BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (898 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039868|gb|ACT56664.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 898

 Score = 1855 bits (4806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/898 (100%), Positives = 898/898 (100%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA
Sbjct: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL
Sbjct: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG
Sbjct: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK
Sbjct: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV
Sbjct: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK
Sbjct: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ
Sbjct: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP
Sbjct: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
           PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR
Sbjct: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI
Sbjct: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI
Sbjct: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI
Sbjct: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ
Sbjct: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI
Sbjct: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK
Sbjct: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898


>gi|315122762|ref|YP_004063251.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496164|gb|ADR52763.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 906

 Score = 1380 bits (3572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/901 (73%), Positives = 776/901 (86%), Gaps = 4/901 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M N+ SIR TFL+FFQK  H++L SSSLIP NDPTLMFTN+GMV FKNIFT QEK  Y+ 
Sbjct: 1   MRNLGSIRKTFLDFFQKREHKILDSSSLIPHNDPTLMFTNAGMVQFKNIFTSQEKRSYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKCVRAGGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKERAI+LAW+LLTKEFD+
Sbjct: 61  AATVQKCVRAGGKHNDLDNVGRTTRHHTFFEMLGNFSFGDYFKERAIKLAWELLTKEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D RR+ +TVYD DEEAF LWKKISGL ++KIIR+   DNFWSMA+TGPCGPCSEIFFDQG
Sbjct: 121 DCRRIVVTVYDGDEEAFNLWKKISGLPSNKIIRVAGKDNFWSMADTGPCGPCSEIFFDQG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   GGLPGS+E G+RY+EIWNLVFMQFEQ++++ER ILP MSIDTGMGLER++ VLQ K
Sbjct: 181 EGFLGGLPGSAEAGDRYLEIWNLVFMQFEQKSQKERCILPSMSIDTGMGLERISAVLQGK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           T+NYDIDLFK LIQASEQ+TG+KY+G++I+NHRVIVDHLRSSSFLIADGILP NEGRGYV
Sbjct: 241 TDNYDIDLFKTLIQASEQITGVKYKGDDIINHRVIVDHLRSSSFLIADGILPTNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAMCYARLLGY +PLMM L P LC+EMGSAYPELIQA+LLIEETL+ ED RF K
Sbjct: 301 LRRIMRRAMCYARLLGYEDPLMMRLFPVLCSEMGSAYPELIQAQLLIEETLKVEDMRFSK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD+G+ LLD V S L K+ IL+G VAFKLYDTHGLPLDIMQDIL ARGL G+D+ SF Q
Sbjct: 361 TLDKGIYLLDEVSSSLEKNAILDGSVAFKLYDTHGLPLDIMQDILWARGLGGVDVASFKQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK----VL 476
           +LEEQRS+AR+H LGLG   TEKIWFSLKEKYG TQF+GY++  GSK +  D K     L
Sbjct: 421 SLEEQRSKARSHCLGLGEKITEKIWFSLKEKYGTTQFVGYNIHHGSKVIAGDEKKGDYSL 480

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            QKP +D T G+ +IVKAIV Q  IV+ A +GQKVEV+FDQTPFYAE+GGQ+GDTG A+G
Sbjct: 481 SQKPSVDFTQGIPAIVKAIVLQDSIVDVARAGQKVEVLFDQTPFYAESGGQVGDTGIAVG 540

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+ LQITDVQKK  GIFVHHA +E G+LRTEM ++LTI+YQ+RRQLSINHSATHLLH A
Sbjct: 541 EGVSLQITDVQKKVGGIFVHHATIEHGVLRTEMPIILTINYQDRRQLSINHSATHLLHAA 600

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L TILG HVSQ GS I P+ LRFD+ HSKPIT  E+K I+D++ND+IAQN  ++TRIMN 
Sbjct: 601 LRTILGPHVSQKGSHIIPERLRFDIVHSKPITREEIKLIQDHINDVIAQNYSIITRIMNI 660

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DAIASG++AL G KY+D+VRVVS+E +DG V++S LCGGTHVSSTGEIML++IVSES++
Sbjct: 661 DDAIASGSSALFGKKYSDKVRVVSIESDDGRVYASELCGGTHVSSTGEIMLVHIVSESAV 720

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA++GQRARS+L+ QDEK++SLASFLKV   NVV RVEEIWEE R+L LI+AK
Sbjct: 721 SAGIRRIEAVSGQRARSYLVEQDEKVRSLASFLKVQPSNVVKRVEEIWEERRELHLINAK 780

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            KL+LNV+DLSCH IA+VNFMSH+I + D KELK ++D LQKKI+SGIIML+G+SKEKKA
Sbjct: 781 HKLKLNVDDLSCHTIANVNFMSHVIPDADFKELKGLIDMLQKKIKSGIIMLIGVSKEKKA 840

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           SV+I VT+DL+DRFNA++L RL+AKVLGG GGGGRP+MAQSGGP+GNK DQ+IA + SFL
Sbjct: 841 SVVIAVTQDLIDRFNAINLVRLAAKVLGGSGGGGRPNMAQSGGPDGNKVDQSIANIVSFL 900

Query: 897 K 897
           K
Sbjct: 901 K 901


>gi|222086162|ref|YP_002544694.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723610|gb|ACM26766.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 886

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/896 (57%), Positives = 662/896 (73%), Gaps = 36/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYTT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQ  KQER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKQERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI+ASE+ TG+K EG +  +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ L  ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALVQQMGRAYPELVRAEALTSETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   S L K + L+G+ AFKLYDT+G PLD+ QD L ARG+ G+DI SF 
Sbjct: 361 KTLERGLSLLNDATSTLHKGDSLDGETAFKLYDTYGFPLDLTQDALRARGI-GVDISSFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR+H  G G   TE IWF LKEK+GAT+F+GYD                  
Sbjct: 420 DAMERQKAEARSHWTGSGDKATETIWFELKEKHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G  V+ A +G KV+++ +QTPFY E+GGQ+GDTG    D  
Sbjct: 462 -----TEVAEGVIQAIVKDGVAVDSASAGDKVQIIVNQTPFYGESGGQMGDTGVISSDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L ++D QKK EG+FVH A V  G ++T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLAVSDTQKKGEGLFVHIATVSDGTIKTGDAVVLTVDHNRRSRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTH S+TG+I L+ I+ +S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGVRGAKAGKPYSIELCGGTHASATGQIGLIRILGDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR +L  QD+++K+LA+ LKV   +VV RVE + +E RKL  +L
Sbjct: 697 AVGAGVRRIEAVTGESARDYLAEQDDRVKALATALKVQPTDVVSRVEALMDERRKLEREL 756

Query: 773 IHAKRKLQL-NVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +   +  S   + D+N   F+   IS VD K+LK + D  +  + SG++ L+
Sbjct: 757 ADAKRKLAMGGGQGGSADAVRDINGVKFLGKAISGVDPKDLKGLADEGKTSLGSGVVALI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 GVSEDGKASAVVAVTDDLIGRFSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGAK 872


>gi|15965551|ref|NP_385904.1| alanyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307302671|ref|ZP_07582427.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307318519|ref|ZP_07597953.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|7404473|sp|P27866|SYA_RHIME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15074732|emb|CAC46377.1| Alanyl-tRNA ligase [Sinorhizobium meliloti 1021]
 gi|306895859|gb|EFN26611.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306903035|gb|EFN33626.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 887

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/909 (55%), Positives = 663/909 (72%), Gaps = 37/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+EE G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + +  NG+ AFKLYDT+G PLD+ QD L A+G+ G+D  +F 
Sbjct: 361 KTLERGLNLLAEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKGI-GVDTDAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF L++K+GAT F+GYD                  
Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFELRDKHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ AIV+ G +VE A  G+ V++V +QTPFY E+GGQ+GDTG    +  
Sbjct: 462 -----TESAEGVILAIVKDGAVVESAAKGENVQLVLNQTPFYGESGGQVGDTGVITTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L +TD QK+ EG+FVH+  VE G ++T  +  LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLTVTDTQKRGEGLFVHYCTVEEGSVKTGEAAALTVDHARRARLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+II QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIIVQNTPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +VSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLRGSKAGKPYSVELCGGTHVSATGDIGLVRVVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR++L  QDE++K+LA+ LKV   +V+GRVE + +E RKL  +L
Sbjct: 697 AVGAGVRRVEALTGEAARAYLGEQDERVKTLAAALKVQPADVLGRVEALLDERRKLEREL 756

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL L     N    +   I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALAGDGQNGSGDAARDIGGVRFLGRVVSGVEPKDLKSLADDGKKSLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G +A +
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGRAAE 876

Query: 888 AIAGVASFL 896
           AI  VA  L
Sbjct: 877 AIEAVAGAL 885


>gi|150396732|ref|YP_001327199.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|205830211|sp|A6U9N4|SYA_SINMW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150028247|gb|ABR60364.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 887

 Score = 1021 bits (2640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/897 (55%), Positives = 660/897 (73%), Gaps = 37/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  NG+ AFKLYDT+G PLD+ QD L A+G+ G+D  +F 
Sbjct: 361 KTLERGLNLLEEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKGI-GVDTDAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF L++K+GAT F+GYD                  
Sbjct: 420 AAMQRQKAEARANWTGSGDAATETIWFELRDKHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G +VE A  G+ V++V +QTPFY E+GGQ+GDTG    +  
Sbjct: 462 -----TESAEGVIQAIVRDGTVVESASKGETVQLVLNQTPFYGESGGQVGDTGVVTTESG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L +TD QK+ EG+FVH+ +VE G ++T  +  L +D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLTVTDTQKRGEGLFVHYCVVEEGSVKTGEAAALAVDHARRTRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HVSQ GS + P+ LRFDV+H KP+TS ELK +E+  N+II QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVSQKGSLVAPERLRFDVSHPKPMTSEELKVVEEMANEIIVQNTPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ IVSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLHGSKAGKAYSVELCGGTHVSATGDIGLVRIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ +G+RR+EA+TG+ AR++L  QDE++K+LA+ LKV   +V+GRVE + +E RKL  +L
Sbjct: 697 AVGSGVRRVEALTGEAARAYLGEQDERVKALAAALKVQPSDVLGRVESLLDERRKLEREL 756

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL L     N    +  +I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALAGDGQNGSGEAAREIGGVRFLGRVVSGVEPKDLKSLADDGKKTLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G +
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGR 873


>gi|227822193|ref|YP_002826164.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227341193|gb|ACP25411.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 887

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/897 (55%), Positives = 656/897 (73%), Gaps = 37/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+ E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVNLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + +  +G+ AFKLYDT+G PLD+ QD L  +G+  +D  +F+
Sbjct: 361 KTLERGLSLLADASAGLSEGDQFDGETAFKLYDTYGFPLDLTQDALRTKGIT-VDTDAFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF LKEK+GAT F+GYD                  
Sbjct: 420 TAMQRQKAEARANWAGSGEAATETIWFELKEKHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G +VE A  G+ V+++ +QTPFY E+GGQ+GDTG    +  
Sbjct: 462 -----TESAEGVIQAIVRDGAVVESASKGESVQLILNQTPFYGESGGQMGDTGVIATETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QK+ EG+FVH+  V  GI++T  +  LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KVAVTDTQKRGEGLFVHYGTVTEGIVKTGEAAALTVDHARRLRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ EL+ +E+  N++I QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELRIVEEMANEVIVQNTPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +VSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGIRGSKAGRPYSVELCGGTHVSATGDIGLVRVVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR++L  QDE++KSLAS LKV   +V+GRVE + +E RKL  +L
Sbjct: 697 AVGAGVRRLEALTGEAARAYLNEQDERVKSLASALKVQPADVLGRVEALLDERRKLEREL 756

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL L     N    +  +I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALVGDGENGSGDAAREIGGVRFLGKVVSGVEPKDLKSLADDGKKTLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G +
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGR 873


>gi|241204888|ref|YP_002975984.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858778|gb|ACS56445.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 884

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/910 (55%), Positives = 651/910 (71%), Gaps = 42/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS EE G+R++E WNLVFMQFEQ    ER  LP+ SIDTGMGLERMA VLQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTAPGERSPLPRPSIDTGMGLERMAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI   E   G+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    ++L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTNLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF LKEK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELKEKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV++G +   A +G KV++V  QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TETAEGVVQAIVKEGAVSTAAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHQGTVIDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVV++       + G  +S  LCGGTHV +TG+I L+ ++ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKAYSIELCGGTHVGATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR +L  QDE++K+LA+ LKV  G V+ RVE + +E RKL  +L
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754

Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             AKRKL +      +V+  +  ++A V F+   IS VD K+LK + D  +  I SG++ 
Sbjct: 755 GDAKRKLAMGGGQGGSVD--AVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVA 812

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG+S + KAS ++ VT DL+ R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD
Sbjct: 813 LVGVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKAD 872

Query: 887 QAIAGVASFL 896
           +AI  VA  L
Sbjct: 873 EAIEAVAVAL 882


>gi|116252382|ref|YP_768220.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|205830192|sp|Q1MFZ9|SYA_RHIL3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115257030|emb|CAK08124.1| putative alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 884

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/910 (55%), Positives = 650/910 (71%), Gaps = 42/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS EE G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI   E   G+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTDLAKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELKEKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G +  EA +G KV++V  QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TETAEGVVQAIVKDGAVAAEASAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHQGTVVDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVV++       + G  +S  LCGGTHV +TG+I L+ ++ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKPYSIELCGGTHVGATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR +L  QDE++K+LA+ LKV  G V+ RVE + +E RKL  +L
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754

Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             AKRKL +      +V+  +  ++A V F+   IS VD K+LK + D  +  I SG++ 
Sbjct: 755 ADAKRKLAMGGGQGGSVD--AVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVA 812

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG+S + KAS ++ VT DL+ R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD
Sbjct: 813 LVGVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKAD 872

Query: 887 QAIAGVASFL 896
           +AI  VA  L
Sbjct: 873 EAIEAVAVAL 882


>gi|325293275|ref|YP_004279139.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325061128|gb|ADY64819.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 897

 Score =  994 bits (2571), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/900 (54%), Positives = 648/900 (72%), Gaps = 43/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 11  MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 71  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 130

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 131 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 190

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 191 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 250

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DLF+ LI AS + TG+  EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 251 KHDNYDTDLFRALISASVEATGVPAEGEKRASHRVIADHLRSSAFLIADGVLPSNEGRGY 310

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 311 VLRRIMRRAMRHAELLGSREPLIYKLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 370

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    S L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 371 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 429

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK GAT+F+GYD                  
Sbjct: 430 DAMQRQKAEARSHWAGSGDKATETVWFELKEKLGATEFLGYD------------------ 471

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G+ V+ A  G+ V++V +QTPFY E+GGQ+GDTG   GD  
Sbjct: 472 -----TETAEGVIQAIVKDGKSVDSAAEGETVQIVVNQTPFYGESGGQMGDTGVISGDNG 526

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +++ QKK EG+FVH   V +G L+ + ++ LT+D+  R +L  NHSATHLLH AL  
Sbjct: 527 TFTVSETQKKGEGLFVHSGTVSKGGLKLDDAVQLTVDHDRRSRLRANHSATHLLHEALRE 586

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +E+  N+I+ QN PVVTR+M+ +DA
Sbjct: 587 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNSPVVTRLMSVDDA 646

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH--------SSALCGGTHVSSTGEIMLLYIV 711
           IA GA AL G KY D VRVVS+     GVH        S  LCGGTHV++TG+I L+ I+
Sbjct: 647 IAEGAMALFGEKYGDEVRVVSMGT---GVHGAKANRPYSVELCGGTHVAATGQIGLIRIL 703

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            ES++ AG+RR+EA+TGQ A ++L  QDE++K+LAS LKV  G+V+ RVE + +E +KL 
Sbjct: 704 GESAVGAGVRRLEAVTGQGALAYLSEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLE 763

Query: 771 -QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +L  A++KL +     +       ++A VNF++  +S +D+K+LK + D  +  I SG+
Sbjct: 764 RELADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANIGSGV 823

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L+ +S++ KAS +  VTEDL  RF+AVD+ R ++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 824 VLLIAVSEDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGAK 883


>gi|159184958|ref|NP_354854.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22096194|sp|Q8UE87|SYA_AGRT5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159140236|gb|AAK87639.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 887

 Score =  991 bits (2563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/897 (54%), Positives = 646/897 (72%), Gaps = 37/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DLF+ LI AS + TG+  EG +  +HRVI DHLRSS+FLIADG+LP++EGRGY
Sbjct: 241 KHDNYDTDLFRALIAASVEATGVPAEGEHRASHRVIADHLRSSAFLIADGVLPSSEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PL+  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAELLGSRDPLIYRLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    S L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 361 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK+GAT+F+GYD                  
Sbjct: 420 DAMQRQKAEARSHWAGSGDKATETVWFELKEKFGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++AIV+ G+ V+ A  G+ V +V +QTPFY E+GGQ+GDTG  +GD  
Sbjct: 462 -----TESAEGVIQAIVRDGKEVDSAAEGETVHIVVNQTPFYGESGGQMGDTGVIVGDAG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++  QKK EG+FVH   V +G L+   ++ LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 TFDVSGTQKKGEGLFVHSGTVSKGGLKVNEAVQLTVDHDRRSRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEDMANEIVLQNSPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV++TG+I L+ I+ ES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ +G+RR+EA+TGQ A ++L  QDE++K+LAS LKV  G+V+ RVE + +E +KL  +L
Sbjct: 697 AVGSGVRRLEAVTGQGALAYLAEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 756

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL +     +       ++A VNF++  +S +D+K+LK + D  +  + SG+++L
Sbjct: 757 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANLGSGVVLL 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +S + KAS +  VTEDL  RF+AVD+ R ++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 IAVSDDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGTK 873


>gi|86357937|ref|YP_469829.1| alanyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|86282039|gb|ABC91102.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 899

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/905 (55%), Positives = 642/905 (70%), Gaps = 38/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 16  MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 76  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 135

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 136 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 195

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS EE G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 196 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 255

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L    E   G+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 256 VQSVFDTDLFRTLTGTIEDTIGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 314 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 373

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 374 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDIAGFT 432

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 433 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GD G    D  
Sbjct: 475 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 529

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G++R   ++ +T+D+  R +L  NHSATHLLH AL  
Sbjct: 530 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 589

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T  ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 590 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 649

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 650 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 709

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL  +L
Sbjct: 710 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 769

Query: 773 IHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 770 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 829

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S++ KAS ++ VT DL++R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 830 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 889

Query: 889 IAGVA 893
           I  VA
Sbjct: 890 IEAVA 894


>gi|205830239|sp|Q2K7T4|SYA_RHIEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 884

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/905 (55%), Positives = 642/905 (70%), Gaps = 38/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS EE G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L    E   G+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGTIEDTIGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDIAGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GD G    D  
Sbjct: 460 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G++R   ++ +T+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T  ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL  +L
Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 754

Query: 773 IHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 755 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S++ KAS ++ VT DL++R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 815 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 874

Query: 889 IAGVA 893
           I  VA
Sbjct: 875 IEAVA 879


>gi|222148884|ref|YP_002549841.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735870|gb|ACM36833.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 887

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/909 (53%), Positives = 648/909 (71%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+ NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSTFLDYFKTNGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+EF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EAF LWKKI+GL  +KIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DRDKLCVTVYHTDDEAFGLWKKIAGLPEEKIIRIGTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ  K++R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQVTKEQRVDLPRPSIDTGMGLERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI AS  +TG+  EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFRALIDASVDLTGVPAEGERRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P++  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAELLGSRDPMIYKLLPVLVQQMGRAYPELVRAEALISETLKLEENRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K + ++G+ AFKLYDT+G PLD+ QD L ARG+ G+DI  FN
Sbjct: 361 KTLERGLSLLSDATATLNKGDSIDGETAFKLYDTYGFPLDLTQDALRARGI-GVDITGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA   G G    E +WF LK+K+GAT+F+GY                   
Sbjct: 420 DAMQRQKAEARASWSGSGDKAMETVWFELKDKHGATEFLGYS------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       ++A+V+ G ++E+A +G+ V+VV +QTPFY E+GGQ+GDTG  +GDG 
Sbjct: 462 -----AESAEGEIQALVRDGAVIEQATAGENVQVVVNQTPFYGESGGQVGDTGEIVGDGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++ D  KK EG+FVH A V  G +R    + L +D+  R +L  NHSATHLLH AL  
Sbjct: 517 VLEVRDTLKKGEGLFVHVATVREGTVRAGTVVALNVDHARRSRLRANHSATHLLHEALRD 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS + P+ LRFD++H KP+T+ ELK +ED  N+II QN  V TR+M  +DA
Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHPKPVTAEELKIVEDMANEIIVQNAAVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +V+ES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTVVRGPKAGRPYSIELCGGTHVSATGDIGLVRLVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR++L  QDE++K+LAS LKV   +VV RVE + +E RKL  +L
Sbjct: 697 AVGAGVRRIEALTGESARAYLAEQDERVKALASALKVQPVDVVSRVEALVDERRKLEREL 756

Query: 773 IHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +            ++  + F+   ++ +D K+LK + D  +  + SG+++L+
Sbjct: 757 ADAKRKLAMGGGSTGAADVPRELGGIKFIGKQLAGIDPKDLKGMADEAKSVLGSGVVLLI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++++ KAS +  VT DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G KAD A
Sbjct: 817 AVAEDGKASAVASVTGDLTSKVSAVDLVRIASSALGGKGGGGRPDMAQAGGPDGAKADDA 876

Query: 889 IAGVASFLK 897
           I  VA  ++
Sbjct: 877 IEAVAKAIE 885


>gi|209549551|ref|YP_002281468.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535307|gb|ACI55242.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 884

 Score =  983 bits (2541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/899 (55%), Positives = 638/899 (70%), Gaps = 44/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS EE G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A E+  G K +G+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGAIEETMGAKAKGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELVRAEALISETLKLEEGRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + LGK ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTDLGKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV++G   EE  +G KV++V +QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TETAEGVVQAIVREGAAAEEVKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++I+D QKK EG+FVH  +V  G  +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 RIEISDTQKKGEGLFVHSGVVVEGAFKAGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN  V TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSAVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH--------SSALCGGTHVSSTGEIMLLYIV 711
           I  GA AL G KY D VRVVS+     GVH        S  LCGGTHVS+TG+I L+ ++
Sbjct: 635 IEEGAMALFGEKYGDEVRVVSMGT---GVHGAKSNKPYSVELCGGTHVSATGQIGLIRVL 691

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            ES++ AG+RRIEA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL 
Sbjct: 692 GESAVGAGVRRIEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDERRKLE 751

Query: 771 -QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +L  AKRKL +         +  ++A V F+   IS VD K+LK + D  +  I SG++
Sbjct: 752 KELADAKRKLAMGGGQGGSADAVREVAGVKFLGKSISGVDPKDLKGLADDGKTSIGSGVV 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            L+G+S + KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 812 TLIGVSDDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|190892008|ref|YP_001978550.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|190697287|gb|ACE91372.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 884

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/896 (55%), Positives = 640/896 (71%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+EE G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L  A E   G+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGAIEDAAGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR++L  QD+++K+LA+ LKV    V+ RVE + +E RKL  +L
Sbjct: 695 AVGAGVRRLEAVTGESARAYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|327190521|gb|EGE57615.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 884

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/896 (55%), Positives = 639/896 (71%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+EE G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L  A E   G+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGAIEDAVGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  
Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL  +L
Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|163759600|ref|ZP_02166685.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283197|gb|EDQ33483.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 884

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/895 (53%), Positives = 635/895 (70%), Gaps = 35/895 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KN HE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNEIRSAFLDYFKKNEHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYTT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+LAW+LLT+EF +
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIELAWNLLTREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL +TVY  D++AF LW+KI+G+   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 NKERLLVTVYHTDDDAFDLWRKIAGVPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS++E G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQLTVDERVDLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE++TG+  EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRRLIMASEELTGVSAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMYKLLPTLVAEMGRAYPELTRAEALISETLKLEETRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD   + LG+ + L G+ AFKLYDT+G PLD+ QD L  RG+  +D   F 
Sbjct: 361 KTLERGLSLLDEASADLGEGDRLGGETAFKLYDTYGFPLDLTQDALRQRGIE-VDTDGFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARAH  G G   TE +W+ +K++ GAT F+GYD                  
Sbjct: 420 AAMERQKAEARAHWSGSGDKATETVWYEIKDRVGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++A+V+ G  V  A +G+ V+VV +QTPFY E+GGQ+GD G   G+G 
Sbjct: 462 -----TEIAEGVIQAMVRDGAEVAAAKAGESVDVVVNQTPFYGESGGQMGDQGIISGEGY 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           RL+++D QK+ EG+FVH A+V  G ++      L + +  R ++  NHSATHLLH AL  
Sbjct: 517 RLEVSDTQKRGEGLFVHRAVVAEGEVKAGAVAQLDVAHSRRAKIRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ EL  +E   N+II QN PV TR+M  +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELSEVETMANEIILQNSPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     GV     +S  LCGGTHV++TGEI L+ ++S+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVRGVKANRPYSVELCGGTHVAATGEIGLVRVLSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR HL  QDEKL+  AS LKV  G+VV R+E + +E +K+  +L
Sbjct: 697 AVSAGVRRIEAVTGEAARQHLSEQDEKLRQAASLLKVQPGDVVSRIEALMDERKKMEREL 756

Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A++KL L            I  V F+  +++ V  K+LK ++DA +  + SG+   V 
Sbjct: 757 TEARKKLALGGGGAGGDESRDIGGVKFLGKVVNGVQPKDLKGLVDAAKTSLGSGVAAFVA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           IS++ KASV++ VTEDL  + +AVDL R++++ +GG GGGGRP MAQ+GGP+G K
Sbjct: 817 ISEDGKASVVVGVTEDLTSKLSAVDLVRVASQAIGGKGGGGRPDMAQAGGPDGAK 871


>gi|163868621|ref|YP_001609830.1| alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|205829989|sp|A9IVY8|SYA_BART1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161018277|emb|CAK01835.1| Alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 888

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/913 (53%), Positives = 656/913 (71%), Gaps = 41/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ +Y+ 
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHQVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQHLYKK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+WDLLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWDLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KISGL  +KI+RI T DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYQSDDVAAELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ+EQ +K+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQLSKEERVDLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI ASE++TG+K  G+ + +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRVLIGASEKITGIKATGDFVASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  LLPAL  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWQLLPALICEMGQAYPELVRAESLISETLKLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + + LNG+VAFKLYDT+G PLD+ QD+L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEESAKLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+  ARAH  G G   TE IWFS++++ G T+F+GY+                  
Sbjct: 420 KAMERQKEEARAHWSGSGEAVTETIWFSVRDQVGVTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V  G+IV+E  SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGIITALVCDGKIVDEVSSGQKAILVLNQTPFYGESGGQIGDSGIISGEDF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+F+H   V+ G  +    + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 IFEVHDTQKKADGVFIHLGKVKSGHAKISDCVQLTVDVVRRKKIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++P+ LRFD +H K ++  ELK IED  N+I+ QN  V TR+M  ++A
Sbjct: 577 VLGSHVTQKGSLVSPERLRFDFSHPKSVSLEELKKIEDLANEIVLQNNKVTTRLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+    E GG+    S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYEDEVRVVSMGAPLEQGGLKKHWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S+ AG+RRIEA+TG  AR +L  QD +++ ++  LK S  ++  RV  + +E RK   +L
Sbjct: 697 SVSAGVRRIEALTGAAARLYLCRQDVRIREISDLLKTSSSDLEERVRSLLDERRKFEKEL 756

Query: 773 IHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              ++K+ LN +       D++   I  ++FM HI+  +  ++LK+++DA +K+I SG++
Sbjct: 757 NDVRKKMVLNGKITESGQGDITI--INGLSFMRHIVKNILPRDLKALVDAGKKQIGSGVV 814

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             + IS++ K S ++ VT+DL D+ NAVDL R+ + VLGG GGGGR  MAQ+GGP+GNKA
Sbjct: 815 AFITISEDGKGSAVVGVTDDLTDKLNAVDLVRILSNVLGGQGGGGRSDMAQAGGPDGNKA 874

Query: 886 DQAIAGVASFLKK 898
           ++A A +  FL+K
Sbjct: 875 NEAFAALKDFLEK 887


>gi|319784062|ref|YP_004143538.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169950|gb|ADV13488.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 888

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/902 (52%), Positives = 636/902 (70%), Gaps = 37/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRKEGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T+EF L
Sbjct: 61  ASTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 SKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS EE G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDAASSAIGHGPDKETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  R ++ +D   F 
Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRSIS-VDTAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE IWFS++EK GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWAGSGDAATETIWFSVREKAGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I++A+V+ G+ V+ A  G  V +V +QTPFYAE+GGQ+GDTG   G+G 
Sbjct: 462 -----TEAAEGIIQALVRDGKAVDGAGKGDAVAIVVNQTPFYAESGGQMGDTGVISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++++D QKKA+G+FVH   V  G ++T  ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEVSDTQKKADGLFVHIGKVASGTVKTGAAVELKVDHARRSRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS + P+ LRFD++H+KPI++ +L+ +E   N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHNKPISAEDLEEVERMANEIVVQNGPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL  +L
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756

Query: 773 IHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL L          +   +A V F+   +S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGSSADAPAANETVAGVGFLGKTVSGVSPKDLKPLADAGKTSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KAD 
Sbjct: 817 VGSGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKADD 876

Query: 888 AI 889
           AI
Sbjct: 877 AI 878


>gi|153009317|ref|YP_001370532.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|205830165|sp|A6X0E9|SYA_OCHA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151561205|gb|ABS14703.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 885

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/894 (54%), Positives = 627/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++++KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYYRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQFEQ   ++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGEFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRADALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LL      L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   F+
Sbjct: 361 KTLDRGLGLLSDATESLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTDGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A+V+ G  V+ A  G  V VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TEVAEGVITALVRDGAEVQSAAEGDVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QKK EG+FVH   V +G  +T  ++ L +D   R ++  NHSATHLLH AL  
Sbjct: 517 AIAIKDTQKKGEGVFVHIGEVTKGTAKTGDAVELKVDSVRRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV+Q GS + PD LRFD +H KPI++ EL  +E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELTQVENLANEIILQNAPVSTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QDE++K++A  LK +    + RV  + +E +KL  +L
Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPSEALERVNALLDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GI ++ KAS +  VTEDL+ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GIGEDSKASAVAAVTEDLVGRFSAVDLVRAASVALGGAGGGGRPDMAQAGGPDG 870


>gi|306844100|ref|ZP_07476694.1| alanyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275543|gb|EFM57275.1| alanyl-tRNA synthetase [Brucella sp. BO1]
          Length = 885

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/894 (53%), Positives = 630/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSEDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRNGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|239832092|ref|ZP_04680421.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824359|gb|EEQ95927.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 885

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/894 (54%), Positives = 630/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDEAISFAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQFEQ   ++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKADGELRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPTLIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   F+
Sbjct: 361 KTLDRGLGLLSDATENLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTDGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+ A  G+ V VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVVAALVRDGAEVQSASEGEVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QKK EG+FVH   V +G ++T  ++ L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAIKDTQKKGEGVFVHIGEVAKGTVKTGDAVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV+Q GS + PD LRFD +H KPI++ EL  +E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELAKVENLANEIILQNAPVSTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QDE++K++A  LK +    + RV  + +E +KL  +L
Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPAEALERVNALLDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTEDLL RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDDKASAVAAVTEDLLGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|306840334|ref|ZP_07473106.1| alanyl-tRNA synthetase [Brucella sp. BO2]
 gi|306289733|gb|EFM60922.1| alanyl-tRNA synthetase [Brucella sp. BO2]
          Length = 885

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 ITEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|260460847|ref|ZP_05809097.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259033424|gb|EEW34685.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 888

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/913 (52%), Positives = 639/913 (69%), Gaps = 43/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F++ GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRREGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS EE G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI  +    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDVASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  R ++ +D+  F 
Sbjct: 361 KTLVRGLGLLSEATETLTAGDMLDGETAFKLYDTYGFPLDLTQDALRQRSIS-VDLAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE +WFS++EK GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREKTGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V+A+V+ G+ V+ A  G  V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 462 -----TEQAEGLVQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I+D QKKA+G+FVH   V  G ++   ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEISDTQKKADGLFVHLGTVASGTVKVGAAVELKVDHARRSRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD++H+KPI+  +L+ +E   N+I+ QN PV TR+++ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISPEDLEEVERMANEIVVQNGPVTTRLISVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH--------SSALCGGTHVSSTGEIMLLYIV 711
           IA GA AL G KY D VRVVS+     GVH        S  LCGGTHV +TG+I L+ +V
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSM---GTGVHGAKANRPYSVELCGGTHVRATGDIGLVRVV 693

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           S+S++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL 
Sbjct: 694 SDSAVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLE 753

Query: 771 -QLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +L  A++KL L     +        +A V F+  ++S V  K+LK + DA +  + SG+
Sbjct: 754 KELTEARKKLALGGGAAAGAPSENETVAGVGFLGKMVSGVSPKDLKPLADAGKTSLGSGV 813

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++ VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +K
Sbjct: 814 VVFVGAGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASK 873

Query: 885 ADQAIAGVASFLK 897
           A  AIA V + L+
Sbjct: 874 AGDAIAAVRAALE 886


>gi|225852697|ref|YP_002732930.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263812|ref|ZP_05466344.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641062|gb|ACO00976.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263093940|gb|EEZ17874.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409221|gb|ADZ66286.1| alanyl-tRNA synthetase [Brucella melitensis M28]
 gi|326538929|gb|ADZ87144.1| alanyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 885

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKGKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|17987072|ref|NP_539706.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23502078|ref|NP_698205.1| alanyl-tRNA synthetase [Brucella suis 1330]
 gi|62290112|ref|YP_221905.1| alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82700035|ref|YP_414609.1| alanyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|161619156|ref|YP_001593043.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843466|ref|YP_001627870.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189024350|ref|YP_001935118.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19]
 gi|225627671|ref|ZP_03785708.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|237815619|ref|ZP_04594616.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|254689421|ref|ZP_05152675.1| alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693906|ref|ZP_05155734.1| alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|254697556|ref|ZP_05159384.1| alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701941|ref|ZP_05163769.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|254704486|ref|ZP_05166314.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254706618|ref|ZP_05168446.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254710272|ref|ZP_05172083.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254730450|ref|ZP_05189028.1| alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256031766|ref|ZP_05445380.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256044851|ref|ZP_05447755.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061281|ref|ZP_05451431.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256159936|ref|ZP_05457654.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255167|ref|ZP_05460703.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|256257667|ref|ZP_05463203.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|256369625|ref|YP_003107135.1| alanyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168900|ref|ZP_05755711.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260546661|ref|ZP_05822400.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260565546|ref|ZP_05836030.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260566269|ref|ZP_05836739.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260754944|ref|ZP_05867292.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758160|ref|ZP_05870508.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761986|ref|ZP_05874329.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883954|ref|ZP_05895568.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|261214196|ref|ZP_05928477.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|261222364|ref|ZP_05936645.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261314078|ref|ZP_05953275.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261317834|ref|ZP_05957031.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261325289|ref|ZP_05964486.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261752508|ref|ZP_05996217.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261755167|ref|ZP_05998876.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758391|ref|ZP_06002100.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988865|ref|ZP_06101422.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|265991279|ref|ZP_06103836.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265998329|ref|ZP_06110886.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|297248508|ref|ZP_06932226.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|54039648|sp|P67009|SYA_BRUSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54042023|sp|P67008|SYA_BRUME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|75496699|sp|Q57CU0|SYA_BRUAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123547531|sp|Q2YRU8|SYA_BRUA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205829996|sp|A9M5L7|SYA_BRUC2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205829998|sp|B0CGZ9|SYA_BRUSI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17982730|gb|AAL51970.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23348036|gb|AAN30120.1| alanyl-tRNA synthetase [Brucella suis 1330]
 gi|62196244|gb|AAX74544.1| AlaS, alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616136|emb|CAJ11179.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|161335967|gb|ABX62272.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674189|gb|ABY38300.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189019922|gb|ACD72644.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19]
 gi|225617676|gb|EEH14721.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|237788917|gb|EEP63128.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|255999787|gb|ACU48186.1| alanyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260095711|gb|EEW79588.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260151614|gb|EEW86708.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260155787|gb|EEW90867.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260668478|gb|EEX55418.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672418|gb|EEX59239.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675052|gb|EEX61873.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260873482|gb|EEX80551.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260915803|gb|EEX82664.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260920948|gb|EEX87601.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261297057|gb|EEY00554.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301269|gb|EEY04766.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261303104|gb|EEY06601.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261738375|gb|EEY26371.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261742261|gb|EEY30187.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261744920|gb|EEY32846.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|262552797|gb|EEZ08787.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|263002063|gb|EEZ14638.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661062|gb|EEZ31323.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|297175677|gb|EFH35024.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 885

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|148560301|ref|YP_001259121.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|205829997|sp|A5VQX4|SYA_BRUO2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148371558|gb|ABQ61537.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 885

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+  V  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDHVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +  D +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGDSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|13470354|ref|NP_101920.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|20532259|sp|Q98NQ5|SYA_RHILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14021093|dbj|BAB47706.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 888

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/902 (52%), Positives = 636/902 (70%), Gaps = 37/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRKEGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS EE G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHVWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDAASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + L+ ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLVTETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  R ++ +D+  F 
Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRNIS-VDLAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE +WFS++E+ GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREQTGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +++A+V+ G+ V+ A  G  V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 462 -----TEQAEGLIQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I+D QKKA+G+FVH   V  G ++T  ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEISDTQKKADGLFVHLGKVASGTVKTGAAVELKVDHARRTRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD++H+KPI++ EL+ +E   N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISAEELEEVERMANEIVVQNSPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL+  L
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKAAAATLKISPADVPARVEALLEERKKLEKDL 756

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL L     +        +A V F+   +S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKAVSGVSPKDLKPLADAGKSSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KA+ 
Sbjct: 817 VGADEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAND 876

Query: 888 AI 889
           AI
Sbjct: 877 AI 878


>gi|294852536|ref|ZP_06793209.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294821125|gb|EFG38124.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 885

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGLAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVANQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|254714269|ref|ZP_05176080.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261322043|ref|ZP_05961240.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261294733|gb|EEX98229.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
          Length = 885

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/894 (53%), Positives = 628/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+    V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|254719259|ref|ZP_05181070.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984258|ref|ZP_06096993.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838009|ref|ZP_07470867.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662850|gb|EEZ33111.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406933|gb|EFM63154.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 885

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/894 (53%), Positives = 628/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+  
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEDF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V   +LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVLPHDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGTGGGGRPDMAQAGGPDG 870


>gi|256113755|ref|ZP_05454559.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265995116|ref|ZP_06107673.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766229|gb|EEZ12018.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 885

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/894 (53%), Positives = 628/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+A E+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRALEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|49475765|ref|YP_033806.1| alanyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|59798532|sp|Q6G2Z4|SYA_BARHE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49238572|emb|CAF27813.1| Alanyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 887

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/912 (53%), Positives = 655/912 (71%), Gaps = 41/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++FQ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSTFLDYFQLNGHKIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ + +LW+KISGL  +KI+RI T DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PEDKLLVTVYHNDDVSTELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK++R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSAYEDGDRFIEIWNLVFMQYEQVNKEKRVELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI  S+++TG+K  G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 GHDNYDIDLFRALIAVSQEITGVKATGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWRLLPVLIHEMGQAYPELVRAESLISETLKLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + + LNG++AFKLYDT+G PLD+ QD L  RG++ +D+ +FN
Sbjct: 361 KTLERGLGLLSEASTDLKEGDHLNGEIAFKLYDTYGFPLDLTQDALRCRGIS-VDVAAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+++ARA+  G G   TE IWFS++++ GAT+F+GY+                  
Sbjct: 420 KAMEGQKAKARANWSGSGETVTEAIWFSVRDQLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V+ GEIV++  SGQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 462 -----TEKSEGILTALVRDGEIVDDISSGQKAILVVNQTPFYGESGGQIGDSGTISGKNF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+F+H   V+ G  R    + LT+D   R+++ +NHSATHLLH AL  
Sbjct: 517 VFEVHDTQKKADGVFIHIGEVKSGQARMSECVELTVDGVRRKKIRVNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++PD LRFD +H K ++  EL+ IED  N+I+ QN  V TR+M  +DA
Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSLEELEKIEDLANEIVLQNSEVTTRLMLVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSS---ALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+    E G + S     LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNRLEKGKLKSRWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-I 773
           S+ AG+RRIEA+TG  AR +L  QD ++  +A  LK S  +V  RV  + E+ RKL+  +
Sbjct: 697 SVAAGVRRIEALTGTAARLYLSRQDARVHEIADLLKTSATDVEERVRILLEDRRKLEKEL 756

Query: 774 HAKRK--------LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + +RK        ++ + ED++   I  ++FM  ++  +  ++LK+++D+ +KKI SG++
Sbjct: 757 NDERKKSVLSGGIVKSDQEDITI--INGISFMGRVVKNISPRDLKTLVDSGKKKIGSGVV 814

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +G+S++ K S ++ VT+DL  + NAVDL R+ + +LGG GGGGRP MAQSGGP GNKA
Sbjct: 815 AFIGVSEDGKGSAVLGVTDDLTHKLNAVDLVRILSGILGGQGGGGRPDMAQSGGPKGNKA 874

Query: 886 DQAIAGVASFLK 897
           D+A+A + + L+
Sbjct: 875 DEALAVLKASLE 886


>gi|240850806|ref|YP_002972206.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267929|gb|ACS51517.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 890

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/911 (53%), Positives = 650/911 (71%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+ FL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+P Y+ 
Sbjct: 1   MNSVNNIRSIFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQPPYKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAILLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW++ISGL  +KI+RI T DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYQSDDVAAELWRRISGLPDEKIVRIATADNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ+EQ ++++R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQISQEKRVDLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI ASE++TG++ +G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRALIAASEEITGIEAKGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  LLPAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLLWRLLPALNREMGQAYPELVRAESLISETLRLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + + LNG+VAFKLYDT+G PLD+ QD+L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTDLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRGIS-VDVDTFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+  ARA+  G G   TEKIWFS+++K GAT+F+GY+                  
Sbjct: 420 KAMERQKEEARANWSGSGEAVTEKIWFSVRDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V  G++V+   SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 462 -----TETAKGILTALVCDGKLVDHISSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q+K +G+F+H   V+ G       + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 IFEVHDTQRKGDGVFIHIGEVKSGQASRSDCVELTVDVVRRKKIRGNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++PD LRFD +H K ++  ELK IED  N+II QN  V+TR+M  +DA
Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSPEELKKIEDLANEIILQNSRVITRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVS----VEYEDGGVHSS-ALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS    +E      H S  LCGGTHV  TG+I L++I SES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGEPLEQRRLKKHWSIELCGGTHVERTGDIGLIHIFSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S+ AG+RRIEA+TG+ AR +L  QDE++  +A  LK S   V  RV  + ++ RKL  +L
Sbjct: 697 SVSAGVRRIEALTGKEARLYLSRQDERIHEIADLLKTSSAGVEERVRILLDDRRKLEKEL 756

Query: 773 IHAKRKLQLN--VEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++K+ L+  + + S   I  +N   F   ++  +  ++LK+++D+ +K+I SG++  
Sbjct: 757 NDVRKKMMLSGGITERSQGDITIINGLSFTGRVVKNILPRDLKALVDSEKKQIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL D+ NAVDL  + + +LGG GGGGRP MAQ+GGP GNKAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLTDKLNAVDLVHILSGMLGGKGGGGRPDMAQAGGPEGNKADE 876

Query: 888 AIAGVASFLKK 898
           A A +  FL+K
Sbjct: 877 AFAALKDFLEK 887


>gi|319404395|emb|CBI77998.1| Alanyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 887

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/910 (52%), Positives = 644/910 (70%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+ FL++F++NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSAFLDYFRRNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI AS+++TG+K  G  + +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIHASQEITGIKATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMKKLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+ V   L + + L+G+VAFKLYDT+G PLD+ QD L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEVSIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRCRGIS-VDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS+++K GAT+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A+V  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGVITALVCDGEIVDHISSGQDAMLVVNQTPFYAESGGQVGDSGVISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ +G+F+H   V+ G  +    + L++D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQRRGDGVFIHIGEVKSGQAQISDCVELSVDSERRRKIRANHSATHLLHEALRC 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG H++Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V TR+M  +DA
Sbjct: 577 ILGPHIAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV----EYEDGGVHSS-ALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+    E  +   H S  LCGGTHV  TG+I L++IV ES
Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPTELTRHWSIELCGGTHVQRTGDIGLIHIVGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  N+  R+  + ++ RK   +L
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756

Query: 773 IHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + ++ + LN   L   K     I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NNTRKNVALNGGALQGRKEDITIINGISFMGGVLRNIAVRDLKALVDSGKKQIKSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLINMLNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|209884575|ref|YP_002288432.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872771|gb|ACI92567.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 909

 Score =  941 bits (2433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/910 (52%), Positives = 624/910 (68%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 22  MSGVNEIRSSFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKLPYQR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L
Sbjct: 82  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKEFGL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EA  LWKKI+GL   K+IRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 142 PKDRLLVTVFSEDDEAASLWKKIAGLPDSKVIRIATSDNFWQMGDTGPCGPCSEIFFDHG 201

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +PGG PGS  E+G+R+IEIWNLVFMQFEQ     R  LP  SIDTGMGLERMA VLQ 
Sbjct: 202 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGGVRTPLPHPSIDTGMGLERMAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF  LI+A   +TG    G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 262 KHDNYEIDLFVALIRAISDLTGTDPHGPQKASLRVIADHLRASSFLIADGVLPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ L+EETL+ E+ RF 
Sbjct: 322 VLRRIMRRAMRHAQLLGAKEPLMYRLVWALVREMGQAYPELVRAESLVEETLKLEETRFR 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L   ++ +G+ AF LYDT+G PLD+ QD L  RG+  +D+ SF 
Sbjct: 382 KTLDRGLAILDEKSASLKPGDMFDGETAFTLYDTYGFPLDLTQDALRTRGIH-VDLASFT 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    EK+WF L E+ GAT+F+GYD                  
Sbjct: 441 DAMEQQKAKARASWAGSGDAAAEKVWFPLHEELGATEFLGYD------------------ 482

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                T     +V A+V+ G +V+   +G    VV +QTPFY E+GGQ+GDTG   GD G
Sbjct: 483 -----TEIAEGVVTALVKDGAVVDSLNAGDAAAVVLNQTPFYGESGGQVGDTGILTGDGG 537

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R ++TD QKKA  +FVH   +E+G L+   +L L +D+  R  +  NHSATHLLH AL 
Sbjct: 538 VRFRVTDTQKKAGDLFVHVGTLEQGALKKGAALQLEVDHTRRGAIRANHSATHLLHEALR 597

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS ++P+ LRFD  H+KPI + EL+ IED  NDI+ QN  V TR+M  +D
Sbjct: 598 QVLGDHIAQRGSLVSPERLRFDFAHTKPIAADELRRIEDIANDIVLQNSEVTTRLMGLDD 657

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A +SGA AL G KY D VRVVS+    G     S  LCGGTHV  TG+I L+ I  ES++
Sbjct: 658 ARSSGARALFGEKYGDEVRVVSMGQTSGNALGWSVELCGGTHVKRTGDIGLVSITGESAV 717

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ AR       E  K+ A+ LK +  ++  RV  + EE +KL+  L  
Sbjct: 718 ASGVRRIEALTGRAARHAANHSIETAKAAAAELKTTLEDMPARVAALVEERKKLERDLSD 777

Query: 775 AKRKLQLNVEDL--------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           A++KL +                 + DV  ++  +  ++ K+LKS+ D  +K++ SG++ 
Sbjct: 778 ARKKLAMGGGAGGNGSTAASDVRNVGDVKLLARAVQGIEVKDLKSLADQGKKQLGSGVVA 837

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LV  S++ KASV++ VT DL  RFNAVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD
Sbjct: 838 LVATSEDGKASVVVGVTPDLTSRFNAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 897

Query: 887 QAIAGVASFL 896
            A+  + + +
Sbjct: 898 AALKAIEAAM 907


>gi|299131739|ref|ZP_07024934.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298591876|gb|EFI52076.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 888

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/910 (53%), Positives = 622/910 (68%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSGFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED+EAF LWKKI+GL   +I+RI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYAEDDEAFGLWKKIAGLPESRIVRIGTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +PGG PGS  E+G+R+IEIWNLVFMQF+Q     R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFDQIAPGNRNPLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +TG    G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAISDLTGADPHGAQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+ AL  EMG AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVWALVREMGQAYPELVRAEALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+ G+D+ SF 
Sbjct: 361 KTLDRGLAILDEKSAALHKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-GVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G    EKIWF L+E+ GAT+F+GYD                  
Sbjct: 420 DAMERQKAKARASWAGSGDTAAEKIWFPLREELGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                T     +V A+V+ G  VE   +G    VV +QTPFY E+GGQ+GDTG   GD G
Sbjct: 462 -----TEIAEGVVTALVKDGASVESLKAGDAASVVLNQTPFYGESGGQVGDTGVLTGDGG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R ++TD QKKA  +FVH   +E+G L+    L L +D+  R  +  NHSATHLLH AL 
Sbjct: 517 VRFRVTDTQKKAGDLFVHIGQLEQGTLKKGAPLQLEVDHARRGAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS ++P+ LRFD  H+KPIT  EL  IED  NDI+ +N  V TR+M  ED
Sbjct: 577 QVLGDHIAQRGSLVSPERLRFDFAHTKPITPDELSRIEDIANDIVLENGEVTTRLMGIED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A +SGA AL G KY D VRVVS+    G     S  LCGGTHV  TG+I L+ I  ES++
Sbjct: 637 ARSSGARALFGEKYGDEVRVVSMGQGSGNALGWSVELCGGTHVRRTGDIGLVSITGESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ AR       +  K+ A+ LK +  ++  R+  + EE +KL+  L  
Sbjct: 697 ASGVRRIEALTGRAARQAANHSIQTAKTAAAELKTTLEDMPVRIAALIEERKKLERDLSE 756

Query: 775 AKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           A++KL                   + DV  ++  +  V+ K+LKS+ D  +K+I SG++ 
Sbjct: 757 ARKKLAMGGGGSAGGAAAASDVRSVGDVKLLARAVQGVEVKDLKSLADQGKKQIGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LV  S++ KASV++ VT DL  RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD
Sbjct: 817 LVATSEDGKASVVVGVTPDLTSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 876

Query: 887 QAIAGVASFL 896
            A+  + + +
Sbjct: 877 AALKAIEAAM 886


>gi|319405869|emb|CBI79501.1| Alanyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 889

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/912 (52%), Positives = 643/912 (70%), Gaps = 39/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F++NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNNIRSTFLDYFRRNGHEIISSSPLVPRNDPTLMFTNAGMVQFKNVFTGFEQCPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L ITVY  D  A +LW+KISGL  +KIIRITTNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLITVYHTDNIAAELWRKISGLPNEKIIRITTNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 GEIFGGPPGSADEDGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF  LI AS+++TG+K  G  I +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDTDLFCKLISASQEITGVKATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKELLMEQLLPVLIREMGQAYPELVRAEALISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  +G+VAFKLYDT+G PLD+ QD L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDIEAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS++++ G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASVTETIWFSIRDQVGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A++  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGVITALICDGEIVDHISSGQDAMLVVNQTPFYAESGGQIGDSGVISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ +G+F+H   V+ G  +    + LT+D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVRDTQRRGDGVFIHIGKVKSGQAKISDCVELTVDSERRRKIRANHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V TR+M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSQVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH-----SSALCGGTHVSSTGEIMLLYIVSES 714
           +  GA AL G KY D VRVVS+      +      S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 VFEGAVALFGEKYGDEVRVVSMGERCEPIALKKHWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK+S  N+  RV  ++ + RK   +L
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEIASFLKISPANLEERVRNLFNDRRKFEKEL 756

Query: 773 IHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            + ++ + LN + L   K       I  ++FM  ++  +  ++LK+++D+ +K+I+SG++
Sbjct: 757 NNTRKNVVLNGKALQGRKGEITTININGISFMGGVLRNIAIRDLKTLVDSGKKQIKSGVV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             V +S++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KA
Sbjct: 817 AFVSVSEDGKGSAVVGVTDDLINMLNAVDLVRIVSVVLGGQGGGGRPDMAQAGGSKGDKA 876

Query: 886 DQAIAGVASFLK 897
           ++AI  + +FLK
Sbjct: 877 EEAITALKAFLK 888


>gi|118588631|ref|ZP_01546039.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata
           IAM 12614]
 gi|118438617|gb|EAV45250.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata
           IAM 12614]
          Length = 885

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/907 (51%), Positives = 633/907 (69%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ FL++F+ NGHE++ S  L+P NDPTLMF N+GM  FKN+FTG EK  Y  
Sbjct: 1   MTGVNEIRSAFLDYFKTNGHEVVESGPLVPRNDPTLMFANAGMNQFKNVFTGLEKRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TV+ ED++AF LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PKEKLLVTVFAEDDQAFDLWKKIAGLSEDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ+E Q  ++R  LP+ SIDTGMG+ER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYE-QTPEKRLDLPRPSIDTGMGIERIAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK LI AS   TG++ EG+   +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFKALIAASVNATGVEAEGDATGSHRVIADHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG +EPLM  L+PAL  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGASEPLMHKLVPALVREMGRAYPELSRAEDLITETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L     L+G+ AFKLYDT+G PLD+ QD L  R ++ +D   FN
Sbjct: 360 KTLERGLGLLDTATEGLEAGGRLDGETAFKLYDTYGFPLDLTQDALRTRDIS-VDTDGFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G GS  TE +WF+LKEK+GAT F+GY+                  
Sbjct: 419 AAMERQKAEARAAWSGSGSAATEAVWFALKEKHGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V  +    + V++  +G+   VV +QTPFY E+GGQ+GDTG  +  G+
Sbjct: 461 -----TETAEGVVAGLAADDKEVDKLSAGESGFVVLNQTPFYGESGGQVGDTGWMLASGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  +T+ QKKA+G+FVH   VE G L   ++L L +D+  R+ +  NHSATHL+H AL  
Sbjct: 516 KAAVTNTQKKADGLFVHSVTVEEGELVPGLALELKVDHSRRKAIRSNHSATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS +TP+ LRFD +H KP++  EL ++E   N+I+ QN PV TR+M  +DA
Sbjct: 576 VLGNHVAQKGSLVTPERLRFDFSHPKPVSDEELATVESFANEIVLQNAPVDTRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY + VRVVS+       + G  +S  LCGGTHV  TG+I L+ +VSE 
Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGPKQGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG  AR +L  QD++++ LAS LK+S  +V  RV ++ E+ +KL  +L
Sbjct: 696 AVAAGVRRIEALTGSEAREYLDAQDKRMRELASLLKISADDVPARVAQLVEDRKKLEREL 755

Query: 773 IHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             AK+KL +           +      M+ ++  ++ K+LK + D  + ++ SG+++L+ 
Sbjct: 756 ADAKKKLAMGGGADGGTPVKEAGSFKLMARVVEGINPKDLKGMADEAKTQLGSGVVVLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++++ KA+++  VT+DL D+ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G KA QA+
Sbjct: 816 VAEDDKAAIVTAVTQDLTDKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGAKAAQAV 875

Query: 890 AGVASFL 896
           A + + L
Sbjct: 876 AVIEAHL 882


>gi|319407395|emb|CBI81046.1| Alanyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 887

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/910 (52%), Positives = 638/910 (70%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+ FL++F +NGHE+L SS LIP NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSAFLDYFHRNGHEILSSSPLIPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI  S+++TG++  G  + +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIHTSQEITGIEATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMEKLLPVLVREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+     L + + L+G+VAFKLYDT+G PLD+ QD L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEASIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS+++K G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGITEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A+V  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 462 -----AEKAEGVITALVCDGEIVDHISSGQDAVLVVNQTPFYAESGGQVGDSGIISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q+K +GIF+H   V+ G  +    + L +D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVRDTQRKGDGIFIHIGEVKSGRAKISDCVELIVDSERRRKIRANHSATHLLHEALRC 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V+TR+M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVITRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       E     S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPIELKKHWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  N+  R+  + ++ RK   +L
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756

Query: 773 IHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + ++ + LN   L   K     I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NNTRKNVFLNGGALQGKKEEITIINGISFMGRVLRNIAVRDLKTLVDSGKKQIKSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + IS++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISISEDGKGSAVVGVTDDLINILNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|114707288|ref|ZP_01440185.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537169|gb|EAU40296.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 912

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/893 (53%), Positives = 629/893 (70%), Gaps = 37/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KNGHE + SS L+P NDPTLMF N+GMV FKN+FTG+EK  Y  
Sbjct: 22  MSGVNEIRSAFLDYFAKNGHEKVSSSPLVPRNDPTLMFVNAGMVQFKNVFTGEEKRSYSR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW L+TK+F L
Sbjct: 82  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWSLITKDFGL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY ED+EA  LWKKI+GLS D+IIRI T+DNFW+M ETGPCGPCSEIFFD G
Sbjct: 142 PRDKLLVTVYSEDDEAAGLWKKIAGLSDDRIIRIGTSDNFWTMGETGPCGPCSEIFFDHG 201

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG PGS +E+G+R+IEIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 202 EDIPGGPPGSPNEDGDRFIEIWNLVFMQYEQLAGDERLDLPRPSIDTGMGLERIAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI A E   G + EG  + +HRVI DHLRS++FLIADG+LP+NEGRGY
Sbjct: 262 VHDNYDIDLFRTLIAAVENAIGSRAEGAAVASHRVIADHLRSTAFLIADGVLPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +ARLLG  EP++  LLP L  EMG AYPEL++ + LI ETL+ E++RF 
Sbjct: 322 VLRRIMRRAMRHARLLGAGEPVLYKLLPTLIAEMGRAYPELVRGEALIAETLKLEEKRFL 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL      +G  + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D+ +FN
Sbjct: 382 QTLDRGLSLLADATEGMGAGQKLSGETAFKLYDTYGFPLDLTQDALRQRGIA-VDLDAFN 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR    G G   TEK+WF ++++ GAT+F+GYD                  
Sbjct: 441 TAMERQKAEARKSWAGSGEAATEKVWFPIRDRVGATEFLGYD------------------ 482

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T   S  V A+VQ G  V+ A +G+KV VV +QTPFY E+GGQLGD G       
Sbjct: 483 -----TEEASGSVVALVQDGAEVKSATAGEKVFVVVNQTPFYGESGGQLGDAGVMTDGET 537

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I D QK A+G+FVH  IV+ G +  + +L L ++++ R ++  NHSATHLLH  L  
Sbjct: 538 VIEIEDTQKLADGLFVHRGIVKSGEVSVDDALDLKVEHRRRSKIRSNHSATHLLHEGLRE 597

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD +H KP+  AE++++E   N I+ QN PV TR+M  ++A
Sbjct: 598 VLGTHVAQKGSLVAPERLRFDFSHPKPMDRAEIEAVERLANGIVRQNAPVETRLMAVDEA 657

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I SGA AL G KY D VRVVS+       + G  +S+ LCGGTHVS+TGEI ++++V ES
Sbjct: 658 IESGAMALFGEKYGDEVRVVSMGTAQEGKKAGKPYSTELCGGTHVSATGEIGVVHVVGES 717

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QD++++ +A+ LK S  + + R+E + EE R+L+   
Sbjct: 718 AVGAGVRRIEALTGEAARDYLREQDQRVRKMAALLKASPEDALARLETVVEERRRLEREL 777

Query: 775 A--KRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K++L L  E      S   +  ++++  +I  V  ++LK ++D  +K +QSG++  V
Sbjct: 778 AEVKKRLALAGEGGGKGDSAKTVNGISYLGRVIDGVSGRDLKGLVDEAKKSVQSGVVAFV 837

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G++ E KASV++ VTEDL  RF+AV L R ++  +GG GGGGRP MAQ+GGP+
Sbjct: 838 GVA-EGKASVVVGVTEDLTARFDAVTLVRTASGAIGGKGGGGRPDMAQAGGPD 889


>gi|319899070|ref|YP_004159163.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319403034|emb|CBI76589.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 887

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/910 (52%), Positives = 637/910 (70%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++F  NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y+ 
Sbjct: 1   MNSVNSIRSTFLDYFHHNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM + GPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHTDNVAAELWRKISGLPDEKIIRIATNDNFWSMGDIGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSAYENGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI+AS+++TG++  G  I +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIRASQEITGVEATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM HLLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMGHLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  +G+VAFKLYDT+G P+D+ QD+L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPIDLTQDVLRRRGIS-VDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE +WFS++++ G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASMTETVWFSIRDQVGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A+V  G+IV+   SGQ   +V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 462 -----TEKAEGVITALVCDGKIVDHVFSGQDAMLVVNQTPFYAESGGQIGDSGVICSESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ EG+F+H   V+ G  +    + L ID   RR++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQRRGEGVFIHIGKVKSGQAKISDCVELIIDSGRRRKIRANHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++PD LRFD +H K I+S ELK +ED  NDI+ +N  V T +M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPDRLRFDFSHPKSISSEELKRVEDLANDIVLRNSKVTTHLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       E     S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 IFEGAMALFGEKYGDEVRVVSMGERCEPTELKKRWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           SI +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  NV  RV  ++++ RKL  +L
Sbjct: 697 SIASGVRRIEALTGTTARLYLSKQDKRIYEIASFLKASPANVEERVRNLFDDRRKLEKEL 756

Query: 773 IHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++ + LN   L   K     I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NDTRKSVVLNGRALQGRKENITIINGISFMGGVLRNIAVRDLKTLVDSGKKQIESGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL +  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLTNMLNAVDLVRVISVVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|307945634|ref|ZP_07660970.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771507|gb|EFO30732.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 888

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/910 (52%), Positives = 632/910 (69%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F KN HE++ S  L+P NDPTLMF N+GM  FKNIFTG EK     
Sbjct: 1   MTGVNDIRSTFLDYFSKNSHEVVESGPLVPRNDPTLMFANAGMNQFKNIFTGLEKRECSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TV+ ED+EA  LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PADRLLVTVFAEDDEAAVLWKKIAGLSDDKIIRIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQ    +R  LP+ SIDTGMG+ER+AT+LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQL-ADKRVDLPRPSIDTGMGIERLATILQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK LI ASE  TG++  G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFKALISASEHETGVEASGDALSSHRVIADHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  +PLM  L+P+L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELGRAEALISETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L +   L+G+ AFKLYDT+G PLD+ QD L  RG++ +D   F+
Sbjct: 360 KTLERGLGLLDTASGDLFEGGQLDGETAFKLYDTYGFPLDLTQDALRTRGIS-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE IWF+LK+K GAT F+GY+                  
Sbjct: 419 SAMERQKAEARAAWSGSGGAVTETIWFALKDKVGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +VK +V     V++  SGQ+  VV +QTPFY E+GGQ+GD G  IG+G+
Sbjct: 461 -----TETAEGVVKGLVADDAQVDKLNSGQEGFVVLNQTPFYGESGGQVGDAGLMIGEGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+ ++DVQKKA+G+FVH   VE G L  +  L L +D+  R  +  NHSATHL+H AL  
Sbjct: 516 RVTVSDVQKKADGLFVHAVKVEDGTLTLDQPLELKVDHARRTAIRSNHSATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS ++P+ LRFD +H KP++  EL   E   N+I+ QN PV TR+M  +DA
Sbjct: 576 VLGTHVAQKGSMVSPERLRFDFSHPKPLSDEELAVTEKFANEIVLQNAPVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ +VSE+
Sbjct: 636 IEAGAMALFGEKYGDEVRVVSMGTALHGEKEGKPYSLELCGGTHVKRTGDIGLVTLVSEA 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG  AR++L  QD+++K +A+ LK    +V  RV ++ E+ RKL  +L
Sbjct: 696 AVAAGVRRVEALTGSEARAYLDAQDKRVKEVAAILKSGMADVPARVAQLVEDRRKLEKEL 755

Query: 773 IHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL            +   I  V  M  ++  +++K+LK ++D  + +I SG+++L
Sbjct: 756 QEAKKKLAMGGGAGGDAGGAVKTIGSVQLMGRVVEGINAKDLKGMVDEAKTQIGSGVVVL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +   +  KAS++  VT+DL+++ +AVDL RL ++ LGG GGGGRP MAQ+GGP+G+KA+ 
Sbjct: 816 ISTGEGGKASIVTGVTKDLVEKVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDGSKAED 875

Query: 888 AIAGVASFLK 897
           AI  +   L+
Sbjct: 876 AIKAIEGHLE 885


>gi|205830265|sp|Q11IW3|SYA_MESSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 887

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/894 (52%), Positives = 625/894 (69%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL+FF+KNGHE++ S  L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D +RL +TVY  D+EA   W+KI+GL  ++IIRI T+DNFW+M +TGPCGPCSEIFFD  
Sbjct: 121 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+EQ +  ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI A+E+  G++ EG    +++VI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      +G+ + L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+  FN
Sbjct: 361 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WFS+K++ GAT F+GY+                  
Sbjct: 420 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V+ G +VE A  G++V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 462 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I + QKK EG+FVH   V++G +R    + L +D++ R ++  NHSATHLLH AL  
Sbjct: 517 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + PD LRFD +H KPI   EL+ IED  N+++ QN PVVTR+M  +DA
Sbjct: 577 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV++TG+I L++I+ E 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG  AR +L  Q+ +LK+ AS LKVS G+++ R+E + EE RKL  +L
Sbjct: 697 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 756

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL L     +       ++  V F+  ++  +  K+LK + D  +K + SG+++ 
Sbjct: 757 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG S+E KASV++ VT+DL  RF+AVDL R ++  +GG GGGGRP MAQ+GGP+
Sbjct: 817 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 870


>gi|298292138|ref|YP_003694077.1| alanyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928649|gb|ADH89458.1| alanyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 883

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/905 (51%), Positives = 625/905 (69%), Gaps = 33/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR TFL++F KNGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRATFLDYFAKNGHQVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+EF+L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIEFAWNLITREFEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY ED+EAF LWK+I+GL   KI+RI T+DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PVEKLMVTVYHEDDEAFSLWKRIAGLPDSKIVRIATSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS + +G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER++ VLQ 
Sbjct: 181 DHIPGGPPGSPDADGDRFIEIWNLVFMQFEQLPGGERLNLPRPSIDTGMGLERISAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDL + L  A E++T +  +G    +HRVI DHLR+S+FL+ADG+LP+NEGRGY
Sbjct: 241 THDNYEIDLMRALTGAVEEMTDVPADGPQKASHRVIADHLRASTFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+P L  EMG A+PE+++A+ L+ ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMHRLVPILVREMGRAFPEIVRAEPLVTETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +L+     LG     +G+ AFKLYDT+G PLD+ +D L ARG+  +D+ SFN
Sbjct: 361 KTLERGLSILETESEGLGAGAKFSGETAFKLYDTYGFPLDLTEDALRARGV-NVDVDSFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   T+ +WF+++E+ G T+F+GY                   
Sbjct: 420 AAMERQRAEARASWAGSGEAATDTVWFAVREEVGPTEFLGYG------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                T      V A+V +G+ VE   +G +  VV +QTPFY E+GGQ+GDTG   G+ G
Sbjct: 462 -----TETAEGTVTALVTEGKRVETLPAGARGLVVLNQTPFYGESGGQVGDTGTMSGEGG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           ++L++T  QKK   IF H   VE G L     L L +D + R+ +  NHSATHLLH AL 
Sbjct: 517 LKLRVTGTQKKLGDIFAHEVEVEEGTLTIGAPLALFVDGERRQAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H KP+ +AELK++ED  N I+ +N PVVTR+M  +D
Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPVEAAELKAVEDIANRIVLRNEPVVTRLMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI SGA AL G KY D VRVVS+  +  +G  +S  LCGGTHV+ TG+I L+ ++ ES++
Sbjct: 637 AIESGARALFGEKYGDEVRVVSMGTDPGNGAPYSVELCGGTHVARTGDIGLVSVLGESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEA+TG  AR HL  Q   L+  A  L+   G V  R+ ++ EE RKL  +L  
Sbjct: 697 GAGVRRIEAMTGDAARHHLNAQSRALQGAADVLRAPVGEVEARIAQLVEERRKLERELGD 756

Query: 775 AKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           AKRKL +      +     +  V  ++  +S +D K+LKS+ D  +K+I SGI+ +VG++
Sbjct: 757 AKRKLAMGGGAASEEPARTVGAVKLLARQVSGIDLKDLKSLADEGKKRIGSGIVAIVGVT 816

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +E +A +++ VT+DL  +++AV L R  A+ LGG GGGGRP MAQ+GGP+G +A +A+A 
Sbjct: 817 EEGRAGLVVGVTDDLTGKYDAVALVRRGAEALGGKGGGGRPDMAQAGGPDGGRAAEALAA 876

Query: 892 VASFL 896
           + + L
Sbjct: 877 IENAL 881


>gi|110633619|ref|YP_673827.1| alanyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|110284603|gb|ABG62662.1| alanyl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 909

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/894 (52%), Positives = 625/894 (69%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL+FF+KNGHE++ S  L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 23  MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 83  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 142

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D +RL +TVY  D+EA   W+KI+GL  ++IIRI T+DNFW+M +TGPCGPCSEIFFD  
Sbjct: 143 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 202

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+EQ +  ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 203 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 262

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI A+E+  G++ EG    +++VI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 263 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 322

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 323 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 382

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      +G+ + L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+  FN
Sbjct: 383 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 441

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WFS+K++ GAT F+GY+                  
Sbjct: 442 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 483

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+V+ G +VE A  G++V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 484 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 538

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I + QKK EG+FVH   V++G +R    + L +D++ R ++  NHSATHLLH AL  
Sbjct: 539 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 598

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + PD LRFD +H KPI   EL+ IED  N+++ QN PVVTR+M  +DA
Sbjct: 599 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 658

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV++TG+I L++I+ E 
Sbjct: 659 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 718

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG  AR +L  Q+ +LK+ AS LKVS G+++ R+E + EE RKL  +L
Sbjct: 719 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 778

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL L     +       ++  V F+  ++  +  K+LK + D  +K + SG+++ 
Sbjct: 779 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 838

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG S+E KASV++ VT+DL  RF+AVDL R ++  +GG GGGGRP MAQ+GGP+
Sbjct: 839 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 892


>gi|328543180|ref|YP_004303289.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum
           SL003B-26A1]
 gi|326412926|gb|ADZ69989.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum
           SL003B-26A1]
          Length = 887

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/895 (52%), Positives = 616/895 (68%), Gaps = 38/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KNGH+++ S  L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSAFLDYFAKNGHQVVESGPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRDYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKEF L
Sbjct: 61  AATSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 AKDRLLVTVFAEDDEAHGLWKKIAGFSDDRIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+EE G+R+IEIWNLVFMQ+E Q  Q R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EHIWGGPPGSAEEDGDRFIEIWNLVFMQYE-QTPQARLPLPRPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS   TG++ +G+   +HRVI DHLRSS FLIADG+LP+NEGRGY
Sbjct: 240 VHDNYDIDLFRALISASVNATGVEADGSARASHRVIADHLRSSCFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  EPLM  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGAQEPLMWRLVPALIREMGRAYPELVRAEALITETLRLEEGRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L +   L+G+ AF+LYDT+G PLD+ QD L ARG+ G+D   F 
Sbjct: 360 KTLERGLGLLDAATVDLSEGGELDGETAFRLYDTYGFPLDLTQDALRARGI-GVDTAGFA 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   T+ +WF LKEK GAT+F+GY+  R               
Sbjct: 419 AAMERQKAEARAAWAGSGEAATDAVWFGLKEKCGATEFLGYEAER--------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G  V E  +GQ    VF+QTPFY E+GGQ+GDTG     G+
Sbjct: 464 --------AEGAVAALVADGREVSELATGQSGFAVFNQTPFYGESGGQVGDTGSLHALGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++TD QKKA+G+FVH   VE G L   ++L + +D   R  +  NHSATHLLH AL  
Sbjct: 516 KARVTDTQKKADGLFVHAVTVEEGTLSVGLALDMIVDPDRRTAIRSNHSATHLLHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP++  ELK +ED  N+I+ QN  V TR+M  ++A
Sbjct: 576 VLGGHVAQKGSLVSPERLRFDFSHPKPMSEDELKVVEDYANEIVLQNAAVETRLMAVDEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I SGA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ +V+E 
Sbjct: 636 IESGAMALFGEKYGDEVRVVSMGTALHGDKAGKAYSVELCGGTHVRRTGDIGLVRLVTEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG  AR++L  QD +++ LA  LKV   +V  RV ++ E+ R+L  +L
Sbjct: 696 AVAAGVRRIEALTGPVARAYLDEQDARVRELAGLLKVGAADVTARVAQLVEDRRRLEREL 755

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL +              +  +  M+ I+  ++ K+LK + D    ++ SG+++L
Sbjct: 756 AEAKKKLAMGGGGGEAGAAVVKMVGSLRLMARIVEGINPKDLKGLADETMAQVGSGVVVL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + ++++ KA+++  V++DL DR +AVDL RL ++ LGG GGGGRP MAQ+GGP+G
Sbjct: 816 ISVAEDGKAAIVTAVSKDLTDRVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDG 870


>gi|2500957|sp|P70865|SYA_BARBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1568622|gb|AAB09037.1| AlaS [Bartonella bacilliformis]
          Length = 886

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/909 (52%), Positives = 637/909 (70%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVDFKNVFTGLEKHSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+ A  LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ +K++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++ G+K  G+   +HRVI DHLRSS+FLIADGI+P+NEGRGY
Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  + LM  L+P L +EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   +HL + +  NG+VAFKLYDT+G PLD+ QD L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE +WFS++++ GAT+F+GY+                  
Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+++ GE+V+    GQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK + +F+H   ++ G  +    + L +D   RR++  NHSATHLLH +L  
Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV Q GS ++PD LRFD +H K I+S ELK IED  NDI+ QN  V TR+M  +DA
Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRV+S+    E  G     S  LCGGTHV  TG+I L++I+SE+
Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S+ AG+RRIEA+T   AR +L GQD ++  +A  LK S  +V  RV+ + +E RKL  +L
Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756

Query: 773 IHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +++K+ LN   ++       I  ++FM  ++S +  K+LK+++D+ +KKI SG++  +
Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S++ K S ++ VT+DL D  NAVDL R+ +  LGG GGGGR  MAQ+GG  G KAD+A
Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876

Query: 889 IAGVASFLK 897
           +  +   LK
Sbjct: 877 LVALKDSLK 885


>gi|121601991|ref|YP_989027.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|205829988|sp|A1USS4|SYA_BARBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120614168|gb|ABM44769.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 886

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/909 (52%), Positives = 637/909 (70%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKHSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+ A  LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ +K++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++ G+K  G+   +HRVI DHLRSS+FLIADGI+P+NEGRGY
Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  + LM  L+P L +EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   +HL + +  NG+VAFKLYDT+G PLD+ QD L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE +WFS++++ GAT+F+GY+                  
Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     I+ A+++ GE+V+    GQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK + +F+H   ++ G  +    + L +D   RR++  NHSATHLLH +L  
Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV Q GS ++PD LRFD +H K I+S ELK IED  NDI+ QN  V TR+M  +DA
Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRV+S+    E  G     S  LCGGTHV  TG+I L++I+SE+
Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S+ AG+RRIEA+T   AR +L GQD ++  +A  LK S  +V  RV+ + +E RKL  +L
Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756

Query: 773 IHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +++K+ LN   ++       I  ++FM  ++S +  K+LK+++D+ +KKI SG++  +
Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S++ K S ++ VT+DL D  NAVDL R+ +  LGG GGGGR  MAQ+GG  G KAD+A
Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876

Query: 889 IAGVASFLK 897
           +  +   LK
Sbjct: 877 LVALKDSLK 885


>gi|148256734|ref|YP_001241319.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|205829994|sp|A5EML9|SYA_BRASB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146408907|gb|ABQ37413.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
          Length = 896

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/918 (51%), Positives = 625/918 (68%), Gaps = 44/918 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS E +G+R+IEIWNLVFMQ+EQ     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKVWGGPPGSPEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +T    +G    + RVI DHLR+SSFLI+DG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPELI+A+ LI+ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEALIKETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   S L K ++ +GDVAF LYDT+G PLD+ QD L +RG++ +D  SF 
Sbjct: 361 KTLERGLAILDEKSSTLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGIS-VDQASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR++ARA   G G   TE +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQRAKARAAWAGSGEAATENVWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  VE   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 462 -----TETAEGAVTALVKDGAEVEGLKAGESGAIVLNQTPFYGESGGQVGDTGVMSGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++ITD QKKA  +FVH   VE+G L+   +L L +D+  R  +  NHSATH+LH AL  
Sbjct: 517 RVRITDTQKKAGDLFVHIGTVEQGTLKLGAALQLEVDHGRRSAIRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS ++PD LRFD  H KPI++ EL  +ED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFAHPKPISAEELARVEDIANDVVLENAEVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSA---------LCGGTHVSSTGEIMLL 708
             +GA AL G KY D VRVVS+     D   ++ A         LCGGTHV  TG+I L+
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDQASNAQASNAMGWSVELCGGTHVKRTGDIGLI 696

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SES++ +G+RRIEA+T + AR+H        K+ A+ L+ +   V  R+  + EE +
Sbjct: 697 AVTSESAVSSGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARIAALMEERK 756

Query: 769 KL--QLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           KL  +L  A++KL +              ++A V  M+  +  V+ K+LKS++D  +K++
Sbjct: 757 KLERELSDARKKLAMGGGAAAGGSASGIREVAGVKLMARAVEGVEMKDLKSLVDEAKKQL 816

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            SG++ +VG +++ KA V++ VT DL  RFNAV+L R +++ LGG GGGGRP MAQ+GGP
Sbjct: 817 GSGVVAIVGRAEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGP 876

Query: 881 NGNKADQAIAGVASFLKK 898
           +G+KA+ A+A + S + +
Sbjct: 877 DGSKAEAALAAIESAISR 894


>gi|90423082|ref|YP_531452.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|122476792|sp|Q218Q3|SYA_RHOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|90105096|gb|ABD87133.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 890

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/909 (51%), Positives = 630/909 (69%), Gaps = 40/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNEIRSAFLNYFGKDGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKERLLVTVFSEDDEAFALWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS EE G+R+IEIWNLVFMQF+Q    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPEEDGDRFIEIWNLVFMQFDQIAPGQRNPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI+A  ++TG   +G +  + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFQALIRAIAELTGADPKGEHKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG TEPLM  L+ AL  EMG AYPEL++A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGATEPLMWRLVWALVREMGQAYPELVRAEPMIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL++LD   S L K ++ +G+ AF LYDT+G PLD+ QD L  RG++ +DI SF 
Sbjct: 361 KTLDRGLIILDEKSSTLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L+E+ GAT+F+GY+                  
Sbjct: 420 DAMDRQRAKARASWAGSGDTATETVWFGLREQLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G+ V++   G+   +V +QTPFYAE+GGQ+GDTG   G+G+
Sbjct: 462 -----TETAEGVVAALVKDGQKVDQLKVGEAGAIVLNQTPFYAESGGQVGDTGVMTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE+G L  + +L+L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTETQKKAHDLFVHLGTVEQGTLTPDTALLLEVDHTRRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS +  D LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAEDRLRFDFVHQKPISADELRRVEDIANEVVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV++        S+A      LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVTMGKSARQHGSNALGWSVELCGGTHVRRTGDIGLISITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ +G+RRIEA+TG+ AR       +  K+ A+ L+ S  ++  RV  + +E +KL  +
Sbjct: 697 SAVASGVRRIEALTGRFARQSANAAIDTAKATAAELRTSVDDMPARVAALMDERKKLERE 756

Query: 772 LIHAKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  A++KL            +    ++  V  ++  +  ++ K+LKS++D  +K++ SG+
Sbjct: 757 LAEARKKLAMGGGGAAAANGEAGVREVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I LV  S + K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 IALVATSADGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876

Query: 885 ADQAIAGVA 893
           A  A+  +A
Sbjct: 877 AQAALDAIA 885


>gi|205830051|sp|B2IHX3|SYA_BEII9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 898

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/911 (52%), Positives = 622/911 (68%), Gaps = 43/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+ FDL
Sbjct: 61  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G    KIIRI T+DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 121 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+ E+G+R++E WNLVFMQFEQ+   +R  LPK SIDTGMGLER+A +LQ 
Sbjct: 181 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A  Q TG+  +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +L+    HL +  +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+  F 
Sbjct: 361 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR+ AR    G G   T+  WF+L+E+ GAT F+GYD                  
Sbjct: 420 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++++AI+Q G+ V    +GQ   +V +QTPFY E+GGQ+GDTG  I  G+
Sbjct: 462 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ +  KK   +F+H  IVE G +   + +   +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD +H KP+T  E   IED  N +I +N PV T++M+ EDA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--------DGGV---HSSALCGGTHVSSTGEIMLL 708
           + SGA AL G KY D VRVVS+ Y+        DG +    S  LCGGTHV+ TG+I LL
Sbjct: 637 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 696

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES++ AG+RRIEA TG  AR HL  Q   L SLA+ LK  +     R+  + EE R
Sbjct: 697 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 756

Query: 769 KL--QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL  +L  A++KL +     N  D    +I  + F    ++ V+ K+LKS+ D  ++ I 
Sbjct: 757 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SGI+ +VG+  + KASV++ VT+DL+DRF+AV L RL+A  LGG GGGGR  +AQ+GGP+
Sbjct: 817 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 876

Query: 882 GNKADQAIAGV 892
           G  A+ A+  +
Sbjct: 877 GEAAEAALTAI 887


>gi|182679359|ref|YP_001833505.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635242|gb|ACB96016.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 901

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/911 (52%), Positives = 622/911 (68%), Gaps = 43/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 4   MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+ FDL
Sbjct: 64  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G    KIIRI T+DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 124 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 183

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+ E+G+R++E WNLVFMQFEQ+   +R  LPK SIDTGMGLER+A +LQ 
Sbjct: 184 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A  Q TG+  +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 244 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 304 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +L+    HL +  +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+  F 
Sbjct: 364 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 422

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR+ AR    G G   T+  WF+L+E+ GAT F+GYD                  
Sbjct: 423 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++++AI+Q G+ V    +GQ   +V +QTPFY E+GGQ+GDTG  I  G+
Sbjct: 465 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 519

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ +  KK   +F+H  IVE G +   + +   +D+  R  +  NHSATHLLH AL  
Sbjct: 520 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 579

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD +H KP+T  E   IED  N +I +N PV T++M+ EDA
Sbjct: 580 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 639

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--------DGGV---HSSALCGGTHVSSTGEIMLL 708
           + SGA AL G KY D VRVVS+ Y+        DG +    S  LCGGTHV+ TG+I LL
Sbjct: 640 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 699

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES++ AG+RRIEA TG  AR HL  Q   L SLA+ LK  +     R+  + EE R
Sbjct: 700 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 759

Query: 769 KL--QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL  +L  A++KL +     N  D    +I  + F    ++ V+ K+LKS+ D  ++ I 
Sbjct: 760 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 819

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SGI+ +VG+  + KASV++ VT+DL+DRF+AV L RL+A  LGG GGGGR  +AQ+GGP+
Sbjct: 820 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 879

Query: 882 GNKADQAIAGV 892
           G  A+ A+  +
Sbjct: 880 GEAAEAALTAI 890


>gi|319408736|emb|CBI82393.1| Alanyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 889

 Score =  921 bits (2380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/911 (52%), Positives = 637/911 (69%), Gaps = 38/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+ IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+     
Sbjct: 1   MNSVNKIRSTFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQLSCSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KISGL  +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHSDDVAAQLWRKISGLPDEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R++EIWNLVFMQ+EQ +K +R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DKIFGGPPGSADEDGDRFVEIWNLVFMQYEQVSKDKRIELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI+ S+++TG++  G+ +V+HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFSALIRESQRITGVEATGDFVVSHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM YA  L   E LM  L+PAL  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRYAHFLDAKELLMWRLVPALIREMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+    HL + +  NG+VAFKLYDT+G PLD+ QD L  RG++ +D+ +FN
Sbjct: 361 KTLERGLRLLNEESVHLKEGDCFNGEVAFKLYDTYGFPLDLTQDALRHRGIS-VDVNAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++ ARA+  G G   TE +WFS++++ G T+F+GY+                  
Sbjct: 420 KAMEHQKAEARANWSGSGESVTETVWFSVRDQVGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     ++ A++  GEIV++  SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 462 -----TEKAEGVITALICDGEIVDKVSSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+FVH   V+ G  +T   + L +D   RR++  NHSATH+LH AL  
Sbjct: 517 IFEVHDTQKKAKGVFVHIGEVKSGQAKTHDCVELAVDCVRRRKIRANHSATHILHKALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS ++PD LRFD +HS  I   +LK IED  N+I+ QN  V+TR+M  +DA
Sbjct: 577 TLGDHVVQKGSFVSPDRLRFDFSHSGQILLKDLKKIEDLANEIVLQNSEVITRLMTVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY+D VRVVS+     E  +    S  LCGGTHV  TGEI L++IVS S
Sbjct: 637 ISEGAIALFGEKYSDEVRVVSMGKRHEEIGEKDYWSIELCGGTHVHRTGEIGLIHIVSVS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKL--Q 771
           S+ AG+RRIEA+TG  AR +   Q ++L  +A+ LK+ S  N+   ++ + ++YR++  +
Sbjct: 697 SVAAGVRRIEALTGTAARLYFRNQYKQLYDIAALLKMPSVFNLSKNIQGLLDDYRRIGKE 756

Query: 772 LIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L + + K+  N      +K     I  ++FM  +I  +  K+LK+++D+ +K+I SG++ 
Sbjct: 757 LSNLRTKIAFNDGATKDNKADIKIINGISFMGRVIQNISPKDLKTLVDSGKKQIGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +GIS+  K SV++ VT+DL+DR +AVDL R+ +  LGG GGGGRP MAQ+GGP G+KA 
Sbjct: 817 FIGISENGKGSVVVGVTDDLVDRLSAVDLVRIVSDTLGGKGGGGRPDMAQAGGPQGDKAY 876

Query: 887 QAIAGVASFLK 897
            AIA +  FL+
Sbjct: 877 DAIAALEVFLE 887


>gi|217979627|ref|YP_002363774.1| alanyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505003|gb|ACK52412.1| alanyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 895

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/913 (51%), Positives = 614/913 (67%), Gaps = 40/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNGVNEIRAGFLDYFKKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+EF L
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EAF LWKKI+G    KIIRI ++DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 121 PKDRLLVTVYHTDDEAFDLWKKIAGFPDSKIIRIASSDNFWAMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 ERLKGGPPGSPDEDGDRFLEFWNLVFMQFEQLGPGERIDLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A    TG+  +G    +HRVI DHLR+ +FLIADG+ P+NEGRGY
Sbjct: 241 VTSNYDIDLMRALIVAIAAATGVDPDGPQKASHRVIADHLRACAFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LL   EPLM  L+P L  EMG AYPELI+A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLSAREPLMWRLVPVLSREMGQAYPELIRAESLIVETLRLEEARFI 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +LD  +  L +   L G VAFKLYDT+G PLD+ QD L AR LA +D+  FN
Sbjct: 361 DTLARGLSILDEAVRDLPEGAPLPGQVAFKLYDTYGFPLDLTQDALRARSLA-VDVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF++K++ GAT F+GY+                  
Sbjct: 420 TAMERQRADARRAWAGSGEAATETLWFAIKDEAGATDFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G+ VE    G+   ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 462 -----AEQAEGVVAALVKDGKPVERLNKGETGAIILNQTPFYAESGGQVGDTGVMSAAGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD +KK   +FVH  IVE G +   ++L L++D+  R  +  NHSATHLLH +L  
Sbjct: 517 RFRVTDTKKKLGDLFVHEGIVEEGEITPGLALELSVDHARRSAIRANHSATHLLHESLRL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  D LRFD TH KPI+  EL  +ED  N  +  N PVVTR+M  ++A
Sbjct: 577 VLGDHVAQKGSLVADDRLRFDFTHLKPISPEELTRVEDIANRAVTDNAPVVTRLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVH---SSALCGGTHVSSTGEIMLLY 709
           IASGA AL G KY D VRVV++ Y        DGG +   S  LCGGTHV+ TG+I L+ 
Sbjct: 637 IASGARALFGEKYGDEVRVVTMGYAQDREDSGDGGANRAFSVELCGGTHVARTGDIGLIA 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SES++ AG+RRIEA T   AR HL  + +KL+ +A  LK S+ +   R+  + EE RK
Sbjct: 697 ITSESAVAAGVRRIEAKTAAAARRHLNARSDKLEHIAVLLKSSEDDAEKRLAALLEERRK 756

Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L  A++KL +   + +     +I  V F    +S VD K+LKS+ D  ++ + SG+
Sbjct: 757 LDRELADARKKLAMGGGEKAAAEAQEIGGVKFFGRAVSGVDLKDLKSLADEAKQTVGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + + G+  + KA V++ VT DL++RF++V L RL+A  LGG GGGGR  MAQ+GGPNG  
Sbjct: 817 VAIAGVDSDGKAGVVVGVTADLVERFDSVALVRLAATELGGKGGGGRRDMAQAGGPNGAG 876

Query: 885 ADQAIAGVASFLK 897
            D A+A +A+ L+
Sbjct: 877 VDAALAAIANGLR 889


>gi|86750846|ref|YP_487342.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|123292252|sp|Q2ITM9|SYA_RHOP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86573874|gb|ABD08431.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 891

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/901 (51%), Positives = 612/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF DQG
Sbjct: 121 KKDKLLVTVYHTDDEAASYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS EE G+R++E WNLVFMQ+EQ  K ER  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 EHIFGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKDERLPLPRPSIDTGMGLERMANILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFETDLFRSLIDATSSALGRGPGEEDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +GD AF LYDT+G PLD+ QD L  RG++ +DI SF 
Sbjct: 361 KTLDRGLAILDEKSASLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLREKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V  G+ V+   +G    +V +QTPFYAE+GGQ+GDTG   GDG+
Sbjct: 462 -----TETAEGVVTALVADGKEVDALKAGDSGAIVLNQTPFYAESGGQVGDTGVLSGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD  KKA  +FVH   VE G ++ + +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGAIKRDAALQLDVDHARRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITPDELRRVEDIANDIVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+     D G +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKTARDSGSNALGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ +G+RRIEA+TG+ AR          K  A+ L+ +  ++  R+  + EE +KL  +
Sbjct: 697 SAVASGVRRIEALTGRYARQSANAAINTAKQAAAELRTTVDDMPARIAALMEERKKLERE 756

Query: 772 LIHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L  A++KL +                ++  V  M+  +  ++ K+LKS++D  +K++ SG
Sbjct: 757 LSDARKKLAMGGGGAAGAADGGADVREVGGVKLMARAVEGIEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I LV  S++ K S+++ VT DL+ RF+AVDL R ++ VLGG GGGG+P MAQ+GGP+G+
Sbjct: 817 VIALVATSEDGKGSIVVGVTPDLVARFSAVDLVRTASVVLGGKGGGGKPDMAQAGGPDGS 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|75675479|ref|YP_317900.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|123613615|sp|Q3ST43|SYA_NITWN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|74420349|gb|ABA04548.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 891

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/901 (52%), Positives = 619/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAANGHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+ AF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLTATVYIDDDGAFDLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS E+ G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DRIPGGPPGSPEQDGDRFVEIWNLVFMQYEKLPDGSRPNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+D+ SF 
Sbjct: 361 KTLERGLSILDEKSASLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ GE  +   +G+   +V +QTPFY E+GGQ+GDTG  I DG+
Sbjct: 462 -----TEAAEGVVAALVKDGEEADTLKAGESGAIVLNQTPFYGESGGQVGDTGFLIADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD QKKA  +FVH   VE+G+L   M+L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTQKKAGDLFVHLGTVEQGVLAPGMALALEVDHDRRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISADELRCIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA------LCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+   D  G  S+A      LCGGTHV  TG+I L+ +V 
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGTDRHGAASNALGWSVELCGGTHVKRTGDIGLISVVG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES++ +G+RRIEA+TG +AR H     +  K+ A  L+ S  ++  R+  + EE +KL  
Sbjct: 697 ESAVASGVRRIEALTGHQARHHANHAIQLAKTAAGELRTSLDDMPARIASLMEERKKLER 756

Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L  A++KL +       +        +  +  M+  +  ++ K+LKS+ D  +K++ SG
Sbjct: 757 ELSEARKKLAMGGAASASSGATTGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|85715195|ref|ZP_01046179.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85698110|gb|EAQ35983.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 892

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/902 (52%), Positives = 617/902 (68%), Gaps = 42/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL FF  N H+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNFFAANDHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLTATVYIDDDEAFDLWKKIAGLPESRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ+E+ +   R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DRIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLSDGSRPNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG AYPEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAYPELQRARSLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+D+ SF 
Sbjct: 361 KTLDRGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+VQ G+  +   +G+   +V +QTPFY E+GGQ+GDTG    DG+
Sbjct: 462 -----TESAEGVVVALVQDGKETDILKAGESGAIVLNQTPFYGESGGQVGDTGALTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QKKA  +FVH  IVE+G+L   M+L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 CFRVTDTQKKAGDLFVHLGIVEQGVLAPGMALALEVDHDRRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI+  EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISGDELRRIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA------LCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+      G  S+A      LCGGTHV  TG+I L+ ++S
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGAGRQGAPSNALGWSVELCGGTHVKRTGDIGLISVIS 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES++ +G+RRIEA+TG RAR H     +  K+ A  L+ S  ++  R+  + EE +KL  
Sbjct: 697 ESAVASGVRRIEALTGHRARHHANDAIQLAKTAAGELRTSLDDMPARIAALVEERKKLER 756

Query: 771 QLIHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +L  A++KL +        +        +  +  M+  +  ++ K+LKS+ D  +K++ S
Sbjct: 757 ELSEARKKLAMGGGAASASSGAATGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGS 816

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G++ LV  S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G
Sbjct: 817 GVVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDG 876

Query: 883 NK 884
            K
Sbjct: 877 AK 878


>gi|91976212|ref|YP_568871.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123735560|sp|Q13AB9|SYA_RHOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91682668|gb|ABE38970.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 891

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/901 (52%), Positives = 616/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYSEDDEAFGLWKKIAGLPESKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSLEEDGDRFIEIWNLVFMQFEQVAPGNRTPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A  ++TG   +G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYEIDLFQALIRAIAELTGADPQGEQKGSLRVIADHLRAASFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAEAMIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L K ++ +GD AF LYDT+G PLD+ QD L  RG++ +DI SF 
Sbjct: 361 KTLERGLTILDEKSGSLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L++K GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLRDKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G+ VE   +G    +V +QTPFYAE+GGQ+GDTG   G+G+
Sbjct: 462 -----TETAEGVVTALVKDGKEVEALKAGDAGAIVLNQTPFYAESGGQVGDTGVLTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD  KKA  +FVH   VE G ++ E +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGTVKPEAALALEVDHSRRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITQDELRRVEDIANDIVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+        S+A      LCGGTHV  TG+I L+ +  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKASREHGSNAFGWSVELCGGTHVRRTGDIGLISVTGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ +G+RRIEA+TG+ AR          K+ A+ L+ +  ++  R+  + +E +KL  +
Sbjct: 697 SAVASGVRRIEALTGRHARQSANAAMATAKAAAAELRTTLDDMPARIASLMDERKKLERE 756

Query: 772 LIHAKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L  A++KL                   +  V  ++  +  ++ K+LKS++D  +K++ SG
Sbjct: 757 LSDARKKLAMGGSGAAGAADGGADVRDVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+
Sbjct: 817 VIALVAKSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGS 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|49474375|ref|YP_032417.1| alanyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|59798531|sp|Q6FZF1|SYA_BARQU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49239879|emb|CAF26277.1| Alanyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 888

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/913 (51%), Positives = 637/913 (69%), Gaps = 41/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++F  NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+   + 
Sbjct: 1   MNSVNSIRSTFLDYFHLNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPCKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR GGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRVGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KIS LS +KI+RI T DNFW+M ETGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHSDDVAAELWRKISNLSDEKIVRIATVDNFWAMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ EG +R+IEIWNLVFMQ+EQ +K+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSANEGGDRFIEIWNLVFMQYEQVSKEERVELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++TG++  G+ I +HRVI DHLRS +FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRALIGASQEITGVEATGDFIASHRVISDHLRSCAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGVKEPLMWRLLPVLVREMGQAYPELVRAESLISETLKLEEMRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   S+L + +  NG++AFKLYDT+G PLD+ QD L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASSNLKEGDHFNGEIAFKLYDTYGFPLDLTQDALRCRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE IWF+++++ GAT+F+GY++ +               
Sbjct: 420 KAMQRQKTEARANWSGSGEAVTETIWFAVRDRVGATEFLGYEIEKA-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A++  G++V+   SGQK  +V +QTPFY E+GGQ+GD+G       
Sbjct: 466 ---------EGIITALICDGKVVDHISSGQKAIIVVNQTPFYGESGGQIGDSGIISSGCF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK+ G+F+H   V+ G  +T   + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQKKSNGVFIHIGEVKSGQAKTFECVELTVDVVRRQKIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS + PD LRFD +H K ++S ELK IED  NDI+ QN  V T +M  +DA
Sbjct: 577 ILGPHVTQKGSLVLPDRLRFDFSHPKSVSSEELKKIEDLANDIVLQNSEVTTHLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+    E  G+    S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNPLEPEGLKKRWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
           S+ AG+RRIEA+TG  AR +   QDE+++ ++S LK    +V  RV  +  EY +L    
Sbjct: 697 SVAAGVRRIEALTGTAARLYFNRQDERIREISSLLKTVPADVGERVSNLLHEYNRLSQAC 756

Query: 773 IHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           I  ++K+ L       N ED++   I  ++FM  ++  +  ++LK+++D  +K+I SG++
Sbjct: 757 IELRKKIILSGNTIKNNQEDITI--INGISFMGRVVRNILPRDLKALVDDGKKQIGSGVV 814

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             + +++  K S ++ VT DL D+ NAV+L  + + VLGG GGGGRP MAQSGGP G+KA
Sbjct: 815 AFISVAENGKGSAVVGVTNDLTDKLNAVNLIHILSDVLGGKGGGGRPDMAQSGGPEGDKA 874

Query: 886 DQAIAGVASFLKK 898
             A+A + + L+K
Sbjct: 875 VGALAALRASLEK 887


>gi|146341851|ref|YP_001206899.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|205829995|sp|A4YXQ6|SYA_BRASO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146194657|emb|CAL78682.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
          Length = 891

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/897 (52%), Positives = 613/897 (68%), Gaps = 39/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+E +G+R+IEIWNLVFMQ+EQ     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKIWGGPPGSAEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +T    +G    + RVI DHLR+SSFLI+DG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPELI+A+ LI+ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEGLIKETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG++ +D  SF 
Sbjct: 361 KTLERGLAILDEKSASLSKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGIS-VDQASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G   TE +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQKAKARAAWAGSGEAATETVWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V+   +G+   +V +QTPFY E+GGQ+GDTG   G+G+
Sbjct: 462 -----TETAEGAVTALVKDGAEVDSLKAGESGAIVLNQTPFYGESGGQVGDTGVLTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++ITD QKKA  +F H   VE+G L+    L L +D+  R  +  NHSATH+LH AL  
Sbjct: 517 RVRITDTQKKAGDLFAHIGTVEQGTLKLGTPLQLDVDHIRRSAIRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS ++PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFVHPKPITAEELARVEDIANDVVLENAEVTTRLMGLDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+     D G +    S  LCGGTHV  TG+I L+ + SE
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDHGNNAMGWSVELCGGTHVKRTGDIGLIAVTSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ +G+RRIEA+T + AR+H        K+ A+ L+ +   V  R+  + EE +KL  +
Sbjct: 697 SAVASGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARITALMEERKKLERE 756

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L  A++KL +              ++A +  M+  +  V+ K+LKS++D  +K++ SG++
Sbjct: 757 LSDARKKLAMGGGAAAGGAAAGIREVAGIKLMARAVDGVEVKDLKSLVDEAKKQLGSGVV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +VG S++ KA V++ VT DL  RFNAV+L R +++ LGG GGGGRP MAQ+GGP+G
Sbjct: 817 AIVGRSEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGPDG 873


>gi|254505107|ref|ZP_05117258.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222441178|gb|EEE47857.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 885

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/912 (50%), Positives = 623/912 (68%), Gaps = 46/912 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ FL++F+ N HE++ S  L+P NDPTLMF N+GM  FKN+FTG E   Y  
Sbjct: 1   MTGVNEIRSAFLDYFKANDHEVVDSGPLVPRNDPTLMFANAGMNQFKNVFTGLETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AVTAQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED++A   WKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLLVTVYAEDDDAAVFWKKIAGLSDDKIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PG+ EE G+R++EIWNLVFMQ+E Q    R  LP+ SIDTGMG+ER+ATVLQ 
Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQYE-QTPDSRLDLPRPSIDTGMGIERLATVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+ LI ASE  TG++  G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFRALISASEHETGVEASGDALSSHRVISDHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  +PLM  L+P+L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELTRAEALITETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L     L+G+ AFKLYDT+G PLD+ QD L  R +  +D   F+
Sbjct: 360 KTLERGLGLLDTATEDLTAGGQLDGETAFKLYDTYGFPLDLTQDALRVRDIT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WF++KEKYGAT F+GY+                  
Sbjct: 419 AAMERQKAEARAAWSGSGGAATEAVWFAMKEKYGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     IV  +        E  +G+   VV +QTPFY E+GGQ+GDTG     G+
Sbjct: 461 -----TEVAEGIVAGLAADDAETNELKAGETGFVVLNQTPFYGESGGQVGDTGVMTAPGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QKKA+G+FVH   V+ G +  E++L L +D+  R  +  NH+ATHL+H AL  
Sbjct: 516 KITVTDTQKKADGLFVHVVTVDEGTVTPELALELKVDHDRRSAVRSNHTATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS ++PD LRFD +H KP++  EL  +E   N+II QN  V TR+M  +DA
Sbjct: 576 VLGTHVAQKGSLVSPDRLRFDFSHPKPMSDDELAIVETFANEIILQNASVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY + VRVVS+       + G  +S  LCGGTHV  TG+I L+ +VSE 
Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGDKTGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG  AR++L  QD++L+ +A  LKV  G+V  RV ++ EE RKL  +L
Sbjct: 696 AVAAGVRRIEALTGAEARTYLDTQDKRLREVAGILKVGTGDVPSRVAQLVEERRKLEKEL 755

Query: 773 IHAKRKLQLN--------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             A++KL +         V+D    K+     M+  +  ++ K+LK + D  + ++ SG+
Sbjct: 756 ADARKKLAMGGGADGGTPVKDAGSFKL-----MARTVEGINPKDLKGMADEAKTQLGSGV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L+ ++++ KA+++  VT DL ++ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G+K
Sbjct: 811 VVLINVAEDGKAAIVTAVTRDLTEKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGSK 870

Query: 885 ADQAIAGVASFL 896
           A+ A++ + + L
Sbjct: 871 AESAVSAIEAHL 882


>gi|205371825|sp|Q89I89|SYA_BRAJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/909 (51%), Positives = 622/909 (68%), Gaps = 41/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA ++Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G       + + RVI DHLRSS+FL++DG+LP+NEGRGY
Sbjct: 241 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG+ G+D  +F 
Sbjct: 361 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGI-GVDQSAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++AR    G G   +E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                T     +V A+V+ G+      +G+   +V +QTPFYAE+GGQ+GDTG  +G+ G
Sbjct: 462 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           ++ ++TD QKK   +FVH   VE G L+   +L L +D+  R  +  +HSATHL+H AL 
Sbjct: 517 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS + PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  ++
Sbjct: 577 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVS 712
           A  +GA AL G KY D VRVVS+     + G +    S  LCGGTHV  TG+I L+ +  
Sbjct: 637 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES++ +G+RRIEA+TG  AR H        K+ A+ L+ S  +V  R+  + EE +KL  
Sbjct: 697 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 756

Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L  A++KL +       N       ++ DV  M+  +  ++ K+LKS+ D  +K+I SG
Sbjct: 757 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ +VG++ + KA +++ VT DL  RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G 
Sbjct: 817 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 876

Query: 884 KADQAIAGV 892
           KA +A+A +
Sbjct: 877 KAPEALAAI 885


>gi|27380861|ref|NP_772390.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27354027|dbj|BAC51015.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 894

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/909 (51%), Positives = 622/909 (68%), Gaps = 41/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 3   MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L
Sbjct: 63  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 123 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 182

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA ++Q 
Sbjct: 183 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G       + + RVI DHLRSS+FL++DG+LP+NEGRGY
Sbjct: 243 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 303 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG+ G+D  +F 
Sbjct: 363 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGI-GVDQSAFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++AR    G G   +E IWF L+EK GAT+F+GY+                  
Sbjct: 422 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                T     +V A+V+ G+      +G+   +V +QTPFYAE+GGQ+GDTG  +G+ G
Sbjct: 464 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 518

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           ++ ++TD QKK   +FVH   VE G L+   +L L +D+  R  +  +HSATHL+H AL 
Sbjct: 519 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 578

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS + PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  ++
Sbjct: 579 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 638

Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVS 712
           A  +GA AL G KY D VRVVS+     + G +    S  LCGGTHV  TG+I L+ +  
Sbjct: 639 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 698

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES++ +G+RRIEA+TG  AR H        K+ A+ L+ S  +V  R+  + EE +KL  
Sbjct: 699 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 758

Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L  A++KL +       N       ++ DV  M+  +  ++ K+LKS+ D  +K+I SG
Sbjct: 759 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 818

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ +VG++ + KA +++ VT DL  RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G 
Sbjct: 819 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 878

Query: 884 KADQAIAGV 892
           KA +A+A +
Sbjct: 879 KAPEALAAI 887


>gi|90420928|ref|ZP_01228833.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334903|gb|EAS48675.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 890

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/894 (52%), Positives = 612/894 (68%), Gaps = 39/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KN HE + SS L+P NDPTLMFTN+GMV FKN+FTG E   YQ 
Sbjct: 1   MSGVNEIRSAFLDYFAKNDHERVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVETRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL +TVY EDEEA  LW+KI+GLS D+IIRI+T+DNFW+M ETGPCGPCSEIFFD  
Sbjct: 121 PADRLLVTVYSEDEEAAALWRKIAGLSDDRIIRISTSDNFWAMGETGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQFEQ +   R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQFEQLSADNRVELPRPSIDTGMGLERIAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI + E   G + EG+++ +HRVI DHLRS++FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIASVEATIGSRAEGDSVASHRVIADHLRSTAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A++LG  EP++  +LP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAKMLGAREPVLYKMLPTLVAEMGRAYPELVRAEALISETLKLEERRFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL      +     L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+ +FN
Sbjct: 361 QTLDRGLSLLTDATEGMDAGAKLSGETAFKLYDTYGFPLDLTQDALRQRGIE-VDLDAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR    G G   +E +WF ++E+ GAT+F+GYD                  
Sbjct: 420 TAMERQKAEARKSWTGSGEAASETVWFPIRERVGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V  A +G +V +V +QTPFY E+GGQLGDTG   GDG+
Sbjct: 462 -----TERAEGSVMAVVRNGTEVPAAGAGDEVAIVLNQTPFYGESGGQLGDTGIMRGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QK AEG+FVH   V+ G ++  M L L +D+  R ++  NHSATHLLH  L  
Sbjct: 517 EIVIADTQKFAEGLFVHRGKVKSGTVKAGMPLDLIVDHGRRTKIRANHSATHLLHEGLRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHV+Q GS + P+ LRFD +H KPI   EL  +E   N I+ QN PV TR+M  +DA
Sbjct: 577 ILGSHVAQKGSMVAPERLRFDFSHPKPIEPGELAEVERLANGIVLQNAPVETRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV----EYEDGG-VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IASGA AL G KY D VRVVS+    E E  G   S  LCGGTHV++TG+I L++I+ ES
Sbjct: 637 IASGAMALFGEKYGDEVRVVSMGTGEEGEKAGKTFSIELCGGTHVNATGDIGLVHILGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TGQ AR HL+ QD +++ +AS LKVS  +   R+E + EE R+L+   
Sbjct: 697 AVGAGVRRVEALTGQAARDHLLAQDARVRQMASILKVSPADAPARLEAVVEERRRLEREL 756

Query: 775 AKRKLQLNV-------EDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           A+ + +L +       E  S  K +A V F+  +++ V  K+LK ++D  + ++ SG++ 
Sbjct: 757 AEARKRLALAGDGASGEGGSASKVVAGVGFLGRVLNGVAGKDLKGLVDEAKTQLGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            V +    KASV++ VT DL DRF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 817 FVSVDA-GKASVVVGVTADLTDRFDAVALVRDASVAIGGKGGGGRPDMAQAGGP 869


>gi|304391435|ref|ZP_07373377.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303295664|gb|EFL90022.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 884

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/906 (52%), Positives = 613/906 (67%), Gaps = 34/906 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F+KNGH  + SS L+P NDPTLMFT +GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSTFLSYFEKNGHAAVDSSPLVPRNDPTLMFTAAGMVQFKNLFTGLETRNYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+E+ +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEFAWNLLTEEYGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY +D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DASRLLVTVYHDDDEAFDLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFEQVTVDERVNLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI ASEQ TG+  + N   +HRVI DHLR+S FLIADG+LP NEGRGY
Sbjct: 241 THDNYEIDLFKALISASEQATGVGSDDNTRASHRVIADHLRASCFLIADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG A+PEL + + L+ ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHASLLGAQDPLMYRLVPALVAQMGEAFPELRRTQSLMTETLNLEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LLD   + L   + L+G VAFKLYDT+G PLD+ QD L  R +  +D   ++
Sbjct: 361 KTLTRGLDLLDTASADLKAGDALDGRVAFKLYDTYGFPLDLTQDALRRRDIT-VDTDEYS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQ++ ARA   G G    + IWF L+EK+GAT+F+GY+                  
Sbjct: 420 TAMEEQKAVARASWAGAGGAADDAIWFKLREKHGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V AI+Q G  V  A  G +V V+ +QTPFYAE+GGQ+GDTG  +    
Sbjct: 462 -----TEKAEGSVLAILQDGAEVSTAKKGDEVSVILNQTPFYAESGGQMGDTGTLVVGET 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L ITD +K+ +G+FVH   V+ G L+      L ID+  R +L  NHSATHL+H AL  
Sbjct: 517 KLTITDTKKRGDGLFVHMGTVDSGTLKVGDGASLEIDHARRSKLRSNHSATHLVHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS + P+ LRFD +HSKP+ + E++ IE   N+ + QN  V T +M  +DA
Sbjct: 577 TLGDHVSQKGSLVAPERLRFDFSHSKPVETEEMRRIEAMANEYVLQNSQVSTTLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           I  GA A  G KY D VRVVS+    E  +    S  LCGGTHV +TG+I L+ +V ES+
Sbjct: 637 IELGAQAQFGEKYGDEVRVVSMGKVGEGNEAKAWSLELCGGTHVKNTGDIGLVTVVGESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + +G+RRIEA+TGQ AR +L+ QDE L+S A+ LK +  +V  RV  + +E +KL  +L 
Sbjct: 697 VSSGVRRIEALTGQAAREYLLQQDELLRSTAAKLKTTPADVPTRVAALIDERKKLERELA 756

Query: 774 HAKRKLQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            AK++L L V+   + +   I  V F+  ++  V  ++LK ++D  + +I SG++ +   
Sbjct: 757 EAKKQLALGVDGGTEAAAEDIGGVQFVGRVLQGVSPRDLKGLVDEEKTRIGSGVVAIAAN 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +++ K +V++ VT+DL DRF+AV L R  ++ LGG GGGGRP MAQ+GGP+G   D A+ 
Sbjct: 817 NEDGKGAVVVGVTKDLTDRFDAVVLVRAGSEALGGKGGGGRPDMAQAGGPDGANVDAALD 876

Query: 891 GVASFL 896
            V + L
Sbjct: 877 AVRAAL 882


>gi|205830261|sp|Q1QMV7|SYA_NITHX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 891

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG    G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+DI SF 
Sbjct: 361 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G   TE IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G+  +   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 462 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD QKKA  +FVH   VE+G L   M+L L +D   R  +  NHSATHLLH AL  
Sbjct: 517 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+      G  S+A      LCGGTHV  TG+I L+ +  
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES++ +G+RRIEA+TG  AR H     +  K+ A  L+ +  ++  R+  + EE +KL  
Sbjct: 697 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 756

Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L  A++KL +       +        +  +  M+  +  ++ K+LK++ D  +K++ SG
Sbjct: 757 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|92117171|ref|YP_576900.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|91800065|gb|ABE62440.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14]
          Length = 897

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 7   MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 67  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 126

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 127 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 186

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 187 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 246

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG    G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 247 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 307 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 366

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+DI SF 
Sbjct: 367 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDIASFT 425

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G   TE IWF L+EK GAT+F+GY+                  
Sbjct: 426 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G+  +   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 468 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD QKKA  +FVH   VE+G L   M+L L +D   R  +  NHSATHLLH AL  
Sbjct: 523 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 582

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 583 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 642

Query: 660 IASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+      G  S+A      LCGGTHV  TG+I L+ +  
Sbjct: 643 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 702

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES++ +G+RRIEA+TG  AR H     +  K+ A  L+ +  ++  R+  + EE +KL  
Sbjct: 703 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 762

Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L  A++KL +       +        +  +  M+  +  ++ K+LK++ D  +K++ SG
Sbjct: 763 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 822

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 823 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 882

Query: 884 K 884
           K
Sbjct: 883 K 883


>gi|316932874|ref|YP_004107856.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315600588|gb|ADU43123.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 890

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/900 (51%), Positives = 617/900 (68%), Gaps = 40/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWELITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 NKHQLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATASALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+  +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK+GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKFGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+   +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEGVVMALVKDGTEVDALKAGDAAAIVMNQTPFYAESGGQVGDTGVLAADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +T+  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTETLKKAGDLFVHFGTVEQGTIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+     E+    +  S  LCGGTHV  TG+I L+ I +E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAAREHGSNALGWSVELCGGTHVKRTGDIGLVSITAE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ +G+RRIEA+TG+ AR +        K+ A+ L+ +  ++  R+  + +E +KL  +
Sbjct: 697 SAVASGVRRIEALTGRAARHNANAAISTAKTAAAELRTTLDDMPARIAALMDERKKLERE 756

Query: 772 LIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  A++KL +               +I  V  M+  +  ++ K+LK ++D  +K+I SG+
Sbjct: 757 LSEARKKLAMGGSASGDGAAASDVREIGGVKLMARTVQGIEIKDLKGLVDQGKKQIGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 IALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876


>gi|192292738|ref|YP_001993343.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286487|gb|ACF02868.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 889

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/899 (51%), Positives = 616/899 (68%), Gaps = 39/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+  +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+   +G+   ++ +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+     D G +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ AG+RRIEA+TG+ AR +        K  AS L+ +  ++  R+  + +E +KL  +
Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756

Query: 772 LIHAKRKLQLNVE---DLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L  A++KL +      D +   + D   +  M+  +  ++ K+LK ++D  +K++ SG+I
Sbjct: 757 LSEARKKLAMGGSASGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875


>gi|39936908|ref|NP_949184.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|48428511|sp|P61706|SYA_RHOPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39650765|emb|CAE29288.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 889

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/899 (51%), Positives = 614/899 (68%), Gaps = 39/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+  +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V A+V+ G  V+   +G+   ++ +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+     D G +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ AG+RRIEA+TG+ AR +        K  AS L+ +  ++  R+  + +E +KL  +
Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L  A++KL +      +        I  +  M+  +  ++ K+LK ++D  +K++ SG+I
Sbjct: 757 LSEARKKLAMGGSAAGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875


>gi|220925350|ref|YP_002500652.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219949957|gb|ACL60349.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 886

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/893 (51%), Positives = 616/893 (68%), Gaps = 35/893 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK +YQ 
Sbjct: 1   MSGVNEIRSTFLDYFAKHGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRLYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW+L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY EDE+A  LW+KI+G S D+IIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 DKDRLLVTVYAEDEDAATLWRKIAGFSDDRIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 PELWGGPPGSPDEDGDRFLEFWNLVFMQYEQIEPGNRVDLPRPSIDTGMGLERIAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A     G   EG    ++RVI DHLR+SSFL+ADG+LP NEGRGY
Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRAPEGPQTASYRVIADHLRASSFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +P+M  L+P L  EMG AYPEL +A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELERAEALITETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L +RG+ G+D  SF 
Sbjct: 361 RTLERGLSILDAETRDLSAGQKLSGETAFTLYDTYGFPLDLTQDALKSRGI-GVDTESFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   TE +WFSL+E+ GAT+F+GY+                  
Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWFSLRERVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  VE   +G++  +V  QTPFY E+GGQ+GDTG     G+
Sbjct: 462 -----AETAEGVVTALVKGGAEVEAIGAGEEGLLVVSQTPFYGESGGQVGDTGTVTAPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD +KK   +FVHH +VE G L T  ++ L +D++ R  +  +HSATHLLH AL  
Sbjct: 517 RVRVTDTEKKLGDLFVHHVMVEEGRLATGQAIELQVDHERRAAIRAHHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP+   E+ ++ED  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEDMANRVLLQNGPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE---DG--GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA+GA AL G KY D VRVVS+  E   DG     S  LCGGTHV+ TGEI ++ +V ES
Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEESSADGRPKAFSVELCGGTHVARTGEIGVITVVGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ +G+RRIEA+TG  AR HL  +  +L ++A  LKV       R+  + E+ R+L  +L
Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAMAGLLKVPPAEAPERLAALIEDRRRLEREL 756

Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+RKL +   +  +    ++  V  M+  +  V+ ++LKS+ D  +K++ SGI+ +VG
Sbjct: 757 AEARRKLAMGGGSAGEDPVREVGGVKLMARAVQGVEMRDLKSLADEGKKRLGSGIVAIVG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           ++++ KA +++ VT+DL DRF+AV L R  ++ LGG GGGGR  MAQ+GGP+G
Sbjct: 817 VAQDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPDG 869


>gi|323137975|ref|ZP_08073049.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322396694|gb|EFX99221.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 889

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/908 (49%), Positives = 604/908 (66%), Gaps = 35/908 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNQIRSAFLDYFVRNGHEKVASSPLVPHNDPTLMFTNAGMVQFKNVFTGVEKRHQAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEGAIELAWGLITKEFSL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +D+EAF LWKKI+G    +IIRI ++DNFWSM +TGPCGPCSEIF+DQG
Sbjct: 121 PVEKLLVTVYHDDDEAFDLWKKIAGFHDSRIIRIASSDNFWSMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQ+EQ    +R  LP+ SIDTGMGLER+A ++Q 
Sbjct: 181 ETLTGGPPGSPGEDGDRFLEFWNLVFMQYEQVAPGQRAPLPRPSIDTGMGLERIAALMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NY+IDLF+ L  A  + TG    G    +HRVI DHLR+SSFL+ADG+ P+NEGRGY
Sbjct: 241 VTSNYEIDLFRSLTGAVAEYTGAPVGGPQGASHRVIADHLRASSFLVADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A++LG  EPLM  L+P L  EMG AYPEL++A+ LI +TL++E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQILGAQEPLMWRLVPTLVAEMGQAYPELVRAQALIVDTLKTEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +LD   ++LG+ + L+G+ AFKLYDT+G PLD+ +D L  RG+ G+D  +FN
Sbjct: 361 ATLARGLAILDDETANLGRGDKLSGETAFKLYDTYGFPLDLTEDALRPRGV-GVDKEAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF+LKE+ G T+F+GY+                  
Sbjct: 420 AAMERQRAEARKAWAGSGETATETLWFALKERLGTTEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     +V AIV  G        G +  V+ +QTPFY E+GGQ+GD G   G  +
Sbjct: 462 -----TEKSEGVVSAIVHDGAEAFVLKQGARGAVILNQTPFYGESGGQVGDVGVMRGRNV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ + QKK   + VH  +VE G +   + L L +D++ RR    NHSATH+LH AL  
Sbjct: 517 RFRVENTQKKLGDLIVHEGVVEEGEIVPGVVLELDVDHERRRATRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD TH KP+T  EL  +E   N+I+  N PV TR+M ++DA
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDFTHPKPLTEEELARVEALANEIVQDNAPVDTRLMAQDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I SGA AL G KY D VRVVS+   D GV    S  LCGGTHVS TG+I L+ IV E ++
Sbjct: 637 IRSGARALFGEKYGDEVRVVSMGRPDPGVAHPFSVELCGGTHVSRTGDIGLISIVGEGAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA T + ARS L+ Q   L+ +AS ++        R+ ++ EE ++L+  L  
Sbjct: 697 ASGVRRIEARTAEGARSQLVAQSRALREIASLIRAPMEEAPARLGQLLEERKRLERDLAD 756

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+RKL +              +A V  ++  +  VD+K+LKS++D  +K I SG++    
Sbjct: 757 ARRKLAMGGGSGNGGGQEWRDVAGVKLLTRAVDGVDAKDLKSLVDDAKKNIGSGVVAFAC 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S + KA +++ VT+DL  +F+AV+  R+++  LGG GGGGRP +AQ+GGPN    +QA+
Sbjct: 817 ASPDGKAGIVVGVTDDLTSKFSAVEFVRVASATLGGKGGGGRPDLAQAGGPNAAAIEQAL 876

Query: 890 AGVASFLK 897
           A V   L+
Sbjct: 877 ASVEDALR 884


>gi|170751975|ref|YP_001758235.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|205830144|sp|B1M0N0|SYA_METRJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170658497|gb|ACB27552.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 892

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/914 (50%), Positives = 603/914 (65%), Gaps = 40/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K GHE++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFAKAGHEVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGMEKRAYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +D+EA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 KPDKLLVTVYADDDEAAGLWKKIAGFSDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PALQGGPPGSPDEDGDRFLEFWNLVFMQYEQLEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E   + ++RVI DHLR+SSFL+ADG+LP NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATMASYRVIADHLRASSFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  EP M  L+P L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAEILGAREPTMFRLVPTLVREMGQAYPELMRAESLIAETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L + + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F 
Sbjct: 361 RTLERGLSILDAESRDLREGDKLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTDAFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  AR    G G   TE +WF L+E+ GAT+F+GY+                  
Sbjct: 420 AAMQRQKQAAREAWKGSGEAATETVWFGLRERVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     IV A+++ G  V    +GQ   V+ +QTPFY E+GGQ+GDTG  +  G+
Sbjct: 462 -----TENAEGIVTALLRDGAEVTTLAAGQTGLVLVNQTPFYGESGGQVGDTGLILAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD QKK   +FVHH  VE G L  +  + L +D   R+ +  NHSATHLLH AL  
Sbjct: 517 RARVTDTQKKLGDVFVHHVTVEEGTLSLDQPVELKVDNVRRKAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD++H KPI + EL  +ED  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDISHPKPIEADELARVEDIANAVLLQNAPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-DGGV-------HSSALCGGTHVSSTGEIMLLYIV 711
           IASGA AL G KY D VRVVS+    DG          S  LCGGTH + TG+I  + IV
Sbjct: 637 IASGARALFGEKYGDEVRVVSMGLPVDGEAAQPRARNFSVELCGGTHAARTGDIGAITIV 696

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           +ES++ AG+RRIEA+T   AR H   +   L +LA  LK        R+  + E+ R+L 
Sbjct: 697 AESAVGAGVRRIEALTADAARRHRAEEARTLAALAGILKAPVSEAPDRLTALMEDRRRLE 756

Query: 771 -QLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +L   +RKL +  E          +I  V F   +I  +D ++LK ++D  +K++ SGI
Sbjct: 757 RELAETRRKLAMGGEGGPGSGAQQTEIGGVAFRRSVIEGLDMRDLKPIVDEEKKRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +VGI  + KA +++ VT+DL  R++AV L R  A  LGG GGGGR  MAQ+GGPNG  
Sbjct: 817 VAVVGIGPDGKAGLVVGVTDDLTARYDAVGLVRAGAGALGGKGGGGRRDMAQAGGPNGAG 876

Query: 885 ADQAIAGVASFLKK 898
           A+ A+  VA  L +
Sbjct: 877 AEAALDAVAQALTE 890


>gi|115523616|ref|YP_780527.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115517563|gb|ABJ05547.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 893

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 3   MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L
Sbjct: 63  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 123 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 182

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 183 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A   +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 243 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 303 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG++ +DI SF 
Sbjct: 363 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGIS-VDIASFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA   G G    E +WF L+EK GAT+F+GY+                  
Sbjct: 422 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + V A+V+ G++V++  +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 464 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 519 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 578

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 579 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 638

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV +     D G +    S  LCGGTHV  TG+I L+ +  E
Sbjct: 639 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 698

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ +G+RRIEA+TG++AR          K  A+ L+ S  ++  R+  + +E +KL  +
Sbjct: 699 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 758

Query: 772 LIHAKRKLQLNVEDL--------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L  A++KL +                ++  V  M+  +  V+ K+LKS++D  +K++ SG
Sbjct: 759 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 818

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I L+  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 819 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 878

Query: 884 K 884
           K
Sbjct: 879 K 879


>gi|205830250|sp|Q07R87|SYA_RHOP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 891

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L
Sbjct: 61  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A   +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG++ +DI SF 
Sbjct: 361 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA   G G    E +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + V A+V+ G++V++  +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV +     D G +    S  LCGGTHV  TG+I L+ +  E
Sbjct: 637 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S++ +G+RRIEA+TG++AR          K  A+ L+ S  ++  R+  + +E +KL  +
Sbjct: 697 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 756

Query: 772 LIHAKRKLQLNVEDL--------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L  A++KL +                ++  V  M+  +  V+ K+LKS++D  +K++ SG
Sbjct: 757 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I L+  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|300023633|ref|YP_003756244.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525454|gb|ADJ23923.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 897

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/919 (50%), Positives = 631/919 (68%), Gaps = 47/919 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ VS+IR++FL++F KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTGQE      
Sbjct: 1   MAGVSAIRSSFLDYFAKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGQETRAIPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+LLTK+F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLLTKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +T+Y  D++A+K+WKK++G S D+IIRI ++DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 DAKRLLVTIYHTDDDAYKIWKKVTGFSDDRIIRIASSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS + EG+R+IEIWNLVFMQFEQ+   +R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDSEGDRFIEIWNLVFMQFEQRAPGDRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQ---VTGMKYEGNNI------VNHRVIVDHLRSSSFLIADGI 290
           K +NY+IDLF++LIQ+  Q    TG K  G +       V  RVI DHLRS+SFLIADG+
Sbjct: 241 KHDNYEIDLFENLIQSIRQEAAKTGAKETGGDASPEFLNVARRVIADHLRSTSFLIADGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRIMRRAM YA  +G  +PLM  L+P+L  EMG AYPEL++A+ LI ET
Sbjct: 301 LPSNEGRGYVLRRIMRRAMRYAHQMGCHDPLMHLLVPSLVREMGDAYPELVRAQPLITET 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ +F +TLD GL LL    + + K  +  GDVAFKLYDT G PLD+ +D L  RG+
Sbjct: 361 LKLEETKFKRTLDNGLKLLGESSASIKKGAVFPGDVAFKLYDTFGFPLDLTEDALKPRGI 420

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D  +F+ A+++Q+  A+A   G G   TE +WF +K+K GA++F+GYD         
Sbjct: 421 S-VDTNAFDAAMKKQKDAAKAAWKGSGEAATEGLWFEIKDKVGASEFLGYD--------- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         T     IV A+V  G+  +   +G +  ++ +QTPFY E+GGQ+GD
Sbjct: 471 --------------TETAEGIVAALVANGKDADTLKAGDEGALILNQTPFYGESGGQVGD 516

Query: 531 TGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G   G  G   ++TD QKK   +FVH   VE G      ++ + +D+  R     NHSA
Sbjct: 517 QGVIKGAKGALFRVTDTQKKLGDLFVHFGKVEAGSFTAGDAVEIEVDHARRTATRANHSA 576

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG+HV+Q GS ++PD LRFD +H+KP+++ E+K++ED  N ++ +N PV
Sbjct: 577 THLLHEALRQVLGTHVAQKGSLVSPDRLRFDFSHTKPMSAEEIKAVEDMANAVLLENTPV 636

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGGTHVSSTGEIM 706
           VTR+M  ++A ASGA AL G KY D VRVVS+     G +   S  LCGGTHV+ TG+I 
Sbjct: 637 VTRLMALDEARASGAMALFGEKYGDEVRVVSMGSTRPGANKAWSVELCGGTHVTRTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V+ES   AG+RRIEA+TG+ AR++L  QD +++  AS LK    +++ R++ + EE
Sbjct: 697 LVRVVAESGSAAGVRRIEALTGEGARAYLDEQDARVREAASVLKTRPEDLIERLKHLVEE 756

Query: 767 YRKL--QLIHAKRKLQL--NVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            + L  QL  AKRKL L   V   S        I +V  ++  +  ++ K+L+ ++D  +
Sbjct: 757 RKVLEKQLADAKRKLALGGGVNGASDGADAIRSIGNVKLLARTVQGLNPKDLRGLIDDGK 816

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K++ SGI+ +VG++++ KA + + VTEDL+  ++AVDL +  A+ LGG GGGGRP MAQ+
Sbjct: 817 KQVGSGIVAIVGVTEDGKAGLAVGVTEDLVKSWSAVDLVKAGAEALGGKGGGGRPDMAQA 876

Query: 878 GGPNGNKADQAIAGVASFL 896
           GGP+G KA  A+  + + L
Sbjct: 877 GGPDGAKAGDALKAIEARL 895


>gi|170743900|ref|YP_001772555.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|205830146|sp|B0UGC4|SYA_METS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168198174|gb|ACA20121.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 886

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/893 (50%), Positives = 607/893 (67%), Gaps = 35/893 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFAKHGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW+L+TKEF L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY +D++A  LW+KI+G   ++IIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 DRSKLLVTVYADDDDAATLWRKIAGFPEERIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS EE G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PELWGGPPGSPEEDGDRFLEFWNLVFMQYEQIEPGNRVGLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A     G   EG    ++RVI DHLR++SFL+ADG+LP NEGRGY
Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRPPEGAQTASYRVIADHLRAASFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +P+M  L+P L  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELVRAESLISETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L + + L+G+ AF LYDT+G PLD+ QD L +RG+ G+D  +F 
Sbjct: 361 RTLERGLSILDAETRDLSEGQNLSGETAFTLYDTYGFPLDLTQDALKSRGI-GVDTDAFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   TE +W++L+E+ GAT+F+GY+                  
Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWYALRERVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  VE   SG++  +V  QTPFY E+GGQ+GDTG     G+
Sbjct: 462 -----AETAEGVVTALVRGGVEVEALASGEEGLLVVSQTPFYGESGGQVGDTGTVAAAGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD +KK   +FVHH  VE G L    ++ L +D+  R  +  +HSATHLLH AL  
Sbjct: 517 RARVTDTEKKLGDLFVHHVAVEEGRLTVGQAVELRVDHARRAAIRAHHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP+   E+ ++E+  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEEMANRVLLQNGPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA+GA AL G KY D VRVVS+  + GG       S  LCGGTHV  TGEI L+ +V E 
Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEDQGGDGRRRTFSVELCGGTHVGRTGEIGLITVVGEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ +G+RRIEA+TG  AR HL  +  +L ++A  LKV       R+  + E+ R+L  +L
Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAVAGLLKVPPAEAADRLAALIEDRRRLEREL 756

Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+RKL +      +    ++A V  M+  +  V+ ++LKS+ D  +K++ SG++ +VG
Sbjct: 757 SEARRKLAMGGGGAGEEPVREVAGVKLMARSVEGVEMRDLKSLADEGKKRLGSGVVAIVG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           ++ + KA +++ VT+DL DRF+AV L R  ++ LGG GGGGR  MAQ+GGP+G
Sbjct: 817 VAPDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPDG 869


>gi|16126768|ref|NP_421332.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221235548|ref|YP_002517985.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|20532261|sp|Q9A5C1|SYA_CAUCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13424088|gb|AAK24500.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220964721|gb|ACL96077.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 880

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/904 (50%), Positives = 595/904 (65%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F K  H + PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLDYFGKADHAVTPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT EF L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILHAWTLLTAEFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  LWKKI+GL  D+IIRI T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDEAADLWKKIAGLGDDRIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS +E G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGERISLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLFK LI AS ++TG+K EG    +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 QHDNYDIDLFKALIAASVELTGVKAEGAQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L P L  EMG AYPEL +A+ LI ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGASEPLMHRLAPTLVREMGQAYPELRRAEALIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   ++L    +L+G+ AFKLYDT+G PLD+ QD + A+GL  +D  +F+
Sbjct: 361 TTLGRGMGLLDEATANLAAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR  ARA+  G G       WFS+KEK GAT F+GY+                  
Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFSIKEKAGATDFVGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T   + +VKAIV  G  VE A +GQ VEV+ D+T FYAE+GGQ GDTG     G 
Sbjct: 462 -----TTETTGVVKAIVVDGAEVESASAGQTVEVLLDRTSFYAESGGQAGDTGVIEAHGR 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +    L+    +V ++D   R     NHSA HL+H AL  
Sbjct: 517 ESRVLDTQKQAGELHVHRVELASD-LKVGDQVVASVDADRRNTTRSNHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T+ EL  IE  VN++I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTAEELDRIEAEVNEVIRQNVPAETKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     ++   +S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLADEAKAYSVELCGGTHVARTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR  L+ Q    K+LA   K     V  RV+ +  + ++L+   A+
Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVATRVDALIADRKRLEKELAE 755

Query: 777 RKLQLNVEDLSCHKIA-DVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K QL +          DVN    ++ ++  V  KEL+ V +  +K++ SG++ LVG S 
Sbjct: 756 AKKQLALGGGGAASGPEDVNGTALIARVLDGVGGKELRGVAEEFKKQLASGVVALVGTS- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+ +KA++ +A V
Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKAEEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KALL 878


>gi|158424478|ref|YP_001525770.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|205829980|sp|A8ICW8|SYA_AZOC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158331367|dbj|BAF88852.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 881

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/890 (50%), Positives = 602/890 (67%), Gaps = 33/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++F+++F KNGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSSFIDYFVKNGHEAVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+DL
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEWDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+ A+ LWKK++GL   +IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLATVYYDDDVAYDLWKKVAGLPDSRIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQYEQL-PGERLNLPRPSIDTGMGLERISALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DL + +I   +++T +   G    +HRVI DHLRSS FL+ADG+LP+NEGRGY
Sbjct: 240 THDNYETDLMRAIIAEVQELTNVPSNGPQKASHRVIADHLRSSVFLVADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+P L  EMG AYPE+++A+ L  ETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAQLLGAREPLMHRLVPVLVREMGRAYPEIVRAEALATETLLLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+   + L       G+VAFKLYDT+G PLD+ +D L  RG+  ++  +F+
Sbjct: 360 RTLERGLSLLEEESAGLVSGARFPGEVAFKLYDTYGFPLDLTEDALRGRGIE-VEREAFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   T+ +WF ++E+ GAT+F+GYD                  
Sbjct: 419 AAMERQKAEARANWSGSGEAATDTVWFGVREREGATEFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V+A+VQ+G+ V E  +G +  VV +QTPFY E+GGQ+GD+G   G+G+
Sbjct: 461 -----TETAEGAVRALVQEGKEVSELPAGARGFVVLNQTPFYGESGGQVGDSGLVSGEGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  + + QKK   +FVH   V  G L+    L L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 KACVLNTQKKLGDVFVHDVEVTEGTLKIGTPLALEVDHARRSAVRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + PD LRFD +H KP+T+ EL  +ED  N  + +N PV TR+M  +DA
Sbjct: 576 VLGDHVAQKGSLVAPDRLRFDFSHPKPLTADELAQVEDIANTYVLRNEPVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +ASGA AL G KY D VRVVS+  +  +G   S  LCGGTHV  TG+I ++ ++++S + 
Sbjct: 636 VASGARALFGEKYGDEVRVVSMGTDSGNGAPFSVELCGGTHVKRTGDIGIVTVLADSGVA 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775
           AG+RR+EA+T   AR HL      L++ A  LKVS   V  RV  + EE RKL+  L  A
Sbjct: 696 AGVRRLEALTATAARRHLNAASTALQTTAGTLKVSTAEVEARVAALVEERRKLERDLAEA 755

Query: 776 KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           ++KL +     S   + +VN   ++   IS  D K+LK+++D  + KI SG++ +   + 
Sbjct: 756 RKKLAMGGGGESGPAVIEVNGTRYLRIAISGADPKDLKAIVDEGKTKIGSGVVAVANTAA 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + K ++++ VT DL  +F+A  L R+  +VLGG GGGGRP MAQ GGP+G
Sbjct: 816 DGKGALVVGVTADLAGKFDAQKLVRIGVEVLGGKGGGGRPDMAQGGGPDG 865


>gi|154253021|ref|YP_001413845.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|154156971|gb|ABS64188.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 913

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/907 (49%), Positives = 607/907 (66%), Gaps = 37/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ +LEFF+  GHE++ S  L+P NDPTL+FTN+GMVPFKN+FTGQE   Y+ 
Sbjct: 22  MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K  AI+ AWDL+TKE  L
Sbjct: 82  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +T+Y++D+EA  LWKKI+GLS DKI+R+    NFW M +TGPCGP SEIF+D G
Sbjct: 142 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 201

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQ+EQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 202 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI AS + +    +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY
Sbjct: 262 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+L+G  EPLM  L+PAL  +MG AYPEL +A+ L+ ETLR E+ RF 
Sbjct: 322 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD  +  LG   +L G+VAFKLYDT+G PLD+ QD L +RG++ +D   F+
Sbjct: 382 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR  ARA   G G   TE +WF L++K GAT+F+GY+                  
Sbjct: 441 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 482

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                +      V A++  G+ V++  +G    ++ +QTPFYAE+GGQ+GDTG     DG
Sbjct: 483 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 537

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D  KK   + VH   + RG L+    + + +D   R     NHSATHLLH AL 
Sbjct: 538 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 597

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + P+ LRFD +H KP+T  E+  +E  VN +I QN  V TR+M  ED
Sbjct: 598 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 657

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AIA+GA AL G KY + VRV+++  +D    G +S  LCGGTHV   G+I +  IVSES+
Sbjct: 658 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 717

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + +GIRRIEA+TG+ AR++L+ QD   K  AS L++S  ++  RV  + EE ++L  +L 
Sbjct: 718 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 777

Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            AK++L +        ++    +   V  ++  +  V+ K+L+ ++D  +K++ SG+++L
Sbjct: 778 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 837

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V IS++ K ++ + VT+DL  R+NAV+L +  A  +GG GGGGRP MAQ+GGP   KAD 
Sbjct: 838 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 897

Query: 888 AIAGVAS 894
           A+  V +
Sbjct: 898 ALDAVKA 904


>gi|205830263|sp|A7HWA5|SYA_PARL1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/907 (49%), Positives = 607/907 (66%), Gaps = 37/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ +LEFF+  GHE++ S  L+P NDPTL+FTN+GMVPFKN+FTGQE   Y+ 
Sbjct: 1   MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K  AI+ AWDL+TKE  L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +T+Y++D+EA  LWKKI+GLS DKI+R+    NFW M +TGPCGP SEIF+D G
Sbjct: 121 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQ+EQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI AS + +    +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY
Sbjct: 241 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+L+G  EPLM  L+PAL  +MG AYPEL +A+ L+ ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD  +  LG   +L G+VAFKLYDT+G PLD+ QD L +RG++ +D   F+
Sbjct: 361 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR  ARA   G G   TE +WF L++K GAT+F+GY+                  
Sbjct: 420 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                +      V A++  G+ V++  +G    ++ +QTPFYAE+GGQ+GDTG     DG
Sbjct: 462 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D  KK   + VH   + RG L+    + + +D   R     NHSATHLLH AL 
Sbjct: 517 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + P+ LRFD +H KP+T  E+  +E  VN +I QN  V TR+M  ED
Sbjct: 577 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AIA+GA AL G KY + VRV+++  +D    G +S  LCGGTHV   G+I +  IVSES+
Sbjct: 637 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + +GIRRIEA+TG+ AR++L+ QD   K  AS L++S  ++  RV  + EE ++L  +L 
Sbjct: 697 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 756

Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            AK++L +        ++    +   V  ++  +  V+ K+L+ ++D  +K++ SG+++L
Sbjct: 757 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V IS++ K ++ + VT+DL  R+NAV+L +  A  +GG GGGGRP MAQ+GGP   KAD 
Sbjct: 817 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 876

Query: 888 AIAGVAS 894
           A+  V +
Sbjct: 877 ALDAVKA 883


>gi|312115730|ref|YP_004013326.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220859|gb|ADP72227.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 894

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/911 (50%), Positives = 624/911 (68%), Gaps = 39/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS ++ IR TF++FF+KNGHE +PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MSTLNEIRGTFIDFFRKNGHEHVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGMETLPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKE+ L
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLVTKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D++RL +TV+ ED++A  LWKKI+GL  D+IIRI T+DNFWSM ETGPCGPCSEIFFD G
Sbjct: 121 DKKRLLVTVFSEDDDAHALWKKIAGLPDDRIIRIPTSDNFWSMGETGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS + +G+R+IEIWNLVFMQ+EQ +K ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PKVPGGPPGSEDADGDRFIEIWNLVFMQYEQVSKTERLDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD DLF+ LI+AS   TG+  EG  + +HRVI DHLR+S+FLIADG+LP+NEGRGY
Sbjct: 241 VHNNYDTDLFQALIRASVDATGVPAEGAALPSHRVIADHLRASAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM ++ LLG  EPL+  LLP L  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHSHLLGAEEPLLYRLLPVLVREMGQAYPELVRGQALIGETLKIEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD     LG  +  +GDVAFKLYDT+G PLD+ QD L AR ++ +DI  FN
Sbjct: 361 RTLARGLSLLDDASGSLGAGDTFSGDVAFKLYDTYGFPLDLTQDALKARSIS-VDIKQFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ AR    G G   T+K+WF + ++ GAT+F+GY+                  
Sbjct: 420 AAMAQQKAEARKAWAGSGEAATDKVWFDVLDQAGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                T      + AIV+ G+ V++  +G++  ++ +QTPFY E+GGQ+GD G  I    
Sbjct: 462 -----TEAAEGQIVAIVKDGKPVKQLKTGEEGILILNQTPFYGESGGQVGDRGVIIAPKS 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +++ QKK   +F H   V++G L+   ++ + +D+  R  +  NHSATHLLH AL 
Sbjct: 517 AHFDVSETQKKLGKLFAHVGTVKKGPLKVGDAVEMQVDHARRTAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H KP++  EL ++E+  N ++ ++ PVVTR+M  +D
Sbjct: 577 ETLGTHVTQKGSLVDPDKLRFDFSHPKPLSKEELAAVEELANAVVLRDSPVVTRLMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSV---EYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+A+GA AL G KY + VRVVS+    +++ G    S  LCGGTHV +TGEI L+ +V E
Sbjct: 637 AVAAGAMALFGEKYGEEVRVVSMGEANHDERGSRAFSVELCGGTHVRATGEIGLVKVVQE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           +++ AG+RRIEA+T   AR HL  Q+  L+  A  L+V+   V  R++ + +E +KL  +
Sbjct: 697 TAVAAGVRRIEALTANAARLHLSHQEAALRQAAELLRVAPSEVPARLQNLIDERKKLERE 756

Query: 772 LIHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L  AK+K+ L         +    ++ DV   +  +  +  K+L+S++D  +++I SGI+
Sbjct: 757 LADAKKKIALGTGGDQAGAENPVRQVGDVTMFARTVQGIQPKDLRSLVDDGKRQIGSGIV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            +VG++ + KA +++ VT DL   ++AVDL +  A  +GG GGGGRP +AQ+GGPNG  A
Sbjct: 817 AIVGVTDDGKAGIVVGVTGDLTKHYSAVDLVKAGAAAVGGQGGGGRPDLAQAGGPNGANA 876

Query: 886 DQAIAGVASFL 896
           + A+  +A  L
Sbjct: 877 EAALNAIAECL 887


>gi|295688603|ref|YP_003592296.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295430506|gb|ADG09678.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 880

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/904 (50%), Positives = 593/904 (65%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F K  H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLDYFGKADHAVVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT EF L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLLTGEFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PKEKLLVTVYHTDDEAADLWKKIAGLSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQFEQ    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGDRVSLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI AS ++TG+K EG+   +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKALIAASVELTGVKAEGDQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  EMG AYPEL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGAQEPLMHRLAPTLVAEMGQAYPELRRAEASIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   ++L    +L+G+ AFKLYDT+G PLD+ QD + A+GL  +D   F+
Sbjct: 361 TTLGRGMGLLDEATANLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR  ARA+  G G       WF++KEK GAT F+GY+                  
Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFAIKEKNGATDFVGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T   + +V+AIV  G  V+ A  G  VEV+ D+T FYAE+GGQ GD G    +G 
Sbjct: 462 -----TTETTGVVQAIVVDGAEVQSATGGTTVEVLLDRTSFYAESGGQAGDQGALEANGR 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +  G L+    +V+++D   R+    NHSA HL+H AL  
Sbjct: 517 ENRVIDTQKQAGELHVHRVELS-GELKVGDKVVVSVDADRRQTTRSNHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T  EL  IE  VN +I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTPEELDKIEAEVNAVIRQNVPAETKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     ++   +S  LCGGTHVS TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLTDESKAYSVELCGGTHVSRTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR  L+ Q    KSLA   K     V  RV+ +  + ++L+   A+
Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKSLADQFKTPVAEVAQRVDALIADRKRLEKELAE 755

Query: 777 RKLQLNVEDLSCHKIA-DVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K QL +          DVN    ++ ++  V  KEL+ V +  +K++ SG++ LVG S 
Sbjct: 756 AKKQLALGGGGAASGPEDVNGVALIARVLDGVGGKELRGVAEEFKKQLTSGVVALVGTS- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+ +KAD+ +A V
Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKADEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KAAL 878


>gi|167645359|ref|YP_001683022.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
 gi|205830018|sp|B0SZN4|SYA_CAUSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167347789|gb|ABZ70524.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 883

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/907 (49%), Positives = 591/907 (65%), Gaps = 37/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F    H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLNYFGAADHAIVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPPHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT++F L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D EA  LWKKI+GLS D+IIRI TNDNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDTEAADLWKKIAGLSDDRIIRIATNDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A V+Q 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQMAGGERVSLPKPSIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI AS ++TG++ EG    +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIAASVELTGVRAEGAQAPSHRVIADHLRSSSFLLADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  +MG AYPEL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMHRLAPTLVAQMGQAYPELRRAEASIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   + L    +L+G+ AFKLYDT+G PLD+ QD + ARG+  +D   F+
Sbjct: 361 VTLGRGMGLLDEATAGLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRARGIT-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA+  G G       WF +KE+ G T F+GYD                  
Sbjct: 420 VAMDRQRTMARANWAGSGQTGAAAAWFGIKEQSGPTNFVGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T   +  VKAIV  G  VE A +G  V+V+ D+T FYAE+GGQ GDTG     G+
Sbjct: 462 -----TTETTGTVKAIVLDGAPVEAAQAGASVDVLLDRTSFYAESGGQAGDTGVIEAHGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QK+A  ++VH   +  G L+   S+V ++D   R     NHSA HL+H AL  
Sbjct: 517 ESRVTDTQKQAGDLYVHRVELA-GPLKVGDSVVASVDAARRTTTRANHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  D +RFD +H  P+T+ E++ IE  VN +I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGDRMRFDFSHGGPLTADEIERIEAEVNAVIRQNVPAQTKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     E G  +S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGESLTETGKAYSVELCGGTHVARTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEA+TG+ AR  L+ Q    K+LA   K     V+ RV+ +  E + L  QL  
Sbjct: 696 ASGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVLARVDALVAERKALERQLAE 755

Query: 775 AKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829
           AK++L L             +A    ++ ++  V  KEL+ V +  +K++ + G++ LVG
Sbjct: 756 AKKQLALGGGSGGAASGPEDVAGTALIARVLDGVGGKELRGVAEEFKKQLTNGGVVALVG 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+  KA   +
Sbjct: 816 VT-DGKAAVTVAVTADLTAKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDATKAQAGL 874

Query: 890 AGVASFL 896
             + + L
Sbjct: 875 DAIKAAL 881


>gi|188581873|ref|YP_001925318.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|205830142|sp|B1ZC90|SYA_METPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|179345371|gb|ACB80783.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 891

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/899 (50%), Positives = 596/899 (66%), Gaps = 40/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA  LWKKI+G   DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PALAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E     ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL++++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGRAFPELVRSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDAESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTQAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  ARA   G G   TE +WF +KE+ GAT+F+GY+                  
Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++V A++++G  VE   +G    VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TETAEAVVGALLREGGEVETLKAGDSGIVVVNQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T+ +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTNTEKKLGDLFVHHVTVEEGTLSLGAAVELKVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELTRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+    +D G          S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGWEVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VIGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L  A++K+ +        +  +VN    M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREVNGVRLMARVVEGVEMRDLKGLADEGKSRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           + +VG+S + KA +++ VTEDL  R++AV L R  A  LGG GGGGR  MAQ+GGP+G+
Sbjct: 817 VAIVGVSADGKAGLVVGVTEDLTGRYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGPDGH 875


>gi|315499502|ref|YP_004088305.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315417514|gb|ADU14154.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 880

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/894 (50%), Positives = 592/894 (66%), Gaps = 33/894 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR TFL++F KN HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNQIRQTFLDYFAKNDHEIVSSSSLVPHNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+L+TKE+ L
Sbjct: 61  ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAISHAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+EAF LWKKI+G S D+IIRI  +DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PKDRLLATVYIDDDEAFNLWKKIAGFSDDRIIRIAGSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS EE G+R++EIWNLVFMQF+QQ    R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQFDQQTDGTRLNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI+AS + TG+K EG  + +HRVI DHLRS+SFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKALIRASVEETGVKAEGEALPSHRVIADHLRSTSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  EMG  Y EL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMPRLAPVLVREMGDHYGELKRAEATIIETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LLD   ++L   ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++  F 
Sbjct: 361 RTLGRGMTLLDEATANLKDGDMLEGEVAFKLYDTYGFPLDLTQDAIRAKGLS-VNVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ R RA+  G G  + +  WFS++++ GA++F+GY+ L                
Sbjct: 420 AAMGEQKQRGRANWKGSGETSVQAEWFSIRDQAGASEFVGYEHLS--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S  + IV+ GE V E + G++++VVFD+T FY E GGQ GDTG     G 
Sbjct: 465 --------TQSHARVIVRDGESVSEGLVGERLQVVFDRTVFYPEGGGQAGDTGTLHWAGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +  G+L     + L +D   R+    NHSA HLLH AL  
Sbjct: 517 EGRVLDTQKQAGDLIVHDVEITEGVLAVGDMVHLHVDGAKRQTTKSNHSAAHLLHAALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P++  E++ IE  VN +I QN    T++M   +A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGAPVSPEEIERIEAEVNAVILQNEAATTKMMAPAEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+S+ +   G    +S  LCGGTHVS TG+I L  I+SES I
Sbjct: 637 IEAGAVALFGEKYGDEVRVLSLGHALDGADKGYSVELCGGTHVSRTGDIALFKIISESGI 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEA TG+ AR +L+ Q    +SLA   KV    V  RVE +  + ++L  +L  
Sbjct: 697 AAGVRRIEAFTGEAARQYLLEQAGVARSLADQFKVPVAQVSARVEALVNDRKRLEKELAD 756

Query: 775 AKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           AKR L +     +     I  V  ++ ++  V  K+L+ + +  +K++ SG++ LVG+  
Sbjct: 757 AKRALAVGGGGKASGPEDINGVKVIARVLDGVGGKDLRPLAEDFKKQVGSGVVALVGV-L 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           + KA+V + VT DL  RFNA +LA+ +   +GG G GG+P  AQ G P+  KA+
Sbjct: 816 DGKAAVTVAVTPDLTGRFNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDATKAE 869


>gi|254561741|ref|YP_003068836.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254269019|emb|CAX24980.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 891

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/896 (50%), Positives = 592/896 (66%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEASTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+    +D G          S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L  A++K+ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|163852018|ref|YP_001640061.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|205830139|sp|A9W5Y4|SYA_METEP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163663623|gb|ABY30990.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 891

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/896 (50%), Positives = 592/896 (66%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+    +D G          S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L  A++K+ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL  R++AV+L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTGRYDAVELVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|240139285|ref|YP_002963760.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240009257|gb|ACS40483.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 891

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/896 (50%), Positives = 591/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    ++V A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVVGALLRDGSEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T   KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTDKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+    +D G          S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L  A++K+ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|218530772|ref|YP_002421588.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218523075|gb|ACK83660.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 891

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/896 (50%), Positives = 591/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYLK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  +T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KAGVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRSNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+    +D G          S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L  A++K+ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|205830103|sp|Q0BSD5|SYA_GRABC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/887 (50%), Positives = 594/887 (66%), Gaps = 32/887 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+  Y  
Sbjct: 1   MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              +L +TVY +D++A +LWK I+GL  ++IIRI ++DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+E+     R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G +  +HRV+ DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG+AY EL+QA+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL +L   +  LG+ + L+GDVAFKLYDT+G PLD+ QD L  +G A +D+  F+
Sbjct: 361 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGRA-VDVAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA   G G    E +WF ++++ G T+F+GY                   
Sbjct: 420 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGYS------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                T    + + A+V  G + E A +G +V VV +QTPFY E+GGQ+GDTG   G +G
Sbjct: 462 -----TEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ I+D QKK   +FVH   VE G+ +    + + +D+Q R  +  +HSATHLLH AL 
Sbjct: 517 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   PIT  +L  +E  VN +I QN PV TR+M  E 
Sbjct: 577 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 636

Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A+A GA AL G KY D VRVVS+    E+G   +S  LCGGTHV  TG+I L  I  ES+
Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+TG+ A + +   + +L+  AS L+V+ G+V  RV  + EE +KL  QL 
Sbjct: 697 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 756

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A+RKL          ++  V   +  + +V  KELK + +A+ ++++SG++ LV  + E
Sbjct: 757 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVS-TAE 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            KASV++ VT DL  RF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 816 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 862


>gi|114328034|ref|YP_745190.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|114316208|gb|ABI62268.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 945

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/887 (50%), Positives = 594/887 (66%), Gaps = 32/887 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+  Y  
Sbjct: 66  MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 125

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++T+EF L
Sbjct: 126 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 185

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              +L +TVY +D++A +LWK I+GL  ++IIRI ++DNFW M +TGPCGPCSEIF+D  
Sbjct: 186 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 245

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+E+     R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 246 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 305

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G +  +HRV+ DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 306 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 365

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG+AY EL+QA+ LI ETLR E+ RF 
Sbjct: 366 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 425

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL +L   +  LG+ + L+GDVAFKLYDT+G PLD+ QD L  +G A +D+  F+
Sbjct: 426 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGRA-VDVAGFD 484

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA   G G    E +WF ++++ G T+F+GY                   
Sbjct: 485 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGYS------------------ 526

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                T    + + A+V  G + E A +G +V VV +QTPFY E+GGQ+GDTG   G +G
Sbjct: 527 -----TEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 581

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ I+D QKK   +FVH   VE G+ +    + + +D+Q R  +  +HSATHLLH AL 
Sbjct: 582 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 641

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   PIT  +L  +E  VN +I QN PV TR+M  E 
Sbjct: 642 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 701

Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A+A GA AL G KY D VRVVS+    E+G   +S  LCGGTHV  TG+I L  I  ES+
Sbjct: 702 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 761

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+TG+ A + +   + +L+  AS L+V+ G+V  RV  + EE +KL  QL 
Sbjct: 762 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 821

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A+RKL          ++  V   +  + +V  KELK + +A+ ++++SG++ LV  + E
Sbjct: 822 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVS-TAE 880

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            KASV++ VT DL  RF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 881 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 927


>gi|296448225|ref|ZP_06890121.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296254265|gb|EFH01396.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 897

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/900 (49%), Positives = 591/900 (65%), Gaps = 43/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IRTTFL+FF +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNQIRTTFLDFFSRNGHEKVASSPLVPLNDPTLMFTNAGMVQFKNVFTGFEKRHYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKC+RAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+++E  L
Sbjct: 61  ATSAQKCMRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEGAIELAWTLVSRELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G S D+IIRI ++DNFWSM + GPCGPCSEIF+DQG
Sbjct: 121 PRERLLVTVYHDDDEAYGLWKKIAGFSDDRIIRIASSDNFWSMGDLGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQ++Q    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 ESVAGGPPGSPDEDGDRFLEFWNLVFMQYDQTAPGERVPLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +DIDLF+ L  A    TG+   G    +HRVI DHLR+S+FL+ADG+ P+NEGRGY
Sbjct: 241 VHSVFDIDLFRRLTGAVADATGVDAAGPQAASHRVIADHLRASAFLVADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL TEM  AYPEL +A+ LI +TL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAAEPLMHRLVGALVTEMAQAYPELTRAERLIRDTLLTEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL +LD   + L +   L+G+ AFKLYDT+G PLD+ +D L +RGL+ +D   F 
Sbjct: 361 QTLARGLAILDEETATLAQGGSLSGETAFKLYDTYGFPLDLTEDALRSRGLS-VDKAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR+ AR    G G   TE +WF+++E+ GAT+F+GYD                  
Sbjct: 420 TAMARQRAEARKAWAGSGETATESVWFAIEERVGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T     IV A++  G        G +  V+ +QTPFYAE+GGQ+GD G     G+
Sbjct: 462 -----TEKSEGIVVALLHDGAETFRLEPGARGAVLLNQTPFYAESGGQIGDIGEMRAKGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKK  G+FVH  +VE G +   ++L L ID+  R  +  NHSATH+LH AL  
Sbjct: 517 RFRVTNTQKKLGGLFVHEGVVEEGAITPGLALELEIDHSRRNAVRANHSATHILHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  D LRFD TH KP+T  E+  +E   N+++  N PV TR+M ++DA
Sbjct: 577 VLGDHVAQKGSLVASDRLRFDFTHPKPLTEEEVAEVERIANEVVQDNAPVDTRLMAQDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-------------ALCGGTHVSSTGEIM 706
           I SGA AL G KY D VRVVS+     G  S+              LCGGTHV  TG+I 
Sbjct: 637 IHSGARALFGEKYGDEVRVVSMGSLSTGQPSTDLAPTDQHHAFSVELCGGTHVRRTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ IVS+ ++ +G+RRIEA T + AR+ L+     L+ +A+ ++V       R+  + EE
Sbjct: 697 LVSIVSQGAVASGVRRIEAKTAEAARAQLVADSRALREVAALVRVPVDETPARLAALLEE 756

Query: 767 YRKL--QLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++L  +L  AKRKL             +I  +   +  +S +D K+LKS++D  +K + 
Sbjct: 757 RKQLERELAEAKRKLAMGGGANGAAPVREIDGIKLFAKAVSGIDPKDLKSLVDEQKKALG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG++ +   S + KA +++ VT DL   +NAVDL R +++ LGG GGGGRP +AQ+GGP+
Sbjct: 817 SGVVAIASASADGKAGIVVGVTADLTTTYNAVDLVRAASEKLGGKGGGGRPDLAQAGGPD 876


>gi|23016227|ref|ZP_00055985.1| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 877

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/895 (49%), Positives = 595/895 (66%), Gaps = 36/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 4   MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW+L+TK+F +
Sbjct: 64  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWNLITKDFGI 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY +D++A   WKKI+GL   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 124 DKNRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 183

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  ++G+R+IEIWNLVFMQFEQ +K+ R  LPK SIDTGMGLER+A +LQ 
Sbjct: 184 DHIPGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRVPLPKPSIDTGMGLERLAALLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD+DL + LI+AS + +    +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 244 KHDNYDVDLLRALIEASAESSNTDADGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G +EPL+  L+PAL  +MG AYPEL++A  LI ETL+ E+ RF 
Sbjct: 304 VLRRIMRRAMRHAHLMGCSEPLLWKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  ++ +G    L G+VAFKLYDT+G PLD+ QD L A+G+ G+D   F 
Sbjct: 364 VTLDKGLKLLDDEITRIGSAGKLAGEVAFKLYDTYGFPLDLTQDALKAKGI-GVDTDGFA 422

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF L+EK GA++F+GYD                  
Sbjct: 423 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGD 537
                       + A+V+ G++VE    G  V V+ +QTPFY E+GGQ+GDTG     G 
Sbjct: 465 -----AEQAEGKIVALVENGKVVEAVHPGHSVAVIANQTPFYGESGGQMGDTGIITVAGG 519

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              + +TD QKK   + VH   VE G +         +D   R     +HSATHLLH  L
Sbjct: 520 KATITVTDTQKKLGDLVVHFGTVEGGPVAVGEDAHFAVDSSRRDATRGHHSATHLLHAVL 579

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV+Q GS + PD LRFD  H+K ++  E +++E  VN  I  N  V T +M  +
Sbjct: 580 RGILGDHVTQKGSQVGPDRLRFDFAHTKALSPEESRAVEAEVNRRIRVNAEVATTVMTPD 639

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DAI +GA AL G KY + VRVVS+     G  S+ LCGGTH   TG+I    IV+ES++ 
Sbjct: 640 DAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHARRTGDIGGFKIVAESAVA 694

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG    +    Q++ L   A  LK +  ++  R+  + +E RKL+   A+ 
Sbjct: 695 SGVRRIEAVTGPAFLAWAQAQEDLLARAADTLKAAPTDLPARIAGLMDERRKLERELAEV 754

Query: 778 KLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + QL     +  +   +  + +   +++ V  K+LK + D ++K+I SG+I+LV    + 
Sbjct: 755 RKQLATGGGQGAATKTVNGITYAGKVLNGVPPKDLKGMADEIKKQIGSGVIVLVS-DADG 813

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           KAS+++ VTEDL  +++AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A  A+
Sbjct: 814 KASIVVCVTEDLTAKYSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAV 868


>gi|83312631|ref|YP_422895.1| alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123541005|sp|Q2W1D9|SYA_MAGMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82947472|dbj|BAE52336.1| Alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 878

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/899 (49%), Positives = 598/899 (66%), Gaps = 40/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK+F +
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDLAIEHAWNLITKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY +D++A   WKKI+GL   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DKSRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  ++G+R+IEIWNLVFMQFEQ +K+ R  LPK SIDTGMGLER+A +LQ 
Sbjct: 181 EHIFGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRIPLPKPSIDTGMGLERLAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD+DL + LI+AS + +    +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDVDLLRALIEASAEASNTDPDGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG AYPEL++A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLHKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  ++ +G  + L G+VAFKLYDT+G PLD+ QD L A+G+ G+D   F 
Sbjct: 361 VTLDKGLKLLDDEITRIGSGQKLAGEVAFKLYDTYGFPLDLTQDALKAKGI-GVDTDGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF L+EK GA++F+GYD                  
Sbjct: 420 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC------ 533
                       + A+V+ G++VE    G +V V+ +QTPFY E+GGQ+GDTG       
Sbjct: 462 -----AEQAEGKIVALVENGKVVEAVHPGHQVAVIANQTPFYGESGGQMGDTGVITLGTP 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G    + +TD QKK   + VH   VE G +         ++   R     +HSATHLL
Sbjct: 517 GTGGKATIAVTDTQKKLGDLIVHFGTVEGGPVAVGEDAHFAVESTRRDATRGHHSATHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ILG HV+Q GS + PD LRFD  H+K +++ E +++E  VN  I  N  V T++
Sbjct: 577 HAALRDILGDHVTQKGSQVGPDRLRFDFAHTKALSAEETRAVEAEVNRRIRLNAEVATKV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DAI +GA AL G KY + VRVVS+     G  S+ LCGGTH + TG+I    IV+E
Sbjct: 637 MTPDDAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHANRTGDIGGFKIVAE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG    +    Q++ L   A  LK +  ++  R+  + ++ RKL+  
Sbjct: 692 SAVASGVRRIEAVTGPAFLAWAQAQEDLLAKAADTLKAAPADLPARIAGLMDDRRKLERE 751

Query: 774 HAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            A+ + QL     +  +   +  + +   ++S V +K+LK + D ++K+I SGII LV  
Sbjct: 752 LAEVRKQLATGGGQGAATKTVNGITYAGKVLSGVPAKDLKGMADEIKKQIGSGIIALVS- 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + KAS+++ VTEDL  + +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A  A+
Sbjct: 811 DADGKASIVVCVTEDLTSKHSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAV 869


>gi|83858787|ref|ZP_00952309.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83853610|gb|EAP91462.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 886

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/909 (49%), Positives = 602/909 (66%), Gaps = 38/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ +  IR+ FL+FF K GHE++ S+ L+P +DPTL+F N+GMVPFKN+FTG E+  Y  
Sbjct: 1   MTALRDIRSQFLDFFAKEGHEIVQSAPLVPQDDPTLLFVNAGMVPFKNVFTGAERRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW ++T+EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDNAIEFAWKMVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY ED+EA  LW+KI+GLS D+IIRI+T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYSEDDEAAALWRKIAGLSDDRIIRISTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PG+ EE G+R+IEIWNLVFMQFEQQ   ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PDIWGGPPGTPEEDGDRFIEIWNLVFMQFEQQAGGERINLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI ASE+   +K EG+ + +HRVI DHLRS+SFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKTLINASEEALKVKAEGDALASHRVIADHLRSTSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EP++  L   L  EMG A+PEL +A  +IEETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAHLLGANEPVLFGLAKTLSDEMGEAFPELPRALPVIEETLRGEEERFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD   ++L + + L G+ AFKLYDT+G PLD+ +D L  RGL+ +D   F+
Sbjct: 361 RTLGRGLTLLDEATANLKEGDALPGETAFKLYDTYGFPLDLTEDALRTRGLS-VDHAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G    E +WFS++++ GAT F+GY                   
Sbjct: 420 AAMERQRADARASWTGSGQAAPEALWFSVRDRLGATDFVGYH------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                T+   S + AIV  G    E  +GQ  E++F  TPFYAE GGQ+GD G    D G
Sbjct: 462 -----THDGQSELTAIVSDGAEQSELSAGQGAELIFKSTPFYAEGGGQIGDAGVITFDNG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R  ++DVQK+A  I+ H  ++E G ++   +   ++D + R ++  NHSATHLLH AL 
Sbjct: 517 ARFIVSDVQKRAGSIYAHIGVLEEGGIKIGDAASQSVDAERRTKVRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H+K +T AE  +IE  VN +I QN    T  M  E 
Sbjct: 577 DVLGPHVTQKGSYVGPDRLRFDFSHAKALTEAETAAIEAQVNAVIRQNAEAKTAEMTPEK 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY + VRV+++      D   +S  LCGG HV+ TG+I L  IV ESS
Sbjct: 637 AIEAGALALFGEKYGETVRVLAMGDSLKSDDKAYSVELCGGIHVNRTGDIALFKIVGESS 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
             AG+RR+EA+TG+ AR  L  +  K K  A+ LKV    +V R+E +  E + L  QL 
Sbjct: 697 AAAGVRRLEAVTGEAARQWLEAEANKAKDAAAALKVPTVELVERIEALQAERKTLERQLA 756

Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            AK++L +              +I  +  ++ ++  V  K+L+ ++D  +K++ SGI   
Sbjct: 757 EAKKQLAMGGGGGGGAAPAGPEEINGIKLIARVVEGVGGKDLRGLVDEARKQMGSGIAAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG++ + KA++ + +T+DL    +AVD  R  +  +GG GGGGRP  AQ+GGP+G+KA+ 
Sbjct: 817 VGVN-DGKAALAVGLTDDLTGSMSAVDFVRAGSAAVGGKGGGGRPDFAQAGGPDGDKAED 875

Query: 888 AIAGVASFL 896
           A+A +   L
Sbjct: 876 ALAAIRQVL 884


>gi|260752686|ref|YP_003225579.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552049|gb|ACV74995.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 890

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/914 (49%), Positives = 600/914 (65%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 1   MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G+VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +G              
Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                    S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G+  
Sbjct: 466 ---------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636

Query: 659 AIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+     +  +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756

Query: 772 LIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  A++ L L          + +  K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 757 LADAQKALALANANGGQGSNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ ++ E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 817 IALITVN-EGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 876 AAQALEAVKALLEK 889


>gi|241762269|ref|ZP_04760350.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373172|gb|EER62802.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 930

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/914 (49%), Positives = 600/914 (65%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 41  MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 100

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 101 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 160

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 161 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 220

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 221 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 280

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 281 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 340

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 341 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 400

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G+VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 401 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 459

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +G              
Sbjct: 460 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG-------------- 505

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                    S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G  IG+  
Sbjct: 506 ---------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVIIGNND 556

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 557 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 616

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K +T  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 617 DQLGQHVSQKGSMVSAERLRFDFSHQKALTDQELAAIEAEVNQQILNNSVVTTRLMTPES 676

Query: 659 AIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+     +  +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 677 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 736

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 737 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 796

Query: 772 LIHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  A++ L L   +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 797 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 856

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ ++ E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 857 IALITVN-EGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 915

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 916 AAQALEAVKALLEK 929


>gi|283856345|ref|YP_162580.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|59802972|sp|Q9RNN8|SYA_ZYMMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|283775342|gb|AAV89469.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 890

 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/914 (49%), Positives = 598/914 (65%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 1   MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +G              
Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                    S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G+  
Sbjct: 466 ---------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636

Query: 659 AIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+     +  +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756

Query: 772 LIHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  A++ L L   +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 757 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ ++ E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 817 IALITVN-EGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 876 AAQALEAVKALLEK 889


>gi|288960191|ref|YP_003450531.1| alanyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288912499|dbj|BAI73987.1| alanyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 889

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/899 (50%), Positives = 591/899 (65%), Gaps = 45/899 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF K GH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MQTANDIRRTFLDFFAKQGHQIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGAETRPYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+TKE+ L
Sbjct: 61  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIAFAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TV+  DE+A  +W+K++GLS D+IIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PADKLLVTVHTSDEDAAAIWRKVAGLSDDRIIRIPTDDNFWRMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ+EQ        LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDNLVPLPKPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDL + LI AS + T    +G + V+HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLMRALIMASAEATKTAADGAHAVSHRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+PAL  +MG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMIGAREPLMHRLVPALIQQMGDAYPELNRARALIVETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  + HLG+ + L GDVAFKLYDT+G PLD+ QD+L  +   G+D   F 
Sbjct: 361 QTLERGLRLLEDEVGHLGEGQPLAGDVAFKLYDTYGFPLDLTQDVLRGQN-RGVDEAGFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQR +AR    G G   TEK+W+ +K++ GAT+F GYD                  
Sbjct: 420 AAMDEQRRKARESWAGSGEVGTEKLWYEIKDELGATEFFGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                T      V AIV+    VE A  G +V VV +QTPFY E+GGQ+GD G      G
Sbjct: 462 -----TEVAEGKVTAIVKGDTRVEAAAIGDQVMVVVNQTPFYGESGGQVGDAGVIFSAGG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + ++D  KK   ++ H   V +GIL     + L +D   R  +  NHSATHLLH AL 
Sbjct: 517 AEVAVSDTLKKLGAVWAHVGTVTKGILSVGDVVELRVDSSRRAAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS + P+ LRFD++    +T+A++ +IED VN  +  N  VVTR+M+ ++
Sbjct: 577 HRLGDHVTQKGSLVAPERLRFDISQPTGLTAADIAAIEDEVNRRVLANSEVVTRLMSPDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVH-------SSALCGGTHVSSTGEIMLLYIV 711
           A A GA AL G KY D VRVVS+    GG H       S  LCGGTHV  TG+I +  IV
Sbjct: 637 ARAQGAMALFGEKYGDEVRVVSM----GGPHGELDRDYSIELCGGTHVRRTGDIGVFKIV 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE ++ AG+RRIEA+TG  A++ L  +D  L   AS LKV    V  RV  + EE RK++
Sbjct: 693 SEGAVAAGVRRIEALTGTGAKAWLSERDHLLTEAASVLKVKPDEVPARVATLVEERRKME 752

Query: 772 LIHAKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              A  + Q+ +   +          +A V   + ++  + +K+LK + D L+K++ SG+
Sbjct: 753 RELADLRRQVAMGGGAKADGGNEAKDVAGVKLAARVVEGLPAKDLKPMADELKKQVGSGV 812

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++L+  S E KAS++I VT+DL    +AVDL R+ A+ LGG GGGGRP MAQ+GGP+ +
Sbjct: 813 VVLIA-SNEGKASIVIGVTDDLTGSLSAVDLVRVGAEALGGKGGGGRPDMAQAGGPDAS 870


>gi|114800099|ref|YP_761420.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123322977|sp|Q0BYM3|SYA_HYPNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114740273|gb|ABI78398.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 881

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/906 (50%), Positives = 593/906 (65%), Gaps = 35/906 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR TFL FF+KNGH   PS+ L+P NDPTL+F N+GMVPFKNIFTG EKP    
Sbjct: 1   MNGVNDIRETFLGFFEKNGHARRPSAPLVPQNDPTLLFVNAGMVPFKNIFTGAEKPFAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A+ LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAVALAWELVTKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY EDEEA  +WKK++GL   +IIRI T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 DAKRLLVTVYAEDEEAPAIWKKVAGLDDSRIIRIATSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS  E+G+R+IEIWNLVFMQFEQ    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKVAGGPPGSPDEDGDRFIEIWNLVFMQFEQHEGGKRTNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+ LI A E+V G K  G+   + RVI DHLR+S+FL+ADGILP+NEGRGY
Sbjct: 241 VHNNYDIDLFRALIAAEEEVYGQKASGDKTASFRVIADHLRTSAFLVADGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  +LG  EP M  L+PAL  EMG AYPEL +A++ IE  +  E+ RF 
Sbjct: 301 VLRRIMRRAMRHGHMLGAREPQMHRLVPALVAEMGKAYPELGRAQVAIEAAIEQEEARFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD   S L   E L GDVAF+L DT G PLD+ QDIL  RG+  +D+  F 
Sbjct: 361 RTLGNGLSLLDKAASELSPGEALPGDVAFRLSDTFGFPLDLTQDILRGRGIE-VDVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            AL+ QR  +RA     G   TE+IWFS++++ G T+F GY    G     E R +    
Sbjct: 420 TALDAQRETSRAGGFSSGDQATEEIWFSVRDEKGPTKFTGYSSTAG-----EGRLI---- 470

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                         AI   G ++E   +G   E+VFD TPFYAE+GGQ GD G     DG
Sbjct: 471 --------------AIAAGGALIETVTAG-PAELVFDATPFYAESGGQAGDHGEIVFEDG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R  + DVQK+A  + VH   +  G ++T M   ++++   R+ +  NHSATHL+H AL 
Sbjct: 516 ARFVVRDVQKRAGDLHVHIGELVSGSVKTGMKAQMSVNAARRKAVMANHSATHLMHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +  D  RFD +H  P+T+A+L++IED VN  I  N+    ++   + 
Sbjct: 576 KVLGPHVTQKGSLVEADRFRFDFSHGAPVTAAQLEAIEDEVNAQIRANIETGIKVTTPDK 635

Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI +GA AL G KY D VRV+S+    E G  +S  LCGG HVS +G+I +  I+SE  +
Sbjct: 636 AIEAGALALFGEKYGDEVRVLSMGDAGEGGRPYSVELCGGIHVSRSGDIAVFTILSEGGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AGIRRIE  TG  A ++L G+ +    +A  LKV   ++  RV  + EE R L  +L  
Sbjct: 696 SAGIRRIEGATGAEALAYLKGRAQIAADVAESLKVPLKDLPRRVASLTEERRTLERELSE 755

Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           AKRKL +     +      I  VN ++ +   V  KEL++++D  + KI S  +++    
Sbjct: 756 AKRKLAMGGGGGAPAGPEVINGVNLIARVAEGVGGKELRALVDEAKSKIGS-GVVVFVGV 814

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              KA V I VT+DL ++F+AV+L + +A  +GG GGGGRP MAQ+GGP+G+KA++A+  
Sbjct: 815 DGGKAGVAIGVTKDLTEKFSAVELVKAAAAAIGGQGGGGRPDMAQAGGPDGDKANEALEA 874

Query: 892 VASFLK 897
           V + LK
Sbjct: 875 VRAALK 880


>gi|83594150|ref|YP_427902.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123525949|sp|Q2RQI0|SYA_RHORT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83577064|gb|ABC23615.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 883

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/891 (49%), Positives = 596/891 (66%), Gaps = 35/891 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS  S IR TFL+FF KNGH+ + SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSTTSEIRRTFLDFFVKNGHQEVASSPLVPLNDPTLMFTNAGMVQFKNVFTGAETRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW L+T+E+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDFAWRLITEEYAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+  DE+A  LW+K++GL  ++IIRI TNDNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVHTSDEDAAGLWRKVAGLPDERIIRIPTNDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS++E G+R+IEIWNLVFMQFEQ    +R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PKVAGGPPGSADENGDRFIEIWNLVFMQFEQLTVDQRVALPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDL + LI+A     G   +G + V+HRVI DHLRS+ FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLMRALIEAIASAAGTDPDGPHKVSHRVIADHLRSACFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  +PLM  L+PAL  EM   +PEL +A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMMGCVDPLMFKLVPALNREMADQFPELNRANALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           + LDRGL LL      L   + L G VAFKLYDT+G PLD+ QD L  RG+ G+D   F+
Sbjct: 361 QMLDRGLKLLAEETGDLASGDSLPGPVAFKLYDTYGFPLDLTQDALRPRGI-GVDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR  AR    G G   TE +WF ++++ GA++F+GY                   
Sbjct: 420 AAMARQREDARKSWTGSGDHATEAVWFDIRDRVGASEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                T+   +IV A+V  G++VE A +  +V V+ +QTPFY E+GGQ+GD G   + +G
Sbjct: 461 ---TSTDAEGAIV-ALVVDGKVVESAPADTEVAVIANQTPFYGESGGQMGDAGEIRLAEG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ + D  KK   + VH   VE   +R   +    +D + R  L  +HSATHLLH AL 
Sbjct: 517 GKVVVRDTAKKLGALHVHIGRVEGATIRVGQAARFVVDTERRDALRSHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS + PD LRFD++H KP+++AE++ +ED+VN  I  N  + T+IM+ + 
Sbjct: 577 RRLGEHVTQKGSLVAPDRLRFDISHPKPLSAAEIRVVEDDVNREIRANAEITTQIMDPDS 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY + VRVVS+   + G +   S  LCGGTH   TG+I    I+ E +
Sbjct: 637 AIEAGAMALFGEKYGEEVRVVSMGRREPGANRPFSVELCGGTHARRTGDIGFFKIIGEGA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773
           + +G+RRIEA+TGQ A  H+  QD+ +   A  LKV+  ++ GR++ + ++ R+L+  L 
Sbjct: 697 VASGVRRIEAVTGQAAFEHIEAQDDLVSGAAQLLKVTPADLPGRIQALLDDRRRLERDLA 756

Query: 774 HAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            A+RKL       +   + ++N   ++  ++ +V +K+LK ++D ++K++ SG++ L+ +
Sbjct: 757 DARRKLATGGGGAAAPAVVEINGVKWVGRLLEDVPAKDLKGMVDEVKKQLGSGVVALIAV 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + + KAS+++ VTEDL+ RF+AV L R  A  +GG GGGGRP MAQ+GGP+
Sbjct: 817 A-DGKASLVVGVTEDLVGRFDAVALVRAGAGAIGGKGGGGRPDMAQAGGPD 866


>gi|114569559|ref|YP_756239.1| alanyl-tRNA synthetase [Maricaulis maris MCS10]
 gi|122316388|sp|Q0AQY6|SYA_MARMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114340021|gb|ABI65301.1| alanyl-tRNA synthetase [Maricaulis maris MCS10]
          Length = 884

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/907 (48%), Positives = 601/907 (66%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++  IR TFL++F K+ HE++PS+ L+P +DPTL+F N+GMVPFKN FTGQEK     
Sbjct: 1   MASLRDIRATFLDYFAKHEHEVVPSAPLVPQDDPTLLFVNAGMVPFKNSFTGQEKRASLR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAISHAWNLVTGEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY EDE+A  LW+KI+GL+ D+II I+T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PAEKLLVTVYAEDEQARALWRKIAGLTDDRIIGISTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ+EQ    ER  LPK SIDTGMGLER++ +LQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDERINLPKPSIDTGMGLERISAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K NNY+ DLF++LI A E V G+K EG+ + +HRVI DHLRS+ FL+ADG+ P+NEGRGY
Sbjct: 241 KHNNYETDLFRNLIAAGESVLGVKAEGDALASHRVIADHLRSTCFLMADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EP+M  L+ AL +EMG AYPEL +A+ L+EETL+ E+ERF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAGEPVMWKLVDALKSEMGDAYPELERAQALLEETLQVEEERFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LL+   + +G+ + L G  AFKLYDT+G PLD+ QD L A+G+  +D   FN
Sbjct: 361 RTLGRGLSLLEEATADMGEGDALAGATAFKLYDTYGFPLDLTQDALRAKGMT-VDEAGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR+ ARA     G    + +WF++++K GAT F GY                   
Sbjct: 420 SAMDKQRADARASKFSSGDAAPDAVWFAVRDKVGATAFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                  G    + AIV  G+  +   SGQ+ E+VFD+TPFY E+GGQ GDTG     DG
Sbjct: 461 ----AGTGGKGRLTAIVSGGQEAKALGSGQRAELVFDETPFYGESGGQCGDTGEIRFVDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D QK+   +  H  ++ +G +       L  D   R  +  NHSATHL H AL 
Sbjct: 517 AVFTVEDTQKRGGDMHAHIGVLTKGEITLGDVAALDADAPRRAAIRANHSATHLAHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS + PD LRFD +H+K +++ ++ +IE  VN +I QN+PV TR M  + 
Sbjct: 577 DVLGAHVTQKGSHVGPDRLRFDFSHNKSVSADQIAAIEAQVNAVIRQNVPVSTREMTPDA 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY D VRV+++     +    +S  LCGGTHV  TG+I L  I++E++
Sbjct: 637 AIEAGALALFGEKYGDTVRVLAMGQGLADHATPYSVELCGGTHVERTGDIALFKIIAETA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + +GIRRIEA+TG+ AR ++  Q    ++ A  LK    ++  RV  + +E RKL  QL 
Sbjct: 697 VSSGIRRIEAMTGEGARLYMDEQIGFGRAAADALKTPPSDLATRVAALVDERRKLERQLA 756

Query: 774 HAKRKL----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            AK++L      +        I  VNF+  ++  V  K+L+ ++D  + ++ SG+   +G
Sbjct: 757 EAKKQLAMGGGASGAPAGPETINGVNFIGRVVEGVGGKDLRGLIDEAKAQMGSGVAAFIG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + KA++ + VT+DL DRF AVDL +  A  +GG GGGGRP  AQ+GGP+G KA+  +
Sbjct: 817 VN-DGKAALAVGVTDDLKDRFVAVDLVKAGAAAVGGKGGGGRPDFAQAGGPDGAKANDGL 875

Query: 890 AGVASFL 896
           A + + L
Sbjct: 876 AAIRAAL 882


>gi|197104453|ref|YP_002129830.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|196477873|gb|ACG77401.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 880

 Score =  856 bits (2211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/905 (48%), Positives = 595/905 (65%), Gaps = 36/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IRT FL+FFQ+  H ++PS+ L+P NDPTL+F N+GMVPFKN FTG E   +  
Sbjct: 1   MASLNEIRTHFLDFFQRKEHAVVPSAPLVPQNDPTLLFVNAGMVPFKNYFTGAEASPWPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI  AW+LLTKE+ L
Sbjct: 61  AASSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISHAWELLTKEWAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY  D+EA  LWKKI+GL   KI+RI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PVEKLMVTVYHTDDEAAALWKKIAGLPDHKIVRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG PGS  E+G+R++EIWNLVFMQFEQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EHIPGGPPGSPDEDGDRFVEIWNLVFMQFEQFADGTRADLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-NHRVIVDHLRSSSFLIADGILPANEGRG 298
             +NYD+DLFK LI +++    ++ EG++   +HRVI DHLRSSSFLIADG+LP+NEGRG
Sbjct: 241 VHDNYDVDLFKDLIASTK--AQLRAEGSDTTPSHRVIADHLRSSSFLIADGVLPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRIMRRAM +A LLG  EPLM  + P L   MG AYPEL +A+  I ETLR E+ERF
Sbjct: 299 YVLRRIMRRAMRHAHLLGADEPLMHRVAPTLVNLMGEAYPELRRAEPAIVETLRQEEERF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL RG+ LL+   + L   ++L+G+ AFKLYDT+G PLD+ QD + A+GL  +++  F
Sbjct: 359 RRTLGRGMTLLEEATAGLKDGDVLSGETAFKLYDTYGFPLDLTQDAVRAKGLT-VNLDEF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            QA+  QR  AR + +G G       WFS++++ G + F GYD                 
Sbjct: 418 EQAMARQREMARENWVGSGQVAAAAEWFSIRDRLGPSDFTGYD----------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     +  +  +V +G+ +E A +GQ+V+ +FD+TPFYAE+GGQ GD G     G
Sbjct: 461 ------NTEATGELLVLVSEGQEIERAGAGQRVQALFDRTPFYAESGGQAGDQGEVEWQG 514

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R ++TDVQK+A  + VH   +  G L     + L +D + R     NHSATHLLH AL 
Sbjct: 515 GRARVTDVQKQAGDLHVHDLEILEGELVPGARVRLAVDAERRASTRSNHSATHLLHAALR 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q G  +  + +RFD +H +P+T+ E++ IE  VN ++ QNLP  T+ M  ++
Sbjct: 575 NVLGKHVTQKGQMVDGERIRFDFSHGQPLTAEEIERIEAEVNAVVRQNLPAQTKNMRPQE 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-DG-GVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI +GA AL G KY D VRV+++    DG G +S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 635 AIDAGAMALFGEKYGDSVRVLTLGRALDGEGDYSVELCGGTHVARTGDIALFKIVSEQGV 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEA+TG+ AR +L+ Q    KSLA   KV    V  R+E +  + RKL  +L  
Sbjct: 695 AAGVRRIEALTGEAARRYLLEQASVAKSLAEQFKVPVSEVSARIEALQAQARKLEKELAD 754

Query: 775 AKRKLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           AKR+L +     +     +I  V  M+ ++  V  K+L+ + +  +K++  G+I LVG++
Sbjct: 755 AKRQLAMGGGGGAAAGPEEIGGVKVMARVMEGVGGKDLRPIAEEFKKQLPDGVIALVGVA 814

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + KA+V + VT     +FNA +LA+ +   +GG G GGRP  AQ G P+ +KA + +A 
Sbjct: 815 -DGKAAVTVAVTGSATAKFNAAELAKAAVLAMGGQGAGGRPDFAQGGAPDASKAAEGLAA 873

Query: 892 VASFL 896
           V + L
Sbjct: 874 VKALL 878


>gi|144899258|emb|CAM76122.1| Alanyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 881

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/904 (50%), Positives = 599/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   ++IR  FL++F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MQTANTIRRAFLDYFAKNGHEVVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI LAW+L+TKEF L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIALAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+EAF +WKK++G S D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 AKDKLLVTVYHDDDEAFNIWKKVAGFSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  ++G+R+IEIWNLVFMQFEQ +KQ R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKIAGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKQTRLPLPKPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYD+DL + LI+AS   +    +G   V+HRV+ DHLRSS FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDVDLLRALIEASAHESNTDADGPYKVSHRVVADHLRSSCFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L PAL  +MG AYPEL +A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLWRLFPALAKQMGEAYPELGRAGALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  L+HL     L G+VAFKLYDT+G PLD+ +D L A+G+ G+D   F 
Sbjct: 361 ATLDKGLKLLDDELTHLVPGAKLAGEVAFKLYDTYGFPLDLTEDALKAKGI-GVDTDGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ AR    G G   TE +WF +KEK GA++F+GYD +                
Sbjct: 420 TAMDRQRAEARKAWSGSGEAATETLWFEIKEKTGASEFLGYDAI---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGD 537
                  G    + A+V+ G+ VE    G +V VV +QTPFY E+GGQ+GDTG     G 
Sbjct: 464 -------GAEGQIVALVEGGKAVEAVHPGHEVMVVANQTPFYGESGGQMGDTGIISVAGG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R+ +TD  KK   + VH   VE G +         +D   R     +HSATHLLH AL
Sbjct: 517 KARIVVTDTLKKLGDLIVHVGKVEGGPVAVGEDAHFAVDETRRDATRGHHSATHLLHQAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG HV+Q GS + PD LRFD  H K +++ E++ +E  VN  I +N  VVT++M+ +
Sbjct: 577 RDALGEHVTQKGSQVGPDRLRFDFAHPKGLSTDEIRLVEAEVNRQIRKNRAVVTKLMSPD 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           DAI +GA AL G KY + VRVVS+  +D      S  LCGGTHV   G+I    I+SES+
Sbjct: 637 DAIEAGAMALFGEKYGEEVRVVSMGGDDSRPNPFSVELCGGTHVRRVGDIGGFKILSESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RR+EA+TG    +    Q+E L   A  LK +   +  R+ ++ E+ RKL+   +
Sbjct: 697 VAAGVRRVEAVTGPAFLAWANEQEELLARAAQALKAAPAELPARIAQLVEDRRKLERELS 756

Query: 776 KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + + QL     +      +N   +   ++  V +K+LK + D ++K+I SG+++LV  + 
Sbjct: 757 ETRKQLATGGGAGAATTQINGITYAGRVLDGVPAKDLKGMADEIKKQIGSGVVVLVS-ND 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             KASV++ VT+DL  + +AVDL R+ ++ +GG GGGGRP MAQ+GGP+ +KA  A+  +
Sbjct: 816 GGKASVVVAVTDDLTAKHSAVDLVRIGSEAVGGKGGGGRPDMAQAGGPDADKAQDAVDKI 875

Query: 893 ASFL 896
           A+ L
Sbjct: 876 AAAL 879


>gi|58040217|ref|YP_192181.1| alanyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81556989|sp|Q5FQ21|SYA_GLUOX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58002631|gb|AAW61525.1| Alanyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 879

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/889 (48%), Positives = 582/889 (65%), Gaps = 31/889 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR+ FLE+F   GH ++PS+SL+P NDPTL+FTN+GMVPFKN+FTGQE   Y  
Sbjct: 1   MTSTNDIRSAFLEYFGSQGHRIVPSASLVPQNDPTLLFTNAGMVPFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW LLT++F L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY EDE+A  LWKKI+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLATVYAEDEDAADLWKKIAGLSDDRIIRIGTSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS  E+G+R++EIWNLVFMQF  Q    R  LP+ SIDTGMGLER A ++Q 
Sbjct: 181 DSVFGGPPGSPDEDGDRFVEIWNLVFMQFLDQPDGSRDALPRPSIDTGMGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI+AS ++     +G    +HRV+ DHLRS++FLIADG+LP+ EGRGY
Sbjct: 241 KRDNYDTDTMRALIEASAEIMHQDADGPFKASHRVVADHLRSTAFLIADGVLPSKEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G  EP+   LLPAL  +MG+AYPEL+Q + LI +T++ E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHIMGAKEPVFYRLLPALIQQMGAAYPELVQHQALIAQTMKGEEERFT 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL   L  LG  E L GDVAFKLYDT G PLD+ QD L  +G   +D   F 
Sbjct: 361 ALLERGLTLLSDELDRLGDKEALPGDVAFKLYDTFGFPLDLTQDALREKGRT-VDEAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA  +G G    E +WF  ++K+G ++F+GY                   
Sbjct: 420 TAMAEQRKRARAAWVGSGDAAAETVWFDARDKHGPSEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               ++    + V+ I +  + +  A +G   V ++ +QTPFY E+GGQ+GD G     G
Sbjct: 461 ----VSEKADAEVQGIFRGNDELASAPAGDDTVAILLNQTPFYGESGGQVGDHGTLTAPG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R++ITD QK+   + VH+  V  G L+  M++   ID+  R  +  +HSATHLLH AL 
Sbjct: 517 VRVEITDTQKRNGDLIVHYGKVVEGTLKPGMAVHAEIDHARRTAVRGHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G+HV+Q GS   P+ LRFD++  +P+T  EL ++E  VN  I +N PV TR+M +E+
Sbjct: 577 RQIGTHVTQKGSLNAPERLRFDISQPRPLTDEELAAVEAEVNARIRENAPVETRLMTQEE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+A GA AL G KY D VRVVS+    +D   +S  LCGGTHV   GEI    IVSES +
Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGKGDDDRPAYSIELCGGTHVGRVGEIGPFRIVSESGV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEA+ G  A +  +  + +LK +A  LKV   +   RV  + EE + L  Q+  
Sbjct: 697 SAGVRRIEAVCGLAAEALALETESRLKQIADLLKVPVADAASRVAALLEERKSLTAQVSD 756

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +RKL       +   I  +   +  + +V  KELK + +++ K+I SG++ L+  S + 
Sbjct: 757 LQRKLATGEGTSATESINGITLSARDLGDVSPKELKGLAESISKQIASGVVALMS-SADG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           + S++I VT+DL DR +AV L R ++ ++GG GGGGRP MAQ+GGPN +
Sbjct: 816 RGSIVIAVTKDLTDRLDAVKLVREASALMGGKGGGGRPDMAQAGGPNAD 864


>gi|85374371|ref|YP_458433.1| alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|122544241|sp|Q2N9K5|SYA_ERYLH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84787454|gb|ABC63636.1| AlaS, alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 887

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/903 (49%), Positives = 601/903 (66%), Gaps = 36/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FL++F   GH  + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MQSTNDIRRSFLDYFTGAGHAEIASAPLVPYNDPTLMFVNAGMVPFKNVFTGLETPPAPT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+ AW LLT+E+ +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIEHAWTLLTREWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL  TVY  D+EA+  W+KI+GL  ++IIRI T DNFW+M + GPCGPCSEIFFD G
Sbjct: 121 DAARLTATVYHTDDEAYDFWRKIAGLPEERIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++E+WNLVFMQ EQ   +    LP  +IDTGMGLER+A V+Q 
Sbjct: 181 DHIFGGPPGSPEEDGDRFVEVWNLVFMQHEQTGGEITGDLPNKNIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +TG+K EG+   +HRVI DHLRS+SFLIADG+LP++EGRGY
Sbjct: 241 VHDNYDTDTFKELIGASEGLTGVKAEGDQAASHRVIADHLRSTSFLIADGVLPSSEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L+PAL TEMG AYPEL + + LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVTEMGQAYPELTRGQALIEETLEREEARFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     + + + L+G+ AFKLYDT+G P D+ +D L  RG+A +D   F 
Sbjct: 361 QTLEKGLRLLDDATGDMSEGDTLDGETAFKLYDTYGFPYDLTEDALRPRGIA-VDETGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  ARA   G G     ++WF + E+ GAT+F GY                   
Sbjct: 420 SAMQRQKDAARAAWKGSGQAADSEVWFDIAEREGATEFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538
                T+G   +V A+V+ G+ V+ A +G +V ++ +QTPFY E+GGQ GD G  +  DG
Sbjct: 461 ---TSTSGEGRVV-ALVKNGKEVDSASAGDEVVILTNQTPFYGESGGQTGDAGTMSTPDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++++TD  K    +  H A ++ G +    +L L +D   R ++  NHSATHL+H AL 
Sbjct: 517 VKVEVTDTGKPLGRLHTHQAKIQSGTVLKGDTLHLDVDVDRRDRVRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD +H KP++  ++ +IE  VN+ I  N  V TR+M+ +D
Sbjct: 577 NRLGEHVTQKGSLVAEDRLRFDFSHPKPLSEDDIAAIEAEVNEEIRANETVTTRLMSPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+ +GA AL G KY + VRV+S+    ++G  +S  LCGGTHV +TG+I L  I+SES++
Sbjct: 637 AVDAGALALFGEKYGEEVRVLSMGRRSKEGRNYSVELCGGTHVRATGDIQLFRIISESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEA+TG  AR  L+ ++E LKS AS L+ +   V  RV  + +E + L  +L  
Sbjct: 697 SSGVRRIEALTGDAARQWLVRREEALKSAASALRTNPEEVAERVAALLDERKALEKELAD 756

Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+++L L      V       I DV F   +I+ ++ K+L+ ++D  ++++ SGI  +  
Sbjct: 757 ARKQLALGGGGSQVAQSQDETIGDVTFSGQVINGLNPKDLRGLLDEAKQRMGSGIAAICA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E KA+    VT+DL DR+NAVDL R   +VLGG GGGGRP MAQ GGP+G KA+ A+
Sbjct: 817 VN-EGKAAFAAAVTDDLTDRYNAVDLVRAGVEVLGGKGGGGRPDMAQGGGPDGLKAEAAL 875

Query: 890 AGV 892
             V
Sbjct: 876 NAV 878


>gi|119383350|ref|YP_914406.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|205830170|sp|A1AZL6|SYA_PARDP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119373117|gb|ABL68710.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222]
          Length = 885

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/907 (50%), Positives = 596/907 (65%), Gaps = 37/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ +R+TFL +F++NGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNDVRSTFLNYFERNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLTK+F +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDGAIPFAWELLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDKLLVTVYHTDDEAADIWKKVAGLSDDRIIRIPTSDNFWQMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+ E+G+R+IEIWNLVFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQNEQFEDGTMRALDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRGLIEASAHATSADPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  EMG+AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVREMGAAYPELGRAQALIEETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G+ AFKLYDT+G PLD+ QD L  +G A +D   F+
Sbjct: 361 QTLDRGLRLLDDELAKLPEGANLPGEAAFKLYDTYGFPLDLTQDALREKGRA-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + E++GAT+F+GYD                  
Sbjct: 420 SAMAEQKAKARAAWAGSGETKDAAIWFDIAEEHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
              +++ G    V A+VQ G  VEEA  GQ+V++V +QTPFY EAGGQ+GDTG    +  
Sbjct: 462 --TEISEGQ---VLALVQDGAAVEEAGEGQQVQIVVNQTPFYGEAGGQVGDTGLIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD  KK  G+F+H A V  G ++      L++D+  R  +  NHSATHLLH AL  
Sbjct: 517 AARVTDT-KKTGGVFIHIAEVTLGTIQRGQGAQLSVDHDRRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +T  EL  +E  VND I QN PV TRIM  +DA
Sbjct: 576 ALGEHVAQRGSLNAPDRLRFDFSHAKAMTPEELAQVEREVNDFIRQNSPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+       +   G  +S  LCGGTHV+ TG+I +  + S
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGELPGSGKGTGGQTYSLELCGGTHVARTGDIGMFALTS 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E++  AGIRRIEA+TGQ A   L   D +L  +A  +K   G+VV +V  + +E + L  
Sbjct: 696 ETASAAGIRRIEALTGQAAMDELRRVDGELNEIAGIVKAQAGDVVSKVRALADERKALAN 755

Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ K QL +   S  K  ++N    ++  +  V  KEL  ++D ++ ++ SG ++++ 
Sbjct: 756 EVAQLKRQLAMGGGSEDKPREINGIKLIARRVEGVSGKELGPLVDEMKSRLGSGAVVVLA 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + KA+V   VT DL  R +AV+L + +   LGG GGGGRP  AQ G P+   AD AI
Sbjct: 816 -EADGKATVAAGVTPDLTGRISAVELVQTATAALGGKGGGGRPDRAQGGAPSLAAADSAI 874

Query: 890 AGVASFL 896
           + V + +
Sbjct: 875 SAVETLI 881


>gi|149915205|ref|ZP_01903733.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149810926|gb|EDM70765.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 887

 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/912 (49%), Positives = 595/912 (65%), Gaps = 41/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF+KN H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNDIRSTFLNFFEKNDHQIVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GL  ++IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAADIWKKYAGLPEERIIRIATDDNFWSMGATGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS EE G+R+IEIWNLVFMQ E+     +  L   SIDTGMGLER+  +LQ 
Sbjct: 181 PHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTQRDLDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS  +T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLLRALIEASANITDGAPDGPGNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +P+M  L+P+L T+MG AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGAADPVMHRLVPSLVTQMGQAYPELGRAQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L  D  L G+ AFKLYDT G PLD+ QD L  +G + +D+  F+
Sbjct: 361 QTLDRGLRLLDDELDKLASDAPLPGEAAFKLYDTFGFPLDLTQDALREKGRS-VDVAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IW+ + E  G T F+GYD  R               
Sbjct: 420 EAMSEQKAKARAAWSGSGEAADATIWYDIAEDKGTTDFLGYDTER--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G+ +E A  G++V++V +QTPFYAE+GGQ+GDTG    +G 
Sbjct: 465 --------AEGQIMALVRDGQRIEAASQGEEVQIVLNQTPFYAESGGQVGDTGVVRTEGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K A G+F+H A V  G +    +  L +D+  R  +  NHSA HLLH AL  
Sbjct: 517 AARITDTRKVA-GVFLHVAEVTEGRIVAGEAAQLEVDHTRRTAIRANHSAMHLLHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +++ EL+ +E +VN  I QN  V TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHAKALSAEELERVEADVNGFIRQNASVDTRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+       +  DG  +S  LCGGTHV  TG+I +  +  
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGKLDGSGKGSDGRTYSIELCGGTHVRQTGDIGVFVVTG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           + +  AG+RRIEA+TG+ AR +L  Q  ++ +LA+ LK    +VV RV+ + +E ++L  
Sbjct: 696 DQASSAGVRRIEALTGEAARQYLSAQAHRVDALAAELKARPDDVVTRVKALMDERKQLAN 755

Query: 771 QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L +       +     +I  V F++ ++  V  K+L +++D  + ++ SG +
Sbjct: 756 EVAQLRRELAMAGGAGQGDGPEMREIGGVPFLAQVLRGVSGKDLPAIIDEHKARMGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L+    + KA+V   VT+DL  R +AVDL R +  VLGG GGGGRP MAQ GGP+   A
Sbjct: 816 LLIA-DADGKAAVAAGVTQDLTGRVSAVDLVRAAVPVLGGKGGGGRPDMAQGGGPDAGNA 874

Query: 886 DQAIAGVASFLK 897
           + AI      L+
Sbjct: 875 EAAIKAAEQILE 886


>gi|85708967|ref|ZP_01040033.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85690501|gb|EAQ30504.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 887

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/910 (49%), Positives = 606/910 (66%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+FF    H  + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MTSTNDIRRSFLDFFASEDHVEVQSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPGPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILNAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LW+KISGL  ++IIRI T DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 APEKLTATVYHTDDEAFDLWRKISGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG PGS  E+G+R+IEIWNLVFMQF+Q     R  LP  SIDTGMGLER+A V+Q 
Sbjct: 181 EHIPGGPPGSPDEDGDRFIEIWNLVFMQFDQAADGTRRDLPSPSIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +T +   G N  +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASENLTEVPASGENTASHRVIADHLRSTSFLMADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L+PAL +EMG AYP L + + LIEE L  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVSEMGQAYPGLQRGQSLIEEVLLREETQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+GL LLD     + +   L+G+ AFKLYDT+G P D+ +D L ARG++ +D   F+
Sbjct: 361 KTLDKGLKLLDEATGSMSEGGELDGETAFKLYDTYGFPYDLTEDALRARGIS-VDRGGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  Q++ ARA   G G   +++IWF + E+ GAT+F GY                   
Sbjct: 420 EAMARQKAAARAAWKGSGEAASDEIWFDIAEREGATEFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538
                T+G  ++V A+V+ G  V+ A +G +V V+ +QTPFY E+GGQ GDTG  +   G
Sbjct: 461 ---STTSGEGTVV-ALVKDGAEVDSASAGDEVVVLTNQTPFYGESGGQTGDTGTISTPTG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   +TD  K    +  H A +  G ++   ++ L +D + R Q+  NHSATHL+H AL 
Sbjct: 517 LAADVTDTSKPLGRLHAHQARITAGKVKVGDNVQLDVDAERRTQIRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS ++ + LRFD +H KP+++ ++ +IED VN  I  N PV TR+M+ +D
Sbjct: 577 NQLGDHVTQKGSLVSQERLRFDFSHPKPLSAEDIVAIEDEVNAEILANEPVGTRLMSPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+ +GA AL G KY D VRV+S+    G    +S  LCGGTHVS+TG+I L  IVSE ++
Sbjct: 637 AVEAGALALFGEKYGDEVRVLSMGRSGGSGRNYSVELCGGTHVSATGDIGLFRIVSEGAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEA+TG  AR+ L+ ++E LKS+A  ++ +   V  RV  + +E ++L  +L  
Sbjct: 697 SSGVRRIEALTGDAARNWLVAREEALKSVAGAIRATPEEVPARVAALLDERKRLEKELAE 756

Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           AK+ L L               ++A V F   ++  ++ KEL+ ++D  + ++ +G+  +
Sbjct: 757 AKKALALGGGGSGGGPAASADEQVAGVAFSGQVLEGLNPKELRPLLDEAKARLGTGVAAI 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V ++ + KAS+   VT+DL D+F+AVDL R   + LGG GGGGRP MAQ GGP+G+KA +
Sbjct: 817 VAVN-DGKASIAAAVTDDLTDKFSAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGSKAAE 875

Query: 888 AIAGVASFLK 897
           AIA V S L+
Sbjct: 876 AIASVKSVLE 885


>gi|146278407|ref|YP_001168566.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|205830189|sp|A4WV47|SYA_RHOS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145556648|gb|ABP71261.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 883

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/889 (50%), Positives = 585/889 (65%), Gaps = 37/889 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELLTRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK++GL  D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PREKLLVTVYHTDDEAASIWKKVAGLPDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS+ E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGTGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL+  L  L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLDRGLRLLEDELDRLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E++GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAERHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV  G     A  GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEKAEGQILAIVAGGVDTASATPGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV +K +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-RKGQGLFLHFAEVTEGEIRPGQGAALEVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HSK +++ EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSKALSAEELATVEAEVNQFIRSNGMVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+       +  DG  +S  LCGGTHV+  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGMDGQTYSLELCGGTHVARLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           +S+  AG+RRIEA+TG+ A +HL  Q ++L  +A+ LK S   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAHLNEQMQRLAEVAATLKASPAEMVDRVKALVEERRQLQN 755

Query: 772 -LIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   +R+  +     +  K I  V F++ I+  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAAAEAKDIGGVKFLAQIVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                KA++   VT DL DR +AV L + +A+ LGG GGGGRP MAQ+G
Sbjct: 816 -DTAGKAALAAGVTPDLTDRLSAVALVKAAAEALGGRGGGGRPDMAQAG 863


>gi|326387205|ref|ZP_08208815.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208386|gb|EGD59193.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 880

 Score =  847 bits (2187), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/890 (50%), Positives = 590/890 (66%), Gaps = 32/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGHE++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E      
Sbjct: 1   MTSTNEIRRSFLDYFGSNGHEVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAQPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+E+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EAF LW+KI+GLS D+IIRI T DNFW+M + GPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDEAFGLWQKIAGLSDDRIIRIATKDNFWAMGDDGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS+ E+G+R+IEIWNLVFMQFEQ   +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQFEQTAGEITGNLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDID F+ LI ASE +TG+K +  +  +HRVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 EHDNYDIDTFRALIAASENLTGVKADDAHRASHRVIADHLRSSSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+P+L TEMG+AYPEL +A+ LIEE L  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPSLITEMGAAYPELGRARALIEEVLEREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD     + +   L G+ AF+LYDT+G P D+ +D L ARG++ +D   F+
Sbjct: 361 QTLANGLKLLDEATDGMDEGAKLPGETAFRLYDTYGFPYDLTEDALRARGIS-VDRDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G     ++WF + E+ GAT+F GY                   
Sbjct: 420 AAMAQQKAAARAAWKGSGQTADSEVWFDIAERVGATEFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T G + +V A+V+ G+ V EA +G  V V+ +QTPFY E+GGQ GDTG   G G+
Sbjct: 461 ---TATTGEAQVV-ALVKDGKEVTEANAGDAVTVITNQTPFYGESGGQQGDTGTITGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L + D QK    +  H   VE G +R    + L ID   R  L  NHSATHLLH AL  
Sbjct: 517 VLAVGDTQKPLGKLHAHQGTVETGTIRVGDLVRLAIDTARRDALRANHSATHLLHQALRN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS +  + LRFD +    +++ ++  IE  VN  I  N PVVTR+M  +DA
Sbjct: 577 RLGQHVMQKGSLVAGERLRFDFSQPTALSAEDIAVIEAEVNAQIRGNSPVVTRLMTPDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA AL G KY D VRV+S+       +S  LCGGTHV + G+I +  IVSES++ +G
Sbjct: 637 IEAGAMALFGEKYGDEVRVLSMGGSSDATYSVELCGGTHVRALGDIGVFRIVSESAVSSG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           +RRIEA+TG+ AR  L+G+++ LK  A  L+ +   V  RV  + EE RKL  +L  AK+
Sbjct: 697 VRRIEALTGEAARQWLVGREDALKHTAGLLRTTPEEVETRVAALIEERRKLERELAEAKK 756

Query: 778 KLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            L L     S      +I  + F   ++  +D KEL+ ++D  ++++ SG+  +V ++ E
Sbjct: 757 ALALGGGGASPADADEEIGGIKFSGQVLEGLDPKELRGLLDQAKQRLGSGVAAVVAVN-E 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            KAS+   VT+DL+ + +AVDL R     LGG GGGGRP MAQ GGP+G+
Sbjct: 816 GKASIAAAVTDDLVGKVSAVDLVRAGVAALGGKGGGGRPDMAQGGGPDGS 865


>gi|154248002|ref|YP_001418960.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|205830288|sp|A7IMR0|SYA_XANP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154162087|gb|ABS69303.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 884

 Score =  847 bits (2187), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/894 (49%), Positives = 597/894 (66%), Gaps = 34/894 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++F+++F K GHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSSFIDYFVKEGHEAVASSPLVPQNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+T+ F+L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTRTFEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL +TV+ EDEEA+ LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIFFD  
Sbjct: 121 PRDRLVVTVFSEDEEAYGLWKKIAGLSDDKIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      ++G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER++ VLQ 
Sbjct: 181 PNVPGGPPGSPDQDGDRFIEIWNLVFMQFEQLPGGERLALPRPSIDTGMGLERVSAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DL + LI    ++T +  +G    +HRVI DHLR+S FL ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDLMRALIAEVAELTSVNPDGPQKASHRVIADHLRASVFLTADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+P L  EMG AYPE+++A+ L EETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVPVLVREMGRAYPEIVRAESLAEETLLLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +L+   + L       G+VAFKLYDT+G PLD+ QD L ARG++ +D  +F+
Sbjct: 361 RTLERGLSILEEESTGLTSGGQFPGEVAFKLYDTYGFPLDLTQDALRARGIS-VDTTAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++ ARA   G G   T+ +WFS++++ GAT+F+GY+                  
Sbjct: 420 AAMARQKAEARASWAGSGEAATDTLWFSVRDEVGATEFLGYE------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                T     +V A+V+ G +V+   +G+K  V+ +QTPFYAE+GGQ+GD G   G+ G
Sbjct: 462 -----TEKAEGVVAALVRDGAVVDSLAAGEKGLVILNQTPFYAESGGQVGDIGRVSGEGG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  Q+   QKK   +FVH   VE G L+   +LVL +D+  R  +  NHSATHLLH AL 
Sbjct: 517 VAAQVVATQKKLGDLFVHEVKVETGTLKRGTALVLEVDHARRAAVRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H KP++  EL  +E   N  + +N PV TRIM  +D
Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPLSGGELAEVETIANRFVLRNEPVETRIMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI SGA AL G KY D VRVVS+  +D  G  +S  LCGGTHV  TG+I L+ ++SES++
Sbjct: 637 AITSGARALFGEKYGDEVRVVSMGTDDGNGAPYSVELCGGTHVKRTGDIGLISVLSESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--WEEYRKLQLIH 774
            +G+RRIEA+T   AR HL      L   A+ LK     V  RV  +       + +L  
Sbjct: 697 ASGVRRIEALTADAARRHLNAASAALAGTAAVLKAPVAEVEARVATLVEERRRLERELAE 756

Query: 775 AKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A++KL +         +   + D+  ++  +  ++ K+LK ++D  +K+I SG++ +VG+
Sbjct: 757 ARKKLAMGGGGEASGDAVRTVGDIKLLARRVEGIEIKDLKGLVDEGKKQIGSGVVAIVGV 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + + KA +++ VT DL+ RF+AV L R+ ++ LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 TSDGKAGIVVGVTADLIARFDAVALVRVGSEALGGKGGGGRPDMAQAGGPDGAK 870


>gi|94498454|ref|ZP_01305011.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94422102|gb|EAT07146.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 884

 Score =  847 bits (2187), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/904 (49%), Positives = 601/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y+ 
Sbjct: 1   MTSTNDIRRSFLDYFGGNGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PADRLTATVYHTDDEAFDLWKKIAGLPEERIIRIATKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ+  +    LP+ SIDTGMGLER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPRPSIDTGMGLERVAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYD D FK LI  S  ++    +G +  +HRVI DHLRS+ FLIADG+LPANEGRGY
Sbjct: 241 VTDNYDTDTFKALIAESGALSRTATDGAHKASHRVIADHLRSTGFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+ +L +EMG AYPEL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMYRLVSSLVSEMGGAYPELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+ GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL  +D   F+
Sbjct: 361 KTLENGLKLLDEATGDLAEGGTLAGETAFKLYDTYGFPYDLTEDALRSRGLT-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY   +G              
Sbjct: 420 AAMAEQKAAARAAWKGSGEKASDEIWFDIAEKAGNTEFIGYATTQG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AIV+ G   + A +G  V +V +QTPFY E+GGQ+GD G     G 
Sbjct: 466 ---------EGEVLAIVKDGVNFDSAAAGDTVTIVTNQTPFYGESGGQMGDAGRITTQGG 516

Query: 540 RLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + + D   K  G +  HHA +E G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 FVALVDDTAKPLGRVHAHHATIEAGSIKVGDTVHLSVDVDRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS +  D LRFD +H + +T A++ +IE +VN  +  N  V TR+M  +D
Sbjct: 577 KELGAHVTQKGSLVAADRLRFDFSHPEALTHAQIAAIEADVNAQVRHNEEVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A+GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I L  IVSES++ +
Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRGDDAHYSVELCGGTHVRATGDIALFKIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG+ AR  L+ +D+KL+  A+ LK +  +V  R+  + E+ RKL  +L  AK
Sbjct: 697 GVRRIEALTGEAARLWLVERDDKLRQTAAALKTTPEDVPTRIAALVEQSRKLERELAEAK 756

Query: 777 RKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + L L      +     KI +++F+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGSAAQTAGPEKIGNIDFLGQVIEGLDPKELRGIVDQNKATLGSGVSAVLAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +AS+ + VT+DL  + +AVDL R   + LGG GGGGRP MAQ GGP+G+KA  A+  V
Sbjct: 816 DGRASIAVGVTDDLKGQISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKATAALDAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KTAL 879


>gi|307292727|ref|ZP_07572573.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306880793|gb|EFN12009.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 884

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/904 (49%), Positives = 601/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD D FK LI+ S  +T    +G +  +HRVI DHLRS+SFLIADG+LPANEGRGY
Sbjct: 241 VHNNYDTDTFKALIEESGALTKTATDGEHQASHRVIADHLRSTSFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+P+L +EMG AY EL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGSKEPLMHRLVPSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL G+D   F+
Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY                   
Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538
                T G   +V AIV+ G   + A +G+ V +V +QTPFY E+GGQ+GD G  +   G
Sbjct: 461 ---SSTQGEGEVV-AIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   + D  K    +  H A +  G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSIKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H + +T +++ +IE +VN+ +  N  V TR+M  +D
Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHSQIAAIEADVNEQVRHNEAVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I +  I+SES++ +
Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG+ AR  L  ++++L+  A+ LK +   V  R+  + E+ R+L  +L  AK
Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRRLERELAEAK 756

Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + L L     +      K+  VNF+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGGSAQAAGPEKVGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAVLAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           E +A++ + VT+DL+   +AVDL R   + LGG GGGGRP MAQ GGP G+KA+ AI  V
Sbjct: 816 EGRATIAVGVTDDLVGTISAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGDKAEAAIEAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KAAL 879


>gi|310815943|ref|YP_003963907.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754678|gb|ADO42607.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 868

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/867 (49%), Positives = 568/867 (65%), Gaps = 38/867 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL F+ +NGH ++PSS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 24  MTSLADIRSTFLNFYARNGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNTFTGVETRDYVR 83

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTK+F +
Sbjct: 84  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKESAIPFAWELLTKDFGI 143

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL +TVY  D+EA  +WKK++GLS D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 144 NKDRLLVTVYHTDDEAANIWKKVAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 203

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+  +LQ 
Sbjct: 204 DHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQFEDGSRTGLPKPSIDTGMGLERIGALLQG 263

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 264 KHDNYDTDLMRALIEASAHATSNDPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 323

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  EMG+AYPEL +A+ LIEETLR+E+ RF 
Sbjct: 324 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGAAYPELNRAQALIEETLRAEETRFK 383

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L  D  L G  AFKLYDT+G PLD+ QD L  +    +D   F 
Sbjct: 384 QTLDRGLRLLDDELGQLPGDAALPGATAFKLYDTYGFPLDLTQDALREKNRT-VDTDGFT 442

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF L E+ G T+F+GYD L+               
Sbjct: 443 AAMNEQKAKARAAWAGSGEQADASVWFDLVEQNGTTEFLGYDTLQAE------------- 489

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +   +   G ++E A  G +V+VV +QTPFYAE+GGQ+GD G    D  
Sbjct: 490 ---------GQVTAIVAPAGALMERAEIGAQVQVVLNQTPFYAESGGQVGDAGLLRTDTG 540

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD +K A G F H   V  G +      VLT+D   R Q++ NHSATHL++ AL  
Sbjct: 541 VIEVTDTKKHA-GAFAHIGTVREGFVAVGQGAVLTVDATRRGQIAANHSATHLVNEALRA 599

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +++ E+  ++ +VN  I QN PV TR+M  ++A
Sbjct: 600 ALGDHVAQRGSLNAPDRLRFDFSHNKALSADEIAKVQADVNAYIRQNTPVETRVMTPDEA 659

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+   DG         +S  LCGGTHV+  GEI    ++S
Sbjct: 660 RDLGAQALFGEKYGDEVRVVSMGRLDGSNKGVDKNTYSLELCGGTHVTRLGEIGAFVLLS 719

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RR+EA+TGQ A  HL  Q+  L S+AS LK S  +VV RV  + +E + L  
Sbjct: 720 DSASSAGVRRVEALTGQAALDHLAAQEAALISVASLLKTSAADVVERVRALVDERKALSN 779

Query: 771 QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R L +      D++      V+  + ++S V  K+L +++D+ + ++ SG+++L
Sbjct: 780 EVAQLRRDLAMAGGAKNDVAIRDAGGVSLQAQLLSGVTGKDLPALVDSFKSELGSGVVLL 839

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVD 854
           +    + KA+V   VT DL D+ +AV+
Sbjct: 840 IA-DVDGKAAVAAGVTADLTDKVSAVE 865


>gi|148553432|ref|YP_001261014.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|205830213|sp|A5V3L0|SYA_SPHWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148498622|gb|ABQ66876.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 887

 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/896 (50%), Positives = 596/896 (66%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+ F K GHEL+PS+ L+P NDPTLMF N+GMVPFKN+FTG EK  Y  
Sbjct: 1   MTSTNDIRRSFLDHFAKEGHELVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI LAW L+T  + +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISLAWSLITGTWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TV+  D+EAF LWKKI G+   +IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PADRLTVTVFHTDDEAFDLWKKI-GMPDSRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             IPGG PGS +E G+R++EIWNLVFMQ+EQ +K+ R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 180 AHIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVDKETRIDLPRPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T     G+   +HRVI DHLR+S FL+ADG+LPANEGRGY
Sbjct: 240 VHDNYDTDTFKALIAASGELTRTATNGDFKASHRVIADHLRASGFLVADGVLPANEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+P+L  EMG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAAEPLMHRLVPSLVAEMGAAYPELVRAQPLIEETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD     +   ++L G VAFKLYDT G P D+ +D L A+ L G+D   F+
Sbjct: 360 QTLANGLRLLDEATGAMKPGDVLPGAVAFKLYDTFGFPYDLTEDALRAQDL-GVDRSGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++ ARA   G G   ++++WF + E++G T+F GY    G      D ++L   
Sbjct: 419 AAMAEQKAAARAAWKGSGEKASDEVWFDIAEEFGGTEFTGYVSEEG------DGQLL--- 469

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                         AIV+ G+ V EA +G +V +V +QTPFY E+GGQ+GD G   G DG
Sbjct: 470 --------------AIVKDGQRVAEAKAGDEVVLVTNQTPFYGESGGQMGDAGRITGDDG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + + D  K    +  H   V  G +RT  +L L +D   R ++  NHSATHLLH AL 
Sbjct: 516 LEIAVEDTAKPLGRVHAHRGTVVSGSVRTGDALHLVVDGDRRTRIRANHSATHLLHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LGSHV+Q GS +  D  RFD +H K +T  ++ +IE  VN  I +N  V TR+M  + 
Sbjct: 576 NRLGSHVTQKGSLVAADRFRFDFSHPKALTPEDIAAIEAEVNRHIRENDEVTTRLMTPDA 635

Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSES 714
           AI +GA AL G KY D VRV+S+     D G   +S  LCGGTHVS+ G+I L  I+SES
Sbjct: 636 AIEAGAMALFGEKYGDEVRVLSMGKAGRDLGAKSYSVELCGGTHVSALGDIALFKIISES 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ +G+RRIEA+TG+ AR  L  +DEKLK  A+ LK +  +V  R+  + EE RKL  +L
Sbjct: 696 AVSSGVRRIEALTGEAARQWLTQRDEKLKEAAAALKTAPDDVPARIAVLVEERRKLEREL 755

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AK+ L L      E      +A V F+  ++  +D K L+ ++D  +  + SG+ ++V
Sbjct: 756 AEAKKALALGGGSKAEAAGPEDVAGVKFLPQVVDGLDPKGLRGLVDDAKASLGSGVSVIV 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++ + +ASV   VT DL+DR +AVDL + +   LGG GGGGRP MAQ GGP+G+K
Sbjct: 816 AVN-DGRASVAAGVTADLVDRISAVDLVKAAVAALGGQGGGGRPDMAQGGGPDGDK 870


>gi|162147971|ref|YP_001602432.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542589|ref|YP_002274818.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786548|emb|CAP56130.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530266|gb|ACI50203.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 881

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/888 (48%), Positives = 582/888 (65%), Gaps = 33/888 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS  + IR  FL++F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 1   MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW L+T+ F L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL  TVY +DEEA  LW+K++GL  ++IIRI T DNFW M +TGPCGPCSEIFFD  
Sbjct: 121 PRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFWRMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R++EIWNLVFMQF +     R  LP+ SIDTGMGLER A ++Q 
Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G    +HRV+ DHLRS+SFLIADG+LP+ +GRGY
Sbjct: 241 KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G  E +   L+PAL  +MG+AYPEL+QA+ LI ET+R E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHMMGTRETVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISF 418
             LDRGL LL    + LG  + L GDVAFKLYDT G PLD+ QD L  RG +  +D+  F
Sbjct: 361 AMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDLTQDAL--RGSSHDVDVTGF 418

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++A++ QR RARA   G G   TE +WF  ++++GA++F+GY                  
Sbjct: 419 DRAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGY------------------ 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                 T    + ++AIV  G  V EA +G ++ ++ +QTPFY E+GGQ+GDTG     G
Sbjct: 461 -----ATEQADAEIQAIVTDGRSVTEAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ +TD QK+   + VH+  V  G +R   ++  T+D+  R  +  +HSATHLLH AL 
Sbjct: 516 LRIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAIRAHHSATHLLHEALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFD++  +P+T  E+  +E  VN  I +N PVVTR M++E+
Sbjct: 576 RRLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEE 635

Query: 659 AIASGAAALLGTKYNDRVRVV--SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+A GA AL G KY D VRVV      +D    S  LCGGTHV+ TG+I L  I SE+ +
Sbjct: 636 AVAQGAMALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AGIRRIEA+TG+ A    +  +++L  +A+ L+VS      R+  I +E + +  Q+  
Sbjct: 696 SAGIRRIEAVTGKSAEQAAVATEQRLGQMAAMLRVSAAEAPERLAVILDERKVMERQISD 755

Query: 775 AKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +RKL     D      I  + F++  + ++ ++ELK + D+L++++ SG++ LV  + E
Sbjct: 756 LQRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQQVGSGVVALVS-TAE 814

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            K SV++ VT DL DR +AV+L RL++  +GG GGGGR  MAQ+GGP+
Sbjct: 815 GKGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPD 862


>gi|254418413|ref|ZP_05032137.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196184590|gb|EDX79566.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 882

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/901 (47%), Positives = 571/901 (63%), Gaps = 34/901 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR T+L FF  +GHE + S+ L+P NDP+L+F N+GMVPFK+ FTG  KP Y  
Sbjct: 1   MPSLNEIRATYLNFFAADGHEKVHSAPLVPQNDPSLLFVNAGMVPFKDYFTGASKPPYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI  AW L+T+EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIDRAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY +D+EA  +WKK++G   DKIIRI  +DNFW+M ++GPCGPC+EIF+D G
Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDSGPCGPCTEIFWDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+RY+EIWN VFMQFE++N Q    LPK S+DTGMGLERM TVLQ 
Sbjct: 181 DKIAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDQIVRNLPKPSVDTGMGLERMTTVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLFK LI ASE  T  K +G    +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 VHSVFETDLFKTLIAASEDATSTKSDGERAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL +A+  IE+TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVAQMGDAYPELARAQPFIEDTLKQEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ L D  +      ++L+G  AF L DT+G PLD+ QD    RG + +++  F 
Sbjct: 361 TTLGRGMALFDTAVQGFKPGDMLDGQTAFTLSDTYGFPLDLTQDEARRRGFS-VNVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR R+R H  G G       W +++++ G T F GYD + G              
Sbjct: 420 SAMAEQRQRSREHWKGSGQTANTNEWLAIRDRMGPTVFTGYDTIEG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V A++  G  VE A +G  VE++FD TPFYAE+GGQ GD G     G 
Sbjct: 466 ---------SGEVLALMNGGAPVETAEAGDIVEILFDNTPFYAESGGQTGDQGTLEWPGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ DV+K A  + V  A +  G L     +   +D   R     NHSA HLLH AL  
Sbjct: 517 EAEVLDVKKHAGDLHVLSAQITAGTLEIGARVAQLVDADKRMTTRANHSAAHLLHTALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V+Q G  +  +  RFD +H  P+T  EL +IE  VN +I QN+P  TR+M  ++A
Sbjct: 577 VLGPAVAQKGQLVDSERARFDFSHGAPVTEDELAAIEAEVNAVIRQNVPAETRLMAPQEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++      D   +S  LCGGTHV+ TG+I L  +V E+ +
Sbjct: 637 IEAGAIALFGEKYGDEVRVLTLGRSLVSDNAPYSVELCGGTHVARTGDIGLFKVVQETGV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR +L  Q +  ++LA   K+   +V GRVE +    + L+   A+
Sbjct: 697 AAGVRRIEALTGEAARLYLEAQAKVTRNLARDFKIQTQDVPGRVEALQGSVKTLEKQVAE 756

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K QL +   S       +I  +  M+ ++  VD K L+ V +  +K++ +G++ L+G++
Sbjct: 757 LKKQLALGGGSGAASAPEEIGGIKLMARVLDGVDGKGLRGVAEDFRKQVGTGVVALIGVT 816

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E KA+V + VT DL DR NA DLAR +   +GG G GG+P  AQ G P+G+KA+  +A 
Sbjct: 817 -EGKAAVTVAVTSDLTDRVNAADLARTAVIAMGGQGAGGKPDFAQGGAPDGSKAEAGLAA 875

Query: 892 V 892
           V
Sbjct: 876 V 876


>gi|87199300|ref|YP_496557.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
 gi|123489936|sp|Q2G8V0|SYA_NOVAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|87134981|gb|ABD25723.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
          Length = 881

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/891 (49%), Positives = 597/891 (67%), Gaps = 33/891 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FLE+F  NGH+++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E      
Sbjct: 1   MTSTNEIRRSFLEYFGSNGHDVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAVPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+E+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY  D+EAF+LWKKI+GL  D+IIRI T DNFW+M + GPCGPCSEIFFD G
Sbjct: 121 PKDKLLATVYHTDDEAFELWKKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGEITGSLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYD D FK LI ASE +T ++ EG++  +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 EHDNYDTDTFKALIAASESLTSVRAEGDHKASHRVIADHLRSTSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  EMG+AYPEL +A+ LIEETL  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVAEMGAAYPELGRAQPLIEETLLREEVQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  G+ LLD   + LG+ + L GD AFKLYDT+G P D+ +D L ARG+A +D   F+
Sbjct: 361 RTLSNGIKLLDEATATLGEGDKLPGDTAFKLYDTYGFPYDLTEDALRARGIA-VDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G     ++WF + E+ GAT+F GY                   
Sbjct: 420 AAMAQQKAAARAAWKGSGQAADSEVWFDIAERVGATEFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                T G + +V A+V+ G+ V+ A++G  V V+ +QTPFY E+GGQ GD G    GDG
Sbjct: 461 ---TATTGEAQVV-ALVKDGKEVDSAMAGDDVAVIVNQTPFYGESGGQTGDAGTITGGDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + L ++D  K    +  H+A V+ G ++    + L ID   R  +  NHSATHLLH AL 
Sbjct: 517 LVLAVSDTAKPLGRLHAHNAKVQSGSVKVGDVVRLDIDVARRDAIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS +  D LRFD +H   +++ ++ +IE  VN  I  N  V TR+M+ ED
Sbjct: 577 HRLGAHVTQKGSLVAADRLRFDFSHPTALSAEDIAAIEAEVNAEIRANEVVTTRLMSPED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+       +S  LCGGTHV + G+I +  IVSES++ +
Sbjct: 637 AIEAGAMALFGEKYGDEVRVLSMGRVADKHYSVELCGGTHVRALGDIGVFRIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG+ AR   + +++ LK+ AS L+ +  +V  RV  + +E +KL  +L  AK
Sbjct: 697 GVRRIEALTGEGARQWFVAREDALKNTASILRTTPEDVEARVTALMDERKKLERELAEAK 756

Query: 777 RKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + L L             +  V F   ++  +D K+L+ ++D  ++++ SG+ ++V ++ 
Sbjct: 757 KALALGGGSAKAENADEDVNGVKFSGQVLEGLDPKDLRGLLDQAKQRLGSGVAVIVAVN- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           E KAS+   VT+DL  + +AVDL R   + LGG GGGGRP MAQ GGP G+
Sbjct: 816 EGKASIAAAVTDDLAGKVSAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGS 866


>gi|5834358|gb|AAD53924.1|AF179611_8 alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 888

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/913 (49%), Positives = 589/913 (64%), Gaps = 41/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F   F+K        + L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 1   MITTNEIRRSFSRIFRKEWPSDSTIAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             IPG    + E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ  
Sbjct: 181 PEIPGASGLADEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGYV
Sbjct: 241 HDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF +
Sbjct: 301 LRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFRQ 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL  GL +L     HL   + L G VAF+LYDT+G P D+  D L AR L  +D   F+ 
Sbjct: 361 TLANGLKILKDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFDA 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +G               
Sbjct: 420 AMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG--------------- 464

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-I 539
                   S  + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G+  +
Sbjct: 465 --------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNNDL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL  
Sbjct: 517 KMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALRD 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M  E A
Sbjct: 577 QLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPESA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + +GA AL G KY + VRV+S+     +  +    S  LCGGTHVS+ G+I L +IVSE+
Sbjct: 637 VEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK Q   
Sbjct: 697 AVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKCQRSL 756

Query: 775 AKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           A +K  L   + +C          K+   +F+  +I  ++ K L  ++D  +K I+SG+I
Sbjct: 757 ADQK-ALAFANANCGQGGNNAAPDKLGAYHFIGQVIEGLEPKALLGLIDENKKIIESGVI 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L+ ++ E +ASV I V++ L  + +AVDL R + + LGG GGGGRP MAQ GGPNGN+A
Sbjct: 816 ALITVN-EGRASVAIGVSDSLKGKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNEA 874

Query: 886 DQAIAGVASFLKK 898
            QA+  V + L+K
Sbjct: 875 AQALEAVKALLEK 887


>gi|329849339|ref|ZP_08264185.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328841250|gb|EGF90820.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 878

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/903 (49%), Positives = 587/903 (65%), Gaps = 32/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR TFL++F +N HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNQIRQTFLDYFARNDHEVVASSSLVPQNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW LLTK++ L
Sbjct: 61  ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEHAWTLLTKDYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  R+  TVY +D+EAF+LWKKI+GL   +I RI  +DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 NPDRMMATVYIDDDEAFELWKKIAGLPESRIARIAGSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PG+ EE G+R++EIWNLVFMQF+QQ    R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQFDQQPDGTRVNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK+LI AS + TG+  EG+++ +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDIDLFKNLISASVEATGVAAEGDSLPSHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  L P L  EMG  Y EL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGSQEPLLHRLAPTLVAEMGGHYGELKRAEAAIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LLD  +  L   ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++  F 
Sbjct: 361 RTLGRGMTLLDEAVRDLKSGDMLEGEVAFKLYDTYGFPLDLTQDAVRAKGLS-VNVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++E Q+ R R    G G   T   WF++KE  GA++F GYD L                
Sbjct: 420 ASMEAQKQRGRDAWTGSGEKATAAEWFAIKEAIGASEFTGYDHLSAQGH----------- 468

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V+AIV  GE +EEA++G  V +VF+++PFY E GGQ GD G       
Sbjct: 469 ------------VQAIVLDGETIEEALTGDTVSMVFEKSPFYPEGGGQAGDVGTVDFLHG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  + D Q++A  + VH   +  G ++      L +D   R+    NHSA HL+H AL  
Sbjct: 517 KGNVLDTQRQAGDLIVHRIEITEGRVKVGDKAELHVDAGKRKTTRSNHSAAHLVHAALRH 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T  EL  IE  VN ++ QN    T++M  E A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGGPLTVDELARIEAEVNAVVLQNAAAATKLMTPEAA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-EYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++ +  DG G +S  LCGGTHV+ TG+I L  IVSES I 
Sbjct: 637 IEAGAIALFGEKYGDEVRVLALGQALDGQGDYSVELCGGTHVARTGDIALFKIVSESGIA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AG+RRIEA+TG+ AR  L+ Q    +SLA   KV    V  RVE +  E ++L  +L  A
Sbjct: 697 AGVRRIEAVTGEAARQFLLEQAGVARSLADQFKVPVSQVEARVEALVAERKRLEKELAEA 756

Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           KR L +     +    +I     ++ ++  V  K+L+ + +  +K++ SGI+ LVG   +
Sbjct: 757 KRALAVGGGGAASGPEEINGTKLIARVLEGVGGKDLRPLAEDFRKQVGSGIVALVG-KLD 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA+V + VT DL  R+NA +LA+ +   +GG G GG+P  AQ G P+ +KAD  +  V 
Sbjct: 816 GKAAVTVTVTADLTGRYNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDDSKADAGLEAVK 875

Query: 894 SFL 896
           + +
Sbjct: 876 ALI 878


>gi|103487205|ref|YP_616766.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|123253182|sp|Q1GSD9|SYA_SPHAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|98977282|gb|ABF53433.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
          Length = 884

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/888 (50%), Positives = 604/888 (68%), Gaps = 37/888 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F   GH + PS+ L+P NDPTLMF N+GMVPFKN+FTG EK  Y  
Sbjct: 1   MTSTNDIRRSFLDYFGGAGHHIEPSAPLVPYNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW L+T+ + L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLITQTWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 APEKLTATVYHTDDEAFDLWKKIAGLPDERIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS EE G+R++EIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHVRGGPPGSPEEDGDRFVEIWNLVFMQYEQLPGGERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI+AS ++TG++ +  +  +HRVI DHLR+SSFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIEASVELTGVRADEAHRASHRVIADHLRASSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  LLP+L  EMG+AYPELI+A+ LI ETL  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLLPSLTAEMGAAYPELIRAQPLIAETLEREEVKFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD   + +G+ + L GDVAFKLYDT+G P D+ +D L ++G++ +D   F+
Sbjct: 361 QTLDKGLRLLDEATADMGRGDTLVGDVAFKLYDTYGFPYDLTEDALRSKGIS-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G   +E+IWF L E +G+T+F GY                   
Sbjct: 420 AAMAQQKAAARAAWKGSGQKASEEIWFDLAETHGSTEFTGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                T+G ++++ A+V+ G+ VEEA +G +V V+ +QTPFY E+GGQ+GD G  A  +G
Sbjct: 461 ---TSTSGEATVI-ALVRDGQPVEEARAGDEVIVLTNQTPFYGESGGQMGDAGMIATLEG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  ++D  K    +  H A +E G L+   ++ LT+D + R ++  NHSATHLLH AL 
Sbjct: 517 AKASVSDTGKPLGRLHTHQAKLEAGTLKVGDTVQLTVDAERRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D  RFD +H K +T+AE+  IE +VN  I  N PV TR+M  +D
Sbjct: 577 NRLGGHVTQKGSLVAADRFRFDFSHPKALTAAEIADIEADVNAQIRGNEPVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AIA+GA AL G KY D VRV+++   D   +S  LCGGTHV + G+I L  IVSES++ +
Sbjct: 637 AIAAGALALFGEKYGDEVRVLAMGKADDRNYSVELCGGTHVRALGDIALFKIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG+ AR  L G+DE LK+ A+ LK S   V  RV ++ E+ +K   +L  AK
Sbjct: 697 GVRRIEALTGEAARQWLNGRDEALKAAAAALKTSPDEVPARVAQLAEQLKKAERELADAK 756

Query: 777 RKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           + L               +  ++ DV F++ ++  +D KEL+  +D L+K++ SG+ MLV
Sbjct: 757 KALALGGSGGDGGAAAGPAVEQVGDVAFLAQVVDGLDPKELRGTVDGLKKQVGSGVAMLV 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            ++ + +ASV + VT+D     +AVDL + +   LGG GGGGRP MAQ
Sbjct: 817 AVN-DGRASVAVGVTDDKTGHHSAVDLVKAAVVALGGQGGGGRPDMAQ 863


>gi|326403001|ref|YP_004283082.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325049862|dbj|BAJ80200.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 878

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/901 (48%), Positives = 595/901 (66%), Gaps = 30/901 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TVY ED+EA  LWK+I+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQF ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS +V+    +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EP +  L+PAL  +MG A+PEL +A+ LI ETL+ E+++F 
Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL+  +  LG  E L G VAFKLYDT+G PLD+ +D L  +   G+D   F 
Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQ++RARA   G G   TE +W  L+++ G T+F+GY                   
Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYS------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + + A+V  G     A +GQ+V ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 462 -----TEESDASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD QKKA  +FVH+  +E G +    S+   +D+  R  +  +HSATHLLH AL  
Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD++  +P+T AEL+++E  VN  I +N  V TR+M  ++A
Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +  GA AL G KY D VRVVS+   D G   +S  LCGGTHV+ TG+I    I++ES + 
Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGKSAYSIELCGGTHVARTGDIGAFRILAESGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AGIRRIEA+TG+ A +      + L+  A+ LKV+   +  R+  + EE ++   Q+   
Sbjct: 697 AGIRRIEAVTGEAALAATEAAADLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +RKL          ++A + F +  + EV  ++LKS+ D++ K + SGI  LV  + E K
Sbjct: 757 QRKLATGGAASEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-EGK 815

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           AS+++ V+ DL DRFNAV L R +++ +GG GGGGRP MAQ+GGP+G KAD+A+A + + 
Sbjct: 816 ASIVVAVSPDLTDRFNAVTLVRAASEAVGGKGGGGRPDMAQAGGPDGGKADEALAAIRAS 875

Query: 896 L 896
           L
Sbjct: 876 L 876


>gi|332185154|ref|ZP_08386903.1| alanyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332014878|gb|EGI56934.1| alanyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 882

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/905 (49%), Positives = 597/905 (65%), Gaps = 34/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR  FL++F   GH+++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRGFLDYFGSQGHQIVPSAPLVPQNDPTLMFVNAGMVPFKNVFTGLETRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTK + +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKVWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL   KIIRI T DNFW+M E GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPDHKIIRIPTKDNFWAMGENGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQFEQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIYGGPPGSPEEDGDRFVEIWNLVFMQFEQEANEIVGELPKKSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T  K E     +HRVI DHLRS+ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASCELTHTKAEDGQKASHRVIADHLRSAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+PAL  EMG+AYPEL++A+ LIE TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPALVAEMGAAYPELVRAQPLIEATLKQEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD   + +     L G+ AFKLYDT+G P D+ +D L A+ L+ +D   F+
Sbjct: 361 QTLDKGLKLLDEATAGMAPGATLAGETAFKLYDTYGFPYDLTEDALRAQNLS-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+  ARA   G G+  ++ +WF + E+ G+T+F+GY                   
Sbjct: 420 AAMAEQKRAARAAWKGSGAKASDDVWFDIAEETGSTEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                ++     V A+V+ G  V+ A +G  V ++ +QTPFY E+GGQ+GD+G    D G
Sbjct: 461 ----ASDTGEGEVLALVKDGARVDSAGAGDTVSIIVNQTPFYGESGGQVGDSGTISSDTG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           ++  +TD  K+   +FVH+A ++ G ++   S+ L ID   R  +  NHSATHLLH AL 
Sbjct: 517 LKAVVTDTSKQLGRVFVHNAEIQEGGIKVGDSVKLAIDTTRRAAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + P+ LRFD +    +T+ ++  +E  VN+ +  N PVVTR+M  ++
Sbjct: 577 QRLGTHVAQKGSLVAPERLRFDFSQPVGMTADDIAEVEAKVNEQVRGNGPVVTRLMTPDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY D VRVVS+  +  G +S  LCGGTHV++ GEI +  IVSE ++ +
Sbjct: 637 AIEMGAMALFGEKYGDEVRVVSMGEDADGTYSLELCGGTHVNALGEIGVFKIVSEGAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+EA+TG+ AR++L  +D+ LK+ A+ LK +   V GR+  + EE R+L+   A+ K
Sbjct: 697 GVRRVEALTGEGARAYLSHRDDMLKAAAATLKTTPDEVPGRIAALVEERRRLERELAEAK 756

Query: 779 ------LQLNVEDLSCHKIADVNFMSHIISEVDSKELK-SVMDALQKKIQSGIIMLVGIS 831
                            +I DV F+  ++   ++K L+ +V DA Q+   SG+ ++V ++
Sbjct: 757 KALAMGGGAGGAAAGPEQIGDVAFIGQVLDGFEAKGLRGAVDDAKQRLGGSGVAVMVAVN 816

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + +ASV + VT+DL  + NAVDL R +   LGG GGGGRP MAQ GGP+G K  +A+  
Sbjct: 817 -DGRASVAVGVTDDLTAKHNAVDLLRKAVAALGGQGGGGRPDMAQGGGPDGTKGAEALQA 875

Query: 892 VASFL 896
           V   L
Sbjct: 876 VRDAL 880


>gi|84500806|ref|ZP_00999041.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
 gi|84390873|gb|EAQ03291.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
          Length = 892

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/903 (49%), Positives = 578/903 (64%), Gaps = 51/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F++ GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MQSLNDIRSTFLNYFKRQGHEIVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELVTKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EA  +WKK++GL  D+IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTADNFWQMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS EE G+R+IEIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 181 DKFWGGPPGSPEEDGDRFIEIWNLVFMQYEQFEDGTRRELDAQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T  + +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRALIEASAHQTSSEPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPLMHRLVPELVRQMGEAYPELRQAQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS L +D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLKLLDDELSGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF L +++GAT F+GYD                  
Sbjct: 420 SAMAEQKAKARAAWAGSGESADLSVWFDLADQHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+++ GE VEE  SG++  +V +QTPFY EAGGQ+GDTG       
Sbjct: 462 -----TETAEGQILALIRDGEQVEELKSGEQGWIVTNQTPFYGEAGGQVGDTGWI----R 512

Query: 540 RLQ-------ITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           RL+       +TD QK   G I+ H+  +++G  R   ++ L +D+  R  +  NHSATH
Sbjct: 513 RLENEDEIATVTDTQKMGAGRIYAHNVTIDQGSFRASDAVALEVDHGRRATIRANHSATH 572

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS   PD LRFD +HS  ++  EL  IE +VN  I QN PV T
Sbjct: 573 LLHEALREALGDHVAQRGSLNAPDRLRFDFSHSAALSPEELARIERDVNAFIRQNTPVET 632

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYE------DGGVHSSALCGGTHVSSTGEI 705
           RIM  +DA   GA AL G KY D VRVVS+  +       G  +S  LCGGTHV+ TG+I
Sbjct: 633 RIMTPDDARGLGAQALFGEKYGDEVRVVSMGQKATGKGAGGNTYSIELCGGTHVARTGDI 692

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               + SE++  AG+RRIEA+TG+ A + L G+D  L  +   LK +   VV RV+ + +
Sbjct: 693 GAFALTSETASSAGVRRIEALTGEAALAELRGRDTALAQIEGMLKATGPEVVSRVKAMMD 752

Query: 766 EYRKLQ--LIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           E R LQ  +   +R L ++            +I  V F++  +S V  K+L +++D  + 
Sbjct: 753 ERRALQNEVAQLRRDLAMSGGAGQGGGAETREINGVKFLAQSLSGVSGKDLPALIDQFKD 812

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +I SG ++L+  +   KA+V   VT DL DR +AVDL R +   LGG GGGGRP MAQ G
Sbjct: 813 QIGSGAVLLIADTG-GKAAVAAGVTPDLTDRLSAVDLVRAAVPELGGKGGGGRPDMAQGG 871

Query: 879 GPN 881
           G +
Sbjct: 872 GAD 874


>gi|209964228|ref|YP_002297143.1| alanyl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|209957694|gb|ACI98330.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
          Length = 898

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/897 (49%), Positives = 588/897 (65%), Gaps = 44/897 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y    
Sbjct: 5   TANEIRATFLDFFKKNGHAVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGNETRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKE+ L +
Sbjct: 65  TAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEYGLPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TV+  D+EA  LWKK++G+  D+IIRI T+DNFW M +TGPCGPCSEIFFD G  
Sbjct: 125 DRLCVTVFHTDDEAADLWKKVAGIGDDRIIRIPTSDNFWMMGDTGPCGPCSEIFFDHGPH 184

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMATVLQ 238
           I GG PGS+E+ G+R+IEIWNLVFMQ+EQ  K    ER  LPK SIDTGMGLER+A VLQ
Sbjct: 185 IAGGPPGSAEQDGDRFIEIWNLVFMQYEQFPKDGGHERVPLPKPSIDTGMGLERLAAVLQ 244

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NYD DL + LI AS   TG   EG + V+HRVI DHLR+ SFLIADG++P+NEGRG
Sbjct: 245 GVHDNYDTDLMRALILASADATGAPPEGAHAVSHRVIADHLRACSFLIADGVMPSNEGRG 304

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRIMRRAM +A +LG  +P+M  L+PAL  EMG  Y EL +A+ LI ETLR E+ +F
Sbjct: 305 YVLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGGHYTELQRAQPLITETLRLEETKF 364

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TLDRGL LLD     L   + L+G VAF LYDT+G PLD+ QD+L  R   G+D+  F
Sbjct: 365 KQTLDRGLRLLDEEEGRLAPGQALSGQVAFTLYDTYGFPLDLTQDVLRGR-QRGVDVDGF 423

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N A+EEQR +ARA   G G   TE++WF LK++ GAT+F+GYD                 
Sbjct: 424 NAAMEEQRRKARAAWAGSGEAATERVWFELKDEVGATEFLGYD----------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-G 536
                 T    + V A++   G  ++ A +GQ+V VV +QTPFY E+GGQ+GD+G     
Sbjct: 467 ------TEMAEAKVTALLDPAGTRLDRAAAGQEVIVVVNQTPFYGESGGQVGDSGVLFSA 520

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G  + + D QKK   ++ H   V RG +     + L +D   R  +  NHSATHLLH A
Sbjct: 521 GGAEVAVRDTQKKLGAVWAHIGAVTRGTIAVGDVVELRVDGARRADIRANHSATHLLHEA 580

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG HV+Q GS + P+ LRFD++   P+++ +++ +E  VN  I  N  V TR+M+ 
Sbjct: 581 LRRRLGEHVTQKGSLVAPERLRFDISQPTPLSAEDVQVVEAEVNRRILGNSEVTTRLMSP 640

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSE 713
           + AI  GA AL G KY + VRVVS+   D G +   S  LCGGTHV  TG+I L  IVSE
Sbjct: 641 DAAIELGAMALFGEKYGEEVRVVSMGGVDAGGNKEFSVELCGGTHVRRTGDIGLFKIVSE 700

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            ++ AG+RRIEA+TG+ A S+L  Q+ +L   AS LKV    V  +V  + EE R+L+  
Sbjct: 701 GAVAAGVRRIEAMTGRGALSYLDEQEGRLIQAASALKVPPAEVPAKVAALVEERRRLEKE 760

Query: 774 HAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            A  + Q+             +  ++  V  ++ ++ ++ +K+LK + D L+K++ SG++
Sbjct: 761 LADLRRQVALGGGGAGPAAAAAVKEVGGVKLLARVLPDLPAKDLKPLADDLKKQVGSGVV 820

Query: 826 MLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             V IS+ + K S+++ VTEDL  R +AVDL R  +  +GG GGGGRP MAQ+GGP+
Sbjct: 821 --VAISQADGKGSIVVGVTEDLAGRLSAVDLVRAGSAAMGGKGGGGRPDMAQAGGPD 875


>gi|294012144|ref|YP_003545604.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292675474|dbj|BAI96992.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 884

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/904 (48%), Positives = 599/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D F+ LI+ S  +T    EG    +HRVI DHLRS+SFLIADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFRALIEESGALTKTATEGEFKASHRVIADHLRSTSFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+ +L +EMG AY EL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMHRLVGSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL G+D   F+
Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY                   
Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538
                T G   +V AIV+ G   + A +G+ V +V +QTPFY E+GGQ+GD G  +   G
Sbjct: 461 ---SSTEGEGEVV-AIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   + D  K    +  H A +  G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSVKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H + +T  ++ +IE +VN+ +  N  V TR+M  +D
Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHGQIAAIEADVNEQVRHNEAVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I +  I+SES++ +
Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG+ AR  L  ++++L+  A+ LK +   V  R+  + E+ RKL  +L  AK
Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRKLERELAEAK 756

Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + L L     +      KI  VNF+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGGSAQAAGPEKIGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAILAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +A++ + VT+DL+   +AVDL R   + LGG GGGGRP MAQ GGP+G+KA+ A+  V
Sbjct: 816 DGRATIAVGVTDDLVGSISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKAEAALEAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KAAL 879


>gi|302382286|ref|YP_003818109.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192914|gb|ADL00486.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 881

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/894 (47%), Positives = 568/894 (63%), Gaps = 33/894 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS++  IR+TFL+FF  +GH  + S+ L+P NDPTLMF N+GMVPFK+ FTG   P Y  
Sbjct: 1   MSSLKQIRSTFLDFFAADGHTKVHSAPLVPQNDPTLMFVNAGMVPFKDYFTGAATPPYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+ AW L+T+ + L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIEQAWKLVTEGYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY +D+EA  +WKK++G   DKIIRI  +DNFW+M + GPCGPC+EIF+D G
Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDNGPCGPCTEIFWDYG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS  E+G+RY+EIWN VFMQFE++N +    LPK S+DTGMGLERM +VLQ 
Sbjct: 181 DHVAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDEIVRSLPKPSVDTGMGLERMTSVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K + +D DLF+ LI ASE  T  K EG+   +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 KNSVFDTDLFQTLIAASEDATSTKAEGDRAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L +EMG AYPEL +A+  IEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVSEMGEAYPELARAQASIEETLKQEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LL+     LG+  ++ G  AF LYDT+G PLD+ QD    RG   +D  +F+
Sbjct: 361 TTLGRGMGLLEDATRDLGEGGVIPGQTAFTLYDTYGFPLDLTQDEARRRGFT-VDTDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++R +A+  G G   +   W +LK++ G T F GYD + G              
Sbjct: 420 AAMEQQKTRGKANWKGSGQTASTGEWLALKDRLGPTVFTGYDAVDG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V AI++ G   +   +G+  EV+FDQTPFY E GGQ GD G     G 
Sbjct: 466 ---------SGEVLAILKDGTAADSVETGETAEVLFDQTPFYGEGGGQAGDKGEIEWAGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ DV K    ++ H   V  G L       L      R     NHSA HL+H AL  
Sbjct: 517 SARVLDVLKPTGDLYAHTIEVTSGTLAIGTRAQLRAAPDARLTTRANHSAAHLVHAALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H+ P+T  EL  IE  VN +I QNLP  T++M  ++A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHNAPLTEDELARIETEVNAVIRQNLPAETKLMGPQEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++         +S  LCGGTHV+ TG+I L  I SE+ I 
Sbjct: 637 IEAGAVALFGEKYGDEVRVLTLGKSLTSDKPYSVELCGGTHVARTGDIGLFKITSETGIA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRR+EA+TG+ AR  L+ Q    +SLA   KV   +V  RVE +  E + L+   A+ 
Sbjct: 697 AGIRRVEALTGEAARQFLLAQAGVARSLAQTFKVQPLDVPARVEALSTERKALEKQVAEL 756

Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +      + +  +I  V  ++ ++  VD K L+ V +  +K++ SG++ L+G++ 
Sbjct: 757 KKQLALGGGGSANAAPEEINGVKLIARVLDGVDGKGLRGVAEDFRKQVGSGVVALIGVT- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           + KA+V +  T D+ DR NA DLAR +   +GG G GG+   AQ G P+G+KA+
Sbjct: 816 DGKAAVTVAATSDVTDRVNAADLARAAVIAMGGQGAGGKADFAQGGAPDGSKAE 869


>gi|163746280|ref|ZP_02153638.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380165|gb|EDQ04576.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 885

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/892 (49%), Positives = 571/892 (64%), Gaps = 39/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F   GH+++PSS L+P NDPTLMFT +GMV FKN+FTG E   Y  
Sbjct: 1   MKTLNEIRSTFLNYFDAQGHQVVPSSPLVPRNDPTLMFTAAGMVQFKNLFTGVETRNYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AWDLLTKEF +
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWDLLTKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY  DEEA K+WK  +GL  ++IIRI T+DNFWS   TGPCGPC+EIF+D G
Sbjct: 121 DPNRLLVTVYHTDEEAVKIWKAHTGLPDERIIRIATDDNFWSAGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTREPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 TNDNYATDLMRSLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P+L  +MG+AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGVKDPLMHQLVPSLVQQMGAAYPELGQAQSLIRETLLLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L +   L G+ AFKLYDT G PLD+ QD L  +G A +D   FN
Sbjct: 361 QTLDRGLKLLDDELHGLPEGATLPGEAAFKLYDTFGFPLDLTQDALREKGRA-VDTDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G      +WF + +K G T+F+GYD                  
Sbjct: 420 TAMEAQKAKARAAWAGSGEAADATVWFDVADKSGVTEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+VQ  + VE A +G  V+V  +QTPFYAE+GGQ+GDTG       
Sbjct: 462 -----TESAEGQIVALVQGSDKVEAASAGSDVQVALNQTPFYAESGGQVGDTGVIRTQTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+FVH   V  G ++   S VL +D   R  +  NHSATHLLH AL  
Sbjct: 517 IVNVTDTRKSA-GVFVHFGHVIEGEVKPGQSAVLEVDRARRSAIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS    D LRFD +H+K +T  EL  +E  VND + QN PV TRIM  +DA
Sbjct: 576 ALGDHVSQRGSLNAHDRLRFDFSHAKGLTPEELTQVEREVNDYVRQNTPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-------GVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+   +G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RAMGAQALFGEKYGDEVRVVSMGQLEGSGKGSNKSTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  +G+RRIEA+TG  A + L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSASSSGVRRIEALTGTEALAWLRDQEAALSRVAAELKTSTADVPDRVRALLDERRSLSN 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L ++    +  +  +VN   F+  ++S V  K+L  ++D  + KI SG ++L
Sbjct: 756 EVAQLRRELAMSGGSAAAPEAREVNGVKFVGQVLSGVTGKDLPGLVDEHKAKIGSGAVLL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +  +   KA+V   VT+DL DR +AVD+ + +   LGG GGGGRP MAQ GG
Sbjct: 816 IADTG-GKAAVAGGVTKDLTDRLSAVDMVKAAVAELGGKGGGGRPDMAQGGG 866


>gi|126726568|ref|ZP_01742409.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704431|gb|EBA03523.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 886

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/911 (47%), Positives = 588/911 (64%), Gaps = 40/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR++FL +F K GH+++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MQTLNDIRSSFLSYFDKQGHQVVDSSPLVPRNDPTLMFVNSGMVQFKNMFTGAETRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFKE AI  AW+++TK   +
Sbjct: 61  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKEDAILFAWEMVTKVLGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS EE G+R++EIWNLVFMQ  Q       +LPK SIDTGMG+ER+A +LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQNVQHEDGSMTLLPKQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 241 TNDNYSTDLMRSLIEASANETSSDPDGAGKTHHRVIADHLRSTSFLLADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL ++MG+AYPEL QA+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVSQMGAAYPELQQAQSLITETLKQEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  ++ LG+   L+G  AFKLYDT G PLD+ QD L  +GL G+D   F+
Sbjct: 361 QTLERGLRLLDDEVAGLGEGADLSGSAAFKLYDTFGFPLDLTQDALREKGL-GVDKDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA  +G G      +WF + +++G T F+GYD                  
Sbjct: 420 AAMAEQKAKARAAWVGTGETADASLWFDIADEHGVTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+++ G  V+  + G  V++V +QTPFYAE+GGQ+GD G       
Sbjct: 462 -----TEVAEGQVLALIKDGVSVDATIVGDSVQIVMNQTPFYAESGGQIGDAGTLKTANG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD +K A G+F+HH  V  G +  + +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 LVEVTDTRKNA-GLFIHHGKVVSGTVSKDEAAELVVDHARRGAIRANHSATHLLHEALRG 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS    D LRFD +H+  I+  +L+ +E+ VN  I QN  V TRIM  +DA
Sbjct: 576 ALGDHVSQRGSLNAADRLRFDFSHNAAISQDDLRKVEEEVNAYIRQNTEVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  + G         +S  LCGGTHV  TG+I    I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGQQSGSGKGANGETYSLELCGGTHVGQTGDIGTFVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RRIEA+TG  A ++L  QD+++ ++A  LK     V  RV+ + +E + L  
Sbjct: 696 DSASSAGVRRIEALTGAEAFAYLRDQDQRISTVAGMLKAQPEEVGARVKALMDERKSLQN 755

Query: 771 QLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           QL  A+R L ++    S      ++  V F + +++ V  K+L +++D  ++ + SG ++
Sbjct: 756 QLAEARRSLAMSGGGQSAPAAAIEVGGVKFHAQVLTGVTGKDLPALVDEHKESLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+  +   KA+V   VT DL++R +AVDL + +   LGG GGGGRP MAQ GG +   ++
Sbjct: 816 LIADTG-GKAAVAAGVTADLVERISAVDLVKAAVVELGGKGGGGRPDMAQGGGASAENSE 874

Query: 887 QAIAGVASFLK 897
            AI    + LK
Sbjct: 875 NAIKAATAVLK 885


>gi|297717784|gb|ADI50035.1| alanyl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13]
          Length = 865

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/889 (49%), Positives = 597/889 (67%), Gaps = 34/889 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F++N HE++ SSSL+P NDPTL+FTN+GMV FK++FTG EK  Y  
Sbjct: 1   MRTLADIRSTFLNYFKENRHEVVASSSLVPANDPTLLFTNAGMVQFKDVFTGLEKRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI LAW+L+TK F L
Sbjct: 61  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIYLAWNLVTKNFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY EDEEA  LWKKI+G    KIIRI T+DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 SPERLLVTVYHEDEEAANLWKKIAGFPDHKIIRIATSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+ ++G+R+ E WNLVFMQFEQQ    R  LPK S+DTGMGLER AT+LQ 
Sbjct: 181 ESIAGGPPGSADQDGDRFTEFWNLVFMQFEQQADGTRINLPKPSVDTGMGLERFATILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD DLFK LI+AS ++TG +       +H VI DHLR+SSFL+ADG++P+NEGRGY
Sbjct: 241 VHNNYDTDLFKSLIEASTELTGTQAAAYR-HSHNVIADHLRASSFLLADGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+  L   MG+AYPEL +A+ +I+E L+ E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKEPLMYRLVDRLVEVMGTAYPELTRAQAMIKENLKLEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+   + L   + L+G++AFKLYDT+G PLD+ QD+L ++  + +D+  FN
Sbjct: 360 QTLERGLRLLEEETAKLAPTQALSGEIAFKLYDTYGFPLDLTQDVLRSQDRS-VDLEGFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++ ARAH  G G    E++WF +++++GA++F+GY+                  
Sbjct: 419 AAMAAQKAAARAHWSGSGEKKDEQVWFDIQQEFGASEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDG 538
                +    ++V+AIV   + V    +GQ  ++VF+QTPFYAE+GGQ GD G     +G
Sbjct: 461 -----SETAEALVQAIVVNSQTVAHLSAGQTGDIVFNQTPFYAESGGQEGDQGVIHFANG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++ +  K    + VHH  +E G ++   +  L ++ Q R+ L  +HSATHLLH AL 
Sbjct: 516 AQARVLNTNKHLGSLHVHHVTLESGRIKVGETAKLVVNGQRRQGLRAHHSATHLLHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD TH+KP+T+ E+K+IE  VN  I  N  + T +M  E+
Sbjct: 576 RHLGGHVTQKGSLVAADRLRFDFTHTKPLTAEEIKAIEQEVNLQILANTAIETHLMAAEE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AIASGA AL G KY D VRV+ +   DG  +S  LCGGTH S TG+I L+ I+SE+ + A
Sbjct: 636 AIASGAMALFGEKYGDEVRVLKMGQCDGAAYSIELCGGTHASRTGDIGLVKILSEAGVSA 695

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RR+EAI G  A  +L    E++  L+  LK     +  +++ + +E +    QL   +
Sbjct: 696 GVRRLEAIAGIAALDYLRSLQEQISKLSFTLKCPSVEIPEKIDLLLQERKTFERQLADLR 755

Query: 777 RKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +K+ L            +I  +N ++  + ++ +K+LK ++D L+ +++SG+I+L  +  
Sbjct: 756 QKMALGGSSGTTVAGLKQIGHINVLTKNLVDIPAKDLKPLVDQLKTEVKSGVIILTSVV- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           E K +++I VT DL D+ NAVDL R  ++VLGG GGGGRP MAQ+GG N
Sbjct: 815 EDKVALVIGVTADLTDKVNAVDLVRAGSEVLGGKGGGGRPDMAQAGGSN 863


>gi|148260046|ref|YP_001234173.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|205829966|sp|A5FXC2|SYA_ACICJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146401727|gb|ABQ30254.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5]
          Length = 878

 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/902 (48%), Positives = 594/902 (65%), Gaps = 30/902 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TVY ED+EA  LWK+I+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQF ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS +V+    +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EP +  L+PAL  +MG A+PEL +A+ LI ETL+ E+++F 
Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL+  +  LG  E L G VAFKLYDT+G PLD+ +D L  +   G+D   F 
Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQ++RARA   G G   TE +W  L+++ G T+F+GY                   
Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYS------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + + A+V  G     A +GQ+V ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 462 -----TEESDASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD QKKA  +FVH+  +E G +    S+   +D+  R  +  +HSATHLLH AL  
Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD++  +P+T AEL+++E  VN  I +N  V TR+M  ++A
Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +  GA AL G KY D VRVVS+   D G   +S  LCGGTHV+ TG+I    I++ES + 
Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGRSAYSIELCGGTHVARTGDIGAFRILAESGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AGIRRIEA+TG+ A +    + + L+  A+ LKV+   +  R+  + EE ++   Q+   
Sbjct: 697 AGIRRIEAVTGEAALAATEAETDLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +RKL          ++A + F +  + EV  ++LKS+ D++ K + SGI  LV  + E K
Sbjct: 757 QRKLATGGAAAEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-ESK 815

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           AS+++ V+ DL    NAV L + ++ V+GG GGGGRP MAQ+GGP+ +KAD+A+A V + 
Sbjct: 816 ASIVVAVSPDLTSANNAVTLVQAASGVVGGKGGGGRPDMAQAGGPDASKADEALAAVRAL 875

Query: 896 LK 897
           +K
Sbjct: 876 IK 877


>gi|294083659|ref|YP_003550416.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663231|gb|ADE38332.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 879

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/894 (49%), Positives = 592/894 (66%), Gaps = 39/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+ IR TFLE+F+ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MASVNDIRATFLEYFKDNGHQVVDSSPLVPQNDPTLMFTNAGMVQFKNLFTGLETRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+E+ L
Sbjct: 61  AATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +TVY ED+EA  LWKKI+GL+ D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DASKLLVTVYHEDDEAADLWKKIAGLNDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQFE Q   ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFE-QTANERINLPKPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDL + LIQAS +   +  +G++ V+HRV+ DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 240 KHDNYDIDLMRALIQASAEAANVAADGDHNVSHRVVADHLRASSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +   +G  +P M  L+PAL  EMG  YPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHLHQMGCQDPTMWRLVPALVAEMGGHYPELGRAQALITETLKLEEGRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISF 418
           +TL RGL +L+  ++      +L+G  AFKLYDT+G PLD+ QD +  RG    +D+  F
Sbjct: 360 ETLGRGLRILNDEVAGKAAGGVLDGKTAFKLYDTYGFPLDLTQDFM--RGYEWDVDLDGF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N A+E Q++ AR    G G   TE IW  L ++ GAT+F+GY                  
Sbjct: 418 NSAMEAQKAAARKAWSGSGDAATETIWLDLGQQLGATEFLGYS----------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537
                 T+     V A+V+ G  +  A +G+ V+++ +QTPFYAE+GGQ+GDTG  +  D
Sbjct: 461 ------TDTAEGQVTALVRDGAAIASAAAGEDVQIITNQTPFYAESGGQVGDTGVISWAD 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G    + D  K   G+FVH A + +G L     + L ID   R +L  NHSATHLLH AL
Sbjct: 515 GA-ADVADTFKTPMGMFVHRATITKGSLDVGNDVRLDIDVARRLRLRANHSATHLLHEAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD LRFD +H K +T  EL  ++  VN  +  N  V TRIM  E
Sbjct: 574 REVLGEHVAQKGSMVGPDRLRFDFSHPKAMTEDELARVQAIVNSRVQMNSDVSTRIMTPE 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHVSSTGEIMLLYIVSE 713
            AI  GA AL G KY D VRVV +  E         S  LCGGTHV+ TG+I +L ++ E
Sbjct: 634 AAIELGALALFGEKYGDEVRVVQMGGETDIKGRSAWSVELCGGTHVNRTGDISILKVIGE 693

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           S++  G+RRIEA+T   A   +  ++  L   A  LK++   +  RV ++ E+ ++ +  
Sbjct: 694 SAVAGGVRRIEAVTQAGAVEWIEHRERILSHTAELLKIAPEQLADRVAKLLEDNKRAERD 753

Query: 772 LIHAKRKL--QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +   +RKL    +       +I  VNF+  ++ +  ++ELKS+ D +++ +++ +I LV 
Sbjct: 754 ITMMRRKLAAGGDAGGAGSEQINGVNFVGRLMEDTPARELKSMADEMKQGLENAVICLVA 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            +   KAS+++ VT+DL+D  NAVDL R+ +  LGGGGGGGRP MAQ+GGPN +
Sbjct: 814 -TDSGKASIVVAVTDDLVDAKNAVDLVRVGSAALGGGGGGGRPDMAQAGGPNAD 866


>gi|149202694|ref|ZP_01879666.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149143976|gb|EDM32010.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 893

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/894 (49%), Positives = 583/894 (65%), Gaps = 41/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 3   MPTLNEIRSTFLSFFERNDHRVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHRDYVR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 63  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 123 DKSKLLVTVYHTDDEAANIWKKYAGLSDDRIIRIKTDDNFWSMGSTGPCGPCTEIFYDHG 182

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 183 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGSMRALDMQSIDTGMGLERIGALLQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 243 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG A+PEL +A+ +IEETL+ E+ RF 
Sbjct: 303 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVAQMGQAFPELGRAQAMIEETLKLEETRFK 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  LS L +   L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 363 QTLERGLRLLDDELSDLAEGAALPGVTAFKLYDTYGFPLDLTQDALREKGR-DVDTAGFD 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + E+ G T F+GYD  R               
Sbjct: 422 AAMAEQKAKARAAWAGTGEAADQAVWFDIAEEKGTTDFLGYDTER--------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G  V  A  G+ V++V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 467 --------AEGQIVALVRDGVRVSAATMGESVQIVLNQTPFYAESGGQVGDSGLLKTETG 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++++TD  KK  G+FVH A+VE G ++   +  L + +  R  +  NHSATHLLH AL  
Sbjct: 519 QVRVTDT-KKVAGVFVHIAVVETGEIKAGQAAQLEVSHARRSAIRANHSATHLLHEALRG 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++AEL+ +E  VND I QN PV TRIM  +DA
Sbjct: 578 ALGEHVAQRGSLNAEDRLRFDFSHAKALSAAELERVEREVNDYIRQNAPVETRIMAPDDA 637

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+       +  DG  +S  LCGGTHV  TG+I +   ++
Sbjct: 638 RALGAQALFGEKYGDEVRVVSMGQAEGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALA 697

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES+  AG+RRIEA+TG  A  +L GQ  +L  +AS LK    +V  RV+ + EE R L  
Sbjct: 698 ESASSAGVRRIEALTGAAAFDYLSGQAARLGQVASDLKARPEDVAERVKVLMEERRALAN 757

Query: 771 QLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L ++            ++  V  ++ +++ V  K+L  ++D  + ++ SG +
Sbjct: 758 EVAQLRRELAMSGGAGQGGGAEAREVGGVKLIAQVLTGVQGKDLPPLIDEHKARLGSGAV 817

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +L+  +   K +V   VTEDL DR +AV++ R +   LGG GGGGR  MAQ GG
Sbjct: 818 LLIADTG-GKVAVAAGVTEDLTDRISAVEMVRAAVAELGGKGGGGRADMAQGGG 870


>gi|89071223|ref|ZP_01158404.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89043236|gb|EAR49465.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 885

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/893 (48%), Positives = 592/893 (66%), Gaps = 38/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL++F++ GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E   YQ 
Sbjct: 1   MTSLADIRSTFLDYFRRQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFK  AI  AW+++TKE D+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKADAIPFAWEMVTKELDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA +LW+K++GL  ++IIRI T+DNFW M  TGPCGP SEIFFD G
Sbjct: 121 PAERLLVTVYHDDDEAAELWRKVAGLPDERIIRIATDDNFWMMGPTGPCGPSSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E   GG PGS EE G+R+IEIWNLVFMQFEQ     R  L   SIDTGMGLER++++LQ 
Sbjct: 181 EKFWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTRRELAAQSIDTGMGLERISSLLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             N ++ DLF+ +I AS   +    +  ++ +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 241 TNNVFETDLFRAIIDASAHASNTSTDEAHLTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG ++PLM  L+PAL  +MG+AYPEL + + +IE+TL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGASDPLMHRLVPALVQQMGAAYPELREQQAMIEDTLETEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  ++ L   + L G+ AFKLYDT+G PLD+ +D L  RG++ +D+  FN
Sbjct: 361 NTLDRGLKLLDDEVARLETGKNLPGETAFKLYDTYGFPLDLTEDALRERGIS-VDLPGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++EEQ+ +ARA   G G    + +WF + +++G T F+GYD                  
Sbjct: 420 ASMEEQKRKARAAWSGSGEAADQTVWFDIADEHGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  VE A +G +V++V +QTPFYAEAGGQ+GD G    +  
Sbjct: 462 -----TETAEGQVLALVRDGAPVERAGAGAQVQIVLNQTPFYAEAGGQVGDAGTLTTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K A G++VH A V  G +       L +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 TAEITDCRKIA-GVYVHFARVTAGEIAAGEGARLEVDHARRGAIRANHSATHLLNEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS   PD LRFD +H+K + + ++ ++E  VN++I QN PV TRIM  ++A
Sbjct: 576 VLGDHVAQRGSLNAPDRLRFDFSHNKAMGADDIAAVEREVNELIRQNAPVTTRIMTPDEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE------DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+         DG  +S  LCGGTHV+ TG+I L  + +E
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGIADTGKGLDGKTYSIELCGGTHVARTGDIGLFALTTE 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           ++  AG+RRIEA+TG+ A + L  +D  L  + + LK     V GRV  + +E + L  +
Sbjct: 696 AASAAGVRRIEALTGEAAMAELRRRDRSLGEVEALLKCGPDEVAGRVRALMDERKALANE 755

Query: 772 LIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   +R+L ++    E  +  +I  + F++ ++S V  K+L S++D ++  + +G ++L+
Sbjct: 756 VSQLRRQLAMSGGPAEGPAAREINGMRFVAQVLSGVTGKDLPSLIDGMKSDLGTGAVLLI 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               + KA+V   VT DL++R +AVDL R +   LGG GGGGRP +AQ GG +
Sbjct: 816 A-DTDGKAAVAAGVTADLVERVSAVDLVRAAVAELGGKGGGGRPDLAQGGGKD 867


>gi|159044191|ref|YP_001532985.1| alanyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|205830080|sp|A8LL20|SYA_DINSH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157911951|gb|ABV93384.1| alanyl-tRNA synthase [Dinoroseobacter shibae DFL 12]
          Length = 887

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/894 (50%), Positives = 577/894 (64%), Gaps = 41/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL FF  +GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MPSLNEIRSTFLNFFGGHGHEIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRDYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EA ++WKK +GLS D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLVTVYHTDDEAAEIWKKHAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTREPLPKPSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 SHDNYDTDLFKTLIEASAHATSVDPYGDKNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG A+PEL +A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMYRLVPALVGQMGQAFPELGRAQALIEETLMLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ + +   L G+ AFKLYDT+G PLD+ QD L  +G A ++   F+
Sbjct: 361 QTLDRGLKLLDEAVADVPEGGALPGETAFKLYDTYGFPLDLTQDALREKGRA-VETEGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q+++ARA   G G    E IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMADQKAKARAAWAGSGETADESIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V +   G+   +V +QTPFYAE+GGQ+GD+G  +    
Sbjct: 462 -----TEVAEGQVLALVKDGAQVAQLAEGETGWMVLNQTPFYAESGGQVGDSGGYLKSNG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              I D QK+  G+F H    +   L+    L + +D   R  +  NHSATHLLH AL  
Sbjct: 517 SGAIHDTQKR-NGLFAHKVTPKAQPLKAGDVLEMRVDPARRTAIRANHSATHLLHEALRQ 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS    D LRFD +HSK +T  EL+ +E  VN  I QN PV TRIM  + A
Sbjct: 576 ALGAHVAQRGSLNAADRLRFDFSHSKALTLEELQKVEAEVNAYIRQNSPVETRIMTPDAA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  + G         +S  LCGGTHV  TG+I +   V 
Sbjct: 636 RDLGAQALFGEKYGDEVRVVSMGRQSGSGKGVSGETYSLELCGGTHVKQTGDIGVFVTVG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           E++  +G+RRIEA+TG+ A ++L  QD +L  +A+ LK    +V  RV  + +E + LQ 
Sbjct: 696 ETASSSGVRRIEALTGEDAFAYLSAQDYRLAEVAASLKAQAADVPERVRSLLDERKALQN 755

Query: 772 -LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +   +R+L +              +A V F++  +S V  ++L S++D  + ++ SG I
Sbjct: 756 EVAQLRRELAMAGGGQGTAAPEAEAVAGVPFLAQSLSGVSGRDLPSLIDEHKARLGSGAI 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +L+  +   KA+V   VT DL DR +AVDL + +   LGG GGGGRP MAQ GG
Sbjct: 816 LLIADTG-GKAAVAAGVTADLTDRLSAVDLVKAAVAELGGKGGGGRPDMAQGGG 868


>gi|254487494|ref|ZP_05100699.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214044363|gb|EEB85001.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 885

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/891 (48%), Positives = 577/891 (64%), Gaps = 39/891 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+++GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MKTLNDIRSTFLGYFERHGHSVQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RLY+TVY  D+EA  +WKK++GL  ++IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPKRLYVTVYHTDDEAADIWKKVAGLPDERIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFPDGTRKPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLILASANASNTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGIQDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD  L  L +   L+G+ AFKLYDT+G P+D+ QD L  +  + +D+  F+
Sbjct: 361 KTLDRGLKLLDDELKGLPEGANLSGEAAFKLYDTYGFPVDLTQDALREQDRS-VDLEGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ ARA   G G      +WF + E  G T F+GYD                  
Sbjct: 420 AAMEKQKALARAAWSGSGEAADATVWFDVAENAGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G  V+ A +G KV++  +QTPFYAE+GGQ+GDTG    +  
Sbjct: 462 -----TETAEGQIVALIQDGAQVDAAKTGDKVQIALNQTPFYAESGGQVGDTGLIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+F+H   V  G + T  + VL +D+  R  +  NHSATHLLH AL  
Sbjct: 517 SVTVTDTRKTA-GVFIHFGDVTEGTITTGQAAVLDVDHARRTSIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+ P+++ EL  +E  VN  I QN PV TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAADRLRFDYSHNSPMSAEELAQVEQEVNTYIRQNAPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-------GVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  + G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RGLGAQALFGEKYGDEVRVVSMGRQPGSGKGADKSTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +SS  +G+RRIEA+TG  A S L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGVRRIEALTGTEALSWLRAQETALSRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L ++    +  +  DVN   FM+ ++S V  K+L +++D  + K+ SG+++L
Sbjct: 756 EVAQLRRELAMSGGGAAAPEARDVNGMKFMAQVLSGVTGKDLPALVDEYKAKLGSGVVLL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +    + KA+V   VT DL  + +AVD+A+ +   LGG GGGGRP MAQ G
Sbjct: 816 IA-DADGKAAVAAGVTADLTSQVSAVDIAKAAVAELGGKGGGGRPDMAQGG 865


>gi|77464020|ref|YP_353524.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|123591443|sp|Q3J0R1|SYA_RHOS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77388438|gb|ABA79623.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
          Length = 883

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/874 (49%), Positives = 574/874 (65%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS+ E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G     A +GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGAGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+       +  DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 772 -LIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   +R+  +     S   +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            +   KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 DTG-GKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|205830243|sp|Q1GHA1|SYA_SILST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 883

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/909 (48%), Positives = 591/909 (65%), Gaps = 39/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 1   MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  ++IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT  +  G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L K ++L G+ AFKLYDT G PLD+ QD L A+G+  +D   F+
Sbjct: 360 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKGIE-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG  T  K++F + +  G T+F+GY+                  
Sbjct: 419 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  V+ A +G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 461 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 516 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ +L  I   VND I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+      +  DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK    +V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 754

Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K Q+             +I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + AD+A
Sbjct: 815 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 873

Query: 889 IAGVASFLK 897
           I    + LK
Sbjct: 874 IKAAEALLK 882


>gi|296535675|ref|ZP_06897850.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263999|gb|EFH10449.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 881

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/895 (48%), Positives = 582/895 (65%), Gaps = 35/895 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL++F ++GH ++ SS L+P NDPTLMFTNSGMV FKN+FTGQEK  Y  
Sbjct: 1   MTSSNDIRATFLDYFARHGHTVVESSPLVPRNDPTLMFTNSGMVQFKNVFTGQEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW LLT++F L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWTLLTRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TV+ EDE+A  LW+KI+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVFSEDEDAAALWRKIAGLPDEKIIRIPTSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+ ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYLEEPAGTRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDID F+ LI AS + TG + +G   ++HRV+ DHLRS +FLIADG++P+NEGRGY
Sbjct: 241 KHDNYDIDTFRALILASAEATGQEADGPFKISHRVVADHLRSGAFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRAM +A ++G  EPL+  LLPAL  +MG+AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRILRRAMRHAHMMGTKEPLLYRLLPALIRQMGAAYPELVRAEALISETLKLEENRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL      LG    L GDVAFKLYDT+G PLD+ QD L   G A +D+  F 
Sbjct: 361 SLLERGLGLLAEESGKLGDKGTLPGDVAFKLYDTYGFPLDLTQDALRGEGKA-VDVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ RARA   G G   TE +WF LKEK GAT+F+GY                   
Sbjct: 420 AAMAEQKKRARAAWAGSGEAATETLWFDLKEKLGATEFLGYS------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                T      + A+V  G +VE A  G +V VV +QTPFYAE+GGQ+GDTG   G DG
Sbjct: 462 -----TEKAEGEILAVVANGAVVERAGPGTEVAVVLNQTPFYAESGGQVGDTGSITGADG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ + D QKK  G+FVH   VE G       +   + ++ R  +  +HSATHLLH AL 
Sbjct: 517 LRIAVRDTQKKL-GLFVHLGTVEAGEAAPGKPVQAEVAHERRSAIRAHHSATHLLHEALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   P+   +L  +E  VN  I +N  V+TR+M  E 
Sbjct: 576 RRLGTHVAQKGSLNAPDRLRFDVSQPTPMQPEDLAWVEAEVNARIRENAEVITRLMTPEA 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY D VRVV + +     E  GV+S  LCGGTHV  TG+I L  IV+E
Sbjct: 636 AVQAGAMALFGEKYGDEVRVVGMGHDPEATEKHGVYSLELCGGTHVRRTGDIGLFKIVAE 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
            ++ AG+RR+EA+TG  A + +  + + L+  A+ LKV+   +  R+  + EE RKL+  
Sbjct: 696 GAVSAGVRRVEAVTGAAALALIEAEQKALREAAAALKVNPAELPARIASLVEERRKLERD 755

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +   ++KL     + S  ++  + F +  + EV  ++LK + +A+ K     ++ LV  +
Sbjct: 756 VAELRKKLATGGSEASVEEVGGLRFSARNLGEVPPRDLKGLAEAILKSGTVDVVALVSTA 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            E KAS++  V +    R +AV L R  +  +GG GGGGRP MAQ+GGP+ +KA+
Sbjct: 816 -EGKASLVAGVADSAKGRADAVALVRAGSAAVGGKGGGGRPDMAQAGGPDADKAE 869


>gi|99081073|ref|YP_613227.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040]
 gi|99037353|gb|ABF63965.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040]
          Length = 902

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/909 (48%), Positives = 591/909 (65%), Gaps = 39/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 20  MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 80  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  ++IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT  +  G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 259 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L K ++L G+ AFKLYDT G PLD+ QD L A+G+  +D   F+
Sbjct: 379 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKGIE-VDTDGFD 437

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG  T  K++F + +  G T+F+GY+                  
Sbjct: 438 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 479

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  V+ A +G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 480 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 534

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 535 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ +L  I   VND I QN  V TRIM  +DA
Sbjct: 594 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 653

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+      +  DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 713

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK    +V+ R++ + +E + LQ  
Sbjct: 714 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 773

Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K Q+             +I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 774 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + AD+A
Sbjct: 834 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 892

Query: 889 IAGVASFLK 897
           I    + LK
Sbjct: 893 IKAAEALLK 901


>gi|114771071|ref|ZP_01448511.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114548353|gb|EAU51239.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 885

 Score =  829 bits (2142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/910 (50%), Positives = 594/910 (65%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +V+ IR+TFL+FF+KN H ++ SS L+P NDPTLMFTNSGMV FKN F GQE   Y  
Sbjct: 1   MVSVNDIRSTFLDFFEKNNHTVVDSSPLVPRNDPTLMFTNSGMVQFKNQFLGQEIRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIIYAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EA  +WKK +GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKYAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS EE G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+A +LQ 
Sbjct: 181 ESVFGGPPGSPEEDGDRFIEIWNVVFMQNEQFSDGTLKPLKMQSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DL + LI+AS Q TG+   G+  ++HRVI DHLRS+SFLI+DGILP+NEGRGY
Sbjct: 241 SHDNYDTDLMRDLIEASAQATGVDPYGDQNLHHRVIADHLRSTSFLISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL ++MG AYPEL  A+ LIEE+L  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPIMHQLVPALVSQMGQAYPELGHAQSLIEESLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD           L+G  AFKLYDT G PLD+ QD L  +G+  +D+  FN
Sbjct: 361 TTLDRGLKLLDEETGVFASGATLSGKTAFKLYDTFGFPLDLTQDALREKGV-DVDVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA  +G G    E IWF + +K+G T F+GYD                  
Sbjct: 420 DAMSEQKAKARAAWVGSGEVADEGIWFDIADKHGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G IV +   G  V VV +QTPFYAE+GGQ+ D G    +  
Sbjct: 462 -----TQTSEGQILALLQDGNIVNKVSEGDDVMVVLNQTPFYAESGGQIADNGSINVEKN 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + ITDV+KKA G+F+H   V  G +    S  L+++ + R  +  +H+ATHLL+ AL +
Sbjct: 517 EIIITDVKKKA-GVFIHIGRVVFGEISNGSSAELSVNTEMRSGICNSHTATHLLNEALRS 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H++Q GS    + LRFD +HSK +T +EL+ +E  VN++I QN  V TRIM  EDA
Sbjct: 576 KLGQHIAQRGSLNAENRLRFDFSHSKSMTQSELRDVELEVNNLIRQNSSVKTRIMTPEDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  +        G  +S  LCGGTHV  TG+I    +++
Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGNKKDSGKGLAGNTYSLELCGGTHVQRTGQIGAFALIA 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES+   G+RRIEA TG+ A  H   Q + +  LAS  K    NV+ RV+ + +E + LQ 
Sbjct: 696 ESASAGGVRRIEAFTGKTAELHHAEQSKIMNELASIFKTKTENVIDRVKSLIDERKLLQS 755

Query: 772 -LIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +I+ ++ + +   D S +  KI + NF      +V SK+L+S++D  + ++ SGII+L+
Sbjct: 756 EIINLRKAVAMGSNDDSQNILKINNFNFYVQTFDDVPSKDLRSLVDEHKNRLGSGIILLI 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 KA++   VT DL D+ NAVDL ++ A  LGG GGGGRP MAQ+GG +     +A
Sbjct: 816 S-GAGGKAAISAGVTSDLTDQINAVDLVKIVAVELGGKGGGGRPDMAQAGGNDMANVKKA 874

Query: 889 IAGVASFLKK 898
           I+ V +FLK+
Sbjct: 875 ISLVENFLKE 884


>gi|149184401|ref|ZP_01862719.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831721|gb|EDL50154.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 887

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/909 (47%), Positives = 598/909 (65%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+FF    H  +PS+ L+P +DPTLMF N+GMVPFKN FTG E P    
Sbjct: 1   MTSTNEIRRSFLDFFASKDHAEVPSAPLVPFSDPTLMFVNAGMVPFKNAFTGLETPPAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTK++ L
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDHAWTLLTKDWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKK +G + ++IIRI T DNFW+M   GPCGPCSEIF+D G
Sbjct: 121 DKDRLLVTVYHTDDEAFDLWKKRTGFADERIIRIPTKDNFWAMGSDGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQF Q+  +    LPK SIDTGMG+ER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFTQEADEIVGDLPKPSIDTGMGIERVAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +TG+K EG+   +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIGASEALTGVKAEGDRQASHRVIADHLRSTSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG ++PLM  L+P L +EMG+AYPEL++ + LI+E L  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGASQPLMHRLVPELVSEMGAAYPELVRGQALIQEVLEREETQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD     +G+   L+G  AFKLYDT+G P D+ +D L  RG+ G+D   F+
Sbjct: 361 RTLDKGLKLLDEATGDMGEGGTLDGGTAFKLYDTYGFPYDLTEDALRNRGI-GVDKDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G   +E++WF + E+ G+T+F GY    G              
Sbjct: 420 AAMAQQKAAARAAWKGSGEAASEEVWFDIAEREGSTEFTGYSSDTG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                     + V A+V+ G+ V+ A  G+ V ++ +QTPFY E+GGQ GD G     +G
Sbjct: 466 ---------EAEVVALVKDGKEVDSAGEGEDVIILTNQTPFYGESGGQTGDAGRIWTPEG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  +++   K    +  H A + +G ++   ++   ID + R ++  NHSATHL+H AL 
Sbjct: 517 LEAKVSTTNKPLGRLHTHVATIAKGNVKVGDAVHFEIDAERRDRIRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS ++ D  RFD +H KP++  ++ +IE  VN+ I  N  V TR+M  +D
Sbjct: 577 NRLGGHVTQKGSLVSDDRFRFDFSHPKPLSDEDIAAIEAEVNEEIRANETVGTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+A+GA AL G KY D VRV+S+  +  +G  +S  LCGGTHV +TG+I L  IVSES++
Sbjct: 637 AVAAGALALFGEKYGDEVRVLSMGRKGGEGKNYSVELCGGTHVEATGDIGLFKIVSESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEA+TG+ AR  L+ +DE ++++A+ LK S      RV  + +E ++L  +L  
Sbjct: 697 SSGVRRIEALTGEAARQWLLARDETVRAIAAALKTSPDEAATRVSALVDERKRLEKELAE 756

Query: 775 AKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           AKR              +  +I  V F   +I  +  K+L+ ++D  + ++ SG+  +  
Sbjct: 757 AKRALALGGGGAGDAAAADEEIGGVKFSGQVIEGLSPKDLRPLLDEAKTRMGSGVAAICA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K +  + VT+DL +RF+AVD  R   + LGG GGGGRP MAQ GGP+G+KA+ AI
Sbjct: 817 VN-EGKGAFAVAVTDDLTERFSAVDFVRAGVEALGGRGGGGRPDMAQGGGPDGSKAEDAI 875

Query: 890 AGVASFLKK 898
           A V   L K
Sbjct: 876 AAVRDALAK 884


>gi|221639882|ref|YP_002526144.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|221160663|gb|ACM01643.1| Alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 883

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/874 (49%), Positives = 572/874 (65%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS+ E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGTQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL     L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPDGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G     A  GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRAAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+       +  DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGADGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 772 -LIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   +R+  +     S   +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            +   KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 DTG-GKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|126462865|ref|YP_001043979.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|205830188|sp|A3PLJ1|SYA_RHOS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126104529|gb|ABN77207.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 883

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/874 (49%), Positives = 571/874 (65%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDHEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS+ E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G        GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TEQAEGQVLALVAAGAETASVGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+       +  DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALTYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 772 -LIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   +R+  +     S   +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            +   KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 DTG-GKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|85703236|ref|ZP_01034340.1| alanyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85672164|gb|EAQ27021.1| alanyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 892

 Score =  825 bits (2131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/894 (48%), Positives = 578/894 (64%), Gaps = 40/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPTLNEIRSTFLSFFERNDHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHREYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAATIWKKYAGLSDDRIIRIKTDDNFWSMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGTMRALDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG A+PEL +A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVAQMGQAFPELGRAQAMIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L+ L     L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLERGLRLLDDELTALDDSAALPGATAFKLYDTYGFPLDLTQDALREKGRE-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + E+  AT F+GYD                  
Sbjct: 420 AAMAEQKAKARAAWSGTGEAADQAVWFDISEQVSATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + V AIV +G+ V+    G    V+F+QTPFYAE+GGQ+GD G  +G  +
Sbjct: 462 -----TEVSEAQVVAIVSEGKRVDAIEPGGTGWVIFNQTPFYAESGGQVGDQGRLVGKAV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              I+D +K   G+F H    + G L   MS+ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 SGSISDTKKFPGGLFGHLFTPDEGRLGVGMSVKLEVDHSRRNAIRANHSATHLLHEALRK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++AEL+ +E  VN+ I QN PV TRIM  +DA
Sbjct: 577 ALGEHVAQRGSLNAEDRLRFDFSHAKALSTAELERVESEVNEFIRQNAPVETRIMTPDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  E       DG  +S  LCGGTHV  TG+I +   + 
Sbjct: 637 RALGAQALFGEKYGDEVRVVSMGAEAGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +++  AG+RRIEA+TG  A  +L GQ  +L  +AS LK    +V  RV+ + +E R L  
Sbjct: 697 DAASSAGVRRIEALTGAAAFDYLSGQAARLGQVASELKARPEDVADRVKALMDERRALAN 756

Query: 771 QLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L ++        +    +  V  ++ +++ V  K+L  ++D  + ++ SG +
Sbjct: 757 EVAQLRRELAMSGGAAQGGTVEARDVGGVKLIAQVMTGVQGKDLPPLIDEHKARLGSGAV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +L+  +  K A V   VT+DL  R +AV++ R++   LGG GGGGRP MAQ GG
Sbjct: 817 LLIADTGGKVA-VAAGVTDDLTGRLSAVEMVRVAVVELGGKGGGGRPDMAQGGG 869


>gi|254292635|ref|YP_003058658.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254041166|gb|ACT57961.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 897

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/908 (48%), Positives = 591/908 (65%), Gaps = 37/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++V+ +R+ FLE+F  NGHE++ S+ L+P   D TL+F N+GMVPFKN+FTG E P +  
Sbjct: 14  NSVNGVRSQFLEYFNSNGHEVVQSAPLVPQGGDSTLLFVNAGMVPFKNLFTGAETPAFLK 73

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++TK F L
Sbjct: 74  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIVHAWNVVTKVFGL 133

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TV+ ED+EA  LWKKI+GLS DKIIRI+T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 134 PVDKLVVTVFSEDDEAAMLWKKIAGLSDDKIIRISTSDNFWSMGDTGPCGPCSEIFYDHG 193

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS EE G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 194 PDVWGGPPGSPEEDGDRFIEIWNLVFMQFDQSKDGSRVSLPKPSIDTGMGLERIAAVLQG 253

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNY+IDLF++LI A E V G+K     + + RVI DHLRSS+FLIADG+ P+NEGRGY
Sbjct: 254 VHNNYEIDLFQNLIAAEEDVYGLKQSEKTLGSLRVISDHLRSSAFLIADGVTPSNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  EP M  L+PAL  EMG A+PEL +A+  I  TL  E+ RF 
Sbjct: 314 VLRRIMRRAMRHGHLLGSKEPQMHKLVPALVAEMGVAFPELGRAQASIVSTLEQEEGRFQ 373

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LL+   S +GK ++L G+ AFKLYDT G P+D+ QD+L A+G+  +D + F 
Sbjct: 374 RTLGRGLALLEDATSSMGKGDVLPGETAFKLYDTFGFPVDLTQDVLRAKGIE-VDEVGFE 432

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ QR  ++A   G   G   K+WF  ++ +GAT+FIGY                   
Sbjct: 433 KAMKVQRESSQASWQGAAEGDAVKVWFQTRDAHGATEFIGYS------------------ 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                     + +K I+  GE+   A  GQK E+VFD+TPFY E+GGQ GD G      G
Sbjct: 475 -----EEASEAELKTIIIDGELATTANEGQKAELVFDKTPFYGESGGQAGDRGEVRFAGG 529

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D QK+A  +F H   +  G ++  +  +L +D   R  +  NHSATH+LH AL 
Sbjct: 530 AVFRVLDTQKRAGDVFSHIGEMVTGDIKAGVKALLEVDSVRRSNIRSNHSATHILHAALR 589

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD  HS  ++  EL  IE  VN +I QN  V T+ M  + 
Sbjct: 590 NNLGDHVTQKGSLVEEDKLRFDFAHSGTLSQVELDKIEAEVNAVIRQNSEVSTKEMAPDA 649

Query: 659 AIASGAAALLGTKYNDRVRVVSV-EYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY D VRV+++ E  +GG   +S  LCGG HV  TG+I +  I SES 
Sbjct: 650 AIEAGAMALFGEKYGDSVRVLAMGEALEGGDKAYSVELCGGIHVRRTGDIAVFAITSESG 709

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+TG  A  +L G+    +S+A  LK +      RV  + ++ R L  +L 
Sbjct: 710 VSAGVRRIEAVTGAAALEYLKGKVAIARSIADQLKSTIEKAPERVAALQDQKRALENELS 769

Query: 774 HAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            AK+KL +            +I  +  ++ +   V +K+L+ ++D  +K++ SG+ + V 
Sbjct: 770 DAKKKLAMGASAGGAAAGPEEINGIKLLTRVADGVPAKDLRGLIDDAKKQLGSGVTVFVA 829

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + KA+V   VT+DL D+ +AVDL +++A  +GG GGGGRP MAQ+GGP+G+KA+ A+
Sbjct: 830 VN-DGKAAVATGVTDDLKDKISAVDLVKVAAAAVGGKGGGGRPDMAQAGGPDGSKANDAV 888

Query: 890 AGVASFLK 897
             V +FLK
Sbjct: 889 DAVRAFLK 896


>gi|126729804|ref|ZP_01745617.1| alanyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126709923|gb|EBA08976.1| alanyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 890

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/901 (49%), Positives = 578/901 (64%), Gaps = 52/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH+++PSS L+P NDPTLMF NSGMV FKN FTG EK  Y  
Sbjct: 1   MASLNDIRSTFLNYFEKQGHQIVPSSPLVPRNDPTLMFVNSGMVQFKNRFTGVEKGDYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  A++L+T+EF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAYELITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ R+Y TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRIYTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS EE G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 PEVWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS Q T +  +G   ++HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 KHDNYDTDLMRSLIEASAQATSVDPDGPGKMHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL + + +IEETL SE+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPLMHRLVPALVRQMGTAYPELSRGQAMIEETLLSEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS LG D  L G+ AFKLYDT G PLD+ QD L  +G + +DI  F+
Sbjct: 360 QTLDRGLKLLDEELSGLGDDAALPGETAFKLYDTFGFPLDLTQDALREKGRS-VDIEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++RARA   G G      +W+ + E +GAT F+GYD                  
Sbjct: 419 AAMAEQKARARAAWSGSGDAADTAVWYDIAETHGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G +V     G+K  +V +QTPFY E+GGQ+GDTG       
Sbjct: 461 -----TEQAEGQVLALVKDGALVTSLAEGEKGWIVLNQTPFYGESGGQVGDTGWL----R 511

Query: 540 RLQ-------ITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           RL+       + D QK   G +F H   V +G      +L L +D+  R  +  NHSATH
Sbjct: 512 RLEDEHEIATVEDTQKMGGGKVFAHLVKVNKGTFAKGDALALEVDHGRRSSIRANHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS   PD LRFD +H K ++++E+K++E +VN  I QN PV T
Sbjct: 572 LLHEALREALGDHVAQRGSLNAPDRLRFDFSHGKALSASEIKNVERDVNAYIRQNTPVST 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGE 704
           R+M  +DA A GA AL G KY D VRVVS+  +       DG  +S  LCGGTHV  TG+
Sbjct: 632 RLMTPDDARAIGAQALFGEKYGDEVRVVSMGAKPGSGKGADGATYSLELCGGTHVRQTGD 691

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I     + +S+  AG+RRIEA+TGQ A  HL  Q + L ++A+ +K     V  RV  + 
Sbjct: 692 IGAFVCLGDSASSAGVRRIEALTGQLALDHLAQQGQTLAAVAAEMKAPASEVPARVRTLL 751

Query: 765 EEYRKLQLIHAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           EE RKL+   A  + +L +            +I  V F++ +++ V  K+L  ++D  + 
Sbjct: 752 EERRKLESEVASLRRELAMSGGGQGAGPEAEEIGGVKFLAQVLTGVTGKDLPPLIDEHKS 811

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++ SG ++L+      KA+V   VT+DL    +AVDL + +   LGG GGGGRP MAQ G
Sbjct: 812 RLGSGAVLLI-ADAGGKAAVAAGVTDDLKGTLSAVDLVKAAVPELGGKGGGGRPDMAQGG 870

Query: 879 G 879
           G
Sbjct: 871 G 871


>gi|329890683|ref|ZP_08269026.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
 gi|328845984|gb|EGF95548.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
          Length = 881

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/905 (47%), Positives = 582/905 (64%), Gaps = 33/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++  IR+TFL++F  +GHE + S+ L+P NDPTL+F N+GMVPFK+ FTG   P Y+ 
Sbjct: 1   MTSLKQIRSTFLDYFAADGHEKVQSAPLVPQNDPTLLFVNAGMVPFKDYFTGAAVPPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLTKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIESAWGLLTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY  D++AF +WKK++G + +KIIRI TNDNFW+M ++GPCGPC+EIF+D G
Sbjct: 121 DPARLLVTVYHTDDQAFDIWKKVTGFADEKIIRIPTNDNFWAMGDSGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWN VFMQFE++N +    LPK S+DTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSPDEDGDRFVEIWNNVFMQFEKENDEIVRELPKKSVDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD+DLFK LI ASE++T  K EG    +HRVI DHLRS++FLIADG+ P+NEGRGY
Sbjct: 241 VHSNYDVDLFKSLINASEELTSTKAEGERAPSHRVIADHLRSTAFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  EMG AYPEL +A+  IE+TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVQEMGEAYPELGRAQAFIEDTLKQEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ L D   +     ++L+G  AF LYDT+G PLD+ QD    RG + +++  F 
Sbjct: 361 TTLGRGMNLFDQATTGFKAGDMLDGQTAFTLYDTYGFPLDLTQDEARRRGFS-VNVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR R+R H  G G   +   W +L++++G T+F GY+   G      + KVL   
Sbjct: 420 SAMAEQRDRSREHWKGSGQTASAGAWLALRDQHGGTEFTGYESETG------EGKVL--- 470

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                         AIV+ G     A +G+ VEV+ D+TPFY E GGQ GD G  +  G 
Sbjct: 471 --------------AIVKDGAEAASAATGETVEVLLDKTPFYGEGGGQAGDKGAFVWSGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D +K    + VH   V +G L     +  T++  +R     NHSA HL H A+  
Sbjct: 517 EGRVLDTKKHGGDLHVHTLEVTKGALAAGAVVTATVEEGSRPTTRANHSAAHLFHAAVKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q G  +  + +RFD +H+ P+T  E+  +ED VN +I QN+PV T +M  + A
Sbjct: 577 VLGAHVAQKGQMVDAERMRFDFSHNAPMTDEEIARVEDEVNAVIRQNVPVTTELMTPDAA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA+GA AL G KY D VRV+++       G +S  LCGGTHV  TG+I L  IVSE  + 
Sbjct: 637 IAAGAVALFGEKYGDEVRVLTIGRALSGPGAYSVELCGGTHVFRTGDIALFKIVSEGGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+TG+ AR  L+ Q    +SLA   K+    V  RVE +    + L+   A  
Sbjct: 697 AGVRRVEALTGEAARRFLLDQANVARSLAQGFKIQTAEVPARVEGLQASVKTLEKQVADL 756

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +   +       +I  +  M+ ++  VD K L+ V +  +K+I SG++ LVG+  
Sbjct: 757 KKQLALGGGAGANAAPEEIGGIKLMARVLDGVDGKGLRGVAEDFKKQIGSGVVALVGVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA++ +  T D+  + NA DLAR +   +GG G GG+P  AQ G P+G+KA+  +  +
Sbjct: 816 DGKAAITVAATPDMAGKVNAADLARDAVIAMGGKGAGGKPDFAQGGAPDGSKAEDGLNAI 875

Query: 893 ASFLK 897
            + LK
Sbjct: 876 RAALK 880


>gi|254465088|ref|ZP_05078499.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206685996|gb|EDZ46478.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 883

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/893 (48%), Positives = 579/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F KNGHE++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKNGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVETREYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEFD+
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKKM-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGTMVDLDMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLF+ LI+AS   T     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFRSLIEASANATNTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P+L  +MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGANDPVMHKLVPSLVQKMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD   + LGK ++L G+ AFKLYDT+G PLD+ QD L A+ +  +D   F+
Sbjct: 360 KTLDRGLKLLDEASAGLGKGDVLPGETAFKLYDTYGFPLDLTQDALRAKEIE-VDTGGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG     K++F + +  G T F+GY+                  
Sbjct: 419 AAMKAQKEQSRAGGIGLGEAADVKVYFDIVDAAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV+ G  ++ A  G  V+++ +QTPFY E+GGQ+GD+G     G 
Sbjct: 461 -----TEKAEGQIVAIVKDGAQLQSAAKGDTVQIILNQTPFYGESGGQVGDSGVLTVAGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R ++  NHSATHLLH AL  
Sbjct: 516 AARITDT-KKVEGLFLHLAEVTEGEVAVGQGAAMEVDHDRRSKIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL  +   VND I QN PV TRIM  +DA
Sbjct: 575 ALGEHVAQKGSLNAADRLRFDFSHNKAMSAEELAKVGAEVNDFIRQNTPVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              GA AL G KY D VRVVS+      +  DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRAATGKGHDGDTYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           S+  AG+RRIEA+TG  A  HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAVEHLEREAGRMAEVAAALKAQPAEVLDRLKAMMDERKALQNE 754

Query: 772 LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           + + K+++ +        +  DVN   F++  +  V  K+L+ ++D  ++ I SG+I+L+
Sbjct: 755 ISNLKQQIAMGGGSGGGAEAKDVNGKKFLAQALKGVSGKDLRGLIDKHKQNIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              ++ K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-EEDGKVAVAAGVTDDLTGEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|330993337|ref|ZP_08317272.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329759367|gb|EGG75876.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 861

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/883 (48%), Positives = 568/883 (64%), Gaps = 33/883 (3%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y   TT QK VRAGGKHNDLDNVG 
Sbjct: 1   MPSSSLVPHNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNVGY 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142
           T RHHTFFEM+GNFSFG YFK  AI+LAW L+T  F L + +L  TVY +DEEA  LW++
Sbjct: 61  TARHHTFFEMMGNFSFGDYFKAEAIELAWKLVTGTFGLPKEKLLTTVYADDEEAASLWRR 120

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIW 201
           I+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G  + GG PGS  E+G+R+ EIW
Sbjct: 121 IAGLSDDRIIRIPTSDNFWRMGDTGPCGPCSEIFYDHGPEVAGGPPGSPDEDGDRFTEIW 180

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           NLVFMQ+ +     R  LP+ SIDTG+GLER A +LQ K +NYD D F+ LI AS +VTG
Sbjct: 181 NLVFMQYFENPPGTRSPLPRPSIDTGLGLERFAAILQGKRDNYDTDTFRALILASAEVTG 240

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
              +G    +HRV+ DHLRS+SFLIADG+LP+ +GRGYVLRRIMRRAM +  ++G TEP 
Sbjct: 241 QDPDGPFNASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTTEPT 300

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+PAL  +MG AYPEL+ A+ LIE T++ E+ERF   LDRGL LL      LG    
Sbjct: 301 FYKLVPALIRQMGEAYPELVHARALIEGTMKGEEERFKAMLDRGLSLLADETERLGDGAP 360

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISFNQALEEQRSRARAHSLGLGSGT 440
           L GDVAFKLYDT G PLD+ QD L  RG +  +D+  FN A+E QR RARA   G G   
Sbjct: 361 LPGDVAFKLYDTFGFPLDLTQDAL--RGSSHNVDVAGFNAAMEVQRKRARAAWSGSGDSA 418

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           TE +WF  ++ +GAT+F+GY                        T    + V+ ++    
Sbjct: 419 TETVWFEARDTFGATEFLGY-----------------------TTETSDAEVQTVIVDNA 455

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            VE A  G KV ++ +QTPFY E+GGQ+GDTG     G+ + ITD QKK   + VH+  V
Sbjct: 456 QVESAGPGTKVALLLNQTPFYGESGGQVGDTGTITAPGLHIAITDTQKKLGDLLVHYGTV 515

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G ++  M++   +D+  R  +  +HSATHLLH A+   LG+HV+Q GS   PD LRFD
Sbjct: 516 IEGTVKPGMAVTAQVDHDRRSAIRAHHSATHLLHEAMRRRLGAHVTQKGSLNAPDRLRFD 575

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V+  +PIT  EL  IE  VN  I +N  V TR M  E+AI  GA AL G KY D VRVVS
Sbjct: 576 VSQPRPITPEELADIEAEVNARIRENTDVTTRHMTPEEAIEQGAMALFGEKYGDEVRVVS 635

Query: 681 VEYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +   + G    S  LCGGTHV  TG+I L  I SES + +G+RRIEA+TG  A++  +  
Sbjct: 636 MGGPEEGRAGWSIELCGGTHVRRTGDIGLFRITSESGVSSGVRRIEAVTGLAAQNATIAT 695

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVE-DLSCHKIADVN 795
           +E+L  +A+ L+V       R+  + EE + +  Q+   +RKL    +   S   +  + 
Sbjct: 696 EERLNQIAAMLRVPPAETPERLAVLLEERKVMERQISDLQRKLASGSQAAASIVDVGGIK 755

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
             +  + E+ +KELK + D+L+K+I SG+I+L+  + + K S+++  T DL ++ +AV L
Sbjct: 756 LDARNVGELPAKELKPLADSLRKEIGSGVIVLISTA-DGKGSIVVAATPDLGEKVDAVAL 814

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            R ++  +GG GGGGR  MAQ+GGP+  + + A+  V + L++
Sbjct: 815 VRAASTAMGGKGGGGRRDMAQAGGPDTTRVEAALEAVRAALQQ 857


>gi|329114349|ref|ZP_08243111.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696425|gb|EGE48104.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 898

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/886 (48%), Positives = 575/886 (64%), Gaps = 31/886 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IRT FLE+F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 18  MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW+L+TK F+L
Sbjct: 78  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 137

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TV+ EDE+A  LW+ I+GL   +IIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 138 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 197

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS  E+G+R++EIWNLVFMQ+ +     R  LP+ SIDTG+GLER A ++Q 
Sbjct: 198 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 257

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D F  LIQAS  +T    +G    +HRV+ DHLRS++FLIADG+LP+ +GRGY
Sbjct: 258 KRDNYDTDTFVALIQASADLTHQAADGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 317

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G TEP    LLPAL  +MG AYPEL+  + LI ET+R E+ERF 
Sbjct: 318 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 377

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL+   SHL     L GDVAF+LYDT G PLD+ QD L   G   +D+  F 
Sbjct: 378 AMLDRGLHLLEEEKSHLASGAPLPGDVAFRLYDTFGFPLDLTQDALRGSG-HDVDVKGFE 436

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR RARA   G G    E IWF  ++K+GA++F+GY                   
Sbjct: 437 DAMSVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGYS------------------ 478

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V+A++     ++EA  G +V V+ +QTPFY E+GGQ GDTG     G+
Sbjct: 479 -----TEQADGEVQAVIAGNAFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 533

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ ITD QKKA  + VH+  V  G LR  M++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 534 KVAITDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS  T + LRFDV+  +PIT  EL +IE  VN+ I +N  VVTR M  ++A
Sbjct: 594 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRENSQVVTRSMTPDEA 653

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA GA AL G KY D VRVVS+    ++    S  LCGGTHV+ TG+I    IVSES + 
Sbjct: 654 IAEGATALFGEKYGDEVRVVSMGAGADNKAPWSMELCGGTHVNRTGDIGQFRIVSESGVS 713

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AG+RRIEA+ G+ A+   +  +++L  +A+ +KVS  +   R+  + EE R++  Q+ H 
Sbjct: 714 AGVRRIEAVAGKAAQDLTVSNEQRLTQMATMMKVSVADAPERLAAVLEERRQMEKQIAHL 773

Query: 776 KRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +R+L   NV      KI      +  + E   +ELK + + + K+  + +++L+  + + 
Sbjct: 774 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 832

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           K SV+  V  +++++ +AV L R ++  +GG GGGGR  MAQ+GGP
Sbjct: 833 KGSVVAAVGPEMVEKVDAVALVRTASAAMGGKGGGGRRDMAQAGGP 878


>gi|258541879|ref|YP_003187312.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632957|dbj|BAH98932.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636014|dbj|BAI01983.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639069|dbj|BAI05031.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642123|dbj|BAI08078.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645178|dbj|BAI11126.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648233|dbj|BAI14174.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651286|dbj|BAI17220.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654277|dbj|BAI20204.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 881

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/887 (48%), Positives = 577/887 (65%), Gaps = 31/887 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IRT FLE+F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 1   MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW+L+TK F+L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TV+ EDE+A  LW+ I+GL   +IIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS  E+G+R++EIWNLVFMQ+ +     R  LP+ SIDTG+GLER A ++Q 
Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D F  LIQAS  +T    +G    +HRV+ DHLRS++FLIADG+LP+ +GRGY
Sbjct: 241 KRDNYDTDTFVALIQASADLTHQAVDGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G TEP    LLPAL  +MG AYPEL+  + LI ET+R E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL+   SHL     L GDVAF+LYDT G PLD+ QD L   G   +D+  F 
Sbjct: 361 AMLDRGLHLLEEEKSHLASGASLPGDVAFRLYDTFGFPLDLTQDALRGSG-HDVDVKGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR RARA   G G    E IWF  ++K+GA++F+GY                   
Sbjct: 420 EAMAVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGYS------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V+A++   E ++EA  G +V V+ +QTPFY E+GGQ GDTG     G+
Sbjct: 462 -----TEQADGEVQAVIAGNEFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QKKA  + VH+  V  G LR  M++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 517 KVAVTDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS  T + LRFDV+  +PIT  EL +IE  VN+ I  N  VVTR M  ++A
Sbjct: 577 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRDNSQVVTRSMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA GA AL G KY D VRVVS+    ++    S  LCGGTHV+ TG+I    IVSES + 
Sbjct: 637 IAEGATALFGEKYGDEVRVVSMGAGADNKSPWSMELCGGTHVNRTGDIGQFRIVSESGVS 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AG+RRIEA+ G+ A+   +  +++L  +A+ +KVS  +   R+  + EE R++  Q+ H 
Sbjct: 697 AGVRRIEAVAGKAAQDLTVSNEQRLTQMAAMMKVSVADAPERLAAVLEERRQMEKQIAHL 756

Query: 776 KRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +R+L   NV      KI      +  + E   +ELK + + + K+  + +++L+  + + 
Sbjct: 757 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           K SV+  V  +++++ +AV L R ++  +GG GGGGR  MAQ+GGP+
Sbjct: 816 KGSVVAAVGPEMVEKVDAVALVRAASAAMGGKGGGGRRDMAQAGGPD 862


>gi|84517390|ref|ZP_01004743.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84508754|gb|EAQ05218.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 884

 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/911 (49%), Positives = 584/911 (64%), Gaps = 42/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH ++PSS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MTSLADIRSTFLNYFEKQGHRVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTRDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF LWKKI G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFDLWKKI-GVPEDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D+ + LI+AS   T    +G    +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 KHDNYDTDVMRALIEASANATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+ AL  +MG+AYPEL Q + LIEETL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVSALVQQMGAAYPELGQGQRLIEETLMNEEIRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +D  L G+ AFKLYDT+G PLD+ QD L  +G A +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGRA-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      IWF + +  G T F+GYD L                
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADSAIWFDVADLAGPTDFLGYDSLD--------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   V   +KA+V  G +V++A  G  V++V +QT FYAE+GGQ+GD G    D  
Sbjct: 464 --------VEGQIKALVADGAMVQQA--GGAVQIVLNQTSFYAESGGQVGDAGILQTDTG 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             QITD  KK  G+F+H A V  G +       L +D   R  +  NHSATHLL+ AL  
Sbjct: 514 TAQITDT-KKVAGVFIHFATVTNGTIAVGQGAALRVDAGRRAAVQANHSATHLLNEALRE 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H++Q GS   PD LRFD +H+KP+++ EL  IE +VN +I QN  V TRIM  +DA
Sbjct: 573 TLGDHIAQRGSLNAPDRLRFDFSHTKPVSADELAQIERDVNALIRQNTRVETRIMAPDDA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  +DG         +S  LCGGTHV   GEI     + 
Sbjct: 633 RALGAQALFGEKYGDEVRVVSMGRKDGSGKGAAGNTYSLELCGGTHVRQLGEIGAFVALG 692

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +++  AG+RRIEA+TGQ A  +L  QD++L  +A+ LK    +V  RV+ + +E R L  
Sbjct: 693 DAASSAGVRRIEALTGQAALDYLRAQDQRLADVAAALKAPASDVADRVKALMDERRTLAN 752

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L +            VN   F + ++S V  K+L S++D ++  + SG+++L
Sbjct: 753 EVAQLRRELAMGGGAQGASPALQVNGIAFHAQVLSGVTGKDLPSLIDQIKTDLGSGVVLL 812

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + + KA++ + VT DL  R +AVD+ R     LGG GGGGRP MAQ GG +   A+ 
Sbjct: 813 IADTGD-KAAIAVGVTADLTTRVSAVDILRAVTPELGGKGGGGRPDMAQGGGASTQNAEA 871

Query: 888 AIAGVASFLKK 898
           AI    S L+K
Sbjct: 872 AITQAKSILEK 882


>gi|83951874|ref|ZP_00960606.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83836880|gb|EAP76177.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 888

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/914 (48%), Positives = 590/914 (64%), Gaps = 45/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL F+++N H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNEIRSTFLNFYERNDHQIVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA ++WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 NKDKLLVTVYHTDDEAAEIWKKYAGLSDDRIIRIATDDNFWSMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 181 PEIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTMRELDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS  VT    +G   ++HRVI DHLRSS+FLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHVTSQDPDGPGNIHHRVIADHLRSSAFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+RRIMRRAM +A LLG  +P+M  L+PAL T+MG A+PEL +A+ LI+ETL+ E+ RF 
Sbjct: 301 VVRRIMRRAMRHAHLLGAKDPVMHQLVPALVTQMGQAFPELGRAQSLIQETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L +   L G  AFKLYDT+G PLD+ QD L  +G   +D+  F+
Sbjct: 361 QTLDRGLRLLDDELGGLPEGAALPGQTAFKLYDTYGFPLDLTQDALREKGRE-VDVSGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IWF + E +G T F+GYD                  
Sbjct: 420 EAMAEQKAKARAAWSGSGEAADATIWFDIAESHGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G  V+ A  G  V+++ +QTPFYAE+GGQ+GDTG       
Sbjct: 462 -----TETAEGQIVALVADGAEVKSAGKGDSVQIILNQTPFYAESGGQVGDTGVIRSAEG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K A G+F+H   V  G L    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 AAKITDTRKVA-GVFIHIGEVTEGKLVAGAAAQLEVDHTRRTAIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +HSK +++ EL  +   VN+ I QN  V TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSKAMSADELDQVAREVNEYIRQNTRVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+       +  DG  +S  LCGGTHV  TG+I +  I+ 
Sbjct: 636 RDIGAQALFGEKYGDEVRVVSMGSLDGSGKGLDGTTYSIELCGGTHVRQTGDIGMFVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  +G+RRIEA+TG  AR +L  QD ++ SL   ++    ++V RV  + +E + L  
Sbjct: 696 DSASSSGVRRIEALTGDAARGYLAAQDARVASLTGEMRCKPEDLVARVRGLLDERKALTN 755

Query: 771 QLIHAKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++   +R+L           +DL   +I  V   + ++S V  K+L +++D  + ++ SG
Sbjct: 756 EVAQLRRELAMAGGSGGAASDDL--REINGVKLHAQVLSGVSGKDLPALIDEHKSRLGSG 813

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            ++L+  +   K +V   VT+DL +R +AV++ R +A  LGG GGGGR  MAQ GG + +
Sbjct: 814 AVLLIADTG-GKVAVAAGVTDDLTERLSAVEMVRAAAPALGGKGGGGRADMAQGGGADAS 872

Query: 884 KADQAIAGVASFLK 897
           KAD+AIA V + ++
Sbjct: 873 KADEAIAAVETLIE 886


>gi|254474615|ref|ZP_05088001.1| alanyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214028858|gb|EEB69693.1| alanyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 883

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/908 (48%), Positives = 587/908 (64%), Gaps = 39/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVSSSPLVPRNDPTLMFTNSGMVQFKNLFTGLETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS++E G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFLI+DG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLISDGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQSMIEETLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELADLDEGAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWAGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G  V EA +G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEAAEGQVMALVVDGAQVSEAGAGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++++D  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVSDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHARRSAIRSNHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS    D LRFD +H+K ++  E++++E  VN  I QN  V TRIM  +DA
Sbjct: 575 VLGEHVAQRGSLNADDRLRFDFSHNKALSLDEIRTVEQQVNHFIRQNSTVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+      + +DG   S  LCGGTHV  TG+I    ++ +
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKAPTGKGQDGQTWSLELCGGTHVKQTGDIGTFVVLGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  +L GQD  L   A  LK   G+V  R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFQYLTGQDNLLAQAALELKAQPGDVPERIKALLDERKALQNE 754

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +       +    I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGGVETKDIGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + A  A
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGAQDA 873

Query: 889 IAGVASFL 896
           +    +FL
Sbjct: 874 LKAAEAFL 881


>gi|259418847|ref|ZP_05742764.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345069|gb|EEW56923.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 903

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/893 (48%), Positives = 578/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 20  MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 80  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 259 THDNYETDLFKYLIEASATVTNSDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L + ++L G+ AFKLYDT G PLD+ QD L A+G+  +D   F+
Sbjct: 379 KTLDRGLKLLDEASVDLNQGDVLPGETAFKLYDTFGFPLDLTQDALRAKGVE-VDTDGFD 437

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG     K++F + +  G T+F+GY+                  
Sbjct: 438 AAMKAQKEQSRAGGIGLGDAADVKVYFDIVDAEGTTEFLGYE------------------ 479

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V+ G  VE A  G  V+++ +QTPFY E+GGQ+GDTG    +G 
Sbjct: 480 -----TEKAEGQIVALVKDGAKVETAKKGDSVQIILNQTPFYGESGGQVGDTGVLTVEGG 534

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +I+D  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 535 AARISDT-KKVEGLFLHIAEVTEGEISVGSGAAMEVDHTRRSQIRANHSATHLLHEALRN 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    + LRFD +H+K ++  +L  I   VND I QN PV TRIM  +DA
Sbjct: 594 ALGEHVAQKGSLNAAERLRFDFSHNKAVSQEDLTKIASEVNDFIRQNSPVSTRIMTPDDA 653

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+      +  DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRADTGKGADGDTYSIELCGGTHVKQTGDIGTFVILGD 713

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL  +  ++  +A  LK    +V+ R++ + +E + L   
Sbjct: 714 SASSAGVRRIEALTGAAAFDHLEREAARMAEVAGALKAQSADVMDRLKALMDERKALHNE 773

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K Q+ +   S       +I+   F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 774 ISNLKQQIAMGGGSDGGAETKEISGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 834 A-EDDGKVAVAAGVTDDLTGDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 885


>gi|255263093|ref|ZP_05342435.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255105428|gb|EET48102.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 884

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/893 (47%), Positives = 576/893 (64%), Gaps = 40/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IRT FL++++  GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MPSLNDIRTRFLDYYKSEGHEIVSSSPLVPRNDPTLMFANSGMVQFKNLFTGAESRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+++T+E  +
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAINYAWNMVTRELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY +D+EA  +WKK++GLS DKIIRI T+DNFW M  TGPCGP SEIF+D G
Sbjct: 121 NKDKLVVTVYHDDDEAAAIWKKVAGLSDDKIIRIATDDNFWMMGSTGPCGPSSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRSPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLIRALIEASANATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +PLM  L+P+L  +MG+AYPEL QA+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHVHLLGAQDPLMHRLVPSLVGQMGAAYPELGQAQALIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L  L +   L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 361 QTLERGLRLLDDELDGLAEGTDLPGQAAFKLYDTYGFPLDLTQDALREKGR-GVDSDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IW  + ++ GAT F+GYD                  
Sbjct: 420 EAMAEQKAKARAAWSGSGETVDATIWLDIADRDGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T    + + AIV+ G  ++ A  G  V++V +QTPFY E+GGQ+GDTG    DG+
Sbjct: 462 -----TETAEAQITAIVKHGAEIKSATVGDTVQIVVNQTPFYGESGGQVGDTGVVHADGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD +K A G+F+H A + +G      ++ L +D   R Q+  NHSATHLLH AL  
Sbjct: 517 SARVTDTRKTA-GVFIHIAEITKGTFEVGTAVELNVDPTRRSQIRANHSATHLLHEALRQ 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H K ++  +L+S+E  VN  I QN  V TRIM  +DA
Sbjct: 576 SLGDHVAQRGSLNAPDRLRFDFSHGKALSLEQLQSVEAEVNAYIRQNTGVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  +        G  +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGAQPNSGRGSLGNTYSLELCGGTHVGRTGDIGAFVMLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  +G+RRIEA++GQ A  +L  QD +L  +AS LK    +   RV+ + +E + L  
Sbjct: 696 DSASSSGVRRIEALSGQAAMDYLRTQDGRLAEVASVLKTPAADAPARVKALMDERKALAN 755

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L ++     +  +   +    F++ ++S V  K+L +++D  + +I SG ++
Sbjct: 756 EVAQLRRELAVSGGGQTDAPAAEDVNGTKFLAQVVSGVTGKDLPALVDDYKAQIGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           L+      KA+V   VT D  +  +AVDL R +   LGG GGGGRP MAQ GG
Sbjct: 816 LI-ADAGGKAAVAAGVTADKAEAVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 867


>gi|163736400|ref|ZP_02143819.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161390270|gb|EDQ14620.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 883

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/893 (49%), Positives = 577/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS++E G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELSGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G  V EA  G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEAAEGQIMALVVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K ++  EL+ +  +VN  I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSGEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+      + +DG  +S  LCGGTHV  TG+I    I+S+
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEVANSLKAQPEEVMDRLKALMDERKALQNE 754

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +           ++    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|254460942|ref|ZP_05074358.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206677531|gb|EDZ42018.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 887

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/896 (48%), Positives = 579/896 (64%), Gaps = 41/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH ++PSS L+P NDPTL+F NSGMV FKN+FTG E   Y  
Sbjct: 1   MASLNDIRSTFLNYFEKQGHAIVPSSPLVPRNDPTLLFANSGMVQFKNLFTGLESRDYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT EF++
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKAEAIAYAWELLTVEFNI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKERLLVTVYHTDDEAADIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFEDGTMKPLEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T +  +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 KHDNYDTDLMRSLIEASADATSVDPDGPTKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+A+PEL QA+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVRQMGAAFPELGQAQALIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD  L  L + ++ +GD AFKLYDT G PLD+ QD L  +G    D+  FN
Sbjct: 361 KTLERGLKLLDDELVGLPEGQVFSGDAAFKLYDTFGFPLDLTQDALREKGREA-DVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E Q+++ARA   G G      IWF + + +GAT F+GYD                  
Sbjct: 420 QAMEAQKAKARAAWSGTGEAADSAIWFDIVDAHGATDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      +  +V  G   + A +GQ+V+++ +Q+PFYAE+GGQ+GD G    +  
Sbjct: 462 -----TETAEGQIATLVMDGAEADAAKAGQEVQIILNQSPFYAESGGQVGDKGIIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++D  KK++G+ +H A V+ G +    + +L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 TAVVSDT-KKSQGVIIHTATVQDGEIIKGSAAILEVDHGRRTAIRANHSATHLLHEALRA 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +HS  ++S +L  +E +VN  I QN PV TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSAALSSEDLIKVEKDVNTYIRQNAPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  +       +G  +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTQAGSGKGSNGQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RRIEA+TG+ A  H+  QD +L  +AS LK    +V  RV+ + EE + L  
Sbjct: 696 DSASSAGVRRIEALTGEAALDHMRAQDLRLAKVASDLKAQAADVPARVKALLEERKALSN 755

Query: 771 QLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L ++             +  +NF++ +++ V  K+L +++D  +  I SG +
Sbjct: 756 EVAQLRRELAMSGGAGQGGGAEAEVVNGINFVAQVLTGVSGKDLPALIDEHKAAIGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L+      KA+V   VT+D +   +AVDL + +   LGG GGGGR  MAQ GG +
Sbjct: 816 LLI-ADAGGKAAVAAGVTDDTVATVSAVDLVKAAVVELGGKGGGGRADMAQGGGKD 870


>gi|89054478|ref|YP_509929.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|122498736|sp|Q28QV8|SYA_JANSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88864027|gb|ABD54904.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1]
          Length = 884

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/893 (49%), Positives = 583/893 (65%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL++F + GH ++PSS L+P NDPTLMF NSGMV FKN+FTG EK  Y  
Sbjct: 1   MTSLNDIRSTFLDYFGRQGHAVVPSSPLVPRNDPTLMFVNSGMVQFKNLFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+TK+F L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRYAWELITKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKARLYVTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+EE G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 EHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFADGTMVPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D  + L++AS   +    +G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDTMRALMEASAHASSTDLDGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL ++MG AY EL QA+ LI ETL+ E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMYRLVPALVSQMGQAYSELGQAQALITETLKLEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ L +D  L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDEVAKLPEDGNLPGAAAFKLYDTYGFPLDLTQDALREQGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + EK G T+F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWSGSGDAADATIWFDIAEKNGVTEFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G  V++  S Q V  V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 461 -----TEVAEGQVLALVVDGARVDKVASNQDVIFVTNQTPFYAESGGQVGDSGTIRTETG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L +T+ +K A G+F+H   V  G ++      L++D++ RR +  NHSATHLL+ AL  
Sbjct: 516 VLHVTETRKVA-GVFLHVGQVTEGTIKVGQGASLSVDHERRRYICANHSATHLLNEALRW 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            +G  V Q GS  + D LRFD +H+KP+T+ EL  +E  VND+I +N  V TR+M  +DA
Sbjct: 575 AIGDSVVQRGSLNSRDRLRFDFSHNKPMTADELAQVEAEVNDLITRNTAVETRVMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+ +  G         +S  LCGGTHV  TG+I    I+S
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGHHAGSGKGLDKDTYSIELCGGTHVKRTGDIGPFVILS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES+  AG+RRIEA+T Q A  +L  Q+E++  LA+ L     +V+ RV+ + ++ +KL  
Sbjct: 695 ESASAAGVRRIEALTNQTASFYLSEQNERMGQLAAELNTQAADVLDRVKALKDDRKKLEN 754

Query: 771 QLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           ++   +R+L +           +  VNF +  +S V  K+L  ++D  + ++ SG ++L+
Sbjct: 755 EVAQLRRELAMAGGTSAPEAASVNGVNFHAQALSGVTGKDLAGIVDEHKARLGSGAVLLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
                 KA+V   VTEDL DR +AVDL R +   LGG GGGGRP  AQ GG +
Sbjct: 815 -ADAGGKAAVAAGVTEDLTDRLSAVDLVRAAVAELGGKGGGGRPDFAQGGGKD 866


>gi|83944501|ref|ZP_00956954.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83844703|gb|EAP82587.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 886

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/895 (48%), Positives = 566/895 (63%), Gaps = 40/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+TVY  D+EA ++WKK++GL  D+IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G+ AFKLYDT+G P+D+ QD L  +    +D+  FN
Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G      IWF + EK G T F+GYD                  
Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATIWFDVAEKSGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G  V E   G  V++  +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+F+H   V  G ++T  + VL +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 VVTVTDTRKTA-GVFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD +H+ P+T+ +L ++E+ VN  I QN  V TRIM  +DA
Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHPMTADQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  E G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +SS  +GIRRIEA+TG  A   L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 771 QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L +    +    +  ++  + F++ +++ V  K+L +++D  + K+ SG ++
Sbjct: 756 EVAQLRRELAMSGGGDASAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L+    + KA+V   VT DL    +AVD+ +     LGG GGGGRP MAQ G  +
Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKD 869


>gi|126737803|ref|ZP_01753533.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126721196|gb|EBA17900.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 883

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/893 (48%), Positives = 576/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y+ 
Sbjct: 1   MATLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFTNSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKE  +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITKELVV 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++W+KI G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKERLYTTVYHTDDEAFEIWRKI-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNEKFADGSMIDLEMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK LI+AS  VT     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFKSLIEASADVTSTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGAKDPVMHKLVPALVQKMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD   + + K + L+G+ AFKLYDT+G PLD+ QD L A+ +  +D   F+
Sbjct: 360 KTLDRGLKLLDDASADMDKGDTLSGETAFKLYDTYGFPLDLTQDALRAKEIE-VDTQGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ ++RA  +GLG     K++F + +  G T+F+GY+                  
Sbjct: 419 AAMKEQKEKSRAGGIGLGEAADVKVYFDILDASGPTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV+ G  VE A  G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 461 -----TEKAEGQIAAIVKDGAKVESAGRGETVQIILNQTPFYGESGGQVGDSGVLTVEGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++D  KK EG+F+H A V  G +   +   + +D++ R Q+  NHSATHLLH AL  
Sbjct: 516 TAVVSDT-KKVEGLFLHIAEVTEGQIAVGLGAAMEVDHKRRSQIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL  +   VND I QN  V TRIM  +DA
Sbjct: 575 ALGEHVAQKGSLNADDRLRFDFSHNKAMSAGELVKVGAEVNDFIRQNTEVTTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              GA AL G KY + VRVVS+      +  DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RDLGAQALFGEKYGEEVRVVSMGKAETGKGHDGQTYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A ++L  +  ++  +A  LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAYAYLEREASRMAEIAGALKAQPAEVMDRLKAMMDERKALQNE 754

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K Q+ +           +I    F++  +  V  K+L+ ++DA ++ I SG+I+L+
Sbjct: 755 ISNLKQQVAMGGGAAGGSEAKEIGGKKFLAQALQGVSGKDLRGLIDAHKQNIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               + K +V   VTEDL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-EDDGKVAVAAGVTEDLTSDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|163741065|ref|ZP_02148457.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385418|gb|EDQ09795.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 883

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/893 (48%), Positives = 578/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS++E G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++  G  V EA  G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEAAEGQIMALLVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL+ +  +VN  I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSAEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+      + +DG  +S  LCGGTHV  TG+I    I+S+
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEIANSLKAQPEEVMDRLKALMDERKALQNE 754

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +           ++    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|83955444|ref|ZP_00964075.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83840088|gb|EAP79263.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 886

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/895 (47%), Positives = 565/895 (63%), Gaps = 40/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+TVY  D+EA ++WKK++GL  D+IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G+ AFKLYDT+G P+D+ QD L  +    +D+  FN
Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G      +WF + EK G T F+GYD                  
Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATVWFDVAEKSGTTDFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A++Q G  V E   G  V++  +QTPFYAE+GGQ+GDTG    D  
Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+F+H   V  G ++T  + VL +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 VVTVTDTRKTA-GVFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD +H+  +T+ +L ++E+ VN  I QN  V TRIM  +DA
Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHAMTTDQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  E G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +SS  +GIRRIEA+TG  A   L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 771 QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L ++    +      ++  + F++ +++ V  K+L +++D  + K+ SG ++
Sbjct: 756 EVAQLRRELAMSGGGDAGAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L+    + KA+V   VT DL    +AVD+ +     LGG GGGGRP MAQ G  +
Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKD 869


>gi|260427849|ref|ZP_05781828.1| alanyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260422341|gb|EEX15592.1| alanyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 906

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/895 (48%), Positives = 571/895 (63%), Gaps = 43/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F+K GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 18  MQSLNDIRSTFLGYFEKQGHEVVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T+E D+
Sbjct: 78  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKSEAIPFAWELVTRELDI 137

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EA ++WKK +G+  D+IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 138 DPKRLLVTVYHTDDEAAEIWKK-TGVPEDRIIRIATSDNFWMMGPTGPCGPCTEIFFDHG 196

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS EE G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 197 DKYWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRRELAAQSIDTGMGIERVAALLQG 256

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS  VT    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 257 TNDNYSTDLIRSLIEASADVTSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 316

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 317 VLRRIMRRAMRHAHMLGSKDPVMYRLVPALVRQMGAAYPELVRAQPLIEETLKLEETRFK 376

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G  AFKLYDT+G PLD+ QD L  R    +D   F+
Sbjct: 377 QTLDRGLKLLDEELVSLPAGASLPGATAFKLYDTYGFPLDLTQDALRERERT-VDTDGFD 435

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + +++GAT F+GYD                  
Sbjct: 436 AAMSEQKAKARAAWSGTGEAADLAIWFEIADQHGATDFLGYD------------------ 477

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGD 537
                T      +  +V+ G  VE   +G+   VV +QTPFY E+GGQ+GDTG    + D
Sbjct: 478 -----TETAEGQMLTLVRDGVEVEALEAGETGWVVLNQTPFYGESGGQVGDTGFLRRLED 532

Query: 538 GIRL-QITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              + ++TD QK   G I  H   V +G      ++ L +D++ R  +  NHSATHLLH 
Sbjct: 533 EHDMAEVTDTQKMGGGKITAHQVTVRQGRFVKGDAVALEVDHKRRGMIRANHSATHLLHE 592

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   PD LRFD +H+K +T+ E+  +E  VN  I QN PV TRIM 
Sbjct: 593 ALRRALGPHVAQRGSLNAPDRLRFDFSHAKALTAEEIAQVETEVNAFIRQNAPVTTRIMT 652

Query: 656 REDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+       +  DG  +S  LCGGTHV  TG+I   
Sbjct: 653 PDDARAIGAQALFGEKYGDEVRVVSMGELAGSGKGGDGKTYSLELCGGTHVRQTGDIGTF 712

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SES+  AG+RRIEA+TG+ A + L G+D  L  +   LK    + V RV  + +E R
Sbjct: 713 ALTSESASAAGVRRIEALTGEAAMAELRGRDHALSRIEGLLKAHGPDAVARVAALLDERR 772

Query: 769 KL--QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L  ++   +R L +     E      +  V F++ ++S V  K+L  ++D  + ++ SG
Sbjct: 773 RLDNEVAQLRRDLAMAGGPGEGPELRDVGGVPFVAQVLSGVQGKDLPPLIDEHKARLGSG 832

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            ++L+  +   K +V   VTEDL    +AVDL + + + LGG GGGGRP +AQ G
Sbjct: 833 AVLLIADTG-GKVAVAAGVTEDLTGNVSAVDLVKAAVEALGGKGGGGRPDLAQGG 886


>gi|254455521|ref|ZP_05068950.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082523|gb|EDZ59949.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 888

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/913 (46%), Positives = 615/913 (67%), Gaps = 48/913 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ IR TFL++F+KN H ++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  YQ  T
Sbjct: 5   SLNEIRNTFLKYFEKNDHRIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AWDL+T++F +D+
Sbjct: 65  TSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIHYAWDLITRDFGIDK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY+TVY ED+EAF  WKKI+G + D+IIRI T+DNFWSM ETGPCGPCSEIF+D G+ 
Sbjct: 125 NRLYVTVYHEDDEAFNFWKKIAGFNDDRIIRIATSDNFWSMGETGPCGPCSEIFYDHGDH 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GGLPG+  E+G+R+IEIWNLVFMQFEQ +K++R  LPK S+DTGMGLER+A +LQ   
Sbjct: 185 LAGGLPGTKDEDGDRFIEIWNLVFMQFEQISKEKRIDLPKPSVDTGMGLERIAALLQGTH 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ D FK +I ++ ++  +K + +N+ + RVI DHLR+SSFLIA+G+LP+NEGRGYVL
Sbjct: 245 DNYETDHFKKIINSASEILKVKSDNSNLSSFRVIADHLRASSFLIAEGVLPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR M ++ LLG  EP+  +L   L  EM   YPEL++A+ LI+ETL+ E+E+F   
Sbjct: 305 RRIMRRGMRHSHLLGSNEPVFFNLFETLRDEMKGNYPELVRAESLIKETLKMEEEKFLVL 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           LDRG+ +L+  +S +  D++L G+VAFKLYDT+G PLD+ +DIL  + ++ ID   F   
Sbjct: 365 LDRGIKILNEEISKI--DKVLPGEVAFKLYDTYGFPLDLTEDILRNKSMS-IDSEKFQSL 421

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++E R  A+ +  G G    E +WF +K+K GAT+F+GY+                    
Sbjct: 422 MKESRELAKKNWKGSGDAAVEDVWFGIKDKLGATEFLGYE-------------------- 461

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
              TN     V ++++  + V+E  +G +  ++ +QTPFY E+GGQ+GDTG   G+  + 
Sbjct: 462 ---TNQAEGAVLSLLKDNKEVDELKNGDEGMIIVNQTPFYGESGGQVGDTGEIAGNDFKF 518

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++TDVQKK   +FVH+  V  G ++ + ++ L I+ + R      HSATHLLH +L  +L
Sbjct: 519 EVTDVQKKLGDLFVHYGKVINGSIQLKDNVELKINVERRDDTRAYHSATHLLHESLRRVL 578

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS + P  LRFD +H KPI + E+  IE  VN+++++   V TR+M  ++A+ 
Sbjct: 579 GKHVTQKGSLVEPSRLRFDFSHMKPIQTEEIDKIEGFVNNMVSKKSDVKTRLMTPDEAVE 638

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA AL G KY + VRV+S+  +DG   S+ LCGGTHV +TG+I    IVS+SSI AG+R
Sbjct: 639 NGALALFGEKYGEEVRVLSMGDDDGSYFSTELCGGTHVRNTGDIGKFKIVSQSSIAAGVR 698

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQ--GNVVGRVEEIW------EEYRKLQLI 773
           RIEA+  ++   +L  + EKL +++S  K  Q   N+  ++ E+       E  +++ + 
Sbjct: 699 RIEALRDKQLEDYLNNK-EKLSNISS-EKNDQIINNLSEQITELGGKPSLDESDQRILIK 756

Query: 774 HAKRKLQ---LN--VEDLSCHKIAD--VNFMSHIISEVD---SKELKSVMDALQKKIQSG 823
           +  ++L+   +N  +ED + + I D  +N +      VD    KEL+ ++D  +K++  G
Sbjct: 757 NLTKQLETISVNSILEDKTKNIIKDEQINGIKIRFQNVDGLPPKELRKLVDKGKKELSEG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+++   +K+ K  + + VT+ L ++F+AV   +  ++++GG GGGGR   AQ+GG + +
Sbjct: 817 IVIVFA-AKDDKVGIAVGVTDTLTNKFDAVKFVKTGSEIIGGQGGGGRKDFAQAGGQDKS 875

Query: 884 KADQAIAGVASFL 896
           K D+A   + + +
Sbjct: 876 KIDEAFEKLKTLI 888


>gi|163794125|ref|ZP_02188098.1| Alanine--tRNA ligase [alpha proteobacterium BAL199]
 gi|159180739|gb|EDP65258.1| Alanine--tRNA ligase [alpha proteobacterium BAL199]
          Length = 889

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/900 (48%), Positives = 583/900 (64%), Gaps = 36/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR  FL++F  +GH  + SS L+P NDPTLMFT +GMV FKN+FTG EK  Y  
Sbjct: 1   MATTNDIRRVFLDYFAAHGHTAVESSPLVPRNDPTLMFTTAGMVQFKNVFTGAEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T++F L
Sbjct: 61  AATAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIEYAWNLITRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDE+A  LW+KI+GL  D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYSEDEDAAALWRKIAGLPDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R++EIWNLVFMQFEQ  K ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PHIAGGPPGSPDEDGDRFMEIWNLVFMQFEQITKDERRSLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI+AS   +  + +G   V+HRV+ DHLR+S+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTMRALIEASAHASNTEPDGPFKVSHRVVADHLRASAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G TEPLM  LLP L  +MG AYPEL +A+ LI  TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIMGCTEPLMHRLLPTLVRDMGGAYPELGRAQALITGTLQLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL  L+     LG  + L G+VAFKLYDT+G PLD+  DIL  +G   +D   F+
Sbjct: 361 DTLGRGLKHLEEATGKLGDSQALPGEVAFKLYDTYGFPLDLTADILRGQGRT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ AR    G G   T+ +WF ++EK GAT+F+GYD                  
Sbjct: 420 TAMDAQRAAARKAWTGSGEAATDAVWFEVREKTGATEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGD 537
                T      V A++  G+ V++A  G +V VV +QTPFY E+GGQ+GDTG   AI  
Sbjct: 462 -----TTAAEGQVTALLVDGKPVQKAELGVEVLVVVNQTPFYGESGGQVGDTGTIRAIDG 516

Query: 538 GIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           G   + + D Q+K   +FVH  ++  G L    ++ LT++ + R +   NHSATHL+H A
Sbjct: 517 GTAVVAVVDTQRKLGDVFVHRGMLSGGALSVGDAVQLTVETERRDRTRANHSATHLMHEA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG HV+Q GS + P+ +RFD +H   I   +L  +E  VN  +  N  V TR+M  
Sbjct: 577 LRQRLGEHVAQKGSMVAPERMRFDFSHPASIAREDLAWVEAEVNRRVRGNSEVTTRLMTP 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + AI  GA AL G KY D VRVVS+    +  +    S  LCGG HV  TG+I L  IV 
Sbjct: 637 QAAIDEGAMALFGEKYGDEVRVVSMGGSADKANRAAWSVELCGGIHVRRTGDIGLFKIVG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ AG+RRIEA+TG  A   +  ++  L   A+ LK +  ++  RV  + EE R+L+ 
Sbjct: 697 ESAVAAGVRRIEAVTGSGALDWIGAREAALGEAAAELKTTPEDLPARVHALVEERRRLER 756

Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + + +L           K+A + + +  +  V ++ELK + DAL+K+I SG++ +V 
Sbjct: 757 ELVETRKKLAAGGGAAGEVKKVAGLTYAARALEGVPARELKGLADALKKEIGSGVVAVVS 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E KAS+++ VT DL  R +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ ++A  A+
Sbjct: 817 -GDEGKASLVVGVTADLTGRISAVDLVRVGSEALGGKGGGGRPDMAQAGGPDASQAQAAL 875


>gi|84686864|ref|ZP_01014748.1| alanyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665061|gb|EAQ11541.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 882

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/891 (48%), Positives = 577/891 (64%), Gaps = 40/891 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+KNGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MASLNDIRSTFLSYFEKNGHTVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+EF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIPFAWELITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  ++IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   TG+   G++ V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 240 SHDNYDTDLFKALIEASAHATGVDPYGDHNVHHRVIADHLRSTSFLMADGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L  +MG AYPEL QA+ +IEETL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPELVRQMGQAYPELGQAQSMIEETLLTEETRFQ 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L+ L +   L G+ AFKLYDT G PLD+ QD L  +    +D   F+
Sbjct: 360 ATLDRGLKLLDEELAKLPEGAALPGEAAFKLYDTFGFPLDLTQDALREKDRL-VDTEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +W+ + E+ G T+F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWSGSGEAADATVWYDIAEEKGTTEFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+V  G+  ++  +G  V++V +QTPFYAEAGGQ+GDTG    +  
Sbjct: 461 -----TEKAEGQIVALVADGDKTDKVDTG-SVQIVVNQTPFYAEAGGQVGDTGTITTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++TD  KK  G+F+H A V  G +       LT+++  R  +  NHSATHLLH AL  
Sbjct: 515 KARVTDT-KKVAGVFIHFAEVVEGSIERGQGAELTVEHDRRSAIRANHSATHLLHEALRE 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +T+ E+  +E +VN  + QN PV TRIM  +DA
Sbjct: 574 ALGDHVAQRGSLNAPDRLRFDFSHNKALTADEIGRVERDVNAYVRQNTPVETRIMAPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG------VHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+     G       +S  LCGGTHV  TG+I    + +E
Sbjct: 634 RALGAQALFGEKYGDEVRVVSMGRAATGKGVDKETYSIELCGGTHVKRTGDIGAFVLTAE 693

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S+  AG+RRIEA+TG+ A   L  ++  +  +   LKVS+ +V+ R++ + +E + L  Q
Sbjct: 694 SASSAGVRRIEALTGEAAMGELRRREMLMSEVEGLLKVSEQDVLTRLQALLDERKTLAGQ 753

Query: 772 LIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   +R+L ++          ++  V F +  ++ V  ++L  ++D  + ++ SG ++L+
Sbjct: 754 VDQLRRELAMSGGAGAGPDAEQVNGVAFFAQSLTGVSGRDLPPLIDEHKARLGSGAVLLI 813

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               + KA+V   VT DL D  +AVDL R +   LGG GGGGRP MAQ GG
Sbjct: 814 A-DVDGKAAVAAGVTPDLTDTVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 863


>gi|119713374|gb|ABL97437.1| alanine-tRNA ligase [uncultured marine bacterium EB80_69G07]
          Length = 888

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/913 (45%), Positives = 598/913 (65%), Gaps = 48/913 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ IR+TFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  YQ  T
Sbjct: 5   SLNEIRSTFLKYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKER I+LAW+L+TK+F LD+
Sbjct: 65  TSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKERGIELAWNLITKDFGLDK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY+TV+ ED+EAF  WKKI+G S D+IIRI+T+DNFWSM ETGPCGPCSEIF+D G+ 
Sbjct: 125 NRLYVTVFHEDDEAFNFWKKIAGFSDDRIIRISTSDNFWSMGETGPCGPCSEIFYDHGDH 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GGLPG+  ++G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ   
Sbjct: 185 LKGGLPGTKDQDGDRFIEIWNLVFMQYEQVSKDKRIDLPKPSVDTGMGLERIAALLQGTH 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY  D FK LI +   VT +K   NNI + RVI DHLR+SSFL+A+G+LP+NEGRGYVL
Sbjct: 245 DNYQTDHFKKLISSISDVTKVKQADNNISSFRVIADHLRASSFLLAEGVLPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR M ++ LLG  EP+   +  +L  EM   YPEL ++K LI+ETL+ E+E+F   
Sbjct: 305 RRIMRRGMRHSHLLGSKEPIFYKIFESLKNEMSGNYPELERSKSLIKETLKMEEEKFLVL 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           LDRG+ +L+  +S +  D++L+GDVAFKLYDT+G PLD+ +DIL  + L  +D   F++ 
Sbjct: 365 LDRGIKILNDEISKI--DKVLSGDVAFKLYDTYGFPLDLTEDILKNKSLK-VDHQKFDEL 421

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +++ +  A+ +  G G  + E IWF +K+K G T+F+GY+                    
Sbjct: 422 MKKSKELAKKNWKGSGDSSEEAIWFLIKDKTGPTEFLGYE-------------------- 461

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
              +N    +V  +++  +  +   +G++  ++ +QTPFY E+GGQLGD G  +      
Sbjct: 462 ---SNQSEGVVLNLIKNNQESKSLATGEEGMIITNQTPFYGESGGQLGDKGTIVSGNSVF 518

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++ D QKK   +FVH+  V+ G ++    + + ID + R  L   HSATHLLH +L   L
Sbjct: 519 EVEDTQKKLGDLFVHYGSVKTGEIKINDVVEMKIDVERRNNLKAYHSATHLLHESLRRTL 578

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS + PD LRFD +H KPIT+ EL++I+  VN+ +     V TRIM  + AI 
Sbjct: 579 GKHVMQKGSLVAPDRLRFDFSHMKPITNEELETIDKLVNEYVKNGSEVTTRIMTPKAAIE 638

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA A  G KY + VRVVS+  E     S+ LCGGTHV +TG+I     +S+SSI AG+R
Sbjct: 639 KGALAFFGEKYGEEVRVVSMGKEKDAYFSTELCGGTHVKNTGDIGKFKTISQSSIAAGVR 698

Query: 722 RIEAITGQRARSHLMGQ-----------DEKLKSLASFL-------KVSQGNVVGRVEEI 763
           R+EA+  ++    +  +           +E +K L+S +       KV   ++   ++ +
Sbjct: 699 RVEALRDKQLEDFIKNKEKLSTLSVQKDEETIKDLSSQIIKLGGKPKVDNKDLKEIIKNL 758

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++  +L +    +    N+  ++  KI D+      + ++  K+L+ ++D+ +K++  G
Sbjct: 759 SKQLEQLNVNSVLQDKTKNI--INDQKIKDIKVRFQKVQDLPPKDLRKLVDSGKKELGDG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+++   S E K  + + +TE L+D+++AV  A+L ++++GG GGGGR   AQ+GG + +
Sbjct: 817 IVIVFA-SSEDKVGLGVGITEKLVDKYDAVKFAKLGSEIIGGKGGGGRKDFAQAGGQDKD 875

Query: 884 KADQAIAGVASFL 896
           K D+A   + + +
Sbjct: 876 KIDEAFEKLKALI 888


>gi|86138306|ref|ZP_01056880.1| alanyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85824831|gb|EAQ45032.1| alanyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 883

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/893 (49%), Positives = 576/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   YQ 
Sbjct: 1   MATLNDIRSTFLNYFAKQGHEIVDSSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF +WKK+ G+  D+IIRI T DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLLTTVYHTDDEAFAIWKKL-GVPEDRIIRIDTADNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWN+VFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEKFEDGSMTPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT     G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKSLIEASADVTSSDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL QA+ +IEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGQAQSMIEETLKLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  +S L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLERGLKLLDDEVSGLDEGAPLPGSAAFKLYDTFGFPLDLTQDALREKGRE-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF + +K+GAT F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWAGSGEAADSTVWFDIADKHGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V+ G  V EA  G KV++V +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 461 -----TEIAEGQVVALVKDGGEVSEAGLGDKVQLVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +Q++D +K A G+F+H   V  G++       L +D   R  +  NHSATHLLH AL  
Sbjct: 516 LVQVSDTKKSA-GVFIHIGQVVEGLVTAGAPAQLVVDPTRRSAIRANHSATHLLHEALLE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K ++ AEL  +  +VN  I QN PV TRIM  +DA
Sbjct: 575 ALGEHVAQRGSLNADDRLRFDFSHTKALSDAELCQVSADVNAFIRQNTPVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED------GGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+   D      G  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKADTGKGQSGDTYSIELCGGTHVRQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL     ++  +A  LK   G+V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAFEHLQRTAGQMAEIAGTLKAQPGDVMDRLKSMMDERKALQNE 754

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K QL +       +   +I    F++  +  V  K+L++++DA ++ I SG+I+L+
Sbjct: 755 ISTLKQQLAMGGGAGGGVEAKEIGGKKFLAQALEGVSGKDLRALIDAHKQSIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              +  K +V   VT+DL+   +AVD+ R +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-EEGGKVAVAAGVTDDLIGDVSAVDVLRAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|110679927|ref|YP_682934.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|123065511|sp|Q165U5|SYA_ROSDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109456043|gb|ABG32248.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 885

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/893 (48%), Positives = 574/893 (64%), Gaps = 43/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+T+E  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLVTRELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+T+Y  DEEA  +WKK+ G+  D+II I TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLYVTIYHTDEEAAAIWKKV-GVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLAAQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL QA+ +I +TL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMIIQTLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  LS LG+ + L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 360 QTLERGLKLLDDELSALGEGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      IWF + +  G T F+GYD                  
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADAAIWFDVADAQGTTDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538
                T      + A+VQ G   + A +G+ V++  +QTPFYAE+GGQ+GDTG     +G
Sbjct: 461 -----TEVAEGQIVALVQGGTATQTAKAGETVQIALNQTPFYAESGGQVGDTGVIKTANG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   +TD +K A+ +FVH A V  G L    +  LT+D   R  +  NHSATHLLH AL 
Sbjct: 516 V-ANVTDCRKTAD-VFVHMAKVTEGALSVGEAAQLTVDPARRTAIRANHSATHLLHEALR 573

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS    D LRFD +H++ ++  EL  +E +VN  I QN PV TRIM  + 
Sbjct: 574 EALGDHVAQRGSLNAEDRLRFDFSHTQALSHEELARVEADVNAYIRQNAPVETRIMTPDA 633

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIV 711
           A   GA AL G KY D VRVVS+  ++G         +S  LCGGTHV  TG+I     +
Sbjct: 634 ARELGAQALFGEKYGDEVRVVSMGRKEGSGKGLSGDTYSLELCGGTHVRQTGDIGAFVTL 693

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            +S+  AG+RRIEA+TG  A  HL  QD++L ++A+ LK    +V  RV  + EE R L 
Sbjct: 694 GDSASSAGVRRIEALTGAAALQHLRAQDQRLAAVAADLKAQLADVPERVRSLLEERRALS 753

Query: 771 -QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            ++   +R+L ++    S       +A   FM+ ++S V  K+L  ++D +++++ SG++
Sbjct: 754 NEVAQLRRELAMSGGGGSAAPDVKDVAGTPFMAQVLSGVTGKDLPGLVDQMKEQMGSGVV 813

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +L+    + KA+V   VT+DL  + +AVD+ + S   LGG GGGGRP MAQ G
Sbjct: 814 LLIA-DADGKAAVAAGVTKDLTAKLSAVDIVKASVAALGGKGGGGRPDMAQGG 865


>gi|294677289|ref|YP_003577904.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476109|gb|ADE85497.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 884

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/892 (49%), Positives = 575/892 (64%), Gaps = 41/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL FF+KNGH ++ SS L+P NDPTLMFTNSGMV FKN FTG EK  Y  
Sbjct: 1   MPSLNDIRSTFLAFFEKNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEKAITYAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK+SGL+ ++IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKSKLLVTVYHTDDEAAAIWKKVSGLTDERIIRIPTKDNFWQMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSKDEDGDRFIEIWNNVFMQNEQFEDGSMVELEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSADPDGAGKVHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  +A +LG  +P+M  L+PAL  +MG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRILRRAARHAHMLGAKDPVMHKLVPALVRQMGAAYPELVRAQALIEETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL+RGL LLD  L+ L +   L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 VTLERGLKLLDDELAALPEGAELPGPAAFKLYDTYGFPLDLTQDALREKGRT-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQ+++ARA   G G  T  K+WF + E+ G T+F+GYD                  
Sbjct: 420 AAMEEQKAKARASWSGSGEATDAKLWFEIAERAGVTEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      ++A+V +G  V EA     V++V +QTPFYAE+GGQ+GD G    D  
Sbjct: 462 -----TETAEGQIQALVIEGAEVTEATGA--VQIVVNQTPFYAESGGQVGDHGIIRTDSA 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ITD  KK  G+F+H   V  G +       L +D+  R  +  NHSATHLLH AL  
Sbjct: 515 EIRITDT-KKVAGVFIHIGEVVEGKVTRGQPAKLEVDHARRSAIRANHSATHLLHEALRR 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H K +T+ EL ++E  VN  I QN PV TRIM  +DA
Sbjct: 574 ALGDHVAQKGSLNAEDRLRFDFSHGKAMTAEELMTVEAEVNAFIRQNTPVETRIMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+       +  DG  +S  LCGGTHV  TG+I     + 
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGELLGSGKGHDGRTYSLELCGGTHVKRTGDIGAFVALG 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES+  AG+RR EA+TGQ A   L  Q+ +L  +A  LK S   V  RV+ + EE + L  
Sbjct: 694 ESASSAGVRRFEALTGQAALDWLKAQNARLAEVAGLLKTSPAEVADRVKALAEERKALAN 753

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L +        ++ ++    F++ ++S V  K+L +++D L+ K+ SG +++
Sbjct: 754 EVAQLRRELAMGGGAAGGQEVIEIKGLRFIAQVVSGVSGKDLPALVDGLKDKVGSGAVLV 813

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           V  +   KA+    VT D     +AV++ +++A  LGG GGGGRP MAQ+GG
Sbjct: 814 VADTG-GKAACAAGVTADKTGTVSAVEIVKIAAAALGGKGGGGRPDMAQAGG 864


>gi|254450715|ref|ZP_05064152.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198265121|gb|EDY89391.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 884

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/892 (48%), Positives = 570/892 (63%), Gaps = 40/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++S IR+TFL+++ + GH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   YQ 
Sbjct: 1   MTSLSDIRSTFLDYYARQGHAVVASSPLVPRNDPTLMFTNSGMVQFKNRFTGVESGDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA+ LWKKI G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKKI-GVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNVVFMQNEQFDDGTLKPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLF+ LI+AS   T     G+  V+HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 GHDNYETDLFRALIEASAHATSTDPFGDQNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG+AYPEL   + LIE+TL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHILGSKDPVMHRLVPALVQQMGAAYPELGLGQTLIEDTLLNEEVRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L  + +   L+GD AFKLYDT G PLD+ QD L  +G  G+D   F 
Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGDTAFKLYDTFGFPLDLTQDALREQG-RGVDTDGFK 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G+     IWF + +K G+T+F+GY+                  
Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIADKQGSTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV   + V+ A  G  V ++F+QTPFY E+GGQ+GD G    D  
Sbjct: 461 -----TETAQGQLLAIVSDTDPVDSASKGDCVALIFNQTPFYGESGGQVGDEGTVKTDTG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK  G+F+H A V  G +       L +D   R  +  NHSATHLL+ AL  
Sbjct: 516 TARITDT-KKVVGLFLHMAEVTSGTITKGQGSELVVDPARRAAIRANHSATHLLNEALRV 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD TH+  +TSAEL  +E +VN  + QN  V TRIM  +DA
Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTGAMTSAELTQVEQDVNRYVQQNTAVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+      +  +G  +S  LCGGTHV+ TG+I +  + SE
Sbjct: 635 RAIGAQALFGEKYGDEVRVVSMGRAKTGKGAEGLTYSLELCGGTHVARTGDIGMFALTSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
            +   G+RRIEA+TGQ A ++L  +DE L  +   LK    +V  RV+ + +E + L  +
Sbjct: 695 RASSDGVRRIEALTGQTAMTYLRTRDETLGDVEGMLKAKGADVASRVKALMDERKALANE 754

Query: 772 LIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +   +R++ +      E      I  + F + ++  +  K+L +++D ++  + SG I+L
Sbjct: 755 VAQLRREVAMGGGAKDEGPQAKTINGIAFKAQVMQGITGKDLPAMIDEMKSVMGSGAILL 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +    + KA+V   VT DL+D+ +AVDL R +   LGG GGGGRP MAQ GG
Sbjct: 815 IA-DGDGKAAVAAGVTADLVDKVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 865


>gi|114767542|ref|ZP_01446296.1| alanyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540395|gb|EAU43481.1| alanyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 891

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/903 (47%), Positives = 573/903 (63%), Gaps = 45/903 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F+K GH+++PSS L+P NDPTLMFTNSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNDIRSTFLGYFEKQGHQVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK+ AI  AW+L+T+E D+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKKEAIPFAWELVTRELDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +T+Y  D+EA ++WKK +G+  D+IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PAERLLVTIYHTDDEAAEIWKK-TGVPDDRIIRIDTTDNFWMMGPTGPCGPCTEIFFDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS EE G+R++EIWNLVFMQ EQ        L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DKYWGGPPGSPEEDGDRFVEIWNLVFMQNEQFEDGSMRALDMQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 TNDNYSTDLIRALIEASADATSSDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVRQMGQAYPELVRAQPLIEETLKLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  LG+   L G  AFKLYDT+G PLD+ QD L  RG   +D   F+
Sbjct: 360 QTLDRGLKLLDDELVGLGEGAKLPGQAAFKLYDTYGFPLDLTQDALRERGRE-VDTGGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IWF + +  GAT F+GYD                  
Sbjct: 419 EAMAEQKAKARAAWSGSGEAADLAIWFEIADANGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGD 537
                T      + A+V+ G  VE   +G+   VV +QTPFY E+GGQ+GD+G    + D
Sbjct: 461 -----TETAEGQMLALVKDGAEVEALEAGESGWVVMNQTPFYGESGGQVGDSGWMRRLED 515

Query: 538 GIRL-QITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              L ++TD QK   G +F H   +++G      ++ L +D+  R ++  NHSATHLLH 
Sbjct: 516 EHDLAEVTDTQKMGGGKVFAHQVTIKQGRFAKGEAVALEVDHARRGKIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   P+ LRFD +H+K +T  E+  +E  VN  I QN  V TRIM 
Sbjct: 576 ALRRALGDHVAQRGSLNAPERLRFDFSHAKALTPEEISRVEREVNAFIRQNSAVNTRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+  E       DG  +S  LCGGTHV+ TG+I   
Sbjct: 636 PDDARALGAQALFGEKYGDEVRVVSMGTEAGSGKGGDGQTYSIELCGGTHVAQTGDIGTF 695

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SE++  AG+RRIEA+TG+ A + L G+D+ L  +   LK      V RV  + +E R
Sbjct: 696 ALTSETASAAGVRRIEALTGEAAMAELRGRDKALGEIEGLLKAHGAEAVSRVGALLDERR 755

Query: 769 KL--QLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL  ++   +R L               ++  V+F++ ++S V  K+L  ++D  + ++ 
Sbjct: 756 KLENEVAQLRRDLAMAGGAGQGGGAEAREVGGVSFVAQVLSGVSGKDLPPLIDEHKARLG 815

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG ++L+  +   K +V   VTEDL    +AVDL + + + LGG GGGGRP MAQ G  +
Sbjct: 816 SGAVLLIADTG-GKVAVAAGVTEDLTGSHSAVDLVKAAVEALGGKGGGGRPDMAQGGAKD 874

Query: 882 GNK 884
            ++
Sbjct: 875 ASE 877


>gi|126735784|ref|ZP_01751529.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126714971|gb|EBA11837.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 885

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/894 (48%), Positives = 574/894 (64%), Gaps = 45/894 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MTSLADIRSTFLNYFGKQGHAIVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFAWELLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EA  +WKK++GL  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFDDGSLKPLEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 241 KHDNYDTDLMRALIEASADATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +P+M  L+PAL  +MG+AYPEL Q + LIEETL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGGKDPVMHRLVPALVQQMGAAYPELGQGQRLIEETLLNEEVRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L +L  D  L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLKLLDEELQNLPDDAALPGTAAFKLYDTYGFPLDLTQDALREKGRE-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF++ ++ GAT F+GYD L                
Sbjct: 420 AAMAEQKAKARAAWSGTGEAADSAIWFNITDESGATDFLGYDTLT--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V  G+  + A     V++V +QTPFYAEAGGQ+GD G    +  
Sbjct: 465 --------AEGQIMALVVDGDRADHADGA--VQIVLNQTPFYAEAGGQVGDAGTLRTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + +ITD +K  E I VH A V  G L       L +D   R  +  NHSATHLL+ AL  
Sbjct: 515 KAEITDTKKFGE-IHVHFAKVTEGHLHKGQGAELAVDPVRRANIQANHSATHLLNEALRA 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS   PD LRFD +H+K +  AEL  I+ +VN II QN PV TRIM  +DA
Sbjct: 574 VLGDHIAQRGSLNGPDRLRFDFSHTKALNDAELAQIDRDVNAIIRQNSPVETRIMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  ++       G  +S  LCGGTHV   GEI     + 
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGRQEGSGKGMGGNTYSLELCGGTHVKQLGEIGAFVTLG 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TGQ A  HL  +++ L + A+ LK     +V R++   E ++  + 
Sbjct: 694 DSASSAGVRRIEALTGQAALDHLRDREKILFAAAAELKTPIDRLVSRIK--GESFKLKEA 751

Query: 773 IHA----KRKLQL--NVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++     +R+L +    +D +  ++ + V F + ++S V  K+L +++D ++  ++SG +
Sbjct: 752 LNENAQLRRELAMGGGAKDAAPSEVINGVAFQAQVLSGVTGKDLPALIDEMKAAMESGAV 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +L+  +   KA+V + VT DL+DR +AVD+ R +   LGG GGGGR  MAQ GG
Sbjct: 812 LLIADAG-GKAAVAVGVTADLIDRVSAVDILRAATPELGGKGGGGRADMAQGGG 864


>gi|254436958|ref|ZP_05050452.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198252404|gb|EDY76718.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 884

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/897 (47%), Positives = 570/897 (63%), Gaps = 40/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++S IR+TFL+++ +NGH+++ SS L+P NDPTLMFTN GMV FKN FTG E   YQ 
Sbjct: 1   MTSLSDIRSTFLDYYARNGHKVVASSPLVPRNDPTLMFTNCGMVQFKNRFTGVESGNYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWNLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA+ LWKKI G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKKI-GVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ +     +L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNIVFMQNEQFDDGTMKLLEMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DL + LI+AS   T    +G+  V+HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 HHDNYNTDLMRALIEASANATDGAPDGDGNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+ AL  +MG+AYPEL Q + LIE+TL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPVMHRLVSALIQQMGAAYPELGQGQTLIEDTLLNEEIRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L  + +   L+G  AFKLYDT G PLD+ QD L  +G  G+D   F 
Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGATAFKLYDTFGFPLDLTQDALREKG-RGVDTDGFK 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G+     IWF + + +G T+F+GY+                  
Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIVDAHGVTEFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + AIV   + V  A +G  V ++F+QTPFY E+GGQ GD G    D  
Sbjct: 461 -----TETAQGQLLAIVSDTDPVNSANTGDCVALIFNQTPFYGESGGQEGDQGTVKTDTG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD  KK  G+F+H A V  G + T     L +D+  R  +  NHSATHLL+ AL  
Sbjct: 516 TARVTDT-KKVAGLFLHMAEVTAGAITTGQGSELVVDHAQRSAIRANHSATHLLNEALRV 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD TH+  +T+ EL  +E +VN  + QN  V TRIM  +DA
Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTSCMTAVELAQVEHDVNHYVQQNTTVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG------VHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA A  G KY D VRVVS+   + G       +S  LCGGTHV+ TG+I +  + SE
Sbjct: 635 RALGAQAQFGEKYGDEVRVVSMGRANTGKGVDRQTYSLELCGGTHVARTGDIGMFALTSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
            +   G+RRIEA+TGQ AR +L  +DE L  +   LK    +V  RV+ + +E R L  +
Sbjct: 695 RASSDGVRRIEALTGQTARRYLRTRDETLADVEGMLKSKGTDVATRVKALMDERRALANE 754

Query: 772 LIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +   +R++ +      E      I  V F + ++  V  K+L +++D ++  + SG ++L
Sbjct: 755 VAQLRREVAMGGGAKDEGTQDKDINGVAFKAQVMQGVTGKDLPAMIDDMKSAMGSGAVLL 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +    + KA+V   VT DL+D+ +AVDL R +   LGG GGGGRP MAQ GG + + 
Sbjct: 815 IA-EGDGKAAVAAGVTADLVDKISAVDLVRAAVAKLGGKGGGGRPDMAQGGGKDASN 870


>gi|260574639|ref|ZP_05842642.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259023056|gb|EEW26349.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 882

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/891 (48%), Positives = 572/891 (64%), Gaps = 40/891 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFLEFFQ+NGH ++ SS L+P NDPTLMF NSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLEFFQRNGHRVVESSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPYAWELLTRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WK+++GL   +IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKDKLLVTVYHTDDEAANIWKRVAGLPDSRIIRIPTDDNFWRMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ ++G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 DKIWGGPPGSADQDGDRFIEIWNLVFMQNEQFADGRLVPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRALIEASAHATSTDPDGEGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +PLM  L+PAL  +MG AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGAQDPLMHRLVPALVRQMGGAYPELTRAQALIEETLQLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL   LS + +   L G+ AFKLYDT+G PLD+ QD L  +G + +D   F+
Sbjct: 361 QTLERGLHLLADELSRIPEGAALPGEAAFKLYDTYGFPLDLTQDALREQGRS-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G     KIWF + E +G ++F+GYD                  
Sbjct: 420 AAMAEQKAKARASWAGSGETGDAKIWFQIAEDFGPSEFLGYD------------------ 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+V  G  V+ A  G +V++V +QTPFYAE+GGQ+GD G    +  
Sbjct: 462 -----TETAEGQVLALVADGAAVQTA--GARVQIVVNQTPFYAESGGQVGDAGWIRTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+TD  KKA G+ +H A V  G +       L +D+  R  +  NHSATHLL+ AL  
Sbjct: 515 VAQVTDT-KKAAGVVIHVAEVTEGQISQGQPAKLEVDHSRRAAIRANHSATHLLNEALRR 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +T +EL  +E  VN +I QN PV TR+M  +DA
Sbjct: 574 ALGDHVAQRGSLNAADRLRFDFSHAKGMTPSELAQVEAEVNAVIRQNSPVETRLMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+       +  DG  +S  LCGGTHV+  GEI    I+S
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGALAGSGKGSDGQTYSLELCGGTHVARLGEIGSFLILS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES+  +GIRRIEAITG+     +      L++ A+ L     ++  R++ +  E + LQ 
Sbjct: 694 ESASASGIRRIEAITGEGVLRDVRANYAHLEAAAAALGAVPADLAPRIKALMAERKALQN 753

Query: 772 -LIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +   +R++ +    E      I  V F++ ++S V  K+L  ++D ++ ++ SG ++L+
Sbjct: 754 EVAQLRREVAMGGRAEGPEAKDINGVKFIAQVLSGVSGKDLPGLIDEMKARLGSGAVLLI 813

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             +  K A V   VT DL+ R +AV L + +A+ +GG GGGGRP MAQ+GG
Sbjct: 814 ADTGGKPA-VAAGVTGDLVARLSAVALVKAAAEAMGGKGGGGRPDMAQAGG 863


>gi|163731786|ref|ZP_02139233.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161395240|gb|EDQ19562.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 885

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/911 (47%), Positives = 581/911 (63%), Gaps = 41/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T++  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWNLVTRDLGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  DEEA  +WKK+ G+  D+II I TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLYVTVYHTDEEAAAIWKKV-GVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLTAQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL QA+ +I +TL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMITQTLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L+ L   + L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 360 QTLERGLKLLDDELNALPDGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      +WF + +  G T F+GYD                  
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADATVWFDVADAEGTTDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      + A+VQ G   + A +G+ V++  +QTPFYAE+GGQ+GD+G       
Sbjct: 461 -----TEVAEGQIVALVQDGAATDTATTGETVQIALNQTPFYAESGGQVGDSGVIKTAKG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K A+ +FVH A V  G++    +  L +D   R  +  NHSATHLLH AL  
Sbjct: 516 TATVTDCRKTAD-VFVHTAKVTEGVISVGEAAQLAVDPARRTAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H++ ++S EL  +E +VN  I QN PV TRIM  + A
Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSSEELARVEADVNTYIRQNAPVETRIMTPDAA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  ++G         +S  LCGGTHV  TG+I     + 
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSAKGLNGDTYSLELCGGTHVRQTGDIGAFVALG 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RRIEA+TG  A +HL  QD++L  +AS LK    +V  RV  + +E R L  
Sbjct: 695 DSASSAGVRRIEALTGAAALAHLRAQDQRLAEVASDLKAQAADVPERVRSLLDERRALSN 754

Query: 771 QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L ++    S       +A    ++ ++S V  K+L  ++D +++++ SG+++
Sbjct: 755 EVAQLRRELAMSGGSGSAAPDVKDVAGTPLLAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+    + KA+V   VT+DL ++ +AVDL + +   LGG GGGGRP MAQ G  + + AD
Sbjct: 815 LIA-DADGKAAVAAGVTKDLTEKVSAVDLVKAAVSALGGKGGGGRPDMAQGGAKDASNAD 873

Query: 887 QAIAGVASFLK 897
            AIA V + LK
Sbjct: 874 AAIAAVETVLK 884


>gi|254510259|ref|ZP_05122326.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221533970|gb|EEE36958.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 890

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/909 (48%), Positives = 575/909 (63%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   YQ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+EE G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGAMVELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L   MG+ Y EL QA+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPIMYQLVPTLVQLMGAQYSELGQAQPLIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L   + L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLPAGDPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + +  GAT F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWAGSGESADQVVWFDVLDTAGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-----CA 534
                T      + A+V  G +V+    G    +V +QTPFY EAGGQ+GDTG      A
Sbjct: 461 -----TEKAEGQIAALVVDGVLVDSIEQGGSGWIVVNQTPFYGEAGGQVGDTGEIRRLDA 515

Query: 535 IGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             D  R++  D +K AEG ++ H   V+ G +    ++ L +D+  R  +  NHSATHLL
Sbjct: 516 RDDVARVE--DTRKFAEGKVYAHKVTVDHGAISKGDAVELEVDHARRTAIRANHSATHLL 573

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS    D LRFD +HSK +T  E+K +E  VN  I QN  V TRI
Sbjct: 574 HEALRETLGDHVAQRGSLNASDRLRFDFSHSKALTLDEMKKVEREVNAFIRQNSTVETRI 633

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIML 707
           M  +DA   GA AL G KY D VRVVS+      + +DG   S  LCGGTHV  TG+I  
Sbjct: 634 MTPDDARELGAQALFGEKYGDEVRVVSMGKATTGKGQDGETWSIELCGGTHVRQTGDIGT 693

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             ++ +S+  AG+RRIEA+TG  A  +L  QD +L ++A  LK    +VV RV+ + +E 
Sbjct: 694 FVVLGDSASSAGVRRIEALTGDEAFKYLSAQDHRLGTIALELKAQPDDVVTRVKSLLDER 753

Query: 768 RKLQ--LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + LQ  +   +R L +              +  V FM+  ++ V  K+L +++D  + ++
Sbjct: 754 KALQNEVAQLRRDLAMAGGAGQGGGSEARDVNGVAFMAQSLTGVSGKDLPALIDEHKSRL 813

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            SG+++L+  +   KA+V   VT DL D+ +AVDL R +   LGG GGGGRP MAQ GG 
Sbjct: 814 GSGVVLLIADTG-GKAAVAAGVTADLTDQLSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 872

Query: 881 NGNKADQAI 889
           + + AD AI
Sbjct: 873 DASNADAAI 881


>gi|304321543|ref|YP_003855186.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303300445|gb|ADM10044.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 884

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/870 (48%), Positives = 571/870 (65%), Gaps = 32/870 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +++V+ IR  FL FF++  HE++PS+ L+P NDPTL+F N+GMVPFKN+FTG +K  Y  
Sbjct: 2   ITSVNDIRQAFLSFFEERDHEIVPSAPLVPQNDPTLLFINAGMVPFKNVFTGADKRPYDK 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+ F L
Sbjct: 62  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIINAWTLLTEVFGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +T++  D+EA  LWKKI+GL  ++IIRI T DNFWSM +TGPCGPCSEIF+D G
Sbjct: 122 PAEKLLVTIFHTDDEAASLWKKIAGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 181

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             IPGG PGS EE G+R+IEIWNLVFMQF+QQ   ER  LPK SIDTGMGLER+ATVLQ 
Sbjct: 182 PQIPGGPPGSPEEDGDRFIEIWNLVFMQFDQQPDGERLSLPKPSIDTGMGLERIATVLQG 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNY+ DLF+ LI AS  VTG    G++++ HRVI DHLR++SFLI+DG+ P+NEGRGY
Sbjct: 242 IHNNYETDLFRALIDASVDVTGRPATGDDLIAHRVIADHLRAASFLISDGVTPSNEGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM YA  LG  +PL+  L+PAL  EMG AYP+LI+ + L+++TLR E+ERF 
Sbjct: 302 VLRRIMRRAMRYAHGLGAKDPLLTQLVPALVAEMGGAYPDLIRGQSLVQDTLRVEEERFA 361

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL      L     L G+ AFKLYDT+G PLD+ +D L   G  G+D   F+
Sbjct: 362 DLLDRGLKLLADETQSLTPGGTLAGETAFKLYDTYGFPLDLTEDALRRAGY-GLDQAGFD 420

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++RARA   G G  + E +WF +K   GAT FIGY                   
Sbjct: 421 AAMAAQKARARASWQGSGDASAETVWFDVKADSGATDFIGY------------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
               +      +V A+ Q GE V E+ +G+++  V +QTPFYAE+GGQ GD G A G+ +
Sbjct: 462 ----VHEEAEGVVLAMAQNGERVAESGAGEEIAFVTNQTPFYAESGGQAGDAGTAEGEAV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           RL ITD +K A  + VH A +++G L+    L L +D + R ++  NHSATHL+H AL  
Sbjct: 518 RLVITDTKKGAGSLHVHQARIDKGTLKEGDVLRLKVDGKRRVRIKSNHSATHLVHAALRR 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS + P+  RFD +H+  +T A++  +E  VN II QN      +M  EDA
Sbjct: 578 HLGDHVTQKGSFVGPESFRFDFSHNDGLTPAQIDEVEAEVNAIIRQNDAGQISLMPYEDA 637

Query: 660 IASGAAALLGTKYNDRVRVVSV---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I++GA AL G KY D VRV+ +     +    +S  LCGGTHV+ TG+I L  IVSE ++
Sbjct: 638 ISAGAMALFGEKYEDEVRVLRLGEDPADPARPYSMELCGGTHVARTGDIALFAIVSEGAV 697

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ AR++   +     + A+ LKVS  ++  R+ ++ +E +KL+  L+ 
Sbjct: 698 ASGVRRIEAVTGEAARAYYKERAASAAAAAAALKVSIADLPARLSQLMDERKKLEKDLVA 757

Query: 775 AKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           A++K  L   D      + D+ F+  ++  V +KEL+ ++   +KK +  I   +  + E
Sbjct: 758 ARKKAALGGGDGPRTETVGDITFVGQVVEGVPAKELRGLIADAKKKYEKVIAAFIA-TAE 816

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            KAS+ + V++ L++++ A DL R+    L
Sbjct: 817 DKASLSVGVSDALIEQWPAPDLVRIGVDAL 846


>gi|260433747|ref|ZP_05787718.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417575|gb|EEX10834.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 890

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/898 (48%), Positives = 573/898 (63%), Gaps = 46/898 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGLETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+EE G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L   MG+ Y EL +A+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAEDPVMHRLVPTLVQLMGAQYSELGRAQALIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ L  D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDEEVAGLPDDAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + +  GAT F+GY+                  
Sbjct: 419 AAMAEQKAKARAAWAGSGEAADQAVWFDVLDAAGATDFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC----AI 535
                T      V A+++ G +VE+   G+   +V +QTPFY EAGGQ+GDTG       
Sbjct: 461 -----TEKAEGQVLAVIRDGALVEKLEPGESGWIVSNQTPFYGEAGGQVGDTGVIRRLED 515

Query: 536 GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            D + L + D +K A+  +  H   VERG+      + L +D+  R  +  NHSATHLLH
Sbjct: 516 RDEVAL-VEDTKKFADAKVIAHKVTVERGVFAKGEPVELEVDHARRSAIRANHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL   LG HV+Q GS    D LRFD +H+K +T  E++++E  VN  I QN PV TRIM
Sbjct: 575 EALRETLGEHVAQRGSLNAADRLRFDFSHTKAMTPEEIETVEREVNAFIRQNSPVETRIM 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLL 708
             +DA   GA AL G KY D VRVVS+      +  DG   S  LCGGTHV  TG+I   
Sbjct: 635 TPDDARKLGAQALFGEKYGDEVRVVSMGKAPTGKGHDGETWSIELCGGTHVRQTGDIGTF 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+ +S+  AG+RRIEA+TG  A  +L  QD +L  +AS LK    +VV RV+ + +E +
Sbjct: 695 VILGDSASSAGVRRIEALTGDAALEYLSTQDRRLAQVASELKAQPEDVVTRVKALLDERK 754

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIA----DVN---FMSHIISEVDSKELKSVMDALQKKIQ 821
            LQ   A+ + +L +   +         DVN   F++  +S V  K+L +++D  + ++ 
Sbjct: 755 ALQNEVAQLRRELAMAGGAGQANGAVAKDVNGIKFLAQALSGVSGKDLPALIDEHKTRLG 814

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           SG ++L+  S   KA+V   VT DL  + +AVDL R + + LGG GGGGRP MAQ GG
Sbjct: 815 SGAVLLIADSG-GKAAVAAGVTSDLTQKISAVDLVRAAVQELGGKGGGGRPDMAQGGG 871


>gi|56696902|ref|YP_167264.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|81558517|sp|Q5LRU1|SYA_SILPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56678639|gb|AAV95305.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 890

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/915 (48%), Positives = 574/915 (62%), Gaps = 46/915 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GH ++PSS L+P NDPTLMFTNSGMV FKN FTG +K  Y  
Sbjct: 1   MPSLNDIRSTFLNYFAKQGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELITRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++WKK+ G+   +IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKKV-GVPESRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS EE G+R+IEIWN+VFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEKFEDGSMVDLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADATSVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+  L  +MG+AYPEL +A+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVRTLVGQMGAAYPELGRAQALIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L ++  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELTALPEEAPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G  T   IWF + +  GAT F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWAGSGESTDNAIWFDVLDVAGATDFLGYD------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC----AI 535
                T        A+V  G + +    G    VV +QTPFY E+GGQ+GDTG       
Sbjct: 461 -----TEKAEGQALALVVDGALSDRIAEGGSGWVVTNQTPFYGESGGQVGDTGVIRRLEN 515

Query: 536 GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            D + L + D +K A+G ++ H   +ERG L    ++ L +D+  R  +  NHSATHLLH
Sbjct: 516 RDHVAL-VEDSRKFADGKVYAHKVTMERGALAKGDAVELEVDHARRSAIRANHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL   LG HV+Q GS    D LRFD +H+K +T AEL  +   VN  I QN  V TRIM
Sbjct: 575 EALREALGDHVAQRGSLNAADRLRFDFSHAKALTEAELAQVGAEVNRFIRQNSRVETRIM 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLL 708
             +DA A GA AL G KY D VRVVS+      +  DG   S  LCGGTHV+ TG+I + 
Sbjct: 635 TPDDARAIGAQALFGEKYGDEVRVVSMGRAETGKGADGKTWSIELCGGTHVAQTGDIGMF 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ +S+  AG+RRIEA+TGQ A  HL  +  +L  + + LK     V  RV  + +E +
Sbjct: 695 VLLGDSASSAGVRRIEALTGQAAFDHLSQEGARLSQVTAMLKAQPAEVAERVRALMDERK 754

Query: 769 KLQ--LIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            LQ  +   +R L              H++  V F++ ++S V  K+L +++D  + ++ 
Sbjct: 755 ALQNEVAQLRRDLAMAGGAGQGGGAETHEVGGVPFLAQVLSGVSGKDLPALIDEHKSRMG 814

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG ++L+      KA+V   VTEDL  R +AVDL + +   LGG GGGGRP MAQ GG +
Sbjct: 815 SGAVLLI-ADAGGKAAVAAGVTEDLTARVSAVDLVKAAVAALGGKGGGGRPDMAQGGGQD 873

Query: 882 GNKADQAIAGVASFL 896
             KAD AI      L
Sbjct: 874 AGKADAAIKAAEQVL 888


>gi|91204886|ref|YP_537241.1| alanyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122426110|sp|Q1RKG2|SYA_RICBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91068430|gb|ABE04152.1| Alanyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 877

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/881 (47%), Positives = 565/881 (64%), Gaps = 35/881 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ F+ +F+ N H  + SS LIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   IRSKFISYFKANNHTHVSSSPLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYDKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TVY  D+EA   WKKI+G S D+IIRI TNDNFWSM + GPCGPCSEIF+D GE I GG
Sbjct: 129 ATVYHTDDEAASYWKKIAGFSDDRIIRIKTNDNFWSMGDLGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ NK  R  LPK SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQINKDTRIDLPKKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K E     ++RVI DHLR+ SFLIADG++P++EGRGYVLRRIM
Sbjct: 249 IDLFQEIISFTENILKVKVEAEAKFSYRVIADHLRACSFLIADGVVPSSEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRAMRHAHILGSKEPLMYKLLPKLVDLMGNTYPELKRAESFISSILEQEEIRFKTTLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL     +L     L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F Q + EQ
Sbjct: 369 LKLLSEETENLNAGGRLSGEVAFKLYDTYGFPLDLTEDILKNRNIA-VDHQGFEQQMLEQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           +  AR   LG G   T+++WF +K KYG+T+F+GY+L       + D K++       L 
Sbjct: 428 KECARKSWLGSGESKTDQLWFDIKAKYGSTEFLGYNL------NEADGKIVALIKDNALV 481

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N +S I    +                ++ +QTPFY E+GGQ+GD G        +++ D
Sbjct: 482 NDISEIDTQFL----------------LIANQTPFYGESGGQMGDIGVIKTQNCEIEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  ++++G + T+ +   +ID + R+ L I+HSATHLLH  L  ILG HV
Sbjct: 526 TLKYLGFIIVHKCVLKKGKVITDENANFSIDVKYRQNLRIHHSATHLLHAVLHQILGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS +    LRFD++H K +T  E+  IED VN+II  N  V T +M+ EDA+  GA 
Sbjct: 586 TQKGSLVATSYLRFDISHPKALTPEEIVLIEDKVNEIIRDNHEVDTTLMSTEDAVKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AGIRRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRHTGDIGCFKITSESAIAAGIRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+     +  ++  LK++ + LK ++  +V +V  I E  ++L+    K     L L+
Sbjct: 701 VCGEFVIKLIREKEGLLKNIENSLKTNKNELVSKVNNILERNKELEKELEKTYLASLDLS 760

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           VE +     KI ++  +   +  +D+K L+   + L KK++  +++ VG +   K S+ +
Sbjct: 761 VEQIEKQAEKIKEIKLIYCHVENLDNKILRQAAENLTKKVEDLVVVYVG-NNSSKLSITV 819

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            ++  + D+FNA  +A+  +  LGG GGGG+P +AQ+GG +
Sbjct: 820 GISRAITDKFNAGFIAKELSLFLGGSGGGGQPSIAQAGGSD 860


>gi|157826336|ref|YP_001494056.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|205830190|sp|A8GQ73|SYA_RICAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157800294|gb|ABV75548.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 878

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/896 (46%), Positives = 566/896 (63%), Gaps = 35/896 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    T QK
Sbjct: 9   VRSKFITYFKTNNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQTKRPYHTAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAASCWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ  +NNYD
Sbjct: 189 LPGTKYEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVSNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A +LG  EPLM  LLP L   MGS YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRAMRHAHMLGSQEPLMYKLLPKLVDLMGSVYPELKRAESFISRILEQEEIRFKTTLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G++AFKLYDT+G PLD+ +DIL  R ++ ID   F + +  Q
Sbjct: 369 LKLLTEETETLKKGNELSGEIAFKLYDTYGFPLDLTEDILKNRDIS-IDHKGFEEQMLAQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KERARKAWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAECKIIALIKD 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKKIDTQFLLIS------------NQTPFYGESGGQMGDIGTIFAKDSDIEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I  H  I+++G +    S   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIAHKCILKKGQINVGDSANFSIDIKYRQNLRIHHSATHILHAVLHEVLGQHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T  E+ SIED VN+II  N  V T +M  EDA+  G  
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTHEEITSIEDKVNEIIRDNHEVNTTLMTTEDAVKQGVM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGSFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+     +  +D  LKS+ + LK ++  +V +V    E  ++L+    K    +L L+
Sbjct: 701 VCGEFVIKLIREKDSLLKSIENSLKTNKNELVTKVNNTLERNKELEKELEKTHLARLDLS 760

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           +E +      I  V  +   I  +D+K L+     L  K++  I++ +      K S+ +
Sbjct: 761 IEQIEKQAEDIKGVKLIYRHIENLDNKVLRQAAANLTNKVEDLIVVYI-TGNNDKLSITV 819

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + SF+
Sbjct: 820 AVSKAITDKYNACIIAKELSLFLGGSGGGGQASLAQAGGSDIGKLTNIHEKLYSFI 875


>gi|15604686|ref|NP_221204.1| alanyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|6226166|sp|Q9ZCA4|SYA_RICPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3861381|emb|CAA15280.1| ALANYL-TRNA SYNTHETASE (alaS) [Rickettsia prowazekii]
 gi|292572518|gb|ADE30433.1| Alanyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 877

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/881 (47%), Positives = 565/881 (64%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI   WDLLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T+Y  D+ A   WKKI+GL  D+IIRI TNDNFWSM +TGPCGPCSEIFFD GE I GG
Sbjct: 129 VTIYHTDDPAASYWKKIAGLKDDRIIRIKTNDNFWSMGDTGPCGPCSEIFFDHGEEIYGG 188

Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+ +E  +R+IEIWN+VFMQ+EQ NK+ R  LPK SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDENCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADGI+P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKIKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A +LG  EPLM  LLP L   MG+ YPEL  A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAESFISSILEQEEIRFKTTLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +  +D   F + +  Q
Sbjct: 369 LKLLTEETKTLTKGSKLSGEVAFKLYDTYGFPLDLTEDILKNRDIT-VDHKGFEELMLTQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE+YG+T+F+GY L                       
Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL----------------------- 464

Query: 486 NGVSSIVKAIVQQGEIVE--EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
           N     + A+++   +V+  + ++ Q + ++ +QTPFY E+GGQ+GD G     G  +++
Sbjct: 465 NEAECKIIALIKNNNLVDNIQEINTQFL-LIANQTPFYGESGGQMGDIGMIFSQGSEIEV 523

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  K    I VH  I+++G +    +  L I+ + R+ L I+HSATH+LH  L  ILG 
Sbjct: 524 IDTFKYLRSIIVHKCILKKGKINIGENANLNINIRYRQNLRIHHSATHILHAVLHKILGK 583

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
            V Q GS +T   LRFD+ HSK IT+ E+  IED VN+II  N  V T +M  EDAI  G
Sbjct: 584 QVIQKGSLVTSTYLRFDINHSKAITNQEITLIEDQVNEIIRNNHEVTTTVMFTEDAIKQG 643

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I+SES+I AG+RRI
Sbjct: 644 AIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGSFKIISESAIAAGVRRI 698

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQ 780
           EA+ G+     +  +D  LKS+ S  K ++  ++ +V  I E  ++L+    K     L 
Sbjct: 699 EAVCGEFVIKLIRERDSLLKSIESSFKTNKNELITKVINILERNKELEKELEKAHLASLD 758

Query: 781 LNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           L++E +     +I  +  +   +  +++K L+   + L KK+++ I++ +    + K S+
Sbjct: 759 LSIEQIKKQTKEITGIKLLYKEVGNINNKILRQAAENLTKKVENLIVVYIAHGVD-KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D+FNA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKFNAGIIAKELSLFLGGSGGGGQASIAQAGG 858


>gi|67459745|ref|YP_247369.1| alanyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|75535865|sp|Q4UJT5|SYA_RICFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|67005278|gb|AAY62204.1| Alanyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 878

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/880 (47%), Positives = 567/880 (64%), Gaps = 37/880 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY  DEEA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 VTVYHTDEEAASYWKKIAGFRDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRAMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKTTLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G++AFKLYDT+G PLD+ +DIL  R ++ +D   F + +  Q
Sbjct: 369 LKLLTEETETLTKGNELSGEIAFKLYDTYGFPLDLTEDILKNRDIS-VDHKRFEEQMLAQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAECKIIALIKD 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQMGDIGMIFSKDSEIEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G ++   +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIVHKCILKKGQIKIGENANFSIDIKYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVDTTLMTTEDAVKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQL 781
           + G+     +  +D  LKS+ S LK ++  ++ +V  I E      ++L+ +H  R L L
Sbjct: 701 VCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKELEKELEKVHLAR-LDL 759

Query: 782 NVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           ++E +      I  V  +   I  +D+K L+   + L KK++  I++ +      K S+ 
Sbjct: 760 SIEQIEKQAEDIKGVKLIYRYIENLDNKVLRQAAENLTKKVEDLIVVYI-TGNNDKLSIT 818

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + V++ + D++ A  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 819 VAVSKAITDKYKAGIIAKELSLFLGGSGGGGQASLAQAGG 858


>gi|91762223|ref|ZP_01264188.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718025|gb|EAS84675.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 889

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/915 (44%), Positives = 593/915 (64%), Gaps = 54/915 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  Y   TT
Sbjct: 6   LNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYVRATT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +D+ 
Sbjct: 66  SQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGIDKN 125

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+TVY +DEEAF  WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+ +
Sbjct: 126 RLYVTVYHDDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGDHL 185

Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ   +
Sbjct: 186 EGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGTHD 245

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NY+ D FK LI ++     +K   +N  + RVI DHLR+SSFL+A+G+LP+NEGRGYVLR
Sbjct: 246 NYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYVLR 305

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RIMRR M ++ LLG  +P+  ++   L  EM + YPEL +A+ LI+ETL++E+E+F   L
Sbjct: 306 RIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLVLL 365

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           DRG+ +L+  L  + K  IL G+VAFKLYDT G PLD+ +DIL  + +  +D   F+  +
Sbjct: 366 DRGIKILNEELEKVEK--ILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDLLM 422

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           +E +  A+ +  G G  + ++IWF +K++ GAT F+GY                      
Sbjct: 423 KESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGYS--------------------- 461

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
             T+    +V  I++  + V++     +  ++ +QTPFY E+GGQ+ DTG    +    +
Sbjct: 462 --TDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEIFEFE 519

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           ++DVQKK   +F H+  V++G ++ + S+ L ID Q R  +   HSATHLLH AL  +LG
Sbjct: 520 VSDVQKKLGDLFAHYGKVKKGSVKLKDSVELKIDTQRRNNIRAYHSATHLLHEALRRVLG 579

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV+Q GS +  D LRFD +H KPI+  E+K IE  VN II +   V TRIM  ++A+ +
Sbjct: 580 EHVTQKGSLVQSDRLRFDFSHMKPISDEEMKKIEHYVNSIIEKKSEVKTRIMTPKEAVEN 639

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRV+S+  E+G   S+ LCGGTHV +T +I    I+S+SSI AG+RR
Sbjct: 640 GALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGVRR 699

Query: 723 IEA------------------ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +EA                  ++ Q+  + +   + K+  L     +   + V  ++++ 
Sbjct: 700 VEALRDVQLTDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKDLN 759

Query: 765 EEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ +L +I     K K ++N + ++  K+   N M     ++  K+L+ ++D  +K+I 
Sbjct: 760 RQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIM-----DLPFKDLRKLIDEGKKEIG 814

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            G++++  I+ + K  + + VT+ L ++F+AV + R  ++V+GG GGGGR   AQ+GG  
Sbjct: 815 EGLVIIYAIN-DNKVGLAVGVTKTLEEKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTL 873

Query: 882 GNKADQAIAGVASFL 896
            +K +++   +   +
Sbjct: 874 PDKIEESFENIKKLI 888


>gi|71083347|ref|YP_266066.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|83305853|sp|Q4FMX6|SYA_PELUB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71062460|gb|AAZ21463.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 889

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/915 (44%), Positives = 592/915 (64%), Gaps = 54/915 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKNIFTG EK  Y   TT
Sbjct: 6   LNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNIFTGLEKRDYVRATT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +D+ 
Sbjct: 66  SQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGIDKN 125

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+TVY  DEEAF  WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+ +
Sbjct: 126 RLYVTVYHNDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGDHL 185

Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ   +
Sbjct: 186 EGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGTHD 245

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NY+ D FK LI ++     +K   +N  + RVI DHLR+SSFL+A+G+LP+NEGRGYVLR
Sbjct: 246 NYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYVLR 305

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RIMRR M ++ LLG  +P+  ++   L  EM + YPEL +A+ LI+ETL++E+E+F   L
Sbjct: 306 RIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLVLL 365

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           DRG+ +L+  L  + K  IL G+VAFKLYDT G PLD+ +DIL  + +  +D   F+  +
Sbjct: 366 DRGIKILNEELEKVEK--ILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDLLM 422

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           +E +  A+ +  G G  + ++IWF +K++ GAT F+GY                      
Sbjct: 423 KESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGYS--------------------- 461

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
             T+    +V  I++  + V++     +  ++ +QTPFY E+GGQ+ DTG    +    +
Sbjct: 462 --TDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEAFEFE 519

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           ++DVQKK   +FVH+  V+RG ++ + ++ L ID Q R  +   HSATHLLH AL  +LG
Sbjct: 520 VSDVQKKLGDLFVHYGKVKRGSVKLKDNVELKIDTQRRNNIRAYHSATHLLHEALRRVLG 579

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV+Q GS +  D LRFD +H KPI+  E++ IE  VN II +   V TRIM  ++A+ +
Sbjct: 580 EHVTQKGSLVQSDRLRFDFSHMKPISDEEIRKIEHYVNSIIEKKSEVKTRIMTPKEAVEN 639

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRV+S+  E+G   S+ LCGGTHV +T +I    I+S+SSI AG+RR
Sbjct: 640 GALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGVRR 699

Query: 723 IEA------------------ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +EA                  ++ Q+  + +   + K+  L     +   + V  ++++ 
Sbjct: 700 VEALRDAQLIDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKDLN 759

Query: 765 EEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++ +L +I     K K ++N + ++  K+   N     I ++  K+L+ ++D  +K+I 
Sbjct: 760 RQFDQLSVISILKDKDKNKINDQTINGFKVRFQN-----IIDLPFKDLRKLIDEGKKEIG 814

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            G++++  I+ + K  + + VT+ L  +F+AV + R  ++V+GG GGGGR   AQ+GG  
Sbjct: 815 EGLVVIYAIN-DNKVGLAVGVTKTLEKKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTL 873

Query: 882 GNKADQAIAGVASFL 896
            +K +++   +   +
Sbjct: 874 PDKIEESFENIKKLI 888


>gi|157804247|ref|YP_001492796.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|205830191|sp|A8F078|SYA_RICCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157785510|gb|ABV74011.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 878

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/900 (45%), Positives = 575/900 (63%), Gaps = 43/900 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKTNNHTHVPASSLIPQNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTK+F+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKKFELPKNKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 VTIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGENIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEI N+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  +LQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEILNMVFMQYEQVDKDTRIELPQKSIDTGMGLERMTAILQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQKIIDYTENIVKVKVKGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +++  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNIYPELKRSESFISNILEQEEIRFKTTLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K + L+G++AFKLYDT+G PLD+ +DIL    ++ +D   F + +  Q
Sbjct: 369 LKLLSEETETLTKGDKLSGEIAFKLYDTYGFPLDLTKDILKNYDIS-VDHQGFKEQMLAQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T ++WF +KE+YG+T+F+GY L       + + K++      +L 
Sbjct: 428 KERARKSWLGSGEYKTNQLWFDIKEQYGSTEFLGYTL------NEAECKIIVLIKDNNLV 481

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N +                  +  +  ++ +QTPFY E+GGQ+GD G        +++ D
Sbjct: 482 NNIQE----------------TDTQFLLISNQTPFYGESGGQMGDNGTIFAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIVHKCILKKGKIHVGENANFSIDVKYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD+++SK +T+ E+  IED VN+II  N  V T +M  EDA+  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISYSKAVTNEEITLIEDKVNEIIRANHEVNTTLMATEDAVKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G +S  LCGGTHV   G+I    I +ES+I AGIRRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GNNSLELCGGTHVRRLGDIGCFKITNESAIAAGIRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-------EYRKLQLIHAKRK 778
           + G+     +  ++  LKS+ S LK ++  ++ +V  I E       E  K+ L H    
Sbjct: 701 VCGEFVIKLMREKENLLKSVESSLKTNKNELITKVNNILERNKGLEKELEKVHLAH---- 756

Query: 779 LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           L L+++ ++    +I  V  +   I  +++K L+   + L KK++  I++ + +    K 
Sbjct: 757 LDLSIDQINKEAEEIKGVKLIYQYIENLNNKVLRQAAENLTKKVEDLIVVYI-VGNSDKL 815

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S+ + V++ + D+FNAV++A+  +  LGG GGGG+  +AQ+GG +  K ++    + S L
Sbjct: 816 SITVAVSKAITDKFNAVNIAKELSLFLGGTGGGGQASLAQAGGHDIGKLNKIHEKLYSLL 875


>gi|51474024|ref|YP_067781.1| alanyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|59798518|sp|Q68VQ7|SYA_RICTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51460336|gb|AAU04299.1| Alanine translase [Rickettsia typhi str. Wilmington]
          Length = 877

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/881 (47%), Positives = 563/881 (63%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI   WDLLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T+Y  D+ A   W+KISGL  D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 VTIYHTDDTAASYWEKISGLRDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEEIYGG 188

Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+ +E  +R+IEIWN+VFMQ+EQ NK+ R  LPK SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADGI+P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A +LG  EPLM  LLP L   MG+ YPEL  A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAEGFISSILEQEEIRFKTTLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + +  Q
Sbjct: 369 LKLLTEETKTLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEELMLIQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE+YG+T+F+GY L           +  C+   +   
Sbjct: 428 KERARTSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL----------NEAKCKIIALIKN 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N ++  ++ +  Q              ++ +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLADTIQEVDTQ------------FLLIANQTPFYGESGGQMGDIGMIFSQDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G +    +    ID + R+ L I+HSATH+LH  L  ILG  V
Sbjct: 526 TLKYLRSIIVHKCILKKGKINIGENANFNIDIKYRKNLRIHHSATHILHAVLHKILGKQV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q GS +T   LRFD+ HSK IT+ E+  IED VN+II  N  V T +M  EDAI  GA 
Sbjct: 586 IQKGSLVTSTYLRFDINHSKAITNEEITLIEDKVNEIIRNNHEVNTTVMFTEDAIKQGAI 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I+SESSI AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGAFKIISESSIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLN 782
           + G+     +  +D  +K + S +K ++  ++ +V  I E  ++L+    K     L L+
Sbjct: 701 VCGEFVIKLIREKDNLIKLIESSVKTNKNELITKVTNILERNKELEKELEKAHLAGLDLS 760

Query: 783 VEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +IA +  +   +  +++K L+   + L +K+++ I++ +  G+    K S+
Sbjct: 761 IEQIKKQAEQIAGIKLLYKKVGNINNKILRQAAENLTQKLENLIVVYIAHGVG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D+FNA  +A+  +  LGG GGGG+  +AQSGG
Sbjct: 818 TVAVSKAITDKFNAGIIAKELSLFLGGSGGGGKASIAQSGG 858


>gi|239948196|ref|ZP_04699949.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922472|gb|EER22496.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 878

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/881 (47%), Positives = 566/881 (64%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAATSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG     +RVI DHLR+SSFLIADG++P+NEGR YVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFFYRVIADHLRASSFLIADGVIPSNEGRSYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+++DIL  R ++ +D   F + +  Q
Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLIEDILKNRDIS-VDHKGFEEQMLMQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAECKIIALIKD 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQMGDIGTIFAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEINLIEDKVNEIIRDNHEVNTTLMATEDAVKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRCTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+     +  +D  LKS+ S LK ++  ++ +V  I E  RKL+    K     L L+
Sbjct: 701 VCGEFVIKLMREKDNLLKSVESSLKTNKNELITKVNNILERNRKLEKELEKTHLASLDLS 760

Query: 783 VEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 761 IEQIEKQAEQITGIKLLHKKVGNIDNKILRQAAENLTKKLEDLIVVYIAEGIG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKYNAGIIAKELSLFLGGSGGGGQASLAQAGG 858


>gi|157965032|ref|YP_001499856.1| alanyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844808|gb|ABV85309.1| Alanyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 883

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/881 (46%), Positives = 563/881 (63%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 14  VRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 73

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 74  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 133

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 134 ATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 193

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   NNY+
Sbjct: 194 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYN 253

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 254 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 313

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 314 RRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKATLERG 373

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R ++ +D   F + +  Q
Sbjct: 374 LKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILKTRDIS-VDHKGFEEQMLMQ 432

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 433 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 482

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 483 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 530

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 531 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 590

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T  M  EDA+  GA 
Sbjct: 591 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAVKQGAM 650

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 651 ALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGVRRIEA 705

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++++    K     L L+
Sbjct: 706 VCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLASLDLS 765

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 766 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 822

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 823 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 863


>gi|205830251|sp|A8F323|SYA_RICM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 878

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/881 (46%), Positives = 563/881 (63%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   NNY+
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYN 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKATLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R ++ +D   F + +  Q
Sbjct: 369 LKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILKTRDIS-VDHKGFEEQMLMQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T  M  EDA+  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAVKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++++    K     L L+
Sbjct: 701 VCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLASLDLS 760

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858


>gi|229587224|ref|YP_002845725.1| alanyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|228022274|gb|ACP53982.1| Alanyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 878

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/881 (46%), Positives = 564/881 (64%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + +  Q
Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I +H  I++RG +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIIHKCILKRGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K     L L+
Sbjct: 701 VCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858


>gi|34581082|ref|ZP_00142562.1| alanyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28262467|gb|EAA25971.1| alanyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 878

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/881 (46%), Positives = 565/881 (64%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKANNHIHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WK+I+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAAAYWKQIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + +  Q
Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I +H  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K     L L+
Sbjct: 701 VCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760

Query: 783 VEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858


>gi|15893250|ref|NP_360964.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|20532256|sp|Q92G00|SYA_RICCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15620469|gb|AAL03865.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
          Length = 878

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/881 (46%), Positives = 565/881 (64%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + +  Q
Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           ++RAR   LG G   T+++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KARARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I +H  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K     L L+
Sbjct: 701 VCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 761 IEQIEKQSAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858


>gi|254717705|ref|ZP_05179516.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 768

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/777 (50%), Positives = 530/777 (68%), Gaps = 36/777 (4%)

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F L + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+
Sbjct: 1   FGLPKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFY 60

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A V
Sbjct: 61  DHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAV 120

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEG
Sbjct: 121 LQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEG 180

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ 
Sbjct: 181 RGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEET 240

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D  
Sbjct: 241 RFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTE 299

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+               
Sbjct: 300 GFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE--------------- 344

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T     ++ ++V+    V     G+ + VV +QTPFY E+GGQ GDTG   G
Sbjct: 345 --------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISG 396

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G  + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH A
Sbjct: 397 EGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEA 456

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  
Sbjct: 457 LRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAV 516

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +DAIA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+
Sbjct: 517 DDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRII 576

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           SE  + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL 
Sbjct: 577 SEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLE 636

Query: 771 -QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +L  A++KL L    +    +   +  VNF+  I++ V  ++LK + D  +K++ SG++
Sbjct: 637 RELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVV 696

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + +G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 697 LFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 753


>gi|114775361|ref|ZP_01450929.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114553472|gb|EAU55853.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 871

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/902 (45%), Positives = 564/902 (62%), Gaps = 44/902 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL++F   GH ++ SSSL+P  DPTLMFTN+GMV FK++F G E   Y+  TT
Sbjct: 3   TSEIRKKFLDYFAAEGHTIVDSSSLVPHGDPTLMFTNAGMVQFKHVFLGNESRPYRTATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT E  LD  
Sbjct: 63  SQKCVRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKHDAIRYAWQFLTGELKLDPA 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL+ITV++ED+EA+ +W K  G+ AD+I RI   DNFWSM +TGPCGPCSEIF+D G  +
Sbjct: 123 RLFITVFEEDDEAYDIWTKEVGIPADRIARIGAKDNFWSMGDTGPCGPCSEIFYDHGADV 182

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GG PG++EE G+RYIEIWNLVFMQ+++        LP  S+DTGMGLER+A V+Q   N
Sbjct: 183 WGGPPGTAEEDGDRYIEIWNLVFMQYDRDEDGTLTPLPHPSVDTGMGLERVAAVMQGVHN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYDIDLF  LI A+  +TG++   + +  V+ RV+ DHLRS SFL+ADG+LP+NEGRG+V
Sbjct: 243 NYDIDLFARLIDAAGALTGVRMGDDPVSDVSLRVLADHLRSVSFLLADGVLPSNEGRGFV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + RLLG  E  +  L+ AL  EMG  + EL +++  IE+ +R E+ERF K
Sbjct: 303 LRRILRRACRHGRLLGMYEAFIYKLVDALVAEMGDHFAELKESQGNIEQVIRIEEERFIK 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD+GL L++   +  GK   + G+  F LYDT G P D+  DIL    ++ +D+  F +
Sbjct: 363 TLDKGLKLVEQAAASAGKGGTIPGETLFALYDTFGFPTDLTADILKGTDIS-LDMDGFER 421

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +EEQR+RARA   G G     K  F L+E +G T+F+GYD L                 
Sbjct: 422 CMEEQRTRARAAWGGSGESALPKALFELREHHGPTEFLGYDTLSS--------------- 466

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGI 539
                     ++  +++ GE V+   +G++  ++ +QTPFYAE+GGQ GDTG   IGD I
Sbjct: 467 --------EGVITGLIRDGEAVDTLHAGEEGWLIANQTPFYAESGGQAGDTGLITIGDAI 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +++D +K    +FVH   V +G       +   +D   R  +  NH+ATHL+H  L  
Sbjct: 519 -FEVSDTRKMLSDLFVHTGKVVKGSFEAGSVVHFAVDEDRRAAIRRNHTATHLMHAVLRK 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +    LRFD  H KP++  E K IE  VN  I  N PV T++M++++A
Sbjct: 578 VLGEHVKQAGSLVNEQRLRFDFNHFKPVSEEERKVIEAEVNAAIWANDPVETKLMSQDEA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +ASGA AL G KY D VRVVS  +      S+ LCGGTHVS+TG+I    IVSE+ I AG
Sbjct: 638 VASGAMALFGEKYGDEVRVVSAGF------STELCGGTHVSATGDIGPFRIVSEAGIAAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKV----SQGNVVGRVEEIWEEYRKLQLIHA 775
           +RRIEA+TG  A   L+     L+  A  LKV    +   VV    ++ +  ++L  + A
Sbjct: 692 VRRIEAVTGSAAYQSLVADIHTLEEAAGHLKVRPFEAADAVVTLQGKLKDAEKELTSLRA 751

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEK 834
           K+   L ++DL   +  +VN +  +  EV   K+++  MD  + K++SGI++  G+    
Sbjct: 752 KQSTGL-LDDL-IKQAVEVNGVKLLAVEVSGVKDMRDFMDKAKGKLKSGILVF-GMKNGP 808

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT+DLL  ++A ++ R  A +  GG GGG+P MA +GG   +K  QA+AGVA+
Sbjct: 809 KVQLIAGVTQDLLGSYHAGNIVREVAMIC-GGKGGGKPDMAMAGGTEPDKLKQALAGVAA 867

Query: 895 FL 896
            +
Sbjct: 868 LI 869


>gi|311105349|ref|YP_003978202.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760038|gb|ADP15487.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 874

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/908 (44%), Positives = 557/908 (61%), Gaps = 53/908 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   T+ 
Sbjct: 4   SEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWNLVFMQFE+        LP+  +DTGMGLER+A V
Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ+  +NY+IDLF+HLI A+ + TG+K   +N +  +VI DH+R+ SFLI DG++P+NEG
Sbjct: 244 LQDVHSNYEIDLFQHLIAAAARETGIKNLEDNSL--KVIADHIRACSFLIVDGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL      + + L+ E+E
Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGDAYPELAATADRVAQVLKQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +LD  L+++ K   L+G   F LYDT+G P+D+  DI   R L  +D+ 
Sbjct: 362 RFGETLEHGMRILDSALANVPKGGQLDGMTLFTLYDTYGFPVDLTADICREREL-DVDMA 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+E QR +ARA           K+   L  +   T+F GY+ L             
Sbjct: 421 GFEVAMERQRDQARAAG-------KFKMAEGLSYEGADTRFEGYEKLE------------ 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +GV   V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG    
Sbjct: 462 --------LDGVK--VTALYVDGTQVQQVKAGQSAVVVLDATPFYAESGGQVGDTGLLEA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+R  + D  K   G+F HH  +E G L    +L+  +D   R +   NHSATHL+H A
Sbjct: 512 DGVRFAVADTLKIQAGVFGHHGELESGTLSVGDTLLARVDAVRRARTVRNHSATHLMHKA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD  RFD     P+T+ ++  +E  VN  I  N P V ++M  
Sbjct: 572 LRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQVMAY 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IVSE  +
Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVSEGGV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AG+RRIEAITG  A + +  Q+  L  +A  L+ +  ++  R+ ++ E+ + L+  L  
Sbjct: 686 AAGVRRIEAITGDNALAWVQNQNALLTQVAGMLRSTPADLPARIAQVQEQVKSLEKDLEQ 745

Query: 775 AKRKLQLNV-EDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           ++ KL  +   DL+     ++  +  ++  I +VD K L+ ++D L+ +++  +++L   
Sbjct: 746 SRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLATG 805

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S + K SV+  VT DL  R  A DL    A  + GG GGGRP MA  GG +      AIA
Sbjct: 806 SADGKISVVGGVTADLTGRVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDLAALPAAIA 864

Query: 891 GVASFLKK 898
            V  ++ +
Sbjct: 865 SVQKWVDE 872


>gi|293604526|ref|ZP_06686931.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292817107|gb|EFF76183.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 874

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/908 (44%), Positives = 559/908 (61%), Gaps = 53/908 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   T+ 
Sbjct: 4   SEIRRQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSEIFF
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFF 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWNLVFMQFE+  +     LP+  +DTGMGLER+A V
Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAEGNMPRLPRPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI A+ + TG+K   NN +  +VI DH+R+ SFLI DG++P+NEG
Sbjct: 244 LQGVHSNYEIDLFQKLIHAAARETGVKDLENNSL--KVIADHIRACSFLIVDGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL      + + L+ E+E
Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELASMADRVAQVLKQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +LD  L+++ K  +L+G   F LYDT+G P+D+  DI   R +  ID+ 
Sbjct: 362 RFGETLEHGMRILDTALANVPKGGVLDGTTLFTLYDTYGFPVDLTADICRERDVE-IDMP 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  ++E QR +ARA           K+   L  +   T+F GY+ L             
Sbjct: 421 GFEVSMERQRDQARAAG-------KFKMAEGLSYEGADTRFEGYEKL------------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                 +L N     V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG    
Sbjct: 461 ------ELDN---VKVTALYVDGTQVQQVQAGQNAVVVLDATPFYAESGGQVGDTGLLQA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+R  + D  K   G+F HH ++E G L    +L+  +D   R +   NHSATHL+H A
Sbjct: 512 DGVRFAVADTLKIQNGVFGHHGVLESGSLSVGDTLLARVDAVRRARTVRNHSATHLMHKA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS +  +  RFD     P+T+ ++  +E  VN  +  N P V ++M  
Sbjct: 572 LRQVLGAHVQQRGSLVDAEKTRFDFAQDAPMTAEQIARVEAIVNAEVLANQPTVAQVMAY 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IVSE  +
Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVSEGGV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AG+RRIEAITG  A + +  Q+  L  +A  L+ +  +V  R+ ++ E+ + L+  L  
Sbjct: 686 AAGVRRIEAITGDNALAWVQNQNALLTQIAGMLRSTPADVPARIAQVQEQIKALEKDLEQ 745

Query: 775 AKRKLQLNV-EDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           ++ KL  +   DL+     ++  +  ++  I +VD K L+ ++D L+ +++  +++L   
Sbjct: 746 SRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLATG 805

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S + K SV+  VT DL DR  A DL    A  + GG GGGRP MA  GG +      AIA
Sbjct: 806 SADGKISVVGGVTADLTDRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDLAALPAAIA 864

Query: 891 GVASFLKK 898
           GV  ++ +
Sbjct: 865 GVQKWVDE 872


>gi|262277414|ref|ZP_06055207.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262224517|gb|EEY74976.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 892

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/895 (45%), Positives = 577/895 (64%), Gaps = 53/895 (5%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67
           R TF  FF+KN H+++ SSSLIP NDPTLMF+NSGMV FKN+FTG EK  Y   TT QKC
Sbjct: 9   RETFKNFFKKNDHKVISSSSLIPQNDPTLMFSNSGMVQFKNVFTGVEKRDYNRATTSQKC 68

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
           VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+L+TK+F L + +L +
Sbjct: 69  VRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIAYAWELITKDFALPKNKLCV 128

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
           TV+ ED+EA+ LWKKI+G S DKII+I T+DNFWSM ETGPCGPCSEIF+D GE + GG 
Sbjct: 129 TVFSEDQEAYDLWKKIAGFSEDKIIKIPTSDNFWSMGETGPCGPCSEIFYDHGEHLFGGP 188

Query: 188 PGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
           PGS  E+G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLERMA VLQ   +NY I
Sbjct: 189 PGSKDEDGDRFIEIWNLVFMQYEQISKDKRVNLPKPSVDTGMGLERMAAVLQGTHDNYQI 248

Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
           DLF+ L+  S  +T  +   + I +HRVI DHLR+S FLIADG++P+NEGRGYVLRRIMR
Sbjct: 249 DLFQKLVDLSADITKTRINNDTIPSHRVISDHLRASCFLIADGLMPSNEGRGYVLRRIMR 308

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RAM +A  LG  + ++  ++  L  EM S Y EL +AK LI+ET+ +E+E+F   L  G+
Sbjct: 309 RAMRHANTLGSKDHVLSKMIDHLIKEMSSEYNELDRAKDLIKETITNEEEKFQSMLSNGM 368

Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++    + + K+  L+G+VAFKLYDT+G PLD+ +D      +  +D   FNQ +E+++
Sbjct: 369 KIIHDEKNKI-KNNTLSGEVAFKLYDTYGFPLDLTEDYFKPLKIK-VDTEKFNQLMEKRK 426

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
             AR    G GS + +KIWF LK+++G+T+F+GY                        + 
Sbjct: 427 QEARKSWKGSGSDSIDKIWFDLKDRHGSTEFVGYS-----------------------SE 463

Query: 487 GVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
              + V +IV Q GE + +A    K++++ +QT FYAE+GGQ+GD+G    +    ++ D
Sbjct: 464 KTEAKVNSIVNQDGEEILKAKEKDKIKIITNQTCFYAESGGQVGDSGIIKTETGTAEVED 523

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
            QK    +F+H   V+ G +       L I+ + R  +  NHSATHLLH AL   LG+HV
Sbjct: 524 TQKFFGSLFIHIGFVKEGYIEKNQDSYLEINLERRENIKSNHSATHLLHAALREELGNHV 583

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + PD LRFD ++SK I S + K I   VN  I +N  V+TR+M+ E AI  GA 
Sbjct: 584 AQRGSYVGPDRLRFDFSYSKQINSEQQKKINSRVNHFINKNDKVITRLMSPEKAIKEGAM 643

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY + VRVVS+   +  + S  LCGGTHV +TG+I    I++ESSI +G+RRIEA
Sbjct: 644 ALFGEKYGEEVRVVSMGKNNDKIFSLELCGGTHVENTGKIGQFSIINESSIASGVRRIEA 703

Query: 726 ITGQRARSHL----MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ- 780
           + G   +++L    + + E LK   + LK  +  ++ +++++  +Y+       ++++  
Sbjct: 704 LRGDELKTYLENKNLSKQENLKK--NKLKFEE--IINQIKKLKGDYKNFSEYQNEKQIND 759

Query: 781 -LN-VEDLSCHKIAD--------------VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            LN +  L    I D              +  ++ I+  + SK+++ ++D   K   + I
Sbjct: 760 ALNYLNKLRAKNILDDKNKNIITSNSKNGIEIINQILIGLSSKDIRGLVDQGTKTKDNTI 819

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I ++ + +++K S+ + ++++L +R++A + A+  +  LGG GGGGR   AQ+GG
Sbjct: 820 IFIISL-EDQKTSIGVGISQNLTNRYDAANFAKKISIYLGGKGGGGRKDFAQAGG 873


>gi|99036095|ref|ZP_01315128.1| hypothetical protein Wendoof_01000018 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 877

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/895 (44%), Positives = 561/895 (62%), Gaps = 51/895 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +   +
Sbjct: 3   LNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD+ 
Sbjct: 63  SQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKN 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G   
Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG--- 179

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                 + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   +N
Sbjct: 180 ----SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVHDN 235

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVLRR
Sbjct: 236 YDIDLFSALISKSQEYCG---RTENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFGKT 361
           ++RRA  Y  LLGY + L+  + P L     SAY   EL++AK LIE TL+SE+E F  T
Sbjct: 293 LIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFKDT 352

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  DIL  + +   D   F+ A
Sbjct: 353 LMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDILKEKKI-NFDQKGFDDA 411

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+ RARA   G G  + E++WF L  K+G T+F+GY+    S     D K+L     
Sbjct: 412 MGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYEFNEVS-----DAKILA---- 462

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                        +  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I     +
Sbjct: 463 ------------IVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSDRSI 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH  L  IL
Sbjct: 511 IIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLRKIL 570

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +   AI 
Sbjct: 571 GDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQAID 630

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS+  G+R
Sbjct: 631 EGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAFGVR 684

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQ 780
           RIEA+TGQ A +++   +  LK +A F+K     +  R+  + +E++K +  I    K  
Sbjct: 685 RIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLYKKL 744

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           ++ E++   +I  +NF+SH  +++ +  ++  +  LQ++    +I      K+K  +VLI
Sbjct: 745 VSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKDK--TVLI 800

Query: 841 V-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           + V++DL+++ +A +L  ++ K       GG   +AQ+ G + NK D AI  + S
Sbjct: 801 IKVSKDLINKISAKELISIAVK----KNCGGNAELAQT-GCDSNKIDDAITAIYS 850


>gi|157829157|ref|YP_001495399.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933886|ref|YP_001650675.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|205830193|sp|B0BVK9|SYA_RICRO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830194|sp|A8GU16|SYA_RICRS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157801638|gb|ABV76891.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908973|gb|ABY73269.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 877

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/881 (46%), Positives = 561/881 (63%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + +  Q
Sbjct: 369 LKLLTEETETLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           +  AR   LG G   T ++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KELARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTISAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI  GA 
Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
           + G+   + +   D  LKS+ S  K ++  ++ +V  I E  ++++    K     L L+
Sbjct: 701 VCGEFVITLMRENDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858


>gi|42520697|ref|NP_966612.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|48428514|sp|P61709|SYA_WOLPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42410437|gb|AAS14546.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 877

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/895 (44%), Positives = 561/895 (62%), Gaps = 51/895 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +   +
Sbjct: 3   LNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD+ 
Sbjct: 63  SQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKN 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G   
Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG--- 179

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                 + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   +N
Sbjct: 180 ----SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVHDN 235

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVLRR
Sbjct: 236 YDIDLFSALISKSQEYCG---RTENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFGKT 361
           ++RRA  Y  LLGY + L+  + P L     SAY   EL++AK LIE TL+SE+E F  T
Sbjct: 293 LIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFKDT 352

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  D+L  + +   D   F+ A
Sbjct: 353 LMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDVLKEKKI-NFDQKGFDDA 411

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+ RARA   G G  + E++WF L  K+G T+F+GY+    S     D K+L     
Sbjct: 412 MGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYEFNEVS-----DAKILA---- 462

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                        +  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I     +
Sbjct: 463 ------------IVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSDRSI 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH  L  IL
Sbjct: 511 IIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLRKIL 570

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +   AI 
Sbjct: 571 GDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQAID 630

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS+  G+R
Sbjct: 631 EGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAFGVR 684

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQ 780
           RIEA+TGQ A +++   +  LK +A F+K     +  R+  + +E++K +  I    K  
Sbjct: 685 RIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLYKKL 744

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           ++ E++   +I  +NF+SH  +++ +  ++  +  LQ++    +I      K+K  +VLI
Sbjct: 745 VSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKDK--TVLI 800

Query: 841 V-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           + V++DL+++ +A +L  ++ K       GG   +AQ+ G + NK D AI  + S
Sbjct: 801 IKVSKDLINKISAKELISIAVK----KNCGGNAELAQT-GCDSNKIDDAITAIYS 850


>gi|238651102|ref|YP_002916960.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|238625200|gb|ACR47906.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 878

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/881 (46%), Positives = 560/881 (63%), Gaps = 39/881 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHIPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           LPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   NNYD
Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM
Sbjct: 249 IDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  TL+RG
Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAENFISSILEQEEIRFKATLERG 368

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + +  Q
Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           + RAR   LG G   T ++WF +KE++G+T+F+GY L           +  C+   +   
Sbjct: 428 KERARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           N + + +K I  Q  ++             +QTPFY E+GGQ+GD G        +++ D
Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +LG HV
Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+  GA 
Sbjct: 586 IQKGSLVAPTYLRFDISHSKTVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAVKQGAT 645

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+RRIEA
Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCSGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782
             G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K     L L+
Sbjct: 701 ACGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760

Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838
           +E +     +I  +  +   +  +D+K L+   + L KK++  I++ +  GI    K S+
Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG
Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858


>gi|190571072|ref|YP_001975430.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019592|ref|ZP_03335398.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357344|emb|CAQ54775.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995014|gb|EEB55656.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 860

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/899 (45%), Positives = 572/899 (63%), Gaps = 56/899 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  F++FF  N HE +PSS LIP +DPTLMFTN+GMV FKNIFTG +K   +   +
Sbjct: 3   LNEIRERFIKFFVNNNHEQVPSSPLIPEHDPTLMFTNAGMVQFKNIFTGTQKTEMKRAVS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  LD+ 
Sbjct: 63  SQKCLRAGGKHNDLENVGYTSRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLDKN 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL ITVY  D+EA+++W+KISG S DKIIRITT+DNFWSM  TGPCGPCSEIF+D G   
Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSDDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHGN-- 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                 +  E +R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   +N
Sbjct: 181 -----SALHEDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERIAAVMQNVHDN 235

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF  L+  S++  G      N V H++I DHLR+++FLIA+G+LP NEGR YVLRR
Sbjct: 236 YDIDLFSALVSKSQEYCG---NTENKVAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALC-----TEMGSAYPELIQAKLLIEETLRSEDERF 358
           ++RRA  Y  LLGY + L+  + PAL        MG AYPELI+AK LIE TL+SE+E F
Sbjct: 293 LIRRAARYIHLLGYNDSLLNLVFPALIDGTSLAYMGDAYPELIRAKSLIETTLKSEEENF 352

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL +G+ LLD   + L   + L+G+ AFKLYDT+G PLDI  DIL  R +   D   F
Sbjct: 353 KDTLMKGINLLDKFTADLKSGDTLSGESAFKLYDTYGFPLDITLDILKERKI-NFDQKGF 411

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + A++EQ+ RARA+  G G  + E++WF+L +++G T+F+GY+        +++ K    
Sbjct: 412 DNAMKEQKERARANWTGSGEKSVEQVWFNLIDQFGKTEFVGYE--------RDEVK---- 459

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GD 537
                     ++++  I  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I  D
Sbjct: 460 ---------DATVLAIISSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGNFIKSD 510

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G  L + +   K   +++H  IVE G +R   ++  +I+ + R+ L  NHSATHLLH AL
Sbjct: 511 GSTLTVENTN-KINDLYLHRCIVESGSVRKGDTVTASINKKRRQDLRRNHSATHLLHFAL 569

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV+Q GS + P+ LRFD +H+KP+T  +L S+ED VN +I +NL   T++   +
Sbjct: 570 RKILGDHVTQKGSLVAPNRLRFDFSHNKPVTQDQLSSVEDIVNSLIRENLSTSTKVQGMD 629

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +AI  GA AL G KY D VRVV +        S  LCGGTHV  TGEI L  I +E S+ 
Sbjct: 630 EAIDEGAMALFGEKYGDNVRVVKIG------DSKELCGGTHVERTGEIGLFKIAAECSVA 683

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAK 776
           + +RRIEA+TGQ A +++   +  LK +A  +K     ++ R+  + +E ++ ++ I   
Sbjct: 684 SRVRRIEALTGQEAINYVRNNEISLKKVAECVKAPVNEIISRLSILSQERKEFEVKIKNL 743

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            K  ++VE +   +I  +NF+SH  + V    ++    ALQ++    +I  + I K+K  
Sbjct: 744 YKKLISVETVKSTEINGINFVSHTFNNVPGSIIREF--ALQQQKPKTVIAFMVIEKDK-- 799

Query: 837 SVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +VLIV V++DL ++ NA +L       L     GG   +AQ+G  N NK D AI  + S
Sbjct: 800 TVLIVKVSKDLTNKINAKEL----VSTLTRRDCGGNAELAQTGCDN-NKIDDAITAIHS 853


>gi|296282673|ref|ZP_06860671.1| alanyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 886

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/890 (47%), Positives = 558/890 (62%), Gaps = 34/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFLEFF+   H+ + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MTSTNDIRRTFLEFFESRDHKRVASAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+EF L
Sbjct: 61  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHNAWTLLTEEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF LW+KI+GL  D+IIRI T DNFW+M + GPCGPCSEIF+D G
Sbjct: 121 DKNRLLATVYHTDDEAFDLWRKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFWDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS EE G+R++EIWNLVFMQ EQ+  +    LP  +IDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPEEDGDRFVEIWNLVFMQNEQRGGEIIGDLPNQNIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD D F+ LI+++E           I ++RVI DHLR++ FLIADG+LP+NEGRGY
Sbjct: 241 VHNNYDTDTFRTLIESTEAQLHADATDYTIASYRVIADHLRATGFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG   PLM  L+P L  EMG AYPEL + + LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKTPLMHRLVPTLVGEMGQAYPELGRGQALIEETLEREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     LGK + L+G+VAFKLYDT+G P D+ +D L  +G+A +D   F+
Sbjct: 361 ETLEKGLRLLDEATGSLGKGDQLDGEVAFKLYDTYGFPYDLTEDALRGQGIA-VDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR  ARA   G G     ++WFS+ E+ GAT+F GY   +G              
Sbjct: 420 AAMARQREAARAAWKGSGQAADSEVWFSIAEREGATEFTGYSATQG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY-AEAGGQLGDTGCAIGDG 538
                       V AIV+ G  V  A +G+ V ++ +QTPFY    G           DG
Sbjct: 466 ---------EGQVVAIVKDGVEVTSAAAGEDVVLLTNQTPFYGESGGQSGDSGSITTHDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ + D  K    +  H   +E G +R    + LT+D Q R ++  NHSATHLLH AL 
Sbjct: 517 LRIAVRDTGKPLGRLHTHQGKIEAGEVRVGDEVRLTVDEQRRNRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG  V+Q GS +  D LRFD ++ + I    L  IE +VN  I  N  V TR+M  +D
Sbjct: 577 RRLGDQVTQKGSLVAEDYLRFDFSYPEKIDREGLDRIEQDVNSQIRGNSEVGTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A+GA AL G KY D VRV+S+  +     S  LCGGTHV  TG+I L  I+ ESS+ +
Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRDADADFSIELCGGTHVERTGDIGLFAIIGESSVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG  A  +L  +   L  ++  L  +    V +++ +  + + L  +L  AK
Sbjct: 697 GVRRIEALTGNAASEYLRTRANALNEISGKLGATPDAAVAQLDALLAQRKTLERELADAK 756

Query: 777 RKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           R L L     +   +S   I  V F   +I  +D KEL+ ++DA ++++ SGI  +   +
Sbjct: 757 RALALSGGGGDGPQVSDETINGVTFSGQVIEGLDPKELRPLLDAAKQRLGSGIAAICA-T 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            + KA+  + VT+DL DRF+AV+L R     LGG GGGGR  MAQ GGP+
Sbjct: 816 NDGKAAFAVAVTDDLTDRFSAVELVRAGVAALGGKGGGGRADMAQGGGPD 865


>gi|317403428|gb|EFV83940.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 874

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/908 (44%), Positives = 553/908 (60%), Gaps = 53/908 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   T+ 
Sbjct: 4   SEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWNLVFMQFE+        LP+  +DTGMGLER+A V
Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI A+ + TG+K   NN +  +VI DH+R+ SFLI DG++P+NEG
Sbjct: 244 LQHVHSNYEIDLFQNLIAAAARETGVKDLENNSL--KVIADHIRACSFLIVDGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG T P    L+P L  EMG AYPEL      + + L+ E+E
Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTRPFFHRLVPDLVAEMGEAYPELAATAERVAQVLKQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +LDG L+++ K   L+G   F LYDT+G P+D+  DI C      +D+ 
Sbjct: 362 RFGETLEHGMRILDGALANVPKGGQLDGTTLFTLYDTYGFPVDLTADI-CREREVDVDMA 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+E QR +ARA           K+   L  +   T+F GY+ L             
Sbjct: 421 GFEVAMERQRDQARAAG-------KFKMAEGLSYEGAETRFEGYEKL------------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                 +L N     V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG    
Sbjct: 461 ------ELDN---VKVTALYVDGTQVQQVQAGQSAVVVLDATPFYAESGGQVGDTGLLEA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+R  + D  K   G+F HH  +E G L    +++  +D   R +   NHSATHL+H A
Sbjct: 512 AGVRFAVGDTLKIQSGVFGHHGTLEEGKLAVGDTVLARVDAVRRARTVRNHSATHLMHKA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD  RFD     P+T+ ++  +E  VN  I  N P V ++M  
Sbjct: 572 LRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQVMAY 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IVSE  +
Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVGRTGDIGLFKIVSEGGV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AG+RRIEAITG  A + +  Q   L  +A  L+ +  ++  R+ ++ ++ ++L+  L  
Sbjct: 686 AAGVRRIEAITGDNALAWVQNQSALLAQVAGMLRSTPADLPARISQVQDQVKQLEKDLEQ 745

Query: 775 AKRKLQLNV-EDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           ++ KL  +   DL+     ++  +  ++  I +VD K L+ ++D L+ +++  +++L   
Sbjct: 746 SRSKLAASAGNDLASSAAVEVKGIKLLAASIGDVDPKALRGMVDNLKDRLKPAVVLLATG 805

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S + K SV+  VT DL +R  A DL    A  + GG GGGRP MA  GG +      AIA
Sbjct: 806 SADGKISVVGGVTADLTNRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDIAALPAAIA 864

Query: 891 GVASFLKK 898
            V  ++ +
Sbjct: 865 SVQKWVDE 872


>gi|187478846|ref|YP_786870.1| alanyl-tRNA synthetase [Bordetella avium 197N]
 gi|123514444|sp|Q2KY72|SYA_BORA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115423432|emb|CAJ49966.1| alanyl-tRNA synthetase [Bordetella avium 197N]
          Length = 873

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/908 (44%), Positives = 554/908 (61%), Gaps = 54/908 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+EK  Y   T+ 
Sbjct: 4   SEIRQKFLQFFQSKGHSIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKEKRPYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWELLTTVYKLPVEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+A V
Sbjct: 184 DHGPDIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI A+ + TG++   +N +  +VI DH+R+ SFLI DG++P+NEG
Sbjct: 244 LQGVHSNYEIDLFQKLITAAARETGVQDLHDNSL--KVIADHIRACSFLIVDGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG T+P    L+P L  +MG AYPEL      + + L+ E+E
Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFYRLVPDLVAQMGEAYPELANMAERVGQVLKQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +LD  L+ + K  +L+G+  F LYDT+G P+D+  DI C      ID+ 
Sbjct: 362 RFGETLEHGMKILDVALAQVPKGGLLDGNTLFTLYDTYGFPVDLTADI-CREREVEIDMA 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+E QR +ARA           K+   L  +   T+F GY+ L  S          
Sbjct: 421 GFEAAMERQRDQARAAG-------KFKMAEGLNYEGAQTRFEGYEQLELS---------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V A+   G   ++  +GQ+  VV D TPFYAE+GGQ+GDTG  + 
Sbjct: 464 ------------GAKVTALYVDGTQTDQVRAGQQAVVVLDATPFYAESGGQVGDTGLLVA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+R  + D  K   G+F HH ++E G+L+   +L+  +D   R +   NHSATHL+H A
Sbjct: 512 DGLRFAVADTLKVQAGVFGHHGLLEEGVLKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     R+M  
Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQAAQARVMAY 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IVSE  +
Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVSEGGV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AG+RR+EAITG  A   +  Q+  L+  A  L+     +  R+ ++ ++ + L+  L  
Sbjct: 686 AAGVRRVEAITGDNALVWVQEQNALLQRAAGVLRSPVAELPERIAQVQDQVKALEKDLEQ 745

Query: 775 AKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A+ KL      ++ D S  +I  V  ++ +I++VD K L+ ++D L+ K++  I++L   
Sbjct: 746 ARAKLAASAGNDLADKSAVEIKGVKVLAAVINDVDPKALRGMVDNLKDKLKPAIVLLAA- 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S + K S++  VT D   +  A DL    A  + GG GGGRP MA  GG +      AIA
Sbjct: 805 SADGKISLVGGVTADQTAKVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDVAALPAAIA 863

Query: 891 GVASFLKK 898
            V  ++ +
Sbjct: 864 SVQDWVNE 871


>gi|317493956|ref|ZP_07952373.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918283|gb|EFV39625.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 875

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/909 (44%), Positives = 578/909 (63%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFYHSKGHQIVESSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFNIWADEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI A+ +VTG     +  +  RVI DH+RS +FL++DG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAATAKVTGATDLSSKSL--RVIADHIRSCAFLVSDGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  ++G  E     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGNMVGAKETFFYKLVAPLIEVMGPAADELKRQQSMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G PLD+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDDELSKLSGD-TLDGETAFRLYDTYGFPLDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D I F +A+EEQR RAR  S G G+      + S+    GA++F GYD           
Sbjct: 420 VDEIGFERAMEEQRRRARESS-GFGAD-----YNSMIRVDGASKFSGYD----------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   S V A+ + G+ V+   +G++  VV ++TPFYAE+GGQ+GD G
Sbjct: 463 ------------HNQQHSSVTALFRDGQAVDVLNAGEEGVVVLNETPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+   +TD QK  + I  H   V +G ++   S+  TID   R ++ +NHSATHL
Sbjct: 511 ELTAQGVSFVVTDTQKYGQAIG-HQGKVAQGSVKVGDSVEATIDEARRSRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS ++   LRFD +H + +   +++ +ED VN  I +NLP+ T 
Sbjct: 570 LHAALRQVLGDHVSQKGSLVSDRNLRFDFSHFEAMKPEQIRQVEDIVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ EDA A GA AL G KY++ VRV+S+     G  S+ LCGGTH   TG+I L  I S
Sbjct: 630 IMDLEDAKAKGAMALFGEKYDESVRVLSM-----GDFSTELCGGTHARQTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+   AG+RRIEA+TG+ A + +    + L+  AS +K    +V  ++  + ++ R+L+ 
Sbjct: 685 EAGTAAGVRRIEAVTGEGAIAVMHQDADALREAASLVKSDAHSVAEKIRAVMDKTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DV  +  ++S++D   +K L++++D L+ ++ SG+++L
Sbjct: 745 ELQQLKDQQAAQESASLSSKAVDVKGVKLLVSQLDNVEAKMLRTMVDDLKNQLGSGVVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + E K S++  VT+DL D+  A +L  + A+ + GG GGGRP MA +GG +     Q
Sbjct: 805 A-TTAEGKVSLVAGVTKDLTDKVKAGELIGMVAQQV-GGKGGGRPDMAMAGGSDATALPQ 862

Query: 888 AIAGVASFL 896
           A+AGV +++
Sbjct: 863 ALAGVEAWV 871


>gi|33602167|ref|NP_889727.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|41018190|sp|Q7WHL6|SYA_BORBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33576605|emb|CAE33683.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 874

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/906 (44%), Positives = 554/906 (61%), Gaps = 53/906 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+  T+ 
Sbjct: 4   SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+A V
Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI A+ + TG+K   +N +  +VI DH+R+ +FLI DGI+P+NEG
Sbjct: 244 LQHVHSNYEIDLFQKLIAAAARETGVKDLADNSL--KVIADHIRACAFLIVDGIIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL Q    + + LR E+E
Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   RG+  +D+ 
Sbjct: 362 RFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERGVE-VDMA 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++ QR +ARA           K+   L  +   T+F GY+ L             
Sbjct: 421 GFEAAMQRQREQARAAG-------KFKMAEGLSYEGAETRFEGYESLE------------ 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +GV   V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG    
Sbjct: 462 --------LSGVK--VTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL+H A
Sbjct: 512 GGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++M  
Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAY 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  +VSE  +
Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVRRTGDIGLFKVVSEGGV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L  +L  
Sbjct: 686 AAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIVQVQEQLKALEKELEQ 745

Query: 775 AKRKLQLNV-EDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A+ KL  +   DL+     +V     ++  I +VD K L+ ++D L+ +++  +++L   
Sbjct: 746 ARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAG 805

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S + K S++  VT DL  R  A DL    A  + GG GGGRP MA  GG +      A+A
Sbjct: 806 SADGKISLVGGVTADLTGRIKAGDLVGFVAGQV-GGKGGGRPDMAMGGGTDLAALPAAVA 864

Query: 891 GVASFL 896
            V  ++
Sbjct: 865 SVQKWV 870


>gi|330813881|ref|YP_004358120.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486976|gb|AEA81381.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 900

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/909 (44%), Positives = 570/909 (62%), Gaps = 52/909 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           MSN  +  +R TF +FF+ N H+++ SS L+P NDPTLMF NSGMV FKN+FTG E+  Y
Sbjct: 1   MSNKTLQDVRKTFKDFFKANDHQIVDSSPLVPQNDPTLMFANSGMVQFKNVFTGLEQRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +  TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW L+TKE+
Sbjct: 61  KRATTAQKCVRAGGKHNDLENVGFTPRHHTFFEMLGNFSFGDYFKEEAINYAWQLITKEY 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L + +LY+TV+ ED+EA+ LW KI+G + D+II+I T+DNFWSM +TGPCGPCSEIF+D
Sbjct: 121 SLPKDKLYVTVFSEDQEAYDLWHKITGFNEDRIIKIPTSDNFWSMGDTGPCGPCSEIFYD 180

Query: 179 QGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ + GGLPG+  E+G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLERM  VL
Sbjct: 181 HGDHLFGGLPGTKDEDGDRFIEIWNLVFMQYEQVSKDKRINLPKPSVDTGMGLERMTAVL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NY IDLFK +I  +E +   K    N  ++RVI DHLR+S+FLI+DG+LP+NEGR
Sbjct: 241 QGTHDNYQIDLFKKIILDTESLFEQKLSEKNTASYRVIADHLRASAFLISDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM ++ +LG T+P++  +LP +   M   YP+L  AK LI+ET+ +E+ER
Sbjct: 301 GYVLRRIMRRAMRHSNVLGKTDPILYKVLPTIIELMKEEYPQLENAKDLIKETVVTEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F   L  GL +L+  +  + KDE L G VAFKLYDT+G P+D+ QD+L  + +  ID   
Sbjct: 361 FSSLLKNGLKILNDEVKKI-KDETLPGSVAFKLYDTYGFPVDLTQDVLKEKNIK-IDHDE 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSL-----KEKYGATQFIGYDLLRGSKFMKED 472
           F +  E+ +  ARA   G GS   +KIWF +     KEK   T+F GY    GS      
Sbjct: 419 FKKLREQSKVEARASWKGTGSVGIDKIWFEIVSGQNKEKLADTEFFGY----GS------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        + + S + +IV++ +   E   G    ++F+QT FYAE+GGQ+ DTG
Sbjct: 469 -------------DQIESKLLSIVKEKKASLEIREGDSASLIFNQTVFYAESGGQISDTG 515

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               + +  +++D QK     +VH  +V++G L+   + +L ID + R ++  NHSATHL
Sbjct: 516 TIESNEVLFEVSDTQKIFGTFYVHSGVVKKGTLKLGDNFILKIDKKRRDKIKCNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HVSQ GS + PD LRFD +HSKPI+  E+  +  NVN ++     V T 
Sbjct: 576 LHAALREKLGKHVSQKGSYVGPDRLRFDFSHSKPISKQEIVELNKNVNAVVINGGEVKTT 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + AI  GA AL G KY D VRVV++   +    S  LCGGTHV+    I    I++
Sbjct: 636 LMTPKKAIEQGAMALFGEKYGDEVRVVTMGNFNNKTFSIELCGGTHVTELSTIDNFEIIN 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQD----EKLKSLASFLKVSQGNVV---GRVEEIWE 765
           ESSI +G+RRIEA+ G    +H    +    EK  SL S +K  + N+    G +E+  +
Sbjct: 696 ESSIASGVRRIEALRGDELSTHKQSLNKLAKEKETSLNSQIKGLESNIKKLNGNLEDFKD 755

Query: 766 EYRKLQLI---------HAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDA 815
              +++L+         + K  LQ + ++ +  + + D+      I  +  K+L++++D 
Sbjct: 756 FSPEVKLVKLKSLYESLYKKNILQDSKKNIIKDYPLKDLTVRIQYIYGLSGKDLRTIVDD 815

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +K+I S  +       + K ++ + +T++L +  +A   A+  +K L G GGGGR   A
Sbjct: 816 NKKEIGSSAVFTFS-ELDNKLNIAVGITDELTNNLDASFFAKEISKFLKGKGGGGRKDFA 874

Query: 876 QSGG-PNGN 883
           Q+GG P  N
Sbjct: 875 QAGGEPPSN 883


>gi|117923331|ref|YP_863948.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|205830136|sp|A0L3J9|SYA_MAGSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117607087|gb|ABK42542.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 878

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/890 (44%), Positives = 562/890 (63%), Gaps = 48/890 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  F+ FFQ++GH  + SSSL+P NDPTL+FTN+GMV FK++F G+E+  Y    
Sbjct: 2   NGNEIRKRFVAFFQQHGHTHVESSSLVPRNDPTLLFTNAGMVQFKSLFLGEERRDYSRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+L W  +T++  +D 
Sbjct: 62  SAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIRLGWRFVTEDLGIDA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +RL +TVY ED+EA+ +W +  GL ADK+IRI T DNFWSM +TGPCGPCSEIF+D G+ 
Sbjct: 122 QRLLVTVYSEDDEAYAIWTQQIGLPADKVIRIPTTDNFWSMGDTGPCGPCSEIFYDYGDT 181

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG PGS  E+G+R++EIWNLVFMQ+++ +      LPK SIDTG GLER+A+VLQ KT
Sbjct: 182 VAGGPPGSEDEDGDRFVEIWNLVFMQYDRSSDGTLTPLPKPSIDTGAGLERLASVLQGKT 241

Query: 242 NNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNYD DLF+ LI+A+  + G+         +V+ RVI DH+RS SFLIADG+LP+NEGRG
Sbjct: 242 NNYDTDLFQPLIKAAAALAGVDDTTCSAEQLVSLRVIADHIRSVSFLIADGVLPSNEGRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRIMRR M + RLLG  +P M  L+  L   MG  YPEL   +  +   + +E++RF
Sbjct: 302 YVLRRIMRRGMRHGRLLGLEQPFMHKLVETLGALMGDTYPELTAQRKTLAMVIETEEKRF 361

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL  GL  L+  ++ L   ++L+G   F LYDT G PLD+  DIL  R + G+D   F
Sbjct: 362 AATLGTGLKHLEEAVAGLRMGDVLDGKTLFTLYDTFGFPLDLTADILRDREI-GVDQEGF 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +  ++EQR RARA   G G  +   ++  L E+ GA++F+GY                  
Sbjct: 421 SACMKEQRERARAAWSGSGEASLGALYHPLLERVGASEFLGY------------------ 462

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537
                +    S+ V A+++ G  VE   +G +  VV +QTPFY E+GGQ+GD G   + +
Sbjct: 463 -----VHESASASVVALIKNGAEVESLTAGDEGSVVCNQTPFYGESGGQVGDRGVIQLAN 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R  +TD QK    + VHH  +  G +       L +D   R+ + ++HSATHL+HHAL
Sbjct: 518 GARFTVTDTQKPLPDLIVHHGKMVTGTVHLGDHAELQVDGATRQAIRLHHSATHLMHHAL 577

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++ + LR D +H + ++  EL+++ED VN  I  N+   T +M  +
Sbjct: 578 RAVLGEHVKQAGSHVSAERLRLDFSHFQGMSEEELRAVEDRVNGAILSNVSQETAVMTPQ 637

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+A+GA AL G KY D VRVV +        S  LCGGTHVS +G++ + +I+SES++ 
Sbjct: 638 EAVAAGAMALFGEKYGDEVRVVRIG------DSMELCGGTHVSRSGDMGIFHILSESAVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFL-----KVSQG--NVVGRVEEIWEEYRKL 770
           AG+RR+EA+ G RAR+   G  E LK+ A+ L     K+++G   ++G+ +E+ +   KL
Sbjct: 692 AGVRRLEAVCGGRARAIFRGDQEALKAAAALLKTQPNKLAEGIERLLGKQKELEKSLEKL 751

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           Q   A   ++  +E     ++  +  ++  +  VD K L+ ++D ++ K+ SG+I+L   
Sbjct: 752 QSAQAGGMVEALLE--QAVEVGGIKLLAVEVKGVDGKALREMVDQVKDKLGSGVILLA-- 807

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               K S++  VT+DL   R  A DL   +A ++ GG GGGRP MAQ GG
Sbjct: 808 LGGDKVSLVAGVTKDLAGKRVKAGDLMAFAAAMV-GGKGGGRPDMAQGGG 856


>gi|157148231|ref|YP_001455550.1| alanyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|205830024|sp|A8ANQ1|SYA_CITK8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157085436|gb|ABV15114.1| hypothetical protein CKO_04048 [Citrobacter koseri ATCC BAA-895]
          Length = 875

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/894 (45%), Positives = 568/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVVP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAISAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFAFAVSDTQKYGQAIG-HIGTLSTGSLKVGDAVQADVDDARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ILG+HV+Q GS +    LRFD +H++ +  +E++++ED VN  I +NLPV T 
Sbjct: 570 MHAALRQILGTHVAQKGSLVNDKVLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IVS
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  + ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATLHAESDRLSDIAQLLKGDSQNLGEKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|33597425|ref|NP_885068.1| alanyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|41018188|sp|Q7W6N4|SYA_BORPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33573852|emb|CAE38162.1| alanyl-tRNA synthetase [Bordetella parapertussis]
          Length = 874

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/906 (44%), Positives = 554/906 (61%), Gaps = 53/906 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+  T+ 
Sbjct: 4   SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+A V
Sbjct: 184 DHGPEIWGGPPGSLEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI A+ + TG+K   +N +  +VI DH+R+ +FLI DGI+P+NEG
Sbjct: 244 LQHVHSNYEIDLFQKLIAAAARETGVKDLADNSL--KVIADHIRACAFLIVDGIIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL Q    + + LR E++
Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEK 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   RG+  +D+ 
Sbjct: 362 RFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERGVE-VDMA 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++ QR +ARA           K+   L  +   T+F GY+ L             
Sbjct: 421 GFEAAMQRQREQARAAG-------KFKMAEGLSYEGAETRFEGYESLE------------ 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +GV   V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG    
Sbjct: 462 --------LSGVK--VTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL+H A
Sbjct: 512 GGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++M  
Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAY 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  +VSE  +
Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVRRTGDIGLFKVVSEGGV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L  +L  
Sbjct: 686 AAGVRRIEAITGDNALAWVQDQNVLLQRAAGVLRAPAHELPERIAQVQEQLKALEKELEQ 745

Query: 775 AKRKLQLNV-EDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A+ KL  +   DL+     +V     ++  I +VD K L+ ++D L+ +++  +++L   
Sbjct: 746 ARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAG 805

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S + K S++  VT DL  R  A DL    A  + GG GGGRP MA  GG +      A+A
Sbjct: 806 SADGKISLVGGVTADLTGRIKAGDLVGFVAGQV-GGKGGGRPDMAMGGGTDLAALPAAVA 864

Query: 891 GVASFL 896
            V  ++
Sbjct: 865 SVQKWV 870


>gi|308187884|ref|YP_003932015.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308058394|gb|ADO10566.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 875

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/912 (46%), Positives = 567/912 (62%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GHE++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFSL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKERLWVTVYETDDEAYNIWADEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+IDLF+ LIQA  QVTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ISAVLQHVNSNYEIDLFQKLIQAVAQVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLVEVMGAAGEELQRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           SE+++F +TL+RGL LLD  L  L  D  L+G++ F+LYDT G P D+  D+   R L  
Sbjct: 362 SEEDQFARTLERGLALLDEELEKLQGD-TLDGEIVFRLYDTFGFPADLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+E+QR RAR  S G G+  +  I         A+ F GYD L         
Sbjct: 420 IDEAGFEQAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYDQL--------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     DL    ++ VKA+   GE V+E  +GQ   VV D+TPFY E+GGQ+GDTG
Sbjct: 465 ----------DL----AATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATHL
Sbjct: 511 LLKGKNAEFSVQDTQKYGQAIG-HVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T 
Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPHEIRQVEDIVNAQIRRNLPVETE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A + GA AL G KY+ RVRV+++     G  S  LCGGTH + TG+I L  I +
Sbjct: 630 VMDLEAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768
           ES   AGIRRIEAITG+ A + +  Q  +L+ LA  +K +  N    V G V+ +    +
Sbjct: 685 ESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDYVRALEK 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +   LS + I DV  +  ++SE   V+ K L++++D L+ ++ S II
Sbjct: 745 ELQQLRDQQAAQESAS-LSSNAI-DVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ E K S++  VT+DL DR  A +L A L+ +V  GG GGGRP MAQ+GG + + 
Sbjct: 803 VLATVA-EGKVSLIAGVTKDLTDRVKAGELIAGLAQQV--GGKGGGRPDMAQAGGTDADA 859

Query: 885 ADQAIAGVASFL 896
              A+AGV S++
Sbjct: 860 LKGALAGVESWV 871


>gi|191171366|ref|ZP_03032915.1| alanyl-tRNA synthetase [Escherichia coli F11]
 gi|190908300|gb|EDV67890.1| alanyl-tRNA synthetase [Escherichia coli F11]
          Length = 876

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/909 (44%), Positives = 569/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    E+L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDATALPA 862

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 863 ALASVKGWV 871


>gi|283786756|ref|YP_003366621.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282950210|emb|CBG89846.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 875

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 567/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+   +IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRARIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ + GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHVWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI A  +VTG     N  +  RVI DH+RS +FL+ADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIDAVAKVTGATDLSNKSL--RVIADHIRSCAFLVADGVVP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVGPLIEVMGSAGEELKRQQALVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GY+ L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYEHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GDTG
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQQAVVVLDQTPFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVSDTQKYGQAIG-HIGTLSAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H++ +  +E++++ED VN  I +NLPV T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKLLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 VMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAMATVHAQSDRLNEIAHLLKGDSQNLGDKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|218701187|ref|YP_002408816.1| alanyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218371173|emb|CAR19004.1| alanyl-tRNA synthetase [Escherichia coli IAI39]
          Length = 876

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/909 (44%), Positives = 570/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLATGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ + S E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKSEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAVLPA 862

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 863 ALASVKGWV 871


>gi|33592894|ref|NP_880538.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|41018186|sp|Q7VXE1|SYA_BORPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33572542|emb|CAE42122.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I]
          Length = 874

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/906 (44%), Positives = 552/906 (60%), Gaps = 53/906 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+  T+ 
Sbjct: 4   SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+A V
Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI A+ + TG+K   +N +  +VI DH+R+ +FLI DGI+P+NEG
Sbjct: 244 LQHVHSNYEIDLFQKLIAAAARETGVKDLADNSL--KVIADHIRACAFLIVDGIIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG T+     L+P L  EMG AYPEL Q    + + LR E+E
Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKSFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI C      +D+ 
Sbjct: 362 RFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADI-CREREVEVDMA 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++ QR +ARA           K+   L  +   T+F GY+ L  S          
Sbjct: 421 GFEAAMQRQREQARAAG-------KFKMAEGLSYEGAETRFEGYENLELS---------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                     GV   V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG    
Sbjct: 464 ----------GVK--VTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL+H A
Sbjct: 512 GGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++M  
Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAY 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  +VSE  +
Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVRRTGDIGLFKVVSEGGV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L  +L  
Sbjct: 686 AAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIAQVQEQLKALEKELEQ 745

Query: 775 AKRKLQLNV-EDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A+ KL  +   DL   +  ++  +  ++  I +VD K L+ ++D L+ +++  +++L   
Sbjct: 746 ARTKLAASAGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAG 805

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S + K S++  VT DL  R  A DL    A  + GG GGGRP MA  GG +      A+A
Sbjct: 806 SADGKISLVGGVTADLTGRIKAGDLVGFVAGQV-GGKGGGRPDMAMGGGTDLAALPAAVA 864

Query: 891 GVASFL 896
            V  ++
Sbjct: 865 SVQKWV 870


>gi|304399190|ref|ZP_07381057.1| alanyl-tRNA synthetase [Pantoea sp. aB]
 gi|304353244|gb|EFM17624.1| alanyl-tRNA synthetase [Pantoea sp. aB]
          Length = 875

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/912 (46%), Positives = 565/912 (61%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GHE++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFSL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKERLWVTVYETDDEAFDIWANEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+IDLF+ LIQA  QVTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ISAVLQHVNSNYEIDLFQKLIQAVAQVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEELQRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           SE+++F +TL+RGL LLD  L  L  D  L+G++ F+LYDT G P D+  D+   R L  
Sbjct: 362 SEEDQFARTLERGLALLDEELEKLQGD-TLDGEIVFRLYDTFGFPADLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+E+QR RAR  S G G+  +  I         A+ F GYD L         
Sbjct: 420 IDEAGFEQAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYDQL--------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     DL    ++ VKA+   GE V+E  +GQ   VV D+TPFY E+GGQ+GDTG
Sbjct: 465 ----------DL----AATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATHL
Sbjct: 511 LLKGKNAEFSVQDTQKYGQAIG-HVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T 
Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVETE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ + A + GA AL G KY+ RVRV+++     G  S  LCGGTH + TG+I L  I +
Sbjct: 630 VMDLDAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768
           ES   AGIRRIEAITG+ A + +  Q  +L+ LA  +K +  N    V G V+ +    +
Sbjct: 685 ESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDHVRALEK 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +   LS + I DV  +  ++SE   V+ K L++++D L+ ++ S II
Sbjct: 745 ELQQLRDQQAAQESAS-LSSNAI-DVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ E K S++  VT+DL  R  A +L A L+ +V  GG GGGRP MAQ+GG +   
Sbjct: 803 VLATVA-EGKVSLIAGVTKDLTGRVKAGELIAGLAQQV--GGKGGGRPDMAQAGGTDAKG 859

Query: 885 ADQAIAGVASFL 896
              A+AGV S++
Sbjct: 860 LKGALAGVESWV 871


>gi|168230882|ref|ZP_02655940.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471872|ref|ZP_03077856.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458236|gb|EDX47075.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205334599|gb|EDZ21363.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 876

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|30064057|ref|NP_838228.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56480163|ref|NP_708505.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|110806677|ref|YP_690197.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|44888327|sp|Q7UBU3|SYA_SHIFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123146773|sp|Q0T1C3|SYA_SHIF8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30042313|gb|AAP18038.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56383714|gb|AAN44212.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|110616225|gb|ABF04892.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|281602067|gb|ADA75051.1| Alanyl-tRNA synthetase [Shigella flexneri 2002017]
          Length = 876

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   ID   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADIDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMNLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|58698333|ref|ZP_00373249.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630565|ref|YP_002727356.1| alanyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|58535157|gb|EAL59240.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592546|gb|ACN95565.1| alanyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 880

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/898 (44%), Positives = 560/898 (62%), Gaps = 54/898 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +   +
Sbjct: 3   LNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD+ 
Sbjct: 63  SQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKN 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G   
Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHG--- 179

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                 + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   +N
Sbjct: 180 ----SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVHDN 235

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVLRR
Sbjct: 236 YDIDLFSALISKSQEYCG---RTENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDERF 358
           ++RRA  Y  LLGY + L+  + P L        MG  YPELI+AK LIE TL+SE+E F
Sbjct: 293 LIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSAYMGDIYPELIRAKSLIETTLKSEEENF 352

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  DIL  + +   D   F
Sbjct: 353 KDTLMKGISLLEKFTADLKSGDTLPGESAFKLYDTYGFPLDITLDILKEKKI-NFDQKGF 411

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + A+ EQ+ RARA   G G  + E++WF L +K+G T+F+GY+    +     D K+L  
Sbjct: 412 DDAMGEQKERARAKWAGSGEKSVEQVWFDLIDKFGKTKFVGYEFNEVN-----DAKILA- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                           +  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I   
Sbjct: 466 ---------------IVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH  L 
Sbjct: 511 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFVLR 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +   
Sbjct: 571 KILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLFLVEDMVNSLIRENLSTSTKIQSMNQ 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS+  
Sbjct: 631 AIDEGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAF 684

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKR 777
           G+RRIEA+TGQ A +++   +  LK +A F+K     ++ R+  + +E ++ +  I    
Sbjct: 685 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEIINRLNILNQERKESEAKIKNLY 744

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           K  ++ E +   +I  +NF+SH  + + +  ++  +  LQ++    II      K+K  +
Sbjct: 745 KKLISAESIKSTEINGINFVSHAFTNIPANIIREFV--LQQQKPKTIIAFTATEKDK--T 800

Query: 838 VLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           VLI+ V++DL ++ +A +L  ++ +       GG   +AQ+ G + NK D AI  + S
Sbjct: 801 VLIIKVSKDLANKISAKELVSIAVE----KNCGGNAELAQT-GCDSNKIDDAITAICS 853


>gi|170765841|ref|ZP_02900652.1| alanyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170124987|gb|EDS93918.1| alanyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 876

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + + L+E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQALVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +S  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LSGKVTALFVDGKAVDVINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L    ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLNVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLGEIAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|324111325|gb|EGC05307.1| alanyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 876

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +S  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LSGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|198245112|ref|YP_002216798.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205353771|ref|YP_002227572.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858091|ref|YP_002244742.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|197939628|gb|ACH76961.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205273552|emb|CAR38539.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206709894|emb|CAR34247.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326624557|gb|EGE30902.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628879|gb|EGE35222.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 876

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 567/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q +     LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAEGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|168235854|ref|ZP_02660912.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737652|ref|YP_002115779.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713154|gb|ACF92375.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290777|gb|EDY30131.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 876

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELASIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|161615724|ref|YP_001589688.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205830199|sp|A9N0C1|SYA_SALPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161365088|gb|ABX68856.1| hypothetical protein SPAB_03515 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 876

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFSVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|168262064|ref|ZP_02684037.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|200387922|ref|ZP_03214534.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605020|gb|EDZ03565.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205349249|gb|EDZ35880.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|322614354|gb|EFY11285.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322621581|gb|EFY18434.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624442|gb|EFY21275.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628773|gb|EFY25556.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633500|gb|EFY30242.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635924|gb|EFY32632.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639632|gb|EFY36317.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646815|gb|EFY43318.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650583|gb|EFY46988.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654805|gb|EFY51124.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659025|gb|EFY55278.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664408|gb|EFY60602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668343|gb|EFY64500.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673677|gb|EFY69778.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322681432|gb|EFY77464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322683834|gb|EFY79844.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193777|gb|EFZ78980.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200247|gb|EFZ85329.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203250|gb|EFZ88279.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205503|gb|EFZ90468.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212791|gb|EFZ97602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216317|gb|EGA01044.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221065|gb|EGA05496.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226886|gb|EGA11068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230830|gb|EGA14948.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234819|gb|EGA18905.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238858|gb|EGA22908.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241558|gb|EGA25589.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248295|gb|EGA32231.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251121|gb|EGA34994.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255840|gb|EGA39588.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263139|gb|EGA46677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264356|gb|EGA47862.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271183|gb|EGA54611.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 876

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|56414779|ref|YP_151854.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363707|ref|YP_002143344.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|59798481|sp|Q5PF17|SYA_SALPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56129036|gb|AAV78542.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095184|emb|CAR60735.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 876

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+E +++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDETYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D + F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEVGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLVSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|16766133|ref|NP_461748.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|168245264|ref|ZP_02670196.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168464053|ref|ZP_02697970.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194443356|ref|YP_002042068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450006|ref|YP_002046787.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197264802|ref|ZP_03164876.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|20532254|sp|Q8ZMK6|SYA_SALTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16421372|gb|AAL21707.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194402019|gb|ACF62241.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408310|gb|ACF68529.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195633250|gb|EDX51664.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197243057|gb|EDY25677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205335995|gb|EDZ22759.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247963|emb|CBG25796.1| AlaRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994942|gb|ACY89827.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159387|emb|CBW18905.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913845|dbj|BAJ37819.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223380|gb|EFX48446.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323131178|gb|ADX18608.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 876

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|238909593|ref|ZP_04653430.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 876

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|62181330|ref|YP_217747.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75481392|sp|Q57KU6|SYA_SALCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|62128963|gb|AAX66666.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715813|gb|EFZ07384.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 876

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|16761603|ref|NP_457220.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143087|ref|NP_806429.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213052376|ref|ZP_03345254.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213426121|ref|ZP_03358871.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213579902|ref|ZP_03361728.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213622611|ref|ZP_03375394.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|213852307|ref|ZP_03381839.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|289824467|ref|ZP_06544043.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|20532252|sp|Q8Z4D5|SYA_SALTI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25293091|pir||AF0843 alanine-tRNA ligase (EC 6.1.1.7) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503904|emb|CAD05933.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138720|gb|AAO70289.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 876

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|110642817|ref|YP_670547.1| alanyl-tRNA synthetase [Escherichia coli 536]
 gi|123147797|sp|Q0TEI3|SYA_ECOL5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110344409|gb|ABG70646.1| alanyl-tRNA synthetase [Escherichia coli 536]
          Length = 876

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    E+L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|168820492|ref|ZP_02832492.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342835|gb|EDZ29599.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320087230|emb|CBY96995.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 876

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|91212055|ref|YP_542041.1| alanyl-tRNA synthetase [Escherichia coli UTI89]
 gi|117624928|ref|YP_853916.1| alanyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218559685|ref|YP_002392598.1| alanyl-tRNA synthetase [Escherichia coli S88]
 gi|237706683|ref|ZP_04537164.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|122422735|sp|Q1R804|SYA_ECOUT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830084|sp|A1AEN7|SYA_ECOK1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91073629|gb|ABE08510.1| alanyl-tRNA synthetase [Escherichia coli UTI89]
 gi|115514052|gb|ABJ02127.1| alanyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218366454|emb|CAR04206.1| alanyl-tRNA synthetase [Escherichia coli S88]
 gi|226899723|gb|EEH85982.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|294489971|gb|ADE88727.1| penicillin-binding protein 7 [Escherichia coli IHE3034]
 gi|307625735|gb|ADN70039.1| alanyl-tRNA synthetase [Escherichia coli UM146]
 gi|323951085|gb|EGB46961.1| alanyl-tRNA synthetase [Escherichia coli H252]
 gi|323957093|gb|EGB52818.1| alanyl-tRNA synthetase [Escherichia coli H263]
          Length = 876

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 564/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNESRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|167550339|ref|ZP_02344096.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324713|gb|EDZ12552.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 876

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKLSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|283835574|ref|ZP_06355315.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291068784|gb|EFE06893.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 875

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI++  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRSLIESVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVVP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVEVMGSAGDELKRQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GY+ L         
Sbjct: 420 VDEEGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYEHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFAFAVSDTQKYGQAIG-HIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H++ +  AE++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKVLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  IVS
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A   +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIHTVHAQSDRLNDIAQLLKGDSQNIGDKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|204928130|ref|ZP_03219330.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204322452|gb|EDZ07649.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 876

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV D+TPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDRTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|170019057|ref|YP_001724011.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|205830085|sp|B1IUY2|SYA_ECOLC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169753985|gb|ACA76684.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739]
          Length = 876

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           ANE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 ANENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|218547790|ref|YP_002381581.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|218355331|emb|CAQ87938.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
          Length = 876

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRKVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|331678669|ref|ZP_08379343.1| alanine--tRNA ligase [Escherichia coli H591]
 gi|331073499|gb|EGI44820.1| alanine--tRNA ligase [Escherichia coli H591]
          Length = 876

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQERANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|237729651|ref|ZP_04560132.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226908257|gb|EEH94175.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 875

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/894 (44%), Positives = 567/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI++  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRSLIESVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVVP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + ++++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVDVMGSAGEELKRQQVMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GY+ L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYEHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFAFAVSDTQKYGQAIG-HIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H++ +  AE++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKLLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  IVS
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A   +  + ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIQTVHAESDRLSDVAQLLKGDSQNIGDKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|157162143|ref|YP_001459461.1| alanyl-tRNA synthetase [Escherichia coli HS]
 gi|218690819|ref|YP_002399031.1| alanyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227888232|ref|ZP_04006037.1| alanyl-tRNA synthetase [Escherichia coli 83972]
 gi|331658802|ref|ZP_08359744.1| alanine--tRNA ligase [Escherichia coli TA206]
 gi|205830083|sp|A8A3H4|SYA_ECOHS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157067823|gb|ABV07078.1| alanyl-tRNA synthetase [Escherichia coli HS]
 gi|218428383|emb|CAR09311.2| alanyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227834501|gb|EEJ44967.1| alanyl-tRNA synthetase [Escherichia coli 83972]
 gi|307554671|gb|ADN47446.1| alanyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|331053384|gb|EGI25413.1| alanine--tRNA ligase [Escherichia coli TA206]
          Length = 876

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|215488016|ref|YP_002330447.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|215266088|emb|CAS10508.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
          Length = 876

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|170682603|ref|YP_001744844.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|205830086|sp|B1LQ15|SYA_ECOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170520321|gb|ACB18499.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5]
          Length = 876

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLATGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|331648414|ref|ZP_08349502.1| alanine--tRNA ligase [Escherichia coli M605]
 gi|281179700|dbj|BAI56030.1| alanyl-tRNA synthetase [Escherichia coli SE15]
 gi|331042161|gb|EGI14303.1| alanine--tRNA ligase [Escherichia coli M605]
          Length = 876

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 564/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|74313262|ref|YP_311681.1| alanyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|157158305|ref|YP_001464004.1| alanyl-tRNA synthetase [Escherichia coli E24377A]
 gi|191167095|ref|ZP_03028916.1| alanyl-tRNA synthetase [Escherichia coli B7A]
 gi|193065058|ref|ZP_03046133.1| alanyl-tRNA synthetase [Escherichia coli E22]
 gi|193069650|ref|ZP_03050602.1| alanyl-tRNA synthetase [Escherichia coli E110019]
 gi|194427866|ref|ZP_03060412.1| alanyl-tRNA synthetase [Escherichia coli B171]
 gi|209920136|ref|YP_002294220.1| alanyl-tRNA synthetase [Escherichia coli SE11]
 gi|218555239|ref|YP_002388152.1| alanyl-tRNA synthetase [Escherichia coli IAI1]
 gi|218696288|ref|YP_002403955.1| alanyl-tRNA synthetase [Escherichia coli 55989]
 gi|256019527|ref|ZP_05433392.1| alanyl-tRNA synthetase [Shigella sp. D9]
 gi|260845339|ref|YP_003223117.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260856802|ref|YP_003230693.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260869370|ref|YP_003235772.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|293449010|ref|ZP_06663431.1| alanyl-tRNA synthetase [Escherichia coli B088]
 gi|307314418|ref|ZP_07594023.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|331669429|ref|ZP_08370275.1| alanine--tRNA ligase [Escherichia coli TA271]
 gi|123616373|sp|Q3YYG6|SYA_SHISS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830081|sp|A7ZQC5|SYA_ECO24 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|73856739|gb|AAZ89446.1| alanyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|157080335|gb|ABV20043.1| alanyl-tRNA synthetase [Escherichia coli E24377A]
 gi|190902877|gb|EDV62605.1| alanyl-tRNA synthetase [Escherichia coli B7A]
 gi|192927355|gb|EDV81974.1| alanyl-tRNA synthetase [Escherichia coli E22]
 gi|192957013|gb|EDV87464.1| alanyl-tRNA synthetase [Escherichia coli E110019]
 gi|194414099|gb|EDX30375.1| alanyl-tRNA synthetase [Escherichia coli B171]
 gi|209913395|dbj|BAG78469.1| alanyl-tRNA synthase [Escherichia coli SE11]
 gi|218353020|emb|CAU98845.1| alanyl-tRNA synthetase [Escherichia coli 55989]
 gi|218362007|emb|CAQ99613.1| alanyl-tRNA synthetase [Escherichia coli IAI1]
 gi|257755451|dbj|BAI26953.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257760486|dbj|BAI31983.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257765726|dbj|BAI37221.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|291322100|gb|EFE61529.1| alanyl-tRNA synthetase [Escherichia coli B088]
 gi|306905986|gb|EFN36507.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|315061973|gb|ADT76300.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|323180115|gb|EFZ65667.1| alanyl-tRNA synthetase [Escherichia coli 1180]
 gi|323377445|gb|ADX49713.1| alanyl-tRNA synthetase [Escherichia coli KO11]
 gi|323946425|gb|EGB42453.1| alanyl-tRNA synthetase [Escherichia coli H120]
 gi|324119946|gb|EGC13824.1| alanyl-tRNA synthetase [Escherichia coli E1167]
 gi|331063097|gb|EGI35010.1| alanine--tRNA ligase [Escherichia coli TA271]
 gi|332103001|gb|EGJ06347.1| alanyl-tRNA synthetase [Shigella sp. D9]
          Length = 876

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|322677738|gb|EFY73801.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
          Length = 876

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRF+ +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFNFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|306812426|ref|ZP_07446624.1| alanyl-tRNA synthetase [Escherichia coli NC101]
 gi|305854464|gb|EFM54902.1| alanyl-tRNA synthetase [Escherichia coli NC101]
 gi|320194836|gb|EFW69465.1| Alanyl-tRNA synthetase [Escherichia coli WV_060327]
          Length = 876

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|15832808|ref|NP_311581.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168749982|ref|ZP_02775004.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168755438|ref|ZP_02780445.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168762908|ref|ZP_02787915.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168768784|ref|ZP_02793791.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168774775|ref|ZP_02799782.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168778675|ref|ZP_02803682.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168800226|ref|ZP_02825233.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|194433071|ref|ZP_03065354.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|195938445|ref|ZP_03083827.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208805868|ref|ZP_03248205.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208813761|ref|ZP_03255090.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208818286|ref|ZP_03258606.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398791|ref|YP_002272160.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217327497|ref|ZP_03443580.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254794638|ref|YP_003079475.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|291284024|ref|YP_003500842.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|20532246|sp|Q8X3W8|SYA_ECO57 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13363025|dbj|BAB36977.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187769613|gb|EDU33457.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188015823|gb|EDU53945.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189003197|gb|EDU72183.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189357241|gb|EDU75660.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189362083|gb|EDU80502.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189366853|gb|EDU85269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189377449|gb|EDU95865.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|194418798|gb|EDX34884.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|208725669|gb|EDZ75270.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208735038|gb|EDZ83725.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208738409|gb|EDZ86091.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209160191|gb|ACI37624.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217319864|gb|EEC28289.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254594038|gb|ACT73399.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290763897|gb|ADD57858.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320640339|gb|EFX09878.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320645886|gb|EFX14867.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320651186|gb|EFX19621.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320656736|gb|EFX24624.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662279|gb|EFX29676.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667330|gb|EFX34288.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
          Length = 876

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|293415946|ref|ZP_06658586.1| alanyl-tRNA synthetase [Escherichia coli B185]
 gi|331684309|ref|ZP_08384901.1| alanine--tRNA ligase [Escherichia coli H299]
 gi|291432135|gb|EFF05117.1| alanyl-tRNA synthetase [Escherichia coli B185]
 gi|331077924|gb|EGI49130.1| alanine--tRNA ligase [Escherichia coli H299]
          Length = 876

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|323966841|gb|EGB62270.1| alanyl-tRNA synthetase [Escherichia coli M863]
          Length = 876

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGVNFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|293412052|ref|ZP_06654775.1| alanyl-tRNA synthetase [Escherichia coli B354]
 gi|291468823|gb|EFF11314.1| alanyl-tRNA synthetase [Escherichia coli B354]
          Length = 876

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|331654174|ref|ZP_08355174.1| alanine--tRNA ligase [Escherichia coli M718]
 gi|331047556|gb|EGI19633.1| alanine--tRNA ligase [Escherichia coli M718]
          Length = 876

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVTQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|323935749|gb|EGB32063.1| alanyl-tRNA synthetase [Escherichia coli E1520]
          Length = 876

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYSSDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|218706191|ref|YP_002413710.1| alanyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293406188|ref|ZP_06650114.1| alaS [Escherichia coli FVEC1412]
 gi|298381926|ref|ZP_06991523.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|331664248|ref|ZP_08365154.1| alanine--tRNA ligase [Escherichia coli TA143]
 gi|218433288|emb|CAR14188.1| alanyl-tRNA synthetase [Escherichia coli UMN026]
 gi|284922633|emb|CBG35721.1| alanyl-tRNA synthetase [Escherichia coli 042]
 gi|291426194|gb|EFE99226.1| alaS [Escherichia coli FVEC1412]
 gi|298277066|gb|EFI18582.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|331058179|gb|EGI30160.1| alanine--tRNA ligase [Escherichia coli TA143]
          Length = 876

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGTNFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|16130604|ref|NP_417177.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|89109484|ref|AP_003264.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170082274|ref|YP_001731594.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188492036|ref|ZP_02999306.1| alanyl-tRNA synthetase [Escherichia coli 53638]
 gi|194439000|ref|ZP_03071084.1| alanyl-tRNA synthetase [Escherichia coli 101-1]
 gi|238901834|ref|YP_002927630.1| alanyl-tRNA synthetase [Escherichia coli BW2952]
 gi|254037736|ref|ZP_04871794.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43]
 gi|256024797|ref|ZP_05438662.1| alanyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|307139383|ref|ZP_07498739.1| alanyl-tRNA synthetase [Escherichia coli H736]
 gi|331643380|ref|ZP_08344511.1| alanine--tRNA ligase [Escherichia coli H736]
 gi|2507425|sp|P00957|SYA_ECOLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830082|sp|B1XCM5|SYA_ECODH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1789048|gb|AAC75739.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|1800083|dbj|BAA16559.1| alanyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169890109|gb|ACB03816.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188487235|gb|EDU62338.1| alanyl-tRNA synthetase [Escherichia coli 53638]
 gi|194422121|gb|EDX38124.1| alanyl-tRNA synthetase [Escherichia coli 101-1]
 gi|226839360|gb|EEH71381.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43]
 gi|238859951|gb|ACR61949.1| alanyl-tRNA synthetase [Escherichia coli BW2952]
 gi|260448253|gb|ACX38675.1| alanyl-tRNA synthetase [Escherichia coli DH1]
 gi|309703056|emb|CBJ02388.1| alanyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|315137304|dbj|BAJ44463.1| alanyl-tRNA synthetase [Escherichia coli DH1]
 gi|323941473|gb|EGB37656.1| alanyl-tRNA synthetase [Escherichia coli E482]
 gi|323960644|gb|EGB56270.1| alanyl-tRNA synthetase [Escherichia coli H489]
 gi|323971514|gb|EGB66748.1| alanyl-tRNA synthetase [Escherichia coli TA007]
 gi|331036851|gb|EGI09075.1| alanine--tRNA ligase [Escherichia coli H736]
          Length = 876

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|187734262|ref|YP_001881554.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|205830210|sp|B2U049|SYA_SHIB3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187431254|gb|ACD10528.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 876

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|331674208|ref|ZP_08374968.1| alanine--tRNA ligase [Escherichia coli TA280]
 gi|222034390|emb|CAP77132.1| alanyl-tRNA synthetase [Escherichia coli LF82]
 gi|312947225|gb|ADR28052.1| alanyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|331068302|gb|EGI39697.1| alanine--tRNA ligase [Escherichia coli TA280]
          Length = 876

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|82778066|ref|YP_404415.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|123561812|sp|Q32CN1|SYA_SHIDS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81242214|gb|ABB62924.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 876

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|327394965|dbj|BAK12387.1| alanyl-tRNA synthetase AlaS [Pantoea ananatis AJ13355]
          Length = 875

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/912 (45%), Positives = 565/912 (61%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   T
Sbjct: 4   STAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFKL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF+ LI+A  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFQTLIEAVAKVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E  L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           SE+E+F KTL+RGL LLD  L+ L  D  L+G+  F+LYDT G P D+  D+   R L  
Sbjct: 362 SEEEQFAKTLERGLALLDEELAKLQSD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E+QR RAR  S G G+  +  I         A+ F GY+ L         
Sbjct: 420 IDEAGFEKAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYEQL--------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     DLT    + VKA+   GE V+   +GQ   +V D+TPFY E+GGQ+GDTG
Sbjct: 465 ----------DLT----ATVKALFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATHL
Sbjct: 511 ELKGNNALFSVQDTQKYGQAIG-HIGKLSSGQLRVGDRLEAVVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV TR
Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVETR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY+ +VRV+++     G  S  LCGGTH + TG+I L  I +
Sbjct: 630 VMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768
           ES   AGIRRIEAITG+ A + +  Q  +L+ +A  +K +  N    V G V+ +    +
Sbjct: 685 ESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLEK 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
           +LQ +  ++  Q + + L  H + DV  +  +++E+   D K L++++D L+ ++ S II
Sbjct: 745 ELQQLRDQQAAQESAQ-LGNHAV-DVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K S++  VT+DL DR  A +L A L+ KV  GG GGGRP MAQ+GG +   
Sbjct: 803 VLATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV--GGKGGGRPDMAQAGGSDATA 859

Query: 885 ADQAIAGVASFL 896
              A+AGV  ++
Sbjct: 860 LKGALAGVEGWV 871


>gi|330908728|gb|EGH37242.1| alanyl-tRNA synthetase [Escherichia coli AA86]
          Length = 876

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|224584605|ref|YP_002638403.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469132|gb|ACN46962.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 876

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 565/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    +   QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDATQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|323978695|gb|EGB73777.1| alanyl-tRNA synthetase [Escherichia coli TW10509]
          Length = 876

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGVNFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++S+   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|168787948|ref|ZP_02812955.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|261225988|ref|ZP_05940269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256754|ref|ZP_05949287.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|189372228|gb|EDU90644.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
          Length = 876

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED +N  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLMNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|197249925|ref|YP_002147723.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213628|gb|ACH51025.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 876

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 565/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERKIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   + Q+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAEQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|15803211|ref|NP_289243.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|12517136|gb|AAG57801.1|AE005498_2 alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
          Length = 878

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/892 (45%), Positives = 562/892 (63%), Gaps = 56/892 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGG 854


>gi|253772448|ref|YP_003035279.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162628|ref|YP_003045736.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|242378254|emb|CAQ33029.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253323492|gb|ACT28094.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974529|gb|ACT40200.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253978696|gb|ACT44366.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)]
          Length = 876

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++S+   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|320173452|gb|EFW48651.1| Alanyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 876

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K   +  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVEIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|332173020|gb|AEE22274.1| alanyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 865

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/906 (43%), Positives = 574/906 (63%), Gaps = 56/906 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL FF   GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y   T
Sbjct: 4   STAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW  LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIAYAWTFLTQELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +T+Y ED+EAF +W    G+  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 124 EKLLVTIYSEDDEAFDIWHNEIGVPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG+ EE G+R+IEIWNLVFMQF +Q   +   LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ID+F++LI+A+ ++ G     +  +  RV+ DH+RS SFLI+DG++P+NEGRGYVL
Sbjct: 244 SNYEIDIFQNLIKATAEIVGTSSLEDKSL--RVVADHIRSCSFLISDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG        L+ AL TEMG AYPEL + + +IE+ LR E+E+F +T
Sbjct: 302 RRIIRRAVRHGNKLGAKGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSRT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG+++L+  LS L + +++ G++ FKLYDT+G P D+  D+   +GL+ ID   F QA
Sbjct: 362 LERGMLILNDALSEL-EGKVVPGELVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQR RA+  S        E++   L+     + F+GY+L + +  +KE          
Sbjct: 420 MAEQRKRAQKAS-NFDLDYNEQLRSDLE-----SVFVGYELEQNTAQIKE---------- 463

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                        I  QG+ V E  +G +  ++ D++PFYAEAGGQ GDTG  + D    
Sbjct: 464 -------------IFVQGQSVAEIAAGMEGTIILDESPFYAEAGGQAGDTGTLVKDSGGF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEM----SLVLTIDYQNRRQLSINHSATHLLHHAL 597
           ++ D  K      +  AI  +G   +E+    S+   ++   R  + +NHSATHL+H AL
Sbjct: 511 EVQDTVK------LGKAIAHKGAALSELKVGDSVQANVNGARRHAIKLNHSATHLMHAAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            ++LG HV+Q GS + P+ LRFD +H + +T  ++ ++E  VN+ I  N  + T++M  E
Sbjct: 565 KSVLGEHVNQKGSLVQPERLRFDFSHYEAMTKEQVLAVETMVNEQILANHALQTKLMGLE 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A  +GA AL G KY+D VRVVS+     G  S  LCGGTHV+ TG+I L  I+SES I 
Sbjct: 625 QAKEAGAMALFGEKYDDDVRVVSM-----GDFSMELCGGTHVARTGDIGLFKIISESGIA 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG  A  ++  Q  +L S+++ LK     V  RV ++ E+ + L+    K 
Sbjct: 680 SGVRRIEAVTGITALQYVQQQAFELTSISAVLKTDVTTVGERVLQLIEQTKTLEKEVTKL 739

Query: 778 KLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++      DL    ++I  V  +S+ +  ++S  L++++D L+ +I SG+I+L G++ 
Sbjct: 740 KQEIANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GVAT 798

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +K S++  VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG      D AIA V
Sbjct: 799 GEKVSLIAGVTKDLTQKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDSAIASV 857

Query: 893 ASFLKK 898
             +L++
Sbjct: 858 NEWLQE 863


>gi|82545227|ref|YP_409174.1| alanyl-tRNA synthetase [Shigella boydii Sb227]
 gi|123558824|sp|Q31X62|SYA_SHIBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81246638|gb|ABB67346.1| alanyl-tRNA synthetase [Shigella boydii Sb227]
 gi|320186483|gb|EFW61211.1| Alanyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332091817|gb|EGI96895.1| alanyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 876

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKDANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|291618585|ref|YP_003521327.1| AlaS [Pantoea ananatis LMG 20103]
 gi|291153615|gb|ADD78199.1| AlaS [Pantoea ananatis LMG 20103]
          Length = 875

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/912 (45%), Positives = 563/912 (61%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   T
Sbjct: 4   STAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFKL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF+ LI+A  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFQTLIEAVAKVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E  L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           SE+E+F KTL+RGL LLD  L+ L  D  L+G+  F+LYDT G P D+  D+   R L  
Sbjct: 362 SEEEQFAKTLERGLALLDEELAKLQGD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E+QR RAR  S G G+  +  I         A+ F GY+ L         
Sbjct: 420 IDEAGFEKAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYEQL--------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     DLT    + VK +   GE V+   +GQ   +V D+TPFY E+GGQ+GDTG
Sbjct: 465 ----------DLT----ATVKGLFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATHL
Sbjct: 511 ELKGNNALFSVQDTQKYGQAIG-HIGKLSSGQLRVGDCLEAVVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV TR
Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVETR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY+ +VRV+++     G  S  LCGGTH + TG+I L  I +
Sbjct: 630 VMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768
           ES   AGIRRIEAITG+ A + +  Q  +L+ +A  +K +  N    V G V+ +    +
Sbjct: 685 ESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLEK 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
           +LQ +  +   Q + + L  H + DV  +  +++E+   D K L++++D L+ ++ S II
Sbjct: 745 ELQQLRDQHAAQESAQ-LGNHAV-DVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K S++  VT+DL DR  A +L A L+ KV  GG GGGRP MAQ+GG +   
Sbjct: 803 VLATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV--GGKGGGRPDMAQAGGSDATA 859

Query: 885 ADQAIAGVASFL 896
              A+AGV  ++
Sbjct: 860 LKGALAGVEGWV 871


>gi|163856313|ref|YP_001630611.1| alanyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|205829993|sp|A9IK31|SYA_BORPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163260041|emb|CAP42342.1| alaS2 [Bordetella petrii]
          Length = 873

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/908 (43%), Positives = 553/908 (60%), Gaps = 54/908 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ  GH ++PS+SL+P NDPTL+FTNSGMV FK++FTG+E   Y   T+ 
Sbjct: 4   SEIRQKFLQFFQSKGHTIVPSASLVPGNDPTLLFTNSGMVQFKDVFTGKETRSYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L   +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED++A+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDQAYDIWATEVGVPRERIIRIGDNKGSRYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS EE G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER+A V
Sbjct: 184 DHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           LQ   +NY+IDLF++LI+A+ + TG+   E N++   +VI DH+R+ +FLI DG++P+NE
Sbjct: 244 LQGVHSNYEIDLFQNLIRAAARETGVTNLEDNSL---KVIADHIRACAFLIVDGVIPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL QA   + + L+ E+
Sbjct: 301 GRGYVLRRIVRRALRHGYKLGQTKPFFYKLVPDLVAEMGQAYPELTQAAERVAQVLKQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG+TL+ G+ +LDG L+ +     L+G   F LYDT+G P+D+  DI   R +  +D+
Sbjct: 361 ERFGETLEHGMKILDGALAGVPAGGQLDGTTLFTLYDTYGFPVDLTADICRERNVE-VDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A+  QR +ARA           K+   L  +   T+F GY+ L            
Sbjct: 420 AGFDAAMARQRDQARAAG-------KFKMAEGLSYEGADTRFEGYEKLE----------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                     +GV   V A+   G  VE   +GQ   VV D TPFYAE+GGQ+GDTG   
Sbjct: 462 ---------LDGVK--VAALYVDGTQVERVQAGQHAVVVLDATPFYAESGGQVGDTGLLE 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G R  + D  K   G+F HH ++E G L    +L+  +D   R +   NHSATHL+H 
Sbjct: 511 SGGARFAVADTLKIQAGVFGHHGVLESGSLAVGDTLLARVDAVRRARTVRNHSATHLMHK 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS + PD  RFD  H  P+++ ++  +E  VN  +  N P   R+M 
Sbjct: 571 ALRQVLGAHVQQRGSLVDPDKTRFDFAHDAPLSAEQIAQVEAIVNAEVLANQPTQARVMA 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            +DA+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IV+E  
Sbjct: 631 YDDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVAEGG 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773
           + AG+RR+EAITG  A + +  Q+  L   A  L+ +  ++  R+ ++ E+ R L+  L 
Sbjct: 685 VAAGVRRVEAITGDNALAWVQNQNALLLRAAGMLRTTPADLPERLAQVQEQLRTLEKDLE 744

Query: 774 HAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            A+ KL  +   DL+    ++  V  ++  + ++D K L+ ++D L+ +++S +++L   
Sbjct: 745 QARGKLAASAGNDLAAKAAEVKGVKVLAASLGDIDPKALRGMVDNLKDRLKSAVVLLASA 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K S++  VT DL  R  A DL    A  + GG GGGRP MA  GG +      A+A
Sbjct: 805 GGDGKISLVGGVTADLTGRVKAGDLVGFVAGQV-GGKGGGRPDMAMGGGNDAQALPAAVA 863

Query: 891 GVASFLKK 898
            V  ++ +
Sbjct: 864 SVQGWVDE 871


>gi|317049269|ref|YP_004116917.1| alanyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316950886|gb|ADU70361.1| alanyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 875

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/910 (45%), Positives = 557/910 (61%), Gaps = 58/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT E  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWELLTGEQWFKL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKDRLWVTVYETDDEAYDIWANDIGIPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF  LI++   VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFAKLIKSVADVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  +L + +  +E  L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIEVMGSAGEDLQRQQAQVENVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+RGL LLD  L+ L  D  L+G+  F+LYDT G P+D+  D+   R L  
Sbjct: 362 AEEEQFAKTLERGLALLDEELAKLQGD-TLDGETVFRLYDTFGFPVDLTADVCRERDLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E+QR RAR  S G G+     I         A+ F GYD L         
Sbjct: 420 IDEAGFEVAMEQQRQRAREAS-GFGADYNNVIRID-----SASAFKGYDQL--------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++S V+A+   G+ V+   +GQ   VV D+TPFY E+GGQ+GDTG
Sbjct: 465 --------------ALASTVQALFVDGQQVDHVSAGQDAVVVLDETPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     + D QK  + I  H   + +G LR    L   +D + R ++ +NHSATHL
Sbjct: 511 VLAGNNAEFSVQDTQKYGQAIG-HIGKLTQGQLRVGDRLNAQVDEERRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NL V T 
Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLAVETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+ RVRV+S+     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDQRVRVLSM-----GDFSTELCGGTHAARTGDIGLFRIQS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +  Q  +L  +A  +K +  N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALAQVNAQSHQLHDIAQLVKANSSNLNEKVRGLVDHVRALEK 744

Query: 773 -IHAKRKLQLNVEDLS-CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
            +   R  Q   E  S   K  DV     ++SE   V+ K L+++MD L+ ++ S II+L
Sbjct: 745 ELQQLRDQQAAQESASLSSKAIDVKGTKLLVSELSNVEPKMLRTMMDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ E K S++  VT+DL DR  A +L   L+A+V  GG GGGRP MAQ+GG N     
Sbjct: 805 ATVA-EGKVSLIAGVTKDLTDRVKAGELVGELAAQV--GGKGGGRPDMAQAGGTNPQALA 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 GALAGVQDWV 871


>gi|254489976|ref|ZP_05103171.1| alanyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224465061|gb|EEF81315.1| alanyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 858

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/893 (45%), Positives = 547/893 (61%), Gaps = 49/893 (5%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL+FF   GHE++ SS L+P NDPTL+FTN+GMV FK  F GQE   Y    T Q+CVRA
Sbjct: 2   FLDFFASKGHEVVASSPLVPANDPTLLFTNAGMVQFKETFLGQETRKYTRAVTTQRCVRA 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           GGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L   +L+ITV+
Sbjct: 62  GGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTETLALPPEKLWITVF 121

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
           +ED+EA  +W K  G+SAD+  RI   DNFWSM +TGPCGPCSEIF+D GE I GG PG+
Sbjct: 122 EEDDEAADIWLKEIGVSADRFSRIGAKDNFWSMGDTGPCGPCSEIFYDHGEDIAGGPPGT 181

Query: 191 SEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
            EE G+RYIEIWNLVFMQF++        LPK S+DTGMGLER+A VLQ   NNY+IDLF
Sbjct: 182 PEEDGDRYIEIWNLVFMQFDRSADGTLTPLPKPSVDTGMGLERLAAVLQHVHNNYEIDLF 241

Query: 250 KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           +HLI+A + ++G +   N   + RVI DH+RS SF+IADG+ P+NEGRGYVLRRI+RRA+
Sbjct: 242 QHLIEAIQALSGTEDSSN--FSLRVIADHIRSCSFMIADGVHPSNEGRGYVLRRIIRRAI 299

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            +   LG  E     L+  L  EMG A+PEL QA+ L+E+ L  E+ RF  TLD GL +L
Sbjct: 300 RHGHKLGLKEAFFHKLVQPLVNEMGDAFPELKQAQALVEKALLQEENRFADTLDNGLRIL 359

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           D  +  +G  EI  G+  F LYDT+G P+D+  DI   RGL  IDI  F +A+E QR+RA
Sbjct: 360 DQAIEDMGDKEI-PGETVFLLYDTYGFPIDLTADIARERGLT-IDIAGFERAMEAQRTRA 417

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R+ S   G G +E+I        G T F GY   +                        +
Sbjct: 418 RSASQFAG-GLSEQIAID-----GETAFCGYSQTQ-----------------------ET 448

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
             + AI+  GE V++  +GQ+  +V D TPFYAE+GGQ+GD G    D     ++D +K+
Sbjct: 449 GTITAIIADGEHVDQLEAGQEGVLVLDHTPFYAESGGQVGDHGEITSDNASFTVSDTRKQ 508

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +  F H    E G      S+   ID  NR+  ++NHSATHLLH AL  +LG HV Q G
Sbjct: 509 GKA-FTHIGRCEHGQFHVGQSVTAQIDESNRQATALNHSATHLLHAALRNVLGDHVMQKG 567

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S + P  LRFD +H +P+T  +L  IE  VN  I  N PV T++M  E+A  SGA AL G
Sbjct: 568 SLVDPQRLRFDFSHFEPVTPDQLHDIERMVNQQIRLNHPVDTKLMAIEEAKKSGAMALFG 627

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY+D VRV+S+     G  S  LCGGTHV  TG+I LL I +E+ I +G+RRIEA+TG 
Sbjct: 628 EKYDDEVRVLSM-----GDFSIELCGGTHVQHTGDIGLLKITAEAGIASGVRRIEAVTGD 682

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLS 787
           +A  ++      L  ++  LK    NV  +   + +  R+L  +L   K KL  +  D  
Sbjct: 683 KALDYIDTTQSTLNQVSDLLKAKPDNVQDKAALLVQRSRELEKELESLKAKLASSAGDDL 742

Query: 788 CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            + + ++N +  + S +   D K L+  +D L+ K+ +  I+L  + K++K +++  VT+
Sbjct: 743 ANSVQEINGIKVLASSLEGADGKALREAVDQLKNKLGTAAIVLTAV-KDEKITIIAGVTK 801

Query: 845 DLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           D+ D+  A DL   ++++V  GG GGGRP MAQ GG        A+A V  ++
Sbjct: 802 DITDKIRAGDLVGHVASQV--GGKGGGRPDMAQGGGNEPQNLAAALASVTDWV 852


>gi|329296669|ref|ZP_08254005.1| alanyl-tRNA synthetase [Plautia stali symbiont]
          Length = 875

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/908 (45%), Positives = 554/908 (61%), Gaps = 58/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GMV FK++F GQ+K  Y   TT 
Sbjct: 6   AEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMVQFKDVFLGQDKRDYSRATTS 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT E  F L +
Sbjct: 66  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYAWELLTGEQWFKLPK 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL++TVY+ D+EAF++W    G+  ++IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 126 ERLWVTVYETDDEAFEIWANDIGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPCTEI 185

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER+A
Sbjct: 186 FYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLERIA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY IDLF  LI A  QVTG     N  +  RVI DH+RS +FLIADG++P+N
Sbjct: 246 AVLQHVYSNYKIDLFAKLINAVAQVTGATDLNNKSL--RVIADHIRSCAFLIADGVIPSN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           E RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  +L + +  +E  L++E
Sbjct: 304 ENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEDLKRQQKHVENALKNE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL+RGL LLD  L+ L K + L+G+  F+LYDT G P D+  D+   R L  ID
Sbjct: 364 EEQFAKTLERGLALLDDELAKL-KGDTLDGETVFRLYDTFGFPADLTADVCRERNLK-ID 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E+QR RAR  S G G+     I F        TQF GYD L           
Sbjct: 422 EAGFEAAMEQQRQRAREAS-GFGTDYNTVIRFDT-----PTQFKGYDHL----------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        + + V+A+   G+ VE+  +GQ   V+ DQTPFY E+GGQ+GDTG  
Sbjct: 465 ------------SLEATVQALFVDGQQVEQVAAGQDAVVILDQTPFYGESGGQVGDTGVL 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G      + D QK  +  F H   + +G LR    L   +D   R ++ +NHSATHL+H
Sbjct: 513 TGQNAEFSVQDTQKYGKA-FGHIGKLRQGQLRVGDRLQAQVDEVRRSRIILNHSATHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS      LRFD +H + +   +++++ED VN  I +NLP+ T +M
Sbjct: 572 EALRKVLGDHVGQKGSLNNDKYLRFDFSHGEAMKPQQIRAVEDIVNAQIRRNLPITTNVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A A GA AL G KY+ RVRVVS+     G +S  LCGGTH + TG+I L  I  E+
Sbjct: 632 DLEEAKALGATALFGEKYDQRVRVVSM-----GEYSIELCGGTHAARTGDIGLFRIQGEA 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-I 773
              AGIRRIEA+TG+ A + L  Q ++L  +A  +K +   +  +V  + E  R L+  +
Sbjct: 687 GTAAGIRRIEAVTGEAAIAQLHAQSDQLTDIAQVVKANHSYLNEKVRGLVENVRALEKEL 746

Query: 774 HAKRKLQLNVEDLS-CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829
              R  Q   E  S   K  +V     ++SE   V+ K L++++D L+ ++ S +I+L  
Sbjct: 747 QQLRDQQAAQESASLSSKAVEVKGAKLLVSELSNVEPKMLRTMVDDLKNQLGSAVIVLAT 806

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           ++ E K S++  VT+DL DR  A +L   L+A+V  GG GGGRP +AQ+GG +      A
Sbjct: 807 VA-EGKVSLIAGVTKDLTDRVKAGELIGELAAQV--GGKGGGRPDLAQAGGTDAQALSGA 863

Query: 889 IAGVASFL 896
           +  V  ++
Sbjct: 864 LVSVPEWV 871


>gi|205830246|sp|A8GA09|SYA_SERP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 875

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/909 (44%), Positives = 568/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EAF +W++  G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF  LI A  +VTG     N  +  RVI DH+RS +FL++DG+ P
Sbjct: 244 IAAVLQHVNSNYEIDLFSKLIAAVAKVTGATDLDNKSL--RVIADHIRSCAFLVSDGVTP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + L+E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+++F +TL+RGL LLD  L++L  D  L+G+ AF+LYDT+G P+D+  D+   RGL  
Sbjct: 362 TEEDQFARTLERGLTLLDEELANLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + S+    GA+QF GYD         E 
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSMIRVDGASQFSGYD--------HEQ 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           ++               S V A+ + G+ V E  +G++  VV D+TPFY E+GGQ+GD G
Sbjct: 466 QQ---------------STVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    +++D QK  + I  H   +  G L+    +   ID   R ++ +NHSATHL
Sbjct: 511 VLKAANADFEVSDTQKYGQAIG-HQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++++ED VN  I +NLPV T 
Sbjct: 570 LHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 VMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG  A + L  Q++ L+ +A  +K    N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K   VN +  ++S++D   +K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 805 A-TTADDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALPA 862

Query: 888 AIAGVASFL 896
           A+  V +++
Sbjct: 863 ALDSVEAWV 871


>gi|119472239|ref|ZP_01614418.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119445057|gb|EAW26352.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 866

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/903 (44%), Positives = 559/903 (61%), Gaps = 56/903 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   T+
Sbjct: 6   TAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L Q 
Sbjct: 66  SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIKFAWEFLTEVVKLPQE 125

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L +T+Y +DEEAF+ W K  GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE I
Sbjct: 126 KLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEHI 185

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GG PGS EE G+R+IEIWNLVFMQ+ +QN      LPK S+DTGMGLER++ +LQ   +
Sbjct: 186 WGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERISAILQGVHS 245

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NY+IDLF+ LI A+  VT  +   +  +  RV+ DH+RS +FLI+DG++P+NEGRGYVLR
Sbjct: 246 NYEIDLFQGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGKTL
Sbjct: 304 RIIRRAVRHGNKLGAQGAFFFKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKTL 363

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RGL +L+  LS L K +++ GD+ FKLYDT+G P D+  D+   R +  ID   F + +
Sbjct: 364 ERGLAILEESLSDL-KGDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHKGFEECM 421

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             QR  A+  +   G+   E++     +K+  T F GYD                     
Sbjct: 422 AVQRKTAQ-QAGKFGADYNEQL---KSDKH--TDFKGYD--------------------- 454

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
             +   S+ V  +   GE V+    GQ+  V+ D+TPFYAE+GGQ GDTG     G    
Sbjct: 455 --STHYSATVVEVFAGGEAVQLLEDGQEGIVILDRTPFYAESGGQTGDTGTITVAGGEFN 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +T+  K     F HH  V+ G +     +  TID   R  +  NH+ATH+LH AL  +LG
Sbjct: 513 VTNTTKLGNA-FAHHGTVQ-GRIGVNDKVDATIDDARRENIKKNHTATHILHEALRQLLG 570

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HVSQ GS +  D LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA A 
Sbjct: 571 EHVSQKGSLVQADRLRFDFSHFEAVTKDELRDIERVVNDEIRRNFALNTELMAIDDAKAK 630

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+RR
Sbjct: 631 GAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVRR 685

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+    K+  QLN
Sbjct: 686 IEAVTGADAVAYVSEQEQQLSDVAALVKGDSASVLEKVTALLEKSKGLE----KQIAQLN 741

Query: 783 VEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +  S         I ++N +  +++ V   +SK L+ ++D L+ KI SG+I L G++  
Sbjct: 742 DKLASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASG 800

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S++  VT+DL  +  A +L    A  + GG GGGRP MAQ+GG        A+  V 
Sbjct: 801 DKVSLIAGVTKDLTGKVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPQNLAAALDSVT 859

Query: 894 SFL 896
           ++L
Sbjct: 860 AWL 862


>gi|183596274|ref|ZP_02958302.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827]
 gi|188023874|gb|EDU61914.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827]
          Length = 876

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/915 (44%), Positives = 572/915 (62%), Gaps = 67/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KE-FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT KE F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W K  G+  D+IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYDIWHKEVGIPVDRIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGI 290
           +A VLQ   +NYDID+F+ LI A+ + TG     N++ N   RVI DH+RS +FL++DG+
Sbjct: 244 IAAVLQHVNSNYDIDIFQELIAAAAKATG----SNDLSNKSLRVIADHIRSCAFLVSDGV 299

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E+ 
Sbjct: 300 IPSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLINVMGAAADELARQQSTVEKV 359

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LLD  L+ L K + L+G+  F+LYDT+G P+D+  D+   R +
Sbjct: 360 LKTEEEQFARTLERGLQLLDEELAAL-KGDTLDGETVFRLYDTYGFPMDLTADVCRERNI 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F +A+E+QR RAR  S   G GT    + SL +    ++F GY          
Sbjct: 419 K-VDEEGFERAMEDQRRRARESS---GFGTD---YNSLIKVEKHSEFSGY---------- 461

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          N   + + AI + G+ V+   +G++  V+ D+T FYAE+GGQ+GD
Sbjct: 462 -------------AYNEQLATITAIYKNGQPVDSLNAGEEGLVILDKTAFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D     +TD QK  + I  H   VE G L     +   ID + R  + +NHSAT
Sbjct: 509 TGLLRNDSGSFIVTDTQKYGQAIG-HIGKVESGSLVINHRIDAKIDVERRDAIRLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HVSQ GS +    LRFD +H + +T+A+L+ +ED VN  I +N P+ 
Sbjct: 568 HLLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTAAQLREVEDIVNAQIRKNTPIE 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A A GA AL G KY +RVRV+S+    GG  S  LCGGTH S TG+I L  I
Sbjct: 628 TELMDLESAKAKGAMALFGEKYEERVRVLSM----GGDFSIELCGGTHASRTGDIGLFRI 683

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SES   AG+RRIEA TG+ A   +  Q E+L ++A  LK    ++V +V+   E+ R+L
Sbjct: 684 LSESGTAAGVRRIEATTGESALESVHSQSEQLNAIAHLLKGDMSSLVEKVKSALEKSRQL 743

Query: 771 QLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQ 821
           +    K  LQL  +  S        K  D+  +  ++S++++ E   L++++D L+ +++
Sbjct: 744 E----KEILQLKDQQASQESASLSSKAKDIKGVKLLVSQLNNTEPKLLRTMVDDLKNQLK 799

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S II+L   S + K S+++ VT DL  +  A DL    A+ + GG GGGRP MAQ+GG +
Sbjct: 800 SAIIVLSTTSGD-KVSIIVGVTNDLTAKIKAGDLISYVAQQV-GGKGGGRPDMAQAGGTD 857

Query: 882 GNKADQAIAGVASFL 896
            +    A+A V  ++
Sbjct: 858 VSALPTAMASVEDWV 872


>gi|157369088|ref|YP_001477077.1| alanyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|157320852|gb|ABV39949.1| alanyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 892

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/909 (44%), Positives = 568/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 21  STAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 80

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 81  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFNL 140

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EAF +W++  G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 141 PKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 200

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLER
Sbjct: 201 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLER 260

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF  LI A  +VTG     N  +  RVI DH+RS +FL++DG+ P
Sbjct: 261 IAAVLQHVNSNYEIDLFSKLIAAVAKVTGATDLDNKSL--RVIADHIRSCAFLVSDGVTP 318

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + L+E+ L+
Sbjct: 319 SNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVLK 378

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+++F +TL+RGL LLD  L++L  D  L+G+ AF+LYDT+G P+D+  D+   RGL  
Sbjct: 379 TEEDQFARTLERGLTLLDEELANLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERGLK- 436

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + S+    GA+QF GYD         E 
Sbjct: 437 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSMIRVDGASQFSGYD--------HEQ 482

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           ++               S V A+ + G+ V E  +G++  VV D+TPFY E+GGQ+GD G
Sbjct: 483 QQ---------------STVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDKG 527

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    +++D QK  + I  H   +  G L+    +   ID   R ++ +NHSATHL
Sbjct: 528 VLKAANADFEVSDTQKYGQAIG-HQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATHL 586

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++++ED VN  I +NLPV T 
Sbjct: 587 LHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQTE 646

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 647 VMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILS 701

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG  A + L  Q++ L+ +A  +K    N+  +V  + +  R L+ 
Sbjct: 702 ESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALEK 761

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K   VN +  ++S++D   +K L++++D L+ ++ S II+L
Sbjct: 762 ELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIVL 821

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 822 A-TTADDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALPA 879

Query: 888 AIAGVASFL 896
           A+  V +++
Sbjct: 880 ALDSVEAWV 888


>gi|94309776|ref|YP_582986.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|93353628|gb|ABF07717.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 884

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/908 (43%), Positives = 550/908 (60%), Gaps = 55/908 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   T+
Sbjct: 13  VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRATS 72

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L   
Sbjct: 73  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAD 132

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW MA+TGPCGPCSEIF
Sbjct: 133 KLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 192

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 193 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERIAA 252

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF+ LI+ + + T +     N +  +VI DH+R+ SFLI DG++P NE
Sbjct: 253 VLQHVHSNYEIDLFQALIKGAGRETHIADLNQNSL--KVIADHIRACSFLIVDGVIPGNE 310

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL +A+  + E L++E+
Sbjct: 311 GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKAEE 370

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +LD  ++ L     ++L+G++AFKL+DT G PLD+ QD+   + +  +
Sbjct: 371 ERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT-V 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K+   L+     T F GYD L          
Sbjct: 430 DEAAFDAAMTRQREQARA-------AGKFKMAAGLEYSGEKTVFHGYDALS--------- 473

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +GV   V A+   G  V+    GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 474 -----------MDGVR--VTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQGT 520

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +       + D  K    +F H   +  G L+   ++   +D   R +   NHSATHL+
Sbjct: 521 LVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATHLM 580

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD +H+ P+T A+++ IE+ VN  I  N P V ++
Sbjct: 581 HKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVAQV 640

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV E
Sbjct: 641 MPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVTRTGDIGLFKIVVE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           + + AGIRR+EAITG  A  +L   D +L   A+ L+     +V R+ ++ ++ R L  +
Sbjct: 695 AGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALEKE 754

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +  DV  +  + +++D    K L+  MD L+ K+QS  I+L 
Sbjct: 755 LEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIVLA 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     +A
Sbjct: 815 AVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPKA 872

Query: 889 IAGVASFL 896
           +AGV  ++
Sbjct: 873 LAGVTEWV 880


>gi|205830252|sp|Q1LQ59|SYA_RALME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/908 (43%), Positives = 550/908 (60%), Gaps = 55/908 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   T+
Sbjct: 3   VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L   
Sbjct: 63  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW MA+TGPCGPCSEIF
Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF+ LI+ + + T +     N +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQALIKGAGRETHIADLNQNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL +A+  + E L++E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKAEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +LD  ++ L     ++L+G++AFKL+DT G PLD+ QD+   + +  +
Sbjct: 361 ERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K+   L+     T F GYD L          
Sbjct: 420 DEAAFDAAMTRQREQARA-------AGKFKMAAGLEYSGEKTVFHGYDALS--------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +GV   V A+   G  V+    GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 464 -----------MDGVR--VTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +       + D  K    +F H   +  G L+   ++   +D   R +   NHSATHL+
Sbjct: 511 LVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD +H+ P+T A+++ IE+ VN  I  N P V ++
Sbjct: 571 HKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVAQV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV E
Sbjct: 631 MPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVTRTGDIGLFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           + + AGIRR+EAITG  A  +L   D +L   A+ L+     +V R+ ++ ++ R L  +
Sbjct: 685 AGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +  DV  +  + +++D    K L+  MD L+ K+QS  I+L 
Sbjct: 745 LEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     +A
Sbjct: 805 AVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPKA 862

Query: 889 IAGVASFL 896
           +AGV  ++
Sbjct: 863 LAGVTEWV 870


>gi|156932779|ref|YP_001436696.1| alanyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|205830089|sp|A7MJ41|SYA_ENTS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156531033|gb|ABU75859.1| hypothetical protein ESA_00569 [Cronobacter sakazakii ATCC BAA-894]
          Length = 875

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/909 (44%), Positives = 571/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A   VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFQKLIKAVANVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGVAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD           
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHTE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ V A+   G+ VE+  +GQ+  VV D+TPFYAE+GGQ+GD G
Sbjct: 466 ---------------LTAKVTALFVDGKSVEQVTAGQQAVVVLDETPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G    + D QK  + I  H   +  G+L+    +   +D+  R ++ +NHSATHL
Sbjct: 511 ELKGNGFTFTVNDTQKYGQAIG-HIGELASGVLKVGEGVKAEVDHARRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +   GLRFD +H + +   E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY DRVRV+S+     G  S+ LCGG H S TG+I L  IVS
Sbjct: 630 VMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A S +  Q+++L  L+  LK     +  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQQAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELVGMIAQQV-GGKGGGRPDMAQAGGSDAAALPA 862

Query: 888 AIAGVASFL 896
           A+  V S++
Sbjct: 863 ALGSVESWV 871


>gi|292487293|ref|YP_003530165.1| alanyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292900336|ref|YP_003539705.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291200184|emb|CBJ47312.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291552712|emb|CBA19757.1| Alanyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 876

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/910 (45%), Positives = 560/910 (61%), Gaps = 58/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y    
Sbjct: 4   STAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYTRAA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F L
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAIAFAWELLTSSQWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF  LIQ+  QVTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIQSVAQVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ LR
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQSQVEQVLR 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+RGL LLD  L +L  D +L+G+  F+LYDT G P+D+  D+   R L  
Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQGD-MLDGETVFRLYDTFGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E+QR RAR  S G GS     I         A++F GY  L+        
Sbjct: 420 IDEAGFERAMEQQRQRARDAS-GFGSDYNNVIRIDQ-----ASEFKGYQQLQ-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ + AI   G+      +GQ+  +V D TPFYAE+GGQ+GDTG
Sbjct: 466 ---------------LNAAISAIFVDGQAANTISAGQEGVIVLDATPFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     +++ QK A+ I  H   +  G LR    +   +D   R ++ +NHSATHL
Sbjct: 511 KLQGNSASFIVSNTQKYAQAI-GHSGKLAIGELRVGDCVAAQVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS +    LRFD +  + +T  E++ +E+ VN  I +NLP+ T 
Sbjct: 570 LHAALRQVLGQHVSQKGSLVNDTYLRFDFSQFEAMTPQEMRQVEEIVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  I S
Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +  N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKANHSNLNEKVRALIDHARALEK 744

Query: 773 IHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++   LS   IA      +   +S+V+ K L++++D L+ ++ S II+L
Sbjct: 745 QLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ + K S++  VT+DL DR  A +L   L+ KV  GG GGGRP MAQ+GG +     
Sbjct: 805 ATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV--GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|146312813|ref|YP_001177887.1| alanyl-tRNA synthetase [Enterobacter sp. 638]
 gi|205830088|sp|A4WDQ6|SYA_ENT38 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145319689|gb|ABP61836.1| alanyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 875

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/909 (44%), Positives = 571/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG++EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGTAEEDGDRYIEIWNIVFMQFNRQIDGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF  LI++  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFSTLIKSVAEVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVGVMGDAGEELKRQQSQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSQLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFQGYDRLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ V A+   G+ V+   +GQ   VV D+TPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNAKVTALFVDGKAVDSISAGQDAVVVLDKTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G    ++D QK  + I  H   +  G L+    +   +D   R ++ +NHSATHL
Sbjct: 511 ELKGNGFSFAVSDTQKYGQAIG-HIGKLASGSLKVGEGVQAEVDEARRERIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALRDVLGTHVAQKGSLVNDKILRFDFSHFEAMKPSEIRAVEDMVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  + ++L  +A  LK    N+  +V    E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAESDQLHDIAQLLKGDSHNLGEKVRSALERSRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q  V++ +    K  D+  +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAVQESANLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 A-TAVDGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPA 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|127512149|ref|YP_001093346.1| alanyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|205830205|sp|A3QC89|SYA_SHELP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126637444|gb|ABO23087.1| alanyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 874

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/910 (43%), Positives = 570/910 (62%), Gaps = 56/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF++NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEFFRRNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRDYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY+ D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYETDDEAFEIWNKEIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q       LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGTMDPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+    N  +  RV+ DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQSLIKKTAEILGVTDLENKSL--RVVADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A  EL+  + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKELVATQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L   E L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDNALSQLEGKE-LDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G  +  +    +    T+F GY  L           
Sbjct: 420 EAGFEAAMAEQRSRAQA------AGQFDTDYNDSLKIDAETEFCGYSDL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      NG + ++   V  G+ V+    G +  VV D TPFY E+GGQ GD G  
Sbjct: 463 -----------NGEAKVIGLYV-DGQAVDALAEGDQGVVVLDSTPFYGESGGQCGDKGLL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G+  ++ D QK  + +  H  +V+ G +    +L   +D + R +  +NHS THLLH
Sbjct: 511 SAEGVEFEVKDTQKYGQAMG-HIGLVKAGSIAMGQTLNAAVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + +   ELK +ED VN  I +N  +   +M
Sbjct: 570 AALRQVLGTHVSQKGSLVEPERLRFDFSHFEAVKREELKQVEDLVNTQIRRNHELKAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIDQAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            I AGIRRIEA+TG  A +++  Q  +L+  AS LK    +VV +++   ++ ++L  +L
Sbjct: 685 GIAAGIRRIEAVTGAAAIAYVGEQQAQLEQAASLLKGDSASVVAKLKAQLDKTKQLEKEL 744

Query: 773 IHAKRKLQLNVE-DLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL+    ++A V  +  ++  V++  L+ + D L++K+QSGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQELAGVKVLVKLLEGVEAGALRGLQDELKQKLQSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I+ + K +++  VT+DL  +  A +L A ++A+V  GG GGGRP MAQ+GG    K   A
Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSEPEKLAGA 861

Query: 889 IAGVASFLKK 898
           +  V  +L +
Sbjct: 862 LDSVIPWLSE 871


>gi|205830248|sp|A9MFZ1|SYA_SALAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/894 (44%), Positives = 560/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+ +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYGIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A  +VTG     N  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLSNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERDIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFETAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVNGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    + D QK  + I  H   +  G L+    +   +D   R ++ +NHSATHL
Sbjct: 511 ELKGVGFTFAVNDTQKYGQAIG-HLGKLSAGALKVGDVVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGAHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETH 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH   TG+I L  I+S
Sbjct: 630 IMELEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHARRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERSRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKDQAAAQESASLSSKAVDLNGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+  R  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTGRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|109899322|ref|YP_662577.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|123360521|sp|Q15RG5|SYA_PSEA6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109701603|gb|ABG41523.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 865

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/902 (43%), Positives = 570/902 (63%), Gaps = 48/902 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL FF   GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y   T
Sbjct: 4   STAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI  AW  LT+   L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHQAIGYAWSFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W    G+  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 124 DKLLVTVYSEDDEAFDIWHNDIGIPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PGS EE G+R+IEIWNLVFMQF +Q   +   LPK SIDTGMGLER++ ++Q   
Sbjct: 184 IWGGPPGSPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAIIQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ID+F++LI+A+ ++ G+    +  +  RV+ DH+RS SFLI+DG++P+NEGRGYVL
Sbjct: 244 SNYEIDIFQNLIKATAKIVGVTSLEDKSL--RVVADHIRSCSFLISDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG        L+ AL TEMG AYPEL + + +IE+ LR E+E+F +T
Sbjct: 302 RRIIRRAVRHGNKLGANGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSRT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG+++L+  L+ L + +++ GDV FKLYDT+G P D+  D+   +GL+ ID   F QA
Sbjct: 362 LERGMLILNDALNEL-EGKVVPGDVVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQR RA+  S        E++   L+     + F+GY+         ED         
Sbjct: 420 MAEQRKRAQKAS-NFDVDYNEQLRSDLE-----SIFVGYE--------HEDN-------- 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  ++ +  +  +G+ V E  +G +  V+ D++PFYAEAGGQ GDTG  + D    
Sbjct: 458 -------TATITELFFKGQSVNELAAGAEGTVILDESPFYAEAGGQAGDTGTLVTDAGGF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + D  K  + I    A + +  L    S++  ++   R  + +NHSATHL+H AL +IL
Sbjct: 511 SVKDTVKLGKAIAHKGAALSK--LSVGDSVLAKVNGVRRHAIKLNHSATHLMHAALKSIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +  D LRFD +H + ++  ++ ++E  VN+ I  N P+ T++M  E A  
Sbjct: 569 GEHVNQKGSLVQADRLRFDFSHFEAMSKEQVLAVETMVNEQILANHPLQTQLMGLEQAKE 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA AL G KY+D VRVVS+     G  S  LCGGTHV  TG+I L  I+SES I +G+R
Sbjct: 629 AGAMALFGEKYDDDVRVVSM-----GSFSMELCGGTHVERTGDIGLFKIISESGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG  A  H+  Q  +L S+++ LK    +   RV ++ E+ + L+   AK K ++
Sbjct: 684 RIEAVTGLTALQHVQQQTFELSSISAVLKTDVNSAGERVVQLIEQTKTLEKEVAKLKQEI 743

Query: 782 NV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                 DL    ++I  V  +S+ +  ++S  L++++D L+ +I SG+I+L G++   K 
Sbjct: 744 ANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GLATGDKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S++  VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG      D AIA V+ +L
Sbjct: 803 SLIAGVTKDLTHKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDTAIASVSEWL 861

Query: 897 KK 898
           ++
Sbjct: 862 QE 863


>gi|163749985|ref|ZP_02157229.1| alanyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161330259|gb|EDQ01240.1| alanyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 874

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/909 (43%), Positives = 569/909 (62%), Gaps = 56/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            +++RT FLE+F+KNGH+++ SSSL+P NDP+L+FTN+GM  FK +F G++K  Y   T+
Sbjct: 5   TAALRTAFLEYFRKNGHQVVDSSSLVPVNDPSLLFTNAGMNQFKGVFLGEDKRNYTRATS 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  + + 
Sbjct: 65  SQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITFAWNFLTQELKIPKE 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           RL +T+Y+ D EA+ +W K  G+SAD +IRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 125 RLCVTIYETDNEAYDIWTKEIGISADNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEIF 184

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+  E   LPK S+DTGMG+ER+A 
Sbjct: 185 YDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGEMLALPKPSVDTGMGIERIAA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           ++Q   +NY+ID+F+ LI+ + ++  +    N  +  RVI DH+RS +FLIADG++P+NE
Sbjct: 245 IMQGVHSNYEIDIFQALIKKTAEILAVTDLENKSL--RVISDHIRSCAFLIADGVMPSNE 302

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG T+     L+P L   MG A   L++ + ++ ++L++E+
Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLIEVMGEAAKGLVETQAIVVKSLKAEE 362

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E+F +TL+RGL +LDG L+ L  + +L+G+ AFKLYDT+G P+D+  D+   R +  +D 
Sbjct: 363 EQFARTLERGLGILDGALNALSGN-VLDGETAFKLYDTYGFPVDLTADVCRERDIT-VDE 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+  QR RA+A       GT       + E+   T+F GY               
Sbjct: 421 AGFELAMSAQRKRAQAAGQ---FGTDYNDSLKIDEE---TEFSGY--------------- 459

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                 IDL +  ++ + AI +QG+ V E  +G++  VV D TPFY E+GGQ GD+G   
Sbjct: 460 ------IDLVS--NAKITAIYKQGKSVTEINAGEEALVVLDTTPFYGESGGQCGDSGTLS 511

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +GI   + D QK  + +  H   ++ G L    SL  ++D   R++  +NHS THLLH 
Sbjct: 512 TNGIEFIVKDTQKYGQAVG-HLGALKTGSLSLGQSLEASVDKSLRQRTELNHSVTHLLHA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HVSQ GS + P+ LRFD +H + +   EL+++ED VN  I  N  +  ++M 
Sbjct: 571 ALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNSQIRHNHELTAQVMT 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE  
Sbjct: 631 IDAAKEQGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEGG 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           I AGIRRIEA+TG  A +++  Q  +L   A  LK   G+VV +++   E  ++L  +L 
Sbjct: 686 IAAGIRRIEAVTGAAAMAYVTSQKVELDQAAKLLKADSGSVVIKLKAQLERTKQLEKELS 745

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGI 830
             K K           +  ++N +  +I ++D  E   L+ + D L++K+ SGI++L GI
Sbjct: 746 QLKDKFAAATSADLAGEAQEINGVKVLIKKLDGVEPSALRGLQDELKQKLGSGIVVL-GI 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K ++++ VT+DL  +  A +L A ++A V  GG GGGRP MAQ+GG      D A+
Sbjct: 805 TGDAKVNLIVGVTKDLTSKVKAGELVANIAALV--GGKGGGRPDMAQAGGCQPENLDAAL 862

Query: 890 AGVASFLKK 898
             V+S+LK+
Sbjct: 863 NKVSSWLKE 871


>gi|330720929|gb|EGG99105.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 865

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/900 (45%), Positives = 559/900 (62%), Gaps = 46/900 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+F  + GHE L SSSL+P NDPTL+FTN+GMV FK +F G E   Y   TT 
Sbjct: 4   SDIRNAFLDFLVQQGHERLASSSLVPGNDPTLLFTNAGMVQFKELFLGNETRSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L + +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKVEAIKFAWTFLTEVMGLPEEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TVY+ED+EA  +W K  G+SA++  R+   DNFWSM +TGPCGPC+EIF+D GE + 
Sbjct: 124 LWVTVYEEDDEAADIWLKDMGVSAERFSRLGKKDNFWSMGDTGPCGPCTEIFYDHGEEVA 183

Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS  E+G+RYIEIWNLVFMQFE+        LPK S+DTGMGLER+A V+Q   NN
Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFERAADGTMTPLPKPSVDTGMGLERIAAVMQGVHNN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF+ L++ + +V G+    N  +  RVI DH+RS SFL++DG++P+N+GRGYVLRR
Sbjct: 244 YEIDLFQTLLKRAAEVVGVSDTSNTSL--RVIADHIRSCSFLVSDGVIPSNDGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  +     ++ AL  EMG AYPEL+  +  IE+ L  E+E+F KTLD
Sbjct: 302 IIRRAIRHGHKLGMKDAFFHKIVSALVDEMGEAYPELVTRQAQIEQVLAKEEEQFAKTLD 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ + +  LS L  +EI  G+  F+LYDT+G P+D+  DI   R L  +DI  F QA++
Sbjct: 362 QGMQIFERDLSELKGNEI-PGETIFRLYDTYGFPVDLTADIARERNLI-MDIAGFEQAMQ 419

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RARA S          + F      G T F GYDLL             CQ     
Sbjct: 420 EQRERARAAS-SFDVDMRADVVFE-----GETDFCGYDLLTEQ----------CQ----- 458

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   + A+V++G+  E  + G    VV D TPFYAE+GGQ+GD G    D    ++
Sbjct: 459 --------ISALVKEGDTAESLIEGDTGVVVLDHTPFYAESGGQVGDVGTLQTDEAVFRV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           T+  K+A G  +H  +VERG       LV  +D + R+  ++NHSA+HLLH AL  +LG 
Sbjct: 511 TNTVKQA-GTHLHQGVVERGSFTVGTKLVAEVDTRKRQATALNHSASHLLHAALRDVLGE 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS ++P+ LRFD +H + +T+ +L +IE  VND I  N  V T +M  EDA+ SG
Sbjct: 570 HVAQKGSLVSPERLRFDFSHFEAVTAQQLSAIEAMVNDKIQANSEVGTELMALEDAMNSG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             AL G KY+D VRV+S+   DG   S  LCGGTHV+ TG+I +  I+SES + AG+RRI
Sbjct: 630 VTALFGEKYSDEVRVLSM--ADG--FSVELCGGTHVNRTGDIAVFKIISESGVAAGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-- 781
           EA+TG  A ++    ++ L  +A  LK +    V +V+ +  + R+L+   A  K +L  
Sbjct: 686 EAVTGNAALTYYQNLEQDLTEIAGVLKSAPEQTVEKVQLLASKNRQLEKELAALKAKLVT 745

Query: 782 -NVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +  DL+   +    V  ++H    VD K L S MD L+ K+ + +I+L   +K  K S+
Sbjct: 746 SSGRDLASEAVELNGVKVLAHAFEGVDGKTLLSTMDQLKSKLGTAVIVL-ATAKGDKVSL 804

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT+D  DR  A +L  + A  + GG GGGRP MAQ+GG        A+A V  +L++
Sbjct: 805 VAGVTKDATDRVKAGELVNMVAGQV-GGKGGGRPDMAQAGGNQPEAIPAALASVVPWLEQ 863


>gi|294141935|ref|YP_003557913.1| alanyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293328404|dbj|BAJ03135.1| alanyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 874

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/911 (43%), Positives = 570/911 (62%), Gaps = 58/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++RT FLE+F KNGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRTAFLEYFHKNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  + +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITYAWNFLTQELKIPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D EA+ +W K  G+S D +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGVSEDNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+  +   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGDMLALPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +    N  +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTDLENKSL--RVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A   L++ + ++ ++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLILVMGDAAKGLVETQDIVVKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNAL-TGKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDR 473
              F  A+ EQR RA+A        T       + E+   T+F GY DL+  +K      
Sbjct: 420 EAGFELAMSEQRKRAQAAGQ---FATDYNDSLKIDEE---TEFSGYLDLVSNAK------ 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             + AI ++GE V E  +G++  VV D TPFY E+GGQ GD+G 
Sbjct: 468 ------------------ITAIYKEGESVTEINAGEEAVVVLDTTPFYGESGGQSGDSGT 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G    + D QK  + I  H   ++ G L    SL  ++D   R++  +NHS THLL
Sbjct: 510 LSAAGFDFIVKDTQKYGQAIG-HIGTLKTGSLSLGQSLEASVDKALRQRTELNHSVTHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HVSQ GS + P+ LRFD +H + +   EL+++ED VN  I  N  +  ++
Sbjct: 569 HAALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNTQIRCNHELTAQV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE
Sbjct: 629 MTIDAAKDKGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           + I AGIRRIEA+TG  A +++ GQ  +L   A  LK   G+VV +++   +  ++L  +
Sbjct: 684 AGIAAGIRRIEAVTGAAAMAYVAGQKSELDKAAKLLKADAGSVVTKLKAQLDRTKQLEKE 743

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
           L   K KL          +  ++N +  +I ++D  E   L+ ++D L++K+ SGI++L 
Sbjct: 744 LSQLKDKLAAATSADLAGEAQEINGVKVLIKKLDGVEPGALRGLLDELKQKLGSGIVVL- 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           GI+ + K ++++ VT+DL  +  A +L A ++A+V  GG GGGRP MAQ+GG      D 
Sbjct: 803 GIAGDAKVNLIVGVTKDLTSKVKAGELVANIAAQV--GGKGGGRPDMAQAGGSKPENLDA 860

Query: 888 AIAGVASFLKK 898
           A+  VAS+L++
Sbjct: 861 ALNQVASWLQE 871


>gi|293392770|ref|ZP_06637088.1| alanine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291424629|gb|EFE97840.1| alanine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 875

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/909 (44%), Positives = 568/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAIAYAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W+   G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFNIWQNEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A  +VTG     N  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLDNKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL   + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIGVMGPAADELKSQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   RGL  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+E QR RAR  S G G+      + SL    GA++F GYD          D
Sbjct: 420 VDEAGFEAAMEAQRRRARESS-GFGAD-----YNSLIRVDGASEFCGYD---------HD 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           ++               + + A+ + G+ V+E  +G++  VV D TPFY E+GGQ+GD G
Sbjct: 465 QQ--------------QAKITALFRDGQPVDEIHAGEEAVVVLDATPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   + +G+L+   S+   ID   R ++ +NHSATHL
Sbjct: 511 ILKSAAAEFVVGDTQKYGQAIG-HQGKLAQGVLKVGDSVDALIDQVRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   +++++ED VN  + +NLPV T 
Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRAVEDLVNQQVRRNLPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I S
Sbjct: 630 VMALDDAKEKGAMALFGEKYDDHVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIQS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIATLHQQSDLLQEVAHLVKGDGNNLSEKVRAVLDRTRTLEK 744

Query: 773 -IHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827
            +   +  Q  +E  S   K   VN +  ++S++D+ E   L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKDQQAALESASLSSKAKQVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + E K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + N    
Sbjct: 805 A-TTAEGKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGSDVNALPA 862

Query: 888 AIAGVASFL 896
           A+  V +++
Sbjct: 863 ALDSVEAWV 871


>gi|167623167|ref|YP_001673461.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|205830204|sp|B0TK15|SYA_SHEHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167353189|gb|ABZ75802.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 874

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/908 (43%), Positives = 562/908 (61%), Gaps = 56/908 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW  LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ +  + G+    N  +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAAILGVTDLENKSL--RVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGDAAKGLQETQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNEL-TTKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQR RA+A      +G  +  +    +    + F GY              
Sbjct: 420 EAGFEAAMAEQRKRAQA------AGQFDTDYNEGLKIDEQSSFTGY-------------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                   +L N   + V AI + GE  E   +G +  +V D TPFY E+GGQ GD G  
Sbjct: 460 -------TELNN--QATVTAIFKSGEAAETITAGDEAVIVLDNTPFYGESGGQSGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I DGI   + D QK  + I  H   V  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 511 IADGIEFTVIDTQKYGQAIG-HIGRVVTGEIKAGQSLTANVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  +   +M
Sbjct: 570 AALRQVLGAHVSQKGSLVDPERLRFDFSHFEGVKANELKEVEELVNTQIRRNHELTAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L  +L
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAATLLKGDSASVVAKLKAQLDKTKQLEKEL 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL          +  +VN +  ++ +   VD+  L+ + D L++K+QSGI++L  
Sbjct: 745 SQLKDKLAAATSADLAGEAVEVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I+ E K ++++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG      D A
Sbjct: 804 IAGEDKVNLIVGVTKDLTGKVKAGELVASIAVQV--GGKGGGRPDMAQAGGSQPENLDGA 861

Query: 889 IAGVASFL 896
           +  V  ++
Sbjct: 862 LEQVIPWI 869


>gi|260599084|ref|YP_003211655.1| alanyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260218261|emb|CBA33198.1| Alanyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 875

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/909 (44%), Positives = 571/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGAQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A   VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFQKLIKAVANVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGSAGDELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD           
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDQTE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ V A+   G+ VE+  +GQ+  VV D+TPFYAE+GGQ+GD G
Sbjct: 466 ---------------LTARVTALFIDGKSVEQVAAGQQAVVVLDETPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G    + D QK  + I  H   +  G+L+    +   +D   R ++ +NHSATHL
Sbjct: 511 ELKGNGFTFTVNDTQKYGQAIG-HIGELTSGVLKVGEGVKAEVDQARRERIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +   GLRFD +H + +   E++ +ED VN  I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY DRVRV+S+     G  S+ LCGG H S TG+I L  IVS
Sbjct: 630 VMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A S +  Q+++L  L+  LK     +  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQQAAQESANLSSKAIDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K S++  V++D+ +R  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTERVKAGELVGMIAQQV-GGKGGGRPDMAQAGGTDAAALPA 862

Query: 888 AIAGVASFL 896
           A+  V S++
Sbjct: 863 ALGSVESWV 871


>gi|330502669|ref|YP_004379538.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328916955|gb|AEB57786.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 874

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/911 (45%), Positives = 562/911 (61%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+  +++IRI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGIPTERMIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ AS +  G   EG    + +V+ DH+RS SFLIADG+ P+N
Sbjct: 244 AVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGVTPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ GDV FKLYDT+G P+D+  DI   R L+ +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLASL-QGSVIPGDVVFKLYDTYGFPVDLTADIARERELS-VD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A + G+      K+          T+F+GY             
Sbjct: 420 EEGFEREMEAQRERARSASAFGMDYNALVKV-------DADTRFLGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    + T+G   I+ A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD G 
Sbjct: 460 ---------EGTSGSGKII-ALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDCGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G G+R  + D   KA G F+HH +V +G L    S+   +D + R+  ++NHSATHLL
Sbjct: 510 LEGAGVRFDVRDT-TKAGGAFLHHGVVAKGGLNVGASVKAEVDAEVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   ++K +ED VN ++ +N  V T +
Sbjct: 569 HEALRIVLGDHVQQKGSLVNSQRLRFDFSHFEAIKPEQIKQLEDIVNRVVRENSAVETEV 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHV+ TG+I L  IVSE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVARTGDIGLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ NV+ ++  + E  R+L  +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLEKE 744

Query: 772 LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K       DL  S   +     ++  +  +D K L +++D L+ K+ S +I+L 
Sbjct: 745 LEQLKAKAASAAGNDLAGSAVDVKGTKVLAARLDGLDGKALLALVDQLKNKLGSAVILLG 804

Query: 829 GISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G+ +EK   VL+  VT+DL  +  A DL R  A    GG GGGRP MAQ GG +  K D+
Sbjct: 805 GVFEEK--VVLVAGVTQDLTSKLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGVDAGKLDE 861

Query: 888 AIAGVASFLKK 898
           A+A  A+ +++
Sbjct: 862 ALALAATLVEQ 872


>gi|78357417|ref|YP_388866.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123552081|sp|Q30YS5|SYA_DESDG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78219822|gb|ABB39171.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 880

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/905 (43%), Positives = 551/905 (60%), Gaps = 48/905 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEFF+KNGHE++ SSSL+P +DPTL+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRHRFLEFFRKNGHEVVDSSSLVPNDDPTLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWSFITEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LYIT+Y +D+EA KLW+ ++G+ +++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKEKLYITIYRDDDEAEKLWQSVAGVPSERIYRLGEKDNFWSMGDTGPCGPCSEIHIDQG 180

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C P    G   + +R++EIWNLVFMQ++Q     R  LP   IDTGMGLER+A V 
Sbjct: 181 ADMACGPDCGIGKC-DCDRFLEIWNLVFMQYDQAPDGTRTPLPNPCIDTGMGLERIAAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPAN 294
           Q   +N+D DLF+  I  + ++ G+ Y  ++       RVI DH R+ +F+IADGILP+N
Sbjct: 240 QNVRSNFDCDLFQAFINYTAELAGVSYRKDSEDTDTALRVIADHSRAIAFMIADGILPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RL+G     +      +  EMG A+PEL++ K  +   +R E
Sbjct: 300 EGRGYVLRRLIRRAYRFGRLIGLEGSYLYKTALKVVEEMGGAFPELLENKDFMARVVREE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF KTLD+GL+LL+  LS L       + GDVAFKLYDT G PLDI+ DI   RG + 
Sbjct: 360 EERFNKTLDKGLLLLEDELSALTARNSTCVAGDVAFKLYDTFGFPLDIVNDIAEKRGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + ++EQ+SRA+A   G G  T    + +L E+  A++F+GYD L         
Sbjct: 419 VDEDGFKKLMQEQKSRAKAAWKGGGEQTLAARFQALLEEGIASEFVGYDHLSAE------ 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S I+  + +  E VE   +G    +V  +TPFY E+GGQLGDTG
Sbjct: 473 ----------------SRIIALLGEDMESVEALPAGAAGYLVSTRTPFYGESGGQLGDTG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            A+ +    ++TD  K +  + VH   V +G L  + ++ LT+    R   + NH+ TH+
Sbjct: 517 DAVSETGSAEVTDTLKPSAKLLVHVVKVSQGELLRDQAVTLTVREGQRFASARNHTCTHI 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS + P+ LRFD TH   +T  E+ ++E+ VN +I  ++ + + 
Sbjct: 577 LHAALRKVLGDHVKQAGSLVGPERLRFDFTHISAMTPEEILAVENEVNRVILSDIALNSE 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  +DA+  GA AL G KY   VRVVS+  E     S  LCGGTH+ +TG+    YI S
Sbjct: 637 HMAYDDAVQKGAMALFGEKYESEVRVVSIPGE-----SVELCGGTHLRATGQAGSFYITS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG  A    M Q  +L  +A  +K   G++ GRV+ + +E R L+ 
Sbjct: 692 ESGVAAGVRRIEAVTGWDAVRLFMQQRAELHEVAGLVKGKPGDIAGRVKTLQKEVRTLKK 751

Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              K   Q       N+ D S  ++  V  ++  +   + K L+ VMD ++ K+ SG+  
Sbjct: 752 DMEKLAAQAASGKGRNLMD-SVEEVNGVKLLAASLPGANVKALREVMDDVRSKLTSGVAC 810

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           LV +  + K  +LI V++DL DRF A  L + ++A++  GG GGGRP MAQ+GG +    
Sbjct: 811 LVAVDGD-KVHMLIAVSKDLHDRFTAPALIKDVAARI--GGSGGGRPDMAQAGGTDPQGV 867

Query: 886 DQAIA 890
           + A A
Sbjct: 868 EDAFA 872


>gi|188534789|ref|YP_001908586.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|188029831|emb|CAO97712.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 875

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/910 (44%), Positives = 565/910 (62%), Gaps = 58/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR +FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQSFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT +  F L
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIAFAWELLTSDQWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF++W+K  G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAFEIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF  LI++  QVTG +   N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIKSVAQVTGAEDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFFKLVAPLIAVMGTAGEDLKRQQSQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+RGL LLD  L +L  D  L+G+  F+LYDT G P+D+  D+   R L  
Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQGD-TLDGETVFRLYDTFGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E+QR RAR  S G G+     I         A++F GY  L+        
Sbjct: 420 IDEAGFERAMEQQRQRARKAS-GFGADYNNVIHIDQ-----ASEFKGYQQLQ-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ + AI   GE  +   +GQ+  +V D TPFYAE+GGQ+GDTG
Sbjct: 466 ---------------LNAAITAIFVDGESADTISAGQEGVIVLDSTPFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     ++D  K A+ I  H   +  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELRGNSASFMVSDTHKYAQAI-GHSGKLAAGKLRVGDSVSAQVDEARRERIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +T+ E++ +E+ VN  + +NL + T 
Sbjct: 570 LHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMTAQEIRQVEEIVNAQVRRNLSIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHANRTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +  N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAHLVKANNSNLNEKVRALLDHTRALEK 744

Query: 772 LIHAKRKLQLNVEDLSCHKIA----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   R  Q   E  S    A        +   +S+V+ K L++++D L+ ++ S II+L
Sbjct: 745 QLQQLRDQQAAQESASLSSKAVTLKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S++  VT+DL DR  A +L   L+ +V  GG GGGRP MAQ+GG +     
Sbjct: 805 ATVV-DGKVSLITGVTKDLTDRIKAGELVGELALQV--GGKGGGRPDMAQAGGADALALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|77359489|ref|YP_339064.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|123589570|sp|Q3ILF3|SYA_PSEHT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76874400|emb|CAI85621.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 868

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/903 (44%), Positives = 552/903 (61%), Gaps = 56/903 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   T+
Sbjct: 6   TAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L + 
Sbjct: 66  SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWQFLTEEVKLPKE 125

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L +T+Y +DEEAF  W    GL AD+IIRI T DNFWSM +TGPCGPCSEIF+D GE I
Sbjct: 126 KLLVTIYHDDEEAFNYWSNDIGLPADRIIRIATADNFWSMGDTGPCGPCSEIFYDHGEHI 185

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GG PGS EE G+R+IEIWNLVFMQ+ +QN      LPK S+DTGMGLER+A +LQ   +
Sbjct: 186 WGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERIAAILQGVHS 245

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NY+IDLFK LI A+  VT  +   +  +  RV+ DH+RS +FLI+DG++P+NEGRGYVLR
Sbjct: 246 NYEIDLFKGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGKTL
Sbjct: 304 RIIRRAVRHGNKLGAQGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKTL 363

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RGL +L+  LS L K +++ GD+ FKLYDT+G P D+  D+   R +  ID   F + +
Sbjct: 364 ERGLAILEESLSDL-KGDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDNKGFEECM 421

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             QR  A+                    K+GA           +  +K D++   +    
Sbjct: 422 AVQRKTAQQAG-----------------KFGADY---------NDQLKSDKQTTYKGYT- 454

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
             T   S+ V  +    E V     GQK  V+ D+TPFYAE+GGQ+GDTG     G    
Sbjct: 455 --TTSHSATVVEVFAGSESVSLLEDGQKGIVILDRTPFYAESGGQVGDTGVISVAGGEFT 512

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +T+  K     F HH IV+ G +     +  TID   R ++  NH+ATH+LH  L  +LG
Sbjct: 513 VTNTTKLGNA-FAHHGIVQ-GRIGLNDKVEATIDDARRERIKKNHTATHILHETLRQLLG 570

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS +  + LRFD +H + +T  EL+ IE  VND I  N  + T +M  +DA A 
Sbjct: 571 EHVGQKGSLVQAERLRFDFSHFEAVTKEELREIERVVNDEIRCNFALSTELMAIDDAKAK 630

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+RR
Sbjct: 631 GAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVRR 685

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+TG  A +++  Q++KL  +A+ +K    +V+ +V  + ++ ++L+    K+  QLN
Sbjct: 686 IEAVTGADAIAYVSEQEQKLNDVAAVVKADSASVLEKVTALLDKSKQLE----KQIAQLN 741

Query: 783 VEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +  S         + ++N +  +I+ V   +SK L+ ++D L+ KI SG+I L G++ +
Sbjct: 742 DKLASAAGASLLDSVVEINGIKLLIANVKGTESKALRGMVDDLKNKIGSGVIAL-GVASD 800

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S++  VT+DL  R  A +L    A  + GG GGGRP MAQ+GG        A+  V 
Sbjct: 801 DKVSLIAGVTKDLTGRVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPENLTAALDSVT 859

Query: 894 SFL 896
           ++ 
Sbjct: 860 AWF 862


>gi|259909418|ref|YP_002649774.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224965040|emb|CAX56571.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283479495|emb|CAY75411.1| alaS [Erwinia pyrifoliae DSM 12163]
          Length = 876

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/906 (44%), Positives = 558/906 (61%), Gaps = 58/906 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F L
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAFDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF  LI++  Q+TG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIKSVAQLTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+RGL LLD  L +L  D  L+G+  F+LYDT G P D+  D+   R L  
Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQSD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E+QR RAR  S G G      I         A++F GY  L+        
Sbjct: 420 IDEAGFERAMEQQRQRARDAS-GFGCDYNNVIHIDQ-----ASEFKGYQQLQ-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ + AI   G+  +   +G++  +V D TPFYAE+GGQ+GDTG
Sbjct: 466 ---------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+   L +++ QK A+ I  H   +  G LR    +   +D   R ++ +NHSATHL
Sbjct: 511 ELQGNSASLIVSNTQKYAQAI-GHSGKLATGELRVGERVAAQVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS +    LRFD +H + +T  E++ +E+ VN  I +NLP+ T 
Sbjct: 570 LHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q+++L  ++  +K +  N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALEK 744

Query: 773 IHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++   LS   IA      +   +S+V+ K L++++D L+ ++ S II+L
Sbjct: 745 QLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ + K S++  VT+DL DR  A +L   L+ KV  GG GGGRP MAQ+GG +     
Sbjct: 805 ATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV--GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGV 892
            A+AGV
Sbjct: 862 AALAGV 867


>gi|238921100|ref|YP_002934615.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
 gi|238870669|gb|ACR70380.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 875

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 570/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M ETGPCGPC+
Sbjct: 124 PKEKLWVTVYESDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGETGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI  + +V G+    +  +  RVI DH+RS +FL++DG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAETARVIGVSDLSSKSL--RVIADHIRSCAFLVSDGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG++   L Q + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGASADALAQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G PLD+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLTLLDDELSTLDGD-TLDGETAFRLYDTYGFPLDLTADVCRERSLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR RAR  S G G+      + S+    G+T F GY L       ++D
Sbjct: 420 VDEEGFERAMEAQRCRARESS-GFGAD-----YNSMIRVDGSTDFTGYHL------QQQD 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            ++V A+   GE V+   +G++  VV  QTPFYAE+GGQ+GD G
Sbjct: 468 -----------------ALVTALFHNGEAVDVLQAGEEGVVVLAQTPFYAESGGQVGDRG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +  G R  + D QK  + I  H   V +G LR    +   ID   R ++  +HSATHL
Sbjct: 511 ELMAQGCRFVVEDTQKYGQAIG-HLGKVAQGSLRVGERVQAGIDGARRERIRQSHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL ++LG HV+Q GS ++   LRFD +H++ +   +++ +ED VN  I +NLP+ T+
Sbjct: 570 MHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPRQIRQVEDIVNAQIRRNLPIDTQ 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IVS
Sbjct: 630 EMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLEK 744

Query: 772 LIHAKRKLQLNVEDLSCH-KIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827
            +H  +  Q   E  S   K  +VN +  ++S++D  E   L++++D L+ ++ S I++L
Sbjct: 745 ALHQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMSSCIVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              ++  K S++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     Q
Sbjct: 805 A-TAEAGKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDTAALPQ 862

Query: 888 AIAGVASFL 896
           A+A VA ++
Sbjct: 863 ALASVADWV 871


>gi|145220|gb|AAA03208.1| alanyl-tRNA synthetase [Escherichia coli]
          Length = 876

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/894 (44%), Positives = 556/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSS  P  DPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSRYPITDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N        NFW M  TGPC PC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRINDNKGAPYASGNFWRMGGTGPCDPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HVS  GS +    LRFD +H++ +   E++++ED VN +I +NLP+ T 
Sbjct: 570 MHAALRQVLGTHVSHKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTLIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|237809468|ref|YP_002893908.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|237501729|gb|ACQ94322.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 874

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/913 (43%), Positives = 560/913 (61%), Gaps = 61/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y   T
Sbjct: 4   TTSEIRTAFLEYFRSQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGGDIRPYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LTK   L Q
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWDFLTKVLQLPQ 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+EA+ +W    G+SAD+I+RI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 EKLLVTVYATDDEAYGIWANEIGVSADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+R+IEIWN+VFMQF +Q       LPK S+DTGMG+ER++
Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTLEPLPKPSVDTGMGIERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+FK LIQ + ++ G+    N  +  RVI DH+RS SFLI+DG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFKTLIQNAAKIVGVTDLENKSL--RVIADHIRSCSFLISDGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ + R LG T+     L+ AL   MG AYPEL   + ++E  L+ E
Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATDTFFYQLVGALVALMGEAYPELKSQQPVVERVLKLE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TLDRGL LL+  L  LG    + G V FKLYDT+G P D+  D++  RG   ID
Sbjct: 362 EEQFVRTLDRGLSLLEEELVRLGDVREIPGSVVFKLYDTYGFPADLTADVVRDRGYT-ID 420

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
             +F Q +E+QR RA+ A    +      KI  +       + F GY           +R
Sbjct: 421 EAAFQQEMEKQRERAKDASHFAVDYNKQLKIEQT-------SDFCGY-----------ER 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG- 532
            +             ++ + AI    ++V     G +  +V + TPFYAE+GGQ+GD G 
Sbjct: 463 TI------------ANTTITAIYLADQLVSTLKDGDQALIVLENTPFYAESGGQMGDAGL 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +GD +   +TD  K  + I VH   VE+G  +T  ++   +D   R   +++HSATHL
Sbjct: 511 LRVGDAL-FAVTDTHKIGQAI-VHKGFVEQGSFKTGDTVEAIVDNTRRNATALHHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS + PD LRFD +H + I  A L+ IE +VN  I +N+ + T+
Sbjct: 569 LHAALRNALGEHVAQKGSQVGPDRLRFDFSHFEAINPAALRQIEQSVNAEIRKNVLIDTQ 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ +DA  SGA AL G KY D VRVV +     G  S+ LCGGTH   TG+I    I+S
Sbjct: 629 LMSLDDAKTSGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHAKHTGDIGFFKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           E+ + AG+RRIEA+ G+ A +H+    E+L   AS +K    +VV ++ ++ E      R
Sbjct: 684 ENGVAAGVRRIEAVAGEAALAHIHQLGEQLDEAASIVKADALSVVSKIRQMQERSRLLER 743

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825
           +++ + AK   Q   + LS  +I  +N    ++++   VD+K L++ MD L+ ++QS ++
Sbjct: 744 EIETLKAKLASQAGNDLLS--QIMQINGQQVLVAQVEGVDAKSLRTTMDDLKNRLQS-VV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ML+    + K S++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG +    
Sbjct: 801 MLLAAVNDGKVSLIAGVTADLTSKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDATAL 859

Query: 886 DQAIAGVASFLKK 898
             A+  V S+L++
Sbjct: 860 PGALKSVQSWLEE 872


>gi|300718056|ref|YP_003742859.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299063892|emb|CAX61012.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 875

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/910 (44%), Positives = 559/910 (61%), Gaps = 58/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTGAQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAFDIWEKEVGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+R+IEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRFIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF  LI +  +VTG     +  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFARLIASVAEVTGATDLTSKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG        L+  L + MGSA  EL   +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAQGSFFWKLVGPLISVMGSAGEELASQQSQVEQILK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+RGL LLD  L  L  D  L+G+  F+LYDT G P D+  D+   R L  
Sbjct: 362 TEEEQFAKTLERGLALLDEELEKLQGD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E+QR RAR  S G G+  ++ I         A+ F GY+ L         
Sbjct: 420 IDEAGFEKAMEQQRQRAREAS-GFGADYSKVIQID-----AASAFKGYEQLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++S V AI   G+   E V+GQ+  +V D+TPFY E+GGQ+GDTG
Sbjct: 466 ---------------LNSTVTAIFVDGKPATEIVAGQEGVIVLDETPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK  + I  H   +  G +R    L   +D   R ++ +NHSATHL
Sbjct: 511 ELKSDAATFTVNDTQKYGQAI-GHTGTLAAGQIRIGDRLSAQVDQARRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   E++ +E+ VN  + +NL + T 
Sbjct: 570 LHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMKPEEIRQVEEIVNAQVRRNLAIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  E A + GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMELEAAKSHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A   +  Q E+L+ +A  +K +  N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALGLMYAQSEQLQEIAHLIKANNSNLNEKVRAMIDHVRGLER 744

Query: 773 IHAKRKLQLNVED---LSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++   LS    +I     +   +S V+ K L++++D L+ +++S II+L
Sbjct: 745 ELQQLKDQQAAQESASLSSKAIEIKGTRLLVSELSNVEPKMLRTMVDELKNQLKSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ + K S++  VT+DL DR  A +L   L+ +V  GG GGGRP MAQ+GG +     
Sbjct: 805 ATVA-DGKVSLIAGVTKDLTDRVKAGELVGELAQQV--GGKGGGRPDMAQAGGTDAQALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|294634755|ref|ZP_06713284.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291091814|gb|EFE24375.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 875

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/910 (43%), Positives = 575/910 (63%), Gaps = 58/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTGAQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            Q +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PQEKLWVTVYESDDEAYNIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI  + +V G+    +  +  RVI DH+RS +FL++DG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAETARVIGVDDLSSKSL--RVIADHIRSCAFLVSDGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGHMLGAKESFFYKLVAPLIQVMGSAADELARQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G PLD+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDDELAQLDGD-TLDGETAFRLYDTYGFPLDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D + F +A+E QR RAR  S G G+      + SL    G+T F GY   R  +     
Sbjct: 420 VDEVGFEKAMEAQRRRARESS-GFGAD-----YNSLIRVEGSTDFTGYQ--RQQQM---- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + A+ + G+ V+   +G++  VV DQTPFYAE+GGQ+GD G
Sbjct: 468 -----------------ATITALFRNGQAVDALQAGEEGVVVLDQTPFYAESGGQVGDRG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+   + D QK  + I  H   V +G L+   SL  +ID   R ++ ++HSATHL
Sbjct: 511 ELSASGVSFVVDDTQKYGQAIG-HLGKVVQGHLQVGASLQASIDVARRDRIRLSHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL ++LG+HV+Q GS +    LRFD +H + +   +++ +E+ VN  I +NLP+ T+
Sbjct: 570 MHAALRSVLGTHVAQKGSLVNDGYLRFDFSHPEAMKPQQIRQVEEIVNAQIRRNLPIETQ 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IVS
Sbjct: 630 EMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GEFSTELCGGTHAERTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEQALQAMHQESDMLREAASLVKGDTQSVAEKIRGLMEKSRQLEK 744

Query: 773 IHAKRKLQLNVED---LSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
              + K Q   ++   LS   + +VN +  ++S+   V+ K L++++D L+ ++ S I++
Sbjct: 745 ALQQLKDQQAAQESASLSAQAV-EVNGVKLLVSQLHGVEPKMLRTMVDDLKNQMGSCIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   ++E K S++  V++DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LA-TAEEGKVSLIAGVSKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGSDVAALP 861

Query: 887 QAIAGVASFL 896
           QA+A V+ ++
Sbjct: 862 QALASVSDWV 871


>gi|269101880|ref|ZP_06154577.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161778|gb|EEZ40274.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   T
Sbjct: 4   STDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT   +L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKYAWEFLTTVLELPE 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 DRLLVTIYESDDEAFEIWNKEVGIPADRIVRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PG+ EE G+R+IEIWN VFMQ+ +Q       LPK S+DTGMG+ER+A
Sbjct: 184 FFDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQYNRQADGTMEPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+FK LI+ +  + G  Y+  +  + RV+ DH+RS ++LIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFKTLIKDAADIIG--YDDLSNQSLRVVADHIRSCAYLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ L+ E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGTAGSELKKQQEMVEKVLKIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E FG+TLDRGL +L+  L +L    IL+G+  FKLYDT+G P D+  D+   RG   ID
Sbjct: 362 EENFGRTLDRGLTILNEALDNL-DGSILDGETVFKLYDTYGFPADLTNDVARERGFT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F  A+EEQR RAR A   G+      K+          T+F GY+   G        
Sbjct: 420 EEGFEAAMEEQRQRARDAGQFGVDYNNVIKV-------DADTEFKGYEATDG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            ++ AI + GE V+   +G++  +V DQTPFYAE+GGQ GDTG 
Sbjct: 465 ---------------EGVIVAIYRDGEEVDALAAGEEAIIVLDQTPFYAESGGQCGDTGA 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+   + D QK    I  H   +  G L+    L  T+D+  R  +S+NHSATHL+
Sbjct: 510 LAAAGVAFTVADTQKFGHAIG-HKGTLTEGALKVGDKLAATVDHVRRGAISLNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD +H + +   +L+ +E  VND I  N  + T I
Sbjct: 569 HAALRKLLGEHVAQKGSLVKPDSLRFDFSHLEAVKPEQLREVERMVNDQIRLNHAIDTEI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D+VRV+S+     G  S+ LCGG H   TG+I L  IVSE
Sbjct: 629 MDIEAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHAKRTGDIGLFKIVSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  QDE+L   A  +K    +VV +VE +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIEALHAQDEQLAKAARLVKSDTASVVNKVEALVSHSKQLEKE 743

Query: 774 HAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  ++ +   ++  ++N +  +I+++   D+K L+ ++D L+ ++ SGI++L 
Sbjct: 744 IQQLKDKLAAQEGAGLINQAQEINGVKVLIAKLDGADNKALRGMVDELKNQLSSGIVVLG 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG + +    A
Sbjct: 804 NVS-DDKVGLIAGVTKDLIGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDASALPAA 861

Query: 889 IAGVASFLKK 898
           +    +++++
Sbjct: 862 LESAKAWIEE 871


>gi|52424403|ref|YP_087540.1| alanyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|59798509|sp|Q65VQ5|SYA_MANSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52306455|gb|AAU36955.1| AlaS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 875

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/914 (43%), Positives = 559/914 (61%), Gaps = 59/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVESSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIAYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKEVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GGLPG+ EE G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A VLQ   +NYDID+F+ LI+   Q+TG K   N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERIAAVLQHVNSNYDIDIFQTLIKKVAQLTGEKDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A   + Q + LIE+T
Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLADVMEHAGEIVNQKRALIEKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL+LLD  LS + KD +L+GDVAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLLLLDDALSQV-KDNVLSGDVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F + ++ QR+RA+A S  G+      K+        G T+F GY         
Sbjct: 418 T-IDEKGFEREMQAQRARAQASSNFGVDYNNVIKV-------DGQTEFKGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        + T+  S+ V A+   G+ VE   SG+   V+ D+TPFY E+GGQ+G
Sbjct: 461 -------------ETTSLSSAKVVALFTDGKSVERVQSGENAVVILDRTPFYGESGGQIG 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D    +I D QK  + +  H   +E G L    ++   +D + R  ++ NHSA
Sbjct: 508 DTGYIATDLAAFRINDTQKYGQ-VTGHIGQLESGSLSVGDTVSAQVDTERRLAVAANHSA 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS ++   LRFD    + I+  ++  IE  VN  I +N+ V
Sbjct: 567 THLLHAALRKVLGDHVAQKGSLVSESALRFDFIQPEAISKEQIIEIEAIVNRQIRENISV 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T +M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  
Sbjct: 627 TTEVMDIEAAKQKGAMALFGEKYGDLVRVVGMTG-----FSIELCGGTHVKRTGDIGLFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +VSES+I AGIRRIEA+T + A + L  Q   L   A  LK    ++V +++++ ++ +K
Sbjct: 682 VVSESAIAAGIRRIEAVTAENAINWLNNQQNILNQSADLLKSDTASLVEKIQQLQDKAKK 741

Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K  +Q    DL  S  KI D++ +   +  +++K L+ ++D L+ ++ SG
Sbjct: 742 AEKELQQLKEKAAMQAG-SDLAKSAVKINDISVIVQQLDGIETKSLRVMVDDLKNQLGSG 800

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+   +  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG    
Sbjct: 801 VIVFASVV-EDKVNLIVGVTADLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPE 858

Query: 884 KADQAIAGVASFLK 897
               A++  + +L+
Sbjct: 859 NVGAALSACSDWLE 872


>gi|293390902|ref|ZP_06635236.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951436|gb|EFE01555.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 874

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/914 (43%), Positives = 562/914 (61%), Gaps = 60/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ DEEA+K+W    G++A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIAAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+F+ LI  + ++TG K   N  +  RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKDLTNKSL--RVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + K ++L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEV-KGKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F + +E QR RA++ S  G+       +        G T+F GY         
Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGMDYNNVIHV-------DGITRFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + + L +             V A+   G+ V+   +GQ   V+ D TPFYAE+GGQ+G
Sbjct: 461 -TESETLAK-------------VTALFHDGKPVDTISAGQSAVVILDNTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   G+G    + D QK  + +F H   + +G L    S+   +D   R+ +S+NHSA
Sbjct: 507 DIGRLEGNGFNFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDEVRRQHISLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS ++   LRFD    +PI+ A+L  +E  VN  +  N P+
Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPI 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM  E A A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 KTDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K
Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K  LQ    DL  S  KI  V+ ++  +  +++K L+S++D+L+ ++ S 
Sbjct: 741 VEKELQTLKEKAALQAG-NDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+   +  E K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG    
Sbjct: 800 VIIFASVIDE-KVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPE 857

Query: 884 KADQAIAGVASFLK 897
             ++A++  + +LK
Sbjct: 858 NVNKALSVCSDWLK 871


>gi|56460839|ref|YP_156120.1| alanyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81599943|sp|Q5QUV7|SYA_IDILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56179849|gb|AAV82571.1| Alanyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 865

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/904 (43%), Positives = 570/904 (63%), Gaps = 52/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  FL +F + GHE +PS+S+IP NDPTL+FTN+GMVPFK++F G +K  Y   T
Sbjct: 4   NSAQIRDAFLNYFAERGHEKVPSASMIPGNDPTLLFTNAGMVPFKDVFLGTDKRRYDKAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK++AIQ AWD LTKE  L  
Sbjct: 64  SAQRCLRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKQAIQYAWDFLTKELKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++TV+ ED+EA+ +W K  G+  D+I RI   DNFWSM +TGPCGPCSE+F+D GE 
Sbjct: 124 EKLWVTVFTEDDEAYDIWVKDIGVPEDRISRIGEKDNFWSMGDTGPCGPCSEVFYDHGEE 183

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG PG+ EE G+RYIEIWNLVFMQ+ +Q       LP  SIDTGMGLER++ ++Q   
Sbjct: 184 VWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTLEPLPDPSIDTGMGLERISAIMQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGY 299
           +NY+IDLF+ LI+A+ ++ G     N++ N   RVI DH+RS SFLI DG++P+NEGRGY
Sbjct: 244 SNYEIDLFQALIKAAAEIIGT----NDLDNKSLRVIADHIRSCSFLITDGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +  LLG  +     L+  L  +MG AYPEL Q K +I++ L  E+++F 
Sbjct: 300 VLRRIIRRAVRHGHLLGAKDTFFFRLVDELARQMGEAYPELEQKKQIIKDALEREEQQFA 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +L   +  L K  ++ GDV FKLYDT+G P+D+  DI   + L  ID   F 
Sbjct: 360 RTLERGLAILSDEIGEL-KGNVIPGDVVFKLYDTYGFPVDLTADIAREQELT-IDEQGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+ EQR RA+  S   G    +++    K     T F GYD             V+ Q 
Sbjct: 418 QAMSEQRQRAQQASQ-FGMDYNQQLKSDNK-----TAFTGYD------------DVVGQA 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             ++L            + G+ VE+  +G+   VV  +TPFYAE+GGQ+GD G  + +G 
Sbjct: 460 KVVEL-----------FKDGKPVEQLQAGENGIVVLSETPFYAESGGQIGDKGVLVANGP 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD Q   + I  HH + +  +  ++ S+   ID + R  +  NHSATHLLH AL  
Sbjct: 509 AFEVTDTQYIGKAI-AHHGVAKAAVKLSD-SVKAEIDSERRENIKRNHSATHLLHAALRN 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  D +RFD +H +P+T+ +L  +E  VN  +  NLP+ T++M  ++A
Sbjct: 567 LLGEHVTQKGSLVEADKMRFDFSHFEPVTTEQLAQLEREVNAQVRANLPLQTQLMAIDEA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL G KY+++VRVV +     G  S  LCGGTHV +TG+I L  I SE  I +G
Sbjct: 627 KEAGAMALFGEKYDEQVRVVRM-----GDFSMELCGGTHVKATGDIGLFRITSEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIE +TG+ A  +   Q   L+ +A  LK    +V  +V+++  ++R+L+  + + + 
Sbjct: 682 VRRIEVVTGEAAVRYTQQQQSVLQQIAGELKTEPSSVAEKVQQLQHKFRELERKNEQLQQ 741

Query: 780 QLNVEDLS--CHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L  +       +  D+N +  II+E+D    K L+ ++D L+ ++ SGI++L G +   
Sbjct: 742 KLAQQAGGGLIAQAVDINGVKAIIAELDQADPKSLRGLVDDLKNQMGSGIVLL-GTANGD 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT DL  +  A D+   +A V+ GG GGGRP MAQ+GG    + ++A+A   +
Sbjct: 801 KVSLIAGVTTDLTSKVKAGDIVNQAANVV-GGKGGGRPDMAQAGGSLPEQLNEALATATT 859

Query: 895 FLKK 898
           +L++
Sbjct: 860 WLQQ 863


>gi|261867354|ref|YP_003255276.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412686|gb|ACX82057.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 874

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/914 (43%), Positives = 562/914 (61%), Gaps = 60/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ DEEA+K+W    G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIVAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+F+ LI  + ++TG K   N  +  RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKDLTNKSL--RVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGAAEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + K ++L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEV-KGKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F + +E QR RA++ S  G+      ++        G T+F GY         
Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGMDYNNVIRV-------DGITRFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + + L +             V A+   G+ V+   SGQ   V+ D TPFYAE+GGQ+G
Sbjct: 461 -TESETLAK-------------VTALFHDGKPVDTISSGQSAVVILDNTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   G+G    + D QK  + +F H   + +G L    S+   +D   R+++S+NHSA
Sbjct: 507 DIGRLEGNGFNFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDEVRRQRISLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS ++   LRFD    +PI+ A+L  +E  VN  +  N P+
Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPI 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM  E A A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 KTDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K
Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K  LQ    DL  S  KI  V+ ++  +  +++K L+S++D+L+ ++ S 
Sbjct: 741 VEKELQTLKEKAALQAG-NDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+   +  E K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG    
Sbjct: 800 VIVFASVVDE-KVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPE 857

Query: 884 KADQAIAGVASFLK 897
             ++A++  + +LK
Sbjct: 858 NVNKALSVCSDWLK 871


>gi|58584618|ref|YP_198191.1| alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|75497910|sp|Q5GSS5|SYA_WOLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58418934|gb|AAW70949.1| Alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 875

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/905 (43%), Positives = 552/905 (60%), Gaps = 78/905 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  F++FF +N H+ + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +   +
Sbjct: 3   LNEIRERFIKFFVRNNHKQVFSSPLIPEHDPTLMFTNAGMVQFKNIFTGIQKTDIKRAVS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  LD+ 
Sbjct: 63  SQKCLRVGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLDKN 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL IT+Y  D++++++W+K+SG S DKIIRI T+DNFWSM   GPCGPCSEIF+D  +  
Sbjct: 123 RLSITIYHTDDKSYEIWRKVSGFSNDKIIRIATDDNFWSMGNIGPCGPCSEIFYDYAK-- 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                 + +  +R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   +N
Sbjct: 181 -----PNLQNDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERVAAVMQNVYDN 235

Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           YDIDLF  LI  S++     Y GN  N   H++I DHLR+++FLIA+G+LP NEGR Y+L
Sbjct: 236 YDIDLFSALISKSQE-----YCGNVENKAAHKIIADHLRAAAFLIAEGVLPGNEGRNYIL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RR++RRA+ Y   LGY +PL+  + P L        MG  YPELI+AK LIE TL+SE+E
Sbjct: 291 RRLIRRAVRYIHQLGYNDPLLHRIFPVLIDSTSSAYMGGVYPELIRAKSLIETTLKSEEE 350

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL +G+ LL    + L   + L+G+ AFKLYDT+G PLDI  DIL  R +   D  
Sbjct: 351 NFKDTLIKGINLLKKFTTDLKPGDTLSGESAFKLYDTYGFPLDITLDILKERKI-NFDQK 409

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+EEQ+ RARA   G G  + E+IWF+L +K+G T+F+GY+         +D KVL
Sbjct: 410 GFDNAMEEQKERARAKWTGSGEKSIEQIWFNLIDKFGKTEFVGYEFSE-----VKDAKVL 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                             +  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I 
Sbjct: 465 V----------------ILSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSFII 508

Query: 537 DGIRLQI-TDVQKK--------AEGI------------FVHHAIVERGILRTEMSLVLTI 575
             I   + T +QKK         EGI            ++H  IV+ G +  +  +  + 
Sbjct: 509 PSITPVLDTKIQKKNDRSCDRITEGIAIVENTNKVNDLYLHRCIVKSGSICKDDIVTAST 568

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R+ L  NHSATHLLH AL  ILG HV+Q GS I PD LRFD +H+  +T  +L  I
Sbjct: 569 DKERRQNLRRNHSATHLLHFALRKILGDHVTQKGSLIAPDRLRFDFSHNTQVTRDQLSLI 628

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED VN +I +NL   T+I +   AI  GA AL G KY D+VRVV++        S  LCG
Sbjct: 629 EDMVNSLIRENLSAFTKIQSMNQAIGEGAMALFGKKYGDQVRVVNIG------DSKELCG 682

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV  TGEI L  I++E SI +G+RRIEA+TGQ A  +    +  L+ +A  +K     
Sbjct: 683 GTHVERTGEIGLFKIITECSIASGVRRIEALTGQEAIDYARDNEINLRKIAELVKAPVNE 742

Query: 756 VVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           +  R+  + +E ++ +  I +  K  ++ E++   +I  +NF+SH  +++ +  ++    
Sbjct: 743 ITSRLSILNQERKESETKIKSLYKKLVSAENIKSIEINGMNFVSHSFTDIPANIVREF-- 800

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
            LQ++    +I    +  EK  +VLIV V++DL+D+ +  +L       + GG  G    
Sbjct: 801 TLQQQKPKTVIAFTAM--EKNKTVLIVKVSKDLVDKISTKEL----VSTVTGGVCGENAE 854

Query: 874 MAQSG 878
           + Q+G
Sbjct: 855 LTQTG 859


>gi|310766672|gb|ADP11622.1| Alanyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 876

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/906 (44%), Positives = 556/906 (61%), Gaps = 58/906 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F L
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA  +W+K  G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEALDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF  LI++  Q+TG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIKSVAQLTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+RGL LLD  L +L  D  L+G+  F+LYDT G P D+  D+   R L  
Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQSD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E+QR RAR  S G G      I         A++F GY  L+        
Sbjct: 420 IDEAGFERAMEQQRQRARDAS-GFGCDYNNVIHIDQ-----ASEFKGYQQLQ-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ + AI   G+  +   +G++  +V D TPFYAE+GGQ+GDTG
Sbjct: 466 ---------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     +++ QK A+ I  H   +  G LR    +   +D   R ++ +NHSATHL
Sbjct: 511 ELQGNSASFIVSNTQKYAQAI-GHSGKLATGELRVGDRVAAQVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS +    LRFD +H + +T  E++ +E+ VN  I +NLP+ T 
Sbjct: 570 LHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q+++L  ++  +K +  N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALEK 744

Query: 773 IHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++   LS   IA      +   +S+V+ K L++++D L+ ++ S II+L
Sbjct: 745 QLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ + K S++  VT+DL DR  A +L   L+ KV  GG GGGRP MAQ+GG +     
Sbjct: 805 ATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV--GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGV 892
            A+AGV
Sbjct: 862 AALAGV 867


>gi|317484483|ref|ZP_07943393.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6]
 gi|316924259|gb|EFV45435.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6]
          Length = 884

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/902 (44%), Positives = 535/902 (59%), Gaps = 40/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F+K+GH  + SSSLIP +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MLTANEIRHRFLEYFKKHGHTEVASSSLIPRDDPSLLFTNAGMVQFKKIFCGQEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  +T++  L
Sbjct: 61  ATTSQKCLRVGGKHNDLDNVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFITEDLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLYITVY +D+EAF+LW+K++G++ ++I R+   DNFWSM +TGPCGPCSEI FDQG
Sbjct: 121 PKDRLYITVYKDDDEAFELWQKVAGVAPERIFRLGEKDNFWSMGDTGPCGPCSEIHFDQG 180

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C P    G   + +R++EIWNLVFMQFEQ     R  LP+ SIDTGMGLER+A V 
Sbjct: 181 ADMACGPDCGIGKC-DCDRFLEIWNLVFMQFEQLADGSRVPLPRPSIDTGMGLERIAGVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NYD DLF+  I    ++ G++Y  N  N    RVI DH R+ +F+IADGILP+NE
Sbjct: 240 QGVRSNYDTDLFQVFINYMAELAGVRYRDNADNDTALRVIADHSRAIAFMIADGILPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RL+G  EP +      +   MG  YPEL      +    R E+
Sbjct: 300 GRGYVLRRLIRRAFRFGRLMGMQEPFLYKTALKVVEVMGEDYPELRARADFMARVTREEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF  TLD+GL +L+  +  L    ++I+ G+ AFKLYDT+G PLDI+ D+   RG    
Sbjct: 360 ERFSSTLDKGLSMLEEEMDALADKGEKIIPGETAFKLYDTYGFPLDIVNDVAEKRGFKA- 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+ + +Q+ RARA   G G       +  L E    ++F GY  L          
Sbjct: 419 DEAGFNEYMHQQKQRARAAWKGSGEKDIASRFQGLLEDGLKSEFFGYTAL---------- 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                        GV  +V  +   G  VE   SG    VV DQTPFY  +GGQ GDTG 
Sbjct: 469 ------------TGVGRVVALLDGDGLPVEALPSGSLGYVVTDQTPFYGASGGQCGDTGL 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D  K +  + VHH  V+ G L ++  +VLT+    R   + NH+ THLL
Sbjct: 517 LTAPAGSAKVLDTLKPSADLTVHHIEVDGGTLLSDQEVVLTVTESIRLDAARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +TPD LRFD +H  P+T  EL ++E +VN  I  + P+  ++
Sbjct: 577 HAALRRVLGDHVRQAGSLVTPDRLRFDFSHIAPMTPEELAAVERDVNAAIMADYPLTAKL 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M ++ AI  GA AL G KY D VRVV++   D    S  LCGGTH+ STG+     I+SE
Sbjct: 637 MGQQAAIDMGAMALFGEKYGDTVRVVTIGNPD-HTESVELCGGTHLHSTGQAGSFVILSE 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG RRIEA TG  A  H     E+L  LA+ LK   G +  +++ + +E R L+  
Sbjct: 696 SGIAAGTRRIEAATGWNALKHARAMSEELHQLAAMLKTQPGGLAAKLDGLQKENRGLRKD 755

Query: 774 HAK---RKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIML 827
             K   +       DL   K+ ++N +  + +++D+   K ++ +MD ++ K+ SG+  +
Sbjct: 756 LEKAAAQAASGQGGDL-MSKVVEINGVKVLAAKLDASNIKAMRELMDDIRSKMPSGVACI 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                E K S+++ V++DL  RF A  L +  A  +  G GGGRP  AQ+GG N    D+
Sbjct: 815 AAPVDEGKVSMILYVSKDLHGRFTAPALIKEVAAPI-AGSGGGRPDQAQAGGTNPAGIDE 873

Query: 888 AI 889
           A+
Sbjct: 874 AM 875


>gi|51244680|ref|YP_064564.1| alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|59798523|sp|Q6AQ16|SYA_DESPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50875717|emb|CAG35557.1| probable alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 882

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/910 (43%), Positives = 573/910 (62%), Gaps = 51/910 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR+ FLE+F+ NGH +  SSSL+P +DPTL+FTN+GMV FK +F G +K  Y    T 
Sbjct: 4   NEIRSRFLEYFKGNGHTVAESSSLVPKDDPTLLFTNAGMVQFKRVFMGDDKRGYVRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+ LT E  L   +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWNFLTVELGLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           ++++V+++D+EAF LW+K+  L   +I+R+   DNFW+M +TGPCGPCSEI  DQG    
Sbjct: 124 MWVSVFEDDDEAFALWEKVEDLPKGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGVGSS 183

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           P   P  +   + +R++E+WNLVFMQF +        LP+ SIDTGMGLER+A VLQ K 
Sbjct: 184 PCDNPNCAVGCDCDRFLELWNLVFMQFNRAEDGSLTALPRPSIDTGMGLERVAAVLQGKF 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NNYD DLF  +I   E ++G+KY    +     RVI DH R++SFL+ADG+LP+NEGRGY
Sbjct: 244 NNYDSDLFAPIIAVLEDISGVKYGAAADTDTAIRVIADHARATSFLVADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ Y + LG  +P M  +  A+C EM +AYP+L+    L+E+ + +E+ERF 
Sbjct: 304 VLRRIMRRAVRYGKKLGLEKPFMDRVTKAVCAEMQNAYPQLVATAALLEKVVNNEEERFR 363

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +TL+ GLV LD  +S L   G D +++G   FKLYDT G P DI++DI   RG+ G D  
Sbjct: 364 ETLEHGLVQLDEKISQLLTSGGDAVIDGPFIFKLYDTFGFPFDIVRDIALERGV-GFDEA 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ EQR+++RA   G G    ++   +L +     +F+GY+ L             
Sbjct: 423 GFATAMAEQRAKSRASRKGEGVKLHDEGVKALADAGKKAEFLGYEGLE------------ 470

Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+V+ ++ +QG  VE+ V+G+K  V    TPFYAEAGGQ+GD G   
Sbjct: 471 -----------ADSVVEGLLSEQGSGVEKLVAGEKGRVFVAATPFYAEAGGQMGDRGSVR 519

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G +  +   Q +  G+ +H  +VE G L   + + L +D + R+  + NHSATHLL  
Sbjct: 520 WQGGQASVYATQAEGTGLILHDLLVEEGELSLGLEVTLQVDDEERKATASNHSATHLLQA 579

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL ++LG HV Q+GS + P+ LRFD T+   +T+AE+  +E  VN+ I  N  + T +++
Sbjct: 580 ALISVLGDHVKQSGSLVGPERLRFDFTNFSQLTAAEIAQVETLVNEQIRNNAVIATDVLS 639

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +++AIA GA AL G KY+D VRVVS+     G +S  LCGGTHV +TGEI L  I+SES 
Sbjct: 640 KQEAIAGGATALFGEKYDDDVRVVSM-----GDYSRELCGGTHVGATGEIGLFVILSESG 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG+ A +++ G+      LA  L    G++V +VE +    ++ +   A
Sbjct: 695 IAAGVRRIEALTGRAALAYVQGRLSTGNELADLLSCKSGDLVPKVESLLTAVKEGEKRVA 754

Query: 776 KRKLQL---NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
           +   QL    ++DL  + +  V  +  +++EV   ++K L+ + D ++  ++SG I ++G
Sbjct: 755 QLAGQLASSGLDDLLNNALT-VAGIKVVVAEVPLENAKALRELGDKVRDNLESG-IAVIG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQ 887
            +   K ++L +VT+DL+DR  A    R+ ++V  + GG GGGRP MAQ+GG   +K  +
Sbjct: 813 GAVGGKVALLAIVTKDLVDRIQA---GRIVSEVSGIVGGKGGGRPDMAQAGGTMPDKLSE 869

Query: 888 AIAGVASFLK 897
           AIA V + ++
Sbjct: 870 AIASVPAIIE 879


>gi|330428621|gb|AEC19955.1| alanyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 873

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/908 (43%), Positives = 547/908 (60%), Gaps = 55/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FF+  GH+++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   T+ 
Sbjct: 4   SEIRQKFLSFFESKGHQVVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKETRPYSRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + L   +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQNAWELLTTVYQLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEIGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS EE G+RYIEIWNLVFMQFE+       +LPK  +DTGMGLER+A V
Sbjct: 184 DHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPLLPKPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P+NEG
Sbjct: 244 LQHVHSNYEIDLFQSLIKAAARETGISDLANNSL--KVIADHIRACSFLIVDGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG +      L+  L  EMG AYPEL+  +  IE+ L+ E+E
Sbjct: 302 RGYVLRRIVRRALRHGHKLGQSGVFFHRLVKDLVAEMGQAYPELVAQQARIEQVLKQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TL+ G+ +LD  L+ + +  +L+G   F LYDT+G P+D+  DI C      +D+ 
Sbjct: 362 RFSETLENGMKILDAALAAVPEKGMLDGQTLFTLYDTYGFPVDLTADI-CREREVQVDMD 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+  QR +ARA          E + +S  E    T+F GYD L+            
Sbjct: 421 GFEVAMNHQREQARAAG---KFKAAEGLSYSGVE----TRFDGYDQLQS----------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V A+   G  VE   +GQ+  VV D TPFYAE+GGQ+GD G    
Sbjct: 463 ------------QGTVTALYIDGTQVESVSAGQQAIVVLDATPFYAESGGQVGDAGILQA 510

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G R  + D QK    +F HH  +  G+L    ++   +D   R +   NHSATHL+H A
Sbjct: 511 NGARFAVADTQKIQNSVFGHHGEMLEGVLAVGDTVDAQVDKARRARTVRNHSATHLMHKA 570

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++M+ 
Sbjct: 571 LRQVLGSHVQQRGSLVDPDKTRFDFAHDAPMTADQIAQVERIVNAEVLNNHATQAQLMSY 630

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 631 DDAVQGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVARTGDIGLFKIVSEGGV 684

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AG+RR+EAITG  A + +   ++ L   A  LK    ++V RV  +  + + L+  L  
Sbjct: 685 AAGVRRVEAITGDNAVAWVQQINDTLVQAAGLLKTQPADLVERVALMQTQAKALERDLDR 744

Query: 775 AKRKLQLNV-EDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            K KL  +   DL+   I    D   +   +S VD K L+ ++D L+ K++S +++L  +
Sbjct: 745 LKSKLAASAGNDLASQAIVLRGDAKLLVASLSGVDPKALRGMIDQLKDKLKSAVVLLAAV 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K S+   VT DL  +  A DL  + A  + GG GGGRP MA  GG +      A A
Sbjct: 805 A-DDKISLAAGVTGDLASQVKAGDLVGMVAAQV-GGKGGGRPDMAMGGGTDVGALPAATA 862

Query: 891 GVASFLKK 898
           GV +++++
Sbjct: 863 GVEAWVRE 870


>gi|315635122|ref|ZP_07890400.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476084|gb|EFU66838.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 874

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/915 (43%), Positives = 569/915 (62%), Gaps = 62/915 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDDEAYNIWHKEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLANKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIDVMAEAGEEVKKQQATVEKF 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++ K+ +L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANV-KENVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A ID + F + +E QR RA++ S  G+   +  ++        G T+F GY         
Sbjct: 418 A-IDEVGFEREMELQRVRAQSASQFGMDYNSVIRV-------DGTTRFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + + L +             V A+  +G  VE   +GQ   V+ D TPFYAE+GGQ+G
Sbjct: 461 -TESETLAK-------------VTALFHEGNPVESISAGQSAVVILDNTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   G+G    + D QK  + +F H   + +G L    S+   +D   R+++S+NHSA
Sbjct: 507 DIGRLEGNGFCFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDDVRRQRISLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS ++   LRFD    + I+ A+L  +E  VN  +  N P+
Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDTLLRFDFAQHEAISKAQLAEVERIVNQQVRANNPI 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM  E A A GA AL G KY+++VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMELEAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    +V  ++  + ++Y+K
Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSAELLKSDVNSVTDKISLLQDKYKK 740

Query: 770 ----LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQS 822
               LQ +  K  LQ    DL+   + ++N +S I+ ++D   +K L++++D+L+ ++ S
Sbjct: 741 VEKELQTLKEKAALQAG-NDLAKSAV-EINGVSVIVQQLDGIEAKSLRAMVDSLKNQLGS 798

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++    + ++K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG   
Sbjct: 799 AVVVFAS-ALDEKVNLIVGVTQDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTEP 856

Query: 883 NKADQAIAGVASFLK 897
              ++A++  + +LK
Sbjct: 857 QNINKALSVCSDWLK 871


>gi|91792571|ref|YP_562222.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|122968878|sp|Q12PX7|SYA_SHEDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91714573|gb|ABE54499.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 874

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/908 (42%), Positives = 556/908 (61%), Gaps = 58/908 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R+ FL +F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y    +
Sbjct: 5   TAKLRSAFLAYFETQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRSYSRAVS 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L   
Sbjct: 65  SQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFAWTFLTETLKLPTE 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           RL +T+Y+ D+EAF+LW K  G++A+ IIRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 125 RLCVTIYETDDEAFELWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCSEIF 184

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q       LPK S+DTGMG+ER+A 
Sbjct: 185 YDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGAMLPLPKPSVDTGMGIERIAA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           ++Q   +NY+ID+FK LI  + ++ G+    N  +  RVI DH+RS +FLIADG++P+NE
Sbjct: 245 IMQGVHSNYEIDIFKQLIAKTAEIIGVSDLENKSL--RVIADHIRSCAFLIADGVMPSNE 302

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG T+     L+P L + MG A   L++ ++++E+ L++E+
Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLISVMGDAAKGLVETQVIVEKALKAEE 362

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E+F +TL+RGL LLD  L+ L   ++L+GD AFKLYDT+G P+D+  D+   R +  +D 
Sbjct: 363 EQFARTLERGLGLLDNALNEL-SGKVLDGDTAFKLYDTYGFPVDLTADVCRERDIT-VDE 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+ EQRSRA+A     G+   +++    +     TQF GY  L G          
Sbjct: 421 AGFEAAMAEQRSRAQAAG-NFGADYNKQLIIDEE-----TQFCGYKGLSG---------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+   G+ V E   GQ   VV + TPFYAE+GGQ+GD G   
Sbjct: 465 -------------EANVVALYLDGQAVNEVTQGQDAVVVLNNTPFYAESGGQVGDKGVLS 511

Query: 536 GDGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             GI   +TD QK  +A G   H   V  G ++    L   ++   R++  +NHS THLL
Sbjct: 512 AQGINFSVTDTQKFGQATG---HQGKVLEGSIKVGTKLAAEVNKDLRQRTELNHSVTHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV+Q GS + P+ LRFD  H + + +AELK +E+ VN  I  N  + T  
Sbjct: 569 HAALRQVIGTHVTQKGSLVNPERLRFDFAHFEGVKAAELKQVEELVNAQIRCNHELNTAE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A   GA AL G KY+++VRVV++     G  S  LCGGTHV  TG+I L  I SE
Sbjct: 629 MAIDEAKEKGAMALFGEKYDEKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           + I AG+RRIEA+TG  A +++  Q   L   A  LK    +VV +++   ++ ++L  +
Sbjct: 684 AGIAAGVRRIEAVTGAAAMAYVAEQQAMLDEAAGLLKSDSASVVAKLKAQLDKTKQLEKE 743

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL             D+N +  ++ +   VD   L+ + D L++K++S II+L 
Sbjct: 744 LSQLKDKLAAAASADMAGDAQDINGVKVLVKKLEGVDPGSLRGLQDELKQKLKSAIILL- 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G +K+ K +++  V+ DL  +  A +L  + A+ + GG GGGRP MAQ+GG      D A
Sbjct: 803 GTAKDGKVNLIAGVSNDLTAKVKAGELVAMVAQQV-GGKGGGRPDMAQAGGTQVENLDAA 861

Query: 889 IAGVASFL 896
           +A  ++++
Sbjct: 862 LASASTWI 869


>gi|288940831|ref|YP_003443071.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896203|gb|ADC62039.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 867

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/893 (44%), Positives = 543/893 (60%), Gaps = 48/893 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + +R +FL++F++  HE + SS LIP NDPTL+FTN+GMV FK+ F G+E+     
Sbjct: 1   MTTSAELRASFLDYFEQRQHERVASSPLIPANDPTLLFTNAGMVQFKDAFLGRERRASNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT+   L
Sbjct: 61  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWDYLTRVLAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL++TV++ED+EA  +W K  G+   +  R    DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 PPERLWVTVFEEDDEAAGIWLKEIGVDPQRFSRCGAKDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+RY+EIWNLVFMQF +        LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PAIPGGPPGSPDEDGDRYVEIWNLVFMQFNRDADGNMTPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+HLI+A+ Q TG     +  +  RVI DH+RS++FLI DG+ P NEGRGY
Sbjct: 241 VHSNYEIDLFRHLIEAAAQATGCTDLADKSL--RVIADHIRSTAFLITDGVTPGNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +   LG + P    L+  L  EMG AYPEL  ++  +E  ++ E+ERF 
Sbjct: 299 VLRRIMRRAIRHGYRLGCSTPFFHTLVEPLAREMGDAYPELRASQSHVERLVKLEEERFA 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ LLD  ++ L  D+I  G+  FKLYDT+G P+D+  DI   RGL  +D+  F 
Sbjct: 359 ETLEHGMRLLDEAIADLSGDQI-PGETVFKLYDTYGFPVDLTADIARERGLT-LDVAGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E Q+ RARA S   GS  T  I        G T F GYD ++               
Sbjct: 417 QAMERQKERARAASQ-FGSAQTLDIQIQ-----GETDFCGYDRVQ--------------- 455

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+ + GE  +   +G++  V+ D++PFY E+GGQ+GD G    +  
Sbjct: 456 --------EEATIVALYRGGESCDALEAGEEGLVILDRSPFYGESGGQVGDRGWLNTETA 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  + D QKK +G+ VH   VE G L     +   +D   RR  ++NHSATHLLH AL  
Sbjct: 508 RFGVQDTQKKGDGVLVHVGRVEEGALTVGDRVDARVDADRRRATALNHSATHLLHAALRE 567

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS + P+ LRFD +H +P++  +L +IE  VN  +  N  V TRIM+ EDA
Sbjct: 568 VLGPHVQQKGSLVGPERLRFDFSHFEPVSREQLLTIERMVNREVRANHLVETRIMSLEDA 627

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            ASGA AL G KY D+VRV+ +     G  S+ LCGGTHV + G+I L+ IVSE+ I AG
Sbjct: 628 KASGAMALFGEKYADQVRVLRM-----GEFSTELCGGTHVKAVGDIGLIKIVSETGIAAG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           +RRIEAITG  A   +   +E+L  LA  LK  + +V  RV ++ +  R+L  ++   K 
Sbjct: 683 VRRIEAITGASALEWVEADEERLLRLAGLLKGGREDVDERVTQLIDRARRLEKEIEQLKA 742

Query: 778 KLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K   +  +DL+     I  +  ++  +   D K L+  +D L+ K+ S +++L     + 
Sbjct: 743 KAASSAGQDLAAQAIDIQGIKTLAARLDGADPKSLRVTLDQLKDKLGSAVVVLA-TESDG 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG--PNGNKA 885
           K S++  VT+DL DR  A DL R  A+ + GG GGGRP MAQ+GG  P G  A
Sbjct: 802 KVSLVAGVTKDLTDRLKAGDLIREVAEKV-GGKGGGRPDMAQAGGNDPAGLPA 853


>gi|116689431|ref|YP_835054.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|116647520|gb|ABK08161.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
          Length = 897

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 546/910 (60%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 26  AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 85

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 86  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 145

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 146 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 205

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 206 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 265

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 266 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 323

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 324 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 383

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 384 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 442

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 443 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 490

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 491 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 533

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+
Sbjct: 534 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 593

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 594 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 653

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV E
Sbjct: 654 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 707

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L  +
Sbjct: 708 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 767

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   +A V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 768 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 827

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 828 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 885

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 886 LAGVKGWVEE 895


>gi|311278355|ref|YP_003940586.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308747550|gb|ADO47302.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 875

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/894 (44%), Positives = 559/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT +  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKYAWELLTGDNWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVEVMGSAGDDLKRQQAQVEQILK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V    +GQ   V+ DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFVDGKAVNSINAGQDAVVILDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFGFAVSDTQKYGQAIG-HLGKLSNGSLKVGDAVQADVDEVRRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NLPV T 
Sbjct: 570 MHAALRDVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLPVETH 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  EDA A GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  I S
Sbjct: 630 VMELEDAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  + + L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAESDLLSDVAQLLKGDSHNLADKVRTVLERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  ++N +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQAAAQESASLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|254245667|ref|ZP_04938988.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184]
 gi|124870443|gb|EAY62159.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184]
          Length = 897

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/911 (42%), Positives = 544/911 (59%), Gaps = 55/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   T
Sbjct: 25  KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRAT 84

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L +
Sbjct: 85  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPK 144

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EI
Sbjct: 145 DKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEI 204

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A
Sbjct: 205 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLA 264

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 265 AVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGN 322

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 323 EGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQE 382

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 383 EERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT- 441

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 442 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDD 489

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 490 AKVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQG 532

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL
Sbjct: 533 VLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHL 592

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R
Sbjct: 593 MHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIVR 652

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 653 VMPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVV 706

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L  
Sbjct: 707 EGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEK 766

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +   I  V  ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 767 ELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 826

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 827 AAVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPG 884

Query: 888 AIAGVASFLKK 898
           A+AGV  ++++
Sbjct: 885 ALAGVKGWVEE 895


>gi|325529341|gb|EGD06275.1| alanyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 874

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKDVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT      NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTETSDLNNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHQLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  D  RFD  H+ P++  E++ +E  VND I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLSDDEIRRVEQIVNDEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVME 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LSALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|261342139|ref|ZP_05969997.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288315472|gb|EFC54410.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 875

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/894 (44%), Positives = 566/894 (63%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF  LI+A  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDDELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYDAL--------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     +LT  V+    A+   G+ V+   +GQ+  V+ D+TPFYAE+GGQ+GD G
Sbjct: 465 ----------ELTGNVT----ALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G    ++D QK  + I  H   +  G L+    +   +D   R ++ +NHSATHL
Sbjct: 511 ELKGNGFSFSVSDTQKYGQAIG-HQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 630 IMDLEAAKNKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEAAIASLHAQSDQLHDIAQLLKGDSQNLGEKVRVALDRTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+  +  ++SE   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQAAAQESASLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|170732737|ref|YP_001764684.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|205830047|sp|B1K026|SYA_BURCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169815979|gb|ACA90562.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 874

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   I  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|205830048|sp|A0K6N4|SYA_BURCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   +A V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|134295482|ref|YP_001119217.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|205830008|sp|A4JDM9|SYA_BURVG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134138639|gb|ABO54382.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 874

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYTRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L +
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGPC+EI
Sbjct: 122 DKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++LI+A+ +VT      NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQNLIKAAARVTETADLNNNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARAAG-------KFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGSSVGEVKAGQDAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL
Sbjct: 510 VLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R
Sbjct: 570 MHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 630 VMPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVQRTGDIGLFKIVV 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +  +V     ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVFVLAATLDGADAKTLRETVDKLKYKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 804 AAVEG-GKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPG 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWIE 871


>gi|212634216|ref|YP_002310741.1| alanyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|212555700|gb|ACJ28154.1| Alanyl-tRNA synthetase [Shewanella piezotolerans WP3]
          Length = 874

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/893 (43%), Positives = 559/893 (62%), Gaps = 62/893 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T+
Sbjct: 5   TAALRSAFLEYFRTNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRNYTRATS 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LTKE  L + 
Sbjct: 65  SQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNFLTKELKLPKE 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           RL +T+Y+ D EA+ +W K  G++ + IIRI  N       DNFW M +TGPCGPC+EIF
Sbjct: 125 RLCVTIYETDNEAYDIWSKKVGVAPENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEIF 184

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+      LPK S+DTGMG+ER+A 
Sbjct: 185 YDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGAMNPLPKPSVDTGMGIERIAA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           ++Q   +NY+ID+F+ LI+ + ++ G+    N  +  RVI DH+RS +FLIADG++P+NE
Sbjct: 245 IMQGVHSNYEIDIFQALIKKTAEILGVTDLENKSL--RVISDHIRSCAFLIADGVMPSNE 302

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG T      L+P L   MG A   L+  + ++E++L++E+
Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAEE 362

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E+F +TL+RGL +LD  LS L K ++L+G+ AFKLYDT+G P+D+  D+   R +  +D 
Sbjct: 363 EQFARTLERGLGILDNALSGL-KGDVLDGETAFKLYDTYGFPVDLTADVCRERDIT-VDE 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLRGSKFMKED 472
             F  A+ EQRSRA+A      +G  E  +     + E+ G   F+GY            
Sbjct: 421 AGFKTAMAEQRSRAQA------AGQFETDYNEGLKIDEQSG---FVGYQ----------- 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     +L N   + V AI + GE V+    G +  +V + TPFY E+GGQ GD G
Sbjct: 461 ----------ELNN--QATVTAIYKAGEPVDALNVGDEAVIVLNNTPFYGESGGQCGDKG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + DGI  Q+ D QK  + I  H   +  G +    S+   +D + R +  +NHS THL
Sbjct: 509 VLLADGIEYQVADTQKYGQAIG-HIGKLAEGSIVVGQSIATNVDKKLRHRTELNHSVTHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS + P+ LRFD +H + + ++ELK +E+ VN  I +N  +   
Sbjct: 568 LHAALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKASELKEVEELVNTQIRRNHELKAE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I S
Sbjct: 628 VMDIEQAKEKGAMALFGEKYDAEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  I AGIRRIEA+TG  A +++  Q   L+  A+ LK    +V+ +++   ++ + L  
Sbjct: 683 EGGIAAGIRRIEAVTGAAAMAYVAKQQASLEEAAALLKGDSASVITKLKAQLDKSKALEK 742

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL          +  +VN +  ++ +   VD+  L+ + D L++K++SGI++L
Sbjct: 743 ELAQLKDKLAAATSADLAGEAVEVNGIKVLVKQLEGVDAGSLRGLQDELKQKLKSGIVVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGG 879
            GI+ + K +++  VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG
Sbjct: 803 -GIAGDAKVNLIAGVTKDLTGKVKAGELVASIAVQV--GGKGGGRPDMAQAGG 852


>gi|73540553|ref|YP_295073.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|83305858|sp|Q474F4|SYA_RALEJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72117966|gb|AAZ60229.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134]
          Length = 874

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/910 (44%), Positives = 540/910 (59%), Gaps = 59/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   T+
Sbjct: 3   VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L   
Sbjct: 63  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++I+RI  N       DNFW MA+TGPCGPCSEIF
Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSRYASDNFWQMADTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           FD G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 FDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF+ LI+A+ + T +     N +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL  A+  + E L++E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKAEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ERF +T++ G+ +LD  L+ L    GK   L+G++AFKL+DT G PLD+ QD+ C     
Sbjct: 361 ERFFETIENGMSILDAALADLKLKGGK--TLDGELAFKLHDTFGFPLDLTQDV-CREQEI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA           K+   L+     T F GY+ L        
Sbjct: 418 AVDEAAFDAAMNRQREQARA-------AGKFKMAAGLEYSGDKTVFHGYEKLE------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
               L Q   I           A+   G  V+    GQ   +V D TPFYAE+GGQ GD 
Sbjct: 464 ----LPQAKII-----------ALYVDGAAVDAMQPGQTGVIVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D  K    +F H   +E G L+   ++   +D   R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +ED VN  I +N     
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            E  + AGIRR+EAITG  A  +L   D KL   A+ LK     +V R+ ++ E+ R L 
Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAALKAQPSELVPRIGQVQEQVRALE 742

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
            +L   K KL  +  D    +  DV  +  + +++   D K L+  MD L+ K+QS  I+
Sbjct: 743 KELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860

Query: 887 QAIAGVASFL 896
           QA++GV  ++
Sbjct: 861 QALSGVVEWV 870


>gi|312795632|ref|YP_004028554.1| Alanyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167407|emb|CBW74410.1| Alanyl-tRNA synthetase (EC 6.1.1.7) [Burkholderia rhizoxinica HKI
           454]
          Length = 893

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 549/910 (60%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +   Y   T
Sbjct: 21  KAAEIREKFLRFFESKGHTIVRSSSLVPANDPTLLFTNSGMVQFKDVFLGADTRPYSRAT 80

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L  
Sbjct: 81  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTRVYQLPP 140

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY ED+EA+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 141 EKLTVTVYHEDDEAYDIWANEIGVPLERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 200

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS+ EEG+R+IEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 201 FYDHGPQVWGGPPGSADEEGDRFIEIWNLVFMQFNRDAQGNLTPLPKQCVDTGMGLERLA 260

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI A+ + TG+    +N +  +VI DH+R+  FLI DG++P N
Sbjct: 261 AVLQHVHSNYEIDLFQRLIAAAARETGVLDLAHNSL--KVIADHIRACGFLIVDGVIPGN 318

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL  A+  + + LR E
Sbjct: 319 EGRGYVLRRIVRRAIRHGYKLGRKSPFFHRLVEDLVGEMGAAYPELKVAQQRVTDVLRQE 378

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +LD  LS L     ++L+G++AFKL+DT+G PLD+  D+   RG+ G
Sbjct: 379 EERFFETIEHGMSILDAALSELTARGAKVLDGELAFKLHDTYGFPLDLTADVCRERGI-G 437

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D ++F++A+  QR +ARA      +G    +  +L      T F GYD     K + +D
Sbjct: 438 VDEVAFDEAMARQREQARA------AGKFRMVQ-TLDYTGSKTTFHGYD-----KHVFDD 485

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V    +GQ+  VV DQTPFYAE+GGQ+GD G
Sbjct: 486 AKVV-----------------AVYVDGTAVPSLRAGQQGVVVLDQTPFYAESGGQVGDQG 528

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                 +R  + D  K    +  HH  +E+G L+    +   +D + R + + NHSATHL
Sbjct: 529 TIGNATVRFAVFDTLKVQADVVGHHGTLEQGELKVGDVVSARVDAERRARTARNHSATHL 588

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV Q GS + PD  RFD +H  P++  E++ +E  VN  +  N P + R
Sbjct: 589 MHKALREVLGPHVQQKGSLVDPDKTRFDFSHHAPLSDDEIRRVEAIVNAEVLANTPGLAR 648

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+ SGA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 649 VMPFDDAVKSGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVQRTGDIGLFKIVF 702

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   +  L   A+ LKV    +  R+ ++ +++R L  
Sbjct: 703 EGGVAAGIRRVEAITGDNAVRYVQDLESTLAGAAAALKVQPAELAPRIAQVQDQFRALEK 762

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D    +   +A V+ ++  +   D K L+  +D L+ K++   I+L
Sbjct: 763 ELAQLKSKIASSQGDELVSQAVDVAGVHVLAAQLEGADVKTLRETVDKLKDKLKHAAIVL 822

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG + +K   
Sbjct: 823 ASVDG-GKVSLIAGVTTDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPSKLPA 880

Query: 888 AIAGVASFLK 897
           A++GV  +++
Sbjct: 881 ALSGVKEWIQ 890


>gi|157374457|ref|YP_001473057.1| alanine--tRNA ligase [Shewanella sediminis HAW-EB3]
 gi|205830208|sp|A8FSV6|SYA_SHESH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157316831|gb|ABV35929.1| Alanine--tRNA ligase [Shewanella sediminis HAW-EB3]
          Length = 874

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 559/908 (61%), Gaps = 56/908 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWNFLTQELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EA+ +W K  G+ A+ +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAYDIWTKEIGVPAENLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+  E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +    N  +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILSVTDLENKSL--RVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG ++     L+P L   MG A   L+  + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGASDSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L K ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNAL-KGDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G  E  +    +    T F GY  L           
Sbjct: 420 EAGFEVAMAEQRSRAQA------AGQFETDYNDSLKIDELTHFSGYTEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                 P  +T        AI   GE V    +G +  +V D TPFY E+GGQ GD G  
Sbjct: 463 ----TAPGKIT--------AIYMAGESVNSLSAGDEAVIVLDSTPFYGESGGQCGDRGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              GI   + D QK  + +  H   +  G L    SL   +D + R +  +NHS THLLH
Sbjct: 511 SAKGIEFDVKDTQKYGQAVG-HQGALTSGTLSVGDSLEANVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS +  + LRFD +H + +   ELK++ED VN  I +N  +   +M
Sbjct: 570 AALRQLLGTHVTQKGSLVDSERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DMDQAKEKGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            I AG+RRIEA+TG  A +++ GQ  +L   A+ LK    +VV +++   +  + L  +L
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAGQKAELDQAAALLKADSASVVSKLKAQLDRTKLLEKEL 744

Query: 773 IHAKRKLQLNVE-DLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL+    ++  VN +   +  V++  L+ + D L++K+ SGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQQVNGVNVLVKKLDGVEAGALRGLQDELKQKLGSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I+ + K ++++ VT+DL  +  A +L A ++++V  GG GGGRP MAQ+GG      D A
Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVASIASQV--GGKGGGRPDMAQAGGSQPENLDSA 861

Query: 889 IAGVASFL 896
           +  V  +L
Sbjct: 862 LEQVIPWL 869


>gi|153829905|ref|ZP_01982572.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|148874593|gb|EDL72728.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39]
          Length = 860

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|332035475|gb|EGI71972.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 866

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/904 (45%), Positives = 560/904 (61%), Gaps = 56/904 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   T
Sbjct: 5   TTAQIRQQFLDFFASKQHQIVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L Q
Sbjct: 65  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLPQ 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +T+Y +DEEAF+ W K  GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 EKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 184

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG+ EE G+R+IEIWNLVFMQ+ +Q+      LPK S+DTGMGLER++ +LQ   
Sbjct: 185 IWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMLPLPKQSVDTGMGLERISAILQGVH 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF+ LI A+  VT  +   +  +  RV+ DH+RS +FLI+DG++P+NEGRGYVL
Sbjct: 245 SNYEIDLFQGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVL 302

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGKT
Sbjct: 303 RRIIRRAVRHGNKLGAQGSFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKT 362

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL +L+  LS L K +I+ GD+ FKLYDT+G P D+  D+   R +  ID   F + 
Sbjct: 363 LERGLAILEESLSDL-KGDIIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEEC 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  QR  A+  +   G+   E++     EK   T+F GYD                    
Sbjct: 421 MAVQRKTAQ-QAGKFGADYNEQL---KSEKL--TEFKGYD-------------------- 454

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
              +   S+ V  I   GE V+    GQ+  VV D+TPFYAE+GGQ GDTG     G   
Sbjct: 455 ---STHHSATVVEIFAGGEAVQLLEDGQQGIVVLDRTPFYAESGGQTGDTGTITVAGGEF 511

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +T+  K     F HH IV+ G +     +  TID   R  +  NH+ATH+LH AL  +L
Sbjct: 512 NVTNTTKLGNA-FAHHGIVQ-GRIGVNDKVDATIDNARRDSIKKNHTATHILHEALRQLL 569

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS + PD LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA A
Sbjct: 570 GDHVGQKGSLVQPDRLRFDFSHFEAVTKDELREIERVVNDEIRRNFALNTELMAIDDAKA 629

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+R
Sbjct: 630 KGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVR 684

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+    K+  QL
Sbjct: 685 RIEAVTGADAVAYVSEQEQQLHDVAALVKGDSASVLEKVTALLEKSKGLE----KQIAQL 740

Query: 782 NVEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832
           N +  S         I ++N +  +++ V   +SK L+ ++D L+ KI SG+I L G++ 
Sbjct: 741 NDKLASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVAS 799

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K S++  VT+DL  +  A +L    A  + GG GGGRP MAQ+GG        A+  V
Sbjct: 800 GDKVSLIAGVTKDLTGKVKAGELVNHMAGQV-GGKGGGRPDMAQAGGSEPQNLAAALDSV 858

Query: 893 ASFL 896
            ++L
Sbjct: 859 TAWL 862


>gi|206578751|ref|YP_002236967.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|206567809|gb|ACI09585.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 875

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI +  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATHL
Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  ++N +  ++SE   V+ K L++++D L+ ++ S +++L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|107022482|ref|YP_620809.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|105892671|gb|ABF75836.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
          Length = 897

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 26  AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 85

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 86  AQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 145

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 146 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 205

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 206 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 265

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 266 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 323

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 324 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 383

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 384 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 442

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 443 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 490

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 491 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 533

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+
Sbjct: 534 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 593

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 594 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 653

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV E
Sbjct: 654 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 707

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L  +
Sbjct: 708 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 767

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   +A V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 768 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 827

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 828 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 885

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 886 LAGVKGWVEE 895


>gi|262043942|ref|ZP_06017027.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259038706|gb|EEW39892.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 875

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGNMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI +  +VTG     N  +  RVI DH+RS +FL+ADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATHL
Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  ++N +  ++SE   V+ K L++++D L+ ++ S I++L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|295097277|emb|CBK86367.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 875

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/909 (44%), Positives = 572/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF  LI+A  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDDELAKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GY+ L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYEEL--------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++S V A+   G+ V+   +GQ+  V+ D+TPFYAE+GGQ+GD G
Sbjct: 465 --------------ALTSNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G    ++D QK  + I  H   +  G L+    +   +D   R ++ +NHSATHL
Sbjct: 511 ELKGNGFSFSVSDTQKYGQAIG-HQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIETH 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IVS
Sbjct: 630 IMDLEAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAQSDQLHEIAQLLKGDSQNLGEKVRVALDRTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+  +  ++S+   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPA 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|15640567|ref|NP_230196.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590679|ref|ZP_01678012.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121728567|ref|ZP_01681589.1| alanyl-tRNA synthetase [Vibrio cholerae V52]
 gi|153819108|ref|ZP_01971775.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153823946|ref|ZP_01976613.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227080728|ref|YP_002809279.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229507157|ref|ZP_04396663.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229508981|ref|ZP_04398469.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229519648|ref|ZP_04409091.1| alanyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229606165|ref|YP_002876813.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254850784|ref|ZP_05240134.1| alanyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744228|ref|ZP_05418181.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|12644031|sp|Q56648|SYA_VIBCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|9654973|gb|AAF93713.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547465|gb|EAX57573.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121629179|gb|EAX61620.1| alanyl-tRNA synthetase [Vibrio cholerae V52]
 gi|126510340|gb|EAZ72934.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126518530|gb|EAZ75753.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227008616|gb|ACP04828.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229344337|gb|EEO09312.1| alanyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229353906|gb|EEO18840.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229355902|gb|EEO20822.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229368820|gb|ACQ59243.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254846489|gb|EET24903.1| alanyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255738168|gb|EET93560.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101]
          Length = 860

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|329999040|ref|ZP_08303295.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|328538480|gb|EGF64595.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 875

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI +  +VTG     N  +  RVI DH+RS +FL+ADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATHL
Sbjct: 511 ELKGVGFSFAVSDTQKYGQAIG-HIGKVASGTLKVGDAVQADVDEARRQRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  ++N +  ++SE   V+ K L++++D L+ ++ S I++L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|238896148|ref|YP_002920884.1| alanyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548466|dbj|BAH64817.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 875

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI +  +VTG     N  +  RVI DH+RS +FL+ADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATHL
Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  ++N +  ++SE   V+ K L++++D L+ ++ S I++L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|229512814|ref|ZP_04402281.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229350063|gb|EEO15016.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21]
          Length = 860

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 550/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGSEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T+  +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATDDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|301155669|emb|CBW15137.1| alanyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 874

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/913 (43%), Positives = 559/913 (61%), Gaps = 60/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRQADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI  + +V G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A ID   F + +E QR RA++ S  G+      ++        G T+F GY         
Sbjct: 418 A-IDEAGFEREMEAQRLRAQSASQFGMDYNNVIRV-------EGETKFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + + L +             V A+   G+ V+   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 461 -TESESLAK-------------VTALFHDGKSVDSITAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     GI+  + D QK  + +F H   +E+G L+   ++   +D   R Q S+NHSA
Sbjct: 507 DSGYLTSQGIQFNVKDTQKYGQ-VFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  + +N  V
Sbjct: 566 THLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T +M+ E A A GA AL G KY+D VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDVMDIEAAKAKGAMALFGEKYSDVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+E+++ AG+RRIEA+TG+ A + L  Q   L   A   K     +V +++++ ++ +K
Sbjct: 681 IVAETAVAAGVRRIEAVTGENAINWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K  +Q    DL  S  KI DV+ + H +  +++K L+ ++D L+ ++ SG
Sbjct: 741 AEKELQGLKEKAAMQAG-SDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSG 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+   I  + K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG    
Sbjct: 800 VIVFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPE 857

Query: 884 KADQAIAGVASFL 896
             + A+    ++L
Sbjct: 858 NVNLALTVAQNWL 870


>gi|300722254|ref|YP_003711538.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297628755|emb|CBJ89333.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 875

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/909 (43%), Positives = 561/909 (61%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQVVPSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRPYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEKWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYDIWHKEVGVPTERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF+ LI +   VTG     N  +  RV+ DH+R+ +FLI DG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFQSLIASVADVTGATDLTNKSL--RVVADHIRACAFLICDGVVP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL Q + L+E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIKIMGAAGEELKQQQALVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLQLLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+E QR RAR  S G G+   E I        G++ F GY+           
Sbjct: 420 VDEAGFEMAMENQRRRARESS-GFGTDYNELIKVD-----GSSDFCGYE----------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   +IV AI + GE VE+  +G++  V+ D+T FYAE+GGQ GD G
Sbjct: 463 ------------HNSQQAIVTAIFRNGESVEQIHAGEEAVVILDKTAFYAESGGQAGDMG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +      ++ D QK A+ +  H   +  GIL    ++   ID   R  + +NHSATHL
Sbjct: 511 HLLNSDGVFEVLDTQKYAQ-VIGHIGKLTSGILAVNHTVNAEIDVVRRDAIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG HV+Q GS +    LRFD +H + + S +++ +E+ VN+ I +N PVVT 
Sbjct: 570 LHAALRQILGEHVAQKGSLVNDKYLRFDFSHFEAMKSEQIRQVENLVNEEIRKNSPVVTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  EDA + GA AL G KY+++VRV+S+     G  S+ LCGGTH S TG+I +  I S
Sbjct: 630 LMALEDAKSKGAMALFGEKYDEKVRVLSM-----GGFSTELCGGTHASRTGDIGVFRISS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEAITGQ A   +  Q + L+ +A  +K    ++  +V+   +  ++L+ 
Sbjct: 685 ESGTAAGIRRIEAITGQTALDAIYQQTDLLQDIAHLVKGDISSLNEKVKTTLDRMKQLEK 744

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S       +I  V  +   + +V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K S+++ +T+DL  +  A DL    A+ + GG GGGRP +AQ+GG +      
Sbjct: 805 STVAGD-KVSLIVGITKDLTAKIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVTALPT 862

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 863 ALASVEEWV 871


>gi|157961024|ref|YP_001501058.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|205830206|sp|A8H1T6|SYA_SHEPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157846024|gb|ABV86523.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 875

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/912 (43%), Positives = 566/912 (62%), Gaps = 63/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW  LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+YD D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYDTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ +  + G+    N  +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAAILGVTDLENKSL--RVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETLRS 353
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG+ A   L + + ++E++L++
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGADAAKGLQETQAIVEKSLKA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TL+RGL +LD  L+ L  + +L+G+ AFKLYDT+G P+D+  D+   R +  +
Sbjct: 362 EEEQFARTLERGLGILDAALNELATN-VLDGETAFKLYDTYGFPVDLTADVCRERDIT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLRGSKFMK 470
           D   F  A+  QRSRA+A      +G  E  +     + E+ G   F GY          
Sbjct: 420 DEAGFEVAMAAQRSRAQA------AGQFETDYNEGLIIDEQSG---FTGY---------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                       DL N   + V AI + GE V+  V+G  V +V D TPFY E+GGQ GD
Sbjct: 461 -----------TDLNN--QATVTAIFKAGESVDSIVAGDDVVIVLDNTPFYGESGGQCGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G  I DGI   +TD QK  + I  H   V  G ++    +   +D + R +  +NHS T
Sbjct: 508 EGVLIADGIEFTVTDTQKYGQAIG-HIGRVATGTVKVGQVVTANVDKKLRHRTELNHSVT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  + 
Sbjct: 567 HLLHAALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAHELKEVEELVNTQIRRNHELT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +M+ E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I
Sbjct: 627 AEVMDIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ + L
Sbjct: 682 TSEGGIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAAALLKGDSASVVAKLKAQLDKTKLL 741

Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825
             +L   K KL          +  DVN +  ++ +   VD+  L+ + D L++K+QSGI+
Sbjct: 742 EKELSQLKDKLAAATSADLAGEAVDVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  I+ E K ++++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG     
Sbjct: 802 VLA-IAGEDKVNMIVGVTKDLTGKVKAGELVASIAVQV--GGKGGGRPDMAQAGGSQPEN 858

Query: 885 ADQAIAGVASFL 896
            D A+  V  ++
Sbjct: 859 LDAALEQVIPWI 870


>gi|147675089|ref|YP_001216045.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229520840|ref|ZP_04410262.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262169855|ref|ZP_06037545.1| alanyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|205830284|sp|A5F9B7|SYA_VIBC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146316972|gb|ABQ21511.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227012371|gb|ACP08581.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229342073|gb|EEO07069.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262021589|gb|EEY40300.1| alanyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 860

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|205830050|sp|Q1BX19|SYA_BURCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   +A V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|152971551|ref|YP_001336660.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|205830073|sp|A6TCV9|SYA_KLEP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150956400|gb|ABR78430.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 875

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/894 (44%), Positives = 561/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI +  +VTG     N  +  RVI DH+RS +FL+ADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   V  G L+   ++   +D   R ++ +NHSATHL
Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRHRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  ++N +  ++SE   V+ K L++++D L+ ++ S I++L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|269140202|ref|YP_003296903.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267985863|gb|ACY85692.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304560033|gb|ADM42697.1| Alanyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 875

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/909 (43%), Positives = 570/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYESDDEAYDIWANEVGVPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI  + +V G+    +  +  RVI DH+RS +FL++DG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAETARVIGVSDLSSKSL--RVIADHIRSCAFLVSDGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA   L Q + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGSAADALAQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G PLD+  D+   RGL  
Sbjct: 362 TEEEQFARTLERGLTLLDDELSTLDGD-TLDGETAFRLYDTYGFPLDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR RAR  S G G+      + S+    G+T F GY L       ++D
Sbjct: 420 VDEEGFERAMEAQRRRARESS-GFGAD-----YNSMIRVDGSTDFTGYHL------QQQD 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            ++V A+   G+ V+   +G++  VV  QTPFYAE+GGQ+GD G
Sbjct: 468 -----------------ALVTALFHNGQAVDALQAGEEGVVVLAQTPFYAESGGQVGDRG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G R  + D QK  + I  H   V +G LR    +  +ID   R ++  +HSATHL
Sbjct: 511 ELTAQGCRFVVEDTQKYGQAIG-HLGKVAQGSLRVGERVQASIDGARRERIRQSHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL ++LG HV+Q GS ++   LRFD +H++ +   +++ +ED VN  I +NLP+ T+
Sbjct: 570 MHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPQQIRQVEDIVNAQIRRNLPIDTQ 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IVS
Sbjct: 630 EMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  +VN +  ++S++D  E   L++++D L+ ++ S I++L
Sbjct: 745 ALQQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMGSCIVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              ++  K S++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     Q
Sbjct: 805 A-TAEAGKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPQ 862

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 863 ALASVTDWV 871


>gi|118581577|ref|YP_902827.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|205830173|sp|A1ATU9|SYA_PELPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118504287|gb|ABL00770.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 878

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/886 (43%), Positives = 541/886 (61%), Gaps = 42/886 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FF + GH ++PSS +IP NDPTLMF N+GM  FK+ F G EK  Y    + 
Sbjct: 4   SEIRRRFLTFFAERGHTIVPSSGIIPKNDPTLMFANAGMNQFKDCFLGMEKRDYTRACSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT++  LD+ R
Sbjct: 64  QKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTRDLKLDKNR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY++VY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPCSEIF+DQGE   
Sbjct: 124 LYVSVYTDDQEAADIWHQQEGVPLERIFRFGEKDNFWSMGDTGPCGPCSEIFYDQGEAAG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   + +RY+EIWN VFMQF++        LPK S+DTGMGLER++ V+Q  T+
Sbjct: 184 CGSPDCTVGCDCDRYMEIWNNVFMQFDRSTDGVLTPLPKPSVDTGMGLERISAVMQGVTS 243

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DL + +I+  E+++G  Y  +  + V+ RVI DH R+ +FLI DG LP+NEGRGYV
Sbjct: 244 NYDTDLIQGIIRHVERLSGKTYGKDERDDVSMRVIADHARAVTFLICDGALPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA  +A++LG  +P++ H++ A+   MG+AYPEL++ +  I++ + +E++RF +
Sbjct: 304 LRRIMRRAARHAKMLGLADPMLCHMVDAVRDMMGAAYPELVEREEYIKKVILAEEQRFAE 363

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLDRGL +L+  ++ +      ++ GDV F+LYDT+G P+D+  DI+ + G   ID   F
Sbjct: 364 TLDRGLAMLNDEVARMRAAGSTVIPGDVLFRLYDTYGFPIDLTADIVESEGFT-IDEAGF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            Q +E QR +AR H  G G+    +++  L  +    +F+GYD L               
Sbjct: 423 EQCMERQREQAREHWKGSGAEGIGRVYKELYSRGIRGEFVGYDGL--------------- 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V AI++ G  VE A +G+ +E+V + TPFY E+GGQ GD G      
Sbjct: 468 --------SALSPVLAIIRDGVEVESATAGETIELVTESTPFYGESGGQKGDCGSISTGN 519

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L+++   +    + VHHA V  GI+R      L +    R   + NH+ATHLL  AL 
Sbjct: 520 SHLEVSGASRPYSDLIVHHATVREGIIRKGDGADLRVSRPERSATARNHTATHLLQAALR 579

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS ++PD LRFD  H   +T+ E++ +E  VN  +  N PVV   M+   
Sbjct: 580 RVLGEHVKQAGSLVSPDRLRFDFIHFTAMTTEEIRRVETLVNGFVMDNQPVVITQMDMAS 639

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL   KY D VRVV       G  S  LCGGTHV +TGEI L  I++E+ I A
Sbjct: 640 AIEAGATALFDEKYGDNVRVVRA-----GEVSMELCGGTHVRATGEIGLFKIITETGIAA 694

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA TG  A S +   +++ ++LA  LK   GN+  R+E++    R++Q      +
Sbjct: 695 GVRRIEAQTGGGALSFVRQMEDEQRALAGLLKAEGGNLPERLEKLLARQREMQREIESLQ 754

Query: 779 LQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +LN     DL     ++  +  ++  +   D K L+ + D L+++I  G+I+L G +  
Sbjct: 755 GKLNAAASGDLLSGVEEVGGIKLLAAEVRVEDVKALRDLSDTLKERIGQGVIVL-GAAIG 813

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            KA++L+ VT +L     A DL +  A ++ GG GGG+P +AQ+GG
Sbjct: 814 GKANLLVAVTRELSGTVKAGDLVKKLAPLV-GGSGGGKPELAQAGG 858


>gi|189426203|ref|YP_001953380.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189422462|gb|ACD96860.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 876

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/903 (43%), Positives = 547/903 (60%), Gaps = 42/903 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F+  GH ++ SS LIP NDPTLMFTN+GM  FK+ F G E   Y    + 
Sbjct: 4   NEIRARFLKYFEDRGHVVVSSSGLIPQNDPTLMFTNAGMNQFKDCFLGMEDRGYYRAASS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD  R
Sbjct: 64  QKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDTSR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G  + 
Sbjct: 124 LYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPEVG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   + +RY+EIWN VFMQF +        LPK ++DTGMGLER+ TV+Q   +
Sbjct: 184 CGSPDCAVGCDCDRYMEIWNNVFMQFNRTADGVLHPLPKPAVDTGMGLERITTVMQGVRS 243

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DL + +I+  E+ +G KY  N  + V+ RVI DH R+ +FLI DG LP+NEGRGYV
Sbjct: 244 NYDTDLLQGIIRHIERHSGKKYGDNEKDSVSMRVIADHCRAVTFLICDGALPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA  +A++LG  EPL+  ++ A+   MG AYPEL + +  I + + +E+ERF +
Sbjct: 304 LRRIMRRAARHAKMLGVAEPLLCRMVDAVREMMGDAYPELAERETYIRKVVLAEEERFNE 363

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLDRGL +L+  ++ L  G   ++ G+  FKLYDT G P+D+ +DI+ A G + +D   F
Sbjct: 364 TLDRGLAILNEEVASLRAGGCSVIPGETLFKLYDTFGFPVDLTEDIVRAEGFS-VDEPGF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              +E QR   R H  G G+     ++  L      T F+GY  L  + F          
Sbjct: 423 EACMEHQRELGREHWKGSGAAGIADVYKELHNHGLRTNFVGYGSL--TAF---------- 470

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V A+++ G+ V+ A +G K++++ D +PFY E+GGQ GDTGC     
Sbjct: 471 -----------SPVTALLRDGKKVQSATAGDKIDLICDTSPFYGESGGQAGDTGCISSGS 519

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            RL++    +    + VHHA+V+ G ++T  ++ LT+    RR  + NHSATHLL  AL 
Sbjct: 520 ARLEVLATSRPFTDLVVHHALVKEGAIKTGDAVNLTVAIDKRRATARNHSATHLLQAALR 579

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H+ Q GS + P+ LRFD TH   +T  EL+ +ED VN  I  N  +  R M  ++
Sbjct: 580 QVLGEHIKQAGSLVEPNRLRFDFTHFTGVTPEELQQVEDLVNGWIMDNAELNIREMGMQE 639

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ SGA AL   KY   VRVV +     G  S+ LCGGTHV + G+I L  I+SE  I A
Sbjct: 640 AVESGATALFDEKYGSTVRVVRI-----GEVSAELCGGTHVRAAGDIGLFKILSEGGIAA 694

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIE  TG  A S +   + + +++A  LK     +V RVE++ E  R+LQ      +
Sbjct: 695 GVRRIEGATGFNALSFVRRLEGERQTVAELLKADSSKLVDRVEKLVERQRELQREVESLQ 754

Query: 779 LQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +LN     DL     +   V  ++  +  VD K L+ + D L+ K+ SG+++L G   +
Sbjct: 755 GKLNTAQSGDLLSQVQEAGGVKLLAVQVQVVDIKALRDMADQLRDKLGSGVVVL-GAELD 813

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA++L+ VT+DL  RF A +L    A ++ GG GGG+P +AQ+GG    K  +A+A V+
Sbjct: 814 GKANLLVTVTKDLTGRFKAGELVGTLAPII-GGRGGGKPELAQAGGSQPEKLPEALAAVS 872

Query: 894 SFL 896
           + +
Sbjct: 873 ALM 875


>gi|327483364|gb|AEA77771.1| Alanyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 860

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 550/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+ +L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGSLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|288933924|ref|YP_003437983.1| alanyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290510997|ref|ZP_06550366.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|288888653|gb|ADC56971.1| alanyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289775990|gb|EFD83989.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 875

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/894 (44%), Positives = 561/894 (62%), Gaps = 56/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI +  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I        G ++F GYD L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GVSEFKGYDHLE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD G
Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATHL
Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T 
Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I S
Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  ++N +  ++SE   V+ K L++++D L+ ++ S +++L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856


>gi|323526792|ref|YP_004228945.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383794|gb|ADX55885.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 890

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 18  KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 77

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L +
Sbjct: 78  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 137

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 138 EKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 197

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 198 FYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 257

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 258 AVLQHVHSNYEIDLFQALIKAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 315

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        ++  L  +MGSAYPEL  A+  + + LR E
Sbjct: 316 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQQRVTDVLRQE 375

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L K   + L+G++AFKL+DT+G PLD+  D+ C      
Sbjct: 376 EERFFETIEHGMSILENALAELEKKGRKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 434

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F++A+  QR +ARA           K+   L+     T F GY+     + + +D
Sbjct: 435 VDEAAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 482

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V+E   GQ+  VV D TPFYAE+GGQ+GD G
Sbjct: 483 AKVV-----------------ALYVDGASVQEVAQGQQAVVVLDHTPFYAESGGQVGDQG 525

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                 +R  + D  K    +  HH  +E+GIL+    +   ID   R + + NHSATHL
Sbjct: 526 LLANASVRFAVADTLKVQADVVGHHGTLEQGILKVGDVVKAEIDAVRRARTARNHSATHL 585

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E+ VN  +  N P + R
Sbjct: 586 MHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 645

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 646 VMPFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 699

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A   +   D ++ + AS LK     +  R+ ++ ++ ++L  
Sbjct: 700 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAASVLKAQPSELTQRITQVQDQVKQLEK 759

Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D       ++A V  ++  +   D K L+  +D L+ K++S  I+L
Sbjct: 760 ELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRKTVDKLKDKLKSAAIVL 819

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 820 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 877

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 878 ALAGVKGWVE 887


>gi|297580680|ref|ZP_06942606.1| alanyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297535096|gb|EFH73931.1| alanyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 860

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGASFHKLVGPLAEVMGTAGAELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|254226851|ref|ZP_04920422.1| alanyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125620648|gb|EAZ49011.1| alanyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 860

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  +    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEISTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFYVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|325579107|ref|ZP_08149063.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159342|gb|EGC71476.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 874

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/913 (43%), Positives = 557/913 (61%), Gaps = 60/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI  + +V G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A ID   F + +E QR RA++ S  G+      ++        G T+F GY         
Sbjct: 418 A-IDEAGFEREMEAQRLRAQSASQFGMDYNNVIRV-------EGETKFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + + L +             V A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 461 -TESESLAK-------------VTALFHDGKSVESITAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     GI+  + D QK  + +F H   +E+G L+   ++   +D   R Q S+NHSA
Sbjct: 507 DSGYLTSQGIQFNVKDTQKYGQ-VFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  + +N  V
Sbjct: 566 THLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T +M+ E A A GA AL G KY D VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDVMDIEAAKAKGAMALFGEKYADVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+E+++ AG+RRIEA+TG+ A + L  Q   L   A   K     +V +++++ ++ +K
Sbjct: 681 IVAETAVAAGVRRIEAVTGENAMNWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K  +Q    DL  S  KI DV+ + H +  +++K L+ ++D L+ ++ SG
Sbjct: 741 AEKELQGLKEKAAMQAG-SDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSG 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+   I  + K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG    
Sbjct: 800 VIVFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPE 857

Query: 884 KADQAIAGVASFL 896
             + A+    ++L
Sbjct: 858 NVNLALTVAQNWL 870


>gi|307730458|ref|YP_003907682.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584993|gb|ADN58391.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 890

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 18  KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 77

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L +
Sbjct: 78  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 137

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 138 EKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 197

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 198 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 257

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 258 AVLQHVHSNYEIDLFQALIKAAARETGVSDLANNSL--KVIADHIRACSFLIVDGVIPGN 315

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        ++  L  +MGSAYPEL  A+  + + LR E
Sbjct: 316 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQARVTDVLRQE 375

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L K     L+G++AFKL+DT+G PLD+  D+ C      
Sbjct: 376 EERFFETIEHGMSILENALAELEKKGARTLDGELAFKLHDTYGFPLDLTADV-CREREVT 434

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F++A+  QR +ARA           K+   L+     T F GY+     + + +D
Sbjct: 435 VDEAAFDEAMARQREQARA-------AGKFKMSQGLEYSGAKTTFHGYE-----EIVFDD 482

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V+E   GQ+  VV D TPFYAE+GGQ+GD G
Sbjct: 483 AKVV-----------------ALYVDGASVQEVAHGQQTVVVLDHTPFYAESGGQVGDQG 525

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                 +R  +TD  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 526 LLANASVRFAVTDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 585

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E+ VN  +  N P + R
Sbjct: 586 MHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 645

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 646 VMPFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 699

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ ++L  
Sbjct: 700 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLEK 759

Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D       ++A V  ++  +   D K L+  +D L+ K++S  I+L
Sbjct: 760 ELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 819

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +      
Sbjct: 820 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLGA 877

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 878 ALAGVKGWVE 887


>gi|85712448|ref|ZP_01043497.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85693726|gb|EAQ31675.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 867

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/905 (42%), Positives = 560/905 (61%), Gaps = 58/905 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F++FF++ GH+ +PS+S+IP NDPTL+FTN+GMVPFK++F G +K  Y   T+ 
Sbjct: 6   AEIREKFIQFFEQRGHQRVPSASMIPANDPTLLFTNAGMVPFKDVFLGTDKRNYTRATSA 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+E  L   +
Sbjct: 66  QRCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKTEAIEFAWHFLTQELQLPAEK 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV++ED+EA+ +W K  G+  D+I RI   DNFWSM +TGPCGPCSE+F+D G  + 
Sbjct: 126 LWVTVFEEDDEAYDIWAKHIGVPEDRISRIGVKDNFWSMGDTGPCGPCSEVFYDHGPEVW 185

Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PG+ EE G+RYIEIWNLVFMQ+ +Q       LP  SIDTGMGLER+A +LQ   +N
Sbjct: 186 GGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTMEPLPNPSIDTGMGLERIAAILQGVHSN 245

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+ID F+ LI+ S  + G+    +  +  RVI DH+RS SFLIADG++P+NEGRGYVLRR
Sbjct: 246 YEIDTFQALIKRSADIIGVSDLSSKSL--RVIADHIRSCSFLIADGVMPSNEGRGYVLRR 303

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  +     L+  L   MG AYPEL++ + +IE+ L+ E+++F KTL+
Sbjct: 304 IIRRAVRHGNLLGAKQTFFYQLVDELVKLMGEAYPELVEKRHIIEDALKREEQQFEKTLE 363

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RGL +L+  +  L  +  LNG+V FKLYDT+G P+D+  DI     L  ID   FN A++
Sbjct: 364 RGLAILNDEIKQLSGN-TLNGEVVFKLYDTYGFPMDLTADIARENELV-IDEEGFNAAMQ 421

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR RA+  S   G     ++  + K     + F GY          ED+          
Sbjct: 422 AQRERAQKASQ-FGVDYNAQVKATTK-----SVFDGY---------TEDK---------- 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 + V  +  +G  VE   +GQ+  VV   TPFYAE+GGQ+GDTG  + +  R ++
Sbjct: 457 ----AQTTVVELFHEGTAVESLEAGQQGVVVLANTPFYAESGGQVGDTGVLLANQGRFEV 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TD Q   + I  HH   +  I +   ++   ID + R  +  NHSATHLLH AL  ILG 
Sbjct: 513 TDTQYIGKAI-AHHGQADCTI-KLGDAVTAEIDSERRANIRRNHSATHLLHAALRDILGD 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +  + +RFD  H +P+T A++  +E  VN+ I +N+ + T++MN ++A  +G
Sbjct: 571 HVQQKGSLVEAERMRFDFAHFEPLTKAQITELERVVNEQIRKNVRLTTQVMNIDEAKKAG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+D VRVV +     G  S  LCGGTHV++TG+I L  I  E+ I +G+RR+
Sbjct: 631 AMALFGEKYDDDVRVVRM-----GEFSMELCGGTHVAATGDIGLFRITHETGIASGVRRL 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E +TG  A   +  Q   L  L +  K  +  ++G+V+++  +YR+L+     RK +   
Sbjct: 686 EVVTGAAAFEFMANQQAILNQLTADFKTDETGLLGKVDQLQSKYRELE-----RKAEQLQ 740

Query: 784 EDLS-------CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833
           + L+         +  ++N    I++++   ++K L+ ++D L+ ++ SG+++L   ++ 
Sbjct: 741 QKLAQQAGGGLVQQAVEMNGHKVIVAQLEDTEAKALRGIVDDLKNQLGSGVVLLA-TAQG 799

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S++  VT+DL     A DL   +A V+ GG GGGRP MAQ+GG N     +A+A   
Sbjct: 800 SKVSLIAGVTKDLTSIVKAGDLVNQAANVV-GGKGGGRPDMAQAGGSNPEHLSEALATAT 858

Query: 894 SFLKK 898
           S+L++
Sbjct: 859 SWLEQ 863


>gi|261346225|ref|ZP_05973869.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282565533|gb|EFB71068.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 875

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/913 (44%), Positives = 563/913 (61%), Gaps = 64/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT E  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEIGVPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG+ EE G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGTPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDID+F+ LI A+ + TG     N  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 ISAVLQHVNSNYDIDIFRELIAAAAEATGATDLSNKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  +     L+P L   MG+A  EL + + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVPTLIKVMGTAADELQRQQAMVEKVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L K + L G+ AF+LYDT+G PLD+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLQLLDDELASL-KGDTLEGETAFRLYDTYGFPLDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E+QR RAR  S G G+     I    +     ++F GY         + D
Sbjct: 420 VDEEGFERAMEDQRRRARESS-GFGADYNALIKVDKR-----SEFSGY---------QHD 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +               + + A+ + G+ V+   +G++  V+ D+T FYAE+GGQ+GDTG
Sbjct: 465 EQ--------------QATITALYKDGQPVDALNAGEEGLVILDKTAFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I  H   VE G L     +   ++ + R  + +NHSATHL
Sbjct: 511 VLTNESGNFVVLDTQKYGQAIG-HVGKVESGSLVVNHRISARVNSERRNAIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I QN  + T 
Sbjct: 570 LHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEALTQQQLRQVEDIVNAQIRQNSEIETE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH S TG+I L  I+S
Sbjct: 630 LMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA TG  A  HL  Q E+L ++A  LK    ++V +V+   ++ R L+ 
Sbjct: 685 ESGTAAGVRRIEATTGATAIEHLHAQSEQLSAIAHLLKGDANSLVEKVKAALDKSRNLE- 743

Query: 773 IHAKRKLQLNVEDLSCH------KIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
              K  LQL  +  S        K  DV  +  ++S++   D K L++++D L+ +++S 
Sbjct: 744 ---KEILQLKDQQASQESASLGSKAKDVKGIKLLVSQLNDTDPKLLRTMVDDLKNQLKSA 800

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   S + K S+++ VT DL  +  A DL    A+ + GG GGGRP MA +GG +  
Sbjct: 801 IIVLSTTSGD-KVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGSDVK 858

Query: 884 KADQAIAGVASFL 896
               A+A V  ++
Sbjct: 859 ALPTAMASVEQWV 871


>gi|145634774|ref|ZP_01790482.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145267940|gb|EDK07936.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 874

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/914 (43%), Positives = 555/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G   G G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSGQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKHTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VDKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|92112758|ref|YP_572686.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|122420679|sp|Q1QZX1|SYA_CHRSD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91795848|gb|ABE57987.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 868

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/899 (44%), Positives = 554/899 (61%), Gaps = 45/899 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+++GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++   Y   T+ 
Sbjct: 4   ADIRQAFLTFFEEHGHTIVPSSSLVPANDPTLLFTNAGMVPFKDVFLGRDPRPYVRATSA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L   +
Sbjct: 64  QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRGAIRFAWTFLTERLGLPADK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA ++WK   G+   +  ++   DNFW M +TGPCGP SEIFFD G  + 
Sbjct: 124 LWVTVHVSDDEAERIWKDEIGIDPARFSKL-DEDNFWQMGDTGPCGPSSEIFFDHGPEVA 182

Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS EE G+RYIEIWNLVFMQF++ +      LPK SIDTGMGLER+A VLQ   +N
Sbjct: 183 GGPPGSPEEDGDRYIEIWNLVFMQFDRDSAGTLNPLPKPSIDTGMGLERVAAVLQGVHSN 242

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF++L+ A+ + TG  Y+  +  + RVI DH+RS +FLI D +LP+NEGRGYVLRR
Sbjct: 243 YEIDLFQNLLNAASEATG--YDDTSAPSLRVIADHIRSCAFLITDDVLPSNEGRGYVLRR 300

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  EP    L+ AL  EMG+AYPEL +A+  IE+ L  E+E+F +TLD
Sbjct: 301 IIRRAIRHGHKLGAREPFFHTLVAALDAEMGAAYPELRKARPRIEKVLLKEEEQFARTLD 360

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ LL   L  L   E+L G+  FKLYDT+G P D+  D+   RG+  +D + F + LE
Sbjct: 361 HGMGLLTEALETL-DGEVLPGETVFKLYDTYGFPFDLTADVCRERGVT-LDEVGFQRELE 418

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR RARA S   G+  T  +     +  G T F GY+ L       ED           
Sbjct: 419 AQRERARAASQ-FGADYTAAL-----DLEGETAFTGYERL-------EDE---------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + +   + ++G  +    +GQ   VV D+TPFY E+GGQ GDTG    DG+R Q+
Sbjct: 456 -----ARVTALVDREGNALAALEAGQHGVVVLDRTPFYGESGGQAGDTGYLEADGMRFQV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TD QK+  G  +HH ++  G L    S+   +D   R     NHSATHLLH AL  +LG 
Sbjct: 511 TDTQKQG-GHHLHHGVLVEGRLDVGASVTPRVDASLRAATMRNHSATHLLHEALRQVLGE 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +T + LRFDV+H + +T A+L  +E  VN  I  N       M  ++A A G
Sbjct: 570 HVQQKGSLVTAERLRFDVSHFEAMTRAQLDEVERIVNAQILANAATRIEHMTLDEAKAKG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           AAAL   KY D VRV+++  +D    S  LCGGTHV+ +G+I   +I+SE+ + AG+RRI
Sbjct: 630 AAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCFHILSEAGVAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781
           EA+TG+ A ++   Q+ K+  +A  LK     V  R+E   E  R L  +L   K KL  
Sbjct: 687 EAVTGEGALAYFRDQEAKVARVAEQLKAKPEQVEARLEATLERNRTLEKELERLKAKLAS 746

Query: 782 NVE-DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               D+     ++A V  ++  +  V  KEL+ ++D L+ K+ SG+I+L G++ ++K S+
Sbjct: 747 ATSGDMLADVREVAGVKLLAKQVEGVGGKELRGLLDQLKNKLGSGVIVL-GVAGDEKVSL 805

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  VT+DL  R  A DL +  A+ + GG GGGR  MAQ+GG        A+A V S+++
Sbjct: 806 IAGVTDDLTARLKAGDLVKHVAEQV-GGKGGGRADMAQAGGSRPQALPDALASVPSWVE 863


>gi|212709394|ref|ZP_03317522.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM
           30120]
 gi|212688306|gb|EEB47834.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM
           30120]
          Length = 875

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/913 (44%), Positives = 561/913 (61%), Gaps = 64/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT E  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY  D+EAF +W K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYATDDEAFDIWNKEIGVPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+ID+F+ LI A+ + TG     N  +  RVI DH+RS +FL++DG++P
Sbjct: 244 ISAVLQHVNSNYEIDIFRELIAAAAEATGATDLSNKSL--RVIADHIRSCAFLVSDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL + + L+E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVSTLIKVMGPAAEELQRQQALVEKVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L K + L G+ AF+LYDT+G PLD+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLQLLDEELASL-KGDTLEGETAFRLYDTYGFPLDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E+QR RAR  S G G+     I    +     ++F GY         + D
Sbjct: 420 VDEAGFERAMEDQRRRARESS-GFGADYNALIKVDKR-----SEFSGY---------QHD 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +               + + A+ + G+ V+   +G +  V+ D+T FYAE+GGQ+GDTG
Sbjct: 465 EQ--------------QATIIALYKDGQPVDSLHTGDEGLVILDKTAFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D  +  +TD QK  + I  H   VE G L     +   ++ + R  + +NHSATHL
Sbjct: 511 VLTNDSAQFTVTDTQKYGQAIG-HVGKVESGSLVVNHRIAAIVNSERRNAIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I QN  + T 
Sbjct: 570 LHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTQQQLRQVEDIVNAQIRQNSEIETE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH S TG+I L  I+S
Sbjct: 630 LMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA TG  A  HL  Q E+L ++A  LK    ++V +V+   ++ R L+ 
Sbjct: 685 ESGTAAGVRRIEATTGAAAMEHLHAQSEQLSAIAHLLKGDVNSLVEKVKAALDKSRNLE- 743

Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
              K  LQL  +  S        K  DV  +  ++S++   D K L++++D L+ +++S 
Sbjct: 744 ---KEILQLKDQQASQESASLSSKAKDVKGIKLLVSQLSDTDPKLLRTMVDDLKNQLKSA 800

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   S + K S+++ VT DL  +  A DL    A+ + GG GGGRP MA +GG + +
Sbjct: 801 IIVLSTTSGD-KVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGTDVS 858

Query: 884 KADQAIAGVASFL 896
               A+  V  ++
Sbjct: 859 ALPTAMESVEQWV 871


>gi|238756253|ref|ZP_04617569.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238705508|gb|EEP97909.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 874

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/912 (43%), Positives = 570/912 (62%), Gaps = 63/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT------TNDNFWSMAETGPCGPCSE 174
            + +L++TVY+ D+EA+ +W    G+  ++IIRI        +DNFW M +TGPCGPCSE
Sbjct: 124 PKEKLWVTVYETDDEAYDIWANDVGVPRERIIRIGDKGAAFASDNFWQMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER+
Sbjct: 184 IFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ    NY+IDLF+ LI A   VTG     +  +  RVI DH+RS +FLI+DG++P+
Sbjct: 244 AAVLQHVNTNYEIDLFRDLITAVADVTGASDLSSKSL--RVIADHIRSCAFLISDGVIPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +  +LG  E     L+  L T MG A  EL Q + ++E+ L++
Sbjct: 302 NEGRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLITVMGPAADELKQQQAMVEQVLKT 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  +
Sbjct: 362 EEEQFARTLERGLALLDEELSQLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+E QR RAR  S G G+      + SL     A++F+GYD +          
Sbjct: 420 DEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDTASEFLGYDHIEQ-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+ + GE V+E  +G+   VV +QTPFY E+GGQ+GD G 
Sbjct: 466 ---------------QATVIALFRNGEAVDEVHTGEDAVVVLNQTPFYGESGGQVGDEGV 510

Query: 534 ---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
              A+ D I   ++D QK  + I  H   + RGILR   S+   +D   R ++ +NHSAT
Sbjct: 511 LKSAMADFI---VSDTQKYGQAIG-HLGQLSRGILRVNDSVDAVVDSMRRNRIRLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN  I +NLP+ 
Sbjct: 567 HLLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAQIRRNLPIQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  ++A   GA AL G KY+D+VRV+++     G  S+ LCGG H + TG+I L  I
Sbjct: 627 TELMELDEAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--- 767
           ++ES   AGIRRIEA+TG+ A + L  Q + L+++A  +K    N+  ++  + +     
Sbjct: 682 LTESGTAAGIRRIEAVTGEGAMALLHQQSDLLQNIAHLVKGDSNNLTDKIRTVLDRSKAL 741

Query: 768 -RKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            R+LQ +  ++  Q +     S  ++  V  +   +  V++K L++++D L+ ++ S II
Sbjct: 742 ERELQQLKDQQAAQESASLSASAKQVNGVKLLVSRLDNVEAKMLRTMVDDLKNQLGSAII 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L   + + K S+++ VT+DL +R  A +L A ++ KV  GG GGGRP MAQ+GG +   
Sbjct: 802 VL-ATTADDKVSLIVGVTKDLTNRVKAGELIADIAQKV--GGKGGGRPDMAQAGGTDVQA 858

Query: 885 ADQAIAGVASFL 896
              A+A V +++
Sbjct: 859 LPSALASVEAWV 870


>gi|206559783|ref|YP_002230547.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|198035824|emb|CAR51715.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 874

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTAVYQLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADVDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   I  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|153826924|ref|ZP_01979591.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|254291229|ref|ZP_04962025.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|149739227|gb|EDM53495.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|150422923|gb|EDN14874.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 860

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|145628290|ref|ZP_01784091.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145638384|ref|ZP_01793994.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|144980065|gb|EDJ89724.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145272713|gb|EDK12620.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309751524|gb|ADO81508.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 874

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/914 (42%), Positives = 555/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLSNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQV-KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFHDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNTIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|262149022|ref|ZP_06028166.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262031167|gb|EEY49787.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 873

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/894 (44%), Positives = 545/894 (60%), Gaps = 67/894 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAH 843


>gi|294788161|ref|ZP_06753404.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483592|gb|EFG31276.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 873

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/908 (43%), Positives = 559/908 (61%), Gaps = 56/908 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  +L+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKYLQFFESKGHQIVRSSSLVPHNDPTLLFTNAGMNQFKDVFLGFDKRSYTRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW+ LT     +L 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIHYAWEFLTSPEWLNLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +W K  GL  +KI+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 KEKLLVTVYAEDDEAYNIWHKEIGLPENKIVRIGDNKGAKYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEHIWGGIPGSPEEDGDRWIEIWNNVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF++L++A  + TG+++   ++ + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQGVHSNYEIDLFQNLLKAVARETGVEF-SMDVPSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGDAYPELREKQTQIEEALKA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+VLL+  LS  G  + LNG++ FKLYDT+G P D+  DI C      +
Sbjct: 362 EETRFAQTLETGMVLLENALS--GSLKRLNGEIIFKLYDTYGFPYDLTADI-CREREVEM 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+A++EQR+RARA           K    L      TQF GY           +R
Sbjct: 419 DEDGFNKAMDEQRARARA-------AQNFKANTQLDYNGQDTQFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K             V++ V A+ +  E V E   G+   +V DQTPFYAE+GGQ+GD G 
Sbjct: 462 K-------------VNATVIALYKDSEAVTELHEGETGAIVLDQTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R ++ D QK    +F    +   G L+   S++  ID   R     NHSATHL+
Sbjct: 509 ILAGENRFEVRDTQKIKAAVFGQFGVQVSGSLKVGDSVLAEIDNDIRDANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +T +  RFD++H++ IT  E+  +E  VN  I  N+ V   I
Sbjct: 569 HKALREVLGNHVEQKGSLVTAESTRFDISHNQAITPEEIAEVERRVNTAILANVAVDANI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHV+ TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GEFSTELCGGTHVARTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQL 772
           S I AG+RR+E ITG  A      Q+  LK++ S +K  ++ +V+ +++    + + L+ 
Sbjct: 684 SGIAAGVRRLEVITGLNALRWAQNQETLLKNIISEVKAQTEKDVLSKIQANANQTKALEK 743

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLV 828
             AK K +L V   +       D+  +S +++++D++   L+ ++  L  K    +++L 
Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGTVSLVVAQIDAEASALRDIVTDLTGKSDKAVVLLA 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  + 
Sbjct: 804 AVN-DGKVSLCAGVSKPLTAKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKLPET 861

Query: 889 IAGVASFL 896
           +A V +++
Sbjct: 862 LASVENWV 869


>gi|254448289|ref|ZP_05061751.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198262156|gb|EDY86439.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 868

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/904 (42%), Positives = 563/904 (62%), Gaps = 45/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ ++IR  FL++F   GH ++PSSSL+P  D TL+FTN+GMVPFK++F GQE+  Y  
Sbjct: 1   MTSSANIRKQFLDYFASKGHAVVPSSSLVPAGDDTLLFTNAGMVPFKHVFLGQEQRDYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT+   L
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYGWEFLTQVVGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV++ED+EA  +W K  G+  D++ RI   DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKEKLWVTVFEEDDEAADIWLKEIGVDPDRLSRIGAKDNFWQMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PG+ EE G+RYIE+WNLVFMQ+ +        LPK S+DTGMGLER+A +LQ 
Sbjct: 181 EHIWGGPPGTPEEDGDRYIEVWNLVFMQYNRSQDGTLTPLPKPSVDTGMGLERLAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI A+ +  G++   + I +  VI DH+RS +FL+ DG+LP+NEGRGY
Sbjct: 241 VHSNYEIDLFQALIHAAGKAVGVEKPSHEISSLNVIADHIRSCAFLVVDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  +   LG  +P    L+  L  +MG AYPEL +++  +E+ L+ E+ERF 
Sbjct: 301 VLRRIIRRACRHGYKLGQNQPFFYTLVEELVAQMGEAYPELSESQARVEQVLKKEEERFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL +G+ +L+  +  L  + I  G+  F+LYDT+G P+D+  DI     L  ID+  + 
Sbjct: 361 ETLSQGMGILNQAIDSLDGERI-PGETVFQLYDTYGFPVDLTADIAREHEL-DIDLEGYE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +EEQR RARA S   G+  +E+I FS +     ++F GY+ L                
Sbjct: 419 ACMEEQRQRARAASQ-FGADLSERIEFSEE-----SEFTGYEHLNH-------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     +++  ++  G  VE    GQ+  VV + TPFYAE+GGQ+GD G  + +G+
Sbjct: 459 ---------EAVISHLIVDGSEVERIAEGQQGMVVLNSTPFYAESGGQVGDRGVLVSEGV 509

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ D QK+  G  VH   +E G L    +++  +D   RR   +NHSATHL+H AL  
Sbjct: 510 RFRVDDTQKQG-GAIVHIGHLECGELSLNDNILAEVDMAKRRATELNHSATHLMHWALRE 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  + LRFD +H +P+T +EL  +ED VN  I +N    TR+M  EDA
Sbjct: 569 VLGDHVQQKGSLVNEEYLRFDFSHFQPMTDSELAQVEDLVNAEILKNRATQTRLMTMEDA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA AL G KY D VRV+++     G HS  LCGGTHV  TG+I L  ++ E  + +G
Sbjct: 629 KAAGAMALFGEKYGDEVRVLNI-----GDHSIELCGGTHVDRTGDIGLFKLIGEGGVASG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RR+EAITG  A+  +   D+ ++ LA+ L+  +G+V  +VE++ ++ R+L+    + K 
Sbjct: 684 VRRVEAITGIAAQQWVRQTDDTVRQLAARLRTDRGSVADKVEQLADKNRQLEKELERLKS 743

Query: 780 QLNVE---DLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L  +   D++    +I  +  ++  +   D+K L+S +D L+ K+ +  I+L G +   
Sbjct: 744 KLASQAGGDIASQAVEIDGIKVLATALEGADTKVLRSTLDQLKDKLGAAAIVL-GAADGD 802

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT+    R  A +L    A V  GG GGGRP MAQ+GG +    + A+A V +
Sbjct: 803 KVRLVAGVTKSETSRIKAGELVNHVA-VQVGGRGGGRPDMAQAGGSDPAALEGALASVET 861

Query: 895 FLKK 898
           ++++
Sbjct: 862 WVRE 865


>gi|167587422|ref|ZP_02379810.1| alanyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 874

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G E   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTESRPYTRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLNNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKAAQGLEYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATHL+
Sbjct: 511 LANASTRFAVGDTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R+
Sbjct: 571 HKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I    IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGFFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D   L   ++  V+ ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELALQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|145636626|ref|ZP_01792293.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145270152|gb|EDK10088.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 874

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/914 (42%), Positives = 555/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI DV+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQTGSDFVKSAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|229525206|ref|ZP_04414611.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229338787|gb|EEO03804.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 860

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERV 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|229530358|ref|ZP_04419746.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229332131|gb|EEN97619.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)]
          Length = 860

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 548/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGNIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|114562241|ref|YP_749754.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122300463|sp|Q085Z9|SYA_SHEFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114333534|gb|ABI70916.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 874

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/913 (42%), Positives = 555/913 (60%), Gaps = 58/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R+ FL++F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 2   FQTTAELRSAFLKYFEDNGHQVVDSSSLVPTNDPTLLFTNAGMNQFKDVFLGMDKRNYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 62  ATTSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTETLKL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL +T+Y+ D+EA+ LW +  G+ A+ +IRI  N       DNFW M +TGPCGPCS
Sbjct: 122 PKERLCVTIYETDDEAYDLWTQKIGVPAENMIRIGDNKGGAFASDNFWQMGDTGPCGPCS 181

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER
Sbjct: 182 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMLPLPKPSVDTGMGIER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+FK LI  + ++ G+    N  +  RVI DH+RS +FLIADG++P
Sbjct: 242 IAAIMQGVHSNYEIDIFKQLIAKTAEIIGVTDLENKSL--RVIADHIRSCAFLIADGVMP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG  +     L+P L + MG A   L Q + ++E+ L+
Sbjct: 300 SNEGRGYVLRRIIRRAVRHGNKLGANDAFFYKLVPTLISVMGDAAIGLKQTQAIVEKALK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGLV+LDG L+ L  D  L+GD  FKLYDT+G P+D+  D+   R +  
Sbjct: 360 AEEEQFARTLERGLVILDGALNSLQGD-TLDGDTLFKLYDTYGFPVDLTADVCRERDI-N 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+ EQRSRA+A     G+    ++    +     T F GY  L G       
Sbjct: 418 VDEAGFESAMAEQRSRAQAAG-NFGADYNSQLIIDAE-----TAFSGYTELTG------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                 +P           V A+   G+ V+   +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 465 ------QPN----------VIALYVDGKAVDTVKAGQDAVVVLDNTPFYAESGGQVGDKG 508

Query: 533 CAIGDGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
               DG+   + D QK   A G   H   + +G L     L   +D + R +  +NHS T
Sbjct: 509 LLTADGVVFTVADTQKFGPATG---HQGQLAQGQLVIGQQLTAQVDKKLRHRTQLNHSVT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHVSQ GS + P+ LRFD  H + +  +ELK++ED VN  I +N  + 
Sbjct: 566 HLLHAALRQVLGSHVSQKGSLVNPERLRFDFAHFEAVKPSELKAVEDLVNTQIRRNHELC 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T  M  ++A   GA AL G KY+D+VRVV++     G  S  LCGGTHV  TG+I L  I
Sbjct: 626 TAEMAIDEAKEKGAMALFGEKYDDQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE+ I AG+RRIEA+TG  A +++  Q   L   A  LK    +VV +++   ++ ++L
Sbjct: 681 TSENGIAAGVRRIEAVTGIAAMAYIAEQQAMLDEAAQLLKSDSASVVVKLKAQLDKVKQL 740

Query: 771 Q--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825
           +  L   K KL             ++N +  ++ +   +D   L+ + D L++K++S II
Sbjct: 741 EKDLSQLKDKLAAAASADMAGDAVEINGVKLLVKQLDGIDPGSLRGLQDELKQKLKSAII 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G +K+ K +++  V+ DL  +  A +L  + A+ + GG GGGRP MAQ+GG      
Sbjct: 801 VL-GTAKDGKVNLIAGVSNDLTKKVKAGELVAMVAQHV-GGKGGGRPDMAQAGGTQPENL 858

Query: 886 DQAIAGVASFLKK 898
             A+A V  ++ +
Sbjct: 859 AAALALVEPWVNE 871


>gi|194290351|ref|YP_002006258.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193224186|emb|CAQ70195.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 874

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/910 (44%), Positives = 546/910 (60%), Gaps = 59/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   T+
Sbjct: 3   VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L   
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKTYQLPAE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSEIF
Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIE+WNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF+ LI+A+ + T +     N +  +VI DH+R+ +FLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSL--KVIADHIRACAFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG   P    L+P L  +MG AYPEL +A+  + E L++E+
Sbjct: 301 GRGYVLRRIIRRAIRHGYKLGQKTPFFHKLVPDLVEQMGQAYPELAEAQSRVTEVLKAEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ERF +T++ G+ +LD  L+ L    GK   L+G++AFKL+DT G PLD+ QD+ C     
Sbjct: 361 ERFFETIENGMAILDAALAELKLKGGK--TLDGELAFKLHDTFGFPLDLTQDV-CREQEI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D  +F+ A+  QR +ARA           K+   L+     T F GY+ L        
Sbjct: 418 GVDEAAFDAAMSRQREQARA-------AGKFKMAAGLEYIGDKTVFHGYEKLE------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
               L Q           + V A+   G  V+    GQ   VV D TPFYAE+GGQ GD 
Sbjct: 464 ----LPQ-----------AKVTALYVDGAAVDTMQPGQTGVVVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D  K    +F H   ++ G L+   ++   +D   R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLQGGALKVGDAVSAQVDALRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD +H+  +T A+++ +E+ VN  I +N     
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDAQIRQVEEIVNAEILRNEDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EVMPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            E  + AGIRR+EAITG  A  +L G D KL   A+ LK     +V R+ ++ E+ R L 
Sbjct: 683 MEGGVAAGIRRVEAITGDNALHYLQGLDAKLNEAAAVLKAQPSELVPRIGQVQEQVRALE 742

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIM 826
            +L   K KL  +  D    +  DV  +  + +++D    K L+  MD L+ K+QS  I+
Sbjct: 743 KELERLKSKLAASQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 L-GAVADGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFL 896
           QA+AGV+ ++
Sbjct: 861 QALAGVSEWV 870


>gi|229844682|ref|ZP_04464821.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|229812396|gb|EEP48086.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 874

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/914 (43%), Positives = 555/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI+ + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIEKTAEIVGATDLSNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|117621345|ref|YP_858162.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|205829972|sp|A0KPG1|SYA_AERHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117562752|gb|ABK39700.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 874

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/911 (42%), Positives = 564/911 (61%), Gaps = 57/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IRT FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STSEIRTAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+   L +
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF +W+K  G+ AD+I+RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 ERLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER++
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G     N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAEIVGTSDLSNQSL--RVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ + R LG TE     L   L  +M     ELI    L+E  LR E
Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATEVFFYKLAAELAAQMKDVAAELIAQLPLVERVLRIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TLDRGL+LL+ VL++LG  +++ G+V FKLYDT+G P D+  D++  R + GID
Sbjct: 362 EEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GID 420

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F   +E+QR+RA+ A S G+      K+ F        T F GY      K + E  
Sbjct: 421 EEGFKAEMEKQRARAKEASSFGVNYNEMLKLDFE-------TPFTGY------KTLTERT 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +V+     +D  +G+                 ++G +  +V +QTPFYAE+GGQ+GD+G 
Sbjct: 468 RVVGIYKGVDEVSGL-----------------IAGDEAVIVLEQTPFYAESGGQIGDSGT 510

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + DGI   +TD  K  + I +H   +E G L     +   +D + R+ +++NHS THL
Sbjct: 511 LKVDDGI-FAVTDTVKAGKAI-IHKGYMELGTLEKGAEVEAVVDGERRQAIALNHSVTHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN+ I  N  + T+
Sbjct: 569 LHAALRQALGEHVTQKGSLVGAERMRFDFSHFEGMTMATIRRVEELVNNQIRANHEITTQ 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++
Sbjct: 629 LMDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q  +  +V ++ ++     R
Sbjct: 684 ESGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQVLDKAKMMER 743

Query: 769 KLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L+ + AK   Q   + L    +I     +   +   D K L+ ++D L+ +++SG+++L
Sbjct: 744 ELEQLKAKLAAQAGNDLLGQVIEIKGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S E K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        
Sbjct: 804 A-TSGEGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPA 861

Query: 888 AIAGVASFLKK 898
           A+  V S+L++
Sbjct: 862 ALQSVHSWLEE 872


>gi|238027796|ref|YP_002912027.1| alanyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876990|gb|ACR29323.1| Alanyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 874

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/909 (42%), Positives = 542/909 (59%), Gaps = 55/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  +W+LLT  + L +
Sbjct: 62  TSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYSWELLTSVYGLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 EKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK SIDTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQNLIKAAARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEGRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+ C      
Sbjct: 360 EERFLETIEHGMTILEAALAELDAKGGKLLDGELAFKLHDTYGFPLDLTADV-CREREVT 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L      T F GY+     K   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLDYSGAKTTFHGYE-----KLALDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            K++                 A+   G  V EA +G++  VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKIV-----------------ALYVGGTAVNEAKAGEQAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  VE+G L+    L   +D + R +   NHSATHL
Sbjct: 510 TLANAAARFAVEDTLKVQADVIGHHGTVEQGALKVGDVLRAEVDAERRARTQRNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV Q GS +  +  RFD  H+ P++  E++ +E  VN  I  N P + R
Sbjct: 570 MHKALREVLGGHVQQKGSLVDAEKTRFDFAHNAPLSDEEIRRVEAIVNAEILANAPGIIR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I    IV+
Sbjct: 630 NMSYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGFFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D +L + A+ LK     +  R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELDARLSTAAAMLKAQPAELTQRIAQVQDQLKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K +L  +  D    +  DV     ++  +   DSK L+   D L+ K++   ++L
Sbjct: 744 ELAALKSRLASSQGDELAQQAVDVKGLRVLAATLEGADSKTLRETADKLKDKLKHAAVVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG    K  +
Sbjct: 804 AAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLPE 861

Query: 888 AIAGVASFL 896
           A+AGVA+++
Sbjct: 862 ALAGVAAWV 870


>gi|218516688|ref|ZP_03513528.1| alanyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 588

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/614 (57%), Positives = 438/614 (71%), Gaps = 27/614 (4%)

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDLDN G T  H TFFEMLGNFSFG YFKE AI+LAW L+T+ F L + RL 
Sbjct: 1   CVRAGGKHNDLDNFGYTACHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGLPKHRLL 60

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQGE + GG
Sbjct: 61  VTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQGENVWGG 120

Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            PGS+EE G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ   + +D
Sbjct: 121 PPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFD 180

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
            DLF+ L  A E   G+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIM
Sbjct: 181 TDLFRTLTGAIEDAVGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIM 238

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF KTL+RG
Sbjct: 239 RRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERG 298

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F  A++ Q
Sbjct: 299 LSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQ 357

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           ++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                       T
Sbjct: 358 KAEARSHWAGSGEKATETVWFELREKHGATEFLGYD-----------------------T 394

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  +++I+D
Sbjct: 395 EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHGKIEISD 454

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
            QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  +LG+HV
Sbjct: 455 TQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHV 514

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DAIA GA 
Sbjct: 515 AQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDAIAEGAM 574

Query: 666 ALLGTKYNDRVRVV 679
           AL G KY D VRVV
Sbjct: 575 ALFGEKYGDEVRVV 588


>gi|153802555|ref|ZP_01957141.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124121918|gb|EAY40661.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 860

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 549/909 (60%), Gaps = 67/909 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRTYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L    +L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGLVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFLKK 898
             V +++ +
Sbjct: 850 ESVDAWIAE 858


>gi|145632173|ref|ZP_01787908.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|144987080|gb|EDJ93610.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655]
          Length = 874

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/914 (43%), Positives = 554/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLSNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKILANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|256822655|ref|YP_003146618.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796194|gb|ACV26850.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 875

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/908 (43%), Positives = 555/908 (61%), Gaps = 55/908 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL FF+  GH ++ SS LIP NDPTL+FTN+GMV FK+ F G +K  Y   T+
Sbjct: 3   TNQIRNAFLTFFENKGHHIVDSSPLIPANDPTLLFTNAGMVQFKDCFLGIDKRSYTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+LLT+EF L + 
Sbjct: 63  SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYCWELLTEEFKLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY+ED+EAF +W    G  AD+I RI  N       DNFW+M +TGPCGPCSE+F
Sbjct: 123 KLWVTVYEEDDEAFDIWVNDIGFPADRISRIGDNKGERYASDNFWAMGDTGPCGPCSEVF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D GE I GG PG+ EE G+R+IEIWNLVFMQF +Q       LPK S+DTGMGLER+A 
Sbjct: 183 YDHGEEIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQKDGTMERLPKPSVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ   +NY+IDLF+HLI+++  +  +K   N  +  RVI DH+RS +FLI DGI+P+NE
Sbjct: 243 ILQGVHSNYEIDLFQHLIKSTADLLKVKDLDNKSL--RVIADHIRSCAFLILDGIVPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L   MG AYP L++ K LIE+ L  E+
Sbjct: 301 GRGYVLRRIVRRAVRHGHQLGAKGIFFAKLVQPLIEVMGEAYPALVEQKELIEKVLAKEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E F +TLD+G+++LD  ++ L     + ++GD  FKLYDT+G P D+  DI   +GL  +
Sbjct: 361 EAFARTLDKGMLILDQDIADLVETNGKTISGDTVFKLYDTYGFPQDLTADIAREKGLE-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+ +QR RARA S     GT     FS+ E+   ++F GY   +         
Sbjct: 420 DWDGFEKAMNQQRERARAAS---NFGTDYNDNFSIDER---SEFTGYHYTQ--------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          + +V  +++  + V+E   G+K  V+  +TPFYAEAGGQ+GDTG 
Sbjct: 465 --------------QNVVVTRLLKGEDEVKELDQGEKGVVILAKTPFYAEAGGQVGDTGR 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G G    + D QK  + I  H   V+RG    +  L   +D + R+    NHSATHLL
Sbjct: 511 LFGCGATFIVEDTQKLGDAI-AHIGYVQRGSFSNDAELTAEVDAERRQHTMRNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ILG+HV+Q GS + P+ LRFD ++ +P+T  +L+ IE  VN  I +N  V    
Sbjct: 570 HAALRDILGTHVTQKGSLVGPERLRFDFSNPEPVTQEQLRQIEALVNQKIYENHAVEAAT 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A   GA AL G KY D VRV+++        S  LCGGTHV  TG+I    I+SE
Sbjct: 630 MSMDEAKEHGAMALFGEKYGDEVRVLTMS-----PFSVELCGGTHVQRTGDIGAFKILSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-L 772
           S I AGIRRIEA TG  A + +   +  L+S+   LK     V  +V ++ ++ R+L+  
Sbjct: 685 SGIAAGIRRIEATTGAGAVNWMQSTEASLQSIGKLLKSEPSQVAEKVNQLMDKSRQLEKT 744

Query: 773 IHA-KRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828
           I A + KL  +       +  D+N +  ++++   V++K L+ + D L+ K+ S I++L 
Sbjct: 745 IEALQSKLASSQGSDLASQAEDLNGIKLLVAKLEGVEAKALRDIQDQLKNKLGSSIVVL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           GI++E K S+++ V++DL  +  A +L  + A  + GG GGGRP MAQ+GG +      A
Sbjct: 804 GIAEEDKVSIIVGVSKDLTGKVKAGELVNMVASQV-GGKGGGRPDMAQAGGKDPAALPAA 862

Query: 889 IAGVASFL 896
           +  V  ++
Sbjct: 863 LDSVKPWV 870


>gi|148262305|ref|YP_001229011.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|205830100|sp|A5GD98|SYA_GEOUR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146395805|gb|ABQ24438.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 876

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/895 (43%), Positives = 550/895 (61%), Gaps = 44/895 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F +FF++ GH ++ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y    + QK
Sbjct: 6   IRAQFFKFFEERGHTVVESSNLIPRNDPTLLFTNAGMNQFKDVFLGLEKRDYVRACSSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  LD+ RLY
Sbjct: 66  CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKELKLDKDRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G     G
Sbjct: 126 VTVYTDDDEAADIWNRQEGVPLERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCG 185

Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            P + E G   +RY+EIWN VFMQF +  +     LPK S+DTGMGLER++TV+Q  T+N
Sbjct: 186 SP-TCEVGCDCDRYMEIWNNVFMQFNRDAQGNLTPLPKPSVDTGMGLERISTVMQGVTSN 244

Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           YD DL + +I+  E+++G +Y  +  + V+ RVI DH R+ +FLI DGILP+NEGRGYVL
Sbjct: 245 YDTDLLQGIIKHVEKLSGKRYRQDERDDVSMRVIADHSRAITFLICDGILPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRA  +A++LG+ EP +  ++ A+ T MG AYPEL++ +  I++ + +E+ERF +T
Sbjct: 305 RRIMRRAARHAKMLGFAEPALYRIVDAVNTMMGDAYPELLEREEYIKKVIHAEEERFIET 364

Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LDRGL +L+  ++ L K+   ++ G+V FKLYDT+G P+D+  DI+   G   ID   F 
Sbjct: 365 LDRGLAILNEEVAALKKEGKSVVPGEVIFKLYDTYGFPVDLTADIVENEGFT-IDEDGFA 423

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E QR +AR +  G G     +I+ +L  +   + F+GY                   
Sbjct: 424 LCMERQRLQARENWKGSGEEGLAEIYKTLHGRGIRSAFVGYS------------------ 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S + AI+++G  V EAV+G+ VEVV D TPFY  +GGQ GDTG       
Sbjct: 466 -----EQTAYSAITAILREGAEVAEAVAGEMVEVVVDTTPFYGASGGQAGDTGVISTGSA 520

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++    K    + VH A+V  G ++   +  L +  + R   + NH+ATHLL  AL  
Sbjct: 521 HLRVVATSKPFPDLTVHRALVTEGTVKAGDAADLRVATEVRGATARNHTATHLLQSALRQ 580

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +T + LRFD TH   +T  EL+ +E+ VN  +  N  V +  M   +A
Sbjct: 581 VLGEHVKQAGSLVTAERLRFDFTHFSAMTVEELRRVENIVNTYVMDNADVKSLEMAATEA 640

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + SGA AL G KY DRVRVV V     G  SS LCGGTHV + G+I    IV E+ I AG
Sbjct: 641 MQSGATALFGEKYGDRVRVVKV-----GEVSSELCGGTHVRAAGDIGFFKIVGEAGIAAG 695

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG  A  ++   +++ +S+A  +K   G  + +V+ +    ++LQ      + 
Sbjct: 696 VRRIEALTGSGALEYVQQLEDEQRSIAVLVKAEGGTALDKVDRLLARQKELQREVEALQA 755

Query: 780 QLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +LN     DL     +   +  ++  +   D K L+ + D+L+ ++QSG+I ++G     
Sbjct: 756 RLNASRSADLLAGARETNGIKVLAAKVEMDDPKGLRELADSLKDRLQSGVI-VIGCVSAG 814

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           KA++L+ VT+DL DR  A D+ +  A ++ GG GGG+P +AQ+GG      D+A+
Sbjct: 815 KANLLVAVTKDLSDRLRAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEAL 868


>gi|145300678|ref|YP_001143519.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|205829973|sp|A4SS99|SYA_AERS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|142853450|gb|ABO91771.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 874

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/913 (42%), Positives = 569/913 (62%), Gaps = 61/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L +
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY+ D+EAF +W    G+  ++I+RI  N       DNFW M++TGPCGPC+EI
Sbjct: 124 ERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKGAAFASDNFWQMSDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER++
Sbjct: 184 FYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G     N  +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSL--RVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ + R LG T+     L   L  +M     ELI    L++  LR E
Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TLDRGL+LL+ VL++LG  +++ G+V FKLYDT+G P D+  D++  R + GID
Sbjct: 362 EEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GID 420

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              FN  +E+QR+RA+ A S G+      K+ F        T F GY             
Sbjct: 421 EEGFNAEMEKQRARAKEASSFGVNYNEVLKLDFE-------TPFTGY------------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K L QK         +S+V  I + G  V   ++G++  VV  +TPFYAE+GGQ+GD G 
Sbjct: 461 KQLSQK---------TSVV-GIYKDGVEVNGLIAGEEAVVVLAETPFYAESGGQVGDCGV 510

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + DGI   +TD QK  + I +H   +E G L     +   +D + R+ +++NHS THL
Sbjct: 511 LKVDDGI-FAVTDTQKAGKAI-IHKGYLELGTLEKGALVEAVVDGERRQAVALNHSVTHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN  I  N  + T+
Sbjct: 569 LHAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQ 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++
Sbjct: 629 VMDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q ++  +V +I ++     R
Sbjct: 684 ESGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALVKGDQFSIADKVRQILDKSKMMER 743

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
           +L+ + AK   Q   + LS  ++ ++N    +I+ +   D K L+ ++D L+ +++SG++
Sbjct: 744 ELEQLKAKLAAQAGSDLLS--QVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGVV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L   S + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG      
Sbjct: 802 LLA-TSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAV 859

Query: 886 DQAIAGVASFLKK 898
             A+  V S+L++
Sbjct: 860 PAALQSVHSWLEE 872


>gi|148826541|ref|YP_001291294.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229845865|ref|ZP_04465977.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|205830060|sp|A5UDR0|SYA_HAEIE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148716701|gb|ABQ98911.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229810869|gb|EEP46586.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 874

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/914 (43%), Positives = 554/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKSAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSIIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLTQIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEAITGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAITGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVITQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|297569857|ref|YP_003691201.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925772|gb|ADH86582.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 879

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/908 (43%), Positives = 555/908 (61%), Gaps = 43/908 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  F+E+F + GH L+ SS L+P  DPTL+FTN+GMV FK +FTG+EK  Y    
Sbjct: 2   NGNEIRQRFIEYFTQRGHTLVESSPLVPHEDPTLLFTNAGMVQFKKVFTGEEKRDYSRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI++AWD LTKE  L  
Sbjct: 62  TCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRMAWDFLTKEIGLSP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+++VY++D+EA+ +W+KI  L   +I+R+   DNFW+M +TGPCGPCSEI  DQGE 
Sbjct: 122 AKLWVSVYEDDDEAYAIWEKIEDLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGEA 181

Query: 183 I--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  P    G   + +R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+A V Q K
Sbjct: 182 VACPEENCGVDCDCDRFLEIWNLVFMQYERDEQGNLTPLPKPSIDTGMGLERIAAVAQGK 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            NNYD DLF+ +IQ + Q+ G+ Y  N   +   RVI DH R+++FL+ADG+LP+NEGRG
Sbjct: 242 INNYDSDLFQPIIQRTCQLAGISYGANLRADTALRVIADHARATTFLVADGVLPSNEGRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRIMRRA+ + R LG TEP +  +  A+   MGSA+  L +++ L+ + +R E+ERF
Sbjct: 302 YVLRRIMRRAVRFGRSLGLTEPFLGEVCSAVADGMGSAWGHLGESRELLGKVVRHEEERF 361

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD GL +L   +  L  + I  + GD  FKLYDT+G P+DI +D+    GL   D  
Sbjct: 362 LETLDHGLGMLASEIERLQGEGIKTIAGDFIFKLYDTYGFPVDIAKDVAQEEGLQA-DEE 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+  QR ++R    G G G     +  L E+   ++F+GY+  R            
Sbjct: 421 GFGAAMARQREQSRRSWKGGGLGELGPGFKELLERGVKSRFVGYETRRHH---------- 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        ++V  + Q+GE+ +EA +G  V +V D+TPFYAEAGGQ+GD G   G
Sbjct: 471 ------------GTLVAVLDQRGELHDEAAAGTLVSLVCDETPFYAEAGGQVGDWGEIAG 518

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              R ++ +  K  E + VH A V  G L     ++L +    RRQ + +H+ATHLLH A
Sbjct: 519 GQGRAKVLNTLKIGEHLVVHQAEVAEGKLAVGAEVLLAVAEGRRRQTAAHHTATHLLHAA 578

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +  + LRFD TH  P++  E++ +E+ VN+ I  N  +    + R
Sbjct: 579 LRRVLGEHVKQAGSLVDAERLRFDFTHFSPLSREEIRRVEELVNEEIRANTRLEVATLPR 638

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A+ SGAAAL G KY D VRVV+V     G  S  LCGGTHV +TGEI L  I SE  I
Sbjct: 639 EEALQSGAAALFGEKYGDTVRVVAV-----GDFSKELCGGTHVGATGEIGLFKITSEGGI 693

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            A  RRIE   G  A S +   +++++  A  LK +   +  R++++    ++L  QL  
Sbjct: 694 AASTRRIEGCCGGLALSRVHALEDEVQQWAGRLKTNPAELGVRLDKLLARQKELERQLAE 753

Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDS-KELKSVMDALQKKIQSGIIMLVGI 830
            A +  + + E +   +  +VN +       EVDS K L+   D L+ K+ SGI +L   
Sbjct: 754 LAAKASRFDAESV-LRQATEVNGIKVATCRLEVDSVKTLREAGDKLRDKMGSGIAVLAA- 811

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K S+L +V++DL DR+ A D+ + +A+++ GG GGGRP MAQ+GG +  K D A+A
Sbjct: 812 EPAGKVSLLALVSKDLTDRYRAGDIVKQAAQLV-GGSGGGRPDMAQAGGGDPEKIDHALA 870

Query: 891 GVASFLKK 898
            V   + +
Sbjct: 871 AVPGIVAE 878


>gi|197284276|ref|YP_002150148.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227357820|ref|ZP_03842168.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|194681763|emb|CAR40964.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227161930|gb|EEI46948.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 875

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/910 (43%), Positives = 551/910 (60%), Gaps = 56/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +   Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT +  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEVGVPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG+ EE G+RYIEIWN+VFMQF +++      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGTPEEDGDRYIEIWNIVFMQFNRKSDGTMDPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NYDIDLF+ LI++  +VT      N  +  RVI DH+RS SFL+ DG++P
Sbjct: 244 ITAVLQHVNSNYDIDLFRALIKSVAEVTNATDLANKSL--RVIADHIRSCSFLVCDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   M  A  EL   + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIDVMAEAGKELKNQQEIVEKVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L  L  D  L G+ AF+LYDT+G PLD+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLQLLDEELEKLTGD-TLAGETAFRLYDTYGFPLDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+   E I    +     + F GYD           
Sbjct: 420 VDEEGFELAMEEQRKRARESS-GFGTDYNELIKVDSR-----SDFSGYD----------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N     + AI   G+ V E  +G++  +  D+T FYAE+GGQ+GD G
Sbjct: 463 ------------HNEQQGTINAIFHNGQTVTELKAGEEGIIFLDKTAFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             IG   + ++TD QK  + I  H   V  G       +   ID   R  + +NHSATHL
Sbjct: 511 LLIGKDSQFEVTDTQKYGKAI-GHIGKVISGSFIVNHKINAVIDVARRDAIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +    LRFD +H + +   +L+ IED VN  I  N PVVT 
Sbjct: 570 LHAALRQVLGTHVTQKGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ EDA   GA AL G KY +RVRV+++     G  S+ LCGGTH + TG+I L  I+S
Sbjct: 630 LMDLEDAKQKGAMALFGEKYEERVRVLTM-----GDFSTELCGGTHAARTGDIGLFRIMS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEAITG  A   +  Q + +  +A  LK    N+V +++ + E+YR L+ 
Sbjct: 685 ESGTAAGIRRIEAITGATAIESVHEQSDLISLVAHALKSDGSNLVEKIKTVQEKYRSLEK 744

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S        +  +  +   ++ V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKDQQAAQESSSLGSQAKNVKGIKLLVRELNNVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             IS + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 STIS-DGKVSLIVGVTKDLTAKIKAGELISFVAQQI-GGKGGGRPDMAQAGGTDVEALPA 862

Query: 888 AIAGVASFLK 897
           A+A V  +++
Sbjct: 863 ALASVDEWVE 872


>gi|15603152|ref|NP_246224.1| alanyl-tRNA synthetase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431888|sp|P57933|SYA_PASMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|12721647|gb|AAK03371.1| AlaS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 874

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/915 (43%), Positives = 557/915 (60%), Gaps = 60/915 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHTKGHQIVASSALVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L   +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPAEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI    ++TG K   N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKDLSNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A   + + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIDVMAEAGIGVKEKQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++ K E L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDEALANVKKGE-LSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID + F++ +E QR RA++ S  G+      ++        G T F GY     S+ +
Sbjct: 418 T-IDEVGFDREMEAQRLRAQSASQFGMDYNNVIRV-------EGCTTFEGY---TASESL 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            +                    V A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 467 AK--------------------VTALFADGKPVERIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G   G G   ++ D QK  + +F H   +  G L    S+   +D + R   S+NHSA
Sbjct: 507 DSGYLNGQGFSFEVKDTQKYGQ-VFGHIGELVSGSLTVGKSVNAVVDVKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  I  N  +
Sbjct: 566 THLLHAALRQVLGEHVVQKGSLVSDVALRFDFAHHEAITKAQLVEIECLVNQQIRANHLI 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T +M  E A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTELMELEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I +E++I AGIRRIEAITG+ A S L  Q   L   A  LK    ++V +++++ ++ +K
Sbjct: 681 ITTETAIAAGIRRIEAITGENAMSWLHQQQALLAQSADLLKSDVNSIVEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ++  K  +Q    DL  S  KI DV+ +   +  VD+K L+ V+D L+ ++ S 
Sbjct: 741 AEKELQVLKEKSAMQAG-SDLARSAVKINDVSVIVQKLDGVDTKSLRVVVDDLKNQLSSA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+   +  E+K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG    
Sbjct: 800 VIVFASVV-EEKVNLIVGVTSDLTSKVKAGELVNLLAQQV-GGKGGGRPDMAMAGGTQIE 857

Query: 884 KADQAIAGVASFLKK 898
             D A++   ++LK+
Sbjct: 858 NVDHALSFATTWLKE 872


>gi|301169533|emb|CBW29134.1| alanyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 874

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/914 (43%), Positives = 554/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VTQAIKVAQDWLNK 872


>gi|217972432|ref|YP_002357183.1| alanyl-tRNA synthetase [Shewanella baltica OS223]
 gi|217497567|gb|ACK45760.1| alanyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 874

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/907 (43%), Positives = 561/907 (61%), Gaps = 56/907 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 5   TAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRATT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L + 
Sbjct: 65  AQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPKE 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 125 RLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEIF 184

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A 
Sbjct: 185 YDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           ++Q   +NY+ID+F+ LI  + ++ G+       +  RVI DH+RS +FLIADG++P+NE
Sbjct: 245 IMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSNE 302

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E+
Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEE 362

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D 
Sbjct: 363 EQFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VDE 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+ EQRSRA+A      +G     + +  +    T F GY  L G          
Sbjct: 421 AGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG---------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  +
Sbjct: 465 -------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLV 511

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH 
Sbjct: 512 ANGVEFTVNDTQKYGQATG-HQGVLATGSLSVGQVVEAKVDKKLRHRTQLNHSVTHLLHA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M 
Sbjct: 571 ALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEMG 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+ 
Sbjct: 631 IDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEAG 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   A
Sbjct: 686 IAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEMA 745

Query: 776 KRKLQLNV---EDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L      DL    I    VN +   +  V++  L+ + D L++K++S II+L G 
Sbjct: 746 QLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-GT 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D A+
Sbjct: 805 AQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFL 896
           A V  ++
Sbjct: 863 AQVLPWI 869


>gi|78221425|ref|YP_383172.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|123572914|sp|Q39Z77|SYA_GEOMG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78192680|gb|ABB30447.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 876

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/903 (41%), Positives = 547/903 (60%), Gaps = 42/903 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH ++PSS LIP NDPTL+F N+GM  FK+ F G E   Y   T+ 
Sbjct: 4   NELRARFLKFFEDRGHTVVPSSLLIPHNDPTLLFANAGMNQFKDCFLGMEDRGYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD+ R
Sbjct: 64  QKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDKDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPCSEIF+D G  + 
Sbjct: 124 LYVTVYTDDDEAADIWHHQEGVPRERIFRFGEKDNFWSMGDTGPCGPCSEIFWDNGPEVG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER+ TV+Q   +
Sbjct: 184 CGSPDCTVGCDCDRYMEIWNNVFMQFNRSADGTMTPLPKPSVDTGMGLERICTVMQGVKS 243

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DL + +I+  E+++G +Y  N  + V+ RVI DH R+++FLI DG+LP+NEGRGYV
Sbjct: 244 NYDTDLLQGVIRHVERLSGKRYRENEKDDVSMRVIADHARATTFLICDGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA  +A++LG+ EP++   + A+   MG +YPEL++ +  I++ +R+E+ERF +
Sbjct: 304 LRRIMRRAARHAKMLGFAEPVLYRTVDAVNEMMGGSYPELLEREEYIKKVIRAEEERFAE 363

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLDRGL +L+  ++ L  +   ++ G+  F+LYDT G P D+  DI+ A G   ID   F
Sbjct: 364 TLDRGLAILNDAVAQLKGEGKTVIPGETLFRLYDTFGFPTDLTADIVRAEGFT-IDEPGF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              +  QR +AR H  G G      +   L  +   + F+GYD                 
Sbjct: 423 EACMGRQREQAREHWKGSGEEGIAAVHKELHNRGVRSVFVGYD----------------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + + +I++ G  V EA +G+ VE++ D+TPFY E+GGQ GDTG      
Sbjct: 466 ------EKCSYAAIGSILRGGSEVAEAKAGEDVEIITDRTPFYGESGGQAGDTGTISTGS 519

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++T   +    + VH   V  G ++T  +  L +   +R   + NH+ATHLL  AL 
Sbjct: 520 AHVRVTGTIRPYPDLIVHRGTVVEGTIKTGEACDLKVASVDRDATARNHTATHLLQTALR 579

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS + PD LRFD TH   +T  E++ +E+ VN  I +N  V  R M  E+
Sbjct: 580 RVLGEHVKQAGSLVAPDRLRFDFTHFAAMTPEEIRRVEEIVNTFIMENDTVHAREMAVEE 639

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ SGA AL G KY DRVRVV V     G  S+ LCGGTHV + G+I    I+SE+ I A
Sbjct: 640 AMESGATALFGEKYGDRVRVVKV-----GEVSAELCGGTHVRAAGDIGSFKILSEAGIAA 694

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A  H+   +++ + +A+ +K   G+ + R++++    R++Q      +
Sbjct: 695 GVRRIEALTGMGALRHIQELEDEKRQIAALMKAEGGDNIDRLQKLLARQREMQREIETLQ 754

Query: 779 LQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            QLN     DL     ++  V  ++  +   D K+L+ + D L+ ++ SG++ L G  K+
Sbjct: 755 GQLNAAKSGDLLADVREVNGVKVLATKVEVDDPKKLRELADTLKDRLGSGVVAL-GCEKD 813

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            +A++L+ VT+DL  R  A D+ R  A V+ GG GGG+P +AQ+GG   +   +A+  V 
Sbjct: 814 GRANLLVAVTKDLAGRIRAGDIIRQLAPVI-GGSGGGKPELAQAGGSQPDMLAEALGKVY 872

Query: 894 SFL 896
             +
Sbjct: 873 GLI 875


>gi|170727677|ref|YP_001761703.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|205830209|sp|B1KPS5|SYA_SHEWM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169813024|gb|ACA87608.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 874

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/910 (42%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAISFAWNFLTQELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF +W K  G+ A+ +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAFDIWTKEIGVPAESLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+    N  +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTDLENKSL--RVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      L+P L   MG A   L++ + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVETQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L K ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNEL-KGDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G  +  +    +    T F GY              
Sbjct: 420 EAGFEVAMAEQRSRAQA------AGQFDTDYNDSLKIDEETHFSGY-------------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                   +LT      V AI + GE  +   +G+   +V D TPFY E+GGQ GD G  
Sbjct: 460 -------TELT--AQGKVTAIYKAGESTDSLNAGEDAVIVLDSTPFYGESGGQCGDKGLL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G+   + D QK  + +  H   V  G +    +L   +D + R +  +NHS THLLH
Sbjct: 511 TAKGVEFDVKDTQKYGQAVG-HQGTVNSGSISVGDTLEAIVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS +  + LRFD +H + +   ELK++ED VN  I +N  +   +M
Sbjct: 570 AALRQLLGTHVTQKGSLVDAERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSADVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DMDQAKERGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            I AG+RRIEA+TG  A +++  Q  +L   A+ LK    +VV +++   +  + L  +L
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAAQKAELDQAAALLKADSNSVVTKLKAQLDRTKLLEKEL 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL          +   VN    +I +   VD+  L+ + D L++K+ SG+++L  
Sbjct: 745 SQLKDKLAAATSADLAGEAKQVNGAKVLIKKLEGVDAGALRGLQDELKQKLGSGVVVLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I+ E K ++++ VT+DL  +  A +L A ++A+V  GG GGGRP MAQ+GG    K D A
Sbjct: 804 IAGEAKVNLIVGVTKDLTAKVKAGELVASIAAQV--GGKGGGRPDMAQAGGTEPEKLDGA 861

Query: 889 IAGVASFLKK 898
           +  V  +L++
Sbjct: 862 LEQVLPWLEE 871


>gi|91784488|ref|YP_559694.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|122970272|sp|Q13W97|SYA_BURXL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91688442|gb|ABE31642.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 874

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/910 (42%), Positives = 548/910 (60%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L +
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 DKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQALIKAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        ++  L  +MG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKEAEQRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+G L+ L  G  + L+G++AFKL+DT+G PLD+  D+ C      
Sbjct: 360 EERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F++A+  QR +ARA           K+   L+     T F GYD     + + +D
Sbjct: 419 VDEAAFDEAMTRQREQARA-------AGKFKMAQGLEYSGEKTTFHGYD-----EVVFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V++A  GQ+  VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVI-----------------ALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                 +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + R
Sbjct: 570 MHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 630 VMSFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D       ++  V+ ++  +   D K L+  +D L+ K++S  I+L
Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 804 ASV-EGGKVSLIAGVTADASRKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|304410155|ref|ZP_07391774.1| alanyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302134|ref|ZP_07581892.1| alanyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304351564|gb|EFM15963.1| alanyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914172|gb|EFN44593.1| alanyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 874

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/906 (43%), Positives = 560/906 (61%), Gaps = 56/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 6   AELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRATTA 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L + R
Sbjct: 66  QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEIF+
Sbjct: 126 LCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEIFY 185

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A +
Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+ID+F+ LI  + ++ G+       +  RVI DH+RS +FLIADG++P+NEG
Sbjct: 246 MQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSNEG 303

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E+E
Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEEE 363

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D  
Sbjct: 364 QFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VDEA 421

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ EQRSRA+A      +G     + +  +    T F GY  L G           
Sbjct: 422 GFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG----------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  + 
Sbjct: 465 ------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLVA 512

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH A
Sbjct: 513 SGVEFTVNDTQKYGQATG-HQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLHAA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M  
Sbjct: 572 LRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEMGI 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+ I
Sbjct: 632 DEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEAGI 686

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   A+
Sbjct: 687 AAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEMAQ 746

Query: 777 RKLQLNV---EDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L      DL    I    VN +   +  V++  L+ + D L++K++S II+L G +
Sbjct: 747 LKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-GTA 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D A+A
Sbjct: 806 QEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAALA 863

Query: 891 GVASFL 896
            V  ++
Sbjct: 864 QVLPWI 869


>gi|258623515|ref|ZP_05718516.1| alanyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258584177|gb|EEW08925.1| alanyl-tRNA synthetase [Vibrio mimicus VM573]
          Length = 860

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/907 (43%), Positives = 548/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DETGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATHLL
Sbjct: 511 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  ++  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 IA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|296158159|ref|ZP_06840991.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295891495|gb|EFG71281.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 874

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/910 (42%), Positives = 547/910 (60%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L +
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 DKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQALIKAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        ++  L  +MG+AYPEL  A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKDAEQRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+G L+ L  G  + L+G++AFKL+DT+G PLD+  D+ C      
Sbjct: 360 EERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F++A+  QR +ARA           K+   L+     T F GYD     + + +D
Sbjct: 419 VDEAAFDEAMTRQREQARA-------AGKFKMAQGLEYSGEKTTFHGYD-----EIVFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V++A  GQ+  VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVI-----------------ALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                 +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + R
Sbjct: 570 MHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 630 VMSFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D       ++  V+ ++  +   D K L+  +D L+ K++S  I+L
Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|262372182|ref|ZP_06065461.1| alanyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262312207|gb|EEY93292.1| alanyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 884

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/918 (44%), Positives = 541/918 (58%), Gaps = 68/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 11  AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AWD LT E    L +
Sbjct: 71  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWDFLTNEQWLALPK 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 131 DRLYVTVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 190

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 191 FYDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERIS 250

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 251 AVLQHVNSNYEIDLFQHLLKAAANIIGIQDEGQPSL--RVLADHARSCCFLIADGVNPSN 308

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL  E
Sbjct: 309 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLVEVMGEAYPELASRKDVIEATLLRE 368

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+  L+ L KD ++ G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 369 EEQFAKTLEQGLKLLEAELAQL-KDTVIPGATVFKLYDTYGFPTDLTADIARERGFT-ID 426

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + S+ +  G TQF GY              
Sbjct: 427 ETGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                   D T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 467 --------DATQGQGQIV-AIYKDGTQVDEINEGDEALIVLNQTPFYAESGGQIGDTGIF 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D    ++ D  KK+ G FVH  IV  G L+   ++  T+    R   + NHSATHLLH
Sbjct: 518 KNDTGIFEVQDT-KKSGGAFVHQGIVTMGSLKATQNVEATVKADIRAATARNHSATHLLH 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV T ++
Sbjct: 577 AALRQILGDHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLVNAEVIANTPVTTELL 636

Query: 655 NREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           + E A A GA  L G KY + VRV+S    +E ++    S  LCGG HV  TG+I L  I
Sbjct: 637 DIESAKAKGAMMLFGEKYGEEVRVLSMGSIIEEKN---FSIELCGGIHVKRTGDIGLFKI 693

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++++   LK  +   V +VE I E    L
Sbjct: 694 TSEGGVAAGVRRIEAVTGTKALEAVQKADSDIQTINGLLKAQKDQTVEKVEAIVETASSL 753

Query: 771 QLIHAKRKLQLNVEDLSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKI 820
           Q    K+  QLN + L+  + AD+            +   +  +D+K L+++ D+++ K+
Sbjct: 754 Q----KQIEQLN-QKLASFQAADLLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKL 808

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +  +I+L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P
Sbjct: 809 EDAVIILAGVEGD-KVSLIASVAKQYAANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAP 866

Query: 881 NGNKADQAIAGVASFLKK 898
              K DQ  A + ++L++
Sbjct: 867 LNEKFDQVFAALPAWLEQ 884


>gi|205830049|sp|Q39HB7|SYA_BURS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+G L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KIV-----------------ALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS +G+I    IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRSGDIGFFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   I  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AV-ESGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|28869047|ref|NP_791666.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|37999391|sp|Q885J0|SYA_PSESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28852287|gb|AAO55361.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 874

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/911 (43%), Positives = 547/911 (60%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+LP++
Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  LR E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ + G+ V    +G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNAGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSATHLL
Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|148828002|ref|YP_001292755.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|205830061|sp|A5UHW6|SYA_HAEIG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148719244|gb|ABR00372.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 874

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/914 (42%), Positives = 554/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  +KK ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|113969471|ref|YP_733264.1| alanyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130634|sp|Q0HL60|SYA_SHESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113884155|gb|ABI38207.1| alanyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 874

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/908 (42%), Positives = 558/908 (61%), Gaps = 60/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 6   AALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRATTA 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L + R
Sbjct: 66  QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 126 LCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 185

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A +
Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+NEG
Sbjct: 246 MQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSNEG 303

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E+E
Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAEEE 363

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +TL+RGL +LD  L+ L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D  
Sbjct: 364 QFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VDEA 421

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ EQRSRA+A      +G     + +  +    T F GY  L G           
Sbjct: 422 GFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG----------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  + 
Sbjct: 465 ------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVLVA 512

Query: 537 DGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GI   ++D QK  +A G   H   +  G L     L   +D + R +  +NHS THLLH
Sbjct: 513 QGIEFAVSDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+  +
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829
              K KL              VN ++ +I ++D  E   L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLACDAVVVNGVNVLIKKLDGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D A
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAA 861

Query: 889 IAGVASFL 896
           ++ V  ++
Sbjct: 862 LSQVLPWI 869


>gi|78066024|ref|YP_368793.1| alanyl-tRNA synthetase [Burkholderia sp. 383]
 gi|77966769|gb|ABB08149.1| alanyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 897

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 26  AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 85

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 86  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 145

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 146 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 205

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 206 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 265

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 266 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 323

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR E+
Sbjct: 324 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 383

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+G L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 384 ERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 442

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 443 DEPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDA 490

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 491 KIV-----------------ALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 533

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATHL+
Sbjct: 534 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 593

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 594 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 653

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS +G+I    IV E
Sbjct: 654 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRSGDIGFFKIVVE 707

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 708 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 767

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   I  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 768 LGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 827

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 828 AV-ESGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 885

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 886 LAGVKGWVEE 895


>gi|115351339|ref|YP_773178.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323447|sp|Q0BG79|SYA_BURCM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115281327|gb|ABI86844.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD]
          Length = 874

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/910 (42%), Positives = 543/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I    IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|205830256|sp|A4XWE2|SYA_PSEMY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/911 (45%), Positives = 557/911 (61%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+++W K  G+ A+++IRI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ AS +  G   EG    + +V+ DH+RS SFLIADG+ P+N
Sbjct: 244 AVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGVTPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ GD+ FKLYDT+G P+D+  DI   R L+ +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLAGL-QGSVIPGDIVFKLYDTYGFPVDLTADIARERELS-VD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A + G+      K+          T+F+GY             
Sbjct: 420 EEGFEREMEAQRERARSASAFGMDYNALVKV-------DADTRFLGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    + T+G   I+ A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD G 
Sbjct: 460 ---------EGTSGSGKII-ALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDCGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G F+HH +V +G L    S+    +   R+  ++NHSATHLL
Sbjct: 510 LESAGMRFDVRDT-TKAGGAFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +LK +ED VN  I +N  V T  
Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I SE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A + L   +E+LK  AS +K S+ NV+ ++  + E  R+L  +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLEKE 744

Query: 772 LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K       DL  S   +     ++  +  +D K L +++D L+ K+ SG+I+L 
Sbjct: 745 LEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVILLG 804

Query: 829 GISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G+  EK   VL+  VT+DL  +  A DL R  A    GG GGGRP MAQ GG +  K D+
Sbjct: 805 GVFDEK--VVLVAGVTQDLTAKLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGVDAGKLDE 861

Query: 888 AIAGVASFLKK 898
           A+A  A+F+++
Sbjct: 862 ALALAATFVEQ 872


>gi|238791374|ref|ZP_04635013.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238729507|gb|EEQ21022.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 875

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/912 (44%), Positives = 565/912 (61%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A  Q TG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAQATGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL Q + ++E  L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEHVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+     I         A+QF GYD +         
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNMIRVD-----SASQFSGYDHVH-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E  +G++  VV +QTPFY E+GGQ+GD G
Sbjct: 466 ---------------QQATVTALFRNGEAVDEINAGEEAVVVLNQTPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   + +G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFAVADTQKYGQAI-GHLGQLTQGTLRVNHSIDAQVDVARRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLPV T 
Sbjct: 570 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+S
Sbjct: 630 VMELDTAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L  +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQTDLLADVAHLVKGDSHNLADKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +    S  K+  +N +  ++S++D+ E   L++++D L+ ++ S II
Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L   + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG +   
Sbjct: 803 VLA-TTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859

Query: 885 ADQAIAGVASFL 896
              A+AGV +++
Sbjct: 860 LPSALAGVEAWV 871


>gi|251793474|ref|YP_003008203.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247534870|gb|ACS98116.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 874

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/914 (43%), Positives = 558/914 (61%), Gaps = 60/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ DEEA+K+W    G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDEEAYKIWHDEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLNNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  ++ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEDVKKHQATVEKF 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++ KD +L+G VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANV-KDNVLSGKVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A ID   F + +  QR RA++ S  G+      ++        G T+F GY         
Sbjct: 418 A-IDEAGFEREMASQRVRAQSASQFGMDYNNVIRV-------DGTTRFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + + L +             V A+   G+ VE   +GQ+  V+ + TPFYAE+GGQ+G
Sbjct: 461 -TESESLAK-------------VTALFHDGKAVESITAGQRAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   G+G    + D QK  + +F H   + +G L    S+   +D   R+Q+S+NHSA
Sbjct: 507 DIGRLEGNGFIFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDDVRRQQISLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS ++   LRFD  H + I+  +L  +E  VN  +  N PV
Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDALLRFDFAHHEAISKEQLAEVERIVNQQVRANNPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T  M  + A A GA AL G KY+++VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTEAMALDAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K
Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSADLLKSDVNSITDKISLLQDKFKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K  LQ    DL  S  KI  V+ +   +  +++K L+S++D+L+ ++ S 
Sbjct: 741 VEKELQTLKEKAALQAG-NDLAQSAVKIHGVSVIVQQLDGIEAKSLRSMVDSLKNQLGSV 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I++   +  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG    
Sbjct: 800 IVVFASVLDE-KVNLIVGVTGDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPQ 857

Query: 884 KADQAIAGVASFLK 897
              +A++  + +LK
Sbjct: 858 NIGKALSVCSDWLK 871


>gi|296104368|ref|YP_003614514.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058827|gb|ADF63565.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 875

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/909 (44%), Positives = 569/909 (62%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF  LI+A  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RAR  S G G+     I         A++F GY+ L         
Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYEALE-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          ++  V A+   G+ V+   +GQ   V+ D+TPFYAE+GGQ+GD G
Sbjct: 466 ---------------LTGKVTALFVDGKAVDSISAGQDAVVILDKTPFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G    + D QK  + I  H   +  G L+    +   +D   R ++ +NHSATHL
Sbjct: 511 ELQGNGFSFSVNDTQKYGQAIG-HLGKLVSGSLKVGEGVQANVDEARRARIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T 
Sbjct: 570 MHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIETH 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A   GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IVS
Sbjct: 630 IMDLDAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAQSDQLHDIAQLLKGDTQNLGEKVRVALDRTRQLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+  +  ++S+   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPA 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|172060378|ref|YP_001808030.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|205829999|sp|B1YNJ6|SYA_BURA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171992895|gb|ACB63814.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 874

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVVGHHGTLEQGTLKLGDVLRAEIDAHRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I    IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D       ++  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +      A
Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|302132483|ref|ZP_07258473.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 874

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/911 (43%), Positives = 546/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+LP++
Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  LR E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSATHLL
Sbjct: 510 LLAGDTRFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|331017460|gb|EGH97516.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 874

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/911 (43%), Positives = 546/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+LP++
Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  LR E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSATHLL
Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|237748703|ref|ZP_04579183.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229380065|gb|EEO30156.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/907 (43%), Positives = 551/907 (60%), Gaps = 56/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH ++ SSSL+P NDPTLM TN+GMV FK++F G +K  Y   T+V
Sbjct: 11  AEIRQKFLSFFEAKGHTIVRSSSLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRATSV 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L   +
Sbjct: 71  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPADK 130

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L+ TVY ED+EA+ +W    GL  ++I+RI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 131 LWATVYYEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 190

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LP   +DTGMGLER+A V
Sbjct: 191 DHGPDVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERLAAV 250

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ + TG     NN +  +VI DH+R++SF+I DG++P ++G
Sbjct: 251 LQHVHSNYEIDLFQNLIKAAARETGTTDLTNNSL--KVIADHIRATSFMIVDGLIPGSDG 308

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
            GYVLRRI+RRA+ +   LG T+P    L+  L  EMG+AYPEL++A   ++  LR E+E
Sbjct: 309 HGYVLRRIIRRALRHGYKLGQTKPFFYKLVEDLVKEMGAAYPELVEAAGYVQRVLRHEEE 368

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TLD G+ +L+  L+      +LNG+ AF LYDT+G PLD+  DI   R +  +D  
Sbjct: 369 RFGETLDNGMKILESALTD--SSTVLNGETAFTLYDTYGFPLDLTADICRERNMT-VDEA 425

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+E+QR+ ARA      SG   K+  +L+     TQF+GY+ L             
Sbjct: 426 GFDVAMEKQRATARA------SGKF-KMAAALEYHGEKTQFVGYERLE------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      V ++V AI + G  V++  +GQ   +V D TPFYAE+GGQ+GD G  +G
Sbjct: 467 ----------EVGTVV-AIYRDGTPVDKIETGQNGVIVLDTTPFYAESGGQVGDVGTLVG 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+R  + D QK    +  HH  +  G +     L   ++ + R Q   NHS THL+H A
Sbjct: 516 NGVRFDVEDTQKIQADVAGHHGKLVNGTITIGDKLDGRVNMEMRAQTMRNHSVTHLMHKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV+Q GS + P+  RFD +H+ PIT  E++ +E+ VN  I  N P  T  M+ 
Sbjct: 576 LRQVLGSHVAQRGSLVDPEKTRFDFSHNAPITDDEIRQVEEIVNREIVANNPTETHQMSF 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++AIA GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I    +VSE  +
Sbjct: 636 DEAIAHGATALFGEKYGDVVRVLDIGF------SCELCGGTHVSRTGDIGFFKVVSEGGV 689

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AGIRRIEA+TG  A   +     K+   AS LK     +V R+ ++ +  + L  +L  
Sbjct: 690 AAGIRRIEAVTGLVAMQWVQDMARKVGEAASALKTQPDELVNRIVQVQDHIKGLDRELST 749

Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K   +  D    K  D   V  ++ +I   D   L+S MD L+ K+++  I+L  ++
Sbjct: 750 LKAKFASSQGDDLADKATDIKGVKVLAAMIEGADVSGLRSTMDKLKDKLKTAAIVLAAVN 809

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K S++  VT D+  +  A +L    AK + GG GGGRP MA +GG + +  D A+  
Sbjct: 810 -DGKVSLIAGVTSDMTSKLKASELVNHVAKQV-GGKGGGRPDMAAAGGTDPSGLDGALNS 867

Query: 892 VASFLKK 898
           V  ++++
Sbjct: 868 VGGWVQE 874


>gi|160876373|ref|YP_001555689.1| alanyl-tRNA synthetase [Shewanella baltica OS195]
 gi|205830203|sp|A9KYF8|SYA_SHEB9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160861895|gb|ABX50429.1| alanyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315268563|gb|ADT95416.1| alanyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 874

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/907 (43%), Positives = 560/907 (61%), Gaps = 58/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 6   AELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRATTA 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L + R
Sbjct: 66  QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEIF+
Sbjct: 126 LCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEIFY 185

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A +
Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+ID+F+ LI  + ++ G+       +  RVI DH+RS +FLIADG++P+NEG
Sbjct: 246 MQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSNEG 303

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E+E
Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEEE 363

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D  
Sbjct: 364 QFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VDEA 421

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ EQRSRA+A      +G     + +  +    T F GY  L G           
Sbjct: 422 GFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG----------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  + 
Sbjct: 465 ------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLVA 512

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH A
Sbjct: 513 NGVEFTVNDTQKYGQATG-HQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLHAA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  + T  M  
Sbjct: 572 LRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKATELKEVEELVNTQIRRNHELKTAEMGI 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+ I
Sbjct: 632 DEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEAGI 686

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   A+
Sbjct: 687 AAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEMAQ 746

Query: 777 RKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            K +L     S   + D      VN +   +  V++  L+ + D L++K++S II+L G 
Sbjct: 747 LKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-GT 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D A+
Sbjct: 805 AQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFL 896
           A V  ++
Sbjct: 863 AQVLPWI 869


>gi|327480000|gb|AEA83310.1| alanyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 874

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/910 (45%), Positives = 555/910 (60%), Gaps = 57/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ A+    G   EG    + +V+ DH+RS  FLIADG+ P+N
Sbjct: 244 AVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGVTPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVLKNE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLAGLAG-SVIPGEVVFKLYDTYGFPVDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +  G T+FIGY    GS       
Sbjct: 420 EEGFEREMQAQRERARSASAFGMD-------YNSLVKVEGETRFIGYQGTSGSG------ 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KVL                 A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD G 
Sbjct: 467 KVL-----------------ALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDCGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G F+HH IV+ G L T   +  T+D   R+  ++NHSATHLL
Sbjct: 510 LEAQGLRFDVRDT-SKAGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V    
Sbjct: 569 HAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEIEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I SE
Sbjct: 629 TDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L  +
Sbjct: 685 GGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K      +       +VN +  + +    +D K L +++D L+ K+ S +I+L 
Sbjct: 745 LEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVILLG 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+ ++ K  ++  VT+DL  R  A DL R  A    GG GGGRP MAQ GG +  K D+A
Sbjct: 805 GV-QDDKVVLVAGVTQDLTSRLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGTDAAKLDEA 862

Query: 889 IAGVASFLKK 898
           +A    F ++
Sbjct: 863 LALALPFAQQ 872


>gi|68249409|ref|YP_248521.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81336165|sp|Q4QM86|SYA_HAEI8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68057608|gb|AAX87861.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 874

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/914 (43%), Positives = 553/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE    GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEVGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|260581631|ref|ZP_05849428.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260095224|gb|EEW79115.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 874

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/914 (42%), Positives = 555/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P +   M  A  ++   ++ +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTIIDVMAEAGKDVKAKQVNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLNLLDEALAQV-KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+T Q A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTAQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|116878605|ref|YP_357817.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123756582|sp|Q3A1W0|SYA_PELCD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114843241|gb|ABA89647.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 882

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/904 (43%), Positives = 552/904 (61%), Gaps = 52/904 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR+ FL+FFQ +GH ++PSS+LIP NDPTL+F N+GM  FK++F G+EK  Y   T+ 
Sbjct: 4   NEIRSRFLKFFQDHGHTVVPSSALIPHNDPTLLFINAGMNQFKDVFLGREKRDYVRATSA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI  AW  LT+E  L + +
Sbjct: 64  QKCVRAGGKHNDLENVGQTARHHTFFEMLGNFSFGDYFKKEAIDHAWKFLTEEMGLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+ ED+EA+ +W+   G+  +++IR+   DNFWSM +TGPCGPCSEI  DQGE + 
Sbjct: 124 LWVTVFREDDEAYDIWRDQQGIPEERLIRMGEKDNFWSMGDTGPCGPCSEILIDQGESMS 183

Query: 185 GGLPGSSEEG------ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G     E G      +RY+E+WNLVFMQF +        LPK SIDTGMGLER+  V+Q
Sbjct: 184 CG----DECGIGKCDCDRYLELWNLVFMQFNRDADGTMTPLPKPSIDTGMGLERITAVMQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANE 295
              +NYD DL + +I   E+++G +Y G+N    ++ RVI DH R+++FLIADG+LP+NE
Sbjct: 240 GVQSNYDCDLLRGIIAHVEELSGKRY-GDNAEHDMSMRVIADHSRATAFLIADGVLPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRIMRRA  +A++LG+ +P++      +   M  AYPE  Q    + + ++ E+
Sbjct: 299 GRGYVLRRIMRRAARHAKMLGFADPVLYRTATFVLQSMAEAYPEPAQRADYVAKIVKIEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TLD GL +L   +  L      +L GDVAFKLYDT G PLD+  DIL    +  I
Sbjct: 359 ERFIQTLDNGLRILTEEVERLKAANATVLPGDVAFKLYDTFGFPLDLTADILRGENVT-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +EEQR +AR H  G G      I+  L E+   T F GY  L G        
Sbjct: 418 DEDGFEACMEEQRQKAREHWKGSGEEAISGIYRQLAEEGARTDFTGYGELTG-------- 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + AI+  G+ V  A +G KVE+V   TPFY E+GGQ GD G 
Sbjct: 470 ---------------QSEILAILLDGQPVSSAPAGAKVEIVTAATPFYGESGGQTGDCGT 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + ITD +K    +FVH   +  G L+T  +  LT+D + R+  ++NH+ATHLL
Sbjct: 515 LAAGDAEVTITDTKKPLPELFVHVGEIAAGTLQTGETATLTVDRERRQATALNHTATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS +TP+ LRFD  H   +++ EL+ +E  VN  I +N  V TR 
Sbjct: 575 QAALVEVLGEHVKQAGSLVTPERLRFDFIHFSAMSAEELERVETLVNCRIRENAGVDTRE 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A+A GA AL G KY D+VRVV V     G  S  LCGGTH +++G+I L  I+ E
Sbjct: 635 MDHEQAVAEGATALFGEKYGDKVRVVRV-----GDISMELCGGTHANASGDIGLFKILQE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AG+RRIEA+TG +A   +  Q+  L  LAS +K  +  +  R+ ++ E  ++L+  
Sbjct: 690 TGIAAGVRRIEAVTGAKALQVVRDQERTLDDLASLIKTDRPQLEARLRKLLERQKELERE 749

Query: 774 HAKRKLQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + +LN +   DL     +I  ++ +   +  +D K L+ + D ++ ++ SG+++L 
Sbjct: 750 IESLQGKLNADQAGDLLQQATEIDGISVVCGRVDNLDGKALRELADQVRDRLSSGVLIL- 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G + E KA +L+ VT+DL  R  A  L +  A ++ GGGGGGRP +AQ+GG    + D+A
Sbjct: 809 GSAHEGKAGLLVAVTKDLTKRLQAGALVKQLAAMV-GGGGGGRPDLAQAGGSKPEQLDEA 867

Query: 889 IAGV 892
           +A V
Sbjct: 868 LASV 871


>gi|171321470|ref|ZP_02910415.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171093253|gb|EDT38456.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 874

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/909 (42%), Positives = 542/909 (59%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I    IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A   +   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRFVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D       ++  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +      A
Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPGA 862

Query: 889 IAGVASFLK 897
           +AGV  +++
Sbjct: 863 LAGVKGWVE 871


>gi|153001637|ref|YP_001367318.1| alanyl-tRNA synthetase [Shewanella baltica OS185]
 gi|205830202|sp|A6WR16|SYA_SHEB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151366255|gb|ABS09255.1| alanyl-tRNA synthetase [Shewanella baltica OS185]
          Length = 874

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/909 (43%), Positives = 561/909 (61%), Gaps = 58/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+       +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDTALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFTGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI   GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYLNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQATG-HQGVLATGSLSVGQVIEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A+ K +L     S   + D      VN +   +  V++  L+ + D L++K++S II+L 
Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL- 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G ++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D 
Sbjct: 803 GTTQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 861 ALAQVLPWI 869


>gi|330863734|emb|CBX73834.1| alanyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 875

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/912 (44%), Positives = 566/912 (62%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A  +VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+     I         A+QF GYD +         
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRVD-----SASQFSGYDHVH-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDTG
Sbjct: 466 ---------------QQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +  G LR   S+   ID   R ++ +NHSATHL
Sbjct: 511 ELKNATATFAVADTQKYGQAI-GHLGQLAHGTLRVNHSIDAQIDAARRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+S
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +    S  K+  VN +  ++S++D+ E   L++++D L+ ++ S II
Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  I+ + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG N   
Sbjct: 803 VLATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTNVQA 859

Query: 885 ADQAIAGVASFL 896
              A+A V +++
Sbjct: 860 LPSALASVEAWV 871


>gi|311694210|gb|ADP97083.1| alanyl-tRNA synthetase, class IIc [marine bacterium HP15]
          Length = 876

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/912 (43%), Positives = 565/912 (61%), Gaps = 58/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL++F++ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   T+
Sbjct: 3   TAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREERDYTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L 
Sbjct: 63  SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWTFLTGENWLNLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q +L++TVY ED+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 QEKLWVTVYAEDDEAFDIWNKEIGVPADRIVRIGDNKGGRYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS EE G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLER+
Sbjct: 183 IFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLKLPKPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
             VLQ   +NY+IDLF+ L+ A+ Q+ G         + RV+ DH+RS +FLIADG++P+
Sbjct: 243 TAVLQGVHSNYEIDLFQDLLAAASQILGGA--ATTEASLRVVADHIRSCAFLIADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRG+VLRRI+RRA  +   LG T P    L  ALC  MG A+P+L+ ++  IE+ L  
Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGATGPFFYKLTGALCELMGEAFPQLVSSRKQIEKVLLQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD+GL LL+  ++ L   EI  G+  F LYDT+G P+D+  DI   RGL  +
Sbjct: 361 EEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETIFTLYDTYGFPVDLTNDIARERGLT-L 418

Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   + +A+E QR RARA S  G+           L+   G T+F GY+ + G +     
Sbjct: 419 DYEGYEKAMEGQRERARAASKFGIDYNAA---GLQLE---GKTEFTGYEHIDGHE----- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              ++A++  GE  + A +G +  VV ++TPFYAE+GGQ+GDTG
Sbjct: 468 ------------------KIRAVIVNGE-EKTAEAGDEAVVVLERTPFYAESGGQVGDTG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G R ++TD +K+ +   +H   +  G L   + +   ID+  R +   NHSATHL
Sbjct: 509 LLTWSGGRFKVTDTRKEGDN-HLHLGTLIEGELFPGLEVDARIDHARRERTKRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS + PD LRFD +H + +T  +L+ IE  VN+ I +N PV T 
Sbjct: 568 LHAALRKVLGEHVSQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILENSPVQTE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I + E A   GA AL G KY D VRV+S+  ++   +S  LCGGTHVS TG+I L  I S
Sbjct: 628 ITDMEKAQEKGAMALFGEKYGDVVRVLSMGTDN---YSVELCGGTHVSRTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES I +G+RRIEA+TG  A   + G +  L+  A  +K S+ +V+ +V++  +  R+L  
Sbjct: 685 ESGISSGVRRIEAVTGMGALDWIDGTERTLREAARLVKGSRESVIEKVQQTIDRNRQLEK 744

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIML 827
           ++   K KL  +          DV  +  + SE++  + K++M   D L+ K+  G+++L
Sbjct: 745 EVDALKAKLASSAGTDLASTAVDVGGLKVVASELEGADRKALMETADQLKNKLGEGVVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + ++ K +++  VT+    R  A DL + L+A+V   G GGGRP MAQ GG + +K +
Sbjct: 805 ASV-EDGKVTLVAGVTKSATGRIKAGDLMKHLAAQV--DGKGGGRPDMAQGGGNDPSKLE 861

Query: 887 QAIAGVASFLKK 898
            A+AGVA +++K
Sbjct: 862 DALAGVAGWVEK 873


>gi|284007755|emb|CBA73582.1| alanyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 899

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/909 (43%), Positives = 547/909 (60%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GHE++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 27  STAEIRQAFLDFFHTKGHEIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 86

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E  F+L
Sbjct: 87  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEQWFNL 146

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY  DE A+K+W++  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 147 PKERLWVTVYHTDEAAYKIWQQEIGIPIERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 206

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q+      LP  S+DTGMGLER
Sbjct: 207 EIFYDHGEHILGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGSLKALPTPSVDTGMGLER 266

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI +  +   +    N  +  RVI DH+RSS+FLI DG+ P
Sbjct: 267 IAAVLQHVNSNYEIDLFRQLIASIAKAVALSDLNNKSL--RVIADHIRSSAFLIGDGVFP 324

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           ANEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG    EL   +  IE+TL+
Sbjct: 325 ANEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVAPLIQVMGDTADELKSHQATIEKTLK 384

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL RGL LLD  L+ L  D  L G++AF+LYDT+G P D+  D+   R +  
Sbjct: 385 NEEEQFARTLARGLQLLDDELAQLQGD-TLAGEIAFRLYDTYGFPFDLTADVCRERNIK- 442

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   FN A+E+QR RAR  S G  +   + I          + F GY+           
Sbjct: 443 VDEAGFNAAMEQQRYRARESS-GFATDYNDVIKVD-----SHSDFSGYE----------- 485

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V AI   G+ V     G++  ++ D+T FYAE+GGQ+GD+G
Sbjct: 486 ------------NNNQQATVIAIFHHGKSVNVLNQGEEGIIILDKTSFYAESGGQVGDSG 533

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  ++D QK A+ I  H   V  G +    S+   ID + R  + +NHSATHL
Sbjct: 534 ILSNSHGQFAVSDTQKYAQAI-GHLGKVITGSITVNNSVEAKIDIERRNAIRLNHSATHL 592

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS +    LRFD +H   +T  +++ IED VN  I +N P++T 
Sbjct: 593 LHAALRDVLGEHVSQKGSLVNEKYLRFDFSHFAAMTPKQIRQIEDIVNCQIRKNDPIITT 652

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ + A   GA AL G KY+ +VRV+S+     G  S  LCGGTH + TG+I L  I S
Sbjct: 653 LMDLDAAKEKGAMALFGEKYDAKVRVLSI-----GDFSIELCGGTHANRTGDIGLFRIKS 707

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEAITGQ A   L  Q + L  +   +K    +++ +++   ++     R
Sbjct: 708 ESGTAAGIRRIEAITGQAAIDDLHLQSQLLAEIGQLMKGDADSLMEKIKATLDKVKLLER 767

Query: 769 KLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            L  +  ++  Q +V       KI  VN +   ++  + K+L+ ++D L+ +++S II+L
Sbjct: 768 SLNQLKGQQAAQESVSLSQKVKKINGVNLLVTQLNNTEPKQLRIIVDDLKNQLKSAIIVL 827

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             IS + K S+++ VT DL  +  A DL    A+ + GG GGGRP MAQ+GG N      
Sbjct: 828 STISND-KVSLIVGVTNDLTAKIKAGDLISFVAQQV-GGKGGGRPDMAQAGGSNITALPA 885

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 886 ALASVEEWV 894


>gi|262172368|ref|ZP_06040046.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261893444|gb|EEY39430.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 860

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/907 (43%), Positives = 546/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DETGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATHLL
Sbjct: 511 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  ++  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    +   +          +IA VN +   ++  D+K L+ ++D ++ ++ SGIIML  
Sbjct: 738 LAAKESSGLIN------QVKQIAGVNVLVAELNGADNKALRGMVDDIKNQLGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|205830255|sp|A4VJB3|SYA_PSEU5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/910 (45%), Positives = 554/910 (60%), Gaps = 57/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ A+    G   EG    + +V+ DH+RS  FLIADG+ P+N
Sbjct: 244 AVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGVTPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVLKNE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLAGLAG-SVIPGEVVFKLYDTYGFPVDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +  G T+FIGY    GS       
Sbjct: 420 EEGFEREMQAQRERARSASAFGMD-------YNSLVKVEGETRFIGYQGTSGSG------ 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KVL                 A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD G 
Sbjct: 467 KVL-----------------ALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDCGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G F+HH IV+ G L T   +  T+D   R+  ++NHSATHLL
Sbjct: 510 LEAQGLRFDVRDT-SKAGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V    
Sbjct: 569 HAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEIEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I SE
Sbjct: 629 TDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L  +
Sbjct: 685 GGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K      +       +VN +  + +    +D K L +++D L+ K+ S +I+L 
Sbjct: 745 LEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVILLG 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+ ++ K  ++  VT+DL  R  A DL R  A    GG GGGRP MAQ GG +  K D+A
Sbjct: 805 GV-QDDKVVLVAGVTQDLTSRLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGTDAAKLDEA 862

Query: 889 IAGVASFLKK 898
           +A    F ++
Sbjct: 863 LALALPFAQQ 872


>gi|302037043|ref|YP_003797365.1| alanyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300605107|emb|CBK41440.1| Alanyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 876

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/903 (43%), Positives = 546/903 (60%), Gaps = 41/903 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ +R  F+++F++ GH  +PS+ LIP  DPTL+FTN+GM  FK +F G+E   Y    
Sbjct: 4   SVNDLRRAFIQYFEQQGHRAVPSAPLIPQADPTLLFTNAGMNQFKRVFLGEETRAYNRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+  W+ LT    L +
Sbjct: 64  TVQKCLRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKEEAIRFGWEFLTSVVGLSK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++IT++ ED+EA +LW+KI G+S  +I+R    DNFW MA+TGPCGPCSE+ FDQG  
Sbjct: 124 DRMWITIFREDDEADRLWQKI-GVSPSRIVRCGEKDNFWQMADTGPCGPCSELHFDQGPS 182

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           +PG    + E G+R IEIWNLVFMQF + +      LPK SIDTGMGLER+  V Q + +
Sbjct: 183 VPGDATPNGE-GDRVIEIWNLVFMQFNRDSAGTLNPLPKPSIDTGMGLERLTAVAQGRLS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DLF  L+ A     G +Y      +   RVI DHLR+ +FL+ADG+LP+NEGRGYV
Sbjct: 242 NYDSDLFAPLLAAIGTRAGAQYGAVEQADRSMRVIADHLRAITFLMADGVLPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + RLLG TEP +  L   +  +MG AY EL  A   + E  R E+ERF  
Sbjct: 302 LRRILRRAARHGRLLGITEPFLHELTATVVEQMGEAYHELRPAAGTVAEATRGEEERFIA 361

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD+GL +L+ +L+ +      +L+G   FKLYDT+G P+D++ +  C      +D   F
Sbjct: 362 TLDQGLPILNDMLTKVRASGQNMLSGTEIFKLYDTYGFPMDLIAEA-CREQDIRLDETGF 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+EEQR+RAR  + G  S T       +  + G T F+GYD L               
Sbjct: 421 EAAIEEQRTRAR-KTGGFESETARPALSEVAARVGTTAFVGYDHLNSE------------ 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       +V+A+++   +V+EA  G ++EVV D TPFYAE GGQ GD G   G  
Sbjct: 468 -----------GVVQALLKGDRLVKEAREGDEIEVVLDVTPFYAEGGGQAGDQGLLTGPD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R++I +  +    + VH  +V  G +R    L L+++ + R+  + NH+ATHL+H AL 
Sbjct: 517 GRVEIRETTRPVPTLIVHKGVVTSGSIREGERLQLSVNRRTRQDAARNHTATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS + P+ LRFD  H + + S ++  IE  VN+ + Q+ PV T +M  ++
Sbjct: 577 DLLGPHVKQYGSLVAPNRLRFDFAHFRSLASRDIDEIESIVNEQVRQDQPVQTDVMGVQE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A GA A  G KY D+VRVV ++       S  LCGGTH   TGEI L  IVSES + A
Sbjct: 637 AVAGGALAFFGDKYGDQVRVVHID-----TFSKELCGGTHCRRTGEIGLFRIVSESGVAA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIE +TG  A   L   +  ++ L+  LKV+ G VV R  ++ E+ ++ +   A+ K
Sbjct: 692 GVRRIECLTGSGALDSLKRLEADVRELSDLLKVAPGEVVSRTRKLSEQLKEKERELAEVK 751

Query: 779 LQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L++   +  D    +I  V   +     +D   ++++ D L+ K++SG++ L G + + K
Sbjct: 752 LKMASTSSGDSQAREIKGVQVHAQRTDGLDVNGMRALADQLRDKLRSGVVAL-GAANDGK 810

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+L+VVT+DL+ R  A DL +  A  + GG GGGRP MAQ+GG N      A+  V   
Sbjct: 811 VSLLVVVTKDLVGRLKAGDLIKEMATEV-GGTGGGRPEMAQAGGKNPEGLGTALEKVFGL 869

Query: 896 LKK 898
           ++K
Sbjct: 870 VQK 872


>gi|117919577|ref|YP_868769.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|205830207|sp|A0KU94|SYA_SHESA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117611909|gb|ABK47363.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 874

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 558/910 (61%), Gaps = 60/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------NAKVTALYLNGESVSAISAGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
           +  GI   ++D QK  +A G   H   +  G L     L   +D + R +  +NHS THL
Sbjct: 511 VAQGIEFAVSDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +   
Sbjct: 568 LHAALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVA 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I S
Sbjct: 628 EMAIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           E  I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+ 
Sbjct: 683 EGGIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEK 742

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827
            +   K KL              VN ++ +I +++  E   L+ + D L++K++S +I+L
Sbjct: 743 DMQQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G+++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D
Sbjct: 803 -GVAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLD 859

Query: 887 QAIAGVASFL 896
            A++ V  ++
Sbjct: 860 AALSQVLPWI 869


>gi|146281753|ref|YP_001171906.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|145569958|gb|ABP79064.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 900

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/910 (45%), Positives = 552/910 (60%), Gaps = 57/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 30  AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 89

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   L +
Sbjct: 90  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLKLPK 149

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 150 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 209

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 210 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 269

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ A+    G   EG    + +V+ DH+RS  FLIADG+ P+N
Sbjct: 270 AVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGVTPSN 327

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 328 EGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVLKNE 387

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 388 EEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT-LD 445

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +  G T+FIGY    GS       
Sbjct: 446 EEGFEREMQAQRERARSASAFGMD-------YNSLVKVEGETRFIGYQGTSGSG------ 492

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KVL                 A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD G 
Sbjct: 493 KVL-----------------ALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDCGY 535

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G F+HH IV+ G L T   +  T+D   R+  ++NHSATHLL
Sbjct: 536 LEAQGLRFDVRDT-SKAGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATHLL 594

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V    
Sbjct: 595 HAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEIEE 654

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I SE
Sbjct: 655 TDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKITSE 710

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--- 770
             + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L   
Sbjct: 711 GGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLEKE 770

Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             QL         N    S  ++  +  ++     +D K L +++D L+ K+ S +I+L 
Sbjct: 771 LEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVILLG 830

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+ ++ K  ++  VT+DL  R  A DL R  A    GG GGGRP MAQ GG +  K D+A
Sbjct: 831 GV-QDDKVVLVAGVTQDLTSRLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGTDAAKLDEA 888

Query: 889 IAGVASFLKK 898
           +A    F ++
Sbjct: 889 LALALPFAQQ 898


>gi|161525078|ref|YP_001580090.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350179|ref|YP_001945807.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|205830000|sp|A9AC16|SYA_BURM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160342507|gb|ABX15593.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334201|dbj|BAG43271.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 874

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 546/908 (60%), Gaps = 55/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   TT 
Sbjct: 4   AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A V
Sbjct: 184 DHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ +FLI DG++P NEG
Sbjct: 244 LQHVHSNYEIDLFQNLIKAAARVTEVSDLNNNSL--KVIADHIRACAFLIVDGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+E
Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 362 RFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F+ A+  QR +ARA           K    L+     T F GY+     +   +D K
Sbjct: 421 EPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDAK 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 VV-----------------ALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+H
Sbjct: 512 ANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R+M
Sbjct: 572 KALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IV E 
Sbjct: 632 PYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVMEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +L
Sbjct: 686 GVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLEKEL 745

Query: 773 IHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L  
Sbjct: 746 AALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        A+
Sbjct: 806 V-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863

Query: 890 AGVASFLK 897
           AGV  +++
Sbjct: 864 AGVKGWVE 871


>gi|262164028|ref|ZP_06031767.1| alanyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262027556|gb|EEY46222.1| alanyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 860

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/907 (43%), Positives = 547/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DETGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATHLL
Sbjct: 511 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+ E+K +E  VN  I +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  ++  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|146307925|ref|YP_001188390.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|145576126|gb|ABP85658.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 892

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/911 (45%), Positives = 557/911 (61%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 22  AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 81

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +L +
Sbjct: 82  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 141

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+++W K  G+ A+++IRI  N       DNFW+M +TGPCGPC+EI
Sbjct: 142 EKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 202 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 261

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ AS +  G   EG    + +V+ DH+RS SFLIADG+ P+N
Sbjct: 262 AVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGVTPSN 319

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 320 EGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVLKTE 379

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ GD+ FKLYDT+G P+D+  DI   R L+ +D
Sbjct: 380 EEQFAKTLEQGLKILEQDLAGL-QGSVIPGDIVFKLYDTYGFPVDLTADIARERELS-VD 437

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A + G+      K+          T+F+GY             
Sbjct: 438 EEGFEREMEAQRERARSASAFGMDYNALVKV-------DADTRFLGY------------- 477

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    + T+G   I+ A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD G 
Sbjct: 478 ---------EGTSGSGKII-ALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDCGY 527

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G F+HH +V +G L    S+    +   R+  ++NHSATHLL
Sbjct: 528 LESAGMRFDVRDT-TKAGGAFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATHLL 586

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +LK +ED VN  I +N  V T  
Sbjct: 587 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVETEE 646

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I SE
Sbjct: 647 TDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 702

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A + L   +E+LK  AS +K S+ NV+ ++  + E  R+L  +
Sbjct: 703 GGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLEKE 762

Query: 772 LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K       DL  S   +     ++  +  +D K L +++D L+ K+ SG+I+L 
Sbjct: 763 LEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVILLG 822

Query: 829 GISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G+  EK   VL+  VT+DL  +  A DL R  A    GG GGGRP MAQ GG +  K D+
Sbjct: 823 GVFDEK--VVLVAGVTQDLTAKLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGVDAGKLDE 879

Query: 888 AIAGVASFLKK 898
           A+A  A+F+++
Sbjct: 880 ALALAATFVEQ 890


>gi|221214968|ref|ZP_03587936.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165195|gb|EED97673.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 874

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 545/908 (60%), Gaps = 55/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   TT 
Sbjct: 4   AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A V
Sbjct: 184 DHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ +FLI DG++P NEG
Sbjct: 244 LQHVHSNYEIDLFQNLIKAAARVTEVGDLNNNSL--KVIADHIRACAFLIVDGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+E
Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 362 RFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F+ A+  QR +ARA           K    L+     T F GY+     +   +D K
Sbjct: 421 EPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDAK 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 VV-----------------ALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+H
Sbjct: 512 ANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R+M
Sbjct: 572 KALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IV E 
Sbjct: 632 PYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVMEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +L
Sbjct: 686 GVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLEKEL 745

Query: 773 IHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L  
Sbjct: 746 AALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        A+
Sbjct: 806 VEG-GKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863

Query: 890 AGVASFLK 897
           AGV  +++
Sbjct: 864 AGVKGWVE 871


>gi|221202097|ref|ZP_03575133.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204772|ref|ZP_03577789.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175629|gb|EEE08059.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221178180|gb|EEE10591.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 874

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 545/908 (60%), Gaps = 55/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   TT 
Sbjct: 4   AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A V
Sbjct: 184 DHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ +FLI DG++P NEG
Sbjct: 244 LQHVHSNYEIDLFQNLIEAAARVTEVGDLNNNSL--KVIADHIRACAFLIVDGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR E+E
Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 362 RFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F+ A+  QR +ARA           K    L+     T F GY+     +   +D K
Sbjct: 421 EPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDAK 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 VV-----------------ALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL+H
Sbjct: 512 ANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R+M
Sbjct: 572 KALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I L  IV E 
Sbjct: 632 PYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVMEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +L
Sbjct: 686 GVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLEKEL 745

Query: 773 IHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L  
Sbjct: 746 AALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        A+
Sbjct: 806 VEG-GKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863

Query: 890 AGVASFLK 897
           AGV  +++
Sbjct: 864 AGVKGWVE 871


>gi|126175316|ref|YP_001051465.1| alanyl-tRNA synthetase [Shewanella baltica OS155]
 gi|205830201|sp|A3D783|SYA_SHEB5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125998521|gb|ABN62596.1| alanyl-tRNA synthetase [Shewanella baltica OS155]
          Length = 874

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/909 (43%), Positives = 559/909 (61%), Gaps = 58/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+       +  RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K   L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDTALNEL-KGTTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VASGVEFTVNDTQKYGQATG-HQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A+ K +L     S   + D      VN +   +  V++  L+ + D L++K++S II+L 
Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL- 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G ++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D 
Sbjct: 803 GTAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 861 ALAQVLPWI 869


>gi|318604467|emb|CBY25965.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 875

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/912 (44%), Positives = 566/912 (62%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDIGIPCERIIRIGDNKGSAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A  +VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+     I         A+QF GYD +         
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRVD-----SASQFSGYDHVHQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDTG
Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +  G LR   S+   ID   R ++ +NHSATHL
Sbjct: 511 ELKNATATFAVADTQKYGQAI-GHLGQLAHGTLRVNHSIDAQIDVARRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+S
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAMLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +    S  K+  VN +  ++S++D+ E   L++++D L+ ++ S II
Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  I+ + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG N   
Sbjct: 803 VLATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTNVQA 859

Query: 885 ADQAIAGVASFL 896
              A+A V +++
Sbjct: 860 LPSALASVEAWV 871


>gi|262401750|ref|ZP_06078316.1| alanyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262352167|gb|EEZ01297.1| alanyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 860

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/907 (43%), Positives = 548/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +  G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEKAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATHLL
Sbjct: 511 LKTEAGIFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSI-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  ++  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K  ++  VT DL  +  A +L  + A  + GG GGGRP MAQ+GG +      A+
Sbjct: 792 VA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAQALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|78485931|ref|YP_391856.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123555227|sp|Q31F91|SYA_THICR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78364217|gb|ABB42182.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 864

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/898 (43%), Positives = 558/898 (62%), Gaps = 47/898 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF K GH  + SS ++P NDPTL+FTN+GMV FK  F GQE   Y+  T+V
Sbjct: 4   AELRKAFLDFFVKQGHTAVHSSPVVPGNDPTLLFTNAGMVQFKETFLGQETREYKRATSV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW  LT+E  L + +
Sbjct: 64  QRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWTFLTEELGLPEEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ITV++ED EA  +W K  G+SA++  R    DNFWSM +TGPCGPCSEIF+D G  + 
Sbjct: 124 LWITVFEEDREAEDIWLKEMGVSAERFSRCGAKDNFWSMGDTGPCGPCSEIFYDHGADVA 183

Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS  E+G+RYIEIWNLVFMQF++        LPK S+DTGMGLER+A V+Q + NN
Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFDRSEDGTLTPLPKPSVDTGMGLERLAAVMQNQHNN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF+ +++ + ++TG K   N+ +  RVI DH+RS +F++ DG+LP+NEGRGYVLRR
Sbjct: 244 YDIDLFQAIVKKASELTGEKDLANSSL--RVIADHIRSCAFMVVDGVLPSNEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG T+     L+P L  +MG AYPEL++ +  +E  L+ E+ERF +TL+
Sbjct: 302 IIRRAIRHGYKLGQTDIFFYQLVPTLVEQMGEAYPELVKEQANVERALKLEEERFAETLE 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +L+  ++ L    +++G  AFKLYDT+G PLD+  D+   R L+ +D   F Q +E
Sbjct: 362 NGMKILEEDIAQL-SGSVISGSTAFKLYDTYGFPLDLTADVARERNLS-VDEAGFEQEME 419

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR+RAR+ S   G+ +  K+ ++     G+T FIGY+                      
Sbjct: 420 AQRARARSAS-NFGAQSKNKVDYT-----GSTHFIGYE---------------------- 451

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
             +   + + AI      VE+A  GQ+  V+ +QTPFYAE+GGQ+GD G ++ +G+    
Sbjct: 452 -QDEAEAEIAAIFVDNVSVEKASEGQEAIVILNQTPFYAESGGQVGDQG-SLTEGMNSFH 509

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  +K    F+H   V  G +    +++  ID + RR    NHSATHLLH AL T+LG+
Sbjct: 510 VDNCQKQGAAFLHIGKVTAGSISVGQTILAHIDVKARRASERNHSATHLLHAALRTVLGT 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS + P+ LRFD +H +PI++ +L  IE  VN  I  N  V+   M+ E A A G
Sbjct: 570 HVGQKGSLVQPERLRFDFSHFEPISAEQLLEIEQLVNHNIMLNAQVMMEEMDIEAAKAKG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVV     D G  S  LCGGTHV+ TGEI    I SES I +G+RRI
Sbjct: 630 AMALFGEKYGDVVRVV-----DMGDFSIELCGGTHVNWTGEIGPFRITSESGIASGVRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781
           EA+TG+ A   +   ++ L ++A+ LK  +  V  +V ++  E ++L  QL   + KL  
Sbjct: 685 EAVTGEAAWQTIYDMEKSLLNIAANLKTDKPQVESKVAQLVTEQKELEKQLKQLQSKLAS 744

Query: 782 NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +  D     + +VN ++ + +E+   D   L+  +D L+ K++   I+L  +  + K S+
Sbjct: 745 SQGDDLASSVTEVNGVNVLAAELEGADVNTLRETLDKLRDKLEPAAIVLAAVDGD-KVSL 803

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +  V++ +     A +L    A+ + GG GGGRP MAQ+GG + +K  +A+A V  ++
Sbjct: 804 VAGVSKSITGNVKAGELVNHVAQQV-GGKGGGRPDMAQAGGKDPSKLKEALASVKEWV 860


>gi|290476264|ref|YP_003469168.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289175601|emb|CBJ82404.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 887

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/910 (43%), Positives = 564/910 (61%), Gaps = 58/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 16  STAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRPYSRAT 75

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT +  F+L
Sbjct: 76  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGKEWFNL 135

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 136 PKEKLWVTVYETDDEAYDIWHKEVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 195

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 196 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLER 255

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NYDIDLF  LI +  +VTG     N  +  RVI DH+RS +FL+ DG++P
Sbjct: 256 LTAVLQHVNSNYDIDLFCDLIASVAEVTGATDLTNKSL--RVIADHIRSCAFLVCDGVVP 313

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L+
Sbjct: 314 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVAPLIKIMGSAGDELKRQQSLVEQVLK 373

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L  L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 374 TEEEQFARTLERGLQLLDEELEKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 431

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D + F+ A+E QR RAR  S G G+   E+I        G + F GY+           
Sbjct: 432 VDEVGFDVAMENQRRRARESS-GFGTDYNEQIKVD-----GRSDFSGYE----------- 474

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V AI + GE +++  +G++  V+ D+T FYAE+GGQ+GDTG
Sbjct: 475 ------------HNSQQATVMAIFRHGEAIDQIHAGEEAIVILDKTAFYAESGGQVGDTG 522

Query: 533 -CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
             + G+GI  ++TD QK  + I  H   +  G L    ++   I+   R  + +NHSATH
Sbjct: 523 NLSNGNGI-FEVTDTQKYGQAI-GHIGKLINGTLNVNNTINAEINRVRRDSIRLNHSATH 580

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +   +++ +E+ VN+ I +NL +VT
Sbjct: 581 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKLEQIRQVENLVNEEIRKNLSIVT 640

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E+A   GA AL G KY+++VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 641 ELMELEEAKTKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIS 695

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITGQ A + +  Q + L+ +A  +K    ++  +V+   +  ++L+
Sbjct: 696 SESGTAAGIRRIEAITGQTALNSVYQQTDLLQDIAHLVKSDISSLNEKVKTTLDRTKQLE 755

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K Q   ++ S       +I  V  +   + + + K L++++D L+ ++ S II+
Sbjct: 756 KELQHLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDTEPKMLRTMVDELKNQLGSAIIV 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K ++++ +T+DL  R  A DL    A+ + GG GGGRP +AQ+GG +     
Sbjct: 816 LSTVTGD-KVTLIVGITKDLTARIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVAALP 873

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 874 SALASVEEWV 883


>gi|170701933|ref|ZP_02892858.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133166|gb|EDT01569.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 874

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/910 (42%), Positives = 542/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L + 
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+EIF
Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGGAYPELKEAEQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ +     ++L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGL 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    +   ID   R +   NHSATHL+
Sbjct: 511 LANASTRFAVADTLKVQADVVGHHGTLEQGTLKIGDVMRAEIDAHRRARTQRNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + R+
Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I    IV E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|170695494|ref|ZP_02886639.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139685|gb|EDT07868.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 890

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/908 (42%), Positives = 541/908 (59%), Gaps = 55/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   TT 
Sbjct: 20  AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRATTA 79

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L + +
Sbjct: 80  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPKDK 139

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 140 LWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 199

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A V
Sbjct: 200 DHGPDVWGGPPGSPDEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIAAV 259

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI A+ + TG+    NN +  +VI DH+R+ SFLI DG++P NEG
Sbjct: 260 LQHVHSNYEIDLFQALINAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGNEG 317

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        ++  L  +MG AYPEL  A+  + + LR E+E
Sbjct: 318 RGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGGAYPELKDAEQRVTDVLRQEEE 377

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T++ G+ +LD  L+ L K   + L+G++AFKL+DT+G PLD+  D+ C      +D
Sbjct: 378 RFFETIEHGMSILDNALAELDKKGGKTLDGELAFKLHDTYGFPLDLTADV-CREREVTVD 436

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F++A+  QR +ARA           K+   L+     T F GY+     + + +D K
Sbjct: 437 EAAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDDAK 484

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V+                 A+   G  V++   GQ+  VV D TPFYAE+GGQ+GD G  
Sbjct: 485 VV-----------------ALYVDGASVQQVTHGQQAVVVLDHTPFYAESGGQVGDQGLL 527

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
               +R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL+H
Sbjct: 528 ANASVRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHLMH 587

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E  VN  +  N P + R+M
Sbjct: 588 KALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEQIVNAEVLANAPGIVRVM 647

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV E 
Sbjct: 648 PFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVMEG 701

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ ++L  +L
Sbjct: 702 GVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLEKEL 761

Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+  +  D       ++A V  ++  +   D K L+  +D L+ K++S  I+L  
Sbjct: 762 SALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIVLAS 821

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A+
Sbjct: 822 V-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 879

Query: 890 AGVASFLK 897
           AGV  +++
Sbjct: 880 AGVKGWVE 887


>gi|294649969|ref|ZP_06727359.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824138|gb|EFF82951.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 884

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/918 (44%), Positives = 545/918 (59%), Gaps = 68/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 11  AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT E    L +
Sbjct: 71  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLGLPK 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  G+ A++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 131 DRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 190

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 191 FYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERIS 250

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 251 AVLQHVNSNYEIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 308

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL  E
Sbjct: 309 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLIRE 368

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L K  ++ G+  FKLYDT+G P D+  DI   R L  ID
Sbjct: 369 EEQFAKTLEQGLKLLEGELAQL-KGNVIAGETVFKLYDTYGFPTDLTADIARERDLT-ID 426

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + S+ +  G TQF GY              
Sbjct: 427 EAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                   D T+G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 467 --------DATHGQGQIV-AIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDTGIF 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D    ++ D  KK+ G FVH  IV  G L+   S+  T+    R   + NHSATHLLH
Sbjct: 518 KNDTGIFEVQDT-KKSGGAFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATHLLH 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV T ++
Sbjct: 577 AALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTTELL 636

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLY 709
           + E A A GA  L G KY D VRV+S+    G V      S  LCGG HV  TG+I L  
Sbjct: 637 DIETAKAKGAMMLFGEKYGDEVRVLSM----GSVIEEKNFSIELCGGIHVKRTGDIGLFK 692

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++++ S LK  +   V +VE + E    
Sbjct: 693 ITSEGGVAAGVRRIEAVTGTQALEVVQKVDHDIQTINSLLKAQKDQTVEKVEAVVETASS 752

Query: 770 LQLIHAKRKLQLNVEDLSCH------KIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           LQ    K+  QLN +  S        ++ D+     +I+ V   D+K L+++ D+++ K+
Sbjct: 753 LQ----KQIEQLNQKLASFQAAELLDQVKDIAGRQTLITTVKGLDAKSLRNLHDSVKSKL 808

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +  +I+L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P
Sbjct: 809 EDAVIILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAP 866

Query: 881 NGNKADQAIAGVASFLKK 898
              K DQ  A + ++L++
Sbjct: 867 LNEKFDQVFAALPAWLEQ 884


>gi|145630561|ref|ZP_01786341.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144983951|gb|EDJ91393.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 874

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/914 (42%), Positives = 553/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGTTDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYA++GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAKSGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D +     S+NHSA
Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRLHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|261210116|ref|ZP_05924414.1| alanyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260840881|gb|EEX67423.1| alanyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 860

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +  G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR       +G     + SL +    T+F GY   RG        
Sbjct: 420 DEAGFEKAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 466 ---------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + D  K    I  HH I+ +G+L     +   +D Q R  +S+NHSATHLL
Sbjct: 511 LKTEAGIFHVEDTHKLGNAI-AHHGILAQGVLAKGDQVEAIVDEQRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T I
Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETHI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE
Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  ++  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K  ++  VT DL  +  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849

Query: 890 AGVASFL 896
             V +++
Sbjct: 850 ESVDAWI 856


>gi|322421559|ref|YP_004200782.1| alanyl-tRNA synthetase [Geobacter sp. M18]
 gi|320127946|gb|ADW15506.1| alanyl-tRNA synthetase [Geobacter sp. M18]
          Length = 875

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/896 (43%), Positives = 544/896 (60%), Gaps = 41/896 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK+ F G EK  Y    + QK
Sbjct: 6   IRAQFFNFFQKKGHTLVESSNLIPKNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E  L   RLY
Sbjct: 66  CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTVELGLSSDRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G     G
Sbjct: 126 VTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCG 185

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q  T+NY
Sbjct: 186 SPACAVGCDCDRYMEIWNNVFMQFNRSKDGTLTPLPKPSVDTGMGLERISAVMQGVTSNY 245

Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D DL + +I+  EQV+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGRGYVLR
Sbjct: 246 DTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGRGYVLR 305

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RIMRRA  +A++LG  EP++  ++ A+   MG AYPEL++ +  +++ + +E+ERF +TL
Sbjct: 306 RIMRRAARHAKMLGIAEPVLYRVVDAVNVMMGEAYPELLEREHYVKKVILAEEERFIETL 365

Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           DRGL +L+   + +      +++G+V FKLYDT G P+D+  DI+ A G   +D   F  
Sbjct: 366 DRGLAILNEETAAMKAKGASVISGEVIFKLYDTFGFPVDLTADIVEAEGFT-LDEDGFAL 424

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E+QR +AR +  G G      I+  L+    A++F+GY                    
Sbjct: 425 CMEKQRVKARENWKGSGEQGLADIYKELRGTGIASEFVGY-------------------- 464

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    S + AI++ G +VEE  +G ++E+V  +TPFY E+GGQ GDTG        
Sbjct: 465 ---AEQTAYSTISAIIKGGVLVEEGNAGDEIEIVTAKTPFYGESGGQAGDTGTISTGSAH 521

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++T   +    + VH   V  G +R   ++ L +   +R   + NH+ATHLL  AL  +
Sbjct: 522 VEVTASTRPFPDLIVHRGKVVSGNIRNGEAVDLKVATAHRAATARNHTATHLLQAALREV 581

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +TPD LRFD TH  P+T+ E++ +E  VN  I  N PV  R M   +A+
Sbjct: 582 LGEHVKQAGSLVTPDRLRFDFTHFSPMTAEEMRRVEVLVNGHIMGNSPVDAREMPATEAL 641

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY D VRVV V     G  SS LCGGTHV   GEI    I+SE+ I AG+
Sbjct: 642 AGGATALFGEKYGDIVRVVRV-----GDVSSELCGGTHVHGAGEIGFFKILSEAGIAAGV 696

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778
           RRIEA TG  A + +   +++ + +A+ LK   G+ + RVE++    R+LQ  L   + K
Sbjct: 697 RRIEAQTGNGALAVVHQMEDEQRGIATLLKAEGGSTLDRVEKLLASQRELQKELEALQAK 756

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           L  N       ++ + N +  +  +V  D+K L+ + D L+ +I SGII+L G +   KA
Sbjct: 757 LNANKSADLIQQVREQNGIKILAVKVEGDAKGLRELSDTLKARIGSGIIVL-GAADAAKA 815

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           ++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+  V
Sbjct: 816 NLLVAVTSDLASRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPENLAEALEAV 870


>gi|58696697|ref|ZP_00372246.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537122|gb|EAL60234.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 845

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/865 (44%), Positives = 537/865 (62%), Gaps = 54/865 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GMV FKNIFTG +K   +   + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMVQFKNIFTGAQKTEMKRAVSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFKE AI+ AW+ +TKE  LD+ RL ITVY  D+EA+++W+KISG S+DKIIRITT
Sbjct: 61  SFGDYFKETAIEFAWEFITKELSLDKNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITT 120

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
           +DNFWSM  TGPCGPCSEIF+D G         + +EG+R +EIWNLVFM+F +  +   
Sbjct: 121 DDNFWSMGNTGPCGPCSEIFYDHG-------SPNLQEGDRIVEIWNLVFMEFNKDEEGNL 173

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276
             LPK  IDTGMGLER+A V+Q   +NYDIDLF  LI  S++  G      N + H++I 
Sbjct: 174 HKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCG---RTENKIAHKIIA 230

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE---- 332
           DHLR+++FLIA+G+LP NEGR YVLRR++RRA  Y  LLGY + L+  + P L       
Sbjct: 231 DHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSA 290

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391
            MG  YPELI+AK LIE TL+SE+E F  TL +G+ LL+   + L   + L G+ AFKLY
Sbjct: 291 YMGDIYPELIRAKSLIETTLKSEEENFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLY 350

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G PLDI  DIL  + +   D   F+ A+ EQ+ RARA   G G  + E++WF L +K
Sbjct: 351 DTYGFPLDITLDILKEKKI-NFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDK 409

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
           +G T+F+GY+    +     D K+L                  +  + E+++ A  G+K+
Sbjct: 410 FGKTKFVGYEFNEVN-----DAKILA----------------IVSSKNEVIDSAKEGEKI 448

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            ++ D+TPFY E+GGQ+GDTG  I     + I +   K   +++H  IV+ G +    ++
Sbjct: 449 TIILDKTPFYGESGGQVGDTGSLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTV 508

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +ID + R+ L  NHSATHLLH  L  ILG HV+Q GS + PD LRFD +H+  +T  +
Sbjct: 509 AASIDKERRQTLRRNHSATHLLHFVLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQ 568

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  +ED VN +I +NL   T+I +   AI  GA AL G KY ++VRVV +        S 
Sbjct: 569 LFLVEDMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYGNQVRVVKIG------DSR 622

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV  TGEI L  IV+ESS+  G+RRIEA+TGQ A +++   +  LK +A F+K 
Sbjct: 623 ELCGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKA 682

Query: 752 SQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
               ++ R+  + +E ++ +  I    K  ++ E +   +I  +NF+SH  + + +  ++
Sbjct: 683 PVSEIINRLNILNQERKESEAKIKNLYKKLISAESIKSTEINGINFVSHAFTNIPANIIR 742

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             +  LQ++    II      K+K  +VLI+ V++DL ++ +A +L  ++ +       G
Sbjct: 743 EFV--LQQQKPKTIIAFTATEKDK--TVLIIKVSKDLANKISAKELVSIAVE----KNCG 794

Query: 870 GRPHMAQSGGPNGNKADQAIAGVAS 894
           G   +AQ+G  + NK D AI  + S
Sbjct: 795 GNAELAQTGS-DSNKIDDAITAICS 818


>gi|114046704|ref|YP_737254.1| alanyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123030800|sp|Q0HXF8|SYA_SHESR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113888146|gb|ABI42197.1| alanyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 874

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 558/908 (61%), Gaps = 60/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 6   AALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRATTA 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L + R
Sbjct: 66  QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 126 LCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 185

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A +
Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+NEG
Sbjct: 246 MQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSNEG 303

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E+E
Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAEEE 363

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +TL+RGL +LD  L+ L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D  
Sbjct: 364 QFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VDEA 421

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ EQRSRA+A      +G     + +  +    T F GY  L G           
Sbjct: 422 GFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG----------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  + 
Sbjct: 465 ------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVLVA 512

Query: 537 DGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GI   ++D QK  +A G   H   +  G L     L   +D + R +  +NHS THLLH
Sbjct: 513 QGIEFAVSDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+  +
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKVQLDKMKQLEKDM 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829
              K KL              VN ++ +I +++  E   L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D A
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAA 861

Query: 889 IAGVASFL 896
           ++ V  ++
Sbjct: 862 LSQVLPWI 869


>gi|261219548|ref|ZP_05933829.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|260924637|gb|EEX91205.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 723

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/732 (50%), Positives = 496/732 (67%), Gaps = 36/732 (4%)

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPK 221
           M +TGPCGPCSEIF+D G+ I GG PGS EE G+R+IEIWNLVFMQFEQQ  + R  LP+
Sbjct: 1   MGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPR 60

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
            SIDTGMGLER+A VLQ   +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+
Sbjct: 61  PSIDTGMGLERIAAVLQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRA 120

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SSFLIADG+LP+NEGRGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI
Sbjct: 121 SSFLIADGVLPSNEGRGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELI 180

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +A+ LI ETL+ E+ RF KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ 
Sbjct: 181 RAESLISETLKLEETRFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLT 240

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           QD L  RG+A +D   FN A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+
Sbjct: 241 QDALRQRGIA-VDTEGFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE 299

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T     ++ ++V+    V     G+ + VV +QTPFY
Sbjct: 300 -----------------------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFY 336

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E+GGQ GDTG   G+G  + + D QKK EG+FVH   V  G  +    + L +D   R 
Sbjct: 337 GESGGQQGDTGTISGEGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRT 396

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NHSATHLLH AL   LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+
Sbjct: 397 RIRSNHSATHLLHEALRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANE 456

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGG 696
           II QN PV TR+M  +DAIA GA AL G KY D VRVVS+       + G  +S  LCGG
Sbjct: 457 IILQNAPVTTRLMAVDDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGG 516

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV  TG+I L+ I+SE  + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V
Sbjct: 517 THVRQTGDIGLVRIISEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADV 576

Query: 757 VGRVEEIWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELK 810
           + RV  + +E +KL  +L  A++KL L    +    +   +  VNF+  I++ V  ++LK
Sbjct: 577 LDRVNALIDERKKLERELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLK 636

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            + D  +K++ SG+++ +G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGG
Sbjct: 637 PLADEGKKQVGSGVVLFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGG 696

Query: 871 RPHMAQSGGPNG 882
           RP MAQ+GGP+G
Sbjct: 697 RPDMAQAGGPDG 708


>gi|205830247|sp|A1S4E9|SYA_SHEAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 873

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+EAF +W K  G+ A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS EE G+R+IEIWN+VFMQ+ +Q+      LPK ++DTGMG+ER++
Sbjct: 184 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSDLENKSL--RVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A  EL   + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R L  +D
Sbjct: 362 EEQFARTLERGLGMLDAALADL-KGDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+ EQRSRA+A      +G     + +  +   AT F GY  L           
Sbjct: 420 EEGFNAAMAEQRSRAQA------AGQFSADYNAALKIDTATDFCGYTEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V A+ + GE V+ A +G  + VV D TPFYAE+GGQ+GD G  
Sbjct: 463 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +GI  H   +  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 511 LAEGVEFNVADTQKFGQGIG-HKGQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK++ED VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A A GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ R+L+  +
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 744

Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K                +I  V  +   +  V++  L+ + D L++K++SG+++L  
Sbjct: 745 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I    K +++  VT+DL  +  A +L A ++A+V  GG GGGRP MAQ+GG    K D A
Sbjct: 804 IGSGDKVNLIAGVTQDLTGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSEPAKLDGA 861

Query: 889 IAGVASFLKK 898
           +A V  +L +
Sbjct: 862 LASVVPWLNE 871


>gi|330879688|gb|EGH13837.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 874

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/911 (43%), Positives = 547/911 (60%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP++
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASARAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL TEMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSATHLL
Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|123441185|ref|YP_001005172.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|205830291|sp|A1JK09|SYA_YERE8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122088146|emb|CAL10934.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 875

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/912 (43%), Positives = 567/912 (62%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI+A  +VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + +L     A+QF GY+ +         
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNNLIRVDSASQFSGYNHVHQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDTG
Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFAVADTQKYGQAIG-HLGQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+S
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDTNNLADKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +    S  K+  VN +  ++S++D+ E   L++++D L+ ++ S II
Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L   + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG N   
Sbjct: 803 VLA-TTADDKVSLIVGVTKDLTSKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTNVQA 859

Query: 885 ADQAIAGVASFL 896
              A+A V +++
Sbjct: 860 LPSALASVEAWV 871


>gi|119774185|ref|YP_926925.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|119766685|gb|ABL99255.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 900

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 31  TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 90

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L +
Sbjct: 91  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 150

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+EAF +W K  G+ A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 151 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 210

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS EE G+R+IEIWN+VFMQ+ +Q+      LPK ++DTGMG+ER++
Sbjct: 211 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 270

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 271 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSDLENKSL--RVIADHIRSCAFLVADGVMPSN 328

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A  EL   + ++E+ L++E
Sbjct: 329 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 388

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R L  +D
Sbjct: 389 EEQFARTLERGLGMLDAALADL-KGDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 446

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+ EQRSRA+A      +G     + +  +   AT F GY  L           
Sbjct: 447 EEGFNAAMAEQRSRAQA------AGQFSADYNAALKIDTATDFCGYTEL----------- 489

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V A+ + GE V+ A +G  + VV D TPFYAE+GGQ+GD G  
Sbjct: 490 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 537

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +GI  H   +  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 538 LAEGVEFNVADTQKFGQGIG-HKGQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 596

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK++ED VN  I +N  +    M
Sbjct: 597 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 656

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A A GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 657 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 711

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ R+L+  +
Sbjct: 712 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 771

Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K                +I  V  +   +  V++  L+ + D L++K++SG+++L  
Sbjct: 772 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLA- 830

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I    K +++  VT+DL  +  A +L A ++A+V  GG GGGRP MAQ+GG    K D A
Sbjct: 831 IGSGDKVNLIAGVTQDLTGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSEPAKLDGA 888

Query: 889 IAGVASFLKK 898
           +A V  +L +
Sbjct: 889 LASVVPWLNE 898


>gi|116048827|ref|YP_792373.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122257933|sp|Q02I63|SYA_PSEAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115584048|gb|ABJ10063.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 874

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419

Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RARA S  G+        + SL +  G T+F+GY  +          
Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +G   IV A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+G 
Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G  +HH +V RG L    ++   +D   R+  ++NHSATHLL
Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T  
Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I SE
Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L  +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744

Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K      +DLS    +I     ++  +  +D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804

Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           G   E    V++V  VT+DL  +  A +L +  A    GG GGGRP MAQ GG N  K D
Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTNAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|240949596|ref|ZP_04753931.1| alanyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240295854|gb|EER46530.1| alanyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 874

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/896 (43%), Positives = 547/896 (61%), Gaps = 60/896 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FFQ  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFQSKGHTVVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLPG+ EE G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ID+F+ LI+   ++  +K   N  +  RVI DH+RS S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTVAELLNVKDLDNKSL--RVIADHIRSCSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L   MG A   + Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + +++ L+GDVAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENKTLSGDVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A ID   F   ++ QR RA+A S  G+      K+        G T FIGYD L      
Sbjct: 418 A-IDEAGFEAEMQAQRERAKASSNFGVDYNNVIKV-------DGKTNFIGYDNLTA---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V  +   G  V+   SG+   ++ DQTPFYAE GGQ+G
Sbjct: 466 -------------------EATVVGLFSNGNAVDVIKSGENAIIILDQTPFYAEMGGQVG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G    +  +  + D QK  + +F H   +E G L+    +   +  + R  + +NHSA
Sbjct: 507 DSGRISTEFCQFNVADTQKYGQ-VFGHIGQLEAGELKVGDKVTAEVAAERRHSIQLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LGSHV Q GS +   GLRFD +  + IT  +L+ IE  VN  I +N+ V
Sbjct: 566 THLLHSALRKVLGSHVMQKGSLVNEKGLRFDFSQPEAITKEQLEEIERIVNAKIRENIQV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           V   M  E+A A GA AL G KY D VRVV     D  V S  LCGGTHV  TG+I L  
Sbjct: 626 VIEEMGIEEAKAKGAMALFGEKYGDIVRVV-----DMSVFSIELCGGTHVKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + SE ++ AG+RR+EAITG+ A + L    +  +  A  LK    N+V +++++ ++ ++
Sbjct: 681 LTSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKR 740

Query: 770 ----LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K+  Q    DL+    +I  VN +   +   + K L++++D L+ ++ S 
Sbjct: 741 LEKELQQLKEKQASQAGA-DLAKQAKQINGVNVVVTQLENAEPKVLRTMVDDLKNQLGSA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I++L G   ++K ++++ V+ DL  +  A +L    AK + GG GGGRP MA +GG
Sbjct: 800 IVVL-GTVVDEKVNLIVGVSSDLTTQIKAGELVGEMAKCV-GGKGGGRPDMAMAGG 853


>gi|313105787|ref|ZP_07792050.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|310878552|gb|EFQ37146.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 874

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419

Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RARA S  G+        + SL +  G T+F+GY  +          
Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +G   IV A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+G 
Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G  +HH +V RG L    ++   +D   R+  ++NHSATHLL
Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I SE
Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L  +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744

Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K      +DLS    +I     ++  +  +D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804

Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           G   E    V++V  VT+DL  +  A +L +  A    GG GGGRP MAQ GG N  K D
Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTNAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|329894416|ref|ZP_08270263.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328923063|gb|EGG30387.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 866

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/898 (44%), Positives = 543/898 (60%), Gaps = 50/898 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G E   Y   T+ Q+
Sbjct: 6   IREAFLSYFESQGHTRVASSSLVPENDPTLLFTNAGMNQFKDTFLGSEPRDYVRATSSQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L + RL+
Sbjct: 66  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWTFLTEVLGLPEDRLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G  +PGG
Sbjct: 126 VTVHVSDDEAADIWIKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADVPGG 184

Query: 187 LPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            PGS +++ +RYIEIWNLVFMQF +    E   LPK S+DTGMGLER+A V+Q   +NY+
Sbjct: 185 PPGSENDDLDRYIEIWNLVFMQFNRDASGELHPLPKPSVDTGMGLERIAAVMQNVHSNYE 244

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           IDLF+ LI+A+ Q        NN++++  RVI DH+RS SFLI DG++P NEGRGYVLRR
Sbjct: 245 IDLFQALIKAAAQAVNC----NNLLDNSLRVIADHIRSCSFLIVDGVVPGNEGRGYVLRR 300

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG TEP    L+ AL  +MG AYPEL Q    + + L  E+++F KTLD
Sbjct: 301 IIRRAVRHGNKLGATEPFFYKLVDALSAQMGEAYPELAQQAGRVAQVLLQEEQQFAKTLD 360

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +L+  L  L   EI  GD+ FKLYDT+G P+D+  DI   RGL  +D+  +++A+ 
Sbjct: 361 NGMQILEESLEGLQGGEI-PGDIVFKLYDTYGFPVDLTNDIARERGLT-LDMAGYDEAMA 418

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +QR+R++        G     +       GAT+F+GY           D K         
Sbjct: 419 KQRARSQE------GGKFVVDYSKTIALEGATEFLGY----------SDAK--------- 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S  V+ I+  GE V    +GQ+  VVFD+TPFYAE+GGQ GDTG     G+  ++
Sbjct: 454 ----ASGTVEVIIVDGEKVSTLAAGQQGVVVFDRTPFYAESGGQTGDTGGLTAPGLSARV 509

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  K+ + + +HH  VE G L    S+ + ID   R Q+  NHSATHLLH AL  +LG 
Sbjct: 510 LDTTKQGD-LHLHHVHVESGELAVAASVSMQIDEHLRDQIRANHSATHLLHAALRQVLGG 568

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +T + LRFD +HS P+T+ EL  +   VN  +  N  V TR+MN ++A+ +G
Sbjct: 569 HVQQKGSLVTAERLRFDFSHSAPVTADELAQLNAIVNAQVMANTEVSTRLMNMDEAVQAG 628

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRV+++  +     S  LCGGTHV  TG+I +  IVSES I AG+RRI
Sbjct: 629 AMALFGEKYGDEVRVLAMGTDS---FSVELCGGTHVGRTGDIGVFRIVSESGIAAGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKL-Q 780
           EA+TG  A + +   D  L+ +   LK    NVV RV  +  + R+L  Q+   K K+ Q
Sbjct: 686 EAVTGVGALAEINSLDTALQGVCLELKAQPENVVSRVAAMRGQIRELEKQIDQLKMKMAQ 745

Query: 781 LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               +L+   I    V  ++  +   D+K L+  +D ++ K+   +++L  +  +K   +
Sbjct: 746 AAGGELASQAIEVRGVPVLAARLDGADAKALRDAVDQMKSKLGDSVVLLASVVDDKIV-L 804

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              V++ + DR  A DL R  A  L GG GGGRP MAQ GG +    +  +  V +++
Sbjct: 805 AAGVSKAVTDRVKAGDLMREFATRL-GGKGGGRPDMAQGGGTDVAALNDVLGAVPAWV 861


>gi|260767196|ref|ZP_05876138.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260617804|gb|EEX42981.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 860

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 548/908 (60%), Gaps = 69/908 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY  D+EAF +W K  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PGS EE G+R+IEIWN VFMQF +    +   LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+  V G  Y+  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   E L+G+  FKLYDT+G P D+  D+   RG   I
Sbjct: 362 EEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQR RAR       +G     +  L +  GAT+F GY             
Sbjct: 420 DEAGFEAAMEEQRQRARE------AGHFGTDYNQLIKVEGATEFCGY------------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G S+I +  V +G+      +G K  +V ++TPFYAE+GGQ GD G 
Sbjct: 461 ---------SATQGESTITEMFV-EGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++  G+     ++   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGVFHVVDTQKLGNAI-AHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  +GLRFD +H + +++AELK +E  VN+ +  N  + T I
Sbjct: 570 HAALRRVLGEHVTQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A A GA AL G KY+++VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 630 MDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S I AGIRRIEA+TG+ A  +L  Q  + +S              +V ++  + + L  +
Sbjct: 685 SGIAAGIRRIEAVTGEAALDYLDAQHAQFES--------------KVADMASKAKGLEKE 730

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
           + H K KL          K+ D+  +  +++++   D+K L+ ++D L+ ++ SGIIML 
Sbjct: 731 IQHLKDKLAAKESASLTSKVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLG 790

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 791 NVA-DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAAALPSA 848

Query: 889 IAGVASFL 896
           +  V +++
Sbjct: 849 LESVDAWI 856


>gi|87122506|ref|ZP_01078386.1| alanyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86162299|gb|EAQ63584.1| alanyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 871

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/908 (43%), Positives = 566/908 (62%), Gaps = 60/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R +FL++F+   H+++ SSSLIP NDPTL+FTN+GMV FK++F G +   Y   T+ 
Sbjct: 4   SELRQSFLKYFESKQHQVVDSSSLIPGNDPTLLFTNAGMVQFKDVFLGMDDRPYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+   L   +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTQVLKLPTEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY +D+EA+ +W K  G+  D+I+RI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LLVTVYADDDEAWDIWAKKIGVPEDRIVRIGDNKGARYASDNFWQMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GG PGS EE G+R+IEIWN+VFMQF +        LPK S+DTGMGLER+A +
Sbjct: 184 DHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRDANGVMNPLPKPSVDTGMGLERIAAI 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           LQ   +NY+ID+F++LI+A+ +V G    E  ++   RVI DH+RS SF+I DGI+P+NE
Sbjct: 244 LQGVHSNYEIDIFQNLIKAAAKVVGTDDLEAQSL---RVIADHIRSCSFMIVDGIVPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG  +     L+  L TEMG AYP+L +    I+  L  E+
Sbjct: 301 GRGYVLRRIVRRAIRHGHKLGQKQAFFNTLVADLVTEMGDAYPDLAKLADRIQAILLKEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E+F KTL++G+ +LD  +  LG  +I++G+  FKLYDT+G P D+  D+   R L  ID 
Sbjct: 361 EQFAKTLEQGMRILDDAIGELGDSKIISGETVFKLYDTYGFPADLTNDVARERHLE-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A+EEQR+RAR       S +   +  S   + G T+F GY     S  + E    
Sbjct: 420 KGFERAMEEQRNRAR-------SASQFTMDMSGSIEAGDTEFTGY-----SHLVDE---- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
            C+             ++A++  GE VE   +GQ   V+  QTPFY E+GGQ+GD G   
Sbjct: 464 -CE-------------IEALILDGEKVESLTAGQSGIVILKQTPFYGESGGQVGDQGWLR 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G    +T+  K+ +   +HH  +  G +     L  T+D   R    +NHSATHL+H 
Sbjct: 510 GNGA-FSVTNTTKQGK-THLHHGELREGSITLGDKLTATVDASLRAATGLNHSATHLMHE 567

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q GS    + LRFD +H + +T+AE++ +ED VN+ I  N  V+T  M+
Sbjct: 568 ALRRVVGDHVHQKGSLCDAERLRFDFSHFEGVTAAEIEQVEDMVNEQIRLNHEVLTEEMD 627

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A   GA AL G KY+ +VRV+++    G  +S  LCGGTHV  TG+I +  IV+ES 
Sbjct: 628 IESAKERGAMALFGEKYDSQVRVLTM----GSEYSIELCGGTHVKRTGDIGVFKIVAESG 683

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---- 771
           I AG+RRIEAITG+ A  +    ++ ++ +A+ +K ++ N++ +V  + ++ R LQ    
Sbjct: 684 IAAGVRRIEAITGKVAIDYNRATEKSVQQVAALVKGNKENMIEKVTALSDQNRALQKELD 743

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
           +I AK   Q    DL+   + D++    ++++V   D K L+ ++D L+ K++S +I+L 
Sbjct: 744 VIKAKLAAQAG-SDLASQAV-DIDGGKLLVAQVDVEDPKALRDMLDELKSKLESAVILLA 801

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K S++  VT++L  +  A DL ++ A ++  G GGGRP MAQ+GG N     +A
Sbjct: 802 SVN-DSKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGRGGGRPDMAQAGGNNPAGLPEA 859

Query: 889 IAGVASFL 896
           +A V  ++
Sbjct: 860 LASVQPWV 867


>gi|226952658|ref|ZP_03823122.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226836595|gb|EEH68978.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 884

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/915 (44%), Positives = 542/915 (59%), Gaps = 62/915 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 11  AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT E    L +
Sbjct: 71  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLGLPK 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  G+ A++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 131 DRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 190

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 191 FYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERIS 250

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 251 AVLQHVNSNYEIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 308

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL  E
Sbjct: 309 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLIRE 368

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L K  ++ G+  FKLYDT+G P D+  DI   R L  ID
Sbjct: 369 EEQFAKTLEQGLKLLEGELAQL-KGNVIAGETVFKLYDTYGFPTDLTADIARERDLT-ID 426

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + S+ +  G TQF GY              
Sbjct: 427 EAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                   D T+G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 467 --------DATHGQGQIV-AIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDTGIF 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D    ++ D  KK+ G FVH  IV  G L+   S+  T+    R   + NHSATHLLH
Sbjct: 518 KNDTGIFEVQDT-KKSGGAFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATHLLH 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV T ++
Sbjct: 577 AALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTTELL 636

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + E A A GA  L G KY D VRV+S+    ED    S  LCGG HV  TG+I L  I S
Sbjct: 637 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEDKNF-SIELCGGIHVKRTGDIGLFKITS 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEA+TG +A   +   D  ++++   LK  +   V +VE + E    LQ 
Sbjct: 696 EGGVAAGVRRIEAVTGTQALEVVQKADTDIQTINGLLKAQKDQTVEKVEAVVETASSLQ- 754

Query: 773 IHAKRKLQLNVEDLS---------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              K+  QLN +  S           +IA    +   +  +D+K L+++ D+++ K++  
Sbjct: 755 ---KQIEQLNQKLASFQAAELLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDA 811

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P   
Sbjct: 812 VIILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNE 869

Query: 884 KADQAIAGVASFLKK 898
           K DQ  A + ++L++
Sbjct: 870 KFDQVFAALPAWLEQ 884


>gi|319897692|ref|YP_004135889.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317433198|emb|CBY81572.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 874

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/914 (42%), Positives = 552/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+F N+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFANAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK  I  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTFIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA++ S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQSASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R  +S+NHSA
Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNISLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIEILVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L      LK     +V +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSTDLLKSDVNTLVEKIQQLQDKTKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|319775253|ref|YP_004137741.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|317449844|emb|CBY86053.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047]
          Length = 874

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/914 (42%), Positives = 551/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGNHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA++ S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQSASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|309973694|gb|ADO96895.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 874

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/914 (42%), Positives = 554/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSLEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + +V G K   N  ++  VI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEVVGTKDLSNKSLH--VIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + K+ +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALTQV-KNSVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKVLRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AG+RRIEA+TG+ A   L  Q   L   A  LK     +  +++++ E+ +K
Sbjct: 681 IITENAVAAGVRRIEAVTGENAIEWLHNQQRILTQSADLLKSDVNTLAEKIQQLQEKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDSIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  +KK ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QA+     +L K
Sbjct: 859 VAQAVKVAQDWLNK 872


>gi|330816605|ref|YP_004360310.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327368998|gb|AEA60354.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 874

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/908 (42%), Positives = 539/908 (59%), Gaps = 55/908 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  +W+LLT  + L + 
Sbjct: 63  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYSWELLTSVYGLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY +D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK SIDTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARETGVADLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGGAYPELKEAEGRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +LD  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFLETIEHGMTILDAALAELDAKGAKQLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA                   K+ ATQ + Y   + +    ED 
Sbjct: 420 DEPAFDDAMARQREQARAAG-----------------KFKATQGLEYSGAKTTFHGYEDI 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                K            + A+   G  V++A +G++  VV D TPFYAE+GGQ+GD G 
Sbjct: 463 AFDDAK------------IVALYVGGTAVQQAQAGEQAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  VE+G L+   +L   ID   R +   NHS THL+
Sbjct: 511 LANAATRFAVEDTLKVQADVIGHHGTVEQGTLKVGDTLRAEIDAARRARTERNHSVTHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  D  RFD  H+ P++  E++ +E  VN  I  N P +   
Sbjct: 571 HKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMSDDEIRRVEAIVNAEILANSPGIVSN 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I    IV E
Sbjct: 631 MSYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVRRTGDIGFFKIVME 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D +L + AS LK     +  R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNALRYVQELDARLNTAASMLKAQPAELTQRIGQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +  D   V  ++  +   DSK L+  +D L+ K++   ++L 
Sbjct: 745 LAALKSKLASSQGDELAQQAVDVKGVQVLAATLDGADSKTLRETVDKLKDKLKHAAVVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862

Query: 889 IAGVASFL 896
           +AGV +++
Sbjct: 863 LAGVQAWV 870


>gi|213968623|ref|ZP_03396765.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301385518|ref|ZP_07233936.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|213926556|gb|EEB60109.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 874

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/911 (43%), Positives = 545/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+LP++
Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  LR E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R  ++D  K   G  +HH +V  G L   + +   +  + R    +NHSATHLL
Sbjct: 510 LLAGDTRFDVSDTTKTG-GASLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|260579906|ref|ZP_05847736.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|260093190|gb|EEW77123.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 874

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/914 (42%), Positives = 551/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q     + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VTQAIKVAQDWLNK 872


>gi|50084439|ref|YP_045949.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|59798530|sp|Q6FCT2|SYA_ACIAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49530415|emb|CAG68127.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 878

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/910 (44%), Positives = 543/910 (59%), Gaps = 52/910 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A+  AWD LT E    L +
Sbjct: 64  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALTFAWDFLTSEQWLGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EA+ +W K  GL+AD+IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAADRIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HLI+++ ++  +K EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 244 AVLQHVNSNYDIDLFQHLIKSACEIINVKDEGQPSL--RVVADHARSCCFLIADGVNPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   +  IE TL  E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIDVMGDAYPELKNDQARIEATLIRE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L   +++ G+  FKLYDT+G P D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKLLEGELTQL-SGKVIPGETVFKLYDTYGFPTDLTADIARERDLE-ID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            + F + +E QR RAR       +G     + S+ +  G TQF GY              
Sbjct: 420 EVGFEREMEAQRRRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T G   IV AI + GE V+E V G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 460 --------HATAGQGEIV-AIYKDGEQVDEVVEGDEALIVLNQTPFYAESGGQIGDTGLF 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D    ++ D  KK+ G FVH  IV  G L+    +   +    R   + NHSATHLLH
Sbjct: 511 KNDTGIFEVQDT-KKSGGAFVHQGIVTMGSLKAAQHVDAIVKADIRAATARNHSATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG+HV Q GS +  D LRFD  + +P++  +L+ IE  VN  +  N  V T ++
Sbjct: 570 AALRQILGTHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLVNAEVIANSAVTTELL 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I+SE
Sbjct: 630 DIESAKAKGAMMLFGEKYGDEVRVLSMGSVIDEHNFSIELCGGIHVQRTGDIGLFKIISE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRK 769
             + AGIRRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E+    +++
Sbjct: 690 GGVAAGIRRIEAVTGTKALEVVQKADADIQHINSLLKAQKDQTVERVQAAVEQTSALHKQ 749

Query: 770 LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           ++ ++ K       E LS    IA  + +   +  +D+K L+++ D+++ K++  +I+L 
Sbjct: 750 IEQLNQKLANFQAAELLSQVQNIAGRSTLITTVQNIDAKSLRNLHDSVKSKLEDAVIVLA 809

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+  + K S++  V +       A D+ +  A  L GG GGG+P +AQ G P   K +  
Sbjct: 810 GLEGD-KISLIASVAKQYTAHLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKFEHV 867

Query: 889 IAGVASFLKK 898
           IA + ++L++
Sbjct: 868 IAALPAWLEQ 877


>gi|304310760|ref|YP_003810358.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301796493|emb|CBL44701.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 876

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/908 (43%), Positives = 553/908 (60%), Gaps = 54/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL++F  NGH+++PSSSLIP NDPTL+FTN+GMV FK++F G++   Y+  TT
Sbjct: 3   TSEIRKAFLDYFAVNGHQIVPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDARDYRRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT E    L 
Sbjct: 63  SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIRFAWEFLTGERWLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY  D+EA+ +W +  G+  D+++RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 KEKLWVTVYATDDEAYDIWTQQVGVPVDRVVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PGS  E+G+RYIEIWN+VFMQF++        LPK S+DTGMGLER+
Sbjct: 183 IFYDHGEEIFGGPPGSKDEDGDRYIEIWNIVFMQFDRHPDGTLNPLPKPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF HL+ A  +VTG K   +  +  RV+ DH+R+ +FLIADG++P+
Sbjct: 243 AAVLQHVHSNYEIDLFAHLLDAVAKVTGAKDLQDKSL--RVVADHIRACAFLIADGVVPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRIMRRA+ +   LG  EP    L+ AL  EMG AYPEL + +  IE+T+  
Sbjct: 301 NEGRGYVLRRIMRRAIRHGNKLGAQEPFFYKLVAALAAEMGDAYPELRKLQAQIEKTILQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLD+GL +L+  L+     EI  GD+ FKLYDT+G P D+  DI   R L+ +
Sbjct: 361 EEEQFARTLDQGLRILEQELTAHQLTEI-PGDLVFKLYDTYGFPADLTADIARERDLS-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F Q +  Q+ R++  S   G+      +    +    T F GY    G        
Sbjct: 419 DMGGFEQRMAAQKERSQKSSQFAGN------YHDALDISTQTVFSGYSDTSG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V+A+  QG+ V    +GQ   VV DQTPFYAE+GGQ+GD G 
Sbjct: 465 ---------------QAKVEALFFQGKPVSSVSAGQDAIVVLDQTPFYAESGGQVGDVGL 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G   ++ D  K+  G  +HH ++  G +     +   ++ + R+ + +NHSATHLL
Sbjct: 510 IRKAGACFEVADTHKQG-GAHLHHGVLVSGQISVGDVVEAEVNAELRQAIRLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T   LRFD ++   ++ AEL+ IE  VND +  N  ++T I
Sbjct: 569 HAALRQVLGEHVHQKGSMVTAGRLRFDFSNPSALSPAELEQIERIVNDQVRGNSEIITEI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A A GA AL G KY D VRV+++  +     S  LCGGTH   TG+I L  ++SE
Sbjct: 629 MPIDQARAKGAMALFGEKYEDEVRVLTMGTD---CFSVELCGGTHARRTGDIGLFQLISE 685

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK---- 769
             + AG+RRIEA+TG  A + +  + ++L +++S +K +  NVVG+V  + E  R+    
Sbjct: 686 GGVAAGVRRIEAVTGAAALALITNRHQQLVAISSAVKGNDENVVGKVTALVERVRQLEKE 745

Query: 770 LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L+   A+R  +   E +S   ++A V  ++ ++   D+K L+ + D L+ K+   I++L 
Sbjct: 746 LEKQSAQRASRAGEEIISQSFELAGVKVLAAVLENQDTKALREMCDKLRDKLGDAIVVL- 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G S+E K +++  V++ L  +  A DL    A  + GG GGGRP MA +GG        A
Sbjct: 805 GASQEGKVNLVAGVSKTLSSKVKAGDLVNHVASQV-GGKGGGRPDMATAGGSQPENLGLA 863

Query: 889 IAGVASFL 896
           IA V  +L
Sbjct: 864 IASVRDWL 871


>gi|198283180|ref|YP_002219501.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667664|ref|YP_002425409.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247701|gb|ACH83294.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519877|gb|ACK80463.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 877

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/887 (44%), Positives = 534/887 (60%), Gaps = 39/887 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
              +IR  FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E   Y+   
Sbjct: 2   QAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L  
Sbjct: 62  SSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+ITVY+ED+EA  +W    G+   ++ R    DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 122 EKLWITVYEEDDEAADIWMNEIGIDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGPH 181

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           IPGG PGS EE G+RYIEIWNLVFMQF++ +      LPK S+DTGMGLER+A VLQ   
Sbjct: 182 IPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGVH 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NNYD DLFK LI A+  ++G  Y  +    ++ RV+ DH+R+ SFLI DG+LPANEGRGY
Sbjct: 242 NNYDTDLFKPLIAAAATISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ + R LG        L+  L  EMGSA+PEL +A+  +E  L  E+ RF 
Sbjct: 302 VLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRFR 361

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  ++ L     + G++ F+L DT G P+D+  DI   R L  +D+  + 
Sbjct: 362 ETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGYE 420

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQRSR+RA   G G   TE+++  L  +   T+F GY                   
Sbjct: 421 AAMAEQRSRSRAAWAGSGEVKTERVYHDLAMRLPVTEFTGYS------------------ 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+++ GE V    +G    V+ D+TPFY E+GGQ GD G    D  
Sbjct: 463 -----TCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSDDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD QK    + VH   +E G LR    +V +ID   RR  + +HSATHLLH AL  
Sbjct: 518 LFAVTDTQKPMGHLHVHLGRMESGRLRVGDMVVASIDEVARRATAAHHSATHLLHAALRN 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHV Q GS + P+ LRFD +  +P+T+A+L+ IE  VN  I  N+   TRI+   +A
Sbjct: 578 ILGSHVQQKGSLVNPERLRFDFSQPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAEA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA AL G KY D VRVV +     G  S  LCGGTHV + G+I +  I+SES + AG
Sbjct: 638 QALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAAG 692

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           IRRIEA+TG  A   +   +E+L++ A  LKV+   +  R+ +  E  R+L  +L   KR
Sbjct: 693 IRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVKR 752

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
                       +  DV  +  +I  +   D K L+  +D L+ ++  G+I+L G+ +EK
Sbjct: 753 DEAARAGADLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVEREK 812

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            A ++  V + L  R +A +L    A+ L GG GGGRP +AQ+G  N
Sbjct: 813 VA-LIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGN 857


>gi|296390743|ref|ZP_06880218.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 874

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419

Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RARA S  G+        + SL +  G T+F+GY  +          
Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +G   IV A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+G 
Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G  +HH +V RG L    ++   +D   R+  ++NHSATHLL
Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I SE
Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L  +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744

Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K      +DLS    +I     ++  +  +D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804

Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           G   E    V++V  VT+DL  +  A +L +  A    GG GGGRP MAQ GG +  K D
Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|46579502|ref|YP_010310.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|48428505|sp|P61700|SYA_DESVH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46448916|gb|AAS95569.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233316|gb|ADP86170.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 879

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 542/910 (59%), Gaps = 47/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA +LW K S + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G   + +R++EIWNLVFMQ++Q    +R  LPK SIDTGMGLER+  V 
Sbjct: 181 EHMTCGPDCGIGKC-DCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D D+F+ +IQ +  +  + Y  ++  +   RVI DH R+ +F+I DGILP+NE
Sbjct: 240 QGVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RL+G T+  +      +   MG  YPEL +    +   +R E+
Sbjct: 300 GRGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +RF +TLD+GL +L+  L+ L       + GD+AF+LYDT G PLDI+ DI   RG + +
Sbjct: 360 DRFNRTLDKGLSMLEDELATLSASGAAHVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-V 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   ++EQ+ RA+A   G G       +  L E+   ++FIGYD            
Sbjct: 419 DEDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDH----------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
             LC         G   IV  + +    VE   +GQK  +V ++TPFY  +GGQ GD G 
Sbjct: 468 --LC---------GEGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++++ D  K +  + VHH     G +  +  + LT+   +R   + NH+ THLL
Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH  P+T  EL ++E  VN +I  ++P+ T  
Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRVV++  E     S  LCGGTH+ +TG+  L  IVSE
Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLIVSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A   ++ Q  +   L++ LK   G +V RVE + +E R L+  
Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751

Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             +   Q       N+ D     +A V  ++  +   + K L+ +MD ++ K+ SGI  L
Sbjct: 752 MERAAAQATSGQGRNIMD-EATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACL 810

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K  ++I V++DL  RF A  L + ++A+V  GG GGGRP MAQ+GG N    D
Sbjct: 811 AAVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV--GGSGGGRPDMAQAGGTNPAGID 867

Query: 887 QAIAGVASFL 896
            A A + S +
Sbjct: 868 AAFAKLRSLI 877


>gi|329122821|ref|ZP_08251393.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|327472085|gb|EGF17523.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 874

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/914 (42%), Positives = 551/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             I+  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-INEQAFDRKMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q   + + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VAQAIKVAQDWLNK 872


>gi|163802982|ref|ZP_02196869.1| alanyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159173272|gb|EDP58100.1| alanyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 865

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/917 (43%), Positives = 555/917 (60%), Gaps = 78/917 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LTK   L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTKTLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +T+Y+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTIYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           E+E FG+TL+RG+ +L+  L ++   G D ++L+G+  FKLYDT+G P D+  D+   R 
Sbjct: 362 EEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARERE 421

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F +A+EEQR RAR A + G       K+          T+F GY   +G   
Sbjct: 422 FV-IDEEGFEKAMEEQRQRAREAGNFGTDYNAAIKV-------DAQTEFCGYTGTKG--- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               SS V A+  +G  V    +G K  +V  +TPFYAE+GGQ 
Sbjct: 471 --------------------SSSVAAMFVEGNEVASLSAGDKAIIVLGETPFYAESGGQC 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +    ++ D QK    I  HH I+  G+L  +  +   +D + R  +S+NHS
Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGNAI-AHHGIMAEGVLAKDDEVATIVDAERRAAISLNHS 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  + +N  
Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQVRRNHT 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L 
Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIW 764
            I SE  I AGIRRIEA+TG+ A   +  Q    +EKL   A            + + + 
Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQTTKYEEKLAESAQ-----------KAKSLE 733

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
           +E +KLQ   A  +   N+      K+ D+N    +I+ +   DSK L++++D ++ ++ 
Sbjct: 734 KEIQKLQDKMAAAE-SANI----MGKVQDINGTKALIAALEGADSKNLRTMVDDIKNQVG 788

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG+I+L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +
Sbjct: 789 SGVILLANVNGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTD 846

Query: 882 GNKADQAIAGVASFLKK 898
                +A+  V  +L++
Sbjct: 847 VAALPEAMKSVQPWLEE 863


>gi|120602949|ref|YP_967349.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|205830078|sp|A1VEQ6|SYA_DESVV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120563178|gb|ABM28922.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 879

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 542/910 (59%), Gaps = 47/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA +LW K S + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G   + +R++EIWNLVFMQ++Q    +R  LPK SIDTGMGLER+  V 
Sbjct: 181 EHMTCGPDCGIGKC-DCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D D+F+ +IQ +  +  + Y  ++  +   RVI DH R+ +F+I DGILP+NE
Sbjct: 240 QGVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RL+G T+  +      +   MG  YPEL +    +   +R E+
Sbjct: 300 GRGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +RF +TLD+GL +L+  L+ L       + GD+AF+LYDT G PLDI+ DI   RG + +
Sbjct: 360 DRFNRTLDKGLSMLEDELATLSASGAARVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-V 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   ++EQ+ RA+A   G G       +  L E+   ++FIGYD            
Sbjct: 419 DEDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDH----------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
             LC         G   IV  + +    VE   +GQK  +V ++TPFY  +GGQ GD G 
Sbjct: 468 --LC---------GEGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++++ D  K +  + VHH     G +  +  + LT+   +R   + NH+ THLL
Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH  P+T  EL ++E  VN +I  ++P+ T  
Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRVV++  E     S  LCGGTH+ +TG+  L  IVSE
Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLIVSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A   ++ Q  +   L++ LK   G +V RVE + +E R L+  
Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751

Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             +   Q       N+ D     +A V  ++  +   + K L+ +MD ++ K+ SGI  L
Sbjct: 752 MERAAAQATSGQGRNIMD-EATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACL 810

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K  ++I V++DL  RF A  L + ++A+V  GG GGGRP MAQ+GG N    D
Sbjct: 811 AAVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV--GGSGGGRPDMAQAGGTNPAGID 867

Query: 887 QAIAGVASFL 896
            A A + S +
Sbjct: 868 AAFAKLRSLI 877


>gi|51595175|ref|YP_069366.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|170025588|ref|YP_001722093.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186894190|ref|YP_001871302.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|59798514|sp|Q66E68|SYA_YERPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830293|sp|B2K5X9|SYA_YERPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830296|sp|B1JJA0|SYA_YERPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51588457|emb|CAH20065.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|169752122|gb|ACA69640.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186697216|gb|ACC87845.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 875

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/912 (43%), Positives = 569/912 (62%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A   VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++        
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD G
Sbjct: 467 ----------------HATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFSVTDTQKYGQAIG-HVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I++
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +    S  K+  +N +  ++S++D+ E   L++++D L+ ++ S II
Sbjct: 745 ELQQLKDQQAAQESASLSSSAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L   + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG +   
Sbjct: 803 VL-ATTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859

Query: 885 ADQAIAGVASFL 896
              A+A V +++
Sbjct: 860 LPAALASVEAWV 871


>gi|153950576|ref|YP_001402195.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|205830292|sp|A7FLR7|SYA_YERP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152962071|gb|ABS49532.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
          Length = 875

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/912 (43%), Positives = 569/912 (62%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A   VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++        
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD G
Sbjct: 467 ----------------HATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFSVTDTQKYGQAIG-HVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I++
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +    S  K+  +N +  ++S++D+ E   L++++D L+ ++ S II
Sbjct: 745 ELQQLKDQQAAQESASLSSSAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L   + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG +   
Sbjct: 803 VL-ATTTDDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859

Query: 885 ADQAIAGVASFL 896
              A+A V +++
Sbjct: 860 LPAALASVEAWV 871


>gi|221133281|ref|ZP_03559586.1| alanyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 860

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/897 (44%), Positives = 557/897 (62%), Gaps = 49/897 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL++F ++GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y    
Sbjct: 4   STAQIRQAFLDYFGQHGHQSVSSSSLVPHDDPTLLFTNAGMNQFKDVFLGAEQRNYSRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LTKE  L  
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWTFLTKELGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   GL  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 124 EKLLVTVYAEDDEAFAIWENEIGLPPEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG+PGS EE G+R+IEIWNLVFMQ+ +        LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGVPGSPEEDGDRFIEIWNLVFMQYNKSADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ID+F+ LI+A+ ++ G     +  +  RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDIFQALIKAAAEIVGTVDLDDKSL--RVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ AL  +MG AYPEL++   +IE+ LR E+E+F +T
Sbjct: 302 RRIIRRAVRHGYKLGAQDIFFYKLVSALTQQMGDAYPELVEQLPVIEKVLRVEEEQFSRT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG+ +L   L+ L  D ++ G+V FKLYDT+G P D+  D+     +  ID   F  A
Sbjct: 362 LERGMNILTQQLTELEGD-VVPGEVVFKLYDTYGFPADLTADVAREHNVR-IDETGFETA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ QR+RA+  S   G+   E +  +      AT F GY                     
Sbjct: 420 MQAQRARAQQAS-NFGTDYNEALKIT-----HATDFTGY--------------------- 452

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIR 540
            D T  V ++++ IV+    V    +GQK  V+ D T FYAE+GGQ GD+G   + D   
Sbjct: 453 -DKTTDVGTVLEIIVENTS-VTSIDAGQKGIVILDNTAFYAESGGQTGDSGVLKLNDAAV 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD QK A   F H  I  +  L    ++V  +D   R  + +NHSATHLLH AL  +
Sbjct: 511 FTVTDTQKLANA-FGHQGIA-KAKLSVGANVVTQVDDSRREAIKLNHSATHLLHAALREL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  + LRFD  H + +T+ +L SIE  VN  I QN  + T++M  ++A 
Sbjct: 569 LGEHVAQKGSLVDDEKLRFDFAHYEAVTTEQLISIERLVNAQIRQNHELTTKLMELDEAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           ASGA AL G KY+++VRVVS+     G  S+ LCGGTHVS TG+I L  I SES I +G+
Sbjct: 629 ASGAMALFGEKYDEKVRVVSM-----GNFSTELCGGTHVSRTGDIGLCKITSESGIASGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITG+ A +++  Q   L++ A+ LKV   N++ R+    +  +  +    + K Q
Sbjct: 684 RRIEAITGEAAINYVQEQAYLLQNAANILKVEPINLIERINNNQDLLKATEKSLNQAKQQ 743

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +  S        I + N +   + +V+ K LK ++D L++KI SGII+L G+  + K
Sbjct: 744 LASQQGSDLMNQVQVIKEHNVLVANLPDVEVKALKGMLDELKQKISSGIIVL-GVPGDGK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +++  VT DL+++  A +L    A  + GG GGGRP MAQ+GG      + A+  V
Sbjct: 803 VNLIAGVTGDLINKIKAGELVNFVASQV-GGKGGGRPDMAQAGGTKPENLEHALTSV 858


>gi|148284335|ref|YP_001248425.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|205830167|sp|A5CD03|SYA_ORITB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146739774|emb|CAM79640.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 891

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/889 (43%), Positives = 536/889 (60%), Gaps = 38/889 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N++ IRTTF+EFF+K GH    SSSL+P NDP+L F N+G+V FK+     E   Y  V 
Sbjct: 8   NINQIRTTFIEFFKKYGHHYASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121
           T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG    K   +QL W  LTKE  +D
Sbjct: 68  TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWSFLTKELFID 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL +TVY  D E  KLW+ I+GL   +IIRI T+DNFWSM   GPCGPC+EIF+D G+
Sbjct: 128 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 187

Query: 182 CIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGGLPG+ +E G RY+EIWN+VFMQ+EQ N+  R  L K  IDTG GLER+ATVLQ  
Sbjct: 188 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 247

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLFK+LI   E +T +K  G    +HR+I DHLR+S+FLIADG++P+N+GRGYV
Sbjct: 248 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 307

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM     LG  EP+M  L+P L  EMG  Y EL   + LI   LR+E+E+F  
Sbjct: 308 LRRIMRRAMNQIHQLGCKEPVMHQLVPGLINEMGDFYKELRIRQELITYLLRNEEEKFKT 367

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL LL+    +L     L+G +AFKLYDT+G P D+ QDIL  R ++ I+   F+Q
Sbjct: 368 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRSIS-INKTEFDQ 426

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RAR    G GS   + +   LKE++ AT+F+GY L +                
Sbjct: 427 NMLEQQNRARQLWKGQGSNKEQLLLEKLKEEFRATEFVGYSLYQA--------------- 471

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534
                     IV +++Q  + VE     Q      +  ++ +QTPFY ++GGQ+GD G  
Sbjct: 472 --------EGIVISLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQMGDIGII 523

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   + +TD  K      VH   +  G +     + + ID Q R QL I+HSATH+LH
Sbjct: 524 KNNECTIHVTDTIKLFGCTHVHICKIVSGKININAVVHMAIDKQYRTQLQIHHSATHILH 583

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG+H+ Q GS +  D LRFDV+H   I+   L  IE+ VN+II  N  V   IM
Sbjct: 584 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISREILTKIENRVNEIILNNTAVKLMIM 643

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + AIA GA AL   KY D VR +S+ E  D   +S  LCGGTHV  TG+I    I+SE
Sbjct: 644 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 703

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QL 772
           S+I AG+RR+EAI G+          E L  +A    V++  ++ +++ I EE   L + 
Sbjct: 704 SAIAAGVRRVEAIAGKHVIKQARRNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 763

Query: 773 IHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQS--GIIMLVG 829
           +H  +  QL + +     IA D+  +  +   ++  +L+ V  A+    ++   ++M+V 
Sbjct: 764 LHQLKYNQLILCEKDIQNIADDIGTIKLVYKNIEDYDLQIVRKAVSNTTKNIKNLVMVVI 823

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + +KK +++I V++++ ++  A +L +     LGG GGG    +AQ G
Sbjct: 824 SNNDKKNTIIIGVSDNITNKIQANNLVKEIINYLGGSGGGSAT-LAQIG 871


>gi|320155348|ref|YP_004187727.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930660|gb|ADV85524.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 860

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W +  G+ AD+IIRI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ ++ G +   N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+    KI     +    T+F GY   +G        
Sbjct: 420 DEAGFEKAMEEQRQRAR-EAGQFGTDYNAKI-----KTESETEFCGYTGTQG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          +S+V  I  +GE  +   +G K  ++  +TPFYAE+GGQ GD+G 
Sbjct: 466 ---------------NSVVAEIFVEGEAADSLSAGDKAIIILGETPFYAESGGQCGDSGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    Q+ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVSAIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T I
Sbjct: 570 HAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    +EKL+  A+  K  +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEAALEAIDAQARKFEEKLQDAANKAKSLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L       +   N+ D    +IA V  +   +   D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 L-----ASQASANLID-QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSAL 849

Query: 890 AGVASFL 896
           A V +++
Sbjct: 850 ASVDAWI 856


>gi|15596100|ref|NP_249594.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107100361|ref|ZP_01364279.1| hypothetical protein PaerPA_01001386 [Pseudomonas aeruginosa PACS2]
 gi|218893128|ref|YP_002441997.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|20532264|sp|Q9I553|SYA_PSEAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|9946804|gb|AAG04292.1|AE004524_9 alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|218773356|emb|CAW29168.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 874

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419

Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RARA S  G+        + SL +  G T+F+GY  +          
Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +G   IV A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+G 
Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G  +HH +V RG L    ++   +D   R+  ++NHSATHLL
Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGGAVKAEVDASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V T  
Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I SE
Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L  +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744

Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K      +DLS    +I     ++  +  +D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804

Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           G   E    V++V  VT+DL  +  A +L +  A    GG GGGRP MAQ GG +  K D
Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|167582193|ref|ZP_02375067.1| alanyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 874

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/911 (42%), Positives = 544/911 (59%), Gaps = 55/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+           + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G+L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSKLASSQGDELVQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 804 AAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861

Query: 888 AIAGVASFLKK 898
           A+AGV  ++++
Sbjct: 862 ALAGVKGWVEE 872


>gi|22124793|ref|NP_668216.1| alanyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45440238|ref|NP_991777.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108810954|ref|YP_646721.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145600311|ref|YP_001164387.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|153997648|ref|ZP_02022748.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162420472|ref|YP_001605466.1| alanyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165925794|ref|ZP_02221626.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936759|ref|ZP_02225326.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010167|ref|ZP_02231065.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213026|ref|ZP_02239061.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398342|ref|ZP_02303866.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421632|ref|ZP_02313385.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423275|ref|ZP_02315028.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467648|ref|ZP_02332352.1| alanyl-tRNA synthetase [Yersinia pestis FV-1]
 gi|218930326|ref|YP_002348201.1| alanyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229838925|ref|ZP_04459084.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896406|ref|ZP_04511574.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229899492|ref|ZP_04514633.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901170|ref|ZP_04516293.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270489353|ref|ZP_06206427.1| alanine--tRNA ligase [Yersinia pestis KIM D27]
 gi|20532253|sp|Q8ZBT8|SYA_YERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122385127|sp|Q1CLK9|SYA_YERPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830294|sp|A9R0V7|SYA_YERPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830295|sp|A4TQ52|SYA_YERPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21957617|gb|AAM84467.1|AE013691_6 alanyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45435094|gb|AAS60654.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774602|gb|ABG17121.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|115348937|emb|CAL21896.1| alanyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145212007|gb|ABP41414.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149289285|gb|EDM39365.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162353287|gb|ABX87235.1| alanyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165915408|gb|EDR34018.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922406|gb|EDR39583.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991074|gb|EDR43375.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205813|gb|EDR50293.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960551|gb|EDR56572.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050846|gb|EDR62254.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057445|gb|EDR67191.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229681895|gb|EEO77988.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229686984|gb|EEO79059.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695291|gb|EEO85338.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700480|gb|EEO88511.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|270337857|gb|EFA48634.1| alanine--tRNA ligase [Yersinia pestis KIM D27]
 gi|320016499|gb|ADW00071.1| alanyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 875

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/912 (43%), Positives = 569/912 (62%), Gaps = 62/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A   VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++        
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD G
Sbjct: 467 ----------------HATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFSVTDTQKYGQAIG-HVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I++
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           +LQ +  ++  Q +    S  K+  +N +  ++S++D+ E   L++++D L+ ++ S II
Sbjct: 745 ELQQLKDQQAAQESASLSSSAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L   + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG +   
Sbjct: 803 VL-ATTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859

Query: 885 ADQAIAGVASFL 896
              A+A V +++
Sbjct: 860 LPAALASVEAWV 871


>gi|219870706|ref|YP_002475081.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|219690910|gb|ACL32133.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 875

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/904 (42%), Positives = 552/904 (61%), Gaps = 55/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTSEIRQAFLEFFQSKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W +  G+ A+ I+RI  N       DNFW M +TGPCGP
Sbjct: 121 ALPKEKLWVTVYETDDEAYDIWNREIGVPAEHIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS+EE G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI+    +  +    N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQALIKEIASLLNVTDLDNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  +LG        L+P L   MG A   L Q +  I++ 
Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGNILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+++F +TL+RGL LL+  L+ + ++++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEDQFARTLERGLALLEDALTKV-ENKVLSGEVAFKLYDTYGFPLDLTADVCRERSI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR+RA+A S     GT       +    G+T+F GY++        
Sbjct: 418 T-IDEAGFEREMQAQRARAQASS---NFGTDYNYVIKVD---GSTEFKGYEVTE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                 C+           + V A+   G+ VE   SG+   VV D+T FY E+GGQ+GD
Sbjct: 465 ------CE-----------ATVVALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK  + +F H   +  G L     +   ++   R  +++NHSAT
Sbjct: 508 SGVIASEICNFEVNDTQKYGQ-VFGHIGQLASGTLSVGDKVKAEVNATRRHAITLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ A+L+ IE  +N  I +N+ V 
Sbjct: 567 HLLHSALRQVLGDHVAQKGSLVSENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A   GA AL G KY DRVRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 TEVMDLESAKQKGAMALFGEKYGDRVRVVDMT----AAFSVELCGGTHVKQTGEIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AG+RRIEA+TG+ A   L  Q + L   A  LK    ++V +++++ E+ +K 
Sbjct: 683 VSEGAVAAGVRRIEAVTGENAIGLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKV 742

Query: 770 ---LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E      +I  VN +   +  VD+K L++++D L+ ++ S +I
Sbjct: 743 EKELQQLKDKLAAQAGGELAKQAQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + E K ++++ VT+DL D+ NA +L  L A+ + GG GGGR  MA +GG      
Sbjct: 803 VFATQTDE-KVNLIVGVTKDLTDKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENI 860

Query: 886 DQAI 889
            QA+
Sbjct: 861 TQAL 864


>gi|307825703|ref|ZP_07655920.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307733280|gb|EFO04140.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 870

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/900 (42%), Positives = 552/900 (61%), Gaps = 46/900 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +RT FLEFF++ GH + PSSSLIP NDPTL+FTN+GMV FK++F G++   Y    T 
Sbjct: 7   AQLRTAFLEFFRERGHAIQPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDHRDYNKAATS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AWD LTKE ++   +
Sbjct: 67  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWDFLTKELEIPAEK 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ITV+DED EA K+W    G+S  +  RI   DNFWSM + GPCGPC+EIF+D G  I 
Sbjct: 127 LWITVFDEDSEAEKIWLDDVGVSPVRFSRIGAKDNFWSMGDVGPCGPCTEIFYDHGADIA 186

Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS  E+G+RYIEIWNLVFMQ+++        LPK S+DTGMGLER+A VLQ   +N
Sbjct: 187 GGPPGSPDEDGDRYIEIWNLVFMQYDRSADGSLTPLPKPSVDTGMGLERIAAVLQGVHSN 246

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF+ L++A+ ++ G      + +  RVI DH+RS +FLIADG++P+NEGRGYV+RR
Sbjct: 247 YEIDLFQKLLKAAAELAGTSDLTQSSL--RVIADHIRSCAFLIADGVMPSNEGRGYVVRR 304

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  +     L+  L  EMG A+PEL  A+  +E  L+ E+ERF +TL+
Sbjct: 305 IIRRAIRHGYRLGIRDVFFYKLVAPLAEEMGEAFPELKAAQEQVERVLKKEEERFAETLE 364

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ +L+  ++ + +  ++ GD  F+LYDT+G P+D+  D      L  +D   F  A+ 
Sbjct: 365 QGMKILEACVAKM-EGSVIPGDTVFQLYDTYGFPVDLTADFARENNLT-VDHAGFETAMS 422

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR RAR+ S   G+   + I    +     T+F GYD L        D +V        
Sbjct: 423 AQRERARSAS-SFGADYDQDIKLDAQ-----TEFTGYDHL--------DDQVH------- 461

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   +  + ++G+ V+    G++  V+ D+TPFYAE+GGQ+GD G    DG   ++
Sbjct: 462 --------IIGLYKKGQPVDSLEDGEEGVVILDKTPFYAESGGQIGDCGKIEADGAVFEV 513

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TD QK+   +F+H   +  G L         +   +R    +NHSATHLLH AL  +LG 
Sbjct: 514 TDTQKQGGNLFLHKGKLLTGTLTNGQLCDARVSAADRTATELNHSATHLLHAALRQVLGD 573

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS + P+ LRFD +H +P+T++E+ ++E  VN+ I  N PV  ++M ++DA+ +G
Sbjct: 574 HVAQKGSLVNPERLRFDFSHFEPVTASEISTVERIVNEQIRANNPVSAQVMAKDDAVKAG 633

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRV+ +     G  S+ LCGGTHV   G+I    I++E+ + AG+RRI
Sbjct: 634 AMALFGEKYGDEVRVLKI-----GEFSTELCGGTHVERAGDIGCFKIINETGVAAGVRRI 688

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781
           EA+TG      + G+D  L S+A  +K +      +VE++ E+ R L  QL     KL  
Sbjct: 689 EAVTGGGCIEWIAGRDHALASIAGLVKSAPEKTPEKVEQLIEKNRLLEKQLERLNAKLAS 748

Query: 782 NVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +  +    +  DV     ++  +  VD K LK ++D L+ K+ S  I+L  +  + K S+
Sbjct: 749 SAGNELGAQAVDVGGIKVLAVKLDGVDPKSLKDMVDQLKNKLGSAAIVLAVVDGD-KVSL 807

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT+D + R  A DL    A  + GG GGGRP MAQ+GG + +    A+A V +++K+
Sbjct: 808 IAGVTKDQMGRIKAGDLVNFVATKV-GGKGGGRPDMAQAGGNDPSGLADALAQVPAWVKE 866


>gi|24374938|ref|NP_718981.1| alanyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|38372525|sp|Q8EBS1|SYA_SHEON RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24349653|gb|AAN56425.1|AE015779_2 alanyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 874

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/907 (42%), Positives = 554/907 (61%), Gaps = 58/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 6   AALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRATTA 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L + R
Sbjct: 66  QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLMLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 126 LCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 185

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A +
Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+NEG
Sbjct: 246 MQGVHSNYEIDIFRALIAKAAEIIGVADLSNKSL--RVIADHIRSCAFLVADGVMPSNEG 303

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E+E
Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAEEE 363

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +TL+RGL +LD  L+ L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D  
Sbjct: 364 QFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VDEA 421

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ EQRSRA+A      +G     + +  +    T F GY  L G           
Sbjct: 422 GFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG----------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       ++ V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  + 
Sbjct: 465 ------------NAKVTALYLNGESVPAINTGDDAVVVLDVTPFYAESGGQVGDKGVLMA 512

Query: 537 DGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GI   + D QK  +A G   H   +  G L     L   +D + R +  +NHS THLLH
Sbjct: 513 QGIEFTVNDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPFELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            I AG+RRIEA+TG  A +++  Q  +L+  AS LK    +VV +++   ++ ++L  ++
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAASLLKADAHSVVTKLKVQLDKMKQLEKEM 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829
              K KL              VN ++ +I +++  E   L+ + D L++K++S II+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLIAKIKAGELVAMVATQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFL 896
           + V  ++
Sbjct: 863 SQVLPWI 869


>gi|322514279|ref|ZP_08067338.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119833|gb|EFX91853.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 874

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/904 (42%), Positives = 543/904 (60%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSLQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLPG+ EE G+RYIE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDTFWGGLPGTPEEDGDRYIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEILTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+  +  I        G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMSAQRERAKASS-NFGTDYSNVIKVD-----GQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIHSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     ++D QK  + +F H   +  G L     +   ++   R+ ++ NHSAT
Sbjct: 508 NGLISTEICEFTVSDTQKYGQ-VFGHVGQLTSGSLAIGDKVTAHVEINRRQAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ D LRFD +  + IT A+L+ IE  VN  I +N+ VV
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSEDALRFDFSQPEAITKAQLEEIERIVNRNIRENIQVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 IETMDIESAKQKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQHTGEIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AG+RR+EA+TG++A   L  Q   ++  A  LK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGVRRVEAVTGEKAMDWLHNQQRVIQQSAELLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E      +I  VN +   +  V++K L++++D L+ + ++ I+
Sbjct: 742 EKELQQLKDKFAAQAGSELAKQASQINGVNVIVQKLEGVETKSLRTMVDDLKNQFENAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   + K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GSVADDKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQHL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DSAL 863


>gi|113868727|ref|YP_727216.1| alanyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123133735|sp|Q0K823|SYA_RALEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113527503|emb|CAJ93848.1| Alanyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 874

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/910 (43%), Positives = 544/910 (59%), Gaps = 59/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   T+
Sbjct: 3   VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK + L   
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILYAWELLTKTYQLPAE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSEIF
Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIE+WNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF+ LI+A+ + T +     N +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG   P    ++  L  +MG AYPEL +A+  + E L++E+
Sbjct: 301 GRGYVLRRIIRRAIRHGYKLGQKTPFFHKMVADLVEQMGQAYPELAEAQSRVTEVLKAEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ERF +T++ G+ +LD  L+ L    GK   L+G++AFKL+DT G PLD+ QD+ C     
Sbjct: 361 ERFFETIENGMSILDAALADLKLKGGK--TLDGELAFKLHDTFGFPLDLTQDV-CREQEI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D  +F+ A+  QR +ARA           K+   L+     T F GY+ L        
Sbjct: 418 GVDEAAFDAAMNRQREQARA-------AGKFKMAAGLEYTGDKTVFHGYEKLE------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
               L Q           + V A+   G  V     GQ   VV D TPFYAE+GGQ GD 
Sbjct: 464 ----LPQ-----------ARVTALYVDGAAVNAMQPGQTGVVVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD  K    +F H   +E G L+   ++   +D Q R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVTDTTKIQADVFGHQGTLEGGALKVGDAVSAQVDAQRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD +H+  +T  +++ +E+ VN  I +N     
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDEQIRRVEEIVNAEILRNDDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            E  + AGIRR+EAITG  A  +L G D +L   A+ LK     +V R+ ++ ++ R L 
Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQGLDARLNEAAAVLKAQPSELVPRIGQVQDQVRALE 742

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIM 826
            +L   K KL  +  D    +  D+  +  + +++D    K L+  MD L+ K++S  I+
Sbjct: 743 KELERLKSKLAASQGDELAAQAVDIKGLKVLAAQLDGADVKTLRETMDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +S + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LGAVS-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFL 896
           QA+AGV  ++
Sbjct: 861 QALAGVGEWV 870


>gi|319427213|gb|ADV55287.1| alanyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 874

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/909 (43%), Positives = 561/909 (61%), Gaps = 58/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWSFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYTELVG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQATG-HQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
           A+ K +L     S   + D   VN ++ +I ++D  E   L+ + D L++K++S II+L 
Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGINVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL- 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G ++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D 
Sbjct: 803 GTAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 861 ALAQVLPWI 869


>gi|16272755|ref|NP_438974.1| alanyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|1174496|sp|P43815|SYA_HAEIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1573826|gb|AAC22473.1| alanyl-tRNA synthetase (alaS) [Haemophilus influenzae Rd KW20]
          Length = 874

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/914 (42%), Positives = 550/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVR GGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID  +F++ +E QR+RA+A S  G+   +  ++        G T+F GY  +      
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+G
Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSA
Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV
Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K
Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  +Q     + S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+
Sbjct: 741 VEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I    I  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLEN 858

Query: 885 ADQAIAGVASFLKK 898
             QAI     +L K
Sbjct: 859 VTQAIKVAQDWLNK 872


>gi|292491239|ref|YP_003526678.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579834|gb|ADE14291.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 873

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/911 (43%), Positives = 558/911 (61%), Gaps = 60/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F+  GHE++PSS L+P NDPTL+FTN+GMV FK++F G+E   Y+ 
Sbjct: 1   MKSSAELRKIFLDYFRHQGHEIVPSSPLVPANDPTLLFTNAGMVQFKDVFLGRETRAYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W LLT+   L
Sbjct: 61  AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYGWALLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+ITV+++D+EA  +W K  G+S ++  R    DNFWSM +TGPCGP SEIF+D G
Sbjct: 121 PPERLWITVFEDDDEAANIWLKEIGVSPERFARCGAEDNFWSMGDTGPCGPSSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS E EG+RY EIWNLVFMQ+++  +     LPK S+DTGMGLER+A V+Q 
Sbjct: 181 SGIAGGPPGSPEQEGDRYTEIWNLVFMQYDRNKEGHLSPLPKPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF++LI A   ++G++ +     + RVI DH+RS +FLI DG+ P+NEGRGY
Sbjct: 241 VHDNYDIDLFRNLITAITALSGIQNQ--EPTSLRVIADHIRSCAFLIVDGVQPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL QA+  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYQLVQPLAVEMGEAYPELPQAQSRVERMLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL +L+  + +L   +++ G+  F+LYDT G P+D+  DI   RGL  +D+  F 
Sbjct: 359 ETLDQGLKILEQDIENL-SGQVIPGETVFRLYDTFGFPVDLTADIARERGLT-LDMRGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-------TQFIGYDLLRGSKFMKED 472
            A+ +QR RARA S               K +YG        T+FIGY+ LRG       
Sbjct: 417 HAMAKQRERARAAS-------------RFKIEYGPDLQLDLETEFIGYEHLRG------- 456

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                         G  + +  + +  E VE+  +G+K  VV D+TPFYAEAGGQ+GD G
Sbjct: 457 -------------EGQVTALFRVAETTEAVEQLSAGEKGIVVLDRTPFYAEAGGQVGDQG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G    +TD QK+    + H   V  G LR    +   ++  +R    +NHSATHL
Sbjct: 504 TLRAPGGLFNVTDTQKQG-AAYAHLGEVRLGELRVGDLIQAEVERAHRAPTRLNHSATHL 562

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH +L  +LG HV+Q GS +T D LRFD +H + +   +L+ IE  VN  I  +LPV T+
Sbjct: 563 LHASLRQVLGEHVAQKGSLVTADRLRFDFSHFEALEPEQLRQIERLVNAQIRADLPVETQ 622

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  ++A+ +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG I L  I++
Sbjct: 623 IMPLQEALDAGVVALFGEKYGEQVRVLRM-----GNFSVELCGGTHVDRTGNIGLFKIIN 677

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--- 769
           E+ I AGIRRIEA+TG+ A   +   + +L+++A  LK S+ +V+ ++E + ++ R+   
Sbjct: 678 ETGIAAGIRRIEAVTGEAALRWVEENEARLEAVAGLLKASRESVIDKLELLQQQARQQEK 737

Query: 770 -LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +Q + A R       DLS    +I  V  ++  I  VD K L++  D L+ K+ +  I+
Sbjct: 738 EIQSLKA-RLASAGGSDLSAQAQEIQGVKVLAARIDGVDIKTLRNTADQLKSKLATAAIV 796

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E K  ++  VT++ +++  A DL    A+ + GG GGGRP MAQ+GG + +K D
Sbjct: 797 L-GTVVEGKVVLIAGVTKNAINQIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGKDPDKLD 854

Query: 887 QAIAGVASFLK 897
            A+  V  +++
Sbjct: 855 AALKSVPEWVE 865


>gi|295677107|ref|YP_003605631.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436950|gb|ADG16120.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 874

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/910 (42%), Positives = 542/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAADIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L +
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTEVYKLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 DKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LIQA+ + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQALIQAAGRETGVTDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL QA+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGDAYPELAQAEKRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+ C      
Sbjct: 360 EERFFETIEHGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K+   L+     T F GY+     + + +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V++  +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVDGASVQQVQAGQPAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANASTRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + R
Sbjct: 570 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV+ +G+I    IV 
Sbjct: 630 LMSYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVNRSGDIGFFKIVM 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   + ++ + A+ LK     +  R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELEARVNAAAAVLKAQPAELTQRIGQVQDQVKALEK 743

Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D       ++  V+ ++  +   D K L+  +D L+ K++S  I+L
Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|315181173|gb|ADT88087.1| alanyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 860

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/908 (42%), Positives = 547/908 (60%), Gaps = 69/908 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY  D+EAF +W K  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PGS EE G+R+IEIWN VFMQF +    +   LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+  V G  Y+  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   E L+G+  FKLYDT+G P D+  D+   RG   I
Sbjct: 362 EEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQR RAR       +G     +  L +  GAT+F GY             
Sbjct: 420 DEAGFEAAMEEQRQRARE------AGHFGTDYNQLIKVEGATEFCGY------------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G S+I +  V +G+      +G K  +V ++TPFYAE+GGQ GD G 
Sbjct: 461 ---------SATQGESTITEMFV-EGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  HH ++  G+     ++   +D + R  +S+NHSATHLL
Sbjct: 511 LKTDAGVFHVVDTQKLGNAI-AHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +  +GLRFD +H + +++AELK +E  VN+ +  N  + T I
Sbjct: 570 HAALRRVLGEHVMQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A A GA AL G KY+++VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S I AGIRRIEA+TG+ A  +L  Q  + +S              +V ++  + + L  +
Sbjct: 685 SGIAAGIRRIEAVTGEAALDYLDAQHAQFES--------------KVADMASKAKGLEKE 730

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
           + H K KL          K+ D+  +  +++++   D+K L+ ++D L+ ++ SGIIML 
Sbjct: 731 IQHLKDKLAAKESASLTSKVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLG 790

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 791 NVA-DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAVALPSA 848

Query: 889 IAGVASFL 896
           +  V +++
Sbjct: 849 LESVDAWI 856


>gi|153835573|ref|ZP_01988240.1| alanyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148867838|gb|EDL67069.1| alanyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 860

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/912 (43%), Positives = 551/912 (60%), Gaps = 73/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          SS V A+  +G  VE   +G K  +V  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 IRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  I +N  + T +
Sbjct: 570 HAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    +EKL   A            + + + +E +K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDAIEAQTAKYEEKLAESAQ-----------KAKSLEKEIQK 733

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
           L     K K+          K+ D+N    +I+ +   D+K L++++D ++ ++ SG+I+
Sbjct: 734 L-----KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVIL 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     
Sbjct: 789 LANVN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALP 846

Query: 887 QAIAGVASFLKK 898
            AI  V  +L++
Sbjct: 847 AAIQTVQPWLEE 858


>gi|186476371|ref|YP_001857841.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|205830006|sp|B2JK72|SYA_BURP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|184192830|gb|ACC70795.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 874

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/908 (42%), Positives = 539/908 (59%), Gaps = 55/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   TT 
Sbjct: 4   AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRATTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L + +
Sbjct: 64  QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A V
Sbjct: 184 DHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI+A+ + T +    NN +  +V+ DH+R+ SFLI DG++P NEG
Sbjct: 244 LQHVHSNYEIDLFQALIKAAARETNIDDLSNNSL--KVVADHIRACSFLIVDGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL  A+  +   LR E+E
Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAQMGGAYPELKDAEQRVTHVLRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T++ G+ +L+G L+ L     + L+G+VAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 362 RFFETIEHGMSILEGALADLDSKGGKTLDGEVAFKLHDTYGFPLDLTADVCRERGVT-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F++A+  QR +ARA           K+   L      T F GY+     + + +D +
Sbjct: 421 EPAFDEAMARQREQARA-------AGKFKMAQGLDYTGAKTTFHGYE-----EIVFDDAR 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+   G  V E   GQ+  VV D TPFYAE+GGQ+GD G  
Sbjct: 469 -----------------VTALYVDGASVNEVTKGQQAVVVLDHTPFYAESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
               IR  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL+H
Sbjct: 512 ANASIRFGVVDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + R+M
Sbjct: 572 KALREVLGGHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVRVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV+ TG+I L  IV E 
Sbjct: 632 AYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVNRTGDIGLFKIVMEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+  + ++ + L  +L
Sbjct: 686 GVAAGIRRVEAITGDNAVRFVQELDARIHAAAAALKAQPSELTQRISMVQDQVKALEKEL 745

Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  DV+    ++  +   D K L+  +D L+ K++S  I+L  
Sbjct: 746 GALKSKLASSQGDELASQAIDVSGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIVLAS 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A+
Sbjct: 806 V-EGGKVSLIAGVTADTSKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863

Query: 890 AGVASFLK 897
           AGV  +++
Sbjct: 864 AGVKGWVE 871


>gi|303253696|ref|ZP_07339833.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247624|ref|ZP_07529667.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302647421|gb|EFL77640.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855894|gb|EFM88054.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 874

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/904 (42%), Positives = 542/904 (59%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I        G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|323492975|ref|ZP_08098113.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312806|gb|EGA65932.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 860

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/913 (42%), Positives = 552/913 (60%), Gaps = 75/913 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF++W K  G+ AD+I+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFEIWNKTVGVPADRIVRIGDKEGGKQYESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +  G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKAAAETIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGTAGEELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERDFA-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+EEQR RAR A   G     T K           T+F GY   +G       
Sbjct: 420 DEEGFEKAMEEQRQRAREAGQFGTDYNATIKT-------EAETEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S V  I  +GE  E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------NSNVAEIFVEGEAAESLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAVVDAERRASISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL T+LG HV+Q GS + P+ LRFD +H + +T AELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRTVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           E  I AGIRRIEA+TG+ A   +  Q    +EKL   A+           + + + +E +
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEEKLAESAT-----------KAKSLEKEIQ 732

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
           KL     K K+          K  ++N +  +I+ +   DSK L++++D ++ ++ SG++
Sbjct: 733 KL-----KDKMAAAESANIMGKAQEINGVKVLIAGMEGADSKNLRTMVDDIKNQMGSGVV 787

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ML  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +  
Sbjct: 788 MLANVN-DGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDAL 845

Query: 886 DQAIAGVASFLKK 898
             AI  V  +L++
Sbjct: 846 PAAIQSVQPWLEE 858


>gi|156975767|ref|YP_001446674.1| alanyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|205830285|sp|A7MYT5|SYA_VIBHB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156527361|gb|ABU72447.1| hypothetical protein VIBHAR_03511 [Vibrio harveyi ATCC BAA-1116]
          Length = 865

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/916 (43%), Positives = 553/916 (60%), Gaps = 76/916 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           E+E FG+TL+RG+ +L+  L ++   G D ++L+G+  FKLYDT+G P D+  D+   R 
Sbjct: 362 EEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARERE 421

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
            A ID   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G    
Sbjct: 422 FA-IDEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG---- 470

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              SS V A+  +G  VE   +G K  +V  +TPFYAE+GGQ G
Sbjct: 471 -------------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCG 511

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSA
Sbjct: 512 DAGEIRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSA 570

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  I +N  +
Sbjct: 571 THLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVI 630

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  
Sbjct: 631 ETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFK 685

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWE 765
           I SE  I AGIRRIEA+TG+ A   +  Q    +EKL   A            + + + +
Sbjct: 686 ITSEGGIAAGIRRIEAVTGEGALDAIEAQAAKYEEKLAESAQ-----------KAKSLEK 734

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           E +KL     K K+          K+ D+N    +I+ +   D+K L++++D ++ ++ S
Sbjct: 735 EIQKL-----KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGS 789

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+I+L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + 
Sbjct: 790 GVILLANVN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDV 847

Query: 883 NKADQAIAGVASFLKK 898
                AI  V  +L++
Sbjct: 848 AALPAAIQTVQPWLEE 863


>gi|90580351|ref|ZP_01236158.1| alanyl-tRNA synthetase [Vibrio angustum S14]
 gi|90438653|gb|EAS63837.1| alanyl-tRNA synthetase [Vibrio angustum S14]
          Length = 874

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 547/905 (60%), Gaps = 57/905 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT Q+
Sbjct: 8   IRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRATTAQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L   RL 
Sbjct: 68  CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLPADRLV 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSEIFFD 178
           +TVY+ D+EAF++W K  G+ AD+I+RI          +DNFW M +TGPCGPC+EIF+D
Sbjct: 128 VTVYETDDEAFEIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCTEIFYD 187

Query: 179 QGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+A ++
Sbjct: 188 HGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIAAIM 247

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NY+ID+F+ LI+ + +V G +   N  +  RV+ DH+RS ++LI+DG++P+NEGR
Sbjct: 248 QGVHSNYEIDIFQTLIKEAAKVIGFEDLSNQSL--RVVADHIRSCAYLISDGVMPSNEGR 305

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+ E++ 
Sbjct: 306 GYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLKIEEDN 365

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG+TLDRGL +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   RG   ID   
Sbjct: 366 FGRTLDRGLTILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFT-IDEDG 423

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F  A+EEQR RAR A + G+      K+          T+F GY                
Sbjct: 424 FEAAMEEQRQRARDAGNFGVDYNDAIKV-------DAETEFCGY---------------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T+G   IV A+ + G  V+   +G++  VV   TPFYAE+GGQ GD+G    
Sbjct: 461 ------SATDGEGEIV-ALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSGILTA 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+   + D QK    I  H   V  G L     L  ++D   R  +S+NHSATHL+H A
Sbjct: 514 EGVLFNVADTQKFGAAIG-HKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHLMHAA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV+Q GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T IM+ 
Sbjct: 573 LRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHAIETNIMDI 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+SES I
Sbjct: 633 EAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILSESGI 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AGIRRIEA+TG  A   +  +D  L   A  +K    +VV +VE +    ++L  ++  
Sbjct: 688 AAGIRRIEAVTGASAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEKEIQQ 747

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
            K KL         ++  ++N +  +I+++   D+K L+ ++D L+ ++ SG+++L  +S
Sbjct: 748 LKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLLGNVS 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      A+  
Sbjct: 808 -DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPAALET 865

Query: 892 VASFL 896
           VA +L
Sbjct: 866 VAPWL 870


>gi|315125679|ref|YP_004067682.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315014193|gb|ADT67531.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 866

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/904 (44%), Positives = 554/904 (61%), Gaps = 56/904 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   T
Sbjct: 5   TTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L +
Sbjct: 65  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +T+Y +DEEAF  W    GL  D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 EKLLVTIYHDDEEAFGYWANDIGLPEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 184

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG+ EE G+R+IEIWNLVFMQ+ +Q+      LPK S+DTGMGLER++ +LQ   
Sbjct: 185 IWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMEPLPKQSVDTGMGLERISAILQGVH 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF+ LI A+  VT  +   +  +  RV+ DH+RS +FLI+DG++P+NEGRGYVL
Sbjct: 245 SNYEIDLFQGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVL 302

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGKT
Sbjct: 303 RRIIRRAVRHGNKLGAKGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKT 362

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL +L+  LS L  D ++ GD+ FKLYDT+G P D+  D+   R +  ID   F   
Sbjct: 363 LERGLAILEESLSDLTGD-VIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEAC 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  QR  A+  +   G+   +++     +K+  T F GYD                    
Sbjct: 421 MAVQRKTAQ-QAGKFGADYNDQL---KSDKH--TDFKGYD-------------------- 454

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
              +   S  V  I   GE V     GQ+  +V D+TPFYAE+GGQ+GD+G     G   
Sbjct: 455 ---STHYSGTVVEIFAGGEAVSLLEDGQQGIIVLDRTPFYAESGGQIGDSGTITVAGGEF 511

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +T+  K     F HH  V+ G +     +  TID   R  +  NH+ATH+LH AL  +L
Sbjct: 512 VVTNTTKLGNA-FAHHGTVQ-GRIGVNDKVDATIDDARRDSIKKNHTATHILHEALRQLL 569

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HVSQ GS + PD LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA A
Sbjct: 570 GEHVSQKGSLVQPDRLRFDFSHFEAVTKQELREIERVVNDEIRRNFALNTELMAIDDAKA 629

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+R
Sbjct: 630 KGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVR 684

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+    K+  QL
Sbjct: 685 RIEAVTGAEAIAYVSEQEQQLADVAALVKGDNASVLEKVTALLEKSKGLE----KQVAQL 740

Query: 782 NVEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832
           N +  S         + ++N +  +++ V   +SK L+ ++D L+ KI SG+I L G++ 
Sbjct: 741 NDKLASAAGASLLDSVVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVAS 799

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K S++  VT+DL  +  A +L    A  + GG GGGRP MAQ+GG        A+  V
Sbjct: 800 GDKVSLIAGVTKDLTGKVKAGELVNHMAGQV-GGKGGGRPDMAQAGGSEPQNLTAALDSV 858

Query: 893 ASFL 896
            ++L
Sbjct: 859 TAWL 862


>gi|307245509|ref|ZP_07527596.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306853568|gb|EFM85786.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
          Length = 874

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 544/905 (60%), Gaps = 58/905 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I        G T FIGYD L       
Sbjct: 418 T-IDKAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           +G  I  GI    + D QK  + +F H   +  G L     +  T+D   R  ++ NHSA
Sbjct: 508 SGL-ISTGICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V
Sbjct: 566 THLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
               M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  
Sbjct: 626 TIETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++
Sbjct: 681 LVSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKR 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I
Sbjct: 741 TEKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAI 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG     
Sbjct: 801 VVF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQN 858

Query: 885 ADQAI 889
            D A+
Sbjct: 859 LDNAL 863


>gi|303249632|ref|ZP_07335837.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307252204|ref|ZP_07534102.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651444|gb|EFL81595.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860348|gb|EFM92363.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 874

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/904 (42%), Positives = 543/904 (60%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I     +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGADYNNVI-----KVEGQTDFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|95928611|ref|ZP_01311358.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95135401|gb|EAT17053.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 880

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/908 (41%), Positives = 551/908 (60%), Gaps = 44/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+++F+K+GH  +PSSSLIP NDPTL+FTN+GM  FK++F G E   Y+ 
Sbjct: 1   MLTANEIRARFIQYFEKHGHRAVPSSSLIPHNDPTLLFTNAGMNQFKDLFLGAETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+  W+ LTKE  L
Sbjct: 61  ATSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKQDAIRFGWEFLTKEMKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               L+++V+++D+EAF +W+   G+  ++I+R+   DNFW+M +TGPCGPCSEI  DQG
Sbjct: 121 PVEDLWVSVFEDDDEAFNIWRDEIGVREERILRLGEKDNFWAMGDTGPCGPCSEIHIDQG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G   + +R++E+WNLVFMQ+E+        LPK SIDTGMGLER+  V+
Sbjct: 181 EEMTCGPDCALGVC-DCDRFLELWNLVFMQYERSADGTLSPLPKPSIDTGMGLERITAVV 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NYD D  + +I   EQ+ G  Y  N    V+ RVI DH R+++FLIADG+LP+NE
Sbjct: 240 QGVKSNYDTDSLRAIIAHIEQLAGKTYGDNEDADVSMRVIADHSRATAFLIADGVLPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRIMRRA  +A++LG+ EP++      +   M  AYPEL +    + + +++E+
Sbjct: 300 GRGYVLRRIMRRAARHAKMLGFDEPVLFKTATFVMESMKDAYPELEERLDYVAKVVKNEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL  GL +L+  +  L      ++ GD  F+LYDT G P+D+  DI+  +    +
Sbjct: 360 ERFIQTLGNGLRILNEEIDTLKSKGQTVIPGDTVFRLYDTFGFPVDLTADIVEGQNFT-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +E+QR +AR +  G G      ++  L E+  + +F GYD  +   F     
Sbjct: 419 DEAGFETCMEQQRQKARENWKGSGEEGIGAVYKQLAEQGMSCEFTGYD--KCDDF----- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+++ G+ VE   +G+ VE++   TPFY E+GGQ GD G 
Sbjct: 472 ----------------GTVLALLKDGQQVESVSAGETVEIITSITPFYGESGGQSGDGGT 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +G++  I++  K    + VH A ++ G L    +  L +D + R   ++NHSATH+L
Sbjct: 516 LTAEGVKATISETLKPLPNLHVHVATIDEGTLSVGQAAELHVDVEQRTACALNHSATHIL 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
              L  +LG HV Q GS +TPD LRFD  H   +T  E++ +E+ VN  I +N  V+T +
Sbjct: 576 QAVLCEVLGDHVKQAGSQVTPDRLRFDFIHFSALTPEEIQQVEEKVNQRIRENAGVMTDV 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN +DA+ +GA AL G KY D VRVV +     G  S  LCGGTHVS+TG I L  IV E
Sbjct: 636 MNTDDAVKAGATALFGEKYGDSVRVVRM-----GDFSMELCGGTHVSATGNIGLFKIVQE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AG+RRIEA+TG  A S +  Q++ +  LA+ +K     +  R++++ E  ++L+  
Sbjct: 691 AGIAAGVRRIEAVTGSGALSTVREQEQMIGDLAALVKSDPSQLATRLKKLMEHQKELERQ 750

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  + +L+ +           I +V  ++  I  +D K+L+   D L+ ++QSG+I+L 
Sbjct: 751 VSTLEDRLSADRAGNLMDQVQTIDNVKLLAVRIDNLDGKQLREQADKLRDQLQSGVIVLG 810

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++ + K ++L+ VT+DL +   A +L +  A+++ GG GGGRP +AQ+GG    + + A
Sbjct: 811 GVN-DGKVALLVSVTKDLTNTLKAGNLIKPLAEMV-GGRGGGRPDLAQAGGSQPEQLNNA 868

Query: 889 IAGVASFL 896
           +   A  +
Sbjct: 869 LEAAAGIV 876


>gi|238799432|ref|ZP_04642859.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238716719|gb|EEQ08608.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 875

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/911 (43%), Positives = 562/911 (61%), Gaps = 58/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A   VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLITAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL   + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKHQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD +         
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVHQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDTG
Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFAVADTQKYGQAIG-HLGKLTHGTLRVNHSIDAQVDVTRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLP+ T 
Sbjct: 570 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+S+     G  S+ LCGG H S TG+I L  I+S
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + +  Q + L+ +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALVHQQSDLLQDVAHLVKGDTNNLTEKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +LQ +  ++  Q +    S  K ++ V  +   +  V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKDQQAAQESASLSSSAKLVSGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG +     
Sbjct: 805 A-TTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 SALASVEAWVE 872


>gi|257465412|ref|ZP_05629783.1| alanyl-tRNA synthetase [Actinobacillus minor 202]
 gi|257451072|gb|EEV25115.1| alanyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 874

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/896 (43%), Positives = 544/896 (60%), Gaps = 60/896 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FFQ  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFQSKGHTVVESSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLPG+ EE G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ID+F+ LI+   ++  +K   N  +  RVI DH+RS S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTIAELLNVKDLDNKSL--RVIADHIRSCSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L   MG A   + Q +  I++T
Sbjct: 299 APSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+GDVAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGDVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F   ++ QR RA+A S  G+      K+        G T FIGYD L      
Sbjct: 418 V-IDEAGFEAEMQAQRERAKASSNFGVDYNNVIKV-------DGKTDFIGYDNLTA---- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V  +   G  V+   SG+   ++ D+TPFYAE GGQ+G
Sbjct: 466 -------------------EATVVGLFSNGNAVDVVKSGENAIIILDKTPFYAEMGGQVG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G    +  +  + D QK  + +F H   +E G L+    +   +  + R  + +NHSA
Sbjct: 507 DSGRISTEFCQFHVVDTQKYGQ-VFGHIGQIEAGELKVGDKVTAEVAAERRHSIQLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG+HV Q GS +  +GLRFD +  + IT  +L++IE  VN  I +N+ V
Sbjct: 566 THLLHSALREVLGTHVMQKGSLVNENGLRFDFSQPEAITKEQLEAIERIVNAKIRENIEV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           V   M  E+A A GA AL G KY D VRVV     D  V S  LCGGTHV  TG+I L  
Sbjct: 626 VIEEMGIEEAKAKGAMALFGEKYGDVVRVV-----DMSVFSIELCGGTHVKRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE ++ AG+RR+EAITG+ A + L    +  +  A  LK    N+V +++++ ++ ++
Sbjct: 681 ITSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKR 740

Query: 770 ----LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               LQ +  K+  Q    DL+    +I  VN +   +   + K L++++D L+ ++ S 
Sbjct: 741 LEKELQQLKEKQASQAGA-DLAKQAKQINGVNVVVTQLENTEPKVLRTMVDDLKNQLGSA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I++L G   + K ++++ V+ DL  +  A +L    A  + GG GGGRP MA +GG
Sbjct: 800 IVVL-GTVADDKVNLIVGVSSDLTTQIKAGELVGEMATYV-GGKGGGRPDMAMAGG 853


>gi|238784094|ref|ZP_04628108.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238714940|gb|EEQ06938.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 875

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/913 (43%), Positives = 568/913 (62%), Gaps = 64/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           +A VLQ   +NY+IDLF+ LI A   VTG   +   ++   RVI DH+RS +FLI+DG++
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLITAVADVTGATDFSSKSL---RVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELNKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD +        
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVHQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + G+ V+E  +G++  VV +QTPFY E+GGQ+GDT
Sbjct: 467 -----------------QATVTALFRNGQAVDEIHAGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFVVADTQKYGQAI-GHLGKLTHGTLRVNHSIDAQVDATRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLP+ T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+S+     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY---- 767
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +      
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKADTHNLADKVRAVLDRSKMLE 743

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGI 824
           R+LQ +  ++  Q +    S  K+  VN +  ++S++D+ E   L++++D L+ ++ S I
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAI 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+L   + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG +  
Sbjct: 802 IVLA-TTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQ 858

Query: 884 KADQAIAGVASFL 896
               A+A V +++
Sbjct: 859 ALPSALASVEAWV 871


>gi|227329399|ref|ZP_03833423.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 875

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/909 (44%), Positives = 554/909 (60%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYARAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC+
Sbjct: 124 PKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDIDLFK LI A  +  G     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL  
Sbjct: 362 TEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+  QR RAR  S   G G        + E    T F GY+        ++ 
Sbjct: 420 VDEEGFEAAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 AI   G  V++  +G +  V+ ++TPFY E+GGQ+GD G
Sbjct: 468 AKVI-----------------AIYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+   + D QK  + I  H   + RG LR   S+   +D Q R ++ +NHSATHL
Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTRGTLRVNDSVEANVDSQRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T 
Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+S
Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L  
Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
           +L   K +           K  +VN +  ++++   VD K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQFKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 805 -GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|307254463|ref|ZP_07536300.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258922|ref|ZP_07540653.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306862604|gb|EFM94561.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306866946|gb|EFM98803.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 874

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 545/905 (60%), Gaps = 58/905 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I     +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVI-----KVEGQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           +G  I  GI    + D QK  + +F H   +  G L     +  T+D   R  ++ NHSA
Sbjct: 508 SGL-ISTGICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V
Sbjct: 566 THLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
               M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  
Sbjct: 626 TIETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++
Sbjct: 681 LVSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKR 740

Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I
Sbjct: 741 TEKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAI 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG     
Sbjct: 801 VVF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQN 858

Query: 885 ADQAI 889
            D A+
Sbjct: 859 LDNAL 863


>gi|33152493|ref|NP_873846.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|38372509|sp|Q7VLK0|SYA_HAEDU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33148716|gb|AAP96235.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 874

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/905 (42%), Positives = 553/905 (61%), Gaps = 56/905 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSS+L+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFNSKGHTVVPSSALVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ AW+ LT E   
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFAWEFLTSEKWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 HLPKEKLYVTVYETDDEAYDIWHKTVGVPSEHIIRIGDNKGVPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPG++EE G+RYIE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGESFWGGLPGTAEEDGDRYIEVWNIVFMQFNRQADGTLAKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+  E  T +     +  + RVI DH+R+ S+LI DG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIK--EVATLLHVADLDNKSLRVIADHIRACSYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   MG A   L   +  I++T
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLAKVMGQAGEILTDKQSYIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + +++ L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKTEEEQFARTLERGLALLEEALTKV-ENQTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  SF   +  QR RA++ S   G+      + S+ +    T FIGYD         
Sbjct: 418 V-IDEASFEIEMTAQRERAKSSS-NFGAD-----YNSVIKVEAETAFIGYDCFNA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            + KV+                 A+   G+ V++  SG+   VV D+TPFYAE GGQ+GD
Sbjct: 466 -EAKVI-----------------ALFSNGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       +  + D QK  + +F H   V  G L     +   +D   R+ ++ NHSAT
Sbjct: 508 SGLITTAFCQFAVADTQKYGQ-VFGHIGQVVSGSLAIGDIISAQVDIARRQAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++ + LRFD + S+ ++ A+L+ IE  VN  I QNL V 
Sbjct: 567 HLLHSALRQVLGEHVVQKGSLVSENVLRFDFSQSQAVSKAQLEEIERIVNRQIRQNLAVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   G  AL G KY D VRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 IETMDIETAKEKGTVALFGEKYGDVVRVVGMTD-----FSIELCGGTHVKHTGEIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           +SES++ AGIRR+EA+T + A + L  Q + +   A  LK    ++V ++ ++ ++ ++ 
Sbjct: 682 ISESAVAAGIRRVEALTAENAINWLHNQQKIIHQSAELLKTDSLSLVDKIYQLQDKIKRN 741

Query: 770 -LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825
             +L H K KL          ++  +N ++ +I +   ++SK L++++D L+ ++ S I+
Sbjct: 742 EKELQHFKDKLAAQAGAELAKQVVQINGINVVIQKLEGIESKSLRTMVDDLKNQLSSVIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +S + K ++++ VT+DL ++ NA +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFGSVSAD-KVNLIVGVTKDLSNKVNAGELVGLIAQQV-GGKGGGRPDMAMAGGTEPQHL 859

Query: 886 DQAIA 890
           D A+A
Sbjct: 860 DTALA 864


>gi|134282822|ref|ZP_01769525.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134245908|gb|EBA45999.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 874

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDRG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K   
Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|260549963|ref|ZP_05824178.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260406955|gb|EEX00433.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 883

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/914 (44%), Positives = 538/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 9   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DRLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 189 FFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL  E
Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARRDVIEATLIRE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + S+ +  G TQF GY              
Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                  I+ T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 465 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+   ++   +    R   + NHSATHLLH
Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKANQNVEAIVKADIREATARNHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N PV T ++
Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTPVTTELL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 635 DIEAAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    LQ  
Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|190149963|ref|YP_001968488.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263291|ref|ZP_07544909.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|205829969|sp|B3H177|SYA_ACTP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189915094|gb|ACE61346.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871353|gb|EFN03079.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 874

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/904 (42%), Positives = 543/904 (60%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I     +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGADYNNVI-----KVEGQTDFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|53719621|ref|YP_108607.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76812235|ref|YP_333216.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121601160|ref|YP_992755.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124386422|ref|YP_001026453.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449388|ref|YP_001080272.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126451905|ref|YP_001065931.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|167001586|ref|ZP_02267381.1| alanine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167738941|ref|ZP_02411715.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816161|ref|ZP_02447841.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824533|ref|ZP_02456004.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167846068|ref|ZP_02471576.1| alanyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894639|ref|ZP_02482041.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167903047|ref|ZP_02490252.1| alanyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911280|ref|ZP_02498371.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919300|ref|ZP_02506391.1| alanyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423601|ref|ZP_03455102.1| alanine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226192959|ref|ZP_03788571.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242315165|ref|ZP_04814181.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254180068|ref|ZP_04886667.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188523|ref|ZP_04895034.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198350|ref|ZP_04904772.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254261778|ref|ZP_04952832.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297905|ref|ZP_04965358.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358720|ref|ZP_04974993.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|59798504|sp|Q63TF9|SYA_BURPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123599400|sp|Q3JT87|SYA_BURP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830001|sp|A3MJ36|SYA_BURM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830002|sp|A2S3D4|SYA_BURM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830003|sp|A1V3F2|SYA_BURMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830004|sp|A3NUB0|SYA_BURP0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52210035|emb|CAH36008.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76581688|gb|ABA51163.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229970|gb|ABM52488.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124294442|gb|ABN03711.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126225547|gb|ABN89087.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242258|gb|ABO05351.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|148027847|gb|EDK85868.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157807006|gb|EDO84176.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936202|gb|EDO91872.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|169655091|gb|EDS87784.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210608|gb|EDU07651.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393459|gb|EEC33480.1| alanine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225935049|gb|EEH31024.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242138404|gb|EES24806.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243062691|gb|EES44877.1| alanine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254220467|gb|EET09851.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 874

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K   
Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|330446966|ref|ZP_08310617.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491157|dbj|GAA05114.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 874

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/909 (42%), Positives = 547/909 (60%), Gaps = 57/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   T
Sbjct: 4   STDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLVVTVYETDDEAFDIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ + +V G     N  +  RV+ DH+RS ++LI+DG++P+
Sbjct: 244 AAIMQGVHSNYEIDIFQTLIKEAAKVIGFDDLSNQSL--RVVADHIRSCAYLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+ 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLKI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ FG+TLDRGL +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEDNFGRTLDRGLTILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F  A+EEQR RAR A + G+      K+          T+F GY            
Sbjct: 420 DEEGFEAAMEEQRQRARDAGNFGVDYNDAIKV-------DAETEFCGY------------ 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                       T+G   IV A+ + G  V+   +G+   VV   TPFYAE+GGQ GD+G
Sbjct: 461 ----------SATDGEGEIV-ALYRDGVAVDSVNAGEDALVVLTNTPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G+   + D QK    I  H   V  G L     L  ++D   R  +S+NHSATHL
Sbjct: 510 ILTAEGVLFNVADTQKFGAAIG-HKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ILG HV+Q GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T 
Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVEIMVNDQIRDNHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+S
Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES I AGIRRIEA+TG  A   +  +D  L   A  +K    +VV +VE +    ++L  
Sbjct: 684 ESGIAAGIRRIEAVTGAAAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
           ++   K KL         ++  ++N +  +I+++   D+K L+ ++D L+ ++ SG+++L
Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +S + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861

Query: 888 AIAGVASFL 896
           A+  VA +L
Sbjct: 862 ALETVAPWL 870


>gi|330831302|ref|YP_004394254.1| alanyl-tRNA synthetase [Aeromonas veronii B565]
 gi|328806438|gb|AEB51637.1| Alanyl-tRNA synthetase [Aeromonas veronii B565]
          Length = 874

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/911 (41%), Positives = 563/911 (61%), Gaps = 57/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+   L +
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF +W+K  G+ AD+I+RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 DRLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER++
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G     N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSL--RVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ + R LG T+     L   L  +M     ELI    L+E  LR E
Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVAAELIAQLPLVERVLRIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TLDRGL+LL+  L++LG  +++ G+V FKLYDT+G P D+  D++  R + GID
Sbjct: 362 EEQFVRTLDRGLLLLEDALANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GID 420

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F   +E+QR+RA+ A S G+      K+ F        T F GY             
Sbjct: 421 EEGFKAEMEKQRARAKEASSFGVNYNEMLKLDFE-------TPFTGY------------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K L ++        V  I K +    E V   ++G +  +V ++TPFYAE+GGQ+GD+G 
Sbjct: 461 KTLTERTR------VVGIYKGV----EEVSGLIAGDEAVIVLEETPFYAESGGQIGDSGT 510

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + DGI   +TD  K  + I +H   +E G L     +   +D   R+ +++NHS THL
Sbjct: 511 LKVDDGI-FAVTDTLKAGKAI-IHKGYMELGTLEKGAEVEAVVDGDRRQAIALNHSVTHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN+ I  N  + T+
Sbjct: 569 LHAALRQALGEHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNNQIRANHEITTQ 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++
Sbjct: 629 LMDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q  +  +V ++ ++ + +  
Sbjct: 684 ESGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQMLDKAKMMER 743

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
           +L   K KL     +    ++ ++N    +++ +   D K L+ ++D L+ +++SG+++L
Sbjct: 744 ELEQLKAKLAAQAGNDLLGQVIEINGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        
Sbjct: 804 ATCA-DGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPA 861

Query: 888 AIAGVASFLKK 898
           A+  V S+L++
Sbjct: 862 ALQSVHSWLEE 872


>gi|149911059|ref|ZP_01899687.1| alanyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805885|gb|EDM65873.1| alanyl-tRNA synthetase [Moritella sp. PE36]
          Length = 873

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/917 (43%), Positives = 546/917 (59%), Gaps = 74/917 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL++F   GH    SSSL+P NDPTL+FTN+GM  FK++F G E+  Y   T
Sbjct: 4   STAEIRNAFLDYFASKGHNKGTSSSLVPANDPTLLFTNAGMNQFKDVFLGAEQRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    + +
Sbjct: 64  TSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAILFAWEFLTVVLKIPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSE 174
            +L +TVY+ D EAF  W    G+  DKIIRI          +DNFWSM +TGPCGPCSE
Sbjct: 124 EKLLVTVYESDNEAFSFWANKVGVPEDKIIRIGDKSPEKKFESDNFWSMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWNLVFMQF +Q       LPK S+DTGMGLER+
Sbjct: 184 IFYDHGEDIWGGVPGSPEEDGDRFIEIWNLVFMQFNRQADGTMEELPKPSVDTGMGLERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           A ++Q   +NY+ID+F+ LI+   ++ G    E  ++   RVI DH+R+ SFLI+DG++P
Sbjct: 244 AAIMQNVHSNYEIDIFQSLIKHVAELIGTTDLEHKSL---RVIADHIRACSFLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG   P    L+  +   MG    +L++ + ++E+ L 
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGPFFNKLVAKMVELMGDISDDLVKQQAIVEKILL 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+FGKTL+RGL +LD  LS L   +++ GDV FKLYDT+G P D+  DI   R L  
Sbjct: 361 IEEEQFGKTLERGLNILDNELSQL-DGKVVPGDVVFKLYDTYGFPSDLTADIARERELT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E QR+RAR  S   G+   E +    K     T+F+GY  L        D
Sbjct: 419 IDEDGFKTAMEAQRNRARQGS-NFGTDYNEMLKIDAK-----TEFLGYQTL------TSD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +++                 A+++    VE    GQ+  +V ++TPFYAEAGGQ GD G
Sbjct: 467 AQIV-----------------ALIKDNAEVELLNDGQEGAIVLNKTPFYAEAGGQSGDQG 509

Query: 533 C-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
              IGD +   +TD  KKA    +H   V  G++     ++  +D   R+ + +NHS TH
Sbjct: 510 VIKIGDAV-FTVTDT-KKAGNATIHFGSVS-GVIEVNSQVIADVDVSRRKAIGLNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L H AL  ++G +V Q GS + P+ LRFD +H + +T A+L  +E  VN  I  N  VVT
Sbjct: 567 LAHAALRKVVGDNVQQKGSLVLPERLRFDFSHFEGVTPAQLIEVERLVNAQIRANHEVVT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ + A  +GA AL G KY+D VRVV +     G  S  LCGGTHV  TG+I    I+
Sbjct: 627 EVMDIDAAREAGAMALFGEKYDDEVRVVRM-----GDFSIELCGGTHVKRTGDIGFFKIL 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG+RR+EA+TG  A +++     K++  AS +K  Q  VV +V ++ +  R L+
Sbjct: 682 SESGIAAGVRRVEAVTGDSALAYVHDLVAKMQETASLVKADQNTVVAKVSQVLDRNRSLE 741

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHI------------ISEVDSKELKSVMDALQKK 819
               K   +LNV+  S    A+ N +  +            +   D K L+S MD L+ K
Sbjct: 742 ----KEVEKLNVQVASA---ANANLIDQVQVINGVKVLVANLKGADPKSLRSSMDELKNK 794

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +QSGII+L GI  E K +++  VT+DL+ +  A +L    A V  GG GGGRP MAQ+GG
Sbjct: 795 LQSGIIVL-GIPGEGKVNLITGVTKDLIGKVKAGELVSFLA-VQVGGKGGGRPDMAQAGG 852

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+  V  +L
Sbjct: 853 SNPEALAAALESVTPWL 869


>gi|167719939|ref|ZP_02403175.1| alanyl-tRNA synthetase [Burkholderia pseudomallei DM98]
          Length = 874

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYGIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K   
Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|261854984|ref|YP_003262267.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261835453|gb|ACX95220.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 872

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/909 (43%), Positives = 550/909 (60%), Gaps = 52/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +RT FLEFF + GHE++PSSSLIP +DPTL+FTN+GMV FK+ F G E      
Sbjct: 2   MKTTAELRTAFLEFFNQRGHEIVPSSSLIPAHDPTLLFTNAGMVQFKDAFLGLEHRANPR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+  WD LT+   L
Sbjct: 62  AVSCQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPEAIRYGWDFLTQVLKL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-----NDNFWSMAETGPCGPCSEI 175
              RL +TVY  D+EA+ +W+   GL  +K++RI       +DNFW M +TGPCGPC+EI
Sbjct: 122 PADRLLVTVYQTDDEAYAIWRDEIGLPEEKVLRIGDKPSGGSDNFWQMGDTGPCGPCTEI 181

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  IPGG PGS+ E+G+R+IEIWN+VFMQ+++    +   LPK S+DTGMG+ER+A
Sbjct: 182 FYDHGAHIPGGPPGSADEDGDRFIEIWNIVFMQYDRTVDGQLHPLPKPSVDTGMGIERLA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NYDID+F+HLI A++ VTG   + ++ +  +V+ DH+RS +FLI DG+ P N
Sbjct: 242 AILQGGHSNYDIDIFRHLITAAQAVTGAADQKSSSL--KVLADHIRSCAFLIVDGVRPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGR YVLRRI+RRA  +   LG  EP    L+  L   MG AY EL  A+  +   LR E
Sbjct: 300 EGRDYVLRRIIRRAARHGHKLGVDEPFFYRLVAPLVEVMGPAYSELANAQAEVARVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +L+  L+ +     + G+V FKLYDTHG P D+  DI   RGL  +D
Sbjct: 360 EERFLQTLASGMQVLETELADMTPGGTIPGEVVFKLYDTHGFPFDLTADIARERGLV-LD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ E+R+++RA                      A+QF      + +  ++ +  
Sbjct: 419 ESGFEHAMAERRAQSRA----------------------ASQFA-----QQTHVLEIETP 451

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
              +    D   G    + AIV  GE ++   +GQ   +V D TPFYAE+GGQ+GDTG  
Sbjct: 452 TCFEGYAQDKAQGA---LIAIVHDGEQIDVLEAGQSGALVLDHTPFYAESGGQVGDTGVI 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  +TD QK+    F+H   V  G +         ID + R  + +NHSATHLLH
Sbjct: 509 TTAGGRFVVTDTQKQGAN-FLHLGEVIEGRVALGDVADAQIDVERRHSIRLNHSATHLLH 567

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  + LRFD + S+PIT A+L+ IE  VN  I +N  V TR M
Sbjct: 568 AALRQVLGTHVHQKGSRVGAESLRFDFSQSEPITDAQLREIERIVNAQIRENHSVETREM 627

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A A+GA AL G KY D VRVV++     G  S  LCGGTH    G+I L+ IVSES
Sbjct: 628 PVDEARAAGAMALFGEKYGDVVRVVTM-----GPFSMELCGGTHARRGGDIGLIKIVSES 682

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TG  A + L   D+ L  +AS ++ S+ + V RV ++ E  R+L+   
Sbjct: 683 GVASGVRRIEAVTGASALAVLEQTDDALAEIASMVRGSRQDAVSRVSQVIERARQLEREL 742

Query: 775 AKRKLQLNVE---DLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +   E   DL    +A  DVN++   + + D   L+  +D L+ K+ +  +ML  
Sbjct: 743 AEIKAKQAAEAGGDLLTTAVAMGDVNYLVAELPDADVNTLRDTVDQLKNKLGTSAVMLAS 802

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + ++ K  ++  V++DL  R  A D   ++A+++ GG GGGRP MAQ+GGP+  +   A+
Sbjct: 803 V-EDGKVRLIAGVSKDLTGRIKAGDWVNVAAQIV-GGKGGGRPDMAQAGGPDSAQLPAAM 860

Query: 890 AGVASFLKK 898
               +++KK
Sbjct: 861 EAARAWMKK 869


>gi|126441822|ref|YP_001058678.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|205830005|sp|A3N8K7|SYA_BURP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126221315|gb|ABN84821.1| alanine--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 874

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K +L  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K   
Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|258623803|ref|ZP_05718760.1| alanyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258583926|gb|EEW08718.1| alanyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 858

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/907 (43%), Positives = 545/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 2   STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L +
Sbjct: 62  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 122 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 181

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 182 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 241

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+    G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 242 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   L         L+  L   MG+A  EL + + L+E+ LR 
Sbjct: 300 NEGRGYVLRRIIRRAVRHGNKLSAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G   D+  D+   RG + I
Sbjct: 360 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFLADLTNDVARERGFS-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+EEQR RAR       +G     + +L +    T+F GY   RG        
Sbjct: 418 DETGFEQAMEEQRQRARE------AGQFGTDYNALIKSATNTEFCGYTASRG-------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG 
Sbjct: 464 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATHLL
Sbjct: 509 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+ E+K +E  VN  I +N  + T I
Sbjct: 568 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETNI 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 628 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A  ++  Q    D K+  +A+  K+ +       +EI +   K
Sbjct: 683 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 735

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    AK    L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  
Sbjct: 736 LA---AKESAGLINQ---VKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIMLGN 789

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+
Sbjct: 790 IA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 847

Query: 890 AGVASFL 896
             V +++
Sbjct: 848 ESVDAWI 854


>gi|238786914|ref|ZP_04630715.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238725282|gb|EEQ16921.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 875

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/911 (43%), Positives = 558/911 (61%), Gaps = 58/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGAAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF++LI A   VTG     +  +  RVI DH+R+ +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRNLISAVADVTGATDLSSKSL--RVIADHIRACAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L  L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDEELDKLTGD-TLDGETAFRLYDTYGFPIDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+     I         A+QF GYD +         
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRVD-----SASQFSGYDHVHQ------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GD G
Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFAVADTQKYGQAIG-HLGQLTHGTLRVNHSVDAQVDVVRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDIVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  E A   GA AL G KY+D+VRV+++     G  S+ LCGG H + TG+I L  I+S
Sbjct: 630 VMELEAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768
           ES   AGIRRIEA+TG+ A + L  Q + L  +A  +K    N+  +V  + +      R
Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLADVAHLVKGDTNNLADKVRAVLDRSKMLER 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +LQ +  ++  Q +    S  K+   V  +   +  V+ K L++++D L+ ++ S II+L
Sbjct: 745 ELQQLKDQQAAQESASLSSNAKLVKGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              + + K S+++ VT+DL  +  A +L A ++ +V  GG GGGRP MAQ+GG +     
Sbjct: 805 -ATTADDKVSLIVGVTKDLTSKVKAGELIADIAQQV--GGKGGGRPDMAQAGGSDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 SALASVEAWVE 872


>gi|330966776|gb|EGH67036.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 874

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/892 (44%), Positives = 537/892 (60%), Gaps = 59/892 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+LP++
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL TEMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSATHLL
Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVVT  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGG 853


>gi|268593120|ref|ZP_06127341.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311391|gb|EFE51844.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 875

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/914 (42%), Positives = 560/914 (61%), Gaps = 64/914 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT E  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEEWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY  D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEIGIPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+ID+F+ LI A+ + TG     N  +  RVI DH+RS +FL++DG++P
Sbjct: 244 ISAVLQHVNSNYEIDIFRDLIAAAAKATGATDLENKSL--RVIADHIRSCAFLVSDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIKVMGPAADELARQQAMVEKVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L K + L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLQLLDEELASL-KGDTLDGEAAFRLYDTYGFPIDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E+QR RAR  S G G+     I    + ++   Q+               
Sbjct: 420 VDEEGFERAMEDQRRRARESS-GFGADYNSLIKVDKRSEFSGYQY--------------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +   + + A+ + G+ V+   +G++  V+ D+T FYAE+GGQ+GDTG
Sbjct: 464 -------------DEQQATITALYKDGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDTG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D    ++TD QK  + I  H   VE G L     +   +D   R  + +NHSATHL
Sbjct: 511 YLNNDNASFKVTDTQKYGQAIG-HIGKVEAGSLVVNHRITAVVDSARRDAIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I +N  + T 
Sbjct: 570 LHAALRQVLGDHVSQKGSLVNDKYLRFDFSHFEAMTQEQLRQVEDIVNAQIRKNSEIETE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH   TG+I L  I+S
Sbjct: 630 LMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHARRTGDIGLFRILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA TG  A   +  Q E+L ++A  +K    ++V +V+   ++ R+L+ 
Sbjct: 685 ESGTAAGVRRIEATTGSMAIESIHNQSEQLSAIAHLVKGDINSLVEKVKAALDKSRQLE- 743

Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
              K  +QL  +  S        K  DV  +  +++++   D K L++++D L+ +++S 
Sbjct: 744 ---KEIVQLKDQQASQESASLSSKAKDVKGIKLLVTQLADTDPKLLRTMVDDLKNQLKSA 800

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   S + K S+++ VT DL  +  A DL    A  + GG GGGRP MAQ+GG + +
Sbjct: 801 IIVLSTTSGD-KVSMIVGVTNDLTAKVKAGDLISYIASQV-GGKGGGRPDMAQAGGTDVS 858

Query: 884 KADQAIAGVASFLK 897
               A+A V  +++
Sbjct: 859 ALPAAMASVEEWVE 872


>gi|237811944|ref|YP_002896395.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|237502943|gb|ACQ95261.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346]
          Length = 874

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDRG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K +L  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K   
Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|254230499|ref|ZP_04923872.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262393294|ref|YP_003285148.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151936971|gb|EDN55856.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262336888|gb|ACY50683.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 860

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/908 (42%), Positives = 553/908 (60%), Gaps = 65/908 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGVLAEVMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMVILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGQFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 IRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T +
Sbjct: 570 HAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AGIRRIEA+TG+ A   +  Q+ K +      K+++     + + + +E +KL   
Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-----KLAES--AQKAKALEKEVQKL--- 734

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+          K  +VN    +++ +   DSK L++++D ++ ++ SG+++L  +
Sbjct: 735 --KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANV 792

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG + +   +AI 
Sbjct: 793 TGD-KVGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPEAIK 850

Query: 891 GVASFLKK 898
            V  +L++
Sbjct: 851 TVQPWLEE 858


>gi|149190613|ref|ZP_01868882.1| alanyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835611|gb|EDL52579.1| alanyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 861

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/910 (43%), Positives = 542/910 (59%), Gaps = 68/910 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHDDPTLLFTNAGMNQFKDCFLGLEKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF++W K  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFEIWNKQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHVDGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G +   N  +  RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEVIGYQDLSNQSL--RVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L + MGSA  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGTLASVMGSAGEELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L   L +LG +++L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMTILTEALDNLGDEKVLDGETVFKLYDTYGFPADLTNDVAREREFT-I 420

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+E QR RAR A   G       K+          T+F GY    GS      
Sbjct: 421 DEEGFEKAMEAQRQRAREAGQFGTDYNAAIKVDTD-------TEFCGYTGTEGS------ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  V+   +G K  VV +QTPFYAE+GGQ GD G
Sbjct: 468 -----------------SSVAAMFVEGAEVDALSAGDKAIVVLEQTPFYAESGGQCGDAG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK    I  HH  +  G+L     +   +D Q R  +S+NHSATHL
Sbjct: 511 VLKTAAGLFKVEDTQKLGNAI-AHHGELVEGVLAKGDEVDAIVDAQRRAAISLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 570 LHAALRQVLGEHVTQKGSLVKPDNLRFDFSHLEAMTKAEIKEVERLVNAQIRTNHVIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 630 VMDIESAKAKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           E  I AGIRRIEA+TG+ A   +  Q    +EKL   AS  K  +       +EI +   
Sbjct: 685 EGGIAAGIRRIEAVTGEAALDAIEAQASQYEEKLTDAASKAKSLE-------KEIQQLKD 737

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           KL  + +   +          +IA    +   +   DSK L+++MD  + ++ SGI  + 
Sbjct: 738 KLAAVESANIMG------KVEEIAGTQVLVAALEGADSKNLRTMMDNAKNQMGSGIAFIA 791

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K  ++  VT+DL  +  A DL ++ A+ +GG GGG RP MAQ+GG +     +A
Sbjct: 792 NVA-DGKIGLIAGVTKDLTGKVKAGDLVKMVAEQVGGKGGG-RPDMAQAGGSDVEALPEA 849

Query: 889 IAGVASFLKK 898
           +  + S+L++
Sbjct: 850 LKSIRSWLEE 859


>gi|325983477|ref|YP_004295879.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532996|gb|ADZ27717.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 865

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/909 (42%), Positives = 555/909 (61%), Gaps = 66/909 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FLEFF+  GH ++ SS L+P NDPTL+FTN+GMV FK+IF GQ+K  Y    + 
Sbjct: 4   SEIRQKFLEFFESQGHTVVSSSPLVPGNDPTLLFTNAGMVQFKDIFLGQDKRPYVRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWD LT   ++   +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILFAWDFLTHTLNIPHEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TVY ED+EA  +W    G+   +I+RI T DNFW M +TGPCGPCSEIF+D G  + 
Sbjct: 124 LWVTVYAEDDEAAGIWLNEVGVEPSRIVRIATMDNFWQMGDTGPCGPCSEIFYDHGADVQ 183

Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS++ +G+RYIEIWNLVFMQ+ + +      LPK S+DTGMGLER++ V+Q   +N
Sbjct: 184 GGPPGSADADGDRYIEIWNLVFMQYNRDSAGVLHPLPKPSVDTGMGLERISAVMQHVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF+ LI+A+ +VT      +N +  +VI DH+R+ SFLIADG++P +EGRGYVLRR
Sbjct: 244 YDIDLFQSLIKAAARVTNTSNLNDNSL--KVIADHIRACSFLIADGVIPGSEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  +P    L+  L   MG AYPEL  AK  +   L  E+ERF +TL+
Sbjct: 302 IIRRAIRHGYKLGQKQPFFHQLVEDLDQVMGQAYPELTAAKARVAAVLLQEEERFAETLE 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +L+  LS     +IL+G+ AF+LYDT G P+D+  DI   RG+  +D   F QA+ 
Sbjct: 362 NGMQILETALSQ--NIQILDGETAFRLYDTFGFPIDLTADIARERGIT-VDYAGFEQAMA 418

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKE--KYGATQ--FIGYDLLRGSKFMKEDRKVLCQK 479
            QR +ARA S            F+L+E  +Y  +Q  F GY+ L      + + ++L   
Sbjct: 419 RQREQARAASK-----------FTLQEGIEYSGSQTTFYGYETL------QHEGQIL--- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                         A+ +QG  V+   +G +  VV DQTPFYAE+GGQ+GD G  +    
Sbjct: 459 --------------ALYKQGSAVDSIEAGDEAVVVLDQTPFYAESGGQVGDCGELLAANG 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QK   G+F H   +  G L  + ++   ++ QNR  ++ NHSATHLLH AL  
Sbjct: 505 IFEVTDTQKIQAGVFGHKGKLHSGRLMIKDTVHAQVNAQNRISIANNHSATHLLHAALRE 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS +  +  RFD +H+ P+T+ ++++IE  VND I  N  V    M  +DA
Sbjct: 565 VLGTHVTQKGSLVDANRTRFDFSHNVPLTADDIRAIERLVNDQIRNNCIVEAATMKYDDA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I  GA AL G KY+D VRV+ +     G  S+ LCGGTHV   G+I L  IV+ES + AG
Sbjct: 625 IKRGAMALFGEKYSDVVRVIGM-----GEFSTELCGGTHVPQVGQIGLFKIVAESGVAAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRR+EA+TG+ A  ++  ++ +L  +A  LK +   V  ++ +I +  R  +   A+ K 
Sbjct: 680 IRRVEAVTGKAAIDYVQQREAQLLEIAQTLKANPQEVTQKIAQIIDNVRHTERELARLKT 739

Query: 780 QL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +L            +D++  K+  VN     +   D+K L+  +D L+ K+++  I+L  
Sbjct: 740 KLASSQGADLASQAQDVNGVKVLAVN-----LENADAKTLRETLDQLKDKLKTCTIVLST 794

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K +++  V+ DL DR  A +L    A+ + GG GGGR  MAQ+GG    +   A+
Sbjct: 795 VA-DGKVTLIAGVSADLTDRIKAGELVNFVAQQV-GGKGGGRADMAQAGGTQPEQLPGAL 852

Query: 890 AGVASFLKK 898
            GV  ++++
Sbjct: 853 GGVKDWVER 861


>gi|303257717|ref|ZP_07343729.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000999|ref|ZP_08324635.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859687|gb|EFL82766.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329569774|gb|EGG51538.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 875

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/895 (42%), Positives = 545/895 (60%), Gaps = 58/895 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR+TFL+F +  GH ++ SS ++P +DPTL+FTN+GM  FK+++ G +K  Y  
Sbjct: 1   MFTASEIRSTFLKFMESKGHTIVASSPVVPGDDPTLLFTNAGMNQFKDVYLGFDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKNAWELLTEHFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCS
Sbjct: 121 PPEKLWVTVYAEDDEAYNIWNKEVGIPADRIVRIGDNKGARFASDNFWMMGDTGPCGPCS 180

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+RY+EIWNLVFMQF +  K     LP+ S+DTGMGLER
Sbjct: 181 EIFYDHGPSVAGGPPGSPDEDGDRYMEIWNLVFMQFNRDEKGVMHKLPRPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQA---SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           ++ VLQ   +NY+IDLF++L++A     +  G +    N  + +VI DH+R+ +F+IADG
Sbjct: 241 ISAVLQGVHSNYEIDLFQNLMKAVIDEVKAAGAEDVDPNSPSVKVIADHIRACTFIIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGR YVLRRI RR M +   LG  +    +L+ A+  EMG  YPE+      I+E
Sbjct: 301 VVPGNEGRSYVLRRIARRGMRHGFKLGARKLFFSNLVKAVAKEMGDQYPEIRNPH--IQE 358

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            LR E+ RF +TL +GL +L+  L+   K  IL GDVAFKL+DT+G P+D+  D+ C   
Sbjct: 359 VLRQEEVRFSQTLSKGLDILNEALASGTK--ILGGDVAFKLHDTYGFPVDLTADV-CREK 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D   F+  +E+QR +ARA           K+   L+ +   T+F+GYD L      
Sbjct: 416 NVSVDFEGFDALMEKQREQARAKG-------KFKMAQGLEYEGKPTEFLGYDTLTVQA-- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                  C+             V+AI + GE V++A +G +V VVFD+TPFYAE+GGQ+G
Sbjct: 467 -------CR-------------VEAIYKDGEPVKDAEAGDEVVVVFDRTPFYAESGGQMG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G        L++ D  K    +F H   V  G ++        +D +NR   + NHS 
Sbjct: 507 DKGTFKNKTTILKVDDTFKIKANVFGHMCYVAEGEVKVGDLFSAQVDEENREATARNHSV 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  ++  +ED VN  I +N P 
Sbjct: 567 THLMHKALREVLGAHVQQRGSMVNGDRTRFDFVHTSPMTREQINEVEDIVNKEILRNAPT 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            TR+M  ++A  + A  L G KY + VRV+++        S  LCGGTHV  TG+I +  
Sbjct: 627 QTRVMPIDEAKKTNAVMLFGEKYGENVRVLNIG------SSCELCGGTHVQRTGDIGMFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+SES I AG+RR+EA+TG  A  +   Q+E ++ +A  LK     VV +V +  E  ++
Sbjct: 681 IISESGISAGVRRVEAVTGMAALHYAQNQEEIIREVAEELKAPALEVVSKVVDTVEHLKR 740

Query: 770 LQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGI 824
            +  L   K K           +  DVN ++ +++E   +++KEL++ +D L+ +++SG+
Sbjct: 741 TEKDLNALKVKFAQAGAAHMASQAQDVNGVAVLVTEMKGIETKELRNSVDGLKDQLKSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I+L+  S++ KAS  + VT+DL+ +  A D+ +  A+ L GG GGGRP  AQ GG
Sbjct: 801 IVLIK-SEDGKASAAVGVTKDLVGKIKAGDVMKFVAEQL-GGKGGGRPDFAQGGG 853


>gi|254507377|ref|ZP_05119512.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219549633|gb|EED26623.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 860

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/909 (42%), Positives = 550/909 (60%), Gaps = 67/909 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G +   N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKAAAEVVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+EEQR RAR A   G     T K           T+F GY   +G       
Sbjct: 420 DEAGFEKAMEEQRQRAREAGQFGTDYNATIKT-------EAETEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  I  +GE+ E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------KSNVAEIFVEGEVAESLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAIVDAERRASISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H + +T  ELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKPENLRFDFSHLEAVTPTELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  ++++ K     ++ +Q     + + + +E +KL  
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAI--EEQQAKYEEKLVESAQ-----KAKSLEKEIQKL-- 734

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
              K K+          K+ ++N    +I+ +   D+K L++++D ++ ++ SG+I+L  
Sbjct: 735 ---KDKMAAAESANIMGKVQEINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILLAN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +AI
Sbjct: 792 INGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPEAI 849

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 850 KTVQPWLEE 858


>gi|167836924|ref|ZP_02463807.1| alanyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 854

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/891 (43%), Positives = 540/891 (60%), Gaps = 55/891 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   TT
Sbjct: 3   AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L   
Sbjct: 63  AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTAVYKLPAD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS +E G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPQEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGPFFHRLVADLVAEMGAAYPELKEAEPRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALADLEAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA   G    T       L+     T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA--AGKFRATQ-----GLEYTGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G+L+    +   ID   R + + NHSATHL+
Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRGEIDAGRRARTARNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +ED VN+ +  N P + R+
Sbjct: 571 HKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEDIVNEQVLANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+E
Sbjct: 631 MPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L 
Sbjct: 745 LAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG
Sbjct: 805 AVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGG 853


>gi|152988514|ref|YP_001349956.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|205830183|sp|A6VA71|SYA_PSEA7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150963672|gb|ABR85697.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 874

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/912 (44%), Positives = 556/912 (60%), Gaps = 61/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419

Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RARA S  G+        + SL +  G T+F+GY  +          
Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +G   IV A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD+G 
Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+R  + D   KA G  +HH +V  G L    ++   +D   R+  ++NHSATHLL
Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVAEGGLSVGAAVKAEVDASVRQATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +LK++ED VN  I +N  V T  
Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEDIVNAEIRRNTEVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I SE
Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG  A ++L G +E+LK  A  +K S+ N++ ++  + E  R L  +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAAGLVKGSRDNLLDKLGALLERNRSLEKE 744

Query: 772 LIHAKRKLQLNV-EDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K K      +DLS     I     ++  +  +D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLKAKAASAAGDDLSAAAVDIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804

Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           G   E    V++V  VT+DL  +  A +L +  A    GG GGGRP MAQ GG +  K D
Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTDAAKLD 860

Query: 887 QAIAGVASFLKK 898
           +A+A    F+++
Sbjct: 861 EALALAQRFVEQ 872


>gi|307261112|ref|ZP_07542790.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869194|gb|EFN00993.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 874

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NE RGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNESRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I        G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|294860514|ref|ZP_06798283.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013150]
          Length = 883

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/914 (44%), Positives = 537/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 9   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 189 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL  E
Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + ++ +  G TQF GY              
Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 465 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATHLLH
Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I +N  V T ++
Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAKIIENTAVTTELL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 635 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    LQ  
Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 869 FGQVMAALPAWLEQ 882


>gi|307249853|ref|ZP_07531828.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858107|gb|EFM90188.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 874

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I        G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFTVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKVKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|227114946|ref|ZP_03828602.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 875

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/909 (44%), Positives = 558/909 (61%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC+
Sbjct: 124 PKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDIDLFK LI+A  +  G     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIEAVAKAVGTTDLTNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL  
Sbjct: 362 TEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+  QR RAR  S   G G        + E    T F GY+        ++ 
Sbjct: 420 VDEEGFEAAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 AI   G  V++  +G +  V+ ++TPFY E+GGQ+GD G
Sbjct: 468 AKVI-----------------AIYHNGTAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+   + D QK  + I  H   + +G LR   S+   +D Q R ++ +NHSATHL
Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T 
Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+S
Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S    K  +VN +  ++++   VD K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 805 -GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|285017964|ref|YP_003375675.1| alanyl-tRNA synthetase (alanine--tRNA ligase) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473182|emb|CBA15688.1| probable alanyl-trna synthetase (alanine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 883

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 554/910 (60%), Gaps = 51/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FLEFF+  GH ++PS+ LIP NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLEFFKGKGHAIVPSAPLIPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDEAYGLWRDMVGVPEERIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGAHIAGGPPGSPEEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++T      N  +  RVI DH+R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTATTDLENKSL--RVIADHIRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     L+P L   MG AYPEL+ A+ ++   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQGFFSKLVPTLVALMGEAYPELVAAQDIVLRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V +   +  ++ G+ AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAAK-AQGGVIAGEDAFRLYDTYGFPLDLTQDIARERALC-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+EEQR RAR  +   G G   ++   L      T F+GYD L+          
Sbjct: 424 EQGFETAMEEQRRRAR-EAGKFGGGV--QLPADLVATLAPTLFLGYDSLQADGLR----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V ++ D+TPFYAE+GGQ+GD G  
Sbjct: 476 -----------------VVALLKDGRPVQSAQAGDAVIILTDKTPFYAESGGQVGDIGIL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G R  +TD QK A     H   +  G L+    L   +D + RR   +NHSATHLLH
Sbjct: 519 LQGGTRCAVTDTQKFAGQFHGHVGTLIEGTLKIGDVLAGQVDAERRRATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI + EL  IE  VN  +  N  V    M
Sbjct: 579 AALREVLGTHVHQKGSLVAPDRLRFDFSHFQPIAAKELALIERKVNQQVRANHAVEVHQM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHV+ TG+I L  + SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGERVRVLKM-----GDYSTELCGGTHVTRTGDIGLFKVTSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++  L   A  +  S  ++V ++ ++ ++Y++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVSAEEAMLHEAAELVGGSANDMVDKIRQLGDKYKRLEREM 753

Query: 775 AKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L      DL  S   +  V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 EALKAKLASSATADLAGSAVDVGGVKVLAVRLEGFDAKALREAMDRLKQQLGESVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K +++  V    + R  A + L+ +++++   G GGGRP +AQ GG +G     A
Sbjct: 814 AS-EGKVALVSGVNGSPMGRVKAGELLSHIASQI--SGKGGGRPDLAQGGGEDGPALVHA 870

Query: 889 IAGVASFLKK 898
           +AGV  ++K+
Sbjct: 871 LAGVTEWVKQ 880


>gi|205830244|sp|A1RHG5|SYA_SHESW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830245|sp|A4Y931|SYA_SHEPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/909 (42%), Positives = 559/909 (61%), Gaps = 58/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI   W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +    E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYTELVG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQATG-HQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
           A+ K +L     S   + D   VN ++ +I ++D  E   L+ + D L++K++S II+L 
Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL- 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G ++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D 
Sbjct: 803 GTAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 861 ALAQVLPWI 869


>gi|165976064|ref|YP_001651657.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|205829970|sp|B0BNS8|SYA_ACTPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|165876165|gb|ABY69213.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 874

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I        G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFTVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|54310165|ref|YP_131185.1| alanyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|46914606|emb|CAG21383.1| putative alanyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 906

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/904 (43%), Positives = 543/904 (60%), Gaps = 56/904 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT Q+
Sbjct: 41  IRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRATTAQR 100

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L Q RL 
Sbjct: 101 CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLPQDRLL 160

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179
           +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSEIF+D 
Sbjct: 161 VTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSEIFYDH 220

Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           GE I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+A ++Q
Sbjct: 221 GEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIAAIMQ 280

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+NEGRG
Sbjct: 281 GVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPSNEGRG 338

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG +      L+  L   MG+A  EL + + L+E+ L+ E++ F
Sbjct: 339 YVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKIEEDNF 398

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           G+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    ID   F
Sbjct: 399 GRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-IDEEGF 456

Query: 419 NQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           N A+E QR RAR A   G+    + K+  +       T+F GY                 
Sbjct: 457 NNAMEAQRQRAREAGKFGVDYNESIKVDVN-------TEFCGY----------------- 492

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                  T   SSIV A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G    +
Sbjct: 493 -----TGTAAQSSIV-ALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGVLTAE 546

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++D QK    I  H   + +G L     L   +D   R  +++NHSATHLLH AL
Sbjct: 547 NTVFNVSDTQKFGAAI-GHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLLHSAL 605

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD LRFD ++ + +   +L+ IE  VN+ I  N  + T IM+ E
Sbjct: 606 RNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNIMDIE 665

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE  I 
Sbjct: 666 SAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSEGGIA 720

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775
           AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  +   
Sbjct: 721 AGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKDIQQL 780

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832
           + KL          +  ++N +  +I+++   D+K L+ ++D ++ K+ SGI++L  +S 
Sbjct: 781 QDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLGNVSG 840

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+  V
Sbjct: 841 D-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALESV 898

Query: 893 ASFL 896
             +L
Sbjct: 899 TPWL 902


>gi|169796616|ref|YP_001714409.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|205829964|sp|B0VAI3|SYA_ACIBY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830054|sp|A3M3W2|SYA_ACIBT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830056|sp|B2HWK7|SYA_ACIBC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169149543|emb|CAM87432.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|193076886|gb|ABO11606.2| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 878

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 64  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL  E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + ++ +  G TQF GY              
Sbjct: 420 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 460 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATHLLH
Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T ++
Sbjct: 570 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 630 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    LQ  
Sbjct: 690 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 747

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 748 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 805

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 864 FGQVMAALPAWLEQ 877


>gi|59798539|sp|Q6LMU3|SYA_PHOPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 873

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/904 (43%), Positives = 543/904 (60%), Gaps = 56/904 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT Q+
Sbjct: 8   IRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRATTAQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L Q RL 
Sbjct: 68  CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLPQDRLL 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179
           +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSEIF+D 
Sbjct: 128 VTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSEIFYDH 187

Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           GE I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+A ++Q
Sbjct: 188 GEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIAAIMQ 247

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+NEGRG
Sbjct: 248 GVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPSNEGRG 305

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG +      L+  L   MG+A  EL + + L+E+ L+ E++ F
Sbjct: 306 YVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKIEEDNF 365

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           G+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    ID   F
Sbjct: 366 GRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-IDEEGF 423

Query: 419 NQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           N A+E QR RAR A   G+    + K+  +       T+F GY                 
Sbjct: 424 NNAMEAQRQRAREAGKFGVDYNESIKVDVN-------TEFCGY----------------- 459

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                  T   SSIV A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G    +
Sbjct: 460 -----TGTAAQSSIV-ALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGVLTAE 513

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++D QK    I  H   + +G L     L   +D   R  +++NHSATHLLH AL
Sbjct: 514 NTVFNVSDTQKFGAAIG-HQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLLHSAL 572

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD LRFD ++ + +   +L+ IE  VN+ I  N  + T IM+ E
Sbjct: 573 RNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNIMDIE 632

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE  I 
Sbjct: 633 SAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSEGGIA 687

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775
           AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  +   
Sbjct: 688 AGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKDIQQL 747

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832
           + KL          +  ++N +  +I+++   D+K L+ ++D ++ K+ SGI++L  +S 
Sbjct: 748 QDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLGNVSG 807

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+  V
Sbjct: 808 D-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALESV 865

Query: 893 ASFL 896
             +L
Sbjct: 866 TPWL 869


>gi|307256675|ref|ZP_07538454.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864723|gb|EFM96627.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 874

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I        G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRKNIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|184157474|ref|YP_001845813.1| alanyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|213156272|ref|YP_002318692.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|215484078|ref|YP_002326303.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|294840176|ref|ZP_06784859.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013113]
 gi|294842075|ref|ZP_06786758.1| alanyl-tRNA synthetase [Acinetobacter sp. 6014059]
 gi|301346311|ref|ZP_07227052.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301510214|ref|ZP_07235451.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|301596473|ref|ZP_07241481.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|183209068|gb|ACC56466.1| Alanyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|213055432|gb|ACJ40334.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|213985935|gb|ACJ56234.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322507789|gb|ADX03243.1| alaS [Acinetobacter baumannii 1656-2]
 gi|323517389|gb|ADX91770.1| alanyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
          Length = 883

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 9   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 189 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL  E
Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + ++ +  G TQF GY              
Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 465 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATHLLH
Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T ++
Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 635 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    LQ  
Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 869 FGQVMAALPAWLEQ 882


>gi|27364961|ref|NP_760489.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|29611879|sp|Q8DC49|SYA_VIBVU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27361107|gb|AAO10016.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 860

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/907 (43%), Positives = 546/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W +  G+ AD+IIRI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ ++ G +   N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEAMGSAADELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+    KI    +     ++F GY             
Sbjct: 420 DEAGFEKAMEEQRQRAR-EAGQFGTDYNAKIKVDAQ-----SEFCGY------------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      +    S V A+  +GE      +G K  V+  +TPFYAE+GGQ GD+G 
Sbjct: 461 ----------TSTQERSDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    Q+ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T I
Sbjct: 570 HAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    +EKL+  A+  K  +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEAALEAIDAQARKFEEKLQDAANKAKSLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L       +   N+ D    +IA V  +   +   D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 L-----ASQASANLID-QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSAL 849

Query: 890 AGVASFL 896
           A V +++
Sbjct: 850 ASVDAWI 856


>gi|89075063|ref|ZP_01161504.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89049150|gb|EAR54715.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 874

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/905 (43%), Positives = 545/905 (60%), Gaps = 57/905 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT Q+
Sbjct: 8   IRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRATTAQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L   RL 
Sbjct: 68  CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIGYAWEFLTSVLKLPADRLV 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSEIFFD 178
           +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW M +TGPCGPC+EIF+D
Sbjct: 128 VTVYETDDEAFDIWNKEIGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCTEIFYD 187

Query: 179 QGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+A ++
Sbjct: 188 HGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQVDGTMEPLPKPSVDTGMGIERIAAIM 247

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NY+ID+F+ LI+ + +V G +   N  +  RV+ DH+RS ++LI+DG++P+NEGR
Sbjct: 248 QGVHSNYEIDIFQTLIKEAAKVIGFEDLSNQSL--RVVADHIRSCAYLISDGVMPSNEGR 305

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+ E++ 
Sbjct: 306 GYVLRRIIRRAVRHGNKLGAEGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLKIEEDN 365

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG+TLDRGL +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG   ID   
Sbjct: 366 FGRTLDRGLTILNEALDKL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFT-IDEDG 423

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F  A+EEQR RAR A + G+      K+          T F GY                
Sbjct: 424 FEAAMEEQRQRARDAGNFGVDYNNAIKV-------DAETVFCGY---------------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T+G S IV A+ + G  V+   +G++  VV   TPFYAE+GGQ GD+G    
Sbjct: 461 ------SATDGESEIV-ALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSGILTA 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + +   + D QK    I  H   V  G L     L  ++D   R  +S+NHSATHL+H A
Sbjct: 514 EAVLFNVDDTQKFGAAIG-HKGQVAEGSLTVGQKLTASVDSARRAAISLNHSATHLMHAA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L TILG HVSQ GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T IM+ 
Sbjct: 573 LRTILGEHVSQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHVIETNIMDI 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+SES I
Sbjct: 633 EAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILSESGI 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AGIRRIEA+TG  +   +  +D  L   A  +K    +VV +VE +    ++L  ++  
Sbjct: 688 AAGIRRIEAVTGAASIEEMHNEDVMLAKTARLVKSDSASVVSKVEALVSHSKQLEKEIQQ 747

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
            K KL         ++  ++N +  +I+++   D+K L+ ++D L+ ++ SG+++L  +S
Sbjct: 748 LKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLLGNVS 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      A+  
Sbjct: 808 -DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPAALET 865

Query: 892 VASFL 896
           VA +L
Sbjct: 866 VAPWL 870


>gi|269965244|ref|ZP_06179378.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269830230|gb|EEZ84457.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 860

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 550/908 (60%), Gaps = 65/908 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTATKG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 IRTESGVFHVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T +
Sbjct: 570 HAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AGIRRIEA+TG+ A   +  Q+ K +      K+++     + + + +E +KL   
Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-----KLAES--AQKAKALEKEVQKL--- 734

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+          K  +VN    +++ +   DSK L++++D ++ ++ SG+++L  +
Sbjct: 735 --KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANV 792

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +AI 
Sbjct: 793 TGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPEAIK 850

Query: 891 GVASFLKK 898
            V  +L++
Sbjct: 851 TVQPWLEE 858


>gi|261253947|ref|ZP_05946520.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937338|gb|EEX93327.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 860

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/909 (42%), Positives = 550/909 (60%), Gaps = 67/909 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W +  G+ AD+I+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G +   N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+EEQR RAR A   G     T K           T+F GY   +G       
Sbjct: 420 DEAGFEKAMEEQRQRAREAGQFGTDYNATIKT-------EAETEFCGYAGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S V  I  +GE  E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------NSNVAEIFVEGEAAESLSAGDKAIIILSETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAVVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD ++ + +T AELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKPENLRFDFSNLEAVTPAELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  ++++ K     ++ +Q     + + + +E +KL  
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAI--EEQQAKYEEKLVESAQ-----KAKSLEKEIQKL-- 734

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
              K K+          K+ D+N    +++ +   D+K L++++D ++ ++ SG+I+L  
Sbjct: 735 ---KDKMAAAESANIMGKVQDINGTKVLVAALEGADNKNLRTMVDDIKNQVGSGVILLAN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +      AI
Sbjct: 792 IN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPDAI 849

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 850 QSVQPWLEE 858


>gi|239503494|ref|ZP_04662804.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB900]
          Length = 878

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/914 (44%), Positives = 535/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 64  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL  E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + ++ +  G TQF GY              
Sbjct: 420 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 460 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATHLLH
Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T ++
Sbjct: 570 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 630 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV    E    LQ  
Sbjct: 690 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVHANVELVSALQ-- 747

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 748 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 805

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 864 FGQVMAALPAWLEQ 877


>gi|237745661|ref|ZP_04576141.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229377012|gb|EEO27103.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 870

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/908 (43%), Positives = 546/908 (60%), Gaps = 58/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH ++ SS L+P NDPTLM TN+GMV FK++F G +K  Y   T+V
Sbjct: 4   AEIREKFLSFFKAKGHTVVRSSPLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRATSV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWDLLT  + L   +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWDLLTTVYKLPPEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L+ TVY ED+EA+ +W    GL  ++I+RI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWATVYQEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS  E+G+RYIEIWNLVFMQF +  +     LP   +DTGMGLER+A V
Sbjct: 184 DHGPEIAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERLAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ + TG     NN +  +VI DH+R+S+F+I DG++P ++G
Sbjct: 244 LQHVHSNYEIDLFQNLIRAAARETGTADLTNNSL--KVIADHIRASTFMIVDGLIPGSDG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
            GYVLRRI+RRA+ +   LG T P    L+  L  EMG+AYPEL ++   ++  LR E+E
Sbjct: 302 HGYVLRRIIRRALRHGYKLGQTRPFFYKLVEDLVKEMGAAYPELAESAGYVQRILRHEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TLD G+ +L+  L+   K  +LNG+ AF LYDT+G PLD+  DI   RG+  +D  
Sbjct: 362 RFGETLDNGMKILESALADGTK--VLNGETAFTLYDTYGFPLDLTADICRERGIT-VDEQ 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+E+Q++ ARA      SG   K+   L+     T+F+GY+ L             
Sbjct: 419 GFDVAMEKQKATARA------SGKF-KMAAMLEYNGEKTRFVGYERLE------------ 459

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +  V A+ Q G  VE+ V GQ   VV D TPFYAE+GGQ+GD G  +G
Sbjct: 460 -----------ETGTVVALYQDGAPVEKIVEGQSGVVVLDVTPFYAESGGQVGDVGALLG 508

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             +R  + D QK    +  HH  V  G +     +   ++ + R Q   NHS THL+H A
Sbjct: 509 QHMRFDVEDTQKIQADVAGHHGKVVAGTIAVGDKVDARVNMELRAQTMRNHSVTHLMHKA 568

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS + PD  RFD +H+ P+T  E++ +E+ VN  I  N P   + M+ 
Sbjct: 569 LRQVLGQHVAQRGSLVDPDKTRFDFSHNAPVTDDEIRQVEEIVNREIVANNPTQAQQMSF 628

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DAIA GA AL G KY D VRV+ + +      S  LCGGTHVS TG+I    IVSE  +
Sbjct: 629 DDAIAHGATALFGEKYGDVVRVLDIGF------SCELCGGTHVSRTGDIGFFKIVSEGGV 682

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQL 772
            AGIRRIEA+TG  A   +     K+   A  LK     +V R+ ++ ++     R+L  
Sbjct: 683 AAGIRRIEAVTGLAAMYWVQEMARKVGEAAVALKTQPDELVNRIVQLQDQMKGLDRELST 742

Query: 773 IHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + A R       DL+     +  V  ++ +I   D   L++ MD L+ ++++  I+L  +
Sbjct: 743 LKA-RFASSQGNDLAAKAVDVKGVKVLASLIEGADVPGLRNAMDKLKDRLKTAAIVLASV 801

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            K+ K S++  +T D+  +  A +L    A+ + GG GGGRP MAQ+GG + +   +A+ 
Sbjct: 802 -KDGKVSLIAGITSDMTAKIRAGELVNHVARQV-GGKGGGRPDMAQAGGSDPSALPEALK 859

Query: 891 GVASFLKK 898
            V +++++
Sbjct: 860 SVKNWVEE 867


>gi|120598090|ref|YP_962664.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|146293839|ref|YP_001184263.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|120558183|gb|ABM24110.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|145565529|gb|ABP76464.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 892

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/909 (42%), Positives = 559/909 (61%), Gaps = 58/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 22  TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 81

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI   W  LT+   L +
Sbjct: 82  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 141

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 142 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +    E   LPK S+DTGMG+ER+A
Sbjct: 202 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 261

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N  +  RVI DH+RS +FL+ADG++P+N
Sbjct: 262 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 319

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 320 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 379

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 380 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 437

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A      +G     + +  +    T F GY  L G         
Sbjct: 438 EAGFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYTELVG--------- 482

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 483 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 528

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 529 VANGIEFTVNDTQKYGQATG-HQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 587

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 588 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 647

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 648 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 702

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 703 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 762

Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
           A+ K +L     S   + D   VN ++ +I ++D  E   L+ + D L++K++S II+L 
Sbjct: 763 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL- 820

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G ++E K +++  V+ DL+ +  A +L A ++A+V  GG GGGRP MAQ+GG      D 
Sbjct: 821 GTAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 878

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 879 ALAQVLPWI 887


>gi|169633133|ref|YP_001706869.1| alanyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|169151925|emb|CAP00779.1| alanyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 878

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 64  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL  E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RA        +G     + ++ +  G TQF GY              
Sbjct: 420 EAGFEVEMAAQRQRAH------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 460 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATHLLH
Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATAHNHSATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +T D LRFD  + +P++  +L+ +E  VN  I  N  V T ++
Sbjct: 570 AALRQILGSHVQQKGSLVTSDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 630 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    LQ  
Sbjct: 690 GGVAAGVRRIEAVTGTKALEVVQKADHDIQYINSLLKAQKDQTVERVQANVELVSALQ-- 747

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 748 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 805

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 864 FGQVMAALPAWLEQ 877


>gi|53725058|ref|YP_102626.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|67639261|ref|ZP_00438139.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|254177470|ref|ZP_04884125.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254199562|ref|ZP_04905928.1| alanyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254205880|ref|ZP_04912232.1| alanyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|59798500|sp|Q62KZ3|SYA_BURMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52428481|gb|AAU49074.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|147749158|gb|EDK56232.1| alanyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753323|gb|EDK60388.1| alanyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|160698509|gb|EDP88479.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|238519796|gb|EEP83263.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4]
          Length = 874

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGR  MAQ+GG    K   
Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRSDMAQAGGTEPAKLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|187924800|ref|YP_001896442.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|205830007|sp|B2SZN0|SYA_BURPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187715994|gb|ACD17218.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 874

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/910 (41%), Positives = 541/910 (59%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L +
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+ GPCGPCSEI
Sbjct: 122 DKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADVGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFSRDAQGNMTPLPKQCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQALIKAAGRETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        ++  L  +MG AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGDAYPELKEAEQRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+ C      
Sbjct: 360 EERFFETIEHGMSILESALADLEAKGGKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F++A+  QR +ARA           K+   L+     T F GY+     + + +D
Sbjct: 419 VDEAAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V+E   G++  VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVI-----------------ALYVDGASVKEVRDGRQAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                 +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + R
Sbjct: 570 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV 
Sbjct: 630 VMPFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D       ++  V+ ++  +   D K L+  +D L+ K++S  I+L
Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV  +++
Sbjct: 862 ALAGVKGWVE 871


>gi|262273675|ref|ZP_06051488.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262222090|gb|EEY73402.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 860

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/909 (42%), Positives = 546/909 (60%), Gaps = 67/909 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FLEFF+  GH ++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEIRRAFLEFFESKGHAIVSSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF LW +  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLMVTVYETDDEAFALWNEKIGIPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+R+IEIWN VFMQ+ +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQYNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+++ +V G  Y+  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 244 AAIMQGVHSNYEIDVFQTLIKSAAEVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T      L+  L   MGSA  EL + + ++E+ L+ 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLVGPLAEVMGSAGEELKKQQAVVEKVLKI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + I
Sbjct: 362 EEENFGRTLDRGMAILNDALEAL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F  A+E QR RAR A   G       K+        G + F GY    G       
Sbjct: 420 DEEGFEAAMEAQRQRAREAGQFGTDYNAVIKV-------DGESAFTGYGATEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                             ++  I   G   E   +  +  ++ DQTPFYAE+GGQ GDTG
Sbjct: 466 ----------------EGLITNIFVDGMASEALATADEAVIILDQTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +  + ++ D QK    I  H   +  G L    ++   +D + R+ +++NHSATHL
Sbjct: 510 FLVTEAGKFEVIDTQKYGAAI-GHRGKLVDGTLSVGDTVDAKVDAERRQAIALNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +  +GLRFD +H + +   EL+++E  VN+ I +N  V T 
Sbjct: 569 LHEALRVVLGEHVQQKGSLVRAEGLRFDFSHLEAVKPEELRAVEKLVNEHIRRNHEVSTE 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN E A A GA AL G KY+D VRV+++     G  S  LCGGTH + TG+I +L IVS
Sbjct: 629 IMNIEAAKAKGAMALFGEKYDDNVRVLTM-----GDFSIELCGGTHANRTGDIGMLKIVS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AG+RRIEA+TGQ A      Q ++        KVS+     R+ E     +++QL
Sbjct: 684 EGGIAAGVRRIEAVTGQGAEEAFYSQQQEFAK-----KVSESQNRARLLE-----KEIQL 733

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
           +  K KL         + + ++N +  +IS++   DSK L++++D L+ ++ SG++ L  
Sbjct: 734 L--KEKLAAQESANLINNVEEINGIKVLISKLDGADSKALRTMVDDLKNQMGSGVVFLAN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+
Sbjct: 792 VA-DDKVGLIAGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDVAALPAAL 849

Query: 890 AGVASFLKK 898
           A V+ +L +
Sbjct: 850 ASVSPWLAE 858


>gi|50122289|ref|YP_051456.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|59798525|sp|Q6D1T0|SYA_ERWCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49612815|emb|CAG76265.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 875

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 557/909 (61%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC+
Sbjct: 124 PKEKLWVTVYATDDEAYGIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDIDLFK LI A  +  G     N  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNKSL--RVIADHIRSCAFLISDGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAEELKKQQSVVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL  
Sbjct: 362 MEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+  QR RAR  S   G G        + E    T F GY+        ++ 
Sbjct: 420 VDEEGFEAAMTAQRQRARDAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V++  +G +  V+ ++TPFY E+GGQ+GD G
Sbjct: 468 AKVI-----------------ALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+   + D QK  + I  H   + +G+LR   S+   +D Q R ++ +NHSATHL
Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGMLRVNDSVDANVDSQRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T 
Sbjct: 570 LHAALRQVLGVHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA A GA AL G KY+D VRV+S+     G  S  LCGGTH S TG+I L  I+S
Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLSM-----GDFSIELCGGTHASRTGDIGLFQIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRSRALEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S    K  ++N +  ++++   VD K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKAQQAAQESSSLSGKATEINGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 805 -GTAAEGRVSLISGVTKDLTDRVKAGELVGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|330889188|gb|EGH21849.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020]
          Length = 874

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/911 (43%), Positives = 544/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL + +A  +  G GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAV-SGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|91227829|ref|ZP_01262002.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91188339|gb|EAS74635.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 860

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/908 (42%), Positives = 551/908 (60%), Gaps = 65/908 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 IRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T +
Sbjct: 570 HAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AGIRRIEA+TG+ A   +  Q+ K +      K+++     + + + +E +KL   
Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-----KLAES--AQKAKALEKEVQKL--- 734

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+          K  +VN    +++ +   DSK L++++D ++ ++ SG+++L  +
Sbjct: 735 --KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANV 792

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +AI 
Sbjct: 793 TGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPEAIK 850

Query: 891 GVASFLKK 898
            V  +L++
Sbjct: 851 TVQPWLEE 858


>gi|37680987|ref|NP_935596.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|41018162|sp|Q7MHR6|SYA_VIBVY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|37199737|dbj|BAC95567.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 860

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/907 (43%), Positives = 546/907 (60%), Gaps = 67/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W +  G+ AD+IIRI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ ++ G +   N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+    KI    +     ++F GY             
Sbjct: 420 DEAGFEKAMEEQRQRAR-EAGQFGTDYNAKIKVDAQ-----SEFCGY------------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      +    S V A+  +GE      +G K  V+  +TPFYAE+GGQ GD+G 
Sbjct: 461 ----------TSTQERSDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    Q+ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T I
Sbjct: 570 HAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    +EKL+  A+  K  +       +EI +   K
Sbjct: 685 GGIAAGIRRIEAVTGEAALEAIDAQARKFEEKLQDAANKAKSLE-------KEIQQLKDK 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L       +   N+ D    +IA V  +   +   D+K L+ ++D L+ ++ SGIIML  
Sbjct: 738 L-----ASQASANLID-QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+
Sbjct: 792 VA-DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSAL 849

Query: 890 AGVASFL 896
           A V +++
Sbjct: 850 ASVDAWI 856


>gi|260557541|ref|ZP_05829756.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260409167|gb|EEX02470.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 883

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 9   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 189 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL  E
Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG   ID
Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + ++ +  G TQF GY              
Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 465 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATHLLH
Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T ++
Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 635 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    LQ  
Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S++  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLIASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 869 FGQVMAALPAWLEQ 882


>gi|152977739|ref|YP_001343368.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|205829971|sp|A6VKD6|SYA_ACTSZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150839462|gb|ABR73433.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 874

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/916 (42%), Positives = 555/916 (60%), Gaps = 64/916 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  K  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKYDAINFAWEFLTSPKWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 ALPKEKLYVTVYETDDEAYDIWNKEVGVPQEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GGLPG+ EE G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  VLQ   +NY+ID+F+ LI+   ++ G    GN  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERMTAVLQHVNSNYEIDIFQTLIKKVAEIVGTTDLGNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLIEVMAEAGKQVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL+LLD  L+++ K+ +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLILLDAELANV-KNGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F++ +E QR RA+ A + G+        + S+    G T+F GY         
Sbjct: 418 A-VDENGFDKEMEAQRLRAQSASNFGMD-------YTSIIRVDGETKFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVK--AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                          TN V S+ K  A+ + G+ VE   +GQ   V+ + TPFYAE GGQ
Sbjct: 461 ---------------TN-VESLAKVTALFRDGKAVESVSAGQSAVVILENTPFYAEMGGQ 504

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G    +G+   + D QK  + +F H   + +G L     +   +D Q R+   +NH
Sbjct: 505 IGDSGMLTANGLHFDVKDTQKYGQ-VFGHIGELTQGTLSVGQIVNAQVDAQRRQYTKLNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV+Q GS ++  GLRFD    + +T  ++  IE  VN  I  N 
Sbjct: 564 SATHLLHAALRQVLGEHVAQKGSLVSDVGLRFDFVQPEAVTKEQIMEIERLVNFHIRANH 623

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV+T  M   +A + GA AL G KY + VRVV++        S  LCGG HV  TGEI L
Sbjct: 624 PVLTEEMGVAEAKSKGAIALFGEKYGETVRVVTMS-----PFSIELCGGLHVERTGEIGL 678

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           L I+SE ++ AGIRR+EA+TG+ A + L  Q   L   A  LK    ++  ++ ++ ++ 
Sbjct: 679 LKIISEGAVAAGIRRVEAVTGEEAINWLFNQQTILAQSADLLKSDIPSLPEKIIQLQDKV 738

Query: 768 RK----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +K    LQ +  K  +Q    DL  S  KI  V+ ++H +   D+K L+ ++D L+ ++ 
Sbjct: 739 KKTEKELQQLKEKAAMQAG-SDLAKSAVKINGVSVVTHQLDGADAKVLRVMVDDLKNQLG 797

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +I L G +   K +++  VT DL  +  A +L  + A+ + GG GGGRP MA +GG  
Sbjct: 798 SAVIAL-GSASGGKVNLIAGVTADLTAKVKAGELVNVMAQQV-GGKGGGRPDMAMAGGSQ 855

Query: 882 GNKADQAIAGVASFLK 897
                 A+   + +LK
Sbjct: 856 PENLSAALIVASDWLK 871


>gi|269960382|ref|ZP_06174755.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834809|gb|EEZ88895.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 860

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/912 (42%), Positives = 548/912 (60%), Gaps = 73/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTVTLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W +  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          SS V A+  +G  VE   +G K  +V  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 IRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T +
Sbjct: 570 HAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    +EKL   A            + + + +E +K
Sbjct: 685 GGIAAGIRRIEAVTGEGALDAIEAQAAKYEEKLAESAQ-----------KAKSLEKEIQK 733

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
           L     K K+          K+ D+N    +I+ +   D+K L++++D ++ ++ SG+I+
Sbjct: 734 L-----KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVIL 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     
Sbjct: 789 LANVN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALP 846

Query: 887 QAIAGVASFLKK 898
            AI  V  +L++
Sbjct: 847 AAIQSVQPWLEE 858


>gi|325496257|gb|EGC94116.1| alanyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 839

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/860 (45%), Positives = 538/860 (62%), Gaps = 56/860 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 NKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I  
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803
             LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE 
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPN 881
            + GG GGGRP MAQ+GG +
Sbjct: 801 QV-GGKGGGRPDMAQAGGTD 819


>gi|253689580|ref|YP_003018770.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756158|gb|ACT14234.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 875

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/909 (43%), Positives = 551/909 (60%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC+
Sbjct: 124 PKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDIDLFK LI+A     G     N  +  RVI DH+RS +FLIADG+ P
Sbjct: 244 ISAVLQHVNSNYDIDLFKTLIEAVANAVGTTDLTNKSL--RVIADHIRSCAFLIADGVTP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAAELKKQQSVVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL  
Sbjct: 362 MEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+  QR RAR  S   G G        + E    T F GY+        ++ 
Sbjct: 420 VDEEGFEAAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V++  +G +  V+ ++TPFY E+GGQ+GD G
Sbjct: 468 AKVI-----------------ALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+   + D QK  + I  H   + +G LR   S+   +D Q R ++ +NHSATHL
Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T 
Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+S
Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S       +++ V  +   +  VD K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKAQQAAQESSSLSGKAKEVSGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 805 -GTVAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|328954420|ref|YP_004371754.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454744|gb|AEB10573.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 878

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/897 (42%), Positives = 547/897 (60%), Gaps = 47/897 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL +F+   H  + SSSL+P +DPTL+FTN+GMV FK +F G+E+  Y    + QK
Sbjct: 6   IREKFLAYFESKRHVRVASSSLVPAHDPTLLFTNAGMVQFKRLFLGEEQRGYSRAASAQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK  AI++AW+LLT+ + L   RL+
Sbjct: 66  CVRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKAGAIEMAWELLTEHYKLPTERLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183
            TVY +D+EA  LW  +  L  ++I+R+   DNFW+M +TGPCGPCSEI  DQGE   C 
Sbjct: 126 ATVYHDDDEAADLWHDVIHLPRERIVRLGEKDNFWAMGDTGPCGPCSEIIIDQGEERACG 185

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P    G   + +RY+EIWNLVFMQF +  +     LPK SIDTGMGLER+  V+Q    N
Sbjct: 186 PDCGIGRC-DCDRYLEIWNLVFMQFNRDEQGNLTPLPKPSIDTGMGLERLTAVIQGVPTN 244

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +D DL + +I  +E++ G+ Y  +    V  +VI DH R+ +FLI DG+LP+NEGRGYVL
Sbjct: 245 FDTDLIRPVIARTEELAGIAYGQDPALDVAFKVIADHCRAITFLITDGVLPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ + RLLG+ +P +  +   +   MG  YPEL+ A+  I++ + +E+ERF +T
Sbjct: 305 RRILRRAVRFGRLLGFKQPFLAPVGQKVIELMGGDYPELLDARSFIDQVVHNEEERFAET 364

Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LD GL +L   L  L    +  L GD+AFKLYDT+G PLD++ D+L  + L  +D+  FN
Sbjct: 365 LDHGLKILTDNLEDLKARGERRLPGDIAFKLYDTYGFPLDLITDVLQEQQLE-LDLSGFN 423

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  QR  +R    G   G    ++  L++   AT F+GYD     +F  E        
Sbjct: 424 EHMSRQRESSRQSWKGGLPGELPPVYQVLQD-LEATVFVGYD-----QFEAE-------- 469

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S + AI+Q+G  V  A +G+ VE+V + TPFYAE+GGQ+ DTG   G   
Sbjct: 470 ----------SQILAIIQEGATVSGAKAGRSVEIVVETTPFYAESGGQVADTGTIRGPDF 519

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + ITDVQ+    + +H   +++G +R    +VL ID   RRQ++ +H+ATHLLH AL  
Sbjct: 520 LITITDVQRLPNDVVIHKGEIKQGEIRVGKKVVLAIDAGRRRQIACHHTATHLLHAALRH 579

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS + PD  RFD +H   ++ A L  +E ++   I QNLPV    M   +A
Sbjct: 580 RLGDHVKQAGSLVAPDRFRFDYSHFTGLSDAVLAQLEVDLLHDIQQNLPVNVSYMPMSEA 639

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +GA AL   KY + VR+V+V     GV S  LCGG HV  TG+I    I+SESS+ AG
Sbjct: 640 LETGAMALFDEKYGNIVRLVAVP----GV-SLELCGGAHVDQTGDIGFCKIISESSVAAG 694

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G  A  +L  + ++L ++   LK  +G ++ R++++ +  R+L+      + 
Sbjct: 695 IRRIEAVCGAAALRYLQEESQELSAVGQRLKAGKGEILARLDKLLQRQRELEKEVEALQG 754

Query: 780 QLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           QL      DL      +  V  ++  +   D K L+   D L+ ++QSG+I+L G  +  
Sbjct: 755 QLAAARSGDLLERVRHVDGVKVLALEVDVADPKGLRDFADKLKDRLQSGVIIL-GSGRGD 813

Query: 835 KASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           KA ++ VVT+DL DR +A  +   L+A++  GG GGGRP MAQ+GGP   K  + ++
Sbjct: 814 KAMLITVVTKDLTDRLHAGKIVGELAARL--GGKGGGRPDMAQAGGPAKEKLPEVLS 868


>gi|113461263|ref|YP_719332.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123132149|sp|Q0I426|SYA_HAES1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112823306|gb|ABI25395.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 874

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/914 (42%), Positives = 549/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y  
Sbjct: 1   MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT     
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE + GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NYDID+F+ LI    ++TG K   N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKDLTNKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M +A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L ++ KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDEALINV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F + +E QR RA+A S  G+      ++        G T F GY         
Sbjct: 418 R-IDEEGFEREMEVQRLRAQAASRFGVDYNNVIRV-------EGTTTFEGYTEAE----- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+  +G+ VE   +GQ   V+ D TPFYAE+GGQ+G
Sbjct: 465 ------------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D GC I   +R  + D QK  + +F H   + +G L    ++   +D ++R + S+NHSA
Sbjct: 507 DRGCLIATNMRFDVKDTQKYGQ-VFGHIGTLIQGTLNVGQTINAVVDTEHRTKTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG+HV+Q GS ++   LRFD    + I   +L  IE  VN  I  N  V
Sbjct: 566 THLLHAALRQVLGTHVAQKGSLVSDTILRFDFAQPEAIRQEQLFEIECLVNQHIRANHLV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           VT +M  ++A A GA AL G KY D VRVV +     G  S  LCGG HV  TGEI L  
Sbjct: 626 VTEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IVSES+I AG+RR+EA+TG+ A + L  Q + L   A  LK    ++V +++++ ++ +K
Sbjct: 681 IVSESAIAAGVRRVEAVTGEAAINWLQQQQQILMQSADLLKSDANSLVEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  ++   +   S  +I  V+ +   +  +D K L+ ++D L+ ++ S +
Sbjct: 741 TEKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I  V    E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFV-TKTEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             +A+     +L K
Sbjct: 859 ISKALTVCNEWLHK 872


>gi|167563044|ref|ZP_02355960.1| alanyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 874

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/910 (42%), Positives = 538/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   TT
Sbjct: 3   AAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L   
Sbjct: 63  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPAD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY +D+EA+ +W K  G+ A +IIRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARETGIGDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A   + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L  L     + L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L      T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLDYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL+
Sbjct: 511 LANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R+
Sbjct: 571 HKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I    IV+E
Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  H+   D ++ + A+ LK     ++ R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRHVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKLLEKE 744

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D   L   ++  V+ ++  +   D+K L+  +D L+ K+++  I+L 
Sbjct: 745 LAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AVDG-GKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|90412109|ref|ZP_01220116.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90327087|gb|EAS43466.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 873

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/908 (42%), Positives = 539/908 (59%), Gaps = 56/908 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L Q
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLPQ 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 DRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      L   L   MG+A  EL + + L+E+ L+ E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGAFFYKLAGPLAEIMGTAGEELKKQQALVEKVLKIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ++ FG+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    ID
Sbjct: 362 EDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              FN A+E QR RAR A   G+    + K+  +       T+F GY             
Sbjct: 420 EEGFNNAMEAQRQRAREAGKFGVDYNESIKVDVN-------TEFCGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G 
Sbjct: 460 ----------TGTAAQSRIIALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     +TD QK    I  H   + +G L     L   +D   R  +++NHSATHLL
Sbjct: 510 LTAESTMFNVTDTQKFGAAIG-HQGSLVQGALNIGDKLEAQVDVARRAAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD ++ + +   +L+ IE  VN+ I  N  + T I
Sbjct: 569 HSALRNLLGEHVAQKGSLVKADALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE
Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
             I AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
           +   + KL          +  ++N +  +I+++   D+K L+ ++D ++ K+ SGI++L 
Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861

Query: 889 IAGVASFL 896
           +  V  +L
Sbjct: 862 LESVTPWL 869


>gi|330432525|gb|AEC17584.1| alanyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 874

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/898 (43%), Positives = 551/898 (61%), Gaps = 64/898 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSYLDFFHSKGHQIVASSSLVPENDPTLLFTNAGMNQFKDVFLGIDKRSYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHFAWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ DEEA+ +W +  G+ AD+I+RI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDEEAYNIWHQQIGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQ+ +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQYNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N  +  RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKVLIAKVAEITGEKDLANKSL--RVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M  A   L + ++ IE+ 
Sbjct: 299 YPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPTLIEVMAQAGEILKEKQVHIEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ L K  +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDAELASL-KGNVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A ID   FN+ +E QR RA+A S  G+        + +L    G T F GY         
Sbjct: 418 A-IDEDGFNREMEAQRERAQAASQFGMD-------YNNLIRVDGTTAFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVK--AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                           +   S+ K  AI   G+ V +  +GQ   ++ + TPFYAE+GGQ
Sbjct: 461 ----------------HAAESLAKVSAIFVDGKEVNQVQAGQSAVIILENTPFYAESGGQ 504

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G          + D QK  + +F H   +++G ++   +L   +D + R+  S+NH
Sbjct: 505 VGDSGILESADALFTVNDTQKYGQ-VFGHIGELKKGEIKVGQTLHAVVDAERRQATSLNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG+HV+Q GS ++   LRFD +  + I+ A++  IE  VN  I  N 
Sbjct: 564 SATHLLHAALRQVLGTHVAQKGSLVSDKLLRFDFSQPEAISKAQIAEIERIVNSQIRANH 623

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V    M+ E A A GA AL G KY DRVRV+++     G  S  LCGG HV  TG+I L
Sbjct: 624 VVSVEEMDIEAAKAKGAMALFGEKYGDRVRVITM-----GDFSIELCGGIHVKRTGDIGL 678

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES+I AG RRIEA+TG+ A + ++ Q   L   A  LK    ++V +++++ +  
Sbjct: 679 FKIVSESAIAAGTRRIEAVTGEEAFNVVLAQQSLLTQSAELLKSDLPSIVEKIQQLQDRA 738

Query: 768 RK----LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +K    LQ +  K  +Q  V DL+     I  V  +   ++ VD K L+ ++D L+ ++ 
Sbjct: 739 KKLEKELQQLKEKSAVQA-VSDLAQKAQTINGVKVVIESVTGVDPKSLRIMVDDLKNQLG 797

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + +I+  G ++++K ++++ VT+DL  +  A +L    A+++ GG GGGRP MA +GG
Sbjct: 798 TAVIVF-GATQDEKVNLIVGVTQDLTGKVKAGELVNQLAQLV-GGKGGGRPDMAMAGG 853


>gi|320180884|gb|EFW55807.1| Alanyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320189025|gb|EFW63684.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
          Length = 839

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/860 (45%), Positives = 538/860 (62%), Gaps = 56/860 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 NKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I  
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803
             LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE 
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPN 881
            + GG GGGRP MAQ+GG +
Sbjct: 801 QV-GGKGGGRPDMAQAGGTD 819


>gi|301026644|ref|ZP_07190061.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|299879631|gb|EFI87842.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1]
          Length = 839

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/860 (45%), Positives = 537/860 (62%), Gaps = 56/860 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 NKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I  
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803
             LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE 
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPN 881
            + GG GGGRP MAQ+GG +
Sbjct: 801 QV-GGKGGGRPDMAQAGGTD 819


>gi|90020946|ref|YP_526773.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123396361|sp|Q21L68|SYA_SACD2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89950546|gb|ABD80561.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 875

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/908 (44%), Positives = 562/908 (61%), Gaps = 55/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F+  GH  + SSSL+P NDPTL+FTN+GMV FK++F GQ+   Y   T+ 
Sbjct: 4   AEIREAFLQYFESKGHSRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDNRSYSRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEF-DLDQ 122
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT KE+  +  
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAINYAWEFLTSKEWLAIPT 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY +D+EA+ +W    G+  D+IIRI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLCVTVYADDDEAYGIWANDVGVPEDRIIRIGDNKGGRYNSDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG+ EE G+R+IEIWN+VFMQF +    E   LPK S+DTGMGLER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNVVFMQFNRSVDGEMAPLPKPSVDTGMGLERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            V+Q   +NY+IDLF+ L++A+ Q T  + E  +  + RVI DH+RS +FL++DG+LP+N
Sbjct: 244 AVMQHVHSNYEIDLFQALLEAAAQAT--QAEDKDAKSLRVIADHIRSCAFLVSDGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+P    L+ AL  +MG AYPEL++ +  IE+ L +E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGQTKPFFHTLVAALVEQMGEAYPELVRDQASIEKVLAAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +++F KTL++G+V+L+  LS L K  I+ G+V F LYDT+G P+D+  DI   R L  +D
Sbjct: 362 EDQFAKTLEKGMVVLESALSEL-KGTIIPGEVIFTLYDTYGFPVDLTNDIARERELT-LD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  ++  +E+Q+ RAR       SG+ +  + +     G T F+GY  L G         
Sbjct: 420 MDGYDALMEQQKKRARE------SGSFKVDYSATATIEGHTNFVGYSELTG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI+  GE V+    GQ   +V D TPFY E+GGQ GDTG  
Sbjct: 465 --------------DASVTAILVDGENVDTLTEGQSGVIVLDTTPFYGESGGQAGDTGYI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + DG + ++ D QK      +H   +  G ++        +D   R+  ++NHSATHLLH
Sbjct: 511 VFDGAKFEVQDCQKSGAN-HLHVGQLLAGAVKVGDKAQPVVDSAVRQATALNHSATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +  + LRFD +H + +   ELK IE  VN+ I  N PV T + 
Sbjct: 570 AALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVKPEELKQIESMVNEQIRLNSPVETELC 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A   GA AL G KY D VRV+S+    GG  S  LCGGTHVS TG+I L+ I SES
Sbjct: 630 DMEAAQQKGAMALFGEKYGDEVRVLSM----GGAFSVELCGGTHVSRTGDIGLIRITSES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
            I +G+RRIEA+TG++A S +    + L + A  LK S  N++ +VE++  + R+L+  L
Sbjct: 686 GIASGVRRIEAVTGEKALSVIDASADTLNAAAKLLKASPENLLDKVEQLIAQNRQLEKSL 745

Query: 773 IHAKRKLQLNVED--LS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             AK KL  +  D  LS    IA V  ++  +  VD+K L+ +MD L+ K+ +  ++L  
Sbjct: 746 AAAKSKLASSSADEWLSEATDIAGVKVLAKAVEGVDAKSLRDMMDKLKNKLGTSAVILAS 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K S++  V++D   +  A D+ +  A ++ GG GGGRP MAQ GG +      AI
Sbjct: 806 VN-DDKISLVAGVSQDATSKIKAGDMVKHVAGLI-GGKGGGRPDMAQGGGTDVEALPAAI 863

Query: 890 AGVASFLK 897
             V  + K
Sbjct: 864 GSVLDWAK 871


>gi|323496144|ref|ZP_08101204.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323318888|gb|EGA71839.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 860

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/909 (42%), Positives = 545/909 (59%), Gaps = 67/909 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ ++ G +   N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGHEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAGEELKKQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR        GT        +E+   T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAREAGQ---FGTDYNATIKTEEQ---TEFCGYTGTQG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V  I  +GE      +G K  ++  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------KSNVAEIFVEGEAAGSLSAGDKAIIILGETPFYAESGGQCGDAGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 LKTESGVFKVEDTQKLGNAI-AHHGVLAEGVLAKGDDVEAVVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + P+ LRFD +H + +T AELK +E  VN  +  N  + T +
Sbjct: 570 HAALRKVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRHNHVIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    +EKL   AS           + + + +E +K
Sbjct: 685 GGIAAGIRRIEAVTGEAALDAIEAQQAKYEEKLAESAS-----------KAKSLEKEIQK 733

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L+   A  +   N+      +I  V  +   +   DSK L++++D ++ ++ SG++ML  
Sbjct: 734 LKDKMAAAE-SANIMG-KAQEINGVKVLVAGMEGADSKNLRTMVDDIKNQMGSGVVMLAN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +    AI
Sbjct: 792 VN-DGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPAAI 849

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 850 QSVQPWLEE 858


>gi|326342881|gb|EGD66649.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 840

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/861 (44%), Positives = 539/861 (62%), Gaps = 56/861 (6%)

Query: 36  LMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95
           ++FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGN
Sbjct: 1   MLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN 60

Query: 96  FSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIR 153
           FSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  ++IIR
Sbjct: 61  FSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIR 120

Query: 154 ITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVF 205
           I  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VF
Sbjct: 121 IGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVF 180

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
           MQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG    
Sbjct: 181 MQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL 240

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
            N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L
Sbjct: 241 SNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL 298

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           +  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+
Sbjct: 299 VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGE 357

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I 
Sbjct: 358 TAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIR 415

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
                   A++F GYD L                        ++  V A+   G+ V+  
Sbjct: 416 VD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAI 447

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L
Sbjct: 448 NAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSL 506

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++
Sbjct: 507 KVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNE 566

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+    
Sbjct: 567 AMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM---- 622

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +
Sbjct: 623 -GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEV 681

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE 803
           A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE
Sbjct: 682 AHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSE 741

Query: 804 ---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A
Sbjct: 742 LSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVA 800

Query: 861 KVLGGGGGGGRPHMAQSGGPN 881
           + + GG GGGRP MAQ+GG +
Sbjct: 801 QQV-GGKGGGRPDMAQAGGTD 820


>gi|320354759|ref|YP_004196098.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320123261|gb|ADW18807.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 882

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/910 (42%), Positives = 546/910 (60%), Gaps = 53/910 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEFF+  GH  + +SSL+P +DPTL+FTNSGMV FK +F G+E   Y   TT 
Sbjct: 4   NEIRACFLEFFESKGHTRVAASSLVPHDDPTLLFTNSGMVQFKKVFMGEETRPYVRATTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q  VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD  +
Sbjct: 64  QSSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWEFLTKKLGLDPNK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++VY++D+EA++LW++I  L   +I+R+   DNFW+M +TGPCGPCSEI  DQG  + 
Sbjct: 124 LWVSVYNDDDEAYRLWERIEDLPKGRIVRMGEKDNFWAMGDTGPCGPCSEIHIDQGAEVG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   + +R++E+WNLVFMQF +        LPK SIDTGMGLER+A VLQ K N
Sbjct: 184 CGRPDCALGCDCDRFLELWNLVFMQFYRDEHGTMTPLPKPSIDTGMGLERVAAVLQGKFN 243

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DLF  +I     + G KY  N    V+ RVI DH R+++FL+ADG+LP+NEGRGYV
Sbjct: 244 NFDCDLFTPIIDHVAALAGKKYHENRADDVSMRVIADHARATTFLVADGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALC---TE-MGSAYPELIQAKLLIEETLRSEDE 356
           LRRIMRRA+ Y R LG +        P +C   TE M  AYP L   + L+ + + +E++
Sbjct: 304 LRRIMRRAIRYGRALGLSS-----FFPGVCALVTELMVHAYPHLGDTRELLAKVVTNEEQ 358

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           RFG+TLD GL  L+  +  L K E    +++GD  FKLYDT+G P+DI++DI   +G+A 
Sbjct: 359 RFGETLDHGLNKLEQEIRRLKKAEGERAVIHGDFIFKLYDTYGFPVDIVRDIAIEKGIA- 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            D   F QA+E+QR ++R    G      E     L  +    +FIGY            
Sbjct: 418 FDEPGFAQAMEQQREQSRKSWKGSDVDHLEAGIIELGSRGLKAEFIGY------------ 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                       T+GVS++   +   G++V EA +G+ + +   QTPFYAE+GGQ+GD G
Sbjct: 466 ----------ATTHGVSTVEGIVNASGQLVHEAKAGETLRLFCAQTPFYAESGGQIGDQG 515

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +  R  ++      EG+ +H   + +G L T   + L +    R   ++NH+ATHL
Sbjct: 516 EITWEDGRFVVSKTLAPVEGLILHEGQIAQGTLTTGTRVELQV-ADRRTDTALNHTATHL 574

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  A+  +LG HV Q GS +  + LRFD TH  P+T  E+ +IE  VN  I +N PV T 
Sbjct: 575 LQAAMKKVLGDHVKQAGSAVDHNRLRFDFTHFSPLTHGEICTIEQLVNAQIRRNTPVDTT 634

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++ RE AIA GA AL G KY + VRVV +     G  S  LCGGTH   TG+I L  IV 
Sbjct: 635 LLGREQAIAEGATALFGEKYGEEVRVVRI-----GDFSKELCGGTHARMTGDIGLFKIVM 689

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG+RRIEA+TG  A   +     +  ++++ L       V +++ + + +++L+ 
Sbjct: 690 ETGIAAGVRRIEAVTGAGAIHWVQELARQANAISAVLSGPLDGAVDKIQGLLKRHKELEK 749

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
             A     + + DL        +++ M  + S V     K L+ + D ++ ++QSGII+L
Sbjct: 750 QIAALNASMALSDLDQLLASSIELDGMRVVASRVPLDSPKTLREIGDKIRDRMQSGIIVL 809

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E KA++L +V++DL  R  A DL   +A V+ GG GGGRP MAQ+GGP  +K D+
Sbjct: 810 GG-EFEGKAALLAMVSKDLTGRIKAGDLVNRAA-VIVGGKGGGRPDMAQAGGPMPDKLDE 867

Query: 888 AIAGVASFLK 897
           AI  VAS +K
Sbjct: 868 AINSVASIIK 877


>gi|30249882|ref|NP_841952.1| alanyl-tRNA synthetase domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|41018196|sp|Q82TF8|SYA_NITEU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30180919|emb|CAD85841.1| Alanyl-tRNA synthetase:DHHA1 domain [Nitrosomonas europaea ATCC
           19718]
          Length = 863

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/900 (42%), Positives = 556/900 (61%), Gaps = 48/900 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FLEFF+  GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y    + 
Sbjct: 4   SEIRQKFLEFFEARGHVIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI  AW+ LT    + + +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRKAILFAWEFLTGSLGIPREK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ TVY ED+EA  +W    G+   +++RI T+DNFW M +TGPCGPCSEIF+D G  + 
Sbjct: 124 LWATVYAEDDEAADIWLNEVGIDPSRLVRIATSDNFWQMGDTGPCGPCSEIFYDHGPAVA 183

Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS + EG+RYIEIWNLVFMQ+ +    E   LPK S+DTGMGLER+A V+Q+  +N
Sbjct: 184 GGPPGSENAEGDRYIEIWNLVFMQYNRDASGELHPLPKPSVDTGMGLERIAAVMQQVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF+ LI+A+ +VTG K   NN +  +VI DH+R+ +FLI DG++P NEGRGYVLRR
Sbjct: 244 YEIDLFRSLIEAAARVTGSKDLSNNSL--KVIADHIRACAFLITDGVIPGNEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  +P    L+  L   MG AYPEL +A+  +   +R E+ERF +TL+
Sbjct: 302 ILRRAIRHGYRLGQKQPFFYLLVDDLVDVMGPAYPELTRARKHVAGVIRQEEERFAETLE 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +L+  LSH   +E L+G++ F+LYDT G P+D+  DI   RG+  ID+  F   + 
Sbjct: 362 NGMEVLEAALSH--GNETLSGEIVFRLYDTFGFPVDLTADIARERGIV-IDMAGFETCMA 418

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +QR RARA     G  T +     L+     T+F GY  L      + + ++L       
Sbjct: 419 QQRDRARAS----GKFTMQT---GLEYTGQPTEFHGYATL------QHEAQIL------- 458

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                     A+ +QG  V+   +  +  VV DQTPFYAE+GGQ GD+G  +       +
Sbjct: 459 ----------ALYKQGSRVDFIEADDEAVVVLDQTPFYAESGGQAGDSGELLSGSGTFTV 508

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK   G+F H+ ++  G +     ++  +D   R   + NHSATHLLH AL  +LG+
Sbjct: 509 NDTQKIQAGVFGHNGMLSSGRMAIGDRVIARVDQIARTNTAYNHSATHLLHAALRQVLGN 568

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +    LRFD +H+  +   E++ +E+ VN  I +N  V T++M  +DA+  G
Sbjct: 569 HVTQKGSLVDASRLRFDFSHNSAMQENEIRQVENLVNAQIRKNHEVATQLMTYDDAVKQG 628

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVV++     G  S+ LCGGTHVS +G+I    IV+ES + AGIRRI
Sbjct: 629 AMALFGEKYGDTVRVVAM-----GDFSTELCGGTHVSYSGDIGFFRIVAESGVAAGIRRI 683

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-N 782
           EA+TG  A ++   Q+++L+ +A  LK +      ++ +I +  R+++   A  + +L  
Sbjct: 684 EALTGDAALAYTQQQEQQLQQVADALKAAPQEAAQKLSQILDNIRQMEKEIATLRSKLAG 743

Query: 783 VEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           V+  S      +I  +  ++  +  V+ K L+  +D  + +++S +++L  I K+ K ++
Sbjct: 744 VQSTSLIEQAQEIKGIRVLATTLENVNVKTLRETLDNFKNRLKSCVVVLGTIEKD-KVTL 802

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT+DL  +  A DL    A+ + GG GGGR  MAQ+GG    K  QA+A V S++++
Sbjct: 803 IAGVTDDLTVKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPEKLPQALASVPSWVEQ 861


>gi|53729167|ref|ZP_00134001.2| COG0013: Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208134|ref|YP_001053359.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|205829968|sp|A3N018|SYA_ACTP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126096926|gb|ABN73754.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 874

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/904 (42%), Positives = 540/904 (59%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S   G+     I        G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQT FYAE GGQ+GD
Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTSFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              LQ +  K   Q   E +   +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAI 889
           D A+
Sbjct: 860 DNAL 863


>gi|209519489|ref|ZP_03268284.1| alanyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209500090|gb|EEA00151.1| alanyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 874

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/910 (42%), Positives = 547/910 (60%), Gaps = 55/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L +
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 DKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LIQA+ + TG+   GNN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQALIQAAGRETGVTDLGNNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL QA+  + + L  E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGEAYPELAQAEQRVTDVLYQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIENGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F++A+  QR +ARA           K+   L+     T F GY+     + + +D
Sbjct: 419 VDEPAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V++  +GQ+  VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVDGASVQQVQAGQQAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL
Sbjct: 510 VLANASTRFAVVDTLKVQADVVGHHGTLEQGTLKVGDIVKAEIDAMRRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + R
Sbjct: 570 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV+ +G+I    IV 
Sbjct: 630 VMSYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVNRSGDIGFFKIVM 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   + ++ + A+ LK     +  R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELEGRVNAAAAVLKAQPAELTQRIGQVQDQVKALEK 743

Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K+  +  D       +I  V+ ++  +   D K L+  +D L+ K++S  I+L
Sbjct: 744 ELSALKSKMASSQGDELAGQAVEIGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    +   
Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAQLPA 861

Query: 888 AIAGVASFLK 897
           A+AGV ++++
Sbjct: 862 ALAGVKAWVE 871


>gi|331006892|ref|ZP_08330140.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330419292|gb|EGG93710.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 877

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/908 (43%), Positives = 545/908 (60%), Gaps = 68/908 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  FL FF+ +GH +L SSSL+P NDPTL+FTN+GMV FK++F G +K  YQ  T
Sbjct: 2   NSADIRDAFLRFFETHGHTVLNSSSLVPNNDPTLLFTNAGMVQFKDVFLGSDKRDYQRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT      +
Sbjct: 62  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHYAWTFLTSPDWMGI 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L +TVY +D+EA+ LW K  GL A+KII I  N       DNFW+M +TGPCGPC+
Sbjct: 122 PAEKLTVTVYADDQEAYDLWHKDIGLPAEKIIHIGDNKGGKYQSDNFWAMGDTGPCGPCT 181

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GGLPG+ EE G+R+IEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 182 EIFYDHGEDIWGGLPGTPEEDGDRFIEIWNIVFMQFNRSADGSMAPLPKPSVDTGMGLER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+Q   NNYDIDLF+HL+ AS  +TG +   +  +  RVI DH+RS +FLI DG++P
Sbjct: 242 ISAVMQGVHNNYDIDLFQHLLNASATITGAQNTEHKSL--RVIADHIRSCAFLIIDGVMP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG  +     L+ AL   MG+AYPELI+ +  IE+ L 
Sbjct: 300 SNEGRGYVLRRIIRRAVRHGHKLGQQQAFFYQLVSALVEIMGTAYPELIKQQKHIEKVLL 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSH----LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            E+++F KTL++GL +L+ VL            + G+  F LYDT+G P D+  DI   R
Sbjct: 360 LEEQQFEKTLEKGLSVLESVLDSAEFTASASTQIPGETIFTLYDTYGFPTDLTNDIARER 419

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D+  + + +E QR+RARA      +G     + S  E  G+TQF GYD +     
Sbjct: 420 ELT-LDMPGYEKCMEAQRTRARA------AGKFSVDYSSSVELEGSTQFSGYDSV----- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            NG  +I+  + Q    V+    G +  +V   T FYAE+GGQ+
Sbjct: 468 -----------------NGEGNII-GLYQNAIPVDTLKEGDEGVIVLSNTSFYAESGGQI 509

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS----LVLTIDYQNRRQLS 584
           GD+G  + DG   ++ D QK       HH  + + +L  E S    +   +D   R+   
Sbjct: 510 GDSGYIVFDGGHFEVQDCQKNGS----HHLHIGK-VLSGEFSVGNGVSTRVDSDVRQATV 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NHSATHL+H AL  ILG HV Q GS +  + LRFD +H + ++  EL  IE  VND I 
Sbjct: 565 LNHSATHLMHAALRKILGEHVVQKGSLVDSEKLRFDFSHLQALSGDELARIETMVNDEIR 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N  V     + E A A GA  L   KY D VRV+S+    G   S  LCGG HV  TG+
Sbjct: 625 HNTTVAVDHCDMEQAKAKGAMMLFDEKYGDEVRVLSM----GDGFSIELCGGVHVQQTGD 680

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I + +IV+ES I +G+RRIEA+TG++A S L+   +    +A  +K +  N V ++E++ 
Sbjct: 681 IGVFHIVAESGIASGVRRIEAVTGKKALSRLLSYKQSTDQIAQLVKANSSNAVEKIEQLV 740

Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + ++ +   A  + +L   D      +  +IA VN ++H + + D K L+ + DAL+ +
Sbjct: 741 VQLKEQEKAIASMQAKLASADSGDLLKNIKQIAGVNVLAHHVVDGDGKILRDMADALKSQ 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +++ + +LV  ++  K S+L  VT+DL  +F A DL R  A ++ GG GGGRP MAQ GG
Sbjct: 801 LENSVYLLV-TNQGDKVSLLAGVTKDLTAQFKAGDLMREVAPLV-GGKGGGRPDMAQGGG 858

Query: 880 --PNGNKA 885
             P G +A
Sbjct: 859 TDPTGIQA 866


>gi|239996387|ref|ZP_04716911.1| alanyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 865

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/901 (44%), Positives = 553/901 (61%), Gaps = 48/901 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F+++F+ +GH+ + SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   STADLRNKFIDYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDCFLGAEKRSYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE  L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIEFAWNFLTKEIGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   G+  +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG+ EE G+R+IEIWNLVFMQF +Q       LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF++LI+++  + G +   N  +  RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDLFQNLIKSAASIVGSEDLENKSL--RVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ +L  EMG AYPEL+    +IE+ LR E+E+F KT
Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLAKEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG+ +L+  L  L  D +  GDV FKLYDT+G P D+  D+     L  ID   F  A
Sbjct: 362 LARGMAILNDTLETLEGDTV-PGDVVFKLYDTYGFPTDLTNDVAREHDLK-IDEEGFEAA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ QR+RA+  S   G+    K+          T F GY  + G                
Sbjct: 420 MQAQRARAQQAS-NFGADYNSKLAID-----HTTSFTGYTDVEGQ--------------- 458

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  +++V+ I      VE+   GQ+  VV D TPFYAE+GGQ GD G         
Sbjct: 459 -------ANVVELIADNA-FVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD QK     F H  I  +G +    +    ID  NR  +  NHSATHLLH AL  IL
Sbjct: 511 IVTDTQKMGNA-FAHKGIA-KGSVSKGDTATAAIDAANREAIKKNHSATHLLHAALREIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +    +RFD +H + +T+ +L  IE  VN  I  N  + T +M+ ++A A
Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTAEQLAEIERRVNQEIRANHTLATELMDLDEAKA 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY+++VRVV++     G  S  LCGGTHV+ TG+I L  I SE+ I +G+R
Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVTRTGDIGLFKITSEAGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKL 779
           RIEA+TG+ A   +  Q   L SL++ LK    NV+ RV  +  + ++L+  L  AK+KL
Sbjct: 684 RIEAVTGEHALEVVQTQQATLSSLSALLKTDSQNVLDRVVSLQNQTKELEKALNSAKQKL 743

Query: 780 --QLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             Q   + LS   +I  V  +   +  V++K L+S+MD ++ +I  GI++L G++ + K 
Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANDAKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++  VT++L  +  A +L    A  + GG GGGRP MAQ+GG       QA+  V ++L
Sbjct: 803 NLIAGVTKNLTSKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDQPENLGQALDSVNAWL 861

Query: 897 K 897
           +
Sbjct: 862 Q 862


>gi|238897262|ref|YP_002922939.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465017|gb|ACQ66791.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 875

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/904 (44%), Positives = 555/904 (61%), Gaps = 56/904 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++ + IR  FL+FF+  GH+++ SSSLIP +DPTL+FTN+GM PFKNIF G + P +   
Sbjct: 3   NSTADIRQKFLDFFKSKGHQVVSSSSLIPHHDPTLLFTNAGMNPFKNIFLGIQDPDFSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIYFAWELLTGSEWFH 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKDRLYVTVYSTDDEAYNIWADEIGIPRERIIRIGDNKGAAFCSDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ + GGLPGS  EEG+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHLWGGLPGSPEEEGDRYIEIWNIVFMQFNRLADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA VLQ  ++NY+IDLF+ LI   ++VTG   + N  +  RVI DH+R+ +FLI DG+ 
Sbjct: 243 RMAAVLQNVSSNYEIDLFRDLISGVKKVTGATDDSNPSL--RVIADHIRACAFLIFDGVR 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +P    LL +L   M     +L   +++IE+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAIRHGNKLGVKKPFFYQLLTSLIGVMKPITDQLKHHQVMIEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E F  TL+RGL LLD  L HL K + L G+ AF LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEELFSHTLERGLSLLDKKLDHL-KGDTLEGETAFLLYDTYGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID ++F+Q + EQR+RAR  S    + +T+   F     +  T+F GY+ L+       
Sbjct: 420 -IDEVTFHQKMSEQRARARQAS----AFSTDYNKFIRVAHH--TEFCGYEQLQQ------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            ++++KA+  +GE + E  +GQ+  V+ D+TPFYAE+GGQ+GD 
Sbjct: 467 -----------------TTVIKALFFRGEEINEIHAGQEALVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          ++D QK  + I VH     +G LR    +   ++ + R  +  NHSATH
Sbjct: 510 GYLKSTTAHFMVSDTQKYGQAI-VHLGQPSKGSLRISDHIQACVNNKVRDHIRSNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +     RFD +H K +T  E++++E  VN  I QN  + T
Sbjct: 569 LLHAALRQVLGKHVVQKGSLVNEKCCRFDFSHFKMMTPDEIENVESLVNQQIRQNHLIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +IM+ EDA   GA AL G KY D+VRV+S+     G  S  LCGGTH   TG+I L +I 
Sbjct: 629 QIMSLEDAKKKGATALFGEKYEDQVRVLSM-----GDFSIELCGGTHARRTGDIGLFHIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS  AGIRRIEAITG+ A + L  Q   L+ LA  LK  +  ++ R+  I +  + L+
Sbjct: 684 SESSTAAGIRRIEAITGEEANALLCQQRNVLQDLARLLKSDEKGLIERIGIIIDRNKVLE 743

Query: 772 --LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIM 826
             L H K +  L    L    +  +  +  +I+++D+ E   L+ ++D L+ ++ S +I+
Sbjct: 744 KKLQHFKDQEILQKTSLLLKNVKQIKEIKILIAQLDAVEPILLRRMIDDLKNQLGSAVIL 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++K  K S +  VT++L  +  A DL    A  + GG GGGR  MAQ+GG N N   
Sbjct: 804 LANVTK-NKISFIAGVTKNLTQQIKADDLIHYIAPKI-GGKGGGRADMAQAGGTNINSLA 861

Query: 887 QAIA 890
             +A
Sbjct: 862 TVLA 865


>gi|332184146|gb|AEE26400.1| Alanyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 865

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/901 (42%), Positives = 536/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI + DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSTDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QV   +    N  + RVI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVINAR--DINSPSLRVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAVRHGNKLGANQIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L K + ++G+VAFKLYDT+G P D+  D+   +GL  +D   F 
Sbjct: 359 KTIENGIKIFDAEIENL-KGDTVSGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQVFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + +L      ++F GY  L       ED KVL   
Sbjct: 417 AQMQVQKQRSKE------AGKFNVDYNTLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I    ++V+         VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYHDSQLVDSITEEASAVVVLDKTPFYAESGGQVGDKGVLEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLVKGRLNVNDELTAQVSDQPRLATAANHSATHLLHKALKV 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSH  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 ILGSHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVATIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SES I +G
Sbjct: 627 KSLGAQALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +      AK K 
Sbjct: 682 IRRIEAVTADKAIRHTFTNENKIVAIKDSLKANDANLIDKLKSMLEQIKNQDKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L+  +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  +     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNAMTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|319786629|ref|YP_004146104.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465141|gb|ADV26873.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 882

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/909 (44%), Positives = 553/909 (60%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTARIRSDFLEFFKDKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIAWAWELLTGVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ +W+   G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDEAYGIWRDQIGVPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+ +  +TG     N  +  RVI DH+R+SSFLI DG+LP+N
Sbjct: 248 AILQHVHSNYEIDLFQALIRKAAALTGTPDLENKSL--RVIADHIRASSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+  L  +MG AYPEL  A+  ++  L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFHQLVDELVAQMGEAYPELPAARDTVQRALKAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V +H     ++ G  AF+LYDT+G PLD+ QDI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAAH-AAGAVIPGVDAFRLYDTYGFPLDLTQDIARERGLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E+QR  ARA     G G   ++   L      T F+GYD L  ++ MK    
Sbjct: 424 VAGFEAAMEQQRETARAAG-KFGGGV--QLPAELVATLEPTVFLGYDALE-AEGMK---- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G  V+   SG++  V+ D+TPFYAE+GGQ+GDTG  
Sbjct: 476 -----------------VVALLHDGRPVDSVASGEEAIVLLDRTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G +LQ+ D QK A     H   V  G L+T   L   +D + RR + +NHSATHLLH
Sbjct: 519 EGEGAKLQVGDTQKFAGQFHGHFVRVAEGGLKTGQLLRGAVDGERRRAIVLNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +P+ + E+  IE  VND +  N  VV + M
Sbjct: 579 GALRGLLGTHVQQKGSLVAPDRLRFDFSHFQPVNAEEVARIERMVNDEVRANHAVVIQQM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRVV +        S  LCGGTHV+ TG+I L  IVSE 
Sbjct: 639 GIQEALDLGAMALFGEKYGERVRVVKMG------ESVELCGGTHVARTGDIGLFKIVSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TGQ A  H+  +   L   AS L  S+G VV R   + E  RKL  +L
Sbjct: 693 GVSAGVRRIEALTGQAALEHIAAEGRALDEAASLLGGSRGEVVERARAVAERIRKLEREL 752

Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K   +          DV+    ++  +  +D+K L+  +D L++++   +++L G
Sbjct: 753 ESIKAKAASSAAADLAGSAVDVSGIKVLAARLEGIDAKGLREAVDRLKQQLGDTVVLLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++  K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 -AQGGKVALVAGVNGAATGKVKAGELLAHVAGRI-GGKGGGRPDLAQGGGEDGPALAPAL 870

Query: 890 AGVASFLKK 898
           A V +++ +
Sbjct: 871 ADVPAWVAE 879


>gi|260913378|ref|ZP_05919859.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632609|gb|EEX50779.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 874

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/914 (43%), Positives = 553/914 (60%), Gaps = 60/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHTKGHQIVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI    ++TG K   N  +  RV+ DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKDLTNKSL--RVVADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M SA  ++ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIEAMASAGIQVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD  L+G VAFKLYDT+G P D+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALNQV-KDNELSGKVAFKLYDTYGFPFDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F + +E QR RA++ S  G+      ++        G T F GY         
Sbjct: 418 T-IDEAGFEREMEAQRLRAQSASQFGMDYNNVIRM-------DGVTVFEGY--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + + L +             V A+  +G+ VE   +GQ   ++ D TPFYAE+GGQ+G
Sbjct: 461 -TESETLAK-------------VTALFCEGKPVERVEAGQSAVIILDNTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   G     ++ D QK    +F H   V  G L     +   +D + R + S+NHSA
Sbjct: 507 DAGRLDGQDFAFEVEDTQKYGR-VFGHIGKVTIGSLAIGQLVNAVVDVERRHRTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG+HV Q GS ++   LRFD  H + IT  +L  IE  VN  I  N  +
Sbjct: 566 THLLHAALRQVLGTHVVQKGSLVSDVALRFDFAHPEAITKEQLIEIERVVNQQIRANHVI 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ E A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  
Sbjct: 626 QTEIMDLEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +++E++I AG+RRIEAITG+ A + L  Q   L   A  LK    ++V ++ +  E+ +K
Sbjct: 681 VIAETAIAAGVRRIEAITGENAITWLQEQQALLAQSAELLKSDVNSIVDKINQQQEKLKK 740

Query: 770 L--QLIHAKRKLQLNV-EDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSG 823
              +L+  K K+ +    DL+ + I ++N +S II +   VDSK L+ ++D L+ ++ S 
Sbjct: 741 TEKELLSLKEKVAVQAGSDLAKNAI-NINGVSVIIQQLNGVDSKSLRVMVDDLKNQLGSA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I    +  E K ++++ V+ DL  +  A +L  + A+ + GG GGGRP MA +GG    
Sbjct: 800 VIAFASVI-EGKVNLIVGVSNDLTAKVKAGELVNVLAQEV-GGKGGGRPDMAMAGGTQVE 857

Query: 884 KADQAIAGVASFLK 897
           K  QA+   + +LK
Sbjct: 858 KVSQALLVGSEWLK 871


>gi|28899322|ref|NP_798927.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839216|ref|ZP_01991883.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260878987|ref|ZP_05891342.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260895460|ref|ZP_05903956.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|260903524|ref|ZP_05911919.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|31076994|sp|Q87LR3|SYA_VIBPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28807546|dbj|BAC60811.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747281|gb|EDM58267.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308088224|gb|EFO37919.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308090433|gb|EFO40128.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308108704|gb|EFO46244.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|328474145|gb|EGF44950.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 860

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/912 (42%), Positives = 550/912 (60%), Gaps = 73/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGQFGTDYNAAIKVDTQ-----TEFCGYVGTKG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 IRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T +
Sbjct: 570 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           S I AGIRRIEA+TG+ A   +  Q    +EKL   A            + + + +E +K
Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQAAKYEEKLAESAQ-----------KAKTLEKELQK 733

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
           L     K K+          K  +VN    +++ +   DSK L++++D ++ ++ SG+++
Sbjct: 734 L-----KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVL 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +   
Sbjct: 789 LANVT-DDKVGLIAGVTKDLVGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALP 846

Query: 887 QAIAGVASFLKK 898
           +AI  V  +L++
Sbjct: 847 EAIKTVQPWLEE 858


>gi|148978178|ref|ZP_01814708.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145962600|gb|EDK27876.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 860

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/916 (42%), Positives = 547/916 (59%), Gaps = 81/916 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+I+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +  G  YE  +  + RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAETIG--YEDLSNQSLRVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+E QR RAR A   G     T K+  +       T+F GY    G       
Sbjct: 420 DEAGFEKAMEVQRQRAREAGQFGTDYNATIKVETN-------TEFCGYTGTEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+  +GE V    +G K  ++ ++TPFYAE+GGQ GDTG
Sbjct: 466 ----------------AGEISALFVEGEEVASLSAGDKAIIILEETPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +  T+D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVEDTQKLGNA-FAHHGELVEGVFAKGDKVEATVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHAALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           E  I AGIRRIEA+TG+ A   +  Q    +EKL   A   K  +              +
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKALE--------------K 729

Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++QL+  K        +   VE++S  K+     +   I   D+K L++++D  + ++ S
Sbjct: 730 EIQLLKEKMAAAESANIMGKVEEISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGS 784

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GII++  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + 
Sbjct: 785 GIILIANVA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQI-GGKGGGRPDMAQAGGTDV 842

Query: 883 NKADQAIAGVASFLKK 898
               +A+  V ++L++
Sbjct: 843 EALPEALKSVRTWLEE 858


>gi|296133407|ref|YP_003640654.1| alanyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031985|gb|ADG82753.1| alanyl-tRNA synthetase [Thermincola potens JR]
          Length = 884

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/899 (42%), Positives = 566/899 (62%), Gaps = 46/899 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK +F G ++  Y+  TT 
Sbjct: 4   NEIREKFLKFFENKGHTIIASSSLVPHDDPTLLFTNAGMNQFKEVFLGLDRRPYKRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L + R
Sbjct: 64  QKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWQFLTEELGLPKDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY TVY +DEEA +LW++I+GL  +++IR+   DNFWSM +TGPCGPCSE+  D+GE   
Sbjct: 124 LYATVYRDDEEAAQLWQEIAGLPPERVIRLGEKDNFWSMGDTGPCGPCSEVLIDRGEEFK 183

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           C        + + +R++EIWNLVFMQ+ +    E   LPK SIDTGMGLER+A+V+Q+  
Sbjct: 184 CAADNCAIGACDCDRWLEIWNLVFMQYNRDESGEMTPLPKPSIDTGMGLERIASVMQKVN 243

Query: 242 NNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           +N+D DLFK ++   E+++G + Y+       RVI DH R+ +FLI+DG+LP+NEGRGYV
Sbjct: 244 SNFDTDLFKPIMAKVEELSGSVYYQDERGFPFRVIADHARACTFLISDGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + ++LG  +P +  ++  +   MG AYPE+ + +  +E+ ++ E+ERF +
Sbjct: 304 LRRILRRAVRFGKVLGIEKPFLYQMVGVVADLMGDAYPEIREKQTYVEQVIKIEEERFHE 363

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+ L+  ++  +  +  + ++G  AF LYDT+G PLD+ +DI    GL  +D   F
Sbjct: 364 TLHEGMRLVSDIVEKVKAEGRQSISGQEAFLLYDTYGFPLDLTEDIAEEHGLT-VDKDGF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+EEQR+RARA          ++++  + +K GAT+F GY  L       E R     
Sbjct: 423 AAAMEEQRTRARAARQDEAMLAGQELYAEVGQKLGATEFTGYSEL-------ETR----- 470

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD- 537
                     +++V  IV + E   E  +G++VEV+ D+T FY E+GGQ+GD G    + 
Sbjct: 471 ----------ANVVALIVDK-EFRHEVRAGEQVEVIMDRTCFYGESGGQVGDRGILESNR 519

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G  +++TD +K   G+ VH   VE+ I+     +   +D + R+Q++ NHS THLLH AL
Sbjct: 520 GAVIKVTDTKKTFNGLMVHLGTVEKDIVSFGDVMDARVDARRRKQIARNHSVTHLLHKAL 579

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + P+ LRFD TH + +T  EL+ +ED VN++I  NL V     + +
Sbjct: 580 KEVLGDHVNQAGSLVEPERLRFDFTHFRAVTPEELQKVEDRVNEMILANLDVHAFETSLD 639

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA AL G KY ++VRVV +     G +S  LCGGTH+ STGE  L  I+SES I 
Sbjct: 640 EAKALGATALFGEKYGEKVRVVKM-----GDYSMELCGGTHLRSTGEAGLFKILSESGIG 694

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----WEEYRKLQLI 773
           AG+RRIEA+TG+    ++  Q+ +LK +A  +K S   VV RVE I     E+ ++L+ +
Sbjct: 695 AGLRRIEAVTGEGTLRYIAEQEARLKDIARLVKSSPAEVVKRVENIVDNLREKEKELEQL 754

Query: 774 HAK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            A+  R+   N+ D    ++A    ++      D   L+ + D L+ K+ SGI++L G +
Sbjct: 755 QARLAREESQNLMD-KVKEVAGAKVLAVPTGAPDMDALRHMGDMLRDKLGSGIVVL-GAT 812

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              K + + +VT+DL+ +  +A ++ +  A+V  GGGGGGRP MAQ+GG +  K + A+
Sbjct: 813 LGDKVNFVAMVTKDLVAKGAHAGNIIKEVARV-AGGGGGGRPDMAQAGGKDPAKLEAAL 870


>gi|319779380|ref|YP_004130293.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109404|gb|ADU92150.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 874

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/909 (43%), Positives = 561/909 (61%), Gaps = 55/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF+   H ++ SS LIP NDPTL+FTN+GMV FK++F G+EK  Y   TT 
Sbjct: 4   SEIRHNFLKFFESKNHTIVSSSPLIPANDPTLLFTNAGMVQFKDVFLGKEKRTYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLT  F L + +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAITYAWELLTTVFQLPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY ED+EAF +W+   G+  +KIIRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LLVTVYAEDDEAFGIWRDKVGVPEEKIIRIGDNKGSRYASDNFWQMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+R+IEIWNLVFMQFE+ ++     LPK  +DTGMGLER+A V
Sbjct: 184 DHGPEIWGGPPGSPEEDGDRFIEIWNLVFMQFERDSEGVLHPLPKPCVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLFK+LI+A+   T      NN +  +VI DH+R+ SFLI DG++P NEG
Sbjct: 244 LQHVHSNYEIDLFKNLIKAAAVATNTSDLENNSL--KVIADHIRACSFLICDGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG  +     L+PAL  EMG A+PELI+ +  I   L+ E++
Sbjct: 302 RGYVLRRIIRRALRHGHKLGQNKTFFHTLVPALTKEMGEAFPELIEWQDRISSILKQEED 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TLD G+ +L+  LS+L K + ++G   F LYDT+G P+D+  DI   RG+ G+D+ 
Sbjct: 362 RFQETLDHGMKILESCLSNLEKGQNIDGQTLFILYDTYGFPVDLTADIARERGV-GVDLD 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F +A+++Q+  ARA      SG   K   +L      T F GY+ L  S+         
Sbjct: 421 GFEKAMDKQKETARA------SGKF-KAQENLSYSGTDTSFSGYEHLVESR--------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + ++AI   G  VE A  GQ+V VV D+TPFYAE+GGQ+GD+G  IG
Sbjct: 465 -------------ANIQAIYVDGASVESADEGQEVVVVLDRTPFYAESGGQVGDSGFLIG 511

Query: 537 DGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                ++ I+D +K    +F H+  VE+G ++   S+   ++ +NR  ++ +HS THL+H
Sbjct: 512 SDTDKQVSISDTRKITPTVFGHYGRVEKGSIKLNDSVDAIVNAENRVLVTAHHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD +H+ P+T  E++ +E  VN+ I         +M
Sbjct: 572 LALREVLGDHVKQKGSLVDSEKTRFDFSHNSPMTEEEIRKVELLVNNQILMGRDTYVEVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             +DA+ SGA  L G KY D VRV+ +        S  LCGGTHVS+TG+I L  I+SES
Sbjct: 632 PYDDALKSGAIGLFGEKYGDFVRVMQIG------DSRELCGGTHVSNTGQIGLFKIISES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+ G +A   +      +   A+ LK S  ++V +++   ++   L  ++
Sbjct: 686 GVASGVRRIEAVAGFKALEWIQNTYRVINQSANLLKSSPKDLVSKIKIQIDQISALEKEI 745

Query: 773 IHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            H K+KL   +  DL  S  +++ +  ++  + +V++K L+ ++D ++ K+ SG++ +  
Sbjct: 746 THLKQKLISASSGDLLSSLKEVSGIKTLACEVKDVETKALRDLVDQMKSKLGSGVVAIFL 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K ++   VT+DL  +  A DL    +++L GG GGGRP MA  GG       +AI
Sbjct: 806 VEGD-KVTIATGVTKDLTHKLKAGDLVSRLSQIL-GGKGGGRPDMAMGGGTKVEDLQKAI 863

Query: 890 AGVASFLKK 898
             V +++K+
Sbjct: 864 LDVEAWVKE 872


>gi|300692180|ref|YP_003753175.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299079240|emb|CBJ51912.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 880

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/916 (42%), Positives = 545/916 (59%), Gaps = 59/916 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    
Sbjct: 2   KASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L  
Sbjct: 62  SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY  D+EA+ +W K+ GLS ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 EKLWATVYHNDDEAYDIWTKVIGLSPERVVRIGDNKGAPYASDNFWQMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229
           F+D G  + GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG
Sbjct: 182 FYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGMG 241

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           LER+A +LQ   +NY+IDLF+ L+ A+ + T  K   NN +  RVI DH+R+ SFLI DG
Sbjct: 242 LERLAAILQHVHSNYEIDLFQALVGAAARETNTKDLANNSL--RVIADHIRACSFLIVDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + +
Sbjct: 300 VIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVEDLVTQMGEAYPELREARDRVVD 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT+G PLD+ QD+ C 
Sbjct: 360 VLRTEEARFFETIEHGMSILDGALGELKATGGKMLDGELAFKLHDTYGFPLDLTQDV-CR 418

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
                +D  +F+ A+  QR +ARA      +G  +    SL      T F GYD L    
Sbjct: 419 ENDVIVDEAAFDAAMNRQREQARA------AGKFKMAAGSLDYTGDKTTFHGYDQLLSE- 471

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                +S V A+   G  V+E   GQ   VV D TPFYAE+GGQ
Sbjct: 472 ---------------------TSRVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G      +   + D QK    +F HH  +  G+L+   ++   +D   R +   NH
Sbjct: 511 VGDEGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N 
Sbjct: 571 SATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEILANA 630

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               ++M  +DA+ SGA AL G KY D VRV+++        S  LCGGTHV+ TG+I L
Sbjct: 631 STGAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIG------SSKELCGGTHVARTGDIGL 684

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ 
Sbjct: 685 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRISEAAAALRAQPSELTQRIVQVQDQV 744

Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L  +L   K KL     D    +  DV     ++  +   D+K L+  MD L+ K+++
Sbjct: 745 KSLEKELERLKSKLASAQGDELAEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 805 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 862

Query: 883 NKADQAIAGVASFLKK 898
           +K  QA+AGV +++++
Sbjct: 863 DKLPQALAGVTAWVQQ 878


>gi|149378261|ref|ZP_01895973.1| alanyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149357458|gb|EDM45968.1| alanyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 876

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/913 (43%), Positives = 566/913 (61%), Gaps = 60/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL++F++ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+EK  Y   TT
Sbjct: 3   TAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDVFLGREKRDYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT +    L 
Sbjct: 63  TQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGDDWLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY  D+EAF +W +  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 KEKLWVTVYASDDEAFDIWNQEVGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS EE G+RYIEIWN+VFMQ+ +Q   E   LPK S+DTGMGLER+
Sbjct: 183 IFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRQADGEMLPLPKPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
             VLQ   +NY+IDL + L+ A+  + G         + RV+ DH+RS +FLI+DG++P+
Sbjct: 243 TAVLQGVHSNYEIDLMQDLLNAASDILGGVE--TTEASLRVVADHIRSCAFLISDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRG+VLRRI+RRA  +   LG T+P    L  AL   MG A+P+L+ ++  IE+ L  
Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGATQPFFHKLTGALVELMGDAFPQLVSSRKQIEKVLLQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD+GL LL+  ++ L   EI  GD  F LYDT+G P+D+  DI   RGL  +
Sbjct: 361 EEEQFAKTLDKGLRLLEQDIAALESSEI-PGDTIFTLYDTYGFPVDLTNDIARERGLT-L 418

Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   + +A+E QR RARA S  G+          +++   G+T+F GY+ + G +     
Sbjct: 419 DYDGYEKAMERQRERARAASKFGMDYNAA---GLNIE---GSTEFTGYEHIDGHE----- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              ++ ++  GE  + A +G +  +V ++TPFYAE+GGQ+GDTG
Sbjct: 468 ------------------TIRTVIVGGE-EKAAQAGDEAILVLERTPFYAESGGQVGDTG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G R ++TD QK+     +H   V  G L   + +   ID+  R +   NHSATHL
Sbjct: 509 LLTWSGGRFKVTDTQKEGSN-HLHIGTVIEGELFPGLEVDARIDHARRERTKKNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV+Q GS + PD LRFD +H + +T  +L+ IE  VN+ I  N PV T 
Sbjct: 568 MHAALRNVLGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILDNTPVETE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I + E A A GA AL G KY D VRV+S+  +    +S  LCGGTHV+ TG+I L  I S
Sbjct: 628 ITDMEQAQAKGAMALFGEKYGDTVRVLSMGSD---AYSVELCGGTHVARTGDIGLFRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G+RRIEA+TG  A   +   ++ L+  A  +K S+ ++V +V++  +  R+L+ 
Sbjct: 685 ESGISSGVRRIEAVTGFGALEWVEETEQTLREAAKLVKGSRESLVEKVQQALDRNRQLEK 744

Query: 773 -IHA-KRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIM 826
            I+A + KL  +   DL+   + DV  +  + SE++  + K++M   D L+ K+  G+++
Sbjct: 745 DINALQAKLASSAGTDLASSAV-DVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  + ++ K +++  VT+    R  A DL + L+A+V   G GGGRP MAQ GG + +K 
Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRVKAGDLMKHLAAQV--DGKGGGRPDMAQGGGNDPSKL 860

Query: 886 DQAIAGVASFLKK 898
             A+AGV ++++K
Sbjct: 861 ADALAGVPAWVEK 873


>gi|53802423|ref|YP_112920.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|59798499|sp|Q60BS6|SYA_METCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53756184|gb|AAU90475.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 867

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/905 (41%), Positives = 548/905 (60%), Gaps = 56/905 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF   GH ++ SSSL+P NDPTL+FTN+GMV FK++F G+E   Y    + 
Sbjct: 4   AELRARFLKFFADRGHTVVASSSLVPVNDPTLLFTNAGMVQFKDVFLGREHRPYVRAASA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L   R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIVYAWEFLTEVLMLPPER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ITVY ED+EA ++W +  G+   +  RI T+DNFWSM +TGPCGPCSEIF+D G  + 
Sbjct: 124 LWITVYAEDKEAERIWLEEVGVDPGRFTRIATSDNFWSMGDTGPCGPCSEIFYDHGPSVA 183

Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PG+ EE G+RY+EIWNLVFMQ+E+        LPK S+DTGMGLER+A V+Q   NN
Sbjct: 184 GGPPGTPEEDGDRYVEIWNLVFMQYERAGDGTLTPLPKPSVDTGMGLERLAAVMQRVRNN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF++L++A+ ++ G      + +  RVI DH+RS +FL+ DG+LP+NEGRGYVLRR
Sbjct: 244 YDIDLFRNLVKAAAELAGTTDLAQSSL--RVIADHIRSCAFLVTDGVLPSNEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  EP    L+  LC EMG AYPEL++A+  +E+ L  E+ERF +TL+
Sbjct: 302 IIRRAIRHGYKLGIREPFFYKLVGPLCAEMGQAYPELVEARPRVEQVLDKEEERFAETLE 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ +LD  +  LG   +++GD AF+LYDT+G P+D+  D+    GL  +D+  F +A+E
Sbjct: 362 QGMKILDVAIRDLGS-PVISGDTAFQLYDTYGFPVDLTADVAREHGLQ-VDMAGFERAME 419

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR RARA S       +++I   +     A +F GY      +   ED +++       
Sbjct: 420 AQRERARAAS-HFSVDYSQEIHLDV-----ACEFTGY------RNAVEDTRIV------- 460

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                     A+++ G+ V+   +G+   VV ++TPFYAE+GGQ+GD G    D    ++
Sbjct: 461 ----------ALLRDGQAVDRLEAGEDGVVVLEKTPFYAESGGQVGDRGVIRSDSAVFEV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D +K+   + +H   +  G L         ++   R   ++NHSATHLLH AL  +LG 
Sbjct: 511 ADTRKQGSDLILHRGKLREGALLRGAVCRAEVEQSLRLATALNHSATHLLHAALRRVLGE 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS + P+ LRFD +H +P++  +L  IE  VN  I +N  V   +M ++ A+  G
Sbjct: 571 HVTQKGSLVDPERLRFDFSHFEPVSPEQLDEIERLVNREIRRNAEVTAEVMAKDAAMRLG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRV+ +     G  S+ LCGG H    G+I L  IVSES + AG+RRI
Sbjct: 631 AMALFGEKYGDDVRVLRI-----GDFSTELCGGIHARRAGDIGLFKIVSESGVAAGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--- 780
           EA+TG  A   +   +  L+ LA  +K  +  +  R+++++E+ R L+     R+L+   
Sbjct: 686 EAVTGAAAVEAVEATERLLRRLAERMKAGRDTLEERLDQMFEKNRALE-----RELERLK 740

Query: 781 -----LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                    DL+     IA V  ++  + E D++ L+ ++D L+ ++ S  I+L  +   
Sbjct: 741 AKTAGAAGADLASRAVDIAGVKVLAARVDEADARMLRELVDQLKDRLGSAAIVLAAVEG- 799

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S++  VT D      A DL    A  + GG GGGRP +AQ+GG    +   A+ GV 
Sbjct: 800 GKVSLVAGVTRDQTGHIRAGDLVNSVATRI-GGKGGGRPDLAQAGGNRPEELQGALDGVP 858

Query: 894 SFLKK 898
            ++++
Sbjct: 859 EWVRR 863


>gi|258404449|ref|YP_003197191.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796676|gb|ACV67613.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 880

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/894 (42%), Positives = 542/894 (60%), Gaps = 45/894 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F + GHE++ SS L+P +DP+L+FTN+GMV FK +F GQ+K  Y  
Sbjct: 1   MVTAAEIRQRFLEYFARQGHEIVKSSPLVPKDDPSLLFTNAGMVQFKKVFLGQDKRNYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  A+  AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAVDFAWRFLTEELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY +VY ED+EA++LWK+I+GL  ++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKDRLYASVYREDDEAYELWKEIAGLPDERIYRLGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C P    G   E +R++EIWNLVFMQF++        LP+ SIDTGMGLER+A V 
Sbjct: 181 SHMSCGPECEIGVC-ECDRFLEIWNLVFMQFDRDASGTMTPLPQPSIDTGMGLERIAAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF  LI+ + +  G+ Y  +  +N   RVI DH R+ +F++ADGILP+NE
Sbjct: 240 QGVYSNFDTDLFSGLIRTTAERAGVVYGKDEEINTALRVIGDHSRAVAFMLADGILPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RL+G  +P +  +   + +EMG  YPEL +    + + +R E+
Sbjct: 300 GRGYVLRRLIRRAFRFGRLIGLRDPFLFDVCSQVVSEMGDDYPELHETAAFMVKVVRQEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ERFG TLD+GL LL+  L  L   G+ ++  G VAFKLYDT G P+DI+ D+  ARG   
Sbjct: 360 ERFGTTLDKGLALLEEELESLQGAGQTQVPGG-VAFKLYDTFGFPIDIVNDVAEARGFT- 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + ++ Q+ R++A   G G+      + +L E    + F+GY+ L+ +      
Sbjct: 418 VDEAGFQEHMQAQKERSKAAWSGSGATDMAARFVALLEAGVQSDFVGYETLQST------ 471

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S I   +   G+ V+E  +G+   +V  +TPFY E+GGQ+GD+G
Sbjct: 472 ----------------SRIAALLKDDGQEVQELAAGENGYLVTARTPFYGESGGQVGDSG 515

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             IG      + D  K A  + VH   V++G L  +    L +D   R   + NH+ THL
Sbjct: 516 RVIGPRGDGAVLDTIKPAAQLTVHSITVKQGSLAVDDEAELIVDEGERVATARNHTVTHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +  D LRFD+TH + +T+ E++++ED VN  I  + PV + 
Sbjct: 576 LHAALREVLGEHVKQAGSLVASDRLRFDLTHIQALTAEEIQAVEDKVNQSILADTPVESA 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+   A+  GA AL G KY D VRV+ +     GV S  LCGGTH+ +TG+     I+S
Sbjct: 636 HMDYSQAVQGGAVALFGEKYEDEVRVIDIP----GV-SRELCGGTHLRATGQAGFFCILS 690

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+++ AG+RRIEA TG +A      Q  +L+  A  LK  Q  + GR++++ E+ + L+ 
Sbjct: 691 EAAVSAGVRRIEAATGWQAVRTFTEQRTRLREAAQLLKAPQTEITGRIQDLQEQLKSLRK 750

Query: 773 IHAKRKLQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                + QL      DL     ++  +  ++  +   D K L+ +MD ++ K+ SG+++L
Sbjct: 751 EKEALEGQLQSAKGGDLMSQVEELGGIPVLTAEVEAPDVKTLRGMMDDVRSKLSSGVVLL 810

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               +E KA +++ V++DL DRF A  L +  A+ + GG GGGRP +AQ+GG N
Sbjct: 811 AA-KQEAKAMLILFVSQDLHDRFTAPGLIKQVAQEI-GGSGGGRPDVAQAGGGN 862


>gi|251788614|ref|YP_003003335.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247537235|gb|ACT05856.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 875

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/909 (43%), Positives = 556/909 (61%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSSEWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDIDLF  LI  + +V G     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ISAVLQHVNSNYDIDLFSTLIAEAARVVGTDDLNNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGPLVDVMGSAAEELKRQQSLVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL+LLD  +  L K + L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 NEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR RAR  S G G+      + SL     +T F GY            
Sbjct: 420 VDEAGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDESTTFCGY------------ 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     + T   S++V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD G
Sbjct: 462 ----------ERTEQQSTVV-AIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +    R  + D QK  + I  H   + +G+LR    +   +D+  R ++ +NHSATHL
Sbjct: 511 TLVSAAARFSVVDAQKYGQAIG-HVGSLVQGVLRVNDKVDAAVDHVRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +   +++ +ED VN  I +NLPV T 
Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVDTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A A GA AL G KY+++VRV+S+     G  S  LCGGTH   TG+I L  IVS
Sbjct: 630 VMALDAARAKGAMALFGEKYDEQVRVLSM-----GDFSIELCGGTHARRTGDIGLFQIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA+TG+ A   L  Q + L  +   +K    N+  +V  + E  R L+ 
Sbjct: 685 ESGTAAGVRRIEAVTGENAIVALHQQSDVLHEVTQLVKGDSNNLADKVRSLLERTRGLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S    K  D+N +  ++++   V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQQAAQESSSLSGKAKDINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K S++  VT++L DR  A +L    A  + GG GGGRP MAQ+GG +      
Sbjct: 805 STVA-DGKVSLIAGVTKELTDRVKAGELVGFVANQV-GGKGGGRPDMAQAGGSDVGALPS 862

Query: 888 AIAGVASFL 896
           A+  + +++
Sbjct: 863 ALTSIEAWV 871


>gi|88860236|ref|ZP_01134874.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88817434|gb|EAR27251.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 866

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/907 (43%), Positives = 543/907 (59%), Gaps = 58/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL++F    H+ + SSSL+P NDPTL+FTN+GMV FK++F G +K  Y   T
Sbjct: 5   TTAQIRQAFLDYFSSKQHQAIASSSLVPGNDPTLLFTNAGMVQFKDVFLGADKRPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L  
Sbjct: 65  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTTVLKLPT 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY  D+EAF +W K  GL AD+IIRITT DNFWSM +TGPCGPCSEIF+D G+ 
Sbjct: 125 EKLLVTVYHTDDEAFDIWHKQVGLPADRIIRITTTDNFWSMGDTGPCGPCSEIFYDHGDD 184

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PGS+EE G+R+IEIWNLVFMQF +        LPK S+DTGMGLER++ ++Q   
Sbjct: 185 IWGGPPGSAEEDGDRFIEIWNLVFMQFNRHADGSMEPLPKQSVDTGMGLERISAIMQGVH 244

Query: 242 NNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           +NY+ID+F+ LI+A+  VT  +  E  ++   RVI DH+RS +FLIADG++P+NEGRGYV
Sbjct: 245 SNYEIDIFQGLIRAAADVTNAQDLEDKSL---RVIADHIRSCAFLIADGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +     L+ AL  +MG AY EL + + +IE+ LR E+E+F K
Sbjct: 302 LRRIIRRAVRHGNKLGAKDNFFHKLVGALAEQMGDAYQELYKQREIIEKVLRIEEEQFSK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  L  +  D ++ GDV FKLYDT+G P D+  D+   R +  ID   F  
Sbjct: 362 TLERGLAILEDGLKDITGD-VIPGDVVFKLYDTYGFPADLTADVARERFMT-IDEPGFQA 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+  +   G+   E++     +K+  T F GY+                   
Sbjct: 420 CMAAQRKMAQ-QAGKFGTDYNEQL---KSDKH--TDFKGYE------------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S  V  +  +G+ V     GQK  VV D+TPFYAE+GGQ GD G     G  
Sbjct: 455 ----HEHFSGTVIELFFEGQSVNSLADGQKGIVVLDRTPFYAESGGQAGDKGILKIAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + +  K     F H  +++ G +     +   ID   R  +  NH+ATHLLH AL  +
Sbjct: 511 FSVYNTTKLGNA-FAHTGVIQ-GQIALNDRVDAQIDTTRRDNIRKNHTATHLLHEALRQV 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  + LRFD +H + +T A+L  IE  VN  I +N+ + T +M  +DA 
Sbjct: 569 LGEHVGQKGSLVESERLRFDFSHFEGVTKAQLIEIELMVNAEIRRNVDLQTELMQIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVVS+     G  S  LCGGTHV   G+I L  IVSES I AGI
Sbjct: 629 AKGAMALFGEKYDDEVRVVSI-----GEFSIELCGGTHVKRLGDIGLFKIVSESGIAAGI 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A   +  Q E L  +A+ +K    + V +V  + E  + L+    K   Q
Sbjct: 684 RRIEAVTGAAAIEVMHHQAEVLNHIAALVKSDANSAVEKVTALVERTKGLE----KEINQ 739

Query: 781 LNVEDLSCH---------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           LN +  S           +IA V  +   ++  +SK L+ ++D L+ K+ SG+I L G++
Sbjct: 740 LNDKLASAAGAGLLDSVIEIAGVKVLIANVAGTESKALRGMVDDLKNKLGSGVIAL-GVA 798

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +  K S++  VT+DL  +F A +L    A+ + GG GGGRP MAQ+GG        A+  
Sbjct: 799 EGDKVSLITGVTKDLTGKFKAGELVNFMAQQV-GGKGGGRPDMAQAGGSEPEHLASALDS 857

Query: 892 VASFLKK 898
           VA+++ +
Sbjct: 858 VAAWISE 864


>gi|255319660|ref|ZP_05360869.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262378543|ref|ZP_06071700.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255303277|gb|EET82485.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262299828|gb|EEY87740.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 897

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/928 (43%), Positives = 540/928 (58%), Gaps = 76/928 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 9   AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGAEKRDYVRAVSS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT E    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFLTSEQWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY TVY  D+EAF +W K  GL A++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DRLYATVYHTDDEAFDIWNKEIGLDAERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 189 FYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHALPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH----RVIVDHLRSS 282
            VLQ   +NY+IDLF+HL++A+ ++ G+          E N  V++    +V+ DH RS 
Sbjct: 249 AVLQHVNSNYEIDLFQHLLKAAAEIIGVDTASLEAEAKEKNTPVHYPASLKVVADHARSC 308

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
            FLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG+AYPEL  
Sbjct: 309 CFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGTAYPELEA 368

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K  IE  L  E+E+F KTL++GL LL+G L+ L K  I+ G++ FKLYDT+G P+D+  
Sbjct: 369 NKARIEAALIKEEEQFAKTLEQGLKLLEGELTQL-KGSIIPGEIVFKLYDTYGFPVDLTA 427

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           DI   R L+ ID   F + +  QR RAR       +G     + S+ +    T+F GYD 
Sbjct: 428 DIARERDLS-IDEAGFEKEMAAQRQRARE------AGKFAVDYNSIVKVEDETEFSGYDA 480

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           + G                          + AI + G +V+E   G +  +V +QTPFYA
Sbjct: 481 IEG-----------------------QGQIIAIYKDGTLVDEVTEGDEALIVLNQTPFYA 517

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GDTG    +    ++ D  KK+   FVH  IV  G L+   ++  T+  + R  
Sbjct: 518 ESGGQIGDTGIFKNETGIFEVQDT-KKSGNAFVHQGIVTMGNLKVTQNVEATVKAELRAA 576

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ IE  VN  
Sbjct: 577 TARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLVNAE 636

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTH 698
           +  N  V T +++ E A   GA  L G KY   VRV+S    +E ++  V    LCGG H
Sbjct: 637 VIANTAVTTELLDIETAKTKGAMMLFGEKYGSEVRVLSMGSIIEEKNFSVE---LCGGIH 693

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  I SES + AGIRRIEA+TG +A   +   D  +  + S LK  +   V 
Sbjct: 694 VKRTGDIGLFKITSESGVAAGIRRIEAVTGTKALELVQKADSDINQINSLLKAQKDQTVE 753

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLN--------VEDLS-CHKIADVNFMSHIISEVDSKEL 809
           RV+   E    LQ    K+  QLN         E LS    +A  + +   +  +D+K L
Sbjct: 754 RVQTAVENVSALQ----KQIEQLNQKLANFQAAELLSQVQTVAGRSTLITTVQGMDAKSL 809

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +++ D+ + K+   +I+L G+  + K S++  V +D      A D+ +  A  L GG GG
Sbjct: 810 RNLHDSTKSKLDHAVIVLAGVDGD-KVSLIASVAKDFTSSIKAGDIIKHLATEL-GGKGG 867

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P +AQ G P   K +Q +A + ++L+
Sbjct: 868 GKPDLAQGGAPLNEKFEQVMADLTAWLE 895


>gi|325916030|ref|ZP_08178320.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537706|gb|EGD09412.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
          Length = 882

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 542/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FFQ  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFQGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASGLTGVTDLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVLARDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V +     E++ G  AF+L+DT+G P+D+  DI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFDDVAAR--SQEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAG-KFGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + ++I D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGSDVSIEIVDTQKFAGQFHGHVGRITEGALALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGEHVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   AS L  +   VV +V  + E  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLFEAASLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL  S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S  K A V  V             L  +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASAGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGAALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 DGVPSWVKQ 879


>gi|120553897|ref|YP_958248.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|205830137|sp|A1TZ92|SYA_MARAV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120323746|gb|ABM18061.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 876

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/914 (43%), Positives = 562/914 (61%), Gaps = 62/914 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FLE+FQ+ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   T+
Sbjct: 3   TAELRQAFLEYFQQQGHAIVPSSSLVPHDDPTLLFTNAGMNQFKDLFLGREERDYTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L 
Sbjct: 63  SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGEQHLNLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q +L++TVY ED+EAF +W +  G+ A++I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 QEKLWVTVYAEDDEAFDIWNQEIGVPAERIVRIGDNKGARYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G  + GG PGS EE G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLER+
Sbjct: 183 IFFDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ L++A+  + G         + RV+ DH+RS +FLIADG++P+
Sbjct: 243 AAVLQGVHSNYEIDLFQDLLKAASDILGGA--ATTEASLRVVADHIRSCAFLIADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRG+VLRRI+RRA  +   LG T+P    L  AL   MG AYP+L+ ++  IE+ L  
Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGATQPFFYKLTGALVELMGEAYPQLVSSRKQIEKVLLQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD+GL LL+  ++ L   EI  G+  F LYDT+G P+D+  DI   RGL  +
Sbjct: 361 EEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETVFTLYDTYGFPVDLTNDIARERGLT-L 418

Query: 414 DIISFNQALEEQRSRARAHS-LGL---GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           D   + +A+E QR RARA S  G+    +G T +         G T+F GYD + G +  
Sbjct: 419 DYEGYEKAMEAQRDRARAASKFGIDYNAAGITIE---------GKTEFTGYDHVDGHER- 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                                 ++ ++  GE    A +G +  VV ++TPFYAE+GGQ+G
Sbjct: 469 ----------------------IRTVLVNGE-ERNAEAGDECVVVLERTPFYAESGGQVG 505

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG     G R Q+TD +K+ +   +H   +  G L   + +   ID+  R +   NHSA
Sbjct: 506 DTGLLTWSGGRFQVTDTRKEGDN-HLHVGTLIEGELFPGLEVDARIDHARRERTKRNHSA 564

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG HV+Q GS + PD LRFD +H + +T  +L+ IE  VN+ I +N PV
Sbjct: 565 THLLHAALRNILGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERTVNEQILENTPV 624

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              I + + A   GA AL G KY D VRV+++  +    +S  LCGGTHV+ TG+I L  
Sbjct: 625 DIDITDMDTAKEKGAMALFGEKYGDVVRVLTMGTDK---YSVELCGGTHVARTGDIGLFR 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SES I +G+RRIEA+TG  A   +   +  L+  A  +K ++ +VV +V+++ +  R+
Sbjct: 682 ITSESGISSGVRRIEAVTGLGALEWVDETERTLRETARLVKGTRDSVVDKVKQVLDRNRQ 741

Query: 770 LQ--LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+  +   K KL  +   DL  S  ++A +  ++  +   D K L    D L+ K+  G+
Sbjct: 742 LEKDVDALKAKLASSAGTDLAGSAVEVAGLKVVASEMEGADRKALMETADQLKNKLGEGV 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L  + ++ K  ++  VT+   +R  A DL +  A ++  G GGGRP MAQ GG + ++
Sbjct: 802 VVLATV-EDGKVVLVAGVTKSATNRIKAGDLMKHLASLV-DGKGGGRPDMAQGGGNDPSR 859

Query: 885 ADQAIAGVASFLKK 898
             +A+AGV +++++
Sbjct: 860 LAEALAGVPAWVEQ 873


>gi|21242491|ref|NP_642073.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|24418694|sp|Q8PLQ0|SYA_XANAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21107940|gb|AAM36609.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 882

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDVIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLIGKAGSLTGVADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALSAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSVEVADTQKFAGQFHGHVGRISEGALALGDVLAGEIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL    I  A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S  K A V  V             L  +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|262279704|ref|ZP_06057489.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262260055|gb|EEY78788.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 883

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 9   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT +    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GGLPGS EE G+R+IEIWN VFMQF + N      LP  S+DTGMGLER++
Sbjct: 189 FFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTNDGVLHPLPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL  E
Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLVRE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R    ID
Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + S+ +  G TQF GY              
Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY-------------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                  I+ T G   I+ AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 465 -------IN-TTGQGQII-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSATHLLH
Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T ++
Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTTELL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY + VRV+++    D    S  LCGG HV  TG+I L  I SE
Sbjct: 635 DIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    LQ  
Sbjct: 695 GGVAAGVRRIEAVTGTKALDVVQKTDSDIQHINGLLKAQKDQTVERVQANVELVSALQ-- 752

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         +L      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 753 --KQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|289662681|ref|ZP_06484262.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669644|ref|ZP_06490719.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 882

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 540/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GYD             
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYDAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG   E A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPAERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL    I  A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAGAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDAVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASG-GKVALVAGVNGSPTGKVKAGELLGYIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|261820431|ref|YP_003258537.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261604444|gb|ACX86930.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 875

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/909 (43%), Positives = 553/909 (60%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC+
Sbjct: 124 PKEKLWVTVYATDDEAYNIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDIDLFK LI A  +  G     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIDVMGPAAAELKKQQSVVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F +TL+RGL LLD  + +L K + L+G+  F+LYDT+G P+D+  D+   RGL  
Sbjct: 362 MEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETVFRLYDTYGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+  QR RAR  S   G G        + E    T F GY+        ++ 
Sbjct: 420 VDEEGFESAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V++  +G    V+ ++TPFY E+GGQ+GD G
Sbjct: 468 AKVI-----------------ALYHNGNAVDQIAAGDDAVVILNETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+   + D QK  + I  H   + +G LR   S+   +D Q R ++ +NHSATHL
Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T 
Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRLVEDIVNAQIRRNLTVQTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH + TG+I L  I+S
Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHANRTGDIGLFQIIS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+ 
Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S    K  +VN +  ++++   VD K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +      
Sbjct: 805 -GTATEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDALALPG 862

Query: 888 AIAGVASFL 896
           A+A V S++
Sbjct: 863 ALASVESWV 871


>gi|322831421|ref|YP_004211448.1| alanyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166622|gb|ADW72321.1| alanyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 875

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/912 (43%), Positives = 558/912 (61%), Gaps = 60/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHNIVSSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRDYNRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGENWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EAF++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYETDDEAFEIWEKEVGVPKERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  V+Q   +NYDIDLF+ LI A  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ITAVMQHVNSNYDIDLFQKLIAAVAEVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAQDTFFYKLVAPLIEVMGPAATELKEQQAMVEQLLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L K + L+G++AF+LYDT G PLD+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDEELAAL-KGDTLDGEIAFRLYDTFGFPLDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRGSKFMKE 471
           +D   F +A++ QR RAR  S G  +      + S+    G TQF GY+ L R SK    
Sbjct: 420 VDEAGFEKAMDVQRRRARESS-GFSAD-----YNSMVRVDGVTQFSGYEHLQRHSK---- 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+   G+ V +  +G    VV D TPFY E+GGQ+GD 
Sbjct: 470 --------------------VVALFVDGQPVNDIQAGVNAIVVLDDTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          ++D QK  + I  H   +  G L    S+   +D   R ++ +NHSATH
Sbjct: 510 GILKTTTGVFSVSDTQKYGKAIG-HQGALSAGKLSIGDSVEAEVDVARRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGKHVAQKGSLVNDNYLRFDFSHFEAMKPEEIRQVEDLVNAQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ ++A   GA AL G KY D VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 TIMDLDEAKEKGAMALFGEKYEDSVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--- 768
           SES   AG+RRIE ITG+ A + L  Q + L+ +A  +K    ++  ++  + E  R   
Sbjct: 684 SESGTAAGVRRIEGITGENAINALHQQSDLLQDVAHLVKGDVNSITDKIRSLIERSRTLE 743

Query: 769 -KLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +LQ +  ++  Q +    S  K +  V  +      V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQVKGQQAAQESASLSSQAKEVKGVKLLVRQFDNVEPKMLRTMVDDLKNQLGSVIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  I+ + K S++  VT+DL DR  A +L A ++ +V  GG GGGRP MAQ+GG +    
Sbjct: 804 LATIA-DDKVSLIAGVTKDLTDRVKAGELIASVAQQV--GGKGGGRPDMAQAGGSDVQAL 860

Query: 886 DQAIAGVASFLK 897
             A+A V ++++
Sbjct: 861 PAALATVEAWVE 872


>gi|121998432|ref|YP_001003219.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|205830063|sp|A1WXK5|SYA_HALHL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121589837|gb|ABM62417.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 863

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/901 (43%), Positives = 549/901 (60%), Gaps = 53/901 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GHE++PSS L+P NDPTL+FTN+GMVPFK +F G+E+  YQ  T+ 
Sbjct: 4   AQLRAAFLDFFRERGHEVVPSSPLVPANDPTLLFTNAGMVPFKEVFLGREQRGYQRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+  +L   R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRYAWSFLTEVVELPPER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TVY++D+EA ++W +  G+   +  RI  +DNFWSM +TGPCGPCSE+F+D G  +P
Sbjct: 124 LWVTVYEDDDEAAQIWLEEIGVDPARFRRIGAHDNFWSMGDTGPCGPCSEVFYDHGPEVP 183

Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS EE G+RYIE+WNLVFMQ+++  +     LP  SIDTGMGLER+A VLQ   +N
Sbjct: 184 GGPPGSDEEDGDRYIEVWNLVFMQYDRDAEGNLNPLPSPSIDTGMGLERLAAVLQGVHDN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           ++ DLF  LI A+ ++ G+        + +V+ DH+R+ SFLI DG+LP+ EGRGYVLRR
Sbjct: 244 FETDLFTPLIDAAGEIAGVS--DRRKPSLKVVADHIRACSFLIVDGVLPSTEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  EP    L+  L   MG A+PEL   +  +E+ L  E++RF +TL+
Sbjct: 302 IIRRAVRHGYQLGIDEPFFYRLVDPLDAVMGEAFPELRDRREFVEKILFQEEKRFRETLE 361

Query: 364 RGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
            GL LLD  L   G D  +++G+V FKLYDTHG P+D+  DI   R L  +D   F   +
Sbjct: 362 DGLALLDEYLG--GNDSGVIDGEVVFKLYDTHGFPVDLTADIARERNLE-VDYQGFEARM 418

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQR RARA S   G    E +        G ++F GY+ L       ED          
Sbjct: 419 AEQRERARAASR-FGGAREEVV------DAGESRFTGYETL-------ED---------- 454

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                V S++  + Q G  V+    G++  VV D+TPFYAE+GGQ+GD G  + +G+R +
Sbjct: 455 -----VGSVI-GLYQDGRSVQRLQPGEEGMVVLDRTPFYAESGGQVGDRGEILANGLRFR 508

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D  K+ E    H   +E G L     +   +D   R     NHSATHLLH AL  ILG
Sbjct: 509 VADTVKQGEA-HGHLGRLESGELGVGDQVTARVDRGTREATVRNHSATHLLHAALREILG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS + PD LRFD +H +  +  +L+ IE  VN  I  N PV    M  E+A+  
Sbjct: 568 DHVQQKGSLVAPDRLRFDFSHYEAPSREDLERIEARVNQEILTNHPVEAAHMAYEEAVQV 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRV+S+     G +S  LCGGTH + TG+I L  I+ E+ +  G+RR
Sbjct: 628 GAMALFGEKYGDTVRVISL-----GDYSQELCGGTHAARTGDIGLFKIIDETGVAGGVRR 682

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEAITG+RA   +   + +L  LA  L+V   N+V +VE++ E  R+ +    + K +L 
Sbjct: 683 IEAITGERAIGWVQEAEGRLNRLADLLRVGPDNLVMKVEQLSERTREQEKEIERLKQKLA 742

Query: 783 VED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            +          ++A V F++  + E   K L+  +D L+ ++ SG+I+L  +  E K  
Sbjct: 743 TQAGRSLLDDAGEVAGVRFLATCV-EGGGKGLRDTLDQLKNQLGSGVIVLAAVQGE-KVQ 800

Query: 838 VLIVVTEDLLDRFNAVDLA-RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++  VT+DL DR  A DL   ++A+V  GG GGGR   AQ+GG + +  + A+A V +++
Sbjct: 801 LVAGVTKDLTDRLAAGDLVNHVAAQV--GGRGGGRADFAQAGGKDPSHVNDALASVEAWI 858

Query: 897 K 897
           K
Sbjct: 859 K 859


>gi|224825848|ref|ZP_03698952.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224602072|gb|EEG08251.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 877

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/912 (43%), Positives = 541/912 (59%), Gaps = 60/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL+FF   GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK  Y   TT
Sbjct: 3   TSEIRQKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E    L 
Sbjct: 63  SQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWEFLTGEQWLALP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY  D+EAF +W K  GL  +KI+RI  N       DNFW+M +TGPCGPC+E
Sbjct: 123 KEKLMVTVYASDDEAFDIWHKTVGLPVEKIVRIGDNKGAAYASDNFWTMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE + GG PGS  E+G+R++EIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 183 IFYDHGEEVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDETGTLHPLPKPSVDTGMGLERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +TVLQ   +NY+ D    L++A+ + TG++Y   N+ + +VI DH+R+ SF+IADGILP+
Sbjct: 243 STVLQHVKSNYETDGLACLVRAAARETGVEYS-QNVPSLKVIADHIRACSFMIADGILPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI RRA+ +   LG        ++  L  EMG AYPEL Q +  IE+ LR+
Sbjct: 302 NEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVEEMGGAYPELRQQQAHIEDNLRA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ L+D  L   G    ++GD  FKLYDT G P+D+  DI   R +  +
Sbjct: 362 EEVRFAETLEHGMALVDAALQ--GGKIRMDGDTIFKLYDTFGFPVDLTADICRERNIE-V 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+  QR RARA S       + K+  +L+     T+F GY+            
Sbjct: 419 DMEGFEHAMNAQRERARAAS-------SFKMTGNLEYAGADTRFHGYE------------ 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG- 532
                      T  V + V A+ +    VE+   G++  VV D T FYAE GGQ+GD G 
Sbjct: 460 -----------TASVDAKVLALFKGNTPVEQLAEGEEGVVVLDDTAFYAEGGGQVGDCGE 508

Query: 533 --CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
              + G G    +TD QK     F H   V RG L    ++  TID   R   + NHSAT
Sbjct: 509 ISVSGGVGALFDVTDTQKIKAATFGHSGRVVRGALHVGDTVQATIDLHKRLATARNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHV+Q GS +  +  RFD  H +P++ A++  IE  VN I+  N+ V 
Sbjct: 569 HLLHAALRHVLGSHVAQKGSLVNAERTRFDFAHGEPVSVAQIAEIERVVNRIVLHNVEVS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +M  +DAI +GA AL G KY D VRV+ +     G  S+ LCGGTHV  TG+I    I
Sbjct: 629 ANVMAYDDAIRAGAIALFGEKYGDEVRVLKM-----GEFSTELCGGTHVKRTGDIGFFKI 683

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRK 769
           V+E  + AG+RRIEA+TG+ A ++   Q+  +K  A  LK  +   VVG++  + +  + 
Sbjct: 684 VAEGGVAAGVRRIEAVTGEGAVAYAQQQESLVKEAAGALKAQTSEEVVGKIGSLQDNLKA 743

Query: 770 L--QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L   K KL  +  D    S  +I  +  ++  +   D+  L+  +D L+ K++S  
Sbjct: 744 LEKELSRLKAKLAASAGDTLADSAVEIGGIKVLAAELEGADNTALRETLDKLKDKLKSAA 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L     + K S++  VT DL  +  A +L    A+ + GG GGGRP MAQ+GG    K
Sbjct: 804 IVLAA-KGDGKVSLVAGVTADLTGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPEK 861

Query: 885 ADQAIAGVASFL 896
             +A+AGV +++
Sbjct: 862 LAEALAGVNAWV 873


>gi|298529109|ref|ZP_07016512.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510545|gb|EFI34448.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 882

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/901 (43%), Positives = 557/901 (61%), Gaps = 43/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FFQ N H ++PSSSLIP +DP+L+FTN+GMV FK +F GQEK  Y  
Sbjct: 1   MLSAAEIREKFLKFFQDNHHTVVPSSSLIPADDPSLLFTNAGMVQFKKVFLGQEKRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKERAI LAW  LT+E  L
Sbjct: 61  AVTSQKCLRVGGKHNDLENVGRTRRHHTFFEMLGNFSFGDYFKERAIDLAWTFLTRELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L+IT++ +D++A  LW++++G+S D+I R+   DNFWSM +TGPCGPCSE+ +DQG
Sbjct: 121 ERDKLFITIFADDDDAHGLWQEVAGVSPDRIYRLGEKDNFWSMGDTGPCGPCSEVLYDQG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G   + +RY+EIWNLVFMQ+++  +     LP+ SIDTGMGLER++ V 
Sbjct: 181 EGMSCGPDCAIGVC-DCDRYLEIWNLVFMQYDRDQEGNLNPLPRPSIDTGMGLERISAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NYD DL K LI  + + +G +Y  + ++ V   VI DH RSS+F+IADGILP+NE
Sbjct: 240 QGVYSNYDTDLLKSLITDTARKSGKEYGRDRDDDVALAVIADHARSSAFMIADGILPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRR++RRA  + R LG  EP +   +  +  +M  AYPEL + +  +   +R E+
Sbjct: 300 GRGYILRRLIRRAFRFGRHLGLAEPFLHQTVQVVVQDMSMAYPELEKGRDFMVRVIRQEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL++GLVLL+  L  L   ++  + G+ AFKLYDT+G PLDI+ DI   RG + +
Sbjct: 360 ERFSETLEKGLVLLEEELKKLESLQVNTVPGETAFKLYDTYGFPLDIVNDIAEKRGFS-V 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +++QR RARA   G G     ++  SL+ +   T F+GYD L+         
Sbjct: 419 DEAGFQECMQDQRQRARAAWKGSGDAGLGEVLSSLEGELPQTSFVGYDRLQDQ------- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            IV  + Q+G   E    G+K  +V  +TPFYAE+GGQ+GD G 
Sbjct: 472 ---------------GEIVLLVDQEGRSREALSQGEKGWLVASRTPFYAESGGQVGDRGR 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 +  + D Q +A G+  H   V RG +     + LT+D   R   + NH+ATHLL
Sbjct: 517 IQAARGQAMVRDTQDQAAGVVAHEVEVSRGEVHKGDVVDLTVDEGRRVATARNHTATHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD TH + +T+ E++ IE+ VN  I  +  V  R+
Sbjct: 577 HLALRRVLGEHVHQAGSLVDEKRLRFDFTHIQALTAEEMERIEEEVNAAILSDYQVQVRV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+   A+  GA AL G KY D+VRVVSV     G  S  LCGGTH+ ST +     +VSE
Sbjct: 637 MDYSQAVQEGAIALFGEKYTDKVRVVSV-----GNISMELCGGTHLDSTAQAGTFCLVSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG  A ++  G  + + SL   LKV+   +V +V+ + E+ R+L   
Sbjct: 692 SAVGSGMRRIEALTGWDALNYWRGMRKSVTSLQETLKVAPDQLVDKVQALQEQMRELARE 751

Query: 774 HAKRKLQLNVE---DLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +     +++ E   D++  K  +  V  ++  +   D + L+S+MD ++ K+ +G+ ML 
Sbjct: 752 NKALSQKISAEQGRDIASEKKMVGRVPLVARKVDVGDVEGLRSLMDDIRSKLDTGVAML- 810

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G   + K ++L+ V++DL + F A +L +  AK +  GGGGGRP +AQ+GG +    D+A
Sbjct: 811 GTRNKGKPTLLLYVSKDLHENFTAPELIKEVAKEI-KGGGGGRPDLAQAGGSDAQGLDRA 869

Query: 889 I 889
           I
Sbjct: 870 I 870


>gi|189183879|ref|YP_001937664.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|205830168|sp|B3CST3|SYA_ORITI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189180650|dbj|BAG40430.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/890 (44%), Positives = 540/890 (60%), Gaps = 40/890 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N++ IRTTF+EFF+K GH    SSSL+P NDP+L F N+G+V FK+     E   Y  V 
Sbjct: 6   NINQIRTTFIEFFKKYGHHHASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121
           T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG    K   +QL W+ LTKE  +D
Sbjct: 66  TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWNFLTKELFID 125

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL +TVY  D E  KLW+ I+GL   +IIRI T+DNFWSM   GPCGPC+EIF+D G+
Sbjct: 126 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 185

Query: 182 CIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGGLPG+ +E G RY+EIWN+VFMQ+EQ N+  R  L K  IDTG GLER+ATVLQ  
Sbjct: 186 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 245

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLFK+LI   E +T +K  G    +HR+I DHLR+S+FLIADG++P+N+GRGYV
Sbjct: 246 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 305

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM     LG  EP+M  L+  L  EMG  Y EL   + LI   L++E+E+F  
Sbjct: 306 LRRIMRRAMNQIHQLGCKEPVMHLLVQGLINEMGDFYKELRVRQELITYLLKNEEEKFKT 365

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL LL+    +L     L+G +AFKLYDT+G P D+ QDIL  R ++ I+   F+Q
Sbjct: 366 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRSIS-INKTEFDQ 424

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RAR    G GS   + +W  LKE++ AT+F+GY               LCQ  
Sbjct: 425 NMLEQQNRARQLWKGQGSNKEQLLWEKLKEEFRATEFVGYS--------------LCQ-- 468

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534
                     IV +++Q  + VE     Q      +  ++ +QTPFY ++GGQ+GD G  
Sbjct: 469 -------AEGIVVSLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQIGDIGII 521

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   + +TD  K      VH   +  G +     + + ID Q R QL I+HSATH+LH
Sbjct: 522 KNNECTIHVTDTIKLFGCTHVHICKIVSGKINLNAVVHMAIDKQYRTQLQIHHSATHILH 581

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG+H+ Q GS +  D LRFDV+H   I+   L  IE+ VN+II  N  V  RIM
Sbjct: 582 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISKDLLTKIENRVNEIILNNTAVKLRIM 641

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             + AIA GA AL   KY D VR +S+ E  D   +S  LCGGTHV  TG+I    I+SE
Sbjct: 642 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 701

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QL 772
           S+I AG+RRIEAI G+          E L  +A    V++  ++ +++ I EE   L + 
Sbjct: 702 SAIAAGVRRIEAIAGKHVIKQARQNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 761

Query: 773 IHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +H  +  QL + +     +AD    +  +   I + D + ++  +    K IQ+ ++M+V
Sbjct: 762 LHQLKYNQLILCEKDIQNMADNIGKIKLVYKNIEDYDLQIVRKAVSNTTKNIQN-LVMVV 820

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             + +KK++++I V++++ ++  A +L +     +GG GGG    +AQ G
Sbjct: 821 ISNNDKKSTIIIGVSDNITNKIQANNLVKEIINYIGGSGGGSAT-LAQIG 869


>gi|2500961|sp|Q56273|SYA_THIFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1263913|emb|CAA64818.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans]
          Length = 877

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/887 (44%), Positives = 532/887 (59%), Gaps = 39/887 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
              +IR  FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E   Y+   
Sbjct: 2   QAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L  
Sbjct: 62  SSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+ITVY+ED+EA  +W    G+   ++ R    DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 122 EKLWITVYEEDDEAADIWMNEIGVDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGPH 181

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           IPGG PGS EE G+RYIEIWNLVFMQF++ +      LPK S+DTGMGLER+A VLQ   
Sbjct: 182 IPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGVH 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NNYD DLFK LI A+  ++G  Y  +    ++ RV+ DH+R+ SFLI DG+LPANEGRGY
Sbjct: 242 NNYDTDLFKPLIAAAAAISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ + R LG        L+  L  EMGSA+PEL +A+  +E  L  E+ RF 
Sbjct: 302 VLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRFR 361

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  ++ L     + G++ F+L DT G P+D+  DI   R L  +D+  + 
Sbjct: 362 ETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGYE 420

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ ++RS       G G   TE+++  L  +   T+F GY                   
Sbjct: 421 AAMADERSPLPCRLGGSGEVKTERVYHDLAMRLPVTEFTGYS------------------ 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                T      V A+++ GE V    +G    V+ D+TPFY E+GGQ GD G    +  
Sbjct: 463 -----TCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSNDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD QK    + VH   VE G L+    +V ++D   RR  + +HSATHLLH AL  
Sbjct: 518 LFAVTDTQKPMGHLHVHLGRVESGRLQIGDMVVASVDEVARRATAAHHSATHLLHAALRN 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHV Q GS + P+ LRFD +H +P+T+A+L+ IE  VN  I  N+   TRI+   +A
Sbjct: 578 ILGSHVQQKGSLVNPERLRFDFSHPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAEA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA AL G KY D VRVV +     G  S  LCGGTHV + G+I +  I+SES + AG
Sbjct: 638 QALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAAG 692

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           IRRIEA+TG  A   +   +E+L++ A  LKV+   +  R+ +  E  R+L  +L   KR
Sbjct: 693 IRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVKR 752

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              +        +  DV  +  +I  +   D K L+  +D L+ ++  G+I+L G+ +EK
Sbjct: 753 DEAVRAGAGLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVEREK 812

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            A ++  V + L  R +A +L    A+ L GG GGGRP +AQ+G  N
Sbjct: 813 VA-LIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGN 857


>gi|332140622|ref|YP_004426360.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550644|gb|AEA97362.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 865

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/901 (44%), Positives = 551/901 (61%), Gaps = 48/901 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F+ +F+ +GH+ + SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   STADLRNKFINYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDTFLGTEKRSYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+ LT E  L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEAIEFAWNFLTSEVGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   G+  +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG+ EE G+R+IEIWNLVFMQF +Q       LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF++LI+++  + G +   N  +  RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDLFQNLIKSAASIVGTEDLENKSL--RVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ +L  EMG AYPEL+    +IE+ LR E+E+F KT
Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLANEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG+ +L+  L+ L  D +  GDV FKLYDT+G P D+  D+     L  ID   F  A
Sbjct: 362 LARGMAMLNDTLASLEGDTV-PGDVVFKLYDTYGFPTDLTNDVAREHELK-IDEEGFEAA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ QR+RA+  S   G+    K+          T F GY  + G   + E          
Sbjct: 420 MQAQRARAQQAS-NFGADYNSKLAID-----HTTSFTGYTDVEGQANVVE---------- 463

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                        ++     VE+   GQ+  VV D TPFYAE+GGQ GD G         
Sbjct: 464 -------------LIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD QK     F H  I +  + + + +    ID  NR  +  NHSATHLLH AL  IL
Sbjct: 511 IVTDTQKMGNA-FAHKGIAKGSVSKGDTATA-AIDSANREAIKKNHSATHLLHAALREIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +    +RFD +H + +T+ +L  IE  VN  I  N  + T +M+ E+A A
Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTTEQLAEIERRVNQEIRANHSLATELMDLEEAKA 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY+++VRVV++     G  S  LCGGTHV+ TG+I L  I SE+ I +G+R
Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVARTGDIGLFKITSEAGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKL 779
           RIEA+TG++A   +  Q   L SL+S LK    NV+ RV  +  + ++L+  L  AK+KL
Sbjct: 684 RIEAVTGEQAIEVVQTQQATLSSLSSLLKTDSQNVLERVVSLQNQTKELEKALNSAKQKL 743

Query: 780 --QLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             Q   + LS   +I  V  +   +  V++K L+S+MD ++ +I  GI++L G++   K 
Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANNAKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++  VT++L D+  A +L    A  + GG GGGRP MAQ+GG       QA+  V  +L
Sbjct: 803 NLIAGVTKNLTDKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDKPENLGQALDSVNVWL 861

Query: 897 K 897
           +
Sbjct: 862 Q 862


>gi|294626627|ref|ZP_06705224.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665630|ref|ZP_06730907.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599047|gb|EFF43187.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292604576|gb|EFF47950.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 882

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGVDAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL    I  A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S  K A V  V             L  +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|325924500|ref|ZP_08186019.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
 gi|325544995|gb|EGD16330.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
          Length = 882

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAISWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIQESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLIPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGVADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQATVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     E++ G  AF+L+DT+G P+D+  DI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASR--AQEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMSPTVFLGYEAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPVERADAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + I D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTGVSIDIADTQKFAGQFHGHVGRITEGALALGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL  S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S  K A V  V             L  +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASAGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 DGVHSWVKQ 879


>gi|329902133|ref|ZP_08273037.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548856|gb|EGF33484.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 869

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/905 (42%), Positives = 542/905 (59%), Gaps = 56/905 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++ SS LIP NDPT++ TNSGMV FK++F G ++  Y   T+V
Sbjct: 4   TEIRAKFLKFFESKGHTIVRSSPLIPGNDPTMLLTNSGMVQFKDVFLGTDQRAYSRATSV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + L + +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTNVYLLPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LWVTVYHEDDEAYAIWANEIGIPTERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS+EE G+R+IEIWNLVFMQF +  +     LPK  +DTGMG+ER+A +
Sbjct: 184 DHGPEIWGGPPGSAEEDGDRFIEIWNLVFMQFNRDEQGNMPRLPKPCVDTGMGMERLAAI 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ + TG    G+N +  +VI DH+R+ +FLI DGI+PA+EG
Sbjct: 244 LQHVHSNYEIDLFQNLIKAAARETGTTDLGDNSL--KVIADHIRACAFLIVDGIIPASEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
            GYVLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL QA + +E+ LR E+E
Sbjct: 302 HGYVLRRIIRRALRHGHKLGQAKPFFYLLVKDLVIEMGEAYPELTQAAVRVEQVLRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG+TL+ G+ +L+  L  L     L+G  AF LYDT G PLD+  DI C      +D  
Sbjct: 362 RFGETLEHGMKILEAAL--LVTPTQLDGQTAFTLYDTFGFPLDLTADI-CRERKVELDEA 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN A+E+QR+ ARA           K+  +++     T+F+GYD L             
Sbjct: 419 GFNVAMEQQRTTARAAG-------KFKMAAAVEYSGDKTRFVGYDALE------------ 459

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       S+ V A+   G  V    +GQ+  VV D TPFYAE+GGQ+GDTG   G
Sbjct: 460 -----------QSAGVIALYVNGTAVPRMTAGQEGIVVLDVTPFYAESGGQVGDTGMLTG 508

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             ++  + D  +    +F HH  +  G L     +   +D   R +   NHSATHL+H A
Sbjct: 509 AAVQFHVADTLRIQSEVFGHHGTLAGGTLSVGDKVAANVDPVARGRTIRNHSATHLMHKA 568

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV+Q GS +  D  RFD +H+ P+T+ E++ +E  VN  I  N+    R+M  
Sbjct: 569 LREVLGAHVAQKGSLVDTDKTRFDFSHNGPLTADEIRQVELIVNREILANVATEARVMPY 628

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA+  GA AL G KY D VRV+ +        S  LCGG HV  TG+I L  I +ES +
Sbjct: 629 DDAVKYGAMALFGEKYGDEVRVLGIG------SSKELCGGVHVDRTGDIGLFKITAESGV 682

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AGIRR+EA+TG+ A + +     +++  A+ LKV    +  R+ ++ ++ R L+  +  
Sbjct: 683 AAGIRRVEAVTGEGALALVQALSRQMQDAAAILKVQPDELSQRIGQVQDQVRSLEKDVSA 742

Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  N  D    +  D   +  ++ ++   D   L+  MD L+ K+++  I+L  ++
Sbjct: 743 LKSRLAANQGDELLGQAVDIKGIKVLAAVLLGADVAALRVTMDKLKDKLKTAAIVLAAVN 802

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K S++  VT D   R  A +L    A  + GG GGGRP MAQ+GG + +    A+ G
Sbjct: 803 -DGKVSLIAGVTADATSRIKAGELVNFVALQV-GGKGGGRPDMAQAGGTDPSGLAAALLG 860

Query: 892 VASFL 896
           V  ++
Sbjct: 861 VPGWV 865


>gi|167570231|ref|ZP_02363105.1| alanyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 874

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/910 (42%), Positives = 537/910 (59%), Gaps = 55/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   TT
Sbjct: 3   AAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L   
Sbjct: 63  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPAD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L++TVY +D+EA+ +W K  G+ A +IIRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ   +NY+IDLF++LI+A+ + TG+    NN +  +VI DH+R+ SFLI DG++P NE
Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARETGIGDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A   + + LR E+
Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T++ G+ +L+  L  L     + L+G++AFKL+DT+G PLD+  D+   RG+  +
Sbjct: 361 ERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F+ A+  QR +ARA           K    L      T F GY+     +   +D 
Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLDYSGAKTTFHGYE-----EIAFDDA 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KVV-----------------ALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATHL+
Sbjct: 511 LANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R+
Sbjct: 571 HKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRV 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A+  GA AL   KY D VRV+ + +      S  LCGGTHV  TG+I    IV+E
Sbjct: 631 MPYDEAVKGGAMALFDEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  +
Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLEKE 744

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D   L   ++  V+ ++  +   D+K L+  +D L+ K+++  I+L 
Sbjct: 745 LAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 AVDG-GKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862

Query: 889 IAGVASFLKK 898
           +AGV  ++++
Sbjct: 863 LAGVKGWVEE 872


>gi|325121489|gb|ADY81012.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 883

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 9   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GGLPGS EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 189 FFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ +G   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDQGQPSL--RVVADHARSCCFLIADGVNPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL  E
Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATLIRE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R    ID
Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + ++ +  G TQF GY              
Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                  I+ T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 465 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSATHLLH
Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T ++
Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTTELL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 635 DIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    LQ  
Sbjct: 695 GGVAAGVRRIEAVTGTKALDVVQKTDADIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         +L      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 753 --KQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|58582562|ref|YP_201578.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624448|ref|YP_451820.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575923|ref|YP_001912852.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|75434894|sp|Q5GYM8|SYA_XANOR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123521587|sp|Q2P1N1|SYA_XANOM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830287|sp|B2SUD0|SYA_XANOP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58427156|gb|AAW76193.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368388|dbj|BAE69546.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520375|gb|ACD58320.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 882

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGRGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPT 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFECAMERQRETARAAG-KFGGGVA--LPADLVASMSPTVFLGYEAYDADALR----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++LQ  L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLQREL 752

Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL    I  A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S  K A V  V             L+ +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASGGKVALVSGVNGSPTGKVKAGELLSNIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|21231177|ref|NP_637094.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|24418692|sp|Q8P9X0|SYA_XANCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21112818|gb|AAM41018.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 882

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/909 (43%), Positives = 547/909 (60%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVALPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+         +D  
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMAPTVFLGYE--------AQDAD 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            L               V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 472 ALK--------------VVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   +V +V  + +  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL  S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +  K A V  V             L  +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 AAGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|188991930|ref|YP_001903940.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|205830286|sp|B0RTY1|SYA_XANCB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167733690|emb|CAP51895.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 882

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/909 (43%), Positives = 546/909 (60%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+         +D  
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMAPTVFLGYE--------AQDAD 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            L               V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 472 ALK--------------VVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  I +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDISIEVADTQKFAGQFHGHVGRIAEGTLKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   AS    +   +V +V  + +  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAASLFGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL  S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +  K A V  V             L  +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 AAGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|262375452|ref|ZP_06068685.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309706|gb|EEY90836.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 892

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/928 (43%), Positives = 532/928 (57%), Gaps = 78/928 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT E    L +
Sbjct: 64  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNEEWLGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 DKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD GE I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGEHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH----RVIVDHLRSS 282
            VLQ   +NY+IDLF+HL++A+ ++ G+          E    V +    +V+ DH RS 
Sbjct: 244 AVLQHVNSNYEIDLFQHLLKAAAEIIGLNTTALEAEAAEKGTPVQYPASLKVVADHARSC 303

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           SFLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL  
Sbjct: 304 SFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLKPLIEVMGDAYPELAA 363

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            +  IE  L  E+E+F KTL++GL LL+G L+ L K  ++ G+V FKLYDT+G P D+  
Sbjct: 364 QQARIEAQLLKEEEQFAKTLEQGLKLLEGELAQL-KGSVIPGEVVFKLYDTYGFPTDLTA 422

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           DI   R L  ID   F   +  QR RAR       +G     + S+ +  G TQF GY  
Sbjct: 423 DIARERDLT-IDEAGFETEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDGY-- 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                               D T G   I+ AI + GE V+E   G +  +V +QTPFYA
Sbjct: 474 --------------------DATAGEGQII-AIYKDGEQVDEVFEGDEALIVLNQTPFYA 512

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GDTG    D    ++ D  KK+ G FVH  IV  G L+   ++  T+    R  
Sbjct: 513 ESGGQIGDTGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTMGNLKVTQNVEATVKADIRAA 571

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ IE  VN  
Sbjct: 572 TARNHSATHLLHAALRQILGSHVQQKGSLVASDVLRFDFANDQPVSFEQLQEIERLVNAE 631

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGT 697
           +  N  V T +++ E A A GA  L G KY D VRV+S+    G V      S  LCGG 
Sbjct: 632 VIANTAVSTELLDIESAKAKGAMMLFGEKYGDEVRVLSM----GSVIEEKNFSIELCGGI 687

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  TG+I L  I SE  + AG+RRIEA+TG +A       D  +  +   LK  +   +
Sbjct: 688 HVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAVEVAQKADRDINMINGLLKAQKDQTL 747

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---------CHKIADVNFMSHIISEVDSKE 808
            +VE + +    LQ    K+  QLN +  S            IA    +   +  +D+K 
Sbjct: 748 EKVEALVDTASSLQ----KQIEQLNQKLASLQAGELLSQVQSIAGRATLITTVENMDAKA 803

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+++ D ++ K+++ +I+L G+  + K S++  V +D      A D+ +  A  L GG G
Sbjct: 804 LRNLHDGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLANEL-GGKG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG+P +AQ G P   K    +A + ++L
Sbjct: 862 GGKPDLAQGGAPLNEKFAPVMADLTAWL 889


>gi|85058516|ref|YP_454218.1| alanyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123520018|sp|Q2NVL2|SYA_SODGM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84779036|dbj|BAE73813.1| alanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 875

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/910 (43%), Positives = 558/910 (61%), Gaps = 58/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y+  T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDNRFYRRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTGEHWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+ A++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYATDDEAYNIWASEVGIPAERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS EE G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTLLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLFK LI A+ + TG     +  +  RVI DH+RS  FL++DG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFKTLIAAAAEATGASDPDSKSL--RVIADHIRSCVFLVSDGVVP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG ++     L+  L   MGSA  +L   + ++E+ LR
Sbjct: 302 SNEGRGYVLRRIIRRAIRHGNMLGASDTFFYKLVAPLIDVMGSAASQLQPQQAMVEQVLR 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G  LD+  D+   R L  
Sbjct: 362 AEEEQFARTLERGLTLLDDELAKLTGD-TLDGETAFRLYDTYGFSLDLTADVCRERNLR- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR RAR  S G G+      + SL      T+F GY+ L         
Sbjct: 420 VDEAGFERAMEAQRKRARESS-GFGAD-----YNSLLRVDETTRFFGYEHLEH------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+ + G++V     G++  VV D+TPFY E+GGQ+GD G
Sbjct: 467 ----------------QGRVTALFRDGQLVGVIRQGEEAVVVLDETPFYGESGGQVGDRG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK  +  F H   +  G L+    +   +D   R ++ +NHSATHL
Sbjct: 511 VLKAASGVFEVADTQKYGKA-FGHQGKLSYGELKLGAQVTAQVDSARRERIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD +H++ +   +++ +E+ VN+ I  NLP+ T 
Sbjct: 570 LHAALRQVLGDHVGQKGSLVNDHYLRFDFSHNEAMKPEQIRRVEEIVNEQIRCNLPIQTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  EDA   GA AL G KY  +VRV+S+     G  S+ LCGGTH S TG+I L  I++
Sbjct: 630 IMALEDARNKGAMALFGEKYEAQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIA 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + L  Q + ++ +A  +K     +V +V  + E  R+L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGEEALASLHQQSDLVQHIAQLVKGDSQTLVDKVRALQERSRQLEK 744

Query: 773 IHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827
              + K Q   ++ +     + D+N +  ++ ++DS E   L++++D L+ ++ S +I+L
Sbjct: 745 DLQQLKNQQAAQESASLGRNVRDINGVKVLVRQLDSAEPKMLRTMVDDLKNQLGSAVIIL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ E K S++  VT+DL DR  A D+   L+ +V  GG GGGRP +AQ+GG +     
Sbjct: 805 ATVA-EGKVSLIAGVTKDLTDRVKAGDIVGHLAQQV--GGKGGGRPDLAQAGGSDIAALP 861

Query: 887 QAIAGVASFL 896
            A+A V + L
Sbjct: 862 AALASVDAML 871


>gi|83719349|ref|YP_443176.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620352|ref|ZP_02388983.1| alanyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|257139409|ref|ZP_05587671.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|123536505|sp|Q2SV73|SYA_BURTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83653174|gb|ABC37237.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 874

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/911 (42%), Positives = 544/911 (59%), Gaps = 55/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   T
Sbjct: 2   KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L  
Sbjct: 62  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 182 FYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI+AS + TG+    NN +  +VI DH+R+ SFLI DG++P N
Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR E
Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQE 359

Query: 355 DERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+           + L+G++AFKL+DT+G PLD+  D+   RG+  
Sbjct: 360 EERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G+L+   ++   ID   R + + NHSATHL
Sbjct: 510 VLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRARTARNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + R
Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ + +      S  LCGGTHV  TG+I L  IV+
Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L  
Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLEK 743

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL  +  D    +   +  V+ ++  +   D+K L+  +D L+ K++S  I+L
Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        
Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861

Query: 888 AIAGVASFLKK 898
           A+AGV  ++++
Sbjct: 862 ALAGVKGWVEE 872


>gi|170717275|ref|YP_001784390.1| alanyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|205830062|sp|B0UTE1|SYA_HAES2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168825404|gb|ACA30775.1| alanyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 874

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/914 (42%), Positives = 547/914 (59%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y  
Sbjct: 1   MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT     
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE + GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NYDID+F+ LI    ++TG K   N  +  RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKDLTNKSL--RVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M +A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L ++ KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDEALINV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F + +E QR RA+A S  G+      ++        G T F GY         
Sbjct: 418 R-IDEEGFEREMEVQRLRAQAASRFGVDYNNVIRV-------EGTTTFEGYTEAE----- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+  +G+ VE   +GQ   V+ D TPFYAE+GGQ+G
Sbjct: 465 ------------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D GC I   +R  + D QK  + +F H   + +G L    ++   +D ++R + S+NHSA
Sbjct: 507 DRGCLIATNMRFDVKDTQKYGQ-VFGHIGTLIQGTLNVGQTINAVVDTEHRIKTSLNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LGSHV+Q GS ++   LRFD    + I+  +L  IE  VN  I  N  V
Sbjct: 566 THLLHAALRQVLGSHVAQKGSLVSDTILRFDFAQPEAISQEQLFEIECLVNQHIRANHLV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           VT +M  ++A A GA AL G KY D VRVV +     G  S  LCGG HV  TGEI L  
Sbjct: 626 VTEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IVS S+I AG+RR+EA+TG+ A + L  Q   L   A  LK    ++V +++++ ++ +K
Sbjct: 681 IVSGSAIAAGVRRVEAVTGEGAINWLQQQQVLLMQSADLLKSDANSLVEKIQQLQDKAKK 740

Query: 770 ----LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               LQ +  K  ++   +   S  +I  V+ +   +  +D K L+ ++D L+ ++ S +
Sbjct: 741 TEKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I  V    E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG     
Sbjct: 801 IAFV-TKNEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858

Query: 885 ADQAIAGVASFLKK 898
             +A+     +L K
Sbjct: 859 ISKALTVCNEWLHK 872


>gi|190573725|ref|YP_001971570.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|205830222|sp|B2FL33|SYA_STRMK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|190011647|emb|CAQ45266.1| putative alanyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 882

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/899 (43%), Positives = 552/899 (61%), Gaps = 61/899 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG     N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAVDTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGK-ASNGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA     G G T  +   L      T F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAGK-FGGGVT--LPAELVATLSPTLFLGYDRLQ---------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +G++  V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 471 ----------ADGLT--VLALLKDGRPVQSADAGDAVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H   +  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVDDTQKFAGQFHGHVGTLSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGSHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLE--- 750

Query: 775 AKRKLQ--------LNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             R+L+            DLS    ++A V  ++  +   D+K L+  MD L++++   +
Sbjct: 751 --RELEAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAV 808

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I+L G +++ KA+++  V    + +  A + L+ +++++  GG GGGRP +AQ GG +G
Sbjct: 809 IVLAG-AQDGKAALVAGVNGSAMGKVKAGELLSHIASQI--GGKGGGRPDLAQGGGEDG 864


>gi|148653409|ref|YP_001280502.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|205830185|sp|A5WFW1|SYA_PSYWF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148572493|gb|ABQ94552.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 903

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/905 (42%), Positives = 545/905 (60%), Gaps = 62/905 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  F++FF    H  +PSSSL+P NDPTL+FTN+GM  FK+ F G +K  Y    T
Sbjct: 20  TADVRKAFIDFFVSKQHTHVPSSSLVPYNDPTLLFTNAGMNQFKDCFLGIDKRDYTRAVT 79

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT +    LD
Sbjct: 80  SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKSAIAYAWEFLTSKQWLGLD 139

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +LY+T+Y+ D+EAF +W +  GL+A++IIRI  N       DNFW+M +TGPCGPCSE
Sbjct: 140 ADKLYVTIYESDDEAFDIWHQDIGLAAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCSE 199

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D GE + GGLPG+ EE G+RYIE+WN VFMQF +Q       LP  S+DTGMGLER+
Sbjct: 200 VFYDHGEHVEGGLPGTPEEDGDRYIEVWNCVFMQFNRQPDGTMEPLPAPSVDTGMGLERI 259

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + +LQ   +NY+IDLF +LI ++  + G+K   +N  + +V+ DH+R+ SFLIADG+LP+
Sbjct: 260 SAILQGVHSNYEIDLFVNLINSAADIIGIK--NDNQASLKVVADHIRAVSFLIADGVLPS 317

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     ++  L  EMG AYP+L++ +  IE+ +  
Sbjct: 318 NEGRGYVLRRIIRRAVRHGNKLGAEDSFFYKMVAPLVKEMGDAYPQLVEKQAFIEKAIEK 377

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ +F KTL +GL LLD  L  L   ++L+G+ AFKLYDT+G P+D+  DI   RG+ GI
Sbjct: 378 EEVQFAKTLAQGLRLLDSELESLKSGDVLSGEAAFKLYDTYGFPVDLTADITRERGI-GI 436

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F++ +  QR RAR       +G  +  + +  +    T+F+GY+ L        D 
Sbjct: 437 DEAGFDEQMNIQRQRAR------DAGKFDVDYSAAIKVETPTEFVGYEQL--------DE 482

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K +               +  + Q G+ VE    G +  +V D+TPFYAE GGQ+G+ G 
Sbjct: 483 KEVN--------------IIGLYQDGKEVEVLNEGDEGVIVLDRTPFYAEGGGQVGEMGE 528

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + D +K  +  F+HH +V  G L+   +    +    R   + NHSATHLL
Sbjct: 529 IRTSSGVFNVEDTKKSGQA-FIHHGVVNMGSLQKSQTADAQVVSAIRSASARNHSATHLL 587

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  VSQ GS ++ + LRFD ++   ++  +L +IE  VN+ I  N+     +
Sbjct: 588 HAALRKVLGDSVSQKGSLVSSEMLRFDFSYDNAVSQKDLATIERLVNEQIQANVETHIEL 647

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV---EYEDG--GVHSSALCGGTHVSSTGEIMLL 708
           MN +DA+A GAAAL G KY + VRV+++   E EDG     S  LCGG HV  TG+I L 
Sbjct: 648 MNIDDAMAKGAAALFGEKYGETVRVLTMGTTEIEDGIQKPFSIELCGGLHVKRTGDIGLF 707

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+TG  A  ++   D +L +LA+ LK  +  V  RV+ + ++ R
Sbjct: 708 KITSESGIAAGIRRIEALTGMGALRYIQQADSQLTALANQLKAKRPEVADRVQTMADKQR 767

Query: 769 KLQLIHAKRKLQLNVEDLSCHK---------IADVNFMSHIISEVDSKELKSVMDALQKK 819
           +L+    K+  +LN +  S            IAD   +   ++ +D K ++ ++D ++ K
Sbjct: 768 ELE----KQIERLNQKIASAQAATLVDNVQTIADKKVLIAQVAGIDGKAMRGLIDDIKSK 823

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +Q  II+LVG  K+ + ++   V++ L     A D+ R  A  L  G GGG+P  AQ G 
Sbjct: 824 LQDTIIILVG-EKDGQLALAASVSKSLTGDIKAGDIIRHLADEL-EGKGGGKPDYAQGGA 881

Query: 880 PNGNK 884
           P+ +K
Sbjct: 882 PSSDK 886


>gi|307546333|ref|YP_003898812.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307218357|emb|CBV43627.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 868

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/885 (43%), Positives = 540/885 (61%), Gaps = 47/885 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F++ GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++   Y   T+ 
Sbjct: 4   ADIRQAFLSYFEERGHSIVPSSSLVPDNDPTLLFTNAGMVPFKDVFLGRDPRPYVRATSA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L + +
Sbjct: 64  QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWNFLTEVLGLPREK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA ++WK   G+  ++  R+   DNFW M +TGPCGP SE+FFD G  + 
Sbjct: 124 LWVTVHVSDDEAERIWKDEVGIDPERFSRL-DEDNFWQMGDTGPCGPSSEVFFDHGPEVW 182

Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS EE G+RYIE+WNLVFMQ+++        LPK SIDTGMGLER+A V+Q   +N
Sbjct: 183 GGPPGSPEEDGDRYIEVWNLVFMQYDRDAAGNMNPLPKPSIDTGMGLERIAAVMQGVHSN 242

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF++L+ A+ + TG  ++  +  + RVI DH+RS +FL+ADG+LP+NEGRGYVLRR
Sbjct: 243 YEIDLFQNLLAAAAEATG--HDDTSAPSLRVIADHIRSCAFLVADGVLPSNEGRGYVLRR 300

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG        L+ AL  EMG AYPEL +A+  IE  L  E+E+F +TL+
Sbjct: 301 IIRRAVRHGHKLGAQGCFFHKLVAALDAEMGEAYPELREARDQIERVLLKEEEQFARTLE 360

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ LL   L  L  D  L G+  FKLYDT+G P D+  D+   RG++ +D   F + LE
Sbjct: 361 HGMGLLGEALDALEGD-TLPGETVFKLYDTYGFPFDLTADVCRERGVS-LDEAGFERELE 418

Query: 424 EQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            QR RARA S  G+  G          E  G T F GYD L       EDR         
Sbjct: 419 AQRERARAASQFGVDYGAA-------LELEGQTDFTGYDRL-------EDR--------- 455

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 +++V  + +QG  +    + Q+  VV D+TPFY E+GGQ+GDTG    +G R  
Sbjct: 456 ------ATVVALVDEQGNALARLEAEQRGVVVLDRTPFYGESGGQVGDTGYLELEGGRFL 509

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D QK+A G  +H   +  G L    S+   +D   R     NHSATHLLH AL  +LG
Sbjct: 510 VEDTQKQA-GHHLHQGRLLEGELEVGASVTPRVDPSLRAATVRNHSATHLLHQALRMVLG 568

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS +TP+ LRFD +H +P+T+ +L  +E  VN+ +  N P     M  ++A   
Sbjct: 569 DHVQQKGSLVTPERLRFDFSHFEPMTAEQLAEVERLVNEQVLANAPTRIEHMTLDEAKEK 628

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GAAAL   KY D VRV+++  +D    S  LCGGTHV+ +G+I   +IV+E+ I +G+RR
Sbjct: 629 GAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCCHIVAEAGIASGVRR 685

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEAITG+ A ++   Q+ ++  +   LK     V  RV  + E  R+L+    + K +L 
Sbjct: 686 IEAITGEGALAYFREQEARVARIGERLKAKPEQVEERVTSLVERNRELEKELERLKAKLA 745

Query: 783 VEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KA 836
               S      H++  +  ++  +  V  KEL+ ++D L+ K+ SG+++L    ++  K 
Sbjct: 746 SAAGSDMLGEAHEVKGIKVLAKRLEGVSGKELRGLLDQLKNKLGSGVVVLGVGDEQAGKV 805

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S++  VT+DL  R  A +L    A  + GG GGGRP MAQ+GG +
Sbjct: 806 SLIAGVTDDLTGRIKAGELVNHVASQV-GGKGGGRPDMAQAGGSD 849


>gi|17545516|ref|NP_518918.1| alanyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|20532248|sp|Q8Y193|SYA_RALSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17427809|emb|CAD14499.1| probable alanyl-trna synthetase (alanine--trna ligase) (alars)
           protein [Ralstonia solanacearum GMI1000]
          Length = 884

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/921 (42%), Positives = 545/921 (59%), Gaps = 65/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    
Sbjct: 2   KASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L  
Sbjct: 62  SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEI
Sbjct: 122 DKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229
           F+D G  I GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG
Sbjct: 182 FYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGMG 241

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           +ER+A +LQ   +NY+IDLF+ L+ A+ + T  K   NN +  RVI DH+R+ +FLI DG
Sbjct: 242 MERLAAILQHVHSNYEIDLFQALVSAAARETNTKDLANNSL--RVIADHIRACAFLIVDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + +
Sbjct: 300 VIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVKEMGEAYPELREARDRVVD 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDE---ILNGDVAFKLYDTHGLPLDIMQD 403
            LR+E+ RF +T++ G+ +LDG L  L   GKDE   +L+G++AFKL+DT+G PLD+ QD
Sbjct: 360 VLRTEEARFFETIEHGMSILDGALGELKAAGKDEKQRMLDGELAFKLHDTYGFPLDLTQD 419

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           + C      +D  +F+ A+  QR +ARA     + +GT       L      T F GYD 
Sbjct: 420 V-CRENDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYDQ 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                         +S V A+   G  V E   GQ   VV D TPFYA
Sbjct: 472 LLSE----------------------TSRVTALFVDGASVPEMRPGQTGVVVLDHTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GD G      +   + D QK    +F H   +  G+L+   ++   +D   R +
Sbjct: 510 ESGGQVGDQGTLKAATVWFDVADTQKVLPEVFGHQGTLRTGVLKVGDAVGAEVDAVRRAR 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  
Sbjct: 570 TMRNHSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNTPMTPLQIREVEARVNAE 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I  N     ++M  +DA+ SGA AL G KY D VRV+++        S  LCGGTHV+ T
Sbjct: 630 ILANASTNAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIG------SSKELCGGTHVART 683

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ +
Sbjct: 684 GDIGLFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRIGEAAAALRAQPSELTQRIVQ 743

Query: 763 IWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQ 817
           + ++ + L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+
Sbjct: 744 VQDQVKSLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLK 803

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+++  I+L  +S + K +++  VT D   R  A +L    A+ + GG GGGRP MAQ+
Sbjct: 804 DKLKTAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQA 861

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG   +K  QA+AGV +++++
Sbjct: 862 GGTEPDKLPQALAGVTAWVQQ 882


>gi|88798293|ref|ZP_01113879.1| Alanyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88779069|gb|EAR10258.1| Alanyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 868

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/904 (42%), Positives = 551/904 (60%), Gaps = 51/904 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FLEFF+K+ H ++P+ SL+P +DPTL+FTN+GM  FK++F G ++  Y   TT
Sbjct: 3   TSEIRRRFLEFFEKHEHRVVPAGSLVPGDDPTLLFTNAGMNQFKDVFLGTDRRDYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L + 
Sbjct: 63  AQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELGLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TVY +D+EA  +W    G+  +++ R+   DNFW M +TGPCGPCSEIF+D GE +
Sbjct: 123 KLWVTVYQDDDEAADIWINDIGVDPNRLSRLGDKDNFWMMGDTGPCGPCSEIFYDHGEEV 182

Query: 184 PGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           PGG PGS ++  +RYIEIWNLVFMQF+      R  LPK S+DTGMGLER+A +LQ   +
Sbjct: 183 PGGPPGSPDDDLDRYIEIWNLVFMQFDTLADGSRVPLPKPSVDTGMGLERLAAILQGVHS 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300
           NY+IDLF+ LI+A+ +VTG      +I N   RVI DH+RS++FLIADG++P+NEGRGYV
Sbjct: 243 NYEIDLFQALIRAAMRVTGC----TDIENRSLRVIADHIRSTAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +  +  L+  L  +MG AYPEL +    + + L+ E+E+F +
Sbjct: 299 LRRIIRRAVRHGYKLGCQDLFLFKLVDDLVDQMGEAYPELAEQADHVRKVLKIEEEQFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  ++ + +  ++ G++ FKLYDT+G P D+  D+   +GL  ID   F  
Sbjct: 359 TLENGMTILEQGIADI-EGNVIPGELVFKLYDTYGFPADLTADVAREKGL-DIDQDGFES 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQK 479
            + EQR RA+       S    K+   L     GAT F+GY+ L              + 
Sbjct: 417 RMAEQRKRAQ-------SANKFKMDRDLDLALDGATNFLGYETL------------AAEG 457

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             I L  G  +     V Q  + +E V      V+ DQTPFYAE+GGQ GD G    +  
Sbjct: 458 QVIRLLRGEDT-----VSQLSVGDEGV------VILDQTPFYAESGGQAGDRGVITTEAA 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++ D QK  +G F+H   V  G+L+T+  +   +    R   + +HSATHLLH AL  
Sbjct: 507 SLEVIDCQKH-QGHFLHQVRVTDGVLKTDDRVAAKVQRNERENTARHHSATHLLHAALRE 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV Q GS +T D LRFD +H + +T+ EL  IE  VN  I  N  V T +M+ + A
Sbjct: 566 VLGTHVQQRGSLVTHDKLRFDFSHLEAVTAEELVQIETLVNHHIMANAEVTTELMDIDSA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA AL G KY+D+VRV+++  +    +S  LCGGTHV  TG+I L  IV+ES I AG
Sbjct: 626 KAAGAVALFGEKYDDQVRVLTMGED---AYSKELCGGTHVQRTGDIGLFRIVAESGIAAG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRR+EA+ G  A + +  +D  +  L+   K S   +  +V++     + L+   +K K 
Sbjct: 683 IRRVEAVAGPYALAEIRQRDAVVNRLSGQFKCSVDQLESKVQQAVAHSKDLEKELSKLKD 742

Query: 780 QL---NVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L      DL+     +  V  ++  +  VD+K L+S MD ++ K+ S +I++V +  E 
Sbjct: 743 KLASAAAGDLTSEVKDVQGVKVLAVRLDGVDAKSLRSTMDQMKSKLGSAVILIVAVDGE- 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  +   VT+DL   F A +L +     L G  GGG+P MA +GG + NK   A+  V +
Sbjct: 802 KVQLAAGVTKDLTATFKAGNLIK-DVGALMGAKGGGKPDMAMAGGGDINKIPDALQAVPT 860

Query: 895 FLKK 898
           ++++
Sbjct: 861 WVEQ 864


>gi|212212531|ref|YP_002303467.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010941|gb|ACJ18322.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 865

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/904 (42%), Positives = 556/904 (61%), Gaps = 52/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ   
Sbjct: 2   NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L  
Sbjct: 62  SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G  
Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGST 181

Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PGS+E +GERY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q   
Sbjct: 182 ISGGPPGSAEADGERYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGVH 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF++L++A    T +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYVL
Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  T
Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEMQFSNT 359

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++A
Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417

Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +E QR ++ +AH           I        G TQF+GY+ L                 
Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                N  ++++ +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D  +R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L    +++ DV+ +  +   +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             ++  VT++ L+ FNA + LA ++ KV  GG  GGRP +AQ  G      + A+A V  
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857

Query: 895 FLKK 898
           +++K
Sbjct: 858 WIEK 861


>gi|242238445|ref|YP_002986626.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242130502|gb|ACS84804.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 875

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/909 (44%), Positives = 556/909 (61%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAILNAWELLTGPQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W  + G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYATDDEAYDIWANVVGIPQERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+ID+F+ LI  + +V G +   N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 VSAVLQHVNSNYEIDVFRTLIAEAAKVVGTRDLNNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL   + ++E  L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIDVMGSAADELRTQQTVVELALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           SE+E+F +TL+RGL LLD  +  L  D  L+G+ AF+LYDT+G PLD+  D+   RGL  
Sbjct: 362 SEEEQFARTLERGLSLLDEEIRTLQGD-TLSGEAAFRLYDTYGFPLDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + +E QR RAR  S G G+      + SL     AT F GYD         E 
Sbjct: 420 VDETGFEREMEAQRQRAREAS-GFGAD-----YNSLIRVDSATTFCGYD-------HAEQ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           R                S V A+ ++GE V+E  +G +  V+ D+TPFY E+GGQ+GD G
Sbjct: 467 R----------------SHVVALYRKGEPVQEISAGDEAVVILDETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      + D QK     F H   + +G LR   ++   +D   R ++ +NHSATHL
Sbjct: 511 VLKGVSAYFVVDDTQKYGRA-FGHVGKLTQGSLRVNDAVDAVVDDVRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +    LRFD +H + +   E++ +ED VN  + +NLPV T 
Sbjct: 570 LHAALRQVLGTHVAQKGSLVNDRYLRFDFSHPEAMKPDEIRQVEDIVNAQVRRNLPVDTA 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  +DA A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  IVS
Sbjct: 630 IMAIDDARAKGAMALFGEKYDDQVRVLTM-----GDFSIELCGGIHARRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES   AGIRRIEA+TG+ A + L  Q + L+ +   +K    N++ +V  + E  R L  
Sbjct: 685 ESGTAAGIRRIEAVTGEGAVASLHHQSDLLQDVTLLVKGDANNLIEKVRSLLERNRGLEK 744

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIML 827
           +L+  K +           K  D+N +  ++   S V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELLQLKEQQAAQESSSLAGKAKDINGVKLLVTQLSNVEPKMLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             I  E K S++  VT+ L +R  A +L    A  + GG GGGRP +AQ+GG + +    
Sbjct: 805 STIV-EGKVSLIAGVTQGLTERVKAGELVGFVANQV-GGKGGGRPDLAQAGGSDADALPS 862

Query: 888 AIAGVASFL 896
           A+A V +++
Sbjct: 863 ALASVEAWV 871


>gi|27262306|gb|AAN87434.1| Alanyl-tRNA synthetase [Heliobacillus mobilis]
          Length = 883

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/906 (43%), Positives = 563/906 (62%), Gaps = 45/906 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FLE+F++ GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   TT 
Sbjct: 6   NRVRQLFLEYFEQKGHTVVASSSLVPHNDPTLLFTNAGMNQFKDLFLGYEKRPYVRATTS 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L + +
Sbjct: 66  QKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTDVVKLPKDK 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY T+Y +DEEA +LWKK  G+  ++IIR+   DNFWSM +TGPCGPCSEI  D+GE + 
Sbjct: 126 LYATIYLDDEEAHELWKKEIGVPEERIIRLGEKDNFWSMGDTGPCGPCSEILIDRGEHLR 185

Query: 185 GGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            G    +    + +R++EIWNLVFMQF +  +     LPK SIDTGMGLER+ +VLQ+  
Sbjct: 186 CGAEECAIGKCDCDRWLEIWNLVFMQFNRDEQGVMTPLPKPSIDTGMGLERITSVLQDVP 245

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           +NYD DL + LI   EQ++G +Y  ++     RVI DH+RS +FLI DG+LP NEGRGYV
Sbjct: 246 SNYDTDLLRPLITYVEQLSGKEYHRDDRGFPFRVIADHIRSCTFLITDGVLPGNEGRGYV 305

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + +++G  +P M  ++P +   MG AYPE+ + +  +++ ++ E+ERF +
Sbjct: 306 LRRILRRAVRFGKVIGIEKPFMYQIVPVVVELMGEAYPEIKEKQDFVQKVIKIEEERFHE 365

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+ +   +++ + +D   +L G  AF LYDT+G PLD+ +DI    GL  +D   F
Sbjct: 366 TLHEGMRIAADIVAKVKEDGGGVLPGRQAFTLYDTYGFPLDLAEDIAEENGLT-VDKDGF 424

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+E QR RARA       G   +IW  L  K G T F GY  L G             
Sbjct: 425 AAAMEAQRERARAARQDTSYGAGMEIWADLLNKLGPTAFTGYGQLSG------------- 471

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S + AIV   E V EA  G  V+VV  +TPFYAE+GGQ+GDTG    D 
Sbjct: 472 ----------QSQLLAIVSGPEQVAEASVGTAVQVVLAETPFYAESGGQIGDTGYIRTDK 521

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             ++I D +K A G+FVH  +VE G  +   ++   +    R+ ++ +HSATHLLH AL 
Sbjct: 522 AIIRIDDTKKMAGGLFVHVGVVEEGTFQAGETVTAEVTGLRRQAIARHHSATHLLHRALK 581

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +T D LRFD +H  P+T  E K IE++VN  + ++LPV       ++
Sbjct: 582 DVLGEHVNQAGSLVTGDRLRFDFSHFTPLTREEWKQIEESVNRQVFRSLPVEVFEATLDE 641

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV +     G +S  LCGGTH+ +T +I L  +VSE  I A
Sbjct: 642 AKAMGATALFGEKYGDHVRVVRM-----GDYSMELCGGTHLQNTAQIGLFKLVSEGGIGA 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIH 774
           G+RR+EA+TG+ A  +L  Q+E ++ LA  LKV   +V  RVE    ++ E+ R+++ + 
Sbjct: 697 GLRRLEAVTGEAALDYLNEQEEIVRGLAEKLKVPPVDVAHRVETLQSQVREKEREIEQLL 756

Query: 775 AKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           A R  +  VEDL  ++  I+ V  ++  +   D   L+ + D L++K+ SG+++L  +  
Sbjct: 757 A-RLAKYQVEDLLANREEISGVQVLAAKVQAPDMDALRQMSDLLKEKMGSGVLILGSVVG 815

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++   T+D++ R  +A +L + +AK   GGGGGGRP MAQ+GG + +K  +A+  
Sbjct: 816 D-KVNLVASATKDIVGRGVHAGNLIKEAAKTC-GGGGGGRPDMAQAGGKDPSKLAEALDA 873

Query: 892 VASFLK 897
               LK
Sbjct: 874 AKKLLK 879


>gi|207728244|ref|YP_002256638.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein
           [Ralstonia solanacearum MolK2]
 gi|206591490|emb|CAQ57102.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein
           [Ralstonia solanacearum MolK2]
          Length = 893

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/916 (42%), Positives = 544/916 (59%), Gaps = 61/916 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    +
Sbjct: 16  ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAAS 75

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L   
Sbjct: 76  VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 135

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEIF
Sbjct: 136 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 195

Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230
           +D G  I GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG+
Sbjct: 196 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 255

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG+
Sbjct: 256 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 313

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + + 
Sbjct: 314 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 373

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+ C  
Sbjct: 374 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 432

Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
               +D  +F+ A+  QR +ARA     L +GT       L      T F GYD L    
Sbjct: 433 NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT-------LDYTGDKTTFHGYDQL---- 481

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            ++E                 ++ V A+   G  V+    GQ   VV D TPFYAE+GGQ
Sbjct: 482 -VRE-----------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 523

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   NH
Sbjct: 524 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 583

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N 
Sbjct: 584 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 643

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L
Sbjct: 644 QTAAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 697

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ 
Sbjct: 698 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQV 757

Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+++
Sbjct: 758 KTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 817

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 818 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 875

Query: 883 NKADQAIAGVASFLKK 898
           +K  QA+AGV +++++
Sbjct: 876 DKLPQALAGVTAWVQQ 891


>gi|66768815|ref|YP_243577.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|81305217|sp|Q4UTR6|SYA_XANC8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|66574147|gb|AAY49557.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 882

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/909 (43%), Positives = 547/909 (60%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+         +D  
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMAPTVFLGYE--------AQDAD 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            L               V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 472 ALK--------------VVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   +V +V  + +  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL  S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +  K A V  V             L  +++++  GG GGGRP +AQ GG +G     A+
Sbjct: 813 AAGGKVALVAGVNGGPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|166712451|ref|ZP_02243658.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 882

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/916 (43%), Positives = 543/916 (59%), Gaps = 64/916 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPT 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS+ E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSTDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFECAMERQRETARAAG-KFGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGRL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALRDVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L  +L
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL      DL    I  A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDCVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSA-KVLG------GGGGGGRPHMAQSGGPNG 882
            S  K A         L+   N     ++ A ++LG      GG GGGRP +AQ GG +G
Sbjct: 813 ASGGKVA---------LVSGVNGSPTGKVKAGELLGHIASQIGGKGGGRPDLAQGGGEDG 863

Query: 883 NKADQAIAGVASFLKK 898
                A+ GV  ++K+
Sbjct: 864 PALATALDGVPLWVKQ 879


>gi|118340595|gb|ABK80645.1| putative alanyl-tRNA synthetase class IIc [uncultured marine
           Nitrospinaceae bacterium]
          Length = 878

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/903 (41%), Positives = 546/903 (60%), Gaps = 44/903 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL++F+  GH ++ S +L+P NDPTLMFTN+GMV FK++F G+EK  Y    +VQK
Sbjct: 6   LRKKFLQYFEDRGHTVVSSYALVPKNDPTLMFTNAGMVQFKDVFLGEEKRDYNRAVSVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+ VGRT+RHHTFFEMLGNFSFG YFK+ AIQ  W+ LT    L + RLY
Sbjct: 66  CVRAGGKHNDLEMVGRTSRHHTFFEMLGNFSFGDYFKKEAIQFGWEFLTDVIGLPRDRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I+V+++D++AF +W     +  ++I ++   DNFW+M  TGPCGPCSEIF DQG+ I  G
Sbjct: 126 ISVFEDDDDAFNIWVDDIKMPRERIYKLGEKDNFWAMGSTGPCGPCSEIFIDQGKAIGCG 185

Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            P S E G   +R++EIWNLVFMQ+++    +   LP   IDTGMGLER+A V+Q +T N
Sbjct: 186 QP-SCEVGCDCDRFLEIWNLVFMQYDRDKAGKLTPLPHPCIDTGMGLERLAAVVQGRTTN 244

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           YD DL   +I  + ++TG +Y   N V+   RV+ DH R+S FLI+DG++P+NEGRGYVL
Sbjct: 245 YDTDLMMSIITVAARITGKEYGKQNEVDVSLRVLTDHARASVFLISDGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ + +LL    P    +   +  +   AYPEL      I++ + +E+E F  T
Sbjct: 305 RKIIRRALRHGKLLEQKGPFFHRITSKVIEDFKGAYPELSGNSEFIQKVVINEEESFSNT 364

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L  G   L+ ++  + KD++  + G+  FKLYDT+G P D++++     GL  +D+  + 
Sbjct: 365 LHYGTQRLEEIIEKVSKDKLCTIPGEEIFKLYDTYGFPTDLVEETAKDAGLT-LDMEGYT 423

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQR++A     G G       +    +    T F GY   +G        K+L   
Sbjct: 424 RAMNEQRTKATNSWKGSGEKEVPPFYREFLQSSAPTVFEGYGTTQGQG------KIL--- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                         AI++    VE A +G ++E + D+TPFY E+GGQ GD+G A  + +
Sbjct: 475 --------------AILKDHAPVESASTGDEIEFLTDKTPFYGESGGQTGDSGRASNENV 520

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L + D  K   G+ VH A +  G +R   +L L +  Q R   ++NHSATHLL  AL  
Sbjct: 521 QLSLDDATKPLPGLIVHKAKIISGTMRNGETLKLEVHPQVRGNTALNHSATHLLQAALKE 580

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H+ Q GS +  D LRFD TH  P+T  E   IE  VN+ I  N+ V T+ M+ + A
Sbjct: 581 VLGEHIKQAGSLVASDRLRFDYTHFSPLTDKERVRIESRVNEKIRDNIQVATQEMDIDTA 640

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I  GA AL G KY D VRVV V        S  LCGGTHV++TG+I L  I SE SI +G
Sbjct: 641 IKEGAVALFGEKYGDTVRVVDVLG-----FSKELCGGTHVNATGDIGLFRITSEGSIASG 695

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRK 778
           +RRIEA+TG +A +++  + E L ++   LK      + +++++ E+ R+L+  I   ++
Sbjct: 696 VRRIEAVTGAKAYNNIQAEQESLAAIRVLLKAPSNEEITKLKKLLEKNRQLEKEITTLKE 755

Query: 779 LQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
             +N ++ S      KI DV+ +   I  +D+K L++ +D  + +++SGI+ +VG   + 
Sbjct: 756 KMVNGQESSGLDEVQKIGDVSVLIKKIEGMDAKTLRTFIDNTKNQLKSGIV-VVGSVADG 814

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+ + VT+DL  +++A ++ + S  V+ GG GGGRP MAQ+GGP   K DQA+     
Sbjct: 815 KVSMAVGVTKDLTGKYHAGNIIK-SIAVIVGGSGGGRPDMAQAGGPEIEKLDQALKKAEE 873

Query: 895 FLK 897
            ++
Sbjct: 874 LIR 876


>gi|299770946|ref|YP_003732972.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701034|gb|ADI91599.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 883

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/914 (44%), Positives = 538/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 9   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT +    L +
Sbjct: 69  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLALPK 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 129 DRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 189 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ EG   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL  E
Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLVRE 366

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R    ID
Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + S+ +  G TQF GY              
Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY-------------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                  I+ T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 465 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSATHLLH
Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T ++
Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTTELL 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY + VRV+++    D    S  LCGG HV  TG+I L  I SE
Sbjct: 635 DIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    LQ  
Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSALQ-- 752

Query: 774 HAKRKLQLN--VEDLSCHKIAD-VNFMS------HIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN  + +    ++ D V  +S        +  VD+K L+++ D+++ K+++ +
Sbjct: 753 --KQIEQLNQKLANFQASELIDQVQTISGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|145589899|ref|YP_001156496.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|205830176|sp|A4SZL8|SYA_POLSQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145048305|gb|ABP34932.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 874

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/911 (43%), Positives = 548/911 (60%), Gaps = 60/911 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  +L+FF + GH+++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   VTQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRSYTRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F+L + 
Sbjct: 63  AQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQVFELPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L +TVY ED+EA+ +WK   G+ A++IIRI  N       DNFW M +TGPCGPC+EIF
Sbjct: 123 KLLVTVYAEDDEAYAIWKDQIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D GE IPGG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER+A 
Sbjct: 183 YDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQAS-EQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILP 292
           VLQ   +NY+IDLF +LI+A+ + V G   E  +  +   +VI DH+R+ SF++ DG++P
Sbjct: 243 VLQHVHSNYEIDLFVNLIKAAKDTVDGAGGENCDAQSPSLKVIADHIRACSFIVVDGVIP 302

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            N GRGYVLRRI RRA+ +   LG  +P    L+PAL  EMG AYPEL  A+  + E L+
Sbjct: 303 GNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMGDAYPELRAAQDKVSEVLK 362

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF +T+  G+ +LDG L+  G  ++++G+ AF+L+DT G PLD+  D+   RG+  
Sbjct: 363 QEEERFFQTIANGMEILDGALA--GGAKVVDGETAFRLHDTFGFPLDLTADVCRERGVT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR--GSKFMK 470
           +D   F  A+++QR +ARA           K+   L  K   T+F GY+ L+  G+K   
Sbjct: 420 VDSEGFEVAMQKQRDQARA-------AGKFKVAQGLDYKGVPTRFHGYETLKHEGAK--- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+   G  V    +G    VV D TPFYAE+GGQ+GD
Sbjct: 470 ---------------------ITALYLDGSAVNSVKAGDAAVVVLDNTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +  R  + D  K    +F H   V  G L+   +L   +D   R     NHSAT
Sbjct: 509 KGELRNEAARFTVDDTFKIQADVFGHQGEVLEGELKVGDTLNALVDIALRNDTMRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +     RFD TH+ PIT+ +++ IED VN  I  N    
Sbjct: 569 HILHKALREVLGDHVQQKGSLVDASKTRFDFTHNAPITAEQIRRIEDIVNAEILDNSATS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M+ EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I  L I
Sbjct: 629 GKVMSLEDAQKTGAMMLFGEKYGDEVRVLEIG------SSKELCGGTHVSRTGDIGSLKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AGIRR+EA+TGQ A   L G ++K+   A+ LK   G++V RV ++ E  R  
Sbjct: 683 VSEGGVAAGIRRVEAVTGQNALHFLQGLEDKINEAATILKTHPGDLVNRVAQLQESLRLA 742

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825
           + +L     KL  +  D    +  DVN +  + + +D  +   L+  MDAL+ K+++  I
Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGLKVLAARLDGADAGVLRETMDALKAKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  VT D + +  A DL    A+ + GG GGG+P MA +GG + +K 
Sbjct: 803 VLASVQGD-KVSLIAGVTADSIAKVKAGDLVNFVAQQV-GGKGGGKPEMAMAGGNDPSKL 860

Query: 886 DQAIAGVASFL 896
             A+ GV  ++
Sbjct: 861 GAALDGVKDWV 871


>gi|293608692|ref|ZP_06690995.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829265|gb|EFF87627.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 878

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/914 (44%), Positives = 535/914 (58%), Gaps = 60/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT E    L +
Sbjct: 64  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 DKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NYDIDLF+HL++A+  + G++ +G   +  RV+ DH RS  FLIADG+ P+N
Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDQGQPSL--RVVADHARSCCFLIADGVNPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL  E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATLIRE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R    ID
Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +  QR RAR       +G     + ++ +  G TQF GY              
Sbjct: 420 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                  I+ T G   IV AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDTG  
Sbjct: 460 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSATHLLH
Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T ++
Sbjct: 570 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTTELL 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I SE
Sbjct: 630 DIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    LQ  
Sbjct: 690 GGVAAGVRRIEAVTGTKALDVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSALQ-- 747

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QLN         +L      IA    +   +  VD+K L+++ D+++ K+++ I
Sbjct: 748 --KQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAI 805

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 864 FGQVIAALPAWLEQ 877


>gi|91774923|ref|YP_544679.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|122400203|sp|Q1H3U9|SYA_METFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91708910|gb|ABE48838.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 874

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/909 (42%), Positives = 546/909 (60%), Gaps = 56/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   T+ 
Sbjct: 4   NQIRQAFLDYFASKGHQIVSSSSLVPAGDPTLLFTNAGMNQFKDVFLGFDKRPYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L   +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTQVFKLPADK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY ED+EA+ +W +  G+ A+++IRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LTVTVYAEDDEAYDIWTREIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE IPGG PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER+A V
Sbjct: 184 DHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERIAAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ +VT      +  +  +V+ DH+R+ SFLIADG++P NEG
Sbjct: 244 LQGVHSNYEIDLFQNLIKAAARVTNTTDLDSPSL--KVLADHIRACSFLIADGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG  +     ++ AL  EMG AYPEL   +  I   LR E++
Sbjct: 302 RGYVLRRIIRRAIRHGYKLGARQAFFHLMVSALVNEMGDAYPELKSGEERITSILRQEED 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T++ G+ +L+  L  + K  + + NG+ AFKL+DT G PLD+  D+   RG++ +D
Sbjct: 362 RFFETIEHGMAILEAELEEMAKTGNHVFNGETAFKLHDTFGFPLDLTADVCRERGVS-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F+ A+  Q+ +ARA           K+  +L+    AT F GYD L          K
Sbjct: 421 SAAFDAAMARQKEQARA-------AGKFKMAANLEYTGNATTFHGYDTLEAQG------K 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           VL                 A+ + G  V     G+   VV D TPFYAE+GGQ+GD G  
Sbjct: 468 VL-----------------ALYKDGSAVPALNEGELGVVVLDNTPFYAESGGQVGDQGIL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G     Q+ D QK    +F HH ++  G LR    +   +D  +R +   +HSATHL+H
Sbjct: 511 KGAEGIFQVEDTQKIQASVFGHHGVLSTGTLRVGDEVSARVDLLSRHRTMRHHSATHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS + PD  RFD +H+ P+T+ E++ IED VN  I  N P + R+M
Sbjct: 571 KALRAVLGSHVQQKGSLVDPDKTRFDFSHNAPVTADEIRRIEDIVNAEILANTPTLARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  IVSES
Sbjct: 631 PIDEAQKTGAMMLFGEKYGDEVRVLDIGT------SRELCGGTHVSRTGDIGLFKIVSES 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA  G  A  H+  Q + L   A+  KV    + G++ +  E+ + L+   
Sbjct: 685 GVAAGVRRIEAAAGDVALRHIQQQQQLLADAAASFKVPAIELAGKISQTLEQIKALEKEL 744

Query: 775 AKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L     ++L+     I  +  ++  +   D+  L+  MD L+ K+++  I+L  
Sbjct: 745 ARLKSKLASSQGDELASQAVNIGGIKVLAATLEGADANTLRETMDKLKDKLKTAAIVLAS 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K SV   VT D   R  A +L    A  + GG GGG+P MA +GG + ++  +A+
Sbjct: 805 VNGD-KVSVAAGVTTDTTARIKAGELVNFVAAQV-GGKGGGKPDMAMAGGSDPSQLPRAL 862

Query: 890 AGVASFLKK 898
           A VA ++++
Sbjct: 863 ASVAGWVEE 871


>gi|84390150|ref|ZP_00991412.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376804|gb|EAP93679.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 860

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/911 (42%), Positives = 543/911 (59%), Gaps = 71/911 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ ADKI+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G     N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+E QR RAR A   G     T K+  +       T+F GY    G       
Sbjct: 420 DEEGFEKAMEAQRKRAREAGQFGTDYNATLKVDTN-------TEFCGYTATEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------AGEISALFVDGEEVPSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +   +D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVQDTQKLGNA-FAHHGELVEGVFAQGDKVEAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           E  I AGIRRIEA+TG+ A   +  Q    +EKL   A   K  + ++         +  
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKSLEKDI---------QLL 734

Query: 769 KLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           K ++  A+   +   VED+S  K+     +   I   D+K L++++D  + ++ SGII++
Sbjct: 735 KEKMAAAESANIMGKVEDISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGSGIILI 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             I+ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +
Sbjct: 790 ANIA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847

Query: 888 AIAGVASFLKK 898
           A+  V ++L++
Sbjct: 848 ALKSVRTWLEE 858


>gi|83747684|ref|ZP_00944719.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725594|gb|EAP72737.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 880

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/916 (42%), Positives = 544/916 (59%), Gaps = 61/916 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    +
Sbjct: 3   ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRAAS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L   
Sbjct: 63  VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEIF
Sbjct: 123 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230
           +D G  I GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG+
Sbjct: 183 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG+
Sbjct: 243 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + + 
Sbjct: 301 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+ C  
Sbjct: 361 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 419

Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
               +D  +F+ A+  QR +ARA     L +GT       L      T F GYD L    
Sbjct: 420 NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT-------LDYTGDKTTFHGYDQL---- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            ++E                 ++ V A+   G  V+    GQ   VV D TPFYAE+GGQ
Sbjct: 469 -VRE-----------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   NH
Sbjct: 511 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N 
Sbjct: 571 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 630

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L
Sbjct: 631 ATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 684

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ 
Sbjct: 685 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQV 744

Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+++
Sbjct: 745 KTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 805 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 862

Query: 883 NKADQAIAGVASFLKK 898
           +K  QA+AGV +++++
Sbjct: 863 DKLPQALAGVTAWVQQ 878


>gi|152997630|ref|YP_001342465.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|205830138|sp|A6W1F1|SYA_MARMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150838554|gb|ABR72530.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 872

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/896 (43%), Positives = 545/896 (60%), Gaps = 65/896 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R +FL +F+   H+++ SSSL+P NDPTL+FTN+GMV FK++F G++   Y   TT 
Sbjct: 4   SELRQSFLSYFESKQHQIVESSSLVPGNDPTLLFTNAGMVQFKDVFLGEDIRPYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT    L   +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYAWEFLTVVLKLPTEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY +D+EAF +W K  GL  +KIIRI  N       DNFW+M +TGPCGPC+E+F+
Sbjct: 124 LLVTVYADDDEAFDIWNKDIGLPVEKIIRIGDNKGGRYQSDNFWAMGDTGPCGPCTEVFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GG PGS EE G+R+IEIWN+VFMQF +        LPK S+DTGMGLER+A +
Sbjct: 184 DHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSADGTMASLPKPSVDTGMGLERIAAI 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF++LI+A+ QV G +      +  RVI DH+RS SF+I DG++P+NEG
Sbjct: 244 LQGVHSNYEIDLFQNLIKAAAQVVGTQDLSAQSL--RVIADHIRSCSFMIVDGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        L+ AL  EMG AYPEL + K  +   L  E+E
Sbjct: 302 RGYVLRRIIRRAIRHGNKLGQKGVFFHKLVEALDVEMGEAYPELTKLKERVAAILLKEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F KTLD+G+ +L+  +S LG  +++ G+  FKLYDT+G P D+  D+    GL  ID  
Sbjct: 362 QFAKTLDQGMKILEEAISGLGDQKVIPGETVFKLYDTYGFPADLTNDVARENGLE-IDEA 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-----YGATQFIGYDLLRGSKFMKE 471
            F  A++ QR+RAR+ S            FS+         GAT+F GY  L G      
Sbjct: 421 GFEVAMDAQRARARSASN-----------FSMDMSGSVSVDGATEFTGYSNLNG------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V+ I+ +GE V    +GQ   VV  +TPFY E+GGQ+GD 
Sbjct: 464 -----------------QSAVEQIIVEGESVSSLQAGQTGLVVLAETPFYGESGGQVGDQ 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G     ++T+  K+ + + +HH  V  G L     +   +D   R   ++NHSATH
Sbjct: 507 GWLRGPAA-AKVTNTTKQGK-VHLHHVDVREGTLAVGDLVTTEVDRSLRNATALNHSATH 564

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS + P+ LRFD +H + +T+AE + +ED VN+ +  N  VVT
Sbjct: 565 LLHEALRRVLGDHVQQKGSLVNPERLRFDFSHFEGMTAAEFEQVEDMVNEQVRLNHEVVT 624

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ + A A GA AL G KY  +VRV+++    G  +S  LCGGTHVS TG+I L  IV
Sbjct: 625 EVMDIDSAKAKGAQALFGEKYESQVRVLTM----GADYSIELCGGTHVSRTGDIGLFKIV 680

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I +G+RRIEA+TG+ A       +  L  +A   K S+   + +V  + ++ R LQ
Sbjct: 681 SEGGIASGVRRIEALTGKAAIDATRHTETALGKIAGLFKASKEAALDKVVALNDQARALQ 740

Query: 772 --LIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
             L   K K+  L   DL+   + D+N    ++++V   D K L+ ++D L+ K++S +I
Sbjct: 741 KELDVLKGKMAALAGADLASQAV-DINGGKLLVAQVEVEDPKALRDLLDELKSKLESAVI 799

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L  ++ + K S++  VT++L     A DL ++ A  +  G GGGRP MAQ+GG N
Sbjct: 800 LLAAVN-DGKVSLIAGVTKELTKNVKAGDLIKMVAPYV-DGKGGGRPDMAQAGGNN 853


>gi|29654361|ref|NP_820053.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154706669|ref|YP_001424370.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|41018200|sp|Q83CQ6|SYA_COXBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830040|sp|A9KG28|SYA_COXBN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29541628|gb|AAO90567.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154355955|gb|ABS77417.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 865

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/904 (41%), Positives = 556/904 (61%), Gaps = 52/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ   
Sbjct: 2   NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L  
Sbjct: 62  SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G  
Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGPT 181

Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q   
Sbjct: 182 ISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGVH 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF++L++A    T +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYVL
Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  T
Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSNT 359

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++A
Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417

Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +E QR ++ +AH           I        G TQF+GY+ L                 
Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                N  ++++ +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D  +R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L    +++ DV+ +  +   +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             ++  VT++ L+ FNA + LA ++ KV  GG  GGRP +AQ  G      + A+A V  
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857

Query: 895 FLKK 898
           +++K
Sbjct: 858 WIEK 861


>gi|37525217|ref|NP_928561.1| alanyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|41018167|sp|Q7N7A5|SYA_PHOLL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|36784644|emb|CAE13544.1| alanyl-tRNA synthetase (alanine--tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 876

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/894 (43%), Positives = 551/894 (61%), Gaps = 55/894 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT +  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGKDWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +WK   G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYQTDDEAYDIWKNDVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NY+IDLF+ LI     VTG   + +N  + RVI DH+RS +FLI DG++P
Sbjct: 244 ITAVLQHVNSNYEIDLFRDLITVVANVTGATDDLSN-KSLRVIADHIRSCAFLICDGVVP 302

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + + ++E+ L+
Sbjct: 303 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLLEVMGAAGEELKRQQAVVEQILK 362

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D IL+G+ AF+LYDT+G P+D+  D+   R ++ 
Sbjct: 363 TEEEQFARTLERGLQLLDDELAKLSGD-ILDGETAFRLYDTYGFPVDLTADVCRERNIS- 420

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+E QR RAR  S G G+   E I   + E+   + F GYD           
Sbjct: 421 VDEAGFAVAMENQRRRARESS-GFGTDYNELI--KVDER---SDFSGYD----------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V AI + GE V +  +G++  V+ D+T FYAE+GGQ+GD+G
Sbjct: 464 ------------HNEQQATVTAIFRDGESVNQIQAGEEAIVILDKTAFYAESGGQVGDSG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +E+G L    ++   ID + R  + +NHSATHL
Sbjct: 512 ILSNTNCAFCVIDTQKYGQAIG-HIGKLEKGTLSVNHNINAVIDIERRDAIRLNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG HVSQ GS +    LRFD +H + +   +++ +ED VN  + QN PVVT 
Sbjct: 571 LHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNAEVRQNSPVVTE 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY ++VRV+S+     G  S+ LCGGTH + TG+I L  I++
Sbjct: 631 LMDLETAKVKGAMALFGEKYEEQVRVLSM-----GDFSTELCGGTHANRTGDIGLFRIIA 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEAITG++A   +  Q + L+ +A  +K    ++  +V    +  + L+ 
Sbjct: 686 ESGTAAGIRRIEAITGKKAVESVHQQVDLLQDIAQLVKSDIHSLSEKVRMTLDRAKALEK 745

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S       ++  V  +   +S  + K L++++D L+ ++ S II+L
Sbjct: 746 ELQQLKDQQAAQESSSLASKAKEVKGVKLLVSQLSNTEPKMLRTMVDDLKNQLGSAIIVL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             IS + K S+++ VT+DL  +  A +L    A+ + GG GGGR  MAQ+GG +
Sbjct: 806 STIS-DDKVSLIVGVTKDLTAKIRAGELISSVAQQI-GGKGGGRSDMAQAGGSD 857


>gi|309780932|ref|ZP_07675671.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308920235|gb|EFP65893.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 880

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/915 (42%), Positives = 545/915 (59%), Gaps = 61/915 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    +V
Sbjct: 4   SDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAASV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L   R
Sbjct: 64  QRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEIF+
Sbjct: 124 LWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGLE 231
           D G  + GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG+E
Sbjct: 184 DHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGME 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG++
Sbjct: 244 RLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGVI 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + E L
Sbjct: 302 PGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVVEVL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+ C   
Sbjct: 362 RTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDV-CREN 420

Query: 410 LAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              +D  +F+ A+  QR +ARA     + +GT       L      T F GY+ L     
Sbjct: 421 DVIVDEAAFDAAMTRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYEQL----- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           ++E                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GGQ+
Sbjct: 469 VRE-----------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGGQV 511

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   NHS
Sbjct: 512 GDQGTLKAATVWFDVVDTLKVRPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRNHS 571

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N  
Sbjct: 572 ATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFANAA 631

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L 
Sbjct: 632 TSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIG------SSKELCGGTHVARTGDIGLF 685

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ +
Sbjct: 686 KIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAVLRAQPSELTSRIVQVQDQVK 745

Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+Q+ 
Sbjct: 746 TLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQTA 805

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            I+L G   + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG   +
Sbjct: 806 AIVL-GSVTDGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPD 863

Query: 884 KADQAIAGVASFLKK 898
              QA+AGVA+++++
Sbjct: 864 NLPQALAGVAAWVQQ 878


>gi|325927198|ref|ZP_08188459.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118]
 gi|325542426|gb|EGD13907.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118]
          Length = 882

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/914 (43%), Positives = 540/914 (59%), Gaps = 60/914 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + +TD QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRANHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLE--- 749

Query: 775 AKRKLQLNVEDLSCHKIADVNFMS----------HIISEVDSKELKSVMDALQKKIQSGI 824
             R+L+     L+    AD+   +            +   D+K L+  MD L++++   +
Sbjct: 750 --RELESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSV 807

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G S  K A V  V             L  +++++  GG GGGRP +AQ GG +G  
Sbjct: 808 IVLAGASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPA 865

Query: 885 ADQAIAGVASFLKK 898
              A+ GV  ++K+
Sbjct: 866 LATALDGVPLWVKQ 879


>gi|320539040|ref|ZP_08038714.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030880|gb|EFW12885.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 875

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/909 (42%), Positives = 562/909 (61%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAISYAWELLTGEDWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++T+Y+ D+EAF +W+K  G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTIYETDDEAFDIWQKHIGVPAERIIRIGYNKGAAFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGAMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ    NY+IDLF+ LI    +VTG     N  +  RVI DH+R+ +FL++DG+ P
Sbjct: 244 IAAVLQHVNANYEIDLFRTLISVVAKVTGATDLDNKSL--RVIADHIRACAFLVSDGVSP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNESRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVVPLIEVMGSAADELKRQQSRVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L + E L+G++AF+LYDT G P+D+  D+   RGL  
Sbjct: 362 TEEEQFARTLERGLALLDDELNKL-QGETLDGEIAFRLYDTFGFPVDLTADVCRERGLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G  +     I        G+++F GYD         E+
Sbjct: 420 VDEAGFQQAMEAQRRRARESS-GFCADYNTMIRVD-----GSSRFSGYDY--------EE 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           ++               ++V A+ + G+ VE+  +G++  VV D TPFY E+GGQ+GD G
Sbjct: 466 QQ---------------AMVIALFRDGQPVEQINAGEEAVVVLDGTPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     ++D QK  +    H   + +G L+ +  +   ID + R ++ +NHSATHL
Sbjct: 511 VLKAARADFVVSDTQKYGQATG-HLGKLSQGSLKVKDRVDAQIDTERRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN  + +NL V T 
Sbjct: 570 LHAALRQTLGEHVAQKGSLVNDKYLRFDFSHYEAMKPEQIRRVEDLVNQQVRRNLLVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  IV+
Sbjct: 630 VMSLDDAKEKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHTSRTGDIGLFSIVT 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---- 768
           ES   AG+RRIEA+TG+ A + L  Q + L+ +A  +K    N+  ++    +  R    
Sbjct: 685 ESGTAAGVRRIEAVTGEGAIAKLHQQSDLLQVVAHLVKGDSSNLADKLHATLDRTRLLEK 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +LQ +  ++  Q +    S  K+ + V  +   +  V++K L+ ++D L+ ++ S II+L
Sbjct: 745 ELQQLKDQQAAQESASLSSQAKVVNGVKLLVSQLDNVEAKMLRIMVDDLKNQLGSAIIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K S++  VT+DL DR  A +L    A+ +  G GGGRP MAQ+GG + +    
Sbjct: 805 A-TTADDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-AGKGGGRPDMAQAGGTDVSALPA 862

Query: 888 AIAGVASFL 896
           A+  V +++
Sbjct: 863 ALNSVEAWV 871


>gi|261492574|ref|ZP_05989127.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311733|gb|EEY12883.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 875

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/905 (42%), Positives = 547/905 (60%), Gaps = 55/905 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G    GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +K   N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGTKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   FN  +  QR RA+A S   G+     I    K     T F GY          
Sbjct: 418 K-IDEDGFNAEMTAQRERAKASS-SFGTDYNNVIKVDSK-----TCFSGY---------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         T+   + V  +   G+ VE   SG+   V+ D+TPFYAE GGQ+GD
Sbjct: 461 ------------TETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK  + +F H   +  G L     +   +D + R  +++NHSAT
Sbjct: 509 SGQISAEICNFEVVDTQKYGQ-VFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD++  + IT ++L+ +E  VN  + +N+ V+
Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY + VRV  VE  D    S  LCGGTHV  TG+I L  I
Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRV--VEMSD---FSIELCGGTHVKQTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RRIEA+TG+ A + L    + ++  A  LK    + V ++ ++ E+ ++ 
Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742

Query: 771 --QLIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +L   K KL      DL+    +I  VN +   +  V+ K L++++D L+ ++ S ++
Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + E K ++++ VT+DL D+ NA  L    A+ + GG GGGRP MA +GG      
Sbjct: 803 VF-ATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860

Query: 886 DQAIA 890
            QA++
Sbjct: 861 LQALS 865


>gi|253702326|ref|YP_003023515.1| alanyl-tRNA synthetase [Geobacter sp. M21]
 gi|251777176|gb|ACT19757.1| alanyl-tRNA synthetase [Geobacter sp. M21]
          Length = 875

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/905 (43%), Positives = 549/905 (60%), Gaps = 59/905 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y    + QK
Sbjct: 6   IRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKREYLRAVSSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L + RLY
Sbjct: 66  CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLSKDRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPC+EIF+D G   PG 
Sbjct: 126 VTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNG---PGT 182

Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             GS +     + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q  T
Sbjct: 183 GCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLAPLPKPSVDTGMGLERISAVMQGVT 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +NYD DL + +I+  E+V+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGRGY
Sbjct: 243 SNYDTDLLQGIIRHIEKVSGKKYRDDERDDVSMRVIADHARAVTFLICDGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA  +A++LG  EP++  ++ A+   M  AYPEL++ +  +++ + +E+ERF 
Sbjct: 303 VLRRIMRRAARHAKMLGIAEPVLFRVVDAVNMMMSDAYPELLEREQYVKKVILAEEERFI 362

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLDRGL +L+   + L    +++++G++ FKLYDT G P+D+  DI+ + G   +D   
Sbjct: 363 ETLDRGLAILNEETAALRAKGEKVISGEIIFKLYDTFGFPVDLTADIVESEGFT-LDEDG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E+QR +AR +  G G      I+  L      T F+GY                 
Sbjct: 422 FALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYS---------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S + AIV+ G +VEEA +G++VE+V   TPFY E+GGQ GDTG     
Sbjct: 466 -------EQTAFSTISAIVKGGTLVEEAGAGEEVEIVTAATPFYGESGGQAGDTGTISTG 518

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++T   +    + VH   V  G +RT  +  L I   +R   + NH+ATHLL  AL
Sbjct: 519 SGHVEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVAHRAATARNHTATHLLQAAL 578

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS +TPD LRFD TH  P+T  E++ +E  VN  I  N PV  R M   
Sbjct: 579 REVLGEHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSPVEAREMPAT 638

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA+A+GA AL G KY D VRVV V        SS LCGGTHV   GEI    I+SE+ I 
Sbjct: 639 DALAAGATALFGEKYGDVVRVVKVG-----EVSSELCGGTHVHGAGEIGFFKIISEAGIA 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA TG  A + + G +++ + +A+ LK   G V+ +VE++    R+LQ     +
Sbjct: 694 AGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQ-----K 748

Query: 778 KLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L+     L+  K AD          V  +S +  E D+K L+ + D L+++I SGII+L
Sbjct: 749 ELETLQARLNASKSADLIQQVREQNGVKILS-VKVEGDAKGLRELSDTLKQRIGSGIIVL 807

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G S   +A++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +
Sbjct: 808 -GTSDAARANLLVAVTADLAGRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAE 865

Query: 888 AIAGV 892
           A+  V
Sbjct: 866 ALEAV 870


>gi|197119994|ref|YP_002140421.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|197089354|gb|ACH40625.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 875

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/899 (44%), Positives = 548/899 (60%), Gaps = 47/899 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y    + QK
Sbjct: 6   IRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKRDYLRAVSSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L + RLY
Sbjct: 66  CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLSKDRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPC+EIF+D G   PG 
Sbjct: 126 VTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNG---PGT 182

Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             GS +     + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q  T
Sbjct: 183 GCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLTPLPKPSVDTGMGLERISAVMQGVT 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +NYD DL + +I+  EQV+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGRGY
Sbjct: 243 SNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA  +A++LG  EP++  ++ A+   MG AYPEL++ +  +++ + +E+ERF 
Sbjct: 303 VLRRIMRRAARHAKMLGIAEPVLFRIVDAVNMMMGDAYPELLEREHYVKKVILAEEERFI 362

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLDRGL +L+   + L    +++++G+V FKLYDT G P+D+  DI+ + G   +D   
Sbjct: 363 ETLDRGLAILNEETAALKAKGEKVISGEVIFKLYDTFGFPVDLTADIVESEGFT-LDEDG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E+QR +AR +  G G      I+  L      T F+GY                 
Sbjct: 422 FALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYS---------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S + AIV+ G +VEEA +G ++E+V   TPFY E+GGQ GDTG     
Sbjct: 466 -------EQTAFSTISAIVKGGTLVEEASAGDEIEIVTAATPFYGESGGQAGDTGTISTG 518

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++T   +    + VH   V  G +RT  +  L I   NR   + NH+ATHLL  AL
Sbjct: 519 SGHIEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVANRAATARNHTATHLLQAAL 578

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS +TPD LRFD TH  P+T  E++ +E  VN  I  N  V +R M   
Sbjct: 579 REVLGDHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSTVESREMPAA 638

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA+A+GA AL G KY D VRVV V        SS LCGGTHV   GEI    I+SE+ I 
Sbjct: 639 DALAAGATALFGEKYGDVVRVVKVG-----DVSSELCGGTHVHGAGEIGFFKIISEAGIA 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA TG  A + + G +++ + +A+ LK   G V+ +VE++    R+LQ      
Sbjct: 694 AGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELETL 753

Query: 778 KLQLNVEDLS--CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKE 833
           + +LN    +    ++ + N +  +  +V  D+K L+ + D L+++I SGII+L G S  
Sbjct: 754 QARLNASKSADLIQQVREQNGIKILSVKVDGDAKGLRELSDTLKQRIGSGIIVL-GTSDA 812

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +A++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+  V
Sbjct: 813 ARANLLVAVTADLSARWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALEAV 870


>gi|197336333|ref|YP_002155293.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|197317823|gb|ACH67270.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 859

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/907 (42%), Positives = 545/907 (60%), Gaps = 68/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 DRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E FG+TL+RG+ LL+  L +L +  +L+G+  FKLYDT+G P D+  D+   R L  ID
Sbjct: 362 EENFGRTLERGMALLNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERDLT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F +A+EEQR RAR A   G       K+          T F GY             
Sbjct: 420 EDGFEKAMEEQRQRAREAGQFGTDYNAVIKV-------ESETVFHGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T   +S++ A+ ++GE V+   +G +  ++ DQTPFYAE+GGQ GD G 
Sbjct: 460 ---------DSTEAKASVI-ALFREGEEVDALSAGDEAILILDQTPFYAESGGQCGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD  K    I  H  +VE G+L      +  +D   R  + +NHSATHLL
Sbjct: 510 ITVETGKFVVTDTHKIGNAIGHHGKLVE-GVLSKADHAMAQVDETRRAAIILNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + + + EL+ +E  VN  I  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    D+KL   AS           + +++ +E ++
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAAS-----------KAKQLEKEIQQ 732

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L+   A ++    +      +IA    +   +   D+K L+ ++D L+ +I SGIIML  
Sbjct: 733 LKDKLASQESASLIN--KVQEIAGTKVLVAQLDGADNKALRGMVDELKNQIGSGIIMLGN 790

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +S E K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG +      A+
Sbjct: 791 VS-EGKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNAL 848

Query: 890 AGVASFL 896
           A V ++L
Sbjct: 849 ASVEAWL 855


>gi|253990685|ref|YP_003042041.1| alanyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253782135|emb|CAQ85299.1| Alanyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 876

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/909 (43%), Positives = 557/909 (61%), Gaps = 55/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT +  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGKDWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D EA+ +W+   G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKEKLWVTVYHTDNEAYDIWQNKVGIPAERIIRIGDNKGVPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A   VTG   + NN  + RVI DH+RS +FLI DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVANVTGATDDLNN-KSLRVIADHIRSCAFLIGDGVIP 302

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG T+     L+  L   MG+A   L   + ++E+ L+
Sbjct: 303 SNENRGYVLRRIIRRAIRHGNMLGATDTFFYKLVAPLIEVMGAAGEGLKHQQAIVEQVLK 362

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L  L  D IL+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 363 TEEEQFARTLERGLQLLDDELVKLSGD-ILDGETAFRLYDTYGFPVDLTADVCRERNIK- 420

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+E QR RAR  S G G+   E I   + E+   + F GYD           
Sbjct: 421 VDEDGFAVAMENQRRRARESS-GFGADYNELI--KVDER---SDFSGYD----------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V AI + GE V +  +G++  V+ D+T FYAE+GGQ+GD+G
Sbjct: 464 ------------HNEQQAKVTAIFRNGESVNQIQAGEEAIVILDKTAFYAESGGQVGDSG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK  + I  H   +E+G L     L   ID + R  + +NHSATHL
Sbjct: 512 ILSNADCAFCVIDTQKYGQAIG-HIGKLEKGTLSVNHELNAVIDVKRRDAIRLNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG HVSQ GS +    LRFD +H + +   +++ +ED VN  I +N  V+T 
Sbjct: 571 LHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAEIRKNSSVITE 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY ++VRV+S+     G  S+ LCGGTH S TG+I L  I +
Sbjct: 631 LMDLEAAKVKGAMALFGEKYEEKVRVLSM-----GNFSTELCGGTHASRTGDIGLFRITA 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEAITG++A   +  Q + L+ +A  +K    N+  +V  I ++ + L+ 
Sbjct: 686 ESGTAAGIRRIEAITGKKALESVYQQFDLLQDIAQLVKGDINNLNDKVRGILDKTKVLEK 745

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827
              + K Q   ++ S    K  +V  +  ++S++++ E   L++++D L+ ++ S II+L
Sbjct: 746 ELQQIKDQNAAQESSSLASKAKEVKGVKLLVSQLNNTEPKTLRTMVDDLKNQLGSAIIVL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             IS + K S+++ VT+DL  R  A +L    A+ + GG GGGRP MAQ+GG +      
Sbjct: 806 STIS-DDKVSLIVGVTKDLTARIKAGELISSIAQQI-GGKGGGRPDMAQAGGSDVKSLPS 863

Query: 888 AIAGVASFL 896
           A+  V  ++
Sbjct: 864 ALDSVEDWV 872


>gi|254360816|ref|ZP_04976963.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261495705|ref|ZP_05992149.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092290|gb|EDN73359.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261308617|gb|EEY09876.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 875

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/905 (42%), Positives = 547/905 (60%), Gaps = 55/905 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G    GGLPGS EE G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +K   N  +  RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLDNKSL--RVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   FN  +  QR RA+A S   G+     I    K     T F GY          
Sbjct: 418 K-IDEDGFNAEMTAQRERAKASS-SFGTDYNNVIKVDSK-----TCFSGY---------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         T+   + V  +   G+ VE   SG+   V+ D+TPFYAE GGQ+GD
Sbjct: 461 ------------TETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK  + +F H   +  G L     +   +D + R  +++NHSAT
Sbjct: 509 SGQISAEICNFEVVDTQKYGQ-VFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD++  + IT ++L+ +E  VN  + +N+ V+
Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY + VRV  VE  D    S  LCGGTHV  TG+I L  I
Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRV--VEMSD---FSIELCGGTHVKQTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RRIEA+TG+ A + L    + ++  A  LK    + V ++ ++ E+ ++ 
Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742

Query: 771 --QLIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +L   K KL      DL+    +I  VN +   +  V+ K L++++D L+ ++ S ++
Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + E K ++++ VT+DL D+ NA  L    A+ + GG GGGRP MA +GG      
Sbjct: 803 VF-ATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860

Query: 886 DQAIA 890
            QA++
Sbjct: 861 LQALS 865


>gi|307132211|ref|YP_003884227.1| alanyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306529740|gb|ADM99670.1| alanyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 875

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/909 (43%), Positives = 553/909 (60%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSPQWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+IDLFK LI  +  V G     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ISAVLQHVNSNYEIDLFKALIAEAASVVGTDDLNNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL + + L+E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIKVMGPAAEELQRQQGLVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL+LLD  +  L K + L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 NEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR RAR  S G G+      + SL     +T F GY+        + D
Sbjct: 420 VDEEGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDESTTFCGYE--------RTD 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           ++               S V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD G
Sbjct: 466 QQ---------------SKVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D QK  + I  H   + +G LR    +   +D+  R ++ +NHSATHL
Sbjct: 511 ELTSAAARFSVADAQKYGQAIG-HIGKLTQGSLRVNDKVDAVVDHVRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN  I +NLPV T 
Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDSYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVETD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A A GA AL G KY + VRV+S+     G  S  LCGGTH   TG+I L  IVS
Sbjct: 630 VMALDAARAKGAMALFGEKYEENVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A   L  Q++ L  +   +K    N+  +V  + E  R L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGENAIVALHHQNDLLHEVTQLVKGDSNNLADKVRSLLERTRGLEK 744

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S    K  D+N +  ++   S V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQQAAQESSSLSSKAKDINGVKLLVTQLSNVEPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K S++  VT++L DR  A +L    A  + GG GGGRP MAQ+GG + +    
Sbjct: 805 STVA-DGKVSLIAGVTKELTDRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALPS 862

Query: 888 AIAGVASFL 896
           A+  + +++
Sbjct: 863 ALTSIEAWV 871


>gi|262369620|ref|ZP_06062948.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262315688|gb|EEY96727.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 892

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/928 (43%), Positives = 538/928 (57%), Gaps = 76/928 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLSYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT E    L +
Sbjct: 64  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTGEAWLALPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 DKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNI---VNHRVIVDHLRSS 282
            VLQ   +NY+IDLF+HL++A+ ++ G+         + +G  +    + +V+ DH RS 
Sbjct: 244 AVLQHVNSNYEIDLFQHLLKAAAEIIGLDTAALEAEAREKGTPVQYPASLKVVADHARSC 303

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           SFLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL  
Sbjct: 304 SFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLQPLIEVMGQAYPELEA 363

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K  IE  L  E+E+F KTL++GL LL+G L+ L K  ++ G+V FKLYDT+G P D+  
Sbjct: 364 QKARIEAQLLKEEEQFAKTLEQGLKLLEGELAQL-KGSVIPGEVVFKLYDTYGFPTDLTA 422

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           DI   R L  ID   F   +  QR RAR       +G     + S+ +  G TQF GY  
Sbjct: 423 DIARERDLT-IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDGY-- 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                               D T G   I+ AI + GE V+E V G +  +V +QTPFYA
Sbjct: 474 --------------------DATVGEGQII-AIYKDGEQVDEVVEGDEALIVLNQTPFYA 512

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GDTG    D    ++ D  KK+ G FVH  IV  G ++   ++  T+    R  
Sbjct: 513 ESGGQIGDTGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTVGSIKLAQNVEATVKADIRAA 571

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHSATHLLH AL  ILG HV Q GS +  D LRFD  + +P++  +L+ IE  VN  
Sbjct: 572 TARNHSATHLLHAALRQILGEHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLVNAE 631

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTH 698
           +  N  V T +++ E A A GA  L G KY D VRV+S    +E ++    S  LCGG H
Sbjct: 632 VIANSAVTTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSIIEEKN---FSIELCGGIH 688

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  I SE  + AG+RRIEA+TG +A       D  + ++   LK  +   + 
Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAIEVTQKADRDINTINGLLKAQKDQTLE 748

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLN--------VEDLS-CHKIADVNFMSHIISEVDSKEL 809
           +VE + +    LQ    K+  QLN         E LS    +A    +   +  +D+K L
Sbjct: 749 KVEALVDTASSLQ----KQIEQLNQKLASFQAAELLSQVQTLAGRQTLITTVQNMDAKSL 804

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +++ D ++ K+++ +I+L G+  + K S++  V +D      A D+ +  A  L GG GG
Sbjct: 805 RNLHDGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLATEL-GGKGG 862

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P +AQ G P   K    +A + ++L+
Sbjct: 863 GKPDLAQGGAPLNEKFATVMADLTAWLE 890


>gi|90408728|ref|ZP_01216876.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310179|gb|EAS38316.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 869

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/888 (43%), Positives = 540/888 (60%), Gaps = 52/888 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + + S IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G E+  Y  
Sbjct: 4   IKSTSEIRQGFLDFFANKGHQVVSSSSLVPANDPTLLFTNAGMNQFKDTFLGSEQRSYVR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E  L
Sbjct: 64  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWEYLTVELGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L+ITVYD+D EA K+W +  G+    + RI   DNFWSM +TGPCGPC+EIF+D G
Sbjct: 124 PKEKLWITVYDKDPEAEKIWIEEIGVDPACLSRIGAKDNFWSMGDTGPCGPCTEIFYDHG 183

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PG+ EE G+RYIEIWNLVFMQ+ +        LPK S+DTGMGLER++ +LQ 
Sbjct: 184 EHIWGGPPGTPEEDGDRYIEIWNLVFMQYNRHADGTMVDLPKPSVDTGMGLERISAILQN 243

Query: 240 KTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +NY+IDLF+ LI+   +VTG    E  ++   RV+ DH+RS  FLI DG++P+NEGRG
Sbjct: 244 CHSNYEIDLFQALIKKVAEVTGATDLEDKSL---RVVADHIRSCGFLICDGVMPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG        +   L  +MG  YPEL + +  +E+ LR E+E+F
Sbjct: 301 YVLRRIIRRAVRHGNKLGAQGVFFFKIYGELILQMGDTYPELGKQRDFVEKILRLEEEQF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RGL +LD  L  L +  +++G+  FKLYDT+G P D+  DI   R L  IDI  F
Sbjct: 361 AKTLVRGLQILDNALESL-EGNVISGETVFKLYDTYGFPADLTADIARERDLI-IDIDGF 418

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N  ++EQR+RA+      G+   + + F  K     TQF+GY+ L+              
Sbjct: 419 NTLMDEQRTRAKKVD-HFGTDYNDGLKFDEK-----TQFLGYEHLQH------------- 459

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGD 537
                     S+ V  +V++GE+V     G+   V+  QTPFYAE+GGQ+GD+G   + D
Sbjct: 460 ----------SATVSILVKEGELVPALNQGEHGHVILKQTPFYAESGGQVGDSGRLVLKD 509

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           GI   +TD +K  +  F+H   VE G +     ++  +D + R+ ++++HSATHLLH AL
Sbjct: 510 GI-FNVTDTKKSGD-TFLHIGYVESGNISVHDEIIAEVDSERRKAIALHHSATHLLHAAL 567

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG HV+Q GS    D LRFD +H + ++S  L+ +   VN  I  N+ V+T++ + E
Sbjct: 568 RQTLGEHVTQKGSLCDADKLRFDFSHFEGLSSQVLEQVNYLVNSAIRDNVSVLTKLSDIE 627

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY++ VRVVS+     G  S+ LCGGTH S TG + L +I SES I 
Sbjct: 628 EAKTAGAMALFGEKYDEMVRVVSM-----GALSTELCGGTHTSRTGNMGLFFIRSESGIA 682

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA  G+ A   L     +       +K    ++  ++ +  E  R L+      
Sbjct: 683 AGVRRIEACVGKAAELALHDVMSQFTKSCELVKGDASSLSDKILQTLERNRALEKELHTL 742

Query: 778 KLQLNV---EDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGIS 831
           K+++      DL  + I  +N +  +I++   +D K L+  +DA++ K+QSGI++L    
Sbjct: 743 KIKMAASAGSDLVANAII-INGVKVVIADLPGIDPKSLRDSVDAMKNKMQSGIVVLGTAV 801

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + K S+++ VT+DL  +  A +L  + A  + GG GGGRP MA +GG
Sbjct: 802 ADDKVSLIVGVTKDLTKKVKAGELVNVVAAPV-GGKGGGRPDMAMAGG 848


>gi|160899488|ref|YP_001565070.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|205830045|sp|A9C0B9|SYA_DELAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160365072|gb|ABX36685.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 874

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/907 (42%), Positives = 536/907 (59%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y+  T
Sbjct: 7   TVADIRKSFLDFFASKGHTIVESSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYKRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L +
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS  E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGAHVAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T +        + +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAARETHIA--DIETPSLKVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP++ + +  I E LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVAVMGDAYPKIREQEARITEVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RGL+ +D
Sbjct: 365 EERFFETLANGMEILDAALA--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGLS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+EEQ+++ARA           K+  +L+    A  F GY  L       E  K
Sbjct: 422 EAGFQTAMEEQKNKARAAG-------KFKMDRALEYTGDANAFTGYQKL------AEAAK 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V+                 A+  +G  V+E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 VV-----------------ALYAEGSAVQELKAGQSGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D Q R     NHS TH++H
Sbjct: 512 STAGARFAVEDTLKIKADVFGHHGVLESGSLKVGDAVQAEVDTQLRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H++P+T+ E++ IE  VN  I  N P   R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNQPVTAEEIREIERRVNAEILANTPTDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A A+GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +V E 
Sbjct: 632 DIESAKATGAMMLFGEKYGDSVRVLDIG------SSRELCGGTHVQRTGDIGLFKVVGEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    E+ R L  ++
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKEV 745

Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+ +  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT+    R  A DL    A  + GG GGG+P MA +GG + +    A+
Sbjct: 806 VDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAAL 863

Query: 890 AGVASFL 896
           AGV +++
Sbjct: 864 AGVHAWV 870


>gi|94987623|ref|YP_595556.1| alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|205830129|sp|Q1MP42|SYA_LAWIP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94731872|emb|CAJ55235.1| Alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 884

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/896 (41%), Positives = 523/896 (58%), Gaps = 45/896 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  V+ IR  FL +F+   H+ +PSSSLIP +DP+L+FTN+GMV FK +FTGQE   Y  
Sbjct: 1   MLTVNDIRQKFLGYFKNYNHQEIPSSSLIPRDDPSLLFTNAGMVQFKKVFTGQETRNYLR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW  +T+E +L
Sbjct: 61  ATTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQFAWAFITEELNL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            +  LYIT+Y +D++A+ +W    G+   +I R+   DNFWSM +TGPCGPCSEI FDQG
Sbjct: 121 SKEFLYITIYKDDDDAYDIWVNTIGVEPSRIYRMGEKDNFWSMGDTGPCGPCSEIHFDQG 180

Query: 181 E--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E  C        S + +R++EIWNLVFMQ+EQ    ER ILPK SIDTGMGLER+  + Q
Sbjct: 181 ETFCCGDNCGIGSCDCDRFLEIWNLVFMQYEQLPSGERVILPKPSIDTGMGLERIVAICQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +K++NYD DLF+ +IQ    + G+ Y+ +    +  RVI DH R+ +F+IADGILP+NEG
Sbjct: 241 QKSSNYDTDLFQPIIQYMASIAGVHYKKHEETDIALRVIADHSRAIAFMIADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + +G  +P +   +  +   MG  Y EL      +   +  E+E
Sbjct: 301 RGYVLRRLIRRAFRFGKQIGMNQPFLYKTVNKVVELMGDIYTELYSRSEFMSRVVFDEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TLD+GL+LL+  L+ L +     L GD+AFKLYDT+G PLDI+ DI   +  A +D
Sbjct: 361 RFSITLDKGLILLEAELNALKEKNTKELPGDIAFKLYDTYGFPLDIINDIASKKHFA-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F   ++EQ+ RAR+   G G    E  + +L E    ++FIGY+ L G+        
Sbjct: 420 EANFQHLMQEQKERARSQWKGSGEKRIEACFQTLLEDGMQSEFIGYENLSGT-------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                           IV  +   G  +EE  +     V+ D TPFY  +GGQ GD G  
Sbjct: 472 --------------GRIVALLDIDGLPIEELPTKSSGYVITDMTPFYGTSGGQTGDIGIL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                + Q+ D  K A  + VH   V  G +  +   +L +    R   + NH+ TH+L 
Sbjct: 518 STITGKTQVVDTLKPATNLIVHVVTVTSGTILLDQEALLVVSESERLDTARNHTCTHILQ 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  ILG HV Q GS ++P  LRFD TH  P+T  E+ +IE  VN II  NLP+    M
Sbjct: 578 SVLQKILGDHVRQAGSLVSPTRLRFDFTHIAPLTEEEIHAIELQVNTIIMANLPLRVEFM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +++ A+  GA AL   KY + VRVV++  E+    S  LCGGTH++STG+     IVSE+
Sbjct: 638 DQQSALEKGAMALFEEKYGNIVRVVTIGSEN-QTASIELCGGTHLTSTGQAGCFIIVSET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEAITG+   +++    ++L + A+ LK     VV +V  I  E + LQ   
Sbjct: 697 GIAAGVRRIEAITGRNTLAYIKEYQKELSTTAAILKTKPEKVVEKVTSILSENKNLQ--- 753

Query: 775 AKRKLQLNVEDLSCH---------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            K    L    LS           +I +++ ++  +     K L+ +MD ++ K+ SGI+
Sbjct: 754 -KTVDTLESSSLSNQGKHLLDNLTRINNIDVLTANLKNFSLKALRDIMDDIRSKLSSGIV 812

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            L   ++  K  +L+ V++DL   F A +L +    V   G GGGRP  AQ+GG N
Sbjct: 813 CLAS-TEGTKVHLLLYVSKDLHHNFTASELIK-KIVVPIHGAGGGRPDQAQAGGTN 866


>gi|299067646|emb|CBJ38855.1| alanyl-tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 888

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/915 (42%), Positives = 545/915 (59%), Gaps = 59/915 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   T+
Sbjct: 11  ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRSYTRATS 70

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L   
Sbjct: 71  VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 130

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEIF
Sbjct: 131 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 190

Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230
           +D G  I GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMGL
Sbjct: 191 YDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG+
Sbjct: 251 ERLAAILQHVHSNYEIDLFEALIAAASRETNTKDLSNNSL--RVIADHIRACSFLIVDGV 308

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL  A+  + + 
Sbjct: 309 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVVQMGEAYPELRDARDRVVDV 368

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR+E+ RF +T++ G+ +LDG L  L      +L+G++AFKL+DT+G PLD+ QD+ C  
Sbjct: 369 LRTEEARFFETIEHGMSILDGALGELKASGANMLDGELAFKLHDTYGFPLDLTQDV-CRE 427

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               +D  +F+ A+  QR +ARA      +G  +    +L      T F GYD L     
Sbjct: 428 NDVIVDEAAFDAAMNRQREQARA------AGKFKMAVGTLDYTGDKTTFHGYDQL----- 476

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           ++E                 ++ V A+   G  V+    GQ   VV D TPFYAE+GGQ+
Sbjct: 477 VRE-----------------TARVTALFVDGASVDAMQPGQTGVVVLDHTPFYAESGGQV 519

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G      +   + D QK    +F HH  +  G+L+   ++   +D   R +   NHS
Sbjct: 520 GDQGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAARRARTMRNHS 579

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N  
Sbjct: 580 ATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANAA 639

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L 
Sbjct: 640 TNAQVMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGLF 693

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ +
Sbjct: 694 KIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQVK 753

Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+++ 
Sbjct: 754 TLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKTA 813

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            I+L  +S + K +++  VT D   R  A +L    A+ + GG GGGRP MAQ+GG   +
Sbjct: 814 AIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPD 871

Query: 884 KADQAIAGVASFLKK 898
           K  QA+AGV +++++
Sbjct: 872 KLPQALAGVTAWVQQ 886


>gi|149927912|ref|ZP_01916162.1| alanyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149823351|gb|EDM82584.1| alanyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 878

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/913 (42%), Positives = 542/913 (59%), Gaps = 58/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FL+FF   GH  + SSSL+P NDPTL+FTNSGMV FK++FTG++K  Y   T+
Sbjct: 3   VADIREKFLDFFASKGHTKVASSSLVPGNDPTLLFTNSGMVQFKDVFTGKDKRAYTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+LLT  + L   
Sbjct: 63  SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIQYAWELLTTVYKLPPE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           RLY+TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPC+EIF
Sbjct: 123 RLYVTVYQEDDEAYNIWNKQVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCTEIF 182

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G  + GG PGS +E G+RYIE+WNLVFMQF++        LPK  +DTGMGLER+A 
Sbjct: 183 YDHGPEVWGGPPGSEQEDGDRYIEVWNLVFMQFDRTADGVLHPLPKPCVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293
           VLQ   +NY+IDLF+ LI+A+ +    +     + N+  RVI DH+R+ SFL+ DG++P 
Sbjct: 243 VLQHVHSNYEIDLFQTLIKAAAREVTAQGNAVELTNNSLRVIADHIRACSFLVVDGVIPG 302

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +P    L+  L +EMG AYPEL +A   ++  L++
Sbjct: 303 NEGRGYVLRRIIRRAIRHGYKLGCRKPFFNALVGDLVSEMGEAYPELAKAAAQVQSILKA 362

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +T++ G+ +LD  L  L K  +L+G+ AFKL+DT+G PLD+  D+   R ++ +
Sbjct: 363 EEERFFETIENGMAILDSALGALPKGGMLDGETAFKLHDTYGFPLDLTADVCREREMS-V 421

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F++A+ +Q+ +ARA           K+   L      T+F GYD L  +       
Sbjct: 422 DEAAFDEAMNKQKQQARAAG-------KFKMDADLAYSGVVTEFKGYDALEVA------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          ++ + AI   G  V    +GQ+  VV DQTPFYAE+GGQ+GD G 
Sbjct: 468 ---------------NATITAIYVNGTSVNSIAAGQQGVVVLDQTPFYAESGGQVGDQG- 511

Query: 534 AIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            I +G       ++ D QK    +F HH  +  G L+   ++   +D   R +   NHSA
Sbjct: 512 EISNGSACLNLFRVLDTQKIQANVFGHHGELVTGELKVGDAVGAQVDQYQRNRTIRNHSA 571

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG HVSQ GS +  +  RFD  H   +T  ++  +E  VN+ I  N   
Sbjct: 572 THLMHKALREVLGDHVSQKGSLVDAEKTRFDFAHHSAMTPEQIAQVERIVNEEILANAET 631

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             RIM+ E A ++GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  
Sbjct: 632 QARIMDIESAKSAGAMMLFGEKYGDTVRVLDIG------SSRELCGGTHVQRTGDIGLFK 685

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SES + AGIRR+EA TG  A         +++++A  L+V       ++ +I ++ + 
Sbjct: 686 ITSESGVAAGIRRVEATTGLGAMEFAQKAQAQVEAIAQSLRVPATEATAKIGQIMDQVKN 745

Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L   K KL  +  D    +  D++    ++  +   D K+L+   D L+ K+ +  
Sbjct: 746 LEKELDRLKSKLAASQGDDLAGQAVDIDGVKVLAAKLEGADVKQLREAADKLRDKLGNAA 805

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L  +  E K S++  V++D   +  A DL    A+ + GG GGGRP MAQ+GG     
Sbjct: 806 LVLATVL-EGKVSLIASVSKDATAKVKAGDLVNFVAQQV-GGKGGGRPDMAQAGGTQPEN 863

Query: 885 ADQAIAGVASFLK 897
            D A+A V  ++K
Sbjct: 864 LDAALASVVDWVK 876


>gi|39995259|ref|NP_951210.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|48428506|sp|P61701|SYA_GEOSL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39982021|gb|AAR33483.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298504264|gb|ADI82987.1| alanyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 875

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/902 (42%), Positives = 548/902 (60%), Gaps = 45/902 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF   GH ++PSS LIP NDPTL+F N+GM  FK+ F G EK  Y    + QK
Sbjct: 6   IRARFLKFFADRGHAVVPSSPLIPHNDPTLLFANAGMNQFKDCFLGLEKRDYVRACSSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD+ RLY
Sbjct: 66  CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDKDRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY +D+EA  +W    G+  ++I R    DNFW+M +TGPCGPCSEIF+D G  +  G
Sbjct: 126 VTVYTDDDEAADIWHLQEGVPRERIYRFGEKDNFWAMGDTGPCGPCSEIFWDNGPEVGCG 185

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER++TV+Q   +NY
Sbjct: 186 SPDCAVGCDCDRYMEIWNNVFMQFNRSADGVLTPLPKPSVDTGMGLERISTVMQGVKSNY 245

Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D DLF+ +I   E+++G +Y  +  + V+ RV+ DH+R+++FLI DG+LP+NEGRGYVLR
Sbjct: 246 DTDLFQGIIGHVEKLSGKRYRHSEKDDVSMRVMADHVRATTFLICDGVLPSNEGRGYVLR 305

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RIMRRA  +A++LG+ EP++  ++ A+   MG AYPEL++ +  I + +R+E+ERF +TL
Sbjct: 306 RIMRRAARHAKMLGFAEPVICRMVEAVNAMMGDAYPELLEREEYIRKVIRAEEERFAETL 365

Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           DRGL +L+  ++ L  +   ++ G+  F+LYDT G P D+  DI+ + G   ID   F  
Sbjct: 366 DRGLAILNEAVADLKNEGRTVIPGETLFRLYDTFGFPTDLTADIVRSEGFT-IDEDGFEA 424

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR +AR H  G G     ++  +L  +   ++F GY+                   
Sbjct: 425 CMERQREQAREHWKGSGEEGIAEVHKTLHSRGVRSRFTGYE------------------- 465

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    S V  +++ G  V EA +G +VE++ D TPFY E+GGQ+GDTG        
Sbjct: 466 ----ARTAYSPVTVLLKGGAEVAEATAGDRVEIITDATPFYGESGGQVGDTGTISTGSAH 521

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++T+  +    + VH   V  G +R   +  L +    R   + NH+ATHLL  AL  +
Sbjct: 522 VEVTETLRPFPDLIVHRGTVVEGTIRQGDACDLKV-APGRDATARNHTATHLLQSALRQV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q+GS + PD LRFD TH   +T  E++ +E+ VN  I  N  V  R M  ++A+
Sbjct: 581 LGDHVKQSGSLVGPDRLRFDFTHFAAMTPEEIRRVEEIVNSCIMANDDVHAREMALDEAM 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRVV V     G  S  LCGGTHV + G+I    I+SE+ I AG+
Sbjct: 641 EIGATALFGEKYGDTVRVVRV-----GEVSMELCGGTHVHAAGDIGFFKILSEAGIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A  H+   +++ K +A+ +K   G+ V R++ +    + +Q      + +
Sbjct: 696 RRIEALTGMGALRHVQQLEDERKEIAALIKAEGGDNVERLQRLLTRQKDMQREIETLESR 755

Query: 781 LNVEDLSCHKIADVNFMSHI-----ISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEK 834
           LN    S   +ADV  ++ +     ++EVD  K+L+ + D L+ ++ SG++ L G  KE 
Sbjct: 756 LNAA-RSADLLADVREVNGVKVLATLAEVDDPKKLRELADTLKDRLGSGVVAL-GCVKEG 813

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           KA++L+ VT+DL  R  A DL R  + ++ GG GGG+P +AQ+GG   +K  +A+  V  
Sbjct: 814 KANLLVAVTKDLTGRVKAGDLIRQLSPII-GGSGGGKPELAQAGGTLPDKLGEALGKVCE 872

Query: 895 FL 896
            +
Sbjct: 873 LV 874


>gi|254480113|ref|ZP_05093361.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214039675|gb|EEB80334.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 866

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/883 (44%), Positives = 551/883 (62%), Gaps = 50/883 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL++F+++ H+ + SSSL+P +DPTL+FTN+GMV FK+ F G +   Y   T+ Q+
Sbjct: 6   IREAFLDYFEQHEHQRVASSSLVPGDDPTLLFTNAGMVQFKDTFLGNDPRSYVRATSSQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT    L   RL+
Sbjct: 66  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWNFLTGTLGLPPERLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T +  D+EA +LW    G   ++I R+   DNFW M +TGPCGPC+EIF+D G  +PGG
Sbjct: 126 VTCHVSDDEAEELWVNEIGFPRERITRL-DEDNFWQMGDTGPCGPCTEIFYDHGPDVPGG 184

Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            PGS EE  +RYIEIWNLVFMQF + +  +   LP  S+DTGMGLER+A V+Q+  +NY+
Sbjct: 185 PPGSPEEDMDRYIEIWNLVFMQFNRDSSGKMHPLPAPSVDTGMGLERIAAVMQQVHSNYE 244

Query: 246 IDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           IDLF+ LI+++  +  +   E N++   RVI DH+RS +FLIADG+LP NEGRGYVLRRI
Sbjct: 245 IDLFQALIKSAASILDVDDLEHNSL---RVIADHIRSCAFLIADGVLPGNEGRGYVLRRI 301

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +   LG T+P    L   L  EMG AYPEL++ +  IE+ L +E+E+F KTLD 
Sbjct: 302 IRRAVRHGNKLGATQPFFFQLTATLAKEMGGAYPELVKLQPQIEKALLTEEEQFAKTLDN 361

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ +L+  L+ L  DEI  GDV FKLYDT G P+D+  DI   R L  +DI  ++ A+ +
Sbjct: 362 GMQILEEALAGLQGDEI-PGDVVFKLYDTFGFPVDLTNDIARERELR-LDIAGYDAAMAQ 419

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           QR+R++        G + K+ ++   K  G+T+F GYD LRG                  
Sbjct: 420 QRTRSQ-------EGGSFKLDYNDALKLEGSTEFTGYDSLRG------------------ 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   V A+++ GE V+   + +   VV   TPFY E+GGQ+GDTG    +G++L++
Sbjct: 455 -----EGTVTALLKDGEEVDFLGTDESGIVVLSSTPFYGESGGQVGDTGYITAEGLKLEV 509

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           T+   KA    +HH     G +R    +   +D   R++  +NHSATHLLH AL ++LG 
Sbjct: 510 TNT-TKASDQHLHHVNTLTGTIRQGDIVHSVVDDSLRQRTRLNHSATHLLHSALRSVLGD 568

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +  + LRFD +H + +T  ELK IE  VND +  N  V TR+M+ ++AI +G
Sbjct: 569 HVQQKGSLVDSERLRFDFSHFEGVTGEELKRIESIVNDQVRANTEVSTRVMSMDEAIEAG 628

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRV+S+  E G   S  LCGGTHV+ TG+I L+ I SES + AG+RRI
Sbjct: 629 ATALFGEKYGDEVRVLSMG-EAG--FSVELCGGTHVARTGDIGLMRITSESGVAAGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E +TG  A   +   +  L ++   +K +  NV  +V  + +E R+L+   A+ K +L  
Sbjct: 686 EGVTGAGALGQIDVTERYLAAVCDVVKGNSVNVADKVAGLRQENRELEKEVARLKQKLAT 745

Query: 784 ---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               DL+    ++A +  ++  +   D+K L+ V+D ++ K+ SG+I+L  ++ +K A +
Sbjct: 746 GAGTDLTAAAVEVAGIKVLAVNVEGADAKSLRDVLDQVKNKLGSGVILLSAVTDDKVA-L 804

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              VT+DL D+  A DL R  A  L GG GGGRP MAQ GG +
Sbjct: 805 TAGVTKDLTDKIKAGDLMREFATRL-GGKGGGRPDMAQGGGSD 846


>gi|126667522|ref|ZP_01738492.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627948|gb|EAZ98575.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 876

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/912 (43%), Positives = 562/912 (61%), Gaps = 58/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FLE+F + GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   T+
Sbjct: 3   TAELRQAFLEYFNQQGHAIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREQRDYTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L 
Sbjct: 63  SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWNFLTSEQWLNLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L+ITVY ED+EAF +W +  G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KTKLWITVYAEDDEAFDIWNQEIGVPAERIVRIGDNAGGRYSSDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G  + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLER+
Sbjct: 183 IFFDHGPDVAGGPPGSPDEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLERV 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
             VLQ   +NY+IDLF+ L++A+  V G         + RV+ DH+RS  FLI DG++P+
Sbjct: 243 TAVLQGVHSNYEIDLFQDLLKAASDVLGGV--ATTEASLRVVADHIRSCCFLIGDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRG+VLRRI+RRA  +   LG   P    L+ AL   MG A+P+L+ +   IE+ L  
Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGANGPFFYKLVGALVELMGEAFPQLVSSHKQIEKVLLQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD GL LL+  ++ L K +++ G+  F LYDT+G P+D+  DI   RGL  +
Sbjct: 361 EEEQFVKTLDNGLRLLEQDIAEL-KGDVIPGETVFALYDTYGFPVDLTNDIARERGLT-L 418

Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   + +A+E QR RARA S  G+          SLK + G T+F GY  + G + ++  
Sbjct: 419 DYQGYEKAMEAQRERARAASKFGIDYNAE-----SLKLE-GVTEFSGYQNIDGHERIR-- 470

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S IV +  +  E  +EA+      +V ++TPFYAE+GGQ+GDTG
Sbjct: 471 ----------------SVIVGSEHKNAEAGDEAI------IVLERTPFYAESGGQVGDTG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G R Q+TD +K+     +H   V  G L   + +   ID++ R +   NHSATHL
Sbjct: 509 LLTWSGGRFQVTDTRKEGNN-HLHIGTVVEGELFPGLEVDARIDHERRERTKRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HVSQ GS + PD LRFD +H + +++A+L+ IE  VN  I +N  V T 
Sbjct: 568 LHAALRKVLGEHVSQKGSLVDPDKLRFDFSHLEAVSAADLQEIERQVNQQILENTSVATE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + + E A A GA AL G KY D VRV+S+   DG  +S  LCGGTHV+ TG+I L+ I S
Sbjct: 628 VTDMEQAQAKGALALFGEKYGDSVRVLSMG-SDG--YSVELCGGTHVNRTGDIGLMRITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES I +G+RRIEA+TG  A   +   +  L+  A  +K S+ ++V +V++  +  R+L  
Sbjct: 685 ESGIASGVRRIEAVTGFGALEWVGSAERTLREAARLVKGSRESLVEKVQQTLDRNRQLEK 744

Query: 771 QLIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   K KL  +   DL  S  ++A +  ++  +   D + L    D L+ K+  G+++L
Sbjct: 745 EIDGLKAKLASSAGSDLASSAVEVAGLRVVAAEMPGADRQALMETADQLKNKLGEGVVVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + ++ K +++  VT+    R  A D+ + L A++   G GGGRP MAQ GG + ++  
Sbjct: 805 ASV-EDGKVTLVSGVTKSATGRVKAGDIMKHLCAQL--DGKGGGRPDMAQGGGNDASRLT 861

Query: 887 QAIAGVASFLKK 898
           + +AGVA +++K
Sbjct: 862 EVLAGVAGWVEK 873


>gi|86146326|ref|ZP_01064650.1| alanyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85835805|gb|EAQ53939.1| alanyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 860

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/916 (42%), Positives = 543/916 (59%), Gaps = 81/916 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF++W K  G+ ADKI+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G     N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAADELKKQQELVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+E QR RAR A   G     T K+  +       T+F GY    G       
Sbjct: 420 DEEGFEKAMEAQRKRAREAGQFGTDYNATIKVDTN-------TEFCGYTGTEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------AGEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +  T+D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVQDTQKLGNA-FAHHGELVEGVFAQGDKVEATVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           E  I AGIRRIEA+TG+ A   +  Q    +EKL   A   K  +              +
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKSLE--------------K 729

Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++QL+  K        +   VE++S  K+     +   I   D+K L++++D  + ++ S
Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGS 784

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GII++  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + 
Sbjct: 785 GIILIANVA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDV 842

Query: 883 NKADQAIAGVASFLKK 898
               +A+  V  +L++
Sbjct: 843 EALPEALKSVRIWLEE 858


>gi|82701157|ref|YP_410723.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123545319|sp|Q2YD40|SYA_NITMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82409222|gb|ABB73331.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 862

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/902 (42%), Positives = 544/902 (60%), Gaps = 53/902 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FLEFF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y    + 
Sbjct: 4   SEVRQKFLEFFETHGHTIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRAASA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    + + R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAIRFAWEFLTDILKIPRER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECI 183
           L+ITVY ED+EA  +W    G+ + +  RI T DNFW M +TGPCGPCSEIF+D   E  
Sbjct: 124 LWITVYAEDDEAADIWLNEVGIDSSRFTRIATQDNFWQMGDTGPCGPCSEIFYDHGPEIP 183

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G     + +G+RY+EIWNLVFMQ+ + +      LP+ S+DTGMGLER++ V+Q+  +N
Sbjct: 184 GGPPGTPNADGDRYVEIWNLVFMQYNRDSAGTLHPLPRPSVDTGMGLERISAVMQQVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF+ LI+A+ + T      ++ +N  VI DH+R+ SFLIADG++P NEGRGYVLRR
Sbjct: 244 YEIDLFQQLIKAAARATNTTDLSSSSLN--VIADHIRACSFLIADGVIPGNEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  +P    L+  L + MG AYPEL++AK  +   L+ E+ERF +TL+
Sbjct: 302 IIRRAIRHGYKLGQKQPFFHQLVEDLASVMGQAYPELMEAKTRVSAVLKQEEERFAETLE 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +L+  L     D +L+G+  F+LYDT G PLD+  DI   RG+A ID   F+QA+E
Sbjct: 362 NGMQVLEAALRR--GDRMLDGETLFRLYDTFGFPLDLTADIARERGIA-IDEAGFDQAME 418

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYG--ATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +QR RAR         TT K        Y   +T F GY+ LR      ++ +VL     
Sbjct: 419 QQRERAR---------TTSKFIMQEAIAYSGPSTTFHGYESLR------QEGQVL----- 458

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                       AI ++G  VE   +G +  +V D+TPFYAE+GGQ+GD+G  +      
Sbjct: 459 ------------AIYKEGSRVEFIEAGDEAVIVLDKTPFYAESGGQVGDSGELLAANGTF 506

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + D QK    +F H  ++  G L T  +++  +D   R +   NHS THL+H AL  +L
Sbjct: 507 AVADTQKIQADVFGHKGLLRSGRLATGDAVLAEVDRAARARTERNHSVTHLMHKALREVL 566

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS +  +  RFD  H++P+T AE++ +E  VN  I  N     R+M  EDA  
Sbjct: 567 GHHVQQKGSLVDANKTRFDFAHNQPVTDAEIRKVEMLVNAEILANAATEARMMAIEDAKK 626

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA  L G KY+D VRV+ +        S  LCGGTHV  TG+I L  IV+ES + AG+R
Sbjct: 627 SGAMMLFGEKYSDEVRVLDIGT------SRELCGGTHVKRTGDIGLFKIVAESGVAAGVR 680

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKL 779
           R+EA+TG+RA +++  Q+ +L+ +A+ +K    +   R+ +I +  + L  +L   K KL
Sbjct: 681 RVEAVTGERALTYIQEQELQLQRVAAAVKAQPQDAAARITQILDNVKHLERELGRMKSKL 740

Query: 780 QLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             +  D    ++ +   V  ++  + E D K L+  +D  + K +S + +L  + ++ K 
Sbjct: 741 ASSQGDDFADRVREIKGVKVLAVCLEEADPKTLREAVDKFKNKFKSCVTVLAAV-EDGKV 799

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++  VT DL  R  A DL    A+ + GG GGGR  +AQ+GG   +    A+  VAS++
Sbjct: 800 KLIAGVTSDLTARLKAGDLVNFVAQQV-GGKGGGRADLAQAGGTVPDSLPAALESVASWV 858

Query: 897 KK 898
           ++
Sbjct: 859 EQ 860


>gi|94263078|ref|ZP_01286897.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93456621|gb|EAT06729.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
          Length = 925

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/909 (41%), Positives = 551/909 (60%), Gaps = 40/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + ++IR  FL++F    H ++ SS+L+P +DPTL+FTN+GMV FK +FTG+E+  Y+ 
Sbjct: 45  MMDGNTIRQKFLDYFASRQHTVVASSALVPHDDPTLLFTNAGMVQFKKVFTGEEQRDYRR 104

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAWD LT+E  L
Sbjct: 105 AVSCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWDFLTRELGL 164

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               L+++VY++D+EA ++W+ I GL   +I+R+   DNFW+M +TGPCGPCSEI  DQG
Sbjct: 165 SPANLWVSVYEDDDEAHRIWEGIEGLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHLDQG 224

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +P   P  G   + +R++EIWNLVFM++E+        LP+ SIDTGMGLER+A V+Q
Sbjct: 225 AAVPCQSPECGVDCDCDRFLEIWNLVFMEYERGADGTMKPLPRPSIDTGMGLERIAAVVQ 284

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEG 296
            K NNYD DLF  LI  + ++ G++Y  +  V+   RVI DH R+++FL+ADG+LPANEG
Sbjct: 285 GKHNNYDSDLFLPLIHRTCELAGVEYGRSARVDTALRVIADHARATTFLVADGVLPANEG 344

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR+MRRA+ + R LG +EP +  +   +   MG AY  L  ++ L+ + +R E+E
Sbjct: 345 RGYVLRRVMRRAIRFGRGLGLSEPFLGEVCATVLETMGGAYSHLEASRELLRKVVRHEEE 404

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD GL +L   L+ L +  +  L G+  FKLYDT+G P+DI +D+    GLA  D
Sbjct: 405 RFLETLDHGLGMLAAELTRLKESGERGLAGEFIFKLYDTYGFPVDIAKDVAQEEGLAA-D 463

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F +A+  QR ++R    G G G     +  L E   +T+F+GY   R          
Sbjct: 464 EAGFEEAMARQRQQSRQSWKGGGLGELGPGFRELLEGGVSTEFVGYQSRR---------- 513

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                 P+     V          G+++  A +GQ+V +V  QTPFYAE GGQ+GD+G  
Sbjct: 514 ---HHAPLTALLDVD---------GKMLNTATAGQQVVLVCSQTPFYAEGGGQIGDSGEI 561

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G   R ++ +  +  E +  H A V  G L     ++L +    R++++ +H+ATHLLH
Sbjct: 562 TGLHGRARVDNTIRVGEQLVAHQAEVVEGRLERGEEVLLAVGEGRRQRVAAHHTATHLLH 621

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P  LRFD TH  P+ +A ++ +E  VN  I  N  + T ++
Sbjct: 622 AALRRVLGEHVKQAGSLVEPGRLRFDFTHFSPLGTAAIREVERLVNVEIRANNSLETAMV 681

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           NR++A+ SGAAAL G KY + VRVV+V     G  S  LCGGTHV +TGEI L  I++E+
Sbjct: 682 NRDEALQSGAAALFGEKYGETVRVVTV-----GEFSKELCGGTHVGATGEIGLFRIIAEA 736

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I A  RRIEA+ G+ A       +++  +LA  LK   G + GR++++    ++L+   
Sbjct: 737 GIAASTRRIEAVCGEEALYRCQQLEDEWAALAGRLKCGPGELAGRIDKLLARQKELERKL 796

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+   Q +  DL        +I     ++  +     K L+ + D ++ K+ S  I ++ 
Sbjct: 797 AQMASQASGFDLERELSRVREIGGARLLACRVPADSVKTLRELGDKVRDKLGSTGIAVLA 856

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + + ++L +V ++L  R+ A +L +  A ++ GG GGGRP MAQ+GG +    DQA+
Sbjct: 857 AEIDGQVALLALVGKELQGRYKAGELVKQVAALV-GGKGGGRPDMAQAGGGDPAGIDQAL 915

Query: 890 AGVASFLKK 898
           A V   ++K
Sbjct: 916 AAVPEIVEK 924


>gi|59711143|ref|YP_203919.1| alanyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|71657966|sp|Q5E7G5|SYA_VIBF1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|59479244|gb|AAW85031.1| alanyl-tRNA synthetase [Vibrio fischeri ES114]
          Length = 859

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/910 (42%), Positives = 547/910 (60%), Gaps = 74/910 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 DRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E FG+TL+RG+ +L+  L +L +  +L+G+  FKLYDT+G P D+  D+   R L  ID
Sbjct: 362 EENFGRTLERGMAILNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F +A+EEQR RAR A   G       K+          T F GY             
Sbjct: 420 EDGFEKAMEEQRQRAREAGQFGTDYNAVIKV-------ESETVFHGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T   +S+V A+ ++GE V+   +G    ++ DQTPFYAE+GGQ GD G 
Sbjct: 460 ---------DSTEAKASVV-ALFREGEEVDALSAGDDAILILDQTPFYAESGGQCGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD  K    I  H  +VE G+L      +  +D   R  + +NHSATHLL
Sbjct: 510 ITVETGKFVVTDTHKIGNAIGHHGKLVE-GVLSKADHAMAQVDETRRAAIILNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + + + EL+ +E  VN  I  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    D+KL   AS           + +++ +E ++
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAAS-----------KAKQLEKEIQQ 732

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIM 826
           L     K KL         +K+ ++     +++++D   +K L+ ++D L+ +I SGIIM
Sbjct: 733 L-----KDKLASQESASLINKVQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIM 787

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +S E K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 788 LGNVS-EGKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALP 845

Query: 887 QAIAGVASFL 896
            A+A V ++L
Sbjct: 846 NALASVEAWL 855


>gi|312884640|ref|ZP_07744343.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367732|gb|EFP95281.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 860

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/912 (42%), Positives = 549/912 (60%), Gaps = 73/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLQFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   L +
Sbjct: 64  SSQRCLRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIAFAWEFLTEILKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W +  G+ AD+I+RI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFNIWNQQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V  ++   N  +  RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEVISVEDLSNQSL--RVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGTFFFKLVGVLADVMGSAGEELKRQQALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L     D+ L+G+  FKLYDT+G P D+  D+   RG   I
Sbjct: 362 EEENFGRTLERGMAILNDALD-ASADKTLDGETVFKLYDTYGFPADLTNDVARERGFI-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+E QR RAR  +   G+   E I         AT+F GY             
Sbjct: 420 DEAGFEQAMEVQRQRAR-DAGQFGTDYNEAIKVD-----SATEFCGY------------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      +      V A+  +   VE   +G K  +V D+TPFYAE+GGQ GD+G 
Sbjct: 461 ----------TSTSALGTVDAMFVESRQVESLSAGDKAVLVLDETPFYAESGGQCGDSGQ 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     + D QK    I  H+  ++ G+L ++  +   +D   R  +S+NHSATHLL
Sbjct: 511 ICTDSGIFVVEDTQKLGNAI-AHYGWMKEGVLASKDKVEALVDKGRRNAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD +H + +T+ E+K +E  VND +  N  V T I
Sbjct: 570 HAALRKVLGEHVTQKGSLVKADNLRFDFSHLEAMTADEIKQVERLVNDHVRLNHDVETDI 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A + GA AL G KY+D+VRV+S+     G  S+ LCGG HVSSTG+I L  I SE
Sbjct: 630 MDIESAKSKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHVSSTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           S I AGIRRIEA+TG  A   +  Q    +EKL   A            + + + +E +K
Sbjct: 685 SGIAAGIRRIEAVTGDAALDVIEAQHQQYEEKLAESAQ-----------KTKALEKEIQK 733

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
           L     K K+          ++ +VN +  +++++   DSK L++++D ++ ++ SG+++
Sbjct: 734 L-----KDKMAAAESANIMGQVKEVNGVKVLVAKLEGADSKNLRTMVDDIKNQLGSGVVL 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++++ K  ++  VT+DL+    A +L ++ A+ + GG GGGRP MAQ+GG +     
Sbjct: 789 LANVNQD-KIGLIAGVTKDLVGDVKAGELVKMVAEQI-GGKGGGRPDMAQAGGTDVTALP 846

Query: 887 QAIAGVASFLKK 898
            AI  V  +L++
Sbjct: 847 TAIDSVQPWLEE 858


>gi|260773533|ref|ZP_05882449.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612672|gb|EEX37875.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 860

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/905 (42%), Positives = 546/905 (60%), Gaps = 59/905 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTEVVKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY  D+EAF +W +  G+  D+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 ERLLVTVYQTDDEAFNIWHQQIGIPQDRIIRIGDKPGGKAYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PGS+EE G+R+IEIWN+VFMQF +    +   LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGPPGSAEEDGDRFIEIWNVVFMQFNRHADGKMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + + Q   +NY+ID+F+ LI+A+ +V G +   N  +  RV+ DH+RS +FLI DG++P+
Sbjct: 244 SAITQGVHSNYEIDVFQTLIKAAAEVIGYQDLANQSL--RVVADHIRSCAFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVAPLAEVMGSAGEELKRQHALVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L  + +  +L+GD  FKLYDT+G P D+  D+   RG   I
Sbjct: 362 EEENFGRTLERGMAILNDALDAV-EGSVLDGDTVFKLYDTYGFPADLTNDVARERGFT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQR RAR       +G     + SL +  G T+F GY             
Sbjct: 420 DEEGFEAAMEEQRQRAR------DAGNFGTDYNSLIKVDGETEFCGYS------------ 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
               QK          S V A+   G+ V    +G K  VV + TPFYAE+GGQ GD G 
Sbjct: 462 --ATQK---------MSPVSALFVDGQEVSALSAGDKAIVVLETTPFYAESGGQCGDAGL 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D QK    I  H+ +++ G+L +   +   +D + R  +S+NHSATHLL
Sbjct: 511 LRTASGVFKVEDTQKLGNAI-AHYGVMQEGVLASSDHVEALVDEKRRNAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I  N  + T +
Sbjct: 570 HAALRQVLGEHVTQKGSLVRAENLRFDFSHLEAMTAAEIKQVERLVNAQIRLNHVIETHV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+++VRV+S+     G  S+ LCGG H S TG+I L  I+SE
Sbjct: 630 MDIESAKQKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASHTGDIGLFKILSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AGIRRIEA+TG+ A   L  Q  K +      K+S+   + + +++ +E ++L+  
Sbjct: 685 GGVAAGIRRIEAVTGEAALDALETQQHKYEE-----KLSE--AMQKTKQLEKEIQQLKDK 737

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A +     ++ +    IA V  +   ++  D+K L+ ++D L+ ++ SGII+L  ++ +
Sbjct: 738 LASQASANLIDQVKL--IAGVKVLVAQLNGADNKALRGMVDELKNQLGSGIILLGNVA-D 794

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG +      A+  V 
Sbjct: 795 DKVGLIAGVTNDLTAKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGSDAQALPLALESVD 853

Query: 894 SFLKK 898
           +++ +
Sbjct: 854 AWIAE 858


>gi|78047331|ref|YP_363506.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|123585336|sp|Q3BUQ7|SYA_XANC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78035761|emb|CAJ23452.1| Alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 882

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/914 (42%), Positives = 539/914 (58%), Gaps = 60/914 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G G    +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + +TD QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +P T+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPFTADELAVIERKVNAEVRANHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLE--- 749

Query: 775 AKRKLQLNVEDLSCHKIADVNFMS----------HIISEVDSKELKSVMDALQKKIQSGI 824
             R+L+     L+    AD+   +            +   D+K L+  MD L++++   +
Sbjct: 750 --RELESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSV 807

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G S  K A V  V             L  +++++  GG GGGRP +AQ GG +G  
Sbjct: 808 IVLAGASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPA 865

Query: 885 ADQAIAGVASFLKK 898
              A+ GV  ++K+
Sbjct: 866 LATALDGVPLWVKQ 879


>gi|326794049|ref|YP_004311869.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326544813|gb|ADZ90033.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 871

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/914 (42%), Positives = 557/914 (60%), Gaps = 68/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R +FL +F+   H+++ SSSLIP NDPTL+FTN+GMV FK++F G +K  Y   TT 
Sbjct: 4   SELRQSFLSYFESKQHQVVESSSLIPGNDPTLLFTNAGMVQFKDVFLGTDKRNYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK   L Q +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIGYAWEFLTKVAKLPQEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY ED+EAF +W K  GL  +KIIRI  N       DNFW M +TGPCGPC+E+F+
Sbjct: 124 LLVTVYAEDDEAFDIWHKEIGLPKEKIIRIGDNKGARYASDNFWQMGDTGPCGPCTEVFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GG PGS EE G+R+IEIWN+VFMQF +    +   LPK S+DTGMGLER+A +
Sbjct: 184 DHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSANGDMAPLPKPSVDTGMGLERIAAI 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294
           LQ   +NY+IDLF++LI+AS    G     N++ +   RVI DH+RS SF+I DG++P+N
Sbjct: 244 LQGVHSNYEIDLFQNLIKASANAVGT----NDLESQSLRVIADHIRSCSFMIVDGVVPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+ AL +EMG AYPEL + K  +   L  E
Sbjct: 300 EGRGYVLRRIIRRAIRHGNKLGQKGVFFHTLVEALDSEMGEAYPELRKLKERVASILLKE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTLD+G+ +L+  +S LG  +++ G+  FKLYDT+G P D+  D+     L  ID
Sbjct: 360 EEQFAKTLDQGMRILEEAISELGDSKVIPGETVFKLYDTYGFPADLTNDVARENELE-ID 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-----YGATQFIGYDLLRGSKFM 469
              F  A+EEQR+RAR+ S            FS+           T+F GY  L G    
Sbjct: 419 EAGFEAAMEEQRARARSASN-----------FSMDMSGDVSIDSETEFTGYTELEGD--- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                  C             +V+A++  G  V+E  +GQ   V+   TPFY E+GGQ G
Sbjct: 465 -------C-------------VVEALIVDGSNVDEIQAGQDAVVLLKSTPFYGESGGQAG 504

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   G G   ++++  K+ +   +H  +++ G ++   ++   +D   R   ++NHSA
Sbjct: 505 DQGWLRGPGA-FKVSNTAKQGKA-HLHQGVLKEGAIKVGDTVAAQVDRSMRNATALNHSA 562

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  I+G HV+Q GS +  + LRFD +H + +T+AE++ +ED VN+ I  N  V
Sbjct: 563 THLVHEALRRIVGDHVNQKGSLVNAERLRFDFSHFEGLTNAEIEQVEDMVNEQIRLNHEV 622

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           +T IM+ + A   GA AL G KY+  VRV+++    G  +S  LCGGTHV  TG+I L  
Sbjct: 623 ITEIMDVDSAKEKGAMALFGEKYDSEVRVLTM----GADYSIELCGGTHVKRTGDIGLFK 678

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+E  I AG+RRIEA+TG+ A   +   +  L  +A+ +K ++ N + +V  + ++ R 
Sbjct: 679 IVTEGGIAAGVRRIEAVTGKAAIDAVRQTENALNGVAAVVKGNKENALEKVSALNDQARA 738

Query: 770 LQL---IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGI 824
           LQ        +       DL+   I D+     ++++V  D K L+ ++D L+ K++S +
Sbjct: 739 LQKEIDALKSKLAAAAGSDLAGQAI-DIEGGKLLVAQVESDPKALRDLLDQLKSKLESAV 797

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L  ++ + K S++  VT++L  +  A DL ++ A ++  G GGGRP MAQ+GG N   
Sbjct: 798 ILLAAVN-DGKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGKGGGRPDMAQAGGNNPAA 855

Query: 885 ADQAIAGVASFLKK 898
              A+  V +++K+
Sbjct: 856 LPDALEQVPAWVKE 869


>gi|222054217|ref|YP_002536579.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221563506|gb|ACM19478.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 876

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/900 (43%), Positives = 554/900 (61%), Gaps = 54/900 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F  FF++ GH ++ SS+L+P NDPTL+FTN+GM  FK++F G EK  Y    + QK
Sbjct: 6   IREKFFRFFEERGHTVVESSNLVPRNDPTLLFTNAGMNQFKDLFLGLEKRGYVRACSSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AWD LT+E  LD+ RLY
Sbjct: 66  CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWDFLTRELKLDKNRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY +D+EA ++W K  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G     G
Sbjct: 126 VTVYTDDDEAAEIWNKQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCG 185

Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            P + E G   +RY+EIWN VFMQF +  K     LPK S+DTGMGLER+ TV+Q  T+N
Sbjct: 186 SP-TCEVGCDCDRYMEIWNNVFMQFNRDAKGNMTPLPKPSVDTGMGLERICTVMQGVTSN 244

Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           YD DL + +I+  E+++G +Y  +  + V+ RVI DH R+ +FLI DG+LP+NEGRGYVL
Sbjct: 245 YDTDLLQGIIRHVEKLSGKRYRQDEKDDVSMRVIADHARAITFLICDGVLPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRA  +A++LG+ EP++  ++ A+   MG AYPEL++ +  +++ + +E+ERF +T
Sbjct: 305 RRIMRRAARHAKMLGFAEPVLYRIVDAVNAMMGDAYPELLEREEYVKKVIHAEEERFMET 364

Query: 362 LDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LDRGL +L+  ++ L K    +L G+V F+LYDT G P+D+  DI+   GL  ID   F 
Sbjct: 365 LDRGLSILNEEVALLKKQAGTVLPGEVVFRLYDTFGFPVDLTADIVANEGLT-IDEDGFV 423

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E+QR +AR +  G G     +I+ +L  K   + F+GYD                  
Sbjct: 424 LCMEKQRLQARENWKGSGEEGLAEIYKNLHGKGIRSAFVGYD------------------ 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S +  ++++G  V EAV G++VEVV   TPFY  +GGQ GD G       
Sbjct: 466 -----EQTAYSPITVLLREGREVTEAVVGEEVEVVVGTTPFYGASGGQAGDIGVISTGNA 520

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++    K    + VH  +VE+G ++   +  L +  + R   + NH+ATHLL  AL  
Sbjct: 521 HLKVVGTSKPFADLTVHRVLVEKGTVKVGDAADLKVLTRERNATARNHTATHLLQSALRQ 580

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++G HV Q GS +T D LRFD TH   + + EL+ +E+ VN  I +N  V +  M   +A
Sbjct: 581 VVGDHVKQAGSLVTADRLRFDFTHFSAMAADELRRVENIVNGYIMENSDVSSVEMAAAEA 640

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + SGA AL G KY DRVRVV V     G  SS LCGGTHV + G+I    IVSE+ I AG
Sbjct: 641 MQSGATALFGEKYGDRVRVVRV-----GEVSSELCGGTHVQAAGDIGFFKIVSEAGIAAG 695

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG  A  ++   +++ K LA+ +K   G V+ RVE +    ++LQ     R++
Sbjct: 696 VRRIEAVTGSGAIEYVQQLEDEQKHLATLIKAEGGGVIDRVERLLARQKELQ-----REV 750

Query: 780 QLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +     L+  K AD          +  ++  +   D K L+ + D+L+ ++QSG+I+L G
Sbjct: 751 EELQSRLNASKSADLLAGVRESNGIKILATRVETGDPKGLRDLSDSLKDRLQSGVIVL-G 809

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +   KA++L+ VT+DL DR  A D+ +  A ++ GG GGG+P +AQ+GG      D+A+
Sbjct: 810 CAAAGKANLLVAVTKDLTDRCKAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEAL 868


>gi|161830958|ref|YP_001596677.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|205830041|sp|A9NCN7|SYA_COXBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161762825|gb|ABX78467.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 865

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/904 (41%), Positives = 555/904 (61%), Gaps = 52/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ   
Sbjct: 2   NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L  
Sbjct: 62  SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G  
Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGPT 181

Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+  V+Q   
Sbjct: 182 ISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLTAVMQGVH 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF++L++A    T +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYVL
Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  T
Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLLEEMGGAYPLLRKSQALIEQTIKQEEIQFSNT 359

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++A
Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417

Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +E QR ++ +AH           I        G TQF+GY+ L                 
Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                N  ++++ +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D  +R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L    +++ DV+ +  +   +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             ++  VT++ L+ FNA + LA ++ KV  GG  GGRP +AQ  G      + A+A V  
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857

Query: 895 FLKK 898
           +++K
Sbjct: 858 WIEK 861


>gi|153206762|ref|ZP_01945603.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165918516|ref|ZP_02218602.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212218396|ref|YP_002305183.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|120577125|gb|EAX33749.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917762|gb|EDR36366.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212012658|gb|ACJ20038.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 865

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/904 (41%), Positives = 556/904 (61%), Gaps = 52/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ   
Sbjct: 2   NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L  
Sbjct: 62  SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G  
Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGPT 181

Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q   
Sbjct: 182 ISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGVH 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF++L++A    T +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYVL
Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  T
Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSNT 359

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L +GL +LD  ++ L   +I  G++ F+LYDT+G P D+  DI   R    +D   F++A
Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417

Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +E QR ++ +AH           I        G TQF+GY+ L                 
Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                N  ++++ +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D  +R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L    +++ DV+ +  +   +  V+ + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVERETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             ++  VT++ L+ FNA + LA ++ KV  GG  GGRP +AQ  G      + A+A V  
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857

Query: 895 FLKK 898
           +++K
Sbjct: 858 WIEK 861


>gi|34497059|ref|NP_901274.1| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|41018171|sp|Q7NXM2|SYA_CHRVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34330326|gb|AAQ59280.2| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 877

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/913 (43%), Positives = 543/913 (59%), Gaps = 60/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF   GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK  Y   T
Sbjct: 2   KTSEIRKKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E    L
Sbjct: 62  TSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWEFLTGEQWLAL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L +TVY  D+EA+ +W +  GL ADKI+RI  N       DNFW+M +TGPCGPC+
Sbjct: 122 PKDKLMVTVYATDDEAYDIWHQTVGLPADKIVRIGDNKGAPYASDNFWTMGDTGPCGPCT 181

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G  + GG PGS  E+G+R++EIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 182 EIFFDHGPSVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDEAGTLHPLPKPSVDTGMGLER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++TVLQ   +NY+ D    L++A+ + TG++Y   ++ + +VI DH+R+ SF++ADGILP
Sbjct: 242 LSTVLQHVKSNYETDALACLVRAAARETGVEYS-QDVPSLKVIADHIRACSFMVADGILP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI RRA+ +   LG        ++  L  EMG AYPEL + +  IE+ LR
Sbjct: 301 SNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVAEMGEAYPELREKQAHIEDALR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+ +F +TL+ G+ L+D  L   G    L+GD  FKLYDT G P+D+  DI   RG+  
Sbjct: 361 AEEIKFAETLEIGMGLVDSALE--GGKTALDGDTIFKLYDTFGFPVDLTADICRERGIHA 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            D+  F +A+E QR R RA S    SG   KI +  ++    T+F GYD           
Sbjct: 419 -DLEGFERAMEAQRERGRAGSNFKMSG---KIAYDGED----TRFHGYD----------- 459

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        + V + V A+ +  + V+   +G +  VV D T FYAE GGQ+GD G
Sbjct: 460 ------------KSSVEAKVLALYKGTDPVDSLSAGDEGIVVLDGTAFYAEGGGQVGDVG 507

Query: 533 ---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
               A G      + D QK     F H   + RG L+   ++  TID   R+  + NHSA
Sbjct: 508 EISAAGGIAALFDVADTQKIQGAAFGHKGKLARGALKVGDAVTATIDLHQRQASARNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS + P+  RFD  H + +T+A++  +E  VN +IA N  V
Sbjct: 568 THLLHAALRHVLGGHVVQKGSLVNPERTRFDFAHGEAVTAAQIAELERVVNHVIAANYEV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +M+ E A  SGA  L G KY D VRV+++     G  S+ LCGGTHV  TG+I L  
Sbjct: 628 KAELMSMEAAQKSGAMMLFGEKYGDEVRVLTM-----GDFSAELCGGTHVKRTGDIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IV+E  + AG+RRIEA+TG+ A +++  QD  +K  A+ LK    + V+ ++  + +  +
Sbjct: 683 IVAEGGVAAGVRRIEAVTGEGALAYIQAQDALIKEAAAALKAQTSDEVLAKIAALQDSAK 742

Query: 769 KLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
            L+   AK K QL  +  D      AD+N +  + +E+   D+  L+  +D L+ K+ S 
Sbjct: 743 ALEKELAKLKGQLASSAGDSLADAAADINGVKVLAAELPGADNTALRETLDKLKDKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            I+L     + K +++  VT DL  +  A +L    A+ + GG GGGRP MAQ+GG    
Sbjct: 803 AIVLAA-KGDGKVALVAGVTADLTGKLKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPE 860

Query: 884 KADQAIAGVASFL 896
             D A+ GV +++
Sbjct: 861 NLDAALNGVQAWV 873


>gi|85858185|ref|YP_460387.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|123515492|sp|Q2LPL7|SYA_SYNAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85721276|gb|ABC76219.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 878

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/896 (43%), Positives = 546/896 (60%), Gaps = 41/896 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR +FL FF+  GH  + SSSLIP +DPTL+FTN+GMV FKN F G E   Y    + 
Sbjct: 6   SEIRESFLRFFEGKGHTRVSSSSLIPKDDPTLLFTNAGMVQFKNAFLGLEDRGYSRAASC 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L + R
Sbjct: 66  QKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKREAIAWAWEYLTEVIQLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+ +D+EA+++W +   + AD+I+R+    NFW M ETGPCGPCSEI +DQGE   
Sbjct: 126 LWVTVFQDDDEAYRIWLEEMRIPADRIVRLGEKSNFWMMGETGPCGPCSEIIYDQGEGTG 185

Query: 185 GGLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P    E   +RY+EIWNLVF QF++        LPK +IDTGMGLER+A V Q   +
Sbjct: 186 CGRPDCHIECGCDRYLEIWNLVFTQFDRDEAGILTPLPKPNIDTGMGLERLAAVAQGVKS 245

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DLF  L+ A  + TG  Y  N  + V+ RVI DH RS +FLI DGILP+NEGRGYV
Sbjct: 246 NYDTDLFAPLLAAISRTTGKPYGKNEEDDVSLRVIADHARSVAFLIGDGILPSNEGRGYV 305

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + +LLG  +P +  L P +   M   YP+L+  K  I + + +E++RF +
Sbjct: 306 LRRILRRAARHGKLLGLNQPFLHELTPVVIEAMKETYPDLLDKKSYITKVILNEEQRFME 365

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD GL +L   +S L K     + GDV F+LYDT G P D+  DI+    L  ID   F
Sbjct: 366 TLDAGLKILQEEVSRLKKAGTTTIPGDVVFRLYDTFGFPTDLTADIVRRDNLT-IDEDGF 424

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A+E QR +AR    G G      ++  L  +  +T F+G++                 
Sbjct: 425 QRAMEVQREKARESWKGSGEEAISALYQKLSTQGISTVFVGHE----------------- 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                + N  S I  A++Q+ E+V+    G++ E++  +TPFY E GGQ+GDTG   G+ 
Sbjct: 468 ----GVCNAQSQIT-ALLQKEELVDSLAEGEEGELIVAETPFYGEIGGQIGDTGTIEGED 522

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D ++  + +  H   V +G  R   S+ L +    RR    NHSATHLL  A+ 
Sbjct: 523 FVFEVLDTRRPLDNLISHVGRVIKGRGRKGDSVNLIVAEDKRRATEANHSATHLLQAAMK 582

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           T++G+H+ Q+GS +T + LRFD TH   I   EL+ IE+  N +I +NLPVVTR++  E+
Sbjct: 583 TVMGNHIKQSGSLVTAERLRFDFTHFSKIEENELEQIENLANAVIRRNLPVVTRVLPLEE 642

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ +GA A+   KY ++VRVV +     G  S  LCGGTH+  TG+I  + I+ ES+I A
Sbjct: 643 AMKTGATAVFDEKYGEKVRVVRM-----GDFSMELCGGTHIQRTGDIGFIKIIHESAIAA 697

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIH 774
           G+RRIEA+TG+ A +H    + +LK  A  LKVS  ++  RVE++     ++ ++++ + 
Sbjct: 698 GVRRIEAVTGREAVNHARRVENELKKAAKLLKVSPFDLGERVEKLIKTQKDQEKEIETLK 757

Query: 775 AKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +   + + + LS   +I  +  ++  ++  D+K L+   D L+ ++QSGII L+G   E
Sbjct: 758 GRLAAKDSADLLSQAREIRGIRVLTAAVNAPDAKTLRDFGDKLRDRLQSGII-LIGSKAE 816

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            KA +L +VT+DL DR++A  + R  A V+ GG GGGRP MAQ+GGP     ++A+
Sbjct: 817 GKAMLLCLVTKDLTDRYSAGSIIREIAPVV-GGKGGGRPDMAQAGGPEPENLERAL 871


>gi|320197699|gb|EFW72308.1| Alanyl-tRNA synthetase [Escherichia coli EC4100B]
          Length = 833

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/854 (44%), Positives = 532/854 (62%), Gaps = 56/854 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N   
Sbjct: 61  KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q 
Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  
Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL-- 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   
Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYD
Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I        
Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ V+   +GQ+  
Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+   ++ 
Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQ 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E+
Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           +++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ 
Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  LK  
Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSK 807
             N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE   V+ K
Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799

Query: 868 GGGRPHMAQSGGPN 881
           GGGRP MAQ+GG +
Sbjct: 800 GGGRPDMAQAGGTD 813


>gi|187927840|ref|YP_001898327.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|187724730|gb|ACD25895.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 888

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/916 (42%), Positives = 546/916 (59%), Gaps = 61/916 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    +
Sbjct: 11  ASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAAS 70

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L   
Sbjct: 71  VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAE 130

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEIF
Sbjct: 131 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 190

Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230
           +D G  + GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG+
Sbjct: 191 YDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG+
Sbjct: 251 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 308

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + E 
Sbjct: 309 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVVEV 368

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+ C  
Sbjct: 369 LRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDV-CRE 427

Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
               +D  +F+ A+  QR +ARA     + +GT       L      T F GY+ L    
Sbjct: 428 NDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYEQL---- 476

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            ++E                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GGQ
Sbjct: 477 -VRE-----------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGGQ 518

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   NH
Sbjct: 519 VGDQGTLKAATVWFDVVDTLKVQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRNH 578

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N 
Sbjct: 579 SATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 638

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L
Sbjct: 639 ATNAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIG------SSKELCGGTHVARTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ 
Sbjct: 693 FKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTSRIVQVQDQV 752

Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+Q+
Sbjct: 753 KTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQT 812

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L  +S + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 813 AAIVLGSVS-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 870

Query: 883 NKADQAIAGVASFLKK 898
           +   QA+AGVA+++++
Sbjct: 871 DNLPQALAGVAAWVQQ 886


>gi|54294686|ref|YP_127101.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|59798486|sp|Q5WVQ2|SYA_LEGPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53754518|emb|CAH16002.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 860

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/905 (42%), Positives = 554/905 (61%), Gaps = 60/905 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL +F + GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E   YQ   T 
Sbjct: 4   SEIRQAFLNYFVQRGHQLVASSSLIPSNDPTLLFTNAGMVQFKDLFLGLETRPYQRAVTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +   R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G  + 
Sbjct: 124 LWVTVYKEDLEAEGIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEVA 183

Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q   +N
Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDREGCLHPLPKPSVDTGMGLERLAAVIQGVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNH---RVIVDHLRSSSFLIADGILPANEGRGY 299
           Y+ID F++LI+A  Q+      G +I +NH   +VI DH+RS SFLI DG+LP+NEGRGY
Sbjct: 244 YEIDSFQYLIKAIAQL------GQDIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F 
Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL   + +L K + L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FN
Sbjct: 358 RTLEQGLRLLQDHIKNL-KGQELSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++QR +++A S      TT+  + ++ +    ++F GY+                  
Sbjct: 416 QLMQQQREQSQAAS----QFTTD--YHAVSQLDHQSEFHGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG   
Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSLNKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEF 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+ D QK  + + VH+  V +G L  ++S+   +D+  R  + +NH+ATHLLH AL  
Sbjct: 507 SFQVDDTQKVGQAV-VHYGEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKQ 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+G HV Q GS +  +  RFD +H +P+T  +++ IE+ VN  I  N  V+T++M+ E A
Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEPLTPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +G
Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--- 776
           IRR+E +TG+ A + +  Q   + +LA+ LK +  ++  +V ++  + +  + + AK   
Sbjct: 681 IRRVEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLS 740

Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I ++ 
Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799

Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +V+  V+++++ +  NA  L R        G GGGR  MAQ GG      +  I  + 
Sbjct: 800 KMNVIAGVSKNIIGKTPNAAQLVRHLC-----GKGGGRDDMAQGGGDVPEDLNSKIKEIK 854

Query: 894 SFLKK 898
             ++K
Sbjct: 855 EMIEK 859


>gi|300113492|ref|YP_003760067.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539429|gb|ADJ27746.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 874

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/904 (44%), Positives = 557/904 (61%), Gaps = 45/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +RT FL++F++ GHE++PSS L+P NDPTL+FTN+GMV FK +F G+E   Y  
Sbjct: 1   MKSSAELRTIFLDYFRRQGHEIVPSSPLVPANDPTLLFTNAGMVQFKEVFLGREARTYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+   L
Sbjct: 61  AASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+ ED+EA  +W +  G+S ++  R    DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PPERLWVTVFKEDDEAANIWLRGIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGSSE EG+RY EIWNLVFMQ+++  +     LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PEIAGGPPGSSEQEGDRYTEIWNLVFMQYDRDKEGRLSPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+HLI A   + G++ +    +  RVI DH+RS +FLI DG+ PANEGRGY
Sbjct: 241 VHNNYDIDLFRHLIAAITALPGVQNQEQTSL--RVIADHIRSCAFLIVDGVQPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +  +LG  +P   HL   L  EMG AYPEL++ +  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHVLGLRDPFFYHLAQPLVQEMGEAYPELVRLQSQVERVLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL +L+  + HL  D ++ G+  F+LYDT G P+D+  DI   R L+ +D+  F 
Sbjct: 359 ETLEQGLKILEQDIIHL-SDGVIPGETIFRLYDTFGFPVDLTADIARERKLS-LDMKGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+  QR RARA S      + E++  +L+     T+FIGY+              LC K
Sbjct: 417 QAMARQRERARAASRFSEEYSAEELQINLE-----TEFIGYEQ-------------LCAK 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                  G    +  + +  E VE+  +G+   VV DQTPFYAEAGGQ+GD G   G   
Sbjct: 459 -------GQVVALFCLAETMEAVEQLNAGESGMVVLDQTPFYAEAGGQVGDRGTLHGSSG 511

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K+     VH   V  G LR   S+   ++ Q R    +NHSATHLLH AL  
Sbjct: 512 LFNVTDTRKQG-AAHVHLGEVRLGQLRIGDSIQSEVNRQYRTPTRLNHSATHLLHAALRE 570

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V+Q GS +  D LRFD +H + + S +L+ IE  +N  I  NLPV T++M  + A
Sbjct: 571 VLGESVAQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLINAKIRANLPVETQLMPLQQA 630

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG+I L  I++E  + AG
Sbjct: 631 LDAGVVALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGVAAG 685

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHA 775
           IRRIEA+TG+ A S +   +  L++L   LK S+ + V +     ++  ++ ++LQ + A
Sbjct: 686 IRRIEAVTGEAALSWVEESEVCLEALMGRLKASRDSAVDKLEQLQQQNRQQEKELQRLKA 745

Query: 776 KRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           K        DLS    ++  +  ++  I  VDSK L++ +D L+ K+    ++L G   E
Sbjct: 746 KLATAGGA-DLSAQAQEVRGIKVLAARIDGVDSKTLRATVDQLKGKLTIAAVVL-GTVAE 803

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT++  DR  A DL    A+ + GG GGGRP MAQ+GG + +  D A+  V 
Sbjct: 804 GKVVLIAGVTKNATDRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRHPDNLDAALGLVP 862

Query: 894 SFLK 897
            +++
Sbjct: 863 KWVE 866


>gi|300704797|ref|YP_003746400.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299072461|emb|CBJ43811.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 880

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/916 (42%), Positives = 543/916 (59%), Gaps = 61/916 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    +
Sbjct: 3   ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAAS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L   
Sbjct: 63  VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEIF
Sbjct: 123 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230
           +D G  I GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG+
Sbjct: 183 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG+
Sbjct: 243 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + + 
Sbjct: 301 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+ C  
Sbjct: 361 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 419

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRGSK 467
               +D  +F+ A+  QR +ARA      +G  +    +L      T F GYD L+R   
Sbjct: 420 NDVIVDEAAFDAAMNRQREQARA------AGKFKMTAGTLDYTGDKTTFHGYDQLVRD-- 471

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                ++ V A+   G  V+    GQ   VV D TPFYAE+GGQ
Sbjct: 472 ---------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   NH
Sbjct: 511 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRNH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N 
Sbjct: 571 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 630

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L
Sbjct: 631 ATNAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 684

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ 
Sbjct: 685 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRVSEAAAALRAQPSELTQRIVQVQDQV 744

Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+++
Sbjct: 745 KSLEKELERLKSKLAASQGDELVEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 805 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 862

Query: 883 NKADQAIAGVASFLKK 898
           +K  QA+AGV +++++
Sbjct: 863 DKLPQALAGVTAWVQQ 878


>gi|212704759|ref|ZP_03312887.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098]
 gi|212671822|gb|EEB32305.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098]
          Length = 889

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/907 (42%), Positives = 538/907 (59%), Gaps = 45/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +LEFF +NGH++LPS  LIP NDPTL+FTN+GMV FK  F G+E      
Sbjct: 1   MLTAKEIRRRYLEFFARNGHDILPSGPLIPPNDPTLLFTNAGMVQFKKFFLGEEVRDVPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  AW  +T+E +L
Sbjct: 61  VTTSQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAITWAWKFVTEELEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+ ED+EA  +W++++GL A++I+R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKERLWVTVFREDDEAAAIWQEVAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G   + +R++EIWNLVF QF+Q     R  L + +IDTGMGLER+A V 
Sbjct: 181 EDMACGPDCGIGKC-DCDRFLEIWNLVFTQFDQHADGTRDRLARPNIDTGMGLERIAAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNI-VNHRVIVDHLRSSSFLIADGIL 291
           Q K +N+D DLF+ +IQ + ++ G+KY     + N++    RVI DH R+++FLIADG L
Sbjct: 240 QGKRSNFDCDLFQDIIQYAAELAGVKYSFSAPDTNDVDTALRVIADHARAAAFLIADGTL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRR++RRA+ +A L+G  EP +  +   +   MG  YPEL +    I   +
Sbjct: 300 PSNESRGYVLRRLIRRALRFATLMGVHEPFLYKVARKVTEIMGEDYPELTEHADFIARAV 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E++RF  TL +GL LL+  L+ L K  D+++ G+  FKL DT+G PLDI+ D+   RG
Sbjct: 360 HEEEQRFSLTLGKGLALLEDQLAELEKAGDKVIPGEFCFKLSDTYGFPLDIITDVSEKRG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRG 465
            + +D+  F   + EQR RAR      G     G+   ++  L +    + F GY  L  
Sbjct: 420 FS-VDVAGFEAHMAEQRRRARESQKKSGLLGQDGSGSSLFQQLADDGLQSVFTGYSGL-- 476

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               NG   IV  + + G  VEE  +G+K  VV +QTPFY E+G
Sbjct: 477 --------------------NGQGRIVALLDESGLSVEELPAGRKGYVVTNQTPFYGESG 516

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ GDTG   G     ++ D QK A  + VH+  VE+G+LR +  + L+++   R   + 
Sbjct: 517 GQAGDTGRMEGPDGAARVLDTQKPAPTLIVHNIEVEQGLLRIDQEVALSVEEDARMATAR 576

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS THLLH AL ++LG+HV Q GS +    LRFD +H   +   EL ++E  VN  I  
Sbjct: 577 NHSCTHLLHAALRSVLGTHVKQAGSLVNSQRLRFDFSHIAALPPEELAAVERQVNRAIMA 636

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + PV T+ M  ++A+AS A AL   KY D VRVVS+  +D    S  LCGGTH+S TG+ 
Sbjct: 637 DYPVCTKEMKHDEAVASVAMALFNEKYGDTVRVVSMG-DDAHTESVELCGGTHLSHTGQA 695

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSES + AG+RRIEA+TG  A    + Q  +L  L++ LK   G +  RV+ +  
Sbjct: 696 GSFLIVSESGVAAGVRRIEAVTGWNAYDLAVAQRAELHDLSALLKAKPGQLAERVQALHS 755

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQS 822
           + +KL+    K             K  +VN +  + +++D    K L+ +MD ++ +I S
Sbjct: 756 DVKKLRKASEKAAASPATGADLVQKATEVNGVKLLTAKLDGVPVKALRDIMDDVRSRIPS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+  L  +  E K  +L+ V++DL  RF A  L +  A    GG GGGRP +AQ+GG   
Sbjct: 816 GVACLATVEGE-KVGLLLYVSKDLHGRFTAPALIKDVAAPC-GGSGGGRPDLAQAGGTKA 873

Query: 883 NKADQAI 889
           +  + A 
Sbjct: 874 DGVEAAF 880


>gi|302189037|ref|ZP_07265710.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 874

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 544/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERDLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G   R  ++D  K   G F+HH +V  G L     +   +  + R   ++NHSATHLL
Sbjct: 510 LQGGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGTQVETQVSDEVRNATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHARRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|304413367|ref|ZP_07394840.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304284210|gb|EFL92603.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 893

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/917 (42%), Positives = 562/917 (61%), Gaps = 64/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH ++ SSSL+P NDPTL+FTN+GM  FKN+F G E+      T
Sbjct: 14  STAEIRQMFLDFFDSKGHRIVASSSLVPHNDPTLLFTNAGMNQFKNVFLGLEQSDSVRAT 73

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F L
Sbjct: 74  SSQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHFAWELLTSEQWFHL 133

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L+ITVY  DEE +++W    G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 134 PKDKLWITVYQTDEETYRIWADEVGIPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 193

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ + GG PGS  EEG+RYIEIWN+VFMQF +Q       LP+ S+DTGMGLER
Sbjct: 194 EIFYDHGDHLWGGPPGSPEEEGDRYIEIWNIVFMQFNRQLDGTMLALPQPSVDTGMGLER 253

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ+  +NY+IDLF+ LI+A  ++T +    N  +  RVI DH+RS +FLIADG++P
Sbjct: 254 IAAVLQQVNSNYEIDLFRDLIKAIAEITAVSDLSNQSL--RVIADHIRSCAFLIADGVMP 311

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG        L+  L + MGSA   L Q + LIE+ L+
Sbjct: 312 SNENRGYVLRRIIRRAIRHGHMLGIKRVFFYKLVAPLISVMGSAAEALKQQQSLIEQWLK 371

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS +  D  L G+ AF LYDT+G PLD+  D+   R L  
Sbjct: 372 TEEEQFTRTLERGLALLDEELSKITGD-TLAGETAFSLYDTYGFPLDLTADVCRERHLK- 429

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+  QR RAR       S      + +L +  G ++F GY           +
Sbjct: 430 VDEAGFERAMAAQRLRAR------DSNVFATDYNNLIKVEGKSEFSGY-----------E 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE------AVSGQKVEVVFDQTPFYAEAGG 526
            + L Q+          +++ A++  G+ V+E      A   +++ V+ D+TPFYAE+GG
Sbjct: 473 HQHLQQQ----------ALIIALIHNGKAVDEIHFSDKAAPDEEILVILDKTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD+G  + D     + D QK    I  H   +  G LR   S+   +D + R ++ +N
Sbjct: 523 QVGDSGKLVNDSAHFTVRDTQKHGATI-AHVGQLTTGCLRIGESINAAVDAERRHRIRLN 581

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL   LG HV+Q GS +    LRFD +HS+ +T A+++ +E+ VN  I  N
Sbjct: 582 HSATHLLHAALRQTLGQHVAQKGSLVNDHYLRFDFSHSQAMTKAQIQQVENQVNAEIRAN 641

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+ T+IM  E+A  +GA A  G KY+D+VRV+++     G  S  LCGGTH + TG+I 
Sbjct: 642 LPIETKIMALEEAKKTGAMAFFGEKYSDKVRVLTI-----GTFSIELCGGTHTNRTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  I +ES+  AGIRRIEA+TG+ A + L  +   L  ++  LK    N++ ++ +I E 
Sbjct: 697 LFRITAESATAAGIRRIEAVTGEAAMTLLHQESHLLHKISYQLKGDSSNLLDKISKIQEH 756

Query: 767 YRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            + L+           ++  +++ D S  +I     +   +  +  + LK+++D+L++++
Sbjct: 757 NKNLEQELQQLKAQQAKQKSISLSD-SAQQIKGGKLLVKQVDNIAPEMLKTLIDSLKQEL 815

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGG 879
           +S II+L    ++ K +V++ VT++L D+  A +L A L+ +V  GG GGGR  MA  GG
Sbjct: 816 KSAIIVL-ATKQDNKVNVIVGVTKNLTDKIKAGELVADLAKQV--GGKGGGRAEMAMGGG 872

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V +++
Sbjct: 873 TNVATLPAALASVRAWV 889


>gi|167855110|ref|ZP_02477882.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853745|gb|EDS24987.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 853

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/882 (42%), Positives = 542/882 (61%), Gaps = 55/882 (6%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T+ Q+CVRAGGKHNDL+NVG 
Sbjct: 1   MPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNRATSSQRCVRAGGKHNDLENVGY 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLW 140
           T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +   L + +L++TVY+ D+EA+ +W
Sbjct: 61  TARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWLALPKEKLWVTVYETDDEAYDIW 120

Query: 141 KKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE 193
            +  G+ A++I+RI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS+EE
Sbjct: 121 NREIGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEE 180

Query: 194 -GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
            G+R+IE+WN+VFMQF +Q       LPK S+DTGMGLER++ VLQ   +NY+ID+F+ L
Sbjct: 181 DGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGLERISAVLQHVNSNYEIDIFQAL 240

Query: 253 IQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           I+    +  +    N  +  RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ + 
Sbjct: 241 IKEIASLLNVTDLDNKSL--RVIADHIRSCAYLIADGVMPSNEGRGYVLRRIIRRAVRHG 298

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
            +LG        L+P L   MG A   L Q +  I++ L++E+++F +TL+RGL LL+  
Sbjct: 299 NILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKALKAEEDQFARTLERGLALLEDA 358

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L+ + ++++L+G+VAFKLYDT+G PLD+  D+   RG+  ID  SF + ++ QR+RA+A 
Sbjct: 359 LAKV-ENKVLSGEVAFKLYDTYGFPLDLTADVCRERGIT-IDEASFEREMQAQRARAQAS 416

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S     GT       +    G+T+F GY++              C+           + V
Sbjct: 417 S---NFGTDYNYVIKVD---GSTEFKGYEVTE------------CE-----------ATV 447

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
            A+   G+ VE   SG+   VV D+T FY E+GGQ+GD+G    +    ++ D QK  + 
Sbjct: 448 VALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGDSGVIASEICNFEVNDTQKYGQ- 506

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +F H   +  G L     +   ++   R  +++NHSATHLLH AL  +LG HV+Q GS +
Sbjct: 507 VFGHIGQLASGTLSVGDKVKAEVNTTRRHAITLNHSATHLLHSALRQVLGDHVAQKGSLV 566

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           + + LRFD +  + I+ A+L+ IE  +N  I +N+ V T +M+ E A   GA AL G KY
Sbjct: 567 SENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVTTEVMDLESAKQKGAMALFGEKY 626

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            DRVRVV +        S  LCGGTHV  TGEI L  +VSE ++ AG+RRIEA+TG+ A 
Sbjct: 627 GDRVRVVDIT----AAFSVELCGGTHVKQTGEIGLFKVVSEGAVAAGVRRIEAVTGENAI 682

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----LQLIHAKRKLQLNVE-DLS 787
             L  Q + L   A  LK    ++V +++++ E+ +K    LQ +  K   Q   E    
Sbjct: 683 GLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKVEKELQQLKDKLAAQAGGELAKQ 742

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +I  VN +   +  VD+K L++++D L+ ++ S +I+    + E K ++++ VT+DL 
Sbjct: 743 AQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVIVFATQTDE-KVNLIVGVTKDLT 801

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           D+ NA +L  L A+ + GG GGGR  MA +GG       QA+
Sbjct: 802 DKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENITQAL 842


>gi|108763083|ref|YP_633939.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122387764|sp|Q1D084|SYA_MYXXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108466963|gb|ABF92148.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 898

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/922 (42%), Positives = 562/922 (60%), Gaps = 61/922 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF++ GH  + SSSL+P NDPTLMFTN+GMV FK++FTG+E   Y+  T
Sbjct: 6   TASEIREAFLKFFEERGHRRVASSSLVPANDPTLMFTNAGMVQFKDVFTGRETRDYRRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI   W+ +T+   L  
Sbjct: 66  TSQKCVRAGGKHNDLDNVGFTARHHTFFEMLGNFSFGDYFKADAIAYGWEFVTRTLGLST 125

Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++       DEEA++LWKK  G+ A+++ ++   DNFW+M +TGPCGPCSEI 
Sbjct: 126 DRLAVTVFNGEGGTPWDEEAYELWKK-QGVPAERLYKLGLKDNFWAMGDTGPCGPCSEIH 184

Query: 177 FDQGECIP-------GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           + QG+ IP           G + + +R++EIWNLVFMQFE++ K    I LPK SIDTG 
Sbjct: 185 YHQGDDIPCVEEAEGKKCQGVACDCDRWLEIWNLVFMQFERKEKDGPLIPLPKPSIDTGA 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NY+ DLF++++    ++ G  Y   +  + RV+ DH R+++FLI+D
Sbjct: 245 GLERIASVVQGKRSNYETDLFQNILATVSELCGKPYSQESGASQRVVADHSRAAAFLISD 304

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G+ P+NEGRGYVLRRIMRRA+ +  + LG  +     ++  +   MG AYPEL +++  +
Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGTQQLGLEDVFFFKVVDRVIELMGDAYPELRESRTFV 364

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E  R E+  F +TL RGL L++  LS L K   + L+GDV F L+ T+G P D+ Q I 
Sbjct: 365 LEVCRHEETSFRQTLSRGLKLIEEELSELQKAGGKQLSGDVVFLLHGTYGFPWDLTQIIA 424

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL  +D++ F + L+E+  + +    G G   T +++  L E+ G T+F+GY+    
Sbjct: 425 RERGL-DVDLVRFEERLKEEADKNK--FAGSGDKATGEVYLKLAERLGTTEFLGYEGEGH 481

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                     ++AIV+ G  V +A  G  VE+V D+TPFY E+G
Sbjct: 482 EGEGS---------------------IRAIVKDGAEVTQATQGDTVELVLDRTPFYGESG 520

Query: 526 GQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+GDTG  +G G +   ++TD Q+   G+ VH   V  G  +    +   +D + R+ +
Sbjct: 521 GQMGDTGRIVGHGGKAVAKVTDAQRPVPGLVVHSVEVSEGTFKVGDMVQAGVDSERRKSI 580

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG HV Q GS + PD LRFD  H  P TSA+L+ +ED VN  I
Sbjct: 581 RANHSATHLLHKALKLVLGEHVKQAGSVVAPDYLRFDFAHFSPATSAQLEQVEDLVNGWI 640

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N    TR+M+ EDA  SGA A+ G KY + VRVV+V  E     S+ LCGGTHV  +G
Sbjct: 641 RDNAGAETRVMSLEDAKKSGAVAMFGEKYGETVRVVTVHPE-----STELCGGTHVRRSG 695

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-- 761
           +I L  I SES + +G+RRI A+TG  A  H+  Q+ +L+ +A  LK +   V  RVE  
Sbjct: 696 DIGLFKIASESGVASGVRRIVALTGIGALQHVREQEHELRKVAELLKSNPKEVSKRVEAT 755

Query: 762 --EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDAL 816
              + E  RK++ +  K +   + +DL   +  DVN M  + ++VD+ +   L+ + D L
Sbjct: 756 QKRVKELERKVEEVAVKAQTA-SSKDL-LEQARDVNGMKVLATQVDAADDNVLRGMADQL 813

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           + +I+SG++  +G  K+ +A +L+  T+D++ +  NA  L R  AK + GG GGG+  MA
Sbjct: 814 RDRIRSGVVA-IGGEKDGRAIILVAATKDVVAKGINAGALVREMAKEV-GGKGGGKAEMA 871

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q+GGP+ +K   A+  +   +K
Sbjct: 872 QAGGPDASKLPAALEKLYELVK 893


>gi|194365256|ref|YP_002027866.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|194348060|gb|ACF51183.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 882

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/893 (44%), Positives = 550/893 (61%), Gaps = 49/893 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGIPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG     N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAADTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGK-ASNGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA     G G T  +   L      T+F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAG-KFGGGVT--LPAELVATLSPTRFLGYDRLQ---------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +G++  V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 471 ----------ADGLT--VLAVLKDGRPVQSANAGDAVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H  I+  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGILSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGTHVQQKGSMVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TGQ A  ++  ++ +L   A  L  S  +VV ++  + +  ++L  +L
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAADLLGGSAADVVEKIRALGQRQKQLEREL 753

Query: 773 IHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+      DLS    ++A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 ESVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++ KA+++  V    + +  A +L    A  + GG GGGRP +AQ GG +G
Sbjct: 814 -AQDGKAALVAGVNGSAMGKVKAGELLSHIAGQI-GGKGGGRPDLAQGGGEDG 864


>gi|241662427|ref|YP_002980787.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240864454|gb|ACS62115.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 893

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/917 (41%), Positives = 545/917 (59%), Gaps = 61/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    
Sbjct: 15  KASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAA 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L  
Sbjct: 75  SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPA 134

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEI
Sbjct: 135 EKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEI 194

Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229
           F+D G  + GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG
Sbjct: 195 FYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMG 254

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           +ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG
Sbjct: 255 MERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDG 312

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + E
Sbjct: 313 VIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVVE 372

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+ C 
Sbjct: 373 VLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDV-CR 431

Query: 408 RGLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                +D  +F+ A+  QR +ARA     + +GT       L      T F GY+ L   
Sbjct: 432 ENDVIVDEAAFDAAMTRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYEQL--- 481

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             ++E                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 482 --VRE-----------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 523 QVGDQGTLKAATVWFDVVDTLKLQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 583 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 643 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIG------SSKELCGGTHVARTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 697 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIVQVQDQ 756

Query: 767 YRKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L  +L   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+Q
Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L G   + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 817 TAAIVL-GSVTDGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874

Query: 882 GNKADQAIAGVASFLKK 898
            +   QA+AGVA+++++
Sbjct: 875 PDNLPQALAGVAAWVQQ 891


>gi|326339235|gb|EGD63050.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
          Length = 833

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/854 (44%), Positives = 532/854 (62%), Gaps = 56/854 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N   
Sbjct: 61  KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q 
Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  
Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL-- 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   
Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYD
Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I        
Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ V+   +GQ+  
Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+   ++ 
Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQ 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E+
Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           +++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ 
Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  LK  
Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSK 807
             N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE   V+ K
Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799

Query: 868 GGGRPHMAQSGGPN 881
           GGGRP MAQ+GG +
Sbjct: 800 GGGRPDMAQAGGTD 813


>gi|330953630|gb|EGH53890.1| alanyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 874

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGRS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDVTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|22096207|sp|Q9PH22|SYA_XYLFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 884

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/910 (41%), Positives = 556/910 (61%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE IPGG PGS  E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N  +  RVI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSL--RVIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG++ +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           ++ F  A+ +QR  ARA     G G   ++          T F+GY+ L+          
Sbjct: 424 MVGFEAAMTQQRKTARAAG-KFGRGV--QLSAERAAMLSPTVFLGYEQLQADGLR----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 476 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 IG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +  DG+RL++TD QK       H A + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV Q GS + PD LRFD +H +PI +A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMGT------SVELCGGTHINRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    + DL  +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|15836729|ref|NP_297417.1| alanyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|9104908|gb|AAF82937.1|AE003866_2 alanyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 916

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/908 (41%), Positives = 556/908 (61%), Gaps = 50/908 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V  V
Sbjct: 42  SKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVADV 101

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L   R
Sbjct: 102 QCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPPER 161

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EIF+
Sbjct: 162 LLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEIFY 221

Query: 178 DQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE IPGG PGS  E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A +
Sbjct: 222 DHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLAAI 281

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ    NY+IDLF+ LI  + ++T +    N  +  RVI DH R+ +FLI DG+LP+NEG
Sbjct: 282 LQHVHTNYEIDLFQTLILKAAELTAVADVQNKSL--RVIADHSRACAFLIVDGVLPSNEG 339

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E+E
Sbjct: 340 RGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAEEE 399

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG++ +D++
Sbjct: 400 RFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VDMV 457

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ +QR  ARA     G G   ++          T F+GY+ L+            
Sbjct: 458 GFEAAMTQQRKTARAAG-KFGRGV--QLSAERAAMLSPTVFLGYEQLQADGLR------- 507

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  + 
Sbjct: 508 ---------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTLMA 552

Query: 537 -DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG+RL++TD QK       H A + +G ++    L  ++    R+ +++NHSATHLLH 
Sbjct: 553 SDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLLHC 612

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL ++ G+HV Q GS + PD LRFD +H +PI +A++  IE  VND +  N  V+   M 
Sbjct: 613 ALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQMG 672

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE  
Sbjct: 673 MQAALDAGAMALFGEKYGEHVRVVTMGT------SVELCGGTHINRTGDIGLFKIISECG 726

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+    
Sbjct: 727 VSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERELE 786

Query: 776 KRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K +L    + DL  +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L G+
Sbjct: 787 KLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLAGV 846

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A+ 
Sbjct: 847 TGGKVALVTAVNGRRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRSALD 905

Query: 891 GVASFLKK 898
           GVA+++K+
Sbjct: 906 GVATWVKQ 913


>gi|167627901|ref|YP_001678401.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|205830099|sp|B0TZY8|SYA_FRAP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167597902|gb|ABZ87900.1| Alanine--tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 865

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/894 (43%), Positives = 537/894 (60%), Gaps = 45/894 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W    GL  ++IIRI +NDNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLER+A VLQ+
Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI+ +++VT    +  N  + +V+ DH+RS +FLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNA--DDINSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  +  L K +I++G++AF+LYDT+G PLD+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDTEIVSL-KSDIISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + + +Q+ R++       +G     + S+      + F GY  L       ED KVL   
Sbjct: 417 EQMLKQKQRSKE------AGKFNVDYNSIINSQAKSDFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G+ V    +G    +V D+TPFYAE+GGQ+GD G   G G+
Sbjct: 462 --------------EIYQDGQPVNAIQAGSTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +GIL T   +   ++   R   + NHSATHLLH  L  
Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKVLKI 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSH  Q GS +  + LRFD TH K I+  E++ IE  VN  I  N PV T   ++E A
Sbjct: 567 ILGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  IVSES I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK- 778
           IRRIEAIT  +A  +    + KL ++    K +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 IRRIEAITANKAIKYTFATENKLAAIKEITKSNDSNLLDKLQSMLEQLKNQEKEIAKLKK 741

Query: 779 --LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             L     D+    I  +  +   +  VD K L+  +D  + K    + +L  I+ + K 
Sbjct: 742 DILSGANSDIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVLSTINAD-KV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             +I V++ +     A D+A+  +  +  G GGGRP MAQ GG N    D+A++
Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALS 853


>gi|224369825|ref|YP_002603989.1| alanyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|223692542|gb|ACN15825.1| AlaS1 [Desulfobacterium autotrophicum HRM2]
          Length = 872

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/897 (42%), Positives = 552/897 (61%), Gaps = 47/897 (5%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67
           R  F+E+F+K+ H  + SSSL+P +DPTL+FTN+GMV FK +FTG EK  Y    T QKC
Sbjct: 7   RRLFIEYFEKHHHHHVRSSSLVPSDDPTLLFTNAGMVQFKRVFTGDEKRDYSLAVTSQKC 66

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
           VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI+ AWDLLT  +  D  +L++
Sbjct: 67  VRAGGKHNDLENVGYTARHHTFFEMLGNFSFGQYFKDKAIEFAWDLLTNGYGFDPEKLWV 126

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
           +VY +D+EA+ +W+   G+   +I+R+   DNFWSM +TGPCGPCSEI  D+GE    G 
Sbjct: 127 SVYLDDDEAYNIWRDKIGVPESRIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGEKYGCGS 186

Query: 188 PGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           P  +   E +RY+E+WNLVFMQF++    +   LPK SIDTG+GLER+ +VLQ+   NY+
Sbjct: 187 PDCAVGCECDRYLELWNLVFMQFDRDATGKMTPLPKPSIDTGLGLERVISVLQDVPTNYE 246

Query: 246 IDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
            DLF  +++  E ++G+K + +  N V  +VI DH R+++FLI DGILP+NEGRGYVLRR
Sbjct: 247 TDLFLPIMERVEVLSGLKKDASRENSVAMKVIADHSRAAAFLICDGILPSNEGRGYVLRR 306

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           IMRRA+ Y R LG   P +   +  +   M  AYPEL ++   I   +++E+ +F +TLD
Sbjct: 307 IMRRAIRYGRNLGLVRPFLHETVQQVFEIMEQAYPELKESSAFILNVVKNEEAKFSETLD 366

Query: 364 RGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            GL LL+  +      G  +I  GDV FKLYDT G P+DI+ D++  R +  +D+  +N+
Sbjct: 367 VGLRLLNETIEKTEASGAKQIA-GDVIFKLYDTFGFPVDIINDVVADRAIT-LDMDGYNR 424

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+++QR+R+++  +  G G   K   S   K   T+F GY  L                 
Sbjct: 425 AMDDQRARSKSSKIFAGVGEAYKTLTSQGVK---TEFTGYTDLE---------------- 465

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   +S V  IV+    V  A  G ++E+V   TPFYAE+GGQ GD+G     G  
Sbjct: 466 -------TTSEVLLIVKNDVAVTTAGQGDQIEIVTRATPFYAESGGQAGDSGVIKTKGCT 518

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + + +      G+ +HH  V  G L+T+ ++++ +D + R   ++NH+ATHLLH AL  +
Sbjct: 519 VAVDNTLADPSGLRIHHGKVVSGALQTKANVLMVVDQEQRAATAMNHTATHLLHAALRKV 578

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q+GS +T D LRFD TH   IT  E++++E  VN  I +N+PV T  M+ ++A+
Sbjct: 579 LGDHVKQSGSLVTKDRLRFDFTHFAAITRQEIEAVESEVNLRIRENVPVATIEMDMDEAV 638

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL   KY DRVRVVS+        S  LCGGTH   +G I L  IVSE  I +GI
Sbjct: 639 KSGATALFEEKYGDRVRVVSM-----AGFSKELCGGTHTDRSGNIGLFQIVSEGGIASGI 693

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRIEA+TG RA  ++ G    +   +  LK ++G VV +V+ +  + +    +++  K K
Sbjct: 694 RRIEALTGARALDYVHGITADILETSRVLKSARGEVVEKVKTLVADKKAADKEIVSLKAK 753

Query: 779 L-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +   +VE++     +I  V  +S ++   +  +L+ + D  + KI SG+++L G     K
Sbjct: 754 IASKSVENMDDDIREIDGVRIVSKLVQIDNPSQLRDLADKFKAKIGSGVVLL-GAESNGK 812

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           A ++ VV++DL  RF A  + + +A ++ GGGGGGRP MAQ+GG      ++A+A V
Sbjct: 813 ALLVSVVSDDLTKRFKAGAIVKKAAAIV-GGGGGGRPDMAQAGGSKPEFLERALASV 868


>gi|226945497|ref|YP_002800570.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|226720424|gb|ACO79595.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 874

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/913 (44%), Positives = 550/913 (60%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   L  
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWEFLTSPKWLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W +  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYASDDEAYDIWTRTVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS+EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPEIWGGPPGSAEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ AS Q  G   +G   +  +V+ DH+RS SFLIADG+ P+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLAASAQAIGCANDGAPSL--KVVADHIRSCSFLIADGVTPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG AYPEL Q +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVGALAAEMGDAYPELRQQRAQIERVLKNE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKILEQDLAGLAA-KVIPGDVVFKLYDTYGFPADLTADIARERDLT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + GL        + SL +    T F GY             
Sbjct: 420 EEGFEREMQAQRERARSASAFGLD-------YNSLVKVDADTLFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG- 532
                    + T G   +V A+ + G  VE    G++  VV D+TPFYAE+GGQ+GD G 
Sbjct: 460 ---------EETFGQGQVV-ALFKGGATVERLGEGEEGVVVLDRTPFYAESGGQVGDCGY 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            +   G+R  + D  K   G  +HH +V +G L    +L   +D   R   ++NHSATHL
Sbjct: 510 LSDASGVRFDVRDTTKVG-GAHLHHGVVAKGGLHVGQALEAQVDGSVRGATALNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD +H + +T+ ++K++E  VN  I +N  V T 
Sbjct: 569 LHAALRRVLGEHVQQKGSLVNSQRLRFDFSHFEALTTEQIKALEALVNTEIRKNTAVETE 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +++ + A   GA AL G KY D VRV+S+     G  S  LCGG H   TG+I L  IV 
Sbjct: 629 VIDIDSAKKKGAMALFGEKYGDNVRVLSM-----GDFSIELCGGIHARRTGDIGLFKIVG 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AG+RRIEA+TG  A  +L   +E+LK +A  LK S+ N++ ++  + E  R+L  
Sbjct: 684 EGGVAAGVRRIEAVTGAGALDYLNAAEEQLKEVAGLLKGSRDNLLDKLAGLLERNRQLEK 743

Query: 771 QLIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K      +DL  S  ++A V  +S  +  +D K L +++D L+ K+ S +I+L
Sbjct: 744 ELEQLKAKAASAAGDDLAGSAIEVAGVKVLSARLDGLDGKALLALVDQLKNKLGSAVILL 803

Query: 828 VGISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            G   E    V++V  VT+D++ +  A DL +  A  + GG GGGRP MAQ GG    K 
Sbjct: 804 GG---EFDGKVVLVAGVTQDMIGKLKAGDLMK-QAAAVVGGKGGGRPDMAQGGGSEAGKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A V  F+++
Sbjct: 860 DEALALVRPFVER 872


>gi|218710534|ref|YP_002418155.1| alanyl-tRNa synthetase [Vibrio splendidus LGP32]
 gi|218323553|emb|CAV19764.1| Alanyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 860

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/916 (41%), Positives = 542/916 (59%), Gaps = 81/916 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF++W K  G+ ADKI+RI          +DNFW+M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK ++DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G     N  +  RVI DH+RS SFLIADG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQSL--RVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L  L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 362 EEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+E QR RAR A   G     T K+  +       T+F GY    G       
Sbjct: 420 DEAGFEKAMEAQRKRAREAGQFGTDYNATIKVDTN-------TEFCGYTGTEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------AGEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +   +D + R  +S+NHSATHL
Sbjct: 510 TLSTASGLFKVQDTQKLGNA-FSHHGELVEGVFAQGDKVEARVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           E  I AG+RRIEA+TG+ A   +  Q    +EKL   A   K  +              +
Sbjct: 684 EGGIAAGVRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKSLE--------------K 729

Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++QL+  K        +   VE++S  K+     +   I   D+K L++++D  + ++ S
Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGS 784

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GII++  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + 
Sbjct: 785 GIILIANVA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDV 842

Query: 883 NKADQAIAGVASFLKK 898
               +A+  V  +L++
Sbjct: 843 EALPEALKSVRIWLEE 858


>gi|262195176|ref|YP_003266385.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262078523|gb|ACY14492.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 890

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/920 (42%), Positives = 551/920 (59%), Gaps = 62/920 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R++FL+FF   GHE + S+SL+P  DPTL+FTN+GMVPFK++FTG +       T
Sbjct: 2   KAAQVRSSFLDFFAARGHERVHSASLVPVGDPTLLFTNAGMVPFKDVFTGHQTRAIPRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVRAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ + +D+
Sbjct: 62  SSQKCVRAGGKHNDLDQVGKTARHHTFFEMLGNFSFGDYFKKDAIAWAWELLTEVYGIDK 121

Query: 123 RRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RL ITV+          D+EA  +W +++G+ +++II +  ++NFW M ETGP GPCSE
Sbjct: 122 ERLVITVFAGDSELGVGADDEARAIWGEVTGMPSERIIGLGKSENFWMMGETGPMGPCSE 181

Query: 175 I-FFDQGECIPGGLPGSSEEG---ERYIEIWNLVFMQFEQQNKQERF-ILPKMSIDTGMG 229
           I +F  G+  P  LPG+  +      ++EIWNLVFMQ+E++        LP  SIDTG G
Sbjct: 182 IHYFGAGK--PDALPGTDPDAPVWSGWLEIWNLVFMQYERREPGGALHKLPAPSIDTGAG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+ +VLQ  ++NYD DLF+ L+ ++ ++ G +Y  +G+   + RVI DH R+++FL+A
Sbjct: 240 LERVTSVLQGVSSNYDTDLFQPLLHSAAELCGKRYGEDGDADTSMRVIADHARATAFLVA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P    + YVLRRI RRA+ + +LLG  EP M  +   +  EM  AYPEL +   +I
Sbjct: 300 DGVFPDKTDKEYVLRRIFRRAVRHGKLLGIEEPFMHRMCARVVEEMKDAYPELAERATVI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E    E++RF  TLDRGL LL+     +   K   ++GD  F+LYDT+G P D+ + I 
Sbjct: 360 HEITLEEEKRFRATLDRGLNLLEEEFGRMQAAKSSTVSGDKVFQLYDTYGFPSDLTEIIA 419

Query: 406 CARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              G  GID   F + LE+ R R++ AHS G+G G   +++ +L  + GAT F+GY+   
Sbjct: 420 DEHGY-GIDHEGFREELEQARERSKAAHSTGVGEG---EVFKTLAGELGATSFLGYE--- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSI--VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                 G+S    V A+V  GE VE A +G +V    DQTPFYA
Sbjct: 473 --------------------GEGLSGSGQVMALVVDGERVERAEAGAQVAFACDQTPFYA 512

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E+GGQ+GD G A  + G R++I D +K +   FVH   V  G +     L   +D + R 
Sbjct: 513 ESGGQIGDCGEARSEAGARVRIDDTRKPSGDTFVHIGEVLEGAIALGDQLGFEVDGERRA 572

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NHSATHLLH AL   LG HV+Q GS + PD LRFD  H  P++  + + +ED VN 
Sbjct: 573 RIRANHSATHLLHLALKKTLGDHVAQKGSSVGPDRLRFDFAHFSPMSDEQTQQVEDWVNA 632

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I +N   VT +M+  +A   GA A+ G KY D+VRVV +     G  S   CGGTHV  
Sbjct: 633 EIRKNRDSVTDVMSLSEAKERGAVAMFGEKYGDKVRVVGI-----GSESLEFCGGTHVHR 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            G+I L  IVSESS+  G+RRIEA+TG  A  ++   + +L ++   LKV+   V GRV+
Sbjct: 688 AGDIGLFKIVSESSVAQGVRRIEAVTGAGALEYVRRVEGELSAVGGRLKVAPLEVAGRVD 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           ++ EE R  +   A+ K +L      DL     +IA V  ++      D+K L++  D L
Sbjct: 748 KLQEELRAREREVAELKAKLAAGGSRDLMSEVEEIAGVKVLAVATEVDDAKTLRTTGDTL 807

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + ++ SG+++L G+  E K ++L +V++DL  R +A  L +  A+ L GG GGGRP MAQ
Sbjct: 808 RDRLGSGVLLLCGVG-EDKVALLAMVSKDLTKRVHAGKLLQAVAETL-GGRGGGRPDMAQ 865

Query: 877 SGGPNGNKADQAIAGVASFL 896
            GG + ++   A+    SFL
Sbjct: 866 GGGKDPSQVPAALERARSFL 885


>gi|57238881|ref|YP_180017.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578810|ref|YP_197022.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81557351|sp|Q5HC27|SYA_EHRRW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57160960|emb|CAH57866.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417436|emb|CAI26640.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 887

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/892 (42%), Positives = 537/892 (60%), Gaps = 55/892 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS +R  F++FF KNGH+  PSS L+  +DP+L+FTN+GMV FK  FT  +        +
Sbjct: 7   VSDLRRLFIDFFVKNGHQFFPSSQLVIKDDPSLLFTNAGMVQFKQRFTSVDDRSINTAVS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAWD +TKE  LD++
Sbjct: 67  SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKERAIELAWDFVTKELALDKK 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D++AF LWKKIS  S DKII+I TNDNFWSM   GPCGPCSEIF+D GE +
Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ EE G R+ EIWNLVFM++ +  + E  +LP+  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTEEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI  S++ +G     +  + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDINLFKALIAMSKKESG---NSSCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L YT+ LM  + P L  E     M   YPEL +AK LI   L++E+E 
Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELFKAKDLIISILKTEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L++L   ++L+GD+ F+LYDT+G P+DI  DI+  RG+   D   
Sbjct: 364 FKDTLVRALPLLEKELTYLSTGDVLSGDIIFRLYDTYGFPVDITLDIIKERGIR-FDEKG 422

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +E+Q++R+R +H +        KIW  +++ Y  T+F+GYD  +            
Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQVQ---------- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533
                       S I+  ++     V  A  G KV ++ D TPFYAEAGGQ  DTG    
Sbjct: 473 ------------SKILSMVMNNDRNVTVANVGDKVSILMDITPFYAEAGGQQADTGLLSV 520

Query: 534 -------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
                    G      +T+ +   +G+++H  IV+ G L     +   I+   R+ L  N
Sbjct: 521 VRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIVKSGSLIIGDIVSAEINSHRRKDLCAN 580

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH+ L   + +++ Q GS +  D LRFD +++  +T  ++K IE+ + D+I QN
Sbjct: 581 HSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQN 640

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            PV T I N ++A+ +GA AL   KY N  VRVV++       +S  LC GTHV  TGEI
Sbjct: 641 HPVETNICNLQNAMDNGAIALFTEKYDNHEVRVVNIG------NSKELCCGTHVKYTGEI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SESSI  GIRRIEA+TGQ A  +   Q++ L  +A  +K    +V+ ++++I  
Sbjct: 695 GCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKINR 754

Query: 766 EYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           E ++L Q + A     ++++ ++  KI ++NF+   +S V    +  V   + K++   +
Sbjct: 755 ENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSSV---PIDVVRKFIMKRLVKDM 811

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           IML           ++ V   L  +  A D  ++   V+   GGG    +AQ
Sbjct: 812 IMLFSNVVNHNKIYVVGVGNSLHSKVKAADFVKIIGCVVKSKGGGN-AQLAQ 862


>gi|66046785|ref|YP_236626.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|63257492|gb|AAY38588.1| Alanyl-tRNA synthetase, class IIc [Pseudomonas syringae pv.
           syringae B728a]
          Length = 899

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 29  AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 88

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 89  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 148

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 149 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 208

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 209 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 268

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 269 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 326

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 327 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 386

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 387 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 444

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 445 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 484

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 485 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 534

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 535 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 593

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T  
Sbjct: 594 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 653

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 654 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 709

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 710 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 769

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 770 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 828

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 829 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 886

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 887 ALALAVPFVEQ 897


>gi|83305856|sp|Q4ZQI4|SYA_PSEU2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|208779166|ref|ZP_03246512.1| alanyl-tRNA synthetase [Francisella novicida FTG]
 gi|208744966|gb|EDZ91264.1| alanyl-tRNA synthetase [Francisella novicida FTG]
          Length = 865

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/901 (43%), Positives = 539/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|271501699|ref|YP_003334725.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345254|gb|ACZ78019.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 875

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/909 (43%), Positives = 551/909 (60%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQIVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTSSQWFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYASDDEAYDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NYDIDLFK LI  + +V G     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 ISAVLQHVNSNYDIDLFKTLIAEAARVVGTDDLNNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + + L+E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIEVMGAAGEELKRQQSLVEQALK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL+LLD  +  L K + L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 NEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR RAR  S G G+      + SL     +T F GY            
Sbjct: 420 VDEAGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDASTSFCGY------------ 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     + T   S++V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD G
Sbjct: 462 ----------ERTEQQSTVV-AIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +       + D QK  + I  H   + +G+LR    +   +D+  R ++ +NHSATHL
Sbjct: 511 ELVSAAACFSVADAQKYGQAIG-HIGSLAQGVLRVNDKVNAVVDHVRRDRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +   +++ +ED VN  I +NL + T 
Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLSIDTD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A A GA AL G KY++ VRV+S+     G  S  LCGGTH   TG+I L  IVS
Sbjct: 630 VMALDAARAKGAMALFGEKYDEHVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIVS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A   L  Q + L  +   +K     +  +V  + E  R L+ 
Sbjct: 685 ESGTAAGIRRIEAVTGENAIVALHEQSDVLHEVTQLVKGDSNTLADKVRSLLERNRGLEK 744

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ S       +I  V  +   ++ V+ K L++++D L+ ++ S +I+L
Sbjct: 745 ELQQLKEQQAAQESSSLSSKAKEINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIVL 804

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K S++  VT++L +R  A +L    A  + GG GGGRP MAQ+GG + +    
Sbjct: 805 STVA-DGKVSLIAGVTKELTNRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALPS 862

Query: 888 AIAGVASFL 896
           A+  V +++
Sbjct: 863 ALTSVEAWV 871


>gi|254513877|ref|ZP_05125938.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219676120|gb|EED32485.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 867

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/880 (43%), Positives = 543/880 (61%), Gaps = 48/880 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL +F+ + H+ +PSSSL+P +DPTL+FTN+GM  FK++F G E   Y    + Q+
Sbjct: 6   IREAFLAYFESHDHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAESRPYHRAVSAQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI+ AWD LT E  L + RL+
Sbjct: 66  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKSQAIRFAWDFLTVELGLPKERLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TV+  D+EA ++W +  G  A++I R+   DNFW M +TGPCGPCSE+F+D GE +PGG
Sbjct: 126 VTVHLSDDEAERIWIEEIGFPAERISRL-DEDNFWQMGDTGPCGPCSEVFYDHGEDVPGG 184

Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            PGS ++  +RYIEIWNLVFMQ+ +    +   LPK S+DTGMGLER+A +LQ   +NY+
Sbjct: 185 PPGSPDDDLDRYIEIWNLVFMQYNRSADGQMTPLPKPSVDTGMGLERIAAILQGVHSNYE 244

Query: 246 IDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           ID+F+ LI A+ +V G    E +++   RVI DH+RSS+FLI DG+LP NEGR YVLRRI
Sbjct: 245 IDVFQALIAAAAEVVGATDLEASSL---RVIADHIRSSAFLIIDGVLPGNEGRSYVLRRI 301

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           MRRA+ +   LG TE     L+  L  +MG  YPEL   +  IEE +R E+E+F +TL++
Sbjct: 302 MRRAIRHGNKLGATELFFSKLVAPLAAQMGDFYPELRAQQARIEEVIRGEEEQFARTLEQ 361

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ +LD  L+ L  D ++ GDV FKLYDT+G P+D+  DI   R  + +D+  + +A++ 
Sbjct: 362 GMEILDEALADLQGD-VIPGDVVFKLYDTYGFPVDLTNDIARERNFS-LDMAGYERAMQV 419

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR R++    G G         +L+   G T F GY+ + G                   
Sbjct: 420 QRERSKE---GGGFSVDYNSTLTLE---GETVFTGYEHVAG------------------- 454

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
               S+ V A+++  E V +   G+   V+ DQTPFY E+GGQ GDTG     G+ L++T
Sbjct: 455 ----SAQVVALLRDAEQVMQLAEGESGVVILDQTPFYGESGGQAGDTGYLSAQGLSLEVT 510

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           D   KA+G  +HH  V +G +    +L   ID + R+   +NHSATHLLH AL   LG H
Sbjct: 511 DT-TKAQGHHLHHVKVLQGTVSVGDTLDCRIDNEVRQNTRLNHSATHLLHAALRNELGDH 569

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V+Q GS +    LRFD ++ + ++  +L+++ED+VN  I  N  V T++M  +DA  +GA
Sbjct: 570 VTQKGSLVDAQRLRFDFSNPEAMSDEQLRAVEDSVNAQIRANTDVHTQLMTMDDAKNAGA 629

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL G KY D VRV+S+  +DG   S  LCGGTHV  TG+I LL I+SE  + +GIRRIE
Sbjct: 630 MALFGEKYGDEVRVLSMG-QDG--FSVELCGGTHVQRTGDIGLLRIISEGGLASGIRRIE 686

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLN 782
           A+TG  A +H+   D  L  +   ++ +  NV  +V  +    R L  +L   K+KL  +
Sbjct: 687 AVTGANALAHMRSVDGALAGVCDAVRGTTDNVADKVAALRSANRDLEKELARLKQKLASS 746

Query: 783 V-EDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
              D++   I    +  ++  +   D   L+ +MD  + K+ S +I+L  ++ +K A ++
Sbjct: 747 AGSDITASAIEVDGIKVLATAVDGADPGALRGIMDQCKSKLGSAVILLAAVNDDKVA-LV 805

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             VT+DL +R  A DL +  A  L GG GGGRP MAQ GG
Sbjct: 806 AGVTKDLTERVRAGDLMKEFAGRL-GGKGGGRPDMAQGGG 844


>gi|237799115|ref|ZP_04587576.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021969|gb|EGI02026.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 874

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/892 (44%), Positives = 532/892 (59%), Gaps = 59/892 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G   E  N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCNNE--NQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY    G        
Sbjct: 420 EEGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGYSATTG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ V A+ ++G  V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 465 ---------------SATVVALYKEGLSVTHLNEGEEGVVILDSTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R  ++D  K   G F+HH +V  G L     +   +  + R   ++NHSATHLL
Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLNVGAQVETQVADEVRDATALNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PV+T  
Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNTEIRKNTPVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  IVSE
Sbjct: 629 TDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHAKRTGDISLFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAAQDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|256830944|ref|YP_003159672.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256580120|gb|ACU91256.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 879

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/916 (41%), Positives = 547/916 (59%), Gaps = 55/916 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FLE+FQ++GH + PSSSL+P +DPTL+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MISAGEIRKRFLEYFQQHGHSVQPSSSLVPQDDPTLLFTNAGMVQFKKIFLGQEKRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+LAW+ +T E  L
Sbjct: 61  AATSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRLAWNFVTVELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++++ +D+EA +LW+K++ +  ++I R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 DKEKLFVSIFRDDDEAGELWQKVASVPGERIFRLGEKDNFWAMGDTGPCGPCSEIYVDQG 180

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C P    G   + +RY+EIWNLVFMQF +        LPK SIDTGMGLER+  V 
Sbjct: 181 ADMACGPDCGIGKC-DCDRYLEIWNLVFMQFNRSEDGTLTPLPKPSIDTGMGLERITAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K +N+D DLF+ LIQA  +  G+ Y    ++    RVI DH RS +FL+ADG+LP+NE
Sbjct: 240 QGKRSNFDTDLFQGLIQAMAKKAGVAYHQGEDSDTALRVIADHSRSIAFLLADGMLPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + +LLG+ EP +      + +EMG  +PEL+ ++  +   +R E+
Sbjct: 300 GRGYVLRRLIRRAYRFGKLLGFDEPFLCETTDQVVSEMGDTFPELVASREFMVRVVRQEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERFG+TLD+GL +L+  ++ L     + + G+ AFKLYDT+G PLDI+ DI   +G   +
Sbjct: 360 ERFGETLDKGLRILEDEMASLAAAGSKTITGETAFKLYDTYGFPLDIVNDIAEKQGFL-V 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +  Q+ +++    G G       + +L      ++FIGYD L  +       
Sbjct: 419 DEAGFREHMSVQKKKSKQAWAGSGDKGLAGQFAALMGAGLESEFIGYDCLAAT------- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S IV  +  +G+ VE   SG    V   +TPFY E+GGQ+GDTG 
Sbjct: 472 ---------------SRIVALLDAEGQPVERLRSGVGFMVTL-KTPFYGESGGQMGDTGR 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D  K A  + VH   +  G +  +  + L ++   R   + NHS THLL
Sbjct: 516 VQAPTGSARVLDTLKPAPALIVHKIEIGGGEILADQEVELFVEEGERIATARNHSTTHLL 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + P  LRFD TH   ++  EL+ +ED VN  I  + P+VT++
Sbjct: 576 HAALRRVLGEHVKQAGSLVGPSRLRFDFTHISGLSPEELRQVEDEVNRAILADAPIVTQV 635

Query: 654 MNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           M+ + A+    A AL G KY   VRVV +  E     S  LCGGTH++STG+     ++S
Sbjct: 636 MSYDAAVQQKQAMALFGEKYEADVRVVEMAGE-----SVELCGGTHLASTGQAGSFALLS 690

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YR 768
           E+ I AG+RRIEA+TG  A  H   Q E+++++A+ LK +   +  ++  + ++     +
Sbjct: 691 EAGIAAGVRRIEALTGWDALRHWQAQREEVRTVAATLKAAPHELGKKIIALQDQGKALAK 750

Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +LQ + A+      R L    +D+S  K+     ++  +   D   L+++MD L+ K+ S
Sbjct: 751 ELQTLQARVMSESGRDLASEAKDISGMKV-----LARKVDAPDMNALRNLMDDLRSKLSS 805

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GII L     + KA +++ V++DL  R+ A  L +  +  +  GGGGGRP +AQ+GG   
Sbjct: 806 GIIALAA-EIDGKAMLVLAVSKDLHGRYTAPALIKEVSDEI-KGGGGGRPELAQAGGSEP 863

Query: 883 NKADQAIAGVASFLKK 898
               +A+A + +FL K
Sbjct: 864 EGISRALAKLEAFLSK 879


>gi|157364647|ref|YP_001471414.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|205830273|sp|A8F866|SYA_THELT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157315251|gb|ABV34350.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 858

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/902 (42%), Positives = 556/902 (61%), Gaps = 60/902 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  VTT QK
Sbjct: 6   LRSAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVTTCQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L++ RL+
Sbjct: 65  CLRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKKEAIIWAWEFVTEVLKLEKDRLW 120

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG---EC 182
           ITVY+EDEE+FK+WK I G+   KIIR+  + NFW  A  TGPCGPCSEI +D G   +C
Sbjct: 121 ITVYEEDEESFKIWKDIVGVCEKKIIRMGKDTNFWGPAGPTGPCGPCSEIHYDTGLNEDC 180

Query: 183 IPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G   P +S+  +R++EIWNLVF +F Q  K   + LP+ +IDTG GLER+A+V+Q+  
Sbjct: 181 SDGECTPANSD--KRFLEIWNLVFTEFYQDEKGALYPLPRKNIDTGAGLERVASVVQKVE 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +N++ D+FK +I   E V G++Y+ +    ++ RVI DH R+ SFLIADG+ P+NE RGY
Sbjct: 239 SNFETDIFKPIISKIEDVLGVEYKKDEQKDISIRVIADHSRAVSFLIADGVFPSNEERGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +  LLG  +P +  +   +   MG+ Y EL   K LI E  R+E+ERF 
Sbjct: 299 VLRRILRRAVRHGVLLGAQKPFLHLINETVIEHMGNTYSELKNRKDLILEVTRAEEERFF 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT+ +G  +L  ++S   K  +++G+  FKLYDT+G P DI+ D+     L  +D+  F 
Sbjct: 359 KTISQGNEMLRDIISRSSK--VIDGEDVFKLYDTYGFPPDIVVDVAKDYNLK-VDLEGFE 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++ QR RAR+    +    +++I+  L +K   T F+GYD L             C+ 
Sbjct: 416 KLMKIQRERARSARNNVEYAKSQEIYDELAQK-SKTVFVGYDTLE------------CEA 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             I L                      SG K E VFD+T FYAE GGQ+ D G  + DG 
Sbjct: 463 KVIFLKK--------------------SGTKYEAVFDKTSFYAERGGQVSDVGQIVWDGG 502

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +  V    EGI VH   VE+G L+    + L +D + R   + NH+ATHLLH AL  
Sbjct: 503 SASVEHVFIPVEGIIVHIINVEKGELKEGTKVRLIVDREKRLSTARNHTATHLLHAALRK 562

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV Q GS +TP+ LRFD TH KP+T  EL SIE+ VN+II +++PV+T   + ++A
Sbjct: 563 VLGTHVKQAGSLVTPEKLRFDFTHHKPLTDNELMSIENMVNEIILRSIPVITEEKSYKEA 622

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +A GA AL G KY D VRVV V        S  LCGGTHV +TG I L  IVSES+I +G
Sbjct: 623 VAEGAIALFGEKYGDVVRVVKVHS-----FSEELCGGTHVKNTGNIGLFRIVSESAISSG 677

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKR 777
            RRIEAITG    ++L  +++ + ++   L  SQ  ++ ++E + E+   LQ  L   K 
Sbjct: 678 TRRIEAITGFNTLNYLRVKEQLVGNICEKLGTSQDEILSKIENLIEKNINLQKELQQFKS 737

Query: 778 KLQLN-VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           KL ++ ++     +I ++ F+  + ++++S EL+++ D       S + +L   SK+ K 
Sbjct: 738 KLLVSQLKQTPFEQIKNIRFVHCVFNDIESNELRNLSDIAVAGENSTVALLFSTSKD-KV 796

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++++ VT+DL  +  A D+A+ +A++L  GGGGGRP  AQ+GG + +K +  I      L
Sbjct: 797 NLIVRVTQDLAKKIKAGDIAKYAAQIL-EGGGGGRPDFAQAGGKDPSKINSVIEYTRKLL 855

Query: 897 KK 898
           ++
Sbjct: 856 EQ 857


>gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300075693|gb|ADJ65092.1| alanyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 874

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/914 (42%), Positives = 551/914 (60%), Gaps = 63/914 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  FL+FF+   H ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y    
Sbjct: 2   NSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 62  SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY  D+EA+ +W K  GL  ++++RI  N       DNFW MAETGPCGPCSEI
Sbjct: 122 DKLWATVYQTDDEAYDIWTKDIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229
           F+D G  + GG PGS + +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG
Sbjct: 182 FYDHGPDVWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMG 241

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           LER+A +LQ   +NY+IDLF+ LI+A+ + TG     N   + RVI DH+R++SFLI DG
Sbjct: 242 LERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSN--ASLRVIADHIRATSFLIVDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGRGYVLRRI+RRA+ +   LG T+P    L+  L  +MG+AYPEL +A   +E 
Sbjct: 300 VIPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFHKLVKDLVVQMGAAYPELPEAAERVEM 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            L+ E+ERFG+TL+ G+ +L+  L ++ GK   L+G+ AF LYDT+G PLD+  DI   R
Sbjct: 360 VLKQEEERFGETLEHGMKILEAALAANTGK---LDGETAFTLYDTYGFPLDLTADICRER 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A+E Q+S ARA           K+  +++     T+F+GY+ L     
Sbjct: 417 NVE-LDEAGFTAAMERQKSAARAAG-------KFKMAAAIEYTGDKTRFVGYESL----- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               S+ V A+   G  V++  +GQ   VV D TPFYAE+GGQ 
Sbjct: 464 ------------------AQSAKVVALYVAGSPVQKIEAGQDAIVVLDTTPFYAESGGQC 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G          + D QK    +F HH  + +G L    ++   +D   R +   NHS
Sbjct: 506 GDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKGSLAVGDAVQAKVDADQRARTMRNHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LGSHVSQ GS +  D  RFD +H+ P+T+ E++ +E+ VN  +  N+ 
Sbjct: 566 ATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSHNAPMTAEEIRRVEEIVNREVLANVA 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++M  +DAIA+GA AL G KY D+VRV+S+        S+ LCGGTHV+ TG+I L 
Sbjct: 626 TGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT------STELCGGTHVTRTGDIGLF 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE  + AGIRR+EA+TG+ A + +     ++   A+ LK     ++ R+ ++ ++ +
Sbjct: 680 KIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPRIGQVQDQVK 739

Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSG 823
            L  +L   K KL  +  D   ++  D+N    ++  +   D   L+  MD L+ K+++ 
Sbjct: 740 ALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMDKLKDKLKTA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            I+L G  K+ K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    
Sbjct: 800 AIVL-GSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPA 857

Query: 884 KADQAIAGVASFLK 897
               A+ GVA +++
Sbjct: 858 ALPGALQGVAGWVQ 871


>gi|254372737|ref|ZP_04988226.1| hypothetical protein FTCG_00305 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570464|gb|EDN36118.1| hypothetical protein FTCG_00305 [Francisella novicida GA99-3549]
          Length = 865

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGDHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  +     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|330939519|gb|EGH42850.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 874

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRAADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVLFVEQ 872


>gi|71735960|ref|YP_275660.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|83305854|sp|Q48G25|SYA_PSE14 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71556513|gb|AAZ35724.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 874

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|330981768|gb|EGH79871.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 874

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|323142770|ref|ZP_08077483.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322417415|gb|EFY08036.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 874

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/904 (43%), Positives = 552/904 (61%), Gaps = 55/904 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+T+LEFF+KNGHE++ SSSL+P NDPTL+FTN+GM  FK+I+ G+E   Y   TT QK
Sbjct: 8   IRSTYLEFFRKNGHEVVRSSSLVPYNDPTLLFTNAGMNQFKDIYLGKETRPYLRATTAQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGK NDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW LLT+ F L +  L 
Sbjct: 68  CVRAGGKQNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIYYAWTLLTEGFKLPKESLT 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179
           +TVY +D EA+ +WK + GL A+KIIRI  N       DNFW M +TGPCGPCSEIF+D 
Sbjct: 128 VTVYADDNEAYDIWKNVIGLPAEKIIRIGDNKGGAFNSDNFWQMGDTGPCGPCSEIFYDH 187

Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G  + GG PGS EE G+R+IEIWN+VFMQ+ ++       L K  ID G+GLER+A VLQ
Sbjct: 188 GPGVWGGPPGSPEEDGDRFIEIWNIVFMQYNRKADGTFEKLKKPMIDNGLGLERIAAVLQ 247

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NYDIDLF+ LI  + ++  +       +  RVI DH+RS SFLIADG+LP+NEGRG
Sbjct: 248 GVHSNYDIDLFRTLIAKTAEILNVSDLSEKSL--RVISDHIRSCSFLIADGVLPSNEGRG 305

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RL+G  +     L+  LC  MG AYPELI+ + LIE+TL+ E+E+F
Sbjct: 306 YVLRRIIRRAVRHGRLMGAKDVFFYKLVGTLCELMGKAYPELIEQRQLIEKTLKKEEEQF 365

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLDRGL +LD  L  LG +  + G+V FKLYDT+G P D+ QD++  RG   +D+  F
Sbjct: 366 LNTLDRGLAMLDSELDKLGANRTIPGEVVFKLYDTYGFPADLTQDVVRDRGYI-VDMDGF 424

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + + +QR RA++ S   G    +++  S       + F GY+ L             C+
Sbjct: 425 EKEMTKQRERAKSAST-FGIDYNKELKLS-----DISIFDGYNHLS------------CE 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              + +  G            E +E A + ++V +V D+T FY E GGQ+GDTG  +  G
Sbjct: 467 GKIVSMFKG-----------SEPIESASTDEEVIIVLDKTTFYGEMGGQIGDTG-TLRCG 514

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L I +  K      +H   VE G      ++   +D Q R+ ++ +HSATHLLH AL 
Sbjct: 515 HNLFIVENTKHVGKAIIHVGRVELGQFSVGQTVTAEVDAQRRKDIASHHSATHLLHAALR 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS + PD LRFD +H  P++  E +++   VN  I +N PV T +M+   
Sbjct: 575 KVLGDHVFQKGSSVGPDRLRFDFSHPHPLSLDERQAVSALVNKAIRENYPVTTEVMDLNK 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL   KY   VRVVS+     G  S  LCGGTHV+ TG++    I+S+ SI +
Sbjct: 635 AKLSGAMALFDEKYEGEVRVVSM-----GEVSKELCGGTHVARTGDLGYFIIISDESIAS 689

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHA 775
           GIRRIEA+TG+ A  +       L   ++ L+    +V+ +V+ +    + L+   ++  
Sbjct: 690 GIRRIEALTGEAAIEYQQHLARMLAYTSTMLQTDNFSVLEKVKGLINNTKSLEHENMLLK 749

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISK 832
           ++ + ++ + L+ +   ++N +  +I++VDS   +EL+  +D L+  ++S  I+L G  +
Sbjct: 750 EKIVHMDAKALA-YDAVEINGIKIVIAKVDSYNARELRLAVDELKNHLKSCAIVL-GTVE 807

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +K S++  +++DL  +  A +L  ++A  +  G GGGRP MAQ+GG      D+A+   
Sbjct: 808 GEKVSLIAALSKDLTSKVKAGELVNVAASCV-NGKGGGRPDMAQAGGTKPEGLDEALEKA 866

Query: 893 ASFL 896
            +FL
Sbjct: 867 RTFL 870


>gi|257482821|ref|ZP_05636862.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628265|ref|ZP_06461219.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330866242|gb|EGH00951.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 874

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|330988706|gb|EGH86809.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 874

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--SDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|54297712|ref|YP_124081.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|59798487|sp|Q5X4B7|SYA_LEGPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53751497|emb|CAH12915.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 860

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/886 (42%), Positives = 547/886 (61%), Gaps = 60/886 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ   T 
Sbjct: 4   SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRAATA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +   R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G  + 
Sbjct: 124 LWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEVA 183

Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS  E+G+RYIEIWNLVFMQF +  +    +LPK S+DTGMGLER+A V+Q   +N
Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHLLPKPSVDTGMGLERLAAVIQGVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNH---RVIVDHLRSSSFLIADGILPANEGRGY 299
           Y+ID F++LI+A  Q+      G NI +NH   +VI DH+RS SFLI DG+LP+NEGRGY
Sbjct: 244 YEIDSFQYLIKAIAQL------GQNIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F 
Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL   + +L K + L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FN
Sbjct: 358 RTLEQGLRLLQDHIKNL-KGQELSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++QR +++A S      TT+  + ++ +    ++F GY+                  
Sbjct: 416 QLMQQQREQSQAAS----QFTTD--YHAVSQLDHQSEFHGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG   
Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKNC 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+ D QK  + + VH+  V +G L  ++S+   +D+  R  + +NH+ATHLLH AL  
Sbjct: 507 SFQVDDTQKVGQAV-VHYGEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+G HV Q GS +  +  RFD +H + +   +++ IE+ VN  I  N  V+T++M+ E A
Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEALNPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +G
Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--- 776
           IRRIE +TG+ A + +  Q   + +LA+ LK +  ++  ++ ++  + +  + + AK   
Sbjct: 681 IRRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKISQLLLDNKNQEKMIAKLLS 740

Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I ++ 
Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799

Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           K +V+  V+++++ +  +A  L R        G GGGR  MAQ GG
Sbjct: 800 KMNVIAGVSKNIIGKTPSAAQLVRHLC-----GKGGGRDDMAQGGG 840


>gi|220934463|ref|YP_002513362.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995773|gb|ACL72375.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 865

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/900 (43%), Positives = 553/900 (61%), Gaps = 47/900 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +RT+FLE+F+  GHE++PSS LIP NDPTL+FTN+GMV FK++F G+E+  Y   T+ 
Sbjct: 4   ADLRTSFLEYFRSKGHEVVPSSPLIPGNDPTLLFTNAGMVQFKDVFLGREQRPYVRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L + +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEYLTQVLKLPEEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV++ED+EA  +W K  G++ ++  RI  +DNFWSM +TGPCGPC+EIF+D G  +P
Sbjct: 124 LWVTVFEEDDEAADIWLKDVGVNPERFSRIGASDNFWSMGDTGPCGPCTEIFYDHGPEVP 183

Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PG+ E +G+RYIEIWNLVFMQ+++        LP+ S+DTGMGLER+A V+Q   +N
Sbjct: 184 GGPPGTPEADGDRYIEIWNLVFMQYDRAKDGTLTPLPRPSVDTGMGLERLAAVMQGVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF++LI+A   +   K       + RVI DH+RS SFL+ADG++PANEGRGYVLRR
Sbjct: 244 YEIDLFQNLIRAIRDMA--KGADPTSPSLRVIADHIRSCSFLVADGVMPANEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA  +   LG  EP    L+  L  EMG AYPEL++A+ ++E  LR E+ERF +TL+
Sbjct: 302 IIRRAARHGHKLGLDEPFFHRLVGPLVAEMGEAYPELVKAQPMVERVLRQEEERFAETLE 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +GL +L+  +  L   EI  G   F LYDT+G P+D+  DI   RGL  +D+  F   +E
Sbjct: 362 KGLRILEEDIDGLKGTEI-PGKTIFVLYDTYGFPVDLTGDIARERGLT-LDMAGFEAEME 419

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR RARA S        +  +    +  G + F GY+ L G                  
Sbjct: 420 IQRERARAAS------HFDADYHRKLKIEGESAFTGYEHLDG------------------ 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   V A+ + GE V+   SG+   VV D+TPFYAE+GGQ+GDTG  + +G+  ++
Sbjct: 456 -----QGRVTALFKDGEPVDALASGEHGLVVLDETPFYAESGGQVGDTGELLAEGVIFEV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TD +K       H   V  G +     L   ++   R+ + +NHSATHL+H AL  ILG 
Sbjct: 511 TDTRKHG-AAHAHMGRVVEGRIAQGDVLGAKVNQARRQAVVLNHSATHLMHAALREILGD 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS + PD LRFD +H +P+++ EL+ IE  VN+ I  N     RIM  + A+ SG
Sbjct: 570 HVQQKGSLVAPDRLRFDFSHFQPVSAEELERIERRVNEAIRANAEAEARIMPIDQALESG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRV+S+     G  S+ LCGGTHV  TG+I +  I+SES + +GIRRI
Sbjct: 630 AMALFGEKYGDEVRVLSM-----GGFSTELCGGTHVRRTGDIGVFKILSESGVASGIRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781
           EA+TG+ A +++   ++ L  +A  +K  +G++  +V  + E  R+L  +L   K KL  
Sbjct: 685 EAVTGENALNYIGETEKNLSRIAEMVKAGRGDLDEKVALLVERSRQLEKELEALKGKLAS 744

Query: 782 NVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                   +  +VN    ++  +   D K L+  +D L+ K+    ++L  + K+ K S+
Sbjct: 745 AAGSSLADQAVEVNGIKVLAANLEGADPKSLRDTVDQLKNKLGEAAVVLATV-KDGKVSL 803

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT+    R  A +L    A+ + GG GGGRP MA +GG + +    A+A V  ++++
Sbjct: 804 VAGVTQGQTARLKAGELVNAVAQQV-GGKGGGRPDMAMAGGTDPSGLPGALASVPDWVRE 862


>gi|320323208|gb|EFW79296.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329761|gb|EFW85750.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 874

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  +   VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLAAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|134302304|ref|YP_001122273.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|205830098|sp|A4IZ01|SYA_FRATW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134050081|gb|ABO47152.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 865

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|118497373|ref|YP_898423.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|195536062|ref|ZP_03079069.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|205830097|sp|A0Q604|SYA_FRATN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118423279|gb|ABK89669.1| alanyl-tRNA synthetase [Francisella novicida U112]
 gi|194372539|gb|EDX27250.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 865

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/901 (42%), Positives = 538/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L+  +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  +     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|254427911|ref|ZP_05041618.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196194080|gb|EDX89039.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 866

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/887 (43%), Positives = 544/887 (61%), Gaps = 51/887 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL++F   GH  +PSSSL+P NDPTL+FTN+GM  FK++F G+E   Y   T+ 
Sbjct: 4   AELRQAFLDYFASQGHTKVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGRESRDYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L + R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLPEDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G  +P
Sbjct: 124 LWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGAHVP 182

Query: 185 GGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS  E+ +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ   +N
Sbjct: 183 GGPPGSEGEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGVHSN 242

Query: 244 YDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           Y+IDLF+ L+QA+ + TG +  E  ++   RVI DH+RS+SFLI DG++P+NEGRGYVLR
Sbjct: 243 YEIDLFQALLQAASKATGCQDLEEKSL---RVIADHIRSASFLICDGVIPSNEGRGYVLR 299

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +   LG  +P    ++ AL  +MG AYPEL + +  IE+ L +E+E+FG+TL
Sbjct: 300 RIIRRALRHGHKLGQDKPFFSTMVSALVEQMGEAYPELGREQARIEKALLAEEEQFGRTL 359

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
             G+ +L+  +  L   ++L G+V F LYDTHG P D+  D+   R L  +D+  F  A+
Sbjct: 360 AAGMKVLESAIEQL-DGKVLPGEVLFNLYDTHGFPPDLTADVARERALT-VDMDGFETAM 417

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             QR RAR      G+G+    +         T F GY+     K   +D          
Sbjct: 418 AAQRERAR------GAGSFANDYSDRLNIDAVTDFSGYE-----KLADDD---------- 456

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---I 539
                    V A+ + G+ VE   +G++  VV  +TPFYAE+GGQ+GDTG  +G      
Sbjct: 457 --------AVVALYKDGDAVETLNAGEEGMVVLARTPFYAESGGQVGDTGALMGGDDSET 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD +K+ +   VH   +E G L     +   +D   RR +  NHSATHL+H AL  
Sbjct: 509 RFLVTDTRKR-QAAHVHVGKLESGTLTVGSKVSAYVDVDRRRAVMRNHSATHLMHAALRD 567

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ + A
Sbjct: 568 VLGEHVQQKGSLVAADYLRFDFSHGEAVSEAQREQIEILVNRQILANTAVTTELMDIDAA 627

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL G KY+D+VRV+S+   DG   S  LCGGTHV+ TG+I L  I  E+S  AG
Sbjct: 628 REAGAMALFGEKYDDQVRVLSMG-SDG--FSKELCGGTHVNRTGDIGLFRITLEASAAAG 684

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           +RRIEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L  ++   K+
Sbjct: 685 VRRIEAVTGEHALAVMRQQERALSEIAATVKSSPDNAADRVRSQAQKVRELEKEIERLKQ 744

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           KL          ++ DVN +  + +++   DSK L+  MD L+ K+ S +I+L  +  +K
Sbjct: 745 KLASGAGGDLTSEVQDVNGVKVLATQIDGADSKTLRVTMDKLKDKLGSAVILLAAVEGDK 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            A ++  VT+DL  R+ A DL +  A+ +  G GGGRP MAQ GG N
Sbjct: 805 VA-LVAGVTKDLTARYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNN 849


>gi|328676860|gb|AEB27730.1| Alanyl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 865

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQFKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKLIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  +     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|308048574|ref|YP_003912140.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307630764|gb|ADN75066.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/895 (42%), Positives = 541/895 (60%), Gaps = 59/895 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IRT FLE+F+  GHE++ SSSL+P NDPTL+FTN+GM  FK+ F G E+  Y   TT
Sbjct: 5   TAEIRTAFLEYFRSQGHEVVASSSLVPHNDPTLLFTNAGMNQFKDCFLGAEQRAYTRATT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L + 
Sbjct: 65  AQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKFAWQFLTEVLQLPKD 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSEI 175
           +L +TVY  D+EAF +W K  G++A+ IIRI         T+DNFW M +TGPCGPC+EI
Sbjct: 125 KLCVTVYHTDDEAFDIWNKEIGIAAENIIRIGDKPGKPAYTSDNFWQMGDTGPCGPCTEI 184

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG+ EE G+R+IEIWN+VFMQF +        LPK S+DTGMG+ER+A
Sbjct: 185 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQFNRHADGTMDPLPKPSVDTGMGIERVA 244

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NYDID+F+ LI+ + ++TG     N  +  RV+ DH+RS ++LI DG++P+N
Sbjct: 245 AIMQGGHSNYDIDIFQRLIKKAAEITGTTDLDNKSL--RVVADHIRSCAYLIVDGVMPSN 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ + R LG  +     L+  L   MG+A  EL Q + ++E+ LR E
Sbjct: 303 EGRGYVLRRIIRRAVRHGRKLGANDTFFFKLVGELADVMGAAGEELKQQQAIVEKVLRIE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F +TL+RG+ LL+  L +L  D +L+G   FKLYDT+G P D+  D+   RG + ID
Sbjct: 363 EEGFARTLERGMQLLNEALDNLDGD-VLDGATVFKLYDTYGFPADLTNDVARERGFS-ID 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +E+QR RAR        GT      S+      + F GY              
Sbjct: 421 EDGFEVEMEQQRQRARDAGQ---FGTDYSKVVSIDSD---SVFTGY-------------- 460

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVVFDQTPFYAEAGGQLGDT 531
                   D T+    +V  +V+  E+  +++ G++     +V DQ+PFYAE+GGQ+GDT
Sbjct: 461 --------DRTDDQGKVVAILVEGNEV--DSLMGERGTDAVLVLDQSPFYAESGGQVGDT 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++TD QK    I  H   +  G  +   ++   +D   R  + +NHSATH
Sbjct: 511 GVIRCGDAEFEVTDTQKLGNAI-AHKGKLVSGAFQRGDAVAAEVDASRRDAIRLNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  D LRFD +H + ++  EL +IE+ VN+ I  N  + T
Sbjct: 570 LLHAALRNLLGDHVTQKGSLVMADRLRFDFSHFEGVSRDELVAIENQVNEQIRANHSIDT 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY+D+VRV+++     G +S  LCGG H   TG+I    IV
Sbjct: 630 ELMDIEAAKARGAMALFGEKYDDQVRVLAM-----GDYSIELCGGIHAKRTGDIGFFKIV 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           SE  I AGIRRIEA+TG  A +    Q+ +L   A+ +K    +V  +V+ + ++ R+L 
Sbjct: 685 SEGGIAAGIRRIEAVTGNGAVAFARSQENQLLETAALVKGDAQSVASKVKGLLDKNRQLE 744

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
            +L   K+KL             D+  +  +IS++   DSK L+ ++D L+ ++ SGI++
Sbjct: 745 KELEQLKQKLASAASANLVDSAVDMGGVKVLISQLENADSKALRGMVDDLKNQMGSGIVL 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L  ++ + K  ++  VT+DL  +  A +L  L A+ + GG GGGRP MA +GG +
Sbjct: 805 LGNVA-DGKVGLIAGVTKDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAMAGGTD 857


>gi|88658226|ref|YP_507768.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123492839|sp|Q2GFL5|SYA_EHRCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88599683|gb|ABD45152.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 887

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/896 (42%), Positives = 546/896 (60%), Gaps = 57/896 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS++R +F++FF KNGH++ PSS LI  +DP+L+FTN+GMV FK +FT          T+
Sbjct: 7   VSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANVNTATS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE  L + 
Sbjct: 67  SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKELSLSKD 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY TVY +D+EAF LWKKISG+S  +II+ITT+DNFWSM  TGPCGPCSEIF+D G+ +
Sbjct: 127 RLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYDYGDNV 186

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ EE G R+ EIWNLVFMQ++++   E  +LPK  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI LFK LI AS++ +G      N + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDISLFKALIAASKEQSG---NSTNELAHRVIADHVRSAAFLIAEGLTPGNEGRNYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPAL-----CTEMGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L Y + LM  + P L     C  M   YPELI AK LI   L+ E+E 
Sbjct: 304 RIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILKIEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L +L   +IL+GD+ FKLYDT+G P+DI  DI+  +G+   D   
Sbjct: 364 FKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK-FDEQG 422

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   + +Q+ R++  HS+       E+ W  +KE+ G+T+F+GY+        + D K  
Sbjct: 423 FYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKFVGYE--------RYDTK-- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533
                       ++++  +    + VE A  G KV ++ D TPFYAE+GGQ GD G    
Sbjct: 473 ------------ATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGDVGIFNV 520

Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
                      D I  ++ D +K  + +++H  I+++G L     +   ID + RR L  
Sbjct: 521 IVRQEKELFANDNIA-EVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERRRNLCA 579

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH+ L + + S + Q GS ++ + LRFD ++   +T  +L  IED +  +I+ 
Sbjct: 580 NHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMYSLISG 639

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N PV++ + + +DA+A GA AL   KY +  VRVVS++       S  LC GTHV  T E
Sbjct: 640 NNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIK------DSKELCCGTHVKYTSE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    IVSE+SI  GIRRIEA+TG+ A  +   Q++ L S+A  +KV   NV+ +++++ 
Sbjct: 694 IGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQIDKLD 753

Query: 765 EEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++ ++L+   +     + N++ ++  KI +V+F+   +S +    ++  ++   K + + 
Sbjct: 754 KKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---KHLTAD 810

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            I+L      +    ++ V   L  +  AVD  ++   ++    GGG   +AQ  G
Sbjct: 811 RIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMV-KSKGGGNAQLAQING 865


>gi|171464036|ref|YP_001798149.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193574|gb|ACB44535.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 874

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/911 (43%), Positives = 542/911 (59%), Gaps = 60/911 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS IR  +L+FF + GH+++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   VSQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F L + 
Sbjct: 63  TQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQIFKLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L +TVY ED+EAF++W K  G+ A++IIRI  N       DNFW M +TGPCGPCSEIF
Sbjct: 123 KLLVTVYAEDDEAFEIWNKQIGVPANRIIRIGDNKGARYASDNFWMMGDTGPCGPCSEIF 182

Query: 177 FDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G+ IPGG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+A 
Sbjct: 183 YDHGDHIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERIAA 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           VLQ   +NY+IDLF +L++AS++     G +       + +VI DH+R  SF++ DG++P
Sbjct: 243 VLQHVHSNYEIDLFVNLLKASKEAVDAAGGENCDPESPSLKVIADHIRVCSFIVVDGVIP 302

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            N GRGYVLRRI RRA+ +   LG  +P    L+PAL  EM  AYPEL  A+  + E ++
Sbjct: 303 GNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMSDAYPELRAAQDKVSEVIK 362

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF +T+  G+ +LDG L+  G  ++++G+ AF+L+DT G PLD+  D+   RG+  
Sbjct: 363 QEEERFFQTIANGMEILDGALA--GDAKVVDGETAFRLHDTFGFPLDLTTDVCRERGVT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR--GSKFMK 470
           +D   F+  +++QR +ARA           K+   L  K   TQF GYD L+  G+K   
Sbjct: 420 VDADGFDVVMQKQRDQARA-------AGKFKVAQGLDYKGRPTQFYGYDTLKHEGAK--- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+   G  V    +G    +V D TPFYAE+GGQ+GD
Sbjct: 470 ---------------------VTALYVDGSAVPCVKAGDVAVIVLDNTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    + IR  +    K    +F H   V  G L+    L   +D + R     NHSAT
Sbjct: 509 KGELRNESIRFAVEGTFKIQADVFGHQGEVLEGELKVGDVLNAIVDTRQRTDTMRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +     RFD TH+ PIT  ++  IED VN  I +N    
Sbjct: 569 HILHRALREVLGDHVQQKGSLVDAAKTRFDFTHNAPITVEQIHRIEDIVNREILENTATS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M+ +DA  +GA  L G KY D VRV+ +        S  LC GTHVS TG+I  L I
Sbjct: 629 GKVMSLDDAQKTGAMMLFGEKYGDEVRVLEIG------SSKELCCGTHVSRTGDIGSLKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  + AGIRR+EA+TG  A   L G ++K+   A+ LK   G++V RV ++ +  R+ 
Sbjct: 683 VSEGGVAAGIRRVEAVTGNNALHFLQGLEDKVNEAAAILKTHPGDLVNRVAQLQDSLRQA 742

Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +L     KL  +  D    +  DVN    ++  I+  D+  L+  MDAL+ K+++  I
Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGIKVLAARINSADASVLRKTMDALKAKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  VT D + +  A DL    A+ + GG GGG+P MA +GG + +K 
Sbjct: 803 VLASVQGD-KVSLIAGVTTDSIGKIKAGDLVNFVAQQV-GGKGGGKPEMAMAGGTDPSKL 860

Query: 886 DQAIAGVASFL 896
             A+ GV  ++
Sbjct: 861 GVALDGVKDWV 871


>gi|289650414|ref|ZP_06481757.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 874

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQLLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|330881471|gb|EGH15620.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 874

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTPVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  +   VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLAAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|167628656|ref|YP_001679155.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|205830065|sp|B0TFY7|SYA_HELMI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167591396|gb|ABZ83144.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 883

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/904 (42%), Positives = 555/904 (61%), Gaps = 45/904 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FLE+F++ GH ++ SSSL+P NDPTL+F+N+GM  FK++F G EK  Y   TT QK
Sbjct: 8   VRQLFLEYFEQKGHTIVASSSLVPHNDPTLLFSNAGMNQFKDVFLGFEKRPYLRATTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L + +LY
Sbjct: 68  CVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRYAWEFLTDVCGLPKDKLY 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183
            TVY +D+EAF LW+ + GL   +I+R+   DNFW+M +TGPCGPCSEI  D+GE   C 
Sbjct: 128 ATVYLDDDEAFALWRDMIGLPEARILRLGEKDNFWAMGDTGPCGPCSEILIDRGEHLRCK 187

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    + +R++EIWNLVFMQ+ +        LP+ SIDTGMGLER+ +VLQ+  +N
Sbjct: 188 AEECAIGKCDCDRWLEIWNLVFMQYNRDENGTMTPLPRPSIDTGMGLERVTSVLQKVGSN 247

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           YD DL + LI   EQ+ G  Y  ++     RVI DH+RS +FLI DG+LP+NEGRGYVLR
Sbjct: 248 YDTDLLRPLIAFVEQLCGQVYHRDDRGFPFRVIADHIRSCTFLITDGVLPSNEGRGYVLR 307

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ + ++LG  +P M  ++P +   MG AYP++ + +  + + ++ E+ERF +TL
Sbjct: 308 RILRRAVRFGKVLGIDKPFMYEIVPVVVELMGEAYPDIREKQDFVCKVIKIEEERFHETL 367

Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
             G+ +   +++ + ++   +L G  AF LYDT+G PLD+ +DI    GL  +D   F Q
Sbjct: 368 HDGMRIAADMVAKVKQEGGNVLPGKQAFTLYDTYGFPLDLAEDIAEENGLT-VDKDGFQQ 426

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR RARA       G   ++W  L ++ G T F GY    G               
Sbjct: 427 AMEAQRERARAARQDTAYGAGMELWAELLQQLGPTVFTGYGRTSG--------------- 471

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGI 539
                    S+VKAIV     V EA +G  V+VV  +TPFYAE+GGQ+GD+G    GD +
Sbjct: 472 --------ESVVKAIVAGATRVTEAGAGTAVQVVLAETPFYAESGGQIGDSGLLRAGDAV 523

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ D +K A G+ VH  +V  G+ +    +V  ++   R  ++ +HSATHL+H AL  
Sbjct: 524 -VRVEDTKKMAGGLHVHFGVVAEGVFKEGDQVVAEVESARRLAIARHHSATHLMHKALKE 582

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +TPD LRFD +H  P+T  E   IE  VN  + Q LPV     + ++A
Sbjct: 583 VLGEHVNQAGSLVTPDRLRFDFSHFSPLTRDEWNRIEAAVNRAVFQALPVEVFETSIDEA 642

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA AL G KY DRVRVV +     G +S  LCGGTH+ +T ++ L  ++SES I AG
Sbjct: 643 KAMGATALFGEKYGDRVRVVRM-----GNYSMELCGGTHLDNTSQVGLCKLLSESGIGAG 697

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLIH 774
           +RRIEA+TG+ A ++L  Q+E ++ LA  LKV    V  RV+ +  + R+      QL+ 
Sbjct: 698 LRRIEAVTGEAALAYLNEQEETVRMLAEKLKVPAAEVTNRVDSLQAQLREKEREMEQLLS 757

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              K Q++       +I  V  ++  +   D   L+S+ D L++K+ SG+++L  ++ + 
Sbjct: 758 RLAKYQIDDLLAGKEEINGVTVLAAKVQAPDMDALRSMSDLLKEKLGSGVLILGAVAGD- 816

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +++   T+D++ R  +A +L + +AKV  GGGGGGRP MAQ+GG + ++   A+    
Sbjct: 817 KVNLVAAATKDIVGRGVHAGNLVKEAAKVC-GGGGGGRPDMAQAGGKDPSRLSDALEAAK 875

Query: 894 SFLK 897
             LK
Sbjct: 876 KLLK 879


>gi|224457282|ref|ZP_03665755.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370663|ref|ZP_04986668.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874986|ref|ZP_05247696.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151568906|gb|EDN34560.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840985|gb|EET19421.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 865

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ ++++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|58616869|ref|YP_196068.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|75356993|sp|Q5FH56|SYA_EHRRG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58416481|emb|CAI27594.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 887

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/892 (42%), Positives = 537/892 (60%), Gaps = 55/892 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS +R  F++FF KNGH+  PSS LI  +DP+L+FTN+GMV FK IFT  +        +
Sbjct: 7   VSDLRRLFIDFFVKNGHQFFPSSPLIIKDDPSLLFTNAGMVQFKQIFTSVDGRSINTAVS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW+ + KE  LD++
Sbjct: 67  SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKEHAIELAWNFVIKELALDRK 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D++AF LWKKIS  S DKII+I TNDNFWSM   GPCGPCSEIF+D GE +
Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ EE G R+ EIWNLVFM++ +  + E  +LP+  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTKEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI  S++ +G     +  + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDINLFKALIAMSKKESG---NSSCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L YT+ LM  + P L  E     M   YPEL++AK +I   L++E+E 
Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELLKAKDMIISILKTEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L++L   ++L+GDV F+LYDT+G P+DI  DI+  RG+   D   
Sbjct: 364 FKDTLVRALPLLEKELTYLSAGDVLSGDVIFRLYDTYGFPVDITLDIIKERGIR-FDEKG 422

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +E+Q++R+R +H +        KIW  +++ Y  T+F+GYD  +            
Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQVQ---------- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533
                       S I+  ++     V  A  G KV ++ D TPFYAEAGGQ  DTG    
Sbjct: 473 ------------SKILSMVMNNDRNVTVANVGDKVSILMDVTPFYAEAGGQQADTGLLSV 520

Query: 534 -------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
                    G      +T+ +   +G+++H  I++ G L     +   I+   R+ L  N
Sbjct: 521 VRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIIKSGSLIIGDIVSAEINSHRRKDLCAN 580

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH+ L   + +++ Q GS +  D LRFD +++  +T  ++K IE+ + D+I QN
Sbjct: 581 HSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQN 640

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            PV T I N +DA+ +GA AL   KY N  VRVV++       +S  LC GTHV  TGEI
Sbjct: 641 HPVETNICNLQDAMDNGAIALFTEKYDNHEVRVVNIG------NSKELCCGTHVKYTGEI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SESSI  GIRRIEA+TGQ A  +   Q++ L  +A  +K    +V+ ++++I  
Sbjct: 695 GCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKINR 754

Query: 766 EYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           E ++L Q + A     ++++ ++  KI ++NF+   +S V    +  V   + K++   +
Sbjct: 755 ENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSGV---PIDVVRKFIMKRLVKDM 811

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           IML           ++ V   L  +  A D  ++   V+   GGG    +AQ
Sbjct: 812 IMLFSNVVNHNRIYVVGVGNSLHSKVKAADFVKIINCVVKSKGGGN-AQLAQ 862


>gi|330811260|ref|YP_004355722.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379368|gb|AEA70718.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 873

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/911 (43%), Positives = 543/911 (59%), Gaps = 60/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS Q  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLSASAQAIGCT--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGNVVPGDVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         AT+F GY             
Sbjct: 420 EEGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATEFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G + IV AI + G+ V+    GQ+  +V D+TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------AGTTGSAKIV-AIYKDGQSVDILSEGQEGVIVLDKTPFYAESGGQIGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH ++  G L     +   +D   R   S+NHSATHLL
Sbjct: 510 LQAGSSRFDVRDTTKTG-GAFLHHGVLASGSLMIAAPVAAHVDADVRHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +LK++E+ VN  I +N PV T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEEIVNAEIRKNSPVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A   GA AL G KY D VRV+S+     G  S  LCGG H + TG+I L+ I+SE
Sbjct: 629 TDIETAKRKGAMALFGEKYGDSVRVLSM-----GDFSVELCGGIHANRTGDIGLMKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + +G+RRIEA+TG  A ++L   +E+LK  A+ +K S+ N++ ++  + E  R    +
Sbjct: 684 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLIKGSRDNLIDKLSAVLERNRLLEKQ 743

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 744 LEQLQAKAASAAG-DDLSAQAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVILL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E+K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 803 -GSVHEEKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGTDVGALDA 860

Query: 888 AIAGVASFLKK 898
           A+A   +F+++
Sbjct: 861 ALAQTVAFVEQ 871


>gi|89256431|ref|YP_513793.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314869|ref|YP_763592.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502533|ref|YP_001428598.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010686|ref|ZP_02275617.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367771|ref|ZP_04983792.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|122325116|sp|Q0BLS9|SYA_FRATO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122500687|sp|Q2A3A9|SYA_FRATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830095|sp|A7NCD9|SYA_FRATF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89144262|emb|CAJ79545.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129768|gb|ABI82955.1| alanine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253582|gb|EBA52676.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253136|gb|ABU61642.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 865

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLL+ AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|331012342|gb|EGH92398.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 874

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+   I   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGGIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +DLS     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|291279844|ref|YP_003496679.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754546|dbj|BAI80923.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 871

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/900 (41%), Positives = 546/900 (60%), Gaps = 44/900 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL++F+  GH  +PSSSL+P NDPTL+FTN+GM  FK++F G+EK  Y    + QK
Sbjct: 6   IREKFLKYFESKGHTRVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGREKRDYTRACSCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE +L   +LY
Sbjct: 66  VVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKEINLPADKLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY +D+EAF++W K  G+ AD+I R+   DNFW+M +TGPCGPCSEI  DQG  I  G
Sbjct: 126 ITVYKDDDEAFEIWNKHIGVPADRIYRMDEKDNFWAMGDTGPCGPCSEILIDQGPEIGCG 185

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   + +R++E+WNLVFMQ+ +    +   LPK SIDTGMGLER+  V+Q+  +N+
Sbjct: 186 RADCDPYCDCDRHLELWNLVFMQYNRDESGKLNPLPKPSIDTGMGLERVTAVVQKVPSNF 245

Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D DL K +I+ + +++   Y  N  +  + RVI DH R+++FLI+DG+LP+NEGRGYVLR
Sbjct: 246 DTDLIKPIIEYAAKLSNKNYGDNEKDDTSLRVIADHARATTFLISDGVLPSNEGRGYVLR 305

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RIMRRAM + ++LG+ E     +   +C  M   Y EL+  K  + + ++ E+ERF KTL
Sbjct: 306 RIMRRAMRHGKMLGFKESFFYQVCEFVCDFMNDPYIELMDKKSYVSKVVKFEEERFNKTL 365

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           + GL + + +L    +++ + G   F+LYDT+G P+D++QDI+   G   +D++ F++ +
Sbjct: 366 ETGLKIAEELLEKYKENKEIPGFEIFRLYDTYGFPVDLLQDIMEDNGYK-LDLVGFDEEM 424

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           ++Q+ RA+    G G      I+  L+ ++  T+FIGY+  +                  
Sbjct: 425 KKQQERAKNAWAGSGESFIADIYKKLENQF-KTEFIGYENTKS----------------- 466

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  S V AIV+     +E     + E++ D+TPFY E+GGQ+GDTG    +   ++
Sbjct: 467 ------ESSVLAIVKDDNETQEISESSEFELILDKTPFYPESGGQVGDTGKIYNENCNIE 520

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D  KK   + VH + +  G ++    +   ID + R+    NH+ATHLLH AL  +LG
Sbjct: 521 VLDC-KKVGNLIVHKSKLLSGKIKKGDKVTAVIDVEKRKNTERNHTATHLLHKALQMVLG 579

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS + PD LRFD TH  P+   E+K IE  VN+ I +N+ V   I   E+AI  
Sbjct: 580 DHVRQAGSLVAPDRLRFDFTHFAPVDDEEIKKIELLVNENIIKNIEVTKTIKPIEEAIKE 639

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY+  VRVV V        S  LCGG HV  TG+I +  IVSE+S+ AGIRR
Sbjct: 640 GAMALFGEKYDKEVRVVEVP-----GFSKELCGGCHVGRTGDIGIFKIVSEASVAAGIRR 694

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+TG  A       +   K  A  LK +  +V  ++ E+ E+ +  Q    K + +LN
Sbjct: 695 IEAVTGLEAVKFTQEINSIAKKSALLLKSNINDVPSKITELQEQLKNTQKELTKLQDKLN 754

Query: 783 ---VEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKA 836
               ED+  + + ++N +  +   +D+ E   L++ +D  + KI+SGI+ LVG     K 
Sbjct: 755 ASKAEDILSN-VKEINGIKVLAIRMDNTEINALRNFVDMAKAKIKSGIV-LVGSVNGDKV 812

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + L  VT+DL  ++ A D+ +  AK+  GGGGGG+P +AQ+GG N  K D+A+  + + L
Sbjct: 813 TFLCGVTKDLTSKYKAGDIVKEIAKIT-GGGGGGKPELAQAGGKNPEKIDEALNHIYNIL 871


>gi|317050904|ref|YP_004112020.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316945988|gb|ADU65464.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 893

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/901 (41%), Positives = 542/901 (60%), Gaps = 45/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   +R  FL +F+  GH+++ SS LIP +DPTL+FTN+GM  FKNIF G EK  Y    
Sbjct: 12  NAQQVRQQFLSYFESKGHKVVASSGLIPFDDPTLLFTNAGMNQFKNIFLGNEKRDYNRAA 71

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ +T+   LD+
Sbjct: 72  TAQKCVRAGGKHNDLENVGVTARHHTFFEMLGNFSFGDYFKREAIEYAWEFITEVMKLDR 131

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            RL+++V+ ED+EA  +W+   G+ A++I+R    DNFW M ETGPCGPCSEI +DQG  
Sbjct: 132 SRLWVSVFREDDEALAIWRDHIGVPAERILRCGEKDNFWQMGETGPCGPCSEIHYDQGPD 191

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             C  GG  G   E +RY+EIWNLVFMQ+++Q       LPK SIDTGMGLER+A V+Q 
Sbjct: 192 VPCTEGGPCGVECECDRYLEIWNLVFMQYDRQPDGTLVPLPKPSIDTGMGLERLAAVVQG 251

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +T+NY  DLF  L+       GM Y     +  V+ RVI DHLR+S+FLI+DG +P+NEG
Sbjct: 252 ETSNYHTDLFLPLLNRIAADCGMTYTRSASHQDVSMRVIADHLRASTFLISDGAIPSNEG 311

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM +A  LG  EP M  L+  +    G A+PE+++ + ++EE +  E+ 
Sbjct: 312 RGYVLRRIMRRAMRHANQLGKKEPYMYSLVCLMEEHYGEAFPEIVKNRAMVEEIIYQEER 371

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TLD GL +L+ +++ L K     L+G  AFKLYDT+G PLD+  DIL  RG+  +D
Sbjct: 372 RFANTLDHGLAILEEMVAGLQKSAQVALDGQSAFKLYDTYGFPLDLTVDILEDRGIT-VD 430

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+EEQ+ RARA    + S T+ +    L E     +F GYD L           
Sbjct: 431 EAGFYAAMEEQKVRARASWKAVASVTSSED-LRLIESRHQQEFSGYDFLSAK-------- 481

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +S++  +  Q   + +  +G++  ++ D+TPFYAE+GGQ+ DTG  
Sbjct: 482 --------------ASVIGLLDLQENSLSQVRAGEEAWLLLDKTPFYAESGGQVADTGVV 527

Query: 535 IGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             DG  + ++  V+K   G+ +H  +V +G      ++  T++ + RR +++NHSATHLL
Sbjct: 528 ATDGGDIFEVRSVRKSIGGLHLHRGVVSQGRFSAGDAVTATVNSRRRRNITLNHSATHLL 587

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL + +G HV Q GS +    LRFD TH K +T  EL+ +ED VN  +  N  V   +
Sbjct: 588 HAALKSTVGEHVRQAGSLVEDGKLRFDFTHWKGLTPEELQGVEDQVNAQVMANHAVRKEL 647

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+A GA AL   KY D VRV+++     G +S  LCGGTHV +TG+I L  I+SE
Sbjct: 648 MTLDDAVARGATALFDEKYGDDVRVITM-----GDYSMELCGGTHVDATGQIGLFKILSE 702

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+I AG+RRIEA TG  A   +    + +   A  LK     +  ++E++ E  R+L+  
Sbjct: 703 SAIAAGVRRIEATTGPGALQVVRDLQKTVGDAARMLKTRPEELCAKIEKLLEGNRQLEKQ 762

Query: 774 HAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828
             + + +++  + S    ++ +V+ +  ++   + K   ELK ++D+ + ++   ++ L 
Sbjct: 763 QRELQEKMSARETSTLQEQVEEVSGVKVLLQSFEGKSVEELKQIVDSAKHQLGEVVVALA 822

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K   ++ V+E L  R  A DL ++ A    GGGGGG+P  AQ+GG    K  +A
Sbjct: 823 SVV-DGKVLFVVGVSEALSQRVRAGDLVKILATTC-GGGGGGKPTFAQAGGREPGKIAEA 880

Query: 889 I 889
           +
Sbjct: 881 L 881


>gi|187931901|ref|YP_001891886.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|205830096|sp|B2SH99|SYA_FRATM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187712810|gb|ACD31107.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 865

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E++ F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEKLFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q  ++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDDQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  D LRFD TH K I+ +E++ IE  VN  I  N PV T  ++++ A
Sbjct: 567 VLGGHAEQKGSLVDEDRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIEISQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDINLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|298488157|ref|ZP_07006194.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157436|gb|EFH98519.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 874

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A S G+   +  K+         ATQF GY             
Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T G +S+V ++ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------SATTGSASVV-SLYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSATHLL
Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNAEIRKNTEVMTEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  IVSE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769
             + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R    +
Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744

Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L+ + AK       +D+S     +  V  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 745 LEQLQAKAASAAG-DDMSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +    D 
Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861

Query: 888 AIAGVASFLKK 898
           A+A    F+++
Sbjct: 862 ALALAVPFVEQ 872


>gi|241668454|ref|ZP_04756032.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876987|ref|ZP_05249697.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843008|gb|EET21422.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 865

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/900 (42%), Positives = 541/900 (60%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W    GL  ++IIRI +NDNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLER+A VLQ+
Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI+ +++VT    +  N  + +V+ DH+RS +FLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNA--DDINSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T++ G+ + D  ++ L  D I +G++AF+LYDT+G PLD+  D+   +GL  +D  +F 
Sbjct: 359 RTIENGIKIFDTEIASLKCDTI-SGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + + +Q+ R++       +G     + S+      + F GY  L       ED KVL   
Sbjct: 417 EQMLKQKQRSKE------AGKFNVDYNSIINSQAKSNFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G+ V    +     +V D+TPFYAE+GGQ+GD G   G G+
Sbjct: 462 --------------EIYQDGQPVNTIQAESTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +GIL T   +   ++   R   + NHSATHLLH AL  
Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKALKI 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSH  Q GS +  + LRFD TH K I+  E++ IE  VN  I  N PV T   ++E A
Sbjct: 567 VLGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  IVSES I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEAIT  +A  +    + KL ++    K +  N++ +++ + E  +  +   AK K 
Sbjct: 682 IRRIEAITADKAIKYTFAIENKLAAIKEITKSNDSNLLDKLQSMLEHLKNQEKEIAKLKK 741

Query: 780 QLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            +     S  K + ++ +  II+    VD K L+  +D  + K    + +L  I+ + K 
Sbjct: 742 DILSGANSNIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVLSTINAD-KV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V++ +     A D+A+  +  +  G GGGRP MAQ GG N    D+A++ +  ++
Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLEKYI 859


>gi|170722926|ref|YP_001750614.1| alanyl-tRNA synthetase [Pseudomonas putida W619]
 gi|169760929|gb|ACA74245.1| alanyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 897

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 27  AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 86

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +L +
Sbjct: 87  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 146

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 147 EKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 206

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 207 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 266

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            V+Q   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 267 AVMQHVHSNYEIDLFQNLLSAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 324

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 325 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 384

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 385 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 442

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT F+GY+   G        
Sbjct: 443 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDTATDFVGYNATEG-------- 487

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDTG 
Sbjct: 488 ---------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGY 532

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 533 LQSGAVRFDVQDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 591

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +T A++K++ED VN  + +N PV T I
Sbjct: 592 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVETEI 651

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 652 TDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 707

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 708 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLEKQ 767

Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 768 LEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 826

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 827 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 876


>gi|209694226|ref|YP_002262154.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208008177|emb|CAQ78320.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 860

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/907 (42%), Positives = 542/907 (59%), Gaps = 68/907 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 DRLLVTIYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRLADGTMEPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQTLIKETAKVVG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E FG+TL+RG+V+L+  L +L +  +L+G+  FKLYDT+G P D+  D+   R L  ID
Sbjct: 362 EENFGRTLERGMVILNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F +A+ EQR RAR A   G       K+          T F GYD       + E  
Sbjct: 420 EDGFEKAMNEQRQRAREAGQFGTDYNAVIKV-------ESETVFHGYDFTEAKATVLE-- 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
            + C                    +GE VE   +G    ++ D TPFYAE+GGQ GD G 
Sbjct: 471 -IFC--------------------EGEAVETLSAGDDAILILDVTPFYAESGGQSGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD QK    I  H  +VE G+L T    +  +D + R  +++NHSATHLL
Sbjct: 510 ITVEAGKFVVTDTQKVGNAIGHHGKLVE-GVLSTADRAMAQVDEERRTAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD ++ + +   EL+ +E  VN  +  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAESLRFDFSNLEGVKPEELRLVERIVNQQVRLNHAIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDVDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             I AGIRRIEA+TG+ A   +  Q    D+KL   +S  K+ +       +EI +   K
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIESQQKLADKKLHDASSKTKLLE-------KEIQQLKDK 736

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L    A   L   V+D+S  K+     +   +   D+K L+ ++D L+ +I SG+IM+  
Sbjct: 737 LA-SQASSDLISQVQDISGVKV-----LITQLDGADNKALRGMVDELKNQIGSGVIMIGN 790

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +S + K  ++  VT+DL+ +  A +L  + A  + GG GGGRP MAQ+GG +      A+
Sbjct: 791 VS-DDKVGLIAGVTKDLIGQVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAKALPAAL 848

Query: 890 AGVASFL 896
           A V ++L
Sbjct: 849 ATVEAWL 855


>gi|56708179|ref|YP_170075.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670650|ref|YP_667207.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|81597416|sp|Q5NFW7|SYA_FRATT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123169359|sp|Q14HB9|SYA_FRAT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56604671|emb|CAG45729.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320983|emb|CAL09112.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|282159393|gb|ADA78784.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 865

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG  Y +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEVYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ ++++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|319944272|ref|ZP_08018548.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319742567|gb|EFV94978.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 882

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/903 (41%), Positives = 544/903 (60%), Gaps = 70/903 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L+FF+  GH ++ SS ++P +DPTL+F N+GM  FK++F G +K  Y  
Sbjct: 1   MMKSAEIRQQYLKFFESKGHTIVASSPVVPHDDPTLLFANAGMNQFKDVFLGFDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+LLT  F L
Sbjct: 61  ATTAQKCIRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFAWELLTTVFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L +TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+
Sbjct: 121 PPEKLLVTVYAEDDEAYDIWAKQVGVPADRIVRIGDNKGARYASDNFWMMGDTGPCGPCT 180

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS EE G+R+IEIWN+VFMQ+ +    E   LP+ S+DTGMGLER
Sbjct: 181 EIFYDHGPEVAGGPPGSPEEDGDRFIEIWNIVFMQYNRDESGELHPLPRPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT----GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           +A VLQ   +NY+IDLF +L+ A+ +V     G    G+  +  +VI DH+R+  F I D
Sbjct: 241 VAAVLQHVHSNYEIDLFVNLLAAAAKVVQDAGGTPETGSPSL--KVIADHIRACCFTIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   +G  +P +  L+PAL  EMG AYPEL + +  IE
Sbjct: 299 GVVPGNEGRGYVLRRIIRRAVRHGYKMGARQPFLYSLVPALVKEMGEAYPELKRDQARIE 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E L+ E+ RF +T+  G+ LL+G L+ L   ++L+G+ AF+L+DT+G PLD+  D+   R
Sbjct: 359 EVLKGEESRFFETIANGMSLLEGALAGLKGKKVLDGETAFRLHDTYGFPLDLTADVCRER 418

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467
           G+  +D   F  A+  QR +ARA     G+        SL E  G  T+F+GYD L    
Sbjct: 419 GVT-VDEAGFETAMAHQREQARAAGRFKGA--------SLLEYDGETTRFVGYDEL---- 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V A+   G+  +E  +G +  VV D +PFYAE+GGQ
Sbjct: 466 -------------------SAQARVLALYHDGKPAQELKAGDEGVVVLDVSPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G   G G+R  ++D QK    ++ HH  VE G L+   ++   ++   R++ + NH
Sbjct: 507 VGDQGHLQGQGLRFAVSDTQKIQAAVWGHHGRVEEGSLKVGDTVQAQVNTALRQKTTRNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV+Q GS + PD  RFD +H+KP+T  E++++E  VN  I  N 
Sbjct: 567 SATHLLHKALRQVLGDHVAQKGSLVDPDHTRFDFSHNKPMTPEEIQAVEAIVNAEIRSNT 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
             V R M+ ++AIA+GA AL G KY D VRVV V        +  LCGGTHV+ +GEI +
Sbjct: 627 ATVIRQMSYDEAIAAGAMALFGEKYGDVVRVVDVAD------TRELCGGTHVARSGEIGV 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I SE  + AGIRR++ +TG+ A + +  Q   L  +A+ ++     V  RV ++  + 
Sbjct: 681 FKIASEGGVAAGIRRVDGLTGEGALAWIQQQLATLAEVAAAVRAPVAEVPARVAQLQTQV 740

Query: 768 ----RKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
               R+L  + A       + L      L C      + +   +  +D+K L++ +D L+
Sbjct: 741 KDLGRELDRVKASAASSQGQNLAAQATVLPC----GAHLLVTRVDGMDAKALRATVDQLK 796

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQ 876
            +++S +++L  +    K  ++  VT DL++   A + L R++A+V  GG GGG+P  A 
Sbjct: 797 DQLKSLVVVLASVEGNDKIQLVAGVTPDLVNTVKAGEMLGRVAAQV--GGKGGGKPDFAM 854

Query: 877 SGG 879
           +GG
Sbjct: 855 AGG 857


>gi|294505017|ref|YP_003569079.1| alanyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|262363080|gb|ACY59801.1| alanyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262367006|gb|ACY63563.1| alanyl-tRNA synthetase [Yersinia pestis D182038]
 gi|294355476|gb|ADE65817.1| alanyl-tRNA synthetase [Yersinia pestis Z176003]
          Length = 847

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/887 (43%), Positives = 552/887 (62%), Gaps = 62/887 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT E  F+L + +L++TVY+ D+EA+ +W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVTVYETDDEAYNIWANEVG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERY 197
           +  ++IIRI  N       DNFW M +TGPCGPCSEIFFD G+ I GG PGS+EE G+RY
Sbjct: 121 VPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSAEEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIAAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
            VTG     +  +  RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 DVTGATDLSSKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLKTEEEQFARTLERGLALLDDELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
            D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G
Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +      + SL     A+QF GYD ++                         + V A+ +
Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVQQ-----------------------HATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E  +G++  VV ++TPFY E+GGQ+GD G          +TD QK  + I  H 
Sbjct: 448 NGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKGELKNATATFSVTDTQKYGQAIG-HV 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I+  G LR   S+   +D   R ++ +NHSATHLLH AL  +LG HV+Q GS +    L
Sbjct: 507 GILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHLLHAALRNVLGEHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGGTH S TG+I L  I++ES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIALLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIAD 793
           Q + L+ +A  +K    N+  +V  + +      R+LQ +  ++  Q +    S  K+  
Sbjct: 682 QSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKL-- 739

Query: 794 VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           +N +  ++S++D+ E   L++++D L+ ++ S II+L   + + K S+++ VT+DL  + 
Sbjct: 740 INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL-ATTADDKVSLIVGVTKDLTGKV 798

Query: 851 NAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A +L A ++ +V  GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 799 KAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQALPAALASVEAWV 843


>gi|254374194|ref|ZP_04989676.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151571914|gb|EDN37568.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 865

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/901 (42%), Positives = 538/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +G   +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGFK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQFKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  +    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRYTFTSENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|71279113|ref|YP_267790.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|83305842|sp|Q487H5|SYA_COLP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71144853|gb|AAZ25326.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 876

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/918 (43%), Positives = 555/918 (60%), Gaps = 70/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + + + +R  FL+FF    H+++ SSSL+P ND TL+FTN+GMVPFK++F G E   Y  
Sbjct: 2   IKSTAEVRQAFLDFFATKQHQIVKSSSLVPGNDATLLFTNAGMVPFKDVFLGAETRSYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT E  L
Sbjct: 62  ATSAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKNDAISYAWEFLTGELGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPC 172
            + +L +TVY  DEEAF  W+   G+  DKIIRI          +DNFWSM +TGPCGPC
Sbjct: 122 AKEKLLVTVYATDEEAFSYWRDEVGVPEDKIIRIGDKSANKKYESDNFWSMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG PGS  E+G+R+IEIWN+VFMQF +Q+      LP  SIDTGMGLE
Sbjct: 182 SEIFYDHGEDIFGGPPGSPDEDGDRFIEIWNIVFMQFNRQSDGRMDPLPNPSIDTGMGLE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV---TGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           R++ ++Q   +NY+ID+F+ LI+ +  +   + ++++     + RVI DH+RS SFLI D
Sbjct: 242 RISAIMQNVHSNYEIDIFQALIKDTAALLDCSDLEHK-----SLRVIGDHIRSCSFLIVD 296

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P+NEGRGYVLRRI+RRA+ +   L  T      L+ +L  +MG AYPEL Q + +IE
Sbjct: 297 GVVPSNEGRGYVLRRIIRRAIRHGHKLEATGHFFHKLVASLIAQMGEAYPELAQQQAIIE 356

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + LR E+E+FG+TLDRG++LL+ +L++L  D I+ GD  FKLYDT+G P D+  DI   R
Sbjct: 357 KLLRIEEEQFGRTLDRGMILLEDILANLSGD-IIKGDDVFKLYDTYGFPADLTADIARER 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  ID   F+ A+++QR RA+  S   G+   +++     +    T F GYD    S  
Sbjct: 416 NLK-IDKDGFDVAMKQQRERAQQASQ-FGTDYNQQL-----KSDQNTAFKGYDNDSYSAT 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + E      Q P   L +G   I                     V+ D TPFYAE+GGQ+
Sbjct: 469 VVELFNSQDQDPVSQLNSGEQGI---------------------VILDHTPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL----VLTIDYQNRRQLS 584
           GD+G    DG   ++TD  K      + +A   RG   T++ L       I+ + R  + 
Sbjct: 508 GDSGLLHLDGGVFEVTDTIK------LGNAFAHRGTAHTDVGLNRRVKAEINVERRAAIV 561

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV+Q GS    D LRFD +H + +T+ EL  +E  VN+ I 
Sbjct: 562 KNHTATHLLHEALRKVLGEHVTQKGSLCDSDKLRFDFSHFEGVTAQELHDVEQMVNNEIR 621

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    T  M  E+A A GA AL G KY+D VRVV++     G  S  LCGG HV+ TG+
Sbjct: 622 RNHAKQTESMYIEEAKAKGAMALFGEKYDDEVRVVTL-----GDFSIELCGGVHVNRTGD 676

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  L IVSES I AG+RRIEA+TG  A   +  Q   L ++A+ +K    N   +VE + 
Sbjct: 677 IGFLKIVSESGIAAGVRRIEAVTGTGALDFINQQTASLTTIAALVKSDVTNASSKVELLI 736

Query: 765 EEYRKLQLIHAKRKLQLNVE---DLSCHKIADVNFMSHIISE---VDSKELKSVMDALQK 818
              ++L+    + K +L  +   DL  + I ++N +  +I++   V+SK L+ ++D L+ 
Sbjct: 737 SRSKQLEKEIGQLKQELAAQAGSDLVNNTI-EINGVKVLIADLGSVESKALRGMVDELKN 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K+QSG+IML   +   K  ++  VT+DL+ R  A DL  + A+ + GG GGGRP MAQ+G
Sbjct: 796 KMQSGVIMLA-TANGPKVGLIAGVTKDLVGRVKAGDLVNMVAQQV-GGKGGGRPDMAQAG 853

Query: 879 GPNGNKADQAIAGVASFL 896
           G        A+  V+++L
Sbjct: 854 GSQPENITSALESVSAWL 871


>gi|205830254|sp|B1JCG9|SYA_PSEPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            V+Q   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVMQHVHSNYEIDLFQNLLSAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT F+GY+   G        
Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDTATDFVGYNATEG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDTG 
Sbjct: 465 ---------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 510 LQSGAVRFDVQDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +T A++K++ED VN  + +N PV T I
Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVETEI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 629 TDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLEKQ 744

Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|205830482|sp|Q3SLA9|SYA_THIDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 872

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/907 (41%), Positives = 539/907 (59%), Gaps = 56/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S+IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+   Y    + 
Sbjct: 4   SAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L   +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W    G+   +I+RI  N       DNFW+M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER++ V
Sbjct: 184 DHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLERISAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+IDLF+ LI A+ + T     GNN +  +VI DH+R+ SFLI DG++P NEG
Sbjct: 244 MQHVHSNYEIDLFQALIAAAARETNTHDLGNNSL--KVIADHIRACSFLIVDGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        ++P L   MG AYPEL++A+  + + LR E+E
Sbjct: 302 RGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILRQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +T++ G+ +L+  L  L    + +G++AFKL+DT+G PLD+  DI    G+A +D  
Sbjct: 362 RFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAGVA-VDTA 420

Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           +F+ A+  Q+++AR A    LG+G        L     AT F GYD L            
Sbjct: 421 AFDAAMARQKAQARGAGKFKLGAG--------LDYAGEATTFHGYDTL------------ 460

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G   
Sbjct: 461 -----------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQ 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ D  K    +F HH +V+ G L    S++  +D   R +   NHS THL+H 
Sbjct: 510 SKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHLMHK 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  +  RFD     P+T+A+++ +E  VN  I  N P   R+M 
Sbjct: 570 ALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQARVMG 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  IVSES 
Sbjct: 630 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVARTGDIGLFKIVSESG 683

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773
           + AG+RR+EAITG  A ++L  ++++++  A+ LK     +  ++ +  +  R L+  L 
Sbjct: 684 VAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLE 743

Query: 774 HAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL  +  D    + AD+N    ++  +  +D+K L+   D L+ K++S  ++L G 
Sbjct: 744 RLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL-GT 802

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K S++  VT D+  +  A +L  + A  + GG GGG+P +A +GG +      A+A
Sbjct: 803 VADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPAALA 861

Query: 891 GVASFLK 897
            V ++++
Sbjct: 862 SVEAWVQ 868


>gi|77164443|ref|YP_342968.1| alanine--tRNA ligase [Nitrosococcus oceani ATCC 19707]
 gi|254433958|ref|ZP_05047466.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|123594696|sp|Q3JCK8|SYA_NITOC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76882757|gb|ABA57438.1| alanyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090291|gb|EDZ67562.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 873

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 544/910 (59%), Gaps = 58/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F+   HE++PS  L+P NDPTL+FTN+GMV FK +F G+E   Y  
Sbjct: 1   MKSSAELRKIFLDYFRHQSHEIVPSGPLVPANDPTLLFTNAGMVQFKEVFLGREVRAYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+   L
Sbjct: 61  AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+ ED+EA  +W +  G+S ++  R    DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PPERLWVTVFKEDDEAANIWLQEIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS E EG+RY EIWNLVFMQ+++  +     LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PEIEGGPPGSPEQEGDRYTEIWNLVFMQYDRGKEGRLSPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF++LI A   ++G++ +    +  RVI DH+RS  FLI DGI P+NEGRGY
Sbjct: 241 VHDNYNIDLFRNLIAAITALSGIQNQEQTSL--RVIADHIRSCVFLIVDGIQPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL + +  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYRLVEPLVQEMGEAYPELFRLQSQVERVLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL +L+  +  L  D ++ G+  F+LYDT G P+D+  DI   R L  +D+  F 
Sbjct: 359 ETLEQGLKILEQDIIDL-SDAVIPGETIFRLYDTFGFPVDLTADIARERKLT-LDMKGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-------TQFIGYDLLRGSKFMKED 472
           QA+ +QR RARA S               K +YG+       T+F GY+ LRG       
Sbjct: 417 QAMAKQRKRARAAS-------------RFKIEYGSELQMDLETEFTGYEQLRG------- 456

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                         G  + +  + +  E VE+  +G+   VV D+TPFYAEAGGQ+GD G
Sbjct: 457 -------------EGQIAALFRLAETMETVEQLSAGESGMVVLDRTPFYAEAGGQVGDRG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      +TD  K+     VH   V  G LR   S+   +D + R    +NHSATHL
Sbjct: 504 TLRGSNGLFNVTDTHKQG-AAHVHLGEVRLGQLRVGDSIQSEVDRKYRTPTRLNHSATHL 562

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG  V Q GS +  D LRFD +H + + S +L+ IE  VN  I  NLPV T+
Sbjct: 563 LHAALREVLGEGVIQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLVNAKIRANLPVETQ 622

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  + A+ +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG+I L  I++
Sbjct: 623 IMPLQQALDAGVMALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIIN 677

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYR 768
           E  + AGIRRIEA+TG+ A S +   +  L++L   LK S+ + V +     ++  ++ +
Sbjct: 678 EMGVAAGIRRIEAVTGEAALSWVEEGEVCLEALMGRLKASRNSAVDKLEQLQQQTRQQEK 737

Query: 769 KLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +LQ + AK       +  +   +I  +  ++  I  VDSK L++ +D L+ K+ +  ++L
Sbjct: 738 ELQRLKAKLATTGGADLSIQAQEIRGIKVLAARIDGVDSKTLRATVDQLKGKLITAAVVL 797

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT +   R  A DL    A+ + GG GGGRP MAQ+GG N +K D 
Sbjct: 798 -GTVVEDKVVLIAGVTNNATSRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRNPDKLDA 855

Query: 888 AIAGVASFLK 897
           A+  V  +++
Sbjct: 856 ALDLVPKWVE 865


>gi|74316571|ref|YP_314311.1| alanyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|74056066|gb|AAZ96506.1| alanyl-tRNA synthetase, class IIc [Thiobacillus denitrificans ATCC
           25259]
          Length = 886

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/907 (41%), Positives = 539/907 (59%), Gaps = 56/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S+IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+   Y    + 
Sbjct: 18  SAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSRAVSS 77

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L   +
Sbjct: 78  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEK 137

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W    G+   +I+RI  N       DNFW+M +TGPCGPC+EIF+
Sbjct: 138 LWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCTEIFY 197

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  + GG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER++ V
Sbjct: 198 DHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLERISAV 257

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+IDLF+ LI A+ + T     GNN +  +VI DH+R+ SFLI DG++P NEG
Sbjct: 258 MQHVHSNYEIDLFQALIAAAARETNTHDLGNNSL--KVIADHIRACSFLIVDGVIPGNEG 315

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        ++P L   MG AYPEL++A+  + + LR E+E
Sbjct: 316 RGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILRQEEE 375

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +T++ G+ +L+  L  L    + +G++AFKL+DT+G PLD+  DI    G+A +D  
Sbjct: 376 RFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAGVA-VDTA 434

Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           +F+ A+  Q+++AR A    LG+G        L     AT F GYD L            
Sbjct: 435 AFDAAMARQKAQARGAGKFKLGAG--------LDYAGEATTFHGYDTL------------ 474

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G   
Sbjct: 475 -----------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQ 523

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ D  K    +F HH +V+ G L    S++  +D   R +   NHS THL+H 
Sbjct: 524 SKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHLMHK 583

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  +  RFD     P+T+A+++ +E  VN  I  N P   R+M 
Sbjct: 584 ALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQARVMG 643

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  IVSES 
Sbjct: 644 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVARTGDIGLFKIVSESG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773
           + AG+RR+EAITG  A ++L  ++++++  A+ LK     +  ++ +  +  R L+  L 
Sbjct: 698 VAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLE 757

Query: 774 HAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL  +  D    + AD+N    ++  +  +D+K L+   D L+ K++S  ++L G 
Sbjct: 758 RLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL-GT 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K S++  VT D+  +  A +L  + A  + GG GGG+P +A +GG +      A+A
Sbjct: 817 VADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPAALA 875

Query: 891 GVASFLK 897
            V ++++
Sbjct: 876 SVEAWVQ 882


>gi|68171547|ref|ZP_00544925.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67999031|gb|EAM85704.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 887

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/896 (42%), Positives = 545/896 (60%), Gaps = 57/896 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS++R +F++FF KNGH++ PSS LI  +DP+L+FTN+GMV FK +FT          T+
Sbjct: 7   VSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANVNTATS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE  L + 
Sbjct: 67  SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKELSLSKD 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY TVY +D+EAF LWKKISG+S  +II+ITT+DNFWSM  TGPCGPCSEIF+D G+ +
Sbjct: 127 RLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYDYGDNV 186

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ EE G R+ EIWNLVFMQ++++   E  +LPK  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI LFK LI AS++ +G      N + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDISLFKALIAASKEQSG---NSTNELAHRVIADHVRSAAFLIAEGLTPGNEGRNYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPAL-----CTEMGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L Y + LM  + P L     C  M   YPELI AK LI   L+ E+E 
Sbjct: 304 RIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILKIEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L +L   +IL+GD+ FKLYDT+G P+DI  DI+  +G+   D   
Sbjct: 364 FKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK-FDEQG 422

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   + +Q+ R++  HS+       E+ W  +KE+ G+T+ +GY+        + D K  
Sbjct: 423 FYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKSVGYE--------RYDTK-- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533
                       ++++  +    + VE A  G KV ++ D TPFYAE+GGQ GD G    
Sbjct: 473 ------------ATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGDVGIFNV 520

Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
                      D I  ++ D +K  + +++H  I+++G L     +   ID + RR L  
Sbjct: 521 IVRQEKELFANDNIA-EVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERRRNLCA 579

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH+ L + + S + Q GS ++ + LRFD ++   +T  +L  IED +  +I+ 
Sbjct: 580 NHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMYSLISG 639

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N PV++ + + +DA+A GA AL   KY +  VRVVS++       S  LC GTHV  T E
Sbjct: 640 NNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIK------DSKELCCGTHVKYTSE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    IVSE+SI  GIRRIEA+TG+ A  +   Q++ L S+A  +KV   NV+ +++++ 
Sbjct: 694 IGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQIDKLD 753

Query: 765 EEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++ ++L+   +     + N++ ++  KI +V+F+   +S +    ++  ++   K + + 
Sbjct: 754 KKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---KHLTAD 810

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            I+L      +    ++ V   L  +  AVD  ++   ++    GGG   +AQ  G
Sbjct: 811 RIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMV-KSKGGGNAQLAQING 865


>gi|88607771|ref|YP_505615.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|123494530|sp|Q2GJ36|SYA_ANAPZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88598834|gb|ABD44304.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 876

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/879 (42%), Positives = 527/879 (59%), Gaps = 52/879 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           S+VS IR  FL+FF+K GH   PS+ LI   D +L+FTN+GMVPFK  F      V  A 
Sbjct: 4   SSVSGIREAFLDFFEKQGHTRYPSAPLIAEGDASLLFTNAGMVPFKQRFITGVSDVKTA- 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW  +TKE  L 
Sbjct: 63  TTSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKETAIELAWRFVTKELGLS 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G +  KIIRI+T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 123 KERLWITVYSEDQEAFDIWKKITGYTDHKIIRISTSDNFWSMGDTGPCGPCSEIFYDYGD 182

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGGLPG+ E +G RY EIWNLVFMQ+ +    E   LP+  IDTGMGLER+A V+Q  
Sbjct: 183 GVPGGLPGTDESDGARYTEIWNLVFMQYNRDESGELHKLPRGCIDTGMGLERIAAVMQGV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D+F+ +I  S  + G     ++ + HRVI DH+R++SFLIA+G+ P NEGR YV
Sbjct: 243 CDNYETDMFQAIIDRSRSIFGSH---DHPIAHRVIADHVRAASFLIAEGLTPGNEGRNYV 299

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ Y   +   +  +  ++P L  E     MG+AYPE+++A+  I  TL+ E+
Sbjct: 300 LRRIIRRAVRYIYQIVGDKFSLHEVVPVLTREGSAGYMGNAYPEIVKAEQSIVSTLKIEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + F  TL RG  +L+  +  L   E+L+G++AFKLYDT+G PLDI  D+   RGL   D 
Sbjct: 360 DGFADTLRRGTGILEQEIRGLKSGEVLSGEIAFKLYDTYGFPLDITLDVAKERGLK-FDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + +Q+ ++R H    GSG  +     +  K+ AT F+GY+  R           
Sbjct: 419 DGFNRCMAKQKEQSRKH--WKGSGEAQTASSHILNKHKATSFVGYENHR----------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--- 532
                       V S+VK I   GE V     G++   V D TPFYAE+GGQ GDTG   
Sbjct: 466 ------------VKSMVKEIFCSGEAVTSMGEGEEGIAVLDITPFYAESGGQEGDTGLLK 513

Query: 533 -CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                 G   ++ D   K+  + +H   V RG L+    +   +D Q R +L  NHSATH
Sbjct: 514 VVTTKCGSVAEVVDT-TKSNNVHLHKIRVIRGTLKVGDVVEAVVDKQRREKLRANHSATH 572

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L   L T++G  + Q GS +  D LRFD +H+ P+T  +L+++E  VN  I  N PV+ 
Sbjct: 573 ILQSVLRTLIGEGIQQKGSLVAADKLRFDFSHALPLTKEQLRTVEMEVNRQIMANQPVII 632

Query: 652 RIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              + EDA+  GA AL G KYND+ VRVVS+        S  LCGGTHV  TG+I    I
Sbjct: 633 DHCSLEDAVQEGAIALFGEKYNDQNVRVVSMG------SSKELCGGTHVRFTGDIGAFRI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE+ I  G+RRIEAITG    S +    E L+ +A  L V    V+ ++++++ E R+ 
Sbjct: 687 ISETGIAQGVRRIEAITGHEVVSSMNRDSESLQQVAECLSVPVDQVIEKLKKVFVEQRE- 745

Query: 771 QLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             I+ K          SC K  +V + +   + E  +  ++ V   +++K+ +  ++ + 
Sbjct: 746 --INKKMATICYTHMNSCAKCIEVGSEIKLYVGEFSNIPVEVVASYVKEKMHTNEVLAIS 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
            +  K+ + ++ V E  + R  A D+ +   ++ G GGG
Sbjct: 804 TTDGKRTTFIVGVGESAIKRIKATDIVKALQQIQGKGGG 842


>gi|302389912|ref|YP_003825733.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200540|gb|ADL08110.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 880

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/916 (41%), Positives = 560/916 (61%), Gaps = 59/916 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FL FF+  GH  +PSSSL+P NDPTL+FTN+GM  FK++F G +K  +  
Sbjct: 1   MMTSSEIREKFLSFFESKGHVRVPSSSLVPYNDPTLLFTNAGMNQFKDVFLGLKKLPFTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLD+VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 61  ATTAQKCVRAGGKHNDLDSVGRTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTEVLQL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++++Y+ D+EAF LW++++ +  +KIIR+   DNFW+M +TGPCGPCSEI+ D+G
Sbjct: 121 PKERLWVSIYENDDEAFYLWQEVANIPPEKIIRLGEKDNFWAMGDTGPCGPCSEIYIDRG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C          + +R+ E+WNLVFMQ+ +        LP+ SIDTGMGLER+ATV+
Sbjct: 181 EEHRCNSPECKIGVCDCDRWRELWNLVFMQYNRDEHGNLTPLPRPSIDTGMGLERIATVM 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +NYD DL + +I   E +TG KY G+      RVI DH+R+ +FLI+DG+LP NEG
Sbjct: 241 QNVYSNYDTDLLRPIIAFVENMTGKKYYGDERGFPFRVIADHIRAITFLISDGVLPGNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           R YVLRRI+RRA  + + L    P +  ++P + + MG AYPE+ + +  I+   + E+E
Sbjct: 301 RSYVLRRILRRAARFGKELDLNRPFLYKIVPVVVSLMGDAYPEIKKNQDYIQRVTKFEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL LL   ++ L +   +++ G++AF LYDT+G PLD+ +D+   +G   ID
Sbjct: 361 RFHETLNDGLKLLFEGMAELEEKNQKVIPGEMAFMLYDTYGFPLDLTEDVAREKGF-NID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY------GATQFIGYDLLRGSKF 468
             +F + +E QR +A+A           K  + + E Y        T F+GYD       
Sbjct: 420 REAFEELMERQRKKAKA---------ARKEEYPVNELYEILAPMEPTIFVGYD------- 463

Query: 469 MKEDRKVLCQKPPIDL-TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                  L  +  ++L  +G   +V+A  + GEI+          +V D+TPFY EAGGQ
Sbjct: 464 ------CLSTEAQVELIISGKEPVVEADEKAGEII----------LVLDRTPFYGEAGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG    +    ++ D Q+  +G   H   VE+G +R +  +  ++D   RR ++ NH
Sbjct: 508 VGDTGIIENENFTFRVRDTQRTPDGKIYHIGKVEKGFIRLKERVTASVDEARRRDIARNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV+Q GS +  D LRFD +H   +T  E+K IED VN  I  +L
Sbjct: 568 SATHLLHRALKDVLGEHVNQAGSLVAHDRLRFDFSHFAALTEDEIKKIEDLVNKAILDDL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVV      E+A  +GA AL G KY ++VR+VS+     G +S  LCGGTHVSST +I L
Sbjct: 628 PVVVEETTVEEAQKAGAIALFGEKYGEKVRMVSM-----GNYSKELCGGTHVSSTSKIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SESS+ AG+RRIEA+TG    ++       +  L S LK    ++  +VEE++E  
Sbjct: 683 FKIISESSVGAGVRRIEAVTGWNLLNYTRENLAIISDLVSLLKSKPQDLTAKVEELFETI 742

Query: 768 -RKLQLIHAKRKLQLN--VEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            R  + + + R+  +N  VE+++  KI   D+N +S  + +    +L+++ D L++KI+S
Sbjct: 743 KRNERQVESLRQRLINTRVEEIAAGKILLGDINVISAKVDDASMDDLRNISDVLRQKIKS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           GI++L G +   +  ++  VT+DL+++ ++A  + + +A+V  GG GGGRP  AQ+GG  
Sbjct: 803 GIVVL-GSTSGDRVFLVCSVTKDLVEKGYHAGKIVKQAAEV-AGGSGGGRPDFAQAGGKY 860

Query: 882 GNKADQAIAGVASFLK 897
            +K +QA+      +K
Sbjct: 861 PDKLEQALKVAVDVIK 876


>gi|118602853|ref|YP_904068.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|205830196|sp|A1AXE0|SYA_RUTMC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118567792|gb|ABL02597.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 865

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/903 (41%), Positives = 548/903 (60%), Gaps = 52/903 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F+  GH +  S+SLIP ND TL+F N+GMV FK++F+G EK  Y    +V
Sbjct: 4   AQIRQKFLDYFESKGHTIESSASLIPHNDKTLLFVNAGMVLFKDVFSGVEKRPYMRAVSV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LTKE +L + +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIYYAWEFLTKELNLPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V++ED+EA  +W    G   ++I R  T DNFW M +TGPCGP SEIF+D GE I 
Sbjct: 124 LWVSVFEEDDEAENIWINEIGFPKNRISRCGTKDNFWQMGDTGPCGPSSEIFYDYGEHIA 183

Query: 185 GGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PG + E+G+RYIEIWNLVF QF++Q       L    +DTGMGLER+A VLQ K NN
Sbjct: 184 GGPPGHADEDGDRYIEIWNLVFTQFDKQEDGHLKPLAVPCVDTGMGLERLAAVLQHKNNN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEGRGY 299
           YD D F+ L++A   +  +  + NNI N+    RVI DH+RS++F+I DG+ P+NEGRGY
Sbjct: 244 YDTDGFQSLVKA---IVNLTPKSNNIKNNNASVRVIADHIRSTAFMIVDGVNPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + +   +G  +     L P L  E   AYPEL QA   +E+ L+ E++RF 
Sbjct: 301 VLRRIIRRGIRHGHKMGIDKVFFYRLAPVLALEFKDAYPELKQALPKVEKVLKREEQRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+G+ LL+  +++L   EI +G   FKLYDT+G P+D+  DI   R L  ID++ F 
Sbjct: 361 QTLDQGMRLLEDAITNLNGSEI-DGKTVFKLYDTYGFPIDLTADIARERHLT-IDMLGFE 418

Query: 420 QALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             +  QR RAR A    +     + I        G T+F+GY+ L               
Sbjct: 419 FEMTRQRDRARQAGDFKISKKNVDII--------GVTEFLGYEQLE-------------- 456

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    +SSI+ A+V+  ++VEE  +G+   VV  Q+ FYAE+GGQ+GD+G      
Sbjct: 457 --------NISSIL-ALVKNSKLVEEIKAGEYGIVVLAQSSFYAESGGQVGDSGVLSNAK 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           I  ++    K+  G+F H+ ++ +G+L+   ++   +D ++R+ ++ NHSATHLLH AL 
Sbjct: 508 IEFKVDHTNKQKSGVFEHYGVLNKGVLKVGDTIQANVDKKSRKCIARNHSATHLLHAALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG  V+Q GS +  + LRFD +H + IT +++  IE  +N  I  N  V T I+N E+
Sbjct: 568 IVLGETVTQKGSLVDSEKLRFDFSHDEVITKSDINKIEGMINRKILGNTKVHTDIINIEN 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A    A AL G KY+D VRV+++  +D  V    LCGGTHV   G+I L  I SES + A
Sbjct: 628 AKKKDAIALFGEKYSDTVRVLTMGKDDFSVE---LCGGTHVKQLGDIGLFRITSESGVSA 684

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG  A          L  ++   K +   VV +V +  ++ ++L  Q+   +
Sbjct: 685 GVRRIEALTGYDAYQFDNQMQNSLSEISQMTKSNNAQVVEKVTQFIKQQKELEEQITIFQ 744

Query: 777 RKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++L  N  +DL     ++ ++  +S ++     K+L+++ D L+ K+ S +I+L  +S +
Sbjct: 745 KQLTSNQGDDLIGQVQEVRNIKLLSTVVEGSSGKDLRNIADKLKDKLGSAVIVLAVVSND 804

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S+++ VT+DL  R+ AV +    A+ + GG GGGRP MAQ GG       +A+A V 
Sbjct: 805 -KVSLVVGVTKDLTKRYQAVKILNYVAEQI-GGKGGGRPDMAQGGGTQPEYLAKALASVK 862

Query: 894 SFL 896
           S +
Sbjct: 863 SLI 865


>gi|254369401|ref|ZP_04985413.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122351|gb|EDO66491.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 865

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++II I ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIHIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL   
Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLL+ AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETSIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858

Query: 896 L 896
           +
Sbjct: 859 I 859


>gi|90416725|ref|ZP_01224655.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90331478|gb|EAS46714.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 864

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/893 (43%), Positives = 554/893 (62%), Gaps = 51/893 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL ++    H ++PSSSL+P NDPTL+FTN+GMV FK++F G EK  Y    + 
Sbjct: 4   ADIRDAFLNYYASKQHSIVPSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRDYNRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L + R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEFLTEVLKLPKER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ITV+  D+EA  +W    G+  +++ R+   DNFW M +TGPCGP +EIF+D GE IP
Sbjct: 124 LWITVHISDDEAADIWVNEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSTEIFWDHGEDIP 182

Query: 185 GGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS ++  +RYIEIWNLVFMQFE+ +  +   LPK SIDTGMGLER+A V+Q   NN
Sbjct: 183 GGPPGSPDDDLDRYIEIWNLVFMQFERDSTGKMTPLPKPSIDTGMGLERVAAVMQGVHNN 242

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YDIDLF+HLI+A+ ++ G+     N +  +V+ DH+RS +FL+ DG++P+NEGRGYVLRR
Sbjct: 243 YDIDLFQHLIKAAAKIIGVTDLAENSL--KVVADHIRSCAFLVVDGVVPSNEGRGYVLRR 300

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG +      L+ +L   MG AYPEL+  +  I  T++ E+E+F +TLD
Sbjct: 301 IIRRALRHGHNLGASGSFFHKLVVSLGEVMGEAYPELLSMQQEIIVTIKKEEEQFARTLD 360

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ +L+  L +L  ++ L G++ F+LYDT G P D+  DI   RG + +D+  + + +E
Sbjct: 361 KGMGVLEAALENLTAEQ-LPGELIFQLYDTFGFPTDLTNDIARERGYS-MDMEGYEECME 418

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR+RAR+ S   G   +E I        G+T+F+GY+ L                    
Sbjct: 419 AQRARARSASQ-FGLDYSESIRVE-----GSTEFVGYNSLEH------------------ 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S+ V A+   GE V  A    +V V+   TPFYAE+GGQ+GD+G       ++++
Sbjct: 455 -----SADVVALYSAGEEVSAAGMDAEVAVILGSTPFYAESGGQVGDSGYLQTASAKIEV 509

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TD +K  E   +H   V  G L    ++  T+D   R   ++NHSATHLLH AL  ILG 
Sbjct: 510 TDCRKAGEH-HLHIGKVLSGELNVGDAVTATVDCSVRTATALNHSATHLLHSALQQILGE 568

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +    LRFD +H + I++ +++ IE  VN  I +N PV T +M+ ++A+  G
Sbjct: 569 HVNQKGSLVDSQRLRFDFSHGESISAQQIRDIEHRVNREILRNTPVQTDVMSMDEAVEKG 628

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY   VRV+S+    GG  S  LCGGTH + TG+I LL I +ESS+ AG+RRI
Sbjct: 629 AMALFGEKYGSEVRVLSM----GGDFSVELCGGTHANRTGDIGLLKISAESSVSAGVRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKL-Q 780
           EA+TG+ A ++     + +  +A+ L+ ++ +V  +  ++ E+ RKLQ  +   K KL  
Sbjct: 685 EAVTGEAAIAYCDALQDTVSEMANVLRAARHSVADKARQVVEDNRKLQKEIDALKSKLAN 744

Query: 781 LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +  DL     +I   + +S ++   D+K L+ V D ++ K+QSG+ ML  +  + KA++
Sbjct: 745 ASGNDLMAGLREINGFSVLSTVVEGADAKSLRGVADQVRSKLQSGVFMLAAVDGD-KAAL 803

Query: 839 LIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  VT+DL D+  A DL + ++A+V   G GGGR  MAQ  G  G+  + A A
Sbjct: 804 VAGVTQDLTDKLKAGDLLKYVTAQV--DGKGGGRADMAQ--GAAGSTVNLAAA 852


>gi|220931419|ref|YP_002508327.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992729|gb|ACL69332.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 876

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/904 (42%), Positives = 553/904 (61%), Gaps = 56/904 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++    +R  +L+FF+  GH +LPS+ LIP NDP+L++ N+GM PFK  F G++KP    
Sbjct: 2   VTTSDELRKAYLDFFKDRGHLVLPSAPLIPRNDPSLLWINAGMAPFKPYFDGRKKPPKTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           ++T QKC+R     ND++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +T+  +L
Sbjct: 62  ISTSQKCIRT----NDIENVGKTARHLTFFEMLGNFSFGDYFKEEAIEWAWEFVTRVLNL 117

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL+IT+Y +D+EAFK+W    G+  ++I+R+   DNFW +  TGPCGPCSEI +D+G
Sbjct: 118 EENRLWITIYKDDDEAFKIWHDKVGVPENRIVRMGKKDNFWEIG-TGPCGPCSEIHYDRG 176

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E        SSE     EG+R++EIWNLVF Q+ +    E   LP+ +IDTGMGLER+A+
Sbjct: 177 EE----FGNSSEDVIGGEGDRFLEIWNLVFTQYNRTEDGEYLSLPQKNIDTGMGLERVAS 232

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ   +N++ DL K +I    Q +G++Y     V  RVI DH+R+ +  I DG+LP+NE
Sbjct: 233 LLQGVNSNFETDLLKPIINFVSQDSGVQYTEGQRVPFRVISDHIRAVTMAIHDGVLPSNE 292

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYV+RR++RRA+ Y   L Y EP +  ++P +   M   YPEL + +  +   ++SE+
Sbjct: 293 GRGYVIRRLLRRAVRYGGKLNYEEPFLYKIVPVVVDIMSGGYPELKEKEEHVSSVVKSEE 352

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL++GL +L+ ++  +    ++IL+G  AFKLYDT+G PLD+ +D+L   G   +
Sbjct: 353 ERFFQTLEQGLNILNEMMEEMKDKGEKILSGKNAFKLYDTYGFPLDLTRDVLAEHGYK-V 411

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTT-EKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           D   F + +E+QR RAR     +G SGT  E I+  L+E+ G T+F GY  L        
Sbjct: 412 DEDVFTREMEKQRERARQARADVGFSGTDGEGIYKELREELGETEFTGYRSL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +  + IV  IV+ G+ VE   +G+K E++ + TPFYA  GGQ+GD 
Sbjct: 464 --------------SNTTRIV-GIVKDGQPVESLNNGEKGEIILNVTPFYARGGGQVGDK 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  I    R ++ D +KK  G+ VH+  VE+G  R +  +   +D + R  ++ NHS TH
Sbjct: 509 GILIDSEHRARVYDTRKKG-GLTVHYTEVEKGEFRIDQVVEARVDEELRYNIARNHSTTH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  +LG HV+Q+GS + PD LRFD +H  P+T  E+  IED VN+ I  NLPV  
Sbjct: 568 LLHKTLKEVLGDHVNQSGSLVAPDRLRFDFSHYAPLTEEEINRIEDTVNEKILSNLPVEI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M  E A   GA AL G KY   VRVV +     G +S  LCGGTHV  TGEI    IV
Sbjct: 628 LEMPFEKAKEMGAVALFGEKYGHIVRVVKI-----GDYSIELCGGTHVDRTGEIGSFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE S+ AG+RRIEA+TG+    H+   D  +K ++S LK S   V+GR+  + EE  +L+
Sbjct: 683 SEGSVAAGVRRIEALTGKSVLEHIRKNDNTIKKISSILKTSPDEVIGRLSGLLEEQNELE 742

Query: 772 LIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K QL    V++L     KI  V  ++  +  ++S  L+ + D L++K++SGII+
Sbjct: 743 NKLQSLKDQLATSRVDELVDEVQKINGVKVLTAELKGIESDNLRKLSDKLKEKMESGIIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   +   K   + VVT+DL++R F+A  L    A+V  GGGGGGRP MAQ+GG   +K 
Sbjct: 803 LAS-NLGNKVIFVSVVTDDLVERGFHAGKLIGKVARVT-GGGGGGRPDMAQAGGKKVDKI 860

Query: 886 DQAI 889
            +A+
Sbjct: 861 TEAL 864


>gi|238761735|ref|ZP_04622710.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238700249|gb|EEP92991.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 847

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/887 (43%), Positives = 551/887 (62%), Gaps = 62/887 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTSAQWFNLPKEKLWVTVYETDDEAYEIWANDIG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+EE G+RY
Sbjct: 121 IPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG     +  +  RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 EVTGATDLSSKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L T MGSA  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLITVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
            D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G
Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +      + SL     A+QF GYD ++                         + V A+ +
Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVQ-----------------------QQATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E   G++  VV +QTPFY E+GGQ+GD G          + D QK  + I  H 
Sbjct: 448 NGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVADTQKYGQAIG-HL 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    L
Sbjct: 507 GQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGG H + TG+I L  I+SES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGIHANRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIAD 793
           Q + L  +A  +K    N+  +V  + +      R+LQ +  ++  Q +    S  K+  
Sbjct: 682 QSDLLSDVAHLVKGDTNNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKL-- 739

Query: 794 VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           +N +  ++S++D+ E   L++++D L+ ++ S II+L   + + K S+++ VT+DL  + 
Sbjct: 740 INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TTADDKVSLIVGVTKDLTGKV 798

Query: 851 NAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A +L A ++ +V  GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 799 KAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843


>gi|254524059|ref|ZP_05136114.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219721650|gb|EED40175.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 882

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/898 (43%), Positives = 547/898 (60%), Gaps = 59/898 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG     N  +  RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENKSL--RVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAMDTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGK-ASNGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA     G G T  +   L      T F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAG-KFGGGVT--LPAELVATLSPTVFLGYDRLQ---------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +G+S  V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 471 ----------ADGLS--VLALLKDGRPVQSADAGDSVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H   +  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGTLSEGGLKIGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHTM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 AMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  H+  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDHVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLE--- 750

Query: 775 AKRKLQ--------LNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             R+L+            DLS    ++A V  ++  +   D+K L+  MD L++++   +
Sbjct: 751 --RELEAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAV 808

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I+L G +++ KA+++  V      +  A +L    A  + GG GGGRP +AQ GG +G
Sbjct: 809 IVLAG-AQDGKAALVAGVNGSATGKVKAGELLSHIAGQI-GGKGGGRPDLAQGGGEDG 864


>gi|52842026|ref|YP_095825.1| alanyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148359345|ref|YP_001250552.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|296107392|ref|YP_003619092.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|59798497|sp|Q5ZUJ9|SYA_LEGPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830130|sp|A5ICV6|SYA_LEGPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52629137|gb|AAU27878.1| alanyl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148281118|gb|ABQ55206.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|295649293|gb|ADG25140.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610501|emb|CBX00082.1| alanyl-tRNA synthetase [Legionella pneumophila 130b]
          Length = 860

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/885 (42%), Positives = 545/885 (61%), Gaps = 58/885 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ   T 
Sbjct: 4   SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRAATA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +   R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G  + 
Sbjct: 124 LWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEVA 183

Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q   +N
Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHPLPKPSVDTGMGLERLAAVIQGVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNH---RVIVDHLRSSSFLIADGILPANEGRGY 299
           Y+ID F++LI+A  Q+      G +I +NH   +VI DH+RS SFLI DG+LP+NEGRGY
Sbjct: 244 YEIDSFQYLIKAIAQL------GQDIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F 
Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFSKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL   + +L   E L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FN
Sbjct: 358 RTLEQGLRLLQDHIKNLQGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++QR +++A S      TT+  + ++ +    ++F GY+                  
Sbjct: 416 QLMQQQREQSQAAS----QFTTD--YHAVSQLDHQSEFHGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG   
Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEF 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+ D QK  + + VH+  V +G L  ++ +   +D   R  + +NH+ATHLLH AL  
Sbjct: 507 TFQVDDTQKVGQAV-VHYGKVIKGELTLDLLIHAQVDNIRRDAIRLNHTATHLLHAALKK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+G HV Q GS +  +  RFD +H + +T  +++ IE+ VN  I  N  V+T++M+ E A
Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +G
Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--- 776
           IRRIE +TG+ A + +  Q   + +LA+ LK +  ++  +V ++  + +  + + AK   
Sbjct: 681 IRRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLS 740

Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I ++ 
Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           K +V+  V+++++ +  A   A+L   +   G GGGR  MAQ GG
Sbjct: 800 KMNVIAGVSKNIIGK--APSAAQLVRHLC--GKGGGRDDMAQGGG 840


>gi|83647875|ref|YP_436310.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123531367|sp|Q2SBT9|SYA_HAHCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83635918|gb|ABC31885.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 876

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/911 (43%), Positives = 548/911 (60%), Gaps = 60/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ FL++FQ+NGHE++ SSSL+P +DPTL+FTN+GM  FK++F G++K  Y   TT 
Sbjct: 4   SEIRSAFLKYFQRNGHEVVASSSLVPADDPTLLFTNAGMNQFKDVFLGKDKRNYDRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT     ++D+
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWEFLTSSDWLNIDK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+E+F +W    G+  ++IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 SKLTVTVYASDDESFDIWANEIGVPEERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS  E+G+R+IEIWN+VFMQF +    E   LPK S+DTGMGLER++
Sbjct: 184 FYDHGPHIAGGPPGSPDEDGDRFIEIWNVVFMQFNRTADGEMHPLPKPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q   +NY+IDLF+ L+ +AS+ + G   E   +   RVI DH+RSSSFLIADG+LP 
Sbjct: 244 ALMQGVHSNYEIDLFQELLAEASKVLGGASIEEPAL---RVIADHIRSSSFLIADGVLPE 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GRG VLRRI+RRA  Y   +G TEP +  L+  L   MG AYPEL  ++  IE+TL  
Sbjct: 301 NIGRGSVLRRIIRRAARYGNKVGATEPFLHKLVGKLVELMGDAYPELKASQNKIEKTLLL 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD+GL LL+  L  L K   + G   F LYDT+G P+++  DI   R LA +
Sbjct: 361 EEEQFAKTLDKGLKLLEHELEQL-KGMTIPGKTIFTLYDTYGFPVELTNDIARERSLA-M 418

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D+  +   +E QR RAR A S G+       I  S       ++F GY  L GS      
Sbjct: 419 DMDGYEVEMEAQRKRAREAGSFGVDYNAGLNIDVS-------SEFTGYTELAGS------ 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            K L                 A+    +  +    GQ+  VV D+TPFYAE+GGQ+GDTG
Sbjct: 466 YKAL-----------------ALFAGSDKADALTVGQQGLVVLDKTPFYAESGGQVGDTG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D +K+   I VH   V  G ++   ++   +D   R+  ++NHSATHL
Sbjct: 509 VLKTDTGVFVVKDTKKEGAAI-VHIGAVSEGEIKVGQTVTAEVDRHKRKATALNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD  H +P+T  +++ +E  VN  I  N  V T 
Sbjct: 568 LHAALRKVLGDHVAQKGSLVDPERLRFDFAHFEPMTQEQIRQVESIVNAQIRANTSVSTE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY D VRV+++   D    S  LCGGTHV  TG+I +  I S
Sbjct: 628 VMGMDAARERGAMALFGEKYGDTVRVLAMGESD---FSIELCGGTHVERTGDIGMFVIAS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E+   AG+RRIEA+TGQ A + +   D  L+ +A  +K ++     +V  + E  R+L  
Sbjct: 685 EAGTAAGVRRIEALTGQPAENWVQSSDALLRDIAVLVKGNRETAADKVRALIERSRQLEK 744

Query: 771 QLIHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDA---LQKKIQSGIIM 826
           ++   K KL  +   DL+   + DV  +  + +++D  + K++MD    L+ K+   +++
Sbjct: 745 EVDQVKAKLASSAGSDLAASAV-DVKGLKVLAAKLDGVDRKALMDTVDQLKNKLGQAVVL 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ KAS++  VT+    +  A DL ++ A+ L GG GGGRP MAQ GG    K D
Sbjct: 804 LASV-EDGKASIVAGVTKAESAKVKAGDLVKMVAEQL-GGKGGGRPDMAQGGGVELGKLD 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 AALASVNAWVE 872


>gi|70731848|ref|YP_261590.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|83305855|sp|Q4K843|SYA_PSEF5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68346147|gb|AAY93753.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 874

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/891 (43%), Positives = 533/891 (59%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ A+ +  G   +     + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLDAAAKAIGCTNDAQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L  +D
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGSVVPGDVVFKLYDTYGFPMDLTGDIARERNLT-LD 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S G+   +  K+         AT+F GY    G        
Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATEFTGYHATSG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ V A+ ++G+ V+    G++  VV DQTPFYAE+GGQ+GD G 
Sbjct: 465 ---------------SAKVVALYKEGQSVDMLSEGEEGVVVLDQTPFYAESGGQIGDCGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH ++ +G L     +   +D Q R   S+NHSATHLL
Sbjct: 510 LQAGNARFDVRDTTKTG-GAFLHHGVLAKGSLTVGAPVETQVDAQVRHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N PV T  
Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNTPVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A   GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I SE
Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIGLLKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E+LK  A+ +K S+ N++ ++  + E  R L  Q
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLVKGSRDNLIDKLSAVLERNRLLEKQ 744

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIMLV 828
           L   + K      D    + ADV  +  + + +D ++ K+++   D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSAQAADVKGVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E+K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 GSVHEEKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|205830249|sp|A5UY81|SYA_ROSS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 905

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/927 (41%), Positives = 542/927 (58%), Gaps = 69/927 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y   TTV
Sbjct: 7   AAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRATTV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK F+L   R
Sbjct: 67  QKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVFELPVER 126

Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           L+ TV++       D+EA +LW   +G   D+++R    DNFW MA+TGPCGPCSEI   
Sbjct: 127 LWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPCSEITIY 185

Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ +      G + +   Y+EIWN VFMQFE+   Q    L + S+DTGMGLERMA V+
Sbjct: 186 IGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERSTMQP---LHRPSVDTGMGLERMAMVM 242

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           Q   + Y+ DLF  LI+    + G     Y    +  +R + DH R+ +FLIADG+LP N
Sbjct: 243 QGVHSTYETDLFIPLIERQLALLGADESTYRAR-VAPYRAVADHSRAVAFLIADGVLPGN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GR YVLRRI+RRA+   R +G+ +P +  ++ A+  +MG+ YPEL +    I ET+  E
Sbjct: 302 TGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILETVDLE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F +TL  G+ +L+ V+  +      ++ GD AF L DT+G PLD+ Q I    GL  
Sbjct: 362 ERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT- 420

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   + + +EEQR R R  +         ++W  +      T+F GY  + GS      
Sbjct: 421 VDEAGYERRMEEQRDRGR-RAAQFKRAAEAEVWAGID--LPPTRFTGYAAVSGS------ 471

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                             +V+AIV  G+ V EA +GQ+V++  D TPFYAE+GGQ+GDTG
Sbjct: 472 -----------------GVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQVGDTG 514

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             IG   R+++ DVQ+   G+ VH+ +VE G +     +   +D   R  +  NH+ATHL
Sbjct: 515 VLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNHTATHL 574

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG H +Q GS + PD LRFD TH++P+T  +L  IE  VN  I  + PVV +
Sbjct: 575 LHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADTPVVWQ 634

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSV---------------EYEDGGVH--SSALCG 695
            ++ + AI +GA AL G KY D VR+V++               E E  G    S  LCG
Sbjct: 635 ELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCSRELCG 694

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV  +GEI L  I+SESS+ AG+RRIEA+TG  A + +  Q   L+++A+ +   Q  
Sbjct: 695 GTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVGAPQTQ 754

Query: 756 VVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELK 810
           +V RVE +  E ++ Q        R  + N+E L  S   + D+ F++  +   ++  L+
Sbjct: 755 LVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPNAARLR 814

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
            + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ GG GG
Sbjct: 815 EMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV-GGSGG 872

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           GRP MAQ+GG +  K  QA+  VA+ +
Sbjct: 873 GRPDMAQAGGRDSAKIPQALEHVAAVI 899


>gi|148657329|ref|YP_001277534.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148569439|gb|ABQ91584.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 931

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/926 (41%), Positives = 542/926 (58%), Gaps = 67/926 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y   TTV
Sbjct: 33  AAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRATTV 92

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK F+L   R
Sbjct: 93  QKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVFELPVER 152

Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           L+ TV++       D+EA +LW   +G   D+++R    DNFW MA+TGPCGPCSEI   
Sbjct: 153 LWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPCSEITIY 211

Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ +      G + +   Y+EIWN VFMQFE+   Q    L + S+DTGMGLERMA V+
Sbjct: 212 IGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERSTMQP---LHRPSVDTGMGLERMAMVM 268

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   + Y+ DLF  LI+    + G         +  +R + DH R+ +FLIADG+LP N 
Sbjct: 269 QGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADGVLPGNT 328

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GR YVLRRI+RRA+   R +G+ +P +  ++ A+  +MG+ YPEL +    I ET+  E+
Sbjct: 329 GRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILETVDLEE 388

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
            +F +TL  G+ +L+ V+  +      ++ GD AF L DT+G PLD+ Q I    GL  +
Sbjct: 389 RQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT-V 447

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   + + +EEQR R R  +         ++W  +      T+F GY  + GS       
Sbjct: 448 DEAGYERRMEEQRDRGR-RAAQFKRAAEAEVWAGID--LPPTRFTGYAAVSGS------- 497

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            +V+AIV  G+ V EA +GQ+V++  D TPFYAE+GGQ+GDTG 
Sbjct: 498 ----------------GVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQVGDTGV 541

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            IG   R+++ DVQ+   G+ VH+ +VE G +     +   +D   R  +  NH+ATHLL
Sbjct: 542 LIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNHTATHLL 601

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG H +Q GS + PD LRFD TH++P+T  +L  IE  VN  I  + PVV + 
Sbjct: 602 HRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADTPVVWQE 661

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV---------------EYEDGG--VHSSALCGG 696
           ++ + AI +GA AL G KY D VR+V++               E E  G  + S  LCGG
Sbjct: 662 LSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCSRELCGG 721

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV  +GEI L  I+SESS+ AG+RRIEA+TG  A + +  Q   L+++A+ +   Q  +
Sbjct: 722 THVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVGAPQTQL 781

Query: 757 VGRVEEIWEEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKS 811
           V RVE +  E ++ Q        R  + N+E L  S   + D+ F++  +   ++  L+ 
Sbjct: 782 VERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPNAARLRE 841

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGG 870
           + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ GG GGG
Sbjct: 842 MGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV-GGSGGG 899

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           RP MAQ+GG +  K  QA+  VA+ +
Sbjct: 900 RPDMAQAGGRDSAKIPQALEHVAAVI 925


>gi|26991160|ref|NP_746585.1| alanyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|37999403|sp|Q88EI8|SYA_PSEPK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24986204|gb|AAN70049.1|AE016644_3 alanyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 874

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT+F+GY             
Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T G   I+ A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDTG 
Sbjct: 460 ---------DATEGQGKII-ALYKDGQSVDQLGEGEEGVVVLDRTPFYAESGGQVGDTGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVTSGALVIGSPVEAKVDADVQHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T +
Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|312962605|ref|ZP_07777095.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283185|gb|EFQ61776.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 872

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/890 (44%), Positives = 533/890 (59%), Gaps = 57/890 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   T+ 
Sbjct: 4   AEIREAFLRFFEEQGHTRVSSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT    L + +
Sbjct: 64  QKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY  D+EA+ +W +  G+  +++IRI  N       DNFW+M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++ V
Sbjct: 184 DHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERISAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+IDLF +L+ AS    G   E  + +  +V+ DH+RS  FLIADG+LP+NEG
Sbjct: 244 MQHVHSNYEIDLFTNLLSASAAAIGCANESQSSL--KVVSDHIRSCGFLIADGVLPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA  +   LG T      ++ AL  EMG A+PEL Q +  IE  L++E+E
Sbjct: 302 RGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGDAFPELKQQQGNIERVLKAEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F KTL+ GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L  ID  
Sbjct: 362 QFSKTLEHGLKILEQDLAEL-KGTVVPGDVVFKLYDTYGFPMDLTADIARERELT-IDEA 419

Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F + +E QR RAR A S GL   T  K+         AT+F GY    G          
Sbjct: 420 GFEREMEAQRVRARSASSFGLDYNTLVKVDV-------ATEFTGYKATVG---------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+ + A+ + G+ V+    G +  VV +QTPFYAE+GGQ+GD G   
Sbjct: 463 -------------SAKIVALYKDGKSVDVLNEGDEAVVVLNQTPFYAESGGQVGDCGFLS 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R ++ D  K   G F+HH ++  G L     +   +D   R   ++NHSATHLLH 
Sbjct: 510 STSGRFEVRDTTKTG-GAFLHHGVLVLGNLTIGAPVDTQVDADVRHATALNHSATHLLHA 568

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +    LRFD +H + I  A++K++ED VN  I +N  V T   +
Sbjct: 569 ALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIPPAQIKALEDIVNAEIRKNTAVQTEETD 628

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+SES 
Sbjct: 629 IETAKAKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISESG 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQ 771
           + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R    +L+
Sbjct: 685 VASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQLE 744

Query: 772 LIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + AK       +DLS     + DV  ++  +   D K L +++D L+ K+   +I+L G
Sbjct: 745 QLQAKAASAAG-DDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL-G 802

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
              E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 803 SVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 851


>gi|242280583|ref|YP_002992712.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|242123477|gb|ACS81173.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 880

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/902 (42%), Positives = 537/902 (59%), Gaps = 48/902 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL++F+KNGH ++ SSSL+P +DPTL+FTN+GMV FKN F GQEK  Y   TT
Sbjct: 3   ASEIREKFLKYFEKNGHTIVDSSSLVPKDDPTLLFTNAGMVQFKNTFLGQEKRDYVRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  L + 
Sbjct: 63  SQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFCWGFLTEELGLPKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           +LY+T+Y +D+EA +LW+K+    A++I R+   DNFWSM +TGPCGPCSE+  DQGE  
Sbjct: 123 KLYVTIYTDDDEADELWQKVVNFPAERIYRLGEKDNFWSMGDTGPCGPCSEVHIDQGEDM 182

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            C P    G   + +RY+EIWNLVFMQ++Q  +  R  LP+ SIDTGMGLER+  V Q  
Sbjct: 183 SCGPNCGIGKC-DCDRYLEIWNLVFMQYDQDEEGNRVPLPRPSIDTGMGLERITAVCQGV 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            +N++ D+F+ +IQA  +  G+KY+ ++ ++   +VI DH RS +FLI D ILP+NEGRG
Sbjct: 242 QSNFETDIFQPMIQAVAKKAGVKYKEDSEIDTALQVIADHSRSIAFLITDQILPSNEGRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG T+P +      +  +M   +PEL+  K  +   ++ E+ERF
Sbjct: 302 YVLRRLIRRAFRFGRLLGLTDPFLHETTAMVVEQMSGQFPELLDNKDFMARMVKEEEERF 361

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD+GL++L+  +  L K    +++G+ AFKLYDT+G PLDI+ D+   +    +D  
Sbjct: 362 SQTLDKGLIILEEEMEELKKAGKNLISGETAFKLYDTYGFPLDIINDVAEKQEFE-VDED 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN A++EQ+ RA+A   G G   +  I+  + E      F GY     S+   E R   
Sbjct: 421 GFNAAMKEQKDRAKAAWKGSGEKNSGAIFRQVLEAGLKNSFTGY-----SELTTESR--- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                         IV  + ++GE +E    G    ++   TPFY E+GGQ+GDTG    
Sbjct: 473 --------------IVNLLSEEGEHLERITQGNGGWIITAATPFYGESGGQMGDTGAVGT 518

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ +  K +  +      V  G L  E    L +  + R     NH+ THLLH A
Sbjct: 519 LTGNAEVLETVKASADLTASKVFVSEGELLLEQEAKLEVSPETRVATERNHTVTHLLHAA 578

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q+GS + PD LRFD TH   +T  E+  +E+ VN  I  + PVV + M+ 
Sbjct: 579 LKKVLGDHVKQSGSLVGPDRLRFDFTHIAAMTPEEIGEVENEVNRAILGDTPVVVQEMSN 638

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV +  E     S  LCGGTH+ +TGE     I SES +
Sbjct: 639 DEAAAKGATALFGEKYGDVVRVVEIPGE-----SMELCGGTHLKATGEAGTFVIQSESGV 693

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA TG  +   L  Q  ++ + ++ LK + G +  R+  +  + +  +L  A 
Sbjct: 694 AAGIRRIEAATGWNSLKFLQEQRAEVVTSSAMLKAAPGQLADRIAALQSQVK--ELTKAN 751

Query: 777 RKLQLNV-----EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            KLQ  +      DL  S  +I  V  ++  +   + K L+   DAL+ K+ SGI  LV 
Sbjct: 752 DKLQSKLASGAGADLMSSIEEIGGVKVLAAKLEVTNVKALRDQADALRSKMDSGIFCLVA 811

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K S++I VT+DL DRF A  L + ++A+V   GGGGGRP MAQ+GG N    ++A
Sbjct: 812 QVDDNKVSLIIAVTKDLHDRFQAGALIKPVAAEVG--GGGGGRPDMAQAGGTNPAGIEKA 869

Query: 889 IA 890
            A
Sbjct: 870 FA 871


>gi|312171401|emb|CBX79660.1| Alanyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 833

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/870 (44%), Positives = 528/870 (60%), Gaps = 58/870 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F GQ+K  Y    + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGQDKRNYTRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AI  AW+LLT    F L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N   
Sbjct: 61  KHEAIAFAWELLTSSQWFGLPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGS 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPCSEIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF ++ 
Sbjct: 121 AYASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRKA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+  VLQ   +NY+IDLF  LIQ+  QVTG     N  +  
Sbjct: 181 DGTMLPLPKPSVDTGMGLERITAVLQHVNSNYEIDLFAQLIQSVAQVTGATDLSNKSL-- 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG        LL  L   
Sbjct: 239 RVIADHIRSCAFLIADGVIPSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLLAPLIAV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG+A  +L   +  +E+ LR+E+E+F KTL+RGL LLD  L +L  D +L+G+  F+LYD
Sbjct: 299 MGAAGDDLKSQQSQVEQVLRTEEEQFAKTLERGLALLDEELENLQGD-MLDGETVFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T G P+D+  D+   R L  ID   F +A+E+QR RAR  S G GS     I        
Sbjct: 358 TFGFPVDLTADVCRERNLK-IDEAGFERAMEQQRQRARDAS-GFGSDYNNVIRIDQ---- 411

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GY  L+                       +++ + AI   G+      +GQ+  
Sbjct: 412 -ASEFKGYQQLQ-----------------------LNAAISAIFVDGQAANTISAGQEGV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D TPFYAE+GGQ+GDTG   G+     +++ QK A+ I  H   +  G LR    + 
Sbjct: 448 IVLDATPFYAESGGQVGDTGKLQGNSASFIVSNTQKYAQAIG-HSGKLAIGELRVGDCVA 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHLLH AL  +LG HVSQ GS +    LRFD +H + +T  E 
Sbjct: 507 AQVDEARRARIRLNHSATHLLHAALRQVLGQHVSQKGSLVNDTYLRFDFSHFEAMTPQET 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + +E+ VN  I +NLP+ T IM  E A A GA AL G KY+D VRV+S+     G  S+ 
Sbjct: 567 RQVEEIVNAQIRRNLPIETNIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I SES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +
Sbjct: 622 LCGGTHASRTGDIGLFRITSESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKAN 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSK 807
             N+  +V  + +  R L+    + K Q   ++   LS   IA      +   +S+V+ K
Sbjct: 682 HSNLNEKVRALIDHARALEKQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGG 866
            L++++D L+ ++ S II+L  ++ + K S++  VT+DL DR  A +L   L+ KV  GG
Sbjct: 742 MLRTMVDDLKNQLGSAIIVLATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV--GG 798

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GGGRP MAQ+GG +      A+AGV S++
Sbjct: 799 KGGGRPDMAQAGGTDAMALPAALAGVESWV 828


>gi|313497736|gb|ADR59102.1| AlaS [Pseudomonas putida BIRD-1]
          Length = 874

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT+F+GY             
Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T G   I+ A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------DATEGQGKII-ALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T +
Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|197124228|ref|YP_002136179.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|196174077|gb|ACG75050.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 905

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/933 (40%), Positives = 545/933 (58%), Gaps = 72/933 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F  +F+++GH  + S+SL+P NDPTL+FTN+GMV FK++FTG+E+  Y   T
Sbjct: 5   TAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T      +
Sbjct: 65  TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPAWLGI 124

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            + RL  TV+        DEEAF+LWK   G+  ++I ++   DNFW+M +TGPCGPCSE
Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELWK-AQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGG--LPGSSEEG-----ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           + + QG  IP    L G   +G     +R++EIWNLVFMQFE+        LPK SIDTG
Sbjct: 184 LHYFQGNDIPCAEELAGRRCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
            GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+   ++ V+ RVI DH R+++FL
Sbjct: 244 AGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARATTFL 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+LP+NEGRGYVLRRIMRRA+ + R LG  +P +  +  A+  EMG AYPE  + + 
Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGRRLGLEKPFLAAVCGAVIDEMGGAYPETRENRA 363

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDVAFK 389
            IE+  + E+E F +TLD+GL +L+G +  L  D                 I++G VAF+
Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGKVAFQ 423

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT G PLD+ + I   RG   +D   F++ + EQR  AR+   G G    + +   + 
Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQR--ARSEWKGSGEQGVDDLHKQIA 480

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
            + G  +F+GY                 ++P         + VKAI+  G  V  A  G 
Sbjct: 481 GELGEVKFLGY-----------------EQP------AARAQVKAILANGARVARAGKGD 517

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +    
Sbjct: 518 KVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L +D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +P+T 
Sbjct: 578 AVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            EL ++E  VND++ +N    T ++  E+A  +GA  + G KY D VRVV +        
Sbjct: 638 EELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIG------P 691

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  A+ L
Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751

Query: 750 KVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--D 805
           K     V  ++++     + L+  L  A+ K              DV     + + V  D
Sbjct: 752 KAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAARVDGD 811

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +AK++ G
Sbjct: 812 GKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAAKLV-G 869

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G GGG+P MAQ+GG +    ++A+  VA    +
Sbjct: 870 GSGGGKPDMAQAGGSDPAGLEKALEKVAELATR 902


>gi|146328813|ref|YP_001209206.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|205830079|sp|A5EW88|SYA_DICNV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146232283|gb|ABQ13261.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 873

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/896 (41%), Positives = 535/896 (59%), Gaps = 62/896 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL +F +NGH+++ S+SL+P NDPTL+FTN+GMVPFK +F G E   Y+  T
Sbjct: 5   TTAEIRRAFLNYFSENGHKIVHSASLVPGNDPTLLFTNAGMVPFKELFIGTETRDYRRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+   L  
Sbjct: 65  SAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWRFLTEVLQLPA 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            +L +TVY ED+EA+++W++  GL AD+IIRI          +DNFW+M +TGPCGPC+E
Sbjct: 125 EKLLVTVYHEDDEAYRIWQEKIGLPADRIIRIGDKAGKAKYESDNFWAMGDTGPCGPCTE 184

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS+ E+G+R+IEIWN+VFMQFE+  +     LPK SIDTGMGLER+
Sbjct: 185 IFYDHGAEIFGGRPGSADEDGDRFIEIWNIVFMQFERDAEGTMKPLPKPSIDTGMGLERI 244

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NYDIDLF HLI A+ +  G K EG    + +VI DH+R++ FL+ DG+LP+
Sbjct: 245 AAVMQGVHSNYDIDLFIHLIDAAAKAVGCKNEGQ--ASLKVIADHIRATVFLMVDGVLPS 302

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRIMRRA+ +   LG        L+ AL  EMG AYPE+I  +  I ET+R 
Sbjct: 303 NEGRGYVLRRIMRRAIRHGYKLGQQGLFFHKLVAALVAEMGEAYPEIIAEQARITETIRK 362

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL  G+ +L+  L+ L K  I++G+  FKLYDT+G P+D+  DI   RGL  +
Sbjct: 363 EELRFAQTLTAGMQILEQDLATL-KGTIISGETVFKLYDTYGFPVDLTNDIARERGLT-L 420

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLLRGSKFMK 470
           D   +   ++ QR RA+A      SGT     F   + Y   G T F+ Y          
Sbjct: 421 DEAGYEALMQAQRERAKA------SGT-----FRADKTYTVSGKTAFLAYQ--------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S ++AI  Q +  +    G +  +V +Q+PFY E+GGQ+GD
Sbjct: 461 --------------QEQTESTIEAIFVQEQAADTLDCGDEAVLVLNQSPFYGESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          ++D QK+ + + +H   ++RG+L    ++   ID   R  +  +HSAT
Sbjct: 507 SGVIYHQNGAFLVSDTQKQGD-VLLHFGRLQRGVLSVGDTVCAEIDRARRAAIRRHHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL   LG+HV Q GS +  D LRFD +H   +T+AE+ ++E  +N+ I +N PV 
Sbjct: 566 HLLHQALRMTLGTHVQQKGSLVDADKLRFDFSHDAALTAAEIGAVEQLINEQILRNQPVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  + A A GA AL G KY D VRVV +  +D    S  LCGGTHV  TG++ L+ I
Sbjct: 626 ISEMPYDQACAQGAMALFGEKYGDIVRVVKMGADD---FSVELCGGTHVKQTGDLGLVKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +++S++ AGIRR+E + G  A  +   Q+ +L+ +A+ LK    + V ++E + ++ + L
Sbjct: 683 IAQSAVAAGIRRVECVAGLAALRYCQQQETQLQRIAAVLKSDLEHSVEKIERLQQDTKTL 742

Query: 771 Q--LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  +   KR + L     +   + D++    M+    ++D+  L+   D L+ K Q  ++
Sbjct: 743 EKTVQQLKRTVALGGTQETAESVVDIHGWKTMAVRRDDLDNAILRDTADQLRDKYQLDVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            ++G S  + A +++ V +          +  L+A +   G GGGRP  AQ+GG N
Sbjct: 803 -VIGSSDGEMARLVVSVAKSAAALKAGAIVQTLAAFI--DGKGGGRPDFAQAGGKN 855


>gi|270264045|ref|ZP_06192313.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270042238|gb|EFA15334.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 839

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/876 (43%), Positives = 546/876 (62%), Gaps = 56/876 (6%)

Query: 36  LMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95
           ++FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGN
Sbjct: 1   MLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN 60

Query: 96  FSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIR 153
           FSFG YFK  AI  AW+LLT E  F+L + RL++TVY+ D+EAF +W+K  G+ A++IIR
Sbjct: 61  FSFGDYFKHDAISYAWELLTGENWFNLPKERLWVTVYETDDEAFDIWQKQIGVPAERIIR 120

Query: 154 ITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVF 205
           I  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS+EE G+RYIEIWN+VF
Sbjct: 121 IGDNKGAAFASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVF 180

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
           MQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF  LI A  +VTG    
Sbjct: 181 MQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFSKLITAVAKVTGAVDL 240

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
            N  +  RVI DH+RS +FL++DG++P++EGRGYVLRRI+RRA+ +  +LG  E     L
Sbjct: 241 DNKSL--RVIADHIRSCAFLVSDGVMPSSEGRGYVLRRIIRRAIRHGNMLGAKESFFYKL 298

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           +  L   MG A  EL + + L+E+ L++E+++F +TL+RGL LLD  L++L  D  L+G+
Sbjct: 299 VAPLIEVMGPAADELKRQQSLVEKVLKTEEDQFARTLERGLALLDEELANLQGD-TLDGE 357

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF+LYDT+G P+D+  D+   RGL  +D   F QA+E QR RAR  S G G+      +
Sbjct: 358 AAFRLYDTYGFPVDLTADVCRERGLK-VDEAGFEQAMEAQRRRARESS-GFGAD-----Y 410

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
            S+    GA+QF GYD         E+++               + V A+ + G+ V+E 
Sbjct: 411 NSMIRVDGASQFSGYD--------HEEQQ---------------ATVTALFRDGQPVDEI 447

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G++  VV D+TPFY E+GGQ+GD G     G    ++D QK  + I  H   +  G+L
Sbjct: 448 HVGEEAVVVLDETPFYGESGGQVGDKGVLKTAGADFVVSDTQKYGQAIG-HQGKLSHGVL 506

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           + +  +   ID   R ++ +NHSATHLLH AL   LG HV+Q GS +    LRFD +H +
Sbjct: 507 KVKDRVDAQIDIARRNRIRLNHSATHLLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFE 566

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   +++ +ED VN  + +NLPV T +M  +DA   GA AL G KY+D VRV+++    
Sbjct: 567 AMKPEQIRVVEDLVNQQVRRNLPVQTEVMALDDAKEKGAMALFGEKYDDSVRVLTM---- 622

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G  S+ LCGGTH S TG+I L  I++ES   AGIRRIEA+TG+ A + L  Q++ L+ +
Sbjct: 623 -GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIATLHQQNDLLQDV 681

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHI 800
           A  +K    N+  +V  + +  R L+    + K Q   ++ +       K+  V  +   
Sbjct: 682 AQLVKGDNSNLTDKVRAVLDRTRALEKELQQLKDQQAAQESASLSSQAKKVNGVQLLVSQ 741

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +  V++K L++++D L+ ++ S II+L   + + K S++  VT+DL DR  A +L    A
Sbjct: 742 LDNVEAKMLRTMVDDLKNQLGSAIIVLA-TTADDKVSLIAGVTKDLTDRVKAGELIGHVA 800

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + + GG GGGRP MAQ+GG + +    A+  V +++
Sbjct: 801 QQV-GGKGGGRPDMAQAGGTDVSALPAALNSVEAWV 835


>gi|148546681|ref|YP_001266783.1| alanyl-tRNA synthetase [Pseudomonas putida F1]
 gi|148510739|gb|ABQ77599.1| alanyl-tRNA synthetase [Pseudomonas putida F1]
          Length = 897

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 27  AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 86

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 87  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 146

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 147 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 206

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 207 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 266

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 267 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 324

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 325 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 384

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 385 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 442

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT+F+GY             
Sbjct: 443 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 482

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T G   I+ A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+G 
Sbjct: 483 ---------DTTEGQGKII-ALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDSGF 532

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 533 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATHLL 591

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T +
Sbjct: 592 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 651

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 652 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 707

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 708 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 767

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 768 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 826

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 827 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 876


>gi|225848695|ref|YP_002728858.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644297|gb|ACN99347.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 875

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/899 (41%), Positives = 547/899 (60%), Gaps = 41/899 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+   + QK
Sbjct: 9   IRESFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRAASCQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+  WD LT    + Q +L 
Sbjct: 69  VFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFTWDYLTNYLKIPQEKLL 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V++ED+EAF++W K+ GL  +KI R+   DNFWSM +TGPCGP SEI++D+GE   G 
Sbjct: 129 VSVFEEDDEAFEIWNKVIGLPEEKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGEKF-GN 187

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
               S+E  RY+EIWNLVFMQ+ +        LP  SIDTGMGLER+A+V+Q+  +NYD 
Sbjct: 188 PEFGSDEDFRYLEIWNLVFMQYNRDESGNLTPLPNPSIDTGMGLERIASVIQQVDSNYDT 247

Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           DLFK +I+ +E++ G  Y  N  + V  RVI DHLR+ +FLI+DG+LP+NEGRGYVLRRI
Sbjct: 248 DLFKPIIRFAEEIAGKTYGKNEKDDVAMRVIADHLRAITFLISDGVLPSNEGRGYVLRRI 307

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ Y R LG   P +   +  +  +M +AYPEL+  +  I++  +SE+E+F KTL R
Sbjct: 308 LRRALRYGRNLGIDRPFLYEGVDVVIDKMKNAYPELVPNRNYIKKITKSEEEKFIKTLRR 367

Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
            + +L  ++    K+  + L G+  FKLYDT+G P+D++QDIL    +   +I  F + +
Sbjct: 368 SMDILYQMIETAKKEGRKFLTGEEVFKLYDTYGFPIDLLQDILRDESMT-FNIKEFEELI 426

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQ+ R+R  +    +   + I+  LK +    +FIGY+ L     + E  KVL      
Sbjct: 427 LEQKERSR-KAFKTTAKQVKPIYLQLKSRLPENEFIGYNTL-----ISESSKVL------ 474

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                      AIV++ + V +A  G++VE++ D TPFY E GGQ+GD G   G+    +
Sbjct: 475 -----------AIVKEDQTVSQAKEGEEVEIILDITPFYPEKGGQVGDRGVIEGENFLAE 523

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D Q   EG+ +H   +  G ++    +   +D + R  +  +H+ATHLLH AL  ILG
Sbjct: 524 VIDTQTPTEGLILHKVKILFGTVKEGEFVRAKVDKERRENIMRHHTATHLLHSALRNILG 583

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS ++ + LRFD TH + ++  E+K IE+ VN  I +N  VV + M+ E+A+ S
Sbjct: 584 DHVKQAGSLVSDEYLRFDFTHFESLSDEEIKMIEEFVNREIMKNEEVVCQEMSYEEALNS 643

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY D VRV+S      GV S  LCGGTHV  TG+I    I+SE ++ +G RR
Sbjct: 644 GAIAIFEEKYGDVVRVIS-----AGV-SKELCGGTHVKRTGDIGYFKILSEYAVSSGTRR 697

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRK 778
           IEA+ G RA    + +   LK L+  L V +  ++ RV     ++ E+ R+L+ +  K  
Sbjct: 698 IEAVAGIRAVEQGLKEHFLLKDLSRLLTVKEDELIDRVVKLQNQLKEKERELENLKKKAA 757

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KAS 837
           L    + L+  +  D       I  V   EL+ + D +++K+   +++LV   KEK K +
Sbjct: 758 LDKLNQTLNIIEKEDYKVAYGEIENVSPNELREIADNIKQKLGKAVVLLVSKDKEKSKVN 817

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ +V++DL DR+ A ++ +  A ++  G GGG+P  AQ GG N  K  Q +    +F+
Sbjct: 818 IVALVSKDLTDRYKASEILKKLAPIV-EGSGGGKPDFAQGGGTNLEKVPQLLQEFKNFI 875


>gi|205830257|sp|A5W0D9|SYA_PSEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT+F+GY             
Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T G   I+ A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------DTTEGQGKII-ALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDSGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV T +
Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|88813103|ref|ZP_01128344.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88789587|gb|EAR20713.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 869

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/902 (42%), Positives = 547/902 (60%), Gaps = 51/902 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F+ N HE++PSSSL+P NDPTL+FTN+GMV FK  F G E+  Y    + 
Sbjct: 8   AEIRQAFLDYFRANDHEIVPSSSLVPTNDPTLLFTNAGMVQFKETFLGHERRPYSRAASA 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L  +R
Sbjct: 68  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLQLPPQR 127

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV++ED+EA  +W +  G++ ++  RI  +DNFW+M +TGPCGPCSEIF+D G  + 
Sbjct: 128 LWVTVFEEDDEAANIWLEEIGVAPERFARIGAHDNFWAMGDTGPCGPCSEIFYDHGPEVA 187

Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS++ +G+R++EIWNLVFMQ+++        LP+  +DTGMGLER+A V+Q   NN
Sbjct: 188 GGPPGSAQADGDRFVEIWNLVFMQYDRDEHGRLSALPRPCVDTGMGLERIAAVVQGMHNN 247

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           ++IDLF HL+ ++ +V G     NN +  RVI DH+R+ +FLI DG+ P NEGRGYVLRR
Sbjct: 248 FEIDLFHHLVHSAARVAGSADLSNNSL--RVIADHIRACAFLIVDGVFPGNEGRGYVLRR 305

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  E     L+  L  +MG+AYP L Q +   E  L+ E+ERF +TL+
Sbjct: 306 IIRRAIRHGYKLGIEEAFFYRLVSPLVEKMGAAYPALEQGRAQAERILKQEEERFRETLE 365

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +GL LL+G L  L + + + G   FKLYDT+G P+D+  DI   RGL G+D+  F QA+ 
Sbjct: 366 QGLKLLEGDLRRL-ESQTIPGATIFKLYDTYGFPVDLTGDIARERGL-GLDMPGFEQAMA 423

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            QR RARA S         K+ +     + G T+F GYD L+                  
Sbjct: 424 AQRERARAAS-------AFKVDYKETGDFEGHTEFTGYDHLQD----------------- 459

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                   +V A+  +G       +G++  V+ D+TPFYAE+GGQ+GD G  +   +  +
Sbjct: 460 ------QGLVTALYAEGRRRNHLEAGEQGMVLLDRTPFYAESGGQVGDRGWLLASELEFE 513

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D   K  G F H  +V +G L     +   +D + R+   +NHSATHLLH AL  +LG
Sbjct: 514 VWDT-VKYRGAFGHVGVVRQGRLAAGERVSTRVDAERRQATVLNHSATHLLHAALRRVLG 572

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H  Q GS + PD LRFD TH +P++  +L+ +E  VND I  N     R M+ ++A+  
Sbjct: 573 EHAQQKGSLVAPDRLRFDFTHFEPVSREQLERVERLVNDRIRANDVADVRYMSYDEAMDF 632

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRV+       G  S+ LCGGTHV  TG+I    +VSE+ I AGIRR
Sbjct: 633 GAVALFGEKYADTVRVMRF-----GEFSTELCGGTHVRRTGDIGFFKLVSETGISAGIRR 687

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL- 781
           IEAITGQ A +       +L  +   L+ S  N+  R+E++ +  R+L+   A+++ +L 
Sbjct: 688 IEAITGQCAVAWAETVSRQLAHVGELLRCSSDNIELRLEQLIDRSRQLEKELARQQQKLA 747

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                N+ D +   I  V  ++  +   D++ L+  +D L+ K+ S +++L  +  E K 
Sbjct: 748 SQAGTNLADRAV-LIDGVKVLATTVEGGDNRALRDTLDQLKHKLGSAVVVLASVDGE-KV 805

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++  VT+D  DR  A +L    A  + GG GGGR   AQ+GG +  + DQA+  VA+++
Sbjct: 806 RLVGGVTKDFTDRLKAGELINAVASQI-GGRGGGRADFAQAGGSDPTQLDQALESVAAWV 864

Query: 897 KK 898
           ++
Sbjct: 865 RE 866


>gi|119505423|ref|ZP_01627496.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma
           proteobacterium HTCC2080]
 gi|119458701|gb|EAW39803.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma
           proteobacterium HTCC2080]
          Length = 866

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/900 (42%), Positives = 541/900 (60%), Gaps = 48/900 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL +F++ GH  + SSSL+P +DPTL+FTN+GM  FK  F G E   YQ   T
Sbjct: 3   TAEIREAFLSYFEEQGHTRVESSSLVPHDDPTLLFTNAGMNQFKETFLGLETRAYQRACT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+  +L + 
Sbjct: 63  SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTEVLELPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++TV+  D+EA  +W    G+    + R+   DNFW M +TGPCGP SEIF+D G  +
Sbjct: 123 RLWVTVHISDDEAAAIWIDEIGIDPSCLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGAHV 181

Query: 184 PGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           PGG PGS+++  +RYIEIWNLVFMQF +    E   LP  S+DTGMGLER+A VLQ   +
Sbjct: 182 PGGPPGSADDDLDRYIEIWNLVFMQFNRDGAGELHPLPAPSVDTGMGLERIAAVLQHVHS 241

Query: 243 NYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NY+IDLF+ LI+A+     +   E  ++   RVI DHLRS +FLI DG++P+NEGRGYVL
Sbjct: 242 NYEIDLFQTLIKATASALAVADLEEKSL---RVISDHLRSCAFLITDGVVPSNEGRGYVL 298

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG T+P    L+P L  EMG+AYP+L  ++  I + LR+E+++F +T
Sbjct: 299 RRIIRRAVRHGNKLGATKPFFAALVPVLVAEMGAAYPDLQASESAIVKALRAEEDQFART 358

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           LD G+ +L+  LS L +  +L G++ F+LYDT+G P+D+  DI   R L  +D+  +++A
Sbjct: 359 LDNGMAILEEALSGL-QGAVLPGELVFRLYDTYGFPVDLTNDIARERNLT-LDVEGYDEA 416

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + +QR R++       SG+ +  +       G TQF GYD   G                
Sbjct: 417 MAQQRKRSQE------SGSFKVDYNESVTIPGETQFTGYDSTEG---------------- 454

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  S  + A++ +GE+ +   +G++  VV + TPFY E+GGQ+GD G   G+  R 
Sbjct: 455 -------SGTILALLAEGEMAQSLAAGERGVVVLNSTPFYGESGGQVGDCGLLQGESSRA 507

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD   KA+G   HH  V  G L     L  T+D + R+++ +NHSATHLLH AL  +L
Sbjct: 508 DVTDT-TKAQGHHFHHVHVTSGSLNVGDVLAATVDNELRQRIRLNHSATHLLHEALRRVL 566

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS +  + LRFD +H + +++A++  +   VN+ I  N    T++M+ + A+A
Sbjct: 567 GDHVVQKGSLVDSERLRFDFSHGEAVSAAQIDELTQIVNEQIRGNSATTTQLMDMDSAVA 626

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA AL G KY D VRV+S+  E   V    LCGGTHV  TG+I LL +  ES + AG+R
Sbjct: 627 AGATALFGEKYGDEVRVLSMGSEGFSVE---LCGGTHVDRTGDIGLLLVTGESGVAAGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEAITGQ A    +   +++  +A  LK +   VV +   +  E R+L+   A+ K +L
Sbjct: 684 RIEAITGQAALVQSLASSQRVVDVAEVLKATPAAVVEKAGVLRSEVRELEKEVARLKQKL 743

Query: 782 NVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                 DL  S  ++  +  ++  I   D   L+  +D  + K+ + +++L  +  + K 
Sbjct: 744 ATSSGGDLTQSAVEVGGIKVLATQIEGADVATLRDTLDQCKNKLGTAVVLLAAVEGD-KI 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S++  VT+D+ DR  A D  +  A  L GG GGGRP MAQ GG +      A+A V  ++
Sbjct: 803 SLVAGVTKDVTDRVRAGDAIKEFAGRL-GGKGGGRPDMAQGGGTDVAGLPAALAAVPDWV 861


>gi|220919010|ref|YP_002494314.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956864|gb|ACL67248.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 905

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/933 (40%), Positives = 545/933 (58%), Gaps = 72/933 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F  +F+++GH  + S+SL+P NDPTL+FTN+GMV FK++FTG+E+  Y   T
Sbjct: 5   TAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T      +
Sbjct: 65  TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPAWLGI 124

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            + RL  TV+        DEEAF+LWK   G+  ++I ++   DNFW+M +TGPCGPCSE
Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELWK-AQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGG--LPGSSEEG-----ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           + + QG  IP    L G   +G     +R++EIWNLVFMQFE+        LPK SIDTG
Sbjct: 184 LHYFQGNDIPCAEELAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
            GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+   ++ V+ RVI DH R+++FL
Sbjct: 244 AGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARATTFL 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+LP+NEGRGYVLRRIMRRA+ + + LG  +P +  +  A+  EMG AYPE  + + 
Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLEKPFLAAVCGAVIDEMGGAYPETRENRA 363

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDVAFK 389
            IE+  + E+E F +TLD+GL +L+G +  L  D                 I++G VAF+
Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGKVAFQ 423

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT G PLD+ + I   RG   +D   F++ + EQR  AR+   G G    + +   + 
Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQR--ARSEWKGSGEQGVDDLHKQIA 480

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
            + G  +F+GY                 ++P         + VKAI+  G  V  A  G 
Sbjct: 481 RELGEVKFLGY-----------------EQP------AARAQVKAILANGARVARAGKGD 517

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +    
Sbjct: 518 KVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L +D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +P+T 
Sbjct: 578 AVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            EL ++E  VND++ +N    T ++  E+A  +GA  + G KY D VRVV +        
Sbjct: 638 EELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIG------P 691

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  A+ L
Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751

Query: 750 KVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--D 805
           K     V  ++++     + L+  L  A+ K              DV     + + V  D
Sbjct: 752 KAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAARVDGD 811

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +AK++ G
Sbjct: 812 GKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAAKLV-G 869

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G GGG+P MAQ+GG +    ++A+  VA    +
Sbjct: 870 GSGGGKPDMAQAGGSDPAGLEKALEKVAELATR 902


>gi|104782873|ref|YP_609371.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|122402439|sp|Q1I6Z8|SYA_PSEE4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|95111860|emb|CAK16584.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 874

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/910 (42%), Positives = 544/910 (59%), Gaps = 57/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWNFLTSDKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W +  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYASDDEAYDIWTQEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            V+Q   +NY+IDLF+ L+ A+ +  G   +    +  +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVMQHVHSNYEIDLFQSLLAAAAEAIGCSNDEQPSL--KVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL TEMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFHKIVAALVTEMGEAFPELKGQQAHIERVLKTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L + +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-QGKVVPGDVVFKLYDTYGFPMDLTGDIARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A + G+        + SL +   AT F+GYD   G        
Sbjct: 420 EAGFEREMEAQRERARSASAFGMD-------YNSLVKVDTATDFLGYDTTEG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+ + G+ VE+   G++  VV D+TPFYAE+GGQ+GD+G 
Sbjct: 465 ---------------QGKVIALYKDGQSVEQLTEGEEGVVVLDRTPFYAESGGQVGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH ++  G L    ++   +D   +   S+NHSATHLL
Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVIASGALTVGATVDARVDADVQHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   ++K++ED VN  + +N  V T +
Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKALEDIVNREVRRNTEVQTEL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEAITG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 685 GGVASGVRRIEAITGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G   E K  ++  VT+DL  +  A DL +  A  + GG GGGRP MAQ GG +    DQA
Sbjct: 804 GSEHEGKVVLVAGVTKDLSGQLKAGDLMK-QAAAVVGGKGGGRPDMAQGGGVDVASLDQA 862

Query: 889 IAGVASFLKK 898
           +A    F ++
Sbjct: 863 LALAVPFAEQ 872


>gi|254805364|ref|YP_003083585.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668906|emb|CBA07085.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 885

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/902 (42%), Positives = 533/902 (59%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRTRARA-------AQSFKANAQLPYDGQDTEFKGY----------SER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G +  +V D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDEGAIVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NK 884
            K
Sbjct: 867 GK 868


>gi|326317055|ref|YP_004234727.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373891|gb|ADX46160.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 876

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/908 (42%), Positives = 538/908 (59%), Gaps = 56/908 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           S+V+ IR +FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 8   SSVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L 
Sbjct: 68  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYGLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSE
Sbjct: 128 KERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  IPGG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+
Sbjct: 188 IFYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF  LIQA+ + TG     N  +  +VI DH+R+++FL++DG++P+
Sbjct: 248 AAILQHVHSNYEIDLFAALIQAAGRETGTADLANPSL--KVIADHIRATAFLVSDGVIPS 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E L++
Sbjct: 306 NEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVKDLVQQMGDAYPKLREQEQRITEVLKA 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +
Sbjct: 366 EEERFFETLANGMDILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGVT-V 422

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A++ Q+++ARA     G    +K   +L+    A +F GYD L          
Sbjct: 423 DEDGFNAAMDRQKAQARA----AGKFKMDK---ALEYAGEANRFSGYDGL---------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ + AI   G   +   +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 466 -------------AESAKIVAIYVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGV 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G R  + D  K    ++ HH  +E G LR   ++   +D   R     NHS TH++
Sbjct: 513 IHAGGARFAVDDTLKIRADVYGHHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIM 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  +  RFD  H+ P+T A+++ IE  VN+ I  N P   R+
Sbjct: 573 HKALREVLGSHVQQKGSLVNAERTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARV 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV+ TG+I L  +V E
Sbjct: 633 MDIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVARTGDIGLFKVVGE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S + AG+RRIEA+TG  A ++L   ++ +   A  L+     + GR+ +  ++ + L  +
Sbjct: 687 SGVAAGVRRIEAVTGAGALAYLQQLEDTVAKAAGALRAPASELAGRIGQALDQVKALERE 746

Query: 772 LIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K++S  I+L 
Sbjct: 747 VAALKGKLASSQGDELVGQAVDVKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K  +   VT D++ +  A +L    A  + GG GGG+P MA +GG +      A
Sbjct: 807 AVDG-AKVQIAAGVTPDVMAKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTDAAALPAA 864

Query: 889 IAGVASFL 896
           +A VA ++
Sbjct: 865 LASVAGWV 872


>gi|258592084|emb|CBE68389.1| alanyl-tRNA synthetase [NC10 bacterium 'Dutch sediment']
          Length = 886

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/907 (42%), Positives = 542/907 (59%), Gaps = 48/907 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF++NGH ++ SSSL+P  DPTL+FTN+GMVPFK +F G +   Y+   ++QK
Sbjct: 10  IRERFLRFFERNGHTVVASSSLVPAGDPTLLFTNAGMVPFKGVFLGTDPRPYRRAVSIQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT E +L   RL+
Sbjct: 70  CLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEGAIEYGWAFLTCELELPADRLW 129

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y +D+ A +LW++++GL +D+I+R+   DNFWSM ETGPCGPCSE+ FDQG  I  G
Sbjct: 130 ATIYKDDDAAGELWQRLTGLPSDRIVRLGEKDNFWSMGETGPCGPCSELIFDQGPTIGCG 189

Query: 187 LPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  + E   +RY+E+WNLVFMQF +        LPK SIDTG GLERMA V Q  T+N+
Sbjct: 190 RPTCTIECGCDRYLELWNLVFMQFNRDASGTLTPLPKPSIDTGAGLERMAAVCQGVTSNF 249

Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           + DL + LI   E+++  +Y  +  + ++ RVI DH R+ +F +ADG+LP+NEGRGYVLR
Sbjct: 250 ESDLIRPLIATVEELSQKRYGADEKDDISMRVIADHARAVTFALADGVLPSNEGRGYVLR 309

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ + RLLG  EP +      +   M  AYPEL  ++  +E     E++RFG  L
Sbjct: 310 RILRRALRHGRLLGLDEPFLASTTHRVIDLMTDAYPELPASRAHVERLAWIEEDRFGIVL 369

Query: 363 DRGLV----LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
              L     L++ + S   +  IL G   F+LYDT+G+P D++ +I   + + G D   F
Sbjct: 370 REALPRLHDLIEKIKSQTAEQAILPGSKLFELYDTYGVPRDLIDEIAVEQSV-GCDWNGF 428

Query: 419 NQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
              L  QR  +RAH    G   G  E     +K +   T F+GY+ L             
Sbjct: 429 EIELRHQRETSRAHLKAFGDVQGVAEAFHDLVKTRR--TVFLGYERL------------- 473

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                 DL    +S+V  IV  G  V+    GQ+ EVV DQTPFYAE+GGQ+GD G   G
Sbjct: 474 ------DLE---ASVVAVIV-GGTQVDRMGVGQEGEVVLDQTPFYAESGGQVGDAGYLRG 523

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+  ++ D ++   G+ VH   V+RG  R+   L+ +++   R     NH+ATHL+H A
Sbjct: 524 DGVLAEVLDTKRPLAGLIVHRVRVKRGEFRSGQRLLASVEADRRSTTVKNHTATHLVHAA 583

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS + PD LRFD  H  P++ AE+  IE+ VN  +  N+PVV   M  
Sbjct: 584 LRQILGDHVRQEGSLVAPDRLRFDFRHYGPVSPAEITQIEEMVNAKLWANVPVVVEEMRL 643

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+A GA A  G KY D VRVV V        S  LCGGTH  STGEI LL I  E+ +
Sbjct: 644 DEALAKGALAFFGDKYGDEVRVVGV-----ADFSIELCGGTHTKSTGEIGLLKIAHETGV 698

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQL 772
            AGIRRIEA+TG  A  +L  + E L+  A  LK     V  +VE +++      R++Q 
Sbjct: 699 AAGIRRIEALTGPGAFQYLKREGEVLRESADRLKSKPLEVPEKVERLFDSARAFEREVQR 758

Query: 773 IHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + AK   ++  E L+   +++ V  ++ ++ + D + L+ ++D ++ KI+SG+I+L   S
Sbjct: 759 LRAKLGAEMAEELLNKATRVSGVMVVAGLVEQCDQRALRELVDRVKTKIESGVIVLA-TS 817

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + +   +  VT DL  R +A  L +  A +  GG GGGR  +A++GG N ++ D+A+  
Sbjct: 818 LDGRVGWVAAVTPDLTSRLHAGKLVKEVANIT-GGSGGGRADLAEAGGKNLDELDRALQL 876

Query: 892 VASFLKK 898
           V   +K+
Sbjct: 877 VPELVKQ 883


>gi|238758257|ref|ZP_04619436.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238703587|gb|EEP96125.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 847

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/885 (43%), Positives = 545/885 (61%), Gaps = 58/885 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT E  F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANEVG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS++E G+RY
Sbjct: 121 VPCERIIRIGDNKGGAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAQEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG     +  +  RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 EVTGAADLSSKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
            D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G
Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +      + SL     A+QF GYD +                          + V A+ +
Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVH-----------------------QQATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E  +G++  VV +QTPFY E+GGQ+GD G          + D QK  + I  H 
Sbjct: 448 NGEAVDEIHAGEEAVVVLNQTPFYGESGGQVGDKGELKNATAVFTVVDTQKYGQAIG-HL 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             + +G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    L
Sbjct: 507 GQLTQGTLRVNHSVDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +NLPV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVETEVMELDTAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIAQLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIAD 793
           Q + L+ +A  +K    N+  +V  + +      R+LQ +  ++  Q +    S  K+  
Sbjct: 682 QSDLLQDVAHLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLVK 741

Query: 794 -VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A
Sbjct: 742 GAKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TAADDKVSLIVGVTKDLTGKVKA 800

Query: 853 VDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L A ++ +V  GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 801 GELIADIAQQV--GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843


>gi|77460496|ref|YP_350003.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123603611|sp|Q3K892|SYA_PSEPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77384499|gb|ABA76012.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 874

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/914 (43%), Positives = 540/914 (59%), Gaps = 65/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G   +     + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERSLT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + +E QR RAR A S GL   +  K+          T+F GY    G        
Sbjct: 420 EAGFEREMEAQRVRARSASSFGLDYNSLVKVDVD-------TEFTGYHATSG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ V A+ + G+ V+    GQ+  VV +QTPFYAE+GGQ+GD G 
Sbjct: 465 ---------------SAKVVALYKDGQSVDVLSEGQEGVVVLNQTPFYAESGGQVGDCGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH ++  G L     +   ++   R   S+NHSATHLL
Sbjct: 510 LQAGNSRFDVRDTTKTG-GAFLHHGVLASGSLIVGAPVETHVEADVRHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N  V T  
Sbjct: 569 HAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVETEE 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A   GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+SE
Sbjct: 629 TDIETAKQKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIGLLKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R L+  
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALE-- 742

Query: 774 HAKRKLQLNV-------EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K+  QL         +DLS     +  V  ++  +   D K L +++D L+ K+   +
Sbjct: 743 --KQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G   E+K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG +   
Sbjct: 801 ILL-GSVHEEKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGA 858

Query: 885 ADQAIAGVASFLKK 898
            D A+A    F+++
Sbjct: 859 LDGALALTVPFVEQ 872


>gi|160871945|ref|ZP_02062077.1| alanyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120744|gb|EDP46082.1| alanyl-tRNA synthetase [Rickettsiella grylli]
          Length = 871

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/887 (41%), Positives = 538/887 (60%), Gaps = 53/887 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N +++R  FL +F+K GH ++PS+SLIP +DP+L+FTN+GMVPFK++F G E+  Y    
Sbjct: 2   NSNALRQLFLNYFKKQGHTIVPSASLIPAHDPSLLFTNAGMVPFKDVFLGLEQRSYSRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI L+W  +T+E  L  
Sbjct: 62  SVQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAILLSWKFMTEELGLSP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+ITV+ ED+EA  +W     ++  +  R    DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 122 EKLWITVFTEDDEAANIWLNEVKINPKRFSRCGRQDNFWSMGDTGPCGPCSEIFYDYGPG 181

Query: 183 IPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG S+  G+RY+EIWNLVFMQ+++    +   LPK S+DTGMGLER+A V+Q  T
Sbjct: 182 ISGGAPGTSTASGDRYVEIWNLVFMQYQRSFDGKHIALPKPSVDTGMGLERLAAVMQGVT 241

Query: 242 NNYDIDLFKHLIQ-ASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NN+D DLF  LI+  +++ +   +   ++   RVI DH+R+ +FLI+DG+ P NEGR YV
Sbjct: 242 NNFDTDLFLPLIKIVAKEASLTDFTTTSL---RVIADHIRACAFLISDGVYPGNEGRSYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   +G   P    L+  L  +M  AYP L++ +  IE+ L  E+++F +
Sbjct: 299 LRRIIRRAVRHGHKIGLDRPFFYRLVRPLALQMQHAYPALVEKQKFIEKILLEEEQKFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL L +  L  L   +   G VAF+LYDT+G P+D+  D+   RGL  ID+  F  
Sbjct: 359 TLTQGLKLFEQELDKLKDKKQFPGLVAFRLYDTYGFPVDLTADMARERGLV-IDMAGFTT 417

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++ Q+ +++  S      TT  +  S K+   AT+F+GY         +E   +    P
Sbjct: 418 EMDAQKKKSKEAS---HFSTTPHVHSSEKK---ATEFVGYK-------TREQADI----P 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            IDL           +   ++ EE   G++  VV  +TPFYAE+GGQ+GDTG  +    R
Sbjct: 461 IIDL-----------LDDKDLKEELAEGEEGFVVLTKTPFYAESGGQVGDTGYLVNATSR 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +    KK   + +H   + +G L+    +   +D + R   ++NHSATHLLH  L  I
Sbjct: 510 FFVITTLKKGS-LILHRGQLIKGHLKKGDKVKAEVDPKKRHATTLNHSATHLLHAVLREI 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+ V Q GS + P+ LRFD ++S P+T  +LK IE+ VN  I  NLPVVT++M+ EDA 
Sbjct: 569 LGTQVMQKGSLVEPERLRFDFSYSSPLTCEQLKLIENRVNWQIRANLPVVTQVMSMEDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY + VRV+++     G  S  LCGGTHVS TG+I L  I  ESS+  G+
Sbjct: 629 KAGALALFGEKYGNNVRVLTI-----GTFSKELCGGTHVSQTGDIGLFKITEESSVSTGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKL 779
           RRI+A+TGQ A   +   ++++  LA     S+  V    E++  E +  Q +  K   L
Sbjct: 684 RRIQALTGQYALDWVAALEDQMNQLAKLFHTSKDTV---FEKVCLEVKTKQSLQKKIAAL 740

Query: 780 QLNV-----EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           Q ++     E+L      I  +N +   ++ +DS  L+ ++D L+ K++  +I+L  I +
Sbjct: 741 QQSIVAMMGEELVSQALTIKGINLLISEMNGIDSAGLRFLVDQLKNKLKPAVIVLTSI-E 799

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +K   +++ VT++L+ +  A +LA  S  +  GG GGGR   AQ+GG
Sbjct: 800 QKNVQLVVGVTKELVGKIKANELAH-SLALTMGGRGGGRADFAQAGG 845


>gi|238753177|ref|ZP_04614619.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238708604|gb|EEQ00880.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 846

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/887 (43%), Positives = 548/887 (61%), Gaps = 61/887 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTSGQWFNLPKEKLWVTVYETDDEAYEIWANEIG 120

Query: 146 LSADKIIRIT------TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYI 198
           +  ++IIRI        +DNFW M +TGPCGPCSEIF+D G+ I GG PGS EE G+RYI
Sbjct: 121 IPHERIIRIGDKGAPFASDNFWQMGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRYI 180

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           EIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ    NY+IDLF+ LI A  +
Sbjct: 181 EIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNTNYEIDLFRDLIAAVAE 240

Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           VTG      N  + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG  
Sbjct: 241 VTGAT--DLNSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNILGAK 298

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           E     L+  L   MGSA  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L  
Sbjct: 299 ETFFYKLVGPLIAVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLTG 358

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
           D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G+
Sbjct: 359 D-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFGA 415

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
                 + SL     A+QF GYD +                          + V A+ + 
Sbjct: 416 D-----YNSLIRVDSASQFSGYDHVH-----------------------QQATVTALFRN 447

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GE V+E   G++  VV +QTPFY E+GGQ+GD G          ++D QK  + I  H  
Sbjct: 448 GEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVSDTQKYGQAIG-HLG 506

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +  G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    LR
Sbjct: 507 QLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYLR 566

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H + +   +++ +ED VN+ I +N+PV T +M  E A   GA AL G KY+D+VRV
Sbjct: 567 FDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELEAAKEKGAMALFGEKYDDQVRV 626

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +++     G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  Q
Sbjct: 627 LTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQ 681

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADV 794
            + L  +A  +K     +  +V  + +      R+LQ +  ++  Q +    S  K+  V
Sbjct: 682 SDLLADVAHLVKGDTHTLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKL--V 739

Query: 795 NFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           N +  ++S++D+ E   L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  
Sbjct: 740 NGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TTADDKVSLIVGVTKDLTSKVK 798

Query: 852 AVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A +L A ++ +V  GG GGGRP MAQ+GG + +    A+A V ++++
Sbjct: 799 AGELIADIAQQV--GGKGGGRPDMAQAGGTDVHALPSALASVEAWVE 843


>gi|229592147|ref|YP_002874266.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229364013|emb|CAY51570.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 872

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/890 (44%), Positives = 531/890 (59%), Gaps = 57/890 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y   T+ 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT    L + +
Sbjct: 64  QKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY  D+EA+ +W +  G+  +++IRI  N       DNFW+M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++ V
Sbjct: 184 DHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERISAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NY+IDLF +L+ AS    G   E  + +  +V+ DH+RS  FLIADG+LP+NEG
Sbjct: 244 MQHVHSNYEIDLFTNLLSASAAAIGCANESQSSL--KVVSDHIRSCGFLIADGVLPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA  +   LG T      ++ AL  EMG A+PEL Q +  IE  L++E+E
Sbjct: 302 RGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGEAFPELKQQQGNIERVLKAEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F KTL+ GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L  ID  
Sbjct: 362 QFSKTLEHGLKILEQDLAEL-KGTVVPGDVVFKLYDTYGFPMDLTADIARERELT-IDEA 419

Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F + +E QR RAR A S GL   T  K+          T+F GY               
Sbjct: 420 GFEREMEAQRVRARSASSFGLDYNTLVKVDVP-------TEFTGY--------------- 457

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                    T G + IV A+ + G+ V+    G +  VV DQTPFYAE+GGQ+GD G   
Sbjct: 458 -------KATVGAAKIV-ALYKDGKSVDVLSEGDEAVVVLDQTPFYAESGGQIGDCGFLS 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R ++ D  K   G F+HH ++  G L     +   +D   R   ++NHSATHLLH 
Sbjct: 510 STSGRFEVRDTTKTG-GAFLHHGVLVLGNLTVGAPVDTQVDADVRHATALNHSATHLLHA 568

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N  V T   +
Sbjct: 569 ALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDVVNAEIRRNTAVETEETD 628

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+SE  
Sbjct: 629 IETAKAKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISEGG 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQ 771
           + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R    +L+
Sbjct: 685 VASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQLE 744

Query: 772 LIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + AK       +DLS     + DV  ++  +   D K L +++D L+ K+   +I+L G
Sbjct: 745 QLQAKAASAAG-DDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL-G 802

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
              E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 803 SVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 851


>gi|257454192|ref|ZP_05619462.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448365|gb|EEV23338.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 890

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 542/914 (59%), Gaps = 65/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+ +F +NGH  + SSSL+P NDPTL+FTN+GM  FK++F G +K  Y+   + 
Sbjct: 8   ADIRQAFINYFAENGHTPVASSSLVPHNDPTLLFTNAGMNQFKDVFLGIDKRDYKRAVSS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI   W+ LT  K   L +
Sbjct: 68  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQQAIPFCWEFLTSDKWLGLPK 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +LY+TVY  D+EAF +W  + GL A++IIRI  N       DNFW+M +TGPCGPC+E+
Sbjct: 128 DKLYVTVYHTDDEAFDIWHNVVGLPAERIIRIGDNKGGQYQSDNFWAMGDTGPCGPCTEV 187

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+ EE G+R++EIWN VFMQF +Q       LP  S+DTGMGLER++
Sbjct: 188 FYDHGEHIWGGLPGTPEEDGDRFVEIWNNVFMQFNRQKDGTLEKLPAPSVDTGMGLERIS 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----VNHRVIVDHLRSSSFLIADG 289
            ++Q   +NY+ID+F HL+Q + QV G+    N+I      + +V+ DH+RS SFLIADG
Sbjct: 248 AIMQGVHSNYEIDIFTHLMQHAAQVIGLP---NDIDLQSEPSLKVLADHIRSVSFLIADG 304

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L + +  IE+
Sbjct: 305 VLPSNEGRGYVLRRIIRRAVRHGNKLGATDNFFYKLVAPLAQIMGDAYPQLREQQANIEQ 364

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L   + L+G   FKLYDT+G P D+  DI+  R 
Sbjct: 365 AILKEEEQFAKTLSQGLKLLSQELDSLKSGDTLSGATVFKLYDTYGFPADLTADIVRERD 424

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           ++ ID   F Q + +QR+RAR       +G     +  L +   AT+F+GYD        
Sbjct: 425 IS-IDEAGFEQGMAQQRARARE------AGKFGVDYNQLIQVDSATEFLGYDKAEH---- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              SS +  +  +G+  E+   G +  +V   TPFYAE GGQ G
Sbjct: 474 -------------------SSTITHLYLEGKSAEQLQEGDEGVIVLSATPFYAEGGGQAG 514

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +    ++ D +K  + I +HH +V+ G +R   S    +  Q R   + NHSA
Sbjct: 515 ELGDIQTETGVFEVQDTKKSGQAI-IHHGVVKMGSIRQGQSSEARVASQVRAMSAKNHSA 573

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL   LG+ V+Q GS +  + LRFD ++ K +T  ++ +IE+ VN  I  N P 
Sbjct: 574 THLLHAALREHLGTGVTQKGSLVNSEVLRFDFSYDKALTEQDIITIENIVNQQILANQPA 633

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIML 707
              +++   A   GA AL G KY D VRV+S+    +DG   S  LCGG HV  TG+I L
Sbjct: 634 TVEMLSMTQAQDKGAMALFGEKYGDTVRVLSMGTVDKDGKPFSIELCGGLHVQRTGDIGL 693

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSE  I AGIRRIEA+TG  A  ++   +++L  LAS LK  +  +  RV ++ ++ 
Sbjct: 694 FKIVSEQGIAAGIRRIEAVTGMGAVKYVQQGEKQLNQLASQLKAKRDEIADRVNQMTDKT 753

Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           R L  QL   ++KL  +      + + D+N    +I+ +   D K L+++ D ++ K+  
Sbjct: 754 RDLEKQLERLQQKLASSQAKDLINNVQDINGQKVLIASLPGMDGKALRTIADDMKSKLHD 813

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GI++L G++ +K A +   V +DL  +  A D+ +  ++ L GG GGG+P  AQ G  + 
Sbjct: 814 GIVVLAGVADDKIA-LTASVGKDLTSKIKAGDIIKHLSEQL-GGKGGGKPDFAQGGATD- 870

Query: 883 NKADQAIAGVASFL 896
                 +AG+ + L
Sbjct: 871 ------VAGLPTVL 878


>gi|291614561|ref|YP_003524718.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584673|gb|ADE12331.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 873

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/910 (42%), Positives = 542/910 (59%), Gaps = 60/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL++F   GH ++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y    + 
Sbjct: 4   SEIRQKFLDYFASKGHTVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRAASS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ F L + +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVFKLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           LY+TVY ED+EA+ +W K  GL+AD++IRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LYVTVYAEDDEAYDIWTKKVGLAADRVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  IPGGLPG+ EE G+RYIEIWN VFMQF +        LPK S+DTGMGLER++ V
Sbjct: 184 DHGAHIPGGLPGTPEEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERISAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ    NY+IDLF+ LI+A+ + T       +  + RV+ DH+R+ SFLIADG++P NEG
Sbjct: 244 LQHVHANYEIDLFQALIKAAARETNQT--NLDQPSLRVLADHIRACSFLIADGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG  E     ++P L  +MGSAYPEL+  ++ ++  L+ E+E
Sbjct: 302 RGYVLRRIIRRAIRHGYKLGAREAFFYKMVPDLVEQMGSAYPELVAEQVRVKGILKLEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  T++ G+ +L+  L+ + K   ++ NG+ AFKL+DT+G PLD+  DI   RG+  +D
Sbjct: 362 RFFATIEHGMAILEADLAEMEKAGGKVFNGETAFKLHDTYGFPLDLTADICRERGVK-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFMKED 472
             +FN A+  Q+ +ARA           K+  +L+    AT F GY+ L  +G+      
Sbjct: 421 DAAFNAAMARQKEQARA-------AGKFKMAANLEYSGPATTFHGYESLEHKGN------ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+ + G  V E   G    VV D TPFYAE+GGQ+GD+G
Sbjct: 468 -------------------ILALYKDGVEVNELNEGDLGVVVLDDTPFYAESGGQVGDSG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK    +F HH +V+ G L     +   +D   R +   NHSATHL
Sbjct: 509 ELRSVHGIFAVEDTQKIQASVFGHHGVVKTGKLSVGNGVTARVDVAARSRTMRNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  D  RFD  H++P++ AE++ +E  VN  I  N    +R
Sbjct: 569 MHKALREVLGTHVQQKGSQVDADKTRFDFVHTQPMSDAEIRKVEAIVNAEILSNAECQSR 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  E+A  +GA  L G KY D VRV+++        S  LCGGTHV  TG+I L  IV+
Sbjct: 629 VMPIEEAQKTGAMMLFGEKYGDVVRVLNIG------SSIELCGGTHVKRTGDIGLFKIVA 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES + AG+RR+EA+TG+ A + +  Q+ +L+ +A  +K        R+ +I +  + L  
Sbjct: 683 ESGVAAGVRRVEAVTGEGALALVQQQEVQLQQVADAVKAQPQEAAARITQILDNVKSLEK 742

Query: 771 QLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K KL     D        ++ V  ++  +   D+  L+  +D L+ K++S  ++L
Sbjct: 743 ELAALKSKLASAQGDELLAQAQDVSGVKVLAAKLDGADAAVLRETLDKLKDKLKSAAVVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ E K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       +
Sbjct: 803 ASVA-EGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPEHLAK 860

Query: 888 AIAGVASFLK 897
           A+A V  ++K
Sbjct: 861 ALASVPDWVK 870


>gi|88706721|ref|ZP_01104423.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699042|gb|EAQ96159.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 867

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/899 (42%), Positives = 547/899 (60%), Gaps = 48/899 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL  F+ +GH+ +PSSSL+P +DPTL+FTN+GM  FK++F G E   Y    + Q+
Sbjct: 6   IREAFLAHFESHGHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAETRSYSRAVSAQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT E  L + +L+
Sbjct: 66  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRFAWDFLTVELGLPREKLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TV+  D+EA K+W +  G  A++I R+   DNFW M +TGPCGP SE+F+D GE +PGG
Sbjct: 126 VTVHITDDEAEKIWIEDIGFPAERISRL-DEDNFWQMGDTGPCGPSSEVFYDHGEDVPGG 184

Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            PGS ++  +RYIEIWNLVFMQ+ +    E   LPK S+DTGMGLER+A +LQ   +NYD
Sbjct: 185 PPGSPDDDLDRYIEIWNLVFMQYNRSADGEMAPLPKPSVDTGMGLERIAAILQGVHSNYD 244

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           IDLF+ LIQ++ ++ G   +     + RVI DH+RSS+FLI DG+LP NEGR YVLRRIM
Sbjct: 245 IDLFQALIQSAAEMVGT--DDLKASSLRVIADHIRSSAFLIIDGVLPGNEGRSYVLRRIM 302

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ +   LG        L+P+L  EMG  YPEL + +  IE+ +R E+E+F +TL++G
Sbjct: 303 RRAIRHGNKLGADALFFHKLVPSLVAEMGDFYPELREQQTRIEDVIRGEEEQFARTLEQG 362

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           +V+L+  L+ +    ++ GDV FKLYDT G P+D+  DI   R  + +D+  +  A++ Q
Sbjct: 363 MVILNEALAEM-SGTVIPGDVVFKLYDTFGFPVDLTNDIARERDFS-LDMEGYEAAMQAQ 420

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R R++        G     +       G T F GYD   G                    
Sbjct: 421 RERSKE------GGAFAVDYNRTLTLDGETLFTGYDESTG-------------------- 454

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
              S  V A+++ GE V    +G    V+ D+TPFY E+GGQ GD+G    +G+RL+I+D
Sbjct: 455 ---SGTVVALLRDGEEVNALTAGDNGIVILDRTPFYGESGGQAGDSGYLRSNGLRLEISD 511

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
              KA G  +HH  V  G +    ++   ID   R++  +NHSATHLLH AL   LG HV
Sbjct: 512 T-TKARGHHLHHGKVLEGSIALGDTVECEIDNAIRQKTRLNHSATHLLHAALRYELGDHV 570

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS +    LRFD ++ + +T  +L+++ED+VN  I  N+ V T+IM+ ++A  +GA 
Sbjct: 571 AQKGSLVDGQRLRFDFSNPEAMTPEQLRAVEDSVNAQIRANVEVTTQIMSMDEAREAGAM 630

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY D VRV+++  E+G   S  LCGGTHV  TG+I +  I+SE  + +G+RRIEA
Sbjct: 631 ALFGEKYGDEVRVLTMG-ENG--FSVELCGGTHVERTGDIGMFRILSEGGLASGVRRIEA 687

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNV 783
           +TG+ A   +   D  L  +   L+ +  NV  +V  +  + R L  +L   K+KL  + 
Sbjct: 688 VTGEHALREMRTVDHALGEVCELLRATTDNVRDKVAALRSQNRDLEKELARLKQKLASSA 747

Query: 784 -EDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
             D++   I DV+ +  + + VD  +   L+ +MD  + K+ SG+I+L  ++ +K A ++
Sbjct: 748 GSDITASAI-DVDGVKVLAAAVDGADPGALRGIMDQCKNKLGSGVILLAAVNDDKVA-LV 805

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             VT+DL +R  A DL R  A  L GG GGGRP MAQ GG        A+  V +++ +
Sbjct: 806 AGVTKDLTERVRAGDLMREFAGRL-GGKGGGRPDMAQGGGTEPALLPAALEAVPAWVAE 863


>gi|56475970|ref|YP_157559.1| alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81598995|sp|Q5P7Q3|SYA_AZOSE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56312013|emb|CAI06658.1| Alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 873

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/906 (41%), Positives = 543/906 (59%), Gaps = 56/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH+++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 4   AEIREKFLKFFESKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+EF L + +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWELLTEEFGLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY +D+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYADDDEAYDIWTKEIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP+ S+DTGMGLER++ V
Sbjct: 184 DHGPEIWGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPRPSVDTGMGLERVSAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF+ LI+A+ + TG      +  + +VI DH+R+ SFLIADG++P NEG
Sbjct: 244 LQHVHSNYEIDLFQTLIRAAARETGCA--DLDSPSLKVIADHIRACSFLIADGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        L+P L TEMG AYPEL   +  + + L+ E+E
Sbjct: 302 RGYVLRRIIRRAIRHGYKLGSRAAFFHRLVPDLVTEMGPAYPELKAGQARVADVLKQEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  T++ G+ +L+  L+ +        NG+ AFKL+DT+G PLD+  D+   R +  +D
Sbjct: 362 RFFATIENGMAILETELAAMATAGSRTFNGETAFKLHDTYGFPLDLTADVCRERDVT-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F+ A+  Q+ +ARA           ++  +L+ +   T+F GY+ L       E+R 
Sbjct: 421 AAAFDAAMARQKEQARA-------AGKFRMAMNLEYEGPETKFHGYERL-------EER- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G  
Sbjct: 466 ---------------GTVLALYKDGAPVVELQEGDIGVVVLDNTPFYAESGGQVGDRGEL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G     ++ D QK    ++ HH +V+ G L     L   +D + R     NHS THL+H
Sbjct: 511 RGSAGIFEVEDTQKIQAAVYGHHGVVKTGRLAVGQELGARVDGEARASTQRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD  RFD  H+ P++  E++ +ED VN  I  N+    R+M
Sbjct: 571 KALREVLGAHVQQKGSQVDPDKTRFDFAHTAPLSPEEIREVEDLVNAEILANVATEARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + +DA  SGA  L G KY D VRV+++        S  LCGGTHV+ TG+I L  IVSE 
Sbjct: 631 SIDDAQKSGAMMLFGEKYGDEVRVLAIG------SSKELCGGTHVARTGDIGLFKIVSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG  A  +   Q+ +++ +++ LKV    V  R+  I +  R L  +L
Sbjct: 685 GVAAGVRRIEAVTGANALRYAQEQERRVQGISALLKVQPDEVAERIAGILDNVRALEKEL 744

Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L  +  D    +  +V     ++ ++   D   L+  +D L+ K++S +I+L  
Sbjct: 745 ARMKSRLAASQGDELVAQAVEVRGAKVLAAMLEGADVATLRETLDKLKDKLKSAVIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + + S++  VT DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+
Sbjct: 805 VA-DGRVSLIAGVTSDLTAKLKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDPAHLPAAL 862

Query: 890 AGVASF 895
           A V ++
Sbjct: 863 ASVKAW 868


>gi|283853948|ref|ZP_06371151.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283570662|gb|EFC18719.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 880

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/910 (44%), Positives = 550/910 (60%), Gaps = 64/910 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+ + SS LIP  DPTL+FTN+GMV FK +F GQ+KP Y+ 
Sbjct: 1   MMTANEIRAKFLDFFAAQGHQKVASSPLIPREDPTLLFTNAGMVQFKKVFLGQDKPGYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EA  LWKKI+GL+ D+I R+   DNFWSM +TGPCGPCSEI FD+G
Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLTDDRIFRLGEKDNFWSMGDTGPCGPCSEIMFDRG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G+  + +RY+EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V+
Sbjct: 181 EEVSCGPDCGIGTC-DCDRYLEIWNLVFMQYDQIAPGNRVALPRPSIDTGMGLERIAAVV 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N+DIDLFK +I ++  + G+ Y  N+  +   RVI DH RS +FL+ADG++P+NE
Sbjct: 240 QGVHSNFDIDLFKAIIASAATIAGVAYGHNDEHDTALRVIADHSRSVAFLLADGVMPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + +L+G ++P +      +   MG A+PEL+  +  +E  +R E+
Sbjct: 300 GRGYVLRRLIRRALRFGKLIGLSDPFLYKTAGTVVDVMGDAFPELLAGREFMERVVREEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERFG TLD+GLV+L   L  LG+  + +++G  AFKLYDT+G PLDI+ D+   RG+A  
Sbjct: 360 ERFGVTLDKGLVILAEELDRLGEAGEAVISGQFAFKLYDTYGFPLDIVNDVAGKRGMAA- 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   +   + EQ++RA+    G G      ++  L E    ++F+GYD L G+       
Sbjct: 419 DEDGYRACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYDALTGA------- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       + V+++V A   +G+ VE  V+G+   +V   TPFY E+GGQ GD G 
Sbjct: 472 ------------SRVNALVSA---EGQAVERLVAGETGYMVCAVTPFYGESGGQSGDVGL 516

Query: 534 A---IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                GD     +    K    +  HH  V++G +  +    L +D   R   + NH+AT
Sbjct: 517 VSTLTGDA---AVIGAIKAGPDLTAHHIEVKKGEILLDQEAELAVDPAVRAATARNHTAT 573

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHV+Q GS +TPD LRFD TH   +T  EL  +ED VN  I  + PVV
Sbjct: 574 HLLHKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELARVEDEVNAAILLDAPVV 633

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  + A A GA AL G KY D VRVV V     GV +   CGGTH+ +TG+     I
Sbjct: 634 TEVMGIDAARAKGATALFGEKYGDEVRVVEVP----GV-TMEFCGGTHLRATGQAGSFLI 688

Query: 711 VSESSIRAGIRRIEAITGQRARSH---LMGQ-DEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           +SES + AG RRIEA TG  A  H   + G+ DE LK+    LK   G +V RV++++++
Sbjct: 689 LSESGVAAGTRRIEAATGLNALRHVREMRGEYDEGLKT----LKAKPGELVPRVKKLFDD 744

Query: 767 YRKLQLIHAKRKLQL-------NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            R L     K K QL          DL     ++  V  +   +   + K L+  MD L+
Sbjct: 745 IRAL----GKEKEQLAGKLASGQGRDLMAGLEEVGGVKLLCARVDAPNVKALREAMDDLR 800

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+ SG+I L    ++ K S+++ V++DL  RF A  L +  A    GG GGGRP MAQ+
Sbjct: 801 SKLPSGVIALAAEQEDGKVSLIVAVSKDLHARFTAPVLIK-DAAASVGGSGGGRPDMAQA 859

Query: 878 GGPNGNKADQ 887
           GG N    D+
Sbjct: 860 GGTNPAGIDE 869


>gi|313672790|ref|YP_004050901.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939546|gb|ADR18738.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 873

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/906 (42%), Positives = 556/906 (61%), Gaps = 45/906 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL++F+K+GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MISGKDIREKFLKYFEKHGHKIVDSSSLVPQNDPTLLFTNAGMNQFKDLFLGLEKREYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE  L
Sbjct: 61  ATTCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y +DEEAF++W K+ G+ A+KI+R    DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PEEKLFVSIYYDDEEAFEIWNKVIGIPAEKILRRGEKDNFWSMGDTGPCGPCSEIHIDQG 180

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                  P  +   + +R++E+WNLVFMQ+++    +   LPK SIDTGMGLER+  V Q
Sbjct: 181 PEAGCRKPDCNPDCDCDRHLELWNLVFMQYDRSADGKLTPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANE 295
            K +NYD DL K +I+ + ++ G  Y GNN    V+ RVI DH RS++FLIADG++P+NE
Sbjct: 241 GKLSNYDTDLIKPIIEFTAKLAGKNY-GNNEKDDVSLRVIADHSRSTTFLIADGVIPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRIMRRAM + ++LG+       +   +   MG  Y EL   K  I + +  E+
Sbjct: 300 GRGYVLRRIMRRAMRHGKMLGFDGTFFYKVCEFVVDFMGDHYIELKDKKDYISKMVAFEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           +RF +TLD GL L+D +L      + ++G   FKLYDT+G P+D++QDI    G   +D+
Sbjct: 360 KRFSRTLDLGLKLIDELLEKNKDRKEISGSEIFKLYDTYGFPIDLLQDIAEDNGYK-LDL 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F++ +  Q+ RA+ H +G G     +++  L   +  T+F GYD              
Sbjct: 419 MGFDKEMALQQERAKKHWVGSGEEKIAEVYKKL--SHLKTEFQGYD-------------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                     + +SS + A+++ GE  +E   G++V+++ +QTPFY E GGQ GDTG   
Sbjct: 463 ---------NHSLSSKILALIENGEEKQEVQEGKEVDILLEQTPFYPEGGGQQGDTGTIY 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ D  KK   + VH AIV++G L+   ++   ID   R     NH++THLLH 
Sbjct: 514 SREAIAEVKDT-KKYGNLIVHKAIVKKGTLKVGENVTAEIDSVKRIATERNHTSTHLLHK 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  + LRFD +H + I+  ++  IE  VN II +NL V   +M 
Sbjct: 573 ALQMVLGDHVRQAGSLVNDEKLRFDFSHFEAISKDDIIEIERIVNSIIIKNLSVTKTLMP 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SGA AL G KY+  VRVV V        S  LCGG HV +TGEI    I+ E S
Sbjct: 633 IEEAVKSGAMALFGEKYDRIVRVVEV-----SDFSKELCGGCHVRNTGEIGFFRIIGEMS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772
           + AG+RRIEA+TG +A    +     L  +   +KVSQ  +V RV+++ EE + ++    
Sbjct: 688 VAAGVRRIEAVTGMKAFDEYVKMKNILDDIMLTIKVSQDQIVSRVKDLLEENKAIKKDLD 747

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
               R+L   +EDL    + I  V  +S  IS  D  +++ + D ++ KI+SGI+++  I
Sbjct: 748 DQKSRELMKMMEDLDRYTYDINGVKLISIKISYPDINKVRELADNIKDKIKSGIVLIAAI 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K ++L  +T DL DRF+A  + +   K+  GGGGGGR   AQ+GG + +K D+A+ 
Sbjct: 808 NND-KLTILCGITRDLTDRFSADKIVKEITKIT-GGGGGGRSDFAQAGGKDISKLDEALT 865

Query: 891 GVASFL 896
            + SFL
Sbjct: 866 KIKSFL 871


>gi|325271425|ref|ZP_08137952.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324103458|gb|EGC00778.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 874

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/891 (43%), Positives = 534/891 (59%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELTSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L +  ++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-QGAVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT+F+GY             
Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T G   I+ A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD+G 
Sbjct: 460 ---------DATEGQGKII-ALYKDGQSVDQLGVGEQGVVVLDRTPFYAESGGQVGDSGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVTSGALLIGAPVEAKVDADVQHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   +LK +ED VN  + +N PV T +
Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQLKQLEDIVNREVRKNTPVETEL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+++    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLTM----GGDFSVELCGGIHAKRTGDISLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|205830055|sp|Q0VNK2|SYA_ALCBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 863

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/901 (43%), Positives = 548/901 (60%), Gaps = 48/901 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL++F   GH  + SSSL+P NDPTL+FTN+GM  FK++F G+E   Y   T+ 
Sbjct: 4   AELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L + R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLPEER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G  +P
Sbjct: 124 LWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADVP 182

Query: 185 GGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS++E  +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ   +N
Sbjct: 183 GGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGVHSN 242

Query: 244 YDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           Y+IDLF+ L+QA+ + TG    E  ++   RVI DH+RS+SFLI DG++P+NEGRGYVLR
Sbjct: 243 YEIDLFQALLQAAAKATGCTDLEEKSL---RVIADHIRSASFLICDGVIPSNEGRGYVLR 299

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +   LG  +P    L+ AL  EMG AYPEL + +  IE+ L +E+E+FG+TL
Sbjct: 300 RIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGRTL 359

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
             G+ +L+  +  L    +L GDV F LYDTHG P D+  D+   R L+ +D+  F  A+
Sbjct: 360 AAGMKVLESAIEQL-DGRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEAAM 417

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             QR RAR      G+G+    +         T F GY+ L       +D  V+      
Sbjct: 418 AAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKL------ADDNTVV------ 459

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                      A+ + G  V+   +G++  VV D+TPFYAE+GGQ+GDTG  I D  R  
Sbjct: 460 -----------ALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEARFM 508

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +TD +K+ +   VH      G L     +   +D   R  +  NHSATHL+H AL  +LG
Sbjct: 509 VTDTRKR-QAAHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNVLG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS ++ D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ E A  +
Sbjct: 568 EHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAREA 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY+D+VRV+S+   DG   S  LCGGTHV+ TG+I L  I  E+S  AG+RR
Sbjct: 628 GAMALFGEKYDDQVRVLSMG-SDG--FSKELCGGTHVNRTGDIGLFRITLEASAAAGVRR 684

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQ 780
           IEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L  ++   K+KL 
Sbjct: 685 IEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQKLA 744

Query: 781 LNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                    ++ D+N +  + +++   D K L+  MD L+ K+ S +I+L  +  EK A 
Sbjct: 745 SGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGEKVA- 803

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++  VT+DL  ++ A DL +  A+ +  G GGGRP MAQ GG N      A+  V +++ 
Sbjct: 804 LVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAWVA 862

Query: 898 K 898
           +
Sbjct: 863 E 863


>gi|114330803|ref|YP_747025.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122314262|sp|Q0AHX2|SYA_NITEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114307817|gb|ABI59060.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 863

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/900 (41%), Positives = 549/900 (61%), Gaps = 48/900 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y    + 
Sbjct: 4   SEIRQKFLDFFETHGHVVVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRAVSA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT   ++ + +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAILFAWEFLTGPLNIPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ TVY ED+EA  +W     ++  +++RI T+DNFW M ETGPCGPCSEIF+D G  + 
Sbjct: 124 LWATVYAEDDEAADIWLNEVKIAPSRLVRIATSDNFWQMGETGPCGPCSEIFYDHGPEVA 183

Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS + +G+RY+EIWNLVFMQ+ +    E   LPK S+DTGMGLER+A V+Q+  +N
Sbjct: 184 GGPPGSEDADGDRYVEIWNLVFMQYNRDTSGELHPLPKPSVDTGMGLERIAAVMQQVHSN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+IDLF+ LI+A+ +VTG +   NN +  +VI DH+R+ +FLI DG++P NEGRGYVLRR
Sbjct: 244 YEIDLFRCLIEAAARVTGEQDLSNNSL--KVIADHIRACAFLITDGVIPGNEGRGYVLRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG  +     L+  L   MG AYPEL+ AK  +   +R E+ERF +TL+
Sbjct: 302 ILRRAIRHGYRLGQKQSFFHLLVDDLVDVMGQAYPELMAAKKHVIAVIRQEEERFAETLE 361

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +L+  L+   +  +L GDV F+LYDT G P+D+  DI   RG  GID+  F   + 
Sbjct: 362 NGMGVLEAALAR--ESNMLPGDVVFRLYDTFGFPVDLTADIARERG-GGIDLAGFEMCMA 418

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +QR RARA          E +          T+F GY+ L      + +  +L       
Sbjct: 419 QQRDRARASGKFTMQAGLEYVGLP-------TEFHGYETL------QHEAHILV------ 459

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                      + ++G  V+   +G +  VV DQTPFYAE+GGQ GD+G  +       +
Sbjct: 460 -----------LYKEGSHVDFIEAGDEAVVVLDQTPFYAESGGQAGDSGELLSGSGTFTV 508

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK    +F H  ++  G L T   ++  ++   R   + NHSATHLLH AL  ILG+
Sbjct: 509 KDTQKIQAKVFGHAGMLSSGRLVTGDRVIARVNPIARINTAYNHSATHLLHAALRQILGN 568

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +  D LRFD +H+  + + E++ +E+ VN  I +N  V T++M  ++A+  G
Sbjct: 569 HVTQKGSLVDADRLRFDFSHNSAMQANEIRQVENLVNAQIRKNHEVATQLMAYDEAVKQG 628

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+D VRVVS+     G  S+ LCGGTHV  +G+I    IV+ES + AGIRRI
Sbjct: 629 AMALFGEKYSDTVRVVSM-----GDFSTELCGGTHVQHSGDIGFFRIVAESGVAAGIRRI 683

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLN 782
           EA+TG+ A ++   Q+++L+ ++  LK +      ++ ++ +  R+++  I   R     
Sbjct: 684 EALTGEAALAYTQQQEQQLQQVSDVLKAAPHEAALKLSQVLDHVRQVEKEITVLRSKLAG 743

Query: 783 VEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           ++  S      +I  +  ++  +  V+ + L+  +D  + +++S +++L G  ++ K  +
Sbjct: 744 MQSSSLIEQAQEIKGIRVLAAALENVNVRTLRETLDNFKSRLKSCVVVL-GTIEDDKVML 802

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT DL  +  A DL    A+ + GG GGGR  MAQ+GG   +K  QA+  VA ++++
Sbjct: 803 IAGVTNDLTAKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPDKLPQALTSVAGWVER 861


>gi|319794254|ref|YP_004155894.1| alanyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315596717|gb|ADU37783.1| alanyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 874

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/872 (42%), Positives = 522/872 (59%), Gaps = 55/872 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G++K  Y    
Sbjct: 7   TVADIRKTFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRNYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++  A++LLTK + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY ED+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLWATVYIEDDEAYDIWTKEIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD   E   G      E+G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 187 FFDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K  GNN +  RVI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNNSL--RVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG  +P    L+P L   MG AYP+L+  +  I +TL++E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGDAYPKLVADEKRITDTLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG++ +D
Sbjct: 365 EERFFETLANGMEILDAALA--GGAKTLPGDVAFKLHDTYGFPLDLSADVCRERGVS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+E+Q++  RA       G   K+  +++       F GY+ L      +E  K
Sbjct: 422 EAGFNVAMEKQKAAGRA-------GGKFKMDRNVEYTGAGNTFTGYEHL------EESAK 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V+                 A+  +G  V E   GQ   VV D TPFY+E+GGQ+GD G  
Sbjct: 469 VV-----------------ALYFEGAAVNELKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G++  + D QK    +F HH    +G L+   ++   +D   R     NHS THL+H
Sbjct: 512 SAEGVQFGVEDTQKIKADVFGHHGTQTQGTLKVGDAVKAAVDGARRNATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  D  RFD  H+ P+T  ++  IE  VN  I  N+    R+M
Sbjct: 572 KALREVLGDHVQQKGSLVDADKTRFDFAHNAPVTRDQILEIEKRVNAEILSNVATQARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  IVSE 
Sbjct: 632 DMESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVGRTGDIGLFKIVSEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG  A ++L   +  ++S+A+ LK     + GR+ ++ E+ R L  ++
Sbjct: 686 GVAAGVRRIEAVTGANALTYLQDLESTVQSVAATLKSPAAELQGRLSQVLEQVRALEREV 745

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  D+N +  + +++   D+K L+  MD L+ K+++ II+L  
Sbjct: 746 GSLKGKLASSKGDELIAQAVDINGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAIIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +  + K  +   VT D + +  A +L    A+
Sbjct: 806 VDGD-KVQIAAGVTADTVGKAKAGELVNFVAQ 836


>gi|89092119|ref|ZP_01165074.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89083854|gb|EAR63071.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 854

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/896 (42%), Positives = 531/896 (59%), Gaps = 54/896 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEFF++ GHE++ SSSLIP NDPTLMFTN+GMV FK++F G +K  Y   T+ 
Sbjct: 7   AEIRQAFLEFFKQQGHEIVASSSLIPANDPTLMFTNAGMVQFKDVFLGTDKRNYTRATSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT+   L + R
Sbjct: 67  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWTFLTETLGLPKER 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA ++WK+  G+  ++  ++   DNFWSM +TGPCGPC+EIFFD G  + 
Sbjct: 127 LWVTVHHSDDEAERIWKEEIGVDPERFSKL-DEDNFWSMGDTGPCGPCTEIFFDHGADVW 185

Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS EE G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLER+A V+Q   +N
Sbjct: 186 GGPPGSPEEDGDRYIEIWNVVFMQYNRSADGEMTPLPKPSVDTGMGLERIAAVMQNVHSN 245

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+ID+F++L++A+    G     N  +  RVI DH+RS SFLI DG+LP+NEG GYVLRR
Sbjct: 246 YEIDMFQNLLKATAAAVGTTDMDNKSL--RVIADHIRSCSFLIVDGVLPSNEGAGYVLRR 303

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG   P    L+ AL  EMG AYPEL + +  +E  L  E+E+F KTLD
Sbjct: 304 IIRRAVRHGNKLGAKGPFFNQLVEALVKEMGEAYPELAEKQSQVERVLLKEEEQFAKTLD 363

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ LL   +  L    ++ G+  FKLYDT+G P D+  D+     L  ID   F + +E
Sbjct: 364 HGMRLLHEAIEGL-DGTVIPGETVFKLYDTYGFPHDLTADVAREHELT-IDEEGFEREME 421

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR RARA      +G     +    +  G T F GY+LL                    
Sbjct: 422 AQRERARA------AGKFSVDYNDAIKLEGETSFTGYELLESD----------------- 458

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +S V A+ ++GE V+   +G+   VV D+TPFYAE+GGQ+GDTG          +
Sbjct: 459 -----ASTVVALFKEGEAVDTLQTGETGLVVLDETPFYAESGGQVGDTGALNASASVFAV 513

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           T+  K+ +   +HH  VE+G L     +   +D   R+ +++NHSATHLLH AL  +LG 
Sbjct: 514 TNCTKEGKN-NLHHGSVEQGSLSVGDKVAPQVDAVRRKAIALNHSATHLLHEALRVVLGE 572

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS      LRFD +H + +T  ++  +E  VN  I  N  VVT IM  E A A G
Sbjct: 573 HVQQKGSLNDDQRLRFDFSHFEAVTPEQIAEVEALVNQQIRDNSEVVTEIMEIEAAKAKG 632

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           AAAL G KY+D VRV+++    GG  S  LCGGTH   TG+I LL I SE  + AGIRR+
Sbjct: 633 AAALFGEKYDDVVRVLTM----GGDFSVELCGGTHAKRTGDIGLLKITSEGGVAAGIRRV 688

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLN 782
           EA+TG  A  +   Q  + ++     K+ +     R +E+  E+ +          L  N
Sbjct: 689 EAVTGAVALDYFADQKGQFEA-----KLQEQQAKTRQLEKELEQMKAKLAAAKGADLVSN 743

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             D+   K+     ++  +  V+ K L+  +D L+ K+ SG+++L     + K ++   V
Sbjct: 744 AVDVKGVKV-----LAAKLEGVEPKALRDTIDQLKNKLGSGVVVLA-TESDGKIALAAGV 797

Query: 843 TEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           T++L  +  A DL + L+AK+  GG GGGRP  AQ GG +    + A+  VA  ++
Sbjct: 798 TKELTSKVRAGDLIKELTAKL--GGKGGGRPDFAQGGGTDLQALEGALDSVAGLVE 851


>gi|114320637|ref|YP_742320.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311690|sp|Q0A8K7|SYA_ALHEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114227031|gb|ABI56830.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 869

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/904 (42%), Positives = 535/904 (59%), Gaps = 48/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FLEFF+  GH ++PSS L+P NDPTL+FTN+GMVPFK++F G+E+  Y  
Sbjct: 1   MKSSAEIRNAFLEFFEHRGHTVVPSSPLVPANDPTLLFTNAGMVPFKDVFLGKEQRGYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT+   L
Sbjct: 61  ACSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWEFLTRTIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL++TVY+ED+EA  +W    G+  ++  RI   DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 PAERLWVTVYEEDDEAADIWLNEIGVDPERFGRIGAADNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+RY+EIWNLVFMQ+++  +     LP   +DTGMGLER+A V+Q 
Sbjct: 181 PEVPGGPPGSPEEDGDRYVEIWNLVFMQYDRDAEGRLAPLPMPCVDTGMGLERLAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +N++IDLF+ LI A+  + G+  + +N  + +VI DH+R+ +FLI DG++PAN+GRGY
Sbjct: 241 VHSNFEIDLFRRLIGAAAALAGLPEDSDN-ASLKVIADHIRACAFLITDGVVPANDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  EP    L+  L  EMG A+PEL + + L+E  L  E++RF 
Sbjct: 300 VLRRIIRRAVRHGYKLGIDEPFFHRLVQPLADEMGGAFPELPERQALVERLLLQEEQRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL+  L  L   EI  G+  FKL DT+G P+D+  DI   R L  +D+  F 
Sbjct: 360 ETLEQGLKLLEEDLRQLTGAEI-PGETVFKLADTYGFPVDLTADIARERDLT-LDMAGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQ 478
             +  QR RARAHS         K+     E++ G + FIGYD L G             
Sbjct: 418 ACMAAQRERARAHS-------QFKVQHGEGEQFEGESHFIGYDQLEG------------- 457

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537
                        V A+ + G  V+   +G++  V+ DQTPFYAE+GGQ+GD G      
Sbjct: 458 ----------HGEVLALFRDGRSVQTLSAGEEGMVILDQTPFYAESGGQVGDQGVLETAG 507

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G   ++ D  K+ EG   H   +  G +     L   +D + R   ++NHSATHLLH AL
Sbjct: 508 GEVFEVRDTLKQGEG-HGHLGRLREGRIHVGDRLRAQVDAETRWATALNHSATHLLHAAL 566

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS + PD LRFD  H +  ++ +L+ IE  VND I  N       M  +
Sbjct: 567 RGVLGTHVQQKGSLVAPDRLRFDFAHYEAPSTEQLEQIERIVNDEIRANRAADIEHMAYD 626

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DAI +GA AL G KY D+VRV+       G  S  LCGGTHV  TG+I L  ++SE  + 
Sbjct: 627 DAIETGAMALFGEKYGDQVRVLRF-----GEFSIELCGGTHVERTGDIGLCKLISEGGVA 681

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
            G+RRIEA+TG RA   +   +++L  +A  +K S  N   RV ++ +  +  + +L   
Sbjct: 682 GGVRRIEAVTGDRAVMWVQRTEQRLVQVAETVKASPDNAAVRVAQLVDRLKGQEKELERL 741

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKE 833
           K+KL          +  D+  +  + + VD+  K L+  +D L+ K+ + +I+L  ++ +
Sbjct: 742 KQKLASQAGSDLAGQAVDIGGVKVVAARVDADNKALRDTVDQLRNKLGTAVIVLGAVAGD 801

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  V++D  DR  A DL R  A+ + GG GGGRP  AQ+GG      + A+A V 
Sbjct: 802 -KVRLVAGVSKDCTDRIKAGDLVRQVAEQV-GGKGGGRPDFAQAGGEQPEHLETALASVE 859

Query: 894 SFLK 897
           S ++
Sbjct: 860 SLVR 863


>gi|167034974|ref|YP_001670205.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|166861462|gb|ABY99869.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 897

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/891 (43%), Positives = 533/891 (59%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 27  AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 86

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 87  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 146

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 147 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 206

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 207 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 266

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 267 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 324

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 325 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 384

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 385 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 442

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT+F+GY             
Sbjct: 443 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 482

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T     I+ A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDTG 
Sbjct: 483 ---------DATEAQGKII-ALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGF 532

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 533 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 591

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  + +N  V T +
Sbjct: 592 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVETEL 651

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 652 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 707

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 708 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 767

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 768 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 826

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 827 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 876


>gi|205830253|sp|B0KR43|SYA_PSEPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/891 (43%), Positives = 533/891 (59%), Gaps = 57/891 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 4   AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  L++E
Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L  ID
Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A + G+        + SL +   AT+F+GY             
Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                    D T     I+ A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GDTG 
Sbjct: 460 ---------DATEAQGKII-ALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGF 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSATHLL
Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  + +N  V T +
Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVETEL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I+SE
Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L  Q
Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744

Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   + K      +DLS    ++     ++  +   D K L +++D L+ K+   +I+L 
Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP MAQ GG
Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853


>gi|110834659|ref|YP_693518.1| alanyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110647770|emb|CAL17246.1| (alanyl-tRNA synthetase) [Alcanivorax borkumensis SK2]
          Length = 900

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/901 (43%), Positives = 548/901 (60%), Gaps = 48/901 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL++F   GH  + SSSL+P NDPTL+FTN+GM  FK++F G+E   Y   T+ 
Sbjct: 41  AELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRATSS 100

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L + R
Sbjct: 101 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLPEER 160

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G  +P
Sbjct: 161 LWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADVP 219

Query: 185 GGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PGS++E  +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ   +N
Sbjct: 220 GGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGVHSN 279

Query: 244 YDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           Y+IDLF+ L+QA+ + TG    E  ++   RVI DH+RS+SFLI DG++P+NEGRGYVLR
Sbjct: 280 YEIDLFQALLQAAAKATGCTDLEEKSL---RVIADHIRSASFLICDGVIPSNEGRGYVLR 336

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +   LG  +P    L+ AL  EMG AYPEL + +  IE+ L +E+E+FG+TL
Sbjct: 337 RIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGRTL 396

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
             G+ +L+  +  L    +L GDV F LYDTHG P D+  D+   R L+ +D+  F  A+
Sbjct: 397 AAGMKVLESAIEQL-DGRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEAAM 454

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             QR RAR      G+G+    +         T F GY+ L       +D  V+      
Sbjct: 455 AAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKL------ADDNTVV------ 496

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                      A+ + G  V+   +G++  VV D+TPFYAE+GGQ+GDTG  I D  R  
Sbjct: 497 -----------ALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEARFM 545

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +TD +K+ +   VH      G L     +   +D   R  +  NHSATHL+H AL  +LG
Sbjct: 546 VTDTRKR-QAAHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNVLG 604

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS ++ D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ E A  +
Sbjct: 605 EHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAREA 664

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY+D+VRV+S+   DG   S  LCGGTHV+ TG+I L  I  E+S  AG+RR
Sbjct: 665 GAMALFGEKYDDQVRVLSMG-SDG--FSKELCGGTHVNRTGDIGLFRITLEASAAAGVRR 721

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQ 780
           IEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L  ++   K+KL 
Sbjct: 722 IEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQKLA 781

Query: 781 LNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                    ++ D+N +  + +++   D K L+  MD L+ K+ S +I+L  +  EK A 
Sbjct: 782 SGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGEKVA- 840

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++  VT+DL  ++ A DL +  A+ +  G GGGRP MAQ GG N      A+  V +++ 
Sbjct: 841 LVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAWVA 899

Query: 898 K 898
           +
Sbjct: 900 E 900


>gi|296135261|ref|YP_003642503.1| alanyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795383|gb|ADG30173.1| alanyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 917

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/953 (40%), Positives = 545/953 (57%), Gaps = 98/953 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           NVS IR  FL +F+  G   + SSSL+P NDPTL+FTNSGMV FK++F GQ++  Y+  T
Sbjct: 2   NVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L  
Sbjct: 62  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 EKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK-QERF---------------- 217
           F+D G  + GG PGS EE G+RYIEIWNLVFMQFE+    +ERF                
Sbjct: 182 FYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFETEDQATARKQAVEAE 241

Query: 218 ---------------------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
                                 LPK  +DTGMGLER+A VLQ   +NY+IDLF+ LI+A+
Sbjct: 242 GGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKAA 301

Query: 257 EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
            + T     G+   + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ +   LG
Sbjct: 302 ARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKLG 359

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
             +P    ++P L  +MG+AYPEL +A+  + E L++E+ RF +T++ G+ +LD  L+ L
Sbjct: 360 VRQPFFYKMVPDLVAQMGAAYPELAEAQGRVAEVLQAEEARFFETIEHGMGVLDTELAAL 419

Query: 377 --GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
                 +L G++AFKL+DT G PLD+ QD+    G+  +D  +F+ A+  QR +ARA   
Sbjct: 420 RAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDVAMARQREQARAAG- 477

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                   K+  +L      T+F GY+ L     +KE R V                  A
Sbjct: 478 ------KFKMQAALDYVGDKTRFDGYEHL----LVKEARVV------------------A 509

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG--IRLQITDVQKKAE 551
           + + G  V    +G    VV D+TPFYAE+GGQ+GD+G    GD   +R  + D QK   
Sbjct: 510 LYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCDLRFVVHDTQKLQA 569

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +F HH  +E G L+    +   +D + R  +  NHS THL+H AL  +LG HV Q GS 
Sbjct: 570 DVFGHHGTLESGSLKVGEIVAAQVDGERRLAVMRNHSVTHLMHKALRLVLGDHVQQKGSL 629

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  D  RFD  H  P++  E+  +E  VN+ I  N     R+M  ++A   GA  L G K
Sbjct: 630 VDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGMGAMMLFGEK 689

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y D VRV+ +        S  LCGGTHV+ TG+I L  IV E  + AGIRR+EA+TG  A
Sbjct: 690 YGDTVRVLDIGT------SRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAVTGLNA 743

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCH 789
            + +  Q+  +  L+  LK        +VE++ E+ R+L+  L   K +      D    
Sbjct: 744 LAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLTQLKAQQAAAQGDALVS 803

Query: 790 KIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTED 845
           +   +   S +++    +D+K L+  +D ++ K+++ +++L   S+E  K  +   V+ D
Sbjct: 804 QAFTIGGTSVLLARMDGLDAKGLREAVDRIKSKLKTAVVLLA--SREGDKVQLAAGVSAD 861

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + +  A DL  ++A+ + GG GGGRP  A +GG    + D A+A   S L++
Sbjct: 862 RVGQIKAGDLVSVAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913


>gi|153006742|ref|YP_001381067.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|205829977|sp|A7HH87|SYA_ANADF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152030315|gb|ABS28083.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 904

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/930 (41%), Positives = 540/930 (58%), Gaps = 73/930 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL FF++  H  +PSSSL+P NDPTL+FTN+GM  FK++FTG+EK  Y  
Sbjct: 1   MKTAAQIRELFLRFFEEKAHRRVPSSSLVPQNDPTLLFTNAGMNQFKDVFTGREKRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+T E   
Sbjct: 61  ATTAQKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTSERWL 120

Query: 119 DLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + + RL  TV+        DEEA++LW +  G+  ++I ++   DNFW+M +TGPCGPC
Sbjct: 121 AISKERLAATVFAGEGTLPWDEEAYRLW-EAQGVPPERIHKLGAKDNFWAMGDTGPCGPC 179

Query: 173 SEIFFDQGECIPGG-------LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           SE+ F QG  IP           G + + +R++EIWNLVFMQFE+        LPK SID
Sbjct: 180 SELHFFQGNDIPCAEEKAGRTCQGVACDCDRWLEIWNLVFMQFERGADGGLTPLPKPSID 239

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSS 282
           TG GLERMA V+Q K +NYDID F+ +I+A E++ G +Y   + ++ V+ RVI DH R++
Sbjct: 240 TGAGLERMAAVVQGKRSNYDIDAFQSIIRAIEKLAGKRYGATDADDDVSMRVIADHARAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +FL+ DG+LPANEGRGYVLRRIMRRA+ + + LG   P +  +  A+  EMG AYPE  +
Sbjct: 300 TFLVGDGVLPANEGRGYVLRRIMRRAIRHGKRLGLERPFLADVCEAVMEEMGGAYPETRE 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL-------SHLGKD---------EILNGDV 386
            +  I +    E+E F +TLD+GL +L+  +       +HLGK           +++G +
Sbjct: 360 NRAFIVKVAGQEEESFRRTLDKGLAILETEMRKAIPPETHLGKPATPPPSAPRPVIDGKL 419

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT G PLD+ + I   RG   +D   F++ + EQ  RAR+   G G      +  
Sbjct: 420 AFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRNMAEQ--RARSEWKGSGEQAVGDLHK 476

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
            +  + G T+F+GY+                            + VKA++  G    +A 
Sbjct: 477 QIASELGETRFLGYE-----------------------APTARAEVKALLANGARAAKAA 513

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G KVEVV   TPFY E+GGQ+GD G     G R+++ D ++   G+  H  +VE G L 
Sbjct: 514 RGDKVEVVTAATPFYGESGGQVGDQGSIAAPGGRVRVEDTRRPVPGLVTHVGVVEEGELA 573

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D + R  +  NHSATHLL  AL   LG HV Q GS + PD LRFD +H +P
Sbjct: 574 VGDLVELAVDDRRRDLIRANHSATHLLQLALRETLGDHVKQAGSIVAPDYLRFDFSHFQP 633

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++  EL +IE  VN+++ +N    T ++  EDA  SGA  + G KY D VRVV +     
Sbjct: 634 LSEEELNAIERRVNELVRENAETETAVLKLEDARQSGAMMIFGEKYGDVVRVVRLG---- 689

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S  LCGGTHV  TG+I    I SE SI AG+RRI A TG +A      + ++L+  A
Sbjct: 690 --PSKELCGGTHVRRTGDIAFFKIGSEESIAAGVRRIVAYTGPQAIELSQREADELRRAA 747

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           +  K     V  ++E+  +  + L+  L  AK K+          +  DV     +   V
Sbjct: 748 ALFKAGAFEVAQKIEQTQKRVKDLERALDEAKGKIASAQSGDLAAQARDVKGAKVLAVRV 807

Query: 805 --DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
             D K L+ + D L+ ++ +G++ L G  ++ KA +L+ VT+DL  R  A +L + +AK+
Sbjct: 808 QGDGKSLRELADKLRDRLGTGVVAL-GAEQDGKAILLVAVTKDLTARLKAGELVKEAAKL 866

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + GG GGG+P +AQ+GG +    ++A+A V
Sbjct: 867 V-GGSGGGKPDLAQAGGSDPAGLEKALAKV 895


>gi|83305847|sp|Q3YSV8|SYA_EHRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 887

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/900 (41%), Positives = 535/900 (59%), Gaps = 65/900 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V  IR  F++FF KNGH+L PSS LI  +DP+L+FTN+GMV FK++FT           +
Sbjct: 7   VGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNANVGTAVS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW  +TKE  L++ 
Sbjct: 67  SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKELALNKD 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM  TGPCGPCSEIF+D GE I
Sbjct: 127 KLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFYDYGEDI 186

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ EE G R+ EIWNLVFMQ+ +++  E   LPK  IDTGMGLER++ V+Q   +
Sbjct: 187 EGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI+ S++ +G     NN + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDINLFKDLIKVSKKQSG---NTNNELAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L Y   LM  + P+L  E     M   YPELI AK LI   L+ E+E 
Sbjct: 304 RIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISILKIEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL + L LL+  L  L    +L GD+AFKLYDT+G P+DI  DI+  +G+   D   
Sbjct: 364 FKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK-FDEQG 422

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +++Q+ R++  HS+        K+W  +KE YG T+F+GY+               
Sbjct: 423 FYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---------- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533
                       + ++  I +  +  E A  G +V V+ D TPFYAE+GGQ GDTG    
Sbjct: 473 ------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKGDTGVFNV 520

Query: 534 AIGDGIRL-------QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            +  G  L       ++ D +K  + +++H  +++ G L     +   ++ + R+ L  N
Sbjct: 521 IVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEKRKNLCAN 580

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH+ L +++   + Q GS ++ D LRFD ++   +T  +L  IED +  +I  N
Sbjct: 581 HSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKMFSLIRNN 640

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            PVVT I + ++AIA GA AL   KY D  VRV+++        S  LC GTHV  TGEI
Sbjct: 641 SPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIG------DSKELCCGTHVRYTGEI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSE+S+  G+RRIEA+TGQ A  +   Q++ L  +A  +K    N++ +++++  
Sbjct: 695 GCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILIQIDKLNR 754

Query: 766 EYRKLQLIHAKRKLQ------LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             ++L     K+KL       +N++ ++  KI  ++F+    S ++S  +  V   + + 
Sbjct: 755 NNQEL-----KQKLSDAYFSVINLQGIATDKIGSIDFL---YSSLNSVPIDVVRKFINEH 806

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + + +IM       +    +I V  +L  +  A D   +  +V+   GGG    +AQ  G
Sbjct: 807 LVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKSKGGGNN-QLAQISG 865


>gi|260222905|emb|CBA32940.1| Alanyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 878

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/916 (40%), Positives = 528/916 (57%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 2   SVADIRKSFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRNYVRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++  AW+LLT  + L  
Sbjct: 62  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRITTN-------DNFWSMAET 166
            +LY TVY ED+EA+ +W+ I   +G + +      +IIRI  N       DNFW MA+T
Sbjct: 122 EKLYATVYQEDDEAYAIWEDIFVKAGWTPERVKQEGRIIRIGDNKGGRYKSDNFWMMADT 181

Query: 167 GPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           GPCGPCSEIF+D G  IPGG PGS  E+G+R+IEIWN VFMQF          LP   +D
Sbjct: 182 GPCGPCSEIFYDHGAHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMDETGAVTPLPAPCVD 241

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285
           TGMGLER+A +LQ   +NY+IDLF  LI+A+ + TG     N  +  RVI DH+R+++FL
Sbjct: 242 TGMGLERLAAILQHVHSNYEIDLFDALIKAASRETGCSDLTNKSL--RVIADHIRATAFL 299

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  L   MG+AYP +   + 
Sbjct: 300 VSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVQVMGAAYPNMASQEA 359

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            I E LR E+ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT+G PLD+  D+ 
Sbjct: 360 RITEVLRVEEERFFETLATGMQILDEALA--GGVKVLPGEVAFKLHDTYGFPLDLSADV- 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           C      +D   F  A+E Q+++ RA     G    +K   +L+       F+GY+ L  
Sbjct: 417 CRENGVEVDSAGFTAAMEAQKAKGRA----AGKFKMDK---ALEYTGAGNTFVGYEHLT- 468

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  S+ + A+   G  V E  +GQ   +V D TPFYAE+G
Sbjct: 469 ----------------------QSAKIVALYADGTAVSELKAGQDGVLVLDTTPFYAESG 506

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G    D    ++ D QK    +F HH  ++ G+LR   ++   +D   R     
Sbjct: 507 GQVGDEGAVFSDAGLFEVGDTQKIKADVFGHHGTLKTGVLRVGDAVTAHVDAAKRAATVR 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHL+H AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  +  
Sbjct: 567 NHSATHLMHKALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTAEQIRQIEAKVNAEVLA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N     R+M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV +TG+I
Sbjct: 627 NAAAQARVMDIESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVHATGDI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  +V E  + AG+RRIEA+TG  A  +L   ++ + + A+ LK     +  R+ +I +
Sbjct: 681 GLFKVVGEGGVAAGVRRIEAVTGANALHYLQDLEDTVGAAAATLKTPVAELGNRLGQIVD 740

Query: 766 EYRKL--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI 820
           + + L  ++   K KL     D       DVN    ++  +   D+K L+  MD L+ K+
Sbjct: 741 QVKALEKEVAALKGKLASAQGDELVSSAVDVNGVKVLAAKLEGADAKTLRDTMDKLKDKL 800

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           ++ +I+L  +  + K  +   VT D   +  A +LA   A  + GG GGG+  MA +GG 
Sbjct: 801 KTAVIVLGAVDGD-KVQIAAGVTNDTTAKVKAGELANFVASQV-GGKGGGKADMAMAGGT 858

Query: 881 NGNKADQAIAGVASFL 896
              K   A+A V +++
Sbjct: 859 EPAKLAGALASVQAWV 874


>gi|313902388|ref|ZP_07835791.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313467319|gb|EFR62830.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 905

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/899 (42%), Positives = 553/899 (61%), Gaps = 45/899 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL FF+++GH ++PSSSL+P +DPTL+FTN+GMV FK++FTG+EK  Y+  TT
Sbjct: 18  AAEIRERFLRFFERHGHTIVPSSSLVPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATT 77

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L + 
Sbjct: 78  AQKCMRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKREAIHFAWTFLTEELGLPRE 137

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           RL+ T++ +D+EAF LW++++G+ A++I+R+   DNFW+M +TGPCGPCSEI +D+GE  
Sbjct: 138 RLWATIFRDDDEAFGLWQEVTGIPAERIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEF 197

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            C        + + +R++EIWNLVFMQF +        LP+ SIDTGMGLER+A+V+Q  
Sbjct: 198 RCDAEVCGIGACDCDRWLEIWNLVFMQFNRDESGRLEPLPRPSIDTGMGLERIASVMQGV 257

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            +N+D DLF+ L++A E +TG  Y+G       RVI DH R+ +FLIADG+LP+NEGRG+
Sbjct: 258 GSNFDTDLFRPLLRAVEDLTGRPYDGGEAGFPFRVIADHARACTFLIADGVLPSNEGRGH 317

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ + R+LG  EP +  L+  +   MG AYPE+ Q    +   +R E+ERF 
Sbjct: 318 VLRRILRRAVRFGRILGLEEPFLYRLVDTVGEVMGDAYPEVRQRADYVRRVIRGEEERFF 377

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLD+G+ +L  V+    +  D +++G+ AF LYDT+G PLD+ +D     GL  +D   
Sbjct: 378 RTLDQGMAILAEVIERARQRGDGLIHGEEAFVLYDTYGFPLDLTEDAAEEAGLR-VDREG 436

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F +A+  QR RAR A  +  G      +  +L ++  AT+F GY+ L       ED    
Sbjct: 437 FERAMAVQRQRARAAREVEEGWDPGSPLARALADEP-ATEFTGYERL-------ED---- 484

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V+ +V++ E  + A +G++V V+ D+TPFYAE GGQ+GDTG    
Sbjct: 485 ------------EGTVRLLVRRDEPADRADAGEEVGVILDRTPFYAERGGQVGDTGWLET 532

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              RL++ D Q    G  +H A V  G ++    +   +D   R  +  NH+ATHLLH A
Sbjct: 533 PRARLEVLDTQPLPGGRILHKARVVEGAVQVGDRVRARVDAARRAAIMRNHTATHLLHAA 592

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS + PD LRFD TH +  T+ +L++IED +N  I + +PV     + 
Sbjct: 593 LKRVLGDHVNQAGSLVAPDRLRFDFTHFEAPTAGQLRAIEDEINQQILRGIPVRWYWTSL 652

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A+ +GA AL G KY + VRVV +     G +S  LCGGTHV ST +I L    +E S+
Sbjct: 653 EEALEAGALALFGEKYGNEVRVVQI-----GDYSLELCGGTHVVSTSDIGLFKFTAEGSV 707

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RR+EA+TG  +  +L  Q+  L  LA  L+V   ++  R+E + E +R+L  QL  
Sbjct: 708 AAGVRRVEAVTGWGSLEYLRRQEAVLDRLAGTLRVPVDDLPARLEALVESHRELERQLRQ 767

Query: 775 AKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L     D    +  ++A V  ++  +   D++ L+   D L+++     ++L G  
Sbjct: 768 LRSRLARQAADGLLEAAPQLAGVRVIAGELPVDDAEVLRETADYLRQRAGEAAVLL-GAR 826

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              +A ++  VT    +R  +A  L    A+ L GGGGGGRP +AQ+GG +  +  +A+
Sbjct: 827 AGGRALLVAAVTPGAQERGLHAGRLVGEVARRL-GGGGGGRPDLAQAGGRDPGRLPEAL 884


>gi|73666779|ref|YP_302795.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|72393920|gb|AAZ68197.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 891

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/900 (41%), Positives = 535/900 (59%), Gaps = 65/900 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V  IR  F++FF KNGH+L PSS LI  +DP+L+FTN+GMV FK++FT           +
Sbjct: 11  VGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNANVGTAVS 70

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW  +TKE  L++ 
Sbjct: 71  SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKELALNKD 130

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM  TGPCGPCSEIF+D GE I
Sbjct: 131 KLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFYDYGEDI 190

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG+ EE G R+ EIWNLVFMQ+ +++  E   LPK  IDTGMGLER++ V+Q   +
Sbjct: 191 EGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAVMQGVHD 250

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI+ S++ +G     NN + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 251 NYDINLFKDLIKVSKKQSG---NTNNELAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 307

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L Y   LM  + P+L  E     M   YPELI AK LI   L+ E+E 
Sbjct: 308 RIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISILKIEEEN 367

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL + L LL+  L  L    +L GD+AFKLYDT+G P+DI  DI+  +G+   D   
Sbjct: 368 FKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK-FDEQG 426

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +++Q+ R++  HS+        K+W  +KE YG T+F+GY+               
Sbjct: 427 FYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---------- 476

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533
                       + ++  I +  +  E A  G +V V+ D TPFYAE+GGQ GDTG    
Sbjct: 477 ------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKGDTGVFNV 524

Query: 534 AIGDGIRL-------QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            +  G  L       ++ D +K  + +++H  +++ G L     +   ++ + R+ L  N
Sbjct: 525 IVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEKRKNLCAN 584

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH+ L +++   + Q GS ++ D LRFD ++   +T  +L  IED +  +I  N
Sbjct: 585 HSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKMFSLIRNN 644

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            PVVT I + ++AIA GA AL   KY D  VRV+++        S  LC GTHV  TGEI
Sbjct: 645 SPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIG------DSKELCCGTHVRYTGEI 698

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSE+S+  G+RRIEA+TGQ A  +   Q++ L  +A  +K    N++ +++++  
Sbjct: 699 GCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILIQIDKLNR 758

Query: 766 EYRKLQLIHAKRKLQ------LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             ++L     K+KL       +N++ ++  KI  ++F+    S ++S  +  V   + + 
Sbjct: 759 NNQEL-----KQKLSDAYFSVINLQGIATDKIGSIDFL---YSSLNSVPIDVVRKFINEH 810

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + + +IM       +    +I V  +L  +  A D   +  +V+   GGG    +AQ  G
Sbjct: 811 LVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKSKGGGNN-QLAQISG 869


>gi|326561060|gb|EGE11425.1| alanyl-tRNA synthetase [Moraxella catarrhalis 7169]
          Length = 893

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/922 (41%), Positives = 535/922 (58%), Gaps = 70/922 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           +SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R  
Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 769 ---------KLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQ 817
                    KL  +HA   L  N++D+   K  IA VN M       D+K L+++ D ++
Sbjct: 756 EKQIERLNQKLASLHA-NSLTDNLKDIHGQKVLIATVNGM-------DNKALRTLSDDMK 807

Query: 818 KKIQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            K+  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  
Sbjct: 808 SKLADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDF 866

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ G  +     + + G+  ++
Sbjct: 867 AQGGATDVANLPKLMTGLTDWI 888


>gi|93006462|ref|YP_580899.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|122415158|sp|Q1QA88|SYA_PSYCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|92394140|gb|ABE75415.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 890

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/914 (41%), Positives = 539/914 (58%), Gaps = 58/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F++FF    H  + SSSLIP NDPTL+FTN+GM  FK  F G E   Y    T 
Sbjct: 8   ADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVTS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I   W+ LT +    +D+
Sbjct: 68  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAIDK 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+T+Y+ D+EAF +W K  G+ +++IIRI  N       DNFW+M +TGPCGPC+E+
Sbjct: 128 NRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTEV 187

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GGLPG+ EE G+RYIEIWN VFMQF +Q       LP  S+DTGMGLER++
Sbjct: 188 FYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTGMGLERIS 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q    NY+IDLF HL+ A+ ++  ++ E     + +VI DH+R+ SFLIADG+ P+N
Sbjct: 248 AIMQGVHGNYEIDLFVHLMDAAAEI--LEIENQQQSSLKVIADHIRAVSFLIADGVTPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        ++  L  EMG+AYPEL   + +IE  ++ E
Sbjct: 306 EGRGYVLRRIIRRAVRHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQKE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F KTL +GL LL   L  L   + L+G+ AFKLYDT+G P+D+  DI   RG+  ID
Sbjct: 366 ETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKLYDTYGFPVDLTADITRERGIV-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ ++ QR RAR       +G  +  + S+ +    T FIGY+ L           
Sbjct: 425 EAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLE---------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-C 533
                       GV+  + A+ Q G   +    G +  +V D+TPFYAE GGQ+G+ G  
Sbjct: 469 ----------EEGVT--IDALYQDGNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGEI 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+  ++ D +K  + I +H+ +V  G + T+ +    +    R   + NHSATHLL
Sbjct: 517 RTASGV-FEVQDTKKSGQAI-IHYGVVTMGDISTKQTADAQVLSSIRAASAKNHSATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  V+Q GS ++ + LRFD ++ KP+++AE+  IE  VN+ I  N P     
Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIEN 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV---EYEDG--GVHSSALCGGTHVSSTGEIMLL 708
           M+ ++A+  GA AL G KY   VRV+++      DG     S  LCGG HV  TG+I +L
Sbjct: 635 MSIDEAMKQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVL 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+TG  A  ++   +++L  LAS LKV +  V  RV  + ++ R
Sbjct: 695 KITSESGIAAGIRRIEAVTGMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754

Query: 769 KL--QLIHAKRKL----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +L  QL   ++K+      N+ D     IA    +   +S +D K ++++MD ++ K+  
Sbjct: 755 ELEKQLERLEQKIASAQAANLLD-DVQTIAGTPVLISTLSGIDGKSIRTLMDDIKSKLPD 813

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L+G  K+++ ++   V + +  +  A D+ R  A  L GG GGG+P  AQ G P  
Sbjct: 814 SVIVLIG-DKDEQLALAASVAKSVTAKVKAGDIIRHLASEL-GGKGGGKPDYAQGGAPKA 871

Query: 883 NKADQAIAGVASFL 896
              +  +  + +++
Sbjct: 872 ANTNAVVNALPAWI 885


>gi|188996094|ref|YP_001930345.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|205830234|sp|B2V709|SYA_SULSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188931161|gb|ACD65791.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 876

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/895 (41%), Positives = 546/895 (61%), Gaps = 51/895 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+   + QK
Sbjct: 9   IRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRAASCQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  ++ + +L 
Sbjct: 69  VFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLEIPKEKLL 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V++ED+EAF++W K  GL   KI R+   DNFWSM +TGPCGP SEI++D+GE   G 
Sbjct: 129 VSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGEKF-GN 187

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
               +E+  RY+EIWNLVFMQ+ +  K     LP  SIDTGMGLER+A+VLQ   +NYD 
Sbjct: 188 PEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVDSNYDT 247

Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           DLFK +IQ +E+V+G +Y  N  + +  RVI DHLR+ +FLI+DG+LPANEGRGYVLRRI
Sbjct: 248 DLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGYVLRRI 307

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ Y + LG  +P +   +  +  +M +AYPELIQ +  I+   +SE+E+F KTL R
Sbjct: 308 IRRALRYGKNLGIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFIKTLKR 367

Query: 365 GLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
            + +L  ++    K+    L G+  FKLYDT+G P+D+M++IL   G    D+I F+  L
Sbjct: 368 SMDILYQMIEQARKENRRHLTGEETFKLYDTYGFPIDLMEEILKDEGFT-FDLIEFHNLL 426

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQ+ RAR  S    S   + ++ +LK K    QF+GY+ L       E+ KVL      
Sbjct: 427 EEQKERARK-SWKSQSKEIKPVYLTLKNKLPENQFVGYETL-----TSENSKVL------ 474

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                      AI++  ++V+ A  G+ +E+V D TPFY E GGQ+GD G   GD    +
Sbjct: 475 -----------AIIKGDQLVDTAKEGEDIEIVLDITPFYPEKGGQIGDRGIIEGDEFLFE 523

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D Q   +G+ VH   V  G ++    +    D + R  +  +H+ATHLLH AL  +LG
Sbjct: 524 VLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKTDKERRENIMRHHTATHLLHAALRNVLG 583

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS ++ + LRFD TH + +T  ELK++E+ VN  I +N  VV + M  E+A+ S
Sbjct: 584 DHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYEEALKS 643

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY D VRV+S      G+ S  LCGGTHV  TG+I    I+SES++ +G RR
Sbjct: 644 GAMAIFEEKYADVVRVIS-----AGI-SKELCGGTHVKRTGDIGYFKILSESAVSSGTRR 697

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRK 778
           IEA+ G +A    + +   +K L+  L   +  ++ RV     +I E+ R+++ +  K  
Sbjct: 698 IEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENLRKKLA 757

Query: 779 L-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           L      LN+ +    K+A V+     +  ++  EL+ + D L++K+   +I++     E
Sbjct: 758 LSNINENLNIIEKEGFKVAYVS-----VENLNPNELREIADHLRQKLGKSVILVASKDAE 812

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           K K + ++ V+++L + + A D+ +  A     G GGGRP  AQ G  + +K  Q
Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASA-ANGSGGGRPDFAQGGINDTSKLSQ 866


>gi|222110972|ref|YP_002553236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|221730416|gb|ACM33236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 874

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/892 (41%), Positives = 520/892 (58%), Gaps = 56/892 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG     N  +  +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSDLTNPSL--KVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP++ + +  I + LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERGV-NVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A QF GY+ L           
Sbjct: 422 EAGFATAMEHQKSTARAAG-------KFKMDRALEYTGAANQFTGYEQL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G       +GQ   VV D+TPFYAE+GGQ+GD G  
Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D QK    ++ HH  +E G L    ++   +D Q R     NHS THL+H
Sbjct: 512 GAGSACFSVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+A+++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVRRTGDIGLFKVVAEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    ++ + L  +L
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745

Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  + K  +   VT D + R  A DL    A  + GG GGG+P MA +GG N
Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855


>gi|325295645|ref|YP_004282159.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066093|gb|ADY74100.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 879

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/902 (42%), Positives = 554/902 (61%), Gaps = 57/902 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+   H  + SS LIP NDPTL+FTN+GMV FK+ F G+EKP ++  T+ QK
Sbjct: 9   IREAFLRFFEDKEHFRVKSSPLIPKNDPTLLFTNAGMVQFKDYFLGKEKPPFKRATSCQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK F L + RLY
Sbjct: 69  CMRAGGKHNDLENVGKTGRHHTFFEMLGNFSFGDYFKKEAIEFAWELVTKVFKLPEDRLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY++D+EAF++W K+ G+  +KI ++   DNFW+M +TGPCGPCSEI++D+GE    G
Sbjct: 129 VSVYEKDDEAFEIWNKLIGIPENKIYKLGEKDNFWAMGDTGPCGPCSEIYYDRGEEFACG 188

Query: 187 LPGSSEEG----ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              + E G    +RY+EIWNLVFMQFE+    +   L   SIDTGMGLER+A+VLQ   +
Sbjct: 189 --ENCEIGKCDCDRYLEIWNLVFMQFERDESGKLTPLAHPSIDTGMGLERIASVLQNVPS 246

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NY+ DL   L++ +  ++G  Y  +  +  + RVI DHLR+ +FLIADG+LP+NEGRGYV
Sbjct: 247 NYETDLLFPLVKWASDLSGTPYGKDEKSSTSMRVIADHLRALTFLIADGVLPSNEGRGYV 306

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + RLLG  +P +   +  +   MG  YPE+++   LI++    E+ERF K
Sbjct: 307 LRRIIRRASRHGRLLGIDKPFLFEGVDEVLNIMGDTYPEIVENGRLIKKVTLKEEERFSK 366

Query: 361 TLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           TL+RGL +   ++  L   GKD I+ G+ AFKLYDT G PLD++ ++     L  +D+  
Sbjct: 367 TLERGLYIFAEIIDKLRNEGKD-IIPGEEAFKLYDTFGFPLDLILEVANDENLK-VDVSG 424

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE--KYGATQFIGYDLLRGSKFMKEDRKV 475
           F + L EQ+ RAR    G   G  + I   L++  +   + FIGYD L G          
Sbjct: 425 FEKLLAEQKERARKAWKG---GVQKVISPELQKLSEESPSIFIGYDHLEG---------- 471

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  I++ G ++EEA  G++V V+ D+TPFY E GGQ+GDTG   
Sbjct: 472 -------------IGKVTGILKDGRLIEEAKEGEEVTVILDKTPFYPEKGGQVGDTGIIE 518

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+    ++ D Q   E +  H  +V++  ++    +   ++ + R+ +   H+ATHLLH 
Sbjct: 519 GNNCYCEVLDTQNITENLIGHKVVVKKEKVKVGDIVNAIVNEERRKAIMRAHTATHLLHK 578

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS + PD LRFD TH +  T  EL++IE+ V + + +N PV    M+
Sbjct: 579 ALREVLGNHVKQAGSLVLPDRLRFDFTHFEAPTEEELQTIEETVYNWVLKNYPVKIEEMS 638

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++AI  GA AL G KY D VRVV V        S  LCGGTHV  +G+I    ++SESS
Sbjct: 639 YDEAIERGAIALFGEKYGDVVRVVDVG-----GVSVELCGGTHVERSGDIGFFKLISESS 693

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G RRIEA+ G+ A  ++  ++  +K L S L+  +  ++ +VE++ EE +  +    
Sbjct: 694 ISSGTRRIEAVVGKEAFKYIEEKEALIKKLRSSLQSPEEQLLQKVEKLKEELKAKEKELE 753

Query: 776 KRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           + K +L        VED     I  +  ++  +     KEL  + D ++ K ++  +M+V
Sbjct: 754 RIKKKLATAEIDQIVEDAPI--INGIKVVTAKLEGFGGKELAEIADVIRNKAKTAAVMIV 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           GI K+ KAS+LI +T+DL DRF A ++ R  A +L  G GGGRP MAQ G  N +K ++A
Sbjct: 812 GI-KDGKASLLIALTKDLTDRFKAGEIIREIAPIL-EGRGGGRPDMAQGGVQNLSKLEEA 869

Query: 889 IA 890
            +
Sbjct: 870 FS 871


>gi|258545023|ref|ZP_05705257.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258519721|gb|EEV88580.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 876

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/895 (42%), Positives = 530/895 (59%), Gaps = 61/895 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL++F ++GH+++ SSSL+P NDPTL+FTN+GMV FK+IFTG E   Y+  T
Sbjct: 8   STAEIRRAFLDYFAEHGHKIVHSSSLVPGNDPTLLFTNAGMVQFKDIFTGSESRDYKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L  
Sbjct: 68  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTQVFGLPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            +L +TVY ED+EAF +W+   GL  DKIIRI          +DNFW+M +TGPCGPCSE
Sbjct: 128 EKLCVTVYHEDDEAFAIWRDKVGLPEDKIIRIGDKPGKAKYESDNFWAMGDTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS EE G+R+IEIWN+VFMQFE+        LP+ SIDTGMGLER+
Sbjct: 188 IFYDHGPDVWGGPPGSPEEDGDRFIEIWNIVFMQFERDASGTMKPLPRPSIDTGMGLERI 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+ID+F++LI A+ + TG        +  +VI DH+R++ FL+ DG+LP 
Sbjct: 248 AAVLQGVHSNYEIDIFRNLIAAAAEATGCDDLAQTSL--KVIADHIRATVFLMVDGVLPG 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRIMRRA+ +   LG  +P    L+  L  EMG AYPE+++A+  I + +R 
Sbjct: 306 NEGRGYVLRRIMRRAIRHGYKLGQNQPFFYKLVAPLVAEMGEAYPEIVEAEARITDAVRR 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL+ GL +L+  L  +   EI  G+  FKLYDT+G P+D+  DI   RGL  +
Sbjct: 366 EEERFAQTLEAGLEVLEKALGEMRGTEI-PGETVFKLYDTYGFPVDLTADIARERGLT-L 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLLRGSKFMK 470
           D+  ++ A+ EQR RA+A              F   +K    G T F GY+   G     
Sbjct: 424 DMDGYDAAMAEQRERAKAAGK-----------FDAAQKLDISGKTAFDGYEKESG----- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             S+ +  I   G+ V +  +G +  VV D+TPFY E+GGQ+GD
Sbjct: 468 ------------------SAQIMQIFADGKAVTKLDAGARGVVVLDRTPFYGESGGQVGD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G         ++ D QK+ +  F+H   VE+G +    +    ID + R  +  +HSAT
Sbjct: 510 SGTLRTTSGVFRVEDTQKQGDA-FLHIGHVEQGDISVGETAQAEIDRERRAAIKRHHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL + LG+HV Q GS +     RFD +H K +++A++  +E  +N  I  N PVV
Sbjct: 569 HLLHKALRSTLGTHVQQKGSLVDERRTRFDFSHDKALSAADIAQVEAMMNAQILGNAPVV 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+R+ A   GA AL G KY D VRVVS+  +DG   S  LCGGTHV   GEI L  +
Sbjct: 629 IEQMSRDAAQKKGAMALFGEKYGDVVRVVSMG-DDG--FSIELCGGTHVGRLGEIGLAKV 685

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VS+ ++ AG+RRIE + G  A  HL   D  L   A+ LK    ++  R+  + ++ + L
Sbjct: 686 VSQGAVSAGVRRIEVVCGLAALEHLTHSDALLTESAALLKTDGEHLPERISALQQQLKTL 745

Query: 771 QLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
           +      K QL    D    +I  +N    +  +   +D+  L+   D L+ ++ + +++
Sbjct: 746 EKEVQTLKRQLAQGGDGGGAEIQVINGWKTLALQRDGIDNATLRDTADQLRDRLGADVVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  +  +   + LIV      +  +A ++ R  A V  GG GGGRP  AQ+GG N
Sbjct: 806 IGSVDDD--TARLIVSVGKTANGLHAGNIIRELA-VHIGGKGGGRPDFAQAGGKN 857


>gi|121594335|ref|YP_986231.1| alanyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|205829967|sp|A1W7D0|SYA_ACISJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120606415|gb|ABM42155.1| alanyl-tRNA synthetase [Acidovorax sp. JS42]
          Length = 874

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/892 (41%), Positives = 520/892 (58%), Gaps = 56/892 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG     N  +  +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSDLTNPSL--KVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP++ + +  I + LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERGV-NVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A QF GY+ L           
Sbjct: 422 EAGFATAMEHQKSTARAAG-------KFKMDRALEYTGAANQFTGYEQL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G       +GQ   VV D+TPFYAE+GGQ+GD G  
Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D QK    ++ HH  +E G L    ++   +D Q R     NHS THL+H
Sbjct: 512 GAGSACFTVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+A+++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVRRTGDIGLFKVVAEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    ++ + L  +L
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745

Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  + K  +   VT D + R  A DL    A  + GG GGG+P MA +GG N
Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855


>gi|317154429|ref|YP_004122477.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944680|gb|ADU63731.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 879

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/905 (41%), Positives = 531/905 (58%), Gaps = 52/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FLE+FQ+N H ++ SS LIP +DPTL+FTN+GMV FK +F GQEK  Y   T
Sbjct: 2   HAAEIRQRFLEYFQENNHAIVESSPLIPKDDPTLLFTNAGMVQFKRLFLGQEKREYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  L +
Sbjct: 62  TSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRYCWQFLTEELKLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            RLYIT+Y +D+EA +LW+K++G+  ++I R+   DNFWSM +TGPCGPCSE+ FDQGE 
Sbjct: 122 DRLYITIYKDDDEAGELWQKVAGVPIERIYRLGEKDNFWSMGDTGPCGPCSEVHFDQGEH 181

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             C P    G   + +RY+EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V Q 
Sbjct: 182 VGCGPECGIGKC-DCDRYLEIWNLVFMQYDQAEDGTRTPLPRPSIDTGMGLERIAAVCQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ DLF+ +I+ + ++ G+KY  N  ++   +VI DH R+ +FLI D +LP+NEGR
Sbjct: 241 VASNYETDLFQSIIRYTAELAGVKYRENQEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +L+G TEP +      +  +MG  + EL  +K  + E +R E+E 
Sbjct: 301 GYILRRLIRRACRFGKLMGLTEPFLWKTASKVVDDMGGHFSELRDSKEFMIEVVRGEEEG 360

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD+GL +L+  L+ L   K  I+ GD AF+LYDT+G P+DI++D+   +G++ +D 
Sbjct: 361 FAKTLDKGLDMLEAELAELTAAKAAIVPGDTAFRLYDTYGFPIDIVRDVAERQGMS-VDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  ++EQ+SR++A   G G      ++ +L E+   + F GY+ +            
Sbjct: 420 PGFDALMQEQKSRSKAAWKGSGDKDVAAVFHTLLEQGITSGFTGYETMADQ--------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S I   +   G +VE   +G    VV   TPFY E+GGQ GDTG   
Sbjct: 471 -------------SEITHVLSPAGAVVERLAAGDTGWVVTRSTPFYGESGGQTGDTGEIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R  +TD  K ++ +  H   + +G L+   S+ LT+D   R     NH+ THLLH 
Sbjct: 518 ASSGRGAVTDTVKPSQSLTAHKVEMAQGELKPGNSVFLTVDRGQRLATMRNHTVTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H  Q GS + PD LRFD TH K +T  E+  +E  VN  I   +PV   +M+
Sbjct: 578 ALQKVLGDHARQAGSLVGPDRLRFDFTHIKGLTVEEIGRVETLVNQSILDAIPVSREVMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A   GA AL G KY D V V+ V     GV S   CGGTH+ +TG      IVSES 
Sbjct: 638 IEQAQTKGATALFGEKYGDTVSVIEVP----GV-SMEFCGGTHLDNTGIAGSFVIVSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA TG  A ++   +       +S LK     +  RV  + ++ + +    A
Sbjct: 693 VAAGIRRIEAATGGNAIAYFNERRAAAAEASSMLKAQPAELPARVRALQQQVKDM----A 748

Query: 776 KRKLQLNVEDLS---------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   QL     S           +I  V  ++  +   D   +   MDAL+ K+ S I+ 
Sbjct: 749 REMKQLQTRLASGTGRDMLAEAQQIGGVTVLAVEVEAPDMNVMLEQMDALRSKLPSAIVC 808

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           LV    + K SV + VT+DL  RF A +L + ++A+V   GGGGGRP +A++GG + +  
Sbjct: 809 LVAGHADGKVSVALSVTKDLHGRFKAGELIKPVAAEVG--GGGGGRPDLARAGGTDASGI 866

Query: 886 DQAIA 890
             A+A
Sbjct: 867 KNALA 871


>gi|323699014|ref|ZP_08110926.1| alanyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458946|gb|EGB14811.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 879

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/908 (41%), Positives = 547/908 (60%), Gaps = 58/908 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FLE+F++NGH ++ SS L P +DP+L+FTN+GMV FK +F GQEK  Y   T
Sbjct: 2   KANEIRQRFLEYFERNGHTIVESSPLTPKDDPSLLFTNAGMVQFKKLFLGQEKRDYIRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  LD+
Sbjct: 62  TAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFCWQFLTEELKLDK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            RLYIT+Y +D+EA +LW+K++G+  ++I R+   DNFWSM +TGPCGPCSE+ +DQGE 
Sbjct: 122 SRLYITIYKDDDEAGELWRKVAGVPEERIYRLGEKDNFWSMGDTGPCGPCSEVHYDQGEE 181

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             C P    G   + +R++EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V+Q 
Sbjct: 182 VGCGPNCGIGKC-DCDRFLEIWNLVFMQYDQAEDGTRTNLPRPSIDTGMGLERIAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ DLF+ +I+ +  + G+KY  +  ++   +VI DH R+ +FLI D +LP+NEGR
Sbjct: 241 VHSNYETDLFQSIIKYTADLAGVKYRESEEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +L+G T   +      +  +MG  Y EL + +  + E +R E+E 
Sbjct: 301 GYILRRLIRRAYRFGKLMGLTGTFLWKTASKVIDDMGGHYKELEETRNFMVEVVRGEEES 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD+GL +L+  L+ L K    I+ G+  FKLYDT+G P+DI++D+   +G+ G+D 
Sbjct: 361 FAKTLDKGLEMLEEELAELKKAGAAIVPGETTFKLYDTYGFPIDIVRDVAEQQGM-GVDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ+ R++A   G G      ++ +L E+   ++F GY+ +            
Sbjct: 420 AEFDKFMQEQKQRSKAAWKGSGEKDVASVFQTLLEQDVTSEFSGYETMADQ--------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+I   +  +GE+V+E  +G+   +V + TPFY E+GGQ+GDTG   
Sbjct: 471 -------------SAIAYVLTPEGEVVDELKAGESGWLVAEVTPFYGESGGQVGDTGAIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  + D  K ++ +  H  +V  G+L+   +  L +D   R     NH++THLLH 
Sbjct: 518 ARNGKADVLDTVKPSKNLTAHKIVVSEGVLKPGDAAFLNVDRSQRLATMRNHTSTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H  Q GS + PD LRFD TH K ++  E+  +E  VN  I + +PV   +M+
Sbjct: 578 ALQKVLGDHAKQAGSLVGPDRLRFDFTHIKGLSPEEIAEVEKLVNQAIFEAIPVTREVMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A GA AL G KY D V V+ V     GV S   CGGTH+ +TG      I SES 
Sbjct: 638 IEAAQAKGATALFGEKYGDTVSVIEVP----GV-SMEFCGGTHLDNTGIAGSFVITSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQ 771
           + AGIRRIEA TG  A + L  + E      + LK    ++  +V ++ ++     R+++
Sbjct: 693 VAAGIRRIEAATGHNAVAWLNERREAASEAGAMLKAQPADLPKKVRDLQQQVKDMNREMK 752

Query: 772 LIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---MDALQKKIQS 822
            + AK      R +   VE+L+  K+  V        +VD+  +  +   MDAL+ K+ S
Sbjct: 753 SLQAKLASGAGRDMMSEVEELNGVKVLAV--------KVDAPNMGVMLEQMDALRSKLPS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+I L+   ++ K SV + VT+DL  RF A DL +  A  + GGGGGGRP +A++GG N 
Sbjct: 805 GVICLIAPHEDGKVSVALSVTKDLHSRFKAGDLIKPVAGEV-GGGGGGRPDLARAGGSNP 863

Query: 883 NKADQAIA 890
              D+A+A
Sbjct: 864 EGIDKALA 871


>gi|158521281|ref|YP_001529151.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|205830076|sp|A8ZY67|SYA_DESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158510107|gb|ABW67074.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 876

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/903 (41%), Positives = 534/903 (59%), Gaps = 46/903 (5%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67
           R TFL++F+  GH ++ SSSL+P  DPTL+F N+GMV FK +F G+EK  Y   TT QKC
Sbjct: 7   RKTFLDYFENQGHRVVRSSSLVPQADPTLLFVNAGMVQFKRVFMGEEKRDYTTATTSQKC 66

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
           VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAWDLL   + L + +L +
Sbjct: 67  VRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKERAIELAWDLLLNGYKLPEDKLSV 126

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
           +V+ ED+EAF +WK   GL+  +I R+   DNFWSM +TGPCGPCSEI+ D+GE    G 
Sbjct: 127 SVFHEDDEAFSIWKDRIGLAESRIARLGEKDNFWSMGDTGPCGPCSEIYMDRGEKYGCGR 186

Query: 188 PGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           P  +   + +R++EIWN+VFMQ+ +Q   E   LP  SIDTGMGLER+  V+Q++  NY+
Sbjct: 187 PDCAPGCDCDRFMEIWNMVFMQYNRQASGELTPLPHPSIDTGMGLERICAVIQDRDTNYE 246

Query: 246 IDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
            DLF  +I+  E  +G  Y    +  V  +VI DH R+++FLI DG+LP+NEG+GYVLRR
Sbjct: 247 TDLFIPIIRGIEAASGKTYGQAPDMDVCMKVIADHSRAAAFLIGDGVLPSNEGKGYVLRR 306

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ Y R LG T P +      +   M   YPEL +    I   L +E+ RF +TLD
Sbjct: 307 ILRRAIRYGRQLGLTRPFLSRTAGTVFEVMAEPYPELKENASFITNVLENEEVRFSETLD 366

Query: 364 RGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
            GL LL   L  +    + ++ G V FKLYDT+G P+DI++D++  + + G+D+  F+ A
Sbjct: 367 NGLRLLSETLDGMAAKGESVIPGGVIFKLYDTYGFPVDIVRDVVREK-MIGLDMEGFDAA 425

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ++++R+    +      + + +L  K   T F+GY  L                  
Sbjct: 426 MAEQKAKSRSV---VDFSKQPEAYRNLSAKGMKTGFVGYAGL------------------ 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V A+V  G  +E A +GQ++E+V D TPFY  +GGQ+GD G    DG+ +
Sbjct: 465 -----AAQATVLALVNGGSELETATAGQEIEIVTDTTPFYGASGGQMGDVGVITADGLEI 519

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD  K   G+ +H   V  G ++   ++ L +D   RR  + NH+ATHLLH AL  I+
Sbjct: 520 TVTDTIKDPTGLVIHKGQVASGTVKKGQTISLAVDEDRRRATAANHTATHLLHAALGGIV 579

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS ++PD +RFD TH   +  A L  IE  VND I +N  V    M+ + A+ 
Sbjct: 580 GDHVKQAGSMVSPDRMRFDFTHFSMLDRATLDRIEVFVNDRIRENRAVTISEMSMDQAME 639

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY D VRVV+V+    GV S  LCGGTH   TG+I L  I+SE+S+ +G+R
Sbjct: 640 QGATALFEEKYGDTVRVVAVD----GV-SKELCGGTHAQRTGDIGLFKILSEASVASGVR 694

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG  A + +  Q   L   A  LK S   +  R++++  E R +    A  K  L
Sbjct: 695 RIEAVTGAGAVAFVQEQMGILAEAAGMLKESPAALAARIQKLLAESRTMAKEIAGLKTSL 754

Query: 782 NVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
               +   K  D      V  ++  ++  +   L+ + D L+ K+ SG+++L G + + K
Sbjct: 755 ATASMEGPKSDDAKTLNGVKVIARTVTADNPAALRDLADRLKDKLGSGVVVL-GAAADGK 813

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           A +++ V+ DL  RF A D+ R  A  + GG GGGRP MAQ+GGP     + AI      
Sbjct: 814 AFLIVSVSRDLTGRFKAGDIVR-EAAAVVGGKGGGRPDMAQAGGPQPEHLEAAIQKACDM 872

Query: 896 LKK 898
           + K
Sbjct: 873 IGK 875


>gi|325204570|gb|ADZ00024.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 874

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------TER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQI------EADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
            K
Sbjct: 856 GK 857


>gi|326567519|gb|EGE17634.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 893

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/922 (41%), Positives = 533/922 (57%), Gaps = 70/922 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ ++ R  
Sbjct: 696 VSEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 769 ---------KLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQ 817
                    KL  +HA   L  N++D+   K  IA VN M       D+K L+++ D ++
Sbjct: 756 EKQIERLNQKLASLHA-NSLTDNLKDIHGQKVLIATVNGM-------DNKTLRTLSDDMK 807

Query: 818 KKIQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            K+  GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  
Sbjct: 808 SKLADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDF 866

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ G  +     + + G+  ++
Sbjct: 867 AQGGATDVANLPKLMTGLTDWI 888


>gi|71908916|ref|YP_286503.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|83305844|sp|Q47AU8|SYA_DECAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71848537|gb|AAZ48033.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB]
          Length = 871

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/907 (42%), Positives = 536/907 (59%), Gaps = 56/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 4   SEIRQQFLDFFASKGHQIVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ + L + +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVYKLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY ED+EA+ +W K  G+  +++IRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LTVTVYAEDDEAYDIWTKEIGVPVERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE   GG PGS EE G+R+IEIWN VFMQF +        LPK S+DTGMGLER++ V
Sbjct: 184 DHGEKYWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERVSAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           LQ    NY+IDLF+ L++A+ + T     +  ++   +V+ DH+R+ SFL+ADG++P NE
Sbjct: 244 LQGVHANYEIDLFQALLKAAARETSDADLDSPSL---KVLADHIRACSFLLADGVIPGNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL Q +  I  TL+ E+
Sbjct: 301 GRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGMAYPELGQNQAKIVATLKQEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           +RF +T++ G+ +L+G L  LG+  + NGD AFKL+DT+G PLD+ QDI C      +D 
Sbjct: 361 DRFFETIEHGMAILEGELKSLGEGGVFNGDTAFKLHDTYGFPLDLTQDI-CREHKITVDA 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F+ A+  Q+ +ARA           K+  +L+    AT F GY  L            
Sbjct: 420 AAFDAAMARQKEQARAAG-------KFKMATNLEYDGPATTFHGYAALE----------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+ + G  V +   G+   VV D TPFYAE+GGQ+GD G   
Sbjct: 462 ------------YKANVLALYKDGIAVNQLNEGEMGVVVLDDTPFYAESGGQVGDCGALQ 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                  + D QK    +F HH +V+ G +     +   +D Q R+++  NHSATHLLH 
Sbjct: 510 SVHGIFAVEDTQKIQATVFGHHGVVKTGTITVGNGVAAKVDVQARQRIMRNHSATHLLHK 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD  RFD  H++P+T  E++ +E+ VN  I  N+   TR++ 
Sbjct: 570 ALREVLGDHVQQKGSQVDPDKTRFDFVHNQPMTDEEIRRVENIVNAEILANVATETRVLP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I +E  
Sbjct: 630 IAEAQKLGAMMLFGEKYGDDVRVLDIG------SSRELCGGTHVSRTGDIGLFSITAEGG 683

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RR+EA+TG  A +++   +  L  +A  LKV   +V GRV  + ++ +KL  +L 
Sbjct: 684 VAAGVRRVEAVTGDNALAYMQDMESALGGVAGTLKVLPKDVHGRVLAVLDQVKKLERELA 743

Query: 774 HAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL     D       D+     ++  +   D   L+  MD L+ K++S  I+L  +
Sbjct: 744 ALKGKLASAQGDDMLSNAVDIKGAKVLAATLEGADVNALRETMDKLKDKLKSAAIVLASV 803

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A+A
Sbjct: 804 A-DGKVTLIAGVTADLTGKVKAGELVNLVAQQI-GGKGGGRPDMAQAGGTQPENLPAALA 861

Query: 891 GVASFLK 897
            VA +++
Sbjct: 862 SVAGWVE 868


>gi|332160302|ref|YP_004296879.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664532|gb|ADZ41176.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 838

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/878 (43%), Positives = 541/878 (61%), Gaps = 62/878 (7%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AI  AW+LLT E  F+L + +L++TVY+ D+EA+++W    G+  ++IIRI
Sbjct: 61  SFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+EE G+RYIEIWN+VFM
Sbjct: 121 GDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  +VTG     
Sbjct: 181 QFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           +  +  RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 SKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L  D  L+G+ 
Sbjct: 299 APLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLTGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G+     I  
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRV 415

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  A+QF GYD +                          + V A+ + GE V+E  
Sbjct: 416 D-----SASQFSGYDHVH-----------------------QQATVTALFRNGEAVDEIH 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G++  VV +QTPFY E+GGQ+GDTG          + D QK  + I  H   +  G LR
Sbjct: 448 EGEEAVVVLNQTPFYGESGGQVGDTGELKNATATFAVADTQKYGQAIG-HLGQLAHGTLR 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              S+   ID   R ++ +NHSATHLLH AL   LG HV+Q GS +    LRFD +H + 
Sbjct: 507 VNHSIDAQIDAARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VRV+++     
Sbjct: 567 MKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVRVLTM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  Q + L+ +A
Sbjct: 622 GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
             +K    N+  +V  + +      R+LQ +  ++  Q +    S  K+  VN +  ++S
Sbjct: 682 HLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKL--VNGVKLLVS 739

Query: 803 EVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARL 858
           ++D+ E   L++++D L+ ++ S II+L  I+ + K S+++ VT+DL  +  A +L A +
Sbjct: 740 QLDNVEPKMLRTMVDDLKNQLGSAIIVLATIA-DDKVSLIVGVTKDLTGKVKAGELIADI 798

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + +V  GG GGGRP MAQ+GG N      A+A V +++
Sbjct: 799 AQQV--GGKGGGRPDMAQAGGTNVQALPSALASVEAWV 834


>gi|326577502|gb|EGE27382.1| alanyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 893

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/918 (41%), Positives = 537/918 (58%), Gaps = 62/918 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  I AG+RRIEAITG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 ISEQGISAGVRRIEAITGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKTLRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPNGNKADQAIAGVASFL 896
             +     + + G+  ++
Sbjct: 871 ATDVANLPKLMTGLTDWI 888


>gi|317122060|ref|YP_004102063.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315592040|gb|ADU51336.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 905

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/886 (42%), Positives = 537/886 (60%), Gaps = 47/886 (5%)

Query: 18  NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDL 77
           +GH ++PSSSLIP +DPTL+FTN+GMV FK++FTG+EK  Y+  TT QKC+RAGGKHNDL
Sbjct: 32  HGHTIVPSSSLIPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATTAQKCMRAGGKHNDL 91

Query: 78  DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAF 137
           +NVG+T RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L + RL+ T+Y ED+EAF
Sbjct: 92  ENVGKTARHHTFFEMLGNFSFGDYFKRDAIHFAWTFLTEELGLPKERLWATIYREDDEAF 151

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CIPGGLPGSSEEG 194
           +LW++++G+ A +I+R+   DNFW+M +TGPCGPCSEI +D+GE   C        + + 
Sbjct: 152 QLWQEVTGIPASRIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEFRCEAETCAIGACDC 211

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
           +R++EIWNLVFMQF +        LP+ SIDTGMGLER+A+V+Q   +N+D DLF+ LI+
Sbjct: 212 DRWLEIWNLVFMQFNRDETGRMEPLPRPSIDTGMGLERIASVMQGVASNFDTDLFRPLIR 271

Query: 255 ASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
           A E++TG +Y EG      RVI DH R+ +FLIA+G+LP+NEGRG+VLRRI+RRA+ + R
Sbjct: 272 AVEELTGRRYEEGEPGFPFRVIADHARACTFLIAEGVLPSNEGRGHVLRRILRRAVRFGR 331

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           +LG  EP +  L+  +   MG AYPE+ Q    +   +R E+ERF +TLD+G+ +L  V+
Sbjct: 332 ILGIQEPFLYRLVDTVGEVMGGAYPEVRQRADYVARVIRGEEERFFRTLDQGMAILAEVI 391

Query: 374 --SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR- 430
             +    D ++ G+ AF LYDT+G PLD+  D     GL  +D   F QA+  QR RAR 
Sbjct: 392 ERARARGDGVIRGEEAFVLYDTYGFPLDLTVDAAEEAGLR-VDREGFEQAMAVQRQRARA 450

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
           A  +  G      +  +L ++  AT F GY+ L       ED                  
Sbjct: 451 AREVAEGWDPGSPLALALADEP-ATVFTGYERL-------ED----------------EG 486

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            V+ +V+  + VE A +G++V VV D+TPFYAE GGQ+GDTG     G RL++ D Q   
Sbjct: 487 TVRLLVRGDQPVERARAGEEVGVVLDRTPFYAERGGQVGDTGWLEAPGARLEVLDTQPLP 546

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G F+H A V  G +     +   +D   R  +  NH+ATHLLH AL  +LG HV+Q GS
Sbjct: 547 GGRFLHKARVVEGTVTVGDRVQGRVDAARRAAIMRNHTATHLLHAALKRVLGDHVNQAGS 606

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            + PD LRFD TH +  T  +L++IED +N +I   +PV     + E+A+ +GA AL G 
Sbjct: 607 LVAPDRLRFDFTHFEAPTPDQLRAIEDEINGVILAGVPVRWYWTSLEEALEAGAMALFGE 666

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           KY   VRVV +     G +S  LCGGTHV+ST +I L    +E S+ AG+RR+EA+TG  
Sbjct: 667 KYGREVRVVQI-----GDYSLELCGGTHVASTSDIGLFKFTAEGSVAAGVRRVEAVTGWS 721

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSC 788
           +  +L  ++  L+ LA  L+V   ++  R+E + E +R L  QL   + +L     D   
Sbjct: 722 SLEYLRQREAVLQRLAGTLRVPVDDLPERLEALVEAHRDLERQLRQLRGRLARQAADGLL 781

Query: 789 HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            +      +  I+ E+   D++ L+   D L+++     ++L G     +A ++  +T  
Sbjct: 782 AEAPVAAGVRVIVGELPVDDAEVLRETADYLRQRAGEAAVLL-GARSGDRALLVAAITPG 840

Query: 846 LLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAI 889
              R   +   RL   V    GGGGGGRP +AQ+GG    +  +A+
Sbjct: 841 AQQR--GLHAGRLVGDVARRVGGGGGGRPDLAQAGGREPGRLAEAL 884


>gi|296313800|ref|ZP_06863741.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839624|gb|EFH23562.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 873

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/916 (42%), Positives = 541/916 (59%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TTELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L  +   T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYEGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFLKK 898
           +K  + +A V  ++K+
Sbjct: 856 DKLPEMLASVEGWVKE 871


>gi|261392163|emb|CAX49673.1| alanyl-tRNA synthetase (alanine--tRNA ligase; AlaRS) [Neisseria
           meningitidis 8013]
          Length = 874

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/902 (42%), Positives = 531/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------TER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQI------EADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
            K
Sbjct: 856 GK 857


>gi|225849840|ref|YP_002730074.1| alanyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645058|gb|ACO03244.1| alanyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 878

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/897 (40%), Positives = 538/897 (59%), Gaps = 44/897 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +FL +F++ GH  + S+S+IP  DPTL+F N+GMVPFKN+F G E+  Y+   + 
Sbjct: 7   NQIRESFLRYFEERGHTRVKSASIIPETDPTLLFVNAGMVPFKNVFLGLEEKPYKRAVSC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK  R  GKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+  ++ + +
Sbjct: 67  QKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKREAIQFAWEYLTEVLEIPEEK 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V++ED+EAF++W K+ GL  +KI R+   DNFWSM ETGPCGPCSEI++D+GE   
Sbjct: 127 LLVSVFEEDDEAFEIWNKVIGLPEEKIHRLGVEDNFWSMGETGPCGPCSEIYYDRGEAFG 186

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
               GS E+  RY+E+WNLVFMQ+ +        LPK +IDTGMGLER+A+VLQ   +NY
Sbjct: 187 NPELGSPEDI-RYLEVWNLVFMQYNRDKDGRLTPLPKPNIDTGMGLERIASVLQGVNSNY 245

Query: 245 DIDLFKHLIQASEQVTGMKYE-----GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + DLF  LI+ ++ V+G  Y+       N V  RVI DHLR+ +FLI+DG+ P+NEGRGY
Sbjct: 246 ETDLFMPLIEFAQSVSGKSYDPEDPGSENTVAMRVIADHLRAITFLISDGVFPSNEGRGY 305

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ Y   LG   P +   +  +   M   YPELI  +  I+  ++SE+E+F 
Sbjct: 306 VLRRILRRALRYGMELGIERPFLFEGVDVVVDIMKEPYPELIGNRSFIKNLVKSEEEKFI 365

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTL +GL +L  ++    K+    + G  AF LYDT+G P+D+++DI    G  G+DI  
Sbjct: 366 KTLRKGLEILYDIIQKAKKEGRNHITGKEAFLLYDTYGFPVDLLEDIARDNGF-GVDIAE 424

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LEEQ+ RARA S    +   + ++  LK K     F+GY+ L       +D ++L 
Sbjct: 425 YYKLLEEQKERARA-SWKSQAKEIKPVYLELKNKLPENVFVGYERLE-----VDDAQIL- 477

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                           +++++   V+    G+  E+V D TPFY E GGQ+GD G   GD
Sbjct: 478 ----------------SVLKEDREVDTLHEGETGEIVLDVTPFYPEKGGQVGDRGIIEGD 521

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G    + D Q   EGI VH   V  G ++   ++   +D   R  +  +H+ATHLLH AL
Sbjct: 522 GFLFDVVDTQTPVEGIIVHRGKVIHGTVKKGETVSAKVDKDTRLDIMRHHTATHLLHAAL 581

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + PD LRFD TH + +T  ++K +E+ VN+ I +N PV+ + M  +
Sbjct: 582 RNLLGDHVKQAGSLVHPDYLRFDFTHFESLTDEDIKRVEELVNEEIMKNEPVICKEMPYD 641

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +AI SGA A+   KY D VRV+S      G+ S+ LCGGTHVS TG+I    I+SE+++ 
Sbjct: 642 EAIKSGAIAIFDEKYGDTVRVIS-----AGI-STELCGGTHVSRTGDIGYFKIISETAVA 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLI 773
           +G RRIEA+ G++A    + +   ++++   L   +  ++ ++E    ++ E  R+++ I
Sbjct: 696 SGTRRIEAVAGRKAVERGLREHFLIENVKRALTAKEDEIIDKIETLKLKLKEAQREIENI 755

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K  +    + L+  +   +      +  +   +L+ + D  + K+   ++M+  + KE
Sbjct: 756 KKKSVVDRITDILTVEEKEGIKIAYGSVEGLQPNDLRDLADVARSKLGRSVVMIASVDKE 815

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           K K + ++ V++DL DR  A ++ +  A  L GG GGGRP MAQ GG   +K  +A 
Sbjct: 816 KNKVNFIVAVSKDLTDRIKAGEIVKKVAPAL-GGKGGGRPDMAQGGGTEPSKLKEAF 871


>gi|86160202|ref|YP_466987.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496877|sp|Q2IG40|SYA_ANADE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85776713|gb|ABC83550.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 905

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/938 (39%), Positives = 541/938 (57%), Gaps = 82/938 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F  +F+++GH  + SSSL+P NDPTL+FTN+GMV FK++FTG+E+  Y   T
Sbjct: 5   TAAEIRELFQRYFEEHGHRRVASSSLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T      +
Sbjct: 65  TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKADAIAWAWELVTSPAWLGI 124

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            + RL  TV+        DEEAF+LW K  G+  ++I ++   DNFW+M +TGPCGPCSE
Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELW-KAQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGG-------LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           + + QG  +P           G + + +R++EIWNLVFMQFE+        LPK SIDTG
Sbjct: 184 LHYFQGNDVPCAEEQAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
            GLER+A V Q K +NYD DLF+ +I A E ++  +Y+   ++ V+ RVI DH R+++FL
Sbjct: 244 AGLERLAAVAQGKRSNYDTDLFRSIIHAVEGLSDKRYDAASDDGVSMRVIADHARATTFL 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+LP+NEGRGYVLRRIMRRA+ + + LG   P +  +  A+  EMG+AYPE  + + 
Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLERPFLAAVCGAVIDEMGAAYPETRENRA 363

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDVAFK 389
            IE+  + E+E F +TLD+GL +L+G +  L  D                 I++G VAF+
Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDATHDGKPATPAPDRARPIIDGKVAFQ 423

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT G PLD+ + I   RG   +D   F++ + EQ  RAR+   G G    + +   + 
Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQ--RARSEWKGSGEQGVDDLHKQIA 480

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
            + G  +F+GY+L                           + VKAI+  G  V  A  G 
Sbjct: 481 GELGEVKFLGYEL-----------------------PAARAQVKAILANGARVARAGKGD 517

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +    
Sbjct: 518 KVEIVTDATPFYGESGGQVGDVGHITGAGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L++D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +P+T 
Sbjct: 578 AVELSVDDRRRDLVRANHSATHLLQLALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            EL ++E  VN+++ +N    T ++  E+A  +GA  + G KY D VRVV +        
Sbjct: 638 EELAAVERRVNELVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIG------P 691

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  A+ L
Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS------- 802
           K     V  ++E+     + L+     R L+      +  +  D+  ++  +        
Sbjct: 752 KAGALEVSQKIEQTQRRVKDLE-----RALEEARSKAAAAQSGDLAALAKDVGGAKVLAA 806

Query: 803 --EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             E D K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +A
Sbjct: 807 RVEGDGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           K++ GG GGG+P MAQ+GG +    ++A+  VA    +
Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAELAAR 902


>gi|254786776|ref|YP_003074205.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237686567|gb|ACR13831.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 866

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/903 (42%), Positives = 536/903 (59%), Gaps = 47/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL++F + GHE++ SSSL+P NDPTL+FTN+GMV FK++F G EK  Y  
Sbjct: 1   MMKSAEIRDAFLKYFAEQGHEVVNSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+  W+ LTK   L
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRFGWEFLTKVLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+  D+EA  +W K  G+SAD+  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 121 PAERLWVTVHISDDEAADIWLKEVGVSADRFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS +++ +RYIEIWNLVFMQFE+Q+  E   LP+ S+DTGMGLER+A V+Q 
Sbjct: 180 ADVPGGPPGSENDDLDRYIEIWNLVFMQFERQSNGELVPLPRPSVDTGMGLERIAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ L++A+   TG     N  +  RVI DH+RS SFL+ DG+LP+NEGRGY
Sbjct: 240 VHSNYEIDLFQALLRAAATATGTSDLENKSL--RVIADHIRSCSFLVCDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +   LG T      L+ AL  +MG AYPEL Q +  IE+ L +E+++F 
Sbjct: 298 VLRRIMRRAIRHGHKLGQTNSFFHTLVAALVEQMGDAYPELRQHQAQIEKVLLTEEQQFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+G+ +L+  L+ L    ++ G+  F LYDT+G P+D+  DI   R L  +D+  + 
Sbjct: 358 KTLDKGMAILEDSLAGL-DGSVIPGETVFTLYDTYGFPVDLTNDIARERSLT-LDLDGYE 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E Q++RARA      SG+ +  + +     G T+F+GY  L                
Sbjct: 416 SLMEAQKARARA------SGSFKMDYTANLSLEGTTEFLGYTHLE--------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V+A+ + GE V +   G +  +V  +TPFY E+GGQ GDTG       
Sbjct: 455 --------ESGKVQALFKDGEKVSQLNEGDEGVIVLSRTPFYGESGGQAGDTGYISTVAG 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++ D QK      +H  ++  G +  +  +   +D   R   ++NHSATHLLH AL  
Sbjct: 507 KFEVRDCQKSGSN-HLHIGVMLSGSIAEQNEVTACVDQSVRAATALNHSATHLLHAALRK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +    LRFD +H + +  AELK IE  VN  I +N  V T + + + A
Sbjct: 566 VLGDHVTQKGSLVDSQRLRFDFSHFEAVKPAELKQIERIVNGEIRRNTVVTTELCDMDTA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L G KY D VRV+S+    G   S  LCGGTHVS TG+I L+ I+SE  I +G
Sbjct: 626 KERGAMMLFGEKYGDEVRVLSM----GEGFSVELCGGTHVSRTGDIGLMRIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A   +  Q E L ++A  LK    ++  ++E++    + L+   A    
Sbjct: 682 VRRIEAVTGEHALVAVESQAELLSTVAGALKSGAESLPEKLEQLLARNKMLEKELAAANS 741

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             +I  +  +   +  VD+K L S +D L+ K+ S  I+L  ++ E 
Sbjct: 742 KLAAASADEWLGEAQEIEGLKLLVKSLEGVDAKSLLSTLDQLKNKLGSCAIILASVN-EG 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K ++   V+ D   R  A DL +  A  + GG GGGRP MAQ  G +      A+A V +
Sbjct: 801 KIALAAGVSADSTKRLRAGDLLKYVATQV-GGKGGGRPDMAQGAGSDVAALPGALASVPA 859

Query: 895 FLK 897
           +++
Sbjct: 860 WVQ 862


>gi|326569365|gb|EGE19425.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 893

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/918 (41%), Positives = 536/918 (58%), Gaps = 62/918 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 VSEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPNGNKADQAIAGVASFL 896
             +     + + G+  ++
Sbjct: 871 ATDVANLPKLMTGLTDWI 888


>gi|326571434|gb|EGE21449.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 893

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/918 (40%), Positives = 537/918 (58%), Gaps = 62/918 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPNGNKADQAIAGVASFL 896
             +     + + G+  ++
Sbjct: 871 ATDVANLPKLMTGLTDWI 888


>gi|119946985|ref|YP_944665.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|205830184|sp|A1T001|SYA_PSYIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119865589|gb|ABM05066.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 867

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/893 (42%), Positives = 542/893 (60%), Gaps = 58/893 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + + + IR  F +FF   GH+ + + SL+P +DPTL+FTN+GM  FK+ + G EK  Y  
Sbjct: 2   IKSTNEIRQGFRDFFVNKGHQSVSTGSLVPHDDPTLLFTNAGMNQFKDTYLGTEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E  L
Sbjct: 62  ATSSQCCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEYLTVELGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+DED EA K+W +  G+    ++RI   DNFWSM +TGPCGPCSEIF+D G
Sbjct: 122 PKDKLWVTVFDEDLEAEKIWIEEIGVDPKCVLRIGAKDNFWSMGDTGPCGPCSEIFYDHG 181

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PG++EE G+R+IEIWN+VFMQ+ +        LPK S+DTGMGLER++ ++Q 
Sbjct: 182 EDVWGGPPGTAEEDGDRFIEIWNIVFMQYNRHADGTMENLPKPSVDTGMGLERISAIMQN 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +NY+IDLF+ LI+   +VTG    E  ++   RV+ DH+RS  FLI DG++P+NEGRG
Sbjct: 242 CHSNYEIDLFQGLIKKVAEVTGASDLEDKSL---RVVADHIRSCGFLICDGVMPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG  +     +   L  +MG AYPEL + +L +E+ LR E+E+F
Sbjct: 299 YVLRRIIRRAVRHGHKLGAKDIFFFKIYDELINQMGDAYPELSKQRLFVEKILRREEEQF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTLDRGL +LD  L HL + +++ GDV FKLYDT G P D+  DI   RGL  ID   F
Sbjct: 359 AKTLDRGLQILDNELDHL-EGQVIPGDVVFKLYDTFGFPADLTADIARERGLT-IDEAGF 416

Query: 419 NQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           ++A+ EQR RA +A++ G+    T      + +K   T+FIGY+ L+G            
Sbjct: 417 DKAMAEQRKRAQQANNFGIDYNKT----LIIDQK---TEFIGYETLQG------------ 457

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V  +V +G  V     G   +V+   TPFYAEAGGQ GD G  I +
Sbjct: 458 -----------AATVTHLVVEGAFVNALKEGDSGQVILSATPFYAEAGGQSGDAGKLILN 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +TD +K  +  FVH   V  G ++    +   +D   R+ ++++HSATHLLH AL
Sbjct: 507 NGVFVVTDTKKSGDA-FVHSGYVGMGSVKVNDKVHAEVDTARRQSIALHHSATHLLHAAL 565

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG HV+Q GS +  D LRFD +H + +++  L  +   VN+ I  N  VVT++M+ E
Sbjct: 566 RKTLGEHVTQKGSLVDADKLRFDFSHFEALSADSLSEVTFLVNEAIRNNYEVVTKLMDIE 625

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A +S A AL G KY++ VRVV +     G  S+ LCGGTH   TG++ L  I SES I 
Sbjct: 626 EAKSSNAMALFGEKYDEMVRVVQM-----GDFSTELCGGTHAKRTGDLGLFLIRSESGIA 680

Query: 718 AGIRRIEAITGQRAR---SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           AG+RRIEA  G  A    S L+ + +K   L     V+ G    ++E++ +  + L+   
Sbjct: 681 AGVRRIEATVGSAADQVISELLYEVDKACGLVRGDHVNLGE---KIEQLVDRSKLLEKEV 737

Query: 775 AKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A+ K ++      N+ D +  +I  V  +   I  +D K L+  +D ++ K+QSGI++L 
Sbjct: 738 AELKAKIASAAGANLID-NAIEINGVKVVIANIEGIDPKLLRDSVDQMKNKMQSGIVVLA 796

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            ++ + K S++  V++DL+ +  A +L  L A  + GG GGGRP MA +GG N
Sbjct: 797 TVAADDKVSLIAGVSKDLIKKVKAGELVNLVAGPV-GGKGGGRPDMAMAGGNN 848


>gi|254673270|emb|CBA08330.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 885

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/914 (42%), Positives = 539/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 580 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFL 896
            K  + +  V S+L
Sbjct: 867 GKLPEMLVSVESWL 880


>gi|254670010|emb|CBA04754.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 885

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/914 (42%), Positives = 539/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 580 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFL 896
            K  + +  V S+L
Sbjct: 867 GKLPEMLVSVESWL 880


>gi|218885980|ref|YP_002435301.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756934|gb|ACL07833.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 879

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/905 (43%), Positives = 527/905 (58%), Gaps = 51/905 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEFFQ  GHE++ SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFFQSQGHEIVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRGYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT++  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEDLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA  LW   + + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEARDLWLAHTDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G   + +RY+EIWNLVFMQ++Q     R  LPK SIDTGMGLER+A V 
Sbjct: 181 EHMTCGPDCGIGKC-DCDRYLEIWNLVFMQYDQAADGTRTALPKPSIDTGMGLERIAAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +IQ +  + G+ Y  N+  +   RVI DH RS +F+I DGILP+NE
Sbjct: 240 QGVYSNFDTDLFQAIIQYTCGIAGVSYRANDETDTALRVIADHSRSMAFMITDGILPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RL+G T   +      +   MG  YPEL      +   +R E+
Sbjct: 300 GRGYVLRRLIRRAYRFGRLIGQTGTFLHKTALKVVEVMGDDYPELRGNADFMARVVREEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TLD+GL LL+  L  L       + GDVAFKLYDT+G PLDI+ DI   RG   +
Sbjct: 360 ERFNRTLDKGLALLEEELESLRGAGSTRVAGDVAFKLYDTYGFPLDIVNDIAEKRGFT-V 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   + EQ+ RA+A   G G       + +L E+   ++FIGYD L G        
Sbjct: 419 DEEGFRTLMAEQKERAKAAWKGSGESDIASRFHALLEEGLRSEFIGYDHLSGD------- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S +V  +   G   E    G K  +V  +TPFY  +GGQ GD G 
Sbjct: 472 ---------------SRVVALLDATGLPSEGLPKGAKGYLVATRTPFYGASGGQTGDPGS 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 + ++ D  K +  + VH      G +  +  + L ++   R   + NH+ THLL
Sbjct: 517 ITSPSGKARVLDTLKPSPELTVHQIETVDGEILPDQEVHLQVEEDERVASARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH   +T  E+ ++E  VN +I  NLP+ T  
Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAAMTPEEIAAVEREVNRVILANLPLETDH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+  GA AL G KY D VRVV++  E     S  LCGGTH+ +TG+  L  I+SE
Sbjct: 637 MAYDAALTRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLILSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEAITG  A   +M Q  +L  +A  LK   G +V RVE + ++ + L+  
Sbjct: 692 GGVAAGVRRIEAITGWNALRMVMDQRAELGQVAGLLKARSGEIVPRVEALQKDVKSLRKD 751

Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGI 824
             K   Q       N+ D    ++A++N +  + ++V+    K L+ +MD ++ K+ SGI
Sbjct: 752 LEKASSQATSGQGRNIMD----ELAEINGVKVLAAKVEVPNVKALRDLMDDVRSKLPSGI 807

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             L     + K S+++ V++DL DRF A  L +  A  + GG GGGRP MAQ+GG N   
Sbjct: 808 ACLAAPDGD-KVSLIVAVSKDLHDRFTAPALIKAVAAAV-GGSGGGRPDMAQAGGTNPAG 865

Query: 885 ADQAI 889
            D+A 
Sbjct: 866 IDEAF 870


>gi|115375322|ref|ZP_01462586.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367695|gb|EAU66666.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 922

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/911 (41%), Positives = 547/911 (60%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF+  GH  + SS L+P NDPTL+FTN+GMV FK++FTG+EK  Y   T
Sbjct: 31  TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 90

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L  
Sbjct: 91  TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 150

Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++       D EAF+LW +  G+  D+I+++   DNFW+M +TGPCGPCSEI 
Sbjct: 151 ERLAVTVFNGEQGVPWDAEAFELWAQ-QGVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 209

Query: 177 FDQGECIP-----GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           + QG+ IP      G P  G + + +R++EIWNLVFMQFE++ K    I LPK SIDTG 
Sbjct: 210 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 269

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NYD DLF+ ++    ++ G  Y      + RVI DH R+++FLI+D
Sbjct: 270 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 329

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRIMRRA+ +  LLG  +     ++  +   M  AYPEL + +  + 
Sbjct: 330 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 389

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E  R E+E F +TLDRG+ L+D  ++ L +  +  L+G   F L+ T+G P D+ Q IL 
Sbjct: 390 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 449

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG    D+  F + +E++  + +    G G      ++ +L E+ G ++F+GY+     
Sbjct: 450 ERGFDA-DLDGFWKEMEKEADKNKFG--GSGEKAISTVYQTLAERLGTSEFLGYEGEGHE 506

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V+AI++ G  V +A +G+ VE+V D+TPFY E+GG
Sbjct: 507 GEGS---------------------VRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 545

Query: 527 QLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q GDTG   G G +   Q+TDVQ+   G+ VHH  V+ G  +T   +   +D Q R+ + 
Sbjct: 546 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 605

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV Q GS + PD LRFD +H    T  +L+ +ED VN  + 
Sbjct: 606 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 665

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    TR+M  ++A  SGA A+ G KY + VRVV+V  +     S+ LCGGTHV  +G+
Sbjct: 666 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHPQ-----STELCGGTHVRRSGD 720

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--- 761
           I L  I+SE  I +G+RRI A+TG  A  +L   + +L+  A  LK S   +  RVE   
Sbjct: 721 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 780

Query: 762 -EIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             + E  RK++ +  K +   N + L    ++  +  ++  +   D K  + + D L+ +
Sbjct: 781 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 840

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I+SG++  +G  K+ KA +L+ VT+D++++  +A  L R  AK + GG GGG+  MAQ+G
Sbjct: 841 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEV-GGKGGGKADMAQAG 898

Query: 879 GPNGNKADQAI 889
           GP+ +K   A+
Sbjct: 899 GPDASKLPAAL 909


>gi|326561486|gb|EGE11830.1| alanyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
          Length = 893

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/918 (40%), Positives = 536/918 (58%), Gaps = 62/918 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPNGNKADQAIAGVASFL 896
             +     + + G+  ++
Sbjct: 871 ATDVANLPKLMTGLTDWI 888


>gi|326576631|gb|EGE26538.1| alanyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 893

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/903 (41%), Positives = 530/903 (58%), Gaps = 62/903 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  I     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPN 881
             +
Sbjct: 871 ATD 873


>gi|270157134|ref|ZP_06185791.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164461|ref|YP_003454599.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150]
 gi|269989159|gb|EEZ95413.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857634|emb|CBJ11474.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150]
          Length = 860

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/885 (43%), Positives = 544/885 (61%), Gaps = 58/885 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  F ++F K+GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E   YQ   T 
Sbjct: 4   SEIRQAFFDYFTKHGHQLVESSSLIPANDPTLLFTNAGMVQFKDVFLGVEARSYQRAVTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT+   L + R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTQVMRLPEER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECI 183
           L++TVY ED+EA  +W K   +SA +  R    DNFWSM +TGPCGPC+EIF+D   E  
Sbjct: 124 LWVTVYKEDQEAEDIWLKEMKVSAARFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEIP 183

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G      E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q   +N
Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDKEGHLHPLPKPSVDTGMGLERLAAVVQGVHSN 243

Query: 244 YDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ID F++LIQ+     +VT +     N+ + +VI DH+RSS+FLIADG++P NEGRGYV
Sbjct: 244 YEIDTFQYLIQSIAKLGEVTDL-----NLTSLKVIADHIRSSAFLIADGVIPGNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P   HL+ +L T MG AYPELIQ+K  IE  L  E+ +F +
Sbjct: 299 LRRIIRRAIRHGNKLGLPTPFFSHLVESLITVMGDAYPELIQSKSHIERVLNQEENQFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL   +  LG  EI +G +AFKLYDT+G P+D+  DI   +GL  +D+  FNQ
Sbjct: 359 TLEQGLRLLQEQMHSLGGHEI-SGQIAFKLYDTYGFPIDLTADIAREQGLF-VDMNGFNQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++QR +++A S            FS+   Y A   + Y     S F   ++K      
Sbjct: 417 LMQQQREQSQAAS-----------QFSV--DYNANTQLDYQ----SDFHGYEKK------ 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  V + + A++Q G  V+    G K  VV D TPFYAE+GGQ+GD G       R
Sbjct: 454 ------EVEAKIIALLQDGMEVQVLNQGMKGAVVLDHTPFYAESGGQVGDKGMLTSTNFR 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D QKK + I VH+  +  G    +  +   ID + R  + +NH+ATHLLH AL  +
Sbjct: 508 FRVDDTQKKGQAI-VHYGEMLDGTATLKQFVHAQIDNERREAIRLNHTATHLLHAALKAV 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G  V Q GS +  +  RFD +H + +T+ +++ IE  VN+ +  N  VVTR+M+ E A 
Sbjct: 567 VGPQVQQKGSLVDAERARFDFSHFESLTAEQIQEIECLVNEQVRANNEVVTRLMDIESAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL G KY D VRV+S+     G  S  LCGGTH   TG+I L  I++E  I +GI
Sbjct: 627 KSGAVALFGEKYADEVRVLSM-----GEFSKELCGGTHARRTGDIGLFKIIAEYGIASGI 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---R 777
           RRIE +TG+ A + +  Q   L  LAS LK +  N+  +V ++  E + ++   AK    
Sbjct: 682 RRIEMVTGRYALAWVNEQQALLNELASSLKTTATNLSDKVGQLLAENKSMEKEIAKLQTE 741

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K+Q +  DL+ +++  VN +S +I +   VD++ L++ +D L+ +++S +I+L  + ++ 
Sbjct: 742 KVQKSGADLA-NEVEKVNGISLLIKQLEGVDNQTLRTTLDQLKSRLESAVIVLFTL-EQN 799

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           K +V+  V++ +L +  A   A L   +   G GGGR  MAQ GG
Sbjct: 800 KMNVIAGVSKSILGKVPAA--ATLVRHLC--GKGGGRDDMAQGGG 840


>gi|296112817|ref|YP_003626755.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295920511|gb|ADG60862.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 893

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/918 (40%), Positives = 535/918 (58%), Gaps = 62/918 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSGDLLRFDFSYDKPLTEQNINQIETMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASVYTADGEDKITMTASVGKHLTSKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPNGNKADQAIAGVASFL 896
             +     + + G+  ++
Sbjct: 871 ATDVANLPKLMTGLTDWI 888


>gi|28198031|ref|NP_778345.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182680658|ref|YP_001828818.1| alanyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130077|sp|Q87F43|SYA_XYLFT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830289|sp|B2I6K2|SYA_XYLF2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28056091|gb|AAO27994.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182630768|gb|ACB91544.1| alanyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307579119|gb|ADN63088.1| alanyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 884

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/911 (41%), Positives = 555/911 (60%), Gaps = 52/911 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPSNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I  G      E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N  +   VI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSLC--VIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLIAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423

Query: 415 IISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +  F  A+ +QR  ARA    G G   + +   +L      T F+GY+ L+      +D 
Sbjct: 424 MAGFEAAMTQQRKTARAAGKFGRGVQLSAERAATLS----PTVFLGYEQLQA-----DDL 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +V+                 A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G 
Sbjct: 475 RVV-----------------ALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGT 517

Query: 534 AIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            +  DG+RL++TD QK       H A + +G ++    L  ++    R+ +++NHSATHL
Sbjct: 518 LMASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHL 577

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL ++ G+HV Q GS + PD LRFD +H +PI++A++  IE  VND +  N  V+  
Sbjct: 578 LHCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIE 637

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+S
Sbjct: 638 QMGMQAALDAGAMALFGEKYGEHVRVVTMGT------SVELCGGTHITRTGDIGLFKIIS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  NVV  + ++ +  + L+ 
Sbjct: 692 ECGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANNVVNHIRQLTDRQKTLER 751

Query: 773 IHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K +L    + DL      +ADV  ++  +  +D K L+  +D L+ ++   +I+L
Sbjct: 752 ELEKLKGKLISGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVL 811

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     
Sbjct: 812 AGVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRS 870

Query: 888 AIAGVASFLKK 898
           A+ GVA+++K+
Sbjct: 871 ALDGVATWVKQ 881


>gi|89899401|ref|YP_521872.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|122480046|sp|Q221G2|SYA_RHOFD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89344138|gb|ABD68341.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118]
          Length = 876

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/908 (40%), Positives = 535/908 (58%), Gaps = 56/908 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++V+ IR  FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 8   ASVADIRKIFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++  W+LLTK + L 
Sbjct: 68  ASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWGWELLTKVYKLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY +D+EA+ +W +  GL  ++++RI  N       DNFW MA+TGPCGPCSE
Sbjct: 128 ADKLWATVYIDDDEAYNIWTQEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS E+ G+RYIEIWN VFMQ++ Q       LP   +DTGMGLER+
Sbjct: 188 IFYDHGPAIAGGPPGSPEQDGDRYIEIWNHVFMQYDMQPDGSVKPLPAPCVDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+ID+F  LI+A+ + TG    GN  +  RVI DH+R+++FL++DG+LP+
Sbjct: 248 AAILQHVHSNYEIDIFDALIKAAARETGCTDLGNKSL--RVIADHIRATAFLVSDGVLPS 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG   P    L+P L T MG AYP L      I + L++
Sbjct: 306 NEGRGYVQRRIIRRAIRHGYKLGQKAPFFYKLVPDLVTLMGEAYPGLATQAERIAQVLQA 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT G PLD+  D+   RG+  +
Sbjct: 366 EEERFFETLANGMQILDETLT--GDAKVLPGDVAFKLHDTFGFPLDLSADVCRERGVE-V 422

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F+ A+E+Q+++ RA     G    ++   +L+       F+GY+ L          
Sbjct: 423 DEAGFHAAMEKQKAQGRA----AGKFRMDR---ALEYSGDGNDFVGYERL---------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         V+ IV A+      V E  +GQ   VV   TPFY E+GGQ+GD G 
Sbjct: 466 ------------TEVTKIV-ALYADSTPVSELKAGQAGVVVLAATPFYGESGGQVGDQGA 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              DG    + D QK    +F HH +++ G L+    +   ++   R     NHSATHL+
Sbjct: 513 IFSDGAMFDVADTQKIKADVFGHHGVLKSGALKIGDVVTAHVNASLRAATQRNHSATHLM 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  +++ +E  VN  I  N    +R+
Sbjct: 573 HKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTDEQIREVEARVNSEILSNAATQSRV 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A  +GA  L G KY + VRV+ +        S  LCGGTHV+ TG+I L  +V+E
Sbjct: 633 MDIDAAQETGAMMLFGEKYGESVRVLDIG------ASRELCGGTHVARTGDIGLFKVVAE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S + +G+RRIEA+TGQ A S+L   ++ +  +A  LK     +  RV  + +  + L  +
Sbjct: 687 SGVASGVRRIEAVTGQNALSYLQDLEDTVTQVAGTLKAPVVEINERVAGVLDHLKSLEKE 746

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
           +   K KL     D    +  DV  +  +++ +   D+K L+  MD L+ K++S +I+L 
Sbjct: 747 IAALKGKLASAQGDELVTQAVDVKGIKVLVAMLEGADTKTLRDTMDKLKDKLKSAVIVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  +   VT + + +  A +L    A  + GG GGG+P MA +GG    K   A
Sbjct: 807 AVEGD-KVQIAAGVTSNSVGKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTEPAKLPAA 864

Query: 889 IAGVASFL 896
           +A V +++
Sbjct: 865 LASVMAWV 872


>gi|269214760|ref|ZP_05987102.2| alanine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209090|gb|EEZ75545.1| alanine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 885

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/915 (41%), Positives = 538/915 (58%), Gaps = 68/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF++L++A  + TG  +      + +VI DH+RS SFLIADG+LPA
Sbjct: 254 AAVMQHVHSNYEIDLFQNLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L  +   T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYEGQDTEFKGYS----------ER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 580 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFLK 897
            K  + +A    ++K
Sbjct: 867 GKLPEMLASAEGWVK 881


>gi|304386989|ref|ZP_07369247.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304338946|gb|EFM05042.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 885

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/914 (42%), Positives = 538/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  D+    G+  +
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE-L 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 580 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFL 896
            K  + +  V S+L
Sbjct: 867 GKLPEMLVSVESWL 880


>gi|226940409|ref|YP_002795483.1| alanyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|226715336|gb|ACO74474.1| Sya [Laribacter hongkongensis HLHK9]
          Length = 877

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/916 (43%), Positives = 551/916 (60%), Gaps = 66/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  +L+FF   GH+++PSSSL+P  DPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 2   KASEIRQKYLDFFASKGHQIVPSSSLVPWEDPTLLFTNAGMNQFKDVFLGFDKRPYTRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   L
Sbjct: 62  TSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTDPKWLGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L +TVY  D+EAF +W K  G+ A+KI+RI  N       DNFW M +TGPCGPC+
Sbjct: 122 PKEKLMVTVYASDDEAFDIWNKEIGVPAEKIVRIGDNKGAPYASDNFWQMGDTGPCGPCT 181

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 182 EIFYDHGDHIWGGPPGSPDEDGDRFIEIWNNVFMQFNRTEDGVMNPLPKPSVDTGMGLER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+IDLF++LI+A+ + TG+ +  +   + +VI DH+R+ SFLIADG++P
Sbjct: 242 ISAVLQGVHSNYEIDLFQNLIRAAARETGVPFSMDE-PSLKVIADHIRACSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N+GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL   + LIE+ L+
Sbjct: 301 SNDGRGYVLRRIIRRAIRHGYKLGQKGLFFHRLVTDLVAEMGDAYPELRAKQALIEDELK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ +F +TLD+G+ LL+  L    KD  ++L+G  AF+LYDT+G PLD+  DI   R L
Sbjct: 361 KEEIKFAETLDKGMALLEEAL----KDGVQVLDGKTAFQLYDTYGFPLDLTADICRERDL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A+E QR+++RA S       T K+   L+     T+F GY     ++   
Sbjct: 417 Q-VDQDGFDAAMEAQRAQSRAAS-------TFKMGGKLEYAGDDTRFEGY-----AESTA 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E R                  + A+ + G+ V+   +G    VV D+TPFYAE GGQ+GD
Sbjct: 464 EGR------------------ILALYKDGQPVDTLSAGDSGVVVLDRTPFYAEGGGQIGD 505

Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           TG     G       + D QK     F H   + RG L+T M++V TID   RR +  NH
Sbjct: 506 TGTLAATGGLDALFDVLDTQKVTAAAFGHEGRLVRGQLKTGMTVVATIDLHRRRAIQRNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THL+H AL  +LG HV+Q GS +T +  RFD +H +P+++ ++  IE  VN +I  N 
Sbjct: 566 SVTHLMHAALRDVLGKHVTQKGSLVTAERTRFDFSHHEPVSAEQMAEIERIVNFVIGANY 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V  R+M+ +DA   GA AL G KY D VRV+ +     G  S+ LCGGTHVS TG+I  
Sbjct: 626 DVSARLMSMDDAQKLGAMALFGEKYGDVVRVLKM-----GDFSTELCGGTHVSRTGDIGF 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+TG+ A +++  QD+ ++     LK  S   V  R+  + ++
Sbjct: 681 FKIVSEGGVAAGVRRIEAVTGEGAVAYVQSQDKLVRDACHMLKAQSHEEVAERIAALQDQ 740

Query: 767 YRKLQLIHAKRKLQLNV---EDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
            + L    A+ K +L     E+L+   +  VN    + +E+   D+  L+  MD L+ ++
Sbjct: 741 LKGLDKEVARLKGKLAASAGEELAASAVT-VNGARLLAAELEGADAATLRDTMDKLKDRL 799

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           QS +I+L     + K  +   VT+DL  +  A +L    A  + GG GGG+P +A +GG 
Sbjct: 800 QSAVIVLAS-KADGKVQLAAGVTKDLTGKVKAGELVNFVAGQV-GGKGGGKPDIAMAGGS 857

Query: 881 NGNKADQAIAGVASFL 896
              K  +A+A V  ++
Sbjct: 858 EPEKLAEALASVQGWV 873


>gi|310823694|ref|YP_003956052.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309396766|gb|ADO74225.1| Alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 897

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/911 (41%), Positives = 547/911 (60%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF+  GH  + SS L+P NDPTL+FTN+GMV FK++FTG+EK  Y   T
Sbjct: 6   TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L  
Sbjct: 66  TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 125

Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++       D EAF+LW +  G+  D+I+++   DNFW+M +TGPCGPCSEI 
Sbjct: 126 ERLAVTVFNGEQGVPWDAEAFELWAQ-QGVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 184

Query: 177 FDQGECIP-----GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           + QG+ IP      G P  G + + +R++EIWNLVFMQFE++ K    I LPK SIDTG 
Sbjct: 185 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NYD DLF+ ++    ++ G  Y      + RVI DH R+++FLI+D
Sbjct: 245 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 304

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRIMRRA+ +  LLG  +     ++  +   M  AYPEL + +  + 
Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 364

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E  R E+E F +TLDRG+ L+D  ++ L +  +  L+G   F L+ T+G P D+ Q IL 
Sbjct: 365 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 424

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG    D+  F + +E++  + +    G G      ++ +L E+ G ++F+GY+     
Sbjct: 425 ERGFDA-DLDGFWKEMEKEADKNKFG--GSGEKAISTVYQTLAERLGTSEFLGYEGEGHE 481

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V+AI++ G  V +A +G+ VE+V D+TPFY E+GG
Sbjct: 482 GEGS---------------------VRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 520

Query: 527 QLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q GDTG   G G +   Q+TDVQ+   G+ VHH  V+ G  +T   +   +D Q R+ + 
Sbjct: 521 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 580

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV Q GS + PD LRFD +H    T  +L+ +ED VN  + 
Sbjct: 581 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 640

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    TR+M  ++A  SGA A+ G KY + VRVV+V  +     S+ LCGGTHV  +G+
Sbjct: 641 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHPQ-----STELCGGTHVRRSGD 695

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--- 761
           I L  I+SE  I +G+RRI A+TG  A  +L   + +L+  A  LK S   +  RVE   
Sbjct: 696 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 755

Query: 762 -EIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             + E  RK++ +  K +   N + L    ++  +  ++  +   D K  + + D L+ +
Sbjct: 756 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 815

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I+SG++  +G  K+ KA +L+ VT+D++++  +A  L R  AK + GG GGG+  MAQ+G
Sbjct: 816 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEV-GGKGGGKADMAQAG 873

Query: 879 GPNGNKADQAI 889
           GP+ +K   A+
Sbjct: 874 GPDASKLPAAL 884


>gi|205830264|sp|A9M198|SYA_NEIM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
            K  + +  V S+L
Sbjct: 856 GKLPEMLVSVESWL 869


>gi|304316715|ref|YP_003851860.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778217|gb|ADL68776.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 879

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/900 (41%), Positives = 563/900 (62%), Gaps = 54/900 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SL+P ND +L+  N+GM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK  +L + 
Sbjct: 66  CQKCIRTP----DIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T+Y+ D+EA+ +W K+ GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVTIYENDDEAYDIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF++ ++     LPK +IDTGMGLERMAT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFDKDSEGNYNSLPKPNIDTGMGLERMATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++ G+KY  +  N V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITDYVGEMAGVKYGDDKKNDVSLRVITDHIRGVTFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  Y +LLG  +P + +++  +      AYPELI+ K  I++ ++ E+ERF 
Sbjct: 301 VLRRILRRAARYGKLLGLDKPFLHNVVDVVVEHYSGAYPELIERKDYIKKVIKKEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +LD  ++ L  +   +L G+ AFKLYDT+G P+++ ++IL   G+  +D + 
Sbjct: 361 ETIDQGLGILDEYINDLRSEGKTVLEGNKAFKLYDTYGFPIELTKEILNESGMT-VDEVE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      +   + I+ +LK+    T+F+GYD +      K D KVL 
Sbjct: 420 YQKELEKQRLRARSSRKEDNALWEKDIYSTLKDI--ETKFVGYDSV------KSDAKVL- 470

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                           AI++  E+V+ A +G++V V+ D TPFYAE+GGQ+GD G    +
Sbjct: 471 ----------------AIIKDNELVDSAEAGEEVNVILDMTPFYAESGGQVGDKGVIKNE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + + I D +K     FVH   VERGIL    ++   ID +NR   + NH+ATHLLH AL
Sbjct: 515 DVFVNIKDCKKAGGNKFVHIGTVERGILSVGDTVEALIDEKNRLSTARNHTATHLLHSAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              +G HV Q GS +TP+ LRFD TH + +T  E+K+IE+ VN+ I +N+ V   IM+ +
Sbjct: 575 RKFIGDHVHQAGSLVTPERLRFDFTHYQALTDEEIKTIENEVNEKIYENIDVSVDIMSHD 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA AL   KY D VRVV+V       +S  LCGGTHV +TG I +  I+SES + 
Sbjct: 635 EALKKGAMALFQEKYGDVVRVVNV-----SDYSKELCGGTHVDNTGNIGVFKIISESGVA 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIH 774
           AGIRRIEA+TG  A  ++  ++E + ++   LKV++ ++V RV    +  ++Y K Q+  
Sbjct: 690 AGIRRIEAVTGINAVKYMNEKEEIIANIGQILKVNEKDIVNRVTGMSQTIKDYEK-QIEQ 748

Query: 775 AKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K+  +  +   +   D N   F+S ++++ D  ELK + D L+ K++S +++   I 
Sbjct: 749 LKSKIVSSTSERLINLAVDFNGVKFISAVLNDFDVDELKMMGDILKDKLKSAVLVFATI- 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  K + + + T+D++ +F  +++  +  +V  + GG GGGRP MAQ  G N +K + A+
Sbjct: 808 RNGKINFVGMATKDVV-KF-GINVGTIIKEVCQIAGGKGGGRPDMAQGVGNNLDKVNDAL 865


>gi|218768564|ref|YP_002343076.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|20532265|sp|Q9JTG4|SYA_NEIMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121052572|emb|CAM08912.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 874

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
            K  + +  V S+L
Sbjct: 856 GKLPEMLVSVESWL 869


>gi|161870450|ref|YP_001599622.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|161596003|gb|ABX73663.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 885

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELAKAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFL 896
            K  + +  V S+L
Sbjct: 867 GKLPEMLVSVESWL 880


>gi|294339360|emb|CAZ87716.1| alanyl-tRNA synthetase [Thiomonas sp. 3As]
          Length = 917

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/952 (40%), Positives = 541/952 (56%), Gaps = 96/952 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           NVS IR  FL +F+  G   + SSSL+P NDPTL+FTNSGMV FK++F GQ++  Y+  T
Sbjct: 2   NVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L  
Sbjct: 62  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 EKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK-QERF---------------- 217
           F+D G  I GG PGS EE G+RYIEIWNLVFMQFE+    +ERF                
Sbjct: 182 FYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFDTEDQATARKQAVEAE 241

Query: 218 ---------------------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
                                 LPK  +DTGMGLER+A VLQ   +NY+IDLF+ LI+A+
Sbjct: 242 GGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKAA 301

Query: 257 EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
            + T     G+   + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ +   LG
Sbjct: 302 ARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKLG 359

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
             +P    ++P L  +MG+AYPEL + +  + E L++E+ RF +T++ G+ +LD  L+ L
Sbjct: 360 VRQPFFYKMVPDLVAQMGAAYPELAEVQGRVAEVLQAEEARFFETIEHGMGVLDTELAAL 419

Query: 377 --GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
                 +L G++AFKL+DT G PLD+ QD+    G+  +D  +F+ A+  QR +ARA   
Sbjct: 420 RAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDAAMARQREQARA--- 475

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                   K+  +L      T+F GY+ L     +KE R V                  A
Sbjct: 476 ----AGKFKMQAALDYVGDKTRFDGYEHL----LVKEARVV------------------A 509

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG--IRLQITDVQKKAE 551
           + + G  V    +G    VV D+TPFYAE+GGQ+GD+G    GD   +R  + D QK   
Sbjct: 510 LYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCELRFVVHDTQKLQA 569

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +F HH  +E G L+    +   +D + R+ +  NHS THL+H AL  +LG HV Q GS 
Sbjct: 570 DVFGHHGTLESGSLKVGEIVAAQVDGERRQAVMRNHSVTHLMHKALRLVLGDHVQQKGSL 629

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  D  RFD  H  P++  E+  +E  VN+ I  N     R+M  ++A   GA  L G K
Sbjct: 630 VDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGLGAMMLFGEK 689

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y D VRV+ +        S  LCGGTHV+ TG+I L  IV E  + AGIRR+EAITG  A
Sbjct: 690 YGDTVRVLDIGT------SRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAITGLNA 743

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789
            + +  Q+  +  L+  LK        +VE++ E+ R+L+   A+ K Q           
Sbjct: 744 LAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLAQLKAQQAAAQGDALVS 803

Query: 790 ---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
               I   + +   +  +D+K L+  +D ++ K+++ +++L+   +  K  +   V+ D 
Sbjct: 804 QAITIGGTSVLLARMDGLDAKGLREAVDRIKSKLKT-VVVLLASREGDKVQLAAGVSADR 862

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + +  A DL   +A+ + GG GGGRP  A +GG    + D A+A   S L++
Sbjct: 863 VGQIKAGDLVSAAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913


>gi|319410810|emb|CBY91198.1| alanyl-tRNA synthetase [Neisseria meningitidis WUE 2594]
          Length = 885

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFL 896
            K  + +  V S+L
Sbjct: 867 GKLPEMLVSVESWL 880


>gi|71066015|ref|YP_264742.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|83305857|sp|Q4FRQ0|SYA_PSYA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71039000|gb|AAZ19308.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4]
          Length = 890

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 541/914 (59%), Gaps = 58/914 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F++FF    H  + SSSLIP NDPTL+FTN+GM  FK  F G E   Y    T 
Sbjct: 8   ADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVTS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I   W+ LT +    +D+
Sbjct: 68  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAIDK 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+T+Y+ D+EAF +W K  G+ +++IIRI  N       DNFW+M +TGPCGPC+E+
Sbjct: 128 NRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTEV 187

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GGLPG+ EE G+RYIEIWN VFMQF +Q       LP  S+DTGMGLER++
Sbjct: 188 FYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGTMLPLPAPSVDTGMGLERIS 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q    NY+IDLF HL+ A+ ++  ++ E     + +VI DH+R+ SFLIADG+ P+N
Sbjct: 248 AIMQGVHGNYEIDLFVHLMDAAAEI--LEIENQQQSSLKVIADHIRAVSFLIADGVTPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ +   LG        ++  L  EMG AYPEL   + +IE T++ E
Sbjct: 306 EGRGYVLRRVIRRAVRHGNKLGADSDFFYKMVAPLVAEMGIAYPELKDKQSVIENTIQKE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F KTL +GL LL   L  L   + L+G+ AFKLYDT+G P+D+  DI   RG+  ID
Sbjct: 366 EAQFAKTLAQGLRLLASELEGLQDGDTLSGEAAFKLYDTYGFPVDLTADITRERGIV-ID 424

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ ++ QR RAR       +G  +  + S+ +    T FIGY+ L           
Sbjct: 425 EAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLE---------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-C 533
                       GV+  + A+ Q G   +    G +  VV D+TPFYAE GGQ+G+ G  
Sbjct: 469 ----------QEGVA--IDALYQDGNPADSLTEGMEGVVVLDRTPFYAEGGGQVGELGEI 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+   + D +K  + I +H+ +V  G ++T+ +    +    R   + NHSATHLL
Sbjct: 517 RTATGV-FDVQDTKKSGQAI-IHYGVVTMGEIKTKQTADAQVLSSIRAASAKNHSATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  V+Q GS ++ + LRFD ++ KP++ AE+  IE  VN+ I  N P     
Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSPAEIMRIERLVNEQIQANTPTRIEN 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYE---DGG--VHSSALCGGTHVSSTGEIMLL 708
           M  ++AI  GA AL G KY + VRV+++  +   DG     S  LCGG HV  TG+I +L
Sbjct: 635 MPIDEAIKQGAMALFGEKYGNDVRVLTMGTDSIVDGQRMPFSIELCGGLHVQRTGDIGVL 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+T   A  ++   +++L  LAS LKV +  V  RV  + ++ R
Sbjct: 695 KITSESGIAAGIRRIEAVTAMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754

Query: 769 KL--QLIHAKRKL----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            L  QL   ++K+      N+ D     IA +  +   +S VD K ++++MD ++ K+  
Sbjct: 755 DLEKQLERLEQKIASAQAANLLD-EVQTIAGIPLLISTLSGVDGKSIRTLMDDIKSKLPD 813

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L+G  K+++ ++   V + + DR  A D+ R  A  L GG GGG+P  AQ G P  
Sbjct: 814 SVIVLIG-DKDEQLALAANVAKSVTDRIKAGDIIRYLAGEL-GGKGGGKPDYAQGGAPKS 871

Query: 883 NKADQAIAGVASFL 896
           N +   IA + +++
Sbjct: 872 NNSAAVIAALPAWV 885


>gi|326575283|gb|EGE25211.1| alanyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 893

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/903 (41%), Positives = 529/903 (58%), Gaps = 62/903 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPN 881
             +
Sbjct: 871 ATD 873


>gi|289208781|ref|YP_003460847.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288944412|gb|ADC72111.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 869

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/907 (42%), Positives = 549/907 (60%), Gaps = 56/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +FLEFF+ +GH ++ SS L+P NDPTL+FTN+GMV FK++F G+EK  Y    + 
Sbjct: 4   ADIRRSFLEFFEGHGHTIVSSSPLVPGNDPTLLFTNAGMVQFKDVFLGREKRSYNRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+   L   +
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWQFLTETIGLPPEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITT-----NDNFWSMAETGPCGPCSEIFFDQ 179
           L++TVY+ D++A+ +W     + A++I+RI       +DNFW M +TGPCGPC+E+F+D 
Sbjct: 124 LWVTVYETDDDAYNVWANEIQVPAERIVRIGDKPDGGSDNFWQMGDTGPCGPCTEVFYDH 183

Query: 180 GECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G  + GG PGS  E+G+RYIEIWNLVFMQ+++        LP+ S+DTGMGLER+A VLQ
Sbjct: 184 GPEVEGGPPGSPDEDGDRYIEIWNLVFMQYDRDADGTLNPLPRPSVDTGMGLERLAAVLQ 243

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NY+IDLF+ LI A+ +VTG K +  +  + RVI DH+RS +FLI DG+LP+NEGRG
Sbjct: 244 GVHSNYEIDLFQDLIAAAARVTGAKEQ--DSASLRVIADHIRSIAFLITDGVLPSNEGRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  +   +G  +  +  ++  L   MG A+PEL +A+  +E+ L  E+ +F
Sbjct: 302 YVLRRIIRRAARHGFKVGAQDAFLYQMVGDLVRVMGEAFPELAEAQARVEQVLEKEERKF 361

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TLD+G+ +L+  L  L + +++ G+  F LYDT+G P+D+  DI   RGL  +D+  F
Sbjct: 362 LETLDKGMKILEDDLRDL-EGKVIPGETIFLLYDTYGFPVDLTGDIARERGLE-LDMAGF 419

Query: 419 NQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
             A+ +QR+RARA S   +  G   +I          T F GY+ +       E R    
Sbjct: 420 ESAMADQRARARAASHFSMDDGGLPQIDLE-------TTFSGYETVD-----DEGR---- 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V A+ Q GE VE    G +  VV D+TPFY E+GGQ+GD G   G 
Sbjct: 464 --------------VVALYQNGEPVERLEVGAEGLVVLDRTPFYGESGGQVGDVGTLSGS 509

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+R Q+ D +K+     +H   V  G L    +L   ++   R  +  +HSATHLLH AL
Sbjct: 510 GVRFQVADTRKQG-AAHIHVGQVRAGTLEVGQTLQAAVEGPRRENIRRHHSATHLLHKAL 568

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG HV Q GS + PD LRFD TH +P+T  +L++IE  VN  I  N    TR+M+ E
Sbjct: 569 RDQLGDHVQQKGSLVDPDRLRFDFTHMEPLTDEQLRAIEAQVNAEILANEATDTRVMDIE 628

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+ SGA AL G KY D+VRV+ +        S  LCGGTHV  TG+I L  I SE  + 
Sbjct: 629 SAMESGAVALFGEKYGDQVRVLKIGT------SVELCGGTHVDRTGDIGLFRITSEGGVA 682

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AGIRRIEA+ G+ A   +  Q   L ++A  L+  +G    +V ++ E  R+L  Q+   
Sbjct: 683 AGIRRIEAVAGEVALRWVDEQLGYLDAIADRLRAGRGEAADKVAQLQERSRELEKQIEQL 742

Query: 776 KRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K KL      DL+    ++  V  ++  I  V+ K L+ ++D L++K+   +++L   + 
Sbjct: 743 KGKLASQAGSDLASQAQEVGGVQVLAAKIDGVEPKALRDMVDQLKQKLGKAVVVLGTATG 802

Query: 833 EKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S++  VT+    +F A DL   ++A+V   G GGGRP MA +GG + +K D A+A 
Sbjct: 803 EGKVSLVAGVTKAETGQFKAGDLVGHVAAQV--DGKGGGRPDMAMAGGQSPDKLDAALAS 860

Query: 892 VASFLKK 898
           VA ++++
Sbjct: 861 VADWVRE 867


>gi|261379016|ref|ZP_05983589.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269144550|gb|EEZ70968.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 874

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/915 (41%), Positives = 536/915 (58%), Gaps = 68/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVHSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT      + 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLSIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D   R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDGIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVECRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKSLEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  N +DL   K+           E D+  L+ ++  L  K + 
Sbjct: 744 DLAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFLK 897
            K  + +  V  +++
Sbjct: 856 AKLPEMLGSVEDWVR 870


>gi|326565354|gb|EGE15532.1| alanyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 893

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/918 (40%), Positives = 536/918 (58%), Gaps = 62/918 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + 
Sbjct: 7   NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L +
Sbjct: 67  QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EI
Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++
Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P
Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ + 
Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  
Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  ++ EQR+RAR       +G     + +L +   AT+F+GY+ L         
Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G
Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHL
Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    
Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I
Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L
Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821
           +    K+  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+ 
Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811

Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            GI++L  I     E K ++   V + L  +  A ++ +  ++ L GG GGG+P  AQ G
Sbjct: 812 DGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGNIIKHLSENL-GGKGGGKPDFAQGG 870

Query: 879 GPNGNKADQAIAGVASFL 896
             +     + + G+  ++
Sbjct: 871 ATDVANLPKLMTGLTDWI 888


>gi|121608636|ref|YP_996443.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|205830282|sp|A1WIG8|SYA_VEREI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121553276|gb|ABM57425.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 872

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/907 (41%), Positives = 525/907 (57%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 5   SVADIRKSFLDFFVAKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++Q AW+LLT+ + L  
Sbjct: 65  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLQWAWELLTEVYRLPA 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY +D+EA+ +W +  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 125 ERLLATVYQDDDEAYDIWTREIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 184

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D       G      E+G+R+IEIWN VFMQF          LP   +DTGMGLER+A
Sbjct: 185 FYDHGPGIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAADGSVTPLPAPCVDTGMGLERLA 244

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ+  +NY+IDLF+ LI A+ + TG K  G+  +  RVI DH+R+S+FL++DG+LP +
Sbjct: 245 AVLQQVHSNYEIDLFEQLIAAASRETGEKDLGHKSL--RVIADHIRASAFLVSDGVLPGS 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRIMRRA+ +   LG   P +  L+  L   MG+AYP L   +  I + L++E
Sbjct: 303 EGRGYVQRRIMRRAIRHGYQLGQRAPFLHRLVADLVRLMGAAYPSLRAQQQRIADILKAE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   RG+A +D
Sbjct: 363 EERFFETLAHGMEILDAALD--GGAKLLPGDVAFKLHDTYGFPLDLSADMCRERGVA-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+ A+E Q+++ARA     G    E+   +L+   GA++F GY+ L G         
Sbjct: 420 EAGFHLAMERQKTQARA----AGKFKMER---ALEYTGGASRFTGYEDLAG--------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI   G  V    +GQ   +V D+TPFYAE+GGQ+GD G  
Sbjct: 464 --------------TAKITAIYAAGTSVAALKTGQHGVLVLDRTPFYAESGGQVGDQGLI 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +  HH  +E G L    ++   ++   R     NHSATHL+H
Sbjct: 510 SSGSARFAVDDTLKIKADVHGHHGRLEDGTLNVGDTVQARVNTALRAATMRNHSATHLMH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  +  RFD  H+  ++SAEL+ IE  VN+ I  N P   R+M
Sbjct: 570 QALRAVLGSHVQQKGSLVNAERTRFDFAHNAAVSSAELREIERRVNEEILANQPTQARVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A +SGA  L   KY   VRV+ +        S  LC GTHV  TG+I L  +V+E 
Sbjct: 630 DIEAARSSGAMMLFDEKYGAAVRVLDIG------SSRELCAGTHVQRTGDIGLFKVVAEG 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A + L   ++ +   A  L+     + GR+ +  +  R L+   
Sbjct: 684 GVAAGVRRIEAVTGSHALAWLQQLEDTVNQAADTLRAPVAELNGRISQALDNARALEKEV 743

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L             +I  +  ++  +   D+K L++ MD L+ ++++  I+L  
Sbjct: 744 AALKSRLAASQGQELLARAVQIKGLAVLAATLPGADAKTLRATMDQLKDQLKTAAIVLAA 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A DL    A+ + GG GGG+P MA +GG +      A+
Sbjct: 804 VDGD-KVQLAAGVTADSVGRIQAGDLVNFVARQV-GGKGGGKPDMAMAGGTDAAGLPAAL 861

Query: 890 AGVASFL 896
           A VA ++
Sbjct: 862 ASVAGWV 868


>gi|241759977|ref|ZP_04758075.1| alanine--tRNA ligase [Neisseria flavescens SK114]
 gi|241319431|gb|EER55861.1| alanine--tRNA ligase [Neisseria flavescens SK114]
          Length = 874

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 536/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TTELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+   K   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G +  VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDEGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVHDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  N +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
            K  + +  V  ++
Sbjct: 856 AKLPEVLNSVKDWV 869


>gi|308389728|gb|ADO32048.1| alanyl-tRNA synthetase [Neisseria meningitidis alpha710]
          Length = 885

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 537/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 580 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFL 896
           +K    +  V  ++
Sbjct: 867 DKLPAVLDSVKDWV 880


>gi|325130665|gb|EGC53406.1| alanyl-tRNA synthetase [Neisseria meningitidis OX99.30304]
          Length = 874

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/902 (42%), Positives = 533/902 (59%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
           +K
Sbjct: 856 DK 857


>gi|239816150|ref|YP_002945060.1| alanyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|239802727|gb|ACS19794.1| alanyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 874

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/874 (41%), Positives = 518/874 (59%), Gaps = 59/874 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G++K  Y    
Sbjct: 7   TVADIRKTFLDFFASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++  A++LLTK + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY ED+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLWATVYIEDDEAYDIWTKDIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 187 FYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K  GNN +  +VI DH+R++SFL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNNSL--KVIADHIRATSFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG  +P    L+P L   MG AYP+L+  +  I ETL++E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGEAYPKLVADEKRITETLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G    L G+VAFKL+DT+G PLD+  D+   RG++ +D
Sbjct: 365 EERFFETLANGMEILDAALA--GDARTLPGEVAFKLHDTYGFPLDLSADVCRERGVS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ--FIGYDLLRGSKFMKED 472
              FN A+E+Q++  RA           K       +YG     F GY+ L      +E+
Sbjct: 422 EAGFNAAMEKQKAAGRAAG---------KFKMDRNVEYGGAGNVFTGYEHL------EEN 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+  +G  V++   GQ   VV D TPFY+E+GGQ+GD G
Sbjct: 467 AKVV-----------------ALYFEGAAVQQLKEGQPGIVVLDTTPFYSESGGQVGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +G++  + D QK    +F HH    +G L+   ++   +D   R     NHS THL
Sbjct: 510 VLVAEGVQFGVDDTQKIKADVFGHHGTQTQGTLKVGDTVKAAVDTARRAATMRNHSVTHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  D  RFD  H+  +T  ++  IE  VN  I  N     R
Sbjct: 570 MHKALREVLGAHVQQKGSLVDADKTRFDFAHNAAVTHDQILEIEKRVNAEILANTETHAR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  IVS
Sbjct: 630 VMDMESAQKTGAMMLFGEKYGESVRVLDIG------SSRELCGGTHVGRTGDIGLFKIVS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AG+RRIEA+TG  A  +L   +  ++S+A+ LK     + GR+ ++ E+ R L  
Sbjct: 684 EGGVAAGVRRIEAVTGANALGYLQELEATVQSVAATLKSPAAELQGRLVQVLEQVRALER 743

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
           ++   K KL  +  D    +  DVN +  + +++   D+K L+  MD L+ K+++ +++L
Sbjct: 744 EVGSLKGKLASSKGDELLAQAVDVNGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAVVVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             +    K  V   VT D + +  A +L    A+
Sbjct: 804 AAVDG-AKVQVAAGVTSDTVGKVKAGELVNFVAQ 836


>gi|303245636|ref|ZP_07331919.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302492899|gb|EFL52764.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 880

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/908 (42%), Positives = 526/908 (57%), Gaps = 50/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF   GH+ + SS LIP  DP+L+FTN+GMV FK +F GQ+KP Y+ 
Sbjct: 1   MMTAHEIRAKFLDFFAAQGHQKVASSPLIPREDPSLLFTNAGMVQFKKVFLGQDKPGYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EAF LW+K++GLS D+I R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 DKSRLYATVYQDDDEAFGLWQKVAGLSPDRIYRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G+  + +RY+EIWNLVFMQ++Q    ER  LP+ SIDTGMGLER+A V+
Sbjct: 181 EEVSCGPDCGIGTC-DCDRYLEIWNLVFMQYDQLESGERVALPRPSIDTGMGLERIAAVV 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N+DIDLF+ +I  +  + G+ Y   +  +   RVI DH R+ +FL+ADG++P+NE
Sbjct: 240 QGVHSNFDIDLFQTIIATAASIAGVTYGATDEQDTALRVIADHSRAVAFLVADGVMPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + +L+G ++P +      +   MG AYPEL+  +  +E  +R E+
Sbjct: 300 GRGYVLRRLIRRALRFGKLIGLSDPFLFKTAGTVVEVMGDAYPELVATRDFMERMVREEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERFG TLD+GL +L   L  +    ++ + G  AFKLYDT+G PLDI+ D+   RG+   
Sbjct: 360 ERFGVTLDKGLAILAEELDRMEAAGEKTITGQFAFKLYDTYGFPLDIVNDVAGKRGIT-T 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   +   + EQ++RA+    G G      ++  L E    ++F+GY+ L          
Sbjct: 419 DEDGYKACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYETLTAQ------- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S +   I  +G+ VE   +G+    V   TPFY E+GGQ GD G 
Sbjct: 472 ---------------SRVNALISAEGQAVERLTAGETGYAVCAVTPFYGESGGQAGDVGA 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    +T   K    +  HH  +  G +  +    L +D   R   + NH+ THLL
Sbjct: 517 ITTLTGNATVTGTIKAGPELTAHHITIAAGEILLDQEADLAVDTAVRAATARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV+Q GS +TPD LRFD TH   +T  EL  +ED VN  I  + PV T +
Sbjct: 577 HKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELSRVEDEVNAAILLDAPVTTEV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E A A GA AL G KY D VRVV V     GV S   CGGTH+S+TG+     I++E
Sbjct: 637 LPLEAARAKGATALFGEKYGDTVRVVEVP----GV-SMEFCGGTHLSATGQAGSFLILAE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG RRIEA TG     H+     +L       K   G + GR++++ ++ R L   
Sbjct: 692 SGVAAGTRRIEAATGLNTIKHVREMRGELDESLHAAKAKAGELPGRIKKLQDDIRAL--- 748

Query: 774 HAKRKLQLNVE-------DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K K QL  +       DL     +I  V  +   +   + K L+  MD L+ K+ SG+
Sbjct: 749 -TKEKEQLAAKLASGQGRDLLSGLEEIGGVKVLCAKVDAPNIKALREAMDDLRSKVPSGV 807

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +       K S+++ V++DL  RF A  L +  A    GG GGGRP MAQ+GG N   
Sbjct: 808 VAIAAEQDGGKVSLIVAVSKDLHGRFTAPALIK-EAAAAVGGSGGGRPDMAQAGGTNPAG 866

Query: 885 ADQAIAGV 892
            ++A A V
Sbjct: 867 IEEAFAKV 874


>gi|225075679|ref|ZP_03718878.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens
           NRL30031/H210]
 gi|224952950|gb|EEG34159.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens
           NRL30031/H210]
          Length = 874

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/914 (42%), Positives = 535/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TTELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LPA
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI-DL 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+ +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEEGFNREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K + 
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGSAKLV------AAQIEADAAALREIVTDLTGKSEQ 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDV 855

Query: 883 NKADQAIAGVASFL 896
            K    I  V  ++
Sbjct: 856 EKLPAMIESVKDWV 869


>gi|325128607|gb|EGC51476.1| alanyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 874

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/902 (42%), Positives = 530/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TTELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LPA
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K + 
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AIVLLAAVN-EGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
            K
Sbjct: 856 GK 857


>gi|119899070|ref|YP_934283.1| alanyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|205829981|sp|A1K991|SYA_AZOSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119671483|emb|CAL95396.1| AlaS protein [Azoarcus sp. BH72]
          Length = 885

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/917 (41%), Positives = 534/917 (58%), Gaps = 64/917 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 4   AEIRAKFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L + +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTEVFKLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS EE G+RYIEIWN VFMQF +  +     LPK S+DTGMGLER++ V
Sbjct: 184 DHGPHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG-----MKYEGNNIVN-----HRVIVDHLRSSSFLI 286
           LQ    NY+IDLFK LI ++ +  G     ++   +++ N     ++V+ DH+R+ SFLI
Sbjct: 244 LQGVHANYEIDLFKSLISSAMRAVGTAEALVERARDSMTNTISPSYKVLADHIRACSFLI 303

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG++P NEGRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL   +  
Sbjct: 304 ADGVIPGNEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGEAYPELKAGERR 363

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           + + LR E+ERF  T++ G+ +++G L+ +    + + NGD AFKL+DT+G PLD+  DI
Sbjct: 364 VADVLRQEEERFFATIENGMAIVEGELAAMATAGNTVFNGDTAFKLHDTYGFPLDLTADI 423

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
            C      +D  +F+ A+  Q+ +ARA           K+  +L     AT F GYD L 
Sbjct: 424 -CREREVTVDAAAFDAAMARQKEQARAAG-------KFKMAANLDYDGPATTFHGYDKLE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      + A+ + G  V E V G    VV D TPFYAE+
Sbjct: 476 -----------------------AKGNILALYKDGVAVNELVEGDLGVVVLDHTPFYAES 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ GD G   G      + D  K    +F HH +V+ G L     +   +D   R   +
Sbjct: 513 GGQAGDRGELKGAAGIFGVEDTLKIQASVFGHHGVVKTGKLAVGQGVAARVDTAARAATA 572

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHS THL+H AL  +LG HV Q GS + PD  RFD  H+ P+++ E++ +E+ VN  I 
Sbjct: 573 RNHSVTHLMHKALREVLGPHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNREIL 632

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N      +M  +DA  SGA  L G KY D VRV+S+        S  LCGGTHV+ TG+
Sbjct: 633 ANAATEAAVMALDDAQKSGAMMLFGEKYGDEVRVLSIG------SSKELCGGTHVARTGD 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IV E  + AG+RR+EA+TG+ A  +   Q+ +++ +++ LKV    V  RV  I 
Sbjct: 687 IGLFKIVVEGGVAAGVRRVEAVTGENALRYTQEQERRVQGVSALLKVQPDEVAERVAGIL 746

Query: 765 EEYRKLQLIHAKRKLQLNV---EDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  R L+   A+ K +L     EDL      +     ++  +   D   L+  MD L+ K
Sbjct: 747 DNVRALEKELARLKSKLAASQGEDLVAQAVDVGGAKLLAATLEGADVPTLRETMDKLKDK 806

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           ++S  I+L  ++ + K S++  VT DL  +  A +L    A+ + GG GGGRP MAQ+GG
Sbjct: 807 LKSAAIVLASVA-DGKVSLIAGVTADLTGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGG 864

Query: 880 PNGNKADQAIAGVASFL 896
              +K   A+A V +++
Sbjct: 865 TEPDKLPAALAAVQAWV 881


>gi|253997271|ref|YP_003049335.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983950|gb|ACT48808.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 878

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/903 (42%), Positives = 532/903 (58%), Gaps = 56/903 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF   GHE++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   T+ QK
Sbjct: 14  IRQAFLDFFASKGHEIVSSSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRATSSQK 73

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+LLT+ F L + +L 
Sbjct: 74  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKYAWELLTEVFKLPKDKLT 133

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179
           +TVY ED+EA+ +W  I G+ A++IIRI  N       DNFW M +TGPCGPC+EIF+D 
Sbjct: 134 VTVYAEDDEAYAIWNNIIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFYDH 193

Query: 180 GECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G    GG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER++ VLQ
Sbjct: 194 GAHHFGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERISAVLQ 253

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
               NY+IDLF+ LI A+ + T  K    +I + +V+ DH+R+ SFLIADG++  NEGRG
Sbjct: 254 HVHANYEIDLFQTLIAAAARET--KTADLSIPSLKVLADHIRACSFLIADGVIAGNEGRG 311

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG        ++P L  EMG AYPEL+  +  I E L+ E++RF
Sbjct: 312 YVLRRIIRRAIRHGYKLGVRSAFFHKIVPDLVAEMGDAYPELVSNQARITEILKQEEDRF 371

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +T++ G+ +L+  L+     ++ NG+ AFKL+DT+G PLD+  DI   R +A +D  +F
Sbjct: 372 FETIENGMAILESELA--STKDVFNGETAFKLHDTYGFPLDLTADICRERNVA-VDTDAF 428

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N A+  Q+ +ARA           K+  +L+    AT F GYD L               
Sbjct: 429 NAAMARQKEQARA-------AGKFKMTANLEYDGVATNFHGYDKLE-------------- 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     S+ V A+ + G  V +   G+   VV D TPFYAE+GGQ+GD G   G  
Sbjct: 468 ---------TSATVTALYKDGVAVTKLTEGEVGVVVLDNTPFYAESGGQIGDCGELRGTN 518

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              +  D QK    +F HH +++ G L     +   ++ Q R     NHSATHL+H AL 
Sbjct: 519 GIFEAEDTQKIQATVFGHHGVLKTGTLSVGEQVSARVNTQARTNTMRNHSATHLMHKALR 578

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +  D  RFD  H+ P+T  E+  +E  VN  I  N     R+M+ E 
Sbjct: 579 EVLGEHVQQKGSLVDTDKTRFDFVHTAPMTDDEIAKVEQIVNAEILANAACQARVMDIES 638

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  I SES + A
Sbjct: 639 AQNTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVNRTGDIGLFKITSESGVAA 692

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+EA TG+ A   +  Q   + +LA+ LK     +  +V ++ +  + L+   A+ K
Sbjct: 693 GVRRVEATTGEGALKLINAQQTLISALANDLKAPVNELASKVAQLSDHAKSLEKELARLK 752

Query: 779 LQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L     +DL+    +IA V  ++  +   D+  L+  MD L+ K++S  I+L  +S +
Sbjct: 753 SKLASSQGDDLATQAVEIAGVKVLAATLDGADANALRETMDKLKDKLKSAAIVLASVS-D 811

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S+   VT DL  +  A +L    A  + GG GGG+P MA +GG + ++  QA+A V 
Sbjct: 812 GKVSLAAGVTADLTSKVKAGELVNFVAGQV-GGKGGGKPDMAMAGGSDASQLPQALASVN 870

Query: 894 SFL 896
            ++
Sbjct: 871 DWV 873


>gi|313668028|ref|YP_004048312.1| alanyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313005490|emb|CBN86926.1| alanyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 874

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/902 (42%), Positives = 531/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF++L++A  + TG  +      + +VI DH+RS SFLIADG+LPA
Sbjct: 243 AAVMQHVHSNYEIDLFQNLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L  +   T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYEGQDTEFKGYS----------ER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               + V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TEATVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQDQERLVKDIITETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K + 
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDV 855

Query: 883 NK 884
            K
Sbjct: 856 EK 857


>gi|319790646|ref|YP_004152279.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317115148|gb|ADU97638.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 878

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/911 (42%), Positives = 550/911 (60%), Gaps = 55/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF++ GH  + SS L+P NDPTL+FTN+GMV FK+ F G+E+P ++  T
Sbjct: 4   SADRIRETFLKFFEEKGHARVKSSPLVPKNDPTLLFTNAGMVQFKDYFLGKEEPPFKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+ F L +
Sbjct: 64  SCQKCMRAGGKHNDLENVGRTGRHHTFFEMLGNFSFGDYFKEEAIKFAWELVTEVFKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            RLY++VY EDEEAF++W+ + G+  ++I R+   DNFW+M +TGPCGPCSEI++D+GE 
Sbjct: 124 ERLYVSVYKEDEEAFRIWRDVVGVPQERIYRLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 183

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             C P    GS  + +RY+EIWNLVFMQFE+    +   L K SIDTGMGLER+A+VLQ 
Sbjct: 184 FACGPNCGIGSC-DCDRYLEIWNLVFMQFERDESGKLRPLEKPSIDTGMGLERIASVLQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ DL   L++ + +++G+ Y     +  + RVI DHLR+ +FLI+DG+LPANEGR
Sbjct: 243 VPSNYETDLLFPLVKWASKLSGVPYGRSEKSDTSMRVIADHLRAMTFLISDGVLPANEGR 302

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  + RLLG   P +   +  +   MG AYPEL  ++ L+E  +R E+ER
Sbjct: 303 GYVLRRIIRRASRHGRLLGIKGPFLYSGVKEVVKIMGKAYPELELSRELVERVVRREEER 362

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL+RGL +   ++  L    ++++ G   FKLYDT G P+D++ ++    GL  +D+
Sbjct: 363 FSRTLERGLQIFQEIIDELKSRSEKVIPGSEVFKLYDTFGFPIDLVLEVANDEGLR-VDL 421

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + L+EQR RAR            K W     K GA + +  +L R S         
Sbjct: 422 EGFEKLLKEQRERAR------------KAW-----KGGAQKVVSPELQRLS--------- 455

Query: 476 LCQKPPIDLTNGVSSI-----VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
             + P   L  G   +     V  I++  E+VE    G++  V+ D+TPFY E GGQ+GD
Sbjct: 456 -LEHP--TLFTGYEHLEEYAKVVGILKGEELVESISEGEEATVILDRTPFYPEKGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG   G     ++TD Q   E +  H   V RG L     +   +D + RR ++  H+AT
Sbjct: 513 TGTLEGTDSLCKVTDTQNITEKLIGHKVKVLRGKLSVGDYVEARVDEERRRAITRAHTAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV Q GS + PD LRFD TH +  T  EL+++E+ VN  I +N PV 
Sbjct: 573 HLLHKALKEVLGNHVKQAGSLVLPDRLRFDFTHFEAPTKEELRAVEELVNRWITENYPVK 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  ++A+  GA AL G KY   VRVV V        S  LCGGTHV  +G+I    +
Sbjct: 633 IEEMPYDEALERGAIALFGEKYGSVVRVVDVG-----GVSVELCGGTHVKRSGDIGFFKL 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--EEIWEEYR 768
            SESSI +G RR+EA+ G  A   +  +++ ++ L   L+  +  +  +V   +   + +
Sbjct: 688 TSESSISSGTRRVEAVVGPEALKWVWEKEKLIEELKGALQSPEEQLTAKVERLKEELKEK 747

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGII 825
           + +L   KRKL     D       + N    I ++VD    +EL  + DAL+ K +S  +
Sbjct: 748 ERELEQLKRKLASGKLDELLKNAKEANGFKVITAKVDGLAGRELVDLADALRNKAKSAAV 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           MLVG+ K  KA+++I +T+DL +RF A +L R  A +L  G GGGRP +AQ G  + ++ 
Sbjct: 808 MLVGV-KGGKANLVIALTKDLTNRFKAGELIREVAPIL-QGKGGGRPDLAQGGVKDLSRL 865

Query: 886 DQAIAGVASFL 896
            +A     S L
Sbjct: 866 QEAFDKFYSLL 876


>gi|71275909|ref|ZP_00652192.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon]
 gi|71899253|ref|ZP_00681415.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1]
 gi|170729338|ref|YP_001774771.1| alanyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|205830290|sp|B0U1K9|SYA_XYLFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71163286|gb|EAO13005.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon]
 gi|71730986|gb|EAO33055.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1]
 gi|167964131|gb|ACA11141.1| Alanine--tRNA ligase [Xylella fastidiosa M12]
          Length = 884

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/910 (40%), Positives = 548/910 (60%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYRTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I  G      E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N  +   VI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSLC--VIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+ +QR  ARA     G G   ++          T F+GY+ L+          
Sbjct: 424 MAGFEAAMTQQRKTARAAG-KFGRGV--QLSAERAAMLSPTVFLGYEQLQADGLR----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 476 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 IG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +  DG+RL++TD QK       H   + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVTRIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV+Q GS + PD LRFD +H +PI++A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVAQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV +        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVKMGT------SVELCGGTHITRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    + DL  +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|148244942|ref|YP_001219636.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|205830283|sp|A5CVU0|SYA_VESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146326769|dbj|BAF61912.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 865

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/906 (41%), Positives = 537/906 (59%), Gaps = 58/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F+  GH +  S+SLIP ND TL+F N+GMVPFK++F+G EK  Y    +V
Sbjct: 4   AQIRQKFLDYFESKGHIIESSASLIPHNDKTLLFVNAGMVPFKDVFSGIEKRPYTRAVSV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LTKE +L ++ 
Sbjct: 64  QRCARAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHYAWEFLTKELNLPKKN 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V+D+D EA  +W    G   ++I R    DNFW M +TGPCGP SEIF+D GE I 
Sbjct: 124 LWVSVFDQDNEAEDIWVNEIGFPKNRISRCGAKDNFWQMGDTGPCGPSSEIFYDHGEHIA 183

Query: 185 GGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           GG PG ++E+G+RYIEIWNLVF +F++Q       L    +DTGMGLER+  VLQ K NN
Sbjct: 184 GGPPGHANEDGDRYIEIWNLVFTEFDKQEDGYLKPLAVPCVDTGMGLERLVAVLQHKNNN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEGRGY 299
           YD D F++L++A   V  +  + NNI ++    RVI DH+RS++F+I DG++P+NEGRGY
Sbjct: 244 YDTDGFQNLVKA---VVNLTPKFNNIKDNNASVRVITDHIRSAAFMIVDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + +   +G  +     L   L  E    YPEL QA   +E+ L+ E++RF 
Sbjct: 301 VLRRIIRRGIRHGHKMGIGKVFFYRLASILALEFKDVYPELEQALSKVEKVLKREEQRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+G+ +L+ V+++    EI NG + FKLYDT+G P+D+  DI   R L  ID+  F 
Sbjct: 361 KTLDQGMSILEEVITNFKGSEI-NGKIVFKLYDTYGFPVDLTSDIARERNLT-IDMSGFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEK----YGATQFIGYDLLRGSKFMKEDRKV 475
             + +QR RAR  S            F + EK       T+F+GY  L+           
Sbjct: 419 VEMTKQRDRARQASD-----------FKISEKGVDIAERTEFLGYKQLKN---------- 457

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S+++AI+   E+VE+   G    VV  Q+ FYAE+GGQ+GD G   
Sbjct: 458 -------------VSLIQAIINNNELVEKIEVGDHGIVVLAQSSFYAESGGQIGDKGILS 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              +  ++    K+  G F HH ++ +G+L+   ++   +D ++R+ ++ NHSATHLLH 
Sbjct: 505 NMQVEFRVDHTNKQKSGAFEHHGVLNKGVLKVSDAVQANVDKKSRKCIARNHSATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  V Q GS +  + LRFD ++ K I  ++L+ IE  VN  I  N  V T I N
Sbjct: 565 ALHIVLGKAVMQKGSLVGSEKLRFDFSYDKVIVKSDLERIESIVNRKILGNTKVYTDITN 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A   GA  L G KY D VRV+++   +    S  LCGGTHV+  G+I L  I+SESS
Sbjct: 625 IEGAKKKGAMTLFGKKYGDTVRVLTMGKNE---FSVELCGGTHVNQLGDIGLFRIISESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+TG  A          L  +A   + S   VVG+V ++ ++ ++L  Q+ 
Sbjct: 682 VSAGVRRIEALTGYDAYQFDNRIQNSLNKIAQMTRSSNTEVVGKVTQLIKQQKELEKQIA 741

Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ++K+  N  D   +   ++  +  +S ++  V SK+L++++D L+ K+ S +I+L  +
Sbjct: 742 TFQKKIANNQGDDLIVQAQEVKGIKLLSTVVEGVTSKDLRNIVDKLKDKLSSAVIVLAVV 801

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K S++  VT+DL  ++ A  +    AK + GG G GR  MAQ GG       +A+A
Sbjct: 802 IND-KVSLVTGVTKDLTKQYQARKILNHVAKQI-GGKGDGRSDMAQGGGTKPECLIKALA 859

Query: 891 GVASFL 896
            V S +
Sbjct: 860 SVKSLI 865


>gi|297616546|ref|YP_003701705.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144383|gb|ADI01140.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 877

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/903 (42%), Positives = 548/903 (60%), Gaps = 51/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FL++F +NGH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MRTSSEIRKMFLDYFAENGHTVVESSSLVPANDPTLLFTNAGMNQFKDVFLGIDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG YFK  AI  AWDLLT+   L
Sbjct: 61  ATSSQKCVRAGGKHNDLETVGRTARHHTFFEMLGNFSFGDYFKREAIFYAWDLLTRVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++T++ +D+EAF+LW++I+G+S  KI+R+   DNFW+M +TGPCGPCSEI +D+G
Sbjct: 121 PPERLWVTIFTDDDEAFELWQEIAGISPQKIVRMGEKDNFWAMGDTGPCGPCSEIIYDRG 180

Query: 181 ECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E      P  +    + +R++EIWNLVFMQF +        LP+ SIDTGMGLER+ ++L
Sbjct: 181 EKYRCDAPLCALGVCDCDRWLEIWNLVFMQFNRDEAGNLTPLPRPSIDTGMGLERITSIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +N+D DLF  +IQ  E++TG KY+ G      RVI DH R+ +FLI DG+LP+NEG
Sbjct: 241 QGVDSNFDTDLFIPIIQKIEEMTGKKYDRGPGGFPFRVIADHSRACTFLIGDGVLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ + RLLG   P +  ++  +  +M  +YP+L+  +  + + +R E+E
Sbjct: 301 RGYVLRRILRRAVRFGRLLGIEAPFLYRMVGVVVDKMKDSYPDLVDKQEFVAKVVRMEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           RF  TL+ G+  +  ++      G+ +I +G  AF LYDT+G PLD+ +D+    GL G+
Sbjct: 361 RFFVTLNEGIRKVGEIIERCQAEGRKDI-SGQDAFMLYDTYGFPLDLTEDMAEENGL-GV 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +   FN+ +EEQR RAR    G  +   EK    + E   +T F GY  L          
Sbjct: 419 NKEDFNRLMEEQRERARRAQKGEDAFAQEKRLAEMLEGIPSTDFEGYQRL---------- 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                     LT      ++AI+   E ++    G  + +V  QTPFYAE+GGQ+ D G 
Sbjct: 469 --------FTLTQ-----IQAIISGDEELDLIRDGGAI-LVLAQTPFYAESGGQVADKGV 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G      + DV KK  G  +H+  V+ GIL     +   +D Q R   + NH+ATHLL
Sbjct: 515 IKGSEGTFIVDDV-KKVAGWILHYGRVQ-GILVKNEEVQAEVDEQRRLATARNHTATHLL 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G H  Q GS + P+ LRFD +H  P+T  E+++IED VN  I     V   +
Sbjct: 573 HRALRMVVGEHAQQKGSLVEPERLRFDFSHFAPLTEEEIQAIEDIVNRKIWDLEKVEVDL 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A   GA AL G KY D VRV+S+     G  S  LCGGTHV +TG+I L  I++E
Sbjct: 633 ATLEEAKQKGAMALFGEKYGDEVRVISI-----GDFSIELCGGTHVENTGQIGLFKIINE 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRK 769
            SI AG+RR+EA+TG RA  +L  Q+ +LK+ AS LKV    +  RVE    E+ E  ++
Sbjct: 688 GSIGAGLRRVEALTGPRALDYLNAQERELKTAASVLKVPAQELAQRVESLSRELKESEKE 747

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIM 826
           ++ +  K   Q   E L   +  +VN +  +++E+  ++   L+   + L+ K+   +++
Sbjct: 748 IEALKNKLARQEAAELL--QQAFEVNGVKVLVAEMSGQDMAVLRQNGEMLRDKLGRAVVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G +++ K ++++ V ++L DR +A ++   +AKV+ GGGGGGR  MAQ+GG    K  
Sbjct: 806 L-GSARDGKVNLVVFVAKELTDRLHAGEIVSAAAKVV-GGGGGGRADMAQAGGKIPEKLG 863

Query: 887 QAI 889
           +A+
Sbjct: 864 EAL 866


>gi|325144845|gb|EGC67133.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240013]
          Length = 874

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  D+    G+  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTTESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
            K
Sbjct: 856 GK 857


>gi|121635253|ref|YP_975498.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|205830172|sp|A1KV20|SYA_NEIMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120866959|emb|CAM10719.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325138605|gb|EGC61164.1| alanyl-tRNA synthetase [Neisseria meningitidis ES14902]
 gi|325142798|gb|EGC65170.1| alanyl-tRNA synthetase [Neisseria meningitidis 961-5945]
 gi|325198706|gb|ADY94162.1| alanyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 874

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+   K   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
            K
Sbjct: 856 GK 857


>gi|325134725|gb|EGC57364.1| alanyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325205670|gb|ADZ01123.1| alanyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 874

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  D+    G+  +
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
            K
Sbjct: 856 GK 857


>gi|325267938|ref|ZP_08134587.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324980624|gb|EGC16287.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 873

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/916 (40%), Positives = 546/916 (59%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y+  TT
Sbjct: 3   TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYKRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++P+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  G ++ L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+ +E QR+RARA           K    L      T+F GY+         ++ 
Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYTGADTEFTGYEK------RSQET 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD G 
Sbjct: 466 KII-----------------ALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGF 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R ++ D QK    +      V  G L+   ++   ID   R  +  NHS THL+
Sbjct: 509 IVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV    
Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVET 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+SE
Sbjct: 629 MSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AGIRR+EAITGQ A +    Q+  +K++ + +K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGIRRVEAITGQAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  N +DL   K+           + D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIDADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTNKVKAGDLIKFAAEQI-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFLKK 898
           ++    +    S++++
Sbjct: 856 SQVGAMLDSAESWVRE 871


>gi|325132719|gb|EGC55402.1| alanyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 881

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 10  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 70  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 190 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L++
Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+   K   L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 369 EESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNIE-L 425

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 469 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 516 IFSGENRFEVLDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 576 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 636 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 805 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862

Query: 883 NK 884
            K
Sbjct: 863 GK 864


>gi|309378363|emb|CBX23009.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 874

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/914 (42%), Positives = 536/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI LAW+ LT  K  ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHLAWEFLTSPKCLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+E + +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLPTVYAEDDEPYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+LPA
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVIADHIRSCSFLIADGVLPA 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L  +   T+F GY         + + 
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYEGQDTEFKGYSE------RQTEA 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KVL                 A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 466 KVL-----------------ALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVSVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K + 
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDV 855

Query: 883 NKADQAIAGVASFL 896
            K    I  V  ++
Sbjct: 856 EKLPAMIDSVKDWV 869


>gi|222100169|ref|YP_002534737.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|221572559|gb|ACM23371.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 864

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/906 (40%), Positives = 549/906 (60%), Gaps = 67/906 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  + T QK
Sbjct: 9   IREAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRIATCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + + +L+
Sbjct: 68  CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180
           ++VY+EDEEAF++W +  GL   KI+R+   DNFW  A  TGPCGP +EIF+D G     
Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRLGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               EC P    G      R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   +
Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   +N+D DLF+ +I+A E++TG+ Y+ +    ++ RVI DH+R+ +FLI++G+ P+N
Sbjct: 238 MQGVYSNFDTDLFQPIIKAIEELTGVSYKTDEEKDISIRVIADHIRAITFLISEGVFPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRAM +  LLG  EP +  ++ A+  +MG  YPE+++ K +++E L SE
Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMNEPFLYKVVDAVVEKMGKVYPEIVRGKDMVKEVLSSE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + RF KTL++G+ + D ++   GK   ++   AF+LYDT+GLPL++  +I   +G+  ID
Sbjct: 358 ENRFLKTLEQGMRIFDELVEKKGK---IDSQDAFRLYDTYGLPLELTLEIAKEKGVE-ID 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F++ ++EQ+ ++R     +      +   SL E +  T+F GY+ L       E   
Sbjct: 414 VKDFDRYMKEQQRKSREAMGKVEFAKRYEYLESLPEGF-KTEFTGYERLE-----DEAET 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           VL                  I ++   +EEA     VEVVF +TPFYAE GGQ+ D G  
Sbjct: 468 VL------------------IAKENRPLEEAKEKDTVEVVFSRTPFYAEKGGQVSDVGTV 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++  V +  EG+ VH   V +GILR    + L +D + R+    NH+ATHLLH
Sbjct: 510 EWESGEGRVEYVFEALEGVIVHRIRVLKGILRRGQKVFLKVDRKRRKDTMRNHTATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P+ LRFD TH + +++ E+K +ED VN+ I Q +PV  R  
Sbjct: 570 AALRKVLGEHVRQAGSLVAPERLRFDFTHYRALSAEEIKKVEDMVNEWIMQAIPVEVRYT 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+AI SG  AL   KY D VRVV V        S  LCGGTHV +TG+I L  IVSE 
Sbjct: 630 SYEEAIRSGVIALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIVSEE 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RR+EA+TG      +   ++ +  L   L   +  ++ RVE + E+ R+L+   
Sbjct: 685 SVSSGVRRVEAVTGFYTLELIRRYEDVMTRLKELLGAGENEIINRVESLREKVRELE--- 741

Query: 775 AKRKL---QLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             R+L   +++ E +S  K+ D       +   V+SK L  + D +  + +SG+++L   
Sbjct: 742 --RRLSQGRVSEERISEKKLNDGTKLFYGVFEGVESKHLGGIADNVLNREKSGVVVLFS- 798

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E K S+++ V+ DL+++++A  +AR  AK L GG GGGR + AQ+GG +  + D+ + 
Sbjct: 799 RFEDKVSLVVKVSNDLIEKYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERLDEVLN 857

Query: 891 GVASFL 896
            +  FL
Sbjct: 858 RLEEFL 863


>gi|326566717|gb|EGE16856.1| alanyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
          Length = 887

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/897 (41%), Positives = 525/897 (58%), Gaps = 62/897 (6%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
            L FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + QKCVRA
Sbjct: 7   LLTFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSSQKCVRA 66

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYIT 128
           GGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E    L + RLY+T
Sbjct: 67  GGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPKDRLYVT 126

Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGE 181
           VY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EIF+D GE
Sbjct: 127 VYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEIFYDHGE 186

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GGLPG+  E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++ ++Q  
Sbjct: 187 HIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERISAIMQGV 246

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P+NEGRG
Sbjct: 247 HGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIPSNEGRG 306

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ +  E+E+F
Sbjct: 307 YVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAILKEEEQF 366

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  ID   F
Sbjct: 367 AKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT-IDEAGF 425

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             ++ EQR+RAR       +G     + +L +   AT+F+GY+ L               
Sbjct: 426 ELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G    + 
Sbjct: 467 ----------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELGEISTES 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D QK  + I +HH +V+ G +    S    +  Q R   + NHSATHLLH AL 
Sbjct: 517 GVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHLLHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    I++ + 
Sbjct: 576 TILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVEILDIDS 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I+SE  I
Sbjct: 636 AKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKIISEQGI 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L+    K
Sbjct: 696 SAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLE----K 751

Query: 777 RKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSGIIML 827
           +  +LN +  S H  + ++ + +I         ++ +D+K L+++ D ++ K+  GI++L
Sbjct: 752 QIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLADGIVIL 811

Query: 828 VGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             I     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G  +
Sbjct: 812 ASIYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGATD 867


>gi|302877754|ref|YP_003846318.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302580543|gb|ADL54554.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 873

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/908 (41%), Positives = 538/908 (59%), Gaps = 56/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF   GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y    + 
Sbjct: 4   SEIRQQFLDFFASKGHAIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYVRAASS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L + R
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWELLTEVFKLPKER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           LY+TVY ED+EA+ +W K  GL A ++IRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LYVTVYAEDDEAYDIWTKEMGLEASRVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GGLPG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMGLER++ V
Sbjct: 184 DHGEHISGGLPGTPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERISAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ    NY+IDLF+ LI A+ + T       +  + +V+ DH+R+ SFLIADG++P NEG
Sbjct: 244 LQHVHANYEIDLFQALINAAARETNCS--DMDSPSLKVLADHIRACSFLIADGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RG+VLRRI+RRA+ +   LG  E     L+P L  +MG AYPEL  A+  ++  L+ E+E
Sbjct: 302 RGFVLRRIIRRAIRHGYKLGAREAFFYKLVPDLVAQMGVAYPELTAAQDRVKGVLKLEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  T++ G+ +L+  L  + +  + + NG+ AFKL+DT G P+D+  D+    G+  +D
Sbjct: 362 RFFATIENGMAILEADLLAMKQAGNTVFNGETAFKLHDTFGFPVDLTADVCREHGVT-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F+ A+ +Q+ +ARA           K+  +L+ +  AT F GY+ L           
Sbjct: 421 VAAFDAAMAQQKQQARAAG-------KFKMAANLEYEGPATLFHGYETLEH--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +  V A+ + G  V E   G    VV D TPFYAE+GGQ GD+G  
Sbjct: 465 --------------AGCVLALYKDGVSVGELNEGDTGVVVLDNTPFYAESGGQTGDSGEL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G      + D QK    +F HH +++ G L     +   ++   RR    NHS THL+H
Sbjct: 511 RGSHGIFAVEDTQKIQAAVFGHHGVLKTGKLLVGNGVQARVNMAARRATERNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  D  RFD  HS+P+T +E+  +E  VN  I  N    +R+M
Sbjct: 571 KALREVLGAHVQQKGSQVDADKTRFDFVHSQPVTDSEVLRVEFIVNAEILSNAASQSRVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             EDA  +GA  L G KY D VRV+++        S  LCGGTHV+ TG+I L  IVSES
Sbjct: 631 GIEDAQQTGAMMLFGEKYGDEVRVLNIG------SSIELCGGTHVARTGDIGLFKIVSES 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG+ A   +  Q  +L+++A  +K       GR+ ++ +  + L  +L
Sbjct: 685 GVAAGVRRIEAVTGEGALDLIQMQQRQLRAVADAVKAQPHEAAGRIAQLLDHQKSLEKEL 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL     D    +  D+N    ++ ++   D+  L+  +D L+ K++S +I+L  
Sbjct: 745 TALKSKLASAQGDELVAQAQDINGVKVLAALLPGADAAILRETLDKLKDKLKSAVILLAS 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K +++  VT D   +  A +L  ++A+ + GG GGGRP MAQ+GG        A+
Sbjct: 805 VT-DGKVALIAGVTADQTAKVKAGELVNMAAQKV-GGKGGGRPDMAQAGGTQPEHLAAAL 862

Query: 890 AGVASFLK 897
           A V  +++
Sbjct: 863 ASVTDWVR 870


>gi|323705255|ref|ZP_08116830.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535157|gb|EGB24933.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 877

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/899 (40%), Positives = 561/899 (62%), Gaps = 52/899 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SL+P ND +L+  N+GM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPSRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK  +L + 
Sbjct: 66  CQKCIRT----PDIDRVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T+Y+ D+EAF++W K+ GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVTIYENDDEAFEIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF++  +     LPK +IDTGMGLER+AT++QE  
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFDKDAEGNYNPLPKPNIDTGMGLERIATIMQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++ G+KY  +  + V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITDYVGKMAGVKYGADKKSDVSLRVITDHIRGVTFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  Y +LLG   P +  ++  +      AYPE+ + K  I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARYGKLLGLDRPFLYDVVDVVVEHYKGAYPEIQERKEYIKKVIKKEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +LDG ++ L   GK+ +L G  AFKLYDT+G P+++ ++IL   G++ +D  
Sbjct: 361 ETIDQGLDILDGYINDLKASGKN-VLEGSKAFKLYDTYGFPIELTKEILSESGMS-VDED 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE QR RAR+      +   + I+ ++K+    T+F+GY+        K D KVL
Sbjct: 419 GYQKELENQRLRARSSRKEDNALWEKDIYSTMKDI--ETKFVGYEAF------KSDAKVL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                            AI++  E+V  A +G++V ++ D TPFYAE+GGQ+GD+G    
Sbjct: 471 -----------------AIIKDDELVNSAEAGEEVNIILDMTPFYAESGGQVGDSGIIKS 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + + + I D +K     FVH   +ERGIL    ++   ID +NR   + NH+ATHLLH A
Sbjct: 514 EDVYINIKDCKKAGGNKFVHIGTIERGILNVGDTVEAIIDEKNRMSTARNHTATHLLHSA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   +G HV Q GS +TPD LRFD TH + +T+ E+K IED VN+ I +++ V   IM++
Sbjct: 574 LRKFIGDHVHQAGSLVTPDRLRFDFTHYQALTAYEIKMIEDEVNEKIYESIGVSIDIMSQ 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++AI  GA AL   KY D VRVV++       +S  LCGGTHV++T +I    I++ES +
Sbjct: 634 DEAIKKGAMALFQEKYGDVVRVVNI-----SDYSKELCGGTHVTNTIQIGAFKIIAESGV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEA+TG  A   L  + E + ++   LKV++ ++V R+ ++ +  + L  QL  
Sbjct: 689 AAGVRRIEAVTGLGALEFLNKKGELISNIEQILKVNEKDIVDRIADLSQTIKDLERQLEQ 748

Query: 775 AKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K+ L++ D   +   D+N   F+S  ++++D  ELK + D L+ +++S +I+L  I 
Sbjct: 749 LKSKVVLSMSDKLINSAEDINGIKFVSATLNDLDVDELKMMGDILKDRLKSTVIILATI- 807

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++K + + + T+D ++R  N  ++ R   +V   G GGGR  MAQ  G N  K + A+
Sbjct: 808 RDEKINFVGMATKDAIERGINVGNIIREICQV-ADGKGGGRADMAQGVGNNLEKINIAL 865


>gi|134298636|ref|YP_001112132.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|205830077|sp|A4J2K4|SYA_DESRM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134051336|gb|ABO49307.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 878

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/905 (41%), Positives = 556/905 (61%), Gaps = 51/905 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L FF++ GH++LPS+SLIP NDP++++T +GMVPFK  FTGQ  P YQ VTT QK
Sbjct: 7   IREKYLRFFEQRGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYQRVTTCQK 66

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D+++VGRT RHHTFFEMLGNFSFG YFKE  I  AW+ +TKE +L + +L+
Sbjct: 67  CIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKESIIPWAWEFITKELNLPKEKLW 122

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           IT+Y +D+EAF++W K+ G+ +++I+R+  + NFW +   GPCGPCSEI+ D GE    G
Sbjct: 123 ITIYQDDDEAFEIWNKVVGIPSERIVRLGKDTNFWEIG-VGPCGPCSEIYVDLGEARGCG 181

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P      + +R++EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ   +N+
Sbjct: 182 SPECQVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLENKGIDTGMGLERVASVLQGVASNF 241

Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D D+F+ ++  +  + G +Y  + +  +  +VI DH R+ +F ++DG LP NEGRGYV+R
Sbjct: 242 DTDIFREIMDFTANLAGQEYGQKADIDLALKVIADHCRAVTFAVSDGALPGNEGRGYVIR 301

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+ + R+LG  EP +  +  A+  +M  AYPEL Q    +   +R+E+ERF +TL
Sbjct: 302 RLLRRAVRFGRVLGVREPFLYKVAQAVIKQMQDAYPELKQKAEHVLRVIRTEEERFLETL 361

Query: 363 DRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             G  +L  +++     G  EI  GD AFKLYDT G PL++ Q+I   +GLA +D+  FN
Sbjct: 362 AAGSDILSALINEAKASGASEI-TGDDAFKLYDTFGFPLELTQEIAEEQGLA-VDVEVFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            A+EEQR RAR+        +   + + +L+E+ G T+FIGY  L               
Sbjct: 420 AAMEEQRKRARSARQETEYLSERGVLYKALREELGETRFIGYSALEAD------------ 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S + A+++ G     AV+G++VE+V D TP YAE+GGQ+ D     G  
Sbjct: 468 -----------SNIMALLKDGMQEISAVAGEEVEIVLDVTPCYAESGGQVADHAILRGPD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + ++IT V K  EG+ +H   V  GI++   S+   +D   R+  + NHSATHLLH AL 
Sbjct: 517 LEVEITSVNKPVEGLVIHRGKVLSGIIKRHDSVKAIVDQPRRQDTARNHSATHLLHKALK 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD TH   +TS EL+ IE+ VN+ +  NL +     +   
Sbjct: 577 EVLGDHVNQAGSLVEPDRLRFDFTHYAAVTSEELRRIEEIVNEAVLSNLSIEVFETSLSK 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GAAAL G KY  +VRVV +     G  S  LCGGTH++ST E+ L  I +E+S+ A
Sbjct: 637 AKEMGAAALFGEKYGKQVRVVKM-----GDFSMELCGGTHLTSTAEVGLFKIFNETSVGA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKR 777
           G+RRIEA+TG     +L  ++E+L+ +AS +K     +V R E + ++ + L Q I A R
Sbjct: 692 GLRRIEAVTGTGVLKYLKAKEEQLEEIASVIKSPMHELVRRSEALVQQNKSLEQEIEALR 751

Query: 778 K--LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
               +  V+D+  +  +  +V  ++ +++  D   L+ ++D L+ K+ SG+I+L G +  
Sbjct: 752 NKLAKSEVQDILGNIKRAKEVPVLASVVAAPDMDNLRGMVDMLRDKMGSGVILL-GSTAG 810

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K +++  VT+DL  +  +A +L +  AK++ GGGGGGRP MAQ+GG N  K  +AI  V
Sbjct: 811 EKVNLVAAVTKDLHGQGLHAGNLVKEIAKMV-GGGGGGRPDMAQAGGKNPEKLQEAIDQV 869

Query: 893 ASFLK 897
              ++
Sbjct: 870 CRVVE 874


>gi|293399698|ref|ZP_06643850.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291609949|gb|EFF39072.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 881

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 10  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 70  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 469 Q-------------TESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 863 DKLPEMLASAEGWL 876


>gi|59801613|ref|YP_208325.1| hypothetical protein NGO1254 [Neisseria gonorrhoeae FA 1090]
 gi|75432448|sp|Q5F7C4|SYA_NEIG1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|59718508|gb|AAW89913.1| putative alanyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 874

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|255021551|ref|ZP_05293594.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254968939|gb|EET26458.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 880

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/907 (42%), Positives = 551/907 (60%), Gaps = 50/907 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FL+FF   GHE++PSS L+P NDPTL+FTN+GMVPFK+ F G E+  Y+   + Q
Sbjct: 5   AIRQAFLDFFAARGHEIVPSSPLVPRNDPTLLFTNAGMVPFKDTFLGLEQRPYRRAVSAQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           +C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L   RL
Sbjct: 65  RCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGYAWTFLTEVLKLPPERL 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++TV+ ED EA  +W +  G+   +  R    DNFWSM +TGPCGPCSEIF+D G  IPG
Sbjct: 125 WVTVFAEDREAEDIWLREMGIDPARFSRCGEKDNFWSMGDTGPCGPCSEIFYDHGPEIPG 184

Query: 186 GLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G PGS + +G+RYIEIWNLVFMQ+++ +      LPK S+DTGMGLER+A VLQ   NNY
Sbjct: 185 GPPGSPDADGDRYIEIWNLVFMQYDRDSSGRLTPLPKPSVDTGMGLERLAAVLQGVHNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D DLF+ LIQA+  ++G  Y  +   +   RV+ DH+R+ SFL+ADG+LP+NEGRGYVLR
Sbjct: 245 DTDLFQPLIQAAADISGKVYGADPAADTSLRVLADHVRACSFLMADGVLPSNEGRGYVLR 304

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ + R LG  +     L+P L + MG AYPEL +A+  I+  LR E+ RF +TL
Sbjct: 305 RIIRRAVRHGRKLGLGDIFFHRLVPPLVSVMGEAYPELRRAERDIQGHLRREEARFRETL 364

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RGL LL+  +  L     + G+V F+L DT+G P+D+  DI   RGLA +D+  F  AL
Sbjct: 365 ERGLELLEEAIGGLAPGAPIPGEVIFRLSDTYGFPVDLTADIARERGLA-LDMPGFEAAL 423

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQR R+RA  +G G    ++++  L  +  AT+F+GY    G                 
Sbjct: 424 AEQRQRSRAAWVGSGEVKADRLYHDLAMELPATEFLGYGGCSG----------------- 466

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRL 541
                 +  V A+++ G+ V+   +G+   V+ DQTPFY E+GGQ+GD G      G+R 
Sbjct: 467 ------AGRVLALIRDGQRVDVLRAGETGSVILDQTPFYGESGGQVGDRGLLTDAAGLRF 520

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + D QK    + +H   VE G LR    +   +D   R   + +HSATHLLH AL T+L
Sbjct: 521 VVQDTQKPVASLHLHLGRVESGELRLGHIVHAEVDSDARAATAAHHSATHLLHAALRTLL 580

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHV Q GS +TP+ LRFD +H +P+T A+L+S+E+ VN  +  N+    +++    A +
Sbjct: 581 GSHVQQKGSLVTPERLRFDFSHPEPLTLAQLQSLENWVNAAVRANVVADVQVLPIAQAQS 640

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY + VRV+ +     G +S   CGGTHV +TG+I    I++ES + AGIR
Sbjct: 641 LGALALFGEKYGEEVRVLRL-----GDYSLEFCGGTHVQATGDIGCFKILAESGVAAGIR 695

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---------- 771
           RIEA  G  A + +   +++L++ A+ L V+   +  R+ +  E  R+L+          
Sbjct: 696 RIEAAAGAAAIAAVQLDEQRLRAAAALLHVAPAELDQRLAQTLERQRQLEKELERLRQKL 755

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A  +L   VED     IA V  +   I  +D K L+ ++D L+ +I  GI++L G+ 
Sbjct: 756 AAQAGERLASAVED-----IAGVPVLVQQIDGMDGKGLRELVDRLRSQIPHGILLLAGVQ 810

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            +K A ++  V+++L DR  A  L    A+V+ GG GGGR  +AQ+G  +  +   A A 
Sbjct: 811 NDKVA-LIAAVSKELTDRVAAGPLVHAVAEVM-GGKGGGRADLAQAGAEHPEQLTAAFAL 868

Query: 892 VASFLKK 898
             ++L++
Sbjct: 869 ARAWLEQ 875


>gi|217969991|ref|YP_002355225.1| alanyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|217507318|gb|ACK54329.1| alanyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 873

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/908 (42%), Positives = 534/908 (58%), Gaps = 58/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 4   AEIRDAFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L + +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVFKLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 124 LWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183

Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS EE G+RYIEIWN VFMQF +  +     LPK S+DTGMGLER++ V
Sbjct: 184 DHGDHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ    NY+IDLF+ LI+A+ + T       +  + +V+ DH+R+ SFLIADG++P NEG
Sbjct: 244 LQHVHANYEIDLFQALIKAAARETCSA--DMDSPSLKVLADHIRACSFLIADGVIPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        ++P L  EMGSAYPEL   +  I + LR E+E
Sbjct: 302 RGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGSAYPELKDGERRIMDVLRQEEE 361

Query: 357 RFGKTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           RF  T++ G+ ++      +   GK ++ +GD AFKL+DT G PLD+  DI C      +
Sbjct: 362 RFFATIENGMAIVEAELAAMEAAGK-KVFDGDTAFKLHDTFGFPLDLTADI-CREREVTV 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D ++F+ A+  Q+ +ARA           K+  +L+     T F GY LL      +E  
Sbjct: 420 DALAFDAAMARQKEQARA-------AGKFKMAANLEYDGPETTFHGYTLL------EEKG 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
            +L                 A+ + G  V E + G+   VV D TPFYAE+GGQ+GD G 
Sbjct: 467 NIL-----------------ALYKDGVPVNELLEGEMGVVVLDHTPFYAESGGQVGDRGE 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + D QK    +F HH +V  G L     +V  +D   R   + NHS THL+
Sbjct: 510 LRAAAGIFGVEDTQKIQAAVFGHHGVVRTGKLAVGQGVVARVDVAARAATARNHSVTHLM 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS + PD  RFD  H+ P+++ E++ +E+ VN  I  N      +
Sbjct: 570 HKALREVLGAHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNREILANAATQAEV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  E A  SGA  L G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV E
Sbjct: 630 MALEAAQKSGAMMLFGEKYADEVRVLSIGT------SKELCGGTHVARTGDIGLFKIVGE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AGIRR+EAITG+ A  +   Q+ +++ +++ LKV    V  RV  I +  R L  +
Sbjct: 684 GGVAAGIRRVEAITGENALRYAQEQERRVQGMSALLKVQPDEVAERVAGILDNVRALEKE 743

Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL  +  D       +I  +  ++ ++   D+  L+  MD L+ K++S  I+L 
Sbjct: 744 LARLKSKLAASQGDELVSQAVEIKGIRVLAALLEGADAPTLRDTMDKLKDKLKSAAIVLA 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG        A
Sbjct: 804 AVA-DGKVSLIAGVTADHTAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPENLAAA 861

Query: 889 IAGVASFL 896
           +AGV  ++
Sbjct: 862 LAGVKDWV 869


>gi|332112510|gb|EGJ12303.1| alanyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 877

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/914 (42%), Positives = 539/914 (58%), Gaps = 62/914 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+TFL+FF+  GH ++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 2   KASEIRSTFLKFFESKGHTIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYTRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L +
Sbjct: 62  TSQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWELLTEHFKLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY ED+EA+ +W K+ GL A++I+RI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 DKLWATVYAEDDEAYDIWLKVIGLPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS E+ G+RYIEIWN VFMQF +        LPK S+DTGMGLER+A
Sbjct: 182 FYDHGPDVAGGPPGSPEQDGDRYIEIWNNVFMQFNRTEDGTMHRLPKPSVDTGMGLERLA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----RVIVDHLRSSSFLIADG 289
            VLQ   +NY+IDLF +L+ A+      +  G   V+      +VI DH+R+ +F +ADG
Sbjct: 242 AVLQHVHSNYEIDLFVNLLAAARSAV--EAAGGQDVDAESPSLKVIADHIRACAFTVADG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           I+P NEGRGYVLRRI RRA+ +   LG  +P    L+ AL  EMG AYPEL + KL I E
Sbjct: 300 IIPGNEGRGYVLRRIARRAIRHGYKLGARKPFFHTLVEALAVEMGEAYPELRRDKLRITE 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L++E+ERF +T+  G+ +L+G L+      +++G+ AFKL+DT G PLD+  D+   RG
Sbjct: 360 VLKAEEERFFQTIAHGMEILEGALASGAT--VIDGETAFKLHDTFGFPLDLTADVCRERG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F+ A++ QR +AR       S    K+   L     AT F GY+ L      
Sbjct: 418 VT-VDGAGFDAAMQRQREQAR-------SKAKFKMAQGLAYDGEATTFHGYEHL------ 463

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                 +C+           + V AI   G  V +A +G  V VV D TPFYAE+GGQ+G
Sbjct: 464 ------VCEH----------AKVSAIYVDGTPVTKAQAGDDVVVVLDHTPFYAESGGQVG 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G       RL + D  K    +  H A +  G +    +LV  +D + R +   NHSA
Sbjct: 508 DRGELRNGRARLVVEDTVKIQAQVHGHQARIVEGEIEIGDTLVARVDAELRAKTIRNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG HV Q GS +TP+  RFD  H+ P+T+A++  +E  VN  I  N   
Sbjct: 568 THLMHKALREVLGGHVQQKGSLVTPERTRFDFAHNAPVTAAQIAQVEALVNAEILANAAT 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             R M  ++A   GA  L G KY + VRV+ +    GG  S  LCGGTHV  TG+I L  
Sbjct: 628 QARTMAIDEAQKLGAMMLFGEKYGETVRVLDI----GG--SRELCGGTHVQRTGDIGLFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I +E  + AGIRR+EA+TG  A ++L   +  L  +A+ LKV+   V  RV+ + E+ R 
Sbjct: 682 IAAEGGVAAGIRRVEAVTGDNALAYLQQLEGALGGVAATLKVTPAEVPARVDAVLEQLRA 741

Query: 770 L--QLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  ++   K +L     D    S   +  +  ++  ++  D+K L+  MD L+ K++S  
Sbjct: 742 LDKEITALKGRLASAQGDELLASAVDVKGIKVLAATLAGADAKALRETMDKLKDKLKSAA 801

Query: 825 IMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I+L  +    K  +   VT DL+   +  A +L    A  + GG GGG+P +A +GG + 
Sbjct: 802 IVLAAVDG-AKVQLAAGVTGDLVAGGKLKAGELVNFVAGQV-GGKGGGKPDLAMAGGTDA 859

Query: 883 NKADQAIAGVASFL 896
               QA+A VA ++
Sbjct: 860 AALPQALASVAGWV 873


>gi|218780784|ref|YP_002432102.1| alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|218762168|gb|ACL04634.1| Alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 875

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/897 (41%), Positives = 540/897 (60%), Gaps = 47/897 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R+ FLE+F+KN H ++ SSSL+P +DPTL+FTN+GMV FK  F G++K  Y    T 
Sbjct: 4   NEVRSAFLEYFKKNDHRVVKSSSLVPQDDPTLLFTNAGMVQFKRTFLGEDKRDYTRAATS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+L+WDLL  +F L   +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKELAIELSWDLLVNKFGLPADK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y +D+EA  LW+   G+  ++I+R+   DNFWSM +TGPCGPCSEI  D+GE   
Sbjct: 124 LWVSIYLDDDEAGLLWRDKIGVPEERIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGEAFG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVFMQ+ +    +   LP+ SIDTGMGLER+ ++LQ    
Sbjct: 184 CDSPDCAVGCDCDRYLEIWNLVFMQYNRDETGKMTPLPRPSIDTGMGLERICSILQNADT 243

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NY  DLF  +     +++G K      + V  +VI DH R+++FL+ DGILP+NEGRGYV
Sbjct: 244 NYGTDLFTPIFNRIGELSGKKLGDSKTDDVCMKVIADHSRAAAFLVGDGILPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA+ Y R LG+ +  +   + A+C  MG AYP+L + +  I   + +E+ RF +
Sbjct: 304 LRRIMRRAIRYGRQLGFNKSFLHETVAAVCDSMGGAYPDLTEGRSFITNVIVNEENRFSE 363

Query: 361 TLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           TLD+GL +L+  L  +   G+ EI +G+V FKLYDT+G P+DI++D++  +G+  +D   
Sbjct: 364 TLDKGLSVLNDALGEMEAKGEKEI-SGEVIFKLYDTYGFPVDIVEDVVRDKGIV-LDRDG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   ++EQ+ ++R+     G+G   + + SL  +    +F GY    G           C
Sbjct: 422 FETRMKEQKEKSRSTVAFEGAG---EAFASLSSQGIKCEFQGYHGTSG-----------C 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
            K            V  +V+ G+ V+EA +G  V VV + TPFY E+GGQ+GD G    D
Sbjct: 468 SK------------VLLVVKDGKEVQEAQAGDAVSVVTEATPFYGESGGQMGDLGVITAD 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ L++    K   G+ +H   V +G +    ++ L +D   R+  + NH+ATHLLH AL
Sbjct: 516 GLELEVVKTLKDPTGLIIHEGKVVKGKIAKGQNVDLKVDEAARQATARNHTATHLLHAAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++G HV Q GS + P+ LRFD TH  P+T  E   IE  VN+ I  NL V T  M+ +
Sbjct: 576 REVVGDHVKQAGSLVGPERLRFDFTHFSPLTPEETVKIETLVNERIRDNLDVNTVEMDAD 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A  SGA AL   KY D VRVVS+E       S  LCGGTH   +G++    IV ESS+ 
Sbjct: 636 QARESGAMALFEEKYGDTVRVVSMEG-----FSKELCGGTHTERSGDVGFFVIVGESSVA 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAK 776
           AG+RRIEA+TG  A  ++ G    L  ++  LK     +  ++E++  + ++ +  I+A 
Sbjct: 691 AGVRRIEALTGAGAVEYVHGLMSNLNKVSGLLKEKPETLPDKIEKLLAQNKQQEKEINAL 750

Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIIS--EVDSK-ELKSVMDALQKKIQSGIIMLVGISK 832
           +         S   +I +V     I    EVDS   ++ + D  + K+QSGI++L G   
Sbjct: 751 KAKIAAKASESVDDEIREVRGAKMIAKKVEVDSPAAMRDLADKFRDKLQSGIVVL-GSEV 809

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             KA ++++VT+DL  +F A ++ +  AK + GGGGGGRP MAQ+GG       QA+
Sbjct: 810 NGKALLIVMVTKDLTKQFQAGNIIKHVAKEV-GGGGGGRPDMAQAGGSKPENLSQAM 865


>gi|239908964|ref|YP_002955706.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|239798831|dbj|BAH77820.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 880

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/903 (42%), Positives = 530/903 (58%), Gaps = 50/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F   GH+++ SS L+P  DPTL+FTN+GMV FK +F GQ+KP Y  
Sbjct: 1   MMTATEIRAKFLEYFASKGHQVVASSPLVPREDPTLLFTNAGMVQFKKVFLGQDKPGYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAITFAWEFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EA  LWKKI+GLS ++I R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLSDERIFRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G+  + +RY+EIWNLVFMQF+Q     R  LP+ SIDTGMGLER+A V+
Sbjct: 181 EEVGCGPNCGIGTC-DCDRYLEIWNLVFMQFDQIEPGNRVALPRPSIDTGMGLERIAAVV 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N+DIDLF+ +I ++ Q+ G+ Y  N+  +   RVI DH RS +FL+ADG++P+NE
Sbjct: 240 QGVHSNFDIDLFQTIISSAAQIAGVTYGDNDEHDTALRVIGDHSRSVAFLLADGVMPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + +L+G ++P +      +   MG AYPEL+ ++  +E  +R E+
Sbjct: 300 GRGYVLRRLIRRALRFGKLIGLSDPFLYKTAGVVVDVMGPAYPELVASREFMERVVREEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERFG TLD+GL +L   L  +    +  + G+ AFKLYDT+G PLDI+ D+   RG+A  
Sbjct: 360 ERFGVTLDKGLAILAEELDRMAAAGETTITGEFAFKLYDTYGFPLDIVNDVAGKRGMAA- 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   +   + EQ++RA+    G G      ++  L E    ++F GY  L          
Sbjct: 419 DEDGYRVCMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFTGYTELTAK------- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S +   I  +G+ VE  ++G+   +V   TPFY E+GGQ GD G 
Sbjct: 472 ---------------SRVNALISAEGQAVERLIAGETGYMVSAVTPFYGESGGQAGDVGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + +    K    +  HH  V++G +  +    L +D   R   + NH+ THLL
Sbjct: 517 VTTLTGDVAVLGTMKAGPELTAHHIQVQKGEILLDQEAELVVDAAVRAATARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +TPD LRFD +H   +T+ EL  +ED VN  I  + PVV   
Sbjct: 577 HKALKNVLGGHVNQAGSLVTPDRLRFDFSHVSAMTAEELARVEDEVNAAILLDAPVVVEE 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E A A GA AL G KY D VRVV V        S  LCGGTH+ +TG+    YI+SE
Sbjct: 637 LGIEAARAKGATALFGEKYGDVVRVVEVP-----GVSMELCGGTHIGATGQAGSFYILSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG RRIEA+TG  A  H+     +L      +K   G +  RV+++ +E + L   
Sbjct: 692 SGVAAGTRRIEAVTGVNALRHVREMRGELDEALKTVKAKPGELGARVKKLLDEIKAL--- 748

Query: 774 HAKRKLQLNVE-------DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K K QL  +       DL     +I  V  +   +     K ++  MD L+ K+ SG+
Sbjct: 749 -GKDKEQLAAKLASGQGRDLMAGLEEIGGVKVLCARVDAPSVKAMREAMDDLRSKLPSGV 807

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +    +  K S+++ V++DL DRF A  L +  A    GG GGGRP MAQ+GG N   
Sbjct: 808 VAIASEQEGGKVSLIVAVSKDLHDRFTAPTLIK-DAAAAVGGSGGGRPDMAQAGGTNPAG 866

Query: 885 ADQ 887
            D+
Sbjct: 867 IDE 869


>gi|294669536|ref|ZP_06734603.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308449|gb|EFE49692.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 873

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/915 (41%), Positives = 542/915 (59%), Gaps = 68/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++P+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  I E L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  G ++ L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+ +E QR+RARA           K    L      T+F GY+         +D 
Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYTGADTEFTGYEK------RSQDT 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A+ +  E VEE  +G+   VV +QTPFYAE+GGQ+GD G 
Sbjct: 466 KII-----------------ALYKGSEAVEELQAGEVGVVVLEQTPFYAESGGQVGDVGF 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +    R ++ D QK    +      V  G L+   ++   ID   R  +  NHS THL+
Sbjct: 509 IVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS    +  RFD++H++ I++ E+  +E  VN  I  N+PV    
Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHTQGISAEEIAEVERRVNAAIIANVPVKVET 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  SGA  L G KY D VRV+++     G +S  LCGGTHV+ TG+I    I+SE
Sbjct: 629 MSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AGIRR+EAITG  A +    Q+  +K++ + +K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  N +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFLK 897
            K  + +  V  ++K
Sbjct: 856 VKLPEMLGSVEDWVK 870


>gi|225023233|ref|ZP_03712425.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC
           23834]
 gi|224944057|gb|EEG25266.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC
           23834]
          Length = 873

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/902 (41%), Positives = 535/902 (59%), Gaps = 68/902 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++P+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  G ++ L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-NL 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+ +E QR+RARA           K    L      T+F GY+         +D 
Sbjct: 419 DEDGFNREMEAQRARARAAQ-------NFKANAQLDYTGADTEFTGYEK------RSQDT 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A+ +  E V+E   G+   VV +QTPFYAE+GGQ+GD G 
Sbjct: 466 KII-----------------ALYKGSEAVDELQVGEAGVVVLEQTPFYAESGGQVGDVGF 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +      V  G L+   ++   ID   R  +  NHS THL+
Sbjct: 509 IFAGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDNIMRNHSVTHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS    +  RFD++H + I + E+  +E  VN  I  N+PV    
Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGINAEEIAEVERRVNAAIIANVPVKVET 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+SE
Sbjct: 629 MSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AGIRR+EAITG  A +    Q+  +K++ + +K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  N +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NK 884
           ++
Sbjct: 856 SQ 857


>gi|237755762|ref|ZP_04584366.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692072|gb|EEP61076.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 876

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/895 (41%), Positives = 546/895 (61%), Gaps = 51/895 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+   + QK
Sbjct: 9   IRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRAASCQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   + + +L 
Sbjct: 69  VFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLKIPKEKLL 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V++ED+EAF++W K  GL   KI R+   DNFWSM +TGPCGP SEI++D+GE   G 
Sbjct: 129 VSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGEKF-GS 187

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
               +E+  RY+EIWNLVFMQ+ +  K     LP  SIDTGMGLER+A+VLQ   +NYD 
Sbjct: 188 PEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVDSNYDT 247

Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           DLFK +IQ +E+V+G +Y  N  + +  RVI DHLR+ +FLI+DG+LPANEGRGYVLRRI
Sbjct: 248 DLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGYVLRRI 307

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ Y + L   +P +   +  +  +M +AYPELIQ +  I+   +SE+E+F KTL R
Sbjct: 308 IRRALRYGKNLSIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFIKTLKR 367

Query: 365 GLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
            + +L  ++    K+    L G+ AFKLYDT+G P+D+M++IL   G    D+I F+  L
Sbjct: 368 SMDILYQMIEQARKENRRHLTGEEAFKLYDTYGFPIDLMEEILKDEGFT-FDLIEFHNLL 426

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQ+ RAR  S    S   + ++ +LK K    QF+GY+ L       E+ KVL      
Sbjct: 427 EEQKERARK-SWKSQSKEIKPVYLTLKNKLPENQFVGYETLTS-----ENSKVL------ 474

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                      AI++  ++V+ A  G+ VE+V D TPFY E GGQ+GD G   GD    +
Sbjct: 475 -----------AIIKGDQLVDTAKEGEDVEIVLDITPFYPEKGGQVGDRGIIEGDEFLFE 523

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D Q   +G+ VH   V  G ++    +   +D + R  +  +H+ATHLLH AL  +LG
Sbjct: 524 VLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKVDKERRENIMRHHTATHLLHAALRNVLG 583

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS ++ + LRFD TH + +T  ELK++E+ VN  I +N  VV + M  E+A+ S
Sbjct: 584 DHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYEEALKS 643

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY D VRV+S      G+ S  LCGGTHV  TG+I    I+SES++ +G RR
Sbjct: 644 GAMAIFEEKYADVVRVIS-----AGI-SKELCGGTHVKRTGDIGYFKILSESAVSSGTRR 697

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRK 778
           IEA+ G +A    + +   +K L+  L   +  ++ RV     +I E+ R+++ +  K  
Sbjct: 698 IEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENLRKKLA 757

Query: 779 L-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           L      LN+ +    K+A V+     +  ++  EL+ + D L++K+   +I++     E
Sbjct: 758 LSNINENLNIIEKEGFKVAYVS-----VENLNPNELREIADHLRQKLGKSVILVASKDAE 812

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           K K + ++ V+++L + + A D+ +       GG GGGRP  AQ G  + +K  Q
Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVK-KVASAVGGSGGGRPDFAQGGINDTSKLSQ 866


>gi|261364444|ref|ZP_05977327.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288567357|gb|EFC88917.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 873

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/916 (41%), Positives = 542/916 (59%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     +L 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++P+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  G ++ L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+ +E QR+RARA           K    L      T+F GY+         ++ 
Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYTGADTEFTGYEK------RSQET 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD G 
Sbjct: 466 KII-----------------ALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGF 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +      V  G L+   ++   ID   R  +  NHS THL+
Sbjct: 509 IFAGENRFRVEDTQKIKAAVHGQFGSVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV    
Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVET 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  SGA  L G KY D VRV+++     G +S  LCGGTHV+ TG+I    I+SE
Sbjct: 629 MSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AGIRR+EAITG  A +    Q+  +K++ + +K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  N +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFLKK 898
            K  + +  V  ++++
Sbjct: 856 AKLPEMLGSVEGWVRE 871


>gi|156743640|ref|YP_001433769.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|205830195|sp|A7NQA5|SYA_ROSCS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156234968|gb|ABU59751.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 905

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/911 (40%), Positives = 527/911 (57%), Gaps = 71/911 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y   TT 
Sbjct: 7   AAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRATTA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK FDL   R
Sbjct: 67  QKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIPMAWELLTKVFDLPVER 126

Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           L+ TV++       D+EA +LW   +G   ++++R    DNFW MA+ GPCGPCSEI   
Sbjct: 127 LWFTVFEGDDEVPPDDEAAQLWVA-AGADPERVLRFGRKDNFWVMADAGPCGPCSEITIF 185

Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ +      G + +   Y+EIWN VFMQFE+   Q    L + S+DTGMGLERMA V+
Sbjct: 186 IGDDLKEMSAKGVNSDDPNYVEIWNNVFMQFERSTMQP---LHRPSVDTGMGLERMAMVM 242

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           Q   + YD DLF  LI+    + G     Y   ++   R + DH R+ +FLIADG+LP N
Sbjct: 243 QGVHSTYDTDLFIPLIERQLALLGADEPTYRA-HVAPFRAVADHSRAVAFLIADGVLPGN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GR YVLRRI+RRA+   R +G+ +P +  +   +  +MG+ YPEL +    I ET+  E
Sbjct: 302 TGRSYVLRRILRRAVYQGRTVGFEKPFLADVAAVVIEQMGAVYPELRERADFILETVDLE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F +TL  G+ +L  V+  +      ++ GD AF L DT+G PLD+ Q I    GL  
Sbjct: 362 ERQFLRTLSGGVSILKSVIERVRAVGGTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT- 420

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   + + +EEQR+R R  +         + W  +      T+F GY  + G       
Sbjct: 421 VDEAGYERRMEEQRARGR-RAAQFKRAADAEAWADI--DLPPTRFTGYLGVSG------- 470

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S  V+A++  G+ V EAV+GQ+V++  D TPFYAE+GGQ+GDTG
Sbjct: 471 ----------------SGTVQALIVAGDQVAEAVAGQQVQIALDSTPFYAESGGQIGDTG 514

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             IG   R +I DVQ+   G+ VH+ +VE G +    ++   +D   R  +  +H+ATHL
Sbjct: 515 VLIGPRGRARIDDVQRPVPGVIVHYGVVEEGAIAVYETVEAQVDSVRRAAIMRSHTATHL 574

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG H +Q GS + PD LRFD TH++P+T  +L+ IE  VN  I  + PV  +
Sbjct: 575 LHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPVTPEQLREIERRVNAWIRADTPVAWQ 634

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSV---------------EYEDGGVH--SSALCG 695
            +  + A+ +GA AL G KY D VR+V++               E +  G    S  LCG
Sbjct: 635 ELPYQAALEAGAIALFGEKYGDVVRMVTIGCVNGNDALSPAAIAERQRAGFRMCSRELCG 694

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV  +GEI L  IVSESS+ AG+RRIEA+TG  A   +  Q   L ++A+ +      
Sbjct: 695 GTHVGRSGEIGLFRIVSESSVAAGVRRIEALTGAEAEQWVDAQIATLHNIAARVGAPPSQ 754

Query: 756 VVGRVE----EIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKEL 809
           +  R+E    E+ +  R L  +HA R+ + N+E L  +   + D+ F++  +   D+  L
Sbjct: 755 LGERIEALLAELKQRQRALDELHA-RQARSNLEGLLANVQAVGDIRFLAAQVEAPDTARL 813

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           + + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ GG G
Sbjct: 814 REMGDWLRDKLGSGVVVLAAVI-DGKAQILAMATPDLAGRRIHAGNLVKALAPIV-GGSG 871

Query: 869 GGRPHMAQSGG 879
           GGRP MAQ+GG
Sbjct: 872 GGRPDMAQAGG 882


>gi|308274548|emb|CBX31147.1| Alanyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 875

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/899 (42%), Positives = 546/899 (60%), Gaps = 45/899 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FLE+F+K+ H+++ SSSL+P  DPTL+FTN+GMVPFK  F G+EK  Y    + 
Sbjct: 4   SDIRRQFLEYFKKHDHQIVRSSSLVPVEDPTLLFTNAGMVPFKRTFLGEEKRGYVRAASS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+A++ AWDLL   F +   +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEKAVEYAWDLLVTGFGIPVDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++VY +D++A  +W K +G+S D+I+R    DNFWSM +TGPCGPCSEI  D+GE   
Sbjct: 124 LWVSVYLDDDQAHDIWHKNAGVSEDRIVRFGDKDNFWSMGDTGPCGPCSEILIDRGEKYG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      E +RY+EIWNLVFMQFE+    +   LP+ SIDTGMGLER+A+V+Q    
Sbjct: 184 CGKPDCKVGCECDRYLEIWNLVFMQFERDASGKMTPLPRPSIDTGMGLERIASVVQNVPT 243

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DL   +I+ +EQ++  +   +++  V  +VI DH R+++FLI DGILP+NEGRGYV
Sbjct: 244 NYDTDLIIPIIRKTEQLSQKRLGDSSVSDVAMKVIADHSRAAAFLICDGILPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA+ Y R +G  +P +      +   M  AYPE   A+  I   +++E+ RF +
Sbjct: 304 LRRIMRRAIRYGRNIGLVKPFLHETSQVVIETMKDAYPEFEGAEAFISNVIKNEEARFSE 363

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD GL LL+  LS +       ++GD+ FKLYDT+G P+D+++D++    L  +D+  F
Sbjct: 364 TLDNGLRLLNDTLSEIKAKGLNTISGDIIFKLYDTYGFPVDVVRDVVRDENLF-LDMDGF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N A++ Q+ ++R  S+   SG TE  + +L       +F+GYD          D KVL  
Sbjct: 423 NAAMKNQKEKSR--SVATFSGITEA-YKNLSANRLIPEFVGYDK------QISDSKVLL- 472

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                           IV+ G+   EAV+G  +E+V ++TPFY E+GGQ GD+G      
Sbjct: 473 ----------------IVKDGKETAEAVAGSDIEIVTEETPFYGESGGQTGDSGIISSSN 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           ++++I D  K A GI +H   +  G +    S+ L++D + R   + NH+ATH+LH  L 
Sbjct: 517 LKIEIADTIKDAAGIIIHKGKIITGTVSKGQSVTLSVDNKRRSATANNHTATHILHFILK 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q GS ++ + LRFD TH   + S  L+ IE  VN+ I +N       M+ E 
Sbjct: 577 RILGDHVKQAGSFVSSERLRFDFTHFSQVDSDTLEKIETLVNERIRENALTCIEEMDAEK 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL   KY D VRV+S+     G  S  LCGGTH   TG I L  I++ESS+ +
Sbjct: 637 AFKSGATALFEEKYGDVVRVISL-----GEFSKELCGGTHTDRTGNIGLFKIIAESSVAS 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLIHAK 776
           G+RRIEA+TG  A +++    + L   A  +K     +  +VE+  I ++  + +L   K
Sbjct: 692 GVRRIEALTGAAALNYIQQNMKTLNETARIVKEKPEALPQKVEKMLIQQKAYEKELEKTK 751

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833
            K+     D   ++I  +N +  +  +V   +   L+ + D  + KI+SGI++L G +  
Sbjct: 752 AKIASRAADDMDNEIKSINGVKVLAKKVLADNPAALRDLADKFRDKIKSGIVVL-GSAAG 810

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K  ++++VT+DL  +++A ++ +     + GGGGGGRP MAQ+GG    K D+A+AG 
Sbjct: 811 SKVFLIVIVTKDLAGKYHAGNIVK-QVSSVVGGGGGGRPDMAQAGGSIPEKLDEALAGA 868


>gi|221066868|ref|ZP_03542973.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711891|gb|EED67259.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 874

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/845 (42%), Positives = 505/845 (59%), Gaps = 54/845 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+F+   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+  W+LLTK F L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L  TVY ED+EA+ +WK + GL A++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS EE G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T    E  +  + +VI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRET--HTEDLSTPSLKVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I   L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQQAHITSVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+  ARA           K+  +L+       F+GYD L       E  K
Sbjct: 422 EAGFNAAMQHQKETARA-------AGKFKMDRALEYTGQGNTFVGYDKL------AESAK 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           ++                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 IV-----------------ALYADGVSVSELKAGQNGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D   R     NHS TH++H
Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  +  N P   R+M
Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTPTDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V ES
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVVGES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIE ITG+ A ++L   +  +   A+  K     +  R+    ++ + L  ++
Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPAAELTNRIGGALDQIKALEKEI 745

Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    + ADVN    ++  +   D+K L+  MD L+ K+ + +I+L  
Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805

Query: 830 ISKEK 834
           +  +K
Sbjct: 806 VDGDK 810


>gi|325140755|gb|EGC63269.1| alanyl-tRNA synthetase [Neisseria meningitidis CU385]
          Length = 881

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 10  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 70  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 190 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERI 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L   GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 369 EESRFAQTLETGMALLENALVKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 469 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 516 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 576 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 636 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 805 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862

Query: 883 NKADQAIAGVASFL 896
           +K    +  V  ++
Sbjct: 863 DKLPAVLDSVKDWV 876


>gi|116623844|ref|YP_826000.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122253309|sp|Q01XA0|SYA_SOLUE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116227006|gb|ABJ85715.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 878

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/911 (41%), Positives = 535/911 (58%), Gaps = 71/911 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF + GH ++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y    + QK
Sbjct: 6   IRQRFLDFFAERGHRVVRSSSLVPANDPTLLFTNAGMNQFKDVFLGQEKRDYVRAASSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWDL+TK++ L + +LY
Sbjct: 66  CVRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKADAIAYAWDLITKDYGLPKEKLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TV+ ED+EA +LW+K++G+   +I R+   DNFW M ETGPCGPCSEI +D G  I   
Sbjct: 126 VTVFREDDEAEELWQKVTGIPKSRIFRLDEKDNFWQMGETGPCGPCSEIHYDLG--IEAA 183

Query: 187 LPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            PG   E      G R++EIWNLVFMQ+++    +   LP+ SIDTGMGLER+A +LQ K
Sbjct: 184 EPGREHEQFPDDAGGRFVEIWNLVFMQYDRDQSGKLNPLPRPSIDTGMGLERIAAILQGK 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
             NYD DL   +I+ + ++ G+    +   +   R++ DH R++ FLI DG++P+NEGRG
Sbjct: 244 ITNYDTDLIYPIIEHAAEIFGVTPGADTRTDTVLRIVADHARATEFLIHDGVVPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+IMRRA+   R++G  +P +  L   +   M   YPEL+++   +    + E+ R+
Sbjct: 304 YVLRKIMRRALRNVRMIGIEDPFLYKLTGFVGELMKGPYPELLESIQRVARVTKDEEHRY 363

Query: 359 GKT-LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
             T L    V  D + S  G    + G ++FKLYDT+GL LD  +D+    GLA ID  S
Sbjct: 364 ATTFLVAERVFNDAIKSIQGN--TIPGALSFKLYDTYGLALDEQEDMAREHGLA-IDRES 420

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  +E+QR RARA   G         +  L E+ G T+F+GY  L  +           
Sbjct: 421 FDTEMEQQRERARASWKGAEKAAVTPAYQKLVEQ-GRTKFLGYSELEAA----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CA 534
                      S +V  IV + E V++  +G K E+V DQTPFYAE+GGQ+GD G    A
Sbjct: 469 -----------SRVVGLIVDK-ESVQQVPAGAKAELVLDQTPFYAESGGQVGDHGILYSA 516

Query: 535 IGDGIRLQITDVQKK---AEGIFVHH-----AIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            G+    ++ DV+       G+ VH       I     LR E+++ L      R     N
Sbjct: 517 AGE----KVADVETAFPGVPGLTVHRIAALAPIAVGDTLRAEVAVPL------RDATRRN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH +L T+LG HV Q GS + P  LRFD TH   +  AEL+ +E  +N  I +N
Sbjct: 567 HTATHLLHASLRTVLGKHVKQAGSIVDPGRLRFDFTHYAGLDHAELEEVERLMNQEILRN 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T I+  E AIA+GA AL G KY D+VRVVSV        S  LCGGTHV  TG+I 
Sbjct: 627 TAVQTDILPLEQAIATGAMALFGEKYGDQVRVVSVPG-----FSRELCGGTHVQRTGDIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           +  IV E SI AG+RRIEAITG+ A          +K +A  +KVS+  ++  +E++   
Sbjct: 682 VAKIVYEGSISAGVRRIEAITGEAALRQYQETSGAVKRVADMVKVSEPALIEHIEKMIAN 741

Query: 767 YRKL--QLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R L  Q+   K KL    +   D     I  V  ++  +  +D  +++++ D+L+ K +
Sbjct: 742 ERALEKQVEQLKNKLAQAAVGSLDAEARTIKGVKVVAAHLDGMDRAQMRALADSLRNKWK 801

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L  + ++   +++  VT+DL  + +A  LA   A+ + GG GGGRP MA++GG +
Sbjct: 802 SAVVVLASV-EDGNVAIISAVTKDLTAKVHAGKLASSLAQAV-GGKGGGRPDMAEAGGKD 859

Query: 882 GNKADQAIAGV 892
            +  D+A+  V
Sbjct: 860 PSCLDEALTAV 870


>gi|240122334|ref|ZP_04735290.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268680920|ref|ZP_06147782.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621204|gb|EEZ53604.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 874

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|260441692|ref|ZP_05795508.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 874

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|291045073|ref|ZP_06570781.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011076|gb|EFE03073.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 881

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 10  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 70  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 863 DKLPEMLASAEGWL 876


>gi|56416520|ref|YP_153594.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81599193|sp|Q5PBJ0|SYA_ANAMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56387752|gb|AAV86339.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 882

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/769 (46%), Positives = 468/769 (60%), Gaps = 48/769 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS + +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G     +N + HRVI DH+R+++FLI++G+ P NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---DNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLEKEIGGLSPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + EQ++R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFNKGMGEQKARSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
            C            + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   
Sbjct: 467 CCS---------TKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 G-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G        G  +      +KA  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 518 GVSGVKNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY++  VRVVS+        S  LCGGTHV  TG+I  
Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V
Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 740


>gi|316983845|gb|EFV62825.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76]
 gi|325199806|gb|ADY95261.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 874

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L   GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALVKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
           +K    +  V  ++
Sbjct: 856 DKLPAVLDSVKDWV 869


>gi|240079700|ref|ZP_04724243.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 874

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|268595847|ref|ZP_06130014.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268549635|gb|EEZ44654.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 881

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 10  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 70  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 863 DKLPEMLASAEGWL 876


>gi|134093868|ref|YP_001098943.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|205830068|sp|A4G2S9|SYA_HERAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|133737771|emb|CAL60816.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans]
          Length = 869

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/906 (41%), Positives = 535/906 (59%), Gaps = 58/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF+  GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K  Y   T+V
Sbjct: 4   SEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRATSV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  +W+LLTK + L   +
Sbjct: 64  QACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALMWSWELLTKVYGLPGDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEIF+
Sbjct: 124 LLATVYIEDQEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEIFY 183

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G  I GG PGS  E+G+RYIEIWN VFMQF+         LP   +DTGMGLER+A +
Sbjct: 184 DHGPHIAGGPPGSPDEDGDRYIEIWNNVFMQFDMAEDGTVKPLPAPCVDTGMGLERLAAI 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+ID F  LI+A+ + T  K   NN +  +VI DH+R+++FL+ADG++P+NEG
Sbjct: 244 LQGVHSNYEIDTFAALIKAAGRETNTKDLTNNSL--KVIADHIRATAFLVADGVIPSNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV RRI+RRA+ +   LG  +P    L+  L  +MG AYP+L      I E L++E+E
Sbjct: 302 RGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLQADAQRITEVLKAEEE 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT G PLD+  D+ C      +D  
Sbjct: 362 RFFETLANGMEILDAALA--GGVKVLPGEVAFKLHDTFGFPLDLSADV-CREAGVSVDEA 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKV 475
            F  A+E+Q++  RA     G    E+          A ++ G  ++  G + ++ED  V
Sbjct: 419 GFAAAMEKQKAAGRA----AGKFKMER----------AVEYTGAGNVFTGYENLQEDATV 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           +                  +  +G  V++   GQ   VV D TPFYAE+GGQ+GD G   
Sbjct: 465 V-----------------GLYFEGTAVQQLKEGQAGIVVLDTTPFYAESGGQVGDQGFVS 507

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G++  + D QK    ++ HH +  +G L+    +   +D   R     NHS TH++H 
Sbjct: 508 AEGVQFGVEDTQKIKADVYGHHGVQTQGTLKVGDKVQAAVDGARRAATMRNHSVTHIMHK 567

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  +  RFD  H+ P+T  ++  IE  VN  I  N     R+M+
Sbjct: 568 ALREVLGEHVQQKGSLVDAEKTRFDFAHNAPVTHEQILEIEKRVNAEILANSDTQARVMD 627

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V ES 
Sbjct: 628 IESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVVGESG 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IH 774
           + AG+RRIEAITG  A S+    +  + S A+ LK     +  R+ ++ ++ + L+  I+
Sbjct: 682 VAAGVRRIEAITGANALSYFQDLEATVHSAAATLKSPPAELQPRLAQVLDQVKTLEREIN 741

Query: 775 A-KRKLQLNVED--LS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A K KL  +  D  LS   +I  +  ++  +   D+  L++ MD L+ K+++  I+L  +
Sbjct: 742 ALKGKLASSQGDELLSQAVEIKGIKVLAAKLENADAGTLRTTMDTLKDKLKTAAIVLAAV 801

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K S++  VT D   +  A +L    A+ + GG GGGR  MAQ+GG + +    A+ 
Sbjct: 802 N-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRADMAQAGGTDASGLPAALQ 859

Query: 891 GVASFL 896
           GVA+++
Sbjct: 860 GVAAWV 865


>gi|116749953|ref|YP_846640.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|205830235|sp|A0LLA3|SYA_SYNFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116699017|gb|ABK18205.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 885

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/913 (41%), Positives = 530/913 (58%), Gaps = 66/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF + GH ++ SSS+IP +DP+L+FTN+GMV FK  F G+EK  Y    
Sbjct: 2   KASEIRKAFLDFFAQRGHSVVKSSSVIPHDDPSLLFTNAGMVQFKRTFLGEEKRPYNRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE A++ AW  LT++  L +
Sbjct: 62  TSQKCMRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAVEYAWRFLTEDMGLPR 121

Query: 123 RRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            +LY T+++         DEEA   W +   L AD+I+   T DNFWSM +TGPCGPCSE
Sbjct: 122 EKLYATIHEGDSEMRLGPDEEARGFWARY--LPADRILTFPTKDNFWSMGDTGPCGPCSE 179

Query: 175 IFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           I  DQG  +  G P      + +R++E+WNLVFMQF ++       LPK SIDTGMGLER
Sbjct: 180 ILIDQGAHVGCGKPDCRPGCDCDRFLELWNLVFMQFNRKEDGTMEPLPKPSIDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +A V+Q+  +NYD DLF  +     +++G +Y  +    V+ +VI DH R+++FLI DG 
Sbjct: 240 VAAVIQKVPSNYDTDLFAPMRAKIAELSGYRYGTDPEKDVSVKVIADHGRAAAFLIGDGA 299

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + R LG   P +  +  A+   M  AYPEL++++  I   
Sbjct: 300 LPSNEGRGYVLRRVLRRALRHGRFLGLDRPFLSEVAVAVMESMQDAYPELLESRNFITRV 359

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCA 407
           + +E+ERF +TLD GL LL   +  L +DE    + G + FKLYDT+G P+DI+ D+  A
Sbjct: 360 ILNEEERFNETLDNGLRLLQNEIRRL-RDEGAGTIPGALIFKLYDTYGFPIDIITDM--A 416

Query: 408 RGLA-GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           R L   +D   F   +E+Q+ ++R H  G G     + +  L  +  +T+F+GYD L   
Sbjct: 417 RDLDFKVDEAGFADLMEKQKEQSRMHWKGSGEREVSEAYRQLSAEGVSTRFVGYDTL--- 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S + A+V+ G+ VEEA +G  VEVV  +TPFY  AGG
Sbjct: 474 --------------------SAQSTIAALVRDGQAVEEAPAGTDVEVVTSETPFYGAAGG 513

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G  +G   R+ ++D  K    + VH   VE G LR   ++ L +D   R   +++
Sbjct: 514 QVGDQGVIVGPSSRVIVSDTLKLPGDLIVHVGKVESGRLRVGETVRLEVDQALRGDTALH 573

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH  L  +LG HV Q GS + PD LRFD TH   I+  EL  IE  VN+ I  N
Sbjct: 574 HTATHLLHSVLRRVLGDHVKQAGSMVAPDRLRFDFTHFAAISRDELAEIERLVNEQIRVN 633

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             +  R MN ++A+ +GA AL   KY DRVR+V +        S  LCGGTH   TG+I 
Sbjct: 634 RDLQVREMNLDEALKTGAMALFEEKYGDRVRMVEIPG-----FSRELCGGTHTHRTGDIG 688

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  +  E SI +G+RRIEA+ G+RA  +L  Q   L   A  LK     V  RVE++   
Sbjct: 689 LFVVTQEMSIASGVRRIEALAGRRALDYLGRQQSVLHQAAGLLKAGPFEVAERVEKLLAN 748

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDAL 816
            ++++     ++L+     L+  + AD          V  +   +   D K L+ + D  
Sbjct: 749 QKQME-----KELEALKSSLTSKRSADLLEQAEEVGGVKVLVMRVEADDPKALREMNDRF 803

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++++ SG+ +L G  +  KA +L+ VT DL  R +A +L +   K + GG GGGRP MAQ
Sbjct: 804 KERLSSGVTVL-GAHQGDKAFLLVGVTPDLTSRVHAGNLIKEIVKTI-GGSGGGRPDMAQ 861

Query: 877 SGGPNGNKADQAI 889
           +GG    K   A+
Sbjct: 862 AGGNRPEKLQDAL 874


>gi|15677445|ref|NP_274601.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|20532266|sp|Q9JYG6|SYA_NEIMB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|7226845|gb|AAF41948.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58]
          Length = 874

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER+
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFRMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L   GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALVKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
           +K    +  V  ++
Sbjct: 856 DKLPAVLDSVKDWV 869


>gi|194097831|ref|YP_002000876.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|239998317|ref|ZP_04718241.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240014513|ref|ZP_04721426.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240113728|ref|ZP_04728218.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240116471|ref|ZP_04730533.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|240121035|ref|ZP_04733997.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|240125067|ref|ZP_04737953.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|254494482|ref|ZP_05107653.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268599798|ref|ZP_06133965.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268602141|ref|ZP_06136308.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268683663|ref|ZP_06150525.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|193933121|gb|ACF28945.1| AlaS [Neisseria gonorrhoeae NCCP11945]
 gi|226513522|gb|EEH62867.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268583929|gb|EEZ48605.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268586272|gb|EEZ50948.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268623947|gb|EEZ56347.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 874

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|255065962|ref|ZP_05317817.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049873|gb|EET45337.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 874

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/914 (41%), Positives = 539/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++P+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  G ++ L+G++ FKLYDT+G P D+  DI   R +  +
Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN+ +E QR+RARA           K    L      T+F GY+         +D 
Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYAGADTEFTGYEK------RSQDT 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD G 
Sbjct: 466 KII-----------------ALYKASEAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGF 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D QK    +      V  G L+   ++   ID   R  +  NHS THL+
Sbjct: 509 IFAGENCFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV    
Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVET 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+SE
Sbjct: 629 MSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AGIRR+EAITG  A +    Q+  +K++ + +K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  N +DL   K+           E D+  L+ ++  L  K  +
Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855

Query: 883 NKADQAIAGVASFL 896
            K  + +  V  ++
Sbjct: 856 AKLPEMLGSVEGWV 869


>gi|268594178|ref|ZP_06128345.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547567|gb|EEZ42985.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 881

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 10  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 70  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 863 DKLPEMLASAEGWL 876


>gi|268685404|ref|ZP_06152266.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268625688|gb|EEZ58088.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 874

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|240127048|ref|ZP_04739709.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 881

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 10  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 70  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 426 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGYS----------ER 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V   I
Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 862

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 863 DKLPEMLASAEGWL 876


>gi|317163606|gb|ADV07147.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 885

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 14  TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 74  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 194 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 372

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 430 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGYS----------ER 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 473 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 520 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 640 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 809 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 867 DKLPEMLASAEGWL 880


>gi|281412824|ref|YP_003346903.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373927|gb|ADA67489.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 863

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/905 (41%), Positives = 549/905 (60%), Gaps = 64/905 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V T QK
Sbjct: 9   IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + + +L+
Sbjct: 68  CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180
           ++VY+EDEEAF++W +  GL   KI+R+   DNFW  A  TGPCGP +EIF+D G     
Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               EC P    G      R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   +
Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   +N+D DLF+ +I   E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+N
Sbjct: 238 MQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E
Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + RF KTL++G+ + D ++   GK   ++ + AF+LYDT+GLPL++  +I   +G+  +D
Sbjct: 358 ENRFLKTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  FN+ +EEQ+ ++RA ++G         +     K   T+F GY+     K   E   
Sbjct: 414 VQEFNKYMEEQQRKSRA-AMGDVEFARRYEYLEKLPKDFRTEFTGYE-----KLEDEGEV 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           VL                  I +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG  
Sbjct: 468 VL------------------IARDDETVEEASEGT-VEVVFSRTPFYAEKGGQVSDTGMV 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +  +  V + +EG+ VH   +  G LR    +VL +D + R     NH+ATHLLH
Sbjct: 509 EWRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLH 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + PD LRFD TH K ++S+E++ +ED VN+ I + +PV  R  
Sbjct: 569 AALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSSEIEQVEDLVNEWIMEAIPVEVRYT 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A+ SG  AL   KY D VRVV V        S  LCGGTHV +TG+I L  I+SE 
Sbjct: 629 SYEEAVKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIISEE 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   
Sbjct: 684 SVSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKL 743

Query: 775 AKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK- 832
           ++ ++   +  ++  ++ D V     +   V++K L  + D + KK   GI++L   SK 
Sbjct: 744 SQGRISEKM--ITMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVIL--FSKF 799

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           E K  +++ V+E+LLDR++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +
Sbjct: 800 ENKVFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERL 858

Query: 893 ASFLK 897
             FL+
Sbjct: 859 EEFLR 863


>gi|240117118|ref|ZP_04731180.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268602805|ref|ZP_06136972.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268586936|gb|EEZ51612.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 874

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|240016958|ref|ZP_04723498.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 874

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +   
Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +E QR+RARA         + K    L      T+F GY           +R
Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +               S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD G 
Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R ++ D QK    +F    +   G L+   S+   +D + R     NHSATHL+
Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V   I
Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE
Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771
             I AG+RRIEAITG  A      Q+  +K + +  K  ++ +V+ +++      + L+ 
Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743

Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     +HA  KL  + +DL   K+           E D+  L+  +  L  K  +
Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L  ++ E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + 
Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 855

Query: 883 NKADQAIAGVASFL 896
           +K  + +A    +L
Sbjct: 856 DKLPEMLASAEGWL 869


>gi|148270517|ref|YP_001244977.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|205830276|sp|A5IMH8|SYA_THEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147736061|gb|ABQ47401.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 863

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/910 (41%), Positives = 556/910 (61%), Gaps = 74/910 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V T QK
Sbjct: 9   IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + + +L+
Sbjct: 68  CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180
           ++VY+EDEEAF++W +  GL   KI+R+   DNFW  A  TGPCGP +EIF+D G     
Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               EC P    G      R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   +
Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   +N+D DLF+ +I   E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+N
Sbjct: 238 MQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHMRAITFLISEGVFPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E
Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVAEKMGKVYPEIVRGESMVKEVLSAE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + RF KTL++G+ + D ++   G+   ++ + AFKLYDT+GLPL++  +I   +G+  +D
Sbjct: 358 ESRFLKTLEQGMKVFDEIVEKKGR---IDSEDAFKLYDTYGLPLELTLEIAREKGVE-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE--KYGATQFIGYDLLRGSKFMKED 472
           +  FN+ +EEQ+ ++R   + LG     + +  L+E  K   T+F GY+     K   E 
Sbjct: 414 VKEFNKYMEEQQRKSR---VALGDVEFARRYEYLEELPKDFRTEFTGYE-----KLEDEG 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             VL                  I +  + VE+A     VEVVF +TPFYAE GGQ+ DTG
Sbjct: 466 EVVL------------------IAKNEKAVEDATE-DAVEVVFSKTPFYAEKGGQVSDTG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +  +  +  V + +EG+ VH   V  G LR    +VL +D + R     NH+ATHL
Sbjct: 507 TVEWEDGKALVEYVFEASEGVIVHRIKVLAGTLRRGQKVVLRVDKKRREATMRNHTATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS + PD LRFD TH K ++ AE++ +E+ VN+ I + +PV  R
Sbjct: 567 LHAALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSMAEIEQVENLVNEWIMEAIPVEVR 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + E+A+ SG  AL   KY D VRVV V        S  LCGGTHVS+TG+I L  I+S
Sbjct: 627 YTSYEEAVKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVSNTGQIGLFKIIS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E S+ +G+RRIEA+TG      L  Q + +  L   L   +  +  RV  + E+ ++L+ 
Sbjct: 682 EESVSSGVRRIEAVTGFSTLELLRNQKKLIDQLKEILGAREDELTDRVLGLREKVKELE- 740

Query: 773 IHAKRKL---QLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               +KL   +++ E ++  ++ D       +  +V++K L  + D + KK + GI++L 
Sbjct: 741 ----KKLSQGRISEEKIAMKQLEDGARVFYAVFEDVEAKHLGGIADNVLKKEREGIVIL- 795

Query: 829 GISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            +SK E K S+++ V+E+LLD+++A  +AR  AK L GG GGGR + AQ+GG +  K   
Sbjct: 796 -LSKFEDKVSLVVKVSENLLDKYDASSIARNIAKEL-GGSGGGRRNFAQAGGRHPEKIRG 853

Query: 888 AIAGVASFLK 897
            +  +  FL+
Sbjct: 854 VLERLEEFLR 863


>gi|269959066|ref|YP_003328855.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848897|gb|ACZ49541.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 882

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/769 (46%), Positives = 467/769 (60%), Gaps = 48/769 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS + +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G     +N + HRVI DH+R+++FLI++G+LP NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---DNSIAHRVIADHIRAAAFLISEGLLPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL   +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLAKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + EQ+ R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFNKGMGEQKERSRRHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
            C            + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   
Sbjct: 467 CCS---------TKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 G-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G        G  +      +KA  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 518 GVSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY++  VRVVS+        S  LCGGTHV  TG+I  
Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V
Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 740


>gi|222474888|ref|YP_002563303.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida]
 gi|255002859|ref|ZP_05277823.1| alanyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|222419024|gb|ACM49047.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida]
          Length = 882

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/769 (46%), Positives = 468/769 (60%), Gaps = 48/769 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS + +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G     NN + HRVI DH+R+++FLI++G+ P NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ + EQ+ R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFDKGMGEQKERSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
            C            + V +I + G  V+   SG++  ++ D +PFYAE+GGQ GD G   
Sbjct: 467 CCS---------TKASVLSITRDGMAVQSVNSGERACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 G-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G        G+ +      +KA  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 518 GVSGVNNSGGVNIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKP 637

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY++  VRVVS+        S  LCGGTHV  TG+I  
Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V
Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 740


>gi|15644148|ref|NP_229197.1| alanyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|6707752|sp|Q9X1B6|SYA_THEMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4981959|gb|AAD36467.1|AE001792_7 alanyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 863

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/903 (41%), Positives = 555/903 (61%), Gaps = 60/903 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V T QK
Sbjct: 9   IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + + +L+
Sbjct: 68  CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---C 182
           ++VY+EDEEAF++W +  GL   +I+R+   DNFW  A  TGPCGP +EIF+D G    C
Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKRILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183

Query: 183 IPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G G   ++ EG R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++Q   
Sbjct: 184 PEGEGCTPANSEG-RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMMQGVY 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +N+D DLF+ +I+  E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+NEGRGY
Sbjct: 243 SNFDTDLFQPIIKRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+ RF 
Sbjct: 303 VLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEENRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL++G+ + D ++   GK   ++ + AF+LYDT+GLPL++  +I   +G+  +D+  FN
Sbjct: 363 KTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VDVQEFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +EEQ+ ++RA ++G         +     K   T+F GY+     K   E   VL   
Sbjct: 419 KYMEEQQRKSRA-AMGDVEFARRYEYLEKLPKDFRTEFTGYE-----KLEDEGEVVL--- 469

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          + +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG       
Sbjct: 470 ---------------VARDDETVEEASEGT-VEVVFSRTPFYAEKGGQVSDTGMVEWRDG 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  +  V + +EG+ VH   +  G LR    ++L +D + R     NH+ATHLLH AL  
Sbjct: 514 KALVEYVFEASEGVIVHRIKILDGTLRRGQKVILRVDKKRREATMRNHTATHLLHAALKK 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV  R  + E+A
Sbjct: 574 VLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTSYEEA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + SG  AL   KY D VRVV V        S  LCGGTHV +TG+I L  I+SE S+ +G
Sbjct: 634 VKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIISEESVSSG 688

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+     +KL
Sbjct: 689 VRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELE-----KKL 743

Query: 780 ---QLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-EK 834
              +++ E ++  ++ D V     +   V++K L  + D + KK   GI++L   SK E 
Sbjct: 744 SQGRISEERIAMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVIL--FSKFEN 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+++ V+E+LL +++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +  
Sbjct: 802 KVSLVVKVSENLLGKYDASSIARNIAKEL-GGNGGGRKNFAQAGGRHPERIKDVLERLEE 860

Query: 895 FLK 897
           FL+
Sbjct: 861 FLR 863


>gi|83590480|ref|YP_430489.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|123524268|sp|Q2RHZ3|SYA_MOOTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83573394|gb|ABC19946.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 881

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/898 (41%), Positives = 540/898 (60%), Gaps = 43/898 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF   GH ++ SSSL+P NDPTL+FTN+GMV FK+++ G ++  +   TT 
Sbjct: 4   NELRERFLKFFASKGHTIVHSSSLVPANDPTLLFTNAGMVQFKDVYLGLDRRPFTRATTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+  +L   R
Sbjct: 64  QKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWEFLTRVLELPPER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           L++TVY ED+EA++LW++I+G+ A++I+R+   DNFW+M +TGPCGPCSEI +D+G    
Sbjct: 124 LWVTVYQEDDEAYQLWQEIAGIPAERIVRMGEKDNFWAMGDTGPCGPCSEIIYDRGPEHA 183

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           C        + + +R++EIWNLVFMQ+E+ +      LP+ SIDTGMGLER+A+VLQ   
Sbjct: 184 CSSTPCALGACDCDRWLEIWNLVFMQYERDSNGNLSPLPRPSIDTGMGLERVASVLQGVD 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           +N+D DL   LI+A E++TG  Y+ G      RVI DH RS +FLIADGILP NEGR YV
Sbjct: 244 SNFDTDLIAPLIKAVEKITGRTYDPGEAGFPFRVIADHARSCTFLIADGILPGNEGRSYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + + LG  EP +  L+  +   MG AYPE+ + +  I   +  E+ RF +
Sbjct: 304 LRRILRRAARFGKALGIDEPFLYRLVDTVVAIMGGAYPEVAEQQEHIARVIEQEEIRFHE 363

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL+ GL +L+G+L    ++  E+++G  AF LYDT+G PLD+ ++I    G   +D   F
Sbjct: 364 TLNDGLKVLNGILERARQEGREVVSGLEAFTLYDTYGFPLDLTEEIAGEGGFK-VDRDGF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A+  QR RARA    + +      +    E    T F GYD L       ED+     
Sbjct: 423 EKAMAAQRERARAAREDVKAYDFALAFAGALEDISGTAFTGYDQL-------EDK----- 470

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V A+ Q+G  V    +     VV D+TP Y E GGQ+GD G     G
Sbjct: 471 -----------GTVLALFQEGARVTSLEANATGYVVLDRTPCYPEGGGQVGDRGELKWSG 519

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++ D ++  +G  VH   V  G L     + + +D + R+  + NH+ THLLH AL 
Sbjct: 520 GQARVEDTRRLPDGKIVHQINVTAGTLVVGQEVEIAVDRERRQATARNHTVTHLLHRALK 579

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV+Q GS +TP+ LRFD TH  P+T  EL+++E  VN  I  NLPV T   + ++
Sbjct: 580 NILGEHVNQAGSLVTPERLRFDFTHFAPLTGEELRAVEAEVNQKILANLPVTTLETSYQE 639

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY +RVRVV ++      +S  LCGGTH+ ST E     +VSES I A
Sbjct: 640 AKAMGATALFGEKYGERVRVVKID-----AYSMELCGGTHLGSTSEAGSFRLVSESGIGA 694

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+EA+TG  A    +   ++L ++A  LKV     + RV  + E+ ++ +   A+ +
Sbjct: 695 GVRRVEAVTGAAALEMALQDRQELATIAGLLKVPPDQAIQRVRHLLEQNKENERELAQLR 754

Query: 779 LQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L    ++ L     ++A V  +   +   D + L+ + + L+ ++ SG+++L G    
Sbjct: 755 NELASYTIDKLLDRVQEVAGVPVLPARVQITDPEALREMAERLRSRLGSGVVIL-GSQHN 813

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + + + +V++DL+ R  +A +L R  A++   GGGGGR  MAQ+GG +  K DQA+A
Sbjct: 814 GRVNFVAMVSKDLVQRGIHAGNLLREVARI-ASGGGGGRADMAQAGGKDPGKLDQALA 870


>gi|170289222|ref|YP_001739460.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|205830279|sp|B1LBS9|SYA_THESQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170176725|gb|ACB09777.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 863

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/905 (41%), Positives = 548/905 (60%), Gaps = 64/905 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V T QK
Sbjct: 9   IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + + +L+
Sbjct: 68  CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180
           ++VY+EDEEAF++W +  GL   KI+R+   DNFW  A  TGPCGP +EIF+D G     
Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               EC P    G      R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   +
Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   +N+D DLF+ +I   E++TG+ Y+ +    V+ RVI DH+R+ +FLI++G+ P+N
Sbjct: 238 MQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E
Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + RF KTL++G+ + D ++   GK   ++ + AF+LYDT+GLPL++  +I   +G+  +D
Sbjct: 358 ENRFLKTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  FN+ +EEQ+ ++RA ++G         +     K   T+F GY+     K   E   
Sbjct: 414 VQEFNKYMEEQQRKSRA-AMGDVEFARRYEYLEKLPKDFRTEFTGYE-----KLEDEGEV 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           VL                  I +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG  
Sbjct: 468 VL------------------IARDDETVEEASEGT-VEVVFSRTPFYAEKGGQVSDTGMV 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +  +  V + +EG+ V    +  G LR    +VL +D + R     NH+ATHLLH
Sbjct: 509 EWRDGKALVEYVFEASEGVIVQRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLH 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV  R  
Sbjct: 569 AALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYT 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A+ SG  AL   KY D VRVV V        S  LCGGTHV +TG+I L  I+SE 
Sbjct: 629 SYEEAVKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIISEE 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   
Sbjct: 684 SVSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKL 743

Query: 775 AKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK- 832
           ++ ++   +  ++  ++ D V     +   V++K L  + D + KK   GI++L   SK 
Sbjct: 744 SQGRISEKM--IAMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVIL--FSKF 799

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           E K  +++ V+E+LLDR++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +
Sbjct: 800 ENKVFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERL 858

Query: 893 ASFLK 897
             FL+
Sbjct: 859 EEFLR 863


>gi|241765465|ref|ZP_04763432.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241364775|gb|EER59764.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 874

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/909 (41%), Positives = 524/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   TVADIRKTFLDFFASKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 66  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 126 DRLLATVYQEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG+    N  +  RVI DH+R+++FL++DG++P+N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAGRETGVTDLNNKSL--RVIADHIRATAFLVSDGVIPSN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP L + +  I E L++E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGKKTPFFHKLVADLVRLMGDAYPALREQEQRITEVLKAE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   R +  +D
Sbjct: 364 EERFFETLANGMEILDAALD--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERDVE-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E+Q+++ARA     G    +K   +L+    A QF GY+ L       E  K
Sbjct: 421 EAGFKTAMEKQKAQARA----AGKFKMDK---ALEYTGAANQFTGYEHL------AETAK 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           ++                 AI   G       +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 468 IV-----------------AIYVDGTSAAALKTGQNGVVVLDTTPFYAESGGQVGDEGVI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +F HH  +E G L    ++   ++   R     NHS THL+H
Sbjct: 511 TSGSARFAVGDTLKVKADVFGHHGTLEHGTLNVGDTVQAQVNTAVRAATMRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  D  RFD  H+  +T+AE++ IE  VN+ I  N P   R+M
Sbjct: 571 KALREVLGSHVQQKGSLVNADRTRFDFAHNAAVTNAEIREIERRVNEEILANQPTQARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +VSE 
Sbjct: 631 DIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVQRTGDIGLFKVVSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG  A ++L   ++ +   A  LK     + GR+ +  E  R L  ++
Sbjct: 685 GVAAGVRRIEAVTGANALAYLQQLEDTVHQAAGTLKAPVAELNGRIGQALEHARALEKEV 744

Query: 773 IHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D       ++  +  ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 745 AALKGKLASSQGDELVTQAVEVKGLKVLAAALPGADAKTLRDTMDKLKDKLKTAAIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A +L    A+ + GG GGG+P MA +GG + +K   A+
Sbjct: 805 VDGD-KVQLAAGVTSDTVGRIKAGELVNFVAQQV-GGKGGGKPDMAMAGGTDASKLPAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 ASVTGWVTQ 871


>gi|119478765|ref|ZP_01618604.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119448344|gb|EAW29599.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 874

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/879 (41%), Positives = 529/879 (60%), Gaps = 63/879 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FF++ GH  + SSSL+P NDPTL+FTN+GMV FK++F GQ+   Y   T+ 
Sbjct: 4   SEIREAFLCFFEEKGHTRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDHRSYTRATSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT     ++  
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAFAWEFLTAAEWLNIPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY +D EA+ +WK    +  ++IIRI  N       DNFWSM +TGPCGPCSEI
Sbjct: 124 DKLTVTVYADDSEAYDIWKNEMLVPEERIIRIGDNKGVKYASDNFWSMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS  E+G+R+IEIWN VFMQ+ + +      LP  S+DTGMGLER+A
Sbjct: 184 FYDHGPEIEGGPPGSPDEDGDRFIEIWNNVFMQYNRSSDGTMADLPAPSVDTGMGLERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            V+Q+  NNY+IDLF++L+ A+ +V G+    +  +  RVI DH+RS +FL+ DG+LP+N
Sbjct: 244 AVMQDVHNNYEIDLFQNLLNAAAKVLGVNDTTDTSL--RVIADHIRSCAFLVVDGVLPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   +G  E     L+  L  EMG+AYPEL + +  IE+ L +E
Sbjct: 302 EGRGYVLRRIVRRAVRHGNKMGAKEAFFYRLVAPLALEMGAAYPELPKLQSRIEKVLLTE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +++F KTLD+G+ +L+  L +L   EI  G+  FKLYDT G P+D+  DI   RGL  +D
Sbjct: 362 EQQFAKTLDQGMRILEADLDNLSGKEI-PGETIFKLYDTFGFPVDLTGDIARERGLT-LD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-----EKYGATQFIGYDLLRGSKFM 469
              F +A+  QR RAR+ S            F ++     +  G T F GYD L+     
Sbjct: 420 EPGFEKAMNAQRQRARSAS-----------HFKMELPSDIDIDGETIFSGYDSLQAE--- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                  C+             + A++  GE+V+    G++  VV   TPFY E+GGQ+G
Sbjct: 466 -------CE-------------ITALLNGGELVDRLTEGEQGVVVLASTPFYGESGGQIG 505

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G       R  +++  K A+   +HH ++ +G L     + + +D   R+  ++NHSA
Sbjct: 506 DSGFMEVGATRFDVSETTKNADN-HLHHGVILQGGLSVGDKVSVQVDENVRQATTLNHSA 564

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +    LRFD +H + +T+ +L  IE  VN  I  N  V
Sbjct: 565 THLLHAALRQVLGDHVTQKGSLVDSKKLRFDFSHFEGLTADQLAEIETIVNQHIRHNSEV 624

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T + + + A   GA  L G KY D+VRV+++  +DG   S+ LCGGTHVS TG I L+ 
Sbjct: 625 TTTVTDMDHASELGAMMLFGEKYGDQVRVLAMG-DDG--FSTELCGGTHVSRTGNIGLMR 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I +ES I AG+RRIEA TG  A +     + ++  +A+ +K S+ NV  +++++ E +++
Sbjct: 682 ITAESGIAAGVRRIEATTGATALALFSDTERRIGEIAALVKGSRENVASKIQQVLESHKQ 741

Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK---KIQSGI 824
           L  +L   K K+          +  DVN +  +  ++++ ++K++ D + K   K+ S +
Sbjct: 742 LEKELSRLKSKMASAAGSELADQAVDVNGIRVVACQLEAADMKTLDDTVSKLKDKLGSSV 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           ++L  I  + K ++   V+ DL+ +  A DL +  A ++
Sbjct: 802 VLLASIDGD-KINLACGVSSDLIKQVRAGDLMKYFAPLV 839


>gi|327398418|ref|YP_004339287.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181047|gb|AEA33228.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 860

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/900 (40%), Positives = 537/900 (59%), Gaps = 51/900 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FLE+F++NGH ++ S+ L+P NDPTL+F N+GMV FKN+F G+EK  Y   T+ 
Sbjct: 4   SDLRKAFLEYFKENGHTIVKSAPLVPKNDPTLLFVNAGMVQFKNVFLGKEKRDYARATSC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   WD +T+   +D+ +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFGWDFVTRVLGIDKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT++ +D+EAF++W K  G+ + +I+R+  +DNFW+M +TGPCGPCSEI  DQG  + 
Sbjct: 124 LWITIFKDDDEAFEIWNKQEGVPSSRIVRMDEHDNFWAMGDTGPCGPCSEIHIDQGPDVG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  S   + +RY+E+WNLVFMQ+ +        LPK SIDTGMGLER++ +LQ   +
Sbjct: 184 CGKPNCSVACDCDRYLELWNLVFMQYNRDEDGNMTPLPKPSIDTGMGLERVSAILQGVHS 243

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+DID+F+H+I    +   + Y  + N  V  RVI DHLR+  FLIADG+ P  EGRGYV
Sbjct: 244 NFDIDIFRHIIGNISEFFRIDYGKDSNRDVGVRVIADHLRAMDFLIADGVFPDKEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM + + LG  EP +   +  +   MG  YPEL+Q K ++   +++E+E+F +
Sbjct: 304 LRRIMRRAMRFGKKLGANEPFLYRFIDTVNDVMGDVYPELLQNKEMVVNVVKAEEEQFFE 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD GL +L+ +     K  +++ + AFKLYDT+G P+D+  DI    G   +D+  FN+
Sbjct: 364 TLDSGLRILNDIFDKATK-RVVDAESAFKLYDTYGFPIDLTVDIAKENGFE-VDVKDFNE 421

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLLRGSKFMKEDRKVLC 477
            LE+QR  +R    G G    E +W +  + Y   G T+F+GYD     +F  + R    
Sbjct: 422 LLEKQREASRKSWKGSGD---EFVWDAFGDIYKQKGKTEFVGYD-----EFETKAR---- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         +  IV + + ++E         +FD+TPFYAE+GGQ+ DTG  +  
Sbjct: 470 --------------LLGIVGKDKKIKEQAQRGVYYFIFDKTPFYAESGGQVADTGFILKG 515

Query: 538 GIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             R  ++DV+K  +G +FVH   V  G         L I+   R+ ++ +H+ATHLL  A
Sbjct: 516 NARAFVSDVKKYFDGNLFVHKVDVLEGEFELNDECDLRINVARRKNIARHHTATHLLDAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS +  + LRFD TH   +T  +++ IE+ +N  I +N PV T  M+ 
Sbjct: 576 LIKILGKHVRQAGSLVEDNRLRFDFTHFSKLTDEQIEEIEELINSWIVENYPVKTETMSL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DAI SGA AL   KY+D VRVVSV     G  S  LCGGTHV ++GEI L  ++ ES++
Sbjct: 636 DDAINSGAIALFDEKYSDEVRVVSV-----GNISKELCGGTHVKASGEIGLFKVIHESAV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA  G  A  ++   ++ LK  AS L +        + E+     +       
Sbjct: 691 AKGIRRIEAKVGVEAYEYVKQIEKVLKDAASKLGIP-------ITEL-PLKIEELKKKKT 742

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            K Q   +     K+  ++    +    D  EL+ + D ++ K++S I++L    K+ + 
Sbjct: 743 LKSQPKFDPSKVVKVNGIDVYVDVFENEDVSELRHLGDTVKSKLKSCIVVLFD-KKDDRV 801

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +V+++VT+DL +R  A D+    ++ L GG GGG+   AQ GG + ++ ++ I  + SFL
Sbjct: 802 NVIVMVTKDLANRIKAKDVVGKISRAL-GGKGGGKEEFAQGGGRDLDRLEEIIRSINSFL 860


>gi|299530963|ref|ZP_07044376.1| alanyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298720920|gb|EFI61864.1| alanyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 874

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/845 (42%), Positives = 504/845 (59%), Gaps = 54/845 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+F+   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+  W+LLTK F L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L  TVY ED+EA+ +WK + GL A++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS EE G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T    E  +  + +VI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRET--HTEDLSTPSLKVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I   L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQEAHITSVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+  ARA           K+  +L+    A  F GYD L       E  K
Sbjct: 422 EAGFNAAMQHQKETARA-------AGKFKMDRALEYTGDANVFTGYDKL------AEAAK 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           ++                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 IV-----------------ALYADGVSVNELQAGQNGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D   R     NHS TH++H
Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTATDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V ES
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVVGES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIE ITG+ A ++L   +  +   A+  K     +  R+    ++ + L  ++
Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPVAELTNRIGGALDQIKALEKEI 745

Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    + ADVN    ++  +   D+K L+  MD L+ K+ + +I+L  
Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805

Query: 830 ISKEK 834
           +  +K
Sbjct: 806 VDGDK 810


>gi|301064400|ref|ZP_07204825.1| alanine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300441482|gb|EFK05822.1| alanine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 880

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/905 (40%), Positives = 534/905 (59%), Gaps = 42/905 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  FL++F K+ H ++ SSSLIP +DPTL+FTN+GMV FKN F G E   Y    
Sbjct: 2   NFREIRQQFLDYFSKHDHRIVESSSLIPRDDPTLLFTNAGMVQFKNAFLG-ENVGYTRAA 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W+LLT+ + L  
Sbjct: 61  TAQKCVRAGGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKEEAIRWGWELLTEGYGLPA 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+++VY +D+EA+ +W+K  GL AD+I+R+   DNFW+M +TGPCGPCSEI  DQG  
Sbjct: 121 EKLHVSVYKDDDEAYDIWQKEIGLPADRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGPS 180

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G P      + +RY+EIWNLVF QF++    +   LPK +IDTGMGLER+A V+Q  
Sbjct: 181 VGCGRPECACGCDCDRYLEIWNLVFTQFDRSPDGKLTPLPKPNIDTGMGLERLAAVIQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NYD DLF+ +I   E ++  KY  N    V  RVI DH R+ SFLI DGI+P+NEGRG
Sbjct: 241 KSNYDTDLFRDIITRIESLSQKKYGSNERMDVAFRVISDHARAVSFLIGDGIMPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + + LG  +  +  +   +   MG  Y EL++A+  I   + +E+ RF
Sbjct: 301 YVLRRIIRRASRFGQALGLEDIFLRSICDHVIELMGRDYGELVRARSFILGVVENEERRF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TL   + +L   +  L + E   + G+V FKLYDT+GL +D+++D+     L G+D+ 
Sbjct: 361 ADTLRYSMKVLREEIEQLREKEKAAIPGEVVFKLYDTYGLAVDLVEDVARDENL-GVDLE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            +  A+  QRS ++    G G     K +  L  +   ++F GYD L             
Sbjct: 420 GYKDAMNRQRSLSQESWKGSGEAAVPKTFRDLLNRNLTSRFTGYDTLEAE---------- 469

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       S I+  ++   E V     G K +++ DQT FYAE+GGQ+GDTG  + 
Sbjct: 470 ------------SRILSLVLGDLE-VNTIYKGDKAQMILDQTAFYAESGGQVGDTGLIMN 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ +  K  + + VH   +E G L    S+  ++D  +R  ++ +HSATHLLH A
Sbjct: 517 GIAHFRVENTFKYGQDLIVHEGFLEEGELSVGDSVQASVDTAHRMAVAASHSATHLLHAA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS + P  LRFD +H   +++  L  +E  VND I +NLP+ TRIM++
Sbjct: 577 LREILGDHVKQAGSRVAPGRLRFDFSHFTQVSTENLIEVERWVNDRIRENLPLDTRIMDK 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A+ +GA A+   KY D+VR+V +    G   S  LCGGTH   TG+I +  I+SE ++
Sbjct: 637 EAAMKTGAMAIFEEKYGDKVRIVDI----GEGVSRELCGGTHTRRTGDIGVFRILSEGAV 692

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            A +RRIEA+TG  A  +   +DE+LK+ A  LKV+   ++ +++ + EE R+ +     
Sbjct: 693 AANVRRIEALTGASALLYDQERDERLKNAAGLLKVAPDQLIEKLKRLLEEAREKEREIES 752

Query: 777 RKLQLNVEDLS--CHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  E  +     + ++  +S +  E+++   KEL+   D ++ ++ SGI++L G  
Sbjct: 753 LKGRLFTEKSADLMQDVREITGISVVAKELEAETPKELREAADRIKDRLGSGIVLL-GAK 811

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              K  ++  VT+DL +RFNA  + R     + GG GGGRP MAQ GG    K  +A   
Sbjct: 812 NGGKVMLICAVTKDLTNRFNAGQIIR-ELSGIVGGKGGGRPDMAQGGGDRPEKLTEAFNS 870

Query: 892 VASFL 896
           + + +
Sbjct: 871 LETLI 875


>gi|126641224|ref|YP_001084208.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 837

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/876 (43%), Positives = 508/876 (57%), Gaps = 60/876 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK+ F G EK  Y   TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDCFLGLEKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  A++ AW+ LT E    L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N   
Sbjct: 61  KRDALKFAWEFLTSEQWLALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGE 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212
               DNFW+M +TGPCGPCSEIFFD GE I GGLPGS EE G+R+IEIWN VFMQF +  
Sbjct: 121 KYASDNFWAMGDTGPCGPCSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LP  S+DTGMGLER++ VLQ   +NYDIDLF+HL++A+  + G++ EG   +  
Sbjct: 181 DGVLHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL-- 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH RS  FLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   
Sbjct: 239 RVVADHARSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG AYPEL   + +IE TL  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYD
Sbjct: 299 MGQAYPELEARREVIEATLIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P D+  DI   RG   ID   F   +  QR RAR       +G     + ++ +  
Sbjct: 358 TYGFPTDLTADIARERGFI-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVE 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           G TQF GY                        T G   IV AI + G  V+E   G +  
Sbjct: 411 GETQFDGYTN----------------------TTGQGQIV-AIYKDGVQVDEVSEGDEAL 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V +QTPFYAE+GGQ+GDTG    +    ++ D  KK+ G FVH  IV  G L+T  ++ 
Sbjct: 448 IVLNQTPFYAESGGQIGDTGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVE 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +    R   + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L
Sbjct: 507 AIVKADIREATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQL 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSS 691
           + +E  VN  I  N  V T +++ E A A GA  L G KY D VRV+S+    D    S 
Sbjct: 567 QQVERLVNAEIIANTAVTTELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSI 626

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGG HV  TG+I L  I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK 
Sbjct: 627 ELCGGIHVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKA 686

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-------VEDL--SCHKIADVNFMSHIIS 802
            +   V RV+   E    LQ    K+  QLN         DL      IA    +   + 
Sbjct: 687 QKDQTVERVQANVELVSALQ----KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQ 742

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            VD+K L+++ D+++ K+++ +I+L G+  + K S+L  V         A D+ +  A  
Sbjct: 743 GVDAKALRNLHDSVKSKLENAVIVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATE 801

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           L GG GGG+P +AQ G P   K  Q +A + ++L++
Sbjct: 802 L-GGKGGGKPDLAQGGAPLNEKFGQVMAALPAWLEQ 836


>gi|260361824|ref|ZP_05774840.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|308114481|gb|EFO52021.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 788

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/750 (46%), Positives = 465/750 (62%), Gaps = 48/750 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   T
Sbjct: 4   STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L  
Sbjct: 64  TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174
            RL +TVY+ D+EAF +W K  G+ AD+IIRI          +DNFW M +TGPCGPC+E
Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P+
Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A I
Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR  +   G+     I    +     T+F GY   +G        
Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGQFGTDYNAAIKVDTQ-----TEFCGYVGTKG-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          SS V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G 
Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHLL
Sbjct: 511 IRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T +
Sbjct: 570 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETNV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I SE
Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           S I AGIRRIEA+TG+ A   +  Q  K +
Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQAAKYE 714


>gi|152979781|ref|YP_001352273.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|205830071|sp|A6SVH6|SYA_JANMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151279858|gb|ABR88268.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 869

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/907 (41%), Positives = 535/907 (58%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S IR  FL+FF+  GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K  Y   T
Sbjct: 2   NSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYTRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A++ +W+LLT+ + L  
Sbjct: 62  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALKWSWELLTQVYGLPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L  TVY ED+EAF +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 122 EKLLATVYIEDDEAFDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+A
Sbjct: 182 FYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVKPLPAPCVDTGMGLERLA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID F+ LI+A+ + T  K   NN +  +VI DH+R+++FL+ADG++P+N
Sbjct: 242 AILQHVHSNYEIDTFEALIKAAGRETNTKDLSNNSL--KVIADHIRATAFLVADGVIPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG  +P    L+  L  +MG AYP+L      I + L++E
Sbjct: 300 EGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLKADAQRITDVLKAE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT G PLD+  D+   RGL+ +D
Sbjct: 360 EERFFETLANGMEILDAALA--GDAKVLPGEVAFKLHDTFGFPLDLSADVCRERGLS-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E+Q++  RA     G    E+   +++       F GY+ L           
Sbjct: 417 EAGFAAAMEKQKAAGRA----AGKFKMER---AVEYTGAGNTFTGYEHLE---------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V  +  +G  V     GQ   VV D TPFY+E+GGQ+GD G  
Sbjct: 460 -------------EQATVVGLYFEGTAVPSLKEGQAGIVVLDTTPFYSESGGQVGDQGFI 506

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G++  + D QK    ++ HH +  +G L     +   +D   R     NHS TH++H
Sbjct: 507 SAEGVQFGVEDTQKIKADVYGHHGVQTQGTLTVGDKVKAAVDGARRAATMRNHSVTHIMH 566

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + PD  RFD  H+ P+T  ++  IE  VN  I  N     R+M
Sbjct: 567 KALREVLGDHVQQKGSLVDPDKTRFDFAHNAPVTREQILEIEKRVNAEILLNSDTQARVM 626

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  ++SES
Sbjct: 627 DIESAQKTGALMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVMSES 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEAITG +A  ++   +  + S A+ +K     +  R+ ++ ++ + L  ++
Sbjct: 681 GVAAGVRRIEAITGAKALGYVQDLEAVIHSAAAMMKTQPAELEPRLAQVLDQMKALEREV 740

Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  DV     ++ ++   D   L++ MD L+ K+++  I+L  
Sbjct: 741 GALKGKLASSQGDELLAQAVDVKGIKVLAAVLEGADVATLRNTMDKLKDKLKTAAIVLAA 800

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ + K S++  VT D + +  A DL    A+ + GG GGG+P MAQ+GG + +    A+
Sbjct: 801 VN-DGKVSLIAGVTADSIAKVKAGDLVNFVAQQV-GGKGGGKPDMAQAGGTDASGLPTAL 858

Query: 890 AGVASFL 896
            GVA+++
Sbjct: 859 QGVAAWV 865


>gi|297539363|ref|YP_003675132.1| alanyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258710|gb|ADI30555.1| alanyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 901

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/925 (40%), Positives = 543/925 (58%), Gaps = 72/925 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   T+ 
Sbjct: 12  NEIRKAFLDFFASKGHQIVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRTYTRATSS 71

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L + +
Sbjct: 72  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKDDAIAYAWELLTEVFKLPKDK 131

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L +TVY +D+EA+ +W    G+ A++IIRI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 132 LTVTVYADDDEAYNIWHDKIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 191

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+   GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER++ V
Sbjct: 192 DHGDHHFGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGMMHPLPKPSVDTGMGLERISAV 251

Query: 237 LQEKTNNYDIDLFKHLIQASEQ---------------VTGMKYEGNNIVNH---RVIVDH 278
           LQ    NY+ID+FK LI A+ +               ++ +K +   I+N+   +V+ DH
Sbjct: 252 LQHVHANYEIDIFKTLIDAAAREVFVTPSNQTYSVASLSELKSKYPEILNNPSLKVLADH 311

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R+ SFLIADG++P NEGRGYVLRRI+RRA+ +   LG        L+P L  +MG AYP
Sbjct: 312 IRACSFLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGTRAAFFYKLVPDLVKQMGEAYP 371

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL+  +  I + L+ E++RF +T++ G+ +L+  L+ + K  + + NGD+AFKL+DT G 
Sbjct: 372 ELVANQSRIMDMLKLEEDRFFETIENGMEILETELATMSKANNTLFNGDLAFKLHDTFGF 431

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+  DI C      +D  +F+ A+  Q+ +ARA           K+  +L+     T 
Sbjct: 432 PLDLTADI-CRERDVNVDSAAFDAAMTRQKEQARA-------AGKFKMATNLEYNGANTD 483

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GY+ L  S       K+L                 A+ + G  V +   G++  VV D
Sbjct: 484 FKGYETLEASA------KIL-----------------ALYKDGTAVNQLSEGEQGVVVLD 520

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFYAE+GGQ+GD G    +     + D QK    +F HH I++ G +    SL  ++D
Sbjct: 521 NTPFYAESGGQVGDNGVLKAENGIFAVEDTQKIQAAVFGHHGILKTGKISVGESLKASVD 580

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NHSATHL+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E+  +E
Sbjct: 581 IAARANIMRNHSATHLMHKALRQVLGTHVQQKGSLVDADKTRFDFLHNAPMTDEEIAKVE 640

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN  I  N P   R M+ E A  +GA  L G KY D VRV+ +        ++ LCGG
Sbjct: 641 AIVNAEILANAPTQAREMDIESAQKTGAMMLFGEKYGDIVRVLDIG------STTELCGG 694

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+ TG+I L  + +ES + AG+RRIEA TG  A   +  Q   +  L++ LK     +
Sbjct: 695 THVNRTGDIGLFKVYAESGVAAGVRRIEAATGNGALKLINAQQALISQLSADLKAPTSEL 754

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKS 811
             +V ++ +  + L+   A+ K +L     +DL+    +IA V  ++  +   D+  L+ 
Sbjct: 755 ASKVAQLSDHAKSLEKELARLKSKLASSQGDDLATQATEIAGVKVLAVTLEGADANTLRE 814

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            MD L+ K++S  I+L  ++ + K S+   VT DL  +  A +L    A+ + GG GGG+
Sbjct: 815 TMDKLKDKLKSAAIVLASVN-DGKVSLAAGVTSDLTGKIKAGELVNFVAQQV-GGKGGGK 872

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG + ++  +A+AGV+ ++
Sbjct: 873 PDMAMAGGTDASQLPKALAGVSDWV 897


>gi|254796550|ref|YP_003081386.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589786|gb|ACT69148.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 848

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/769 (45%), Positives = 476/769 (61%), Gaps = 48/769 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  F++FF KNGH  LPS+SL+P +DP+LMF N+GMVPFK  F   +K  + ++ T
Sbjct: 2   IDGLRKKFIDFFVKNGHTHLPSASLVPKDDPSLMFVNAGMVPFKEYFADVKKAPFSSIVT 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L + 
Sbjct: 62  AQKCVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELKLSKE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LYITVY ED+EAF++W K++G    KI RI+T+DNFW M + GPCGPCSEIF+D GE +
Sbjct: 122 KLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHL 181

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G +P  +++ GER +EIWNLVFMQ+ ++   E   +    IDTGMGLER+A +L+   +
Sbjct: 182 SGDIPEDNKDPGERCVEIWNLVFMQYIRKQSGELARMECPCIDTGMGLERVAAILEGTDD 241

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NY   LF+ +++ S++VTG K   +N   H+VI DHLRS+SFLIADG+LP N GR YVLR
Sbjct: 242 NYKTKLFEAIVKESQKVTGNK---DNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ Y+ +LG+   L+  L   L   MGS Y EL +AK LI +TL  E+E F  TL
Sbjct: 299 RIIRRAVRYSHVLGFDTVLLPKLFWVLEECMGSYYQELTRAKNLILDTLTLEEESFRNTL 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
             G+ LL+ V S +   + L+GD+AF LYDTHG PLDI  D+L  + ++ +D   F + +
Sbjct: 359 KSGMKLLEEVSSSMKGGDTLSGDIAFTLYDTHGFPLDITIDVLKEKKIS-VDEERFAERM 417

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           + QR  A+A  +   + T+     ++  ++G T FIGY+   G                 
Sbjct: 418 KMQRLLAQASRMNDTAQTSSYEVKAVFLEHGKTPFIGYENFTG----------------- 460

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  +++ AI        E     ++ ++ DQT FY E+GGQ  D G   G+   L+
Sbjct: 461 ------LALILAIT-------EKEGSNELTIILDQTIFYPESGGQESDQGIIEGENTTLK 507

Query: 543 ITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +  V K  EG+ +H   + +G  I R E  + L ID   R  L+ NHSATH+LHH L   
Sbjct: 508 VEKVYKSTEGVILHECKIIKGQAISRGE-KVNLKIDINRRNSLARNHSATHVLHHVLRKR 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HVSQ GS +TP+ LRFD +HS+PIT  EL  IED +N +I  + PV+T +   +DAI
Sbjct: 567 LGTHVSQRGSLVTPNRLRFDFSHSQPITEEELSKIEDCINLMIWDDHPVITEVKKTDDAI 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA  L G KY+D VRVVS+        +  LCGGTHV  +  I L+ I+S SS+  G+
Sbjct: 627 RDGAIGLFGEKYDDTVRVVSIG------EAVELCGGTHVKKSSSIGLVKILSASSVAHGV 680

Query: 721 RRIEAITG----QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
           RRIEA+T     Q  R  +  Q  +L    S LK  Q +    +  +++
Sbjct: 681 RRIEAVTHLTALQYMREEIQAQLYQLNEHQSKLKTMQKSHQKEITSVYQ 729


>gi|302342573|ref|YP_003807102.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301639186|gb|ADK84508.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 884

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/907 (41%), Positives = 543/907 (59%), Gaps = 45/907 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL +F   GH+++ SS L P +DP+L+FTN+GMV FK +F GQE+  Y    T 
Sbjct: 6   NELRGKFLAYFASKGHQVVASSPLAPKDDPSLLFTNAGMVQFKQVFLGQEQRPYTRAATS 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC RA GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ A+  AW+LLT  F LD  +
Sbjct: 66  QKCFRASGKHNDLENVGRTPRHHTFFEMLGNFSFGDYFKQDAVTFAWELLTVGFGLDPEK 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V+  D+EA +LW+   G+  ++I+R+   DNFWSM +TGPCGPCSEI  D G  + 
Sbjct: 126 LWVSVHHSDDEAAELWQSEVGVRPERIVRLGDKDNFWSMGDTGPCGPCSEIHIDMGPEMG 185

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   +  RY+E+WNLVFMQ+ +    +   LPK SIDTGMGLER+A V+Q   +
Sbjct: 186 CGRPDCAVGCDCNRYLELWNLVFMQYNRDASGQTTPLPKPSIDTGMGLERIAGVVQGVRS 245

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DLF  +I+ + Q+T   Y  ++   ++ RVI DH R+ +FL+ADGILP+NEGRGYV
Sbjct: 246 NYDSDLFTPIIERACQITQTAYGQSDQADISLRVIADHARACAFLVADGILPSNEGRGYV 305

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + R LG  +P +  +   +  EM  AYP L  A+  +++ + SE+ERF +
Sbjct: 306 LRRILRRAARHGRKLGAQKPFLHQVAMKVIDEMMGAYPALGDARAFVDKVVTSEEERFNE 365

Query: 361 TLDRGLVLL-DGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD GL LL + +     K +  L G+VAFKLYDT+G P+D+ + I C     G+D   F
Sbjct: 366 TLDTGLKLLAEAIEEAKAKGQTALPGEVAFKLYDTYGFPVDLTRTI-CEEEALGVDEPGF 424

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+ +Q++R+RA   G G          L+ K   T F GYD L G             
Sbjct: 425 EAAMGQQKTRSRASWKGSGEEGLSGPLAELRAKGFKTAFTGYDGLEG------------- 471

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V A++  G++VE   +GQK  +V DQTPFY E+GGQ GD+G A G  
Sbjct: 472 ----------QGQVVALIVDGQMVERVGAGQKALLVCDQTPFYGESGGQAGDSGRAEGPA 521

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  ++   K    +  H   V  G L     L LT+D+  R + + NH+ATHLLH AL 
Sbjct: 522 GKAVVSTASKPGGDMVAHEITVSEGYLAVGERLNLTVDHGPRGETASNHTATHLLHAALR 581

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS ++P  LRFD +H + +T  ++  +E  VN+ +  N+ V    M  E+
Sbjct: 582 QVLGDHVKQAGSMVSPQRLRFDFSHFEAMTPQQMGQVEAMVNEGVLANIAVTVTEMPAEE 641

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ SGA AL G KY D VRVV +     G+ S  LCGGTHV  TG+I L  +V+ESS+ A
Sbjct: 642 ALGSGAMALFGEKYGDTVRVVEIP----GL-SKELCGGTHVKRTGDIGLFKLVAESSVAA 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIH 774
           G+RR+EA+TG+ A + +   +++L   A  LK     +  RV ++     E  R+++ + 
Sbjct: 697 GVRRVEALTGRAALAAVRAMEDELHKAAGLLKARPTELAERVAKLMATLKEREREVEQLK 756

Query: 775 AKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGIS 831
           AK        DL    +   D   +   + EVDS K L+++ D + +++ SG+++L G +
Sbjct: 757 AKLAGGGGGRDLLAGVVNHGDARVLVQKV-EVDSAKALRALSDEIIERLGSGVLVL-GAA 814

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E KA +L  V++DL  RF+A ++ +  A ++ GGGGGGRP MAQ+GG N +  DQA+  
Sbjct: 815 AEGKAFLLARVSKDLQGRFHAGNIVKELAPLV-GGGGGGRPDMAQAGGQNPDALDQAMER 873

Query: 892 VASFLKK 898
            ++ L +
Sbjct: 874 ASAMLAE 880


>gi|319941405|ref|ZP_08015733.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319805025|gb|EFW01855.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 875

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/915 (40%), Positives = 537/915 (58%), Gaps = 64/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+F++  GH ++ SS ++P NDPTL+FTN+GM  FK+++ G +   Y+  T
Sbjct: 2   KVADIRRTFLKFYESKGHTIVASSPVVPGNDPTLLFTNAGMNQFKDVYLGFDHRPYKRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L  
Sbjct: 62  TSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIHFAWELLTEHFHLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSEI
Sbjct: 122 EKLWVTVYAEDQEAYDIWHKEVGIPADRIVRIGDNKGARYMSDNFWMMGDTGPCGPCSEI 181

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RY+EIWNLVFMQF +  K E   LP+ SIDTGMGLER+A
Sbjct: 182 FYDHGPSVQGGPPGSPEEDGDRYMEIWNLVFMQFYRDEKGEMHKLPRPSIDTGMGLERIA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQAS----EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           TVLQ   +NYDIDLFK+L+ A+    E V+ +  + N+  + +VI DH+R+ +F +ADG+
Sbjct: 242 TVLQGVHSNYDIDLFKNLLAAAKAAVESVSTVPADINS-PSLKVIADHIRACAFCVADGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGR YVLRRI RRA+ +   LG   P    L+ A+  EMG AYPEL+  +  IE+ 
Sbjct: 301 VPGNEGRAYVLRRICRRALRHGYKLGARGPFFYKLVDAVRKEMGEAYPELMNHE--IEKV 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + +E+ RF +TL +G+ +LD  ++   K  +L GDV FKL+DT+G P D+  D+   RG 
Sbjct: 359 IEAEERRFLQTLSKGMDILDAAIAE-NKTGVLPGDVVFKLHDTYGFPADLTADVCRERG- 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
                IS N A  E  +          +    K+   L      T F GY+ L      +
Sbjct: 417 -----ISVNTA--EFDAAMERQRAAARASAKFKMAQGLDYTGADTVFTGYETL-----TE 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +D +V+                 A+   GE V+   +G +  VVF++TPFYAE+GGQ+GD
Sbjct: 465 KDAEVV-----------------ALYANGEPVDRVEAGSECVVVFNRTPFYAESGGQVGD 507

Query: 531 TGCAIGDGIRLQITD---VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G A      L++ D   V+    G+  H   V  G +       L +D   R   + NH
Sbjct: 508 QGEAKNATAILKVLDTFRVKAAVTGLQCH---VAEGHVAVGDKFDLAVDEARREATARNH 564

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THL+H AL T+LG  V+Q GS +TP+  RFD ++ KP+T+ ++  +E  VN  I +N 
Sbjct: 565 SVTHLMHFALRTVLGDKVAQKGSLVTPESTRFDFSYGKPVTAEQIAEVERIVNAQILKNT 624

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV TR++  E+A  +GA  L G +Y + VRV+ +        S+  CGGTHV +TG+I  
Sbjct: 625 PVQTRVLPIEEAKKTGAVMLFGERYGEVVRVLDIG------KSTEFCGGTHVKATGDIGF 678

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             +VSES I AG+RRIEA+TG  A S +   +  L + A   K     V  +  +     
Sbjct: 679 FKVVSESGIAAGVRRIEAVTGMNALSWVQNTESLLAATAREFKAPVSEVPVKAADAIATI 738

Query: 768 RKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           R L+  +   K ++     D    +  DV  +  +++ +   D+K L+  MD ++ K+ S
Sbjct: 739 RTLEKGIDQLKSQMAAKAGDALIAEACDVKGVKVLLARLDGADAKALRETMDKVKDKLGS 798

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            + +L  ++ E +  +   VT+DL  R  A +LA   A +L GG GGG+P +A +GG + 
Sbjct: 799 AVAVLASVTGEDRVQLAAGVTKDLTGRVKAGELAGFVAGLL-GGKGGGKPDLAMAGGSDV 857

Query: 883 NKADQAIAGVASFLK 897
            K  +A+    ++++
Sbjct: 858 KKLPEALEAARAWIE 872


>gi|205830260|sp|A5D3F4|SYA_PELTS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 877

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/899 (40%), Positives = 551/899 (61%), Gaps = 51/899 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK  FTG  KP Y  VTT 
Sbjct: 4   NEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRVTTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R      D+++VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L   +
Sbjct: 64  QKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLPADK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+I+++ +D+EAF++W K  G+ A +I+R+  + NFW +   GPCGPCSEI+ D G    
Sbjct: 120 LWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGAERG 178

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R++EIWNLVF+QF +  +     L    IDTG GLER+A+V+Q    
Sbjct: 179 CGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQGVPT 238

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DLF+ ++  +  + G+KY  +G   V  +VI DH R+ +F +ADG LP+NEGRGYV
Sbjct: 239 NFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ + RLLG  +P +  +  A+  +MG  YPEL+  +  +   +R E+ERFG+
Sbjct: 299 IRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEERFGE 358

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL +G  +L+ +++   +    +++G+ AF+LYDT+G PL++ Q++   +GL  +D   F
Sbjct: 359 TLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDTDGF 417

Query: 419 NQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            +A+EEQR RAR+        SG  + ++  ++E+ G T F+GYD L  +          
Sbjct: 418 GRAMEEQRQRARSARQETDYISGR-DAMFKKMREEVGETVFVGYDALEAT---------- 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V  IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G    
Sbjct: 467 -------------GRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKVTA 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             + ++I +V K  E +FVH   V  GIL+   ++   +D   R     NHSATHLLH A
Sbjct: 514 ADLEVEIHEVTKPVENLFVHRGKVVAGILKEHDTVTARVDPARRAATCRNHSATHLLHKA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS + P+ LRFD TH    T  EL+ +E+ VN ++   LPV     + 
Sbjct: 574 LKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPEELQKVEELVNRMVLSALPVEAFETSL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A   GAAAL G KY +RVRVV +     G  S  LCGGTH+ +T E+ L  ++ ESS+
Sbjct: 634 AEARKMGAAALFGEKYGERVRVVKM-----GDFSLELCGGTHLRNTAEVGLFKLLGESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ A S++  ++E+L  +A  +K +    V RVE + +  R L+  +  
Sbjct: 689 GAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVKAAPHEAVRRVEGLLQTVRDLEAENEA 748

Query: 777 RKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L    V+DL     ++  V  ++   +  D   L+ ++D L+ ++ SG+I+L G +
Sbjct: 749 LQARLARYQVQDLMDRLREVKGVKVLAGQAAAPDMDSLRGMVDLLRDRVGSGVIVL-GSA 807

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E + +++  VT+DL+++  +A  L +  A V+ GGGGGGRP MAQ+GG + ++  +A+
Sbjct: 808 GENRVNLVAAVTKDLVEKGLHAGKLVKELAPVV-GGGGGGRPEMAQAGGKDPSRLKEAL 865


>gi|91788770|ref|YP_549722.1| alanyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123355561|sp|Q129G8|SYA_POLSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91697995|gb|ABE44824.1| alanyl-tRNA synthetase [Polaromonas sp. JS666]
          Length = 878

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/907 (40%), Positives = 535/907 (58%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR +FL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 11  TVADIRKSFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 70

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT  + L  
Sbjct: 71  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTDVYKLPA 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY +D+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 131 DKLWATVYIDDDEAYDIWTKEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSEI 190

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS E+ G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 191 FYDHGPEIAGGPPGSPEQDGDRYIEIWNNVFMQFDMQPDGSVKPLPAPCVDTGMGLERLA 250

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K   N  +  RVI DH+R+++FL++DG+ P+N
Sbjct: 251 AILQHVHSNYEIDVFDALIKAAARETGEKDLNNKSL--RVIADHIRATAFLVSDGVNPSN 308

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP+L   +  I   L++E
Sbjct: 309 EGRGYVQRRIIRRAIRHGYKLGKKTPFFHKLVADLARLMGDAYPKLRTDEARITAVLKAE 368

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL+ G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 369 EERFFETLEIGMTILDTALA--GGAKVLPGDVAFKLHDTYGFPLDLSADVCRERGV-DVD 425

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+++ARA           K+  +L+       F GY+ L      +E  K
Sbjct: 426 ETGFNAAMDRQKNQARA-------AGKFKMDRALEYAGSGNTFTGYERL------EETAK 472

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           ++                 A+   G  V     GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 473 IV-----------------ALYADGVPVAALTKGQSGVVVLDTTPFYAESGGQVGDEGEL 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I       + D  K    ++ HH  VE+G L     +   ++   R     NHSATHL+H
Sbjct: 516 ISGSAHFAVGDTLKIKSDVYGHHGTVEQGTLNVGDHVNARVNLAVRAATVRNHSATHLMH 575

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T  +++ IE  VN  I  N+     +M
Sbjct: 576 KALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTDDQIREIEARVNAEILSNVATDASVM 635

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY D+VRV+S+        S  LCGGTHV+ TG+I L  IV+ES
Sbjct: 636 DMEAAQKTGAMMLFGEKYGDKVRVLSIG------SSKELCGGTHVTRTGDIGLFKIVAES 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ A ++L   +  +++ A  LK S   +  R+ ++ ++ + L  ++
Sbjct: 690 GVAAGVRRVEAVTGENALAYLQSLESTVQAAAGSLKASPTELQQRIGQVLDQVKSLEKEI 749

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  DV  +  + + +   D++ L+  MD L+ K+++G+ +L  
Sbjct: 750 AALKGKLASSQGDELMAQAFDVKGLKVLAARLEGADARTLRETMDKLKDKLKTGVFVLAA 809

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  +   VT D +    A +L    A+ + GG GGG+  MA +GG + ++ D A+
Sbjct: 810 VDG-NKVQIAAGVTADSVTVVKAGELVNFVAQQV-GGKGGGKADMAMAGGTDASRLDDAL 867

Query: 890 AGVASFL 896
             V +++
Sbjct: 868 KSVRAWV 874


>gi|88608446|ref|YP_506054.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|123492337|sp|Q2GEP2|SYA_NEOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88600615|gb|ABD46083.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 848

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/728 (46%), Positives = 458/728 (62%), Gaps = 46/728 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  F++FF KNGH  LPS+SL+P +DP+LMF N+GMVPFK  F    +  + ++ T
Sbjct: 2   IDGLRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVT 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L ++
Sbjct: 62  AQKCVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LYITVY ED+EAF++W K++G    KI RI+T+DNFW M + GPCGPCSEIF+D GE +
Sbjct: 122 KLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHL 181

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQF--EQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            G +P   ++ GERY+EIWNLVFMQ+  EQ  +  R   P   IDTGMGLER+A +L+  
Sbjct: 182 SGDIPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECP--CIDTGMGLERVAAILEGT 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY   LF+ +++ S+ VTG K   +N   H+VI DHLRS+SFLIADG+LP N GR YV
Sbjct: 240 DDNYKTKLFEAIVKESQNVTGNK---DNQAAHKVIADHLRSASFLIADGVLPGNTGREYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ Y+  LG+   L+  L   L   MGS Y EL +A+ LI +TL  E++ F  
Sbjct: 297 LRRIIRRAVRYSHALGFDTVLLPKLFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRN 356

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL  G+ LL+ V S + + + L+GD+AF LYDTHG PLDI  DIL  R ++ +D   F +
Sbjct: 357 TLKSGMKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDILKERKIS-VDEEGFAE 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++ QR  A+A  +   + T+     ++  ++G T FIGY+                   
Sbjct: 416 RMKMQRLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENF----------------- 458

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                 G++ I+    ++G          K+ ++ DQT FY E+GGQ  D G   G+   
Sbjct: 459 -----TGLALILAITEKEG--------SNKLTIILDQTIFYPESGGQESDQGIIEGENTL 505

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALST 599
           L++  V K  EG+ +H   + RG + +    V L ID   R  L+ NHSATH+LHH L  
Sbjct: 506 LKVEKVYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILHHVLRK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HVSQ GS + P  LRFD +HS+ IT  EL  IED +N +I  + PV+T I   ++A
Sbjct: 566 RLGAHVSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I  GA  L G KY+D VRVVS+        +  LCGGTHV  +  I L+ I+S SS+  G
Sbjct: 626 IRDGAIGLFGEKYDDTVRVVSIG------EAVELCGGTHVKKSSAIGLVKILSASSVAHG 679

Query: 720 IRRIEAIT 727
           +RRIEA+T
Sbjct: 680 VRRIEAVT 687


>gi|15606507|ref|NP_213887.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|6226165|sp|O67323|SYA_AQUAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2983727|gb|AAC07289.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 867

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/893 (40%), Positives = 532/893 (59%), Gaps = 50/893 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T+ Q
Sbjct: 7   EIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQ 66

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L + +L
Sbjct: 67  KCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKL 126

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE   G
Sbjct: 127 YVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG 186

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                    ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +N++
Sbjct: 187 --------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFE 238

Query: 246 IDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           ID+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV+RR
Sbjct: 239 IDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF KTL 
Sbjct: 299 ILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLK 358

Query: 364 RGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
            G+  +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F   
Sbjct: 359 AGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGFQCE 417

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           LEEQR RAR H   + +   + ++  LKE    + F+GY+ +                  
Sbjct: 418 LEEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVGYEHMEWE--------------- 461

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  S +V  +  +G +V E   G++ EVV  +TPFY E GGQ+GD G    D    
Sbjct: 462 -------SQVVGLVKGEG-LVSELKEGEEGEVVLKETPFYPEGGGQIGDAGIIESDKALF 513

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++ D QK  EGI VH   V +G L+   ++   +D + R  +  NH+ATHLLH AL  +L
Sbjct: 514 KVEDTQKPTEGIIVHIGKVLKGTLKVGDTVHARVDKERRWDIMRNHTATHLLHAALRNVL 573

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS +    LRFD TH   +T  ELK +E+ VN+ I +NLPV    M  ++A+ 
Sbjct: 574 GEHVRQAGSLVADKYLRFDFTHFSALTEEELKRVEELVNEKIRENLPVNVMEMAYDEALK 633

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+   KY +RVRV+S      G  S  LCGGTHVS+TG+I    I+SESS+ AG+R
Sbjct: 634 TGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGAGVR 688

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAK- 776
           RI A TG+ +      + + LK  +S L V +  V+ ++EE+ EE     R++Q +  + 
Sbjct: 689 RIVAQTGRWSVETAFKEHQTLKKASSALGVGEEEVIQKIEELKEEIKDREREIQRLKQEL 748

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            KLQ+  E +    + D      +  EV+ +EL+++ D L+++ +  ++ +    K  K 
Sbjct: 749 LKLQIR-EVVKEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIAS-RKGDKI 806

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + +I V++++ D+ NA ++ R     +  GGGGGR  +AQ GG   +K  +A+
Sbjct: 807 NFVIGVSKEISDKVNAKEVIR-EVGKVLKGGGGGRADLAQGGGKAPDKFPEAV 858


>gi|121605522|ref|YP_982851.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|205830175|sp|A1VQK2|SYA_POLNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120594491|gb|ABM37930.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 874

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/868 (41%), Positives = 507/868 (58%), Gaps = 59/868 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   TVADIRKTFLDFFAAKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGVDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY+ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYEEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ IPGG PGS  E+G+R+IEIWN VFMQF          LP   +DTGMGLER+A
Sbjct: 187 FYDHGDHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAEDGSVTPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG    G+  +  RVI DH+R+++FL++DG+ P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAASRETGEADLGHKSL--RVIADHIRATAFLVSDGVNPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +  LLG   P    L+  L   MG AYP L      I E L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYLLGKKTPFFHKLVADLAGLMGDAYPRLAADAQRITEVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL+ G+ +LD  L+   K  +L G+VAFKL+DT+G PLD+  D+   RGL+ +D
Sbjct: 365 EERFFETLETGMQILDAALADGVK--VLPGEVAFKLHDTYGFPLDLSADVCRERGLS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ--FIGYDLLRGSKFMKED 472
              F  A+ +Q+++ARA           K        Y  T   F GY+ L      +E 
Sbjct: 422 EAGFTVAMNQQKAQARAAG---------KFKMDRALDYSGTGNVFTGYEHL------EET 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            K++                 AI   G       +GQ   +V D TPFYAE+GGQ GD G
Sbjct: 467 SKII-----------------AIYADGVSAAALKAGQNGVIVLDTTPFYAESGGQAGDEG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I    R  ++D  K    ++ HH  +  G L     +   ++ + R     NHSATHL
Sbjct: 510 ELISGSARFAVSDTLKIKADVYGHHGTLAEGTLNVGDHVSARVNKEVRAATVRNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  +  RFD  H+ P+T A+++ +E  VN  I  N      
Sbjct: 570 MHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPMTDAQIREVEARVNAEILANSATDAS 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E A  +GA  L G KY D VRV+S+        S  LCGGTHV  TG+I L  IV+
Sbjct: 630 EMDMEAAQKTGAMMLFGEKYGDSVRVLSIG------SSKELCGGTHVGRTGDIGLFKIVA 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES + +G+RR+EA+TGQ A ++L   +  ++S A  LK S   +  R+ ++ ++ + L  
Sbjct: 684 ESGVASGVRRVEAVTGQNALAYLQSLESTVQSAAGTLKASPSELQNRIGQVLDQVKALEK 743

Query: 771 QLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   K KL  +  D   L    +  +  ++  +   D+K L+  MD L+ K+++ +I+L
Sbjct: 744 EVAALKGKLASSQGDELMLQAVDVKGLKVLAARLEGADAKTLRETMDKLKDKLKTAVIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL 855
             +    K  +   VT D   +  A +L
Sbjct: 804 AAVDG-SKVQIAAGVTSDSTGKVKAGEL 830


>gi|254469063|ref|ZP_05082469.1| alanyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087873|gb|EDZ65156.1| alanyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 873

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/908 (40%), Positives = 546/908 (60%), Gaps = 59/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH ++ SSSL+P +DPTL+F N+GM  FK+ F G +KP Y   TT 
Sbjct: 7   NQIREIFLNFFREKGHTVVSSSSLVPSDDPTLLFANAGMNQFKDFFLGYKKPKYTTATTS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ F +   +
Sbjct: 67  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIQYAWELLTERFQIPAEK 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRIT------TNDNFWSMAETGPCGPCSEIFFD 178
           L +TVY ED EA+ +WK +  + A+KII+I        +DNFW M +TGPCGPCSEIF+D
Sbjct: 127 LLVTVYHEDTEAYDIWKNVIKIPAEKIIKIADKSEKYISDNFWMMGDTGPCGPCSEIFYD 186

Query: 179 QGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G  IPGG PGS  E+G+R+IEIWNLVFMQF +    E   LPK S+DTGMGLER++ VL
Sbjct: 187 HGADIPGGPPGSEDEDGDRFIEIWNLVFMQFNRNENGEMEALPKPSVDTGMGLERISAVL 246

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NY+IDLF++LI  + Q    K   ++ +  +VI DH+RS +FLI DG+ P+N+GR
Sbjct: 247 QSVHSNYEIDLFQNLIHDAAQALKCKDLSHSSL--KVIADHIRSIAFLINDGVQPSNDGR 304

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ +   LG TE  +M +L +L   M  AYPEL+     IE+T   E+++
Sbjct: 305 GYVLRRILRRAIRHGYKLGATESFLMPILNSLAKNMQEAYPELLTNIKKIEKTTLQEEDK 364

Query: 358 FGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+  G+ +L+    L+   K  +L+G VAFKL+DT+G P+D+  DI C      ID 
Sbjct: 365 FFETIANGMSILEQEINLTKKNKSTMLSGSVAFKLHDTYGFPIDLTADI-CREHNITIDQ 423

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+Q + EQ+++A+       + +  K   S+      T+F+ Y               
Sbjct: 424 AGFDQDMAEQKNKAK-------NASQFKAKDSIVIDIDPTKFLAY--------------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                     N   S +++I+   E   E  +     +V  ++PFYAE+GGQ+GDTG   
Sbjct: 462 --------THNEEFSTIESIILNNEPAVEVSANSTCNLVVKESPFYAESGGQVGDTGRIF 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D     + D QK   G+ +H   + RG L+ +  ++  +D+  R  +  NHSATHLLH 
Sbjct: 514 NDQAEFVVHDTQKLPNGVILHIGELVRGQLKIKDPVLCQVDHIRRDSIKRNHSATHLLHK 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL TILG HV Q GS +     RFD +HS  ++  E++ +E  VN+ I QN P    +M 
Sbjct: 574 ALKTILGDHVEQKGSLVNEFRTRFDFSHSSALSETEIQQVEQIVNNEILQNNPTSAEVMA 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A  SGA  L G KY+D VRV+++       +S  LCGGTHV++TG+I L  I++ES 
Sbjct: 634 LDKAKKSGAMMLFGEKYDDEVRVLTIG------NSKELCGGTHVNATGDIGLFKILNESG 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEA TG      +  Q++ L + A  LK ++ +V  +++++ ++ +  +   A
Sbjct: 688 ISSGVRRIEATTGVSLIQIIDKQNQLLNATAKELKTTKDDVAEKIKQVIDQVKTQEKTIA 747

Query: 776 KRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +L+  + + S + + D          +S  I  ++  +L++++D L+  I SGII+L 
Sbjct: 748 --QLKQKITNASKNDLLDQIEVIDGTKVLSTNIDNMEIPQLRALIDDLKNNIGSGIIILA 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            I+ + K ++ + VT+D+ ++F+A  +A   A ++ GG GGG+P MA +GG N N   +A
Sbjct: 806 TIN-QGKINIAVGVTKDITNQFHAGKIAGQLANMV-GGNGGGKPDMAMAGGQNINDLPEA 863

Query: 889 IAGVASFL 896
           +  +   L
Sbjct: 864 LIKIKKLL 871


>gi|330825460|ref|YP_004388763.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329310832|gb|AEB85247.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 873

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/909 (41%), Positives = 525/909 (57%), Gaps = 60/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +I+  W+LLT+ + L  
Sbjct: 66  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIRWGWELLTQVYKLPP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + T      N  +  +VI DH+R+++FL+ADG++P N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLANPSL--KVIADHIRATAFLVADGVIPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E LR E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LDG L+  G    L GDVAFKL+DT+G PLD+  D+   RG+ G+D
Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERGV-GVD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG--ATQFIGYDLLRGSKFMKED 472
              F  A+E Q+S ARA           K       +YG  A +F GY+ L         
Sbjct: 421 EAGFAAAMEHQKSTARAAG---------KFKMDRALEYGGAANRFTGYEHL--------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +G + IV A+   G  V    +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 463 -------------SGTAKIV-ALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D QK    ++ HH ++  G L    ++   +D   R     NHS THL
Sbjct: 509 LITAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  I  N     R
Sbjct: 569 MHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIERRVNAEILANTATDAR 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+
Sbjct: 629 VMDIESAQKTGAVMLFGEKYGETVRVLDIGT------SRELCGGTHVQRTGDIGLFKVVA 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEA+TG+ A ++L G +  +   A+ LK     +  R+    ++ + L+ 
Sbjct: 683 EGGVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEK 742

Query: 773 IHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ K +L     ++L+    ++  +  ++  +   D+K+L+  MD L+ K+++  I+L
Sbjct: 743 ELAQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K  +   VT D   R  A +L    A  + GG GGG+P MA +GG +     Q
Sbjct: 803 AAVDGD-KVQLAAGVTADSTARVKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDAEALPQ 860

Query: 888 AIAGVASFL 896
           A+A VA+++
Sbjct: 861 ALASVAAWV 869


>gi|139436944|ref|ZP_01771104.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC
           25986]
 gi|133776591|gb|EBA40411.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC
           25986]
          Length = 878

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/897 (40%), Positives = 532/897 (59%), Gaps = 55/897 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FL FF++ G +L PSSSL+P +DP+L+  N+GM  FK  + G++        
Sbjct: 2   TTAEIRSKFLNFFEERGLKLYPSSSLVP-DDPSLLLANAGMNQFKEYYQGKKTMKEIGAI 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVR     ND+D +G   RH +FFEMLG+FSFGG  K++A   A++L+TKEF L  
Sbjct: 61  SCQKCVRT----NDIDCIGEDGRHLSFFEMLGDFSFGGVSKQQACAWAFELITKEFKLPL 116

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY TV+ ED+E   +W+ + G++ D I R+  +DNFW+   TGPCGPCSEI+FD GE 
Sbjct: 117 DRLYFTVFTEDDETHDVWRSL-GVAEDHISRLGEDDNFWAAGPTGPCGPCSEIYFDMGEE 175

Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G P      + +R++E WNLVF Q+++Q       LP  ++DTGMGLERMA ++Q K
Sbjct: 176 VGCGSPDCKPGCDCDRFLEFWNLVFTQYDRQEDGSMPELPHRNLDTGMGLERMAAIMQHK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEG 296
           T NYD DL +HLI+  E+++G  Y+ ++        R+I DH R+  F+I+DGILP NEG
Sbjct: 236 TANYDGDLMQHLIKLGEEISGKTYDADDYSGASRSLRIIADHSRAVDFMISDGILPGNEG 295

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           R YVLRR++RRA+ + RLLG     +   +  +  +MG AYPEL++   L++  + SE+E
Sbjct: 296 REYVLRRLLRRAVFHGRLLGIEGAFLTKFIDEVNAQMGEAYPELLKNVALVKGIVASEEE 355

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG--ID 414
           RF  TLD G V LD  L+ L +   L GDVAFKL+DT G P+D+  +I    G AG  +D
Sbjct: 356 RFSTTLDNGRVYLDEALAALAEGAALPGDVAFKLHDTFGFPIDLTVEIA---GTAGHDVD 412

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY--DLLRGSKFMKED 472
           +  F   +E+Q++RARA++ G   G+   +W  L +K  A++F GY  D++ G+K     
Sbjct: 413 MDGFTACMEDQKARARANAKGDAWGSFNDVWVELSDKVAASEFDGYDNDVIEGAK----- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V AIV+ GE VE A +G+ VEVV D+TPFYAE GGQ GD G
Sbjct: 468 -------------------VVAIVRNGESVESAAAGEDVEVVLDRTPFYAEMGGQQGDAG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G+ L + D  K   G++ H A V  G L    ++   +D + R  L  NH+ATHL
Sbjct: 509 KLSAEGVVLTVADT-KNHNGLYAHVAHVADGTLTVGAAVTAALDAERRGFLRRNHTATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HVSQ GS +TP+ LRFD TH + ++S +LK++ED VN  I  + PVVTR
Sbjct: 568 LDAALKQVLGEHVSQAGSLVTPEHLRFDFTHFEALSSEQLKAVEDLVNQQIFASKPVVTR 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A A+GA AL G KY D VRVVSV  ED    S  LCGGTH ++T EI L  I+S
Sbjct: 628 VMGIDEAKAAGAVALFGEKYGDVVRVVSVGAED-QPFSRELCGGTHAANTAEIGLFKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ESS  + +RRIEA+T + A  ++  +   + + A+ LK     V  R+E +  E R+   
Sbjct: 687 ESSTGSNVRRIEAVTSKGALDYMADRLALVDAAATALKCRVDEVPARMENLQAELRETS- 745

Query: 773 IHAKRKLQLNVEDLSCHKI---ADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
              K+ L     D     I    +++    +++E   +++ +L++V D + +K+   +  
Sbjct: 746 NKLKKALTGGSSDAISSAIEGAVELDGYKLVVAELQGLEAADLRNVWDTVHQKVAGPVAC 805

Query: 827 LVGISKEKKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +V    EK    L+    D  +   F+A ++ +  A ++  G GGGRP+MAQ+GG N
Sbjct: 806 VVASVTEKGTPALLAAGSDDAVKAGFHAGNVIKQIAGLV-DGRGGGRPNMAQAGGKN 861


>gi|319763265|ref|YP_004127202.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317117826|gb|ADV00315.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 873

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/909 (41%), Positives = 524/909 (57%), Gaps = 60/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +I   W+LLT+ + L  
Sbjct: 66  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIHWGWELLTQVYKLPP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + T      N  +  +VI DH+R+++FL+ADG++P N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLANPSL--KVIADHIRATAFLVADGVIPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E LR E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LDG L+  G    L GDVAFKL+DT+G PLD+  D+   RG+ G+D
Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERGV-GVD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG--ATQFIGYDLLRGSKFMKED 472
              F  A+E Q+S ARA           K       +YG  A +F GY+ L         
Sbjct: 421 EAGFAAAMEHQKSTARAAG---------KFKMDRALEYGGAANRFTGYEHL--------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +G + IV A+   G  V    +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 463 -------------SGTAKIV-ALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D QK    ++ HH ++  G L    ++   +D   R     NHS THL
Sbjct: 509 LITAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  I  N     R
Sbjct: 569 MHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIECRVNAEILANTATDAR 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+
Sbjct: 629 VMDIESAQKTGAVMLFGEKYGETVRVLDIGT------SRELCGGTHVQRTGDIGLFKVVA 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEA+TG+ A ++L G +  +   A+ LK     +  R+    ++ + L+ 
Sbjct: 683 EGGVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEK 742

Query: 773 IHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ K +L     ++L+    ++  +  ++  +   D+K+L+  MD L+ K+++  I+L
Sbjct: 743 ELAQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K  +   VT D   R  A +L    A  + GG GGG+P MA +GG +     Q
Sbjct: 803 AAVDGD-KVQLAAGVTADSTARVKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDAEALPQ 860

Query: 888 AIAGVASFL 896
           A+A VA+++
Sbjct: 861 ALASVAAWV 869


>gi|257093631|ref|YP_003167272.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046155|gb|ACV35343.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 878

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/907 (40%), Positives = 530/907 (58%), Gaps = 54/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 11  AEIRDKFLKFFESKGHQIVASSSLVPHADPTLLFTNAGMNQFKDVFLGFDKRPYLRATTS 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LL   + L   R
Sbjct: 71  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIRYAWELLVDVYGLPPDR 130

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+ +W +  G+ A+++ RI  N       DNFW M +TGPCGPC+EIF+
Sbjct: 131 LWVTVYAEDDEAYDIWTREIGVPAERVERIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 190

Query: 178 DQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D       G      EEG+RYIEIWN VFMQF +        LPK S+DTGMGLER A V
Sbjct: 191 DHGEGIPGGPPGSPDEEGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERTAAV 250

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NY+IDLF  LI A+ + T      +  +  RV+ DH+R+ +FLIADG++P NEG
Sbjct: 251 LQHVHSNYEIDLFVRLIAAAARETASAELDSPSL--RVLADHIRACAFLIADGVIPGNEG 308

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +   LG        L+P L  EMGSAYPEL+  +  + + LR E+ 
Sbjct: 309 RGYVLRRIIRRAIRHGYKLGARAAFFHRLVPDLVAEMGSAYPELVSQQARVTDVLRQEEV 368

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +T++ G+ +L+G L+ L    + NG  AFKL+DT G PLD+  D+   RG++ +D+ 
Sbjct: 369 RFFETIEHGMSILEGELASLPGQGVFNGTTAFKLHDTFGFPLDLTADVCRERGVS-VDVA 427

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F+ A+ +Q+ +ARA           ++  +L      T F GY+ L             
Sbjct: 428 AFDAAMAQQKEQARA-------AGKFRMATALDYSGPPTTFHGYERL------------- 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      V+  V A+ + G  V+E   G    VV D+TPFYAE+GGQ+GD G    
Sbjct: 468 ----------DVTGKVLALYRDGSPVDELSEGDIGVVVLDETPFYAESGGQVGDRGVLQT 517

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G    + D QK    +F HH +V  G+LR +  +   +D   R +   NHSATHL+H A
Sbjct: 518 AGGIFAVEDTQKIQAAVFGHHGVVRTGVLRVDDGVAAKVDVLARARTVRNHSATHLMHKA 577

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS + P+  RFD  H+ P+++ E++ +E  VN+ I  N     RIM  
Sbjct: 578 LREVLGGHVQQKGSLVDPEKTRFDFAHNAPLSADEIRHVEVIVNNEILANAATDARIMPI 637

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  SGA  L G KY D VRV+++        S  LCGG HV  +G+I L  I++E+ +
Sbjct: 638 EEAQRSGAMMLFGEKYGDEVRVLTIG------SSKELCGGVHVRRSGDIGLFKILAETGV 691

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RR+EA+TG  A + +  Q   L   A+ +K     V  ++ ++ +  R L+   A+
Sbjct: 692 AAGVRRVEAVTGDNALALVQQQQALLAEAAAAVKAPVSEVPAKLAQVLDNVRSLEKELAR 751

Query: 777 RKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L     +DL     ++     ++ ++   D   L+S +D L+ K++S  ++L   +
Sbjct: 752 LKARLASAQGDDLLAQAVEVKGARVLAAVMDGADVNALRSTIDKLRDKLKSAAVVLAS-T 810

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K +++  VT DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+A 
Sbjct: 811 ADGKVTLIAGVTGDLTGKVKAGELVNMVARQV-GGKGGGRPDMAQAGGSDAANLPAALAS 869

Query: 892 VASFLKK 898
           V +++++
Sbjct: 870 VRAWVEQ 876


>gi|114566020|ref|YP_753174.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318869|sp|Q0AZQ1|SYA_SYNWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114336955|gb|ABI67803.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 880

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/909 (41%), Positives = 547/909 (60%), Gaps = 43/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR TFLE+F++ GH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MWSSAEIRKTFLEYFEERGHSVVESSSLVPVNDPTLLFTNAGMNQFKDVFLGLDKRKYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 61  ATSSQKCVRAGGKHNDLDTVGRTPRHHTFFEMLGNFSFGDYFKREAIGYAWEFLTEVVGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y +D+EA  LW +ISG+   +I+R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 PEEKLWVTIYQDDDEAADLWPEISGIDPGRIVRLGEKDNFWSMGDTGPCGPCSEILYDRG 180

Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                G P       + +R++EIWNLVFMQF +    E   LP+ SIDTGMGLER++++L
Sbjct: 181 IEYSCGAPDCGIGVCDCDRWLEIWNLVFMQFNRDESGEMTPLPRPSIDTGMGLERLSSIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +N+D DLF  +I+  E++TG  YE G      RVI DH R+ SFLIADG+LP+N+G
Sbjct: 241 QGVDSNFDTDLFIPIIKRIEELTGKAYEQGERGFPFRVIADHSRACSFLIADGVLPSNDG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ + R LG     +   +  +C  M  AYPEL++ +  I+E +R E+E
Sbjct: 301 RGYVLRRILRRALRFGRFLGIEGSFLYKNVDVVCDIMQEAYPELLEKQDFIKEVIRLEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TL+ GL   + ++    +  D ++ G+ AF LYDT+G PLD+ +D +       +D
Sbjct: 361 RFLLTLNDGLKKAEEIMERARQRGDNVIPGEEAFMLYDTYGFPLDLTED-MAEENQFTLD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++++EEQR RAR  + G      E++          + F GY+  R          
Sbjct: 420 KAGFDRSMEEQRQRARQANKGEDLLGQERLLSEKLAGIAPSSFTGYENSRD--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S++ AI++  E++++A++G++V ++  +TPFYAE+GGQ+ D G  
Sbjct: 471 --------------ESVLLAIIKGSELMDKALNGEEVILITARTPFYAESGGQVADCGII 516

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G    L++ DV KK     +H+ IVE G+L T   + L +D   R   + NH+ATHLLH
Sbjct: 517 KGQEGLLRVQDV-KKLSAWILHYGIVE-GVLTTGEGVSLQLDDPARMDTARNHTATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H  Q GS + P  LRFD +H K ++S EL  IE  VN+ I +  PV T + 
Sbjct: 575 RALREVLGEHAQQKGSLVEPARLRFDFSHLKALSSEELSRIEQMVNEAIWKLYPVTTTVT 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
               A   GA AL G KY + VRVV V+      +SS LCGGTHV +TG+I L  I  E 
Sbjct: 635 ALGQAREMGAMALFGEKYGEEVRVVQVD-----TYSSELCGGTHVQNTGQIGLFKITGEG 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
           SI +G+RRIEAITG  A  ++   +++LK  AS L+ S   +  R+E +    ++   ++
Sbjct: 690 SIGSGLRRIEAITGSYALEYIKQLEDELKKAASALRSSPLELAKRIENLNNSLKEKDKEI 749

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829
            +  ++L  +  D   +K   +N    +I EVD ++   L+   + L+ K+   I+ML  
Sbjct: 750 ENLLQRLSRSSSDELVNKAFQLNDAWILIEEVDIEDPGSLRQNAEMLKDKLGRAIVMLAS 809

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I K +K S +  V++DLL++         +A  + GGGGGGRP MAQ+GG + +K  +A+
Sbjct: 810 I-KGEKVSFVCFVSKDLLEQGLHAGKIVAAAAQVAGGGGGGRPDMAQAGGRDKSKISEAL 868

Query: 890 AGVASFLKK 898
           A     +KK
Sbjct: 869 AEARKMVKK 877


>gi|332041455|gb|EGI77817.1| alanyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 888

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/919 (40%), Positives = 528/919 (57%), Gaps = 73/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 7   SVADIRKTFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++  AW+LLT  + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRITTN-------DNFWSMAET 166
            +LY TVY ED+EA+ +W+ I   +G + +      +IIRI  N       DNFW MA+T
Sbjct: 127 DKLYATVYLEDDEAYGIWEDIFVKAGWTPERIRQENRIIRIGDNKGGRYKSDNFWMMADT 186

Query: 167 GPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           GPCGPCSEIF+D G  I GG PGS  E+G+R+IEIWN VFMQFE         LP   +D
Sbjct: 187 GPCGPCSEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFEMHEDGTVTPLPAPCVD 246

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285
           TGMGLER+A +LQ   +NY+IDLF  LI+A+ +  G +   N  +  RVI DH+R+++FL
Sbjct: 247 TGMGLERLAAILQHVHSNYEIDLFDALIKAAAREVGTQDLSNPSL--RVIADHIRATAFL 304

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP L + + 
Sbjct: 305 VSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVGELVRLMGDAYPRLKEQQQ 364

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            I E L++E+ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+ 
Sbjct: 365 RITEVLKAEEERFYETLANGMEILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVC 422

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +D   F  A+++Q+++ARA     G    +K   +L        F+GY+ L  
Sbjct: 423 RERGVT-VDEAGFKSAMDKQKNQARA----AGKFKMDK---ALDYTGAGNVFVGYEKLE- 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ + A+   G    +  SGQ   VV D TPFYAE+G
Sbjct: 474 ----------------------AAAKIVALYVDGTPTAQLKSGQDGVVVLDTTPFYAESG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  +    R ++ D QK    +  HH  +  G L    ++   ++   R     
Sbjct: 512 GQVGDEGLIVAGPARFEVADTQKIKADVHGHHGTLAAGTLNVGDTVTAQVNLSRRAATMR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS THL+H AL  +LG+HV Q GS +  D  RFD TH+ P+T A++  IE  VN+ I  
Sbjct: 572 NHSVTHLMHKALHEVLGAHVQQKGSLVDADKTRFDFTHNAPVTPAQIAEIERRVNEEILA 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N     R+++ E A A+GA  L G KY D VRV+ +        S   CGGTHV  TG+I
Sbjct: 632 NSATQARVLDIEAAKATGAVMLFGEKYGDTVRVLDIGT------SREFCGGTHVPRTGDI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IV ES + AGIRR+EA+TG  A  +L   +  +   A  LK     + GR+ ++ +
Sbjct: 686 GLFKIVGESGVAAGIRRVEAVTGANALGYLQTLESTVHQAAGALKAPAAELQGRITQVLD 745

Query: 766 EYRKL--QLIHAKRKLQLNVEDLSCHKIADVN--------FMSHIISEVDSKELKSVMDA 815
           + + L  ++   K KL  +  D    +  +V          ++  +   D+K L+  +D 
Sbjct: 746 QVKALEKEIAALKGKLASSQGDELMAQAVEVKGRDGVALRVLAATLQGADAKVLRETLDK 805

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L+ K+++  I+L  + +  K  +   VT D + +  A +L    A+ + GG GGG+P MA
Sbjct: 806 LKDKLKTAAIVLATV-EGGKVQIAAGVTADSVGKIKAGELVNFVAQQV-GGKGGGKPDMA 863

Query: 876 QSGGPNGN---KADQAIAG 891
            +GG + +   KA QA+ G
Sbjct: 864 MAGGTDASGLPKALQAVQG 882


>gi|253999899|ref|YP_003051962.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986578|gb|ACT51435.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 874

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/907 (41%), Positives = 532/907 (58%), Gaps = 58/907 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y    + QK
Sbjct: 6   IRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRAASSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L + +L 
Sbjct: 66  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLPKEKLL 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179
           +TVY ED+EA+ +W K  G+ ADK+IRI  N       DNFW M +TGPCGPC+EIF+D 
Sbjct: 126 VTVYAEDDEAYDIWTKEMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFYDH 185

Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G  I GG PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER++ VLQ
Sbjct: 186 GAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAVLQ 245

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
               NY+IDLF+ LI+A+ + T  K       + +V+ DH+R+ SFLIADG++P NEGRG
Sbjct: 246 GVHANYEIDLFQALIKAAARET--KTTDLESPSLKVLADHIRACSFLIADGVIPGNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG        L+P L  EMG AYPEL+  K  + +TL+ E++RF
Sbjct: 304 YVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNKTRVMDTLKQEEDRF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T++ G+ +L+  L+ +     +  NG+ AFKL+DT+G PLD+  D+   R +  +D  
Sbjct: 364 FETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT-VDAA 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F+ A+  Q+ +ARA           K+  +L+    ATQF GY+ L             
Sbjct: 423 AFDAAMARQKDQARA-------AGKFKMSANLEYDGAATQFHGYEKLES----------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAI 535
                        ++V A+ + G  V+    G+   VV D TPFYAE+GGQ+GD+G    
Sbjct: 465 ------------DALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDSGELRA 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DGI   + D QK    +F HH +V  G +    SL   ++ + R     NHSATHL+H 
Sbjct: 513 SDGI-FSVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATHLMHK 571

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  +  RFD  H+ P+T  E++ +E  VN  I  N     R+M 
Sbjct: 572 ALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQARVMG 631

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I  ES 
Sbjct: 632 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVSRTGDIGLFKITGESG 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RR+EA TG+ A   +  Q   L  +A+ LK     V  ++ ++ +  + L  +L 
Sbjct: 686 VAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLEKELA 745

Query: 774 HAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL  +  D   ++  D   +  ++  +   D+  L+  MD L+ K++S  I+L   
Sbjct: 746 RLKSKLASSQGDDLVNQAVDLGGIKVLAATLDGADANTLRETMDKLKDKLKSAAIVLAS- 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K S+   VT DL+ +  A +L    A  + GG GGG+P MA +GG + ++  QA++
Sbjct: 805 ANDGKVSLAAGVTPDLIAKLKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDASQLPQALS 863

Query: 891 GVASFLK 897
            V  ++K
Sbjct: 864 SVEGWVK 870


>gi|220903571|ref|YP_002478883.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867870|gb|ACL48205.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 892

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/917 (41%), Positives = 532/917 (58%), Gaps = 44/917 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF ++ HE++ S  +IP NDP+L+F NSGMV FK +F G+EK  Y  
Sbjct: 1   MLTAKEIRRRYLDFFHRHQHEIVASGPIIPPNDPSLLFANSGMVQFKKLFLGEEKRSYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R  GKHNDL+NVGRT RHHTFFEMLGNF+FG YFK  AI  AWD +TKE +L
Sbjct: 61  ATTCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFAFGDYFKREAITWAWDFVTKELEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+ ED+EA  LW +I+GL A++I+R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKEKLWVTVFREDDEAAVLWAEIAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYVDQG 180

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C P    G+  + +R++EIWNLVF QF+Q     R +L + +IDTGMGLERMA V 
Sbjct: 181 ADMSCGPDCGIGNC-DCDRFLEIWNLVFTQFDQSADGTRTLLARPNIDTGMGLERMAAVA 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNI-VNHRVIVDHLRSSSFLIADGIL 291
           Q K +N+D DLF+ +IQ +  + G+ Y     + N++    RVI DH R+++FL+A G+L
Sbjct: 240 QGKRSNFDCDLFQDIIQYAAGLAGVTYSFSAPDTNDVDTALRVIADHSRAAAFLVAGGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRR++RRA+ +A L+G  EP M  +   +   MG AYPEL+++   I+  +
Sbjct: 300 PSNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGDAYPELVESADFIDRAV 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E++RF  TL +GL LL+  L+ L    I  + GD  FKLYDT+G PLDI+ D+   RG
Sbjct: 360 FEEEQRFSLTLKKGLDLLEEELAALKARGITLIPGDFCFKLYDTYGFPLDIVTDVAEKRG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLG---LGSGTTEKIWF-SLKEKYGATQFIGYDLLRG 465
               D   F + ++EQR RAR H      LG G   +  F SL +    ++F+GY+ L  
Sbjct: 420 FHA-DAEGFEKYMQEQRKRARDHQKKGGLLGQGEDGQSPFKSLADGGAESRFVGYEGL-- 476

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                       Q P       V+ ++ A  Q  +++ E  SG  V    + TPFY E G
Sbjct: 477 ----------TAQSP-------VTILLDAAGQPVDVLGEGESGYAVT---EATPFYGEGG 516

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ GDTG         ++    K A  + VH   V RG +     + L +D   R+  + 
Sbjct: 517 GQAGDTGLMSATSGEARVLTTHKPAPQLLVHEIEVVRGEILQGKEVRLAVDPDERKATAR 576

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ THLLH AL  +LG HV Q GS +    LRFD +H   +T  EL ++E  VN  I  
Sbjct: 577 NHTCTHLLHAALRRVLGPHVKQAGSLVDGRRLRFDFSHIAALTPEELAAVERQVNAAILA 636

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGE 704
           +L V  R M   DA+A+GA AL   KY   VRV++V   E     S  LCGGTH++ TGE
Sbjct: 637 DLEVSAREMPMADAVAAGAIALFNEKYGSTVRVLTVAGAEMCDPESVELCGGTHLARTGE 696

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
               +IVSES + AG+RRIEA+TG  A  H + Q  +L SLA+ LK   G +  RV+ + 
Sbjct: 697 AGAFFIVSESGVAAGMRRIEAVTGWNAYGHAVEQRAELGSLAALLKSKPGQLAERVQTLH 756

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQ 821
            E +KL+    K             +  +VN +  + + +D+   K L+ VMD ++ ++ 
Sbjct: 757 GEVKKLRKASEKAAAAPASGAELVARAVEVNGVRLLAARLDNVPVKALREVMDDVRSRLS 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              +  +   +E K  +L+ V++DL  RF A  L +  A    GG GGGRP MAQ+GG  
Sbjct: 817 ENAVACLATVEEGKVGMLVYVSKDLHGRFTAPALIKTVAAPC-GGSGGGRPDMAQAGGNQ 875

Query: 882 GNKADQAIAGVASFLKK 898
                +A A +   +++
Sbjct: 876 PEGLAEAFAALKKCIEQ 892


>gi|150021161|ref|YP_001306515.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|205830274|sp|A6LMH9|SYA_THEM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149793682|gb|ABR31130.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 859

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/914 (39%), Positives = 552/914 (60%), Gaps = 79/914 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
             IR  FLEFF+K GH++LPS+SLIP +DP LMFT +GMVPFK IF G+  PVY  VTT 
Sbjct: 4   EEIRQLFLEFFEKKGHKILPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRVTTC 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R      D++NVGRT RHHTFFEMLGNFSFG YFK  AI+ AW+ +T+   + + R
Sbjct: 63  QKCIRT----TDIENVGRTPRHHTFFEMLGNFSFGDYFKREAIEWAWEFVTQVLKIPEER 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECI 183
           L+I+VY+EDEEA+ +W+KI G+S++KI+++   DNFW  A  TGPCGP +EIF+D G+ +
Sbjct: 119 LWISVYEEDEEAYDIWRKI-GVSSNKIVKLGKEDNFWGPAGPTGPCGPDTEIFYDTGKEV 177

Query: 184 P---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           P   G  P       R++EIWNLVF ++ Q    +   L + +IDTG GLER+A ++Q  
Sbjct: 178 PITDGKEPNPGNTEGRFVEIWNLVFTEYYQDENGQLLPLKRKNIDTGAGLERIAAMMQGV 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N+D DLF  +I     V  ++Y  +  + V+ RVI DH+R+  FLI+DG+ P+NEGRG
Sbjct: 238 YYNFDTDLFLPIINRITDVLNVEYGRDEKHDVSIRVIADHIRALVFLISDGVFPSNEGRG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA  + ++LG  +P + +++ A+  +MG  YPE+++ +  ++E +  E+ERF
Sbjct: 298 YILRRILRRAARHGKMLGSEKPFLHNIVDAVVEKMGKIYPEIVEKQSFVKEIIYGEEERF 357

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            + L++GL ++D ++   G    ++G+ AFKLYDT+G PLDI++D+    G   +D   F
Sbjct: 358 LQNLNKGLDIVDKIVKETGGK--IDGEAAFKLYDTYGFPLDILRDLANENGYI-LDEEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG----ATQFIGYDLL---------RG 465
           N+ +E+QR +AR       +G  E   FS +  Y     +T+F+GYD+L         R 
Sbjct: 415 NKYMEQQRKKARE-----AAGEVE---FSERTDYETLDISTKFVGYDVLSTNARVLKIRT 466

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
            KF+ E + V C                                  E++ D+TPFY E G
Sbjct: 467 EKFVDEVKDVEC----------------------------------ELILDETPFYPEKG 492

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G   G      +T+V    EGI VH   + +G +R   ++  ++D + R+  + 
Sbjct: 493 GQVADKGVIKGKNGEFVVTNVYVPVEGIIVHKGKL-KGKIRVGDAIFASVDEKKRKATAR 551

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+HV Q GS + P+ LRFD TH   +T  E++ IE  VN+ I +
Sbjct: 552 NHTATHLLHAALRKVLGTHVRQAGSLVAPERLRFDFTHYAALTKEEIEKIEKMVNEKILE 611

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T++M+ ++AI +GA AL   KY D+VRVV +        S  LCGGTHV +TGEI
Sbjct: 612 AIDVNTKVMSYDEAIKNGAMALFEEKYGDKVRVVRIR-----DFSEELCGGTHVKNTGEI 666

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I+SESS+ AG+RRIEAITG  + ++L   +   K +   L  +  NV  ++E++ E
Sbjct: 667 GLFKIISESSVSAGVRRIEAITGFASLTYLENLETNWKKIKEELDATDENVFVKIEKLKE 726

Query: 766 EYRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             ++L+L I   +K  +N++ +  + +   N + +++ E +  E  ++ D   K I  G+
Sbjct: 727 GIKQLELKIKEIQKNMINIKQI-LNNVQIENEIKYLVYEFEGVEQNTLRDLADKLIDRGV 785

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++V  +K+    +LIV  +   ++ +A ++A+  +K+L  GGGGGRP  AQ+GG + +K
Sbjct: 786 DLVVFFNKQGDKVILIVKRKKTFEKLHAGNIAKSLSKIL-DGGGGGRPDFAQAGGKDVSK 844

Query: 885 ADQAIAGVASFLKK 898
            ++A + +   L++
Sbjct: 845 INEAKSKLIEILRE 858


>gi|254470073|ref|ZP_05083477.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960384|gb|EEA95580.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 551

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/566 (55%), Positives = 403/566 (71%), Gaps = 26/566 (4%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GMVPFKN+FTG EK  Y   T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMVPFKNVFTGLEKRDYVRATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFKE AI+LAW+L+TKE+ L   +L +TVY ED+EAF +WKK++G + +KIIRI T
Sbjct: 61  SFGDYFKENAIELAWNLITKEYGLPADKLLVTVYSEDDEAFNIWKKLTGFADEKIIRIPT 120

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQE 215
           +DNFW+M +TGPCGPCSEIF+D GE I GG PGS EE G+R+IEIWNLVFMQ+EQ    +
Sbjct: 121 SDNFWAMGDTGPCGPCSEIFYDHGEQIWGGPPGSPEEDGDRFIEIWNLVFMQYEQL-ADK 179

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI 275
           R  LP+ SIDTGMGLER A ++Q   NNY+IDLFK LI +SE +TG++  G    +HRVI
Sbjct: 180 RIDLPRPSIDTGMGLERFAAIMQGVHNNYEIDLFKALIASSEHLTGVEAAGKAQASHRVI 239

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
            DHLRS +FLIADG+LP+NEGRGYVLRRIMRRAM +A LLG  EP++  +LP L  EMG 
Sbjct: 240 ADHLRSMAFLIADGVLPSNEGRGYVLRRIMRRAMRHANLLGAKEPVIFKMLPTLVREMGQ 299

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PEL +A+ LIEET++ E++RF KTL+RGL LL+   S LG  + L+G+ AFKLYDT+G
Sbjct: 300 AFPELPRAEKLIEETIQLEEKRFIKTLERGLGLLEDATSSLGSGDQLDGETAFKLYDTYG 359

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ QD L  R +A +D   FN A+E QR+ ARA   G G   T+ IWFS+KE+ GAT
Sbjct: 360 FPLDLTQDALRNREIA-VDTDGFNTAMERQRAEARAAWAGSGDAATDAIWFSIKEQAGAT 418

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GY+                       T     +V ++V+ GE V+    G++  ++ 
Sbjct: 419 EFLGYE-----------------------TEKAEGVVLSLVKDGEEVKVLKQGEEGSLIL 455

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +QTPFY E+GGQ+GD G  + DG+ + +T+ QKKA+G+FVH   VE G +  + +L L +
Sbjct: 456 NQTPFYGESGGQVGDCGTMVADGVSITVTNTQKKADGLFVHSVRVESGDVNVDDALELIV 515

Query: 576 DYQNRRQLSINHSATHLLHHALSTIL 601
           D+  R  +  NHSATHL+H   +  L
Sbjct: 516 DHARRSAIRSNHSATHLVHERFAKCL 541


>gi|313201870|ref|YP_004040528.1| alanyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312441186|gb|ADQ85292.1| alanyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 874

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/907 (41%), Positives = 533/907 (58%), Gaps = 58/907 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y    + QK
Sbjct: 6   IRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRAASSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L + +L 
Sbjct: 66  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLPKEKLL 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179
           +TVY ED+EA+ +W +  G+ ADK+IRI  N       DNFW M +TGPCGPC+EIF+D 
Sbjct: 126 VTVYAEDDEAYDIWTREMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFYDH 185

Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G  I GG PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER++ VLQ
Sbjct: 186 GAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAVLQ 245

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
               NY+IDLF+ LI+A+ + T  K       + +V+ DH+R+ SFLIADG++P NEGRG
Sbjct: 246 GVHANYEIDLFQALIKAAARET--KTTDLESPSLKVLADHIRACSFLIADGVIPGNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG        L+P L  EMG AYPEL+  +  + +TL+ E++RF
Sbjct: 304 YVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNQTRVMDTLKQEEDRF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T++ G+ +L+  L+ +     +  NG+ AFKL+DT+G PLD+  D+   R +  +D  
Sbjct: 364 FETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT-VDAA 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F+ A+  Q+ +ARA           K+  +L+ +  ATQF GY+ L             
Sbjct: 423 AFDAAMARQKDQARA-------AGKFKMSANLEYEGAATQFHGYEKLES----------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAI 535
                        ++V A+ + G  V+    G+   VV D TPFYAE+GGQ+GD+G    
Sbjct: 465 ------------DALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDSGELRA 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DGI   + D QK    +F HH +V  G +    SL   ++ + R     NHSATHL+H 
Sbjct: 513 SDGI-FTVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATHLMHK 571

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  +  RFD  H+ P+T  E++ +E  VN  I  N     R+M 
Sbjct: 572 ALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQARVMG 631

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I  ES 
Sbjct: 632 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVSRTGDIGLFKITGESG 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RR+EA TG+ A   +  Q   L  +A+ LK     V  ++ ++ +  + L  +L 
Sbjct: 686 VAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLEKELA 745

Query: 774 HAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL  +  D   ++  D   +  ++  +   D+  L+  MD L+ K++S  I+L   
Sbjct: 746 RLKSKLASSQGDDLVNQAVDLGGIKVLAATLEGADANTLRETMDKLKDKLKSAAIVLAS- 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + + K S+   VT DL+ +  A +L    A  + GG GGG+P MA +GG + ++  QA++
Sbjct: 805 ANDGKVSLAAGVTPDLIAKLKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDASQLPQALS 863

Query: 891 GVASFLK 897
            V  ++K
Sbjct: 864 SVEGWVK 870


>gi|309389100|gb|ADO76980.1| alanyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 877

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 370/912 (40%), Positives = 549/912 (60%), Gaps = 64/912 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF+  GH +L S+ LIP +DPTL++ N+GM PFK  F G  +P    ++T QK
Sbjct: 8   IRQAYLDFFESKGHLILDSAPLIPKDDPTLLWINAGMAPFKPYFNGSLEPPKTRISTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE AI  AW+ +T+  +L++ RL+
Sbjct: 68  CIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEEAISWAWEFVTEVLELEEDRLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180
           IT+Y+EDEEAF +W    GL  ++I+R+   +NFW +  TGPCGPCSEI +D+G      
Sbjct: 124 ITIYEEDEEAFAIWHDKVGLDEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGPEAGES 182

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E + GG      EG+RY+EIWNLVF Q+      E   LP  +IDTGMGLER+A++LQ 
Sbjct: 183 EEDVLGG------EGDRYLEIWNLVFTQYNYTEAGEYQELPNKNIDTGMGLERVASILQA 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL K LI    +++G+ Y+ +  ++ ++RVI DH+RS+S  I+DG LP+NEGR
Sbjct: 237 TETNFETDLIKPLIDQVVEMSGIDYQKDEQSLTSYRVIADHIRSASVAISDGALPSNEGR 296

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA  Y R LG+ EP +  L+      + +  P+L +    ++  ++SE++ 
Sbjct: 297 GYVIRRLIRRAARYGRKLGFKEPFLYQLVEKTAEIVAAVAPDLKKQLAHVKNVIKSEEKS 356

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL +L+ +L++L  +  E+++G  AF+LYDT+G PLD+ +DI    G+  +D 
Sbjct: 357 FLQTLEQGLNILEDILNNLKAENKEVISGQDAFRLYDTYGFPLDLTEDIAAEEGIK-VDQ 415

Query: 416 ISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
             F + +E QR RAR         +G  EKI+   +++  A  F GY  L+         
Sbjct: 416 KGFEKEMEAQRKRAREARAETSFNNGEIEKIYAEYQDQIEARNFTGYHSLQAKA------ 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         +  +VKA   Q  +     +G K E++  +TPFYAE+GGQLGD G 
Sbjct: 470 -------------QIVGLVKAEKAQKSL----KAGDKAEIILTKTPFYAESGGQLGDKGV 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHL 592
              D    ++ D  KKAE +FVH   V++G +     +   + Y NRR+ +  +HSATHL
Sbjct: 513 IKNDQFEAEVKDTVKKAE-VFVHQVEVKKGKIEVGEEVTAVV-YHNRREATARHHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q+GS + PD LRFD TH   ++S EL+ +E  VN  I +N PV T 
Sbjct: 571 LHKALKEVLGEHVNQSGSLVAPDRLRFDFTHFSALSSQELEELERKVNKAIRENYPVETE 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I   ++A   GA AL G KY   VRVV +     G  S  LCGGTHV +TG+I    I++
Sbjct: 631 IKAIDEAKDMGATALFGEKYGQEVRVVKM-----GDFSLELCGGTHVRATGDIGAFKIIN 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG+ A  +   + E L  LA+ LK    N++ RV+++ +E ++L+ 
Sbjct: 686 ESGIAAGVRRIEAVTGEYALDYFNSKLELLNQLAAELKTDPNNLLQRVKQVKKEQKELEK 745

Query: 773 IHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L     +DL     ++A +N ++  + ++D+  L+++ D L+ KI SGII+L
Sbjct: 746 ELETMKEKLAGSKKDDLIDQLEEVAGINLLTAELEDLDNSALRNLTDQLKDKIDSGIIVL 805

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                E K   +  V+EDL+ + F A ++    AK+  GGGGGGRP MAQ+GG       
Sbjct: 806 AS-KGENKVIFVASVSEDLIAKGFKAGNIIAQVAKI-AGGGGGGRPDMAQAGGSKPENTS 863

Query: 887 QAIAGVASFLKK 898
            A+A V + +K+
Sbjct: 864 AALAEVKNIIKE 875


>gi|251798323|ref|YP_003013054.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545949|gb|ACT02968.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 877

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 364/907 (40%), Positives = 534/907 (58%), Gaps = 69/907 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +L FF+   H + PS+SL+P NDP+L++ N+GM P K  F G+  P    +T  
Sbjct: 4   SEIRSKWLSFFESKRHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRITNS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEF-DLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT KE+   D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTSKEWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            RL +TVY EDEEA+K W +  GL A++I ++  ++NFW + E GPCGPC+EIF+D+GE 
Sbjct: 120 DRLSVTVYPEDEEAYKYWNEKIGLPAERIYKL--DENFWDIGE-GPCGPCTEIFYDRGEK 176

Query: 182 --------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                   C PGG      E ER++E+WNLVF QF          LP  +IDTG GLER 
Sbjct: 177 YGDLNDPECWPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERF 230

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGIL 291
           A++LQ+  +N+D DLF  +I+ + ++  +KY  N+   V  +VI DH+R+ +F + DG++
Sbjct: 231 ASILQDVDSNFDTDLFIPIIERTCEIASVKYHVNDEHDVALKVIADHIRTVAFAVGDGVM 290

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGY++RR++RRA+ Y + +G   P +  L   +   MG  YPE++  +  IE  +
Sbjct: 291 PSNEGRGYIIRRLLRRAVRYGKTIGIDRPFLYELTSVVGEVMGVYYPEVVDKREFIERVI 350

Query: 352 RSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           R+E+ERF +TL  GLV+L  +++     G  EI  G+ AF+LYDT+G P D+ +D     
Sbjct: 351 RTEEERFHETLSDGLVMLSDLVATARKAGTTEI-GGEDAFRLYDTYGFPFDLTEDFASEN 409

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F+ A+E QR RARA     G    +     L +    ++F+GY+ L     
Sbjct: 410 GMT-VDREGFDAAMEAQRERARAARQDTGGMNVQG--GPLADFTVKSEFVGYNELV---- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + + AIV +  +V+    G +V V+ D+TPFYAE+GGQ+
Sbjct: 463 -------------------TEAQITAIVHEDSLVDLVGEGSRVLVLLDRTPFYAESGGQI 503

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G  +G+G  LQ+ DV K   G  VHHA+V  G +RT  ++   +    R  +  NH+
Sbjct: 504 GDKGTIVGNGFTLQVEDVTKAPHGQSVHHAVVASGTVRTGETVEAVVIRSVREDVIKNHT 563

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  D LRFD +H   IT  EL  IE  VN+ I    P
Sbjct: 564 ATHLLHKALKEVLGDHVNQAGSLVQADRLRFDFSHFGSITPEELTEIERKVNEQIWIGTP 623

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV       +A A GA AL G KY D VRVV V     G +S  LCGG HV++T +I + 
Sbjct: 624 VVIESKQIAEAKAMGAMALFGEKYGDIVRVVQV-----GNYSIELCGGCHVANTSQIGMF 678

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            +VSES I +G+RRIEA+TG+ A S++ GQ + LK  ++ LK +  +V  R+E ++ + +
Sbjct: 679 KLVSESGIGSGVRRIEAVTGRHAYSYMEGQLDLLKQASALLKANNNDVPKRIEALFAQVK 738

Query: 769 KL----QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L    + + AK  +++    + +   + DV  +S  +S      L+ + D L+ K+ S 
Sbjct: 739 ELGRENESLQAKLSRIEAGSLEQNAKTVGDVTVLSAKVSAPTMDALRGIADELKAKLPSA 798

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L G  +E K S++  V+ DL+ + F+A  + + +A    GG GGGRP MAQ+GG + 
Sbjct: 799 VIIL-GAVQEDKVSLVAAVSADLVKKGFHAGKIVKEAAAHC-GGSGGGRPDMAQAGGKDA 856

Query: 883 NKADQAI 889
           +K D+A+
Sbjct: 857 SKLDEAL 863


>gi|253574903|ref|ZP_04852243.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845949|gb|EES73957.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 874

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 370/913 (40%), Positives = 532/913 (58%), Gaps = 67/913 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +LEFF   GH++ PS+SL+P NDP+L++ N+GM P K  F G+ KP    +   
Sbjct: 4   SEIRSKWLEFFASKGHKIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRIKPENPRLANS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTDKKWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            RL +TVY EDEEAFKLW +  G+ AD+II++   DNFW + E GPCGPC+EIF+D+GE 
Sbjct: 120 DRLSVTVYPEDEEAFKLWNEKIGIPADRIIKL--EDNFWDIGE-GPCGPCTEIFYDRGEA 176

Query: 182 --------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                   C PGG      E ER++E+WNLVF QF          LP  +IDTG GLER 
Sbjct: 177 YGDLSDPECYPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERF 230

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGIL 291
           A++LQ+  +N+D DLF+ +IQ +  + G+ Y    ++ V  +VI DH+R+ +F +ADG+L
Sbjct: 231 ASILQDVNSNFDTDLFQPIIQKTASLAGVTYGAAEDSDVALKVIADHIRTVTFAVADGVL 290

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYV+RR++RRA+ Y +L+G  +P M  L+  +   MG+ YP+++  +  IE+ +
Sbjct: 291 PSNEGRGYVIRRLLRRAVRYGKLIGLDKPFMFSLVETVGDIMGTYYPDVVIKREFIEKVI 350

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           R+E+ERF +TL  GL +L  + +     G+ +I +GD AFKLYDT+G PLD+ +D     
Sbjct: 351 RTEEERFHETLSDGLAILADISAEAKAQGRTQI-SGDDAFKLYDTYGFPLDLTEDFAAEH 409

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL+ +D   F  A+EEQR RARA     GS   +     L +    T+F+GY+ L     
Sbjct: 410 GLS-VDREGFEAAMEEQRERARAARHESGSMMVQG--GVLADFTTKTEFVGYNELE---- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V++ + AIV     V+    GQ  +V+   TPFYAE+GGQ+
Sbjct: 463 -------------------VTTSIVAIVVDDAFVDTLGEGQSGQVILASTPFYAESGGQV 503

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    D     +  + K   G  VH   V+ G LR    +  ++D + R     NH+
Sbjct: 504 SDQGTIHNDSASATVEGLFKAPHGQHVHQVTVKTGELRVGAEVTASVDREQRSHTVKNHT 563

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL   LG HV+Q GS + P  LRFD +H   I+  EL  IE  VN+ I   LP
Sbjct: 564 ATHLLHKALKETLGEHVNQAGSLVEPQRLRFDFSHLGSISPEELAEIERRVNEQIWNALP 623

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T +   ++A A GA AL G KY D VRVV V     G +S  LCGG HV+++ EI L 
Sbjct: 624 VTTSLKPIDEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVNNSAEIGLF 678

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I +G+RRIEA+TG+ A   + GQ + LK  A  LK +  +V  RVE ++++ +
Sbjct: 679 KIVSESGIGSGVRRIEAVTGRGAYLFMDGQLDLLKQAAGLLKANVNDVPKRVEGLFQQLK 738

Query: 769 KLQLIHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L   +   + +L+V    +L+     +     ++  +       L+++ D L+ K+   
Sbjct: 739 ELSRENESLQSKLSVIEAGELTSQVVSVGQTKLLAARVQAGSMDALRTLADELKVKLPDA 798

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L   +++K   V++V  E++    +A  L +  A V  GGGGGGRP MAQ+GG + +
Sbjct: 799 VLVLGAPNEDKVNFVVVVPKEEVARGLHAGKLVKEIAAVC-GGGGGGRPDMAQAGGKDAS 857

Query: 884 KADQAIAGVASFL 896
           K D+A+   A ++
Sbjct: 858 KLDEALKVAAEWI 870


>gi|323702194|ref|ZP_08113861.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532881|gb|EGB22753.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 877

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 378/905 (41%), Positives = 561/905 (61%), Gaps = 51/905 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF++ GH++LPS+SLIP NDP++++T +GMVPFK  FTGQ  P Y+ VTT QK
Sbjct: 6   IREAFLRFFEERGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYKRVTTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D+++VGRT RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L   +L+
Sbjct: 66  CIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKEKAIPWAWEFVTEHLKLPADKLW 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           IT+Y +D+EAF +W  + G+ A++I+R+  + NFW +   GPCGPCSEI+ D GE    G
Sbjct: 122 ITIYLDDDEAFDIWHNVVGVPAERIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGETRGCG 180

Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  G   + +R++EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ+  +N+
Sbjct: 181 SPNCGVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLKNKGIDTGMGLERVASVLQQVNSNF 240

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D DLF+ ++  +  + G KY  +  V+   +VI DH R+ +F + DG LP NEGRGYV+R
Sbjct: 241 DTDLFREIMDFTANMVGQKYGQDARVDLALKVIADHCRAVTFAVNDGALPGNEGRGYVIR 300

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+ + R+LG  EP +  +  A+  +M  AYP+L Q    I   +R+E+ERF +TL
Sbjct: 301 RLLRRAVRFGRVLGVHEPFLYKVAGAVINQMAIAYPDLKQRTDHILRVIRTEEERFLETL 360

Query: 363 DRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             G  +L  ++S     GK EI +G  AF+LYDT G PL++ ++I   +GL+ +D   F 
Sbjct: 361 AAGSDILASLISEARAAGKTEI-SGQDAFRLYDTFGFPLELTREIASEQGLS-VDEDGFT 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            A+EEQR RAR+        +   + + +L+E+ G T+F+GY  L        D  VL  
Sbjct: 419 AAMEEQRRRARSARQETEYLSERGVMYKALREELGETRFVGYGTLTA------DANVLAL 472

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                L +G+  I             AV+G++VE++ D TP YAE+GGQ+ D     G  
Sbjct: 473 -----LKDGLQEI------------SAVAGEEVEIILDVTPCYAESGGQVADYATLTGPD 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + ++I  V K  EG+FVH   V  G+L+   S+ + +D + R+  + NHSATHLLH AL 
Sbjct: 516 LEVEIYSVNKPVEGLFVHRGKVVSGVLKRHDSVKVEVDARRRQDTARNHSATHLLHKALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD TH   +T  ELK +E+ VN  +  NL V     +   
Sbjct: 576 QVLGDHVNQAGSLVEPDRLRFDFTHYAALTPEELKQVEELVNQAVLANLSVDVFETSLSK 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GAAAL G KY  +VRVV +     G  S  LCGGTH++ T E+ L  I++E+S+ A
Sbjct: 636 AKAMGAAALFGEKYGKQVRVVKM-----GDFSLELCGGTHLTCTAEVGLFKIINETSVGA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKR 777
           G+RRIEA+TG     +L  ++E+L+ +A+ +K  +  +V RVE + ++ + L Q I A R
Sbjct: 691 GLRRIEAVTGPGVLRYLAAKEEQLQEIAAVIKSPEHELVRRVEALVQQNKSLEQEIEALR 750

Query: 778 -KL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            KL +  V+D+     ++  V  ++ +++  D   L+S++D L+ K+ SG+I+L G    
Sbjct: 751 GKLARAEVQDILGQVQEVKGVPVLAAVVAAPDMDNLRSMVDMLRDKLGSGVILL-GSKAG 809

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K +++  VT+DL+ R  +A +L +  AK++ GGGGGGRP MAQ+GG + +K  +AI  V
Sbjct: 810 EKVNLVAAVTKDLVGRGLHAGNLVKQIAKMV-GGGGGGRPDMAQAGGKDPSKLKEAIDQV 868

Query: 893 ASFLK 897
            + ++
Sbjct: 869 IAVVE 873


>gi|157273379|gb|ABV27278.1| alanyl-tRNA synthetase [Candidatus Chloracidobacterium
           thermophilum]
          Length = 880

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 377/909 (41%), Positives = 534/909 (58%), Gaps = 60/909 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL++F ++GH ++ SS ++P +D TL+FTN+GM  FK++FTG+E   Y    + QK
Sbjct: 7   IRRRFLDYFARHGHRIVKSSPVLPPDD-TLLFTNAGMNQFKDVFTGRETREYTRAASSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFKE AI  AW+LL +EF L   RL+
Sbjct: 66  CIRAGGKHNDLDEVGKTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLLREFGLPLERLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TVY++D+EAF LWKK+ G  AD+I+R    +NFW M ETGPCGPCSEI +  G+ +   
Sbjct: 126 FTVYEDDDEAFALWKKV-GAPADRILRFGKKENFWQMGETGPCGPCSEIHYFLGDDLADN 184

Query: 187 LPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            P   +  G+  IEIWNLVFMQFE+        LPK S+DTG GLER+A+VLQ K +NYD
Sbjct: 185 RPEHVNGPGDTTIEIWNLVFMQFERFADGTLKPLPKPSVDTGAGLERLASVLQGKKSNYD 244

Query: 246 IDLFKHLIQ--ASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
            DL   +++  A+       Y+  + V+ R+I DH R+++F IADGI P N GR YVLR+
Sbjct: 245 TDLIFPIVEHIAARAGKPYHYDSPDGVSMRIIADHARATAFSIADGIYPGNTGRNYVLRK 304

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPA-LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           IMRRA+ + R LG  E L +H + A +   M +A+PEL     +I   + +E++ F  TL
Sbjct: 305 IMRRAIWHGRRLG-IENLFLHDITAFVVAHMAAAFPELQTQAEVITRVVTTEEKLFSATL 363

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
             G   L+       +  +++G  AF LY T+GLPLD++  I   RGL  +D   F  AL
Sbjct: 364 AAGRKRLEEAFRR-AEHGVVSGADAFDLYQTYGLPLDLIAYIAEQRGLR-VDEAGFEAAL 421

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA--TQFIGYDLLRGSKFMKEDRKVLCQKP 480
            E+R RAR    G   GT + +  + +       T F GYD L                 
Sbjct: 422 TEERIRARESWKG---GTAKAVAPAYQAALDGRPTIFRGYDHLSLPDLR----------- 467

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V+A+++QGE+VE   +G+  EV+ D+TPFYAEAGGQ+GDTG    + + 
Sbjct: 468 -----------VRALIRQGELVEVLRAGEDGEVILDETPFYAEAGGQVGDTGLLENEAVT 516

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++TD      G+ VH   V RG +RT   +  T+D   RR+  +NHSATHLLH AL  +
Sbjct: 517 MRVTDTVAPVTGLIVHCVKVLRGAVRTHDRVTATVDADRRRRTMLNHSATHLLHAALREV 576

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV Q GS + PD LRFD TH   +++ E+  +E  VN  I +N P+  R M  + AI
Sbjct: 577 LGAHVKQAGSEVAPDKLRFDFTHYAALSADEIAEVERLVNAQIRRNAPLAKREMPLDAAI 636

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA AL G KY D VRVV V        S  LCGGTHV++TG+I L  I+SESSI AG+
Sbjct: 637 AAGAIALFGEKYGDVVRVVEVPG-----FSIELCGGTHVTATGDIGLFKIISESSIAAGV 691

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778
           RRI A+TG+ A       +  L +LA+  ++      G V EI  +  KLQ  L  A+R+
Sbjct: 692 RRIIAVTGEAAFERFQADEAILSNLAATFRLG-----GEVSEIPAQVEKLQASLRQAERE 746

Query: 779 LQLNVEDLSCHK----------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           ++     L+  +          I DV  ++  ++E+D   ++ + + L  K+   +++ V
Sbjct: 747 IESLRLKLAQQRAETALAEARTIGDVRVLALEVTELDKSGVRQLAEYLLGKLGQAVVV-V 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+  E+K S+ + V + L +R  A  L R  A ++ GG GGGR   A++GG +  +  +A
Sbjct: 806 GLRSEEKVSLAVRVADPLTNRLQANRLVRELAAMV-GGSGGGRADYAEAGGKDPARLPEA 864

Query: 889 IAGVASFLK 897
           +    + ++
Sbjct: 865 LHATPAIVE 873


>gi|284097293|ref|ZP_06385431.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3]
 gi|283831199|gb|EFC35171.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3]
          Length = 734

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 341/760 (44%), Positives = 462/760 (60%), Gaps = 37/760 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   +R +FL+FF    H ++PS+SL+P  DPTL+FTN+GM  FK +F G+E+  Y    
Sbjct: 4   NAHELRQSFLDFFHAADHAVVPSASLLPQADPTLLFTNAGMNQFKRVFLGEEQRSYSRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ A+   WD LTK   L  
Sbjct: 64  SVQRCMRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKKDAVHYGWDYLTKTLGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++TV+ +D+EAF+LW+   G+ A +I+R+   DNFW M ETGPCGPCSEI  DQG  
Sbjct: 124 DQLWVTVFQDDDEAFELWENSVGVPAARIVRLGYKDNFWQMGETGPCGPCSEIHIDQGAA 183

Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G    +   + +RY+EIWNLVFMQF++  +     LPK SIDTGMGLER+A V+Q  
Sbjct: 184 LGCGRASCAVGCDCDRYLEIWNLVFMQFDRDAEGNLHPLPKPSIDTGMGLERLAAVVQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            +NY  DLF  L+ A    TG  Y  +   +   RVI DHLR+ +F+I DGILP+NEGRG
Sbjct: 244 DSNYATDLFMPLLSAIAVRTGCGYGKDEASDRSMRVIADHLRAITFMIVDGILPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + RLLG TEP +  L   + TEM  AYPEL QA     + +  E+ERF
Sbjct: 304 YVLRRILRRASRHGRLLGVTEPFLYELTGTVATEMEGAYPELAQAGDTCRKVVEGEEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD+GL +L+ +++   +   L+G+  FKLYDT+G PLD++++    +GL   D+  F
Sbjct: 364 IGTLDQGLPILNRMVAE-AEAGSLDGESVFKLYDTYGFPLDLIEEAAREQGLVA-DLEGF 421

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            +ALE QR RAR  ++ +     EK + + L ++   T+F+GY  L+             
Sbjct: 422 QRALEAQRDRARKSAVFVAE--QEKPFITELTQRLRPTEFLGYQALQS------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S+V+A+++   + +E V G  VE+V D TPFY E GGQ+GD G   G 
Sbjct: 468 -----------ESVVQAMLKGDALADEVVEGDDVELVLDATPFYPEGGGQVGDQGTLTGR 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R+QI +  K +  + +H   V  G +RT   L  T+D   R   + NH+ATHLLH AL
Sbjct: 517 EGRIQIRETTKVSGKLLLHKGTVVAGRVRTGEPLAATVDSVTRHGAARNHTATHLLHAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q GS + P+ LRFD ++ KP+ + +L+ IE  VN  +  N  V T +M  +
Sbjct: 577 REVLGPQVKQYGSLVAPNRLRFDFSYFKPLRTRDLEEIEAMVNFHVLGNTFVRTDVMGIQ 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +AI +GA A  G KY +RVRVV V     G  S  LCGGTH   TGEI    I SE  I 
Sbjct: 637 EAIHAGALAFFGDKYGERVRVVGV-----GEFSKELCGGTHCQHTGEIGSFRITSEGGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           +G+RRIEA+TG  A  H    +  ++ LA  LK S   VV
Sbjct: 692 SGVRRIEALTGTGALDHGKKLESDVRELAELLKSSPSEVV 731


>gi|206889357|ref|YP_002248379.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741295|gb|ACI20352.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 875

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 366/904 (40%), Positives = 550/904 (60%), Gaps = 44/904 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL++F   GHEL+ SS LIP +DP+L+FTN+GMV FK +F G+E+  Y   TT 
Sbjct: 4   SEIRKLFLDYFVSKGHELVKSSPLIPKDDPSLLFTNAGMVQFKRVFLGEEQRPYSRATTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKH+DL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L + +
Sbjct: 64  QKCIRAGGKHSDLENVGFTARHHTFFEMLGNFSFGDYFKRDAILFAWELLTEHFKLPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++++Y +D+EA ++W++  G+ +++I+R+   DNFW M +TGPCGPCSEI  DQGE   
Sbjct: 124 LWVSIYKDDDEAAEIWEEEIGIPSERIVRLGEKDNFWQMGDTGPCGPCSEIIIDQGEDFG 183

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  S   + +R++E+WNLVFMQ+ +  + +   LPK SIDTGMGLER+  V Q K  
Sbjct: 184 CGQPDCSVGCDCDRFLELWNLVFMQYNRDEEGKLTPLPKPSIDTGMGLERITAVKQGKRT 243

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DLF+ +I        +KY  +    ++ +VI DH+R+++FL+A+G++P+NEGRGYV
Sbjct: 244 NFDTDLFEPIISEICSTLNVKYGKDRKTDISIKVIADHIRAATFLVAEGLIPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + +LL Y +      +  +  ++G  YPE++  +  IE+ ++ E+ERF +
Sbjct: 304 LRRIIRRAGRHIKLLEYDKTAFYRFVEPVVYKLGEVYPEIVSERERIEKIIKIEEERFLR 363

Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           +L++   + D ++++L K +  ++ G   FKLYDT GLP D+++++     L  ID I F
Sbjct: 364 SLEKAQQIFDDIINNLKKTDSKLIPGHEIFKLYDTFGLPFDLIKEMAQDSELQ-IDEIGF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            Q L +QR RARA       G  E ++  L+ +    +FIGY     + +  E       
Sbjct: 423 QQELNKQRERARAAQKSEEVGIGE-VYKQLRPQSENLRFIGY-----TDYETE------- 469

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + + AIV+  E V E    ++ E+   +TPFYAE+GGQ+GDTG  I + 
Sbjct: 470 -----------TDIYAIVKNSERVNELNKDEEGEIFLFKTPFYAESGGQVGDTGMIISNS 518

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++ D  KK  G+  H   V  G ++    +   ID + R+ +  NH+ATHLLH AL 
Sbjct: 519 GKAEVYDT-KKISGLHCHKVRVIEGTIKEGDKVFAKIDLERRKAIKRNHTATHLLHAALR 577

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           T+LG HV Q GS + PD LRFD TH + +   EL+ IE  VN+ I +NLPV   I + ++
Sbjct: 578 TVLGEHVKQAGSLVAPDRLRFDFTHFEAVNDEELREIERIVNEKILENLPVKIEIKSLDE 637

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  G  AL   KY D VRVV +        S  LCGGTH  STGEI   YIVSE S+ +
Sbjct: 638 ALNEGVTALFEDKYEDTVRVVKIVG-----FSKELCGGTHCDSTGEIGSFYIVSEGSVAS 692

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGR-VEEIWEEYRKLQLIHAK 776
           GIRRIEA+TG  A  +     E+LK+++S LK ++    V R V E+ E+ ++++++  K
Sbjct: 693 GIRRIEAVTGIEAFKYSNINREQLKAISSILKSAEPVKAVERLVAELKEKQQEIEVLKNK 752

Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              Q N+E++     +I  V  ++  +  VD K L+++ D L++K+   II+L+    + 
Sbjct: 753 LISQ-NIEEIVKQAKEIDGVKALAVKLDGVDLKSLRTLSDKLKEKLHPAIILLIS-KADG 810

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +  +L+ VT+D+ ++++A  L R   + + GG GGGR   AQ G P+G   ++      S
Sbjct: 811 QGILLLSVTKDITNKYDAGKLMRNIVQAV-GGKGGGRQETAQGGCPDGESLEKVSEIFYS 869

Query: 895 FLKK 898
            ++K
Sbjct: 870 LIEK 873


>gi|42522107|ref|NP_967487.1| hypothetical protein Bd0501 [Bdellovibrio bacteriovorus HD100]
 gi|48428503|sp|P61698|SYA_BDEBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39574638|emb|CAE78480.1| alaS [Bdellovibrio bacteriovorus HD100]
          Length = 907

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 380/938 (40%), Positives = 538/938 (57%), Gaps = 82/938 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  F+++F+KNGH+++PSSSLIP NDPTL+F N+GM  FKN F G EK  Y    T 
Sbjct: 4   SEIRNAFIKYFEKNGHKVVPSSSLIPENDPTLLFANAGMNQFKNTFLGLEKRDYSRAVTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI  AW+ LTKE  + + +
Sbjct: 64  QKCVRAGGKHNDLENVGFTARHHTFFEMVGNFSFGDYFKKDAIHFAWEFLTKELAIPKEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TV+  D+EA  +W    G+  ++I R    DNFW M +TGPCGPC+EIF+D G    
Sbjct: 124 LYVTVHISDDEAADIWHNQEGVPRERIFRF-DKDNFWKMGDTGPCGPCTEIFYDHGPKAG 182

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            I     G     +R++EIWNLVFMQ+ +        LPK S+DTG GLERM+  +Q   
Sbjct: 183 TISDPFKGIEAGEDRFVEIWNLVFMQYFENPPGTLTPLPKPSVDTGGGLERMSAAMQGVF 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV------------NHRVIVDHLRSSSFLIADG 289
           NNYD DLF+ +IQ + ++  ++Y  +  V              RV+ DH RS+SFLIADG
Sbjct: 243 NNYDTDLFQPMIQLACKIGNIEYISDKEVLAKNPAAAEVTSALRVLADHCRSTSFLIADG 302

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRRIMRRA+ Y R L   +  +  +  AL   MGS YPEL   +  I  
Sbjct: 303 ALPSNEGRGYVLRRIMRRAIRYGRKLSADKSFLPGMAEALIESMGSVYPELKTRRDHILN 362

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
           T+R E++RF  TLD+G  +L+  L       I  L+G+V F++YDT+G P D+ + I   
Sbjct: 363 TIRDEEDRFIATLDKGTAILEDELKKAKSKGIKELSGEVVFRMYDTYGFPADLTRVIANE 422

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY----GATQFIGYDLL 463
           +G+  ++  +F + +E+ R++++A   G   G  E       + Y     +  F+GY+  
Sbjct: 423 QGIE-VNEAAFEKEMEDNRAKSKASWKGKSMGADEAHMIKFAKDYLQSGKSVTFLGYEGT 481

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G      D KV+       L+NG          Q E V+E  +G    ++ + T FY E
Sbjct: 482 IG------DGKVMG------LSNG----------QAE-VQELKTGDTGLMILNATTFYGE 518

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ GD G  + D  R ++ +   K + I +HH  +E G  +   ++V  +D   RR  
Sbjct: 519 GGGQSGDVGYIMHDTNRARVINTT-KIDDIVLHHVEIEHGSFKVGTAVVTGVDPVERRNT 577

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLLH AL  +LG+HV+Q GS +     RFD TH+KP++S E+K IED VN+ I
Sbjct: 578 AANHSATHLLHAALRKVLGTHVTQAGSLVDSQKTRFDFTHNKPVSSEEIKKIEDLVNEQI 637

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A+  PV T +M+ + A+  GA AL G KY   VRV+++     G  S  LCGGTHV +T 
Sbjct: 638 ARCNPVQTEMMSHKAALEKGAMALFGEKYASDVRVLTM-----GDFSCELCGGTHVKNTS 692

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQ------ 753
           EI L  IVSE+ + +G+RRIEAIT   A  ++M      D+ L + A F K         
Sbjct: 693 EIRLFKIVSEAGVSSGVRRIEAITADNALQYMMSAVTHLDDALAA-AGFQKSPHYIKHLE 751

Query: 754 -----GNVVGRVEEIWEEYRKLQLIHAKRKL---QLNVEDLSCHKI-------ADVNFMS 798
                  +  RVE + ++ ++L+     +KL   Q+NV+DL+ + +       A    + 
Sbjct: 752 TTGETATLANRVESLKDQVKQLE--KEMKKLQGGQVNVDDLAANALTFKTKAGASAKLVL 809

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             +   D + L  V D L+ KIQSGI+++VG   +    +++ V++++     A DL + 
Sbjct: 810 ADVPLDDRQVLAEVTDHLKNKIQSGIVVVVG-QGDGSHPIIVSVSKEISGETKAGDLLKE 868

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A V+ GG GGGRP  AQ   PN  + ++A + V S L
Sbjct: 869 VAGVM-GGKGGGRPDFAQGAAPNRAQLNEAFSKVKSML 905


>gi|124267510|ref|YP_001021514.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|205830143|sp|A2SI90|SYA_METPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124260285|gb|ABM95279.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 875

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 375/912 (41%), Positives = 526/912 (57%), Gaps = 60/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FL+FF+  GH+++ SS ++P +DPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 2   KASEIRSAFLKFFESKGHQIVASSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L +
Sbjct: 62  TAQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIAYAWELLTEVFKLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA+++W K  G+ A++I+RI  N       DNFW M +TGPCGPC+EI
Sbjct: 122 DKLWVTVYAEDDEAYEIWNKQVGVPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCTEI 181

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+ 
Sbjct: 182 FYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHKLPKPSVDTGMGLERIT 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGIL 291
            VLQ   +NY+IDLF  L+ A++Q       G++  +    +VI DH+R+ SF I DG++
Sbjct: 242 AVLQHVHSNYEIDLFVALLAAAKQAVDAAGAGDSDKDSPSLKVIADHIRACSFTIVDGVI 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRI RR + +   LG  +P    L+  L  +MG AYPEL +A+  + E L
Sbjct: 302 PGNEGRGYVLRRIARRGIRHGYKLGARKPFFHTLVAELVRQMGEAYPELARAEARVTEVL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ERF +T+  G+ +L+  L+  G  + L+G+ AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 362 KQEEERFFQTIANGMEILESALA--GGAKTLDGETAFKLHDTYGFPLDLTADVCRERGVT 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFM 469
            +D   F+ A++ QR +ARA           K+   L+    AT F GY+ L   GSK  
Sbjct: 420 -VDQAGFDAAMKRQREQARA-------AGKFKMAAGLEYAGAATTFHGYEHLVHEGSK-- 469

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                                 V A+   G  V  A +G    +V D TPFYAE+GGQ+G
Sbjct: 470 ----------------------VTAVYVDGSAVPSAKAGDDAVIVLDHTPFYAESGGQVG 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G       R+ + D QK    +F HH  V  G +R    L   +D + R +   NHS 
Sbjct: 508 DGGELRNGTSRVIVEDTQKIQADVFGHHGRVVEGEIRVGDVLNARVDGEQRARTVRNHSV 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG HV Q GS +  +  RFD  H+ P++ A++  +E  VN  I  N P 
Sbjct: 568 THLMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPMSDAQIAKVEAIVNAEILANAPT 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             R++  E+A   GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  
Sbjct: 628 QARVLPMEEAQKLGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVQRTGDIGLFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +V+ES + AGIRR+EAITG  A +++   +  +  LA  LK +   V GRV  + E+ R 
Sbjct: 682 VVAESGVAAGIRRVEAITGDNALAYVQQLEGTVAGLAGALKAAPAEVPGRVAAVLEQLRT 741

Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGI 824
           L  +L   K KL  +  D    +  DV  +  + + +   D+K L+  +D L+ K++S  
Sbjct: 742 LEKELAALKGKLASSQGDGLLAQAVDVKGLKVLAARLEGADAKALRDTLDQLKNKLKSAA 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L  + +  K  +   VT D   R  A +L    A+ + GG GGG+P +A +GG +   
Sbjct: 802 IVLA-VVEGGKVQLAAGVTADATARVKAGELVNFVAQQV-GGKGGGKPDLAMAGGTDPAG 859

Query: 885 ADQAIAGVASFL 896
              A+A VA ++
Sbjct: 860 LGAALASVAGWV 871


>gi|169831075|ref|YP_001717057.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|205830046|sp|B1I370|SYA_DESAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169637919|gb|ACA59425.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 880

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 367/908 (40%), Positives = 549/908 (60%), Gaps = 66/908 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S IR  +LEFF   GH ++PS+SLIP NDPTL++T++GMVPFK  FTG   P ++ V 
Sbjct: 2   NSSEIRKRYLEFFAARGHRVIPSASLIPGNDPTLLWTSAGMVPFKPYFTGVATPEFRRVV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D++ VGRT RHHTFFEMLGNFSFG YFKERAI  AW+ +T++  L  
Sbjct: 62  TCQKCLRT----PDIEMVGRTARHHTFFEMLGNFSFGDYFKERAIPWAWEFVTRDLGLAP 117

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             L+I+VY +D EAF  W+ + G+ A++I+R+  + NFW +   GPCGPCSE+++D+G  
Sbjct: 118 EHLWISVYLDDNEAFDHWRGL-GVPAERIVRLGRDTNFWEIG-VGPCGPCSEVYYDRGPA 175

Query: 181 ------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                  C PG       + +R++EIWNLVF+Q+ +    +   L    IDTGMGLER+A
Sbjct: 176 YGCESASCGPGC------DCDRWLEIWNLVFIQYFRNEAGDYSPLESPGIDTGMGLERVA 229

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGIL 291
           +VLQ    N+D DLF+ LI  +  V G++Y G++       +VI DH R+ +F IADG+L
Sbjct: 230 SVLQGVNTNFDTDLFRGLIDYTAGVLGVRY-GDDPAGDAALKVIADHGRAITFAIADGVL 288

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYV+RR++RRA+  A LLG  +P +  +  A+  +M  AYPEL  A+  + + +
Sbjct: 289 PSNEGRGYVIRRLLRRAVRKALLLGREKPFLEGVALAVIEQMAGAYPELETARDSVRKVV 348

Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R E+ERF +TL +G  ++  +++     K   L G  AF+LYDT+G PL++ ++I   +G
Sbjct: 349 RFEEERFRQTLTQGNEIIGRLIAEARAEKRSTLEGAAAFQLYDTYGFPLELTREICAEQG 408

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKF 468
           LA +D   F  AL+ Q+ +AR+           + +F +L+++ G T+F+GY+ L     
Sbjct: 409 LA-VDEAGFEAALKAQQQKARSSRRETRYVEERETFFRNLRDEIGLTRFVGYEQLEAD-- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V+A+++ G+ V  A SG++V +V D TP YAE+GGQ+
Sbjct: 466 ---------------------AGVRALIRDGQRVPAAGSGEQVSLVVDTTPCYAESGGQV 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G   G+ +R +ITD     EG+ VH  +VE G+L     + + +D   RR++  NH+
Sbjct: 505 GDHGLIEGENVRGRITDTFAPVEGLHVHEVVVEAGVLEEGARIRILVDGSRRRKICRNHT 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH  L  +LG+HV+Q GS + P+ LRFD TH +P++ AEL  +E  +N+I+  NL 
Sbjct: 565 ATHLLHRTLKAVLGTHVNQAGSLVAPERLRFDFTHIQPLSEAELAEVESRINEIVLSNLR 624

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V +   + + A   GA AL G KY D VRVV ++    GV S  LCGGTHV ST EI  +
Sbjct: 625 VESFQTSFDRARELGAVALFGEKYGDLVRVVQID----GV-SMELCGGTHVLSTAEIGPV 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I +ESS+ AG+RR+EA+TG  A + L  ++E+L  +A  ++V    +V  VE + +  +
Sbjct: 680 KITAESSVGAGLRRLEAVTGMEALAFLNSRNEQLHRIAQAVRVPVSELVVHVERLLDHQK 739

Query: 769 KLQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KLQ  + + + +L V ++       S H+   V  ++  +   D  EL+S++D L++++ 
Sbjct: 740 KLQRENEQLQDRLQVYEVKELLDRASTHE--GVRILATSVRARDMAELRSMLDLLRERLG 797

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +I+L G +   K S++  V+ DL+ R          A  + GGGGGGRP MAQ+GG N
Sbjct: 798 SAVIVL-GSAVNGKVSLVASVSRDLVARGLHAGAIIKEAAAVAGGGGGGRPEMAQAGGKN 856

Query: 882 GNKADQAI 889
             K  +A+
Sbjct: 857 PEKLTEAL 864


>gi|207744018|ref|YP_002260410.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206595420|emb|CAQ62347.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
          Length = 825

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 345/784 (44%), Positives = 473/784 (60%), Gaps = 54/784 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y    +
Sbjct: 16  ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRAAS 75

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L   
Sbjct: 76  VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 135

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176
           +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSEIF
Sbjct: 136 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 195

Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230
           +D G  I GG PGS E +G+RYIEIWN VFMQF++Q      +     LP   +DTGMG+
Sbjct: 196 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 255

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN +  RVI DH+R+ SFLI DG+
Sbjct: 256 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 313

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + + 
Sbjct: 314 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 373

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+ C  
Sbjct: 374 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 432

Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
               +D  +F+ A+  QR +ARA     L +GT       L      T F GYD L    
Sbjct: 433 NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT-------LDYTGDKTTFHGYDQL---- 481

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            ++E                 ++ V A+   G  V+    GQ   VV D TPFYAE+GGQ
Sbjct: 482 -VRE-----------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 523

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   NH
Sbjct: 524 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 583

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N 
Sbjct: 584 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 643

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L
Sbjct: 644 ATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 697

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++ 
Sbjct: 698 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQV 757

Query: 768 RKLQ 771
           + L+
Sbjct: 758 KTLE 761


>gi|312880061|ref|ZP_07739861.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783352|gb|EFQ23750.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 880

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 354/891 (39%), Positives = 521/891 (58%), Gaps = 54/891 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL +F++ G    PS SL+P +DPTL+FT +GMVPFK  F G + P     TT
Sbjct: 6   AAKLREQFLSYFEEKGSRRYPSFSLVP-DDPTLLFTIAGMVPFKPYFLGLKTPEVTRATT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR     ND+DNVGRT RHHTFFEMLGNFSFG YFK   I  AW  LT+   LD  
Sbjct: 65  AQKCVRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWTFLTERVGLDPN 120

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           R+Y TVY +D+EA  +W+   GL+AD++IR+   DNFW+    GPCGPCSE+ +DQG   
Sbjct: 121 RMYATVYRDDDEAADIWRNSVGLAADRVIRLGEEDNFWAAGPVGPCGPCSELLYDQGPAF 180

Query: 184 ----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               P   PG S   +RY+EIWNLVFMQF +        LPK +IDTGMGLER+++V+Q+
Sbjct: 181 SCGSPDCAPGCS--CDRYLEIWNLVFMQFNRDEAGVLTPLPKKNIDTGMGLERLSSVVQQ 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
             ++++ DLF+ L+  +  + G+ Y    G+++   RVI DHLR+++F+IADGILP+NEG
Sbjct: 239 VKSDFETDLFRPLVDKACSLAGVSYGAGPGSDLAV-RVIADHLRATAFMIADGILPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
            GYVLRR++RRA+ + RLL   EP ++ LLP +   +   Y EL++ +  I + +  E+ 
Sbjct: 298 TGYVLRRLLRRAVRFGRLLDLREPFLLELLPQVEATLADPYQELLRYRSTIAQVVDLEER 357

Query: 357 RFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           RFG+TL++G  LL+   G     G  E L+G+VAF+LYDT+G P+++ +++    GL+ +
Sbjct: 358 RFGRTLEQGSDLLEQEIGCTKRSGGKE-LSGEVAFELYDTYGFPVELTEEMCSEAGLS-V 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+E Q+ RARA S    +      +  L ++ G T F+GY+       M+E R
Sbjct: 416 DQKGFAQAMERQKERARASSKQTCATMGSNAYTELADRQGPTVFLGYE-------MEEAR 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+++ G +++ A  G+  EVV D+TPFYAE GGQ+GD G 
Sbjct: 469 ----------------GTVLALLRDGVLLDRAEEGETAEVVLDRTPFYAERGGQVGDQGT 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G+  ++ D       +  H   + +G+L    +L   +D   R  +  +H+ THLL
Sbjct: 513 LSGEGLEAEVEDTVHPCGDLVAHRVRIRKGVLLPGATLEARVDGARRGDIRRHHTTTHLL 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL+ +LG HV Q GS ++P+GLRFD  H  P+T  +++ +ED VN+ + +NLPV TR 
Sbjct: 573 HEALTQVLGDHVRQAGSLVSPEGLRFDYNHFAPLTPEQIQEVEDRVNEQVLKNLPVTTRE 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E A A GA AL   KY +RVRVVSVE      +S+ LCGGTHV +TGEI L+ +  +
Sbjct: 633 TDLETAKALGAKALFEEKYGERVRVVSVEG-----YSTELCGGTHVCATGEIGLVKVHKD 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRI+A +G+ +          L+ + S L V    +  +   + EE++ L+  
Sbjct: 688 EGIGAGLRRIQATSGRASLRWSQEVSTVLRDVTSLLTVDPDALCEKTASLLEEHKALERK 747

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +  LQ  +  L        ++ DV  +     ++D+  L+ + D ++ +  S + +L 
Sbjct: 748 WRQALLQTELMRLDAVVMGRKRVGDVEVVISFYEDLDTDLLRQIGDQVKGRFPSSVSVLA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             + EK   V++   E +    +A  LA+ S   L G  GGG+P MAQ GG
Sbjct: 808 TKNAEKFLVVIMATDEAVAKGVHAGKLAK-SLGALLGCNGGGKPQMAQVGG 857


>gi|255003991|ref|ZP_05278792.1| alanyl-tRNA synthetase [Anaplasma marginale str. Virginia]
          Length = 879

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 352/768 (45%), Positives = 459/768 (59%), Gaps = 49/768 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT           
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L +
Sbjct: 65  ASQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLSK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGEH 184

Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG PGS + +G R+ E+WNLVFMQF +    E   LP   IDTGMGLE  A V+Q   
Sbjct: 185 VQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLE-TAAVVQGVC 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYD DLFK +I+ S+ V G     NN + HRVI DH+R+++FLI++G+ P NEGR YVL
Sbjct: 244 DNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYVL 300

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE E
Sbjct: 301 RRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEGE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D  
Sbjct: 361 GFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN+ + EQ+  A +   GL      ++W  L+ ++  T+F+GYD               
Sbjct: 420 GFNKGMGEQKGLA-STGWGLVKMLPHRLWEELQAQHKNTRFVGYD--------------C 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           C            + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   G
Sbjct: 465 CS---------TKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSITG 515

Query: 537 -------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
                   G  +      +KA  + +H   +  G+     ++   ID   R +L  NHSA
Sbjct: 516 VSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHSA 575

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N PV
Sbjct: 576 THILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKPV 635

Query: 650 VTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +T   + E A+  GA AL G KY++  VRVVS+        S  LCGGTHV  TG+I   
Sbjct: 636 LTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGAF 689

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V
Sbjct: 690 KIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 737


>gi|171058684|ref|YP_001791033.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|205830133|sp|B1Y1G9|SYA_LEPCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170776129|gb|ACB34268.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 875

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 371/910 (40%), Positives = 530/910 (58%), Gaps = 60/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+TFL+FF+  GH+++ SS ++P +DPTL+FTN+GM  FK++F G +K  Y   TT 
Sbjct: 4   SEIRSTFLKFFESKGHQIVGSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L + +
Sbjct: 64  QKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTEHFKLPKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177
           L++TVY ED+EA+++W K+ G+ A++I+RI  N       DNFW M +TGPCGPC+EIFF
Sbjct: 124 LWVTVYSEDDEAYEIWNKVVGVPAERIVRIGDNKGARYMSDNFWMMGDTGPCGPCTEIFF 183

Query: 178 DQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D       G      E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+  V
Sbjct: 184 DHGEGIPGGPPGSPDEDGDRYIEIWNNVFMQFNRTEDGVMHKLPKPSVDTGMGLERITAV 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----RVIVDHLRSSSFLIADGIL 291
           LQ   +NY+IDLF  +   +     ++  G   V+      +VI DH+R+ SF I DG++
Sbjct: 244 LQHVHSNYEIDLF--VALLAAAKAAVESAGGKDVDPESPSLKVIADHIRACSFTIVDGVI 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRI RRA+ +   LG   P    ++  L  +MG AYPEL  A+  + E L
Sbjct: 302 PGNEGRGYVLRRIARRAIRHGYKLGARTPFFHKIVAELVAQMGEAYPELRAAQARVTEVL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ERF +T+  G+ +L+  L+  G  + ++G+ AFKL+DT+G P+D+  D+   RG+ 
Sbjct: 362 KQEEERFFQTIQHGMEILEHALA--GGTKQVDGETAFKLHDTYGFPVDLTADVCRERGVT 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+E QRS+ARA           K+   L      T F GY+ L        
Sbjct: 420 -VDQAGFDAAMEHQRSQARA-------AGKFKMAAGLAYSGAPTAFHGYEHL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
               +C+          +S V AI   G  V+ A +G    +V D TPFYAE+GGQ GD+
Sbjct: 464 ----VCE----------TSKVVAIYVDGTPVDAAQAGDDAAIVLDHTPFYAESGGQAGDS 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R+ + D  K    +F HH  +  G ++   S V  +D + R +   NHSATH
Sbjct: 510 GELRNGSTRVVVADTFKIQADVFGHHGRIVEGSVKVGDSFVAKVDAELRAKTVRNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P++ A+++ +E  VN  I  N     
Sbjct: 570 LMHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVSDAQIRQVEAIVNAEILANAAASA 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M  +DA  SGA  L G KY + VRV+S+        S  LCGGTHV +TG+I L  +V
Sbjct: 630 QVMALDDAQKSGAMMLFGEKYGETVRVLSIG------SSKELCGGTHVKATGDIGLFKVV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           +ES + AGIRRIEAITG  A ++L   +  +  +AS LK +   V  R+  + ++ R L 
Sbjct: 684 AESGVAAGIRRIEAITGDNALAYLQSLESTVNGVASALKSAVPEVPARISGLQDQVRALE 743

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L   K KL  +  D    +  D+N    ++ ++   D+  L++ MD L+ K+++  I+
Sbjct: 744 KELAALKGKLASSQGDSLLAQTVDINGLKVLAVVLEGADAATLRTTMDQLKNKLKTAAIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K  +   VT D   +  A +L    A+ + GG GGG+P MA +GG + +K  
Sbjct: 804 LAAVDG-GKVQLAAGVTADSTAKVKAGELVNFVAQQV-GGKGGGKPDMAMAGGTDPSKLA 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVPGWV 871


>gi|192362500|ref|YP_001981850.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190688665|gb|ACE86343.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 875

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 388/909 (42%), Positives = 549/909 (60%), Gaps = 59/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F+  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G E   Y    + 
Sbjct: 4   AEIRDAFLKYFESKGHTVVASSSLVPGNDPTLLFTNAGMNQFKDVFLGGETRSYTRAASS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT +   ++  
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTSKAWLNIPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W    G+ A++IIRI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYASDDEAYAIWHNEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
            V+Q   +NY+IDLF+HL+ A+ + TG    E  ++   RVI DH+RS SFL++DG+LP+
Sbjct: 244 AVMQHVHSNYEIDLFQHLLSAAVEATGTSDLESKSL---RVIADHIRSCSFLVSDGVLPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +P    L+ AL   MG AYPEL + +  IE  L  
Sbjct: 301 NEGRGYVLRRIIRRAIRHGNKLGQKQPFFHKLVKALAEVMGDAYPELHKNRAHIERVLLQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD+G+ +L+  L+ L   EI  G + F LYDT+G P+D+  DI   RGL  I
Sbjct: 361 EEEQFEKTLDKGIAVLEDALAKLSGTEI-PGKLVFTLYDTYGFPVDLTNDIARERGLT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   ++ A+ EQR+RARA      +GT +  + ++     AT+F+GY      + + E  
Sbjct: 419 DQDGYDAAMAEQRARARA------AGTFKVDYSAVGLDLPATEFLGY------RQLAEQG 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                 A+++  + V+  V G    VV D+TPFYAE+GGQ GD G 
Sbjct: 467 KVV-----------------ALIKDSKKVDRLVEGDDGVVVLDRTPFYAESGGQAGDCGY 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G RL++ D QK+A    +H   V +G +         +D   R+  ++NHSATHL+
Sbjct: 510 LEQGGNRLEVRDCQKQANA-HLHLVHVLQGAISVGDVFGAKVDANVRQATALNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + +T  +LK+IE  VND +  N  V T +
Sbjct: 569 HAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVTPEQLKTIETLVNDQVRANSAVATEL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G KY D VRV+++    G   S  LCGGTHV+ TG+I +  I SE
Sbjct: 629 CDMDTAKAKGAMALFGEKYGDTVRVLTM----GDGFSVELCGGTHVARTGDIGVFRITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKL-KSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           S + AGIRRIEAITG +A + L  Q E L  + A  +K ++ N++ +++ +  + RKL+ 
Sbjct: 685 SGVAAGIRRIEAITGTKALA-LFDQVESLVDAAARSIKANRDNLLEKLDALVAQNRKLEK 743

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            L   K +L          +  DVN    ++  +   D++ L+  +D  + K+ S +++L
Sbjct: 744 DLAGLKTRLATAGSGDVLSQAQDVNGIKVLALNLEGADARSLRDTVDQFKNKLGSAVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K S++  VT+D+  +  A DL    A  + GG GGGRP MAQ GG +  +   
Sbjct: 804 AAVEND-KVSLVAGVTQDITAKVKAGDLMAHVAGQI-GGKGGGRPDMAQGGGTDVARLAD 861

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 862 ALASVLPWV 870


>gi|71891957|ref|YP_277687.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|83305841|sp|Q493M6|SYA_BLOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71796063|gb|AAZ40814.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 879

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 370/899 (41%), Positives = 538/899 (59%), Gaps = 62/899 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N+  IR  FL FF+K GH+++ SS+LIP +D TL+FTNSGM  FKNIF G +KP+++ V 
Sbjct: 4   NIDDIRQEFLNFFKKKGHKIISSSTLIPNSDQTLLFTNSGMNQFKNIFLGIDKPLFKRVA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T Q+CVRAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK  AIQ AW+LLT    F+L
Sbjct: 64  TAQRCVRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKNEAIQFAWELLTDVNWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TV++ D E++ +W     +  + I++I +N       DNFW M   GPCGPCS
Sbjct: 124 SKNKLWVTVHNCDGESYDIWSNQIDIPNEHIVKIGSNTNDFCDSDNFWQMGNIGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D+G+   GG PGS EE GERY+EIWNLVF+QF++Q       LP +S+DTGMGLER
Sbjct: 184 EIFYDRGDRFQGGPPGSLEEFGERYVEIWNLVFIQFDRQENGRLLSLPMLSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR---VIVDHLRSSSFLIADG 289
           + ++LQ   +N+ ID+FK LI +  ++  +    N+I  +R   VI DH+R+ SFLI DG
Sbjct: 244 ITSILQGVNSNFSIDVFKKLISSISRIMKI----NDIYINRSVYVIADHIRACSFLIQDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LPANEGRGYVLRRI+RRA+ + + LG  +     L+  L   M      L + K  I E
Sbjct: 300 VLPANEGRGYVLRRIIRRAILHGKKLGVNDIFFYKLVSPLIKYMQHIADILHEKKDFIAE 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L SE++ F  TL RGL LL+  L  L K   LNG++AF LYDT+G P ++ QD+   RG
Sbjct: 360 ILLSEEKLFQDTLKRGLELLEKQLIRL-KGNCLNGEIAFNLYDTYGFPFELTQDVCLKRG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F+QA+  Q+   +   L     + EK+  SL     ++ F+GYD        
Sbjct: 419 IH-VDQEGFDQAMLTQKKYTK--ELNKFDISYEKL--SLCNV--SSIFVGYD-------- 463

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
               K++C+           S V A+ Q  + + +  + ++  V+ + TPFY E+GGQ+G
Sbjct: 464 ----KLICK-----------SRVMALFQNNKSINKIYTKEEGIVILNNTPFYGESGGQIG 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G         Q+++ +K  + I  H  IV  G +     +V  +D   R+ +S+NHSA
Sbjct: 509 DCGQLNTISGFFQVSNTKKYGQTI-GHLGIVNSGTISVGEEIVAQVDQHKRKCISLNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  ALS +LGSHV+Q GS +    LRFD  H   +T+ ++ ++E+ VN+ I +N P+
Sbjct: 568 THLLRAALSQVLGSHVTQKGSLVNDRYLRFDFYHHATMTTTQMNTVENIVNEQIWKNAPI 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +M  E A  SGA  L+  +Y+ +VRV+ +     G  S+ LCGGTH   TGEI +  
Sbjct: 628 TVDVMPIELARNSGAVILINKQYDKKVRVLKI-----GNFSTELCGGTHAEHTGEIGVFM 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I  E SI AGIRR+EA+T   A S +      LK++    +    N++ ++ E    Y+K
Sbjct: 683 ITKECSIAAGIRRVEAVTNNVALSAIHQYKMLLKNIFQSTQSDDKNILSKIHEFKCRYQK 742

Query: 770 LQL-IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+  I   R  Q+  + LS     + I DV  +   +  + SK L ++ D ++ +++SG+
Sbjct: 743 LEKEIDTLRNQQIIQQSLSFIKDVYYIKDVRILVKQVVNMTSKTLFNMTDCIKHQLKSGV 802

Query: 825 IMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           I+L+ ++  KK ++++ VT+DL+  +R NA+ L     K+L GG GGGRP  AQ+G  N
Sbjct: 803 IVLINLNTNKKINLVVAVTKDLIERNRINALSLVHYIIKIL-GGKGGGRPDFAQAGINN 860


>gi|108808831|ref|YP_652747.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|122382877|sp|Q1C420|SYA_YERPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108780744|gb|ABG14802.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua]
          Length = 738

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 340/722 (47%), Positives = 460/722 (63%), Gaps = 49/722 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPCS
Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A   VTG     +  +  RVI DH+RS +FLI+DG++P
Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++        
Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQ-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD G
Sbjct: 466 ---------------QHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATHL
Sbjct: 511 ELKNATATFSVTDTQKYGQAI-GHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T 
Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I++
Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684

Query: 713 ES 714
           ES
Sbjct: 685 ES 686


>gi|206602304|gb|EDZ38785.1| Alanyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 891

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 376/916 (41%), Positives = 537/916 (58%), Gaps = 72/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   +R  FL +F  +GH+++PS+SLIP  DPTL+FTN+GMVPFK+IF G EK   +   
Sbjct: 2   NSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW  LTKE  +D+
Sbjct: 62  SIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMDR 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           R L++TVY ED+EA +LW++++ +  D+I+R+   DNFW M +TGPCGPCSEI  DQGE 
Sbjct: 122 RLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGER 181

Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P      + +RY+EIWNLVFMQ+++ ++     LP+ SIDTGMGLER++ V+Q+K
Sbjct: 182 FSCGSPDCKVGCDCDRYLEIWNLVFMQYDRNSEGVLSPLPRPSIDTGMGLERLSAVIQKK 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            +NY+ DLF  LI+  E  + + Y   EG+    +RV+ DHLRSS FL+ +GI P+NEGR
Sbjct: 242 DSNYETDLFMPLIRTIETYSRVPYGAGEGSLDHAYRVMADHLRSSVFLLHEGIAPSNEGR 301

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           G+VLRRI+RRA+ + R LG   P++  L  ++   M   YPEL  + L I++ LR E+ R
Sbjct: 302 GHVLRRIIRRALLFGRELGLPHPILPALADSVAEMMAKPYPELRTSLLRIQDVLRLEEGR 361

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL+ GL L+  +L  L K  +++  G++ F L+DTHG PLDI++D    +G+  +D 
Sbjct: 362 FHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQGIL-LDY 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + +EEQR R R+      +G  E    S      + +F GY+              
Sbjct: 421 KGFEEKMEEQRERGRSS----WTGKKEDFPLSSDRLKESVEFQGYE-------------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       +   V  +++  E V+E  +G+ V VV D+T FY E GGQ+GD G  I
Sbjct: 463 ---------KTSLQGTVLFLLKGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDLI 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G    +++   +K   G  V    V  G +    ++   +D + R+    +H+ATHLLH 
Sbjct: 514 GPFGYIRVRGAKKPYPGWIVLAGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLHA 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG  V Q GS + P+ LRFD T  +P++   L ++E  VN  I +N PV  R M 
Sbjct: 574 ALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDAREME 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +  A+  GA A    KY DRVRVV V        S  LCGGTHV STG+I  L I+ E+ 
Sbjct: 634 KSKALDMGALAFFDEKYGDRVRVVQVPGT-----SVELCGGTHVRSTGQIGSLLILQETG 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE---YRK-LQ 771
           + AGIRRIEA+ G  A    +   ++LK L   L+    ++  +   I  E   Y+K +Q
Sbjct: 689 VAAGIRRIEAVAGPLAYQKAVTWRQELKGLRELLEAGTSSLEEKTRTILRENAAYQKEIQ 748

Query: 772 LIHAK---------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            + ++         RK  L V+    H++A ++     +S  DS+EL++ MDA++ KI S
Sbjct: 749 SLKSRLFSLEEKHSRKEMLEVDG---HQLAVIH-----VSLEDSRELRARMDAIKSKIPS 800

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPN 881
           G I+L+G + +K A  L   + DL + F      + L+A+V  GG GGG+P  A+ GGP 
Sbjct: 801 GAILLIGETTDKLA-FLGWTSPDLGEAFPISQWVKTLAAEV--GGKGGGKPSWAEGGGPK 857

Query: 882 GNKADQAIAGVASFLK 897
            +        V SFL+
Sbjct: 858 PDD-------VGSFLQ 866


>gi|154250174|ref|YP_001410999.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|205830091|sp|A7HN59|SYA_FERNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154154110|gb|ABS61342.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 867

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 384/912 (42%), Positives = 555/912 (60%), Gaps = 76/912 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L FF+K GH+ LPS+SLIP +DP LMFT +GMVPFK IF G+  PVY  VTT QK
Sbjct: 9   IREAYLSFFEKKGHKRLPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRVTTCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +TK  ++ + +L+
Sbjct: 68  CVRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKQEAIEWAWEFVTKVLEMPEEKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIP- 184
           ++VY+ D+EA+++W+K+ G+   KI+R++  DNFW  A  TGPCGPCSEIF+D G  +P 
Sbjct: 124 VSVYEYDDEAYEIWRKL-GVPERKIVRMSKEDNFWGPAGPTGPCGPCSEIFYDTGVEVPV 182

Query: 185 --GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G  P  +    RYIEIWNLVF +F Q  +     LP+ +IDTG GLER++ ++Q    
Sbjct: 183 PEGQDPTPANTDGRYIEIWNLVFTEFYQDEEGNLHPLPRKNIDTGAGLERISAMMQGVYW 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DLFK +I++ E V  + Y+ + +  V+ RVI DH+RS +F+IADG+LP+NEGRGYV
Sbjct: 243 NFDTDLFKPIIESIENVLKVSYKSDKVKDVSIRVIADHVRSVTFMIADGVLPSNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ +  LLG  EP +  ++ ++  +MG  YPE+++ +  +E  ++SE+ +F  
Sbjct: 303 LRRVLRRALRHGVLLGAKEPFLYKIVDSVVQKMGKIYPEIVEKQSFVENIVKSEELKFIN 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            L RGL ++  +++  GK   ++ + AFKLYDT+G P+DI++DI    G   +D   F +
Sbjct: 363 NLSRGLEIVQKIVTTSGK---ISAEDAFKLYDTYGFPIDILRDIATENGYE-LDEKGFEK 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG----ATQFIGYDLLRGSKFMKEDRKVL 476
            LEEQR R+R        G  E   F+ K  Y      T F+GYD L             
Sbjct: 419 YLEEQRERSRK-----AQGEVE---FAQKTGYENLGIETVFVGYDTLVSE---------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       SS++K  V  GE VE+A     + E++ D TPFYAE GGQ+ DTG   
Sbjct: 461 ------------SSVLKIRV-NGEFVEKAEGNDLECELILDITPFYAEKGGQVADTGVIK 507

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ----NRRQLSINHSATH 591
                  +  V    EGI VH     RG L  ++S+   +  Q     R+    NH+ATH
Sbjct: 508 SQDGLFTVEYVYSPVEGIIVH-----RGKLNGKISVNEKVQSQVDEIKRKSTMRNHTATH 562

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LGSHV Q GS + P  LRFD TH + +T  E+  IE+ VN++I + +PVVT
Sbjct: 563 ILHSALRKVLGSHVRQAGSLVEPTRLRFDFTHYQALTKDEITKIENIVNEVILKAIPVVT 622

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + ++A+  GA AL   KY D VRVV V        S  LCGGTHV +TGEI L  IV
Sbjct: 623 EIKSYDEAVKEGAMALFEEKYGDFVRVVKV-----SDFSEELCGGTHVKNTGEIGLFKIV 677

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           SES++ AG+RRIEAITG  +  +L   +E  + L   L+  +  +V ++++I EE + L 
Sbjct: 678 SESAVSAGVRRIEAITGLNSLEYLRTDEELFEKLKLLLEAPKSEIVEKIQKILEEKKNLE 737

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIM 826
            ++   KRKL +N E+++  K+ + N + +++S   +V+   LK ++D +  +I+ GI++
Sbjct: 738 KEIQEIKRKL-INPEEIA-KKVKEYNNIKYVVSVLEDVEPDILKDLIDNISDRIK-GIVL 794

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+      K  V + V ++L   +NA ++A+L +KVLGGGGGG  P  AQ+GG    K D
Sbjct: 795 LIS-KMSDKIIVTVKVPKELTQDYNAGNIAKLVSKVLGGGGGGS-PTFAQAGGKLIEKID 852

Query: 887 QAIAGVASFLKK 898
           +A       ++K
Sbjct: 853 EATELFEKIIRK 864


>gi|282890190|ref|ZP_06298720.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499847|gb|EFB42136.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 876

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 361/904 (39%), Positives = 520/904 (57%), Gaps = 48/904 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL +F+++GH ++ SS + P +DP+L+FTN+GM  FK++F G+    Y   TT QK
Sbjct: 6   IRRQFLNYFKEHGHRVISSSPVFPHDDPSLLFTNAGMNQFKDVFLGKSARDYHRATTSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK  AIQ AWD+ T+ F  D + ++
Sbjct: 66  CIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKAEAIQFAWDISTQVFGFDPQHIW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-PG 185
            TV+ +DEEAF+LW +   + A KI R    DNFWSM E GPCGPCSE+++D+G    P 
Sbjct: 126 PTVFRDDEEAFELWTRY--VPASKITRFGEKDNFWSMGEVGPCGPCSELYYDRGSKYGPA 183

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
             P     GERY+E WNLVFMQF +        LP+ SIDTG G+ER+  +     + + 
Sbjct: 184 NNPSEDVTGERYLEFWNLVFMQFNRLEDGSLSPLPRPSIDTGAGIERVVGLKMGVDSVFG 243

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            D+ + LI  +EQV    Y+  NI       VI DHLR  +F IADG+ P+N  RGYVLR
Sbjct: 244 TDVLRELIAQTEQVFNKSYDPTNIQTAPAFHVIADHLRCLAFAIADGVQPSNVDRGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           +++RRA+ Y R LG   P +  +LP L   MG  Y EL+QA+  I E L  E+E F +TL
Sbjct: 304 KVLRRAVRYGRSLGMDTPFLADILPRLVATMGEDYKELVQAQQRIAEILTVEEEAFLRTL 363

Query: 363 DRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
            RG  +L+ ++         ++GD AFKL DT+G PL+ ++ I     L  ID   F   
Sbjct: 364 RRGGNILNQIIEGAQNTHHRISGDDAFKLKDTYGFPLEEIELIARDANLV-IDKERFELL 422

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R          +  ++    + + AT F+GY+ L                  
Sbjct: 423 ENEAKERSRQVQKTTQQIASTNLFVDFVKTHAATTFLGYEQL------------------ 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIR 540
                   + V  +V   + V + ++GQ   ++ DQTPFYAE GGQ+GDTG  +   G+ 
Sbjct: 465 -----SARATVTGLVVDQQFVNQIIAGQDAMIILDQTPFYAEMGGQIGDTGTIVNHQGMS 519

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+T+     +G+  H   +  G L+   S+  ++D   R+++  NH+ATHLLH AL  +
Sbjct: 520 FQVTNTISPYQGVIAHVGTLTHGHLKVGDSVEASVDAPRRQKIENNHTATHLLHWALHHV 579

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + P  LRFD +H KP+T  EL  IE+ VN  I  NLPV T  +  E+A 
Sbjct: 580 LGEHVKQAGSVVEPGRLRFDFSHHKPLTKQELNEIENLVNQRIRLNLPVKTYEIAYEEAQ 639

Query: 661 AS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            S       G KY  +VRVV  E+      S  LCGGTH S+ G I L  I  E SI AG
Sbjct: 640 KSTDIKQFFGEKYGAKVRVVDAEF------SKELCGGTHTSALGNIGLFRIAKEGSIAAG 693

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           +RRIEA+TG+ A S     ++ + SLA  LK     +  R+E++ EE ++L  ++ + K+
Sbjct: 694 VRRIEAVTGEDAESLSRHSEQFIDSLAELLKTQPQKLQERIEKLVEENKQLAQEMKNLKK 753

Query: 778 -KLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K++  V +LS  +   ++ +  II++VD  + EL++ ++ LQ K+ SG+I L G+++E 
Sbjct: 754 GKMEGMVTELS-QQTEVIHHIPTIIAKVDVPAAELRNFLELLQAKMGSGVIAL-GVTEED 811

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K  ++I V++DL+ +  NA  L +  A ++  G GGG+P+MAQ+GG    K  +A+A   
Sbjct: 812 KCHLIIRVSDDLVAKGINASQLIKTLAPMI-EGTGGGKPNMAQAGGKAPQKLTEALAKFR 870

Query: 894 SFLK 897
             L+
Sbjct: 871 ELLQ 874


>gi|118594479|ref|ZP_01551826.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118440257|gb|EAV46884.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 872

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 366/907 (40%), Positives = 535/907 (58%), Gaps = 56/907 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH ++ SSSL+P  DPTL+FTN+GM  FK++F G+E+  Y    + QK
Sbjct: 7   IRAQFLKFFEDKGHHVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGEEQRNYVRAASSQK 66

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F + + +L 
Sbjct: 67  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWELLTEVFAIPKEKLL 126

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179
           +TVY +D EA+ +W+K  G+  +KII+I  N       DNFW M +TGPCGPCSEIF+D 
Sbjct: 127 VTVYADDNEAYSIWEKDIGIPTEKIIKIGDNKGSQYASDNFWMMGDTGPCGPCSEIFYDH 186

Query: 180 GECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G+ I GG+PGS +E+G+R+IEIWNLVFMQF + +K     LPK S+DTGMGLER+  +LQ
Sbjct: 187 GDTIEGGVPGSHNEDGDRFIEIWNLVFMQFNRDDKGVMHPLPKPSVDTGMGLERITAILQ 246

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +  +NYDID+F+ LI  + ++T  K       + +V+ DH+R+++FLI DG+LPANEGRG
Sbjct: 247 DVHSNYDIDIFRELIAEAAKLT--KTNNTEHPSLKVLSDHIRATTFLIGDGVLPANEGRG 304

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +   LG   P    L+  L   MG  Y    +   LIE  +  E++RF
Sbjct: 305 YVLRRIIRRAIRHGYKLGVRAPFFFKLVAPLNLVMGDTYRFSKEQSSLIESEIHLEEKRF 364

Query: 359 GKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T++ G+ +L+  +  L GK++  ++G VAFKL+DT G PLD+  D+    G++ I+  
Sbjct: 365 FETIENGMGILEDTIKELVGKNKTAISGKVAFKLHDTFGFPLDLTADVCRENGIS-INSE 423

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+  +++Q++ AR            K    +      T F+GYD               
Sbjct: 424 EFDAEMDKQKTMAR-------EAGNFKAKLQINYSGPDTVFLGYD--------------- 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +  S+I+  I+   + V    +G+   ++ DQTPFYAE+GGQ+GD G    
Sbjct: 462 --------KSSTSAILLGILTHEQSVASITNGESAMLILDQTPFYAESGGQIGDIGSISS 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +     +TD  K    I+VH   + +G L     +   I++++R+ +  NHSATHL+H A
Sbjct: 514 EEGVFDVTDTFKIKGNIYVHVGSMIKGKLSINDKIEADINHEHRQHVMRNHSATHLMHKA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG+H+ Q GS +     RFD +H KP+T  E  SIE  VN  I +N      +M+ 
Sbjct: 574 LKEILGNHIEQKGSLVDSYRTRFDFSHPKPLTYKEKTSIELMVNQEILKNQTTQASVMDI 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A  +GA  L G KY D+VRV+ +       +S  LCGGTHV+ TG+I L  I SES I
Sbjct: 634 DSAKKTGAMMLFGEKYGDKVRVLEIG------NSKELCGGTHVAKTGDIGLFKIQSESGI 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRR+EA TG      +  Q+  + ++   L V    V  +V ++ ++ +  + I ++
Sbjct: 688 SSGIRRVEATTGLNVIGLIAAQETIIDNVTKELNVGASEVTSKVSQLMKQLKDNEKIISQ 747

Query: 777 RKLQL---NVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K ++      DL    I      F+   +  V++ EL+ ++D L++K QS +I+L G  
Sbjct: 748 LKSKIAGSEGSDLVGQAIDTGKYQFLGVSVDRVEANELREMIDNLKEKFQSAVIIL-GSH 806

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              K S  + VT++L     A D+A+L  + + GG GGGR +MA +GGPN    D+AI+ 
Sbjct: 807 SNNKVSFAVGVTDNLTQEIKAGDIAKLLGEAV-GGKGGGRDNMAMAGGPNIQLIDEAISQ 865

Query: 892 VASFLKK 898
           +   L K
Sbjct: 866 IKDHLIK 872


>gi|257784262|ref|YP_003179479.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472769|gb|ACV50888.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 881

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 363/905 (40%), Positives = 524/905 (57%), Gaps = 58/905 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF+  G +  PSSSL+P +DP+L+  N+GM  FK  + G +       T
Sbjct: 8   TTAEIREDFLSFFESKGCKRYPSSSLVP-SDPSLLLANAGMNQFKEYYQGIKTMKEIGAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QKC+R     ND+DN+G + RH +FFEMLGNFSFGGY K  A   A + ++  +   L
Sbjct: 67  SCQKCLRT----NDIDNIGDS-RHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RLY TV+ +D+EA ++WK + G++ D I R+   DNFW+   TGPCGPCSEI+FDQG
Sbjct: 122 PLDRLYFTVFTDDDEAIEIWKSL-GITEDHITRLGEEDNFWAAGPTGPCGPCSEIYFDQG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G  PG  ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLER+A ++Q +
Sbjct: 181 PEFEGEAPG--DDGDRYLEFWNLVFTQFDRQEDGSLPELPHRNIDTGMGLERIAAIMQHE 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
             NY+ D+ + LI   E+++G KY   + ++   R++ DH R+ +F+I DGILP NEGR 
Sbjct: 239 GTNYEGDIMRTLISLGEKLSGKKYHSTDEIDRSLRILADHSRAVTFMIGDGILPGNEGRS 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRR++RRA+ + RLLG     M      +   +G+ YPEL++   LI+  L +E+ERF
Sbjct: 299 YILRRLLRRAVYHGRLLGIQGTFMAEYAHEVAVLLGAEYPELVEKSALIDGILTAEEERF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           G TLD G   L   L  L     L+G+VAF L+DT+G P+D+ ++I    G   +D+ +F
Sbjct: 359 GATLDAGESKLTAELEQLEDGAQLSGEVAFLLHDTYGFPIDLTREIAANAGHV-VDMDAF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + A+ EQR RAR  +     G  + IW +L ++   T F GYD                 
Sbjct: 418 DAAMTEQRERARKSANRDAWGNAQSIWVALSDRLDETVFDGYD----------------- 460

Query: 479 KPPIDLTNGVSSI-VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                  N +S + V A+VQ G+ VE A  G +VEVV D+TPFYAE GGQ+GDTG   G 
Sbjct: 461 ------NNELSGVRVVALVQDGQEVESATVGSEVEVVLDRTPFYAEMGGQVGDTGRLSGP 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ + +TD + +  G+  H  +VE G L    S+  TID   R  +  NH+ATHLL  AL
Sbjct: 515 GLYVHVTDTKHRDGGLESHIGVVEEGTLSIGDSVTATIDAGRRELIRRNHTATHLLDAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD +RFD TH + +T  EL  IE  VN  I    P+VT+IM+ E
Sbjct: 575 KKVLGDHVNQAGSLVAPDRMRFDFTHFEALTKDELDRIEGMVNAEIFAAKPIVTKIMSIE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA A+GA AL G KY D VRVVS   ED    S  LCGGTH  +T ++ L  I+SESS+ 
Sbjct: 635 DAKAAGAVALFGEKYGDVVRVVSAGTED-TPFSRELCGGTHARNTADLGLFKIISESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +  RRIEA+T   A  ++  +  +L  +A+ LKV    V  RVE++ ++ R      A  
Sbjct: 694 SNSRRIEAVTSMGAIEYVDERLAQLDEVAAALKVRPSAVADRVEQLQQDLRA-----ANH 748

Query: 778 KLQLNVEDLSCHKIAD-------VNFMSHIISEVD---SKELKSVMDALQKKI--QSGII 825
           KL+  +     +++A+       +N  S +I++++    KEL+S  D ++     Q    
Sbjct: 749 KLEAALTGAGSNQVAEALKSAVQLNGYSCVIAKLEGLSGKELRSAWDGIRDASDGQPVAC 808

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++   + + K S+L   T+  +   F+A D+ +  A+ + GG GGG+P MAQ+GG N   
Sbjct: 809 VIASATADGKVSLLAGATDSAVAAGFSAGDIVKEIAEFV-GGRGGGKPAMAQAGGSNAAG 867

Query: 885 ADQAI 889
            D A+
Sbjct: 868 IDAAL 872


>gi|302391203|ref|YP_003827023.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203280|gb|ADL11958.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 875

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 366/899 (40%), Positives = 555/899 (61%), Gaps = 57/899 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL++F+  GH +LPS+ L+P NDP+L++ N+GM PFK  F GQ  P    + T QK
Sbjct: 8   IRQKFLDYFESKGHLILPSAPLVPQNDPSLLWINAGMTPFKPYFNGQATPPKTRIVTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND+ NVG+T+RHHTFFEMLGNFSFG YFKE AI+ ++D L  E +L Q RL+
Sbjct: 68  CIRT----NDIGNVGKTDRHHTFFEMLGNFSFGDYFKEEAIKWSYDFLVNEIELKQDRLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I++Y +DEEAF++WK   G+  ++I+R+  ++NFW +  TGPCGPCSEI +D G     G
Sbjct: 124 ISIYKDDEEAFEIWKNKIGIPTERIVRMGKDENFWQIG-TGPCGPCSEIHYDLGAEF--G 180

Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
              + + G   +RY E+WNLVF Q++     E   LP  +IDTGMGLER+A+++Q+  +N
Sbjct: 181 CSDNCDFGCDCDRYREVWNLVFTQYDYTEDGEYKTLPSKNIDTGMGLERLASIIQQVDSN 240

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ DLF  +I+   + T   YE ++ +   +RVI DH+RS +  I DG+LP+NEGRGY++
Sbjct: 241 FETDLFIPIIEFISEHTEYDYESSDEIKSAYRVIADHIRSVTLAIGDGVLPSNEGRGYII 300

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA+ YA+ L    P +  ++P +   MG+ Y E+   +  I++T++SE+ +F +T
Sbjct: 301 RRVLRRAVRYAKKLDLKLPFLHRIVPVVVDIMGNEYTEIADKEEQIKKTIKSEEVKFQET 360

Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LD+G+V+L+ ++  L  +  E++ GD  F LYDT+G P ++ ++I   RG   ID   F 
Sbjct: 361 LDQGMVILEELIDELEGEGREVIPGDEVFTLYDTYGFPKELTEEIAQERGYR-IDSEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +A+EEQR+RARA        + E +++  L+++    +F+GY                  
Sbjct: 420 EAMEEQRARARAAQKDHDWSSAEIELFKELRDEIEMPEFVGY-----------------T 462

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +P  +     + +VK I++  E+V+   +G++ +VV  +TPFYAE+GGQ+GD G  + D 
Sbjct: 463 QPECE-----TEVVK-IIKDNELVDSLSAGEEGQVVLTKTPFYAESGGQIGDKGALLSDD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           I + + D Q+KAE +  H  ++E G L     L   I    R  +  NH+ATHLLH AL 
Sbjct: 517 ITVTVVDTQEKAE-LISHQVVIEAGKLSVGDKLTAKIQTDQRIYIRRNHTATHLLHQALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q+GS +TP+ LRFD TH + ++  ELK IE+ VN +I +NL V       E+
Sbjct: 576 DILGEHVDQSGSLVTPERLRFDFTHFEAVSEEELKEIEERVNQVIRKNLEVEVLKTTLEE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GAAAL   +Y+D VRV+ +     G +S  LCGGTHV + GEI L  I SE  I A
Sbjct: 636 AKKMGAAALFSEQYDDEVRVIKI-----GDYSLELCGGTHVDAAGEINLFKITSEGGIAA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG+ A +++  Q++ LK  A+ LK +   VV ++E++  + + L  ++   K
Sbjct: 691 GVRRIEAVTGKEALNYINQQEDILKEAAAALKANPEEVVEKIEKLQSKIKDLEAEVTKFK 750

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833
            KL  +  D     I ++N ++ ++ EV   D++ L+++ D +++++ SGII+L     E
Sbjct: 751 NKLADSQADEVASDIEEINGINVVLEEVEGLDAEGLRTMGDNIKEELDSGIIILASKLGE 810

Query: 834 KKASVLIV--VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           K   VL V  VT+DL+D  +NA  +    A+V  GGGGGGRP MAQ+GG   +K D A 
Sbjct: 811 K---VLFVSLVTDDLVDEGYNAGQIIGEVARV-AGGGGGGRPDMAQAGGSQPDKLDAAF 865


>gi|51893138|ref|YP_075829.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|59798515|sp|Q67MV8|SYA_SYMTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51856827|dbj|BAD40985.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 872

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 364/918 (39%), Positives = 533/918 (58%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F++FF+  GH  +PSSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    T 
Sbjct: 4   AEIRQKFIDFFKSKGHVHVPSSSLVPHNDPTLLFTNAGMNQFKDTFLGLEKREYTRAVTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDLD VG T RHHTFFEMLGNFSFG YFKE A+  AW+ +T      L +
Sbjct: 64  QKCVRAGGKHNDLDEVGFTARHHTFFEMLGNFSFGDYFKEDALAYAWEFITSPEWLGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            RL++++Y +DE+AF +W    G+ AD+I+R+   DNFW M +TGPCGPCSEIF+D G  
Sbjct: 124 DRLWVSIYKDDEQAFDVWHNKVGVPADRIVRLGEKDNFWRMGDTGPCGPCSEIFWDMGPE 183

Query: 182 --CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             C  P G    +   +R+ E WN VFMQ+  Q  +    L +  +DTG+GLERMAT++Q
Sbjct: 184 YACDHPDGCRIDTCGCDRWREFWNNVFMQY-NQTPEGLVPLERTGVDTGLGLERMATIMQ 242

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DIDL++ +     +++G KYEG     V  RVI DH R  +FLIADG+  +NEG
Sbjct: 243 GVWSNWDIDLWQPIFARIHELSGKKYEGEGPEAVAFRVIADHARCCTFLIADGVRFSNEG 302

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV+RRI+RRA+ + R+LG+ EP +  +  A+   MG AYPE+ +   +I++ LR E+E
Sbjct: 303 RGYVMRRILRRAVRFGRVLGFAEPFIWKVAGAVADVMGDAYPEVRERLPVIQDELRREEE 362

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL++G+  L+ +L+ + +  + +++G  AF LYDT+G PLDI++D+   +G   +D
Sbjct: 363 RFLRTLEQGMNRLEEILARMRQKGETVISGQDAFVLYDTYGFPLDIVRDVAREQGFT-VD 421

Query: 415 IISFNQA----------------LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
              +  A                + E +SR   H  G+                  T+F+
Sbjct: 422 EQGYQAAMAEQRARARAARDVSYITEVQSRIAGHLEGVAP----------------TRFV 465

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY  L G     E R                  V A+  Q      A  G  V +V D+T
Sbjct: 466 GYTELAG-----EGR------------------VLAVFDQEGNATGAGEGSSVIIVLDRT 502

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ+GDTG  +  G+R+++ D +K   G  +H+  V+ G L     +   +D +
Sbjct: 503 PFYAEGGGQVGDTGQIVAPGLRVEVEDCRKLPSGHHLHYGTVQEGFLEVGQQVEARVDAR 562

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+    NH+ATHLLH AL  +LG+HV Q GS + PD LRFD TH+ P+T  ++ ++E+ 
Sbjct: 563 KRKDTQKNHTATHLLHKALREVLGTHVQQAGSLVAPDRLRFDFTHTGPMTPEQIAAVEEM 622

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +N  I    PV    M  ++A A GA AL G KY + VRVVSV    G   S  LCGG H
Sbjct: 623 INAEIEAAEPVTWTEMPLDEARALGAMALFGEKYGEIVRVVSV----GDGWSRELCGGCH 678

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           VS+T E+    I+SES I  G+RRIEA+TG     HL  ++ + +++      +Q  +  
Sbjct: 679 VSNTSEVQYFKILSESGIGGGVRRIEAVTGPGVIRHL--EEAQARAVE-----AQEQLRS 731

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           R++E+ +E  +L+   A  +    VE     ++  V  ++        ++L+++ DA++ 
Sbjct: 732 RMKEMEKELEQLRAKLAASQTDSLVE--RAQEVGGVKVVAGTAPVATMEDLRNMTDAIRA 789

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K+ SG+++L  ++ E K +++  VT+DL  R +A +L R  A++  GGGGGGRP MA +G
Sbjct: 790 KLGSGVVVLGAVTSEGKVNLVAAVTKDLAGRVHAGNLIREVARIC-GGGGGGRPDMATAG 848

Query: 879 GPNGNKADQAIAGVASFL 896
           G N  +  +A+  V   +
Sbjct: 849 GKNPERLGEALNAVPGLV 866


>gi|254283834|ref|ZP_04958802.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219680037|gb|EED36386.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 380/889 (42%), Positives = 530/889 (59%), Gaps = 56/889 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL +F+   H  + SSSL+P +DPTL+FTN+GM  FK  F G E   Y   T+
Sbjct: 3   TAEIREAFLSYFESQQHTRVASSSLVPHDDPTLLFTNAGMNQFKETFLGLEVRDYTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW  LT+   L + 
Sbjct: 63  SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQFAWTFLTEVLGLPKA 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL+ITV+  D+EA  +W    G+  +++ R+   DNFW M +TGPCGP SEIF+D G  +
Sbjct: 123 RLWITVHISDDEAAAIWIDEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADV 181

Query: 184 PGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           PGG PGS ++  +RYIEIWNLVFMQF +        LP  S+DTGMGLER+A VLQ   +
Sbjct: 182 PGGPPGSEDDDLDRYIEIWNLVFMQFNRDADGTLHPLPAPSVDTGMGLERIAAVLQGVHS 241

Query: 243 NYDIDLFKHLIQASEQ---VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+IDLF+ LI A+     VT ++++     + RVI DHLRS  FL+ADG+LP NEGRGY
Sbjct: 242 NYEIDLFQALIAATAARLGVTDLEHK-----SLRVIADHLRSCCFLVADGVLPGNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P    L+P L  +MG AYPEL  ++  I   L +E+++F 
Sbjct: 297 VLRRIIRRAIRHGSKLGADGPFFSALVPELVAQMGDAYPELRDSESRIASALANEEDQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD GL +LDG L+ L    ++ G++ F+LYDT+G P+D+  DI   RG   +D+  + 
Sbjct: 357 RTLDNGLSILDGELAAL-SGTVIPGELVFRLYDTYGFPVDLTNDIARERGFT-LDLDGYE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQ 478
            A++EQR R++        G + K+ +S      G T+F GYD                 
Sbjct: 415 AAMDEQRKRSQ-------EGGSFKVDYSNTVALEGETEFTGYD----------------- 450

Query: 479 KPPIDLTNGVS-SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                  +GVS + V A+++ G+ V     G    VV ++TPFY E+GGQ+GDTG    +
Sbjct: 451 -------SGVSEATVMALLKDGDAVSTLEEGDDGIVVLNRTPFYGESGGQVGDTGFLSAN 503

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            ++ ++ D   KA+G  +HH  +  G L T+ S+   ID   R+Q+ +NHSATHLLH AL
Sbjct: 504 DVKAEVRDT-TKAQGHHLHHVKILSGTLATDASVRAEIDVSVRQQIRLNHSATHLLHAAL 562

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS +    LRFD ++ KP++  EL +I D VN+ I  N PV T  M+ +
Sbjct: 563 RQVLGEHVTQKGSLVDSQRLRFDFSNEKPVSKTELSTISDIVNEQIRGNTPVTTENMSMD 622

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+ +GA AL G KY D VRV+++  +   V    LCGGTHV  TG+I +L IV+ES + 
Sbjct: 623 AAMDAGAMALFGEKYGDSVRVLTMGNDRFSVE---LCGGTHVERTGDIGVLKIVAESGVA 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG RA +     + +L ++   LK     VV +V  +  E R L+   A+ 
Sbjct: 680 AGVRRIEAVTGARALAAFAAGESQLDAVCEALKTRADTVVDKVTALRSEARDLEKEVARL 739

Query: 778 KLQLNVE---DLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L      DL+     +  +  ++  I   D   L+  +D  + K+   +++L  +  
Sbjct: 740 KQKLASASGGDLTADAVDVGGIKVLAATIDGADVATLRETLDQCKNKLGDAVVLLAAVEG 799

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           E K S++  V++ L  +  A DL R  A  L GG GGGRP MAQ GG +
Sbjct: 800 E-KISLVAGVSKALTKQVKAGDLMREFAGRL-GGKGGGRPDMAQGGGSD 846


>gi|307265211|ref|ZP_07546770.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390157|ref|ZP_08211718.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|306919833|gb|EFN50048.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993805|gb|EGD52236.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 877

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 362/909 (39%), Positives = 547/909 (60%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +L   +S L   GK  +L G  AFKLYDT+G PLD+ ++IL   G+  +D  
Sbjct: 361 ETIDQGLTILQDYISELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE+QR RAR+      S   + I+ +L +    T+F+GYD        + D KVL
Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDT------YESDSKVL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                            AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    
Sbjct: 471 -----------------AIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDKGVLEN 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +   +++ D +K  +  F+H   +ERG++     +   ID  +RR  + NH+ATHLLH A
Sbjct: 514 ENALIKVNDCKKIGDK-FIHTGTIERGLISVGDEVKAQIDVVSRRNAARNHTATHLLHKA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       
Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+  GA AL   KY D+VRVV ++      +S  LCGGTHV +T EI +  IVSES++
Sbjct: 633 DEAVKEGAVALFTEKYGDKVRVVKIDD-----YSMELCGGTHVKNTNEIGIFKIVSESAV 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774
            AG+RRIEA+TG  A  +L  ++E LK  +  LKV    ++ ++E + +  + +  ++  
Sbjct: 688 GAGLRRIEALTGLAAIKYLGEKEEILKEASDLLKVQDKEIISKIESLQQVLKTKDKEIEQ 747

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K+   + D   +    ++ +  ++S+V   DS+ LK++ D L+ K++   ++L   +
Sbjct: 748 LKIKMASILADSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKIAAVVLASST 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E KA  + + T+D++ +   +D+  +  +V  +  G GGGRP MAQ  G N +K D+A+
Sbjct: 808 PE-KAIFVGMATKDVVQK--GIDMGAIIKEVCKVSEGNGGGRPDMAQGTGKNLSKVDEAL 864

Query: 890 AGVASFLKK 898
                 +K+
Sbjct: 865 NKAIDIVKE 873


>gi|163781728|ref|ZP_02176728.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882948|gb|EDP76452.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 873

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 358/900 (39%), Positives = 528/900 (58%), Gaps = 50/900 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF++ GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y    + QK
Sbjct: 8   IRELFLSFFERKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGVEKRPYTRAVSCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFKE AI+ AW+ +T    L + +LY
Sbjct: 68  CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKESAIEYAWEFVTGTLKLPEEKLY 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY +DEEA+++W +  G+ +++I ++   DNFW M ETGPCGP SEI+ D+GE   G 
Sbjct: 128 VSVYRDDEEAYRIWSEKVGVPSERIWKLGDEDNFWQMGETGPCGPSSEIYVDRGEEYEG- 186

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                   ERY+EIWNLVFMQ+ +  K     LPK +IDTGMGLER+A+VLQ    NY+I
Sbjct: 187 -------DERYLEIWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERVASVLQNTKTNYEI 239

Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D+   LI+  E V+G +Y    +  V  RVI DHLR+  F I+DG+LP+NEGRGYV+RRI
Sbjct: 240 DIIYPLIEFGEGVSGHRYGESPDTDVALRVIADHLRALIFAISDGVLPSNEGRGYVIRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +   LG  EP +   +  +   M   YPEL  ++  ++  +R E+ERF +TL  
Sbjct: 300 LRRALRFGYKLGVEEPFLNRGIDLVVDIMKDPYPELDMSREFVKGVVRGEEERFIRTLKA 359

Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           G+  ++ ++    ++  + L G+  FK YDT+G PLD++ +I   RGL  IDI  F + +
Sbjct: 360 GMQAVEELIERAKEEGRDTLKGEEVFKAYDTYGFPLDLIDEIARERGLK-IDIAGFQEEM 418

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           E+QR RAR H   + +   + ++  LK+    ++F+GY+                     
Sbjct: 419 EKQRERARKH-FKVETKKVKPVYQHLKDIGKTSEFVGYEHYE------------------ 459

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  + +  +V+  E+V E   G++ E++  +TPFY E GGQ+GDTG    D    +
Sbjct: 460 -----YETELMGVVKGEELVSELSEGEEAELILRETPFYPERGGQVGDTGVIESDRALFK 514

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D Q   +G+ VH   + +G LR    +V  +D + R  +  NH+ATHLLH AL  +LG
Sbjct: 515 VEDTQSPVDGVIVHRGKLLKGTLRVGDRVVARVDRERREDIMRNHTATHLLHAALKNLLG 574

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS +    LRFD TH + +T  ELKSIE+ VN+ I +N+PV    M+ + A+ S
Sbjct: 575 EHVRQAGSLVADRYLRFDFTHFEALTREELKSIEELVNEKIRENMPVQVNEMDYQSALRS 634

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY D VRV+S      G  S  LCGGTHVS TG+I    I+SESS+ AG+RR
Sbjct: 635 GAVAIFEEKYGDTVRVIS-----AGEFSRELCGGTHVSRTGDIGYFKILSESSVGAGVRR 689

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRK 778
           + A TG+ A      +   L+ +A  L   +  V+ R+E    E+ E+ R++  +  +  
Sbjct: 690 LIAQTGRWAVETAFREHTLLEDVAQSLNAKEEEVLSRLESLKSELKEKEREISRLR-QEL 748

Query: 779 LQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           L+  +E  +   ++ +          V ++EL+++ D L+ K    ++ L+   K+ K S
Sbjct: 749 LKFQIETSVKREEVGEFTLFWGKFKGVGAEELRNLADMLRHKTGKDVVFLLS-EKDGKLS 807

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            ++ V+++  DR  A  L +   + L  GGGGGR  +AQ GG N    ++A+  + + LK
Sbjct: 808 TVVAVSKETTDRVKANQLIKELGRAL-KGGGGGREDLAQGGGSNPGGFEEAVKILRNRLK 866


>gi|20807697|ref|NP_622868.1| alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22096187|sp|Q8RAH4|SYA_THETN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|20516247|gb|AAM24472.1| Alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 878

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 359/907 (39%), Positives = 543/907 (59%), Gaps = 52/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SL+P ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLVPKNDKSLLLINSGMAPLKPYFTGKETPPSRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ + +   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHATFFEMLGNFSFGDYFKKEAIPWAWEFVAEVLKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T+Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVTIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             G P      ++ +RY+E WNLVF QF +  +     LP  +IDTGMGLER+A ++Q  
Sbjct: 181 GCGKPDCGIGCDDCDRYVEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIAAIMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +D+D+ + +      +  ++Y  + +  V+ RVI DH+R  +F+I+DGILP+NEGRG
Sbjct: 241 DTIFDVDVIRGIRDFISDLAEVEYGKDADKDVSIRVITDHIRGITFMISDGILPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I++ ++ E+ERF
Sbjct: 301 YVLRRLLRRAARHGKLLGLNDAFLYKVVDSVVENYGGAYPEIIERKDYIKKIIKLEEERF 360

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +T+D+GL +L   ++ L   GK  +L G  AFKLYDT+G PLD+ ++IL   G+  ID 
Sbjct: 361 KETVDQGLAILQDYINELKAQGKT-VLEGAKAFKLYDTYGFPLDLTKEILQESGIT-IDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             + + LE+QR RAR+      S   + I+ +L +   +T+F+GY++       + + KV
Sbjct: 419 EGYKEELEKQRVRARSSRKEDNSLWEQDIYSTLGDI--STKFVGYEV------YESEAKV 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                 AIV+  E+VE+A +G  V ++ D TPFYAE+GGQ+GD+G   
Sbjct: 471 L-----------------AIVKDNEVVEQAEAGDDVSIILDVTPFYAESGGQVGDSGVIE 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +   +++ D  KK    F+H   VERG++     +V  ID   R+  + NH+ATHLLH 
Sbjct: 514 EEDTLIKVNDC-KKVGNKFIHIGTVERGLISVGDKVVAKIDVSKRKGAARNHTATHLLHK 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q+GS +  D LRFD +H + ++  ELK IE+ VN+ I + LPVV    N
Sbjct: 573 ALKEVLGDHVNQSGSLVAYDRLRFDFSHYQAVSKEELKKIEERVNEKIYEQLPVVVEEKN 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA+  GA AL   KY D+VRVV ++      +S  LCGGTHV +T EI +  IVSES+
Sbjct: 633 YEDALKEGAVALFTEKYGDKVRVVKIDD-----YSMELCGGTHVKNTSEIGIFKIVSESA 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLI 773
           + AG+RRIEA+TG  A  +L  Q E L  ++  LK  +  VV ++E + +    ++ ++ 
Sbjct: 688 VGAGLRRIEALTGIEAIKYLNEQKEILDRVSETLKAQEKEVVSKIENLQQSLKDKEREIE 747

Query: 774 HAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+  +  E L  S   +  V  ++  + + D + LK++ D L+ +++S  ++L   
Sbjct: 748 GLKTKIASILAETLIDSAISVDGVKVIASRVEDYDMEALKTLGDILKDRLKSAAVILASS 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           SK+ KA  + + T+D +++   +         +  G GGGR  MAQ  G N +K  +A+ 
Sbjct: 808 SKD-KALFVGMATKDAVEKGVNMGAVIKETCSIAEGNGGGRAEMAQGTGKNISKVKEALE 866

Query: 891 GVASFLK 897
                +K
Sbjct: 867 KAIEIVK 873


>gi|281416686|ref|ZP_06247706.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|281408088|gb|EFB38346.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20]
          Length = 880

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 354/899 (39%), Positives = 558/899 (62%), Gaps = 50/899 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y  +    V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K  +++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++E ++ AR  +    GS   + I+  L +K   T+F+GY                
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKL-DKSVKTEFLGY---------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +  ++ V  I+++ ++V+EA  G+ V V+ D+TPFYAE+GGQ+GD G    
Sbjct: 463 -------TESEATARVLYIIKEDQVVDEAQKGESVTVILDRTPFYAESGGQVGDKGLIEA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH A
Sbjct: 516 EGARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ 
Sbjct: 576 LRNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES +
Sbjct: 636 DEARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q  +  
Sbjct: 691 ASGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQ 750

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + KL  +  D    K  ++N +  + +   + D + L++  D ++ K+ SG+++L G  
Sbjct: 751 LRSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTG 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              K S++++ T+D++ +  +A ++ + +AKV  GGGGGGRP MAQ+GG + +K D+A+
Sbjct: 810 FGGKVSLVVMATKDVVAKGIHAGNIIKEAAKV-AGGGGGGRPDMAQAGGKDVSKIDEAL 867


>gi|291286777|ref|YP_003503593.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883937|gb|ADD67637.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 877

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 359/902 (39%), Positives = 519/902 (57%), Gaps = 47/902 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLE+F ++GHE++ SSSL+P +DPTL+FTN+GM  FK+ F G+E   Y   TT QK
Sbjct: 8   IRKKFLEYFAEHGHEIVSSSSLVPHDDPTLLFTNAGMNQFKDTFLGRETRSYTRATTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            VRAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+  W+ LTK   L   +++
Sbjct: 68  VVRAGGKHNDLENVGVTSRHHTFFEMLGNFSFGDYFKEDAIKFGWEFLTKVVGLPAEKMF 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY++DEEA ++W+ + GL A  I      DNFW+M +TGPCGPCSEI  DQGE     
Sbjct: 128 VSVYNDDEEAAQIWRDVIGLDAKDIEYRGEKDNFWAMGDTGPCGPCSEIHIDQGEHTGCQ 187

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P      E +R++E+WNLVFMQ+ +        LPK SIDTGMGLER+A+V+Q  T+NY
Sbjct: 188 SPDCDRNCECDRHLELWNLVFMQYNRSEDGTLTPLPKPSIDTGMGLERVASVVQGVTSNY 247

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           D DLF  +I+    + G KY   E +N V+ RVI DH R+++FLI DG+LPAN+GRGYVL
Sbjct: 248 DTDLFLPIIKYIADLAGKKYGDSEKDN-VSMRVIADHSRAATFLIGDGVLPANDGRGYVL 306

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM + R+LG        +   +   M   Y EL   K  I + + +E++ F +T
Sbjct: 307 RRIMRRAMRHGRMLGLEGAFFYKVCGFVVDFMKGHYIELADKKPYIAKVVTNEEQSFSRT 366

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ GL ++D +L      + ++G+  FK+YDT G P+D++ DI    G   +D   F Q 
Sbjct: 367 LNTGLKIIDELLEKNKDSKTISGEDIFKMYDTFGFPVDLLADIAEDNGYV-LDNAGFEQE 425

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RA+    G G      ++  L      ++F+GY+ L                  
Sbjct: 426 MHTQQERAKKSWSGSGEQRVADVYIKLASTL-KSEFVGYEELEAE--------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
               + V++I+K   Q      E   G+  +++  +TPFYAE GGQ GD G    D    
Sbjct: 470 ----SEVAAIIKNDAQS-----ETAEGE-CDIILTKTPFYAEGGGQAGDIGYIKTDTAVF 519

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++T   K  +G+       E G+++   ++   +D   RR    NH++TH+LH AL  +L
Sbjct: 520 KVTGTHKYGDGMIAMRGFTELGVIKMGETVKAQVDKTARRATERNHTSTHILHKALQMVL 579

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS + P+ LRFD  H  P+++ E+  IE+  N+ I  N  +    MN +DA+ 
Sbjct: 580 GDHVRQAGSQVNPERLRFDFNHYAPVSAEEIMRIEEIANEEIQANTALKKTYMNIDDAVN 639

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY ++VRVV +     G  S  LCGG HV  TG+I LL + SE+S+ +G+R
Sbjct: 640 SGAMALFGEKYGNKVRVVEI-----GDFSKELCGGCHVDRTGDIGLLKVTSEASVASGVR 694

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG  A + +   D   K  A  LK +   +  R+ E+ +  +  +    K   Q+
Sbjct: 695 RIEAVTGMAAVAGMQKLDALAKDGAKLLKTTPDGLYERMVELTDSLKDKEKELKKIADQM 754

Query: 782 NVEDLSCHKIADVNFMSHI------ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             +D +   + DV  +S I      ++  D+  ++  +D  + +I SG++ + G   + K
Sbjct: 755 ASKD-AAGLMDDVKIVSGIKVLAAKLANGDADAMRKFVDTARDRIGSGVV-VAGAVTDDK 812

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              +  VT+D   +  A D+ R  AK+  GGGGGGRP MAQ+GG +  K D+AIA V   
Sbjct: 813 VIFVCGVTKDTTGKVKAGDIVREVAKIT-GGGGGGRPDMAQAGGKHPEKLDEAIANVEKI 871

Query: 896 LK 897
           ++
Sbjct: 872 VE 873


>gi|149924852|ref|ZP_01913189.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149814267|gb|EDM73872.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 919

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 360/930 (38%), Positives = 530/930 (56%), Gaps = 51/930 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++  +IR+ FL FF++ GH  +PSS L+P +DPTL+F N+GMV FK++FTG++K  Y   
Sbjct: 5   ADAHAIRSAFLSFFEERGHAAVPSSPLVPFDDPTLLFVNAGMVQFKDVFTGRDKRDYTRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+C+RAGGKHNDLDNVG T RHHT FEMLGNFSFG YFK  AI+  W+ LT+  +L 
Sbjct: 65  TSAQRCLRAGGKHNDLDNVGFTPRHHTLFEMLGNFSFGDYFKRDAIRWGWEFLTQVLELP 124

Query: 122 QRRLYITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
             +L ++V++        D+EA+ LW +I  +  ++I      +NFW M +TGPCGPCSE
Sbjct: 125 AEKLVVSVFNGEGENAPFDQEAYDLWAEI--IPKERIYAFDAKENFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGE--CIP-GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           I   +GE    P GG PG     E ++Y+E+WNLVFMQ+E+    E   LP  S+DTG G
Sbjct: 183 IHIWRGEGGAPPDGGKPGKGPAFEDDKYMELWNLVFMQYEKLASGEMTKLPAPSVDTGAG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIAD 288
           LER+A VL+    NY+  LF  ++   + + G+  ++G    ++RVI DH R+++FLIAD
Sbjct: 243 LERLAAVLEGVETNYETGLFVPIVDKVKALAGVSGHQGEREASYRVIADHARATAFLIAD 302

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P   GR YVLRRIMRRA+ +A L+G  +     +   +    G AYPEL +A+ +I 
Sbjct: 303 GVTPDQTGRPYVLRRIMRRAIRHATLVGLEDLFFHEVCDEVVNRFGEAYPELREAREVIA 362

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
             ++ E+E F +TL RGL  +  +L+ L  +  ++   D A  LY + G P+D+ + I  
Sbjct: 363 GAVKIEEEGFRRTLARGLRRVSKILAGLEAEGSKVFPVDEAADLYTSAGFPIDLTRVIAE 422

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
              L  +D  +  + LE Q+    +   G G      ++F +  + G  T F+GY    G
Sbjct: 423 ENELT-LDEAAVAEKLEAQKG--ESSFAGGGGSKVADVYFDIVNELGQGTAFLGYGATAG 479

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +K    ++   P  +   G  ++      +   VE A +GQ VE++FDQ+PFY E+G
Sbjct: 480 EATLK---AIVIPAP--EPAEGEPAL------EPTRVESAQAGQAVELIFDQSPFYGESG 528

Query: 526 GQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+GDTG   A+  G  + +T   K   G+ VHH  +  G +      VL +D   R  +
Sbjct: 529 GQVGDTGALRAVDGGAVVTVTQTSKPTGGLHVHHGELAGGSIAVGQRFVLEVDVARRDAI 588

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATH+LHHAL  +LG HV+Q GS + PD LRFD +H++ +T  E + IE  VN ++
Sbjct: 589 RRNHSATHMLHHALRKVLGKHVAQKGSLVAPDRLRFDFSHARSVTREETRRIEAEVNAMV 648

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVS 700
             N P  T  M+  DA  +GA  L G KY   VRVV+   VE E G   S  LCGGTHV+
Sbjct: 649 LANAPTGTAEMSLADAKQAGAIGLFGEKYGAEVRVVTIGEVETEAGEERSVELCGGTHVA 708

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGR 759
             G++ L  IV+E  +  G+RRIEA+TG  A   +  + E +  +AS L+    G V+GR
Sbjct: 709 RAGDVGLFKIVAEGGVAQGVRRIEAMTGMGAVEWVQERAEVVDQVASDLRARDLGEVLGR 768

Query: 760 VEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELK 810
           +E++ EE   R  ++   KRKL          ++ +       V   +  I   D K ++
Sbjct: 769 LEKLHEELAARGREIDSLKRKLATGGGGSQASEVVEVEGGGKTVKLTARRIPVADPKIMR 828

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL--GGGGG 868
              D L+ ++ SG+++L G  ++ KA++L+  T+DL  +   V   +L+A ++    G G
Sbjct: 829 EAADTLRDRMGSGVVVLAG-ERDGKANLLVATTKDLA-KGKIVHAGKLAAALVVHVDGRG 886

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGRP MAQ+GGP     D  +A  A  L K
Sbjct: 887 GGRPDMAQAGGPKVAGLDDVVAHAAEELAK 916


>gi|125975678|ref|YP_001039588.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|205830037|sp|A3DKB6|SYA_CLOTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125715903|gb|ABN54395.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
          Length = 880

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 354/899 (39%), Positives = 557/899 (61%), Gaps = 50/899 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y  +    V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIKESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K  +++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++E ++ AR  +    GS   + I+  L +K   T+F+GY                
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKL-DKSVKTEFLGY---------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +  ++ V  I+++ ++V+EA  G  V V+ D+TPFYAE+GGQ+GD G    
Sbjct: 463 -------TESEATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH A
Sbjct: 516 EGARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ 
Sbjct: 576 LRNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES +
Sbjct: 636 DEARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q  +  
Sbjct: 691 ASGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQ 750

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + KL  +  D    K  ++N +  + +   + D + L++  D ++ K+ SG+++L G  
Sbjct: 751 LRSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTG 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              K S++++ T+D++ +  +A ++ + +AKV  GGGGGGRP MAQ+GG + +K D+A+
Sbjct: 810 FGGKVSLVVMATKDVVAKGIHAGNIIKEAAKV-AGGGGGGRPDMAQAGGKDVSKIDEAL 867


>gi|256003587|ref|ZP_05428576.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|255992378|gb|EEU02471.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|316939793|gb|ADU73827.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 880

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 354/899 (39%), Positives = 557/899 (61%), Gaps = 50/899 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y  +    V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K  +++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++E ++ AR  +    GS   + I+  L +K   T+F+GY                
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKL-DKSVKTEFLGY---------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +  ++ V  I+++ ++V+EA  G  V V+ D+TPFYAE+GGQ+GD G    
Sbjct: 463 -------TESEATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH A
Sbjct: 516 EGARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ 
Sbjct: 576 LRNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES +
Sbjct: 636 DEARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q  +  
Sbjct: 691 ASGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQ 750

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + KL  +  D    K  ++N +  + +   + D + L++  D ++ K+ SG+++L G  
Sbjct: 751 LRSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTG 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              K S++++ T+D++ +  +A ++ + +AKV  GGGGGGRP MAQ+GG + +K D+A+
Sbjct: 810 FGGKVSLVVMATKDVVAKGIHAGNIIKEAAKV-AGGGGGGRPDMAQAGGKDVSKIDEAL 867


>gi|224372192|ref|YP_002606564.1| alanyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|223588444|gb|ACM92180.1| alanyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 853

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 366/912 (40%), Positives = 543/912 (59%), Gaps = 81/912 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  FLEFF+  GH++ PS+ L+P +DPTL+FTN+GMVPFK IFTG EKP  +     + 
Sbjct: 3   IRKKFLEFFESKGHKVYPSAPLVP-DDPTLLFTNAGMVPFKPIFTG-EKPAPEPPRACSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI  AW+ +T+  +L + +
Sbjct: 61  QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPKEK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180
           L+IT+++ D+EA K+W+K   +  ++I+++   DNFW M +TGPCGPCSEI FDQG    
Sbjct: 121 LWITIHESDDEAGKIWEKY--VPKERIVKMGDKDNFWQMGDTGPCGPCSEIHFDQGADKF 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
              E   GG      +G+R++EIWNLVFMQ+ +    +   LPK SIDTGMGLER+  + 
Sbjct: 179 NSPEDYLGG------DGDRFLEIWNLVFMQYNRDESGKLTPLPKPSIDTGMGLERITAIK 232

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296
           +  T+NYD  +F+ L++   ++TG +Y  +    +HRVI DH+R+ +FL A G+  + EG
Sbjct: 233 EGVTSNYDSSIFRPLLEKIVEITGKEYHTDKRGASHRVIADHIRAVTFLTAQGVQFSREG 292

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RR + +  LLG  EP M  ++  L  +MG  YP L++ K  +++T++ E+E
Sbjct: 293 RGYVLRRILRRGVRHGYLLGMREPFMYKIVDTLAEQMGEQYPYLLEKKESVKDTIKLEEE 352

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +T+D+G+ L +  L     D   +G+VAFKLYDT+G PLD+ QD+L       +D+ 
Sbjct: 353 RFFETIDKGMQLFEEELKKTTGD-TFSGEVAFKLYDTYGFPLDLTQDMLREVN-KQVDMK 410

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +FN  ++EQ+ RARA+  G G     KI     EK    +F+GY+               
Sbjct: 411 TFNALMQEQKDRARANWKGSGD---VKINLKDLEKVENNKFVGYEHTE------------ 455

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---- 532
                        + VKA+  +   + E ++G    V+ ++TPFYAE+GGQ+GD G    
Sbjct: 456 -----------YKTKVKALFDENMNMVETLNGSGW-VMLEETPFYAESGGQVGDKGELRT 503

Query: 533 --CAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
              +    +R+  ++ D +K  +    + + V    L+T   +V  +D +NR +++ NH+
Sbjct: 504 YPTSQNGELRIVAKVVDTKKFDDK---NLSKVVEAELKTGDEVVAKVD-ENRSEIAKNHT 559

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  + LRFD TH K +T  EL+SIE+ VN +IA+++P
Sbjct: 560 ATHLLHAALRKVLGEHVTQAGSLVEANRLRFDFTHPKALTKEELESIEEMVNRVIAKSIP 619

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              + M+ ++A   GA AL G KY D VRVV       G  S  LCGGTHV++T E+   
Sbjct: 620 AEVKEMSIDEAKKMGAMALFGEKYGDVVRVVKF-----GDFSVELCGGTHVNNTAEVNSF 674

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           YI+ ES + AG+RRIEA+ G  A  +  G  + ++ + S  K    ++   VE+  EE +
Sbjct: 675 YIIKESGVSAGVRRIEAVAGFGAYRYAKGFRDLVEEIKSENKAK--DLKAFVEKQKEEIK 732

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           KL     K +++  +E  +  +I  VN   ++++I  +D+  L+ +   L+ ++ + +  
Sbjct: 733 KL-----KTEIK-ELEKAAVKEIKPVNKDGINYVIERIDNANLREIATDLKGRVDNLVAF 786

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E K  V +V     +D   A DL +  A ++ GG GGG+P  AQ GG +  K D
Sbjct: 787 LAG---ENKGKVTLVAV-STVDSVKAGDLIKNYAPIV-GGKGGGKPDFAQGGGKDSGKID 841

Query: 887 QAIAGVASFLKK 898
           + IA V   L K
Sbjct: 842 EMIAQVKKDLIK 853


>gi|164688540|ref|ZP_02212568.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM
           16795]
 gi|164602953|gb|EDQ96418.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM
           16795]
          Length = 879

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 356/907 (39%), Positives = 545/907 (60%), Gaps = 52/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +F +FF+  GH +  SSSLIP ND +L+  NSGM P KN F+G E P    ++TV
Sbjct: 7   NEIRKSFTDFFESKGHYIGKSSSLIPKNDKSLLLINSGMAPLKNYFSGVEVPPKNRMSTV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEM+GNFSFG YFKE AI+ AW+ +TK  ++ + +
Sbjct: 67  QKCIRTG----DIENVGKTARHGTFFEMMGNFSFGDYFKEDAIKWAWEFVTKHLEIPEDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           ++ TVY  D+EA  LW K S +  ++I+R+  +DNFW +   GPCGPCSE+++D+GE   
Sbjct: 123 IWATVYLNDDEAHDLWLKYSSIPEERIVRLGKDDNFWEIG-LGPCGPCSELYYDRGEQYG 181

Query: 182 CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+E WNLVF QF++Q       L   +IDTGMGLER+  ++Q+ 
Sbjct: 182 CDNPDCKPGC--DCDRYLEFWNLVFTQFDRQEDGSYPELAHKNIDTGMGLERIGCIMQDV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D  + +I   E+V+G+KY  +  + V+ R+I DH+R+ SF+IADGILP+NEGRG
Sbjct: 240 DNIFEVDTIRAIIDEIERVSGVKYGVDAKSDVSIRIITDHIRAMSFMIADGILPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG  E  + +L   +    G AYPEL++ +  I++ ++ E+E+F
Sbjct: 300 YVLRRLLRRAARHGKLLGIKEDYLYNLFDVVKEVSGEAYPELVEKEGYIKKVIKIEEEKF 359

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D+G  +L+G +  L    +  L G+  FKLYDT+G P+D+ Q+IL   G   +D  
Sbjct: 360 NETIDQGSEILNGYIEELKANNESTLAGEKVFKLYDTYGFPMDLTQEILEEVGF-DLDEE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN  +++QR RAR+    +   + ++   S  +   A+ F GY  L             
Sbjct: 419 GFNTEMDKQRERARSARGNMEGESWKEDPLSTLDSSVASTFCGYKHL------------- 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       + +V AIV+  EIV+    G K  +V D+T FYAE GGQ+GD+G    
Sbjct: 466 ----------STTGVVNAIVKDDEIVDSITEGDKAIIVLDRTTFYAEGGGQVGDSGILEN 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    ++   +K A     H  IV++G + T+  L   ++ + R   + NHSATHLLH A
Sbjct: 516 ENAVFEVITTKKGANNTIKHIGIVKKGSINTKDELKSLVNREIRMASARNHSATHLLHKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG HV+Q GS +TP+ LRFD+TH +PI+  EL  +E  VND+I Q+L +   +M  
Sbjct: 576 LKETLGEHVNQAGSLVTPERLRFDITHFEPISKEELDIVERKVNDVILQSLDIDCEVMGI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A   GA AL G KY + VRVVS+     G +S  LCGGTH+++T ++ L  I+SE  +
Sbjct: 636 NEAKEKGAMALFGEKYGNEVRVVSM-----GDYSIELCGGTHLNNTSQVGLFKILSEGGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEAITG+    +L  +DE ++   + LK  + N+V RV  + EE + L  +L  
Sbjct: 691 AAGVRRIEAITGRSVYEYLNNRDELIEETCNALKTKEDNLVHRVNALVEENKSLTKELHD 750

Query: 775 AKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K+ L   D    S  ++  VN ++    ++D   LK + D L+ K+QSG++ +  +S
Sbjct: 751 VKAKMSLQSADKLMDSKVEVNGVNLVTAKFEDMDMNSLKEMADNLRDKLQSGVVAISNVS 810

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + K + ++  T+D++DR  ++ ++ +     + GG GGGRP+MAQ+G  +  K D+A++
Sbjct: 811 -DSKVNFVVTATKDVIDRGIHSGNIVK-EIAKIAGGKGGGRPNMAQAGATDATKIDEALS 868

Query: 891 GVASFLK 897
                +K
Sbjct: 869 YACEVIK 875


>gi|226311489|ref|YP_002771383.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094437|dbj|BAH42879.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 377/913 (41%), Positives = 537/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF + GH + PS+ L+P +DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   NQIRQMFLDFFVEKGHRIEPSAPLVPIDDPSLLWINSGVATLKKYFDGRIIPDNPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVGRT RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    D 
Sbjct: 67  QKSIRT----NDIENVGRTARHHTFFEMLGNFSIGEYFKEEAIEWAWEFLTSPKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF+LW K  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFELWNKKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V+
Sbjct: 180 F-GNDPSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMTSVI 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   NN++ DL   LI+ + +++G+KY+ +    V  +VI DH R+  F I DG LP+NE
Sbjct: 239 QGVDNNFETDLLFPLIEKTTEISGVKYKTSPEMDVALKVIADHARTVVFAIGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYV+RR++RRA+   + LG  +P +  L   + T MG  YPE++Q +  IE+ +R+E+
Sbjct: 299 GRGYVIRRLLRRAVRMGKKLGVEKPFLYSLTETVGTMMGEFYPEVVQKRAFIEKVIRAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ERF +TL+ GL +L  ++      GK ++   DV FK+YDT+G P+D+ +D    +GL  
Sbjct: 359 ERFHETLNDGLAILSDMVKAAKDSGKTQLSGQDV-FKMYDTYGFPVDLTEDFADEQGLT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++A+EEQR RARA    + S   +     L +    +QF+GY  L  +      
Sbjct: 417 VDRDGFDKAMEEQRERARAARQDVDSMQIQG--GPLSDLTVTSQFVGYTELVAT------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V+AI+   ++VEEA  GQ V+VV  QTPFYAE+GGQ+ D G
Sbjct: 469 -----------------GKVEAIILDNQLVEEAEEGQTVQVVLSQTPFYAESGGQINDEG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I D ++ ++TDVQK   G  VH  IVE G LR    +   ++ + R  ++ NH+ATHL
Sbjct: 512 FLISDIVKARVTDVQKGPMGQNVHSVIVEAGTLRKGDDVRAEVNREARLAITQNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS + P+ LRFD TH   IT  EL+ IE  VN+ +  NL V   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVAPERLRFDFTHISSITPEELERIEAIVNEKVWANLGVEIS 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  +VS
Sbjct: 632 NKPLAEAKAMGAMALFGEKYGDVVRVVKV-----GEYSLELCGGCHVNNTAEIGLFKLVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
           ES I AG RRIEA+TG+ A   L  Q   LK +A  LK         RVE + ++ +++Q
Sbjct: 687 ESGIGAGTRRIEAVTGRGAYQFLNQQFTTLKEVAQALKAPVLAEAPARVEGLQQQLKEVQ 746

Query: 772 LIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L N+E  S      ++  +N ++  +S VD   L+ ++D L+ K+ S +I+
Sbjct: 747 RENESLRAKLGNIEAASLTDKLQQVDGMNVLAARVSAVDMDNLRGMVDELKNKLGSAVIV 806

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNK 884
           L  +  + K +++  VT+DL+D+   +   ++  +V    GGGGGGRP MAQ+GG + +K
Sbjct: 807 LGAVDGD-KVNLVAGVTKDLMDQ--GIHAGKIIKEVATRCGGGGGGRPDMAQAGGKDPSK 863

Query: 885 ADQAIAGVASFLK 897
             +A+  V  F+K
Sbjct: 864 LQEALDAVVDFVK 876


>gi|304407565|ref|ZP_07389217.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304343516|gb|EFM09358.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 877

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 370/910 (40%), Positives = 530/910 (58%), Gaps = 75/910 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +L FF+  GH + PS+SL+P NDP+L++ N+GM P K  F G+  P    +T  
Sbjct: 4   SEIRSKWLAFFESKGHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRITNS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT +     D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKQWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            RL +TVY ED EAF+ W K  GL  ++I ++  ++NFW + E GPCGPC+EIF+D+G  
Sbjct: 120 SRLSVTVYPEDTEAFEFWNKKIGLPEERIYKL--DENFWDIGE-GPCGPCTEIFYDRGDK 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  EC PGG      E ER++E+WNLVF QF          LP  +IDTG GLER 
Sbjct: 177 YGDLNDPECWPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERF 230

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADG 289
           A++LQ+  +N+D DLF+ +I  + ++  + Y  N   +H    +VI DH+R+ +F + DG
Sbjct: 231 ASILQDVDSNFDTDLFRPMIDRTCEIANVSYHVN--ADHDLALKVIADHIRTVAFAVGDG 288

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP+NEGRGYV+RR++RRA+ Y + LG   P +  L   +   MG  YPE+++ +  IE 
Sbjct: 289 VLPSNEGRGYVIRRLLRRAVRYGKSLGIDRPFLFELTKVVGDVMGMYYPEVVEKREFIER 348

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +R+E+ERF +TL  GL LL  ++S +   GK+EI +G+ AF+LYDT+G P D+ +D   
Sbjct: 349 VIRTEEERFHETLSDGLTLLGALVSQVREAGKNEI-SGEDAFRLYDTYGFPFDLTEDYAS 407

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRG 465
             GL  +D   F+ A+E QR RARA     G    +    S L EK   ++F+GY  L  
Sbjct: 408 ENGLT-VDRAGFDSAMEAQRERARAARQETGGMNVQGGPLSELTEK---SEFVGYSELT- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +S + AIV +  +V+ A  G +V V+ D+TPFYAE+G
Sbjct: 463 ----------------------TNSKITAIVHEDSLVDIAGEGSRVLVLLDRTPFYAESG 500

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G   GDG  L + DV K  +G  VHHAIV  G +R   S   ++    R  +  
Sbjct: 501 GQIGDRGVIQGDGFVLNVEDVTKAPQGQPVHHAIVASGTVRVGESAQASVARDLREDIVK 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG HV+Q GS +  D LRFD +H   IT  EL  IE  VN+ I  
Sbjct: 561 NHTATHLLHKALKEVLGEHVNQAGSLVKSDSLRFDFSHFGAITEEELADIERRVNEQIWI 620

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             PVV       +A A GA AL G KY D VRVV V     G +S  LCGG HV++T +I
Sbjct: 621 GTPVVIESKAIAEAKAMGAMALFGEKYGDVVRVVQV-----GGYSIELCGGCHVANTSQI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               ++ ES I +G+RRIEA+TG+ A +++  Q + LK  A  LK +  +V  R+E ++ 
Sbjct: 676 GTFKLIGESGIGSGVRRIEAVTGRHAYAYMEAQFDLLKQAAGLLKSNTADVPKRIEALFG 735

Query: 766 EYRKL----QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + ++L    + + AK  +++          + DV  ++  +S      L+ ++D L+ K+
Sbjct: 736 QVKELGRDNESLQAKLSRIEAGSLTDQAKTVGDVTILTAAVSAPSMDALRGIVDELKAKL 795

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S II+L G +++ K +++  V+ D + + FNA  L + +A V  GGGGGGRP MAQ+GG
Sbjct: 796 PSAIIVL-GAAQDDKVNLVASVSPDFVKKGFNAGKLVKEAAAVC-GGGGGGRPDMAQAGG 853

Query: 880 PNGNKADQAI 889
            + +K   A+
Sbjct: 854 KDASKLADAL 863


>gi|317128237|ref|YP_004094519.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315473185|gb|ADU29788.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 878

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 369/924 (39%), Positives = 553/924 (59%), Gaps = 74/924 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+FF++ GH++ PS+SL+P  DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKKLSSAEVRQMYLDFFKEKGHDVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT E 
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAILWAWEFLTSEK 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L +T+Y +D+EAF+LW K  GL   +IIR+   +NFW + E GPCGP +EIF
Sbjct: 117 WIGFDPEKLSVTIYPDDDEAFELWNKEIGLPESRIIRL--EENFWDIGE-GPCGPNTEIF 173

Query: 177 FDQGECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +D+GE        P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGL
Sbjct: 174 YDRGEAYGNDHNDPELYPGG--ENERYLEIWNLVFSQFNHNADGSYMPLPKKNIDTGMGL 231

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIA 287
           ERM +V+Q+   N+D DLF  +I  +E ++G  Y G N V+    +VI DH+R+ +F I 
Sbjct: 232 ERMVSVIQDAKTNFDTDLFLPIIHETENISGSNY-GKNAVDDTAFKVIADHIRTVTFAIG 290

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P + + M   YPE+ + +  I
Sbjct: 291 DGALPSNEGRGYVLRRLLRRAVRYAKQIHIERPFMYELVPVVGSVMKEFYPEVTEKEAFI 350

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           ++ +++E+ERF +TL+ GL +L  V+     +  E+++G   F+LYDT+G P+D+ ++ +
Sbjct: 351 QKVIKNEEERFHETLNEGLAILTKVIEKAKGENKEVIDGVDVFRLYDTYGFPVDLTEEYV 410

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLR 464
              G + +D   F   +++QR RARA     GS  T ++I  ++KE+   ++F+GYDLL 
Sbjct: 411 LEAGFS-VDRDGFESEMKKQRERARAARQDAGSMQTQDEILGNIKEE---SEFVGYDLLE 466

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                  + ++V  IV+    V EA  G+KV+V+ D+TPFYAE+
Sbjct: 467 -----------------------IPAVVSVIVKDKAFVNEAKQGEKVQVITDRTPFYAES 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    + + L + +V+K   G  +H   V +G L   M+    +D QNR+ + 
Sbjct: 504 GGQIADKGSFENENVTLAVLEVKKAPNGQNLHTVEVIKGTLTKNMTFAAKVDAQNRKGVI 563

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV+Q GS +  D LRFD +H   I+  EL+ IE  VN+ + 
Sbjct: 564 KNHTATHLLHQALKDVLGGHVNQAGSLVAQDRLRFDFSHFGQISEDELEKIESIVNEKVW 623

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + V T   +  +A   GA AL G KY D VRVV V     G +S  LCGG HVS++ E
Sbjct: 624 DGIEVQTMYKSLTEAKEMGAMALFGEKYGDTVRVVRV-----GDYSLELCGGCHVSNSAE 678

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSE  I AG+RRIEA+T + A   + GQ + LK  A  LK    +V  R+E++ 
Sbjct: 679 IGLFKIVSEGGIGAGVRRIEAVTAKNAYQFMNGQLDVLKESAHLLKAKLNDVPFRIEQLQ 738

Query: 765 EEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDA 815
           +++++L+  +     +L      NV D    ++ +V+ +S ++ +V   D   L+ + D+
Sbjct: 739 QQFKELERENESFAAKLSQVEAGNVMD----ELKEVDGISILVKKVNVPDMNRLRQMADS 794

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           L++KI+SGI++L  ++ + K +++  V++DL+   ++A ++ +  A    GGGGGGRP M
Sbjct: 795 LKEKIESGILVLAAVNND-KVNIITSVSKDLVKEGYHAGNIVKEVA-TRCGGGGGGRPDM 852

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ+GG + +K D+A+  V   LK+
Sbjct: 853 AQAGGKDPSKLDEALKIVPDLLKR 876


>gi|302327820|gb|ADL27021.1| alanine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 882

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 355/910 (39%), Positives = 523/910 (57%), Gaps = 57/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R +F++FF+  GH  + SS ++P +DPTLMFTN+GM  FK IF G     ++     
Sbjct: 8   AQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRACNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L + R
Sbjct: 68  QKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLPKER 127

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180
           L+ TVY +D+EA+++WK +SGL  D+I+R   + NFW M +TGPCGPCSEI +D+G    
Sbjct: 128 LFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGDLAT 187

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E     + G + E +RYIEIWN VFMQ+E+ +      L   ++DTGMG ER+  +LQ
Sbjct: 188 QAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDTGMGFERICAILQ 247

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            KT+NYD D+F  +I    +++G+ Y +G     HRVI DH+R+ SF IADG LP+NEGR
Sbjct: 248 GKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSNEGR 307

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  +ARLLG  +P +  L+  L   MG A+PE+ + K  +   ++SE+E 
Sbjct: 308 GYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSEEES 367

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TLD GL     + + L K + + GD  F LYDT+G P D+   +   +GL  ID   
Sbjct: 368 FIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGLL-IDEEG 426

Query: 418 FNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           + + + EQ+ RARA+   G+ +  TE  W    E   +T F+GY+L              
Sbjct: 427 YEKCMNEQKERARANMKQGINTMGTEG-WTQYSE--ASTNFVGYEL------------SA 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           C+          + +V+    +G +           +V + +PFYAE GGQ+GD G  + 
Sbjct: 472 CE----------TKVVRWREDKGVL----------SIVLETSPFYAEMGGQVGDKGTLVS 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL--TIDYQNRRQLSINHSATHLLH 594
             + +Q+ D  K  +       +V+       M  V   T+D   R  +  NHSATHLL 
Sbjct: 512 ADLEIQVFDTVKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATHLLQ 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS ++ + LRFD +H   +T+ E++ +ED VN  I + LPV T +M
Sbjct: 572 AALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHTDVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-SSALCGGTHVSSTGEIMLLYIVSE 713
           + ++A ASGA AL G KY D+VRVV +   D GV  S  LCGG HV +TG I ++ IVSE
Sbjct: 632 DVDEAKASGAMALFGEKYGDKVRVVKM--GDAGVEFSRELCGGLHVQNTGNIGMVKIVSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           SS+ AG+RRIEA++G+ A S L    + L +L   L+     V+ R+++ + + + L+  
Sbjct: 690 SSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLEKS 749

Query: 772 LIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K +L         +    +  VN     +S  D K  K+++D +Q K+    + ++
Sbjct: 750 LQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEK-YKNLLDGVQNKLDVDSVAVI 808

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                   S+ ++V +++  +   A D+ R  AK    G GGGRP  AQ+G     K  +
Sbjct: 809 ANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKAC-NGKGGGRPDRAQAGTREPEKIAE 867

Query: 888 AIAGVASFLK 897
           AIA   ++++
Sbjct: 868 AIANANNWIR 877


>gi|290953862|ref|ZP_06558483.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312765|ref|ZP_06803502.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 804

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 359/839 (42%), Positives = 504/839 (60%), Gaps = 47/839 (5%)

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L  
Sbjct: 2   TVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKLPV 61

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D GE 
Sbjct: 62  EKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHGED 121

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GGLPG+ E+ G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ   
Sbjct: 122 VAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQNVH 181

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGYVL
Sbjct: 182 SNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGYVL 239

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F KT
Sbjct: 240 RRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFLKT 299

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F   
Sbjct: 300 IENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFLAQ 357

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ Q+ R++       +G     + SL      ++F GY  L       ED KVL     
Sbjct: 358 MQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL----- 400

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                        I Q G++V          VV D+TPFYAE+GGQ+GD G   G G   
Sbjct: 401 ------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGFEF 448

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLL+ AL  +L
Sbjct: 449 VVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKLVL 507

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A +
Sbjct: 508 GGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKAKS 567

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G+R
Sbjct: 568 LGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASGVR 622

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K +L
Sbjct: 623 RIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKKEL 682

Query: 782 ---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              +  D+    I D+  +   +  VD K L++ +D  + K  + +I ++  +   K   
Sbjct: 683 LSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKVQF 741

Query: 839 LIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +I V+  L     A D+A+ LS+ +   G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 742 VIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 798


>gi|94676688|ref|YP_588660.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|205829990|sp|Q1LTQ4|SYA_BAUCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94219838|gb|ABF13997.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 884

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 361/904 (39%), Positives = 539/904 (59%), Gaps = 63/904 (6%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           MSN S+  +R  FL FF + GH+++ SSSL+  NDPTL+FTN+GM  FK++F G +K +Y
Sbjct: 1   MSNNSTAELRQEFLNFFHQKGHKIVASSSLVSHNDPTLLFTNAGMNQFKDVFLGLDKRLY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           Q+ TT Q+C+RAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK  AIQLAW+LLT  +
Sbjct: 61  QSATTAQRCIRAGGKHNDLEKVGYTARHHTFFEMLGNFSFGAYFKCEAIQLAWELLTGGQ 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169
            F+L + +L++TVY  D+E + +W K   +  ++I+RI  N       DNFW M + GPC
Sbjct: 121 WFNLPKDKLWVTVYATDDETYNIWAKQINIPRERIVRIGDNKGKAYASDNFWQMGDIGPC 180

Query: 170 GPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPCSEIFFD G  + G  PGS  E G+RYIEIWNLVF+QF +Q       L K S+DTGM
Sbjct: 181 GPCSEIFFDHGNHLFGAPPGSQGEYGDRYIEIWNLVFIQFNRQMDGTLIPLQKPSVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A VLQ   +NYDID+F  LI+A   VT    +  N  + +VI DH+RS +FL++D
Sbjct: 241 GLERIAAVLQHVNSNYDIDIFSQLIKAVADVT----KATNTSSLQVIADHIRSCAFLVSD 296

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P+ +GRGYVLR I+RRA+ +  +LG  +     L+  L   MGS   +L Q + ++E
Sbjct: 297 GVVPSQDGRGYVLRHIIRRAIRHGYMLGARDAFFYKLVAPLIEVMGSTADQLKQQQNMVE 356

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + LR+E+E+F +TL+RGL +L+ VL+ L  D  L+G+ AF LYDT+GLP+ +  DI   R
Sbjct: 357 QVLRTEEEQFSQTLERGLFMLEQVLTKLTGD-TLDGETAFSLYDTYGLPIYLTTDICRER 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A+E QR+RAR  S           + S+      T+F+GY      K 
Sbjct: 416 NIK-VDENGFKSAMEVQRNRAREAS------RFSYKYNSMLSINQYTRFLGY------KH 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +K   K                 V A+    + VE     +K  V+ D TPFY E+GGQ+
Sbjct: 463 LKSQGK-----------------VTALYLNDQSVEVIYHSEKAIVILDYTPFYGESGGQI 505

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GD+G     +GI  ++ D +K    +  H  ++  G LR    +   ++   R ++S+NH
Sbjct: 506 GDSGKITAANGI-FEVIDTKKYGNAL-GHLGMLNYGELRIGDQVTAKVNQLRRDRISVNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL  AL  +LG HV Q GS +    LRFD +H + +   ++  +E  +N  I +NL
Sbjct: 564 SATHLLQSALRQLLGKHVVQRGSLVHDQYLRFDFSHHQAMQVEQIHEVEKIINQQIRRNL 623

Query: 648 PVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            + T +M  E A   GA ++L  +Y + +VRV+S+     G  S+ LC GTH S TG+I 
Sbjct: 624 IIKTDMMTLEAAQNQGAISVLDHQYESSQVRVLSI-----GDFSTELCCGTHASRTGDIG 678

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L +I SES I  GIRRIEAITG+ A  +L  Q   ++ ++   K    N+V +V  +   
Sbjct: 679 LFWISSESGIALGIRRIEAITGEFALKNLHQQSNLVQQISQLFKNDGSNLVEKVRGLQNH 738

Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQ 821
            ++L+  + + K +   ++++    KI+ ++    ++S++++ E   ++ ++D ++ ++ 
Sbjct: 739 IKQLESKYQQLKSKQVAQEIAVLSRKISKMHGTQVLVSKLENIEPKIMRHIVDEIKHQLG 798

Query: 822 SGIIMLVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +I+L  I+  + K +++  VT+DL +R  A D+ R   +  GG GGG +  +A +G  
Sbjct: 799 SVVIILANINLVDGKVNLIAGVTDDLTNRIQASDIIRTLIQKFGGRGGGSKK-IAYAGSI 857

Query: 881 NGNK 884
             N+
Sbjct: 858 TTNE 861


>gi|324013703|gb|EGB82922.1| alanyl-tRNA synthetase [Escherichia coli MS 60-1]
          Length = 784

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 355/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    E+
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDATALPAALASVKGWV 779


>gi|309791340|ref|ZP_07685863.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308226650|gb|EFO80355.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 895

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 362/909 (39%), Positives = 532/909 (58%), Gaps = 56/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR T+L+FF+++GH ++PS+SL+  +DPTL+F NSGMVPFK++F G E+  Y   TT 
Sbjct: 9   AQIRETYLKFFERHGHTIVPSTSLVVADDPTLLFVNSGMVPFKDVFLGLEQRPYSRATTA 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG + RH TFFEMLGNFSFG YFK  AI +AW LL +EF L   R
Sbjct: 69  QKCLRVSGKHNDLEEVGPSPRHQTFFEMLGNFSFGDYFKADAIAMAWKLLVEEFKLPVER 128

Query: 125 LYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           L+ TV+   DE   DEEA +LW    G    +++R    DNFW M +TGPCGPCSEI   
Sbjct: 129 LWFTVFAGDDEVPADEEAAQLWIA-QGADPARVLRFGRKDNFWVMGDTGPCGPCSEITMY 187

Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ +      G + +   Y+EIWN VFMQ+E+   +    LP+ S+DTGMGLERM  V+
Sbjct: 188 IGDDLAKMSAAGVNSDDPDYVEIWNNVFMQYERSTMRP---LPRQSVDTGMGLERMTMVM 244

Query: 238 QEKTNNYDIDLFKHLIQA--SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NYD DLF  +I    +E  +   +   N+  +R I DH R+ +FLIADG+LP N 
Sbjct: 245 QGVHSNYDTDLFVPIINRIITELGSDEAHYRANLAPYRAIADHSRAIAFLIADGVLPGNN 304

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GR YVLRRI+RRA    R +G+T P +  ++  +  EM  AYP+L +    I E+  +E+
Sbjct: 305 GRSYVLRRILRRAAYQGRSIGFTRPFLAEVISTVIGEMAPAYPQLAERHAFILESANAEE 364

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++F +TL  G+  L  ++  +       + G+ AF L DT+G PLD+ Q I    GL  +
Sbjct: 365 QQFLRTLSGGISRLSTIIEQVQSSGGNAVPGNDAFVLKDTYGFPLDLTQRIAGEAGLT-V 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   +  A+ EQR R+RA +     G   +IW    +   +T+F+GY  +          
Sbjct: 424 DEAGYTAAMNEQRERSRAAAQ-FKRGADAEIW--ADKGLPSTEFLGYTQV---------- 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S  + A+V  G+ V  A +G  VE+V D+TPFYAE+GGQ+GD+G 
Sbjct: 471 -------------AASGQILALVANGDDVSSATTGSPVEIVLDRTPFYAESGGQVGDSGR 517

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +G    +++ D  + A G+ VH+ +VE G +    ++   +    R  +  NH+ATH+L
Sbjct: 518 LVGPHGTVRVDDTLRPAPGLIVHYGVVESGQVTVGEAVQAEVAVTRRADIERNHTATHML 577

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  ++G H +Q GS + PD LRFD TH++ + +A+L+ IE  +N  +  +  V  ++
Sbjct: 578 QRALRDVVGEHAAQAGSLVAPDRLRFDFTHNRALDTAQLREIESRLNAWVRADGAVAWQV 637

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIML 707
           M+ + A+ +GA AL G KY D+VR+V++E       E     S  LCGGTHV  TGEI  
Sbjct: 638 MDYQAALDAGAIALFGEKYGDQVRMVTIERNGTTSMEFASRDSRELCGGTHVKRTGEIGY 697

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + +V ESSI +GIRRIEA+TG+ A      Q E L+ LA  L VS   V  RVE++  E 
Sbjct: 698 VRLVGESSIGSGIRRIEALTGRGAEVWAEQQAEVLRDLAGRLGVSVAQVSERVEQLVSEN 757

Query: 768 RKLQ--LIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+ Q  L   + K+ + ++E L  + ++   V  ++  +   D+  L+ + D L+ K+ S
Sbjct: 758 RQRQQELDALRGKMARASIESLLDTVNRDGAVPVLAAQVEAEDANRLREMGDWLRDKLGS 817

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+I+L G    +K  +L +VT DL+   ++A +L +  A+++ GGGGGGRP MAQ+GG +
Sbjct: 818 GVIVL-GTVIAEKPQILTMVTPDLVKAGYHAGNLVKALAQIV-GGGGGGRPEMAQAGGRD 875

Query: 882 GNKADQAIA 890
             K  + IA
Sbjct: 876 VRKLAEVIA 884


>gi|226227321|ref|YP_002761427.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226090512|dbj|BAH38957.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 928

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 373/957 (38%), Positives = 523/957 (54%), Gaps = 136/957 (14%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--YQA 60
           N S IR+ FL FF+KNGH + PSSSL+P +DPTL+FTN+GMV FK +F G E+     + 
Sbjct: 2   NASEIRSRFLAFFEKNGHAIRPSSSLVPADDPTLLFTNAGMVQFKKVFLGMEEAPDGKRR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK  AI+ AW+ +T++  +
Sbjct: 62  ATTSQKCVRAGGKHNDLEQVGHTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFITEDLKI 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            +  L +TV+ ED+EA +LWK ++ +  ++I  +   DNFW MA+TGPCGPC+EI+ D  
Sbjct: 122 PREHLRVTVFHEDDEARQLWKDVADVPENRIYGLGAKDNFWQMADTGPCGPCTEIYVDLA 181

Query: 181 E-----CIPGGLPG----------------SSEEGERYIEIWNLVFMQFEQQNKQERFIL 219
           +       P    G                   E  R++EIWNLVFMQF++Q       L
Sbjct: 182 KLAADWAFPADATGEWTNTEIEDYSLDAFVEGAEAGRFLEIWNLVFMQFDRQADGTLVPL 241

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------------E 265
           PK S+DTG GLER+A V+Q  TNN+  DLF+ LI   E V G+ Y              +
Sbjct: 242 PKPSVDTGAGLERIAAVMQGVTNNFHTDLFRPLIAKVEDVVGIGYPYRPGVGLGKAYAKD 301

Query: 266 GNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
           G  I   + RV+ DH R+  FL+ADG+ P+NEGRGYVLRRI+RRA+ +A LLG  EP ++
Sbjct: 302 GQEIDPASFRVLADHARAVGFLLADGVFPSNEGRGYVLRRILRRAVRHAWLLGRREPTLV 361

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL---LDGVLSHLGKDE 380
           H++  L   M   YPEL   +  I ET R+E++RF  T+D G+     L    S  G   
Sbjct: 362 HVVEVLIDTMRDLYPELHVRRKHILETTRAEEDRFLTTIDAGMSRFEELAPAASTQGSTT 421

Query: 381 I---LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS------RARA 431
           +   L+G+ AF+LYDT G P+D+   +   RG   +DI  F ++L+ QR       ++R 
Sbjct: 422 MRGTLSGEDAFRLYDTFGFPIDLTDLMARERGYL-VDIAGFERSLQAQRKQSQEDRKSRQ 480

Query: 432 HSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
            ++          W   ++   A  +F+GY+                       T  + +
Sbjct: 481 ITVSADDFADPTHWTHDQQHQAALGRFVGYE-----------------------TTEIET 517

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-- 548
           IV A+ Q        +   +V V+  +TPFYAE+GGQ+ D G   G+G  +++ +V+K  
Sbjct: 518 IVTAVRQ--------LPDGRVAVMLRETPFYAESGGQVSDHGTITGEGWTVEVNEVRKLD 569

Query: 549 ---------KAEGIFVH-HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
                      E IF   HA+V R                 RR    +H+ATHLLH AL 
Sbjct: 570 GRIAAIGSSTGEIIFGRAHAVVPR---------------DRRRDTERHHTATHLLHAALR 614

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +TPD LRFD TH  P+T+ +L +IE +VN  + Q+ PV TR  +  D
Sbjct: 615 KVLGDHVHQAGSLVTPDRLRFDFTHHGPVTAEQLAAIEADVNAGVWQSAPVNTREESYVD 674

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A GA AL G KY D VRVV +        S  LCGGTHV +T EI L+ +++ES + A
Sbjct: 675 AVAHGAMALFGEKYGDVVRVVEIPS-----LSVELCGGTHVRNTAEIGLVRVINESGVAA 729

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKR 777
           G+RRIEA++G RA   L  ++  L  +AS LKV    +    E+I    RKL  L+  ++
Sbjct: 730 GVRRIEAVSGPRAFQFLADRERALLQVASRLKVPMSGMTSGAEQI---ERKLDALMDERK 786

Query: 778 KLQLNVED-------------LSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
           +L+  +E+                 K  D      I ++V   D K L+++ DA+++ + 
Sbjct: 787 QLEKRLEESLRGGGAGGGLAQQLIAKAIDAGGTRFIAAKVDVPDVKALQALGDAVREALG 846

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           SG+ +L     + K ++L V T+D  DR    D          GG GGG+PHMAQ+G
Sbjct: 847 SGVAVLGAALADGKGALLAVATDDARDRGLRADAVVRDVAATVGGRGGGKPHMAQAG 903


>gi|258515483|ref|YP_003191705.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779188|gb|ACV63082.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 878

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 541/905 (59%), Gaps = 49/905 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +FL FF K GH ++PS+SLIP NDP++++T +GMVPFK  FTG   P +  VTT 
Sbjct: 4   NEIRDSFLNFFAKRGHYIIPSASLIPANDPSILWTAAGMVPFKPFFTGAATPEHTRVTTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R      D+D VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T    L + +
Sbjct: 64  QKCLRT----PDIDVVGKTARHHTFFEMLGNFSFGDYFKTEAINWAWEFVTVNLGLPKEK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+I++Y+ D+EAF++W K   + ADKIIR+  + NFW +   GPCGPCSEI+ D GE   
Sbjct: 120 LWISIYENDDEAFEIWHKQVAIPADKIIRLGKDTNFWEIG-VGPCGPCSEIYIDLGEHRG 178

Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G    G   + +RY+EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ+   
Sbjct: 179 CGSADCGVGCDCDRYLEIWNLVFIQFFRDEEGNYTPLENKGIDTGMGLERVASVLQDVRT 238

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DL + ++  + +   + Y  ++  +   +VI DH R+ +F I DG LP+NEGRGYV
Sbjct: 239 NFDTDLLREIMDYTAEQLKVIYGKDDKTDLALKVIADHSRAVTFAIGDGALPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ + R LG  E  +  +  A+  +M   Y +L   +  I++ + +E++RF +
Sbjct: 299 IRRLIRRAVRFGRSLGVDELFLHKVAGAVIHQMSGTYTDLGSNQGHIKKVILNEEKRFSE 358

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G  +L+ ++       + +++G  AF+LYDT+G PL++ Q+I   +GL  ID  SF
Sbjct: 359 TLANGTEILNKLIEEAIRAGNAVISGLDAFQLYDTYGFPLELTQEIAGEQGLL-IDEDSF 417

Query: 419 NQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            QA+E QRSRAR A         T  ++ +++++ G T FIGY+ L+       + KVL 
Sbjct: 418 VQAMESQRSRARSARQETEYISETGVLYKNIRDERGTTNFIGYNALQA------EAKVL- 470

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                           A+V+ G+ V+ A +G ++E+V D TP YAEAGGQ+ D     G 
Sbjct: 471 ----------------ALVKDGQNVQSAQAGDEIEIVLDITPCYAEAGGQVTDFAVLSGQ 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + + I+ V K  E + VH   VE G+L+   ++ + +  + R  ++ NHSATHLLH AL
Sbjct: 515 DLNVMISQVIKPVENLIVHKGKVESGLLQVNDTVKIEVAGERRLSIARNHSATHLLHKAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD LRFD TH   +++ EL  IE  VN  I  NLPV     +  
Sbjct: 575 KEVLGEHVNQAGSLVEPDRLRFDFTHYAAVSNEELNKIEKIVNRTILSNLPVTVSESSLS 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GAAAL G KY D VRVV +     G  S  LCGGTH+ ST EI L  ++SESSI 
Sbjct: 635 KAREMGAAALFGEKYGDLVRVVKM-----GEFSLELCGGTHIHSTAEIGLFKLISESSIG 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RR+EA+TG+ A  ++  ++++L  LA  +K S   +V RVE I +  ++L+      
Sbjct: 690 SGLRRVEAVTGEGALHYIETKEQQLLMLAHLVKSSPNELVRRVESIIKSVKELEHESEAL 749

Query: 778 KLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L    VE+L      I ++  ++   S  D   L++++D L+ KIQSGI+ L   + 
Sbjct: 750 KAKLARFEVENLLSQVKMIKNIKVLAAKASAADMDSLRAMVDLLRDKIQSGIVFLSA-AN 808

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             KA+++  VT+DL     +A  L +  A V+ GGGGGGRP MAQ+GG + ++  +AI  
Sbjct: 809 NGKANLVAAVTKDLTSIGLHAGKLIKEVAPVV-GGGGGGRPDMAQAGGKDASRIPEAIEK 867

Query: 892 VASFL 896
           V + +
Sbjct: 868 VYTVV 872


>gi|261415443|ref|YP_003249126.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371899|gb|ACX74644.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 882

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 354/910 (38%), Positives = 522/910 (57%), Gaps = 57/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R +F++FF+  GH  + SS ++P +DPTLMFTN+GM  FK IF G     ++     
Sbjct: 8   AQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRACNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L + R
Sbjct: 68  QKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLPKER 127

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180
           L+ TVY +D+EA+++WK +SGL  D+I+R   + NFW M +TGPCGPCSEI +D+G    
Sbjct: 128 LFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGDLAT 187

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E     + G + E +RYIEIWN VFMQ+E+ +      L   ++D GMG ER+  +LQ
Sbjct: 188 QAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDIGMGFERICAILQ 247

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            KT+NYD D+F  +I    +++G+ Y +G     HRVI DH+R+ SF IADG LP+NEGR
Sbjct: 248 GKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSNEGR 307

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  +ARLLG  +P +  L+  L   MG A+PE+ + K  +   ++SE+E 
Sbjct: 308 GYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSEEES 367

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TLD GL     + + L K + + GD  F LYDT+G P D+   +   +GL  ID   
Sbjct: 368 FIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGLL-IDEEG 426

Query: 418 FNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           + + + EQ+ RARA+   G+ +  TE  W    E   +T F+GY+L              
Sbjct: 427 YEKCMNEQKERARANMKQGINTMGTEG-WTQYSE--ASTNFVGYEL------------SA 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           C+          + +V+    +G +           +V + +PFYAE GGQ+GD G  + 
Sbjct: 472 CE----------TKVVRWREDKGVL----------SIVLETSPFYAEMGGQVGDKGTLVS 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL--TIDYQNRRQLSINHSATHLLH 594
             + +Q+ D  K  +       +V+       M  V   T+D   R  +  NHSATHLL 
Sbjct: 512 ADLEIQVFDTVKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATHLLQ 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS ++ + LRFD +H   +T+ E++ +ED VN  I + LPV T +M
Sbjct: 572 AALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHTDVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-SSALCGGTHVSSTGEIMLLYIVSE 713
           + ++A ASGA AL G KY D+VRVV +   D GV  S  LCGG HV +TG I ++ IVSE
Sbjct: 632 DVDEAKASGAMALFGEKYGDKVRVVKM--GDAGVEFSRELCGGLHVQNTGNIGMVKIVSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           SS+ AG+RRIEA++G+ A S L    + L +L   L+     V+ R+++ + + + L+  
Sbjct: 690 SSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLEKS 749

Query: 772 LIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K +L         +    +  VN     +S  D K  K+++D +Q K+    + ++
Sbjct: 750 LQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEK-YKNLLDGVQNKLDVDSVAVI 808

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                   S+ ++V +++  +   A D+ R  AK    G GGGRP  AQ+G     K  +
Sbjct: 809 ANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKAC-NGKGGGRPDRAQAGTREPEKIAE 867

Query: 888 AIAGVASFLK 897
           AIA   ++++
Sbjct: 868 AIANANNWIR 877


>gi|33519641|ref|NP_878473.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|81666648|sp|Q7VQG3|SYA_BLOFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33517304|emb|CAD83689.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 891

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 358/913 (39%), Positives = 527/913 (57%), Gaps = 57/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  FL+FF K  H+++PSSSL+P ND TL+FTNSGM  FK+IF G  KP Y+ V T
Sbjct: 5   IDVVRQEFLDFFHKQEHQVVPSSSLVPKNDQTLLFTNSGMNQFKDIFLGLVKPSYKRVVT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            Q+C+RAGGKHNDL+NVG T  H TFFEMLGNFSFG YFK+ AIQ AW+LLT    F L 
Sbjct: 65  AQRCMRAGGKHNDLNNVGYTECHLTFFEMLGNFSFGDYFKDDAIQFAWELLTDSNWFGLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-------NDNFWSMAETGPCGPCSE 174
           + ++++T + ED+E++ +W K  G+S  +I++I         +DNFW M   GPCGPCSE
Sbjct: 125 KDKIWVTTHIEDDESYNIWVKQVGISTKRIVKIGNKNSDLYDSDNFWQMGNIGPCGPCSE 184

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + G  PG  +  G RYIEIWNLVFMQF +Q       LP +S+DTGMGLER+
Sbjct: 185 IFYDFGSDLKGKPPGYMQGLGSRYIEIWNLVFMQFNRQLNDRLIDLPMLSVDTGMGLERI 244

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
             +LQ   +NY ID+FK+LI     +  +K   NN  +  VI DH+R+  FLI DG++P+
Sbjct: 245 TAILQGVHSNYLIDVFKNLIVDISNIMKVKEYINN-RSLYVIADHIRACVFLIKDGVVPS 303

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEG+GYVLRRI+RR++ + R LG  +  +  L+  +   M      L   K LIE+ L +
Sbjct: 304 NEGQGYVLRRIIRRSVRHGRKLGVNDIFLYKLVNLVIVHMNYVSNILYDQKDLIEQILFN 363

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ F  TL +GL LL+  L +L +D+IL+G++AF+LY T+G PL++ +DI C R +  +
Sbjct: 364 EEKLFNNTLKKGLELLEKSLKNLNQDKILSGEIAFQLYTTYGFPLELTKDICCERNIK-V 422

Query: 414 DIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D + F+Q  L E+R+  R   L         I  S   K   + F+GY            
Sbjct: 423 DQLEFDQIMLTERRNSKR---LSQFHKNFNNIILSSYAK--TSTFVGYKCFS-------- 469

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDT 531
               CQ   I           A++Q  E++ +     Q+  V+ D TPFY E+GGQ+GD+
Sbjct: 470 ----CQSKII-----------ALLQDNELINKMCDVDQESMVILDITPFYGESGGQIGDS 514

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+    ++ + +K  + I VH  ++  GI      +   ++   R+ +S+NHS+TH
Sbjct: 515 GYLKGECGVFKVKNTKKYGQ-IIVHIGVLISGIFLIGEQVFAQVNRLKRKDISVNHSSTH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV+Q GS I     RFD +H   IT  ++  +E+ +N  I  NL V  
Sbjct: 574 LLHSALLKILGSHVTQQGSLINDKYFRFDFSHYNAITITQINEVENLINQQIWDNLLVTE 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A   GA  LL  +Y ++VRV+ +     G  S  LCGGTHVS+T EI L  I 
Sbjct: 634 NIMLMESARNIGAIMLLHKQYTEKVRVIQI-----GDCSIELCGGTHVSNTNEIGLFIIT 688

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            E  I +G+RRIEA+T   A S +  + + ++++A   +    N++  + E    Y KL 
Sbjct: 689 KEFGIGSGVRRIEAVTKNAALSVIQNKKKLIQNIAQIAQSDDVNLLNVIHEFKARYEKLD 748

Query: 771 ---QLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              +L+++K+++Q  V  L    + I +V  + + +  ++S  L  ++  L+  +QSGI+
Sbjct: 749 REIKLLNSKQEIQ-KVLSLVREVYYIKNVRVLVNHVKNMESSSLFKMVKLLKHYLQSGIV 807

Query: 826 MLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L+ I K   A ++I +T+DL+  +R  A+DL +   + +  G GGGR   AQ    N  
Sbjct: 808 VLINIRKNNIAHIVISITKDLVECNRIYAIDLIQYIIRSVKNGKGGGRFDFAQLNINNVK 867

Query: 884 KADQAIAGVASFL 896
              + +  + S L
Sbjct: 868 NVSELVIQIQSLL 880


>gi|124514184|gb|EAY55699.1| Alanyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 891

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 370/898 (41%), Positives = 526/898 (58%), Gaps = 65/898 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL +F  +GH+++PS+SLIP  DPTL+FTN+GMVPFK+IF G EK   +   ++QK
Sbjct: 6   LRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRAVSIQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW  LTKE  +D+R L+
Sbjct: 66  CVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMDRRLLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY ED+EA +LW++++ +  D+I+R+   DNFW M +TGPCGPCSEI  DQGE    G
Sbjct: 126 VTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGERFSCG 185

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P      + +R++EIWNLVFMQ+++  +     LP+ SIDTGMGLER++ V+Q+K +NY
Sbjct: 186 SPDCKVGCDCDRFLEIWNLVFMQYDRNAEGVLSPLPRPSIDTGMGLERLSAVVQKKDSNY 245

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DLF  LI+  E  + + Y   EG+    +RVI DHLRSS FL+ +GI P+NEGRG+VL
Sbjct: 246 ETDLFMPLIRTIETYSRVHYGAGEGSLDHAYRVIADHLRSSVFLLHEGIAPSNEGRGHVL 305

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ + R LG   P++  L  ++   M   YPEL  +   I++ LR E+ RF +T
Sbjct: 306 RRIIRRALLFGRELGLPHPILPSLAESVAEMMAKPYPELRTSLSRIQDVLRLEEGRFHQT 365

Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L+ GL L+  +L  L K  +++  G++ F L+DTHG PLDI++D    +G+  +D   F 
Sbjct: 366 LESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQGIL-LDYKGFE 424

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +EEQR R R+      +G  E       +   + +F GY+            K   Q 
Sbjct: 425 EKMEEQRERGRSS----WTGKKEDFPLPSDKLKKSVEFQGYE------------KTSMQG 468

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             + L NG            E V+E  +G+ V VV D+T FY E GGQ+GD G  IG   
Sbjct: 469 TVLFLLNG-----------KEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDLIGPFG 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++   +K   G  V    V  G +    ++   +D + R+    +H+ATHLLH AL T
Sbjct: 518 YIRVRGAKKPYPGWIVLSGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLHAALRT 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V Q GS + P+ LRFD T  +P++   L ++E  VN  I +N PV    M +  A
Sbjct: 578 VLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDASEMEKSKA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A    KY DRVRVV V        S  LCGGTHV STG+I  L I+ E+ + AG
Sbjct: 638 LDMGALAFFDEKYGDRVRVVQVPGT-----SVELCGGTHVRSTGQIGSLLILQETGVAAG 692

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHA 775
           IRRIEA+ G  A    +   ++LK L   L+    ++  +   I  E     +++Q + +
Sbjct: 693 IRRIEAVAGPLAYQKAVTWRQELKDLRELLEAGTSSLEEKTRTILRENAACQKEIQSLKS 752

Query: 776 K---------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +         RK  L VE    H++A ++     +S  D +EL+  MDA++ KI SG I+
Sbjct: 753 RLFSLEEKHSRKETLEVEG---HQLAVLH-----VSLDDPRELRVRMDAIKSKIPSGAIL 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883
           L+G + +K A  L   + DL + F      + L+A+V  GG GGG+P  A+ GGP  +
Sbjct: 805 LIGETTDKLA-FLGWTSSDLGEAFPISQWVKTLAAEV--GGKGGGKPSWAEGGGPKPD 859


>gi|149194975|ref|ZP_01872068.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134896|gb|EDM23379.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 846

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 360/892 (40%), Positives = 529/892 (59%), Gaps = 60/892 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTVQ 65
           IR  FL+FF+  GH++ PS+ L+P +DP+L+FTN+GMVPFK IFTG++  P     T+ Q
Sbjct: 3   IRKKFLDFFESKGHKVYPSAPLVP-DDPSLLFTNAGMVPFKPIFTGEKPAPTPPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI  AW+ +T+   LD+ RL
Sbjct: 62  LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLKLDKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +IT+++ D+EA K+W+K   +S D+I+++   DNFW M +TGPCGPCSEI +DQGE    
Sbjct: 122 WITIHESDDEAGKIWQKY--VSKDRIVKMGDKDNFWQMGDTGPCGPCSEIHYDQGEKFNS 179

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                  EG+R++EIWNLVFMQ+ +    +   LP+ SIDTGMGLER+  V +   +NY+
Sbjct: 180 SEDYLGGEGDRFLEIWNLVFMQYNRDESGKLTPLPRPSIDTGMGLERITAVFEGVESNYE 239

Query: 246 IDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
             +FK LIQ   ++TG +Y +     +HRVI DH+R+ SFL+A G+    EGRGYVLRRI
Sbjct: 240 TSIFKPLIQKVVEITGKEYFKDKRGASHRVIADHIRAVSFLVAQGVRFDREGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RR + +  +LG  EP M  ++  L  +M   YP L + K  I+E ++ E+ERF +T+D+
Sbjct: 300 LRRGVRHGYMLGMKEPFMYKIVDTLANQMKDNYPYLEEKKEAIKEAIKIEEERFFETIDK 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L    LS    + I +G+VAFKLYDT+G PLD+ QD+L       +DI +F++ ++E
Sbjct: 360 GMALFKEELSKTTGN-IFSGEVAFKLYDTYGFPLDLTQDMLREVN-KKVDIETFDRLMKE 417

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q+ RARA+  G G    +KI     EKY   +F+GY+                       
Sbjct: 418 QKERARANWKGSGD---KKINLKDLEKYPPNKFVGYE----------------------- 451

Query: 485 TNGVSSIVKAIVQQ--GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG-IR 540
                + +KA+  +   E+ +   SG    V+ ++TPFYAE+GGQ+GD G   I +G +R
Sbjct: 452 KTSHKTKIKALFDEEFNEVDKLNGSGW---VMLEETPFYAESGGQVGDRGELRIENGELR 508

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + + D +K  E    + + VE+  L+    ++  +D ++RR+++ +HSATHLLH AL  +
Sbjct: 509 INVVDTKKFDE---RNLSKVEKAKLKVGDEVLAVVD-ESRREIAKHHSATHLLHSALRKV 564

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H++Q GS +  + LRFD TH K ++  EL  IE+ VN +IA+        M+ ++A 
Sbjct: 565 LGEHITQAGSLVEANRLRFDFTHPKALSKEELNKIEEMVNRVIARGFEGEVSEMSIDEAK 624

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRVV       G  S  LCGGTHV +T EI   YIV ES + AG+
Sbjct: 625 KLGAMALFGEKYGDIVRVVKF-----GDFSIELCGGTHVKNTSEIGSFYIVKESGVSAGV 679

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G  A  +     + ++ L S    ++ N + +  E  +E  K      K   Q
Sbjct: 680 RRIEAVVGYSAYEYGKNYRDLVEELKS---KNKTNDLDKFIEKQKEEIKKLKEEIKSLKQ 736

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
             V+++       +NF   +I  +D+  L+ +   L+ ++ + +  L+G +K K   V +
Sbjct: 737 AAVKEIKPINKDGINF---VIERIDNANLREIATDLKGRVDNLVTFLIGENKGKVNFVAV 793

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              +D+     A DL +  A ++ GG GGG+P  AQ GG +  + D+ I  V
Sbjct: 794 SKVKDI----KAGDLIKEFAPIV-GGKGGGKPDFAQGGGKDIERIDEVIKKV 840


>gi|313648345|gb|EFS12789.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
          Length = 784

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 353/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   ID   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADIDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IMN E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMNLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|300815902|ref|ZP_07096126.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300531831|gb|EFK52893.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1]
          Length = 784

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 354/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPGALASVKGWV 779


>gi|300975107|ref|ZP_07172874.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300308788|gb|EFJ63308.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1]
          Length = 784

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 352/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    E+
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|315289216|gb|EFU48614.1| alanyl-tRNA synthetase [Escherichia coli MS 110-3]
          Length = 784

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 496/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNESRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F+ A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|300919279|ref|ZP_07135796.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300413634|gb|EFJ96944.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 784

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQTDVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|300820470|ref|ZP_07100621.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300906808|ref|ZP_07124489.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300924257|ref|ZP_07140242.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|301305420|ref|ZP_07211514.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|301326280|ref|ZP_07219656.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|309795155|ref|ZP_07689574.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|300401409|gb|EFJ84947.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300419533|gb|EFK02844.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300526734|gb|EFK47803.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300839340|gb|EFK67100.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300847020|gb|EFK74780.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|308121126|gb|EFO58388.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|315254472|gb|EFU34440.1| alanyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|323154906|gb|EFZ41098.1| alanyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323159803|gb|EFZ45775.1| alanyl-tRNA synthetase [Escherichia coli E128010]
 gi|323167133|gb|EFZ52851.1| alanyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323183219|gb|EFZ68616.1| alanyl-tRNA synthetase [Escherichia coli 1357]
 gi|324017048|gb|EGB86267.1| alanyl-tRNA synthetase [Escherichia coli MS 117-3]
          Length = 784

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|323188423|gb|EFZ73709.1| alanyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 784

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 496/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F+ A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKS 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|300976926|ref|ZP_07173678.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301027052|ref|ZP_07190429.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301049555|ref|ZP_07196510.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300298680|gb|EFJ55065.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300395217|gb|EFJ78755.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300409940|gb|EFJ93478.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|315293661|gb|EFU53013.1| alanyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315298718|gb|EFU57972.1| alanyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|324005757|gb|EGB74976.1| alanyl-tRNA synthetase [Escherichia coli MS 57-2]
          Length = 784

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|312965610|ref|ZP_07779840.1| alanyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312289759|gb|EFR17649.1| alanyl-tRNA synthetase [Escherichia coli 2362-75]
          Length = 784

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LNEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|310643515|ref|YP_003948273.1| alanyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309248465|gb|ADO58032.1| Alanyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 877

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/910 (40%), Positives = 517/910 (56%), Gaps = 74/910 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +LEFF+  GH + PS+ L+P  DP+L++ N+GM P K  F G+ KP    +   
Sbjct: 4   SEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K    D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TVY EDEEA+KLW +  GL A++II++   DNFW + E GPCGPC+EIF+D+GE 
Sbjct: 120 ERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDRGEA 176

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 177 YGSDMTDPEMYPGG--ENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   +N+D D+F+ LIQ +  + G+KY  N  + V  +VI DH+R+ +F I DG+LP+N
Sbjct: 235 LQNVDSNFDTDIFQPLIQKTAAMAGVKYNDNVDSDVALKVIADHVRTVTFAIGDGVLPSN 294

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ Y ++LG   P M  L+  +   MG  YPE++  +  I + +++E
Sbjct: 295 EGRGYVIRRLLRRAVRYGKMLGMNRPFMFELVETVGDIMGVYYPEVVDKRDFIIKVIKTE 354

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L  + +    +   +++G  AFKLYDT+G P D+ +D    +GL  
Sbjct: 355 EERFHETLTDGLAILADISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK- 413

Query: 413 IDIISFNQALEEQRSRAR-AH----SLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGS 466
           +D   F++A++EQR RAR AH    S+ +  G       +L +    + F+GY DL+  S
Sbjct: 414 VDREGFDEAMQEQRQRARDAHQDNASMKIQGG-------ALSDLAVKSDFVGYNDLVTES 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
           K +                        AIV    +VE    GQ  +VV D TPFYAE+GG
Sbjct: 467 KIV------------------------AIVYDDMLVESVSEGQSCQVVLDVTPFYAESGG 502

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G  +  ++  + K  +G  VH  +VE G L    ++   +D  +R ++  N
Sbjct: 503 QVSDHGLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKN 562

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN  I   
Sbjct: 563 HTATHLLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQ 622

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   +   ++A A GA AL G KY D VRVV V     G +S  LCGG HVS+T +I 
Sbjct: 623 LNVTIELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIG 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  +VSES I +G+RRIEA+TG+    ++ GQ E LK  A  +K     V  R+E + ++
Sbjct: 678 LFKLVSESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQ 737

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKK 819
            + L        LQ  +  +   ++ D       V  ++  +       L+++ D L+ K
Sbjct: 738 IKDLS--RENESLQSKLSAIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKSK 795

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + + ++ L     +K   V++V  E      +A  L +  A V  GGGGGGRP MAQ+GG
Sbjct: 796 LPAAVLALGAAMDDKVNFVVVVPAEHTKTGLHAGKLVKEIAAVC-GGGGGGRPDMAQAGG 854

Query: 880 PNGNKADQAI 889
            + +K D+A+
Sbjct: 855 KDASKLDEAL 864


>gi|222529322|ref|YP_002573204.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456169|gb|ACM60431.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 883

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 358/909 (39%), Positives = 537/909 (59%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +T
Sbjct: 4   STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L +
Sbjct: 64  TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE 
Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE 
Sbjct: 179 KGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID+ K +     +VTG  Y  +    V+ RVI DH+R + F+I DGILP+NEGRG
Sbjct: 239 DSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ RF
Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D GL +L+  +  L K++  +LNG++AFK+YDT+G PLD+ ++I   +G+  ID  
Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +++Q+ RARA    L +   + I   + E    T F+GYD L      K++ K+L
Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------KQEAKIL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                I L N   +  K         EE V      V+ D+TPFYAE+GGQ+ D G   G
Sbjct: 471 ----KIFLDNEEPAYAK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH A
Sbjct: 514 EGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLAAMKNHTATHLLHSA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H  Q+GS +TPD LRFD  H +P++  +L  IE+ VN+II Q +PV   + + 
Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEEMVNNIIQQAIPVEKIVTDL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS+
Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L++   
Sbjct: 689 AAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEIE 748

Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830
           K KL +   +LS    K  D      I++   + ++   K + D +++K    I++ + +
Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKEKDSKAIVLNI-L 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
            +  K +VL+  +++ + +   VD  ++  ++    GG GGGRP  AQ GG + +K D A
Sbjct: 808 EQSSKVTVLMSCSKEAVKK--GVDCGKVVKEICSVLGGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 VQTAENILK 874


>gi|332088620|gb|EGI93733.1| alanyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 784

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|327251414|gb|EGE63100.1| alanyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 784

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVNFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|289549314|ref|YP_003474302.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182931|gb|ADC90175.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 864

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 366/898 (40%), Positives = 524/898 (58%), Gaps = 49/898 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + S+ LIP  DPTL+F N+GMVPFKN+F G EK  Y    + 
Sbjct: 4   NEIRERFLSFFERKGHTRVRSAPLIPEGDPTLLFVNAGMVPFKNVFLGLEKRPYTRAVSC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L + R
Sbjct: 64  QKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKREAILYAWEFLTQELGLPENR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++VY +DEEA ++W +  GL  +++ R+   DNFW M E GPCGP SEI+ ++     
Sbjct: 124 LWVSVYKDDEEALRIWTEEVGLPEERVWRMGEEDNFWQMGEVGPCGPSSEIYVER----- 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                SSE  ER++EIWNLVFMQ+ +        LP  SIDTGMGLER+A+VLQ    N+
Sbjct: 179 ----DSSE--ERFLEIWNLVFMQYNRDPSGHLHPLPHPSIDTGMGLERIASVLQNTPTNF 232

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           + DL + ++   E++TG  Y  + +  V  RVI DHLR+ +F +ADG++ +N GRGYVLR
Sbjct: 233 ETDLLRPILAFGEEITGKAYGQDYLTDVALRVIADHLRALTFAVADGVIFSNTGRGYVLR 292

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +   LG  EP +   +  +   M  AYPELIQAK  ++  ++ E+ERF +TL
Sbjct: 293 RILRRALRFGYKLGVYEPFLYKGVDTVVRVMKDAYPELIQAKEYVKGLIKVEEERFLQTL 352

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
            RG+  ++ +L    K  +L+G   F +YDT+G PLD+++++   +GL  ID+  F + +
Sbjct: 353 RRGMPAVEELLQKGEKTGVLDGKDVFTIYDTYGFPLDLLEEMAREKGLT-IDMEGFEREM 411

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             QR RAR H   + +   + ++  LKE    ++F+GY   + S F K            
Sbjct: 412 NLQRERARKH-FKIEAKQIKPVYSHLKELGKTSRFVGYQ--QYSSFTK------------ 456

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                    V AIV+ G++V E   G+K E+V ++TPFYAE GGQ+GDTG   G      
Sbjct: 457 ---------VLAIVKDGQLVSELREGEKGEIVIEETPFYAEGGGQVGDTGIIEGMEGVFH 507

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D Q   EG+ +H  +V +G ++    ++  ID + R  +  NH+ATHLLH AL  +LG
Sbjct: 508 VEDTQSPTEGVILHIGVVTKGRIKVGDEVLAQIDAERREDIRRNHTATHLLHAALRYVLG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS ++   LRFD THS P+   E+K IE+ VN  I +N PV+   M+   AI+S
Sbjct: 568 DHVRQAGSLVSDKYLRFDFTHSSPLKEEEIKKIEELVNQQIMKNEPVIVEEMDYRTAISS 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY +RVRV+S      G  S  LCGGTHV  TG+I    I+S+ S+ AG+RR
Sbjct: 628 GAIAIFEEKYGERVRVIS-----AGSFSKELCGGTHVDRTGDIGYFKIISQESVGAGVRR 682

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ----LIHAKRK 778
           I A TG+ A      +   LK LA  L    GN++  VE++ E  + L+     +  K  
Sbjct: 683 IVAKTGRWAVEEAYREHILLKELAEHLGTDPGNLLSVVEKLEERVKLLEREKSELELKLL 742

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +   E L    I  VN    ++   D   L+ + D ++ K  S +I L  +  E K S 
Sbjct: 743 QEKLKEALKKESINGVNLYWGMVENTDQSALRQMADQIRSKDSSAVIFLASVKGE-KLST 801

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           L+ V+++L  + +AVD+ +    +L GGGGGGR  +AQ GG   +    A+  + + L
Sbjct: 802 LVAVSKNLTHKLSAVDIVKQIGPIL-GGGGGGREDLAQGGGTKPDAFPTAVEKLRAIL 858


>gi|315645820|ref|ZP_07898941.1| alanyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315278581|gb|EFU41895.1| alanyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 875

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 524/916 (57%), Gaps = 68/916 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +   
Sbjct: 4   SEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K    D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY EDEEAFKLW +  GL   +II++   DNFW + E GPCGPC+EIF+D+GE 
Sbjct: 120 EKLSVTVYPEDEEAFKLWNEKIGLPESRIIKL--QDNFWEIGE-GPCGPCTEIFYDRGEE 176

Query: 183 IPGGLPGSS----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
              G P S      E ER++E+WNLVF QF          LP  +IDTG GLER A++LQ
Sbjct: 177 YGKGTPESEMFPGGENERWLEVWNLVFTQFNLNKDGSYTPLPNKNIDTGAGLERFASILQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF+ +IQ + ++ G+KY  +    V  +VI DH+R+  F + DG+LP+NEG
Sbjct: 237 NVDSNFDTDLFQPIIQRTAELAGVKYNDSPEYDVALKVIADHIRTVVFAVGDGVLPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +E+E
Sbjct: 297 RGYVIRRLLRRAVRYGKVLGLDKPFMYTLTETVGDIMGVYYPEVVEKRAFIEKVVATEEE 356

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F KTL  GL +L  V +   K    +++G  AFKLYDT+G P D+ +D     GL  +D
Sbjct: 357 QFHKTLSDGLGILAEVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASENGLT-VD 415

Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKF 468
              F+ A+EEQR RARA      S+ +  G      +++K     ++F+GY D +R +K 
Sbjct: 416 REGFDAAMEEQRDRARAARHETESMKIQGGVLSD--YTVK-----SEFVGYNDTVREAKV 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +                        AIV      +    GQ  +V+ D TPFYAE+GGQ+
Sbjct: 469 L------------------------AIVSDDSFADSVSEGQTCQVILDATPFYAESGGQV 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G  +R ++  + K   G  VH   VE G L+   ++   ++   R  +  NH+
Sbjct: 505 SDQGVLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVTAQVNASMRNDIVKNHT 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++P
Sbjct: 565 ATHLLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELGDIERRVNEQVWKSIP 624

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV      ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I + 
Sbjct: 625 VVIERKGIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVGNTSQIGIF 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ ES I +G+RRIEA+TG+ A  HL  Q + LK  A  LK +  +V  R+E + ++ +
Sbjct: 680 KLLGESGIGSGVRRIEAVTGRYAYEHLEEQLDLLKQAAGLLKSNLTDVPKRIEGLNQQVK 739

Query: 769 KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823
            L   +   + +L   + S    K+  V     +  EV +     L+ + D L+ K+   
Sbjct: 740 DLARENESLQGKLGAIEASQLTDKVKQVGNTPLLAVEVQAGSMDGLRGIADELKGKLPDA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L G   + K + ++ V +DL+ + ++A  L +  A V  GGGGGGRP MAQ+GG + 
Sbjct: 800 ILVL-GSKADDKVNFVVAVPQDLVKKGYHAGKLVKEVASVC-GGGGGGRPDMAQAGGKDA 857

Query: 883 NKADQAIAGVASFLKK 898
           +K  QA+      + K
Sbjct: 858 SKLAQALQHAEELVAK 873


>gi|303326376|ref|ZP_07356819.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302864292|gb|EFL87223.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 892

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 371/918 (40%), Positives = 530/918 (57%), Gaps = 46/918 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF ++ HE++PS  LIP NDP+L+FTN+GMV FK +F G+EK  Y  
Sbjct: 1   MLTAQEIRRRYLDFFLRHRHEIVPSGPLIPPNDPSLLFTNAGMVQFKKLFLGEEKRAYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  AW  +T+E  L
Sbjct: 61  AASCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAIAWAWQFVTEELQL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+ ED+EA ++WK ++GL+  +IIR+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKEKLWVTVFREDDEAAEIWKDVAGLTDARIIRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180

Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E   C P    G   + +R++EIWNLVF QF+Q     R +L   +IDTGMGLER+A V 
Sbjct: 181 EDMSCGPDCGIGKC-DCDRFLEIWNLVFTQFDQAADGSRALLAAPNIDTGMGLERIAAVC 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNI-VNHRVIVDHLRSSSFLIADGIL 291
           Q K +N+D DLF+ +IQ +  + G+ Y     + N++    RVI DH RS++FLIA+G+L
Sbjct: 240 QGKRSNFDCDLFQEIIQYAAGLAGVAYSFSAPDTNDVDTALRVIADHSRSAAFLIAEGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRR++RRA+ +A L+G  EP M  +   +   MG AYP+L+++   I+  +
Sbjct: 300 PSNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGEAYPDLLESADFIDRAV 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E++RF  TL++GL LL+  L  L      ++ G   FKLYDT+G PLDI+ D+   RG
Sbjct: 360 FEEEQRFSLTLEKGLHLLEEELQRLEAAGQTVIPGAFCFKLYDTYGFPLDIVTDVAGKRG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHS-----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               D   F   + EQR RAR H      LG G+G  +  +  L +    + F+GY+ L 
Sbjct: 420 FTA-DGSGFEAHMREQRERAREHQKKGGLLGQGAGEGDAAFKKLADDGLRSVFVGYESLT 478

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAE 523
                                   +S V A++  G + V+    G+    V ++TPFY E
Sbjct: 479 -----------------------AASPVTALLDAGGVPVDHLGEGETGFAVTEKTPFYGE 515

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ GD G          +   +K A  + VH   V RG +       L++D  +R+  
Sbjct: 516 SGGQAGDAGLLAVVSGEAGVLTARKPAPDLIVHEIEVLRGEVHLGQEATLSVDADSRQST 575

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ THLLH AL   LG+HV Q GS +    LRFD +H   +T  EL ++E +VN  I
Sbjct: 576 ARNHTCTHLLHAALRRTLGTHVKQAGSLVDSRRLRFDFSHIAALTPEELAAVERDVNRAI 635

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +LPV  R M RE+A+A GA AL G KY + VRV++V  E     S  LCGGTH+S TG
Sbjct: 636 MADLPVAAREMPREEALAGGAMALFGEKYGETVRVLTVGCEGREPESMELCGGTHLSRTG 695

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +     IV+E+ + AG RRIEA+TG  A    + Q  +  +LA  LK   G +  RV+ +
Sbjct: 696 QAGSFLIVAETGVAAGTRRIEAVTGWNAYGLAVEQRAEAAALAGLLKSKPGQLAERVQTL 755

Query: 764 WEEYRKLQLIHAKRKLQ-LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             E +K++    K     +   DL     +I  V  ++  +  V  K L+ +MD ++ ++
Sbjct: 756 QTEVKKMRKASEKAAAAPVTGADLLRRAEEINGVRLLAARLENVPVKALREIMDDVRSRL 815

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S  +  +   +E K  +L+ V++DL  RF A  L +       GG GGGRP +AQ+GG 
Sbjct: 816 SSAGVACLATVEEGKVGLLLYVSKDLHGRFTAPALIK-EVAAPCGGAGGGRPDLAQAGGT 874

Query: 881 NGNKADQAIAGVASFLKK 898
                D+A A + + ++K
Sbjct: 875 KPEGIDEAFAVLKTLIEK 892


>gi|300899932|ref|ZP_07118138.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300356519|gb|EFJ72389.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1]
          Length = 784

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGTNFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|300930550|ref|ZP_07145945.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300947031|ref|ZP_07161254.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300954931|ref|ZP_07167347.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301645328|ref|ZP_07245276.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312973095|ref|ZP_07787268.1| alanyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|300318120|gb|EFJ67904.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300453345|gb|EFK16965.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300461571|gb|EFK25064.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|301076398|gb|EFK91204.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|310333037|gb|EFQ00251.1| alanyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|315615081|gb|EFU95718.1| alanyl-tRNA synthetase [Escherichia coli 3431]
          Length = 784

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|309786227|ref|ZP_07680855.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308925972|gb|EFP71451.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 784

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ   VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|300941066|ref|ZP_07155582.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300454193|gb|EFK17686.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1]
          Length = 784

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|319892672|ref|YP_004149547.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162368|gb|ADV05911.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 876

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 364/917 (39%), Positives = 523/917 (57%), Gaps = 73/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKKPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT E    ++ 
Sbjct: 67  QKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSERWMAMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ LW  + GL+ D+IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDSAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q+   NY+ DLF  +I   E ++G KY  + +N V  +VI DH+R+ +F I+DG 
Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I   
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      +E + G+ AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           LA ID+ SFN  +E QR RAR A           ++   LKE    ++F+GY+       
Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV---LKEINTVSKFLGYEAFE---- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV+ GE V  A +G+ +  + DQTPFYA +GGQ+
Sbjct: 466 -------------------THAKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G        +Q+T+V K   G  +H  +V+ G +R    +  TID Q R  +  NHS
Sbjct: 507 ADKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  D LRFD +H  P+T+ E+K +E  VN+ I  ++P
Sbjct: 567 ATHLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIP 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + MN EDA A GA AL G KY D VRVV+++       S  LCGGTHV +T EI L 
Sbjct: 627 VEIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQ-----PFSIELCGGTHVRNTSEIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            I SES   AG+RRIEA+TGQ A  +L    ++  +L   +K  S   V+ +VE++    
Sbjct: 682 KITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNALKQQVKAKSDAQVIEKVEQLQYNE 741

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVD---SKELKSVMDALQKKI 820
           + L+     +   LN  +L    I D    +N MS +I+EV+   +K +++ MD  + K+
Sbjct: 742 KTLKQTIEDKNKALN--ELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKL 799

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           Q  II+L       K S++  V + L DR  A D+ +  A V+ GG GGGRP MAQ GG 
Sbjct: 800 QDSIIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGT 857

Query: 881 NGNKADQAIAGVASFLK 897
              K  +A+  + +++K
Sbjct: 858 EPGKITEALQFIKNYIK 874


>gi|167037465|ref|YP_001665043.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167040127|ref|YP_001663112.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300914211|ref|ZP_07131527.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307724554|ref|YP_003904305.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|320115879|ref|YP_004186038.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|205830277|sp|B0K994|SYA_THEP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830278|sp|B0K0Q1|SYA_THEPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|166854367|gb|ABY92776.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|166856299|gb|ABY94707.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|300889146|gb|EFK84292.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307581615|gb|ADN55014.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|319928970|gb|ADV79655.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 877

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 359/909 (39%), Positives = 546/909 (60%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     Q+  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I  K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +L   ++ L   GK  +L G  AFKLYDT+G PLD+ ++IL   G+  +D  
Sbjct: 361 ETIDQGLTILQDYINELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE+QR RAR+      S   + I+ +L +    T+F+GYD               
Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYD--------------- 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T   +S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    
Sbjct: 462 --------TYESNSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILEN 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + + +++ D +K  +  F+H   +ERG++     +   ID  +RR  + NH+ATHLLH A
Sbjct: 514 ENVLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       
Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+  GA AL   KY D+VRVV ++      +S  LCGGTHV +T EI +  IVSES++
Sbjct: 633 DEAVKEGAVALFTEKYGDKVRVVKIDD-----YSMELCGGTHVKNTNEIGIFKIVSESAV 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774
            AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  + +  ++  
Sbjct: 688 GAGLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQ 747

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K+   + +   +    ++ +  ++S+V   DS+ LK++ D L+ K+++  I+L   +
Sbjct: 748 LKIKMASILANSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKTAAIVLASST 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E KA  + + T+D++ +   +++  +  +V  +  G GGGRP MAQ  G N +K ++A+
Sbjct: 808 PE-KAIFVGMATKDVVQK--GINMGAVIKEVCKVSEGNGGGRPDMAQGTGKNPSKVEEAL 864

Query: 890 AGVASFLKK 898
                 +K+
Sbjct: 865 NKAIDIVKE 873


>gi|332087414|gb|EGI92542.1| alanyl-tRNA synthetase [Shigella boydii 5216-82]
          Length = 784

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM  E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMALEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|315638099|ref|ZP_07893284.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315481947|gb|EFU72566.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 844

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 364/899 (40%), Positives = 540/899 (60%), Gaps = 66/899 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IRT FL FF   GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+  +P     T+ Q
Sbjct: 3   IRTQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKERL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y+TV+++D+EA+ LW+  + +  ++I R    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175

Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               SSE+     G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + + K
Sbjct: 176 EHFHSSEDYMGGDGDRFLEIWNLVFMQYERSSDGTLSPLPKPSIDTGMGLERVYAIKEGK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N+D  LF  LI     + G  Y   +  ++RVI DH+RSS+FL+A G+    EGRGYV
Sbjct: 236 LSNFDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG  EP M  L+  LC  MG  Y  L + K +I+E ++ E+ERF  
Sbjct: 296 LRRILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEVIKEQIKLEEERFLS 355

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T+++G+ L +  L+      I +G++AFKLYDT+G PLD+ QD+L  +GL+ ID   F +
Sbjct: 356 TIEKGIELFNEELAK--TQNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFER 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ+ RA+A   G G       +  L E++G  +F+GY             +  C+  
Sbjct: 413 LMSEQKERAKAAWKGSGDKAVSGDFKILLERFGKNEFVGY------------TQKACE-- 458

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S I+  + +  ++ E+   GQ   V  D+TPFYA +GGQ+GD G  +G+   
Sbjct: 459 --------SQILALLDENFKMQEKLHKGQTGWVFLDKTPFYANSGGQVGDKGF-LGEN-- 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +I+D QK  E       I  +  L+ +  L+  ID   R Q++ +HSATHLLH+AL  I
Sbjct: 508 -EISDTQKFFE--LNLSKITAKNELKLDEKLLAHIDEGKREQIARHHSATHLLHYALRKI 564

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+H++Q GS +  + LRFD  H K +T  EL+ IE+ VN++I+ + P +   M+ +DA 
Sbjct: 565 LGAHIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAK 624

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL   KY ++VRV+S+        S  LCGGTHV+++ EI   +I+ ES + AG+
Sbjct: 625 KSGAIALFSEKYENKVRVLSLG------ESKELCGGTHVNNSAEIGSFFILKESGVSAGV 678

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+  + A ++     ++L+SL   +++   +++  + ++  E  KL     K +L+
Sbjct: 679 RRIEAVVSKAAHAYAKNALKELESLK--IELKNNDLLSGISKLKNEISKL-----KNELK 731

Query: 781 -LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
             N  +L    I  V      I+++++ ++K+++D  + + +  +I+L+   KE K S+ 
Sbjct: 732 NSNQNELKSENIKGVQI---CIAKIENGDIKAMIDHFKNQFEKAVILLIQ-EKEGKISLA 787

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             V    L    A +L +  A +L GG GGG+   A +GG +  K D+A+    SF++K
Sbjct: 788 AGVKNAPL---KAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842


>gi|323464290|gb|ADX76443.1| alanyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 876

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 366/919 (39%), Positives = 527/919 (57%), Gaps = 77/919 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKKPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT E    ++ 
Sbjct: 67  QKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSERWMAMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ LW  + GL+ D+IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDSAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q+   NY+ DLF  +I   E ++G KY  + +N V  +VI DH+R+ +F I+DG 
Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I   
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      +E + G+ AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           LA ID+ SFN  +E QR RAR A           ++   LKE    ++F+GY+       
Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV---LKEINTVSKFLGYEAFE---- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV+ GE V  A +G+ +  + DQTPFYA +GGQ+
Sbjct: 466 -------------------THAKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G        +Q+T+V K   G  +H  +V+ G +R    +  TID Q R  +  NHS
Sbjct: 507 ADKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  D LRFD +H  P+T+ E+K +E  VN+ I  ++P
Sbjct: 567 ATHLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIP 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + MN EDA A GA AL G KY D VRVV+++       S  LCGGTHV +T EI L 
Sbjct: 627 VEIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQ-----PFSIELCGGTHVRNTSEIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI-WEE 766
            I SES   AG+RRIEA+TGQ A  +L    ++   L   +K  S   V+ +VE++ + E
Sbjct: 682 KITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNVLKQQVKAKSDAQVIEKVEQLQYNE 741

Query: 767 YRKLQLIHAKRK----LQL-NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818
               Q I  K K    L++ N++D    ++  +N MS +I+EV+   +K +++ MD  + 
Sbjct: 742 KTLKQTIEDKNKALNELKMGNIKD----QVETINDMSVLITEVEVDNAKAMRTTMDDFKS 797

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K+Q  II+L       K S++  V + L DR  A D+ +  A V+ GG GGGRP MAQ G
Sbjct: 798 KLQDSIIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGG 855

Query: 879 GPNGNKADQAIAGVASFLK 897
           G    K  +A+  + +++K
Sbjct: 856 GTEPGKITEALQFIKNYIK 874


>gi|222824071|ref|YP_002575645.1| alanyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|222539293|gb|ACM64394.1| alanyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 845

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/888 (39%), Positives = 525/888 (59%), Gaps = 62/888 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +LEFF+  GHE+ PSS L+P +D TL+FTN+GMVPFKNIFTG+  +P     T+ Q
Sbjct: 3   IRKEYLEFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKNIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEILKLPKERL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+TV++ D+EA+ LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 YVTVHESDDEAYNLWQK--HIEKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGAEHFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER++ + + K +N+
Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVSAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I++  ++ G  Y   +  ++RVI DH+RSS FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPIIESIAKLCGKTYIYESGASYRVIADHIRSSVFLLAQGVGFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           MRRA+ +  LLG     M  L+  +C  MG  Y  L + K  I+E ++ E+ERF  T++ 
Sbjct: 300 MRRALRHGYLLGLKRAFMYELVDVVCELMGGHYTYLNEKKEFIKEQIKLEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L      +I +G+VAFKLYDT+G PLD+ QD+L  + L+ +D   FN+ ++E
Sbjct: 360 GIEIFNEELKKT--KDIFSGEVAFKLYDTYGFPLDLTQDMLREKNLS-VDEAKFNELMQE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q+ RA+A   G G       +  L EK+G   F GY+                       
Sbjct: 417 QKDRAKASWKGSGDKAVSGDFKVLLEKFGKNTFSGYENYEEK------------------ 458

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
               + I+  + +  +I+ EA +G    ++ ++TPFYA +GGQ  D G    +    ++ 
Sbjct: 459 ----TKIIAILDENFKIITEAKAGDIAWLMLEKTPFYATSGGQSADIGFINEN----EVL 510

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           D QK  + I +    +++  L+T   ++  ID + R Q++ +HSATHLLHHAL  ILGSH
Sbjct: 511 DTQKFFD-INLSQVKLKQN-LKTNDEVLACIDTKKREQIARHHSATHLLHHALREILGSH 568

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +SQ GS +  + LRFD TH K +   ELK IE  VN  I Q       I++  +A  SGA
Sbjct: 569 ISQAGSLVEHNKLRFDFTHPKALNKEELKQIEALVNTYIMQANEAKVEILSLNEAKKSGA 628

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL   KY ++VRV+++    G   S   CGGTHV ++ EI   YIV ES + AG+RRIE
Sbjct: 629 IALFSEKYQEKVRVLTL----GA--SKEFCGGTHVKNSSEIGSFYIVKESGVSAGVRRIE 682

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLN 782
           A+  + A  ++   +E LK L      +Q     ++ +I     KL  +++  K +L+ +
Sbjct: 683 AVVSKAALDYV---NENLKEL------NQAKEELKIHDILSYVAKLKNEIVSLKNELKNS 733

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +     K  ++N + + + ++DS ++K+++D  + K    +I+L+   +EK+  ++I  
Sbjct: 734 SKTELSSK--ELNGIQYCVQKIDSGDIKTMIDEFKNKFNKVVILLL---QEKEGKIIIAA 788

Query: 843 -TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +D      A  L +  A++L GG GGGR   A +GG + +K +QA+
Sbjct: 789 GVKDA--SLKAGALVKEIAQML-GGNGGGRDDFATAGGKDTSKIEQAL 833


>gi|306820448|ref|ZP_07454084.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551523|gb|EFM39478.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 880

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 344/912 (37%), Positives = 539/912 (59%), Gaps = 61/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +FL+FF+   H +  S SL+P ND +L+  N+GM P KN F G E P  + + T 
Sbjct: 7   NDIRKSFLDFFESKEHYVKNSFSLVPKNDKSLLLINAGMAPLKNYFLGIETPPAKRMATC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR G    D++N+G+T RH TFFEMLGNFSFG YFK  A   AW+ +TK   +D+ +
Sbjct: 67  QKCVRTG----DIENIGKTARHATFFEMLGNFSFGDYFKNEATAFAWEFVTKVLKMDEEK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGE-- 181
           L++TVY+ED+EA ++W+   G++ D+I+++   DNFW +    GPCGPCSEI+ D+GE  
Sbjct: 123 LWVTVYEEDDEALEIWRDKVGVNPDRIVKLGKEDNFWEIGNGQGPCGPCSEIYIDRGEEF 182

Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C PG       + +R++E WNLVF QF++Q       L   +IDTGMGLERMA 
Sbjct: 183 GCGHKDCKPGC------DCDRFLEFWNLVFTQFDKQVDGSYKKLEHPNIDTGMGLERMAC 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           ++Q   + +DID  K++     +++G KY+ +    V+ R+I DH+R+ +F+++DGI+P+
Sbjct: 237 IMQGVDSIFDIDTMKNIRDKVCEISGKKYQQDEKTDVSIRIITDHIRAITFMVSDGIVPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR+ RRAM +A+LLG  +  +  L   +       Y EL Q +  I + L+ 
Sbjct: 297 NEGRGYVLRRLARRAMRHAKLLGIEQKFIETLANVVIDVYQDGYEELGQNRDYINKVLKI 356

Query: 354 EDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+FG+T++ G+ +L+  +  S    +  +NG  AFKLYDT+G PL++  +I   +  +
Sbjct: 357 EEEKFGETIETGMNILNQYIADSQKANNSKINGQDAFKLYDTYGFPLELTLEIAEEKNCS 416

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            +DI  F   +E QR RAR A + G   G  ++I  SL      T+FIGY+ L       
Sbjct: 417 -VDIEEFENQMEMQRQRARNARAKGSDIGWKDEIS-SLDLSVKNTEFIGYEKL------- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           ED+ V+                  IV  G++ ++A  GQ++ ++FD+TPFYAE+GGQ+GD
Sbjct: 468 EDKAVIAD----------------IVIDGKLSDKAAQGQEIILIFDKTPFYAESGGQVGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG      + +Q+ +V K   G+F+HH  + +G L+    + L +D +NR     NH+AT
Sbjct: 512 TGLIKNATVEIQVNNVTKSTNGLFLHHCKLNKGELKKGDKVELLVDVKNRFATMRNHTAT 571

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG H+ Q GS ++PD LRFD  H   ++  EL  +E  VN+ I   + V 
Sbjct: 572 HLLHKALKVVLGDHIQQAGSLVSPDRLRFDFNHFAQVSKEELMKVEQLVNEQIYNAIDVQ 631

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T++M+ EDA  +GA +L   KY + VRV+S+     G  S   CGGTHV ++ EI +  I
Sbjct: 632 TQVMDIEDAKKTGAMSLFDEKYGETVRVLSI-----GEFSKEFCGGTHVKNSNEIGMFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  + +G+RRIEAITG    + ++ + E +++++S LK SQ N++ R  ++  E + L
Sbjct: 687 VSEGGVASGVRRIEAITGYSVYNFIVEKQELIENVSSTLKTSQDNLLKRASDLMAENKNL 746

Query: 771 Q-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q     +  A  K  ++    S  KI DVN +     +++   L+     +  K+++ ++
Sbjct: 747 QKKIKEVQSAGAKTDIDSVIKSAKKINDVNLVISSFEDMEDDILRDFAQNIIDKVENSVV 806

Query: 826 MLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +   ++ E +K + L +V ++L+ ++NA  + +  A V  GG GGG+P+MA +GG + +K
Sbjct: 807 VFSNVNTENQKLTFLCMVAKNLIPKYNAGKIVKEVAMVT-GGNGGGKPNMAMAGGKDVSK 865

Query: 885 ADQAIAGVASFL 896
             +A++     L
Sbjct: 866 IQEALSKAEEVL 877


>gi|308070327|ref|YP_003871932.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus
           polymyxa E681]
 gi|305859606|gb|ADM71394.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus
           polymyxa E681]
          Length = 877

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 362/906 (39%), Positives = 518/906 (57%), Gaps = 66/906 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +LEFF+  GH + PS+ L+P  DP+L++ N+GM P K  F G+ KP    +   
Sbjct: 4   SEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K    D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TVY EDEEA+KLW +  GL A++II++   DNFW + E GPCGPC+EIF+D+GE 
Sbjct: 120 ERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDRGEA 176

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 177 YGSDMTDPEMYPGG--ENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   +N+D D+F+ LIQ +  + G+KY  N  + V  +VI DH+R+ +F I DG+LP+N
Sbjct: 235 LQNVDSNFDTDIFQPLIQKTAAMAGVKYNENVDSDVALKVIADHVRTVAFAIGDGVLPSN 294

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ Y ++LG   P M  L+  +   MG  YPE++  +  I + +++E
Sbjct: 295 EGRGYVIRRLLRRAVRYGKMLGMNRPYMFELVETVGDVMGVYYPEVVDKRDFIIKVIKTE 354

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L  + +    +   +++G  AFKLYDT+G P D+ +D    +GL  
Sbjct: 355 EERFHETLTDGLAILSDISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK- 413

Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMK 470
           +D   F++A++EQR RAR AH     S + +    +L +    ++F+GY DL+  SK + 
Sbjct: 414 VDREGFDEAMQEQRKRARDAHQ---DSASMKIQGGALSDLAVKSEFVGYNDLVTESKIV- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                  AIV +  +V+    GQ  +VV D TPFYAE+GGQ+ D
Sbjct: 470 -----------------------AIVYEDVLVDSVSEGQSCQVVLDVTPFYAESGGQVSD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G  +  ++  + K  +G  VH  +VE G L    ++   +D  +R ++  NH+AT
Sbjct: 507 HGLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN  I   L V 
Sbjct: 567 HLLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLDVN 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +   ++A A GA AL G KY D VRVV V     G +S  LCGG HVS+T +I L  +
Sbjct: 627 IELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES I +G+RRIEA+TG+    ++ GQ E LK  A  +K     V  R+E + ++ + L
Sbjct: 682 VSESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDL 741

Query: 771 QLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                   LQ  +  +   ++ D       V  ++  +       L+++ D L+ K+ + 
Sbjct: 742 S--RENESLQSKLSVIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKGKLPAA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L     +K   V+ V  E      +A  L +  A V  GGGGGGRP MAQ+GG + +
Sbjct: 800 VLVLGAAMDDKVNFVVAVPAEYTKAGLHAGKLVKEIAAVC-GGGGGGRPDMAQAGGKDAS 858

Query: 884 KADQAI 889
           K D+A+
Sbjct: 859 KLDEAL 864


>gi|332179704|gb|AEE15393.1| alanyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 854

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 334/899 (37%), Positives = 524/899 (58%), Gaps = 60/899 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL +F++ GH +LPS SL+P  DPT++FT +GMVPFK  F G+E+P ++  TT QK
Sbjct: 6   IRRLFLNYFKERGHTVLPSFSLVP-EDPTILFTIAGMVPFKPYFLGREEPPFKRATTSQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++ VG+T RHHTFFEMLGNFSFG YFKE+AI  AW  +T+   L + RL+
Sbjct: 65  CLRT----NDIEEVGKTARHHTFFEMLGNFSFGDYFKEKAIPFAWVFVTEVLHLQKERLF 120

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           IT+Y +D+E++++W+ +  + A+KI R    DNFWS    GPCGPCSEI++D+GE     
Sbjct: 121 ITIYKDDDESYEIWRSLD-IPAEKIYRSGEKDNFWSAGPVGPCGPCSEIYYDRGENFGCK 179

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  S   + +R++EIWNLVFMQ+ +  +    +L K  IDTGMGLER+A+VLQ K +NY
Sbjct: 180 RPDCSPLCDCDRFLEIWNLVFMQYNRDEESNLTLLSKKGIDTGMGLERIASVLQGKDSNY 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           + DL   +I+    +TG++Y+G  I+  RV+ DHLR + F I+DG+LP+NEGRGYV+RR+
Sbjct: 240 ETDLIYPIIEKLSSITGIEYKGKGIIPLRVMSDHLRGAVFAISDGVLPSNEGRGYVVRRL 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ ++ L GY  P +   +P +      +YPEL + K  I + +RSE+E+F ++L  
Sbjct: 300 LRRALTFSHLSGYQTPFIYKAVPTVSNIYRHSYPELFEKKDYIIDAIRSEEEKFSQSLKD 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           GL + + ++  + KD I++G++AF LYDT+G P+++ ++ + A    G+DI  FN+ L +
Sbjct: 360 GLSMFNKLMPQIKKDGIISGEIAFLLYDTYGFPVELTKE-MAAEFNIGVDIEGFNELLMQ 418

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           +++ +R  S  +    T             ++F+GYD L      K + K+L        
Sbjct: 419 RKNLSRQGSQFVDEIITTSF---------TSEFVGYDNL------KTNSKIL-------- 455

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                     I +    V   ++G++  ++ ++TPFY E+GGQ+ D G  + +    ++T
Sbjct: 456 ---------GIYKNNNEVRSLLAGEEGYIILNKTPFYPESGGQVSDIGYIVSENSTFRVT 506

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            VQ++ + IF H   VE G       +   ID + RR  S NH+ TH+LH  L    G  
Sbjct: 507 SVQREKDAIF-HFGKVESGSFCAGDYVEAEIDIKRRRLSSSNHTCTHILHAVLREKFGET 565

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q GS ++ + LRFD   S  ++  ++  IE +VN II +N  V+ + M+ EDAI SGA
Sbjct: 566 VKQKGSFVSDELLRFDF-FSNALSDEDIADIERSVNKIIMENFKVIVQEMDLEDAIKSGA 624

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL   KY  RVRVVS++       SS LCGGTHV  TGEI    IV + SI + +RRIE
Sbjct: 625 IALFSDKYKSRVRVVSID-----SVSSELCGGTHVKMTGEIGTFVIVKQESIASSVRRIE 679

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQG------NVVGRVEEIWEEYRKLQLIHAKRK 778
           A TG +A  +   + + L  +   L  S        +++   +E  +  R++ + +    
Sbjct: 680 AFTGLKALKYFQQKRKDLDEIDKILDASGSPLKKSLSILKDFDETKKRLREVTMNY---- 735

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           L++   +L+  +I   +  S  +    S+++   +D  + +  + I+ +  ++ +  AS 
Sbjct: 736 LRMKANNLTVEEIGKFSLYSENLDGFASEDMLFFVDLARNRFDNLILFIYSVNNQ-SASF 794

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++ +++ L    +A +LA++   V  GGG GGR  ++Q G  N NK + AI  +  FLK
Sbjct: 795 VLSISDKLSQSLSAKELAKVITSVT-GGGAGGRDKVSQGGIKNINKLNSAIIALKDFLK 852


>gi|312135147|ref|YP_004002485.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311775198|gb|ADQ04685.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 879

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 349/905 (38%), Positives = 530/905 (58%), Gaps = 52/905 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +TT QK
Sbjct: 6   IREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRITTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L + RL+
Sbjct: 66  CIRTP----DIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPRERLW 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+GE    G
Sbjct: 122 VTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEDKGCG 180

Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE  + +
Sbjct: 181 KPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEVDSLF 240

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           DID+ K +     +VT  +Y  +    V+ RVI DH+R   F+I DGILP+NEGRGYVLR
Sbjct: 241 DIDIVKAIRDKVCEVTSYEYRKDTEKDVSVRVITDHIRGIVFMIGDGILPSNEGRGYVLR 300

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA  + R+LG  E  +  ++  +     ++YPEL+Q    I++ L +E+ RF +T+
Sbjct: 301 RLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNSYPELVQKVEYIKKVLYNEESRFNQTI 360

Query: 363 DRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           D GL +L+  +  L K++  ILNG++AFK+YDT+G PLD+ ++I   +G+  +D   F++
Sbjct: 361 DVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQERFDE 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++Q+ RARA    L +   + I   + E    T F+GY+ L      K++ K+L    
Sbjct: 420 LMQQQKERARAAQKELENVGWKDINIVIDEDI-ETVFVGYETL------KQESKIL---- 468

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                         I  + E V  A       V+ D+TPFYAE+GGQ+ D G   G+G+ 
Sbjct: 469 -------------KIFMESEEVAYAKEEDVCFVILDKTPFYAESGGQIADKGILEGEGVL 515

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ DV+K  +G  +H   V +G +    S+V  +D   R     NH+ATHLLH AL  I
Sbjct: 516 AEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEDLRFATMKNHTATHLLHSALRKI 575

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H  Q+GS ++PD LRFD  H +P++  ++  IE  VN++I Q +PV   + + + A+
Sbjct: 576 LGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDLDSAL 635

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL   KY++ VRV+ ++       S  LCGGTHV +TG+I +  I+SESS+ AG+
Sbjct: 636 RMGAIALFDEKYSNLVRVIKIDD-----FSMELCGGTHVDNTGQIGMFKIISESSVAAGV 690

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           RRIEAITG +    ++   + LK L S +K S    +V ++E++  + + L+    K KL
Sbjct: 691 RRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIVSKIEQLENKIKNLENEVEKYKL 750

Query: 780 QLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGISKEK 834
            +   +LS    K  D      I++  ++ ++   K + D ++++    I++ + + +  
Sbjct: 751 LVVENELSLLFSKAIDYGEFKLIVNRKETDDMDYVKLLTDKIKERDSKAIVLNI-LEQGN 809

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K +VL+  +++ + +   VD  ++  +V    GG GGGRP  AQ GG +  K D A+   
Sbjct: 810 KVTVLMSCSKEAVKK--GVDCGKVVREVCSVVGGKGGGRPDFAQGGGNDILKIDIAVQTA 867

Query: 893 ASFLK 897
            + LK
Sbjct: 868 ENILK 872


>gi|325290063|ref|YP_004266244.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965464|gb|ADY56243.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 346/910 (38%), Positives = 527/910 (57%), Gaps = 52/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL FFQ+ GH L  S+SLIP NDPTL+ T +GMVPFK  F  Q +P +  
Sbjct: 1   MYTGDQLREMFLNFFQEKGHRLQASASLIPKNDPTLLLTVAGMVPFKPYFMRQVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L
Sbjct: 61  ATTCQKCVRT----PDLERVGKTARHHTFFEMLGNFSFGDYFKEEAITWAWEYVTEVIKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ ED EA ++W   +G+S D+++     +NFW+    GPCGPCSEI+ D G
Sbjct: 117 PADQLWITVHPEDHEAREIWINKAGVSPDRLL--DDEENFWAAGPVGPCGPCSEIYVDLG 174

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +R++EIWNLVFMQ+ +        LP+ +IDTGMGLER+ +V+Q
Sbjct: 175 EARGCGKPDCAIGCDCDRFLEIWNLVFMQYTRDESGTLTPLPRQNIDTGMGLERITSVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    ++ G+ Y+ +   +   +VI DH R+ +F++ DGI P+++G
Sbjct: 235 GVVSNFDTDLFIPIINKIAEIAGINYKDDPKKDTALKVISDHTRAIAFMLGDGIRPSSDG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARL+G  +P +  +   + ++   AYPEL + +  I   L+ E++
Sbjct: 295 RGYVLRRILRRAVRYARLIGIEKPFLEQIFAVIQSKYAHAYPELKENENFILNHLKLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L K  +  +NG  AF LY+T+G P+++ ++IL   G+  +D
Sbjct: 355 NFQATLEQGTQILQDKVESLKKQGLQEINGTDAFHLYETYGFPVELTEEILAEEGIT-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + ++  A EE R  A+  S  + S        +   + G T+F+GY  L    F      
Sbjct: 414 MENYQLAFEEHRKAAKEQSRQMVSSAENMALINKARELGKTEFVGYRQLSTETF------ 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+    E V  A  G++V  +  +TPFYAE+GGQ+ D G  
Sbjct: 468 -----------------VAALFSGEEEVASAGEGEEVLCLLPRTPFYAESGGQVADKGWI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    Q+ +V+K  +G F H   +  G+L+ + ++V  +D + R+ ++ +HS+THLLH
Sbjct: 511 RSERAEAQVMEVRKLPDGSFCHRLRITSGVLKVQDTVVAEVDGEIRKSIAAHHSSTHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS ++ + LRFD +H   +++ EL ++E+ +N  I   L V    M
Sbjct: 571 TALRKVLGQHVQQAGSLVSEERLRFDFSHFSAMSTEELNTVEEEINRQIRGALSVNIAEM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             EDA A GA AL G KY D VRVV +     G  S+ LCGGTHV +TGEI ++ I+SES
Sbjct: 631 CMEDAKAQGAIALFGEKYGDEVRVVRM-----GEFSTELCGGTHVQNTGEIGIVKILSES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-------QGNVVGRVEEIWEEY 767
            I AG+RRIEA+ G++A +++   +E L+ +A  LK +        G + G++++   E 
Sbjct: 686 GIGAGLRRIEAVAGKQALAYIHSLEESLEEIAVILKAAPGESLKKAGQMAGQLKDAEREI 745

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            KL    +K + + N+ D    +I  V  ++  +   D   L+ + D L+ +++ G+I+L
Sbjct: 746 EKLNARLSKYEAE-NILD-KVQEIQGVKVLAAKVQAPDMDALRKMSDTLKDRLKEGVIIL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G S E K   + VV+   L+  +A  + +  A    GG GGGRP MAQ+GG + +K ++
Sbjct: 804 -GASAEGKVHFVSVVSPSGLNGLHAGKIIKEVA-AFTGGSGGGRPDMAQAGGKDPSKIEE 861

Query: 888 AIAGVASFLK 897
           A+A V + +K
Sbjct: 862 ALAKVPAIIK 871


>gi|57506111|ref|ZP_00372033.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015595|gb|EAL52387.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 844

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 362/898 (40%), Positives = 538/898 (59%), Gaps = 64/898 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL FF   GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+  +P     T+ Q
Sbjct: 3   IRAQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKERL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y+TV+++D+EA+ LW+  + +  ++I R    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175

Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               SSE+     G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + + K
Sbjct: 176 EHFHSSEDYMGGDGDRFLEIWNLVFMQYERSSNGTLSPLPKPSIDTGMGLERVYAIKEGK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N+D  LF  LI     + G  Y   +  ++RVI DH+RSS+FL+A G+    EGRGYV
Sbjct: 236 LSNFDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG  EP M  L+  LC  MG  Y  L + K  I+E ++ E+ERF  
Sbjct: 296 LRRILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEAIKEQIKLEEERFLS 355

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T+++G+ L +  L+      I +G++AFKLYDT+G PLD+ QD+L  +GL+ ID   F +
Sbjct: 356 TIEKGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFER 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ+ RA+A   G G       +  L E++G  +F+GY             +  C+  
Sbjct: 413 LMSEQKERAKAAWKGSGDKVVSGDFKILLERFGKNEFVGY------------TQKACE-- 458

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S I+  + +  ++ E+  +GQ   V  D+TPFYA +GGQ+GD G  +G+   
Sbjct: 459 --------SQILALLDENFKMQEKLHNGQTGWVFLDKTPFYANSGGQVGDKGF-LGEN-- 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +I+D QK  E       I  +  L+ +  L+  ID   R Q++ +HSATHLLH+AL  I
Sbjct: 508 -EISDTQKFFE--LNLSKITAKNELKLDEKLLAHIDEDKREQIARHHSATHLLHYALRKI 564

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+H++Q GS +  + LRFD  H K +T  EL+ IE+ VN++I+ + P +   M+ +DA 
Sbjct: 565 LGTHIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAK 624

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL   KY  +VRV+S+        S  LCGGTHV+++ EI   +I+ ES + AG+
Sbjct: 625 KSGAIALFSEKYESKVRVLSLG------ESKELCGGTHVNNSAEIGSFFILKESGVSAGV 678

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+  + A ++     ++L+SL   +++   +++  + ++  E  KL       K +
Sbjct: 679 RRIEAVVSKAAHTYAKNALKELESLK--IELKNNDLLSGISKLKNEISKL-------KNE 729

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           L   + +  K  +V  +   I++V++ ++K+++D  + + +  +I+L+   KE K S+  
Sbjct: 730 LKNSNQNELKSENVKGVQICIAKVENGDIKAMIDHFKNQFEKAVILLIQ-EKEGKISLAA 788

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            V    L    A +L +  A +L GG GGG+   A +GG +  K D+A+    SF++K
Sbjct: 789 GVKNAPL---KAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842


>gi|261405443|ref|YP_003241684.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281906|gb|ACX63877.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 875

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 359/907 (39%), Positives = 524/907 (57%), Gaps = 68/907 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +   
Sbjct: 4   SEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K    D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY EDEEA+KLW +  GL  ++II++   DNFW + E GPCGPC+EIF+D+GE 
Sbjct: 120 EKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDRGEG 176

Query: 183 IPGGLPGSS----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                P S      E ER++E+WNLVF QF          LP  +IDTG GLER A++LQ
Sbjct: 177 YDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF+ +IQ + ++ G+KY       +  +VI DH+R+ +F + DG+LP+NEG
Sbjct: 237 NVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +E+E
Sbjct: 297 RGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIATEEE 356

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F KTL  GL +L  V +   K    +++G+ AFKLYDT+G P D+ +D     GL  +D
Sbjct: 357 QFHKTLSDGLNILADVSAEAKKQGKSVISGNDAFKLYDTYGFPFDLTEDYASEHGLT-VD 415

Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKF 468
              F+ A++EQR RARA      S+ +  G      +++K     ++F+GY D +  +K 
Sbjct: 416 REGFDAAMKEQRDRARAARHETESMKVQGGVLSD--YTVK-----SEFVGYNDTVSEAKV 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +                        AIV      +    G+  +V+ D TPFYAE+GGQ+
Sbjct: 469 L------------------------AIVSGDSFADSVSEGETCQVILDVTPFYAESGGQV 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G  +R ++  + K   G  VH   VE G L+   ++   +D   R  +  NH+
Sbjct: 505 SDQGMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDSAMRNDIVKNHT 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++P
Sbjct: 565 ATHLLHKALKEVLGEHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVP 624

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV      ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I + 
Sbjct: 625 VVIERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIF 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ ES I +G+RRIEA+TG+ A  HL GQ + LK  A  LK +  +V  R+E + ++ +
Sbjct: 680 KLLGESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVK 739

Query: 769 KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823
            L   +   + +L   + S    K+  V   S + +EV +     L+ + D L+ K+   
Sbjct: 740 DLARENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPET 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L G     K + ++ V ++L+ + ++A  L +  A V  GGGGGGRP MAQ+GG + 
Sbjct: 800 ILVL-GSKAGDKVNFVVAVPQELVKQGYHAGKLVKEVASVC-GGGGGGRPDMAQAGGKDA 857

Query: 883 NKADQAI 889
           +K  QA+
Sbjct: 858 SKLAQAL 864


>gi|312622432|ref|YP_004024045.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202899|gb|ADQ46226.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 883

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 355/909 (39%), Positives = 536/909 (58%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +T
Sbjct: 4   STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L +
Sbjct: 64  TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE 
Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE 
Sbjct: 179 KGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID+ K +     +VTG  Y  +    V+ RVI DH+R + F+I DGILP+NEGRG
Sbjct: 239 DSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+L   E  +  ++  +     + YPEL+Q    I++ L +E+ RF
Sbjct: 299 YVLRRLIRRAARHGRMLDKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D GL +L+  +  L K++  +LNG++AFK+YDT+G PLD+ ++I   +G+  ID  
Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +++Q+ RARA    L +   + I   + E    T F+GYD L      K++ K+L
Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------KQEAKIL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                I L N  ++  K         EE V      V+ D+TPFYAE+GGQ+ D G   G
Sbjct: 471 ----KIFLDNEETAYAK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH A
Sbjct: 514 EGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLATMKNHTATHLLHSA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H  Q+GS +TPD LRFD  H +P++  +L  IE  +N+II Q +PV   + + 
Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEKMINNIIQQAIPVEKIVTDL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS+
Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L++   
Sbjct: 689 AAGVRRIEAITGNKVYGFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEIE 748

Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830
           K KL +   +LS    K  D      I++   + ++   K + D ++++    I++ + +
Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKERDSKAIVLNI-L 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
            +  K +VL+  +++ + +   VD  ++  ++    GG GGGRP  AQ GG + +K D A
Sbjct: 808 EQSSKVTVLMSCSKEAVKK--GVDCGKVVKEICSVLGGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|297620478|ref|YP_003708615.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375779|gb|ADI37609.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 870

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 353/906 (38%), Positives = 524/906 (57%), Gaps = 51/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  F+ +F++NGH  +PSS ++P +DPTL+F N+GM  FK+IF G+    Y+   
Sbjct: 2   NTQEIRRKFINYFRENGHTHVPSSPILPHDDPTLLFINAGMNQFKDIFLGKSVRDYKRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R GGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW++ T  F+LD 
Sbjct: 62  TSQKCIRVGGKHNDLENVGHTLRHLTFFEMLGNFSFGDYFKKEAIRFAWEVSTTVFELDP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++ TV+ ED+EA+++WK+   +  +KI R     NFWSM +TGPCGPCSE+ +D+G  
Sbjct: 122 ERIWPTVFREDDEAYEIWKEY--VPEEKITRFDEKQNFWSMGDTGPCGPCSELLYDRGPK 179

Query: 183 IPGG-LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                 P   E+ ERY+E WNLVFMQ+ +  +     LPK SIDTG GLER+ ++  +  
Sbjct: 180 YGNAKTPLEDEKEERYMEFWNLVFMQYNRDEEGVMHPLPKPSIDTGSGLERVVSIKMDVE 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           + YD D+ + LI   E+++G+ Y+G +       RVI DH+R  +F IADG+ P+N  RG
Sbjct: 240 SVYDTDVLRALITRVEEISGIGYDGADKEKAPAFRVIADHIRCLAFAIADGVQPSNVDRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+++RRA+ Y R+LG   P +  L+P L   MGS YPEL Q++  I E L +E+E F
Sbjct: 300 YVLRKVLRRAVRYGRMLGLDRPFLADLVPLLIELMGSDYPELKQSENRIGEILTTEEENF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            +TL RG  +L+ ++    K+   + G+ AFKL DT+G PL+ +  I     L  +D   
Sbjct: 360 IRTLRRGGNILNQIIDEAKKEHRQITGEEAFKLKDTYGFPLEEILLIALDDELE-VDTKR 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +  EE + R+R          +E ++    E + + +F+GY+                
Sbjct: 419 FIELEEEAKERSRKTRKSTQQLASENLF----EGFASCEFLGYE---------------- 458

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V AI+     V++  +GQ+  +V D+TPFYAE GGQ+GD G   G+
Sbjct: 459 -------ETEAEGKVAAIIVDNAFVDQLEAGQEGMIVLDRTPFYAEKGGQVGDKGLLTGE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++D Q   +GI  H   +ERG +R +  L+  +D + R+ ++ +H+ATHLLH AL
Sbjct: 512 NSLFHVSDCQSPYKGIIAHLGKLERGAIRLKDPLMARVDLERRQSIANHHTATHLLHWAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + PD LRFD +H K +T  E++ IED VN  I +N+ V +  ++ E
Sbjct: 572 CKVLGDHVKQAGSVVAPDRLRFDFSHHKGLTQKEIRDIEDLVNAKIRENIAVKSYELSYE 631

Query: 658 DAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +AI         G KY++ VRV+ ++Y      S  LCGGTHV   G I L  I  E SI
Sbjct: 632 EAIQREEIKQFFGDKYDNIVRVIDIDY------SKELCGGTHVKQLGSIGLFRIAKEGSI 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHA 775
            AG+RRIEA+TG  A      ++  L S+A  LK     ++ R+  + EE ++L Q +  
Sbjct: 686 AAGVRRIEAVTGSWAEQRSREEENLLLSIADSLKTQPQKLIQRINSLLEENKELAQELKT 745

Query: 776 KRKLQLN--VEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGIS 831
            +   L   V DL  +K  +V  +  I  EV   S E++ + D     ++SG+++L   S
Sbjct: 746 LKSAHLKNIVADL-INKAEEVQGIRFIAQEVALSSDEMRQLADDAVNALESGVVVLAA-S 803

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + +  ++  V++D++D+   A DL +  A ++ GGGGGG+ H AQ+GG    K  QA++
Sbjct: 804 LDGRCQLMARVSDDMIDKGIKASDLIKTLAPII-GGGGGGKAHFAQAGGKTPEKISQALS 862

Query: 891 GVASFL 896
            V + L
Sbjct: 863 TVRTLL 868


>gi|223039439|ref|ZP_03609727.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222879235|gb|EEF14328.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 849

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 356/883 (40%), Positives = 532/883 (60%), Gaps = 65/883 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L FF   GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKRDAIAYAWEFVTQALKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180
           Y+TV++ D+EAF LW++   ++ ++I R   +DNFW M +TGPCGPCSEIF+DQG     
Sbjct: 122 YVTVHERDDEAFALWEQ--HIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHFN 179

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E   GG      +G+R++EIWNLVFMQ+E+ +  +   LPK SIDTGMGLER+  +++
Sbjct: 180 TPEDYMGG------DGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIME 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +NYD  LF  LI+    + G  Y   +  ++RVI DH+RS +FL+A G     EGRG
Sbjct: 234 GKFSNYDSSLFMPLIEEVAALCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRG 293

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E ++ E+ERF
Sbjct: 294 YVLRRILRRAIRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIKLEEERF 353

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+  GL L +  L+     +I +G+ AFKLYDT G PLD+  D+L  +GL  +D   F
Sbjct: 354 LATIASGLELFESELTRT--KDIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKF 410

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ + EQ++RA+A   G G  + +  + +L EK+G  +F GY+ L               
Sbjct: 411 DELMSEQKARAKAAWKGSGDKSAKGDFKALLEKFGENEFSGYEEL--------------- 455

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               + T+ V +++    ++ +I++   +G++   +FD TPFYA++GGQ GD+G   G  
Sbjct: 456 ----ERTSKVLALLDEDFKETQILK---AGEQGWAMFDVTPFYAQSGGQAGDSGEVAGAA 508

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D QK   G+ + +  V++  L+   ++ L +  Q R +++ +HSATHLLH AL 
Sbjct: 509 ---DVLDTQKFF-GLSLSNVTVKKE-LKIGDTVKLKVSEQ-RAEIARHHSATHLLHSALR 562

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           ++LG+H++Q GS +    LRFD +H K +T+ EL  IE+ VN  I++N+   T IM+ ED
Sbjct: 563 SVLGTHIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNAAISENIEAKTEIMDIED 622

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL G KY D+VRV+S      G  S  LCGGTHVS+  +I   +I  E  + A
Sbjct: 623 AKNSGAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVSNLSQIGAFFITKEGGVSA 677

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+  + A +       +++ L + LK ++   +G V+++  E + L+    K K
Sbjct: 678 GVRRIEAVCSKAALNLAKAWRSEIEELKTELKSTE--PIGAVKKLKAEIKSLK---DKAK 732

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              N   L+C    +VN     ++ +D  ++K+ +D  + + +   I+LV +++E K ++
Sbjct: 733 QAKNAHALAC---VNVNETKLCVAVLDGGDIKATIDEFKNENEKAAILLVQVNEEGKIAL 789

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              V    L    A +  + +A++L GG GGG+   A +GG N
Sbjct: 790 AAGVKNAAL---KAGEWVKFTAQIL-GGNGGGKDDFATAGGKN 828


>gi|312793514|ref|YP_004026437.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180654|gb|ADQ40824.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 883

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 355/909 (39%), Positives = 539/909 (59%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +T
Sbjct: 4   STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L +
Sbjct: 64  TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE 
Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE 
Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGRG
Sbjct: 239 DSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ RF
Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D GL +L+  +  L K++  ILNG++AF++YDT+G PLD+ ++I   +G+  +D  
Sbjct: 359 NQTIDVGLEILESEIEKLKKNKEIILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +++Q+ RARA    L +   + I   + E    T F+GYD L      ++D K+L
Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------EQDAKIL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                I L N  ++ VK         EE V      V+ D+TPFYAE+GGQ+ D G   G
Sbjct: 471 ----KIFLDNEETAYVK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+  ++ DV+K  +G  +H   V +G +    S+V  ++ + R     NH+ATHLLH A
Sbjct: 514 EGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVNEELRLATMKNHTATHLLHSA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H  Q+GS +TPD LRFD  H +P++  ++  IE  VN++I Q +PV   + + 
Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS+
Sbjct: 634 DSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEAITG +A   ++   + LK L S +K S    ++ ++E++    + L+    
Sbjct: 689 AAGVRRIEAITGNKAYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEVE 748

Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830
           K KL +   +LS    K  D      I++  ++ ++   K + D ++++    I++ + I
Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKERDSKAIVLNI-I 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
            +  K ++L+  +++ + +   VD  ++  +V    GG GGGRP  AQ GG + +K D A
Sbjct: 808 QQGSKVTILMSCSKEAVKK--GVDCGKVVKEVCSVLGGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|329926749|ref|ZP_08281157.1| alanine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938949|gb|EGG35317.1| alanine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 875

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 359/907 (39%), Positives = 523/907 (57%), Gaps = 68/907 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +   
Sbjct: 4   SEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K    D 
Sbjct: 64  QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY EDEEA+KLW +  GL  ++II++   DNFW + E GPCGPC+EIF+D+GE 
Sbjct: 120 EKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDRGEG 176

Query: 183 IPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                P S      E ER++E+WNLVF QF          LP  +IDTG GLER A++LQ
Sbjct: 177 YDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF+ +IQ + ++ G+KY       +  +VI DH+R+ +F + DG+LP+NEG
Sbjct: 237 NVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +E+E
Sbjct: 297 RGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIATEEE 356

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F KTL  GL +L  V +   K    +++G  AFKLYDT+G P D+ +D     GL  +D
Sbjct: 357 QFHKTLSDGLNILADVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASEHGLT-VD 415

Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKF 468
              F+ A++EQR RARA      S+ +  G      +++K     ++F+GY D +  +K 
Sbjct: 416 REGFDAAMKEQRDRARAARHETESMKVQGGVLSD--YTVK-----SEFVGYNDTVSEAKV 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +                        AIV      +    G+  +V+ D TPFYAE+GGQ+
Sbjct: 469 L------------------------AIVSGDSFADSVSEGETCQVILDVTPFYAESGGQV 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G  +R ++  + K   G  VH   VE G L+   ++   +D   R  +  NH+
Sbjct: 505 SDQGMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDTAMRNDIVKNHT 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++P
Sbjct: 565 ATHLLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVP 624

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV      ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I + 
Sbjct: 625 VVIERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIF 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ ES I +G+RRIEA+TG+ A  HL GQ + LK  A  LK +  +V  R+E + ++ +
Sbjct: 680 KLLGESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVK 739

Query: 769 KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823
            L   +   + +L   + S    K+  V   S + +EV +     L+ + D L+ K+   
Sbjct: 740 DLARENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPET 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++L G     K + ++ V ++L+ + ++A  L +  A V  GGGGGGRP MAQ+GG + 
Sbjct: 800 ILVL-GSKAGDKVNFVVAVPQELVKQGYHAGKLVKEVASVC-GGGGGGRPDMAQAGGKDA 857

Query: 883 NKADQAI 889
           +K  QA+
Sbjct: 858 SKLAQAL 864


>gi|311031558|ref|ZP_07709648.1| alanyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 877

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 366/916 (39%), Positives = 545/916 (59%), Gaps = 70/916 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPANPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT E     + 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKKEAIDWAWEFLTSEKWIGFEA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +T++ EDEEA+K W ++ G+ A++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLSVTIHPEDEEAYKYWNEVIGVPAERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+EIWNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 180 YGNDLNDPELYPGG--ENERYLEIWNLVFSEFNHNPDHTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I+A+E V+G KY  N       +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDVPTNFDTDLFIPIIEATENVSGEKYRTNVEKDTAFKVIADHIRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ LG   P M  L+P +   M   YPE+ + +  I+  +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKQLGINRPFMYELVPVVAEIMVDFYPEVKEKQDFIQRVVKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V++   +D   +++G  AF+LYDT+G P+++ ++ +  +G+  
Sbjct: 358 EERFHETLNDGLAILSTVIAKAKEDGSTVVSGSDAFRLYDTYGFPVELTEEYVEEQGMT- 416

Query: 413 IDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +D   F + +E QR RAR+     +S+ + SG        L E    + F+GYD L    
Sbjct: 417 LDHEGFEKEMEMQRDRARSARQDSNSMQVQSGV-------LGEIRTESSFVGYDQLTAE- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + +  IV+ GE+ + AV+G +V+V+  +TPFYAE+GGQ
Sbjct: 469 ----------------------TTLSIIVKNGELADSAVTGDEVQVILAETPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + +  R  + DVQK   G  +H  +VE G+L  E ++   +  +NR Q+  NH
Sbjct: 507 IADHGYIVTESGRGFVKDVQKAPNGQNLHTIVVEEGVLNREQAVKAEVHAKNRAQIIKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATH+LH AL  +LG+HV+Q GS +T D LRFD +H   +T  E++ IE  VN+ I  ++
Sbjct: 567 TATHILHQALKDVLGTHVNQAGSQVTADRLRFDFSHFGQVTQEEIEKIEAIVNEKIWASI 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            VV    +  +A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L
Sbjct: 627 NVVIENKSISEAKAMGAMALFGEKYGDIVRVVQV-----GEYSLELCGGCHVPNTSEIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I AG RR+EA+TG+ A   L  Q + LK  A+ LK     V  R++ +  + 
Sbjct: 682 FKIVSESGIGAGTRRMEAVTGEGAYRLLNDQVQLLKDAAAKLKTKPQEVGTRIDVLLSDM 741

Query: 768 RKLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           ++LQ  +     +L N+E  S   K  DVN ++ ++S+V   D   L++++D L+ K+ S
Sbjct: 742 KELQRENQSLASKLGNIEASSLSSKAKDVNGVTMLVSKVAGTDMNNLRTMVDDLKNKLGS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           GII+L  + ++ K ++   VT+DL+++ ++A  + +  A    GGGGGGRP MAQ+GG N
Sbjct: 802 GIIVLASV-QDGKVNISAGVTKDLIEKGYHAGKVVKEVATRC-GGGGGGRPDMAQAGGKN 859

Query: 882 GNKADQAIAGVASFLK 897
             + D A+  V  ++K
Sbjct: 860 PEQVDSALQSVEDWIK 875


>gi|312875971|ref|ZP_07735960.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797169|gb|EFR13509.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 883

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/909 (38%), Positives = 537/909 (59%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +T
Sbjct: 4   STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L +
Sbjct: 64  TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE 
Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE 
Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGRG
Sbjct: 239 DSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ RF
Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D GL +L+  +  L K++  ILNG++AF++YDT+G PLD+ ++I   +G+  +D  
Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +++Q+ RARA    L +   + I   + E    T F+GYD L      ++D K+ 
Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------EQDAKIF 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                I L N  ++ VK         EE V      V+ D+TPFYAE+GGQ+ D G   G
Sbjct: 471 ----KIFLDNEETAYVK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+  ++ DV+K  +G  +H   V +G +    S+V  +D + R     NH+ATHLLH A
Sbjct: 514 EGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHSA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H  Q+GS +TPD LRFD  H +P++  ++  IE  VN++I Q +PV   + + 
Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS+
Sbjct: 634 DSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++    + L+    
Sbjct: 689 AAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEVE 748

Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830
           K KL +   +LS    K  D      I++  ++ ++   K + D ++++    I++ + I
Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKERDSKAIVLNI-I 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
            +  K ++L+  +++ + +   VD  ++  +V    GG GGGRP  AQ GG + +K D A
Sbjct: 808 QQGSKVTILMSCSKEAVKK--GVDCGKVVKEVCSVLGGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|289578243|ref|YP_003476870.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527956|gb|ADD02308.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 877

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 357/908 (39%), Positives = 547/908 (60%), Gaps = 53/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + +TT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFS G YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL +++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLERMAT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +L   ++ L   GK  +L G  AFKLYDT+G PLD+ ++IL   G+  +D  
Sbjct: 361 ETIDQGLTILQDYINELKLQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEVGIV-VDEE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE+QR RAR+      S   + I+ +L +    T+F+GY                
Sbjct: 419 GYTKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGY---------------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T G +S V AIV++ E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    
Sbjct: 461 -------TTYGCNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLEN 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + + +++ D +K  +  FVH   +ERG++     +   ID  +R   + NH+ATHLLH A
Sbjct: 514 ENVLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       
Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+  GA AL   KY D+VRVV ++      +S  LCGGTHV +T EI L  +VSES++
Sbjct: 633 DEALKEGAVALFTEKYGDKVRVVRIDD-----YSVELCGGTHVKNTNEIGLFKVVSESAV 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774
            AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  + +  ++  
Sbjct: 688 GAGLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQ 747

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K+   + D   +    ++ +  ++S++   DS+ LK++ D L+ K+++ +++L   +
Sbjct: 748 LKIKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASST 807

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E KA  + + T+D++ +  N   + + + KV   G GGGRP +AQ  G N +K  +A+ 
Sbjct: 808 LE-KAIFVGMATKDVVQKGINMGAVIKEACKV-SEGNGGGRPDIAQGTGKNPSKVKEALD 865

Query: 891 GVASFLKK 898
                +K+
Sbjct: 866 KAIEVVKE 873


>gi|297544523|ref|YP_003676825.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842298|gb|ADH60814.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 877

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 357/908 (39%), Positives = 547/908 (60%), Gaps = 53/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + +TT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFS G YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL +++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLERMAT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +L   ++ L   GK  +L G  AFKLYDT+G PLD+ ++IL   G+  +D  
Sbjct: 361 ETIDQGLTILQDYINELKLQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEVGIV-VDEE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE+QR RAR+      S   + I+ +L +    T+F+GY                
Sbjct: 419 GYTKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGY---------------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T G +S V AIV++ E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    
Sbjct: 461 -------TTYGSNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLEN 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + + +++ D +K  +  FVH   +ERG++     +   ID  +R   + NH+ATHLLH A
Sbjct: 514 ENVLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       
Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+  GA AL   KY D+VRVV ++      +S  LCGGTHV +T EI L  +VSES++
Sbjct: 633 DEALKEGAVALFTEKYGDKVRVVRIDD-----YSVELCGGTHVKNTNEIGLFKVVSESAV 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774
            AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  + +  ++  
Sbjct: 688 GAGLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQ 747

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
            K K+   + D   +    ++ +  ++S++   DS+ LK++ D L+ K+++ +++L   +
Sbjct: 748 LKIKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASST 807

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E KA  + + T+D++ +  N   + + + KV   G GGGRP +AQ  G N +K  +A+ 
Sbjct: 808 LE-KAIFVGMATKDVVQKGINMGAVIKEACKV-SEGNGGGRPDIAQGTGKNPSKVKEALD 865

Query: 891 GVASFLKK 898
                +K+
Sbjct: 866 KAIEVVKE 873


>gi|302871868|ref|YP_003840504.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574727|gb|ADL42518.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 881

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 346/909 (38%), Positives = 529/909 (58%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +T
Sbjct: 4   STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L +
Sbjct: 64  TCQKCIRTP----DIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+GE 
Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGED 178

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE 
Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID+ K +     +VT  +Y  N    V+ RVI DH+R   F+I DGILP+NEGRG
Sbjct: 239 DSLFDIDIVKAIRNKVCEVTNYEYGKNAEKDVSVRVITDHIRGIVFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ RF
Sbjct: 299 YVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNPYPELVQKAEYIKKVLYNEESRF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D GL +L+  +  L K++  ILNG++AFK+YDT+G PLD+ ++I   +G+  +D  
Sbjct: 359 NQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +++Q+ RARA    L +   + I   ++E    T F+GY+ L      K++ K+L
Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIEEDI-ETVFVGYETL------KQESKIL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                             I  + E V  A       V+ D+TPFYAE+GGQ+ D G   G
Sbjct: 471 -----------------KIFMEDEEVAYAKEEDVCFVILDKTPFYAESGGQVADKGILEG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+  ++ DV+K  +G  +H   V +G +    S++  +D   R     NH+ATHLLH A
Sbjct: 514 EGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVIAKVDEGLRFATMKNHTATHLLHSA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H  Q+GS ++ D LRFD  H +P++  ++  IE  VN++I Q +PV   + + 
Sbjct: 574 LRKILGQHAQQSGSQVSADRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS+
Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++    + L+    
Sbjct: 689 AAGVRRIEAITGNKVYEFILNSQQTLKQLRSKVKASTDSEILAKIEQLENRIKDLENEVE 748

Query: 776 KRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV---MDALQKKIQSGIIMLVGI 830
           K KL +   ++S      VN+     I++  ++ ++  V    D ++++    I++ + +
Sbjct: 749 KYKLLVIESEISSLIDKAVNYGEFKLIVNRKETDDMDYVKLFTDKIKERDSKAIVLNI-L 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
            +  K +VL+  +++ + +   VD  ++  ++    GG GGGRP  AQ GG +  K D A
Sbjct: 808 EQGNKVTVLMSCSKEAVKK--GVDCGKVVKEICAVLGGKGGGRPEFAQGGGNDILKIDIA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 VQTAENILK 874


>gi|312143796|ref|YP_003995242.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904447|gb|ADQ14888.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 877

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 363/913 (39%), Positives = 541/913 (59%), Gaps = 66/913 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF+   H +L S+ L+P NDP+L++ N+GM PFK  F G  +P +  + T QK
Sbjct: 8   IRQAYLDFFESKDHLVLDSAPLVPKNDPSLLWINAGMAPFKAYFDGSLEPPHPRIATSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI  AW+ +T+  + ++ RL+
Sbjct: 68  CIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEKAIIWAWEFVTEVLEFEEDRLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180
           IT+Y +D+EA  +W+K  GL  ++I+R+   +NFW +  TGPCGPCSEI +D+G      
Sbjct: 124 ITIYKDDDEAHDIWQKKVGLPEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGIEFGDS 182

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E + GG      EG+R++EIWNLVF Q+      E   LP  +IDTGMGLER+A++LQ 
Sbjct: 183 SEDVLGG------EGDRFLEIWNLVFTQYNYTEAGEYKELPNKNIDTGMGLERVASILQN 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL K +I      TG+ Y+ ++     +RVI DH+RS +  I+DG LP+NEGR
Sbjct: 237 TKTNFETDLIKPIIDEVVAKTGIAYQKDDESQTAYRVIADHIRSVAVAISDGALPSNEGR 296

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA  Y R +G+TEP +  L+      +    P+L Q    +E  ++SE+E 
Sbjct: 297 GYVIRRLIRRAARYGRKIGFTEPFLYELVKTTAEVVKGVAPDLKQQLAHVENVIKSEEES 356

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTL++GL +L+  L  L  +  E+L+G  AF LYDT+G PLD+ +DI    G+  +D 
Sbjct: 357 FLKTLEQGLNILEDFLVDLKAENKEVLSGKNAFILYDTYGFPLDLTKDIASEAGIM-VDE 415

Query: 416 ISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
             F   +  QR RAR         SG  +K++ S K +  A +F GY  L          
Sbjct: 416 EGFEAEMAAQRKRAREAREETSFSSGEIDKLYASFKAEVEAVEFTGYHSLTE-------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V  IV++ + ++    G++  +V  +TPFYAE+GGQLGD G 
Sbjct: 468 ---------------ESEVVGIVRENQKLQSIKKGEEANLVLHKTPFYAESGGQLGDKGI 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHL 592
              +    ++ +   +A+ + VH   VE+G L+   S V  + Y +RR+ +  +HSATHL
Sbjct: 513 IKNENFEAKVLNTFARAK-LPVHKVKVEKGELKRGDS-VKAVVYDDRRKATARHHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  L  +LG HV+Q+GS + P+ LRFD TH   ++  EL  IE  +N  + +N PV T 
Sbjct: 571 LHKTLKEVLGEHVNQSGSLVAPEKLRFDFTHFSALSDQELNEIEKRINKAVMENYPVETE 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               E+A A GA AL G KY++ VRVV +     G +S  LCGGTHV +TG+I    I+S
Sbjct: 631 EKALEEAKAMGAEALFGEKYDEEVRVVKM-----GDYSLELCGGTHVDATGDIGPFKIIS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES I AG+RRIEA+ G+ A  +   + + L   A+ LK     V  R++++ +E ++LQ 
Sbjct: 686 ESGIAAGVRRIEAVVGEFALDYFNEKVDILNQAAAELKTEPDQVADRIKDLQKEKKELQK 745

Query: 772 -LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            L   K+KL  + +D    K   +A +N ++  +SE+D++ L++++D L+ K+ S +I+L
Sbjct: 746 ELQSLKQKLAGSKKDELLDKLKNVAGINVLTAELSELDNQGLRNLIDQLKDKLDSAVIVL 805

Query: 828 VGISKEKKASVLIV-VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
              SK +   V +  VT DL+++ F+A  +    A+V  GGGGGGRP MAQ+GG   +K 
Sbjct: 806 A--SKGQNKVVFVASVTADLIEQGFHAGKIISEVAQV-AGGGGGGRPDMAQAGGSKVDKT 862

Query: 886 DQAIAGVASFLKK 898
             A+A V   +KK
Sbjct: 863 AAALAKVEEIIKK 875


>gi|255655294|ref|ZP_05400703.1| alanyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296451278|ref|ZP_06893018.1| alanine--tRNA ligase [Clostridium difficile NAP08]
 gi|296880370|ref|ZP_06904333.1| alanine--tRNA ligase [Clostridium difficile NAP07]
 gi|296259884|gb|EFH06739.1| alanine--tRNA ligase [Clostridium difficile NAP08]
 gi|296428611|gb|EFH14495.1| alanine--tRNA ligase [Clostridium difficile NAP07]
          Length = 879

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 344/909 (37%), Positives = 549/909 (60%), Gaps = 54/909 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR+ FLEFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P    + T
Sbjct: 6   LNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRMCT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG T RH TFFEM+GNFSFG YFK  +I+  W+ +T+  ++ + 
Sbjct: 66  SQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           ++++TVY+ED++++ +W K      ++++++  +DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 KIWVTVYEEDDDSYDIWAKEMNFPEERMVKLGKDDNFWEIG-TGPCGPCSEIYFDRGEEY 180

Query: 182 -CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            C  P   PG   + +RY+E WN VF QF++  +    +L   +IDTGMGLERM  ++Q 
Sbjct: 181 GCDNPDCKPGC--DCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K +++A E++TG+KY  N  N ++ R+I DH+R+ +FL++DG+LP+NEGR
Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG  E  +  L+  +      AYP L++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358

Query: 358 FGKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F +T+D+G  +L+    VL + GK  +L+G  AFKLYDT+G P+D+ ++IL    L+ +D
Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGK-TVLSGQEAFKLYDTYGFPIDLTKEILEEEHLS-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +FN+ +E+Q+ RAR     +   + ++   S  E    + F GY  + G         
Sbjct: 417 EEAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYGE-------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            ++AIV+  E+V+ A  G KV +V D T FY E GGQ+GD G  
Sbjct: 469 ---------------GTIEAIVKDDELVQSAKEGDKVSIVLDNTTFYPEGGGQVGDCGLI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             + + L++ + +K A     H  I++ G +     +   +D + R   + NHSATHLLH
Sbjct: 514 TNENLVLEVLNTKKGANNSIKHIGIIKSGSISNGDKVKTLVDRETRMSAARNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I  +L +   IM
Sbjct: 574 KALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N ++A   GA AL G KY D VRVVS+     G +S+ LCGGTH+++T ++ +  I+SE 
Sbjct: 634 NIKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEG 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEAITG+    +L  +D  +  +   LK  + N++ R+  + EE + L  +L
Sbjct: 689 GVAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKEL 748

Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+ L   D    S  ++  VN +++    +D   L+   D L+ K+ SG+++L  
Sbjct: 749 HDMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLAN 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +  + K + ++  T+D+LD+  ++ ++ R  AK+  GG GGGRP+MAQ+G  + +K DQA
Sbjct: 809 VV-DDKVNFVVTATKDVLDKGIHSGNIVREVAKI-AGGKGGGRPNMAQAGASDVSKVDQA 866

Query: 889 IAGVASFLK 897
           ++  +  +K
Sbjct: 867 LSYASEVIK 875


>gi|160902096|ref|YP_001567677.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|205830174|sp|A9BJE0|SYA_PETMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160359740|gb|ABX31354.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 876

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 342/910 (37%), Positives = 539/910 (59%), Gaps = 62/910 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH+ LPSSSLIP NDP L+FT +GMVPFK IF G+ +P Y  +TT QK
Sbjct: 9   IRENFLYFFEKKGHKKLPSSSLIP-NDPQLLFTVAGMVPFKPIFWGKVEPTYTRITTCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E  L   +L+
Sbjct: 68  CLRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKKEAIKWAWEFLTEELGLPAEKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180
            +VY+ D+EAF +WK    +  +KI+R    +N+W  A +TGPCGPCSEI+FD G     
Sbjct: 124 ASVYETDDEAFNIWKDDIKIPENKILRFGKEENWWGPAGQTGPCGPCSEIYFDTGYTENC 183

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                C P    G      R++EIWN+VF ++          LP+ +IDTG G ER+  V
Sbjct: 184 PDQENCTPACDCG------RFVEIWNIVFTEYYSDENGNLSPLPRKNIDTGAGFERICAV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294
            Q K +N+D DLFK +I+  +++ G+K+  N    V+ +VI DH R+ +FLI++GI+P+N
Sbjct: 238 TQGKYDNFDSDLFKEIIEEIQRIFGVKFRVNKSKDVSIKVIADHSRAIAFLISEGIIPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ +  LL    P +  +L  +  +MG  YPELI+ + LI++    E
Sbjct: 298 EGRGYVLRRLIRRAVRHGALLEAKGPFLSSILETVIKKMGKIYPELIEKEALIKDISFME 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +T+++G+  L+ ++ +L  +  L G +AF+LYDT+G PLD+ ++IL  +G+  +D
Sbjct: 358 EEKFFETMEKGMERLNNIIQNLNNETTLPGKIAFELYDTYGFPLDLTKEILSEKGIE-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + + +QR  AR+ S  +   T ++I+  + +    T+FIGYD L  ++       
Sbjct: 417 EKEFTELMNKQREMARSASGKVEYDTEKQIYKEIDKFLTPTEFIGYDKLSSTE------- 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V+ I++   IV +A  G ++E+ F +TPFYAE GGQ+ D G  
Sbjct: 470 ----------------EVQLIIKGNSIVPQAQEGDEIELFFPKTPFYAERGGQVSDKGVI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++  V+     I  H   +++G ++    + L +D + R+    NH+ATHLLH
Sbjct: 514 YNETFEAEVIHVKPIRNEIISHLVKIKKGSIKNGERVFLKVDEKKRKATEKNHTATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G H+ Q GS + P+ LRFD TH +P+T  ++K IE  +N+ I + +PV   + 
Sbjct: 574 SALRKVIGEHIRQAGSYVAPERLRFDFTHYEPLTQDQIKQIEYLINEQIQKAIPVNIYLK 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A +    AL   KY + VR+V ++       S  LCGGTHVS+TGEI L  I+ ES
Sbjct: 634 SLEEAKSMDVIALFEEKYGEVVRIVEID-----DFSRELCGGTHVSNTGEIGLFKILEES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI +G+RRIEAITG  + ++    +  + +L+  L  S+  +  ++E I +  +  +   
Sbjct: 689 SISSGVRRIEAITGFESLNYATELESIMTNLSKMLDSSRDQIPDKIEGILKTIKNQE--K 746

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSH----IISEVDSKELK---SVMDALQKKIQSGIIML 827
             ++LQ  +   +  ++A+   +      +++++++ E     +  D L +K+  G+++L
Sbjct: 747 EIKQLQFQLATKNIERLAETPQIIEGEKVVVAQLENLEKDVHANTADILLQKLGRGVVIL 806

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S  ++ S+++ V++D   +F+A ++AR  A  L GGGGGG P  AQ+GG   NK  +
Sbjct: 807 FNKSNNEQVSLVVKVSKDTSKKFHAGNIARKIASYL-GGGGGGGPTFAQAGGKYANKVKE 865

Query: 888 AIAGVASFLK 897
            I  +  F++
Sbjct: 866 VIEHINDFME 875


>gi|126698879|ref|YP_001087776.1| alanyl-tRNA synthetase [Clostridium difficile 630]
 gi|254974827|ref|ZP_05271299.1| alanyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255092215|ref|ZP_05321693.1| alanyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255100300|ref|ZP_05329277.1| alanyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255306239|ref|ZP_05350411.1| alanyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|255313954|ref|ZP_05355537.1| alanyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255516634|ref|ZP_05384310.1| alanyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255649733|ref|ZP_05396635.1| alanyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260682889|ref|YP_003214174.1| alanyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260686487|ref|YP_003217620.1| alanyl-tRNA synthetase [Clostridium difficile R20291]
 gi|306519842|ref|ZP_07406189.1| alanyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|122974138|sp|Q18BE7|SYA_CLOD6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115250316|emb|CAJ68138.1| Alanyl-tRNA synthetase [Clostridium difficile]
 gi|260209052|emb|CBA62175.1| putative alanyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260212503|emb|CBE03433.1| putative alanyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 879

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 345/909 (37%), Positives = 549/909 (60%), Gaps = 54/909 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR+ FLEFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P    + T
Sbjct: 6   LNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRMCT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG T RH TFFEM+GNFSFG YFK  +I+  W+ +T+  ++ + 
Sbjct: 66  SQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           ++++TVY+ED++++ +W K      ++++R+  +DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 KIWVTVYEEDDDSYDIWAKEMNFPEERMVRLGKDDNFWEIG-TGPCGPCSEIYFDRGEEY 180

Query: 182 -CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            C  P   PG   + +RY+E WN VF QF++  +    +L   +IDTGMGLERM  ++Q 
Sbjct: 181 GCDNPDCKPGC--DCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K +++A E++TG+KY  N  N ++ R+I DH+R+ +FL++DG+LP+NEGR
Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG  E  +  L+  +      AYP L++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358

Query: 358 FGKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F +T+D+G  +L+    VL + GK  +L+G  AFKLYDT+G P+D+ ++IL    L+ +D
Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGK-TVLSGQEAFKLYDTYGFPIDLTKEILEEEHLS-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +FN+ +E+Q+ RAR     +   + ++   S  E    + F GY  + G         
Sbjct: 417 EEAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYGE-------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            ++AIV+  E+V+ A  G KV +V D T FY E GGQ+GD G  
Sbjct: 469 ---------------GTIEAIVKDDELVQSAEEGDKVSIVLDNTTFYPEGGGQVGDCGLI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             + + L++ + +K A     H  I++ G +     +   +D + R   + NHSATHLLH
Sbjct: 514 TNENLVLEVLNTKKGANNSIKHIGIIKSGRISNGDKVKTLVDRETRMSAARNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I  +L +   IM
Sbjct: 574 KALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N ++A   GA AL G KY D VRVVS+     G +S+ LCGGTH+++T ++ +  I+SE 
Sbjct: 634 NIKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEG 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEAITG+    +L  +D  +  +   LK  + N++ R+  + EE + L  +L
Sbjct: 689 GVAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKEL 748

Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+ L   D    S  ++  VN +++    +D   L+   D L+ K+ SG+++L  
Sbjct: 749 HDMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLAN 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +  + K + ++  T+D+LD+  ++ ++ R  AK+  GG GGGRP+MAQ+G  + +K DQA
Sbjct: 809 VV-DDKVNFVVTATKDVLDKGIHSGNIVREVAKI-AGGKGGGRPNMAQAGASDVSKVDQA 866

Query: 889 IAGVASFLK 897
           ++  +  +K
Sbjct: 867 LSYASEVIK 875


>gi|260891458|ref|ZP_05902721.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260858841|gb|EEX73341.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 871

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 343/909 (37%), Positives = 530/909 (58%), Gaps = 62/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +TT 
Sbjct: 4   NEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRITTY 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   L++ R
Sbjct: 63  QKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLEEDR 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD---QGE 181
           L+++VY  D+EA+++W K  G+ A++I+R+   DN+W+    G CGPCSEI++D    G+
Sbjct: 119 LWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQNMGK 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                     ++G+R++EIWNLVF ++ +        LP+ +IDTG GLER+ +V+Q K 
Sbjct: 179 NNEEAYRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERITSVVQNKD 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NN+D DLF ++I+  + V  ++ +GN N    ++I DH+R+S FLI DG+LP+NEGRGY+
Sbjct: 239 NNFDTDLFTNIIKGIKSV--LEIQGNENEEAIKIIADHVRASVFLIGDGVLPSNEGRGYI 296

Query: 301 LRRIMRRAM-----CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           LR+I+RRA         ++    +  +  L+P +   M  AYPEL + +  IE+ +R E+
Sbjct: 297 LRKIIRRAFGAGSSAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF  TL  G  +L+  +  L  +  + L  ++ FKLYDT G P ++ + IL  +G    
Sbjct: 357 ERFATTLKNGTEMLEEEIQKLKAENQKELPAELTFKLYDTFGFPFELTKLILENQGFEAS 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +   F + L EQ  R++     +     ++      EK+G T+F GY     S+  +E  
Sbjct: 417 E-EEFEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGY-----SQNFEEKS 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
            +L              I K+         E +SG   E++FD+TPFYAE+GGQ+ DTG 
Sbjct: 471 TLL-------------HIAKS---------EGISG--YEMIFDKTPFYAESGGQVADTGI 506

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHL 592
                   ++ +V KK + +F+H   + RGI     + + + ID   R+ +  NH+ATH+
Sbjct: 507 ITSGEFEGRVVNVVKKHD-VFIHQVEITRGIAPAVGVEVKMQIDVNRRKDIQRNHTATHI 565

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  L   LG+HV Q+GS +  + LRFD +H + ++   ++ IE  VNDII  NL V   
Sbjct: 566 LHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAVSPEMIEKIEKGVNDIILSNLQVKIN 625

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             N EDA A GA AL   KY D VRVV +   DG  +S  LCGGTHV STGEI L  I S
Sbjct: 626 YENIEDAKARGAMALFSDKYGDVVRVVEI---DG--YSIELCGGTHVKSTGEIGLFNIES 680

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G RRI A TG ++ +++   +EK+K ++   +  + NVV  +E+   + R    
Sbjct: 681 ESGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAVK 740

Query: 773 IHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +H +      K ++N    +   + DV  +       +  ELK ++D  ++K+QSGII+L
Sbjct: 741 VHEEMQTKLVKYEINEMLENLETVNDVKVLKSSFENKNVDELKEIVDRGKEKMQSGIIIL 800

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G +   KA  ++ VT+DL+ +  A ++ +++A+V  GG GGGRP  AQ+GG +G+   +
Sbjct: 801 -GTNNNGKAIFVVGVTKDLISKVKAGEIVKVAAQV-AGGNGGGRPDFAQAGGKDGSAVKE 858

Query: 888 AIAGVASFL 896
           A+     F+
Sbjct: 859 AVEKAFEFI 867


>gi|218961963|ref|YP_001741738.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167730620|emb|CAO81532.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 866

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 364/911 (39%), Positives = 527/911 (57%), Gaps = 66/911 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  F++FF   GH  +PSS +IP +DPTL+F N+GM  FK+IF GQ++  Y+ 
Sbjct: 1   MISSKEIRQQFIDFFLNRGHIFVPSSPVIPEDDPTLLFANAGMNQFKSIFLGQKEITYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDL+ VG+   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + +
Sbjct: 61  VVNSQKCIRAGGKHNDLEEVGKDGYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D EAF++WK+ + +    I      DNFW M ETGPCGPCSEI  D+G
Sbjct: 121 PKDKLYATVYKTDTEAFEIWKQETDIDPTHISYFDDKDNFWEMGETGPCGPCSEIHIDRG 180

Query: 181 --ECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
              C     PG +   +    R+IE+WNLVF+Q+ ++  +    L    +DTG G ER+A
Sbjct: 181 SSHCTRQNEPGHICKINGGCSRFIELWNLVFIQYNREADKTLSPLKNKFVDTGAGFERLA 240

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ+K +NY+ DLF  LI   E+++G+ Y     + HRVI DH+R   F +ADG  P+N
Sbjct: 241 QVLQDKNSNYETDLFMPLINKIEELSGVAYTQETGMPHRVIADHIRCLCFALADGGFPSN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  Y RLLG+ EP +  L+P +  +M   + EL   +  I+  +++E
Sbjct: 301 EGRGYVLRRILRRAARYGRLLGFAEPFLHLLVPLVIEQMAHHFSELNGKEDYIKMVIKAE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF KTLD GL     +   L K E+++G  AF LYDT+G P D+   +   +GL  ID
Sbjct: 361 EERFNKTLDTGLEKFREITQKL-KGEVISGSDAFILYDTYGFPPDLTAILAEEKGLK-ID 418

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + ++ QR RAR A    L     + I FS       T+F+GY             
Sbjct: 419 YEGFEKEMQLQRKRARKASKFTLFVNNEDWIEFS---PVTPTEFVGYK------------ 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V+  +Q+  I E+ +    + +   QTPFYAE+GGQ+ DTG 
Sbjct: 464 ---------------ENTVQTYIQRYAIQEKGL----ILMQLAQTPFYAESGGQVSDTGK 504

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +   L+IT+V+K+ E I +H+  ++RG +     +   ID + R+ ++ NH+ATHLL
Sbjct: 505 IYNEEFELEITNVRKQDEYI-IHYGKLKRGTVNN-APVTAEIDRERRKSIARNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG H  Q GS +  D LRFD  H + +T  E++ +ED VN  +  N  V T +
Sbjct: 563 HKALREVLGEHTVQKGSLVHSDYLRFDFAHFRALTLEEIRKVEDIVNQAVLDNRKVKTTV 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA AL G KY+++VRVV VE       S  LCGGTH+SSTGEI L  I+SE
Sbjct: 623 KNIEEAKKEGAIALFGEKYSEKVRVVCVEN-----FSQELCGGTHISSTGEIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RK 769
           SS  AGIRRIEAITG  A   +    +KL  +++ L     N+  ++E   E+     R+
Sbjct: 678 SSSAAGIRRIEAITGISALKWVQDLQDKLSRISTLLNSPVKNIESKLEATLEQISALERE 737

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLV 828
           L+   AK + +   E LS     +   +    +E D+ +ELK+  + L+ K+Q  I +L 
Sbjct: 738 LKSAKAKEEEKFVQELLSKATKQENYLLIKAQTEFDNLEELKTTAEQLKTKMQGTIAVLF 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            + ++ K ++L VV+ DL+ ++NA  + A+L+ ++   G GGGR  +A +GG +      
Sbjct: 798 NLYQD-KLNILCVVSADLIPKYNAGKIVAKLANEL--KGKGGGRTDIAMAGGKD------ 848

Query: 888 AIAGVASFLKK 898
            IA +AS ++K
Sbjct: 849 -IANLASVMEK 858


>gi|220929512|ref|YP_002506421.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999840|gb|ACL76441.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 879

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 346/907 (38%), Positives = 549/907 (60%), Gaps = 50/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS+ L+P NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERYLKFFESKGHLRLPSAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  AI  AW+ +TK+ ++   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTKDLEMPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF +W K+ GL A++I+R+   DNFW     GPCGPCSEI+FD+G   
Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-IGPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+E WN VF QF +  +     L   +IDTGMGLER+A + Q+  
Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNKDEQGNYTRLAHPNIDTGMGLERLACISQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D   ++++   +  G++Y+ +    V+ RV+ DH+RS++ ++ DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVWNILEFICKTAGVEYKKSEKTDVSIRVVTDHIRSTTMMVCDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +P +  +   +  E   AYPEL +    I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKADYIKKVIKIEEERFE 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+G+++L+  +  +   K  ++ G++ FKL+DT+G PLD+ ++I    GL GID   
Sbjct: 361 ATVDQGIIILNEFIDEIKAEKQNVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEEG 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++ QR +AR AH+    S  ++ ++  L +K   T F+GY+               
Sbjct: 420 FKREMDAQRKKARDAHNSKDTSAWSDSVYDKL-DKSQKTAFVGYE--------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S++  IV+ GEIV+ A  G ++ V+ D+TPFYAE GGQ+GDTG    
Sbjct: 464 --------NTASDSVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDTGILTA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +++I +  K A+G F+H   VE GI+ T  ++  +ID + R  ++ NH+ THLLH A
Sbjct: 516 QNGKVKIENCTKTADGKFLHTGFVETGIVETGSTITASIDEKRRIAINRNHTVTHLLHKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L T+LG HV Q GS + P+ LRFD +H   +T  ELK +ED  N++I  ++ V  + M+ 
Sbjct: 576 LRTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDITNEVILSSMNVNIKEMSI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY + VRVV VE      +S  LCGGTH+++T +  L+ I+ ES +
Sbjct: 636 DEAKKLGALALFGEKYGNTVRVVKVED-----YSIELCGGTHLNNTAQAGLVKILGESGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHA 775
            AG+RR+EA+TG+ A  +   ++  L  +A  LK +  + + +VE + +E +  +  I  
Sbjct: 691 AAGVRRLEALTGEAAIRYYTDRENLLNEVAQALKAAPQDSLKKVESLGQELKNAEKEIEQ 750

Query: 776 KRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            R   ++ E  S      +I  V  ++     +D + L++  D L+ K+ SG+++L G  
Sbjct: 751 LRNKLVSGEAESVLANAVEIKGVKVVTARFDTMDMEGLRNTGDMLKNKLGSGVVVL-GSG 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             +K S ++  T+D++ +  ++ ++ +  AK   GGGGGGRP MAQ+GG + +K D+A+ 
Sbjct: 810 YGEKVSFIVTATKDVVAKGIHSGNIIKEVAKT-AGGGGGGRPDMAQAGGKDLSKIDEALK 868

Query: 891 GVASFLK 897
             AS ++
Sbjct: 869 TAASIVE 875


>gi|52081222|ref|YP_080013.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786603|ref|YP_092432.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319644810|ref|ZP_07999043.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|59798507|sp|Q65GS5|SYA_BACLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52004433|gb|AAU24375.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349105|gb|AAU41739.1| AlaS [Bacillus licheniformis ATCC 14580]
 gi|317392619|gb|EFV73413.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 878

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 351/910 (38%), Positives = 532/910 (58%), Gaps = 58/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SLIP  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRQMFLDFFKEKGHAVEPSASLIPHEDPSLLWINSGVATLKKYFDGRVVPENPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTDQKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TV+ ED+EA++LW K  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ERLSVTVHPEDDEAYELWSKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGED 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E ERY+E+WNLVF +F          LPK +IDTGMGLERM +V+
Sbjct: 180 Y-GNDPSDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   NYD DLF  +I+A+E ++G KY          +V+ DH+R+++F + DG LP+NE
Sbjct: 239 QDAKTNYDTDLFMPIIKATEAISGEKYGTSAEKDTAFKVVADHIRTAAFAVGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYV+RR++RRA+ YA+ +    P M  L+P +   M + Y E+ +    I + +++E+
Sbjct: 299 GRGYVIRRLLRRAVRYAKSININRPFMYELVPVVADIMAAFYGEVKEKADFIAKVIKTEE 358

Query: 356 ERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL  GL +L  V+       + I++G+  FKLYDT+G P+++ ++     G+  +
Sbjct: 359 ERFHETLHEGLAILSEVIQKEKAKGNRIISGEDVFKLYDTYGFPVELTEEYAEDEGME-V 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + +++QR RAR     +GS   +    +L++    ++FIGY  ++         
Sbjct: 418 DHEGFEREMDKQRERARQARQDVGSMQVQG--GALRDIMTESEFIGYSDIK--------- 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + +  ++Q GE+V+    GQKV+ + ++TPFYAE+GGQ+GD G 
Sbjct: 467 --------------TETKIAELLQDGELVDLVQEGQKVQFILEKTPFYAESGGQIGDKGW 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  +++TDV+K   G  +H  IVE G ++  MS+   +  + R+ +  NH+ATHLL
Sbjct: 513 VKSGDAAIRVTDVKKAPNGQHLHEGIVESGAIKKGMSVTAEVTERLRKDIVKNHTATHLL 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV+Q GS +T   LRFD +H   +T  EL+ IE  VN+ I  ++PV   +
Sbjct: 573 HQALKDVLGTHVNQAGSLVTDSRLRFDFSHFGQVTKEELEQIETKVNEKIWASIPVQIDL 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
               +A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IVSE
Sbjct: 633 KPIAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVRNTAEIGLFKIVSE 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG RRIEA+TGQ A   +  + E L+  A  LK +   V  R+E +  + +  Q  
Sbjct: 688 SGIGAGTRRIEAVTGQGAYEEMNAKLELLEQAAEVLKTNVKEVPKRIEALQSDLKDAQRE 747

Query: 774 HAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
           +     +L  ++      K+ +++ +  +  +V++K+   L++++D L+ K+ S +I+L 
Sbjct: 748 NESLLAKLGNKEAGEILEKVKEIDGIKLLAEKVNAKDMNHLRTMVDDLKAKLGSAVIVLG 807

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            +  E K ++   VT+DL++R F+A  L +  A+   GGGGGGRP MAQ+GG    +  +
Sbjct: 808 AVQNE-KVNISAGVTKDLIERGFHAGKLVKQVAEAC-GGGGGGRPDMAQAGGKQPERLAE 865

Query: 888 AIAGVASFLK 897
           A+A    ++K
Sbjct: 866 ALASAEEWVK 875


>gi|161502129|ref|YP_001569241.1| hypothetical protein SARI_00146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863476|gb|ABX20099.1| hypothetical protein SARI_00146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 784

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 348/805 (43%), Positives = 492/805 (61%), Gaps = 56/805 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+ +W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYGIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRTLIEAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERDIK-VDEAGFETAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVNGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H   + 
Sbjct: 388 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVGFTFAVNDTQKYGQAIG-HLGKLS 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+    +   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LRFD 
Sbjct: 447 AGALKVGDVVQADVDEARRARIRLNHSATHLMHAALRQVLGAHVAQKGSLVSDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +  +E++ +ED VN  I +NLP+ T IM  E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPSEIREVEDLVNAQIRRNLPIETHIMELEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH   TG+I L  I+SES   AG+RRIEA+TG+ A + +  Q ++
Sbjct: 567 -----GDFSTELCGGTHARRTGDIGLFRIISESGTAAGVRRIEAVTGEGAMATVHAQSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  D+N +  
Sbjct: 622 LNDIAHLLKGDSQNLGDKVRAVLERSRQLEKELQQLKDQAAAQESASLSSKAVDLNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S +I+L  +  E K S++  V++D+  R  A +L 
Sbjct: 682 LVSELAGVEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTGRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
            + A+ + GG GGGRP MAQ+GG +
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764


>gi|86606529|ref|YP_475292.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123738092|sp|Q2JTG8|SYA_SYNJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86555071|gb|ABD00029.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 883

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 357/906 (39%), Positives = 527/906 (58%), Gaps = 68/906 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR  FL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF G + P Y  VTT 
Sbjct: 8   AAIRQAFLDFYAQRGHQVLPSASLVP-EDPTVLLTIAGMLPFKPIFLGHQDPQYPRVTTA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F L   R
Sbjct: 67  QKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWELVTEVFGLPPER 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-----Q 179
           L ++V+ EDEEAF LW+   G+   +I R+   DNFW+   TGPCGPCSEI++D      
Sbjct: 123 LVVSVFREDEEAFALWRDAIGIPPHRIRRMGEEDNFWAAGPTGPCGPCSEIYYDFKPELG 182

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E I  G      +  R++EI+NLVFM+  + ++     L + +IDTG+GLER+A VLQ 
Sbjct: 183 DEQIDLG------DDSRFLEIYNLVFMELNRDSEGRLTPLARQNIDTGLGLERLAQVLQG 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
             NNY+ DL   ++Q + ++  + Y        V+ +VI DH R+   LIADG++P+N  
Sbjct: 237 VPNNYETDLIFPIVQKAAEIARVDYFQASPEQKVSLKVIGDHARAVMHLIADGVIPSNVD 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RR + + RLLG  EP  + ++        +AYPE+ + + +I+  L+ E+E
Sbjct: 297 RGYVLRRLIRRMVRHGRLLGIGEPFTLPVVETAIQLAEAAYPEVREREAVIKAELQREEE 356

Query: 357 RFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +F KTL+RG  LL  + +++   G  + ++G  AFKL+DT+G PL++ Q+I   RG + +
Sbjct: 357 QFLKTLERGERLLFDLFANVTASGAPKQISGADAFKLFDTYGFPLELTQEIAQERGFS-V 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F Q +E+QR RARA    L   T +     L E    T+F+GY             
Sbjct: 416 DVQGFEQEMEKQRQRARAAHQTLDV-TAQGSLDELAEFLIETEFLGYS------------ 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +    +V+A++ +G+ V +  +GQ V+VV D+TPFYAE+GGQ+GD G 
Sbjct: 463 -----------QSSARGVVEALLVEGKSVPQVEAGQSVQVVLDRTPFYAESGGQIGDRGY 511

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             GDG+ +++ DVQK+ + +FVH   VERGILR    +   ID   RR+   +H+ATHLL
Sbjct: 512 LAGDGVLVRVEDVQKRGD-LFVHFGWVERGILRVGDPVQAQIDLACRRRAQAHHTATHLL 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  ++   +SQ GS +  D LRFD T S+P+T  EL+ +ED VN  IA+  P    I
Sbjct: 571 QAALKKVVDPSISQAGSLVAFDRLRFDFTLSRPLTPEELQQVEDLVNTWIAEAHPAQVSI 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M   +A A GA A+ G KY   VRVV       GV S  LCGGTHVS+T EI L  I+SE
Sbjct: 631 MPLAEAKARGAIAMFGEKYGAEVRVVDFP----GV-SMELCGGTHVSNTAEIGLFKIISE 685

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           S + AGIRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q  
Sbjct: 686 SGVAAGIRRIEAVAGPAVLEYLNERDSVVRELSAQFKAKPQEIPERVAALQAELKAAQRA 745

Query: 772 LIHAKRKLQ-LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L  A+ +L  L  E L    +A  ++  ++  +     + LK+  + L  K+  G ++L 
Sbjct: 746 LEEARSQLALLQAERLLPQAVAVGNLQILAAELGSTPPEALKTAAEHLLHKLGEGAVVLG 805

Query: 829 GISKEKKASVLIVVTEDL----LDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            + +  K S++   +  +    L   + + ++A+L+         GGRP++AQ+GG    
Sbjct: 806 SVPEAGKVSLVAAFSPAVQKLGLKAGSFIGEIAKLTGGGG-----GGRPNLAQAGGKQPE 860

Query: 884 KADQAI 889
           K  QA+
Sbjct: 861 KLAQAL 866


>gi|162453400|ref|YP_001615767.1| hypothetical protein sce5124 [Sorangium cellulosum 'So ce 56']
 gi|205830212|sp|A9FRF5|SYA_SORC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161163982|emb|CAN95287.1| alaS [Sorangium cellulosum 'So ce 56']
          Length = 917

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 353/939 (37%), Positives = 519/939 (55%), Gaps = 84/939 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFLEFF + GHE++PS+ L+P NDPTLMF N+GMV FK++FTG+++  YQ   + QK
Sbjct: 12  LRRTFLEFFAQRGHEIVPSAPLVPQNDPTLMFVNAGMVQFKDVFTGKDRRPYQRAASSQK 71

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+NVG T RH TFFEMLGNFSFG YFKE AI  AW+LLTK +D+   RL 
Sbjct: 72  CIRISGKHNDLENVGVTARHQTFFEMLGNFSFGDYFKEDAIAFAWELLTKVYDISPSRLV 131

Query: 127 ITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +T+Y+       D+EA  +W+K++G   D+I+R+   DNFW+M + GPCGPCSEI F  G
Sbjct: 132 VTIYNGEGGFPADDEAAAIWRKVTGFGDDRILRLGLADNFWTMGDVGPCGPCSEIHFFHG 191

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVL 237
           +       G     +G  + EIWN VFMQ+E+  K    + LP  SIDTGMGLER+A+VL
Sbjct: 192 KEPDVARFGEEPRIDGTGWTEIWNNVFMQYERAEKDGPLVPLPAPSIDTGMGLERLASVL 251

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           Q  T+NYD DL + L+  + +++G  Y G   ++ V+ RVI DH R+++FLIA+G++P  
Sbjct: 252 QGVTSNYDTDLLRGLVDKAAELSGKPYSGGSADDDVSMRVIADHARTAAFLIAEGVMPEK 311

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           + R YVLRR+MRRA+ +   LG   P +  +   +   MG  YPEL   + LI      E
Sbjct: 312 QRREYVLRRVMRRAIRHGHRLGIDRPFLHEVALEVVRRMGETYPELRDRRELIARVTEDE 371

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + RF  TL RG+ +LD     +    +  L    A  LY T+G PLD+ Q ++ A     
Sbjct: 372 EVRFRSTLKRGMKILDERFDEMRSSGERTLPAAAAADLYTTYGFPLDLTQ-VISAESNFD 430

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+         Q + A     G   G  +            T  +           +E 
Sbjct: 431 VDV---------QGAEAIIKGAGEADGPIDP-----------TAAV-------DPAHREA 463

Query: 473 RKVLCQKPPIDLT-----NGVSSIVKAIVQ---QGE---------IVEEAVSGQKVEVVF 515
           R  L Q  P+  T      G S IV AIV+   QGE         +VE A +G  VE+V 
Sbjct: 464 RAKLAQ--PVVFTGYEHEEGDSEIV-AIVRVEIQGEGDRARKVRALVERAEAGAAVEIVV 520

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +TPFYAE+GGQ+GD G    DG R+++ D QK   G+ VH  +V  G L     + L +
Sbjct: 521 RETPFYAESGGQVGDVGEVTADGARVEVKDTQKPLAGLVVHEGVVHEGALAVGQRVHLAV 580

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D+  R     NHSATH+LH AL  +LG H  Q GS + PD LRFD TH++P+T  E+  I
Sbjct: 581 DHAARSATRRNHSATHVLHWALRKVLGEHAQQKGSRVGPDVLRFDFTHNRPLTREEISRI 640

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED VN+ +  N  V T I+  ++A   GA A+   KY D VR++++  E        LCG
Sbjct: 641 EDLVNEKVLTNAKVTTEILAMDEARRRGAMAIFEEKYGDTVRMLTMTPE-----VVELCG 695

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTH  + G+I L  I SE  + AG+RRI A TG  A ++  G + +L       K   G+
Sbjct: 696 GTHACALGDIGLFKITSEGGVAAGVRRILASTGLNALAYARGVEAELARARQVAKAQGGD 755

Query: 756 VVGRVEEIWEEYRKLQ--LIHAKRKL-------------QLNVEDLSCHKIADVNFMSHI 800
           +  ++ +I    R+L+  +   +R++              ++        I  +  ++  
Sbjct: 756 LAEKIGKIVAHERELEKKVAELERRILEGAGPAQGGGGGGIDAMLDGARDIGGIKVLARR 815

Query: 801 ISE-VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           + +  +   L+ + + L+ K+     +L+G +   KA + +++++   +R  A +L +  
Sbjct: 816 VPDGTNPGALRDLAEKLRDKLGDRSAVLLGAAVGDKAQLAVMLSKSATERLKAGELIKPI 875

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           A+++ GG GGGRP MAQ+GG +  + D AIA + + +++
Sbjct: 876 ARIV-GGSGGGRPDMAQAGGTDVAQLDAAIAALYTEVER 913


>gi|219847052|ref|YP_002461485.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219541311|gb|ACL23049.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 894

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 367/920 (39%), Positives = 523/920 (56%), Gaps = 57/920 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TF+ FF+++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFISFFKRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYTRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI+LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIRLAWKLLTEEFQLPV 124

Query: 123 RRLYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+   DE   D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++   Q    LP+ S+DTGMGLERMA 
Sbjct: 184 IYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRATMQP---LPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + YD DLF  +I     V G   E        +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYDTDLFVSIINRIIAVRGSDEEHYQAHRSAYRAIADHSRAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++  +  +MG  YPEL+  + LI      
Sbjct: 301 NLGRPYVLRRILRRAAYQGRTIGFERPFLAEVITTVIDQMGEVYPELVNRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L+ V+  +    + ++ G  AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLSRLNAVIEQVRTRGETVIPGTDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA + G   G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAAGKRGGEAD-LWAEL--DLPASHFTGYERL-------S 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           DR                + V  ++  G+ +  A+ G++V++V D TPFYAE+GGQ+GDT
Sbjct: 470 DR----------------ATVIGMLADGDAITSAMVGRQVQIVLDTTPFYAESGGQVGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GVLVGPEGSVQIEDTRRPLPGLIVHYGRVVSGTIHVGDQVQATVDMVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+KP+   EL+ IE  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKPLDPEELREIERRLNAWVRADASVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG---GVHSS----ALCGGTHVSSTGE 704
            I     AIA GA AL G KY D VRVV++E   G   G ++S     LCGGTHV+ TGE
Sbjct: 634 EITGYRSAIARGAIALFGEKYGDTVRVVTIERGTGIENGEYASRDSLELCGGTHVNRTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ E SI +GIRR+EA+TG+ A      Q + L+ LA+ +      ++ R+E + 
Sbjct: 694 IGFVRILGEGSIGSGIRRVEALTGRGAELWAEEQAQTLRDLAARINAQPAQLIERIEALL 753

Query: 765 EE--YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819
            E   R+ +L   + KL   + D   H+   V  +  + +EV++   + L+ + + L+ K
Sbjct: 754 AENRQRRQELEALRSKLAREMLDTLVHRTQTVAGIPLLAAEVEADSVERLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + S +I+L G     K  +L +VT DL+ R  NAV + +  A ++ GGGGGGRP +AQ+G
Sbjct: 814 LGSAVIVL-GAQINGKPQLLTIVTSDLVKRGLNAVHIVKPLAAIV-GGGGGGRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G   ++   AI      L +
Sbjct: 872 GRTPDRLAAAITAAVDVLAE 891


>gi|237736819|ref|ZP_04567300.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420681|gb|EEO35728.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 866

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 356/908 (39%), Positives = 536/908 (59%), Gaps = 64/908 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF+K  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  VTT 
Sbjct: 5   NQIRKEFIEFFKKKNHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   LD+ +
Sbjct: 64  QKSIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIVWSWEFVTEVLGLDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G    
Sbjct: 120 LWVSVFTTDDEAEKIWIEKCNFPKERIVRLGEDENWWAAGPTGSCGPCSEIHVDLGPAY- 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+  ++Q K
Sbjct: 179 GGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERVTAMVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +NN++ DL   L++ + ++T  KY  +     + +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 SNNFETDLLFPLVEEAGRLTNTKYGEDKEKDFSLKVITDHSRAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG +E  +  ++  +   M  AYP+L      I++ ++ E+E+F
Sbjct: 299 YVLRRILRRAVRHGRLLGQSELFLYKMVDKVVEMMNEAYPDLNDNLEHIKKVVKIEEEKF 358

Query: 359 GKTLDRGLVL----LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            +TLD+G+ L    ++ V S  GK   L+GD+ F+LYDT+G P ++ ++I   +G+  + 
Sbjct: 359 SRTLDQGIQLVNQEIEKVKSEGGKK--LSGDITFRLYDTYGFPYELTEEICEEKGVE-VS 415

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +EEQ+ +ARA    +     +       +KYGAT F+GY+ L      KE  K
Sbjct: 416 REEFEAKMEEQKEKARAAREVVMEKGQDSFIEEFYDKYGATNFVGYETL------KETAK 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           +L                         + E   G+ + ++FD TPFY E+GGQ  D G  
Sbjct: 470 LLS------------------------IREGKDGKTL-MIFDTTPFYGESGGQTADIGVI 504

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G   ++ DVQK+ +GIF H   + +G  +     +L +D  NR   + NH+ATHLLH
Sbjct: 505 SGNGFEGKVVDVQKQ-KGIFTHTVEIVKGEAKEGEEYLLEVDEMNRLATAKNHTATHLLH 563

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +    LRFD  H + +TS E++ +E+ VN+ IA++L V  R M
Sbjct: 564 KALREVLGTHVQQAGSLVNGQRLRFDFNHYEAMTSEEIEKVENLVNEKIAESLCVTVRNM 623

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A   GA AL G KY D VRVV V+       S  LCGGTH+ +  +I L  I SES
Sbjct: 624 SMDEAKKEGAMALFGDKYGDVVRVVKVD-----DFSIELCGGTHIDNIAKIGLFKIESES 678

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KL 770
            I AG+RRIEA+TG  A   +   +  LK +A  +K  + NVV RVE++ E  R    ++
Sbjct: 679 GIAAGVRRIEAVTGLGAYELVKKMERTLKEIAKTVKSDEANVVERVEKMTETLRENSKEI 738

Query: 771 QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           + + AK    +    + +  +I  V  +     +  ++EL+ ++D+L+ K+ S +++L  
Sbjct: 739 ETLKAKITNYEAGSLNAAAEEINGVKVVIKTFKDKTAEELRQMVDSLKDKLGSCVVVLA- 797

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S E KA   + VT+DL+ +  A +L + +A++  GG GGGRP  AQ+GG + +K ++A+
Sbjct: 798 -SGEDKAVFAVGVTKDLIGKVKAGNLVKEAAQI-AGGNGGGRPDFAQAGGKDASKIEEAV 855

Query: 890 AGVASFLK 897
           A V   LK
Sbjct: 856 AKVRETLK 863


>gi|154174082|ref|YP_001408546.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|205830012|sp|A7GZA4|SYA_CAMC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112803074|gb|EAU00418.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 852

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 372/906 (41%), Positives = 535/906 (59%), Gaps = 67/906 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQ 59
           M N+  +R  +L FF+  GHE+ PS+ L+P ND TL+FTN+GMVPFK+IFTG+  +P   
Sbjct: 1   MQNLD-VREAYLNFFKSKGHEITPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 59  IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLK 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY+TV++ D+EAF+LW +   ++ D+I R   +DNFW M +TGPCGPCSEIF+DQ
Sbjct: 119 LPVDRLYVTVHESDDEAFELWAR--HIARDRIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E   GG      +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER
Sbjct: 177 GGEHFNTPEDYMGG------DGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLER 230

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  +++ K +NYD  LF  LI    ++ G  Y  ++  ++RVI DH+RS +FL+A G   
Sbjct: 231 VTAIMEGKFSNYDSSLFMPLIDEVAKLCGKPYSYDSGASYRVISDHIRSVTFLLAQGTTF 290

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
             EGRGYVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E +R
Sbjct: 291 DKEGRGYVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCEMMGGHYTYLNEKKAAVKEQVR 350

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF  T+  GL L +  L+     EI +G+ AFKLYDT+G PLD+  D+L  +GL  
Sbjct: 351 LEEERFLATIASGLELFNEELAK--TKEIFSGETAFKLYDTYGFPLDLTADMLREKGLK- 407

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++ + EQ++RA+A   G G  +++  +  L E++G  +F GYD L        +
Sbjct: 408 VDEAKFDELMSEQKARAKAAWKGSGDKSSKGDFKQLLEEFGENKFSGYDEL--------E 459

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           R+              S I+  +    + V+   +G+   V+FD TPFYA++GGQ GDTG
Sbjct: 460 RQ--------------SKILALLDNDFKRVQNLRAGESGWVMFDVTPFYAQSGGQTGDTG 505

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G   ++ D Q K  G+ +    V + I +T   L L +    R +++ +HSATHL
Sbjct: 506 EITGVG---KVLDTQ-KFHGLNLSQVEVGKQI-KTGDVLNLKVS-DARAEIARHHSATHL 559

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG+HV+Q GS +  D LRFD +H K +TS EL+ IE  VND +A +    T 
Sbjct: 560 LHAALRKILGTHVAQAGSNVEADRLRFDFSHPKALTSEELEMIEKFVNDAVASSAAAKTE 619

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A  SGA AL G KY + VRV+S+     G  S  LCGGTHV +  EI   +I  
Sbjct: 620 IMDIEAAKNSGAIALFGEKYAENVRVLSL-----GNVSKELCGGTHVKNVSEIGAFFITK 674

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+  + A +   G   +L  +++ LK ++  V   ++++  E R+L  
Sbjct: 675 ESGVSAGVRRIEAVCSRAALNLARGFRSELAEISNELKTNEPMVA--IKKLKGEVREL-- 730

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
              K KL+ N+ D        +N     ++ V S ++K+++D  + +  S  I+L+ ++ 
Sbjct: 731 ---KDKLK-NIGDSHAIAFTSINDTKMGVAVVKSGDIKTMIDNYKNEFASLAILLLQVND 786

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K A    V    +     A +  +++AK+L  G GGGR   A +GG N    + A+   
Sbjct: 787 DKIAIAAGVKNAPI----KAGEWVKMAAKIL-DGNGGGRDDFATAGGKNVPMIETAVKEA 841

Query: 893 ASFLKK 898
             F K+
Sbjct: 842 FEFAKE 847


>gi|264678535|ref|YP_003278442.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209048|gb|ACY33146.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 834

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 341/811 (42%), Positives = 478/811 (58%), Gaps = 54/811 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTNSGMV FK++F G +K  Y   T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+
Sbjct: 1   MFTNSGMVQFKDVFLGTDKRPYNRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNW 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFK+ +I+  W+LLTK F L   +L  TVY ED+EA+ +WK + GL A++IIRI  
Sbjct: 61  SFGDYFKKESIEWGWELLTKVFGLPAEKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGD 120

Query: 157 N-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQF 208
           N       DNFW MA+TGPCGPCSEIF+D GE I GG PGS  E+G+R+IEIWN VFMQF
Sbjct: 121 NKGGKYKSDNFWMMADTGPCGPCSEIFYDHGEHIAGGPPGSPDEDGDRFIEIWNHVFMQF 180

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268
           + +       LP   +DTGMGLER+A +LQ   +NY+IDLF+ LI+A+ + T    E  +
Sbjct: 181 DMKEDGSVVKLPAPCVDTGMGLERLAAILQHVHSNYEIDLFQALIKAAGRETST--EDLS 238

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
             + +VI DH+R++SFL++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  
Sbjct: 239 TPSLKVIADHIRATSFLVSDGVIPSNEGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVAD 298

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           L  +MG AYP+L + +  I   L++E+ERF +TL  G+ +LD  L+  G  ++L GDVAF
Sbjct: 299 LVVQMGDAYPKLKEQEAHITSVLKAEEERFFETLANGMEILDSALA--GDVKVLPGDVAF 356

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           KL+DT+G PLD+  D+   RG+  +D   FN A++ Q+  ARA           K+  +L
Sbjct: 357 KLHDTYGFPLDLSNDVARERGVT-VDEAGFNAAMQHQKETARA-------AGKFKMDRAL 408

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +    A  F GYD L       E  K++                 A+   G  V E  +G
Sbjct: 409 EYTGDANVFTGYDKL------AEAAKIV-----------------ALYADGVSVNELKAG 445

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q   VV D TPFYAE+GGQ+GD G     G R  + D  K    +F HH ++E G L+  
Sbjct: 446 QSGVVVLDTTPFYAESGGQVGDQGVIAAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVG 505

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   +D   R     NHS TH++H AL  +LG HV Q GS +  +  RFD  H+ P+T
Sbjct: 506 DAVEAQVDTAVRAATMRNHSVTHIMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPVT 565

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++ IE  VN  +  N     R+M+ E A  +GA  L G KY + VRV+ +       
Sbjct: 566 AEQIREIEARVNAEVLANTATDARVMDIESAQKTGAMMLFGEKYGETVRVLDIG------ 619

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHVS TG+I L  +V ES + AG+RRIE ITG+ A ++L   +  +   A+ 
Sbjct: 620 SSRELCGGTHVSRTGDIGLFKVVGESGVAAGVRRIEGITGENALAYLQSLESTVDQAAAA 679

Query: 749 LKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISE 803
            K     +  R+    ++ + L  ++   K KL  +  D    + ADVN    ++  +  
Sbjct: 680 FKAPAAELTNRIGGALDQIKALEKEIAALKGKLASSQGDELATQAADVNGVKVLAAKLEG 739

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            D+K L+  MD L+ K+ + +I+L  +  +K
Sbjct: 740 ADAKTLRDTMDKLKDKLGAAVIVLAAVDGDK 770


>gi|322382967|ref|ZP_08056799.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153087|gb|EFX45545.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 882

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 355/916 (38%), Positives = 535/916 (58%), Gaps = 66/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR+ +L FF   GH++ PS+SL+P ND +L++ N+GM P K  F G+  P    +  
Sbjct: 11  ASEIRSKWLNFFASKGHKVEPSASLVPHNDASLLWINAGMAPLKPYFDGRIIPENPRIVN 70

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE+AI  AW+ LT  K    +
Sbjct: 71  AQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEQAITWAWEFLTDPKWIGFE 126

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+ +TVY ED+EAF LW    GL  ++I ++  +DNFW + E GPCGPC+EIF+D+GE
Sbjct: 127 PERISVTVYKEDQEAFDLWHNKIGLPEERIYKLG-DDNFWGIGE-GPCGPCTEIFYDRGE 184

Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                    C PGG      E ER++E+WNLVF QF          LP  +IDTG GLER
Sbjct: 185 AYGDLSDPECWPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPSKNIDTGAGLER 238

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            A +LQ   +N+D DLF+ +IQ +  +  + Y+      +  +VI DH+R+ +F + DG+
Sbjct: 239 FAAILQNVDSNFDTDLFQPMIQKTCGLAKVSYKEKEETDIALKVIADHIRTVAFSVGDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+ Y ++LG  +P M  L+PALC  MG  Y E+++ +  IE+ 
Sbjct: 299 LPSNEGRGYVIRRLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKI 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL  GL +L  +++   K  +  + G  AFKLYDT+G P+D+ +D    +
Sbjct: 359 IRTEEERFHETLSDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQ 418

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  +++EQR RARA      S   +     L +    ++F+GY+       
Sbjct: 419 GMT-VDKEGFEASMQEQRERARAARQDTDSMNVQG--GPLADFTDKSEFVGYN------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         DL   V + + A++    +V+    G+  +VV D+TPFYAE+GGQ+
Sbjct: 469 --------------DLV--VPAKIIALMHNNTMVDIVNEGEICQVVLDRTPFYAESGGQV 512

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G        L++ +V K   G  VH  +VE+G  R       ++D   R  +  NH+
Sbjct: 513 SDKGTIRYGETLLRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHT 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL+ +LG HV+Q GS +    LRFD +H   IT  EL+ +E  VN+ I QN+P
Sbjct: 573 ATHLLHKALNEVLGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIP 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V+ ++M  ++A A GA AL G KY   VRVV V     G +S  LCGG HV++T EI   
Sbjct: 633 VIIKLMPIDEAKAMGAMALFGEKYGKVVRVVRV-----GDYSLELCGGCHVANTAEIGQF 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I +G+RRIEA+ G+ A +++  Q   LK  A  LK    +V  RV+ I  + +
Sbjct: 688 KIVSESGIGSGVRRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMK 747

Query: 769 KL-QLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L + I + R    ++E  S      ++  +  ++  ++  D   L+ + D ++ +I SG
Sbjct: 748 ELNREIESLRSKLSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSG 807

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L G +  +K +++  VT+DL  +  +A  + + +A +  GGGGGGRP MAQ+GG + 
Sbjct: 808 VIVL-GAASGQKVNLVAAVTQDLTKKGLHAGQIVKAAASIC-GGGGGGRPDMAQAGGKDP 865

Query: 883 NKADQAIAGVASFLKK 898
           +K  +A+  V +++++
Sbjct: 866 SKLKEALLYVETYIQQ 881


>gi|320161086|ref|YP_004174310.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994939|dbj|BAJ63710.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 911

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 361/924 (39%), Positives = 531/924 (57%), Gaps = 57/924 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TF++FF + GH  +PSSSL+P  D TL+FTN+GMV FK++F G +   Y      QK
Sbjct: 9   IRQTFIDFFVQRGHTFVPSSSLVPGGDQTLLFTNAGMVQFKDVFLGTDHRPYSRAVNSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDLD+VGR + HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + LD  RLY
Sbjct: 69  CMRVAGKHNDLDDVGRDDTHHTFFEMLGNWSFGDYYKKEAIAWAWELLTQVYQLDPARLY 128

Query: 127 ITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            T + +       DEEA ++W+     + + ++     DNFW MA+TGPCGPCSEI  D+
Sbjct: 129 ATCFKDEKGDIPTDEEAAEVWRSQPNFNPEHVLFFGRKDNFWEMADTGPCGPCSEIHIDR 188

Query: 180 GE--CIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           G   C   G+PG     + + +R++EIWNLVF+Q+ + +  E   LP+  +DTGMG ER+
Sbjct: 189 GPEACDKKGVPGHVCRVNGDCKRFLEIWNLVFIQYNRLSPTELEPLPQRHVDTGMGFERL 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
            ++LQ  ++NY  DL   L+Q ++++TG        NI  +RVI DH R+++FLIADG++
Sbjct: 249 VSLLQGVSSNYRTDLLWPLLQKTQELTGHTDAEREANITPYRVIADHARAATFLIADGVV 308

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N GR YV R I+RRA  +   +G  EP +  +   +    G  YPEL++ +  I + +
Sbjct: 309 PGNTGRNYVCRMIIRRAARFGGKIGLKEPFLAKVAEVVIQNYGDFYPELVRNRTAILDGI 368

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E+ERF +TL+ G+  L   L  L GK E IL+G  AF LY THGLPL++ +DI   +G
Sbjct: 369 TREEERFQRTLESGMKELQESLDGLKGKGEKILDGKKAFDLYATHGLPLELTRDIAQEQG 428

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS--K 467
           L  +D   F  A+EE       H L  G+G          + +G       DL R +   
Sbjct: 429 L-DVDQQGFRDAMEE-------HRLASGAG----------KAFGPLGGEDVDLYRPALES 470

Query: 468 FMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              E +  K   +  P +    V   + A+ ++G+ V    +G +VEV+  +T FY EAG
Sbjct: 471 LQAEGKLGKAGVEYNPYEWLE-VEGELLALFREGQRVSSVSAGDQVEVLLPRTGFYVEAG 529

Query: 526 GQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           GQ+ D G  +        +++T+++K A G+ VH   V RG       ++  +D Q RR 
Sbjct: 530 GQVSDAGTIVSVNEPRWEIRVTEMRKPAAGVIVHVGEVVRGTPTVGDWVIARVDTQRRRD 589

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATHLLH  L  +LG H  Q GS + PD LRFD TH +P+T  +L+ IE  VN  
Sbjct: 590 IMRNHTATHLLHAELQEVLGEHARQAGSLVAPDRLRFDFTHPEPLTPEQLERIEAGVNRA 649

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I +N+P+ TR+   ++AIA GA AL G KY + VR V +   D    S  LCGGTHV  T
Sbjct: 650 ILENIPLQTRVKPLQEAIAEGAMALFGEKYGEVVRTVMIGETD--PLSYELCGGTHVHET 707

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I L  IVSE S  AG+RRIEA+TG+ A   +  +   ++  A  L  S   V  RVE 
Sbjct: 708 GDIGLFLIVSEGSAAAGVRRIEAVTGRGAYELVQKRFRNMRKTAEMLSASMDEVPERVEN 767

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDA 815
           + +E   L+   A   L+  V  L+  +       I DV  ++ +I  VD+  L+S+ D 
Sbjct: 768 LLDEMSILR--KAVASLRQQVASLAFDQDLEKVTFIEDVAVLTSLIQGVDADTLRSLADR 825

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
            +++  +G+++L  +  + K  ++  VT+DL+ R F+A DL +     + GGGGGGRP +
Sbjct: 826 FRQRYSTGVVVLASVV-DGKPVIIGAVTDDLVKRNFHAGDLVK-RVAAVVGGGGGGRPTL 883

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ+GG + ++  +A+     ++K+
Sbjct: 884 AQAGGRDVSRLSEALDQTYGYVKE 907


>gi|257126597|ref|YP_003164711.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257050536|gb|ACV39720.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 871

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 346/914 (37%), Positives = 536/914 (58%), Gaps = 72/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +TT 
Sbjct: 4   NEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRITTY 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   L++ R
Sbjct: 63  QKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLEEDR 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD---QGE 181
           L+++VY  D+EA+++W K  G+ A++I+R+   DN+W+    G CGPCSEI++D    G+
Sbjct: 119 LWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQNMGK 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                     ++G+R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q K 
Sbjct: 179 NNEEADRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQNKD 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NN+D DLF ++ +  + V  ++ +GN N    ++I DH+R+S FLI DG+LP+NEGRGY+
Sbjct: 239 NNFDTDLFTNITKGIKSV--LEIQGNENEEAIKIIADHVRASVFLIGDGVLPSNEGRGYI 296

Query: 301 LRRIMRRAM-----CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           LR+I+RRA         ++    +  +  L+P +   M  AYPEL + +  IE+ +R E+
Sbjct: 297 LRKIIRRAFGAGSAAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF  TL  G  +L+  +  L G+++  L  ++ FKLYDT G P ++ + IL  +G    
Sbjct: 357 ERFATTLKNGTEMLEEEIQKLKGENQKELPAELTFKLYDTFGFPFELTKLILENQGFEAS 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +   F + L EQ  R++     +     ++      EK+G T+F GY      +  +E  
Sbjct: 417 E-EEFEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGY-----LQNYEEKS 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K+L              I K+         E +SG   E++FD+TPFYAE+GGQ+ DTG 
Sbjct: 471 KLL-------------HIAKS---------EGISG--YEMIFDKTPFYAESGGQVADTGI 506

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHL 592
                   ++ +V KK + +F+H   + RGI     + + + ID   R+ +  NH+ATH+
Sbjct: 507 ITSGEFEGKVVNVVKKHD-VFIHQVEIIRGIAPAVGVEVKMQIDVNRRKDIQRNHTATHI 565

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH  L   LG+HV Q+GS +  + LRFD +H + I+   ++ IE  VNDII  NL V   
Sbjct: 566 LHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAISPEMIEKIEKGVNDIILSNLQVKIN 625

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             N EDA A GA AL   KY D VRVV +   DG  +S  LCGGTHV STGEI L  I S
Sbjct: 626 YENIEDAKARGAMALFSDKYGDIVRVVEI---DG--YSIELCGGTHVKSTGEIGLFNIES 680

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G RRI A TG ++ +++   +EK+K ++   +  + NVV  +E+   + R    
Sbjct: 681 ENGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAVK 740

Query: 773 IHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +H + + +L          NVE ++  K+   +F+   +      ELK ++D  ++K+QS
Sbjct: 741 VHEEMQTKLVKYEINEMLENVETVNGVKVLKRSFVDKNVD-----ELKEIVDRGKEKMQS 795

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GI++L G +   KA  ++ VT+DL+ +  A ++ +++A+V  GG GGGRP  AQ+GG NG
Sbjct: 796 GIVIL-GTNNNGKAVFVVGVTKDLISKVKAGEIVKVAAQV-AGGNGGGRPDFAQAGGKNG 853

Query: 883 NKADQAIAGVASFL 896
           +   +A+     F+
Sbjct: 854 SAVKEAVEKAFEFV 867


>gi|308233742|ref|ZP_07664479.1| alanyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|328943732|ref|ZP_08241197.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327491701|gb|EGF23475.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 882

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 347/905 (38%), Positives = 513/905 (56%), Gaps = 58/905 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF+  G +   SSSLIP  DP+L+  N+GM  FK  + G +       T
Sbjct: 10  TTAEIREDFLSFFESKGCKRYESSSLIP-EDPSLLLANAGMNQFKEYYQGTKTMREIGAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
           + QKC+R     ND++N+G   RH +FFEMLGNFSFGGY K +AI  AW+ +T      L
Sbjct: 69  SCQKCLRT----NDIENIGDA-RHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPAHLGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY+TV+ +D+EA +LW++  G++ D I R+   DNFW+   TGPCGPCSEI+FDQG
Sbjct: 124 PKDRLYVTVFTDDDEACELWQQ-QGVALDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQG 182

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G  PG  ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLERMA ++Q +
Sbjct: 183 PSFEGEKPG--DDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERMAAIMQHE 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            +NY+ D+ + LI   E+++   Y  +  V+   R++ DH R+ +F+I DGILP NEGRG
Sbjct: 241 GSNYEGDVLRSLIGVGEELSHKTYHSSERVDTSLRILADHARAVTFMIGDGILPGNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RL+G     +      +   M   YP+L+Q K LIE  + +E++RF
Sbjct: 301 YVLRRLLRRAIYHGRLMGIEGSFLTKYSAEVMRLMAQVYPQLLQNKALIEGIISAEEQRF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD G   L   L+HL    +L G+VAFKL+DT+G P+D+ ++I    G   +D+ +F
Sbjct: 361 TATLDAGEQALKDELAHLDAGSVLPGEVAFKLHDTYGFPIDLTREIALGLG-HDVDMDTF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD--LLRGSKFMKEDRKVL 476
            + +E+QRSRARA +     GT+  +W  L + +  T F+GYD   L G+          
Sbjct: 420 EKLMEDQRSRARAQATRDAWGTSNSVWAKLSDSHEMTTFVGYDHNTLDGAH--------- 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V A+V  G  V++  +  +VEVV D TPFY E GGQ+GDTG    
Sbjct: 471 ---------------VVALVVDGASVDKVQANTRVEVVLDATPFYGERGGQVGDTGYLSN 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + ++L++ +   +   +  H  ++E+G L    +L   ID   R  +  NH+ATHLL  A
Sbjct: 516 ESVKLRVENTLHREGELLSHECVLEQGTLAVGDTLNCAIDVHRRECIRRNHTATHLLDAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HVSQ GS + PD LRFD TH + +T A++  +E  VND I    P+VTRIM+R
Sbjct: 576 LIKVLGDHVSQAGSLVAPDRLRFDFTHFEALTPAQIAQVEQLVNDEIFAAEPMVTRIMSR 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  SGA  L    Y D VRVVS    D   +S  LCGGTH  +T +I    I+SE+S+
Sbjct: 636 EEAKNSGAIQLFEDMYGDDVRVVSTGTSD-HPYSRELCGGTHARNTADIGCFKIISETSV 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            + +RR+EA+T      ++  ++++L  +A  LK    +VV RVE + +E   L+     
Sbjct: 695 GSNVRRLEALTSLGYIDYMKTREDELSQIACLLKCRPQDVVSRVEALKDEKNALE----- 749

Query: 777 RKLQLNVEDLSCHKIA----------DVNFMSHIISEVDSKELKSVMDALQKKI-QSGII 825
           +K++  +   S  K++          D   +   +  V  K+L+SV D + +++ +    
Sbjct: 750 KKVKEALTGSSSQKVSSALENALDLGDYKVVLAHLEGVSGKDLRSVWDGIHQRLGEKSAC 809

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L+  + +K   +       +   FNA  L +  A  +  G GGGRP MAQ+GG      
Sbjct: 810 VLLSATADKVQLLAAATQAAVDAGFNAGALIKNIAPCV-DGRGGGRPVMAQAGGNRVEGI 868

Query: 886 DQAIA 890
           + A+A
Sbjct: 869 NDALA 873


>gi|291545954|emb|CBL19062.1| alanyl-tRNA synthetase [Ruminococcus sp. SR1/5]
          Length = 880

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 367/912 (40%), Positives = 529/912 (58%), Gaps = 58/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG EKP    VTT
Sbjct: 6   VNELRKMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPRTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIHWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +DEEAF +W K  G+ +++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYLDDEEAFNIWNKEVGIPSERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +YE N  + V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTICALRNLVCEIAHKEYEKNYADDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +     + YPEL + K  I   L +E+ +F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGTFLAKLSAQVIESSKAGYPELEEKKEFIFRVLTNEENQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K  ++ L+GD AFKLYDT+G PLD+ ++IL  +G  GID   
Sbjct: 361 KTIDQGLRILSDMEEDMKKAGEKTLSGDNAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419

Query: 418 FNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F +A+EEQR +AR      + +G  +   + I  ++      T+F+GYD L         
Sbjct: 420 FQKAMEEQRVKARTAREVTNYMGADATVYDDIDVNV-----TTEFVGYDHLT-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +  + EIV+    GQK  V  +QTPFYA  GGQ GDTG
Sbjct: 467 ---------------FDSKVTVLTTETEIVDSLTEGQKGTVFVEQTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  + D  K   G F H   +E G++ +  ++ L ++ + R+    NHSATHL
Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISSGETVSLKVNEEARKDTEKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H + +T+ EL++ E+ VN  I   L V T 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTAEELQATEELVNKEIQAGLDVHTD 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV +T  IML  IVS
Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG+    +   Q+E L   A  LK +   VV ++  +  E + LQ 
Sbjct: 687 ESGIAAGVRRIEALTGKAVIEYYRKQEELLHEAAKALKANTAEVVEKISHLQAEVKALQS 746

Query: 773 IHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +     L     K+ +VN    ++  +  VD   L+ + D L++++  G+++L
Sbjct: 747 ENESLKSKAAQSALGDVMDKVVEVNGVKLLAAKVEGVDMNGLRDLGDKLKEQLGEGVVLL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ + K ++L + T+       +A +L +  A ++ GGGGGGRP+MAQ+GG N  KA 
Sbjct: 807 AAVN-DGKVNLLAMATDAAQKAGAHAGNLIKAVATIV-GGGGGGRPNMAQAGGKNPEKAQ 864

Query: 887 QAIAGVASFLKK 898
           +A+   A  L+K
Sbjct: 865 EAMDAAAGILEK 876


>gi|225873568|ref|YP_002755027.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793929|gb|ACO34019.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 982

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 376/1014 (37%), Positives = 550/1014 (54%), Gaps = 163/1014 (16%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR TFL FF+  GH  + SSSL+P NDPTL+FTN+GM  FK++F G E   Y   TT 
Sbjct: 7   SDIRETFLRFFETKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGLEHRDYARATTS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T      + +
Sbjct: 67  QKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKADAIAYAWELVTSLDWLGIPK 126

Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +LY+T++        DEEA++LW+   G+ A++I      DNFW M +TGPCGPCSEIF
Sbjct: 127 EKLYVTIFKGENGVPRDEEAYELWRG-QGVPAERIFEFGAKDNFWQMGDTGPCGPCSEIF 185

Query: 177 FDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +D G      PG      ++  RY+EIWNLVFMQF++    E  +LPK SIDTG GLER+
Sbjct: 186 YDMGMDAAETPGVDKPFGQDDARYVEIWNLVFMQFDRSANGELALLPKPSIDTGAGLERL 245

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------------------- 264
           A+VLQ K +N++ DLF  LIQ + ++TG++                              
Sbjct: 246 ASVLQGKVSNFETDLFTPLIQKAAELTGVRVSQSASQQVSEPAKGSQGEGDVSGNDLSRA 305

Query: 265 ------------EGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
                       EG  +  +   R+I DH R+++FLI+DG+LPANEGRGYVLR+I+RR +
Sbjct: 306 AHGAKQEGVLAPEGKELTGNASLRIIADHARAATFLISDGVLPANEGRGYVLRKILRRGI 365

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            + RLLG  +P M  ++ A+  EM  AYPEL ++   + + + +E+ +F + L+ G   L
Sbjct: 366 RHGRLLGQEQPFMGQMVYAVRDEMQVAYPELKESAERVAKVVEAEERQFARVLEVGSAQL 425

Query: 370 DGVL----SHLGKD-----------------------------------------EILNG 384
           D ++    +  G D                                          +L+G
Sbjct: 426 DQLIRSEAAGNGSDSGDRWGSGAGTGDGAGFGDGSGFGGGSGSGAGFGDGSGSERRVLHG 485

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
             AF LY+T+GLPLD M D     G+   D+  F +A  E+++RARA   G    +   +
Sbjct: 486 REAFHLYETYGLPLDFMMDAARDAGI-DFDLTGFEEARAEEQARARASWKGGAKQSASPV 544

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
           +  L +    T F GY  LR      E  +VL                 AIV+ G+ V+ 
Sbjct: 545 YRELPK----TIFEGYGKLR-----VEGAEVL-----------------AIVKDGQGVKA 578

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVE 561
           A  G  VEVV + T FYA++GGQ+GD G    D    +  +++   K  +G+F H A++ 
Sbjct: 579 ANPGDAVEVVLNATSFYADSGGQMGDHGWLYSDDHNSVVAEVSGCTKPVQGVFAHKAVLR 638

Query: 562 RGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           + + L  ++  V+  D+  R     NH+ THLLH AL  +LG+HV Q GS + P  LRFD
Sbjct: 639 QTLALGDKVDTVVDADF--RAATRRNHTGTHLLHAALREVLGTHVKQAGSLVEPGRLRFD 696

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---IASG---AAALLGTKYND 674
            +H   I   ELK IED +N  +  N    TR+   ED    +A     A AL G KY +
Sbjct: 697 FSHFTQIADEELKDIEDLINRQVLVN----TRVETIEDVPIDVAVNEYHAMALFGEKYGE 752

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--- 731
           RVRVV +     G  S+ LCGGTH  +TGEI ++ ++SE S+ +G+RR+EA+TG  A   
Sbjct: 753 RVRVVKI-----GDFSTELCGGTHTGATGEIGVVKLMSEGSVSSGVRRVEAVTGLGALDE 807

Query: 732 --RSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
             R + + Q      LA   ++S    +  R+    EE +KL  +L   + K   +    
Sbjct: 808 FRRGYQVAQ--LAAQLAPSAEMSPAEALQHRLAAQDEELKKLKRELDQVRMKSAASAVSG 865

Query: 787 SCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           + ++ A+VN    ++  + ++D  ++++++D L+ ++ SG+++L    +E K ++++ VT
Sbjct: 866 AANQAAEVNGVKVLAQRVDQLDRGQMRTLVDNLRNQLGSGVVVLGSAQEEGKVALIVGVT 925

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +DL  +  A  +    AK + GG GGGRP MA++GG + ++ D A+AGV   +K
Sbjct: 926 KDLTGKVQAGKVVAQVAKQV-GGSGGGRPDMAEAGGKDASQLDAALAGVPEVVK 978


>gi|313637763|gb|EFS03118.1| alanyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 879

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 363/923 (39%), Positives = 532/923 (57%), Gaps = 72/923 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W++  GL+ + I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDENDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L +  K  ++++ G   FKLYDT G P+++ +
Sbjct: 348 AFIQKVIRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---STFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  I+Q   +V+E  +G   +++F +TPFY
Sbjct: 464 T----------------------TEHVSEIL-YIIQNDALVDEVAAGXXAQLIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H  +V+ G+L T  ++ L++D   RR
Sbjct: 501 AESGGQVADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETVKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQIAVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK S      ++E
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTSTKETPQKIE 735

Query: 762 EIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +  + R+++  +     +L      D+  S  +I  VN ++  ++  D  +L+  +D  
Sbjct: 736 LLQADLREVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNW 795

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           + K   GI++L  +  E K +++  V+ED +   ++A  L +  A    GG GGGRP MA
Sbjct: 796 KDKKIGGILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 853

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N  +   A+  V++++K+
Sbjct: 854 QAGGKNPAELGSALDYVSTWVKE 876


>gi|312127607|ref|YP_003992481.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777626|gb|ADQ07112.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 881

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 352/909 (38%), Positives = 534/909 (58%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +T
Sbjct: 4   STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L +
Sbjct: 64  TCQKCIRTP----DIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE 
Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE 
Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHKLKNPNIDTGMGLERIAAIMQEV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGRG
Sbjct: 239 DSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ RF
Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D GL +L+  +  L K++  ILNG++ FK+YDT+G PLD+ ++I   +G+  +D  
Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETILNGEIVFKMYDTYGFPLDLTKEIAAEKGII-VDQE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +++Q+ RARA    L +   + I   + E    T F+GYD L      K++ K+L
Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------KQEAKIL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                I L N  ++  K         E+ V      V+ D+TPFYAE+GGQ+ D G   G
Sbjct: 471 ----KIFLDNEETAYAK---------EDDVCF----VILDKTPFYAESGGQVADKGILEG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH A
Sbjct: 514 EGVLAEVLDVKKGPRGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHSA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H  Q+GS ++PD LRFD  H +P++  ++  IE  VN++I Q +PV   + + 
Sbjct: 574 LRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS+
Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L+    
Sbjct: 689 AAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLENEVE 748

Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830
           K KL +   +LS    K  D      I++   + ++   K + D ++++    I++ + I
Sbjct: 749 KYKLLVVENELSSLYSKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKERDSKAIVLNI-I 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
            +  K ++L+  +++ + +   VD  ++  +V    GG GGGRP  AQ GG +  K D A
Sbjct: 808 QQGSKVTILMSCSKEAVKK--GVDCGKVVKEVCSVLGGKGGGRPDFAQGGGNDVLKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|229918435|ref|YP_002887081.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|229469864|gb|ACQ71636.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 880

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 367/920 (39%), Positives = 537/920 (58%), Gaps = 79/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF+  GH + PS+SL+P  DPTL++ NSG+   K  F G+  P    +   
Sbjct: 10  AQIRQMYLDFFKSKGHSVEPSASLVPVEDPTLLWINSGVATLKKYFDGRVIPANPRIVNA 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI   W+LLT +  + LD 
Sbjct: 70  QKSIRT----NDIENVGKTARHHTFFEMLGNFSVGEYFREEAITWGWELLTSDEWYGLDP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            RL +T++ +DEE+ ++W  + G+ AD+II +   DNFW + E GP GP +EIFFD+G  
Sbjct: 126 DRLSVTIHPDDEESKQIWMNL-GMPADRIIPL--EDNFWEIGE-GPSGPNTEIFFDRGPA 181

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+EIWN+VF Q+          LP+ +IDTGMGLER
Sbjct: 182 FGDDPTDPELYPGG------ENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA+VLQ+   N+D DLF  +I+ +E+++G  Y  + +  V  +VI DH+R+ SF I DG 
Sbjct: 236 MASVLQDVPTNFDTDLFMPIIRETEKISGDVYRQDSSKDVAFKVIADHIRTVSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA++LG   P M  L+  +   M   YP++ + K  I++ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDVVGDIMVDFYPQVNEKKDFIKKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L+ V          I++G  AF+LYDT+G PL++  +     
Sbjct: 356 IKNEEERFHETLNDGLAILNEVAKAQKAAGSNIISGQDAFRLYDTYGFPLELTIEYAEDH 415

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            +  +D   F +A+ EQR RAR       S+ + SG    I          + F+GY+ L
Sbjct: 416 QMT-VDEDGFKEAMNEQRERARQARADVESMQIQSGVLADITMP-------STFLGYNNL 467

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                    ++ + +++  GE+ +   +G++ +V+ DQTPFYAE
Sbjct: 468 E-----------------------TNAKIISLIHNGELADVVAAGEEAQVILDQTPFYAE 504

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GD G  +G+   L++ DV K   G  +H   VE G+ + E+++  ++D  +R+ +
Sbjct: 505 SGGQIGDKGQIVGEDFLLRVKDVSKAPNGQNLHTVTVESGVAKAEVAVTASVDQASRQAI 564

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL   LG HV+Q GS +TPD LRFD +H   +TS EL+SIE  VN+ I
Sbjct: 565 VKNHTATHLLHRALKDTLGEHVNQAGSLVTPDRLRFDFSHFGQVTSEELQSIERQVNEKI 624

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             ++ V    MN  DA A GA AL G KY D VRVVS      G +S  LCGG HVS+T 
Sbjct: 625 WASIGVDIEEMNIADAKAKGAMALFGEKYGDVVRVVS-----AGDYSVELCGGIHVSNTA 679

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI L  I+SES I AG RRIEA+TG  A   +  Q E L++ A  LK     V  RV+ +
Sbjct: 680 EIGLFKILSESGIGAGTRRIEAVTGAGAYEVMNQQIETLEAAAKLLKTKPLEVPARVQAL 739

Query: 764 WEEYRKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E ++++      K +L N+E  S       I  V  ++  +   D   L+S++D L+ 
Sbjct: 740 QAEIKEVERASESLKAKLANIEASSLTDAIETIGGVQLIAKRVDGQDMDALRSMVDDLKG 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K+ S +I+L G +  +K +++  VT+DL DR F+A  L +  A    GGGGGGRP MAQ+
Sbjct: 800 KLGSAVIIL-GSANGEKVNLVAGVTKDLNDRGFHAGKLIKEVATRC-GGGGGGRPDMAQA 857

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG +  K D+A+   + +++
Sbjct: 858 GGRDATKLDEALKFASHYVE 877


>gi|221195805|ref|ZP_03568858.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221184279|gb|EEE16673.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 882

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 371/914 (40%), Positives = 533/914 (58%), Gaps = 66/914 (7%)

Query: 1   MSN-----VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK 55
           MSN      + IR  FL FF+  G ++ PSSSL+P +DP+L+  N+GM  FK  + G + 
Sbjct: 1   MSNYKTMTTAEIRKNFLAFFESKGCKVYPSSSLVP-SDPSLLLANAGMNQFKEYYQGIKT 59

Query: 56  PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                 T+ QKC+R     ND+DN+G  NRH +FFEMLGNFSFGGY K  A   A + ++
Sbjct: 60  MKEIGATSCQKCLRT----NDIDNIG-DNRHLSFFEMLGNFSFGGYTKRDACTWAMEFIS 114

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             +   L   RLY TV+ +D+EA ++W  + G++ D I R+   DNFW+   TGPCGPCS
Sbjct: 115 SPEHLGLPLDRLYFTVFTDDDEAAEIWHSL-GVAEDHISRLGEEDNFWAAGPTGPCGPCS 173

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI+FDQG    G  PG  ++G+RY+E WNLVF Q+++Q       LP  +IDTGMGLER+
Sbjct: 174 EIYFDQGPEFSGEKPG--DDGDRYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERI 231

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNH--RVIVDHLRSSSFLIADGI 290
           A ++Q   +NY+ D+   LI+  E+++G +Y+ GN  V+   R++ DH R+ SF+I DGI
Sbjct: 232 AAIMQHAGSNYEGDIMTSLIELGEKLSGKRYQAGNEEVDRSLRILADHSRAVSFMIGDGI 291

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGR Y+LRR++R A+ + RL+G  +  M      +   +G AY EL++ ++LIE  
Sbjct: 292 LPGNEGRSYILRRLLRHAVYHGRLVGIQKTFMAEYANEVVRLLGDAYSELVEKRVLIEGI 351

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+ERFG TL+ G   L+  L  L  DE L+GDVAF L+DT+G P+D+ ++I  AR  
Sbjct: 352 LTAEEERFGTTLEAGESKLEDELKKLTGDECLSGDVAFLLHDTYGFPIDLTREI-AARAG 410

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL--LRGSKF 468
             ++   F+ A+ EQ+ RARA +     G  + +W +L ++   T F GY+   L G + 
Sbjct: 411 HAVNEAQFDAAMAEQKQRARASANRDAWGKAQSVWVALSDRLDETVFDGYNHNELEGCR- 469

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  V A+V+ G+ V+ A  G +VEVV D+TPFYAE GGQ+
Sbjct: 470 -----------------------VVALVKGGQEVDCAAVGDEVEVVLDRTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D + +Q++D + K   +  H   VE G L T   L+  ID   R  +  NH+
Sbjct: 507 GDTGTLSADNLFVQVSDTKHKEGNLIAHVGQVEEGELHTGDVLIAVIDTGRRELIRRNHT 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  ILGSHV+Q GS + PD LRFD TH + +TS EL  IE  +N  I    P
Sbjct: 567 ATHLLDAALKLILGSHVNQAGSLVAPDRLRFDFTHFEALTSDELARIEGMINAEIFAAKP 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +VT+IMN ++A A+GA AL G KY D VRVVSV  ED    S  LCGGTH  +T E+ L 
Sbjct: 627 IVTQIMNIDEAKAAGAVALFGEKYGDVVRVVSVGEEDHPF-SRELCGGTHAKNTAELGLF 685

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSESS+ A  RRIEA+T   A S++  +  +L  +A  LKV    V  RVE++  + R
Sbjct: 686 KIVSESSVGANSRRIEAVTSMGAISYVDERLVQLDMVAHGLKVRPEAVAARVEQLQSDLR 745

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVDS---KELKSVMDALQK 818
           +     A +K +        ++IA+    +H       +I+ +D    K+L+SV D ++ 
Sbjct: 746 E-----AHKKAEAATVGAGSNRIAEALHNAHELDGYRCVITRLDDLSGKDLRSVWDGIRD 800

Query: 819 KIQSGIIMLV--GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
                 +  V   ++ +KK ++L   T+  +   F+A  L +  A ++ GG GGGRP+MA
Sbjct: 801 ASDGHPVACVIASVTPDKKVALLAGATDTAVAAGFSAGTLIKDIAGLV-GGRGGGRPNMA 859

Query: 876 QSGGPNGNKADQAI 889
           Q+GG + +  D A+
Sbjct: 860 QAGGVDISGIDVAL 873


>gi|46447153|ref|YP_008518.1| alanyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626678|sp|Q6MB06|SYA_PARUW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46400794|emb|CAF24243.1| probable alanyl-tRNA synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 878

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 355/905 (39%), Positives = 518/905 (57%), Gaps = 48/905 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           SIR  FLE+F+K+ H+++ SSS++P +DPTL+F N+GM  FK++F G+    Y    T Q
Sbjct: 5   SIRRQFLEYFKKHQHQIVSSSSVLPHDDPTLLFNNAGMNQFKDVFLGKSYRDYNRAATSQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK +AI+ AW++ T+ F  +  R+
Sbjct: 65  KCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKTQAIRFAWEVSTQVFGFEPERI 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           + TV+ ED+E F+LW +   + A++I R    DNFW+M +TGPCGPCSE+ +D+G     
Sbjct: 125 WPTVFREDDETFELWTQY--VPAERITRFGEKDNFWAMGDTGPCGPCSELLYDRGSDYGN 182

Query: 186 GL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
              P     GER++E WNLVFMQF +Q    +  LPK SIDTG GLER+  +     + +
Sbjct: 183 ATKPSEDSSGERFLEFWNLVFMQFNRQTSGVQNPLPKPSIDTGAGLERVINLKMGVNSVF 242

Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           + D+ + +I   E ++G+ Y  +       RVI DHLR  SF IADG+ P+N  RGYVLR
Sbjct: 243 ETDILRSIIAQIELLSGIAYHPQDQQSAAFRVIADHLRCLSFAIADGVQPSNVDRGYVLR 302

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           +++RRA+ Y R L   +P +  +LP L + MGS YPEL++ +  I E L  E+E F +TL
Sbjct: 303 KVLRRAVRYGRTLKLEKPFLAEVLPQLVSTMGSDYPELVKGQDRIAEILTIEEEAFIRTL 362

Query: 363 DRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
            RG  +L+ V+       +I++GD AFKL DT+GLP++ +  I    GL  +D   + Q 
Sbjct: 363 KRGGNILNQVIEKSRASHQIISGDDAFKLKDTYGLPIEEILLIAKDSGLK-VDEPRYQQL 421

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
            EE + R+R     +     E I+    +  G T+F G+                     
Sbjct: 422 EEEAKQRSRHVHKTVHQIAGENIFADFVKVRGETKFAGF--------------------- 460

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
               N + S V  +   GE VEE  SGQ+  V   +TPFYAE GGQ+GDTG       + 
Sbjct: 461 --TQNSLKSSVVGLFVNGEFVEEMQSGQEGLVFLSETPFYAEMGGQVGDTGTLENSNSKF 518

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + D     +G+  H   +  G L+    +  +ID + R++++ NH+ATHLLH AL  IL
Sbjct: 519 SVEDCVVPYKGLIAHKGKLNTGSLKNGEMITASIDKKRRQKIANNHTATHLLHWALHQIL 578

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-I 660
           G H+ Q GS + P  LRFD +H K ++  E + IED VN  I +NLPV    +  E+A  
Sbjct: 579 GEHIKQAGSVVDPQRLRFDFSHHKALSLEESRQIEDLVNQKIRENLPVKCYEIKYEEAQK 638

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                   G KY   VRV+ ++Y      S  LCGGTH S+ G I L  I+ ES I AGI
Sbjct: 639 KEDIKQFFGEKYGSTVRVIDIDY------SKELCGGTHTSALGNIGLFRILKESGIAAGI 692

Query: 721 RRIEAITGQRARSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           RRIEA+TG  A   L  QDE  L++LA  LKV    V+ ++E++ EE ++   +L   K+
Sbjct: 693 RRIEAVTGAEAEL-LQRQDEDLLRTLAQQLKVPIHQVLEKLEKLQEENKQFIAELKEIKK 751

Query: 778 KLQLNVE-DLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K +LNV  +    KI  +   S +I E  +  +EL+  +D +  +I S +I+L G +   
Sbjct: 752 K-ELNVLINGFIKKIEQLGNTSVLILETALSVEELRLCVDLISDQIPSAVIIL-GAAFPD 809

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K  +L+ +++DL+ +  NA ++ ++   ++  G GGG+ H AQ GG       +A   + 
Sbjct: 810 KCQILVKISDDLVKQGINANEIIKILMPIV-EGSGGGKQHTAQGGGKKPAMLGEAFKQIR 868

Query: 894 SFLKK 898
            +LK+
Sbjct: 869 IYLKE 873


>gi|222527366|ref|YP_002571837.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|222451245|gb|ACM55511.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 894

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 367/918 (39%), Positives = 525/918 (57%), Gaps = 57/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TFL FF ++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124

Query: 123 RRLYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+   DE   D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++   Q    LP+ S+DTGMGLERMA 
Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRATMQP---LPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  +I    +  G   E  +     +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++ ++  +MG AYPEL++ + LI      
Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L GV+  +    ++++ G+ AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA +     G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERL-------S 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           DR                + V  ++  G+ +  A +G+ V++V D TPFYAE+GGQ+GDT
Sbjct: 470 DR----------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+K +   EL+ +E  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGE 704
            I   +DA+A GA AL G KY D VR+V++E        E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + IVSE SI +GIRRIEA+TG+ A   +  Q + L+ LA+ +      ++ R++ + 
Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINAQPAQLLERIDALL 753

Query: 765 EEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819
            E+  RK +L   + KL     DL   ++  V  +  + +EV++     L+ + + L+ K
Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + + +I+L G     K  +L +VT DL+ R  NAV L +  A ++ GGGGGGRP +AQ+G
Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALV-GGGGGGRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K   AI      L
Sbjct: 872 GRHPDKLAAAIGAAVEVL 889


>gi|299144219|ref|ZP_07037299.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518704|gb|EFI42443.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 874

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 351/910 (38%), Positives = 549/910 (60%), Gaps = 64/910 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ +L FF+   H +LPS SLIP ND +L+   +GM P K  FTG+  P  + VTT QK
Sbjct: 9   IRSLYLNFFESKQHLMLPSFSLIPKNDKSLLLIGAGMAPMKKYFTGELTPPSRRVTTCQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR G    D++NVG+T+RH TFFEMLGNFSFG YFK  AI  AW+ LT++ ++ +  L+
Sbjct: 69  CVRTG----DIENVGKTDRHATFFEMLGNFSFGDYFKREAITWAWEFLTEQIEISKDDLW 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY ED+EAF++W +   +  ++I+++  +DNFW + E GP GPCSEI+ D+GE    G
Sbjct: 125 VTVYHEDDEAFRIWNEEIKVPKERIVKLGKDDNFWEL-EVGPSGPCSEIYVDRGEAYGCG 183

Query: 187 ----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                PG   + +R+IE+WNLVF QF++        L   +IDTGMGLER+ATV+Q   N
Sbjct: 184 DKNCKPGC--DCDRFIEVWNLVFTQFDKDESGVYHPLKNPNIDTGMGLERLATVVQHTNN 241

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300
            ++ID  + +I+  E+++G KYE +  ++   RVI DH+R+ +F+I+D I P+NEGRGYV
Sbjct: 242 IFEIDAIQDIIREIEKISGYKYETDKKLDESVRVITDHIRAMTFMISDTIRPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETLRSEDERFG 359
           LRR +RRA  + R+LG  +  +  L   +    G+  YPELI+ +  I+  +++E+E+F 
Sbjct: 302 LRRFIRRAARHGRILGIKKSFLSELSDLIINSWGADYYPELIENRDNIKSVIKAEEEKFL 361

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA----GI 413
           +T+++G+ +L+  +  L   K +IL+G+ AFKLYDT+G P+D+  +IL    +     G 
Sbjct: 362 ETIEQGMSMLESHILDLKEKKLDILDGEYAFKLYDTYGFPVDLTAEILDENSIKLDRDGF 421

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D     Q    + +R  + ++G GS   EKI+  LK      +F+GY+            
Sbjct: 422 DKNMDAQRKRARAARDDSDNIGWGSHDNEKIYEGLK-----NEFVGYE------------ 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K  C+   I+L           V+  E+V++   G++  ++ D+TPFYAE+GGQ GDTG 
Sbjct: 465 KDECKANIIEL-----------VKLNELVDKLTKGERGIIILDKTPFYAESGGQAGDTGI 513

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHL 592
              D  ++++ D +K  +G+ +H   VE GI+ ++E+S    ID   R  +  NHS THL
Sbjct: 514 IESDKFKIKVIDTKKNVKGLHLHMVEVEEGIVEKSEVS--AKIDVIRRFNIRRNHSVTHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +  + +RFD TH + I   +L+ IED VN  I + LPV T 
Sbjct: 572 LHKALKEVLGNHVNQAGSEVLDNRMRFDFTHFEAIDKEDLQKIEDRVNQKIFEALPVKTT 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I N EDA   GA  L   KY+  VRVV++     G +S  LCGGTHVS+T EI +  I+S
Sbjct: 632 ITNPEDAYKLGAVGLFEEKYSSVVRVVTM-----GDYSMELCGGTHVSNTSEISMFKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G+RRIE+ITG    S+L   +      AS LK ++ +++ +++ + E  +  + 
Sbjct: 687 ENGISSGVRRIESITGPAVYSYLNNLENLRDESASTLKSNKSDIIQKIKLLTENVKAYEK 746

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + KL+   +++S       KI  +N++++  +EVD   L+++ D +++K+ S +++L
Sbjct: 747 QIEELKLKTAKDEVSEIIKNVKKINSINYVTYRFNEVDVNTLRNLADEVREKVGS-VVVL 805

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K + +  V++DL+  + +A ++ +  AKV  GGGGGGRP MA +GG + +K D
Sbjct: 806 FATEIDDKVNFVCAVSQDLVKQKISAGNIVKEVAKVT-GGGGGGRPDMATAGGKDASKID 864

Query: 887 QAIAGVASFL 896
            A+  + + L
Sbjct: 865 LALEEIKNIL 874


>gi|326204671|ref|ZP_08194527.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325985238|gb|EGD46078.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 879

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 344/907 (37%), Positives = 547/907 (60%), Gaps = 50/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  L S+ L+P NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERYLKFFESKGHLRLASAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  AI  AW+ +T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTEDLKMPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF +W K+ GL A++I+R+   DNFW    TGPCGPCSEI+FD+G   
Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-TGPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+E WN VF QF +  +     L   +IDTGMGLER+A + Q+  
Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNRDEQGNYTRLTHPNIDTGMGLERLACISQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D   +++    +  G++Y+ +    V+ RVI DH+RS++ ++ DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVWNILDYICKTAGVEYKKSEKTDVSIRVITDHIRSTTMMVCDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +P +  +   +  E   AYPEL +    I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKAGYIKKVIKIEEERFE 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+G+V+L+  +  +   K E++ G++ FKL+DT+G PLD+ ++I    GL GID   
Sbjct: 361 ATVDQGIVILNDFIDEIKAKKQEVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEDG 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++ QR +AR AH+    S  ++ ++  L +K   T F+GY+             ++
Sbjct: 420 FKKEMDAQRKKARDAHNSKDTSAWSDSVFDKL-DKSQKTAFVGYE------------NIV 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           C+           S++  IV+ GEIV+ A  G ++ V+ D+TPFYAE GGQ+GD+G  I 
Sbjct: 467 CE-----------SVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDSGALIA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               ++I +  K A+G F+H   VE G++ T  ++  +ID + R  ++ NH+ THLLH A
Sbjct: 516 KNGVIKIENCTKTADGKFLHTGFVETGLVETGSTVTASIDEKRRTAINRNHTVTHLLHKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L T+LG HV Q GS + P+ LRFD +H   +T  ELK +ED  N+ I  ++ V  + M  
Sbjct: 576 LRTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDMTNEAILNSMEVDVKEMPI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY + VRVV VE      +S  LCGGTH+ +T +  L+ I+ ES +
Sbjct: 636 DEAKKLGAMALFGEKYGNTVRVVKVED-----YSVELCGGTHLKNTAQAGLVKILGESGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RR+EA+TG+ A  +   ++  L  ++  LK +  + + +VE + +E +    ++  
Sbjct: 691 AAGVRRLEALTGEAAIRYYTERENLLNEVSQALKATPQDSLKKVESLGQELKNAEKEIEQ 750

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGIS 831
            + KL     +       +V  +  +++  D+ +   L++  D L+ K+ SG+I+L G  
Sbjct: 751 LRNKLVSGESESVLANAVEVKGVKVVMARFDTMDMEGLRNTGDMLKNKLGSGVIVL-GSG 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K S ++  T+D++ +  ++ ++ +  AK   GGGGGGRP MAQ+GG + +K D+A+ 
Sbjct: 810 YGDKVSFVVTATKDVVAKGIHSGNIIKEVAKT-AGGGGGGRPDMAQAGGKDLSKIDEALK 868

Query: 891 GVASFLK 897
              S ++
Sbjct: 869 SAVSIVE 875


>gi|288574979|ref|ZP_06393336.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570720|gb|EFC92277.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 878

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 355/908 (39%), Positives = 526/908 (57%), Gaps = 55/908 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F++F+   G +   S SL+P  DPTL+FT +GMVPFK  + G  +P   +  T QK
Sbjct: 9   IRRLFVDFWVSKGAKHYDSFSLVP-EDPTLLFTIAGMVPFKKYYLGIAEPDVDSAVTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND+DNVGRT RHHTFFEMLGNFS+GGYFK+ +I   W+ LT+   LD  R+Y
Sbjct: 68  CVRT----NDIDNVGRTARHHTFFEMLGNFSWGGYFKKESITWGWEFLTEVIGLDPDRMY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---ECI 183
            T+Y +DEEAF +W K  GL   +I+R   ++NFW M   GPCGP SEI +DQG    C 
Sbjct: 124 ATIYKDDEEAFDVWNKDVGLPDSRILRFGEDENFWFMGPQGPCGPDSEILYDQGPAFSCG 183

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   PG   E +RY+EIWN VF Q+++Q       LP+ +IDTGMGLER+ +++Q  +N+
Sbjct: 184 PDCKPGC--ECDRYLEIWNHVFTQYDRQEDGSLLPLPRKNIDTGMGLERLTSLVQGVSND 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           ++ DLF+ ++     + G+ Y G+ +   +  +VI DH+R+ SF+IADGILP+N+G+GYV
Sbjct: 242 FETDLFRPIMDHVCDMAGIGY-GDGLQGDMAAKVISDHIRAVSFMIADGILPSNDGQGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  Y RL+G  +  +  L+P +   M   Y EL+  +L IE+ +  E++RFG+
Sbjct: 301 LRRLLRRAARYGRLIGLKKAFLTDLIPNVMDIMADPYRELLDNRLTIEQVVAVEEKRFGR 360

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++G  LL   +S +  G   IL GDVAF+LYDT+G PL++ ++I   +GL+ +D   F
Sbjct: 361 TLEQGSDLLHQEISSVFAGDGSILPGDVAFELYDTYGYPLELTREICEEKGLS-VDEDGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + +E QR RAR+ S    S  T  ++  L  ++G T F+GYD L     ++ D  VL  
Sbjct: 420 RREMEVQRERARSSSKQANSVMTGDLYAELLSEHGPTPFLGYDSLE----LEADLTVL-- 473

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                            +++G++V+ A +G  VE +  +TPFYAE GGQ+GD G   GDG
Sbjct: 474 -----------------MKEGKVVDSASTGDSVEFLLSRTPFYAERGGQVGDQGFVKGDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ D    A  + VH  IV  G +++   +   +D   R  ++ NH+ATHLLH +L 
Sbjct: 517 FIVEVEDTIHPAGDLIVHRGIVTSGTVKSGCEVRAMVDKDRREAITKNHTATHLLHESLI 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV QNGS ++   LRFD TH +P++S EL  +E  VN  I  N  +     +   
Sbjct: 577 RVLGGHVRQNGSLVSDRFLRFDYTHFEPLSSGELDEVELMVNQEIQNNKTIKVDETDLAT 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL   KY D+VRVVS+        SS LCGG HV +TGEI L  I+++ SI +
Sbjct: 637 AKNLGAKALFEEKYGDKVRVVSISE-----FSSELCGGVHVCATGEIGLFKIINDESIGS 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRI A+TG  A  +       LK L+S L V    ++ +++ + EE R+LQ    +  
Sbjct: 692 GIRRITAMTGMNAFRNYQNITGTLKELSSNLGVRPARLIEKIKSMDEENRELQKKLQRYT 751

Query: 779 LQLNVEDLSCHKIAD-----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++  ++DL    +       V+     I  V   +L+ V D+++ K    + +L+    +
Sbjct: 752 IRSAMDDLRESVVKTDIGQGVSLYVASIEGVTPDQLREVGDSIKDKDTGSVTLLMSSDGD 811

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA----DQAI 889
           +   V +V  + +    +   + +  A +  GG GGGRP MAQ+GGP  +      D+A+
Sbjct: 812 RTQMVCMVGGDAVEKGLHGGKIVKEVAALF-GGKGGGRPTMAQAGGPKIDDMKDILDKAV 870

Query: 890 AGVASFLK 897
           A V  ++K
Sbjct: 871 AIVKGYVK 878


>gi|163849369|ref|YP_001637413.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|205830020|sp|A9WCR2|SYA_CHLAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163670658|gb|ABY37024.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
          Length = 894

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 367/918 (39%), Positives = 525/918 (57%), Gaps = 57/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TFL FF ++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124

Query: 123 RRLYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+   DE   D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++   Q    LP+ S+DTGMGLERMA 
Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRATMQP---LPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  +I    +  G   E  +     +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++ ++  +MG AYPEL++ + LI      
Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L GV+  +    ++++ G+ AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA +     G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERL-------S 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           DR                + V  ++  G+ +  A +G+ V++V D TPFYAE+GGQ+GDT
Sbjct: 470 DR----------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+K +   EL+ +E  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGE 704
            I   +DA+A GA AL G KY D VR+V++E        E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + IVSE SI +GIRRIEA+TG+ A   +  Q + L+ LA+ +      ++ R++ + 
Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINTQPAQLLERIDALL 753

Query: 765 EEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819
            E+  RK +L   + KL     DL   ++  V  +  + +EV++     L+ + + L+ K
Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + + +I+L G     K  +L +VT DL+ R  NAV L +  A ++ GGGGGGRP +AQ+G
Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALV-GGGGGGRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K   AI      L
Sbjct: 872 GRHPDKLAAAIGAAVEVL 889


>gi|302335910|ref|YP_003801117.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319750|gb|ADK68237.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 880

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 353/902 (39%), Positives = 513/902 (56%), Gaps = 54/902 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L FF+  G  L PSSSL+P  DP+L+ TN+GM  FK  + G +       T
Sbjct: 9   TTAEIREDYLRFFESKGCRLYPSSSLVP-EDPSLLLTNAGMNQFKEYYQGTKTMREIGAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QKC+R     ND+DN+G  +RH +FFEMLGNFSFGGY K  AI  AW+ +T  +   L
Sbjct: 68  SCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKADAIAWAWEFITAAEHLGL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY+TV+++D+EA +LW    G++ D I R+   DNFW+   TGPCGPCSEI+FDQG
Sbjct: 123 PKDRLYMTVFEDDDEAIELWHA-QGVAYDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQG 181

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G  PG  ++GERY+E WNLVF Q+++Q       LP  +IDTGMGLER+A ++Q +
Sbjct: 182 PAFEGERPG--DDGERYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQHE 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            +NY+ D+ + LI   EQ+ G++Y      +   R++ DH R+ +F+I DGILP+NEGRG
Sbjct: 240 GSNYEGDVLRTLIGVGEQLAGVRYREGAATDTSLRILADHSRAVTFMIGDGILPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RL+G     +      +   M   YP+L++ + LI+  + +E+ERF
Sbjct: 300 YVLRRLLRRAVYHGRLMGVHGSFLPTYAHEVTRLMADVYPQLVENQALIDGIISAEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           G TLD G   L   L  L   E L+G+VAF+L+DT+G P+D+ ++I  A G   +D+ +F
Sbjct: 360 GATLDAGEGNLTAALGRLDAGEALSGEVAFRLHDTYGFPIDLTREIAAAAGHE-VDMAAF 418

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + A+ +QR RAR  +     G +  +W SL ++ G T+F GYD                 
Sbjct: 419 DGAMAKQRERARQAANRDAWGASNNVWVSLSDRLGETEFCGYDE---------------- 462

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               D   G    V AIV+ G  V+ A  G+ VEVV D+T FY E GGQ GD+G  + + 
Sbjct: 463 ----DTVEGAR--VLAIVRDGSEVDVACRGEHVEVVLDRTSFYGEMGGQQGDSGKLVCED 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L ++D + +  G   H   V  G LR   S+   ID+  R  +  NH+ATHLL  AL 
Sbjct: 517 ATLAVSDAKHRDGGFVSHVGEVTAGELRVGESVRAVIDHGRRELIRRNHTATHLLDAALK 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HVSQ GS + P  LRFD TH + +++ E+  +E  VN  I    PVVT +M  E+
Sbjct: 577 RVLGDHVSQAGSLVGPSRLRFDFTHFEAMSAEEMARVEGMVNAEIFAAEPVVTTVMGIEE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A ASGA AL G KY D VRVVS    D    S  LCGGTH  +T E+ L  IVSE S+ +
Sbjct: 637 AKASGAVALFGEKYGDVVRVVSTGASD-EPFSRELCGGTHARNTAELGLFKIVSEGSVGS 695

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
            +RR+EA+T   A  +L  +  ++  +A+ L+    +V  RVE++     K +    + K
Sbjct: 696 NVRRLEAVTSMGAIEYLDERLAQIDQVAAGLRCRPSDVAARVEQL-----KAEKAETEHK 750

Query: 779 LQLNVEDLSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L+  +   S + +AD             +   +  V  KEL+S  D+++ ++      ++
Sbjct: 751 LRAALTGGSSNAVADAIASAIDRGAYRLVLARLDGVSGKELRSAWDSVRDRLGVDCACVL 810

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
               + K  +L   T+  +   F+A D+ R S   L GG GGG+P MAQ+GG + +  D 
Sbjct: 811 ASESDGKVGLLAAGTDGAVSAGFSAGDIIR-SVAGLVGGRGGGKPAMAQAGGSDPSGIDA 869

Query: 888 AI 889
           A+
Sbjct: 870 AL 871


>gi|325661656|ref|ZP_08150280.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472183|gb|EGC75397.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 879

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 366/910 (40%), Positives = 527/910 (57%), Gaps = 58/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AIQ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +DEEAF++W K  G+ A++I +    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     +   + Y  + +  V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E+++F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKDFIFNVLTQEEDKFD 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + +  +++L+G+ AFKLYDT+G PLD+ ++IL  +G  GID   
Sbjct: 361 KTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419

Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F  A+E+QR +AR      + +G  +   ++I  S+      T+F+GYD L         
Sbjct: 420 FQAAMEKQRVQAREARKETNYMGADATVYDEIDPSV-----TTEFVGYDTL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + EI E    GQ+  +  ++TPFYA  GGQ GDTG
Sbjct: 466 --------------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + +  K   G F H   V +G+ RT  ++ L +  + R     NHSATHL
Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFRTGDTVTLEVRSKERLNTCKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H   +T  E++++E  VN+ IA+N PVVT 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTKEEIEAVEALVNEEIAKNNPVVTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +MN E+A  +GA AL G KY + VRVV++     G  S  LCGGTHVS+TG I    IVS
Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES + AG+RRIEA+TG    ++   Q++KL   A  LK +  N+  ++  +  E + L  
Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746

Query: 771 QLIHAKRK-LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   K K  Q  V D+     +I  V  ++  + +VD   L+ + D L++K+  G++++
Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              +   K S++   TE  L +  +A +L +  A ++ GGGGGGRP+MAQ+GG N    D
Sbjct: 807 ASAAG-GKVSLMATATEGALKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPEGID 864

Query: 887 QAIAGVASFL 896
            A++     L
Sbjct: 865 AALSKAKEVL 874


>gi|228993127|ref|ZP_04153049.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228999175|ref|ZP_04158757.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006723|ref|ZP_04164357.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754584|gb|EEM03995.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760792|gb|EEM09756.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228766586|gb|EEM15227.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 880

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 356/914 (38%), Positives = 537/914 (58%), Gaps = 65/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY G ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRGGDVEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++   ++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTAISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHTGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQSLHKIVVEEGTLTKESAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 ILHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746

Query: 772 LIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                  L   + ++    + D       VN ++  ++  D   L+++MD L+ K++S +
Sbjct: 747 --KENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLESAV 804

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++L  ++ E K ++L  VT+DL+++ ++A  L +  A    GGGGGGRP MAQ+GG N  
Sbjct: 805 VVLAAVN-EDKVNILAGVTKDLINQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPA 862

Query: 884 KADQAIAGVASFLK 897
           + D A+A V  ++K
Sbjct: 863 QVDDALAFVEEYVK 876


>gi|30264458|ref|NP_846835.1| alanyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529915|ref|YP_021264.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187280|ref|YP_030532.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|65321756|ref|ZP_00394715.1| COG0013: Alanyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165872747|ref|ZP_02217375.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636505|ref|ZP_02394802.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167638586|ref|ZP_02396862.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689638|ref|ZP_02880820.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170709398|ref|ZP_02899809.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653242|ref|ZP_02935494.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190566972|ref|ZP_03019888.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227817167|ref|YP_002817176.1| alanyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229602565|ref|YP_002868676.1| alanine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684144|ref|ZP_05148004.1| alanyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254736491|ref|ZP_05194197.1| alanyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741529|ref|ZP_05199216.1| alanyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751372|ref|ZP_05203409.1| alanyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757704|ref|ZP_05209731.1| alanyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|33301676|sp|Q81LK0|SYA_BACAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30259116|gb|AAP28321.1| alanine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505063|gb|AAT33739.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181207|gb|AAT56583.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164711523|gb|EDR17072.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167513434|gb|EDR88804.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167528098|gb|EDR90895.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170125697|gb|EDS94613.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666408|gb|EDT17189.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081524|gb|EDT66596.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190561963|gb|EDV15932.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227003572|gb|ACP13315.1| alanine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229266973|gb|ACQ48610.1| alanine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 880

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 357/913 (39%), Positives = 540/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           GC + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AGIRRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGIRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|121535965|ref|ZP_01667759.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305457|gb|EAX46405.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 869

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 365/900 (40%), Positives = 528/900 (58%), Gaps = 61/900 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF    H +LPS+SLIP NDPTL+   +GM PFK  FTG+ KP +  + T 
Sbjct: 4   NELRKKFLQFFASKDHLVLPSASLIPENDPTLLLIGAGMAPFKPFFTGKMKPPHPRIATC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR G    D++NVGRT RHHTFFEMLGNFSFG YFK  AI  +W+ +T+  +L + +
Sbjct: 64  QKCVRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKREAITWSWEFITEHLNLPKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT++ ED+EAF++W K  G+  D+I+R+   DNFW +   GPCGPCSEI  D GE   
Sbjct: 120 LWITIHTEDDEAFEIWHKEVGVPVDRIVRL--EDNFWEIG-PGPCGPCSEIHIDLGEERG 176

Query: 185 GGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            G P    G S   +RY+EIWNLVF Q+++  +     L K +IDTG GLER+A+VLQ K
Sbjct: 177 CGKPDCRVGCS--CDRYLEIWNLVFTQYDRDEEGNYTPLAKKNIDTGAGLERIASVLQNK 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +N++ DL   +I+ + +V G+ Y       V+ +VI DH RS + +IADG+LP+NEGRG
Sbjct: 235 RSNFETDLLFPIIEHTAKVAGVTYGESAKTDVSLKVIADHGRSLTIMIADGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG  +P +  ++  +       YPE+   K  I++ ++ E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIDKPFLADIVDVVANIFAEPYPEINDKKAYIKKVVQLEEERF 354

Query: 359 GKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TL +G+ LL+    VL   GK  +L+G   FKLYDT G P ++ Q+IL    +  +D 
Sbjct: 355 NATLAQGMELLNSHIRVLKESGK-TVLDGATGFKLYDTFGFPWELTQEILAEHDME-LDR 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKEDRK 474
             F+QA++EQR RARA          E++   + +  G  TQ + YD             
Sbjct: 413 AGFDQAMDEQRQRARAAR----QENEERV--VVPDLSGLVTQELKYD------------- 453

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ V  ++Q G++VE A  GQ+V ++ D TPFYAE GGQ+GD+G  
Sbjct: 454 ----------PQAESARVVLVLQDGKVVEAAHDGQEVALILDVTPFYAEGGGQVGDSGTL 503

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + +   +K  +G   H   V  G ++    + + +D   RR  S NH+ATHLLH
Sbjct: 504 TAQYGTVAVVTARKLPDGTIYHVGSVTEGTIKPGDMVKIAVDAARRRDASRNHTATHLLH 563

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + PD LRFD +H  P+T  +L  +E+ VN++I +N+ V     
Sbjct: 564 AALKKVLGEHVNQAGSYVGPDRLRFDFSHFAPVTVEQLAEVENMVNEVILRNIAVGRIET 623

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +E A   GA AL G KY +RV VV ++       S  LCGGTHVSST EI    IVSE+
Sbjct: 624 TQELAREMGATALFGEKYGERVSVVIIDD-----FSKELCGGTHVSSTAEIGQFKIVSET 678

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            I +GIRRIEA+TG  A  ++  ++E L++ A  LK    ++VGR++ +    + L  +L
Sbjct: 679 GIGSGIRRIEAVTGYAALEYIRSREEILQAAALALKSRPEDLVGRIDGVLARVKDLEKEL 738

Query: 773 IHAKRKL-QLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL +  VEDL  +K  I  V  ++  +   D  +L+S  D ++ +++SG++ L  
Sbjct: 739 AALKTKLAKFAVEDLLANKKEINGVALVAGQVDAADMDDLRSTADLVRDRLRSGVVALGA 798

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ EK   V++   + +    +A ++ +  AKV  GGGGGGRP MAQ+GG    K   A+
Sbjct: 799 VTGEKVNFVVMATADAVARGVHAGNIIKEMAKV-AGGGGGGRPDMAQAGGKQPAKLADAL 857


>gi|260893293|ref|YP_003239390.1| alanyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865434|gb|ACX52540.1| alanyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 874

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 358/897 (39%), Positives = 537/897 (59%), Gaps = 57/897 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL++F++ GH +LPS+SLIP  DP+L++T +GMVPFK  FTG  KP ++ V T QK
Sbjct: 6   IRQRFLDYFRRKGHVILPSASLIPAGDPSLLWTAAGMVPFKPYFTGAAKPEFRRVATCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D+++VG+T RH TFFEMLGNFSFG YFK  AI +AW+ +TKE  LD  RL+
Sbjct: 66  CLRT----QDIESVGKTARHLTFFEMLGNFSFGDYFKAEAIAMAWEFVTKELGLDIDRLW 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183
            +V+++DEEAF+LW K+ G+  ++I+R+  + NFW +   GPCGPCSEI++D G    C 
Sbjct: 122 FSVFEDDEEAFELWCKM-GVKPERIVRLGRDTNFWEIG-VGPCGPCSEIYYDFGPAFACG 179

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P    G   + +RY+EIWNLVF+Q+ +  K     L    IDTGMGLER+ATVLQ  T+ 
Sbjct: 180 PDCHVGC--DCDRYLEIWNLVFIQYYRDEKGNYLPLENKGIDTGMGLERVATVLQGVTSP 237

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +  DLF+ ++ A+E+          +   +VI DH+R+ +F +A+G+LP+NEGRGYV+RR
Sbjct: 238 FATDLFRDIVAAAERELRSPVPNRRV---KVIADHVRAVTFGVAEGVLPSNEGRGYVIRR 294

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RRA+ Y  L G  EP +  +  A+C +MG  YPEL+  +  I   +R+E+ERF  TL 
Sbjct: 295 LLRRALLYGVLAGREEPFLGKVAAAVCDKMGEVYPELVANREHILRVIRAEEERFLGTLS 354

Query: 364 RGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +G+ LL    + VL+  GK  +L G+ AF+LYDT+G PL++ ++I   +GLA +D   F 
Sbjct: 355 QGMELLNRNIEQVLARGGK--VLPGEEAFRLYDTYGFPLELTEEICAEKGLA-VDKEGFK 411

Query: 420 QALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + +E QR RAR     +   G  E+ +  L+E+ G+  F+GY+ L               
Sbjct: 412 REMEAQRERARRARETVEYLGERERFYRELREEKGSVDFVGYEQL--------------- 456

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                  N  S +V A+V++ +    A +G++VEVV D TPFYAE GGQ+ D G      
Sbjct: 457 -------NTRSRVV-ALVKEAKPQSSASAGEEVEVVLDVTPFYAEKGGQVSDKGVLRFPS 508

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +  V++  EG+ VH   V++G L+    +   +D + RR+ + NH+ATHLLH AL 
Sbjct: 509 GEALVEYVEQPVEGMVVHRVKVQKGELKVGDEVEAAVDAERRRRTARNHTATHLLHQALK 568

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV Q GS + PD LRFD  H + +T  E+K +E  VN+I+   LPVVT   + E+
Sbjct: 569 EILGPHVKQAGSLVAPDRLRFDFDHYQALTPEEIKRVEKRVNEIVLAALPVVTFTTSLEE 628

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY + VRVV +     G +S  LC GTH+ +T E+ +  IV+E+S+ A
Sbjct: 629 AQAMGAVALFGEKYGETVRVVKI-----GDYSIELCAGTHLRNTAEVGVFKIVAEASVAA 683

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----QLIH 774
             RRIEA+TG+RA ++    ++  + +A  LK     +  +VE   +E + L    + + 
Sbjct: 684 NTRRIEAVTGERALAYFEELEDDYRRIAFLLKAPARGLSQKVEAWLQEMKALARENEALR 743

Query: 775 AKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            K  L    E L    +I  V  ++  +   D+  L+S+ D L++K+ +  ++L+G S +
Sbjct: 744 DKLALYTMQELLDKVQEIDGVKVLAAKVEAPDTARLRSLADLLREKLGNASVVLLGASGD 803

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            K ++++  T   + R  NA  + +  A+V+  GGGGGR    Q+GG N  +  +A+
Sbjct: 804 GKVNLVVAATPGAVARGINAAQIVKAMAQVV-EGGGGGRAEFGQAGGKNPGRLGEAL 859


>gi|15618801|ref|NP_225087.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836425|ref|NP_300949.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752144|ref|NP_445511.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242254|ref|NP_877195.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|6707750|sp|Q9Z714|SYA_CHLPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4377211|gb|AAD19030.1| Alanyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189887|gb|AAF38754.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979266|dbj|BAA99100.1| alanyl tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|33236765|gb|AAP98852.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|269302680|gb|ACZ32780.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 872

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 339/888 (38%), Positives = 507/888 (57%), Gaps = 52/888 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR+ FL+F+    H +LPSS + P NDP+++FTN+GM  FK+IF  +EK  Y   TT 
Sbjct: 4   NTIRSNFLKFYANRHHTILPSSPVFPHNDPSILFTNAGMNQFKDIFLNKEKVSYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK  AI  AW++    F+ +   
Sbjct: 64  QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKAEAIAFAWEVSLSVFNFNPEG 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+  + L  D+I R+T  DNFWSMA TGPCG CSE+ FD+G    
Sbjct: 124 IYATVHEKDDEAFALWE--AYLPTDRIFRLTDKDNFWSMANTGPCGYCSELLFDRGPSFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + ++     LP   +DTG GLER+ +++      
Sbjct: 182 NASSPLDDTDGERFLEYWNLVFMEFNRTSEGSLLALPNKHVDTGAGLERLVSLIAGTHTV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           ++ D+ + LI  +EQ++G  Y  ++     RVI DH+RS SF IADG+LP N  RGYVLR
Sbjct: 242 FEADVLRELIAKTEQLSGKVYHPDDSGAAFRVIADHVRSLSFAIADGLLPGNTERGYVLR 301

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           +I+RR++ Y R LG+  P +  ++P+L   MG AYPEL  +   I++ L  E+E F KTL
Sbjct: 302 KILRRSVNYGRRLGFRNPFLAEIVPSLADAMGEAYPELKNSLSQIQKVLTLEEESFFKTL 361

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           DRG  LL  VL        ++G+ AFKL DT+G+P+D +  +L       +D+ +F++  
Sbjct: 362 DRGGNLLQQVLKSSSSSSCISGEDAFKLKDTYGMPIDEIS-LLAKDYDYSVDMDTFHKLE 420

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           +E + R+R + +    GT+E I+    E +  ++FIGYD L    F              
Sbjct: 421 QEAKERSRKNVVQ-SQGTSESIY---NELHLTSEFIGYDHLSCDTF-------------- 462

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDGI 539
                    ++AI+ +  IV      Q+  +V   +PFYAE GGQ+GD+G   C+ G  I
Sbjct: 463 ---------IEAIISKDHIVSSLQEKQEGAIVLKVSPFYAEKGGQVGDSGEIFCSEGTFI 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +T       G+ VHH  + +G L  E ++   ++   R++++ NH+A HLLH AL  
Sbjct: 514 ---VTHTTSPKAGLIVHHGRISQGSLTVEAAVTAQVNRYRRKRIANNHTACHLLHKALEI 570

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H+ Q GS +    +R D TH + I+  +L  IE  VN+ I +N PV  R     D 
Sbjct: 571 TLGDHIRQAGSYVDDTKIRLDFTHPQAISPEDLLCIETLVNESIRENEPVDIREALYSDV 630

Query: 660 I-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           + +S      G KY+D VRVVS        HS  LCGGTH  +TG+I    I  E ++  
Sbjct: 631 MNSSEIKQFFGDKYSDVVRVVSAG------HSHELCGGTHAEATGDIGFFRITKEHAVAM 684

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLI 773
           GIRRIEA+TG++A + +  Q E L+ +A+ L+V +  +V R+    +E ++      +L 
Sbjct: 685 GIRRIEAVTGEKAEATVHQQSEVLEEIATLLQVPRDQIVSRLTATLDERKQQDKRLNELE 744

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++  + +L+    +CH+   +  + H ++E ++  L+     L ++I   +I L    K 
Sbjct: 745 NSLIQTKLDKLIHNCHQRQGITCLVHHLAEHENHRLQQYAQCLHQRIPEKLISLWTTEKN 804

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            K  VL  V++DL+ +  +A DL + +     GG  GG+   AQ   P
Sbjct: 805 GKYIVLSRVSDDLITQGVHAQDLLK-AVLTPCGGRWGGKDQSAQGSAP 851


>gi|255321362|ref|ZP_05362522.1| alanyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255301515|gb|EET80772.1| alanyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 849

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 359/909 (39%), Positives = 537/909 (59%), Gaps = 85/909 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L FF   GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180
           Y+TV++ D+EAF LW++   ++ ++I R   +DNFW M +TGPCGPCSEIF+DQG     
Sbjct: 122 YVTVHESDDEAFALWEQ--HIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHFN 179

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E   GG      +G+R++EIWNLVFMQ+E+ +  +   LPK SIDTGMGLER+  +++
Sbjct: 180 TPEDYMGG------DGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIME 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +NYD  LF  LI+   ++ G  Y   +  ++RVI DH+RS +FL+A G     EGRG
Sbjct: 234 GKFSNYDSSLFMPLIEEVAKLCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRG 293

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E +R E+ERF
Sbjct: 294 YVLRRILRRAIRHGYLLGIREPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIRLEEERF 353

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+  GL L +  L+     +I +G  AFKLYDT G PLD+  D+L  +GL  +D   F
Sbjct: 354 LATIASGLELFESELART--KDIFSGKAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKF 410

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ + EQ++RA+A   G G  + +  + +L EK+G  +F GY+ L               
Sbjct: 411 DELMSEQKARAKAAWKGSGDKSAKGDFKALLEKFGENKFSGYEEL--------------- 455

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               + T+ V +++    ++ +I++   +G++   +FD TPFYA++GGQ GD+G   G  
Sbjct: 456 ----ERTSRVLALLDEDFKETQILK---AGEQGWAMFDVTPFYAQSGGQAGDSGEIEGVA 508

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D QK   G+ + +  V++  L+   ++ L +  Q R +++ +HSATHLLH AL 
Sbjct: 509 ---DVLDTQKFF-GLNLSNVAVKKE-LKIGDTVKLKVSEQ-RAEIARHHSATHLLHAALR 562

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           ++LG+H++Q GS +    LRFD +H K +T+ EL  IE+ VN  IA+++   T IM+ E+
Sbjct: 563 SVLGTHIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNSAIAESIAAKTEIMDIEE 622

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL G KY D+VRV+S      G  S  LCGGTHV++  +I   +I  E  + A
Sbjct: 623 AKNSGAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVANLSQIGAFFITKEGGVSA 677

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+  + A            +LA   +       G +EE+  E +  + ++A +K
Sbjct: 678 GVRRIEAVCSKAAL-----------NLAKAWR-------GEIEELKTELKSAEPMNAVKK 719

Query: 779 LQLNVEDLS--------CHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L+  ++ L          H +A  +VN     ++ +D  ++K+ +D  + + +   I+LV
Sbjct: 720 LKAEIKSLKDKTKQAKDAHALAVVNVNETKLCVAVIDGGDIKATIDEFKNENEKAAILLV 779

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +++E K ++   V    L    A +  + +A++L GG GGG+   A +GG N    + A
Sbjct: 780 QVNEEGKIAMAAGVKNAPL---KAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDA 835

Query: 889 IAGVASFLK 897
           I     F K
Sbjct: 836 IRQALEFAK 844


>gi|6707748|sp|Q9XDM3|SYA_AQUPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4587716|gb|AAD25871.1|AF027500_1 alanyl-tRNA synthetase [Aquifex pyrophilus]
          Length = 871

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 360/898 (40%), Positives = 533/898 (59%), Gaps = 48/898 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T+ QK
Sbjct: 8   IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L + RLY
Sbjct: 68  CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKERLY 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY +DEEA+++W +  G+ +++I R+   DNFW M +TGPCGP SEI+ D+GE     
Sbjct: 128 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDTGPCGPSSEIYVDRGE----- 182

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E  ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +N++I
Sbjct: 183 ---EYEGEERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEI 239

Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D+   LI+  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV+RRI
Sbjct: 240 DIIYPLIEFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRAM +   LG TEP +   +  +   M   YPEL  ++  ++  ++ E+ERF +TL  
Sbjct: 300 LRRAMRFGYQLGITEPFLYKGIDLVVDIMKEPYPELELSRDFVKGIVKGEEERFIRTLRS 359

Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           G+  +  V+     +  + L G   F  YDT+G P+D++Q+I   +GL  ID+  F   L
Sbjct: 360 GMEYIQEVIEKALSEGRKTLTGKEVFTAYDTYGFPVDLIQEIAKEKGLE-IDLEGFQCEL 418

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RAR  S  + +   + ++  LKE    ++F+GY+ L                   
Sbjct: 419 EEQRERARK-SFKIETKEVKPVYAHLKELGITSRFVGYEHLE------------------ 459

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  + V  I+   EIV E   G++ E++  +TPFY E GGQ+GD+G    D    +
Sbjct: 460 -----YETEVLGIIVGDEIVSEIKEGEEGEIILRETPFYPEGGGQIGDSGIIETDKGIFK 514

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D Q+  EGI VH   + +G +  +  +   +D + R  +  NH+ATHLLH AL  +LG
Sbjct: 515 VEDTQRPTEGIIVHIGKLLKGKISVKDIVHARVDKERRWDIMRNHTATHLLHAALRNLLG 574

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV Q GS +    LRFD TH  P+T  E+K IE+ VN+ I +NLPV    M  ++A+ +
Sbjct: 575 EHVRQAGSLVADKYLRFDFTHFSPLTEEEIKRIEELVNEKIRENLPVSVMEMAYQEALQT 634

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY +RVRV+S      G  S  LCGGTHVS+TG+I    I+SESS+ AG+RR
Sbjct: 635 GAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGAGVRR 689

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---L 779
           I A TG+ A +    +   LK +++ L V +  VV +VEE+ EE ++ +    K +   L
Sbjct: 690 IVAQTGRWAVNTAFEEHTTLKKVSNALGVKEDEVVQKVEELKEEIKEKEKEIQKLRQEIL 749

Query: 780 QLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +L + E +   +  ++     +  +V+ +EL+++ D L+++    ++ +    KE K + 
Sbjct: 750 KLQIREKVKEERHRELTLYYGVFEDVEPEELRNLADILRQRTGKDVVFIAS-KKEGKINF 808

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +I  ++ +     A +L R     +  GGGGGR  +AQ GG   +K D+++  +   L
Sbjct: 809 VIASSKGISKEVRANELIR-QVGKVLKGGGGGREDLAQGGGKAPDKFDESVKLLKELL 865


>gi|254724685|ref|ZP_05186468.1| alanyl-tRNA synthetase [Bacillus anthracis str. A1055]
          Length = 880

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           GC + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|118475098|ref|YP_892193.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|205830013|sp|A0RPR0|SYA_CAMFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118414324|gb|ABK82744.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 845

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 363/903 (40%), Positives = 532/903 (58%), Gaps = 77/903 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF+  GHE++ S+ L+P +D TL+FTN+GMVPFK+IFTG   +P     T+ Q
Sbjct: 3   IRKEYLDFFKSKGHEIITSAPLVP-DDATLLFTNAGMVPFKSIFTGDVPRPNPPIRTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L + +L
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAISYAWEFVTEVLKLPKDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180
           Y+TV+++D+EA++LW+K   +  D+I R    DNFW+M +TGPCGPCSEIF+DQG     
Sbjct: 122 YVTVHEKDDEAYELWQKF--IQKDRIYRFGDKDNFWAMGDTGPCGPCSEIFYDQGSEHFN 179

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E   GG      +G+R++EIWNLVFMQFE+        LPK SIDTGMGLER+  + +
Sbjct: 180 SDEDYMGG------DGDRFLEIWNLVFMQFERSKDGTMTPLPKPSIDTGMGLERVTAIKE 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +K +NYD  LF  LI    ++   +YE     ++RVI DH+RS +FL+A G+    EGRG
Sbjct: 234 DKFSNYDSSLFMPLINEVAKLCHKQYEYKTGASYRVISDHIRSVTFLLAQGVNFDKEGRG 293

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  EP M  L+  +   MG  Y  L + K  ++E ++ E+ERF
Sbjct: 294 YVLRRILRRAVRHGYLLGIKEPFMYKLVDKVVELMGEHYSYLKEKKEYVKELIKLEEERF 353

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+  GL L +  L+    + + +G+VAFKLYDT+G PLD+  D+L  +GL+ +D   F
Sbjct: 354 LATIVAGLDLFNEELAKTSSN-VFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VDEAKF 411

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           +  + EQ++RA+A   G G    E   F +L E++G  +FIGYD L+ S           
Sbjct: 412 DALMNEQKARAKASWKGSGDAAKESGDFKTLLEEFGENKFIGYDNLKSS----------- 460

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      S ++  +  + + V E  +G+   V+ D TPFYA++GGQ GDTG  +G+
Sbjct: 461 -----------SKVLALLNSEFKRVNELKNGEIGYVMLDSTPFYAQSGGQCGDTGM-LGE 508

Query: 538 GIRLQITDVQK----KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               Q  D +K        I   ++I    I+  E+SL       NR ++  +HSATHLL
Sbjct: 509 N---QALDTKKYFGLNLSMIEAKNSIKIGDIVLCEVSL-------NRLEIRRHHSATHLL 558

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG+H++Q GS +  D LRFD +H KP+T  EL+ IE+ VN+ I +  P    I
Sbjct: 559 QAALRNVLGAHIAQAGSSVEADKLRFDFSHPKPVTKEELEKIENFVNEAILKGAPAKIEI 618

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  SGA AL G KY D+VRV+++        S  LCGGTHV +  EI   +IV E
Sbjct: 619 MDIQNAKKSGAIALFGEKYADKVRVLTLG------PSKELCGGTHVENLNEIGSFFIVRE 672

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+  + A        +++  +   LK    + +  ++++ +E + LQ  
Sbjct: 673 SGVSAGVRRIEAVCSKAALELSKEFRKEINDIKDSLK--GADPLLSIKKLKDEIKSLQ-- 728

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
               K   N +DL    + D+N +  ++S+ D  ++KS +D L+ K    ++ L G+ K+
Sbjct: 729 -NDLKNASNTKDLD---VKDINGVKVVVSKFDG-DIKSKIDELKNKFDKVVVFLAGV-KD 782

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S   + +        A +L +  A ++ GGGGGGR   A +GG + +K D+A+    
Sbjct: 783 GKVS---LGSGSKNTSIKAGELVKTVAPIV-GGGGGGRDDFATAGGKDESKIDEALNAAT 838

Query: 894 SFL 896
            F+
Sbjct: 839 KFI 841


>gi|254931439|ref|ZP_05264798.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293582990|gb|EFF95022.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262]
          Length = 879

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 365/927 (39%), Positives = 525/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEQVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|269925210|ref|YP_003321833.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788870|gb|ACZ41011.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 879

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/909 (40%), Positives = 532/909 (58%), Gaps = 53/909 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ FLEFF+  GH ++PSSSL+P  DPTL+FTNSGMV FK++F G+E   Y   TT 
Sbjct: 4   SEIRSKFLEFFEARGHTVVPSSSLVPAKDPTLLFTNSGMVQFKDVFLGRESRSYTRATTA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG + RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L+  R
Sbjct: 64  QKCMRAGGKHNDLENVGPSARHLTFFEMLGNFSFGDYFKREAIGYAWEFVTQVLGLEPSR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ TV+  D+EA  LW++++GL   +IIR+   DNFW MA+ GPCGP SEIF+D+G    
Sbjct: 124 LWATVHYTDDEAASLWQEVAGLPESRIIRMGDEDNFWQMADVGPCGPNSEIFYDRGPEKG 183

Query: 185 GGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   +  R+ E WNLVFMQ+ Q     R  LPK +IDTG+GLER + ++Q   +
Sbjct: 184 CGDPNCTPAHDCGRFWEFWNLVFMQYYQDESGNRTPLPKKNIDTGLGLERTSAIMQGVDS 243

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            ++ DLF  ++   +++ G   E     IV +RVI DH RS +FLIADG+ P NEGR YV
Sbjct: 244 IFETDLFVPIMDEVQRIAGHSDEDRRREIVAYRVIADHSRSLAFLIADGVTPGNEGRSYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + R +G     +      +   MG  Y EL      I++  R+E+E F +
Sbjct: 304 LRRIIRRAIRFGRRIGIEGHFLSDTARVVVDIMGHHYTELEDQWSFIDKVTRAEEEHFSR 363

Query: 361 TLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           TL RG+  LD ++  L   G+ EI  G+ AF+LYDT+G PLD+  ++   RG + +D   
Sbjct: 364 TLARGVAQLDDLIDKLSASGQKEI-PGEDAFRLYDTYGFPLDLTLELARDRGFS-VDTEG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKEDRKVL 476
           F +A+E QR+++RA      S  T K+  +     G  TQF GY  L       ED    
Sbjct: 422 FKRAMERQRAQSRA-----ASTFTAKMPAAYAALSGEPTQFTGYTTL-------ED---- 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +  V AI+++GE+V++   GQ+ E++ D+TPFYAEAGGQ+GDTG   G
Sbjct: 466 ------------TGRVMAIIREGELVDKVEHGQEAEILLDRTPFYAEAGGQVGDTGVITG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 + D Q+   G  +H   V  G +    ++ L +D + R+ +  NH+ATH+LH  
Sbjct: 514 PEGDFHVLDTQRPVNGYILHRGRVLHGSISVGQNVDLVVDARRRQDIMRNHTATHILHKT 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG H  Q GS + PD LRFD TH   ++  E   IE  +ND+   +  V  +    
Sbjct: 574 LRDVLGPHARQAGSLVAPDRLRFDFTHPSQLSDEEFFEIERIINDVSQDDRKVYAQEKPY 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +AIASGA AL G KY D VRVVS+E      + S LCGGTHV  TGEI  +YI SE SI
Sbjct: 634 TEAIASGAMALFGEKYGDIVRVVSIE-----DYGSELCGGTHVHHTGEIGPIYITSEGSI 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIH 774
            +G+RR+EA+TG+ A  +   + E L+ L + LKV    +  +V  + E  R  + Q+  
Sbjct: 689 ASGVRRVEAVTGRGAIKYARERMELLERLGAKLKVPTSEIERQVALLQERLREQERQIEQ 748

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKE-LKSVMDALQKKIQSGIIMLVGIS 831
            +R+L     D     +  V+    ++++  +DS+E +  + D L+ +++S  +++VG  
Sbjct: 749 LRRQLAAGEIDQMLRNVRQVDGTKLLVAQTSLDSREAMSDLADRLRDRLRS-GVVVVGSV 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + K S++ VVT DL+ +   V   +L  ++  L GGGGGGRP  A++GG    K ++A+
Sbjct: 808 LQGKPSIVAVVTPDLVQK--GVHAGKLVKEISALVGGGGGGRPDRAEAGGRFPEKLEEAL 865

Query: 890 AGVASFLKK 898
             V   L +
Sbjct: 866 GSVDEVLAR 874


>gi|331084749|ref|ZP_08333837.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410843|gb|EGG90265.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 879

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 365/910 (40%), Positives = 526/910 (57%), Gaps = 58/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AIQ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +DEEAF++W K  G+ A++I +    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     +   + Y  + +  V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E+++F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKEFIFNVLTQEEDKFD 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + +  +++L+G+ AFKLYDT+G PLD+ ++IL  +G  GID   
Sbjct: 361 KTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419

Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F  A+E+QR +AR      + +G  +   ++I  S+      T+F+GYD L         
Sbjct: 420 FQAAMEKQRVQAREARKETNYMGADATVYDEIDPSV-----TTEFVGYDTLS-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + EI E    GQ+  +  ++TPFYA  GGQ GDTG
Sbjct: 467 ---------------CDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + +  K   G F H   V +G+  T  ++ L +  + R     NHSATHL
Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFGTGDTVTLEVKSKERLNTCKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H   +T  E++++E  VN+ IA+N PVVT 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTREEIEAVEALVNEEIAKNNPVVTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +MN E+A  +GA AL G KY + VRVV++     G  S  LCGGTHVS+TG I    IVS
Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES + AG+RRIEA+TG    ++   Q++KL   A  LK +  N+  ++  +  E + L  
Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746

Query: 771 QLIHAKRK-LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   K K  Q  V D+     +I  V  ++  + +VD   L+ + D L++K+  G++++
Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              +   K S++   TE  L +  +A +L +  A ++ GGGGGGRP+MAQ+GG N    D
Sbjct: 807 ASAAG-GKVSLMATATEGALKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPEGID 864

Query: 887 QAIAGVASFL 896
            A++     L
Sbjct: 865 AALSKAKEVL 874


>gi|229071897|ref|ZP_04205108.1| Alanyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228711193|gb|EEL63157.1| Alanyl-tRNA synthetase [Bacillus cereus F65185]
          Length = 880

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T  + S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVAIESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|323490022|ref|ZP_08095243.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396318|gb|EGA89143.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 874

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 367/922 (39%), Positives = 534/922 (57%), Gaps = 73/922 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+ +  IR  +++FF++ GH+  PS+ L+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKNLKAEDIRQMYIDFFKEKGHDQEPSAPLVPFEDPSLLWINSGVATLKKYFDGRVIPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E 
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKTEAIHWAWEFLTDEK 116

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              FD D  +L +T++ EDEEA+ +W    G+ A++IIR+    NFW + E GP GP SE
Sbjct: 117 WIGFDAD--KLSVTIHPEDEEAYAIWLNEVGVPAERIIRL--EGNFWDIGE-GPSGPNSE 171

Query: 175 IFFDQGECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           IF+D+GE        P   PG   E ERY+EIWNLVF QF         +LPK +IDTGM
Sbjct: 172 IFYDRGESYGNDISDPELYPGG--ENERYLEIWNLVFSQFNHNPDHTYTLLPKQNIDTGM 229

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           GLERMA V Q+   NYD DLF  +I+ +E+++G KY  N  ++   +VI DH+R+ +F I
Sbjct: 230 GLERMACVAQDVPTNYDTDLFIPIIKKTEEISGKKYGENAEMDMAFKVIADHIRTVAFAI 289

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ +A+ LG  +P M  L+P +   M S YPE+   +  
Sbjct: 290 GDGALPSNEGRGYVLRRLLRRAVRFAKKLGVEQPFMYDLVPVVGDVMKSFYPEVNAKQDF 349

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           I   ++ E++RF +TL  GL +L  V+      G++EI  G+ AF+LYDT+G P+++ ++
Sbjct: 350 IIRVMKLEEQRFHETLHDGLTILSSVIEKQKAAGQNEI-PGEDAFRLYDTYGFPVELTEE 408

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462
                G+A +D   F  A++EQR RAR     + S  ++ ++  ++KE   A++FIGY  
Sbjct: 409 YAEEEGMA-VDHKGFETAMQEQRDRARNARQNVNSMQSQSEVLGNIKE---ASEFIGYSQ 464

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                    D  VL                  I++ GE+V+ A  G++VEV+ DQTPFYA
Sbjct: 465 ------TVSDANVLF-----------------IIKDGELVDSAQEGEEVEVILDQTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G    D ++  + +V+K   G  +H   V  G L T+ S+   +D   RR 
Sbjct: 502 ESGGQIADRGTLSNDFVQASVLNVKKAPNGQNLHSVRVNTGEL-TKTSVQAQVDASERRH 560

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL  +LG+HV+Q GS + PD LRFD +H   +T  EL++IE  VN+ 
Sbjct: 561 TVKNHTATHLLHQALKDVLGTHVNQAGSYVGPDRLRFDFSHFGQVTKEELETIEQIVNEK 620

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +   + V T   N ++A   GA AL G KY D VRVV +     G +S  LCGG HV +T
Sbjct: 621 VWDGIAVQTGYYNLQEAKEMGAMALFGEKYGDVVRVVEI-----GGYSLELCGGVHVLNT 675

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI L  IVSE  I AGIRRIEA+TG+ A  +L   +  L++ A  LK S  ++V +V+ 
Sbjct: 676 SEIGLFKIVSEGGIGAGIRRIEAVTGKGAYENLKDSETILENAAGLLKSSPRDMVQKVQT 735

Query: 763 IWEEYRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           +  E + LQ      L          + D +  K+ D+  +S  +   D+ +L+ ++D L
Sbjct: 736 VQAEMKSLQRENESLLAKISNAQSAGILD-AAQKVGDITVLSVKVEAKDNNQLRQLLDDL 794

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           + K+   +I+L G +   K  +   VT+DL    ++A  + +  A+   GG GGGRP MA
Sbjct: 795 KSKMDKAVIVL-GATDGDKVMLAAGVTKDLAGGDYHAGQIVKHVAEQC-GGKGGGRPDMA 852

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +G  + +K D+A+  V S +K
Sbjct: 853 MAGAKDASKLDEALESVYSLVK 874


>gi|299822850|ref|ZP_07054736.1| alanine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816379|gb|EFI83617.1| alanine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 876

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 364/917 (39%), Positives = 536/917 (58%), Gaps = 65/917 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSQEVRQMFLDFFKEKGHTIEPSASLVPANDPTLLWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             ++  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRLSNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIVWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY ED+EA  +WK+  GL+   I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPEKLYVTVYPEDKEAKAIWKEKVGLADAHIVEI--EDNFWDIG-VGPSGPDSEIF 173

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+GE   G  P   E     E ERY+EIWNLVF QF          LPK +IDTGMGLE
Sbjct: 174 YDRGESY-GNDPDDPELYPGGENERYLEIWNLVFSQFNHNPDGSYTPLPKQNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIAD 288
           RM +++Q+   N++ DLF   I+ +E++  ++Y GN+    V  +VI DH+R+ +F I D
Sbjct: 233 RMVSIIQDAPTNFETDLFMPTIKETEKLANVRY-GNSSETDVAFKVIADHIRTVAFAIGD 291

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGYVLRR++RRA+ YA+L+G  EP M  L+P + + M S YPE+ + +  I+
Sbjct: 292 GALPSNEGRGYVLRRLLRRAVRYAKLIGINEPFMYRLVPVVGSIMKSYYPEVSKQESFIQ 351

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE+ERF +TL+ GL +L+ +L  +    +  ++G   FKLYDT+G P+++ ++   
Sbjct: 352 KIIRSEEERFHETLNEGLAILETILKEAKASGEATISGSAIFKLYDTYGFPVELTEEYAE 411

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GLA +D   F   +++QR RAR     + S   + ++  +L E    + FIGY+    
Sbjct: 412 DHGLA-VDHEGFEAEMKQQRERAREARADVKSMQVQGELLATLTE---PSAFIGYEN--- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T   S IV  ++Q   +V+E  +G++ +V+F +TPFYAE+G
Sbjct: 465 -------------------TESRSQIV-YLIQNDTLVDEVKAGEEAQVIFRETPFYAESG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G          + DVQK      +H   VE G+L++   + L +D   R+    
Sbjct: 505 GQIADHGTIQSTSGLAYVKDVQKAPNKQNLHRIFVEEGVLKSGEEVDLRVDTYKRKSTVK 564

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG HV+Q GS + P+ LRFD +H   I+ AEL  +E  VN+ I +
Sbjct: 565 NHTATHLLHRALKNVLGEHVNQAGSLVEPERLRFDFSHFSQISEAELAEMEAAVNEKIWE 624

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PVV   M  ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI
Sbjct: 625 QIPVVIEEMPIDEAKALGAMALFGEKYGDIVRVVQV-----GRYSIELCGGVHVKNTSEI 679

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I+SES I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +V+++  
Sbjct: 680 GLFKIISESGIGAGTRRIEAVTGEAAYRFVTEQETTLKETAAKLKTNSSEAPQKVDQLLA 739

Query: 766 EYRKLQLIHAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSK---ELKSVMDALQKKI 820
           E ++++  +     +L N E  +   +  +VN +  I  +V++K   +L+  +D  + K 
Sbjct: 740 ELKEVKRENDSLLAKLANTESAAIFEQPEEVNGVPVIAKKVNAKDMNQLRQFVDNWKDKQ 799

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879
             G+++L   S+E K +++  V+E    ++ A  L + ++A+V  GG GGG+P MAQ+GG
Sbjct: 800 LEGVLVL-ATSEEGKVNLIAAVSEAYRSKYPAGKLIKEVAARV--GGNGGGKPDMAQAGG 856

Query: 880 PNGNKADQAIAGVASFL 896
            N     +A+A V  ++
Sbjct: 857 KNPEALPEALAFVKEWI 873


>gi|289434784|ref|YP_003464656.1| hypothetical protein lse_1419 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171028|emb|CBH27570.1| alaS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 879

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 361/923 (39%), Positives = 532/923 (57%), Gaps = 72/923 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W++  GL+ + I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDENDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L +  K  ++++ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---STFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  I+Q   +V+E  +G + +++F +TPFY
Sbjct: 464 T----------------------TEYVSEIL-YIIQNDALVDEVAAGSEAQLIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H  +V+ G+L T  ++ L+++   RR
Sbjct: 501 AESGGQVADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVNKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN 
Sbjct: 561 ETVKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNK 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQIAVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      ++E
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTTTKETPQKIE 735

Query: 762 EIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +  + R+++  +     +L      D+  S  +I  VN ++  ++  D  +L+  +D  
Sbjct: 736 LLQADLREVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNW 795

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           + K   GI++L G  +  K +++  V+ED +   ++A  L +  A    GG GGGRP MA
Sbjct: 796 KDKKIGGILVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 853

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N  +   A+  V++++K+
Sbjct: 854 QAGGKNPAELGSALDYVSTWVKE 876


>gi|217964349|ref|YP_002350027.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|217333619|gb|ACK39413.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307571085|emb|CAR84264.1| alaS [Listeria monocytogenes L99]
          Length = 879

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNIHRVSVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|228954673|ref|ZP_04116696.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228805000|gb|EEM51596.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 880

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229048096|ref|ZP_04193669.1| Alanyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228723251|gb|EEL74623.1| Alanyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 880

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K++  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKINPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|89100981|ref|ZP_01173826.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084317|gb|EAR63473.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 366/917 (39%), Positives = 539/917 (58%), Gaps = 72/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FLEFF++ GH + PS+ L+P +DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   SEIRRLFLEFFKEKGHSVEPSAPLVPHDDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT E     D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIDWAWEFLTDERWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +L +T++ EDEEAF +W    G+  ++IIR+    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLSVTIHPEDEEAFSIWTNKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 180 YGDDQNDPELYPGG------ENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGI 290
           MA+V+Q    N+D DLF  +I A E+++G KY  +N  +   +VI DH+R+ +F I DG 
Sbjct: 234 MASVVQNVATNFDTDLFMPIIHAVEKISGSKYGESNEQDTAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+  +   M   YP++ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQININRPFMFELVDVVGEIMADFYPQVTEKAEFIKKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+    +    I+ G   F+LYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNDGLSILSSVIKKEKEKGSNIIPGSDVFRLYDTYGFPVELTEEYAEEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           G+  ID   F   +E QR RAR     +GS    E +   +K +   ++F+GY+ L    
Sbjct: 414 GMK-IDQDGFEAEMEGQRERARTARQDVGSMKVQEGVLGDIKTE---SRFVGYEGLEAK- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S+V  I++ G++ E A +G++V+++ DQTPFYAE+GGQ
Sbjct: 469 ----------------------SVVAVIIKDGQVAEAAGAGEEVQLILDQTPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G   G+G+++ I DVQK   G  +H A+VE GIL TE  +   +D  +R ++  NH
Sbjct: 507 IADNGVLEGEGVKVIIKDVQKAPNGQNLHSAVVESGILETEAGVTAKVDPDSRNKVIKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS + PD LRFD +H   +   EL+ IE+ VN+ I  +L
Sbjct: 567 TATHLLHQALKDVLGTHVNQAGSLVGPDRLRFDFSHFGQVKEDELEKIEEIVNEKIWSSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            VV      ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L
Sbjct: 627 NVVIENKGIDEAKAMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVRNTSAIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SES I AG RRIEA TG+ A   L  Q   L   A+ LK S  +V  RV+ +  E 
Sbjct: 682 FKIISESGIGAGTRRIEAATGEAAYKLLKEQVNILTEAAASLKSSPRDVASRVDALLGEM 741

Query: 768 RKLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           R+LQ  +     +L N+E  S   K  + N ++++ ++V   D   L+++ D L++K+ S
Sbjct: 742 RQLQRENESLSAKLGNIEAGSLVSKAKEENGITYLAAKVQAADMNNLRNMADDLKQKLGS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGP 880
            +++L G   E K +++  VT+D +++ ++A  + + ++A+    GGGGGRP MAQ+GG 
Sbjct: 802 AVVVL-GSVNEGKVNLIAAVTKDYIEKGYHAGKVIKEVAARCG--GGGGGRPDMAQAGGK 858

Query: 881 NGNKADQAIAGVASFLK 897
           +  K + A+  V  ++K
Sbjct: 859 DPEKLESALQFVEEWVK 875


>gi|313608702|gb|EFR84533.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 879

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKSLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRVSVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVEGDKVNLISAVSEEAIKSGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|301335327|ref|ZP_07223571.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|301336313|ref|ZP_07224515.1| alanyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
          Length = 875

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 342/883 (38%), Positives = 505/883 (57%), Gaps = 47/883 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYANRNHTPVTSSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  DKI R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDKIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRASDGTLLALQKKCVDTGAGLERLVSLLAETETV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRHLIAKVENLSGTTYSPTESKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  ++  I+E L +E+E F KT
Sbjct: 302 RKILRRAVNYGKRLGFHRPFLAEVVPSLVETMGEAYPELQASETQIQEVLTTEEEHFFKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       +D+ +F + 
Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDHDYTVDMETFEKL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R ++    S +   I+  L +    ++F+GY +L    F             
Sbjct: 421 EMEAKERSRKNTAKTTSDSN-SIFLDL-DPTNTSEFVGYHMLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ IV+  EI      G++ E++   TPFYAE GGQ+GD+G    +    
Sbjct: 466 ----------IEGIVKYNEIATTLEEGEEGEIILRTTPFYAEKGGQIGDSGEIFCESGTF 515

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+ VHH  + +G L+T M++   ++   R++++ NH+  HLLH AL   L
Sbjct: 516 LVSHTTTPKAGLIVHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALEITL 575

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R     D  +
Sbjct: 576 GEHIRQAGSYVDSKKIRLDFTHNKALSPEDLLAIETIVNEKIRENDPVTIREALYSDVTS 635

Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           S       G KY D VRVVS  +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 636 SSEIKQFFGDKYGDVVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRIEAITG+ A +   GQD  L  +AS ++  +  ++ ++  + EE R+L  Q+   + +
Sbjct: 690 RRIEAITGEDAETLARGQDADLNEIASVIQSPKDQILVKIRNVIEEKRELAKQVADLENQ 749

Query: 779 L-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L Q +V+ L  +C KI +  ++ ++++E + + ++   +AL K+I +  I L    K  +
Sbjct: 750 LVQQHVKSLLPACDKIDETLYLGYLLTEEEGQRIQQYANALHKEIPANFISLWVTEKSGR 809

Query: 836 ASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             VLI V++DL+ R     V L  L A    GG  GG+   AQ
Sbjct: 810 YIVLIRVSDDLIKRGIHAQVLLEELLAPY--GGRCGGKAISAQ 850


>gi|42783517|ref|NP_980764.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|48428502|sp|P61697|SYA_BACC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42739446|gb|AAS43372.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 880

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K+QS ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQSAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|258511993|ref|YP_003185427.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478719|gb|ACV59038.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 879

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 355/910 (39%), Positives = 527/910 (57%), Gaps = 64/910 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F +FF + GH +LPS  L+P +DPTL++ N+GM P K  F G+E P    +   QK
Sbjct: 9   IRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEVPRIVDAQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++ VG T RH TFFEMLGNFSFG YFK  AI  AW+ LT+  +LD  R+ 
Sbjct: 69  CIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVLELDPERIS 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T++++D+EAF++W    GL A +I R    DNFW + E GPCGPCSEIF+D+GE    G
Sbjct: 125 VTIHEDDDEAFEVWHHRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYDRGEAYGCG 182

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P      + +R++EIWNLVF QF +        LPK +IDTG GLER+A++LQ+  NN+
Sbjct: 183 SPDCKPGCDCDRFLEIWNLVFTQFNKNADGSYSPLPKKNIDTGSGLERLASILQDVPNNF 242

Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           + DLF+ +I  + +++G  Y     + V+ ++I DH+R+ +F I DG+LP+NEGRGYV+R
Sbjct: 243 ETDLFRPIINRAAELSGRPYGRSAEDDVHLKIIADHVRTVTFAIGDGVLPSNEGRGYVIR 302

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+   R LG   P +  L+  +   MG  YPE+ + + LIE  +R+E+ERF +TL
Sbjct: 303 RLLRRAVRSGRKLGVERPFLYELVAVVDRIMGDDYPEVREKRSLIERVVRTEEERFLQTL 362

Query: 363 DRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
             G  LL+  +  +    + +L+G+ AF+LYDT+G P+D+  +I   +G+A +D   F +
Sbjct: 363 AAGEELLNRTIEEVKARGETVLSGEAAFRLYDTYGFPIDLTVEIAREKGIA-VDREGFER 421

Query: 421 ALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            LEEQR+RAR A  +  G  +      +  E    ++F+GYD L                
Sbjct: 422 ELEEQRARAREARQVAEGMQSQRGALETFTE---PSRFVGYDEL---------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   V + +  + Q G+ V+    G++ +V+ D TPFYAE+GGQ+GD G  +G   
Sbjct: 463 -------TVDATIIGLFQDGDRVDGLAIGEEGQVILDVTPFYAESGGQVGDRGEIVGANG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++ DVQK   G  V    V  G L    S+   +D   RR +  NH+ATHLLH AL  
Sbjct: 516 KAEVLDVQKAPHGQHVMRVRVVDGSLLQGDSVRAHVDEDFRRDIVKNHTATHLLHKALRD 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD +H  P+T  EL  +E  VND I ++  V  R M+ ++A
Sbjct: 576 VLGTHVAQAGSLVEPERLRFDFSHFGPLTDEELAEVERRVNDEIWRDHAVHIREMDLDEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA AL G KY  RVRVV          S  LCGG HV  T  I    I SE+ I +G
Sbjct: 636 KAMGAMALFGEKYGQRVRVVQAG------ESIELCGGCHVPRTSVIGQFLITSETGIASG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---------KL 770
            RRIEA+TG+ A      ++E+L+ +A  LK +   VV R + + +E R         K 
Sbjct: 690 TRRIEAVTGRYAYRVAREREERLRQVADALKTNVSTVVERAQRVVQEMRELERELESAKA 749

Query: 771 QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +L HA+  +L  NVE      +A V  +   +S++D   L+ ++D ++ ++ S +++++G
Sbjct: 750 RLAHARVDELVANVE-----TVAGVPVIRAALSDLDMDGLRQLVDEIKARVDS-VVVVLG 803

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +   K   +  V++D   R  +A ++ +  A V  GGGGGGRP +AQ+GG +  K  +A
Sbjct: 804 SAHRGKVQFVAYVSKDWQSRGLHAGEIVKQVAAVT-GGGGGGRPDLAQAGGRDAAKLAEA 862

Query: 889 IAGVASFLKK 898
           I  V   L++
Sbjct: 863 IQKVGEILEQ 872


>gi|152976803|ref|YP_001376320.1| alanyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|205829984|sp|A7GT67|SYA_BACCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152025555|gb|ABS23325.1| alanyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 880

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 537/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFKEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWHEKIGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E ERY+E+WNLVF QF          LPK +IDTGMGLERM +++
Sbjct: 180 Y-GNDPSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSIV 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPAN 294
           Q    N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG LP+N
Sbjct: 239 QNVPTNFDTDLFMPMIGATESISGEKYRSGDAEKDMAFKVIADHIRTVTFAVGDGALPSN 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I + +++E
Sbjct: 299 EGRGYVLRRLLRRAVRYAKKLNMNRPFMYELVPVVGEVMKDFYPEVLEKKDFIAKVVKNE 358

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+  
Sbjct: 359 EERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPVELTEEYAEEAGMT- 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   +E+QR RARA    + S   +     L E   A++F+GY            
Sbjct: 418 VDHAGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG----------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                       T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D+G
Sbjct: 465 ------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADSG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + DG+++ + DVQK   G  +H  +VE G+L  + ++   ID +NR  +  NH+ATHL
Sbjct: 513 YLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGVLTKDATVKAVIDTKNRSSIVKNHTATHL 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V   
Sbjct: 573 LHQALKDVLGTHVNQAGSLVTAERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEIS 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV+
Sbjct: 633 QKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIVA 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ 
Sbjct: 688 ESGIGAGTRRIEAVTGKAAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ- 746

Query: 773 IHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                 L   + ++    + D       +N ++  ++  D   L+++MD L+ K++S +I
Sbjct: 747 -KENESLAAKLSNIEAGNLTDAVVSVDGINVLATKVNVADMNNLRTMMDDLKNKLESAVI 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLAAVN-DDKVNILAGVTKDLVGQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            D+A+A V  ++K
Sbjct: 864 VDEALAFVQEYVK 876


>gi|229019610|ref|ZP_04176423.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229025848|ref|ZP_04182246.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735459|gb|EEL86056.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741690|gb|EEL91877.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 880

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GGYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  +S + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVS-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|324328292|gb|ADY23552.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 880

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTAVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K+QS ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQSAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|47093426|ref|ZP_00231191.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|226224105|ref|YP_002758212.1| alanyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824437|ref|ZP_05229438.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852128|ref|ZP_05241476.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|300764830|ref|ZP_07074820.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|47018205|gb|EAL08973.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|225876567|emb|CAS05276.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605431|gb|EEW18039.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293593673|gb|EFG01434.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514506|gb|EFK41563.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|328465542|gb|EGF36771.1| alanyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 879

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|30022464|ref|NP_834095.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|206969900|ref|ZP_03230854.1| alanyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|229081653|ref|ZP_04214148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229111861|ref|ZP_04241407.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129669|ref|ZP_04258637.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229180664|ref|ZP_04308004.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|296504879|ref|YP_003666579.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|33301672|sp|Q817Z0|SYA_BACCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29898022|gb|AAP11296.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|206735588|gb|EDZ52756.1| alanyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228602809|gb|EEK60290.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228653786|gb|EEL09656.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671617|gb|EEL26915.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701657|gb|EEL54148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|296325931|gb|ADH08859.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 880

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229192600|ref|ZP_04319561.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228590907|gb|EEK48765.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 880

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVAAESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|86608988|ref|YP_477750.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123751690|sp|Q2JLC4|SYA_SYNJB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86557530|gb|ABD02487.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 884

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 356/907 (39%), Positives = 525/907 (57%), Gaps = 66/907 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR TFL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P Y  VTT 
Sbjct: 8   AAIRQTFLDFYAQRGHQVLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRDPEYPRVTTA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F L   R
Sbjct: 67  QKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTEVFGLPPER 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ EDEEAF LW+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 123 LVVSVFREDEEAFALWRDEIGIPAHRIQRMGEADNFWAAGPTGPCGPCSEIYYDFKPEL- 181

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R++EI+NLVFM+  + ++     L K +IDTG+GLER+A VLQ   NNY
Sbjct: 182 GDERIDLEDDSRFLEIYNLVFMELNRDSEGHLMPLAKQNIDTGLGLERLAQVLQGVPNNY 241

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQ +  + G+ Y   N    ++ +VI DH R+   LIADG+LP+N  RGYVL
Sbjct: 242 ETDLIFPIIQTAAGIAGLNYSKANPEQQISLKVIGDHARAVMHLIADGVLPSNVDRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG  EP  + ++        +AYP++ + + LI+  L+ E+E+F KT
Sbjct: 302 RRLIRRMVRHGRLLGIGEPFTIPVIETAIQLAEAAYPQVRERETLIKTELQREEEQFLKT 361

Query: 362 LDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           L+RG  LL  + + +          + ++G  AFKL+DT+G PL++ Q+I    G + +D
Sbjct: 362 LERGERLLLDLFTAVESSRRDSSSPKQISGADAFKLFDTYGFPLELTQEIAQEHGFS-VD 420

Query: 415 IISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +  F Q +E+QR RARA   ++ L   T +     L +    T+F+GY            
Sbjct: 421 LEGFEQEMEKQRQRARAAHQTIDL---TAQGSLDELADFLSQTEFLGYS----------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +    +V+A++ +G+ V +  +GQ V+VV D+TPFYAEAGGQ+GD G
Sbjct: 467 ------------QSSARGVVEALLVEGKSVPQVEAGQAVQVVLDRTPFYAEAGGQIGDRG 514

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GDG+ ++I DVQK+ + +FVH   VERGILR    +   ID   RR+   +H+ATHL
Sbjct: 515 YLSGDGLLVRIEDVQKQGD-LFVHFGRVERGILRVGDPVQAQIDLACRRRAQAHHTATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  I+   + Q GS +  D LRFD T S+P+T  EL+ IE+ VN  IA+       
Sbjct: 574 LQAALKRIVDPSIGQAGSLVAFDRLRFDFTLSRPVTPEELEQIENLVNTWIAEAHAAQVA 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM   +A A GA A+ G KY   VRV+       GV S  LCGGTHV++T EI L  I++
Sbjct: 634 IMPLAEAKARGAVAMFGEKYGAEVRVIDFP----GV-SMELCGGTHVNNTAEIGLFKIIA 688

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           E+ + AGIRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q 
Sbjct: 689 ETGVAAGIRRIEAVAGPAVLEYLNERDRVVRELSAQFKAKPQELPERVAALQAELKAAQK 748

Query: 772 -LIHAKRKLQ-LNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            L   + +L  L  E L      +AD+  +   +     + LK+  + L  K+  G ++L
Sbjct: 749 ELEEVRSQLALLQAEGLLAQAVAVADLKVLVAELGSTTPEALKTAAEHLLHKLGEGAVVL 808

Query: 828 VGISKEKKASVLIVVTEDL----LDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             + +  K S++   +  +    L   + + ++A+L+         GGRP++AQ+GG   
Sbjct: 809 GSVPEAGKVSLVAAFSPAVQQLGLKAGSFIGEIAKLTGGGG-----GGRPNLAQAGGKQP 863

Query: 883 NKADQAI 889
            K  +A+
Sbjct: 864 EKLAEAL 870


>gi|47566576|ref|ZP_00237398.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47556606|gb|EAL14938.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 880

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ E K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVNDE-KVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|313623696|gb|EFR93847.1| alanyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 879

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/924 (39%), Positives = 530/924 (57%), Gaps = 74/924 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +D+G      E  P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGL
Sbjct: 174 YDRGPAFGDDESDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGL 231

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ERM +++Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I D
Sbjct: 232 ERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGD 291

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I+
Sbjct: 292 GALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQADFIQ 351

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +TL+ GL +L+ +L +  +  ++ + G   FKLYDT G P+++ ++   
Sbjct: 352 KVIRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAE 411

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GL  +D   F   ++EQR RAR+    + S   + ++  +L +K   ++F+GY+    
Sbjct: 412 DHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTDK---SEFVGYNT--- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  VS I+  ++Q   +V+E  SG + +V+F +TPFYAE+G
Sbjct: 465 -------------------TEHVSEIL-YLIQDDTLVDEVASGSEAQVIFKETPFYAESG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   
Sbjct: 505 GQVADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIK 564

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I +
Sbjct: 565 NHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE 624

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I
Sbjct: 625 QINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADI 679

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  
Sbjct: 680 GLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQA 739

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDA 815
           + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+  +D 
Sbjct: 740 DLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDN 794

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
            + K   G+++L G  +  K +++  V+ED +   ++A  L +  A    GG GGGRP M
Sbjct: 795 WKDKKIGGVLVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDM 852

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ+GG N  +   A+  V++++K+
Sbjct: 853 AQAGGKNPAELGTALDYVSTWVKE 876


>gi|229146959|ref|ZP_04275323.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228636558|gb|EEK93024.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
          Length = 880

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLITQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|212638588|ref|YP_002315108.1| alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212560068|gb|ACJ33123.1| Alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 877

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 371/916 (40%), Positives = 536/916 (58%), Gaps = 70/916 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRQMFLDFFKEKGHAVEPSASLIPIDDPSLLWINSGVATLKKYFDGRVIPDNPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +T++ EDEEAF +W    GL  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 NRLSVTIHPEDEEAFDIWHNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEQ 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   N+D DLF  +I+A+EQ++G  Y  +    V  +VI DH+R+ +F I DG LP+NE
Sbjct: 239 QDVPTNFDTDLFMPIIRATEQISGETYRTDAEKDVAFKVIADHIRTVTFAIGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I++ +++E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKQLNIQRPFMYELVPVVGEIMVDYYPEVKEKASFIQKVIKNEE 358

Query: 356 ERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL-- 410
           ERF +TL+ GL +L  V+      G D I   DV F+LYDT+G P+++ ++     G+  
Sbjct: 359 ERFHETLNEGLAILASVIEKEKQRGSDTISGEDV-FRLYDTYGFPVELTEEYAEEEGMKV 417

Query: 411 --AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
             AG +     Q    + +R    S+ +  G    I      K  +T F+GYD L     
Sbjct: 418 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDI------KVEST-FVGYDQL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              +SS+V+ IV+ G++V E   GQ+ +V+  +TPFYAE+GGQ+
Sbjct: 466 ------------------SISSVVEVIVKDGQLVNEVSEGQEAQVILRETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G+  +  + DVQK   G  +HH +VE+G+++T  + +  +D   R  +  NH+
Sbjct: 508 ADRGWIEGETGKAYVKDVQKAPNGQHLHHIVVEQGVIQTNGTYIAHVDEAARVDIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +NL 
Sbjct: 568 ATHLLHQALKDVLGVHVNQAGSLVAPDRLRFDFTHFGQVKQEELEQIEAIVNEQIWRNLS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VAIEYKPLDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   LK +A  LK +  +V+ R++ +  + R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYRLMNDQIALLKEVAEKLKTNPKDVLTRIDTLMNDMR 742

Query: 769 KLQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           +LQ  +   A R   +  E+L  +++ +VN +  + S+V   D   L++++D L++K+ S
Sbjct: 743 ELQRENESLAARLSHMEAENL-VNQVKEVNGVPLVTSKVNNADMNSLRAMVDDLKQKLGS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            II+L  + ++ K +++  VT DL+DR ++A  L +  A    GGGGGGR  MAQ+GG +
Sbjct: 802 AIIVLASV-QQNKVNLIAGVTNDLIDRGYHAGKLIKEVATRC-GGGGGGRADMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK D+A+  V  ++K
Sbjct: 860 ANKVDEALKFVEQWVK 875


>gi|290893863|ref|ZP_06556841.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|290556580|gb|EFD90116.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 879

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKMLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|228960660|ref|ZP_04122305.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799024|gb|EEM45996.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 880

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|317133026|ref|YP_004092340.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471005|gb|ADU27609.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 874

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/905 (39%), Positives = 525/905 (58%), Gaps = 47/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  LPS  L+P  D +L+  NSGM P K  F GQ  P  + V
Sbjct: 4   TGLNELREKYLAFFESKGHLRLPSFPLVPQGDNSLLLINSGMAPMKKYFLGQVTPPSKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR      D+++VG+ +RH T+FEMLGNFSFG YFK  A    W+ +TK   L 
Sbjct: 64  TTCQKCVRT----PDIEHVGKDDRHGTYFEMLGNFSFGDYFKHEACAWGWEFVTKVVKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++Y+T+Y +D+EAF +W K  G+    I+R+   DNFW    +GPCGPCSEI+FD+GE
Sbjct: 120 EDKVYVTIYLDDDEAFDIWTKEVGVDPSHIVRLGKEDNFWEHG-SGPCGPCSEIYFDRGE 178

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WN+VF Q++   K     + K +IDTGMGLER+A V+Q+
Sbjct: 179 EHGCGKPTCGVGCDCDRYVEFWNIVFSQYDSDGKGTYTPMAKPNIDTGMGLERLACVMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  +++++ + ++ G+ Y  +    ++ RVI DH+RS+ FL+ DG+LP+NEGR
Sbjct: 239 VNNLFEVDTVQNIMKHTGRIAGVTYGEDAKADISLRVITDHIRSTVFLVGDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG  EP +  +   +  E  +AYP+L++ +  I+  +++E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGIREPFLYQVAETVVHENAAAYPDLVEKQSYIQSVIKAEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  T+D+GL LL+  ++ L    +L+GD AFKLYDT G PLD+  DIL  RG + +D   
Sbjct: 359 FAATIDQGLQLLEQRIAALPAGGVLSGDDAFKLYDTFGFPLDLTSDILEERGFS-VDADG 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++EQR+RARA          E    S  E    T+F+GY+            K+ C
Sbjct: 418 FEKRMKEQRARARAARAAGMGAAWED---SKDEDTPETRFVGYE------------KLSC 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V AI+ +GE V  A  G  V VV D TPFYAE+GGQ+GDTG     
Sbjct: 463 -----------AAKVAAIITEGERVGLADQGSTVSVVLDTTPFYAESGGQVGDTGLLTAA 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ +Q+TD +K   G F+H   V  G L    ++   +D   RR +  NHSA HLL  AL
Sbjct: 512 GVCVQVTDCRKSPTGRFLHIGKVVEGSLSAGETMQAQVDAPRRRAVMRNHSAAHLLQAAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            ++LG+HV Q G  +    +RFD TH   +T+ EL ++E  VN  I   LPVVTR M  E
Sbjct: 572 RSVLGTHVQQAGQLVNDRHVRFDFTHFAALTADELAAVEKEVNTAILSALPVVTRTMAVE 631

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL   KY D VRVV +     G  S  LCGGTHV +TG+I L  IVSE+S+ 
Sbjct: 632 EAKKTGAMALFSEKYGDVVRVVQM-----GDVSKELCGGTHVDNTGKIGLFRIVSETSVS 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIHAK 776
           AG+RRIEA+TG      L GQD  +K  A  LK +   +  R  ++  E R K ++I   
Sbjct: 687 AGVRRIEAVTGTNVLELLRGQDIAIKEAAQVLKAAPAELPQRAAQVAGELREKDRVIETL 746

Query: 777 R----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           R     +Q++    +  ++     ++  + E+D   L+ + D +++     +I+L G++ 
Sbjct: 747 RGRIAAMQMDALLAAAKEVGVFRLITASLKEMDVDGLRMITDRVRESDPQAVIVLAGMAG 806

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K         E + +  +A +L R +AK+  GGGGGGRP  A +GG + ++  +A+  V
Sbjct: 807 GKVVFAAACGKEAVKNGAHAGNLLRTAAKIT-GGGGGGRPDSATAGGRDASRVAEALQSV 865

Query: 893 ASFLK 897
            + L+
Sbjct: 866 EAGLE 870


>gi|152991942|ref|YP_001357663.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|205830233|sp|A6Q747|SYA_SULNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151423803|dbj|BAF71306.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 857

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 361/905 (39%), Positives = 532/905 (58%), Gaps = 73/905 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTVQ 65
           IR TFL++FQ  GH+L+PSS L+P +DPTLMFTN+GMV FKNIFTG+   P     T+ Q
Sbjct: 3   IRKTFLDYFQSKGHKLVPSSPLVP-DDPTLMFTNAGMVQFKNIFTGEAPIPNPPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQR 123
            C+RAGGKHNDLDNVG T RHHT FEMLGNFSF  YFKE AI  AW+ +T E   DL   
Sbjct: 62  TCLRAGGKHNDLDNVGYTARHHTLFEMLGNFSFADYFKEDAIAYAWEFVTDEKYLDLPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG--- 180
           ++++TV+D D+EA+ +WKK   +S D+I+R    DNFW M +TGPCGPCSEIF+DQG   
Sbjct: 122 KIWVTVHDSDDEAYDIWKKY--ISEDRIMRFGDKDNFWQMGDTGPCGPCSEIFYDQGAEH 179

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               E + GG      EG+R++EIWNLVFMQ+E+  K     LPK SIDTGMGLER+  +
Sbjct: 180 FHSEEDVMGG------EGDRFLEIWNLVFMQYERDEKGTLNPLPKPSIDTGMGLERVVAI 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +   NNY   LF   ++   ++ G  Y+    N  ++RVI DHLRS SFL+A G+    
Sbjct: 234 KEGVFNNYHSSLFMPFLEKIGELVGKPYDFDAPNSASYRVIADHLRSVSFLLAQGVNFDK 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRIMRRA+ +  LLG  EP M  L+  L   MG  Y  L      I+ +++ E
Sbjct: 294 EGRGYVLRRIMRRAIRHGYLLGLREPFMYKLVDTLVDLMGKQYDYLASRAEAIKTSMKME 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +T++ G+ L +  L +    ++ NG+VAFKLYDT G PLD+ +D+L  + +  +D
Sbjct: 354 EERFFETIEAGIKLFNEELKNT--QDVFNGEVAFKLYDTFGFPLDLTEDMLREKNIR-LD 410

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ +E Q+++++A+  G G   T   +  LKE++   +F+GY+             
Sbjct: 411 IDAFNKKMEAQKAQSKANWKGTGDAATTGDFKLLKEEFNTNEFVGYE------------- 457

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC- 533
                     T  V++ V A++ +     +A++G K  V+ ++TPFYAE+GGQ+GD G  
Sbjct: 458 ----------TQEVTTKVLALLDENFKKTDAING-KGWVLLEKTPFYAESGGQVGDKGKL 506

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATH 591
               + + +++ D +K     F+   + E  G L     +   +D  +R ++  +HSATH
Sbjct: 507 EIRNEKLEIRVLDTKK-----FLDMNLSEVEGKLSVGDEVKAVVD-PSRVEIEKHHSATH 560

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  ILG H++Q GS      LRFD +H K +T+ E++ +E  VND I++ +P  T
Sbjct: 561 LLHAGLRAILGDHIAQAGSLNDDKRLRFDFSHPKAMTAEEIEKVEAWVNDKISRAIPRKT 620

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ ++A  +GA AL G KY + VRVVS+     G  S  LCGGTHV +T +I L  I 
Sbjct: 621 EIMSVDEAKKAGAMALFGEKYGNEVRVVSM-----GDASIELCGGTHVDNTAQIGLFMIT 675

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES + AG+RRIEAI G+ A   +    E+L  +    +V   N +  + ++ E+ + L+
Sbjct: 676 KESGVSAGVRRIEAICGRAAVEKVKALREELSQIKE--EVKNQNPIAGIAKLKEQIKTLK 733

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                  +  + ++LS   +     ++ I+ EV + ++KS++D ++ K  +  +ML    
Sbjct: 734 -SEVASAMSASQKELSTVNVNG---VNVIVEEVQTGDIKSMIDDVKNKYDNVAVMLF--- 786

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            +KK   +++          A D  +  A ++ GGGGGGRP  AQ+GG + ++   A+  
Sbjct: 787 -QKKGDKVLLAAGSKNTPIKAGDWIKAIAPIV-GGGGGGRPDFAQAGGKDASRITTALEE 844

Query: 892 VASFL 896
              +L
Sbjct: 845 AKVYL 849


>gi|218231748|ref|YP_002369198.1| alanyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218159705|gb|ACK59697.1| alanine--tRNA ligase [Bacillus cereus B4264]
          Length = 880

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|301055897|ref|YP_003794108.1| alanyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378066|gb|ADK06970.1| alanyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 880

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G+L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGMLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229158004|ref|ZP_04286075.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625457|gb|EEK82213.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 880

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|225181972|ref|ZP_03735405.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167334|gb|EEG76152.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 872

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 365/902 (40%), Positives = 524/902 (58%), Gaps = 50/902 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+TFLEFF+   H +LPS SLIP NDPTL+   +GM P K  FTG++ P    V T QK
Sbjct: 6   IRSTFLEFFKGKEHLVLPSFSLIPQNDPTLLMVGAGMAPLKPYFTGEKTPPKPRVATCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR      D++ VGRT+RH TFFEMLGNFSFG YFKE AI  AW+L+T  + L + +LY
Sbjct: 66  CVRT----PDIERVGRTSRHATFFEMLGNFSFGDYFKEEAILWAWELVTTGYKLPEDKLY 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY +D+EA+ +W K  G++ ++I R+   DNFW + + GPCGPCSEI++D G     G
Sbjct: 122 VSVYLDDDEAYDIWHKKVGIAPERIFRLGKEDNFWEIGQ-GPCGPCSEIYYDLGADRGCG 180

Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            P + E G   +R++E+WNLVF QF      E   L + +IDTG GLER+A VLQ   N 
Sbjct: 181 RP-NCEVGCDCDRFLEVWNLVFTQFNCTESGEYVPLTQKNIDTGAGLERLAVVLQGVNNL 239

Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ID  + L+    +VT  +Y  +     + R+I +HLR  SF++ DGILP NEGRGYVL
Sbjct: 240 FEIDTVRPLLDHFSKVTKTEYGKDQEKDTSLRIITEHLRGISFMVGDGILPGNEGRGYVL 299

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA+ + ++LG  EP + + +  +  E G  YPEL + +  I++ +R E+ERF +T
Sbjct: 300 RRLLRRAVRHGKILGVGEPFLHNAVNLVVDEYGEFYPELAKGREYIQKVVRLEEERFHET 359

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L++G+ +LD ++   G   +L GD AFKLYDT+G P+D+ ++IL    L  +D   + +A
Sbjct: 360 LEQGMKILDELMHKAGPRGVLPGDAAFKLYDTYGFPIDLTKEILAENKLI-LDEEGYQEA 418

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           LE QR RAR+       G  +  + SL++    T+F GYD L                  
Sbjct: 419 LEAQRERARSARGASVFGKDDTDYESLRQL--TTEFTGYDSLE----------------- 459

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     V AI++ G+       G + EVV   TPFY E GGQ GDTG  I DG  +
Sbjct: 460 ------AEGEVLAILKDGQPASAVSEGDEAEVVLSVTPFYGERGGQAGDTGIIITDGGTM 513

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++TD         +H   +++G +    +    +    R  +  NH+ATHL+H AL  +L
Sbjct: 514 EVTDTVMTPFEQVIHRGSIKQGTVSVGDAAKGKVFAPGRSSICRNHTATHLIHTALQEVL 573

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS +TPD LRFD T+    T  +L  +E  VN+ I  N PV   + + ++A  
Sbjct: 574 GEHVKQAGSLVTPDRLRFDFTNLSAATPEQLAEVEQKVNEKIWANEPVSVTLASLDEAKD 633

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY D VR+V V     G +S  LCGGTHV S GEI LL IVSE+ I AG+R
Sbjct: 634 MGATALFDEKYGDAVRIVRV-----GDYSMELCGGTHVQSAGEIGLLKIVSEAGIGAGMR 688

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG  A      +++ L+  A+ LK S   +  R+  +  E++ LQ  + + +L+L
Sbjct: 689 RIEALTGAAAYRWFAQRNQLLEQCAAQLKSSPEQLPERISGLQAEFKDLQREYQRLQLKL 748

Query: 782 ---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
               V+ L     + + V  +S  +S  + + L+ + D L+ K+ SGII+L G + E K 
Sbjct: 749 AGMEVDGLLSEVSQKSGVPVLSARVSAGNMETLREMADRLKNKLGSGIIIL-GAAAEGKV 807

Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            ++  VT DL+   ++A  L    AK L GGGGGGRP MAQ+GG + +K + A+  V S 
Sbjct: 808 LLVGAVTNDLVKAGYHAGKLVGEVAK-LTGGGGGGRPDMAQAGGKDPDKLESALEKVDSL 866

Query: 896 LK 897
           ++
Sbjct: 867 VE 868


>gi|255284141|ref|ZP_05348696.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255265315|gb|EET58520.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 879

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 365/911 (40%), Positives = 523/911 (57%), Gaps = 58/911 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+FFQ  GH  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   VNELRKMFLDFFQSKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFDIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RYIE+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYIEVWNNVFTQFENDGNGNYTELQQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  + L     +    +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTIEALRNKVCEFAHTEYKTDEKKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG +   +  L   +       YPEL + K  I + L  E+++F 
Sbjct: 301 VLRRLIRRAARHGRLLGISGKFLSELSATVIEGSKDGYPELEEKKDFIFKVLTQEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L G+ S +  + +  L G  AF LYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLSILSGMESKMEAEGVKTLAGRDAFTLYDTYGFPLDLTKEILEEKGYT-IDEEG 419

Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F  A+EEQR++AR      + +G  +   ++I  S+      T+F+GYD L         
Sbjct: 420 FKAAMEEQRTKARNAREVTNYMGADATVYDEIDPSV-----TTEFVGYDKLE-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S +  +  + EI E    G+   +  +QTPFYA  GGQ GDTG
Sbjct: 467 ---------------YTSKITVLTTEKEITEAVSDGENATIFVEQTPFYATMGGQEGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H   V +G+ +    + L++  + R     NHSATHL
Sbjct: 512 VIRTADAEFEVEDTIKLLGGKVGHVGRVTKGMFKVGDEVTLSVSPKKRADTCKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LG+HV Q GS +TPD LRFD  H  P+T+ E+   E  VN+ IA +LPVVT+
Sbjct: 572 LQKALKTVLGAHVEQKGSLVTPDRLRFDFAHFAPMTAEEIAKTEALVNEQIAASLPVVTQ 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN E+A  +GA AL G KY D VRVVS+     G  S  LCGGTHVS+TG I    IVS
Sbjct: 632 IMNIEEAKKTGAMALFGEKYADDVRVVSM-----GDFSKELCGGTHVSNTGMITTFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG    ++    +++L   A  +K +   ++ R+  + EE +  Q 
Sbjct: 687 ESGIAAGVRRIEALTGDGVFAYYHNLEQQLAEAAKAVKATPATLLDRLHHLTEELKAAQS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L  + L     +  ++  V  ++  +  VD   L+ + D L++K+  G+I+L
Sbjct: 747 EVESLKSRLAKDALGDVMDNVKEVKGVKLLAAKLEGVDMNGLRDLGDQLKEKLGDGVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++ + K S+L + T+    +  +A +L +  A ++ GGGGGGRP+MAQ+GG N    +
Sbjct: 807 ASVN-DGKVSLLSMATDGAQKQGAHAGNLIKGIAALV-GGGGGGRPNMAQAGGKNPAGVE 864

Query: 887 QAIAGVASFLK 897
            A+A  A  L+
Sbjct: 865 DALAKAAEVLE 875


>gi|229824851|ref|ZP_04450920.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC
           49176]
 gi|229790854|gb|EEP26968.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC
           49176]
          Length = 888

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 360/913 (39%), Positives = 526/913 (57%), Gaps = 52/913 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+K GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + V T
Sbjct: 6   VNELRRMFLEFFEKKGHLKMNSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPSKRVCT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG+T RH TFFEMLGNFSFG YFKE AI  AW+ LT+   +   
Sbjct: 66  CQKCIRTG----DIDNVGKTARHGTFFEMLGNFSFGDYFKEEAIPWAWEFLTETVGIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D EAF++W K   +SA++I +    DNFW    +GPCGPC+EI+FD+GE  
Sbjct: 122 RLYPSVYVDDNEAFEIWNKKMNISAERIFKFGKEDNFWEHG-SGPCGPCTEIYFDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN+VF QF+   K     L + +IDTGMGLER+A  +Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNVVFSQFDNDGKGNYSDLEQKNIDTGMGLERLAVAVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   KY+ N  N ++ RVI DH+RS++F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTLLALRNKVCEIADKKYKDNEKNDISIRVITDHIRSATFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  + +LLG     ++ L  A+       YPEL + +  I   +  E+E+F 
Sbjct: 301 VLRRIIRRADRHGKLLGIDGAFLVGLAKAVIAGSKDGYPELAEKQDFILNVIEQEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+++GL +L+G+   +    +  ++G+ AFKLYDT+G P+D+ ++IL  +G+  ID  +
Sbjct: 361 KTINQGLEILEGIQKDMEAKGVKTMSGEDAFKLYDTYGFPIDLTKEILEEKGM-DIDEEA 419

Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F QA++ Q+  AR        +G  +   E+I  ++      ++FIGYD           
Sbjct: 420 FKQAMKVQKDTARNARKTTSYMGADATIYEQIDPAIN-----SEFIGYD----------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            K   +   + L   VS   +   ++  I E    G    V+ D TPFYA  GGQLGD G
Sbjct: 464 -KTEAEGKIVAL---VSVGSEEDGEESAISEALTDGMTGAVITDVTPFYATKGGQLGDIG 519

Query: 533 C-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
              +GD +  ++ D    A     H   V +G+ +    + L +D +NR     NHSATH
Sbjct: 520 VITVGDAV-FEVKDTIPVAGSKIAHIGKVIKGMFKIGDKVTLKVDAENRMATCRNHSATH 578

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q+GS       RFD +H K +T  E+K++E  VN+ IA+++PV T
Sbjct: 579 LLQKALREVLGTHVEQSGSYQDAGRTRFDFSHFKAMTPEEIKAVEKLVNEKIAESIPVDT 638

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M+ E+A  SGA AL G KY D VRVV +     G  S   CGGTHV +TG I    I+
Sbjct: 639 KVMSIEEAKKSGAMALFGEKYGDEVRVVGM-----GDFSKEFCGGTHVKNTGMIGQFKII 693

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AGIRRIEAITG     +    +  +   A  LK S   +V + + + EE + LQ
Sbjct: 694 SESGVAAGIRRIEAITGNNVIKYYENLENTIAEAAKMLKASPDKLVEKAKHLMEELKSLQ 753

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K +   E L        +I  V  ++  I + D  EL+++ D L+ K+  G+I 
Sbjct: 754 SENESLKNKAAKEALGDVMDKVVEIGGVKVLAVDIPDTDGNELRNLGDELKNKLGEGLIF 813

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   +K+ K +++ + T+  +    +A +L +  A ++ GGGGGGRP+MAQ+GG    K 
Sbjct: 814 LAS-AKDGKVNLVAMATDGAVKAGVHAGNLIKTVAPIV-GGGGGGRPNMAQAGGKFSEKK 871

Query: 886 DQAIAGVASFLKK 898
             A+  VA  +KK
Sbjct: 872 ADAVKAVADEVKK 884


>gi|317471795|ref|ZP_07931133.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900721|gb|EFV22697.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 879

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/913 (38%), Positives = 518/913 (56%), Gaps = 76/913 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+FF+   H ++ S SL+P ND +L+  N+GM P K  FTGQE P    V T
Sbjct: 6   VNELRKMFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPKTRVAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+E+WN VF QFE         L   +IDTGMGLER+A V+QE  
Sbjct: 181 GCGSPDCTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVVVQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K +     ++ G+ Y  +  N ++ RVI DH+RS+SF+I+DG++P+NEGRGY
Sbjct: 241 SIFDVDTIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG  E  +  L   +  E    YPEL + +  I + L +E+E+F 
Sbjct: 301 VLRRLIRRAARHGRMLGMKELFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTEEEQFN 360

Query: 360 KTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +L   +  +S  GK E L G  AFKLYDT+G PLD+ ++IL  +G++ +D  
Sbjct: 361 RTIDQGLQILADMEEAMSREGKKE-LAGKDAFKLYDTYGFPLDLTKEILEEKGIS-VDET 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F +A+E+QR +AR           +   +   +    ++F+GYD L             
Sbjct: 419 GFQKAMEQQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL------------T 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           C+           S + A+     + +  V GQ+  ++  +TPFYA +GGQ  D G  + 
Sbjct: 467 CE-----------SEIIAMTTDKNLTDSLVEGQRGTIICSRTPFYATSGGQEADQGVILS 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +     + DV K + G F H   V  G L     ++L ++ +NRRQ   NHSATHLL  A
Sbjct: 516 ENSSFAVEDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHLLQKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L T+LGSHV Q GS      LRFD TH  P+TS E+K +ED VN+ IA N PV T++M+ 
Sbjct: 576 LRTVLGSHVEQAGSSNNAKHLRFDFTHFSPMTSEEIKKVEDIVNEEIAANRPVETKLMSM 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A  +GA AL G KY D VRVVS+     G  S  LCGGTHV++TG I +  I+SE+ +
Sbjct: 636 DEAKNTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITVFKILSETGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEAIT +    +    +E+L   A  +K +   ++ R+E +  E ++L   +  
Sbjct: 691 AAGVRRIEAITDKAVFEYYEKMEEELMEAAKVVKSTPAKLMARLEALMTELKELHSENES 750

Query: 777 RKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  + L     ++ DVN    ++  +++VD   L+ + D+L++K+  G+I+L    
Sbjct: 751 LKSKLAKDALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVLAS-- 808

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--------------GRPHMAQS 877
                         L  +   V +A   A+  G   G               GRP+MAQ+
Sbjct: 809 -------------SLGGKVFLVAMATDGAQKAGAHAGNLIKGIAGCVGGGGGGRPNMAQA 855

Query: 878 GGPNGNKADQAIA 890
           GG      D AIA
Sbjct: 856 GGKKPEGIDDAIA 868


>gi|303233900|ref|ZP_07320549.1| alanine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302494825|gb|EFL54582.1| alanine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 873

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 344/907 (37%), Positives = 525/907 (57%), Gaps = 73/907 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K      T+
Sbjct: 6   LNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E ++ + 
Sbjct: 66  SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNELEVPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182
            L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D+G E 
Sbjct: 122 ILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVDRGFEF 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240
            P       +EGER++E+WNLVF QF +    K ER   P  +IDTGMGLER+  VL+  
Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE RG
Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+++F
Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEEKKF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++ L       +D + F
Sbjct: 359 QETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEVQF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474
            + +EEQ+ RAR      GS     + +S  +KYG     T+F GY+ L+          
Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEGLPETKFGGYNSLKDES------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                             K I   GE      +GQ   +V D T FY E GGQ+GD G  
Sbjct: 464 ------------------KVIEIYGEDENNLKAGQMGIIVLDCTTFYGEGGGQVGDKGII 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH
Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLH 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M
Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SES
Sbjct: 626 SLEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISES 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLI 773
           S+ AG+RRIEAITG+    +L  +D  + ++   LK S +  +  R+E   EE + L   
Sbjct: 681 SVAAGVRRIEAITGRAVYKYLKERDSLIDNVKRSLKASNEDEITRRIEMNTEEIKGL--- 737

Query: 774 HAKRKLQ-LNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSG 823
             K+KL+ +  +DLS +  + +N    +         +S +D+   +   + ++ K++ G
Sbjct: 738 --KKKLKDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDG 795

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L   S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + 
Sbjct: 796 VVILAN-SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDS 853

Query: 883 NKADQAI 889
           +K D+A+
Sbjct: 854 SKVDEAL 860


>gi|118479549|ref|YP_896700.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|196034339|ref|ZP_03101748.1| alanyl-tRNA synthetase [Bacillus cereus W]
 gi|196044886|ref|ZP_03112120.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218905583|ref|YP_002453417.1| alanyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866370|ref|YP_002751748.1| alanyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|205829983|sp|A0RJ00|SYA_BACAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118418774|gb|ABK87193.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|195992881|gb|EDX56840.1| alanyl-tRNA synthetase [Bacillus cereus W]
 gi|196024374|gb|EDX63047.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218536398|gb|ACK88796.1| alanyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787137|gb|ACO27354.1| alanine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 880

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|116872933|ref|YP_849714.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123461085|sp|A0AIV3|SYA_LISW6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116741811|emb|CAK20935.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 879

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 364/928 (39%), Positives = 528/928 (56%), Gaps = 82/928 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W++  GLS + I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLSEEHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPTFGDDTSDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY  N  N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHNQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L  K   ++F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTAK---SEFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  I+Q   +V+E  SG+  +V+F +TPFY
Sbjct: 464 A----------------------TEHVSEIL-YIIQDDALVDEVASGKTAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHTANLLKATTKEAPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
            +D  + K   GI++L  +  E K +++  V+ED +   ++A  L +  A    GG GGG
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATKC-GGNGGG 848

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           RP MAQ+GG N  +   A+  V++ +K+
Sbjct: 849 RPDMAQAGGKNPAELATALDYVSTCVKE 876


>gi|300119209|ref|ZP_07056906.1| alanyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298723429|gb|EFI64174.1| alanyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 880

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHLGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYIK 876


>gi|229152592|ref|ZP_04280781.1| Alanyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228630853|gb|EEK87493.1| Alanyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 880

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  ++E G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVIEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|169824323|ref|YP_001691934.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|205830092|sp|B0S104|SYA_FINM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167831128|dbj|BAG08044.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 873

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 344/907 (37%), Positives = 525/907 (57%), Gaps = 73/907 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K      T+
Sbjct: 6   LNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E ++ + 
Sbjct: 66  SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNELEVPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182
            L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D+G E 
Sbjct: 122 ILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVDRGFEF 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240
            P       +EGER++E+WNLVF QF +    K ER   P  +IDTGMGLER+  VL+  
Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE RG
Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+++F
Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEEKKF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++ L       +D + F
Sbjct: 359 QETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEVQF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474
            + +EEQ+ RAR      GS     + +S  +KYG     T+F GY+ L+          
Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEELPETKFDGYNSLKDES------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                             K I   GE      +GQ   +V D T FY E GGQ+GD G  
Sbjct: 464 ------------------KVIEIYGEDENNLKAGQMGIIVLDCTTFYGEGGGQVGDKGII 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH
Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLH 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M
Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SES
Sbjct: 626 SLEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISES 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLI 773
           S+ AG+RRIEAITG+    +L  +D  + ++   LK S +  +  R+E   EE + L   
Sbjct: 681 SVAAGVRRIEAITGRAVYKYLKERDRLIDNVKHSLKASNEDEITRRIEMNTEEIKGL--- 737

Query: 774 HAKRKLQ-LNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSG 823
             K+KL+ +  +DLS +  + +N    +         +S +D+   +   + ++ K++ G
Sbjct: 738 --KKKLKDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDG 795

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L   S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + 
Sbjct: 796 VVILAN-SDESKVSFIALVTDSSVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDS 853

Query: 883 NKADQAI 889
           +K D+A+
Sbjct: 854 SKVDEAL 860


>gi|253578839|ref|ZP_04856110.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849782|gb|EES77741.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 879

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/911 (39%), Positives = 522/911 (57%), Gaps = 58/911 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG E P    V+T
Sbjct: 6   VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPRTRVST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ AD+I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFDIWNKEIGIPADRIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     +++G +YE N  + V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTICALRNLVCEISGKEYEKNYNDDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +     + YPEL + K  I + L +E+ +F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNEENQFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   +    ++ L+G+ AFKLYDT+G P+D+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLRILGEMEDEMKAAGEKTLSGENAFKLYDTYGFPMDLTKEILEEKGY-DIDEAG 419

Query: 418 FNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F + +EEQR++AR+     + +G  +   + I  ++      T+F+GYD L         
Sbjct: 420 FQKCMEEQRNKARSAREVTNYMGADATVYDDIDVNV-----TTEFVGYDHLT-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  +  + EIV   + GQK  V  +QTPFYA  GGQ+GDTG
Sbjct: 467 ---------------FDSKVTVLTTETEIVNSLMEGQKGTVFTEQTPFYATMGGQVGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  + D  K   G F H   +E G++ T  ++ L +D   RR    NHSATHL
Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISTGETVSLKVDEAARRDTEKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LG+HV Q GS +TPD LRFD  H + +T+ E+  +E  VN  I   L V T 
Sbjct: 572 LQKALKTVLGNHVEQKGSLVTPDRLRFDFAHFQAMTADEIAQVEALVNKEIQAGLEVRTD 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV++TG IML  IVS
Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVANTGNIMLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEA+TG     +   Q+E L   A  LK +   +V ++  +  E + L  
Sbjct: 687 ESGIAAGVRRIEALTGNGVLEYYKKQEELLHEAAKALKANPAEIVEKIGHLQGEVKALSS 746

Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +   K +L      +V D    ++  V  ++  +  VD   L+ + D L+ K+  G+++
Sbjct: 747 ENESLKSKLAQGALGDVMD-KVVEVKGVKLLAAKVDGVDMNGLRDLGDQLKGKLGEGVVL 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ EK   + +          +A +L +  A ++ GGGGGGRP+MAQ+GG N  KA 
Sbjct: 806 LAAVNGEKVNLLAMATDAAQKAGAHAGNLIKAVAAIV-GGGGGGRPNMAQAGGKNPAKAQ 864

Query: 887 QAIAGVASFLK 897
           +A+   A  L+
Sbjct: 865 EAVDAAAGILE 875


>gi|228948102|ref|ZP_04110386.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123929|ref|ZP_04253121.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228659231|gb|EEL14879.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228811460|gb|EEM57797.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 880

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADC 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|302380501|ref|ZP_07268966.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311444|gb|EFK93460.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 873

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 343/907 (37%), Positives = 525/907 (57%), Gaps = 73/907 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K      T+
Sbjct: 6   LNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E ++ + 
Sbjct: 66  SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNELEVPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182
            L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D+G E 
Sbjct: 122 ILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVDRGFEF 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240
            P       +EGER++E+WNLVF QF +    K ER   P  +IDTGMGLER+  VL+  
Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE RG
Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+++F
Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEEKKF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++ L       +D + F
Sbjct: 359 QETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEVQF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474
            + +EEQ+ RAR      GS     + +S  +KYG     T+F GY+ L+          
Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEGLPETKFDGYNSLKDES------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                             K I   GE      +GQ   +V D T FY E GGQ+GD G  
Sbjct: 464 ------------------KVIEIYGEDENNLKAGQMGIIVLDCTTFYGEGGGQVGDKGII 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH
Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLH 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M
Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SES
Sbjct: 626 SLEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISES 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLI 773
           S+ AG+RRIEAITG+    +L  +D  + ++   LK S +  +  R+E   EE + L   
Sbjct: 681 SVAAGVRRIEAITGRAVYKYLKERDSLIDNVKHSLKASNEDEITRRIEMNTEEIKGL--- 737

Query: 774 HAKRKLQ-LNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSG 823
             K+KL+ +  +DLS +  + +N    +         ++ +D+   +   + ++ K++ G
Sbjct: 738 --KKKLKDMTNKDLSSNVDSVINDAVEVNGTKVCTFELNGLDNNSFRDFGENIKSKLEDG 795

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L   S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + 
Sbjct: 796 VVILAN-SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDS 853

Query: 883 NKADQAI 889
           +K D+A+
Sbjct: 854 SKVDEAL 860


>gi|229163337|ref|ZP_04291289.1| Alanyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228620118|gb|EEK76992.1| Alanyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 880

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ ED+EAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRDGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQAGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNSKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|158320695|ref|YP_001513202.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|205829976|sp|A8MGI3|SYA_ALKOO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158140894|gb|ABW19206.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 880

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 360/912 (39%), Positives = 531/912 (58%), Gaps = 62/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FLEFF+   H + PS+ L+P  D +L+  NSGM P K  F G E+P  + + T
Sbjct: 6   VNEIRKEFLEFFRSKEHIIHPSAPLVPQKDKSLLLINSGMAPLKPYFAGLEEPPGKRMAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RH TFFEMLGNFSFG YFK+ ++   W+ +TK  +L   
Sbjct: 66  CQKCIRTG----DIENVGRTARHATFFEMLGNFSFGDYFKKESLTWGWEFVTKNLELPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           +L+ TVY +D+EAF++W K  GL  ++I+R+   DNFW +   GPCGPCSEI+FD+GE  
Sbjct: 122 KLWATVYVDDDEAFEIWNKQIGLPEERIVRLGKADNFWEIG-LGPCGPCSEIYFDRGEDY 180

Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C PG       E +RY+E WN VF QF++  +     LP  +IDTGMGLERMA 
Sbjct: 181 GCGCEECKPGC------ECDRYVEFWNHVFTQFDRDEEGNYHPLPNPNIDTGMGLERMAC 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           ++Q   + +DID  + ++ +  ++T  +Y+ +    V+ R+I DH+RS S +I DGILP+
Sbjct: 235 IMQGVDSIFDIDTMQDILNSVCKITSSEYKKDERTDVSIRIITDHVRSISLMIGDGILPS 294

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA  + +LLG     +  L+  +    G  Y EL+  K  I+  ++ 
Sbjct: 295 NEGRGYVLRRLLRRAARHGKLLGVNRAFLYELVDRVADNYGETYVELVDNKDYIKRVIKV 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T+D+G+ +L+  +  L   K+ +L+G  AFKLYDT+G P D+ ++IL  +GL+
Sbjct: 355 EEERFMETIDQGMDILNQYIEELVTLKETVLSGVNAFKLYDTYGFPFDLTKEILEEKGLS 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RAR   +G  +   ++  FS  +K   T F GY     + F  E
Sbjct: 415 -LDETGFESEMEKQRQRARDARIGADTEGWKEDIFSGLDKEIQTAFKGY-----TNFEVE 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
            +                  V AIV    +VE+   G++  V+ D+T FY E GGQ+GD 
Sbjct: 469 GK------------------VLAIVSNDTVVEQCDKGKEATVILDETAFYGEGGGQVGDI 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G    + +RL + D +K      VHH + VE G ++    +   +D   R   + NH+AT
Sbjct: 511 GTLYNEAVRLSVLDTKKGPHNQ-VHHVVRVEEGTIKIGDEVKAKVDMVTRMSTARNHTAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  I+G HV Q GS +TPD LRFD TH + +T  ++  IE+ VN  I   L V 
Sbjct: 570 HLLHKALRDIVGEHVHQAGSLVTPDRLRFDFTHFEGLTKDQITQIEEKVNQQILMALDVR 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + EDA   GA AL G KY D VRVV V     G +S+ LCGGTHV+++GEI +  +
Sbjct: 630 TFETSIEDAKKIGAQALFGEKYGDVVRVVKV-----GEYSTELCGGTHVTNSGEIGMFIM 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE+ + AG+RRIEAITG  A  ++    + ++ +A  LK    NVV RV ++  E ++ 
Sbjct: 685 LSEAGVAAGVRRIEAITGMEAYKYVQKNQKTIQEIADTLKTQVQNVVERVADLVHETKEK 744

Query: 771 QLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                K K QL   +  D+      +  +N +  ++   +  +L+ + D L++KI SG+I
Sbjct: 745 DREINKLKSQLASNSTGDILDKATVVGGINVVVEVLENQEMDDLRKIGDVLKEKIGSGVI 804

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L G S + K + + + T+D + +  +A +L + +AK+  GGGGGGRP MAQ+GG N  K
Sbjct: 805 VL-GSSNQDKVNFVAMATKDAVSKGVHAGNLVKEAAKI-AGGGGGGRPDMAQAGGKNPQK 862

Query: 885 ADQAIAGVASFL 896
             +A+  V   L
Sbjct: 863 IQEALDTVKEIL 874


>gi|229032038|ref|ZP_04188021.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228729283|gb|EEL80277.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 880

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQEGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ G+  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGKYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229543743|ref|ZP_04432803.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328163|gb|EEN93838.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 881

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 375/919 (40%), Positives = 534/919 (58%), Gaps = 72/919 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR+ FL+FF++ GH++ PS+SLIP NDP+L++ NSG+   K  F G   P    +   
Sbjct: 7   AEIRSMFLDFFKEKGHKVEPSASLIPVNDPSLLWINSGVATLKKYFDGTVIPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI  AW+LLT  K F + +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAIAWAWELLTSDKWFGMPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D ++   WKKI G+S D II +    NFW + E GP GP +EIFFD+GE 
Sbjct: 123 EKLYVTVYPDDLDSIACWKKI-GVSPDHIIPL--EGNFWEIGE-GPSGPDTEIFFDRGEK 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQ---QNKQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LPK +IDTGMGLERMA
Sbjct: 179 YDPERLGIRLLQEDMENDRYIEIWNIVLSQFNAIPGVPRSEYPELPKKNIDTGMGLERMA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGIL 291
            VLQ    NYD DLF  +IQ  E+++G KY   N       +VI DH+R+ +F +ADG L
Sbjct: 239 CVLQGVDTNYDSDLFMPIIQEVEKISGKKYRAGNKEADTAFKVIADHIRTVAFAVADGAL 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA+ YA  L      M  L+P +   M S YPE+ +    +++ +
Sbjct: 299 PSNEGRGYVLRRLLRRAVRYAIQLDIHGAFMYKLVPTVGRIMNSYYPEVEKNADFVQKVV 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           RSE+ERF +TL+ GL +L+  +    K+  E L G+  F LYDT+G P+++ ++    +G
Sbjct: 359 RSEEERFQETLNEGLSILEERIRAAKKNGLEQLPGEDIFMLYDTYGFPVELTEEYAHDQG 418

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   D   F + +E QR RAR     A S+ +  G    I          ++FIGYD L 
Sbjct: 419 LRA-DHEGFEKEMERQRERARNARQQAESMSVQGGVLGNITVK-------SEFIGYDHLE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
           G+                         V  +++ G+I E A SG+++  + DQTPFYAE+
Sbjct: 471 GTAH-----------------------VAVLLKDGDITESAASGEEIRFILDQTPFYAES 507

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +G+++++T+VQK   G  +H  +V  G ++T   +   +D   RR   
Sbjct: 508 GGQIADHGTLTAEGLKVEVTNVQKAPNGQNLHQGVVVSGTIKTGQEVFAQVDGAKRRDTE 567

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS + P  LRFD +H   +T  EL+ IE  VN+ I 
Sbjct: 568 KNHSATHLLHQALKDVLGVHVNQAGSLVEPGRLRFDFSHFGQVTEEELEKIETIVNEKIW 627

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +LPV T +   ++A A GA AL G KY + VRVV +     G +S  LCGG HVS+T +
Sbjct: 628 ASLPVTTDLKKLDEAKAMGAMALFGEKYGEIVRVVQM-----GDYSLELCGGCHVSNTAQ 682

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSES I AG RRIEA+TG+ A   +  Q   LK  ++ LK     +  R++ + 
Sbjct: 683 IGLFKIVSESGIGAGTRRIEAVTGKYAYGLMQEQLHLLKEASAKLKAKPTELPDRIDALQ 742

Query: 765 EEYRKLQLIHAKRKLQL-NVEDLSC---HKIAD-VNFMSHIISEVDSKELKSVMDALQKK 819
           +E ++ Q  +A    +L N+E  S     K+ D +N ++  +   D  +L+++ D L++K
Sbjct: 743 QELKEAQRENASLAAKLANIEAGSLVDRVKVVDGINVLAAKVEAGDMNQLRNMADDLKQK 802

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + SGII+L   + E KAS +  VT+DL+++ ++A  L +  A    GGGGGGRP MAQ+G
Sbjct: 803 LGSGIIVLAAAT-EGKASFIAGVTKDLVEKGYHAGKLVKEVASRC-GGGGGGRPDMAQAG 860

Query: 879 GPNGNKADQAIAGVASFLK 897
           G    + D A+  V  ++K
Sbjct: 861 GKQPEQIDAALQIVEEWVK 879


>gi|52141119|ref|YP_085711.1| alanyl-tRNA synthetase [Bacillus cereus E33L]
 gi|196039230|ref|ZP_03106536.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206976027|ref|ZP_03236937.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217961878|ref|YP_002340448.1| alanyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222097831|ref|YP_002531888.1| alanyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228917022|ref|ZP_04080582.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228935709|ref|ZP_04098522.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229141125|ref|ZP_04269667.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|229198515|ref|ZP_04325219.1| Alanyl-tRNA synthetase [Bacillus cereus m1293]
 gi|59798503|sp|Q634F6|SYA_BACCZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51974588|gb|AAU16138.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|196029857|gb|EDX68458.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206745779|gb|EDZ57176.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217067465|gb|ACJ81715.1| alanyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221241889|gb|ACM14599.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|228585018|gb|EEK43132.1| Alanyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228642403|gb|EEK98692.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|228823947|gb|EEM69766.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842629|gb|EEM87717.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 880

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|16800607|ref|NP_470875.1| alanyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|20532255|sp|Q92BK9|SYA_LISIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16414012|emb|CAC96770.1| alanyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 879

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 360/919 (39%), Positives = 530/919 (57%), Gaps = 64/919 (6%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSEDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +D+G      E  P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGL
Sbjct: 174 YDRGPAFGDDESDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGL 231

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ERM +++Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I D
Sbjct: 232 ERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGD 291

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I+
Sbjct: 292 GALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQ 351

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+ERF +TL+ GL +L+ +L +  +  ++ + G   FKLYDT G P+++ ++   
Sbjct: 352 KVIRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAE 411

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GL  +D   F   ++EQR RAR+    + S   + ++  +L +K   ++F+GY+    
Sbjct: 412 DHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTDK---SEFVGYNT--- 464

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T  VS I+  ++Q   +V+E  SG + +V+F +TPFYAE+G
Sbjct: 465 -------------------TEHVSEIL-YLIQDDTLVDEVASGSEAQVIFKETPFYAESG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   
Sbjct: 505 GQVADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIK 564

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I +
Sbjct: 565 NHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE 624

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V+   M   +A   GA AL G KY + VRVV V     G +S  LCGG HV +T +I
Sbjct: 625 QINVIIEEMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNTADI 679

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  
Sbjct: 680 GLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQA 739

Query: 766 EYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+++  +     +L      D+  S  +I  V  ++  ++  D  +L+  +D  + K 
Sbjct: 740 DLREVRRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKK 799

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             G+++L G  +  K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG
Sbjct: 800 IGGVLVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGG 857

Query: 880 PNGNKADQAIAGVASFLKK 898
            N  +   A+  V++++K+
Sbjct: 858 KNPAELGTALDYVSTWVKE 876


>gi|228941556|ref|ZP_04104105.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974486|ref|ZP_04135053.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981080|ref|ZP_04141381.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778621|gb|EEM26887.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785203|gb|EEM33215.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818112|gb|EEM64188.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942170|gb|AEA18066.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 880

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    ++
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFNK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLIGQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|218899557|ref|YP_002447968.1| alanyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542758|gb|ACK95152.1| alanyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 880

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V++GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKKGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESINVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|228929433|ref|ZP_04092454.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830221|gb|EEM75837.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 880

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ +++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNRLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|228902916|ref|ZP_04067057.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228967463|ref|ZP_04128492.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792240|gb|EEM39813.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856700|gb|EEN01219.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 880

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESINVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|160947669|ref|ZP_02094836.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270]
 gi|158446803|gb|EDP23798.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270]
          Length = 868

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 352/909 (38%), Positives = 536/909 (58%), Gaps = 64/909 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +LEFF+  GH  L S  LIP ND +L+  N+GM P K+ FTG +K      T+
Sbjct: 6   LNEIREEYLEFFESKGHLRLKSYPLIPNNDKSLLLINAGMAPLKDYFTGVKKMSKNRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+DNVG+T RH TFFEMLGNFSFG YFK  AI  AW+ LT++ ++D+ 
Sbjct: 66  SQKCIRTA----DIDNVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWEFLTEKLEMDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L +TVY+ED+EA+ +W+   GLSA+KI R+   DNFW + E GPCGPCSEI +D+GE  
Sbjct: 122 LLSVTVYEEDDEAYDIWRNEVGLSAEKIQRLGKEDNFWEL-EVGPCGPCSEIMYDRGE-- 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                  +   +R++EIWNLVF QF +        L   +IDTGMGLER+  VL+EK N 
Sbjct: 179 -----KYTNPDDRFMEIWNLVFTQFNKDKDGNYHRLEHPNIDTGMGLERLTLVLEEKDNI 233

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++I L   +I+  E+++G+KY+ N I  ++ RVI DH R+ +FLI DG++P+NE RGYVL
Sbjct: 234 FEIGLVDTIIKKIEEISGVKYKSNEISDISIRVIADHARAMTFLIYDGVIPSNEQRGYVL 293

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA  + +LLG  +  ++ +   +     + YPEL++    I + L +E+ +F +T
Sbjct: 294 RRLIRRAARHGKLLGIKDNFLVDVSKVVMEAYNTEYPELLEDSERIFKILNAEESKFQET 353

Query: 362 LDRGLVLLDGVLSHLGKDE------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           +++GL    G+L+   +DE      IL+GD AFKLYDT+G PLD+ ++IL  + +  +D 
Sbjct: 354 IEQGL----GILNSYIEDEKSKNSKILSGDKAFKLYDTYGFPLDLTKEILEEQKMT-VDE 408

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ +E+Q+ RAR       +G +EK    LK     T+F+GY             + 
Sbjct: 409 EAFNKNMEKQKIRARQGRNVSSAGWSEKNTDYLK-SLETTEFLGY------------TEN 455

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           +C    I L      +  +I+ QG+         K  +V D+T FY E GGQ+GD G   
Sbjct: 456 VCIGKVIKLFKDELEV--SILNQGD---------KALLVSDKTVFYGEGGGQVGDVGIIE 504

Query: 536 GDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           G   +L++ D +K K  GIF H   V  G ++    L+  ID  NRR +  NHSATHLLH
Sbjct: 505 GKHCKLKVLDTKKNKNNGIF-HSVEVIEGSVKLNDELIFKIDVNNRRDIMKNHSATHLLH 563

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+H++Q GS +  + LRFD+TH + I+  +LK +E  VND IA NL  + + +
Sbjct: 564 QALIEVLGNHINQAGSLVDANKLRFDITHFEAISPEDLKRVEQIVNDKIALNLETIIKEV 623

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E++   GA  L   KY D VRVVS      G  S  LCGGTHV +  EI +  I+SES
Sbjct: 624 PLEESSKMGAIGLFEDKYKDIVRVVSF-----GGWSIELCGGTHVKNVSEIQMFKIISES 678

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEAITG++   +L   + +++ +++ LK  +  +V +   + +E + L+   
Sbjct: 679 SVAAGVRRIEAITGRKVYDYLKKTENQIEEVSNVLKCKKAEMVSKAVSMVDEIKSLEKEL 738

Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + KL++ +  L        +I  ++F++  +   +  +L+ ++D L+ K+ + +I+   
Sbjct: 739 KEIKLEITLSSLDSFIAEKKEINGISFIAKKVEFENQNDLRDLIDKLRDKLGTSVIVFAN 798

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +  + K +  + V++DL  R  NA ++ R  AK++ GG GGGRP +A +GG + +K D A
Sbjct: 799 VY-QGKLTFTVGVSKDLNARKINAGNIVREIAKLV-GGNGGGRPDIASAGGKDLDKVDFA 856

Query: 889 IAGVASFLK 897
           +      LK
Sbjct: 857 LKQAEEILK 865


>gi|49481702|ref|YP_038439.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|59798537|sp|Q6HDD7|SYA_BACHK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49333258|gb|AAT63904.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 880

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ + TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLNVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRGSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|228910224|ref|ZP_04074042.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228849388|gb|EEM94224.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 880

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESINVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229186628|ref|ZP_04313789.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228596887|gb|EEK54546.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
          Length = 880

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 537/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI   W+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWGWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229086952|ref|ZP_04219109.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696328|gb|EEL49156.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 880

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 352/914 (38%), Positives = 536/914 (58%), Gaps = 65/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ ED+EAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDVEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHAGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++  ++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDGLQAGEEGHLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                  L   + ++    + D       VN ++  ++  D   L+++MD L+ K++S +
Sbjct: 747 --KENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLESAV 804

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  
Sbjct: 805 VVLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPA 862

Query: 884 KADQAIAGVASFLK 897
           + ++A++ V  ++K
Sbjct: 863 QVEEALSFVEEYVK 876


>gi|218680942|ref|ZP_03528839.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 556

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 296/580 (51%), Positives = 400/580 (68%), Gaps = 31/580 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ   + +D DLF+ 
Sbjct: 2   EDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFDTDLFRT 61

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           L  A E   G+K  G+   +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIMRRAM +
Sbjct: 62  LTGAIEDAVGVKAAGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIMRRAMRH 119

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
           A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF KTL+RGL LL  
Sbjct: 120 AQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERGLSLLSD 179

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
             + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F  A++ Q++ AR+
Sbjct: 180 ATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQKAEARS 238

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H  G G   TE +WF LK+K+GAT+F+GYD                       T   + +
Sbjct: 239 HWAGSGEKATETVWFELKDKHGATEFLGYD-----------------------TEAAAGV 275

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GDTG    D  ++ ++D QKK E
Sbjct: 276 VQAIVKDGAVATEAKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHGKIDVSDTQKKGE 335

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH A+  +LG+HV+Q GS 
Sbjct: 336 GLFVHSGTVVEGVFKAGDAVVLTVDHARRSRLRANHSATHLLHEAMREVLGTHVAQKGSL 395

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           + P+ LRFDV+H KP+++ ELK +E+  N+I+ QN PV TR+M+ +DAIA GA AL G K
Sbjct: 396 VAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNAPVTTRLMSVDDAIAEGAMALFGEK 455

Query: 672 YNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES++ AG+RRIEA+
Sbjct: 456 YGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGESAVGAGVRRIEAV 515

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E
Sbjct: 516 TGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDE 555


>gi|29840633|ref|NP_829739.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301683|sp|Q821R2|SYA_CHLCV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29834983|gb|AAP05617.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 875

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 343/897 (38%), Positives = 509/897 (56%), Gaps = 55/897 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H ++PSS + P NDP+++FTN+GM  FK+IF  +E   Y   TT 
Sbjct: 4   NTLRSNFLKFYANRHHTIVPSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+LD  R
Sbjct: 64  QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNLDPDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L +++I R+T  DNFWSMAETGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEK--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ ++L      
Sbjct: 182 TAASPLEDTEGERFLEYWNLVFMEFNRTAEGSLLALPNKHVDTGAGLERLVSILSGTNTV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ + LI  +EQ++G  Y  +  +    RVI DH RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRLLISKTEQLSGKTYHADEALGAAFRVIADHTRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+T+P +  ++P+L   MG AYPEL  +   I+E +  E+E + K+
Sbjct: 302 RKILRRAVNYGKRLGFTQPFLADIVPSLVDTMGEAYPELRLSLSQIQEVMTMEEENYFKS 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL       I++G+ AFKL DT+GLPLD +  +L       +D+ +F Q 
Sbjct: 362 LHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIA-LLAKDYDFTVDMETFYQL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIW--FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            EE + R+R  ++     +T+ ++   SL E    ++F+GY+ L    F           
Sbjct: 421 EEEAKERSRK-NIAKSHSSTDTVYDSLSLGEN---SEFVGYNDLSCDTF----------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIG 536
                       ++A+V  G+ V      +K  ++   TPFYAE GGQ+GD+G   C+ G
Sbjct: 466 ------------IEALVSNGKQVSSLKEKEKGALILKVTPFYAEKGGQIGDSGEIFCSDG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             I   ++       GI +HH  V +G L  + ++   ++   R+++  NH+  HLLH A
Sbjct: 514 TFI---VSHTTSPKAGIVIHHGEVSQGQLSQDQAVTAQVNCIRRKKIGNNHTGCHLLHKA 570

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR    
Sbjct: 571 LEVTLGDHIRQAGSYVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAMY 630

Query: 657 EDAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            D + S       G KY+D VRVVS  +      S  LCGGTH   TG++    I+ E +
Sbjct: 631 SDVMNSKEIKQFFGDKYSDVVRVVSAGF------SHELCGGTHAEFTGDLGYFRILKEHA 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           +  GIRRIEA+TG+ A +     +E L  +A  L+  +  ++ +++ + EE ++   Q+ 
Sbjct: 685 VATGIRRIEAVTGREAEALAHQDNENLNEIALVLQSPRDQILNKLQNVLEERKEQAKQIS 744

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + KL  ++ D     C ++ DV+++ H + E +S  L+   + L +KI   +I L   
Sbjct: 745 ELENKLIHSLLDKLIDGCQQVDDVSYLIHHLPESESHRLQQYANCLHQKIPLRLISLWTT 804

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            K  K  +   +++DL+ +   A DL ++      GG  GG+   AQ    N  +AD
Sbjct: 805 QKNGKYIIFSRISDDLVKQGLQAKDLLKIVLTPC-GGRWGGKDIFAQGSADNLPQAD 860


>gi|15834749|ref|NP_296508.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270284916|ref|ZP_06194310.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270288943|ref|ZP_06195245.1| alanyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|13878778|sp|Q9PLH5|SYA_CHLMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|7190160|gb|AAF39003.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 875

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 330/883 (37%), Positives = 504/883 (57%), Gaps = 47/883 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYTNRNHTPVASSPVFPYNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KATSPLEDADGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLSETDTV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++ + Y          RVI DH+RS SF I DG+LP N  RGYVL
Sbjct: 242 FEADVLRHLIAKVENLSEITYSPTESKGSAFRVIADHVRSLSFAITDGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  A+  I+E L +E+E F KT
Sbjct: 302 RKILRRAVNYGKRLGFHRPFLAEIVPSLIETMGEAYPELQAAETQIQEVLTTEEEHFFKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       +D+ +F + 
Sbjct: 362 LQRGGNLLHQVLKSSASLSKISGEDAFKLKDTYGLPIDEIA-LLAKDHNYTVDMDTFRKL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R +++      ++ I F   +    ++F+GYD+L    F             
Sbjct: 421 EMEAKERSRKNTVK-NKNDSDSI-FQDVDPTNTSEFVGYDMLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ IV+  EI      G++  ++   TPFYAE GGQ+GD+G    +    
Sbjct: 466 ----------IEGIVKYNEIASTLEEGEEGAIILRTTPFYAEKGGQVGDSGEIFCESGTF 515

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+  HH  + +G L+T M++   ++   R++++ NH+  HLLH AL   L
Sbjct: 516 LVSHTTTPKAGLIAHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALEVSL 575

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI- 660
           G H+ Q GS +    +R D +H+K ++  EL +IE  VN+ I +N+PV  R     D + 
Sbjct: 576 GEHIRQAGSYVDSQKIRLDFSHNKALSPEELLTIETLVNEKIRENVPVTIREALYSDVMN 635

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           +S      G KY D VRVVS  +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHARATGDIGYFRITKEHAVSTGI 689

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L  QL + + +
Sbjct: 690 RRIEATTGEDAENIARGQDTDLNEIATIIQSPKDQLLVKLRNVMEEKKDLAKQLANLENQ 749

Query: 779 L-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L Q  V+ L  SC K+ + +++ + ++E + + ++   + L K++ +  I L    K  +
Sbjct: 750 LVQQQVKSLLTSCDKVNETSYLVYHLTEEEGQRIQHYANTLHKEVPAKFISLWVTEKNDR 809

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
             VL+ V++DL+ +   +D   L  ++L   GG  GG+   AQ
Sbjct: 810 YIVLVRVSDDLVKQ--GIDAQALLEELLAPYGGRCGGKAVSAQ 850


>gi|228987640|ref|ZP_04147754.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772100|gb|EEM20552.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 880

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQTDELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229175062|ref|ZP_04302580.1| Alanyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608430|gb|EEK65734.1| Alanyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 880

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVLVVGEVMKDFYPEVVEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQEGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|299140238|ref|ZP_07033404.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298597777|gb|EFI53949.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 895

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 358/936 (38%), Positives = 535/936 (57%), Gaps = 92/936 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+S   IR  FL FF++ GH  + SSSL+P NDPTL+FTN+GM  FK++F G E   Y
Sbjct: 1   MRNLSGNQIREEFLRFFEEKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAETRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
               + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT E 
Sbjct: 61  SRAASSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIKYAWELLTSED 120

Query: 118 -FDLDQRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            F +D+ +LY+T+++       D EA + W + +G+  D+I  +   DNFW+M +TGPCG
Sbjct: 121 WFGIDKSKLYVTIFEGDAAVPRDNEAEQFWLE-AGVPKDRIYELGAKDNFWAMGDTGPCG 179

Query: 171 PCSEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           PCSEI++D        GE  P G     E+ +RY+EIWNLVFMQF++ +      LPK S
Sbjct: 180 PCSEIYYDLGLAASETGEDKPFG-----EDDQRYMEIWNLVFMQFDRSSDGVLTPLPKPS 234

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------------NN 268
           IDTGMGLER+A VLQ K +NY+ DLF  L+ A+ ++T                       
Sbjct: 235 IDTGMGLERVACVLQGKLSNYESDLFTPLLAAAVKLTNFAQSSELREASIEQLAVSDEKG 294

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
             + R+I DH R+S+FLI+DG+LPANEGRGYVLR+I+RR + + RLLG  +P M  ++ A
Sbjct: 295 AASLRIIADHARASTFLISDGVLPANEGRGYVLRKILRRGIRHGRLLGQEKPFMHEMVLA 354

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           +  EMG AYPEL  +   + + + +E+++F +TL+ G       L  + ++ + +G  AF
Sbjct: 355 VRDEMGEAYPELKDSAERVAKVVLAEEQQFARTLELG-------LRQMNEETLRSGSQAF 407

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
            LY+T G+PLD M D     G+   D+  F  A EE++ RARA   G    +   ++  L
Sbjct: 408 HLYETFGMPLDFMVDAARDAGIE-FDMAGFEAAKEEEQQRARASWKGGSQKSASPVYREL 466

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
            +    T+F GY  LR                     +G   I  A+V+ G  V E   G
Sbjct: 467 AK----TEFEGYTSLR--------------------VDGAKVI--ALVKDGVGVNELKPG 500

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           +  EVV D T FYA++GGQ+GD G    A  + +  +++  +K  +G+F H   V++ I 
Sbjct: 501 ETGEVVLDATSFYADSGGQVGDVGWLYSADHNTVVAEVSGCKKPVQGVFAHAVTVKQSIA 560

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             + ++   ++ + R  +  NH+ THLLH AL  +LG+HV Q GS      LRFD +H  
Sbjct: 561 VGD-TVDTVVNGEVRAAVMRNHTGTHLLHAALRQVLGTHVKQAGSLNDRARLRFDFSHFT 619

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSVEY 683
            +   EL+ +ED VN  +  N  V T +    D      GA AL G KY +RVRVV +  
Sbjct: 620 GVADEELQEVEDIVNRQVLANTLVQTLVDVPIDVAVHELGAMALFGEKYGERVRVVKI-- 677

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G  S+ LCGGTH+++TGEI L+ +V E ++ +G+RR+EA+TG  + +      +  K
Sbjct: 678 ---GDFSTELCGGTHIAATGEIGLVKLVGEGAVASGVRRVEAVTGTGSLAVFRRDADVAK 734

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMS 798
             A F      ++  RV    +E +KL+    + +++      +       ++  V  ++
Sbjct: 735 VAAQFGAGDADSLRARVAAQDDEMKKLRRELEQMRMKSASAATADAASSAVEVKGVKVLA 794

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-AR 857
             +  +D  ++++++D L+ K+ SG+++L G + E + S+++ VT+DL+ +  A  +  +
Sbjct: 795 QRVDALDKSQMRNLVDELRGKLGSGVVVL-GAATEGRVSLIVGVTKDLIGKVQAGKIVGQ 853

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           ++AKV   G GGGRP +A++GG +    D A+A  A
Sbjct: 854 IAAKVG--GKGGGRPDLAEAGGSDVAALDGALASAA 887


>gi|228923140|ref|ZP_04086431.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836519|gb|EEM81869.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 880

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLIGQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|242242892|ref|ZP_04797337.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233667|gb|EES35979.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 349/920 (37%), Positives = 523/920 (56%), Gaps = 79/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EA+++W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGLA 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E V+G KY  +    V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L+ +D+ +F Q +++QR RAR     + S+ + S         LK     +QF+GY+   
Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDDSQFVGYE--- 462

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T    S++  I+  GE V+ A +G+ +  +  +TPFYA +
Sbjct: 463 --------------------TTDYQSLLTHIIYNGEEVKHAEAGETIYFILRETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   + +TDV K   G  +H  +V+ G       +   ++ ++RR + 
Sbjct: 503 GGQVADKGTVGNENFEINVTDVTKAPNGQNLHKGVVQFGEATQNAKVEARVNKEDRRLIQ 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I 
Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V  + M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T E
Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763
           I L  IVSES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++
Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQL 737

Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            EE ++L     +R  ++      N+E+     I D+  ++  +   + K ++S+MD  +
Sbjct: 738 QEEEKELLKQLEQRNKEITSLKLGNIEE-QVELINDLKVLATEVEIPNPKAIRSIMDDFK 796

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+Q  II+LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ 
Sbjct: 797 SKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQG 854

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG    K  +A+  +  ++K
Sbjct: 855 GGTQPEKITEALRFIKDYIK 874


>gi|313888208|ref|ZP_07821882.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845898|gb|EFR33285.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 870

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 357/916 (38%), Positives = 536/916 (58%), Gaps = 78/916 (8%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IRT FL+FF+  GH +LPS SLIP ND +L+   +GM P K  FTG+E P  + VTT Q
Sbjct: 8   DIRTEFLKFFESKGHFILPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEEIPPAKRVTTCQ 67

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R G    D+DNVG T+RH TFFEMLGNFSFG YFK   I  AW+ LT   ++ +  L
Sbjct: 68  KCIRTG----DIDNVGLTDRHATFFEMLGNFSFGDYFKHEVIPWAWEFLTVNLEIPKEDL 123

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180
           ++TVY ED+EA+ +WK + G+  +KIIR+   DNFW + E GP GPCSEI+ D+G     
Sbjct: 124 WVTVYYEDDEAYNIWKDVVGIDEEKIIRLGKEDNFWEL-EVGPSGPCSEIYVDRGLEHGS 182

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  PGG      EG+R+IE+WNLVF QF++  +     L   +IDTGMGLER+ATVLQ 
Sbjct: 183 EDERPGG------EGDRFIEVWNLVFTQFDKDEEGNYKPLAHPNIDTGMGLERIATVLQG 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N ++ID  K +IQ   +V+G KY  + N  ++ RVI DH+R+ +F+I+D I+P+NEGR
Sbjct: 237 TDNIFEIDAIKDIIQEIAKVSGKKYGQDKNADISFRVITDHIRAMTFMISDTIVPSNEGR 296

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R LG     +  +   +    G  Y EL + +  I+E +R E+E+
Sbjct: 297 GYVLRRLIRRAARHGRKLGIERAFLYEIADMVINSWGEQYTELKENRESIKEIIRREEEK 356

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GLV L   +  +    +++L+G+ AFKLYDT+G P+D+ ++IL   G   +D+
Sbjct: 357 FLETIDGGLVRLKAHIDEMKENNEKLLDGEKAFKLYDTYGFPIDLTEEILREDGY-DVDM 415

Query: 416 ISFNQALEEQRSRARA----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             F + +++Q+ RAR      ++G  +   + ++  L     + +F+GY           
Sbjct: 416 EGFQKEMDDQKRRAREARNDSNVGWANQDNKHLFEGL-----SDEFLGY----------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                 +K   D        +  I+   EIV+    GQ+  VV D+T FY E+GGQ+GDT
Sbjct: 460 ------EKDECDAN------ITRIIADDEIVDSLEEGQEGLVVLDKTTFYGESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  I D  +L++TD +K  +G+ +H   VE G L  +  +   ID + R  +  NHS TH
Sbjct: 508 GEIISDNFKLRVTDTKKTKDGLHLHLVKVEEGRLE-KAPVKAIIDSKRRNNIRRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LGSHV+Q GS +  D +RFD +H   +T  E+  +E  VN+ I + LPV T
Sbjct: 567 LLHRALKDVLGSHVNQAGSLVMADRMRFDFSHFDAMTKEEIAEVERRVNEKIFEGLPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++   E+A   GA  L   KY D+VRV+S+     G +S  LCGGTHVS+T EI +  I+
Sbjct: 627 KVTGLEEAKEMGAIGLFEGKYQDQVRVLSM-----GDYSRELCGGTHVSNTSEISMFKIL 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I  G+RRIE+ITG     +L     K + +AS LK ++  ++ ++     +     
Sbjct: 682 SESGISNGVRRIESITGPAVYEYLNNLSAKEEEIASELKSNKDEIIQKI-----KLNIKN 736

Query: 772 LIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISE---VDSKELKSVMDALQKKIQ 821
           L  A + L+    DL+  +I+D+       N + ++I +   VD   L+ + D ++ K+ 
Sbjct: 737 LKEANKNLEKLEHDLAKDQISDITGDVREKNGIKYVIKKFDGVDVNTLRDLADEVRNKLG 796

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++   ++ + K + +  V++DL+D +  A  L +  AKV  GGGGGGRP MA +G  
Sbjct: 797 SVVVLFAAVN-DDKLNFVCAVSKDLVDKKIAAGKLIKKIAKV-AGGGGGGRPDMATAGAK 854

Query: 881 NGNKADQAIAGVASFL 896
           + +K ++A+  +   L
Sbjct: 855 DLDKVEEALNKLDELL 870


>gi|237739614|ref|ZP_04570095.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423222|gb|EEO38269.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 867

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 345/894 (38%), Positives = 519/894 (58%), Gaps = 62/894 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   LD+ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKLDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            NN++ DL   +++ + ++TG +Y  N   N   +VI DH R+ +FL+ DG++P+NEGRG
Sbjct: 239 PNNFETDLLFPILEEAARITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+V+FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEVSFKLYDTYGFPYELTEEIAEERGVTVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +K+G T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYE-------KTEDEAT 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                           EA  G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLSS-----------------------REAKDGKYL-LIFDKTPFYAESGGQVGDQGRIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H   +E+G      +  L ++   R   + NH+ATHLLH 
Sbjct: 506 SDNFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + PD LRFD +H + +T+ +L  IE+ VN+ I + + VV    +
Sbjct: 565 ALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE  
Sbjct: 625 IEEAKNLGAMMLFGDKYGEVVRVVDV-----SGFSTELCGGTHIDNIAKIGLFKIVSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773
           I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  +  +  L 
Sbjct: 680 IAAGVRRIEAKTGYGAYLAEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDAEKALE 739

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830
             K+K+ L     +   + ++N    +I+    K   +L++++D ++   +  I++L   
Sbjct: 740 SLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           S + K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K
Sbjct: 798 STQDKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESK 850


>gi|329724728|gb|EGG61234.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSA 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E V+G KY  +    V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L+ +D+ +F Q +++QR RAR     + S+ + S         LK     +QF+GY+   
Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDESQFVGYE--- 462

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T    S++  I+  GE V+   +G+ +  +  +TPFYA +
Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   + +TDV K   G  +H  IV+ G       +   ++ ++RR + 
Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I 
Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V  + M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T E
Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763
           I L+ IVSES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++
Sbjct: 678 IGLVKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQL 737

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVD---SKELKSVM 813
            EE + L      ++L+   ++++  K+ D       +N +  + +EV+    K ++S M
Sbjct: 738 QEEEKGLL-----KQLEQRNKEITSLKMGDIEEQVELINNLKVLATEVEIPNPKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG    K  +A+  +  ++K
Sbjct: 851 MAQGGGTQPEKITEALRFIKDYIK 874


>gi|331083851|ref|ZP_08332960.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403276|gb|EGG82836.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 879

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 364/908 (40%), Positives = 526/908 (57%), Gaps = 54/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD +
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QFE   +     L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+E+F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 360

Query: 360 KTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           KT+D+GL +L   +  +   GK E L+G+ AFKLYDT+G PLD+ ++IL  +G   ID  
Sbjct: 361 KTIDQGLNILSEMEAAMKAEGKTE-LSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEA 418

Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F  A++EQR +AR A S     G    ++  +      T+F+GYD L            
Sbjct: 419 GFKAAMDEQREKARIARSTTNYMGADATVYDEIDVNV-TTEFVGYDSLT----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-A 534
                        +S +  +  + EI+E     Q+  V  +QTPFYA  GGQ GD G   
Sbjct: 467 ------------CTSKITVLTTEDEIIEALTEDQRGTVFVEQTPFYATMGGQQGDKGVIT 514

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +GD    ++ D      G   H  ++ +G+L+T   + L +  + R     NHSATHLL 
Sbjct: 515 LGDA-EFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQ 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LGSHV Q GS +TPD LRFD  H + +T+ EL  +E+ VN  I   LPVVT +M
Sbjct: 574 KALKTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAKVEEIVNKEIQAALPVVTEVM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A  +GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    I+SES
Sbjct: 634 SIEEAKKAGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG    ++    ++K   +A+ LK S   +  ++  +  E + L   +
Sbjct: 689 GIAAGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSEN 748

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K ++  E +        ++  V  ++  +++VD   L+ + D L++K+  G+++L  
Sbjct: 749 ESLKAKMAQEAVGDVLNQVQEVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLAS 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           ++   K S+L +VTE       +A +L +  A ++ GGGGGGRP+MAQ+GG N +K  +A
Sbjct: 809 VAG-GKVSLLAMVTEQAQKAGAHAGNLIKGMAAIV-GGGGGGRPNMAQAGGKNPDKVPEA 866

Query: 889 IAGVASFL 896
           +   A+ L
Sbjct: 867 LETAANIL 874


>gi|315303256|ref|ZP_07873900.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628368|gb|EFR96857.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 879

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 360/923 (39%), Positives = 529/923 (57%), Gaps = 72/923 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  +W+   GL+ + I+ I  +DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWRDKIGLTDEHIVEI--DDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDENDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L +  K  ++++ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLR-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---STFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  I+    +V+E  +G + +++F +TPFY
Sbjct: 464 T----------------------TEYVSEIL-YIIHNDVLVDEVAAGSEAQLIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK          +V+ G+L T  ++ L++D   RR
Sbjct: 501 AESGGQVADKGTIQSETGLAHVEDVQKAPNKQNXXXVVVKEGVLTTGDTVKLSVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E  VN+
Sbjct: 561 ETVKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEKIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQIAVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      ++E
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKAAYHFVTEQENILKHAANLLKTTTKETPQKIE 735

Query: 762 EIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +  + R+++  +     +L      D+  S  +I  VN ++  ++  D  +L+  +D  
Sbjct: 736 LLQADLREVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNW 795

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           + K   GI++L G  +  K +++  V+ED +   ++A  L +  A    GG GGGRP MA
Sbjct: 796 KDKKIGGILVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 853

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N  +   A+  V++++K+
Sbjct: 854 QAGGKNPAELGSALDYVSTWVKE 876


>gi|315282412|ref|ZP_07870831.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613946|gb|EFR87671.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 864

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 357/913 (39%), Positives = 523/913 (57%), Gaps = 80/913 (8%)

Query: 14  FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGK 73
           FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    +   QK +R    
Sbjct: 1   FFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRT--- 57

Query: 74  HNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYD 131
            ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D  +LY+TVY 
Sbjct: 58  -NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGFDPDKLYVTVYP 116

Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----------E 181
           EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G          E
Sbjct: 117 EDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIFYDRGPSFGDDASDPE 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             PGG      E ERY+EIWNLVF QF          LPK +IDTGMGLERM +++Q+  
Sbjct: 174 LYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQDAP 227

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N++ DLF  +I+  EQ+ G+KY  +  N V  +VI DH+R+ +F I DG LP+NEGRGY
Sbjct: 228 TNFETDLFMPIIREVEQIAGVKYGQKQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGY 287

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E+ERF 
Sbjct: 288 ILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFH 347

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL+ GL +L+ +L +  +  ++++ G   FKLYDT G P+++ ++     GL  +D   
Sbjct: 348 ETLNEGLAILETILKNAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VDHAG 406

Query: 418 FNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   ++EQR RAR+    + S   + ++  +L EK   ++F+GY+               
Sbjct: 407 FEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SEFVGYNT-------------- 449

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T  VS I+  ++Q   +V+E  +G++ +V+F +TPFYAE+GGQ+ D G    
Sbjct: 450 --------TEHVSEIL-YLIQNDTLVDEVAAGEEAQVIFKETPFYAESGGQVADKGTIES 500

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHLLH A
Sbjct: 501 ETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRA 560

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV   M  
Sbjct: 561 LKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPI 620

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVSE+ I
Sbjct: 621 AEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSETGI 675

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R++     K
Sbjct: 676 GAGTRRIEAVTGKEAYRFVTEQENTLKHAANLLKTTTKETPQKVEQLQADLREV-----K 730

Query: 777 RKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           R+ +  +  L+    AD          V  ++  ++  D  +L+  +D  + K   G+++
Sbjct: 731 RENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLV 790

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G  +  K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  + 
Sbjct: 791 L-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAEL 848

Query: 886 DQAIAGVASFLKK 898
             A+  V++++K+
Sbjct: 849 GTALDYVSTWVKE 861


>gi|262189584|ref|ZP_06047986.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|262034534|gb|EEY52872.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
          Length = 781

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 344/805 (42%), Positives = 477/805 (59%), Gaps = 67/805 (8%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFKE AIQ AW+ LT    L + RL +TVY+ D+EAF +W K  G+ AD+I
Sbjct: 1   MLGNFSFGDYFKEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRI 60

Query: 152 IRITT--------NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWN 202
           IRI          +DNFW M +TGPCGPC+EIF+D GE I GG PGS EE G+R+IEIWN
Sbjct: 61  IRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGEHIWGGPPGSPEEDGDRFIEIWN 120

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            VFMQF +        LPK S+DTGMG+ER++ ++Q   +NY+ID+F+ LI+A+    G 
Sbjct: 121 NVFMQFNRHADGTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIGY 180

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
           +   N  +  RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG      
Sbjct: 181 QDLTNQSL--RVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFF 238

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             L+  L   MG+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L
Sbjct: 239 HKLVGPLAEVMGTAGAELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQL-SGQVL 297

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G+  FKLYDT+G P D+  D+   RG + ID   F QA+EEQR RAR       +G   
Sbjct: 298 DGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRARE------AGQFG 350

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
             + SL +    T+F GY   RG                        S+V+ +  +G  V
Sbjct: 351 TDYNSLIKSATNTEFCGYTASRGQ-----------------------SVVREMFVEGAEV 387

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
               +G K  +V D TPFYAE+GGQ GDTG    D     + D QK    I  HH ++ +
Sbjct: 388 STLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQ 446

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G+L T   +   +D + R  +S+NHSATHLLH AL  +LG HV+Q GS +  + LRFD +
Sbjct: 447 GVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFS 506

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           H + +T AE+K +E  VN  I  N  + T IMN ++A A GA AL G KY+D+VRV+S+ 
Sbjct: 507 HLEAMTPAEIKEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM- 565

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---- 738
               G  S+ LCGG H S+TG+I L  I+SE  I AGIRRIEA+TG+ A  +L  Q    
Sbjct: 566 ----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQAQH 621

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           D K+  +A+  K+ +       +EI +   KL    AK    L  +     +IA VN + 
Sbjct: 622 DAKVSEMAAKAKLLE-------KEIQQLKDKLA---AKESAGLINQ---VKQIAGVNVLV 668

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             ++  D+K L+ ++D L+ ++ SGIIML  ++ E K  ++  VT DL ++  A +L  +
Sbjct: 669 AQLNGADNKALRGMVDDLKNQLSSGIIMLGNVA-EGKVGLIAGVTNDLTNKVKAGELVNM 727

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGN 883
            A  + GG GGGRP MAQ+GG + +
Sbjct: 728 VALQV-GGKGGGRPDMAQAGGTDAH 751


>gi|193213512|ref|YP_001999465.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193086989|gb|ACF12265.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 885

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 349/924 (37%), Positives = 509/924 (55%), Gaps = 73/924 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR +FL+FF    H ++ S+ +IP  DPTL+FTN+GM  FK++F G+    Y    
Sbjct: 2   NSREIRQSFLDFFAAKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T  + L +
Sbjct: 62  DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTDVWKLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY TVY +DEE+FKLW+  + +    I++    DNFW M ETGPCGPCSEI  D    
Sbjct: 122 ERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTPD 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             GG P  +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  VLQ K++
Sbjct: 182 GSGG-PLVNVGDHRVIELWNLVFIQYDRQADGSLQPLPQKHVDTGMGFERVTAVLQGKSS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NYD D+F  L +   ++TG++Y  +      +  RVI DH R+ +F ++DG +P NEGRG
Sbjct: 241 NYDSDVFTPLFEKITELTGVRYTASLDSATDIAMRVIADHCRTLTFALSDGAMPGNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ YA  LG  EP+M  ++  L   MG  +PEL + +  +E+ +R+E+E F
Sbjct: 301 YVLRRILRRAVRYAGTLGCHEPIMYKMVEVLVRTMGDVFPELEKQQPTVEKIIRAEEESF 360

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TL RG  + + V++ +       ++G+ AFKLYDT G PLD+ + +    G  GID  
Sbjct: 361 LVTLGRGTEIFNEVVAGMKTSGSTTISGEDAFKLYDTFGFPLDLTRLMAAEVGF-GIDEE 419

Query: 417 SFNQALEEQRSRA---RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            F   + EQ++RA   R   + +     E  WF+ +     T+F+GYD L          
Sbjct: 420 GFEHCMTEQKTRARMDRKDKMQVQDDGGEWQWFAPE---APTEFVGYDTLE--------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T+   + VK              G ++ VV D+TPFYAE+GGQ+GD G 
Sbjct: 468 -----------TSATLTAVK------------TGGDRLMVVLDRTPFYAESGGQVGDHGT 504

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT------------EMSLVLTIDYQNRR 581
              D  RL +TD +K  E + +H     R  +R              +S+   +D   R 
Sbjct: 505 IETDDYRLDVTDTRKDGE-LVIHFVTSARDKVRDCAVSPADLSFEGAVSVEAAVDRDRRV 563

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               NH+ATHLLH AL  +LG HV Q GS +TP+ LRFD +H   ++  E++ +E  VN 
Sbjct: 564 ATERNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSPEEMEQVEHEVNA 623

Query: 642 IIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I +   V     +  E+A+  GA A  G KY DRVRVV V     G+ S  LCGGTHV 
Sbjct: 624 QIRKAAGVTKHADVPYEEALELGALAFFGDKYADRVRVVDVP----GI-SIELCGGTHVG 678

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-R 759
           + G+I ++ IVSESS+ AGIRRIEA+TG  A + L  +   L+ + + LK+      G +
Sbjct: 679 NIGQIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRNLQEIKNLLKLKADEEAGPK 738

Query: 760 VEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           ++E+ +E + L     + +L     QL+    S  +I     M+  +  +   EL+    
Sbjct: 739 IKELLDEKKALDKQLQESRLSGLLNQLSATLASAAEIGGCRIMTEQLDGLGGDELRQAAV 798

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPH 873
           AL+++      +L  ++  K   V     E + L + NA  L + +A  +  GGGGG+P 
Sbjct: 799 ALREQASCAAGLLCSVTDGKVFLVGFASDEAVKLKKINAGKLVKEAAACV-KGGGGGKPE 857

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +A +GG + +   +AI    + +K
Sbjct: 858 LATAGGKDPDGIGKAIETFVASVK 881


>gi|313683350|ref|YP_004061088.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313156210|gb|ADR34888.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 851

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 357/895 (39%), Positives = 518/895 (57%), Gaps = 54/895 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           +R  FL FF+   HE +PSS L+P +D TL+FTN+GMVPFK+IFTG    P     T+ Q
Sbjct: 4   VREAFLAFFESKQHERVPSSPLVP-DDATLLFTNAGMVPFKSIFTGDIPIPANPRATSAQ 62

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L + +L
Sbjct: 63  TCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAHAWEFVTEVMKLPKEKL 122

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           ++TV++ D+EA ++WKK   ++AD+I+R+   DNFW M +TGPCGPCSEIF DQG E   
Sbjct: 123 WVTVHESDDEAEEIWKK--HIAADRIMRLGDKDNFWQMGDTGPCGPCSEIFIDQGAEHFN 180

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+  K E   LPK SIDTGMGLER   VL+  T+NY
Sbjct: 181 GPEDYMGGDGDRFLEIWNLVFMQYERNAKGELKPLPKPSIDTGMGLERATAVLEGVTSNY 240

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I+  E + G  Y      ++RVI DH+R+ +FL+A G   +NEGRGYVLRRI
Sbjct: 241 DSTLFMPIIKKVEALIGKPYVYATGASYRVIADHIRTVTFLLAQGTNFSNEGRGYVLRRI 300

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+T+P M  +   +   MG  YP +++   +++E +  E+ERF KT+  
Sbjct: 301 LRRAVRHGYLLGFTKPFMFEVADTVAELMGKQYPYIVEKLAVLKEQIMLEEERFFKTIAS 360

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  L +       +G+VAFKLYDT G PLD+ +D+L  + L+ +D+ +F   + E
Sbjct: 361 GIELFNEELKN--TKGTFSGEVAFKLYDTFGFPLDLTEDMLREKNLS-LDVETFETLMSE 417

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR RA+A   G G    E  + +L E +G   FIGY                  K P+  
Sbjct: 418 QRKRAKAAWKGSGDAHVEGDFKTLLETFGVNTFIGY---------------AYTKAPV-- 460

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                 I   + +  E V++  + QK  V+ ++TPFYAE+GGQ GDTG        L   
Sbjct: 461 -----KIQALLGENFERVDQLHAHQKGWVLLEETPFYAESGGQCGDTGTLDDKATVLDT- 514

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
              KK  G+ + H I  +  L    ++   +D + R +++ +HSATHLLH AL  +LG H
Sbjct: 515 ---KKFHGLNLSH-IETKATLSVGDTVNALVDPE-RNEIAKHHSATHLLHAALYEVLGEH 569

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +SQ GS +  + LRFD +H K ++  E+  +E+ VN  +   L  +TR M+ +DA  SGA
Sbjct: 570 ISQAGSLVEHNRLRFDFSHPKAMSHEEIALVEERVNYHVFHALEGMTREMSIDDAKKSGA 629

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            A  G KY D VRVV+      G  S   CGG HV +T  I    IV ES + AG+RRIE
Sbjct: 630 KAQFGEKYGDTVRVVNF-----GTASIEFCGGVHVDNTATIGTFVIVKESGVSAGVRRIE 684

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV- 783
           A+ G  A +    Q   L+ + +   V   +V+  +E + E+ + L+  H    L  +  
Sbjct: 685 AVCGNAAYNLFKQQRHLLEEVEA--SVKNRDVLAGIERLKEQVKTLK--HEMSALASSAK 740

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           E+L+   I      + +++E+ + ++K  +D L+ +  S  ++L  I  +K    +++  
Sbjct: 741 EELAVTMIGST---AVVVAELGAGDIKERIDELKNQHDSVAVLLFQIKDDK----VLLAA 793

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   A D  +  A +L GGGGGGRP  AQ+GG + +K  +A     +++ K
Sbjct: 794 GAKNTPLKAGDWIKTIAPIL-GGGGGGRPDFAQAGGKDASKLGEAKDAALAYVTK 847


>gi|262066712|ref|ZP_06026324.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379511|gb|EFE87029.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 867

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 340/894 (38%), Positives = 527/894 (58%), Gaps = 62/894 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKLNKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            NN++ DL   +++ + ++TG +Y  N+  N   +VI DH R+ +FL+ DG++P+NEGRG
Sbjct: 239 PNNFETDLLFPILEEAARITGSQYGKNSETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLRE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +K+G T+F GY+ ++      ++ K+
Sbjct: 418 -EFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYENIQ------DEAKL 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  +                        EA  G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 471 LSSR------------------------EAKDGKYL-LIFDKTPFYAESGGQVGDQGRIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H   +E+G      +  L ++   R   + NH+ATHLLH 
Sbjct: 506 SDDFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + PD LRFD +H + +T+ +L  IE+ VN+ I + + VV    +
Sbjct: 565 ALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIEVVVSHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE  
Sbjct: 625 IEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  ++   +L 
Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKETERELE 739

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830
             K+K+ L     +   + ++N +  +++    K   +L++++D ++   +  +++L   
Sbjct: 740 TLKQKIALFETKAALSGMEEINGVKVLVAAFKDKKAEDLRTMIDTIKDNNEKAVVVLA-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           S + K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K
Sbjct: 798 STQDKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESK 850


>gi|254303692|ref|ZP_04971050.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323884|gb|EDK89134.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 867

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 350/914 (38%), Positives = 536/914 (58%), Gaps = 76/914 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   LD+ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKLDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAERIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            NN++ DL   +++ + ++TG +Y  N  ++   +VI DH R+ +FL+ DG++P+NEGRG
Sbjct: 239 ANNFETDLLFPILEEAAKITGSQYGKNPEIDFSLKVITDHARAVTFLVNDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGYT+  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLRE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+ +      +++ K+
Sbjct: 418 -EFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGITKFTGYEKI------EDEGKL 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + EA  G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 471 LS------------------------IREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDSFEAKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDIVKRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS +  + LRFD +H + +T+ +L  IED VN+ I + + V      
Sbjct: 565 ALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVAVSHHT 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE  
Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
           I AG+RRIEA TG  A  +L+ ++E   LK +   LK +  N+V +VE+  E  R  + +
Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEREEANILKDIEKKLKATNINLVEKVEKTLETLRDTEKE 737

Query: 772 LIHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L   K+KL L        ++E++   K+    F      +  +++L++++D ++   + G
Sbjct: 738 LETLKQKLALFETKSAISDMEEIGGAKVLIATF-----KDKSTEDLRTMIDTIKDNNEKG 792

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   S + K S  + VT+ L D+  A DL +  A++  GG GGGRP  AQ+GG +  
Sbjct: 793 IIVLA--STQDKLSFAVGVTKTLTDKVKAGDLVKKLAEIT-GGKGGGRPDFAQAGGKDEG 849

Query: 884 KADQAIAGVASFLK 897
           K   A   V   ++
Sbjct: 850 KLLDAFKEVREIIE 863


>gi|319651658|ref|ZP_08005785.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396725|gb|EFV77436.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 360/917 (39%), Positives = 541/917 (58%), Gaps = 72/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AEIRRMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT +     + 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIIWAWEFLTDKNWIGFED 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +L +T++ ED+EAFK+W++  G+  ++IIR+    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLSVTIHPEDDEAFKIWREKVGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E +RY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 180 YGNDPEDPELYPGG------ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           MA+V+Q    N+D DLF  +I+ +E+++G KY  +    V  +VI DH+R+ +F + DG 
Sbjct: 234 MASVVQNVPTNFDTDLFMPIIRGTEEISGKKYGASKETDVAFKVIADHIRTVAFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +   EP M  L+P +   M   YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQININEPFMYDLVPVVGEIMHDFYPEVKEKTEFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +++E+ERF +TL  GL +L  V+      G   I   DV F+LYDT+G P+++ ++    
Sbjct: 354 IKNEEERFHETLHEGLAILSSVIKKEKEKGSVTIQGADV-FRLYDTYGFPVELTEEYAEE 412

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F + +E QR RAR+    + S   +     L E    ++F+GYD L+   
Sbjct: 413 EGMK-VDHAGFEKEMEGQRERARSARQDVDSMQVQG--GVLGELKIESEFVGYDKLQ--- 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                ++ V AIV+ G++++EA +G++V+++ ++TPFYAE+GGQ
Sbjct: 467 --------------------TAAKVAAIVKDGQLIDEAHAGEEVQLILNETPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G    +G+++ I DVQK   G  +H A++E G L+ E S++ ++D Q R ++  NH
Sbjct: 507 IADQGTLKAEGLKVSIKDVQKAPNGQNLHRAVIEEGTLKAEASVLASVDEQIRSKVIKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LGSHV+Q GS + PD LRFD +H   ITS EL+ IE  VN+ I  +L
Sbjct: 567 TATHLLHQALKDVLGSHVNQAGSLVGPDRLRFDFSHFGQITSEELEKIEAIVNEQIWVSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     + ++A A GA AL G KY   VRVV V     G +S  LCGG HV +T  I L
Sbjct: 627 DVDINFKDIDEAKAMGAMALFGEKYGKIVRVVQV-----GDYSLELCGGCHVPNTSSIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I SES I AG RRIEA+TG+ A   L  Q   LK  +  LK +  ++  R++ +  E 
Sbjct: 682 FKIQSESGIGAGTRRIEAVTGEAAYKLLNDQIHVLKEASGKLKTNPKDLSSRIDVLLGEM 741

Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L N+E  S      +I  +  ++  +   D   L+++ D L++K+ S
Sbjct: 742 KQLQRENESLAAKLGNIEAGSLVSKAKEINGITVLAEKVQASDMNNLRNMADDLKQKLGS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGP 880
            +++L G   E K +++  VT+DL+ + F+A    + ++AK    GGGGGRP MAQ+GG 
Sbjct: 802 AVVVL-GSVNEGKVNIIAGVTDDLIKKGFHAGKAVKEVAAKCG--GGGGGRPDMAQAGGK 858

Query: 881 NGNKADQAIAGVASFLK 897
           +  K + A+  V  ++K
Sbjct: 859 DPEKLESALQFVEEWVK 875


>gi|27468219|ref|NP_764856.1| alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867101|ref|YP_188758.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811025|ref|ZP_04825498.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875956|ref|ZP_06284823.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|33301694|sp|Q8CSA7|SYA_STAES RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71153555|sp|Q5HNT2|SYA_STAEQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27315765|gb|AAO04900.1|AE016748_134 alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637759|gb|AAW54547.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805443|gb|EES58100.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294981|gb|EFA87508.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 351/923 (38%), Positives = 523/923 (56%), Gaps = 85/923 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSA 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E V+G KY  +    V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L+ +D+ +F Q +++QR RAR     + S+ + S         LK     +QF+GY+   
Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDESQFVGYE--- 462

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T    S++  I+  GE V+   +G+ +  +  +TPFYA +
Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   + +TDV K   G  +H  IV+ G       +   ++ ++RR + 
Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I 
Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V  + M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T E
Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763
           I L  IVSES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++
Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQL 737

Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMD 814
            EE + L     +R  ++      N+E+    ++  +N +  + +EV+    K ++S MD
Sbjct: 738 QEEEKGLLKQLEQRNKEITSLKMGNIEE----QVELINNLKVLATEVEIPNPKAIRSTMD 793

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             + K+Q  II+LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP M
Sbjct: 794 DFKSKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDM 851

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ GG    K  +A+  +  ++K
Sbjct: 852 AQGGGTQPEKITEALRFIKDYIK 874


>gi|251773418|gb|EES53967.1| alanyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 884

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 344/873 (39%), Positives = 482/873 (55%), Gaps = 53/873 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +F  FF+  GH  +PSSSLIP  DPTL+FTN+GMVPFK+ F G E P      ++Q+
Sbjct: 6   IRNSFHGFFEGVGHRRVPSSSLIPPGDPTLLFTNAGMVPFKDAFLGTEPPPAPRCVSIQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW+ LTK   L    L+
Sbjct: 66  CVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAIAFAWEYLTKTLGLSPSVLW 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TV+ +D+EA  LW+ ++G+   +I+R+   DNFW M  TGPCGPCSEI  DQG     G
Sbjct: 126 VTVFTDDDEAASLWQSVAGVDPSRIVRLGEKDNFWQMGNTGPCGPCSEILVDQGSAFSCG 185

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  +   + +RY+EIWNLVFMQ+++ +      LP+ SIDTGMGLER+A+VLQ   +N+
Sbjct: 186 RPTCAVGCDCDRYLEIWNLVFMQYDRNDAGILTPLPRPSIDTGMGLERLASVLQGSQSNF 245

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DLF  L++A  + T + Y   +G     +RVI DH+R+S+FL+ +G++P+NEGRGYVL
Sbjct: 246 ETDLFLPLMEAIGKKTRIPYGRGQGEKDFAYRVIADHVRASTFLVWEGLVPSNEGRGYVL 305

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR +RRAM ++  L    P +  L       M + YPEL      +   L SE+ERF KT
Sbjct: 306 RRFIRRAMQFSLDLALPTPFLPDLSRRFAELMAAPYPELAAGMDRVVTVLASEEERFMKT 365

Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L+ GL L+  +     +  + +L G+  F LYDTHGLP+D++ D     G+  +D   F 
Sbjct: 366 LETGLPLVQELARSARERGETVLTGEELFWLYDTHGLPVDVVGDWAAPLGVT-LDTEGFA 424

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQFIGYDLLRGSKFMKEDRKVLC 477
             + EQ+ + R       S T  +  F L         +F GY+ L     +        
Sbjct: 425 VRMGEQKEQGRR------SWTGSRASFPLPASRLSSPVRFEGYERLESPARL-------- 470

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
               + L +G S            V+    G+++  V D +PFY E GGQ+GD G  +  
Sbjct: 471 ----LLLASGESE-----------VQSVREGEEIWAVTDVSPFYPEGGGQVGDQGRLVAP 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G  + I+   +   G       V  G++    ++ L +D   R    ++H+ATHLLH AL
Sbjct: 516 GGIVSISGAYRPYPGWIALRGKVLSGVVTQGETVQLQVDRSLRLGARVHHTATHLLHAAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV Q GS + PD LRFD +H  PIT  +++ IE  VN  I +  PV     N+ 
Sbjct: 576 RKVLGSHVRQAGSLVLPDRLRFDFSHGAPITDGQIEEIEGMVNRWIGEGAPVEISEKNKA 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA+ASGA A    KY DRVRVV +        S  LCGGTH  ST EI   +I+SES + 
Sbjct: 636 DALASGAMAFFDEKYGDRVRVVEIPG-----MSVELCGGTHALSTSEIGSFFILSESGVA 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG RRIEA+ G  A     G   +L  +A  LKVS G ++ R+     E  +++   ++ 
Sbjct: 691 AGTRRIEAVAGAAATRTAAGWRAELHRIAGDLKVSPGRILDRIAAEKREREEIEKELSRS 750

Query: 778 KLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K +L   DL    + D       V  +  ++   D  +L+  MD L+ +I SG ++L G 
Sbjct: 751 KSRLF--DLETQSLLDESMMVGEVRILVAVVESRDLADLRLRMDVLKGRIPSGAVILAGK 808

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           + + +  +L   T DL   F      R  A+ L
Sbjct: 809 AGDDRVLLLGWATPDLEKTFPVNTWVRSMAQTL 841


>gi|260587849|ref|ZP_05853762.1| alanine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|260542114|gb|EEX22683.1| alanine--tRNA ligase [Blautia hansenii DSM 20583]
          Length = 892

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 364/908 (40%), Positives = 524/908 (57%), Gaps = 54/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 19  VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 78

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD +
Sbjct: 79  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 134

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 135 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 193

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QFE   +     L + +IDTGMGLER+A+V+Q+  
Sbjct: 194 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 253

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 254 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+E+F 
Sbjct: 314 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 373

Query: 360 KTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           KT+D+GL +L   +  +   GK E L+G+ AFKLYDT+G PLD+ ++IL  +G   ID  
Sbjct: 374 KTIDQGLNILSEMEAAMKAEGKTE-LSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEA 431

Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F  A++EQR +AR A S     G    ++  +      T+F+GYD L            
Sbjct: 432 GFKAAMDEQREKARIARSTTNYMGADATVYDEIDVNV-TTEFVGYDSLT----------- 479

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-A 534
                        +S +  +  + EI E     Q+  V  +QTPFYA  GGQ GD G   
Sbjct: 480 ------------CTSKITVLTTEDEITEALTEDQRGTVFVEQTPFYATMGGQQGDKGVIT 527

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +GD    ++ D      G   H  ++ +G+L+T   + L +  + R     NHSATHLL 
Sbjct: 528 LGDA-EFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQ 586

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LGSHV Q GS +TPD LRFD  H + +T+ EL ++E+ VN  I   LPVVT +M
Sbjct: 587 KALKTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAAVEEIVNKEIQAALPVVTEVM 646

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A   GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    I+SES
Sbjct: 647 SIEEAKKVGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISES 701

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG    ++    ++K   +A+ LK S   +  ++  +  E + L   +
Sbjct: 702 GIAAGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSEN 761

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K ++  E +         +  V  ++  +++VD   L+ + D L++K+  G+++L  
Sbjct: 762 ESLKAKMAQEAVGDVLNQVQDVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLAS 821

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           ++   K S+L +VTE       +A +L +  A ++ GGGGGGRP+MAQ+GG N +K  +A
Sbjct: 822 VAG-GKVSLLAMVTEQAQKAGAHAGNLIKGMAAIV-GGGGGGRPNMAQAGGKNPDKVPEA 879

Query: 889 IAGVASFL 896
           +   A+ L
Sbjct: 880 LEAAANIL 887


>gi|288555383|ref|YP_003427318.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288546543|gb|ADC50426.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 879

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 358/918 (38%), Positives = 530/918 (57%), Gaps = 73/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQVRQMYLDFFKEKGHDIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +L +TV+ ED EA+  W K  G+  ++IIR+    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLSVTVHPEDNEAYDYWAKNIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPS 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 180 YGDDANDPELYPGG------ENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   N++ DLF  +IQA+EQ+T +KY  +    V  +VI DH+R+ +F + DG 
Sbjct: 234 MVSVIQDTKTNFETDLFMPIIQATEQLTSVKYGADTETDVAFKVIADHVRTVTFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+L+G   P M  L+P +   M   YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKLIGIDRPFMYELVPVVGEIMVDFYPEVKEKTEFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GK-DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +LD +L+   GK +E+++G   F+LYDT+G P+D+ ++ +  +
Sbjct: 354 MKTEEERFHETLNEGLGILDKILAEAKGKNEEVISGSDVFRLYDTYGFPVDLTEEYVEEK 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  ID   F   +E+QRSRARA     GS   +     L E    + F+GY+ L     
Sbjct: 414 GLT-IDRDGFEVEMEQQRSRARAARQESGSMQVQDEL--LGEINAESTFVGYNQL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  V  ++   E +    +G+  +V+   TPFYAE+GGQ+
Sbjct: 466 ------------------SAEGTVSVLIAGKERMSSVPAGETAQVILSTTPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG  +G+G+  ++T+V K   G  +H  +VE G L+  +++  T++  +R  +  NH+
Sbjct: 508 ADTGTIVGEGVIARVTEVTKAPNGQHLHTVVVEEGELKEGVTVTSTVEETSRIGIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS ++ D LRFD +H   +T  EL  IE+ VN+ +   + 
Sbjct: 568 ATHLLHQALKDVLGVHVNQAGSLVSEDRLRFDFSHFGQVTKEELTKIEEIVNEKVWNAIS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VDISEKKLAEAKEMGAMALFGEKYGDTVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            +VSES I AG+RRIEA+TGQ A   +  Q   L + +  +K     +V  R+E + ++ 
Sbjct: 683 KVVSESGIGAGVRRIEAVTGQGAYEFMNDQLRLLTTASELVKAKNVKDVPARIEAMQQQI 742

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKI 820
           R LQ       L   + ++    + D       V  +S  ++  D   L++++D L++ +
Sbjct: 743 RDLQ--RENESLSSKLGNMEAGNLIDEAVEVNGVKVLSKEVNASDMDGLRAIVDKLKQDL 800

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            SG+I+L  +S E K +++  VT+DL+ +  +A  L +  A    GGGGGGRP MAQ+GG
Sbjct: 801 DSGVIVLGAVSGE-KVNLVAGVTKDLISQGHHAGKLVKEVASRC-GGGGGGRPDMAQAGG 858

Query: 880 PNGNKADQAIAGVASFLK 897
               +  +A+A V  F+K
Sbjct: 859 KKPEQLAEALAYVPEFVK 876


>gi|319957309|ref|YP_004168572.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319419713|gb|ADV46823.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 859

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 349/900 (38%), Positives = 522/900 (58%), Gaps = 62/900 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTVQ 65
           IR  +L++F + GH ++PSS L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 3   IRKMYLDYFAQRGHRVVPSSPLVP-DDPTLLFTNAGMVQFKSIFTGEAPIPNPPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQR 123
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T E    L   
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFVTGEEYLALPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182
           ++++TV++ D+EA+++WK+   ++ ++I R    DNFW M +TGPCGPCSEIF+DQG E 
Sbjct: 122 KIWVTVHESDDEAYEIWKE--HIAEERIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGAEH 179

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +G+R++EIWNLVFMQ+E+    E   LPK SIDTGMGLER+  + +   N
Sbjct: 180 FNGPEDYMGGDGDRFLEIWNLVFMQYERDETGELHPLPKPSIDTGMGLERVVAIKEGVFN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYD  LFK LI A  ++ G       I ++RVI DHLRS++FL+A G+    EGRGYVLR
Sbjct: 240 NYDSSLFKPLIDAITEIVGKAPTEETIASYRVIADHLRSTTFLLAQGVNFDKEGRGYVLR 299

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RIMRRA+ +  LLG  EP M  L+  L  +MG  Y  L +    ++  ++ E+ERF +T+
Sbjct: 300 RIMRRAIRHGYLLGLREPFMHRLVDTLVEQMGGHYDYLPKRAEAVKTAMKMEEERFFETI 359

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           + G+ L +  L      ++ +G+VAFKLYDT+G PLD+ QD+L  +G+  +D+ +F   +
Sbjct: 360 EAGIKLFNEELQRT--KDVFSGEVAFKLYDTYGFPLDLTQDMLREKGIE-LDMATFEGKM 416

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQ++++RA   G G       + +L+E++G  +F+GY                      
Sbjct: 417 AEQKAKSRAAWKGSGDAAVSGDFKALEERHGPNRFVGY---------------------- 454

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVE----VVFDQTPFYAEAGGQLGDTG--CAIG 536
           + T+  + IV  + +  + V      QK+E    V+ D TPFYAE+GGQ+GD G      
Sbjct: 455 EETDTKTRIVALLDENFKEV------QKLEGLGWVMLDPTPFYAESGGQVGDRGELVVWS 508

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G  +++ D  +K   + + +   E   L     +   +D  +RRQ++ +HSATHLLH A
Sbjct: 509 GGPNVKVLDT-RKFHALNLSYVDTEGNTLEVGQEVEALVD-DSRRQIAKHHSATHLLHAA 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +    LRFD TH K +++ EL+ +E  VN+++ + +    +++  
Sbjct: 567 LREVLGEHVTQAGSLVEATRLRFDFTHPKALSAEELQKVEHWVNEVVDRAIEGEVKVLPI 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA AL G KY D VRVV       G  S  LCGGTHV +T E+ L  I  ES +
Sbjct: 627 EEAKKEGAMALFGEKYGDEVRVVRF-----GDASVELCGGTHVRNTAEVGLFAITKESGV 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+ G+ +         + K +   +K  +   +  + ++ E+ + L+     
Sbjct: 682 SAGVRRIEAVCGKESAKLFDHLRRERKEIVEAVKNPE--PLAGIAKLKEQIKTLK-SELD 738

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             L    ++L+  KI D+     I+ EV + ++K ++D ++ + +   +ML     +KK 
Sbjct: 739 AALAGGAKELAEEKIGDITV---IVDEVKAGDIKKMIDEIKNRHEKVAVMLF----QKKG 791

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +++          A D  +  A +L GGGGGGRP  AQ+GG N  K  +A+     +L
Sbjct: 792 DKVLLAAGSKNTPVKAGDWIKEVAPIL-GGGGGGRPDFAQAGGKNPEKIPEAMRAAKGYL 850


>gi|260494135|ref|ZP_05814266.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260198281|gb|EEW95797.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 867

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 344/894 (38%), Positives = 524/894 (58%), Gaps = 62/894 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +D+ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKIDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N+  +   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGMQLVNQEIDNLLTNGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYE-------KTEDEGK 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + EA  G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLS-----------------------LREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDNFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDIVRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V     +
Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSES 
Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVP-----GFSTELCGGTHIDNIGKIGLFKIVSESG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773
           I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  + +L 
Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKELE 739

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830
             K+KL L     +   + ++     +++    K   +L++++D ++ + +  II+L   
Sbjct: 740 ALKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           S + K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K
Sbjct: 798 STQDKLAFAVGVTKTLTDKIKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEK 850


>gi|293366424|ref|ZP_06613102.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319458|gb|EFE59826.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735187|gb|EGG71479.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 351/923 (38%), Positives = 522/923 (56%), Gaps = 85/923 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLNFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSA 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E V+G KY  +    V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L+ +D+ +F Q +++QR RAR     + S+ + S         LK     +QF+GY+   
Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDESQFVGYE--- 462

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T    S++  I+  GE V+   +G+ +  +  +TPFYA +
Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   + +TDV K   G  +H  IV+ G       +   ++ ++RR + 
Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I 
Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V  + M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T E
Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763
           I L  IVSES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++
Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQL 737

Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMD 814
            EE + L     +R  ++      N+E+    ++  +N +  + +EV+    K ++S MD
Sbjct: 738 QEEEKGLLKQLEQRNKEITSLKMGNIEE----QVELINNLKVLATEVEIPNPKAIRSTMD 793

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             + K+Q  II+LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP M
Sbjct: 794 DFKSKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDM 851

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ GG    K  +A+  +  ++K
Sbjct: 852 AQGGGTQPEKITEALRFIKDYIK 874


>gi|91202499|emb|CAJ72138.1| strongly similar to alanyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 885

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 355/910 (39%), Positives = 520/910 (57%), Gaps = 65/910 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  FL FF+K  H + P  SL+P  D TL+FT +GM  FK++F G+ +   +  T
Sbjct: 2   NTGEIRNKFLTFFEKKSHVIWPGDSLVPQGDATLLFTGAGMNQFKDMFLGKGRLNIKRAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R G    DL+NVGRT  HHTFFEMLGNFSFG YFK   I  AW+ L +E  L +
Sbjct: 62  TCQKCLRTG----DLENVGRTASHHTFFEMLGNFSFGDYFKRETIAWAWEFLVQELRLPE 117

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFF 177
            +L+++VY +D E++++W+K   +   KI     NDNFW     +    GPCGPCSEIF+
Sbjct: 118 EKLFVSVYKDDPESYEIWEKHIRILKSKIYSYGENDNFWPANAPAQGPNGPCGPCSEIFY 177

Query: 178 DQG--------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           DQG        EC P        + +R++EIWNLVF QF+++       LP  ++DTGMG
Sbjct: 178 DQGAGVGCGREECEPAC------DCDRFVEIWNLVFTQFDRKEDGRLEPLPNKNVDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LERMA V+Q    N+DID+F  +I++ E +T ++Y  +  N V  R I DH+++S F IA
Sbjct: 232 LERMARVMQGVPTNFDIDIFAPVIKSIEDITHLRYHDKKENAVCMRRIADHVKASIFCIA 291

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+LP NEGRGYV RR++RRA+     LG  E  +  L+P +   M   YP++ Q +  I
Sbjct: 292 DGVLPGNEGRGYVERRLLRRAIRDGAQLGLKECFLYKLVPIISDLMQDYYPDIKQRRENI 351

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
              ++SE+E+F +TL+ G V L  ++  + K++I  L G  AFKLYDT+G PLD+ + IL
Sbjct: 352 ARIIKSEEEKFLETLELGTVRLKELMDTMQKNKIKELPGKEAFKLYDTYGFPLDMTELIL 411

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G + +D       L+ QR +AR+ S   G          +KE    T F+GY+    
Sbjct: 412 KEHGFS-MDSAGVEVELKRQRMQARSSSSMTGQVFDAGFLGKIKEISKGTTFLGYE---- 466

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                   K  C+   I           AIVQ   ++E+A +G +V +V DQTPFY E+G
Sbjct: 467 --------KDSCRARII-----------AIVQGDYLIEKAEAGSEVSIVLDQTPFYGESG 507

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG    +G  + ITD  KK +   +H   + +GI+RT   +   ID   R  +  
Sbjct: 508 GQIGDTGILESEGSHICITDT-KKNDSFIIHIGKITKGIVRTGDMIDARIDTHRRGLIKR 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATH+LH  L  ++G H  Q GS ++PD LRFD  H   +T  E+  IED VN+ I +
Sbjct: 567 NHTATHVLHWVLRNVIGRHAEQAGSMVSPDRLRFDFHHFSSLTKEEINRIEDLVNEKIME 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N  V  +    ++A  +GA AL G KY +RVR+VS+     G  S  LCGGTH+++TGEI
Sbjct: 627 NALVSVKEQTLQEARNAGAVALFGEKYEERVRMVSI-----GDFSKELCGGTHINNTGEI 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IV ESS+ AGIRRIEAITG  A +    ++E ++ L   L   + ++  + +E+  
Sbjct: 682 GPFRIVGESSVAAGIRRIEAITGISALTRDREKEEIVQELCGILNACEEDLSSKTQELLN 741

Query: 766 EYRKL-QLIHAKRKLQL--NVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E +KL + +H +++ +L   ++ LS    +++ VN ++  I    + +++   D L K  
Sbjct: 742 EVKKLHKELHKQKQKELLEKIDSLSVTAKEVSGVNIITKRIDNASADDMRRTADMLMKSE 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +   + L G     +  V+I ++  L  R  +A  +++  AK++ GGGGGGRP MAQ+GG
Sbjct: 802 KETAVAL-GSVLNGRVIVIISLSTGLASRGLHAGSISKEVAKIV-GGGGGGRPEMAQAGG 859

Query: 880 PNGNKADQAI 889
               K D+A+
Sbjct: 860 QVVGKLDEAL 869


>gi|319400948|gb|EFV89167.1| alanyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 349/920 (37%), Positives = 521/920 (56%), Gaps = 79/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EA+++W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSD 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGNDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E V+G KY  +    V  +VI DH+R+ +F IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++      ++++ G  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSNQVIKGHDAFKLYDTYGFPIELTEELATQEK 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L+ +D+ +F Q +++QR RAR     + S+ + S         LK     +QF+GY+   
Sbjct: 414 LS-VDMSTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDDSQFVGYE--- 462

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T    S++  I+  GE V+ A +G+ +  +  +TPFYA +
Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHAEAGETIYFILRETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   + +TDV K   G  +H  IV+ G       +   ++ ++RR + 
Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I 
Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V  + M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T E
Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763
           I L  IVSES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++
Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQL 737

Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            +E + L     +R  ++      N+E+     I +V  ++  +   D K ++S MD  +
Sbjct: 738 QDEEKGLLKQLEQRNKEITSLKMGNIEE-QVELINNVKVLATEVEIPDPKAIRSTMDDFK 796

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+Q  II+LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ 
Sbjct: 797 SKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQG 854

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG    K  +A+  +  ++K
Sbjct: 855 GGTQPEKITEALRFIKDYIK 874


>gi|160880749|ref|YP_001559717.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|205829959|sp|A9KMW7|SYA1_CLOPH RecName: Full=Alanyl-tRNA synthetase 1; AltName: Full=Alanine--tRNA
           ligase 1; Short=AlaRS 1
 gi|160429415|gb|ABX42978.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 879

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 357/906 (39%), Positives = 516/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH  L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMYLDFFESKGHLKLNSFSLVPQNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLSGD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y ED+EAF +W K  G++ ++I R+   DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYLEDDEAFDIWNKEVGIAPERIFRMGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +R+IE+WN VF QF          L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGDPNCTVGCECDRFIEVWNNVFTQFNSDGNGNYEELENKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +DID  K +     ++   +Y  +    ++ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 TLFDIDTMKAIRDHVCKMANAEYKVDPKKDMSIRLITDHIRSVTFMTSDGIIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +  E    YPEL + K  I + L  E+E+F 
Sbjct: 301 VLRRLLRRAARHGRLLGIQGKFLAELSKTVIAESKDGYPELEEKKEYILKVLTIEEEKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   L  +  + LNG+ AFKLYDT+G PLD+ ++IL  +G + ID   
Sbjct: 361 KTIDQGLSILSEMEEALVSNGTKTLNGEDAFKLYDTYGFPLDLTKEILEEKGFS-IDEEG 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F +A++ QR  AR A ++    G    I+  +      + F+GYD  R S          
Sbjct: 420 FKKAMQVQRETARSARAVTNYMGADASIYDEIDPAI-TSNFVGYD--RTSH--------- 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +S +  +  + ++ +E V GQ   ++ D+TPFYA  GGQ  D G  +G
Sbjct: 468 ------------TSKISVLTTETDLTDEVVGGQTATIIVDETPFYATMGGQTADIGFIVG 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ D  K   G   H   V +G  +   ++ LTID Q R+ +  NHSATHLL  A
Sbjct: 516 KDAEFEVEDTIKLKGGRVGHLGTVTKGSFKVGETVTLTIDTQKRQAIGKNHSATHLLQKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV Q GS +T + LRFD TH   +T  E+  +E  VN+ IA+N+PVVT +M+ 
Sbjct: 576 LRNVLGSHVEQAGSFVTSERLRFDFTHFSALTKEEIAKVEAMVNEEIAKNVPVVTDVMSV 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           EDA  SGA AL G KY D VRVV++     G  S  LCGGTHV++TG I +  I+SE+ I
Sbjct: 636 EDAKKSGAMALFGEKYGDSVRVVTM-----GDFSKELCGGTHVANTGSITVFKILSEAGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEAIT      +    +E+L   A   K    ++V R+E + EE +     + K
Sbjct: 691 AAGVRRIEAITSNAVFEYYKSMEEELHEAAKVAKTEPASLVKRIESLQEELKTALSENEK 750

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L    L        ++  V  ++  +++ D   L+++ D L++K+   +I+L   S
Sbjct: 751 LKAKLANNSLGDVMNQVVEVKGVKLLASKVTDADMNGLRNLGDQLKEKLGECVILLASAS 810

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           ++K   + +     +    +A +L +  A VL GGGGGGRP+MAQ+GG N +  D AI  
Sbjct: 811 EDKVNLIAMATDGAMAKGAHAGNLIKEVA-VLVGGGGGGRPNMAQAGGKNPSGIDAAIEK 869

Query: 892 VASFLK 897
             S ++
Sbjct: 870 AVSVVE 875


>gi|310658795|ref|YP_003936516.1| alanyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825573|emb|CBH21611.1| alanyl-tRNA synthetase [Clostridium sticklandii]
          Length = 882

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 348/914 (38%), Positives = 537/914 (58%), Gaps = 62/914 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  +L FF+   H    S SL+P ND +L+  N+GM P KN F G E P  + + T
Sbjct: 6   VNEIREKYLSFFRSKDHYSRSSFSLVPENDKSLLLINAGMAPMKNYFMGLETPPNKRMAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK+ +L+  
Sbjct: 66  CQKCVRTG----DIENVGKTARHATFFEMLGNFSFGDYFKKEAIAWAWEFVTKDLELNPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGE- 181
            L++TVY ED+EAF +W+K   +  ++I+R+   DNFW +   TGPCGPCSEI+ D+G+ 
Sbjct: 122 DLWVTVYLEDDEAFDIWEKDINVPKERIVRLGKEDNFWEIGTGTGPCGPCSEIYIDRGKE 181

Query: 182 --CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             C  P   PG   + +R++E WNLVF QF +        LP  +IDTGMGLERMA ++Q
Sbjct: 182 FGCSDPDCKPGC--DCDRFLEFWNLVFTQFNKDEDGNYNPLPNPNIDTGMGLERMACIMQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              + +DID  K +     +++G +Y       V+ R+I DH R+ +FLI+DG+LP+NEG
Sbjct: 240 GVDSIFDIDTMKSIRDNVCELSGKEYGKSTETDVSIRLITDHSRAVTFLISDGVLPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     ++ L+  +    G AYP+L++ K  I++ L  E+E
Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKNNFLVKLMETVIENYGEAYPDLVEKKEYIKKILTVEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD+G+V+L   +  +  +  ++L+G+ AF+LYDT+G P+++  +I+   GL  +D
Sbjct: 360 KFSETLDQGMVILKEYMDKIKSESKDVLSGEDAFRLYDTYGFPIELTLEIVEEYGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              F   +++Q+ RAR+     G      T + + FS+++     +FIGY+ L  S  +K
Sbjct: 419 EDGFKAEMQKQKERARSARTDKGVEGWKETADTLTFSIEK----NEFIGYNELEASAQIK 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           +   ++     ID+ +                     GQ  E+VF++TPFYAE+GGQ+ D
Sbjct: 475 D---IIFDNQKIDILS--------------------EGQAGELVFEKTPFYAESGGQVAD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +    ++ DVQK   G+F+H   V  G  +      L +D + R+    NH+ T
Sbjct: 512 KGIVKSENFVAEVKDVQKSHNGLFIHRVEVVSGEAKLSDKCELVVDEKLRKSTQRNHTCT 571

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+H+ Q GS ++   LRFD TH +PITS +L  IE+ VN+ I +  PV 
Sbjct: 572 HLLHKALRQVLGAHIHQAGSLVSDTRLRFDFTHFEPITSEQLSQIENMVNEAIFKAYPVK 631

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +MN E+A  SGA AL   KY D VRVVSV     G  S+ LCGGTHVS++ +I +  I
Sbjct: 632 VEVMNIEEAKKSGAMALFDEKYEDNVRVVSV-----GEFSTELCGGTHVSNSSDIGMFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SES I +G+RRIEAITG     +L+ ++  L  + S +K ++ N+V ++ +  E+Y+  
Sbjct: 687 LSESGIASGVRRIEAITGSNVYQYLLEKEAVLDEIKSLVKSNEDNLVIKLSQTIEDYKTA 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q   +K K ++    ++        I  + ++     ++D + L++V + +  KI++ ++
Sbjct: 747 QKELSKLKSEIAKNQINEILEGAKDIDGIKYVYSSFEDLDDETLRNVAENVIDKIENSVV 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGN 883
           +L     E K S + +V++  L +   V   +   +V  L GGGGGG+P+MAQ+GG + +
Sbjct: 807 LLSSYF-ENKISFVCMVSKGALQK--GVHAGKFIKEVSSLTGGGGGGKPNMAQAGGKDIS 863

Query: 884 KADQAIAGVASFLK 897
           K  +A+    + LK
Sbjct: 864 KLGEAMKQSETILK 877


>gi|300854401|ref|YP_003779385.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300434516|gb|ADK14283.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 879

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 346/916 (37%), Positives = 534/916 (58%), Gaps = 66/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+K GH  +PS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNQIREMYLSFFEKKGHLRMPSFSLVPNNDKSLLLINAGMAPLKPYFTGLKVPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE  I  AW+  T    + + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEVIPWAWEFTTDVLKIPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y +D+EA+ +W K + +   +I R+   DNFW     GPCGPCSEI +D+GE  
Sbjct: 122 KLYVTIYLDDDEAYDIWVKKTDIDPSRIFRLGKEDNFWEHG-AGPCGPCSEIHYDRGE-- 178

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G +    E     + +R +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q
Sbjct: 179 -GKITTVDEFVKAGDSDRVVEFWNLVFTQFDKDEEGNYNKLSHPNIDTGMGLERMATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K + +++D    +++    + G++Y  N  + ++ R+I DH+RS +F+I+DGILP+NEG
Sbjct: 238 GKNSIFEVDTINSILKEVSNMAGIEYSKNEKSDMSMRIITDHVRSVTFMISDGILPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  E  +  L   +       YPEL + +  I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAAKHGKSLGIKEGFLYKLTEVVINNSCGNYPELKEKEEYIKKIIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L+  +S L   K+ +L G+ AFKLYDT+G P+++ Q+IL  +G+  +D
Sbjct: 358 RFDETIDSGMQILNDFISDLKSNKNTVLEGEKAFKLYDTYGFPIELTQEILEEKGMT-VD 416

Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  FNQ +++QR RAR+     + +G  +    KI F +      T F GYD L+ S   
Sbjct: 417 LDEFNQNMKDQRERARSARAETNYMGAENTVLNKIPFEIN-----TVFEGYDRLKSS--- 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S VK IV+  E V     G++  ++   TPFYAE GGQ+G
Sbjct: 469 --------------------SKVKLIVKDEEFVSVLNEGEEGVIITANTPFYAEMGGQVG 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +  + ++ D +K   G  +H   V  G +  E ++ L++D   R  +  NH+A
Sbjct: 509 DKGTVFSENFKGEVLDCKKNLAGKVLHFVKVISGSINLEDTIELSVDEDRRSNIRKNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LG  V Q+GS +    LRFD  H + ++  +L++IE+ VN+ I +  PV
Sbjct: 569 THLLDSALKQVLGEQVHQSGSYVDESRLRFDFNHFEAVSYEKLRNIENLVNESIMKVYPV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T IM+ E+A  SGA AL   KY D VRVVSV     G  S  LCGGTHVS++GEI L  
Sbjct: 629 KTTIMSLEEAKESGAIALFDNKYKDEVRVVSV-----GNFSKELCGGTHVSNSGEIGLFK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR--VEEIWEEY 767
           I SE+ I AGIRRIEA+TG+ A  ++  + + L+ ++S LK S+  +V +  ++    + 
Sbjct: 684 ITSETGIAAGIRRIEAVTGKMAAEYVNSKSDILREISSKLKCSEKEIVHKLDLQSSELKE 743

Query: 768 RKLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            + ++   K K+  + ED    S  KI  ++  + I+ +VD   L+ + D ++ K ++ +
Sbjct: 744 LEKEIEELKLKVAGSAEDDILKSVEKIGGIDLFTGILKDVDGNSLRELADKIRSKSENCV 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882
           ++L G S   K  ++ + T++ +   + +   ++  +V  + GGGGGGRP MAQ+GG   
Sbjct: 804 VLL-GSSIGGKVQLVAMATKEAVK--SGIHCGKIIKEVAAITGGGGGGRPDMAQAGGRLP 860

Query: 883 NKADQAIAGVASFLKK 898
           +K  +AI    + + K
Sbjct: 861 DKLQEAIGKSNTIITK 876


>gi|150390222|ref|YP_001320271.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149950084|gb|ABR48612.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 893

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 356/914 (38%), Positives = 542/914 (59%), Gaps = 64/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL+F+++  H +  S  L+P ND +L+  N+GM P KN F+G E P  + + T
Sbjct: 19  LNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRMAT 78

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLG+F+FG YFK  +IQ  W+  TK  ++ + 
Sbjct: 79  CQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMPED 134

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           +++ +VY+ED+EA+ +W+    +  ++I+R+   DNFW +   GPCGPCSE++FD+G+  
Sbjct: 135 KIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGDKY 193

Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C PG       + +R++E WN VF QF++       +LP  +IDTGMGLER+A 
Sbjct: 194 SCGHDDCKPGC------DCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVAC 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPA 293
           ++Q+  + +++D  KH++ +    T  +Y  +   N   R+I DHLRS +F+I DGILP+
Sbjct: 248 IMQDVDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPS 307

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA  + +LLG ++  +  L+  +    G AY EL++ K  I++ ++ 
Sbjct: 308 NEGRGYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQV 367

Query: 354 EDERFGKTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF +T+ +GL +L+  +  + GK E +LNG  AFKLYDT+G PLD+ ++IL  R + 
Sbjct: 368 EEDRFQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT 427

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            +D   F   +E+QR+RAR A S G   G  E  + +L +K   T F GY+ LR      
Sbjct: 428 -VDESEFESEMEKQRNRARKARSGGDTEGWKEDAFDAL-DKNIQTSFKGYETLRA----- 480

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            + KVL                 AI+++ + V    +G++V +V D+TPFY E+GGQ+GD
Sbjct: 481 -EGKVL-----------------AIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGD 522

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G    D    Q+ D  K+ +   +H  I + RGIL+   S+   +D + R     NH+A
Sbjct: 523 IGHIFKDEFEGQVLDT-KQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTA 581

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  I+G HV Q GS +TP+ LRFD +H + ++SA+L  +E  VN  I   L V
Sbjct: 582 THLLHKALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNV 641

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T   + E+A   GA AL G KY D VRVV       G +S  LCGGTHV ++ EI    
Sbjct: 642 DTVEASLEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFL 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-- 767
           I+SE+ + AG+RRIEA+TGQ A  H+  +   ++ + S LK     +  RVEE+ +E   
Sbjct: 697 ILSETGVAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKE 756

Query: 768 --RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             ++LQ + +K   Q   E L+    I   N + H   E   ++L+++ D+L++KI SG+
Sbjct: 757 KDKELQQLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I L G     KAS  +  T+D++++  ++ ++ R  AK+  GGGGGGRP MAQ+GG N  
Sbjct: 817 IAL-GAESNDKASFFVTATKDVVEKGVHSGNMIREVAKI-AGGGGGGRPDMAQAGGKNPE 874

Query: 884 KADQAIAGVASFLK 897
           K   A++ V   LK
Sbjct: 875 KIQSALSIVKGLLK 888


>gi|255349144|ref|ZP_05381151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503681|ref|ZP_05382071.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255507361|ref|ZP_05383000.1| alanyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525793|emb|CBJ15274.1| alanyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435369|gb|ADH17547.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296439086|gb|ADH21239.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 875

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 334/887 (37%), Positives = 492/887 (55%), Gaps = 55/887 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F KT
Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       ID+ +F + 
Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R ++    + +     F   +    ++FIGYD L    F             
Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ I++  EI      G +  ++   TPFYAE GGQ+GD+G    +    
Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCESGTF 515

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL   L
Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D ++
Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635

Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           S       G KY D VRVV   +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 636 SSEIKQFFGDKYGDIVRVVLAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771
           RRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L         Q
Sbjct: 690 RRIEATTGEDAENIARGQDMDLNEIATVIQSPKDQILIKIRSVMEEKKDLAKQVADLENQ 749

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  + K  L     SC KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850


>gi|256027953|ref|ZP_05441787.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289765898|ref|ZP_06525276.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717453|gb|EFD81465.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 867

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 345/894 (38%), Positives = 524/894 (58%), Gaps = 62/894 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +D+ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKIDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N+  +   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + +R E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVRIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGMQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYE-------KTEDEGK 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + EA  G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLS-----------------------LREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIH 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDDFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDTVRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V     +
Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGVEVNISHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSES 
Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSESG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773
           I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  + +L 
Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKELE 739

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830
             K+KL L     +   + ++     +++    K   +L++++D ++ + +  II+L   
Sbjct: 740 TLKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           S + K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K
Sbjct: 798 STQDKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEK 850


>gi|237744281|ref|ZP_04574762.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431510|gb|EEO41722.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 867

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 344/894 (38%), Positives = 524/894 (58%), Gaps = 62/894 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +D+ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKIDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N+  +   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLKNIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGMQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYE-------KTEDEGK 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + EA  G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLS-----------------------LREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDDFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLKVDIVRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V     +
Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSES 
Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSESG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773
           I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  + +L 
Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKTEADILKDIERKLKATNSNLIEKVEKTLETLKDTEKELE 739

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830
             K+KL L     +   + ++     +++    K   +L++++D ++ + +  II+L  I
Sbjct: 740 ALKQKLALFETKAAISGMEEIGGTKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLASI 799

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             + K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K
Sbjct: 800 --QDKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEK 850


>gi|294785718|ref|ZP_06751006.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294487432|gb|EFG34794.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 867

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 344/896 (38%), Positives = 529/896 (59%), Gaps = 66/896 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N+  +   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + E   G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IE+ VN+ I + + V     N
Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISYHN 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D+VRVV V        S+ LCGGTH+ + G+I L  I+SE  
Sbjct: 625 IEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           I AG+RRIEA TG  A  +L+ ++E   L  +   LK +  N+V +VE+  E  ++   +
Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828
           L + K+KL L         + ++N +  +I+    K   +L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             S + K +  + VT+ L+D+  A DL +  A++  GG GGGR   AQ+GG +  K
Sbjct: 798 --STQDKLAFAVGVTKTLIDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850


>gi|205830053|sp|A6TQZ4|SYA_ALKMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 356/914 (38%), Positives = 542/914 (59%), Gaps = 64/914 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL+F+++  H +  S  L+P ND +L+  N+GM P KN F+G E P  + + T
Sbjct: 6   LNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRMAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLG+F+FG YFK  +IQ  W+  TK  ++ + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           +++ +VY+ED+EA+ +W+    +  ++I+R+   DNFW +   GPCGPCSE++FD+G+  
Sbjct: 122 KIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGDKY 180

Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C PG       + +R++E WN VF QF++       +LP  +IDTGMGLER+A 
Sbjct: 181 SCGHDDCKPGC------DCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVAC 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPA 293
           ++Q+  + +++D  KH++ +    T  +Y  +   N   R+I DHLRS +F+I DGILP+
Sbjct: 235 IMQDVDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPS 294

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA  + +LLG ++  +  L+  +    G AY EL++ K  I++ ++ 
Sbjct: 295 NEGRGYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQV 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF +T+ +GL +L+  +  + GK E +LNG  AFKLYDT+G PLD+ ++IL  R + 
Sbjct: 355 EEDRFQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT 414

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            +D   F   +E+QR+RAR A S G   G  E  + +L +K   T F GY+ LR      
Sbjct: 415 -VDESEFESEMEKQRNRARKARSGGDTEGWKEDAFDAL-DKNIQTSFKGYETLRA----- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            + KVL                 AI+++ + V    +G++V +V D+TPFY E+GGQ+GD
Sbjct: 468 -EGKVL-----------------AIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G    D    Q+ D  K+ +   +H  I + RGIL+   S+   +D + R     NH+A
Sbjct: 510 IGHIFKDEFEGQVLDT-KQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  I+G HV Q GS +TP+ LRFD +H + ++SA+L  +E  VN  I   L V
Sbjct: 569 THLLHKALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T   + E+A   GA AL G KY D VRVV       G +S  LCGGTHV ++ EI    
Sbjct: 629 DTVEASLEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFL 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-- 767
           I+SE+ + AG+RRIEA+TGQ A  H+  +   ++ + S LK     +  RVEE+ +E   
Sbjct: 684 ILSETGVAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKE 743

Query: 768 --RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             ++LQ + +K   Q   E L+    I   N + H   E   ++L+++ D+L++KI SG+
Sbjct: 744 KDKELQQLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGV 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I L G     KAS  +  T+D++++  ++ ++ R  AK+  GGGGGGRP MAQ+GG N  
Sbjct: 804 IAL-GAESNDKASFFVTATKDVVEKGVHSGNMIREVAKI-AGGGGGGRPDMAQAGGKNPE 861

Query: 884 KADQAIAGVASFLK 897
           K   A++ V   LK
Sbjct: 862 KIQSALSIVKGLLK 875


>gi|166154091|ref|YP_001654209.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166154966|ref|YP_001653221.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335296|ref|ZP_07223540.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|205830022|sp|B0B8X5|SYA_CHLT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830023|sp|B0BAK4|SYA_CHLTB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|165930079|emb|CAP03562.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165930954|emb|CAP06516.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 875

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 334/887 (37%), Positives = 492/887 (55%), Gaps = 55/887 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETKTV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F KT
Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       ID+ +F + 
Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R ++    + +     F   +    ++FIGYD L    F             
Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ I++  EI      G +  ++   TPFYAE GGQ+GD+G    +    
Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCESGTF 515

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL   L
Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D ++
Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635

Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           S       G KY D VRVV   +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 636 SSEIKQFCGDKYGDIVRVVLAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771
           RRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L         Q
Sbjct: 690 RRIEATTGEDAENIARGQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  + K  L     SC KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850


>gi|34763053|ref|ZP_00144027.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887279|gb|EAA24376.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 867

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 345/896 (38%), Positives = 527/896 (58%), Gaps = 66/896 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N+  +   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + E   G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V     N
Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISYHN 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I+SE  
Sbjct: 625 IEEAKKLGAMMLFGDKYGDMVRVVDVP-----GFSTELCGGTHIDNIGKIGLFKIISEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           I AG+RRIEA TG  A  +L+ ++E   L  +   LK +  N+V +VE+  E  ++   +
Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828
           L + K+KL L         + ++N +  +I+    K   +L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             S + K +  + VT+ L D+  A DL +  A++  GG GGGR   AQ+GG +  K
Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850


>gi|153853058|ref|ZP_01994467.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814]
 gi|149753844|gb|EDM63775.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814]
          Length = 887

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 356/908 (39%), Positives = 521/908 (57%), Gaps = 52/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI   W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWTWEFLTEVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +D+EAF++W K  G+ A++I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSIYQDDDEAFEIWNKEIGIPAERIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 188

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A ++Q+  
Sbjct: 189 GCGQPGCTVGCECDRYMEIWNNVFTQFDNDGHNNYTELEQKNIDTGMGLERLACIVQDVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      + G++Y+   N   + RV+ DH+RS +F+I+DGILP+N GRGY
Sbjct: 249 SMFDIDTLKALRDHVCNMAGVEYQKDDNTDTSIRVLTDHIRSVTFMISDGILPSNSGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I   +  E+ +F 
Sbjct: 309 VLRRLLRRACRHGRLLGIKGAFLVKLAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 368

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K  + +L+G  AFKLYDT+G P+D+  +IL  +GL   D   
Sbjct: 369 KTIDQGLSILADMEEEMKKNGEAVLSGKNAFKLYDTYGFPIDLTSEILEEKGLT-YDEKG 427

Query: 418 FNQALEEQRSRARAHSLGLG--SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           F +A +EQR+++   + G    SG    ++  L  +  +++F+GY+ L            
Sbjct: 428 FEEAQKEQRAKSEG-TFGTHNYSGKDASVYDELDAEL-SSEFVGYNQLE----------- 474

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V A+  + E+V+    G K  ++  +TPFYA  GGQ  D G   
Sbjct: 475 ------------VESDVTAMTSETEVVDALTDGDKGTIIVAKTPFYATMGGQEADKGIIC 522

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     + DV K A G F H   V +G+++    + L +D +NR     NHSATHLL  
Sbjct: 523 TEDGEFVVEDVVKLAGGKFGHVGQVTKGMIKVGDKVTLKVDKENRALAENNHSATHLLQK 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS      LRFD TH   +T+ EL+ +ED VN+ I +NLPVV + M 
Sbjct: 583 ALRMVLGNHVEQAGSLNNAQRLRFDFTHFSAMTAEELQKVEDIVNEKIRENLPVVIKNMP 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  +GAAAL G KY D VRVVS+     G  S   CGGTHV +TG IM   I+SE+ 
Sbjct: 643 IEEAKKTGAAALFGEKYGDIVRVVSM-----GDFSIEFCGGTHVKNTGNIMAFKILSETG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+T +    +   Q++KL   A  LK +  N+  +V  +  E + L+    
Sbjct: 698 VAAGVRRIEALTSKGLLDYYSAQEKKLHETAKLLKATPENIEEKVSHLMNENKVLKGEVE 757

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L  + +        ++  V F++  +  VD   L+ + D L++K+  G+I+L  +
Sbjct: 758 SLKSKLAKDAMGDVMNQVEEVKGVKFLATSLEGVDMNGLRDLGDQLKEKLGEGVILLASV 817

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K S++   T+  + +  +A +L +  AK++ GGGGGGRP+MAQ+GG N    + A+
Sbjct: 818 N-DGKVSLMATATDGAMKQGAHAGNLIKAVAKLV-GGGGGGRPNMAQAGGKNPAGVEDAL 875

Query: 890 AGVASFLK 897
                 L+
Sbjct: 876 KAAKEALE 883


>gi|152991270|ref|YP_001356992.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|205830162|sp|A6Q576|SYA_NITSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151423131|dbj|BAF70635.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 850

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 355/900 (39%), Positives = 527/900 (58%), Gaps = 62/900 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL +F    H + PS+ L+P  DPTL+FTN+GMVPFK IFTG+        T+ Q 
Sbjct: 3   IRKEFLNYFASKAHTIYPSAPLVP-EDPTLLFTNAGMVPFKKIFTGEMPAEVPRATSCQT 61

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+  +L   +L+
Sbjct: 62  CIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPVEKLW 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIPG 185
           +TV++ D+EA K+W+K   +  D+I R    DNFW M +TGPCGPCSEIF+DQGE    G
Sbjct: 122 VTVHESDDEAEKIWQKF--VKKDRIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHFKG 179

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                  +G+R++EIWNLVFMQ+E+    E   LPK SIDTGMGLER+  + +   +NYD
Sbjct: 180 PEDYLGGDGDRFLEIWNLVFMQYERNEAGELLPLPKPSIDTGMGLERITAIKEGVLSNYD 239

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             LF  LI A   ++  KY      + RVI DH+R+ +FL++ G++ +NEGRGYVLRRI+
Sbjct: 240 SSLFMPLIDAISDLSKKKYIYKEGASFRVIADHIRAVTFLLSQGVMFSNEGRGYVLRRIL 299

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR + +  LLG  EP M  L   +   MG  Y  L +    ++E +R+E+ERF +T++ G
Sbjct: 300 RRGVRHGYLLGLKEPFMYRLADKVAEIMGGHYSYLYEKLSTVKEQIRAEEERFYQTIEAG 359

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           + L +  L+      I +GDVAFKLYDT+G PLD+ +D+L  +GL  +D   F   ++EQ
Sbjct: 360 MRLFEEELAKT--KTIFSGDVAFKLYDTYGFPLDLTEDMLREKGLR-LDKERFETLMQEQ 416

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           R RA+A   G G           KE  G   +F+GY+ L+                    
Sbjct: 417 RQRAKAAWKGSGDVALSG---DFKELLGLKNEFVGYEKLKA------------------- 454

Query: 485 TNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRL- 541
                +I+  ++ +  +  E    GQK  ++ ++TPFYAE+GGQ+GD G   + +G ++ 
Sbjct: 455 ----HTIITGLLDESFKKCESLKPGQKGWILLEETPFYAESGGQIGDRGEIRLYEGEKIA 510

Query: 542 QITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           ++ D +K  +  + +  AI E   ++ + ++   +D ++RR+++ +HSATH+LH AL  I
Sbjct: 511 KVLDTKKFFDLNMSLVEAIKE---VKKDEAVEAVVD-KSRREIAKHHSATHILHSALRKI 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  + LRFD +H KP+ + E++ IE+ VN++IAQ +      M  + A 
Sbjct: 567 LGEHVTQQGSLVEANRLRFDFSHPKPLNAQEIERIENFVNEVIAQGIEAKVEEMPIDKAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRV  VE+ D  V    LCGGTHV ++ EI   +I  ES + +G+
Sbjct: 627 EKGAMALFGEKYGDVVRV--VEFGDVSVE---LCGGTHVKNSAEIGSFFITKESGVSSGV 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G  A        E L   +   +V   +++  ++++ +E + L     K++++
Sbjct: 682 RRIEAVCGMSAVKLAKSWRESLVKASE--EVKNKDILLGIKKLKDEIKDL-----KQEIK 734

Query: 781 LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            N+  +S  ++A  ++N +  +I EVD+ ++K ++D L+   +   +ML     EK   V
Sbjct: 735 -NISSVSAKELASQEINGVRVVIDEVDAGDIKKIIDDLKNAHEKLAVMLFQKRGEK---V 790

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           LI      + +  A D  +  A V+ GGGGGGRP  AQ+GG N  K  +A      + K+
Sbjct: 791 LIAAGAKGV-KLKAGDWVKSVAPVV-GGGGGGRPDFAQAGGKNPEKIGEAKKAALEYAKE 848


>gi|256844995|ref|ZP_05550453.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256718554|gb|EEU32109.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 867

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 345/896 (38%), Positives = 527/896 (58%), Gaps = 66/896 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDKNSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N+  +   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + E   G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V     N
Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISYHN 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I+SE  
Sbjct: 625 IEEAKKLGAMMLFGDKYGDMVRVVDVP-----GFSTELCGGTHIDNIGKIGLFKIISEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           I AG+RRIEA TG  A  +L+ ++E   L  +   LK +  N+V +VE+  E  ++   +
Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828
           L + K+KL L         + ++N +  +I+    K   +L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             S + K +  + VT+ L D+  A DL +  A++  GG GGGR   AQ+GG +  K
Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850


>gi|289423561|ref|ZP_06425362.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156063|gb|EFD04727.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 878

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 352/915 (38%), Positives = 533/915 (58%), Gaps = 67/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  F EFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P  + ++T
Sbjct: 6   LNEIRKNFTEFFRSKGHYIAKSHSLVPSNDKSLLLINSGMAPLKNYFSGVETPPKERMST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+R G    D++NVG T RH TFFEM+GNFSFG YFK+ AI  AW+ +T+   L + 
Sbjct: 66  VQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKDAITWAWEFITQWLKLPEE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           ++++TVY+ D+EA+ LWK + G   ++I+R+  +DNFW +   GPCGPCSEI+FD+GE  
Sbjct: 122 KIWVTVYESDDEAYDLWKNMIGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGEKY 180

Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C PG       + +R++E WNLVF QF++Q       L   +IDTGMGLERMA 
Sbjct: 181 GCGCEDCKPGC------DCDRFLEFWNLVFTQFDRQEDGSYGDLENKNIDTGMGLERMAC 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILP 292
           V+Q+    +++D  + ++Q   ++ G  Y GN+  N    R+I DH+RS SF++ADGILP
Sbjct: 235 VMQDVDTIFEVDTIQEVLQNVCKIAGKTY-GNDPKNDKSIRIITDHIRSVSFMVADGILP 293

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA  + +LLG     +  L+  +    G AYPEL++ +  I++ + 
Sbjct: 294 SNEGRGYVLRRLLRRAARHGKLLGIEGGFLNDLVDVVIKTSGEAYPELVEKEAYIKKVIG 353

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E+F + L +GL +L          GK  I +G++AFKLYDT+G PLD+  +IL   G
Sbjct: 354 IEEEKFAEALHQGLEILKSYTEETKDAGKTHI-SGEMAFKLYDTYGFPLDLTMEILEDEG 412

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F   ++ Q+ RARA + G   G   K     + +  +++F GY      K +
Sbjct: 413 MT-VDEEGFEAEMQAQKDRARA-ARGNREGDAWKEDPLTRLEDASSEFDGY------KNL 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           K D KV                 KAIV   E+V+    G + E++ D T FY   GGQ+G
Sbjct: 465 KMDSKV-----------------KAIVADNELVDSIEEGCEAELILDTTTFYPNGGGQVG 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D    ++ D  K A     H   +  G L+    +  +++ + R   + NHSA
Sbjct: 508 DKGTIESDIGVFEVVDTIKGANSSIKHIGRLVSGSLKLGDLVATSVNKELRMDAARNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL T+LG HV+Q GS + PD LRFD TH + IT  +L  IE+ VND + +++P+
Sbjct: 568 THLLHKALKTVLGEHVNQAGSLVAPDRLRFDFTHFESITKDQLLEIEEMVNDFVLESMPI 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +MN   A   GA AL G KY + VRVV++     G  S  LCGGTH+ +T ++ L  
Sbjct: 628 TAEVMNINAAKEMGATALFGEKYGENVRVVTM-----GDCSIELCGGTHLDNTAQVGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-- 767
           IVSES + AG+RRIEAITG+     +   D  + S+   LK  + N+  R + I EE   
Sbjct: 683 IVSESGVAAGVRRIEAITGRSVYQSIKDTDRLVASVVDILKTREDNLFERAKTIVEENKA 742

Query: 768 --RKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             ++LQ I AK  ++ N + +  S  +I  VN +++    +D   L+   D L+ K++SG
Sbjct: 743 LEKELQAIKAKMSME-NADSVLDSKIEIKGVNLITNRYEGMDMDTLRQAADQLRDKLESG 801

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L  ++ + K +++   +++ +D+  +A ++ R  AK+  GG GGGRP+MAQ+G  + 
Sbjct: 802 VVVLANVT-DGKINIVATASKEAIDKGAHAGNIVREVAKI-AGGKGGGRPNMAQAGASDI 859

Query: 883 NKADQAIAGVASFLK 897
           +K D+A++     ++
Sbjct: 860 SKLDEALSAAKEIVE 874


>gi|57505123|ref|ZP_00371068.1| alanyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|305433060|ref|ZP_07402216.1| alanine--tRNA ligase [Campylobacter coli JV20]
 gi|57019098|gb|EAL55813.1| alanyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|304443761|gb|EFM36418.1| alanine--tRNA ligase [Campylobacter coli JV20]
          Length = 842

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 361/899 (40%), Positives = 522/899 (58%), Gaps = 68/899 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           +R+ +L FF+  GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+  +P     T+ Q
Sbjct: 3   VRSEYLNFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           Y+TV++ D+EAF+LW+K   +  ++I R    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHESDDEAFELWQK--HIQKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEYFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + + K +N+
Sbjct: 180 GEEDYMGGDGDRFLEIWNLVFMQYERSADGKLTPLPKPSIDTGMGLERVTAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I    ++ G  Y   +  + RVI DH+RSS FL+A G     EGRGYVLRRI
Sbjct: 240 DSSLFMPIIDEIAKLCGKTYIYESGASFRVIADHIRSSVFLLAQGTSFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG  +P M +L+  +C  MG  Y  L + K  I+E +  E+ERF  T++ 
Sbjct: 300 LRRALRHGYLLGLKKPFMYNLVDVVCKLMGEHYTYLNEKKDFIKEQICLEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L +    E+ +G+VAFKLYDT+G PLD+ QD+L  + L  +D   F + + E
Sbjct: 360 GIEIFNKELKN--TKEVFSGEVAFKLYDTYGFPLDLTQDMLREKNLV-VDEAKFEELMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++RA+A   G G       + +L EK+G   F+GY+            K  CQ   + L
Sbjct: 417 QKNRAKASWKGSGDKVASGDFKNLLEKFGENCFVGYE------------KTECQATVLAL 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            +     V ++   G             V+ D TPFYA +GGQ+ DTG  IG     ++ 
Sbjct: 465 LDEDFKEVSSLKGLG------------WVMLDNTPFYATSGGQIADTG-YIGTS---EVL 508

Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D QK      ++ ++V+    ++    ++  ID   R Q + +HSATHLLHHAL  ILGS
Sbjct: 509 DTQK---FFNLNLSLVKANEEIKLNDKIIAKIDTDKREQTARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  EDA  SG
Sbjct: 566 HISQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIISSSEAILENMPLEDAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSH---LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKL 779
           EA+  + A       M ++  LK       +S G     V+++  E  KL+  +    K 
Sbjct: 680 EAVVSRAALEFCKTFMNENLNLKEELKSNDLSLG-----VKKLKNEILKLKNELKNSNKS 734

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           QLN         +++N +   +  V+S ++K+++D  + K +   I+L+  +K+ K ++ 
Sbjct: 735 QLNS--------SNINGVQICVECVESGDIKTMIDEFKNKFEKAAILLIQ-TKDDKITLA 785

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             V    L    A +L +  A++L GG GGGR   A +GG + +K D+A+      ++K
Sbjct: 786 AGVKNCPL---KAGNLVKNIAQIL-GGNGGGRDDFATAGGKDISKIDEALKQALDLIQK 840


>gi|189485045|ref|YP_001955986.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|205830280|sp|B1GZ43|SYA_UNCTG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170287004|dbj|BAG13525.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 877

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 342/904 (37%), Positives = 516/904 (57%), Gaps = 46/904 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FF+ +G  ++PS SLIP  D TL+FT++GMV FK  F GQ K  +   T+ 
Sbjct: 6   SKIRAEFLGFFKNSGCAVVPSDSLIPAGDKTLLFTSAGMVQFKQHFLGQSKDSFTRATSC 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC R     +D+D VG T RH TFFEMLGNFSFG YFK+ A   AW+ LTK   L + +
Sbjct: 66  QKCFRT----SDIDQVGTTARHLTFFEMLGNFSFGDYFKKEAAAWAWEFLTKNMSLPKDK 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYIT+Y +D+E   +WK I+   A+KII++    NFW+M ETGPCGPCSEI  D G+   
Sbjct: 122 LYITIYKDDDEVAGIWKNIA--PANKIIKMDEKTNFWNMGETGPCGPCSEILIDLGQETG 179

Query: 185 GGLPGSSEEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P    E   +RY+EIWNLVF QF++Q       LP+ +IDTGMGLER++  +  + N
Sbjct: 180 CGSPACCPECNCDRYLEIWNLVFTQFDKQPDGSLKNLPRKNIDTGMGLERLSATVNGRKN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            +D DLF  +++ + ++  +K EG+NI   R+I DH R+ +FLI+DGILP+NEGRGYVLR
Sbjct: 240 VFDTDLFMPVMENAAEILKIKNEGSNISKLRMIADHSRAITFLISDGILPSNEGRGYVLR 299

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+   +  GY +P +  L+  +   M  AYPEL      I   +++E+E+F +TL
Sbjct: 300 RILRRALRQGKFYGYNKPYINELVSDVLKIMEGAYPELSSKLSNIRSIVKTEEEKFLETL 359

Query: 363 DRGLVLLDGVL-SHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           + G  +L  ++ S+  KD  I++G   FKLYDT+G P D+ +++    GL  ID   F  
Sbjct: 360 ESGSEILSSLINSYKSKDINIISGKDVFKLYDTYGFPHDLTKEMAFENGLE-IDEDKFK- 417

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             E+++++ ++     GSG  +  ++S L++K G T F GYD      +  E R      
Sbjct: 418 -FEQKKAQEKSRVAWCGSGERDITFYSILRKKTGDTVFTGYD-----NYASESR------ 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+++ G  + E  +G   E++   + FYA++GGQ  D G    +  
Sbjct: 466 ------------VLALIKDGSEISELKTGDNGEIILSHSSFYAQSGGQSDDKGKIANNSF 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +  + K A  +FVH   V +G+++   ++   ID + R+Q++ +H+A HLLH AL  
Sbjct: 514 ESIVEYIFKPAGNLFVHKVKVLKGLIKINDAVSTIIDIERRKQIARHHTAAHLLHKALRE 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
             G H++Q GS +  D  RFD TH   +   +L  IE  VN II  N  V    M    A
Sbjct: 574 AFGGHITQAGSLVARDYFRFDFTHFSALKKDDLIKIEKRVNSIIRLNSEVCIETMAIAKA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
             +GA AL G KY D VR V ++ E G G +S  LCGGTHVS TG+I +  I+SESS  A
Sbjct: 634 RNAGAMALFGEKYGDEVRTVLIKNESGDGNYSMELCGGTHVSRTGDIGIFKIISESSAAA 693

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G  A ++++ ++  +   +  L  S+  +V +  +   +Y+KL+      K
Sbjct: 694 GVRRIEAVAGIAAENYILDEEAVIIKTSKILNASKEELVNKAHKYTSDYKKLENEFKSLK 753

Query: 779 LQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             L   ++  +     KI  +NF+S I  + D K L+++ D L++K++S ++++V    E
Sbjct: 754 SSLISGEIDSYAKEVKKINGINFLSVIADKADIKALRTISDQLKEKLKSAVLLIVS-KNE 812

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +AS ++  T D + +  NA  +A+  A  +  G  GG+P  AQ G  + +  + A+   
Sbjct: 813 DRASFILSATADCVQKGINAGKIAKAFAASI-NGSAGGKPDFAQGGSKDLSNLNDAVKNA 871

Query: 893 ASFL 896
             ++
Sbjct: 872 HKYI 875


>gi|206896025|ref|YP_002246808.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738642|gb|ACI17720.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 876

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 342/897 (38%), Positives = 519/897 (57%), Gaps = 56/897 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ +L FF++ GH  LPSSSL+P +DPTLMFT++GMV FK  F GQ +P  + +TTVQK
Sbjct: 8   IRSVYLSFFEEKGHLRLPSSSLLP-DDPTLMFTSAGMVQFKPYFLGQAQPPAKRITTVQK 66

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R G    DL+NVG T+RHHTFFEMLGNFS G YFK+ AI  AW+L+T+ F L   RL+
Sbjct: 67  CLRTG----DLENVGHTSRHHTFFEMLGNFSIGDYFKKEAILWAWELVTQRFKLPPERLW 122

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECIPG 185
           +T+Y +D+E+F +W  + GL  ++I+R+   +NFW     TGPCGPCSEI +D GE  P 
Sbjct: 123 VTIYQDDDESFDIWHNLVGLPENRIVRMGKEENFWGPPGPTGPCGPCSEIHYDMGEEWPC 182

Query: 186 GLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             P  G + EGER+ E WNLVF Q+ Q        LP+ +IDTGMGLERMA ++Q K  N
Sbjct: 183 DDPSKGPAAEGERFREFWNLVFTQYYQDENGNLSDLPRKNIDTGMGLERMAAIMQGKPTN 242

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           ++ DLF+ +I+A  Q+TG KYE  N+V  RVI DH+R+ +F I DG +P+NEGRGYV+RR
Sbjct: 243 FETDLFQPIIEAIGQLTGKKYE-ENLVAFRVIADHIRALTFAITDGAVPSNEGRGYVIRR 301

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I RR++ Y   LG  EP + +++P +     + YPELI  + L  + ++ E+E F +TL 
Sbjct: 302 IARRSVRYGLQLGKEEPFLYNIVPVVVEHYKNWYPELIGGQDLSMKLIKQEEEAFLRTLS 361

Query: 364 RGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
                LD ++  + K  I  +  +  F+LYDT+GLPLDI+ D+L    L+  D    NQ 
Sbjct: 362 SSQRYLDELVQQMKKQGIKEVPAEEVFRLYDTYGLPLDIIDDVLQENNLS-TDKEKLNQI 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +E+ + ++RA   G  +  T+ I+  L      T+F GYD L  S               
Sbjct: 421 IEQYKEQSRASWKGGEAVLTDTIFTRLVGNI-KTEFTGYDQLEDS--------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  S+I+  +        E   G +  ++ + TPFYAE+GGQ  D G    +    
Sbjct: 465 -------STIIATVKDNSRT--ELHEGDEGAIIVEHTPFYAESGGQEADHGIITTETGTF 515

Query: 542 QITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           ++ DVQK   G + VH+  V  G+++      L +D + R+ +   H+ATHLLH AL  +
Sbjct: 516 RVDDVQKVLGGNVIVHYGQVTSGVIKEGQQAFLQVDIERRKAMQRAHTATHLLHAALRRV 575

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD  RFD +H + ++ A+++ +E  VN+ + +N  V     + ++A 
Sbjct: 576 LGDHVRQGGSKVGPDWFRFDFSHFESMSPAQIQEVERLVNEQVLENKEVNIFFTSLDEAK 635

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY + VRVV V        S  LCGGTH   TG+I L +I+SES+   GI
Sbjct: 636 KMGAMALFGEKYGETVRVVEVP-----DWSMELCGGTHAKRTGDIGLFHIISESASSQGI 690

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--------LQL 772
           RRIEAITG++A  HL   ++ +K +A  L  S+  VV +++++ ++ ++        ++ 
Sbjct: 691 RRIEAITGKKALEHLWNLEKLVKDVAEELDTSKDMVVQKLQKLNQDLKEKDKEIKHLIER 750

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +H     +L  +     +I  + F++ +    D   L   +DA+ +      +  +G   
Sbjct: 751 VHTAEGKELFTK---AEEINGIKFINAVFPPRDPSALIIAVDAM-RSFNKPFVAALGTLN 806

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +K  +++  + D+ ++ N  ++  ++A  + GG GGGRP + Q+GG + ++   A+
Sbjct: 807 NEKPVLVLAASPDVAEKVNLREVVNMAASYI-GGKGGGRPTLVQAGGTDASRLSVAV 862


>gi|331002247|ref|ZP_08325766.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330411341|gb|EGG90757.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 885

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 354/893 (39%), Positives = 524/893 (58%), Gaps = 54/893 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FL+FF++ GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + V T
Sbjct: 12  VNRIRKKFLDFFEEKGHLSMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVCT 71

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 72  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLDAN 127

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF++W K  G+ A++I +    DNFW   E GPCGPCSE+++D+GE  
Sbjct: 128 RLYPSVYLEDDEAFEIWNKEIGIPAERIFKFGKEDNFWEHGE-GPCGPCSEVYYDRGEKY 186

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   + +RY+E+WN VF QF    K     L + +IDTGMGLER+A  LQ+  
Sbjct: 187 GCGKPSCTVGCDCDRYMEVWNNVFSQFNSDGKGNYTELVQKNIDTGMGLERLAVALQDVE 246

Query: 242 NNYDIDLFKHLIQ--ASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D  K L+   A+   T  K +    ++ R+I DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 247 SIFEVDTIKSLLDRVAALAKTSYKEDAKKDISLRLITDHIRSCTFMISDGIMPSNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG  +  +  L   +       YPEL + K +I + L  E+ +F 
Sbjct: 307 VLRRLLRRAARHGRMLGIKDTFLASLANTVIELSKDGYPELEEKKEMILKVLTEEENKFD 366

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +  +L K  +++++G+ AF+LYDT+G PLD+ ++I+  +G   +D   
Sbjct: 367 KTIDQGLSILSEIEENLTKSGEKVISGEDAFRLYDTYGFPLDLTKEIIEEKGFT-VDEAG 425

Query: 418 FNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           FN+A+E QR++ARA       +G+  T  I+ SL  K  +  F GYD L           
Sbjct: 426 FNKAMEAQRNQARAARKATNYMGADVT--IYQSLDPKLTSV-FEGYDSL----------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                    L  G    + A+  + EIVE    G    ++ D+T FYA  GGQ  D G  
Sbjct: 472 ---------LDTGK---ITALTTEDEIVEAIAEGDHGTIILDKTSFYATMGGQNADIGLI 519

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D     + DV K +     H   V +G+ +   ++   +D  NR++ + NHSATHLLH
Sbjct: 520 KKDDAVFNVVDVIKLSGDKIGHVGFVTKGMFKLGDTVETVVDADNRKKTAANHSATHLLH 579

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  D LRFD TH K +T  E+ ++E+ VN  I + LPVVT +M
Sbjct: 580 KALREVLGNHVEQAGSYVAADRLRFDFTHFKSLTKEEIANVEEIVNAEINKALPVVTDVM 639

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N EDA  SGA AL G KY   VRVVS+     G  S  LCGGTHV +T +I L  ++SE+
Sbjct: 640 NVEDAKKSGAMALFGEKYRGDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKVLSEN 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG+         + +++ +A  LK  +  ++ + E + +E + L+  +
Sbjct: 695 GIAAGVRRIEALTGEGVIEFYQDIESRMQKMAELLKTGEAELITKAESLLDEMKTLKSEN 754

Query: 775 AKRKLQLNVEDL--SCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L  E L  S   I  +N   F++  +S V+  EL+++ D L+  +  G+++L  
Sbjct: 755 EKLKAKLASEALGDSAENIETINGVKFIAMQVSGVEMNELRNLGDKLKNDVDDGMVVLAS 814

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              + K ++L +  ++ L    +A ++ +  A ++ GGGGGGRP++AQ+GG N
Sbjct: 815 -DVDGKVNLLCMAGDNALKAGAHAGNIIKAIATLV-GGGGGGRPNIAQAGGKN 865


>gi|322434171|ref|YP_004216383.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321161898|gb|ADW67603.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 941

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 357/964 (37%), Positives = 526/964 (54%), Gaps = 120/964 (12%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FF+   H  + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y    + 
Sbjct: 7   SQIREDFLRFFEGKAHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAEKRDYSRAASS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT    F +D+
Sbjct: 67  QKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKKDAIAYAWELLTSAAWFAIDK 126

Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +LY+T+++       DEEA++ W ++ G+ A++I  +   DNFW+M +TGPCGPCSEI+
Sbjct: 127 EKLYVTIFEGDEKVPRDEEAYQFWLEV-GVPAERIFELGAKDNFWAMGDTGPCGPCSEIY 185

Query: 177 FD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D        G  +P G     E+ +RY+EIWNLVFMQFE+ +      LPK SIDTGMG
Sbjct: 186 YDLGLAASESGADVPFG-----EDDQRYMEIWNLVFMQFERASDGTLTPLPKPSIDTGMG 240

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDH 278
           LER++ VLQ   +NYD DLF  LI+ + ++T      N  + H           R+I DH
Sbjct: 241 LERVSCVLQGVMSNYDTDLFIPLIKRAAELTLKPTSENPDMGHPVGDEKGAASLRIIADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R+++FLIADG+ PANEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EM  AYP
Sbjct: 301 ARAATFLIADGVQPANEGRGYVLRKILRRGIRHGRLLGQEQPFMFEMVKAVRDEMKVAYP 360

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------------------- 376
           EL++    + + + +E+E+F + +++ +  LD  L  +                      
Sbjct: 361 ELVEHAERVSKVVLAEEEQFARVIEKAMNELDRTLDAIKQLPSVLDRWNKTPESAPDYKE 420

Query: 377 ----------------GKDE--------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
                            K+E        +  G  AF  ++T+GLP+D M+D     G+  
Sbjct: 421 AEAAFWVTFELVHRTVNKNEARPKSRHGMFPGRTAFFFFETYGLPIDFMEDAARDAGIE- 479

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A  E++ RARA   G    T   ++  L +    T+F GY  LR        
Sbjct: 480 LDRAEFEKAKIEEQERARASWKGGSQKTASPVYRELAK----TEFEGYSALR-------- 527

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +G   I  A+V+ G  V     G++ EVV D T FYA++GGQ+GD G
Sbjct: 528 ------------VDGARVI--ALVKDGVGVHVLSPGEEGEVVLDATSFYADSGGQVGDVG 573

Query: 533 ---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHS 588
               A    +  ++    K  +G+F H  I +  I +  E+  V  ++ + R     NH+
Sbjct: 574 WLYAADHTTVLAEVRGANKPVQGVFAHKVIAKVAIAVGDEVDTV--VNGEVRAATMRNHT 631

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLLH AL  +LG HV Q GS +  D LRFD +H   +   EL+ IE  VN  + +N P
Sbjct: 632 GTHLLHAALREVLGKHVKQAGSLVNRDRLRFDFSHFTGVAEEELREIETIVNAQVLKNTP 691

Query: 649 VVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           V T +    D   +  GA AL G KY D+VRVV +     G  S+ LCGGTH  +TGEI 
Sbjct: 692 VETLVDVPIDVAVNDYGAMALFGEKYGDKVRVVRI-----GEFSTELCGGTHTLATGEIG 746

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           ++ +V ESS+ +G+RR+EAI+G  A        E  + +       +  +    EEI + 
Sbjct: 747 VIKLVGESSVASGVRRLEAISGTGALDEFRRGFEVSRVVPGGAAGLRDRLASDEEEIKKL 806

Query: 767 YRKLQLIHAKRKLQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            R+L  +  K       +  +   ++  V  ++  +  VD  +++ ++D L+ K+ SG++
Sbjct: 807 RRELDGLRLKAAQAATADAAAGAIEVKGVKVLAKRLDGVDKAQMRELVDQLRGKLGSGVV 866

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L   + E K ++++ VT+DL  +  A  +  L A ++ GG GGGRP +A++GG + ++ 
Sbjct: 867 VLGAATAEGKVALIVGVTKDLTGKVQAGKIVGLLAALV-GGKGGGRPDLAEAGGSDVSQL 925

Query: 886 DQAI 889
           D A+
Sbjct: 926 DAAL 929


>gi|172058083|ref|YP_001814543.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|205830090|sp|B1YJE5|SYA_EXIS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171990604|gb|ACB61526.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 880

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 357/910 (39%), Positives = 534/910 (58%), Gaps = 59/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FFQ  GH + PS+SL+P  DPTL++ NSG+   K  F G+  P    +   
Sbjct: 10  AQIRQMYLDFFQSKGHAIEPSASLVPIEDPTLLWINSGVATLKKYFDGRVIPQNPRIVNA 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI+  W+LLT +  + LD 
Sbjct: 70  QKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFREDAIKWGWELLTSDEWYGLDP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +T++ ED+ A ++W ++ G+ A++II +   DNFW + E GP GP +EIFFD+G  
Sbjct: 126 DRLSVTIHPEDDAARQIWLEL-GVPAERIIPL--EDNFWEIGE-GPSGPNTEIFFDRGPA 181

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P  SE     E ERY+EIWN+VF Q+          LP+ +IDTGMGLERMA+V+
Sbjct: 182 F-GDDPNDSELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASVM 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   N+D DLF  +I  +E+++G +Y  +    V  +VI DH+R+ +F I DG LP+NE
Sbjct: 241 QDVPTNFDTDLFMPIIHKTEEISGKRYREDTKLDVAFKVIADHIRTVAFAIGDGALPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA++LG   P M  L+  + + M   YP++ +    I+  +++E+
Sbjct: 301 GRGYVLRRLLRRAVRYAKMLGIERPFMYELVDTVGSVMVDFYPQVPEKADFIKRVIKNEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL  GL +L+ V        + I++G+ AF+LYDT+G PL++  +      ++ +
Sbjct: 361 ERFHETLHDGLAILNTVAQAAKNNGEHIISGEDAFRLYDTYGFPLELTVEYAEDHQMS-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A++EQR RARA       G+ ++    L      +QF+GY  L        D 
Sbjct: 420 DEEGFKRAMDEQRKRARAARED--GGSMQQQSEVLATLTVPSQFVGYTDLEA------DA 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K++                 A++  GE V E  +G++ +++ D TPFYAE+GG++ D+G 
Sbjct: 472 KII-----------------ALLHDGERVTEVAAGEEAQLLLDVTPFYAESGGEVADSGT 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G    L + DVQK   G  +H  +V  GI   + S+   ++  +R+ ++ NH+ATHLL
Sbjct: 515 ITGPDFVLDVKDVQKAPNGQNLHTVVVRTGIALADASVHAAVEASSRQAITKNHTATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG+HV+Q GS ++ + LRFD +H   +T+ EL +IE +VN  I  +L V    
Sbjct: 575 HKALKDTLGTHVNQAGSLVSAERLRFDFSHFGAVTAEELATIEQDVNQAIWASLAVEIEE 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN  DA A GA AL G KY + VRVVS      G +S  LCGG HV +T EI L  IVSE
Sbjct: 635 MNIADAKAKGAMALFGEKYGETVRVVS-----AGTYSIELCGGIHVRNTAEIGLFKIVSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG RRIEA+TG  A   + G  + L+  A  LK     V GR+E +  + R+ +  
Sbjct: 690 SGIGAGTRRIEAVTGAGAYHVMNGHLQTLEQAARVLKTKTTEVPGRIEALQVQLRETERA 749

Query: 774 HAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           H   + +L N+E  S      +I  V  ++  +   D   L+ +MD L+  + S II+L 
Sbjct: 750 HESLQAKLANIEAASLKDDVEQINGVQVLAKQVDVSDMDALRGMMDELKSSLGSAIIVL- 808

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G ++  K +++  V++DL+D+ ++A  L +  A    GGGGGGRP MAQ+GG +  K ++
Sbjct: 809 GSAQGDKVNLVASVSKDLIDQGYHAGKLIKEVATRC-GGGGGGRPDMAQAGGKDPAKLNE 867

Query: 888 AIAGVASFLK 897
           A+A  + +++
Sbjct: 868 ALAFTSHYVQ 877


>gi|283470895|emb|CAQ50106.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
          Length = 877

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 8   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E    ++ 
Sbjct: 68  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMGMEP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875


>gi|220906096|ref|YP_002481407.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862707|gb|ACL43046.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 889

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 356/911 (39%), Positives = 533/911 (58%), Gaps = 78/911 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF   GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ++      TT 
Sbjct: 19  AEIRQRFLDFFAARGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQEAEVPRATTS 77

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR    +ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T+ + L   R
Sbjct: 78  QKCVR----NNDIENVGRTARHHTFFEMLGNFSFGDYFKPDAIAWAWELVTEVYHLPADR 133

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ +D+EAF++W +  GL   +I R+  + NFW+   TGPCGPCSEI+FD      
Sbjct: 134 LVVSVFQDDDEAFEIWNQKIGLPPQRIRRMGEDSNFWAAGPTGPCGPCSEIYFD------ 187

Query: 185 GGLPGSSEEGE---------RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                  E GE         R++E++NLVFMQ+ +  +     L   +IDTGMGLERMA 
Sbjct: 188 ----FHPERGEQNIDLDDDSRFLELYNLVFMQYNRDAEGNLSPLKNKNIDTGMGLERMAQ 243

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILP 292
           VLQ   NNY+ DL   +IQ + ++  + Y     +  ++ +VI DHLR+   +IADGI  
Sbjct: 244 VLQGVPNNYETDLIFPIIQKAAEIADLDYSKSTDSTKISLKVIGDHLRAVMHMIADGITA 303

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RR + + RL+G  +P    ++        +AYP +      I+  L+
Sbjct: 304 SNVGRGYVLRRLIRRIVRHGRLIGIDKPFTAEVVETAIELAEAAYPNVRLKGDSIKAELQ 363

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            E+E F KTLDRG  LL  ++S +    GK +I +G  AF LYDT+G PL++ Q+I   +
Sbjct: 364 REEESFLKTLDRGEKLLADIISRVQSKPGKQQI-SGQDAFTLYDTYGFPLELTQEIAAEQ 422

Query: 409 GLAGIDIISFNQALEEQRSRAR-AH-SLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           GL  +D+  F   +E+QR RAR AH ++ L   GT +K    L E    T+F+GY     
Sbjct: 423 GLT-VDLEGFEAEMEQQRQRARDAHETIDLTVQGTLDK----LAEHIHTTEFLGY----- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           S+F                     SIV A++ +G+ V    +G  V++V DQTPFYAE+G
Sbjct: 473 SQFSS------------------PSIVTALLVEGQTVTTVEAGTTVQIVLDQTPFYAESG 514

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G   GD + ++I DVQK++ GIF+H+  VERG ++    +   ID   RR++  
Sbjct: 515 GQIGDRGYLSGDTLLVRIEDVQKES-GIFIHYGRVERGSVQVNDRVTAQIDLSCRRRVQA 573

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHLL  AL  ++  ++SQ GS ++ D LRFD    +P+T+AEL++IED +N  IA+
Sbjct: 574 HHTATHLLQSALKKLVDDNISQAGSLVSFDRLRFDFNCPRPVTAAELQAIEDQINTWIAE 633

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P  T ++   +A A GA A+ G KY   VRV+ V     GV S  LCGGTHVS+T EI
Sbjct: 634 AHPAQTSVLPIAEAKAKGAIAMFGEKYGSEVRVLDV----AGV-SMELCGGTHVSNTAEI 688

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I++E+ + +GIRRIEA+ G     +L  ++  ++ L+   KV    V  RV  +  
Sbjct: 689 GLFKIIAETGVASGIRRIEAVAGPAVLEYLNLRERVVRDLSDRFKVKPEEVPDRVTALQT 748

Query: 766 EYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKI 820
           E +  + QL   K +L L   D    ++  +     ++++   VD++ LK+  + L +K+
Sbjct: 749 ELKTTQKQLAELKNELALAKSDSLLAQVEAIGSFKVLVAQLEGVDAEALKTAAERLLQKL 808

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878
             G ++L  + + +K +++   + +   +   +   +   ++  L GG GGGRP++AQ+G
Sbjct: 809 APGAVVLASVPELEKVNLVAAFSSEAQQK--NLHAGKFIGEIAQLCGGKGGGRPNLAQAG 866

Query: 879 GPNGNKADQAI 889
           G +  K  +AI
Sbjct: 867 GRDAAKLPEAI 877


>gi|288819149|ref|YP_003433497.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788549|dbj|BAI70296.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752733|gb|ADO46216.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 871

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 359/900 (39%), Positives = 530/900 (58%), Gaps = 55/900 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL FF+K GH  + S+ L+P +DPTL+F N+GMVPFKN+F G EK  Y  
Sbjct: 1   MFSTDEIRELFLSFFEKKGHVRVRSAPLVPESDPTLLFVNAGMVPFKNVFLGIEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+R  GKHNDL++VG T+RHHTFFEMLGNFSFG YFK++AI+ AW+ +T+   L
Sbjct: 61  AVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMLGNFSFGDYFKKQAIEYAWEFITQYLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LYITV++EDEE +++W+   GL   +I +    DNFW M +TGPCGP SEI FD+G
Sbjct: 121 PEDKLYITVFEEDEETYRIWRDDIGLEEGRIWKRGEEDNFWQMGDTGPCGPSSEIHFDKG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E          EEGERY+E+WNLVFMQ+ +  K     LPK +IDTGMGLER+A+VLQ+ 
Sbjct: 181 E---------GEEGERYLEVWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERIASVLQKT 231

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGR 297
             NY+ID+ + L+   E+++  +Y G +    V  RVI DHLR+ +F I+DG+LP+N GR
Sbjct: 232 KTNYEIDIIRPLVAFGEELSQKRY-GESFEVDVALRVIADHLRAITFAISDGVLPSNVGR 290

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RRI+RRA+ YA  LG  EP +   +  +   M  AYPEL  +   ++  ++ E+E+
Sbjct: 291 GYVIRRILRRALRYAYKLGVQEPFLYRGIDLVVDIMKRAYPELETSIGFVKSVVKGEEEK 350

Query: 358 FGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F  TL   + +++ ++      G+  I +G   F LYDT+G PLD+++DI   +GL  +D
Sbjct: 351 FINTLKNAMPVVEEIIHKTLEEGRSSI-SGAQVFTLYDTYGFPLDMLEDIAREKGLY-VD 408

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F + +E QR +AR H   + S   + I+  LKE    +QF+GYD     ++  E + 
Sbjct: 409 MKGFEEQMELQREKARKH-FKITSKEVKPIYAHLKELGKTSQFVGYD-----QYQAETK- 461

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI++ G++V E   G++ E+V ++TPFYAE GGQ+GD G  
Sbjct: 462 -----------------VIAIIKDGQMVSELKEGEEGELVLEKTPFYAERGGQVGDKGFI 504

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G    + D Q   EG+  H   + +G L+    +   ID + R  +  NH+ATHLLH
Sbjct: 505 RGEGAYFMVEDTQSPVEGVITHIGKLIKGSLKVMDQVHAIIDRERREDIRRNHTATHLLH 564

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  +LG HV Q GS ++   LRFD TH + +    L  IE+ VN+ I QN  V     
Sbjct: 565 AVLRHVLGDHVRQAGSLVSDQYLRFDFTHYEALDWDRLSRIEELVNEHIRQNYEVSVEET 624

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   AI  GA A+   KY+DRVRV++V     G  S  LCGGTHV  TG+I    IVSES
Sbjct: 625 DYTKAIKEGAIAIFEEKYSDRVRVITV-----GEVSKELCGGTHVRRTGDIGYFKIVSES 679

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQ 771
           S+ AG+RRI A TG+ A      +   L+ L+  L V Q ++   + R+E   +E  K +
Sbjct: 680 SVGAGVRRIVAKTGRWAVEDAFREHRMLQELSISLGVKQEDIPDAIQRLERQLKEKEK-E 738

Query: 772 LIHAKRKL--QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +   K  L  Q+  + L    I  +        ++D+++L++  D ++   ++ ++  + 
Sbjct: 739 VARLKELLLEQMVQKQLKEELINGIRLYWGFFEDIDTEDLRNTADRIRSSSENCVVFFI- 797

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             K ++ S L+ ++++L+ + +A ++ +   KVL GGGGGGR  +AQ GG N     +AI
Sbjct: 798 TKKGERLSTLLALSKNLVPKLSAKEMIKEVGKVL-GGGGGGREDLAQGGGTNLQAVGKAI 856


>gi|323439035|gb|EGA96767.1| alanyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442822|gb|EGB00447.1| alanyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 877

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 8   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 68  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  + +  +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKVTTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875


>gi|289523056|ref|ZP_06439910.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503599|gb|EFD24763.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 880

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 348/902 (38%), Positives = 532/902 (58%), Gaps = 48/902 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL +F++  H+  PS SLIP +DPTL+FT +GMVPFK  F G +KP     TT QK
Sbjct: 9   LRELFLSYFEQKEHKRFPSFSLIP-DDPTLLFTIAGMVPFKPYFLGLKKPEVLRATTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT+RHHTFFEMLGNFSFG YFKERAI  AW+ LTK   LD  R+Y
Sbjct: 68  CLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKERAIPWAWEFLTKVIGLDPERMY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y +D+EAF++W K+ GL   KI+R+   DNFW+    GPCGPCSE+ +DQG     G
Sbjct: 124 ATIYLDDDEAFEIWNKVVGLPESKIVRMGEKDNFWAAGPIGPCGPCSELIYDQGPAFSCG 183

Query: 187 LPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P      + +RY+E+WNLVFMQ+ +  +     LPK +IDTGMGLER+A+++Q   +++
Sbjct: 184 KPDCFVGCDCDRYLEVWNLVFMQYNRDEEGNLTPLPKKNIDTGMGLERLASIVQGARSDF 243

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           + DLF  LI+   +++G++Y  +   +   RVI DHLR+ +F+IADG+LP+NEGRGYVLR
Sbjct: 244 ETDLFLPLIEKVSRLSGVEYAADKRFDTAMRVIADHLRALAFMIADGVLPSNEGRGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA  Y R+LG   P ++ L+P L   M   Y EL++ +  IE  +  E++RF +TL
Sbjct: 304 RLLRRASRYGRVLGLDRPFLIELMPELLEIMADHYKELVEYRSTIESVINLEEKRFSRTL 363

Query: 363 DRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           D+G  LL+  +S + +    +L+G+ AF LYDT+G PL++ ++I   +G+  +D   F +
Sbjct: 364 DQGSALLEEEISRVIRSGSSVLSGETAFTLYDTYGFPLELTEEICQEQGIE-VDREEFER 422

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR  AR  S  L S   +++  +L  K+G T+F+GY+                   
Sbjct: 423 CMERQREMARTASKQLASMAKKEVHSTLLAKFGPTKFVGYE------------------- 463

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               ++   S V AI++    VEEA  G++VE++  +TPFYAE GGQ+GD G       +
Sbjct: 464 ----SDEAESKVLAILKDSREVEEAHEGEEVEILLAETPFYAEKGGQVGDKGWIETSTGK 519

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++ D     + +  H   V+ G +  +      +D   R  +  +H++TH++H AL+ +
Sbjct: 520 LEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDLSRRNAIRRHHTSTHIIHEALTRV 579

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H+ Q GS ++P+ LRFD TH   I+  ++  IE   N++I  N+ +     + E+A 
Sbjct: 580 LGPHIRQAGSYVSPNYLRFDFTHFDAISRDDIVKIEQIANEVIQANIKLNIFETSMEEAK 639

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA A    KY DRVRV+ +       + + LCGG HV++TG+I L  IV E SI +G+
Sbjct: 640 KIGAKAFFDEKYGDRVRVIQIP-----GYCAELCGGLHVNATGDIGLTKIVKEESIGSGL 694

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRI A+ G  A SH     + ++ L     V  G++  +  ++++E + L  +L  +  K
Sbjct: 695 RRITALAGMAAVSHYQELFDLVEDLTLISGVEAGSLKEKFTDVFQEIKNLKTELQRSNLK 754

Query: 779 LQLNVED--LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L L+  D  LS  +I +    ++    ++D+  L+ V D L+K ++  +++L   S E K
Sbjct: 755 LALSQCDKILSQRQIVNGFTLLTGKFEDLDADILRQVGDHLKKGLKKVLLVLGS-SFEGK 813

Query: 836 ASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             ++ +  ED + D  +A       AK++  GGGGGRP++AQ+GG    K + A+  V  
Sbjct: 814 VVLVAMADEDAVRDGIHAGKFINRVAKIV-DGGGGGRPNVAQAGGKKVEKLEDALNAVPR 872

Query: 895 FL 896
            L
Sbjct: 873 IL 874


>gi|196250079|ref|ZP_03148773.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210263|gb|EDY05028.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 878

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 365/911 (40%), Positives = 531/911 (58%), Gaps = 60/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG LP+NE
Sbjct: 239 QDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     G++ +
Sbjct: 359 ERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS-V 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + +E QR RARA    + S   +  +   +K++   ++F+GYD L         
Sbjct: 418 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDIKDE---SRFVGYDELV-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+ D G
Sbjct: 467 ---------------VSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+ATHL
Sbjct: 512 VFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++PV   
Sbjct: 572 LHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDIF 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IVS
Sbjct: 632 YKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R+LQ 
Sbjct: 687 ESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQR 746

Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   A R   +  E L+    ++  V  ++  +   D  +L+++ D L++K+ + +I+L
Sbjct: 747 ENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + +  K  ++  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG + NK  
Sbjct: 807 AAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKDANKVG 864

Query: 887 QAIAGVASFLK 897
           +A+  V +++K
Sbjct: 865 EALDYVETWVK 875


>gi|257460412|ref|ZP_05625513.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257441743|gb|EEV16885.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 847

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 359/901 (39%), Positives = 526/901 (58%), Gaps = 69/901 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR+ +L FF   GH+++PS+ L+P +D +L+FTN+GMVPFK+IFTG   +P     T+ Q
Sbjct: 3   IRSEYLNFFASKGHQIIPSAPLVP-DDDSLLFTNAGMVPFKSIFTGAVPRPTPPIRTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + +L
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKEQAIAYAWEFITEILKLPKDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---C 182
           Y+TV+++D++A++ W +   ++ ++I R   +DNFW+M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHEKDDKAYEFWAR--HIARERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEHFH 179

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            P    G   +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + + K +
Sbjct: 180 SPEDYMGG--DGDRFLEIWNLVFMQYERSKDGKLSPLPKPSIDTGMGLERVTAIKEGKFS 237

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYD  LF  LI    ++ G  Y   +  ++RVI DH+RS  FL+A G     EGRGYVLR
Sbjct: 238 NYDSSLFMPLIDEVAKLCGRPYVYESGASYRVIADHIRSVVFLLAQGTNFNREGRGYVLR 297

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E ++ E+ERF  TL
Sbjct: 298 RILRRAVRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKEAVKEQIKLEEERFFATL 357

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
             G+ L +  L+     EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F+  +
Sbjct: 358 ANGIELFNEELAR--TKEIFSGEVAFKLYDTYGFPLDLTADMLREKNLR-VDEAKFDALM 414

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQR  A+A   G G       + +L EK+G  +F GY+ L                   
Sbjct: 415 SEQRQIAKAAWKGSGDKNVRGDFKALLEKFGENKFSGYEEL------------------- 455

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIR 540
              +  S ++  + +    V+E  +G     +FD TPFYA++GGQ GD+G   +I D   
Sbjct: 456 ---SRTSKVLALLNEDFAEVDELKAGDIGWAMFDVTPFYAQSGGQTGDSGEVESIAD--- 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + D Q K  G+ + H  + R  L+    + L +  + R Q++ +HSATHLLH AL  +
Sbjct: 510 --VFDTQ-KFYGLNLSHLRLNRN-LKIGDIVGLKVS-EEREQIARHHSATHLLHAALRAV 564

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+H++Q GS +  D LRFD +H K ++  EL  IE+ VN+ + +     T IM+ +DA 
Sbjct: 565 LGAHIAQAGSLVEADRLRFDFSHPKALSDEELAKIEEFVNNAVCKGCAAKTEIMDIDDAK 624

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA AL G KY  +VRVVS      G  S  LCGG HV +  EI   +IV ES + AG+
Sbjct: 625 NSGAIALFGEKYGSKVRVVSF-----GEISKELCGGIHVRNLSEIGSFFIVKESGVSAGV 679

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRIEA+  + A +  +    KL  +++ LK  +   +  +E++ +E R L  Q+ HA   
Sbjct: 680 RRIEAVCSRAALNLALQNRAKLAEISAELKGIE--PLRAIEKLKDEIRSLKDQIKHAS-- 735

Query: 779 LQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                   S H +A +N       ++ V+S ++K+++D  +   +   IML+ +  + K 
Sbjct: 736 --------SSHALAFLNVGDTKLCVASVESGDIKTMIDEFKNSHEKAAIMLMQVGADGKI 787

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S+   V    +    A +  +L A++L GGGGGGR   A +GG +  K ++AI    S+ 
Sbjct: 788 SIAAGVKNAPI---KAGEWVKLVAQIL-GGGGGGRDDFATAGGKDVLKIEEAIKEAISYA 843

Query: 897 K 897
           K
Sbjct: 844 K 844


>gi|46907732|ref|YP_014121.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b F2365]
 gi|59798548|sp|Q71ZG6|SYA_LISMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46881001|gb|AAT04298.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 879

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKLEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|218132498|ref|ZP_03461302.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992608|gb|EEC58610.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC
           43243]
          Length = 868

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/895 (39%), Positives = 518/895 (57%), Gaps = 48/895 (5%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           +L+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R 
Sbjct: 2   YLDFFESKGHLKMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +VY
Sbjct: 62  G----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDASRLYPSVY 117

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
            +D+EAF +W K  G++ ++I R    DNFW    +GPCGPCSEI++D+GE    G PG 
Sbjct: 118 VDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPGC 176

Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
           +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  + +D+D 
Sbjct: 177 TVGCDCDRYMEVWNNVFSQFNNDGHGNYSDLIQKNIDTGMGLERLAVVVQDVDSIFDVDT 236

Query: 249 FKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
            + L     ++ G+ Y+ +    V+ RVI DH+RS +F+++DGI+P+NEGRGYVLRR++R
Sbjct: 237 LQALRNKVCEMAGVTYKEDEKTDVSIRVITDHIRSVTFMVSDGIMPSNEGRGYVLRRLLR 296

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RA  + RLLG     +  L   +       YPEL + K  I + +  E+++F KT+D+GL
Sbjct: 297 RAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELDEKKAFIFKVIDQEEDKFNKTIDQGL 356

Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
            +L+ + + L K  ++IL+G  AFKLYDT+G PLD+ ++IL  +G+  ID   F  A+EE
Sbjct: 357 GILEQLEADLVKTGNKILSGADAFKLYDTYGFPLDLTKEILEEKGIT-IDEEGFKSAMEE 415

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR +AR           +   +   +    + F+GYD                      L
Sbjct: 416 QRIKARTARKTTNYMGADATVYDEIDPAITSSFVGYD---------------------KL 454

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
           TN   S V  +  +  +VE    G +  +V D+T FY   GGQ GD G         ++ 
Sbjct: 455 TN--QSKVSVLTTEENVVEALSDGDRGTIVVDETVFYGSMGGQEGDRGVITSPEGEFRVD 512

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                  G   H  ++ +G+++T  ++ LT+D   R     NHSATHLL  AL  +LG+H
Sbjct: 513 TTIHLKGGRIGHVGVMTKGMIKTGDTVTLTVDAPARAATCANHSATHLLQKALRDVLGTH 572

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q GS + PD LRFD  H + +T  E+ S+E  VN+ IA+ LPVVT IM+ EDA  +GA
Sbjct: 573 VEQKGSYVDPDRLRFDFAHFQAMTPDEIASVESIVNEKIAEALPVVTNIMSLEDAKKTGA 632

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL G KY D+VRVVS+     G  S+ LCGGTHV++T  IML  IVSES + AGIRRIE
Sbjct: 633 MALFGEKYGDKVRVVSM-----GDFSTELCGGTHVANTSNIMLFKIVSESGVAAGIRRIE 687

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+TG    ++    +  L       K     ++ R+  + +E + L   + K K +L  E
Sbjct: 688 ALTGNGVLAYYRNIENTLAEACRTAKTEPSQLIHRIASMNDEIKSLSSENEKLKAKLANE 747

Query: 785 DL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +     +  +I    F+   +++VD   L+++ D ++ KI SGI++L   ++  K +++
Sbjct: 748 AVGDVLANVQEIGSFRFLPVSVADVDMNGLRTLGDNMKDKIGSGIVILAS-TQGDKVNII 806

Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            + T+D + +  +A +L +  A ++ GGGGGGRP+MAQ+GG N    D+ +A  A
Sbjct: 807 AMATDDAVAKGAHAGNLIKAVAPIV-GGGGGGRPNMAQAGGKNPAGIDEMLAKAA 860


>gi|167746982|ref|ZP_02419109.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662]
 gi|167653942|gb|EDR98071.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662]
          Length = 868

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 350/906 (38%), Positives = 513/906 (56%), Gaps = 76/906 (8%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL+FF+   H ++ S SL+P ND +L+  N+GM P K  FTGQE P    V T QKC+R 
Sbjct: 2   FLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPKTRVATCQKCIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  RLY +VY
Sbjct: 62  G----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPERLYPSVY 117

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
            +D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G P  
Sbjct: 118 LDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPDC 176

Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
           +   E +RY+E+WN VF QFE         L   +IDTGMGLER+A V+QE  + +D+D 
Sbjct: 177 TVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVVVQEVDSIFDVDT 236

Query: 249 FKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
            K +     ++ G+ Y  +  N ++ RVI DH+RS+SF+I+DG++P+NEGRGYVLRR++R
Sbjct: 237 IKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSNEGRGYVLRRLIR 296

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RA  + R+LG  +  +  L   +  E    YPEL + +  I + L +E+E+F +T+D+GL
Sbjct: 297 RAARHGRMLGMKDLFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTEEEQFNRTIDQGL 356

Query: 367 VLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            +L   +  +S  GK E L G  AFKLYDT+G PLD+ ++IL  +G++ +D   F +A+E
Sbjct: 357 QILADMEEAMSREGKKE-LAGKDAFKLYDTYGFPLDLTKEILEEKGIS-VDETGFQRAME 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +QR +AR           +   +   +    ++F+GYD L             C+     
Sbjct: 415 QQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL------------TCE----- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+     Q E+ +  V GQ+  ++  +TPFYA +GGQ  D G  + +     +
Sbjct: 458 -----SEIIAMTTDQ-ELTDSLVEGQRGTIICSRTPFYATSGGQEADQGVILSENSSFAV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K + G F H   V  G L     ++L ++ +NRRQ   NHSATHLL  AL T+LGS
Sbjct: 512 EDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHLLQKALRTVLGS 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS      LRFD TH  P+T  E+K +E  VN+ IA +LPV T++M+ ++A  +G
Sbjct: 572 HVEQAGSSNNAKHLRFDFTHFSPMTPEEIKKVEHIVNEEIAASLPVETKLMSMDEAKNTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVVS+     G  S  LCGGTHV++TG I    I+SE+ I AG+RRI
Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITAFKILSETGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EAIT +    +    +E+L   +  +K +   ++ R+E +  E ++L   +   K +L  
Sbjct: 687 EAITDKAVFEYYEKMEEELMEASKVVKSTPAKLMARLEALMTELKELHSENESLKSKLAK 746

Query: 784 EDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L     ++ DVN    ++  +++VD   L+ + D+L++K+  G+I+L           
Sbjct: 747 DALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVLAS--------- 797

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--------------GRPHMAQSGGPNGNK 884
                  L  +   V +A   A+  G   G               GRP+MAQ+GG     
Sbjct: 798 ------SLGGKVFLVAMATDGAQKAGAHAGNLIKGIAGCVGGGGGGRPNMAQAGGKKPEG 851

Query: 885 ADQAIA 890
            D AIA
Sbjct: 852 IDDAIA 857


>gi|159900152|ref|YP_001546399.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|205830067|sp|A9B660|SYA_HERA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159893191|gb|ABX06271.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 889

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 349/902 (38%), Positives = 502/902 (55%), Gaps = 60/902 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL++F + GH ++PSSSLIP ++PTL+FT +GMV F ++F G+E   Y    + 
Sbjct: 4   SELRQRFLDYFARQGHAVVPSSSLIPADNPTLLFTVAGMVQFNDVFLGRESRPYSRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GK NDL+NVG + RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E  LD +R
Sbjct: 64  QKCLRISGKQNDLENVGPSPRHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTQEIGLDPKR 123

Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +++++Y+       DEEA  LW  ++ + A++I+R    DN WS  + GP GPCSEI + 
Sbjct: 124 MWVSIYEGDEQIPADEEAHDLW--LAYMPAERILRFDAKDNLWSAGDVGPRGPCSEIHYY 181

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+     +P G + E + Y+EIWNLVFMQ+ +       +LPK SIDTGM LER+A V 
Sbjct: 182 IGDDPDNQVPEGVNSEDDTYMEIWNLVFMQYNRDENGVLTLLPKPSIDTGMSLERLAIVK 241

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           Q    +Y+ DLF  +I    ++ G     Y+ N+   H V+ DH RS +F+IADG+ P N
Sbjct: 242 QGVFRSYETDLFTPIIHTVMELLGTGSDHYQANSSAYH-VVADHSRSIAFMIADGLRPGN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGR YVLRR++RRA  + + +G+  P +   +  +   MG+AYPEL   +  I E +  E
Sbjct: 301 EGRSYVLRRLVRRAAYFGQTIGFKAPFLAETIATVIDMMGAAYPELRSKQAYIAEVVTGE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF KTL  GL  L+ +L +     + +G  AFKLYDT+G PLD+ + I+  RGL  +D
Sbjct: 361 EERFNKTLAGGLRQLEAMLPNQADKAVFSGADAFKLYDTYGFPLDLTERIVAERGLT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  +   LE QR+R R  +       TE+ W   +     T F GY+ L           
Sbjct: 420 LAGYEAELEAQRARGRGAAQFKKGAVTER-W--AERNLAPTSFTGYNELESWGH------ 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+   GE +     GQ+V  V D+TP YAE+GGQ+GD+G  
Sbjct: 471 -----------------VLALEFDGEELGTVQRGQEVAFVLDRTPCYAESGGQMGDSGVL 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +G    + I DVQK   G+FVH   V +G +     + +T+D   RR +  NH+ATHLLH
Sbjct: 514 VGPHGTIVIDDVQKPVPGVFVHRGKVSKGSVSLGEQVTVTVDAARRRDIVRNHTATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL   LG H  Q GS + P+ LRFD  + K ++S +L+ IED VN  I  +  V    M
Sbjct: 574 RALRDTLGDHAEQKGSLVAPERLRFDFNNQKGLSSEQLQQIEDQVNAWIRADSKVEAAEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----------SSALCGGTHVSSTGE 704
               A   GA AL G KY D VRVV+V   +   H          S  LCGG HV+ TGE
Sbjct: 634 ALPQARELGAMALFGEKYGDVVRVVTVGCGNASDHIHTNSEAPVCSRELCGGVHVARTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    IVSE S+ +G+RRIEA+TG+ A   +  Q + +++L   L    G V  +++ + 
Sbjct: 694 IGFFKIVSEGSVASGVRRIEAVTGRAAAEWVSQQAQLIRTLGDKLGAQPGKVEEKLDALL 753

Query: 765 --EEYRKLQLIHAKRKLQL-NVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKK 819
             ++ R+ ++   + ++    V+ L   KI  A    +   +   D+   + + + L+ K
Sbjct: 754 LDQKARRDEIERLRGEIAAGQVDSLLAQKIEQAGTPLVVARVEASDADSFRRLGEQLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           I SG+++L G   + K  +L   T D +   R     +  L+AKV   GGGGGR   AQ+
Sbjct: 814 IGSGVVIL-GTVIDGKPLLLAAATADQVKAGRHAGNLVKALAAKVG--GGGGGRADFAQA 870

Query: 878 GG 879
           GG
Sbjct: 871 GG 872


>gi|258424044|ref|ZP_05686926.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845665|gb|EEV69697.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 877

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 8   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 68  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSNDQVVDKLTQ 737

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875


>gi|262048613|ref|ZP_06021496.1| alanyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|259163260|gb|EEW47819.1| alanyl-tRNA synthetase [Staphylococcus aureus D30]
          Length = 876

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY+D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYSDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|49483863|ref|YP_041087.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425743|ref|ZP_05602167.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428403|ref|ZP_05604801.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431041|ref|ZP_05607420.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433727|ref|ZP_05610085.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436642|ref|ZP_05612686.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282904199|ref|ZP_06312087.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282906025|ref|ZP_06313880.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282914423|ref|ZP_06322209.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919393|ref|ZP_06327128.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282924718|ref|ZP_06332386.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|283958379|ref|ZP_06375830.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503498|ref|ZP_06667345.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510515|ref|ZP_06669221.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293531055|ref|ZP_06671737.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|56749413|sp|Q6GG85|SYA_STAAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49241992|emb|CAG40689.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271437|gb|EEV03583.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275244|gb|EEV06731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278244|gb|EEV08886.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281820|gb|EEV11957.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283993|gb|EEV14116.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282313553|gb|EFB43948.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317203|gb|EFB47577.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321604|gb|EFB51929.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282331317|gb|EFB60831.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595817|gb|EFC00781.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|283790528|gb|EFC29345.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920323|gb|EFD97389.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095164|gb|EFE25429.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466879|gb|EFF09399.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|315195518|gb|EFU25905.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 876

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIVSAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   N VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|282916887|ref|ZP_06324645.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770692|ref|ZP_06343584.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319374|gb|EFB49726.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460839|gb|EFC07929.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  + +  +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGLVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|302333292|gb|ADL23485.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 876

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 350/924 (37%), Positives = 526/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPSEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  + +  +EI +G  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEI-SGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S   + I F       A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITF-------ASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|283955931|ref|ZP_06373421.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792591|gb|EFC31370.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 842

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 356/892 (39%), Positives = 516/892 (57%), Gaps = 72/892 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEVTPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175

Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               SSE+     G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K
Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N+D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYV
Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  
Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T++ G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F  
Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RA+A   G G  T    + +L EK+G   F+GY+            K  C+  
Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            + L +     V  +   G             V+ + TPFYA +GGQ  D+G       +
Sbjct: 461 ILALLDEEFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504

Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ D QK      ++ + ++ G  L+    +   ID + R Q++ +HSATHLLHHAL  
Sbjct: 505 REVLDTQK---FFNLNLSFIKAGEELKVGDIVHAKIDTEKREQIARHHSATHLLHHALRE 561

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A
Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEA 621

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG
Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778
           +RRIEA+  + A   +  Q E+L      LK    +++  ++++  E   L+  +    K
Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKAKDELK--NNDILSGLKKLKNEILSLKNELKNSSK 733

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +L+ +++   +I         +  VD+ ++K+++D  + K    +I+L+ +  EK    
Sbjct: 734 TELDSKNIQGVEIC--------VKRVDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            I +   + D    A  L + +A++L GG GGGR   A +GG + NK D+A+
Sbjct: 782 -ITLAAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLNKIDEAL 831


>gi|282908937|ref|ZP_06316755.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911255|ref|ZP_06319057.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|295428195|ref|ZP_06820827.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590838|ref|ZP_06949476.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|282324950|gb|EFB55260.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327201|gb|EFB57496.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|295128553|gb|EFG58187.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575724|gb|EFH94440.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437914|gb|ADQ76985.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 877

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 8   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 68  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 623 WKGIDVNIQEMDIVSAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV   N VV ++ +
Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQ 737

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875


>gi|329767041|ref|ZP_08258569.1| alanyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328837766|gb|EGF87391.1| alanyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 873

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 345/914 (37%), Positives = 525/914 (57%), Gaps = 83/914 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF + GH++ PS+SL+P +DPTL++ NSG+   K  F G+E P    +T  
Sbjct: 7   TQIRRMYLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGREIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT E    L++
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEKWLGLEK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            +L +T++ ED EA+ LW  + GL  D+IIRI  N  FW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLSVTIHPEDTEAYDLWHNVIGLPEDRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGED 179

Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E +RY+E+WN+VF Q+          LP  +IDTGMGLER
Sbjct: 180 ADTWSPKEEMYPGG------ENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           + +VLQ+   N+D DLF  +I+  E+++G KY  N    V  +VI DH+R+ +F IADG 
Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVNAEQDVAFKVIADHIRTVAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++LG  +  M  L   +   M   YP + ++   +++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLGLNKSFMYKLTDVVAEIMEDYYPNVKESANFVKDV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E++RF +TL+ G  +L+ +   + KD  ++++G  AFKLYDT G P+++ ++     
Sbjct: 354 ILKEEDRFHETLNEGEAILNNIAKEV-KDTTKVISGKDAFKLYDTFGFPIELTEEYAEEL 412

Query: 409 GLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +DI  FN+ +E+Q+ RAR+      S+ + S    +I        G ++F GY  L
Sbjct: 413 GLT-VDIDGFNEEMEKQKERARSSRQEDSSMQVQSDLYNRI-------VGDSEFTGYTKL 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYA 522
                  ++ K+L                 AIV + + + E   G++ V+VVFD+TPFYA
Sbjct: 465 ------TDEGKLL-----------------AIVDKDDNLLENYKGEENVKVVFDKTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G  + +G + ++ DV+K  +   +H   V  G L       L +D   R  
Sbjct: 502 ESGGQVADRGLVLAEGFKAEVIDVKKLPDKRHIHLVKVLEGELVVGKEYKLEVDRAYRLN 561

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATHLL+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  
Sbjct: 562 IEKNHTATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQ 621

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I   L + T  M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH +++
Sbjct: 622 IWNALEIKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANS 676

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            E+ +  IVSES + AG+RRIEA+TG+ A  +L  Q+E L+S+    K +  NVV +V  
Sbjct: 677 AEVGIFKIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANVSNVVEKVSG 736

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA 815
           +  E +KL     K  LQ  + +   + + +       VN ++ ++   +   LK ++D 
Sbjct: 737 LQSEIKKLA--KEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDN 794

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            + K+++ +I    ++ E K + ++ V + + D++NA  L  + A V   G GGGRP MA
Sbjct: 795 AKSKLENYVIAFASVN-EDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMA 852

Query: 876 QSGGPNGNKADQAI 889
           Q+G  N +  D+A 
Sbjct: 853 QAGAKNKDNIDKAF 866


>gi|258446862|ref|ZP_05695016.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257854437|gb|EEV77386.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300]
          Length = 876

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 350/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++      + S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----ALFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S +KV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|253733131|ref|ZP_04867296.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728887|gb|EES97616.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|329733217|gb|EGG69554.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 877

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 8   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 68  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGTTVSAEVNQNDRRDI 562

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875


>gi|255311581|ref|ZP_05354151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317882|ref|ZP_05359128.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276s]
          Length = 875

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 333/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F KT
Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       ID+ +F + 
Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R ++    + +     F   +    ++FIGYD L    F             
Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +    
Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 515

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL   L
Sbjct: 516 LVSHTIAPKTGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D ++
Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635

Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           S       G KY D VRVVS  +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771
           RRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L         Q
Sbjct: 690 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  + K  L     SC KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850


>gi|222151505|ref|YP_002560661.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120630|dbj|BAH17965.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 874

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 361/925 (39%), Positives = 529/925 (57%), Gaps = 89/925 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+  P    +T  
Sbjct: 7   AEIRQMYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRVIPSNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E    ++ 
Sbjct: 67  QKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSERWMAIEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ LW    GL+ D+I RI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTIHPEDTEAYDLWVNEIGLTDDRITRI--EGNFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNPDHTYSPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q+   NYD DLF  +I+A+EQ++G KY  N  + V  +VI DH+R+ SF I DG 
Sbjct: 234 MASISQDVPTNYDTDLFMPIIKATEQISGRKYRDNKEDDVAFKVIADHIRTVSFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ +A+ +   +P M  L+  +   M   YP++ + K  I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAQKIDINKPFMYDLVDIVAAIMKPYYPDVDKNKDFIKKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE++RF +TL+ GLV  + +  S    D +L G+  FKLYDT G P+++ +++    G
Sbjct: 354 VKSEEDRFHETLEEGLVQFNALKDSAKASDNVLKGEDVFKLYDTFGFPVELTEELAEEAG 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           +  +D   F  A+E QR+RAR       S+ + +     I  S       + F+GYD L 
Sbjct: 414 VE-VDHEGFEVAMEAQRTRAREARQKTQSMQVQNEVLSNIRVS-------STFVGYDTLT 465

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                  V + + A++Q G  VEEA     V+ +  +TPFYA +
Sbjct: 466 -----------------------VDTNIIALLQDGVEVEEADDRSDVQFIMAETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ DTG   G+G  +++T+V K   G  +H   V  G + T+ ++   ++ + R  + 
Sbjct: 503 GGQVADTGTVTGEGFEIEVTEVTKAPNGQNLHTGTVRFGKV-TKSAVNAAVNAEFRTFVI 561

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHL+H AL  +LG+HV+Q GS +TP+ LRFD +H  P+T  E+  +E  VN+ I 
Sbjct: 562 KNHSATHLMHQALKDVLGTHVNQAGSLVTPERLRFDFSHFGPVTKEEIAKVEQIVNEKIW 621

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           QN+ V    M   +A A GA AL G KY D VRV  VE  D   +S  LCGG HV +TGE
Sbjct: 622 QNIHVEINEMPISEAKAKGAMALFGEKYGDIVRV--VEMSD---YSIELCGGVHVRNTGE 676

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I L  IVSES   AG+RRIEA+T + A S+L    + + +L   +KV ++  +  +V EI
Sbjct: 677 IGLFKIVSESGTGAGVRRIEAVTSKAAFSYLSEYVDTVDTLLPVVKVKAKEQLTEKVNEI 736

Query: 764 WEEYRKLQLIHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEV---DSKELKSVM 813
               ++ +    K+ +QLN E       D+S + I ++N +  + +EV   D+K L+ +M
Sbjct: 737 TSMVKEQE----KQIVQLNKEISALKMGDIS-NNIQEINGIKVLSTEVEVQDAKMLRELM 791

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  +I LV  +   K + +  V + L D+  A DL +  A+   GG GGGRP 
Sbjct: 792 DDYKSKVQDAVIFLVAAT--DKLNYMASVPKALTDKVKAGDLIKAVAQET-GGKGGGRPD 848

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
            AQ G PN     +A+  V S++ +
Sbjct: 849 SAQGGAPNPKDVTKALQFVNSYINQ 873


>gi|15605482|ref|NP_220268.1| alanyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789490|ref|YP_328576.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237805100|ref|YP_002889254.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|6707747|sp|O84754|SYA_CHLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123606616|sp|Q3KKU4|SYA_CHLTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|6578113|gb|AAC68344.2| Alanyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76168020|gb|AAX51028.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273400|emb|CAX10315.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436296|gb|ADH18470.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296438155|gb|ADH20316.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140656|gb|ADH97414.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 875

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 333/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F KT
Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       ID+ +F + 
Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R ++    + +     F   +    ++FIGYD L    F             
Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +    
Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 515

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL   L
Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D ++
Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635

Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           S       G KY D VRVVS  +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771
           RRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L         Q
Sbjct: 690 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  + K  L     SC KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850


>gi|229062084|ref|ZP_04199409.1| Alanyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229169132|ref|ZP_04296847.1| Alanyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614360|gb|EEK71470.1| Alanyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228717236|gb|EEL68911.1| Alanyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 880

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 357/913 (39%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVAI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|153953949|ref|YP_001394714.1| alanyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219854563|ref|YP_002471685.1| hypothetical protein CKR_1220 [Clostridium kluyveri NBRC 12016]
 gi|205830035|sp|A5N7T5|SYA_CLOK5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146346830|gb|EDK33366.1| AlaS [Clostridium kluyveri DSM 555]
 gi|219568287|dbj|BAH06271.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 879

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 338/908 (37%), Positives = 529/908 (58%), Gaps = 50/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+K  H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V T
Sbjct: 6   LNQIREMYLSFFEKKAHLRLPSFSLVPQNDKSLLLINAGMTPLKPYFTGLKVPPSKRVAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T+Y +D+EA+ +W K + +   KI R+   DNFW     GPCGPCSEI++D+ +  
Sbjct: 122 RLYVTIYLDDDEAYDIWVKSTDVDPSKIFRLGKEDNFWEHG-VGPCGPCSEIYYDRAQEK 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              +    E  + ++ +E WNLVF QF++        L   +IDTGMGLERMAT++Q + 
Sbjct: 181 INSVEEFVEAADNDKIVEFWNLVFTQFDKDENGNYNRLSNPNIDTGMGLERMATIMQGEN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D    +++    ++G KY    NN ++ R+I DH+RS +F+I+DGILP+NEGRGY
Sbjct: 241 SIFEVDTINAILKEVCNISGTKYNEHKNNDISIRIITDHIRSITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG  +  +  L   +      +YP+L   K  I++ +R E+ERF 
Sbjct: 301 VLRRLLRRAAKHGKSLGIDDRFLYKLSNVVIDNSCESYPKLKDRKEYIKKVIRLEEERFD 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L+  +  L      +L G+ AFKLYDT+G P+++ ++IL  + + G+D+  
Sbjct: 361 ETIDSGMKILNEFIEELENSNSLLLEGEKAFKLYDTYGFPIELTEEILQEKNM-GVDLEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+ ++ Q+  AR+          E    +    Y  T F GY+ L  +           
Sbjct: 420 FNKKMQNQKEMARSARTETNYMGAEDTVLNKIPLYIDTVFEGYNSLEST----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S VK ++++GE V     G+K  ++   TPFYAE GGQ+GD G    +
Sbjct: 469 ------------SKVKLMIKEGEFVSLLSQGEKGVILVANTPFYAEMGGQVGDKGIIYNE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               +I D +    G  +H   V  G +  E +++L +D   R  +  NH++THLL  AL
Sbjct: 517 NFEGKIIDCKNNVAGKILHFVEVISGSVSLEDTVLLKVDKNRRDDIRRNHTSTHLLGEAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q+GS +    LRFD  H + +   +L+ +E+ VN+ I +   V T +M+ E
Sbjct: 577 RRVLGEHVHQSGSYVDEHRLRFDFNHFESLNDKQLREVEELVNENIRKAKTVNTNLMSLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA A+  +KY+D VRVVS+     G  S  LCGGTHV ++GEI L  IVSE+ I 
Sbjct: 637 EAKKSGAVAIFDSKYSDEVRVVSI-----GDFSRELCGGTHVGNSGEIGLFKIVSEAGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AGIRRIEA+TG+ A  +L  + + LK +A+  K S+  +V +++  + E R+L  +L   
Sbjct: 692 AGIRRIEAVTGREAVEYLYSKSDMLKEIANKFKCSEKEIVHKLDLQFNELRELRKELEEF 751

Query: 776 KRKLQLNVED--LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K KL  + E+  L+  KI   +N  + I+ +VD   L+ + D ++ K Q+ +++L G + 
Sbjct: 752 KIKLAGSAEESILNGVKIVKGINLFTGILKDVDGNALRELADKIRSKSQNAVVLL-GSNA 810

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K +++ + T+D +++   V   ++      + GGGGGGRP MAQ+GG   +K ++AI 
Sbjct: 811 EGKVNLVAMATKDAVEK--GVHCGKIIKEVAAVAGGGGGGRPDMAQAGGKFPDKLEEAIG 868

Query: 891 GVASFLKK 898
             ++ ++K
Sbjct: 869 KCSAIMEK 876


>gi|161509845|ref|YP_001575504.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848647|ref|ZP_06789393.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|304380785|ref|ZP_07363452.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|205830218|sp|A8Z4F6|SYA_STAAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160368654|gb|ABX29625.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|269941104|emb|CBI49490.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|294824673|gb|EFG41096.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|302751447|gb|ADL65624.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340661|gb|EFM06594.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|320140495|gb|EFW32349.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144034|gb|EFW35803.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314293|gb|AEB88706.1| Alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728452|gb|EGG64889.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 877

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 8   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 68  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875


>gi|296327899|ref|ZP_06870435.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155033|gb|EFG95814.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 867

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 342/896 (38%), Positives = 525/896 (58%), Gaps = 66/896 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCSRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWVEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N   N   +VI DH R+ +FL+ DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGYT+  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLINGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+        +++ K+
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEK------TEDEGKL 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  +   D                         +K  ++FD+TPFY E+GGQ+GD G   
Sbjct: 471 LSLREAKD-------------------------RKYLLIFDKTPFYGESGGQIGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDNFEAKVLDVQKQKD-IFIHTVKFEKGIPEENKTYKLEVDVIKRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS +  + LRFD +H + +T  +L  IED VN  I + + VV    +
Sbjct: 565 ALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I SE  
Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
           I AG+RRIEA TG  A  +L+ ++E   LK++   LK +  N+V +VE+  E  +  + +
Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEADILKNIEKKLKATNSNLVEKVEKNLETLKDTEKE 737

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828
           L   K+KL L     +   + ++  +  +I+    K   +L++++D ++   +  I++L 
Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             S + K +  + VT+ L D+  A DL +  A++  GG GGGRP  AQ+GG +  K
Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRPDFAQAGGKDEGK 850


>gi|254829737|ref|ZP_05234392.1| alanyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 879

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ +
Sbjct: 348 YFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR+RARA    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +V+E  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDRVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
            +  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELRTALDYVSTWVKE 876


>gi|297748879|gb|ADI51425.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749759|gb|ADI52437.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 924

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 333/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 53  NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 112

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 113 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 172

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 173 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 230

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 231 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 290

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RGYVL
Sbjct: 291 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 350

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F KT
Sbjct: 351 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 410

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       ID+ +F + 
Sbjct: 411 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 469

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R ++    + +     F   +    ++FIGYD L    F             
Sbjct: 470 EVEAKERSRKNTKKTKNDSDS--VFQDLDPTNTSEFIGYDTLSCDTF------------- 514

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +    
Sbjct: 515 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 564

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL   L
Sbjct: 565 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 624

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D ++
Sbjct: 625 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 684

Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           S       G KY D VRVVS  +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 685 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 738

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771
           RRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L         Q
Sbjct: 739 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 798

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  + K  L     SC KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 799 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 854

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ
Sbjct: 855 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 899


>gi|298694898|gb|ADI98120.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++    +  +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKETTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|57650500|ref|YP_186513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161149|ref|YP_494270.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195427|ref|YP_500231.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221731|ref|YP_001332553.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221141112|ref|ZP_03565605.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258450555|ref|ZP_05698617.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|284024675|ref|ZP_06379073.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|71153554|sp|Q5HFE4|SYA_STAAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122539371|sp|Q2FXV9|SYA_STAA8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123485547|sp|Q2FGA8|SYA_STAA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830217|sp|A6QHF9|SYA_STAAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57284686|gb|AAW36780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127123|gb|ABD21637.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202985|gb|ABD30795.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374531|dbj|BAF67791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|257861713|gb|EEV84512.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|315198685|gb|EFU29013.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 876

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|291485146|dbj|BAI86221.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 878

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 358/912 (39%), Positives = 532/912 (58%), Gaps = 62/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N+ +   +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +ERF +TL+ GL +L  ++    KD+   +++G   FKLYDT+G P+++ ++      + 
Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + + +QR RAR     +GS   +    +L++    + F+GY         K 
Sbjct: 417 -VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQ------TKA 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           D  ++                  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+GD 
Sbjct: 468 DANIIV-----------------LLQDGQLIEEAYEGESVQIILDETPFYAESGGQIGDK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATH
Sbjct: 511 GYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV  
Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IV
Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E ++ Q
Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKEAQ 745

Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L NVE    LS  K  D VN ++  ++  D   L++++D L+ K+ S +I+
Sbjct: 746 RENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G  +  K ++   VT+DL+++  +A  L + +A+V  GGGGGGRP MAQ+GG    K 
Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863

Query: 886 DQAIAGVASFLK 897
           ++A+A V  ++K
Sbjct: 864 EEALASVEDWVK 875


>gi|262051273|ref|ZP_06023497.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282920165|ref|ZP_06327890.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|259160910|gb|EEW45930.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282594513|gb|EFB99498.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765]
          Length = 876

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----RVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|237741671|ref|ZP_04572152.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229429319|gb|EEO39531.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 867

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 343/896 (38%), Positives = 528/896 (58%), Gaps = 66/896 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N+  +   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                         + E   G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IE+ VN+ I + + V     N
Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISYHN 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D+VRVV V        S+ LC GTH+ + G+I L  I+SE  
Sbjct: 625 IEEAKKLGAMMLFGDKYGDKVRVVDVP-----GFSTELCEGTHIDNIGKIGLFKIISEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           I AG+RRIEA TG  A  +L+ ++E   L  +   LK +  N+V +VE+  E  ++   +
Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828
           L + K+KL L         + ++N +  +I+    K   +L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             S + K +  + VT+ L+D+  A DL +  A++  GG GGGR   AQ+GG +  K
Sbjct: 798 --STQDKLAFAVGVTKTLIDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850


>gi|89897947|ref|YP_515057.1| alanyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123483857|sp|Q255X6|SYA_CHLFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89331319|dbj|BAE80912.1| alanyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 875

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 334/880 (37%), Positives = 501/880 (56%), Gaps = 54/880 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H ++PSS + P NDP+++FTN+GM  FK+IF  +E   Y   TT 
Sbjct: 4   NTLRSNFLKFYANRHHAIVPSSPIFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK++AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKKQAIAFAWEVSLSVFNFDPNL 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW++   L +++I R+T  DNFWSMAETGPCG CSE+ FD+G    
Sbjct: 124 IYATVHEKDDEAFALWEQ--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGANFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F +        LP   +DTG GLER+ +++      
Sbjct: 182 KATSPLEDTDGERFLEYWNLVFMEFNRTADGSLLSLPSKHVDTGAGLERLVSIISGTNTV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ + LI  +E+++G KY  +  +    RVI DH RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRLLISKTEELSGKKYHEDEALGAAFRVIADHTRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RR++ Y + LG+T+P +  ++P+L   MG AYPEL  +   I+E + +E+E + K+
Sbjct: 302 RKILRRSVNYGKRLGFTKPFLAEIVPSLVDSMGEAYPELRLSLSQIQEVMTTEEENYFKS 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL       +++G+ AFKL DT+GLPLD +  +L       +D+ +F Q 
Sbjct: 362 LHRGGNLLQQVLKSSSTSSLISGEDAFKLKDTYGLPLDEIA-LLAKDYNFSVDLETFYQL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIW--FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            +E + R+R  ++      T+ I+   SL E    ++FIGY+ L    F           
Sbjct: 421 EKEAKERSRK-NIAKSQNATDAIYDSLSLGEN---SEFIGYNDLSCDTF----------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIG 536
                       ++AIV +G+ V      +K  ++   TPFYAE GGQ+GD+G   C+ G
Sbjct: 466 ------------IEAIVSEGKQVSSLQEKEKGALILKSTPFYAEKGGQIGDSGEIFCSDG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             +   ++       GI +HH  V +G L    ++   ++   R+++S NH+  HLLH A
Sbjct: 514 TFV---VSHTTSPKAGIVIHHGEVSQGQLSQAQAVTTQVNCIRRKRISNNHTGCHLLHKA 570

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG H+ Q GS +    +R D TH K I+  +L SIE  VN+ I +N  V TR    
Sbjct: 571 LEMTLGDHIRQAGSYVDDSKIRLDFTHPKAISPEDLASIELLVNEKIRENHQVETRNTLY 630

Query: 657 EDAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            D + S       G KY+D VRVVS  +      S  LCGGTH   TG++    I+ E +
Sbjct: 631 SDVVNSKEIKQFFGDKYSDVVRVVSAGF------SHELCGGTHAEFTGDLGYFRILKEHA 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           +  GIRRIEA+TG+ A       +E L  +A  L+  +  ++ +++ I EE ++   Q+ 
Sbjct: 685 VATGIRRIEAVTGKEAEILAHQDNEDLNEIALILQSPRDQILHKLQNILEEKKEQAKQIS 744

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + KL  ++ D     C ++ DV+F+ H + E +S  L+   + L +KI S +I L   
Sbjct: 745 ELETKLIHSLLDKLIDHCQQVNDVSFLIHHLPESESHRLQQYANCLHQKIPSRLISLWTT 804

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            K  K  +   +++DL+ +   A DL ++     GG  GG
Sbjct: 805 QKNGKYIIFSRISDDLIKQGLQAKDLLKILLAPCGGRWGG 844


>gi|294783331|ref|ZP_06748655.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480209|gb|EFG27986.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 867

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 342/894 (38%), Positives = 519/894 (58%), Gaps = 62/894 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKLNKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            NN++ DL   +++ + ++TG +Y  ++  N   +VI DH R+ +FL+ DG++P+NEGRG
Sbjct: 239 PNNFETDLLFPILEEAARITGSQYGKSSETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+V+FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEVSFKLYDTYGFPYELTEEIAEERGVTVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +K+G T+F GY+         ED   
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYE-------KTEDEAT 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L                           EA  G+ + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 470 LLSS-----------------------REAKDGKYL-LIFDKTPFYAESGGQVGDQGRIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H   +E+G      +  L ++   R   + NH+ATHLLH 
Sbjct: 506 SDNFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS +  D LRFD +H + +T+ +L  IE+ VN+ I + + VV    +
Sbjct: 565 ALREVVGTHVQQAGSLVDSDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE  
Sbjct: 625 IEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773
           I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  +  +  L 
Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDTEKSLE 739

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830
             K+K+ L     +   + ++N    +I+    K   +L++++D ++   +  I++L   
Sbjct: 740 TLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           S + K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K
Sbjct: 798 STQDKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESK 850


>gi|205830105|sp|A4IR80|SYA_GEOTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 878

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 364/911 (39%), Positives = 530/911 (58%), Gaps = 60/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TV+ EDEEA+ +W+   GL  ++IIR+     FW + E GP GP +EIF+D+GE 
Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGKFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG LP+NE
Sbjct: 239 QDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     G++ +
Sbjct: 359 ERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS-V 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + +E QR RARA    + S   +  +   +K++   ++F+GYD L         
Sbjct: 418 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDIKDE---SRFVGYDELV-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+ D G
Sbjct: 467 ---------------VSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+ATHL
Sbjct: 512 VFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++PV   
Sbjct: 572 LHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDIF 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IVS
Sbjct: 632 YKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R+LQ 
Sbjct: 687 ESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQR 746

Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   A R   +  E L+    ++  V  ++  +   D  +L+++ D L++K+ + +I+L
Sbjct: 747 ENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + +  K  ++  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG + NK  
Sbjct: 807 AAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKDANKVG 864

Query: 887 QAIAGVASFLK 897
           +A+  V +++K
Sbjct: 865 EALDYVETWVK 875


>gi|15924608|ref|NP_372142.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927198|ref|NP_374731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|148268099|ref|YP_001247042.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394167|ref|YP_001316842.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979936|ref|YP_001442195.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316601|ref|ZP_04839814.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006403|ref|ZP_05145004.2| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793693|ref|ZP_05642672.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258411008|ref|ZP_05681288.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420190|ref|ZP_05683145.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258438192|ref|ZP_05689476.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443655|ref|ZP_05691994.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258448776|ref|ZP_05696888.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258453595|ref|ZP_05701573.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|269203244|ref|YP_003282513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893121|ref|ZP_06301355.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282928252|ref|ZP_06335857.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|295406740|ref|ZP_06816545.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296276721|ref|ZP_06859228.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245678|ref|ZP_06929543.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|54039649|sp|P67011|SYA_STAAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54042024|sp|P67010|SYA_STAAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830214|sp|A7X328|SYA_STAA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830215|sp|A6U287|SYA_STAA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830216|sp|A5ITE3|SYA_STAA9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13701416|dbj|BAB42710.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14247389|dbj|BAB57780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741168|gb|ABQ49466.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946619|gb|ABR52555.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156722071|dbj|BAF78488.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787665|gb|EEV26005.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840158|gb|EEV64622.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843901|gb|EEV68295.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257848236|gb|EEV72227.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851061|gb|EEV75004.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257858054|gb|EEV80943.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257864326|gb|EEV87076.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262075534|gb|ACY11507.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590059|gb|EFB95141.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282764439|gb|EFC04565.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|285817300|gb|ADC37787.1| Alanyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|294968487|gb|EFG44511.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|297177329|gb|EFH36581.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|312830005|emb|CBX34847.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129899|gb|EFT85889.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727520|gb|EGG63976.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 876

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 350/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S +KV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|296437225|gb|ADH19395.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11222]
          Length = 874

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 333/886 (37%), Positives = 491/886 (55%), Gaps = 54/886 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           ++ D+ +HLI   E ++G  Y         RVI DH+RS SF IADG+LP N  RGYVLR
Sbjct: 242 FEADVLRHLISKIENLSGTTYSTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVLR 301

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           +I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F KTL
Sbjct: 302 KILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKTL 361

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
            RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       ID+ +F +  
Sbjct: 362 QRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKLE 420

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            E + R+R ++    + +     F   +    ++FIGYD L    F              
Sbjct: 421 VEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF-------------- 464

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                    ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +     
Sbjct: 465 ---------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTFL 515

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL   LG
Sbjct: 516 VSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTLG 575

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D ++S
Sbjct: 576 EHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMSS 635

Query: 663 GA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                  G KY D VRVVS  +      S  LCGGTH  +TG+I    I  E ++  GIR
Sbjct: 636 SEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGIR 689

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------QL 772
           RIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L         QL
Sbjct: 690 RIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQL 749

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +  + K  L     SC KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 750 VQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 805

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
             +  VL  V++DL  R   V    L A++L   GG  GG+   AQ
Sbjct: 806 NGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 849


>gi|163942138|ref|YP_001647022.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229135211|ref|ZP_04264010.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|205829987|sp|A9VI09|SYA_BACWK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163864335|gb|ABY45394.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648253|gb|EEL04289.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 880

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVAI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|295109896|emb|CBL23849.1| alanyl-tRNA synthetase [Ruminococcus obeum A2-162]
          Length = 879

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 365/912 (40%), Positives = 519/912 (56%), Gaps = 58/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG E P    VTT
Sbjct: 6   VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPRTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFNIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     +++G +YE N  + V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTICALRNLVCEISGKEYEKNYQDDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +     + YPEL + K  I + L +E+ +F 
Sbjct: 301 VLRRLIRRAARHGRLLGIKGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNEENQFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   +    ++ L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLRILGDMEEEMKTAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGYT-IDEDG 419

Query: 418 FNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F +A+EEQR +AR      + +G  +   ++I  ++      T+F GYD L         
Sbjct: 420 FQKAMEEQRVKARTSREVTNYMGADATVYDEIDVNV-----TTEFEGYDNLI-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + +IV   + GQK  V   +TPFYA  GGQ GD G
Sbjct: 467 ---------------YDSEITVLTTEKDIVTSLMEGQKGTVFVKETPFYATMGGQEGDCG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  + D  K   G F H   +E G+L T  ++ L ++ Q RR    NHSATHL
Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGYMESGMLSTGETVSLKVNEQARRDTEKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H + +T  E+   E  VN  I   LPV T 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTPDEIVEAEALVNKEIQAALPVETN 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E+A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV +T  IML  IVS
Sbjct: 632 IMDIEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSRELCGGTHVRNTSSIMLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+TG     +   Q+  L   A  LK     V  ++  +  + + LQ 
Sbjct: 687 EAGVAAGVRRIEALTGNGVIEYYKKQEAMLHEAAKALKAQPAEVAEKIAHLQADVKALQS 746

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
            +   K +L    L    ++I DV  +  + S V   D   L+ + D L++KI  G+++L
Sbjct: 747 ENESLKSKLAQGSLGDVMNQIVDVKGVKLLASRVEGIDMNGLRDLGDQLKEKIGEGVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             ++   K ++L + T+       +A +L +  A ++ GGGGGGRP+MAQ+GG N  KA 
Sbjct: 807 AAVNG-GKVNLLAMATDAAQKAGAHAGNLIKGVAAIV-GGGGGGRPNMAQAGGKNPEKAQ 864

Query: 887 QAIAGVASFLKK 898
           +AI   A  L++
Sbjct: 865 EAIDAAAGILEQ 876


>gi|159030141|emb|CAO91033.1| alaS [Microcystis aeruginosa PCC 7806]
          Length = 878

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 347/904 (38%), Positives = 521/904 (57%), Gaps = 54/904 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P +   TT 
Sbjct: 12  SEIRQRFLDFFAARNHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKTPEFPRATTS 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F+L   R
Sbjct: 71  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPPER 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ EDEEAF +W+   G+ A +I ++   DNFW    TGPCGPCSEI++D    + 
Sbjct: 127 LVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEADNFWVSGPTGPCGPCSEIYYDFHPEL- 185

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 186 GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVANNY 245

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   ++  + ++  + Y+  +    V+ +VI DH+RS   +IADGI  +N  RGYVL
Sbjct: 246 ETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGYVL 305

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +         S Y  + + + +I+  L  E+ RF +T
Sbjct: 306 RRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFLET 365

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL+ +L    +   ++G  AF LYDT+G PL++ Q+I   +GL+ +D   F Q 
Sbjct: 366 LERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFEQE 422

Query: 422 L--EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +  ++QRS+A   ++ L   T +     L E    T+F+GY  L+               
Sbjct: 423 MKKQQQRSKAAHETIDL---TVQGSLDKLAEHIHPTEFLGYTDLQA-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++  G+ VE A +G +V+VV DQTPFYAE+GGQ+GD G   GD +
Sbjct: 466 ---------TATVTAVLVAGKTVESAAAGTEVQVVLDQTPFYAESGGQIGDKGYLTGDNL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DVQK++ GIF+H   +ERG++ T  ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 517 LIRVEDVQKES-GIFIHFGRIERGVVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++ + +SQ GS ++ + LRFD    +P+TSAEL+ +E+ +N  IA+       +M  E+A
Sbjct: 576 LVDAGISQAGSLVSFERLRFDFNCPRPLTSAELQQVEEQINTWIAEAHDTQIAVMGLEEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRV+ +        S  LCGGTHV +T EI L  I+SE+ I AG
Sbjct: 636 KQKGAIAMFGEKYGSEVRVIDIPR-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 690

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ G    ++L  +D+ ++ L    KV    +  R+  +  E +  + QL   K+
Sbjct: 691 IRRIEAVAGPAVLAYLNERDQVVRDLCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 750

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L LN  D        I +   +   + ++D+  L +  + LQ+K+  G ++L       
Sbjct: 751 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 810

Query: 835 KASVLIVVTEDLL-DR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++ DR   A       AK+   GGGGGRP++AQ+GG + +K  +A+A  
Sbjct: 811 KVSLVAAFSPRVIKDRGLQAGKFIGAIAKIC-AGGGGGRPNLAQAGGRDASKLSEALAKA 869

Query: 893 ASFL 896
            S L
Sbjct: 870 KSQL 873


>gi|254828262|ref|ZP_05232949.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600650|gb|EEW13975.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 879

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR+RARA    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +V+E  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
            +  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNTAELGTALDYVSTWVKE 876


>gi|138896126|ref|YP_001126579.1| alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267639|gb|ABO67834.1| Alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 892

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 364/911 (39%), Positives = 530/911 (58%), Gaps = 60/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +   
Sbjct: 21  AEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRICNA 80

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     D 
Sbjct: 81  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 136

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TV+ EDEEA+ +W+   GL  ++IIR+     FW + E GP GP +EIF+D+GE 
Sbjct: 137 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGKFWDIGE-GPSGPNTEIFYDRGEA 193

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 194 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 252

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG LP+NE
Sbjct: 253 QDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPSNE 312

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+E+
Sbjct: 313 GRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRTEE 372

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     G++ +
Sbjct: 373 ERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS-V 431

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + +E QR RARA    + S   +  +   +K++   ++F+GYD L         
Sbjct: 432 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDIKDE---SRFVGYDELV-------- 480

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+ D G
Sbjct: 481 ---------------VSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQG 525

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+ATHL
Sbjct: 526 VFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATHL 585

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++PV   
Sbjct: 586 LHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDIF 645

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IVS
Sbjct: 646 YKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIVS 700

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R+LQ 
Sbjct: 701 ESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQR 760

Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   A R   +  E L+    ++  V  ++  +   D  +L+++ D L++K+ + +I+L
Sbjct: 761 ENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIVL 820

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + +  K  ++  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG + NK  
Sbjct: 821 AAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKDANKVG 878

Query: 887 QAIAGVASFLK 897
           +A+  V +++K
Sbjct: 879 EALDYVETWVK 889


>gi|224418366|ref|ZP_03656372.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827685|ref|ZP_04870570.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313141896|ref|ZP_07804089.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253511091|gb|EES89750.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130927|gb|EFR48544.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 853

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 346/897 (38%), Positives = 518/897 (57%), Gaps = 60/897 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           +R  FLEFFQ  GH++  S  L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 5   VRALFLEFFQSKGHKIYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPTPSPNIATSAQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI  AW+ +T+     +  L
Sbjct: 64  LCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEVLGFSKEVL 123

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+T+++ D+EAF+LWK+   + +++I R+   DNFW M +TGPCGPCSEIF DQG E   
Sbjct: 124 YVTIHESDDEAFELWKE--HIDSNRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGAEKFN 181

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+  +L+ K++N+
Sbjct: 182 GPEDYFGGDGDRFLEIWNLVFMQYERDIEGNLKPLPKPSIDTGMGLERVMALLEGKSSNF 241

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  LI   E++ G KY   +  + RVI DH R+ +FL+A G+    EGRGYVLRRI
Sbjct: 242 DSSLFMPLIAKVEEIVGQKYFYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRRI 301

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG  +P +  +L ++C  MGS Y  L + K +I+   ++E+ERF +TL+ 
Sbjct: 302 LRRAVRHGYLLGMRKPFVYEVLESVCENMGSHYHYLKEKKEIIKTQCKAEEERFFETLEN 361

Query: 365 GLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           G+ L +  L  L K++   + +G++AFKLYDT+G PLD+ QD+L   G  G+DI SF   
Sbjct: 362 GMNLFNKELEVLKKEKSKALFSGEIAFKLYDTYGFPLDLTQDMLRENGF-GVDIDSFEVC 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +++Q+ +A+A+  G G    E  + +L  K+G   FIGY+        +   K+L     
Sbjct: 421 MQKQKEQAKANWKGSGDSIQEGDFKTLLSKFGENVFIGYEC------AESKSKILA---- 470

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IR 540
             L +     VK +  +G             V+FD+TP Y ++GG +GD G  +    I 
Sbjct: 471 --LLDENFKEVKTLQGKG------------YVMFDKTPLYPQSGGPIGDKGRILQQNEIV 516

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY-QNRRQLSINHSATHLLHHALST 599
             ITD +K     F  +      +   E+   + I+  ++R +++ +HSATHLLH AL  
Sbjct: 517 ATITDTKK----YFGLNISTLETLKPLEIGQEVWIEVSKDRLEIAKHHSATHLLHKALRE 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS +  + LRFD +H K ++  EL  +E  VN+ I +  P +  +M  E A
Sbjct: 573 VLGDHITQAGSLVESNRLRFDFSHPKALSYEELNKVELLVNEKILKANPQICEVMGIEAA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY + VRV+S         S  LCGG HV +T  I   YIV ES + +G
Sbjct: 633 KSKGAMALFGEKYGENVRVISFG------DSIELCGGIHVENTANIGSFYIVKESGVSSG 686

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G+ A  +      ++ S    LK    N++  +++  E+ + L+      K 
Sbjct: 687 VRRIEAVCGKAAYYYGKEALSEIASAKEMLKTQ--NLLEGIKKQKEQIKALKSQGGNSKN 744

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           ++N       KI ++N +S +I      ++K ++D ++ K +  +I+L+  S    A V 
Sbjct: 745 EIN-----NLKIQEINGISMVIQGFSGSDIKEIIDEIKNKYEKVVILLIDESGRIAAGVK 799

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +       A    +  AKV+ GG GGGR   A +GG   +K ++A+     F+
Sbjct: 800 NAPIK-------AGIWVKEVAKVM-GGNGGGRDDFATAGGKALDKIEEALKKAKEFV 848


>gi|224500670|ref|ZP_03669019.1| alanyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 879

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR+RARA    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +V+E  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
            +  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPKEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|255026679|ref|ZP_05298665.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 879

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PXMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIIFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR+RARA    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +V+E  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
            +  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELRTALDYVSTWVKE 876


>gi|16803544|ref|NP_465029.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|47097201|ref|ZP_00234765.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|224501556|ref|ZP_03669863.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|254898330|ref|ZP_05258254.1| alanyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912178|ref|ZP_05262190.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936506|ref|ZP_05268203.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|20532249|sp|Q8Y722|SYA_LISMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16410933|emb|CAC99582.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|47014415|gb|EAL05384.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609100|gb|EEW21708.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590151|gb|EFF98485.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 879

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR+RARA    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +V+E  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
            +  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGR
Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876


>gi|21673007|ref|NP_661072.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|41018235|sp|Q8KG04|SYA_CHLTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21646071|gb|AAM71414.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 885

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 336/869 (38%), Positives = 485/869 (55%), Gaps = 69/869 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR +FL+FF    H ++ S+ +IP  DPTL+FTN+GM  FK++F G+    Y    
Sbjct: 2   NSREIRQSFLDFFAGKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T+ + L +
Sbjct: 62  DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTEVWKLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY TVY +DEE+FKLW+  + +    I++    DNFW M ETGPCGPCSEI  D    
Sbjct: 122 ERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTPD 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             GG P  +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+A VLQ K++
Sbjct: 182 GSGG-PLVNVGDHRVIELWNLVFIQYDRQADGTLVPLPQKHVDTGMGFERVAAVLQGKSS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NYD D+F  L     ++TG  Y  +    + +  RVI DH R+ +F ++DG +P NEGRG
Sbjct: 241 NYDSDVFAPLFDRITELTGTVYTASLDSPSDIAMRVIADHCRTLTFALSDGAMPGNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ YA  LG  EP++  ++  L   MG  +PEL + +  +E+ +R+E+E F
Sbjct: 301 YVLRRILRRAVRYAGTLGCHEPIIYKMVEVLVRTMGDVFPELEKQQATVEKIIRAEEESF 360

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TL RG  + + V++ +       ++G  AFKLYDT G PLD+ + +    GL GID  
Sbjct: 361 LVTLGRGTEIFNEVVADMKTAGSTTISGADAFKLYDTFGFPLDLTRLMAAEVGL-GIDEA 419

Query: 417 SFNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            F   + EQ++RAR    G   +     E  WF+ +     T F+GYD+L          
Sbjct: 420 GFEHCMMEQKTRARMDRKGKMQMQDDGGEWQWFAPE---APTTFVGYDMLE--------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                   +  +V   VSG K+ +V DQTPFYAE+GGQ+GD G 
Sbjct: 468 -----------------------TEATLVAARVSGDKLLMVLDQTPFYAESGGQVGDHGT 504

Query: 534 AIGDGIRLQITDVQKKAEGIF-----VHHAIVERGILRTE------MSLVLTIDYQNRRQ 582
               G RL +TD +K  E I       H  + +  +   +      +S+   +D   R  
Sbjct: 505 LETAGYRLDVTDTRKDGEQIVHVVTSAHDKVRDCAVTPADVSFDGVVSVKAAVDRDRRVA 564

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL  +LG HV Q GS +TP+ LRFD +H   +++ EL+ +E  VN  
Sbjct: 565 TERNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSAEELEQVEHEVNAE 624

Query: 643 IAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +   V     +  E+A+A GA A  G KY DRVRVV V     G+ S  LCGGTHV +
Sbjct: 625 IRKAASVTKHADVPYEEALALGALAFFGDKYADRVRVVEVP----GI-SIELCGGTHVGN 679

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RV 760
            G+I ++ IVSESS+ AGIRRIEA+TG  A + L  +   L+ + + LK+      G ++
Sbjct: 680 IGQIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRDLQEIKNLLKLKADEEAGPKI 739

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDA 815
           +E+ EE + L     + +L   ++ L+       ++     M+  +  V   EL+    A
Sbjct: 740 KELLEEKKALDKQLQESRLAGLLDRLAASLAGGEEVNGCRIMTERLDGVSGDELRQAAVA 799

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           L++++   + +L G++  K + V     E
Sbjct: 800 LRERVPCAVGLLCGVADGKVSLVAFASDE 828


>gi|253732273|ref|ZP_04866438.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724062|gb|EES92791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 877

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 350/924 (37%), Positives = 523/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 8   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 68  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK     + F+GYD  
Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSVSTFVGYD-- 463

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875


>gi|22299646|ref|NP_682893.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|22295830|dbj|BAC09655.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 891

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 361/911 (39%), Positives = 520/911 (57%), Gaps = 60/911 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+F+   GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P     TT QK
Sbjct: 18  IRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRATTAQK 76

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  + L   RL 
Sbjct: 77  CLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPPERLL 132

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP-G 185
           ++V++ D+EA+ +W +  GL  ++I R+    NFW+   TGPCGPCSEI++D     P  
Sbjct: 133 VSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYD---FYPEK 189

Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           GL     ++  R+IE++NLVFM+  Q ++  R  L   +IDTGMGLERMA VLQ   NNY
Sbjct: 190 GLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPNNY 249

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+A+ Q  G++Y+  N       +VI DH R+   LIADG+  +N GRGYVL
Sbjct: 250 ETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGYVL 309

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + ++RLLG    +   L         + YP + + + +I   L+ E+E+F KT
Sbjct: 310 RRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFLKT 369

Query: 362 LDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           LDRG  LL  +LS L K +        L G  AF L+DT+G PL++ Q+I   +G+ G+D
Sbjct: 370 LDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQGI-GVD 428

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F   + EQR R++A    +     E I  SL ++   TQF GY+ L           
Sbjct: 429 VAEFEACMAEQRQRSQAAHETIDVTVQEGI-DSLGDQLHPTQFRGYEEL----------- 476

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        +++ V AI+  G     A +G +V+V+ + TPFYAE+GGQ+GD G  
Sbjct: 477 ------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRGYL 524

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + I DVQK+ E +FVH+  VERG L+    +   ID   RR++  +H+ATHLL 
Sbjct: 525 ASSDALVHIHDVQKQKE-LFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHLLQ 583

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++  ++SQ GS +  D LRFD    +P+T  EL+ IED +N  I+++    T IM
Sbjct: 584 AALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTYIM 643

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
              +A A GA A+ G KY ++VRV+ +     GV S  LCGGTHV +T EI L  I+SES
Sbjct: 644 ALSEAKAKGAIAMFGEKYGEQVRVLDIP----GV-SMELCGGTHVHNTAEIGLFKIISES 698

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
            + AGIRRIEAI G   R +L  +D  ++ L    K     ++ R+ ++  + +  Q  L
Sbjct: 699 GVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQKAL 758

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHI----ISEVDSKELKSVMDALQKKIQSGIIMLV 828
            H K +L L        +   V   SH+    ++ VD + LK+  + L  K+ SG ++L 
Sbjct: 759 EHLKAELALAKTQALLEQAKPVG-NSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVLA 817

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 K ++L+  ++D++ R  +A  L    A+V  GG GGGRP+ AQ+GG    K  +
Sbjct: 818 TQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLAE 876

Query: 888 AIAGVASFLKK 898
           A+    S LK+
Sbjct: 877 ALELAHSRLKE 887


>gi|223044141|ref|ZP_03614180.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442535|gb|EEE48641.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 876

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 349/917 (38%), Positives = 515/917 (56%), Gaps = 73/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E    ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGDE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           MA++ Q    NY+ DLF  +I   E V+G KY   E  ++   +VI DH+R+ +F IADG
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVA-FKVIADHIRTIAFAIADG 292

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 293 ALPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKR 352

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++    KD   + G+ AFKLYDT+G P+++ +++    
Sbjct: 353 VIKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQE 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL+ +D+ +F   +++QR RAR A           ++   LK     + F+GY+      
Sbjct: 413 GLS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV---LKNITDDSTFVGYE------ 462

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    SI+  ++  GE VE   +G+ V      TPFYA +GGQ
Sbjct: 463 -----------------TTDYQSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQ 505

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G    D   + +++V K   G  +H  IV+ G       +  +++ ++RR +  NH
Sbjct: 506 VADEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL  +E  VN+ I + +
Sbjct: 566 SATHLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGI 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V  + M  ++A + GA AL G KY D VRVV++        S  LCGG HVS+T EI L
Sbjct: 626 DVRIQEMGIDEAKSMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVSNTAEIGL 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV S   VVG+V ++ EE
Sbjct: 681 FKIVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEE 740

Query: 767 YRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            + L     +R  ++      NVED     I D+  ++  +   ++K ++S MD  + K+
Sbjct: 741 EKSLLKQLEQRNKEITSLKMGNVED-QVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKL 799

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           Q  II+L   + + K S++  V + L D+  A D+ +  A ++ GG GGGRP MAQ GG 
Sbjct: 800 QDTIIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGT 857

Query: 881 NGNKADQAIAGVASFLK 897
                 +A+  +  ++K
Sbjct: 858 QPENITEALHFIKDYIK 874


>gi|34222740|sp|Q8DH56|SYA_THEEB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 882

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 361/911 (39%), Positives = 520/911 (57%), Gaps = 60/911 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+F+   GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P     TT QK
Sbjct: 9   IRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRATTAQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  + L   RL 
Sbjct: 68  CLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPPERLL 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP-G 185
           ++V++ D+EA+ +W +  GL  ++I R+    NFW+   TGPCGPCSEI++D     P  
Sbjct: 124 VSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYD---FYPEK 180

Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           GL     ++  R+IE++NLVFM+  Q ++  R  L   +IDTGMGLERMA VLQ   NNY
Sbjct: 181 GLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPNNY 240

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+A+ Q  G++Y+  N       +VI DH R+   LIADG+  +N GRGYVL
Sbjct: 241 ETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGYVL 300

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + ++RLLG    +   L         + YP + + + +I   L+ E+E+F KT
Sbjct: 301 RRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFLKT 360

Query: 362 LDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           LDRG  LL  +LS L K +        L G  AF L+DT+G PL++ Q+I   +G+ G+D
Sbjct: 361 LDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQGI-GVD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F   + EQR R++A    +     E I  SL ++   TQF GY+ L           
Sbjct: 420 VAEFEACMAEQRQRSQAAHETIDVTVQEGI-DSLGDQLHPTQFRGYEEL----------- 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        +++ V AI+  G     A +G +V+V+ + TPFYAE+GGQ+GD G  
Sbjct: 468 ------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRGYL 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + I DVQK+ E +FVH+  VERG L+    +   ID   RR++  +H+ATHLL 
Sbjct: 516 ASSDALVHIHDVQKQKE-LFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHLLQ 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++  ++SQ GS +  D LRFD    +P+T  EL+ IED +N  I+++    T IM
Sbjct: 575 AALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTYIM 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
              +A A GA A+ G KY ++VRV+ +     GV S  LCGGTHV +T EI L  I+SES
Sbjct: 635 ALSEAKAKGAIAMFGEKYGEQVRVLDIP----GV-SMELCGGTHVHNTAEIGLFKIISES 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
            + AGIRRIEAI G   R +L  +D  ++ L    K     ++ R+ ++  + +  Q  L
Sbjct: 690 GVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQKAL 749

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHI----ISEVDSKELKSVMDALQKKIQSGIIMLV 828
            H K +L L        +   V   SH+    ++ VD + LK+  + L  K+ SG ++L 
Sbjct: 750 EHLKAELALAKTQALLEQAKPVG-NSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVLA 808

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 K ++L+  ++D++ R  +A  L    A+V  GG GGGRP+ AQ+GG    K  +
Sbjct: 809 TQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLAE 867

Query: 888 AIAGVASFLKK 898
           A+    S LK+
Sbjct: 868 ALELAHSRLKE 878


>gi|21283297|ref|NP_646385.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486451|ref|YP_043672.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297207662|ref|ZP_06924097.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300911744|ref|ZP_07129187.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|33301697|sp|Q8NW87|SYA_STAAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56749384|sp|Q6G8V1|SYA_STAAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21204737|dbj|BAB95433.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49244894|emb|CAG43355.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|296887679|gb|EFH26577.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300885990|gb|EFK81192.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 876

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 350/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+E+    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIEN----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|297588300|ref|ZP_06946943.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573673|gb|EFH92394.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 873

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 340/902 (37%), Positives = 513/902 (56%), Gaps = 63/902 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL +F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K      T+
Sbjct: 6   LNEIRKKFLNYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AWD LT E ++ + 
Sbjct: 66  SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKKEAITWAWDFLTNELEVPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182
            L+ITVY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D+G E 
Sbjct: 122 ILWITVYEEDEEAYNIWVNEVGVSPERVVKLGKGDNFWEL-DQGPCGPCSEIHVDRGFEF 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240
            P       +EGER++E+WNLVF QF +    K ER   P  +IDTGMGLER+  VL+  
Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE RG
Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHQNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+++F
Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEERDRIVKIANAEEKKF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++ L       +D   F
Sbjct: 359 QETLDLGLSILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEDEF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474
            + +EEQ+ RAR      GS     + +S  +KYG     T+F GYD L+          
Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEGLPETKFDGYDSLKDES------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                             + I   GE      +GQ   ++ D T FY E GGQ+GD G  
Sbjct: 464 ------------------EVIEIYGEDENNLNAGQMGIILLDCTTFYGEGGGQVGDKGII 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH
Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVIEGSLNVGDKVTIEVDELNRRDIMKNHSATHLLH 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G HV+Q GS +  + LRFD+TH + +T  +L+ +E  VN+ IA  +PV    M
Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVTKEQLEKVEQIVNEKIALGIPVKIDEM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E + + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SES
Sbjct: 626 SLEQSQSIGARGLFEDKYQDVVRVVQM-----GDYSKELCGGTHVKTTSDIQMLKILSES 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEAITG+    +L  +D  + ++   LK S  + + R  E+  E  K     
Sbjct: 681 SVAAGVRRIEAITGRAVYKYLNERDSLIDTVKHSLKASNEDEITRRIEMNTEEIKELKKK 740

Query: 775 ----AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                 + L  N++ +      I         +S +D+   +   + ++ K++ G+++L 
Sbjct: 741 LKDITNKDLSSNIDSVIEDAVDIDGTKVCVFALSGLDNNSFRDFGENIKSKLEDGVVILA 800

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+
Sbjct: 801 N-SDESKVSFITLVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDE 858

Query: 888 AI 889
           A+
Sbjct: 859 AL 860


>gi|224476716|ref|YP_002634322.1| alanyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421323|emb|CAL28137.1| putative alanyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 876

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 349/919 (37%), Positives = 517/919 (56%), Gaps = 77/919 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  F+++F++ GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQNFIDYFKEQGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREIPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT +    ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSDRWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EA+ LW  + GL   +IIRI  N  FW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTEAYDLWHDVIGLEESRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGPE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I+  E+++G KY+   +  V  +VI DH+R+ +F I DG 
Sbjct: 234 MASIAQNVRTNYETDLFMPIIEDVEKISGKKYQEDADQDVAFKVIADHIRTIAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+ A+   M   YPE+ Q    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYQLVDAVADIMEPYYPEVKQKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++        ++NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLEEGLAILNDMIKDAKAGGNVINGKDAFKLYDTYGFPIELTEEIADNEG 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +D+ +F   +++QR RAR     + S+ + S         LK     + F GYD+  
Sbjct: 414 LT-VDMKTFEAEMQKQRDRARQARQKSESMQIQSEV-------LKNITTQSTFTGYDV-- 463

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               M ++ K+                   I+  GE VE+A +G  V  V + TPFYA +
Sbjct: 464 ----MDQNTKITD-----------------IIVNGERVEKADAGDTVFFVLEATPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   +++T+V     G  +H   V+ G +     +  ++++ +RR + 
Sbjct: 503 GGQVADQGTVSNENFEIEVTEVTNAPNGQNLHKGAVQFGQVAEGAEVEASVNHADRRDIK 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL+ +E  VN+ I 
Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEGDRLRFDFSHFGPVTEEELEQVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V  + M  E+A ASGA AL G KY D VRVV     D    S  LCGG HV +T E
Sbjct: 623 KGIDVTIKEMPIEEAKASGAMALFGEKYGDVVRVV-----DMSPFSIELCGGIHVQNTSE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEI 763
           I L  IVSES   AG+RRIEA+TG+ A  +L     K K++   +K  Q   V  +V ++
Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKAAFLYLEEIQNKFKAVKHQVKAKQDEQVAEKVSQL 737

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQK 818
            +  ++L     +R  ++    +     +I ++N +  +  +VD   +K L+  MD  + 
Sbjct: 738 IDNEKQLHKQLEQRNQEITALKMGSIDDQIEEINGLKVLALQVDAENAKALRQTMDDFKS 797

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K+Q  +I+L     +K A V  V   +  D+  A DL +  A V+ GG GGGRP MAQ G
Sbjct: 798 KLQDSVIILASDVGDKVALVATVPKSE-TDKVKAGDLIKNMAPVV-GGKGGGRPDMAQGG 855

Query: 879 GPNGNKADQAIAGVASFLK 897
           G   +K  +A+  + +++K
Sbjct: 856 GSEPSKITEALQFIKNYIK 874


>gi|86151665|ref|ZP_01069879.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124034|ref|YP_004066038.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841294|gb|EAQ58542.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017756|gb|ADT65849.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 842

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 355/892 (39%), Positives = 517/892 (57%), Gaps = 72/892 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175

Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               SSE+     G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K
Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N+D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYV
Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  
Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T++ G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F  
Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RA+A   G G  T    + +L EK+G   F+GY+            K  C+  
Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            + L +     V  +   G             V+ + TPFYA +GGQ  D+G       +
Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504

Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ D QK      ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL  
Sbjct: 505 REVLDTQK---FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALRE 561

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A
Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEA 621

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG
Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778
           +RRIEA+  + A   +  Q E+L  +   LK    +++  V+++  E   L+  +    K
Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILNGVKKLKNEILSLKNELKNSSK 733

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +L+ +++   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK    
Sbjct: 734 TELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            I +   + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 782 -ITLAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|237803179|ref|YP_002888373.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274413|emb|CAX11208.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
          Length = 875

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 332/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y   TT 
Sbjct: 4   NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ D   
Sbjct: 64  QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW+K   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E    
Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  RGYVL
Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F KT
Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLP+D +  +L       ID+ +F + 
Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
             E + R+R ++    + +     F   +    ++FIGYD L    F             
Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                     ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +    
Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 515

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL   L
Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D ++
Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635

Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           S       G KY D VRVVS  +      S  LCGGTH  +TG+I    I  E ++  GI
Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771
           RRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L         Q
Sbjct: 690 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  + K  L     SC KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850


>gi|253583470|ref|ZP_04860668.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834042|gb|EES62605.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 866

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 349/907 (38%), Positives = 529/907 (58%), Gaps = 62/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK  F GQ++  Y  VTT 
Sbjct: 5   NQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ +W+ +T+   +D+ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWSWEFVTEVLKIDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V+  D+EA ++W +      ++++R+  ++N+W+   TG CGPCSEI  D G    
Sbjct: 120 LWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLGPAY- 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A ++Q K
Sbjct: 179 GGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           +NN++ DL   LI+ + ++T  +Y  +   N   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 SNNFETDLLFPLIEEAAKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG++E  +  ++  + + M +AYP+L      I++ ++ E+E+F
Sbjct: 299 YVLRRILRRAVRHGRLLGHSELFLYKMVDKVVSMMENAYPDLRSNVEHIKKVVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD+G+ L++  +  L    I  L+G+V FKLYDT+G P ++ ++I   +G+  I   
Sbjct: 359 SRTLDQGMQLVNQEIEKLKAANITKLDGEVTFKLYDTYGFPYELTEEICQEKGIE-ISKE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   + EQ+ +ARA    +     +       ++YGAT+F GY  L      K+  K+L
Sbjct: 418 EFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDRYGATEFSGYTTL------KDTGKLL 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
             +   D                          K  ++FD TPFY E+GGQ  D G   G
Sbjct: 472 SSRDGKD-------------------------NKKLMIFDVTPFYGESGGQAADIGMITG 506

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G   ++ DVQK+ +GIF+H   V +G         L ID  NR   + NH+ATHLLH A
Sbjct: 507 NGFEGKVIDVQKQ-KGIFIHTVEVLKGTPIEGEEYFLEIDEANRMATAKNHTATHLLHEA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV Q GS +  + LRFD  H + +T+ EL+ +E+ VN+ IA+ + V    M+ 
Sbjct: 566 LREVLGSHVQQAGSFVNGERLRFDFNHYEAMTAEELEKVEELVNEKIAEAIDVKIANMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A  +GA AL G KY D VRVVSVE       S  LCGGTH+ + G+I L  I SE+ I
Sbjct: 626 DEAKKAGATALFGDKYGDVVRVVSVEG-----FSIELCGGTHIDNIGKIGLFKIESEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQL 772
            AGIRRIEA+TG+ A   +   +  LK++   +K  + N++ RVE+    I E  ++L+ 
Sbjct: 681 AAGIRRIEAVTGKGAYKVVKDTEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKELEE 740

Query: 773 IHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + R  Q+  + L+ +   I  V  +        + +L+ ++D ++ K+ + +++L   
Sbjct: 741 LKS-RFTQIEAQALAENSEIINGVTVIMKTFKTRTADDLRKMIDYVKDKMTNTVVVLA-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   KA     VT++L  +  A +L +  A V+ GG GGGRP  AQ+GG +  K  +A+ 
Sbjct: 798 SSTDKAIFAAGVTKELTSKVKAGNLVK-EAAVITGGNGGGRPDFAQAGGKDVTKIQEAMD 856

Query: 891 GVASFLK 897
            V   LK
Sbjct: 857 SVKETLK 863


>gi|314933784|ref|ZP_07841149.1| alanine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653934|gb|EFS17691.1| alanine--tRNA ligase [Staphylococcus caprae C87]
          Length = 876

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 349/917 (38%), Positives = 516/917 (56%), Gaps = 73/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E    ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGDE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           MA++ Q    NY+ DLF  +I   E V+G KY   E  ++   +VI DH+R+ +F IADG
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVA-FKVIADHIRTIAFAIADG 292

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+ 
Sbjct: 293 ALPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKR 352

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            ++SE+ERF +TL+ GL +L+ ++    KD   + G+ AFKLYDT+G P+++ +++    
Sbjct: 353 VIKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQE 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL+ +D+ +F   +++QR RAR A           ++   LK     + F+GY+      
Sbjct: 413 GLS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV---LKNITDDSTFVGYE------ 462

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T    SI+  ++  GE VE   +G+ V      TPFYA +GGQ
Sbjct: 463 -----------------TTDYQSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQ 505

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G    D   + +++V K   G  +H  IV+ G       +  +++ ++RR +  NH
Sbjct: 506 VADEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL  +E  VN+ I + +
Sbjct: 566 SATHLLHAALKEVLGYHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGI 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V  + M  ++A + GA AL G KY+D VRVV++        S  LCGG HVS+T EI L
Sbjct: 626 DVRIQEMGIDEAKSMGAMALFGEKYSDIVRVVNM-----APFSIELCGGIHVSNTAEIGL 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV S   VVG+V ++ EE
Sbjct: 681 FKIVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEE 740

Query: 767 YRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            + L     +R  ++      NVED     I D+  ++  +   ++K ++S MD  + K+
Sbjct: 741 EKSLLKQLEQRNKEITSLKMGNVED-QVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKL 799

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           Q  II+L   + + K S++  V + L D+  A D+ +  A ++ GG GGGRP MAQ GG 
Sbjct: 800 QDTIIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGT 857

Query: 881 NGNKADQAIAGVASFLK 897
                 +A+  +  ++K
Sbjct: 858 QPENITEALHFLKDYIK 874


>gi|157164208|ref|YP_001467070.1| alanyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|205830011|sp|A7ZE62|SYA_CAMC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112800400|gb|EAT97744.1| alanyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 852

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 347/898 (38%), Positives = 523/898 (58%), Gaps = 68/898 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQ 59
           M N+  IR  +L+FF+  GHE++ S+ L+P ND TL+FTN+GMVPFK+IFTG+  +P   
Sbjct: 1   MQNLD-IRKAYLDFFKSKGHEVVASAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 59  IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKEAIAYAWEFVTEVLK 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY+TV++ D EAF++W   + ++ ++I R   +DNFW M +TGPCGPCSEIF+DQ
Sbjct: 119 LPKDKLYVTVHESDYEAFEIWS--THIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176

Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           G      P    G   +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  +
Sbjct: 177 GAEHFNTPEDYMGG--DGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAI 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ K +NYD  LF  LI    ++ G  Y   +  ++RVI DH+RS +FL+A G     EG
Sbjct: 235 LQGKFSNYDSTLFMPLISEVAKLCGKPYVYESGASYRVISDHIRSVTFLLAQGTTFDKEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L   K  ++E ++ E+E
Sbjct: 295 RGYVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCELMGGHYTYLNDKKAAVKEQIKLEEE 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF  T+  GL L +  L +    EI +G+ AFKLYDT G PLD+  D+L  +GL  +D  
Sbjct: 355 RFLATIASGLELFESELKNT--KEIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEA 411

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ + EQ++RA+A   G G  + +  +  L EK+G  +FIGY+ L+            
Sbjct: 412 RFDELMSEQKARAKAAWKGSGDKSAKGDFKELLEKFGENKFIGYEELKSK---------- 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       S I+  + ++ + ++   +G++  V+FD TPFYA++GGQ GD G  +G
Sbjct: 462 ------------SKILALLDEEFKNIDGLDAGKEGWVMFDVTPFYAQSGGQCGDNGKIVG 509

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ-----NRRQLSINHSATH 591
              +  + D +K        H +    +++T  +L +  + +     +R + + +HSATH
Sbjct: 510 ---KADVLDTEK-------FHGL-NLSLVKTSAALKVGDEVELEVGSDRAETARHHSATH 558

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ++G+H++Q GS +  D LRFD +H K ++  E+  +E+ VN+ I       T
Sbjct: 559 LLHAALRAVVGTHIAQAGSNVEADRLRFDFSHPKALSGEEISKVENLVNEWIVNGANAKT 618

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M  E+A  SGA AL   KY D+VRVVS      G  S  LCGGTHV +  EI   +I 
Sbjct: 619 QVMELEEAKKSGAIALFNEKYADKVRVVSF-----GDVSKELCGGTHVKNIDEIGSFFIT 673

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES + AG+RRIEA+  + A +  + +  + +      ++     +  V+++  E + L 
Sbjct: 674 KESGVSAGVRRIEAVCSRAALN--LARSFRAELEELKEELKSAEPLNAVKKLKGEIKGL- 730

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
               K KL+ N ++       +VN     ++ +DS ++K+++D  + + +   I+L+ + 
Sbjct: 731 ----KDKLK-NAKNSHALAFLNVNDTKLCVASIDSGDIKTLIDEFKNEHEKAAILLIQVD 785

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +E K S+   V    +    A    + +A++L GG GGG+   A +GG N    + AI
Sbjct: 786 EEGKISLAAGVKNAPI---KAGAWVKFAAQIL-GGNGGGKDDFATAGGKNALAIEDAI 839


>gi|16331117|ref|NP_441845.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2500959|sp|P74423|SYA_SYNY3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1653611|dbj|BAA18523.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 877

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 359/896 (40%), Positives = 522/896 (58%), Gaps = 54/896 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+   +   TT QK
Sbjct: 13  IRQQFLNFFADRQHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKSAEFPRATTSQK 71

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+ F L   RL 
Sbjct: 72  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKSQAIAWAWELSTQVFKLPAERLV 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V++ED+EAF +W+   G+ A +I R+  +DNFW    TGPCGPCSEI++D    + G 
Sbjct: 128 VSVFEEDDEAFAIWRDEIGIPAHRIQRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-GD 186

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+  R+IE +NLVFMQ+ + N      L K +IDTGMGLERMA +LQ+  NNY+ 
Sbjct: 187 EKLDLEDDSRFIEFYNLVFMQYNRDNAGNLTPLEKKNIDTGMGLERMAQILQKVPNNYET 246

Query: 247 DLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   +IQ +  + G+ Y   N    V+ +VI DH+RS   +IADGI  +N GRGYVLRR
Sbjct: 247 DLIFPIIQTAANIAGIDYAQANEKTKVSLKVIGDHVRSVVHMIADGISASNLGRGYVLRR 306

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RLLG        +           YP +++ + LIE+ L+ E+  F KTL+
Sbjct: 307 LIRRVVRHGRLLGINGEFTTKVAATAVQLAQPVYPNVLERQSLIEQELQREEAAFLKTLE 366

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG  LL  +++  G  EI   D AF LYDT G PL++ Q+I   +G+  +D+  F +A++
Sbjct: 367 RGEKLLADLMAD-GVTEIAGAD-AFTLYDTFGFPLELTQEIAEEQGIT-VDVEGFEKAMQ 423

Query: 424 EQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           EQ+ R++A   ++ L   T ++    L      T+F+GY  L+                 
Sbjct: 424 EQQERSKAAHETIDL---TVQESLDKLANHIHPTEFLGYTDLQS---------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  S+IVKA++  GE+V++AV+GQ V++V DQTPFY E+GGQ+GD G   GD + +
Sbjct: 465 -------SAIVKAVLVGGELVDQAVAGQTVQIVLDQTPFYGESGGQIGDKGFLNGDNLLI 517

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           +I DV K+  GIF+H   VERG ++   ++  TID   RR+   NH+ATHLL  AL  ++
Sbjct: 518 RIEDV-KRESGIFIHFGRVERGTVQIGTTITATIDRACRRRAQANHTATHLLQSALKRVV 576

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
              +SQ GS +  + LRFD    + +T  EL+ IED +N  IA+       +M   DA A
Sbjct: 577 DEGISQAGSLVDFNRLRFDFNSPRAVTMEELQQIEDLINQWIAEAHQTEVAVMPIADAKA 636

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA A+ G KY   VRV+ V     GV S  LCGGTHV++T EI L  IV+E+ I AG+R
Sbjct: 637 KGAIAMFGEKYGAEVRVIDVP----GV-SLELCGGTHVANTAEIGLFKIVAETGIAAGVR 691

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKL 779
           RIEA+ G     +L  ++  +K L   LK     +  RV ++ +E +  + QL   K++L
Sbjct: 692 RIEAVAGPSVLDYLNVREAVVKELGDRLKAKPEEIPDRVHQLQQELKASQKQLEALKQEL 751

Query: 780 QLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            L   +        + +   +   +  VD + LK+  + LQ+K+    ++L  I +E K 
Sbjct: 752 ALQKSEQLLTQAQTVGEFKILVADLGTVDGESLKTAAERLQQKLGESAVVLASIPEEGKV 811

Query: 837 SVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S++   +  L+   +  A       AK+  GGGGGGRP++AQ+GG + +K  +A+A
Sbjct: 812 SLVAAFSPQLVKTKQLKAGQFIGAIAKIC-GGGGGGRPNLAQAGGRDASKLPEALA 866


>gi|321312266|ref|YP_004204553.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320018540|gb|ADV93526.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 878

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 358/912 (39%), Positives = 532/912 (58%), Gaps = 62/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N+ +   +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +ERF +TL+ GL +L  ++    KD+   +++G   FKLYDT+G P+++ ++      + 
Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + + +QR RAR     +GS   +    +L++    + F+GY           
Sbjct: 417 -VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQ--------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T   ++I+  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+GD 
Sbjct: 465 -------------TQADANII-VLLQDGQLIEEAHEGESVQIILDETPFYAESGGQIGDK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATH
Sbjct: 511 GYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV  
Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IV
Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +  Q
Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKDAQ 745

Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L NVE    LS  K  D VN ++  ++  D   L++++D L+ K+ S +I+
Sbjct: 746 RENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G  +  K ++   VT+DL+++  +A  L + +A+V  GGGGGGRP MAQ+GG    K 
Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863

Query: 886 DQAIAGVASFLK 897
           ++A+A V  ++K
Sbjct: 864 EEALASVEDWVK 875


>gi|166365301|ref|YP_001657574.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|205830148|sp|B0JI84|SYA_MICAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|166087674|dbj|BAG02382.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 874

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 346/908 (38%), Positives = 520/908 (57%), Gaps = 62/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P +   TT 
Sbjct: 8   SEIRQRFLDFFAARNHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKTPEFPRATTS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F+L   R
Sbjct: 67  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPPER 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ EDEEAF +W+   G+ A +I ++   DNFW    TGPCGPCSEI++D    + 
Sbjct: 123 LVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEEDNFWVSGPTGPCGPCSEIYYDFHPEL- 181

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 182 GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVANNY 241

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   ++  + ++  + Y+  +    V+ +VI DH+RS   +IADGI  +N  RGYVL
Sbjct: 242 ETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +         S Y  + + + +I+  L  E+ RF +T
Sbjct: 302 RRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFLET 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL+ +L    +   ++G  AF LYDT+G PL++ Q+I   +GL+ +D   F Q 
Sbjct: 362 LERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFEQE 418

Query: 422 L--EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +  ++QRS+A   ++ L   T +     L E    T+F+GY  L+               
Sbjct: 419 MKKQQQRSKAAHETIDL---TVQGSLDKLAEHIHPTEFLGYTDLQA-------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++  G+ VE A +G +V+VV D+TPFYAE+GGQ+GD G   GD +
Sbjct: 462 ---------TATVTAVLVAGKTVESAAAGTEVQVVLDRTPFYAESGGQIGDKGYLTGDNL 512

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ GIF+H   +ERGI+ T  ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 513 LIRIEDVQKES-GIFIHFGRIERGIVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 571

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS ++ D LRFD    +P+TS+EL+ +E+ +N  IA+       +M  E+A
Sbjct: 572 LVDGGISQAGSLVSFDRLRFDFNCPRPLTSSELQQVEEQINTWIAEAHDTQIAVMGLEEA 631

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRV+ +        S  LCGGTHV +T EI L  I+SE+ I AG
Sbjct: 632 KQKGAIAMFGEKYGSEVRVIDIPS-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 686

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ G    ++L  +D+ +++L    KV    +  R+  +  E +  + QL   K+
Sbjct: 687 IRRIEAVAGPAVLAYLNERDQVVRALCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 746

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L LN  D        I +   +   + ++D+  L +  + LQ+K+  G ++L       
Sbjct: 747 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 806

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPNGNKADQA 888
           K S++   +  ++      D    + K +G       GGGGGRP++AQ+GG + +K  +A
Sbjct: 807 KVSLVAAFSPRVIK-----DKGLQAGKFIGAIAKICAGGGGGRPNLAQAGGRDASKLSEA 861

Query: 889 IAGVASFL 896
           +A   S L
Sbjct: 862 LAKAKSQL 869


>gi|153814718|ref|ZP_01967386.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756]
 gi|145847749|gb|EDK24667.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756]
          Length = 880

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 358/893 (40%), Positives = 523/893 (58%), Gaps = 54/893 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AIQ  W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVVGLDPN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY++D EAF++W K  G+ A++I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +D+D  K    H+ + +E+  G +Y  NN V+ RVI DH+RS +F+I+DGI+P+NEGR
Sbjct: 241 SIFDVDTIKALRDHVCRLAEKEYGEEY--NNDVSIRVITDHVRSVTFMISDGIMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG  +  +  L   +       YPEL + K  I   +  E+E+
Sbjct: 299 GYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKEEEQ 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  ++S + K E  ILNG+ AF+LYDT+G PLD+ ++IL  +GL  +D 
Sbjct: 359 FNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC-VDE 417

Query: 416 ISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F  ++E QR +AR A  +    G    ++ S+      ++F+GY+ L           
Sbjct: 418 DGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNV-TSEFVGYEHLT---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V  +  + EI +    G+   V   +TPFYA +GGQ  DTG  
Sbjct: 467 -------------WESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTGYI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ D  K   G   H  ++ +G++R+   +VL +D + R   + NHSATHLL 
Sbjct: 514 RTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHLLQ 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LGSHV Q GS +  D LRFD TH   +T  E+  +E  VN+ IA+   V  + M
Sbjct: 574 KALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIKNM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A  +GA AL G KY D VRVV++     G +S   CGGTHV++T EIM L IVSE+
Sbjct: 634 PIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVSET 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+T +    +    +EKLK+ A+ LK +  N+  ++  +  E + L  ++
Sbjct: 689 GVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHSEV 748

Query: 773 IHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+ Q    D+     ++  +  ++  I  VD   L+ + D L++K+  G+++L  
Sbjct: 749 ESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVLAS 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            S + K S++   T+  + +  +A +L +  A  + GGGGGGRP+MAQ+GG N
Sbjct: 809 GS-DSKVSLMATATDGAMKKGAHAGNLVKAIAGCV-GGGGGGRPNMAQAGGKN 859


>gi|269121339|ref|YP_003309516.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268615217|gb|ACZ09585.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 870

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 336/915 (36%), Positives = 535/915 (58%), Gaps = 71/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +F++FF+   H+   S+SLIP +D TL+ T +GMVPFK+ F G+++  ++ +TT 
Sbjct: 4   NEIRKSFIDFFKSKEHKYFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKEAPFKRITTY 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVG T RH TFFEMLGNFSFG YFK  AI  +W+ +T+   LD  +
Sbjct: 63  QKCIRT----NDLENVGVTTRHQTFFEMLGNFSFGDYFKREAIFWSWEYITEILKLDSEK 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V+ +D+EA+ +W K  G+  ++I+R+  +DN+W+    G CGPCSEI+ D GE + 
Sbjct: 119 LWVSVFLDDDEAYDIWNKEVGVPEERIVRLGEDDNWWAAGPIGSCGPCSEIYIDLGEKLG 178

Query: 185 GG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            G     PG   + +RY+EIWNLVF ++ +        LP+ +IDTG GLER+A V+Q+K
Sbjct: 179 CGNLDCKPGC--DCDRYLEIWNLVFTEWNRLEDGSLIPLPEKNIDTGAGLERIAAVMQKK 236

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            +N+D DLF  +I  +E++  ++ E NN  +   ++I DH+R+++FLI DG+LP+NEGRG
Sbjct: 237 ESNFDTDLFIPIINETEKI--LEVERNNKTDKALKIIADHVRAAAFLIGDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+LR+++RRA   A     R+    +  +  L+P +   M  AYPE+      IE+ ++ 
Sbjct: 295 YILRKLIRRAFGVASTIKERIFEKEDIFLYRLVPVVAEIMKEAYPEMESKIDYIEKVMKI 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F  TL  G+ +L   +  L KD  +    +++FKLYDT+G P ++ +++L    + 
Sbjct: 355 EEEKFTVTLKNGVEILKEEVEKLKKDGKDKFPSEISFKLYDTYGFPFELTKEVLEYEEIE 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +    F + LEEQ+ R+++    +     ++      EK+G T+FIGY          E
Sbjct: 415 -VSEDEFLEKLEEQKIRSKSSKETISDMIKDEFIDEFYEKHGKTKFIGY----------E 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           +++   +   I+ ++G S+                     E++FDQTPFYAE+GGQ+ DT
Sbjct: 464 EKEAKAKILHINKSHGSSN--------------------YEIIFDQTPFYAESGGQVADT 503

Query: 532 GCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSA 589
           G     D    ++ +V KK + +++H   + +GI+ +    L L ID   R+    NH+A
Sbjct: 504 GIINSQDLFEGKVVNVIKKKD-VYIHEVELIKGIIPKIGDELTLKIDKFKRKDTQRNHTA 562

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+LH AL  +LGSHV Q+GS +  + LRFD +H + ++  ++++IE   N I+ +N+ +
Sbjct: 563 THILHKALREVLGSHVEQSGSLVDSERLRFDFSHYEAVSPEQIEAIERIANQIVLENIEL 622

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
                + E A A GA AL G KY D VRVV +        S  LCGGTHV STGEI L+ 
Sbjct: 623 AVYNEDIETAKARGAMALFGDKYGDEVRVVEIPQ-----FSIELCGGTHVKSTGEIGLIN 677

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SES I +G+RRI A TG ++   +   +E  K LA  LKV +  +   VE++ E Y+ 
Sbjct: 678 IESESGIASGVRRITATTGYKSLDFVNTLEESQKELAKSLKVEEKKIKEAVEKLKESYKD 737

Query: 770 LQLIHAK---RKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSG 823
           L+  +     + L+  + DL  H I ++N    +I      D++ELK ++D ++ K++SG
Sbjct: 738 LEKDYNDLQMKFLKYEINDLMGH-IIEINGTKVLIKGFENKDNEELKEIVDRVKDKLKSG 796

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ L+G +    A  L  V++DL  +  A D+ +  +K+   G GGGRP  AQ+GG  G 
Sbjct: 797 VV-LIG-ANNGNAMFLAGVSKDLTGKIKAGDIVKEVSKI-ANGNGGGRPDFAQAGGKAGE 853

Query: 884 KADQAIAGVASFLKK 898
           K  +A+     +L++
Sbjct: 854 KVYEALEHGKRYLEE 868


>gi|239637575|ref|ZP_04678547.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596793|gb|EEQ79318.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 876

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 351/924 (37%), Positives = 518/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            +LY+T++ ED EA+K+W +  GL   +IIRI  N  FW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTIHPEDIEAYKIWNEKIGLEESRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGED 179

Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 FGKDDPEEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I   EQV+G  Y  NN   V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKNYLQNNDQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKSDFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+G +S    G  EI NG  AFKLYDT+G P+++ +++    
Sbjct: 354 IKSEEERFHETLEEGLSILNGFISQAKEGNQEI-NGKDAFKLYDTYGFPIELTEELATQE 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK     + F+GYD  
Sbjct: 413 GLT-VDMTTFETEMQQQRDRARQARQNSQSMQVQSEV-------LKNITTESHFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++Q GE V++A + + +  +   TPFYA 
Sbjct: 463 ---------------------TTDYQTELIHLIQNGEEVDKADAEETIYFMLKDTPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ D G    D   + +T+V K   G  +H   V+ G +     +  +++   RR +
Sbjct: 502 SGGQVADKGIVSNDHFEIAVTEVTKAPNGQNLHKGTVQFGQVNKGSEVDASVNKDERRSI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG HV+Q GS + P+ LRFD +H   +T  E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKEVLGEHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + MN ++A A GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WRGIDVRIQEMNIDEAKAMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVENTA 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    E+   +   +KV +   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQ 736

Query: 763 IWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           I +E + L  QL    +++      N+ED    ++  +N +  + +EVD   +K ++S M
Sbjct: 737 IQDEEKSLIKQLEQRDKEITSLKMGNIED----QVETINGLKVLATEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  +I+L   + + K S++  V +D  D+  A D+ +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTVIILAS-NVDDKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       +++  +  ++K
Sbjct: 851 MAQGGGTQPENITESLRFIKDYIK 874


>gi|307693255|ref|ZP_07635492.1| alanyl-tRNA synthetase [Ruminococcaceae bacterium D16]
          Length = 890

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 342/912 (37%), Positives = 522/912 (57%), Gaps = 54/912 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+++P    VTT
Sbjct: 9   LNELREMFLSFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPRHRVTT 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEF-DLD 121
            QKC+R G    D++N+G+T RH T+FEMLGNFSFG YFK+ AI  AW+ LT KE+  LD
Sbjct: 69  CQKCIRTG----DIENIGKTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSKEWVGLD 124

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY +V+        D+EAF++W +  G+ A++I +    DNFW    +GPCGPCSEI
Sbjct: 125 PERLYPSVFAGNETTPADDEAFRIWNEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           ++D+GE    G PG +   + +RYIE+WN+VF QF+   +     L + +IDTGMGLER+
Sbjct: 184 YYDRGEQWGCGKPGCTVGCDCDRYIEVWNVVFSQFDNDGENHYTELKQKNIDTGMGLERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A V Q   + +D+D   ++ +   ++TG  Y  ++   V+ RVI DH+RS++F+I DG+L
Sbjct: 244 ACVCQGVPSLFDVDTVMNITRKVTEITGASYGQSHATDVSLRVITDHIRSATFMICDGVL 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA  + +LLG  +P +  +   +  E    YPEL + +  I + +
Sbjct: 304 PSNEGRGYVLRRLLRRAARHGKLLGVNDPFLYTVCDTVIHENEGHYPELRERQDYITKVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLS-HLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R E+E F KT+D GL + + +LS H  K E   +G  AFKLYDT+G P+D+  +++  +G
Sbjct: 364 RVEEENFAKTIDGGLKIFNDMLSEHKAKGESTFSGADAFKLYDTYGFPIDLTLEMVEEQG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F++ ++EQR RAR     LG      + F   +    T+F+GYD        
Sbjct: 424 MK-LDEAEFHKQMDEQRQRARKAREALGDLGWAGVEFG--KDVPETEFVGYD-----HTA 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            +D KV+                 A+V + E  EE + G +  VV D+TPFYAE GGQ+ 
Sbjct: 476 IDDAKVV-----------------ALVVENEQAEEVMPGVEAIVVLDKTPFYAEMGGQVA 518

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG+  Q+TDVQK   G ++H   + +G+L+   ++   ID + R+ +   HSA
Sbjct: 519 DHGTISADGVTFQVTDVQKNKGGKYMHTGKLTQGVLKVGDTVSAAIDVKRRKAVMRAHSA 578

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL T+LG HV Q GS +  D LRFD TH   +T+ EL  +   VN+ + +   +
Sbjct: 579 THLLDKALRTVLGDHVHQAGSLVEEDRLRFDFTHFSALTAEELAKVSAMVNEAVLEGYDI 638

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T ++  E+A   GA AL G KY D VRVV +    G  +S   CGGTH+ +T ++ + +
Sbjct: 639 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDM----GEGYSVEFCGGTHLDNTAKVGVFH 694

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE S+ +G+RRIEA TGQ +   +    E L   A+ LK   G +  + E+   E + 
Sbjct: 695 ISSEFSVASGVRRIEATTGQASLDVMNRNQEMLFQAAAALKAKPGELREKAEQTMLEVKT 754

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +  K K + +  +         ++ ++  ++  I++ D+ +L+ + D L+ K  + +
Sbjct: 755 LHQMVEKFKAKESAGEADRFLFGARQVGELKVLTATIADADANKLRQMGDMLRDKAPNVV 814

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +L  ++ EK   + +   E +     A ++ + +   + GG GGG+P  A  GG +  K
Sbjct: 815 AVLATVNGEKITFLAVCGKEAVAKGIKAGEIIK-NVTAICGGKGGGKPDSAMGGGTDILK 873

Query: 885 ADQAIAGVASFL 896
            D A+A +  F+
Sbjct: 874 LDDALASIDDFV 885


>gi|16079794|ref|NP_390618.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310677|ref|ZP_03592524.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315000|ref|ZP_03596805.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319921|ref|ZP_03601215.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324202|ref|ZP_03605496.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|3122886|sp|O34526|SYA_BACSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2635186|emb|CAB14682.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 878

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 358/912 (39%), Positives = 531/912 (58%), Gaps = 62/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N+ +   +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +ERF +TL+ GL +L  ++    KD+   +++G   FKLYDT+G P+++ ++      + 
Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + + +QR RAR     +GS   +    +L++    + F+GY         K 
Sbjct: 417 -VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTVESTFVGYSQ------TKA 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           D  ++                  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+GD 
Sbjct: 468 DANIIV-----------------LLQDGQLIEEAHEGESVQIILDETPFYAESGGQIGDK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATH
Sbjct: 511 GYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV  
Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IV
Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +  Q
Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKDAQ 745

Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L NVE    LS  K  D VN ++  ++  D   L++++D L+ K+ S +I+
Sbjct: 746 RENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G  +  K ++   VT+DL+++  +A  L + +A+V  GGGGGGRP MAQ+GG    K 
Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863

Query: 886 DQAIAGVASFLK 897
           ++A+A V  ++K
Sbjct: 864 EEALASVEDWVK 875


>gi|229013606|ref|ZP_04170737.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228747665|gb|EEL97537.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 880

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S V A+V+ GE  +   + ++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQADEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVAI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|229098860|ref|ZP_04229796.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229117885|ref|ZP_04247247.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665542|gb|EEL21022.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684533|gb|EEL38475.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 880

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHKGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S + A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L    ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESINVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +LV ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLVSVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|310778164|ref|YP_003966497.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309747487|gb|ADO82149.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 868

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 350/899 (38%), Positives = 530/899 (58%), Gaps = 60/899 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF++  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     V T 
Sbjct: 5   NEIRQRFVEFFKEKEHKHYESASLIP-DDPTLLLTVAGMVPFKPFFLGQKEAPNSRVVTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVG+T RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L++ +
Sbjct: 64  QKCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFITEVLGLEKEK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           ++I+V+  D+EA K+W +   +  ++I+R+   DN+WS   TG CGPCSEI+ D G    
Sbjct: 120 MWISVFTTDDEAEKIWIEKCNIPKERIVRLGEEDNWWSAGPTGSCGPCSEIYVDMGIEYG 179

Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           G     PG  E  +R++EIWNLVF ++ ++       LPK +IDTG GLER+A+V+Q+K 
Sbjct: 180 GDENSKPGDPEADDRFLEIWNLVFTEWNKKEDGTLEPLPKKNIDTGAGLERIASVVQKKI 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGY 299
           NNY+ DL   +I+ + ++T  +Y      +   +VI DH+R  SFLI DG+LP+NEGRGY
Sbjct: 240 NNYETDLILPIIEEAGRLTSSEYGKTEKTDFSLKVIADHIRGISFLINDGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + RLLG +E  +  L+  +   M  AYPE+++    I++ ++ E+E+F 
Sbjct: 300 VLRRVLRRAVRHGRLLGTSENFLYKLVDKVVEIMKGAYPEILENMEHIKKIIKIEEEKFS 359

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL +G+ +++  +    +  +  L+G++ FKLYDT+G P ++ ++I C      + +  
Sbjct: 360 HTLGQGMQMVNDEIEKAKESGENKLSGEITFKLYDTYGFPYELTEEI-CEEKDVEVYLEE 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +EEQ+ RAR+    +     +       +KYG T F GY+ L+             
Sbjct: 419 FTAKMEEQKKRARSAREVVMEKGQDSFVEEFYDKYGKTVFEGYEKLQN------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                          K+IV   E ++E     KV ++F++TP YAE+GGQ  D G    D
Sbjct: 467 ---------------KSIVYHVENIDE----NKVMLIFNKTPLYAESGGQASDHGTVTAD 507

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G++ +I DVQK+ E IF+H  +V+ G  +L+  + + LT+D + RR +  NH+ATHLLH 
Sbjct: 508 GLKGKIIDVQKQKE-IFMHTVVVDEGMDLLKKGLEVTLTVDDERRRDIMRNHTATHLLHK 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LGSHV Q GS +  D LRFD TH + +T  +L+ +E  VN  I +N  +  + M 
Sbjct: 567 ALKDVLGSHVQQAGSLVDADRLRFDFTHYEAVTRDQLEEVEKIVNRQIFKNTSLKVQHMT 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  SG+ AL G KY D VRVV+V       +SS LCGG HV  TGEI L  I++E+ 
Sbjct: 627 LDEAKESGSTALFGDKYGDLVRVVNVP-----GYSSELCGGIHVDRTGEIGLFNILTETG 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG RRIEA TG  +   +   +  + S++  LK    ++  ++E+  E +R+   +L 
Sbjct: 682 VAAGTRRIEATTGVASYKTVNQMERLILSVSDALKTDPKHLEEKIEKTIEAFRETNKELE 741

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGI 830
             K KL     +     I ++N +  +I   + KE   L+ ++D  + K+ S II+L G 
Sbjct: 742 ALKSKLASYEANSLFDNIEEINNVKVLIKAFEGKEAGSLREIVDKAKDKLGSCIIVL-GT 800

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E KA   + VT+DL+ +  A DL +  AK+  GG GGGRP  AQ+GG +G K  +A+
Sbjct: 801 DNE-KAVFAVGVTKDLMSKVKAGDLVKEIAKI-AGGNGGGRPDFAQAGGKDGKKVPEAL 857


>gi|317500249|ref|ZP_07958478.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087517|ref|ZP_08336451.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316898345|gb|EFV20387.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406269|gb|EGG85786.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 880

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 358/893 (40%), Positives = 523/893 (58%), Gaps = 54/893 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AIQ  W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVVGLDPN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY++D EAF++W K  G+ A++I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +D+D  K    H+ + +E+  G +Y  NN V+ RVI DH+RS +F+I+DGI+P+NEGR
Sbjct: 241 SIFDVDTIKALRDHVCRLAEKEYGEEY--NNDVSIRVITDHVRSVTFMISDGIMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG  +  +  L   +       YPEL + K  I   +  E+E+
Sbjct: 299 GYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKEEEQ 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  ++S + K E  ILNG+ AF+LYDT+G PLD+ ++IL  +GL  +D 
Sbjct: 359 FNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC-VDE 417

Query: 416 ISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F  ++E QR +AR A  +    G    ++ S+      ++F+GY+ L           
Sbjct: 418 DGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNV-TSEFVGYEHLT---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V  +  + EI +    G+   V   +TPFYA +GGQ  DTG  
Sbjct: 467 -------------WESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTGYI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ D  K   G   H  ++ +G++R+   +VL +D + R   + NHSATHLL 
Sbjct: 514 RTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHLLQ 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LGSHV Q GS +  D LRFD TH   +T  E+  +E  VN+ IA+   V  + M
Sbjct: 574 KALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIKNM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A  +GA AL G KY D VRVV++     G +S   CGGTHV++T EIM L IVSE+
Sbjct: 634 PIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVSET 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+T +    +    +EKLK+ A+ LK +  N+  ++  +  E + L  ++
Sbjct: 689 GVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHSEV 748

Query: 773 IHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+ Q    D+     ++  +  ++  I  VD   L+ + D L++K+  G+++L  
Sbjct: 749 ESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVLAS 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            S + K S++   T+  + +  +A +L +  A  + GGGGGGRP+MAQ+GG N
Sbjct: 809 GS-DGKVSLMATATDGAMKKGAHAGNLVKAIAGCV-GGGGGGRPNMAQAGGKN 859


>gi|195953907|ref|YP_002122197.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933519|gb|ACG58219.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 856

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 328/905 (36%), Positives = 514/905 (56%), Gaps = 67/905 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+  GH ++ SSS++P +DPTL+F N+GMVPFKN+F G E   Y+  T+ QK
Sbjct: 6   IREKFLSFFENKGHTVVKSSSIVPKSDPTLLFVNAGMVPFKNVFLGLESLPYKRATSCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C R  GKHNDL++VGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L + ++Y
Sbjct: 66  CFRVSGKHNDLESVGRTTRHHTFFEMLGNFSFGDYFKKEAILYAWEFVTEVLRLPKDKIY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V+  D+EA+ +WK +  +  DKI R+   DNFW M ETGPCG  SEI+ D+GE     
Sbjct: 126 VSVHQNDQEAYDIWKDMVKVPEDKIWRMGDEDNFWQMGETGPCGYSSEIYIDRGE----- 180

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                 + ERY+EIWNLVFMQF +        L K SIDTGMGLER+A+V+Q K +N++I
Sbjct: 181 ---KYSQDERYLEIWNLVFMQFNKDESGHMEPLAKPSIDTGMGLERIASVIQGKDSNFEI 237

Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D+   +I   E ++  +Y+ +    +  RVI DH R+ +  I++GI+P+NEGRGYV+R++
Sbjct: 238 DIIMPIIHFVEDLSSKRYKTDEETDIAMRVIADHSRACTVAISEGIIPSNEGRGYVVRKV 297

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +   +G  E  +   +  +   + +AYPEL  +K  ++  +++E+ RF +TL+ 
Sbjct: 298 LRRAVRFGYKIGIKEEFLYKSIDVVVDTLKNAYPELEMSKEFVKNIIKAEESRFLETLEN 357

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
            L L D  ++   K  +++GD  FK YDT+G PLDI+Q++   +G+  +D+  F + LE+
Sbjct: 358 SLELFDRYIAE-NKSNVISGDFIFKAYDTYGFPLDILQEMTHEKGMT-LDMKGFYELLEK 415

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q+  +R H         ++++ S+K+K   + F GY         +E  KVL        
Sbjct: 416 QKEESRKHF--KSEEKVDEVYLSIKDK-ARSIFTGY------THTEEQAKVLF------- 459

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                     I++ G++ EE    +   ++ ++TPFY E GGQ+GD+G          + 
Sbjct: 460 ----------IIKDGKMTEELKEQEDGIIILNKTPFYPEKGGQIGDSGILENSEALFIVN 509

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           D +   +G+  H   V +G LR    ++  ID + R  +  +H++THLLH AL  + G  
Sbjct: 510 DTKTPTDGVIAHIGKVIKGRLRVGTDVLAKIDKERREDIKRHHTSTHLLHAALRNMFGES 569

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q GS +  + LRFD T  + +   EL+++E  +N+ I +N  +  + +  ++AI +GA
Sbjct: 570 VRQAGSYVGDEFLRFDFTFYRSLKPEELEALEAMINEEIMKNEEIFVKELPYQEAIKTGA 629

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            A+   KY D VRV+S      G  S  LCGGTHV  TG+I    ++SESS+ AGIRRI 
Sbjct: 630 IAIFEEKYGDVVRVIS-----AGDFSKELCGGTHVKRTGDIGYFKLISESSVGAGIRRII 684

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAK---- 776
           A  G++A        + LK++   +  ++ N++ RV    EE+ E+  ++Q++ +K    
Sbjct: 685 AKAGRKAVREAYEDSKLLKTIYQEIGANKQNLLERVIALKEELKEKDNQIQMLKSKLVRL 744

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             K  LN+E     +I  +     I+ E     L+ + D+ ++   + + +   +SK  K
Sbjct: 745 EAKASLNIE-----QINGIKLYWGILEEASLDNLREIADSYRQHPNTVVFL---VSKSPK 796

Query: 836 ASVLIVVTEDLLDRFNAV--DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            S+LI  ++DL     A+  D+A+        G GGGR  +AQ G       + A+  + 
Sbjct: 797 KSILIARSKDLNYDMKAIIKDIAKPME-----GSGGGREDLAQGGVQKIETFNSALEVLK 851

Query: 894 SFLKK 898
           S L K
Sbjct: 852 SILSK 856


>gi|167767297|ref|ZP_02439350.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1]
 gi|167711272|gb|EDS21851.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1]
          Length = 868

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/899 (39%), Positives = 509/899 (56%), Gaps = 48/899 (5%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           +LEFF+  GH  L S SL+P ND +L+  N+GM P K  FTGQE P    VTT QKC+R 
Sbjct: 2   YLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTTCQKCIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   LD  RLY +VY
Sbjct: 62  G----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVIGLDPDRLYPSVY 117

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
           ++D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G P  
Sbjct: 118 EDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPDC 176

Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
           +   + +RY+E+WN VF QFE         L   +IDTGMGLER+A V+QE  + +D+D 
Sbjct: 177 TVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVVVQEVDSIFDVDS 236

Query: 249 FKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
            K +     +V G+ Y  ++   V+ RVI DH+RS++F+++DGI P+NEGRGYVLRR++R
Sbjct: 237 IKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSNEGRGYVLRRLIR 296

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RA  + RLLG     +  +   +  E    YPEL +    I   L  E+++F KT+D+GL
Sbjct: 297 RAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQEEKQFNKTIDQGL 356

Query: 367 VLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            +L   +  ++  G  E+   D AFKLYDT+G PLD+  +IL  +G   +D   F + ++
Sbjct: 357 SILADMEKAMNEKGSKELAGAD-AFKLYDTYGFPLDLTIEILEEKGFT-VDKEGFEKEMQ 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR  ARA          +   +   +    T+F+GYD L             C+     
Sbjct: 415 VQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL------------TCEGE--- 459

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   + A+  + E+V     G K  +V DQT FYA +GGQ  D G  I      ++
Sbjct: 460 --------ITAMTTETEVVSTLNKGDKGTIVADQTAFYATSGGQEADKGVIISGDASFEV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K + G F H   V  G        V T++ +NR   + NHSATHLL  AL  +LG+
Sbjct: 512 EDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHLLQKALREVLGT 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS    + LRFD TH  P++  E+  +E  VN+ IAQ+LPVVT++M+ E+A  +G
Sbjct: 572 HVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTKVMSMEEAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVVS+     G  S  LCGGTHV +TG I    I+SE+ + +G+RRI
Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILSETGVASGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+T Q   ++   Q+E+LK  A  LK +   ++ R+E +  E ++L+  +   K +L  
Sbjct: 687 EAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKSENESLKSKLAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        ++  V  ++  I +VD   L+ + D L++K+  G+I+L      K   V
Sbjct: 747 DALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVLASQKDGKVFLV 806

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +V  E      +A +L +  A  + GGGGGGRP+MAQ+GG N     +A+A V   L+
Sbjct: 807 AMVTDEAQKAGAHAGNLIKAIAGCV-GGGGGGRPNMAQAGGKNPAGIPEAVAKVKEILE 864


>gi|269216088|ref|ZP_06159942.1| alanine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269130347|gb|EEZ61425.1| alanine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 901

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 353/922 (38%), Positives = 512/922 (55%), Gaps = 73/922 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF--TGQEKPVYQA 60
             + IR  +L FF++ G + LPSSSLIP +DP+L+ T++GMV FK  F    +  P Y  
Sbjct: 23  TTAEIREKYLRFFEEKGCKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPNYIG 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFK      A++  T+  +L
Sbjct: 82  ATTVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGVYFKHEMCTWAYEFSTEVLEL 137

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+++D+E  ++WK + G+    I R+  +DNFW    TGPCGPCSEI+FDQG
Sbjct: 138 PKDRLYFTVFEDDDETIEIWKSL-GVLESHITRLGEDDNFWRAGPTGPCGPCSEIYFDQG 196

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G  PG  ++G+R++E WN VF QF+ Q       LP  +IDTGMGLERMA ++Q  
Sbjct: 197 PDFEGDAPG--DDGDRFLEFWNCVFTQFDGQEDGTLAPLPTKNIDTGMGLERMAAIMQGV 254

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH------------RVIVDHLRSSSFLIAD 288
            +NY+ D+ + L+   E+++G  Y G                  R+  DH RS +F+IAD
Sbjct: 255 QSNYETDVLRDLVAVGERLSGASYRGGTNATAGDGAQAKVDLSLRICADHSRSVAFMIAD 314

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GILP+NEGRGYVLRR++RRA+ +   LG   P +   L  +   MG  YPE++  + L+E
Sbjct: 315 GILPSNEGRGYVLRRLLRRAVMHGHKLGIEGPFLGEYLAKIIELMGDVYPEIVDNRELVE 374

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             + SE+ERFG+TL  G   L   LS L    +L G  AF L+DT+G P+++ ++I C+ 
Sbjct: 375 RIILSEEERFGRTLRTGQAYLVDELSAL-DGSVLPGQTAFTLHDTYGFPIELTEEI-CSE 432

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--------LKEKYGATQFIGY 460
               +D   F+  +EEQRSRARA +     G  E  W +        LKE  GA  F+GY
Sbjct: 433 SGVTVDHAGFDACMEEQRSRARAAT----KGDAEAAWSTYGGVHAETLKE-VGANIFVGY 487

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +                       T   SSIV A+++ G  V     G++ E+V  +TPF
Sbjct: 488 EH----------------------TEAASSIV-ALIKDGARVARIEQGEEAELVLAKTPF 524

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GG++GDTG   G G   Q+ D +    G+  H   V +G L     +   +D   R
Sbjct: 525 YAEMGGEVGDTGTIEGAGGYAQVEDTKAPEAGLICHRVKVVKGSLSVGEDVAAAVDADRR 584

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            +++ NH+ATH+LH AL  +LG HV+Q GS + PD LRFD  H  P+T+ E+K +ED  N
Sbjct: 585 ARITRNHTATHILHAALRQVLGDHVNQAGSYVGPDRLRFDFAHFAPMTADEIKQVEDLAN 644

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +I     +     + ++A ASG  AL G KY D VRVV     + G  S  LCGG HV 
Sbjct: 645 AVIMSATDMNIYETSLDEARASGVTALFGEKYGDTVRVV-----EAGGFSRELCGGCHVR 699

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T EI LL +V+E+S+ A  RRIEA+T   A  +L  +  +L + AS LK +  +V  RV
Sbjct: 700 NTAEIGLLKVVAETSVAANTRRIEAVTSYAALDYLNTRAAELDAAASALKSAPLDVAARV 759

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVE-DLSCH--KIADVNFMSHII--SEVDSKELKSVMDA 815
                  ++ +   A+R  Q   E D S +   + DV +   +I    +D   +++V D 
Sbjct: 760 AANLATIKEFE-AEARRAKQAAAESDASAYLDAMVDVGYPLIVIRVDGLDGGAMRNVWDV 818

Query: 816 LQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++ ++ + G ++L  ++  K   +     E +   FNA D+ + ++  +  GGGGG+P M
Sbjct: 819 VRARMPKPGALVLGAVTDGKPIIMAAASDEAVAAGFNAKDVIKQASSHI-KGGGGGKPTM 877

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ+GG + +  D A+    +FL
Sbjct: 878 AQAGGKDASGMDAALEAARAFL 899


>gi|86148968|ref|ZP_01067200.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597061|ref|ZP_01100297.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562159|ref|YP_002343938.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|20532267|sp|Q9PI05|SYA_CAMJE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85840326|gb|EAQ57583.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190750|gb|EAQ94723.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359865|emb|CAL34653.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315927005|gb|EFV06360.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 842

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 350/888 (39%), Positives = 512/888 (57%), Gaps = 64/888 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+
Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ 
Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + E
Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++RA+A   G G  T    + +L EK+G   F+GY+            K  C+   + L
Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            +     V  +   G             V+ + TPFYA +GGQ  D+G       + ++ 
Sbjct: 465 LDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508

Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D QK      ++ + ++ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782
           EA+  + A   +  Q E+L  +   LK    +++  ++++  E   L+  +    K +L+
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +++   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK     I +
Sbjct: 738 SKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784

Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 785 AAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|154483551|ref|ZP_02025999.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC
           27560]
 gi|149735461|gb|EDM51347.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC
           27560]
          Length = 886

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 346/906 (38%), Positives = 525/906 (57%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH ++ S SL+P ND +L+  N+GM P K  FTGQE P    V T
Sbjct: 13  LNELRKMFLDFFESKGHLVMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRTRVAT 72

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L+  
Sbjct: 73  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLEAD 128

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ A++I +    DNFW     GPCGPCSEI++D+G   
Sbjct: 129 RLYPSVYLEDDEAFDIWNKEMGIPAERIFKFGKEDNFWEHG-AGPCGPCSEIYYDRGAKY 187

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RYIEIWN VF QFE         L + +IDTGMGLER+ATV+Q+  
Sbjct: 188 GCGKPGCTVGCECDRYIEIWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLATVVQDVD 247

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++   +Y  E    V+ R++ DH+RS++F+I+DGI+P+NEGRGY
Sbjct: 248 SIFDVDTIKALRDKVCELANKEYKKEYKWDVSIRIVTDHIRSATFMISDGIMPSNEGRGY 307

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     +  L   +       YPEL + K +I + L  E+ +F 
Sbjct: 308 VLRRLIRRAARHGKLLGIDGRFLSTLSETVIESSKDGYPELEEKKSMIFKVLSEEENKFN 367

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L  +   + K+    L+G+ AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 368 KTIDTGLNILADMEEEMKKNNQTQLSGENAFKLYDTYGFPLDLTEEILEEKGF-GVDEDG 426

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+E QR +AR+          +   +   +K   T+F+GYD L              
Sbjct: 427 FKEAMEVQRKKARSARKKTNYMGADATVYEQLDKALTTKFVGYDKLISD----------- 475

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       ++V A+  + E+V+  V G K  +V ++TPFY   GGQ+GD G  + +
Sbjct: 476 ------------TVVTALTTEKEVVQALVDGDKGTIVTEETPFYGTMGGQVGDKGIIVTN 523

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G   ++ +      G   H   V +G+++      + +D   R   S NHSATHLL  AL
Sbjct: 524 GGEFKVEETIHLLGGKIGHVGTVVKGMIQVGDKATMKVDSAFRADTSKNHSATHLLQKAL 583

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG HV Q GS +  D LRFD TH + +T  E++ +E+ VN+ IA  L V+T+ M+ +
Sbjct: 584 KTVLGEHVEQAGSYVDADRLRFDFTHFQAMTKEEIEKVENLVNEQIATGLDVITKEMSLD 643

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVVS+     G +S  LCGGTHVS+T  I    I+SES + 
Sbjct: 644 EAKETGAMALFGEKYGEKVRVVSM-----GDYSIELCGGTHVSNTNVISSFKIISESGVA 698

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T      H    +  L   A   K     +V +++ +++E ++L   + K 
Sbjct: 699 AGVRRIEALTSTGLMKHYKESENVLNQAAKLAKSEPVALVEKIQALYDEIKELSKENEKL 758

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  E +        ++  V  ++  +  V   EL+++ D L++K+  G++++V  ++
Sbjct: 759 KAKLANEAVGDVLSQVVEVKGVKLLATHVEGVGMNELRNLGDQLKEKMGGGVVVIVS-TQ 817

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + KA+V+++  ED + +  +A ++ +  AK++ GGGGGGRP+MAQ+GG N   A  A+  
Sbjct: 818 DGKANVIVMADEDAISKGAHAGNMIKEIAKLV-GGGGGGRPNMAQAGGKNPAGAKDAVEA 876

Query: 892 VASFLK 897
             + L+
Sbjct: 877 AKTILE 882


>gi|296333167|ref|ZP_06875620.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675327|ref|YP_003866999.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149365|gb|EFG90261.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413571|gb|ADM38690.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 878

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 358/912 (39%), Positives = 530/912 (58%), Gaps = 62/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    DQ
Sbjct: 67  QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDQ 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N+ +   +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATETISGEIYGTDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMYDLVPVVAEIMADFYPEVKEKSDFIAKVIKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +ERF +TL+ GL +L  ++    KD+   +++G   FKLYDT+G P+++ ++      + 
Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + + +QR RAR     +GS   +    +L++    + F+GY         K 
Sbjct: 417 -VDHKGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQ------TKA 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           D  V+                  ++Q G+ ++EA  G+ V+++ D+TPFYAE+GGQ+GD 
Sbjct: 468 DANVIV-----------------LLQDGQFIDEAHEGESVQIILDETPFYAESGGQIGDK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATH
Sbjct: 511 GYLRSEQAIVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSSVIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV  
Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IV
Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GGYSLELCGGCHVRNTAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E ++ Q
Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQAADELKTNIKEVPKRVAALQAELKEAQ 745

Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L NVE    LS  K  D V  ++  ++  D   L++++D L+ K+ S +I+
Sbjct: 746 RENDTLLAKLGNVEAGAILSKVKEVDGVRVLAEKVNAKDMNHLRTMVDELKAKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G  +  K ++   VT+DL+++  +A  L + +A+V  GGGGGGRP MAQ+GG    K 
Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863

Query: 886 DQAIAGVASFLK 897
           ++A+A V  ++K
Sbjct: 864 EEALASVEDWVK 875


>gi|217077683|ref|YP_002335401.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037538|gb|ACJ76060.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 859

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 357/901 (39%), Positives = 537/901 (59%), Gaps = 55/901 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FLEFF+K GH++LPS+SLIP  DP L+FT +GMVPFK IF G+  PVY  + T Q
Sbjct: 5   EIRRLFLEFFEKKGHKILPSASLIP-EDPQLLFTIAGMVPFKPIFWGKVDPVYTRIATCQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ +T+   + + RL
Sbjct: 64  KCVRT----TDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFVTQVLKIPEERL 119

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIP 184
           +I+VY +D EA+++W+KI G+ + KI+++   DNFW  A  TGPCGP +EIF+D    +P
Sbjct: 120 WISVYKDDNEAYEIWRKI-GVPSSKILKLGKEDNFWGPAGPTGPCGPDTEIFYDTQRDVP 178

Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G  P  +    R++EIWNLVF +F Q        L + +IDTG GLER+A ++Q   
Sbjct: 179 TSDGKEPTPANTEGRFVEIWNLVFTEFYQDENGNLLPLKRKNIDTGAGLERVAAMMQGVY 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NN+D DLF  +I+    +  ++Y+ +    V+ RVI DH+R+  FLI+DG+ P+NEGRGY
Sbjct: 239 NNFDTDLFAPIIEGICNILNVEYKKDEKIDVSIRVIADHIRALVFLISDGVFPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  + +LLG   P +  L+  +  +MG+ YPE+++ K   +E +  E++RF 
Sbjct: 299 VLRRILRRAARHGKLLGANAPFLHKLVDFVVNKMGNVYPEIVEKKEFTKEIILGEEKRFL 358

Query: 360 KTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           + L++GL L++ V+  + GK   ++G++AFKLYDT+G PLDI++D+    G   +D   F
Sbjct: 359 QNLNKGLELVEKVVRENNGK---ISGEMAFKLYDTYGFPLDILRDLAEENGYV-LDEQGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N+ +E+QR  A++ + G    T    +  LK K   ++F+GY+        +E  KVL  
Sbjct: 415 NEYMEKQRLLAKSAA-GDVEFTKRTGYEDLKLK---SEFVGYEK------YEEYSKVLA- 463

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                            ++  E V EA      E+V ++TPFYAE GGQ+ DTG   G+ 
Sbjct: 464 -----------------IKVSEFVNEAQDAD-CEIVLERTPFYAEKGGQVSDTGIIKGEN 505

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +  V    EGI VH   + +G L     +   ID + R+  + NH+ATHLLH AL 
Sbjct: 506 GEFLVEYVYSPTEGIIVHRGKL-KGRLSVGEKVYAKIDIEKRKATARNHTATHLLHAALR 564

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV Q GS +  + LRFD TH   ++  E++ +E  VN++I + + V+    + ++
Sbjct: 565 KVLGTHVRQAGSLVESEKLRFDFTHFNALSVDEIEQVEKMVNNVILEAIDVIVEEKDYDE 624

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA AL   KY D+VRVV V     G  S  LCGGTHV +TGEI L  IVSE S+ A
Sbjct: 625 AVKEGAMALFEEKYGDKVRVVKV-----GNFSEELCGGTHVKNTGEIGLFKIVSEGSVSA 679

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKR 777
           GIRR+EAITG  +  +L   +     +   L+V+   V  R+E + EE +KL   I + +
Sbjct: 680 GIRRVEAITGLNSLMYLQRLENNWLKVRKVLEVNDEEVFRRIENMKEEIKKLNSEIKSLK 739

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           +  ++++ +  +K   +N + +I+ + +  E+  + D   + +  G+ ++V   K  +  
Sbjct: 740 QKMVDIDSIYKNKKV-INNVEYIVEKFEGLEVDVLRDLADRLVDKGVDLVVLFDKVGEKV 798

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +LIV  +      +A ++A+  +KVL GGGGGGRP  AQ+GG +  K  +AI  +   L+
Sbjct: 799 ILIVKKKKSNQLLHAGNIAKELSKVL-GGGGGGRPDFAQAGGKDFGKVQEAIKKLEEILR 857

Query: 898 K 898
           +
Sbjct: 858 E 858


>gi|329943212|ref|ZP_08291986.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|313848364|emb|CBY17368.1| putative alanyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325507370|gb|ADZ19008.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328814759|gb|EGF84749.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328915050|gb|AEB55883.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 875

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 333/878 (37%), Positives = 501/878 (57%), Gaps = 50/878 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H ++ SS + P NDP+++FTN+GM  FK+IF  +E   Y   TT 
Sbjct: 4   NTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+ D  R
Sbjct: 64  QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFDPDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW++   L +++I R+T  DNFWSMAETGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWER--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGEQFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ +++      
Sbjct: 182 KAASPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGTDTV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ + LI  +E+++G KY  +  +    RVI DH+RS SF IADG++P N  RGYVL
Sbjct: 242 FEADVLRLLISKTEELSGKKYHPDEALGAAFRVIADHVRSLSFAIADGLIPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RR++ Y + LG+T+P +  ++PAL   MG AYPEL  +   I+E +  E+E + K+
Sbjct: 302 RKILRRSVNYGKRLGFTKPFLAEIVPALVDAMGEAYPELRLSASQIQEVMTIEEENYFKS 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL       I++G+ AFKL DT+GLPLD +  +L       +D+ +F Q 
Sbjct: 362 LHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIA-LLAKDYDFSVDLDTFYQL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
            +E + R+R  ++     TT+ ++ SL     +T F+GY+ L    F             
Sbjct: 421 EKEAKERSRK-NIAKSHNTTDTVYDSLSLGENST-FVGYNDLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538
                     ++AI++ GE V      +K  ++  +TPFYAE GGQ+GD+G   C+ G  
Sbjct: 466 ----------IEAIIKDGEQVPYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSDGTF 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   ++       GI +HH  V +G L    ++   +    R+ +S NH+  HLLH AL 
Sbjct: 516 V---VSHTTSPKAGIVIHHGEVSQGQLCPAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR  +  D
Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREASYSD 632

Query: 659 AIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            + S       G KY+D VRVVS  +      S  LCGGTH   TG++    I+ E ++ 
Sbjct: 633 VMNSKEIKQFFGDKYSDIVRVVSAGF------SHELCGGTHAEFTGDLGCFRILKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIH-A 775
            GIRRIEA+TG+ A        + L  +A  L+  +  ++ +++ I +E + + +LI   
Sbjct: 687 TGIRRIEAVTGKEAEVLARQDTQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746

Query: 776 KRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + KL  ++ D     C ++ DV++  H + E +S  L+   + L +KI + ++ L    K
Sbjct: 747 ENKLIYSLLDKVIDRCQQVEDVSYFIHHLPESESHRLQQYANCLHQKIPARLVSLWTTQK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
             K  +   +++DL+ +   A DL ++     GG  GG
Sbjct: 807 NGKYIIFSRISDDLVKQGLQAKDLLKILLTPCGGRWGG 844


>gi|260654150|ref|ZP_05859640.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260631135|gb|EEX49329.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 879

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 359/902 (39%), Positives = 516/902 (57%), Gaps = 61/902 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F++F+   G    PS SL+P +DP+L+FT +GMVPFK  + G E+P  ++  T QK
Sbjct: 6   IRRKFIDFWVSKGAHHFPSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPPVKSAVTSQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVG T RHHTFFEMLGNFS+GGYFK  ++   W+ LT+   LD  R+Y
Sbjct: 65  CVRT----NDIENVGHTARHHTFFEMLGNFSWGGYFKHESLTWGWEFLTQVIGLDGSRMY 120

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183
            T+Y +DEEA+K+W    GL+ D I+R    +NFW M   GPCGP SEI +DQGE   C 
Sbjct: 121 ATIYKDDEEAYKVWHDEIGLADDHILRCGEEENFWFMGPQGPCGPDSEILYDQGEKFSCG 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   PG   + +RY+EIWN VF QF++Q       LP+ +IDTGMGLER+ +++Q  TN+
Sbjct: 181 PNCHPGC--DCDRYLEIWNHVFTQFDRQEDGSMLPLPRKNIDTGMGLERLTSLVQGVTND 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYV 300
           ++ DLF  LI+    ++G+ Y G++       +VI DH+RS  F++ADGILP+NEG GYV
Sbjct: 239 FETDLFLPLIRKVTDLSGVAY-GSSAAGDLALKVISDHIRSVCFMLADGILPSNEGPGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ Y RL+G   P +  LLP + +EM   Y EL +++L I + +  E+ RFG+
Sbjct: 298 LRRLLRRAVRYGRLIGIDRPFLNDLLPVVVSEMSDPYAELAESQLTIRQIIDVEENRFGR 357

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL +G  LL+  +    K   + L GDVAF+LYDT+G PL++  +I   + L  +D   F
Sbjct: 358 TLSQGCALLNDEIDRAVKAGSKTLAGDVAFQLYDTYGFPLELTTEICSEKNLT-VDESEF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +Q+ RAR  S  +G   T   + +L+ + G   F+GYD L  S            
Sbjct: 417 KAQMTQQKDRARKASKQVGVVITGDAFTALQNRLGTVPFVGYDALSSS------------ 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S +  +V  G +V+   +GQ  + V   TPFYAE GGQ+GDTG      
Sbjct: 465 -----------SQIVGLVCDGALVDRLETGQSGQAVVTPTPFYAERGGQVGDTGTLTAVR 513

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +T    +A  + V    V  G L T+  +  ++D + R  ++ NH+ATHLLH AL 
Sbjct: 514 TEAAVTGCFYRAGDLSVLDITVNSGALETDQFVTASVDKERRAAITRNHTATHLLHQALI 573

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV QNGS ++P+ LRFD TH + +T  +++ +E   N  +  N+PV T  MN  D
Sbjct: 574 DVLGGHVRQNGSLVSPEFLRFDYTHFEAMTPEQIRQVETLANRKVLANMPVDTEQMNLAD 633

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL   KY D VRVVS      G  S  LCGGTHV +TGEI L+ IVSE SI +
Sbjct: 634 AKAKGAKALFEEKYGDVVRVVSA-----GDFSCELCGGTHVGATGEIGLVKIVSEESIGS 688

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+ A+TG  +          L++LA    V    VV +V  + +E ++L      R+
Sbjct: 689 GVRRLTAVTGMNSYDMFDKASSALRTLAQKFNVRPEGVVEQVVALEQENKEL-----ARQ 743

Query: 779 LQLNVE-DLSCH--------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           L   V+ DL+          ++      S  I  V    ++   D ++ K    +++ +G
Sbjct: 744 LADKVKSDLAGRLDGGIARTELDGCCLCSARIDGVPMDMMREAGDRVKDKEPRSVVVFMG 803

Query: 830 ISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++E K  +L +V  E L   ++A  + +  A ++ GGGGGGRP MAQ+GG +  K DQA
Sbjct: 804 QTEEGKVQILCMVGAEALKAGYHAGKIVKALAGLV-GGGGGGRPDMAQAGGRDCAKIDQA 862

Query: 889 IA 890
           +A
Sbjct: 863 LA 864


>gi|157414790|ref|YP_001482046.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205830015|sp|A8FKT2|SYA_CAMJ8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157385754|gb|ABV52069.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747428|gb|ADN90698.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931702|gb|EFV10657.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 842

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/893 (39%), Positives = 517/893 (57%), Gaps = 74/893 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEFLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175

Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               SSE+     G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K
Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N+D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYV
Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  
Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T++ G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F  
Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RA+A   G G  T    + +L EK+G   F+GY+            K  C+  
Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            + L +     V  +   G             V+   TPFYA +GGQ  D+G       +
Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLKNTPFYATSGGQSADSGFM----AK 504

Query: 541 LQITDVQKKAEGIF-VHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ D QK     F ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL 
Sbjct: 505 REVLDTQK----FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALR 560

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILGSHVSQ GS +  + LRFD TH K ++  EL++IE  VN++I  +   +   M  E+
Sbjct: 561 EILGSHVSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEE 620

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + A
Sbjct: 621 AKKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSA 674

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKR 777
           G+RRIEA+  + A   +  Q E+L  +   LK    +++  ++++  E   L+  +    
Sbjct: 675 GVRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSS 732

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           K +L+ +++   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK   
Sbjct: 733 KTELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK--- 781

Query: 838 VLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             I +   + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 782 --ITLAAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|19704032|ref|NP_603594.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|22096188|sp|Q8RFJ8|SYA_FUSNN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19714224|gb|AAL94893.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 867

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 344/909 (37%), Positives = 529/909 (58%), Gaps = 66/909 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +++ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGNYFKKEAIKWSWEFVTEVLKINKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-IQY 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+Q K
Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           TNN++ DL   +++ + ++TG +Y  N   N   +VI DH R+ +FL+ DG++P+NEGRG
Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEIAYPDLRKNVENIRKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  + +L   GK++ L+G+++FKLYDT+G P ++ ++I   RG+  +  
Sbjct: 359 SNTLDQGIQLVNQEIDNLLTNGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVIVLR- 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +KYG T+F GY+        +++ K+
Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEK------TEDEGKL 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  +   D                         +K  ++FD+TPFYAE+GGQ+GD G   
Sbjct: 471 LSLREAKD-------------------------RKYLLIFDKTPFYAESGGQVGDQGKIY 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ DVQK+ + IF+H   +E+G+     +  L +D   R   + NH+ATHLLH 
Sbjct: 506 SDNFAGKVLDVQKQKD-IFIHTVKLEKGMPEENKTYKLEVDVVKRLDTAKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G+HV Q GS +  + LRFD +H + +T  +L  IED VN  I + + VV    +
Sbjct: 565 ALREIVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSHHS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I SE  
Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEY----RK 769
           I AG+RRIEA TG  A  +L+ ++E   LK++   LK +  N+V +VE+  E      ++
Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEADILKNIEQKLKATNSNLVEKVEKNLETLKDTEKE 737

Query: 770 LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L+++  K  L      +S   +I  V  +     +  +++L++++D ++   +  II+L 
Sbjct: 738 LEILKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S + K +  + VT+ L D+  A DL +  A++  GG GGGRP  AQ+GG +  K   A
Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRPDFAQAGGKDEGKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVREIIE 863


>gi|256752916|ref|ZP_05493749.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748196|gb|EEU61267.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 757

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 326/767 (42%), Positives = 471/767 (61%), Gaps = 45/767 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     Q+  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I  K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +L   ++ L   GK  +L G  AFKLYDT+G PLD+ ++IL   G+  +D  
Sbjct: 361 ETIDQGLTILQDYINELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE+QR RAR+      S   + I+ +L +    T+F+GYD               
Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYD--------------- 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                   T   +S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    
Sbjct: 462 --------TYESNSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILEN 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + + +++ D +K  +  F+H   +ERG++     +   ID  +RR  + NH+ATHLLH A
Sbjct: 514 ENVLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       
Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTY 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+  GA AL   KY D+VRVV ++      +S  LCGGTHV +T EI +  IVSES++
Sbjct: 633 DEAVKEGAVALFTEKYGDKVRVVKID-----DYSMELCGGTHVKNTNEIGIFKIVSESAV 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E +
Sbjct: 688 GAGLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESL 734


>gi|291522221|emb|CBK80514.1| alanyl-tRNA synthetase [Coprococcus catus GD/7]
          Length = 880

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 358/913 (39%), Positives = 526/913 (57%), Gaps = 58/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ +R  FLEFF+  GH  + S SLIP ND +L+  NSGM P K  FTG E P  + VT
Sbjct: 6   SLNELRKMFLEFFESKGHLAMKSFSLIPHNDNSLLLINSGMAPLKPYFTGAEIPPRRRVT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R G    DL+NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD 
Sbjct: 66  TCQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTQVVGLDP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY ++Y +D+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE 
Sbjct: 122 DRLYPSIYQDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEK 180

Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+ 
Sbjct: 181 YGCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHNHYTDLIQKNIDTGMGLERLAVVVQDV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +D+D  + L      + G+KY  +    V+ R+I DH+RS++F+I+DGI+P+NEGRG
Sbjct: 241 DSIFDVDTIQALRNKVCDLAGVKYLEKHETDVSIRIITDHIRSATFMISDGIMPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E+++F
Sbjct: 301 YVLRRLIRRAARHGRLLGIEGKFLAKLSATVIETSKDGYPELEEKKEFIFNVLTQEEDKF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KT+D+GL +L+ +   L  ++  +L+G  AFKLYDT+G P+D+ ++IL  +G   ID  
Sbjct: 361 NKTIDQGLSILNEMEEKLSAEDKKVLDGADAFKLYDTYGFPMDLTKEILEEKGY-DIDEE 419

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            F   ++EQR +AR     ++ +G  +   ++I  S+      + F+GY+          
Sbjct: 420 GFTVCMQEQRQKARDARKVSNYMGKDATVYDEIDPSV-----TSVFVGYE---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
             K  C+ P           +  +  + E+ +    GQ   +   +TPFYA +GGQ+ DT
Sbjct: 465 --KTECESP-----------ITVLTTETELTDALTDGQTGTIFTQETPFYATSGGQMADT 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G     ++ DV K   G   H  +V  G+ +    + L I+ + R   + NHSATH
Sbjct: 512 GVITGPEGTFEVKDVVKLLGGKIGHIGVVTSGMFKKGDVVKLAINKEKRSDTAKNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LGSHV Q GS    D LRFD TH   +T  EL  +ED VN+ IA+ LPV+T
Sbjct: 572 LLQKALRIVLGSHVEQAGSFNNQDKLRFDFTHFSALTQEELDRVEDIVNEEIAKGLPVLT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++MN EDA  +GA AL G KY+D VRVVS+     G  S  LCGGTH  +T  I    I+
Sbjct: 632 KVMNIEDAKKTGAMALFGEKYSDDVRVVSM-----GDFSKELCGGTHTDNTASIAAFKII 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ + AG+RRIEA+TG     +    ++KL   A   K     +V R+E + EE + L 
Sbjct: 687 SETGVAAGVRRIEALTGNGVFKYYKEVEKKLHEAAKTAKCDPAQLVKRIEGLHEEIKTLT 746

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIM 826
             + + K ++  + +    +++ DVN +S +   + ++D +EL ++ D L+ K+  G+I+
Sbjct: 747 AENNQLKNKMAKDAMGDVMNQVKDVNGVSFLPVHVKDIDMQELMNLGDQLKAKLGDGVIL 806

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L       K S+L + T+  + +  +A +L +  AK++ GGGGGGRP+MAQ+GG N    
Sbjct: 807 LAS-ENGGKVSLLAMATDGAMKKGAHAGNLIKAVAKLV-GGGGGGRPNMAQAGGKNPAGI 864

Query: 886 DQAIAGVASFLKK 898
           +QA+   A  L K
Sbjct: 865 NQALEAGAEELAK 877


>gi|330684847|gb|EGG96537.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 876

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 348/924 (37%), Positives = 518/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT E    ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSEKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EA+K+W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDVEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGAD 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 FGKDDPEEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I   EQV+G  Y  N    V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKTYLQNIDQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVAEIMEPYYPNVKEKSEFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+G +S    G  EI NG  AFKLYDT+G P+++ +++    
Sbjct: 354 IKSEEERFHETLEEGLAILNGFISQAKEGNQEI-NGKDAFKLYDTYGFPIELTEELATQE 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK     + F+GY+  
Sbjct: 413 GLT-VDMTTFEAEMQQQRDRARQARQNSQSMQVQSEV-------LKNITTESHFVGYN-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++Q GE V++A +G+ +  +   TPFYA 
Sbjct: 463 ---------------------TTDYQTELIHLIQNGEEVDKADTGETIYFMLKDTPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ D G    D   + +T+V K   G  +H   ++ G +     +  +++   RR +
Sbjct: 502 SGGQVADKGTVSNDHFEIAVTEVTKAPNGQNLHKGTIQFGQVTKGAEVDASVNKDERRSI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG HV+Q GS + P+ LRFD +H   +T  E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKEVLGDHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + MN ++A A GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WRGIDVRIQEMNIDEAKAMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVENTA 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    E+   +   +KV +   VV ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQ 736

Query: 763 IWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           I +E + L  QL    +++      N+E+    ++  +N +  + +EVD   +K ++S M
Sbjct: 737 IQDEEKSLIKQLEQRDKEITSLKMGNIEE----QVETINGLKVLATEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  +I+L   + + K S++  V +D  D+  A D+ +  A ++ GG GGGRP 
Sbjct: 793 DDFKSKLQDTVIILAS-NVDGKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       +++  +  ++K
Sbjct: 851 MAQGGGTQPENITESLRFIKDYIK 874


>gi|86153544|ref|ZP_01071748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843270|gb|EAQ60481.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 842

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/892 (39%), Positives = 516/892 (57%), Gaps = 72/892 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175

Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               SSE+     G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K
Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N+D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYV
Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  
Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T++ G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F  
Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RA+A   G G  T    + +L EK+G   F+GY+            K  C+  
Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            + L +     V  +   G             V+ + TPFYA +GGQ  D+G       +
Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504

Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ D QK      ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL  
Sbjct: 505 REVLDTQK---FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALRE 561

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A
Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEA 621

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG
Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778
           +RRIEA+  + A   +  Q E+L  +   LK    +++  V+++  E   L+  +    K
Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILNGVKKLKNEILSLKNELKNSSK 733

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +L+ +++   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK    
Sbjct: 734 TELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            I +   + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 782 -ITLAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|57238291|ref|YP_178628.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|148925880|ref|ZP_01809567.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|73621968|sp|Q5HVQ7|SYA_CAMJR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57167095|gb|AAW35874.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|145844866|gb|EDK21970.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|315057927|gb|ADT72256.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 842

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 350/888 (39%), Positives = 512/888 (57%), Gaps = 64/888 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+
Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ 
Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + E
Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++RA+A   G G  T    + +L EK+G   F+GY+            K  C+   + L
Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            +     V  +   G             V+ + TPFYA +GGQ  D+G       + ++ 
Sbjct: 465 LDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508

Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D QK      ++ + ++ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782
           EA+  + A   +  Q E+L  +   LK    +++  ++++  E   L+  +    K +L+
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +++   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK     I +
Sbjct: 738 SKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784

Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 785 AAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|210622569|ref|ZP_03293251.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275]
 gi|210154152|gb|EEA85158.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275]
          Length = 911

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 346/901 (38%), Positives = 537/901 (59%), Gaps = 55/901 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR+ FLEFF+   H +  S  L+P ND +L+  N+GM P KN F+G E P    + T
Sbjct: 39  LNEIRSKFLEFFKTKDHYVGASYPLVPNNDKSLLLINAGMAPLKNYFSGVEVPPKNRMAT 98

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG T RH TFFEMLGNFSFG YFK  ++   W+  TK  ++ + 
Sbjct: 99  CQKCIRTG----DIENVGVTARHATFFEMLGNFSFGDYFKRESLAWGWEFATKWLNIPEE 154

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           ++++TVY++D+EAF +W K  G   ++I+R+  +DNFW +   GPCGPCSEI+FD+GE  
Sbjct: 155 KIWVTVYEKDDEAFDIWSKEMGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDRGEEY 213

Query: 182 -C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            C  P   PG   + +R++E WN VF QF ++       L   +IDTGMGLER+A ++Q 
Sbjct: 214 GCDSPDCKPGC--DCDRFLEFWNHVFTQFSKEEDGSYSELENKNIDTGMGLERIACIMQG 271

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEG 296
             N +++D    +++A  +V G++Y G +  N    R+I DH+R+ SFLIADG+LP+NEG
Sbjct: 272 VDNIFEVDTIHSVLEAVSKVAGVEY-GKDKANDKSIRIITDHIRAVSFLIADGVLPSNEG 330

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGY+LRR++RRA  + +LLG     +  L+  +    G AYPEL++ +  I++ ++ E+E
Sbjct: 331 RGYILRRLLRRAARHGKLLGIKGTFLNGLVDEVIKVSGDAYPELVEKEDYIKKVIKIEEE 390

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +T+D+G+ +L+     L K+   +L+G++AFKLYDT+G PLD+  +IL   GL+ ++
Sbjct: 391 KFNETIDQGMEMLNSYKEELKKEGKTVLSGEIAFKLYDTYGFPLDLTVEILREEGLS-VN 449

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ +E+Q+ RAR  + G   G + K     KE+   ++F+GY  L G      + K
Sbjct: 450 EEEFSEEMEKQKERART-ARGNMDGESWKEDPLAKEENVESEFVGYVELTG------EGK 502

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           VL                 AIV+  EIVE A  G+ V VV D+T FY E GGQ GD G  
Sbjct: 503 VL-----------------AIVEDSEIVESASEGKDVVVVLDKTNFYPEGGGQAGDCGVL 545

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + + + +K   G   H   V  G L+    L   +D +NR   S NH+ATHLLH
Sbjct: 546 KNDNCAVAVKNTKKGPAGSIKHFGTVVAGELKAGDVLTCEVDRENRMACSRNHTATHLLH 605

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H +Q GS +T D LRFD TH + +T  ELK+IE+ VN+ I     VV   M
Sbjct: 606 KALKEVLGDHANQAGSLVTADRLRFDFTHFEAVTKEELKTIEEKVNNAIFNAYDVVAETM 665

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A A GAAAL G KY + VRVVS+     G +S  LCGG H+S+T +  +  I+SE 
Sbjct: 666 DINAAKAKGAAALFGEKYGNEVRVVSM-----GDYSMELCGGAHISNTAQAGMFKIISEG 720

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+TG+    ++  +DE +  + + +K  +  ++ RVE + EE + L  +L
Sbjct: 721 GVAAGVRRIEAVTGKAVYEYMNKKDELIAKVCATIKAKEDGLLHRVENVLEENKNLEKEL 780

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K ++ +   D +     ++  V+ +++    +D   L+   D L+ K++SG+++L  
Sbjct: 781 HNLKTQISMQSADSALDSKVEVKGVSLVTNKYENMDMNTLRDTADNLRDKMESGVVVLAN 840

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           ++ + K + ++  T+D++++  ++ ++ R  AK+  GG GGGRP+MAQ+G     K D+A
Sbjct: 841 VA-DGKVNFVVTATKDVIEKGVHSGNIVREVAKI-AGGKGGGRPNMAQAGATEPAKVDEA 898

Query: 889 I 889
           +
Sbjct: 899 L 899


>gi|329770463|ref|ZP_08261842.1| alanyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328836318|gb|EGF85984.1| alanyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 873

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 342/911 (37%), Positives = 525/911 (57%), Gaps = 77/911 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF + GH++ PS+SL+P +DPTL++ NSG+   K  F G+  P    +T  
Sbjct: 7   TEIRRMFLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGRVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT E    L++
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAVAWAWEFLTSEKWLGLEK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            +L +T++ ED EA+ +W    GL  ++IIRI  N  FW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLSVTIHPEDTEAYDIWHNQIGLPEERIIRIEGN--FWDIGE-GPSGPNTEIFYDRGEE 179

Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WN+VF Q+          LP  +IDTGMGLER
Sbjct: 180 TDTKSPKEEMYPGG------ENERYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGI 290
           +A+VLQ+   N+D DLF  +I   E+++G KY  NN  +   +VI DH+R+  F IADG 
Sbjct: 234 IASVLQDVPTNFDTDLFMPIINEIEKLSGKKYGVNNEKDEAFKVIADHIRTVVFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ YA++L      M  L   +   M   YP + ++   +++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLELNNSFMYKLTDVVAEIMNDYYPNVKESADFVKDV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E++RF +TL+ G  +L+G++S + KD  +I++G  AFKLYDT G P+++ ++     
Sbjct: 354 ILKEEDRFHETLNEGEAILNGIVSEV-KDTTKIISGKDAFKLYDTFGFPIELTEEYAEEY 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +DI  FN+ +E+Q+ RAR+      S   +   +S     G ++FIGY        
Sbjct: 413 GLK-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--RIIGNSEFIGYTQFE---- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQ 527
                              VSS + AIV + + + +  S ++V +VVF++TPFYAE+GGQ
Sbjct: 466 -------------------VSSKLLAIVDKEDNLLDKYSDEEVVKVVFEKTPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSI 585
           + D G  + +G + ++ DV+K  +   +H   V  G  +   E  L+++ D+  R  +  
Sbjct: 507 IADHGEILANGFKAKVLDVKKLPDKRHIHFVKVLEGEFKVGNEYELIVSRDF--RLNVEK 564

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I  
Sbjct: 565 NHTATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWN 624

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            L + T  M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH S++ E+
Sbjct: 625 ALEIKTEEMPIAEARKLGAQALFGEKYGDIVRVVSI-----GDYSIELCGGTHNSNSSEV 679

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +  ++SE+ + AG+RRIEA+TG+ A  +L  Q+E L+++    K +  NVV +V  +  
Sbjct: 680 GIFKVISETGVAAGVRRIEALTGRAAYEYLRQQEETLRTVEKLTKANASNVVEKVTNLQT 739

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQK 818
           E +KL     K  LQ  + +   + + +       +N ++ ++   +   LK ++D  + 
Sbjct: 740 EIKKLS--KEKESLQQKIANAELNNLVNNIKEVNGINVLTSLVESENMNHLKQLVDNAKS 797

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K+++ II    I+ + K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G
Sbjct: 798 KLENYIIAFASIN-DDKVNFVVAVDKAITDKYNAGKLVNILATVC-EGRGGGRPDMAQAG 855

Query: 879 GPNGNKADQAI 889
             N +  D+A 
Sbjct: 856 AKNKDNIDKAF 866


>gi|229105022|ref|ZP_04235676.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678399|gb|EEL32622.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 880

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N+D DLF  +I A+E ++G KY   ++   +  +VI DH+R+ +F + DG LP+
Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYCNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I + +++
Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++     G+ 
Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RARA    + S   +     L E   A++F+GY           
Sbjct: 418 -VDHKGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T    S + A+V+ GE  +   +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 465 -------------TVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG+++ + DVQK   G  +H  +VE G L    ++   ID +NR  +  NH+ATH
Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNHTATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++ V  
Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESINVEI 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +  IV
Sbjct: 632 SQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E ++LQ
Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +     +L      N+ D S   +  VN ++  ++  D   L+++MD L+ K++S ++
Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +LV ++ + K ++L  VT+DL+ + ++A  L +  A    GGGGGGRP MAQ+GG N  +
Sbjct: 806 VLVSVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863

Query: 885 ADQAIAGVASFLK 897
            ++A+A V  ++K
Sbjct: 864 VEEALAFVQEYVK 876


>gi|154686881|ref|YP_001422042.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|205829982|sp|A7Z735|SYA_BACA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154352732|gb|ABS74811.1| AlaS [Bacillus amyloliquefaciens FZB42]
          Length = 878

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 352/910 (38%), Positives = 540/910 (59%), Gaps = 58/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEK 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P  SE     E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V+
Sbjct: 180 Y-GNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANE 295
           Q+ + N+D DLF  +I+A+E+++G  Y  + + +   +VI DH+R+ +F ++DG LP+NE
Sbjct: 239 QDVSTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ LG + P M  L+P +   M + YPE+ + +  I + +++E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKTLGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL+ GL +L  V+    +    I++G   FKLYDT+G P+++ ++      +  +
Sbjct: 359 ERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMT-V 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +E+QR RAR     +GS   +    +L++    + F+GY  +      K + 
Sbjct: 418 DHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAV------KAEA 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+GD G 
Sbjct: 470 KVI-----------------ELLHDGQLISEAHEGDTVQILLDKTPFYAESGGQIGDRGV 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +   + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+ATHLL
Sbjct: 513 LRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHLL 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++PV   +
Sbjct: 573 HQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIPVAIDL 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
               +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IVSE
Sbjct: 633 KPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVSE 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E ++ Q  
Sbjct: 688 SGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELKEAQRE 747

Query: 774 HAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
           +     +L NVE  +   K+ D+  +  +  +V++K+   L++++D L+ K+ S +I+L 
Sbjct: 748 NESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIILG 807

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            +  E K ++   VT+DL+++  +A  + + +A+V  GGGGGGRP MAQ+GG +  K ++
Sbjct: 808 AVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVC-GGGGGGRPDMAQAGGKHPEKLEE 865

Query: 888 AIAGVASFLK 897
           A+A    ++K
Sbjct: 866 ALASAVDWIK 875


>gi|121612666|ref|YP_001000209.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005165|ref|ZP_02270923.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205830017|sp|A1VYL8|SYA_CAMJJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|87250291|gb|EAQ73249.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 842

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/892 (39%), Positives = 515/892 (57%), Gaps = 72/892 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175

Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               SSE+     G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K
Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N+D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYV
Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  
Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T++ G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F  
Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQ++RA+A   G G  T    + +L EK+G   F+GY+            K  C+  
Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            + L +     V  +   G             V+ + TPFYA +GGQ  D+G       +
Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504

Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ D QK      ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL  
Sbjct: 505 REVLDTQK---FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALRE 561

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHVSQ GS +  + LRFD TH K +   EL+SIE  VN++I  +   +   M  E+A
Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNEMIINSSEAILENMPLEEA 621

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG
Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778
           +RRIEA+  + A   +  Q E+L  +   LK    +++  V+++  E   L+  +    K
Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILNGVKKLKNEILSLKNELKNSSK 733

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +L+ +++   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK    
Sbjct: 734 TELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            I +   + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 782 -ITLAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|82751218|ref|YP_416959.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123547858|sp|Q2YT60|SYA_STAAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82656749|emb|CAI81178.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 876

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 348/924 (37%), Positives = 522/924 (56%), Gaps = 87/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF +TL+ GL +L+ ++  +    +EI NG  AFKLYDT+G P+++ ++I    
Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412

Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           GL  +D+ +F   +++QR RAR     + S+ + S         LK    A+ F+GYD  
Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T    + +  ++  GE V +  +G+ V  +  +TPFYA 
Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ DTG    D   + +++V K   G  +H   V+ G +    ++   ++  +RR +
Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGAVQFGQVNVGATVSAEVNQNDRRDI 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I
Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + + V  + M+   A   GA AL G KY D VRVV++        S  LCGG HV +T 
Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI L  IVSES   AG+RRIEA+TG+ A  +L    EK  ++ S +KV S   V+ ++ +
Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVIDKLTQ 736

Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
           + +E + L     +R  ++      N+ED    ++ ++N    +++EVD   +K ++S M
Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  + K+Q  II+L   + + K S++  V + L +   A DL +  A ++  G GGGRP 
Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-SGKGGGRPD 850

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ GG       ++++ +  ++K
Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874


>gi|284925772|gb|ADC28124.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 842

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 350/888 (39%), Positives = 512/888 (57%), Gaps = 64/888 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+
Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ 
Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + E
Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++RA+A   G G  T    + +L EK+G   F+GY+            K  C+   + L
Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            +     V  +   G             V+ + TPFYA +GGQ  D+G       + ++ 
Sbjct: 465 LDEDFKEVSTLKDVG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508

Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D QK      ++ + ++ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782
           EA+  + A   +  Q E+L  +   LK    +++  ++++  E   L+  +    K +L+
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +++   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK     I +
Sbjct: 738 SKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784

Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 785 AAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|254252618|ref|ZP_04945936.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895227|gb|EAY69107.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 914

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 303/672 (45%), Positives = 413/672 (61%), Gaps = 42/672 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   T
Sbjct: 22  KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYSRAT 81

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + L +
Sbjct: 82  TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWELLTTVYLLPK 141

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPCSEI 175
            +L++TVY ED+EA+ +W K  G++ ++IIRI  N              +TGPCGPC+EI
Sbjct: 142 DKLWVTVYQEDDEAYDIWAKEVGVATERIIRIGDNKGARYAVGQLLDDGDTGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS EE G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+A
Sbjct: 202 FYDHGPDVWGGPPGSHEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLA 261

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF++LI+A+ +VT +    NN +  +VI DH+R+ +FLI DG++P N
Sbjct: 262 AVLQHVHSNYEIDLFQNLIKAAARVTEVADLNNNSL--KVIADHIRACAFLIVDGVIPGN 319

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR E
Sbjct: 320 EGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGDAYPELKEAEQRVTDVLRQE 379

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   R +  
Sbjct: 380 EERFFETIEHGMSILEAALAELDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERSVT- 438

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  QR +ARA           K    L+     T F GY+     +   +D
Sbjct: 439 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 486

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                 A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 487 AKVV-----------------ALYVDGSSVNEVKTGQHAVVVLDHTPFYAESGGQVGDQG 529

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATHL
Sbjct: 530 VLANAATRFAVADTLKVQADVIGHHGTLEQGTLKIGDVLRAEIDAQRRARTQRNHSATHL 589

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + R
Sbjct: 590 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVR 649

Query: 653 IMNREDAIASGA 664
           +M  ++A+  GA
Sbjct: 650 VMPYDEAVKGGA 661


>gi|242373918|ref|ZP_04819492.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348472|gb|EES40074.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 876

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 345/920 (37%), Positives = 511/920 (55%), Gaps = 79/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTIHPEDTGAYKIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQNDPEEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E ++G KY       V  +VI DH+R+ +F IADG 
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENISGKKYLEVDEQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+  +    KD   + G+ AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLAILNQFIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +D+ +F   +++QR RAR     + S+ + S         LK     + F+GY+   
Sbjct: 414 LT-VDMATFENEMQQQRDRARQARQNSQSMQIQSEV-------LKNITDDSTFVGYE--- 462

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T    S +  ++  GE VE   +G+ V  +  +TPFYA +
Sbjct: 463 --------------------TTDYQSTITHLIYNGEEVESVEAGETVYFILKETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   + +T+V K   G  +H   V+ G       +  +++   RR + 
Sbjct: 503 GGQVADEGTVGNENFEIAVTEVTKAPNGQNLHKGTVQFGQATVGAEVDASVNKDERRAIQ 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS +  D LRFD +H  P++  E+  +E  VN+ I 
Sbjct: 563 KNHSATHLLHQALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMSQEEIDQVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V  + M  ++A + GA AL G KY D VRVV++        S  LCGG HV++T E
Sbjct: 623 RGIDVRIQEMGIDEAKSMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTSE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I L  IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV S   VVG++ ++
Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNNVKVKSDDQVVGKITQL 737

Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            EE + L     +R  ++      N+ED     I D+  ++  +   ++K ++S MD  +
Sbjct: 738 QEEEKNLLKQLEQRNKEITSLKMGNIED-QVETINDLKVLATEVDVPNAKAIRSTMDDFK 796

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+Q  II+L   +   K S++  V + L D+  A DL +  A V+ GG GGGRP MAQ 
Sbjct: 797 SKLQDAIIVLAS-NVNGKVSIIATVPKSLTDQVKAGDLIKHMAPVV-GGKGGGRPDMAQG 854

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG    K  +A+  +  ++K
Sbjct: 855 GGTQPEKITEALRFIKDYIK 874


>gi|284048255|ref|YP_003398594.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952476|gb|ADB47279.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 875

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 342/901 (37%), Positives = 516/901 (57%), Gaps = 58/901 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF++ GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP    +TT 
Sbjct: 7   NEIRQKYLDFFKERGHLVLPSASLIPHDDPTLLLIGAGMAPFKPYFTGKVKPPATRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR G    D++NVGRT RHHT+FEMLGNFSFG YFK+  I  AW+ LTK  +L   +
Sbjct: 67  QKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKVLELPADK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ITVY +D+EA+ LW  + G+ A++I+++   DN+W +   GPCGP SEI  D GE   
Sbjct: 123 LWITVYPKDQEAYDLWHDVCGVPAERIVKL--EDNWWEITSGGPCGPDSEIHIDLGEERG 180

Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  G   +  R++E+WNLVF Q+ ++       L   +IDTG+GLER+A+VLQ K +
Sbjct: 181 CGSPDCGPGCDCGRFLELWNLVFTQYNKEPDGSYTPLQHKNIDTGLGLERVASVLQNKPS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+ + +V+G  Y  +  + V+ +VI DH RS +F+I DGILP+NEGRGY+
Sbjct: 241 NFETDLIFPIIEYACRVSGKTYNADPKDDVSLKVIADHARSVTFMIGDGILPSNEGRGYI 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ + RLLG  +  ++     +    G  Y +L + K  IE+ +  E+  F +
Sbjct: 301 LRRVLRRAIRHGRLLGIRKEFLVGAADLVIDMYGDHYTDLREKKSYIEKVIAMEENSFLQ 360

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++G  LL+  +  + K    +LNG+ AF+LYDT G P ++ ++IL  +G   +D   F
Sbjct: 361 TLEQGTDLLNQKIDAMRKAGSTVLNGEDAFQLYDTFGFPWELTEEILEEQGFT-MDKEGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A+E QR RAR       S   +K                     G   + E R +   
Sbjct: 420 EKAMEAQRERAR-------SARNDK--------------------EGKPVLYETRHLKLG 452

Query: 479 KPPIDLT--NG-VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
              +D    NG V++I  A     + ++ A SG ++ V+   T F+AE GGQLGDTG  +
Sbjct: 453 TLTVDEASKNGKVAAIFPA--HDTQPIQNAKSGDELAVILTNTAFHAEGGGQLGDTGRLV 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D     +TD +K  +G  +    +E+G L     +   ++ + R  ++ NH+ATHLLH 
Sbjct: 511 SDKGIFNVTDTKKLPDGYTIQLGTLEQGTLSVGDEVEFEVNLKRRADIARNHTATHLLHA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LGSHV+Q GS + PD LRFD +H  P+T  EL  +ED VN+ I   + V      
Sbjct: 571 ALKQVLGSHVNQAGSYVGPDRLRFDFSHFSPLTEEELAQVEDIVNEKILDAVDVEISQQE 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A   GA AL G KY   VRVV+V       +S  LCGG HVS+T  I L  I+SESS
Sbjct: 631 LEKAREMGAMALFGEKYGKIVRVVNVPG-----YSMELCGGVHVSNTSHIGLFKILSESS 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773
           + AG+RRIEA+TG+ A ++    +  +   A+ +K    N+V R+  + E+ R  K +  
Sbjct: 686 VGAGVRRIEAVTGRGALAYTRELENLIGEAATAVKGRPNNLVTRISALQEDLRAEKHRAD 745

Query: 774 HAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ++KL   Q          +  V F++  +   D   L+ + D L+ K   G+++L   
Sbjct: 746 EMEKKLVAAQAASVTADAKDVKGVAFLAQEVKVQDVDALRKMGDTLRDKT-GGVVVLAAP 804

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K ++L++ +++ + +  +A  +A+  A+ + GG GGGRP MAQ+GG + +K  + +
Sbjct: 805 MSADKVNILVMASKEAVKKGIHAGKIAKAVAQTM-GGNGGGRPDMAQAGGKDASKVQEGL 863

Query: 890 A 890
           A
Sbjct: 864 A 864


>gi|205355365|ref|ZP_03222136.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346599|gb|EDZ33231.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 842

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 350/888 (39%), Positives = 511/888 (57%), Gaps = 64/888 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+
Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ 
Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + E
Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++RA+A   G G  T    + +L EK+G   F+GY+            K  C+   + L
Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            +     V  +   G             V+ + TPFYA +GGQ  D+G       + ++ 
Sbjct: 465 LDEDFKEVSTLKDVG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508

Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D QK      ++ + ++ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782
           EA+  + A   +  Q E+L  +   LK    +++  ++++  E   L+  +    K +L+
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            + +   +I         +  +D+ ++K+++D  + K    +I+L+ +  EK     I +
Sbjct: 738 SKSIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784

Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + D    A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 785 AAGVKDVPLKAGTLVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831


>gi|146296899|ref|YP_001180670.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|205830010|sp|A4XKP4|SYA_CALS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145410475|gb|ABP67479.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 881

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 347/909 (38%), Positives = 518/909 (56%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +T
Sbjct: 4   STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L +
Sbjct: 64  TCQKCIRT----PDIDKVGKTARHATFFEMLGNFSFGDYFKKEAITWAWEFVTEILKLPK 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+G  
Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEEGRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGVD 178

Query: 183 IPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G    G   + +RY+E WNLVF QF++        L   +IDTGMGLER+A ++Q  
Sbjct: 179 KGCGKETCGIGCDCDRYVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQGV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID+ K +     ++TG +Y  +    V+ RVI DH+R + F+I DGILP+NEGRG
Sbjct: 239 DSLFDIDIVKAIRDKICEITGCEYGKDSEKDVSIRVITDHIRGTVFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG  E  +  ++  +     S YPELIQ    I++ L +E+ RF
Sbjct: 299 YVLRRLIRRAARHGRMLGKRETFLHLIVDTVIEAYKSPYPELIQKGEYIKKVLYNEESRF 358

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D GL LL+  +  L   K+ +L G++AFKLYDT+G PLD+ ++I   +G+  +D  
Sbjct: 359 NQTIDIGLELLENEIDRLKKNKENVLKGEIAFKLYDTYGFPLDLTREIAAEKGII-VDQA 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ ++EQ+ RAR     L +   + I  +++++   T F+GYD L             
Sbjct: 418 GFDRLMQEQKERARMAQKELENIGWKDINITIEDEV-ETVFVGYDTLE------------ 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S V  I    + V  A  G    ++ D+TPFYAE+GGQ+ D G    
Sbjct: 465 -----------TQSRVLKIFSNDDEVSYAKEGDICYIILDKTPFYAESGGQVADKGVLET 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G   ++ DV+K  +G  +H A V +G +  + ++   ++   R     NH+ATHLLH +
Sbjct: 514 EGGVAEVLDVKKGPKGTILHKAKVIKGEIAVDNNIFAKVNKNLRLATMKNHTATHLLHSS 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG H +Q+GS + P+ LRFD  H +P++  ++  IE  VNDII Q +PV     + 
Sbjct: 574 LRRILGEHATQSGSLVEPERLRFDFAHFEPLSEEQIVEIEKMVNDIIQQAIPVEKIQTDL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + AI  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS+
Sbjct: 634 DSAIKMGATALFDEKYSNIVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEAITG +    ++   + LK + + LK  S   +V ++ ++ E    L+    
Sbjct: 689 AAGVRRIEAITGNKVYEFMLNNQKVLKDIRNKLKANSDSEIVAKINQLEERITALEKELE 748

Query: 776 KRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K KL L   +LS       +I +   + +     D+  ++ + D +++K  S  I+L  I
Sbjct: 749 KHKLLLVDNELSLLYNEGLQIGEFRLIINKKETHDTDYIRLLTDRVREK-DSKAIVLNLI 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++KKA VL+  +++ + +   +D  +    V  + GG GGGRP  AQ GG      D A
Sbjct: 808 KQDKKAIVLMACSKEAVKK--GIDCGKTVKDVCEVLGGKGGGRPDFAQGGGNKIENLDLA 865

Query: 889 IAGVASFLK 897
                  +K
Sbjct: 866 AQRAIELIK 874


>gi|283954216|ref|ZP_06371740.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794234|gb|EFC32979.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 842

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 354/888 (39%), Positives = 514/888 (57%), Gaps = 64/888 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+  +P     T+ Q
Sbjct: 3   IRKAYLDFFALKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+
Sbjct: 180 SSQDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I    ++ G  Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPIIDEIAKLCGKAYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +  E+ERF  T++ 
Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQICLEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + E
Sbjct: 360 GIEIFNEELKN--AKEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++RA+A   G G  T    + +L EK+G   F+GY+            K  C+   + L
Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KTECESKILAL 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            N     V ++   G             V+ + TPFYA +GGQ  D+G       + ++ 
Sbjct: 465 LNEDLKEVFSLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508

Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D QK      ++ + ++ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVGDIIHAKIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YI+ ES + AGIRRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIIKESGVSAGIRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782
           EA+  + A   +  Q E+L  + + LK    +++  V+++  E   L+  +    K +L+
Sbjct: 680 EAVVSKAALEFVKNQLEELFKIKNELK--NNDILSGVKKLKNEILNLKNELKNSSKTELD 737

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +++   +I         +  VD+ ++K+++D  + K    +I+L+ I  EK     I +
Sbjct: 738 SKNIKGVEIC--------VKRVDNGDIKAMIDDFKNKFNKAVILLIQIKDEK-----ITL 784

Query: 843 TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + D    A  L +  A++L GG GGGR   A +GG + +K D+A+
Sbjct: 785 AAGVKDAPLKAGVLVKEVAQIL-GGNGGGRDDFATAGGKDLSKIDEAL 831


>gi|260583982|ref|ZP_05851730.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158608|gb|EEW93676.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 881

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 358/921 (38%), Positives = 516/921 (56%), Gaps = 74/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+   K  F G E P    +T  
Sbjct: 7   SEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEVPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHT FEM+GNFS G YFKE  I  AW+ LT E    LD 
Sbjct: 67  QKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEKWLALDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY+T Y +D E   LW +  GL  D II +   DNFW +   GPCGP +EIF+D+GE 
Sbjct: 123 NRLYVTYYPKDPETKYLWMEKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIFYDRGEK 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF QF          LP  ++DTGMGLER+ +
Sbjct: 180 YQTLAEDDPENYPGG--ENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +IQ  EQ++ G KY  +    V+ +VI DH+R+ SF I DG LP
Sbjct: 238 VIQDTPTNFETDLFMPIIQQLEQLSAGKKYNTSKDLDVSFKVIADHIRAVSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGY++RR++RR++ + + LG     +  L+P + + M S YPE+ +    I++ + 
Sbjct: 298 SNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVASIMHSYYPEVTENMEFIQKVIA 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ RF +T+  GL +L+ V + + +    +L+G+ AFKLYDT+G P ++  +     G 
Sbjct: 358 NEENRFQETIHDGLAILETVFAEMKEQNQTVLSGENAFKLYDTYGFPYELTLEYASDNGY 417

Query: 411 AGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +D   F   ++ Q+ RARA      S+ + S         L++    + F+GYD  R 
Sbjct: 418 E-VDEEGFQAEMKAQKERARAARNTETSMNVQSAV-------LRDITVESTFVGYD--RT 467

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           ++                       ++ AIV + E+VE A+   +V+VVF+QTPFYAE G
Sbjct: 468 TE---------------------KGLLSAIVYEDELVESALEDTRVQVVFNQTPFYAEMG 506

Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G    +  ++  T VQ KKA      H I     ++   + VL +D Q R +L 
Sbjct: 507 GQLSDHGVIKDESGQVVATVVQVKKAPNGQPLHTIDVIAPMQLNSTYVLEVDQQERAKLI 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG+H +Q GS + P  LRFD +H   +T+ EL  +E  VN+ I 
Sbjct: 567 KNHTATHLLHQALKEVLGTHANQAGSLVAPGYLRFDFSHFGQVTAEELAEMERIVNEKIW 626

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L VVT     E+A   GA AL G KY ++VR+V++        S  LCGG HVS+T E
Sbjct: 627 AALDVVTVETTLEEAKKLGAMALFGEKYGNKVRMVNI-----ANWSIELCGGVHVSNTQE 681

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  I+SES I AG+RRIEA+T Q A   L   +  LK +AS +K  Q  +   RV  +
Sbjct: 682 IGLFKILSESGIGAGVRRIEAVTSQEAFELLAKHELLLKQIASDVKSVQLDSTPERVSHL 741

Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E ++ Q   +  K +L    V DL  S     + +F++  +   D  EL+ + D  ++
Sbjct: 742 QQELKEAQHEISALKAKLMKSEVADLFESVSTAGNYSFITVHLPNKDMNELRQLADTWRQ 801

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S  + +V  ++ +KA++L  V++D  ++   A D+ +  A  +  GGGGGRP MAQ+
Sbjct: 802 KAASD-VFVVATNEGEKANLLAAVSKDANEKGIKAGDIIKSIASHI-QGGGGGRPDMAQA 859

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N      A+  V  FL +
Sbjct: 860 GGKNPAGIPAALKAVEEFLTQ 880


>gi|227498470|ref|ZP_03928616.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226903928|gb|EEH89846.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 874

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 338/900 (37%), Positives = 515/900 (57%), Gaps = 57/900 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF+ +GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP    +TT 
Sbjct: 7   NEIRQKYLDFFKAHGHLVLPSASLIPHDDPTLLLIGAGMAPFKPFFTGKMKPPSPRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     +D++NVGRT RHHT+FEMLGNFSFG YFK+  I  AW+ LTKE +L   +
Sbjct: 67  QKCVRT----DDIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKELELPADK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT+Y +D+EA+ +W  + G+  ++I+R+   DNFW +  +GPCGP SEI  D G    
Sbjct: 123 LWITIYPKDDEAYHIWHDVVGVPDERIVRL--EDNFWQIG-SGPCGPDSEIHIDLGADKG 179

Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  G   +  R++E+WNLVF QF Q        L   +IDTG GLER+A+V+Q K +
Sbjct: 180 CGEPTCGPGCDCGRFLELWNLVFTQFNQNADGTYTPLKHKNIDTGAGLERLASVIQGKPS 239

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+ + +++  KY  +    ++ +V+ DH RS +F+I DGILP+NEGRGYV
Sbjct: 240 NFETDLIFPIIELACELSHKKYNADAKTDISLKVVADHARSLTFMIGDGILPSNEGRGYV 299

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ + RLLG     +  L   + +  G  Y EL++ K  I++ +  E+  F +
Sbjct: 300 LRRVLRRAIRHGRLLGIRGKFLAALADKVISMYGEHYTELVEKKEFIDKVIDMEETSFLQ 359

Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL +G  LL+  ++ + K+   +L+GD AFKLYDT G P ++  +IL  +G+  +D   F
Sbjct: 360 TLSQGTDLLNEKIAAMKKENKTVLSGDDAFKLYDTFGFPWEVTDEILQEQGMT-MDKEGF 418

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++A+  Q+ RAR           +K                     G   M + R +  +
Sbjct: 419 DKAMASQKERAR-------KARNDK--------------------EGRPVMYDTRSLHLE 451

Query: 479 KPPIDLTNGVSSIVKAIVQQGEI--VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
              +D  +    +V A+ Q+GE   ++E  +G  + ++   T F+AE GGQLGDTG  I 
Sbjct: 452 GLTVDEASK-EGVVAALYQEGETTPIKEGHTGDSLAIILTNTAFHAEGGGQLGDTGRLIS 510

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D     + + +K  +G  +H   VE G      ++   ++   +  ++ NH+ATHLLH A
Sbjct: 511 DAGIFDVENTKKLPDGTTIHLGTVESGAFSVGQAVTFEVNLDRKADIARNHTATHLLHAA 570

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS + PD LRFD +H  P+T+ E+  +ED VN+ I   + V     + 
Sbjct: 571 LKKVLGGHVNQAGSYVGPDRLRFDFSHFSPLTAEEVSRVEDLVNEAILDAVDVQISEEDI 630

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A   GA AL G KY   VRVV+V       HS  LCGG HVS+T  I L  I+ ESS+
Sbjct: 631 DKAKEMGAMALFGEKYGKIVRVVNVPG-----HSMELCGGVHVSNTSRIGLFKILGESSV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIH 774
            AG+RRIEA+TG  A  +    +  L+  +  +K     ++ R+E + +E +  K     
Sbjct: 686 GAGLRRIEAVTGHGALLYTRELEALLEDASQKVKGRPNTLLSRIEALQDELKAEKHHAAE 745

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
            ++KL       +  K+ DV  +  +I EV   D   L+S+ D L+ K   GI++L    
Sbjct: 746 LEQKLVAAAAQSAGDKVKDVKGIPVLIDEVKVDDVSALRSMGDQLRDKT-GGIVVLFAAM 804

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             +K ++L + +++ + +  +A  + + +A+VL GG GGGRP MAQ+GG N  K  +A+A
Sbjct: 805 APQKVNILTMASKEAVAKGAHAGKIVKAAAQVL-GGNGGGRPDMAQAGGKNSGKIAEAMA 863


>gi|313680711|ref|YP_004058450.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
 gi|313153426|gb|ADR37277.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
          Length = 895

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 347/934 (37%), Positives = 524/934 (56%), Gaps = 84/934 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60
             + IR  +L FF++ GH  LP  SLIP +DPTL+F  +GM P K  F G  KPV+    
Sbjct: 2   TTAEIREKYLRFFEEKGHLRLPPFSLIPEDDPTLLFIVAGMAPLKPYFMGA-KPVFPGHE 60

Query: 61  -----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                V T QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ +T
Sbjct: 61  GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAIAWAWEFVT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168
             K   LD  RLY+TVY +D+EA+ +W+ + G+  ++I R   ++NFW     S    GP
Sbjct: 117 DPKWLGLDPDRLYVTVYKDDDEAYAIWRDVVGVPEERISRWDEDENFWPAGAISEGPNGP 176

Query: 169 CGPCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFI--LPKM 222
           CGPCSEIF+D+G     P     ++  G+R++EIWNLVF QF +      E  +  LP+ 
Sbjct: 177 CGPCSEIFYDRGPGFGSPDETGPNTGSGDRFVEIWNLVFTQFNRSGPIPGEGVLEPLPQK 236

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282
           +IDTGMGL R+A +LQ+  + Y  D FK LI    + +G+ Y+G   V+HRVI DH+R+ 
Sbjct: 237 NIDTGMGLYRVAAILQDVEDFYATDTFKPLIDLVAERSGVPYKGALSVSHRVIADHVRAV 296

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
              ++DG   +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +
Sbjct: 297 VAALSDGATFSNTGRGYVIRRLLRRAVRHGYLLGIKEPFLHELAPVVAELLGDYYPEMKE 356

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
               ++  +R+E+ RF +TL++G+  L+ +L+ L + ++L G+ AF+L+DT+G PLD+ +
Sbjct: 357 QLASVQPAIRAEEARFLETLEQGIRRLESLLAGLKEGDVLPGEEAFRLHDTYGFPLDLTE 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHS------LGLGSGTTEKIWFSLKEKYGATQ 456
           +I   RG+  +D   F +A+ EQ  RARA S          +   E+++    E +GAT+
Sbjct: 417 EIAAERGVK-VDREGFERAMREQVERARAASAFSGDVFAAAAPALERVF----EDHGATE 471

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVF 515
           F GY+ L      +++ KVL                  ++ QGE  ++   +GQ  +VV 
Sbjct: 472 FTGYERL------EDEGKVL------------------LILQGEAELDRLEAGQGGQVVL 507

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+TPFYAE GGQ+GD+G     G R ++   +K  +G+ +H   VE G L    ++   +
Sbjct: 508 DRTPFYAEGGGQVGDSGYLEWPGGRARVVTTKKSKQGLHLHEVEVEEGALAVGAAVRAVV 567

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + RR    NH+ATHLLH AL  +LG  V Q GS + PD LRFD TH+  ++  E++ +
Sbjct: 568 DPE-RRCTEKNHTATHLLHAALRAVLGPQVRQAGSLVAPDRLRFDFTHAAALSPEEVRKV 626

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGV 688
           E  VN  +  + PV    M  E+A  +GA AL G KY D VRVV VE         +  V
Sbjct: 627 ELLVNRWVQADFPVSWTFMPLEEAKKAGAMALFGEKYADTVRVVKVEGSPDTAGILEAEV 686

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGG HV  TGEI    I +E ++ AG+RRIEA+TG+ A  +     ++  +LA  
Sbjct: 687 RSMELCGGCHVRRTGEIGYFVITAEEAVSAGVRRIEALTGEAAVRYARDLLDRDAALARA 746

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIIS 802
           L  S   +  R+E++ +E ++L+  + K    L    L      +  +     +++   +
Sbjct: 747 LGTSLEGLPQRIEKLQQELKQLRRENEKLAADLARAQLGGGGAPAVREAGGWRYVAAAFA 806

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            +D   L+ V D + ++    +++ VG       ++++ V+ D + R  A      +   
Sbjct: 807 GLDVPSLRQVADEILERYGVDLVV-VGAG----GALIVKVSPDAVQRGLAAGQVIRALAE 861

Query: 863 LGGGGGGGRPHMAQSGGPNGNKA----DQAIAGV 892
             GG GGG+PH+AQ GG +  KA    D+ +AG+
Sbjct: 862 RTGGRGGGKPHLAQGGGFDVEKALAALDEVLAGL 895


>gi|210615765|ref|ZP_03290746.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787]
 gi|210150101|gb|EEA81110.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787]
          Length = 885

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 359/911 (39%), Positives = 525/911 (57%), Gaps = 60/911 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL FF+   H ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 12  VNELRKMFLNFFESKEHLVMKSFSLVPNNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 71

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 72  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLDPD 127

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G++ ++I +    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 128 RLYPSVYVDDQEAFDIWNKEMGIAPERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 186

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 187 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYEELEQKNIDTGMGLERLASVVQDVD 246

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     +   ++Y  + +  V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 247 SIFDVDTIKALRDKVCEFASVEYKADADKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+++F 
Sbjct: 307 VLRRLIRRAARHGRLLGIDGKFLAKLSATVIEGSKDGYPELEEKKEFIFKVLTQEEDKFN 366

Query: 360 KTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           KT+D+GL +L  +   +   GK  +L+G  AFKLYDT+G PLD+ ++IL   G   ID  
Sbjct: 367 KTIDQGLSILASMQDEMKEAGKT-VLSGADAFKLYDTYGFPLDLTKEILEEAGYT-IDEE 424

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            F  ++EEQR +AR      + +G  +   ++I  S+      ++F+GYD L  +     
Sbjct: 425 GFKASMEEQRVKARNAREVTNYMGADATVYDEIEASV-----TSEFVGYDRLTHT----- 474

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  +  + EIVE    GQ   +  D+TPFYA  GGQ GDT
Sbjct: 475 ------------------SKISVLTTESEIVEAITEGQNGTIFVDETPFYATMGGQEGDT 516

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +++  K   G   H   V +G+ +   S+ L +  + R     NHSATH
Sbjct: 517 GIICTEDAEFTVSNTIKLLGGKIGHVGNVTKGMFKVGDSVTLEVAEKERANTCKNHSATH 576

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL T+LGSHV Q GS +TPD LRFD  H   +T  EL+ +E+ VN  IA+N+PVVT
Sbjct: 577 LLQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTPEELEKVENIVNTEIAKNVPVVT 636

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +MN E A A+GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    IV
Sbjct: 637 EVMNIEQAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVSNTGNITTFKIV 691

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ + AG+RRIEA+TG     +    +++L   A   K +  N+  ++E +  E + LQ
Sbjct: 692 SEAGVAAGVRRIEALTGDGVFCYYKEVEKELAEAAKAAKSTPANLKEKIEHMQAEMKALQ 751

Query: 772 --LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K K   +      +++ +VN    ++  + +VD   L+ + D L++K+  G+++
Sbjct: 752 SEIESLKSKAAKDALGDVMNQVKEVNGVRLLATAVEDVDMNGLRDLGDQLKEKLGEGVVV 811

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   S   K +++ + T++ +++  +A +L +  A ++ GGGGGGRP+MAQ+GG N    
Sbjct: 812 IAS-SASGKVNLIAMATDEAMEKGAHAGNLIKGIAALV-GGGGGGRPNMAQAGGKNPAGI 869

Query: 886 DQAIAGVASFL 896
             AIA  A  L
Sbjct: 870 PDAIAKAAEVL 880


>gi|78044932|ref|YP_359396.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576855|sp|Q3AEN8|SYA_CARHZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77997047|gb|ABB15946.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 874

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 359/906 (39%), Positives = 542/906 (59%), Gaps = 54/906 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH++LPS+SLIP NDP+L++T +GMVPFK  FTG   P  + VTT QK
Sbjct: 6   IREKFLKFFESKGHKILPSASLIPANDPSLLWTAAGMVPFKPYFTGAAVPEVRRVTTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      D+++VGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   + + +LY
Sbjct: 66  CLRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFVTEHLGISKDKLY 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           IT+Y +D+EAF +W  + G+ A++I R+  + NFW +   GPCGPCSEI+ D G     G
Sbjct: 122 ITIYLDDDEAFDIWHNVVGVPAERITRLGKDTNFWEIG-VGPCGPCSEIYVDLGPEKGCG 180

Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  G + +  R++EIWNLVF+QF +  +     L +  IDTGMGLER+A+VLQ   +N+
Sbjct: 181 SPDCGVACDCGRFLEIWNLVFIQFFRDEQGNYTPLEQKGIDTGMGLERVASVLQGVPSNF 240

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D D+F+ ++  + Q+ G+KY  +  V+   +VI DH R+ +F I DG LP+NEGRGYV+R
Sbjct: 241 DTDIFREIMDYAAQILGVKYGYDEKVDVALKVIADHTRAITFAITDGALPSNEGRGYVIR 300

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R++RRA+ + RLL   EP + HL+ A   E MG  YPEL +      + ++ E+E+F +T
Sbjct: 301 RLLRRALRFGRLLDREEPFL-HLVAAKVIEQMGDVYPELREKAEHTLKIIKLEEEKFRET 359

Query: 362 LDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           L++GL +L  ++  L   GK EI  G +AFKLYDT+G P+++ ++I   +G   +D   F
Sbjct: 360 LNQGLSMLAELMERLTQEGKKEI-PGHLAFKLYDTYGFPIELTKEIAEEKGFT-VDEEGF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            Q +EEQR RAR     +   +T   +   LKE+ G   F+GY+ L  S           
Sbjct: 418 KQQMEEQRRRAREAREDVDYLSTRDAFLKQLKEELGEVTFVGYEKLSES----------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + + AI++ G+ VE   + ++ E++   TPFY E GGQ+ D G  +GD
Sbjct: 467 ------------TEIIAIIKNGQKVESLAAEEEGEIITRVTPFYPEGGGQVADKGEILGD 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G +L + DV+K      +H   V  G ++      L +D   R   + NH+ATHLLH AL
Sbjct: 515 GFKLSVLDVEKPLSDFILHKVKVVEGSVKVGDKATLMVDETTRMSTARNHTATHLLHKAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS +TP+ LRFD TH + ++  +L+ IE+ VN+ I +NL V       +
Sbjct: 575 KMVLGEHVNQAGSLVTPERLRFDFTHFEGVSDEDLRKIENIVNEAILRNLLVQIDYTTLD 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +G  AL   KY D VRVV +     G  S+ LCGGTHVSSTG I    I+ ESSI 
Sbjct: 635 EARKAGVIALFDEKYGDLVRVVKI-----GEFSAELCGGTHVSSTGVIGFFKILGESSIG 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLI 773
           AG+RRIEA+TG  A  ++   ++ L+      K +   +  ++    + + E+ R+++ +
Sbjct: 690 AGVRRIEALTGLGALEYVRSLEDTLQKATEPYKCTFAELPEKISNTLKTLKEKDREIEAL 749

Query: 774 HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             K    + V+ L  S  +I  V  +S II   D + L+   D ++  + + +++L G+ 
Sbjct: 750 MQKIA-SIEVKSLLNSVREIKGVKVLSAIIDGADMEGLRKAYDVVKASLANYVVLLAGV- 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           K+ K + L  V ++L D+++A +L + +AK+  GGGGGGRP MAQ+GG N  K  +A+  
Sbjct: 808 KDGKVNFLAGVDKNLTDKYHAGELVKEAAKI-AGGGGGGRPDMAQAGGKNPEKVKEALQV 866

Query: 892 VASFLK 897
           + ++++
Sbjct: 867 IDAYVQ 872


>gi|328955592|ref|YP_004372925.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328455916|gb|AEB07110.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 885

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 337/906 (37%), Positives = 513/906 (56%), Gaps = 57/906 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR +FL+FF++ G +++PSSSL+P  DP+L+  N+GM  FK  + G++        
Sbjct: 9   STSEIRASFLDFFERRGCKVVPSSSLLP-EDPSLLLANAGMNQFKQYYLGKKTMREIGAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R      D+D +G   RH +FFEMLGNFSFGG  KE+A   A++  T+   L  
Sbjct: 68  SCQKCIRT----TDIDIIGSDGRHLSFFEMLGNFSFGGVTKEQACAWAYEFSTEVLKLAP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ T++DEDEEA ++W+ + G+S D I R+   DNFW+   TGPCGPCSEI++DQGE 
Sbjct: 124 HRLHFTIFDEDEEAHEIWRAL-GVSEDHISRLGAEDNFWAAGPTGPCGPCSEIYYDQGEA 182

Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  +   E +RY+E WNLVF ++++Q       LP  ++DTGMG+ER+A ++Q  
Sbjct: 183 FGCGSPTCAPGCECDRYLEFWNLVFTRYDRQADGSMPELPHRNLDTGMGIERVAAIVQHA 242

Query: 241 TNNYDIDLFKHLIQASEQVTG-----MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           ++NY+ D+   LI    +++G     + Y+G++  + R+I DH R+++F++ADGI P+NE
Sbjct: 243 SSNYEGDVLSGLIALGVEISGRAYDPLSYQGDS-RSLRIIADHSRAATFMLADGIRPSNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG     +     ++   MG  Y ELI+ + L+   L SE+
Sbjct: 302 GRGYVLRRLIRRAVMHGRLLGIEGAFLSRFARSVIETMGPHYSELIEHRDLVVSFLASEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  T+D G   L+  L+ L + + L+G VAF L+DT G P+D+  +I   RG++ ID 
Sbjct: 362 ERFFATIDNGSAFLEDALAGLARGDTLDGRVAFTLHDTFGFPIDLTIEIARDRGIS-IDE 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A+ EQR RARA    +   + + +W  L +    T F+GYD      +  E R V
Sbjct: 421 EGFDNAMTEQRERARAQVRDVAWSSFDSVWIGLADTISPTAFVGYD-----NYEAEARIV 475

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                             AI+ +   V+   + Q  E+V D+TPF+ E GGQ+GDTG  +
Sbjct: 476 ------------------AIILEDRSVDAVEADQVAEIVLDRTPFFGERGGQIGDTGTLL 517

Query: 536 -GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--SLVLTIDYQNRRQLSINHSATHL 592
             DG    + +  +  E I   H +   G  R  +  +++  ID   R ++  NH+ATHL
Sbjct: 518 RPDGGTAFVVERTEWRERILCSH-VGRVGAERLSVGDTVIAQIDVARRERIRRNHTATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD TH    T+ +L ++ED VND I ++LPV T 
Sbjct: 577 LHAALRGVLGEHVAQEGSFVDDERLRFDFTHFSACTADQLAAVEDRVNDWIFEDLPVATD 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A +SGA AL   KY+ RVRVVS      G  S  LCGGTH  +T ++ +  I+S
Sbjct: 637 VMDLEEAKSSGALALFSEKYSSRVRVVSC-----GTASRELCGGTHAHTTSQLGIFKILS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ESS+    RRIEA++   ARS    +   L   A  L+V   +V  RV  +    R+   
Sbjct: 692 ESSVGTNTRRIEAVSSAGARSFFRRRLALLDETAEKLRVRPEDVPARVSALERSLRETSD 751

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
           +L  A      +  D +  +  D    + +++ +   D ++L+   D ++K+    +  +
Sbjct: 752 KLRRALVGDTSDAIDRAIGEAVDAGGYALVVARIDGLDPQDLRGAWDTIRKRSDGPVAAV 811

Query: 828 VGISKEKKASVLIVV-TEDLLDR-FNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +  +  K+  VLI    ED +   F+   L  R++ K+   GGGGGRP MAQ+GG     
Sbjct: 812 LAGATSKRTPVLIAAGDEDAVHAGFDGAALIKRIAPKI--AGGGGGRPAMAQAGGKETGG 869

Query: 885 ADQAIA 890
            D A++
Sbjct: 870 IDAALS 875


>gi|28210757|ref|NP_781701.1| alanyl-tRNA synthetase [Clostridium tetani E88]
 gi|41018208|sp|Q896F2|SYA_CLOTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28203195|gb|AAO35638.1| alanyl-tRNA synthetase [Clostridium tetani E88]
          Length = 879

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 344/915 (37%), Positives = 533/915 (58%), Gaps = 68/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  + S SL+P ND +L+  N+GM P K  FTG + P    VTT
Sbjct: 6   LNEIREAYLNFFEGKGHLRMESFSLVPKNDKSLLLINAGMAPLKPYFTGVQTPPKSRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +TK  ++ + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKCEVIPWAWEFVTKSLNIPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182
           +LY+T+Y +D+EA+ +W K + +   +I R+   DNFW + + GPCGPCSEI +  +GE 
Sbjct: 122 KLYVTIYLDDDEAYDIWTKSTDIDPSRIFRLGKEDNFWEIGQ-GPCGPCSEIHYQREGEK 180

Query: 183 IPGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           I      S EE       +  IE WNLVF QF++   +    L   +IDTGMGLERMAT+
Sbjct: 181 I-----NSVEEFIKKSDDDEVIEFWNLVFTQFDKDENENYNRLAHPNIDTGMGLERMATI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   + +++D  K ++    ++  +KY  N    ++ RVI DH+RS +F+I+DGILP+N
Sbjct: 236 MQGVNSIFEVDTIKAVLDEISEIANIKYGENKEKDISLRVITDHVRSVTFMISDGILPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + +LLG     +  +   +      AY EL + +  I++ ++ E
Sbjct: 296 EGRGYVLRRLLRRASRHGKLLGIKGNFLYKVCKVVIENSHKAYKELKEKEEYIKKIIKLE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T+D G+ +L+  +  L    +++L GD AFKLYDT+G P+++ ++IL  + +  
Sbjct: 356 EERFAETIDGGIQILNEYVDELINKGEKVLPGDKAFKLYDTYGFPIELTKEILEEKSI-D 414

Query: 413 IDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           ID   F + +E Q+ RARA     + +G       K+   L+     T+F+GY  L    
Sbjct: 415 IDEGGFTKEMEAQKQRARAAREETNYMGSEDTIINKLPIELQ-----TEFLGYSEL---- 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                               V + + AI++  E+VEE   G K  ++ D+TPFY+E GGQ
Sbjct: 466 -------------------SVEAKIIAIIKGEELVEELKQGDKGIIIVDKTPFYSEKGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG   G  ++++I D +    G  +H   +  G ++ + ++ LT+D   R  +  NH
Sbjct: 507 IGDTGILAGKNVKVKIQDCRNNISGKILHFVEILEGSIKLQDTVNLTVDRLRRDAIRKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  I+G+H+ Q GS +    LRFD  H   +T  ELK++E  VN  I + +
Sbjct: 567 SATHLLHEALKKIVGAHIEQAGSFVDEHRLRFDFNHFSSLTKEELKNVEKLVNKKIMEVI 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T++MN E+A  SGA AL   KY+++VRVVS+     G  S  LCGGTHVS++GEI L
Sbjct: 627 PVNTKVMNIEEAKESGAVALFDEKYDEKVRVVSL-----GDFSKELCGGTHVSNSGEIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEI 763
             I+SE+ + AG+RRIE +TG  A  ++  ++  L+ L   LK S  +++ +    +EEI
Sbjct: 682 FKIISETGVAAGVRRIEGVTGFNALKYIEEKEALLEGLCEVLKCSNKDIINKATSQIEEI 741

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             + +++  + +K     + ED+  +  ++  +  +S ++ ++D   L+ + D L+ KIQ
Sbjct: 742 KNKEKEINNLKSKL-ASGSQEDILKNIKEVKGIKLVSGVLKDIDGGALRDLADKLRDKIQ 800

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            G+++L  + + K   V +   E +    +   + +  A +  GGGGGGRP MAQ+GG N
Sbjct: 801 EGLVVLASVGEGKIQFVAMATKEAVAKGAHCGKIIKEVASI-AGGGGGGRPDMAQAGGKN 859

Query: 882 GNKADQAIAGVASFL 896
             KA++AIA V   L
Sbjct: 860 PEKAEEAIAKVEDIL 874


>gi|257468000|ref|ZP_05632096.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062286|ref|ZP_07926771.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313687962|gb|EFS24797.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 866

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 348/907 (38%), Positives = 527/907 (58%), Gaps = 62/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK  F GQ++  Y  VTT 
Sbjct: 5   NQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +D+ +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWSWEFVTEVLKIDKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V+  D+EA ++W +      ++++R+  ++N+W+   TG CGPCSEI  D G    
Sbjct: 120 LWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLGPAY- 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   R+IEIWNLVF ++ +        LPK +IDTG GLER+A ++Q K
Sbjct: 179 GGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
           +NN++ DL   L++ + ++T  +Y  +   N   +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 SNNFETDLLFPLVEEAVKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG +E  +  ++  + + M +AYP+L      I++ ++ E+E+F
Sbjct: 299 YVLRRILRRAVRHGRLLGQSELFLYKMVDKVVSMMENAYPDLRSNIDHIKKVVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD+G+ L++  +  L    I  L+G+V FKLYDT+G P ++ ++I C      I   
Sbjct: 359 SRTLDQGMQLVNQEIEKLKAAGITKLDGEVTFKLYDTYGFPYELTEEI-CQEKEIEISKE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   + EQ+ +ARA    +     +       +KYGAT+F GY  L      K+  K+L
Sbjct: 418 EFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDKYGATEFTGYTTL------KDTGKLL 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
             +   D                        G+K+ ++FD TPFY E+GGQ  D G   G
Sbjct: 472 SARDGKD------------------------GKKL-MIFDTTPFYGESGGQAADIGIITG 506

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G   ++ DVQK+ +GIF H   V +G         L +D  NR   + NH+ATHLLH A
Sbjct: 507 NGFEGKVIDVQKQ-KGIFTHTVEVLKGTPIEGEEYFLEVDEANRMATAKNHTATHLLHEA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV Q GS +  + LRFD  H + +T  EL+ +E+ VN+ IA+ + V    M+ 
Sbjct: 566 LREVLGSHVQQAGSFVNGERLRFDFNHYEAMTGEELEKVEELVNEKIAEAINVSVADMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A  +GA AL G KY D VRVVSVE       S  LCGGTH+ + G+I L  I SE+ I
Sbjct: 626 DEAKKAGATALFGDKYGDVVRVVSVEG-----FSIELCGGTHIDNIGKIGLFKIESEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQL 772
            AGIRRIEA+TG+ A   +   +  LK++   +K  + N++ RVE+    I E  ++L+ 
Sbjct: 681 AAGIRRIEAVTGKGAYKAVKNIEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKELEE 740

Query: 773 IHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + R  Q+  + L+ +   I  V  +        + +L+ ++D ++ K+ + +++L   
Sbjct: 741 LKS-RFTQIEAQALAENSEVINGVTVIMKTFKTTTADDLRKMVDYVKDKMANTVVVLA-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   KA     VT++L  +  A +L +  A V+ GG GGGRP  AQ+GG +  K  +A+ 
Sbjct: 798 SGADKAIFAAGVTKELTSKVKAGNLVK-EAAVITGGNGGGRPDFAQAGGKDATKIQEAMN 856

Query: 891 GVASFLK 897
            V   LK
Sbjct: 857 AVKETLK 863


>gi|153951507|ref|YP_001398463.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|205830016|sp|A7H4N3|SYA_CAMJD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152938953|gb|ABS43694.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 842

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 354/889 (39%), Positives = 511/889 (57%), Gaps = 66/889 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF    HE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IRKAYLDFFASKRHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + RL
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           YITV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 YITVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+
Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSANGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ 
Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDSIKEQIRFEEERFLSTIEN 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + E
Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++RA+A   G G  T    + +L EK+G   F+GY+            K  C+   + L
Sbjct: 417 QKARAKASWKGSGDKTVSGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            +     V  +   G             V+ + TPFYA +GGQ  D+G       + ++ 
Sbjct: 465 LDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508

Query: 545 DVQKKAEGIF-VHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           D QK     F ++ + ++ G  L+        ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 509 DTQK----FFNLNLSFIKAGEELKVGTIAHARIDAEKREQIARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  S
Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RR
Sbjct: 625 GAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQL 781
           IEA+  + A   +  Q E L      LK    +++  V+++  E   L+  +    K +L
Sbjct: 679 IEAVVSKAALEFVKNQLEGLSKAKDELK--NNDILSGVKKLKNEILSLKNELKNSSKTEL 736

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           + +++   +I         +  VD+ ++K+++D  + K    +I+L+ +  EK     I 
Sbjct: 737 DSKNIQGVEIC--------VKRVDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----IT 783

Query: 842 VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +   + D    A  L + +A++L GG GGGR   A +GG + +K D+A+
Sbjct: 784 LAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKIDEAL 831


>gi|269123200|ref|YP_003305777.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314526|gb|ACZ00900.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 865

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 334/917 (36%), Positives = 533/917 (58%), Gaps = 81/917 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R +F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK+ F G++K  Y  +TT 
Sbjct: 4   NELRKSFIEFFKSKEHKHFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKKAPYNRITTY 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVG T RHHTFFEMLGNFSFG YFK  +I+ +W+ +T+   LD  R
Sbjct: 63  QKCIRT----NDLENVGVTPRHHTFFEMLGNFSFGDYFKRESIKWSWEYITEILKLDPNR 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD---QGE 181
           LY++VY  D+EA+ +W K  G+  D ++R+  +DN+W+  E G CGPCSEI++D    GE
Sbjct: 119 LYVSVYLTDDEAYDIWTKEVGVPEDHMVRLGDDDNWWAAGEIGSCGPCSEIYYDTQIMGE 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                     +EG R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q K+
Sbjct: 179 NNEEINSKPGDEGNRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQNKS 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN++ DLF  +I+  ++V  +K E  +  + ++I DHL++S+FLI DG+LP+NEGRGY+L
Sbjct: 239 NNFETDLFIPIIENIKEVLSIKEEEIS-TSVKIIADHLKASTFLICDGVLPSNEGRGYIL 297

Query: 302 RRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           ++++RRA          +   +   + +++ ++   M  AY EL + +  I+  ++SE++
Sbjct: 298 KKLIRRAYGAGAIENREIFNKSLTFLHNIVDSIIDNMKEAYIELDEKREYIKNIIKSEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TL  G  +L   +     + I  L  DV+FKLYDT+G P +  + I+    +    
Sbjct: 358 KFSRTLKSGTEILFEEIKKCKSENISKLPSDVSFKLYDTYGFPFEFTRLIVENNKM---- 413

Query: 415 IIS---FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           I+S   FNQ LEEQ  R++   +       ++      ++ G T F GYD L       +
Sbjct: 414 IVSEDEFNQKLEEQVKRSQDSRVKNSDMIKDEFIDKFYKENGKTLFTGYDTLN------D 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           + KVL  K                          +  +  EV+F++TPFYAE GGQ+ D 
Sbjct: 468 EAKVLHIK-------------------------NLENELYEVIFNRTPFYAEGGGQIADK 502

Query: 532 GCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G    D  +  ++ DV KK++ +F+H+   E   L+ ++  +L +D + R  +  NH+AT
Sbjct: 503 GVIKYDNKVIAEVKDVIKKSD-VFIHYISGEE--LKFDIEYILEVDKKRRNDIKKNHTAT 559

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH  L  +LGS V Q GS ++ DGLRFD ++ + ++  ++  IE+ VN++I +NLPV 
Sbjct: 560 HLLHKVLKDVLGSAVEQAGSLVSDDGLRFDFSYYEQVSQEQVNIIENKVNELILENLPVY 619

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               N  DA+  GA AL   KY D VRV+ +     GV S  LCGGTHVSSTGEI L  I
Sbjct: 620 INYENINDAVKKGAMALFSDKYGDVVRVIDI----SGV-SLELCGGTHVSSTGEIGLFKI 674

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--- 767
            SE    +GIRRIEA TG ++  ++   ++ ++ +++  K S  N++  + +  EE    
Sbjct: 675 KSEQGKASGIRRIEATTGYKSLEYVHNLEKDIQDISNKFKTSPVNLIPAINKYREEVKVQ 734

Query: 768 ----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKI 820
               ++LQ    +R ++  + DL+   I D+N +  ++    + D  ELK ++D  ++ +
Sbjct: 735 ENTIKELQ----RRLVKFEINDLTNEAI-DINGVKVLVKSFKDKDVNELKDLVDRAKEIL 789

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +I+    S  +KA  +  VT+DL+++++A ++ + +A  +  G GGGRP  AQ+GG 
Sbjct: 790 KSCVILFG--SNNEKAIFVSGVTKDLINKYHAGNIVK-NAATIADGNGGGRPDFAQAGGK 846

Query: 881 NGNKADQAIAGVASFLK 897
           +GNK  +A+     ++K
Sbjct: 847 DGNKVKEALEKTLEYIK 863


>gi|262038170|ref|ZP_06011567.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747818|gb|EEY35260.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 870

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 331/914 (36%), Positives = 530/914 (57%), Gaps = 74/914 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +TT 
Sbjct: 4   NELRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRITTY 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   LD+ R
Sbjct: 63  QKCIRT----NDLENVGKTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLDKER 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD------ 178
           L+++V++ D+EA+K+W +  G+ A++++R+  +DN+W+    G CGPCSEI++D      
Sbjct: 119 LWVSVFETDDEAYKIWNEEIGVPAERMVRLGEDDNWWAAGPVGSCGPCSEIYYDTQNMGK 178

Query: 179 ---QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              +  C PG      +EG+R++EIWNLVF ++ +        LP+ +IDTG G+ER+A+
Sbjct: 179 NNEEINCKPG------DEGDRFLEIWNLVFTEWNRLEDGTLVPLPEKNIDTGAGIERIAS 232

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           V+Q K +N++ DLF  +I+  E+V  +K E ++    +VI DH+R+S FLI DG+LP+NE
Sbjct: 233 VIQNKKSNFETDLFMPIIKGIEKVLDIKKEEHDEA-VKVIADHIRASVFLIGDGVLPSNE 291

Query: 296 GRGYVLRRIMRRAMCYARL----LGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEET 350
           GRGY+LR+I+RRA     +    +   E + +H L +   E M   YP+L++    IE+ 
Sbjct: 292 GRGYILRKIIRRAFGVGSVAKEKVFEKEDIFLHKLVSYVVETMKDGYPDLVEKSEYIEKV 351

Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+ERF  TL  G  +L   ++       + L+ +++FKLYDT G P ++ + IL   
Sbjct: 352 IKIEEERFSTTLKNGTEMLSEEIAKLKKQNKKKLSSEISFKLYDTFGFPFELTKLILNNE 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +    F + LEEQ +R++   + +     +       EK+G T+F GY+      F
Sbjct: 412 GIE-VSEEDFEKRLEEQITRSQRSRVTISDMIKDDFIDEFFEKHGKTEFTGYE-----NF 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             + + +   K                        E +SG   E++FD+TPFYAE+GGQ+
Sbjct: 466 ADKGKILYAAKS-----------------------EGMSG--YEMIFDKTPFYAESGGQV 500

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINH 587
            DTG  I  G          K   +F+H   V +GI+  E + V L ID + R+ +  NH
Sbjct: 501 SDTG-KITAGEFEGRVVDVVKKRDVFIHQVEVIKGIIPAENTTVELEIDVERRKDIQRNH 559

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATH+LH  L   LG+HV Q+GS +  D LRFD +H +PI+   ++ IE  VN++I  N+
Sbjct: 560 TATHILHKVLREKLGTHVEQSGSLVESDRLRFDFSHYEPISKEMIEEIEYEVNNVILSNI 619

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                  N ++A   GA AL   KY D VRVV +        S  LCGG HV STGEI  
Sbjct: 620 KTKIDYENIQEAKNRGAMALFSDKYGDIVRVVEIP-----GFSIELCGGAHVKSTGEIGF 674

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I SE+ I +G+RRI A TG ++  ++ G +EKL  +++ +K  + N+V  +++   E+
Sbjct: 675 FNIESETGISSGVRRIIATTGHKSLEYVNGIEEKLAEISATMKSDENNIVEVLKKYKNEF 734

Query: 768 RKLQLIHAK---RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L+  + +   R L+  + ++     +I+ V  ++      +  ELK ++D  ++K+QS
Sbjct: 735 KDLEKAYMQLQSRLLKYEINEIFEGVEEISGVKVLAKTFENKNIDELKEIVDRGKEKLQS 794

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GII+L   S  +KA  +  VT+DL+ +  A D+ +++A+    G GGGRP  AQ+GG NG
Sbjct: 795 GIIILG--SNNEKAIFVAGVTKDLISKIKAGDIVKVAAQT-ADGNGGGRPDFAQAGGKNG 851

Query: 883 NKADQAIAGVASFL 896
           +   +A+     ++
Sbjct: 852 SAVKEAVEKSKEYI 865


>gi|237750646|ref|ZP_04581126.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229373736|gb|EEO24127.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 897

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 346/908 (38%), Positives = 518/908 (57%), Gaps = 88/908 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  ++EFF+  GH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 18  IRAKYIEFFKSKGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  L
Sbjct: 77  LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSLL 136

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180
           Y+T+++ D+EAF+LW     + + +I R+   DNFW M +TGPCGPCSEI+ DQG     
Sbjct: 137 YVTIHESDDEAFELW--CEHIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFFH 194

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E   GG      EG+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + +
Sbjct: 195 SEEDYFGG------EGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVIALKE 248

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--------------------NIVNHRVIVDH 278
            + NN+D  LF  ++Q  +++TG  Y  +                    +I + RVI DH
Sbjct: 249 GEINNFDSSLFAPIMQCIKELTGKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADH 308

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R+ +FL+A G+    EGRGYVLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y 
Sbjct: 309 ARAVAFLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYS 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
            LI+ K  ++E  R+E+ERF +T++ G+ L    L  + +  ++  NG++AFKLYDT+G 
Sbjct: 369 YLIERKNALQEQCRAEEERFFETIESGMALFQTELDSMRQKNEKSFNGEIAFKLYDTYGF 428

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+ QD+L   GL G+D+  F + ++EQ+ R++AH  G G    +  + +L  +YG  +
Sbjct: 429 PLDLTQDMLRELGL-GVDMQGFEKCMQEQKDRSKAHWKGSGDSVKDGDFNALLSEYGKNE 487

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVF 515
           F+GY+ +                        V S + A++    + VE   +GQ+  V+ 
Sbjct: 488 FVGYERM-----------------------SVESKILALLDSNFKRVESLQAGQEGWVML 524

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           + TPFY E+GG +GD G    D  I  Q+ D QK   G+ +   +V   +L+    +   
Sbjct: 525 ESTPFYPESGGPVGDKGILKNDSHIVTQVLDTQKYF-GLNLSK-VVATSMLKVGDLVKAQ 582

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D  +R ++  +HSATHLLH+AL  ILGSH++Q GS +  + LRFD +H K ++  EL+ 
Sbjct: 583 VD-SSRFEIIKHHSATHLLHYALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVDELEQ 641

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ IA++ P +   M  E A A GA AL G KY + VRV+++        S  LC
Sbjct: 642 IESLVNEEIAESSPQICETMGIEQAKAKGAMALFGEKYGESVRVITLG------DSVELC 695

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK---V 751
           GG H+ +T EI   YIV ESS+ +G+RRIEA+ G+ A ++     E +KSL   LK   V
Sbjct: 696 GGIHIHNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYNYGKAALESIKSLKEQLKAQDV 755

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
            QG  V +++   +E R+     +  K + +V+ L   ++  V  +   +  V++KE K 
Sbjct: 756 LQG--VAKLQNALKEARE-----SANKAKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKD 808

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           ++D  + + +   I+LV    E    V +      +    A    +  A++L GG GGGR
Sbjct: 809 IIDRAKNENEKVAILLV---TESGGKVSLTAGVKGVSSLKAGAWVKQVAQIL-GGNGGGR 864

Query: 872 PHMAQSGG 879
              A +GG
Sbjct: 865 DDFATAGG 872


>gi|46203377|ref|ZP_00051608.2| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 473

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/462 (59%), Positives = 341/462 (73%), Gaps = 2/462 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWRLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA  LWKKI+G   DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A               ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPTLETRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+PAL  EMG A+PEL++++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPALVREMGQAFPELVRSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTAAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            A++ Q+  ARA   G G   TE +WF +KE+ GAT+F+GY+
Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYE 461


>gi|270307496|ref|YP_003329554.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153388|gb|ACZ61226.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 876

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 352/905 (38%), Positives = 534/905 (59%), Gaps = 55/905 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    +T+ QK
Sbjct: 12  LRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPRMTSCQK 71

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C R      D+++VG  + H T FEMLGNFS G YFK+ AI  AW+ +T+  ++   RL+
Sbjct: 72  CFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPAERLW 126

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---C 182
           +TVY +D+EA  LWK+  G+S  +I+R+   DNFW  A ++GPCGPCSEI +D G+   C
Sbjct: 127 VTVYLDDDEAIALWKE-QGVSEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDFGQEMGC 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                  S + G R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++Q K N
Sbjct: 186 GKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQSKKN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300
            Y+ D+F  +++ + Q++G KY  +   +   R++ +H R  +FLIADG++P   GRGYV
Sbjct: 245 VYETDIFAPIVEKACQLSGKKYGCDTATDRALRIVSEHSRGITFLIADGVIPDKAGRGYV 304

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ + R LG  +P ++ +  A+   M   YPEL + +  + E + SE+ RF +
Sbjct: 305 LRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELKKRQTYVLEMIASEEARFSE 364

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL  GL LL+ ++  +   +I +G  AFKLYDT+G P+++  +I   RGL+ +D+  F  
Sbjct: 365 TLATGLELLEEIVRQIKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDLGGFEA 422

Query: 421 ALEEQRSRARA-HSLGLGSGTTEKIWFSLK--EKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            +E QR++AR+       +  T +   +++  EK   T F+GY+L R             
Sbjct: 423 EMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEK---TCFVGYELTR------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           QK          S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I  
Sbjct: 467 QK----------STIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R ++ +      G+F+H   V  G L+   S    ID + RR ++ NH+ATH+L  AL
Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVISGCLKISESAAAHIDEERRRDIARNHTATHILQTAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q GS +TP+ LRFD +H +P+T  E++  E+ VND I +NLPV    M   
Sbjct: 577 RQVLGEQVQQRGSVVTPERLRFDFSHLRPMTKDEIRRAEEFVNDKIRRNLPVYAEEMPYR 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+  G  AL G KY DRVRV+ V        S+ LCGGTHVS++GEI L  IVSESS+ 
Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIVSESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775
           AG+RRIEA+TG+ A +++  Q + L  L+  L+ +    + ++ E+ EE   L+  + + 
Sbjct: 694 AGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESLRKLAELKEEIDTLKKTVQNL 753

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +R++     +    K  D   +  ++S    V++  L+   D L+ K+ SG+I+L G   
Sbjct: 754 ERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVS 812

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K   L +VT DL+++ ++A ++ +  +++  GGGGGG+P+MAQ GG +  K D+A+  
Sbjct: 813 EDKPFFLCMVTPDLIEKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKAKLDEALQA 871

Query: 892 VASFL 896
           V   L
Sbjct: 872 VKGML 876


>gi|308174440|ref|YP_003921145.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607304|emb|CBI43675.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 878

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 353/911 (38%), Positives = 538/911 (59%), Gaps = 60/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEK 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P  SE     E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V+
Sbjct: 180 Y-GNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPAN 294
           Q+   N+D DLF  +I+A+E+++G  Y G + V     +VI DH+R+ +F ++DG LP+N
Sbjct: 239 QDVPTNFDTDLFMPIIEATERISGDAY-GKDAVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +G + P M  L+P +   M + YPE+ + +  I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+    +    I++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   +E+QR RAR     +GS   +    +L++    + F+GY  +      K +
Sbjct: 417 VDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAV------KAE 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KV+                  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+GD G
Sbjct: 469 AKVI-----------------ELLHDGQLISEAQEGDTVQILLDKTPFYAESGGQIGDRG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+ATHL
Sbjct: 512 VLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIPVAID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IVS
Sbjct: 632 LKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E ++ Q 
Sbjct: 687 ESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELKEAQR 746

Query: 773 IHAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827
            +     +L NVE  +   K+ D+  +  +  +V++K+   L++++D L+ K+ S +I+L
Sbjct: 747 ENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIIL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K ++   VT+DL+++  +A  + + +A+V  GGGGGGRP MAQ+GG    K +
Sbjct: 807 GAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVC-GGGGGGRPDMAQAGGKQPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+A    ++K
Sbjct: 865 EALASAEDWIK 875


>gi|225572273|ref|ZP_03781137.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040257|gb|EEG50503.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM
           10507]
          Length = 868

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 356/905 (39%), Positives = 527/905 (58%), Gaps = 60/905 (6%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FLEFF+  GH  L S SLIP ND +L+  NSGM P K  FTG E P  + VTT QKC+R 
Sbjct: 2   FLEFFESKGHLALKSFSLIPQNDKSLLLINSGMAPMKPYFTGAEIPPRKRVTTCQKCIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  RLY ++Y
Sbjct: 62  G----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPDRLYPSIY 117

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
            +DEEAF++W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE      PG 
Sbjct: 118 LDDEEAFEIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCKKPGC 176

Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
           +   + +RYIEIWN VF QFE   +     L + +IDTGMGLER+ATV+QE  + +D+D 
Sbjct: 177 TVGCDCDRYIEIWNNVFTQFENDGEGHYTELEQKNIDTGMGLERLATVVQEVDSIFDVDT 236

Query: 249 FKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
              L     ++ G++Y  +    V+ R+I DH++SS+F+I+DGI+P NEGRGYVLRR++R
Sbjct: 237 NCALRNRVCELAGVEYLKDEKTDVSIRLITDHVKSSTFMISDGIMPTNEGRGYVLRRLIR 296

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RA  + RLLG     M  L   +       YPEL + K  I   L +E+ +F KT+D+GL
Sbjct: 297 RAARHGRLLGIDGKFMAKLSATVIEGSKDGYPELEEKKDFIFNVLNNEENQFNKTIDQGL 356

Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
            +L  +   + K   ++L G+ AFKLYDT+G PLD+ ++IL  +G   +D   F +A+E 
Sbjct: 357 RILADLEEKMEKAGTKVLTGEEAFKLYDTYGFPLDLTKEILEEKGRQ-VDEEGFQKAMEI 415

Query: 425 QRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QR +AR     ++ +G  +   ++I  S+      T+F+GY+ L                
Sbjct: 416 QRKQAREAREVSNYMGADATVYDEIDPSV-----TTEFVGYEHL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538
                     S +  +  + EIV   + GQ+  V   +TPFYA  GGQ GDTG  +  +G
Sbjct: 455 -------AFESEITVLTTEKEIVSSLMEGQRGTVFVKKTPFYATMGGQEGDTGLISTANG 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  Q+ +  K   G + H   +  G+L  +  + L ++ Q RR    NHSATHLL  AL 
Sbjct: 508 V-FQVEETIKLRGGKYGHVGHMVSGMLSVQDVVRLEVNVQGRRDTEKNHSATHLLQKALK 566

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV Q GS +TPD LRFD  H + +T  E++ +E  VN  I + LPV T IM+ E+
Sbjct: 567 VVLGAHVEQKGSLVTPDRLRFDFAHFQAMTPEEMEKVEKLVNQEIQEALPVRTDIMDIEE 626

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  +GA AL G KY++ VRVVS+     G  S  LCGGTHVS+T +I+L  +VSES I A
Sbjct: 627 AKKTGAMALFGEKYDEEVRVVSM-----GEFSKELCGGTHVSNTSQILLFKLVSESGIAA 681

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG     +    +  L   A   K S G +  ++  +  E + L   +   K
Sbjct: 682 GVRRIEALTGNGVMEYYKNLESLLNQAAKAAKTSTGELSDKIFHMQNEIKALHSENESLK 741

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++  + L        ++  V  ++  +  VD   L+ + D L++K++ G+++L+ ++  
Sbjct: 742 SKMAQDSLGDVMNQVTEVKGVKLLAVKLENVDVSGLRDLGDQLKEKLEEGVVVLITVNS- 800

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K ++L + T+  + +  +A +L + +A ++ GGGGGGRP+MAQ+GG +  K ++A+  +
Sbjct: 801 GKVNLLAMATDGAMKQGAHAGNLIKAAAAIV-GGGGGGRPNMAQAGGKSPEKVEEALQKI 859

Query: 893 ASFLK 897
              L+
Sbjct: 860 PEILE 864


>gi|169334468|ref|ZP_02861661.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259185|gb|EDS73151.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM
           17244]
          Length = 874

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 343/904 (37%), Positives = 527/904 (58%), Gaps = 46/904 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FLEF++  GH  L S SL+P ND +L+  NSGM P K  F G+E P  + VTT
Sbjct: 6   LNELRKMFLEFYESKGHLRLESFSLVPHNDKSLLLINSGMAPLKPYFIGEEVPPKKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+DNVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ LT++  LD+ 
Sbjct: 66  CQKCIRTP----DIDNVGKTARHGTFFEMLGNFSFGDYFKKEAIAFAWEFLTEKIGLDKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY++VY+ D+EA ++WK   GL+ ++I R+   DNFW +   GPCGPCSEI+ D+GE  
Sbjct: 122 KLYVSVYENDDEAAEIWKNDIGLTDNRITRLGKEDNFWEIG-LGPCGPCSEIYVDRGEEY 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               P  G   + +RY+E+WNLVF QF++  +     L   +IDTGMGLER+A  +QE  
Sbjct: 181 GCDRPTCGVGCDCDRYMEVWNLVFTQFDKDKEGNYNKLEHPNIDTGMGLERLAAYVQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  ++++    +++G KY    N+ V+ RVI DH+RSS F+ +DGIL +NEGRGY
Sbjct: 241 NIFEVDTIRYILDYICEISGKKYGVNENDDVSIRVITDHIRSSVFMASDGILTSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VL+RI+RRAM + +LLG     M  +   +    G AYP L + +  I + +  E+E+F 
Sbjct: 301 VLKRILRRAMRHGKLLGIEGHFMEGVAKKVIEISGEAYPALREKETTILKLINIEEEKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T+++GL ++D ++++L K + L G  AFKLYDT+G PL++ ++IL  +GL  +D   F 
Sbjct: 361 ETVNQGLSMIDELIANL-KGDTLGGLDAFKLYDTYGFPLELTEEILEEKGLK-VDKNGFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++EQ+ +AR+        + +    +      +T+F GY+ L     + E   ++   
Sbjct: 419 KAMQEQKDKARSARNNKEIVSYKGDLTNFIANLPSTEFSGYESLSDKGKVIE---IIKDN 475

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             ID+ N           +GEI           V+F++TPFYA +GGQ+ D G    D +
Sbjct: 476 EAIDILN-----------EGEI---------GLVIFNRTPFYATSGGQVHDIGKIEDDKV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++  V K  +  FVH   +  G L  +    +T+D QNR     NHSATHLLH AL  
Sbjct: 516 NAKVKSVTKSGDK-FVHEVEIISGSLEADKEYSMTVDKQNRLNTERNHSATHLLHKALKE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  + LRFD +H + +T+ EL  IE  VN  I     V     + ++A
Sbjct: 575 VLGEHVNQAGSYVDSERLRFDFSHFEKVTNEELDEIEKRVNAEILNKDEVNYFETSIDEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA AL G KY   VRVV +     G +S  LCGG HV++T +I +  I+SESS+ +G
Sbjct: 635 RKLGATALFGEKYGSNVRVVKM-----GDYSIELCGGCHVNNTNDISMFKILSESSVASG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           +RRIEAITG+ A    + +  +L+++   L+++  N++ +V+E+  + + L  +L   ++
Sbjct: 690 VRRIEAITGKCAIEESLEKYHELQTIKDKLRLNNNNIIEKVDELLNKNKSLLKELEAFRK 749

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEK 834
           +   +V         DVN    + ++VD     +L+ + D ++ K+++ I+ LV ++ EK
Sbjct: 750 EANKDVVSGIIDNAFDVNGTKCVFAKVDGLNVNDLRELSDKVKDKVENVIVFLVSVAGEK 809

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
              +     E + D FN     +  A V  G GGGGRP MAQ+G  + +KAD A+     
Sbjct: 810 GFMIASASKEAVKDGFNCGKFIKDVA-VSIGSGGGGRPDMAQAGIKDISKADMALENAKG 868

Query: 895 FLKK 898
           F+K+
Sbjct: 869 FIKE 872


>gi|189499310|ref|YP_001958780.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|189494751|gb|ACE03299.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 886

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 348/903 (38%), Positives = 518/903 (57%), Gaps = 67/903 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR +FL++F+K  H ++ S+ +IP  DPTL+FTN+GM  FK++F  +    Y      
Sbjct: 4   SDIRQSFLDYFEKKEHTIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRAADT 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L + R
Sbjct: 64  QKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTEVWSLPKER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY TVY +D+E+ ++WK  + +  D I++    DNFW M ETGPCGPCSEI  D  + + 
Sbjct: 124 LYATVYQDDDESLEIWKTATDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTDDLS 183

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G    ++++  R IE+WNLVF+Q+ ++  +    LPK  +DTGMG ER+  VLQ K +NY
Sbjct: 184 GRELVNADD-HRVIELWNLVFIQYNRKADRSLEPLPKKHVDTGMGFERITAVLQSKGSNY 242

Query: 245 DIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           D D+F  L  A    TG+ Y    +G   +  RVI DH R+ +F I DG +P NEGRGYV
Sbjct: 243 DTDIFAPLFDAITAHTGVAYTATLDGERDMAMRVIADHARTLTFAITDGAVPGNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ YAR L   +P++  L+  +   MG+ +PEL + +  +E+ ++SE+E F  
Sbjct: 303 LRRILRRAVRYARKLDCNQPVLYRLVGVIADTMGAVFPELKKQQATVEKIVKSEEESFLV 362

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL RG+ +   + + L   K++ ++G+ AF+LYDT+G PLD+ + +    GL G+D   F
Sbjct: 363 TLGRGIEIFGEIAAALKASKEKSISGEDAFRLYDTYGFPLDLTRLMASEEGL-GVDEKGF 421

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQ+ RAR         T ++  +   E+ G T F+GY+ L               
Sbjct: 422 GACMKEQKERARKDRKQKQQITGDEGQWQWFEQKGPTVFLGYETLE-------------- 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                              + +I+   ++G ++++V DQTPFYAE+GGQ GD G   G+ 
Sbjct: 468 ------------------TEAQIIGVRIAGSQMQLVLDQTPFYAESGGQTGDRGRIEGEN 509

Query: 539 IRLQITDVQKKAEGIFVHHA--IVER--GILRTEMSLVLT--------IDYQNRRQLSIN 586
               + D +K  + + VH A  + +R  G   T  S+  +        +D + R     N
Sbjct: 510 YIFDVIDTRKDGD-VIVHVAGTVYDRATGGEVTPESIAFSQAVQVQAQVDKETREATERN 568

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS + PD LRFD +H + +++ EL+++E  VN+ I + 
Sbjct: 569 HTATHLLHAALRKVLGEHVQQKGSLVGPDRLRFDFSHFEKVSAGELEAVEAEVNERIREA 628

Query: 647 LPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             +V    +  E A+  GA A  G KY DRVRVV V     GV S  LCGGTHVS+ G+I
Sbjct: 629 GALVKHADIPYEAALEKGALAFFGDKYADRVRVVEVP----GV-SMELCGGTHVSNVGQI 683

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            L  I+SESSI +GIRRIEA++G+ A   L G  ++L+ +   L+   + +V  RV+E+ 
Sbjct: 684 GLFKIMSESSIASGIRRIEAMSGKAAEEVLWGDYQELQQVRQLLRTGGEESVAARVQELL 743

Query: 765 EEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           EE + L  +L   K  L L+       +   VN     + + D   +  L+S+   L++K
Sbjct: 744 EERKILDKKLQDMKLSLLLDKAIGELEQADTVNGCRIFVMKYDDSGADTLRSLGQFLREK 803

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I  G+ +L G  + K   V     E + +   NA +L + +A ++  GGGGG+P  A +G
Sbjct: 804 IGRGVGLLAGEEQGKVTLVGFAGDEAIRECGLNAGELVKKAAAMV-QGGGGGKPGFATAG 862

Query: 879 GPN 881
           G N
Sbjct: 863 GKN 865


>gi|331091263|ref|ZP_08340104.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404710|gb|EGG84249.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 879

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 353/911 (38%), Positives = 523/911 (57%), Gaps = 58/911 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 6   VNELRKMFLDFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIKWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+EDEEA+++W K  G++ ++I +    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEEDEEAYEIWNKEMGIAPERIFKFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+   K     L + +IDTGMGLER+A+++Q+  
Sbjct: 181 GCGRPDCTVGCECDRYMEIWNNVFTQFDNDGKGHYEELEQKNIDTGMGLERLASIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L +    + G +Y  E +  V+ RVI DH+RS +F+I+DGI+P+N GRGY
Sbjct: 241 SIFDVDTLKALREHICTLAGTEYGKEYSKDVSIRVITDHIRSVTFMISDGIMPSNNGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG     +  L   +       YPEL + K  I   +R E+E+F 
Sbjct: 301 VLRRLLRRACRHGRILGIEGQFLTKLCETVINGSKDGYPELEEKKDAIFNVIRQEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  ++  +   K+  L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLGILSEMIQEMTEKKETTLSGENAFKLYDTYGFPLDLTKEILEEKGF-DIDEEG 419

Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           F  ++EEQR +AR     ++ +G  +   ++I  S+      T+F+GYD L         
Sbjct: 420 FKTSMEEQRVKARKARGVSNYMGADATVYDEIDPSV-----TTEFVGYDHLT-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + EIV     G+K  +  ++TPFYA  GGQ GD G
Sbjct: 467 ---------------YDSDITVLTTENEIVNTLSEGEKGTIFVNRTPFYATMGGQEGDKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + +  K   G   H   V +G      ++ L+++   R     NHSATHL
Sbjct: 512 LITTEHAEFAVEETVKLLGGKVGHVGKVTKGSFTVGDAVNLSVEENGRANTCKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +TPD LRFD  H   +T  E+   E+ VN  IA+N  V+T 
Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFVHFSAMTPEEIAKTEELVNAEIAKNNAVITE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +MN E A A+GA AL G KY + VRVVS+     G  S  LCGGTHV++TG I    I+S
Sbjct: 632 VMNIEQAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVANTGMITTFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + +G+RRIEA+TG    ++    +++L   A   K +   +  +VE +  E + LQ 
Sbjct: 687 EAGVASGVRRIEALTGDGVFAYYREMEKELNEAAKVAKATPAQLKDKVEHMLSEIKSLQS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L  + L        ++  +  ++  + +VD   L+ + D L++K+  G++++
Sbjct: 747 EVEALKSKLAKDALGDVMNQITEVKGIKLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVI 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              S   K +++ +VT+  +++  +A +L +  A ++ GGGGGGRP+MAQ+GG N     
Sbjct: 807 AS-SANGKVNLIAMVTDGAMEKGAHAGNLIKGIAALV-GGGGGGRPNMAQAGGKNPAGIP 864

Query: 887 QAIAGVASFLK 897
            AIA V   L+
Sbjct: 865 DAIAKVQEVLE 875


>gi|311069223|ref|YP_003974146.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869740|gb|ADP33215.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 878

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 354/916 (38%), Positives = 536/916 (58%), Gaps = 70/916 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLNFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT E     D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDE 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ ED+EA++LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDDEAYELWAQKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P  SE     E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V+
Sbjct: 180 Y-GNDPADSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANE 295
           Q    N+D DLF  +I+A+E ++   Y  +++ N   +VI DH+R+ +F ++DG LP+NE
Sbjct: 239 QNVPTNFDTDLFMPIIKATETISSEAYGQDDVKNTAFKVIADHIRTVAFAVSDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ + +  I + +++E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKTININRPFMYDLVPVVAEIMVDFYPEVKEKEEFIAKVIKTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ERF +TL+ GL +L  ++    KD+   +++G   FKLYDT+G P+++ ++      +  
Sbjct: 359 ERFHETLNEGLAILSEMIKK-EKDKGSSLISGTDVFKLYDTYGFPVELTEEYAEDEQMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + +E+QR+RAR     +GS   +    +L++    + F+GY   +        
Sbjct: 417 VDHKGFEEEMEKQRARARNARQDVGSMQVQG--GALRDVTVESTFVGYTNTKSD------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           SS+V+ ++Q GE++EEA  G+ ++++ ++TPFYAE+GGQ+GD G
Sbjct: 469 ----------------SSVVE-LLQDGELIEEAHEGETIQILLNETPFYAESGGQIGDKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   ++ITDVQK   G  VH  +VE G L+  M +   ++   R  +  NH+ATHL
Sbjct: 512 YLRSAQAVVRITDVQKAPNGQNVHEGLVESGTLQKGMHVTAEVEDHMRSGVIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEVIVNEKIWESIPVSID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IVS
Sbjct: 632 LKPINEAKEMGAMALFGEKYGDIVRVVQV-----GGYSLELCGGCHVKNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TGQ A   +  Q   LK +A  LK +  +V  RV  +  + ++ Q 
Sbjct: 687 ESGIGAGTRRIEAVTGQGAYLEMNSQIGLLKQVAGELKTNVKDVPKRVAALQADLKEAQR 746

Query: 773 IHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +     +L          NV+D+S  K+     ++  ++  D   L++++D L+ K+ S
Sbjct: 747 ENESLLAKLGNAEAGAILSNVKDISGVKV-----LAEKVNAKDMNHLRTMVDELKAKLGS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L G  +  K ++   VT+DL+D+  +A  L + +A+ + GGGGGGRP MAQ+GG  
Sbjct: 802 AVVVL-GAVQNDKVNISAGVTKDLIDKGLHAGKLVKQAAE-MCGGGGGGRPDMAQAGGKQ 859

Query: 882 GNKADQAIAGVASFLK 897
             K   A+  V  ++K
Sbjct: 860 PEKLQDALTSVEEWVK 875


>gi|15894955|ref|NP_348304.1| alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|20532257|sp|Q97IG3|SYA_CLOAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15024640|gb|AAK79644.1|AE007677_6 Alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509092|gb|ADZ20728.1| alanyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 881

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 340/918 (37%), Positives = 523/918 (56%), Gaps = 68/918 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR ++L FF+K  H  LPS SLIP ND +L+  N+GM P K  FTG + P    VTT
Sbjct: 6   LNDIRESYLSFFEKKEHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFTGLQTPPKTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T+RH TFFEMLGNFSFG YFKE  I  AW+ +T+     + 
Sbjct: 66  CQKCIRTG----DIENIGKTSRHGTFFEMLGNFSFGDYFKEEVISWAWEYITEVLKFPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           R+YIT+Y +D+EAFK+W + +G+   +I R    DNFW    +GPCGPCSE+ FD+ E  
Sbjct: 122 RIYITIYLDDDEAFKIWTEKAGVDPSRIFRFGKEDNFWEHG-SGPCGPCSEMHFDRRE-K 179

Query: 184 PGGLPGSS-----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           P  +         ++ +  IE WNLVF QF++        L   +IDTGMGLER+AT++Q
Sbjct: 180 PDLIKTREKFIELQDKDEVIEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIMQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              + ++ID  + ++ A  ++  +KY  N  N V+ R+I DH+RS +F+I+DGILP+NEG
Sbjct: 240 NTDSIFEIDTIREVLDAVCKICNVKYGENHKNDVSLRIITDHIRSVTFMISDGILPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  +  +  L   +      AY EL + +  I+  +  E++
Sbjct: 300 RGYVLRRLLRRAARHGKTLGIEKTFLCGLCDVVIKNSKGAYKELEEKQDYIKNVIEIEEK 359

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD G+ +L   +  L     ++++G+ AF+LYDT+G P+++ Q+IL  +G+  ID
Sbjct: 360 RFDETLDSGMEILKNYIDELSLENKKVMSGEKAFRLYDTYGFPVELTQEILEEKGIE-ID 418

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +  F+  +E+Q++RAR A       G   K+   L E    T+F+GY+            
Sbjct: 419 MNDFHSEMEKQKNRARDAREESNYMGKEIKLIDKLPESV-TTKFVGYN------------ 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      +    S V+ +++  E V     G+   VV ++TPFYAE GGQ+GD G 
Sbjct: 466 -----------STSTDSKVEVLIKDDEFVSTINEGESGIVVTEETPFYAEMGGQIGDKGI 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G     ++ D +    G  +H   V +G +    ++ L ++Y+ R+ +  NH+ATH+L
Sbjct: 515 IFGKNGEAKVVDCKNNISGKIIHIVQVVKGSIEKNENVTLEVNYKKRKDICKNHTATHML 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  ++GSH++Q+GS +  + LRFD TH   +T  E+  +E  VND I     V T I
Sbjct: 575 QAALKKVVGSHINQSGSYVDNERLRFDFTHFTALTDEEILKVEAMVNDEIMAAYDVKTDI 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  +GA AL   KY +RVRVVSV     G  S  LCGGTHV+++GEI L  I+SE
Sbjct: 635 MSVDEAKKTGAMALFDEKYGNRVRVVSV-----GDFSRELCGGTHVNNSGEIGLFKIISE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRK 769
           S + AGIRRIEAITG+ A  +    D  ++++   LK S+ +++ ++     E+ E+ ++
Sbjct: 690 SGVAAGIRRIEAITGKEAVRYTEENDNLIRNIEQELKCSKKDILNKINQYHSELKEKEKE 749

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
           + ++  K KL    E+     + +V+ + ++ SEV       L+ + D ++ KI  G+++
Sbjct: 750 INIL--KGKLASGFEENILSSVKEVSGVKYVASEVKGISGDTLRELCDKVRNKIDDGMVL 807

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGP 880
           L     EK   V +          NAV       KV+       GG GGGRP MAQ+GG 
Sbjct: 808 LASKDGEKVQFVAMASK-------NAVKKGVHCGKVIKEVASMCGGNGGGRPDMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
           +G K + A+  V + ++K
Sbjct: 861 DGEKLETALKEVGNIMEK 878


>gi|157738295|ref|YP_001490979.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|205829978|sp|A8EWI6|SYA_ARCB4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157700149|gb|ABV68309.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 851

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 358/906 (39%), Positives = 519/906 (57%), Gaps = 73/906 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +LEFF+  GHE++ S  L+P +DPTLMFTN+GMV FK+IFTG    P  +  T+ Q
Sbjct: 3   IRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +L
Sbjct: 62  LCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           ++TV++ D+EAF +W K   ++  +I+R    DNFWSM +TG CGPCSEIF+DQGE    
Sbjct: 122 WVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + +   NN+
Sbjct: 180 GEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D   FK +I+  E+++       NI ++RVI DHLR+ SF+++ GIL  NEGR YVLRRI
Sbjct: 240 DSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  L+G+ +P M  LL  L   MG  Y EL++ K  IEE L  E++RF KT+D 
Sbjct: 300 LRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTIDL 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  L      +I +G  AFKLYDT+G PLD+ +D+L  RGL  +D+  F++ +  
Sbjct: 360 GMSLFNEELEKT--KDIFSGVTAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMNN 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++ A+A   G G  + E  +  L EK+G+ +F+GY+                       
Sbjct: 417 QKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYN-------------------NTTY 457

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            + + +++    ++ +I+E+  +G    V+ D+TPFYA +GGQ GD G A+ D   + I 
Sbjct: 458 KSKIIALLDEHFKEVKILEKDSTGW---VMLDKTPFYATSGGQNGDIG-ALEDNKHIAIV 513

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +   K  G+ +    V    L+   S+   +   NR +++ +HSATHLL  AL  +LG  
Sbjct: 514 EETTKFHGLNLSKVKVVNSSLKQGESVDAIV--VNRNEVAKHHSATHLLQSALKIVLGDT 571

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           VSQ GS      LRFD T+ K +T  ++  +ED VN +IA+ +      +  E A   GA
Sbjct: 572 VSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKKGA 631

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            A+ G KY D VRVVS  +ED  V     CGGTHV +T +I   YIV ES + AG+RRIE
Sbjct: 632 IAMFGEKYGDVVRVVS--FEDVSVE---FCGGTHVRNTADIGSFYIVKESGVSAGVRRIE 686

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+ G  A                 +K ++ +++ ++ EI  E +   +I   +KL+  ++
Sbjct: 687 AVCGTAA-----------------IKYTK-DIISKMNEIQAEVKNSDVILGIKKLKEQIK 728

Query: 785 DL------SCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           DL      S  K +       +N    I+S V++ +LK ++D  +   +   I L+    
Sbjct: 729 DLKKEIETSQSKTSSPIEETIINDTKVIVSVVENGDLKKIVDDTKNANEKVAIFLLQAKD 788

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K   VLIV      +   A D  +  A ++ GGGGGGRP  AQ+GG + +K  +A    
Sbjct: 789 DK---VLIVAGSKNTN-IKAGDWIKNIAPIV-GGGGGGRPDFAQAGGKDTSKIQEAKTKA 843

Query: 893 ASFLKK 898
             + K+
Sbjct: 844 LDYAKE 849


>gi|110597674|ref|ZP_01385959.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340794|gb|EAT59271.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 901

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 350/927 (37%), Positives = 527/927 (56%), Gaps = 78/927 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y    
Sbjct: 17  NSREIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGTRPYNRAA 76

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T  + L  
Sbjct: 77  DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELMTGVWKLPA 136

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY TVY +D+E+F++WK  + +S + I+R    DNFW M ETGPCGPCSEI  D  + 
Sbjct: 137 DRLYATVYQDDDESFQIWKDHTSISPEHILRFGDKDNFWEMGETGPCGPCSEIHIDLTDD 196

Query: 183 IPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G  L    +   R IE+WNLVF+Q+ +Q+      LP   +DTGMG ER+A V+Q K+
Sbjct: 197 ASGKSLVNVGD--YRVIELWNLVFIQYNRQSDGRLEPLPNKHVDTGMGFERVAAVMQGKS 254

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+FK L     ++TG++Y  +    H    RVI DH R+ +F ++DG +P+NEGR
Sbjct: 255 SNYDTDVFKPLFDRITEITGVRYGASMDEPHDIAMRVIADHARTLTFALSDGAMPSNEGR 314

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y++ LGY EP++  L+  L   MG  +PEL + +  + + +RSE+E 
Sbjct: 315 GYVLRRILRRALRYSKNLGYNEPILHQLVGTLADSMGDVFPELKKQRDTVSKIIRSEEES 374

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + + V+S +   K  ++ G  AFKLYDT+G P D+ + +    GL  +D 
Sbjct: 375 FIVTLDRGIEIFNDVVSKVRSAKGTVIKGVDAFKLYDTYGFPFDLTRLMASDEGLQ-VDG 433

Query: 416 ISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F   ++EQ++RARA       +    ++ +WFS +    AT F+GY+ L         
Sbjct: 434 EGFEHCMQEQKTRARADRKEKHQIEEDGSQWLWFSDQH---ATSFVGYEQLELPV----- 485

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           R + C+                            + +K+ ++ D+TPFYAE+GGQ+GD G
Sbjct: 486 RIIACKH---------------------------AKEKLLILLDKTPFYAESGGQVGDRG 518

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT------------EMSLVLTIDYQNR 580
                  RLQ+TD  K  + I          IL T            ++S   ++D+  R
Sbjct: 519 WIETASYRLQVTDTVKDGDAIVHVVTAAFDKILDTAVNPADLTIDEGQLSAEASVDHHIR 578

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +    NH+ATHLLH AL  ILG HV Q GS + P+ LRFD +H   ++ AE+  +E +VN
Sbjct: 579 QDTERNHTATHLLHGALRRILGQHVQQKGSYVNPERLRFDFSHFSKMSDAEIARVEASVN 638

Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           + I +   V     +  +DAIA GA A  G KY D VRVV V     G+ S  LCGGTHV
Sbjct: 639 EEIRRAEEVQKHADIPYDDAIAKGALAFFGDKYADLVRVVEVP----GI-SVELCGGTHV 693

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN--VV 757
            + G I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK ++G+  V 
Sbjct: 694 DNIGRIGLFKIVSESSVASGVRRIEALTGKSAEKLLWQEYAELQQIRQLLK-AKGDEPVA 752

Query: 758 GRVEEIWEEYRKLQL-IHAKR---KLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            R+ E+ +  ++L+  +H  R    LQ L+V+  S  +++    ++ ++   D   L+S 
Sbjct: 753 SRIVELMDARKELEKELHEIRIGSLLQSLSVDLQSAPEVSGCKLLAKVVEGADGDALRSA 812

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGG 870
             AL++ +     +L  + ++ K S+ +  ++  +     +D  +L  +V     GGGGG
Sbjct: 813 GLALREAVPCAAGLLCSV-QDGKVSLAVFASDKAVKEL-GIDAGKLIREVAQHVQGGGGG 870

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           +P  A +GG N +  ++A+    + +K
Sbjct: 871 KPEFATAGGKNPDGVNKALEAFTTAVK 897


>gi|315636586|ref|ZP_07891820.1| alanine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315479095|gb|EFU69794.1| alanine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 851

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 358/906 (39%), Positives = 519/906 (57%), Gaps = 73/906 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +LEFF+  GHE++ S  L+P +DPTLMFTN+GMV FK+IFTG    P  +  T+ Q
Sbjct: 3   IRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +L
Sbjct: 62  LCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           ++TV++ D+EAF +W K   ++  +I+R    DNFWSM +TG CGPCSEIF+DQGE    
Sbjct: 122 WVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENFN 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + +   NN+
Sbjct: 180 GEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D   FK +I+  E+++       NI ++RVI DHLR+ SF+++ GIL  NEGR YVLRRI
Sbjct: 240 DSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  L+G+ +P M  LL  L   MG  Y EL++ K  IEE L  E++RF KT+D 
Sbjct: 300 LRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTIDL 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  L      +I +G  AFKLYDT+G PLD+ +D+L  RGL  +D+  F++ +  
Sbjct: 360 GMSLFNEELEKT--KDIFSGITAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMNN 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q++ A+A   G G  + E  +  L EK+G+ +F+GY+                       
Sbjct: 417 QKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYN-------------------NTTY 457

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            + + +++    ++ +I+E+  +G    V+ D+TPFYA +GGQ GD G A+ D   + I 
Sbjct: 458 KSKIIALLDEHFKEVKILEKDSTGW---VMLDKTPFYATSGGQNGDIG-ALEDNKHIAIV 513

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +   K  G+ +    V    L+   S+   +   NR +++ +HSATHLL  AL  +LG  
Sbjct: 514 EETTKFHGLNLSKVKVVNSSLKQGESVDAIV--VNRNEVAKHHSATHLLQSALKIVLGDT 571

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           VSQ GS      LRFD T+ K +T  ++  +ED VN +IA+ +      +  E A   GA
Sbjct: 572 VSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKKGA 631

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            A+ G KY D VRVVS  +ED  V     CGGTHV +T +I   YIV ES + AG+RRIE
Sbjct: 632 IAMFGEKYGDVVRVVS--FEDVSVE---FCGGTHVRNTADIGSFYIVKESGVSAGVRRIE 686

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+ G  A                 +K ++ +++ ++ EI  E +   +I   +KL+  ++
Sbjct: 687 AVCGTAA-----------------IKYTK-DIISKMNEIQAEVKNSDVILGIKKLKEQIK 728

Query: 785 DL------SCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           DL      S  K +       +N    I+S V++ +LK ++D  +   +   I L+    
Sbjct: 729 DLKKEIETSQSKTSSPIEETIINDTKVIVSVVENGDLKKIVDDTKNANEKVAIFLLQAKD 788

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K   VLIV      +   A D  +  A ++ GGGGGGRP  AQ+GG + +K  +A    
Sbjct: 789 DK---VLIVAGSKNTN-IKAGDWIKNIAPIV-GGGGGGRPDFAQAGGKDTSKIQEAKTKA 843

Query: 893 ASFLKK 898
             + K+
Sbjct: 844 LDYAKE 849


>gi|256962036|ref|ZP_05566207.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|293383058|ref|ZP_06628976.1| alanine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388219|ref|ZP_06632740.1| alanine--tRNA ligase [Enterococcus faecalis S613]
 gi|312907353|ref|ZP_07766344.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909969|ref|ZP_07768817.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|256952532|gb|EEU69164.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|291079723|gb|EFE17087.1| alanine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082403|gb|EFE19366.1| alanine--tRNA ligase [Enterococcus faecalis S613]
 gi|310626381|gb|EFQ09664.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289927|gb|EFQ68483.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 880

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--GDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817
            ++      K   QL     N +     K + DVN + +I ++V+ K   +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKV--DGGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|304440318|ref|ZP_07400207.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371070|gb|EFM24687.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 874

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 345/909 (37%), Positives = 519/909 (57%), Gaps = 64/909 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEFF+   H +L S  LIP  D +L+   +GM P K  FTG+  P  + V+T QK
Sbjct: 9   IRKEFLEFFKSKDHLILKSFPLIPKQDKSLLLIGAGMAPMKKYFTGELTPPSKRVSTCQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R G    D++NVG T+RH TFFEMLGNFSFG YFK  AI  AW+ LT+  +L + +L+
Sbjct: 69  CIRTG----DIENVGLTDRHATFFEMLGNFSFGDYFKHEAISWAWEFLTEHLELPKDKLW 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TV+ EDEEA+K+W+    +  ++I+++   DNFW + E GP GPCSEI+ D+GE    G
Sbjct: 125 VTVFYEDEEAYKIWRDEIHIPEERIVKMGKEDNFWEL-EVGPSGPCSEIYVDRGEEYGCG 183

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P      E +R+IE+WNLVF QF++        L   +IDTGMGLER+ATVLQ   N +
Sbjct: 184 DPDCKPGCECDRFIEVWNLVFTQFDKDEAGVYHPLAHPNIDTGMGLERIATVLQNTNNIF 243

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +ID  K++I+  E+++  KY+ +N   ++ RVI DH R+ +F+I+D + P+NEGRGYVLR
Sbjct: 244 EIDAIKNIIEKIEELSNYKYKTDNKKDISVRVITDHARAMTFMISDTVRPSNEGRGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA  + RLLG     +  +   +       Y +L + +  I+E +R E+E+F +T+
Sbjct: 304 RLIRRAARHGRLLGIKRAFLSEIADLIIDSWSVEYDDLKENREKIKEVIRIEEEKFLETI 363

Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           D+G+ +L+  L  L K+  ++L GD AFKLYDT+G P+D+  +IL   G   +D   F++
Sbjct: 364 DQGMNILNSYLEELDKENTKVLPGDKAFKLYDTYGFPIDLTIEILEDSGYE-VDRKGFDE 422

Query: 421 ALEEQRSRARA----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKV 475
            +EEQR RAR       +G  S  +E  +  L      T+F GY D    SK ++     
Sbjct: 423 NMEEQRRRARESRDHDQIGWTSKESEHYYEDLN-----TEFTGYSDDESDSKIVR----- 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                              IV  GE+V+ A  GQ+   V D+TPFY E GGQ+GD G   
Sbjct: 473 -------------------IVLNGEVVDSACEGQRAIFVLDKTPFYGEGGGQVGDIGTVT 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D   + I D +K ++GI +    V  GI +    +   ID + R  +  NHS THLLH 
Sbjct: 514 SDNFEIDIIDTKKTSKGIVLMIGDVTAGIAKVGSDVHTEIDVERRNNIRRNHSVTHLLHK 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV+Q GS +  D +RFD TH + I+  +LK IE+ VN  I + LPV T I N
Sbjct: 574 ALKEVLGNHVNQAGSLVRDDYMRFDFTHFEAISQEDLKKIEEIVNKEIFRALPVETIITN 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA  L   KY D VRVV +     G  S  LCGGTHV +T EI +  I+ E  
Sbjct: 634 PKEAAELGAVGLFEEKYGDIVRVVKM-----GDFSIELCGGTHVKNTSEIGMFKILQEGG 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQ 771
           I +G+RR+E ITG     +L    E++  ++  +K ++  +  ++E    E+ E  ++++
Sbjct: 689 ISSGVRRVECITGPAVYKYLNENIEQIDRISKLVKANKSEIEHKIETTQNELKEAQKEIE 748

Query: 772 LIHAKRKLQLNVEDLSCHKIA-DVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +I  K K +  V+++   K   D  F + +    +D   L+ + D ++ K+ S +++   
Sbjct: 749 II-KKDKAKSEVDNVLDTKFEIDGGFGLVYKFENMDVSTLRDLADTVKDKLGSAVVVFST 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ E K + +   + ++  ++NA  + R  AK+  GG GGGRP MA +G  +  K D+A+
Sbjct: 808 VN-EGKLNFVAAASNEISKKYNAGSIVREVAKIC-GGSGGGRPTMATAGASDLTKVDEAL 865

Query: 890 AGVASFLKK 898
               +F KK
Sbjct: 866 ----NFAKK 870


>gi|297529280|ref|YP_003670555.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297252532|gb|ADI25978.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 878

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 359/915 (39%), Positives = 526/915 (57%), Gaps = 68/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F I DG LP+NE
Sbjct: 239 QDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARVIRTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL--- 410
           ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ ++     G+   
Sbjct: 359 ERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEAGMTVD 418

Query: 411 -AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
            AG +     Q    + +R    S+ +  G        L +    ++F+GYD L  +   
Sbjct: 419 HAGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKDESRFVGYDELVAA--- 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V AIV+ G +VEE  +G++ +++ D TPFYAE+GGQ+ 
Sbjct: 469 --------------------STVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQIA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +     + DVQK   G  +H  IVERG ++        +D   R ++  NH+A
Sbjct: 509 DQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKRMRIVKNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I ++LPV
Sbjct: 569 THLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLPV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
                  E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  
Sbjct: 629 DIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLFK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E ++
Sbjct: 684 IVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELKE 743

Query: 770 LQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
           L+  +   A R   +  E L+  ++ DVN +  + ++V   D  +L+++ D L++K+ + 
Sbjct: 744 LERENESLAARLAHMEAEHLT-RQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L   ++  K  ++  VT+DL+ + F+A  L +  A    GGGGGGRP +AQ+GG + 
Sbjct: 803 VIVLAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRC-GGGGGGRPDLAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
           +K  +A+  V +++K
Sbjct: 861 SKVGEALGYVETWVK 875


>gi|241890033|ref|ZP_04777331.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863655|gb|EER68039.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 873

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 339/909 (37%), Positives = 520/909 (57%), Gaps = 73/909 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF + GH++ PS+SL+P +DP+L++ NSG+   K  F G+E P    +T  
Sbjct: 7   TQIRRMYLDFFVEKGHKIEPSASLVPIDDPSLLWINSGVATLKKYFDGREIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT E    L++
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEKWLGLEK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            +L +T++ ED EA+ LWK + GL  ++IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLSVTIHPEDTEAYDLWKNVIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEE 179

Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E +RY+E+WN+VF Q+          LP  +IDTGMGLER
Sbjct: 180 ADTWSPKEEMYPGG------ENDRYLEVWNVVFSQYNHNADGTYSELPAKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           + +VLQ+   N+D DLF  +I+  E+++G KY       V  +VI DH+R+  F IADG 
Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVSTEQDVAFKVIADHIRTVVFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RRA+ +A++LG     M  L   +   M   YP + ++   +++ 
Sbjct: 294 LPSNEGRGYILRRLLRRAVRFAKVLGLNNSFMYKLTDVVAEIMVDYYPNVKESASFVKDV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E++RF +TL  G  +L+ + + + KD  ++++G  AFKLYDT G P+++ ++     
Sbjct: 354 ILKEEDRFHETLHEGETILNNIANEV-KDTTKVISGKDAFKLYDTFGFPIELTEEYAEEL 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +DI  FN+ +E+Q+ RAR+      S   +   +S  +  G ++F GY  L     
Sbjct: 413 GLT-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--KIVGDSEFTGYTSL----- 464

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQ 527
             ++ KVL                 AIV + + + E   G++V +VVF++TPFYAE+GGQ
Sbjct: 465 -TDEGKVL-----------------AIVDREDNLLENYKGEEVVKVVFERTPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G    +G + ++ DV+K  +   +H   V  G L       L ++   R  +  NH
Sbjct: 507 VADKGLVTAEGFKAEVVDVKKLPDKRHIHFVKVVEGELVVGKEYKLEVNRPYRLNVEKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I   L
Sbjct: 567 TATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNAL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T  M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH  ++ E+ +
Sbjct: 627 EIKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNVNSAEVGI 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES + AG+RRIEA+TG+ A  +L  Q+E L+S+    K +  NVV +V  +  + 
Sbjct: 682 FKIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANSSNVVEKVSSLQSDI 741

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKI 820
           +KL     K  LQ  + +   + + +       VN ++ ++   +   LK ++D  + K+
Sbjct: 742 KKLS--KEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKL 799

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           ++ +I    ++ E K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G  
Sbjct: 800 ENYVIAFASVN-EDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAK 857

Query: 881 NGNKADQAI 889
           N +  D+A 
Sbjct: 858 NKDNIDKAF 866


>gi|295706696|ref|YP_003599771.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804355|gb|ADF41421.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 877

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 361/915 (39%), Positives = 526/915 (57%), Gaps = 68/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT  K    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDKWIGFDA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TV+ EDEEAFK+W +  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLSVTVHPEDEEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 180 YGNDLTDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I+A+E ++G KY  N+  +   +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I+  +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRVVKNE 357

Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+        + + G+  F+LYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDENMK- 416

Query: 413 IDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           ID   F + +E QR RAR     + S+ +  G        L E   A++F+GYD      
Sbjct: 417 IDHAGFEREMEAQRERARAARQDSSSMQVQGGV-------LGEVTVASEFVGYD------ 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                             N V ++V+AI+  GE+V+ A +G + +V+   TPFYAE+GGQ
Sbjct: 464 -----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G         ++ DVQK   G  V    V  G L    +   T+D +NR  +  NH
Sbjct: 507 IADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGETYTATLDEENRSAIVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL   LG+HV+Q GS +T D LRFD +H   +T  EL+ IE  VN+ I  ++
Sbjct: 567 TATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSI 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L
Sbjct: 627 SVQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I AG RRIEA+TG+ A   +  Q   LK  A+ +K +  ++VGRVE + EE 
Sbjct: 682 FKIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEI 741

Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R LQ  +     +L N+E  +       I  VN ++  ++  D   L++++D L++K++S
Sbjct: 742 RNLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLES 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L     E K +++  VT+DL+ + +           + GGGGGGRP MAQ+GG + 
Sbjct: 802 AVIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGGGGRPDMAQAGGKDA 860

Query: 883 NKADQAIAGVASFLK 897
           ++ ++A+  V  ++K
Sbjct: 861 SQIEKALGTVEEWVK 875


>gi|291529066|emb|CBK94652.1| alanyl-tRNA synthetase [Eubacterium rectale M104/1]
          Length = 886

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/913 (38%), Positives = 512/913 (56%), Gaps = 58/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 7   VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ 
Sbjct: 67  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177
           RLY ++Y ED+EAF +W K  G+  D+I R   +      DNFW     GPCGPCSEI++
Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGPCSEIYY 181

Query: 178 DQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+GE    G P      + +R++E+WN VF QF          L   +IDTGMGLER+A 
Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           V+Q+  + +DID  K +     +++G KY  + +  V+ R+I DH+RSS+FLI+DG++P+
Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I + L  
Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL  +G  
Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGENAFKLYDTYGFPVDLTAEILEEKGFT 421

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             D   F   +E QR +AR A       G    ++  +  +   T+F GYD L  +    
Sbjct: 422 -YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEI-TTEFTGYDKLTDT---- 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +    ++VE    G K  V+   TPFYA  GGQ GD
Sbjct: 476 -------------------AEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     + D  K     + H   V  G++RT     L++D + R     NHSAT
Sbjct: 517 KGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I + + V 
Sbjct: 577 HLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVR 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I +  I
Sbjct: 637 TDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKVFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  E + L
Sbjct: 692 LSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMAEMKAL 751

Query: 771 QLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q  +   K +   + L     ++ DVN    ++  +  VD   L+ + D+L++K+  G+I
Sbjct: 752 QSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L   S E K +++ + T+  +    +A +L + +++KV   GGGGGRP+MAQ+GG N  
Sbjct: 812 VLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVG--GGGGGRPNMAQAGGKNPA 868

Query: 884 KADQAIAGVASFL 896
               AIA V   L
Sbjct: 869 GIPDAIASVKDAL 881


>gi|229828473|ref|ZP_04454542.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM
           14600]
 gi|229793067|gb|EEP29181.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM
           14600]
          Length = 921

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 345/915 (37%), Positives = 518/915 (56%), Gaps = 51/915 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH ++ S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 35  VNQLRRMYLDFFESKGHLVMKSFSLVPHNDDSLLLINAGMAPLKPYFTGQEIPPRRRVTT 94

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L+  
Sbjct: 95  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKREAIHWSWEFLTRVLKLEPD 150

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177
           RLY T++ +D+EA+++W +  G++ D + R   +      DNFW    +GPCGPCSEI++
Sbjct: 151 RLYPTIFIDDDEAYEIWTREVGVAPDHVYRFGKDPETGASDNFWEHG-SGPCGPCSEIYY 209

Query: 178 DQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+GE     P  + G   EG+R++EIWN VF QF          L + +IDTGMGLER+A
Sbjct: 210 DRGEKYGNGPDDVMGG--EGDRFMEIWNNVFTQFNNDGHGNYTELAQKNIDTGMGLERLA 267

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q+    ++ID  K +      ++G  YE N  + ++ R+I DH+RS++F+I+DGI+P
Sbjct: 268 VVMQDVETVFEIDTMKAIRDEVCALSGKTYEANASDDISIRLITDHIRSTTFMISDGIMP 327

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA  + R+LG +   M  L   +  E    YPEL + +  I   L 
Sbjct: 328 SNEGRGYVLRRLIRRASRHGRMLGISGEFMARLADVVIRESRDGYPELAEKQEFIRRVLT 387

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ +F  T+D+GL +L  +   L    + +L+G  AF+LYDT+G P+D+  +IL  +G+
Sbjct: 388 EEERKFNATIDQGLAMLAQLEDQLSARGERVLSGADAFRLYDTYGFPVDLTAEILEEKGM 447

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F  A+EEQR++AR           E   +   +   ++ F+GYD L  S  + 
Sbjct: 448 T-YDREGFAAAMEEQRAKARGARKASNYMGKEATVYDDIDNSISSSFVGYDKLEASSKIS 506

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
               VL            + +  A  + GE+V+    G +  V+ D+TPFY   GGQLGD
Sbjct: 507 ----VLT-----------TEVNPAEDKYGELVDALTDGSRGTVIVDETPFYGTMGGQLGD 551

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G         ++ +      G   H   +  G+L+    + L +D   R  ++ NHSAT
Sbjct: 552 SGLIETAEGTFRVDETIHLLGGRIGHVGQMISGMLKVGDRVTLQVDADRRANIARNHSAT 611

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD  H   +++ E++ +ED VN+ IA ++PVV
Sbjct: 612 HLLHRALREVLGDHVQQKGSYVDDKKLRFDFVHFSAMSTEEIRKVEDLVNERIAADIPVV 671

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM++EDA  +GA AL G KY D VRVV +     G +S+ LCGGTHV  TG+I    +
Sbjct: 672 TEIMSQEDAKKTGAMALFGEKYGDEVRVVEM-----GDYSTELCGGTHVGRTGKIQAFKV 726

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE    AG+RRIEA+TG    ++    + +L   A+  K    ++V ++  + EE + L
Sbjct: 727 ISEVGSSAGVRRIEALTGPAVFAYYEDIERELNEAATAAKTKPSDLVEKIGHMQEEIKGL 786

Query: 771 QL------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +         A ++   NVED +  +I  V F++  +  VD   L+ + D L+ K+  GI
Sbjct: 787 EAELESMKAAAAKEALGNVED-AVKEIKGVKFLAKALEGVDMNGLRDLGDQLKAKLGEGI 845

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++L   + + K  ++   TE       +A +L +  A ++ GGGGGGRP+MAQ+GG N  
Sbjct: 846 VLLAS-ANDGKVVLMATATEGAQKAGAHAGNLIKGIAGLV-GGGGGGRPNMAQAGGKNPA 903

Query: 884 KADQAIAGVASFLKK 898
               A+A     L++
Sbjct: 904 GIPAALAEAERVLEE 918


>gi|315651872|ref|ZP_07904875.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485874|gb|EFU76253.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 885

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 348/906 (38%), Positives = 505/906 (55%), Gaps = 80/906 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FLEFF+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + V T
Sbjct: 12  VNQIRKKFLEFFESKGHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVCT 71

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 72  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLDPN 127

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W K  G+ AD+I +    DNFW   E GPCGPCSE+++D+GE  
Sbjct: 128 RLYPSVYLDDDEAFEIWNKEIGIPADRIYKFGKEDNFWEHGE-GPCGPCSEVYYDRGEKY 186

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   + +RY+EIWN VF QF    K     L + +IDTGMGLER+A  LQ+  
Sbjct: 187 GCGKPTCTVGCDCDRYMEIWNNVFSQFNSDGKGNYTELIQKNIDTGMGLERLAVALQDVE 246

Query: 242 NNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D  K L+    ++  T  K +    V+ R+I DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 247 SIFEVDTIKALLDKVAELAHTSYKEDEKKDVSLRLITDHIRSCTFMISDGIMPSNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG  +  + +L   +       YPEL + K +I + L  E+ +F 
Sbjct: 307 VLRRLLRRAARHGRMLGIKDTFLANLANKVIELSKDGYPELEEKKEMILKVLTEEENKFN 366

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +  +L K    I++G+ AF+LYDT+G PLD+ ++I+  +G + +D   
Sbjct: 367 KTIDQGLSILSDIEENLSKSGQRIISGEDAFRLYDTYGFPLDLTKEIIEEKGFS-VDEDG 425

Query: 418 FNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           FN+A+E QR++ARA       +G+  T  I+ SL  K  +  F GYD L  +        
Sbjct: 426 FNKAMEAQRNQARAARKATNYMGADVT--IYQSLDPKLTSV-FEGYDSLTDT-------- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            + A+  + EIVE    G    ++ D+T FYA  GGQ  D G  
Sbjct: 475 ---------------GKITALTTEDEIVEAVAEGDHGTIILDKTSFYATMGGQNADIGII 519

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + DV K       H   V +G+ +   ++   +D +NRR+ + NHSATHLLH
Sbjct: 520 KTANSVFNVVDVIKLGGNKIGHVGYVSQGMFKLGDTVETVVDAENRRRTAANHSATHLLH 579

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +    LRFD TH K ++  EL  +E  VN  I ++LPVVT +M
Sbjct: 580 KALREVLGNHVEQAGSYVDARRLRFDFTHFKSLSKEELDDVEALVNREINKSLPVVTDVM 639

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  SGA AL G KY   VRVVS+     G  S  LCGGTHV +T +I L  I+S++
Sbjct: 640 DVESAKKSGAMALFGEKYQKDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKIISDN 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+T           + ++   A  LK ++  +V + E + EE + L+  +
Sbjct: 695 GIAAGVRRIEALTNDGVIEFYKNIENRMNECAKLLKTNENELVSKTESVLEEIKTLKSEN 754

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L  E L     S  +I  + F++  +S V+  EL+++ D L+  +  G      
Sbjct: 755 EKLKAKLASEALGDSKESIEEIGGIKFIAMHVSGVEMNELRNLGDKLKSDVDDG------ 808

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--------------GRPHMA 875
                    ++V+  D+  + N + +A   A  +G   G               GRP++A
Sbjct: 809 ---------MVVLASDVDGKVNLLCMAGDKALAVGAHAGNIIKGIAAIVGGGGGGRPNIA 859

Query: 876 QSGGPN 881
           Q+GG N
Sbjct: 860 QAGGKN 865


>gi|295111268|emb|CBL28018.1| alanyl-tRNA synthetase [Synergistetes bacterium SGP1]
          Length = 879

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 351/905 (38%), Positives = 508/905 (56%), Gaps = 53/905 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL+F+++ G    PS SLIP +DP+L+FT +GMVP K  + G  +P Y  + T QK
Sbjct: 9   LREMFLKFWEEKGSHRCPSFSLIP-DDPSLLFTIAGMVPLKPYYLGIRQPPYPRIVTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI  AW+ LT    LD  RLY
Sbjct: 68  CVRT----NDIENVGRTARHHTFFEMLGNFSWGSYFKKEAITWAWEFLTDRIGLDPNRLY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y +DEE+ ++W + +GL  D+I+R   ++N+W M +TGPCGPCSEI++D+G     G
Sbjct: 124 ATIYQDDEESREVWHRQAGLPEDRILRFGQDNNYWFMGDTGPCGPCSEIYYDRGPDYGCG 183

Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  G   + +RY+EIWNLVF QF++Q       LP  +IDTGMGLER+A+V+Q    +Y
Sbjct: 184 KPSCGVGCDCDRYLEIWNLVFTQFDRQKDGSLPNLPHKNIDTGMGLERLASVVQGVDTDY 243

Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           + DLF  LI+ +    G++Y   G N +  RVI DH+RS +F++ADG+LPAN+G GYVLR
Sbjct: 244 ETDLFTPLIRHTCARAGIQYGQGGRNDMAVRVIADHVRSVAFMLADGVLPANDGPGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+ + RLLG+    +   +P L   MG  Y ELI  +  IE+ +  E+ERF +TL
Sbjct: 304 RLLRRAVRFGRLLGFEGAFLCEYMPILIDLMGDPYRELIDQRPTIEQIITVEEERFQRTL 363

Query: 363 DRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            +G  L +   + L   G+ E+  G+V F LYDT+G P ++ +++   +G A +D   F 
Sbjct: 364 QQGTDLFEAETARLAAAGRREV-PGEVVFTLYDTYGFPPELTREMADEQGFA-VDEAGFK 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR RARA S    S     ++  L+ + GAT+F GY     +  M          
Sbjct: 422 AAMQQQRDRARASSKQKKSALAGDVYTELENEGGATRFTGY-----ASAM---------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                  G   +   + ++G    + V G  + E+V D+TPFYAE GG++GDTG      
Sbjct: 467 -------GAGKVTAILTKEGR--RDHVEGNGEFELVLDETPFYAERGGEVGDTGTIRDGE 517

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             L++ +      G+ VH   +  G +R   S+    D   R+ +  NH+ THLLH AL 
Sbjct: 518 TTLEVLNTVPHG-GVIVHRVRMTEGSVRVGDSMTAEADDARRQAIRRNHTGTHLLHEALG 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +T   LRFD TH  P+T  +++ +E  VN  I +N+PV T     E+
Sbjct: 577 RVLGRHVRQAGSLVTDRFLRFDFTHHTPLTDGQIEEVERIVNGEILRNVPVSTAEHTLEE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL   KY D VRVV+V        S  LCGG HV +TG+I    ++ E SI +
Sbjct: 637 ARELGAKALFDEKYGDVVRVVTVPD-----FSMELCGGLHVRATGDIGSFKVLREESIGS 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---HA 775
           G RRI A+TG      +       + L   L   +  +  + +++ EE R LQ      A
Sbjct: 692 GTRRILAMTGMEVVELMQVLFGLRRRLMGILSADEEGLEAKAKDLAEELRALQKRAQERA 751

Query: 776 KRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + +L  NV+  +   ++           +V S  L+ V D ++      + +L  +  E 
Sbjct: 752 RHELTDNVDRFVERRRVGGAVLHIGRFPDVKSDVLRDVGDRVKAGPDPSVALLASVD-EN 810

Query: 835 KASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            A  LIV+ +D   +   NA  + R ++ VL GG GGGRP  AQ GG +G K D+A+   
Sbjct: 811 GACTLIVMADDRAVKLGANAGAIVREASAVL-GGKGGGRPSTAQGGGRDGEKLDEALERA 869

Query: 893 ASFLK 897
           A  LK
Sbjct: 870 AEVLK 874


>gi|291524925|emb|CBK90512.1| alanyl-tRNA synthetase [Eubacterium rectale DSM 17629]
          Length = 886

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/913 (38%), Positives = 512/913 (56%), Gaps = 58/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 7   VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ 
Sbjct: 67  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177
           RLY ++Y ED+EAF +W K  G+  D+I R   +      DNFW     GPCGPCSEI++
Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGPCSEIYY 181

Query: 178 DQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+GE    G P      + +R++E+WN VF QF          L   +IDTGMGLER+A 
Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           V+Q+  + +DID  K +     +++G KY  + +  V+ R+I DH+RSS+FLI+DG++P+
Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I + L  
Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL  +G  
Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEILEEKGFT 421

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             D   F   +E QR +AR A       G    ++  +  +   T+F GYD L  +    
Sbjct: 422 -YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEI-TTEFTGYDKLTDT---- 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +    ++VE    G K  V+   TPFYA  GGQ GD
Sbjct: 476 -------------------AEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     + D  K     + H   V  G++RT     L++D + R     NHSAT
Sbjct: 517 KGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I + + V 
Sbjct: 577 HLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVR 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I +  I
Sbjct: 637 TDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKVFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  E + L
Sbjct: 692 LSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMAEMKAL 751

Query: 771 QLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q  +   K +   + L     ++ DVN    ++  +  VD   L+ + D+L++K+  G+I
Sbjct: 752 QSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L   S E K +++ + T+  +    +A +L + +++KV   GGGGGRP+MAQ+GG N  
Sbjct: 812 VLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVG--GGGGGRPNMAQAGGKNPA 868

Query: 884 KADQAIAGVASFL 896
               AIA V   L
Sbjct: 869 GIPDAIASVKDAL 881


>gi|73662452|ref|YP_301233.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|83305860|sp|Q49Y56|SYA_STAS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72494967|dbj|BAE18288.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 876

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 339/920 (36%), Positives = 534/920 (58%), Gaps = 79/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  F+++F + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQNFIDYFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E    ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMAMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
           + LY+T++ ED+EA+++W +  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 KLLYVTIHPEDKEAYRIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGED 179

Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ER++E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 FGQDDPAEEMYPGG------ENERFLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E+V+G  Y E +N  V  +VI DH+R+ +F IADG 
Sbjct: 234 MASLAQNVRTNYETDLFMPIIHEVEKVSGKTYLENDNYDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYRLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ +++        ++G  AFKLYDT+G P+++ ++I     
Sbjct: 354 IKSEEERFHETLEEGLAILNNLVAQAKTSTHEISGKDAFKLYDTYGFPVELTEEIATQEN 413

Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L+ ID+ +F + +++QR RAR     + S+ + S   +KI          + F+GYD++ 
Sbjct: 414 LS-IDMQTFEEEMQQQRDRARQARQNSQSMQVQSEVLKKITTD-------STFVGYDVM- 464

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                  D+               +S++  I+Q GE+VE A +G+ +  +  +TPFYA +
Sbjct: 465 -------DK---------------ASVITDIIQNGELVESAEAGETIYFILRETPFYAVS 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    +   + +T+V K   G  +H   ++ G ++    +  +++++ RR + 
Sbjct: 503 GGQVADQGTISNENFEIAVTEVTKAPNGQNLHKGEIQFGTVKKNAEVSASVNHKERRSIK 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  E+ ++E  VN+ I 
Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEEIDTVERRVNEEIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            ++ V  + M   +A   GA AL G KY + VRVV++        S  LCGG HV++T E
Sbjct: 623 NSIEVDIQEMPISEAKQLGAMALFGEKYGEIVRVVNM-----APFSIELCGGIHVNNTAE 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I L  IVSES   AG+RRIEA+TG+ A  +L     +  ++ S +KV S   V+ ++  +
Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKSAFLYLETIQSQFNAVKSQVKVKSDDQVLEKIVHM 737

Query: 764 WEEYRKL--QLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQ 817
            +E ++L  QL    +++  L + D++ +++ ++N +  + +EVD   +K ++  MD  +
Sbjct: 738 QDEEKELTKQLEQKNKEVTSLKMGDIT-NQVEEINGLKVLATEVDVPNAKAIRETMDDFK 796

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+Q  +I+L+  + + K S++  V + L D+  A D+ +  A V+ GG GGGRP MAQ 
Sbjct: 797 SKLQDTVIVLIS-NIDGKVSLVATVPKALTDKVKAGDIIKNMAPVV-GGKGGGRPDMAQG 854

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG       +++  +  ++K
Sbjct: 855 GGTEPKNITESLRFIKDYIK 874


>gi|239827827|ref|YP_002950451.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|239808120|gb|ACS25185.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 877

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 358/914 (39%), Positives = 525/914 (57%), Gaps = 66/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRKMFLDFFKEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DRLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEE 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    N++ DLF  +I+A+EQ++G KY  +    V  +VI DH+R+ +F I DG LP+NE
Sbjct: 239 QGVPTNFETDLFMPIIRATEQISGEKYGVDKEKDVAFKVIADHIRAVTFAIGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I++ +++E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKQLHIERPFMYELVPVVGEIMNDFYPEVKEKAAFIQKVIKNEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-- 411
           ERF +TL  GL +L  V+    +    I++G+  F+LYDT+G P+++ ++     G+   
Sbjct: 359 ERFHETLHEGLAILASVIQKEKERGSNIISGEDVFRLYDTYGFPVELTEEYAHEEGMEVD 418

Query: 412 --GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             G +     Q    + +R    S+ +  G        L +    ++F+GYD L      
Sbjct: 419 HDGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKTESEFVGYDQLHAQ--- 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  IV+ G++V E   G++ +++ D TPFYAE+GGQ+ 
Sbjct: 469 --------------------STVAVIVKDGQLVNEVKEGEEAQIILDVTPFYAESGGQIA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +  +  + DVQK   G  +HH IVE+G LR   +    ID   R  +  NH+A
Sbjct: 509 DQGWIENETTKAFVKDVQKAPNGQHLHHIIVEKGTLRKGETYTAQIDEAKRASIIKNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++PV
Sbjct: 569 THLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIPV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
                   +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  
Sbjct: 629 EIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLFK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IVSES I AG RRIEA+TG+ A   +  Q   L+ +A  LK +   +V R++ +  E R+
Sbjct: 684 IVSESGIGAGTRRIEAVTGEAAYRFMNEQITLLQEVAQKLKTNPKEIVNRIDALMNEIRQ 743

Query: 770 LQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGI 824
           LQ  +     +L N+E  +  +K+ +VN +  + S+V   D   L++++D L++K+ S I
Sbjct: 744 LQRENESLAARLGNMEAANLVNKVKEVNGIPVLASKVNANDMNHLRTMVDELKQKLGSAI 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+L  +  E K +++  +T DL+++ ++A  L +  A V  GGGGGGR  MAQ+GG + +
Sbjct: 804 IVLAAVQGE-KVNLIAGITNDLIEKGYHAGKLIKEVA-VRCGGGGGGRADMAQAGGKDPS 861

Query: 884 KADQAIAGVASFLK 897
           K  +A+  V  ++K
Sbjct: 862 KVGEALQYVEQWIK 875


>gi|300868714|ref|ZP_07113325.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300333275|emb|CBN58517.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 879

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 369/914 (40%), Positives = 530/914 (57%), Gaps = 72/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P     TT 
Sbjct: 11  SEIRQKFLDFYAQRGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRSPQSPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI  AW+L T+ F L    
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKQAIAWAWELCTEVFGLPPEN 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD----QG 180
           L I+V+ ED+EAF LW K  G+   +I R+   DNFW    TGPCGPCSEI++D    +G
Sbjct: 126 LVISVFREDDEAFDLWAKEIGIPPQRIQRMGEEDNFWVSGPTGPCGPCSEIYYDFHPEKG 185

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           + I        E+  R+IEI+NLVFMQ+ +        L   +IDTGMGLERMA VLQ+ 
Sbjct: 186 DDI------DLEDDTRFIEIYNLVFMQYNRDAAGNLTPLQNQNIDTGMGLERMAQVLQKV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            NNY+ DL   +++ + ++  + Y   + N  ++ +VI DH+R+   +IAD I  +N GR
Sbjct: 240 PNNYETDLIFPIVKTAAEIARIDYSQADENTKISLKVIGDHIRAVVNMIADEIRASNIGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLP---ALCTEMGSAYPELIQAKLLIEETLRSE 354
           GYVLRR++RRA+ + RL+G     +  +     ALC +   AYP + Q    I+  L  E
Sbjct: 300 GYVLRRLIRRAVRHGRLIGIEGGFITKVAETAIALCED---AYPNVRQRSAAIQAELERE 356

Query: 355 DERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +  F +TL+RG  LL  ++  L   GK++I +G  AF LYDT+G PL++ Q+I   +GL 
Sbjct: 357 EANFLRTLERGEKLLAEIIDRLQQQGKNQI-DGQDAFTLYDTYGFPLELTQEIAEEQGLT 415

Query: 412 GIDIISFNQALEEQRSRAR-AH-SLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +D+  F QA+EEQR+R + AH ++ L   G+ +K    L E   AT+F+GY        
Sbjct: 416 -VDVEGFEQAMEEQRNRGKDAHETIDLTVQGSLDK----LAENIHATEFVGYK------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                          L++ V   VK I+  G+ VEEA    +++V+ +QTPFYAE+GGQ+
Sbjct: 464 --------------QLSSNVQ--VKVILVNGKSVEEASEESEIQVILNQTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G   GD I ++I DV+K+++  FVH   +ERG LR   S+   +D   RR++  NHS
Sbjct: 508 GDRGDLSGDSILVKIEDVKKESD-FFVHFGRIERGTLRVGDSMTAQVDNSRRRRVQANHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  I+ + +SQ GS +  D LRFD    + IT+ EL+ IED +N  IA+   
Sbjct: 567 ATHLLQAALKQIVDNSISQAGSLVDFDRLRFDFNCPRSITAEELQKIEDLINSWIAEAHL 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                M   +A   GA A+ G KY D VRV+       GV S  LCGGTHVS+T EI L 
Sbjct: 627 AEIAQMPIAEAKKKGAVAMFGEKYGDVVRVIDFP----GV-SMELCGGTHVSNTAEIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE+ I +GIRRIEA++GQ    +L  +D+ ++ L    K     +  R+  +  E +
Sbjct: 682 KIVSETGISSGIRRIEAVSGQAVLDYLNVRDKVVRDLGDRFKAKPEELPNRITNLQNELK 741

Query: 769 KLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSG 823
             Q  L   K +L +   D        V     II+E   VD++ LK+  + LQ+K+ + 
Sbjct: 742 ANQKELEALKSELAIAKSDQLLSSAESVGEFKIIIAELGDVDTEALKTAAERLQQKLGNA 801

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            ++L  + +  K S++   + D+  +   A       AK+  GGGGGGRP++AQ+GG + 
Sbjct: 802 AVVLASVPEADKVSLVAAFSADVNKKGLQAGKFIGQIAKIC-GGGGGGRPNLAQAGGRDA 860

Query: 883 NKADQAIAGVASFL 896
           +K  +A+    + L
Sbjct: 861 SKLKEALESARNLL 874


>gi|269792643|ref|YP_003317547.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100278|gb|ACZ19265.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 882

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 340/890 (38%), Positives = 510/890 (57%), Gaps = 55/890 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL FF++ G    PS+SL+P +DP+L+FT +GMVPFK  F G ++P  + VTT 
Sbjct: 7   NELREMFLSFFEEKGCVRYPSASLVP-DDPSLLFTIAGMVPFKPYFLGIKEPKERRVTTA 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND+DNVGRT RHHTFFEMLGNFSFG YFK   I  AW+ LT+   +D  R
Sbjct: 66  QKCIRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWEFLTQRVGMDPDR 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TV+ +D+EA  +W    G+  D+I R+   DNFW+    GPCGPCSEI +DQG    
Sbjct: 122 LYVTVFRDDDEAESIWMSSVGVPKDRIFRMGEEDNFWAAGPVGPCGPCSEIIYDQGPEFS 181

Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  G   + +RY+E+WNLVFMQ+ +        LP+ +IDTGMGLER+++V+Q   +
Sbjct: 182 CGKPSCGVGCDCDRYLEVWNLVFMQYNRDEAGNLTPLPRKNIDTGMGLERLSSVVQWVRS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +++ DLFK +I  + Q++G+ Y    +G+  V  RVI DH+R+++F++ADG+LP+NEG G
Sbjct: 242 DFETDLFKPIIDRACQISGVAYGSSPQGDLAV--RVISDHIRAAAFMVADGVLPSNEGPG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR + + RLLG   P ++ +LP +   MG  Y EL++ +  I + L  E+ RF
Sbjct: 300 YVLRRLIRRTIRFGRLLGIDRPFLLEVLPVVEQVMGGHYGELVEHRSTINQVLELEESRF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++G  LL+  +  +      +  G+VAF+LYDT+G PL++  ++   +GL+ +DI 
Sbjct: 360 LRTLEQGSALLEEEVRRVRSRGLSVFPGEVAFELYDTYGFPLELTSEMCQEQGLS-VDIE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F +A+E QR  AR+ S    +  T  + +S   K G  +FIGYD   G           
Sbjct: 419 AFERAMERQRELARSGSKHASAAVTRTV-YSDVLKAGRIRFIGYDSEEGE---------- 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V A+V++GE+++ A  G +VEV  D TPFY E GGQ+GD G    
Sbjct: 468 -------------ARVVALVREGEMIQSAREGDRVEVFLDVTPFYGEKGGQVGDRGEIRW 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG   Q+ D Q   +G+  H A + +G LR    +   +D + R  +  +H+ATH+LH A
Sbjct: 515 DGGLAQVEDAQCPMDGLTSHLATLVQGELRVGQRVFCRVDGERRWHIRRHHTATHILHEA 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q+GS +     RFD  H  P++  E+  +ED VN +I ++  V T   + 
Sbjct: 575 LGRVLGGHVRQSGSWVGDGFFRFDFNHFSPLSDEEIARVEDLVNQVILEDRRVTTLETSM 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A   GA AL   KY   VRVVSVE       S+ LCGGTHVSS+G+I L  I  E  I
Sbjct: 635 DSAREMGAKALFDEKYGQVVRVVSVEG-----FSTELCGGTHVSSSGQIGLFKIQREEGI 689

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRI A  G  +        E +K  +S L V    V  R+ ++  E + L+    +
Sbjct: 690 GSGLRRITATAGLASLEAYRRAAEVVKGASSALGVEAETVRDRIMDLMREVKSLERELRQ 749

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +LQ+  E L     +  ++  +  +S +  +    EL+++ D++++     + +L  IS
Sbjct: 750 LRLQVKSEGLKRALEAPQEVKGIKVLSFLTEDSSPDELRAMGDSVREMYPDSVCVL--IS 807

Query: 832 KEKKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +     ++IV+  D  +     A  L + S   L G   GG+ + AQ GG
Sbjct: 808 RNGGKFMVIVMCSDGAVSKGVKAGSLIK-SLGALWGFNAGGKANTAQGGG 856


>gi|270290968|ref|ZP_06197191.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|270280364|gb|EFA26199.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4]
          Length = 881

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/920 (38%), Positives = 525/920 (57%), Gaps = 76/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRLTSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT +  FD+D 
Sbjct: 67  QKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFDMDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +DEEA K+W + +G+    I+     DNFW + E GP GP SEIF+D+GE 
Sbjct: 123 EKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDRGEE 178

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ER++EIWN+VF QF  +       LP  +IDTGMGLER+ +
Sbjct: 179 FNNLADDDPENYPGG--ENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V Q+   N++ DLF  +I   E+++G KY  + N+ V+ +VI DH R+ +F I DG +P+
Sbjct: 237 VFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVSFKVIADHARAITFAIGDGAIPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ + + L   +P +  ++P +   M   YPE++  K  IE+ ++S
Sbjct: 297 NEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF +TL  GL LL+ +++    D  ++++G  AF+L+DT+G PL++ ++    +G+ 
Sbjct: 357 EEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGME 416

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            ID   F   +++Q+ RAR A S     G    +   LK     ++++GYD L+      
Sbjct: 417 -IDEAGFADEMQKQKERARSARSNAKSMGVQSDLLTDLKT---PSEYVGYDTLK------ 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                      +D     ++++K I+Q  ++ +    G+   V+FD TPFYAE GGQ+ D
Sbjct: 467 -----------VD-----AAVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509

Query: 531 TGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G     DG +  ++ DVQ    G  +H    +R +   E S  L +D     ++  NH+
Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGE-SFTLIVDRAFHLKVEKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + P  LRFD TH   +T  +L+ +E+ +ND I   +P
Sbjct: 569 ATHLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIP 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E     GA AL   KY  +VRVVSV     G +S   CGGTHV +T EI L 
Sbjct: 629 VTTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T Q A   L G++  L+  A  LK +Q  +V  +VE++  + 
Sbjct: 684 KIVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQV 743

Query: 768 RKL-QLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK---ELKSVMDALQKK 819
           + L Q I+   +L+  +       I D    +N +  I +EV      +L+ + D  + K
Sbjct: 744 KDLNQTIN---QLEAKIAQAEVANIYDQVQEINGIRLITAEVQVSGMDQLRQMADDWKTK 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQS 877
            QS +++L G    +KA+++  V +  +     A DL + ++ KV   GGGGGRP+MAQ+
Sbjct: 801 DQSDVLVL-GAKIGEKANLIAAVKDPFVKEGLKAGDLIKAIAPKV--NGGGGGRPNMAQA 857

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG    K ++A+   + +L+
Sbjct: 858 GGSAPEKINEALKAASEWLE 877


>gi|118444620|ref|YP_878353.1| alanyl-tRNA synthetase [Clostridium novyi NT]
 gi|205830036|sp|A0Q151|SYA_CLONN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118135076|gb|ABK62120.1| alanyl-tRNA synthetase [Clostridium novyi NT]
          Length = 879

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 354/907 (39%), Positives = 527/907 (58%), Gaps = 50/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEM+GNFSFG YFK   I  AW+  T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLPKE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181
           +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D GE
Sbjct: 122 KLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                      + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q   
Sbjct: 181 IKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQGVE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +++D  K ++     +   KY  + +  V+ R+I DH+RS S +I+D +LP+NEGRGY
Sbjct: 241 TIFEVDTIKSILDKVAALANTKYGEDELKDVSLRIITDHVRSVSVMISDEVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     +  ++ ++    G AYPEL + K  I++ +  E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKDYIKKVISIEEERFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L   +  L K+  ++L+G+  FKLYDT+G PL++ ++IL  +G+  +D+ S
Sbjct: 361 ETIDSGMEILKEYIEDLEKNNKKVLSGEKVFKLYDTYGFPLELTEEILEEKGIT-VDMDS 419

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           FN+ ++EQR RARA  S     GT  KI  ++  +   T F GY+ L             
Sbjct: 420 FNKEMKEQRERARAARSESTYMGTDVKILDTIPSEI-ETTFDGYENLE------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      + S VK I++     +    G+K  +V D+TPFYAE GGQ+GD G    
Sbjct: 467 -----------LQSKVKVIIKDDAFADCINKGEKGIIVTDRTPFYAEMGGQIGDKGTISA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG   ++ D +    G  VH   V  G ++ E  ++L +D + R  +  NHSATHLLH A
Sbjct: 516 DGFMAKVQDCKNNIGGKIVHFVEVTEGSIKLEDEVLLEVDRKRRENIGKNHSATHLLHAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++G HV Q+GS +  D LRFD TH + +T  ELK +ED VND I     VVT+ M  
Sbjct: 576 LRKVVGEHVHQSGSYVDEDKLRFDFTHFESLTHEELKKVEDLVNDTIESVWDVVTKEMTI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  SGA AL   KY D+VRVV +     G  S+ LCGGTH+S+ G+I L  IVSES I
Sbjct: 636 EEAKNSGAMALFDEKYGDKVRVVKM-----GDFSTELCGGTHISNVGKIGLFKIVSESGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIHA 775
            AG RRIEA+TG +A   +  + + L+ +AS LK S+ +++ R+ +   E + K + I A
Sbjct: 691 AAGTRRIEAVTGHKALEFIEHKSDLLRQIASMLKCSEKDIINRLNQQNAELKDKDKEISA 750

Query: 776 -KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K KL    ED    +  ++  V      + +VD + L+++ D ++ KI+SG+++L G  
Sbjct: 751 LKSKLASGSEDDILKNIKEVKGVKLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GSE 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E K   + + ++D++ +  +   + R  AK+  GGGGGGRP MAQ+GG    K + AI 
Sbjct: 810 VEGKVQFIAMASKDVVSKGVHCGTIVREIAKI-AGGGGGGRPDMAQAGGRLPEKLNDAIN 868

Query: 891 GVASFLK 897
            V + ++
Sbjct: 869 EVENIME 875


>gi|303230862|ref|ZP_07317609.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514622|gb|EFL56617.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 872

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 348/909 (38%), Positives = 508/909 (55%), Gaps = 59/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQHC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 KTNFETDLIFPIIKATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A++EQR RAR                 +KE               +K    D   L
Sbjct: 414 GFDAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
             +  ++     +S V  + +  E ++ AV G ++ V+   TPF+AE GGQLGDTG  +G
Sbjct: 446 KDEELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 SMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ 
Sbjct: 566 LKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SES I
Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEAITG+ A          ++ +AS LK     V  R+ ++  E ++   +L  
Sbjct: 681 GSGVRRIEAITGRAALDAAKHDRLTIERIASELKTKPAQVEERLHQVLAEAKETAKELDQ 740

Query: 775 AKRKLQ-LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830
            ++++      D+   K  I DV F++  +      EL+   D  L K   SG++++   
Sbjct: 741 IRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGAA 800

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K   A+
Sbjct: 801 MGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMDAL 859

Query: 890 AGVASFLKK 898
                 +K+
Sbjct: 860 KAAGEAVKE 868


>gi|15613830|ref|NP_242133.1| alanyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|20139935|sp|Q9KDE6|SYA_BACHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10173883|dbj|BAB04986.1| alanyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 879

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 356/916 (38%), Positives = 531/916 (57%), Gaps = 69/916 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH++ PS+SL+P +DP+L++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQVRQMFLDFFKEKGHDVEPSASLVPHDDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT E     D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +L +TV+ ED+EA+  WK+  G+  ++IIR+    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLSVTVHPEDDEAYSYWKEKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E +RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 180 YGDQPNDPELYPGG------ENDRYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N++ DLF  +I+A+E+++G +Y  ++   V+ +VI DH+R+ +F I DG 
Sbjct: 234 MVSVIQNVPTNFETDLFMPIIRATEKISGTEYGSHHEADVSFKVIADHIRTVTFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGDIMVDFYPEVKEKAAFIQKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L+ V+     +    ++G   F+LYDT+G P+D+ ++ +  +
Sbjct: 354 VKTEEERFHETLNEGLSILEKVIDKAKSEGASTISGSDVFRLYDTYGFPVDLTEEYVEEQ 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D+  F   +E QR RAR      GS   +     L +    + FIGY  L     
Sbjct: 414 GLQ-VDLDGFEAEMERQRERARTARQQAGSMQVQD--EVLGQITVDSTFIGYKQL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + ++ IV    + +   +GQ+ +V+  +TPFYAE+GGQ+
Sbjct: 466 ------------------STETTIETIVLDKTVADYVGAGQEAKVILKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G      ++DVQK   G  +H  IV+ G L+    +   ++   R  +  NH+
Sbjct: 508 ADKGIIRGANGFAVVSDVQKAPNGQHLHTVIVKEGTLQVNDQVQAIVEETERSGIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS ++ + LRFD +H   +T  E + IE  VN+ I Q + 
Sbjct: 568 ATHLLHRALKDVLGEHVNQAGSLVSEERLRFDFSHFGQVTDEEKEKIERIVNEKIWQAIK 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VNISTKTLDEAKAIGAMALFGEKYGDIVRVVEV-----GDYSIELCGGCHVTNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+TG+ A   +  Q + LK  A+ +K     +V  RVE + ++ 
Sbjct: 683 KIVSESGIGAGVRRIEAVTGKEAFLFMAKQLDLLKETAATVKAKNVKDVPVRVEALQQQI 742

Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  +     +L N+E  S      KI  V  ++  IS  D   L+S++D L+++I S
Sbjct: 743 RELQRENESLNAKLGNMEAGSLVNEVQKIEGVPVLAKAISGADMDGLRSIVDKLKQEIPS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +I+L G + E K +++  VT+DL+++ ++A  L +  A    GGGGGGRP MAQ+GG  
Sbjct: 803 VVIVL-GTASEGKVNIVAGVTKDLINKGYHAGKLVKEVATRC-GGGGGGRPDMAQAGGKQ 860

Query: 882 GNKADQAIAGVASFLK 897
             K   A++ V  ++K
Sbjct: 861 PEKLQDALSFVYEYVK 876


>gi|228470921|ref|ZP_04055766.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228307318|gb|EEK16332.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 355/926 (38%), Positives = 511/926 (55%), Gaps = 84/926 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+ 
Sbjct: 1   MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI+ AW  LT+   L
Sbjct: 61  AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAIEFAWTFLTERLHL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+TV+          D+EA   W  +   + D+II  +  DNFW M +TGPCGPC
Sbjct: 121 PKDRLYVTVFGGSAEEGLSRDDEAAGYW--LQHTTEDRIIDGSRKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           SEI  D       Q  C   G    +++    IEIWNLVFMQ++++       LP   ID
Sbjct: 179 SEIHIDLRSEEERQEIC---GRDLVNKDHPLVIEIWNLVFMQYDRKADGHLEPLPHKVID 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSS 283
           TGMG ER+   +Q K +NYD DLF  LI+A E ++G +Y  N  V+   RV+ DH+R+ +
Sbjct: 236 TGMGFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIA 295

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++ 
Sbjct: 296 FAIADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGGAYPEIVA 355

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401
            + LI   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ 
Sbjct: 356 QRELIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLT 415

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           + IL  RG+  +D ++F++ ++EQ+SRAR  +           W  L E+   + F+GY+
Sbjct: 416 ELILSERGMT-LDQVAFDKLMQEQKSRARQAAA-----VDAADWEVLDEETSESTFVGYE 469

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L+    +   RKV  +K                                +VV  +TPFY
Sbjct: 470 TLQIETHILRYRKVADKK----------------------------HSYYQVVLAETPFY 501

Query: 522 AEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AE GGQ+GD G  I  DG    I D  K+   + VH  I+       +  L+  +  + R
Sbjct: 502 AEMGGQVGDKGVLIAQDGTEYPILDT-KRENNLTVH--ILSTLPADPKQPLIARVGAELR 558

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN
Sbjct: 559 HLTEANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVN 618

Query: 641 DIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             I  + P   R  +R   IA     GA AL G KY D VRV  ++Y D    S  LCGG
Sbjct: 619 AEIRADRP---RDEHRNVPIAQAKEMGAMALFGEKYGDEVRV--IKYGD----SVELCGG 669

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+STG+I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+     L      +
Sbjct: 670 THVASTGQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL 729

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKS 811
                 I E   + + I    K Q   E ++   +AD        +  +   + S   K 
Sbjct: 730 KALDRLIAESAEQRKAIEQYTKAQ--AEQIALQALADQTKRGETTIVTVNKSMSSDVAKD 787

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
           V   +++++Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++  GGGGG
Sbjct: 788 VAGTIRERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNAGKLIKEVASLI-KGGGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +PH A +GG N      AI  + S +
Sbjct: 847 QPHFATAGGRNPEGLQAAIDHIVSLI 872


>gi|303238701|ref|ZP_07325234.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593820|gb|EFL63535.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 879

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 332/903 (36%), Positives = 536/903 (59%), Gaps = 58/903 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS  L+P NDP+L+  NSGM P K  FTG+E+P  + V T
Sbjct: 6   LNELRERYLKFFEGKGHLRLPSFPLVPQNDPSLLLINSGMAPLKPYFTGKEEPPRRRVAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T++  +   
Sbjct: 66  CQKCIRTP----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEDLKMPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF++W K  GL  ++I+R+   DNFW    TGPCGPCSEI++D+G   
Sbjct: 122 KLWVTIYEDDDEAFEIWNKDVGLPPERIVRMGKKDNFWEHG-TGPCGPCSEIYYDRGVER 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +R+IE WN VF QF +  +     LP  +IDTGMGLER+A + Q+  
Sbjct: 181 GCGKPDCKVGCECDRFIEFWNNVFTQFNKDEEGNYTKLPNPNIDTGMGLERLACISQDVE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  +++++   +   +KY  ++   ++ RVI DH+RS++ +++DG++P+NEGRGY
Sbjct: 241 NLFEVDTVRNVLEYVCKTADVKYHESDKTDISIRVITDHIRSTTMMVSDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +P +  +   +  E   AYPEL + +  I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGINKPFLYDISMIVINESREAYPELEEKREYIQKVIRIEEEKFD 360

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+GL++L+  +  +     E + G +A++L+ T+G P+D+ ++I    GLA ID   
Sbjct: 361 LTIDQGLIILNKYIEETKAKNAETITGTMAYELHSTYGFPIDLTREISEENGLA-IDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   + E R   R   L   S       +S  +K   +QF+GY                 
Sbjct: 420 FKAKMLEHRIIGREDYLSKQSSAWSDDIYSSLDKNLKSQFVGYS---------------- 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   N   + V  I++  E+V+ A  G+ V V+ D+TPFYA +GGQ+GD G   G+
Sbjct: 464 -------ENVAEAKVLYIIKNDEVVQTAKEGESVTVILDKTPFYAASGGQVGDEGYIEGN 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            +R++I D +K  +G ++H  +VE+G L T   +  +ID + R  ++ NH+ THLL  AL
Sbjct: 517 DVRIRIEDCKKTDDGKYLHTGVVEKGTLETGADVKASIDIRRRTSIARNHTTTHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS + PD LRFD  H   +TS E+  +E  VN+ I ++L V  + M  +
Sbjct: 577 RNVLGTHVHQAGSLVEPDRLRFDFAHFSAMTSEEIAKVESEVNEKILESLIVDVKEMPID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV +       +S   CGGTH+ ST +   + I+SES + 
Sbjct: 637 EAKKLGATALFGEKYGNIVRVVKI-----ADYSMEFCGGTHLKSTSQAGFVKILSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ A ++L  +++ +  ++S LK S  + V R+E +      ++L  A++
Sbjct: 692 AGVRRIEALTGEAALAYLHEREKLINEVSSALKSSPQDSVKRIEAM-----AIELKSAQK 746

Query: 778 KLQLNVEDLSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +++     L    + +V            +     ++D + L++  D ++ K+ SG+++L
Sbjct: 747 EIEQLRSKLVSGSLDEVFSNAVEVKGVKVVKARFDQLDMEALRNTGDTIRNKMGSGVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G   E K S +++ T+D++ +  ++ ++ +  AK+  GGGGGGRP MAQ+GG + +K D
Sbjct: 807 -GSGYEGKVSFVVMATKDVVAKGIHSGNIIKEVAKI-AGGGGGGRPDMAQAGGKDLSKID 864

Query: 887 QAI 889
           +AI
Sbjct: 865 EAI 867


>gi|238924198|ref|YP_002937714.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|238875873|gb|ACR75580.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 886

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/913 (38%), Positives = 511/913 (55%), Gaps = 58/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 7   VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ 
Sbjct: 67  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177
           RLY ++Y ED+EAF +W K  G+  D+I R   +      DNFW     GPCGPCSEI++
Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGPCSEIYY 181

Query: 178 DQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+GE    G P      + +R++E+WN VF QF          L   +IDTGMGLER+A 
Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           V+Q+  + +DID  K +     +++G KY  + +  V+ R+I DH+RSS+FLI+DG++P+
Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I + L  
Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL  +G  
Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEILEEKGFT 421

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             D   F   +E QR +AR A       G    ++  +  +   T+F GYD L  +    
Sbjct: 422 -YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEI-TTEFTGYDKLTDT---- 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +    ++VE    G K  V+   TPFYA  GGQ GD
Sbjct: 476 -------------------AEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     + D  K     + H   V  G++RT     L++D + R     NHSAT
Sbjct: 517 KGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I + + V 
Sbjct: 577 HLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVR 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I    I
Sbjct: 637 TDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKAFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  E + L
Sbjct: 692 LSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLIAEMKAL 751

Query: 771 QLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q  +   K +   + L     ++ DVN    ++  +  VD   L+ + D+L++K+  G+I
Sbjct: 752 QSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L   S E K +++ + T+  +    +A +L + +++KV   GGGGGRP+MAQ+GG N  
Sbjct: 812 VLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVG--GGGGGRPNMAQAGGKNPA 868

Query: 884 KADQAIAGVASFL 896
               AIA V   L
Sbjct: 869 GIPDAIASVKDAL 881


>gi|289810694|ref|ZP_06541323.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 603

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 304/637 (47%), Positives = 409/637 (64%), Gaps = 44/637 (6%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGG 72
           +F    GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGG
Sbjct: 1   DFSYSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGG 60

Query: 73  KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVY 130
           KHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY
Sbjct: 61  KHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVY 120

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECI 183
           + D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I
Sbjct: 121 ETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHI 180

Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +
Sbjct: 181 WGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP+NE RGYVLR
Sbjct: 241 NYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLPSNENRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L++E+E+F +TL
Sbjct: 299 RIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTL 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+
Sbjct: 359 ERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAM 416

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RAR  S G G+     I         A++F GYD L                   
Sbjct: 417 EEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------------------ 452

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    
Sbjct: 453 -----LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFA 507

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG
Sbjct: 508 VDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           +HV+Q GS ++   LRFD +H++ +  +E++ +ED V
Sbjct: 567 THVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLV 603


>gi|319901112|ref|YP_004160840.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319416143|gb|ADV43254.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 872

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/920 (38%), Positives = 516/920 (56%), Gaps = 82/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHVDSRTEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQYNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIADMAGTTYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG +YPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYRLLPVLIENMGGSYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LLD  ++     GK E+ +G  AF LYDT G PLD+ +
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEV-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   D+  FN  +E+Q+SRAR ++  + +G     W +LKE  G T+F+GYD 
Sbjct: 418 LILRENGMTA-DLNEFNAEMEQQKSRAR-NAAAIETGD----WITLKE--GTTEFVGYD- 468

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                F + +  +L                + I Q+ + +         ++V D+TPFYA
Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLDKTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GDTG  + +   + + D  KK   + +H  I ++     E  ++  +D   R  
Sbjct: 502 ESGGQVGDTGVLVSEFETIDVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKRAA 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ IE   N  
Sbjct: 559 CAANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEELRQIEHIANAK 618

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCGGT 697
           I  N+P+   R M  EDA   GA AL G KY D VRV+    SVE+          CGGT
Sbjct: 619 IRANIPLKEYRDMPIEDAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CGGT 668

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV++TG I ++ IVSESS+ AG+RRIEA TG R    +    + L+ L +    +  ++ 
Sbjct: 669 HVAATGNIGMVKIVSESSVAAGVRRIEAYTGARVEEMMDTIQDTLRDLKALFN-NAPDLA 727

Query: 758 GRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVM 813
           G + +  EE    K Q+    ++ +  ++D   + I +VN +  I   + + ++ +K++ 
Sbjct: 728 GTIHKYIEENAGLKKQVEDFMKEKESQLKDKLMNSIQEVNGVKVIKFCAPLPAETVKNIA 787

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRP 872
             L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  GGGGG+P
Sbjct: 788 FQLRGQITEDLFFVAGTEYEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGGGQP 846

Query: 873 HMAQSGGPNGNKADQAIAGV 892
           H A +GG N +  + A+  V
Sbjct: 847 HFATAGGKNVDGLNAAVDKV 866


>gi|193214313|ref|YP_001995512.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|193087790|gb|ACF13065.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 887

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/913 (39%), Positives = 516/913 (56%), Gaps = 73/913 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF    HE++ S+ +IP +DPTL+FTN+GM  FK++F G     Y      QK
Sbjct: 6   IRQAFLDFFTSKQHEIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGIGSRPYTRAADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L + RLY
Sbjct: 66  CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELLTDVWKLPKDRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TVY +D+EAF+LWK  + ++A  I R    DNFW M ETGPCGPCSEI  D      G 
Sbjct: 126 ATVYKDDDEAFELWKSETDIAASHIQRHGEKDNFWEMGETGPCGPCSEIHIDLTPDKSGA 185

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
              ++   E  IEIWNLVF+Q+ +    +   LP   +DTGMG ER+A VLQ KT+NYD 
Sbjct: 186 ALVNAGRPE-VIEIWNLVFIQYNRDAAGKLHPLPAKHVDTGMGFERIAAVLQGKTSNYDS 244

Query: 247 DLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           D+F  +++    +TG  Y    E +  +  RV+ DH+R+ +F IADG  P+NEGRGYVLR
Sbjct: 245 DVFTPILKKIGDITGKTYGGSMESDTDMAMRVLADHIRTLAFAIADGGTPSNEGRGYVLR 304

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RR + YAR LG  EP +  L   LC  MG  +PEL++ + +IE+ +++E+E F +TL
Sbjct: 305 RILRRGVRYARQLGQNEPTLYKLTEVLCETMGDVFPELVERRQVIEQVIKAEEESFLQTL 364

Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           DRG+ + +GV   L K   ++++G  AFKLYDT+G PLD+ + +    GL+ +D   F  
Sbjct: 365 DRGIEIFNGVTEKLKKSGGKVIDGADAFKLYDTYGFPLDLTRLMAEEIGLS-VDEDGFLA 423

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++EQ+ RAR       +   E   +++  +   T+F GY+ L                 
Sbjct: 424 NMKEQKDRARKDRKEKSAVAEESGEWTIFAETLKTEFSGYETLE---------------- 467

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                           Q+  I     +G+K+ +V ++TPFYAE+GGQ GD+G    D   
Sbjct: 468 ----------------QKSRIARAKKAGEKLLLVLEKTPFYAESGGQQGDSGEIETDAFS 511

Query: 541 LQITDVQKKAEGIFVHHAI-------------VERGILRTEMSLV--LTIDYQNRRQLSI 585
             I+D QK  EG  V H +             +E   L    SL     ++ + R   + 
Sbjct: 512 FHISDTQK--EGDLVLHIVDKITDKESGDAVAIENFDLEKLSSLEADAKVNAETRGATAR 569

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG HV Q GS + P+ LRFD +H + ++   +  IE  VN  I  
Sbjct: 570 NHTATHLLHEALREVLGEHVQQKGSLVGPERLRFDFSHFERVSEEAMAQIEQIVNAQIRM 629

Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
              V     +  EDA   GA A  G KY D VRVV V       +S   CGGTH+ + GE
Sbjct: 630 AKAVKKHADVPFEDAKKMGALAFFGDKYGDFVRVVEVPG-----YSVEFCGGTHLDNIGE 684

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I LL IVSESSI +GIRR+EA+TG+ A         KL++L   L   S+  V+ RV++I
Sbjct: 685 IGLLKIVSESSIASGIRRVEAVTGKVAEDLFRSDRRKLQALRDTLSAQSEDAVLERVQKI 744

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE ++L+    K +L+L    L     +   +  V  ++  +    + ELK + +  + 
Sbjct: 745 LEEKKELEKEVEKLRLELAASALDGLVKNAETLNGVKILAAEVKVSGADELKQLGEMARS 804

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQ 876
           K+ SG+++L G +  +KAS++  V++D++ + + +   +L  +V  +  GGGGGRP++A 
Sbjct: 805 KLGSGVLLL-GAALGEKASLVAAVSDDVI-KSHKLQAGKLVGEVAKVVKGGGGGRPNLAT 862

Query: 877 SGGPNGNKADQAI 889
           +GG +  K  +AI
Sbjct: 863 AGGKDPQKLSEAI 875


>gi|55981800|ref|YP_145097.1| alanyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|62296736|sp|P74941|SYA_THET8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55773213|dbj|BAD71654.1| alanyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 882

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 346/854 (40%), Positives = 503/854 (58%), Gaps = 59/854 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G  KP+     
Sbjct: 2   RTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W     +    GP GPC
Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226
           SEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463
            RG  G+D   F +A+EEQ+SR+RA ++       +K    L+E Y   GAT+F+GY+ L
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRA-AMAFEREIFKKGAQVLEELYAERGATEFLGYNAL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + + +VL       L  G  S++           EA  G +V+VV D+TPFYAE
Sbjct: 475 ------EAEAEVLA------LLAGDQSLL-----------EAGPGTEVQVVLDKTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR  
Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDT 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I
Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWI 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702
             + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  T
Sbjct: 631 MADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRT 690

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761
           GEI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E 
Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEK 750

Query: 762 ---EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDA 815
              E+ E+ R+++ + A R +Q  +       + +   +   ++E   +D+K L+   D 
Sbjct: 751 LLAELKEKEREVESLKA-RLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADD 809

Query: 816 LQKKIQSGIIMLVG 829
           L  +     ++L G
Sbjct: 810 LVARGADVALVLSG 823


>gi|259046499|ref|ZP_05736900.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036664|gb|EEW37919.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 914

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 356/918 (38%), Positives = 509/918 (55%), Gaps = 68/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+   K  F G E P    +T  
Sbjct: 41  SEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEVPRITNA 100

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHT FEM+GNFS G YFKE  I  AW+ LT E    LD 
Sbjct: 101 QKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEKWLGLDP 156

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY+T Y +D E   LW    GL  D II +   DNFW +   GPCGP +EIF+D+GE 
Sbjct: 157 DRLYVTYYPKDPETKALWMDKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIFYDRGEK 213

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF QF          LP  ++DTGMGLER+ +
Sbjct: 214 YNNLAEDDPENYPGG--ENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLERVVS 271

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+  E ++ G KY  +    V+ +VI DH+R+ SF I DG LP
Sbjct: 272 VIQDTPTNFETDLFMPIIKQLESLSAGKKYNDSKELDVSFKVIADHIRAVSFAIGDGALP 331

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGY++RR++RR++ + + LG     +  L+P +   M S YPE+ +    I++ + 
Sbjct: 332 SNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVAQIMHSYYPEVTENMEFIQKVIA 391

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ RF +T+  GL +L+ + + +    +  L+G+ AFKLYDT+G P ++  +     G 
Sbjct: 392 NEENRFQETIHDGLSILETIFADMKASNETTLSGENAFKLYDTYGFPYELTLEYASDNGF 451

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   ++ Q+ RARA      S   +     L++    ++F+GY          
Sbjct: 452 T-VDEEGFQAEMQAQKDRARAARNTETSMNVQSA--VLRDITVESEFVGY---------- 498

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         +     ++KAIV   E+VE A      ++VFD+TPFYAE GGQL D
Sbjct: 499 -------------ASTTEEGVLKAIVVDDELVESAHKDAHAQLVFDRTPFYAEMGGQLAD 545

Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G  I D    +   +  V+K   G  +H   V  G L+   +  L +D   R ++  NH
Sbjct: 546 HGT-IQDANGTVVANVLQVKKAPNGQPLHTVEV-IGDLQVNAAYTLVVDASERAKIIKNH 603

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H +Q GS +TP GLRFD +H   +TS EL  +E  VN+ I   L
Sbjct: 604 TATHLLHQALKDVLGTHANQAGSLVTPTGLRFDFSHFGQVTSEELAEMERIVNEKIWAGL 663

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            VVT     EDA + GA AL G KY + VR+V++     G  S  LCGG HV++T EI L
Sbjct: 664 EVVTVETTLEDAKSRGAMALFGEKYGNLVRMVNI-----GDWSIELCGGIHVANTQEIGL 718

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L   +  LK +A  +K  Q   VV RV  + +E
Sbjct: 719 FKIVSESGIGAGVRRIEAVTSKEAFDLLSHHENLLKQVAGEVKAIQLDTVVERVATLGQE 778

Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821
            ++     AK K ++   +++   + + +VN  S I   +++K   EL+ + D  ++K  
Sbjct: 779 LKEANGEIAKLKAKIMKSEVADVFNNVEEVNGTSFITVALENKEMDELRQLADTWRQKGA 838

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S  I +VG +   KA++L+ V++D   R   A D+ +  A  +  GGGGGRP MAQ+GG 
Sbjct: 839 SD-IFVVGTASADKANLLVAVSKDANARGLKAGDIIKAIAPAI-QGGGGGRPDMAQAGGK 896

Query: 881 NGNKADQAIAGVASFLKK 898
           N     QA   +  +L K
Sbjct: 897 NPAGIPQAFELLKEYLAK 914


>gi|304385238|ref|ZP_07367583.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304328445|gb|EFL95666.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 881

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/920 (38%), Positives = 523/920 (56%), Gaps = 76/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRLTSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT +  FD+D 
Sbjct: 67  QKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFDMDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +DEEA K+W + +G+    I+     DNFW + E GP GP SEIF+D+GE 
Sbjct: 123 EKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDRGEE 178

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ER++EIWN+VF QF  +       LP  +IDTGMGLER+ +
Sbjct: 179 FNNLADDDPENYPGG--ENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V Q+   N++ DLF  +I   E+++G KY  + N+ V  +VI DH R+ +F I DG +P+
Sbjct: 237 VFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVPFKVIADHARAITFAIGDGAIPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ + + L   +P +  ++P +   M   YPE++  K  IE+ ++S
Sbjct: 297 NEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++RF +TL  GL LL+ +++    D  ++++G  AF+L+DT+G PL++ ++    +G+ 
Sbjct: 357 EEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGME 416

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            ID   F   +++Q+ RAR A S     G    +   LK     ++++GYD L+      
Sbjct: 417 -IDEAGFADEMQKQKERARSARSNAKSMGVQSDLLTDLKT---PSEYVGYDTLK------ 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                      +D     ++++K I+Q  ++ +    G+   V+FD TPFYAE GGQ+ D
Sbjct: 467 -----------VD-----AAVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509

Query: 531 TGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G     DG +  ++ DVQ    G  +H    +R +   E S  L +D     ++  NH+
Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGE-SFTLIVDRAFHLKVEKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + P  LRFD TH   +T  +L+ +E+ +ND I   +P
Sbjct: 569 ATHLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIP 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E     GA AL   KY  +VRVVSV     G +S   CGGTHV +T EI L 
Sbjct: 629 VTTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T Q A   L G++  L+  A  LK +Q  +V  +VE++  + 
Sbjct: 684 KIVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQV 743

Query: 768 RKL-QLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK---ELKSVMDALQKK 819
           + L Q I+   +L+  +       I D    +N    I +EV      +L+ + D  + K
Sbjct: 744 KDLNQTIN---QLEAKIAQAEVANIYDQVQEINGFRLITAEVQVSGMDQLRQMADDWKTK 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQS 877
            QS +++L G    +KA+++  V +  +     A DL + ++ KV   GGGGGRP+MAQ+
Sbjct: 801 DQSDVLVL-GAKIGEKANLIAAVKDPFVKEGLKAGDLIKAIAPKV--NGGGGGRPNMAQA 857

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG    K ++A+   + +L+
Sbjct: 858 GGSAPEKINEALKAASEWLE 877


>gi|323173022|gb|EFZ58653.1| alanyl-tRNA synthetase [Escherichia coli LT-68]
          Length = 714

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 325/741 (43%), Positives = 453/741 (61%), Gaps = 54/741 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT E  F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N  +  RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQ 817
           ++SE   V+ K L++++D L+
Sbjct: 682 LVSELSGVEPKMLRTMVDDLK 702


>gi|56963357|ref|YP_175088.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|59798485|sp|Q5WHM8|SYA_BACSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56909600|dbj|BAD64127.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 876

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 358/915 (39%), Positives = 522/915 (57%), Gaps = 70/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +S+R  F++FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   ASVRQMFIDFFKEKGHSVEPSASLVPFEDPSLLWINSGVATLKKYFDGRVIPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE+AI+ AW+ LT  K     Q
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEQAIEWAWEFLTDKKWIGFPQ 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            RL +TV+ EDEEA++ W +  GL  ++IIR+    NFW + E GP GP SEIF+D+G  
Sbjct: 123 ERLSVTVHPEDEEAYRYWHQHIGLPEERIIRL--EGNFWDIGE-GPSGPNSEIFYDRGPE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 180 YGDDPNDPELYPGG------ENERYLEIWNLVFSQFNHNADGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           M +V+Q+   N++ DLF  +I+A+E +    Y+  +    +VI DH+R+ +F + DG LP
Sbjct: 234 MVSVIQDTPTNFETDLFMPIIEATEALASTTYKEADTA-FKVIADHIRTVAFAVGDGALP 292

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ +A+ +G   P M  L+P +   M   YPE+   +  I   +R
Sbjct: 293 SNEGRGYVLRRLLRRAVRFAKSIGIDRPFMYELVPVVGAIMKDFYPEVADKQDFIARVIR 352

Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +TL+ GL +L  ++  +     E + G+ AF+LYDT+G P+D+ ++ +   GL
Sbjct: 353 TEEERFHETLNEGLAILSDIIEKAKATNKETIAGEDAFRLYDTYGFPIDLTEEYVHDEGL 412

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+Q +E+QR RARA      S + ++  F   E    + F+GY+         
Sbjct: 413 T-VDRAGFDQEMEQQRQRARAARQESASMSVQEDVFG--EVKTPSVFVGYEHTE------ 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              +++  +V+  E VE+AV G  ++   D+TPFYAE+GGQ+ D
Sbjct: 464 -----------------TDAVITTLVRGKEKVEQAVQGDVIQFFLDETPFYAESGGQVAD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G  + D  +  + DV+K   G  +H A V  G + T       I+ + R  +  NH+AT
Sbjct: 507 RGMIVTDTGQAVVKDVKKAPNGQHLHTAEVTIGEISTGQQASARIEVRERLDIVKNHTAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +H   +T  EL+ IE+ VN+ + Q LPV 
Sbjct: 567 HLLHQALKDVLGEHVNQAGSLVSSERLRFDFSHFGQVTPNELQQIEEIVNEKVWQALPVD 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             I   E+A A+GA AL G KY   VRVV V     G +S  LCGG HV +T EI L  I
Sbjct: 627 ISIQRLEEAKAAGAMALFGEKYGSEVRVVRV-----GDYSLELCGGCHVRNTAEIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRK 769
            SES I AG+RRIEA+T + A   L  Q   LK  A  LK  +  +V  R+E + EE RK
Sbjct: 682 TSESGIGAGVRRIEAVTSKGAYQFLSEQTAILKDAAERLKAKRLSDVPQRIESLQEELRK 741

Query: 770 LQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            Q  +     +L      N+ D    +I  V  ++  +   D++ L+S++D L++  +  
Sbjct: 742 AQRENESLTAKLGQAEAGNLND-QVKEIGGVAVIAAQVDAKDTEALRSMVDTLKQAHEKA 800

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L   +  K A V  V    + + F+A  L + ++A+    GGGGGRP MAQ+GG + 
Sbjct: 801 VIVLAAKTGNKLAFVAGVTKPAIAEGFHAGKLIKEVAARTG--GGGGGRPDMAQAGGKDP 858

Query: 883 NKADQAIAGVASFLK 897
            K D+A+A V  ++K
Sbjct: 859 AKLDEALAYVHEYVK 873


>gi|62185445|ref|YP_220230.1| alanyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81312406|sp|Q5L512|SYA_CHLAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|62148512|emb|CAH64283.1| putative alanyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 875

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 333/895 (37%), Positives = 503/895 (56%), Gaps = 51/895 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +++R+ FL+F+    H ++ SS + P NDP+++FTN+GM  FK+IF  +E   Y   TT 
Sbjct: 4   NTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+ D  R
Sbjct: 64  QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFDPDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           +Y TV+++D+EAF LW++   L +++I R+T  DNFWSMAETGPCG CSE+ FD+GE   
Sbjct: 124 IYATVHEKDDEAFALWEQ--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGESFG 181

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ +++      
Sbjct: 182 TATSPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGTNTV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ D+ + LI  +E ++G KY  +  +    RVI DH+RS SF I DG++P N  RGYVL
Sbjct: 242 FEADVLRLLISKTETLSGEKYHADEPLGAAFRVIADHVRSLSFAIVDGLIPGNTERGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R+I+RR++ Y + LG+T+P +  ++PAL   MG AYPEL  +   I+E +  E+E + K+
Sbjct: 302 RKILRRSVNYGKRLGFTQPFLAEIVPALVDAMGEAYPELRLSVSQIQEVMTIEEENYFKS 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  VL        ++G+ AFKL DT+GLPLD +  +L       +D+ +F Q 
Sbjct: 362 LHRGGNLLQQVLKSSSSSSTISGEDAFKLKDTYGLPLDEIA-LLAKDYNFSVDLDTFYQL 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
            +E + R+R + +      T+ ++ +L     +T F+GY  L    F             
Sbjct: 421 EKEAKERSRKNVIK-SHNATDTVYDALSLGENST-FVGYHDLSCDTF------------- 465

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538
                     ++AI++ GE V      +K  ++  +TPFYAE GGQ+GD+G   C+ G  
Sbjct: 466 ----------IEAIIKNGEQVSYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSDGTF 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           I   ++       G+ +HH  V +G L +  ++   +    R+ +S NH+  HLLH AL 
Sbjct: 516 I---VSHTTSPKAGMVIHHGEVSQGQLHSAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR     D
Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAAYSD 632

Query: 659 AIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            + S       G KY+D VRVVS  +      S  LCGGTH   TG++    I+ E ++ 
Sbjct: 633 VMNSKEIKQFFGDKYSDVVRVVSAGF------SHELCGGTHADFTGDLGYFRILKEHAVA 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIH-A 775
            GIRRIEA+TG+ A       ++ L  +A  L+  +  ++ +++ I +E + + +LI   
Sbjct: 687 TGIRRIEAVTGKEAEVLARQDNQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746

Query: 776 KRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + KL  ++ D     C +I DV++  + + E +S  L+   + L +KI   ++ L    K
Sbjct: 747 ENKLIYSLLDKVIDRCQQIEDVSYFIYHLPESESHRLQQYANCLHQKIPVRLVSLWTTQK 806

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             K  +   +++DL+ +   A DL ++      GG  GG+   AQ    +  +AD
Sbjct: 807 NGKYIIFSRISDDLVKQGLKAKDLLQVLLTPC-GGRWGGKDIFAQGSADSLPQAD 860


>gi|261418428|ref|YP_003252110.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767612|ref|YP_004133113.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374885|gb|ACX77628.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112478|gb|ADU94970.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 878

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 358/915 (39%), Positives = 525/915 (57%), Gaps = 68/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F I DG LP+NE
Sbjct: 239 QDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARVIRTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL--- 410
           ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ ++     G+   
Sbjct: 359 ERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEAGMTVD 418

Query: 411 -AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
            AG +     Q    + +R    S+ +  G        L +    ++F+GYD L  +   
Sbjct: 419 HAGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKDESRFVGYDELVAA--- 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V AIV+ G +VEE  +G++ +++ D TPFYAE+GGQ+ 
Sbjct: 469 --------------------STVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQIA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +     + DVQK   G  +H  IVE G ++        +D   R ++  NH+A
Sbjct: 509 DQGVFESETGTAVVKDVQKAPNGQHLHAIIVEYGTVKKGSRYTARVDEAKRMRIVKNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I ++LPV
Sbjct: 569 THLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLPV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
                  E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  
Sbjct: 629 DIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLFK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E ++
Sbjct: 684 IVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELKE 743

Query: 770 LQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
           L+  +   A R   +  E L+  ++ DVN +  + ++V   D  +L+++ D L++K+ + 
Sbjct: 744 LERENESLASRLAHMEAEHLT-RQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L   ++  K  ++  VT+DL+ + F+A  L +  A    GGGGGGRP +AQ+GG + 
Sbjct: 803 VIVLAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRC-GGGGGGRPDLAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
           +K  +A+  V +++K
Sbjct: 861 SKVGEALGYVETWVK 875


>gi|297624147|ref|YP_003705581.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165327|gb|ADI15038.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 917

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 339/876 (38%), Positives = 498/876 (56%), Gaps = 76/876 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           ++  ++R  FLEFF+  GH + PS+ L   +DP L+F  +GM  FK  F G         
Sbjct: 22  TSPDALRRKFLEFFRSKGHLIYPSAPL-KSDDPGLLFNVAGMQQFKPYFQGATPKFPGVE 80

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            V+  V T QKC+RAGGK +D++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT
Sbjct: 81  GVWPRVATSQKCMRAGGKDSDIENVGRTRRHHTFFEMLGNFSFGDYFKREAIGWAWEFLT 140

Query: 116 KE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGP 168
                 LD  RLY TVY +D+EA+ +WK   GL   ++ R    +NFW         +GP
Sbjct: 141 APEWLGLDPERLYATVYLDDDEAYNIWKDEVGLPEARLSRFGEGENFWPANAIKDERSGP 200

Query: 169 CGPCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           CGPCSEIF+D+G     P     ++  G+R++EIWNLVF QF  +N      LP+ +IDT
Sbjct: 201 CGPCSEIFYDRGPAYGSPDETGPNTGSGDRFVEIWNLVFTQFNLENGV-LTPLPQQNIDT 259

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           G GLER A V+ +  + Y  +LF+ +I+  E+++G+ Y     V+HR+I DH+RS S  I
Sbjct: 260 GAGLERFAAVIADVKDAYATELFQPIIRRLERLSGVPYRDLESVHHRIIADHVRSVSMCI 319

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADGILPAN+G GYV++ ++RRA   A LLG  EP++  L+  +   MG AYPE+  A+  
Sbjct: 320 ADGILPANDGAGYVIKMLLRRASRQAYLLGLREPVLHQLVSGVVEAMGEAYPEVKDAQAR 379

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  +R+E+E F +TL+ G+  + G+L  LG D  L GDVAF L+ T+G PLD+ +++  
Sbjct: 380 IEGIVRAEEESFLRTLESGIARVSGLLDELGGD-TLPGDVAFDLWQTYGFPLDLTEEMAQ 438

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG+  +D   +  A E  RS +RA + G G+  G T+ ++  L E +G T F+GY    
Sbjct: 439 ERGVR-VDREGYAHAREAARSLSRA-ARGEGALFGGTD-VFGQLAEAHGETAFVGYS--- 492

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V+A+VQ GE V EA  G  V+VV D TPFYAE 
Sbjct: 493 --------------------ARDAEAAVRALVQGGEAVSEAGEGTHVQVVLDTTPFYAEG 532

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVHHAIVERGILRTEMSLVLTI 575
           GGQ+GD G      +  +  D + KA          G+ VHHA V RG L+T   +   +
Sbjct: 533 GGQVGDAGV-----LEWRGGDHEGKALVTTTTKTKGGVVVHHARVLRGTLKTGQRVRAAV 587

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D  +R +   +H+ATHLLH AL ++LG+HV+Q GS + P+ LRFD +H +P++ +EL+ +
Sbjct: 588 D-PSRTETEKHHTATHLLHAALRSVLGTHVAQAGSLVAPERLRFDFSHPQPLSESELRRL 646

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSAL 693
           E  VN  I  +  V  R++  E+A A+GA  L G KY   VR+VSV  E +     S+ L
Sbjct: 647 EALVNRWIQADFTVSWRVVPLEEARAAGAMMLFGEKYGANVRMVSVTPERDPKSSVSTEL 706

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV+ TG + +  I  E ++ AG+RR+EA+ G+ A S+L      L + A  L V+ 
Sbjct: 707 CGGTHVARTGTLGVFVITGEEAVSAGVRRVEALVGEAALSYLADLRATLAAAAKSLGVTP 766

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISE---VDSK 807
           G +  R+E +  + +  Q   A+ + +L     +     ++++    S+ +++   +D+ 
Sbjct: 767 GELGPRLERLQSDLKAAQRTAAELRDRLAAAQTAGESGLEVSEAGGFSYAVAQLGGLDAS 826

Query: 808 ELKSVMDALQKK-------IQSGIIMLVGISKEKKA 836
            L+   D L  +       + SG +++V  S   +A
Sbjct: 827 ALRGAADRLLARSGADLVVVGSGPLLVVKASDAAQA 862


>gi|46199782|ref|YP_005449.1| alanyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|48428512|sp|P61707|SYA_THET2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46197409|gb|AAS81822.1| alanyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 882

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 346/854 (40%), Positives = 503/854 (58%), Gaps = 59/854 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G  KP+     
Sbjct: 2   RTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W     +    GP GPC
Sbjct: 117 LRLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226
           SEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463
            RG  G+D   F +A+EEQ+SR+RA ++       +K    L+E Y   GAT+F+GY+ L
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRA-AMAFEREIFKKGAQVLEELYAERGATEFLGYNAL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + + +VL       L  G  S++           EA  G +V+VV D+TPFYAE
Sbjct: 475 ------EAEAEVLA------LLAGDQSLL-----------EAGPGTEVQVVLDKTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR  
Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDT 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I
Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWI 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702
             + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  T
Sbjct: 631 MADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRT 690

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761
           GEI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E 
Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEK 750

Query: 762 ---EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDA 815
              E+ E+ R+++ + A R +Q  +       + +   +   ++E   +D+K L+   D 
Sbjct: 751 LLAELKEKEREVESLKA-RLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADD 809

Query: 816 LQKKIQSGIIMLVG 829
           L  +     ++L G
Sbjct: 810 LVARGADVALVLSG 823


>gi|197301771|ref|ZP_03166841.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC
           29176]
 gi|197299211|gb|EDY33741.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC
           29176]
          Length = 879

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 366/923 (39%), Positives = 525/923 (56%), Gaps = 87/923 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLVMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+ED+EAF +W K  G+ A++I R    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEEDDEAFDIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF          L + +IDTGMGLER+A ++Q+  
Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L     +++G +Y  +    V+ RV+ DH+RS +F+I+DGILP+N GRGY
Sbjct: 241 SMFDIDTMKALRDHVCRLSGKQYGTDHETDVSLRVVTDHVRSVTFMISDGILPSNSGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     ++ L   +       YPEL + K  I   +  E+  F 
Sbjct: 301 VLRRLLRRACRHGKLLGIEGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K  +++L+G+ AF+LYDT+G P+D+  +IL  +GL   D   
Sbjct: 361 KTIDQGLAILADMEAEMEKKGEKVLSGENAFRLYDTYGFPIDLTSEILEEKGLT-YDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEK--IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           F +A EEQR+++   + G  S T ++  ++  L  + G T+F+GYD L            
Sbjct: 420 FKKAQEEQRAKSEG-TFGTHSYTGKEVSVYDELDAEIG-TEFVGYDHLT----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V A+  + EIV+    G+K  ++ +QTPFYA  GGQ  D G   
Sbjct: 467 ------------FDSKVSALTTEDEIVDALSDGEKGTIIVEQTPFYATMGGQEADKG--- 511

Query: 536 GDGIRLQITDVQKKAEGIFV-------------HHAIVERGILRTEMSLVLTIDYQNRRQ 582
                     V + AEG FV             H   V +G+++   ++ L ++ +NR  
Sbjct: 512 ----------VIRTAEGEFVVEDCIHLAGTKVGHIGHVTKGMIKIGDTVTLEVNAKNRAL 561

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHLL  AL T+LGSHV Q GS +  D LRFD TH   +T  ELK +E+ VN+ 
Sbjct: 562 TERNHSATHLLQKALRTVLGSHVEQAGSFVNEDRLRFDFTHFSAVTPEELKKVEEIVNEQ 621

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I   L VVT+ +  E+A  +GA AL G KY D VRVV     D G  S   CGGTHV +T
Sbjct: 622 IQNALEVVTKNLPIEEARKTGAQALFGEKYGDVVRVV-----DMGGFSVEFCGGTHVKNT 676

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EIM L I+SES + AG+RRIEA+T      +    +  LK  A  +K S  N+  ++  
Sbjct: 677 SEIMALKIISESGVAAGVRRIEALTSDGLMKYYAEMEHLLKEAAQLIKASPENLAEKITH 736

Query: 763 IWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           +  E + L  ++   K K+      NV D    ++  V  ++  +  VD  EL+ + D  
Sbjct: 737 LQAENKALKGEVDSLKSKMAQEAAGNVLD-RVKEVKGVKLLAAQLDGVDMNELRELGDQF 795

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++K+  G+++L     E K S++  VT   + +  +A +L +  A ++ GGGGGGRP+MA
Sbjct: 796 KEKLGEGVVVLAS-GNEGKVSLMATVTNGAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMA 853

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N        AG+A  L+K
Sbjct: 854 QAGGKN-------PAGIAQALEK 869


>gi|307721802|ref|YP_003892942.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306979895|gb|ADN09930.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 850

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/908 (38%), Positives = 514/908 (56%), Gaps = 83/908 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF+   H  +PS+ L+P +D TL+F N+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IREEYLKFFESKQHTRVPSAPLVP-DDATLLFNNAGMVPFKSIFTGEVPRPANPRATSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   LD+ +L
Sbjct: 62  TCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFITEVLHLDKDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           ++TV++ D+EA  +WKK   ++A++I+R+   DNFWSM +TGPCGPCSEIF+DQG E   
Sbjct: 122 WVTVHESDDEAEAMWKK--HIAAERIMRLGDKDNFWSMGDTGPCGPCSEIFYDQGAEHFT 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKMSIDTGMGLERMATVLQEKTNN 243
           G       EG+R++EIWNLVFMQ+E + K  +R  L   SIDTGMGLER+  + +   +N
Sbjct: 180 GPEDYMGGEGDRFLEIWNLVFMQYEVKEKGGQRVPLAHPSIDTGMGLERVVAIKEGALSN 239

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y   LF  +I+  E + G +Y   +  ++RVI DH+R++ FL+A G+  +NEGRGYVLRR
Sbjct: 240 YGSSLFMPIIRKVEDMIGKEYIYASGASYRVIADHIRTTVFLLAQGVNFSNEGRGYVLRR 299

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ EP M  L+  L   MG  Y  L      ++E +  E+ RF KT++
Sbjct: 300 ILRRAVRHGYLLGFREPFMYKLVDTLVDIMGGEYEYLNTKANAVKEQIELEEARFFKTIE 359

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  +      +  +G+VAFKLYDT+G PLD+ +D+L  + L+ +D   F + + 
Sbjct: 360 SGIALFN--MEMQNTKDAFSGEVAFKLYDTYGFPLDLTEDMLKEKNLS-LDTAKFEELMS 416

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RA+A   G G       + +L E++G  +F+GY                      +
Sbjct: 417 EQRKRAKAAWKGSGDDAVSGDFKALLEEFGENEFVGY----------------------E 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
            T+  S ++  + +    VE  + GQK  V  D TPFYA++GGQ GD G  + +  ++  
Sbjct: 455 TTHHASKVLSLLDENFIRVEALIKGQKGWVFLDVTPFYAQSGGQCGDAG-ELKEHAKVLD 513

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ---NRRQLSINHSATHLLHHALSTI 600
           T   KK  G+ +    VE      E+ +   +D +   +R +++ +HSATHLLH  L  +
Sbjct: 514 T---KKFFGLNLSRIAVE-----NELKVGDAVDAEVDISRNEITKHHSATHLLHAVLFDV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H+SQ GS +  + LRFD +H K ++  EL+ IE+ VN  I + +P  T ++  E+A 
Sbjct: 566 LGEHISQAGSLVEANRLRFDFSHPKAVSEQELQEIEERVNVEIMRAIPAQTEVLPIEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA +  G KY D VRVVS  + D  V     CGG HV +T  I    I  ES + AG+
Sbjct: 626 KSGAKSQFGEKYGDEVRVVS--FADASVE---FCGGVHVENTANIGSFIITKESGVSAGV 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G  A  +   Q        + LK +QG V           + L L+    +L+
Sbjct: 681 RRIEAVCGNTAYKYFCEQ-------RALLKEAQGEV-----------KNLDLLAGIHRLK 722

Query: 781 LNVEDLSCH------------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            N+ +L               K   +N ++ ++ E+ S ++K  +D L+ +      ML 
Sbjct: 723 SNIAELKSELKEAQESAKVEIKTDAINGVTVVVDELPSGDIKEKIDELKNQNDKLCAMLF 782

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  +K   VLI       +   A D  +  A +L GGGGGGRP  AQ+GG + +K  +A
Sbjct: 783 QVKGDK---VLIAAGVKGCEA-KAGDWIKKIAPIL-GGGGGGRPDFAQAGGKDASKLPEA 837

Query: 889 IAGVASFL 896
                 F+
Sbjct: 838 KEEAMKFI 845


>gi|329938948|ref|ZP_08288322.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301833|gb|EGG45726.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 890

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/923 (38%), Positives = 523/923 (56%), Gaps = 80/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE A +LAW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAAKLAWELLTTPQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY+ED+EA ++W+ I G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEAEKLWITVYEEDDEAERIWRDIVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERF----ILPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+     +E F     LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEDFEILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I  + ++TG+ Y    ++ V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNLYEIDTSMAVIGKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE+  
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVETVIATMGQQYPELVTDRERIEKVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+ RF KTL+ G  +LD  ++        +L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEARFLKTLNAGTNVLDTAVTETKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +L   +G  +   +  + +  GAT FIGY        
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADALAKKTGHADLGAYREIADSAGATDFIGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S++V  I+  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 469 --------------TETEGESTVV-GILVDGLSSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG    D G  ++I D QK   G++VH  +V+ G +        +ID + R+ ++  H
Sbjct: 514 GDTGRIRTDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGARAQASIDDRRRKAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQKINEVLARDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A S L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVHQLTELVK-------GRPEELPEKV 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSV 812
                      ++++   A++ LQ      +  K  DV  ++ +  +V     + +L+ +
Sbjct: 742 AGMLARLKDAEKEIEKFRAEKVLQAAGGLAASAK--DVRGLALVTGQVPDGTSADDLRKL 799

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +  ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGG
Sbjct: 800 VLDVRGRIQGGRAAVVALFAVNNGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+P +AQ GG N     +A+  V
Sbjct: 859 GKPDVAQGGGQNPAAVGEAVDAV 881


>gi|312110118|ref|YP_003988434.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215219|gb|ADP73823.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 877

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/915 (39%), Positives = 526/915 (57%), Gaps = 68/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +  V
Sbjct: 7   AQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRICNV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     + 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEE 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    N++ DLF  +I+A+E+++G +Y  +    V  +VI DH+R+ +F I DG LP+NE
Sbjct: 239 QGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +A+ L    P M  L+P +   MG  YPE+ +    I++ +++E+
Sbjct: 299 GRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKVIKTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA- 411
           ERF +TL  GL +L  V+      G D +++G+  F+LYDT+G P+++ ++     G+  
Sbjct: 359 ERFHETLHEGLAILASVIEKEKERGSD-VISGEDVFRLYDTYGFPVELTEEYAQEEGMKV 417

Query: 412 ---GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              G +     Q    + +R    S+ +  G    I          ++F+GYD L     
Sbjct: 418 DHEGFEREMERQRERARAARQDVDSMQVQGGVLGDIKVE-------SRFVGYDELHAQ-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  IV+ G + +E   G++ +++ D TPFYAE+GGQ+
Sbjct: 469 ---------------------SKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +  R  + DVQK   G  +HH IVE+G L+   + +  ID   R  +  NH+
Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+ +A  LK S   +  R++ +  E R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742

Query: 769 KLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
           +LQ  +     +L N+E  S  +K+  VN +  + S+V   D   L++++D L++K+ S 
Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K S++  +T+DL+++ ++A  L +  A V  GGGGGGR  MAQ+GG + 
Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVA-VRCGGGGGGRADMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
            K  +A+  V +++K
Sbjct: 861 GKVGEALQYVETWIK 875


>gi|294792102|ref|ZP_06757250.1| alanine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457332|gb|EFG25694.1| alanine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 871

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 349/908 (38%), Positives = 512/908 (56%), Gaps = 59/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 KTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++EQR RAR                 +KE   A +    D+     F+K++  V 
Sbjct: 414 GFEAAMKEQRERAREA--------------RVKE---AAKVATPDI----TFLKDEELVE 452

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                 D     SS++  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G
Sbjct: 453 ------DEAETASSVL-MLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ 
Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I
Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++   +L  
Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEDRLHQVLAEAKETAKELEQ 740

Query: 775 AKRKLQ-LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830
            ++++      D+   K  I DV F++  +      EL+ + D  L K   SG++++   
Sbjct: 741 IRKEVSAAGAADIVAGKVVIGDVEFVAAAVKASSIDELRDLADLGLDKLNGSGVVLVGAA 800

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K  +A+
Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEAL 859

Query: 890 AGVASFLK 897
                 LK
Sbjct: 860 KAGGEALK 867


>gi|332176358|gb|AEE12048.1| alanyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 872

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 354/926 (38%), Positives = 509/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+ 
Sbjct: 1   MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI+ AW  LT+   L
Sbjct: 61  AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+TV+          D+EA   W + +  + D+II  +  DNFW M +TGPCGPC
Sbjct: 121 PKDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           SEI  D       Q  C   G    +++    IEIWNLVFMQ++++       LP   ID
Sbjct: 179 SEIHIDLRSEEERQAVC---GRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVID 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSS 283
           TGMG ER+   +Q K +NYD DLF  LI+A E ++G +Y  N  V+   RV+ DH+R+ +
Sbjct: 236 TGMGFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIA 295

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++ 
Sbjct: 296 FAIADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVA 355

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401
            + LI   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ 
Sbjct: 356 QRELIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLT 415

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           + IL  RG+  +D ++F++ ++EQ+SRAR  +           W  L E+   + F+GY+
Sbjct: 416 ELILSERGMT-LDQVAFDKLMQEQKSRARQAAA-----IDAADWEVLDEETTESTFVGYE 469

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L+    +   RKV  +K                                +VV  +TPFY
Sbjct: 470 TLQIETHILRYRKVADKK----------------------------RSYYQVVLAETPFY 501

Query: 522 AEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AE GGQ+GD G  I  DG    I D  K+   + VH  I+       +   +  +  + R
Sbjct: 502 AEMGGQIGDKGVLIAQDGTEYPIIDT-KRENNLPVH--ILSTLPANPKQPFIARVGDELR 558

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN
Sbjct: 559 HLTEANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVN 618

Query: 641 DIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             I  + P   R   R   IA     GA AL G KY D VRV  ++Y D    S  LCGG
Sbjct: 619 AEIRADRP---RDEQRNVPIAKAKEMGAMALFGEKYGDEVRV--IKYGD----SVELCGG 669

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+STG+I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+     L      +
Sbjct: 670 THVASTGQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL 729

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKS 811
                 I E   + + I    K Q   E ++   +AD        +  +   + S   K 
Sbjct: 730 KALDRLIAEGAEQRKAIEQYTKAQ--AEQIALQALADQTKRGETTIVTVNKPMSSDVAKD 787

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
           V   +++++Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++  GGGGG
Sbjct: 788 VAGTIRERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLI-KGGGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +PH A +GG N      AI  + S +
Sbjct: 847 QPHFATAGGRNPEGLQAAIDHIVSLI 872


>gi|256419492|ref|YP_003120145.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256034400|gb|ACU57944.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 871

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 345/926 (37%), Positives = 517/926 (55%), Gaps = 96/926 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF   GH ++PS+ ++  NDPTL+FTN+GM  FK+ F G   P ++ V   QK
Sbjct: 6   IRQQFLDFFASKGHHIMPSAPIVVKNDPTLLFTNAGMNQFKDYFLGNRAPAWKRVADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + L + RLY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIDWSWELLTEVYKLPKDRLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV+        ++D+EAF+ WKK   +  D+I+     DNFW M +TGPCGPCSEI  D
Sbjct: 126 VTVFEGDAKENLEKDQEAFEFWKK--HVPEDRILMGNKKDNFWEMGDTGPCGPCSEIHVD 183

Query: 179 QGECIP-------GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
              C P        G    + +  + IEIWN VFMQF +   +    LP   +DTGMG E
Sbjct: 184 ---CRPDSERALVDGKTLVNADDPQVIEIWNNVFMQFNRLKDRSLESLPAKHVDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIAD 288
           R+  V+Q KT+NYD D+F   I  +E++TG+KY   +    V  RVI DH+R+ SF IAD
Sbjct: 241 RLVRVIQGKTSNYDTDVFSGTIGHTEKLTGLKYGCTDSKPDVAFRVIADHIRAISFAIAD 300

Query: 289 GILPANEGRGYVLRRIMRRAM-CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G LP+N G GYV+RRI+RRA+  Y   L + +PL+  L+P L  +  + +PEL+Q    +
Sbjct: 301 GQLPSNTGAGYVIRRILRRAVRYYFSFLNWKKPLLQDLVPVLAQQFANVFPELLQQVDFV 360

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           ++ +  E+  F +TLD G+  ++  +    K++ ++G  AF+LYDT+G P D+   I   
Sbjct: 361 QKVVFEEENNFLRTLDSGIRRIEDFMG-AAKEKSVDGKTAFELYDTYGFPYDLTSLIASE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            G +  D   F+ A++EQ+ R+RA + L +G       W  L E    + F+GY+L    
Sbjct: 420 NGFSA-DKEGFDAAMKEQKDRSRAATELDMGD------WTVLNEN-AESVFVGYELSETE 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RK+                            +A   ++ ++V  QTPFYAE+GG
Sbjct: 472 TSVAKYRKI----------------------------KAKGKEQYQLVLSQTPFYAESGG 503

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GDTG        +Q+TD  KK   + VH   V++       +    I+  NR   ++N
Sbjct: 504 QVGDTGILTFGAETIQVTDT-KKENNLIVH--FVDKLPANITTTAKAVINKNNRLSTTMN 560

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG+HV+Q GS + P+ LRFD +H   ++  EL  IE+ VN+ I  N
Sbjct: 561 HSATHLLHAALRQVLGTHVAQKGSLVNPEYLRFDFSHFAKVSDEELAQIEEIVNEKIRAN 620

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVV + + +E+A+  GA AL G KY D VRVV +   D G +S  LCGGTHV STGE+ 
Sbjct: 621 IPVVIKELPKEEALKLGAMALFGEKYGDVVRVVVM---DPG-YSVELCGGTHVGSTGELG 676

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           +    SE ++ AG+RRIEA+TG+ A + +  Q ++LK + + LK +  ++V  V+     
Sbjct: 677 IFKFTSEGAVAAGVRRIEAVTGRNALAFVNAQLQQLKDIKTALK-NPKDIVAVVD----- 730

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD--------------VNFMSHIISEVDSKELKSV 812
                LI+ K  L+  VE L   K+                +NF+  I+   +++ LK +
Sbjct: 731 ----NLINDKAALEKRVEALELEKVRQLSAGLQAEVENVHGINFLGKIVDVNNAEALKQL 786

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGG 870
              L+ +I + + +L   +   KA+V ++++++L+      A  + +     +  GGGGG
Sbjct: 787 CFTLKTQIDNHVFILAA-NIGGKANVALMISDNLVAEKGLEAPKIIKEKIAPIIKGGGGG 845

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +   A +GG    + DQ I  V + L
Sbjct: 846 QKSFATAGGQEAGQLDQVITQVKAML 871


>gi|295399321|ref|ZP_06809303.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978787|gb|EFG54383.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 877

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 357/915 (39%), Positives = 525/915 (57%), Gaps = 68/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +  V
Sbjct: 7   AQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRICNV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     + 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEE 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM ++L
Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    N++ DLF  +I+A+E+++G +Y  +    V  +VI DH+R+ +F I DG LP+NE
Sbjct: 239 QGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +A+ L    P M  L+P +   MG  YPE+ +    I++ +++E+
Sbjct: 299 GRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKVIKTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA- 411
           ERF +TL  GL +L  V+      G D +++G+  F+LYDT+G P+++ ++     G+  
Sbjct: 359 ERFHETLHEGLAILASVIEKEKERGSD-VISGEDVFRLYDTYGFPVELTEEYAQEEGMKV 417

Query: 412 ---GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              G +     Q    + +R    S+ +  G    I          + F+GYD L     
Sbjct: 418 DHEGFEREMERQRERARAARQDVDSMQVQGGVLGDIKVE-------SHFVGYDELHAQ-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  IV+ G + +E   G++ +++ D TPFYAE+GGQ+
Sbjct: 469 ---------------------SKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +  R  + DVQK   G  +HH IVE+G L+   + +  ID   R  +  NH+
Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++P
Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TG+ A   +  Q   L+ +A  LK S   +  R++ +  E R
Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742

Query: 769 KLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823
           +LQ  +     +L N+E  S  +K+  VN +  + S+V   D   L++++D L++K+ S 
Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K S++  +T+DL+++ ++A  L +  A V  GGGGGGR  MAQ+GG + 
Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVA-VRCGGGGGGRADMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
            K  +A+  V +++K
Sbjct: 861 GKVGEALQYVETWIK 875


>gi|328554359|gb|AEB24851.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328912763|gb|AEB64359.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 878

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 350/910 (38%), Positives = 534/910 (58%), Gaps = 58/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEK 179

Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G  P  SE     E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V+
Sbjct: 180 Y-GNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANE 295
           Q    N+D DLF  +I+A+E+++G  Y  + + +   +VI DH+R+ +F ++DG LP+NE
Sbjct: 239 QNVPTNFDTDLFMPIIEAAERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGALPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ YA+ +G + P M  L+P +   M + YPE+ + +  I + +++E+
Sbjct: 299 GRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +TL+ GL +L  V+    ++   I++G   FKLYDT+G P+++ ++      +  +
Sbjct: 359 ERFHETLNEGLAILSDVIKKEKENGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMK-V 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +E+QR RAR     +GS   +    +L++    + F+GY         K + 
Sbjct: 418 DHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSA------TKAEA 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           KV+                  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+GD G 
Sbjct: 470 KVI-----------------ELLHDGQLISEAHEGDTVQILLDETPFYAESGGQIGDRGV 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+ATHLL
Sbjct: 513 LRSAQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHLL 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV   +
Sbjct: 573 HQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWASIPVAIDL 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
               +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IVSE
Sbjct: 633 KPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVSE 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E ++ Q  
Sbjct: 688 SGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKTNVKDVPKRIQSLQAELKEAQRE 747

Query: 774 HAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
           +     +L NVE  +   K+ D+  +  +  +V++K+   L++++D L+ K+ S +I+L 
Sbjct: 748 NESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIIL- 806

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G  +  K ++   VT+DL+++  +A  + + +A+V  GGGGGGRP MAQ+GG    K ++
Sbjct: 807 GAVQNDKVNLSAGVTKDLIEKGLHAGKMVKQAAEVC-GGGGGGRPDMAQAGGKQPEKLEE 865

Query: 888 AIAGVASFLK 897
           A+     ++K
Sbjct: 866 ALTSAEDWIK 875


>gi|224538063|ref|ZP_03678602.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520311|gb|EEF89416.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 872

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 349/927 (37%), Positives = 518/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVDVLKI 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRPEEEKAQIPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ+KT+NYD D+F+ +++A   +TG KY  +  + +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQDKTSNYDTDVFQPILKAIGNMTGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +LKE  G T+F+GY  
Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPAHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  EDA   GA AL G KY D VRV+    SVE+          CG
Sbjct: 617 AKIRANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-- 753
           GTHV++TG I ++ IVSESS+ AG+RRIEA TG R    +   ++ LK L +    +   
Sbjct: 667 GTHVAATGNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAPDL 726

Query: 754 -GNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            G +   +EE        E++ + +    K +L  N++++   K+        I + + +
Sbjct: 727 AGTIRKYIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVI------KICAPIPA 780

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865
           + +K++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  
Sbjct: 781 ESIKNIAFQLRGEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +  + AI  V
Sbjct: 840 GGGGGQPHFATAGGKNIDGLNAAIEKV 866


>gi|268680286|ref|YP_003304717.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618317|gb|ACZ12682.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 337/833 (40%), Positives = 493/833 (59%), Gaps = 55/833 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           +R  FL+FF++ GH+++ SS L+P +D TL+FTN+GMVPFK++FTG+  +P     TT Q
Sbjct: 3   VRAEFLKFFEQKGHKVIESSPLVP-DDATLLFTNAGMVPFKSVFTGEVPRPNPPRATTCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L + +L
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISHAWEFVTEVLKLPKEKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---C 182
           ++TV++ D+EA ++W  I  + A +I+R    DNFW M +TGPCGPCSEIF DQG     
Sbjct: 122 WVTVHESDDEAEEIW--IKHIDASRIMRFGDKDNFWQMGDTGPCGPCSEIFIDQGAENFN 179

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            P    G   +G+R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+  V +   +
Sbjct: 180 TPEDYMGG--DGDRFLEIWNLVFMQYERDKEGNLHPLPKPSIDTGMGLERVTAVQEGVFS 237

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYD  LF  L     ++ G  Y      ++RVI DH+RS +FL+A G+     GRGYVLR
Sbjct: 238 NYDSSLFIPLTSKVAELCGKAYAYKTGASYRVIADHIRSVAFLVAQGVSFGRVGRGYVLR 297

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +  LLG  EP M  LL  LC  MG  YP L+  K  + E +++E+E F  T+
Sbjct: 298 RILRRAVRHGYLLGLREPFMYKLLDTLCDLMGKQYPYLVAKKEGVAEQIKNEEESFFTTI 357

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
             GL L +  L +     + +G+VAFKLYDT+G PLD+  D+L  +GL+ ++   F   +
Sbjct: 358 ASGLELFEKELPN--TKAMFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VNEAEFEALM 414

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQ++R++A   G G   T   +  L EK+G   F+GY                 QK   
Sbjct: 415 AEQKARSKASWKGSGDKATHGEFKPLLEKFGLNTFVGY----------------TQK--- 455

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
           ++   V +++    ++ E ++E  +G    V+F++TPFYA +GGQ GD G   G G   +
Sbjct: 456 EVKTKVLALLDENFKEVESLDE--NGW---VMFEKTPFYAMSGGQCGDEGSIEGYG---K 507

Query: 543 ITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           + D +K  +   ++ ++VE    L     + L +D  +R ++  +HSATHLLH AL TIL
Sbjct: 508 VLDTKKFFD---LNLSLVELEKPLHVNDEVALVVDL-SRLEIEKHHSATHLLHSALRTIL 563

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +  + LRFD +H K ++  EL +IE  VN IIA  +   T++MN E+A  
Sbjct: 564 GDHVAQAGSLVEKERLRFDFSHPKALSHEELSNIEAFVNRIIASGVAGETKLMNIEEAKK 623

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY   VRVVS      G  S  LCGGTHV +   I   +I+ ES + AG+R
Sbjct: 624 SGAMALFGEKYGSEVRVVSF-----GDASIELCGGTHVENVANIGSFFILKESGVSAGVR 678

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEAI G  A ++      +++++   +K  +  ++G +  + EE + L+        Q 
Sbjct: 679 RIEAICGGAALAYAQALRTEMEAIKESVKHKE-PLIG-INRLKEEIKSLKTEVESLNAQA 736

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
                S H    VN +  I+  + + ++K+ +D L+ + +S  ++L+ + ++K
Sbjct: 737 GKAVESLH----VNGVELIVDVLGAGDIKARIDDLKNEKESVAVLLLQVKEDK 785


>gi|1565288|emb|CAA69650.1| alanyl-tRNA synthatase [Thermus thermophilus]
          Length = 882

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 345/854 (40%), Positives = 502/854 (58%), Gaps = 59/854 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G  KP+     
Sbjct: 2   RTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W     +    GP GPC
Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226
           SE F+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SETFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQAPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463
            RG  G+D   F +A+EEQ+SR+RA ++       +K    L+E Y   GAT+F+GY+ L
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRA-AMAFEREIFKKGAQVLEELYAERGATEFLGYNAL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + + +VL       L  G  S++           EA  G +V+VV D+TPFYAE
Sbjct: 475 ------EAEAEVLA------LLAGDQSLL-----------EAGPGTEVQVVLDKTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR  
Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDT 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I
Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWI 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702
             + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  T
Sbjct: 631 MADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRT 690

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761
           GEI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E 
Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEK 750

Query: 762 ---EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDA 815
              E+ E+ R+++ + A R +Q  +       + +   +   ++E   +D+K L+   D 
Sbjct: 751 LLAELKEKEREVESLKA-RLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADD 809

Query: 816 LQKKIQSGIIMLVG 829
           L  +     ++L G
Sbjct: 810 LVARGADVALVLSG 823


>gi|313887310|ref|ZP_07821001.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923229|gb|EFR34047.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 871

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 353/920 (38%), Positives = 508/920 (55%), Gaps = 84/920 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+     QK
Sbjct: 6   IRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRRAADSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI+ AW  LT+   L + RLY
Sbjct: 66  CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQLPKDRLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV+          D+EA   W + +  + D+II  +  DNFW M +TGPCGPCSEI  D
Sbjct: 126 VTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPCSEIHID 183

Query: 179 -------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
                  Q  C   G    +++    IEIWNLVFMQ++++       LP   IDTGMG E
Sbjct: 184 LRSEEERQAVC---GRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+   +Q K +NYD DLF  LI+A E ++G +Y  N  V+   RV+ DH+R+ +F IADG
Sbjct: 241 RLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++  + LI 
Sbjct: 301 QLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQRELIA 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCA 407
             ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ + IL  
Sbjct: 361 SVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELILSE 420

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           RG+  +D ++F++ ++EQ+SRAR  +           W  L E+   + F+GY+ L+   
Sbjct: 421 RGMT-LDQVAFDKLMQEQKSRARQAAA-----IDAADWEVLDEETTESTFVGYETLQIET 474

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            +   RKV  +K                                +VV  +TPFYAE GGQ
Sbjct: 475 HILRYRKVADKK----------------------------RSYYQVVLAETPFYAEMGGQ 506

Query: 528 LGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           +GD G  I  DG    I D  K+   + VH  I+       +   +  +  + R     N
Sbjct: 507 IGDKGVLIAQDGTEYPIIDT-KRENNLPVH--ILSTLPANPKQPFIARVGDELRHLTEAN 563

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN  I  +
Sbjct: 564 HTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIRAD 623

Query: 647 LPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            P   R   R   IA     GA AL G KY D VRV  ++Y D    S  LCGGTHV+ST
Sbjct: 624 RP---RDEQRNVPIAKAKEMGAMALFGEKYGDEVRV--IKYGD----SVELCGGTHVAST 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+     L      +      
Sbjct: 675 GQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPLKALDRL 734

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSVMDALQ 817
           I E   + + I    K Q   E ++   +AD        +  +   + S   K V   ++
Sbjct: 735 IAEGAEQRKAIEQYTKAQ--AEQIALQALADQTKHGETTIVTVNKPMSSDVAKDVAGTIR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +++Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++  GGGGG+PH A 
Sbjct: 793 ERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLI-KGGGGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N      AI  + S +
Sbjct: 852 AGGRNPEGLQAAIDHIVSLI 871


>gi|254993607|ref|ZP_05275797.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 826

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 347/876 (39%), Positives = 498/876 (56%), Gaps = 80/876 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY+
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                  T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 464 S----------------------TEQVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR
Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811
           ++  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+ 
Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
            +D  + K   GI++L G  +  K +++  V+E+ +
Sbjct: 791 FVDNWKDKKIGGILVL-GAVQGDKVNLISAVSEEAI 825


>gi|303229350|ref|ZP_07316140.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515886|gb|EFL57838.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 872

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 347/909 (38%), Positives = 507/909 (55%), Gaps = 59/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQHC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 KTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A++EQR RAR                 +KE               +K    D   L
Sbjct: 414 GFDAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
             +  ++     +S V  + +  E ++ AV G ++ V+   TPF+AE GGQLGDTG  +G
Sbjct: 446 KDEELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ 
Sbjct: 566 LKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SES I
Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEAITG+ A          ++ +A  LK     V  R+ ++  E ++   +L  
Sbjct: 681 GSGVRRIEAITGRAALDAAKHDRLTIERIAGELKTKPAQVEERLHQVLVEAKETAKELDQ 740

Query: 775 AKRKLQ-LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830
            ++++      D+   K  I DV F++  +      EL+   D  L K   SG++++   
Sbjct: 741 IRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGAA 800

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K   A+
Sbjct: 801 MGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMDAL 859

Query: 890 AGVASFLKK 898
                 +K+
Sbjct: 860 KAAGEAVKE 868


>gi|294501349|ref|YP_003565049.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351286|gb|ADE71615.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 877

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/915 (39%), Positives = 525/915 (57%), Gaps = 68/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT  K    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDKWIGFDA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TV+ ED+EAFK+W +  G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLSVTVHPEDKEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 180 YGNDLNDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I+A+E ++G KY  N+  +   +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I+  +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRVVKNE 357

Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+        + + G+  F+LYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDENMK- 416

Query: 413 IDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           ID   F + +E QR RAR     + S+ +  G        L E   A++F+GYD      
Sbjct: 417 IDHAGFEREMEAQRERARAARQDSSSMQVQGGV-------LGEVTVASEFVGYD------ 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                             N V ++V+AI+  GE+V+ A +G + +V+   TPFYAE+GGQ
Sbjct: 464 -----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G         ++ DVQK   G  V    V  G L        T+D +NR  +  NH
Sbjct: 507 IADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGEIYTATLDEENRSAIVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL   LG+HV+Q GS +T D LRFD +H   +T  EL+ IE  VN+ I  ++
Sbjct: 567 TATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSI 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L
Sbjct: 627 SVQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I AG RRIEA+TG+ A   +  Q   LK  A+ +K +  ++VGRVE + EE 
Sbjct: 682 FKIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEI 741

Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R LQ  +     +L N+E  +       I  VN ++  ++  D   L++++D L++K++S
Sbjct: 742 RNLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLES 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I+L     E K +++  VT+DL+ + +           + GGGGGGRP MAQ+GG + 
Sbjct: 802 AVIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGGGGRPDMAQAGGKDA 860

Query: 883 NKADQAIAGVASFLK 897
           ++ ++A+  V  ++K
Sbjct: 861 SQIEKALGTVEEWVK 875


>gi|229815209|ref|ZP_04445545.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM
           13280]
 gi|229809219|gb|EEP44985.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM
           13280]
          Length = 884

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 346/893 (38%), Positives = 517/893 (57%), Gaps = 48/893 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR+ +L FF++ G++L  SSSL+P +DP+L+  N+GM  FK  + G++        
Sbjct: 9   STAEIRSAYLNFFEERGNKLYASSSLVP-DDPSLLLANAGMNQFKEYYQGKKVMKEIGAC 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVR     ND+D +G   RH +FFEMLGNF+FGG  KE+A   A++L+T+ F L +
Sbjct: 68  SCQKCVRT----NDIDIIGSDGRHASFFEMLGNFAFGGVTKEQACTWAYELITEVFKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ TV+ +D+E   +W+ + G+  D I R+  +DNFW+   TGPCGPCSEI+FD GE 
Sbjct: 124 ERLHFTVFTDDDETHDVWRAL-GVPEDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGEE 182

Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G P  +   + +R++E WNLVF QF++Q       LP  ++DTGMGLERMA ++Q K
Sbjct: 183 VGCGCPDCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQHK 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEG 296
           ++ +D D+ + LI+  E+++G  Y  N         R+I DH RS  FLI+DG+LP NEG
Sbjct: 243 SSFFDGDVMQSLIKLGEEISGKTYVDNEYTGASRSLRIIADHARSVDFLISDGVLPGNEG 302

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + RLLG  +  +   + A+   MG AYP L++   L++  + +E+E
Sbjct: 303 RGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPNLVENAGLVKGIVNAEEE 362

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF  TL+ G V LD  L  LG+ E L+G  AF L+DT G P+D+  +I  + G A +DI 
Sbjct: 363 RFSTTLNNGRVYLDEQLGALGEGEQLSGKAAFMLHDTFGFPIDLTVEIAESAGHA-VDID 421

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+  + EQ++RARA + G   G+   +W  L ++  AT+F GY                
Sbjct: 422 GFDAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFAGY---------------- 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            ++  I+      + V AIV  GE V  A +  +  VV D+TP YAE GGQLGD G    
Sbjct: 466 -EEESIE-----GAHVLAIVVNGERVASAENAAEASVVLDRTPLYAEMGGQLGDHGLIDT 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +  +++   K  G++VH   +  G L    ++    D   R  L+ NH+ATHLL  A
Sbjct: 520 ADAQFFVSNTVSKG-GLYVHEGKL-IGKLSEGDTVFAGYDLNRRGLLARNHTATHLLDAA 577

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I    PVVTR+M  
Sbjct: 578 LKEVLGDHVNQAGSLVSPEALRFDFTHFEAMTSEQIRAVEDLVNEQILAAKPVVTRVMGI 637

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A ASGA AL G KY+D VRVVS+  ED    S  LCGGTH ++T E+ L  IVSESS 
Sbjct: 638 EEAKASGAVALFGEKYSDTVRVVSIGAED-EPFSRELCGGTHAANTAELGLFKIVSESST 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            + +RRIEA+T   A ++L  +    +S AS LK     V  R+  +  E R+      K
Sbjct: 697 GSNVRRIEAVTSTGAIAYLEQRAALAESAASQLKCRIEEVPARISSLQAELRESNQ-KLK 755

Query: 777 RKLQLNVEDLSCHKIADVNFMSH---IISE---VDSKELKSVMDALQKKIQSGIIMLVGI 830
           + L     D     I +   M     +++E   +++ +L++V D +++K+      ++  
Sbjct: 756 KALTGGGSDAISSAIENAQDMGGYKLVVAELAGLEASDLRNVWDTIRQKVSGACACVLAT 815

Query: 831 SKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             EK    LI    D      F+A ++ +  A ++  G GGG+P MAQ+GG +
Sbjct: 816 VTEKGTPALIAAATDDAASAGFHAGNVIKQIAPLV-DGRGGGKPTMAQAGGKD 867


>gi|10803041|gb|AAG23689.1|AF297520_1 alanyl-tRNA synthase [Haemophilus ducreyi]
          Length = 783

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 330/814 (40%), Positives = 484/814 (59%), Gaps = 56/814 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           M+GNFSFG YFK  AIQ AW+ LT E    L + +LY+TVY+ D+EA+ +W K  G+ ++
Sbjct: 1   MMGNFSFGDYFKHDAIQFAWEFLTSEKWLHLPKEKLYVTVYETDDEAYDIWHKTVGVPSE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201
            IIRI  N       DNFW+M +TGPCGPC+EIF+D GE   GGLPG++EE G+RYIE+W
Sbjct: 61  HIIRIGDNKGVPYASDNFWAMGDTGPCGPCTEIFYDHGESFWGGLPGTAEEDGDRYIEVW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLERM  V+Q   +NY+ D+F+ LI+  E  T 
Sbjct: 121 NIVFMQFNRQADGTLAKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIK--EVATL 178

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           +     +  + RVI DH+R+ S+LI DG++P+NEGRGYVLRRI+RRA+ +  LLG  E  
Sbjct: 179 LHVADLDNKSLRVIADHIRACSYLIVDGVIPSNEGRGYVLRRIIRRAVRHGNLLGAKEAF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+P L   MG A   L   +  I++TL++E+E+F +TL+RGL LL+  L+ + +++ 
Sbjct: 239 FYKLVPTLAKVMGQAGEILTDKQSYIQKTLKTEEEQFARTLERGLALLEEALTKV-ENQT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+VAFKLYDT+G PLD+  D+   R +  ID  SF   +  QR RA++ S   G+   
Sbjct: 298 LSGEVAFKLYDTYGFPLDLTADVCRERDIV-IDEASFEIEMTAQRERAKSSS-NFGAD-- 353

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + S+ +    T FIGYD          + KV+                 A+   G+ 
Sbjct: 354 ---YNSVIKVEAETAFIGYDCFNA------EAKVI-----------------ALFSNGQA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V++  SG+   VV D+TPFYAE GGQ+GD+G       +  + D QK  + +F H   V 
Sbjct: 388 VDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLITTAFCQFAVADTQKYGQ-VFGHIGQVV 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L     +   +D   R+ ++ NHSATHLLH AL  +LG HV Q GS ++ + LRFD 
Sbjct: 447 SGSLAIGDIISAQVDIARRQAITANHSATHLLHSALRQVLGEHVVQKGSLVSENVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           + S+ ++ A+L+ IE  VN  I QNL V    M+ E A   G  AL G KY D VRVV +
Sbjct: 507 SQSQAVSKAQLEEIERIVNRQIRQNLAVTIETMDIETAKEKGTVALFGEKYGDVVRVVGM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   S  LCGGTHV  TGEI L  ++SES++ AGIRR+EA+T + A + L  Q + 
Sbjct: 567 TD-----FSIELCGGTHVKHTGEIGLFKLISESAVAAGIRRVEALTAENAINWLHNQQKI 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           +   A  LK    ++V ++ ++ ++ ++   +L H K KL          ++  +N ++ 
Sbjct: 622 IHQSAELLKTDSLSLVDKIYQLQDKIKRNEKELQHFKDKLAAQAGAELAKQVVQINGINV 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +I +   ++SK L++++D L+ ++ S I++   +S + K ++++ VT+DL ++ NA +L 
Sbjct: 682 VIQKLEGIESKSLRTMVDDLKNQLSSVIVVFGSVSAD-KVNLIVGVTKDLSNKVNAGELV 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            L A+ + GG GGGRP MA +GG      D A+A
Sbjct: 741 GLIAQQV-GGKGGGRPDMAMAGGTEPQHLDTALA 773


>gi|89895167|ref|YP_518654.1| hypothetical protein DSY2421 [Desulfitobacterium hafniense Y51]
 gi|122482444|sp|Q24UT2|SYA_DESHY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89334615|dbj|BAE84210.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 875

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 355/913 (38%), Positives = 528/913 (57%), Gaps = 58/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R  FL FF   GH +LPS+SLIP +DPTL+ T +GMVPFK  F  + +P +  
Sbjct: 1   MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L
Sbjct: 61  ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ EDEEA  LW + +G+S ++I      +N W+    GPCG CSEI+ D G
Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIK--YDPENLWAAGPVGPCGYCSEIYVDLG 174

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +R++EIWNLVFMQ+ +        LPK +IDTGMGLER+A+V+Q
Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDEAGLLTPLPKQNIDTGMGLERIASVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    +++G+ Y  +  N V  +V+ DH R+ SF+++DGI P +EG
Sbjct: 235 GAASNFDTDLFLPIINKVAELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARLLG  +P +  +   +  +    YPEL + +  I   LR E++
Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQKDYSHHYPELKENENFILNHLRLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L +  + +L+G  AF LY+T+G P+++ +++L  +G++ +D
Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRGSKFMKEDR 473
           + +FN A EE R  A+  S  +     E    S K K  G T F+GY  L          
Sbjct: 414 METFNAAAEEHRRLAKEQSQQM-KAVQESAAISEKAKALGTTPFLGYHEL---------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V+A+ + GE V++A  G +V +   ++PFYAE+GGQ+ D+G 
Sbjct: 463 -------------AAHTKVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGV 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ +V+K   G   H  ++ +G+L T   +   +D   R   + +HSATHLL
Sbjct: 510 IRSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS +TPD LRFD TH   +TSAEL+ +ED +N+ +  N+PV    
Sbjct: 570 QAALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNEAVLANMPVAAEE 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A ASGA AL G KY D VRVVS+     G +S  LCGGTH+ +TG+I L+ I+SE
Sbjct: 630 MSLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIRATGDIGLVKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA+ G  A  ++   ++++   A  LK    +++ R++ +  + + L+  
Sbjct: 685 GGIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLE-- 742

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K   QLN       VE L      +  V  ++  +S  D   L++  D L+ K++ G+
Sbjct: 743 --KEVQQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L G + E K + + VVT   L   +A  + +  AK+  GGGGGGRP MAQ+GG +  K
Sbjct: 801 LVL-GAAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKIT-GGGGGGRPDMAQAGGKDAAK 858

Query: 885 ADQAIAGVASFLK 897
             +A+  V + +K
Sbjct: 859 LGEALDQVPAIIK 871


>gi|302561723|ref|ZP_07314065.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479341|gb|EFL42434.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 890

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 355/923 (38%), Positives = 520/923 (56%), Gaps = 80/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LDAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+     K +  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GAEGGPAVNDERYVEIWNLVFMQYERGEGTGKDDFEILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I  + ++TG++Y   +   V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYEIDTSMAVIARATELTGVQYGDAHASDVSLRVVTDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE+  
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIEKVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEENAFLKTLKAGTNILDTAITDTKSAGSAVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR +A+A +L   +G  +   +  + ++ GAT FIGY        
Sbjct: 418 LS-VDEDGFRRLMKEQREKAKADALSKKTGHADLGAYREIADRAGATDFIGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S++V  I+  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 469 --------------TATEGESTVV-GILVDGVSSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG    D G  ++I D QK   G++VH  +V+ G +        +ID + R  ++  H
Sbjct: 514 GDTGRIRADNGAVIEIRDCQKPVPGVYVHKGVVQVGEITVGARAHASIDGRRRTAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLSRDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVNQLTELLK-------GRSEELPEKV 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ         K  DV  ++ +  +V       +L+ +
Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGVAVVTGQVPDGTTPDDLRKL 799

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +  ++ +IQ G  ++V +        L V+  +   R     A DL R +AK L GGGGG
Sbjct: 800 VLDVRGRIQGGRAVVVALFTVNNGKPLTVIATNDAARERGLKAGDLVRTAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+P +AQ GG N     +A+  V
Sbjct: 859 GKPDVAQGGGQNPAAVGEAVDAV 881


>gi|282850479|ref|ZP_06259858.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579972|gb|EFB85376.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 871

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 346/908 (38%), Positives = 503/908 (55%), Gaps = 59/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 KTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKAAVIPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++EQR RAR                 +KE               +K    D   L
Sbjct: 414 GFEAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
             +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G
Sbjct: 446 KDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +++I + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 PMGKVEIHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ 
Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I
Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E +    +L  
Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLTEAKDTAKELEQ 740

Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830
            +++L              + DV F+   +      EL+ + D  L K   SG++++  I
Sbjct: 741 IRKELSAAGAADIIAGKVVVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGAI 800

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K  +A+
Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEAL 859

Query: 890 AGVASFLK 897
                 LK
Sbjct: 860 KAGGEALK 867


>gi|302525836|ref|ZP_07278178.1| alanyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302434731|gb|EFL06547.1| alanyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 887

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 344/915 (37%), Positives = 513/915 (56%), Gaps = 69/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   I   FL  F+  GH  +PS+ LI  +DP L+F N+GMV FK  F G+  P Y   T
Sbjct: 2   DTHEITDRFLRHFESRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKCVR      D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK      
Sbjct: 61  SVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIENAWELITKSQDDGG 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD  R++ TVY++D EA  LW+K++GL +D+I      DN+W M   GP GPCSEI++
Sbjct: 117 FGLDPDRIWATVYEKDSEAAGLWRKLTGLPSDRIQVRDGKDNYWDMGVPGPGGPCSEIYY 176

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLE 231
           D+G    G   G   + +RYIEIWNLVFMQ  + ++  +        LPK +IDTGMG+E
Sbjct: 177 DRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDQSPKLGHPPIGELPKKNIDTGMGVE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADG 289
           R+AT+LQ   N Y+ DL + +I  +E+ +G +Y  N+   V  RVI DH R+   LI DG
Sbjct: 236 RVATILQGVENVYETDLVRPVIGRAEEFSGRRYGANHADDVRFRVIADHARTGVLLIGDG 295

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P N+GRGYVLRR++RR +   RLLG  EP++      +   MG  YPELI     I E
Sbjct: 296 VTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVSQTMGPTYPELISGFDRISE 355

Query: 350 TLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +R E+E F  TL  G  + D     +  G  ++L GD AF+L+DT+G P+D+  ++   
Sbjct: 356 VVRVEEEAFLATLTSGSRIFDLAAAETKKGGGDVLAGDKAFQLHDTYGFPIDLTLEMAAE 415

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466
           +GL  +D   F   +EEQR RA+A +    SG  +   +  + E++G T+F+GY  L   
Sbjct: 416 QGLT-VDEAGFRTLMEEQRKRAKADAAARKSGHGDLSEYRKVLEQHGETEFLGYTEL--- 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
              + D KV+                  +++ G  V    +G+K E+V D+TPFYAE+GG
Sbjct: 472 ---QADAKVV-----------------GLLEDGLPVRSVAAGRKAELVLDRTPFYAESGG 511

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ DTG  +GDG+ L++ DVQK   G+FVH   V +G +  +  L  ++D   R  +  +
Sbjct: 512 QIADTGVLVGDGVELKVLDVQKIVPGLFVHRVEVTQGEVGIDTRLTGSVDANRRLSIERS 571

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H A+    G   +Q GS   P  +RFD T    +++  L  +E  VND +  +
Sbjct: 572 HSATHLVHAAVRGAYGKRAAQAGSLNAPGRMRFDFTTPGAVSTDILTEVEQEVNDYLQTD 631

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V +    ++ A+  GA AL G KY + VRVV     D G +S  LCGGTHV   G++ 
Sbjct: 632 VEVQSYTTTKDKALELGAVALFGEKYGNDVRVV-----DMGEYSRELCGGTHVGRIGQLG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-- 764
           L+ +VS++S+ +G+ R+EA+ G  A  H+  +   +  LA+  KV    + GR+E++   
Sbjct: 687 LVKLVSDASVGSGVHRVEALVGPDALKHVRKEQLLVSQLANTFKVPSDELPGRIEDVLSR 746

Query: 765 --------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
                   E+ R  Q++ +   L    +D+S      V+ ++ ++ +VD   L+++   +
Sbjct: 747 LKNAEKEIEQLRTQQVLGSAGALADKAQDVSG-----VSVVAEVVPDVDGNGLRALASDI 801

Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + ++  + G++ L   S EK A V+   +        A  L    A+ + GG GGG+P M
Sbjct: 802 RGRLGDRPGVVALFAPSGEKVAFVVATTSAARDKGIAAGKLVPSFAEAI-GGRGGGKPDM 860

Query: 875 AQSGGPNGNKADQAI 889
           AQ GG N   A+QA+
Sbjct: 861 AQGGGSNPAGAEQAV 875


>gi|218294683|ref|ZP_03495537.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218244591|gb|EED11115.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 881

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 331/786 (42%), Positives = 465/786 (59%), Gaps = 51/786 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             + IR  +L FF+  GH  LPS SLIP NDP+L+FT++GM P K  F G  KP+     
Sbjct: 2   RTAEIREKYLSFFESKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ +TT QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172
             LD  RL++TVY++D+EA+ +W+ + G+  ++I R   ++N+W     +    GP GPC
Sbjct: 117 LKLDPERLWVTVYEDDDEAYAIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226
           SEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +I+    ++G  Y G   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFYPIIERVALLSGRPYLGKESVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+  +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +    
Sbjct: 297 ADGVTFSNTGRGYVIRRLLRRALRHGYLLGLAEPFLHRLAPVVAELLGDFYPEMRENLQA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLRRLDALLSGLKPGEVLPGQEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463
            RG  G+D   F +A+EEQ+ R+RA ++       ++    L+E Y   GAT+F+GY  L
Sbjct: 417 ERGY-GVDTEGFKRAMEEQQERSRA-AMAFEREIFKRSAQVLEELYAERGATEFLGYGTL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     + V A++   E + EA  G +V+VV D+TPFYAE
Sbjct: 475 E-----------------------AEAQVLALLAGDESLPEAGPGTEVQVVLDRTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G     G R ++    K   GIF+H A VE G+L     +   +D   RR  
Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTLKTERGIFLHRARVEEGVLGVGERVRAVVD-PRRRDT 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ IE  VN  I
Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKGEELERIELLVNRWI 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702
             + PV  R +  E+A   GA AL G KY + VRVV VE     G+ S  LCGGTHV  T
Sbjct: 631 MADFPVTWRYLPLEEAKKEGAMALFGEKYGEVVRVVRVEGSPVPGLESKELCGGTHVRRT 690

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           GEI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E+
Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEGAIRFARGALSRLKALAERLEVGEAALEERLEK 750

Query: 763 IWEEYR 768
           +  E++
Sbjct: 751 LLAEFK 756


>gi|32266358|ref|NP_860390.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|41018183|sp|Q7VHV4|SYA_HELHP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|32262408|gb|AAP77456.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 892

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 356/922 (38%), Positives = 516/922 (55%), Gaps = 86/922 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF    H++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 6   IRKQYLDFFASKSHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPAPPRATSSQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+     +  L
Sbjct: 65  LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTQVLGFSKDVL 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           Y+T+++ D+EA++LW     +   +I R+   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 125 YVTIHESDDEAYELW--CEHIEPSRIKRMGDKDNFWQMGDSGPCGPCSEIYVDQGEKYFQ 182

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQFEQ+    R +LPK SIDTGMGLER+  + + K NN+
Sbjct: 183 SDEDYFGGEGDRFLEIWNLVFMQFEQKGGV-RTLLPKPSIDTGMGLERVIALKEGKINNF 241

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIV-------------------NHRVIVDHLRSSSFL 285
           D  LF  L+Q  +++T   Y G++ +                   + RVI DH RS +FL
Sbjct: 242 DTSLFAPLMQCLQKLTNKTYFGDDEIFDRLDLQEAEMIKIKNIQASFRVIADHARSVAFL 301

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +A G+    EGRGYVLRRI+RRA+ +  LLG  +P +  ++  +C  MG  Y  L + K 
Sbjct: 302 LAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLKKPFLWQVVEVVCESMGVHYSYLQERKR 361

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEIL-NGDVAFKLYDTHGLPL 398
            I+E  ++E+ERF +T++ G+ L    L  L       K EIL +G+VAFKLYDT+G PL
Sbjct: 362 AIKEQCKNEEERFFETIESGMTLFSTELEKLQSAVQTQKQEILFSGEVAFKLYDTYGFPL 421

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ QD+L  R +  +D+ +F Q + EQ+SR++A   G G    E  + +L  K+G  +F+
Sbjct: 422 DLTQDMLRERHIQ-VDMQAFEQCMNEQKSRSKASWKGSGDALKEGDFNALLSKFGENKFV 480

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQ 517
           GY          E  K  C+             +KA++  Q ++V+      +  V+ D+
Sbjct: 481 GY----------ESNKETCK-------------IKALLDSQFKMVDTLSPSSQGWVMLDK 517

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-------AIVERGILRTEMS 570
           TPFY E+GG +GD G        LQ    QK A+ +            I     L+    
Sbjct: 518 TPFYPESGGPVGDKGALYSTNRILQSAQAQKFAQVLDTQKFFGLNLSQIEALSALKVGQE 577

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D   R +++ +HSATHLLH AL TILGSH++Q GS + P  LRFD +H K +T+ 
Sbjct: 578 VFAEVD-SIRFEIAKHHSATHLLHLALRTILGSHIAQAGSLVQPHRLRFDFSHPKALTNE 636

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E+  IE+ VN+ I Q+   +   M+ + A A GA AL G KY +RVRVVS         S
Sbjct: 637 EITHIENLVNEQILQSNAQLCENMDMQQAKAKGAMALFGEKYGERVRVVSFG------DS 690

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGG HV++T EI   YIV ES + +G+RRIEA+ G  A  +  G++  L+   +   
Sbjct: 691 IELCGGIHVNNTAEIGSFYIVKESGVSSGVRRIEAVCGNAAYHY--GKNALLELSRARES 748

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           +   +V+  +E+I     K+QL  AK    K + +V+ L   +I  V  +   +  V + 
Sbjct: 749 LKAQDVLQGIEKI-----KMQLNEAKEKANKAKQSVKSLDYEEINGVRLIVLKLDSVSAN 803

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           E K ++D  + + +S  I+L+  S  K + V  V    L     A    +  A+ L GG 
Sbjct: 804 EAKEIIDRSKNENESVAILLLSESNNKISIVAGVKNAPL----KAGAWVKQVAQEL-GGN 858

Query: 868 GGGRPHMAQSGGPNGNKADQAI 889
           GGGR   A +GG + +K  QA+
Sbjct: 859 GGGRDDFATAGGKDIDKISQAL 880


>gi|257059315|ref|YP_003137203.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256589481|gb|ACV00368.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 879

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 347/898 (38%), Positives = 524/898 (58%), Gaps = 54/898 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P Y   TT 
Sbjct: 11  AQIRDKFLQFYASKHHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKNPDYPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  +W+L T+ F+L    
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPPEN 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V++ED+EAF++W+   G+   +I R+   DNFW    TGPCGPCSE+++D    + 
Sbjct: 126 IVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + ++ G+ Y+  +    V+ +VI DH+RS   +IADGI  +N  RGYVL
Sbjct: 245 ETDLIFPIIETAAKIAGINYKNTDKKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +         S YP + + +  I+  L+ E+ RF +T
Sbjct: 305 RRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFLET 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  +++   K+  ++G  AF LYDT+G PL++ Q+I   +GL  +D+  F  A
Sbjct: 365 LERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFEAA 423

Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++EQ+ R++A   ++ L   G+ +K    L E    T+F+GY                  
Sbjct: 424 MKEQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYS----------------- 462

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                 +  + + V+A++  G+ VE A +G +V+++ DQTPFY E+GGQ+GD G   GD 
Sbjct: 463 ------SPQIMAKVQAVLVDGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDN 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + ++I DV KK  GIFVH   VERGI+  E ++  TID   RR++  +H+ATHLL  AL 
Sbjct: 517 LVVRIEDV-KKESGIFVHFGRVERGIIAVENTVTATIDRACRRRVQAHHTATHLLQAALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++   +SQ GS +  D LRFD    + ITSAEL+ IE  +N  IA+       IM+ E 
Sbjct: 576 KVVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEK 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA A+ G KY+  VRV+ V     GV S  LCGGTHV +T EI L  I+SES I +
Sbjct: 636 AKAKGAIAMFGEKYSAEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAK 776
           G+RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q  L   K
Sbjct: 691 GVRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVK 750

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++L +   D    +   V     ++SE   +D K L++  + LQ+K+    ++L  +  E
Sbjct: 751 QELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSE 810

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
            K  VL+    D + +   +   +   ++  + GGGGGGRP++AQ+GG + NK  +A+
Sbjct: 811 DKV-VLVAAFSDKVHKEKQLMAGKFIGEIAKICGGGGGGRPNLAQAGGRDANKLPEAL 867


>gi|219669584|ref|YP_002460019.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219539844|gb|ACL21583.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 875

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 356/913 (38%), Positives = 527/913 (57%), Gaps = 58/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R  FL FF   GH +LPS+SLIP +DPTL+ T +GMVPFK  F  + +P +  
Sbjct: 1   MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L
Sbjct: 61  ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ EDEEA  LW + +G+S ++I      +N W+    GPCG CSEI+ D G
Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIK--YDPENLWAAGPVGPCGYCSEIYVDLG 174

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +R++EIWNLVFMQ+ +        LPK +IDTGMGLER+A+V+Q
Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDESGLLTPLPKQNIDTGMGLERIASVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    +++G+ Y  +  N V  +V+ DH R+ SF+++DGI P +EG
Sbjct: 235 GAASNFDTDLFLPIINKVSELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARLLG  +P +  +   +  +    YPEL + +  I   LR E++
Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQRDYSHHYPELKENENFILNHLRLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L +  + +L+G  AF LY+T+G P+++ +++L  +G++ +D
Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRGSKFMKEDR 473
           + +FN A EE R  A+  S  +     E    S K K  G T F+GY  L          
Sbjct: 414 METFNAAAEEHRRLAKEQSQQM-KAVQESAAISEKAKALGTTPFLGYHEL---------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V+A+ + GE V++A  G +V +   ++PFYAE+GGQ+ D+G 
Sbjct: 463 -------------AAHTRVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGL 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ +V+K   G   H  ++ +G+L T   +   +D   R   + +HSATHLL
Sbjct: 510 IRSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS +TPD LRFD TH   +TSAEL+ +ED +N  +  N+PV    
Sbjct: 570 QSALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNKAVLANMPVAAEE 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A ASGA AL G KY D VRVVS+     G +S  LCGGTH+ +TG+I L+ I+SE
Sbjct: 630 MSLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIHATGDIGLVKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+ G  A  ++   ++++   A  LK    +++ R++ +  + + L+  
Sbjct: 685 SGIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLE-- 742

Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             K   QLN       VE L      +  V  ++  +S  D   L++  D L+ K++ G+
Sbjct: 743 --KEVQQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L G + E K + + VVT   L   +A  + +  AK+  GGGGGGRP MAQ+GG +  K
Sbjct: 801 LVL-GAAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKIT-GGGGGGRPDMAQAGGKDAAK 858

Query: 885 ADQAIAGVASFLK 897
             +A+  V   +K
Sbjct: 859 LGEALDQVPGIIK 871


>gi|256371739|ref|YP_003109563.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008323|gb|ACU53890.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 854

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 322/791 (40%), Positives = 453/791 (57%), Gaps = 57/791 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F E+F + GH  +PS+SL+P +DPTL+FT +GMVPFK  F G+E P Y+  T
Sbjct: 2   DSNDLRRAFREYFVERGHVPVPSASLVP-HDPTLLFTVAGMVPFKPYFLGEEVPPYRRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++QKC+RAGGKHNDLD VG T RH TFFEMLGNFSFG YFKE AI  AW L+T+   LD 
Sbjct: 61  SIQKCMRAGGKHNDLDQVGTTARHLTFFEMLGNFSFGDYFKEGAIPYAWGLVTEVLGLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ITV+  D+EA ++W +  G+  ++I R+   DN+W M ETGPCGPCSEI++D+GE 
Sbjct: 121 DRLWITVHTSDDEAERIWIEACGVRPERIQRL-DEDNWWQMGETGPCGPCSEIYYDKGES 179

Query: 183 I-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GG P    + ER++EIWNLVFMQ+++        LP   IDTG GLER+  VLQ   
Sbjct: 180 YGAGGGPAVGSD-ERFLEIWNLVFMQYDRHPDGSLTPLPAPCIDTGAGLERIVPVLQGHD 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG------NNIVNHRVIVDHLRSSSFLIADGILPANE 295
           + ++ DL   L++ ++ +TG +Y G         V  R++ DH R+++FL+ADG++P NE
Sbjct: 239 SVFETDLMWPLMEEAQSLTGRRYGGRFGADAGGDVGLRIMADHARATTFLLADGVVPTNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RR +  A+LLG   P++  ++      MG AYPE+ +    I +    E+
Sbjct: 299 GRGYVLRRIIRRLVARAQLLGAKGPVVEPMVRMTAAVMGEAYPEVARELETIVQHAAREE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL  G  LLD  L    +   + G +AFKL+DT+GLP+++  ++   RG++ +D 
Sbjct: 359 ERFAATLALGRPLLDAAL----EGGSVPGALAFKLHDTYGLPIELTMELAAERGVS-VDR 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F +A+  QR RAR    GLG+   E  +   +  ++G ++F GY+             
Sbjct: 414 AGFEEAMAAQRERAR--QAGLGTEAVEHPVSAEVLREHGRSEFTGYE------------- 458

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                              A   +G ++  A  G  +  V D+TPFY E GGQLGDTG  
Sbjct: 459 -------------------ATEDEGRLLALASEGDVLVAVLDRTPFYPEGGGQLGDTGTI 499

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GDG RL I D  +   G+  HH     G       +   +D + R  L ++H+ATHLLH
Sbjct: 500 EGDGFRLTIIDTDQPVAGVIRHHVGAVEGEPVIGALVRAVVDAERREGLRVHHTATHLLH 559

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + PD LRFD TH  P+T  E++ IE  V   I ++  V   +M
Sbjct: 560 WALREVLGPHVKQQGSLVAPDHLRFDFTHWGPLTPDEIEEIERRVAAEIIRDSVVTVELM 619

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +R++AI  GA A  G +Y D VRVV       G  S  LCGGTH+   G I  L I SES
Sbjct: 620 DRDEAIRRGAVAFFGDRYGDVVRVVHA-----GESSVELCGGTHLDRLGRIGHLRITSES 674

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           SI A  RR+EA+  Q A   +  +D + L  L   +   +  +  RV+ I E  ++ +  
Sbjct: 675 SIGANTRRVEAVV-QLAALEVAHRDRRLLDELERIVPGGRDGIGERVDRIVERAKRAESE 733

Query: 774 HAKRKLQLNVE 784
            A+ + +   E
Sbjct: 734 LARERTRTLAE 744


>gi|330897295|gb|EGH28714.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 642

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 315/681 (46%), Positives = 414/681 (60%), Gaps = 50/681 (7%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           Y    T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E
Sbjct: 1   YTRAVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSE 60

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGP 168
              +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGP
Sbjct: 61  KWLNLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGP 120

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CGPCSEIFFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTG
Sbjct: 121 CGPCSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 180

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIA
Sbjct: 181 MGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIA 238

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  I
Sbjct: 239 DGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHI 298

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E  L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   
Sbjct: 299 ERVLKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARE 357

Query: 408 RGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           R L  +D   F + ++ QR RAR A S G+   +  K+         ATQF GY      
Sbjct: 358 RNLT-LDEAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------ 403

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                             T G +S+V A+ ++G+ V     G++  V+ D TPFYAE+GG
Sbjct: 404 ----------------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGG 446

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD+G       R  ++D  K   G F+HH +V  G L     +   +  + R    +N
Sbjct: 447 QIGDSGFLQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLN 505

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N
Sbjct: 506 HSATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKN 565

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V+T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I 
Sbjct: 566 TEVMTEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIA 621

Query: 707 LLYIVSESSIRAGIRRIEAIT 727
           L  IVSE  + AG+RRIEA+T
Sbjct: 622 LFKIVSEGGVAAGVRRIEAVT 642


>gi|167764982|ref|ZP_02437103.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC
           43183]
 gi|167697651|gb|EDS14230.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC
           43183]
          Length = 873

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 349/923 (37%), Positives = 514/923 (55%), Gaps = 87/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   +TG  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMTGATYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +L+E  G T+F+GY  
Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D+TPF
Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------FQIVLDKTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E   +  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPFMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756
           ++TG I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +    G +
Sbjct: 671 AATGNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDAFQDTMRDLKALFNNAPDLSGTI 730

Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        E++ K +    K KL  N+++++  K+  + F + +I    +  +K
Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEVNGTKV--IKFCAAMIP---ADTVK 785

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + A+  V
Sbjct: 845 GQPHFATAGGKNPDGLNAAVDKV 867


>gi|295695750|ref|YP_003588988.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411352|gb|ADG05844.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 878

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/907 (38%), Positives = 526/907 (57%), Gaps = 54/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEFF    H++ PS+SL+P +DP+L++ N+GM P K  F G++ P    + + 
Sbjct: 4   AEIRKKFLEFFASKDHDVYPSASLVPVDDPSLLWINAGMAPLKPFFDGRKVPPNPRIASS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVG+T RH TFFEMLGNFS G YFK+ AI  AW+ LT+   LD  R
Sbjct: 64  QKCIRT----NDIENVGKTARHQTFFEMLGNFSIGDYFKKEAIDWAWEFLTEHMGLDPER 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L +T++ ED+EA++LW +  G+ A +I R+   DNFW + E GP GPCSEIF+D+GE   
Sbjct: 120 LSVTIHPEDDEAYELWHRRIGVPAHRIFRM--EDNFWEIGE-GPSGPCSEIFYDRGENRG 176

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   E +R++EIWNLVF QF          LPK +IDTGMGLERMA+V+Q+  +
Sbjct: 177 CGRPECNVGCECDRFLEIWNLVFTQFNHNPDGTYTPLPKKNIDTGMGLERMASVMQDVDS 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DLF+ +I+A+ +  G++Y  E    V  +VI DH+R++ F + DG+LP NEGR Y+
Sbjct: 237 NFDTDLFRPIIEAAAEAAGVQYGQEKQWDVALKVIADHIRTAVFAVGDGVLPGNEGRSYI 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ Y R LG+  P +  L+P +   MG AYPE+++    I   +++E+ERF +
Sbjct: 297 IRRLLRRAVRYGRNLGFDRPFLYRLVPVVGEVMGEAYPEIVEKGDFIVRAVKAEEERFLE 356

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G  +L+  +  L       L G+ AF+LYDT G P+D+ ++I   +G+  +D   F
Sbjct: 357 TLAEGEQVLEDYIEKLRSAGRTTLAGEDAFRLYDTFGFPIDLTKEIASEQGI-DVDEEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            QALE QR RARA    + S  +++    L +    ++F+GY++L               
Sbjct: 416 AQALEAQRERARAARQDVESMQSKR--GVLVDLEAPSRFVGYEVLE-------------- 459

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V+ +V    +VE    G +  +V ++TPFYAE+GGQ+ D G      
Sbjct: 460 ---------TQSRVEVLVVDDRVVERVSEGDQCLIVLNETPFYAESGGQVADRGTIETAT 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            RL++ DVQK   G  VH   V RG +     +   +D + R  +  NH+ATHLLH AL 
Sbjct: 511 ARLEVEDVQKAPRGQHVHRCRVVRGTVTAGEVVRARVDRRYREDIIKNHTATHLLHKALR 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +    LRFD +H  P+   EL+++E  VN+ I +N PV  R M  ++
Sbjct: 571 EVLGEHVAQAGSLVADSRLRFDFSHYGPLAPEELEAVERVVNEEIWRNEPVDIREMPLDE 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY +RVRVV       G  S  LCGG HV  T EI +  IVSE+ I +
Sbjct: 631 AKAMGAMALFGEKYGERVRVVK-----AGDFSIELCGGCHVRRTSEIGVFKIVSETGIGS 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIH 774
           G+RRIEA+TG+ A + L  + + L   AS L+V+  +V  ++E++     E  R+L+   
Sbjct: 686 GVRRIEAVTGRHAYAFLDSRLKGLDRAASLLRVAPADVPDKLEQVLGDMKETERELESWR 745

Query: 775 AK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +  R   L + D     I  V  ++ ++      +++ ++D L + I SG+++L G  +
Sbjct: 746 DRWIRGQALRLAD-RVTDIQGVPVVAEVVEGATPDQMRRMVDVLWETIHSGVVVL-GSKQ 803

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K   +  V+ D + +  +A  L +       GGGGGG+P +AQ+GG +  K  +A++ 
Sbjct: 804 EDKVMFVAAVSPDWVAKGLHAGQLVK-EVAAAAGGGGGGKPDLAQAGGRHPEKLAEALSR 862

Query: 892 VASFLKK 898
           V  ++ +
Sbjct: 863 VPGWVMR 869


>gi|188586395|ref|YP_001917940.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205830160|sp|B2A5J7|SYA_NATTJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|179351082|gb|ACB85352.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 878

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 338/911 (37%), Positives = 524/911 (57%), Gaps = 64/911 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEFF+   H +  S S+IP NDP+++   +GM P K  FTG++ P    + T QK
Sbjct: 6   IRKKFLEFFETKDHYVRKSYSIIPENDPSILLIGAGMAPLKPYFTGEKTPPSPRMATSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR      D++ VG T RH TFFEMLGNFSFG YFK  AI   ++  T+   L   +L+
Sbjct: 66  CVRTP----DIEEVGITARHATFFEMLGNFSFGDYFKREAIFWGYEFCTEWLSLSPEKLW 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180
            +VY +D+EA+ +W    G+  ++I+R+   DNFW +  TGPCGPCSEI +D+G      
Sbjct: 122 ASVYLDDDEAYDIWHDEVGIPHERIVRLGKEDNFWEIG-TGPCGPCSEIHYDRGAEYGCD 180

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +C PG       + +RY+EIWNLVF QF +  +     L + +IDTG GLER+A +LQ
Sbjct: 181 SPDCKPGC------DCDRYLEIWNLVFTQFNRDEEGNYTTLKQKNIDTGAGLERLAVLLQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +  + Y+ID+ K ++    Q++G+ Y  + +  ++ R+I +HLRS +F++ DG+LPANEG
Sbjct: 235 DVPSIYEIDIIKPILDHVIQLSGVNYGEDNDKDISLRIITEHLRSVTFIVGDGVLPANEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA  + +LLG  +  M   +  +   M  AYPEL + +  I++ +  E++
Sbjct: 295 RGYVLRRILRRASRHGKLLGIKDTFMSDGVDLVIDIMKEAYPELEERREYIKKIVEIEED 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF KT+D+GL +L+  L ++ K     L G  AFKLYDT+G PL++ ++I+   G   +D
Sbjct: 355 RFNKTVDQGLGILNEFLENMNKQGKNTLEGSDAFKLYDTYGFPLELTREIVQENGYT-LD 413

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + L  QR +AR A     G  T        +++    +F GYD L          
Sbjct: 414 EQGFQEELNRQREQARKAQQESEGMLTESNAMKQFQDQ--KVEFTGYDNLEQE------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          S I+  I  + + +++E   G++V+++ + TPFY E+GGQ+GDTG
Sbjct: 465 ---------------SQIIGIIDHKNDDLLKEVQEGEEVQILINPTPFYGESGGQIGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D  R  + +         V    V  G LRT   +   +DYQ R+ +  NHSATH+
Sbjct: 510 EIFSDNGRAHVKNSSVNGYDQTVLQVKVTDGQLRTGDKVSGKVDYQRRKDIMKNHSATHM 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH+AL  ++G+HV Q GS + PD LRFD TH  P++  E+K IE  VN +I +N  V   
Sbjct: 570 LHYALKKVVGAHVEQAGSLVAPDRLRFDFTHFAPLSEDEIKQIELEVNKLIRENSRVRVI 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + E+A   GA AL   KY   VRV+ +        +  LCGGTH ++TGE+ L  I +
Sbjct: 630 NTDLEEAKELGAVALFEDKYEQEVRVIEIG------PAVELCGGTHATATGELGLFKIDN 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ++S+ AG+RR+EA+TGQ A  +L  + E+++ +A  LK  +  VV + +E  E+++    
Sbjct: 684 QTSVGAGVRRLEALTGQHALEYLDQKAEQIQDIAELLKTEENKVVEKTQEFLEDFKAKDK 743

Query: 773 IHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K Q+    V+DL      I+D   +++ +++ D+  L+ + + ++ K+ SG+++L
Sbjct: 744 EIEKLKNQIFTFKVDDLLAQSKDISDFKLVANQLNDFDADSLRDLSERVKNKLDSGVVVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G S   KA  + +VT+DL+++  +A ++ +  AK+  GGGGGGRP MAQ+GG   +K +
Sbjct: 804 -GSSTNNKALFVAMVTKDLVEKGVHAGNIVKEVAKIT-GGGGGGRPDMAQAGGKEPDKLN 861

Query: 887 QAIAGVASFLK 897
           +AI  V + ++
Sbjct: 862 EAIMKVETLVR 872


>gi|282882868|ref|ZP_06291473.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297279|gb|EFA89770.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 874

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 349/904 (38%), Positives = 523/904 (57%), Gaps = 70/904 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH++LPS SLIP ND +L+   +GM P K  FTG+  P  + VTT QK
Sbjct: 13  IRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPGKRVTTCQK 72

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R G    D+DNVG+T+RH TFFEMLGNFSFG YFK+  I  A++ LT   ++++  L+
Sbjct: 73  CIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNLEINKDDLW 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180
           +TVY +D+EAF +WK   G++ D+IIR+   DNFW + E GP GPC+EI+ D+G      
Sbjct: 129 VTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVDRGLKYGSI 187

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  PGG      EG+R+IE+WNLVF QF++  K     L   +IDTGMGLER+ATVLQ  
Sbjct: 188 DERPGG------EGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQGT 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID    +I   E+++G KY  +    V+ RVI DH+R+ +FL+ D + P+NEGRG
Sbjct: 242 NNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEGRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  L   +    G  Y EL++    I++ ++ E+E+F
Sbjct: 302 YVLRRLIRRAARHGRLLGIKTTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEEKF 361

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             T++ G+ +LD  +  L    ++IL+G+ +FKLYDT+G P D+ ++IL  +G   +D+ 
Sbjct: 362 QMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MDMD 420

Query: 417 SFNQALEEQRSRAR-AH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            FN  +++Q+ RAR AH   ++G  S T E ++   K      +F+GY+         ED
Sbjct: 421 GFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKFK-----NEFVGYE---------ED 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           +   CQ   I            I +    V+     +K  ++ D+TPFY E GGQ+GDTG
Sbjct: 467 K---CQANII-----------GIFKDYNEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GD  + ++ D +K  EG+ +H   V  G + T+      ID   R  +  NHS THL
Sbjct: 513 YIDGDDFKCRVIDTKKTREGLHLHIVEVLDGEV-TKSPCFAEIDVVRRNNIRRNHSVTHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG HV+Q GS +  D LRFD TH + ++  E+K +ED VN  I + L V T 
Sbjct: 572 LHKALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEDRVNQKIFEALSVTTT 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + N + A   GA  L   KY D VRV+S+     G +S  LCGGTHV +T EI +  I+S
Sbjct: 632 VTNPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES + +G+RRIE +TG      L         +A  LK ++ +++ ++     E +KL  
Sbjct: 687 ESGVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKLSSSLNEIKKLNK 746

Query: 772 ----LIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               L H+  K +L N+ D    K   +N+++H   + D   L+ + D ++ K+ S +++
Sbjct: 747 AIDSLKHSSDKDELSNILDEVKEKNG-INYLTHKFKDKDVNSLRDIADMVRNKLNS-VVV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L+    + K + +  +++DL+   ++A  + +  +KV  GGGGGGR  MA +GG +  K 
Sbjct: 805 LLATENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVC-GGGGGGRADMATAGGRDLGKV 863

Query: 886 DQAI 889
            +A+
Sbjct: 864 SEAL 867


>gi|160892619|ref|ZP_02073409.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50]
 gi|156865660|gb|EDO59091.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50]
          Length = 888

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/913 (39%), Positives = 529/913 (57%), Gaps = 59/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLKMNSFSLIPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWSWEFLTKVVGLDEN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y++D+EAF +W K  G++ +KI R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEDDDEAFDIWNKEIGIAPEKIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGHNNYTELVQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G+KY  +    V+ RVI DH+RS +F+ +DGILP+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVKYMEDEKTDVSIRVITDHIRSVTFMASDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   + +E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIEGRFLAELSKTVIEVSKDAYPELEEKKAHIFTCINTEEENFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+G +  L     ++LNG+ AFKLYDT+G PLD+ ++IL  +G+  +D   
Sbjct: 361 KTIDQGLSILNGFVEELNNSGKKVLNGENAFKLYDTYGFPLDLTKEILEEKGIE-VDTEG 419

Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           FN+A+++QR  AR     ++ +G  S   E I  +L  K     FIGYD +  S      
Sbjct: 420 FNKAMDKQRETARKSRKVSNYMGADSTIYEDIDTALTSK-----FIGYDKVEASS----- 469

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             ++         + V+S         E+V+    G    ++  +TPFYA  GGQ+GD G
Sbjct: 470 -NIIAITAEYKEGDQVTS---------ELVDVISEGTNGSIITAETPFYATMGGQIGDAG 519

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +  R  + D  K A     H   VE G L+   +  L++    R  +  NHSATHL
Sbjct: 520 VIETESGRFIVKDTIKVAGDKIAHLGYVESGELKNGSTAKLSVTADRRALICKNHSATHL 579

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS ++ D LRFD TH + +T  E+  +E  VN+ I ++L V T 
Sbjct: 580 LQKALKMVLGDHVEQAGSYVSEDRLRFDFTHFQAMTPEEIAKVEAIVNEQIDKDLKVKTE 639

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ EDA  +GA AL G KY ++VRVVS++       S   CGGTHV +TG I    I+S
Sbjct: 640 VMSIEDAKKTGAMALFGDKYGEKVRVVSMDD-----FSVEFCGGTHVPNTGVIGTFKIIS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEA+T   A ++    +++LK+ A   K     +  ++E +  E + L  
Sbjct: 695 EMGVAAGVRRIEALTSVGAFNYYKEMEDELKAAAKAAKAEPAKLAEKIETMLAEIKALTS 754

Query: 773 IHAKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            ++K K +L  ++ +   +AD      V  ++  + + D   L+++ D  + K+ + +I+
Sbjct: 755 ENSKLKDKL-AKNSAGDALADAIDINGVKVLATSVEDTDMNALRNLGDDFKNKLGTSVIV 813

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   +K+ K +++ + T+D + +  +A ++ + SA ++GGGGGG RP+MAQ+GG N    
Sbjct: 814 LAS-AKDGKVNLIAMATDDAVKKGAHAGNIIKASAALVGGGGGG-RPNMAQAGGKNP--- 868

Query: 886 DQAIAGVASFLKK 898
               AG+A  L K
Sbjct: 869 ----AGIADALAK 877


>gi|168186831|ref|ZP_02621466.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169295233|gb|EDS77366.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 879

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/909 (38%), Positives = 533/909 (58%), Gaps = 54/909 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEM+GNFSFG YFK   I  AW+  T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181
           +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D GE
Sbjct: 122 KLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                      + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q   
Sbjct: 181 IKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQGVE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +++D  K ++     +   +Y  + I  V+ R+I DH+RS S +I+D +LP+NEGRGY
Sbjct: 241 TIFEVDTIKSILDKVATLANTEYGKDEIKDVSLRIITDHVRSVSVMISDEVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     +  ++ ++    G AYPEL + K  I++ +  E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKEYIKKVISIEEERFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L   + +L ++  ++L+G+  FKLYDT+G PL++ ++IL  +G+  +D+  
Sbjct: 361 ETIDSGMEILKQYIENLEENNQKVLSGEKVFKLYDTYGFPLELTEEILEEKGII-VDMDG 419

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           FN+ ++EQR RARA  S     GT  KI  ++  +   T F GY+ L             
Sbjct: 420 FNKEMKEQRERARAARSESTYMGTDVKILDTIPSEI-ETVFDGYENLE------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      + S VK I++  + V+    G+K  +V ++TPFYAE GGQ+GD G    
Sbjct: 467 -----------LQSKVKIIIKDDDFVDCIKKGEKGIIVTERTPFYAEMGGQIGDRGTISA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG   ++ D +    G  VH   V  G ++ E  ++L +D + R  +  NHSATHLLH A
Sbjct: 516 DGFIAKVQDCKNNIGGKIVHFVEVIEGNIKLEDEVLLEVDRRRRENVGKNHSATHLLHAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++G HV Q+GS +  D LRFD TH + +T  ELK +ED VN+ I     VVT+ M+ 
Sbjct: 576 LRKVIGEHVHQSGSYVDEDKLRFDFTHFESLTDEELKEVEDLVNNTIENVYDVVTKEMSI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  SGA AL   KY DRVRVV +     G  S+ LCGGTH+S+ G+I L  IVSES I
Sbjct: 636 EEARNSGAMALFDEKYGDRVRVVKM-----GEFSTELCGGTHISNVGKIGLFKIVSESGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQL 772
            AG RRIEA+TG +A   +  + + L+ +++ LK S+ +++ R+     E+ ++ +++ +
Sbjct: 691 AAGTRRIEAVTGHKALEFIEHKSDLLRQISNMLKCSEKDIINRLNQQSAELKDKDKEISV 750

Query: 773 IHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +  K KL    ED    +  +I  VN     + +VD + L+++ D ++ KI+SG+++L G
Sbjct: 751 L--KSKLASGSEDDILKNVKEIKGVNLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-G 807

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              E K   + + ++D + R  +  ++ R  AK+  GGGGGGRP MAQ+GG    K + A
Sbjct: 808 SEVEGKVQFIAMASKDAVSRGVHCGNIVREIAKI-AGGGGGGRPDMAQAGGRLPEKLNDA 866

Query: 889 IAGVASFLK 897
           I  V + ++
Sbjct: 867 INEVENIME 875


>gi|238916897|ref|YP_002930414.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|238872257|gb|ACR71967.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 880

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 347/902 (38%), Positives = 521/902 (57%), Gaps = 49/902 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRLYLDFFESKGHLKMKSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTETVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +D+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYQDDDEAFNIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  + L     ++ G+KY+ +    V+ RVI DH+RS +F+++DGI+P+NEGRGY
Sbjct: 241 SIFDVDTLQALRNKVCEMAGVKYKEDEKQDVSIRVITDHIRSVTFMVSDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + +  I + +  E+++F 
Sbjct: 301 VLRRLLRRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELEEKRTFITKVISEEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+ + + L    + +L+G  AFKLYDT+G P+D+ ++IL  + +  ID   
Sbjct: 361 KTIDQGLSILNDMEAELASKGENVLSGADAFKLYDTYGFPMDLTKEILEEKNIT-IDEAG 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           FN A+EEQR +AR A  +    G    ++  +      + F+GYD               
Sbjct: 420 FNAAMEEQRVKARNARKVTNYMGADATVYDEIDPAI-TSAFVGYD--------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                  LTN   S +  +  + E+V+    G K  V+ D+T FYA  GGQ GD G    
Sbjct: 464 ------KLTN--ESEITVLTTEEEVVDALSEGDKGTVIVDETVFYATMGGQEGDKGVIKT 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 +    K   G   H   + +G+++   +  + +    R     NHSATHLL  A
Sbjct: 516 SEGEFAVETTIKLKGGKIGHVGTMTKGMMKVGDTATMEVSPAYRADTCKNHSATHLLQKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS + PD LRFD TH + +T  E+  +ED VN+ IA+ +PVVT +M  
Sbjct: 576 LRIVLGDHVEQKGSYVDPDRLRFDFTHFQSMTKEEIAKVEDIVNEKIAEAIPVVTDVMTI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  +GA AL G KY ++VRVV++     G  S   CGGTHV++T  I L  IVSE+ +
Sbjct: 636 EEAKKTGAMALFGEKYGEKVRVVAM-----GDFSKEFCGGTHVANTANIRLFKIVSEAGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+T +    +    ++ ++  A   K     +V ++  + +E + L   + K
Sbjct: 691 AAGVRRIEALTDKGVIKYYAELEKTIEEAAKAAKAEPVQLVKKIAAMNDEIKSLMSENEK 750

Query: 777 RKLQL--NVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  N    +   I +VN + +I ++VD     EL+++ D L+ +I SG++++V   
Sbjct: 751 LKAELANNALGDTAGDIKEVNGVKYIATKVDGVDMNELRNLGDKLKGEIGSGVVVIVSAQ 810

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K SV+ + T+D++ +  +A +L +  A ++ GGGGGGRP+MAQ+GG N    D+ IA
Sbjct: 811 GADKVSVIAMATDDVIAKGAHAGNLIKALAPIV-GGGGGGRPNMAQAGGKNPAGIDELIA 869

Query: 891 GV 892
            V
Sbjct: 870 KV 871


>gi|70726302|ref|YP_253216.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|83305859|sp|Q4L6W5|SYA_STAHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68447026|dbj|BAE04610.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 339/920 (36%), Positives = 509/920 (55%), Gaps = 77/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+ LT E    ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSENWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EA+++W    GL   +IIRI  N  FW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDSEAYRIWNDEIGLEESRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGDE 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGQDDPSEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  +I   E+V   KY  NN   +  +VI DH+R+ +F IADG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIINEVEKVADKKYLVNNEHDIAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  GL +L+ +L+     +  +NG  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLQEGLAILNNLLAKAKSSNNEINGSDAFKLYDTYGFPIELTEELASQEN 413

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           ++ +D+ +F + +++QR+RAR A           ++   LK     ++F+GY+       
Sbjct: 414 IS-VDMATFEKEMDQQRTRAREARQSSQSMQIQSEV---LKNITTESKFVGYE------- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    + +  ++  GE VE A  G+ V  +  +TPFYA +GGQ+
Sbjct: 463 ----------------TTDYQTTLTDLIYNGEKVESAEPGETVYFILKETPFYAVSGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +   +++T+V K   G  +H  +++ G +     +  +++   R+ +  NHS
Sbjct: 507 ADKGTVGNENFEIEVTEVTKAPNGQNLHQGVIQFGQVTINSDVDASVNRDERKDIQKNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + 
Sbjct: 567 ATHLLHAALKEVLGEHVNQAGSLVESERLRFDFSHFGPMTQDEIDQVERRVNEEIWRGIS 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 627 VNIQEMPINEAKQMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVDNTAEIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            I+SES   AG+RRIEA TG+ A  HL     K  S+   +KV   N V  ++ ++ EE 
Sbjct: 682 KIISESGTGAGVRRIEAFTGKSAFLHLEDIQNKFNSIKDQVKVKSDNQVFDKIVQLQEEE 741

Query: 768 RKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818
           + L     +R  ++      N+ED    +I ++N    + +EV+   +KE++  MD  + 
Sbjct: 742 KNLHKQLEQRNKEITSLKMGNIED----QIEEINGFKVLATEVEVSNAKEIRQTMDDFKS 797

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K Q  II+L     E K S++  V ++  D+  A D+ +  A ++ GG GGGRP MAQ G
Sbjct: 798 KQQDAIIILASDLGE-KVSLIATVPKEQTDKIKAGDIIKNMAPLV-GGKGGGRPDMAQGG 855

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G       +A+  +  ++KK
Sbjct: 856 GTQPENISEALRFIKDYIKK 875


>gi|56421091|ref|YP_148409.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81557818|sp|Q5KWU5|SYA_GEOKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56380933|dbj|BAD76841.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 887

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/924 (38%), Positives = 527/924 (57%), Gaps = 77/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    +  V
Sbjct: 7   AQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRICIV 66

Query: 65  ---------QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT
Sbjct: 67  PENPRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLT 122

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             K    D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +
Sbjct: 123 SDKWIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNT 179

Query: 174 EIFFDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           EIF+D+GE   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGM
Sbjct: 180 EIFYDRGEAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLERM ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F I
Sbjct: 239 GLERMCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    
Sbjct: 299 GDGALPSNEGRGYVLRRLLRRAVRYAKHIGIDRPFMYELVPVVGEIMHDYYPEVKEKADF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   +R+E+ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ ++ 
Sbjct: 359 IARVIRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEY 418

Query: 405 LCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
               G+    AG +     Q    + +R    S+ +  G        L +    ++F+GY
Sbjct: 419 AAEAGMTVDHAGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKDESRFVGY 471

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L  +                       S V AIV+ G +VEE  +G++ +++ D TPF
Sbjct: 472 DELVAA-----------------------STVIAIVKDGRLVEEVKAGEEAQIIVDVTPF 508

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+ D G    +     + DVQK   G  +H  IVERG ++        +D   R
Sbjct: 509 YAESGGQIADQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKR 568

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            ++  NH+ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN
Sbjct: 569 MRIVKNHTATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVN 628

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + I ++LPV       E+A A GA AL G KY D VRVV V     G +S  LCGG HV 
Sbjct: 629 EQIWKSLPVDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVP 683

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  I L  IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R+
Sbjct: 684 NTSAIGLFKIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARL 743

Query: 761 EEIWEEYRKLQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMD 814
           + ++ E ++L+  +   A R   +  E L+  ++ DVN +  + ++V   D  +L+++ D
Sbjct: 744 DGLFAELKELERENESLAARLAHMEAEHLT-RQVKDVNGVPVLAAKVQANDMNQLRAMAD 802

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L++K+ + +I+L   ++  K  ++  VT+DL+ + F+A  L +  A    GGGGGGRP 
Sbjct: 803 DLKQKLGTAVIVLAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRC-GGGGGGRPD 860

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ+GG + +K  +A+  V +++K
Sbjct: 861 LAQAGGKDPSKVGEALGYVETWVK 884


>gi|300814156|ref|ZP_07094439.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511813|gb|EFK39030.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 874

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/904 (38%), Positives = 525/904 (58%), Gaps = 70/904 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH++LPS SLIP ND +L+   +GM P K  FTG+  P  + VTT QK
Sbjct: 13  IRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPGKRVTTCQK 72

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R G    D+DNVG+T+RH TFFEMLGNFSFG YFK+  I  A++ LT   ++++  L+
Sbjct: 73  CIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNLEINKDDLW 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180
           +TVY +D+EAF +WK   G++ D+IIR+   DNFW + E GP GPC+EI+ D+G      
Sbjct: 129 VTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVDRGLKYGSI 187

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  PGG      EG+R+IE+WNLVF QF++  K     L   +IDTGMGLER+ATVLQ  
Sbjct: 188 DERPGG------EGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQGT 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID    +I   E+++G KY  +    V+ RVI DH+R+ +FL+ D + P+NEGRG
Sbjct: 242 NNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEGRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG  +  +  L   +    G  Y EL++    I++ ++ E+E+F
Sbjct: 302 YVLRRLIRRAARHGRLLGIKKTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEEKF 361

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             T++ G+ +LD  +  L    ++IL+G+ +FKLYDT+G P D+ ++IL  +G   +D+ 
Sbjct: 362 QMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MDMD 420

Query: 417 SFNQALEEQRSRAR-AH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            FN  +++Q+ RAR AH   ++G  S T E ++   K      +F+GY+         ED
Sbjct: 421 GFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKFK-----NEFVGYE---------ED 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           +   CQ   I        I K   +   I  E    +K  ++ D+TPFY E GGQ+GDTG
Sbjct: 467 K---CQANII-------GIFKDYTEVQNIGPE----EKAVLILDKTPFYGEGGGQVGDTG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GD  + ++ D +K  EG+ +H   V  G + T+      ID   R  +  NHS THL
Sbjct: 513 YIDGDDFKCRVIDTKKTREGLHLHIVEVLDGEV-TKGPCFAEIDVVRRNNIRRNHSVTHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG HV+Q GS +  D LRFD TH + ++  E+K +E+ VN  I + L V T 
Sbjct: 572 LHKALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEERVNQKIFEALSVTTT 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + N + A   GA  L   KY D VRV+S+     G +S  LCGGTHV +T EI +  I+S
Sbjct: 632 VTNPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES + +G+RRIE +TG      L         +A  LK ++ +++ ++     E +KL  
Sbjct: 687 ESGVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKISSSLNEIKKLNK 746

Query: 772 ----LIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               L H+  K +L N+ D    K   +N+++H   + D   L+ + D ++ K+ S +++
Sbjct: 747 AIDSLKHSSDKDELSNILDEVKEKNG-INYLTHKFKDKDVNSLRDIADMVRNKLNS-VVV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L+    + K + +  +++DL+   ++A  + +  +KV  GGGGGGR  MA +GG +  K 
Sbjct: 805 LLATENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVC-GGGGGGRADMATAGGRDLGKV 863

Query: 886 DQAI 889
            +A+
Sbjct: 864 SEAL 867


>gi|307243232|ref|ZP_07525403.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306493360|gb|EFM65342.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 878

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 341/908 (37%), Positives = 523/908 (57%), Gaps = 67/908 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR+ F +FF+   H +  S SLIP ND +L+  NSGM P KN F+G E P    ++T
Sbjct: 6   LNEIRSRFTKFFESKEHYIAKSHSLIPSNDKSLLLINSGMAPLKNYFSGVEIPPKNRMST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+R G    D++NVG T RH TFFEM+GNFSFG YFK+ AI  AW+ +T   ++ + 
Sbjct: 66  VQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKEAIAWAWEFITVWLEIPEE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           +L++TVY+ D+EA+ LWK + G   +KI+R+  +DNFW +   GPCGPCSEI+FD+GE  
Sbjct: 122 KLWVTVYESDDEAYNLWKDMIGFPEEKIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGEKY 180

Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C PG       + +R++E WNLVF QF+++       L   +IDTGMGLERMA 
Sbjct: 181 GCGCEDCKPGC------DCDRFLEFWNLVFTQFDRKEDGSYGELDHKNIDTGMGLERMAC 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+QE    +++D  + ++    Q+ G+ Y  +     + R+I DH+RS +F++ DGILP+
Sbjct: 235 VMQEVDTIFEVDTIRSVLNRVCQLAGITYGQDAKKDKSVRIITDHIRSVAFMVGDGILPS 294

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA  + RLLG  +  +  ++  +    G AYPELI+    I++ +  
Sbjct: 295 NEGRGYVLRRLLRRAARHGRLLGIKDNFLNEIVEVVFDTCGQAYPELIEKNDYIKKVIGI 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+FG+TL++GL +L      L  G  + ++G+ AFKLYDT G PLD+  +IL   GL 
Sbjct: 355 EEEKFGETLEQGLEILKSYTEDLVAGGGDTISGEQAFKLYDTFGFPLDLTMEILEDEGLK 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFM 469
            +D   F + ++ Q+ RARA      G    E    SL++   ++ F GY +L++     
Sbjct: 415 -VDTEGFEKEMQAQKDRARAARGNTEGDAWKEDPLTSLED--ASSSFDGYHNLVK----- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              +S +KA+V    +V+    G +  ++ D+T FY   GGQ+G
Sbjct: 467 -------------------ASTIKAMVADNALVDTLEEGLEAAIILDETSFYPNGGGQVG 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  + D    ++ D  K A G   H   +  G L     +   +D   R   + NH+A
Sbjct: 508 DKGQILSDTGLFEVEDTVKGANGSIKHIGRIVSGSLTKGEKVETRVDKALRMDAARNHTA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + P  LRFD+TH + +T  E+  +E  VN+ I +  PV
Sbjct: 568 THLLHKALKEVLGDHVNQAGSLVEPYRLRFDITHFEAMTKEEISRVEAMVNEFILEAHPV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +MN  +A A GA AL G KY + VRVV +     G  S  LCGGTH+ +T ++ +  
Sbjct: 628 TAELMNINEARAMGAMALFGEKYGEEVRVVKM-----GDCSVELCGGTHLDNTSQVGMFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IVSE  + AG+RRIEAITG+    +++ +D  + +++  +K  + N+V R   + +E ++
Sbjct: 683 IVSEGGVAAGVRRIEAITGRAVYQYMLAKDSLINNISDIMKTREDNLVVRANSLVDENKQ 742

Query: 770 LQL-IHA-KRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L+  +H  K K+ +    N  D S   I  V  ++    ++D   L+ V D L+ K+ + 
Sbjct: 743 LEKEVHDLKSKISMQNAGNALDDSLD-IKGVKLLTAKYEDMDIDTLREVADNLRDKLGTS 801

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L  I+ + K + +   ++D +D+  +A ++ R  AK+  GG GGGRP+MAQ+GG + 
Sbjct: 802 VVVLANIAGD-KINFVATASKDAIDKGAHAGNIVREVAKI-AGGKGGGRPNMAQAGGSDK 859

Query: 883 NKADQAIA 890
              DQA+A
Sbjct: 860 TMVDQALA 867


>gi|323692006|ref|ZP_08106254.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503929|gb|EGB19743.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 879

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 347/906 (38%), Positives = 507/906 (55%), Gaps = 53/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 6   VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+  ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RYIE+WN VF QF          L   +IDTGMGLER+A V+QE  
Sbjct: 181 GCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    ++   KY+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 241 SLFTVDTNKALLDRVCELAHTKYQEDHETDVSLRIVADHIKSCTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG     M  L   +       YPEL +   +I + L  E+++F 
Sbjct: 301 VLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K+   +L+GD AFKLYDT+G P+D+ ++IL  + L+ +D   
Sbjct: 361 KTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A+++Q+ +ARA          +   +   +    T+F GY      K  +E      
Sbjct: 420 FTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGY-----GKLAEE------ 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EIVE    GQ   ++  +TPFYA  GGQ  D G     
Sbjct: 469 ------------SEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVITAQ 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D  K   G   H   V +G+ +T  ++ L +D +NR     NHSATHLLH AL
Sbjct: 517 DAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA  LPV T +M  +
Sbjct: 577 RTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVMTLD 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T  I    IVSE+ I 
Sbjct: 637 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEAGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T     ++    +++L   A  +K +   +  ++E + +E + L   + K 
Sbjct: 692 AGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSENEKL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G++++  +  
Sbjct: 752 KSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIASVQD 811

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K   +  V  E      +A +L +  A ++GGGGGG RP+MAQ+GG N        AG+
Sbjct: 812 GKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGGGG-RPNMAQAGGKNP-------AGI 863

Query: 893 ASFLKK 898
              LKK
Sbjct: 864 PDALKK 869


>gi|330839006|ref|YP_004413586.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329746770|gb|AEC00127.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 874

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/901 (38%), Positives = 525/901 (58%), Gaps = 61/901 (6%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L+FF +K GH  LPS+SLIP NDPTL+   +GM PFK  FTG+ KP    +TT
Sbjct: 7   NELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTRITT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVR G    D++NVGRT RH T+FEMLGNFSFG YFK+ AI  AW+ LT   DL + 
Sbjct: 67  SQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDLPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TVY +D+EA  +W++  G   D I+++  +DNFW +   GPCGP SEI+ D GE  
Sbjct: 123 KLWVTVYPKDDEAAAIWREQPGFPQDHIVKL--DDNFWEIG-PGPCGPDSEIYIDLGEER 179

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ K 
Sbjct: 180 GCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQNKK 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N++ DL   +I+ + +V+G+ Y G N    V+ +VI DH RS + +I DGILP+NEGRG
Sbjct: 240 TNFETDLLFPIIEYASKVSGVVY-GENAEKDVSLKVIADHARSMAIMIMDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDE 356
           YVLRRI+RRA+ + R+LG  +  +   + A+      A  + EL + K  I++ +  E++
Sbjct: 299 YVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIEED 358

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TL +G+ LL+G +  L ++  ++L G++ FKLYDT+G P ++  +IL    +  +D
Sbjct: 359 RFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHENEME-LD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             SF +A+EEQR RARA                        Q +    L G      D  
Sbjct: 418 KDSFEKAMEEQRERARAAR-------------------QENQRVAVPDLSGI-----DTS 453

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            LC    +D  N   S V AI + G +V+E   G++  ++   TPFYAE GGQ+GD G  
Sbjct: 454 HLC----VD-ENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAGLL 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +  R+Q+ + +K  +G   H   VE G+L+    + + ID+  +   + NH+ATHLL 
Sbjct: 509 ETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHLLQ 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G  V+Q GS + P+ LRFD ++ +P+T+ +L+ +E  VN+ I    PV    M
Sbjct: 569 AALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIAQM 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A   GA AL G KY D VRVVSV        S  LCGG+HV + GEI +  IVSE+
Sbjct: 629 EIDKAKKLGAMALFGEKYGDVVRVVSVPD-----FSIELCGGSHVKNIGEIGMFKIVSET 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I +G+RRIEA+TG+ A  ++  + E L + A   K     +V  +E    E +KL+   
Sbjct: 684 GIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQEI 743

Query: 775 A---KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A   K +   +V+ L   K  I D++F S I+   +  +L+ + D L  +++SG+++L  
Sbjct: 744 ASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVLAA 803

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + E K S++   ++  + +  +A ++ + +AK++ GGGGGGR  MAQ+GG    K  +A
Sbjct: 804 -AHEGKVSLVAKASDAAVAKGAHAGNIVKAAAKIV-GGGGGGRKEMAQAGGKEPAKMPEA 861

Query: 889 I 889
           +
Sbjct: 862 L 862


>gi|289432002|ref|YP_003461875.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288945722|gb|ADC73419.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 876

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 530/903 (58%), Gaps = 51/903 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    + + QK
Sbjct: 12  LRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGMAKPENPRMASCQK 71

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C R      D+++VG  + H T FEMLGNFS G YFK+ AI  AW+ +T+  ++   RL+
Sbjct: 72  CFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPAERLW 126

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---C 182
           ITVY +D+EA  LWK+  G+  ++I+R+   DNFW  A ++GPCGPCSE+ +D G+   C
Sbjct: 127 ITVYLDDDEAIALWKE-QGVPENRIVRLDAADNFWGPAGDSGPCGPCSEVHYDFGQETGC 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                  S + G R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++Q K N
Sbjct: 186 GKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQSKKN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300
            Y+ D+F  +++ +  ++G KY  +   +   R++ +H R  +FLIADG++P   GRGYV
Sbjct: 245 VYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKAGRGYV 304

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ + R LG  +P ++ +  A+ T M   YPEL + +  + E + SE+ RF +
Sbjct: 305 LRRLLRRAVLFGRRLGLEKPFLVDMAGAVITRMSGIYPELKKRQTYVLEMIASEEARFSE 364

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL  GL LL+ ++    K   ++G  AFKLYDT+G P+++  +I   +GL+ +D+  F  
Sbjct: 365 TLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDLDGFES 422

Query: 421 ALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            +E QR++AR+       +  T +   +++   G T F+GY+L R             QK
Sbjct: 423 EMEVQRTKARSSRKFSFDAAATAEAVKNMRHG-GKTCFVGYELAR-------------QK 468

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I  G 
Sbjct: 469 ----------STIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITGGG 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L  AL  
Sbjct: 519 RFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQTALRE 578

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    M    A
Sbjct: 579 VLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMAYRHA 638

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SESS+ AG
Sbjct: 639 LEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESSVGAG 695

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKR 777
           +RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+  + + +R
Sbjct: 696 LRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQNLER 755

Query: 778 KLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++     +    K  D   V  +   ++ V++  L+   D L+ K+ SG+I+L G   E 
Sbjct: 756 QMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVTED 814

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K   L +VT DL+ + ++A ++ +  +++  GGGGGG+P+MAQ GG + +K D+A+  V 
Sbjct: 815 KPFFLCMVTPDLIAKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKSKLDEALQAVK 873

Query: 894 SFL 896
             +
Sbjct: 874 GMI 876


>gi|260887236|ref|ZP_05898499.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260863298|gb|EEX77798.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 871

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 350/901 (38%), Positives = 525/901 (58%), Gaps = 61/901 (6%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L+FF +K GH  LPS+SLIP NDPTL+   +GM PFK  FTG+ KP    +TT
Sbjct: 4   NELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTRITT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVR G    D++NVGRT RH T+FEMLGNFSFG YFK+ AI  AW+ LT   DL + 
Sbjct: 64  SQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDLPKE 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TVY +D+EA  +W++  G   D I+++  +DNFW +   GPCGP SEI+ D GE  
Sbjct: 120 KLWVTVYPKDDEAAAIWREQPGFPQDHIVKL--DDNFWEIG-PGPCGPDSEIYIDLGEER 176

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ K 
Sbjct: 177 GCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQNKK 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N++ DL   +I+ + +V+G+ Y G N    V+ +VI DH RS + +I DGILP+NEGRG
Sbjct: 237 TNFETDLLFPIIEYASKVSGVVY-GENAEKDVSLKVIADHARSMAIMIMDGILPSNEGRG 295

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDE 356
           YVLRRI+RRA+ + R+LG  +  +   + A+      A  + EL + K  I++ +  E++
Sbjct: 296 YVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIEED 355

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TL +G+ LL+G +  L ++  ++L G++ FKLYDT+G P ++  +IL    +  +D
Sbjct: 356 RFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHENEME-LD 414

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             SF +A+EEQR RARA                        Q +    L G      D  
Sbjct: 415 KDSFEKAMEEQRERARAAR-------------------QENQRVAVPDLSGI-----DTS 450

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            LC    +D  N   S V AI + G +V+E   G++  ++   TPFYAE GGQ+GD G  
Sbjct: 451 HLC----VD-ENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAGLL 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +  R+Q+ + +K  +G   H   VE G+L+    + + ID+  +   + NH+ATHLL 
Sbjct: 506 ETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHLLQ 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G  V+Q GS + P+ LRFD ++ +P+T+ +L+ +E  VN+ I    PV    M
Sbjct: 566 AALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIAQM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A   GA AL G KY D VRVVSV        S  LCGG+HV + GEI +  IVSE+
Sbjct: 626 EIDKAKKLGAMALFGEKYGDVVRVVSVPD-----FSIELCGGSHVKNIGEIGMFKIVSET 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I +G+RRIEA+TG+ A  ++  + E L + A   K     +V  +E    E +KL+   
Sbjct: 681 GIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQEI 740

Query: 775 A---KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A   K +   +V+ L   K  I D++F S I+   +  +L+ + D L  +++SG+++L  
Sbjct: 741 ASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVLAA 800

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + E K S++   ++  + +  +A ++ + +AK++ GGGGGGR  MAQ+GG    K  +A
Sbjct: 801 -AHEGKVSLVAKASDAAVAKGAHAGNIVKAAAKIV-GGGGGGRKEMAQAGGKEPAKMPEA 858

Query: 889 I 889
           +
Sbjct: 859 L 859


>gi|330443884|ref|YP_004376870.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328806994|gb|AEB41167.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 874

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 331/886 (37%), Positives = 492/886 (55%), Gaps = 57/886 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +SN+  +R+ FL F+    H+++PSS + P  DP+++FTN+GM  FKNIF  +E   Y  
Sbjct: 2   LSNL--LRSKFLNFYANRHHKIIPSSPVFPHQDPSILFTNAGMNQFKNIFLNKETVSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK  A   AW+     F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKADATTFAWEASLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               +Y TV+++D+EAF LW++   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 APEFIYATVHEKDDEAFALWERY--LPTERIFRLTDKDNFWSMADTGPCGYCSELLFDRG 177

Query: 181 ECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                   P    EGER++E WNLVFM+F +  + +   LP   +DTG GLER+ +++  
Sbjct: 178 PKFGSASSPLEDIEGERFLEYWNLVFMEFNRTAEGDLLSLPNKHVDTGAGLERLISLISG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ + LI   EQ++G  Y  +  +    RVI DH+RS SF IADG+LP N  R
Sbjct: 238 TNTVFEADVLRMLIGKIEQLSGKTYCPDSPHGAAFRVIADHIRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y R LG+ +P +  ++P+L   MG AYPEL  +   I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGRRLGFQQPFLAEIVPSLADAMGEAYPELRLSLTQIQEVLSNEEEC 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDII 416
           F KTL RG  LL  VL       +++G+ AFKL DT+GLP+D  +  L A+     +D+ 
Sbjct: 358 FLKTLHRGGNLLQQVLKASSSSSVISGEDAFKLKDTYGLPID--EIFLLAKDYNFQVDME 415

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F    +E + R+R HS+       + ++  L E   + +FIGYD L    F        
Sbjct: 416 TFALLEQEAKERSRKHSVKTQE-EVKVVYEQLPEL--SVEFIGYDTLSCDTF-------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          ++AI+ Q +IV     G++  ++   TPFYAE GGQ+GD+G    
Sbjct: 465 ---------------IEAIISQDQIVSSLQEGEEGILILKTTPFYAEKGGQVGDSGEIFS 509

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 ++       G   HH  + +G L    ++   ++   R++++ NH+  HLLHHA
Sbjct: 510 QEGSFIVSHTTTPQAGFIAHHGKMSQGKLSQAEAVTTQVNCIRRKKIANNHTGCHLLHHA 569

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L+++LG+H+ Q GS +    +R D T+ K I   +L SIE  VND+I +N PV+TR    
Sbjct: 570 LASVLGNHIRQAGSYVDETKIRLDFTYPKAIAPEDLASIESLVNDLIRENHPVLTRETLY 629

Query: 657 EDAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            D + S       G KY D VRVVS      GV S  LCGGTH  +TG++    IV E +
Sbjct: 630 SDVMNSKEIKQFFGDKYGDTVRVVS-----AGV-SHELCGGTHAQATGDLGYFRIVKEHA 683

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----- 770
           I  GIRRIEAITG+ A +    + + L   A  L+  +  ++ ++    E+ +K      
Sbjct: 684 IATGIRRIEAITGEEAEAASRQERKLLDEAALLLQAPKDQLLAKLTHALEQRKKQDKVIS 743

Query: 771 ----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +LI A+    +N      H   +++++ + ++E +   L+   +   +K+    I 
Sbjct: 744 DLENKLISAQLDELINQR----HSSHEISYLVYHLAEKEGHHLQQYANCFHQKLPQRSIS 799

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
           L    K +K  VL  ++EDL  + F A +L +      GG  GG +
Sbjct: 800 LWITKKNRKYIVLSRISEDLAAQGFQAQELLKAILAPYGGRWGGAK 845


>gi|163790359|ref|ZP_02184791.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159874430|gb|EDP68502.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 882

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 360/920 (39%), Positives = 531/920 (57%), Gaps = 72/920 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH++ PS+SL+P  DPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   NEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT+E    LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEEKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY ED +A  +WK+  GL+ D II +   DNFW +   GP GP SEIF+D+GE 
Sbjct: 123 EKLYVTVYPEDTDAKMIWKEKIGLTDDHIIDVA--DNFWDIG-AGPSGPDSEIFYDRGEA 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ER++EIWNLVF +F  +       LP  +IDTGMGLER+ +
Sbjct: 180 FNDLAENDPENYPGG--ENERWLEIWNLVFSEFNHKRDGTYEPLPNKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I+  + ++G+K  G N    ++ +VI DH+R+ SF I DG LP
Sbjct: 238 ILQDAPTNFETDLFMPIIEKVQALSGIKKYGENATDDISFKVIADHVRAVSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  M  L+P +   M S YPE+++ +  I + ++
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDKAFMFKLVPVVGNIMNSHYPEILEQEEFIVKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +E+ERF +T++ GL +L+  +S L   G+  I   D+ FKLYDT+G P+++ ++     G
Sbjct: 358 NEEERFHETINDGLTILNERISELKVNGEKTIAGSDI-FKLYDTYGFPVELTEEFAQDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              +D   F   +  QR RARA   G  S G   K++  L ++   + F+GY+       
Sbjct: 417 FE-VDHEGFEIEMTAQRDRARAARSGEKSMGIQTKLFAGLNDE---SLFVGYN------- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                 I+  I     +V  A +G++V ++FDQTPFYAE GGQ+
Sbjct: 466 ----------------KTTAMGILAVIATDEALVTTAKTGEQVRLIFDQTPFYAEMGGQI 509

Query: 529 GDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
            D G  I D    I  ++TDV+K   G  +H   V   +   E +  L +D   R +++ 
Sbjct: 510 ADKGI-IKDTTGKIVAKVTDVKKAPAGQPLHTVEVLESLTVGE-TYKLEVDETLRNKITR 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  ILG H +Q GS +T + LRFD TH   IT  EL  +E  VN+ I +
Sbjct: 568 NHTATHLLHQALKDILGEHANQAGSLVTQNHLRFDFTHFGQITQKELNEMEQIVNEKIWE 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPVVT       A   GA AL G KY D VRVV+V     G +S  LCGG HVS+T EI
Sbjct: 628 SLPVVTVETEIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIW 764
            +  I+SES I AG+RRIEA+T + A + L  + ++L ++A  +K  Q  +VV +V+++ 
Sbjct: 683 GIFKIISESGIGAGVRRIEAVTSEAAYNLLQTEQKRLNAVADLVKAQQTQDVVTKVQQLQ 742

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819
            E ++LQ  +   + +L  +        + +VN ++ + +EV   D  +L+ + D  ++K
Sbjct: 743 TELKELQKENESLQAKLASDQAGDIFKNVQEVNGITVVSAEVDVNDMNQLRQLADQWKQK 802

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S ++ L G SK+ K ++L  V +  + + F A DL +  A ++ GGGGGGRP MAQ+G
Sbjct: 803 AVSNVLTL-GFSKDGKVNLLTAVDDATIKKGFKAGDLIKTIAPLV-GGGGGGRPDMAQAG 860

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+A V  ++ +
Sbjct: 861 GKNPAGLQDALAKVTEWVNE 880


>gi|289450565|ref|YP_003475604.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185112|gb|ADC91537.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 886

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 350/904 (38%), Positives = 515/904 (56%), Gaps = 47/904 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SL+P  DP+++  N+GM P K  F G E P  + VTT
Sbjct: 6   LNEIREKYLSFFESKGHLRLPSFSLVPQKDPSILLINAGMTPLKPYFIGTEVPPCKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG T+RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L + 
Sbjct: 66  CQKCIRT----PDIERVGYTSRHGTFFEMLGNFSFGDYFKAEAISWAWEFITEVLKLPEE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D+EA+  W +  G++ +KI R+   DNFW    TGPCGPCSEI FD+G  +
Sbjct: 122 RLYITVYKDDDEAYDYWHQKIGVAENKIYRLGKEDNFWEHG-TGPCGPCSEIHFDRGPNV 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R++E WNLVF QF++Q       +   +IDTG GLER A ++Q   
Sbjct: 181 GCGRPDCHVGCDCDRFVEFWNLVFSQFDRQEDGTYLPMVHKNIDTGGGLERFACIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++ A  ++  + Y  +++  V  RVI DH+RS++ +I+DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVRRILDAVCKIAKVHYGNDHMADVAIRVITDHIRSTTMMISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  Y RLLG     +  LLP +  E   AYPEL + +  I   + +E++RF 
Sbjct: 301 VLRRLLRRAARYGRLLGIDGLFLHDLLPVVVQESCGAYPELKEREDYILRVIETEEKRFD 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+ +G  LLDG ++   K     L+GDV FKL+DT+G PLD+ ++I   +G++ +D   
Sbjct: 361 KTVKQGSQLLDGYINEAKKAGSGELSGDVVFKLHDTYGFPLDLTREIAAEQGIS-VDEAG 419

Query: 418 FNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++ Q+  ARA      GS        +  E    TQF+GY     S+F  + +   
Sbjct: 420 FKKNMQRQKDEARAALKAKGGSAWAAGCLPAEVEHKNPTQFVGY-----SEFSAKGK--- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF--DQTPFYAEAGGQLGDTGCA 534
                  L   +SS      + GE +   ++G   +V+   D+TPFYA  GGQ+GD G  
Sbjct: 472 -------LLYIISSD-----EAGEPILLPMAGVDADVILITDRTPFYATGGGQVGDIGTI 519

Query: 535 IGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            G+ G+++++ D  K AEGIF+HH  V  G L   M L L ++   R  +  NHSATHLL
Sbjct: 520 TGEHGLKVEVKDTTKTAEGIFLHHCHVIAGSLEPGMELDLAVNRPVRMDIMRNHSATHLL 579

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL T+LG+HV+Q GS +  + LRFD  H KP T+ EL+ IE  VN  I  N   VT +
Sbjct: 580 HKALRTVLGTHVTQAGSLVNAEHLRFDFHHMKPCTAEELRQIEAEVNRAILANYQSVTEV 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M   +A   GA AL   KY D VRVVS+     G +S   CGGTH+S T ++ + +IVSE
Sbjct: 640 MPMAEAKKKGAMALFDEKYGDMVRVVSM-----GDYSVEFCGGTHLSETSQVGIFHIVSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE----EYRK 769
            S+ +GIRRIEAITG  A   L    +     A  LK+   ++  R+ ++      E +K
Sbjct: 695 GSVASGIRRIEAITGSAALRWLQDLQKTTAEAADMLKIKVADLPERIAQLQNDLKAETKK 754

Query: 770 LQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            Q + ++  K Q         + A +N+++  +S     +L+++ ++L+ ++    ++L 
Sbjct: 755 FQALQSELAKAQAAELKNKAREAAGINYLAAAVSVDGVDDLRAMAESLRSQLAPAAVVLG 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K   V +   E +     A +L + +A +  GGGGGGRP MAQ+GG +  K  +A
Sbjct: 815 AEINGKLNFVAMASPEAVKKGVKAGNLVKAAASI-SGGGGGGRPDMAQAGGKDVAKLPEA 873

Query: 889 IAGV 892
           +A  
Sbjct: 874 LAAA 877


>gi|294102019|ref|YP_003553877.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616999|gb|ADE57153.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 881

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 349/911 (38%), Positives = 519/911 (56%), Gaps = 61/911 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ F++F++  G +  PS SLIP NDP+L+FT +GMVPFK  + G ++P +    T QK
Sbjct: 9   IRSLFIDFWESKGSKHYPSFSLIP-NDPSLLFTIAGMVPFKPYYLGIQQPEFTRAVTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI   W+ LT+   L+  RLY
Sbjct: 68  CVRT----NDIENVGRTARHHTFFEMLGNFSWGDYFKKEAITWGWEFLTEVIGLEPERLY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y +DEEA+ +W+   GL  +KI R   ++NFW M  TGPCGPCSEI +DQG     G
Sbjct: 124 ATIYKDDEEAYSVWRNEVGLPENKIYRFDKDENFWFMGNTGPCGPCSEIIYDQGPEFSCG 183

Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            P + + G   +RY+EIWNLVF QF+ Q       LPK +IDTGMGLER+ +++Q    +
Sbjct: 184 KP-TCDVGCNCDRYLEIWNLVFTQFDLQEDGTLVPLPKKNIDTGMGLERLTSIVQRVRTD 242

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ DLFK LI     +TG+ Y  +   N   RVI DH+RS +F+IADGILPAN+GRGYVL
Sbjct: 243 FETDLFKPLIDHICAMTGVTYGSSPSHNLAVRVIADHIRSVAFMIADGILPANDGRGYVL 302

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA  Y +L+G   P ++ L P +   M   Y EL+  + +IE+ +  E++RFG+T
Sbjct: 303 RRLIRRAARYGKLIGLDRPFLLELFPDVLDLMADPYRELLDNRPMIEQIVSMEEKRFGRT 362

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L +G  L++  +S L    +  L+G +AF+LYDT+G PL++  +I CA     +D   F+
Sbjct: 363 LQQGTELIEQEISRLRLRHVDALSGTIAFELYDTYGFPLELTTEI-CAENDIKVDEAGFH 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E+QR RARA S  L S     ++  +  + G T F GY L                 
Sbjct: 422 VEMEKQRERARASSKQLSSEMKGDVYSQIAAEKGQTSFEGYVL----------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                 + + + V A+++ G+ V+    G+  E V   +PFYAE GG++GD G     G+
Sbjct: 465 ------SELDTEVVALIKDGQPVDFLSEGESGEAVLKVSPFYAERGGEIGDQGLLSAAGV 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD   +   + VH   V  G+L   +++  ++D + R  +  NH+ATHLLH ALS 
Sbjct: 519 KVCVTDTTSETADLIVHRVTVLEGVLTEGLAVHASVDKEKRESIRRNHTATHLLHEALSQ 578

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV Q GS +    LRFD TH + +T  ++ ++ED VN  I +N+P+ T   + E A
Sbjct: 579 VLGSHVRQAGSLVNEALLRFDFTHFESMTREQIAAVEDMVNRQILKNIPLETIESDLEQA 638

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA AL   KY D VRVV ++       S+ LCGG HV +TG+I    I+ E  I +G
Sbjct: 639 REMGAKALFDEKYGDIVRVVRIKD-----FSTELCGGLHVDATGDIGAFKIIKEEGIGSG 693

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            RRI A+TG  A          ++ L + L ++   +V  VE +  E + L     ++  
Sbjct: 694 TRRITALTGLNAFRAFQNSFRVVEDLCNVLTLTTDELVSHVENMQAEIKGL----GRKID 749

Query: 780 QLNVEDLSCHKIADVNFMSHIISE-----------VDSKELKSVMDALQKKIQSGIIMLV 828
           +L + +L+     D +    I+S            V +  L+ + D ++ K ++ +I+L 
Sbjct: 750 ELKLNNLAA--AIDESVKKEILSNGTSIFQGSFKGVSADMLRELCDRIKVKNKNIVIVLA 807

Query: 829 G-ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             IS+E    V +   E +    +A  + +  A +L GGGGGG+P +AQ+GG    K D+
Sbjct: 808 SQISEENVLIVAMADDEAMKAGAHAGKIVKEVAVIL-GGGGGGKPAIAQAGGKKPEKIDE 866

Query: 888 AIAGVASFLKK 898
           A   +   ++K
Sbjct: 867 AFHALRGIVEK 877


>gi|160891225|ref|ZP_02072228.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492]
 gi|317481112|ref|ZP_07940189.1| tRNA synthetase class II [Bacteroides sp. 4_1_36]
 gi|156859446|gb|EDO52877.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492]
 gi|316902713|gb|EFV24590.1| tRNA synthetase class II [Bacteroides sp. 4_1_36]
          Length = 872

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 347/927 (37%), Positives = 520/927 (56%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G KY  +  + +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG+AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LL+  ++     GK+EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKNEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +LKE  G T+F+GY  
Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D+TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDKTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVVDT-KKENNLPIH--ITKKLPEHMEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  E+A   GA AL G KY D VRV+    SVE+          CG
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--- 752
           GTHV++TG I ++ I+SESS+ AG+RRIEA TG R    +   ++ L  L +    +   
Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAPDL 726

Query: 753 QGNVVGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            G +   ++E        E++ K +    K +L  NV++++  K+  + F + + +E   
Sbjct: 727 AGTIRKYIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKV--IKFCAPLPAET-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +  + AI  V
Sbjct: 840 GGGGGQPHFATAGGKNADGLNAAIDKV 866


>gi|314936266|ref|ZP_07843613.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654885|gb|EFS18630.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 876

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 341/919 (37%), Positives = 511/919 (55%), Gaps = 77/919 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA++LW +  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTIHPEDVEAYRLWHENIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF ++          LP  +IDTGMGLER
Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E ++G KY  NN   V  +VI DH+R+ SF I+DG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  G+ +L+ +++   +    +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           +  +D+ +F   +E+QR+RAR A            +  ++  K   +QF+GY+       
Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDVLKNINTK---SQFVGYE------- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    +I+  ++  G+ V  A +G+ V  +  +TPFYA +GGQ+
Sbjct: 463 ----------------TTDYQTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    D   + + +V K   G  +H  IV+ G +     +  T++ + R+ +  NHS
Sbjct: 507 ADKGTVGNDQFEIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDATVNKEERKDIQKNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  ILG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + 
Sbjct: 567 ATHLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTKEEIDQVERRVNEEIWRGIS 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M  ++A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 627 VHIQEMPIQEAKEMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVDNTAEIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +      K  S+   LKV S   V  +V +I E  
Sbjct: 682 KIVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENE 741

Query: 768 RKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818
           ++L     +R  ++      N+ED    ++  +N    + +EV+    KE++  MD  + 
Sbjct: 742 KQLNKQLEQRNKEITSLKMGNIED----QVEMINGFKVLATEVEVSNPKEIRQTMDDFKS 797

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K Q  II+L G   E K S++  V ++L  +  A D+ +  A ++ GG GGGRP MAQ G
Sbjct: 798 KKQDTIIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGG 855

Query: 879 GPNGNKADQAIAGVASFLK 897
           G       +++  +  ++K
Sbjct: 856 GTQPENISESLRFIKDYIK 874


>gi|328957192|ref|YP_004374578.1| alanine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673516|gb|AEB29562.1| alanine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 882

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 362/925 (39%), Positives = 535/925 (57%), Gaps = 74/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF+  GH++ PS+SL+P  DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLSSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  +LY+TVY ED EA  +WK+  GL+ D I+ +   DNFW +   GP GP SEIF
Sbjct: 117 WLGLDPEKLYVTVYPEDTEAKNIWKEKIGLTDDHIVDVA--DNFWDIG-AGPSGPDSEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ER++EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAFNDLPENDPENYPGG--ENERWLEIWNLVFSEFNHKPDGTYEPLPNKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LER+ ++LQ+   N++ DLF  +I+  E ++  K  G N    ++ +VI DH+R+ SF I
Sbjct: 232 LERVVSILQDAPTNFETDLFMPIIKKVESLSKTKKYGENPTDDISFKVIADHVRAVSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  E  M  L+P + + M S YPE+++ +  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDEAFMYKLVPIVGSIMDSFYPEILEQEDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           I + +++E+ERF +T++ GL +L+  ++ L   G+  I   D+ FKLYDT+G P+++ ++
Sbjct: 352 IVKVIKNEEERFHETINDGLTILNERITELKAKGETSIAGSDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462
                G   +D   F + +  QR RARA   G  S G   +++  LKE+   + F+GY+ 
Sbjct: 411 YAEDEGFK-VDHEGFEKEMTAQRDRARAARSGEKSMGVQTRLFSDLKEE---SLFVGYN- 465

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                        ++ I    E++  A  G++V ++FDQTPFYA
Sbjct: 466 ----------------------KTTEMGTLEVIATDEELLNSAQPGERVRLIFDQTPFYA 503

Query: 523 EAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVER-GILRTEMSLVLTIDYQN 579
           E GGQ+ D G       +L  ++ +V+K   G  +H  IVE   +L    + VL +D   
Sbjct: 504 EMGGQVADKGVVTDTKGKLIAKVVEVKKAPAGQPLH--IVEVVEVLTVGETYVLEVDKSL 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R +++ NH+ATHLLH AL  ILG H +Q GS +TP+ LRFD TH   +T  EL  +E  V
Sbjct: 562 RNKITRNHTATHLLHQALKDILGEHANQAGSLVTPNHLRFDFTHFGQVTRDELDQMEQIV 621

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I +++ VVT   +   A   GA AL G KY D VRVV+V     G +S  LCGG HV
Sbjct: 622 NEKIWESISVVTVETDIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHV 676

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758
           S+T EI +  IVSES I AG+RRIEA+T + A + L  + ++L  +A+ +K  Q  +V+ 
Sbjct: 677 SNTSEIGIFKIVSESGIGAGVRRIEAVTSEAAYTLLQTEQKRLIEVAAVVKAQQTQDVIT 736

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKSVM 813
           +V+++  E ++ Q  +   + +L  +        I +VN ++ + +EVD K   +L+ + 
Sbjct: 737 KVQQLQTELKEAQKENESLQAKLANDQAGDIFKNIQEVNGVTIVSAEVDVKDMNQLRQLA 796

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           D  ++   S ++ L G S + K ++L  V  D + + F A DL +  A ++ GGGGGGRP
Sbjct: 797 DQWKQNAVSNVLAL-GFSNDGKVNLLTAVDADTIKKGFKAGDLIKTIAPLV-GGGGGGRP 854

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            MAQ+GG N      A+A VA ++K
Sbjct: 855 DMAQAGGKNPAGLSDALAKVAEWVK 879


>gi|260438422|ref|ZP_05792238.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292809008|gb|EFF68213.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 884

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 344/900 (38%), Positives = 515/900 (57%), Gaps = 62/900 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRKYLEFFESKGHLKMNSFSLVPQNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   +++ 
Sbjct: 66  CQKCIRTG----DIDNVGKTARHLTFFEMLGNFSFGDYFKHEAINWSWEFLTKVIGMEED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEIFFD 178
           RLY ++Y +D+EAF +W K  G+ A++I R   +     DNFW     GPCGPCSEI++D
Sbjct: 122 RLYPSIYADDDEAFNIWTKEVGVPAERITRFYRDENGDCDNFWEHG-AGPCGPCSEIYYD 180

Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +G     G P      + +R++E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 181 RGIKYGCGKPDCKVGCDCDRFMEVWNNVFTQFESDGHHHYTELKQKNIDTGMGLERLAVV 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     ++ G+ Y  + +  V+ R+I DH+RS +F+ +DGI+P+N
Sbjct: 241 VQDVDSVFDIDTMKAIRDKICELAGVTYMEDEHKDVSIRLITDHIRSVTFMASDGIIPSN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + R LG     +  L   +       YPEL + + LI + L +E
Sbjct: 301 EGRGYVLRRLLRRAARHGRTLGIDGLFLAKLATTVIDSSKDGYPELDEKRELILKVLTTE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E F KT+D+GLV+L  + S L K+    L+G+ AF+LYDT+G P+D+  +IL  +G   
Sbjct: 361 EENFNKTIDQGLVILSDLESRLVKEGKTCLDGEDAFRLYDTYGFPIDLTNEILEEKGFT- 419

Query: 413 IDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +D+  FN A+ +Q+  AR      + +G  +   +KI   +      ++F+GYD L    
Sbjct: 420 VDMDGFNNAMNKQKETARGARKETNYMGADATVYDKIDTRI-----TSEFVGYDTLE--- 471

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S +  +    +I +    G +  ++ ++TPFYA  GGQ
Sbjct: 472 --------------------TESEITVLTTSEDITDTLAEGMEGTIIVNKTPFYATMGGQ 511

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            GDTG  I +G   ++ D  +   G   H   V  G  +    + LT+D + R   + NH
Sbjct: 512 QGDTGVIICNGSVFEVIDTIRLKGGRVGHVGKVTAGSFKVGDKVTLTVDEKKRIDTAKNH 571

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL  AL  +LG+HV Q GS +TPD LRFD TH +P+T  E++ +E  VN+ I +++
Sbjct: 572 SATHLLQEALRIVLGNHVEQAGSLVTPDRLRFDFTHFQPMTEEEIEKVEAIVNEQIEKSI 631

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T+++  EDA  +GA AL   KY D VRVV +     G  S   CGGTHVS+TG I  
Sbjct: 632 DVETKVLAIEDAKKTGAKALFNEKYGDTVRVVCM-----GDFSKEFCGGTHVSNTGLINS 686

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES + AG+RRIEA+TG    ++    ++K   +    K +  NV  ++  +  E 
Sbjct: 687 FKIVSESGVAAGVRRIEALTGNGVFAYYKDIEKKYNDICKAAKATPANVEEKIAHMQAEI 746

Query: 768 RKLQLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQS 822
           + L       K +   E L    ++  DVN   F++  +++VD  EL+++ D L+ KI S
Sbjct: 747 KSLNSEIESLKNKAANEALGDVLNQAEDVNGVKFLAVKLNDVDMNELRNLSDDLKSKIGS 806

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+++L       K ++++  T+D++    +A ++ + +A  + GGGGGGRP+MAQ+GG N
Sbjct: 807 GVVVLASAMGSDKVNLIVTATDDIVKAGVHAGNIIKSAAPCV-GGGGGGRPNMAQAGGKN 865


>gi|81299685|ref|YP_399893.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|81168566|gb|ABB56906.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 899

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 358/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       TT QK
Sbjct: 34  IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 92

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +   RL 
Sbjct: 93  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 148

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185
           ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D   E    
Sbjct: 149 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 208

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           GL    E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   NNY+
Sbjct: 209 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 266

Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +IQA   +    Y  E  ++ V+ +VI DHLR+ + LIADG+  +N GRGYVLR
Sbjct: 267 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 326

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF +TL
Sbjct: 327 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 386

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL   L     D+I  G+ AF LYDT+G PL++ Q+I   +GL  +D+  F  A+
Sbjct: 387 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 443

Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479
             QR R++A   ++ L   T +     L E+   T+F+GY D +  +K            
Sbjct: 444 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPTEFVGYGDAVATAK------------ 488

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 489 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 536

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 537 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 595

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 596 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 655

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V     GV S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 656 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 710

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 711 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 770

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+  +G ++L    +E
Sbjct: 771 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 830

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++      ++ +             + GGGGGGRP++AQ+GG + +K  +AIA   
Sbjct: 831 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 890

Query: 894 SFLK 897
             LK
Sbjct: 891 DQLK 894


>gi|319760313|ref|YP_004124251.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039027|gb|ADV33577.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 884

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 348/919 (37%), Positives = 516/919 (56%), Gaps = 67/919 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  FL FF K  H+++ SSSLIP ND TL+FTNSGM  FKNIF G EK +++ V T
Sbjct: 5   IVDVRQEFLNFFHKKEHQIISSSSLIPENDQTLLFTNSGMNQFKNIFLGIEKVLFKRVVT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            Q+C+RAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW+LLT    F L 
Sbjct: 65  AQRCMRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKDSAIEFAWELLTDSNWFALS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSE 174
           + +++IT +  D E++ +W K  G+S  ++I+I       + +DNFW M   GPCGPCSE
Sbjct: 125 KDKIWITTHICDNESYDIWTKHIGISKKRVIKIGSKNGHYSDSDNFWKMGNIGPCGPCSE 184

Query: 175 IFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           IF+D G+  PG  P +  +   ERY+EIWNLVFMQF Q++      LP +S+DTGMGLER
Sbjct: 185 IFYDLGDKFPGVPPNNDMTASSERYVEIWNLVFMQFNQRSNGNLESLPMLSVDTGMGLER 244

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR--VIVDHLRSSSFLIADGI 290
           +  +LQ   +NY ID+FK+LI +  +V  +K    +I +    VI DH+R+ +FLI DGI
Sbjct: 245 ITAILQGMCSNYLIDVFKNLIISISEVMNVK---KSIADRSLYVIADHIRACAFLIKDGI 301

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+C+ R LG        L+  L + M      L     LIE+ 
Sbjct: 302 IPDNEGRGYVLRRIIRRAVCHGRKLGVNGIFFYKLVTPLISSMSYITEILCDQVDLIEKI 361

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E++ F  TL++GL LL   L  L  ++IL+G VAF+LY T+G PLD+ QDI C    
Sbjct: 362 LFNEEKLFENTLNKGLKLLRKSLIELKNNKILSGRVAFQLYSTYGFPLDLTQDI-CHEYN 420

Query: 411 AGIDIISFNQAL--EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
             ID + F+Q +  E+++S+       +    T  I  S       + F+GY      K 
Sbjct: 421 IKIDQLEFDQIMLKEKKQSKQLNRFCRVSGDITIPIDIS-------SIFVGY------KH 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +    K++                 A+ Q  E V+   S  +  V+ D TPFY E+GGQ+
Sbjct: 468 VTYRAKII-----------------ALFQNNEAVKIVKSNTESMVILDFTPFYGESGGQI 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +   +      KK   I V   I++ G +     +   ++   R+ + +NHS
Sbjct: 511 GDCGYLRAESGGVFEVRNTKKYGNITVQIGILKSGKINVGEEVFAQVNPLKRKLICLNHS 570

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  ILGSHV+Q GS I    LRFD +H   +T  ++ S+E+ +N  I  N  
Sbjct: 571 ATHLLHAALLEILGSHVTQKGSLINDRCLRFDFSHYDAMTEKQINSVENFINQQIWSNWV 630

Query: 649 VVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   +M  E A  +    +L  K YN  VRVV +     G  SS LC GTH  +TG+I L
Sbjct: 631 ITEDLMPIESAYNNTDIIMLSKKQYNQEVRVVRI-----GNFSSELCTGTHSKNTGKIGL 685

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV E  I AGIRRIEA T   A S +  +   ++++   +     +++ ++  +    
Sbjct: 686 FVIVKELGIGAGIRRIEATTKDLALSIIQRKRTLIQNIIQIMHTDDDHLLNKIHALKLFS 745

Query: 768 RKLQ----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---MDALQKKI 820
            KL+    ++  K++ Q  +   S H++  +  +  ++ ++++ EL++V   +  +++ +
Sbjct: 746 NKLEKEIRVLKNKQETQKILS--SAHEVYYIKNVPILVKQIENIELETVFYMVGCIKRHL 803

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +SG+I+L+         +++ VTEDL++R   N++D+       + GG GGG+   AQ+ 
Sbjct: 804 KSGLIVLINTRINNSIHLIVSVTEDLIERNHINSLDVVHYIMHNV-GGKGGGKSDFAQAK 862

Query: 879 GPNGNKADQAIAGVASFLK 897
             N     + +A V   L+
Sbjct: 863 IDNVINKSEFVANVKLLLR 881


>gi|119356090|ref|YP_910734.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|205830021|sp|A1BD33|SYA_CHLPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119353439|gb|ABL64310.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 888

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 347/931 (37%), Positives = 520/931 (55%), Gaps = 84/931 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y    
Sbjct: 2   NSREIRQSFLDFFDRKGHTIVRSAPVIPLDDPTLLFTNAGMNQFKDVFLDKGTRPYVRAA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L +
Sbjct: 62  DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWHLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY TVY +DEE++ LW++ + +  D II+    DNFW M ETGPCGPCSEI  D  E 
Sbjct: 122 ERLYATVYYDDEESYLLWQEETDIPHDHIIKFDEKDNFWEMGETGPCGPCSEIHIDLTED 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              G P  +    R IE+WNLVF+Q+ +Q       LP+  +DTGMG ER+  V+Q K +
Sbjct: 182 -GSGKPLVNAGDYRVIELWNLVFIQYNRQADGRLEPLPQKHVDTGMGFERVCAVMQGKAS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NYD D+F+ L     ++TG+ Y  +    + +  RV+ DH R+ +F + DG +P+NEGRG
Sbjct: 241 NYDTDVFRPLFDRITEITGVSYNASLDDPSDIAMRVLADHARTLTFALTDGAMPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ Y++ LG +EPL+  L+  L   MG  +PEL + +  +   +R+E+E F
Sbjct: 301 YVLRRILRRALRYSKTLGCSEPLLYRLVETLAASMGDVFPELRKQQQAVSRIIRAEEESF 360

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TLDRG+ + + +++ +      +++GD AF+LYDT G PLD+ + ++ A     +D  
Sbjct: 361 LATLDRGIEIFNELIAAVRSRGTTVVSGDDAFRLYDTFGFPLDLTR-LMAAEAGFEVDEE 419

Query: 417 SFNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            F++ ++EQ++RAR        L     E  WFS +     + F GY  L          
Sbjct: 420 GFDRCMKEQKTRARQDRRDKQHLKGDEGEWTWFSAER---TSVFTGYHSLE--------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                   +    GVS                +   ++ VV D+TPFYAE+GGQ GD G 
Sbjct: 468 -------ELASITGVS----------------IFSDRLLVVLDRTPFYAESGGQCGDRGW 504

Query: 534 AIGDGIRLQITDVQKKAEGIF-----VHHAIVERGILRTEMSL-------VLTIDYQNRR 581
                 RL+++D +K  + I      V  ++ +  I   ++S          ++D  +R+
Sbjct: 505 IETAAYRLRVSDTRKDGDMIVHLVTEVRDSVSDGAISPADLSFDEGKLACRASVDRSDRQ 564

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               NH+ATHLLH AL   LG HV Q GS ++ + LRFD +H   +TS EL  +E  VN+
Sbjct: 565 GTERNHTATHLLHAALRRTLGQHVQQKGSFVSSERLRFDFSHFARLTSEELAIVESEVNE 624

Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I    PVV  + +  ++AIA GA A  G KY DRVRVV +     G+ S  LCGGTHV 
Sbjct: 625 QIRSAEPVVKHQDIPYDEAIARGALAFFGDKYADRVRVVEI----AGL-SVELCGGTHVD 679

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGR 759
           S G+I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK+ +   V+GR
Sbjct: 680 SIGQIGLFKIVSESSVASGVRRIEALTGKAAEVLLWKEYRELQDIRQMLKLKADEEVIGR 739

Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLS---------CHKIADVNFMSHIISEVDSKEL 809
           + E+ +  ++L+     ++LQ+   E LS            +  + FM+  +  VD   L
Sbjct: 740 IAELADSKKELE-----KQLQVYRTEALSGILQRSLDAAESVGSIRFMTLRLEHVDQDSL 794

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGG 867
           +  + AL++K  +   +L    ++ K S+     E  +  F  +A  L R +A  +  GG
Sbjct: 795 RQAVLALREKDPASTGLLC-TEEDGKVSLTAFAGERAVGEFGLDAGKLVREAAAFV-RGG 852

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGG+P  A +GG +     +A    A+ +++
Sbjct: 853 GGGKPEFATAGGKDPEGIQKAFDSFAASVRE 883


>gi|257055557|ref|YP_003133389.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585429|gb|ACU96562.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
          Length = 888

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 341/907 (37%), Positives = 511/907 (56%), Gaps = 59/907 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   FL++F+++GH  +PS+SLI  +DPTL+F N+GMV FK  F G+  P Y   T+VQK
Sbjct: 6   INKRFLDYFERHGHTKVPSASLI-LDDPTLLFVNAGMVQFKPYFLGEVPPPYPRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           CVR G    D+D VG+T RH+TFF+M GNFSFG YFK+ AI+LAW+ +T   D     L+
Sbjct: 65  CVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKQGAIELAWEFITTSQDEGGLGLN 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY+ D EA  LW+ ++GL +++I     +DN+W M   GPCGPCSEI++D+G 
Sbjct: 121 PDRLWATVYEHDAEAAALWRDVAGLPSERIQFRGPDDNYWDMGVPGPCGPCSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQ------FEQQNKQERFILPKMSIDTGMGLERMAT 235
              G   G   + +RY+EIWNLVFMQ        +Q       LP+ +IDTGMG+ER+A 
Sbjct: 181 EY-GREGGPVVDEDRYLEIWNLVFMQEMRGELSPKQGHAPIGELPQKNIDTGMGVERVAY 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E+ +G +Y  ++   V  RVI DH RS   LIADG+ P 
Sbjct: 240 LLQGVENVYETDLVRPVITKAEEFSGRRYGADHADDVRFRVIADHARSGVMLIADGVTPG 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVLRR++RR +   RLLG  EP++      +   M  +YPE+ +    I + +R+
Sbjct: 300 NEARGYVLRRLLRRIVRSVRLLGVHEPVLPEFAAVVRDAMAPSYPEIARDFDRISDVMRA 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F  TL  G  + D       +    IL+GD AF+L+DT+G P+D+  ++   +GL+
Sbjct: 360 EEEAFLATLTSGSRIFDLAAQETKRAGGTILSGDKAFQLHDTYGFPIDLTLEMAAEQGLS 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            +D   F   +E+QR RA+A +    +G  +  ++  L E++G T+F+GY  L+      
Sbjct: 420 -VDEEGFRTLMEQQRQRAKADAASRKTGHGDLSVYRKLLEEHGETEFLGYTDLQ------ 472

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             ++ V  ++  G+ V  A  G   E+V D+TPFYAE GGQ+ D
Sbjct: 473 -----------------ATARVLGLLVDGKPVRSASEGSVAELVLDRTPFYAEGGGQIAD 515

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  IG+G  L++ DVQ+   G+FVH   V  G +  +  L  ++D   R  ++ +HSAT
Sbjct: 516 TGVLIGEGAELKVLDVQRLVPGLFVHRVEVVAGEVGVDTQLTASVDGTRRASIARSHSAT 575

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H A+    G+  +Q GS  TP  +RFD T  K ++   L  +E+ VND +  ++ V 
Sbjct: 576 HLVHAAVRGAYGNRAAQAGSLNTPGRMRFDFTTPKSVSDDVLTEVEEEVNDYLQTDVEVQ 635

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
                ++ A+  GA AL G KY DRVRVV     D G +S  LCGGTHV   G++ L+ +
Sbjct: 636 AYTTTKDRALELGAIALFGEKYGDRVRVV-----DMGDYSRELCGGTHVERIGQLGLVKL 690

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VS+SS+ +G+ R+EA+ G  A  H+  +   +  LAS LKV    V  R++++    R  
Sbjct: 691 VSDSSVGSGVHRVEALVGTDALRHVRKEQLLVSQLASTLKVPADEVPSRIQDVLTRLRNA 750

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS-- 822
           +    + +L+  +   S       +IA V+ ++  +  EVD+  L+ +   ++ ++ S  
Sbjct: 751 EKEIEQLRLREVLNSASTLAERAREIAGVSVVAERLDQEVDAGALRKLTGEVRNRLGSRP 810

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G++ L   S E K S ++  T +  D   A      +   L GG GGG+P MAQ GG   
Sbjct: 811 GVVALFAPSGEGKVSFVVATTAEARDAGLAAGKLVPAFAELVGGRGGGKPDMAQGGGSRP 870

Query: 883 NKADQAI 889
              +QAI
Sbjct: 871 EGVEQAI 877


>gi|294628346|ref|ZP_06706906.1| alanyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831679|gb|EFF90028.1| alanyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 890

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 352/923 (38%), Positives = 520/923 (56%), Gaps = 80/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSPQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYKDDDEAEQIWHEVVGVPKERIQRLGMKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E  +   ++ F     LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTGKDNFEILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I+ + ++TG+ Y   +   V+ RV+ DH+R+++ LI DG+ 
Sbjct: 238 AMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHASDVSLRVVTDHMRTATMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE+  
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVRDLIDVVVNMMGQQYPELVTDRERIEKVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  ++   +   ++L+GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEENAFLKTLKAGTNILDTAVTETKQSGGKVLSGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T FIGY        
Sbjct: 418 LS-VDEEGFRRLMKEQRERAKADAQAKKTGHADLGAYREIADTAGETDFIGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S+IV  +V  G     A  G +VEVV D+TPFYAE GGQ+
Sbjct: 469 --------------TDTEGESTIVGLLV-DGVSSPAATEGDEVEVVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   +  G  ++I D QK   G++VH  +V+ G +        +ID + R+ ++  H
Sbjct: 514 GDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRKAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVHAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIK-------GRPEELPEKV 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ         K  DV  ++ +  +V       +L+ +
Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGVALVTGQVPDGTTPDDLRKL 799

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +  ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGG
Sbjct: 800 VLDVRGRIQGGRAAVVALFTVNNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+P +AQ GG N     +A+  V
Sbjct: 859 GKPDVAQGGGQNPAAVGEAVDAV 881


>gi|205830241|sp|Q31PW3|SYA_SYNE7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 358/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       TT QK
Sbjct: 11  IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +   RL 
Sbjct: 70  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185
           ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D   E    
Sbjct: 126 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 185

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           GL    E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   NNY+
Sbjct: 186 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 243

Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +IQA   +    Y  E  ++ V+ +VI DHLR+ + LIADG+  +N GRGYVLR
Sbjct: 244 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF +TL
Sbjct: 304 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 363

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL   L     D+I  G+ AF LYDT+G PL++ Q+I   +GL  +D+  F  A+
Sbjct: 364 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 420

Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479
             QR R++A   ++ L   T +     L E+   T+F+GY D +  +K            
Sbjct: 421 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPTEFVGYGDAVATAK------------ 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 466 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 514 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V     GV S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+  +G ++L    +E
Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++      ++ +             + GGGGGGRP++AQ+GG + +K  +AIA   
Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 867

Query: 894 SFLK 897
             LK
Sbjct: 868 DQLK 871


>gi|328950125|ref|YP_004367460.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328450449|gb|AEB11350.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 896

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 336/855 (39%), Positives = 482/855 (56%), Gaps = 77/855 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  +L+FF+  GH  LPS SLIP +DPTL+FT +GM P K  F G  +PV+    
Sbjct: 2   RTAEIREKYLKFFESKGHLALPSFSLIPEDDPTLLFTVAGMAPLKPYFLGA-RPVFPGHE 60

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              + V T QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK  AI  AW+ LT
Sbjct: 61  GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKREAILWAWEFLT 116

Query: 116 KE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168
                 LD  RLY+TV+++D+EA+++W+   G+  ++I R   ++NFW     S    GP
Sbjct: 117 SPEWLGLDPDRLYVTVFEDDDEAYRIWRDEVGVPEERIGRFGEDENFWPANAISQGPNGP 176

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEE-------GERYIEIWNLVFMQFEQ----QNKQERF 217
           CGPCSEIF+D+G   PG   GS++E       G+R++E+WNLVF Q+ +        +  
Sbjct: 177 CGPCSEIFYDRG---PGF--GSADETGPNTGSGDRFVEVWNLVFTQYNRTGPVPGPGQLE 231

Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVD 277
            LP+ +IDTGMGL R+A +LQ+  + YD D F+ +I    +++G  YEG   V+HRVI D
Sbjct: 232 PLPQRNIDTGMGLYRVAAILQDVQDFYDTDTFRPIIDRVVELSGRPYEGAASVSHRVIAD 291

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+R+    ++DG + +N GRGYV+RR++RRA+ +  LLG  EP M  L P +   +G  Y
Sbjct: 292 HVRAVVAALSDGAVFSNTGRGYVIRRLLRRAVRHGYLLGLREPFMYRLAPVVAEVLGDYY 351

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+       E+ +R E+ERF  TL+ G+  L+ +L  + +  +L+G+ AF+LYDT+G P
Sbjct: 352 PEMRDNLPATEKAIRLEEERFLTTLESGIRRLEDLLQGIPQGGVLSGEEAFRLYDTYGFP 411

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGAT 455
            D+  +I   RG+  +D   F +A+  Q+ RAR  S   G     + +   +L    GAT
Sbjct: 412 WDLTVEIAAERGVR-VDREGFERAMARQQERARKASAFTGEVFVKSAEALDTLVAARGAT 470

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVV 514
           +F GY  L      +++ +VL                  ++ +GE  +E A +G++V+VV
Sbjct: 471 EFTGYTTL------EDEGEVL------------------LILEGEAELERAEAGREVQVV 506

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+TPFYAE GGQ+GD G     G R ++   +K  +GI +H   VE G+L     +   
Sbjct: 507 LDRTPFYAEGGGQIGDFGYLEWAGGRARVVTTRKSPQGIHLHQVRVEEGVLEPGRRVRAV 566

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   RR    NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P++  EL+ 
Sbjct: 567 VD-PARRATERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLSLEELER 625

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGG 687
           IE  VN  +  + PV       E+A   GA AL G KY D VRVVSVE         D  
Sbjct: 626 IERLVNRWVQADFPVTWTYKPLEEAKREGAMALFGEKYADVVRVVSVEGSPDVRGILDAP 685

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           V S  LCGG HV  TGEI    I SE ++ AG+RRIEA+TG+ A +   G   + ++LA 
Sbjct: 686 VTSKELCGGCHVRRTGEIGYFVIRSEEALAAGVRRIEALTGEAAVAFARGLLNRTQALAR 745

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------NFMSHII 801
            L  +   V  RV+++ EE +       + K +L    L     A+        +++  +
Sbjct: 746 ELGTTVEAVPERVQKLQEELKARGREIERLKAELARAQLGTGGKAEAREAGGWRYLAAEL 805

Query: 802 SEVDSKELKSVMDAL 816
           S +D   L+   D L
Sbjct: 806 SGLDMNALRRAADEL 820


>gi|189468166|ref|ZP_03016951.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM
           17393]
 gi|189436430|gb|EDV05415.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM
           17393]
          Length = 872

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 346/927 (37%), Positives = 517/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEYLVEVLKI 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAAAFWEQ--HLPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRPEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTAYGKDNQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +LKE+   T+F+GY  
Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKER--TTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D + R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPAHPEAPMMACVDTEKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  EDA   GA AL G KY D VRV+    SVE+          CG
Sbjct: 617 AKIRANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--- 752
           GTHV++TG I ++ IVSESS+ AG+RRIEA TG R    +   ++ LK L +    +   
Sbjct: 667 GTHVAATGNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAPDL 726

Query: 753 QGNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            G +   +EE        E++ + +    K +L  N++++   K+        I + + +
Sbjct: 727 AGTIRKYIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVI------KICAPIPA 780

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865
           + +K++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  
Sbjct: 781 ESIKNIAFQLRGEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +  + AI  V
Sbjct: 840 GGGGGQPHFATAGGKNIDGLNAAIEKV 866


>gi|320449491|ref|YP_004201587.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320149660|gb|ADW21038.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 882

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 345/858 (40%), Positives = 489/858 (56%), Gaps = 67/858 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             + IR  +L FF+  GH  LPS SLIP NDP+L+FT++GM P K  F G  KP+     
Sbjct: 2   RTAEIREKYLSFFEGKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGA-KPIFGGKE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
           ++ +TT QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ LT  
Sbjct: 61  WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTDP 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCG 170
           K   LD  RL++TVY++D+EA+ +W+ + G+  +KI R   ++N+W     +    GP G
Sbjct: 117 KWLGLDPDRLWVTVYEDDDEAYAIWRDLVGVPEEKIGRFGEDENYWPGGAITHGPNGPSG 176

Query: 171 PCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSI 224
           PCSEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +I
Sbjct: 177 PCSEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNI 236

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
           DTGMGL R+A +LQ+  + Y  D F  +I+     +G  YEG   V+HRVI DH+R+   
Sbjct: 237 DTGMGLYRVAAILQDVEDFYRTDTFYPIIERVALFSGKPYEGTASVSHRVIADHIRAVVA 296

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            +ADG+  +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +  
Sbjct: 297 ALADGVTFSNTGRGYVIRRLLRRALRHGYLLGLQEPFLHRLAPVVAELLGDFYPEMRENL 356

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I
Sbjct: 357 PAVEKQIRLEEERFLETLEGGLKRLDTLLSGLRPGEVLPGAEAFRLYDTYGFPLDLTVEI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYD 461
              RG  G+D   F +A+EEQ+ R+RA ++       +K    L+E Y   GAT+F+GY 
Sbjct: 417 AAERGF-GVDTEGFKRAMEEQQERSRA-AMAFEREIFKKSAQVLEELYAERGATEFLGYG 474

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L                            V A++   + +EEA  G +V+VV D+TPFY
Sbjct: 475 TLE-----------------------AEGTVLALLAGDQSLEEAGPGTEVQVVLDRTPFY 511

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GGQ+GD G       R ++    K   GIF+H A VE G LR    +   +D   RR
Sbjct: 512 AEGGGQIGDFGHLEWPSGRARVETTLKTERGIFLHRAKVEEGTLRVGERVRAVVD-PARR 570

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               +H+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+T  EL+ IE  VN 
Sbjct: 571 DTERHHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLTQEELERIELLVNR 630

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVS 700
            I  + PV  R +  E+A   GA AL G KY + VRVV VE     GV S  LCGGTHV 
Sbjct: 631 WILADFPVTWRYLPLEEAKREGAMALFGEKYGEVVRVVRVEGSPLPGVESKELCGGTHVR 690

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TGEI    I  E ++ AG+RR+EA+ G+ A     G   ++++LA  L V + N+  R+
Sbjct: 691 RTGEIGAFLIQKEEAVSAGVRRLEAVAGEWAVRFARGALNRMRALAERLSVGEANLEERL 750

Query: 761 EEIWEEYR---------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
           E + +E +         K +L+ A+ K     ++++  +   + +    +S VD   L+ 
Sbjct: 751 ERLLQELKAKEKEVESLKARLVQAELK-----KEVALSEKGGLRYGVLELSGVDMAALRQ 805

Query: 812 VMDALQKKIQSGIIMLVG 829
             D L  K     ++L G
Sbjct: 806 AADDLVAKGADVALVLSG 823


>gi|218246265|ref|YP_002371636.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|218166743|gb|ACK65480.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 879

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 345/898 (38%), Positives = 523/898 (58%), Gaps = 54/898 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P Y   TT 
Sbjct: 11  AQIRDKFLQFYASKHHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKNPDYPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  +W+L T+ F+L    
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPPEN 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V++ED+EAF++W+   G+   +I R+   DNFW    TGPCGPCSE+++D    + 
Sbjct: 126 IVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + ++ G+ Y+  +    V+ +VI DH+RS   +IADGI  +N  RGYVL
Sbjct: 245 ETDLIFPIIETAAKIAGINYKNTDEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +         S YP + + +  I+  L+ E+ RF +T
Sbjct: 305 RRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFLET 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  +++   K+  ++G  AF LYDT+G PL++ Q+I   +GL  +D+  F  A
Sbjct: 365 LERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFEAA 423

Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++EQ+ R++A   ++ L   G+ +K    L E    T+F+GY                  
Sbjct: 424 MKEQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYS----------------- 462

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                 +  + + V+A++  G+ VE A +G +V+++ DQTPFY E+GGQ+GD G   GD 
Sbjct: 463 ------SPQIIAKVQAVLVAGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDN 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + ++I DV KK  GIFVH   VERG +  E ++  TID   RR++  +H+ATHLL  AL 
Sbjct: 517 LVVRIEDV-KKESGIFVHFGRVERGTIAVENTVTATIDRACRRRVQAHHTATHLLQAALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++   +SQ GS +  D LRFD    + ITSAEL+ IE  +N  IA+       IM+ E 
Sbjct: 576 KVVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEK 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA A+ G KY+  VRV+ V     GV S  LCGGTHV +T EI L  I+SES I +
Sbjct: 636 AKAKGAIAMFGEKYSAEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAK 776
           G+RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q  L   K
Sbjct: 691 GVRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVK 750

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++L +   D    +   V     ++SE   +D K L++  + LQ+K+    ++L  +  E
Sbjct: 751 QELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSE 810

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
            K  VL+    + + +   +   +   ++  + GGGGGGRP++AQ+GG + NK  +A+
Sbjct: 811 DKV-VLVAAFSEKVHKEKQLMAGKFIGEIAKICGGGGGGRPNLAQAGGRDANKLPEAL 867


>gi|57233592|ref|YP_180805.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|83305845|sp|Q3ZAE4|SYA_DEHE1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57224040|gb|AAW39097.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 871

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 351/911 (38%), Positives = 531/911 (58%), Gaps = 55/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T+ QKC R      D+++VG  + H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MTSCQKCFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179
              +L++TVY +D+EA  LWK+  G+   +I+R+   DNFW  A ++GPCGPCSEI +D 
Sbjct: 116 PAEKLWVTVYLDDDEAIALWKE-QGVPEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           G+   C       S + G R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  +
Sbjct: 175 GQEMGCGKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTIL 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q + N Y+ D+F  +I+ + Q++G +Y  +       R++ +H R  +FLIADG++P  
Sbjct: 234 MQFRKNVYETDIFAPVIEKACQLSGRQYGIDAETDKALRIVSEHSRGITFLIADGVIPDK 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRR++RRA+ + R LG  +P ++ +  A+   M   YPEL + +  + E + SE
Sbjct: 294 AGRGYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELNKRQAYVLEMIASE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + RF +TL  GL LL+ ++      +I +G  AFKLYDT+G P+++  +I   RGL+ +D
Sbjct: 354 EARFSETLATGLELLEEIVRQTKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VD 411

Query: 415 IISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLK--EKYGATQFIGYDLLRGSKFMKE 471
           +  F   +E QR++AR+       +  T +   +++  EK   T F+GY+L R       
Sbjct: 412 LGGFEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEK---TCFVGYELTR------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                 QK          S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDT
Sbjct: 462 ------QK----------STIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDT 505

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  I  G R ++ +      G+F+H   V  G L+   +    ID + RR ++ NH+ATH
Sbjct: 506 GEIITGGGRFEVKNTLHLPNGVFLHQGRVISGCLKIAETAAAHIDEERRRDIARNHTATH 565

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG  V Q GS +TP+ LRFD +H KP+T  E++  E+ VND I +NLPV  
Sbjct: 566 ILQTALRQVLGEQVQQRGSVVTPERLRFDFSHLKPMTKDEIRRAEEFVNDKIRRNLPVYA 625

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M    A+  G  AL G KY DRVRV+ V        S+ LCGGTHVS++GEI L  IV
Sbjct: 626 EEMPYRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS+ AG+RRIEA+TG+ A +++  Q + L  L+  L+ +      ++ E+ EE   L+
Sbjct: 683 SESSVGAGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESPRKLAELKEEIDTLK 742

Query: 772 --LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
             + + +R++     +    K  D   +  ++S    V++  L    D L+ K+ SGII+
Sbjct: 743 KTVQNLERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLHETADFLRDKLGSGIIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G   E K   L +VT DL+++ ++A ++ +  +++  GGGGGG+P+MAQ GG +  K 
Sbjct: 803 L-GTVSEDKPFFLCMVTPDLIEKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKAKL 860

Query: 886 DQAIAGVASFL 896
           D+A+  V   L
Sbjct: 861 DEALQAVKGML 871


>gi|56750673|ref|YP_171374.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|56685632|dbj|BAD78854.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 892

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       TT QK
Sbjct: 27  IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 85

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +   RL 
Sbjct: 86  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 141

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185
           ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D   E    
Sbjct: 142 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 201

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           GL    E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   NNY+
Sbjct: 202 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 259

Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +IQA   +    Y  E  ++ V+ +VI DHLR+ + LIADG+  +N GRGYVLR
Sbjct: 260 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 319

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF +TL
Sbjct: 320 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 379

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL   L     D+I  G+ AF LYDT+G PL++ Q+I   +GL  +D+  F  A+
Sbjct: 380 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 436

Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479
             QR R++A   ++ L   T +     L E+   ++F+GY D +  +K            
Sbjct: 437 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPSEFVGYGDAVATAK------------ 481

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 482 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 529

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 530 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 588

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 589 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 648

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V     GV S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 649 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 703

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 704 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 763

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+  +G ++L    +E
Sbjct: 764 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 823

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++      ++ +             + GGGGGGRP++AQ+GG + +K  +AIA   
Sbjct: 824 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 883

Query: 894 SFLK 897
             LK
Sbjct: 884 DQLK 887


>gi|300088455|ref|YP_003758977.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528188|gb|ADJ26656.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 856

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 352/902 (39%), Positives = 517/902 (57%), Gaps = 64/902 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +RT FL++F + GH+++PS+SLIP  DPTL+ T +GMV FK  F G+EKP    +T+ QK
Sbjct: 8   LRTLFLDYFAEKGHKVMPSASLIPHGDPTLLLTTAGMVQFKPYFLGREKPPATRLTSTQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C R      D+D VG  + H TFFEMLGNFS G YFK+ AI LAW+ +T+   L   RL+
Sbjct: 68  CFRT----TDIDAVGDAS-HLTFFEMLGNFSVGDYFKKEAIDLAWEFVTERLGLPMERLW 122

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPG 185
           +TV+ +D+EA + W+   GL A++I+R+   DNFW  A ++GPCGPCSEI +D GE    
Sbjct: 123 VTVFLDDDEAIRFWRD-KGLPAERIVRLGEKDNFWGPAGDSGPCGPCSEIHYDFGEAAGC 181

Query: 186 GLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           G P  G +    R+ EIWNLVFMQF Q     R  LP+ +IDTGMGLER++ ++Q   + 
Sbjct: 182 GKPDCGPACSCGRFCEIWNLVFMQFNQDTAGTRTPLPRPNIDTGMGLERLSAIMQGVPSV 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           Y  D F +L+    +V+G +Y  +   +   R++ +H R  +FLIADG++P+NE RGYVL
Sbjct: 242 YQTDRFDYLLDRVAEVSGREYGRDAETDRAMRIVAEHSRGITFLIADGVIPSNESRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR   + R+LG  +P M+ L+ A+   M  AYPEL   +  I E +  E+ RF +T
Sbjct: 302 RRLLRRTALFGRMLGLDQPFMVPLVEAVIERMSPAYPELTGRREFIIELVAREESRFAET 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L  G+ LL+ +++  G+  ++ G+ AF+LYDT+G PLD+  +I   +G  G+D   F++ 
Sbjct: 362 LLTGMQLLEDMMAGAGEGRMITGEQAFRLYDTYGFPLDLTMEIASGKGF-GVDEAGFDRE 420

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  QR +ARA   G   GT + +   L   +  T F GYD              L Q   
Sbjct: 421 MGRQREKARA---GARFGTDKAV--PLDHTFQHTCFTGYD-------------TLSQYGT 462

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIR 540
           ID       I++   Q   I E    G+   +V D+T FYAE GGQ GD G    GD + 
Sbjct: 463 ID------GIIRNNAQTDVISE----GEHGGLVLDKTAFYAEMGGQAGDIGRITAGDSV- 511

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++T     + G+ +H   V RG  R     +  +D   R   + NH+ATHLL  AL  +
Sbjct: 512 FEVTGTVLLSPGVTIHQGYVARGAFRIGDEALTAVDPTTRYDTARNHTATHLLQAALIEV 571

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H+ Q GS + PD LRFD +H K +T  EL  +E  VN+ I +N PV        DA+
Sbjct: 572 LGEHIQQRGSVVAPDRLRFDFSHLKAVTPEELIRVEAIVNERIRENHPVTAAETGYRDAL 631

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SG  AL G KY + VRV+S+   D  V S+ LCGGTH+ +TGEI    I+SESS+ AG+
Sbjct: 632 KSGVTALFGEKYGETVRVLSIG-SDRRV-SAELCGGTHIRATGEIGYFKIISESSVGAGL 689

Query: 721 RRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           RRIEA+TG+ A + L  Q     EKL+ L + L   + +      E+  + R L L    
Sbjct: 690 RRIEAVTGRGAEAWLSEQFTNSREKLERLQTELDDERRSAAELKRELARQ-RALSLTAGA 748

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           R       D+   K+  V      + + D + L+ + D L+ ++ S +I+L  +  +K  
Sbjct: 749 R-------DIDGGKLLAVE-----VPDTDMETLRDMADELRGRLGSAVIVLASVQGDKPV 796

Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             L  VT+DL+ R ++A ++ +  +++  GGGGGG+PH+AQ GG + ++  +A+A V  F
Sbjct: 797 -FLAAVTDDLVARGYHAGNIIKRLSQI-AGGGGGGKPHLAQGGGRDKSRLAEALAAVNEF 854

Query: 896 LK 897
           ++
Sbjct: 855 IR 856


>gi|298243740|ref|ZP_06967547.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297556794|gb|EFH90658.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 880

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 344/914 (37%), Positives = 510/914 (55%), Gaps = 66/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F   GH  +PSSSL+P NDPT+M T +GM      F G+E P    +T+ 
Sbjct: 10  TEIRARFLDYFASKGHVKVPSSSLVPRNDPTVMLTTAGMQQMIPYFLGRETPPGSRLTSS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC R      D+D VG   R  TFFEMLGNFS G YFK  AI  AW+ LT+   L  +R
Sbjct: 70  QKCFRT----TDIDIVG-NERTLTFFEMLGNFSVGDYFKREAITFAWEFLTQVIKLPAQR 124

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG--- 180
           L+ TV+ ED+EA + W +I+G   + I+R+   DN+W     +GPCGP SEI++D+G   
Sbjct: 125 LHPTVHPEDDEAPRYWNEIAGYPDEAIVRL--EDNWWGPPGASGPCGPDSEIYYDRGVEH 182

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                +C PG       + ER++EIWNLVFMQF Q     R  LPK +IDTGMGLER++ 
Sbjct: 183 GCGRADCKPGC------DCERFLEIWNLVFMQFFQDRDGGRTPLPKTNIDTGMGLERLSM 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293
           V+Q K + +D D+F+ +I    Q+TG  Y     V+   RVI DH R+  FL ADG+LP+
Sbjct: 237 VVQGKESVFDTDIFRAIIDHFAQLTGKTYGQETRVDTSLRVIADHARALVFLAADGVLPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGY+ RR++RRA+ + +LLG  +P +      +   MG  Y EL   +  I + L  
Sbjct: 297 NEGRGYIFRRVLRRAVRHGKLLGLDQPFLSIAADTVIKLMGDYYTELRTQRDRIVDVLSL 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+++F +TL+ GL LL  +LS L + EI  + G   FKLYD+HG P+++ Q+I   +G  
Sbjct: 357 EEKKFSQTLNTGLQLLTSLLSDLRQKEISVIPGTEVFKLYDSHGFPVELTQEIASEQGFT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+++Q+ R+RA S        E     + ++ G T+F GY  + G+     
Sbjct: 417 -IDAAGFEQAMQQQQERSRAAS-NFAQADHETNLDEVLQRIGPTKFTGYQGIAGT----- 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+   G  VE   + Q+   + D TPFYAE+GGQ+GD 
Sbjct: 470 ------------------GKVVALFVDGREVESISAPQQALAILDATPFYAESGGQIGDR 511

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +      ++ D ++  +G++VH+  +  G LR   S+   +  Q R     NHSATH
Sbjct: 512 GDLLAQAGVFKVQDTRRPVKGLYVHYGEIAEGYLRVGDSVQAEVISQRREDTMRNHSATH 571

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+ V Q GS + P+ LRFD +  + +T+ EL  I+  VN  I  + PV T
Sbjct: 572 LLHKALRDLLGTQVEQRGSLVEPERLRFDFSSQRGLTTDELAQIDAQVNRWIRADYPVDT 631

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  ++A+A+GA AL G KY+D VRVVS+        S+ LCGGTH +STG+I L   V
Sbjct: 632 TIMPIQEALATGAMALFGEKYDDLVRVVSMG------SSTELCGGTHCASTGQIGLYLTV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
            E+S+ AGIRRIEA+TG+ A ++L  +   + SLA+ L+V    +  RVE++  E   L 
Sbjct: 686 QETSVAAGIRRIEALTGRAAEAYLRRRSALVDSLAARLQVQTDTLEARVEQMQHELSTLR 745

Query: 771 ----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               Q +      Q+    L   +++ V  ++  +   D K L+ + + ++ K++   ++
Sbjct: 746 KQVAQFMRENAVRQVETLVLQGQELSGVTIIATSVDVPDDKVLREMGEMMRSKLKQPHVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNK 884
           ++    E++ ++ + V   L  R   +   +++A V    GG GGGRP +AQ GG N  +
Sbjct: 806 VLAAPLEERIALQVNVEPSLTKR--GLHAGKIAAAVGQKLGGKGGGRPDVAQGGGKNKAE 863

Query: 885 ADQAIAGVASFLKK 898
              A+  V  F+++
Sbjct: 864 LGAALDLVTQFVRE 877


>gi|154148426|ref|YP_001406547.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|205830014|sp|A7I206|SYA_CAMHC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|153804435|gb|ABS51442.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 845

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 360/890 (40%), Positives = 525/890 (58%), Gaps = 65/890 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FF   GHE++ S+ L+P +D +L+FTN+GMVPFKNIFTG   +P     T+ Q
Sbjct: 3   IRKEFLDFFASKGHEIIASAPLVP-DDASLLFTNAGMVPFKNIFTGAVPRPTPPIRTSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   LD+ +L
Sbjct: 62  TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKENAIAYAWEFITEILKLDKDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           Y+TV+++D+EAF++W K   ++ ++I R   +DNFW+M +TGPCGPCSEIF+DQGE    
Sbjct: 122 YVTVHEKDDEAFEIWAK--HIAKERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEYFH 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQFE+        LPK SIDTGMGLER+  + +   +NY
Sbjct: 180 GKEDYMGGDGDRFLEIWNLVFMQFERDKAGNLSPLPKPSIDTGMGLERVTAIKEGVFSNY 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  +F  LI A E++ G  Y+  +  ++RVI DH+RS +FLIA G+    EGRGYVLRRI
Sbjct: 240 DSSIFMPLIHAVEKLCGKPYKYESGASYRVIADHIRSITFLIAQGVNFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG  EP M  L+  +C  MG  Y  L++ K  I+E ++ E+ERF  T+  
Sbjct: 300 LRRALRHGYLLGLKEPFMYKLVDNVCELMGHHYSYLLEKKETIKEIIKLEEERFLSTISA 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           GL L    L++    ++ +G++AFKLYDT+G PLD+  D+L   G   +D   F++ + E
Sbjct: 360 GLELFKAQLANT--KDVFSGEIAFKLYDTYGFPLDLTADMLREIG-KKVDEKKFDELMNE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           Q++RA+A   G G    EK  F +L EK+G  +FIGY+       MK   K+L       
Sbjct: 417 QKARAKASWKGSGDKIKEKGDFKALLEKFGENKFIGYET------MKSQSKILAI----- 465

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
           L N   +           V+E  +G    ++ D+TPFYA++GGQ+ DTG   G     ++
Sbjct: 466 LNNDFRN-----------VDELKAGNIGWIMLDETPFYAQSGGQIYDTGLINGSN---KV 511

Query: 544 TDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           TD QK     F ++ + VE         +V     + R + + +HSATHLLH AL  ILG
Sbjct: 512 TDTQK----FFGLNLSEVETSTNLKVGDIVKCEVDEARIETARHHSATHLLHLALREILG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           S V Q GS +  + LRFD T+ K +TS +L  IE+NVN  I++     T IM+  +AI S
Sbjct: 568 SGVGQAGSSVDSERLRFDFTYPKSLTSEQLLKIENNVNSQISKGGASKTEIMDINEAIKS 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY D+VRV+++        S   CGGTHV +  EI   YIV ES + AG+RR
Sbjct: 628 GAIAMFSEKYGDKVRVLTLG------ESKEFCGGTHVRNLWEIGSFYIVKESGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A ++      +   + + LK ++   +  ++++ +E          + L+  
Sbjct: 682 IEAVCSKAAINYAKNFRSEFSEVQNALKSNEA--LSAIKKLKDEI---------KSLKNE 730

Query: 783 VEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           +   S  K+ D+   N +  ++SE D  ++K+ +D L+ +    I+ +    ++ +  + 
Sbjct: 731 ISKASAAKVIDLDEKNGIKFVVSEFDG-DIKTKIDELKNE-NDKIVAVFFKVEDGRVQIA 788

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             V    L    A ++ +  AK+L GGGGGGR   A +GG +  K D+A+
Sbjct: 789 AGVKNAPL---KAGEIVKQIAKIL-GGGGGGRDDFATAGGKDMTKIDEAV 834


>gi|313904037|ref|ZP_07837417.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313471186|gb|EFR66508.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 897

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 345/915 (37%), Positives = 522/915 (57%), Gaps = 65/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL +F++     L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 9   VNELREMFLSYFEEKECLRLGSFSLVPHNDNSLLIINSGMAPMKPWFTGQEIPPRKRVTT 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    DL+NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ LT+   LD  
Sbjct: 69  CQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFLTERVGLDAD 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG--- 180
           RLY +VY +DEE++ +W     + A++I +    DNFW    +GPCGPC+EI++D+G   
Sbjct: 125 RLYPSVYVDDEESYNIWLNDMHIPAERIYKFGKEDNFWEHG-SGPCGPCTEIYYDRGPQF 183

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               E + GG      EG+R++E+WN+VF QF    K     L + +IDTGMGLER+A  
Sbjct: 184 GNGPEDVMGG------EGDRFMEVWNVVFSQFNNDGKGNYTDLVQKNIDTGMGLERLAVA 237

Query: 237 LQEKTNNYDIDLFKHLIQ-ASEQVTGMKYEGNNI----VNHRVIVDHLRSSSFLIADGIL 291
           +QE  + +D+D  K L     E   G+KYE        V+ R++ DH R+ +F+I+DGI+
Sbjct: 238 VQEVGSLFDVDTVKALRDLICELAGGVKYEQPGTEESDVSVRIVTDHARAMTFMISDGIM 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N GRGYVLRRI+RRA+ + R LG T   +  L   +       YPEL + +  I   +
Sbjct: 298 PSNNGRGYVLRRIIRRAVRHGRKLGITGSFLTKLAENVIEGSKDGYPELAEKRDFILNVI 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++E+++F KT ++G+ +L  +   L   GK E L+G  AFKLYDT+G PLD  ++IL   
Sbjct: 358 QAEEDKFEKTYEQGMDILQSMQDALKAEGKKE-LSGPDAFKLYDTYGFPLDNTKEILEEN 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-----GTTEKIWFSLKEKYGATQFIGYDLL 463
           G A +D+  F  A++ QR  AR      G      G    ++  +     +  F+GY  L
Sbjct: 417 GFA-VDVAGFEAAMKNQRETAREDRKKSGKSATYMGAAATVYEDMDPAVNSA-FVGYQGL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             +       K++         +   S+ +A+            GQ   V+ DQTPFY  
Sbjct: 475 EATG------KIVALAAFAADDDEDDSVAEALS----------DGQSGAVITDQTPFYGT 518

Query: 524 AGGQLGDTGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+GD G   +GDG    +++  +  A     H   V +G+L+T   + L +D +NR 
Sbjct: 519 MGGQIGDKGVIVLGDGEAVFEVSATEHVAGNKIAHIGKVVKGMLKTGDEVSLKVDAKNRL 578

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++ NHSATHL+  AL  +LG+HV Q GS    D  RFD +H + +TS E++ +ED VN+
Sbjct: 579 AIARNHSATHLMQKALREVLGTHVEQAGSYQDADRTRFDFSHFQAMTSEEIRKVEDMVNE 638

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I++ L V T++M  ++A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +
Sbjct: 639 KISEGLAVTTQVMTLDEAKKTGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHVEN 693

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I    I+SE+ + AG+RRIEA+TG   R +    + +  + A+ LK +   +   + 
Sbjct: 694 TQQIAQFKILSENGVAAGVRRIEALTGDNVRRYYEKLEAQTNAAAALLKATPATLADHIR 753

Query: 762 EIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDAL 816
           ++ EE + L+  +   K K   N      + I ++N   F++  +S VD  EL+++ D L
Sbjct: 754 KLQEELKALKSENEALKSKEAQNALGDVMNNIKEINGVPFLATAVSGVDMNELRNLGDEL 813

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           + K+  G+++LV    + K +++ + T++ + +  +A ++ + SAK++ GGGGGGRP+MA
Sbjct: 814 KAKVAGGVVLLVS-DNDGKVNMMCMATDEAMKKGAHAGNIIKASAKIV-GGGGGGRPNMA 871

Query: 876 QSGGPNGNKADQAIA 890
           Q+GG + +    AIA
Sbjct: 872 QAGGKDASGIPAAIA 886


>gi|147668699|ref|YP_001213517.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|205830043|sp|A5FSU1|SYA_DEHSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146269647|gb|ABQ16639.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 871

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 344/909 (37%), Positives = 529/909 (58%), Gaps = 51/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + + QKC R      D+++VG  + H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MASCQKCFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179
              RL+ITVY +D+EA  LWK+  G+  ++I+R+   DNFW  A ++GPCGPCSEI +D 
Sbjct: 116 PAERLWITVYLDDDEAIALWKE-QGVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           G+   C       S + G R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  +
Sbjct: 175 GQETGCGKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTIL 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294
           +Q K N Y+ D+F  +++ +  ++G KY  +   +   R++ +H R  +FLIADG++P  
Sbjct: 234 MQSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDK 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRR++RRA+ + R LG   P ++ +  A+   M   YPEL + +  + E + SE
Sbjct: 294 AGRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + RF +TL  GL LL+ ++    K   ++G  AFKLYDT+G P+++  +I   +GL+ +D
Sbjct: 354 EARFSETLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VD 411

Query: 415 IISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +  F   +E QR++AR+       +  T +   +++     T F+GY+L           
Sbjct: 412 LDGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAE-KTCFVGYELA---------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
               QK          S +K I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG 
Sbjct: 461 ---IQK----------STIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGE 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            I D  R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L
Sbjct: 508 IITDAGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHIL 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    
Sbjct: 568 QTALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEE 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M    A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SE
Sbjct: 628 MPYRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           SS+ AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+  
Sbjct: 685 SSVGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKA 744

Query: 772 LIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           + + +R++     +    K  D   V  +   ++ V++  L+   D L+ K+ SG+I+L 
Sbjct: 745 VQNLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL- 803

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G   E K   L +VT DL+ + ++A ++ +  +++  GGGGGG+P+MAQ GG + +K D+
Sbjct: 804 GTVTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKSKLDE 862

Query: 888 AIAGVASFL 896
           A+  V   +
Sbjct: 863 ALQAVKGMI 871


>gi|291087654|ref|ZP_06347045.2| alanine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074356|gb|EFE11720.1| alanine--tRNA ligase [Clostridium sp. M62/1]
          Length = 868

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 345/900 (38%), Positives = 516/900 (57%), Gaps = 55/900 (6%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R 
Sbjct: 2   FLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +VY
Sbjct: 62  G----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSVY 117

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
            +D+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE    G PG 
Sbjct: 118 QDDDEAFDIWNKEMGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPGC 176

Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
           +   + +RYIE+WN VF QF+         L   +IDTGMGLER+A ++Q+  + + ID 
Sbjct: 177 TVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVIVQDVDSLFTIDT 236

Query: 249 FKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
            K L+     + G +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGYVLRR++R
Sbjct: 237 NKALLDRVCALAGKEYQKDHETDVSLRIVTDHIKSCTFMISDGIMPSNEGRGYVLRRLLR 296

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RA  + R LG     +  L   +       YPEL + K +I + L  E+++F KT+D+GL
Sbjct: 297 RAARHGRKLGIEGKFLAELSRTVIELSKDGYPELDEKKAMIFKVLTEEEDKFNKTIDQGL 356

Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
            +L+ + S + K  +++L+G+ AFKLYDT+G P+D+ ++IL  R L+ +D   F   +++
Sbjct: 357 SILNEMESEMAKKGEKVLSGENAFKLYDTYGFPVDLTKEILEERDLS-VDEEGFAACMKK 415

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           Q+  ARA          +   +   +    T+F+GYD L                     
Sbjct: 416 QKDAARAARKTTNYMGADVTVYQSIDPAVTTEFVGYDRLVHE------------------ 457

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                S +  +  + E+VE    GQ   ++  +TPFYA  GGQ  D G    +    ++ 
Sbjct: 458 -----SEITVLTTEDELVEALTDGQNGTIIVKETPFYATMGGQQADIGVISTENGTFEVK 512

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           D  K   G   H   V +G+ +    + LT++ +NR   + NHSATHLLH AL T+LG+H
Sbjct: 513 DTIKLQGGKVGHVGTVTKGMFKVGDQVTLTVNKENRELTARNHSATHLLHKALRTVLGTH 572

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q GS +T D LRFD TH   +T  E+ ++E  VND IA +LPVVT IM+ E+A  +GA
Sbjct: 573 VEQAGSLVTKDRLRFDFTHFSAMTPDEIAAVEKMVNDEIAASLPVVTDIMSLEEAKKTGA 632

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL G KY + VRVV +     G  S+ LCGGTHV +T  I    IVSE+ I AG+RRIE
Sbjct: 633 MALFGEKYGESVRVVRM-----GDFSTELCGGTHVPNTSTISAFKIVSEAGIAAGVRRIE 687

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+T      +    +++L   A  +K +   +  +++ + +E + L   + K K +L  +
Sbjct: 688 ALTSTGLMDYYHEMEQELHEAAKLVKSTPAALHDKLQAMLDELKALHSENEKLKSRLAND 747

Query: 785 DL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            L        +I  V  ++  +  VD   L+++ D L++K+  G++++  + ++ K +++
Sbjct: 748 SLGDVLNQVKEINGVKLLAVRVDGVDMNGLRNLGDQLKEKLGEGMVVIASV-QDGKVNLM 806

Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              TE    +  +A +L +  A ++ GGGGGGRP+MAQ+GG N        AGV   L+K
Sbjct: 807 ASATEGAQKKGAHAGNLIKAIASLV-GGGGGGRPNMAQAGGKNP-------AGVEDALRK 858


>gi|194337650|ref|YP_002019444.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310127|gb|ACF44827.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 888

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 350/917 (38%), Positives = 513/917 (55%), Gaps = 98/917 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL++F +  H ++ S+ +IP +DPTL+FTN+GM  FK++F G+    Y      QK
Sbjct: 6   IRQSFLDYFAQKAHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRAADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L + RLY
Sbjct: 66  CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKQEAITWAWELLTDVWKLPKERLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TVY +D+E+F++WK  + ++ D IIR    DNFW M ETGPCGPCSEI  D  E   G 
Sbjct: 126 ATVYQDDDESFQIWKTATDINPDHIIRFGEKDNFWEMGETGPCGPCSEIHIDLTE--DGS 183

Query: 187 LPGSSEEGE-RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                  G+ R IE+WNLVF+Q+ +Q+      LP   +DTGMG ER+A VLQ K +NYD
Sbjct: 184 GHSLVNVGDYRVIELWNLVFIQYNRQSDGSLEPLPMKHVDTGMGFERVAAVLQGKGSNYD 243

Query: 246 IDLFKHLIQASEQVTGMKYEGNNI-----VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            D+F+ L     ++TG++Y G ++     +  RVI DH R+ +F ++DG +P+NEGRGYV
Sbjct: 244 SDVFQPLFDRITEITGVRY-GASMDDPLDIAMRVIADHARTLTFALSDGAMPSNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ Y++ LGY EP++  L+  L   MG  +PEL + +  + + +R+E+E F  
Sbjct: 303 LRRILRRALRYSKNLGYNEPILHQLVGTLAASMGDVFPELRKQQETVSKIIRAEEESFIV 362

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLDRG+ + + V+  +       + G+ AFKLYDT+G P D+ + +    G + +D   F
Sbjct: 363 TLDRGIEIFNEVIEQVRSANSTTITGEDAFKLYDTYGFPFDLTRLMASDVGFS-VDGEGF 421

Query: 419 NQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
              +++Q++RAR        +    ++ +WFS   +   ++F GYD L            
Sbjct: 422 EHCMQQQKTRARTDRKEKHQVQDDGSQWLWFSDVHR---SEFAGYDQL------------ 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
              + P+ L  G+  +      QG+++          +V D+TPFYAE+GGQ+GD G   
Sbjct: 467 ---EMPV-LITGIKHL------QGKLL----------LVLDRTPFYAESGGQVGDRGWIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVER--GILRT------------EMSLVLTIDYQNRR 581
               RLQ++D  K  + I   H + E    IL T            E+S   ++D   R+
Sbjct: 507 SATYRLQVSDTIKDGDAIV--HLVTEAFDKILDTPISVDDLQLDEKELSAEASVDRHLRQ 564

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               NH+ATHL+H AL  ILG HV Q GS +  + LRFD +H   +T AE++++E +VND
Sbjct: 565 DTECNHTATHLMHSALRRILGQHVQQKGSYVNAERLRFDFSHFSRMTEAEIEAVEADVND 624

Query: 642 IIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I +  PV     +  +DAIA GA A  G KY DRVRV+ +     G+ S  LCGGTH  
Sbjct: 625 HIRRAEPVQKHADVLYDDAIAMGALAFFGDKYADRVRVIEIP----GI-SVELCGGTHAD 679

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           + G I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK      V  +
Sbjct: 680 NIGRIGLFKIVSESSVASGVRRIEALTGKAAEKLLWKEYHELQQVRHLLKAKGDEPV--L 737

Query: 761 EEIWEEYRKLQLIHAKRKLQ--------------LNVEDLSCHKIADVNFMSHIISEVDS 806
           E+I      + L+ AK++L+              L  E  +   I+    M+ ++ EVD 
Sbjct: 738 EKI------VALMDAKKELEKELSGSRVGSLVTSLTAELDASPDISGCRVMTKVLEEVDG 791

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLG 864
             L+    AL+ +  S   +L  +   K A  L+    D   R   +D  +L   A    
Sbjct: 792 DTLRQAALALRDQATSVAGLLCSVEDGKIA--LVSFASDKAVREFGIDAGKLIREAAQCV 849

Query: 865 GGGGGGRPHMAQSGGPN 881
            GGGGG+P  A +GG N
Sbjct: 850 HGGGGGKPEFATAGGKN 866


>gi|205371826|sp|Q5N4B5|SYA_SYNP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       TT QK
Sbjct: 11  IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +   RL 
Sbjct: 70  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185
           ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D   E    
Sbjct: 126 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 185

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           GL    E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   NNY+
Sbjct: 186 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 243

Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +IQA   +    Y  E  ++ V+ +VI DHLR+ + LIADG+  +N GRGYVLR
Sbjct: 244 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF +TL
Sbjct: 304 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 363

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL   L     D+I  G+ AF LYDT+G PL++ Q+I   +GL  +D+  F  A+
Sbjct: 364 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 420

Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479
             QR R++A   ++ L   T +     L E+   ++F+GY D +  +K            
Sbjct: 421 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPSEFVGYGDAVATAK------------ 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 466 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 514 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V     GV S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+  +G ++L    +E
Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++      ++ +             + GGGGGGRP++AQ+GG + +K  +AIA   
Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 867

Query: 894 SFLK 897
             LK
Sbjct: 868 DQLK 871


>gi|317495192|ref|ZP_07953562.1| alanyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914614|gb|EFV36090.1| alanyl-tRNA synthetase [Gemella moribillum M424]
          Length = 863

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 340/908 (37%), Positives = 524/908 (57%), Gaps = 82/908 (9%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           +L+FF + GH++ PS+SL+P +DP+L++ NSG+   K  F G+E P    +T  QK +R 
Sbjct: 2   YLDFFVEKGHKIEPSASLVPVDDPSLLWINSGVATLKKYFDGREIPENPRITNSQKSIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYIT 128
               ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E    L++ +L +T
Sbjct: 62  ----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAIAWAWEFLTSEKWLALEKEKLSVT 117

Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-------- 180
           V+ ED EA+ +W+ + GL  D+IIRI    NFW + E GP GP +EIF+D+G        
Sbjct: 118 VHPEDTEAYDIWRNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGPEADTWSP 174

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E  PGG      E +RY+E+WN+VF Q+          LP  +IDTGMGLER+ +VLQ
Sbjct: 175 KEEMYPGG------ENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLERIVSVLQ 228

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +   N+D DLF  +I+  E+++G KY       V  +VI DH+R+ +F IADG LP+NEG
Sbjct: 229 DVPTNFDTDLFIPIIREIEKLSGAKYGVSKEQDVAFKVIADHIRTVTFAIADGALPSNEG 288

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGY+LRR++RRA+ +A++LG     M  L   +   M   YP + ++   +++ +  E++
Sbjct: 289 RGYILRRLLRRAVRFAKILGLNSSFMYKLTDIVAEIMIDYYPNVKESVSFVKDVILKEED 348

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  G  +L  + + + KD  ++++G+ AFKLYDT G P+++ ++     GL  +D
Sbjct: 349 RFHETLHEGEAILTNIANEV-KDTTKVISGEDAFKLYDTFGFPIELTEEYAEELGLT-VD 406

Query: 415 IISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           I  FN+ +E+Q+ RARA      S+ + S    +I        G ++F+GY     ++ +
Sbjct: 407 IDGFNEEMEKQKERARASRHDDSSMQVQSDLYNRI-------IGDSEFVGY-----TQLI 454

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           ++  K+L                 AIV ++  ++++      V+VVF++TPFYAE+GGQ+
Sbjct: 455 EKSSKLL-----------------AIVDKEDNLLDKYTGADVVKVVFERTPFYAESGGQV 497

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I  G + ++ DV+K  +   +H   V  G L       L ++   R  +  NH+
Sbjct: 498 ADCGEIIALGFKGEVLDVKKLPDKRHIHFVKVVEGELLVGNEYGLVVNRNYRLNIEKNHT 557

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL+ AL   +G+H+ Q GS +T D LRFD+TH  P+T  E++ +E  VN+ I   L 
Sbjct: 558 ATHLLNEALRQQVGTHIKQAGSLVTDDKLRFDITHFAPLTKEEIERVEQEVNEQIWNALE 617

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T  M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH +++ E+ + 
Sbjct: 618 IKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSSEVGIF 672

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES + AG+RRIEA+TG+ A  +L  Q++ L S+    K +  NV+ +V  +  E +
Sbjct: 673 KIISESGVAAGVRRIEALTGRAAYEYLRSQEDTLSSVEKLTKSNSTNVIEKVSSLQVEIK 732

Query: 769 KLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQ 821
           K  L   K  LQ  + +       + I +VN +S + S V+S+    LK ++D  + K++
Sbjct: 733 K--LTKEKEILQQKIANAELNNLVNDIKEVNGVSVLTSVVESENMNHLKQLVDNAKSKLE 790

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + +I    I+ E K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G  N
Sbjct: 791 NYVIAFASIN-EDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKN 848

Query: 882 GNKADQAI 889
               ++A 
Sbjct: 849 KENINKAF 856


>gi|269798241|ref|YP_003312141.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094870|gb|ACZ24861.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 871

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 341/908 (37%), Positives = 504/908 (55%), Gaps = 59/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P  + +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+ Y  + N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 KTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++EQR RAR                 +KE               +K    D   L
Sbjct: 414 GFEAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
             +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G
Sbjct: 446 KDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ 
Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEVLVNEEILKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I
Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++   +L  
Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLAEAKETAKELEQ 740

Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830
            ++++              + DV F++  +      EL+ + D  L K   SG++++  +
Sbjct: 741 IRKEVSAAGAADIIAGKVVVGDVEFVAAAVKASSIDELRDLADMGLDKMNGSGVVLVGAV 800

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K  +A+
Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEAL 859

Query: 890 AGVASFLK 897
                 LK
Sbjct: 860 KAGGEALK 867


>gi|257452890|ref|ZP_05618189.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317059432|ref|ZP_07923917.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313685108|gb|EFS21943.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 866

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 337/908 (37%), Positives = 519/908 (57%), Gaps = 62/908 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  +W+ +T+   L + +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKREAIVWSWEFVTEVLGLPKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEDCHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLGPEY- 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++Q K
Sbjct: 179 GGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +NN++ DL   L++ + ++T  KY  +     + +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 SNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+E+F
Sbjct: 299 YVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  +      GK   L+G++ FK+YDT+G P ++ ++I   RG+A +  
Sbjct: 359 SNTLDQGIQLVNEQIEMALQAGKSS-LDGEITFKMYDTYGFPYELTEEICNERGIA-VSQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +K+G T+F GY         +E  K+
Sbjct: 417 EEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHS------TEEKAKL 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  +   D T                         + ++FD+TPFY E+GGQ+GD G   
Sbjct: 471 LNIRQKEDGT-------------------------LLLIFDKTPFYGESGGQVGDHGSIS 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  + ++ DV+K+ E IF H   V  G         LT+D + R  +S NH+ATHLLH 
Sbjct: 506 SEAFQGKVLDVKKQKE-IFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS +  + LRFD +H + +T  +++ +E+ VN+ I++ + V      
Sbjct: 565 ALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSHKT 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A A GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE  
Sbjct: 625 MEEAKACGAMMLFGDKYGDVVRVVHVP-----GFSTELCGGIHVENIGHIGLFKIVSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLI 773
           I AG+RRIEA TG  A   +      LK  A  LK     ++ +VE++ +E ++   ++ 
Sbjct: 680 IAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKAREIT 739

Query: 774 HAKRKL-QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+ +   E L  H  +IADV        +    +L+ ++D ++ K ++ I++L   
Sbjct: 740 SLKDKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S  +K S  + V++ L  ++ A +L +++A++  GG GGG+P  AQ+GG + +K ++A+ 
Sbjct: 798 STFEKLSFAVGVSKALTGKYKAGNLVKIAAEIT-GGKGGGKPDFAQAGGKDKSKIEEAME 856

Query: 891 GVASFLKK 898
            +   +K+
Sbjct: 857 AIKKAIKE 864


>gi|320109036|ref|YP_004184626.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927557|gb|ADV84632.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 889

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 92/921 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FF+   H  + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y    T 
Sbjct: 7   SQIREDFLRFFETKEHRRVHSSSLVPHNDPTLLFTNAGMNQFKDVFLGAEKRSYVRAATS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F +D+
Sbjct: 67  QKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIAYAWELLTAAEWFGIDK 126

Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +LY+T+++       D+EA + W + +G+  ++I  ++  DNFW M ETGPCGPCSEI+
Sbjct: 127 SKLYVTIFEGDAQVPRDDEAEQFWIE-AGVPKERIFEMSAKDNFWQMGETGPCGPCSEIY 185

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTG 227
           +D G       PG+ +    + +RY+EIWNLVFMQF++         +   LPK SIDTG
Sbjct: 186 YDLG-LEAADEPGTDKPFPLDEQRYVEIWNLVFMQFDRMIDAATGGAQLTPLPKPSIDTG 244

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER+A VLQ  T+N++ DLF  LI  + +++G     ++ +  ++I DH R+++FLI+
Sbjct: 245 MGLERIAAVLQGVTSNFETDLFTPLIAKAAELSGATDLTSSSL--KIIADHARAATFLIS 302

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG++P NEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EM  AYPELI +   +
Sbjct: 303 DGVIPLNEGRGYVLRKILRRGIRHGRLLGQEQPFMHEMVYAVRDEMQVAYPELIDSAERV 362

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + + +E+++F +TL  G       LS +  + + +G  AF+LY+T G+PLD M D    
Sbjct: 363 AKVVLAEEQQFARTLQLG-------LSQMTNETLSSGAAAFRLYETFGMPLDFMTDAARD 415

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+   D+  F  A EE++ RARA   G GS  +    F    +   T F+GY  LR   
Sbjct: 416 AGIE-FDLPGFEAAKEEEQQRARASWRG-GSQKSASPAF---RELAKTDFLGYGGLR--- 467

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                             +GV+  V A+V+ G  V+    G + EVV D T FYA++GGQ
Sbjct: 468 -----------------ADGVT--VLALVKDGVGVQALHPGDEGEVVLDATSFYADSGGQ 508

Query: 528 LGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           +GD G        G   ++    K  +G+F H  +V+R I   +  L   ++ + R    
Sbjct: 509 VGDVGWLYPTDHTGALAEVKGCTKPVQGVFAHKVVVKRDISVGD-RLDAVVNGEVRSATI 567

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ THLLH AL  +LG+HV Q GS +    LRFD +H   I   +L+ IED VN  + 
Sbjct: 568 RNHTGTHLLHAALREVLGTHVKQAGSLVNSARLRFDFSHFAGIAPEDLQEIEDIVNAQVL 627

Query: 645 QNLPVVTRIMNREDAIAS------GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N    TR+   ED           A AL G KY D+VRVV +     G  S+ LCGG H
Sbjct: 628 GN----TRVETFEDVPIDVAVHEFKATALFGEKYGDKVRVVKI-----GDFSTELCGGIH 678

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
             +TGEI LL +V ESS  +GIRR+EA+TG  +      +D  +  +A+  +V  G+ + 
Sbjct: 679 TKATGEIGLLKLVGESSAASGIRRVEAVTGTGSLKEFR-RDFDVARVAT--QVIGGSSLP 735

Query: 759 RVEEIW-------EEYRKL--QLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDS 806
             E +        EE +KL  +L  A+ K   +    +     ++  +  ++  +S +D 
Sbjct: 736 PAEALQQKLSAQDEELKKLRRELDQARMKSASSATANAAESAVEVKGIKVLAQRVSGLDR 795

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGG 865
            +++ ++D L+ +I  G+++L   +++ K +++  VT+DL  +  A   +  L+AKV   
Sbjct: 796 NQMRQLVDNLRTQIGEGVVVLGMATEDGKVALIAGVTKDLTSKVQAGKVVGALAAKVG-- 853

Query: 866 GGGGGRPHMAQSGGPNGNKAD 886
           G GGGRP +A++GG + ++ D
Sbjct: 854 GKGGGRPDLAEAGGSDPSQLD 874


>gi|313885025|ref|ZP_07818777.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619716|gb|EFR31153.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 883

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 345/902 (38%), Positives = 513/902 (56%), Gaps = 70/902 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF +  H++ PS+SLIP NDPTL++ NSG+   K  F G E P    +T  
Sbjct: 7   AQIRQMYLDFFAEKNHDVKPSASLIPINDPTLLWINSGVATLKKYFDGTEVPANPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QKC+R     ND++NVG T RHHT FEMLGN+S G YFKE AI  AW+ LT  K    + 
Sbjct: 67  QKCIRT----NDIENVGVTARHHTLFEMLGNWSIGDYFKEEAIAWAWEFLTSDKWMGFEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             LY T Y ED +  ++WK+    + D ++ +   DNFW +   GPCGP +EIF+D+GE 
Sbjct: 123 ELLYATYYPEDTDTPEIWKQQPNFNPDHLVPV--EDNFWDIG-AGPCGPDTEIFYDRGEA 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ER++EIWNLVF +F          LP  ++DTGMGLERM +
Sbjct: 180 YNNLAEDDPENYPGG--ENERWLEIWNLVFSEFNHMPDDTYQPLPNKNVDTGMGLERMTS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+  E +T G+ YE  G N V+ +VI DH+R+ SF I+DG LP
Sbjct: 238 VVQDTPTNFETDLFLPIIKQIEGLTDGIVYEEAGANKVSFKVIADHIRAVSFAISDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGY+LRR++RR++ + R LG  +  +  L+P +   MG  Y EL +    ++  L 
Sbjct: 298 SNEGRGYILRRLIRRSVMHGRRLGIKDKFLAQLVPTIAQIMGQFYSELQEKVEFVQSVLA 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +T++ G   L  ++  L  +E+  + GD AFKLYDT G PL++ Q+    RG 
Sbjct: 358 SEEDRFHETIEAGEDHLVSIIESLKTEEVYEIPGDQAFKLYDTFGFPLELTQEEAELRGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D   F   +E+QR RAR       S   +   F+  + +    F+GYD L  +    
Sbjct: 418 S-VDTQGFEAEMEQQRQRARQARSKEESMNVQSTVFT--DIHTEYDFVGYDSLVSN---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + VKAIV + E V+     Q   V F+++PFYAE GGQ+ D
Sbjct: 471 -------------------ATVKAIVFEDESVQNLAKNQIGWVFFNRSPFYAEMGGQIAD 511

Query: 531 TGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G  + G+    ++ DVQK   G  +H        +  + S  L +D ++R   + NH+A
Sbjct: 512 KGLIMDGNDEVGRVLDVQKAPNGQAMHKVEALTMPINLDQSYTLQVDPKHRTLTNQNHTA 571

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG H +Q GS + PD LRFD +H   +T+ E+K++ED VN  I  +L V
Sbjct: 572 THLLHRALKDVLGDHANQAGSYVGPDRLRFDFSHFGKMTAEEIKAVEDKVNAFIEASLAV 631

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T  M  ++A A GA AL G KY D VRVV++  E     S  LCGGTHV++T +I    
Sbjct: 632 NTTEMPIDEAKALGAMALFGEKYGDVVRVVNISNE-----SIELCGGTHVANTNQIGTFK 686

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           ++SE+ I AGIRRIEA+TGQ A ++   Q+  L  +   LKVSQ + +V R++++  E  
Sbjct: 687 LLSETGIGAGIRRIEALTGQAAFNYYRDQEAILHQIQDRLKVSQTDMLVNRIDQMQAE-- 744

Query: 769 KLQLIHAK-RKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKI 820
            L+  HA+   LQ  V   +  K+ D       V++++  + +  +  ++ + D  ++K 
Sbjct: 745 -LKEAHAQIESLQAKVMQAASDKLFDEVKEVGAVSYIALSLKDQSADAMRQLGDIWKQKA 803

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + ++++   + E KA++L++  +  +D+   A DL +  AK +  GGGGG+P MAQ+GG
Sbjct: 804 NADLLIVAADNGE-KANLLVLANDQAIDKGVKAGDLIKALAKYV-QGGGGGKPQMAQAGG 861

Query: 880 PN 881
            N
Sbjct: 862 KN 863


>gi|228475198|ref|ZP_04059924.1| alanine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270809|gb|EEK12211.1| alanine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 876

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 340/919 (36%), Positives = 510/919 (55%), Gaps = 77/919 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA++LW +  GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTIHPEDVEAYRLWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                      PGG      E ERY+E+WNLVF ++          LP  +IDTGMGLER
Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I+  E ++G KY  NN   V  +VI DH+R+ SF I+DG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  G+ +L+ +++   +    +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           +  +D+ +F   +E+QR+RAR A            +  ++  K   +QF+GY+       
Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDVLKNINTK---SQFVGYE------- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T    +I+  ++  G+ V  A +G+ V  +  +TPFYA +GGQ+
Sbjct: 463 ----------------TTDYQTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    D   + + +V K   G  +H  IV+ G +     +   ++ + R+ +  NHS
Sbjct: 507 ADKGTVGNDQFAIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDAAVNKEERKDIQKNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  ILG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + 
Sbjct: 567 ATHLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTEEEIDQVERRVNEEIWRGIS 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M  ++A   GA AL G KY D VRVV++        S  LCGG HV +T EI L 
Sbjct: 627 VHIQEMPIQEAKEMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVDNTAEIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            IVSES   AG+RRIEA+TG+ A  +      K  S+   LKV S   V  +V +I E  
Sbjct: 682 KIVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENE 741

Query: 768 RKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818
           ++L     +R  ++      N+ED    ++  +N    + +EV+    KE++  MD  + 
Sbjct: 742 KQLNKQLEQRNKEITSLKMGNIED----QVEMINGFKVLATEVEVSNPKEIRQTMDDFKS 797

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K Q  II+L G   E K S++  V ++L  +  A D+ +  A ++ GG GGGRP MAQ G
Sbjct: 798 KKQDTIIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGG 855

Query: 879 GPNGNKADQAIAGVASFLK 897
           G       +++  +  ++K
Sbjct: 856 GTQPENISESLRFIKDYIK 874


>gi|254457078|ref|ZP_05070506.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085870|gb|EDZ63154.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 849

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 350/908 (38%), Positives = 510/908 (56%), Gaps = 84/908 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF+   H+ + S+ L+P +D +L+F N+GMVPFK+IFTG+  +P     T+ Q
Sbjct: 3   IREEYLKFFESKNHDRIASAPLVP-DDASLLFNNAGMVPFKSIFTGEIPRPANPRATSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L   +L
Sbjct: 62  TCLRAGGKHNDLENVGHTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITEVIKLPVDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           ++TV++ D+EA  LW+K   +S D+I+R+  +DNFW M +TGPCGPCSEIF+DQG E   
Sbjct: 122 WVTVHESDDEAELLWQK--HVSKDRILRLGDDDNFWQMGDTGPCGPCSEIFYDQGAENFS 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + +   +NY
Sbjct: 180 GEEDYLGGDGDRFLEIWNLVFMQYEKSADGTMTELPKPSIDTGMGLERVVAIKEGALSNY 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
              LF  +I   +++ G +YE  +  ++RVI DH+R++ FL+A GI  +NEGRGYVLRRI
Sbjct: 240 GSSLFMPIIVDVQKLIGKEYEYVSGASYRVIADHIRTTVFLLAQGINFSNEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+ E  M  L+  +   MG  Y  L      ++E +  E+ RF KT++ 
Sbjct: 300 LRRAVRHGYLLGFREAFMYKLVDTVVEIMGGEYDYLTVKATAVKEQIELEEARFFKTIES 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  +  L   E  +G+VAFKLYDT G PLD+ +D+L  + L  +D   F + + E
Sbjct: 360 GIALFEEEV--LSTKETFSGEVAFKLYDTFGFPLDLTEDMLKGKNLK-LDSAKFEELMLE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR+RA+A   G G   T   +  L EK+G   F+GY+ +  S          C+      
Sbjct: 417 QRTRAKAAWKGSGDADTHGDFKELLEKFGENTFVGYEFMAHS----------CK------ 460

Query: 485 TNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                  V+A++ +  + V       K  V+ D TPFYAE+GGQ GD G   G     ++
Sbjct: 461 -------VQALLDENFKSVSSLSPDTKGWVLLDITPFYAESGGQTGDCGELEGFA---KV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ---NRRQLSINHSATHLLHHALSTI 600
            D +K     F    + +  ++  E+ +   +D +   +R +++ +HSATHLLH  L  +
Sbjct: 511 EDTRK-----FFGLNLSQISVI-DELKIGTVVDAKVDISRNEITKHHSATHLLHAILYDV 564

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H+SQ GS +  D LRFD +H K +T  EL  IE  VN+ + + +P  T++M  EDA 
Sbjct: 565 LGDHISQAGSLVESDRLRFDFSHPKALTQTELVEIETRVNNDVLRAIPANTQVMGIEDAK 624

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            SGA A  G KY D VRVVS +       S   CGG HV +T  I    I  ES + AG+
Sbjct: 625 NSGAKAQFGEKYGDEVRVVSFDRA-----SVEFCGGVHVDNTANIGSFIITKESGVSAGV 679

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ GQ A  +   Q    +SL              V+E+  E + L ++    +L+
Sbjct: 680 RRIEAVCGQAAYKYFCEQ----RSL--------------VKEVEAEVKNLDVLAGISRLK 721

Query: 781 LNVEDLSCH------------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            N+ +L                  ++N ++ ++ E+ S ++K  +D L+ + +    ML 
Sbjct: 722 SNIAELKTELKEAQESSKVEITANEINGVAVVVEELASGDIKEKIDELKNQNEKLCAMLF 781

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  +K   VLI       D   A D  +  A +L GGGGGGRP  AQ+GG +  K  +A
Sbjct: 782 QVKGDK---VLIAAGIKNADA-KAGDWIKEIAPIL-GGGGGGRPDFAQAGGKDKTKLPEA 836

Query: 889 IAGVASFL 896
                 F+
Sbjct: 837 KVEALKFI 844


>gi|327402220|ref|YP_004343058.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327317728|gb|AEA42220.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 871

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 360/925 (38%), Positives = 512/925 (55%), Gaps = 97/925 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V  IR  F +FF   GH+++PS+ ++  NDPTLMFTN+GM  FK+ F G   P  + V  
Sbjct: 3   VHEIRKQFFDFFASKGHQIVPSAPMVVKNDPTLMFTNAGMNQFKDFFLGNAVPKNRRVAN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + + + 
Sbjct: 63  SQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKEEAITWAWELLTEVYKIPKD 122

Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RLY+TV++        +D+E++ +WK+   ++ D+II  +  DNFW M +TGPCGPC+EI
Sbjct: 123 RLYVTVFEGDEKDGVPKDQESYDIWKRF--IAEDRIIMASKKDNFWEMGDTGPCGPCTEI 180

Query: 176 FFDQGECIPGGLPGSSEEGERY--------IEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
             D           + E+G++Y        IEIWN VFMQF ++       LP   +DTG
Sbjct: 181 HVDNRPAT----ERAKEDGKKYVNEDHPQVIEIWNNVFMQFNRKADGSLEPLPATHVDTG 236

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFL 285
           MGLER+A  LQ+KT+NYDIDLF+ LIQ  EQV+G KY  N   +   RVI DH+R+ +F 
Sbjct: 237 MGLERLAMTLQDKTSNYDIDLFQTLIQHMEQVSGKKYGENETTDIALRVIADHVRAIAFS 296

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y  + LG  EP +  L   L   MG  + ELI+  
Sbjct: 297 IADGQLPSNTGAGYVIRRILRRAVRYGYQTLGLKEPFLSGLSVVLGKVMGDPFSELIKQG 356

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
            L+E+ +R E+  F +TL++GL  +D +++   K  + IL G   F+LYDT G P+D+  
Sbjct: 357 ELVEKVIREEELSFFRTLEQGLKRMDNLIAQARKTRETILQGPAVFELYDTFGFPIDLTS 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I     L  +D   F+  L++Q++R+RA      +      W  LK K    +F+GYD 
Sbjct: 417 LIARENKLL-VDEDGFDTELQKQKARSRA-----ATSIETDDWVVLK-KDSEEEFVGYDH 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  +  + + RKV  ++                                ++VF+ TPFYA
Sbjct: 470 LTTTVEIVKYRKVKQKQRSF----------------------------YQLVFNLTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GDTG        L I D  KK  G+ VH  +V+    + +      ++ ++RR 
Sbjct: 502 EGGGQVGDTGTISNANESLTIFDT-KKENGLIVH--LVDELPEKIDGQFTARVNEESRRL 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHSATHLLHHAL T+LG+HV Q GS + P+ LRFD +H   +T  E+  IE  V D 
Sbjct: 559 SASNHSATHLLHHALRTVLGAHVEQKGSLVNPNYLRFDFSHFSKVTDEEMAKIEAIVIDG 618

Query: 643 IAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I QNL +  +R +  + A   GA AL G KY D VRV  +++ D    S  LCGGTHV +
Sbjct: 619 IRQNLSLEESRNVPIDAAQEMGAMALFGEKYGDTVRV--IKFGD----SIELCGGTHVQN 672

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I L  I SES++ AGIRRIEAIT      +   Q+ KLKS+   LK +  +V   VE
Sbjct: 673 TGQIGLFKIQSESAVAAGIRRIEAITNVAVEGYYADQESKLKSVNELLK-NPKDVSKAVE 731

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +         LI    +LQ  VE+      K+   +  + IIS+ D   L +++D     
Sbjct: 732 D---------LISKNNQLQKQVENFKKEHAKLVKADLKTKIISKGDFSYLDALIDLNAGS 782

Query: 820 IQS----------GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867
           ++            +  ++G  +E K ++ ++V E L+    +NA +L +  A ++ GGG
Sbjct: 783 VKDILFQLKGEVPNLFAVIGSKEEDKCAISVLVDESLVSSKGWNAGNLVKSVASLIQGGG 842

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGV 892
           GG       +GG N N   +AI  V
Sbjct: 843 GGQAFFAT-AGGKNANGLKEAIEKV 866


>gi|270294506|ref|ZP_06200708.1| alanyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270275973|gb|EFA21833.1| alanyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 872

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 346/927 (37%), Positives = 519/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     + GS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVSGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G KY  +  + +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG+AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LL+  ++     GK+EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKSTGKNEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +LKE  G T+F+GY  
Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D+TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDKTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVVDT-KKENNLPIH--ITKKLPEHMEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  E+A   GA AL G KY D VRV+    SVE+          CG
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--- 752
           GTHV++TG I ++ I+SESS+ AG+RRIEA TG R    +   ++ L  L +    +   
Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAPDL 726

Query: 753 QGNVVGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            G +   ++E        E++ K +    K +L  NV++++  K+  + F + + +E   
Sbjct: 727 AGTIRKYIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKV--IKFCAPLPAET-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +  + AI  V
Sbjct: 840 GGGGGQPHFATAGGKNADGLNAAIDKV 866


>gi|239617978|ref|YP_002941300.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506809|gb|ACR80296.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 873

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 346/918 (37%), Positives = 516/918 (56%), Gaps = 82/918 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL+FF+   H +LPS+SLIP NDP LMFT +GMVPFK IF G+ +P Y  V T QK
Sbjct: 9   IRESFLKFFESKKHTILPSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYPRVATCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR      D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   + + +L+
Sbjct: 68  CVRT----VDIDNVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWAWEYITEVLKIPEDKLW 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---- 181
           ++VY +D+EA+++W+   G+S  +I+R+  +DN+W  A  TGPCGP SEIF D G     
Sbjct: 124 VSVYHDDDEAYEIWRNNVGISEKRIVRLGKDDNWWGPAGPTGPCGPSSEIFVDTGRTKDC 183

Query: 182 -----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                C P    G      R++E WNLVF ++          L K +IDTG+GLERMA +
Sbjct: 184 PDVENCSPACDCG------RFLEFWNLVFTEYNMDGDGNLTRLKKKNIDTGLGLERMAAI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q  ++N++ D+FK +++  E +  +KY     + V+ RVI DH R+ +FLI DG+LP+N
Sbjct: 238 MQGVSSNFETDMFKPIVERIEGLLNVKYGVSDKSDVSIRVIADHSRAITFLITDGVLPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRIMRRA+ +  LLG ++P +  +   +   +G  YPE+ +   L+EE    E
Sbjct: 298 EGRGYVLRRIMRRAIRHGSLLGSSKPFLYKIPEVVVVTLGDVYPEIKEKLSLVEEITLKE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF  T + G   L  ++    K   L+G+  F L+DT+G  L+++++I+  + L  +D
Sbjct: 358 EERFLTTFESGTKRLWQIVE---KKNRLDGEDLFLLHDTYGFHLELVEEIVAEKNLP-LD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +E+QR RAR  +  +        +    E  G T+F+GY+ L           
Sbjct: 414 KEGFKALMEQQRERARKAAGNVEYEKDSSRYRKAYEIIGGTKFVGYEKL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        V + +  I++  +I EE   G+K E++FD TPFY E GGQ+ D G  
Sbjct: 463 ------------TVKTKIAHILKDEKITEELSKGEKGELIFDITPFYPEKGGQVADRGII 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++  V    + + VH  +V+ G +++     L +D +NRR  + NH+ATHLLH
Sbjct: 511 KTAEGFAEVEHVFIPFQDLIVHRVLVKSGKIKSGDLATLIVDKENRRSTARNHTATHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV Q GS +  + LRFD +H   +   E++ IE+ VN  I + +PV     
Sbjct: 571 AALRKILGEHVKQAGSLVEAERLRFDFSHYTALDKEEIQKIEELVNRKILEAIPVDVAEK 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+       AL   KY DRVRVVS+     G  S  LCGGTHV +TGEI L  IVSES
Sbjct: 631 SFEEVKNEDVVALFQEKYGDRVRVVSI-----GDFSKELCGGTHVKNTGEIGLFKIVSES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-------NVVGRVEEIWEEY 767
           S+ AG+RRIEAITG ++   +      ++ L + L+V Q        N+ G++++  +E 
Sbjct: 686 SVSAGVRRIEAITGLKSLEKMTELMNLVEELRAVLEVPQEAFVEKIINLNGKLKDQAKEL 745

Query: 768 RKL--QLIHA------KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           ++L  +L+        +RKL L+          D   ++ ++       +++  D L +K
Sbjct: 746 KRLKEKLLSGEGASSLERKLTLD----------DAQVLARVVENTSMDVVRNTADVLMQK 795

Query: 820 IQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  G+++L     E  K   ++ V+++L  ++ A DLAR  A  L GGGGGGRP  AQ+G
Sbjct: 796 LGKGVVILFNRMPESGKVVFVVKVSKELQQKYRAGDLARKIATEL-GGGGGGRPDFAQAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G    + +  I  +  F 
Sbjct: 855 GKKIERVEWVIKNLEKFF 872


>gi|327439562|dbj|BAK15927.1| alanyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 890

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 344/922 (37%), Positives = 513/922 (55%), Gaps = 71/922 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L FF++ GH + PS+ L+P NDP+L++ NSG+   K  F G+  P    +T  
Sbjct: 9   SEIRRLYLNFFKEKGHHIEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRITNA 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ +I  AW+ LT  K    D 
Sbjct: 69  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKESIHYAWEFLTDPKWMGFDP 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +T++ ED+EA+ +W    G+  +++IR+    NFW + E GP GP SEIF+D+GE 
Sbjct: 125 EKLSVTIHPEDQEAYDVWHNEIGIPKERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGEE 181

Query: 183 IPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
              G P     +  E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +V+Q
Sbjct: 182 YGVGAPEEEMYTGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 241

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284
               N+D DLF  +I+ +E      Y+  + V+               +VI DH+R+ +F
Sbjct: 242 NVPTNFDTDLFMPIIEKTETFANRTYKRPHEVDLNEIFGSTEDVNTPFKVIADHIRTVAF 301

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YP++ + +
Sbjct: 302 AIGDGALPSNEGRGYVLRRLLRRAVRYAKKIGIEKPFMFELVPTVGEIMHDFYPQVKEKE 361

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL-SHLGKDE-ILNGDVAFKLYDTHGLPLDIMQ 402
             I+  +++E+ RF +TLD GL + + V  S   K E ++ G  AF+LYDT G P+++ +
Sbjct: 362 AFIQRVIKNEEVRFHETLDGGLAIFNEVAESQKAKGETVIPGADAFRLYDTFGFPIELTE 421

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     G+  +D   F  ++E+QR RAR     + S   + ++  +L ++   + FI YD
Sbjct: 422 EYAEEVGMT-VDQEGFEASMEQQRERARNARADVDSMQVQNEVLSNLTQQ---STFI-YD 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L                         S+ V AIV  G+    A  G++  V+  +TPFY
Sbjct: 477 ALEA-----------------------SAKVAAIVVNGQETSTASEGEEALVILSETPFY 513

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GGQ+ DTG    DG    + DVQK   G  +H  +VE G +         ++   R+
Sbjct: 514 AEMGGQIADTGIIKADGFTAIVKDVQKAPNGQPLHTVVVESGEMNVGDIATAKVEEAKRK 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHL+H AL  +LG HV+Q GS + PD LRFD +H    T  EL  +E  VN+
Sbjct: 574 LILKNHTATHLMHRALKDVLGDHVAQAGSYVGPDRLRFDFSHFGAATKEELAQVERAVNE 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I +++ VV + M+ + A A GA AL G KY D VRVV+V       +S  LCGG HVS 
Sbjct: 634 KIWEDIEVVIQEMDIDSAKAMGAMALFGEKYGDVVRVVAV-----SDYSIELCGGLHVSR 688

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           + EI +  IVSES I AG RRIEA+TG+ A   +  ++  L   A  LK +  +V  RV 
Sbjct: 689 SSEIGIFKIVSESGIGAGTRRIEAVTGKAAYEAIKEEEAILNEAAGLLKSNAKDVATRVA 748

Query: 762 EIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +  +Y++LQ     L       Q      +  KI DV  ++  +   D+ +L+ +MD L
Sbjct: 749 TLQADYKELQRENDSLSQKIANAQAGAVLDAAQKIGDVTVLATRVEAKDNNQLRQMMDDL 808

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++K++S +I+L  +  + K  +   VT+D++   ++A ++ +  A+   GG GGGRP MA
Sbjct: 809 KEKMESAVIVLGAVDGD-KVMLCAGVTKDIVGGNYHAGNIVKQVAEAC-GGKGGGRPDMA 866

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +G  + +K + A+  V   +K
Sbjct: 867 MAGAKDASKLEDALNAVYEHVK 888


>gi|257082652|ref|ZP_05577013.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256990682|gb|EEU77984.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol]
          Length = 880

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/921 (38%), Positives = 527/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D+G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DSGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817
            ++      K   QL     N +     K + D+N + +I ++V+ K   +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|302386453|ref|YP_003822275.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197081|gb|ADL04652.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 879

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 350/891 (39%), Positives = 513/891 (57%), Gaps = 50/891 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT    LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTGVIGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF++W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFEIWNKKIGIAPERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L+     +   +Y+ N  V+   R+I DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALLNRVAALARTEYKKNADVDVSLRLITDHVRSCTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K +I + L  E+++F 
Sbjct: 301 VLRRLLRRAARHGRLLGIEGKFLADLSTTVIELSKDGYPELEEKKAMILKVLTQEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K  + IL+G+ AFKLYDT+G PLD+  +IL  +   G+D   
Sbjct: 361 KTIDQGLAILGELEEEMVKKGETILSGENAFKLYDTYGFPLDLTLEILEEKNF-GVDEEG 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F  A+++QR  AR A       G    ++ S+      T+FIGYD            K++
Sbjct: 420 FKAAMQKQRETARNARKTTNYMGADVTVYQSIDPAI-TTEFIGYD------------KLI 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           C    + LT              ++VE    G+   +V +QT FY   GGQ GD G  + 
Sbjct: 467 CDSKILVLTTDT-----------DLVEALTDGETGTIVTEQTVFYGTMGGQQGDVGYIVS 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D    ++ +      G   H   + +G+L++   + L +   NR+    NHSATHLL  A
Sbjct: 516 DRGEFKVEETIHLQGGKVGHVGKMAKGMLQSGDVVTLKVCEGNRQNTGKNHSATHLLQKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L T+LGSHV Q GS +  D LRFD TH   +T  E++ +E  VN+ I ++LPV T IM  
Sbjct: 576 LRTVLGSHVEQAGSFVDGDKLRFDFTHFSAMTPEEIRQVETLVNEKIKESLPVKTEIMTL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           EDA  SGA AL G KY D VRVV +     G  S+ LCGGTH+++TG I    I+SE+ I
Sbjct: 636 EDAKKSGAMALFGEKYGDTVRVVKM-----GDFSTELCGGTHINNTGVIGSFKILSETGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG     +    +++L   A   K     +  ++E + +E + L   + K
Sbjct: 691 AAGVRRIEALTGDGLMHYYQETEKELHEAAKAAKTMPSALTSKIESLLDEIKALHSENEK 750

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G+I++  I 
Sbjct: 751 LKSRLAKDSLGNVMDQVKEVKGVKILATKVMDVDMNGLRNLGDQLKEKLGEGVIVIASI- 809

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++ K +++  VT++   +  +A +L +  A ++ GGGGGGRP+MAQ+GG N
Sbjct: 810 QDDKVNLMAAVTDEAQKKGAHAGNLIKAIASLV-GGGGGGRPNMAQAGGKN 859


>gi|187778850|ref|ZP_02995323.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC
           15579]
 gi|187772475|gb|EDU36277.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC
           15579]
          Length = 879

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 344/916 (37%), Positives = 528/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHFRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y+ED+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEEDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q   + +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDSIFEVDTIKAVLDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + K  I++ ++ E+
Sbjct: 297 GRGYVLRRVLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKKEYIKKVIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL  +G+  I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEQGI-NI 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  S+      TQF GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLSIN-----TQFEGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              + S V  IV+  E   +   G K  +V   TPFYAE GGQ+
Sbjct: 467 -------------------LKSKVALIVENEEFKNQIEKGNKGVIVTYNTPFYAEMGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   V  G +  E  ++L ++ + R  +  NH+
Sbjct: 508 GDTGIIYNDSFKAKVIDCKKNISGKILHFVRVLEGKMSLEDEVILKVNEERRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++ AELK +E  VN  I +   
Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEAELKEVEKIVNKEIMKANV 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHV ++GEI + 
Sbjct: 628 VNTKVMNIEEAKEQGAIALFDNKYKDDVRVVSV-----GEFSKELCGGTHVGNSGEIGMF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            IVSE+ + AGIRRIEAIT  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KIVSEAGVAAGIRRIEAITAFKAIEYVDHKNNILKDAAQILKCNEKELLNKLSHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED   + I +   V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++      + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEIAAIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK ++AI  V + ++
Sbjct: 860 PNKLEEAIKTVETVVE 875


>gi|166030431|ref|ZP_02233260.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
 gi|166029789|gb|EDR48546.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
          Length = 893

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/912 (39%), Positives = 527/912 (57%), Gaps = 60/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 21  VNELRRMFLEFFESKDHLALKSFSLVPHNDKSLLLINSGMAPMKPYFTGQEIPPRRRVTT 80

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 81  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTEVVGLDPE 136

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+ D+EA+++W K  G+ A++I R    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 137 RLYPSVYENDDEAWEIWNKEIGVPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 195

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 196 GCGKPGCTVGCECDRYMEIWNDVFSQFNNDGHGNYSDLAQKNIDTGMGLERLACVVQDVD 255

Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +DID  K    H+   S +  G+ +E +  V+ RV+ DH+RS +F+I+DGI+P+N GR
Sbjct: 256 SMFDIDTMKALRDHVCAMSGKHYGIDHETD--VSLRVVTDHIRSVTFMISDGIMPSNSGR 313

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     ++ L   +       YPEL + K  I   +  E+ +
Sbjct: 314 GYVLRRLLRRACRHGRLLGIEGAFLVELAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQ 373

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  +   + K  + +L+G+ AFKLYDT+G P+D+  +IL  +GL   D 
Sbjct: 374 FNKTIDQGLSILADMEEEMKKNGETVLSGENAFKLYDTYGFPIDLTSEILEEKGLT-YDK 432

Query: 416 ISFNQALEEQRSRARA----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             F +A +EQR+++      HS    +G    ++  L  K  AT+F+GY+ L        
Sbjct: 433 EGFEKAQKEQRAKSEGTFGTHSY---TGKDATVYDELDAKL-ATEFVGYENL-------- 480

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
               +C            + V A+  + EIV+    G+K  ++ D+T FY   GGQ GD 
Sbjct: 481 ----VCD-----------AKVTALTSEEEIVDALSDGEKGTIIVDKTTFYGTMGGQEGDI 525

Query: 532 GC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G     DG    + +    A     H   V  G+++   ++ + +D +NR   + NHSAT
Sbjct: 526 GTIKTADG-EFVVENTIHLAGTKIGHVGYVSHGMIKVGDTVSMEVDKENRNLSARNHSAT 584

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG+HV Q GS +  + LRFD TH   ++  ELK +E+ VN+ IA+ LPVV
Sbjct: 585 HLLQAALRQVLGTHVEQAGSYVDAERLRFDFTHFSALSKEELKQVENIVNEKIAECLPVV 644

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            + M  E+A  +GAAAL G KY D VRVVS+     G  S   CGGTHVS+TG I  L I
Sbjct: 645 AKNMPIEEARKTGAAALFGEKYGDVVRVVSM-----GDFSVEFCGGTHVSNTGVISALKI 699

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE+ + AG+RRIEA+T +    +    ++KL+  A+ +K +   +  ++  +  E + L
Sbjct: 700 ISETGVAAGVRRIEALTSKGLLKYYDDMEKKLQEAAALVKATPNQLSDKIRHLQAENKDL 759

Query: 771 --QLIHAKRKL-QLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +L   K K+ +  + D+S    ++  V  ++  + +VD   L+ + D L++K+  G+I
Sbjct: 760 HSELESVKSKMAKEAMGDVSDQVTEVKGVKLIAAKVDDVDMNGLRDLGDQLKEKLGEGVI 819

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L   +  K + V +   E +    +A +L +  A ++ GGGGGGRP+MAQ+GG N +  
Sbjct: 820 VLASAAGGKVSLVAMATDEAVKKGAHAGNLIKGIAGLV-GGGGGGRPNMAQAGGKNPDGI 878

Query: 886 DQAIAGVASFLK 897
           D AIA V+  L+
Sbjct: 879 DAAIAKVSEVLE 890


>gi|329957545|ref|ZP_08298020.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328522422|gb|EGF49531.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 873

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 346/923 (37%), Positives = 514/923 (55%), Gaps = 87/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIGDMSGTAYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +L+E  G T+F+GY  
Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D+TPF
Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLDKTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  L+  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPLMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS ++P+ LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHVEQKGSLVSPESLRFDFSHFQKVTDEEIRRVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFS------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756
           ++TG I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +    G +
Sbjct: 671 AATGNIGMIKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSGAI 730

Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        E++ K +    K KL  N+++++  K+  + F + +I    +  +K
Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKV--IKFCAAMIP---ADAVK 785

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + A+  V
Sbjct: 845 GQPHFATAGGKNPDGLNAAVEKV 867


>gi|73748005|ref|YP_307244.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|83305846|sp|Q3ZWC3|SYA_DEHSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|73659721|emb|CAI82328.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 871

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 344/909 (37%), Positives = 529/909 (58%), Gaps = 51/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIVSSSLIPHNDPTLLLTTAGMVQFKPYYMGVAKPENPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + + QKC R      D+++VG  + H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MASCQKCFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179
              RL+ITVY +D+EA  LWK+  G+  ++I+R+   DNFW  A ++GPCGPCSEI +D 
Sbjct: 116 PAERLWITVYLDDDEAIALWKE-QGVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           G+   C       S + G R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  +
Sbjct: 175 GQETGCGKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTIL 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294
           +Q K N Y+ D+F  +++ +  ++G KY  +   +   R++ +H R  +FLIADG++P  
Sbjct: 234 MQSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDK 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRR++RRA+ + R LG   P ++ +  A+   M   YPEL + +  + E + SE
Sbjct: 294 AGRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + RF +TL  GL LL+ ++    K   ++G  AFKLYDT+G P+++  +I   +GL+ +D
Sbjct: 354 EARFSETLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VD 411

Query: 415 IISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +  F   +E QR++AR+       +  T +   +++     T F+GY+L           
Sbjct: 412 LDGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAE-KTCFVGYELA---------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
               QK          S +K I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG 
Sbjct: 461 ---IQK----------STIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGE 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            I  G R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L
Sbjct: 508 IITGGGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHIL 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    
Sbjct: 568 QTALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEE 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M    A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SE
Sbjct: 628 MPYRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           SS+ AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+  
Sbjct: 685 SSVGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKA 744

Query: 772 LIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           + + +R++     +    K  D   V  +   ++ V++  L+   D L+ K+ SG+I+L 
Sbjct: 745 VQNLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL- 803

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G   E K   L +VT DL+ + ++A ++ +  +++  GGGGGG+P+MAQ GG + +K D+
Sbjct: 804 GTVTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKSKLDE 862

Query: 888 AIAGVASFL 896
           A+  V   +
Sbjct: 863 ALQAVKGMI 871


>gi|256853016|ref|ZP_05558386.1| alanyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307291365|ref|ZP_07571249.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|256711475|gb|EEU26513.1| alanyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306497596|gb|EFM67129.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030000|gb|EFT41932.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 880

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 360/922 (39%), Positives = 528/922 (57%), Gaps = 81/922 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           D G      GD +   + DV+K   G F+H   V   +   ++   L +D + R ++  N
Sbjct: 510 DRGYVKNTAGD-VVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++  
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL-- 740

Query: 766 EYRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDAL 816
             ++      K   QL     N +     K + DVN + +I ++V+ K   +L+ + D  
Sbjct: 741 --QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQW 798

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHM 874
           ++K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP M
Sbjct: 799 KQKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDM 855

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ+GG N      A+A V ++L
Sbjct: 856 AQAGGKNPAGIADALAEVENWL 877


>gi|154497721|ref|ZP_02036099.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC
           29799]
 gi|150273219|gb|EDN00364.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC
           29799]
          Length = 890

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 338/908 (37%), Positives = 510/908 (56%), Gaps = 54/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+++P    VTT
Sbjct: 8   LNELREMFLKFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPCHRVTT 67

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKC+R G    D++N+G T RH T+FEMLGNFSFG YFK+ AI  AW+ LT      LD
Sbjct: 68  CQKCIRTG----DIENIGHTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSPEWVGLD 123

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY +V+        D+EAF++W +  G+ A++I +    DNFW    +GPCGPCSEI
Sbjct: 124 PERLYPSVFAGNETTPADDEAFRIWHEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 182

Query: 176 FFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           ++D+GE    G PG +   + +RYIE+WN+VF QF    +     L + +IDTGMGLER+
Sbjct: 183 YYDRGERWGCGKPGCTVGCDCDRYIEVWNVVFSQFNNDGENHYTELKQKNIDTGMGLERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A V Q+  + +D+D   ++     ++T   Y       V+ RVI DH+RS++F+I DG+L
Sbjct: 243 ACVCQDVASLFDVDTVMNITNKVSEITHAHYGETAAKDVSLRVITDHIRSATFMICDGVL 302

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA  + +LLG  EP +  +   +  E    YPEL + +  I + +
Sbjct: 303 PSNEGRGYVLRRLLRRAARHGKLLGVNEPFLYEVCDTVIHENEGHYPELRERQDYITKVI 362

Query: 352 RSEDERFGKTLDRGLVLLDGVLS-HLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R+E+E F +T+D GL + + +LS H  K E + +G  AFKLYDT+G P+D+  +++  +G
Sbjct: 363 RTEEENFARTIDGGLKIFNDMLSGHKEKGEKVFSGADAFKLYDTYGFPIDLTIEMVQEQG 422

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F   +EEQ+ RAR     LG      + F   +    TQF+GYD        
Sbjct: 423 MT-VDQEGFKVLMEEQKVRARKAREALGDLGWAGVEFG--KDVPETQFVGYDHTS----- 474

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            +D KV+                 A+V + E  EE + G +  VV D+TPFYAE GGQ+ 
Sbjct: 475 IDDAKVV-----------------ALVVENEQAEELMPGVEAIVVLDKTPFYAEMGGQVA 517

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G       + Q+TDVQK   G ++H   +  G+++   ++  +ID + R+ +   HSA
Sbjct: 518 DHGVITMGDAQFQVTDVQKNKGGKYMHTGKLTGGVIKLGDTVSASIDVKRRKAIMRAHSA 577

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL T+LG HV Q GS +  D LRFD TH   +T+ EL  +   VN+ + +   V
Sbjct: 578 THLLDKALRTVLGDHVQQAGSLVEEDRLRFDFTHFSAMTAEELSQVSAMVNEAVLEGYDV 637

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T ++  E+A   GA AL G KY D VRVV +    G  +S   CGGTH+ +T ++ + +
Sbjct: 638 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDM----GEGYSVEFCGGTHLDNTAKVGVFH 693

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE S+ +G+RRIEA TG ++   +    +KL   A+ LK     +  + E+   E R+
Sbjct: 694 IESEFSVASGVRRIEATTGAQSLKIMNQNQQKLFEAAAVLKAKPSELREKAEQTIAELRE 753

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+ +  K K +    +     +  H + D+  ++  +   D+ +L+ + D L+ K  + +
Sbjct: 754 LRHMVEKFKAKEAAGETERFLMGGHTVGDLKVLTATLPNADAAKLRQMGDMLRDKQPNVV 813

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +L  ++  K    ++   E +     A D+ + +   + GG GGG+P  A  GG +  K
Sbjct: 814 AVLSAVNDGKITFQVVCGKEAVAKGIKAGDIIK-NVTAICGGKGGGKPDSAMGGGFDVLK 872

Query: 885 ADQAIAGV 892
            D A+A V
Sbjct: 873 LDDALAKV 880


>gi|325570263|ref|ZP_08146129.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156746|gb|EGC68920.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 880

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 361/927 (38%), Positives = 533/927 (57%), Gaps = 81/927 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT   
Sbjct: 61  PRMTNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL+ + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWAEEVGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+G       E  P   PG   E ERY+EIWNLVF +F  Q       LP  +IDTGMG
Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LERM +++Q    N++ DLF  +I A   ++G    G++    ++ +VI DH+R+ SF I
Sbjct: 232 LERMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDAAFLYKLVPIVGEIMESYYPEVLEQQEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V++ +  D  + L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRNEEERFHETINEGLDILNQVIAQVKADNQDTLAGQDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               GL  +D   F Q ++ QR+RARA      S+G+ S     I          ++F+G
Sbjct: 412 AEDEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSALLTDIKVD-------SRFVG 463

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L  +  +                         ++ Q E + ++VS  + +++F +TP
Sbjct: 464 YDSLEANSEL------------------------LVIIQDEALHDSVSTGEAKLIFAETP 499

Query: 520 FYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ DTG  +  DG I  ++TDV+K   G F+H A V +  L+  ++  L +D 
Sbjct: 500 FYAEMGGQVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATV-KAPLQEGVNYFLQVDQ 558

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E 
Sbjct: 559 HRRNKIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQ 618

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I + LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGT
Sbjct: 619 IVNQKIWEALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGT 673

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV++T +I +  IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K +Q   V
Sbjct: 674 HVANTEDIGIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEETQLKAIAGIVKSAQLKEV 733

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK-IADVNFMSHIISEV---DSKELKS 811
           V + E++  + R+LQ  +     +L N +     K + +VN +  I ++V   D  +L+ 
Sbjct: 734 VAKTEQLQAQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQ 793

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGG 869
           + D  ++K  S I++L   + + K ++L  + +   ++   A DL + ++ KV   GGGG
Sbjct: 794 LADQWKQKDHSDILVL-ATANDGKVNLLAAMNKVANEKGLKAGDLIKEIAPKVG--GGGG 850

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           GRP MAQ+GG N      A+   A++L
Sbjct: 851 GRPDMAQAGGKNPEGITAALETAAAWL 877


>gi|257466745|ref|ZP_05631056.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917894|ref|ZP_07914134.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691769|gb|EFS28604.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 866

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 335/902 (37%), Positives = 516/902 (57%), Gaps = 62/902 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  +W+ +T+   L + +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGLPKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEDCHFPRERIVRMGESENWWAAGPTGSCGPCSEIHVDLGPEY- 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++Q K
Sbjct: 179 GGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +NN++ DL   L++ + ++T  KY  +     + +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 SNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+E+F
Sbjct: 299 YVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  +      GK   L+G++ FK+YDT+G P ++ ++I   RG+A +  
Sbjct: 359 SNTLDQGIQLVNEQIEMALQAGKSS-LDGEITFKMYDTYGFPYELTEEICNERGIA-VSQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQ+ +AR+    +     +       +K+G T+F GY         +E  K+
Sbjct: 417 EEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHS------TEEKAKL 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  +   D T                         + ++FD+TPFY E+GGQ+GD G   
Sbjct: 471 LNIRQKEDGT-------------------------LLLIFDKTPFYGESGGQVGDHGSIS 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  + ++ DV+K+ E IF H   V  G         LT+D + R  +S NH+ATHLLH 
Sbjct: 506 SEAFQGKVLDVKKQKE-IFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS +  + LRFD +H + +T  +++ +E+ VN+ I++ + V      
Sbjct: 565 ALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSHKT 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE  
Sbjct: 625 MEEAKVCGAMMLFGDKYGDVVRVVHVP-----GFSTELCGGIHVENIGHIGLFKIVSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLI 773
           I AG+RRIEA TG  A   +      LK  A  LK     ++ +VE++ +E ++   ++ 
Sbjct: 680 IAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKAREIT 739

Query: 774 HAKRKL-QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+ +   E L  H  +IADV        +    +L+ ++D ++ K ++ I++L   
Sbjct: 740 SLKEKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT-- 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S  +K S  + V++ L  ++ A +L +++A++  GG GGG+P  AQ+GG + +K ++A+ 
Sbjct: 798 STFEKLSFAVGVSKALTGKYKAGNLVKIAAEIT-GGKGGGKPDFAQAGGKDKSKIEEAME 856

Query: 891 GV 892
            +
Sbjct: 857 AI 858


>gi|300770787|ref|ZP_07080665.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762344|gb|EFK59162.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 893

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 336/923 (36%), Positives = 520/923 (56%), Gaps = 78/923 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+N   IR  FL FF+   H+++PS+ ++  NDPTLMFTN+GM  FK+ F G+ +P Y  
Sbjct: 23  MTN-REIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKYSR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT  + L
Sbjct: 82  IADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTVVYKL 141

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+ RLY+T+++        +D EA+  WK  S +S D+I+     DNFW M ETGPCGPC
Sbjct: 142 DKDRLYVTIFEGDDSEGLVKDTEAYDFWK--SWISEDRILLGNKKDNFWEMGETGPCGPC 199

Query: 173 SEIFFD-QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI +D + E      PG S    +  + IEIWNLVFMQF +        LP   +DTGM
Sbjct: 200 SEIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGM 259

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   +Q K++NYD D+F+ +I    Q  G++Y  +    +  RV+ DH+R+ SF I
Sbjct: 260 GFERLVRAIQGKSSNYDTDVFQPMIAFIAQKAGIQYGADERTDIAMRVLSDHIRAVSFAI 319

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   L +  P +  L+P L  E    + ELIQ + 
Sbjct: 320 ADGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFINELVPLLAKEFEGVFDELIQQQD 379

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ +  E+  F +TL  G+   +   S+   +  + G+ AF+L+DT+G P+D+ + + 
Sbjct: 380 FVQKVVLEEEVSFLRTLVTGVQRFE---SYAESNTAVGGEFAFELFDTYGFPIDLTELLA 436

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G+  +D+  F +AL+ Q+ R+RA +  + +G     W ++ E     +F+GYD L+ 
Sbjct: 437 REKGME-VDMAGFQEALQIQKDRSRA-ATAIDTGD----WVAVSED-DQVEFVGYDNLKA 489

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  + + RKV  +                              ++ ++V   TPFYAE G
Sbjct: 490 TTEIVKYRKVTAK----------------------------GKEQYQLVLSVTPFYAEGG 521

Query: 526 GQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+GD+G  + +  G ++ ITD  KK  G+ VH        ++ E +    +D Q R   
Sbjct: 522 GQVGDSGVLLSESTGEKIYITDT-KKENGLIVH--FTNTLPVQMEGTFEAKVDVQKRLDT 578

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV+Q GS +  D LRFD++H   +T  ELK +ED VN  I
Sbjct: 579 ENNHSATHLLHAALKEVLGTHVNQKGSLVNADILRFDISHFAKVTEEELKQVEDIVNAKI 638

Query: 644 AQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  + A+ SG  AL G KY D VRV++ + +     S  LCGGTHV +T
Sbjct: 639 RENIPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVITFDDQ----FSKELCGGTHVKAT 694

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I+SES++ AG+RRIEAITG +  + +    + +  L   L  +  + V  + +
Sbjct: 695 GQIGFFKIISESAVAAGVRRIEAITGTKCAAVIREHFDLVHRLGELLH-NPKDFVSTLSK 753

Query: 763 IWEEYRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           + +E   L+      +I     L+ ++E     +I  VNF++  +   +++ LK++  AL
Sbjct: 754 VIDENSALKKEIEKSIIEKSLALKSDLEQ-KIQQIDGVNFLATQVELPNAEALKTLAYAL 812

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
           +  + + + +++G   + K ++ +VV++ L      NA  + R  AK +  GGGGG+P  
Sbjct: 813 KGAVDN-LFLVLGADFDGKPNLTVVVSDQLSKERGLNAGTIVRELAKEI-NGGGGGQPFF 870

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG N      AIA   ++++
Sbjct: 871 ATAGGKNPEGLPAAIAKAKNYIQ 893


>gi|291297318|ref|YP_003508716.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290472277|gb|ADD29696.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 883

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 337/852 (39%), Positives = 494/852 (57%), Gaps = 59/852 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60
             + IR  FL+FF+  GH  LPS S++P +DPTL+F N+GM P K  F G+ KPV+    
Sbjct: 2   KTAEIREKFLQFFESKGHLRLPSFSVVPQDDPTLLFINAGMTPLKPYFLGK-KPVFPGHE 60

Query: 61  -----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                VTT QK VR G    D++NVGRTNRH T FEMLGNFSFG YFK+ AI+ AW+ LT
Sbjct: 61  GEWYRVTTCQKSVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAIEWAWEFLT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168
             K   LD  R+Y+T+Y +D+EAF+ W ++ G+  +KI R   ++NFW     +    GP
Sbjct: 117 DPKWLGLDPTRIYVTIYKDDDEAFEHWTRV-GVPPEKIHRFDADENFWPQNAPTKGPNGP 175

Query: 169 CGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPCSEI++D+G             + E  R++E+WNLVF Q+++++      LPK +ID
Sbjct: 176 CGPCSEIYYDRGPAFGSDTWADYYETRESNRFVELWNLVFPQYDRKDGGVLEPLPKPNID 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285
           TGMGL R+A VLQ+ T+ Y+ D F+ LI    ++TG+ YEG + V HRVI +H R+ +F+
Sbjct: 236 TGMGLARVAMVLQDVTDFYETDEFQPLIAKIVELTGISYEGPSSVAHRVIAEHARAVTFI 295

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ++DG+  +N GRGYV+RR++RRA+ +  LLG  EP M  L   +   MG  YPEL +   
Sbjct: 296 LSDGVHFSNTGRGYVVRRLLRRAVRFGYLLGLREPFMYRLAEVVAQVMGGVYPELKENLE 355

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ ++ E+E+F +TL+ G+  LD +L++L   + L G  AF LYDT+G PLD+  +I 
Sbjct: 356 GVQKQIKIEEEQFLRTLESGIKRLDAMLANLKPGDTLAGRDAFTLYDTYGFPLDLTIEIA 415

Query: 406 CARGLAGIDIISFNQAL---EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
              G+  +D   F QAL   +E+   A A S  L   + E +  +L   YG T+F+GY+ 
Sbjct: 416 SEHGVQ-VDTEGFEQALEEQQERARAAAAFSKELFKRSNEAL-AALAADYGGTKFVGYES 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                          + VK ++   + +EEA +G +V+VV D+TPFYA
Sbjct: 474 LE-----------------------AQAQVKLLLVGEQTIEEAPAGTEVQVVLDRTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G    +G   +++  QK  +GIF+H A VE G L+   ++   +D  +RR 
Sbjct: 511 EGGGQVGDAGVLEWEGGWARVSTTQKNPDGIFLHIARVEEGTLKAGSTVRALVD-MHRRD 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL  +LGSHV Q GS + PD LRFD +  +PI   +L  IE  VN  
Sbjct: 570 TEKNHTATHLLHAALRAVLGSHVQQKGSYVGPDRLRFDFSQFEPIAPRDLARIELLVNRW 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I  + PV       E+A   GA AL G KY D VRVVSVE     V S  LCGG HV  T
Sbjct: 630 IQADFPVSYTYKPLEEARKEGAMALFGEKYGDVVRVVSVEGAIDNVTSKELCGGCHVRRT 689

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           GEI    IV+E S+ AG+RRIEA+TG  A  ++    ++L  L+  L  +  +++ RV +
Sbjct: 690 GEIGAFVIVAEESVAAGVRRIEALTGTGATQYVREMLDRLGGLSRELGTTPEHLLERVNK 749

Query: 763 IWEEYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + +E +       KL+L  A+ +L  +   +S  +     +++  +  +++  L+   D 
Sbjct: 750 LQDELKAREKEIEKLKLDLARAQLGGSAAGISLKEANGYRYLAVKLEGLEAGALRGAADE 809

Query: 816 LQKKIQSGIIML 827
           L  + Q+ ++ +
Sbjct: 810 LLDRHQADLVAV 821


>gi|257085361|ref|ZP_05579722.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257086856|ref|ZP_05581217.1| alanyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|257089773|ref|ZP_05584134.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257415989|ref|ZP_05592983.1| alanyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|307288125|ref|ZP_07568135.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|312900645|ref|ZP_07759942.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312904123|ref|ZP_07763291.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256993391|gb|EEU80693.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256994886|gb|EEU82188.1| alanyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256998585|gb|EEU85105.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257157817|gb|EEU87777.1| alanyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|306500861|gb|EFM70179.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|310632599|gb|EFQ15882.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311292126|gb|EFQ70682.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315027379|gb|EFT39311.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315147876|gb|EFT91892.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315164259|gb|EFU08276.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315166647|gb|EFU10664.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315578468|gb|EFU90659.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 880

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817
            ++      K   QL     N +     K + DVN + +I ++V+ K   +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|291550263|emb|CBL26525.1| alanyl-tRNA synthetase [Ruminococcus torques L2-14]
          Length = 879

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/895 (39%), Positives = 517/895 (57%), Gaps = 58/895 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY++D+EAF++W K  G+ A++I R    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEDDDEAFEIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF          L + +IDTGMGLER+A ++Q+  
Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240

Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +DID  K    H+   S +  G+ +E +  V+ RV+ DH+RS +F+++DGILP+N GR
Sbjct: 241 SMFDIDTMKALRDHVCNLSGKQYGIDHETD--VSLRVVTDHIRSVTFMVSDGILPSNSGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     ++ L   +       YPEL + K  I   +  E+  
Sbjct: 299 GYVLRRLLRRACRHGKLLGIDGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEAN 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  + + + K  +++L+G+ AFKLYDT+G P+D+  +IL  +GL   D 
Sbjct: 359 FNKTIDQGLAILADMEAEMEKNGEKVLSGENAFKLYDTYGFPVDLTSEILEEKGLT-YDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA---TQFIGYDLLRGSKFMKED 472
             F +A EEQR+++   + G  S T +++  S+ ++  A   T+F+GYD L         
Sbjct: 418 EGFKKAQEEQRAKSEG-TFGTHSYTGKEV--SVYDQLDAALETEFVGYDNLT-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  + E+V+    G+K  ++ +QTPFYA  GGQ  D G
Sbjct: 467 ---------------FDSKVTALTTETEVVDALSDGEKGTIIVEQTPFYATMGGQEADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D    A     H   V +G+++   ++ L +D +NR     NHSATHL
Sbjct: 512 VIRTADGEFVVEDCIHLAGTKVGHVGHVVKGMIKIGDAVTLEVDAKNRALTERNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +  D LRFD TH   +T  ELK +E+ VN+ IA  L VVT+
Sbjct: 572 LQKALRTVLGSHVEQAGSFVNADRLRFDFTHFSAVTPEELKKVEEIVNEQIANALAVVTK 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            +  E+A  +GA AL G KY D VRVV     D    S   CGGTHV +T EI  L I+S
Sbjct: 632 NLPIEEARKTGAQALFGEKYGDVVRVV-----DMSGFSVEFCGGTHVKNTSEITALKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES + AG+RRIEA+T +   ++    +  LK  A  +K +  N+  ++  +  E + L  
Sbjct: 687 ESGVAAGVRRIEALTSEGLMNYYAEMERLLKEAAQLVKATPENLAEKITHLQAENKSLKG 746

Query: 771 QLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   K K+ Q    D+     ++  V  ++  +  VD   L+ + D L++K+  G+++L
Sbjct: 747 EVESLKSKMAQSAAGDILDQVKEVKGVKLLAAQLDGVDMNGLRDLGDQLKEKLGEGVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
                + K S++   T+  + +  +A +L +  A ++ GGGGGGRP+MAQ+GG N
Sbjct: 807 AS-GNDGKVSLMATATDGAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMAQAGGKN 859


>gi|300860344|ref|ZP_07106431.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|300849383|gb|EFK77133.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|315145691|gb|EFT89707.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2141]
          Length = 880

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817
            ++      K   QL     N +     K + D+N + +I ++V   D  +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPEGIADALAEVENWL 877


>gi|167758103|ref|ZP_02430230.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704]
 gi|167664000|gb|EDS08130.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704]
          Length = 879

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 355/909 (39%), Positives = 517/909 (56%), Gaps = 54/909 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ +I+  W+ LT    LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EA+++W K  G+ A++I R    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A ++QE  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACIVQEVD 240

Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +DID  K    H+ + +    G   E +  V+ RVI DH+RS +F+I+DGI+P+NEGR
Sbjct: 241 SMFDIDTMKALRDHVCRLAHAEYGRDEETD--VSLRVITDHIRSVTFMISDGIMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLL      ++ L   +       YPEL + K  I + +  E+E+
Sbjct: 299 GYVLRRLLRRACRHGRLLDIPGEFLVELAQNVIEGSKDGYPELEEKKEFIFKVIAKEEEQ 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  +++   K  ++ L+G  AFKLYDT+G PLD+ ++IL  +G++ +D 
Sbjct: 359 FNKTIDQGLSILSDMVAETEKKGEKTLDGQNAFKLYDTYGFPLDLTKEILEEKGMS-VDE 417

Query: 416 ISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F +A+E QR  AR A  +    G    ++ S+      T+F+GYD L           
Sbjct: 418 KGFKEAMEIQRKTAREAREVTNYMGADVTVYESIDPSI-TTEFVGYDNL----------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V  +    E+V+    G++  +  ++TPFYA +GGQ  D G  
Sbjct: 466 ------------SYESEVTVLATDTELVDALSDGERGTIFVEKTPFYATSGGQEADKGII 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + DV K   G F H   V +G+++      L +D  NR   + NHSATHLLH
Sbjct: 514 RTADGEFIVEDVVKLMGGKFGHIGHVSKGMIKVGDKAALEVDTDNRMLSANNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  D LRFD TH   +T  ELK +E  VN+ I   L V  + M
Sbjct: 574 KALRMVLGNHVEQAGSSVNADRLRFDFTHFSALTEEELKKVEAIVNEQIMNCLNVKVQNM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A  +GAAAL G KY   VRVVS+     G  S   CGGTHV++TG I    I+SE+
Sbjct: 634 PIEEAKKTGAAALFGEKYGSIVRVVSM-----GDFSIEFCGGTHVANTGVITAFKILSET 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RRIEA+T +    +    +EKL   A  LK +   +  ++  +  E + L  ++
Sbjct: 689 GVAAGVRRIEALTSKGLLKYYDELEEKLHEAAKLLKAAPDKLTDKISHLQAENKALHSEV 748

Query: 773 IHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +       ++ +   V  ++  + +VD   L+ + D L+KK+  GII++  
Sbjct: 749 ESLKSKLAQDAMGDVMDQVVEVKGVKLLATKVEDVDMNGLRDLGDQLKKKLGEGIIVIAS 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + + K S++   T+  +D+  +A +L +  A ++ GGGGGGRP+MAQ+GG N    D+A
Sbjct: 809 AT-DGKVSLMATATKGAIDKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPAGMDEA 866

Query: 889 IAGVASFLK 897
           IA  A  L+
Sbjct: 867 IAKAAEVLE 875


>gi|29375946|ref|NP_815100.1| alanyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227518645|ref|ZP_03948694.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227553175|ref|ZP_03983224.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229550130|ref|ZP_04438855.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972907|ref|ZP_05423493.1| alanyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255975962|ref|ZP_05426548.1| alanyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256762386|ref|ZP_05502966.1| alanyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958870|ref|ZP_05563041.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256965234|ref|ZP_05569405.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257419191|ref|ZP_05596185.1| alanyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257422731|ref|ZP_05599721.1| alanyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|307271131|ref|ZP_07552414.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307273337|ref|ZP_07554582.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277483|ref|ZP_07558575.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307279186|ref|ZP_07560244.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312952383|ref|ZP_07771258.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|41018198|sp|Q835J8|SYA_ENTFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29343408|gb|AAO81170.1| alanyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227073902|gb|EEI11865.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227177701|gb|EEI58673.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229304716|gb|EEN70712.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963925|gb|EET96401.1| alanyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255968834|gb|EET99456.1| alanyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256683637|gb|EEU23332.1| alanyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256949366|gb|EEU65998.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256955730|gb|EEU72362.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257161019|gb|EEU90979.1| alanyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257164555|gb|EEU94515.1| alanyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|306504311|gb|EFM73523.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306505748|gb|EFM74926.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306509864|gb|EFM78889.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306512629|gb|EFM81278.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310629767|gb|EFQ13050.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315033782|gb|EFT45714.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036867|gb|EFT48799.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315153346|gb|EFT97362.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155877|gb|EFT99893.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315157956|gb|EFU01973.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315170069|gb|EFU14086.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315575565|gb|EFU87756.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315579993|gb|EFU92184.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309A]
 gi|323480614|gb|ADX80053.1| alanyl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327535020|gb|AEA93854.1| alanine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329571430|gb|EGG53117.1| alanine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 880

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817
            ++      K   QL     N +     K + D+N + +I ++V   D  +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|21220002|ref|NP_625781.1| alanyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256788900|ref|ZP_05527331.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289772786|ref|ZP_06532164.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|22096206|sp|Q9KXP9|SYA_STRCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|8249960|emb|CAB93381.1| alanine tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702985|gb|EFD70414.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 890

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/921 (38%), Positives = 513/921 (55%), Gaps = 76/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSAQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA ++W  + G+ +++I R+   DN+WSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYQDDDEAERIWHDVVGVPSERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+     K+E  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEEFEILGELPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I  + ++TG+ Y       V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYEIDTSMAVINKATELTGVAYGDAQASDVSLRVVTDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE+  
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIEKVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  +S        +L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEENAFLKTLKAGTNILDTAVSDTKASGGTVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G      +  + +K GAT F+GY        
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADKAGATDFVGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T   S+IV  I+  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 469 --------------TDTESESTIV-GILVDGASSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   +  G  +++ D QK   G++VH  +V+ G +        +ID + R+ ++  H
Sbjct: 514 GDTGRIRVDTGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDDRRRKAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A S L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVAQLQELIK-------GRPEELPEKV 741

Query: 768 RKL--QLIHAKRKLQ-------LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMD 814
             +  +L  A+++++       L           DV  ++ +  +V     + +L+ ++ 
Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAGGLADSAKDVRGVALVTGQVPDGTTADDLRKLVL 801

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871
            ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGGG+
Sbjct: 802 DVRGRIQGGRAAVVALFTTVNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGK 860

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           P +AQ GG N      A+  V
Sbjct: 861 PDVAQGGGQNAAAIGDAVDAV 881


>gi|295094821|emb|CBK83912.1| alanyl-tRNA synthetase [Coprococcus sp. ART55/1]
          Length = 887

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 348/901 (38%), Positives = 514/901 (57%), Gaps = 44/901 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEF +  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ AD+I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVDADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G++YE ++   V+ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   +  E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELSEKKEYIFNKIDKEEESFN 360

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L   +  +    +++L+GD AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 KTIDTGLAILKDYIDETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEILEEEGIE-VDEDR 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + +  Q+  AR A       G    ++  L      ++F+GYD L             
Sbjct: 420 FTECMNIQKETARKARKTTTYMGADATVYEQLPVDM-TSEFVGYDKL------------- 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
             K  I   + +++ V     +  ++ + VS G +  V+  +TPFYA  GGQ+GD G   
Sbjct: 466 TYKSTI---SAITTEVGEGDDKKSVLADTVSEGAQASVIVPETPFYATMGGQIGDKGIIK 522

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +     + D  K   G   H   VE G L       LT+D +NR  +  NHSATHLL  
Sbjct: 523 TENGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQR 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + P  LRFD +H + +T  E+K +ED VN+ I  ++PV T +M+
Sbjct: 583 ALKMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDIPVCTDVMS 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  +GA AL G KY ++VRVVS+     G  S  LCGGTHV+STG I    I+SE+ 
Sbjct: 643 VDEAKETGAMALFGEKYGEKVRVVSM-----GDFSKELCGGTHVASTGAIKTFKIISEAG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG RRIEA+T   A  +    +++L   A   K     V  R+E++  E ++L   + 
Sbjct: 698 VAAGTRRIEALTSVGALDYYRNVEQELMDAAKAAKTDIYGVASRIEQLLAEVKELTNENK 757

Query: 776 KRKLQLNVE---DLSCHKIAD--VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K ++  E   D+    I    +  ++  I + D   L+++ D  + K+   +++L   
Sbjct: 758 KLKDKMAKEAAGDVLSSAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSVVVLAS- 816

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +K+ K +++ + T+  + +  +A ++ +  A ++ GGGGGGRP+MAQ+GG N +  + A+
Sbjct: 817 AKDGKVNLIAMATDGAVAKGAHAGNIIKAVAGLV-GGGGGGRPNMAQAGGKNPDGIEAAL 875

Query: 890 A 890
           A
Sbjct: 876 A 876


>gi|310829304|ref|YP_003961661.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308741038|gb|ADO38698.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 879

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 343/910 (37%), Positives = 524/910 (57%), Gaps = 56/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  L S  L+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   LNEIREKFLAFFESKGHLRLKSFPLVPINDKSLLLINSGMAPMKPYFTGDEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+  T+  ++D  
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFCTEVMEMDPE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++Y+++Y +DEEA  +W    G+  ++I+R+   DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 KIYVSIYLDDEEAHDIWHDEIGVPEERIVRLGKEDNFWEHG-LGPCGPCSELYYDRGEEY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+E WNLVF QF++  +     L   +IDTGMGLER+AT++Q   
Sbjct: 181 GCGSPDCAPGCECDRYVEFWNLVFTQFDKDEEGNYNPLANPNIDTGMGLERLATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N ++ID   H++    +  G+KY  N  + V+ RVI DH+RS +F+IADG++P NEGRGY
Sbjct: 241 NIFEIDTIGHILNYICKKAGVKYGENAQDDVSIRVITDHVRSVTFMIADGVMPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  E  +  +   +      AYPEL + +  I++ +R E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGMQELFLYDVAKEVVRVSADAYPELAEKQDYIQKLIRIEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL LL+  L  L + E  +  G  AFKLYDT+G P D+ ++I+  RGL  I    
Sbjct: 361 ETIDQGLSLLEKELDSLIEQEEKVFPGQGAFKLYDTYGFPYDLTKEIVEERGLTLI-ASE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIW----FSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           F +A++EQR RAR       + +   +W    F+        +F+GY+ L          
Sbjct: 420 FEEAMQEQRERARKAR----AESELAVWADDPFNPLGPDALVEFVGYENLEA-------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       NG    +  ++   E+V E  +G+ V V+ D+T FYAE+GGQ+GD G 
Sbjct: 468 ------------NGK---IIGLISGEELVSEVHAGEDVLVLLDKTSFYAESGGQVGDKGQ 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +     +++TD +K +    +H+  V  G  +    +   ++ + R     NH++THLL
Sbjct: 513 IVSGDRVIEVTDCKKGSLSRHIHYGKVVSGTFKMGEEVTTKVNRELRAATQRNHTSTHLL 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS ++PD LRFD  H +P+T  E + +E+ VN  I + + V    
Sbjct: 573 QKALKQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTHEEKRQVEEIVNKAILEAMDVAIFE 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + +DA + GA AL G KY + VRVV V     G  S  LCGG H++++ ++ +  I+SE
Sbjct: 633 TSIDDARSMGAMALFGEKYGEVVRVVKV-----GDFSIELCGGCHITNSAQVGMFKILSE 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + + AGIRRIEA TG  A  H+   D+ L   A  LK +  +++ +V E+ E+ +  + +
Sbjct: 688 TGVAAGIRRIEAATGMNAVHHVEQMDDTLLETAEALKTNPDHLLEKVTELAEQSKHKEKV 747

Query: 774 --HAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828
               K K   N+      K+  ++ +   I+E   VD +EL+++ D L+ ++ SGI++L 
Sbjct: 748 INELKHKFAGNMVMDIHQKVTVIDGVQTTIAEVEGVDMEELRNISDMLKDRMGSGIVLL- 806

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G   ++K + +   T+D+L++ F+A  L +  A++  GGGGGGRP MAQ+GG    K  +
Sbjct: 807 GTRGKEKVNFIATATKDILNKGFHAGKLIKEVAQI-AGGGGGGRPDMAQAGGKKPEKLGE 865

Query: 888 AIAGVASFLK 897
           A+      +K
Sbjct: 866 ALEKAKEIIK 875


>gi|315150647|gb|EFT94663.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 880

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINETFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817
            ++      K   QL     N +     K + DVN + +I ++V+ K   +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|307298258|ref|ZP_07578062.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916344|gb|EFN46727.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 869

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 364/918 (39%), Positives = 537/918 (58%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR ++L+FF+   H+ L S+SLIP NDP LMFT +GMVPFK IF G+ +P Y+ VTT 
Sbjct: 7   AEIRESYLKFFESKDHKRLQSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYRRVTTC 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND++NVGRT RH TFFEMLGNFSFG YFK   I+ AW+ +T+  +L + R
Sbjct: 66  QKCVRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKRETIKWAWEFVTEYLNLPENR 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE-- 181
           L+++VY +D+EAF +W+   G+   KIIR+   DN+W  A  +GPCGP SEIF D+G   
Sbjct: 122 LWVSVYLDDDEAFSIWRDEVGIPEKKIIRLGKKDNWWGPAGPSGPCGPDSEIFIDRGHGD 181

Query: 182 -------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                  C P    G      R++E WNLVF +F Q  +     L + +IDTG GLER A
Sbjct: 182 NCPDPENCSPACDCG------RFLEFWNLVFTEFNQDEEGNLTYLERKNIDTGFGLERAA 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
           ++LQ+  +N+D DLF  +I+  E++ G+KY+   G++I + +VI DH RS +F+++DGIL
Sbjct: 236 SILQDVDSNFDTDLFIPIIKKIEEILGIKYKEKPGSDI-SIKVIADHARSVAFMVSDGIL 294

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ ++ LLGY+ P +  ++  +   MG+ YPEL Q     +E  
Sbjct: 295 PSNEGRGYVLRRILRRAVRHSSLLGYSSPFLYRIVETVADHMGNVYPELRQRLSFTQEIT 354

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+ERF  TL  G   L  VL  + K E L+G   F L+DT+G PL+++++I+   G+ 
Sbjct: 355 LKEEERFLSTLVNGEKRLKSVL--VDKKE-LSGPELFMLHDTYGFPLELVEEIVAGTGVT 411

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-------GATQFIGYDLLR 464
            +D   + + +  QR RAR  ++G      ++ + S  E Y       G ++F GY    
Sbjct: 412 -LDKEGYEREMALQRERAR-EAMG------DREYLSNVEAYSTIFPVTGNSKFTGY---- 459

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            S+F  ED+                S + AI+++G+ VE    G+  +++F++TPFY E 
Sbjct: 460 -SRF--EDK----------------SKIVAILKEGDAVETLSKGETGDLIFEKTPFYPER 500

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ DTG    D    ++  V    + + VH A VE G L       L++D   R+ ++
Sbjct: 501 GGQVTDTGLIRTDNASAKVERVFIPYQEMIVHRAFVEEGALHVGDKAWLSVDEDRRKAIT 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q+GS + PD LRFD +H +P+++ EL  +E+ VN+ I 
Sbjct: 561 RNHTATHLLHAALRKVLGEHVHQSGSLVQPDRLRFDFSHFQPLSTDELNEVEEIVNEEIL 620

Query: 645 QNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +   VV +     D I      AL   KY D+VRV+SVE       S  LCGGTHV +TG
Sbjct: 621 K-AKVVDKAEKSFDEIKGQDVMALFEEKYGDKVRVISVE-----GFSRELCGGTHVDNTG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI L  I+S++S+ AG RRIEAITG+ + ++      + K++   L+V +  ++ R++ +
Sbjct: 675 EIGLFKILSDTSVAAGTRRIEAITGKTSLNYFRNLFNRQKTIREVLEVPEDLIIQRLQGV 734

Query: 764 WEEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818
             E +    ++   K KL L+ + L   K   VN    +I  V+   S  L++  D L  
Sbjct: 735 LNELKSGGQEIKRLKEKL-LSGDSLMKDKKMIVNGTKLLIRRVENAPSSALRNGADVLLS 793

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K   GI+++     E   S ++ V + L D+FNA ++AR  A+ L GGGGGGRP  AQ+G
Sbjct: 794 KEGGGIVIIFN-ELEDSVSFVVKVEKKLTDKFNAGEIARKIARDL-GGGGGGRPDFAQAG 851

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K    I  +  +L
Sbjct: 852 GKDLSKLQTLIERIDEYL 869


>gi|227551394|ref|ZP_03981443.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330]
 gi|257895992|ref|ZP_05675645.1| alanyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293377450|ref|ZP_06623652.1| alanine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293570502|ref|ZP_06681557.1| alanyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227179513|gb|EEI60485.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330]
 gi|257832557|gb|EEV58978.1| alanyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|291609448|gb|EFF38715.1| alanyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292643968|gb|EFF62076.1| alanine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 880

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 363/930 (39%), Positives = 530/930 (56%), Gaps = 83/930 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+   N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L+G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLSGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   ++  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEIAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGRP MAQ+GG N      A+     +L +
Sbjct: 850 GGRPDMAQAGGKNPAGIPDALKAAKEWLAQ 879


>gi|257887497|ref|ZP_05667150.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257823551|gb|EEV50483.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733]
          Length = 880

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 363/930 (39%), Positives = 530/930 (56%), Gaps = 83/930 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+   N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L+G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKSENGTTLSGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   ++  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEIAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGRP MAQ+GG N      A+     +L +
Sbjct: 850 GGRPDMAQAGGKNPAGIPDALKAAKEWLAQ 879


>gi|315160222|gb|EFU04239.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0645]
          Length = 880

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT    S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELT--YDSELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817
            ++      K   QL     N +     K + D+N + +I ++V   D  +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPEGIADALAEVENWL 877


>gi|294793973|ref|ZP_06759110.1| alanine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455543|gb|EFG23915.1| alanine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 871

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 344/909 (37%), Positives = 504/909 (55%), Gaps = 61/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P  + +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+ Y  + N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 KTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++EQR RAR                 +KE               +K    D   L
Sbjct: 414 GFEAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
             +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G
Sbjct: 446 KDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ 
Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I
Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFIGSFRLTSEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDE-KLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
            +G+RRIEAITG RA      QD   ++ +AS LK     +  R+ ++  E ++   +L 
Sbjct: 681 GSGVRRIEAITG-RAALEAAKQDRLTIERMASELKTKSPQIEERLHQVLTEAKETVKELE 739

Query: 774 HAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVG 829
             ++++              + DV F+   +      EL+ + D  L K   SG++++  
Sbjct: 740 QIRKEVSAAGAADIIAGKVMVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGA 799

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K  +A
Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEA 858

Query: 889 IAGVASFLK 897
           +      LK
Sbjct: 859 LKAGGEALK 867


>gi|160939113|ref|ZP_02086464.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438076|gb|EDP15836.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC
           BAA-613]
          Length = 887

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 345/899 (38%), Positives = 512/899 (56%), Gaps = 50/899 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI   W+ LT    LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTDVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ A++I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLDDDEAFGIWNKEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEAF 188

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RYIE+WN VF QF+         L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    Q+   +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCQLAHTEYQKDHETDVSLRIVTDHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     +  L   +       YPEL + + +I + L  E+E+F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAGLSETVIELSKDGYPELEEKQAMIFKVLSEEEEKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K  ++ L+G  AFKLYDT+G PLD+ ++IL  RG   +D   
Sbjct: 369 KTIDQGLSILGEMQDEMQKTGNKCLSGANAFKLYDTYGFPLDLTKEILEERGCT-VDEDG 427

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F  A++EQ+ +AR A       G    ++ S+      T+FIGYD L             
Sbjct: 428 FAAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSV-TTEFIGYDRLT------------ 474

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S V  +  + E+V+    GQK  ++ +QTPFY   GGQ GDTG    
Sbjct: 475 -----------ADSRVTVLTTEEELVQALTDGQKGTIIVEQTPFYGTMGGQQGDTGVISN 523

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    ++ D      G   H  ++ +G+ +   ++ L++   NR     NHSATHLL  A
Sbjct: 524 ENGAFKVEDTIHLQGGKVGHVGVMTKGMFQVGENVTLSVCAHNRALTCKNHSATHLLQKA 583

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +    LRFD TH   +T  E+K +E+ VN  I  +LPVVT++M  
Sbjct: 584 LRKVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPDEIKKVEELVNQEIQASLPVVTQVMTL 643

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  +GA AL G KY D+VRVV +     G  S+ LCGGTHV +TG I    I+SE+ I
Sbjct: 644 EEAKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVPNTGTIAYFKIISEAGI 698

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+T +    H    +E+L+  A   K +   +  +++ + EE + L   + K
Sbjct: 699 AAGVRRIEALTSEGLMKHYQEVEEELQEAARTAKTTPSALTSKIQSLLEEIKTLHSENEK 758

Query: 777 RKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  + L     ++ +VN    ++  ++ VD   ++++ D L+ K+  G+I+L    
Sbjct: 759 LKSKLANDSLGDVMSQVKEVNGLKVLAARVAGVDMNGMRNLGDQLKDKLGEGVIVLA-CE 817

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ K +++   T+    +  +A +L +  A ++ GGGGGGRP+MAQ+GG N    D A+
Sbjct: 818 QDGKVNLMATATDSAQKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPAGIDDAL 875


>gi|299535706|ref|ZP_07049027.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298728906|gb|EFI69460.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 886

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 344/921 (37%), Positives = 510/921 (55%), Gaps = 72/921 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +T  QK
Sbjct: 6   IRRMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRITNAQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
            +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K    D   
Sbjct: 66  SIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMGFDPAL 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180
           L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+G    
Sbjct: 122 LSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGVEYG 178

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E  P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +V+Q
Sbjct: 179 SDENDPEMYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284
               N+D DLF  +I+  E+    KY+    V+               +VI DH+R+ +F
Sbjct: 237 NVPTNFDTDLFMPIIEKIEEFANRKYKRPGEVDLNEIFGSEEDINTPFKVIADHIRTVAF 296

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ +  
Sbjct: 297 AIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVTEKC 356

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401
             I+  +++E+ RF +TLD GL + + V+      G D I   D AF+LYDT+G P+++ 
Sbjct: 357 EFIQRVIKNEEIRFHETLDGGLAIFNEVVESQKAAGHDYIPGAD-AFRLYDTYGFPIELT 415

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           ++     G+  +D   F +A+EEQR RARA    + S   +     L     A++F+GYD
Sbjct: 416 EEYAEEVGMK-VDHEGFEEAMEEQRERARAARQDVDSMQVQN--EVLANLTVASEFVGYD 472

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L                        V++ + A++  G++ + A  GQ+  V+  +TPFY
Sbjct: 473 TLT-----------------------VNTEIAAMIVNGQVAKVASEGQEALVILAKTPFY 509

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GGQ+ D+G    D     + DVQK   G  +H  +VE G +  E ++   ++  +R 
Sbjct: 510 AEMGGQIADSGTISNDSFTAVVKDVQKAPNGQPLHTVVVESGEMHVEDAVQAVVNRDDRN 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  VN+
Sbjct: 570 LIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  ++ VV      ++A A GA AL G KY D VRVVS+     G +S  LCGG HV  
Sbjct: 630 KVWDDIEVVIEEKGIDEAKAMGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKR 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +V+
Sbjct: 685 SSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEAVKEEEALLNDAAALLKANAKDIVTKVQ 744

Query: 762 EIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +  +Y++LQ     L       Q      +   I DV  +S  +   D+ +L+ +MD L
Sbjct: 745 ALQADYKELQRENEALSQKIANAQAGAIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMDDL 804

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + K+   +I+L  +  +K      V  E +   ++A ++ ++ A+   GG GGGRP MA 
Sbjct: 805 KAKMPKAVIVLGAVDGDKVMLCAGVSKELVGGNYHAGNIVKMVAEAC-GGKGGGRPDMAM 863

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +G  + +K D+A+  V  ++K
Sbjct: 864 AGAKDASKLDEALLSVYDYVK 884


>gi|312898889|ref|ZP_07758277.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620051|gb|EFQ03623.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 868

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 350/903 (38%), Positives = 504/903 (55%), Gaps = 71/903 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF+   H  L S SL+P NDP+L+   +GM P K  FTG+  P    VTT 
Sbjct: 7   NEIRKAYLDFFESKKHLKLHSFSLVPENDPSLLLIGAGMAPLKPYFTGKLVPPSYRVTTS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+  +LD  +
Sbjct: 67  QKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFLTEVLELDTNK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY EDEEA+ +W  I GL+ ++I ++   DNFW + E GPCGP SEIF+D G    
Sbjct: 123 LYVTVYPEDEEAYDIWHNIVGLADERIFKL--EDNFWEIGE-GPCGPDSEIFYDLGPERG 179

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   + +RY+EIWNLVF QF +        L K +IDTG GLER+A+V+Q+K +
Sbjct: 180 CGKPTCNVGCDCDRYLEIWNLVFTQFNKTKDGSYEPLEKKNIDTGAGLERLASVIQQKES 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           N++ DL   ++Q    V    Y      +  +VI DH+R+ + +I DGILP+NEGRGYVL
Sbjct: 240 NFETDLLFPIMQRVIDVCHGDYNNKEQKIAVKVIGDHIRAVTMMIGDGILPSNEGRGYVL 299

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ + R+LG  E  +  L+  +      AYPEL + K LI+  + +E+ +F  T
Sbjct: 300 RRILRRAVRFGRVLGIEEAFLADLVDIVIDMYKEAYPELAERKELIKTVIATEEAQFSAT 359

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L +GL LL+ ++       +L G+  FKLYDT G P+++ ++I+   G+  ID   F++A
Sbjct: 360 LAQGLELLNAMIEDADGTGVLAGEKVFKLYDTFGFPVELTEEIVQEHGMT-IDHDGFDKA 418

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ Q+ RARA    +                             +K    D   L Q   
Sbjct: 419 MKAQQERARAARAKV----------------------------SAKVATPDTTGLDQSAL 450

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
           +   N V++ V  I   G  VE A     + ++ D+TPF+AE GGQ+GDTG   G   + 
Sbjct: 451 VKDENAVNARVVLIGIDGAAVERAEKDTAITIILDKTPFHAEGGGQIGDTGYITGPSGKA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++TD +  A G+    AIV  G L     + +T+D      ++ NH+ATHLL  AL  +L
Sbjct: 511 EVTDTKSLANGLTYMIAIVTEGSLSRGDEVDITVDKVRNLDIARNHTATHLLQAALRKVL 570

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+HV+Q GS +TP+ LRFD TH  P+T+ EL  +E  VN  I +N+ +    M  +DAI 
Sbjct: 571 GTHVNQAGSLVTPERLRFDFTHFSPMTNEELAEVEKEVNRQIMKNVDLEIEEMPVDDAIK 630

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY D VRVV+V        S  LCGG+HV +T  I    IV ES    GIR
Sbjct: 631 KGAMALFGEKYGDIVRVVNVPG-----FSCELCGGSHVPNTSVIGSFRIVGESGTGTGIR 685

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG+ A    +     L+  A+ LK  + ++  ++E         QL+ A ++ + 
Sbjct: 686 RIEAVTGKAAHERAVADAVLLQEAATLLKSKEADIPAKIE---------QLLTALKEAER 736

Query: 782 NVEDLSCHKIADVNFMSHIISE--------------VDSKE-LKSVMDALQKKIQSGIIM 826
            V  LS HK+A  +    + ++              VDS E L+ + D +  K+  GI++
Sbjct: 737 EVAQLS-HKLATSSLDDILAAKEEIHGVSVTAASVTVDSAEGLRDMADMVLDKV-GGIVL 794

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  +K + V  V  E     ++A  + + +A    GGGGGGRP MAQ+GG +  K +
Sbjct: 795 LGAVQGDKVSFVCKVDKELTKQGYHAGKIVKAAAVAA-GGGGGGRPDMAQAGGKDPQKLE 853

Query: 887 QAI 889
           +A+
Sbjct: 854 EAL 856


>gi|256618959|ref|ZP_05475805.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256598486|gb|EEU17662.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
          Length = 880

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817
            ++      K   QL     N +     K I +VN + +I ++V+ K   +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDIKEVNGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|303232757|ref|ZP_07319442.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302481243|gb|EFL44318.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 883

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 316/831 (38%), Positives = 480/831 (57%), Gaps = 53/831 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF+  G +  PSSSLIP +DP+L+  N+GM  FK  + G +       T
Sbjct: 10  TTAQIRENFLQFFESKGCKRYPSSSLIP-DDPSLLLANAGMNQFKEYYQGIKTMREIGAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QKC+R     ND++N+G   RH +FFEMLGNFSFGGY K +AI  AW+ +T  +   L
Sbjct: 69  SCQKCLRT----NDIENIGDA-RHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPEHLGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY+TV+  D+EA +LW++  G+    I R+   DNFW+   TGPCGPCSEI+FDQG
Sbjct: 124 PKDRLYVTVFTNDDEACELWQE-QGVDLSHISRLGEEDNFWAAGPTGPCGPCSEIYFDQG 182

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G  PG  ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLER+A ++Q +
Sbjct: 183 PEFEGEKPG--DDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERIAAIMQHQ 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            +NY+ D+ + LI   E+++  +Y      +   R++ DH R+ +F+I DGILP NEGRG
Sbjct: 241 GSNYEGDVLRTLIAVGEKLSNKRYHETAATDKSLRILADHARACTFMIGDGILPGNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RLLG     M      +   M ++YP+L + K  I+  + +E++RF
Sbjct: 301 YVLRRLLRRAIYHGRLLGIRGEFMRTYTHEVMRLMATSYPQLTEGKDRIDAIVSAEEQRF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD G  LL+  L+ L   + L+G+VAFKL+DT+G P+D+  +I         D+ +F
Sbjct: 361 CATLDAGEALLNKELAQLPSGKPLSGEVAFKLHDTYGFPIDLTCEI-AENAQHPTDMDTF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N  +E+Q++RARA +     G    IW SL ++   T+F+GY     ++   +D +VL  
Sbjct: 420 NALMEDQKARARAQANRDAWGQANSIWASLSDELSETEFLGY-----TQNSCDDARVL-- 472

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537
                          A+V+ G +V  A  G  V+V+ D+TPFY E GGQ+GDTG    G+
Sbjct: 473 ---------------ALVRDGALVPSASCGDVVDVILDKTPFYGERGGQVGDTGTLRCGE 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + L + D Q +A  + VH   V++G +    ++   ID   R  +  NH+ATHLL  AL
Sbjct: 518 SV-LHVDDTQHQAHILIVHTCTVQKGSIAKGDTVSAQIDVTRRELIRRNHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS + PD LRFD TH + +T  ++  +E  VN  I    P+VTR++   
Sbjct: 577 KQVLGKHVSQAGSLVAPDRLRFDFTHFEALTRDQIDQVEAIVNREIFAAEPMVTRVVPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  + A AL    Y+  VR+V     +  V+S  LCGGTHV +T +I    I+SE+S+ 
Sbjct: 637 EARKTDAIALFDEMYDADVRIVQTGSSEDAVYSRELCGGTHVRNTADIGYFKIISETSVG 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + +RR+EA+T   A  ++  +  +L  LAS LK  + +V+ RV+++     K  L  A +
Sbjct: 697 SNVRRLEALTSCGAYEYVDAKLSELGQLASMLKCREDDVLARVDQL-----KSSLSAADK 751

Query: 778 KLQLNVEDL----------SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           KL+  +             S +  +    +   +  V++K+L+S+ D +++
Sbjct: 752 KLKAALSGSSSDQVSSAVSSAYNKSGYKLVIAHVQHVEAKDLRSMWDGIRQ 802


>gi|293569836|ref|ZP_06680923.1| alanyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587584|gb|EFF19461.1| alanyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 880

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 362/913 (39%), Positives = 525/913 (57%), Gaps = 83/913 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK +AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNKAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+   N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   V+  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPN 881
           GGRP MAQ+GG N
Sbjct: 850 GGRPDMAQAGGKN 862


>gi|302517973|ref|ZP_07270315.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426868|gb|EFK98683.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 889

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 353/913 (38%), Positives = 518/913 (56%), Gaps = 82/913 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     T+V
Sbjct: 4   AEIRRRWLRFFEERGHKVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT       F 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + K +  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + +I  + ++TG+ Y   G + V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  +  + +    +L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETRVTGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G   
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG--- 473

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             E R V        L +GV +              A  G +VEVV D+TPFYAE GGQ+
Sbjct: 474 --EARIVGL------LVDGVPA------------PAASEGDEVEVVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++  H
Sbjct: 514 GDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A  +
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLAHEM 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVK-------GRPEELPEKI 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ      +  K  DV+  + +  +V     + +L+ +
Sbjct: 742 AGMLGKLKDAEKEIEKFRAEKVLQAAAGLAAGAK--DVHGTALVTGQVPDGTTADDLRRL 799

Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +  ++ +I   +  ++ L  ++  +  +V +   E   +R F A DL R +AK L GGGG
Sbjct: 800 VLDVRGRIPGDRPAVVALFAVTGGRPVTV-VATNEAARERGFKAGDLVRTAAKTL-GGGG 857

Query: 869 GGRPHMAQSGGPN 881
           GG+P +AQ GG N
Sbjct: 858 GGKPDVAQGGGQN 870


>gi|315640863|ref|ZP_07895962.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483402|gb|EFU73899.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 880

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 346/921 (37%), Positives = 523/921 (56%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQVRQLFLDFFRSKGHTVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI  AW+ LT       D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKEDAIHFAWEFLTSPEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D EA ++W +  GL+ + II I   DNFW +   GP GP SEIF+D+G  
Sbjct: 123 EKLYVTVYPKDTEAKRIWSEEIGLTPEHIIEI--EDNFWDIG-AGPSGPDSEIFYDRGPE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMGLER+ +
Sbjct: 180 YLDIAEDDPENFPGG--ENERYLEIWNLVFSEFNHKPDNTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           ++Q    N++ DLF  +I + E+++   + G+++   V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQNAPTNFETDLFLPIIHSVEELSQGVHYGDSLQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE+++ +  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGQKLGIQQAFLYKLVPVVGHIMESYYPEVLKQQAFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 NEEERFHETINEGLAILNEVIEDVKANNRTTLAGQAIFKLYDTYGFPVELTEEVAEDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +D + F + ++ QR RARA      S+G+ S     I          + ++GY  L  
Sbjct: 418 K-VDHVGFEKEMQAQRDRARAGRSKEQSMGVQSTLLTDIKVE-------SDYVGYSDLEA 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+     V++   G   +++F +TPFYAE G
Sbjct: 470 -----------------------KSALVLIISDDAFVKKIDEG-SAQLIFAKTPFYAEMG 505

Query: 526 GQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+ DTG  +     I   +T+V+K   G F+H   V +G L       L ++     + 
Sbjct: 506 GQVADTGIVVNSEGMIVADVTNVKKAPNGQFLHTVTV-KGQLIEGTEYFLQVNTAKHNKT 564

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATH+LH AL  +LGSH +Q GS + P+ LRFD TH   +T  EL  +E  VN+ I
Sbjct: 565 IKNHTATHMLHKALKEVLGSHANQAGSLVAPEHLRFDFTHFGQVTPEELVKMEQIVNEKI 624

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + LPVVT   + + A A GA AL G KY   VRVV++        S  LCGG HV +T 
Sbjct: 625 WEALPVVTVETDIDSAKAMGAMALFGEKYGHDVRVVNI-----ADWSIELCGGNHVKNTE 679

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762
           +I L  IVSES I AG+RRIEA+T + A      Q+E+LK +AS +K  Q   VV +V++
Sbjct: 680 DIGLFKIVSESGIGAGVRRIEAVTSKEAYLLAREQEEQLKQVASLVKSPQLKEVVSKVDQ 739

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKSVMDALQ 817
           + ++ ++ Q  +     +L  +  S     I +VN ++++ S+V+ K   +L+ + D  +
Sbjct: 740 LQQQLKEAQKENDTLSTKLANQQASDIFTDIKEVNGVTYVASQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   + E K ++L+ ++E  + + + A +L + ++ KV   GGGGGRP MA
Sbjct: 800 QKAISDVLVLATAADE-KVNLLVAMSEQAIQKGYKAGELVKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V+ +L
Sbjct: 857 QAGGKNPAGIPDALAAVSEWL 877


>gi|257878215|ref|ZP_05657868.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257881004|ref|ZP_05660657.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257889586|ref|ZP_05669239.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260559260|ref|ZP_05831446.1| alanyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293559338|ref|ZP_06675880.1| alanyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294622256|ref|ZP_06701310.1| alanyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939752|ref|ZP_07846974.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314941747|ref|ZP_07848624.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948292|ref|ZP_07851684.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314952380|ref|ZP_07855387.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314992001|ref|ZP_07857454.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995701|ref|ZP_07860791.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|257812443|gb|EEV41201.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257816662|gb|EEV43990.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257825946|gb|EEV52572.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260075017|gb|EEW63333.1| alanyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291598227|gb|EFF29322.1| alanyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291606702|gb|EFF36094.1| alanyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590092|gb|EFR68937.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593436|gb|EFR72281.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313595497|gb|EFR74342.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313599425|gb|EFR78268.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313640981|gb|EFS05561.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645273|gb|EFS09853.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 880

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 362/913 (39%), Positives = 525/913 (57%), Gaps = 83/913 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+ + N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   V+  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPN 881
           GGRP MAQ+GG N
Sbjct: 850 GGRPDMAQAGGKN 862


>gi|293553477|ref|ZP_06674105.1| alanyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291602354|gb|EFF32578.1| alanyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 880

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 362/913 (39%), Positives = 524/913 (57%), Gaps = 83/913 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+   N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   V+  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIITAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPN 881
           GGRP MAQ+GG N
Sbjct: 850 GGRPDMAQAGGKN 862


>gi|318057084|ref|ZP_07975807.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318077856|ref|ZP_07985188.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 889

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 353/913 (38%), Positives = 517/913 (56%), Gaps = 82/913 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     T+V
Sbjct: 4   AEIRRRWLRFFEERGHKVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT       F 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + K +  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + +I  + ++TG+ Y   G + V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G   
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG--- 473

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             E R V        L +GV +              A  G +VEVV D+TPFYAE GGQ+
Sbjct: 474 --EARIVGL------LVDGVPA------------PAASEGDEVEVVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++  H
Sbjct: 514 GDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A  +
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLAHEM 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVK-------GRPEELPEKI 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ      +  K  DV+  + +  +V     + +L+ +
Sbjct: 742 AGMLGKLKDAEKEIEKFRAEKVLQAAAGLAAGAK--DVHGTALVTGQVPDGTTADDLRRL 799

Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +  ++ +I   +  ++ L  ++  +  +V +   E   +R F A DL R +AK L GGGG
Sbjct: 800 VLDVRGRIPGDRPAVVALFAVTGGRPVTV-VATNEAARERGFKAGDLVRTAAKTL-GGGG 857

Query: 869 GGRPHMAQSGGPN 881
           GG+P +AQ GG N
Sbjct: 858 GGKPDVAQGGGQN 870


>gi|315174460|gb|EFU18477.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 880

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLHVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817
            ++      K   QL     N +     K + D+N + +I ++V   D  +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|257078902|ref|ZP_05573263.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294779572|ref|ZP_06744966.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|256986932|gb|EEU74234.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294453362|gb|EFG21770.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1]
          Length = 880

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 356/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+GE 
Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +
Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++    GL
Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDANGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +E QR RAR A S     G    +   +K +   ++F+GY         
Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+     V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ 
Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +   + DV+K   G F+H   V   +   ++   L +D + R ++  NH
Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +
Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I +
Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++   
Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817
            ++      K   QL     N +     K + D+N + +I ++V+ K   +L+ + D  +
Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875
           +K  S +++L   ++++K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MA
Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG N      A+A V ++L
Sbjct: 857 QAGGKNPAGIADALAEVENWL 877


>gi|229822862|ref|ZP_04448932.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271]
 gi|229787675|gb|EEP23789.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271]
          Length = 881

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 352/923 (38%), Positives = 534/923 (57%), Gaps = 79/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF +  H+++PS+SLIP NDPTL++ N+G+ P K  F G E P  + +  V
Sbjct: 7   ARIRQMYLDFFAEKQHQIIPSASLIPVNDPTLLWINAGVAPLKKYFDGTEVPDNRRLANV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----FDL 120
           QKC+R     ND++NVG T RHHT FEMLGN+S G YFK+  I  AW+ LT E    F+ 
Sbjct: 67  QKCIRT----NDIENVGYTARHHTLFEMLGNWSIGDYFKKEVIAWAWEFLTSERWLGFEA 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY T Y ED+E  ++WK+  G  AD ++ +   DNFW +   GPCGP +EIF+D+G
Sbjct: 123 D--KLYATYYPEDKETPEIWKQQPGFIADHLVAVA--DNFWDIG-AGPCGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ER++EIWNLVF +F          LP  ++DTGMGLER+
Sbjct: 178 QEFNNLAADDPENYPGG--ENERWLEIWNLVFSEFNHLPDDTYQPLPNKNVDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGIL 291
            +V+Q    NY+ DLF  +IQA E+V+G+ +   G+  V+ +VI DH+R+ SF I+DG L
Sbjct: 236 VSVIQNAKTNYETDLFVPIIQAIEKVSGVDFASAGDKQVSFKVIADHIRAVSFAISDGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGY+LRR++RR++ + R LG +   +  L+P +   MG+ Y EL +    +++ +
Sbjct: 296 PSNEGRGYILRRLIRRSVMHGRKLGISRSFLSELVPVIADIMGAYYQELTEQLAFVQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+ERF +T++ G   L+ ++++L  +   ++ G  AF+LYDT G PL++  ++  ++G
Sbjct: 356 LNEEERFHETIEGGEAHLNDLMANLKAEGKTVVPGAQAFQLYDTFGFPLELTVELADSQG 415

Query: 410 LAGIDIISFNQALEEQRSR-----ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
            + +D   F   +E QR R     ++  S+ + S   + I         A  F+GY+ L 
Sbjct: 416 FS-VDQEGFETEMEAQRQRARAARSKEESMQVQSDLLQNI-------TDAFDFVGYETL- 466

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                              +TN   + +KAIV     V++  + Q+  V F+++PFYAE 
Sbjct: 467 -------------------VTN---ATIKAIVLDEAKVDQLPAHQEGWVFFNRSPFYAEM 504

Query: 525 GGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+ D+G  + GD    Q+ DV+K  +G F+H        L    S  L +D   R + 
Sbjct: 505 GGQVADSGIILDGDQEVGQVLDVKKAPQGQFMHRIKTGEMPLTVGQSYTLEVDRAVRLKT 564

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLLH AL  +LGSH +Q GS + PD LRFD +H   +T  ELK IE  VN  I
Sbjct: 565 NQNHTATHLLHRALKVVLGSHANQAGSYVGPDRLRFDFSHFGKVTPEELKQIEAFVNQWI 624

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A +  V    M+ EDA A+GA AL G KY D VRVV++  E     S  LCGGTHV++T 
Sbjct: 625 ANSANVDIAEMSIEDAKATGAMALFGEKYGDVVRVVNIAGE-----SIELCGGTHVNNTN 679

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762
           EI    +++ES I AGIRRIEA+TGQ A +    Q E L+ + + LKV+Q + ++ R+E+
Sbjct: 680 EIGTFKLLAESGIGAGIRRIEALTGQAAVADYQAQAELLQEVQNHLKVAQASQLLPRLEQ 739

Query: 763 IWEEYRKLQL----IHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           + EE R+ Q     ++AK  LQ     +      + DV +++  +       ++ + D  
Sbjct: 740 LQEELRQAQAQVESLNAKL-LQAEAGQVFQDVQSVGDVTYVAINLGNQSVDGMRQMADIW 798

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +K+  S I++LV  S+E+K S+++ V E  L     A +L +  A ++ GGGGGG+P MA
Sbjct: 799 KKEAPSNILVLVA-SQEEKVSLMVQVDEQGLAAGLKAGNLIKPLAAIV-GGGGGGKPQMA 856

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG       + +A V++ + +
Sbjct: 857 QAGGKKPEAIPELLAQVSAVINE 879


>gi|154502472|ref|ZP_02039532.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149]
 gi|153796868|gb|EDN79288.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149]
          Length = 879

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 354/911 (38%), Positives = 527/911 (57%), Gaps = 58/911 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEEDEEAFEIWNKKMGIPAERIFRFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGHYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +D+D  K    H+ + ++   G   + +  ++ RVI DH RS +F+I+DGI+P+NEGR
Sbjct: 241 SIFDVDTLKALRDHICRLADTEYGKDAQAD--ISIRVITDHTRSVTFMISDGIMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  L   +       YPEL + K  I + +  E+++
Sbjct: 299 GYVLRRLLRRACRHGRLLGIEGSFIPELAQTVIEGSKDGYPELEEKKDFILKVIAKEEDQ 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  + + +  ++   L+G  AFKLYDT+G P+D+ ++IL  +G+  +D 
Sbjct: 359 FNKTIDQGLGILAEMTAKMEAEQTTTLSGADAFKLYDTYGFPIDLTKEILEEKGMQ-VDE 417

Query: 416 ISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F+ ++E QR  ARA    +  +G+  T  ++ S+     +T F+GY+           
Sbjct: 418 EGFHASMEVQRKTARAARGETNYMGADVT--VYESIDPSITST-FVGYE----------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              L  K PI +          +    EIVE    GQ+  V  ++TPFYA +GGQ  DTG
Sbjct: 464 --NLAWKSPITV----------LTSDTEIVEALSDGQRGTVFAEETPFYATSGGQEADTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H  +V +G+++T     L +D + R   + NHSATHL
Sbjct: 512 IIRTAEGEFKVEDTVKLLGGKIGHVGVVIKGMIKTGDQAELCVDAEKRALSARNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LG+HV Q GS +  D LRFD +H   +T+ EL+ +E+ VN+ I   LPV   
Sbjct: 572 LQKALRTVLGTHVEQAGSSVNEDRLRFDFSHFSAMTAEELQKVEEIVNEQIVAGLPVKVE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A  +GA AL G KY D VRVV++     G +S   CGGTHV +T EIM   I+S
Sbjct: 632 NMPIEEARKTGAQALFGEKYGDVVRVVNM-----GDYSIEFCGGTHVKNTNEIMAFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES + AG+RRIEA+T +    +    ++KL   A  LK +  N+  ++  +  E + L  
Sbjct: 687 ESGVAAGVRRIEALTSKGLIRYYDNLEKKLNEAAKVLKATPDNLAEKIAHLTAENKALHS 746

Query: 771 QLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   K KL Q  + D+     +I  V  ++  +  VD   L+ + D L++K+  G+++L
Sbjct: 747 EVESLKSKLAQDAMGDVMDQVQEIKGVKLLAAEVDGVDMNGLRDLGDQLKEKLGEGVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K S+++  T+  + +  +A +L +  A ++ GGGGGGRP+MAQ+GG N     
Sbjct: 807 AS-GNDGKVSLMVTATDAAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMAQAGGKNPAGIQ 864

Query: 887 QAIAGVASFLK 897
           +A+   A  L+
Sbjct: 865 EALKKAAEALE 875


>gi|257462579|ref|ZP_05626989.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317060231|ref|ZP_07924716.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313685907|gb|EFS22742.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 866

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 334/902 (37%), Positives = 517/902 (57%), Gaps = 62/902 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     VTT 
Sbjct: 5   NEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  +W+ +T+   L + +
Sbjct: 64  QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGLPKDK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G    
Sbjct: 120 LWVTVFTTDDEAEKIWIEECHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLGPAY- 178

Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           GG   S   +EG   RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++Q K
Sbjct: 179 GGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMVQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NN++ DL   L++ + ++T   Y  N     + +VI DH R+ +FLI DG++P+NEGRG
Sbjct: 239 ENNFETDLLFPLVEEAGRLTNSTYHENPEKDFSLKVITDHSRAVTFLIHDGVIPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+E+F
Sbjct: 299 YILRRILRRAVRHGRLLGQKELFLYKMVKKVVEQFAVAYPDLAANMENIQKIVKIEEEKF 358

Query: 359 GKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TLD+G+ L++  ++     GK + L+G++ FK+YDT+G P ++ ++I   +G+A +  
Sbjct: 359 SNTLDQGIQLVNEQIALALQAGKTK-LDGEITFKMYDTYGFPYELTEEICHEKGIA-VSQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + +EEQ+ +ARA    +     +       + +G T+F GY         +E  K+
Sbjct: 417 EEFLEKMEEQKEKARAARAVIMEKGQDSFIEKFYDTHGVTEFTGYHS------SQEKAKL 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           L  +   D T                         + ++FD+TPFYAE+GGQ+GD G   
Sbjct: 471 LNVRTREDGT-------------------------LLLIFDKTPFYAESGGQVGDRGMIF 505

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  + ++ DV+K+ E IF+H      G L+      L +D + R  +S NH+ATHLLH 
Sbjct: 506 SNAFQGKVLDVKKQKE-IFIHVVESISGELKEGEECSLEVDMKYRAAVSKNHTATHLLHK 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS +  + LRFD +H + +T  ++K +E+ VN+ I++ + V     +
Sbjct: 565 ALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIKLVEERVNEKISEAIAVEISHKS 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A A GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE  
Sbjct: 625 MEEAKACGAMMLFGDKYGDTVRVVDVP-----GFSTELCGGIHVENIGHIGLFKIVSEGG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLI 773
           I AG+RRIEA TG  A   +    E L+  A+ LK     +V +VE++ +E ++   ++ 
Sbjct: 680 IAAGVRRIEAKTGYEAYRFVEENMEILQKSATLLKTESSLLVEKVEKVLQEEKEKSREIA 739

Query: 774 HAKRKL-QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+ +   E L  H  ++A          +    +L+ ++D ++ K ++ I++L   
Sbjct: 740 SLKEKIAKQEAEALYSHMLEMAGAKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLTST 799

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S  +K S  + V++ L  ++ A +L ++ A++  GG GGG+P  AQ+GG +  K  +A+ 
Sbjct: 800 S--EKLSFAVGVSKALTSKWKAGNLVKILAEIT-GGKGGGKPDFAQAGGKDKTKIAEAME 856

Query: 891 GV 892
            V
Sbjct: 857 AV 858


>gi|261207793|ref|ZP_05922478.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566245|ref|ZP_06446677.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294616584|ref|ZP_06696360.1| alanyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|294617900|ref|ZP_06697509.1| alanyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|260078176|gb|EEW65882.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289161952|gb|EFD09820.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291590534|gb|EFF22267.1| alanyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|291595845|gb|EFF27129.1| alanyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 880

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 362/913 (39%), Positives = 524/913 (57%), Gaps = 83/913 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+   N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   V+  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPN 881
           GGRP MAQ+GG N
Sbjct: 850 GGRPDMAQAGGKN 862


>gi|225377640|ref|ZP_03754861.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM
           16841]
 gi|225210504|gb|EEG92858.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM
           16841]
          Length = 886

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 346/904 (38%), Positives = 508/904 (56%), Gaps = 54/904 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT 
Sbjct: 8   NELRRMYLEFFESKGHLKMNSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   L++ R
Sbjct: 68  QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVLGLEEDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFFD 178
           LY ++Y ED+EAF +W K  G+ A++I R   +      DNFW     GPCGPCSEI++D
Sbjct: 124 LYPSIYGEDDEAFNIWTKEVGVPAERITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 182

Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V
Sbjct: 183 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVV 242

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     +++G KYE + +  V+ R+I DH+RSS+F+I+DGI+P+N
Sbjct: 243 MQDVDSVFDIDTMKAIRDRVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSN 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E
Sbjct: 303 EGRGYVLRRIIRRAARHGRMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+D+GL +L+ +   +     ++L+GD AFKLYDT+G P+D+  +IL  +G   
Sbjct: 363 EEKFAKTIDQGLAILEDMEKEMIASGSKVLSGDNAFKLYDTYGFPMDLTSEILEEKGFT- 421

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR+ AR +         +   +   +    T+F+GYD L         
Sbjct: 422 IDEDGFKKAMEVQRTTARKNRKTTNYMGADATVYDEIDPSVTTEFVGYDKLE-------- 473

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S V  +  + EIVE    G+   ++ ++TPFYA  GGQ GD G
Sbjct: 474 ---------------TASTVTVLTSETEIVEALSDGEIGTIIVEETPFYATMGGQQGDKG 518

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H   +  G++++   + L++D   R +   NHSATHL
Sbjct: 519 VIYTADGTFKVEDTIKLLGGKVGHVGKMTSGMIKSGDKVTLSVDADLRGKTCKNHSATHL 578

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    +  RFD +H + +T+ E+  +E  VND IA +L V T 
Sbjct: 579 LQKALREVLGTHVEQAGSYQDAERTRFDFSHFQAMTAEEIAKVEKIVNDEIAADLEVRTD 638

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  E+A  +GA AL G KY ++VRVVS+     G  S   CGGTHV  TGEI    I+S
Sbjct: 639 VMTVEEAKKTGAMALFGEKYGEKVRVVSM-----GEFSKEFCGGTHVKHTGEIAAFKIIS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG    ++    + +L+  A   K +   +V ++E +  E + L  
Sbjct: 694 ESGVAAGVRRIEALTGDNVFAYYKNIEAELERAAKAAKTTPAALVEKIEHMMAEIKALNA 753

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +   E L        ++  V  ++  ++ VD   L+ + D L+ K+  G+++L
Sbjct: 754 ENESLKSKAAKEALGDVMDQVVEVKGVKLLATSVAGVDMNGLRDLGDQLKGKLGEGVVVL 813

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              +  K   V +   E +    +A +L + ++ KV   GGGGGRP+MAQ+GG N     
Sbjct: 814 ASEADGKVNLVAMATEEAMKKGAHAGNLIKAIAGKVG--GGGGGRPNMAQAGGKNPAGIP 871

Query: 887 QAIA 890
            A+A
Sbjct: 872 DAVA 875


>gi|257898621|ref|ZP_05678274.1| alanyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|257836533|gb|EEV61607.1| alanyl-tRNA synthetase [Enterococcus faecium Com15]
          Length = 880

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 360/930 (38%), Positives = 526/930 (56%), Gaps = 83/930 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+   N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   ++  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEIAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVAAIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV----------NFMSHIISEVDSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV            ++  +   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETISGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGRP MAQ+GG N      A+     +L +
Sbjct: 850 GGRPDMAQAGGKNPAGIPDALKAAKEWLAQ 879


>gi|257875750|ref|ZP_05655403.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809916|gb|EEV38736.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 880

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 357/912 (39%), Positives = 526/912 (57%), Gaps = 81/912 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+G       E  P   PG   E ERY+EIWNLVF +F  Q       LP  +IDTGMG
Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LERM +++Q    N++ DLF  +I A   ++G    G++    ++ +VI DH+R+ SF I
Sbjct: 232 LERMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V++ +  D  + L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               GL  +D   F Q ++ QR+RARA      S+G+ S     I          ++F+G
Sbjct: 412 AEDEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSALLTDIKVD-------SRFVG 463

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L  +  +                         ++ Q E + ++VS  + +++F +TP
Sbjct: 464 YDSLEANSEL------------------------LVIIQDEALHDSVSTGEAKLIFAETP 499

Query: 520 FYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ DTG  +  DG I  ++TDV+K   G F+H A + +  L+  ++  L +D 
Sbjct: 500 FYAEMGGQVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATI-KAPLKEGVNYFLQVDQ 558

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E 
Sbjct: 559 HRRNKIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQ 618

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I + LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGT
Sbjct: 619 IVNQKIWEALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGT 673

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV++T +I +  IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K +Q   V
Sbjct: 674 HVANTEDIGIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEV 733

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK-IADVNFMSHIISEV---DSKELKS 811
           V + E++  + R+LQ  +     +L N +     K + +VN +  I ++V   D  +L+ 
Sbjct: 734 VAKTEQLQAQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQ 793

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGG 869
           + D  ++K  S I++L   + + K ++L  + +   ++   A DL + ++ KV   GGGG
Sbjct: 794 LADQWKQKDHSDILVL-ATANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVG--GGGG 850

Query: 870 GRPHMAQSGGPN 881
           GRP MAQ+GG N
Sbjct: 851 GRPDMAQAGGKN 862


>gi|257866118|ref|ZP_05645771.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872448|ref|ZP_05652101.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257800052|gb|EEV29104.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806612|gb|EEV35434.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 880

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 357/912 (39%), Positives = 526/912 (57%), Gaps = 81/912 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+G       E  P   PG   E ERY+EIWNLVF +F  Q       LP  +IDTGMG
Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LERM +++Q    N++ DLF  +I A   ++G    G++    ++ +VI DH+R+ SF I
Sbjct: 232 LERMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V++ +  D  + L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               GL  +D   F Q ++ QR+RARA      S+G+ S     I          ++F+G
Sbjct: 412 AEDEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSALLTDIKVD-------SRFVG 463

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L  +  +                         ++ Q E + ++VS  + +++F +TP
Sbjct: 464 YDSLEANSEL------------------------LVIIQDEALHDSVSTGEAKMIFAETP 499

Query: 520 FYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ DTG  +  DG I  ++TDV+K   G F+H A + +  L+  ++  L +D 
Sbjct: 500 FYAEMGGQVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATI-KAPLKEGVNYFLQVDQ 558

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E 
Sbjct: 559 HRRNKIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQ 618

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I + LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGT
Sbjct: 619 IVNQKIWEALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGT 673

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV++T +I +  IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K +Q   V
Sbjct: 674 HVANTEDIGIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEV 733

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK-IADVNFMSHIISEV---DSKELKS 811
           V + E++  + R+LQ  +     +L N +     K + +VN +  I ++V   D  +L+ 
Sbjct: 734 VAKTEQLQAQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQ 793

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGG 869
           + D  ++K  S I++L   + + K ++L  + +   ++   A DL + ++ KV   GGGG
Sbjct: 794 LADQWKQKDHSDILVL-ATANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVG--GGGG 850

Query: 870 GRPHMAQSGGPN 881
           GRP MAQ+GG N
Sbjct: 851 GRPDMAQAGGKN 862


>gi|311747311|ref|ZP_07721096.1| alanine--tRNA ligase [Algoriphagus sp. PR1]
 gi|311302637|gb|EAZ83190.2| alanine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 874

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 343/900 (38%), Positives = 512/900 (56%), Gaps = 72/900 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+TF+EFFQ   H+ +PSS ++  NDPTLMFTN+GM  FK+ F G E P +  V   QK
Sbjct: 6   IRSTFIEFFQSKQHQYVPSSPIVVKNDPTLMFTNAGMNQFKDAFLGNETPKFARVANSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT  F L + RLY
Sbjct: 66  CLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTVVFKLPKERLY 125

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V++ D+        EA+  WKKI  +  D+II  +  DNFW M +TGPCGPCSEI  D
Sbjct: 126 VSVFEGDQGDGLSLDTEAYNFWKKI--VPEDRIIMGSKKDNFWEMGDTGPCGPCSEIHID 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     +PG    + + E+ IEIWNLVFMQ+ + +      LP   +DTGMG ER+ 
Sbjct: 184 LRPEAELAEIPGKDLVNNDHEQVIEIWNLVFMQYNRLSDGSLKELPAKHVDTGMGFERLV 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291
             +Q+K++NYD DLF   + A  + +G  Y GN+    +  RVIVDH+R+ SF IADG L
Sbjct: 244 RAIQQKSSNYDTDLFAPFLNAIAKKSGKVY-GNDEQTDIAFRVIVDHIRAISFTIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N   GYV+RRI+RRA+ Y     G+ EP +  L   +    G  +PE+ Q +  I + 
Sbjct: 303 PSNNKAGYVIRRILRRAVRYGYTFFGFQEPFLYELTSLIAEHFGDVFPEVRQQQEFISKV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+  F +TL+ GL +LD + + L +  D ++ G  AF+LYDT G PLD+   I    
Sbjct: 363 IYEEEASFLRTLENGLKILDQIKAELQEKNDTVIPGKTAFELYDTFGFPLDLTSLIAREN 422

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL+ +D   F   +E+Q++R+RA      S +    W  + E  G  +FIGYD L     
Sbjct: 423 GLS-LDEKGFLAEMEKQKTRSRA-----ASESETGDWVLVHEDEG-VEFIGYDFLE---- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               S+I+K       +V+E   G+K +VV D+TPFYAE+GGQ+
Sbjct: 472 ------------------SFSNIIKY-----RVVKEK-KGEKYQVVLDKTPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G  I D  ++++ D  KK   + +H  +V++     E+     +D + R     NH+
Sbjct: 508 GDKGWLISDNEKIRVIDT-KKENDLIIH--LVDKLPSNPEVKFSAEVDRKGRALSMNNHT 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H+ Q GS ++PD LRFD +H   +T  E+  +E+ VN  I +N+P
Sbjct: 565 ATHLLQSALKEVLGDHIQQRGSLVSPDLLRFDFSHFGKLTEEEITKVEEIVNTKIRENIP 624

Query: 649 VV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +V  R +  E+A + GA AL G KY D VRV++ + +     S  LCGGTHV  T +I L
Sbjct: 625 LVEKRNVPIEEAKSMGATALFGEKYGDFVRVITFDPD----FSVELCGGTHVPYTSQIGL 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIW 764
             I SE S  +G+RRIEAIT + A  +L GQ+  +K +   LK  +    ++   ++E  
Sbjct: 681 FKITSEGSSASGVRRIEAITAKAAEDYLRGQENLVKEIQELLKHPKDLKKSIEALIQEKN 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +  ++++L++ ++   +  E L      + +N +   +   ++  LK +   L+ ++++ 
Sbjct: 741 DLKKEIELLYQEKAGAVKGELLKEFVAGEGINTLIAKVDLPNADSLKKLGYELKNEVENP 800

Query: 824 IIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I+L   + + K  + +++ E+L+     NA  + R  AK +  GGGGG+P  A +GG N
Sbjct: 801 FIILAA-NIDGKPQIAVIIDEELVKSKNLNAGQIVRDLAKEI-QGGGGGQPFFATAGGKN 858


>gi|326791257|ref|YP_004309078.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542021|gb|ADZ83880.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 881

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 330/912 (36%), Positives = 495/912 (54%), Gaps = 73/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ +R  +L+FF+   H    S  L+P ND +L+  N+GM P K  FTGQE+P  + +T
Sbjct: 5   SLNELREMYLKFFESKMHLRAKSFPLVPHNDNSLLLINAGMAPLKPYFTGQEEPPRRRMT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +TK  ++  
Sbjct: 65  TCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIEWAWEFVTKHLEIPV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ TVY +DEEA ++W+   GL  +K+I +   DNFW     GPCGPCSEI+FD+G  
Sbjct: 121 ERLFATVYQDDEEAAEIWRNKIGLPNEKVIYMGKEDNFWEAGIDGPCGPCSEIYFDRGPE 180

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                P  G   + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q  
Sbjct: 181 FGCDSPDCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAAMMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           ++ +D+D  K +     Q+ G+ Y  N  N V+ RVI DH+RS +F+ ADG+LP+NEGRG
Sbjct: 241 SSIFDVDTIKAIRDHVCQLAGVTYGENYKNDVSIRVITDHIRSVTFMAADGVLPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RR++RRA+ +A+LLG     +  L+  +       Y EL      I + L  E++ F
Sbjct: 301 YVMRRLLRRAVRHAKLLGIEGLFLKDLVKTVVDNSKHEYTELEDKYEYITKLLTVEEKNF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+DRGL +L   +  +  +   +L+G   F L DT+G P+D+  +IL  +GL   D  
Sbjct: 361 NETIDRGLNILKAHIDEMKAEGKTVLDGKACFTLSDTYGFPIDLTHEILEEQGLKA-DEE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   ++ QR +AR    G      ++  F+  +    T F+GYD L             
Sbjct: 420 GFKVEMDAQRQKARDARGGSKYMGADETIFNQMDSTMKTTFVGYDKLE------------ 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +  ++ +    E++E A  G  + VV  +TPFYAE+GGQ GDTG    
Sbjct: 468 -----------TTGTLEVLANDEELLEAAGCGDSIYVVISETPFYAESGGQAGDTGLITT 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +  ++D  K   G F HHA V  G +    S   T++  +R   S NHSATHLL  A
Sbjct: 517 ATGKAVVSDTTKVIGGKFAHHAQVVEGSIEKGQSATFTVENVSRMDTSRNHSATHLLQKA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++G H+ Q GS +  D LRFD TH + +T  +L+ +E  VN+ I + L +  + M  
Sbjct: 577 LREVVGGHIEQAGSNVNKDRLRFDFTHFEALTHEQLEKVEALVNEKILEGLTITIKEMPI 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY   VRVV++     G +S  LCGGTH+ +T  I    I+SE+ +
Sbjct: 637 DEARKLGAMALFGEKYGQTVRVVNM-----GDYSVELCGGTHLQNTAAIGTFKIISETGV 691

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ A       +  L  +++ +K  +  VV +VE +  E + L+  + K
Sbjct: 692 AAGVRRIEAVTGRGALHFYQTMENSLNEVSALVKAKKTEVVKKVESMTIELKNLEKENEK 751

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K ++              I  +  +   I E+D  +LK++ D+L+ ++Q G+++L+   
Sbjct: 752 LKAEIAASKAGALTEQAKTINGIKVLVSQIDELDMNDLKNMGDSLKDQLQDGVVLLMS-- 809

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--------------GGRPHMAQS 877
                         + D+ N V +A  SA   G   G              GGRP+MAQ+
Sbjct: 810 -------------HVADKVNLVAMATPSAVEKGVHCGQIISAVAGVVGGKGGGRPNMAQA 856

Query: 878 GGPNGNKADQAI 889
           GG + +K  +AI
Sbjct: 857 GGKDASKIKEAI 868


>gi|189345755|ref|YP_001942284.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|189339902|gb|ACD89305.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 888

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 345/918 (37%), Positives = 517/918 (56%), Gaps = 84/918 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL+FF    H+++ S+ +IP +DPTL+FTN+GM  FK++F G+    Y      QK
Sbjct: 6   IRQSFLDFFAGKEHKIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRAADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L + RLY
Sbjct: 66  CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWKLPKERLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TV+ +D+E+F+LW+ ++ +  D I+R    DNFW M E+GPCGPCSEI  D  E   G 
Sbjct: 126 ATVFRDDDESFQLWQTVTDIPHDHILRFGEKDNFWEMGESGPCGPCSEIHIDLTE--DGS 183

Query: 187 LPGSSEEGE-RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                  G+ R IE+WNLVF+Q+ +Q       LP+  +DTGMG ER+  V+Q K +NYD
Sbjct: 184 GKSLVNVGDYRVIELWNLVFIQYNRQGDGRLEPLPQRHVDTGMGFERVCAVMQGKGSNYD 243

Query: 246 IDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
            D+F+ L     ++TG+ Y+        +  RVI DH R+ +F ++DG +P+NEGRGYVL
Sbjct: 244 TDVFRPLFDRITEITGVVYKATMDDPCDIAMRVIADHARTLTFALSDGAMPSNEGRGYVL 303

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ Y++ LG +EP++  L+  L   MG  +PEL++ +  +   +R+E+E F  T
Sbjct: 304 RRILRRALRYSKTLGCSEPILHQLVGTLAVSMGEEFPELVKQQETVSRIVRAEEESFLAT 363

Query: 362 LDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LDRG+ + + V+  +       + GD AF+LYDT G PLD+ + ++ A     +D   F 
Sbjct: 364 LDRGIEIFNEVIAGARAAGAAAITGDDAFRLYDTFGFPLDLTR-LMAAEAGFEVDEPGFE 422

Query: 420 QALEEQRSRA---RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
             ++EQ++RA   R     L     E +WFS +     + F GYD L             
Sbjct: 423 HCMQEQKTRARQDRKDKRQLQEDGGEWMWFSEER---TSVFTGYDSLE------------ 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                +    GVS +                  +V +V D+TPFYAE+GGQ GD G    
Sbjct: 468 ----ELSSIAGVSMLP----------------DRVLLVLDRTPFYAESGGQSGDCGWIET 507

Query: 537 DGIRLQITDVQKKAEGIF-----VHHAIVERGILRTEMSL-------VLTIDYQNRRQLS 584
              RL+++D +K  + I       H    +  I   ++S          ++D  NR+   
Sbjct: 508 AEYRLKVSDTRKDGDAIVHVVTEAHDTARDSAIDPADVSFDGGKLACRASVDRANRQGTE 567

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG HV Q GS ++ + LRFD +H   +TS EL+S+E  VN+ I 
Sbjct: 568 RNHTATHLLHAALRRILGQHVQQKGSFVSAERLRFDFSHFSKLTSGELESVESEVNEQIR 627

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
               V+  + +  ++A+  GA A  G KY DRVRVV +     G+ S  LCGGTHV S G
Sbjct: 628 SAETVIKHQDVPYDEALGKGALAFFGDKYADRVRVVEIP----GL-SIELCGGTHVDSIG 682

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           +I L  IVSESS+ +G+RRIEA+TG+ A   +  +  +L+ +   LK+ ++  V  ++ E
Sbjct: 683 QIGLFKIVSESSVASGVRRIEALTGKAAEQLMWKEYRELQEIRHMLKLKAEEPVTAKIVE 742

Query: 763 IWEEYRKLQ-LIHAKRKLQLNVEDLSCH------KIADVNFMSHIISEVDSKELKSVMDA 815
           + E  ++L+ L+   R   L   D+  H      ++  +  M+ ++  VD++ L+    A
Sbjct: 743 LAESKKELEKLLQEYRSSALA--DILLHALDASEEVNGIRIMARMLDHVDAEALRQATLA 800

Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGGGR 871
           L++K+   +GI+  V    E K S++    +  +  F  +A  L R +AK +  GGGGG+
Sbjct: 801 LREKVAGSAGILCTV---DEGKVSLIAFAGDRAVRDFGIDAGKLVREAAKNV-QGGGGGK 856

Query: 872 PHMAQSGGPNGNKADQAI 889
           P  A +GG N    ++A 
Sbjct: 857 PEFATAGGKNPEGIEKAF 874


>gi|329961902|ref|ZP_08299915.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328531125|gb|EGF57975.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 873

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 349/919 (37%), Positives = 509/919 (55%), Gaps = 91/919 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRESFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y GNN    +  RV+ DH+R+ +F 
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTTY-GNNQQQDIAMRVVADHIRTIAFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K
Sbjct: 298 ITDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELIAQK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401
            LI + ++ E++ F +TL+ G+ LL+  ++     GK EI +G  AF LYDT G PLD+ 
Sbjct: 358 DLIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLT 416

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           + IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +LKE  G T+F+GYD
Sbjct: 417 ELILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLKE--GTTEFVGYD 468

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                  +   R+V  +   +                             ++V D+TPFY
Sbjct: 469 YTEYETGILRYRQVKQKNQTL----------------------------YQIVLDKTPFY 500

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R 
Sbjct: 501 AESGGQVGDTGVLVNEFETVEVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKRA 557

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             + NHS THLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN 
Sbjct: 558 ACAANHSCTHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNA 617

Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV+
Sbjct: 618 KIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHVA 671

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-----------ASFL 749
           +TG I ++ IVSESS+ AGIRRIEA TG R    L    + ++ L           A+  
Sbjct: 672 ATGNIGMVKIVSESSVAAGIRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSAAIR 731

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K    N  G  +++ E++ K +    K KL  +V++++  K+  + F S +   V +  +
Sbjct: 732 KYIDEN-AGLKKQV-EDFMKEKEAQLKEKLLQSVQEINGVKV--IKFCSAM---VPADAV 784

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGG 868
           K++   L+ +I   +  + G   E K  + ++++++L+     A  L + +AK++  GGG
Sbjct: 785 KNIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGALVKEAAKLI-QGGG 843

Query: 869 GGRPHMAQSGG--PNGNKA 885
           GG+PH A +GG  P+G KA
Sbjct: 844 GGQPHFATAGGKNPDGIKA 862


>gi|320335628|ref|YP_004172339.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756917|gb|ADV68674.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 894

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 354/932 (37%), Positives = 509/932 (54%), Gaps = 102/932 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
           + + IR  +L+FF+  GH  LPS SLI   DPT +FT +GM PFK  F G          
Sbjct: 8   STAEIREKYLQFFESKGHLRLPSHSLI-APDPTTLFTVAGMQPFKPQFMGSAPKFSGVPG 66

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT- 115
            ++ VTT QKC+R G    D++NVGRT RH + FEMLGNFSFG YFK  AI  AW+ LT 
Sbjct: 67  EHRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMLGNFSFGDYFKRDAIHWAWEFLTG 122

Query: 116 -KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPC 169
            +   LD  +LY+T+Y++D+EAF  W +  GL    + R   ++NFW          GPC
Sbjct: 123 PEWMGLDASKLYVTIYEDDDEAFGYWTQEIGLDPSHVHRFGADENFWPADAPLKGPNGPC 182

Query: 170 GPCSEIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPK 221
           GPCSEI+FD+G            ++ E  R++EIWNLVF QF++Q+           LP 
Sbjct: 183 GPCSEIYFDRGPAYGDDSWADYATTRESARFLEIWNLVFPQFDRQDPAADGSPVLADLPF 242

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
            +IDTGMGLER+A+V+Q+  + Y  D+FK L++   +++G  YEG   V+HRVI +H+RS
Sbjct: 243 KNIDTGMGLERIASVVQDVPDFYSNDVFKPLVERVAELSGKPYEGEVSVSHRVIAEHVRS 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +  +ADG++ +N GRGYV+R+I+RRA  +A LLG  EP +  L+P +   MG AYPE+ 
Sbjct: 303 VTMTVADGVVLSNTGRGYVIRKILRRASRHAYLLGLREPTLHKLVPLVVEAMGGAYPEVR 362

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
                +E  +RSE+ERF +TL+ G+  LD +L  + +   L+G+ AF LY T+G PLD+ 
Sbjct: 363 SEAARVEAAIRSEEERFLRTLESGMGRLDALLGKMERGATLSGEEAFTLYGTYGFPLDLT 422

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG---ATQFI 458
           ++I    G++ +D   F++ALE  +  ARA   G   G +E ++  + E  G   AT F+
Sbjct: 423 REIAEEYGVS-VDEAGFDKALEADQELARA---GSKYGKSE-LFGVVAEVLGDLPATTFV 477

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GYD L       E R                  V AIV  GE +    +G + +VV D+T
Sbjct: 478 GYDELE-----AEGR------------------VLAIVSGGEPLSRLTAGSEAQVVLDRT 514

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAE GG++GDTG    DG    + D +K   G+F+H   V  G L +E + V  +   
Sbjct: 515 PMYAEGGGEVGDTGVLTWDGGEAAVLDTRKTPGGVFLHTVEVLHGEL-SEGAEVRALVNP 573

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +R+    +H+ATHLLH AL  +LGS V Q GS + PD LRFD TH   +++ E+  +E  
Sbjct: 574 DRQATERHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHGSALSADEVAQVEAL 633

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALC 694
           VN  +  + PV  R M  ++A ASGA AL G KY D VRVVSVE    + D  V S  LC
Sbjct: 634 VNRWVTADFPVTWRTMPIDEARASGAMALFGEKYGDEVRVVSVEGGVPFGDTEVASRELC 693

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ------RARSHLMGQ---------- 738
           GG HV+ TGEI    I+S+ ++ AG+RR+EA+ G+      R R    G+          
Sbjct: 694 GGAHVTRTGEIGAFVILSDENVAAGVRRVEALAGEAAVRWVRERLGAAGRAASSVNATVD 753

Query: 739 --DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD 793
              E++  + + LK +QG + G          K QL  A+         V +L   K+A 
Sbjct: 754 QLPERIAQVQAQLKAAQGEIAG---------LKRQLAQAQMGGGSAGSQVRELGGFKVAA 804

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V      +S V+  EL+   D+  ++  + + ++ G        +++  T+D + R    
Sbjct: 805 VR-----LSGVEGNELRGAADSFLEQTGADVAVVAG-----DKGLVVKATKDAVGRGAHA 854

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
                     GGG GGGRP MAQ+G  + + A
Sbjct: 855 GQLIGKLAAAGGGKGGGRPDMAQAGVQDADAA 886


>gi|297584730|ref|YP_003700510.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297143187|gb|ADH99944.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 877

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 345/918 (37%), Positives = 531/918 (57%), Gaps = 74/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7   AEVRQMYLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPDNPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----FDL 120
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT +    FD 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAILWAWEFLTDKRWIGFDA 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +T+Y ED+EAF++W +  GL  ++IIR+   +NFW + E GPCGP +EIF+D+G
Sbjct: 123 D--KLAVTIYPEDDEAFEIWHQKVGLPKERIIRL--EENFWDIGE-GPCGPNTEIFYDRG 177

Query: 181 ECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           E        P   PG   E ER++EIWNLVF QF          LPK +IDTGMGLERM 
Sbjct: 178 EAYGNDPNDPEMFPGG--ENERHLEIWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292
           +V+Q+   N+D DLF  LI+ +E+++G  Y  ++  +   +VI DH+R+ +F I+DG LP
Sbjct: 236 SVIQDARTNFDTDLFVPLIEETERLSGKTYGEDDQADTAFKVIADHIRTVTFAISDGALP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ YA+ LG  +  M  L+P + + M   YPE+ +    I + ++
Sbjct: 296 SNEGRGYVLRRLLRRAVRYAKQLGLDDAFMYKLVPVVGSIMTEFYPEVGEKADFIAKVVK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +E++RF +TL  G+ ++  ++      G+ +I +G+  FKLYDT+G P+D+ ++ +   G
Sbjct: 356 TEEDRFHETLQDGMNMIVNLIKEAKENGQTDI-SGEAVFKLYDTYGFPVDLTEEYVEEAG 414

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L  +D   F++ ++ QR RAR+     GS    +++  S++E   A+ F GY  L+    
Sbjct: 415 LT-VDKAGFDKEMKAQRDRARSARQDSGSMQLQDEVLGSIEE---ASSFTGYTHLQDE-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  V AIV+ G  V+ A  G +++ +  +TPFYAE+GGQL
Sbjct: 469 ---------------------GTVSAIVKDGSRVDFATEGDEIQFMLTRTPFYAESGGQL 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +G+ +++ DV+K   G  +H   +  G L+   ++   +  + R+ +  NH+
Sbjct: 508 ADQGTVHAEGVTVEVDDVKKAPNGQHLHIGKISEGTLKAGAAVTAEVKERMRKAIIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  D LRFD +H   +T  E+  +E  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGEHVNQAGSSVGDDRLRFDFSHFGQMTEEEVNRVEAIVNEKIWASIP 627

Query: 649 VVTRIMNR--EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           V   IMN   + A   GA AL G KY   VRVV V     G +S  LCGG HV +T EI 
Sbjct: 628 V--EIMNTSIDHAKEMGAMALFGEKYGKEVRVVQV-----GEYSLELCGGCHVQNTAEIG 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  +VSE+ I AG+RR+EA+TG+ A   +  Q   L   A+ LK    +V  RV+++ ++
Sbjct: 681 LFKLVSEAGIGAGVRRVEAVTGKGAYEFMNHQLAYLDEAAAKLKTKVADVPYRVDQLQKQ 740

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSKE---LKSVMDALQKK 819
            R+         L   + +L    + D    +  +  +  +V++K+   L+   D L++K
Sbjct: 741 LREKD--KEVESLSAKLSNLEAGSVLDDVETIEGIPVLYKQVEAKDMNTLRKTADTLKEK 798

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I SGII++  ++ +K + V  V  + + + ++A +L +  A +  GGGGGGRP MAQ+GG
Sbjct: 799 IPSGIIVIGAVTGDKVSIVASVSKDYVTEGYHAGNLVKEIAGMC-GGGGGGRPDMAQAGG 857

Query: 880 PNGNKADQAIAGVASFLK 897
            N +   +A+  V   +K
Sbjct: 858 KNPDALPEALKKVPELIK 875


>gi|255994094|ref|ZP_05427229.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993762|gb|EEU03851.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 878

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 337/921 (36%), Positives = 505/921 (54%), Gaps = 82/921 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FL FF+  GH    S  L+P +D +L+  NSGM P K  F+G++ P  + +TT
Sbjct: 13  VNEIREKFLSFFEGKGHLRAHSFPLVPQDDDSLLLINSGMAPLKPFFSGEKTPPAERMTT 72

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG T RH TFFEMLGNFSFG YFK+ +I+  ++ +T    +   
Sbjct: 73  SQKCIRTG----DIDNVGHTARHGTFFEMLGNFSFGDYFKKESIEWGYEFITDVLKIPSE 128

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG--- 180
           +L+ITVY +D+EA+K+W +  G+  +++ R+  +DNFW +   GPCGPCSEIF+D+G   
Sbjct: 129 KLHITVYKDDDEAYKIWNEDVGIPGERLYRLGKDDNFWEIG-NGPCGPCSEIFYDRGEEY 187

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                EC PG       + +RY+E WN VF QF +    +   L   +IDTGMGLERMA 
Sbjct: 188 GCGSKECSPGC------DCDRYLEFWNHVFTQFNKTQDGKYEPLSHPNIDTGMGLERMAC 241

Query: 236 VLQEKTNNYDID---LFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGIL 291
           ++Q   + +DID     K  I+       ++    +      VI DHLRS++F+++DGIL
Sbjct: 242 IMQGVESIFDIDTISFIKGFIEGKAMDAKVRLSSEDFNTGLNVITDHLRSATFMLSDGIL 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RR++ +A  LG     ++     +      AYPEL+  K  I   +
Sbjct: 302 PSNEGRGYVLRRLLRRSIIHANKLGLDSDALVETAGKVIETSEGAYPELVAQKEHIFTEI 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E  +F KTLD G  +L+G +  L ++  +IL+G+ AFKLYDT G P+++  +IL    
Sbjct: 362 KDECAQFKKTLDSGESILNGYIDALKEEGSDILDGERAFKLYDTFGFPIELTAEILEGFS 421

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F + +E Q+  AR      GSG        L E     +F GY+        
Sbjct: 422 MK-VDFEGFKKHMEYQKELARKGRKNEGSGFD---MVELGESIEPCEFTGYE-------- 469

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              + + K +        EA S     V+ D+TPFY   GGQ  
Sbjct: 470 -----------------SAAEVAKVV-----FCTEADSEGVFYVILDRTPFYPRGGGQEP 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--------ILRTEMSLVLTIDYQNRR 581
           DTG  +  G    + DV KK + I   HA+   G         +     +  T+D +NR 
Sbjct: 508 DTGKLVISGNEFCVLDVSKKKDVIV--HAVKFAGKEGKGSKISINKGDEVSATVDLKNRN 565

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               NH+ATHL+H AL  ++   ++Q GS ++ DGLRFD+ + KP++  EL+ IE  VND
Sbjct: 566 AAMANHTATHLMHAALRELISKDITQAGSKVSCDGLRFDINYKKPLSYEELRDIEVWVND 625

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            IA  LPV  RIM +++AI SGA  L   KY D VRVVS+E       SS LCGG HV +
Sbjct: 626 RIASWLPVTKRIMKKDEAIKSGAIGLFSDKYKDDVRVVSIE-----DASSELCGGLHVDN 680

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I    IV ES++ +G RRIEAITG+ A ++L+  D + K L S  K   GN+  +V+
Sbjct: 681 TGYIGSFKIVKESAVSSGTRRIEAITGRAASNYLLQLDAEKKKLESLTKTQDGNIYDKVQ 740

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           +++ E + L+   +K K     +D+S       +  V F S I+ +++  ++K +  +L 
Sbjct: 741 KLYSEIKDLKADLSKLKKGRASDDISGSIEIKDVEGVKFGSAILGDMEIPDMKDLATSLT 800

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ ++ +++L   S+ +K ++++   ED +D+ ++A DL +  A +  G  GGG+P MAQ
Sbjct: 801 QRDKNLVLLLA--SQGEKFTMVMACGEDAVDKGYSAGDLIKQVAPIC-GAKGGGKPKMAQ 857

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG +    D     V S LK
Sbjct: 858 AGGGDEKLFDDVCKAVLSALK 878


>gi|29833392|ref|NP_828026.1| alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|41018194|sp|Q827S4|SYA_STRAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29610515|dbj|BAC74561.1| putative alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 890

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 350/923 (37%), Positives = 519/923 (56%), Gaps = 80/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L F+++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFYEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPWPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTPQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA  +W+   G+ A++I R+   DN+WSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYLDDDEAETIWRDKIGVPAERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+    +K +  IL   P+ +IDTG+G+ER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKDDFEILGDLPQKNIDTGLGMERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +IQ + ++TG++Y     + V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYEIDTSMAVIQKATELTGVEYGAAHGSDVSLRVVTDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDVVIAMMGQQYPELISDRQRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  ++       ++L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETKASGGQVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T FIGY        
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQSKKTGHADLGAYREIADAAGETDFIGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S+IV  I+  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 469 --------------TQTEGESTIV-GILVDGVSSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   +  G  +++ D QK   G++VH  +V+ G +       ++ID + R+ ++  H
Sbjct: 514 GDTGRIKVESGAIIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQVSIDVRRRKAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +  +  +E  +N+++A++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTTVMTDVEQQINEVLARDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  +   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQIQELVK-------GRPEELPEKV 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ     +   K  DV  ++ +  +V     + +L+ +
Sbjct: 742 SAMLGKLKDAEKEIERFRAEKVLQAAAGLVDSAK--DVRGIALVTGQVPDGTTADDLRRL 799

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +  ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGG
Sbjct: 800 VLDVRGRIQGGRPAVVALFTTVGGKPLTVIATNEAARERGLKAGDLVRAAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+P +AQ GG N     +AI  V
Sbjct: 859 GKPDVAQGGGQNPAAIGEAIDAV 881


>gi|169350062|ref|ZP_02867000.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552]
 gi|169293275|gb|EDS75408.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552]
          Length = 869

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 339/898 (37%), Positives = 510/898 (56%), Gaps = 61/898 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH++ PS SLIP +DPTL++ N+G+   K  F G  KP    +T  
Sbjct: 7   NQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAALKKYFDGTIKPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+LLT E  F  D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDFAWELLTDEKWFAFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYITV+D DEEA+  W  + G+    +++  T  NFW + E GPCGP SEIF+D+GE 
Sbjct: 123 DKLYITVHDHDEEAYNYWVDVIGVEPSHMLK--TPGNFWEIGE-GPCGPDSEIFYDRGEK 179

Query: 183 I-PGGLP----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234
             P GL         E +RYIEIWNLVF Q+  Q   ++ +   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPEGLGLKLFYEELENDRYIEIWNLVFSQYNSQEGVDRNDYEELPQKNIDTGMGLERIT 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +++Q+   N+D D F  +I  +E++  + Y+ N +  +RVI DH+R+ +F +ADG L  N
Sbjct: 240 SIIQDGETNFDTDFFLPIIHEAEKLANVSYQENKMA-YRVIADHIRTVTFALADGALFDN 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRRI+RRA+ Y + +G  +  M +L+  +   M   Y  L +    I + ++ E
Sbjct: 299 AGRGYVLRRILRRAVRYGKQIGIEKAFMYNLVGVVSEIMKEFYDYLPEKVSYISDLVKKE 358

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F KTL  G  LL G++     D I++G  AFKLYDT+G P ++  +I     L  +D
Sbjct: 359 EEAFHKTLSNGEKLLSGLIKK-NSDGIISGKDAFKLYDTYGFPFELTLEIAQESNLK-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + L+ Q+ R+R   +   S T++K              + +DL    ++      
Sbjct: 417 EEGFKEELKLQQMRSRGARVDNESMTSQK-----------PDLMAFDLPSSFEY------ 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                 P ++   V  + K  V+  ++ +        E+VFD T FYAE GGQ  DTG  
Sbjct: 460 -----DPTNIRGVVIGLFKDGVKTDQLNDYG------EIVFDVTTFYAEMGGQCADTGIV 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + ++ +V K      +H   +E G ++    L L ID + R +++ NH+ATH+L 
Sbjct: 509 YNDECKAKVVNVLKAPNQQHLHFVELESGSIKVGDVLTLEIDKEKRGKITANHTATHILQ 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++GSH++Q GS +  + LRFD TH + IT+ +LK++E  VND+I + + V    M
Sbjct: 569 AALKEVIGSHINQAGSYVDDNRLRFDFTHFEKITNEQLKAVEQKVNDVIFKGIDVEIANM 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           ++E+A+ASGA AL   KY D VRVVSV     G +S  LCGG HV+++  I L  I +E 
Sbjct: 629 SKEEALASGAMALFDEKYGDTVRVVSV-----GNYSKELCGGCHVTNSSNIGLFKIETEE 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLI 773
           S+ +GIRRIEA+TG+ A   L+ + E + +++S LK+ ++  VV +V  + EE   ++  
Sbjct: 684 SVGSGIRRIEAVTGKIAYEALVLEKETVDTISSILKLKNRKEVVNKVTSLTEELNAVKKE 743

Query: 774 HAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVG 829
                 +LN  + +   + I D+N +  +  E D  S + K +   L+ KI SGI++LV 
Sbjct: 744 VEALNSKLNALNAANRMNDIQDINGVKVLFVEEDMESNKAKQLAFDLRDKIDSGIVILVS 803

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              E+K S  + V++D +     A D+ +     +  G GGG+P  AQ G P   K D
Sbjct: 804 -KFEEKCSYFVGVSKDYVASGIKAGDVVK-KINAIVDGRGGGKPDFAQGGCPVNEKID 859


>gi|37521917|ref|NP_925294.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|44888325|sp|Q7NI36|SYA_GLOVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|35212916|dbj|BAC90289.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 871

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 344/907 (37%), Positives = 518/907 (57%), Gaps = 60/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N ++IR  FL+FF+   H  LPS+SL+P +DPT++ T +GM+PFK +F G+ +     VT
Sbjct: 6   NGNAIREKFLQFFESKQHRRLPSASLVP-DDPTVLLTIAGMLPFKPVFMGKRERPAPRVT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  F+L  
Sbjct: 65  TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKREAIGWAWELVTGVFELPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGE 181
            RL+++VY+EDEEA  LW++++GL   ++ ++  + NFW    TGPCGPCSEI++D   E
Sbjct: 121 ERLWVSVYEEDEEALVLWQEVAGLPPVRVRKMGADSNFWESGPTGPCGPCSEIYYDFHPE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G +    ++  R++EI+NLVFMQ  + ++     LP+ +IDTG+GLERMA VLQ   
Sbjct: 181 RGEGDI--DLDDDSRFLEIYNLVFMQLNRDSEGTFSELPRKNIDTGLGLERMAQVLQGVP 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   +I+ +E ++G  Y   +     + ++I DH R+   L+ADG+LP N GRG
Sbjct: 239 NNYETDLVFPIIRKAEVLSGRDYFKADDQQKTSFKIIGDHTRAVVHLVADGVLPGNLGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRR++RR + + R+LG     +  +       MG AYP L++++ LI   L +E+ +F
Sbjct: 299 YILRRLIRRMVRHGRMLGIAGSFLPQMATVAVELMGGAYPNLLESRELILTRLATEESQF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+ G  LLD +L     ++ ++G  AF LYDT+G PL++  ++   RGL  +D+ ++
Sbjct: 359 LQTLETGERLLDEILGR--SEKRISGVDAFMLYDTYGFPLELTMEVAAERGLE-VDVAAY 415

Query: 419 NQALEEQRSRAR--AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            +A+E+QR RAR  A ++ L  G +     +  E+   T F+GY            R V 
Sbjct: 416 EEAMEKQRERARRAAKTVDLTQGAS----LADLER---TDFLGY------------RNVA 456

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            +           ++VK ++ +GE +E A +G  V++V DQTPFY E GGQ+GD G   G
Sbjct: 457 SK-----------AMVKLVLFEGEPIERASAGASVQLVLDQTPFYPEGGGQIGDRGYLSG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             + ++I DVQK+ + + +H   +ERG + T  S+   ID  +RR+   +H+ATHLL  A
Sbjct: 506 PDLLVRIEDVQKR-DTVILHTGRIERGTVATGDSVQAQIDLADRRRSQAHHTATHLLQAA 564

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG  V Q GS +  D LRFD +  K ++ AE++ +ED VN  IA+   +   +M  
Sbjct: 565 LKKVLGESVQQQGSLVAFDRLRFDFSWPKALSQAEIQQVEDLVNTWIAEAHTLSQEVMPI 624

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A A GA A  G KY   VRV+ V     GV S  LCGGTHV +T EI L  +VSE+ I
Sbjct: 625 DQAKARGALAFFGEKYGSEVRVIDVP----GV-SIELCGGTHVRNTAEIGLFKMVSETGI 679

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ----- 771
            +G+RRIEA+ G     +L  +D   + LA   KV    +  RV  +  + ++ Q     
Sbjct: 680 ASGVRRIEAVAGPAVLEYLRLRDTVTRQLADEFKVQVEQIPQRVAALTSDLKQAQKQIDS 739

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830
           L  A    +                +   + + + + LKS  + L  K+ + G ++L   
Sbjct: 740 LKAALATARAEALLGQAETTGGFRVLVADLGDTEPEALKSAAEHLLAKLGEGGAVVLGSA 799

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K S++    +  + +  NA       AK+  GGGGGGRP++AQ+GG    K   A+
Sbjct: 800 PAADKVSLVAAFGKGAVAKGLNAGKFVGEVAKIT-GGGGGGRPNLAQAGGKQPEKLKNAL 858

Query: 890 AGVASFL 896
           +  +S L
Sbjct: 859 SEASSKL 865


>gi|282878226|ref|ZP_06287022.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299644|gb|EFA92017.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 872

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 333/919 (36%), Positives = 514/919 (55%), Gaps = 75/919 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR +F +FF+  GH ++ S+ ++  +DPTLMFTN+GM  +K+I  G ++P  +    
Sbjct: 3   ANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRRRAD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI  AW+ L     LD +
Sbjct: 63  SQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLDPK 122

Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            LY+TV++         D EA K W+K   L AD II    +DNFW M +TGPCGPCSEI
Sbjct: 123 DLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPCSEI 180

Query: 176 FFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
             D + +     LPG    +++  + IEIWN+VFMQF ++       L    IDTGMG E
Sbjct: 181 HVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADG 289
           R+  +LQ K +NYD  +F+  I   E+++G KY E  ++ V  RV+ DHLR+ +F IADG
Sbjct: 241 RLVRMLQGKNSNYDTGIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL+  + LI 
Sbjct: 301 QLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRELIG 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           + ++ E++ F +TL++G+ LL+  +  L   GK +I +G+ AF+L+DT+G PLD+ + ++
Sbjct: 361 KVMKEEEDSFLRTLEKGINLLNNAMDELKKAGKTQI-DGEQAFRLFDTYGFPLDLTE-LI 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           C      +D   FN  +++Q+ RAR       +      W  +++  G  QF+GYD    
Sbjct: 419 CREHGFSVDEQQFNAEMQKQKDRARN-----AAQVENSDWVEIRQ--GEQQFVGYDYTEY 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              + + RKV  +K                                EV+ D TPFY E G
Sbjct: 472 ECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGEMG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  + +   + + D  K+     +H  I+++     E   +  +D   R   + 
Sbjct: 504 GQVGDQGVLVSEHETVDVIDT-KRENNQSIH--IIKQLPQHPEADFMACVDTDKRDACAA 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VN++I Q
Sbjct: 561 NHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNNLIRQ 620

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++P+   R    E+A   GA AL G KY D+VRVV          S   CGG H  STG 
Sbjct: 621 DIPLDEHRDTPIEEAKEMGAIALFGEKYGDKVRVVRFG------PSCEFCGGIHAKSTGR 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SESS+ AG+RR EAITG++    +   ++ +K++ S    ++ ++ G +E+  
Sbjct: 675 IGLFKILSESSVAAGVRRFEAITGRKCEEAMYAIEDTVKAIRSLFNNAK-DLKGVIEKYM 733

Query: 765 EEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQKKI 820
           +E+  +  ++   + +     +D    +  ++N ++ I  +  +D    K ++  +++ I
Sbjct: 734 DEHDTMRKEIEQFQAQAVQRTKDELIRRAENINGVTVIKAVLPIDGNAAKDLVFKIREAI 793

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            S ++ ++G + ++K  + ++++ED++     NA  + R +AK++  GGGGG+PH A +G
Sbjct: 794 PSHLLCVIGTTAQQKPLLSVMLSEDMVKDHGLNAGQMVREAAKLI-QGGGGGQPHFASAG 852

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N +    A+  V    K
Sbjct: 853 GKNVDGIRAAVDKVIELAK 871


>gi|289550615|ref|YP_003471519.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289180147|gb|ADC87392.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 876

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 339/919 (36%), Positives = 507/919 (55%), Gaps = 75/919 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMAMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ LW    GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V Q
Sbjct: 180 FGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLERMASVAQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
               NY+ DLF  +I+  E+V+G KY       V  +VI DH+R+ +F I+DG LPANEG
Sbjct: 240 NVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGALPANEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  ++SE+E
Sbjct: 300 RGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  GL +LD +++   L   EI NG  AFKLYDT+G P+++ ++I    G+  +D
Sbjct: 360 RFHETLQEGLSILDQLIAKAKLTTKEI-NGSDAFKLYDTYGFPIELTEEIATQEGIT-VD 417

Query: 415 IISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           + +F   +++QR RAR     + S+ + S         LK     ++F+GY+        
Sbjct: 418 METFENEMQQQRDRARQARQNSQSMQIQSEV-------LKNITTKSKFVGYE-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  G+ V  A +G  +  V  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TTDYQTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H   V+ G +     +   ++   RR +  NHSA
Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTVQFGHVTVNSHVDANVNKDERRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T+ E++ +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNM-----APFSLELCGGIHVQNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYR 768
           I+SES   AG+RRIEA+TG+ A  +L G   K     ++LKV S   V+ +V ++ EE +
Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQHKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742

Query: 769 KLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
            +     +R  ++      N+ED    ++ ++N    + ++VD    K ++  MD  + K
Sbjct: 743 HVNKQLEQRNKEITTLKMGNIED----QVEEINGFKVLATQVDIANPKAIRETMDDFKSK 798

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +Q  II+L+    E K S++  V +    +  A D+ +  A ++ GG GGGRP MAQ GG
Sbjct: 799 LQDTIIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGG 856

Query: 880 PNGNKADQAIAGVASFLKK 898
                  +++  +  ++KK
Sbjct: 857 TQPENITESLRFIKDYIKK 875


>gi|297198338|ref|ZP_06915735.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714390|gb|EDY58424.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 890

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 350/924 (37%), Positives = 521/924 (56%), Gaps = 82/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSPQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  RL+ITVY +D+EA ++W ++ G+  ++I R+   DN+WSM   GPCGPCSEI +D+
Sbjct: 119 LEADRLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E      + N +    LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKDNFEILGELPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I+ + ++TG+ Y    ++ V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P+++ L+  +   MG  YPEL+  +  IE+  
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVLDLVDTVIAMMGQQYPELVTDRERIEKVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  ++       ++L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 VAEENAFLKTLKAGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A + G  +G      + ++ ++ G T+F+GY        
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQGKKTGHAGAGAYRAIADQAGETEFLGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T   S+IV  I+  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 469 --------------SDTESESTIV-GILVDGASSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   +  G  ++I D QK   G++VH  +V+ G +         ID + R  ++  H
Sbjct: 514 GDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQFGEVTVGAKAHAAIDNRRRTAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIK-------GRPEELPEKV 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ         K  DV  ++ +  +V       +L+ +
Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGIAVVTGQVPDGTTPDDLRKL 799

Query: 813 MDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +  ++ +IQ G   ++ L  ++  K  +V I   E   +R   A DL R +AK L GGGG
Sbjct: 800 VLDVRGRIQGGRAAVVALFTVNNGKPLTV-IATNEPARERGLKAGDLVRTAAKTL-GGGG 857

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GG+P +AQ GG N     +A+  V
Sbjct: 858 GGKPDVAQGGGQNPAAIGEAVDAV 881


>gi|257884661|ref|ZP_05664314.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257820499|gb|EEV47647.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 880

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 362/913 (39%), Positives = 523/913 (57%), Gaps = 83/913 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LYITVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYITVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+   N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            D  LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDDALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   V+  + +++FDQTPFYAE
Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868
            + D  ++K  S I++L    +E K S+L  +T++  +    A DL + ++ KV   GGG
Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849

Query: 869 GGRPHMAQSGGPN 881
           GGRP MAQ+GG N
Sbjct: 850 GGRPDMAQAGGKN 862


>gi|302550143|ref|ZP_07302485.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467761|gb|EFL30854.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 890

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 354/924 (38%), Positives = 516/924 (55%), Gaps = 82/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFSRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSPQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DN+WSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+   E   K    IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYVRGEGTGKDSFEILGELPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I  + ++TG++Y    ++ V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYEIDTSMAVINKATELTGVRYGDAHDSDVSLRVVTDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE+  
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDTVIEMMGQQYPELITDRERIEKVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEENAFLKTLKAGTNILDTAVTDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G      +  + ++ GAT FIGY        
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADQAGATDFIGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T   S+IV  I+  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 469 --------------TDTESESTIV-GILVDGASSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   +  G  ++I D QK   G++VH  +V+ G +        +ID + R  ++  H
Sbjct: 514 GDTGKIKVDTGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRTAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIK-------GRPEELPEKV 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ         K  DV  ++ +  +V     + +L+ +
Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGIAVVTGQVPDGTTADDLRKL 799

Query: 813 MDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +  ++ +IQ G   ++ L  ++  K  +V I   E   +R   A DL R +AK L GGGG
Sbjct: 800 VLDVRGRIQGGRPAVVALFAVANGKPLTV-IATNEAARERGLKAGDLVRTAAKTL-GGGG 857

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GG+P +AQ GG N      A+  V
Sbjct: 858 GGKPDVAQGGGQNPAAVGDAVDAV 881


>gi|282880930|ref|ZP_06289621.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305153|gb|EFA97222.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 875

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 333/917 (36%), Positives = 513/917 (55%), Gaps = 75/917 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH ++ S+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 3   MMTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 63  RADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVGVLHL 122

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D EA K W+K   L AD II    +DNFW M +TGPCGPC
Sbjct: 123 DPKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPC 180

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + +     LPG    +++  + IEIWN+VFMQF ++       L    IDTGM
Sbjct: 181 SEIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLI 286
           G ER+  +LQ K +NYD D+F+  I   E+++G KY E  ++ V  RV+ DHLR+ +F I
Sbjct: 241 GFERLVRMLQGKNSNYDTDIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL+  + 
Sbjct: 301 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRE 360

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL++G+ LL   +  L   GK +I +G+ AF+L+DT+G PLD+ +
Sbjct: 361 LIGKVMKEEEDSFLRTLEKGINLLSNAMDELKKAGKTQI-DGEQAFRLFDTYGFPLDLTE 419

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            ++C      +D   F+  +++Q+ RAR       +      W  +++  G  QF+GYD 
Sbjct: 420 -LICREHGFSVDEQQFHAEMQKQKDRARN-----AAQVENSDWVEIRQ--GEQQFVGYDY 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                 + + RKV  +K                                EV+ D TPFY 
Sbjct: 472 TEYECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYG 503

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G  + +   + + D  K+     +H  I+++     E   +  ++   R  
Sbjct: 504 EMGGQVGDQGVLVSEHETVDVIDT-KRENNQSIH--IIKQLPQHPEADFMACVETDKRDA 560

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VND+
Sbjct: 561 CAANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNDL 620

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I Q++P+   R    E+A   GA AL G KY D+VRVV          S   CGG H  S
Sbjct: 621 IRQDIPLDEHRDTPIEEAKEMGAVALFGEKYGDKVRVVRFG------PSCEFCGGIHAKS 674

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I L  I+SESS+ AG+RR EAITG++    +   ++ +K++ S    ++ ++ G +E
Sbjct: 675 TGRIGLFKIISESSVAAGVRRFEAITGRQCEEAMYAIEDTVKAIRSLFNNAK-DLKGVIE 733

Query: 762 EIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQ 817
           +  +E+  +  ++   + +     +D    +   VN ++ I  +  +D    K ++  ++
Sbjct: 734 KYMDEHATMRKEIEQFQAQAVQRTKDELIKRAETVNGVTVIKAVLPIDGNAAKDLVFKIR 793

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875
           + I S ++ ++G + ++K  + +++++D++     NA  + R +AK++  GGGGG+PH A
Sbjct: 794 EAIPSHLLCVIGSTAQQKPLLSVMLSDDMVKEQGLNAGQMVREAAKLI-QGGGGGQPHFA 852

Query: 876 QSGGPNGNKADQAIAGV 892
            +GG N +    A+  V
Sbjct: 853 SAGGKNVDGISAAVDKV 869


>gi|23099464|ref|NP_692930.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|33301696|sp|Q8EPS9|SYA_OCEIH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|22777693|dbj|BAC13965.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 879

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 340/914 (37%), Positives = 527/914 (57%), Gaps = 68/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F++FF++  H + PS+SL+P  DPTL++ NSG+   K  F G+  P    +   
Sbjct: 7   AEIRQMFIDFFKEKSHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPDNPRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ A++ AW+ LT E   + D+
Sbjct: 67  QKSIRT----NDIENVGYTARHHTFFEMLGNFSIGDYFKKEAMEWAWEFLTDEKWINFDE 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ ED+EA+ +W    G+  ++IIRI   +NFW + E GP GP +EIF+D+GE 
Sbjct: 123 ALLSVTVHPEDDEAYDIWLNDIGIPKERIIRI--EENFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E  RY+E+WNLVF QF          LPK +IDTGMGLER+ ++
Sbjct: 180 YGNDPQDPELYPGG--ENNRYLEVWNLVFSQFNHNPDDTYTPLPKKNIDTGMGLERLTSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPA 293
           +Q+   N++ DLF  +I+ +E+++  KY GN+     + +VI DH+R+ SF I DG +P+
Sbjct: 238 IQQVPTNFETDLFMPIIRETERISKRKY-GNSEAEDTSFKVIADHIRTVSFAIGDGAMPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +A+ LG  EP M  L+P +   M   YPE+ +    I   ++ 
Sbjct: 297 NEGRGYVLRRLIRRAIRFAKDLGVNEPFMYQLVPVVGDIMKDFYPEVQKDAGYISNVIKV 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL+ GL++L  ++    K   E+  G+  F+LYDT+G P ++ ++ +  +G  
Sbjct: 357 EEERFHETLNDGLIILASIIEEERKKGSEVFPGEEVFRLYDTYGFPKELTEEYVEQQGFT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ++   +++ + +QR RAR     + S   +   F+  E    + F+GYD L+       
Sbjct: 417 -VNQAGYDKEMNKQRERARNARQKVDSMQVQDTIFT--EINVDSTFVGYDQLQKE----- 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + ++A+V+    +EEA  G  + V   +TPFYAE+GGQ+ D 
Sbjct: 469 ------------------TTIEALVKDKNQIEEANQGDVLYVFLKETPFYAESGGQVADN 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     ++DVQK   G  +H   ++ G  +    +   ++   R  +  NH+ATH
Sbjct: 511 GWIYSENASAYVSDVQKSPNGDHIHQIEIKEGSFKINQPVHAVVERTFRNHVIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LGSHV+Q GS + P+ LRFD +H   +T+ EL+ IE  VN+ I ++LPV  
Sbjct: 571 LLHQALKDVLGSHVNQAGSLVRPERLRFDFSHFHGVTAEELQQIELKVNEKIWESLPVAI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV +     G +S  LCGG HV +T EI L  IV
Sbjct: 631 DSKKIDEAKAMGAMALFGEKYGDIVRVVQI-----GDYSIELCGGCHVINTAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEY 767
            E+ I AG RRIEA+T ++A  +L  + + L + A  LK S+  +  R+E    E+ +  
Sbjct: 686 QETGIGAGTRRIEAVTSKQAYDYLNTKLDLLHNSAQKLKTSEEQLPERIEGLQVELKDSQ 745

Query: 768 RKLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  + AK     N+E  S      +I+ V  ++  ++  D  +L+S+MD L++K+ SG
Sbjct: 746 KQVDSLSAKLS---NLEASSILDEVKEISGVPVLAQEVNVKDMNQLRSMMDELKQKLSSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L       K  ++  VT+D+L++  +A ++ + +A V  GGGGGGRP MAQ+GG + 
Sbjct: 803 VILLAA-ENNGKVQLVAGVTKDMLEKNMHAGNIVKQAATVC-GGGGGGRPDMAQAGGKDP 860

Query: 883 NKADQAIAGVASFL 896
           +K  +A+  V  ++
Sbjct: 861 SKIKEALQSVEQYI 874


>gi|315658110|ref|ZP_07910982.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315496439|gb|EFU84762.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 876

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 338/919 (36%), Positives = 507/919 (55%), Gaps = 75/919 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMAMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T++ ED EA+ LW    GL   +IIRI    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 DKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179

Query: 183 IPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V Q
Sbjct: 180 FGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLERMASVAQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
               NY+ DLF  +I+  E+V+G KY       V  +VI DH+R+ +F I+DG LPANEG
Sbjct: 240 NVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGALPANEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  ++SE+E
Sbjct: 300 RGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  GL +LD +++   L   EI NG  AFKLYDT+G P+++ ++I    G+  +D
Sbjct: 360 RFHETLQEGLSILDQLIAKAKLTTKEI-NGSDAFKLYDTYGFPIELTEEIATQEGIT-VD 417

Query: 415 IISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           + +F   +++QR RAR     + S+ + S         LK     ++F+GY+        
Sbjct: 418 METFENEMQQQRDRARQARQNSQSMQIQSEV-------LKNITTKSKFVGYE-------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T    + +  ++  G+ V  A +G  +  V  +TPFYA +GGQ+ 
Sbjct: 463 ---------------TTDYQTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H   ++ G +     +   ++   RR +  NHSA
Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTIQFGHVTVNSHVDANVNKDERRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T+ E++ +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNM-----APFSLELCGGIHVQNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYR 768
           I+SES   AG+RRIEA+TG+ A  +L G   K     ++LKV S   V+ +V ++ EE +
Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQRKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742

Query: 769 KLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
            +     +R  ++      N+ED    ++ ++N    + ++VD    K ++  MD  + K
Sbjct: 743 HVNKQLEQRNKEITTLKMGNIED----QVEEINGFKVLATQVDIANPKAIRETMDDFKSK 798

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +Q  II+L+    E K S++  V +    +  A D+ +  A ++ GG GGGRP MAQ GG
Sbjct: 799 LQDTIIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGG 856

Query: 880 PNGNKADQAIAGVASFLKK 898
                  +++  +  ++KK
Sbjct: 857 TQPENITESLRFIKDYIKK 875


>gi|238018985|ref|ZP_04599411.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748]
 gi|237864469|gb|EEP65759.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748]
          Length = 871

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 343/900 (38%), Positives = 505/900 (56%), Gaps = 59/900 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+ Y  + N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 KTNFETDLIYPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIESIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++EQR RAR   +              ++   AT  I +  L+  + + ED  V 
Sbjct: 414 GFEAAMKEQRERAREARVK-------------EDAKVATPDITF--LKDEELL-EDEAV- 456

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +S V  I +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G
Sbjct: 457 -----------TASSVLMIGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ 
Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I
Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEAITG+ A +        ++ +A  LK     V  R+ ++  E ++   +L  
Sbjct: 681 GSGVRRIEAITGRAALNAAKHDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELEQ 740

Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830
            ++++              I DV F++  +      EL+ + D  L +   SG++++   
Sbjct: 741 IRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGAA 800

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K  +A+
Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLAEAL 859


>gi|325265418|ref|ZP_08132142.1| alanine--tRNA ligase [Clostridium sp. D5]
 gi|324029419|gb|EGB90710.1| alanine--tRNA ligase [Clostridium sp. D5]
          Length = 879

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 352/896 (39%), Positives = 520/896 (58%), Gaps = 60/896 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDDAIKWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W K  G+ A++I +    DNFW    +GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+   K     L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGKGNYVELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++    Y  E N  V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDHVCRLADAAYGNEDNTDVSIRVITDHVRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM--GS--AYPELIQAKLLIEETLRSED 355
           VLRR++RRA  + RLL     +  + LPAL   +  GS   YPEL + K  I + +  E+
Sbjct: 301 VLRRLLRRACRHGRLLN----IEGNFLPALAETVIEGSKDGYPELEEKKDFILKVIAKEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  T+D+GLV+L  +++ + K  +  L+GD AFKLYDT+G P+D+ ++IL  + +  +
Sbjct: 357 EQFNNTIDQGLVILSDMIAGMEKRGEITLSGDDAFKLYDTYGFPIDLTKEILEEKEM-NV 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           D   F+ A+E QR  ARA + G+ +  G    ++ S+     +T F+GYD L        
Sbjct: 416 DEEGFHAAMEIQRKTARA-ARGVTNYMGADVTVYESIDPSITST-FVGYDNLV------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  +  + E+ E    G++  +   +TPFYA +GGQ  D+
Sbjct: 467 ----------------YESEITVLTSETEVAEALSDGERGTIFVKETPFYATSGGQEADS 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D  K   G   H   V +G+++T     L +D + R   + NHSATH
Sbjct: 511 GVIRTPEGEFKVEDTIKLLGGKIGHVGHVVKGMVKTGDKAELAVDARKRSLSARNHSATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL T+LG+HV Q GS +  D LRFD TH   ++  ELK +E+ VN+ IA+ LPV  
Sbjct: 571 LLQKALRTVLGTHVEQAGSSVNEDRLRFDFTHFSALSQEELKQVENIVNEHIAEALPVDI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A  +GA AL G KY D VRVV++     G  S   CGGTHV +T EIM   I+
Sbjct: 631 QNMPIEEARKTGAQALFGEKYGDIVRVVNM-----GGFSIEFCGGTHVKNTSEIMAFKII 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ + AG+RRIEA+T Q    +    + K+   A  LK S  N+  ++  +  E + L 
Sbjct: 686 SETGVAAGVRRIEALTSQGLLDYYDALEVKMNEAAKLLKASSDNLAEKITHVMAENKTLH 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L  + +        ++  V  ++  +  VD   L+ + D +++K+  G+++
Sbjct: 746 SEVESLKSRLAQDAMGDVMDQVREVKGVKLLAAEVDGVDMNGLRDLGDQMKEKLGEGVVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L   S + K S+++  T+  + +  +A +L +  A ++ GGGGGGRP+MAQ+GG N
Sbjct: 806 LASGS-DGKVSLMVTATDGAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMAQAGGKN 859


>gi|189463200|ref|ZP_03011985.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136]
 gi|189430179|gb|EDU99163.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136]
          Length = 872

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 343/926 (37%), Positives = 505/926 (54%), Gaps = 88/926 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGEC-IPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D         +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+A   ++G KY  +  V+   RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKAIGDLSGKKYGDDEKVDVTMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLLPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI   D AF LYDT G P D+ +
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLDKTMAETKAAGKTEISGVD-AFTLYDTFGFPFDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   GL   D+  F   +++Q+ RAR ++  + +G     W +LKE  G T F+GY  
Sbjct: 418 LILRENGLTA-DVKGFEAEMQKQKERAR-NAAAVETGD----WVTLKE--GETTFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V   TPF
Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLSDTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   + I D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQIGDTGVLVSEFETIDIIDT-KKENNLPIH--IAKKLPEHLEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHS THLL  AL  +LG+HV Q GS +TPD LRFD +H + +T  +++ +E  VN
Sbjct: 557 AACAANHSCTHLLDEALRQVLGAHVEQKGSLVTPDSLRFDFSHFQKVTPEQIREVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHV
Sbjct: 617 AKIRENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756
           S+TG+I ++ I+SESS+ AGIRRIEA+TG +         + +  L +    +   +  +
Sbjct: 671 SATGKIGMVKIISESSVAAGIRRIEAVTGAKVEEMFDTVQDAINDLKALFNNAPDLKAAI 730

Query: 757 VGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        EE+ K +    K KL    ++++  K+         +  + +  +K
Sbjct: 731 SKYIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVI------QAVLPMPADAVK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           ++   L+ +    + +++G   E K  + + +++D +    NA  L R +AK++  GGGG
Sbjct: 785 NIAFQLKGQFPENLFVVIGSVFENKPLLTVTMSDDQVKAGLNAGQLVREAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASF 895
           G+PH A +GG N +    A+  + S 
Sbjct: 844 GQPHFATAGGKNPDGLSAAVDKIVSL 869


>gi|317475197|ref|ZP_07934464.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA]
 gi|316908650|gb|EFV30337.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA]
          Length = 873

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 345/923 (37%), Positives = 510/923 (55%), Gaps = 87/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADSSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   DI  F+  +++Q+ RAR ++  + +G     W +L+E  G T+F+GY  
Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D+TPF
Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLDKTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756
           ++TG I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +    G +
Sbjct: 671 AATGNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSGAI 730

Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        E++ K +    K KL  N+++++  K+  + F + +I    +  +K
Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKV--IKFCAAMIP---ADAIK 785

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +    A+  V
Sbjct: 845 GQPHFATAGGKNPDGLSAAVDKV 867


>gi|150015988|ref|YP_001308242.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|205830028|sp|A6LSF6|SYA_CLOB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149902453|gb|ABR33286.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 879

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 332/901 (36%), Positives = 528/901 (58%), Gaps = 54/901 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  +L+FF+   H  + S SL+P ND +L+  N+GM P K  FTG ++P  + +TT
Sbjct: 6   TNDLREAYLKFFESKDHLRMDSFSLVPKNDKSLLLINAGMAPLKPYFTGLQEPPKRRITT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG T+RH TFFEMLGNFSF  YFK+  I  AW+ +T+  +L + 
Sbjct: 66  CQKCIRTG----DIENVGITSRHGTFFEMLGNFSFADYFKKEIIPWAWEFITEVLELPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F++ E I
Sbjct: 122 RLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFNRSEEI 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           P       +  + ++ IE WNLVF QF+   K     L   +IDTGMGLER+AT++QEK 
Sbjct: 181 PTNADEFVKLADEDKIIEFWNLVFTQFDGDGKGNYEKLANTNIDTGMGLERLATIMQEKN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + ++ID  ++++    ++  +KY  N    ++ R+I DH+RS +F+I+D ++P+NEGRGY
Sbjct: 241 SIFEIDTLENILSEVAKLANVKYGENQKTDISLRLITDHIRSITFMISDDVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG  E  + +L   +  +   AYPEL   K  I++ ++ E+++F 
Sbjct: 301 VLRRLLRRAARHGKTLGIKEAFLCNLCDTVIRDSSEAYPELNSKKEYIKKVIKIEEDKFR 360

Query: 360 KTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLD G+ +L+G +S L  K+E +L+G   FKLYDT G P+++ ++IL   GL+ +D  +
Sbjct: 361 ETLDSGMEILNGFISELKAKNEKVLSGVDGFKLYDTFGFPMELTKEILEDEGLS-LDEDA 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F++ ++ QR RAR A  +    GT  K    +  +   T F GYD               
Sbjct: 420 FHEEMKVQRERARSARKVSNYMGTDVKTLDIIPAEV-ETVFDGYD--------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    + +++ VK +++  +  +    G K  +V D TP YAE GGQ+GDTG    
Sbjct: 464 --------NDTLNAEVKVLIEGEDFTDAITEGNKAIIVTDVTPLYAEMGGQIGDTGVIFN 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG +  + D +K   G  VH   V  G L+   ++ + +D   R  +  NH+ATHLL  A
Sbjct: 516 DGFKANVLDTKKNIGGKIVHFVEVVSGELKVGDTVTIEVDKVRRENIKKNHTATHLLDKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L+ +LGSHV Q GS ++ D LRFD +H + +T  E+  +ED VN+ I    PVVT +M+ 
Sbjct: 576 LTEVLGSHVHQAGSYVSNDRLRFDFSHFEAMTEEEINKVEDLVNEAITSVTPVVTEVMDL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A  SGA  +   KY D+VRVVS      G +S  LCGGTH+ +TG+I L  I+SES I
Sbjct: 636 QEAKNSGAIGIFDDKYADKVRVVS-----AGEYSKELCGGTHIDNTGKIGLFKIISESGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQL 772
            AG RRIEA+ G+ A   +  + + LK +++ LK S+  ++ +    V+E+ E+ +++  
Sbjct: 691 AAGTRRIEAVIGKEAYKIVNEKKDLLKEISTKLKCSEKELLAKLDQQVKELKEKDKEITA 750

Query: 773 IHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + +K    + ++D+  S   + D+N +S+ + +VDS  L+ V + ++ K  + I++L+  
Sbjct: 751 LKSKFA-SMGIDDIVSSSRNVKDINVISYELKDVDSDTLRDVCEKVRDKAPNSIVLLMS- 808

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQA 888
           +   K  +  + T+D + +       +L  ++  + GGGGGGRP MAQ+GG    K  +A
Sbjct: 809 ANAGKVIICAMATKDAVAK--GAHCGKLIKEISSMLGGGGGGRPDMAQAGGKMPEKIQEA 866

Query: 889 I 889
           I
Sbjct: 867 I 867


>gi|325954950|ref|YP_004238610.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437568|gb|ADX68032.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 869

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 331/914 (36%), Positives = 506/914 (55%), Gaps = 73/914 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FFQ+  H ++ S+ ++  +DPTLMF NSGM  FK  F G   P    +   QK
Sbjct: 6   IRKEFLNFFQQRNHLIVDSAPIVLKDDPTLMFNNSGMAQFKEYFLGNATPKSNRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDLD+VG+   HHT FEMLGN+SFG YFK+ AI  AW+LLT  + + + ++Y
Sbjct: 66  CLRVSGKHNDLDDVGKDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTGTYGIGKDQIY 125

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV++ DE        EA  LWK+   ++ D+I+     DNFW M + GPCGPCSEI  D
Sbjct: 126 VTVFEGDEKDGTQLDQEALDLWKE--HIAEDRILLGNKKDNFWEMGDVGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               +      G    +++  + IEIWNLVFMQ++++       LP   IDTGMG ER+A
Sbjct: 184 IRPEEERLAVDGKSLVNQDHPQVIEIWNLVFMQYQRRADGSLEPLPAKHIDTGMGFERLA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292
            VLQ KT+NYD D+F+ LI+  E+++G+ Y  N I +   RV+VDHLR+ SF IADG LP
Sbjct: 244 MVLQGKTSNYDTDVFRPLIKKLEKISGITYGDNEITDIAIRVVVDHLRAVSFAIADGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N G GYV+RRI+RRA+ Y  R L   EP +  L P L  EMG  +PELI+ + ++   +
Sbjct: 304 SNTGAGYVIRRILRRAISYGYRFLNLKEPFIYLLFPILKDEMGDFFPELIKQESIVTGVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+  F +T++ GL  L+ ++      +++ G V F+LYDT+G P D+ + ++      
Sbjct: 364 REEESSFLRTIEHGLNRLNQIIDQYQDTKVVPGHVVFELYDTYGFPADLSRIVVEDHNFT 423

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   + +Q++R++       +      W  ++E     +F+GYD+L     +  
Sbjct: 424 -IDEDGFEVEMSKQKARSKK-----ATALETDDWVIVREN-ANEEFVGYDILSTEVQITR 476

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
            RKV  +K                            G+  ++V D+TPFYAE+GGQ+GDT
Sbjct: 477 YRKVKNKK----------------------------GEFYQLVLDKTPFYAESGGQIGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  I    ++++ +  KK   + +H   VE+     E +    +D   R +   NHSATH
Sbjct: 509 GLLISANEQIEVLNT-KKENNLIIH--FVEQLPSNIEATFQAEVDSITRNETQKNHSATH 565

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-V 650
           LLH AL T+LG+HV Q GS + PD LRFD +H   +T+ E+  +E  VND I  ++P+  
Sbjct: 566 LLHEALRTVLGTHVEQKGSYVGPDYLRFDFSHFGKMTTEEIAEVEKIVNDRIVASIPLDE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R +  ++A++ GA AL G KY D VR++          S  LCGGTHV +T +I L  I
Sbjct: 626 KRNIPFDEAVSQGAMALFGEKYGDYVRLIKFG------SSVELCGGTHVKNTSDIRLFKI 679

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SESS  AGIRRIEAIT   A   L   ++  +S+   LK ++ +    V+++ +E  +L
Sbjct: 680 TSESSTAAGIRRIEAITSNAAIDVLKEAEKNYQSVLDTLK-TKSDAKKAVQQLLDENAQL 738

Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                + +  + K +          I  + F++ I ++++++  K     L  ++ +  +
Sbjct: 739 KKQVEKFVAQQAKAEKENWKQQVKNINGIQFLA-IKTDLNTQSAKQNAIDLTNELDNAFV 797

Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            +V      K S+ I + ++L++  + NA  + R  AK +  G GGG+  +A +GG +  
Sbjct: 798 -VVATKDAVKPSITISIAKNLVEEKQLNAGQIVREIAKNI-QGSGGGQAFLATAGGKDVT 855

Query: 884 KADQAIAGVASFLK 897
             D+A+A   +F++
Sbjct: 856 GIDKALAQAETFVQ 869


>gi|239932415|ref|ZP_04689368.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291440781|ref|ZP_06580171.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343676|gb|EFE70632.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 889

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 352/922 (38%), Positives = 512/922 (55%), Gaps = 79/922 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSAQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DNFW M   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYQDDDEAEQIWHEVVGVPKERIQRLGKKDNFWDMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMA 234
           G    G   G +   ERY+EIWNLVFMQ+E+     +       LP  +IDTG+GLER+A
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGPGKDYPILGDLPSKNIDTGLGLERLA 237

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
            +LQ   N Y+ID    +I  + ++TG++Y       V+ RV+ DH+R+S  LI DG+ P
Sbjct: 238 MILQGVQNMYEIDTSMAVIDKATELTGVRYGDAQASDVSLRVVTDHMRTSVMLIGDGVTP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE+   
Sbjct: 298 GNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELITDRERIEKVAL 357

Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+  F KTL  G  +LD  +S        +L GD AF L+DT G P+D+  ++   +GL
Sbjct: 358 AEENAFLKTLKAGTNILDTAVSDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFM 469
           + +D   F + ++EQR RA+A +    +G  +   +  + ++ GAT FIGY         
Sbjct: 418 S-VDEEGFRRLMKEQRERAKADARAKKTGHADLGAYREIADRAGATDFIGY--------- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T G S++V  I+  G     A  G +VE+V D+TPFYAE GGQ+G
Sbjct: 468 -------------THTEGESTVV-GILVDGVPSAAATEGDEVEIVLDRTPFYAEGGGQIG 513

Query: 530 DTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           DTG    D G  +++ D QK   G++VH  +V+ G +  +     +ID + R  ++  HS
Sbjct: 514 DTGRIRTDSGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVDAKAHASIDARRRTAIARAHS 573

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL H AL   LG   +Q GS   P   RFD      +    +  +E  +N+++A++L 
Sbjct: 574 ATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPQTVMLDVEQKINEVLARDLD 633

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L+
Sbjct: 634 VRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGLV 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767
            ++ ESSI +G+RRIEA+ G  A   L  +   +  L   LK       GR EE+ E+  
Sbjct: 689 KLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVNQLTELLK-------GRSEELPEKVS 741

Query: 768 ----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVM 813
                     ++++   A++ LQ         K  DV  ++ +  +V     + +L+ ++
Sbjct: 742 AMLGRLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGVAVVTGQVPDGTTADDLRKLV 799

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGG 870
             ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGGG
Sbjct: 800 LDVRGRIQGGRAAVVALFTTVNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGG 858

Query: 871 RPHMAQSGGPNGNKADQAIAGV 892
           +P +AQ GG N     +A+  V
Sbjct: 859 KPDVAQGGGQNPAAIGEAVDAV 880


>gi|239978415|ref|ZP_04700939.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291450311|ref|ZP_06589701.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353260|gb|EFE80162.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 890

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 348/924 (37%), Positives = 515/924 (55%), Gaps = 82/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+  P     T+V
Sbjct: 4   AEIRRRWLRFFEERGHAVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEATPPAPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTSQEQGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA  +W++  G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   ++K+   IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEDKENFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ+  N Y+ID  + +I  + ++TG++Y  +    V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQDVRNLYEIDTSRIVIDKATELTGVQYGADQASDVSLRVVTDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  I    
Sbjct: 298 PGNEGRGYVLRRIMRRAVRNMRLLGATGPVVAELVDTVIESMGQQYPELITERKRILTVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F K L  G  +LD  ++        +L+GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKAAGSTVLSGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT F GY        
Sbjct: 418 LS-VDEPGFRRLMKEQRERAKADARAKKTGHADLSAYREVADAAGATDFTGYLA------ 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S++V  +V  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 471 ----------------TEGESTVVGLLVD-GVSSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG     +G  +++ DVQK   G+ VH  +V+ G +         ID   RR ++  H
Sbjct: 514 ADTGRIRFDNGAVVEVRDVQKPVPGVHVHKGVVQVGEVTVGSPAYAAIDVGRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      +  A L  +E  +N+++A++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPGAVLTDVEQKINEVLARDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKV 741

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKSV 812
               ++   ++ +  +E     K+            DV   + +   V     + +L+ +
Sbjct: 742 SA--MLGKLKEAEKEIERFRAEKVLQAAAGLAAGAQDVRGTALVTGRVPDGTGADDLRKL 799

Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +  ++ +I   +  ++ L  ++ ++  +V +   E   +R   A DL R +AK L GGGG
Sbjct: 800 VLDVRGRIPADRPAVVALFTVANDRPLTV-VATNEAARERGLKAGDLVRTAAKTL-GGGG 857

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GG+P +AQ GG N    D+A++ V
Sbjct: 858 GGKPDVAQGGGQNPQAIDEAVSAV 881


>gi|315022567|gb|EFT35594.1| alanyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325335524|gb|ADZ11798.1| Alanyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 867

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 337/906 (37%), Positives = 516/906 (56%), Gaps = 89/906 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +   QK
Sbjct: 6   IRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKREAIAFAWELLTEVYKIPKENLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        + D+EA+  WK  S ++ D+I+     DNFW M E+GPCGPCSEI  D
Sbjct: 126 VTIFEGDATENLERDQEAYNCWK--SYIAEDRILNGNKKDNFWEMGESGPCGPCSEIHID 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     + G    +++  + IE+WNLVFM+F ++       LP   +DTGMG ER+ 
Sbjct: 184 LRSEEEKSKVSGKDLVNQDHPQVIEVWNLVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGI 290
             LQ KT+NYD D+F  LI   EQ++  KYEG       +  RV+VDH+R+ SF IADG 
Sbjct: 244 MALQGKTSNYDTDVFTPLIAKVEQLSHKKYEGLLDNEKDIAIRVVVDHIRAVSFAIADGQ 303

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N G GYV+RRI+RRA+ Y+ R L   E  +  L+  L  +MG+ +PE+ + + L+ E
Sbjct: 304 LPSNTGAGYVIRRILRRAISYSYRFLDMKEAFLYELVAVLKNQMGAFFPEIEKQEKLVTE 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++ E+  F KT++ GLV L+ ++    K  ++ L G   F+LYDT+G P D+ + I   
Sbjct: 364 VIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSRIIAEE 423

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465
           +GL  +D   F++ +E+Q+ R++  S        +K+  W +LK++     F+GYD L  
Sbjct: 424 KGLT-VDEKGFDEEMEKQKQRSKKSS-------AQKVYDWVTLKDE--TESFVGYDQLEH 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
             F+ + RK+                            E   G   +VVF+QTPFYAE G
Sbjct: 474 KVFITKYRKL----------------------------ENKDGVFYQVVFNQTPFYAEGG 505

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G    +  + ++ D +K+     ++ ++++      E      +D + RR    
Sbjct: 506 GQVGDKGYIESEEGQFEVLDTKKENN---LNISLIKDLPQAPEKEFTAVVDSRLRRNTQA 562

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  +LG+HV Q GS +  D LRFD +H   ++  E+  +E+ VN  I +
Sbjct: 563 NHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAKIKE 622

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N+ +   R +  ++A+  GA AL G KY D VR++          S  LCGGTH  ST E
Sbjct: 623 NISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFG------SSKELCGGTHAKSTSE 676

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSESS  AGIRRIEAI+ ++A ++    +E++  L+  LK    +V   VE++ 
Sbjct: 677 IGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVEKLL 734

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMSH-------IISEVDSKELKSVMDA 815
           EE +KL     K +L+   ++L+ ++ AD    F+S         ++ +D+  +K ++  
Sbjct: 735 EENQKL-----KSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQ 789

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L+K++ + +I+++  + + K  + + V++DL D +NA  + +  AK + GGGGG  P  A
Sbjct: 790 LKKEVPTSVIVILSDAND-KPMISVGVSDDLGDSYNAGVIVKELAKEIQGGGGGN-PGFA 847

Query: 876 QSGGPN 881
            +GG N
Sbjct: 848 TAGGKN 853


>gi|160933050|ref|ZP_02080439.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753]
 gi|156868124|gb|EDO61496.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753]
          Length = 877

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 334/912 (36%), Positives = 509/912 (55%), Gaps = 57/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L+FF+  GH  LPS SL+P  D +L+  NSGM P K  FTG+  P    V
Sbjct: 4   TGLNELREKYLQFFESKGHLRLPSFSLVPNGDKSLLLINSGMAPMKKYFTGEVTPPRNRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++ VG T RH T+FEMLGNFSFG YFK  A   AW+  TK  +L 
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTYFEMLGNFSFGDYFKHEATAWAWEFCTKVLELP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+++++Y +D+EAF +W K  G+   +I+R+   DNFW    TGPCGPCSE++FD+GE
Sbjct: 120 VERIWVSIYQDDDEAFDIWTKEVGVDPSRIVRLGKEDNFWEHG-TGPCGPCSELYFDRGE 178

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WNLVF QF+   +     L   +IDTGMGLER+A ++Q 
Sbjct: 179 EYGCGSPTCGVGCDCDRYVEFWNLVFSQFDNDGQGNYTPLEHKNIDTGMGLERLACIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N + +D  +++++   ++ G++Y  +    ++ RV+ DH+RS++F+I DG++P+NEGR
Sbjct: 239 VDNLFLVDTVQNIMKHISKIAGVEYGADPKTDISLRVVTDHIRSTTFMIGDGVMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG   P +  +   +  E  SAYPEL++ +  I++ +  E+E 
Sbjct: 299 GYVLRRLLRRAARHGRLLGIRRPFLAEVCDTVINENQSAYPELVEKRDFIKKLISVEEEN 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +T+D+GL +L G L    + +IL+G  AF+L DT+G PLD+ ++I+  +G+  +D   
Sbjct: 359 FDRTIDQGLQIL-GALIENSEKKILSGAEAFRLNDTYGFPLDLTKEIIAEKGMT-VDESE 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLK---EKYGATQFIGYDLLRGSKFMKEDRK 474
           F + L EQR+RAR      G+      W S     +   AT+F GY  L      K+  +
Sbjct: 417 FQRLLSEQRTRARNARKNAGADA----WLSESVDLDGIPATEFTGYATL------KDTAR 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           +L                 AI++ GE VE A     V VV D+TPFYAE+GGQ+GDTG  
Sbjct: 467 IL-----------------AILRDGERVESAEMNDDVVVVLDRTPFYAESGGQVGDTGFL 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHA--IVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                R  + D  K   G+F+HH   +VE   + +E+  V  +D   R  +  NH+A HL
Sbjct: 510 TDGAGRFAVLDTTKHHSGVFLHHCHVVVEGLSVGSEVECV--VDGIRRYNIMRNHTAAHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q G  +    +RFD TH   +T  E   +E+ VND I   + V + 
Sbjct: 568 LQAALRKVLGTHVEQAGQLVDGQRVRFDFTHFSALTKEETARVEEIVNDEILSAVQVTST 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A   GA AL G KY D VRVV       G  S+  CGGTHV++T  + L  I+S
Sbjct: 628 EMPIEEAKKLGAMALFGEKYGDIVRVVQA-----GEFSTEFCGGTHVNNTARLGLFKIIS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL- 770
           ESS+ +G+RRIE +TG+    H+    + ++  +S LK++    +    E +  E ++L 
Sbjct: 683 ESSVASGVRRIEGVTGRGVLQHMAEDAKTIQDASSALKLNNPAELPEACEHLLSEQKELR 742

Query: 771 -QLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L  A  +L    V+ L  S   +  V  ++   S   +  L+++ D +++   + + +
Sbjct: 743 RELEKANARLANWQVDGLFDSAEMVKGVKIITGSFSSTTADALRTMSDRVRENAPNSVAV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              I+  K         E      +A ++ R +AKV  GG GGG+P  A +G  +  K D
Sbjct: 803 FAAINDGKAVLSATAGKEAQQKGCHAGNIVRAAAKV-AGGNGGGKPDFAMAGAKDLTKID 861

Query: 887 QAIAGVASFLKK 898
           +A+A V + + +
Sbjct: 862 EALAAVNTIVSE 873


>gi|291544162|emb|CBL17271.1| alanyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 883

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 336/912 (36%), Positives = 506/912 (55%), Gaps = 62/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL FF+  GH  + S+SLIP  D +L+  NSGM P K  F GQ  P    VTT
Sbjct: 6   LNELREKFLSFFESKGHTRMDSASLIPQGDNSLLLINSGMAPLKKYFLGQATPPNVRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG+T RH T+FEMLGNFSFG YFK  AI+ AW+  TK  +L   
Sbjct: 66  CQKCIRT----PDIERVGKTARHGTYFEMLGNFSFGDYFKTEAIEWAWEFFTKVLELPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY++VY++D+EA+ +W K  G++ D + R+   DNFW    +GPCGPCSEI+FD+G   
Sbjct: 122 KLYVSVYEQDDEAYDIWIKHIGVAPDHMTRLGKEDNFWEHG-SGPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +R++E+WNLVF QF    K     +   +IDTGMGLER+A V+Q   
Sbjct: 181 GCGSPDCKVGCECDRFVEVWNLVFSQFNSDGKGHYAEMEHKNIDTGMGLERLACVMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  ++++Q   ++ G+ Y+ +    V+ RVI DH+RS++F++ DG+ PANEGRGY
Sbjct: 241 NLFEVDTVQNIMQHICRIAGITYKEDPKKDVSLRVITDHVRSTTFMVGDGVTPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VL+R++RRA  + ++LG  EP +  +   +  E  +AYPEL + K LI + +R E+E F 
Sbjct: 301 VLKRLLRRAARHGKMLGIQEPFLYQVAETVIHENENAYPELAEKKDLICKIIRHEEESFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+G  LL+  L  +  D +  L+G  AFKL DT+G PLD+  +I   RG+  +D   
Sbjct: 361 KTIDKGTELLNMFLDRVSSDSLSMLSGADAFKLSDTYGFPLDLTMEIAAERGIK-VDEDK 419

Query: 418 FNQALEEQRSRARAH--SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR-GSKFMKEDRK 474
           F + +E+Q+S ARA   S    S + E I      K   T+F+GY  +  G+K +     
Sbjct: 420 FRELMEQQKSMARADRASKVKTSWSNESIADISAPK---TEFVGYTQMSCGAKIL----- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                               I   G+ V+    G    ++ D+TPFYAE+GGQ+ DTG  
Sbjct: 472 -------------------GIFADGKQVDSIREGDVAALILDRTPFYAESGGQVADTGEI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +G+G    + DV+K   G F+H   +E GIL+    +   ID   R  +  NH+A HLL 
Sbjct: 513 VGNGA-FAVADVKKLESGHFMHMGSLEDGILKVGDEVSAQIDADRRMSIMRNHTAAHLLQ 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q G  +  +  RFD +H   +TS EL+++ED VN  I + LP+  + M
Sbjct: 572 AALRQVLGDHVHQAGQLVNAEHCRFDFSHFNAMTSEELQAVEDLVNRKIFEALPITMQEM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY + VRVVS+E       S+  CGGTH+ +T  + L  I+SES
Sbjct: 632 PIEEARKLGAMALFGEKYGNIVRVVSMEG-----FSTEFCGGTHLDNTSRVGLFKILSES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773
           S+ AG+RRIEA+TG           ++L   AS LK+     +V R   +  E ++ +  
Sbjct: 687 SVAAGVRRIEAVTGTGVLKSYQEMQQRLHFAASALKLGNPLELVERCTAMIAELKEKE-- 744

Query: 774 HAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII- 825
           H    L + + D        +  +I+ V  +S   +   +  L+ + D ++ ++   I+ 
Sbjct: 745 HQIDALNMKIADSQISGLFENAKEISGVRVISAFFNGTGADMLRQMGDQVKDRLDGNIVA 804

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLA-RLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +  G++ EK     +   E +    +A  +  R+SA  + GG GGGRP  A +G      
Sbjct: 805 VFAGMNGEKGTFYCVCGKEAVKKGAHAGKIVQRVSA--ITGGKGGGRPDSAMAGIGKQYM 862

Query: 885 ADQAIAGVASFL 896
            D+A+A + + +
Sbjct: 863 VDEALAALDAIV 874


>gi|254415207|ref|ZP_05028969.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196178013|gb|EDX73015.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 877

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 347/902 (38%), Positives = 512/902 (56%), Gaps = 64/902 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+ K  H++LPS+SL+P +DPT++ T +GM+PFK IF GQ +  +   TT 
Sbjct: 11  NQIRQKFLDFYDKRQHQVLPSASLVP-DDPTVLLTIAGMLPFKPIFLGQRQSDFSRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T  F+L   R
Sbjct: 70  QKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTNVFELPPER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EAF +W+   G+ A +I R+   DNFW+   TGPCGPCSEI++D      
Sbjct: 126 LIVSVFREDDEAFAIWRDKIGIPAHRIQRMGEEDNFWASGPTGPCGPCSEIYYD-FHPEK 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTG+GLERMA +LQ+  NNY
Sbjct: 185 GDKDIDLEDDTRFIEYYNLVFMQYNRDADGNLTPLQNKNIDTGLGLERMAQILQQVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + ++  + Y  ++    V+ +VI DH+R+   LIADGI  +N GRGY+L
Sbjct: 245 ETDLIFPIIKTAAEIAELDYAKSDEKTKVSLKVIGDHIRAVVHLIADGITASNIGRGYIL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G        +           YP + +    I+  L+ E+ +F KT
Sbjct: 305 RRLIRRVVRHGRLIGIQGEFTTQVADTAIALAEDTYPNVRERNDAIQAELQREESQFRKT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG  LL  +L+   K E ++G  AF LYDTHG PL++ Q+I    GL  +DI  +  A
Sbjct: 365 LARGEKLLADILAQ--KPEQISGRDAFTLYDTHGFPLELTQEIAEEHGLT-VDIAGYEAA 421

Query: 422 LEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++EQ+  ++A       L  G+ +++   +     AT+F+GY +                
Sbjct: 422 MKEQQENSQAAHETVDLLAQGSLDEVTSGV----AATEFLGYTV---------------- 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     ++ V A+V +GE VE A +G +V+VV DQTPFYAE+GGQ+GD G   GD 
Sbjct: 462 -------PATTAQVMALVAEGESVESAQTGTEVQVVLDQTPFYAESGGQIGDRGYLSGDN 514

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + ++I DV+K+++  FVH   VERG L    ++   ID   RR+   NH+ATHLL  AL 
Sbjct: 515 LVVRIDDVKKESD-FFVHFGRVERGTLNLGDTVTAQIDRACRRRAQANHTATHLLQAALK 573

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            I+   +SQ GS +  D LRFD   S+ +TS EL  IED +N  IA+       IM   D
Sbjct: 574 KIVDPSISQAGSLVAFDRLRFDFNCSRSLTSEELTQIEDQINTWIAEAHGADVAIMPLTD 633

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA A+ G KY D VRV+       GV S  LCGGTHV++T EI +  IV+E+ + +
Sbjct: 634 AKAKGAIAMFGEKYADEVRVIDFP----GV-SMELCGGTHVNNTAEIGVFKIVAETGVAS 688

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAK 776
           GIRRIEA+ G     +L  +D+ +K L+   KV    +  R+  +  E +  Q  L   K
Sbjct: 689 GIRRIEAVAGPAVLDYLNLRDKVVKELSDRFKVKPEEIPDRITNLQNELKASQKELEAVK 748

Query: 777 RKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++L L   D        + +   +   + +++   LK+  + LQ+K+    ++L  +  E
Sbjct: 749 QELALAKSDQVLSQAESVGEFKVLVANLGDIEPDALKTAAERLQQKLGDSAVVLGSVPTE 808

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGG------GGGGGRPHMAQSGGPNGNKADQ 887
            K S++   +  +       D    + K +GG      GGGGGRP++AQ+GG + +K  +
Sbjct: 809 GKVSLVAAFSAKIYK-----DKQLQAGKFIGGIAKLCGGGGGGRPNLAQAGGRDASKLPE 863

Query: 888 AI 889
           A+
Sbjct: 864 AL 865


>gi|294811565|ref|ZP_06770208.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326440050|ref|ZP_08214784.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324164|gb|EFG05807.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 889

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 352/924 (38%), Positives = 523/924 (56%), Gaps = 82/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLINAGMVPFKPYFLGETKPPFPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVEDGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + K++  IL   P  +IDTG+GLER+
Sbjct: 179 GPAF-GAEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + ++  + ++TG++Y  ++   V+ RVI DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRIEAVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+ RF KTL+ G  +L+G ++        +L GD AF L+DT G P+D+  +I   +G
Sbjct: 358 LAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR++A+A +    +G  +   +  + +  GAT+F GY        
Sbjct: 418 LS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGY-------- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S+IV  +V  G     A  G +VEVV D+TPFYAE GGQL
Sbjct: 469 --------------AATEGESTIVGLLV-DGVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR ++  H
Sbjct: 514 ADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS  +P   RFD      +  + L  +E  +N+++++ L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVLSREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E  
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPE-- 739

Query: 768 RKLQLIHAKRK-LQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKS 811
            K+  + AK K  +  +E     K+            D++ ++ +   V+    + +L+ 
Sbjct: 740 -KISGMLAKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRR 798

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGG 868
           ++  ++ +I      +V +        L V+  +   R     A DL R +AK L GGGG
Sbjct: 799 LVLDVRGRIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLKAGDLVRTAAKTL-GGGG 857

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GG+P +AQ GG N     +AIA V
Sbjct: 858 GGKPDVAQGGGQNPEAVGEAIAAV 881


>gi|163814106|ref|ZP_02205498.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759]
 gi|158450555|gb|EDP27550.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759]
          Length = 887

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 347/901 (38%), Positives = 511/901 (56%), Gaps = 44/901 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEF +  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+SAD+I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVSADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G++YE ++   V+ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   +  E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELCEKKEYIFNKIDKEEESFN 360

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L   +  +    +++L+GD AFKLYDT+G PLD+ ++I+   G+  +D   
Sbjct: 361 KTIDTGLAILKDYIEETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEIIEEEGIE-VDEAR 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRGSKFMKEDRKV 475
           F + +  Q+  AR A       G    ++  L      ++F+GYD L   SK        
Sbjct: 420 FTECMNIQKETARNARQTTTYMGADATVYEQLPVDM-TSEFVGYDKLTYKSK-------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                   +T   + + +   ++  + +    G +  ++  +TPFYA  GGQ+GD G   
Sbjct: 471 --------ITAITTELGEGKDKKSVLADTVSEGAQATIIVPETPFYATMGGQIGDKGIIK 522

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                  + D  K   G   H   VE G L       LT+D +NR  +  NHSATHLL  
Sbjct: 523 TKNGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQK 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + P  LRFD +H + +T  E+K +ED VN+ I  ++PV T IM 
Sbjct: 583 ALKMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDVPVCTDIMT 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV++TG I +  IVSE+ 
Sbjct: 643 VDEAKKTGAMALFGEKYGEKVRVVSI-----GDFSKEFCGGTHVANTGVIGMFKIVSETG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG RRIEA+T   A  +    + +L   A   K     V  R+E++  E ++L   + 
Sbjct: 698 VAAGTRRIEALTSIGALEYYRSMESELVEAAKAAKTDIHGVAARIEQLLAEVKELTNENK 757

Query: 776 KRKLQLNVE---DLSCHKIAD--VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K ++  E   D+  + I    +  ++  I + D   L+++ D  + K+   I++L   
Sbjct: 758 KLKDKMAKEAAGDVLSNAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSIVVLAS- 816

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +K+ K +++ + T+  + +  +A ++ +  A ++ GGGGGGRP+MAQ+GG + N  D A+
Sbjct: 817 AKDGKVNLIAMATDGAVAKGAHAGNIIKAVAGLV-GGGGGGRPNMAQAGGKDPNGIDAAL 875

Query: 890 A 890
           A
Sbjct: 876 A 876


>gi|313207039|ref|YP_004046216.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312446355|gb|ADQ82710.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
          Length = 867

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 336/906 (37%), Positives = 516/906 (56%), Gaps = 89/906 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +   QK
Sbjct: 6   IRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKKEAIVFAWELLTEVYKIPKENLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        + D+EA+  WK  S ++ D+I+     DNFW M E+GPCGPCSEI  D
Sbjct: 126 VTIFEGDATENLERDQEAYNCWK--SYIAEDRILNGNKKDNFWEMGESGPCGPCSEIHID 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     + G    +++  + +E+WNLVFM+F ++       LP   +DTGMG ER+ 
Sbjct: 184 LRSEEEKSKVSGKDLVNQDHPQVVEVWNLVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGI 290
             LQ KT+NYD D+F  LI   EQ++  KYEG       +  RV+VDH+R+ SF IADG 
Sbjct: 244 MALQGKTSNYDTDVFTPLIAKVEQLSQKKYEGLLDNEKDIAIRVVVDHIRAVSFAIADGQ 303

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N G GYV+RRI+RRA+ Y+ R L   E  +  L+  L  +MG+ +PE+ + + L+ E
Sbjct: 304 LPSNTGAGYVIRRILRRAISYSYRFLDMKEVFLYELVAVLKNQMGAFFPEIEKQEKLVTE 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++ E+  F KT++ GLV L+ ++    K  ++ L G   F+LYDT+G P D+ + I   
Sbjct: 364 VIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSRIIAEE 423

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465
           +GL  +D   F++ +E+Q+ R++  S        +K+  W +LK++     F+GYD L  
Sbjct: 424 KGLT-VDEKGFDEEMEKQKQRSKKSS-------AQKVYDWVTLKDE--TESFVGYDQLEH 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
             F+   RK+                            E   G   +VVF+QTPFYAE G
Sbjct: 474 KVFITRYRKL----------------------------ENKDGVFYQVVFNQTPFYAEGG 505

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G    +  + ++ D +K+     ++ ++++      E      +D + RR    
Sbjct: 506 GQVGDKGYIESEEGQFEVLDTKKENN---LNISLIKDLPQAPEKEFTAVVDSRLRRNTQA 562

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  +LG+HV Q GS +  D LRFD +H   ++  E+  +E+ VN  I +
Sbjct: 563 NHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAKIKE 622

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N+ +   R +  ++A+  GA AL G KY D VR++          S  LCGGTH  ST E
Sbjct: 623 NISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFG------SSKELCGGTHAKSTSE 676

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSESS  AGIRRIEAI+ ++A ++    +E++  L+  LK    +V   VE++ 
Sbjct: 677 IGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVEKLL 734

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMSH-------IISEVDSKELKSVMDA 815
           EE +KL     K +L+   ++L+ ++ AD    F+S         ++ +D+  +K ++  
Sbjct: 735 EENQKL-----KSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQ 789

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L+K++ + +I+++  + + K  + + V++DL D +NA  + +  AK + GGGGG  P  A
Sbjct: 790 LKKEVPTSVIVILSDAND-KPMISVGVSDDLGDSYNAGVIVKELAKEIQGGGGGN-PGFA 847

Query: 876 QSGGPN 881
            +GG N
Sbjct: 848 TAGGKN 853


>gi|290961838|ref|YP_003493020.1| alanine tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651364|emb|CBG74486.1| alanine tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 890

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 343/918 (37%), Positives = 515/918 (56%), Gaps = 70/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGEVKPSFDRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+LLT   D     
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQHAWELLTSPQDKGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY +D+EA ++W +  G+  ++I R+   DN+WSM   GPCGPCSEI +D+
Sbjct: 119 LEPEKLWITVYKDDDEAERIWHEQIGVPKERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E  +   +E F     LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKEDFEILGELPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I  + ++TG++Y   +   V+ RV+ DH+R++  LI DG+ 
Sbjct: 238 AMILQGVQNLYEIDTSMAVIDKATEITGVRYGDAHASDVSLRVVTDHIRTAVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLIDVVIGMMGQQYPELVTDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F K L  G  +LD  ++   +   ++L+GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKQAGGQVLSGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+FIGY        
Sbjct: 418 LS-VDEDGFRRLMKEQRDRAKADARAKKTGHADLGAYREIADAAGETEFIGYSD------ 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S++V  I+  G     A  G +VE+V D+TPFYAE GGQ+
Sbjct: 471 ----------------TEGESTVV-GILVDGLSSPAATEGDEVEIVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   +  G  ++I D QK   G++VH  +V+ G +        +ID + R  ++  H
Sbjct: 514 GDTGRIRVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDGRRRTAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLSRDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   I++ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVHAEILSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV------- 760
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V       
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAMLGKL 748

Query: 761 ---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
              E+  E++R  +++ A   L  + +D+S   +        +     + +L+ ++  ++
Sbjct: 749 KDAEKEIEKFRAEKVLQAAAGLAESAKDVSGVAV----VTGQVPDGTTADDLRKLVLDVR 804

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHM 874
            +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGGG+P +
Sbjct: 805 GRIQGGRAAVVALFTAVNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGKPDV 863

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ GG N     +A+  V
Sbjct: 864 AQGGGQNPAAIGEAVDAV 881


>gi|256841698|ref|ZP_05547204.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256736592|gb|EEU49920.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 873

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 340/914 (37%), Positives = 505/914 (55%), Gaps = 70/914 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV+        D D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +      +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI +FN+A+++Q+ RAR ++  + +G     W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEAFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                        C+   +          + I Q+ +++         ++V DQTPFYAE
Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759
           G I  L+++ ESSI AG+RRIEA+T + A   +  Q +   +L++L + +      +   
Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +EE  E  ++++    ++ ++L  E ++    ++   +   + + ++  +K+V   ++ +
Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                + + GI  + K ++++++++DL+    +A  + + +AK +  GGGGG+PH A +G
Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852

Query: 879 GPNGNKADQAIAGV 892
           G N      A+  V
Sbjct: 853 GKNMEGLSIAVGAV 866


>gi|282856374|ref|ZP_06265653.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282585745|gb|EFB91034.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 882

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 342/898 (38%), Positives = 505/898 (56%), Gaps = 56/898 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F+ F++  G     S SL+P +DP+L+FT +GMVPFK  + G E+P Y    T QK
Sbjct: 9   IRQLFVSFWESKGCHHYKSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPEYARAVTSQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVGRT RHHTFFEMLGNFS+GGYFK  ++   W+ LT+   LD  R+Y
Sbjct: 68  CVRT----NDIENVGRTARHHTFFEMLGNFSWGGYFKRESLTWGWEFLTQVLGLDGSRMY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183
            T+Y +D EAF +W K  G+    ++    ++NFW M   GPCGP SEI +DQG+   C 
Sbjct: 124 ATIYKDDREAFDIWTKEIGMPESHLVLNGEDENFWFMGPQGPCGPDSEILYDQGKEFSCG 183

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   PG   + +R++EIWN VF Q+++Q       LP+ +IDTGMGLER+A+++Q   N+
Sbjct: 184 PDCHPGC--DCDRFLEIWNHVFTQYDRQADGSFKPLPRKNIDTGMGLERLASLIQGVRND 241

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ DLF  L++ +  + G++Y  N+  +   +VI DH+R+  F+IADGILPAN+G+GYVL
Sbjct: 242 FETDLFAPLMKKAGDIAGVRYGENDQSDLALKVISDHVRAVCFMIADGILPANDGQGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA  Y RL+G   P +  ++PA+   MG  Y EL + +L IE+ +  E+  FGKT
Sbjct: 302 RRLIRRAARYGRLIGIDRPFINDVIPAVIELMGDPYAELGENRLTIEKIVEIEENGFGKT 361

Query: 362 LDRGLVLLDG----VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           + +G  LLD      L   GK   L G VAF+LYDT G PL++ ++I CA     +D   
Sbjct: 362 IRQGSELLDAEVKAALESAGK--TLGGAVAFQLYDTFGFPLELTREI-CAEHGVSVDEEG 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +  QR RAR+ S  + +   +  ++ +L  ++GAT F+GY+            K  
Sbjct: 419 FKTEMARQRKRARSSSKQIANNVIKGNVFNALANEFGATDFVGYE------------KSE 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           C           ++ ++A+V+ G  V+    G++  V+ + +PFYAE GGQ+GDTG    
Sbjct: 467 C-----------NTKIRALVRDGRKVDALDEGEEGMVLLESSPFYAERGGQIGDTGLIKA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+   + D       + +    V +G LR    ++  ID      ++ NH+ATH+LH  
Sbjct: 516 DGVLAVVKDSTHPFGELNMQTVTVTKGALRVGQGVLAQIDMDRHLAIARNHTATHILHAV 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV QNGS ++   LRFD TH +     +L+ IE   N  I  + PV T + + 
Sbjct: 576 LGKVLGGHVRQNGSLVSDRFLRFDYTHYEAPRREQLEEIETLTNAAILTDRPVTTVVTDL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A ASGA AL   KY   VRVVSV     G  SS LCGGTHV S+G I  L IV E SI
Sbjct: 636 EAAKASGAKALFEEKYGQTVRVVSV-----GDFSSELCGGTHVPSSGTIGSLKIVGEESI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +GIRRI A+TG      L         L++ L V +  ++ +V+ + EE + L  Q+  
Sbjct: 691 GSGIRRITAVTGMTTVRLLQELSRTADELSTRLAVKRPLLIEKVKGMEEEIKALKRQIDE 750

Query: 775 AKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGI 830
             R +L  +++ L   K      ++  I  VD ++   L+   D  +      + ++   
Sbjct: 751 MSRAELAGSIDGLIAKKTLAGGAVNLYIGRVDGQDMDLLRESGDKFKDGDPKAVFVIFSK 810

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + E K  +L ++ E+    + +A  + +  A ++ GG GGGRP+MAQ+GG    K D+
Sbjct: 811 AAEDKVQILCMLGEEAQKKKLHAGRIVKELAALV-GGSGGGRPNMAQAGGREPGKIDE 867


>gi|325104121|ref|YP_004273775.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324972969|gb|ADY51953.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 880

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 332/920 (36%), Positives = 510/920 (55%), Gaps = 76/920 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF   GH+++PS+ ++  NDPTLMFTN+GM  FK++F G+    Y  V   Q+
Sbjct: 8   IRQAFLDFFASKGHQIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRVADTQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT    LD+ RLY
Sbjct: 68  CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTDVLKLDKDRLY 127

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF- 177
           +TV++ DE        +A+  WK    +   +I++    DNFW M +TGPCGPCSEI F 
Sbjct: 128 VTVFEGDEKEGLPMDQDAYDFWKAF--VPESRILKGNKKDNFWEMGDTGPCGPCSEIHFD 185

Query: 178 ---DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
              D+      G    + +  + IEIWN VFM+F +        LP   +DTGMG ER+ 
Sbjct: 186 NRSDEERAKVDGATLVNADDPQVIEIWNNVFMEFNRLKDGSLKKLPAQHVDTGMGFERLV 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFL 285
            V+Q KT+NYD D+F  +I    +  G+ Y              V  RV+ DH+R+ +F 
Sbjct: 246 RVIQGKTSNYDSDVFTPIIDFISKSAGIPYNAAATPDDKDWGQAVAMRVMADHIRAIAFA 305

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N   GYV+RRI+RRA+ YA + LG+ EP +  L+P L  +    + ELI  +
Sbjct: 306 IADGQLPSNNKAGYVIRRILRRAVRYAYQYLGFKEPFLNKLVPLLAAQFKGVFDELISQQ 365

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             +++ +  E+  F +TL+ G+   +  +    +D  ++G  AF+LYDT+G P+D+ + +
Sbjct: 366 DFVQKVILEEENSFLRTLENGINRFEKYIQD-NQDRQIDGAFAFELYDTYGFPIDLTELM 424

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +GL  +D+  F+  L++Q+ R+RA +  + +G     W ++ E     +F+GYD + 
Sbjct: 425 AREKGLT-VDMAGFDTELQKQKERSRA-ATAIDAGD----WITVNED-DEVEFVGYDEVV 477

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  + + RKV                            +A   ++ ++V D TPFYAE+
Sbjct: 478 ATSRILKYRKV----------------------------KAKGKEQYQLVLDVTPFYAES 509

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD+G    +   + I D  KK  G+ +H A V    L    + +  ++   RR   
Sbjct: 510 GGQVGDSGVLENENESIIINDT-KKENGLIIHFADVLPHNLNA--TFIAKVNVHTRRLTE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS +  D LRFD +H   +T  E+  IE  VN  + 
Sbjct: 567 NNHSATHLLHAALKAVLGDHVNQKGSLVNADVLRFDFSHFSKVTEQEIAKIEAIVNQKVR 626

Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+   R +  + A+ SG  AL G KY D VRV++  ++D   +S  LCGGTHV +TG
Sbjct: 627 ENIPLKEERNVPYQKALESGVTALFGEKYGDYVRVIT--FDDS--YSKELCGGTHVKATG 682

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    IVSES++ AG+RRIEAIT  +A  ++  Q + L  L   LK +  ++   VE +
Sbjct: 683 QIGYFKIVSESAVAAGVRRIEAITADKAEEYINNQAQLLAVLKELLK-NPKDLTKSVESL 741

Query: 764 WEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKELKSVMD-ALQ-KK 819
            EE  KL+    K  L+    ++D+   K+  VN ++ I  E+D    +++ + A Q K 
Sbjct: 742 LEENNKLKKEIEKSVLEKASVLKDVLKSKVTVVNDVNLIAEEIDLSNAEAIKNLAYQLKD 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           I   + +++G + + K ++ ++++++L+     +A  + R  AK +  GGGGG+P  A +
Sbjct: 802 IVDNLFLVLGANIDGKPNLTVMISDNLVKEKGLDAGKIIRELAKEI-NGGGGGQPFYATA 860

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N      A+     +LK
Sbjct: 861 GGKNPEGLKSALEKAIIYLK 880


>gi|78778430|ref|YP_396542.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|123554842|sp|Q31DD9|SYA_PROM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78711929|gb|ABB49106.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 886

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 333/917 (36%), Positives = 525/917 (57%), Gaps = 78/917 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P  +A T+ Q
Sbjct: 15  IRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L    +
Sbjct: 73  KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSVENI 128

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ EDEE+ K+W+   G+  D+I+++   DNFWS  +TGPCGPCSE+++D       
Sbjct: 129 IVSVFHEDEESAKIWRDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHP--EK 186

Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           GL     E+G+R+IE +NLVFMQ+ + +  +   L   +IDTGMGLERMA +LQEK NNY
Sbjct: 187 GLQNIDLEDGDRFIEFYNLVFMQYNRDSNGKLTDLKFKNIDTGMGLERMAQILQEKQNNY 246

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQ   ++  + Y   +  N ++ ++I DH R+   LI+DG+  +N GRGY+L
Sbjct: 247 ETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGYIL 306

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF +T
Sbjct: 307 RRLIRRMVRHGRLLGITNEFLPHIATVGINLMQNNYPDLKNNNDLILNEIKIEEIRFRET 366

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LLD ++S   K  +++G  AF+LYDT+G PL++  +I     ++ +D+  F + 
Sbjct: 367 LERGEKLLDELISSGQK--LISGFKAFELYDTYGFPLELTVEIAEENSIS-VDVKGFEEE 423

Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +  Q+ RA+A S  +     G+ E+      + +  T F GYDLL               
Sbjct: 424 MNAQKERAKAASSNIDLTLEGSLEREI----DLFNKTVFNGYDLLLS------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + +K I     +V++A  GQKV +V DQT FY E+GGQ+GD G      
Sbjct: 467 ----------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + + +V +K + +F+H+  +++GIL     +   +   NR + + NH+ATHLL  AL 
Sbjct: 517 LEVLVDNVMRK-KNVFLHYGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +++   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +
Sbjct: 576 SVVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA A+ G KY+D VRVV+V     GV S  LCGGTHV +T E+    I+SE  I A
Sbjct: 636 ALEKGAVAMFGEKYDDEVRVVNVP----GV-SMELCGGTHVKTTSELGSFKIISEEGISA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E     LI+  ++
Sbjct: 691 GVRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAE-----LINKNKE 745

Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA---LQKKI-QSGIIML 827
           +Q   ++++  K +        VN  S +++++D  +  S+  A   L   +    I++L
Sbjct: 746 IQKMKDEIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVIL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881
            GI   +   +L VV+  L D  + V +   + K++        GGGGG+P+ AQ+G  +
Sbjct: 806 GGIPNPENRKLLFVVS--LGD--DPVKIGLHAGKIINEIARICSGGGGGKPNFAQAGAKD 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K   A+    ++L+K
Sbjct: 862 IDKLSDALDYAKNYLQK 878


>gi|268317116|ref|YP_003290835.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262334650|gb|ACY48447.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 953

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 352/983 (35%), Positives = 531/983 (54%), Gaps = 129/983 (13%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
             IR +FL+FF++ GHE++PS+ L+P NDPTL+FTN+GM  FK++F G     Y+     
Sbjct: 8   EQIRQSFLDFFREKGHEIVPSAPLVPQNDPTLLFTNAGMNQFKDVFLGIGTRPYKRAANT 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + LD  R
Sbjct: 68  QKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKREAIRWAWELLVERWGLDPDR 127

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY TV++ DE        EA +LWK  + +    I    T DNFW M +TGPCGPCSEI 
Sbjct: 128 LYATVHEGDEALGLEPDVEAAELWKSETSIDPSHIKFCPTKDNFWMMGDTGPCGPCSEIH 187

Query: 177 FD-----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            D     +   +P G+   +    R IEIWNLVF+Q+          L    +DTGMGLE
Sbjct: 188 IDLRPDEERRRVP-GIELVNAGDPRVIEIWNLVFIQYNALPDGRLEPLKAKHVDTGMGLE 246

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNIVNH----------RVIVD 277
           R+  VLQ KT+NYD DLF  ++Q + +++       Y+   + +           RV+ D
Sbjct: 247 RIVAVLQGKTSNYDTDLFAPILQRAAELSPRDEVRGYDDIRVADERERERIRVALRVVAD 306

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG++P N GRGYV+RRI+RRA+ Y  + LG+ EP +  L+  L  +MG  
Sbjct: 307 HIRAIAFAIADGVVPGNTGRGYVIRRILRRAVRYGYQTLGFREPFLYRLVEPLAHKMGRV 366

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-------------------- 376
           +PE+ + +  +E  +++E+E F  TL  GL   + +L +L                    
Sbjct: 367 FPEIERHRAYVERVIKAEEESFLATLGTGLAFFERLLPYLKAAAEGRPIEAIRADLLRDG 426

Query: 377 --------------------------GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
                                       ++ + G+VAF L+DT+G P+D+ Q +    GL
Sbjct: 427 QALDLLQKAYVDTSDREAIVEAFLKSAAEKNVPGEVAFLLHDTYGFPIDLTQLMAREEGL 486

Query: 411 AGIDIISFNQALEEQRSRARAHSLG----LGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            G+D+  + + +E QR RARA S      L +   E  W  + E   +  F+GYD  R  
Sbjct: 487 -GVDMARYEELMERQRERARAASTFGAAVLTADEEEAGWKRVSEGEDSV-FVGYDTTR-- 542

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
               ED ++            V +I            +   G + E+V DQTPFYAE+GG
Sbjct: 543 ---VEDARI----------RAVRTI------------QTPEGPRHELVLDQTPFYAESGG 577

Query: 527 QLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GDTG   +GD   +++ D QK   G  VH+  V+R     +  +   +D   R+++  
Sbjct: 578 QVGDTGVLRVGDE-EIRVLDTQKLG-GHIVHY--VDRLPKELDAPVEAIVDAARRKRIEK 633

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHLLH AL  ILG+HV Q GS + PD LRFD +H + +T   L+ IE  VN++I +
Sbjct: 634 HHTATHLLHAALREILGTHVQQKGSLVAPDRLRFDFSHFERVTPELLRQIEARVNEVIQR 693

Query: 646 NLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N+P +  R +  E+AIA GA AL G KY DRVRV++ +       S  LCGGTHV++TGE
Sbjct: 694 NVPRIEERDVPYEEAIARGAMALFGEKYGDRVRVITFDPN----FSMELCGGTHVAATGE 749

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + +  I+SE S+ +GIRR+EA+ GQ A   +  Q  +L+   +  K  Q  +   +  + 
Sbjct: 750 LGVFRIISEGSVASGIRRVEALAGQDALDWINRQLTELEQARTQFKSLQRPLDEEIAVLL 809

Query: 765 EEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R+L+     L   ++K +L       H++  +  ++  +  +   EL+ +  AL+ +
Sbjct: 810 EEQRRLEKELAALRREQQKARLAKLIEQAHRVNGLRVVTGQLEALSMDELRELAQALRDQ 869

Query: 820 IQSGIIMLVGISKEKKASVLI--VVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMA 875
           +    + ++G +  +K  V +   VT+D++ R   ++  RL  +V  + GGGGGGRP +A
Sbjct: 870 LGREGVAVLGTTDPEKQKVYLAAAVTDDVVAR--GLEAGRLVGQVARIVGGGGGGRPTLA 927

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
            +GG    K  +A+  V   +++
Sbjct: 928 TAGGRQPEKLHEALEAVPRLVQQ 950


>gi|257869401|ref|ZP_05649054.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803565|gb|EEV32387.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 880

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 354/925 (38%), Positives = 533/925 (57%), Gaps = 77/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++SS  +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKHLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGTVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W++  GL+ + I+ I   DNFW +   GPCGP SEIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWREEIGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173

Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+G       E  P   PG   E ERY+EIWNLVF +F  Q       LP  +IDTGMG
Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQADGTYEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LERM +++Q    N++ DLF  +I+A ++++G    G +    ++ +VI DH+R+ SF I
Sbjct: 232 LERMVSIIQNAPTNFETDLFMPIIEAVQELSGNFAYGESKATDISFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE++  +  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDSAFLYKLVPIVGKIMESYYPEVLAQQAF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V++ +  D  E L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRNEEERFHETINEGLEILNQVIAKVKADGQETLAGADIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR+RAR+     L  G    +   +K +   ++F+GY+ L
Sbjct: 412 AQDEGLK-VDHAGFEKEMDAQRARARSARSTELSMGVQSALLTDIKVE---SRFVGYESL 467

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                    +S +  I+Q+ ++++   +G+  +++F +TPFYAE
Sbjct: 468 EA-----------------------NSELLVIIQEEQLLDTVTTGE-AKLIFKETPFYAE 503

Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG  +     I  +ITDV+K   G F+H A V  G L    S  L +D   R 
Sbjct: 504 MGGQVADTGTVVDQSGVIVAEITDVKKAPNGQFLHTAKV-TGNLTEGASYFLQVDQHRRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +T+ EL  +E  VN 
Sbjct: 563 KIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTADELSQMEQIVNQ 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + LPVVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++
Sbjct: 623 KIWEALPVVTIETDIDTAKGMGAMALFGEKYGQDVRVVNV-----ADWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  IVSES I AG+RRIEA+T Q A + L   + +LK++A  +K +Q  +VV + 
Sbjct: 678 TEDIGIFKIVSESGIGAGVRRIEAVTSQEAYALLHEGEAQLKAIAGIVKSAQIKDVVSKT 737

Query: 761 E-------EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           E       ++ +E + L    A ++     +D+   ++  + F++  ++  D  +L+ + 
Sbjct: 738 EQLQQQLRDLQKENQALASKLANQQAGDVFKDVK--EVNGIRFIAAKVTVKDMNQLRQLA 795

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871
           D  ++K  S +++L   + + K ++L  +T    ++   A DL + ++ KV   GGGGGR
Sbjct: 796 DQWKQKELSDVLVL-ATANDGKVNLLAAMTPQANEKGLKAGDLIKHIAPKVG--GGGGGR 852

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MAQ+GG      D A+  VA++L
Sbjct: 853 PDMAQAGGKQPEGIDAALTEVANWL 877


>gi|282866222|ref|ZP_06275269.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282559006|gb|EFB64561.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 889

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 354/923 (38%), Positives = 515/923 (55%), Gaps = 80/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+ LT       F 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQFAWEALTNSVEDGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA ++W++  G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + K +  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKDDFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + ++  + ++TG++Y  E  + V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGAEHGSDVSLRVVADHIRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPEL+  +  +E   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGQVVKDLVDVVIDTMGQQYPELVTDRKRVETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F K L  G  +LD  +S       ++L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKALKGGTNILDTAVSETKATGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+F GY        
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADNSGLTEFTGYTS------ 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S+IV  +V  G     A  G +VEVV D+TPFYAE GGQL
Sbjct: 471 ----------------TQGESTIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G   +  G  +Q+ DVQ+   G+ VH   V+ G +    S++  ID   RR ++  H
Sbjct: 514 ADQGRIRLDTGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGSSVLAAIDTTRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++A+ L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLAREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLK-------GRPEELPEKI 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSV 812
                      ++++   A++ LQ     +   K  DV  ++ +  +V     + +L+ +
Sbjct: 742 SGMLGKLKDAEKEIEKFRAEKVLQAAAGLVESAK--DVRGVALVTGQVPDGTSADDLRKL 799

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +  ++ ++Q G   +V +        L V+  +   R     A DL R +AK L GGGGG
Sbjct: 800 VLDVRGRVQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+P +AQ GG N +    A+A V
Sbjct: 859 GKPDVAQGGGQNPDAIGDAVAAV 881


>gi|262384031|ref|ZP_06077167.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262294929|gb|EEY82861.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 873

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 340/914 (37%), Positives = 504/914 (55%), Gaps = 70/914 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV+        D D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +      +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR ++  + +G     W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                        C+   +          + I Q+ +++         ++V DQTPFYAE
Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVAKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759
           G I  L+++ ESSI AG+RRIEA+T + A   +  Q +   +L++L + +      +   
Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +EE  E  ++++    ++ ++L  E ++    ++   +   + + ++  +K+V   ++ +
Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                + + GI  + K ++++++++DL+    +A  + + +AK +  GGGGG+PH A +G
Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852

Query: 879 GPNGNKADQAIAGV 892
           G N      A+  V
Sbjct: 853 GKNMEGLSIAVGAV 866


>gi|331269730|ref|YP_004396222.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329126280|gb|AEB76225.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 879

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 343/909 (37%), Positives = 524/909 (57%), Gaps = 54/909 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+  T+   + + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181
           +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D GE
Sbjct: 122 KLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                      + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q   
Sbjct: 181 IKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNKLEFPNIDTGMGLERMATIMQGVE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +++D  K ++     +    Y  +++  ++ R+I DH+RS S +I+D +LP+NEGRGY
Sbjct: 241 TIFEVDTIKSILDKVANLANTSYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  ++ ++    G AYPEL + K  I++ +  E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGIQGTFLHKIVDSVVENSGDAYPELKEKKDYIKKVISIEEERFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L   +  L K+  +IL+G+  FKLYDT+G PL++ ++IL  + +  +D+  
Sbjct: 361 ETIDSGMEILKEYIEELEKENKKILSGEKVFKLYDTYGFPLELTEEILEEKNMT-VDMDG 419

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           FN+ ++ QR RARA  S     GT  K+  ++  +   T+F GY+ L             
Sbjct: 420 FNKEMKVQRERARAARSESTYMGTDVKVIDTIPSEI-ETKFDGYNNLE------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      + S +K I++  +  +    G+K  +V D+TPFYAE GGQ+GD G    
Sbjct: 467 -----------LQSQIKVIIKNDDFADCIKKGEKGIIVTDKTPFYAEMGGQIGDKGTISA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG   ++ + +K   G  +H   V  G +     ++L +D + R  +S NHS THLLH A
Sbjct: 516 DGFVAKVENCKKNIGGKIIHFVEVVEGSINLGNEVLLEVDKRRRDNVSKNHSTTHLLHAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q+GS +  D LRFD TH + +T  EL  +ED VND+I++   V T  M  
Sbjct: 576 LRKVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNDVISKVYEVETNEMTI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  SGA AL   KY D+VRVV +     G  S  LCGGTH+S+ G+I L  IVSES I
Sbjct: 636 EEARQSGAMALFDEKYGDKVRVVKM-----GNFSVELCGGTHISNIGKIGLFKIVSESGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQL 772
            AGIRRIEA+TG +A   +  +   L+ +A  LK S+ ++V R+     E+ E+ +++  
Sbjct: 691 AAGIRRIEAVTGTKALEFMKDKSNLLREVAEMLKCSEKDIVNRLNQQNLELKEKEKEIAA 750

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVG 829
           +  K KL    ED   + I ++  +   ++   +VD + L+++ D ++ K+ SG+++L G
Sbjct: 751 L--KSKLASGSEDEILNNIKEIKGIKLAVADLKDVDGEALRNLGDKIKNKLGSGVVVL-G 807

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              E K   + + ++D++ +  +   + R  AK+  GGGGGGRP MAQ+GG    K   A
Sbjct: 808 SEVEGKVQFIAMASKDVVSKGVHCGTIVREIAKI-AGGGGGGRPDMAQAGGRLPEKLKDA 866

Query: 889 IAGVASFLK 897
           +  V + ++
Sbjct: 867 MNAVENIME 875


>gi|298491784|ref|YP_003721961.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233702|gb|ADI64838.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 880

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 338/899 (37%), Positives = 521/899 (57%), Gaps = 55/899 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+ + GHELLPS+SL+P  DPT++ T +GM+PFK IF GQ  P ++  TT 
Sbjct: 11  NDIRALFLDFYTQRGHELLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPDFKRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W+L T+ F L   R
Sbjct: 70  QKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWELSTQVFRLPPER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V++ED+EAF +W+   G++  +I R+  ++NFW    TGPCGPCSEI +D    + 
Sbjct: 126 LVVSVFEEDDEAFGIWRDKIGVNEKRIKRMGADENFWVSGPTGPCGPCSEIHYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +   +    L   +IDTGMGLERMA +LQ K NNY
Sbjct: 185 GEDNIDLEDDSRFIEFYNLVFMQYNRDASENLTPLQNKNIDTGMGLERMAQILQNKPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + +V  + Y   + +  V+ +VI DH+RS   +IAD I  +N GRGYVL
Sbjct: 245 ETDLIFPIIETAAKVAKIDYHHSDEDTKVSLKVIGDHIRSVVHMIADEIRASNVGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G  E  +  +     +   S YP L Q +  I+  L+ E+  F KT
Sbjct: 305 RRLIRRVVRHGRLIGICEEFINQVAERAISLSESVYPNLRQREASIKAELQREEANFLKT 364

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LDRG  LL  ++  + +  +  ++G  AF LYDT+G PL++ Q++     L  +D+  FN
Sbjct: 365 LDRGEKLLAEIIQEVKQKGLTSMSGKSAFTLYDTYGFPLELTQEVAEENNLT-VDVDGFN 423

Query: 420 QALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
             +++Q  RA+A   ++ L   T +     L E    T+FIGY                 
Sbjct: 424 AEMQKQVERAKAAHETIDL---TVQGSLDKLVEHIHTTEFIGYTA-----------AATT 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
            K  + L  G+S             E A +G++V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 470 AKVEVLLVGGISE------------ETAEAGREVQIVLDRTPFYAESGGQIGDKGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ +++ +V+K+++  FVH   +E G LR   ++   I+   RR+   NH+ATHLL  AL
Sbjct: 518 GVLVRVEEVKKESD-FFVHFGHIESGTLRIGDNVKAQINTAYRRRSQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   +SQ GS ++ D LRFD    + +TS E++ IE+ VN  I++       ++   
Sbjct: 577 KKVVDEGISQAGSLVSFDRLRFDFNCPRALTSEEVQQIEELVNTWISEAHSAKIEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY + VRV+    E  GV S  LCGGTHV++TGEI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGNEVRVI----EFPGV-SMELCGGTHVNNTGEIGVFKIISEAGVS 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA++G     +L  +D+ +  L+  LKV    +  R+  +  E R  +      
Sbjct: 692 SGIRRIEAVSGAAILDYLNVRDKVVNDLSDRLKVKPEEIPDRIRTLQTELRNSEKEIQTL 751

Query: 778 KLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +   + L  +   +A+   +   + +VD++ LK+  + L + I +G ++L  I +
Sbjct: 752 KSQLAIVKSDSLLKTAKTVAEHRIIVAQMEDVDAESLKAAAERLLQTIGNGAVVLASIPE 811

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
             K S++   + ++  +   V+  +    +  +  GGGGG+P++AQ+GG + +K  QA+
Sbjct: 812 AGKVSIVAAFSSEVNKK--GVEAGKFVGAIARICSGGGGGKPNLAQAGGRDASKLPQAL 868


>gi|119487555|ref|ZP_01621165.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119455724|gb|EAW36860.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 891

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 355/910 (39%), Positives = 520/910 (57%), Gaps = 66/910 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL F+ + GH+++PS+SL+P  DPT++ T +GM+PFK IF GQ  P     TT 
Sbjct: 11  SEIRQKFLNFYAERGHKIMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRPPEVPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI   W+L T+ F L   R
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTQAIAWGWELSTEVFGLPPER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+++D+EAF++W+   G+ A +I R+  +DNFW    TGPCGPCSEI++D    + 
Sbjct: 126 LVVSVFEDDDEAFEIWRDEIGIPAHRIQRMGEDDNFWKSGPTGPCGPCSEIYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   NNY
Sbjct: 185 GDDKIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQSVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ +  + G+ Y+ ++    V+ +VI DH+R+   LI DG+  +N GRGY+L
Sbjct: 245 ETDLIFPIIKTAADIAGIDYKKSDKKTQVSLKVIGDHVRAVVHLITDGVTASNIGRGYIL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G        +           YP+  + + +I+  L+ E+ERF +T
Sbjct: 305 RRLIRRVVRHGRLIGIEGEFTTKVAETAIRLSEEVYPQTRERETVIKAELQREEERFLET 364

Query: 362 LDRGLVLLDGVLSHLGKDEI------------LNGDVAFKLYDTHGLPLDIMQDILCARG 409
           L+RG  LL  ++      EI            ++G  AF LYDT+G PL++ Q+I    G
Sbjct: 365 LERGEKLLTDIIEKAISKEIPPQSPLSKGGGMISGKDAFVLYDTYGFPLELTQEIAEESG 424

Query: 410 LAGIDIISFNQALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           L  +D+  F   +EEQR+R++ AH ++ L   T +     L E    T F+GY     S+
Sbjct: 425 LT-VDVSGFEVEMEEQRNRSKDAHETIDL---TVQGSLDKLAENIHPTAFLGY-----SE 475

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            + E                  ++VK I+ +G+ VE A +G KV++V DQTPFYAE+GGQ
Sbjct: 476 LVSE------------------AVVKVILIEGKSVESAEAGTKVQIVLDQTPFYAESGGQ 517

Query: 528 LGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           +GD G  + GD + +++ DVQK++  IF+H   VERGIL   M++   ID   RR+   N
Sbjct: 518 IGDRGFLSFGDTV-VRVKDVQKES-NIFIHLGKVERGILTVGMTVNAQIDRACRRRAQAN 575

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  I+   +SQ GS ++ + LRFD    + +T  E++ +ED VN  IA+ 
Sbjct: 576 HTATHLLQSALKLIVDPTISQAGSLVSFERLRFDFNCPRSLTPEEVQQVEDQVNSWIAEA 635

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P +   M  EDA   GA A+ G KY+D VRVV       GV S  LCGGTHV++T EI 
Sbjct: 636 HPAIVAEMPLEDAKNKGATAMFGEKYSDVVRVVDY----AGV-SMELCGGTHVNNTAEIG 690

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSE+ I +GIRRIEA+ GQ    +L  +D  +K L    K     +  R+  +  E
Sbjct: 691 LFKIVSETGISSGIRRIEAVAGQSVLDYLKVRDNVVKELGDRFKAKPEELPERITNLQNE 750

Query: 767 YR--KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  + QL  AK +L +   D        I D+  +   +  VD+  LK   + LQ+K+ 
Sbjct: 751 LKATQKQLEAAKGELAIAKSDQLLAEAETIGDIKILVAELPGVDADSLKKAAERLQQKLG 810

Query: 822 SGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
              ++L    +E K S++   +  +    +  A       AK+  GGGGGGRP+ AQ+GG
Sbjct: 811 ESAVVLGSSPEEGKVSLVAAFSAKVHKEKKLQAGKFIGNIAKIC-GGGGGGRPNFAQAGG 869

Query: 880 PNGNKADQAI 889
            + +K  +A+
Sbjct: 870 RDASKLSEAL 879


>gi|218437893|ref|YP_002376222.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218170621|gb|ACK69354.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 881

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 350/901 (38%), Positives = 526/901 (58%), Gaps = 58/901 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ FL+FF KN H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+KP Y   TT 
Sbjct: 11  SEIRSYFLDFFAKNQHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQKPDYPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L   +
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFKLPPDQ 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V++ED+EAF++W+    +   +I R+   DNFW    TGPCGPCSE+++D    + 
Sbjct: 126 IVVSVFEEDDEAFEIWRDKINIPPQRIKRMGKKDNFWQAGPTGPCGPCSELYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ Q  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GDKTIDLEDDSRFIEFYNLVFMQYNQDAEGNLTPLQNKNIDTGMGLERMAQILQKVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQA+  +  ++Y   +    V+ +VI DH+R+   +IADGI  +N GRGYVL
Sbjct: 245 ETDLIFPIIQAAADIAKIEYKKADEKTKVSLKVIGDHVRAVVHMIADGITASNTGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +         +AYP + Q +  I+  L  E+  F  T
Sbjct: 305 RRLIRRVVRHGRLIGIEGAFINQVAEVAIALSETAYPNVRQRETPIKGELDREEAAFLTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L+RG  LL  +++ + K +   ++G  AFKLYDT+G PL++ Q+I    GL  +++  F+
Sbjct: 365 LERGEKLLSEIIAKVKKSKKKQISGVDAFKLYDTYGFPLELTQEIAEEEGLT-VNVEEFD 423

Query: 420 QALEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           + +++Q+ +++A   ++ L   G+ +K    L E    T+F+GY                
Sbjct: 424 EEMKKQQDQSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGY---------------- 463

Query: 477 CQKPPIDLTNGVS-SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                   T+  S + V+ ++  G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G   
Sbjct: 464 --------TDAQSVAHVEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYLT 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+ + +++ DVQK++   FVH   VERG +    S+  TID   RR++  +H+ATHLL  
Sbjct: 516 GETLVVRVEDVQKES-AFFVHFGRVERGTITVGDSVTATIDRACRRRVQAHHTATHLLQA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+   VSQ GS +T D LRFD    +P+T  EL+ IED +N+ IA+       IM 
Sbjct: 575 ALKKIVDDSVSQAGSLVTFDRLRFDFNCPRPVTPEELQQIEDLINNWIAEAHEAHVSIMA 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A A GA A+ G KY   VRV+ V     GV S  LCGGTHV +T EI L  I+SES 
Sbjct: 635 LEEAKAKGAVAMFGEKYGAEVRVLDVP----GV-SMELCGGTHVRNTAEIGLFKIMSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773
           + AGIRRIEA+ G     +L  ++  +K L    KV    +  R+  +  E +  + Q+ 
Sbjct: 690 VAAGIRRIEAVAGPAVLEYLNEREAVVKDLCDRFKVKPHEISDRITALQSELKSTQKQME 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             +++L +   D    +   + D   +   I  VD   L +  + LQ+K+    ++L  I
Sbjct: 750 SLQQELAIAKSDQLLSNAESVGDFKVLVAEIEGVDPNGLMTAAERLQQKLGESAVILGSI 809

Query: 831 SKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E K S++   +  ++   +  A       AK+  GGGGGGRP++AQ+GG + +K  +A
Sbjct: 810 PSEGKVSLVAAFSPKVIKEKKLQAGKFIGEIAKIC-GGGGGGRPNLAQAGGRDSSKLKEA 868

Query: 889 I 889
           +
Sbjct: 869 L 869


>gi|297564703|ref|YP_003683675.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849152|gb|ADH62167.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 894

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/877 (38%), Positives = 499/877 (56%), Gaps = 71/877 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60
             + IR  +L+FFQ  GH  LPS S+IP +DP+L+F N+GM P K  F G+  P++    
Sbjct: 4   TTAEIREKYLQFFQSKGHLRLPSFSVIPQDDPSLLFINAGMTPLKPYFLGK-TPIFHTPE 62

Query: 61  -------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
                  VTT QKCVR G    D++NVGRTNRH T FEMLGNFSFG YFK+ AI  AW+ 
Sbjct: 63  GEKISYRVTTCQKCVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAILWAWEF 118

Query: 114 LT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAET 166
           LT  +   L+  R+Y+T+Y+ED+EAF+ W +  GL  +++ R   ++NFW     S    
Sbjct: 119 LTDKRWLGLEPERIYVTIYEEDDEAFEYWTQDVGLPPERLHRFGADENFWPADAPSKGPN 178

Query: 167 GPCGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           GPCGPCSEI++D+G             + E  R++EIWNLVF Q+++++      LPK +
Sbjct: 179 GPCGPCSEIYYDRGPEFGADTWADYYQTRESNRFVEIWNLVFPQYDRKDGGILEPLPKPN 238

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGL R+A VLQ  T+ Y+ D FK +I    +++G+ YEG + + HRVI +H R+ S
Sbjct: 239 IDTGMGLARVAMVLQGVTDFYETDEFKPIIAKVVELSGVSYEGPSSLAHRVISEHARAVS 298

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F+++DG   +N GRGYV+RR++RRA+ Y  LLG  EP M  L   +   MG  YPEL + 
Sbjct: 299 FILSDGATFSNTGRGYVVRRLLRRAVRYGYLLGLREPFMHRLAAVVAEVMGGVYPELREN 358

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              +++ +R E+ERF +TL++G+  LD +LS L   + L+G+ AF+LYDT+G PLD+  +
Sbjct: 359 LESVQKQIRLEEERFFETLEQGVERLDALLSGLEPGDTLSGEEAFRLYDTYGFPLDLTLE 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR---AHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
           I   RG+  +D   F +ALEE +  AR   A    +     E +  ++    G T F+GY
Sbjct: 419 IADERGIK-VDTEGFQKALEEAQELARQRAAFDKDVFKRPNEAL-LAIARDSGGTVFVGY 476

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +                           ++ VK ++   + ++EA +G +V+VV D+TPF
Sbjct: 477 E-----------------------RTEETAQVKLLLAGNQSLDEAPAGTEVQVVLDRTPF 513

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+GD G     G   +++  QK  +GI++H A VE G L+   ++   +D  +R
Sbjct: 514 YAEGGGQIGDFGVLEWAGGWAKVSTTQKNPDGIYLHLAKVEEGTLKAGTTVRALVD-PHR 572

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R    NH+ATHLLH AL  ILG+HV Q GS + PD LRFD TH +P++  EL  IE  VN
Sbjct: 573 RDTEKNHTATHLLHAALRAILGTHVRQAGSYVGPDRLRFDFTHPEPVSPRELARIELLVN 632

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCG 695
             I  + PV       E+A   GA AL G KY D VRVV+VE        G   S  LCG
Sbjct: 633 RWIQGDFPVSYTYKPLEEAKKEGAMALFGEKYADVVRVVAVEGTADNVAAGTAISKELCG 692

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV  TGEI +  I  E ++ +G+RRIEA+TG  A  ++    + L++L+  L V+   
Sbjct: 693 GCHVRRTGEIGMFVIRFEEAVSSGVRRIEALTGTGAVQYVRENLDVLQALSRELGVNPEG 752

Query: 756 VVGRVEEIWEEY--RKLQLIHAKRKL---QLNVEDLSCHKIA-DVNFMSHIISEVDSKEL 809
           +  R+ ++  E   R+ ++   +R+L   QL     S  K A    +++  +  ++   L
Sbjct: 753 LPERLGKLQNEIKAREKEIERLRRELARAQLGGGTASALKEAGGYQYLAVRLEGLEVGAL 812

Query: 810 KSVMDALQKK-------IQSGIIMLVGISKEKKASVL 839
           +S  D L  K       + SG  +++ +SKE +A  L
Sbjct: 813 RSAADELLDKHKADLVAVGSGQNLVIKLSKEAQAKGL 849


>gi|256826954|ref|YP_003150913.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
 gi|256583097|gb|ACU94231.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
          Length = 878

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 348/914 (38%), Positives = 504/914 (55%), Gaps = 72/914 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQ 59
             + IR  +L +F+  G + +PSSSLIP +DP+L+ T++GMV FK  F  Q   E P Y 
Sbjct: 2   TTAEIRERYLRYFESKGCKRMPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAP-YI 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVR     ND+D +G   RH +FFEMLGNFSFG YFKE     A D    E  
Sbjct: 60  GTTTAQKCVRT----NDIDLIGTDGRHLSFFEMLGNFSFGAYFKEEMCAWALDFSLNELG 115

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY TVY++D+E  ++WK + G+ A  I ++   DNFW    TGPCGPCSE+++DQ
Sbjct: 116 LPKEKLYFTVYEDDDETIEIWKNL-GIEASHISKMGEEDNFWRAGPTGPCGPCSELYYDQ 174

Query: 180 GECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G  +  G P  +   E +R++E WN VF Q++ Q       LPK +IDTGMGLERMA +L
Sbjct: 175 GPEVGCGRPDCAPGCECDRFLEYWNCVFTQYDAQEDGTLKPLPKKNIDTGMGLERMAAIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q  ++N+D D+ + L+   E+++G  Y  ++  +   RV+ DH RS +F+IADGILP+NE
Sbjct: 235 QSVSSNFDTDVLRGLVAVGERLSGRSYGASDADDRALRVMADHSRSMTFMIADGILPSNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG     +   +  +   MGS Y EL++ + LI+  + SE+
Sbjct: 295 GRGYVLRRLLRRAVMKGHLLGIEGAFLGSFVDEIIQVMGSEYAELVENRDLIKRVVASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG TL +G   L   L  L    +L+G+VAF L+DT+G PL++ Q+I CA     +D+
Sbjct: 355 ERFGSTLRQGRAYLQEALDGLSGG-LLSGEVAFTLHDTYGFPLEVTQEI-CAESGIEVDV 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIW-------FSLKEKYGATQFIGYDLLRGSKF 468
             FN  ++EQRSRAR  +        E  W        +L E+ GAT F GYD       
Sbjct: 413 EQFNHLMDEQRSRARRAT----QDDAEAAWSTYDGSMAALLEQVGATVFTGYD------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            N  +  V+A+++ GE V    +G+   VV D++PFYAE GGQ+
Sbjct: 462 ----------------ENKSAGHVRALLRDGESVCTLSAGEAGCVVLDRSPFYAEMGGQV 505

Query: 529 GDTGCAIG-DGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            DTG     DG    ++TDV+    G+ VH+  VE+G    +  ++ +ID   R ++  N
Sbjct: 506 ADTGTITSPDGASCARVTDVKAPESGLIVHYVQVEQGSFTIDDEVIGSIDVARRERIRRN 565

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATH+LH  LS +LG+HV Q GS + P+ LRFD TH + I  A L  IE+  N +I + 
Sbjct: 566 HTATHILHKVLSEVLGNHVKQAGSYVAPNRLRFDFTHFEAIDRATLDEIENVANRVIMEA 625

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            PV T     ++A   G  AL G KY + VRVV +   DG   S  LCGGTHV +T EI 
Sbjct: 626 HPVHTYETTLDEAREQGVTALFGEKYGEVVRVVDI---DG--FSRELCGGTHVRNTSEIG 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + IVSE S  A +RRIEA+T   A ++     ++L+  A+   V   +V  R     E+
Sbjct: 681 FVKIVSEQSTGANMRRIEAVTSFDALAYTDRMRDELRQTAAVFGVPLFDVNERAAIATEQ 740

Query: 767 YRKLQLIHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            + LQ   AKR  ++ V         + +S  + A    + + +  +D+  L++  D  +
Sbjct: 741 LKTLQ-AQAKRAKKIAVASDIRTLVDKAISTSR-AGYPVLIYRLDGMDAGSLRNTWDIAR 798

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG--GGGGGRPHMA 875
             +  G    V ++ + +   LI+            D   +  +V G   GGGGG+P MA
Sbjct: 799 AHL--GETCAVVLASDNEGKPLIMAAGTDAAVAAGFDAGAIIKEVAGAISGGGGGKPSMA 856

Query: 876 QSGGPNGNKADQAI 889
           Q+GG +    D+A+
Sbjct: 857 QAGGKDPAGLDEAL 870


>gi|194017184|ref|ZP_03055796.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194011052|gb|EDW20622.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 878

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 346/912 (37%), Positives = 514/912 (56%), Gaps = 62/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P +DPTL++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPENPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT +     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDEWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA+ LW+   G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 NLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 180 YGDDMNDPELYPGG--ENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A E ++G  Y          +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YP++   +  I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKVIKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +ERF +TL+ GL +L  V+      G  +I   DV FKLYDT+G P+++ ++      + 
Sbjct: 358 EERFHETLNEGLAILSEVIKKERDKGSTQISGEDV-FKLYDTYGFPVELTEEYAEDENMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RAR     +GS   +    +L +    + F+GY+ L     + E
Sbjct: 417 -VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENLTADAHIVE 473

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                                  ++Q GEIV EA  G  V+++ D+TPFYAE+GGQ+ D 
Sbjct: 474 -----------------------LLQNGEIVTEAHEGDTVQILLDETPFYAESGGQVADK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      + + I DV+K   G  VH  +V  G  +  + +   ++   R+ +  NH+ATH
Sbjct: 511 GTLKSAEVNIDIKDVKKAPNGQHVHEGVVVSGTAKKGLEVTAEVESALRKGIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LGSHV+Q GS +  + LRFD +H   +T  EL  IE  VN+ I + + V  
Sbjct: 571 LLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGISVAI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  I 
Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLFKIA 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   L  Q   L+  AS LK +  +V  R+  +  + +++Q
Sbjct: 686 SESGIGAGTRRIEAVTGKGAYEELNDQLTILEQAASELKSNTKDVPKRIASLQADLKEVQ 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L+  +         +I  V  ++  ++  D   L++++D L+ K+ S +I+
Sbjct: 746 RENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G  +  K ++   VT+D++++  +A  L + +A++  GGGGGGRP MAQ+GG    K 
Sbjct: 806 L-GAVQNGKVNISAGVTKDVIEKGLHAGKLVKQAAEIC-GGGGGGRPDMAQAGGKQPEKL 863

Query: 886 DQAIAGVASFLK 897
           ++A+A V   +K
Sbjct: 864 EEALAIVEESVK 875


>gi|90962086|ref|YP_536002.1| alanyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|122448814|sp|Q1WT32|SYA_LACS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|90821280|gb|ABD99919.1| Alanyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 880

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 352/932 (37%), Positives = 524/932 (56%), Gaps = 86/932 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIF
Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           FD+G+ +       P   PG   E ERY+EIWN+VF +F  +       LP  +IDTGMG
Sbjct: 173 FDRGQEMNNLPEDDPESYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 230

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LER+ +V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F I
Sbjct: 231 LERVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAI 290

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    
Sbjct: 291 GDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEF 350

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++ 
Sbjct: 351 IEKVIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEY 410

Query: 405 LCARGLAGIDIISFNQALEEQR-----SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
               GL  +D   FN+ +E+Q+     +R+ A S+G+ +G    I  S       ++++G
Sbjct: 411 ANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGLLTDITTS-------SEYVG 462

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L+                     NGV   +K I+   E+V+   +  + +V+FD+TP
Sbjct: 463 YHELKA--------------------NGV---LKDIIIDNELVDTVPADSRAQVIFDKTP 499

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G        +  ++ DVQ    G  +H  HA+ E   +  E +  L +
Sbjct: 500 FYAEMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKE---MTRENTYSLEV 556

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D     ++  NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK I
Sbjct: 557 DVAFHNKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKI 616

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED VN  I +N+ V T + ++E A   GA AL G KY D VRVV V     G +S   CG
Sbjct: 617 EDIVNAKIWENIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCG 671

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV++T EI L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK+ Q  
Sbjct: 672 GTHVANTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIK 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVD---SKE 808
            V R  E  +E  KL L   K+ L+              I D+N  + I  +V+     +
Sbjct: 732 EVPRKIEQLQEQVKL-LEQQKQALEDKFASQQAGDIFKNIKDINGKTLIAGQVNVSGMSQ 790

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGG 866
           L+ + D  ++K  S +++L   + + K +++  ++ D +   + A DL + ++ KV   G
Sbjct: 791 LRQLADQWKEKQLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVG--G 848

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGRP +AQ+GG       +A+     +L K
Sbjct: 849 GGGGRPDLAQAGGKKPEGIQEALKAAEDWLNK 880


>gi|218129222|ref|ZP_03458026.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697]
 gi|217988600|gb|EEC54920.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697]
          Length = 873

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 344/923 (37%), Positives = 509/923 (55%), Gaps = 87/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI + ++ E++ F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL    +   DI  F+  +++Q+ RAR ++  + +G     W +L+E  G T+F+GY  
Sbjct: 418 LILRENDMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D+TPF
Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLDKTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756
           ++TG I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +    G +
Sbjct: 671 AATGNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSGAI 730

Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        E++ K +    K KL  N+++++  K+  + F + +I    +  +K
Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKV--IKFCAAMIP---ADAIK 785

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G   E K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +    A+  V
Sbjct: 845 GQPHFATAGGKNPDGLSAAVDKV 867


>gi|301310907|ref|ZP_07216836.1| alanine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300830970|gb|EFK61611.1| alanine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 873

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 340/914 (37%), Positives = 503/914 (55%), Gaps = 70/914 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV+        D D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +      +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR ++  + +G     W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                        C+   +          + I Q+ +++         ++V DQTPFYAE
Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVAKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q +   +L++L + +      +   
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +EE  E  ++++    ++ ++L  E ++    ++   +   + + ++  +K+V   ++ +
Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                + + GI  + K ++++++++DL+    +A  + + +AK +  GGGGG+PH A +G
Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852

Query: 879 GPNGNKADQAIAGV 892
           G N      A+  V
Sbjct: 853 GKNMEGLSIAVGAV 866


>gi|254391331|ref|ZP_05006535.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197705022|gb|EDY50834.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 869

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 343/913 (37%), Positives = 512/913 (56%), Gaps = 84/913 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +  
Sbjct: 1   MMESAEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLINAGMVPFKPYFLGETKPPFPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT     
Sbjct: 60  ATSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVED 115

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L+  +L+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI
Sbjct: 116 GGYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229
            +D+G    G   G +   ERY+EIWNLVFMQ+E+   + K++  IL   P  +IDTG+G
Sbjct: 176 NYDRGPAF-GAEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ D  + ++  + ++TG++Y  ++   V+ RVI DH+R+S  LI 
Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  I
Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    +E+ RF KTL+ G  +L+G ++        +L GD AF L+DT G P+D+  +I 
Sbjct: 355 EAVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL+ +D   F + ++EQR++A+A +    +G  +   +  + +  GAT+F GY    
Sbjct: 415 AEQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGY---- 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T G S+IV  +V  G     A  G +VEVV D+TPFYAE 
Sbjct: 470 ------------------AATEGESTIVGLLV-DGVPSPAATEGDEVEVVLDRTPFYAEG 510

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR +
Sbjct: 511 GGQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAI 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL H AL   LG   +Q GS  +P   RFD      +  + L  +E  +N+++
Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVL 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T 
Sbjct: 631 SRELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTA 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+
Sbjct: 686 QLGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEEL 738

Query: 764 WEEYRKLQLIHAKRK-LQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SK 807
            E   K+  + AK K  +  +E     K+            D++ ++ +   V+    + 
Sbjct: 739 PE---KISGMLAKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSAD 795

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLG 864
           +L+ ++  ++ +I      +V +        L V+  +   R     A DL R +AK LG
Sbjct: 796 DLRRLVLDVRGRIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLRAGDLVRTAAKTLG 855

Query: 865 G---GGGGGRPHM 874
           G    G G RP +
Sbjct: 856 GLLVPGSGRRPGL 868


>gi|322806901|emb|CBZ04471.1| alanyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 879

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 339/916 (37%), Positives = 527/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q     +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+
Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTNIVIENCYKNYPELEEKREYIKKIIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V S V  I++  E   E   G +  +V   TPFYAE GGQ+
Sbjct: 467 -------------------VKSKVTVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+
Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   
Sbjct: 568 ATHILHAALIEVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKKVEKVVNKEIMKANA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I + 
Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            IVSE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED   + I +   V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFIAMATKDTVAK--GVHCGKIIKEVAAIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK + AI  V + ++
Sbjct: 860 PNKLEDAIKTVETVVE 875


>gi|309810794|ref|ZP_07704600.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308435274|gb|EFP59100.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 904

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 347/935 (37%), Positives = 513/935 (54%), Gaps = 89/935 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF+  GH ++PS+ LI  +DP L+F N+GMVPFK  F GQ  P +   T+
Sbjct: 3   TAEIRRRWLQFFEGKGHTVVPSAPLI-YDDPNLLFVNAGMVPFKPYFLGQATPTFTRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFKE AI+ AW+LLT+      +
Sbjct: 62  VQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKEDAIKFAWELLTRHQSQGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL+ TV++ D+EA+ +WK + G+ A +I R   NDN+WSM   GP GPCSEIFFD
Sbjct: 118 GLDADRLWPTVFESDDEAYAIWKDVIGVDAARITRRDANDNYWSMGVPGPGGPCSEIFFD 177

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +G    + GG P   E+  RY+EIWNLVFMQ+E    + +        LP+ +IDTGMGL
Sbjct: 178 RGAEYGVEGG-PAVDED--RYMEIWNLVFMQYELSAVRSKADFDVAGELPRRNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ERMA+VLQ   N Y+ID    ++  + ++TG +Y  N          + V+ RV+ DH+R
Sbjct: 235 ERMASVLQGVDNLYEIDEVYPVLDMAAEMTGKRYGANSGQSAASSHPDDVHLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P NEGRGYVLRR++RRA+   RLLGY +P + HL+P     M  +YPEL
Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRAMRLLGYADPALPHLVPISMERMSQSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------GKDEILNGDVAFKLY 391
                 I +   +E+E F +TL  G  +LD  ++           G   +L GD AF L+
Sbjct: 355 KTDFARISQIAYAEEEAFRRTLVAGTTILDTAVAKAKQTTDQQAGGDKPVLTGDQAFSLH 414

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKE 450
           DT+G P+D+  ++   +G++ +D   F + ++EQR RA+A +    +G  +  +W  L+E
Sbjct: 415 DTYGFPIDLTLEMAAEQGVS-VDEAGFCRLMDEQRQRAKADAKAKKAGHGDVAVWTQLRE 473

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             GAT+F+ Y+ L+                         + V+ +V  G  VE+   GQ 
Sbjct: 474 A-GATEFLAYETLQ-----------------------AEASVRGLVANGSAVEQLEPGQS 509

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +VV D+T FYAE+GGQ+ D G  +    RL++ DVQ+  +G+  H   V  G +R    
Sbjct: 510 GQVVLDRTSFYAESGGQIADEGIIVTPAGRLKVVDVQRPVKGLIAHTVEVLDGPVRVGEG 569

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D + R      HS TH++H AL  +LG    Q+GS   P  LR D   +  ++  
Sbjct: 570 VHTQVDPEWRISACQAHSGTHVVHAALREVLGPSALQSGSYNKPGYLRLDFAWNSALSPE 629

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
               IE+  N  + ++LPV  + M   +A   GA AL G  Y+++VRV+ +    GG  S
Sbjct: 630 TRSEIEEVSNLALRRDLPVAAQYMTLPEAKEWGAIALFGETYDEQVRVIEI----GGPWS 685

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV+ + +I  L +  ESS+ +G+RR+EA  G  A  +L  +   +  L S  K
Sbjct: 686 RELCGGTHVAHSSQIGALTLTGESSVGSGVRRLEAFVGIDAMRYLAKERALVADLTSMTK 745

Query: 751 VSQGNVVGRVEE----IWEEYRKL------QLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
              G +  ++ E    I +  R+L      Q+  A   L    +D     +  V F+ H 
Sbjct: 746 AQPGELKDKISEMLTRIKDAERELSRLKQQQMAAAAGSLVEQAKD-----VFGVRFIGHH 800

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLAR 857
              +D+   +++   L+ K+      +V +    K   +IV+  +      R  A DL +
Sbjct: 801 DDAIDADAARAMATDLRAKLGDATPSVVAVGGVSKGRPVIVIATNAPAREWRVKAGDLVK 860

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           ++A VL GGGGGG+P +AQ GG + +K   AIA V
Sbjct: 861 VAAGVL-GGGGGGKPDLAQGGGQDASKLGAAIAEV 894


>gi|255015752|ref|ZP_05287878.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 873

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 340/914 (37%), Positives = 503/914 (55%), Gaps = 70/914 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV+        D D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +      +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR ++  + +G     W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                        C+   +          + I Q+ +++         ++V DQTPFYAE
Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q +   +L++L + +      +   
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +EE  E  ++++    ++ ++L  E ++    ++   +   + + ++  +K+V   ++ +
Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                + + GI  + K ++++++++DL+    +A  + + +AK +  GGGGG+PH A +G
Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852

Query: 879 GPNGNKADQAIAGV 892
           G N      A+  V
Sbjct: 853 GKNMEGLSIAVGAV 866


>gi|148380519|ref|YP_001255060.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932600|ref|YP_001384806.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153937856|ref|YP_001388276.1| alanyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|205830027|sp|A7FWJ5|SYA_CLOB1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830031|sp|A5I4Z5|SYA_CLOBH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148290003|emb|CAL84122.1| putative alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928644|gb|ABS34144.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152933770|gb|ABS39269.1| alanine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 879

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 339/916 (37%), Positives = 527/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDMDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q     +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+
Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V S V  I++  E   E   G +  +V   TPFYAE GGQ+
Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+
Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   
Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I + 
Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            IVSE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK + AI  V + ++
Sbjct: 860 PNKLEDAIKTVETVVE 875


>gi|75906451|ref|YP_320747.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|123745317|sp|Q3MGN4|SYA_ANAVT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|75700176|gb|ABA19852.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 880

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 352/911 (38%), Positives = 525/911 (57%), Gaps = 63/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IRT FL+F+ + GH++L S+SL+P  DPT++ T +GM+PFK IF GQ  P ++  TT 
Sbjct: 11  NEIRTRFLDFYAQRGHQILASASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFKE+AI   W++ T+ F L + R
Sbjct: 70  QKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V++ED+EA+ +W+   G++  +I R+  +DNFW    TGPCGPCSEI++D      
Sbjct: 126 LVVSVFEEDDEAYVIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYD-FHPER 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLER+  +LQ+  NNY
Sbjct: 185 GDENIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQQVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + ++ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGYVL
Sbjct: 245 ETDLIFPIIETAAKIAGIDYHSSDETTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G +   +  +         SAYP + + + +I+  L  E+  F KT
Sbjct: 305 RRLIRRVVRHGRLIGISGEFINQVAERAIALSESAYPNVRKRETVIKAELEREEANFLKT 364

Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LDRG  LL+ ++  + K    I++G+ AF LYDT+G PL++ Q+I     L  +D   FN
Sbjct: 365 LDRGEKLLEEIIQQVKKQGQTIISGESAFTLYDTYGFPLELTQEIAEENNLT-VDEDDFN 423

Query: 420 QALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
             +++Q  RA+A   ++ L   T +     L E   AT+FIGY            +    
Sbjct: 424 VEMQKQVERAKAAHETIDL---TVQGSLDKLAEHIHATEFIGY-----------SQATAT 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
            K  + L +GV            + EEA +G +V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 470 AKVEVLLVDGV------------VQEEAEAGTEVQIVLDKTPFYAESGGQIGDRGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           GI +Q+ DV+K+++  FVH   +ERG LR   S+   ID   RR+   NH+ATHLL  AL
Sbjct: 518 GIVVQVEDVKKESD-FFVHFGRIERGTLRVGDSVTAQIDRAGRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            TI+   +SQ GS ++ D LRFD    + +T+ E++ +E+ +N  IA+       ++   
Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTAEEIQQVEEQINTWIAEAHSAKIEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+       GV S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFP----GV-SMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--------- 768
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R         
Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751

Query: 769 KLQLIHAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           K QL  AK    L   D L  HKI     +   +  VD + LKS  + L +KI +G ++L
Sbjct: 752 KGQLAIAKSDSLLQTADTLGDHKI-----IVAQLEGVDPESLKSAAERLLQKIGNGAVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + +  K S++   + ++  +   A       AK+  GGGGGGRP++AQ+GG + +K  
Sbjct: 807 GSVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIAKIC-GGGGGGRPNLAQAGGRDASKLP 865

Query: 887 QAIAGVASFLK 897
            A+    S LK
Sbjct: 866 TALEQAQSELK 876


>gi|205830242|sp|Q30PA9|SYA_SULDN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 849

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 331/843 (39%), Positives = 476/843 (56%), Gaps = 73/843 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL FF+   H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+   P      + Q
Sbjct: 3   IREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T      + +L
Sbjct: 62  TCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           ++TV++ D+EA  LW  +  +S D+I+R+   DNFW M +TGPCGPCSEIFFDQG E   
Sbjct: 122 WVTVHESDDEAEALW--LRHVSIDRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKFS 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + +  ++NY
Sbjct: 180 GPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSNY 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
              LF  +I+  E +   +Y      ++RVI DH+R+S FL+A G+  +NEGRGYVLRRI
Sbjct: 240 SSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG++EP M  L+  +   MG  Y  L Q    ++E +  E+ RF KT+  
Sbjct: 300 LRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIAS 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  L H  KD I +G VAFKLYDT G PLD+ +D+L  + L  +D   F + ++E
Sbjct: 360 GIELFNAEL-HNTKD-IFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QRSRA+A   G G       +  L EK+    F+GY+        K+  +VL        
Sbjct: 417 QRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYES------TKQKSRVL-------- 462

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                +++       + +   V+G    V  D TPFYA++GGQ GD G   G     ++ 
Sbjct: 463 -----ALLDESYHHADKLSAGVNGW---VFLDTTPFYAQSGGQCGDIGELNGFA---KVL 511

Query: 545 DVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D  KK  G+ +     E+ + +  E+  V+ I   +R +++ +HSATHLLH  L  +LG 
Sbjct: 512 DT-KKFFGLNLSQISTEKELKVGDEVEAVVDI---SRGEITKHHSATHLLHAVLFDVLGD 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +    LRFD +H K I++ EL  IE  VN  I + +   T +M+ ++A  SG
Sbjct: 568 HISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKSG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A  G KY D VRVVS      G  S   CGG HV ++  I    I  ES + AG+RRI
Sbjct: 628 AKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A ++   Q E L+                  E+  E + L ++    +L+ N+
Sbjct: 683 EAVCGNAAFNYFSEQRELLR------------------EVEHEVKNLDILAGVARLKSNI 724

Query: 784 EDL--------SC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +L        SC     KI  +N +S ++ E+ S ++K  +D L+ + +S   +L  + 
Sbjct: 725 VELKKELHDAESCIKTDIKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQVK 784

Query: 832 KEK 834
            +K
Sbjct: 785 DDK 787


>gi|168180547|ref|ZP_02615211.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182668624|gb|EDT80603.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 879

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 339/916 (37%), Positives = 527/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q     +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+
Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFKGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V S V  I++  E   E   G +  +V   TPFYAE GGQ+
Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+
Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   
Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I + 
Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            IVSE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK + AI  V + ++
Sbjct: 860 PNKLEDAIKTVETVVE 875


>gi|78778092|ref|YP_394407.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|78498632|gb|ABB45172.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 851

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 331/843 (39%), Positives = 476/843 (56%), Gaps = 73/843 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL FF+   H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+   P      + Q
Sbjct: 5   IREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSCQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T      + +L
Sbjct: 64  TCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEKL 123

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           ++TV++ D+EA  LW  +  +S D+I+R+   DNFW M +TGPCGPCSEIFFDQG E   
Sbjct: 124 WVTVHESDDEAEALW--LRHVSIDRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKFS 181

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + +  ++NY
Sbjct: 182 GPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSNY 241

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
              LF  +I+  E +   +Y      ++RVI DH+R+S FL+A G+  +NEGRGYVLRRI
Sbjct: 242 SSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRRI 301

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG++EP M  L+  +   MG  Y  L Q    ++E +  E+ RF KT+  
Sbjct: 302 LRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIAS 361

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  L H  KD I +G VAFKLYDT G PLD+ +D+L  + L  +D   F + ++E
Sbjct: 362 GIELFNAEL-HNTKD-IFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQE 418

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QRSRA+A   G G       +  L EK+    F+GY+        K+  +VL        
Sbjct: 419 QRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYES------TKQKSRVL-------- 464

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                +++       + +   V+G    V  D TPFYA++GGQ GD G   G     ++ 
Sbjct: 465 -----ALLDESYHHADKLSAGVNGW---VFLDTTPFYAQSGGQCGDIGELNGFA---KVL 513

Query: 545 DVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           D  KK  G+ +     E+ + +  E+  V+ I   +R +++ +HSATHLLH  L  +LG 
Sbjct: 514 DT-KKFFGLNLSQISTEKELKVGDEVEAVVDI---SRGEITKHHSATHLLHAVLFDVLGD 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +    LRFD +H K I++ EL  IE  VN  I + +   T +M+ ++A  SG
Sbjct: 570 HISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKSG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A  G KY D VRVVS      G  S   CGG HV ++  I    I  ES + AG+RRI
Sbjct: 630 AKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A ++   Q E L+                  E+  E + L ++    +L+ N+
Sbjct: 685 EAVCGNAAFNYFSEQRELLR------------------EVEHEVKNLDILAGVARLKSNI 726

Query: 784 EDL--------SC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +L        SC     KI  +N +S ++ E+ S ++K  +D L+ + +S   +L  + 
Sbjct: 727 VELKKELHDAESCIKTDIKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQVK 786

Query: 832 KEK 834
            +K
Sbjct: 787 DDK 789


>gi|307152653|ref|YP_003888037.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306982881|gb|ADN14762.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 881

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 350/902 (38%), Positives = 524/902 (58%), Gaps = 56/902 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ FL+F+ K  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+K  Y   TT 
Sbjct: 11  SEIRSYFLDFYAKKEHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQKSDYPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L   R
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFGLPANR 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V+ ED+EAF+LW+   G+   +I R+   DNFW    TGPCGPCSE+++D    + 
Sbjct: 126 IIVSVFQEDDEAFELWRDKIGIPPHRIKRMGEEDNFWKSGPTGPCGPCSELYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GDKNIDLEDDSRFIEFYNLVFMQYNRDAQGNLTPLQNKNIDTGMGLERMAQILQKVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQ++ ++ G+ Y   +    ++ +VI DH+R+   +IADGI  +N GRGY+L
Sbjct: 245 ETDLIFPIIQSAAEIAGIDYKKADEKTKISLKVIGDHVRAVVHMIADGITASNVGRGYIL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +     +     YP +   +  I+  L+ E+  F  T
Sbjct: 305 RRLIRRVVRHGRLIGIDGAFINKVAEVAISLSEDIYPIVRVRETPIKAELQKEEAAFLVT 364

Query: 362 LDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L+RG  LL  +++ +   K + ++G  AF LYDT+G PL++ Q+I   +GL  +D   FN
Sbjct: 365 LERGEKLLSEIIADVKRRKKKQISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDEDQFN 423

Query: 420 QALEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           + +++Q+ R++A   ++ L   G+ +K    L E    TQF+GY          +D   +
Sbjct: 424 EEMKKQQERSKAAHETIDLTVQGSLDK----LAEHIHPTQFLGY----------QDAASV 469

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            Q             ++ ++  G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G   G
Sbjct: 470 AQ-------------IEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYITG 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           + + +++ DVQK++   FVH   VERG +    ++  TID   RR++  +H+ATHLL  A
Sbjct: 517 ENLVIRVEDVQKES-AFFVHFGRVERGTVSVGDTITATIDRACRRRVQAHHTATHLLQAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  I+   VSQ GS +T D LRFD    + +T  EL+ IED +N  IA+     T IM  
Sbjct: 576 LKKIVDESVSQAGSLVTFDRLRFDFNCPRAVTPQELQQIEDLINSWIAEAHDAHTYIMAL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A A GA A+ G KY   VRV+ V     GV S  LCGGTHV +T EI L  I+SES I
Sbjct: 636 EEAKAKGAVAMFGEKYGAEVRVLDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEA+ G     +L  +D  +K L    KV    +  R+  +  E +    QL  
Sbjct: 691 ASGVRRIEAVAGPAVLEYLNERDTVVKDLCDRFKVKPNEISDRITALQSELKATLKQLEA 750

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGIS 831
           A+++L +   D        V     +++E   VD   L +  + LQ+K+  G ++L  IS
Sbjct: 751 AQQELAIAKSDQLLANADAVGEFKVLVAEMEGVDPNGLMTAAERLQQKLGEGAVILGAIS 810

Query: 832 KEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E K S++   +  ++   +  A       AK+  GGGGGGRP++AQ+GG + +K   A+
Sbjct: 811 AEGKVSLVAAFSPKVVKEKKLQAGKFIGEVAKIC-GGGGGGRPNLAQAGGRDPSKLKDAL 869

Query: 890 AG 891
           + 
Sbjct: 870 SA 871


>gi|313895726|ref|ZP_07829282.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975852|gb|EFR41311.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 875

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/918 (37%), Positives = 518/918 (56%), Gaps = 77/918 (8%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R T+L+FF +K  H  L S SLIP +DPTL+   +GM P K  FTG+ KP    +TT
Sbjct: 7   NELRETYLQFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPRPRITT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L + 
Sbjct: 67  SQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++++Y +D EA  +W +  GL  D I+ +  NDNFW +   GPCGP SEI+ D GE  
Sbjct: 123 KLWVSIYPDDNEARAIWLEQPGLLPDHIVPL--NDNFWEIG-PGPCGPDSEIYIDLGEER 179

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R++EIWNLVF Q+++  + E  +L   +IDTG GLER+A+V+Q K 
Sbjct: 180 GCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQNKE 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N++ DL   +I  + +++G+ Y  +    ++ +VI DH RS S +I DGILP+NEGRGY
Sbjct: 240 TNFETDLLYPIIAYASKISGVAYGSDKRKDISLKVIADHARSISVMIMDGILPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDER 357
           VLRR +RRA+ + R+LG T+P +   + A+      A  + EL   +  I+  +R E+ER
Sbjct: 300 VLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVEEER 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL +G+ LL+G +  L ++   +L GD+ FKLYDT+G P ++ ++IL   G+  +D 
Sbjct: 360 FASTLAQGMELLNGEIGRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT-LDG 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F++ +E QRSRAR       S   E    ++ +       I    LR     KE    
Sbjct: 419 VEFDKEMEAQRSRAR-------SARAENQVVAVPD----LSNIDTSALRSDSTAKE---- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         ++V AI + GEIV+    G+   ++ D+TPFYAE GGQ+GD G   
Sbjct: 464 --------------AVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEGVLR 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D   + I++ +K  +G   H A VE G +     + +T++ + +   + NH+ATHLL  
Sbjct: 510 SDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHLLQA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS +TPD LRFD T+ +P+T  +++ IE+ VN  I +++ +   +M 
Sbjct: 570 ALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDISMMP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             DA   GA AL G KY D VRVVSV        S  LCGG+HV +TG+I L  I+ ES 
Sbjct: 630 IADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIGESG 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----- 770
           + AG+RRIEAITG+ A S+       ++ ++  LK    ++  ++++  +E + +     
Sbjct: 685 VAAGVRRIEAITGKAAFSYAATLYHTVQEISEKLKTRPEDLSSQIDKFLDERKAMQEQLR 744

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDS-KELKSVMDALQKKIQSGIIM 826
           Q    + K       ++  +I       H++   + VDS  EL+++ D   +K+  GI++
Sbjct: 745 QFAEFRDKADAQKLLMAVREIGAF----HVVVGKANVDSMDELRTIADLACEKLDHGIVI 800

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG------GGGRPHMAQSGGP 880
           L  +  +K   V +VV  D     NAV     + +++          GGGRP MAQ+GG 
Sbjct: 801 LAAVIDDK---VSLVVKADK----NAVSAGAHAGQIIKEAAKEVGGGGGGRPDMAQAGGK 853

Query: 881 NGNKADQAIAGVASFLKK 898
                 QA     S +++
Sbjct: 854 TPENIPQAFDAAISVIQR 871


>gi|198276957|ref|ZP_03209488.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135]
 gi|198270482|gb|EDY94752.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135]
          Length = 872

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 339/923 (36%), Positives = 504/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSILKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAASYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGEC-IPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D         +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    ++G KY  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKTDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LL+  ++     GK EI   D AF LYDT G P D+ +
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNETKAAGKTEISGVD-AFTLYDTFGFPFDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   GL   D+  F   +++Q+ RAR ++  + +G     W +LKE  G T F+GY  
Sbjct: 418 LILRENGLTA-DVKGFEAEMQKQKERAR-NAAAVETGD----WVTLKE--GETTFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V  +TPF
Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLSETPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   + I D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIDIIDT-KKENNLPIH--IAKKLPEHLEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +++ +E  VN
Sbjct: 557 AACAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQIREVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHV
Sbjct: 617 AKIRENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756
           S+TG+I ++ I+SESS+ AG+RRIEA+TG +         + +  L +    +   +  +
Sbjct: 671 SATGKIGMVKIISESSVAAGVRRIEAVTGAKVEEMFDTVQDTINDLKALFNNAPDLKAAI 730

Query: 757 VGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        EE+ K +    K KL    ++++  K+         +  + +  +K
Sbjct: 731 SKYIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIKA------VLPMPADAVK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           ++   L+ +    + +++G   E K  + + ++ED +    NA  L R +AK++  GGGG
Sbjct: 785 NIAFQLKGQFTENLFVVIGSVFENKPLLTVTMSEDQVKAGLNAGQLVREAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + A+  V
Sbjct: 844 GQPHFATAGGKNPDGLNTAVDKV 866


>gi|194333146|ref|YP_002015006.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|194310964|gb|ACF45359.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 885

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 348/908 (38%), Positives = 505/908 (55%), Gaps = 73/908 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR +FL++F   GH+++ S+ +IP  DPTL+FTN+GM  FK++F  +    Y    
Sbjct: 2   NSRDIRQSFLDYFSAKGHKIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L +
Sbjct: 62  DTQKCMRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTDVWKLPK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY TVY +DEE+F +W++ + +  D I++    DNFW M ETGPCGPCSEI  D  + 
Sbjct: 122 DRLYATVYKDDEESFLIWQQETDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTDD 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              G P  +    R IE+WNLVF+Q+ +        LPK  +DTGMG ER+  VLQ K +
Sbjct: 182 -SSGAPLVNAGDYRVIELWNLVFIQYNRMADGSLDPLPKKHVDTGMGFERVTAVLQGKRS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NYD D+F  L +A  +VTG+ Y    +G   +  RVI DH R+ +F I DG +P NEGRG
Sbjct: 241 NYDTDIFYPLFEAITEVTGVTYNASLDGEQDIAMRVIADHARALTFAITDGAMPGNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ YAR L   EP++  L+  +   MG  +PEL Q +  +++ ++SE+E F
Sbjct: 301 YVLRRILRRALRYARKLDSREPMIYKLVGVIARTMGDVFPELQQQQETVQKIVKSEEESF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TLDRG+ +   +   +  D  + + G+ AF+LYDT+G P+D+ + +    GL  ID  
Sbjct: 361 LSTLDRGMEIFGDITKAVKADNGKEIKGEDAFRLYDTYGFPIDLTRLMAAEVGL-DIDEK 419

Query: 417 SFNQALEEQRSRA---RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            F+  ++EQ++RA   R       S T E +W    E    T F+GY+ L          
Sbjct: 420 GFDVCMQEQKTRARMDRKEKQLAASETGEWLWL---ETPSPTVFVGYETLESD------- 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                      IV   V G ++++V D+TPFYAE+GGQ GD G 
Sbjct: 470 -------------------------ARIVGVKVVGDQLQLVLDRTPFYAESGGQTGDRGV 504

Query: 534 AIGDGIRLQITDVQKKAE-GIFVHHAIVERGI----------LRTEMSLVLTIDYQNRRQ 582
              +G  +++ D QK  +  + +   + +R                +++ +++D Q+R  
Sbjct: 505 IEAEGYSVEVVDTQKDGDMTVHIAATVQDRHTGEQIDPAAIDFSASVAVQVSVDRQSRLA 564

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL  +LG HV Q GS + PD LRFD +H + +++ EL+ +E  VN+ 
Sbjct: 565 TERNHTATHLLHAALRKVLGKHVQQKGSLVGPDRLRFDFSHFEKVSARELQLVEAEVNER 624

Query: 643 IAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +   +V    +  E+A+  GA A  G KY D VRVV V     GV S  LCGGTHVS+
Sbjct: 625 IREAGELVKHADIPYEEALEKGALAFFGDKYADLVRVVEVP----GV-SIELCGGTHVSN 679

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RV 760
            G I L  IVSESS+ AGIRRIEA+TG+ A   L  + ++L+ +   LK      V  +V
Sbjct: 680 VGRIGLFKIVSESSVAAGIRRIEALTGKAAEELLWNEYQELQQIRQLLKAHPDEGVAVKV 739

Query: 761 EEIWEEYRKL----QLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + EE + L    Q +     L   ++ L S  +I      +  + +  + +LKS+   
Sbjct: 740 QALLEEKKTLGKQVQDMQLSVLLDKALQQLDSSEEINGCRIFTMHVPDAGADDLKSLGQY 799

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPH 873
           L  +I  G  +L   S E K S++       + +   NA DL + +A+ +  GGGGG+P 
Sbjct: 800 LHDRIGCGAGLLASES-EGKVSLVAFAGPQAVRQCGVNAGDLVKKAAQEV-QGGGGGKPG 857

Query: 874 MAQSGGPN 881
            A +GG N
Sbjct: 858 FATAGGRN 865


>gi|302533385|ref|ZP_07285727.1| alanyl-tRNA synthetase [Streptomyces sp. C]
 gi|302442280|gb|EFL14096.1| alanyl-tRNA synthetase [Streptomyces sp. C]
          Length = 889

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 345/927 (37%), Positives = 518/927 (55%), Gaps = 88/927 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP     T+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGETKPPAPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY +D+EA  +W+ + G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEPEKLWITVYLDDDEAETIWRDVIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + K++  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290
           A +LQ   N Y+ D  + +++ + ++TG++Y   +G++ V+ RV+ DH+R+S  LI DG+
Sbjct: 238 AMILQGVQNMYETDTLRVVMEKATELTGVRYGAAKGSD-VSMRVVADHMRTSVMLIGDGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE  
Sbjct: 297 TPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLIDVVIDTMGQQYPELITDRKRIETV 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             +E+  F K +  G  +LD  ++        +L+GD AF L+DT G P+D+  ++   +
Sbjct: 357 ALAEEAAFLKAVKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSK 467
           GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY       
Sbjct: 417 GLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGY------- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            TN   S +  ++  G     A  G +VEVV D+TPFYAE GGQ
Sbjct: 469 ----------------ATNQGESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGGGQ 512

Query: 528 LGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           L D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR ++  
Sbjct: 513 LADQGRIKLDTGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIARA 572

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +ND++++ 
Sbjct: 573 HSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLSRE 632

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ 
Sbjct: 633 LDVTAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTSQLG 687

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--- 763
           L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K       GR EE+   
Sbjct: 688 LVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEK 740

Query: 764 --------------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                          E++R  +++ A   L  N +D+    +     +  +     + +L
Sbjct: 741 IASMLGKLKDAEKEIEKFRAEKVLQAAAGLASNAQDIRGVAL----VVGQVPDGTGADDL 796

Query: 810 KSVMDALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
           + ++  ++ +IQ     ++ L  ++ ++  +V I   E   +R   A DL R +AK L G
Sbjct: 797 RKLVLDVRGRIQGDRPAVVALFTVANDRPLTV-IATNEAARERGLKAGDLVRTAAKTL-G 854

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+P +AQ GG N     +AIA V
Sbjct: 855 GGGGGKPDVAQGGGQNPGAVPEAIAAV 881


>gi|126695385|ref|YP_001090271.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|205830177|sp|A3PA95|SYA_PROM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126542428|gb|ABO16670.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 886

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 334/917 (36%), Positives = 522/917 (56%), Gaps = 78/917 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P  +A T+ Q
Sbjct: 15  IRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L    +
Sbjct: 73  KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSVENI 128

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ EDEE+ K+W    G+  D+I+++   DNFWS  +TGPCGPCSE+++D       
Sbjct: 129 IVSVFHEDEESAKIWIDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHP--EK 186

Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           GL     E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K NNY
Sbjct: 187 GLQNIDLEDGDRFIEFYNLVFMQYNRDQNGKLTDLKFKNIDTGMGLERMAQILQKKQNNY 246

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQ   ++  + Y   +  N ++ ++I DH R+   LI+DG+  +N GRGY+L
Sbjct: 247 ETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGYIL 306

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF +T
Sbjct: 307 RRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFRET 366

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LLD ++S   K  +++G  AF+LYDT+G PL++  +I     ++ +D+  F + 
Sbjct: 367 LERGEKLLDELISSGQK--LISGFKAFELYDTYGFPLELTVEIAEENSIS-VDVKGFEEE 423

Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +  Q+ RA+A S  +     G+ E+      + +  T F GY+ L               
Sbjct: 424 MNAQKERAKAASSNIDLTLEGSLEREI----DLFNKTVFNGYNSLLS------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + +K I     +V++A  GQKV +V DQT FY E+GGQ+GD G      
Sbjct: 467 ----------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + + +V +K + +F+HH  +++GIL     +   +   NR + + NH+ATHLL  AL 
Sbjct: 517 VEVLVDNVMRK-KNVFLHHGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            I+   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +
Sbjct: 576 LIVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA A+ G KY+D VRVV+V     GV S  LCGGTHV +T E+    I+SE  I A
Sbjct: 636 ALEKGAVAMFGEKYDDEVRVVNVP----GV-SMELCGGTHVKTTSELGSFKIISEEGISA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E     LI+  ++
Sbjct: 691 GVRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQSE-----LINKNKE 745

Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA---LQKKI-QSGIIML 827
           +Q   ++++  K +        VN  S +++++D  +  S+  A   L   +    I++L
Sbjct: 746 IQKMKDEIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVIL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881
            GI   +   +L VV+  L D  +AV +   + K++        GGGGG+P+ AQ+G  +
Sbjct: 806 GGIPNPENRKLLFVVS--LGD--DAVKIGLHAGKLINEIARICSGGGGGKPNFAQAGAKD 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K   AI    ++L+K
Sbjct: 862 IDKLSDAIDYAKNYLQK 878


>gi|257892474|ref|ZP_05672127.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|257828853|gb|EEV55460.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408]
          Length = 819

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/864 (39%), Positives = 495/864 (57%), Gaps = 78/864 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY +D EA ++W +  GL  D II +   DNFW +   GPCGP +EIF
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+GE         P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMG
Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286
           LERM +++Q+ + N++ DLF  +I A E+++  +KY  N +  ++++VI DH+R+ SF I
Sbjct: 232 LERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  
Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++
Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D   F + ++ QR RAR A S     G    +   +K +   ++FIGY   
Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGYTE- 466

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + D ++L                  ++ +GE +   V+  + +++FDQTPFYAE
Sbjct: 467 -----QESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G  + +   I   +TDVQK   G F+H   V +  +    +  L ID   R 
Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+
Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++
Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T  I +  IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + 
Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810
           E++ ++ R+LQ    K   QL    L+  +  DV       N  + I ++V   D  +L+
Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEK 834
            + D  ++K  S I++L    KEK
Sbjct: 793 QLADQWKQKNISDILVLQTNKKEK 816


>gi|150009141|ref|YP_001303884.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298377115|ref|ZP_06987069.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|205830169|sp|A6LEZ8|SYA_PARD8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149937565|gb|ABR44262.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298266099|gb|EFI07758.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 873

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 339/914 (37%), Positives = 503/914 (55%), Gaps = 70/914 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV+        D D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +      +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR ++  + +G     W +LK+  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKD--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                        C+   +          + I Q+ +++         ++V DQTPFYAE
Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+   R M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q +   +L++L + +      +   
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +EE  E  ++++    ++ ++L  E ++    ++   +   + + ++  +K+V   ++ +
Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                + + GI  + K ++++++++DL+    +A  + + +AK +  GGGGG+PH A +G
Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852

Query: 879 GPNGNKADQAIAGV 892
           G N      A+  V
Sbjct: 853 GKNMEGLSIAVGAV 866


>gi|225389081|ref|ZP_03758805.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme
           DSM 15981]
 gi|225044859|gb|EEG55105.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme
           DSM 15981]
          Length = 887

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 321/839 (38%), Positives = 480/839 (57%), Gaps = 47/839 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK+ AI+  W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKDDAIRWTWEFLTEVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF++W +  G+ A++I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLEDDEAFRIWNEKIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 188

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RYIE+WN VF QF+   K     L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGKGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    ++   +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCELAHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     M  L   +       YPEL   K +I + L  E+++F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGQFMAGLAATVIELSKDGYPELEDNKAMIFKVLEQEEDKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+  ++ +    +  L G  AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 369 KTIDQGLSILNDRIADMQAKGENTLAGADAFKLYDTYGFPLDLTREILEEKGY-GVDEDG 427

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F  A++EQ+ +AR A       G    ++ S+      T+F+GY+ L             
Sbjct: 428 FAAAMKEQKDKARNARKTTNYMGADVTVYQSIDPAI-TTEFVGYNNLT------------ 474

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S +  +  + EIVE    GQ+  V+ +QTPFY   GGQ GD G   G
Sbjct: 475 -----------AESKITVLTTEDEIVEALTDGQRGTVITEQTPFYGTMGGQQGDVGVITG 523

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ D      G   H  ++  G+L+   ++ L++  +NR     NHSATHLL  A
Sbjct: 524 QNGEFKVEDTIHLQGGKVGHVGVMTHGMLQNGNTVTLSVCARNRALTCQNHSATHLLQKA 583

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q+GS +    LRFD TH   +T  EL  +E+ VN  I   LPV T++M  
Sbjct: 584 LRLVLGEHVKQSGSYVDAGRLRFDFTHFSAMTPEELGKVEELVNQEIRAGLPVETQVMTL 643

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A  +GA AL G KY D VRVV +     G  S+ LCGGTHV++TG I    I+SE+ I
Sbjct: 644 DEAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVANTGSIASFKILSETGI 698

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+T +    H    +++L   A   K +   +  ++E + EE + L   + K
Sbjct: 699 AAGVRRIEALTSEGLMKHYEEVEKELHEAAKTAKTTPAGLSAKIEGLLEEIKALSAENEK 758

Query: 777 RKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            K +L  + L    +++ +VN    ++  +++VD   L+ + D L+ K+  G++++  +
Sbjct: 759 LKSKLAKDSLGDVMNQVKEVNGVKVLASQVADVDMNGLRGLGDQLKDKLGEGVVLIASV 817


>gi|227529700|ref|ZP_03959749.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350366|gb|EEJ40657.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 884

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 333/927 (35%), Positives = 526/927 (56%), Gaps = 85/927 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHKIMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT +  F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNKWREV-GVAKDHLI--PDEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G    + +  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQTEKFSGSKKYGESKEDDIQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLENADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE++RF  TL+ GL LL+ V+++  KD    ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IKSEEDRFSATLNGGLNLLNNVIANAKKDGSNEIDGRTAFKLYDTYGFPIELTKEYASDE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W   K+   A++++GY       
Sbjct: 418 GLT-VDEDGFQAAMTEQQNRARNARDMDNGMGVQTDLWTDFKD---ASRYVGY------- 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                          DLT   + ++  +   G+  ++A  G K +EV+FD TPFYAE GG
Sbjct: 467 --------------TDLTVDNAKVI-GLAHDGKQADDAQPGDKNIEVIFDVTPFYAEMGG 511

Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576
           Q+ DTG  I + G ++ ++ DVQ         HA  ++ + R E++          L +D
Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELNAPLKKGARYKLVVD 562

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK++E
Sbjct: 563 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAKDLKAVE 622

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG
Sbjct: 623 KMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGG 677

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
            HV +T E+ L  IVSE  + AG+RRIEA+T   A + L  +D+ L  +A+ LKV+Q   
Sbjct: 678 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFNFLQDRDDLLNKVATDLKVAQIKE 737

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELK 810
           V  +VE +  + ++ Q   A  + ++  +       +  K A+ + ++  +      +L+
Sbjct: 738 VPHQVEALQSDLKEAQKQSAALQAKIAAQQANNVFENVQKTANGSLIAAEVQVAGMGQLR 797

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGG 869
            + D+ + K  S +++L G + + KA++L+ V++D + D   A DL ++ A  +  GGGG
Sbjct: 798 QLADSWRAKSLSDVLVL-GTANDGKANLLVAVSDDKVKDGLRAGDLIKVIAPAI-NGGGG 855

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           GRP++AQ+GG        A+   A +L
Sbjct: 856 GRPNLAQAGGKKPEGIQDALKQAADYL 882


>gi|157693144|ref|YP_001487606.1| alanyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|205829985|sp|A8FFM9|SYA_BACP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157681902|gb|ABV63046.1| alanine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 878

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 346/912 (37%), Positives = 513/912 (56%), Gaps = 62/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH + PS+SL+P +DPTL++ NSG+   K  F G+  P    +   
Sbjct: 7   AQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPDNPRICNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT +     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDEWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L +TV+ EDEEA+ LW+   G+  ++IIR+    NFW + E GP GP +EIF+D+GE 
Sbjct: 123 NLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGES 179

Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  P   PG   E ERY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 180 YGHDMNDPELYPGG--ENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A E ++G  Y          +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YP++   +  I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKVIKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +ERF +TL+ GL +L  V+      G  +I   DV FKLYDT+G P+++ ++      + 
Sbjct: 358 EERFHETLNEGLAILSEVIKKERDKGSSQISGEDV-FKLYDTYGFPVELTEEYAEDEHMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +E+QR RAR     +GS   +    +L +    + F+GY+ L     M E
Sbjct: 417 -VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENLTAVAHMIE 473

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                                  ++Q GEIV EA  G  V+++ D+TPFYAE+GGQ+ D 
Sbjct: 474 -----------------------LLQNGEIVSEAHEGDTVQILLDETPFYAESGGQVADK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      + + I DV+K   G  VH  +V  G  +  + +   ++   R+ +  NH+ATH
Sbjct: 511 GTLKSAEVIIDIKDVKKAPNGQHVHEGVVVSGTAKKGLVVTAEVESALRKGIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LGSHV+Q GS +  + LRFD +H   +T  EL  IE  VN+ I + + V  
Sbjct: 571 LLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGISVAI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  I 
Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLFKIA 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   L  Q   L+  AS LK +  +V  R+  +  + +++Q
Sbjct: 686 SESGIGAGTRRIEAVTGKGAYEELNDQLGILEQAASELKSNTKDVPKRIASLQADLKEVQ 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L+  +         +I  V  ++  ++  D   L++++D L+ K+ S +I+
Sbjct: 746 RENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G  +  K ++   VT+D++++  +A  L + +A++  GGGGGGRP MAQ+GG    K 
Sbjct: 806 L-GAVQNGKVNISAGVTKDVIEKGLHAGKLVKQAAEIC-GGGGGGRPDMAQAGGKQPEKL 863

Query: 886 DQAIAGVASFLK 897
           ++A+  V   +K
Sbjct: 864 EEALTSVEESVK 875


>gi|182418956|ref|ZP_02950213.1| alanyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237667051|ref|ZP_04527035.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377239|gb|EDT74807.1| alanyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237655399|gb|EEP52955.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 879

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 329/907 (36%), Positives = 524/907 (57%), Gaps = 60/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  + +R  +L+FF+  GH  L S SL+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FTKTNDLRDAYLKFFESKGHLKLDSFSLVPKNDNSLLLINAGMAPLKPYFTGLQEPPRKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKCVR G    D++NVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT+  ++
Sbjct: 63  VTTCQKCVRTG----DIENVGITSRHGTFFEMLGNFSFGDYFKKEVIPWAWEFLTEVLEM 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F + 
Sbjct: 119 PKDKLYVTIYLDDDEAYEFWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFSRT 177

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V+Q
Sbjct: 178 DDVPKNAEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEG 296
           EK + ++ID  ++++     + G++Y  N    ++ R+I DH+RS +F+I+D I+P+NEG
Sbjct: 238 EKNSIFEIDTLENILNEVANLAGVRYGENKKTDISLRLITDHIRSITFMISDDIMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  +  + +L   +  +   AY EL   +  I++ ++ E++
Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDSKEAYAELEAKREYIKKVIKIEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD G+ +L+G +S L ++  +IL+G   FKLYDT G P+++ ++IL   G + +D
Sbjct: 358 KFRETLDAGIEILNGFISELKENNKKILSGAEGFKLYDTFGFPMELTKEILEDEGFS-LD 416

Query: 415 IISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +F++ ++ QR RAR     ++ +G    T++ I   ++     T+F GY         
Sbjct: 417 EDAFHEEMKIQRERARNARKVSNYMGADVKTSDAISADVE-----TEFDGY--------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                           N +   V+ ++   +  +    G K  +V D TPFYAE GGQ+G
Sbjct: 463 --------------TNNQLQGKVEVLIDGEDFADSLTEGNKGILVTDVTPFYAEMGGQIG 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D  + ++ D +K   G  VH   V  G ++   ++ L ID + R ++  NH+A
Sbjct: 509 DTGLIYNDSFKAKVVDTKKNMGGKIVHFVEVLSGEVKINDTVTLEIDNERRERIRKNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LGSHV Q GS +T + LRFD +H + ++  ++  +ED VN+ I    PV
Sbjct: 569 THLLDRALVKVLGSHVHQAGSLVTDERLRFDFSHFEGLSEEDILKVEDLVNEAIMSVTPV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           VT +M+  DA  SGA  +   KY D+VRVV+      G +S  LCGGTH+ +TG+I L  
Sbjct: 629 VTEVMDLNDAKNSGAIGIFDDKYGDKVRVVT-----AGEYSKELCGGTHIDNTGKIGLFK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+SES I AG RRIEA+TG+ A   +  ++E LK     LK +Q  +  ++E+  +E ++
Sbjct: 684 ILSESGIAAGTRRIEAVTGKEAVKFINEKEELLKEACGKLKCTQKEITSKIEQNLKEIKE 743

Query: 770 LQLIHAKRKLQ---LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   +  K +   + ++D+  S  ++  +N +S+ + +VDS  L+ V + ++ K+++ +
Sbjct: 744 KEKEISALKAKFAAMGLDDIIASSKEVKGINVVSYELKDVDSDTLREVCEKVKDKVENSV 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882
           ++L+    E    V+I          N     +L  +V  + GGGGGGRP MAQ+GG   
Sbjct: 804 VLLMS---ENAGKVIICAMASKDAVKNGAHCGKLIKEVSAILGGGGGGRPDMAQAGGKLP 860

Query: 883 NKADQAI 889
            K + AI
Sbjct: 861 EKINDAI 867


>gi|296185456|ref|ZP_06853866.1| alanine--tRNA ligase [Clostridium carboxidivorans P7]
 gi|296050290|gb|EFG89714.1| alanine--tRNA ligase [Clostridium carboxidivorans P7]
          Length = 879

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 337/917 (36%), Positives = 524/917 (57%), Gaps = 68/917 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P    VTT
Sbjct: 6   LNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPKTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE AI  AW+  T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181
           +LY+T+Y +D+EA  LW K + +   +I R+  +DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHG-IGPCGPCSEIHFDRGNEK 180

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
              +   L  + E+  R +E WNLVF QF++        L   +IDTGMGLER+AT++Q 
Sbjct: 181 INTVEEFLKAADED--RVVEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  + ++    +V  ++Y  +  + ++ RVI DH+RS SF+I+DGILP+NEGR
Sbjct: 239 TNSIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVITDHVRSVSFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     +  L   +       Y EL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGNYAELAEKRDYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  + +L    + IL+G+ AFKLYDT+G P+++ ++IL  + +  +D+
Sbjct: 359 FDETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTYGFPIELTEEILEEKDMK-VDL 417

Query: 416 ISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             FN+ ++ QR RAR      + +G       KI   ++     T+F GYD L       
Sbjct: 418 EGFNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIE-----TKFNGYDTLH------ 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +S VK +++  E V   V G K  +V + TPFYAE GGQ+GD
Sbjct: 467 -----------------TTSKVKILIKNEEFVSTMVEGDKGVIVTENTPFYAEMGGQIGD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    D  + ++ D +K   G  +H   V  G +  +  + L ++   R  +  NH+AT
Sbjct: 510 HGIISTDSFKAEVVDCKKNVAGKILHFVKVLSGTIGVDHQVTLNVNEARRNNIRRNHTAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL+ AL  +LG HV Q+GS +  + LRFD  H +  +  ELK +E  VND I + L V 
Sbjct: 570 HLLNEALRKVLGEHVHQSGSYVDDERLRFDFNHFEAPSHEELKKVEALVNDEIVKVLNVQ 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T+ M+ E+A  +GA AL   KY D VRVVSV     G  S  LCGGTHVS++GEI L  I
Sbjct: 630 TQSMSLEEAKETGAIALFDNKYKDEVRVVSV-----GDFSKELCGGTHVSNSGEIGLFKI 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEE 766
           +SE+ + AGIRRIEA+TG +A +++  +++ +K + + L+ S+  ++ +++    E+ E+
Sbjct: 685 ISEAGVAAGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKLRCSEKEIIHKLDLQALELKEK 744

Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +  ++   K KL  + ED       ++  +   + ++ +VD   L+ + D ++ K    
Sbjct: 745 DK--EIAELKSKLAGSAEDEILNGFQEVKGIKLFTGVLKDVDGNALRDLADKIRNKGGEC 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G   E K   + + T++ + +   V   ++  +V  + GGGGGGRP MAQ+GG  
Sbjct: 803 VVVL-GSVVEGKVQFVSMTTKEAIAK--GVHCGKIIKEVAAIAGGGGGGRPDMAQAGGKL 859

Query: 882 GNKADQAIAGVASFLKK 898
             K + AI    S L+K
Sbjct: 860 PEKVEDAIGSCVSILEK 876


>gi|257792293|ref|YP_003182899.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|317490214|ref|ZP_07948702.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|257476190|gb|ACV56510.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|316910708|gb|EFV32329.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
          Length = 878

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 323/865 (37%), Positives = 483/865 (55%), Gaps = 63/865 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAV 61
           + IR  +L FF++ G +  PSSSLIP +DP+L+ T++GMV FK  F  Q   E P Y   
Sbjct: 7   AEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAP-YIGT 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFKE     A++  T+   L 
Sbjct: 65  TTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TVY +D+E  ++WKK+ G+  D I R+  +DNFW    TGPCGPCSEI+FDQGE
Sbjct: 121 AERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQGE 179

Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A +LQ 
Sbjct: 180 DFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAILQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ D+ + L+   E++TG  Y  +  ++   R++ DH R+ +F+IADGILP+NEGR
Sbjct: 240 VQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+ER
Sbjct: 300 GYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEEER 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG  L +G   LD  L+ L + E+L GD AF L+DT+G P+++ +++   RG+  +D+  
Sbjct: 360 FGSNLRQGRAFLDEALAEL-EGEVLPGDRAFTLHDTYGFPVEVTRELCDERGIE-VDMEG 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFS-------LKEKYGATQFIGYDLLRGSKFMK 470
           F + ++EQR RARA +    +   E  W +       + E  G T+F+GY          
Sbjct: 418 FGRCMDEQRERARAAN----TKDAEAAWSTYGGVMNEILEAVGPTEFLGY---------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          N   + V A+V+ G  V+   +G +  VV D TPFYAE GGQ+GD
Sbjct: 464 -------------TKNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGD 510

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    D   + + D ++  +G+  H   VE G L    ++   ID   R ++  NH+AT
Sbjct: 511 AGVLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N  I +N PV 
Sbjct: 571 HILHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANQKIMENHPVR 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  + I
Sbjct: 631 AYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKI 685

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     +  + L
Sbjct: 686 TSETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDL 745

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSG 823
           Q    KR  +   +D     L   + +   +  +   + E D+ +++++ D L+ ++   
Sbjct: 746 Q-TKLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQP 804

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848
              ++   K+ K ++L   T + ++
Sbjct: 805 GAAVLATEKDGKPTLLAAGTPEAVE 829


>gi|323344880|ref|ZP_08085104.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323094150|gb|EFZ36727.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 873

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 331/919 (36%), Positives = 514/919 (55%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKQPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   L
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVEVLHL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+T+++         D+EA + W K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTIFEGSPEENIPRDDEAARYWAK--HLPTDHIIEGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D +       +PG    +++  + IEIWN+VFMQF ++      +LP   IDTGM
Sbjct: 179 TEIHVDSRTPEEKAKVPGRELVNKDNPQVIEIWNVVFMQFNRKADGSLELLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLI 286
           G ER+  +LQ K +NYD D+F+ +I+   +++G KY E  +I V  RV+ DHLR+ +F I
Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIREISRLSGKKYGEHEDIDVAMRVVADHLRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ Y+   L   E  M  LLP L  EMG+AYPEL   + 
Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYSYTFLDQKEAFMYKLLPVLVREMGAAYPELSAQQE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LI   ++ E++ F +TL++G+ LL+  ++ L   GK+  L+G  AF+L+DT+G PLD+ +
Sbjct: 359 LIARVMKEEEDSFLRTLEKGINLLNAAMNELKAAGKN-CLDGAQAFRLFDTYGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            ++C      +D   F++ +E+Q++RAR  ++ + +G     W  L++  G  QF+GYD 
Sbjct: 418 -LICRENGFTVDEKQFDKEMEKQKARARNAAV-VENGD----WVVLRK--GEQQFVGYDY 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                 +   R+V  +K                                E+V D TPFY 
Sbjct: 470 TEHECHILRYRQVTQKKNTF----------------------------FELVLDYTPFYG 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G  +    +++I D  K+     +H  IV++         +  +D + R  
Sbjct: 502 EMGGQVGDQGVLVNGNEKVEIIDT-KRENNQSIH--IVKQLPKEPSADFMACVDTEKRDA 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VN++
Sbjct: 559 SAANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERMVNEM 618

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I Q+ P+   R    E+A   GA AL G KY D+VRVV          S   CGG H  S
Sbjct: 619 IRQDFPLDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFG------PSCEFCGGIHAKS 672

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--NVVGR 759
           TG I +  I+SESS+ AGIRR EA+TG+         ++ LK + +    ++    V+G+
Sbjct: 673 TGRIGMFKIISESSVAAGIRRFEAMTGKMCEETYYALEDTLKDIRTLFNNAKDLRGVIGK 732

Query: 760 -VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +EE     + ++  HA+   +   E +    I +   +   I  ++    K ++  +++
Sbjct: 733 YIEEHDLMKKDIEKFHAQTVERTKDEVIKRATIVNGTTVVRSILPIEPSAAKDLVFKIRE 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I   ++ ++G +   K  + +++++D++     NA  + R +AK++  GGGGG+PH AQ
Sbjct: 793 AIPQNLVCVIGSTVGDKPLLSVMLSDDMVKEHHLNAGQMIREAAKLI-QGGGGGQPHYAQ 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V + 
Sbjct: 852 AGGKNIDGINAAVDKVIAL 870


>gi|262408299|ref|ZP_06084846.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294645925|ref|ZP_06723596.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294805880|ref|ZP_06764750.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353851|gb|EEZ02944.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292638725|gb|EFF57072.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294446909|gb|EFG15506.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086606|emb|CBK68129.1| alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
          Length = 872

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/927 (37%), Positives = 512/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN+ +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  E+A   GA AL G KY DRVRV+    S+E+          CG
Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754
           GTHV++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F      
Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726

Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +  R        +++  E++ K +    K +L  NV+++  H I  + F + + +EV  
Sbjct: 727 RIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNVQEI--HGIKVIKFCAPLPAEV-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G +   K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +    A+  V
Sbjct: 840 GGGGGQPHFATAGGKNADGLPAAVEKV 866


>gi|159902592|ref|YP_001549936.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|205830180|sp|A9B9E5|SYA_PROM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159887768|gb|ABX07982.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 890

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 343/907 (37%), Positives = 527/907 (58%), Gaps = 72/907 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IRT FL FF + GH++LPS+SL+P +DPT++ T +GM+PFK +F G E+     V T QK
Sbjct: 20  IRTAFLHFFAERGHQVLPSASLVP-DDPTVLLTIAGMLPFKPVFLGHEERPSSRVVTSQK 78

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RH T+FEMLGNFSFG YFK+ AIQ AW+L TK F LD + L 
Sbjct: 79  CIRT----NDIENVGRTARHQTYFEMLGNFSFGDYFKKEAIQWAWELSTKTFGLDPKYLV 134

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-----QGE 181
           ++++ ED++A+++W+ I G++ D+IIR+   DNFWS   TGPCGPCSE+++D        
Sbjct: 135 VSIFREDDDAYEIWRNIIGVNPDRIIRMDEADNFWSSGPTGPCGPCSELYYDFNPELGNH 194

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           CI        E+  R+IE +NLVFM+F + +      L   +IDTGMGLERMA +LQ+  
Sbjct: 195 CI------DLEDDTRFIEFYNLVFMEFNRDSTGRLSSLSNCNIDTGMGLERMAQILQKVP 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   L++    + G+ Y+  +    ++++VI DH+R+   LI+DG+  +N GRG
Sbjct: 249 NNYETDLIYPLLEKVAYLVGVDYQKTDKKTRISYKVIGDHIRACVQLISDGVSASNLGRG 308

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRR++RR + + RLLG  +P ++ L     + M S YP+L++ + +I + L+ E+ RF
Sbjct: 309 YILRRLLRRIVRHGRLLGIPKPFLIDLGEVAISLMKSTYPQLLERRDVILKELQREELRF 368

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RG  LL  +LS+  K+  ++G+ AF+LYDT+G PL++ Q+I     +  +D+ +F
Sbjct: 369 LETLERGERLLADLLSNNPKE--ISGEQAFELYDTYGFPLELTQEIAEENSIE-VDLKAF 425

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A++ QR RA+A S  +     + +  +++E    T F GY+ L               
Sbjct: 426 EKAMQRQRIRAKAASTTIDLTLQDTLDKAVRE-LKPTNFKGYECLTE------------- 471

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     +S V+AI   GE+ +EA     ++V  D TPFY E+GGQ+GDTG    + 
Sbjct: 472 ----------TSTVQAIFINGELAQEAQENDVIQVALDITPFYGESGGQIGDTGILFKES 521

Query: 539 IRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +   + ++    +   +FVH  IV+ G L+    +   + + NRR+  INH+ATHLL  +
Sbjct: 522 VTNCLIEIDSVIRNNDVFVHRGIVKNGRLQVGDIIQSQVHHINRRRAQINHTATHLLQAS 581

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  I+GS +SQ GS ++ + LRFD   S P++S EL+ +E  +N  I+++  +V + M  
Sbjct: 582 LKEIVGSEISQAGSLVSFERLRFDFHCSSPVSSEELEKVEKKINLWISESHSLVVKEMKI 641

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DA  +GA A+ G KY   VRVV V     GV S  LCGGTHV++T +I    IV ES I
Sbjct: 642 DDAKQAGAVAMFGEKYGTLVRVVDVP----GV-SMELCGGTHVANTADIGAFKIVGESGI 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AGIRRIEA+ G     +   +D  ++ L+   KV    +V RV  + +E + L   LI 
Sbjct: 697 AAGIRRIEAVAGPGVFDYFNARDSVVRILSERFKVQSNEIVDRVIALQDEVKLLGKSLIK 756

Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830
           A+ ++          K   I   +++ H +  V S+ L+S    L  ++     ++L G 
Sbjct: 757 AQEEIAFAKTSALVSKATAIKSSHYIIHRLDGVPSEALQSAAKVLVDQLGDCSAVLLAGT 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLG------GGGGGGRPHMAQSGGPNG 882
             +   + +I+V       F A  +A    + K LG      GGGGGGRP+ AQ+GG + 
Sbjct: 817 PTQSDPNKVILVAA-----FGAKTVAHGLHAGKFLGPIAKMCGGGGGGRPNFAQAGGRDA 871

Query: 883 NKADQAI 889
              D+A+
Sbjct: 872 KPLDKAL 878


>gi|298480309|ref|ZP_06998507.1| alanine--tRNA ligase [Bacteroides sp. D22]
 gi|298273590|gb|EFI15153.1| alanine--tRNA ligase [Bacteroides sp. D22]
          Length = 872

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/927 (37%), Positives = 512/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN+ +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  E+A   GA AL G KY DRVRV+    S+E+          CG
Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754
           GTHV++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F      
Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726

Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +  R        +++  E++ K +    K +L  NV+++  H I  + F + + +EV  
Sbjct: 727 RIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNVQEI--HGIKVIKFCAPLPAEV-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G +   K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +    A+  V
Sbjct: 840 GGGGGQPHFATAGGKNADGLPAAVEKV 866


>gi|315924764|ref|ZP_07920981.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621663|gb|EFV01627.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 882

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 346/910 (38%), Positives = 515/910 (56%), Gaps = 53/910 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  L S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   LNEIRERYLAFFESKGHLRLKSFSLVPHNDKSLLLINSGMAPMKAYFTGDEVPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+DNVG+T RH TFFEM+GNFSFG YFK   I  AW+ +T +  +D  
Sbjct: 66  CQKCIRT----PDIDNVGKTARHGTFFEMMGNFSFGDYFKPEVIPWAWEFITDKMGMDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++Y+T+Y +D+ A  LW+ + G++ D I+R+   DNFW    TGPCGPCSEIF+D+GE  
Sbjct: 122 KIYVTIYLDDDTAHDLWRSV-GVAEDHIVRLGKEDNFWEHG-TGPCGPCSEIFYDRGEAY 179

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R++E WNLVF QF++        L   +IDTGMGLERMAT+LQ   
Sbjct: 180 GCGKPTCGPGCDCDRFVEFWNLVFTQFDRDENDRYTPLDHPNIDTGMGLERMATILQGVD 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  +H++     + G  Y  +    V+ RVI DH+RS +F+I DGI+P+NEGRGY
Sbjct: 240 NIFEVDTIRHVLDYICSLCGEHYGDDAEKDVSIRVITDHIRSVTFMIGDGIMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  + RLLG     +  +   +    G AYPEL + +  I++ ++ E+ERF 
Sbjct: 300 VLRRILRRAARHGRLLGIKGTFLHDVAKEVVAVSGDAYPELKEKQKTIQKIIQIEEERFD 359

Query: 360 KTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            T+D+GL  L+ +L  L  +     I +G  AFKLYDT G P D+ ++I+  RG A I  
Sbjct: 360 ATIDQGLSQLNAMLEKLEAEAPGERIFSGAEAFKLYDTFGFPFDLTREIVEERGFA-IPY 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A++ QR RARA      +       F+         F+GYD L      K D K+
Sbjct: 419 EDFEKAMDAQRERARAARAESDTAVWADDPFNPLGADAVDAFVGYDAL------KADGKI 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-A 534
           L                  ++    +V+EA +G  V V+ DQT FYA++GGQ+GD+G   
Sbjct: 473 L-----------------GLIVNDTLVDEAKAGDNVLVLLDQTVFYAQSGGQVGDSGVIE 515

Query: 535 IGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             DG  R+ ++D +  +    +H+  VE G  +T  +++  ++  +R   + NH+ATH+L
Sbjct: 516 SADGTARIAVSDCRYGSLKRHIHYGKVESGSFKTGQTVISEVNKADRMATARNHTATHML 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS ++PD LRFD  H +P+T+ E+  +E  VN +I + +PV    
Sbjct: 576 QKALKQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTAEEIARVETIVNQVILEAMPVTIFE 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + ++A   GA AL G KY + VRVV V     G +S  LCGGTH+++  +  +  I+SE
Sbjct: 636 TDIDEAKKLGAMALFGEKYGNIVRVVRV-----GDYSIELCGGTHLTNAAQAGMFKILSE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE--YRKLQ 771
           S + AGIRRIEA TG      +   +  L+ ++  +K +   +V ++ E+ E+   +  +
Sbjct: 691 SGVAAGIRRIEAATGMNTYHEMARAEATLRKVSGMVKANPAQLVEKIAELEEQGKAQDRE 750

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLV 828
           +   K++   +        I ++  +   I+ VD     EL+ + D L+ K+ SG I ++
Sbjct: 751 IAALKQQQAGSAAGEIAQNIVEIAGVKAAIAGVDGMEMDELRELSDRLKDKMGSG-IAVI 809

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G     K + +   T+DL+ R F+A +L R  A+V  GGGGGGRP MAQ+GG    K   
Sbjct: 810 GTVNGGKINFIATATKDLVKRGFHAGNLIREVAQV-AGGGGGGRPDMAQAGGKRPEKMAD 868

Query: 888 AIAGVASFLK 897
           A+      +K
Sbjct: 869 ALEKAKDLIK 878


>gi|224025892|ref|ZP_03644258.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM
           18228]
 gi|224019128|gb|EEF77126.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM
           18228]
          Length = 872

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 340/923 (36%), Positives = 505/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+  I  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAYEYLVTVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPEEGLARDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    ++G KY  +  V+   RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKVDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LL+  ++     GK EI   D AF LYDT G P D+ +
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNEAKAAGKTEISGVD-AFTLYDTFGFPFDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   GL   D+  F   +++Q+ RAR ++  + +G     W +LKE  G T F+GY  
Sbjct: 418 LILRENGLTA-DVKGFEAEMQKQKERAR-NAAAVETGD----WVTLKE--GETTFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V   TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLSDTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   + I D  KK   + +H  I ++     +  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIDIIDT-KKENNLPIH--ITKKLPEHLDAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHS THLL  AL  +LG+HV Q GS +TPD LRFD +H + +T  +L+ +E  VN
Sbjct: 557 AACAANHSCTHLLDEALRQVLGTHVEQKGSLVTPDSLRFDFSHFQKVTPEQLREVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHV
Sbjct: 617 AKIRENIPLTEYRNLPIEKARELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQ 753
           S+TG+I ++ I+SESS+ AG+RRIEA+TG +         + L  L +       LK + 
Sbjct: 671 SATGKIGMVKIISESSVAAGVRRIEAVTGAKVEEIFDTVQDTLSDLKALFNNAPDLKAAI 730

Query: 754 GNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +     +++  EE+ K +    K KL    +D++  K+         +  + +  +K
Sbjct: 731 SKYIDENAGLKKQVEEFMKEKEASVKNKLIEGAKDINGVKVIKA------VLPMPADAVK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           ++   L+ +    + +++G   + K  + + ++ED +    NA  L R +AK++  GGGG
Sbjct: 785 NIAFQLKGQFTENLFVVIGSVFDNKPLLTVTMSEDQVKAGLNAGQLVREAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +    A+  V
Sbjct: 844 GQPHFATAGGKNPDGLSAAVDKV 866


>gi|288803286|ref|ZP_06408720.1| tRNA ligase [Prevotella melaninogenica D18]
 gi|288334327|gb|EFC72768.1| tRNA ligase [Prevotella melaninogenica D18]
          Length = 887

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 339/935 (36%), Positives = 511/935 (54%), Gaps = 94/935 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  T 
Sbjct: 3   ANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRRTD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L     LD
Sbjct: 63  SQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGNYFKEGAIDYAYEYLVDVLHLD 122

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCGPCS
Sbjct: 123 PKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGPCS 180

Query: 174 EIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDTGMG
Sbjct: 181 EIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTGMG 240

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVNHRV 274
            ER+  ++Q+K +NYD D+F  +I   E+++G KY     EG+N           +  RV
Sbjct: 241 FERLVRLMQDKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAMRV 300

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333
           + DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L  EM
Sbjct: 301 VADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVREM 360

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390
           G+AYPEL   + LI   ++ E++ F +TL++G++LL+G +  L   G+ + L+G  AF+L
Sbjct: 361 GTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQ-LDGKEAFRL 419

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + ++CA     +D   FN+ +E+Q++RAR ++  + +G     W  L+E
Sbjct: 420 FDTYGFPLDLTE-LICAENGYTVDEKQFNEEMEQQKARAR-NAAAVENGD----WEVLRE 473

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 474 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 503

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   + I D  K+     VH  IV+      E  
Sbjct: 504 YELVLDYTPFYGEMGGQVGDQGVLVSEDETISIIDT-KRENNQSVH--IVKELPKNLEAD 560

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT  
Sbjct: 561 FMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITDE 620

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV          
Sbjct: 621 ELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFG------P 674

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748
           S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L S  
Sbjct: 675 SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLRSMF 734

Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
                LK      V   + I +E    +     R  +  VE      +  V+ +  ++  
Sbjct: 735 NNAKDLKAVLTKFVEENDSIKKELESFRTQAVSRAAKNMVE--HAETVNGVHVVKTVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861
           +D    K ++  +++ +   ++ ++G   E +  + I++++D++  +  NA  + R +AK
Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYNLNAGKIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++  GGGGG+PH AQ+GG N +    A+  V   +
Sbjct: 852 LI-QGGGGGQPHYAQAGGKNADGIRSAVDKVIELI 885


>gi|226949919|ref|YP_002805010.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|226843074|gb|ACO85740.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 879

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 338/916 (36%), Positives = 526/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q     +++D  + ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDTIFEVDTIRAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+
Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V S V  I++  E   E   G +  +V   TPFYAE GGQ 
Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEMEKGNEGIIVTYNTPFYAEMGGQT 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+
Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   
Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I + 
Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            IVSE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK + AI  V + ++
Sbjct: 860 PNKLEDAIKTVETVVE 875


>gi|225570650|ref|ZP_03779673.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
 gi|225160477|gb|EEG73096.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
          Length = 879

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/909 (38%), Positives = 519/909 (57%), Gaps = 52/909 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLE+F+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEYFESKGHLIMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ +I+  W+ LT    L+  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLEPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EA+++W K  G++ ++I R    DNFW    +GPCGPCSE+++D+G   
Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGPKY 180

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A V+Q   
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACVVQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      +T  +Y  +    V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SMFDIDTIKALRDHVCHITKTEYGQDDETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I + +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLGVEGEFLVELARTVIEGSRDGYPELEEKKDFIFKVIAKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K  ++ L+GD AFKLYDT+G PLD+ ++IL  +GL+ +D   
Sbjct: 361 KTIDQGLSILAEMEAEMEKNGEKTLSGDHAFKLYDTYGFPLDLTKEILEEKGLS-VDEEG 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F  ++E QR  AR A  +    G    ++ S+  +   ++F+GYD L             
Sbjct: 420 FRASMEVQRRTAREAREVTNYMGADATVYESIAPEV-TSEFVGYDNL------------- 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAI 535
                        S V  +  + EI +    G +  V  ++TP YA +GGQ  D G    
Sbjct: 466 ----------SFESSVTVLTTETEITDALSDGDRGTVFVEKTPLYATSGGQEADKGYIRT 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ DV K   G   H   V +G+++T  ++ L +D +NR   + NHSATHLLH 
Sbjct: 516 ADG-EFRVEDVVKLLGGKIGHVGYVTKGMIKTGDTVTLEVDEENRALSARNHSATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG+HV Q GS +  + LRFD TH   +T  ELK +E+ VN  I   LPV    + 
Sbjct: 575 ALRTVLGTHVEQAGSSVNAERLRFDFTHFSALTKEELKKVEEIVNAQIMAALPVKVENLP 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  +GAAAL G KY D VRVVS+     G  S   CGGTHV +TG I    I+SE+ 
Sbjct: 635 IEEARKTGAAALFGEKYGDIVRVVSM-----GDFSVEFCGGTHVENTGVITAFKIISETG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+T +    +    +++L   A  +K S   +  ++  +  E + L  ++ 
Sbjct: 690 VAAGVRRIEALTSKGLLDYYDELEKRLAEAAKLVKASPDKLAEKITHLLAENKTLHSEVE 749

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL  +       ++ +V  +  + +E   VD   L+ + D L+ K+  G+I++   
Sbjct: 750 SLKSKLAQDAMGDVMDQVTEVKGVKLLATEVEGVDMNGLRDLGDQLKDKLGEGVIVIASA 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +   K +++   T+  +++  +A +L +  A ++ GGGGGGRP+MAQ+GG N +    AI
Sbjct: 810 AG-GKVNLMATATKGAIEKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPDGISSAI 867

Query: 890 AGVASFLKK 898
           A     L++
Sbjct: 868 AKAGEVLEE 876


>gi|119513305|ref|ZP_01632344.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414]
 gi|119462040|gb|EAW43038.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414]
          Length = 880

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 343/907 (37%), Positives = 524/907 (57%), Gaps = 55/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ    +   TT 
Sbjct: 11  NEIRDIFLNFFAQRGHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTAEFNRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI   W+L T+ F L   +
Sbjct: 70  QKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKPQAIAWGWELSTQVFGLPPEK 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+++D+EA+ +W+   G+   +I R+  +DNFW    TGPCGPCSEI++D    + 
Sbjct: 126 LVVSVFEDDDEAYNIWRDDIGVPEARIKRMGEDDNFWVSGHTGPCGPCSEIYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GDENIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + ++ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGYVL
Sbjct: 245 ETDLIFPIIETAAEIAGIDYHKSDETTQVSLKVIGDHVRSVVQMIADEIRASNVGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG     +  +     +   SAYP + Q +  I+  L+ E+  F +T
Sbjct: 305 RRLIRRVVRHGRLLGINSEFITQVAETAISLSESAYPNVRQREAAIKAELQREEANFLRT 364

Query: 362 LDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           LDRG  LL+ ++  +   GK  I +G+ AF LYDT G PL++ Q+I     L  +D   F
Sbjct: 365 LDRGEKLLEEIIQEVKQQGKTSI-SGESAFTLYDTFGFPLELTQEIAAENQLT-VDEAGF 422

Query: 419 NQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           N  +++Q  RA+A   ++ L   T +     L E   AT+FIGY                
Sbjct: 423 NTEMQKQVERAKAAHETIDL---TVQGSLDKLAEHIQATEFIGY---------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
               P+   N     V+AI+  G   EEA +G ++++V +QTPFYAE+GGQ+GD G   G
Sbjct: 464 --TQPVGTAN-----VEAILIDGIAQEEAEAGTEIQIVLNQTPFYAESGGQIGDKGYISG 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+ +++ DV+++++  F+H   +ERG +R   S+   ID   RR+   NH+ATHLL  A
Sbjct: 517 DGVLVRVEDVKRESD-FFIHFGRIERGTIRVGDSVTAQIDRTCRRRAQANHTATHLLQAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++   +SQ GS ++ D LRFD    + +T+AE++ +E  VN  IA+       ++  
Sbjct: 576 LKKLVDDSISQAGSLVSFDRLRFDFNCPRGLTAAEVEQVEAQVNTWIAEAHTANIEVLPI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A A GA A+ G KY + VRV+     D    S  LCGGTHVS+T EI +  I+SE+ +
Sbjct: 636 AEAKARGAVAMFGEKYGEEVRVI-----DFPSVSMELCGGTHVSNTAEIGIFKIISEAGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIH 774
            +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  + QL  
Sbjct: 691 ASGVRRIEAVSGPAILDYLNVRDKVVKDLSDRFKVKPEELPERITTLQTELRNSEKQLAT 750

Query: 775 AKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L +   D    +   + +   +   + +VD + LK+  + L +KI +G ++L  + 
Sbjct: 751 LKSQLAIAKSDSLLQTVESVGEYQILVAQMEDVDPESLKTAAERLLQKIGNGAVVLGSVP 810

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  K S++   + ++  +   A       AK+  GGGGGGRP++AQ+GG + NK  +A+A
Sbjct: 811 EAGKVSIVAAFSAEVNKKGLQAGKFVGAVAKIC-GGGGGGRPNLAQAGGRDANKLPEALA 869

Query: 891 GVASFLK 897
              S L+
Sbjct: 870 KAHSDLQ 876


>gi|282901157|ref|ZP_06309088.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193989|gb|EFA68955.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii
           CS-505]
          Length = 878

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 345/897 (38%), Positives = 520/897 (57%), Gaps = 55/897 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+F+ +  H+ LPS+SL+P  DPT++ T +GM+PFK IF GQ    ++  TT QK
Sbjct: 11  IRQLFLDFYTQRQHQPLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRAAEFKRATTSQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F+L   RL 
Sbjct: 70  CIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFELPAERLV 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V++ED+EAF +WK+  G+   +I R+  +DNFW    TGPCGPCSEI++D    + G 
Sbjct: 126 VSVFEEDDEAFNIWKQQVGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-GD 184

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  NNY+ 
Sbjct: 185 DHIDLEDDSRFIEFYNLVFMQYNRDVSGNLTPLQNKNIDTGMGLERMAQILQKVPNNYET 244

Query: 247 DLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   +I+ + ++  + Y   + N  V+ +VI DH+R+   +IAD I  +N GRGY+LRR
Sbjct: 245 DLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADDIRASNVGRGYILRR 304

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RL+G     +  +     +   S YP L Q + +I+  L  E+  F KTLD
Sbjct: 305 LIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQREAVIKAELEREESNFLKTLD 364

Query: 364 RGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           RG  LL  ++  +      I++GD AF LYDT+G PL++ Q+I   + L+ +D+  FN  
Sbjct: 365 RGEKLLGEIIQEVKHQGLTIISGDSAFTLYDTYGFPLELTQEIAQEQNLS-VDVEGFNTE 423

Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + +Q  RA+A   ++ L   G+ +K    L E   +T+FIGY  L               
Sbjct: 424 MHKQVERAKAAHETIDLTVQGSLDK----LAEHIHSTEFIGYRQL--------------- 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     ++ +  ++ +G     A  G  V++V D+TPFYAE+GGQ+GD G   GDG
Sbjct: 465 --------STTAKIAVLLVEGIAQSTAPVGTNVQIVLDKTPFYAESGGQIGDQGYIFGDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + ++I DV+K+++  F+H   +ERG ++   S+   +D  NRR+   NH+ATHLL  AL 
Sbjct: 517 LLIKIEDVKKESD-FFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            I+   +SQ GS ++ D LRFD    K +T  E++ +ED VN  I+Q  P    I+   +
Sbjct: 576 KIVDEGISQAGSLVSFDRLRFDFNCPKSLTEDEVQQVEDLVNAWISQAHPAQVEILPLPE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA A+ G KY D+VRV+       GV S  LCGGTHV++TGEI +  I+S+  + A
Sbjct: 636 AKARGAVAMFGEKYGDQVRVIDFP----GV-SMELCGGTHVNNTGEIGVFKIISQVGVSA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  + +    K
Sbjct: 691 GIRRIEAVSGAAVLDYLNVRDKVVKDLSDRFKVKPEEIPDRITILQTELRHNEKVIQNLK 750

Query: 779 LQLN-VEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            QL  V+  +  + A V     II    +++D + LK   + L +KI +G ++L  I + 
Sbjct: 751 SQLAIVKSDTLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIINGAVVLASIPEP 810

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            K S++   +  + ++   A       AK L GGGGGG+P++AQ+GG + +K  QA+
Sbjct: 811 GKVSIVAAFSSHVNEKGLQAGKFVGNIAK-LCGGGGGGKPNLAQAGGRDASKLPQAL 866


>gi|301300923|ref|ZP_07207095.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851522|gb|EFK79234.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 880

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 349/932 (37%), Positives = 524/932 (56%), Gaps = 86/932 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIF
Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           FD+G+ +       P   PG   E ERY+EIWN+VF +F  +       LP  +IDTGMG
Sbjct: 173 FDRGQEMNNLPEDDPESYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 230

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LER+ +V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F I
Sbjct: 231 LERVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAI 290

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    
Sbjct: 291 GDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEF 350

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++ 
Sbjct: 351 IEKIIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEY 410

Query: 405 LCARGLAGIDIISFNQALEEQR-----SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
               GL  +D   FN+ +E+Q+     +R+ A S+G+ +G        L +    ++++G
Sbjct: 411 ANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL-------LTDITTPSEYVG 462

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L+                     NGV   +K I+   E+V+   +  + +V+FD+TP
Sbjct: 463 YHELKA--------------------NGV---LKDIIIDNELVDTVPADSRAQVIFDKTP 499

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G        +  ++ DVQ    G  +H  HA+ E   +  E +  L +
Sbjct: 500 FYAEMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKE---MTRENTYSLEV 556

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D     ++  NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK I
Sbjct: 557 DVAFHNKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKI 616

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED VN  I +N+ V T + ++E A   GA AL G KY D VRVV V     G +S   CG
Sbjct: 617 EDIVNAKIWENIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCG 671

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV++T EI L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK+ Q  
Sbjct: 672 GTHVANTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIK 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVD---SKE 808
            V R  E  +E  KL L   K+ L+              + ++N  + I  +V+     +
Sbjct: 732 EVPRKIEQLQEQVKL-LEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQ 790

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGG 866
           L+ + D  ++K  S +++L   + + K +++  ++ D +   + A DL + ++ KV   G
Sbjct: 791 LRQLADQWKEKQLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVG--G 848

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGRP +AQ+GG       +A+     +L K
Sbjct: 849 GGGGRPDLAQAGGKKPEGIQEALKAAEDWLNK 880


>gi|212693638|ref|ZP_03301766.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855]
 gi|237724236|ref|ZP_04554717.1| alanyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265755936|ref|ZP_06090403.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212663891|gb|EEB24465.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855]
 gi|229437424|gb|EEO47501.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|263234014|gb|EEZ19615.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 872

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 345/921 (37%), Positives = 516/921 (56%), Gaps = 84/921 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG+   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K+
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKI 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++   FN  +++Q+ RAR ++  + +G     W ++KE  G T F+GYD 
Sbjct: 418 LILRENGMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD- 468

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                F + +  +L                + I Q+ + +         ++V   TPFYA
Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GDTG  + +   ++I D  KK   + +H  I ++     ++ ++  +D + R  
Sbjct: 502 ESGGQVGDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAA 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  
Sbjct: 559 CAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAK 618

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+P+   R +  E A   GA AL G KY D VRVV         +S   CGGTHVS+
Sbjct: 619 IRENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVSA 672

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGN 755
           TG+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +       LKV+   
Sbjct: 673 TGKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRK 732

Query: 756 VVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            +     +++  EE+ K +    K +L  N ++++  K+         I  + +  +K +
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDI 786

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
              L+ +I + + +++G     K  + ++++EDL+    NA  L R +AK++  GGGGG+
Sbjct: 787 AFQLKGEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQ 845

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           PH A +GG N +  + A+  V
Sbjct: 846 PHFATAGGKNPDGLNAAVDKV 866


>gi|325833382|ref|ZP_08165831.1| alanine--tRNA ligase [Eggerthella sp. HGA1]
 gi|325485306|gb|EGC87775.1| alanine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 878

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 323/865 (37%), Positives = 483/865 (55%), Gaps = 63/865 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAV 61
           + IR  +L FF++ G +  PSSSLIP +DP+L+ T++GMV FK  F  Q   E P Y   
Sbjct: 7   AEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAP-YIGT 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFKE     A++  T+   L 
Sbjct: 65  TTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TVY +D+E  ++WKK+ G+  D I R+  +DNFW    TGPCGPCSEI+FDQGE
Sbjct: 121 AERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQGE 179

Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A +LQ 
Sbjct: 180 DFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAILQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ D+ + L+   E++TG  Y  +  ++   R++ DH R+ +F+IADGILP+NEGR
Sbjct: 240 VQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+ER
Sbjct: 300 GYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEEER 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG  L +G   LD  L+ L + E+L GD AF L+DT+G P+++ +++   RG+  +D+  
Sbjct: 360 FGANLRQGRAFLDEALAEL-EGEVLPGDRAFTLHDTYGFPVEVTRELCDERGIE-VDMEG 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFS-------LKEKYGATQFIGYDLLRGSKFMK 470
           F + ++EQR RARA +    +   E  W +       + E  G T+F+GY          
Sbjct: 418 FGRCMDEQRERARAAN----TKDAEAAWSTYGGVMDEILEAVGPTEFLGY---------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          N   + V A+V+ G  V+   +G +  VV D TPFYAE GGQ+GD
Sbjct: 464 -------------TKNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGD 510

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    D   + + D ++  +G+  H   VE G L    ++   ID   R ++  NH+AT
Sbjct: 511 AGVLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N  I +N PV 
Sbjct: 571 HILHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIVEVERLANQKIMENHPVR 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  + I
Sbjct: 631 AYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKI 685

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     +  + L
Sbjct: 686 TSETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDL 745

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSG 823
           Q    KR  +   +D     L   + +   +  +   + E D+ +++++ D L+ ++   
Sbjct: 746 Q-TKLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQP 804

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848
              ++   K+ K ++L   T + ++
Sbjct: 805 GAAVLATEKDGKPTLLAAGTPEAVE 829


>gi|237714467|ref|ZP_04544948.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|229445631|gb|EEO51422.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
          Length = 871

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 347/921 (37%), Positives = 511/921 (55%), Gaps = 96/921 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ V   QK
Sbjct: 6   IRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQRVADSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L+   LY
Sbjct: 66  CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKLNPEHLY 125

Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPCSEI  D
Sbjct: 126 ATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPCSEIHID 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGMG ER+ 
Sbjct: 184 LRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
             LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I DG LP
Sbjct: 244 MALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSITDGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K LIE+ +
Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKTLIEKVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ + IL   
Sbjct: 364 KEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTELILREN 422

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  ++I  FN+ +++Q+ RAR ++  + +G     W  LKE  G T+F+GY        
Sbjct: 423 GMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-------- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                         D T   +SI+  + I Q+ + +         ++V D TPFYAE+GG
Sbjct: 467 --------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPFYAESGG 504

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R   + N
Sbjct: 505 QVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKRAACAAN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I  N
Sbjct: 562 HSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARIRAN 621

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCGGTHVSS 701
           +P+   R +  E+A   GA AL G KY DRVRV+    S+E+          CGGTHV++
Sbjct: 622 IPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CGGTHVAA 671

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVGR- 759
           TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F       +  R 
Sbjct: 672 TGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDLRIAIRK 731

Query: 760 -------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
                  +++  E++ K +    K +L  NV+++  H I  + F + + +EV    +K++
Sbjct: 732 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEI--HGIKVIKFCAPLPAEV----VKNI 785

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR 871
              L+ +I   +  + G +   K  + ++++++L+     A +L + +AK++  GGGGG+
Sbjct: 786 AFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGGGQ 844

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           PH A +GG N +    A+  V
Sbjct: 845 PHFATAGGKNADGLPAAVEKV 865


>gi|325479403|gb|EGC82499.1| alanine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 870

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 326/912 (35%), Positives = 511/912 (56%), Gaps = 66/912 (7%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R+ +L FF  +NGH LL S  LIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRSKYLNFFANENGHTLLKSFPLIPVDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A+  LTKE ++ +
Sbjct: 66  SSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYQFLTKELEISK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
             +++TV+ ED+EA+ +W    GL +++I+R    DNFW + E GPCGPCSEIF D+G  
Sbjct: 122 DDIWVTVFKEDDEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFVDRGSD 180

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  +   +++ +R++E+WNLVF QF +  +     L   +IDTGMGLER+A VLQ 
Sbjct: 181 RAVDENDVKPGNDDSDRFMEVWNLVFTQFNKDAQGNYTPLAHPNIDTGMGLERIAMVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
           K N +++D+   +I   E++ G+KY+ +    V+ RVI DH ++ +FL+ADG++P+NE R
Sbjct: 241 KDNIFEVDVMVEIISEIERLAGIKYKEDKKADVSIRVIADHAKAMTFLVADGVIPSNEKR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     + +++  +       Y EL + +  I+E ++ E++R
Sbjct: 301 GYVLRRLIRRAYRHGKLLGIEGEFLTNIIDKVIDTYKVEYEELAKNREKIKEIIKDEEDR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL  L+ ++S + ++  ++LNG+ AFKLYDT+G PLD+ ++IL  + L  +D 
Sbjct: 361 FQKTIDQGLERLEVLISDMEEENKDVLNGEEAFKLYDTYGFPLDLTKEILEEKNLK-VDE 419

Query: 416 ISFNQALEEQRSRARAHS-----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             FN+ +  Q+  AR          L +  T+ I          T F+GYD L       
Sbjct: 420 EVFNEQMNIQKQTARQARKKDAGWSLDNLNTDGI--------RKTDFVGYDDL------- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            V   +  I  + + V     G K  ++ D+T FYAE GG++ D
Sbjct: 465 ----------------DVDGEILNIFVENDQVSSINEGSKGIIISDKTSFYAEGGGEVAD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    ++ DVQ K + I+ H+  V  G +    +    +D   R  +  NHSAT
Sbjct: 509 TGFISSDNFEAKVMDVQ-KLKDIYFHYVEVISGKISINDTAKFKVDRDKRFDIQRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG  + Q GS +  + LRFD TH+K + + EL+ +ED VN+ IA+   V 
Sbjct: 568 HLLDQALRDVLGESIKQAGSLVDENKLRFDFTHNKALLTEELRQVEDIVNNEIAKQNFVK 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +++ + +   GA  L   KY D+VRVVS+     G +S  LCGG HV+ T +I++  I
Sbjct: 628 KEVVDYKKSQEMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V ESS+ AG+RRIEAITG++A   L   D+ +K++A+ L  +  N+  R++ I +E    
Sbjct: 683 VQESSVSAGVRRIEAITGRKAYELLQNSDKSIKTIANKLNTNVNNISNRIDSIEKEIENY 742

Query: 771 QLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +     R    N  D+      S   +  +N +          EL+   + ++    + I
Sbjct: 743 KS-EISRLKSTNSSDIISDLKNSVRNVKGINLLVKKFENASMDELREYENRIKNSFDNMI 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+   +S   K    + V + L+D+++A  + R  A+V  GG GGG+ + AQ+GG + +K
Sbjct: 802 IIFASVS--DKIVFTVSVDDKLVDKYDAGKIVREIAQVT-GGNGGGKKNFAQAGGKDISK 858

Query: 885 ADQAIAGVASFL 896
            D+A+  V   +
Sbjct: 859 LDEALNKVNEII 870


>gi|291563232|emb|CBL42048.1| alanyl-tRNA synthetase [butyrate-producing bacterium SS3/4]
          Length = 884

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 346/915 (37%), Positives = 524/915 (57%), Gaps = 59/915 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  AW+ LT+   +   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWAWEFLTECVGIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W +  G+  ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFRIWNEEIGIPKERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              P  + G   EG+R++E+WN+VF QF          L + +IDTGMGLER+A V Q+ 
Sbjct: 181 GTGPEDVMGG--EGDRFMEVWNVVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVCQDV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +D+D  + L+     +   +YE ++   V+ R+I DH++S +F+ +DGI+P+NEGRG
Sbjct: 239 ASLFDVDTNRALMDEVGALAHCRYEEDDKKDVSLRIIADHVKSCTFMASDGIMPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV RR++RRA  + R+LG     M  L   +       YPEL + K +I   +  E+ERF
Sbjct: 299 YVFRRLLRRAARHGRILGIEGNFMTKLAQVVIDLSKDGYPELEEKKDMILRVIDQEEERF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
             T+D+GL     +L+ L KD      ++L G+ AFKLYDT+G P+D+ ++IL  +GL  
Sbjct: 359 ANTIDKGLE----ILADLEKDMEAKGTKVLAGEDAFKLYDTYGFPIDLTKEILDDKGLT- 413

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++A++ QR  AR+          + I+  L      + F GYD L       ED
Sbjct: 414 VDEEGFHKAMQVQRETARSARKTTNYMGRDDIYQKLDASL-TSAFTGYDKL-------ED 465

Query: 473 RKVLCQKPPIDLTNGVSSIVK-AIVQQGE--IVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        + V+++V+ A  ++GE  I +    G+K  V+  +TPFY   GGQ+G
Sbjct: 466 E------------SKVTALVRLAADEEGEDEIADAVTDGEKACVITSETPFYGTMGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G       + ++ D      G   H   +  G+ +T  ++ L ++ +NR  +  NHSA
Sbjct: 514 DRGVIESANGKFEVEDTIHLQGGKIGHIGHMVSGMFQTGETVTLKVNEENRSLIGRNHSA 573

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL T+LG+HV Q GS +T D LRFD TH   ++  E+K +E+ VN  I   LPV
Sbjct: 574 THLLHKALRTVLGTHVEQAGSLVTRDRLRFDFTHFSAMSQDEIKEVENIVNKEIRAALPV 633

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           VT +M+ EDA  +GA AL G KY D+VRVV +     G  S+ LCGGTHV +T EI    
Sbjct: 634 VTDVMSLEDAKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVKNTSEISCFK 688

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+SE+ + AG+RRIEA+T      H    +++L + A+  K +  ++  ++E + EE + 
Sbjct: 689 ILSEAGVAAGVRRIEALTSDGLIHHYENVEQELHAAAAAAKSTPADLTTKIESMMEEIKT 748

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L   + K K +L  E +        ++  V  ++     VD   L+++ D L++K+  G+
Sbjct: 749 LHSENEKLKSKLAKEAMGDVMDQVQEVKGVKVLAVRADGVDMNGLRNLGDQLKEKLGEGV 808

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++  +  + K +++  VT++   +  +A +L +  A ++ GGGGGGRP+MAQ+GG    
Sbjct: 809 VVIASVL-DGKVNLMAAVTDEAQKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKKPE 866

Query: 884 KADQAIAGVASFLKK 898
               A+A VA  + +
Sbjct: 867 GVADALAKVAEVVSE 881


>gi|242310739|ref|ZP_04809894.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523137|gb|EEQ63003.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 859

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 331/891 (37%), Positives = 512/891 (57%), Gaps = 62/891 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           +R  FLEFF+  GH++  S  L+P +DP+L+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 12  VRALFLEFFESKGHKVYESMPLVP-DDPSLLFTNAGMVQFKDIFTGKIPIPNPNIATSAQ 70

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI  AW+ +T+     +  L
Sbjct: 71  LCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKDAIAYAWEFVTEVLGFSKEAL 130

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           Y+TV++ D+EAF+LW K   +   +I R+   DNFW M +TGPCGPCSEIF DQGE    
Sbjct: 131 YVTVHENDDEAFELWTK--HIDPSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGEENFN 188

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  +L+ K +N+
Sbjct: 189 GPEDYFGGDGDRFLEIWNLVFMQYERDISGNLKPLPKPSIDTGMGLERVMALLEGKKSNF 248

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  LI   EQ+ G KY   +  + RVI DH R+ +FL+A G+    EGRGYVLRRI
Sbjct: 249 DSSLFMPLIAKVEQIVGQKYIYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRRI 308

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG  +P +  ++ ++C  MG+ Y  L + +  I+   ++E+ERF +T++ 
Sbjct: 309 LRRAIRHGYLLGMRKPFVYEVIDSVCENMGNHYRYLREKQEAIKMQCKAEEERFFETIEN 368

Query: 365 GLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           G+ L +  L +L K+   ++ +G+VAF+LYDT+G PLD+ QD+L   G  G+D+ SF   
Sbjct: 369 GMNLFNKELENLKKEKPNQLFSGEVAFRLYDTYGFPLDLTQDMLRENGF-GVDMDSFEVC 427

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +++Q+ +A+A+  G G    E  + +L  K+G  +F+GY  ++                 
Sbjct: 428 MQKQKEQAKANWKGSGDNIKEGDFKTLISKFGENEFVGYTTMQ----------------- 470

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S + A++ +       + G+   V+ D+TPFY ++GG +GD G  +    ++
Sbjct: 471 ------FKSKISALLDENFKEVAKLQGEGY-VMLDKTPFYPQSGGPIGDKGVILDSNSKV 523

Query: 542 --QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D +K           +E  ++  E+   ++   Q R +++ +HSATHLLH AL  
Sbjct: 524 LAEVMDTRKYFGLNISQIKALESLVVGQEVVAQVS---QERLEIAKHHSATHLLHKALRE 580

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS +  + LRFD +H K ++  E++ IE  VN+ I  + P +   M+ + A
Sbjct: 581 VLGEHIAQAGSLVESNRLRFDFSHPKALSYEEIEKIEILVNEKICLSNPQICETMDIDSA 640

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA AL G KY   VRV++         S  LCGG HV +T  I   YI+ ES + +G
Sbjct: 641 KAKGAMALFGEKYGKNVRVITFG------DSIELCGGIHVENTANIGSFYIIKESGVSSG 694

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRK 778
           +RRIEA+ G+ A  +  G+    K+L    K  +       +E I ++  +++ + ++  
Sbjct: 695 VRRIEAVCGKAAYEY--GK----KALVEIAKAKEELKAQDLLEGIKKQKEQIKSLKSQST 748

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +   ++L   +I D+N +  II  VD  E+K+++D  + K +   I+L+    +  A V
Sbjct: 749 TKATTQNL---QIEDINGVCVIIQSVDDAEMKTLVDNAKNKYEKVAILLIDTQGKIVAGV 805

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                +       A    +  A+V+ GG GGGR   A +GG +  K  +A+
Sbjct: 806 KNATIK-------AGSWVKEVAQVM-GGNGGGRDDFATAGGKDTQKIKEAL 848


>gi|313893025|ref|ZP_07826602.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442378|gb|EFR60793.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 871

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 339/900 (37%), Positives = 503/900 (55%), Gaps = 59/900 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L + SLIP NDP+L+   +GM P K  FTG+  P  + +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDTFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QTCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+TVY +D+EA+  W K  G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHKDCGVEESHISRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           C  P   PG   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ  
Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             N++ DL   +I+A+ +  G+ Y    N  V+ +VI DH R+ + LI+DG+LP+NEGRG
Sbjct: 235 RTNFETDLIYPIIEATAKRAGVTYNENPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + RLLG     +  L+  +   +G     + + K  ++  +++E+ERF
Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLVDVVVEILGPGIKSIAEKKDFVKRVVQNEEERF 354

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID  
Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A++EQR RAR   +              ++   AT  I +  L+  + + ED  V 
Sbjct: 414 GFEAAMKEQRERAREARVK-------------EDAKVATPDITF--LKDEELL-EDESV- 456

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +S V  + +  + ++ A  G ++ ++   TPF+AE GGQLGDTG  +G
Sbjct: 457 -----------KASSVLMVGKGAKRLQTAADGDEITIIVRTTPFHAEGGGQLGDTGFIVG 505

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH A
Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVALEVDTNRRSAMARNHTATHLLHAA 565

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ + +   +    M+ 
Sbjct: 566 LKQILGDHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEVLKATDLAIAEMSM 625

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY D VRVV V        S  LCGG+HV +T  +    + SE+ I
Sbjct: 626 DEAKEKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFVGSFRLTSEAGI 680

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G+RRIEAITG+ A          ++ +A  LK     V  R+ ++  E ++   +L  
Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELEQ 740

Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830
            ++++              I DV F++  +      EL+ + D  L +   SG++++   
Sbjct: 741 IRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGAA 800

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + +  V++D++ +   A ++ + +A+V  GG GGGRP MAQ+GG    K  QA+
Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMQAL 859


>gi|260911261|ref|ZP_05917862.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634634|gb|EEX52723.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 873

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 333/906 (36%), Positives = 496/906 (54%), Gaps = 75/906 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH++  S+ ++  +DPTLMFTN+GM  +K+I  G   P  + 
Sbjct: 1   MMTANEIRESFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK  AI  AW+ L     L
Sbjct: 61  RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + + +Y+TV++         D+EA + W K   L AD II    +DNFW M ETGPCGPC
Sbjct: 121 NPQDIYVTVFEGSEEEGIARDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPC 178

Query: 173 SEIFFDQGECIPGG-LPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D         +PG+   +++  + IEIWN+VFMQF +++      LP   IDTGM
Sbjct: 179 SEIHLDSRSAKEKAEVPGANLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +IQ   +++G+KY  +  V+   RV+ DHLR+ +F I
Sbjct: 239 GFERLVRSLQGKTSNYDTDVFQPVIQEISRLSGLKYGTDEKVDVAMRVVADHLRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP N   GYV+RRI+RRA+ YA   LG     M  LLP    EMG AYPEL   + 
Sbjct: 299 ADGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E++ F +TL++G+ +L+  +  L  +   +L+G  AF+L+DT+G PLD+ + 
Sbjct: 359 LIGRVMKEEEDSFLRTLEKGISMLNDEMERLKAEGKTMLDGAQAFRLFDTYGFPLDLTE- 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           ++C      +D   F+  +++Q+ RAR       +      W  L+E  G   F+GYD  
Sbjct: 418 LICRENGLQVDAAQFDVEMQKQKERARN-----AAAVENSDWVVLRE--GEQTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +K                                E+V D TPFY E
Sbjct: 471 EYECHILRYRQVTQKK----------------------------NTYFELVLDYTPFYGE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G  +     + + D  K+     +H  IV+      E   +  +D   R   
Sbjct: 503 MGGQVGDCGVLVNGEETVDVIDT-KRENNQSIH--IVKALPKAPEADFMACVDTDKREAS 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL +AL  +LG HV Q GS + PD LRFD +H + +T  EL+ +E  VND+I
Sbjct: 560 AANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q+LP+   R    E+A A GA AL G KY D VRVV          S   CGG H  ST
Sbjct: 620 RQDLPLDEHRDTPVEEAKAMGAVALFGEKYGDTVRVVRFG------PSCEFCGGIHARST 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I +  IVSESS+ AGIRR+EA+TG+R    +   ++ L+ + +    ++ ++ G + +
Sbjct: 674 GRIGMFKIVSESSVAAGIRRVEALTGKRCEEAMYVLEDTLRGIRNLFNNAK-DLQGVIAK 732

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---DVNFMSHI--ISEVDSKELKSVMDALQ 817
             EE+  ++    K   Q  VE L    +A   DVN +  +  +  +++++ K+++  ++
Sbjct: 733 YMEEHDAMRKEIEKFSAQA-VERLKDSLVANAKDVNGLKVVKAVLPINAEQAKNLVFKVR 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875
           + I   ++ +VG +   K  + I+ ++D++     NA  + R +AK++  GGGGG+PH A
Sbjct: 792 EAIPQNLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLI-QGGGGGQPHYA 850

Query: 876 QSGGPN 881
            +GG N
Sbjct: 851 SAGGKN 856


>gi|330802829|ref|XP_003289415.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum]
 gi|325080498|gb|EGC34051.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum]
          Length = 925

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 366/934 (39%), Positives = 498/934 (53%), Gaps = 128/934 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FTG E+  Y+ VTT QK
Sbjct: 38  IREKFLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTGLEESKYKLVTTSQK 97

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRR 124
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY  FK  +IQ AW+LLTK+F L + R
Sbjct: 98  CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWNLLTKDFGLPKER 157

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGECI 183
           L I+V + DEE+  +W+   GLS DKI+ +   DNFWSM +  GPCGPCSEIF+D GE  
Sbjct: 158 LAISVLEGDEESASIWRDQIGLSNDKIMYLGKKDNFWSMGDGPGPCGPCSEIFWDHGE-- 215

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                G   +GER++EIWNLVFMQ+ +  K E   L    +DTGMGLERMATVLQ KT N
Sbjct: 216 -----GKEVDGERFLEIWNLVFMQYNRNEKGELEKLAMPCVDTGMGLERMATVLQGKTTN 270

Query: 244 YDIDLFKHLIQA-SEQVTGMKYEGNNIVN---------HRVIVDHLRSSSFLIADGILPA 293
           YDIDLF++LI +  EQV     + ++I+          +RVI+DHLRS SFLI+DG++P 
Sbjct: 271 YDIDLFQNLINSFKEQVMIDPTKASHIIKQDPQRVEVAYRVIIDHLRSISFLISDGVIPF 330

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GRGYVLR+I+RRA+ Y +LLG+  P +  L   L  EM   +P+L +    I+  L +
Sbjct: 331 NIGRGYVLRKIIRRALSYGKLLGFEGPFLYQLFSILEHEMADTFPQLRERSNEIKNVLLN 390

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+  F K + RG+  L+ ++   G+   LN D  F LY+T+GLPL+I  ++   +    I
Sbjct: 391 EETTFYKAIKRGIPYLEEMIDR-GQ---LNEDNLFLLYNTYGLPLEI-SEVKAKQNNIEI 445

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTE-------KIWFSLKEKYGATQFIGYDLLRGS 466
           D+      ++E R+++RA      S           K W   K    + +FIGY+     
Sbjct: 446 DMEKVANLVDETRNQSRATWKSNESQPNTNNPLDEVKKW---KNDNISPKFIGYET---- 498

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              N  S I K+                V + FD++PFY ++GG
Sbjct: 499 -----------------TLNDESLITKSFFDN--------DNHLVYLSFDKSPFYGKSGG 533

Query: 527 QLGDTG--------------------------CAIGDGIRLQITDVQKK-AEGIFVHHAI 559
           Q+GDTG                              D  +  IT+VQ   AEG  V  + 
Sbjct: 534 QIGDTGIIKSKNSNQIYNVIDTIKPYDNSLVLVVKWDPTKQLITNVQDDLAEGSIV-SSQ 592

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           VE+ +               R+Q +I+HSATHLLH AL  I+G  V Q GS + P+ LRF
Sbjct: 593 VEKSV---------------RKQTAIHHSATHLLHAALREIIGKSVVQAGSFVGPNILRF 637

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D TH K ++  E+  IE  VND+I Q++ + T  M   +A    A  L   KY D VRVV
Sbjct: 638 DFTHGKKLSVKEIDQIEKWVNDVIDQDIYLETHEMPYSEASKGDAIQLFSEKYTDLVRVV 697

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           S+        S  LCGGTHV  + +I    I+SESS+ AG RRIEAI G+ A        
Sbjct: 698 SIP-----GFSKELCGGTHVERSSDIHHFKIISESSVAAGTRRIEAIAGKVATEWFKSHY 752

Query: 740 EKLKSLASFLKVSQGNVVGRVE-----------EIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + ++S++  + V   N    +E           EI E   K+ L+ A      ++  + C
Sbjct: 753 KMVQSISDNINVPLTNFQPSIERLVSSNKQKEKEIEELNLKIALLSASSH-SGHICGVEC 811

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
               D     H++   DSK L  +  +  K   + I + V  SK+ KA   +   ++   
Sbjct: 812 GSGIDHPLSIHVVDCDDSKILNVIAGSFSKSNPNHINITV--SKKGKAICNLGANQEPNS 869

Query: 849 RFNAVD--LARLSAKVLGGGGGGGRPHMAQSGGP 880
                D  + +L + +  GG GGG   +A +  P
Sbjct: 870 LKTTADTIVKKLLSSLNCGGKGGGSKILANATIP 903


>gi|296271979|ref|YP_003654610.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096154|gb|ADG92104.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 850

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 351/908 (38%), Positives = 509/908 (56%), Gaps = 78/908 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +L+FF+  GHE++ S  L+P +DPTL+FTN+GMV FK+IFTG    P     T+ Q
Sbjct: 3   IRKEYLDFFKNKGHEVISSMPLVP-DDPTLLFTNAGMVQFKDIFTGAIPAPKNPTATSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +L
Sbjct: 62  LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFITVNLALPIDKL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180
           ++T+++ D+EAF +WKK   +   +I R    DNFW+M +TGPCGPCSEIF+DQG     
Sbjct: 122 WVTIHESDDEAFNIWKKY--IEPSRIKRFGDKDNFWAMGDTGPCGPCSEIFYDQGVENFG 179

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E   GG      EG+R++EIWNLVFMQ+EQ N   R  LPK SIDTGMGLER+  + +
Sbjct: 180 SDEDYLGG------EGDRFLEIWNLVFMQYEQSNGV-RTPLPKPSIDTGMGLERVIAIKE 232

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              NN+D   FK L+    ++   +     I ++RVI DHLR+ SF+++ GIL  NEGR 
Sbjct: 233 GVLNNFDSSNFKPLVNEVAKLAKKQPTKETIGSYRVIADHLRAVSFMLSQGILFGNEGRP 292

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV RRI+RRA+ +  LLG+ E  M  L+  L   MG  Y +L +    I+E +  E+ERF
Sbjct: 293 YVNRRILRRAVRHGYLLGFREAFMSKLVDVLIKIMGEHYTDLKEQASFIKEQIMLEEERF 352

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KT+  G+ L +  L +  K  + +G+VAFKLYDT+G PLD+ +D+L  + L  +DI +F
Sbjct: 353 FKTIASGMTLFNEELINTKK--LFSGEVAFKLYDTYGFPLDLTEDMLREKDLK-VDIETF 409

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ +  Q+++A+A   G G   +E  +  L EKYG  +F+GY                  
Sbjct: 410 DKLMNAQKAKAKAAWKGSGDEASEGDFKVLLEKYGVNEFVGY------------------ 451

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               + T+  S+IV  + ++   V+    GQ   ++ D+TPFYA +GGQ GD G A+ D 
Sbjct: 452 ----ENTSYKSTIVTLLDEKFNEVDSLEKGQTGWIMLDKTPFYATSGGQSGDIG-ALEDK 506

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + I +   K  GI +    VE   L  E   V+     NR +++ +HSATHLL  AL 
Sbjct: 507 QHIAIIEETSKFHGINLSKIKVETSSL--EKGEVVNAVVVNRYEIAKHHSATHLLQSALK 564

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG  VSQ GS      LRFD T+ K +T+ +++ ++D VN +I + L      +  E+
Sbjct: 565 MVLGDTVSQAGSLNNSSRLRFDFTYPKAMTNEQIEEVQDLVNSMITRGLKGSVEELPIEE 624

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA A+ G KY D VRVV+      G  S   CGGTHV +T +I   YI+ ES + A
Sbjct: 625 AKQRGAIAMFGEKYGDMVRVVNF-----GDVSVEFCGGTHVRNTLDIGSFYILKESGVSA 679

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G  A  +                    +++ ++ EI  E + + +I   +K
Sbjct: 680 GVRRIEAVCGSAAIKY------------------TNSIISKMNEIESEIKNVDVISGIKK 721

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           L+  ++ L    I   +  +  I+E    + K ++D ++      I+       EK A +
Sbjct: 722 LKEQIKTLKQEVIEAQSASTTPIAEEMIGDTKVIVDIVKNGDIKKIVDDAKNGNEKVAIL 781

Query: 839 LIVVTEDLL--------DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           LI   +D +            A +  +  A ++ GGGGGGRP  AQ+GG + +K D+A A
Sbjct: 782 LIQAKDDKVMLVAGSKNTNIKAGNWIKEIAPIV-GGGGGGRPDFAQAGGKDVSKVDEAKA 840

Query: 891 GVASFLKK 898
              ++ K+
Sbjct: 841 KALTYAKE 848


>gi|284032274|ref|YP_003382205.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283811567|gb|ADB33406.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 889

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 338/914 (36%), Positives = 514/914 (56%), Gaps = 64/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL++F+  GH ++PS+ L P  DP L+F  +GM  F   F GQ+ P Y   T+V
Sbjct: 4   SEIRRRFLQYFEDRGHTVVPSAPL-PSPDPNLLFNVAGMAQFVPYFVGQQTPPYPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFK++AI+ AWDL+TK      + 
Sbjct: 63  QKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKDQAIEYAWDLVTKPQSEGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D+  LY +VY ED+EA  +WK+++GL  D+I+R+   DNFWSM   GPCGPCSEI  D+
Sbjct: 119 FDESVLYASVYYEDDEAIDIWKRVAGLPDDRIVRLGMKDNFWSMGVPGPCGPCSEILIDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLERM 233
           G     G     E G+RY+E WNLVFMQ    E   K+   IL   P  +IDTG+GLER+
Sbjct: 179 GPEF--GADRDWEAGDRYLEFWNLVFMQNVRGEGGGKEGYPILGELPNKNIDTGLGLERV 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I+ + +++G KY  +++  V  RV+ DH+RS+  LI DG+ 
Sbjct: 237 AYLLQGVDNMYEIDEIFPVIERAAELSGRKYGVDHVDDVRFRVVADHVRSALMLIGDGVT 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NE  GYVLRR++RRA+   RLLGY +P ++ LLP    +M  +YPEL      I +  
Sbjct: 297 PGNEQGGYVLRRLLRRAVRSMRLLGYEDPSLVELLPTSLEQMKKSYPELETDFGRISQIA 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E++ F +TL  G  + D  + ++  +    L G  AF+L+DT+G P+D+  ++   +G
Sbjct: 357 YAEEDAFRRTLTAGTSIFDVAVKNVKAEGGARLAGAQAFQLHDTYGFPIDLTVEMAAEQG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           L  +D   F   + EQR RA+A +    LG   T   +  L+EK G T+F GY  L    
Sbjct: 417 LQ-VDTEGFRSLMTEQRERAKADARAKKLGHADTSG-YRELREK-GITEFTGYTEL---- 469

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S ++ ++++G + + A  G+ VEVV ++TPFYAE+GGQ
Sbjct: 470 -------------------ATDSQIRGVLREGAVAQAAEPGETVEVVLEKTPFYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG++LQ+ DVQ+  +G+ VH   V  G+++  + +   +D++ R +    H
Sbjct: 511 IADEGLIVADGVKLQVLDVQRPVKGLIVHKVKVLEGVVQPGLDVHAQVDHEWRVEACQAH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S TH++H AL  +LG    Q+GS   P  LR D   S  +  A    IE+  N  + Q+L
Sbjct: 571 SGTHVVHAALRQVLGPTALQSGSYNKPGYLRLDFAWSSALDQATRSEIEEVANLAVRQDL 630

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV  + M   +A   GA AL G  Y+++VRVV +    GG  S  LCGGTHV  + ++  
Sbjct: 631 PVSAQYMTLPEAREWGALALFGETYDEQVRVVEI----GGPWSRELCGGTHVKHSSQVGA 686

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           L + SESS+ AG+RR+EA  G  A   L  +   ++ L+  LK     +  +V ++ E  
Sbjct: 687 LTVTSESSVGAGVRRLEAFVGLEALRFLGRERSLVRLLSENLKTRPEELPAKVADLAERL 746

Query: 768 R----KLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISE-VDSKELKSVMDALQKKI- 820
           R    +L+ + A + +    E  +  K +  V ++ H   + V+  +L+ +   ++ ++ 
Sbjct: 747 RAAEKELEKVRASQVMAAAGELAASPKDVFGVAYVGHRAPDGVNGGDLRKLALDVRGRMP 806

Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +  ++ LVG++  K A V+ +       R  A DL R++A+ L GG GGG+  +AQ G
Sbjct: 807 ADKPAVVALVGVNDGKPAVVVALNDTAREWRLKAGDLVRVAAEQL-GGRGGGKDDVAQGG 865

Query: 879 GPNGNKADQAIAGV 892
           G +   AD+A++ V
Sbjct: 866 GTDPAGADKALSAV 879


>gi|84496692|ref|ZP_00995546.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383460|gb|EAP99341.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 897

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/929 (37%), Positives = 511/929 (55%), Gaps = 83/929 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L FF+KNGH ++PS+ LI  +DP L+F N+GMVPFK  F+GQE P ++  T+
Sbjct: 3   TAEIRRRWLAFFEKNGHTVVPSAPLI-HDDPNLLFVNAGMVPFKPYFSGQETPPWERATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFK+ AI+ AW LLT   D    
Sbjct: 62  VQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKKDAIRFAWQLLTTSQDEGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL+ TVY++D+EA +LW + + +  D+I+R    DN+W M   GP GPCSEIF+D
Sbjct: 118 GLDPDRLWATVYEDDDEAERLWAEYTSIPLDRIVRRGKLDNYWHMGVPGPGGPCSEIFYD 177

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGL 230
           +GE   + GG P   E+  RY+EIWNLVFMQ E  Q   ++ F     LP  +IDTGMGL
Sbjct: 178 RGEEYGVEGG-PAVDED--RYMEIWNLVFMQEELSQVRAKDDFDIEGPLPAQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ER+A+VLQ   N Y+ID    ++  + ++TG  Y  N          + V  RV+ DH+R
Sbjct: 235 ERIASVLQGVDNLYEIDEVYPVLAKAAEMTGKSYGANSGHSAQGSHPDDVRLRVVADHIR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P NEGRGYVLRR++RRA+   RLLG+ +P + HLLP     M  +YPEL
Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRSMRLLGFEDPALPHLLPISMERMKQSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPL 398
                 I +   +E+E F +TL  G  +LD  +S   +     L GD AF+L+DT+G P+
Sbjct: 355 ETGFERISKIAYAEEEAFRRTLASGTTILDTAVSRTKESGGTTLAGDQAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQF 457
           D+  ++    GL  +D   F + + EQR+RA+A +    SG    ++W  L+   G T F
Sbjct: 415 DLTLEMAEEHGLT-VDREGFTRLMLEQRNRAKADAKSKKSGHANTEVWKELRTS-GETDF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                 R  + +  + KV+                  +V  G  VEE   GQ+ +VV D+
Sbjct: 473 ------RAWQELTSEAKVV-----------------GLVVDGVRVEEIEPGQQGQVVLDR 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE+GGQ+ D G    DG+ L++ DVQ+  +G+  H   V  G LR   +++  +D 
Sbjct: 510 TPFYAESGGQIADEGIITADGVHLKVMDVQRPVKGLIAHTVEVVHGPLRAGSAVLAEVDP 569

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R      HS TH++H AL  +LG    Q+GS   P  LR D    + ++      IE+
Sbjct: 570 EWRISACQAHSGTHVIHAALRQVLGPSALQSGSYNKPGYLRLDFAWGQALSPETRSEIEE 629

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  + ++LPV  + M+   A  +GA AL G  Y + VRVV +    GG  S  LCGGT
Sbjct: 630 VANLAVRKDLPVSAQWMSLAQAREAGALALFGETYGEDVRVVEI----GGPWSRELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  + ++  L +  ESS+ +G+RR+EA  G  A  +L  +   +  L+  +    G + 
Sbjct: 686 HVGHSSQVGALTVTGESSVGSGVRRLEAFVGMDALRYLARERAIVAELSGIVGAQPGELT 745

Query: 758 GRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-SEVDS 806
            RV          E   E  RK  ++ A   L  N +D     +  V F+ H    E  +
Sbjct: 746 ERVGAMVARLKDAERELERTRKQAVLAAAGSLSDNAKD-----VGGVRFVGHDAGGEAGA 800

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVL 863
            ++++++   ++K+      +V ++   K   ++V+  +   R     A +L R++A+ L
Sbjct: 801 DDVRAMVLDARQKLGDAAPSVVAVTGGAKGRPVVVIATNQAARDKGIKAGELVRIAAQTL 860

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            GGGGGG+  +AQ GG +  K+ +AI  V
Sbjct: 861 -GGGGGGKDDIAQGGGQDIAKSGEAINAV 888


>gi|160886801|ref|ZP_02067804.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483]
 gi|156107212|gb|EDO08957.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483]
          Length = 872

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/927 (37%), Positives = 511/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN+ +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPDHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  E+A   GA AL G KY DRVRV+    S+E+          CG
Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754
           GTHV++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F      
Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAPDL 726

Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +  R        +++  E++ K +    K +L  N++++  H I  V F + + +EV  
Sbjct: 727 GIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +    A+  V
Sbjct: 840 GGGGGQPHFATAGGKNTDGLPAAVEKV 866


>gi|237719250|ref|ZP_04549731.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293372256|ref|ZP_06618641.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|229451629|gb|EEO57420.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292632698|gb|EFF51291.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
          Length = 872

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/927 (37%), Positives = 511/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN+ +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  E+A   GA AL G KY DRVRV+    S+E+          CG
Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754
           GTHV++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F      
Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726

Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +  R        +++  E++ K +    K +L  N++++  H I  V F + + +EV  
Sbjct: 727 GIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +    A+  V
Sbjct: 840 GGGGGQPHFATAGGKNTDGLPAAVEKV 866


>gi|291276861|ref|YP_003516633.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964055|emb|CBG39895.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 850

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 331/895 (36%), Positives = 508/895 (56%), Gaps = 53/895 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FFQ  GH++  S  L+P  D +L+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 4   IRKKFLDFFQSKGHQVYASMPLVP-EDASLLFTNAGMVQFKDIFTGKIPTPSIPRATSSQ 62

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  L
Sbjct: 63  LCIRAGGKHNDLENVGFTRRHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTEVLGFDKEVL 122

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI++++ D+EAF++W K   ++ D+I R+   DNFW M +TG CGPCSEIF DQG     
Sbjct: 123 YISIHESDDEAFEIWSKY--VNPDRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGSSFAS 180

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                  +G+R++EIWNLVFMQ+E+++      LPK SIDTGMGLER++ +L+ K +N+D
Sbjct: 181 SEDYFGGDGDRFLEIWNLVFMQYERKSDGTLIPLPKPSIDTGMGLERVSALLEGKESNFD 240

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             LF  LI+  E++ G  Y   +  ++RVI DH R+ +FL+A G     EGRGYVLRRI+
Sbjct: 241 SHLFMPLIKEVEKLCGKPYHYESGASYRVIADHARAVAFLLAQGSNFDKEGRGYVLRRIL 300

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ +  LLG+       ++  +C EMG  Y  L++ K  I    + E+ERF +T+++G
Sbjct: 301 RRAVRHGYLLGFEGAFFYRIVEKVCEEMGGFYTYLLEQKNFISMQTKMEEERFFETIEQG 360

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           + L    L  + +  +++ +G++AF+LYDT G PLD+ QD+L    L  +D+  F  +++
Sbjct: 361 IHLFKKELERMREMGEKVFDGNIAFRLYDTFGFPLDLTQDMLKEENLE-LDLAGFESSMQ 419

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +Q+  A++   G G    +  +  + +++G+  F GY   R         K+L       
Sbjct: 420 KQKQLAKSSWKGSGDPLIKGDFKQVLQEFGSNIFNGYTHDR------HHSKIL------- 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 ++    +++ EI++     ++  ++ D TP Y E+GG +GD G  + +G  +  
Sbjct: 467 ------ALFDENLERQEILQ-----KEGYILLDTTPLYPESGGAIGDRGVLLENGECIAK 515

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               KK  G+ +     ++ +   E+  VL +D+ +R++++ +HSATHLLH  L    GS
Sbjct: 516 ILDTKKYFGLNISQISPKKPLKVGEIYEVL-VDH-SRQEIAKHHSATHLLHAILREKFGS 573

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
            V+Q GS +  + LRFD +  +PIT  EL  I+D+VN +IA+NLP     M    A   G
Sbjct: 574 QVAQAGSLVEANRLRFDFSFPRPITKEELLEIQDSVNALIAKNLPARVEHMEIGQAKTRG 633

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVVS      G  S  LCGG HV +TG I   YI  E+ + +G+RRI
Sbjct: 634 AIALFGEKYGENVRVVSF-----GEESCELCGGIHVQNTGFIGNFYITKENGVSSGVRRI 688

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G     H        + +   LK +Q  ++G V ++ E+ + L+     ++LQ   
Sbjct: 689 EAVCGNAGYLHAKESLLHNQQIKEILK-NQDMMLG-VAKLKEKIKTLE-----KQLQNPK 741

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           +D S  ++  +N +S I+   +S E+K ++D  +       I+L+    EK    L +  
Sbjct: 742 KDTSL-QVQQINGISLIVQITESTEIKKLIDEAKNHYDKVAILLI---NEKN---LAIAA 794

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   A D  + +A++L GG GGGR   A +GG   +K   A+     + K+
Sbjct: 795 GSKNTNIKADDWVKKTAQIL-GGNGGGRDDFATAGGKEHSKIKAALQSAILYAKE 848


>gi|295839933|ref|ZP_06826866.1| alanine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827712|gb|EDY43697.2| alanine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 866

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 337/895 (37%), Positives = 503/895 (56%), Gaps = 81/895 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     T+V
Sbjct: 4   AEIRRRWLRFFEERGHKVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT       F 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + K +  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + +I  + ++TG+ Y     + V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVRNMYETDTLRVVIDKATELTGVAYGAAVASDVSLRVVSDHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  +E   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRVETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  ++        +L G+ AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGEKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G   
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG--- 473

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             E R V        L +GV +              A  G +VEVV D+TPFYAE GGQ+
Sbjct: 474 --EARIVGL------LVDGVPA------------PAASEGDEVEVVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++  H
Sbjct: 514 GDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQTRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++++ +
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLSREM 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVSQLQELVK-------GRPEELPEKI 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812
                      ++++   A++ LQ      +  K  DV+  + +  +V     + +L+ +
Sbjct: 742 SGMLGKLKDAEKEIERFRAEKVLQAAAGLAAGAK--DVHGTALVTGQVPDGTGADDLRRL 799

Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863
           +  ++ +I   +  ++ L  ++  +  +V +   E   +R F A DL R +AK L
Sbjct: 800 VLDVRGRIPGDRPAVVALFAVTGGRPVTV-VATNEAARERGFKAGDLVRTAAKAL 853


>gi|119716634|ref|YP_923599.1| alanyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|205830163|sp|A1SJC7|SYA_NOCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119537295|gb|ABL81912.1| alanyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 896

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 343/918 (37%), Positives = 518/918 (56%), Gaps = 67/918 (7%)

Query: 3   NVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           + + IR  F+  F+ N     H  +PS+SL+  +DP L+F N+GMVPFK  F GQE P Y
Sbjct: 2   DTAEIRRRFVAHFEHNTTVGAHTPVPSASLL-LDDPNLLFVNAGMVPFKPYFLGQEAPPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
              T+VQKCVR      D+++VG+T RH TFFEM GNFSFG YFKE AI+LAWDL+T+  
Sbjct: 61  PRATSVQKCVRT----PDIEDVGKTTRHGTFFEMCGNFSFGDYFKEGAIELAWDLVTRPL 116

Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
               + L++ +LY +VY++D EA  LWKK++GL  ++IIR+   +N+WSM   GP GPCS
Sbjct: 117 ADGGWGLEESKLYPSVYEDDPEAVALWKKVTGLPEERIIRLGKRENYWSMGVPGPGGPCS 176

Query: 174 EIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERF----ILPKMSIDT 226
           EI +D+G +  P G  G   E +RY+EIWNLVFMQ E      +E F     LPK +IDT
Sbjct: 177 EILYDRGPDYGPDGDFGPKGE-DRYLEIWNLVFMQDELSAVRSKEDFDIAGSLPKKNIDT 235

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLER+A +LQ K N Y+ID+   +IQ +E++TG +Y  + ++ V  RV+ DH+RSS  
Sbjct: 236 GMGLERVAFLLQGKANMYEIDVMFPVIQKAEELTGRRYGADHDDDVRFRVVADHVRSSMM 295

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NE RGYVLRR++RRA+   RLLGY +P +  L P    +MG  Y  L +  
Sbjct: 296 LIGDGVTPGNEARGYVLRRLLRRAVRSMRLLGYEDPALPELFPISRDKMGETYTALHRDW 355

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I     +E+  F +TL  G  + D   + L +     L+GD AF L+DT+G P+D+  
Sbjct: 356 ERISTVAYAEEHAFRQTLRSGTTIFDQATAELKQAGGSQLSGDKAFALHDTYGFPIDLTL 415

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYG-ATQFIGY 460
           ++   +GLA +D + F + + EQR RA+  +    G       +  + +  G   +F GY
Sbjct: 416 EMAAEQGLA-VDEVGFRRLMNEQRQRAKDDAKAKKGQHRDASAYRQVADSLGRPVEFTGY 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D++                     T+  S  V+ +V  G +V  A  G  VE++ D+TPF
Sbjct: 475 DVV---------------------TDEAS--VRGLVAAGGVVSSAGPGDDVEIILDRTPF 511

Query: 521 YAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQL D G   + +G R+++ DVQ    G+ VHHA V  G +   +     +D + 
Sbjct: 512 YAEGGGQLADQGVIELDNGARVEVRDVQSPVRGLIVHHATVLSGEVSIGLGAHALVDVER 571

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR +S +H+ATH++H A    LG   +Q GS  +P   RFD +    +  + +  +E  V
Sbjct: 572 RRSISRSHTATHMVHKAFREALGETATQAGSENSPGRFRFDFSAVGAVPESVMADVEARV 631

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+++  +L V   +M++ DA+ SGA AL G KY DRVRVVSV     G  +  LCGGTH 
Sbjct: 632 NEVVLDDLAVHAEVMSQADAVKSGAMALFGEKYGDRVRVVSV-----GDWARELCGGTHA 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            S+G++ ++ ++ ESSI +G+RR+EA+ G  A   L  +   +  L+  LKV    +  R
Sbjct: 687 GSSGKLGVVKLLGESSIGSGVRRVEALVGSDAYRFLAREHVLVAQLSDTLKVRPEQLPER 746

Query: 760 VEEIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           V ++ E+ R+ +     +   +             K+  VN ++H        +++++  
Sbjct: 747 VHDLVEKLREAEKEIERVRVGQLLAAAGELAAGAAKVGPVNLVAHRADGAGGGDVRTLAL 806

Query: 815 ALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            ++ ++   + G+++++G    K A V  +  E      +A +L R +   L GG GGG+
Sbjct: 807 DVRGRLPQGEPGVVVVIGAVDGKVAVVAALNDEARARGLSANELVR-AVGPLVGGKGGGK 865

Query: 872 PHMAQSGGPNGNKADQAI 889
             +AQ GG + ++ D+AI
Sbjct: 866 DDVAQGGGTDASRIDEAI 883


>gi|227891107|ref|ZP_04008912.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227866981|gb|EEJ74402.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 917

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 346/931 (37%), Positives = 526/931 (56%), Gaps = 84/931 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 38  MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 97

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT   
Sbjct: 98  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 153

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIF
Sbjct: 154 WFDMDKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 209

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           FD+G+ +       P   PG   E ERY+EIWN+VF +F  +       LP  +IDTGMG
Sbjct: 210 FDRGQEMNNLPEDDPESYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 267

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286
           LER+ +V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F I
Sbjct: 268 LERVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAI 327

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    
Sbjct: 328 GDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEF 387

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++ 
Sbjct: 388 IEKVIKMEEDRFNDTLKEGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEY 447

Query: 405 LCARGLAGIDIISFNQALEEQR-----SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
               GL  +D   FN+ +E+Q+     +R+ A S+G+ +G        L +    ++++G
Sbjct: 448 ANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL-------LTDITTPSEYVG 499

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L+                     NGV   +K I+   E+V+   +  + +V+FD+TP
Sbjct: 500 YHELKA--------------------NGV---LKDIIIDNELVDTVPADSRAQVIFDKTP 536

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G        +  ++ DVQ    G  +H   V + + R E +  L +D 
Sbjct: 537 FYAEMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHVLKEMTR-ENTYSLEVDV 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
               ++  NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED
Sbjct: 596 AFHNKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIED 655

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I +N+ V T + ++E A   GA AL G KY D VRVV V     G +S   CGGT
Sbjct: 656 IVNAKIWENIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGT 710

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV++T EI L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK+ Q   V
Sbjct: 711 HVANTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEV 770

Query: 758 GR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVD---SKEL 809
            R +E++ E+ + L+    K+ L+              + ++N  + I  +V+     +L
Sbjct: 771 PRKIEQLQEQVKLLE--QQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQL 828

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGG 867
           + + D  ++K  S +++L   + + K +++  ++ D +   + A DL + ++ KV   GG
Sbjct: 829 RQLADQWKEKQLSDVLVLATATADGKVNLITAISGDAVKEGYKAGDLIKAIAPKVG--GG 886

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGRP +AQ+GG       +A+     +L K
Sbjct: 887 GGGRPDLAQAGGKKPEGIQEALKAAEDWLNK 917


>gi|42518570|ref|NP_964500.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|48428507|sp|P61702|SYA_LACJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41582855|gb|AAS08466.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 882

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465
             ID   F++ ++ Q+ RAR     L S G+ +    ++K+K    YG            
Sbjct: 418 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              ++E    L                  IV   ++V++A  G+   ++FD+TPFYAE G
Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505

Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581
           GQ+ D G  +     L  ++TDVQ       +H   V   IL  E     VL +D + RR
Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+
Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T + + +  +  GA AL G KY D VRVV ++       S+  CGGTH  +
Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760
           T +I +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K ++  +VV ++
Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814
             I ++ R  Q    + K Q+N     DL  + I  V  ++ I ++ D +   +L+ + D
Sbjct: 738 SSIEDDLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAAQADVEGMNDLRELAD 796

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +S +++L      K   V+ +  + +     A DL + +A +  GGGGGGRP+M
Sbjct: 797 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ+GG N      AIA V
Sbjct: 856 AQAGGKNPAGLKDAIAKV 873


>gi|320011910|gb|ADW06760.1| alanyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 889

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 350/923 (37%), Positives = 513/923 (55%), Gaps = 80/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW  LT       F 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIEFAWAALTNSVEEGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY +D+EA ++W++  G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + +E F     LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSQNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + ++  + ++TG++Y  +  + V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGADQGSDVSLRVVADHVRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLMGATGPVVRDLVDVVVDTMGQQYPELITDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F K L  G  +LD  ++       ++L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + ++ G T+F GY  + G   
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADRSGVTEFTGYASIEG--- 473

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
              + K++       L +GV S              A  G +VEVV D+TPFYAE GGQL
Sbjct: 474 ---ESKIVGL-----LVDGVPSPA------------ATEGDEVEVVLDRTPFYAEGGGQL 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G   +  G  +Q+ DVQ+   G+ VH   V+ G +    S    ID   RR ++  H
Sbjct: 514 ADQGRIKLDSGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDNTRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++++ L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLSREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLK-------GRPEELPEKI 741

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKSV 812
               ++   +  +  +E     K+            DV  ++ +  +V     + +L+ +
Sbjct: 742 SG--MLGKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGVALVTGQVPDGTTADDLRKL 799

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +  ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGG
Sbjct: 800 VLDVRGRIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+P +AQ GG N +    A+A V
Sbjct: 859 GKPDVAQGGGQNPDAIGDAVAAV 881


>gi|302345784|ref|YP_003814137.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302149231|gb|ADK95493.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 887

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 338/935 (36%), Positives = 510/935 (54%), Gaps = 94/935 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  T 
Sbjct: 3   ANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRRTD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L     LD
Sbjct: 63  SQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVLHLD 122

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCGPCS
Sbjct: 123 PKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGPCS 180

Query: 174 EIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDTGMG
Sbjct: 181 EIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTGMG 240

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVNHRV 274
            ER+  ++Q K +NYD D+F  +I   E+++G KY     EG+N           +  RV
Sbjct: 241 FERLVRLMQGKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAMRV 300

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333
           + DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L  EM
Sbjct: 301 VADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVREM 360

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390
           G+AYPEL   + LI   ++ E++ F +TL++G++LL+G +  L   G+ + L+G  AF+L
Sbjct: 361 GTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQ-LDGKEAFRL 419

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + ++CA     +D   FN+ +E+Q++RAR ++  + +G     W  L+E
Sbjct: 420 FDTYGFPLDLTE-LICAENGYTVDEKQFNEEMEQQKARAR-NAAAVENGD----WEVLRE 473

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 474 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 503

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   + + D  K+     VH  IV+      E  
Sbjct: 504 YELVLDYTPFYGEMGGQVGDQGVLVSEDETINVIDT-KRENNQSVH--IVKELPKNLEAD 560

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT  
Sbjct: 561 FMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITDE 620

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV          
Sbjct: 621 ELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFG------P 674

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748
           S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L S  
Sbjct: 675 SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKSMF 734

Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
                LK      V   + I +E    +     R  +  VE      +  V+ +  ++  
Sbjct: 735 NNAKDLKAVLTKFVEENDSIKKELESFRAQAVSRAAKNMVE--HAETVNGVHIVKTVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861
           +D    K ++  +++ +   ++ ++G   E +  + I++++D++  +  NA  + R +AK
Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYDLNAGKIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++  GGGGG+PH AQ+GG N +    A+  V   +
Sbjct: 852 LI-QGGGGGQPHYAQAGGKNADGIRSAVDKVIELI 885


>gi|299148308|ref|ZP_07041370.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|298513069|gb|EFI36956.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 872

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/927 (37%), Positives = 511/927 (55%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN+ +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPDHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695
             I  N+P+   R +  E+A   GA AL G KY DRVRV+    S+E+          CG
Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754
           GTHV++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F      
Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726

Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +  R        +++  E++ K +    K +L  N++++  H I  V F + + +EV  
Sbjct: 727 GIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +    A+  V
Sbjct: 840 GGGGGQPHFATAGGKNTDGLPAAVEKV 866


>gi|268318981|ref|YP_003292637.1| hypothetical protein FI9785_490 [Lactobacillus johnsonii FI9785]
 gi|262397356|emb|CAX66370.1| alaS [Lactobacillus johnsonii FI9785]
          Length = 882

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 348/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGQCLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465
             ID   F++ ++ Q+ RAR     L S G+ +    ++K+K    YG            
Sbjct: 418 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              ++E    L                  IV   ++V++A  G+   ++FD+TPFYAE G
Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505

Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581
           GQ+ D G  +     L  ++TDVQ       +H   V   IL  E     VL +D + RR
Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+
Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T + + +  +  GA AL G KY D VRVV ++       S+  CGGTH  +
Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760
           T +I +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K ++  +VV ++
Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814
             I ++ R  Q    + K Q+N     DL  + I  V  ++ I ++ D +   +L+ + D
Sbjct: 738 SSIEDDLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAAQADVEGMNDLRELAD 796

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +S +++L      K   V+ +  + +     A DL + +A +  GGGGGGRP+M
Sbjct: 797 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ+GG N      AIA V
Sbjct: 856 AQAGGKNPAGLKDAIAKV 873


>gi|288927362|ref|ZP_06421209.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330196|gb|EFC68780.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 872

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 333/903 (36%), Positives = 494/903 (54%), Gaps = 75/903 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR +F +FF+  GH++  S+ ++  +DPTLMFTN+GM  +K+I  G   P  +    
Sbjct: 3   ANEIRDSFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRRAD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK  AI  AW+ L     L+ +
Sbjct: 63  SQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHLNPQ 122

Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            LY+TV++         D+EA + W K   L AD II    +DNFW M ETGPCGPCSEI
Sbjct: 123 DLYVTVFEGSEEEGIPRDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPCSEI 180

Query: 176 FFDQGECIPGG-LPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
             D         +PG+S   ++  + IEIWN+VFMQF +++      LP   IDTGMG E
Sbjct: 181 HLDSRSAKEKAEVPGASLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+   LQ KT+NYD D+F+ +IQ   Q++G+KY  +  V+   RVI DHLR+ +F IADG
Sbjct: 241 RLVRSLQGKTSNYDTDVFQPVIQEISQLSGLKYGEDEKVDVAMRVIADHLRAVAFSIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP N   GYV+RRI+RRA+ YA   LG     M  LLP    EMG AYPEL   + LI 
Sbjct: 301 QLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQRELIG 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
             ++ E++ F +TL++G+ +L+  +  L  +    L+G  AF+L+DT+G PLD+ + ++C
Sbjct: 361 RVMKEEEDAFLRTLEKGISMLNDEMERLKAEGKTTLDGTQAFRLFDTYGFPLDLTE-LIC 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D   F+  +++Q+ RAR       +      W  L+E  G   F+GYD     
Sbjct: 420 RENGLQVDAAQFDVEMQKQKERARN-----AAAVENSDWVVLRE--GEQNFVGYDYTEYE 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   R+V  +K                                E+V D TPFY E GG
Sbjct: 473 CRILRYRQVTQKK----------------------------NTYFELVLDNTPFYGEMGG 504

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G  +     + I D  K+     +H  IV+      +   +  +D   R   + N
Sbjct: 505 QVGDCGVLVNGEETVDIIDT-KRENNQSIH--IVKALPKDPKADFMACVDTDKREASAAN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL +AL  +LG HV Q GS + PD LRFD +H + +T  EL+ +E  VND+I Q+
Sbjct: 562 HTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLIRQD 621

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           LP+   R    E+A A GA AL G KY D VRVV          S   CGG H  STG I
Sbjct: 622 LPLDEHRNTPLEEAKAMGAVALFGEKYGDTVRVVRFG------PSCEFCGGIHARSTGRI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +  IVSESS+ +G+RR+EA+TG+R    +   ++ ++ + +    ++ ++ G + +  E
Sbjct: 676 GMFKIVSESSVASGVRRVEALTGKRCEEAMYALEDTIRGIRNLFNNAK-DLQGVIAKYME 734

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIA---DVNFMSHI--ISEVDSKELKSVMDALQKKI 820
           E+  ++    K   Q  VE L    +A   DVN +  +  +  +++++ K+++  +++ I
Sbjct: 735 EHDAMRKEIEKFSAQA-VERLKDSLVANAKDVNGLKVVKAVLPINAEQAKNLVFKVREAI 793

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              ++ +VG +   K  + I+ ++D++     NA  + R +AK++  GGGGG+PH A +G
Sbjct: 794 PQHLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLI-QGGGGGQPHYASAG 852

Query: 879 GPN 881
           G N
Sbjct: 853 GKN 855


>gi|288871667|ref|ZP_06118467.2| alanine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288862560|gb|EFC94858.1| alanine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 813

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 326/847 (38%), Positives = 482/847 (56%), Gaps = 48/847 (5%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R 
Sbjct: 2   FLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  RLY +VY
Sbjct: 62  G----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIRWSWEFLTEVVGLDPDRLYPSVY 117

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
            ED+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G PG 
Sbjct: 118 LEDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPGC 176

Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
           +   E +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  + +D+D 
Sbjct: 177 TVGCECDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVVVQDVDSIFDVDT 236

Query: 249 FKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
            K L+    ++   +Y+ +  V+   R+I DH+RS +F+I+DGI+P+NEGRGYVLRR++R
Sbjct: 237 IKALLNRVAELARTEYQKDASVDVSLRLITDHVRSCTFMISDGIMPSNEGRGYVLRRLLR 296

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RA  + RLLG     +  L   +       YPEL + K +I + L  E+++F +T+D+GL
Sbjct: 297 RAARHGRLLGIEGRFLAELSRTVIELSKDGYPELEEKKAMILKVLTEEEDKFNRTIDQGL 356

Query: 367 VLLDGV---LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            +L  +   +S  GK  +L+G+ AFKLYDT+G PLD+ ++IL  +  + ID   F +A++
Sbjct: 357 AILSEMEEQMSAAGKT-VLSGEDAFKLYDTYGFPLDLTREILEEKHFS-IDEDGFKKAMQ 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR +ARA          +   +   +    T+F+GYD            +++C      
Sbjct: 415 EQREKARAARKTTNYMGADVTVYQSIDPALTTEFVGYD------------RLVC------ 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S + A+  + ++VE    G+   +V ++T FY   GGQ GD G  +       +
Sbjct: 457 -----DSKITALTTETDLVEALTDGETGTIVTEETCFYGTMGGQQGDKGVIVSANGEFSV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D      G   H   +++G+ +    + L +  ++R     NHSATHLL  AL T+LG 
Sbjct: 512 EDTIHLQGGKVGHVGKMKKGMFQIGDVVTLKVCEESRMNTGKNHSATHLLQKALRTVLGE 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +  D LRFD TH   +T  E+K +E  VN+ I + L V T +M+ ++A  SG
Sbjct: 572 HVEQAGSYVDEDRLRFDFTHFSAMTPEEIKKVECLVNEKIKEALNVKTEVMSLDEAKKSG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVV +     G  S+ LCGGTH+S+TG I    I+SE+ I AG+RRI
Sbjct: 632 AMALFGEKYGENVRVVKM-----GDFSTELCGGTHISNTGVIGSFKILSETGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     +    + +L   A   K +   +  R+E + EE + L   + K K +L  
Sbjct: 687 EALTGDGLMKYYQEAETELHEAAKAAKATPQTLAARIEAMLEEIKTLHSENEKLKSRLAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        +I  V  ++    +VD   L+++ D L+ K+  G+I+L  +  + K ++
Sbjct: 747 DSLGDVMDQVKEIGGVKVLAAKADDVDMNGLRNLGDQLKDKLGEGVIVLASVL-DGKVNL 805

Query: 839 LIVVTED 845
           +   TE+
Sbjct: 806 MATATEE 812


>gi|17229910|ref|NP_486458.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|20532251|sp|Q8YUD4|SYA_ANASP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17131510|dbj|BAB74117.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 880

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 350/910 (38%), Positives = 521/910 (57%), Gaps = 61/910 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IRT FL+F+ + GH++L S+SL+P  DPT++ T +GM+PFK IF GQ  P ++  TT 
Sbjct: 11  NEIRTRFLDFYAQRGHQILASASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFKE+AI   W++ T+ F L + R
Sbjct: 70  QKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V++ED+EA+ +W+   G++  +I R+  +DNFW    TGPCGPCSEI++D      
Sbjct: 126 LVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYD-FHPER 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLER+  +LQ   NNY
Sbjct: 185 GDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + ++ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGYVL
Sbjct: 245 ETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G +   +  +         SAYP + Q + +I+  L  E+  F KT
Sbjct: 305 RRLIRRVVRHGRLIGISGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFLKT 364

Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           LDRG  LL  +++ + K    +++G  AF LYDTHG PL++ Q+I     L  +D+  F 
Sbjct: 365 LDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGFPLELTQEIAEENNLT-VDVEGFQ 423

Query: 420 QALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + +E Q+   R AH ++ L   T +     L E   AT+FIGY            +    
Sbjct: 424 KQMEIQQQGGRGAHETIDL---TVQGSLDKLAEHIHATEFIGY-----------SQATAT 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
            K  + L +GV            + EEA +G +V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 470 AKVEVLLVDGV------------VQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           GI +Q+ DV+K+++  FVH   +ERG LR   ++   ID   RR+   NH+ATHLL  AL
Sbjct: 518 GIVVQVEDVKKESD-FFVHFGRIERGTLRVGDNVTAQIDRAGRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            TI+   +SQ GS ++ D LRFD    + +T  E++ +E+ +N  IA+       ++   
Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+       GV S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFP----GV-SMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--------- 768
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R         
Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           K QL  AK    L   D +C    D   +   +  VD + LKS  + L +KI +G ++L 
Sbjct: 752 KGQLAIAKSDSLLQTAD-TC---GDYKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLG 807

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            + +  K S++   + ++  +   A       AK+  GGGGGGRP++AQ+GG + +K   
Sbjct: 808 SVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIAKIC-GGGGGGRPNLAQAGGRDASKLPA 866

Query: 888 AIAGVASFLK 897
           A+    S LK
Sbjct: 867 ALEQAQSELK 876


>gi|260663392|ref|ZP_05864283.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260552244|gb|EEX25296.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 882

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 330/922 (35%), Positives = 506/922 (54%), Gaps = 77/922 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT +  F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D ++     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           + +       P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEMNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+  E  +  K  G N    V  ++I DH+RS +F I DG 
Sbjct: 238 VSIFENAKTNFETDLFMPLIKQVEVFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V+    + +   ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 ISSEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W +  ++   ++++GY     + 
Sbjct: 418 GLT-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGY-----TD 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            + ++ KV+                  +   G+  ++A  GQ+V+V+FDQTPFYAE GGQ
Sbjct: 469 LVVDNAKVI-----------------GLAADGKQADQAEPGQQVDVIFDQTPFYAEMGGQ 511

Query: 528 LGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + DTG  I +   +   + DVQ       + H +     ++      L +D     ++  
Sbjct: 512 VADTGQVIDNYGKVVATVKDVQHAPHQQNL-HTLELTAPIKKGARYKLVVDRARHLKIEK 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I +
Sbjct: 571 NHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWK 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI
Sbjct: 631 EIPVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV+Q   V  RV E+ 
Sbjct: 686 GLFKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQ 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVD---SKELKSVMD 814
           +     QL  A ++ +     L+  +  DV   +        I +EV      +L+ + D
Sbjct: 746 D-----QLKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMAD 800

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             ++K  S +++L   + + KA++L+ V + L     A DL +  A  +  GGGGGRP +
Sbjct: 801 DWRQKDYSDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAI-NGGGGGRPTL 858

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ+GG N     +A+   + F+
Sbjct: 859 AQAGGKNPAGISEALKLASQFM 880


>gi|153807409|ref|ZP_01960077.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185]
 gi|149129771|gb|EDM20983.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185]
          Length = 872

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 344/923 (37%), Positives = 509/923 (55%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAVMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMEDTKAAGKIEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  +++  FN  +++Q+ RAR ++  + +G     W +LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNLEEFNAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E   +  ++   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPFMACVNTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV
Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ--GNVV 757
           ++TG I ++ IVSESS+ AG+RRIEA TG R    L    + L  L +    +   G  +
Sbjct: 671 AATGNIGMVKIVSESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTPDLGIAI 730

Query: 758 GR-------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +       +++  E++ K +    K +L  N++++  H I  + F + + +EV    +K
Sbjct: 731 RKYLEENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVIKFCAPLPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G +   K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGSTDAGKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +    A+  V
Sbjct: 844 GQPHFATAGGKNADGLPAAVEKV 866


>gi|227510197|ref|ZP_03940246.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190402|gb|EEI70469.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 887

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 346/924 (37%), Positives = 516/924 (55%), Gaps = 85/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 14  SQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKNPRMTSS 73

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K F  D+
Sbjct: 74  QKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPKWFGWDK 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D +A K W+ + G+S D II I   DNFW + + GP GP SEIF+D+G  
Sbjct: 130 DKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIFYDRGAD 185

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E +R++E+WN+VF QF    +     LP+ +IDTGMGLER+ +
Sbjct: 186 FDELAPDDPENYPGG--ENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLERVVS 243

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           + Q    N++ DLF  +I+ +E  +  K  G N    V  R+I DH R+ +  I DG LP
Sbjct: 244 IFQHAKTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGDGALP 303

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG     +  L P +   + S YPE+++ +  IE+ +R
Sbjct: 304 SNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQRDYIEKVIR 363

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           SE++RF +TL  GL LL  V++      K+EI +G  AFKLYDT+G P ++ ++     G
Sbjct: 364 SEEDRFNETLADGLKLLHDVIADTKAESKNEI-DGPTAFKLYDTYGFPYELTKEEASEVG 422

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L G+D   F   + +Q+ RAR    G  S G    +   +K+    ++++GYD L     
Sbjct: 423 L-GVDKQGFEVEMHKQKERARNARSGAKSMGVQRDLLVKVKDD---SEYVGYDTLD---- 474

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             +D K++                  IV+  ++V E+     +EV+FD+TPFYAE GGQ+
Sbjct: 475 -VKDAKLI-----------------DIVENEKLVSES-KADTIEVIFDKTPFYAEMGGQV 515

Query: 529 GDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV------LTIDYQN 579
            D G  +   GD +   + DVQ    G  +H        ++T+ SLV      L +D   
Sbjct: 516 ADRGVILDENGDKV-ADVIDVQHAPNGQNIH-------TIKTQESLVKGQRYHLVVDKLF 567

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             ++  NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  V
Sbjct: 568 HSRVEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMV 627

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I + + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV
Sbjct: 628 NKQIFKEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHV 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T +I L  IVSES + AG+RRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  
Sbjct: 683 KNTRDIGLFKIVSESGVGAGVRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPT 742

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHK--IADVNFMSHIISEVDSKELKSVM 813
           RVE++ +E + L+      + +L     E +  HK        ++ II +    +L+ + 
Sbjct: 743 RVEQLQDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLT 802

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872
           D  + K  S +++L G    +KA++++ V+++ + D   A DL +  A  +  GGGGGRP
Sbjct: 803 DTWRSKRLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNI-KGGGGGRP 860

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
           +MAQ+GG + +  D+A+     +L
Sbjct: 861 NMAQAGGKDPSGLDKAMKAAVEWL 884


>gi|170758241|ref|YP_001787882.1| alanyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|205830034|sp|B1KXB7|SYA_CLOBM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169405230|gb|ACA53641.1| alanine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 879

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 336/916 (36%), Positives = 526/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI F++G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFNRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q     +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+
Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V S V  I++  E   E   G +  +V   TPFYAE GGQ+
Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEIEKGNEGVIVTYNTPFYAEMGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++   R  +  NH+
Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEGRRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   
Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I + 
Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            +VSE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KVVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED   + I +   V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVASIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK + AI  V + ++
Sbjct: 860 PNKLEDAIKTVETVVE 875


>gi|33860604|ref|NP_892165.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|41018179|sp|Q7V3N0|SYA_PROMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33633546|emb|CAE18503.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 886

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 329/909 (36%), Positives = 520/909 (57%), Gaps = 80/909 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P  +A T+ Q
Sbjct: 15  IRKEFLNFYHEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+T  + L    +
Sbjct: 73  KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIEWAWELVTDIYGLSAENI 128

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ ED+++ K+WK+  G+   +II++   DNFWS  +TGPCGPCSE++FD  +   G
Sbjct: 129 IVSVFHEDDDSVKIWKEDIGIHPKRIIKLGEKDNFWSSGKTGPCGPCSELYFD-FKPEKG 187

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K NNY+
Sbjct: 188 VQNIDLEDGDRFIEFYNLVFMQYNRDPDGQLTDLKYKNIDTGMGLERMAQILQKKKNNYE 247

Query: 246 IDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +IQ + +++ + Y  +     ++ ++I DH+R+   LI+DG++ +N GRGY+LR
Sbjct: 248 TDLIFPIIQKASEISKIDYYSSGERTKISLKIIGDHIRAVIHLISDGVIASNLGRGYILR 307

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG     +  L       M   YP+L      I   ++ E+ RF +TL
Sbjct: 308 RLIRRMVRHGRLLGLKNEFLSKLASVGIKLMQENYPDLKNNCDHILSEIKIEEIRFRETL 367

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LLD ++S   K  ++ G  AF+LYDT+G PL++ ++I     + G+D+  F++ +
Sbjct: 368 ERGEKLLDELISSGQK--MITGFKAFELYDTYGFPLELTEEIAQENNI-GVDVKGFDKEM 424

Query: 423 EEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             Q+ RA+A S    L L      +I     + +  T F GYD L               
Sbjct: 425 SAQKERAKAASQIIDLTLEGSLEREI-----DLFDKTLFNGYDSLDS------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + +K I  +  +V++A  GQKV +V DQT FY E+GGQ+GD G  + + 
Sbjct: 467 ----------DAEIKGIFLESTLVKQASEGQKVLIVLDQTSFYGESGGQVGDIGTILSND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + + +V +K + +F+H+ IV++GIL     +   ++   R + + NH+ATHLL  AL 
Sbjct: 517 LEVVVDNVIRK-KNVFLHYGIVKKGILSLGQKVKTKVNDLARAKAAANHTATHLLQSALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++   V Q GS +  + LRFD   SKPIT  ++  +E  VN  I +N  +  + M + +
Sbjct: 576 VVVNESVGQKGSLVAFNKLRFDFNSSKPITKDQIFKVETLVNSWILENHSLNIKNMAKSE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA A+ G KY+D VRVV V        S  LCGGTHV +T E+    I+SE  I A
Sbjct: 636 ALERGAVAMFGEKYDDEVRVVDVPSV-----SMELCGGTHVKTTSELGCFKIISEEGISA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA++GQ A  +   ++  +  L   LK +   ++ RV  +  E     LI+  ++
Sbjct: 691 GVRRIEALSGQSAFEYFSDKNSLVSQLCDLLKANPNQLLDRVNSLQSE-----LINKNKE 745

Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSV----MDALQKKIQSGIIML 827
           +Q   ++++  K +        V   S IIS++D  +  S+    +D   K     +++L
Sbjct: 746 IQKMKDEIAYFKYSSLSSSANKVGLFSLIISQLDGLDGNSLQSAALDLTSKLGDKSVVIL 805

Query: 828 VGISKEKKASVLIVVT--EDLLDRFNAV-----DLARLSAKVLGGGGGGGRPHMAQSGGP 880
            GI  ++   +L VV+  EDL+ R         D++R+ +     GGGGG+P+ AQ+G  
Sbjct: 806 GGIPDKENRKLLFVVSFGEDLVKRGMHAGKLINDISRICS-----GGGGGKPNFAQAGAK 860

Query: 881 NGNKADQAI 889
           + +K + A+
Sbjct: 861 DIDKLNDAL 869


>gi|60680248|ref|YP_210392.1| alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|81316682|sp|Q5LHE6|SYA_BACFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|60491682|emb|CAH06434.1| putative alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
          Length = 872

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV+        + D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  +++  F+  +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNVEEFDAEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN
Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV
Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F       V  
Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTPDLGVAI 730

Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           R        +++  E++ K +    K +L  NV++++  K+  + F   + +EV    +K
Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + A+  V
Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866


>gi|116629092|ref|YP_814264.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238853835|ref|ZP_04644200.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282852129|ref|ZP_06261486.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311111122|ref|ZP_07712519.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273910|sp|Q045P6|SYA_LACGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116094674|gb|ABJ59826.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238833530|gb|EEQ25802.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282556693|gb|EFB62298.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311066276|gb|EFQ46616.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 882

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465
             +D   F++ ++ Q+ RAR     L S G+ +    ++K+K    YG            
Sbjct: 418 K-VDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              ++E    L                  IV   ++V++A  G+   ++FD+TPFYAE G
Sbjct: 466 ---LEEKHAKLID----------------IVVNDKLVDKA-DGEHATLIFDKTPFYAERG 505

Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581
           GQ+ D G  +     L  ++TDVQ       +H   +   IL  E     +L +D + RR
Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDI---ILPLEKGQEYILKVDQKRRR 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+
Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T + + +  +  GA AL G KY D VRVV ++       S+  CGGTH  +
Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760
           T +I +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K ++  +V  ++
Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKI 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814
             + E+ R  Q    + K Q+N     DL  + +  V  ++ I ++ D +   +L+ + D
Sbjct: 738 SSLEEDLRASQKEAEQLKAQINKAKAGDL-FNDVKQVKGLTVIAAQADVEGMNDLRELAD 796

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +S +++L      K   V+ +  + +     A DL + +A +  GGGGGGRP+M
Sbjct: 797 NWKSSDKSDVLVLAAEVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ+GG N      AIA V
Sbjct: 856 AQAGGKNPAGLKDAIAKV 873


>gi|53712054|ref|YP_098046.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|253563907|ref|ZP_04841364.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265765389|ref|ZP_06093664.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|59798506|sp|Q64YB4|SYA_BACFR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52214919|dbj|BAD47512.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|251947683|gb|EES87965.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263254773|gb|EEZ26207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
          Length = 872

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV+        + D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  +++  F+  +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNVEEFDAEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN
Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV
Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F       V  
Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDLGVAI 730

Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           R        +++  E++ K +    K +L  NV++++  K+  + F   + +EV    +K
Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + A+  V
Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866


>gi|300784619|ref|YP_003764910.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299794133|gb|ADJ44508.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 886

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 333/915 (36%), Positives = 507/915 (55%), Gaps = 59/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   I   FL  F+  GH  +PS+ LI  +DP L+F N+GMV FK  F G+  P Y   T
Sbjct: 2   DTHEITDRFLRHFEGRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKCVR      D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK      
Sbjct: 61  SVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIEAAWELITKPQTEGG 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD  R++ TVY++D EA  LW+K++GL  ++I      DN+W M   GP GPCSEI++
Sbjct: 117 FGLDPERIWATVYNDDSEAAGLWRKLTGLPGERIQARDGKDNYWDMGVPGPGGPCSEIYY 176

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLE 231
           D+G    G   G   + +RYIEIWNLVFMQ  + +   +        LPK +IDTGMG+E
Sbjct: 177 DRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDLSPKLGHKPIGELPKKNIDTGMGVE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADG 289
           R+AT+LQ   N Y+ DL + +I  +E+ +G +Y  N+   V  RVI DH R+   LI DG
Sbjct: 236 RVATILQGVENVYETDLVRPVIGRAEEFSGRRYGSNHADDVRFRVIADHARTGVMLIGDG 295

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P N+GRGYVLRR++RR +   RLLG  EP++      +   MG  YPEL+     I E
Sbjct: 296 VTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVRDTMGPTYPELVSGFDRINE 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +R E+E F  TL  G  + D     +  G  ++L GD AF+L+DT+G P+D+  ++   
Sbjct: 356 VVRIEEEAFLSTLTSGSRIFDMAAEETKRGGGDVLAGDKAFQLHDTYGFPIDLTLEMAAE 415

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466
           +GL  +D   F   + EQR+RA+A +    +G  +   +  + E++G T+F+GY  L+  
Sbjct: 416 QGLT-VDEEGFRTLMNEQRTRAKADAAARKTGHGDLSEYRKVLEQHGETEFLGYTDLQ-- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A+++ G+ V    +G+K E+V D+TPFYAE+GG
Sbjct: 473 ---------------------AEAKVVALLEDGQPVRSVSAGKKAELVLDRTPFYAESGG 511

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ DTG  +GDG+ L++ DVQK   G++VH   V  G +  +  +  ++D   R  +  +
Sbjct: 512 QVADTGVLLGDGVELKVLDVQKIVPGLYVHRVEVVDGEIGLDSKVTGSVDAHRRLSIERS 571

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H A+    G   +Q GS  +P  +RFD T    +++  L  +E  VND +  N
Sbjct: 572 HSATHLVHAAVRGAYGKRAAQAGSLNSPGRMRFDFTTPGSVSADVLTEVEQEVNDYLQTN 631

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V +    ++ A+  GA AL G KY + VRVV     D G +S  LCGGTHV   G++ 
Sbjct: 632 VEVQSFTTTKDKALELGAVALFGEKYGNDVRVV-----DMGDYSRELCGGTHVDRIGQLG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +VS++SI +G+ R+EA+ G  A  ++  +   +  LA+  KV    + GR++++   
Sbjct: 687 LVKLVSDASIGSGVHRVEALVGTDALKYVRKEQLLVSQLANTFKVPSDQLPGRIDDVLTR 746

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI- 820
            +  +   A+ K Q  +           +I  V  ++ ++ +VD   L+++   ++ ++ 
Sbjct: 747 LKNAEKEIAQLKTQQVLGSAGALVDKAQEIGGVTVVAEVVPDVDGNGLRALASDIRGRLG 806

Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + G++ L   + EK + V+            A  L    A+ + GG GGG+P MAQ GG
Sbjct: 807 TRPGVVALFSPAGEKLSFVVATTKAAQEKGIAAGKLVPSFAEKI-GGRGGGKPDMAQGGG 865

Query: 880 PNGNKADQAIAGVAS 894
            N   A +A+  + S
Sbjct: 866 TNPAGAAEAVTALRS 880


>gi|255007587|ref|ZP_05279713.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313145280|ref|ZP_07807473.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313134047|gb|EFR51407.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 872

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 347/923 (37%), Positives = 507/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV+        + D EA  +W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASIWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI++  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKSIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKATGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++ + F+  +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNTVEFDAEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  ++   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVNTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN
Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV
Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F       V  
Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAPDLGVAI 730

Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           R        +++  E++ K +    K +L  NV++++  K+  + F   + +EV    +K
Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + A+  V
Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866


>gi|300362251|ref|ZP_07058427.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300353242|gb|EFJ69114.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 882

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465
             +D   F++ ++ Q+ RAR     L S G+ +    ++K+K    YG            
Sbjct: 418 K-VDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              ++E    L                  IV   ++V++A  G+   ++FD+TPFYAE G
Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505

Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581
           GQ+ D G  +     L  ++TDVQ       +H   +   IL  E     +L +D + RR
Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDI---ILPLEKGQEYILKVDQKRRR 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+
Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T + + +  +  GA AL G KY D VRVV ++       S+  CGGTH  +
Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760
           T +I +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K ++  +V  ++
Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKI 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814
             + E+ R  Q    + K Q+N     DL  + +  V  ++ I ++ D +   +L+ + D
Sbjct: 738 SSLEEDLRASQKEAEQLKAQINKAKAGDL-FNDVKQVKDLTVIAAQADVEGMNDLRELAD 796

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +S +++L      K   V+ +  + +     A DL + +A +  GGGGGGRP+M
Sbjct: 797 NWKSSAKSDVLVLAAEVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ+GG N      AIA V
Sbjct: 856 AQAGGKNPAGLKDAIAEV 873


>gi|257063513|ref|YP_003143185.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
 gi|256791166|gb|ACV21836.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
          Length = 889

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 331/920 (35%), Positives = 506/920 (55%), Gaps = 63/920 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF--TGQEKPVYQA 60
             + IR  +L+FF+    + LPSSSLIP +DP+L+ T++GMV FK  F    +  P Y  
Sbjct: 5   TTAEIREKYLKFFEGKACKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPAYVG 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFK+     AW+    E +L
Sbjct: 64  AATVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGKYFKKEMCAWAWEFCLNELEL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TV+++D+E  ++WK + G+    I R+  +DNFW    TGPCGPCSEI++DQG
Sbjct: 120 PKEKLYFTVFEDDDETIEIWKSL-GVEDSHISRLGEDDNFWRAGPTGPCGPCSEIYYDQG 178

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G P  +   + +R++E WN VF Q++ Q       LP  +IDTGMGLERMA ++Q
Sbjct: 179 PEFGCGDPNCAPGCDCDRFLEFWNCVFTQYDGQEDGTLAPLPTKNIDTGMGLERMAAIMQ 238

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNH-----------RVIVDHLRSSSFLI 286
              +N+D D+ + LI   E+++G  Y G  N V H           R+  DH RS +F+I
Sbjct: 239 GVQSNFDTDVIRGLIAVGERLSGKSYVGKANTVGHGSEQGDIDLSLRICADHSRSVAFMI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADGILP+NEGRGYVLRR++RRA+ + R LG     +   +  +   MG  YPE+++ + L
Sbjct: 299 ADGILPSNEGRGYVLRRLLRRAVMHGRKLGIEGAFLNEYVAVIVDLMGHVYPEIVENRAL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E  + SE+  F  TL +G   L   L +L +   L+GDVAFKL+DT+G P+++ ++I  
Sbjct: 359 VESVIASEEGAFANTLRQGQAYLAEALKNL-EGTTLSGDVAFKLHDTYGFPVEVTEEICS 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHS---LGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
             G++ +D   F + + EQR RARA +         T   I+  L ++ G T+F+GY+  
Sbjct: 418 ESGIS-VDHARFEECMNEQRERARAATKDDAEAAWSTYGSIYADLLKELGPTKFVGYE-- 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G+ +                     + +KAI++ GE+V     G++ E+V D TPFYAE
Sbjct: 475 -GTDYE-------------------GATIKAIIRNGELVGSLHRGEEGEIVLDTTPFYAE 514

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQ 582
            GG++GDTG   G     ++ D +   +G+  H   ++E      + ++  ++D Q R  
Sbjct: 515 MGGEVGDTGMLHGTFGVSEVLDTKAPEKGLVCHRVRVIEGDCHAVDETVNASVDAQRRAL 574

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH + +T  ++  +E   N+ 
Sbjct: 575 ITRNHTATHLLHAALREVLGDHVKQKGSYVGPDRLRFDFTHFEGMTPEQIAEVERVANEK 634

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           + Q +P      +   A  +G  AL G KY D VRVV     + G  S  LCGG HVS+T
Sbjct: 635 VMQAIPTTIYETSLNAAREAGVTALFGEKYGDTVRVV-----EAGEFSRELCGGCHVSNT 689

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI  + IVSE S  A +RRIEA+T   A +++   + +LK  A+ L+V   +V  R   
Sbjct: 690 AEIGFIKIVSEGSSAANVRRIEALTSVEALNYMNAVEAELKETAAELRVPMFDVSERTAS 749

Query: 763 ---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQ 817
                ++Y        K   + N+ +     + +V +   +  I  +D+  L++  D ++
Sbjct: 750 NLATIKDYETKAKNAKKMAAEGNIAE-HVKDVVNVGYPLLVVRIDGLDTGGLRNAWDIIR 808

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            ++++    ++G     K  ++   T++ +   FNA  + +  A  +  GGGGG+P MAQ
Sbjct: 809 ARMETPGACIIGTVNNDKPIIMAAGTDEAVAAGFNAGAVIKNIAGNI-KGGGGGKPSMAQ 867

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG + +  D A+      L
Sbjct: 868 AGGKDASGLDAALQAARDML 887


>gi|226323189|ref|ZP_03798707.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758]
 gi|225208379|gb|EEG90733.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758]
          Length = 855

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 346/892 (38%), Positives = 510/892 (57%), Gaps = 60/892 (6%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R G    D++NVG+
Sbjct: 1   MKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIRTG----DIENVGK 56

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142
           T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +VY++D+EA+K+W +
Sbjct: 57  TARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSVYEDDDEAWKIWNE 116

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE--EGERYIEI 200
             G++ ++I R    DNFW    +GPCGPCSEI++D+GE    G PG +   E +RY+EI
Sbjct: 117 EIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPGCTVGCECDRYMEI 175

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WN VF QF+         L + +IDTGMGLER+A ++Q+  + +DID  K L     ++ 
Sbjct: 176 WNNVFSQFDNDGHGNYSELKQKNIDTGMGLERLACIVQDVDSMFDIDTLKALRDQVCEIA 235

Query: 261 GMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           G+ Y  N    V+ RVI DH+RS SF+I+DGI+P+NEGRGYVLRR++RRA  + RLL   
Sbjct: 236 GVSYGDNESTDVSLRVITDHVRSVSFMISDGIMPSNEGRGYVLRRLLRRACRHGRLLNIA 295

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
              +  L   +       YPEL + K  I   +R E+E+F KT+D+GLV+L+ +   + +
Sbjct: 296 PGFLTDLAATVIEGSKDGYPELEEKKDFIMNVIRKEEEQFEKTIDQGLVILNEMKEKMAE 355

Query: 379 D--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-----A 431
           +  + L+G+ AFKLYDT+G P+D+ ++IL       ID   F  A+E QR  AR      
Sbjct: 356 EGTKTLSGEDAFKLYDTYGFPIDLTKEIL-EEEGIDIDEEGFKAAMEVQRQTARKARKAT 414

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           + +G  +   E I  S+  K     F+GY+ L                          S 
Sbjct: 415 NYMGADATVYESIDPSVTSK-----FVGYEHLE-----------------------YESK 446

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKA 550
           +  +  + EIV+    G++  +  D+TPFYA +GGQ  D G    GDG    + DV+K  
Sbjct: 447 ITVLTTEDEIVDALSDGERGTIFVDETPFYATSGGQEADHGVIKCGDG-EFVVEDVKKML 505

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G   H   + +G+++    + LT+D Q R   + NHSATHLL  AL T+LG+HV Q+GS
Sbjct: 506 GGKIGHIGYMAKGMMKVGDQVTLTVDSQRRVLCARNHSATHLLQKALRTVLGTHVEQSGS 565

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +    LRFD +H   +T  EL+ +ED VN+ I+++LPVV + M  E+A  +GA AL G 
Sbjct: 566 YVDDKRLRFDFSHFSAMTPEELQKVEDMVNESISRSLPVVIKNMPIEEARKTGAQALFGE 625

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           KY D VRVV++     G +S   CGGTHV++T EI    I+SES + AG+RRIEA+T + 
Sbjct: 626 KYGDIVRVVNM-----GDYSIEFCGGTHVANTSEIGAFKILSESGVAAGVRRIEALTSKG 680

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786
              +    ++ L   A  LK +   V  ++  +  E ++L       K +L  + +    
Sbjct: 681 LMDYYGELEQLLHEAAKLLKATPDTVSEKIAHLQAENKELHSEVESLKSKLAKDAMGDVM 740

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               ++A V  ++  + ++D   L+ + D L++KI  G++++   S   K S++   T++
Sbjct: 741 DQVEEVAGVKVIAVSVEDMDMNGLRDLGDQLKEKIGEGVVVIAS-SANGKVSLMATATDE 799

Query: 846 LLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + +  +A +L +  A  + GGGGGGRP+MAQ+GG N      A+A V   L
Sbjct: 800 AMKKGAHAGNLIKAIASCV-GGGGGGRPNMAQAGGKNPAGIPDALAKVKEVL 850


>gi|184154997|ref|YP_001843337.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227514535|ref|ZP_03944584.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|183226341|dbj|BAG26857.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227087092|gb|EEI22404.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 882

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 330/922 (35%), Positives = 505/922 (54%), Gaps = 77/922 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT +  F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D ++     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           + +       P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEMNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+  E  +  K  G N    V  ++I DH+RS +F I DG 
Sbjct: 238 VSIFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V+    + +   ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 ISSEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W +  ++   ++++GY     + 
Sbjct: 418 GLT-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGY-----TD 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            + ++ KV+                  +   G+  ++A  GQ V+V+FDQTPFYAE GGQ
Sbjct: 469 LVVDNAKVI-----------------GLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQ 511

Query: 528 LGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + DTG  I +   +   + DVQ       + H +     ++      L +D     ++  
Sbjct: 512 VADTGQVIDNYGKVVATVKDVQHAPHQQNL-HTLELTAPIKKGARYKLVVDRARHLKIEK 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I +
Sbjct: 571 NHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWK 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI
Sbjct: 631 EIPVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV+Q   V  RV E+ 
Sbjct: 686 GLFKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQ 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVD---SKELKSVMD 814
           +     QL  A ++ +     L+  +  DV   +        I +EV      +L+ + D
Sbjct: 746 D-----QLKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMAD 800

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             ++K  S +++L   + + KA++L+ V + L     A DL +  A  +  GGGGGRP +
Sbjct: 801 DWRQKDYSDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAI-NGGGGGRPTL 858

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ+GG N     +A+   + F+
Sbjct: 859 AQAGGKNPAGISEALKLASQFM 880


>gi|294778219|ref|ZP_06743645.1| alanine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|294447847|gb|EFG16421.1| alanine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 872

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/921 (37%), Positives = 514/921 (55%), Gaps = 84/921 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG+   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++   FN  +++Q+ RAR ++  + +G     W ++KE  G T F+GYD 
Sbjct: 418 LILRENGMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD- 468

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                F + +  +L                + I Q+ + +         ++V   TPFYA
Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GDTG  + +   ++I D  KK   + +H  I ++     ++ ++  +D + R  
Sbjct: 502 ESGGQVGDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAA 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  
Sbjct: 559 CAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAK 618

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+P+   R +  E A   GA AL G KY D VRVV         +S   CGGTHV +
Sbjct: 619 IRENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPA 672

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGN 755
           TG+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +       LKV+   
Sbjct: 673 TGKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRK 732

Query: 756 VVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            +     +++  EE+ K +    K +L  N ++++  K+         I  + +  +K +
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDI 786

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
              L+ +I + + +++G     K  + ++++EDL+    NA  L R +AK++  GGGGG+
Sbjct: 787 AFQLKGEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQ 845

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           PH A +GG N +  + A+  V
Sbjct: 846 PHFATAGGKNPDGLNAAVDKV 866


>gi|320528969|ref|ZP_08030061.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138599|gb|EFW30489.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 872

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 338/915 (36%), Positives = 517/915 (56%), Gaps = 71/915 (7%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L FF +K  H  L S SLIP +DPTL+   +GM P K  FTG+ KP    +TT
Sbjct: 4   NELREAYLRFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPCPRITT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L + 
Sbjct: 64  SQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKE 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++++Y +D EA  +W +  GL  D I+ +  NDNFW +   GPCGP SEI+ D GE  
Sbjct: 120 KLWVSIYPDDNEARAIWLEQPGLLPDHIVPL--NDNFWEIG-PGPCGPDSEIYIDLGEGR 176

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R++EIWNLVF Q+++  + E  +L   +IDTG GLER+A+V+Q K 
Sbjct: 177 GCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQNKE 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N++ DL   +I  + +++G+ Y  + +  ++ +VI DH RS S +I DGILP+NEGRGY
Sbjct: 237 TNFETDLLYPIIAYASKISGVAYGSDKSKDISLKVIADHARSISVMIMDGILPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDER 357
           VLRR +RRA+ + R+LG T+P +   + A+      A  + EL   +  I+  +R E+ER
Sbjct: 297 VLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVEEER 356

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL +G+ LL+G +  L ++   +L GD+ FKLYDT+G P ++ ++IL   G+  +D 
Sbjct: 357 FASTLAQGMELLNGEIDRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT-LDG 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F++ +E QRSRAR       S   E    ++ +       I    LR     KE    
Sbjct: 416 VEFDKEMEAQRSRAR-------SARAENQVVAVPD----LSNIDTSALRSDSTAKE---- 460

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         ++V AI + GEIV+    G+   ++ D+TPFYAE GGQ+GD G   
Sbjct: 461 --------------AVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEGVLR 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D   + I++ +K  +G   H A VE G +     + +T++ + +   + NH+ATHLL  
Sbjct: 507 SDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHLLQA 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G+HV Q GS +TPD LRFD T+ +P+T  +++ IE+ VN  I +++ +   +M 
Sbjct: 567 ALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDISMMP 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             DA   GA AL G KY D VRVVSV        S  LCGG+HV +TG+I L  I+ E  
Sbjct: 627 IADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIGEFG 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----- 770
           + AG+RRIEAITG+ A S+       ++ +++ LK    ++  ++++  +E + +     
Sbjct: 682 VAAGVRRIEAITGKAAFSYAATLYHTVQEISAKLKTRPEDLSYQIDKFLDERKAMQEQLR 741

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829
           Q    + K       ++  +I   + ++   + VDS  EL+++ D   +K+  GI++L  
Sbjct: 742 QFAEFRDKADAQKLLMAVREIGAFHVVAG-KANVDSMDELRTIADLACEKLDHGIVILAA 800

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG------GGGRPHMAQSGGPNGN 883
           +  +K   V +VV  D     NAV     + +++          GGGRP MAQ+GG    
Sbjct: 801 VIDDK---VSLVVKADK----NAVSAGAHAGQIIKEAAKEVGGGGGGRPDMAQAGGKTPE 853

Query: 884 KADQAIAGVASFLKK 898
              QA     S +++
Sbjct: 854 NIPQAFDAAISVIQR 868


>gi|301161775|emb|CBW21315.1| putative alanyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 872

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV+        + D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  +++  F+  +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENGMT-VNVEEFDVEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + + Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN
Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV
Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F       V  
Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDLGVAI 730

Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           R        +++  E++ K +    K +L  NV++++  K+  + F   + +EV    +K
Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + A+  V
Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866


>gi|86134548|ref|ZP_01053130.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821411|gb|EAQ42558.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 873

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/918 (37%), Positives = 502/918 (54%), Gaps = 80/918 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FFQK  H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    +T  QK
Sbjct: 6   IRATFLDFFQKKSHLVVPSAPMVTKDDPTLMFVNSGMAPFKEYFLGNATPKKNRITDSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDILY 125

Query: 127 ITVYD---------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           +TV++          D EA+ +WK+   ++ D+I++    DNFW M E GPCGPCSEI  
Sbjct: 126 VTVFEGSEDADQLNMDTEAYDIWKEY--IAEDRILKGNKKDNFWEMGEQGPCGPCSEIHV 183

Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D    + +    G    +E+  + +EIWNLVFMQ+ ++       LP   IDTGMG ER+
Sbjct: 184 DIRSAEEKAKLDGRTLINEDHPQVVEIWNLVFMQYNRKANGTLEELPNKHIDTGMGFERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
             VLQ   +NYD D+F  +I+    +T   Y  N    +  RVI DH+R+ +F IADG L
Sbjct: 244 CMVLQNVQSNYDTDVFTPIIREIGTITNTSYGKNEKQDIATRVISDHVRAVAFSIADGQL 303

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K LIE  
Sbjct: 304 PSNTGAGYVIRRILRRAVRYGFTFLNKKEPFIYRLVSILSDKMGKAFPELKSQKQLIENV 363

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F +TLD+GLVLLDG++ +    EI +GD  F+LYDT G P+D+   IL  +G 
Sbjct: 364 IKEEETSFLRTLDQGLVLLDGIIENSKSKEI-SGDKVFELYDTFGFPIDLTALILSEKGY 422

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + L++Q++R+RA      S  +   W  L +     +FIGYD L  +  + 
Sbjct: 423 T-LDEKGFEEELQKQKNRSRA-----ASEMSTDDWTILIDD-AVEEFIGYDFLEANVKLT 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
             RKV  +K                            G+  ++VF+ TPFY E GGQ+GD
Sbjct: 476 RYRKVTSKK---------------------------DGEMYQLVFNLTPFYPEGGGQVGD 508

Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G      GD + +  T   KK   + +H A      L      V  +D + R +   NH
Sbjct: 509 KGYLEDTHGDVVYILDT---KKENNVIIHFAKNLPQNLDANFKAV--VDEKQRYRTECNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T+ EL+ +E+ VN  I+  L
Sbjct: 564 TATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKLTTEELQDVENFVNARISGKL 623

Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P+  +R +  E AIA GA AL G KY D VR +          S  LCGGTHV +TG+I 
Sbjct: 624 PLEESRNITMEKAIADGAMALFGEKYGDTVRAIKFG------KSIELCGGTHVKNTGDIW 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I SE ++ AGIRRIEAIT    +      +  L  +   L  ++ N V  V+++ +E
Sbjct: 678 HFKIKSEGAVAAGIRRIEAITNDAVKDFYFDNNRTLFEIKDLLNNTK-NPVKAVQKLQDE 736

Query: 767 YRKLQLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +LQ    ++ L+   ++LS        +I  V F++  + ++D+  +K++  +L K+ 
Sbjct: 737 NTELQK-QVEQLLKEKAQNLSGEIKNQLQEINGVQFLATKV-DLDANGIKNLAFSLGKEH 794

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           Q+  ++       +KA +   ++++L +   +NA  + R   K++  GGGGG+P  A +G
Sbjct: 795 QNLFLLFASAPSNEKALLTCYISKELANERGYNAGTVVRELGKLI-HGGGGGQPFFATAG 853

Query: 879 GPNGNKADQAIAGVASFL 896
           G N     +A+     +L
Sbjct: 854 GRNPGGIPKALEKAKDYL 871


>gi|123967582|ref|YP_001008440.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|205830182|sp|A2BNH2|SYA_PROMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123197692|gb|ABM69333.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 886

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 333/917 (36%), Positives = 523/917 (57%), Gaps = 78/917 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P  +A T+ Q
Sbjct: 15  IRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L    +
Sbjct: 73  KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSVENI 128

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ EDEE+ K+W    G+  D+I+++   DNFWS  +TGPCGPCSE+++D       
Sbjct: 129 IVSVFHEDEESAKIWSDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHP--EK 186

Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           GL     E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K NNY
Sbjct: 187 GLQNIDLEDGDRFIEFYNLVFMQYNRDPNGKLTDLKFKNIDTGMGLERMAQILQKKQNNY 246

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQ   ++  + Y   +  N ++ ++I DH R+   LI+DG+  +N GRGY+L
Sbjct: 247 ETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVSASNLGRGYIL 306

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF +T
Sbjct: 307 RRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFRET 366

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LLD ++S   K  +++G  AF+LYDT+G PL++  +I     ++ +D+  F + 
Sbjct: 367 LERGEKLLDELISSGQK--LISGFKAFELYDTYGFPLELTVEIAEEHSIS-VDVKGFEEE 423

Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +  Q+ RA+A S  +     G+ E+      + +  T F GY             K L  
Sbjct: 424 MNVQKERAKAASSNIDLTLEGSLEREI----DVFNKTVFNGY-------------KSLLS 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  I          K I     +V+EA  GQKV +V DQT FY E+GGQ+GD G    + 
Sbjct: 467 EAEI----------KGIFLDSTLVKEASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + + +V +K + +F+H+  +++G L     +   +   NR + + NH+ATHLL  AL 
Sbjct: 517 VEVLVDNVMRK-KNVFLHYGTIKKGKLTIGQKVKTNVSSSNRAKAAANHTATHLLQSALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +++   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +
Sbjct: 576 SVINESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHSLEIKNMSKSE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA A+ G KY+D VRVV+V     GV S  LCGGTHV +T E+    I+SE  I A
Sbjct: 636 ALEKGAVAMFGEKYDDEVRVVNVP----GV-SMELCGGTHVKTTSELGSFKIISEEGISA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E     LI+  ++
Sbjct: 691 GVRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAE-----LINKNKE 745

Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA---LQKKI-QSGIIML 827
           +Q   ++++  K +        VN  S +++++D  +  S+  A   L   +    I++L
Sbjct: 746 IQKMKDEIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVIL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881
            GI   +   +L VV+  L D  +AV +   + K++        GGGGG+P+ AQ+G  +
Sbjct: 806 GGIPNPENRKLLFVVS--LGD--DAVKIGLHAGKLINEIARICSGGGGGKPNFAQAGAKD 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K   A+    ++L+K
Sbjct: 862 IDKLSDALDYAKNYLQK 878


>gi|291542143|emb|CBL15253.1| alanyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 877

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 328/906 (36%), Positives = 503/906 (55%), Gaps = 56/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  FLEFF+  G   LPS SL+P +D +L+  NSGM P K  FTG+  P  + V
Sbjct: 4   TGLNELREKFLEFFESKGCLRLPSFSLVPKDDNSLLLINSGMAPMKKYFTGEVTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++ VG T RH TFFEMLGNFSFG YFK  A   AW+  TK  ++ 
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFGDYFKHEATAWAWEFFTKVLEMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+++Y++D+EAF +W K  G+    ++R+   DNFW    +GPCGPCSEI+FD+G+
Sbjct: 120 PEKLYVSIYEDDDEAFDIWTKEVGVDPSHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGD 178

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +R++E+WNLVF QFE   K     L   +IDTGMGLER+A V+Q 
Sbjct: 179 EKGCGRPDCHVGCECDRFVEVWNLVFTQFESDGKGNYTPLEHPNIDTGMGLERLACVMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N + +D  +++++   Q+TGM+Y  N  + V+ RVI DH+RS++F+I DG+LP+NEG+
Sbjct: 239 VDNLFLVDTIQNIMKHISQITGMEYGKNEKSDVSLRVITDHIRSTTFMIGDGVLPSNEGK 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLGY EP +  +   +  E  +AYPEL + +  I + ++ E+E 
Sbjct: 299 GYVLRRLLRRAARHGRLLGYNEPFLYKVCDTVIKENLTAYPELKEKQEFITKVIKVEEES 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           F KT+D+G  +L+G++    +D ++L+G+ AFKL DT+G P+D+ ++IL  +G+  +D+ 
Sbjct: 359 FAKTIDQGFKMLNGIMDS--EDVKVLSGEDAFKLNDTYGFPIDLTREILSEKGIK-VDVE 415

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK---EKYGATQFIGYDLLRGSKFMKEDR 473
            F + ++EQ+ R+R      G+      W S          T+F+GY  L+         
Sbjct: 416 RFRELMKEQKKRSRDARKNAGADA----WISDATDLSDVANTEFVGYTDLKS-------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          +S V AIV+ G  V+    G+   +V D+TPFY E GGQ+GDTG 
Sbjct: 464 ---------------TSKVLAIVKDGVRVDSIGEGENAIIVLDKTPFYGEGGGQVGDTGV 508

Query: 534 AIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    + +  K   G I++H   V+ G +     +   +D + R  ++ NH+A HL
Sbjct: 509 MESGSFSADVDNTTKNPSGTIYLHACTVKSGSINVGAEVSTAVDEERRADITRNHTAAHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q G  ++ D  RFD TH + +T+ EL  +++ VN  I + +PV T+
Sbjct: 569 LQSALREVLGNHVQQAGQLVSDDYFRFDFTHFEALTAKELIEVQNLVNKKILEAIPVTTQ 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A   GA AL G KY D VRVVS      G  S   CGGTHV +T  + L  I  
Sbjct: 629 EMPIEEAKKLGAMALFGEKYGDVVRVVS-----AGDFSVEFCGGTHVKNTANLGLFRIRQ 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----VGRVEE-IWEEY 767
           E S+ AG+RRIEA+TG     ++ G    +  + S LK++        V + E+ I E+ 
Sbjct: 684 EGSVAAGVRRIEALTGMGVLKYINGMSAVIMDVCSLLKIANPKAVVEGVQKAEQLIKEQQ 743

Query: 768 RKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           R++  +++K  + Q+        +   V  ++  I + ++  L+++ +  +      + +
Sbjct: 744 REINELNSKLAVAQIGQLFAGTTEENGVRVVTGRIDKANADILRTMCEKARDFAPKCVCV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   +  K         E L    NA  + +  A+   GG GGG+P MA +G     K  
Sbjct: 804 LATENDGKVTFAAACGKEALALGANAGKIIKAVAQ-KAGGNGGGKPDMAMAGAKQPEKIS 862

Query: 887 QAIAGV 892
           +A+  V
Sbjct: 863 EALDSV 868


>gi|172036637|ref|YP_001803138.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|205830042|sp|B1WYQ5|SYA_CYAA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171698091|gb|ACB51072.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 879

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 338/903 (37%), Positives = 519/903 (57%), Gaps = 64/903 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+ ++ H++LPS+SL+P  DPT++ T +GM+PFK IF GQ++P +   TT 
Sbjct: 11  NQIRDRFLQFYAQHNHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKQPDFPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L    
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYRLPPEN 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V+++D+EAFKLW+++ G+   +I R+   DNFW    TGPCGPCSE+++D    + 
Sbjct: 126 IVVSVFEKDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFM++ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GEDNIDLEDDSRFIEFYNLVFMEYNRDAEGNLAPLQNKNIDTGMGLERMAQILQKVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ +  +  + Y+       V+ +VI DH+RS   +IADGI  +N  RGYVL
Sbjct: 245 ETDLIFPIIETAANIANIDYQKATEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +         +AYP++ + +  I+  L  E+  F KT
Sbjct: 305 RRLIRRVVRHGRLIGIEGQFIKQVAETAIELSENAYPQVRERESFIKGELEREETAFLKT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  ++        ++G  AF LYDT+G PL++ Q+I     L  ++I  F   
Sbjct: 365 LERGEKLLAEIIEKTETQGQISGVDAFTLYDTYGFPLELTQEIAEESNLT-VNIEEFEAE 423

Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + +Q+ R++A   ++ L   G+ +K    L E    T F+GY  L+              
Sbjct: 424 MRQQQERSKAAHETIDLTVQGSLDK----LAEHIHPTAFLGYTDLQ-------------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G   G+ 
Sbjct: 466 ---------LTAKVEAVLIQGKTVDTAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGEN 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + +++ DVQK++ GIFVH   VERG +     +  TID   RRQ+  NH+ATHLL  AL 
Sbjct: 517 LVIRVEDVQKES-GIFVHFGRVERGSVSVNDQVTATIDRACRRQVQANHTATHLLQAALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++   +SQ GS +  D LRFD    + +TS EL+ IED +N  IA+       +M  E 
Sbjct: 576 KVVDKSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHETEIAVMPIET 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA A+ G KY   VRV+ V     GV S  LCGGTHV +T EI L  I+SES I +
Sbjct: 636 AKEKGAIAMFGEKYGSEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q     ++
Sbjct: 691 GVRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQ-----KE 745

Query: 779 LQLNVEDLSCHK----------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L+   +DL+  K          I +   +   + E+D+K L++  + LQ+K+  G ++L 
Sbjct: 746 LEAVKQDLAVAKSDQLLTEAESIGEFKLLVSDMGEMDAKALQTAAERLQQKLGEGAVILG 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKAD 886
            I  E K S L+      +++   +   +   ++  + GGGGGGRP++AQ+GG   +K  
Sbjct: 806 SIPSEGKVS-LVAAFSKKVNQEKQLQAGKFIGQIAKICGGGGGGRPNLAQAGGREPSKLS 864

Query: 887 QAI 889
           +A+
Sbjct: 865 EAL 867


>gi|168182642|ref|ZP_02617306.1| alanine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796002|ref|YP_002863554.1| alanyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182674085|gb|EDT86046.1| alanine--tRNA ligase [Clostridium botulinum Bf]
 gi|229262453|gb|ACQ53486.1| alanine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 879

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 336/915 (36%), Positives = 525/915 (57%), Gaps = 66/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FT  + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTRLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G +  S E     + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q
Sbjct: 178 AGEIKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEG 296
                +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NEG
Sbjct: 238 NVDTIFEVDTIKAILDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKRGYIKKVIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ ID
Sbjct: 358 RFDETIDAGMQILNDYIEEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-ID 416

Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L      
Sbjct: 417 KEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE----- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             V S V  I++  E       G +  +V   TPFYAE GGQ+G
Sbjct: 467 ------------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIG 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+A
Sbjct: 509 DTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V
Sbjct: 569 THILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  
Sbjct: 629 NTKVMNIEEAKEQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEY 767
           IVSE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + 
Sbjct: 684 IVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKE 743

Query: 768 RKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++ ++   K KL    ED    S  +I  V   S  + ++D   L+ + D ++  +QSG+
Sbjct: 744 KEKEIEALKLKLASGAEDEILNSIKEIKGVKVASAAVKDIDGNALRDLGDKVRDNMQSGV 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882
           ++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG + 
Sbjct: 804 VVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
           NK + AI  V + ++
Sbjct: 861 NKLEDAIKTVETVVE 875


>gi|126660159|ref|ZP_01731277.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126618524|gb|EAZ89275.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 879

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 340/904 (37%), Positives = 521/904 (57%), Gaps = 64/904 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+ +  H++LPS+SLIP  DPT++ T +GM+PFK IF GQ++P +   TT 
Sbjct: 11  NQIRDRFLQFYAQQNHQILPSASLIP-EDPTVLLTIAGMLPFKPIFLGQKQPDFPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L T+ + L    
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTQVYQLPPEN 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V++ D+EAFKLW+++ G+   +I R+   DNFW    TGPCGPCSE+++D      
Sbjct: 126 IVVSVFENDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYD-FHPER 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFM++ +  +     L K +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GEESIDLEDDSRFIEFYNLVFMEYNRDVEGNLTPLQKKNIDTGMGLERMAQILQKVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ +  +  + Y        V+ +VI DH+RS   +I+DGI  +N  RGYVL
Sbjct: 245 ETDLIFPIIETAANIANINYHKATEKTKVSLKVIGDHVRSVVHMISDGITASNTDRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +          AYP++ + +  I+  L  E+  F KT
Sbjct: 305 RRLIRRVVRHGRLIGIEGQFINQVAETAIQLSQKAYPQVRERESFIKGELEREETAFLKT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  ++    K   ++G  AF LYDT G P ++ Q+I     L  ++I  F   
Sbjct: 365 LERGEKLLAEIIEKTEKQGQISGVDAFTLYDTFGFPFELTQEIAEESNLT-VNIKEFEAE 423

Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +++Q+ R++A   ++ L   G+ +K    L E    T+F+GY  L+              
Sbjct: 424 MKQQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYTDLQ-------------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G   G+ 
Sbjct: 466 ---------LTAKVEAVLIQGKSVDIAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGEN 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + +++ DVQK++ GIFVH   VERG +    ++  TID   RRQ+  NH+ATHLL  AL 
Sbjct: 517 LVIRVDDVQKES-GIFVHFGRVERGQIAINDNVKATIDRACRRQVQANHTATHLLQAALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++ + +SQ GS +  D LRFD    + +TS EL+ IED +N  IA+     T +M  E 
Sbjct: 576 KVVDNSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHDTETAVMPLET 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA A+ G KY+  VRV+ V     GV S  LCGGTHV +T EI L  I+SES I +
Sbjct: 636 AKEKGAIAMFGEKYSAEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q     ++
Sbjct: 691 GIRRIEAVAGPAILEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQ-----KQ 745

Query: 779 LQLNVEDLSCHK----------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L+   +DL+  K          I +   +   + E+D+K L++  + LQ+K+  G ++L 
Sbjct: 746 LEAVKQDLAVAKSDQLLNEAETIGEFKLLVSDMGELDAKALQTAAERLQQKLGEGAVILG 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKAD 886
            I  E K S L+      +++   +   +   ++  + GGGGGGRP++AQ+GG   +K  
Sbjct: 806 SIPSEGKVS-LVAAFSKKVNKEKQLQAGKFIGQIAKICGGGGGGRPNLAQAGGREPSKLS 864

Query: 887 QAIA 890
           +A++
Sbjct: 865 EALS 868


>gi|326800500|ref|YP_004318319.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326551264|gb|ADZ79649.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 871

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 339/916 (37%), Positives = 508/916 (55%), Gaps = 77/916 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+  GHE++PS+ ++  NDPTLMFTN+GM  FK +F G+    Y  V   Q+
Sbjct: 6   IRQAFLNFFKSKGHEIVPSAPIVVKNDPTLMFTNAGMNQFKELFLGEAPIKYSRVVDTQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT  + +D+ RLY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTNVYKIDKDRLY 125

Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV++        ED EA+  WK+   + + +I++    DNFW M ETGPCGPCSEI  D
Sbjct: 126 VTVFEGDSEEGLPEDAEAYGYWKE--HIDSTRILKGNKKDNFWEMGETGPCGPCSEIHVD 183

Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                +   I G    +++   + IEIWN VFMQF +        LP   +DTGMG ER+
Sbjct: 184 CRSDEERRMIDGSTLVNADH-PQVIEIWNNVFMQFNRLKDGSLQPLPAKHVDTGMGFERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
             VLQ KT+NYD D+F+ LIQ   +   ++Y  N    +  RV+ DH+R+ SF IADG L
Sbjct: 243 VRVLQSKTSNYDTDIFQPLIQLIAKAAKVQYGENEQQDIAMRVMADHIRAISFAIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N   GYV+RRI+RRA+ YA   L + EP +  L+  L  +    + EL + +  +++ 
Sbjct: 303 PSNNKAGYVIRRILRRAVRYAYTFLNFKEPFLNTLVIPLAQQFEGVFDELYKQQDFVQKV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E+  F +TL  G+   +   +  G   +++GD AF+LYDT+G P+D + D++     
Sbjct: 363 VLEEELSFLRTLVTGIQRFESYHTDQG---LVSGDFAFELYDTYGFPID-LTDLMAREKG 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F  AL +Q+ R+RA +  + +G     W ++ E  G T F+GYD L     + 
Sbjct: 419 WKVDMPGFENALNKQKERSRA-ATAIDTGD----WVTVNED-GETHFVGYDNLATETKIL 472

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           + RKV                      +G+I        + ++V  QTPFYAE GGQ+GD
Sbjct: 473 KYRKVSA--------------------KGKI--------QYQLVLSQTPFYAEGGGQVGD 504

Query: 531 TGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG  I +  +  +QI D  KK  G+ +H +  +      E      +    RR +  NHS
Sbjct: 505 TGILIHETSKETIQIVDT-KKENGLIIHFS--DELPSHLEGVFFAKVAEDRRRDIQSNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS ++ + LRFD +H   ++  EL+ +E  VN  I +NL 
Sbjct: 562 ATHLLHAALKQVLGEHVNQKGSLVSEEVLRFDFSHFAKVSDEELRRVEQVVNAKIRENLA 621

Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   R +   DAI  G  AL G KY D VRV+  +       S  LCGGTHV  TG I  
Sbjct: 622 LDERRNVPYNDAIDMGVTALFGEKYGDFVRVIIFDEN----FSKELCGGTHVQYTGNIGF 677

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ---GNVVGRVEE-- 762
             I+SE ++ AG+RRIEAITG+RA   +  QDE +  L + LK  +     + G ++E  
Sbjct: 678 FKILSEGAVAAGVRRIEAITGRRAEEIIDRQDELINELKNLLKHPKDLSAAITGLLQENS 737

Query: 763 -IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + +E  K  +  A++  Q+ VE      I  V F+   +   ++  +K++  A++K I 
Sbjct: 738 KLKKEVEKSLVEKAQQLRQVLVE--KAIDINGVRFIGEQVELPNADAVKNLAFAIKKAID 795

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +G+ +++    + K ++ +V+++DL++R  +A  + R  AK +  GGGGG+P  A +GG 
Sbjct: 796 NGLFLVLAADFDGKPNLTVVLSDDLVNRGLDAGKIVRELAKEI-KGGGGGQPFYATAGGK 854

Query: 881 NGNKADQAIAGVASFL 896
           + +    A+    SF+
Sbjct: 855 DSSGLTVALEKAKSFV 870


>gi|254882808|ref|ZP_05255518.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|254835601|gb|EET15910.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
          Length = 872

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/921 (37%), Positives = 514/921 (55%), Gaps = 84/921 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG+   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++   FN  +++Q+ RAR ++  + +G     W ++KE  G T F+GYD 
Sbjct: 418 LILRENGMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD- 468

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                F + +  +L                + I Q+ + +         ++V   TPFYA
Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GDTG  + +   ++I D  KK   + +H  I ++     ++ ++  +D + R  
Sbjct: 502 ESGGQVGDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAA 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  
Sbjct: 559 CAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAK 618

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+P+   R +  E A   GA AL G KY D VRVV         +S   CGGTHV +
Sbjct: 619 IRENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPA 672

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGN 755
           TG+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +       LKV+   
Sbjct: 673 TGKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRK 732

Query: 756 VVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
            +     +++  EE+ K +    K +L  N ++++  K+         I  + +  +K +
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDI 786

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
              L+ +I + + +++G     K  + ++++EDL+    NA  L R +AK++  GGGGG+
Sbjct: 787 AFQLKGEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQ 845

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           PH A +GG N +  + A+  V
Sbjct: 846 PHFATAGGKNPDGLNAAVDKV 866


>gi|307326782|ref|ZP_07605974.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887545|gb|EFN18539.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 890

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 346/930 (37%), Positives = 516/930 (55%), Gaps = 94/930 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +    +V
Sbjct: 4   AEIRRRWLRFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRAVSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSSQEEGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL+ITVY++D+EA ++W+++ G+ A++I R+    N+WSM   GPCGPCSEI +D+
Sbjct: 119 LDPERLWITVYEQDDEAERIWREVIGVPAERIQRLGMGPNYWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTG 227
           G       P   EEG      ERY+EIWNLVFMQ+E+     +E F     LP  +IDTG
Sbjct: 179 G-------PEFGEEGGPAVNDERYVEIWNLVFMQYERGAGEGKENFPILGELPSKNIDTG 231

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
           +GLER+A +LQ   N Y+ D  + ++  + ++TG+ Y     + V+ RV+ DH+R+S  L
Sbjct: 232 LGLERLAMILQGVRNMYETDTLRVVMDKATELTGVAYGAAHESDVSLRVVADHMRTSVML 291

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGYVLRRIMRRA+   R+LG TEP++  L+  +   MG  YPEL+  + 
Sbjct: 292 IGDGVTPGNEGRGYVLRRIMRRAIRNMRILGATEPVVGELVDVVLKTMGQQYPELLTDRK 351

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
            IE    +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  +
Sbjct: 352 RIETVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLAGDKAFLLHDTWGFPIDLTLE 411

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462
           +   +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+F GY  
Sbjct: 412 MAAEQGLS-VDEAGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADSSGLTEFTGY-- 468

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                 T G S+IV  +V  G     A  G +VEVV D+TPFYA
Sbjct: 469 --------------------SHTEGESTIVGLLV-DGVSSPAAGEGDEVEVVLDRTPFYA 507

Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQL DTG   +  G  +++ DVQ+   G+ VH  +V+ G +     +   ID   RR
Sbjct: 508 EGGGQLADTGRITLDTGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGAGVHARIDITRRR 567

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+
Sbjct: 568 AIARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGGVLMDVEQKINE 627

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           ++++ L V   +M+ ++A   GA A  G KY DRVRVV++     G  S  LCGGTHV +
Sbjct: 628 VLSRELDVSAEVMSMDEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHN 682

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T ++ L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K       GR E
Sbjct: 683 TAQLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVK-------GRPE 735

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-----------DVNFMSHIISEV----DS 806
           E+ E+     ++   ++ +  +E     K+            DV   + + ++V     +
Sbjct: 736 ELPEKISG--MLGKLKEAEKEIERFRAEKVLQAAAGLAQGAKDVRGTALVAAKVPDGTSA 793

Query: 807 KELKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV 862
            +L+ ++  ++ +I   +  ++ L  ++  +  +V I   E   +R   A DL R +AK 
Sbjct: 794 DDLRKLVLDVRGRIPGDRPAVVALFTVAGGRPLTV-IATNEAARERGLKAGDLVRTAAKT 852

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           L GGGGGG+P +AQ GG N +   +AI  V
Sbjct: 853 L-GGGGGGKPDVAQGGGQNPDAVGEAIEAV 881


>gi|299782999|gb|ADJ40997.1| Alanyl-tRNA synthase [Lactobacillus fermentum CECT 5716]
          Length = 882

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 329/922 (35%), Positives = 503/922 (54%), Gaps = 77/922 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT +  F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D ++     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           + +       P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEMNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+  E  +  K  G N    V  ++I DH+RS +F I DG 
Sbjct: 238 VSIFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF     RGL LL+ V+    + +   ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 ISSEEDRFSADFKRGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W +  ++   ++++GY     + 
Sbjct: 418 GLT-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGY-----TD 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            + ++ KV+                  +   G+  ++A  GQ V+V+FDQTPFYAE GGQ
Sbjct: 469 LVVDNAKVI-----------------GLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQ 511

Query: 528 LGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + DTG  I +   +   + DVQ       + H +     ++      L +D     ++  
Sbjct: 512 VADTGQVIDNYGKVVATVKDVQHAPHQQNL-HTLELTAPIKKGARYKLVVDRARHLKIEK 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I +
Sbjct: 571 NHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWK 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI
Sbjct: 631 EIPVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV+Q   V  RV E+ 
Sbjct: 686 GLFKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQ 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVD---SKELKSVMD 814
           +     QL  A ++ +     L+  +  DV   +        I +EV      +L+ + D
Sbjct: 746 D-----QLKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMAD 800

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             ++K  S +++L   + + KA++L+ V + L     A DL +  A  +  GGGGGRP +
Sbjct: 801 DWRQKDYSDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAI-NGGGGGRPTL 858

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ+GG N     +A+   + F+
Sbjct: 859 AQAGGKNPAGISEALKLASQFM 880


>gi|227888705|ref|ZP_04006510.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227850732|gb|EEJ60818.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 892

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 348/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 17  SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 76

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   LD 
Sbjct: 77  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 132

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 133 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 189

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+ +
Sbjct: 190 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG LP
Sbjct: 248 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 307

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++ +  I++ ++
Sbjct: 308 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVEQQAFIQKVIK 367

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     GL
Sbjct: 368 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465
             ID   F++ ++ Q+ RAR     L S G+ +    ++K+K    YG            
Sbjct: 428 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 475

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              ++E    L                  IV   ++V++A  G+   ++FD+TPFYAE G
Sbjct: 476 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 515

Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581
           GQ+ D G  +     L  ++TDVQ       +H   V   IL  E     VL +D + RR
Sbjct: 516 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 572

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+
Sbjct: 573 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 632

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T + + +  +  GA AL G KY D VRVV ++       S+  CGGTH  +
Sbjct: 633 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760
           T +I +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K ++  +VV ++
Sbjct: 688 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 747

Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814
             I  + R  Q    + K Q+N     DL  + I  V  ++ I ++ D +   +L+ + D
Sbjct: 748 SSIEADLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAAQADVEGMNDLRELAD 806

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +S +++L      K   V+ +  + +     A DL + +A +  GGGGGGRP+M
Sbjct: 807 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 865

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ+GG N      AIA V
Sbjct: 866 AQAGGKNPAGLKAAIAKV 883


>gi|94986300|ref|YP_605664.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|205830044|sp|Q1IW89|SYA_DEIGD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94556581|gb|ABF46495.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 885

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 334/866 (38%), Positives = 480/866 (55%), Gaps = 77/866 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVY-- 58
             + IR  FL FF+  GH  LPS SLI   DPT +FT +GM PFK  F G     P Y  
Sbjct: 6   TTAEIREKFLSFFESKGHLRLPSHSLI-APDPTTLFTVAGMQPFKPQFMGAPAKFPGYGE 64

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + VTT QKC+R G    D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT  
Sbjct: 65  NRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKREAILWAWEFLTSP 120

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCG 170
               +D  R+Y+T+Y++D EAF  W +  GL  D I R   ++NFW     +    GPCG
Sbjct: 121 EWLGMDPARMYVTIYEDDNEAFGYWTQDVGLPEDHIHRFGADENFWPADAPAKGPNGPCG 180

Query: 171 PCSEIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI++D+G             + E  R++E+WNLVF Q+++Q+      LP  +IDTG
Sbjct: 181 PCSEIYYDRGPHYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDGGVLADLPFKNIDTG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER+A+V+Q+  + Y  D+F+ L++   +++G  YEG   V+HRV+ +H+RS +  IA
Sbjct: 241 MGLERVASVVQDVPDFYSNDVFRPLVEKVAELSGKPYEGEVSVSHRVVAEHIRSVAMTIA 300

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+  +N GRGYV+R+I+RRA  +A LLG  EP +  L+P +   MG AYPEL+  +  +
Sbjct: 301 DGVALSNTGRGYVIRKILRRASRHAYLLGLHEPTLYRLVPLVVQAMGGAYPELVTEEARV 360

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +R+E+ERF KTL+ G+  L G+L  + +  +L G+ AF LYDT+G PLD+ ++I   
Sbjct: 361 TAAIRAEEERFLKTLESGMQRLSGLLEGMERGAVLPGEEAFLLYDTYGFPLDLTKEIAEE 420

Query: 408 RGLAGIDIISFNQALEEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
            G++ ++   + ++LE  +  ARA S      L  G+ E +     E    TQF+GYD L
Sbjct: 421 YGIS-VNEAEYAESLERAQETARAASKYGKSELFGGSQEAL-----EGLPPTQFVGYDEL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                       V A+V  GE ++  ++G +  VV  +TPFYAE
Sbjct: 475 E-----------------------AQGEVLALVGAGERLDHLMAGSEATVVLSRTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GG++GDTG    +G R  + D +K   GI++H  +VE G L T    V  +    R+ +
Sbjct: 512 GGGEVGDTGVLEWEGGRGLVRDTRKTPAGIWLHDVLVEEGEL-TPGVTVRGVVSSERQAI 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +H+ATHLLH AL  +LG  V Q GS + P+ LRFD TH   +T+ EL  +E  V+  +
Sbjct: 571 QRHHTATHLLHAALRAVLGPGVRQAGSLVAPERLRFDFTHGAALTADELGQVERLVSRWV 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHV 699
             N PV  R M   +A A+GA AL G KY D VRVV VE    + D  V S  LCGG HV
Sbjct: 631 TANFPVTWREMPLAEAKAAGATALFGEKYGDTVRVVRVEGGIPFGDATVTSMELCGGAHV 690

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           + TG+I    IVS+ ++ AG+RRIEA+ G+ A + +  Q   +  ++  L  S   +  R
Sbjct: 691 TRTGDIGAFVIVSDENVAAGVRRIEALAGEAATAWVRAQLNNVHRVSGLLNTSPDTLETR 750

Query: 760 VEEIWEEYRKLQLIHAKRKLQL-----------NVEDLSCHKIADVNFMSHIISEVDSKE 808
           V  +  + R  Q   A+ + QL            V +L   K+A +      +S ++  E
Sbjct: 751 VIGLQSQLRAAQQETAQARRQLAEAQMGGASTQQVRELGGFKVAVLR-----LSGIEGGE 805

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEK 834
           L+   D L    QSG  + V I+ +K
Sbjct: 806 LRGAADKLLD--QSGADLAV-IASDK 828


>gi|170755913|ref|YP_001782179.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|205830032|sp|B1IJG7|SYA_CLOBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169121125|gb|ACA44961.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 879

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 336/916 (36%), Positives = 527/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFK+  I  AW+ +T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q     +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+
Sbjct: 297 GRGYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNIN-----TDFEGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V S V  I++  E       G +  +V   TPFYAE GGQ+
Sbjct: 467 -------------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+
Sbjct: 508 GDTGIIYNDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   
Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++MN E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I + 
Sbjct: 628 VNTKVMNIEEAKEQGAIALFDNKYKDDVRVVSV-----GNFSKELCGGTHVSNSGQIGMF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            IVSE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK + AI  V + ++
Sbjct: 860 PNKLEDAIKTVETVVE 875


>gi|21672664|ref|NP_660731.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009285|sp|Q8K9E7|SYA_BUCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21623301|gb|AAM67942.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 883

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 329/874 (37%), Positives = 504/874 (57%), Gaps = 65/874 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR +FL FF++  H ++PSSSLIP ND TL+FTN+GM  FK  F GQ+K  Y  VTT
Sbjct: 5   TNEIRQSFLNFFKEKEHVIVPSSSLIPENDSTLLFTNAGMNQFKEYFLGQKKKFYPRVTT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
           VQ C+R GGKHNDL+NVG T RHHTFFEMLGNFSF  YFK+ AI  AW+LLT  K F++D
Sbjct: 65  VQNCLRTGGKHNDLENVGYTKRHHTFFEMLGNFSFNDYFKKEAITYAWELLTSRKWFNID 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-------NDNFWSMAETGPCGPCSE 174
           + +L+I+VY++DEE +K+W+ I  +    I++I +       ++NFW M ETGPCGPC+E
Sbjct: 125 KNKLWISVYEDDEETYKIWRDIIRIPCHHIVKIGSKNNSQYDSENFWQMGETGPCGPCTE 184

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF++  +          ++ E +IEIWN+VF++F + +K +   L   SIDTGMGLER++
Sbjct: 185 IFYNYDDSNKSN-DFLKDKNESFIEIWNIVFIEFNRISKTKIVPLINKSIDTGMGLERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY ID+F+ LIQ     T +K + NNI + ++I DH+RS +FLIA+ ILP+N
Sbjct: 244 AVLQNVHSNYKIDIFQKLIQKISNFTEIK-DLNNI-SLKIIADHIRSCAFLIAENILPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           E RGYVLRRI+RRA+ +   +G        L+P+L   MG +   L + + +IEETL+ E
Sbjct: 302 EHRGYVLRRIIRRALRHGHKIGIKNNFFYKLVPSLIEIMGDSAKILRKKEKIIEETLKIE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F +TLD+GL +L+  +     ++ ++G  AF LYDT G P+D+  DI C+     ID
Sbjct: 362 EIQFSQTLDKGLKILNAEIKK-STNKTISGKTAFYLYDTFGFPIDLTSDI-CSEKNIKID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A EEQ+ R+                 S+K K+        D++     + E  K
Sbjct: 420 FKGFNIAKEEQKKRS-----------------SIKNKFYKDY--NKDIIINDTCIFEGYK 460

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      N   S+VK I  + E V     GQ   +  D+T FY E+GGQ+GD G  
Sbjct: 461 ----------KNKTKSLVKYIFIKNESVFLIYKGQTATIFLDKTSFYPESGGQIGDIGEL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + + +K  + I  H+  +  G +    S+   I++  R  + +NHSATHLLH
Sbjct: 511 YHKKSRFIVENTKKYGDTI-GHYGKLISGKIIVNDSIYSKINHVYRNAIQLNHSATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG +  Q GS ++   LRFD ++S  I  +++++IE+ +N  I  N  +  + +
Sbjct: 570 AALQKVLGKNAIQKGSLVSNTHLRFDFSYSGNINLSQIQNIENIINKKIRSNDLIKIKNL 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A    A AL   KY   VRVV ++       S  LCGGTH   TG I L  I+ +S
Sbjct: 630 SLEEAKKKKAIALFDYKYQSSVRVVFIK-----DFSIELCGGTHTKRTGNIGLFKIIEQS 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG----------NVVGRVEEIW 764
           S+ +GI+RIEA+TGQ+A  +L  +D  +++++  LK                V ++E+  
Sbjct: 685 SVSSGIKRIEAVTGQQAIDYLHIKDNDMQNISFLLKCQNSKITEKIKKIIIQVEKLEKKT 744

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++ +K + I+  +KL   + +     I  +N + +  +  D K +K ++D L+K+++  I
Sbjct: 745 DQLQKRENIYQIKKLSKKINN-----IKGINLLINTFTNYDQKSMKMIIDQLKKELKISI 799

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           I+ +  +K    +V+I VT++L++   A+ +  +
Sbjct: 800 IIFINKNKN-DFTVIIRVTKNLINYITALKIINI 832


>gi|258648967|ref|ZP_05736436.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260850577|gb|EEX70446.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 874

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/926 (37%), Positives = 501/926 (54%), Gaps = 91/926 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G  +P  +  T 
Sbjct: 3   ANEIRESFKRFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGHREPKSRRQTD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI+ A++ L     +D  
Sbjct: 63  SQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEEAIEFAYEYLVGVLKIDPA 122

Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            LY+TV++         D+EA  +W +      D II    +DNFW M ETGPCGPCSEI
Sbjct: 123 NLYVTVFEGSPDEGLSRDDEAAAIWGR--HFPEDHIINGNKHDNFWEMGETGPCGPCSEI 180

Query: 176 FFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
             D    + +    G    +++  + IEIWNLVFMQ+ ++       LP+  IDTGMG E
Sbjct: 181 HIDIRSAEEKAAVAGRELINKDHPQVIEIWNLVFMQYNRKADGTLDALPQRVIDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+  V+Q K +NYD D+F+ ++    +++G +Y       +  RVI DHLR+ SF IADG
Sbjct: 241 RLCMVMQGKQSNYDTDVFRPILNKIAELSGRRYGESTETDIAMRVIADHLRAISFSIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L  EMG AYPEL   + LI 
Sbjct: 301 QLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYRLVPTLVEEMGEAYPELAAQRDLIT 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             ++ E++ F +TL  G+ LL+GV+     G   ++ G+ AF L+DT+G PLD+ + ++C
Sbjct: 361 RVMKEEEDSFLRTLATGISLLEGVMKETKDGGSSVVKGEKAFTLFDTYGFPLDLTE-LIC 419

Query: 407 ARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           A     +D   FN  ++ Q+ RAR A S+  G       W  L E  G + F+G+D LR 
Sbjct: 420 AENGLKVDEDGFNVEMQRQKERARSAASVETGD------WVILSE--GESHFVGWDTLRQ 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  +   RKV  +K                                E+V D TPFYAE G
Sbjct: 472 ACHILRYRKVQQKKQTY----------------------------YELVIDTTPFYAEMG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD+G        ++I D  K+   + +H  + +R         +  +D   RR    
Sbjct: 504 GQVGDSGVLRSANETVEIFDT-KQENNLSIH--LTKRLPENPAAEFMAEVDEAARRSCEA 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLL  AL  +LG+HV Q GS +TP  LRFD++H + +T  EL+ +E  +N  I +
Sbjct: 561 NHSATHLLDQALREVLGAHVEQKGSLVTPTYLRFDLSHYQKVTPEELRQVERIINRRIRE 620

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++P+   R +  E+A   GA AL G KY DRVRVV  +       S   CGG HV STG 
Sbjct: 621 DIPLQDHRDVPIEEAKRMGAIALFGEKYGDRVRVVQFD------KSVEFCGGCHVRSTGR 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVG 758
           I L  IVSESS+ AGIRRIEA+T + A      Q + L  L +       + V+  N + 
Sbjct: 675 IGLFRIVSESSVAAGIRRIEAVTAEAAEEMCYRQHDTLNDLRALFNNVKDISVAVHNAIE 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIA----DVNFMSHIISEVDSKEL-KS 811
             +E+ +E  K         +QL V++L     KIA    D+  + +++ +  + +L K 
Sbjct: 735 ENDELKKEVEKF--------MQLRVKELGKELMKIAENRGDIKLLKYVVKDEWAPDLIKD 786

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGG 869
           +   L  ++   +  ++G  +  K  + +++++ L++  + NA  L R +AK++ GGGGG
Sbjct: 787 LAFQLSAQLPENLFCVIGSHQGGKPLLTVMISKQLVESKQLNAGQLVREAAKLIKGGGGG 846

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASF 895
             PH A +GG + N    A+  V   
Sbjct: 847 A-PHFATAGGKDLNGLTAAVDKVVEL 871


>gi|150004460|ref|YP_001299204.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|205829986|sp|A6L1L8|SYA_BACV8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149932884|gb|ABR39582.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
          Length = 871

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/915 (37%), Positives = 513/915 (56%), Gaps = 84/915 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ V   QK
Sbjct: 6   IRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRVADSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +D + LY
Sbjct: 66  CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKIDPKDLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPCSEI  D
Sbjct: 126 ATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCSEIHID 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     +PG+   +++  + IEIWNLVFMQF ++       LP   IDTGMG ER+ 
Sbjct: 184 SRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMGFERLV 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
             LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I DG LP
Sbjct: 244 RTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSITDGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K LIE+ +
Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTLIEKVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ + IL   
Sbjct: 364 KEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTELILREN 422

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  ++   FN  +++Q+ RAR ++  + +G     W ++KE  G T F+GYD      F
Sbjct: 423 GMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD------F 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            + +  +L                + I Q+ + +         ++V   TPFYAE+GGQ+
Sbjct: 469 TEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYAESGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG  + +   ++I D  KK   + +H  I ++     ++ ++  +D + R   + NHS
Sbjct: 507 GDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAACAANHS 563

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I +N+P
Sbjct: 564 CTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIRENIP 623

Query: 649 VVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   R +  E A   GA AL G KY D VRVV         +S   CGGTHV +TG+I +
Sbjct: 624 LTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPATGKIGM 677

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVGR-- 759
           + I+SESS+ AG+RRIEAITG +    +    + L  L +       LKV+    +    
Sbjct: 678 VRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRKYIDENA 737

Query: 760 -VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +++  EE+ K +    K +L  N ++++  K+         I  + +  +K +   L+ 
Sbjct: 738 GLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDIAFQLKG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I + + +++G     K  + ++++EDL+    NA  L R +AK++  GGGGG+PH A +
Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGV 892
           GG N +  + A+  V
Sbjct: 851 GGKNPDGLNAAVDKV 865


>gi|256379272|ref|YP_003102932.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255923575|gb|ACU39086.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 890

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/923 (37%), Positives = 505/923 (54%), Gaps = 82/923 (8%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           F E F+  GH ++PS+SL+  +DP L+F N+GMVPFK  F G+    ++  T+VQKCVR 
Sbjct: 10  FREHFENAGHAVVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEAPSPHKRATSVQKCVRT 68

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LDQRRL 125
                D+D VG+T RH TFF+M GNFSFG YFKE AI+LAWDL+TK  D      D  RL
Sbjct: 69  ----PDIDEVGKTTRHLTFFQMAGNFSFGDYFKEDAIRLAWDLVTKSQDDGGYGFDPERL 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++TVY +D+EA  LW+KI+GL  ++I R    DN+WSM   GPCGPCSEI++D+G    G
Sbjct: 125 WVTVYLDDDEAADLWQKIAGLPPERIQRRDVEDNYWSMGVPGPCGPCSEIYYDRGPEF-G 183

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMATVLQE 239
              G   + +RY+EIWNLVFMQ E+     K++  IL   P  +IDTGMG+ER+A +LQ 
Sbjct: 184 AEGGPVVDEDRYLEIWNLVFMQNERGAGGAKRDYPILGELPSKNIDTGMGVERVAFLLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N Y+ DL + +I  +E+++G KY  N  + V  RVI DH RS   L+ DG+ P NE R
Sbjct: 244 VDNVYETDLVRAVITKAEELSGRKYGDNPTDDVRFRVIADHARSGVLLVGDGVTPGNEAR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR +  +RLLG TEP++      +   MG +YPEL+     IE+ L++E++ 
Sbjct: 304 GYVLRRLLRRIVRSSRLLGVTEPVLQTFAAVVRDTMGPSYPELVSGFARIEQVLKAEEDT 363

Query: 358 FGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F +TLD G  + +   G +   G+  IL GD AF+L+DT+G P+D+  ++    GL  +D
Sbjct: 364 FLRTLDAGSRIFETAAGTVKSQGR-AILPGDKAFQLHDTYGFPIDLTLEMASEAGLT-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + + EQR+RA+A + G  +G  ++  +    + GAT+F GY  L           
Sbjct: 422 EDGFRKLMAEQRARAKADAAGKKTGHGDQTVYRELLELGATEFTGYTEL----------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          ++++ IV  G+ V+ A  G  VEVV D+TP YAE+GGQ  D G  
Sbjct: 471 ------------ASEAVLRGIVSGGKRVKSAREGDIVEVVLDRTPLYAESGGQESDAGVI 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G  L++ DVQK A  ++VH   V  G +     +   +D + R      HS TH++H
Sbjct: 519 VSGGAELEVVDVQKVARKLWVHQVRVVSGEIAEGEKVEARVDAEWRVGARQGHSGTHVVH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG    Q+GS   P  LR D   +  ++ +    IE+  N  + ++LPV     
Sbjct: 579 AALRQVLGPSALQSGSYNKPGYLRLDFAWTGGLSESTRSEIEEVSNLAVRKDLPVSVVYT 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G  Y++ VRVV +    GG  S  LCGGTHV  + +I  + ++ ES
Sbjct: 639 DMGGAQEMGAVALFGETYDETVRVVEI----GGRWSRELCGGTHVEHSSQIGPITVIGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----------W 764
           S+ +G+RR+EA  G  A  +L  +   ++++A+ LKV    V GRVE +           
Sbjct: 695 SVGSGVRRLEAYVGIEAFKYLARERALVQNVAAMLKVPDAEVPGRVEALVERLRVAEKEL 754

Query: 765 EEYRKLQLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           E+ R  QL+ +   L    L+V  +S   +A     S       + E++  M       +
Sbjct: 755 EKVRSAQLVASAGSLVSQALDVRGVSVLALALPEGTSGADVRAIASEVRGRM-----ADK 809

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMA 875
            G++ L     +K + V+            A DL   + K++       GG GGG+P +A
Sbjct: 810 PGVVALFAPDGDKVSFVVATTA-------GARDLGLAAGKLVPAFAPAVGGRGGGKPDLA 862

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     QA+A V + +++
Sbjct: 863 QGGGTNPAGVPQAVAAVLAEVER 885


>gi|319644298|ref|ZP_07998792.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|317384193|gb|EFV65166.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 871

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/915 (37%), Positives = 513/915 (56%), Gaps = 84/915 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ V   QK
Sbjct: 6   IRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRVADSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +D + LY
Sbjct: 66  CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKIDPKDLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            TV+        + D EA   W++   L  D I+    +DNFW M +TGPCGPCSEI  D
Sbjct: 126 ATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCSEIHID 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     +PG+   +++  + IEIWNLVFMQF ++       LP   IDTGMG ER+ 
Sbjct: 184 SRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMGFERLV 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
             LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I DG LP
Sbjct: 244 RTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSITDGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K LIE+ +
Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTLIEKVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + E+E F +TL+ G+ LLD  ++     GK EI +G  AF LYDT G PLD+ + IL   
Sbjct: 364 KEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTELILREN 422

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  ++   FN  +++Q+ RAR ++  + +G     W ++KE  G T F+GYD      F
Sbjct: 423 GMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD------F 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            + +  +L                + I Q+ + +         ++V   TPFYAE+GGQ+
Sbjct: 469 TEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYAESGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG  + +   ++I D  KK   + +H  I ++     ++ ++  +D + R   + NHS
Sbjct: 507 GDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAACAANHS 563

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I +N+P
Sbjct: 564 CTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKIRENIP 623

Query: 649 VVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   R +  E A   GA AL G KY D VRVV         +S   CGGTHV +TG+I +
Sbjct: 624 LTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPATGKIGM 677

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVGR-- 759
           + I+SESS+ AG+RRIEAITG +    +    + L  L +       LKV+    +    
Sbjct: 678 VRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRKYIDENA 737

Query: 760 -VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +++  EE+ K +    K +L  N ++++  K+         I  + +  +K +   L+ 
Sbjct: 738 GLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDIAFQLKG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I + + +++G     K  + ++++EDL+    NA  L R +AK++  GGGGG+PH A +
Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGV 892
           GG N +  + A+  V
Sbjct: 851 GGKNPDGLNAAVDKV 865


>gi|210633873|ref|ZP_03297888.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279]
 gi|210159042|gb|EEA90013.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279]
          Length = 884

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/894 (38%), Positives = 507/894 (56%), Gaps = 50/894 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ +L FF+  G +L PSSSL+P +DP+L+  N+GM  FK  + G++        
Sbjct: 9   TTAEIRSAYLNFFESKGCKLYPSSSLVP-DDPSLLLANAGMNQFKEFYQGKKVMKEIGAC 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVR     ND+D +G   RH +FFEMLGNF+FGG  K +A   A++L+T+ F L +
Sbjct: 68  SCQKCVRT----NDIDIIGADGRHASFFEMLGNFAFGGVTKGQACAWAYELITEVFKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY TV+ ED+E   +W+ + G+  D I R+  +DNFW+   TGPCGPCSEI+FD GE 
Sbjct: 124 DRLYFTVFTEDDETEAVWRSL-GVEPDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGEE 182

Query: 183 IPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +  G     PG   + +R++E WNLVF QF++Q       LP  ++DTGMGLERMA ++Q
Sbjct: 183 VGCGCDTCAPGC--DCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPAN 294
            K++ +D D+ + LI+  E ++G  Y  ++        R+I DH RS +FLI+DG+LP N
Sbjct: 241 HKSSFFDGDVMQSLIKLGEDISGKTYVDDDYTGASRSLRIIADHARSVNFLISDGVLPGN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ + RLLG  +  +   + A+   MG AYP L++   L++  + +E
Sbjct: 301 EGRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPSLLENVGLVKGIVEAE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF  TL+ G V LD  LS L + E L G  AF L+DT G P+D+  +I    G A +D
Sbjct: 361 EERFSTTLNNGRVYLDEQLSALAEGEQLPGSAAFMLHDTFGFPIDLTVEIAEGAGHA-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  FN  + EQ++RARA + G   G+   +W  L ++  AT+F+GYD             
Sbjct: 420 IEGFNAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFVGYD------------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                  I+      + V AIV  GE VE A +  +  VV D+TP YAE GGQ+GD G  
Sbjct: 467 ----NESIE-----GAHVLAIVVNGERVERAENAAEAAVVLDRTPLYAEMGGQMGDHGLI 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  +  +++   K  G++VH   +  G L    ++    D   R  L  NH+ATHLL 
Sbjct: 518 DTDDAQFFVSNTTAKG-GLYVHEGKL-IGALSEGDTVFAGYDLNRRGLLCRNHTATHLLD 575

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I    PVVT++M
Sbjct: 576 AALKEVLGDHVNQAGSLVSPENLRFDFTHFEAMTSEQIRAVEDLVNEQILAAQPVVTQVM 635

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A ASGA AL G KY   V  V    E     S  LCGGTH  +T E+ L  IVSES
Sbjct: 636 GIDEAKASGAVALFGEKYG-GVVRVVSVGEGAEPFSRELCGGTHAKNTAELGLFKIVSES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           S  + +RRIEA+T   A ++L  +    ++ A+ LK     V  RV  +  E R++  +L
Sbjct: 695 STGSNVRRIEAVTSTGAIAYLEERAALAETAAASLKCRVEEVPARVHALQAELREVNQKL 754

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829
             A      +    +     D+     +++E   +++ +L++V D ++ K+ S    ++ 
Sbjct: 755 KKALTGGSSDAIASAIDAAVDMGGYQLVVAELSGLEAADLRNVWDTIRGKLSSACACVLA 814

Query: 830 ISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              EK    LI    D      F+A ++ +  A ++  G GGGRP MAQ+GG N
Sbjct: 815 TVTEKGTPALIAAATDDAAAAGFHAGNVIKQIAPLV-DGRGGGRPTMAQAGGKN 867


>gi|295106657|emb|CBL04200.1| alanyl-tRNA synthetase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 882

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 316/870 (36%), Positives = 486/870 (55%), Gaps = 65/870 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQ 59
           + + IR  +L +F+  G +  PSSSLIP +DP+L+ T++GMV FK  F  Q   E P Y 
Sbjct: 5   STAEIREKYLSYFEAKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKQLEAP-YV 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVR     ND+D +G T RH +FFEMLGNFSFG YFK+     A++  T+   
Sbjct: 63  GTTTAQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGAYFKKEMCAWAYEFSTEVLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TVY +D+E  ++WK + G+  D I R+   DNFW    TGPCGPCSEI++DQ
Sbjct: 119 LPAERLYFTVYLDDDETIEIWKGL-GVPEDHISRLGEEDNFWRAGPTGPCGPCSEIYYDQ 177

Query: 180 GECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P  +   + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A ++
Sbjct: 178 GEEFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGSFVPLPKKNIDTGMGLERIAAIM 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ D+ + L+   E++TG  Y  + +  ++ R++ DH RS +F+IADGILP+NE
Sbjct: 238 QGVQSNYETDVLRSLVGVGERLTGAVYGADADADLSLRIMADHSRSVTFMIADGILPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+
Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNEYVDEIVNLMGDVYPEIVENRELARRVILSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG TL +G   LD  L+ + + E+L GD AF L+DT+G P+++ +++   RG+  +D+
Sbjct: 358 ERFGATLRQGRAFLDEALAGI-EGEVLPGDRAFTLHDTYGFPVEVTRELCGERGIE-VDM 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-------LKEKYGATQFIGYDLLRGSKF 468
             F + ++EQR RARA +    +   E  W +       + E  G T+F+GY        
Sbjct: 416 EGFGRCMDEQRERARAAN----TKDAEAAWSTYGGVMNEILEAVGPTEFLGY-------- 463

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            N   + V AIV+ G+ V+   +G++  VV D TPFYAE GGQ+
Sbjct: 464 ---------------TKNEADARVLAIVKDGQQVDVLEAGEEGRVVLDATPFYAEKGGQI 508

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV----ERGILRTEMSLVLTIDYQNRRQLS 584
           GDTG    DG+ + + D ++  +G+  H   V      G ++   ++   ID   R ++ 
Sbjct: 509 GDTGVLAEDGVVVAVLDTKEPEKGLIAHTVKVMDEPAGGRIQVGDTVHAAIDVPRRERIR 568

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATH+LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N+ + 
Sbjct: 569 RNHTATHILHWALRQVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANEKVM 628

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N PV     +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T E
Sbjct: 629 ENHPVRAYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSE 683

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I SE+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     
Sbjct: 684 IGFVKITSETSVGANLRRIEAVTSFDALAYMNRVEAELKESAEALRVPLFDVSERTAANV 743

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI------ISEVDSKELKSVMDALQK 818
           ++ ++LQ    + +  +  + +S      V            + E D+ ++++  D L+ 
Sbjct: 744 KQLKELQTKMKRNRQTIADDGISALVEGAVEAKGGYPVVFGRLPEADAGQMRNAWDVLRA 803

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
           ++      ++   K+ K ++L   T + ++
Sbjct: 804 RLGKPGAAVLATEKDGKPTLLAAGTPEAVE 833


>gi|239623766|ref|ZP_04666797.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521797|gb|EEQ61663.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 887

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 327/853 (38%), Positives = 486/853 (56%), Gaps = 48/853 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVVGLDAD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ A +I +    DNFW    +GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLEDDEAFDIWNKEIGIPAGRIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEQY 188

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RYIE+WN VF QF+         L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGSPDCTVGCECDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    +++  +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCELSHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     +  L   +       YPEL + +++I + L  E+++F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAELSRTVIELCKDGYPELEEKQVMIFKVLSEEEDKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL++L  +   + K+    L+G  AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 369 KTIDQGLMILGEMEEEMQKEGSRTLSGTNAFKLYDTYGFPLDLTKEILEEKGY-GVDEDG 427

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F+ A++EQ+ +AR A       G    ++ S+      T+F+GYD L             
Sbjct: 428 FDAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSI-TTEFVGYDKL------------- 473

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    + VS I   +  + E+V+    GQK  V+  QTPFY   GGQ GD G  + 
Sbjct: 474 ---------SAVSRIT-VLTTEDELVQALTDGQKGTVIVGQTPFYGTMGGQQGDVGVIVN 523

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    ++ D      G   H  I+ +G+L+ + S+ L++  +NR  +  NHSATHLL  A
Sbjct: 524 ENGEFKVEDTIHLQGGKVGHVGIMTKGMLKVDDSVTLSVCGKNRALICKNHSATHLLQKA 583

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +    LRFD TH   +T  E+K +E  VN  I  +LPVVT IM  
Sbjct: 584 LRLVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPEEIKKVEALVNKEIQASLPVVTEIMTL 643

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  +GA AL G KY D VRVV +     G  S+ LCGGTHV++T  I    I+SE+ I
Sbjct: 644 EEAKKTGAMALFGEKYGDSVRVVEM-----GDFSTELCGGTHVANTNNIASFKILSEAGI 698

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+T +    +    +  L   A   K +   ++ ++  + +E + L   + K
Sbjct: 699 AAGVRRIEALTSEGLMKYYEEMEAGLHEAAKAAKTTPAALISKIHALLDEIKSLNSENEK 758

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L  + L        ++  V  ++  +S VD   L+S+ D L+ K+  G+++LV   
Sbjct: 759 LKSRLANDSLGDVMSQVKEVNGVKVLASRVSGVDMNGLRSLGDQLKDKLGDGVVVLVS-E 817

Query: 832 KEKKASVLIVVTE 844
           ++ K +++   T+
Sbjct: 818 QDGKVNLMATATD 830


>gi|148543768|ref|YP_001271138.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|227363252|ref|ZP_03847384.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|325682140|ref|ZP_08161658.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|148530802|gb|ABQ82801.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|227071708|gb|EEI09999.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|324978784|gb|EGC15733.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 884

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 337/929 (36%), Positives = 518/929 (55%), Gaps = 85/929 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT +  F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G N    +  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++     K   ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY       
Sbjct: 418 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                          DLT   + ++  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 467 --------------TDLTVDNAKVI-GLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 511

Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576
           Q+ DTG  I + G ++ ++ DVQ         HA  ++ + R E++          L +D
Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPIKKGARYKLVVD 562

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E
Sbjct: 563 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 622

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + VN+ I + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG
Sbjct: 623 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 677

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
            HV +T E+ L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   
Sbjct: 678 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 737

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810
           V  +VE +  E ++ Q  +   + ++  +  +     +      S I +EV      +L+
Sbjct: 738 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 797

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + DA + K  S +++L   S + KA++L+ V++D       A DL +  A  +  GGGG
Sbjct: 798 QLADAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 855

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP++AQ+GG N     +A++    +L K
Sbjct: 856 GRPNLAQAGGKNPAGIKEALSQAKGYLDK 884


>gi|329666846|gb|AEB92794.1| alanyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 882

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 347/918 (37%), Positives = 515/918 (56%), Gaps = 81/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG LP
Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465
             ID   F++ ++ Q+ RAR     L S G+ +    ++K+K    YG            
Sbjct: 418 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              ++E    L                  IV   ++V++A  G+   ++FD+TPFYAE G
Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505

Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581
           GQ+ D G  +     L  ++ DVQ       +H   V   IL  E     VL +D + RR
Sbjct: 506 GQVADHGEILNQNGELVARVADVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  NH+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+
Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + +PV T + + +  +  GA AL G KY D VRVV ++       S+  CGGTH  +
Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760
           T +I +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K ++  +VV ++
Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814
             I ++ R  Q    + K Q+N     DL  + I  V  ++ I  + D +   +L+ + D
Sbjct: 738 SSIEDDLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAVQADVEGMNDLRELAD 796

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +S +++L      K   V+ +  + +     A DL + +A +  GGGGGGRP+M
Sbjct: 797 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ+GG N      AIA V
Sbjct: 856 AQAGGKNPAGLKDAIAKV 873


>gi|325280523|ref|YP_004253065.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324312332|gb|ADY32885.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 877

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 337/910 (37%), Positives = 493/910 (54%), Gaps = 75/910 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G   P ++ V   
Sbjct: 4   AEIRQKFLDFFESKGHTIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNINPKHRRVADS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ LT    LD+ R
Sbjct: 64  QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEDAIAFAWEFLTGVMGLDKNR 123

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY TV+        + D EA K+W  ++ LS D+I+     DNFW M + GPCGPCSEI 
Sbjct: 124 LYATVFEGSKEDGLEGDAEARKIW--MNYLSEDRILFGNKKDNFWEMGDMGPCGPCSEIH 181

Query: 177 FD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            D    +   +  G    +++    IEIWNLVFMQ+ ++       LP   +DTGMG ER
Sbjct: 182 IDLRPEEERKLKSGRELVNQDNPLVIEIWNLVFMQYNRKADGSLENLPNHHVDTGMGFER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +   +Q KT+NYD D+F  +I    +++G+KY    +  V  RVI DHLR+ SF I DG 
Sbjct: 242 LCMAVQGKTSNYDTDVFTPIIDEISRLSGLKYGVSHDADVAMRVIADHLRTISFSITDGQ 301

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L   MG  YPEL+  + LIE+
Sbjct: 302 LPSNVKAGYVIRRILRRAVRYAYTYLDQKEAFMYRLVPVLIEVMGKHYPELVAQQELIEK 361

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN--GDVAFKLYDTHGLPLDIMQDILCA 407
            +R E+  F +TLD+G+ LLD ++     ++ L   G+VAF+LYDT+G PLD+ + IL  
Sbjct: 362 VIREEENAFLRTLDKGIKLLDRIIEKTKAEDFLTIPGNVAFELYDTYGFPLDLTELILRE 421

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +GL  ++   F   +E Q+ R+R+      S      W  L +     +F+GYD      
Sbjct: 422 KGLV-VNRREFKAEMEAQKERSRS-----ASSVDTDDWIELIDD-DVQEFVGYDYTEVEV 474

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            +   RKV+ +                                  +VF+ TPFY E GGQ
Sbjct: 475 KITRYRKVVTKNKTF----------------------------YHLVFNITPFYGEGGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G  IG+   ++I D  KK  G+ +H  + E+       + +  +D   R   + NH
Sbjct: 507 VGDSGVLIGEKETIRIIDT-KKENGLTIH--LAEKMPEDVTQTFIAKVDEHKRVLTANNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL +AL  +LG HV Q GS ++ + LRFD +H + +T  EL  +   VN +I  N+
Sbjct: 564 SATHLLDYALRKVLGKHVEQKGSYVSDEHLRFDFSHFQKVTDEELAEVAAIVNRLIRMNI 623

Query: 648 PVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P+   R +    A A GA A+ G KY D VRV+          S  LCGGTHV +TG+I 
Sbjct: 624 PLEEHRSVPMAKAQAMGALAIFGEKYGDLVRVIKYG------ESVELCGGTHVPATGQIG 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I+SESS+ AG+RRIEAIT  +A  ++      ++ +    K S  N++  V+ + EE
Sbjct: 678 FFKILSESSVSAGVRRIEAITADKAEEYINNSFAIIREMEKMFK-SNKNLMECVKNVLEE 736

Query: 767 ---YRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
               +K     AK  L+L  E L   K    D+N +   +S + + + K +   L+ + +
Sbjct: 737 NEGLKKETEKFAKESLRLLKERLKNEKKVYRDINLIITNLS-IPAAQAKDIAFQLKGEYE 795

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             +I + G     K  + ++++  + + +  NA  + R +A+ +  GGGGG+P  A +GG
Sbjct: 796 K-VIFIAGGVNAGKPHLTVMISNSIAEDYGLNAGQIVREAAQEI-KGGGGGQPFFATAGG 853

Query: 880 PNGNKADQAI 889
                 ++AI
Sbjct: 854 AYPEGIEKAI 863


>gi|253681881|ref|ZP_04862678.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561593|gb|EES91045.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 879

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 340/912 (37%), Positives = 524/912 (57%), Gaps = 60/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+  T+   + + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181
           +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D GE
Sbjct: 122 KLYVTIYLDDDEAYDIWTTKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                      + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q   
Sbjct: 181 IKSVEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQGVE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +++D  + ++     +    Y  +++  ++ R+I DH+RS S +I+D +LP+NEGRGY
Sbjct: 241 TIFEVDTIRSILDKVANLANTTYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  ++ ++    G AYPEL + K  I++ +  E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGIQGTFLHKIVNSVIENSGDAYPELKEKKDYIKKVISIEEERFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L   +  L K+   +L+G+  FKLYDT+G PL++ ++IL  + +  +D+  
Sbjct: 361 ETIDSGMEILKEYIEELEKENKNVLSGEKVFKLYDTYGFPLELTEEILEEKNIT-VDMDG 419

Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           FN+ ++ QR RARA  S     GT  K+  ++  +   T+F GY  L             
Sbjct: 420 FNEEMKVQRERARAARSESTYMGTDVKVIDTIPSEI-ETKFDGYKNLE------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      + S +K I++  +  +   +G+K  +V D+TPFYAE GGQ+GD G    
Sbjct: 467 -----------LQSKIKVIIKNDDFADCIKAGEKGIIVTDKTPFYAEMGGQIGDKGTISA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG   ++ + +    G  +H   V  G ++    ++L +D   R  +S NHS THLLH A
Sbjct: 516 DGFVAKVENCKNNIGGKIIHFVEVIEGNIKLGDEVLLEVDRVRRDNVSKNHSTTHLLHAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q+GS +  D LRFD TH + +T  EL  +ED VN+II++   V T  M  
Sbjct: 576 LREVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNNIISKVYEVETNEMTI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A  SGA AL   KY D+VRVV +     G  S  LCGGTH+S+ G+I L  IVSES I
Sbjct: 636 EEARQSGAMALFDEKYGDKVRVVKI-----GNFSVELCGGTHISNIGKIGLFKIVSESGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQL 772
            AGIRRIEA+TG +A   +  +   LK +A  LK S+ +++ R+     E+ E+ +++  
Sbjct: 691 AAGIRRIEAVTGTKALEFIKDKSNLLKEVAELLKCSEKDILNRLNQQSLELKEKEKEIAS 750

Query: 773 IHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           + +K       ++  NV+++   K+A  N     + +VD + L+++ D ++ K+ SG+++
Sbjct: 751 LKSKLASGSEDEILNNVKEIKGVKLAVAN-----LKDVDGEALRNLGDKIKNKLGSGVVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G   E K   + + ++D++ +  +   + R  AK+  GGGGGGRP MAQ+GG    K 
Sbjct: 806 L-GSEVEGKVQFIAMASKDVVSKGVHCGTIVREIAKI-AGGGGGGRPDMAQAGGRLPEKL 863

Query: 886 DQAIAGVASFLK 897
             A+  V + ++
Sbjct: 864 KDAMNAVENIME 875


>gi|184153174|ref|YP_001841515.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|183224518|dbj|BAG25035.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
          Length = 885

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 337/929 (36%), Positives = 518/929 (55%), Gaps = 85/929 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 9   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT +  F  
Sbjct: 69  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 124

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 125 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 180

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 181 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 238

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G N    +  ++I DH+R+ +F I DG 
Sbjct: 239 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 299 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++     K   ++G  AFKLYDT+G P+++ ++     
Sbjct: 359 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 418

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY       
Sbjct: 419 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 467

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                          DLT   + ++  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 468 --------------TDLTVDNAKVI-GLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 512

Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576
           Q+ DTG  I + G ++ ++ DVQ         HA  ++ + R E++          L +D
Sbjct: 513 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPIKKGARYKLVVD 563

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E
Sbjct: 564 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 623

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + VN+ I + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG
Sbjct: 624 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 678

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
            HV +T E+ L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   
Sbjct: 679 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 738

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810
           V  +VE +  E ++ Q  +   + ++  +  +     +      S I +EV      +L+
Sbjct: 739 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 798

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + DA + K  S +++L   S + KA++L+ V++D       A DL +  A  +  GGGG
Sbjct: 799 QLADAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 856

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP++AQ+GG N     +A++    +L K
Sbjct: 857 GRPNLAQAGGKNPAGIKEALSQAKGYLDK 885


>gi|170078279|ref|YP_001734917.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|205830236|sp|B1XP68|SYA_SYNP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169885948|gb|ACA99661.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 877

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/906 (37%), Positives = 507/906 (55%), Gaps = 72/906 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ FLEFF +  H +LPS+SL+P  DPT++ T +GM+PFK IF GQ+       TT 
Sbjct: 11  SEIRSKFLEFFNQRQHPILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQDAPSPRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F LD + 
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFQLDPKN 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V+ ED+EAF++W+   G++  +IIR+   DNFW    TGPCGPCSE+++D    + 
Sbjct: 126 IVVSVFREDDEAFEIWRDKVGVNPKRIIRMGEEDNFWKSGPTGPCGPCSELYYDFKPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GDDNIDLEDDTRFIEYYNLVFMQYNRDAEGHLTPLQNKNIDTGMGLERMAQILQQVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + +  G+ YE  +    V+ +VI DH+RS   +IADGI  +N  RGYVL
Sbjct: 245 ETDLIFPIIETAAKAAGIHYEKADEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G     +  +         +AYP   + +  I++ L  E+  F KT
Sbjct: 305 RRLIRRVVRHGRLIGIDGNFINQVAETAIQLSEAAYPNTRERESFIKQELEREENNFLKT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  +++   +++ ++G  AF L+DT G P ++ Q+I    GL  +D   +   
Sbjct: 365 LERGEKLLADIIAK--EEKQISGVDAFTLFDTFGFPFELTQEIAEENGLT-VDAEGYQAE 421

Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +++Q+ R++A   ++ L   T +     L E    T F+GY                   
Sbjct: 422 MKKQQERSKAAHETIDL---TVQGSLDELAEHIHPTAFLGY------------------- 459

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
              DL + V   ++A++  G  VE A +G  V+++ +QTPFYAE+GGQ+GD G   GD +
Sbjct: 460 --TDLQSQVK--IEAVLVDGHRVETAEAGVVVQLICNQTPFYAESGGQIGDRGYFSGDQL 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVHH  VERG L    ++  TID   RR+   NH+ATHLL  AL  
Sbjct: 516 VVRINDVQKES-GFFVHHGKVERGSLTVGDTVNATIDRACRRRAQANHTATHLLQAALKN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+AEL  IE  +N  IA+       +M   +A
Sbjct: 575 IVDDSISQAGSLVDFDRLRFDFNCPRALTAAELTQIEAQINTWIAEAHEGQVAVMPIAEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY + VRVV       GV S  LCGGTHV +T EI L  I+SE+ I +G
Sbjct: 635 KAKGAVAMFGEKYGEEVRVVDFP----GV-SMELCGGTHVKNTAEIGLFKIISETGISSG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  +D+ +K L    K     +  RVE I  E R  Q    K K 
Sbjct: 690 IRRIEAVAGPAVLEYLKVRDQVVKDLGDKFKAKPEEITERVENIQAELRNTQKELEKVKA 749

Query: 780 QLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +   E L      + +   +   + ++D+K L++  + LQ+K+    ++L    ++ 
Sbjct: 750 ELAIAKSEALVSQAETVGEFQILVENMGDLDAKALQTAAERLQQKLGEAAVVLGSTPEDG 809

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG-----------RPHMAQSGGPNGN 883
           K S++   +E +              KV  G   GG           RP++AQ+GG + +
Sbjct: 810 KVSLVAAFSEGIYK----------GKKVQAGKFIGGIAKLCGGGGGGRPNLAQAGGRDAS 859

Query: 884 KADQAI 889
           K  +A+
Sbjct: 860 KLPEAL 865


>gi|255690436|ref|ZP_05414111.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260623884|gb|EEX46755.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 872

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/923 (37%), Positives = 508/923 (55%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++  +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSDTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN+ +++Q+ RAR ++  + +G     W +LKE  G T+F+GY  
Sbjct: 418 LILRENGMI-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIRQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F       +  
Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNTPDLGIAI 730

Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           R        +++  E++ K +    K +L  N+++++  K+  +   + + +EV    +K
Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAALKERLLKNIQEVNGVKV--IKLCAPLPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G +   K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVATGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +    A+  V
Sbjct: 844 GQPHFATAGGKNADGLPAAVEKV 866


>gi|227544204|ref|ZP_03974253.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908199|ref|ZP_07125665.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227185840|gb|EEI65911.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894626|gb|EFK87982.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 895

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 337/929 (36%), Positives = 518/929 (55%), Gaps = 85/929 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 19  NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT +  F  
Sbjct: 79  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 135 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 190

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 191 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G N    +  ++I DH+R+ +F I DG 
Sbjct: 249 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 308

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 309 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 368

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++     K   ++G  AFKLYDT+G P+++ ++     
Sbjct: 369 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 428

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY       
Sbjct: 429 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 477

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                          DLT   + ++  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 478 --------------TDLTVDNAKVI-GLAHDGQQADEARPGDKNIELIFDVTPFYAEMGG 522

Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576
           Q+ DTG  I + G ++ ++ DVQ         HA  ++ + R E++          L +D
Sbjct: 523 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPIKKGARYKLVVD 573

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E
Sbjct: 574 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 633

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + VN+ I + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG
Sbjct: 634 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 688

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
            HV +T E+ L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   
Sbjct: 689 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 748

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810
           V  +VE +  E ++ Q  +   + ++  +  +     +      S I +EV      +L+
Sbjct: 749 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 808

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + DA + K  S +++L   S + KA++L+ V++D       A DL +  A  +  GGGG
Sbjct: 809 QLADAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 866

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP++AQ+GG N     +A++    +L K
Sbjct: 867 GRPNLAQAGGKNPAGIKEALSQAKGYLDK 895


>gi|72162469|ref|YP_290126.1| alanyl-tRNA synthetase [Thermobifida fusca YX]
 gi|83305862|sp|Q47N66|SYA_THEFY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71916201|gb|AAZ56103.1| alanyl-tRNA synthetase [Thermobifida fusca YX]
          Length = 889

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 356/920 (38%), Positives = 516/920 (56%), Gaps = 79/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   FL FF+KNGH ++PS+SLI   DPTL+  N+GMVPFK  F GQ  P Y   T+V
Sbjct: 4   AEIARRFLAFFEKNGHTVVPSASLI-AEDPTLLLVNAGMVPFKPYFLGQRTPPYPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D+D VG+T RH +FF+MLGNFSFG YFKE+AI LAW+LLT       F 
Sbjct: 63  QKCVRT----IDIDEVGKTTRHASFFQMLGNFSFGDYFKEKAIPLAWELLTTSVADGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL++TVY +D+EA  +W++  GL  ++I R    DNFWSM   GPCGPCSEI+FD+
Sbjct: 119 FDPERLWVTVYLDDDEAATIWREKVGLPEERIQRRGKADNFWSMGVPGPCGPCSEIYFDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G   + +RY+E+WNLVFMQFE+     K++  IL   P  +IDTGMGLERM
Sbjct: 179 GPEY-GAEGGPVADEDRYLEVWNLVFMQFERGEGSGKEDYPILGELPSKNIDTGMGLERM 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D    +++ + ++TG  Y  N    V+ RVI DH+R+++ L+ADG+ 
Sbjct: 238 AAILQGVDNIYETDTLGRILRRAAELTGTTYGENERADVSLRVIADHVRTATMLVADGVR 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEET 350
           P NE RGYVLRRI+RR++   RLL   E   MH L A+  + MG  YPEL      I   
Sbjct: 298 PGNEKRGYVLRRILRRSIRNLRLLSGDESFHMHDLTAVAIDAMGDQYPELRADADKIHSI 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + +E++ F  TL  G  L +  +    +    + +G  AF+L+DT+G P+D+  ++    
Sbjct: 358 IDAEEKNFADTLRAGTTLFNRAVRRTKETGGTVFSGADAFQLHDTYGFPIDLTLEMAAEH 417

Query: 409 GLAGIDIISFNQALEEQRSRAR--AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           GL  +D  +F+Q ++ QR  A+  A +  LG+     ++ +L E  G T+F+GY     +
Sbjct: 418 GLK-VDEETFHQLMQRQRETAKRDAQAKKLGNADI-SVYGNLLETGGPTEFLGY-----T 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
               E R                  V  I+  GE    A  G +VE+V D+TPFYAE+GG
Sbjct: 471 DSESEAR------------------VLGIIVNGESTGAARKGDQVELVLDRTPFYAESGG 512

Query: 527 QLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G    DG  +  + DVQK  +G+FVH   V  G +  + ++   ID   R  +S 
Sbjct: 513 QLADKGTITVDGRGVVDVEDVQKPIQGLFVHRGTVREGEVVVDDTVHAAIDTGRRASVSR 572

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H AL   LG    Q GS   P  LRFD T  KP+ + E+  +E+ VN+++A+
Sbjct: 573 SHSATHLIHSALRNTLGPSAGQAGSENQPGRLRFDFTSDKPLDATEIAQVEEEVNEVLAR 632

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGE 704
           N+ V       ++A+  GA A+ G KY +RVRVV + EY      S  LCGGTHV++TG+
Sbjct: 633 NIEVQYLETTLDEALRMGALAMFGEKYGNRVRVVDMTEY------SRELCGGTHVAATGQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA------RSHLMGQ-DEKLKSLASFLKVSQGNVV 757
           + L+ ++ ESS+ +G+RR+EA+ G  A       S L+GQ  E+LK+    L     ++V
Sbjct: 687 LGLVKVLGESSVGSGVRRVEALVGLDALRRVSTESALVGQLSEQLKAPREELPQRIDSLV 746

Query: 758 GRV---EEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKEL 809
            R+   E+  E  R  Q++ A  KL  +  D     +  H++ D           D ++L
Sbjct: 747 SRLRAAEKEIERLRAAQVLQAAGKLAESARDHGNSRVVTHRVEDGTTAD------DMRKL 800

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
              +     + +  ++ + G+  ++   V+ +  E       A +L  ++A+ L GGGGG
Sbjct: 801 ALDVRGRLGEDRPAVVAIAGVPSDRPVVVVAINKEAQQAGLKAGELVGVAARAL-GGGGG 859

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           GRP +AQ GG +    D A+
Sbjct: 860 GRPDIAQGGGSDVTAIDTAL 879


>gi|81428001|ref|YP_395000.1| alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123564683|sp|Q38YN9|SYA_LACSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78609642|emb|CAI54688.1| Alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 878

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/915 (37%), Positives = 516/915 (56%), Gaps = 67/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF++ GH++ PS+SLIP  DPTL++ NSG+   K  F G+  P    +T  
Sbjct: 7   AQVRQMFLDFFKEKGHDVEPSASLIPDEDPTLLWINSGVATLKKYFDGRVVPNNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFKEDAIPWAWEFLTSDKWIGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D++A ++W +  GL+ D+II +   DNFW + E GPCGP SEIF+D+G+ 
Sbjct: 123 EKLYVTVYPKDKDAHRIWHEKVGLAEDRIIEV--EDNFWDIGE-GPCGPDSEIFYDRGQS 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+E+WN+VF +F      E    P  +IDTGMGLER+ +
Sbjct: 180 FNNVSEDDPENYPGG--ENERYLEVWNIVFSEFNHLPNGEYVEQPHKNIDTGMGLERLVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           V+QE   N++ DLF  LI+A+  ++  K  G N    ++ ++I DH R+ +F I DG +P
Sbjct: 238 VIQEAPTNFETDLFMPLIEATAAMSDHKQYGQNAADDISFKIIADHARAVTFAIGDGAMP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           ANEGRGYVLRR++RRA+   + LG  +  M  L+P +   M S YP++++ K  IE+ +R
Sbjct: 298 ANEGRGYVLRRLIRRAILNGKKLGINDAFMYKLVPIVGEIMHSYYPDVLEQKDFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +TL+ GL LL+  +  +  ++E  +NG  AFKL+DT G P+++  +     GL
Sbjct: 358 SEEDRFRETLNDGLRLLNQTIEAVKAENETEINGADAFKLFDTFGFPIELTTEYAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F + +  Q++RAR A S     G+  ++  ++K K   ++F GY     S+  
Sbjct: 418 T-VDQAGFEKEMAAQKARARNARSDEQSMGSQNEVLLNIKTK---SEFTGY-----SELE 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            E R              ++ I++   +Q     E+V+    ++VF+ TPFYAE GGQ+ 
Sbjct: 469 TESR--------------LADIIQDNAEQ-----ESVTTGVAQLVFEATPFYAEMGGQVA 509

Query: 530 DTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    +   +  ++TDVQ    G  +H   V + ++ + +   L++D   R  +  NH
Sbjct: 510 DQGIIKNLAGQVVAEVTDVQYAPNGQPLHTVKVLKEMI-SGVHYTLSVDPTFRGGVVKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L  +E  VND I   L
Sbjct: 569 TATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNLGQVTPDQLAEVEQIVNDKIWAAL 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + E A   GA AL   KY   VRVV +     G +S  LCGGTH ++T ++ L
Sbjct: 629 PVNTVETDIETAKQMGAIALFTEKYGKTVRVVQI-----GDYSMELCGGTHANNTSDLGL 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I SES I AG RRIEA+T + A  +L  +   L  LAS LKV+Q  ++  +++++  +
Sbjct: 684 FKITSESGIGAGTRRIEAVTSKAAFKYLNDKQVLLNELASELKVAQTKDLPKKIQQLQAD 743

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK-----ELKSVMDALQKKIQ 821
            +  Q  + + K +   E         V      +   D+K     EL+ + D  Q+K  
Sbjct: 744 LKAEQKENEQLKAKFAQEQAGNVFENVVEAGQWRLVAADAKVAGMNELRQLADQWQQKQI 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L  ++ +K + ++ V  + +     A DL +  A ++ GGGGGGRP MAQ+GG N
Sbjct: 804 SDVLVLATVAGDKVSLIVAVAPDAIKAGIKAGDLIKQIAPLV-GGGGGGRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFL 896
                 A+A    FL
Sbjct: 863 PAGIPDALAAAKEFL 877


>gi|319935502|ref|ZP_08009937.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809533|gb|EFW05950.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 869

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 335/913 (36%), Positives = 506/913 (55%), Gaps = 75/913 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL++F+  GH + P +SLIP NDPTL++ N+G+   K  F G E+P    +   
Sbjct: 7   NQVRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEQPACHRIVNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT       D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEDAIPFAWEFLTSPEWIGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181
            +LY+TVY +D++A+++W ++  +    I++  T+ NFW + E GP GP SEIF+D+G E
Sbjct: 123 EKLYVTVYTDDDDAYRIWTEVCHVDPSHILK--TDGNFWEIGE-GPGGPDSEIFYDRGVE 179

Query: 182 CIPGGLPGS----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234
             P GL         E +RYIEIWN+VF QF+     +++E   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPDGLGEKLFFEELENDRYIEIWNVVFSQFDCNPTIDRKEYKELPQKNIDTGMGLERLV 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +++Q    N+D D F  +I A+E++T ++YE N +  +RVI DH+R+ +F ++DG L  N
Sbjct: 240 SIIQGGETNFDTDFFLPIIHATEEMTNVRYEDNKMA-YRVIADHIRTVTFALSDGALFDN 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRRI+RRA+ Y + +G     M  L+  +   M   Y  L      +   ++ E
Sbjct: 299 AGRGYVLRRILRRAVRYGKKIGIDHSFMYKLVYVVADIMKEFYDYLPAKADYVSGLVKKE 358

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F KTL  G  LL+ +L     D+ L+G  AFKLYDT+G PL++  +I    G   +D
Sbjct: 359 EEAFHKTLSNGEKLLNQMLKKT-IDQQLDGKDAFKLYDTYGFPLELTVEIAEETGFT-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++ Q+ RAR       S +++K              + +D    S+F+  D  
Sbjct: 417 EAGFKAEMKAQQVRARNARGDNESMSSQK-----------PDLMAFDT--PSQFVY-DHS 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            +  K      +GV      I  QGEI            + DQT FYAE GGQ  DTG  
Sbjct: 463 PITAKVIATFIDGVK--CDEITTQGEI------------ILDQTTFYAEMGGQCADTGTM 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   L +T V +      +H   ++ G ++    L+L +D   R  +  NH+ATHLL 
Sbjct: 509 SNETTLLDVTYVSRAPRLQHLHVIKIKNGSVKVGDELILKVDAHKRALIQNNHTATHLLQ 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG HVSQ+GS +  + LRFD TH + +T  E++ +ED VN+ I   L V    M
Sbjct: 569 KALKTVLGEHVSQSGSYVDAERLRFDFTHPQKMTDEEIRKVEDQVNEQIFNGLNVQIEFM 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           ++++A+ SGA AL   KY D+VRVVSV     G +S  LCGG HVS++ +I L  I SE 
Sbjct: 629 SKDEAMHSGAMALFDEKYGDQVRVVSV-----GDYSKELCGGCHVSNSAQIALFKIESEE 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR----- 768
           S+ +GIRRIEA+T Q+A   +   +E +++++   K+   N +V +V +  +E       
Sbjct: 684 SVGSGIRRIEAVTAQKAYQSMKKSEETIQTISELFKLKNRNEIVEKVTQFIDETHEVKKE 743

Query: 769 ------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                 KL  I AK K + N+E+++      V F+ ++    D+   K +   L+ ++ +
Sbjct: 744 RDQYLDKLNSIEAKEKSK-NIEEING-----VQFL-YVSESKDASIAKQMTFELRDQLTN 796

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G+++LV    E K S  + +T  ++   + A DL ++  +V  GG GGG+P  AQ G P+
Sbjct: 797 GVVVLVS-EYEGKTSYFVGLTASMVKNGYKAGDLVKMINEVT-GGRGGGKPDFAQGGCPS 854

Query: 882 GNKADQAIAGVAS 894
               + AI  + S
Sbjct: 855 QEHINDAIKQIKS 867


>gi|288924681|ref|ZP_06418618.1| tRNA ligase [Prevotella buccae D17]
 gi|315607688|ref|ZP_07882682.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|288338468|gb|EFC76817.1| tRNA ligase [Prevotella buccae D17]
 gi|315250624|gb|EFU30619.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 881

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 339/927 (36%), Positives = 512/927 (55%), Gaps = 87/927 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P  + 
Sbjct: 1   MMTANEVRESYKKFFETKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KD 59

Query: 61  VTTV--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           V  V  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L    
Sbjct: 60  VRRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVL 119

Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L+   LY+TV++         D+EA + W K   + AD II    +DNFW M +TGPCG
Sbjct: 120 HLNPEDLYVTVFEGSPEENLSRDDEAARFWGK--HVPADHIINGNKHDNFWEMGDTGPCG 177

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D +       +PG    +++  + IEIWN+VFMQ+ ++       LP   IDT
Sbjct: 178 PCSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDT 237

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVD 277
           GMG ER+  +LQ K +NYD D+F+ +I+  E++TG+KYE          N  V  RV+ D
Sbjct: 238 GMGFERLVRMLQGKHSNYDTDIFQPIIKEIERLTGLKYEDAHGDSRTQTNIDVAMRVVAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           HLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L  EMG+A
Sbjct: 298 HLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNRKEAFMYKLVPVLVQEMGAA 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDT 393
           YPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   GK E L+G  AF+L+DT
Sbjct: 358 YPELPAQQELIARVMKEEEDSFLRTLDKGINLLNGDMDELKAHGKTE-LDGAAAFRLFDT 416

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G PLD+ + ++C      +D   F++ +E+Q++RAR  ++ + +G     W  +KE  G
Sbjct: 417 YGFPLDLTE-LICRENGYTVDGKGFDEEMEKQKARARNAAV-VENGD----WEVVKE--G 468

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
             +F+GYD       +   RKV  +K                                E+
Sbjct: 469 EQEFVGYDYTEYECHILRYRKVTQKKNTF----------------------------FEL 500

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V D TPFY E GGQ+GDTG  +     +++ D  K+     +H  IV++         + 
Sbjct: 501 VLDHTPFYGEMGGQVGDTGVLVSADETVEVIDT-KRENNQSIH--IVKQLPKDIRADFMA 557

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   R   + NH+ATHLL +AL  +LG HV Q GS ++ D LRFD +H + +T  EL+
Sbjct: 558 CVDIDKRDGSAANHTATHLLDYALKQVLGDHVEQKGSYVSADTLRFDFSHFQKVTDEELR 617

Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            +E  VND+I Q+ P+   R    E+A A GA AL G KY D+VRVV          S  
Sbjct: 618 QVERIVNDMIRQDFPLDEHRDTPLEEAKALGAIALFGEKYGDKVRVVRFG------PSCE 671

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            CGG H  STG I    I+ ESS+ AGIRRIEA+TG+     +    + L  + +    +
Sbjct: 672 FCGGIHAKSTGRIGFFKIIGESSVAAGIRRIEALTGKACEEAIYALQDTLTDVRALFNNA 731

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI-----ISEVDSK 807
           + ++ G V +  EE+  ++    K + Q  VE L    +  V  M+ +     + E++  
Sbjct: 732 K-DLKGVVGKYIEEHDAMKKDIEKFRAQ-TVERLKDELVKRVKLMNGVQVVRAVIEMEPS 789

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGG 865
             K ++  +++ +   ++ ++G    +K  + +++++D++     NA  + R +AK++  
Sbjct: 790 AAKDLVFKIREALPENLLCVIGSKAHEKPMLSVMLSDDMVKGHSLNAGQMIREAAKLI-Q 848

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH AQ+GG N +  + A+  V
Sbjct: 849 GGGGGQPHYAQAGGKNIDGLNAAVDKV 875


>gi|302866800|ref|YP_003835437.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302569659|gb|ADL45861.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 893

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/914 (37%), Positives = 505/914 (55%), Gaps = 80/914 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I+  FL  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   T
Sbjct: 2   KTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL TK      
Sbjct: 62  SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAGG 117

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD  R++ TVY +D+EA+ +W+  +G+ A++I+R    DNFWSM   GPCGPCSE+++
Sbjct: 118 FGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELYY 176

Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGL 230
           D+G     G  G  E  E RY+E WNLVFMQFE+     +E F     LP  +IDTGMGL
Sbjct: 177 DRGPAY--GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  K ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           +S  LI DG+ P+NEGRGYVLRRIMRRA+   RLLGY +  +  LLP     M  +YPEL
Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397
            +    I +   +E++ F  TL  G  +LD  ++     GK   L+GD AF+L+DT+G P
Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGK-AALSGDKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456
           +D+  +I   +GL  +D   F + + +QRSRA+A +    +G T+   + S+ +  G  +
Sbjct: 414 IDLTLEIAAEQGLQ-VDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GY     ++  +E R                  V+A++  G  V  AV G  +E+V D
Sbjct: 473 FTGY-----TELSRESR------------------VRALLSGGAAVSAAVEGDTIELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R+  +    ID
Sbjct: 510 TTPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L  +E
Sbjct: 570 VSRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+++  +L V   + ++E+A   GA AL G KY +RVRVV V     G ++  LCGG
Sbjct: 630 QQVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGG 684

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+ + ++ L+ I+SE+S+ +G+RRIEA+ G  A   L  +   +  LA   +V    V
Sbjct: 685 THVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQV 744

Query: 757 VGRVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             RVE+   + R    +L+ + A+  L       +  K  DV  ++++ +E       + 
Sbjct: 745 ADRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAK--DVRGVAYVGTEAPEGAAAND 802

Query: 813 MDALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
           +  L ++I+  I      ++ V      KAS+++ V +    R  +A DL + +      
Sbjct: 803 VRTLAQEIRGRIDAARPAVIAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS---- 858

Query: 866 GGGGGRPHMAQSGG 879
           G GGG   +AQ GG
Sbjct: 859 GRGGGSDDLAQGGG 872


>gi|227513125|ref|ZP_03943174.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083700|gb|EEI19012.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 887

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 346/924 (37%), Positives = 515/924 (55%), Gaps = 85/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 14  SQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKNPRMTSS 73

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K F  D+
Sbjct: 74  QKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPKWFGWDK 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D +A K W+ + G+S D II I   DNFW + + GP GP SEIF+D+G  
Sbjct: 130 DKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIFYDRGAD 185

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E +R++E+WN+VF QF    +     LP+ +IDTGMGLER+ +
Sbjct: 186 FDELAPDDPENYPGG--ENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLERVVS 243

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           + Q    N++ DLF  +I+ +E  +  K  G N    V  R+I DH R+ +  I DG LP
Sbjct: 244 IFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGDGALP 303

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG     +  L P +   + S YPE+++ +  IE+ +R
Sbjct: 304 SNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQREYIEKVIR 363

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           SE++RF +TL  GL LL  V++      K+EI +G  AFKLYDT+G P ++ ++     G
Sbjct: 364 SEEDRFNETLADGLKLLHDVIADTKAESKNEI-DGPTAFKLYDTYGFPYELTKEEASEVG 422

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L  +D   F   + +Q+ RAR    G  S G    +   +K+    ++++GYD L     
Sbjct: 423 L-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDLLVKVKDD---SEYVGYDTLD---- 474

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             +D K++                  IV+  ++V E+     +EV+FD+TPFYAE GGQ+
Sbjct: 475 -VKDAKLI-----------------DIVENEKLVSES-KADTIEVIFDKTPFYAEMGGQV 515

Query: 529 GDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV------LTIDYQN 579
            D G  +   GD +   + DVQ    G  +H        ++T+ SLV      L +D   
Sbjct: 516 ADRGVILDENGDKV-ADVIDVQHAPNGQNIH-------TIKTQESLVKGQRYHLVVDKLF 567

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             ++  NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  V
Sbjct: 568 HSRVEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMV 627

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I + + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV
Sbjct: 628 NKQIFKEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHV 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T +I L  IVSES + AGIRRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  
Sbjct: 683 KNTRDIGLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPT 742

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHK--IADVNFMSHIISEVDSKELKSVM 813
           RVE++ +E + L+      + +L     E +  HK        ++ II +    +L+ + 
Sbjct: 743 RVEQLQDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLT 802

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872
           D  + K  S +++L G    +KA++++ V+++ + D   A DL +  A  +  GGGGGRP
Sbjct: 803 DTWRSKGLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNI-KGGGGGRP 860

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
           +MAQ+GG + +  D+A+     +L
Sbjct: 861 NMAQAGGKDPSGLDKAMKAAIEWL 884


>gi|227524340|ref|ZP_03954389.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088571|gb|EEI23883.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 887

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 346/924 (37%), Positives = 515/924 (55%), Gaps = 85/924 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 14  SQIRQMFLDFFQEKGHAIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKNPRMTSS 73

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K F  D+
Sbjct: 74  QKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPKWFGWDK 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D +A K W+ + G+S D II I   DNFW + + GP GP SEIF+D+G  
Sbjct: 130 DKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIFYDRGAD 185

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E +R++E+WN+VF QF    +     LP+ +IDTGMGLER+ +
Sbjct: 186 FDELAPDDPENYPGG--ENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLERVVS 243

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           + Q    N++ DLF  +I+ +E  +  K  G N    V  R+I DH R+ +  I DG LP
Sbjct: 244 IFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGDGALP 303

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG     +  L P +   + S YP++++ +  IE+ +R
Sbjct: 304 SNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPKVLEQREYIEKVIR 363

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           SE++RF +TL  GL LL  V++      K+EI +G  AFKLYDT+G P ++ ++     G
Sbjct: 364 SEEDRFNETLADGLKLLHDVIADTKAESKNEI-DGPTAFKLYDTYGFPYELTKEEASEVG 422

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L  +D   F   + +Q+ RAR    G  S G    +   +KE    ++++GYD L     
Sbjct: 423 L-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDLLVKVKED---SEYVGYDTLD---- 474

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             +D K++                  IV+  ++V E+     +EV+FD+TPFYAE GGQ+
Sbjct: 475 -VKDAKLI-----------------DIVENEKLVSES-KADTIEVIFDKTPFYAEMGGQV 515

Query: 529 GDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV------LTIDYQN 579
            D G  +   GD +   + DVQ    G  +H        ++T+ SLV      L +D   
Sbjct: 516 ADRGVILDENGDKV-ADVIDVQHAPNGQNIH-------TIKTQESLVKGQQYHLVVDKLF 567

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             ++  NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  V
Sbjct: 568 HSRVEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMV 627

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I + + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV
Sbjct: 628 NKQIFKEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHV 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T +I L  IVSES + AGIRRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  
Sbjct: 683 KNTRDIGLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPT 742

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHK--IADVNFMSHIISEVDSKELKSVM 813
           RVE++ +E + L+      + +L     E +  HK        ++ II +    +L+ + 
Sbjct: 743 RVEQLQDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLT 802

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872
           D  + K  S +++L G    +KA++++ V+++ + D   A DL +  A  +  GGGGGRP
Sbjct: 803 DTWRSKGLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNI-KGGGGGRP 860

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
           +MAQ+GG + +  D+A+     +L
Sbjct: 861 NMAQAGGKDPSGLDKAMKAAIEWL 884


>gi|282896478|ref|ZP_06304498.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9]
 gi|281198584|gb|EFA73465.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9]
          Length = 878

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 341/896 (38%), Positives = 520/896 (58%), Gaps = 53/896 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+F+ +  H+ LPS+SL+P  DPT++ T +GM+PFK IF GQ    ++  TT QK
Sbjct: 11  IRQLFLDFYTQRQHQPLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTAEFKRATTSQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L   RL 
Sbjct: 70  CIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGLPPERLV 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V+++D+EAF +W++  G+   +I R+  +DNFW    TGPCGPCSEI++D    + G 
Sbjct: 126 VSVFEDDDEAFNIWQQQIGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-GD 184

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  NNY+ 
Sbjct: 185 DHIDLEDDTRFIEFYNLVFMQYNRDISGNLTPLQNKNIDTGMGLERMAQILQKVPNNYET 244

Query: 247 DLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   +I+ + ++  + Y   + N  V+ +VI DH+R+   +IAD I  +N GRGY+LRR
Sbjct: 245 DLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADEIRASNVGRGYILRR 304

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RL+G     +  +     +   S YP L Q + +I+  L+ E+  F KTLD
Sbjct: 305 LIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQRETVIKAELQREEGNFLKTLD 364

Query: 364 RGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           RG  LL  ++  + +    +++G+ AF LYDT+G PL++ Q+I   + L+ +D+  FN  
Sbjct: 365 RGEKLLGEIIQEVKQQGLTVISGESAFTLYDTYGFPLELTQEIAQEQSLS-VDVEGFNTE 423

Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +Q  RA+A   ++ L   T +     L E   +T+FIGY  L                
Sbjct: 424 MHKQIERAKAAHETIDL---TVQGSLDKLAEHIHSTEFIGYRQL---------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ +  ++ +G     A  G  V++V D+TPFYAE+GGQ+GD G   GDG+
Sbjct: 465 -------ATTAKIAVLLVEGIAQATATGGTNVQIVLDKTPFYAESGGQIGDQGYISGDGL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV+K+++  F+H   +ERG ++   S+   +D  NRR+   NH+ATHLL  AL  
Sbjct: 518 LIRIEDVKKESD-FFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS ++ D LRFD   S+ +T  E++ +ED VN  I+Q  P    I+   +A
Sbjct: 577 IVDEGISQAGSLVSFDRLRFDFNCSRSLTEDEVQQVEDLVNAWISQAHPAQVEILPLPEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY D VRV+       GV S  LCGGTHV++TGEI +  I+S+  + AG
Sbjct: 637 KARGAVAMFGEKYGDHVRVIDFP----GV-SMELCGGTHVNNTGEIGVFKIISQVGVSAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA++G     +L  +D+ +K L++  KV    +  R+  +  E R  + +    K 
Sbjct: 692 IRRIEAVSGAAVLDYLNIRDQVVKDLSNRFKVKPEEIPDRITILQTELRHNEKVIQNLKS 751

Query: 780 QLN-VEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           QL  V+  S  + A V     II    +++D + LK   + L +KI +G ++L  I +  
Sbjct: 752 QLAIVKSDSLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIVNGAVVLASIPEPG 811

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           K S++   +  + ++   A       AK L GGGGGG+P++AQ+GG + +K  QA+
Sbjct: 812 KVSIVAAFSSHVNEKGLQAGKFVGNIAK-LCGGGGGGKPNLAQAGGRDASKLPQAL 866


>gi|325268831|ref|ZP_08135456.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324988803|gb|EGC20761.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 888

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 341/941 (36%), Positives = 512/941 (54%), Gaps = 100/941 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEAAGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY     EG N           + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYSHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   G+ E L+G  A
Sbjct: 359 REMGAAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGRKE-LDGKEA 417

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F+L+DT+G PLD+ + ++C      +D   FN+ + +Q++RAR  ++ + +G     W  
Sbjct: 418 FRLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMAKQKARARNAAV-VENGD----WEV 471

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           L+E  G  +F+GYD       +   RKV  +K                            
Sbjct: 472 LRE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF------------------------- 504

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV++     
Sbjct: 505 ---YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNV 558

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E   +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + I
Sbjct: 559 EADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKI 618

Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           T  EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV       
Sbjct: 619 TDEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFG---- 674

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L 
Sbjct: 675 --PSCEFCGGIHAASTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLK 732

Query: 747 SFLKVSQG--NVVGR-VEEI------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +    ++    V+ R VEE        E++R   +  A + L   VE      + D   +
Sbjct: 733 AMFNNAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVE------MVDGVHV 786

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDL 855
              +  VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  +
Sbjct: 787 IKAVLPVDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKI 846

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            R +AK++  GGGGG+PH AQ+GG + +    A+  V   +
Sbjct: 847 IREAAKLI-KGGGGGQPHYAQAGGKDADGVSAAVDKVMELI 886


>gi|116493011|ref|YP_804746.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265525|sp|Q03ER8|SYA_PEDPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116103161|gb|ABJ68304.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 881

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 340/923 (36%), Positives = 517/923 (56%), Gaps = 82/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF+  GH + PS+SL+P +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEIRRMYLDFFKSKGHIIEPSASLVPQDDPTLLWINSGVATMKKYFDGSVVPEVPRLTSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT +  + +D 
Sbjct: 67  QKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWYGMDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +DEEA K+W + + +    I+++   DNFW + E GP GP SEIF+D+GE 
Sbjct: 123 EKLYVTVYPKDEEAKKIWLE-TPIDPSHIVKV--EDNFWDIGE-GPSGPDSEIFYDRGEA 178

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ER++EIWN+VF QF  +       LP  +IDTGMGLER+ +
Sbjct: 179 FNNLEDDDPENYPGG--ENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           V Q+   N++ DLF  +I   E+++G KY  N  + ++ +VI DH R+ +F I DG +P+
Sbjct: 237 VFQDAPTNFETDLFLPIIHEVEKLSGKKYGENKESDISFKVIADHARAITFAIGDGAIPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ + + LG  E  +  ++P +   M   YPE++  +  I + ++S
Sbjct: 297 NEGRGYVIRRLLRRAVMHGKQLGVNETFLYKMVPVVGEIMKDYYPEVLADQDYIAKVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E++RF +TL  GL LL+ ++      G D I   D AF+L+DT+G PL++ ++    +GL
Sbjct: 357 EEDRFSETLTDGLELLNTIIDETKTKGSDTISGFD-AFRLFDTYGFPLELAKEYASDKGL 415

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   +++Q+ RAR A S     G    +   LK +   ++++GYD LR     
Sbjct: 416 K-VDEAGFEDEMQKQKERARSARSTEKSMGVQSDLLTDLKTE---SKYVGYDTLR----- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                       +D     ++I++ ++Q G++ +    G+   V+F+ TPFYAE GGQ+ 
Sbjct: 467 ------------VD-----NAILENVIQDGKLTDIVEPGE-ARVLFNITPFYAEMGGQVA 508

Query: 530 DTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           D G  I D    I  ++ DVQ    G  + H I     + +  +  L ++     ++  N
Sbjct: 509 DQG-EIRDANGEIVAEVIDVQHAPNGQNL-HTIKALKKMHSGAAYTLEVNRAFHLKVEKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  ILG H  Q GS + P  LRFD TH   +T+ +L  +E  +N+ I   
Sbjct: 567 HTATHLLDQALRDILGDHTQQAGSLVEPGYLRFDFTHFGQVTNEDLDRVEKIINEKIYDE 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T   + E     GA AL   KY  +VRVV +     G +S   CGGTHV +T EI 
Sbjct: 627 IPVTTVETDLETGKKMGAIALFNDKYGKKVRVVGI-----GDYSKEFCGGTHVKNTNEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IVSES + AG+RRIEA+T Q A   L  ++  LK  A  LK +Q  +V  + E++  
Sbjct: 682 LFKIVSESGVGAGVRRIEAVTSQAALEFLNTEENLLKQTAGLLKSAQLKDVPTKTEQLQS 741

Query: 766 EYR----KLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDAL 816
             +    K+  + AK  +    N+ D    ++ ++N +  I ++V      +L+ + D  
Sbjct: 742 NVKALTQKISQLEAKIAKSQAANIGD----EMVEINGVRLIAADVQVSGMDQLRQMADDW 797

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHM 874
           + K QS +++L     E KA+++  V +D + +   A DL + ++ KV   GGGGGRP+M
Sbjct: 798 KNKDQSDVLVLAAKIGE-KANLIAAVKDDFVKKGLKAGDLIKAIAPKV--NGGGGGRPNM 854

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ+GG N +    A+     +L+
Sbjct: 855 AQAGGSNPDNIKAALQAAREWLE 877


>gi|327314000|ref|YP_004329437.1| alanine--tRNA ligase [Prevotella denticola F0289]
 gi|326944684|gb|AEA20569.1| alanine--tRNA ligase [Prevotella denticola F0289]
          Length = 888

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 340/940 (36%), Positives = 510/940 (54%), Gaps = 98/940 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY     EG N           + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   E   L+G  AF
Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + ++C      +D   FN+ + +Q++RAR  ++ + +G     W  L
Sbjct: 419 RLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMAQQKARARNAAV-VENGD----WEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV++     E
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNVE 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFG----- 674

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 675 -PSCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQG--NVVGR-VEEI------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
               ++    V+ R VEE        E++R   +  A + L   VE      + D   + 
Sbjct: 734 MFNNAKDLKAVLTRFVEENDAMKREVEKFRTQAVDRAAKTLAERVE------MVDGVHVI 787

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLA 856
             +  VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + 
Sbjct: 788 KAVLPVDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKII 847

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           R +AK++  GGGGG+PH AQ+GG + +    A+  V   +
Sbjct: 848 REAAKLI-KGGGGGQPHYAQAGGKDADGVSAAVDKVMELI 886


>gi|289643307|ref|ZP_06475431.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289506881|gb|EFD27856.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 894

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 314/821 (38%), Positives = 458/821 (55%), Gaps = 67/821 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I + +L +F   GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+  P Y    +V
Sbjct: 4   AEIASRWLRYFADRGHTVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGEVAPPYSRAASV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VGRT RH +FF+M GNFSFG YFKE  I LAW+LLT       + 
Sbjct: 63  QKCVRT----TDIEEVGRTTRHGSFFQMCGNFSFGDYFKETVIPLAWELLTTPVADGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RL++TVY +D+EA  +W    G+  D+I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LAEDRLWVTVYLDDDEAADIWHSKIGVPTDRIQRLGMEDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +  GERY+EIWNLVFMQ+   E  +K++  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GAEGGPAVNGERYLEIWNLVFMQYIRGEGSSKKDYPILGDLPSRNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           AT+LQ   N Y+ID  + ++  +  +TG +Y  E  + V+ RV+ DH+R+S  LI DG+L
Sbjct: 238 ATILQGVDNLYEIDTSRVILDRTSALTGARYGAEHRSDVSLRVVADHVRTSVMLIGDGVL 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR+MRRA+   RLLG  +  M  ++ A    MG  YPEL+  ++ I+   
Sbjct: 298 PGNEGRGYVLRRMMRRAIRNMRLLGAHDATMHEMVEATIEAMGPQYPELVTDRVRIDSVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  + D   S   K    ++ G+  F+L+DT+G P+D+  ++    G
Sbjct: 358 TAEEAAFLQTLRTGTSIFDLAASETKKAGGSVIPGERVFQLHDTYGFPVDLTLEMAAETG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L  +D   F + + EQR RA+A +    +G  +   +  +    G + F GYD       
Sbjct: 418 LT-VDEEGFRRLMTEQRQRAKADARAKKTGHVDTSAYRDVLAAAGPSAFTGYD------- 469

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           +    + V+ ++  G    EA  G  VE+V D+TPFYAE GGQL
Sbjct: 470 ----------------SGAEEARVRGLLVGGAAAREAAQGDDVEIVLDRTPFYAEGGGQL 513

Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G   + DG  ++I DVQK    + VH   V  G +     +   ID   R  +S +H
Sbjct: 514 ADAGVIRLADGTEIEILDVQKPLPELIVHRGRVRTGEVTLGADVQAEIDPARRAAISRSH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS  +P   RFD + +  +  + L  +E+ +N ++ ++L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFSAAAAVPPSVLADVEETINQVLTEDL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ + A  +GA A+ G KY+DRVRVVS+     G +S  LCGGTHV  +G++ L
Sbjct: 634 DVHAEVMDIDQARRTGAIAMFGEKYSDRVRVVSI-----GDYSRELCGGTHVRRSGQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-------VVGRV 760
           + ++ E+S+ AG+RR+EA+ G  A  +L  +   +  +   LK  + +       V+GR+
Sbjct: 689 VKLLGEASVGAGVRRVEALVGLDAYRYLAREAVLVSQITDVLKAPRADVPERLSQVLGRL 748

Query: 761 EEIWEEYRKL---QLIHAKRKLQLNVED-----LSCHKIAD 793
            E  +E  KL   Q++     L    ED     L  H+ AD
Sbjct: 749 REAEKELEKLRAAQVLAIAGDLARAAEDVGGTALVTHRAAD 789


>gi|226328743|ref|ZP_03804261.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198]
 gi|225201929|gb|EEG84283.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198]
          Length = 589

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/615 (47%), Positives = 390/615 (63%), Gaps = 44/615 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +   Y   T
Sbjct: 4   STAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEEWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMDPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  VLQ   +NYDIDLF+ LI++  QVT      N  +  RVI DH+RS SFL+ DG++P
Sbjct: 244 ITAVLQHVNSNYDIDLFRSLIKSVAQVTNATDLENKSL--RVIADHIRSCSFLVCDGVIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   M  A  EL + + ++E+ L+
Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIEVMAEAGEELKRQQAIVEKVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L++L  D+IL G+ AF+LYDT+G PLD+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLQLLDEELANL-TDDILPGETAFRLYDTYGFPLDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+EEQR RAR  S   G GT    + SL +    ++F GYD          D
Sbjct: 420 VDENGFDVAMEEQRKRARESS---GFGTD---YNSLIKVDSRSEFSGYD---------HD 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +                 + AI   G+ V E  +G++  +  ++T FYAE+GGQ+GD G
Sbjct: 465 EQ--------------QGTITAIFHNGQSVTELKAGEEGIIFLNKTAFYAESGGQVGDKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G     ++TD QK  + I  H   V  G       +  TID   R  + +NHSATHL
Sbjct: 511 VLTGKDSLFEVTDTQKYGKAI-GHIGKVNVGSFIVNHKINATIDIARRDAIRLNHSATHL 569

Query: 593 LHHALSTILGSHVSQ 607
           LH AL  +LG+HV+Q
Sbjct: 570 LHAALRQVLGTHVTQ 584


>gi|293374254|ref|ZP_06620582.1| alanine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292647087|gb|EFF65069.1| alanine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 873

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 344/915 (37%), Positives = 520/915 (56%), Gaps = 73/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +L FF+  GH + P + L+P NDP+L++ NSG+   K  F G+E P    +T  
Sbjct: 7   SEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E A+   W+LLT +  F  D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             LY+TVY  D+E + LW K+ G+S D I+++  N  FW + E GPCGP +EIF+D+G  
Sbjct: 123 ELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEYN--FWEIGE-GPCGPNTEIFYDRGTK 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234
              E I   L     E +RYIEIWN+VF Q+  +   ++ E  +LP  +IDTGMGLERMA
Sbjct: 179 YDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLERMA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            V+Q    N+D DLF  +I+A+E+++G+KY        +VI DH+R+ +F +ADG L +N
Sbjct: 239 CVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGALLSN 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ Y + LG     M  L+P +   M   YP +     L+++ ++SE
Sbjct: 299 EGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVIKSE 358

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ++RF +TL  G  +L  +++   +D+ ++G  AF LYDT+G P ++  +     G   +D
Sbjct: 359 EDRFRQTLADGEKILTDLIAKC-EDKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+  +E QR RAR     + S  ++    +L      ++F+GY  L           
Sbjct: 417 KEGFDAQMEVQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         +S V  ++Q GE+V+    +GQ   V+ D TPFYAE+GGQ+ DTG 
Sbjct: 464 ------------STTSNVILLLQNGEVVDSLTGAGQ---VILDTTPFYAESGGQVADTGM 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + +TDV K   G  +H   V+ G L     +V  +  +NR  L+ NH+ATHLL
Sbjct: 509 MTTSAANVMVTDVIKAPNGQHLHSVQVD-GTLSLNDEVVCQVQVENRLDLTKNHTATHLL 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE  VN+ I  ++PV    
Sbjct: 568 HQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEVFE 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA AL   KY + VRVV       G +S  LCGG HVS+T EI L  I+SE
Sbjct: 628 KSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKIISE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----- 768
           S I AG RRIEA+TG+ A  ++    E+  +++  LK     +  RVE I +E +     
Sbjct: 683 SGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAHRE 742

Query: 769 ----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               K +L H K K  +N    +  ++A +  ++  + +VD   L+ ++D  ++++ S +
Sbjct: 743 NDSLKSKLSHLKMKEIVN----NTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAV 798

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882
           I+L   + + K ++   VT D + +   V   ++  +V  + GGGGGGRP MAQ+G  + 
Sbjct: 799 IVLAS-AVDGKVAISCGVTPDYVKQ--GVHAGKIVKEVATICGGGGGGRPDMAQAGAKDA 855

Query: 883 NKADQAIAGVASFLK 897
            K ++A+  V  +LK
Sbjct: 856 TKIEEALKNVDEWLK 870


>gi|254519282|ref|ZP_05131338.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226913031|gb|EEH98232.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 879

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 335/907 (36%), Positives = 529/907 (58%), Gaps = 68/907 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+   H  L S  L+P ND +L+  N+GM P K  FTG ++P  + +TT 
Sbjct: 7   NELREAYLKFFESKDHLRLESFPLVPKNDKSLLLINAGMAPLKPYFTGLQEPPRKRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE  I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEIIPWAWEFITETLQIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y ED+EA+ +W K + +   +I R+  +DNFW +   GPCGPC+EI +D+GE   
Sbjct: 123 LYVTIYLEDDEAYDIWCKKTDVDPKRIFRLGKDDNFWEIG-VGPCGPCTEIHYDRGEGAI 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   +  S E+  R +E WNLVF QF++  +     L   +IDTGMGLER+AT++Q  
Sbjct: 182 TNVEDFVKASDED--RVVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++Q   +++G+KY  + +  ++ R+I DH++S + LI+DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILQKVSELSGVKYGEDKLKDISLRIITDHVKSVTMLISDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ ++      AYP LI++K  IE  +  E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGIKGLFLTDIVESVVENYSGAYPMLIESKEYIERIVSLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L+  +  +    ++ L G+ AFKLYDT+G P+++ ++IL  +G+  +D  
Sbjct: 360 NETIDSGMNILNDYIEEMEASNEKTLKGEKAFKLYDTYGFPIELTEEILEEKGM-NVDYE 418

Query: 417 SFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +F + ++EQR RAR+       +G       KI  S+      T+FIGYD +        
Sbjct: 419 AFRKEMDEQRQRARSARGESSYMGSDENPINKIDASIN-----TEFIGYDNIE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           V+S +  +      V+E   G+K  +V D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------VNSKILVLANDNNFVDELSKGEKGYIVTDKTPFYAEMGGQVGDK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D +K   G  +H+  V  G ++      L ID   R  ++ NH+ATH
Sbjct: 511 GIIKTASGEAYVYDTKKNVGGKTIHYVKVVEGTIKINEEANLKIDVLRRNNIAKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  ++G HV+Q GS +  + LRFD  H + +T  E++ IE+ VN  I +   V T
Sbjct: 571 MLHEALKQVVGKHVNQAGSYVDDERLRFDFAHFQGLTEEEIEKIEELVNKKIMEVFNVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  ++A  SGA AL   KY D+VRVVSV     G  S  LCGGTHV+++GEI L  I+
Sbjct: 631 NLMTLDEAKESGAMALFDDKYGDKVRVVSV-----GEFSKELCGGTHVNNSGEIGLFKII 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEY 767
           +E+ + AGIRRIEA++G  A  ++  +   LK   S LK S+ +V+ ++     EI E+ 
Sbjct: 686 NEAGVAAGIRRIEAVSGLNAIKYMEEKQRLLKEACSALKCSEKDVLKKIASQGAEIKEKE 745

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +++  +  K KL   VED     + +VN    +++ +  +D   L+ + D ++ K+ SG+
Sbjct: 746 KEISEL--KSKLTCGVEDDILSSVKEVNGIKVVAYGLEGIDGNALRDLGDKMRSKLSSGV 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNG 882
           ++L+  +   K +V+ + T+D+L++   ++  ++      + GGGGGGRP MAQ+GG N 
Sbjct: 804 VVLLS-NVGGKVNVVSMATKDVLEK--GINCGKIIKEVAAVVGGGGGGRPDMAQAGGKNP 860

Query: 883 NKADQAI 889
                AI
Sbjct: 861 ENIKSAI 867


>gi|34556759|ref|NP_906574.1| alanyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|44888324|sp|Q7MAD3|SYA_WOLSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34482473|emb|CAE09474.1| ALANYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 855

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 342/897 (38%), Positives = 516/897 (57%), Gaps = 58/897 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL++F   GH +  S  L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 3   IRKLFLDYFASKGHAVYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPAPTNPRATSCQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFKE+AI  AW+ +T+     +  L
Sbjct: 62  LCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGDYFKEQAIDHAWEFVTEVLGFSKEVL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           ++TV++ D+EAF+LW+K   + A +I R+   DNFW M +TG CGPCSEIF DQGE    
Sbjct: 122 WVTVHESDDEAFELWQK--HVDASRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGEEKFH 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+A + + K++N+
Sbjct: 180 GSEDYFGGDGDRFLEIWNLVFMQYERSSDGTLTPLPKPSIDTGMGLERVAALKEGKSSNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  +I+  E++TG  Y   +  ++RVI DH+RS  FL+A G+    EGRGYVLRRI
Sbjct: 240 DSSLFMPMIRKVEELTGKPYHYESGASYRVIADHIRSICFLLAQGVNFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG   P +  +   +C +MG  Y  L + +  I+     E+ERF  T+  
Sbjct: 300 LRRAVRHGYLLGLNAPFLHEVAEVVCGQMGDHYGYLKEKREHIKRLTFQEEERFFATIAG 359

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ +    L       + +G+ AFKLYDT G PLD+ +D+L  +G+  +D+ +F   ++E
Sbjct: 360 GMEVFKKELEK--TQSVFSGEAAFKLYDTFGFPLDLTEDMLREKGIR-VDLAAFEACMKE 416

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR+RA+A   G G    E  +  L E + +  F+GY+        KE             
Sbjct: 417 QRARAKASWKGSGDELKEGDFALLLEAFPSNSFVGYE--------KEAH----------- 457

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
               S ++  + +  + V    +G+   V+ ++TPFYAE+GGQ GD G     G R+ + 
Sbjct: 458 ---TSKLLAILNRDYKRVSSLGAGESGFVMLEETPFYAESGGQCGDEGELRARG-RI-VA 512

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            VQ   +   ++ + +E      E   +  +  + R ++  +HSATHLLH  L   LG H
Sbjct: 513 QVQGTKKYFGLNLSRIEALDEICEGETLEAVVSRERLEVQKHHSATHLLHAILRQKLGDH 572

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V+Q GS +  D LRFD +H K +T  E+  +E+ VN +I+ ++P  TR M  ++A ASGA
Sbjct: 573 VAQAGSLVEKDRLRFDFSHPKALTHEEVGMVEEEVNRLISLSIPSRTREMRVDEAKASGA 632

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL G KY D VRVV     D G  S  LCGGTHV ++  I   YI  ES + AG+RRIE
Sbjct: 633 MALFGEKYGDLVRVV-----DFGEASVELCGGTHVENSAHIGSFYITKESGVSAGVRRIE 687

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+ G  A  +  G++       +  ++++   + + +E+     KL+     R+L+  + 
Sbjct: 688 AVCGMAAYHY--GKE-------ALQEIAEAKEILKAKELKLGIEKLK--EQVRELKSEMS 736

Query: 785 DLSCHK---IADVNFMSH---IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            LS  K   I++   M     I+  +++ ++K+ +D ++ + +   ++L+ + +EK   V
Sbjct: 737 ALSSSKSGAISEGVMMGETRVIVETLEAGDIKNSIDEIKNRYEKVAVLLLQVKEEK---V 793

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++       DR  A    +  A +L GGGGGGR   AQ+GG + +KAD+A+    ++
Sbjct: 794 MLAAGVKGEDRIKAGAWIKEIAPIL-GGGGGGRDDFAQAGGKDASKADEALQSAKNY 849


>gi|153938938|ref|YP_001391861.1| alanyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|205830033|sp|A7GGF1|SYA_CLOBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152934834|gb|ABS40332.1| alanine--tRNA ligase [Clostridium botulinum F str. Langeland]
          Length = 879

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 334/916 (36%), Positives = 527/916 (57%), Gaps = 68/916 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFK+  I  AW+ +T+   L + 
Sbjct: 66  CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177

Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             G   +SEE       ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++
Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295
           Q     +++D  K ++    +++G  Y+ + +  ++ R+I DH+RS +F+I+DGILP+NE
Sbjct: 237 QNVDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+
Sbjct: 297 GRGYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ I
Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415

Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           D   FN+ ++EQR RAR+     + +G       KI  ++      T F GYD L     
Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNIN-----TDFEGYDKLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V S V  I++  E       G +  +V   TPFYAE GGQ+
Sbjct: 467 -------------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG    D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+
Sbjct: 508 GDTGIIYNDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   
Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T++M+ E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I + 
Sbjct: 628 VNTKVMDIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766
            I+SE+ + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  +
Sbjct: 683 KIISEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742

Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++ ++   K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG
Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881
           +++L G + + K   + + T+D + +   V   ++  +V  + GGGGGGRP MAQ+GG +
Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859

Query: 882 GNKADQAIAGVASFLK 897
            NK + AI  V + ++
Sbjct: 860 PNKLEDAIKTVETVVE 875


>gi|218258080|ref|ZP_03474507.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225799|gb|EEC98449.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii
           DSM 18315]
          Length = 875

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 354/909 (38%), Positives = 502/909 (55%), Gaps = 80/909 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D+EA   W+K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADSSLEPLPARVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    V  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTSYGKDKQQDVAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK+ +++G  AF LYDT+G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKN-VISGVDAFTLYDTYGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   +I  F+  +++Q+ RAR  ++ + +G     W  LKE  G   F+GYDL
Sbjct: 418 LILRENGMEA-NIDEFDVEMQKQKDRARNAAV-IETGD----WVVLKE--GGCNFVGYDL 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                    D ++L                + I Q+ +++         ++V DQTPFYA
Sbjct: 470 FEC------DAEILR--------------YRQIKQKNKVL--------YQIVLDQTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GDTG  I D   + + D  K+   + VH  +V +      ++    I+ + R Q
Sbjct: 502 EMGGQVGDTGWLIADDETIDVIDT-KRENNLPVH--LVAKLPKDVTVTFTAKINEKKRIQ 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V++ 
Sbjct: 559 CECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEK 618

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I  N P+   R M   +A A GA AL G KY D VRVV         +S  LCGGTH+ +
Sbjct: 619 IRANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------NSIELCGGTHIPA 672

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSH-LMGQDEKLKSLASFLKVSQ-GNVVGR 759
           TG I  L +V ESSI AG+RRIEA+T + A ++  M QD   +  A F  V      + +
Sbjct: 673 TGMIGSLRVVGESSIAAGVRRIEAVTAEGAENYTFMLQDSLRELRAMFNNVPNLSQTIKK 732

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQ 817
             E   E +K    + K K+Q   +DL   K  + N +  ++   E +   +K +  A Q
Sbjct: 733 AIEENAELKKQVGDYLKEKVQQLKKDLIA-KAVERNGVKVVVFRGEANVDAIKDL--AFQ 789

Query: 818 KKIQSG----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
            K +S     +  + GI   +K +++++++E L+    NA  L + +AK++  GGGGG+P
Sbjct: 790 IKGESNTDEKVFFVAGIKDGEKCALMVMLSEQLVSEGLNAGKLVKDAAKLI-QGGGGGQP 848

Query: 873 HMAQSGGPN 881
           H A +GG N
Sbjct: 849 HFATAGGKN 857


>gi|194468332|ref|ZP_03074318.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194453185|gb|EDX42083.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 884

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 335/929 (36%), Positives = 519/929 (55%), Gaps = 85/929 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT +  F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G N    +  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++   +++   ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IESEEDRFSATLNGGLNLLNNVIAEAKENKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY       
Sbjct: 418 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                          DLT   + ++  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 467 --------------TDLTVDNAKVI-GLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 511

Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576
           Q+ DTG  I + G ++ ++ DVQ         HA  ++ + R E++          L +D
Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTTPIKKGARYKLVVD 562

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E
Sbjct: 563 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 622

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + VN+ I + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG
Sbjct: 623 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 677

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
            HV +T E+ L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   
Sbjct: 678 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 737

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810
           V  +VE +  E ++ Q  +   + ++  +  +     +      S I +EV      +L+
Sbjct: 738 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 797

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + D  + K  S +++L   S + KA++L+ V++D       A DL +  A  +  GGGG
Sbjct: 798 QLADTWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 855

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP++AQ+GG N     +A++    +L K
Sbjct: 856 GRPNLAQAGGKNPAGIKEALSQAKDYLDK 884


>gi|304436481|ref|ZP_07396455.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370527|gb|EFM24178.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 890

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 337/897 (37%), Positives = 511/897 (56%), Gaps = 57/897 (6%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +R  +L FF +K GH  LPS SL+P NDPTL+   +GM P K  FTG+ KP    + T Q
Sbjct: 24  LREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHRIVTCQ 83

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           +CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L + +L
Sbjct: 84  RCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKEKL 139

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++T+Y  D+EA ++W +  GLS D I+ +   DNFW +   GPCGP SEI+ D GE    
Sbjct: 140 WVTIYPNDDEARQIWLEQPGLSPDHIVPL--EDNFWEIG-PGPCGPDSEIYIDLGEERGC 196

Query: 186 GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           G P  S   + +R++EIWNLVF Q+++    E  +L   +IDTG GLER+A+V+Q K  N
Sbjct: 197 GSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQNKKTN 256

Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ DL   +I+ +  V+  +Y  +    ++ +VI DH RS   +I DGILP+NEGRGYVL
Sbjct: 257 FETDLLYPVIEYAANVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEGRGYVL 316

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDERFG 359
           RR +RRA+ + R+LG T+P +   + A+    G    + EL+  +  I   +R E+ERF 
Sbjct: 317 RRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIRRVIRIEEERFA 376

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL +G+ LL+  +  L  +  +IL G+V FKLYDT+G P ++ ++IL   GL  +D   
Sbjct: 377 ATLVQGIDLLNEEIDTLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK-LDDAG 435

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q +E+QR+RAR       S   E    ++ +  G                  D   L 
Sbjct: 436 FVQEMEKQRNRAR-------SARAENQAVAVPDLSGL-----------------DTSALT 471

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +   +   N     V AI + G +V+    G+   ++   TPF+AE GGQ+GD G  + D
Sbjct: 472 ENAEVREAN-----VVAIWRDGTLVDMLHDGESAGIILSTTPFHAEGGGQVGDAGLLLSD 526

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R+ I + ++  +G   H A VE G ++   ++ + +D  ++   + NH+ATHLL  AL
Sbjct: 527 VGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHLLQAAL 586

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+G HV Q GS +TP+ LRFD T+ +P+T  +++ IED VN+ I  ++ +    M   
Sbjct: 587 QRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEILSSIDLDISTMPIA 646

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL G KY D VRVV V        S  LCGG+HVS+TG+I L  I+ ES + 
Sbjct: 647 VAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIGESGVA 701

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIH 774
           AG+RRIEAITG+ A  ++   D  +++L+  LKV  G++  +V+++ +E + +Q     +
Sbjct: 702 AGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLPTQVDKLIDEKKNMQEQLRTY 761

Query: 775 AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           A  + Q + + L     +I   + +   ++    +EL+++ D   +K+ +GI++L G++ 
Sbjct: 762 ADSRDQADAQKLLSDVQEIGKFHVIVGKVNVYSMEELRNIADLACEKLSAGIVVL-GMAD 820

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             K ++++   +D +           +A    GGGGGGRP MAQ+GG       QA 
Sbjct: 821 NDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGGGGRPDMAQAGGKIPQNLSQAF 877


>gi|257068797|ref|YP_003155052.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559615|gb|ACU85462.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
          Length = 902

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 337/931 (36%), Positives = 517/931 (55%), Gaps = 81/931 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S I   +L FF K  HE++PS+SL+  +DP+++FT +GMVPF     G E   Y    
Sbjct: 2   RTSEIHRRWLAFFAKKDHEIVPSASLV-SSDPSILFTIAGMVPFIPYIVGTETAPYPRAA 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119
           +VQKC+R     ND++NVGRT RH TFF+M GNFSFG YFK+ AI  +W+ LT   D   
Sbjct: 61  SVQKCIRT----NDIENVGRTTRHGTFFQMAGNFSFGDYFKQGAIDYSWEFLTTPQDQGG 116

Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
              D  RL+ TV+++DEE+++   ++ GL   +++R+   + FW   + GP GPC E  F
Sbjct: 117 LGFDPERLWFTVWEQDEESYRHVTEVIGLDPQRVVRLPREEIFWDTGQPGPAGPCGEWHF 176

Query: 178 DQG-----ECIPGGLP---GSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSI 224
           D+G     E + G +P   G  +  +RYIEIWNLVF Q+   E   K    +  L + SI
Sbjct: 177 DRGPEHGPEAVTGTVPEWPGDEQAEDRYIEIWNLVFDQYLRGEGSGKDYPLLGELEQKSI 236

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSS 282
           DTG+G+ER+A +LQ K N Y+ID    +I+ ++++TG +Y     + V+ R+I DH+RS+
Sbjct: 237 DTGLGVERVAFLLQGKQNMYEIDQIFPVIEKAQELTGRRYGAVEEDDVHLRIIGDHVRSA 296

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             L+ADG+ P NEGRGYVLRR++RRA+   RLLGYT+P M  LLP   + M  +YPEL  
Sbjct: 297 LMLVADGVRPGNEGRGYVLRRLIRRAVRSMRLLGYTQPSMPQLLPISHSLMVESYPELEA 356

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
               I E + +E+E F +TL+ G  + +GV+  + ++   +L G+ AF+L+DT+G P+D+
Sbjct: 357 DFARISEIVHAEEEAFRRTLETGTTIFEGVVGAVKEEGGRVLPGEDAFRLHDTYGFPIDL 416

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFI 458
             ++    GL  +D  +F  A++EQR RARA +    +G T+   +S  L ++ G   F+
Sbjct: 417 TMEMASEVGLQ-VDAEAFRSAMQEQRERARADAAAKKAGHTDTALYSRLLSQRGGEVPFV 475

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY          ED               V++ V++++  G++V+   +  +VEVV   T
Sbjct: 476 GY---------TEDT--------------VATTVESVLVDGQLVDTVHAPAQVEVVLATT 512

Query: 519 PFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           PFYAEAGGQL D G  ++  G  +++ DVQK   G+ VH   +  G L    S + TID 
Sbjct: 513 PFYAEAGGQLADQGQISLTGGGLIEVDDVQKPVRGLIVHRGRLLEGELAQGASAIATIDV 572

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  ++  H+ATH++H +L   LG   +Q GS  +P  +RFD  + + +  + L+ IE 
Sbjct: 573 ARRGAIARAHTATHMVHESLREELGGSATQAGSENSPGRMRFDFRYGQAVPKSVLEQIEG 632

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN ++   L V  + M+ ++A A GA AL G KY D VRVVS+    GG  S  LCGGT
Sbjct: 633 RVNTLLQDELTVTDQQMSLDEAKALGAQALFGEKYGDIVRVVSI----GGDWSRELCGGT 688

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV STG I  + ++ E+SI +G+RR++A+ G  A  H   +   +  L+  LK      V
Sbjct: 689 HVDSTGAIGTVQLMGEASIGSGVRRVDALVGLSAYRHQAKEHALVSQLSELLK------V 742

Query: 758 GRVEEIWEEYRKL--------QLIHAKRKLQLNVED----LSCHKIADVNFMSHIISE-V 804
           G  EE+ E  R L        + + A R  QL  E      S   +A V  ++H   E +
Sbjct: 743 GAAEELPERVRALTQRMKDMEKQLAALRGQQLQAEAGKLVESASDVAGVRLIAHDAGEGI 802

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAK 861
            + +L+++   L+ ++   + + + ++        +V+  +   R     A  + R +A+
Sbjct: 803 AAGDLRTLALDLRSRLGEDVPVTIAVAGHDGGRAALVIATNATARERGLAAGTMLRGAAE 862

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            + GG GGG+P +AQ GG    +   A+  V
Sbjct: 863 AM-GGRGGGKPDLAQGGGGEPARIPAALTAV 892


>gi|290968328|ref|ZP_06559869.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781603|gb|EFD94190.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 322/770 (41%), Positives = 460/770 (59%), Gaps = 50/770 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +LEFF++  H  L S SLIP NDP+L+   +GM P K  FTG+  P    VTT 
Sbjct: 7   NEIRKAYLEFFKRKRHLQLHSFSLIPENDPSLLLIGAGMAPLKPYFTGKLVPPSPRVTTS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+  +LD  +
Sbjct: 67  QKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAISWAWEFLTEVLELDTDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D EA+  W  + GL  ++I +    DNFW + E GPCGP SEIF+D G    
Sbjct: 123 LYVTVYPDDTEAYGYWHTVIGLPEERIFKC--EDNFWEIGE-GPCGPDSEIFYDLGAERG 179

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   + +RY+EIWNLVF Q+ +  + +   L K +IDTG GLER+A+V+Q+K +
Sbjct: 180 CGKPECTVGCDCDRYLEIWNLVFSQYNRTAEGKYEPLAKKNIDTGAGLERLASVIQQKES 239

Query: 243 NYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N++ DL   +I+  E +T   G   +    V  +VI DH+R+ + +I+DGILP+NEGRGY
Sbjct: 240 NFETDLIFPIIE--EVITLCHGDYTDPQQKVAMKVIADHIRAITVMISDGILPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + RLLG  +  +  L+  +   MG  YPEL + + LI++ + +E+++F 
Sbjct: 298 VLRRVLRRAVRFGRLLGIRQLFLSGLVETVLAIMGEEYPELREHEALIKKVINTEEKQFS 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL +G+ LLD +L+  G  + L+G   FKLYDT+G P+++ ++I   +G+  ID+  F 
Sbjct: 358 ETLVQGMELLDSLLAKAGTAKTLSGQEVFKLYDTYGFPVELTEEIAAEQGVT-IDMNGFA 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ RARA    + +        SL                       DR+ L   
Sbjct: 417 AAMKEQQERARAARADVAAKVLTPDTTSL-----------------------DRQTL--- 450

Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                  GV++    ++ + G+  E    G+ + V+ D+TPF+AE GGQLGDTG     G
Sbjct: 451 ---QYAEGVTTATIVMLGKDGQEAEAVHDGETITVILDRTPFHAEGGGQLGDTGVLTAHG 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  +TD +    GI    A V  G L+   ++ + +D +    L+ NH+ATHLLH AL 
Sbjct: 508 GKAVVTDTKALPNGIIYMIAGVMEGSLKKGETVTVAVDTERHAALARNHTATHLLHTALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS +TPD LRFD TH  P+T+AEL+  E  VN  I +N PV+   MNRE+
Sbjct: 568 QVLGNHVNQAGSLVTPDHLRFDFTHFSPVTAAELREAEQLVNREILKNTPVMVTEMNREE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY D VRVVS+     G  S  LCGG+HV ST E+    I+SES    
Sbjct: 628 AKQKGATALFGEKYGDVVRVVSI-----GDFSCELCGGSHVKSTAEVGTFRIISESGTGT 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           G+RRIEAITG  A +    + + L   A+ LKV   ++V ++ ++ EE +
Sbjct: 683 GVRRIEAITGAAALAKAQAEAQILAQAAAVLKVKPESLVTKLTQLAEELK 732


>gi|325844825|ref|ZP_08168277.1| alanine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489012|gb|EGC91400.1| alanine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 873

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 343/915 (37%), Positives = 520/915 (56%), Gaps = 73/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR+ +L FF+  GH + P + L+P NDP+L++ NSG+   K  F G+E P    +T  
Sbjct: 7   SEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E A+   W+LLT +  F  D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFGFDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             LY+TVY  D+E + LW K+ G+S D I+++  N  FW + E GPCGP +EIF+D+G  
Sbjct: 123 ELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEYN--FWEIGE-GPCGPNTEIFYDRGTK 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234
              E I   L     E +RYIEIWN+VF Q+  +   ++ E  +LP  +IDTGMGLER+A
Sbjct: 179 YDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            V+Q    N+D DLF  +I+A+E+++G+KY        +VI DH+R+ +F +ADG L +N
Sbjct: 239 CVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGALLSN 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ Y + LG     M  L+P +   M   YP +     L+++ ++SE
Sbjct: 299 EGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVIKSE 358

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ++RF +TL  G  +L  +++   +D+ ++G  AF LYDT+G P ++  +     G   +D
Sbjct: 359 EDRFRQTLADGEKILTDLIAKC-EDKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+  +E QR RAR     + S  ++    +L      ++F+GY  L           
Sbjct: 417 KEGFDAQMEAQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         +S V  ++Q GE+V+    +GQ   V+ D TPFYAE+GGQ+ DTG 
Sbjct: 464 ------------STTSNVILLLQNGEVVDSLTGAGQ---VILDTTPFYAESGGQVADTGM 508

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  + +TDV K   G  +H   V+ G L     +V  +  +NR  L+ NH+ATHLL
Sbjct: 509 MTTSAANVMVTDVIKAPNGQHLHSVQVD-GTLSLNDEVVCQVQVENRLDLTKNHTATHLL 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE  VN+ I  ++PV    
Sbjct: 568 HQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEVFE 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA AL   KY + VRVV       G +S  LCGG HVS+T EI L  I+SE
Sbjct: 628 KSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKIISE 682

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----- 768
           S I AG RRIEA+TG+ A  ++    E+  +++  LK     +  RVE I +E +     
Sbjct: 683 SGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAHRE 742

Query: 769 ----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
               K +L H K K  +N    +  ++A +  ++  + +VD   L+ ++D  ++++ S +
Sbjct: 743 NDSLKSKLSHLKMKEIVN----NTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAV 798

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882
           I+L   + + K ++   VT D + +   V   ++  +V  + GGGGGGRP MAQ+G  + 
Sbjct: 799 IVLAS-AVDGKVAISCGVTPDYVKQ--GVHAGKIVKEVATICGGGGGGRPDMAQAGAKDA 855

Query: 883 NKADQAIAGVASFLK 897
            K ++A+  V  +LK
Sbjct: 856 TKIEEALKNVDEWLK 870


>gi|298384931|ref|ZP_06994490.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298262075|gb|EFI04940.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 872

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 345/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD   G     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN  +++Q+ RAR ++  + +G     W +L+E  G T+F+GY  
Sbjct: 418 LILRENGMT-VNIEEFNTEMQQQKQRAR-NAAAIETGD----WVTLRE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDCTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDSALREVLGKHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFG------SSIEFCGGIHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG---NV 756
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +      +
Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAPDLGIAI 730

Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        E+Y K +    K +L  N++++  H I  + F + + +EV    +K
Sbjct: 731 RKYIEENAGLKKQVEDYMKEKEASLKERLLKNIQEI--HGIKVIKFCAPLPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + AI  V
Sbjct: 844 GQPHFATAGGKNTDGLNAAIEKV 866


>gi|78188347|ref|YP_378685.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123580381|sp|Q3ATN3|SYA_CHLCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78170546|gb|ABB27642.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 886

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 333/892 (37%), Positives = 498/892 (55%), Gaps = 87/892 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y      QK
Sbjct: 6   IRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGSRPYVRAADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K  AI  AW+L T  + L + RLY
Sbjct: 66  CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAITWAWELFTVVWKLPKERLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TVY +D+E+F++WK+ + ++ D I+R    DNFW M ETGPCGPCSEI  D     P  
Sbjct: 126 ATVYQDDDESFQIWKEQTDINPDHILRFGDKDNFWEMGETGPCGPCSEIHID---LTPD- 181

Query: 187 LPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             GS +E       R IE+WNLVF+Q+ +Q+      LPK  +DTGMG ER+  V+Q K 
Sbjct: 182 --GSGKELVNVGDYRVIELWNLVFIQYNRQSDGHLEPLPKKHVDTGMGFERIVAVMQGKG 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG++Y    +  N +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 240 SNYDSDVFQPLFDKITEITGVRYGASLDAPNDIAMRVIADHARTLTFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y+R LGY +P++  L+  L   MG  +PEL+Q +  +   +++E+E 
Sbjct: 300 GYVLRRILRRALRYSRNLGYHQPILHQLVGTLALAMGEVFPELVQRQEAVSAIIKAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ L   ++  L     +++ G  AF+LYDT+G P D+ + +    G   +D 
Sbjct: 360 FIVTLDRGIDLFSELVEKLRASNGKVIAGSDAFRLYDTYGFPFDLTRLMAADEGFE-VDG 418

Query: 416 ISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F   ++EQ++RAR+       +     +  WFS      A+QF+GYD L         
Sbjct: 419 EGFEHCMQEQKNRARSDRREKQRVDDDGAKWQWFS---DVRASQFVGYDHL--------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V S     ++QG          K+ +V D TPFYAE+GGQ GD G
Sbjct: 467 ---------------VHSATITGIRQG--------NGKLLLVLDATPFYAESGGQTGDNG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIF---------VHHAIVER---GILRTEMSLVLTIDYQNR 580
                  RL + D  K  + I          V  + V+     I+  E+++  ++    R
Sbjct: 504 WLENSRYRLHVADTVKDGDAIVHVVSDAFDKVQDSAVQPEDVEIVEQELAVAASVHRTAR 563

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +    NH+ATHL+H AL  ILG HV Q GS ++P+ LRFD +H   +T  E++++E  VN
Sbjct: 564 QDAERNHTATHLMHAALRRILGEHVQQKGSFVSPERLRFDFSHFSKLTDEEIEAVEIAVN 623

Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I +  PVV    +  +DA+A GA A  G KY DRVRVV +     G+ S  LCGGTHV
Sbjct: 624 TQIREAEPVVKHADVLFDDAVAKGALAFFGDKYADRVRVVEIP----GM-SVELCGGTHV 678

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN--VV 757
            + G I L  I+SE+S+ +G+RRIEA+TG+ A   L  +  +L+ +   LK ++G+  VV
Sbjct: 679 DNIGRIGLFKIISEASVASGVRRIEAVTGKAAEKLLWQEYRELQQIRQLLK-AKGDEAVV 737

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSV 812
            +V  + +  ++L+   A+ +    VE L+       +++    ++  +   D + ++  
Sbjct: 738 EKVAGLMDSKKELEKELAESRAAALVEQLTAALQAAPEVSGCRVLAIEVKNNDGETMRQA 797

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD---LARLSAK 861
             AL+ K    + +L  +  E    VL+    D   R  ++D   L R +AK
Sbjct: 798 TMALRDKAPCAVGLLATV--EAGKVVLVSFATDEAVRTCSLDAGALIREAAK 847


>gi|225026503|ref|ZP_03715695.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353]
 gi|224956191|gb|EEG37400.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353]
          Length = 867

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 333/900 (37%), Positives = 501/900 (55%), Gaps = 55/900 (6%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT QKC+R 
Sbjct: 2   YLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRKRVTTCQKCIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           G    D++NVG+T+RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +VY
Sbjct: 62  G----DIENVGKTDRHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDADRLYPSVY 117

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
            ED+EAF +W+   G++ ++I +    DNFW     GPCGPCSEI++D+GE    G PG 
Sbjct: 118 LEDDEAFAIWRDEIGIAPERIFKFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPGC 176

Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
           +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A ++Q+  + +D+D 
Sbjct: 177 TVGCDCDRYMEVWNNVFTQFENDGHNNYTTLKQKNIDTGMGLERLAVIVQDVGSIFDVDT 236

Query: 249 FKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
            + L     +V    Y+ N  + ++ R+I DH+RS++F+I+DGI+P+NEGRGYVLRRI+R
Sbjct: 237 IRSLRDKICEVAKKTYKENEQDDISIRLITDHIRSATFMISDGIMPSNEGRGYVLRRIIR 296

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           RA  + RLLG     +  L   +       YPEL + K  I   +  E+ +F KT+D+GL
Sbjct: 297 RAARHGRLLGIEGKFLAELSKTVIEGSKDGYPELEEKKDFIYNVIIQEEGKFNKTIDQGL 356

Query: 367 VLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
            +L  +   + +  +  L+G  AFKLYDT+G PLD+ ++IL  +G   ++  +F   + E
Sbjct: 357 AILADLEESMKEKGVKELDGQDAFKLYDTYGFPLDLTKEILEEKGYT-VNEEAFQTCMNE 415

Query: 425 QRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           Q+ +AR A       G    ++ S+     +T F+GY+                      
Sbjct: 416 QKEKARSARKTTNYMGADVTVYESIDPSVTST-FVGYE---------------------- 452

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
            T    S +  +    E+ E    GQ   +  D+TPFYA  GGQ  D+G          +
Sbjct: 453 -TQECDSKITVMTTDTELTEALTDGQAGTIFVDETPFYATGGGQHADSGVITCKDGEFVV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K   G   H   V +G+ +   ++ L+++   R   +  HSATHLL  +L T+LG+
Sbjct: 512 EDVVKMLGGKIGHIGHVTKGMFKVGDTVTLSVNKAQRADTAKGHSATHLLQKSLRTVLGN 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q+GS +  D LRFD +H + +T+ EL  +E  VN+ IA++L V T IM+ ++A  +G
Sbjct: 572 HVEQSGSYVDKDRLRFDFSHFQALTAEELAEVEKMVNEKIAEDLTVSTEIMSVDEAKNTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D+VRVV++     G  S   C GTHV  TG I    I+SE+ + AGIRRI
Sbjct: 632 AMALFGEKYGDKVRVVTM-----GDFSKEFCAGTHVPHTGVIKAFKIISETGVAAGIRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     + + +++ L   A   K     +  +++ + +E + L   + K K Q+  
Sbjct: 687 EALTGDGVMKYYLDEEKTLHEAAKAAKAEPHKLAEKIQSMLDEIKALSAENEKLKDQIAK 746

Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            +++       +  D   +   + +VD   L+++ D L+ KI SG+++L       K ++
Sbjct: 747 SEVADVMDQVVEAGDYKVLPVSVKDVDMNALRTLGDDLKGKIGSGVVILAS-DMGGKVNL 805

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++  T+D +            A  L GGGGGGRP+MAQ+GG N        AG+ + L+K
Sbjct: 806 IVTATDDAVKAGAHAGKIIKEAAALVGGGGGGRPNMAQAGGKNP-------AGIKAALEK 858


>gi|256545145|ref|ZP_05472511.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256399186|gb|EEU12797.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 870

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 329/908 (36%), Positives = 515/908 (56%), Gaps = 58/908 (6%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDESLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT   ++D+
Sbjct: 66  SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTVNLEIDK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             L+++VY+ D+EAF +W    G++ D+I+R    DNFW + E GPCGP SEIF D+G  
Sbjct: 122 NLLWVSVYENDDEAFDIWHDEIGIAKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGIE 180

Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + +      PG +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ
Sbjct: 181 KAVDENDNKPG-NDDSDRFMEVWNLVFTQFNKNANKEYIPLAHPNIDTGMGLERMAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K N +++D+ +++I+  E+++  KY+ N  + ++ RVI DH ++ +F+++DGI P+NE 
Sbjct: 240 NKDNIFEVDVNQNIIKEIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     +  ++  +       Y EL   +  I   +  E+E
Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSIVDCVIDSYKVEYDELTNNREKIINIIEKEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F KT+D GL +L+  +  L ++  +IL G  AFKLYDT+G PLD+ ++IL    L  +D
Sbjct: 360 NFQKTIDSGLDILNSYIKELKENNKDILKGKDAFKLYDTYGFPLDLTKEILDENDLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ +E QR+ AR         + E I     +++  T F+GY+             
Sbjct: 419 TKEFDEYMENQRNLARNARKSDAGWSLESINV---DEFKQTDFVGYENFE---------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S +  +    E V     G K  +V D+T FYAE GGQ+ DTG  
Sbjct: 466 -------------INSNIIGLFDSKEKVNFIKKGHKGIIVSDKTSFYAEGGGQVADTGFI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I D  + ++ +VQKK + + +H+  VE G L +  + +  ++ Q R  ++ NH+ATHLL 
Sbjct: 513 ITDDAKARVYNVQKKKD-VILHYVEVEEGKLES-CNALFKVNKQRRLDITRNHTATHLLD 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +L   V Q GS +    LRFD T+   +T  E+K IED VN+ I + LPV   IM
Sbjct: 571 QALRNLLSDEVKQAGSLVDEYKLRFDFTYPNALTKDEIKKIEDEVNEKIREQLPVKKEIM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + +++   GA  L   KY D VRVVSV       +S  LCGG HV+++ EI++  I+ ES
Sbjct: 631 SYKESEKLGAIGLFEDKYKDMVRVVSV-----SDYSKELCGGCHVNNSSEILMFKIIQES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  +GIRRIEAITG++   +L    E + S++  LK +  N++ R + + EE ++L+   
Sbjct: 686 SAASGIRRIEAITGKKVYEYLNNNIELINSISDELKTNPKNILSRAKSLNEEIKQLKDDI 745

Query: 775 AKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            K K + N +D+          I  +N + H     D   L++  + ++ K +  II+  
Sbjct: 746 QKLK-EFNEKDIYKDMESEVKDINGINLLVHKFDNEDLDTLRNFENRIKDKYKDLIIVFA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + K+ K      V++ L D++NA  + +  +K+  GG GGG+ + AQ+GG + +K D+A
Sbjct: 805 TV-KDNKIIFTASVSDSLTDKYNAGKIVKEVSKIT-GGNGGGKKNFAQAGGKDISKLDEA 862

Query: 889 IAGVASFL 896
           +  V   +
Sbjct: 863 LEKVYDLI 870


>gi|295396919|ref|ZP_06807043.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974853|gb|EFG50556.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 880

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 348/924 (37%), Positives = 521/924 (56%), Gaps = 80/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F+Q  GH + PS+SL+P  DP+L++ NSG+   K  F G   P    +T  
Sbjct: 7   AEIRQKWLDFWQSKGHSVEPSASLVPVQDPSLLWINSGVATLKKYFDGSVVPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG T RHHT FEMLGNFS G YFK   I  AW+ LT E    LD 
Sbjct: 67  QKSIRT----NDIENVGVTARHHTLFEMLGNFSIGDYFKAEVIPWAWEFLTDEKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T Y ED E  +LW+K +GLS +  + +   DNFW +   GPCGP +EIF+D+G  
Sbjct: 123 EKLYMTYYPEDTETVELWRKATGLSDNHYVPV--EDNFWDLG-AGPCGPDTEIFYDRGVK 179

Query: 181 ---------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
                    E  PGG      E ERY+EIWN+VF QF      E   L   +IDTGMGLE
Sbjct: 180 YQDLEDSDPEMYPGG------ENERYLEIWNIVFSQFNHMPNGEYVPLKHKNIDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           RM +V+Q+   N++ DLF  +I+  E + T +KY  +    V+++VI DH+R+ +F I+D
Sbjct: 234 RMTSVIQDAPTNFETDLFLPIIKEIETLGTAVKYGDKPETDVSYKVIADHVRAVTFAISD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
             LP+NEGRGY+LRR++RRA+ +AR LG  +  +  L+P +   M   YPE+   +  I+
Sbjct: 294 RALPSNEGRGYILRRLIRRAIMHARRLGIKDNFLTKLVPVVADIMADFYPEVKADQNFIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +++E++RF +T++ G  ++  V+S L  +  ++++G  AFKLYDT+G PL++ Q+ L 
Sbjct: 354 DVIKTEEDRFNETINEGEAIIQEVISTLEAEHNKVMSGAQAFKLYDTYGFPLELTQEYLE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
             G+  +D+  F +A++ QR RARA    S G+   +       L E    + ++GYD L
Sbjct: 414 EVGI-DVDLSGFEEAMKAQRERARAARKDSTGMAVQSE-----VLSEIDVTSSYVGYDQL 467

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                   V + +  IV    +V  A +G +V +V +QTPFYAE
Sbjct: 468 V-----------------------VETRINTIVLGDALVSAAEAGDEVYLVAEQTPFYAE 504

Query: 524 AGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG  + +  +L   + +V +   G  +H   +   I+  + ++ L +D +   
Sbjct: 505 MGGQIADTGDVLDEDGQLIGHVVNVVRAPNGQHLHEVKLAAAIV-LDQTVQLVVDRRRHH 563

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  +LG H +Q GS +T D LRFD +H   +T  EL  +E  VN+
Sbjct: 564 SIEKNHTATHLLHQALKDVLGDHANQAGSLVTADHLRFDFSHFGQVTDEELAEMEAKVNE 623

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            IA+  PVVT + + ++A A+GA AL G KY   VR+V + +      S  LCGGTHV +
Sbjct: 624 AIAEAFPVVTTVTSIDEARAAGAQALFGEKYGSEVRMVDINH-----WSIELCGGTHVGN 678

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760
           T EI L  I SES I AG+RRIEA+T   A      Q+  LK +A+ LK  +  N+V R+
Sbjct: 679 TAEIGLFKITSESGIGAGVRRIEAVTSLAAIQEYKIQENILKQIAANLKAGKFLNIVSRL 738

Query: 761 EEIWEEYRK-LQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDA 815
           ++  EE+++ LQ ++A R K+           +  V   + I   V ++   +L+ + D 
Sbjct: 739 QQFREEHKETLQQLNALRDKMNAQAAGQIFDHVETVGAYTVIAEHVPNRSMDDLRKIADE 798

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
            ++K  S I++L   S + KA++LI V +D +     A DL +  A  + GGGGGGRP M
Sbjct: 799 WKQKGSSDILVL-ATSVDDKANLLIAVGQDAVKAGVKAGDLIKQVAPKI-GGGGGGRPDM 856

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ+GG      ++A+A     + K
Sbjct: 857 AQAGGKKPAGIEEALAFAKEIIGK 880


>gi|260591299|ref|ZP_05856757.1| alanine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536665|gb|EEX19282.1| alanine--tRNA ligase [Prevotella veroralis F0319]
          Length = 888

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 337/938 (35%), Positives = 507/938 (54%), Gaps = 94/938 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++         D+EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I+  E+++G KY     EG N           + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIEEIERLSGKKYNHTFPEGPNGEGINDEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYKLINVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387
            EMG AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   GK E L+G  A
Sbjct: 359 HEMGVAYPELTAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGKTE-LDGKEA 417

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F+L+DT+G PLD+ + ++C      +D   FN+ +E+Q++RAR  ++ + +G     W  
Sbjct: 418 FRLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMEQQKARARNAAV-VENGD----WEI 471

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           ++E  G  +F+GYD       +   RKV  +K                            
Sbjct: 472 VRE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF------------------------- 504

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV+      
Sbjct: 505 ---YEIVLDYTPFYGEMGGQVGDQGVLVNEDETINVIDT-KRENNQSIH--IVKELPKDV 558

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E   +  ID   R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + I
Sbjct: 559 EADFMACIDTDKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKI 618

Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           T  EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV       
Sbjct: 619 TDEELRQVEKLVNEMIRKDYPLDEHRDTPMEEAKEMGAVALFGEKYGDKVRVVRFG---- 674

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL- 745
              S   CGG H  STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L 
Sbjct: 675 --PSCEFCGGIHAKSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLK 732

Query: 746 -----ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
                A  LK      V   + + +E  + +     R  +  V+      +  V+ +  +
Sbjct: 733 AMFNNAKDLKAVLTKFVEENDAMKKEVERFRAQAVDRAAKSLVD--RAETVNGVHVVKAV 790

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARL 858
           +  VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R 
Sbjct: 791 LP-VDPASAKDIVFKVREALPENLVCVLGSVYENRPQLSIMLSDDMVKEHDLNAGKVIRE 849

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +AK++  GGGGG+PH AQ+GG + +  + A+  V   L
Sbjct: 850 AAKLI-KGGGGGQPHYAQAGGKDADGINAAVEKVIELL 886


>gi|154493963|ref|ZP_02033283.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC
           43184]
 gi|154086223|gb|EDN85268.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC
           43184]
          Length = 875

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 353/908 (38%), Positives = 503/908 (55%), Gaps = 78/908 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D+EA   W+K   L    II    +DNFW M +TGPCGPC
Sbjct: 121 NPDRLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKAHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPARVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    V  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTAYGKDKQQDVAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK+ +++G  AF LYDT+G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKN-VISGVDAFTLYDTYGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+   +I  FN  +++Q+ RAR ++  + +G     W  LKE  G   F+GYDL
Sbjct: 418 LILRENGMEA-NIDEFNVEMQKQKDRAR-NAAAIETGD----WVVLKE--GGCNFVGYDL 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                    D ++L                + I Q+ +++         ++V DQTPFYA
Sbjct: 470 FEC------DAEILR--------------YRQIKQKNKVL--------YQIVLDQTPFYA 501

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GDTG  I D   + + D  K+   + VH  +V +       +    I+ + R Q
Sbjct: 502 EMGGQVGDTGWLIADDETVDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINEKKRIQ 558

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V++ 
Sbjct: 559 CECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEK 618

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I  N P+   R M   +A A GA AL G KY D VRVV         +S  LCGGTH+ +
Sbjct: 619 IRANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------NSIELCGGTHIPA 672

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQ-GNVVGR 759
           TG I  L +V ESSI AG+RRIEA+T + A ++     + L+ L A F  V      + +
Sbjct: 673 TGMIGSLRVVGESSIAAGVRRIEAVTAEAAENYTFMLQDSLRELRAMFNNVPNLSQTIKK 732

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD-ALQK 818
             E   E +K    + K K+QL  ++L   K  + N +  +I+      + ++ D A Q 
Sbjct: 733 AIEENAELKKQVSDYVKEKVQLLKKELIA-KAVERNGVK-VIAFRGEASVDAIKDLAFQI 790

Query: 819 KIQSG----IIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPH 873
           K +S     +  + GI   +K +++++++E L+ +  NA  L + +AK++  GGGGG+PH
Sbjct: 791 KGESNTEEKVFFVAGIKDGEKCALMVMLSEPLVAEGLNAGKLVKEAAKLI-QGGGGGQPH 849

Query: 874 MAQSGGPN 881
            A +GG N
Sbjct: 850 FATAGGKN 857


>gi|33864421|ref|NP_895981.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|41018180|sp|Q7V419|SYA_PROMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33641201|emb|CAE22331.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str.
           MIT 9313]
          Length = 892

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 341/915 (37%), Positives = 521/915 (56%), Gaps = 82/915 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 18  SEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRA-TS 75

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD +
Sbjct: 76  SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELTTEVFGLDPK 131

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L ++V+ ED+EA  +W+ + G++  +I+R+   DNFW+   TGPCGPCSEI++D    +
Sbjct: 132 NLVVSVFREDDEAETIWRDVVGVNPKRIMRMDEADNFWASGPTGPCGPCSEIYYDFKPDL 191

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   NN
Sbjct: 192 -GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPNN 250

Query: 244 YDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ D+   LI+ +  + G+ Y+        + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 251 YETDIIYPLIETAAGLAGLDYQKLDEKGKTSFKVIGDHCRAITHLICDGVTASNLGRGYI 310

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF +
Sbjct: 311 MRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFLE 370

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F Q
Sbjct: 371 TLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFEQ 427

Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           A+++QR RA+A ++ +     G  E++   L+    AT+F GY++L              
Sbjct: 428 AMDQQRQRAKAAAVSIDLTLQGAIEQMAAELE----ATRFQGYEVL-------------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---- 533
           ++P           V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G     
Sbjct: 470 EQP---------CCVLALVVNGESAERASAGDSVQIVLDTTPFYGESGGQVGDHGVLSGE 520

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            + G+G+ + + DV +    +FVH   +ERG L     +   +D   RR+   NH+ATHL
Sbjct: 521 GSGGNGVIVTVDDVSRH-RNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHL 579

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++ S + Q GS +  D LRFD   ++ +T+ EL+ IE  +N  I ++  ++  
Sbjct: 580 LQAALKQVVDSGIGQAGSLVDFDRLRFDFHCARAVTAKELEQIEALINGWIMESHDLIVE 639

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+
Sbjct: 640 EMSIQEAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVA 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ESS+ AGIRRIEA+ G    ++L  +DE +K L   LKV    +V RV  + EE +  Q 
Sbjct: 695 ESSVAAGIRRIEAVAGPAVLAYLNERDEVVKKLLERLKVQPSEIVERVTSLQEELKSSQK 754

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            L  A+ +L +        +   V     +++ +D  E   + +A Q     G++  +G 
Sbjct: 755 ALTAARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQ-----GLLDQLG- 808

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHM 874
                A+V++    D  D    + +A    +++  G   G                RP++
Sbjct: 809 ---DGAAVVLGGLPDPSDEGKVILVAAFGKQLIAQGQQAGKFIGSIAKRCGGGGGGRPNL 865

Query: 875 AQSGGPNGNKADQAI 889
           AQ+GG +G   D A+
Sbjct: 866 AQAGGRDGAALDGAL 880


>gi|290890700|ref|ZP_06553770.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429]
 gi|290479675|gb|EFD88329.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429]
          Length = 885

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 335/923 (36%), Positives = 504/923 (54%), Gaps = 75/923 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  FL+FFQ  GH++ PS SLIP +DP+L++ NSG+   K  F G   P    +T
Sbjct: 5   NSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
             QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+LLT    + +
Sbjct: 65  NAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPEWYGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +L+IT Y  D E  +LW+  +   A   I    +DNFW + E GP GP +E+FFD+G
Sbjct: 121 EPEKLFITYYPRDTETKELWESQADFVAGHTI--PQDDNFWDIGE-GPSGPDTEVFFDRG 177

Query: 181 -----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225
                      E  PGG      E ERY+EIWN+VF QF       +  +   LP  +ID
Sbjct: 178 PKFQNLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNID 231

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSS 283
           TGMGLER+ ++ +    N++ DLF  +I+  EQ++G +Y    +  V+ +VI DH+R+ +
Sbjct: 232 TGMGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVIADHIRAVT 291

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG LP N GRGYV+RR++RRA+ + R LG  +P +  L+P +   M + YPE+++ 
Sbjct: 292 FAISDGALPGNTGRGYVIRRLLRRAVMHGRKLGIEKPFLTQLVPIVGKIMEAYYPEILEN 351

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIM 401
           +  I   ++SE+ RF KTL  GL LLD ++    KD    ++G  AFKL+DT+G PL++ 
Sbjct: 352 EDKIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATHISGKDAFKLFDTYGFPLELT 411

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGY 460
           ++     GL  +D  SF++ +++Q++RAR     L + G  ++   SLK     + ++G+
Sbjct: 412 EEQAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQDEALMSLKV---PSVYVGW 467

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                            ++  +D      + + AI+   + V++A +GQK  ++FD+TPF
Sbjct: 468 -----------------KQSSVD-----DAKIAAIIVDDQQVDDAKAGQKALLIFDKTPF 505

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ D G   A    +  Q+TDVQ       +H A +    L+    + L +D  
Sbjct: 506 YAEMGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISD-LKIGQKVNLRLDMH 564

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
               +S NH+ATHLL  AL  ++  ++ Q GS + PD LRFD TH  P+ +  L  IED 
Sbjct: 565 RHVAVSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDL 624

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  IA  LPV     + E A   GA A+ G KY  +VRVVS+     G  +    GGTH
Sbjct: 625 VNQKIADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTH 679

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVV 757
             +T E+ L  IVSES I AG RRIEA+TGQ A   L   ++ LK  A FL   +  +V 
Sbjct: 680 AKNTSELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVP 739

Query: 758 GRVEEIWEEYRKLQ-LIHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
            ++ ++    + +Q  + +      NV  D    K  +    S+I +++D++ +  +   
Sbjct: 740 DKIVDLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKI 799

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHM 874
           + +  Q  +  L+ I+       L+V      +   A ++ + +S K+   GGGGGRP  
Sbjct: 800 VDEWRQRAVSDLIIIATNNNGKALLVAASAKPNEVKAGNVVKAISPKI--QGGGGGRPDF 857

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ+GG N      A+A V+ +L+
Sbjct: 858 AQAGGKNPAGIANALASVSEYLE 880


>gi|312195530|ref|YP_004015591.1| alanyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226866|gb|ADP79721.1| alanyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 883

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 345/909 (37%), Positives = 499/909 (54%), Gaps = 60/909 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL  F++ GH ++PS+SLI   DPTL+  N+GMVPFK  F G   P     T+V
Sbjct: 4   AEIRRRFLNHFEQRGHLVVPSASLI-AEDPTLLLVNAGMVPFKPYFLGDLTPPAPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR      D+DNVG+T RH +FF+M GNFSFG YFK   I  A++LLT+ +      
Sbjct: 63  QKCVRT----VDIDNVGQTARHASFFQMCGNFSFGDYFKAEVIPWAFELLTEGYGFKPDD 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+ TVY +D+EA ++WK +  L A++I R    DN+WSM   GPCGPCSEI+FD+G    
Sbjct: 119 LWATVYLDDDEAEEIWKGL--LPAERIQRRGKEDNYWSMGVPGPCGPCSEIYFDRGPAY- 175

Query: 185 GGLPGSSEEGE-RYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGLERMATVLQ 238
            G  G  E  E RY+E+WNLVFMQFE+ +     F     LP  SIDTGMGLERMAT+LQ
Sbjct: 176 -GRDGGPEADENRYLEVWNLVFMQFERGEGAGYEFPILGDLPAKSIDTGMGLERMATLLQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N Y+ID+ + ++  + ++TG  Y  +  + V  RVI DH R+++ LIADG++P+NEG
Sbjct: 235 GVENLYEIDISRPVLDRAGELTGKTYGAQHGDDVRLRVIADHTRTAAMLIADGVVPSNEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+   RLLG  EP+M +L   + + MG  YPEL+     I      E+ 
Sbjct: 295 RGYVLRRMLRRAVRNVRLLGGREPVMENLFGVVQSAMGPIYPELVDRAAAITAVAVGEEL 354

Query: 357 RFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
            F +TL  G  + D   G     G  + L G+ AF+L+DT+G P+D+  ++   +GL  +
Sbjct: 355 AFLETLRTGTTIFDVAVGKAKSTGAAQ-LAGEEAFQLHDTYGFPIDLTLEMAAEQGLT-V 412

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGY-DLLRGSKFMKE 471
           D   F + ++ QR  A+A       G  +  ++  +  + G T F GY +L R       
Sbjct: 413 DEPGFRRLMDRQRELAKADRASRRIGNVDLSVFRPILARSGPTSFTGYTELTR------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T  V  +V A    G  V  A  G+ V VV D TPFYAE+GGQ  D 
Sbjct: 466 -------------TATVVGLVSAATGLG--VPAAGEGEDVGVVIDSTPFYAESGGQEADL 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + DG  ++I DVQK    + +H   V RG +R    + +T+D   RR +S +H+ATH
Sbjct: 511 GRFVFDGGEVEIIDVQKPIPDLVLHRGKVVRGEIRLGAEVEVTVDADRRRAVSRSHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H A    LG   +Q GS  +P  LRFD      I +A L  +ED VN++  ++L V  
Sbjct: 571 LVHTAFRRALGESATQAGSLNSPGRLRFDFHALGSIPAAVLADVEDEVNEVALRDLDVTA 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + ++++A   GA AL G KY +RVRVV V     G +S  LCGGTHV+ + ++  + ++
Sbjct: 631 FVTSQDEARRIGAMALFGEKYGERVRVVDV-----GDYSRELCGGTHVARSAQLGAVKLL 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--K 769
           SESSI AG RR+E + G  A  +L  +   +  L+  LKV    +  RV +I    R  +
Sbjct: 686 SESSISAGTRRVEGLVGLDAFRYLAREHLLVSQLSGLLKVRADELPDRVSDIVTRLRDAE 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE-----LKSVMDALQKKIQSGI 824
            +L   + +  L       +   DV  ++ + +E  +        K V+D   + I    
Sbjct: 746 RELERVRGEAVLAGAAGLANSAVDVGGVALVAAEAPNGTSPDDLRKLVLDVRGRLIDRPA 805

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+    +  ++A +++  TE    R   A DL + ++  L GG GGG+P +AQ GG +  
Sbjct: 806 IVAAASAGGERAFLVVATTEGSRGRGLKAGDLVKAASAEL-GGSGGGKPDVAQGGGSDIT 864

Query: 884 KADQAIAGV 892
              +A+A V
Sbjct: 865 GVGRALAKV 873


>gi|260171843|ref|ZP_05758255.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315920155|ref|ZP_07916395.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694030|gb|EFS30865.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 872

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 344/923 (37%), Positives = 507/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEYLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD  +      GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKASGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL    +  ++I  FN+ +++Q+ RAR ++  + +G     W  LKE  G T+F+GY  
Sbjct: 418 LILRENEMT-VNIDEFNEEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +  N+P+   R +  E+A   GA AL G KY D+VRV+          S   CGGTHV
Sbjct: 617 ARVRANIPLKEYRNIPIEEAKELGAIALFGEKYGDKVRVIQFG------SSIEFCGGTHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + L  L A F       +  
Sbjct: 671 AATGNIGMVKIMSESSVAAGVRRIEAYTGARVEELLDTVQDTLSDLKALFNNAPDLGIAI 730

Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           R        +++  E++ K +    K +L  N++++  H I  V F + + +EV    +K
Sbjct: 731 RKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGSIDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +    A+  V
Sbjct: 844 GQPHFATAGGKNTDGLPAAVEKV 866


>gi|15612227|ref|NP_223880.1| alanyl-tRNA synthetase [Helicobacter pylori J99]
 gi|6707753|sp|Q9ZJY5|SYA_HELPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4155760|gb|AAD06738.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 847

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 334/884 (37%), Positives = 495/884 (55%), Gaps = 69/884 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++TG+ Y      + RV+ DH R+ +FL+A  +    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTGLDYASEFQPSFRVVADHARAVAFLLAQEVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNVHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L+HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y   +F+GY+    L     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECLANALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+V V+ ++TPFYAE GG +GD G    D
Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGTLFKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q    K 
Sbjct: 680 SGVRRIEAVCGKAFYQLTKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KA 733

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            + +   DL   KI  VN +  ++ + D KE+   +D L+ K +   ++ +   KE +  
Sbjct: 734 PVSM---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHEK--LLAIVFKKENERI 785

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            L    +++  + NA   A   A++L GG GGGR   A +GG +
Sbjct: 786 TLACGVKNVPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKD 826


>gi|186681072|ref|YP_001864268.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|205830164|sp|B2J876|SYA_NOSP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|186463524|gb|ACC79325.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 880

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 344/907 (37%), Positives = 519/907 (57%), Gaps = 55/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR TFL FF +  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P ++  TT 
Sbjct: 11  NEIRNTFLNFFAQRSHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F    + 
Sbjct: 70  QKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGFSPQN 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+++D+EAF +W+   G+   +I R+  +DNFW    TGPCGPCSEI++D      
Sbjct: 126 LVVSVFEDDDEAFAIWRDQIGVPVARIKRLGEDDNFWVSGPTGPCGPCSEIYYD-FHPER 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GDENIDLEDDSRFIEFYNLVFMQYNRDVLGNLTPLQNKNIDTGMGLERMAQILQKVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQ + Q+ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGYVL
Sbjct: 245 ETDLIFPIIQTAAQIAGIDYHSSDEKTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G +      +  +      SAYP + Q +  I+  L+ E+  F +T
Sbjct: 305 RRLIRRVVRHGRLIGISGEFTTQVAESAIALSESAYPNVRQREAAIKAELQREESNFLRT 364

Query: 362 LDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           LDRG  LL+ ++  +   G  +I +G+ AF LYDT+G PL++ Q++     L  +D   F
Sbjct: 365 LDRGEKLLEEIIQEVKQQGSTQI-SGESAFTLYDTYGFPLELTQEVAEENNLT-VDAEGF 422

Query: 419 NQALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
              +E Q+ R R AH ++ L   T +     L E    T+F+GY                
Sbjct: 423 EAQMEIQKGRGRDAHETIDL---TVQGSLDKLAEHIQVTEFLGY---------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +  ++I++AI+ +G   EEA +G +V++V D+TPFYAE+GGQ+GD G   G
Sbjct: 464 -------TQSAATAIIEAILLEGVSQEEAEAGTQVQIVLDKTPFYAESGGQIGDRGYISG 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DGI +++ DV+K+++  FVH   +ERG LR    +   ID   RR+   NH+ATHLL  A
Sbjct: 517 DGIVVRVEDVKKESD-FFVHFGRIERGTLRVGDRVTAQIDPACRRRAQANHTATHLLQAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  I+   +SQ GS ++ D LRFD    + +T+ E++ +E+ VN  IA+       ++  
Sbjct: 576 LKKIVDDGISQAGSLVSFDRLRFDFNCPRALTAEEVQQVEEQVNSWIAEAHAAKVEVLPL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A A GA A+ G KY D VRV+     D    S  LCGGTHVS+T EI +  I+SE+ +
Sbjct: 636 AEAKAKGAVAMFGEKYGDEVRVI-----DFPNVSMELCGGTHVSNTAEIGVFKIISEAGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  Q     
Sbjct: 691 ASGVRRIEAVSGPAILDYLNLRDKVVKDLSDRFKVKPEELPDRITSLQSELRNSQKELET 750

Query: 777 RKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K+QL +        +   + D   +   +  VD + LK+  + L +KI +G ++L  + 
Sbjct: 751 LKVQLAIAKSDSLLQTAETVGDHKIIVAQLENVDPESLKTAAERLLQKIGNGAVVLGSVP 810

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  K S++   + ++  +   A       AK+  GGGGGGRP++AQ+GG + +K   A+ 
Sbjct: 811 EADKVSIVAAFSPEVNKKGLQAGKFVGAIAKIC-GGGGGGRPNLAQAGGRDASKLPDALG 869

Query: 891 GVASFLK 897
              S LK
Sbjct: 870 QAESDLK 876


>gi|29349403|ref|NP_812906.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|41018213|sp|Q8A0M6|SYA_BACTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29341312|gb|AAO79100.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 872

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 345/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           LIE+ ++ E+E F +TL+ G+ LLD   G     GK EI +G  AF LYDT G PLD+ +
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL   G+  ++I  FN  +++Q+ RAR ++  + +G     W +L+E  G T+F+GY  
Sbjct: 418 LILRENGMT-VNIEEFNAEMQQQKQRAR-NAAAIETGD----WVTLRE--GTTEFVGY-- 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                               D T   +SI+  + I Q+ + +         ++V D TPF
Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDCTPF 499

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D   R
Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN
Sbjct: 557 AACAANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616

Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV
Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFG------SSIEFCGGIHV 670

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG---NV 756
           ++TG I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +      +
Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAPDLGIAI 730

Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              +EE        E+Y K +    K +L  N++++  H I  + F + + +EV    +K
Sbjct: 731 RKYIEENAGLKKQVEDYMKEKEASLKERLLKNIQEI--HGIKVIKFCAPLPAEV----VK 784

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869
           ++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  GGGG
Sbjct: 785 NIAFQLRGEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 843

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+PH A +GG N +  + AI  V
Sbjct: 844 GQPHFATAGGKNTDGLNAAIEKV 866


>gi|224542880|ref|ZP_03683419.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524210|gb|EEF93315.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM
           15897]
          Length = 868

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 341/911 (37%), Positives = 506/911 (55%), Gaps = 74/911 (8%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67
           R  FLE+F+K GH + PS+SLIP +DPTL++ N+G+   K  F G EKP    +T  QK 
Sbjct: 10  RALFLEYFKKQGHMVEPSASLIPHDDPTLLWINAGVAALKKYFDGTEKPACNRITNAQKS 69

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRL 125
           +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT E     D+ +L
Sbjct: 70  IRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKTEAIHFAWEFLTGEEWLAFDKDKL 125

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YITVY +DE+A+ +W K  G+    I++  T DNFW +   GP GP SEIF+D+GE    
Sbjct: 126 YITVYTDDEDAYNVWTKECGVDPSHILK--TADNFWEIG-AGPGGPDSEIFYDRGEKYDP 182

Query: 186 GLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMATVL 237
              G        E +RY+EIWN+VF QF+     ++++   LP  +IDTGMGLER+ +++
Sbjct: 183 DHIGERLFFEEMENDRYVEIWNIVFSQFDCDPTIDRKDYKELPHKNIDTGMGLERITSII 242

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           QE   N+D DLF  +I A+E++  +KY  + +  +RVI DH+R+ +F ++DG +    GR
Sbjct: 243 QEGETNFDTDLFLPIIHATEELADVKYAEDKMA-YRVIADHIRTVTFALSDGAMFDRAGR 301

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y + +G  +P +  L+  +   M   Y  L +    ++E ++ E+  
Sbjct: 302 GYVLRRILRRAVRYGKNIGIDKPFLYTLVDVVVDNMKEFYDYLPEKAEFVKEAVKKEEVA 361

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL +G   +  V++H   D++++G  AF LYDT+G PL++  +I    G   +D   
Sbjct: 362 FHKTLSQGEKKIKDVIAH-SDDKMIDGSTAFMLYDTYGFPLELTIEIAEESGFT-VDSEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   ++ Q+ RARA      S  ++KI   L +    + F+ YD                
Sbjct: 420 FQVEMKAQQDRARAARGERESMASQKI--DLMDFTTPSTFV-YD---------------- 460

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                  T    + V  + + GE V+E     + E++ + T FYAE GGQ  DTG A  D
Sbjct: 461 -------TAPCKTTVIGLFKDGEKVDELTD--EGEIIVETTNFYAEMGGQCADTGSAHSD 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++T+V K   G  +H+  +  G +    ++ LT+D   R  +  NH+ATHLL  AL
Sbjct: 512 QFDAEVTNVLKAPNGQHLHYIKLTSGSVHVGDTVELTVDTARRTLIENNHTATHLLDAAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV Q GS +  + LRFD TH   +T  EL ++ED VN+ I + + V  + M +E
Sbjct: 572 KNVLGSHVGQAGSYLDENRLRFDFTHPSKMTKEELTAVEDMVNEYIFKGVDVDVKEMPKE 631

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +AI++GA AL   KY D VRVV V        S  LCGGTHVS+T +I L  I  E+S+ 
Sbjct: 632 EAISAGATALFDEKYGDVVRVVRVG-----DFSVELCGGTHVSNTAKIGLFKIEMETSVG 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE-----------EIWE 765
           +G+RRIEA+T  RA   L   +E L+ + + LK +  N +V + E           EI  
Sbjct: 687 SGVRRIEAVTNVRAYKALRKSEETLEEVGTVLKANDLNKIVEKAESTMTTLNAMKKEIET 746

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              KL  + AK +    VE+++  K       +H+  E D+   K +    + +++SGI+
Sbjct: 747 LTSKLNALEAKNQAS-QVEEVNGVKF----LYTHV--EKDNAAAKQMAFDFRDQLESGIV 799

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++   + E K S  + +T+DL + + A  L +   +VL  G GGG+P  AQ G P  +K 
Sbjct: 800 VVTS-TFEGKNSYFVGITKDLTNTYKAGVLVKAMNEVL-DGRGGGKPDFAQGGAPTLDKI 857

Query: 886 DQAIAGVASFL 896
           D+AI  V S L
Sbjct: 858 DEAITAVKSKL 868


>gi|294672801|ref|YP_003573417.1| alanine--tRNA ligase [Prevotella ruminicola 23]
 gi|294472795|gb|ADE82184.1| alanine--tRNA ligase [Prevotella ruminicola 23]
          Length = 887

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 336/935 (35%), Positives = 500/935 (53%), Gaps = 93/935 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR +F +FF+   H ++PS+ ++  +DPTLMFTN+GM  +K+I  G   P  +    
Sbjct: 3   ANEIRDSFKKFFESKQHAIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRRAD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI +AW+ L     L+  
Sbjct: 63  TQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLVDVLKLNPE 122

Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            LY+TV++         D+EA K W K   +  D II    +DNFW M +TGPCGPCSEI
Sbjct: 123 DLYVTVFEGSPEENIPRDDEAAKYWAK--HVPEDHIINGNKHDNFWEMGDTGPCGPCSEI 180

Query: 176 FFDQGECIPGGLPGSS------EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
             D          G +      ++  + IEIWN+VFMQF ++       L    IDTGMG
Sbjct: 181 HVDSRTPEQKAASGKTGRELVNQDDPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMG 240

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------EGNNI-VNHRVI 275
            ER+  ++Q K +NYD D+F+ +I+A +Q+TG+KY             E ++I V  RV 
Sbjct: 241 FERLVRMMQGKHSNYDTDVFQPIIKAEQQITGLKYFTFEEETESPISKEQDDINVAMRVC 300

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   +  +  L+P L  EMG
Sbjct: 301 ADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQKDGFLYKLVPTLVAEMG 360

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLY 391
            A+PEL   + L+ + ++ E+E F +TL++G+ +L+  ++ L   GK E L+G  AF+L+
Sbjct: 361 GAFPELEAQQQLVTKVIKEEEESFLRTLEKGIGMLNDAMNTLKAEGKTE-LDGVQAFRLF 419

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G PLD+ + ++C      ++   FN  +++Q+ RAR       +      W  L   
Sbjct: 420 DTYGFPLDLTE-LICRENGFTVNEEQFNVEMQKQKDRARN-----AAAVENSDWVELAA- 472

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G  QF+GYD       +   RKV  +K                             +  
Sbjct: 473 -GEQQFVGYDYTEYECHIIRYRKVTQKK----------------------------NEFY 503

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E+V D TPFY E GGQ+GD G  + +   + I D  K+  G  VH  IV++         
Sbjct: 504 ELVLDNTPFYGEMGGQVGDCGVLVNEAETINIIDT-KRENGQSVH--IVKQLPKDPAAQF 560

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  +D   R   + NH+ATHLL +AL  ILG HV Q GS ++PD LRFD +H + +T  +
Sbjct: 561 MACVDTDKRNASAANHTATHLLDYALKQILGDHVEQKGSFVSPDTLRFDFSHFEKVTDEQ 620

Query: 632 LKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           L+ +E  VND+I Q++ +   R +  ++A   GA AL G KY D+VRVV          S
Sbjct: 621 LREVERMVNDMIRQDIHIDEHRDVPFDEAKKLGAIALFGEKYGDKVRVVRFG------PS 674

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL- 749
              CGG H SSTG I    I+SESS+ AGIRRIEA TGQ     L   ++ LK++ +F  
Sbjct: 675 CEFCGGIHASSTGRIGFFKIISESSVAAGIRRIEAKTGQECEELLYQTEDILKAVKAFFN 734

Query: 750 --KVSQGNVVGRVEE---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
             K  QG +   +EE   + +E    Q    +R  +  V+     ++  V  +S ++  +
Sbjct: 735 NAKDLQGVIKKYIEEHDSMKKEIEAFQAQAVERAAKQLVD--KAREVNGVKVVSAVLP-M 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862
           +    K +   ++  ++  ++ ++G     K  + I++++D++     NA  + R +AK+
Sbjct: 792 NPAAAKDLAFKIRAAVEGSLLCVLGTHDNNKPQLSIMMSDDMVSDHGLNAGQMVREAAKL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  GGGGG+PH AQ+GG N +    A+  V    K
Sbjct: 852 I-QGGGGGQPHFAQAGGKNADGLSAAVDKVLELAK 885


>gi|315503215|ref|YP_004082102.1| alanyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409834|gb|ADU07951.1| alanyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 893

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 350/935 (37%), Positives = 514/935 (54%), Gaps = 87/935 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I+  FL  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   T
Sbjct: 2   KTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARAT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL TK      
Sbjct: 62  SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAGG 117

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD  R++ TVY +D+EA+ +W+  +G+ A++I+R    DNFWSM   GPCGPCSE+++
Sbjct: 118 FGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELYY 176

Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGL 230
           D+G     G  G  E  E RY+E WNLVFMQFE+     +E F     LP  +IDTGMGL
Sbjct: 177 DRGPAY--GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  K ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           +S  LI DG+ P+NEGRGYVLRRIMRRA+   RLLGY +  +  LLP     M  +YPEL
Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397
            +    I +   +E++ F  TL  G  +LD  ++     GK   L+GD AF+L+DT+G P
Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGK-AALSGDKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456
           +D+  +I   +GL  +D   F + + +QRSRA+A +    +G T+   + S+ +  G  +
Sbjct: 414 IDLTLEIAAEQGLQ-VDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GY     ++  +E R                  V+A++  G  V  AV G  +E+V D
Sbjct: 473 FTGY-----TELSRESR------------------VRALLSGGAAVSAAVEGDTIELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R+  +    ID
Sbjct: 510 TTPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L  +E
Sbjct: 570 VSRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+++  +L V   + ++E+A   GA AL G KY +RVRVV V     G ++  LCGG
Sbjct: 630 QQVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGG 684

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+ + ++ L+ I+SE+S+ +G+RRIEA+ G  A   L  +   +  LA   +V    V
Sbjct: 685 THVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQV 744

Query: 757 VGRVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             RVE+   + R    +L+ + A+  L       +  K  DV  ++++ +E       + 
Sbjct: 745 ADRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAK--DVRGVAYVGTEAPEGAAAND 802

Query: 813 MDALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
           +  L ++I+  I      ++ V      KAS+++ V +    R  +A DL + +      
Sbjct: 803 VRTLAQEIRGRIDAARPAVVAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS---- 858

Query: 866 GGGGGRPHMAQSGGPNGNKA-------DQAIAGVA 893
           G GGG   +AQ GG    +A       ++A+AG A
Sbjct: 859 GRGGGSDDLAQGGGLPATEAPNLLVTVERAVAGTA 893


>gi|325853118|ref|ZP_08171267.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325484492|gb|EGC87413.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 888

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 338/940 (35%), Positives = 510/940 (54%), Gaps = 98/940 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY     EG N           + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   E   L+G  AF
Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + ++C      +D   FN+ + +Q++RAR  ++ + +G     W  L
Sbjct: 419 RLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMAQQKARARNAAV-VENGD----WEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV++     +
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNVK 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFG----- 674

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 675 -PSCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQG--NVVGR-VEEI------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
               ++    V+ R VEE        E++R   +  A + L   VE      + D   + 
Sbjct: 734 MFNNAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVE------MVDGVHVI 787

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLA 856
             +  VD    K ++  +++ +   ++ ++G   + +  + I++++D++     NA  + 
Sbjct: 788 KAVLPVDPASAKDIVFKVRQSLPEKLVCILGSVYDNRPQLSIMLSDDMVKEHGLNAGKII 847

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           R +AK++  GGGGG+PH AQ+GG + +    A+  V   +
Sbjct: 848 REAAKLI-KGGGGGQPHYAQAGGKDADGVSAAVDKVMELI 886


>gi|182439827|ref|YP_001827546.1| alanyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780491|ref|ZP_08239756.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|205830221|sp|B1W3I1|SYA_STRGG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|178468343|dbj|BAG22863.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660824|gb|EGE45670.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 889

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 349/923 (37%), Positives = 511/923 (55%), Gaps = 80/923 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH  +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+V
Sbjct: 4   AEIRRRWLSFFEERGHTAVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  +L+ITVY +D+EA ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + +E F     LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + ++  + ++TG++Y  E +  V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGAENSTDVSLRVVADHIRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPELI  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F K L  G  +L+  ++       ++L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKALKGGTNILETAVTETKAAGGQVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR +A+A +    +G  +   +  + +  GAT+F GY  L G   
Sbjct: 418 LS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYASLAGE-- 474

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               S+IV  +V  G     A  G +VEVV D+TPFYAE GGQL
Sbjct: 475 --------------------STIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG   +  G  +++ DVQK   G+ VH  +V+ G +     +  +ID   RR ++  H
Sbjct: 514 ADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++++ L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKI 741

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEV----DSKELKSV 812
               ++   +  +  +E     K+            DV   + +  +V     + +L+ +
Sbjct: 742 AG--MLGKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGTALVTGQVPDGTSADDLRKL 799

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +  ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGG
Sbjct: 800 VLDVRGRIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892
           G+P +AQ GG N      A+A V
Sbjct: 859 GKPDVAQGGGTNPAAIGDAVAAV 881


>gi|312870442|ref|ZP_07730562.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311093999|gb|EFQ52323.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 886

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 331/927 (35%), Positives = 511/927 (55%), Gaps = 94/927 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FFQ++GH+++PS SL+P NDPTL++ NSG+   K  F G+  P    +T+ 
Sbjct: 10  AQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMTSS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT +  F  D 
Sbjct: 70  QKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGFDP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +E+F+D+G  
Sbjct: 126 ARLYITYYPKDHDAYNKWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEVFYDRGQE 181

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 182 FNNLAEDDPESYPGG--ENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  +I Q +    G +Y  +    V  ++I DH+R+ +F I DG LP
Sbjct: 240 IFENAPTNFETDLFMPIIKQVAALSAGKQYGADKADDVQFKIIADHIRTITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  L+P +   M   YPE++Q    I   ++
Sbjct: 300 SNMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V++   ++    ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLNLLNSVIADAKQNCSNQIDGRTAFKLYDTYGFPIELTKEYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR A  +  G G    +W   KE    ++++GY         
Sbjct: 420 T-VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGY--------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQL 528
                        DLT   + ++  +   G+  + A  S Q +EV+FD TPFYAE GGQ+
Sbjct: 467 ------------TDLTVDGAKVI-GLAHDGQQADSAAPSDQNIEVIFDTTPFYAEMGGQV 513

Query: 529 GDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTIDYQ 578
            DTG  I + G ++ ++ DVQ         HA  ++ + R E++          L +D  
Sbjct: 514 ADTGDIIDNYGEKVGRVVDVQ---------HAPNQQNLHRVELTSPIKKGARYKLVVDRA 564

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
              ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +L ++E  
Sbjct: 565 RHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAM 624

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ I + +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG H
Sbjct: 625 VNEQIFKEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDH 679

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ----- 753
           V +T E+ L  IVSE  + AG+RRIEA+T   A   L  ++  L+ +A  LK +Q     
Sbjct: 680 VKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAYDFLQKRNAMLEEVAGDLKAAQIKEVP 739

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKS 811
             V    EE+ +  ++++ + AK   Q   NV D    +      ++  +      +L+ 
Sbjct: 740 HQVANLQEELKQANKQVEALQAKIAAQQANNVFD-DVQETKKGKLIAAEVKVAGMGQLRQ 798

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
           + D+ + K  S +++L G + + KA++L+ V++  +     A DL +  A  +  GGGGG
Sbjct: 799 LADSWRAKGLSDVLVL-GTANDGKANLLVAVSDGKVKAGLKAGDLIKAIASAI-KGGGGG 856

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           RP++AQ+GG +        AG+ + LK
Sbjct: 857 RPNLAQAGGKDP-------AGIPAALK 876


>gi|239986424|ref|ZP_04707088.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291443371|ref|ZP_06582761.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291346318|gb|EFE73222.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 889

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 350/927 (37%), Positives = 515/927 (55%), Gaps = 76/927 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH  +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+V
Sbjct: 4   AEIRRRWLSFFEERGHTAVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  +L+ITVY +D+EA ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + +E F     LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + ++  + ++TG++Y  E    V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPELI  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F K L  G  +L+  ++       ++L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKALKGGTNILETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR +A+A +    +G  +   +  + +  GAT+F GY  L G   
Sbjct: 418 LS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAGE-- 474

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               S+IV  +V  G     A  G +VEVV D+TPFYAE GGQL
Sbjct: 475 --------------------STIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG   +  G  +++ DVQK   G+ VH  +V+ G +     +  +ID   RR ++  H
Sbjct: 514 ADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++++ L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKI 741

Query: 768 RKL--QLIHAKRKLQ-------LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMD 814
             +  +L  A+++++       L           DV  ++ +  +V     + +L+ ++ 
Sbjct: 742 AGMLGKLKDAEKEIEKFRAEKVLAAAAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVL 801

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871
            ++ +IQ G   +V +        L V+  +   R     A DL R +AK L GGGGGG+
Sbjct: 802 DVRGRIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGK 860

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P +AQ GG N      A+A V   + +
Sbjct: 861 PDVAQGGGTNPAAIGDAVAAVERLVSE 887


>gi|257413376|ref|ZP_04742849.2| alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203713|gb|EEV01998.1| alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 778

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 310/743 (41%), Positives = 440/743 (59%), Gaps = 48/743 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT 
Sbjct: 13  NELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 72

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ R
Sbjct: 73  QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIHWSWEFLTQVLGLEEDR 128

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFFD 178
           LY ++Y ED+EAF++W K  G+ A+KI R   +      DNFW     GPCGPCSEI++D
Sbjct: 129 LYPSIYGEDDEAFEIWNKEVGVPAEKITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 187

Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V
Sbjct: 188 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELAQKNIDTGMGLERLAVV 247

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     +++G KY+ + +  V+ R+I DH+RS++F+I+DGI+P+N
Sbjct: 248 MQDVDSVFDIDTMKAIRDKVCEMSGKKYQVDALDDVSIRLITDHIRSATFMISDGIMPSN 307

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E
Sbjct: 308 EGRGYVLRRIIRRAARHGRMLGIDGIFMAKLAATVINESKDGYPELEEKKDFIFKVLSQE 367

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+FGKT+D+GL +L  +   +  D  ++L+G+ AFKLYDT+G P+D+ Q+IL  +G + 
Sbjct: 368 EEKFGKTIDQGLSILSDMEKQMEADGVKVLSGENAFKLYDTYGFPMDLTQEILEEKGFS- 426

Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F +A+E QR+ AR A  +    G  E ++ S+      T+F+GYD L        
Sbjct: 427 VDEEGFKKAMEVQRTTARKARKVTNYMGADETVYESVDPSV-TTEFVGYDSLN------- 478

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                C+           S +  +  + EIVE    G+   V+ +QTPFYA  GGQ GD 
Sbjct: 479 -----CK-----------SKITVLTTETEIVEALSDGEVGTVIVEQTPFYATMGGQQGDK 522

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         Q+ D  K   G   H   +  G+++T     L++D   R ++  NHSATH
Sbjct: 523 GIIRTAAGEFQVEDTIKLLGGKVGHVGKMISGMMKTGDEADLSVDAALRAKICKNHSATH 582

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS    +  RFD +H   +T  EL+ +E  VND IA+ +PV T
Sbjct: 583 LLQKALREVLGTHVEQAGSYQDGERTRFDFSHFAAMTPEELEKVEKIVNDKIAEAIPVRT 642

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  ++A  +GA AL G KY + VRVVS+     G  S   CGGTHV +T EI    I+
Sbjct: 643 DVMTVDEAKKTGAMALFGEKYGETVRVVSM-----GDFSKEFCGGTHVKNTSEIAAFKII 697

Query: 712 SESSIRAGIRRIEAITGQRARSH 734
           SE+ + AG+RRIEA+TG    ++
Sbjct: 698 SENGVAAGVRRIEALTGDNVFAY 720


>gi|108563608|ref|YP_627924.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|122386244|sp|Q1CS22|SYA_HELPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|107837381|gb|ABF85250.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 847

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 341/881 (38%), Positives = 492/881 (55%), Gaps = 63/881 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG    P     T+ Q
Sbjct: 3   IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPHPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           ++EQ  R++A       G  +   FS +   Y   +F+GY+               C   
Sbjct: 416 MQEQVKRSKAS----WKGKQDNADFSAILNAYAPNEFVGYETTE------------C--- 456

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
           P        S  K I+       EA   Q+V V+ ++TPFYAE GG +GD G    D   
Sbjct: 457 PAKALGFFDSDFKEII-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEE 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +
Sbjct: 510 AAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREV 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LGSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A 
Sbjct: 568 LGSHVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNAQIFKHLNSHVEHMPLNQAK 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+
Sbjct: 628 DKGALALFGEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G+        + ++LK+  + LK    +V+  + ++ E  +  Q      K  
Sbjct: 683 RRIEAVCGKAFYQLAKEESKELKNAKTLLK--NNDVIAGINKLKESVKNSQ------KAP 734

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           ++V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+    KE +   L 
Sbjct: 735 VSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERITLA 788

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              ++   + N    A   A++L GG GGGR   A +GG +
Sbjct: 789 CGVKNAPIKANV--WANEVAQIL-GGKGGGRDDFASAGGKD 826


>gi|308183349|ref|YP_003927476.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308065534|gb|ADO07426.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 847

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 316/837 (37%), Positives = 469/837 (56%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RHILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+      +   F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECCAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
              P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGVLLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q      
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ------ 731

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K  ++V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHEKLLAMVFKKENER 784


>gi|312887198|ref|ZP_07746802.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311300510|gb|EFQ77575.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 927

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 344/974 (35%), Positives = 522/974 (53%), Gaps = 138/974 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF   GH ++PS+ ++  NDPTLMFTN+GM  FK+IF G+E   +  V   Q+
Sbjct: 6   IRQAFLDFFASKGHTIVPSAPIVVKNDPTLMFTNAGMNQFKSIFLGEEPVKFPRVADTQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG  + HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + LD+ RLY
Sbjct: 66  CLRVSGKHNDLEEVGIDSYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEIYKLDKSRLY 125

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ DE        E  +LW++   ++ D I+     DNFW M ETGPCGPCSEI +D
Sbjct: 126 VTYFEGDEKEGLAADTETLELWREF--VADDHILPGNKKDNFWEMGETGPCGPCSEIHYD 183

Query: 179 ----------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
                      G  +  G+  S       +EIWN VFMQF +        LP   +DTGM
Sbjct: 184 GRTDAERAQIDGATLVNGVDDS------VMEIWNDVFMQFNRLKDGSLQPLPAKHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNI---------- 269
           G ER+  ++Q KT+NYD D+F+ LIQ   + +G+ Y         EG+++          
Sbjct: 238 GFERLVRIMQGKTSNYDTDVFQPLIQFIAEKSGIVYGPHPALSKGEGSDLQASEAHALKV 297

Query: 270 -------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLL 315
                        V  RV+ DH+R+ SF IADG LP+N   GYV+RRI+RRA+ Y+ + L
Sbjct: 298 LSFGEDLVEAKTDVAMRVMADHIRAISFAIADGQLPSNNKAGYVIRRILRRAVRYSYQYL 357

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD----- 370
            + EP +  L+P L  +    + EL+  K  +++ +  E+  F +TLDRG+   +     
Sbjct: 358 NFKEPFLNQLVPILAQQFVGVFTELVNQKDFVQKVVLEEEVAFLRTLDRGINKFEEFIQK 417

Query: 371 -----GVLSHLGKDE--------------ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
                 ++ +L  D               I+ G+ AF+L DT+G PLD+ +  L AR + 
Sbjct: 418 EAQEIELIKNLANDSSSSLPTAFKDSKTTIIRGNFAFELSDTYGFPLDLTE--LMAREIG 475

Query: 412 -GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  +  AL +Q+SR+RA +  + +G     W  LKE     +F+GY        + 
Sbjct: 476 WTVDVEGYETALAQQKSRSRA-ATAIDTGD----WILLKED-DTVEFVGYTETETIAHVV 529

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           + RKV                            +A   ++ ++V D+TPFYAE+GGQ+GD
Sbjct: 530 KYRKV----------------------------KAKGKEQYQIVLDKTPFYAESGGQVGD 561

Query: 531 TGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           TG  I  DG  + +TD  KK  G+ VH   V++     + +L   +D   R+  + NHSA
Sbjct: 562 TGELIFPDGEIVPVTDT-KKENGLIVH--FVDQLPEDIDDALTAMVDVDKRKATNNNHSA 618

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LGSHV+Q GS +  + LRFD +H   +T  E+  IE  VN+ I +N+ V
Sbjct: 619 THLLHAALKEVLGSHVNQKGSLVNNEYLRFDFSHFSKVTDEEIARIEAIVNERIRENILV 678

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + + +E+AIA GA AL G KY D VRVV+++ +     S  LCGGTHV STG+I    
Sbjct: 679 DIQELPKEEAIAMGANALFGEKYGDTVRVVTMDMK----FSIELCGGTHVQSTGQIGFFK 734

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++ES++ AG+RRIEAITG     +   Q + ++ L   LK +  NV   VE + +E  +
Sbjct: 735 IIAESAVAAGVRRIEAITGVAVEQYFNEQGKLIQQLKELLK-NPKNVAKSVEGLLDENSR 793

Query: 770 LQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+      ++ K      V       I  +NF++  +   ++  +K++  +L K I   +
Sbjct: 794 LKKELEKSVYEKAAGLKQVLAAKAEAINGINFIAQQVDLPNADAIKNLAYSL-KDIVPNL 852

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++    + K ++ +++ E L+     NA ++ R  AK +  GGGGG+P  A +GG + 
Sbjct: 853 FLVLTAQIDGKPNITVMIEESLVKEKGLNAGNIIRELAKEV-QGGGGGQPFYATAGGKDV 911

Query: 883 NKADQAIAGVASFL 896
           +   + +    SF+
Sbjct: 912 SGLPRVLDKARSFI 925


>gi|317014630|gb|ADU82066.1| alanyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 847

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 336/892 (37%), Positives = 498/892 (55%), Gaps = 69/892 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +S D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VSVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L+    ++TG+ Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMAEISELTGLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y   +F+GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECSAKVLGFFDSDFKEMT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDKGALLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 DEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERFEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A + GA AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + 
Sbjct: 625 QAKSRGALALFSEKYAENVRVVSFKEA-----SIELCGGVHVENTGLIGGFRILKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        + ++LK+    LK    +V+  + ++ E  +  Q    K 
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKILLK--NNDVIAGINKLKESVKNSQ----KA 733

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            + +   DL   KI  V+ +  ++ + D KE+   +D L+ K +  + M+    KE +  
Sbjct: 734 PVSM---DLPVEKIHGVSLVVGVVEQGDIKEM---IDRLKNKHERLLAMV--FKKENERI 785

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            L    ++   + NA   A   A++L GG GGGR   A +GG +  K   A+
Sbjct: 786 NLACGVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834


>gi|238926823|ref|ZP_04658583.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885355|gb|EEQ48993.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 890

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 340/901 (37%), Positives = 516/901 (57%), Gaps = 65/901 (7%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +R  +L FF +K GH  LPS SL+P NDPTL+   +GM P K  FTG+ KP    + T Q
Sbjct: 24  LREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHRIVTCQ 83

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           +CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L + +L
Sbjct: 84  RCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKEKL 139

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++T+Y  D+EA ++W +  GLS D I+ +   DNFW +   GPCGP SEI+ D G     
Sbjct: 140 WVTIYPNDDEARQIWLEQPGLSLDHIVPL--EDNFWEIG-PGPCGPDSEIYIDLGAERGC 196

Query: 186 GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           G P  S   + +R++EIWNLVF Q+++    E  +L   +IDTG GLER+A+V+Q K  N
Sbjct: 197 GSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQNKKTN 256

Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ DL   +I+ +  V+  +Y  +    ++ +VI DH RS   +I DGILP+NEGRGYVL
Sbjct: 257 FETDLLYPVIEYAVNVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEGRGYVL 316

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDERFG 359
           RR +RRA+ + R+LG T+P +   + A+    G    + EL+  +  I+  +R E+ERF 
Sbjct: 317 RRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIKRVIRIEEERFA 376

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL +G+ LL+  +  L  +  +IL G+V FKLYDT+G P ++ ++IL   GL  +D   
Sbjct: 377 ATLVQGIDLLNEEIDSLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK-LDDAG 435

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q +E+QR+RAR       S   E    ++ +  G                  D   L 
Sbjct: 436 FAQEMEKQRNRAR-------SARAENQAVAVPDLSGL-----------------DTSALT 471

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +           + V AI + G +V+    G+   ++   TPF+AE GGQ+GD G  + D
Sbjct: 472 EN-----AEARKAEVVAIWRDGALVDMLHDGESAGIILSTTPFHAEGGGQVGDAGLLLSD 526

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R+ I + ++  +G   H A VE G ++   ++ + +D  ++   + NH+ATHLL  AL
Sbjct: 527 VGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHLLQAAL 586

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+G HV Q GS +TP+ LRFD T+ +P+T  +++ IED VN+ +  ++ +    M   
Sbjct: 587 QRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEVLSSIDLDISTMPIA 646

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL G KY D VRVV V        S  LCGG+HVS+TG+I L  I+ ES + 
Sbjct: 647 VAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIGESGVA 701

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIH 774
           AG+RRIEAITG+ A  ++   D  +++L+  LKV  G+++ +V+++ +E + +Q    + 
Sbjct: 702 AGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLLTQVDKLIDEKKNMQEQLRVF 761

Query: 775 AKRKLQLNVEDLSCHKIADVNFMS--HII---SEVDS-KELKSVMDALQKKIQSGIIMLV 828
           A  + Q + + L    ++DV  +   H+I     VDS +EL+++ D   +K+ +GI++L 
Sbjct: 762 ADSRDQADAQKL----LSDVQEIGKFHVIVGKVNVDSMEELRNIADLTCEKLSAGIVVL- 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++   K ++++   +D +           +A    GGGGGGRP MAQ+GG       QA
Sbjct: 817 GMAANDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGGGGRPDMAQAGGKMPQNLPQA 876

Query: 889 I 889
            
Sbjct: 877 F 877


>gi|329121068|ref|ZP_08249699.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327471230|gb|EGF16684.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 885

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 315/897 (35%), Positives = 500/897 (55%), Gaps = 55/897 (6%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    +TT
Sbjct: 20  NDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHRITT 79

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   +D+ 
Sbjct: 80  SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKMDKE 135

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T++ +D++A+  W K  G++ + I R+   DNFW + E GPCGP SEIFFDQGE  
Sbjct: 136 RLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQGESF 192

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            G  P +    +G+R++EIWNLVF QF++Q       L K +IDTG GLER+A V+Q+K 
Sbjct: 193 -GTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLAKKNIDTGAGLERLAAVMQQKK 251

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NN++ DLF  +I  + +++G  Y  + ++ V  +VI DH R+ + +I+DG+LP+NEGRGY
Sbjct: 252 NNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGRGY 311

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + +L+G  +  M  ++  +   M   YPEL + +  I++    E+ERF 
Sbjct: 312 VLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEERFQ 371

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+ G  LL  ++    K  I  L+G+  FKLYDT+G P ++  +I    G++ ID   
Sbjct: 372 STLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDKEG 430

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++ +Q+ RAR   + +                             +K +  D   L 
Sbjct: 431 FIISMNKQKERARNARVKI----------------------------SAKVLTPDTTKLD 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
            K        V + +  + + GE +  A  G+ + V+    PF+AE GGQ+GD G     
Sbjct: 463 AKNLTVKDEDVDTTIVMLGKNGEEILSATDGEDLVVILKNNPFHAEGGGQMGDIGILRNS 522

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ + +K  +GI      +  G +     + + +D   R  L+ NH+ THLLH AL
Sbjct: 523 SGVFEVHNTKKLPDGIVYLIGTITEGKISVNDIVEVKVDRVRRAALAKNHTGTHLLHAAL 582

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG   +Q GS + PD LRFD T ++P+T+ ++  +E  VN+ I ++L + T+ +  E
Sbjct: 583 RQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILESLTLTTKEVPLE 642

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY   VR+V +     G  S  LCGG+H  +TGE+    I+SES I 
Sbjct: 643 EARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESGIG 697

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQL 772
           +G+RRI A+TG  A   ++   + +++ A  LK  +  ++ +++++  + +K     L+L
Sbjct: 698 SGLRRIVALTGISAYKAMVSDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDILKL 757

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            + + K +L+           ++F +      +  EL+ + D ++ K+  G  +L  +S 
Sbjct: 758 KNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSVSN 817

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            K   V +   E +    +   +    AK+   GGGGG+P +AQ+GG + +K + AI
Sbjct: 818 GKVNFVGMASKEAVEAGIHMGKVVSQVAKIC-NGGGGGKPTVAQAGGKDISKVEDAI 873


>gi|317011441|gb|ADU85188.1| alanyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 847

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 335/892 (37%), Positives = 491/892 (55%), Gaps = 69/892 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FF+ NGH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFKNNGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +I+V+++D+EA KLW+K   + AD+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 HISVHEKDDEAVKLWEKF--VPADRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++TG+ Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMKEISELTGLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKDMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL  ++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNIFVGYETTECSSQALGFFDSDFKEMT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 ETNP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAALVLDTKNFFGLNFSLLQIKKTLKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +HSK +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRILKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+    LK    +V+  + ++ E  R  Q   A  
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNARILLK--NNDVIAGINKLKESVRNSQKTPAPM 737

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            L           I  +N  S ++  V+  ++K ++D L+ K +  + M+     E+ A 
Sbjct: 738 DL----------PIETINGTSVVVGVVEQGDVKEMIDRLKNKHEKLLAMVFKQENERIAL 787

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              V    +     A   A   A++L GG GGGR   A +GG +  K   A+
Sbjct: 788 ACGVKNAPI----KAHAWANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAAL 834


>gi|291557844|emb|CBL34961.1| alanyl-tRNA synthetase [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 336/912 (36%), Positives = 509/912 (55%), Gaps = 57/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P    V
Sbjct: 4   TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  ++ 
Sbjct: 64  TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED EA  +W    G+  D+II++   DNFW    +GPCGPCSEI FD+GE
Sbjct: 120 EDRLWVTIYEEDNEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFDRGE 178

Query: 182 CIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
              G      + GE  R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+Q+
Sbjct: 179 KY-GPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQD 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  +++++    V G+ Y  +    V+ RVI DH+RS++F++ DGI P+NEGR
Sbjct: 238 VDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG   P +  +   +  E  +AYPEL + +  I++ +++E+E 
Sbjct: 298 GYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEES 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           F KT+D+G+ +L   +  L  D+    IL+G+  FKL+DT+G P+D+ ++IL  + + GI
Sbjct: 358 FAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKNI-GI 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + + EQ+++AR++    G G  E    +L      T F+GY      K +  D 
Sbjct: 417 DEERFFELMNEQKAKARSNQAFKG-GWDEATANALSGL--TTTFVGY------KSLTADS 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K+L                 A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KIL-----------------AMIKDGEVTDVCNEGDEVTVVLDVTPFYAESGGQVGDCGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  HLL
Sbjct: 511 ITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLL 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT  
Sbjct: 571 QAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILSGIPVVTEE 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+SE
Sbjct: 631 LPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKIISE 685

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NVVGRVEEIWE 765
           +S+ +G+RRIEA+TG    S        + ++A  LK++          N++  +  +  
Sbjct: 686 TSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHAMQA 745

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           E  +L  I +  +++ NV D    ++  +   S ++S V    L+   D L+    S I 
Sbjct: 746 EIDRLNGIISMSQMK-NVTD-GATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+S  K   + I   E +    NA  + +  A +  GG GGG+P  A +G  +  K 
Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKKIAAIA-GGKGGGKPDTAMAGIADVTKI 862

Query: 886 DQAIAGVASFLK 897
           D+A+  +   +K
Sbjct: 863 DEALLALTDIVK 874


>gi|256847960|ref|ZP_05553404.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715020|gb|EEU29997.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 883

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 336/927 (36%), Positives = 516/927 (55%), Gaps = 82/927 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF ++GH+ +PS SL+P +DPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLDFFIQHGHKEMPSRSLVPVDDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+  I  AW+LLT +  F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKKEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+T Y +D +A+  W+  +G+  + +I+    DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPEKLYVTYYPKDHDAYNYWRA-AGVPENHLIQ--NKDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           + +       P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEMNNVAEDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E  +  K  G N    V  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQTETFSQNKQYGQNAADDVQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNMGRGYVIRRLLRRAVVTGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           ++SE+ERF  TL+ GL LL+ V+      G +EI +G  AFKLYDT+G P+++ ++    
Sbjct: 358 IKSEEERFSTTLNGGLNLLNNVIDDAKQNGTNEI-DGKTAFKLYDTYGFPIELTKEYASD 416

Query: 408 RGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            GL  +D   F  A+ EQ++RAR A  +  G G    +W    E    ++++GY  L   
Sbjct: 417 EGLT-VDQSGFEAAMTEQQNRARNARDIDNGMGVQTDVWTDFTE---PSKYVGYHQLS-- 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQKVEVVFDQTPFYAEAG 525
               E+ K++                  +   G+ V+EA      +EV+FD TPFYAE G
Sbjct: 471 ---VENAKII-----------------GLTADGQHVQEADPQADDIEVIFDVTPFYAEMG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR----- 580
           GQ+ DTG  I D    Q+  V      + V HA  ++ + R +++  + +  + R     
Sbjct: 511 GQVADTGDII-DNYGHQVGRV------VDVQHAPHQQNLHRVKLTAPIKLGAKYRLVVDR 563

Query: 581 -RQLSI--NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            R L I  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK++E 
Sbjct: 564 IRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKAVEK 623

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VND I + +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG 
Sbjct: 624 MVNDQIWKEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGD 678

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T E+ L  IVSE+ + AGIRRIEA+TG  A   +  + + L ++A+ LKVSQ   V
Sbjct: 679 HVQNTNELGLFKIVSEAGVGAGIRRIEAVTGSDAFKFMQERTDLLDTVANELKVSQEKEV 738

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKS 811
             RV+E+  + + L+  +A  + ++  +  S     + D      I +E++     +L+ 
Sbjct: 739 PHRVQELQTQLKDLEKDNANLQAKIAAQQASQVFDDVQDTKQGRLIAAELNVAGMGQLRQ 798

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           + D  + K QS  ++L   + + KA++L+ V++    +  A DL +  A  +  GGGGGR
Sbjct: 799 LADQWRAKGQSDFLVLATANGD-KANLLVAVSDTKAKKVKAGDLIKAIAPAI-NGGGGGR 856

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P +AQ+GG N     QA+     +L +
Sbjct: 857 PTLAQAGGKNPAGIKQALQQANDYLNQ 883


>gi|312132175|ref|YP_003999515.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311908721|gb|ADQ19162.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 887

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 345/930 (37%), Positives = 513/930 (55%), Gaps = 90/930 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+K GH ++PS+ L+  NDPTLMF NSGM  FK+ F G   P  + +   QK
Sbjct: 6   IRKAFLDFFEKRGHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGNPPSKRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ A+  +W+LLT+ + L + R+Y
Sbjct: 66  CLRVSGKHNDLEEVGFDTYHHTMFEMLGNWSFGDYFKKEALAWSWELLTEVYKLPKDRIY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF- 177
           ++V++         D+EAF +WK I G   ++II     DNFW M + GPCGPCSEI   
Sbjct: 126 VSVFEGNPSEGVPFDQEAFDIWKSIIG-DENRIILGNKKDNFWEMGDIGPCGPCSEIHID 184

Query: 178 --DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
             DQ E     G    +++  + +EIWN VFMQ+E++       LP+  +DTGMG ER+ 
Sbjct: 185 LRDQEEVDQISGKELVNKDHPQVVEIWNNVFMQYERKADGTLIPLPEKHVDTGMGFERLC 244

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------VNHRVIVDHLRSSSFLI 286
             +Q K +NYD DLF++ IQ  EQ++G KY  N          V  RVI DHLR+ SF I
Sbjct: 245 MAIQGKKSNYDTDLFQNTIQVIEQLSGFKYGVNGTLSSDNYVDVAMRVIADHLRAVSFAI 304

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG LP+N   GYV+RRI+RRA+ Y    L + EP M  L+P L  +    +PEL     
Sbjct: 305 SDGQLPSNAKAGYVIRRILRRALRYGYSYLNFREPFMCKLVPVLAKQFADVFPELQAQVD 364

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            + + +  E++ F +TL++GL  LD +      +++L+G+  F+L DT G P+D+   I 
Sbjct: 365 FVSKVVEEEEKTFLRTLEQGLKRLDVLFKEDKGEKLLSGETVFELSDTFGFPVDLTALIA 424

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G  GID   + +ALEEQ++R+R  +    +      W  L +   A +F+GYD L  
Sbjct: 425 REKGF-GIDEEGYKKALEEQKARSRKDAQKEAAD-----WVELGDT-DAVEFLGYDQLSS 477

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  + + R                            + +   GQ++ VV DQTPFYAE G
Sbjct: 478 TALLTKYR----------------------------ISKTKQGQEIHVVLDQTPFYAEMG 509

Query: 526 GQLGDTGC-AIGDGIRLQITDVQKKAEGIFVH-----HAIVERGILRTEMSLVLTIDYQN 579
           GQ+GDTG   IGD   L ++D +K+ + +F+H     +A          + +   ++ + 
Sbjct: 510 GQVGDTGTITIGDQT-LHVSDTRKEND-LFIHVVKDKNAAEILSGYEEPVEVFAQVNAER 567

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHL+  AL  +LGSH+ Q GS    +  RFD +H   +T  ELK +ED V
Sbjct: 568 RKNIEKNHTATHLMLAALKEVLGSHIVQRGSYQNDELTRFDFSHFAKVTDEELKKVEDIV 627

Query: 640 NDIIAQN-LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N+ I  N L    R +  ++A+  GA A  G KY D VRV++ +      +S  LCGGTH
Sbjct: 628 NEKIRANILKGEKRNVPFQEAVDMGATATFGEKYGDFVRVITFDPN----YSIELCGGTH 683

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STGEI L   +SE S+ AG+RR+EA+TG +A   +  Q + ++ L   LK +  +++ 
Sbjct: 684 VNSTGEIGLFRFISEGSVSAGVRRVEAVTGVKALELMREQAQLIQELKDLLKAT--DLLK 741

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------DVNFMSHIISEVD---SKEL 809
            VE +  E  + Q    KR        +   K+A      +VN M+ + + V+   +  L
Sbjct: 742 AVETLKAENAQFQ----KRIEMFENASIQAAKVALLSKVENVNGMNVVAARVNVPHADGL 797

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867
           K++   L++ I   +++L G     K S+ I++ E+++     NA  + R  AK++  GG
Sbjct: 798 KTLAFGLKQGIGKPVVIL-GAVINDKPSLAILIDENVVKEKNLNAGTIIREVAKLM-KGG 855

Query: 868 GGGRPHMAQSGGPNGNKADQAI-AGVASFL 896
           GGG+PH A +GG +    D AI A  AS L
Sbjct: 856 GGGQPHFATAGGSDVKGLDDAIEAAKASIL 885


>gi|145594371|ref|YP_001158668.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|205830200|sp|A4X5Z0|SYA_SALTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145303708|gb|ABP54290.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 892

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 334/911 (36%), Positives = 499/911 (54%), Gaps = 74/911 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L  F+ NGH ++PS+ L   +DP L+F  +GM+ F   F GQ+   Y+   
Sbjct: 2   KTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119
           +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAW+L TK  D   
Sbjct: 62  SVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWELSTKPVDAGG 117

Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             LD  R++ TVY +D+EAF++W+ + G+ AD+I+R    DNFWSM   GPCGPCSE+F+
Sbjct: 118 LGLDPDRIWPTVYLDDDEAFQIWRSV-GVPADRIVRRGKADNFWSMGIPGPCGPCSELFY 176

Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGL 230
           D+G     G  G  E  E RY+E WNLVFMQFE+     K++  IL   P  +IDTGMGL
Sbjct: 177 DRGPEY--GREGGPEVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + ++  + ++TG +Y  +          + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILAKAAELTGKRYGAHSGQVASESHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG++P+NEGRGYVLRRIMRRA+   RLLG+ E  M  LLP     M ++YPEL
Sbjct: 295 TALMLIGDGVIPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSASYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
                 I +   +E++ F  TL  G  +LD  +  +       ++G  AF+L+DT+G P+
Sbjct: 355 ATDFGRIADYAYAEEDAFLSTLRAGTTILDTAIAETRTAGRRAISGAKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QR+RA+A +    +G  +   + ++ ++ G   F
Sbjct: 415 DLTLEIASEQGLQ-VDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY      +  +E                  S V+A++        AV G+ VE+V D 
Sbjct: 474 TGY-----QEVSRE------------------STVRAVLGAASPHAAAVEGETVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRVGETGFAEIDT 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L+ +E 
Sbjct: 571 DRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ +  +L V   + +  +A   GA AL G KY ++VRVV V     G ++  LCGGT
Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V 
Sbjct: 686 HVGRSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
            RVE+   + R  +    K + QL          + ++V  ++++ +E       + +  
Sbjct: 746 ERVEQTVTQLRDAEKELEKLRAQLVLGGAAALAAQASEVRGVAYVGTEAPEGAAGNDVRT 805

Query: 816 LQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           L ++I+S I      ++ V      KAS+++ V      +  +A DL     KV   G G
Sbjct: 806 LAQEIRSRIDPARPAVVAVAARANGKASLVVAVNPAARSQGLSAADL----VKVAFAGRG 861

Query: 869 GGRPHMAQSGG 879
           GG P +AQ GG
Sbjct: 862 GGSPELAQGGG 872


>gi|167749584|ref|ZP_02421711.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702]
 gi|167657438|gb|EDS01568.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 333/912 (36%), Positives = 508/912 (55%), Gaps = 57/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P    V
Sbjct: 4   TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  ++ 
Sbjct: 64  TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EA  +W    G+  D+II++   DNFW    +GPCGPCSEI FD+GE
Sbjct: 120 EDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFDRGE 178

Query: 182 CIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
              G      + GE  R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+Q+
Sbjct: 179 KY-GPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQD 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  +++++    V G+ Y  +    V+ RVI DH+RS++F++ DGI P+NEGR
Sbjct: 238 VDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG   P +  +   +  E  +AYPEL + +  I++ +++E+E 
Sbjct: 298 GYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEES 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           F KT+D+G+ +L   +  L  D+    IL+G+  FKL+DT+G P+D+ ++IL  + + GI
Sbjct: 358 FAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKNI-GI 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + + EQ+++AR++    G G  E    +L      T F+GY      K +  D 
Sbjct: 417 DEERFFELMNEQKAKARSNQAFKG-GWDEATANALSGL--TTTFVGY------KSLTADS 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K+L                 A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KIL-----------------AMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDCGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  HLL
Sbjct: 511 ITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLL 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT  
Sbjct: 571 QAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVTEE 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+SE
Sbjct: 631 LPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKIISE 685

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NVVGRVEEIWE 765
           +S+ +G+RRIEA+TG    S        + ++A  LK++          N++  +  +  
Sbjct: 686 TSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPTAVMQKCENMMNEMHAMQA 745

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           E  +L  I +  +++   E  +  ++  +   S ++S V    L+   D L+    S I 
Sbjct: 746 EIDRLNGIISMSQMKNVTEGAT--EVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+S  K   + I   E +    NA  + +     + GG GGG+P  A +G  +  K 
Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVK-EIAAIAGGKGGGKPDTAMAGIADVTKI 862

Query: 886 DQAIAGVASFLK 897
           D+A+  +   +K
Sbjct: 863 DEALLALTDIVK 874


>gi|259502864|ref|ZP_05745766.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169231|gb|EEW53726.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 886

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 332/929 (35%), Positives = 514/929 (55%), Gaps = 98/929 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FFQ++GH+++PS SL+P NDPTL++ NSG+   K  F G+  P    +T+ 
Sbjct: 10  AQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMTSS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+  I  AW+LLT +  F  D 
Sbjct: 70  QKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKDEVIPWAWELLTSDDWFGFDP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +E+F+D+G  
Sbjct: 126 ARLYITYYPKDHDAYNKWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEVFYDRGQE 181

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 182 FNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  +I Q +    G +Y  N    V  ++I DH+R+ +F I DG LP
Sbjct: 240 IFENAPTNFETDLFMPIIKQVAALSAGKEYGANKADDVQFKIIADHIRTITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  L+P +   M   YPE++Q    I   ++
Sbjct: 300 SNMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           SE++RF  TL+ GL LL+ V++     G ++I +G  AFKLYDT+G P+++ ++     G
Sbjct: 360 SEEDRFSATLNGGLNLLNSVIADAKQNGSNQI-DGRTAFKLYDTYGFPIELTKEYAADEG 418

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L  +D   F  A+ EQ++RAR A  +  G G    +W   KE    ++++GY     +  
Sbjct: 419 LT-VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGY-----TDL 469

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQ 527
           + +D KV+                  +   G+  + A    Q +EV+FD+TPFYAE GGQ
Sbjct: 470 VVDDAKVI-----------------GLAHDGQQADSAAPDDQNIEVIFDKTPFYAEMGGQ 512

Query: 528 LGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTIDY 577
           + DTG  I + G ++ ++ DVQ         HA  ++ + R E++          L +D 
Sbjct: 513 VADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPLKKGARYKLVVDR 563

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
               ++  NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +L ++E 
Sbjct: 564 ARHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEA 623

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG 
Sbjct: 624 MVNEQIFKEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGD 678

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ---- 753
           HV +T E+ L  IVSE  + AG+RRIEA+T   A   L  ++  L+ +A  LK +Q    
Sbjct: 679 HVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAYDFLQQRNAMLEEVAGDLKAAQIKEV 738

Query: 754 -GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---EL 809
              V    EE+ +  ++++ + AK   Q    +    ++      + I +EV      +L
Sbjct: 739 PHQVANLQEELKQANKQVEALQAKIAAQQ--ANSVFDEVQTTKGGTLIAAEVKVAGMGQL 796

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           + + D  + K  S +++L G + + KA++L+ V+++ +     A DL +  A  +  GGG
Sbjct: 797 RQLADRWRAKGLSDVLVL-GTANDGKANLLVAVSDEKVKAGLKAGDLIKAIASAI-KGGG 854

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G RP++AQ+GG +        AG+ + LK
Sbjct: 855 GSRPNLAQAGGKDP-------AGIPAALK 876


>gi|253570246|ref|ZP_04847655.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251840627|gb|EES68709.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 872

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 346/927 (37%), Positives = 507/927 (54%), Gaps = 96/927 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFETKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELI 341
            DG LP+N   GYV+RRI+RRA+ Y    GYT     +  M  LLP L   MG AYPELI
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRY----GYTFLEQKQSFMYKLLPVLIDNMGDAYPELI 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPL 398
             K LIE+ ++ E+E F +TL+ G+ LLD   G     GK EI +G  AF LYDT G PL
Sbjct: 355 AQKGLIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEI-SGKDAFTLYDTFGFPL 413

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + IL   G+  ++I  FN  +++Q+ RAR ++  + +G     W +L+E  G T+F+
Sbjct: 414 DLTELILRENGMT-VNIEEFNTEMQQQKQRAR-NAAAIETGD----WVTLRE--GTTEFV 465

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFD 516
           GY                      D T   +SI+  + I Q+ + +         ++V D
Sbjct: 466 GY----------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLD 495

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFYAE+GGQ+GDTG  + +   +++ D  KK   + +H  I ++     E  ++  +D
Sbjct: 496 CTPFYAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVD 552

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R   + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E
Sbjct: 553 TDKRAACAANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVE 612

Query: 637 DNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
             VN  I  N+P+   R +  E+A   GA AL G KY +RVRV+          S   CG
Sbjct: 613 HLVNAKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFG------SSIEFCG 666

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG- 754
           G HV++TG I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +   
Sbjct: 667 GIHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAPDL 726

Query: 755 --NVVGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
              +   +EE        E+Y K +    K +L  N++++  H I  + F + + +EV  
Sbjct: 727 GIAIRKYIEENAGLKKQVEDYMKEKEASLKERLLKNIQEI--HGIKVIKFCAPLPAEV-- 782

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865
             +K++   L+ +I   +  + G     K  + ++++++L+     A +L + +AK++  
Sbjct: 783 --VKNIAFQLRGEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+PH A +GG N +  + AI  V
Sbjct: 840 GGGGGQPHFATAGGKNTDGLNAAIEKV 866


>gi|315653055|ref|ZP_07905983.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|315489590|gb|EFU79224.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 906

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 348/918 (37%), Positives = 523/918 (56%), Gaps = 73/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 36  SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 95

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 96  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 151

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 152 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 208

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 209 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 266

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 267 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 326

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 327 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 386

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 387 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 446

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  ++ Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 447 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 495

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 496 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 538

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 539 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 597

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 598 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 657

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 658 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 712

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 713 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 772

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 773 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 831 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 888

Query: 879 GPNGNKADQAIAGVASFL 896
           G N     QA+  V + L
Sbjct: 889 GKNPAGLAQALETVLNEL 906


>gi|302541105|ref|ZP_07293447.1| alanine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458723|gb|EFL21816.1| alanine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 828

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 317/809 (39%), Positives = 462/809 (57%), Gaps = 63/809 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ +P Y+ 
Sbjct: 1   MMESAEIRRRWLRFFEERGHTVVPSASLI-ADDPTLLLVNAGMVPFKPFFLGEVQPPYKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
             +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT     
Sbjct: 60  AVSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTGSVAD 115

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + LD  RL+ITVY++D+EA ++W+ + G+ A++I R+    N+WSM   GPCGPCSEI
Sbjct: 116 GGYGLDPERLWITVYEQDDEAERIWRDVVGVPAERIQRLGMGPNYWSMGVPGPCGPCSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMG 229
            +D+G    G   G +   ERY+EIWNLVFMQ+E+     +E F     LP  +IDTG+G
Sbjct: 176 NYDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGPGEGKENFPILGELPSKNIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ D  + ++  + ++TG+ Y    ++ V+ RV+ DH+R+S  LI 
Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVAYGSSHDSDVSLRVVADHMRTSVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRRIMRRA+   R+LG  EP++  L+  +   MG  YPEL+  +  I
Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRILGAAEPVVGELVDVVLKTMGQQYPELLTDRKRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++ 
Sbjct: 355 ETVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLPGDKAFLLHDTWGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL+ +D   F + + EQR RA+A +    +G  +   +  + +  G+T+F GY    
Sbjct: 415 AEQGLS-VDEDGFRRLMREQRERAKADAKAKKTGHADLSAYREVADTSGSTEFTGYSD-- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T+G S++V  +V  G     A  G +VEVV D+TPFYAE 
Sbjct: 472 --------------------TSGESTVVGLLVD-GVSSPAASEGDEVEVVLDRTPFYAEG 510

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL DTG   +  G  +++ DVQ+   G+ VH  +V+ G +         ID + RR +
Sbjct: 511 GGQLADTGKIKLASGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGSGAYAEIDVRRRRAI 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++
Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPSAVPGGVLTDVEQKINEVL 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ L V   +M+ +DA   GA A  G KY DRVRVV++     G  S  LCGGTHV +T 
Sbjct: 631 SRELDVTAEVMSMDDAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTA 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K       GR EE+
Sbjct: 686 QLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVK-------GRPEEL 738

Query: 764 WEEYRKLQLIHAK-RKLQLNVEDLSCHKI 791
            E   K+  + AK R  +  +E     K+
Sbjct: 739 PE---KISGMLAKLRDAEKEIERFRAEKV 764


>gi|291460300|ref|ZP_06599690.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417055|gb|EFE90774.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 882

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 339/899 (37%), Positives = 508/899 (56%), Gaps = 48/899 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF++  H  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRMFLEFFEEKQHLRMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFKE AI  AW+ LT+   +   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKEEAIHWAWEFLTERVGIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++WK+  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFRIWKEEIGIAPERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180

Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              P  + G   EG+R++E+WN+VF QF          L   +IDTGMGLER+A V Q+ 
Sbjct: 181 GTGPEDVMGG--EGDRFMEVWNIVFSQFNNDGHGVYTELEHKNIDTGMGLERLAVVCQDV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +D+D  + +++    +   +YE +    V+ R+I DH++S +F+ +DGILP+NEGRG
Sbjct: 239 LSLFDVDTNRAMMEEIGALAHCRYEEDPEKDVSFRIIADHVKSCTFMASDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV RR++RRA  + ++LG     M  L   +       YPEL + + +I   +  E+ERF
Sbjct: 299 YVFRRLLRRAARHGKILGLKGRFMAALSQKVIELSKDGYPELEEKREMILRVIEQEEERF 358

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             T+D+GL +L  +   + K  +++L+G+ AF+LYDT G P D+ ++IL  +G + ID  
Sbjct: 359 QNTIDKGLEILSELQEEMKKRGEKVLSGEDAFRLYDTFGFPPDLTREILSDKGQS-IDEE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKV 475
            F +A+  QR  ARA          + I+  L  K   T+F GY  L   SK        
Sbjct: 418 GFQKAMRLQRETARAARKSTNYMGRDDIYQRLDPKL-RTEFTGYHSLTERSK-------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQG--EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       ++++V+   + G  EIV+    G++  V+ ++TPFYA  GGQ+GDTG 
Sbjct: 469 ------------ITALVRLAPEDGEDEIVDVLTDGERGAVLTERTPFYATMGGQVGDTGS 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +G      + +      G       +  G+L+      L +D   R + + NH+ATHLL
Sbjct: 517 ILGGEGDFTVEETIHLQGGKIAEIGTMRSGMLKAGEEAELRVDPIRRERTARNHTATHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q G+      LRFD TH + +T  E++ +E+ VN  I++  PV T  
Sbjct: 577 HEALREVLGNHVEQAGAYYDDKRLRFDFTHFEALTEEEIRKVEEIVNREISKLTPVKTEE 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  SGA AL G KY DRVRVVSV     G  S  LCGGTHV++T EI  L I+SE
Sbjct: 637 MSLEDAKKSGAVALFGEKYGDRVRVVSV-----GDFSKELCGGTHVANTAEIQGLKILSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I +G+RRIEA+T +   ++   ++E L+  A  LK    ++  R+  + +E +  +  
Sbjct: 692 QGIASGVRRIEALTSENLMAYFSEEEELLREAAKLLKTEPKHLSERILALEKELKDSRAE 751

Query: 774 HAKRKLQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
               + +L  E   +LS  +I+ V+F++  +   D   L+ + D L+++     I+L   
Sbjct: 752 AESLRAKLAKESMGELSVEEISGVSFLAKALEGADGNSLRELGDQLKERYPDAFIVLASD 811

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              K   +       +    +A  L R  A +L GGGGGGRP+MAQ+GG + ++  +A+
Sbjct: 812 KGGKPCLMATAADSAVKKGADAGALIRAVAPIL-GGGGGGRPNMAQAGGKDTSRIPEAL 869


>gi|205830258|sp|A4SGJ6|SYA_PROVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 885

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 326/871 (37%), Positives = 486/871 (55%), Gaps = 79/871 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y      
Sbjct: 4   SDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRAADT 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT  + L + R
Sbjct: 64  QKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLPEER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY TVY +D+E+F++W++ + +  D I+R    DNFW M ETGPCGPCSEI  D     P
Sbjct: 124 LYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHID---LTP 180

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G   +  + +  + IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K++
Sbjct: 181 DGSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKSS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NYD D+F+ L     ++TG++Y  +      +  RVI DH R+ SF ++DG +P+NEGRG
Sbjct: 241 NYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ YA+ LGY +P++  L+  +   MG  +PEL   +  +   +++E+E F
Sbjct: 301 YVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEESF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TLDRG+ + +G++  +  +    L G+ AFKLYDT+G P D+ + +  + GL  +D  
Sbjct: 361 LVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGLQ-VDGE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            F + ++EQ++RAR        G  E+    WFS      AT+F GYD L        D 
Sbjct: 420 GFERCMQEQKTRARQDRREKQRGGAEEGSWEWFS---DLHATEFTGYDGLEA------DA 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
            ++          G+S   K ++                +V D+TPFYAE+GGQ GD G 
Sbjct: 471 SII----------GISRSKKNLL----------------LVLDRTPFYAESGGQTGDRGW 504

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-------------LVLTIDYQNR 580
                 RL++TD QK  +  FVH  +V R       S             +  ++D + R
Sbjct: 505 IETGEYRLEVTDTQKDGDS-FVH--VVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLR 561

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +    NH+ATHLLH  L   LG+HV Q GS + P+ LRFD +H   +T  E+ ++E  VN
Sbjct: 562 QATERNHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVN 621

Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           D I Q    +    +  +DAI  GA A  G KY D VRVV +     G+ S  LCGGTHV
Sbjct: 622 DCIRQAEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIP----GI-SVELCGGTHV 676

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVG 758
            + G+I L  IV ESS+ AG+RRIEA+TG+ A   +  +  +L  +   LK+ ++     
Sbjct: 677 DNVGQIGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAE 736

Query: 759 RVEEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           +V  I EE R L+   A+ K     ++L  +  +   +     ++ ++   D++ L+   
Sbjct: 737 KVAAILEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAA 796

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+++      +L   S E K S+    ++
Sbjct: 797 QMLRQQFPLSAGLLCS-SAEGKVSLAAFASD 826


>gi|254383594|ref|ZP_04998944.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342489|gb|EDX23455.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 889

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 344/914 (37%), Positives = 509/914 (55%), Gaps = 84/914 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP     T+V
Sbjct: 4   AEIRRRWLSFFEERGHAVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGETKPPAPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY +D+EA  +W++  G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEPEKLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + +E F     LP  +IDTG+GLER+
Sbjct: 179 GPDF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290
           A +LQ   N Y+ D  + ++  + ++TG+ Y   +G + V+ RV+ DH+R+S  LI DG+
Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVLYGAAQGTD-VSMRVVADHIRTSVMLIGDGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPEL+  +  IE  
Sbjct: 297 TPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLVDVVINTMGQQYPELVTDRKRIETV 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             +E+  F K +  G  +LD  +S        +L+GD AF L+DT G P+D+  ++   +
Sbjct: 357 ALAEEAAFLKAVKGGTNILDTAVSETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSK 467
           GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY       
Sbjct: 417 GLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGYAT----- 470

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T G S+IV  +V  G     A  G +VEVV D+TPFYAE GGQ
Sbjct: 471 -----------------TQGESTIVGLLVN-GVSAPAASEGDEVEVVLDRTPFYAEGGGQ 512

Query: 528 LGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           L D G   +  G  + + DVQ+   G+ VH   V+ G +    S    ID   RR ++  
Sbjct: 513 LADQGRIKLDSGAVIVVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVSRRRAIARA 572

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +ND++++ 
Sbjct: 573 HSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLSRE 632

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++ 
Sbjct: 633 LDVTAEIMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQLG 687

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K       GR EE+ E+
Sbjct: 688 LVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEK 740

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKS 811
                ++   +  +  +E     K+            D+  ++ ++  V     + +L+ 
Sbjct: 741 I--ASMLGKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIRGVALVVGSVPDGTGADDLRK 798

Query: 812 VMDALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
           ++  ++ +IQ     ++ L   + ++  +V I   E   +R   A DL R +AK L GGG
Sbjct: 799 LVLDVRGRIQGDRPAVVALFTTANDRPLTV-IATNEAARERGLKAGDLVRTAAKTL-GGG 856

Query: 868 GGGRPHMAQSGGPN 881
           GGG+P +AQ GG N
Sbjct: 857 GGGKPDVAQGGGQN 870


>gi|312873707|ref|ZP_07733752.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|325911933|ref|ZP_08174336.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|311090705|gb|EFQ49104.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|325476235|gb|EGC79398.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 877

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 348/918 (37%), Positives = 523/918 (56%), Gaps = 73/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  ++ Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859

Query: 879 GPNGNKADQAIAGVASFL 896
           G N     QA+  V + L
Sbjct: 860 GKNPAGLAQALETVLNEL 877


>gi|291513841|emb|CBK63051.1| alanyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 873

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 314/799 (39%), Positives = 452/799 (56%), Gaps = 73/799 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++PS+ ++   DPTLMFTN+GM  FK+IF G     Y      
Sbjct: 4   NKIRQAFLDFFESKGHAIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRAADT 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHT FEMLGN+S+G YFK+ AI+ AW+LL   + L   R
Sbjct: 64  QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLHGVYGLPAER 123

Query: 125 LYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +Y TV++         D+EA+  W +   L AD IIR   +DNFW M ETGPCGPCSEI 
Sbjct: 124 MYATVFEGSEEDGVPFDQEAYDYWLRY--LPADHIIRGNKHDNFWEMGETGPCGPCSEIH 181

Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           FD + E      PG    +    + IEIWNLVFMQF ++       LP  ++DTGMG ER
Sbjct: 182 FDLRDEAEIAAKPGREMVNASHPQVIEIWNLVFMQFNRKANGSLEELPARNVDTGMGFER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +  +LQ K +NYD D+F+  I    +++G KY  +    V  RVI DHLR+ +F IADG 
Sbjct: 242 LCMILQGKKSNYDTDVFQPTIGRIAEMSGKKYGEDRKADVAMRVIADHLRAIAFSIADGQ 301

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N   GYV+RRI+RRA+ Y    LG+TEP +  L+P L  +MG  +PEL   + LIE+
Sbjct: 302 LPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTLCRLVPGLVGQMGGQFPELKAQQGLIEK 361

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +  E+  F +TL  G+ LLDGV+S    +  E+++G  AF+LYDT G P+D+ + I   
Sbjct: 362 VIEEEESSFLRTLATGINLLDGVISRTKGEGKELISGKDAFELYDTFGFPIDLTELIARE 421

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLR 464
           +G+ G+D+ +F + L+ Q+ R+R       +      W   F ++E    + F GYD L 
Sbjct: 422 QGV-GVDLAAFEKELQAQKERSRN-----AAAVDTDDWVELFPIRE----SVFTGYDTLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V         + G +S                     ++VFD+TPFY  +
Sbjct: 472 EKVRIARYRRV--------TSKGKTSY--------------------QLVFDRTPFYGNS 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G       R+ +   +K+  G+ +H  IV +            +D + R+  +
Sbjct: 504 GGQVGDIGMIESANERIPVVATEKE-NGLIIH--IVNQLPENPAAEFTARVDPEKRQAAA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+H AL  +LG+HV Q GS +TP+ LRFD +H + +T  EL+ +E  VN  I 
Sbjct: 561 NNHTATHLMHEALRKVLGAHVEQKGSLVTPEILRFDFSHFQKVTPEELRKVEQLVNRAIR 620

Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P+V  R   +E+A   GA  L G KY D+VR+V          S  LCGGTH  +TG
Sbjct: 621 ANYPLVENREATKEEAEKCGAMMLFGEKYGDKVRMVRFG------SSVELCGGTHTGATG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I+SES+I AG+RRIEA+TG++A   L   ++ ++++A +L   Q  VV  V+++
Sbjct: 675 NIGFFKILSESAISAGVRRIEAVTGEQAEKVLYAAEDTMRNIAEYLNNPQ--VVQAVKKM 732

Query: 764 WEEYRKL-QLIHAKRKLQL 781
            E    L + + + R+ Q+
Sbjct: 733 LESNETLSKEVESMRREQV 751


>gi|298372626|ref|ZP_06982616.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275530|gb|EFI17081.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 867

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 350/921 (38%), Positives = 512/921 (55%), Gaps = 93/921 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N    R  FL+FF+   H+++PS+ ++  +DPTLMFTN+GM  FKNI  G +   Y  V 
Sbjct: 2   NSKETRKAFLDFFRGKQHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYTRVA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ LT+   LD+
Sbjct: 62  DTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEFLTEVIKLDK 121

Query: 123 RRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY+TV++         D+EA  +W++   L  ++II     DNFW M + GPCGPCSE
Sbjct: 122 DRLYVTVFEGSKEDGLSRDDEAAAMWEQF--LPKERIIDGNKKDNFWEMGDVGPCGPCSE 179

Query: 175 IFFD---QGE-CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           I  D   Q E     GL   +    + IEIWNLVFMQ++++       LP   IDTGMG 
Sbjct: 180 IHIDIRPQAERDAVDGLTLVNGSHPQVIEIWNLVFMQYDRKADGSLTSLPNKVIDTGMGF 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+   LQ K++NYD D+F+ +IQ   +++GM Y  +    V  RVI DH+R+ +F IAD
Sbjct: 240 ERLCMALQGKSSNYDTDIFQPIIQEIAKISGMSYRQDAKTDVAMRVIADHIRTIAFSIAD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G LP+N   GYV+RRI+RRA+ Y    LG  E  M  L+P LC+ MG  + E+I  + LI
Sbjct: 300 GQLPSNAKAGYVIRRILRRAVRYGYTFLGQREAFMYRLVPILCSVMGDNFTEIISQRDLI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ ++ E+E F +TL+ G+ LL+  +    K  +L+G+VAF LYDT+G PLD+ + IL  
Sbjct: 360 EKVIKEEEEAFLRTLETGIRLLEKNMP-TAKGGVLSGEVAFTLYDTYGFPLDLTELILRE 418

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466
            G+  +D+  F+  +++Q+ RAR       + T E   W  + +  G + F+GYD     
Sbjct: 419 NGMT-VDVAEFDSEMKKQKERAR------NAATVETDDWVVVSD--GDSLFVGYD----- 464

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
           ++  E + +  +K                V+Q        + +  ++V  QTPFYAE GG
Sbjct: 465 QYCTETKIIRYRK----------------VKQK-------NKEYYQLVLSQTPFYAEKGG 501

Query: 527 QLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+GD G   G  DG  ++I D  K    + VH  + ++       +    I+ ++R   +
Sbjct: 502 QVGDRGKLTGSEDGSLVEIFDT-KTENNLHVH--LADKLPSNVAQTFTAEINTESRLATA 558

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATH+LH AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E   N  I 
Sbjct: 559 RNHTATHILHEALREVLGKHVEQKGSYVCADNLRFDFSHFQKMTDDEIRRVETIANRRIR 618

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P+   R +   +A A GA AL G KY + VRVV          S  LCGGTHVS TG
Sbjct: 619 DNYPLEEMRQLPIAEARAMGAIALFGEKYGETVRVVKFG------SSVELCGGTHVSRTG 672

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ IV+ESS+ AG+RRIEAITG+          EKL  +  ++  S   +     ++
Sbjct: 673 DIGMVKIVAESSVAAGVRRIEAITGEAV--------EKLIYMHEYVISSAKELFNNTPDL 724

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-----------VNFMS--HIISEVDSKELK 810
            +  +    +   ++LQ  VED S  KIA            VN +   H+ + +    +K
Sbjct: 725 LKAIQ--HAVKENKELQKRVEDFSREKIASMCQELLKEARTVNGIRQIHLKTTLPPDMIK 782

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           ++M  L+      +  ++G   + K S+ ++V++DL+ + FNAV + R +AK +  GGGG
Sbjct: 783 TLMFQLRNTSNDNLFAVIGSVHDNKPSLTVLVSDDLVAKGFNAVQIVRQAAKHI-QGGGG 841

Query: 870 GRPHMAQSGGPNGNKADQAIA 890
           G+P  AQ+GG N N  D AIA
Sbjct: 842 GQPFFAQAGGKNPNGLDDAIA 862


>gi|297155787|gb|ADI05499.1| alanyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 889

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 343/906 (37%), Positives = 513/906 (56%), Gaps = 68/906 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +    +V
Sbjct: 4   AEIRRRWLRFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRAVSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTSVEEGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY ED+EA ++W+ + G+ A++I R+    NFWSM   GPCGPCSEI +D+
Sbjct: 119 LEPEKLWITVYKEDDEAERIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E+   + K++  IL   P  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + +I  + ++TG+ Y    ++ V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVHNMYETDNLRAVIDKATELTGVAYGAGHDSDVSLRVVADHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   R+LG TE ++  L+  +   MG  YPEL+  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRILGATELVVGELVDVVLKTMGQQYPELLTDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTDTKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + +  G+T F GY        
Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADTSGSTVFTGYTD------ 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G S+IV  +V  G     A  G +VEVV D+TPFYAE GGQL
Sbjct: 471 ----------------TEGESTIVGLLVD-GLPSPAATEGDEVEVVLDRTPFYAEGGGQL 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D+G   +  G  +++ DVQ+   G+ VH   V+ G +         ID + RR ++  H
Sbjct: 514 ADSGRIRLDSGAVVEVRDVQQPVPGVSVHKGTVQVGEVTVGAGAYAQIDIKRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS  +P   RFD      +  A L  +E  +N+++++ L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGAVLTDVEQKINEVLSREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M+ E+A   GA A  G KY DRVRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVTAEVMSMEEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS----QGNVVGRVEEI 763
           + ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K         + G + ++
Sbjct: 689 VKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSRLTDLVKGRPEELPEKISGMLAKL 748

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKK 819
            E  ++++   A++ LQ      +  K  DV  ++ +  +V     + +L+ ++  ++ +
Sbjct: 749 KEAEKEIERFRAEKVLQAAAGLAAGAK--DVRGVALVTGQVPDGTSADDLRKLVLDVRGR 806

Query: 820 IQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           IQ     ++ L  ++  +  +V I   E   +R   A DL R +AK L GGGGGG+P +A
Sbjct: 807 IQGDRPAVVALFSVANGRPVTV-IATNEAARERGLKAGDLVRAAAKAL-GGGGGGKPDVA 864

Query: 876 QSGGPN 881
           Q GG N
Sbjct: 865 QGGGTN 870


>gi|320120352|gb|EFE28354.2| alanine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 881

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 319/857 (37%), Positives = 496/857 (57%), Gaps = 69/857 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +V+ IR ++L+FF    H + PS  L+P ND +L+  N+GM P KN F G EKP    
Sbjct: 5   FKSVNEIRKSYLDFFASKDHYVSPSFPLVPINDNSLLLINAGMAPLKNYFMGIEKPPKNR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           ++T QKC+R G    D++NVG T RH TFFEMLGNFSFG YFK  AI  AW+ +T   ++
Sbjct: 65  MSTCQKCIRTG----DIENVGITARHATFFEMLGNFSFGNYFKNEAIAWAWEFVTTVLEI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQ 179
               L++TVY+ED+EA+ +W+   G+S D+I+R+   DNFW +   TGPCGPCSEI+ D+
Sbjct: 121 SPELLWVTVYEEDDEAYNIWRDKIGVSEDRIVRLGKEDNFWEIGTGTGPCGPCSEIYIDR 180

Query: 180 G--------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           G         C PG       + +R++E WNLVF QF ++  +    LP  +IDTGMGLE
Sbjct: 181 GAEFGCDDEHCKPGC------DCDRFLEFWNLVFTQFNKEEDKTLTPLPHPNIDTGMGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ   + +DID  + +I+  E++  +KY  +    ++ R+I DH+R+ +FLI DG
Sbjct: 235 RVACMLQGVDSIFDIDTMQDIIRKIEELLHVKYREDSKKDISIRIITDHIRAVTFLIGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRR++RRA  + +LLG   P +  L+  +      AYPEL + +  I +
Sbjct: 295 VIPSNEGRGYVLRRLLRRAARHGKLLGMDRPFLHELMSKVIEINADAYPELKEKQEYIYK 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++ E+++F +T+ +GL +L   ++ +    + +++ + AF+LYDT G P D+ ++IL  
Sbjct: 355 VIKVEEDKFEETIYQGLEILREEMNRMKDTNETMMSPEKAFRLYDTFGFPFDLTKEILTE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G + ++   F + +E+QR+RAR+      +   +K   SL      T F GY     + 
Sbjct: 415 EGFS-VEEEGFYEEMEKQRNRARSARKDSDNEGWKKENISLD--LEPTVFEGY-----TS 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F +E                 +SI+ +IVQ+  +++ A  G K   + ++TPFYAE+GGQ
Sbjct: 467 FTEE-----------------ASII-SIVQEDALIQTAKKGDKAIFILNRTPFYAESGGQ 508

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G       ++ +   +K    + +H   V  G +    S++  I+   R +   NH
Sbjct: 509 VGDIGILESQRGKVSVIQTKKGNNDVIMHIGEVIEGEISVGDSMIAEINESRRNETMRNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL T+LG+HV+Q GS +TP+ +RFD TH + +T  EL+ +E  VN  I   L
Sbjct: 569 SATHLLHKALRTVLGNHVTQAGSFVTPERVRFDFTHFEAMTKEELQKVELAVNGAIYSYL 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V  + M  E A   GA AL G KY   VRVVS+     G +S  LCGGTHVS+T EI +
Sbjct: 629 EVTCQEMAIEKAKEKGAMALFGEKYGQTVRVVSM-----GDYSVELCGGTHVSNTSEIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES + +G+RRIEA+TG +    L  Q+  L+ L+  +K  Q  +  RV     E+
Sbjct: 684 FKIVSESGVASGVRRIEAVTGMKVYEVLKKQEGLLEDLSEKMKTKQDQLSERV-----EH 738

Query: 768 RKLQLIHAKRK--------LQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQ 817
           + ++L  AK++        LQ N++++  H   ++D+  +++    VDS +L+++  +L 
Sbjct: 739 QIVELKEAKKEIAQLKNTILQENMDNIMSHCIDVSDLKLLTNEFENVDSDDLRNIAQSLV 798

Query: 818 KKIQSGIIMLVGISKEK 834
            K  + +++L     EK
Sbjct: 799 DKDDTLVVVLASKKDEK 815


>gi|167756780|ref|ZP_02428907.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402]
 gi|237734498|ref|ZP_04564979.1| alanyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|167702955|gb|EDS17534.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402]
 gi|229382318|gb|EEO32409.1| alanyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 869

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 333/901 (36%), Positives = 506/901 (56%), Gaps = 71/901 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH++ PS SLIP +DPTL++ N+G+   K  F G   P    +T  
Sbjct: 7   NQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAAIKKYFDGTITPDNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+LLT E  F  ++
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKDAIDFAWELLTDEKWFAFEK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYITV+D DEEA+  W  + G++ D +++  T  NFW + E GPCGP SEIF+D+GE 
Sbjct: 123 DKLYITVHDHDEEAYDYWVNVKGVAVDHMLK--TPGNFWEIGE-GPCGPDSEIFYDRGEK 179

Query: 183 I-PGGLPGS----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
             P GL         E +RYIEIWNLVF Q+  Q    +++   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPDGLGTKLFYEELENDRYIEIWNLVFSQYNSQEGVAREDYKELPQKNIDTGMGLERIT 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +++Q    N+D D F  +I   E++  + Y+ N +  +RVI DH+R+ +F +ADG L  N
Sbjct: 240 SIIQGGETNFDTDFFLPIIHEVEKLANVSYQENKMA-YRVIADHIRTVTFALADGALFDN 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRRI+RRA+ Y + +G  +  M  L+  +   M   Y  L +    I + ++ E
Sbjct: 299 AGRGYVLRRILRRAVRYGKQIGIEKAFMYDLVDVVSEIMKEFYDYLPEKVSYISDLVKKE 358

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F KTL  G  LL  +++    D +++G  AFKLYDT+G P ++  +I     L  +D
Sbjct: 359 EEAFHKTLTNGEKLLSSIIAK-NTDGVISGKDAFKLYDTYGFPFELTLEIAEESDLK-VD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F   L+ Q+ R+R       S  ++K              + +DL    ++      
Sbjct: 417 EEAFRAELKVQQERSRGARTDSESMASQK-----------PDLMAFDLPSNFEY------ 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                   D TN ++S+V  + + G  V+        EV+FD T FYAE GGQ  DTG  
Sbjct: 460 --------DPTN-INSVVIGLFKDG--VKTDRIDDYGEVIFDTTTFYAEMGGQCADTGYV 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +  + ++ +V K      +H   ++ G +R    L L +D   R ++  NHSATH+L 
Sbjct: 509 YNENCQGEVINVLKAPNQQHLHFVKLKTGTIRVGDILTLDVDKAKRNKIIANHSATHILQ 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  I+G H++Q GS +    LRFD TH + IT+ +LK IE+ VN++I   + V    M
Sbjct: 569 AALKEIIGKHINQAGSYVDDHRLRFDFTHFEKITNEQLKLIENQVNNVIFDGVAVDIAHM 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +++AI SGA AL   KY D+VRVVS+     G +S  LCGG HVS++  I L  I +E 
Sbjct: 629 TKDEAINSGAMALFDEKYGDKVRVVSI-----GDYSMELCGGCHVSNSANIGLFKIEAEE 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLI 773
           S+ +G+RRIEA+TG+ A   L+ + E +  +++ LK+ ++  VV +V  + EE     L 
Sbjct: 684 SVGSGVRRIEAVTGKTAYQALVQEKETVDIISNILKLKNRKEVVAKVTALTEE-----LS 738

Query: 774 HAKRKL-----QLNVEDLS--CHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSGI 824
           + K+++     QLN  + +   + I ++N +  +  E  +D+ + K +    + KI+ GI
Sbjct: 739 NTKKEIEILSGQLNALNAASKANDIQEINGVKVLFVEEMIDAAKAKQLAFDFRDKIEEGI 798

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++LV    E K S  + VT++ +   + A D+ +    V+  G GGG+P  AQ G P  +
Sbjct: 799 VILV-TQFEDKCSYFVGVTKNYVATGYKAGDIIKKINAVV-DGRGGGKPDFAQGGCPIND 856

Query: 884 K 884
           K
Sbjct: 857 K 857


>gi|145220398|ref|YP_001131107.1| alanyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|145206562|gb|ABP37605.1| alanyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 893

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 326/871 (37%), Positives = 486/871 (55%), Gaps = 79/871 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y      
Sbjct: 12  SDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRAADT 71

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT  + L + R
Sbjct: 72  QKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLPEER 131

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY TVY +D+E+F++W++ + +  D I+R    DNFW M ETGPCGPCSEI  D     P
Sbjct: 132 LYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHID---LTP 188

Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G   +  + +  + IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K++
Sbjct: 189 DGSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKSS 248

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NYD D+F+ L     ++TG++Y  +      +  RVI DH R+ SF ++DG +P+NEGRG
Sbjct: 249 NYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGRG 308

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ YA+ LGY +P++  L+  +   MG  +PEL   +  +   +++E+E F
Sbjct: 309 YVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEESF 368

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TLDRG+ + +G++  +  +    L G+ AFKLYDT+G P D+ + +  + GL  +D  
Sbjct: 369 LVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGLQ-VDGE 427

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            F + ++EQ++RAR        G  E+    WFS      AT+F GYD L        D 
Sbjct: 428 GFERCMQEQKTRARQDRREKQRGGAEEGSWEWFS---DLHATEFTGYDGLEA------DA 478

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
            ++          G+S   K ++                +V D+TPFYAE+GGQ GD G 
Sbjct: 479 SII----------GISRSKKNLL----------------LVLDRTPFYAESGGQTGDRGW 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-------------LVLTIDYQNR 580
                 RL++TD QK  +  FVH  +V R       S             +  ++D + R
Sbjct: 513 IETGEYRLEVTDTQKDGDS-FVH--VVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLR 569

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +    NH+ATHLLH  L   LG+HV Q GS + P+ LRFD +H   +T  E+ ++E  VN
Sbjct: 570 QATERNHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVN 629

Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           D I Q    +    +  +DAI  GA A  G KY D VRVV +     G+ S  LCGGTHV
Sbjct: 630 DCIRQAEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIP----GI-SVELCGGTHV 684

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVG 758
            + G+I L  IV ESS+ AG+RRIEA+TG+ A   +  +  +L  +   LK+ ++     
Sbjct: 685 DNVGQIGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAE 744

Query: 759 RVEEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           +V  I EE R L+   A+ K     ++L  +  +   +     ++ ++   D++ L+   
Sbjct: 745 KVAAILEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAA 804

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+++      +L   S E K S+    ++
Sbjct: 805 QMLRQQFPLSAGLLCS-SAEGKVSLAAFASD 834


>gi|312870710|ref|ZP_07730817.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|311093722|gb|EFQ52059.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
          Length = 877

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  ++ Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859

Query: 879 GPN 881
           G N
Sbjct: 860 GKN 862


>gi|270292493|ref|ZP_06198704.1| alanine--tRNA ligase [Streptococcus sp. M143]
 gi|270278472|gb|EFA24318.1| alanine--tRNA ligase [Streptococcus sp. M143]
          Length = 872

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 347/925 (37%), Positives = 504/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  + +  E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------PSKLVAIVAENAEV--EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNAEYTLEIDT 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE 
Sbjct: 558 DRRLRVMKNHTATHLLHAALHNILGRHATQAGSLNEVEFLRFDFTHFQAVTVEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQLKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGYRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-NGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLEAVAGKL 872


>gi|229496595|ref|ZP_04390309.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316492|gb|EEN82411.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 873

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 331/910 (36%), Positives = 487/910 (53%), Gaps = 73/910 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F+ FF +  H ++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  + 
Sbjct: 2   TANEIRAAFVAFFAEKQHHIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVEAKYPRIA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   +  
Sbjct: 62  DAQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWEFLHERLGIPA 121

Query: 123 RRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY T++        + D EA   W +   L  ++I+     DNFW M ETGPCGPCSE
Sbjct: 122 DRLYATIFEGAESDGSERDNEAASYWGRF--LPQERILDGNKKDNFWEMGETGPCGPCSE 179

Query: 175 IFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           I      D+      G    + +  + +EIWNLVFMQ+ +       +LP   IDTGMG 
Sbjct: 180 IHIDLRSDEERMQQSGRELVNRDHPQVVEIWNLVFMQYNRMADGSLSLLPHKVIDTGMGF 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+   +Q K +NYD D+F+ LI A  Q++G+ Y  E ++ V  RV+ DH+R+ +F I D
Sbjct: 240 ERLCMAMQGKRSNYDTDVFQPLIGAVAQLSGIPYGKEESSDVAMRVVADHVRTIAFAITD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G LP+N   GYV+RRI+RRA+ Y    LG  E  M  LLP L   MG AYPELI  + LI
Sbjct: 300 GQLPSNAKAGYVIRRILRRAVRYGYTFLGRREAFMYALLPTLIESMGGAYPELIAQRELI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           ++ +R E+E F +TL+ G+ LLD  +  LG    L+G  AF LYDT G PLD+ + IL  
Sbjct: 360 QKVMREEEESFLRTLEAGIKLLDKKIEELGNKGQLSGHDAFVLYDTFGFPLDLTELILRE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F++ + EQ++RAR+      +      W +L E  G T F+GYD      
Sbjct: 420 HGMT-LDQKGFDREMAEQKARARS-----AAQLETDDWVTLAE--GETLFVGYDQTEADC 471

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            +   R V  +                                 +VV   TPFYAE GGQ
Sbjct: 472 SILRYRHVKQKNKDF----------------------------YQVVLSATPFYAEMGGQ 503

Query: 528 LGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           +GD+G  +  +G+R  I D  K+   + VH  ++ +       +    ID + RR    N
Sbjct: 504 VGDSGILVDEEGMRYAIVDT-KRENNLPVH--LMPKLPNDPGQTFRAEIDQERRRMAEAN 560

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS ++P+ LRFD +H   +T  E++ +E+ V   +  +
Sbjct: 561 HTATHLLHQALRMVLGEHVEQKGSFVSPEVLRFDFSHYNKLTPEEIRQVEELVTQAVRAD 620

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            P    R +   +A A GA AL G KY + VRV+          S  LCGGTHV STG I
Sbjct: 621 YPREEHRNIPIAEARAMGAMALFGEKYGEEVRVMKYGT------SIELCGGTHVPSTGMI 674

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSESSI AG+RRIEA+T   A + L  Q++ LK + + L  +  +VV  ++++  
Sbjct: 675 GAFRIVSESSIAAGVRRIEAVTATNAEAFLYKQEDTLKEIKALLN-NTPDVVKALQKLLS 733

Query: 766 E----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI 820
           E      +L  +     ++L  E L+   I    +   ++  E  +  +K +   L+ ++
Sbjct: 734 EESALKSELDTLQRSHAIRLKKELLAS-SIERSGYRLFVLQGEEKADIIKDIAFQLRGEL 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           Q   + +   ++  +  + ++++E+ +    +A +L + +A+++  GGGGG+PH A +GG
Sbjct: 793 QEPFVFVAATTEGARGLLSVMLSEEAVTLGLHAGNLVKEAARLI-QGGGGGQPHFATAGG 851

Query: 880 PNGNKADQAI 889
            + N   QA+
Sbjct: 852 KDANGLPQAL 861


>gi|254527157|ref|ZP_05139209.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538581|gb|EEE41034.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 886

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 335/915 (36%), Positives = 527/915 (57%), Gaps = 74/915 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+F+ +  H+++PS+SL+P +DPT+M T +GM+PFK +F G +E+P  +A T+ Q
Sbjct: 15  IRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+TK + L    +
Sbjct: 73  KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSSDNI 128

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ EDEE+ K+W++  G++ D+I+++   DNFWS  +TGPCGPCSE+++D       
Sbjct: 129 IVSVFHEDEESEKIWREEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNP--EK 186

Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           GL     E+G+R+IE +NLVFMQ  + +  +   L   +IDTGMGLERMA +LQ+K+NNY
Sbjct: 187 GLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSNNY 246

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ + +++ + Y   +    ++ +++ DH R+   LI+DG+  +N GRGY+L
Sbjct: 247 ETDLIFPIIKKASEISSLDYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGYIL 306

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG T+  +  +       M + YP+L     LI   ++ E+ RF +T
Sbjct: 307 RRLLRRMVRHGRLLGITKEFLSDIASVGIKLMENYYPDLKNNNELILSEIKIEEVRFRET 366

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LLD ++S   K  ++ G  AF+LYDT+G PL++ ++I     +  +DI  F + 
Sbjct: 367 LERGEKLLDEIISSGQK--LITGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQRE 423

Query: 422 LEEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           ++ Q+ RA+A S    L L      +I     + +  T F G D L              
Sbjct: 424 MDAQKERAKAASSKIDLTLEGSLEREI-----DSFNKTIFNGEDCLDS------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + ++ I      V++A  GQ+V++V DQT FY E+GGQ+GD G     
Sbjct: 467 -----------EAKIQGIFLDSNFVKKASEGQRVQIVLDQTSFYGESGGQVGDIGIICST 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              + +  V +K + +F+H  IV+ GIL    ++   ++   R + S NH+ATHLL  AL
Sbjct: 516 DAEVLVDKVVRK-KNVFLHDGIVKNGILTVGQTIKTIVNPAKRARASANHTATHLLQSAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++  +VSQ GS +  + LRFD   SKP++  +++ +E  VN  I QN P+V + M + 
Sbjct: 575 KEVVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKR 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA A+ G KY D VRVV V     GV S  LCGGTHV +T E+    I+SE  I 
Sbjct: 635 EALEKGALAMFGEKYGDEVRVVDVP----GV-SMELCGGTHVKNTSELGCFKIISEEGIS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E     LI+  +
Sbjct: 690 AGVRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSE-----LINKNK 744

Query: 778 KLQLNVEDL------SCHKIAD-VNFMSHIISEVDSKELKSVMD-ALQKKIQSG---IIM 826
           ++Q   +++      S H  A+ VN  S +++++D  +  S+   AL    Q G   +++
Sbjct: 745 EIQKMKDEIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVI 804

Query: 827 LVGISKEKKASVLIVVT---EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           L GI   +   +L VV+   E +    +A  L    A++   GGGGG+P+ AQ+G  + +
Sbjct: 805 LAGIPNPENRKLLFVVSFGDEVVKIGLHAGKLINEIARIC-AGGGGGKPNFAQAGARDID 863

Query: 884 KADQAIAGVASFLKK 898
           K D A+    + L+K
Sbjct: 864 KLDFALDYAKNHLQK 878


>gi|159037443|ref|YP_001536696.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|205830198|sp|A8LXY8|SYA_SALAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157916278|gb|ABV97705.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 892

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 333/912 (36%), Positives = 498/912 (54%), Gaps = 76/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L  F+ NGH ++PS+ L   +DP L+F  +GM+ F   F GQ+   Y+   
Sbjct: 2   KTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAWDL TK      
Sbjct: 62  SVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWDLATKSVDAGG 117

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD  R++ TVY +D+EA+++W+ + G+ AD+I+R    DNFWSM   GPCGPCSE+F+
Sbjct: 118 FGLDPERIWPTVYLDDDEAYEVWRSV-GVPADRIVRRGKADNFWSMGIPGPCGPCSELFY 176

Query: 178 DQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229
           D+G    + GG P   E+  RY+E WNLVFMQFE+     K++  IL   P  +IDTGMG
Sbjct: 177 DRGPEYGLEGG-PAVDED--RYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHL 279
           LERMA++LQ   N Y+ID  + ++  + ++TG +Y  +          + V  RV+ DH+
Sbjct: 234 LERMASILQGVDNLYEIDEVRPILDRAAELTGKRYGAHSGHVASESHPDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  M  LLP     M  +YPE
Sbjct: 294 RTALMLIGDGVTPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSPSYPE 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           L      I +   +E++ F  TL  G  +LD  +  S       ++G  AF+L+DT+G P
Sbjct: 354 LAADFGRIADYAYAEEDAFLSTLRAGTTILDTAIAESRTAGRRAISGAQAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456
           +D+  +I   +G+  +D   F + + +QR+RA+A +    +G  +   + ++ ++ G   
Sbjct: 414 IDLTLEIANEQGMQ-VDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVT 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GY      +  +E                  S V+A++ +      AV G  VE+V D
Sbjct: 473 FTGY-----HEVSRE------------------STVRAVLGEAGPRAAAVEGDTVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID
Sbjct: 510 TTPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRAGETGFAEID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L+ +E
Sbjct: 570 ASRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ +  +L V   + +  +A   GA AL G KY ++VRVV V     G ++  LCGG
Sbjct: 630 QQVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGG 684

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+ +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V
Sbjct: 685 THVARSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQV 744

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
             RVE+   + R  +    K + QL          +  +V  ++++ +E       + + 
Sbjct: 745 ADRVEQTVSQLRDAEKELEKLRAQLVLGGAAALAAQATEVRGVAYVGTEAPEGASGNDVR 804

Query: 815 ALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
            L ++I+  I      ++ V      KAS+++ V +    R  +A DL     K    G 
Sbjct: 805 TLAQEIRGRIDPARPAVVAVAARSNGKASLVVAVNQAARSRGLSAADL----VKAAFAGR 860

Query: 868 GGGRPHMAQSGG 879
           GGG P +AQ GG
Sbjct: 861 GGGSPELAQGGG 872


>gi|317124715|ref|YP_004098827.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
 gi|315588803|gb|ADU48100.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
          Length = 890

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 342/918 (37%), Positives = 517/918 (56%), Gaps = 70/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF+  GH ++PS+ L+  +DP L+F N+GMVPFK  F GQE P Y   T+V
Sbjct: 4   AEIRRRWLSFFESRGHTVVPSAPLV-HDDPNLLFVNAGMVPFKPYFLGQETPPYARATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE A+ LAW+L+T       + 
Sbjct: 63  QKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAVALAWELVTTPQSQGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D++ LY +VY ED+EA  +WK+++GL  D+I+R+   DN+W+M   GP GPCSEI  D+
Sbjct: 119 FDEKDLYASVYHEDDEAIAIWKRVAGLPDDRIVRLGKKDNYWNMGVAGPGGPCSEILIDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQ--FEQQNKQERF----ILPKMSIDTGMGLERM 233
           G     G     E G+RY+E WNLVFMQ        ++ F     LPK +IDTGMGLER+
Sbjct: 179 GPEF--GADRDWEAGDRYLEFWNLVFMQDDLSAVRAKDDFDIAGPLPKRNIDTGMGLERV 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I A+E+++G +Y  N  + V  RV+ DH+RS+  LI DG+ 
Sbjct: 237 AYLLQGVDNLYEIDEVFPVIAAAEELSGRRYGANLEDDVRFRVVADHVRSALMLIGDGVT 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+   RLLG   P + HLLP    +M ++YPEL +    I +  
Sbjct: 297 PGNEGRGYVLRRLIRRAVRSMRLLGVDAPTLEHLLPVSKDQMRASYPELERGFGRISQVA 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E++ F +TL  G  +LD  ++         L+G  AF+L+DT+G P+D+  ++   +G
Sbjct: 357 YAEEDAFRRTLTAGTTILDVAVTKAKSSGSATLSGSEAFQLHDTYGFPIDLTLEMAAEQG 416

Query: 410 LAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGS 466
           L  +D   F + + EQR RA+A   S  +  G    ++  + +  G   +F GYD     
Sbjct: 417 L-NVDEAGFRRLMAEQRDRAKADARSKKMAHGDV-SVYRQVADSLGRDVEFTGYD----- 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                  +V+             S V+ +++ GE+V  A +G+++EVV D+TP YAE+GG
Sbjct: 470 -------EVVS-----------DSRVRGLIRGGELVSTAHAGEEIEVVLDRTPLYAESGG 511

Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G   + +G  +++ DVQK   G+ VH A V  G   T       +D   RR +S 
Sbjct: 512 QLADRGRIRLANGALIEVRDVQKPINGLIVHRATVLEGEAVTGDDAEAVVDVVRRRSVSR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ATH++H AL   LG   +Q GS  +P  LRFD     P+    +  IE  VN ++  
Sbjct: 572 AHTATHMVHQALREELGETATQAGSENSPGRLRFDFKAQSPVPLEAMADIEAKVNSVLLD 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V   +M+ ++A   GA AL G KY +RVRVVS+     G  S  LCGGTH    G++
Sbjct: 632 DLAVTADVMSLDEARRMGALALFGEKYGERVRVVSI-----GDWSIELCGGTHALRVGQL 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            ++ ++ E+SI +G+RR+EA+ G  A +HL  +   +  L   LKV    +  R+  I  
Sbjct: 687 GVVKLLGEASIGSGVRRVEALVGSDAYTHLAREAAIVGQLTDQLKVRTEELPQRIASILS 746

Query: 766 EYRKLQL-IHAKRKLQL--NVEDL--SCHKIADVNFMSHIISE-VDSKELKSVMDALQKK 819
           + ++ +  I A ++ Q+      L  +   IA V F+SH   + V + +L++++  ++++
Sbjct: 747 KLKEAEKEIAAVKQAQVLGAAPGLVATARDIAGVTFVSHDAGDGVTADDLRALVLEVRRR 806

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-----ARLSAKVLGGGGGGGRPHM 874
           + +    LV ++       +++V  +  DR     L      R +A+VL GGGGGG+  +
Sbjct: 807 LGTDRPSLVSMAAVSNGRPIVIVATN--DRAREAGLKAGLFVRTAAQVL-GGGGGGKDDI 863

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ GG + +    A+  V
Sbjct: 864 AQGGGTDASMVSAALGAV 881


>gi|309805990|ref|ZP_07700016.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|312872876|ref|ZP_07732938.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|325913725|ref|ZP_08176086.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|308167593|gb|EFO69746.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|311091610|gb|EFQ49992.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|325476925|gb|EGC80076.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 877

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  ++ Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859

Query: 879 GPN 881
           G N
Sbjct: 860 GKN 862


>gi|254779785|ref|YP_003057891.1| alanyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254001697|emb|CAX29926.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Helicobacter
           pylori B38]
          Length = 847

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 335/880 (38%), Positives = 493/880 (56%), Gaps = 61/880 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++    G  +      + ++   Y   +F+GY+               C   P
Sbjct: 416 MQEQVKRSKTSWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------C---P 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
             +     S  K I        EA   Q+V V+ ++TPFYAE GG +GD G  + D    
Sbjct: 458 AKVLGFFDSDFKEIT-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGTLLKDNEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 ALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +    LRFD +H+K + + EL+ +ED VN  I ++L      M    A  
Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNNEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q    K  + +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
              DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+    KE +   L  
Sbjct: 738 ---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERITLAC 789

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++   + NA   A   A++L GG GGGR   A +GG +
Sbjct: 790 GVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKD 826


>gi|116491184|ref|YP_810728.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|122276634|sp|Q04EQ9|SYA_OENOB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116091909|gb|ABJ57063.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1]
          Length = 885

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 334/923 (36%), Positives = 502/923 (54%), Gaps = 75/923 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  FL+FFQ  GH++ PS SLIP +DP+L++ NSG+   K  F G   P    +T
Sbjct: 5   NSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
             QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+LLT    + +
Sbjct: 65  NAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPEWYGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +L+IT Y  D E  +LW+  +   A   I    +DNFW + E GP GP +E+FFD+G
Sbjct: 121 EPEKLFITYYPRDTETKELWESQADFVAGHTI--PQDDNFWDIGE-GPSGPDTEVFFDRG 177

Query: 181 -----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225
                      E  PGG      E ERY+EIWN+VF QF       +  +   LP  +ID
Sbjct: 178 PKFQNLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNID 231

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSS 283
           TGMGLER+ ++ +    N++ DLF  +I+  EQ++G +Y    +  V+ +VI DH+R+ +
Sbjct: 232 TGMGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVITDHIRAVT 291

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG LP N GRGYV+RR++RRA+ + R L   +P +  L+P +   M + YPE+++ 
Sbjct: 292 FAISDGALPGNTGRGYVIRRLLRRAVMHGRKLEIEKPFLTQLVPIVGKIMEAYYPEILEN 351

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIM 401
           +  I   ++SE+ RF KTL  GL LLD ++    KD    ++G  AFKL+DT+G PL+  
Sbjct: 352 EDKIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATQISGKDAFKLFDTYGFPLEST 411

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGY 460
           ++     GL  +D  SF++ +++Q++RAR     L + G  ++   SLK     + ++G+
Sbjct: 412 EEQAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQDEALMSLKV---PSVYVGW 467

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                            ++  +D      + + AI+   + V++A +GQK  ++FD+TPF
Sbjct: 468 -----------------KQSSVD-----DAKIAAIIVDDQQVDDAKAGQKALLIFDKTPF 505

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ D G   A    +  Q+TDVQ       +H A +    L+    + L +D  
Sbjct: 506 YAEMGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISD-LKIGQKVNLRLDMH 564

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
               +S NH+ATHLL  AL  ++  ++ Q GS + PD LRFD TH  P+ +  L  IED 
Sbjct: 565 RHVAVSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDL 624

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  IA  LPV     + E A   GA A+ G KY  +VRVVS+     G  +    GGTH
Sbjct: 625 VNQKIADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTH 679

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVV 757
             +T E+ L  IVSES I AG RRIEA+TGQ A   L   ++ LK  A FL   +  +V 
Sbjct: 680 AKNTSELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVP 739

Query: 758 GRVEEIWEEYRKLQ-LIHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
            ++ ++    + +Q  + +      NV  D    K  +    S+I +++D++ +  +   
Sbjct: 740 DKIVDLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKI 799

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHM 874
           + +  Q  +  L+ I+       L+V      +   A ++ + +S K+   GGGGGRP  
Sbjct: 800 VDEWRQRAVSDLIIIATNNNGKALLVAASAKPNEVKAGNVVKAISPKI--QGGGGGRPDF 857

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ+GG N      A+A V+ +L+
Sbjct: 858 AQAGGKNPAGIANALASVSEYLE 880


>gi|309803595|ref|ZP_07697687.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|309809661|ref|ZP_07703517.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|312875207|ref|ZP_07735220.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|308164343|gb|EFO66598.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|308170021|gb|EFO72058.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|311089314|gb|EFQ47745.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 877

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  ++ Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 418 A-VDKEEFDAEMKAQKDRARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859

Query: 879 GPN 881
           G N
Sbjct: 860 GKN 862


>gi|302190972|ref|ZP_07267226.1| alanyl-tRNA synthetase [Lactobacillus iners AB-1]
          Length = 877

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 516/903 (57%), Gaps = 73/903 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  +  Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 418 A-VDKEEFDAEMRAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859

Query: 879 GPN 881
           G N
Sbjct: 860 GKN 862


>gi|227499550|ref|ZP_03929657.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227218309|gb|EEI83563.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 870

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 324/908 (35%), Positives = 507/908 (55%), Gaps = 58/908 (6%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R+ +L FF  K GH LL S  LIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRSKYLNFFGNKKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A++ LTKE ++ +
Sbjct: 66  SSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAISWAYEFLTKELEISK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             L++TV+ ED+EA+ +W +  G+++++I+R    DNFW + E GPCGPCSEIF D+G  
Sbjct: 122 DDLWVTVFKEDDEAYNIWHEHIGIASERILREGKEDNFWEL-EVGPCGPCSEIFVDRGAD 180

Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             I      PG ++  +R++E+WNLVF QF +  +     L   +IDTGMGLER+A VLQ
Sbjct: 181 RAIDENDNKPG-NDNSDRFMEVWNLVFTQFNKDAQGNYTPLSHPNIDTGMGLERIAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K N +++D+   +I   E++   KY+ N  + V+ RVI DH ++ +FL+ DG++P+NE 
Sbjct: 240 NKDNIFEVDVMAAIISEIEKLANKKYKENKKDDVSIRVIADHSKAMTFLVCDGVIPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     +  ++  +       Y EL   +  I++ +R E+E
Sbjct: 300 RGYVLRRLIRRAYRHGKLLGIDGEFLTKIVDKVIDTYKVEYDELETNRDKIKDIIRDEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF KT+D+GL  L+ ++  + +   ++L+G  AFKLYDT+G PLD+ ++IL  + L  +D
Sbjct: 360 RFQKTIDQGLERLNSLIDAIERVHGKLLDGKEAFKLYDTYGFPLDLTKEILEEKDL-DVD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +FN  ++ Q+  AR         + + I     +    T+FIGYD L           
Sbjct: 419 EKTFNDQMQIQKQTARDARKKDAGWSLDNI---NTDGLAKTEFIGYDKL----------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        + + +  I ++         G    ++ D+T FYAEAGG++ DTG  
Sbjct: 465 ------------AIEAEILDIFEENSEASSISEGNNGIIISDKTSFYAEAGGEVADTGII 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +  R ++ DVQK+ + I+ H+  V  G +         +D   R  +  NHSATHLL 
Sbjct: 513 FNNSFRAKVIDVQKQKD-IYFHYVEVLSGEITKGQIATFEVDRDRRFDIQRNHSATHLLD 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG  + Q GS +    LRFD +++K +T  E+K +ED VN  IA+   V   I+
Sbjct: 572 QALRDVLGEGIKQAGSLVDEYKLRFDFSYNKAMTKEEIKEVEDIVNRQIAKQELVTKEIV 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + +   GA  L   KY D+VRVVS+     G +S  LCGG HV+ T +I++  I  E+
Sbjct: 632 DYKQSQQMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKINQET 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG++A   L   +  LK +AS L  +   ++ R+E +  E    +   
Sbjct: 687 SVSAGVRRIEAVTGRKAYELLTKSENSLKVIASKLNTNVSTIINRIESLENEIENYKKDI 746

Query: 775 AKRKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           ++ K   N  D+     ADV      N +      V   EL+   + ++    + II+  
Sbjct: 747 SRLKSN-NSSDIVNELKADVKEIKGINLLVKKFDNVPMDELRDYENRIKNSFDNLIIVFA 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S   K    + V ++L +++NA  + R  A++  GG GGG+ + AQ+GG N +K D+A
Sbjct: 806 SVS--DKIVFTVSVDDNLTNKYNAGKIVREIAQIT-GGNGGGKKNFAQAGGKNISKLDEA 862

Query: 889 IAGVASFL 896
           +  V+  +
Sbjct: 863 LKKVSEII 870


>gi|110802307|ref|YP_699065.1| alanyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|122956614|sp|Q0SS42|SYA_CLOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110682808|gb|ABG86178.1| alanine--tRNA ligase [Clostridium perfringens SM101]
          Length = 879

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 342/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +TT 
Sbjct: 7   NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE   
Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   L  S  + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q  
Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L   +S + +  +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI 
Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +FN+ ++EQR RAR     +  +G       K+  S+      T+F GY  L        
Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH
Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  ILG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T
Sbjct: 571 MLHEALKEILGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M+ ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IV
Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
           SES + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++  
Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
            ++   K KL    ED       ++N +  + +E   VD   L+ + D ++ K+ +GI++
Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L       K +++ + T++ L   N V   ++      + GGGGGGRP MAQ+GG N   
Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862

Query: 885 ADQAI 889
             +A+
Sbjct: 863 IAKAL 867


>gi|322376246|ref|ZP_08050739.1| alanine--tRNA ligase [Streptococcus sp. M334]
 gi|321282053|gb|EFX59060.1| alanine--tRNA ligase [Streptococcus sp. M334]
          Length = 872

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 350/926 (37%), Positives = 511/926 (55%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--KDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I    +  Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESRFNYEASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       LTID
Sbjct: 498 PFYAEMGGQVADHGQILDESGKVVAIVTNVQKAPNGQALHTVEV-LAPLALNQEYTLTID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|182625718|ref|ZP_02953487.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177909120|gb|EDT71595.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 879

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +TT 
Sbjct: 7   NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE   
Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   L  S  + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q  
Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKVIKLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L   +S + +  +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI 
Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +FN+ ++EQR RAR     +  +G       K+  S+      T+F GY  L        
Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH
Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T
Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M+ ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IV
Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
           SES + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++  
Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
            ++   K KL    ED       ++N +  + +E   VD   L+ + D ++ K+ +GI++
Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L       K +++ + T++ L   N V   ++      + GGGGGGRP MAQ+GG N   
Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862

Query: 885 ADQAI 889
             +A+
Sbjct: 863 IAKAL 867


>gi|116333833|ref|YP_795360.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269480|sp|Q03R43|SYA_LACBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116099180|gb|ABJ64329.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 879

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 338/926 (36%), Positives = 504/926 (54%), Gaps = 91/926 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF+  GH + PS+SL+P +DP+L++ NSG+   K  F+GQ  P    +T+ 
Sbjct: 7   SQIRQMYLDFFKSKGHTIEPSASLVPKDDPSLLWINSGVATMKKYFSGQVVPENPRLTSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  AW+LLT    F  D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTLFEMLGNFSVGDYFKKEAIAWAWELLTSPDWFGWDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D +A   W+ + G++ D II +   DNFW + E GP GP SEIF+D+GE 
Sbjct: 123 DKLYMTVYPKDTDAKDAWEAV-GVAPDHIIAV--EDNFWDIGE-GPSGPDSEIFYDRGEA 178

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+E+WN+VF QF  +       LP+ +IDTGMGLER+ +
Sbjct: 179 FNNLAADDPENYPGG--ENERYLEVWNIVFSQFNHEPDGTYKPLPRKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           + Q    N++ DLF  LI+ +  ++  K+ G N    ++ +VI DH R+ +F I DG LP
Sbjct: 237 IFQNAKTNFETDLFMPLIEKTAALSAGKHYGANAEDDISFKVIADHARAITFAIGDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYV+RR++RRA+   + LG     +  L+P +   M + YPE+++    I + +R
Sbjct: 297 GNEGRGYVIRRLIRRAIVNGQKLGIEGAFLDQLVPVVGQIMQAYYPEVLEQSDYIAKVVR 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           SE++RFG+TL  GL LL+ +++ L   G ++I   D AFKLYDT+G P+++ ++    +G
Sbjct: 357 SEEDRFGETLTDGLNLLNSLIADLKQQGGNQIAGAD-AFKLYDTYGFPVELTEEYADDQG 415

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           +  +D   F   +++Q+ RAR A       G    +  ++K     ++++GY  L     
Sbjct: 416 IT-VDEAGFKAEMQKQKDRARNARGKQKAMGLQHDLLINVKTP---SEYVGYTQL----- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               +S +  +V   E+V+   SG   E +FD TPFYAE GGQ+
Sbjct: 467 ------------------ATTSKLTVLVAGDELVDHVTSG-TAEAMFDVTPFYAEMGGQV 507

Query: 529 GDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  + +   +   + DVQ    G  +H   V    + T  +  L +D     ++  N
Sbjct: 508 ADKGDILDEAGHVVAHVADVQHAPNGQNLHTLTV-VAPMETGATYQLKVDTIFHSKVEKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  + G H  Q GS +  D LRFD TH   +  A+L   E  VN  I + 
Sbjct: 567 HTATHLLDKALREVFGEHTQQAGSLVEGDYLRFDFTHFGQVDPADLAKAEALVNQKIFEE 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV T   + E A   GA AL   KY   VRVVS      G   +  CGG HV +T EI 
Sbjct: 627 LPVTTVETDIESAKKMGAIALFSEKYGKVVRVVSA-----GDFVTEFCGGNHVKNTNEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  I SES + AG+RRIEA+T   A ++L   DE L ++ + LKV+Q      V+EI ++
Sbjct: 682 LFKITSESGVGAGVRRIEAVTSAAAYAYLHDHDEILNAVGADLKVTQ------VDEIEQK 735

Query: 767 YRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHI--------------ISEVDSKELKS 811
            + LQ  + A  + Q  +E     + A   F  H+              +S++D  +L++
Sbjct: 736 VQALQAQVKALEQQQATLEGKLASQEAGAVF-DHVTTAGNYQLISGTVQVSKMD--QLRA 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGG 870
           + D  + +  S +++L G     KA++++ V+ D   +  A DL + +S K+   GGGGG
Sbjct: 793 LADTWRDQALSDVLVL-GAEVNGKANLIVAVSADKQKQVKAGDLIKAISPKI--NGGGGG 849

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           RP++AQ+GG N      A+   A +L
Sbjct: 850 RPNLAQAGGKNPAGLPDAMTAAADWL 875


>gi|284929441|ref|YP_003421963.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809885|gb|ADB95582.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 880

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 334/910 (36%), Positives = 520/910 (57%), Gaps = 77/910 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL F++   H++ PS+SLIP  DPT++ T +GM+PFK IF GQEK  +  +TT 
Sbjct: 11  NEIRDKFLHFYKGKKHQIFPSASLIP-RDPTVLLTIAGMLPFKPIFLGQEKSSFSRITTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND+DNVG T RHHTFFEMLGNFSFG YFKE++I+ AW+L T+ F L    
Sbjct: 70  QKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEQSIRWAWELSTQIFLLPPES 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + ++V++ D+EAF +W+ I G+   +IIR+   DNFW   +TGPCGPCSE+++D    + 
Sbjct: 126 IVVSVFESDDEAFNIWENIIGIPQTRIIRMGEKDNFWKAGKTGPCGPCSELYYDFHPEL- 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G    + E+  R+IE +NLVFM++ +      F L K +IDTGMGLERMA +LQ+  NNY
Sbjct: 185 GEQNLNLEDDSRFIEFYNLVFMEYSRDENGNLFPLGKKNIDTGMGLERMAQILQKVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I++   +  ++Y   E N   + ++I DH+R+   +IADGI  +N  RGYVL
Sbjct: 245 ETDLIFPIIESILNIIAIEYRHAEENTKKSLKIIGDHIRAVIHMIADGITASNTDRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RR + + RL+G     +  +          +YPE+ + ++ I + L  E++ F KT
Sbjct: 305 RRIIRRIIRHGRLIGIEGKFINKIAQTAIQISEKSYPEVREKEIFISKELSKEEDIFLKT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  ++ +  K   ++G  AF LYDT+G PL++ Q+I     L  ++I  F + 
Sbjct: 365 LERGEKLLCEIIDNTIKPNQISGLDAFILYDTYGFPLELTQEIAEESQLK-VNIDEFYEQ 423

Query: 422 LEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           ++ Q+ R++A     +L LG    + I         AT+F GY                 
Sbjct: 424 MKLQQCRSKAAHENINLSLGYEINKLI-----SDVDATKFTGYS---------------- 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                DL + V  +VK I+   ++V++A  G  V+++ D TPFYAE+GGQ+ D G  +G 
Sbjct: 463 -----DLNSSV--VVKKILVNQKVVQQAEKGNNVQIILDSTPFYAESGGQVSDHGYLVGH 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              ++I D+QK++E +F+H+  +E G L T  +L   +D   R+ + +NH++THLL  AL
Sbjct: 516 KSFIRINDIQKESE-VFIHYGKIEEGYLLTNETLDAVVDNNYRQCIKLNHTSTHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              L S ++Q GS +T D LRFD  +   IT  +++ IE+ VN  I++   V    M+ +
Sbjct: 575 RKNLDSSITQAGSLVTFDRLRFDFQYPHQITIEQIEQIENTVNFWISEKHDVSIENMSLK 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA A+ G KY++ VRV+ +        S  LCGGTHV++  EI L  I+S++ I 
Sbjct: 635 VAKEKGAIAMFGEKYSEEVRVIDIPE-----ISMELCGGTHVNNIAEIGLFKIISQTGIS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEAITG     +L  +D  +K+L    KV    +  R+  +  + +  Q     +
Sbjct: 690 SGVRRIEAITGSAILEYLKVKDSIVKNLCEHFKVKPEEIQKRIISLQTDLKDTQ-----K 744

Query: 778 KLQLNVEDLS---CHKIADV-----NFMSHIIS---EVDSKELKSVMDALQKKIQSGIIM 826
           +L++  ++L+     K+ D+     N +  I+S    VD K L+   + LQ K+  G ++
Sbjct: 745 QLEIVQQELAMVKSDKLLDIAESLDNDLKIIVSNVGNVDKKALQHSAERLQNKLGEGAVV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-KVLG------GGGGGGRPHMAQSGG 879
           L       K S++   ++ +    N      LSA K +G       GGGGGRP++AQ+GG
Sbjct: 805 LGATLPGNKVSLVASFSKKIYKDKN------LSAGKFIGEIAQICEGGGGGRPNLAQAGG 858

Query: 880 PNGNKADQAI 889
            + +K ++A+
Sbjct: 859 KDASKLEEAL 868


>gi|259501304|ref|ZP_05744206.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|259167274|gb|EEW51769.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335]
          Length = 906

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 516/903 (57%), Gaps = 73/903 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 36  SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 95

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 96  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 151

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 152 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 208

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 209 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 266

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 267 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 326

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 327 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 386

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 387 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 446

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  +  Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 447 A-VDKEEFDAEMRAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 495

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 496 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 538

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 539 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 597

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 598 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 657

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 658 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 712

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 713 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 772

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 773 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 831 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 888

Query: 879 GPN 881
           G N
Sbjct: 889 GKN 891


>gi|309805316|ref|ZP_07699367.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165392|gb|EFO67624.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 877

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDIDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           A +D   F+  ++ Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859

Query: 879 GPN 881
           G N
Sbjct: 860 GKN 862


>gi|110799076|ref|YP_696466.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168211405|ref|ZP_02637030.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|123148653|sp|Q0TPH4|SYA_CLOP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110673723|gb|ABG82710.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170710656|gb|EDT22838.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 879

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +TT 
Sbjct: 7   NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE   
Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   L  S  + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q  
Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L   +S + +  +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI 
Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +FN+ ++EQR RAR     +  +G       K+  S+      T+F GY  L        
Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------LNSKVIVLGNNEEFKSELKEGEEGFLLTDKTPFYAEMGGQVGDR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH
Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T
Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M+ ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IV
Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
           SES + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++  
Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
            ++   K KL    ED       ++N +  + +E   VD   L+ + D ++ K+ +GI++
Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L       K +++ + T++ L   N V   ++      + GGGGGGRP MAQ+GG N   
Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862

Query: 885 ADQAI 889
             +A+
Sbjct: 863 IAKAL 867


>gi|313891768|ref|ZP_07825373.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313119762|gb|EFR42949.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 869

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 314/897 (35%), Positives = 499/897 (55%), Gaps = 55/897 (6%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    +TT
Sbjct: 4   NDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHRITT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   +D+ 
Sbjct: 64  SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKMDKE 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T++ +D++A+  W K  G++ + I R+   DNFW + E GPCGP SEIFFDQGE  
Sbjct: 120 RLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQGESF 176

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            G  P +    +G+R++EIWNLVF QF++Q       L K +IDTG GLER+A V+Q+K 
Sbjct: 177 -GTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLVKKNIDTGAGLERLAAVMQQKK 235

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NN++ DLF  +I  + +++G  Y  + ++ V  +VI DH R+ + +I+DG+LP+NEGRGY
Sbjct: 236 NNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGRGY 295

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + +L+G  +  M  ++  +   M   YPEL + +  I++    E+ERF 
Sbjct: 296 VLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEERFQ 355

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+ G  LL  ++    K  I  L+G+  FKLYDT+G P ++  +I    G++ ID   
Sbjct: 356 STLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDKEG 414

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++ +Q+ RAR   + +                             +K +  D   L 
Sbjct: 415 FIISMNKQKERARNARVKI----------------------------SAKVLTPDTTKLD 446

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
            K        V + +  + + GE +  A  G+ + V+    PF+AE GGQ+GD G     
Sbjct: 447 AKNLTVKDEDVDTTIVMLGKNGEEIVSATDGEDLVVILKNNPFHAEGGGQMGDIGILRNS 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ + +K  +GI      +  G +     + + +D   R  L+ NH+ THLLH AL
Sbjct: 507 SGVFEVHNTKKLPDGIVYLIGTITEGKISVNDMVEVKVDRVRRAALAKNHTGTHLLHAAL 566

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG   +Q GS + PD LRFD T ++P+T+ ++  +E  VN+ I  +L + T+ +  E
Sbjct: 567 RQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILGSLTLTTKEVPLE 626

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY   VR+V +     G  S  LCGG+H  +TGE+    I+SES I 
Sbjct: 627 EARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESGIG 681

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQL 772
           +G+RRI A+TG  A   ++   + +++ A  LK  +  ++ +++++  + +K     ++L
Sbjct: 682 SGLRRIVALTGISAYEAMVNDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDIIKL 741

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            + + K +L+           ++F +      +  EL+ + D ++ K+  G  +L  +S 
Sbjct: 742 KNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSVSN 801

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            K   V +   E +    +   +    AK+   GGGGG+P +AQ+GG + +K + AI
Sbjct: 802 GKVNFVGMASKEAVEAGIHMGKVVSQVAKIC-NGGGGGKPTVAQAGGKDISKVEDAI 857


>gi|291530562|emb|CBK96147.1| alanyl-tRNA synthetase [Eubacterium siraeum 70/3]
          Length = 878

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 332/912 (36%), Positives = 507/912 (55%), Gaps = 57/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P    V
Sbjct: 4   TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  ++ 
Sbjct: 64  TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EA  +W    G+  D+II++   DNFW    +GPCGPCSEI FD+GE
Sbjct: 120 EDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFDRGE 178

Query: 182 CIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
              G      + GE  R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+Q+
Sbjct: 179 KY-GPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQD 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  +++++    V G+ Y  +    V+ RVI DH+RS++F++ DGI P+NEGR
Sbjct: 238 VDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+L    P +  +   +  E  +AYPEL + +  I++ +++E+E 
Sbjct: 298 GYVLRRLLRRAARHGRMLDVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEES 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           F KT+D+G+ +L   +  L  D+    IL+G+  FKL+DT+G P+D+ ++IL  R + GI
Sbjct: 358 FAKTVDKGMQILGEFIKELSADDTHKPILSGENLFKLHDTYGFPVDLTREILQERNI-GI 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + + EQ+++AR++    G G  E    +L      T F+GY      K +  D 
Sbjct: 417 DEERFFELMNEQKAKARSNQAFKG-GWDEATANALSGL--TTTFVGY------KSLTADS 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K+L                 A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD G 
Sbjct: 468 KIL-----------------AMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDCGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                  +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  HLL
Sbjct: 511 ITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLL 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT  
Sbjct: 571 QAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVTEE 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+SE
Sbjct: 631 LPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKIISE 685

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NVVGRVEEIWE 765
           +S+ +G+RRIEA+TG    S        + ++A  LK++          N++  +  +  
Sbjct: 686 TSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHTMQA 745

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           E  +L  I +  +++   E  +  ++  +   S ++S V    L+   D L+    S + 
Sbjct: 746 EIDRLNGIISMSQMKNVTEGAT--EVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFVA 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+S  K   + I   E +    NA  + +     + GG GGG+P  A +G  +  K 
Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVK-EIAAIAGGKGGGKPDTAMAGIADVTKI 862

Query: 886 DQAIAGVASFLK 897
           D+A+  +   +K
Sbjct: 863 DEALLALTDIVK 874


>gi|18310762|ref|NP_562696.1| alanyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|168218241|ref|ZP_02643866.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|20532247|sp|Q8XJH6|SYA_CLOPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18145443|dbj|BAB81486.1| alanine-tRNA ligase [Clostridium perfringens str. 13]
 gi|182379737|gb|EDT77216.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 879

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +TT 
Sbjct: 7   NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE   
Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   L  S  + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q  
Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L   +S + +  +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI 
Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +FN+ ++EQR RAR     +  +G       K+  S+      T+F GY  L        
Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH
Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T
Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M+ ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IV
Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
           SES + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++  
Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
            ++   K KL    ED       ++N +  + +E   VD   L+ + D ++ K+ +GI++
Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L       K +++ + T++ L   N V   ++      + GGGGGGRP MAQ+GG N   
Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862

Query: 885 ADQAI 889
             +A+
Sbjct: 863 IAKAL 867


>gi|293400450|ref|ZP_06644595.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305476|gb|EFE46720.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 893

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 349/912 (38%), Positives = 515/912 (56%), Gaps = 69/912 (7%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N++   IR  FL++F+K+GH + P +SLIP NDPTL++ N+G+   K  F G  KP  
Sbjct: 20  MKNLTGNQIRQLFLDYFKKHGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGTVKPEC 79

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT E 
Sbjct: 80  PRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEE 135

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ RLYITVY +DEEA+ +W    G+    I++  T DNFW + E GPCGP +EIF
Sbjct: 136 YIGFDKDRLYITVYIDDEEAYDIWTNEIGVDPSHILK--TADNFWQIGE-GPCGPDTEIF 192

Query: 177 FDQGECI-PGGLPGS----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           +D+GE   P GL         E +RYIE+WN VF QF+ +    +++   LP+ +IDTGM
Sbjct: 193 YDRGEAYDPEGLGEKLFFEEMENDRYIEVWNNVFSQFDAKEGVARKDYKELPQKNIDTGM 252

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  LI A EQ T M+YE   N +  RVI DH+R+ +F +A
Sbjct: 253 GLERLTCLVQNGETNFDTDLFLPLIHACEQYTSMRYEDAENKMAFRVIADHIRTVTFALA 312

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L ANEGRGYVLRR++RRA+ + R L      M  L+P +   M   YP + +    I
Sbjct: 313 DGALFANEGRGYVLRRVLRRAVRFGRKLKIEGAFMYKLVPVVYEIMKDFYPYIEEKIDYI 372

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ +++E+ERF  TL  G  LL  V+     +++L+G  AFKLYDT+G PL++  +I   
Sbjct: 373 EKLVKAEEERFHATLADGEKLLLDVMEKNKDNKLLDGVTAFKLYDTYGFPLELTCEIAEE 432

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D+  F++ +++QR RAR     + S +++     L      ++FIGYD      
Sbjct: 433 SGYQ-VDVQGFDEEMKKQRERARNAREDVESMSSQSA--DLMAFTQDSKFIGYD------ 483

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
               +R    Q             V A+ + G+ V +A+S +  +++ + T FYAE+GGQ
Sbjct: 484 ----ERTCDAQ-------------VIALFKDGKQV-DAISDEG-DIILNTTVFYAESGGQ 524

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G  +GD +  +I +  K      +H  ++E G L     L L +D + R  ++ NH
Sbjct: 525 IGDSGSFMGDALG-RIVNTVKAPHKQHLHKVVIEEGCLHVGSKLQLAVDNKKRDIITSNH 583

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  ++G+H+ Q GS ++ + LRFD TH + ++  +LK IE  VN  I+++ 
Sbjct: 584 SCTHLLQSALKKVVGNHIQQAGSFVSDEYLRFDFTHFEKVSVQQLKEIEQLVNRFISEHH 643

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV    M  E+A  SGA AL   KY D VRVV++     G  S   CGG HV++T EI +
Sbjct: 644 PVSKVEMPIEEAKQSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGI 698

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A      +++ L+ +A  LK+ S  NV  +VE++  E
Sbjct: 699 CKIISEESIGSGIRRITAKTGYSAYEEFAAEEKTLRHIADDLKMKSIVNVDTKVEQVLHE 758

Query: 767 YRKLQLIHAKRK---LQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKI 820
             +L+   A  +     L   +L  H++ + N    +I  +D  +   LK +   ++ + 
Sbjct: 759 NAQLKKELAALQSEMFTLKANEL-IHEVKECNGRHVLIKRMDGADANALKDIASTIKAQK 817

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL---DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +  I+ L  +  +K   V+ V   D L   D     DL +  A +L  G GGGR  +AQ+
Sbjct: 818 EHVIVFLASVCNDK---VVFVAGADKLAVADGIKCGDLVK-EAAMLCDGKGGGRADLAQA 873

Query: 878 GGPNGNKADQAI 889
           GG +  K D+A+
Sbjct: 874 GGKDVTKVDEAV 885


>gi|168207852|ref|ZP_02633857.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170660832|gb|EDT13515.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
          Length = 879

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +TT 
Sbjct: 7   NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE   
Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   L  S  + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q  
Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L   +S + +  +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI 
Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +FN+ ++EQR RAR     +  +G       K+  S+      T+F GY  L        
Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH
Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T
Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M+ ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IV
Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
           SES + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++  
Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
            ++   K KL    ED       ++N +  + +E   VD   L+ + D ++ K+ +GI++
Sbjct: 746 KEIAELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L       K +++ + T++ L   N V   ++      + GGGGGGRP MAQ+GG N   
Sbjct: 806 LAS-GNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862

Query: 885 ADQAI 889
             +A+
Sbjct: 863 IAKAL 867


>gi|168214257|ref|ZP_02639882.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714273|gb|EDT26455.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
          Length = 879

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/905 (37%), Positives = 519/905 (57%), Gaps = 64/905 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +TT 
Sbjct: 7   NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE   
Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   L  S  + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q  
Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L   +S + +  +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +DI 
Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +FN+ ++EQR RAR     +  +G       K+  S+      T+F GY  L        
Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V  +    E   E   G+   ++ D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEDGFLLTDKTPFYAEMGGQVGDR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH
Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T
Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M+ ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IV
Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
           SES + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++  
Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
            ++   K KL    ED       ++N +  + +E   VD   L+ + D ++ K+ +GI++
Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLSDKVRNKLNNGIVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L       K +++ + T++ L   N V   ++      + GGGGGGRP MAQ+GG N   
Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862

Query: 885 ADQAI 889
             +A+
Sbjct: 863 IAKAL 867


>gi|322385851|ref|ZP_08059494.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270136|gb|EFX53053.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 872

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 347/925 (37%), Positives = 505/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L K    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKKKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  +     +  ++TDVQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDAAGNVVAKVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAIDT 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILGSH +Q GS    + LRFD TH + +T  EL++IE 
Sbjct: 558 NRRLRVMKNHTATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LKV Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKVPQLKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+D+    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|257066429|ref|YP_003152685.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798309|gb|ACV28964.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 870

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 321/908 (35%), Positives = 511/908 (56%), Gaps = 58/908 (6%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R+ +L FF  + GH LL S  LIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRSKYLNFFGNEKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A++ LTKE ++ +
Sbjct: 66  SSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYEFLTKELEISK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             +++TV+ EDEEA+ +W    GL +++I+R    DNFW + E GPCGPCSEIF D+G  
Sbjct: 122 DDIWVTVFKEDEEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFVDRGAG 180

Query: 183 IP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                    PG +++ +R++E+WNLVF QF + ++     L   +IDTGMGLER+A VLQ
Sbjct: 181 RAIDENDNRPG-NDDSDRFMEVWNLVFTQFNKDSQGNYTPLAHPNIDTGMGLERIAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +K N +++D+   +I   E+++  KY+    + V+ RVI DH ++ +FL  DG+LP+NE 
Sbjct: 240 DKDNIFEVDVMAAIISEIEKLSNKKYKESKKDDVSIRVIADHAKAMTFLTCDGVLPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     + +++  +       Y EL   +  I+  +R E+E
Sbjct: 300 RGYVLRRLIRRAYRHGKLLGIEGEFLTNIVDKVIDTYKVEYDELDANREKIKSVIRDEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF KT+D+GL  L+ ++S +   K+++L+G  AFKLYDT+G PLD+ ++IL  + L  +D
Sbjct: 360 RFQKTIDQGLERLESLISKMEKIKNKVLDGKEAFKLYDTYGFPLDLTKEILEEKNL-DVD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +FN  ++ Q+  AR         + + I     +    T F+GYD L           
Sbjct: 419 EKTFNDEMQIQKQTAREARKKDAGWSLDNI---NTDGIAKTSFVGYDNL----------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        + + +  + ++   V     G    V+ D+T FYAE GG++ DTG  
Sbjct: 465 ------------DIKARILNLFKENSEVSSLSEGDNGIVISDKTSFYAEGGGEVADTGLI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + D  + ++ DVQK+ + I+ H+  V  G +         +D   R  +  NHSATHLL 
Sbjct: 513 LSDSFKARVIDVQKQKD-IYFHYIEVVEGAVFVGDDAQFKVDRNKRLAIQRNHSATHLLD 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG  V Q GS +  + LRFD +H++ +T  E+  +E+ VN  I +   V   I+
Sbjct: 572 QALRDVLGEDVKQAGSLVDENKLRFDFSHNRALTKEEIDKVEEIVNREIVKQELVTKEIV 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + +++   GA  L   KY D+VRVVS+     G +S  LCGG HV++T +I++  I  ES
Sbjct: 632 DYKESQKMGAIGLFEDKYKDKVRVVSM-----GDYSIELCGGCHVNNTSDILMFKIKQES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG++A  +L  +  KL  +A  L  +  N+  R++ + +E  KL+  +
Sbjct: 687 SVSAGVRRIEALTGKKAFEYLNDRANKLDQVAERLNTNTNNITNRIDSLEKEIEKLKSEN 746

Query: 775 AKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           ++ K   N  D+         +I  +N +          EL+   + ++  I + II+  
Sbjct: 747 SRLK-STNSSDIVSELKEDVKEIKGINLLVKKFENASMDELRDYENRIKSSIDNLIIVFA 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S   K    + V + L D++NA  + R  A++  GG GGG+ + AQ+GG + +K  +A
Sbjct: 806 SVS--DKIVFTVSVDDKLTDKYNAGKIVRQIAQIT-GGNGGGKKNFAQAGGKDISKLKEA 862

Query: 889 IAGVASFL 896
           +  V+  +
Sbjct: 863 LEKVSEII 870


>gi|326693841|ref|ZP_08230846.1| alanyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 352/940 (37%), Positives = 514/940 (54%), Gaps = 100/940 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEVRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE  I  AW+LLT    + LD+
Sbjct: 67  QKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEVIPWAWELLTSPEWYGLDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY+TVY +D+EA K+W++ + L A  I  +   DNFW + E GP GP SEIFFD+G  
Sbjct: 123 ERLYVTVYPKDQEAKKIWEEKTDLPAGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRGPA 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMGLE 231
                   P   PG   E ERY+EIWN+VF QF       +  +   LP  +IDTGMGLE
Sbjct: 180 FQDLPDDDPEMYPGG--ENERYLEIWNIVFSQFNHLPGMTDNSQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG----NNIVNHRVIVDHLRSSSFLI 286
           R+ +V Q    N+D DLF  +IQA+E ++   KY+G    ++  + +VI DH+R+ +F I
Sbjct: 238 RVVSVFQNGRTNFDTDLFLPIIQATEALSPNFKYDGTKDSDSNTSFKVIADHIRAITFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG +P+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+++    
Sbjct: 298 SDGAMPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTQLVPIVGEIMQSYYPEVLENAAR 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           I++T+ +E++RF  TL  GL LLD V++     GK +I   D AFKL DT+G PL++ Q+
Sbjct: 358 IQKTVAAEEKRFNATLTGGLALLDDVIAAAKADGKTQISGAD-AFKLSDTYGFPLELTQE 416

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462
                GL  +D+  FN+AL+ QR+RARA      S G    +   LK    A++++G+  
Sbjct: 417 QAAEAGLT-VDVDGFNEALQAQRARARAARSNDKSMGVQNAVLTDLKV---ASEYVGWS- 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVEEAVSGQKVEVVFDQT 518
                               ++    + +V  I Q  +    ++++AV+G++ ++VFD+T
Sbjct: 472 --------------------EIAVDSAEVVAIIGQDADGIDALLDQAVAGEQRQLVFDKT 511

Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           PFYAE GGQ+ D G  +   GD +  ++ DVQK   G  VH   V   I   E ++ L +
Sbjct: 512 PFYAEMGGQVADFGTVLNKQGD-VVAEVIDVQKAPNGQHVHTVNVLADITLGE-NVDLRV 569

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D      +S NH+ATH+L  AL  +LG  V Q GS + PD LRFD T+  P+++A+L  I
Sbjct: 570 DMARHIAVSKNHTATHMLDQALRNVLGGDVHQAGSLVEPDYLRFDFTNEGPVSAADLDRI 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN  IA+N P+     + E A   GA A+ G KY D VRVVS+     G  +    G
Sbjct: 630 EAMVNAEIAKNAPISWMETDIETAQQMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDG 684

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754
           GTH  ST E+ L  IVSES I AG+RRIEA+TG  A +    ++  LK++A+ +K  +  
Sbjct: 685 GTHAQSTAELGLFKIVSESGIGAGVRRIEAVTGLEALALYKAEENALKAVAAQVKAQKIT 744

Query: 755 NVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
               +V ++  E +  Q  L   + KL     D   + +   N  ++I++++      S 
Sbjct: 745 EAPAKVADLQAELKATQRTLESVEAKLANAAADEVFNDVKTSNGHTYIVAQLPV----SG 800

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--- 869
           MD L++   +         K    S ++V+  D+  + N +  A   A   G   G    
Sbjct: 801 MDGLRQVADNW--------KATYPSEVLVLAADIDGKVNLIVAASPEANAAGIKAGDLIK 852

Query: 870 -----------GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                      GRP MAQ+GG N      A A VA FL +
Sbjct: 853 AITPRVGGGGGGRPDMAQAGGKNPAGIPDAFAAVADFLAQ 892


>gi|123965286|ref|YP_001010367.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|205830181|sp|A2BTZ9|SYA_PROM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123199652|gb|ABM71260.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 886

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 330/908 (36%), Positives = 515/908 (56%), Gaps = 78/908 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+F++   H ++PSSSLIP +DPT+M T +GM+PFK +F G         ++ QK
Sbjct: 15  IRKAFLDFYESKSHLIIPSSSLIP-DDPTVMLTIAGMLPFKPVFLGLRNRPSPRASSSQK 73

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L+T  + L    + 
Sbjct: 74  CLRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQWAWELITDIYHLKPENII 129

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I+V+ ED E+ K+W+   G+  ++IIR+   DNFWS   TGPCGPCSE+++D       G
Sbjct: 130 ISVFHEDHESEKIWRDNIGIIPERIIRLDEKDNFWSSGATGPCGPCSELYYDFNP--EKG 187

Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           L     E+G+R+IE +NLVFMQ+ + +      L   +IDTGMGLERMA +LQ+KTNNY+
Sbjct: 188 LKNIDLEDGDRFIEFYNLVFMQYNRDSNGMLSDLKFKNIDTGMGLERMAQILQKKTNNYE 247

Query: 246 IDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +++ +  +  + Y   +    ++ +++ DH R+   LI+DG++ +N GRGY+LR
Sbjct: 248 TDLILPIVKEAALIANIDYFSSDDRTKISLKILGDHTRAIIHLISDGVVASNLGRGYILR 307

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLL   +  +  L     + M + YP+L   K  I   +  E++RF +TL
Sbjct: 308 RLLRRMIRHGRLLAIKDDFLSRLASIGISLMQNTYPDLKNNKERILREINIEEKRFLETL 367

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           DRG  LL+ ++     +++++G  AF+LYDT+G PL++ ++IL  + +  +D+  F + +
Sbjct: 368 DRGEKLLNDLIR--SGEKLISGTKAFELYDTYGFPLELTKEILEEKNI-NVDLEGFTREM 424

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLK-------EKYGATQFIGYDLLRGSKFMKEDRKV 475
           E Q+ RA+A S        +KI  +LK       + +  T F GYD L            
Sbjct: 425 EAQKERAKAAS--------QKIDLTLKGSIEREIDLFDQTIFEGYDSLNS---------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                          IVK I  +   VE+A+ GQ V+++ DQT FY E+GGQ+GDTG   
Sbjct: 467 -------------QGIVKGIFFESNSVEKAIQGQTVQIILDQTSFYGESGGQVGDTGTIS 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +   + I  V +K + IF+H   V +G +     +   +D  NR +   NH+ATHLL  
Sbjct: 514 RNDAEIDIDKVIRK-KNIFLHCGTVRKGEICRNQLVETRVDKFNRAKAESNHTATHLLQS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+   VSQ GS +  + LRFD    +P++  ++  +E  VN  I++N P+  + M+
Sbjct: 573 ALKLIIDKSVSQRGSLVGFNKLRFDFNSPQPLSKEQISQVESLVNSWISENHPIEVKNMD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           ++DA+ +GA A+ G KY D VRVV V     GV S  LCGGTHV +T E+    I+SE  
Sbjct: 633 KDDALKAGALAMFGEKYGDIVRVVDVP----GV-SMELCGGTHVQTTSEVGSFKIISEIG 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEA++GQ    +   +DE +  L+  LK     +  R++ +  E     L++ 
Sbjct: 688 ISSGIRRIEALSGQLVLDYFKERDETVNKLSDLLKARPSQLFERIDSLQTE-----LVNK 742

Query: 776 KRKLQLNVEDL----------SCHKIADVNFMSHIISEVDSKELKS-VMDALQKKIQSGI 824
            +++Q   +++          S  KI   + + + I  +D   L+S  +D   K     +
Sbjct: 743 NKEIQRMKDEIAYFKYSSLSSSAKKIGSFSLIINQIDGLDGSSLQSAALDLTSKLGDKSV 802

Query: 825 IMLVGISKEKKASVLIVVT--EDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++L GI   +K  +L VV+  +DL+ R  +A  L    +++   GGGGG+P+ AQ+G  +
Sbjct: 803 VILGGIPDTEKKKLLFVVSFGDDLVRRGMHAGKLINEISRIC-SGGGGGKPNFAQAGAKD 861

Query: 882 GNKADQAI 889
            +K + A+
Sbjct: 862 IDKLNDAL 869


>gi|329919606|ref|ZP_08276595.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|328937411|gb|EGG33833.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 877

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 343/903 (37%), Positives = 516/903 (57%), Gaps = 73/903 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD 
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G  
Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG LP
Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ ++
Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL
Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F+  ++ Q+ RAR     L S G+ +    ++K++   + F  + L       
Sbjct: 418 V-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +ED   L                  IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ 
Sbjct: 467 QEDHARLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        L   + DVQ       +H   +   + + E   VL +D Q RR L  NH
Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +
Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I +
Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762
           L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K +     Q  VV   + 
Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           + EE + ++ + ++   Q    DL+   I D+N +  I   VD     +L+ + D  + +
Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+G
Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859

Query: 879 GPN 881
           G N
Sbjct: 860 GKN 862


>gi|205830259|sp|A2CDK7|SYA_PROM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 340/924 (36%), Positives = 519/924 (56%), Gaps = 82/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 18  SEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRA-TS 75

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ +
Sbjct: 76  SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNPK 131

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    +
Sbjct: 132 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPDL 191

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   NN
Sbjct: 192 -GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPNN 250

Query: 244 YDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ D+   LI+ +  + G+ Y+        + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 251 YETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGYI 310

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF +
Sbjct: 311 MRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFLE 370

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F Q
Sbjct: 371 TLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFEQ 427

Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           A+++QR RA+A ++ +     G  E++   L+    AT+F GY +L              
Sbjct: 428 AMDQQRQRAKAAAVSIDLTLQGAIEQMAAELE----ATRFKGYQVL-------------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---- 533
           ++P           V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G     
Sbjct: 470 EQP---------CCVLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGE 520

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            + G+G+ + + DV +    +FVH   +ERG L     +   +D   RR+   NH+ATHL
Sbjct: 521 GSGGNGVIVAVDDVSRH-RNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHL 579

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++ S + Q GS +  D LRFD   S+ +T+ EL+ IE  +N  I ++  ++  
Sbjct: 580 LQAALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVE 639

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+
Sbjct: 640 EMSIQEAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVA 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ESS+ AGIRRIEA+ G    ++L  +D  +K L    K     ++ RV  + EE +  Q 
Sbjct: 695 ESSVAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQK 754

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            L  A+ +L +        +   V     +++ +D  E   + +A Q     G++  +G 
Sbjct: 755 ALTAARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQ-----GLLDQLG- 808

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHM 874
                 +V++    D  D    + +A    +V+  G   G                RP++
Sbjct: 809 ---DATAVVLGGLPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGGGGRPNL 865

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ+GG +G   D A+      LK+
Sbjct: 866 AQAGGRDGAALDGALEAAKVELKQ 889


>gi|315037651|ref|YP_004031219.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312275784|gb|ADQ58424.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 879

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 351/933 (37%), Positives = 528/933 (56%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++FK+W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +E Q+ RAR     L S G  +    ++K+K              S 
Sbjct: 415 GLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 FERD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G     DG +  ++ DVQ       +H       VE+G        +L +D + R 
Sbjct: 507 VADHGNIYSQDGELVAKVIDVQHAPNDQNLHFVDLILPVEKG-----KEYILKLDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+K++E+ VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  +   L ++   +K ++  N++ ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDNIQEDVKATKPDNIIDKI 736

Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL--NVE---DLSC-HKIADVNFMSHIISEVDS 806
           + +  +    Q         I+  +  Q+  NV+   DL+    IADVN M+        
Sbjct: 737 DSLESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L   + + KA+++I + +  LD+   A DL +++A +  G
Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG      + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKKPEGLNDAIKAVIDEISK 878


>gi|227484973|ref|ZP_03915289.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237128|gb|EEI87143.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 872

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 327/909 (35%), Positives = 516/909 (56%), Gaps = 56/909 (6%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R ++LEFF  +  H LL S  L P +D TL+  N+GM P K  FTG+ K      T
Sbjct: 6   MNELRKSYLEFFGNEKNHTLLKSFPLTPIDDDTLLLINAGMAPLKKYFTGELKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVR G    D++ VG+T RH TFFEMLGNFSFG YFK  AI  A++ LTK+ ++++
Sbjct: 66  SSQRCVRTG----DIERVGKTERHGTFFEMLGNFSFGDYFKREAINWAFEFLTKKLEINK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L++TVY +D+EA+ +W    G+ A++I+R    DNFW + E GPCGPCSEI+ D+G  
Sbjct: 122 DDLWVTVYYDDDEAYNIWHDEIGMPAERILRQGKEDNFWEL-EVGPCGPCSEIYVDRGPE 180

Query: 183 IP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                    PG ++  +R++E+WNLVF QF + N+     L   +IDTGMGLER+A +LQ
Sbjct: 181 RAVDENDNQPG-NDNSDRFMEVWNLVFTQFNKDNQGNYTNLSHPNIDTGMGLERIAMILQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEG 296
            K N ++ID+ K +I   E+++G  Y+ N +  V+ RVI DH ++ +FL++DG++P+NE 
Sbjct: 240 GKDNIFEIDVMKEIISEIEKLSGKTYKANKVDDVSIRVIADHAKAMTFLVSDGVIPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG   P +  ++  +       Y EL+     I + +  E++
Sbjct: 300 RGYVLRRLIRRAYRHGKLLGIEGPFLNKIVDKVIETYKVEYDELVDNMDNIHKVISDEED 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF KT+++GL  LD +++ + K+  +IL+G  AFKLYDT+G PLD+ ++IL  + L  +D
Sbjct: 360 RFQKTINQGLEKLDSLIADMEKNNIKILDGSEAFKLYDTYGFPLDLTKEILEEKNL-DVD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +E QR+ AR           + +     EK   T F GY+             
Sbjct: 419 DEKFEEEMENQRNLARNARKTDNKHKHDNLLADHLEK---TDFQGYE------------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                   DL   +     AI   GE      +  K  +V D+T FY E GG++ DTG  
Sbjct: 463 ------NFDLEGKLL----AIFVDGEENSSIKAPNKGIIVSDKTSFYPEGGGEVADTGFI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ DVQKK + IF +  + E   +R  ++    ID + R  +  NHSATHLL 
Sbjct: 513 KTSNACAKVVDVQKKNDIIFHYVEVTEGEFVRGSVAR-FVIDLERRLDIQRNHSATHLLD 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG +++Q GS +  D LRFD T++K +++ EL+ IE+ +N  I + LPV    M
Sbjct: 572 KALKNVLGQNINQAGSLVDEDKLRFDFTYNKALSNEELRKIEEEINAKIREQLPVKKEYM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + +   GA AL   KY D VRVVS+     G +S  LCGG HV++T E+++  I SES
Sbjct: 632 DYKKSEELGAVALFEDKYKDIVRVVSM-----GDYSIELCGGCHVNNTAEVLMFKIKSES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQL 772
           S  AG+RRIEAITG+     L+ ++  +K +A+ L  +  N+  ++  +  E   +  ++
Sbjct: 687 SAAAGVRRIEAITGKAVFEELISKENTIKEIANDLDANINNIKSKINSLKSEIASKDSEI 746

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVG 829
              K +   +V      KI  VN ++ +I++ D+    EL+ + +  + +  + +I+   
Sbjct: 747 KRLKSQSNKDVYSELKSKIEKVNGVNLLIAKFDNASVDELRELENKFKNEYDNLVIIFAT 806

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +S   K    + V ++L D++NA  + R  A++  GG GGG+ + AQ+GG + +  D+A+
Sbjct: 807 VS--DKIIFTVSVDDNLTDKYNAGKIVREIAQIT-GGNGGGKKNFAQAGGSDISALDKAL 863

Query: 890 AGVASFLKK 898
                 +K+
Sbjct: 864 KRAYEIIKE 872


>gi|307701921|ref|ZP_07638930.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616736|gb|EFN95924.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 872

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 349/926 (37%), Positives = 507/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILGSH +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|325956136|ref|YP_004286746.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325332701|gb|ADZ06609.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327182944|gb|AEA31391.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 879

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 351/933 (37%), Positives = 527/933 (56%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++FK+W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +E Q+ RAR     L S G  +    ++K+K              S 
Sbjct: 415 GLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 FERD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G     DG +  ++ DVQ       +H       VE+G        +L +D + R 
Sbjct: 507 VADHGNIYSQDGELVAKVIDVQHAPNDQNLHFVDLILPVEKG-----KEYILKLDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+K++E+ VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K ++  N++ ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDDIQEDVKATKPDNIIDKI 736

Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL--NVE---DLSC-HKIADVNFMSHIISEVDS 806
           + +  +    Q         I+  +  Q+  NV+   DL+    IADVN M+        
Sbjct: 737 DSLESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L   + + KA+++I + +  LD+   A DL +++A +  G
Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG      + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKKPEGLNDAIKAVIDEISK 878


>gi|298735738|ref|YP_003728263.1| alanyl-tRNA synthetase [Helicobacter pylori B8]
 gi|298354927|emb|CBI65799.1| alanyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 847

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 336/888 (37%), Positives = 494/888 (55%), Gaps = 61/888 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y    F+GY+               C   P
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTE------------C---P 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
             +     S  K I        EA   Q+V V+ ++TPFYAE GG +GD G    D    
Sbjct: 458 AKVLGFFDSDFKEIT-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 ALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A  
Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVSFKEV-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q    K  + +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
              DL   KI  V+ +  ++ + D KE+   +D L+ K +  + M+    KE +   L  
Sbjct: 738 ---DLPIEKIHGVSLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERITLAC 789

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             ++   + NA   A   A++L GG GGGR   A +GG +  K   A+
Sbjct: 790 GVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834


>gi|312977883|ref|ZP_07789629.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|310895190|gb|EFQ44258.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 879

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 349/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T  K  G N       ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +  Q+ RAR     L S G  +    ++K+K              S 
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G     DG +  ++TDVQ       +H       VE+G        VL +D + R 
Sbjct: 507 VADHGDIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K ++  N+V ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736

Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806
           + +  +    Q         I+A +  Q+        DL+     ADVN M+        
Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L       KA+++I + +  LD+   A +L +++A +  G
Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALDQKALDKGLKAGNLIKIAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG N    + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878


>gi|66819737|ref|XP_643527.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74860734|sp|Q86H43|SYAM_DICDI RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|60471622|gb|EAL69578.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 932

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 345/935 (36%), Positives = 498/935 (53%), Gaps = 117/935 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++   +R TFL +F+KNGH+ LPS SL+P ND +L+FTN+GMV FKN FTG E+  Y+ V
Sbjct: 28  TSTKEVRETFLNYFEKNGHKRLPSGSLLPYNDNSLLFTNAGMVQFKNQFTGNEESKYKKV 87

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY  FK  +IQ AWDLLTKE+ 
Sbjct: 88  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWDLLTKEYG 147

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFD 178
           L + RL I+V + DEE+ ++W+   GL  DKI+     DNFWSM +  GPCGPCSEIF+D
Sbjct: 148 LPKERLAISVLEGDEESAEIWRNQIGLPNDKIMYKGREDNFWSMGDGPGPCGPCSEIFWD 207

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMSIDTGMGLERMA 234
            G+ +         +GERY+EIWNLVFMQ+ +  K+   +    LP   +DTGMGLERMA
Sbjct: 208 HGKEV---------DGERYLEIWNLVFMQYNKSGKEGDEMPVDKLPIPCVDTGMGLERMA 258

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVDHLRSSSF 284
           +VLQ K  NYDIDLF++LI + +++  M                   +RVI DHLRS SF
Sbjct: 259 SVLQGKFTNYDIDLFQNLINSFKEIVTMDVGRAQFQLQQDPQRVETAYRVIADHLRSISF 318

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI+DG++P N GRGYVLR+I+RRA+ Y ++LG+  P +  L P L  EMG  YP+LI+  
Sbjct: 319 LISDGVIPFNIGRGYVLRKIIRRALSYGKILGFNGPFLSTLFPLLEREMGDIYPQLIERS 378

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I   + +E+  F   + RG+  L+  +    +   LN +  F LY+T+GLPL++ Q +
Sbjct: 379 NEIRNVILNEEGTFYNAIQRGIPYLEEFV----QQNKLNEESLFLLYNTYGLPLEMSQ-V 433

Query: 405 LCARGLAGIDIISFNQALEEQRSRAR----------AHSLGLGSGTTEKIWFSLKEKYGA 454
              +    ID+   N+ ++E R ++R            +    +   EK + S K     
Sbjct: 434 KAKQNNIEIDMDKVNKLIDETREQSRLTWNTSSSSSDQTTQQTTQLPEKTFLSWKSDNIK 493

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
            +FIGY+               C      + N  S ++++                V + 
Sbjct: 494 PKFIGYN--------------GC------VENDNSKVLRSHFDN--------DSHLVYLS 525

Query: 515 FDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGI------ 564
            D+TPFY  +GGQ+GD G  I    G  +   I  ++    G+ +   +VE         
Sbjct: 526 LDETPFYGTSGGQVGDVGELINVSSGKNVYRVINTIKPYEGGLVL---VVEWDPSQQLAS 582

Query: 565 -----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L+ +  L   +D   R Q++++HSATHLLH AL  ++G  V Q GS +  + LRF
Sbjct: 583 QVYQDLKQDSLLNCRVDRSIRNQVAVHHSATHLLHAALRNVIGKSVVQAGSLVGSESLRF 642

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678
           D TH + +T  +++ IE  VND IA+++ + T  +  E A   S    L   KY++ VRV
Sbjct: 643 DFTHGQKLTPNQIEQIEQWVNDAIAKDIALNTDEIPYEQASKNSDTLQLFSEKYSELVRV 702

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           VS+        S  LCGGTHV  +  I    I+SESS+ AG RRIEA+ G  A +     
Sbjct: 703 VSIP-----GFSKELCGGTHVERSSSIHQFKIISESSVAAGTRRIEAVAGLAATNFFKNH 757

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            + +  L++       ++   +    + + +L   ++K++ ++    L   +++ VN+  
Sbjct: 758 YQLVHQLSN-------SINSPIVNFQQSFERLVNTNSKQEKEIFDLKLKIAQLSSVNYNG 810

Query: 799 ---------------HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                          HII   D K    V +   K+  S  I L  ISK  K    ++ +
Sbjct: 811 QYKSDNGGEMIPLSLHIIDCEDKKAFTKVTENFAKEFSSSPIQLT-ISKGGKVLCQLLSS 869

Query: 844 EDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQS 877
                   + D + +   K +G G GGG   MA +
Sbjct: 870 SSSSSSSLSADTVLKQLFKSIGMGKGGGNKLMANA 904


>gi|260881197|ref|ZP_05403859.2| alanine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849786|gb|EEX69793.1| alanine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 871

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 343/910 (37%), Positives = 524/910 (57%), Gaps = 63/910 (6%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L+FF +K GH  LPS SLIP +DPTL+   +GM P K  FTG+ KP    VTT
Sbjct: 4   NELREAYLQFFSEKKGHLRLPSFSLIPQDDPTLLLIGAGMAPLKPFFTGKMKPPRTRVTT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK  AI  AW+ LT+  +L + 
Sbjct: 64  SQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKGEAIPWAWEFLTEVIELPKD 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TVY +D EA ++WK   G   D I+++   DNFW +   GPCGP SEI+ D GE  
Sbjct: 120 KLWVTVYPDDTEAIEIWKSQPGFPQDHIVKM--EDNFWEIG-PGPCGPDSEIYIDLGEER 176

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   + +RY+EIWNLVF Q+++Q       L   +IDTG GLER+A+V+Q K 
Sbjct: 177 GCGSPTCAVGCDCDRYLEIWNLVFTQYDRQEDGSYKNLAHKNIDTGCGLERLASVVQNKK 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N++ DL   +I+ + +V G++Y  +    ++ +VI DH RS + +I DGILP+NEGRGY
Sbjct: 237 TNFETDLLYPIIEYAAKVAGVEYGKDEKTDISLKVIADHARSMAVMIMDGILPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCT--EMGSAYPELIQAKLLIEETLRSEDER 357
           VLRRI+RRA+ + R+LG     +   + A+       S + ELI     I++ +  E++R
Sbjct: 297 VLRRILRRAIRHGRMLGIKGKFLEGAVDAVVEIYRDASDFGELIAKHDYIKKVISIEEDR 356

Query: 358 FGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F  TL++G+ LLD  +  L   GKDE L G+V F+LYDT G P ++ ++IL   GL  +D
Sbjct: 357 FAATLNQGMELLDAEIKSLKADGKDE-LPGEVGFRLYDTFGFPWELTEEILHENGL-DLD 414

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++A++EQR RAR+               +  ++       G D+ +    +K D +
Sbjct: 415 KEGFDKAMDEQRERARSAR-------------AENQRVAVPDLSGIDVSK----LKVDPE 457

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
               K            V AI + G++V+E   G++  ++ D+TPFYAE GGQ+GD G  
Sbjct: 458 AKEAK------------VVAIWKDGKLVDEITDGEEAGIILDKTPFYAEGGGQVGDEGLL 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +G+  R++ T+ +K  +G   H + VE G L+   ++ + +D + +   + NH+ATHLL 
Sbjct: 506 LGEFGRIKATNAKKLPDGTVYHVSYVEEGQLKVGETVKIEVDQEKKLASARNHTATHLLQ 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G  V+Q GS +TPD LRFD T+ +P+T+ +L  +E  VN +I +   V    M
Sbjct: 566 AALKKVVGDQVNQAGSSVTPDRLRFDFTNFEPVTAQQLADVEALVNKVILKGQDVEISHM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  +GA AL   KY D VRVV V        S  LC G+HV + G+I +  IV E+
Sbjct: 626 SLDEAKKAGAMALFSEKYGDVVRVVRVPG-----FSMELCAGSHVKNVGQIGMFKIVGET 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KL 770
            I +G+RRIEAITG+ A  +   +   L+  A+ LK ++ +V   VE++  E +    KL
Sbjct: 681 GIASGVRRIEAITGKAALDYANEKLATLQKAAALLKANEDDVPAAVEKLQAEGKEMAGKL 740

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIML 827
             + A ++ + + + L    + D+N +S I  + + +    L+ V D    K+ SG+++L
Sbjct: 741 AEVAAMQE-KADAQQL-IAGVKDINGVSVITGKANVENMDSLRDVADLTLDKLGSGVVVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G + + K ++++  ++D + R          A  + GGGGGGRP MAQ+GG       Q
Sbjct: 799 -GCANDGKVNLVVKASKDAVKRGIHAGKIIKEAAAVVGGGGGGRPDMAQAGGKKAEALPQ 857

Query: 888 AIAGVASFLK 897
           A    A+ ++
Sbjct: 858 AFEKAAAVIE 867


>gi|124024525|ref|YP_001018832.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|123964811|gb|ABM79567.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str.
           MIT 9303]
          Length = 930

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/924 (36%), Positives = 519/924 (56%), Gaps = 82/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 56  SEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRA-TS 113

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ +
Sbjct: 114 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNPK 169

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    +
Sbjct: 170 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPDL 229

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   NN
Sbjct: 230 -GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPNN 288

Query: 244 YDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ D+   LI+ +  + G+ Y+        + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 289 YETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGYI 348

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF +
Sbjct: 349 MRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFLE 408

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F Q
Sbjct: 409 TLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFEQ 465

Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           A+++QR RA+A ++ +     G  E++   L+    AT+F GY +L              
Sbjct: 466 AMDQQRQRAKAAAVSIDLTLQGAIEQMAAELE----ATRFKGYQVL-------------- 507

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---- 533
           ++P           V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G     
Sbjct: 508 EQP---------CCVLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGE 558

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            + G+G+ + + DV +    +FVH   +ERG L     +   +D   RR+   NH+ATHL
Sbjct: 559 GSGGNGVIVAVDDVSRH-RNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHL 617

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++ S + Q GS +  D LRFD   S+ +T+ EL+ IE  +N  I ++  ++  
Sbjct: 618 LQAALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVE 677

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+
Sbjct: 678 EMSIQEAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVA 732

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ESS+ AGIRRIEA+ G    ++L  +D  +K L    K     ++ RV  + EE +  Q 
Sbjct: 733 ESSVAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQK 792

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            L  A+ +L +        +   V     +++ +D  E   + +A Q     G++  +G 
Sbjct: 793 ALTAARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQ-----GLLDQLG- 846

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHM 874
                 +V++    D  D    + +A    +V+  G   G                RP++
Sbjct: 847 ---DATAVVLGGLPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGGGGRPNL 903

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ+GG +G   D A+      LK+
Sbjct: 904 AQAGGRDGAALDGALEAAKVELKQ 927


>gi|256844557|ref|ZP_05550043.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256613635|gb|EEU18838.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
          Length = 879

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++  +   KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +  Q+ RAR     L S G  +    ++K+K              S 
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G        L  ++TDVQ       +H       VE+G        VL +D + R 
Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K ++  N+V ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736

Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806
           + +  +    Q         I+A +  Q+        DL+     ADVN M+        
Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L       KA+++I + +  LD+   A +L +++A +  G
Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKALKAGNLIKIAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG N    + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878


>gi|295692276|ref|YP_003600886.1| alanyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295030382|emb|CBL49861.1| Alanyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 879

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/933 (37%), Positives = 517/933 (55%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T  K  G N       ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +  Q+ RAR     L S G  +    ++K+K              S 
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G        L  ++TDVQ       +H       VE+G        VL +D + R 
Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K ++  N+V ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736

Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806
           + +  +    Q         I+A +  Q+        DL+     ADVN M+        
Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L       KA+++I + +  LD+   A +L +++A +  G
Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKGLKAGNLIKIAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG N    + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878


>gi|255534656|ref|YP_003095027.1| alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340852|gb|ACU06965.1| Alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 893

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 339/932 (36%), Positives = 507/932 (54%), Gaps = 101/932 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL++FQ  GH ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +   QK
Sbjct: 6   IRQQFLDYFQSKGHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKDPKAPRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFKE AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKEEAIGFAWELLTEVYKIPKEDLY 125

Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV++         D++A+  WKK   +   +II     DNFW M E+GPCGPCSEI  D
Sbjct: 126 VTVFEGDSVEDLARDQDAYNFWKK--HIDEGRIINGNKKDNFWEMGESGPCGPCSEIHVD 183

Query: 179 QGECIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                  G+  +    + +  + +EIWNLVFM+F ++       LP   +DTGMG ER+ 
Sbjct: 184 LRTAEEKGMVSALDLVNNDHPQVVEIWNLVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGI 290
             LQ KT+NYD D+F  LIQ  E+++G++Y G       +  RV+VDH+R+ +F IADG 
Sbjct: 244 MALQGKTSNYDTDVFTPLIQKVEEISGLRYTGILTDEKDIAIRVVVDHIRAVAFAIADGQ 303

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N G GYV+RRI+RRA+ YA R LG  E  +  L+  L TEMGS + EL + + L+ E
Sbjct: 304 LPSNGGAGYVIRRILRRAISYAYRFLGMKEAFLFELVGVLQTEMGSYFAELSRQQKLVTE 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSH-LGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++ E+  F KT++ GL  +D V++  + K+E  L G   F+LYDT+G P D+ + I   
Sbjct: 364 VIKEEEISFLKTIELGLKRIDLVINDTISKNEKTLPGAAVFELYDTYGFPADLSRIIAEE 423

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465
           + L  ID   FN+ + +Q+ R++  S        +K+  W  L+EK    QF+GYD    
Sbjct: 424 QQLT-IDEAGFNEEMAKQKQRSKKSS-------AQKVYDWVILEEK--EQQFVGYDDTET 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
             ++   RKV                            E   G+  ++V  ++PFY E G
Sbjct: 474 ETYITRYRKV----------------------------ENKDGEYYQIVLSKSPFYPEGG 505

Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH------AIVERGILRTEMSLVLT---- 574
           GQ+GD G  +    +   I   QK  + +   +       ++E    R E +L+++    
Sbjct: 506 GQVGDHGILVPSYAKNFNIVSPQKFLDQLASENNSDRPSEVIEVLDTRKENNLIISLIKE 565

Query: 575 ------------IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                       ++   RR    NHS THLLH AL  +LG+HV Q GS + P+ LRFD +
Sbjct: 566 MPKDAGAVFYAKVNRDERRNTQANHSVTHLLHEALREVLGTHVEQKGSFVGPEYLRFDFS 625

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           H   +T  ELK +E+ VN  I +N+ +   R +   +A+  GA AL G KY D VR++  
Sbjct: 626 HFAKLTDEELKLVEEKVNTKIKENISLEEFRNIPISEAMEKGAMALFGEKYGDNVRMIQF 685

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   S  LCGGTHV +T EI    I SESS  AGIRRIEAI G +A ++    + +
Sbjct: 686 G------TSRELCGGTHVRNTAEIGFFKIQSESSTAAGIRRIEAIAGDQATAYFNNLESQ 739

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSCH----KIADVNF 796
            K +++ LK    ++   VE++ EE   L+  I A +K +   E  +      + A    
Sbjct: 740 FKEISALLKTK--DISKTVEKLLEENAALKSEIEAFKKEKAKAETGNWKNDFTESAGKKL 797

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +S +DS  +K ++  L+K++   +I+++    + K  + + V+ DL  +++A ++ 
Sbjct: 798 LVKKVS-LDSASVKDIVFQLKKEVAGSVIIIIS-DADGKPMITVGVSADLETQYHAGNIV 855

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +  AK + GGGGG  P  A +GG N    D+A
Sbjct: 856 KELAKEIQGGGGGN-PGFATAGGKNLAGIDEA 886


>gi|307564458|ref|ZP_07626999.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346818|gb|EFN92114.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 884

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 332/933 (35%), Positives = 494/933 (52%), Gaps = 90/933 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  T 
Sbjct: 3   ANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKSPEPRRRTD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L ++
Sbjct: 63  SQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLSEK 122

Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            +Y+TV++         D+EA K W K   L  D II    +DNFW M +TGPCGPC+EI
Sbjct: 123 DIYVTVFEGSKDENIPRDDEAAKYWSK--HLPKDHIINGNKHDNFWEMGDTGPCGPCTEI 180

Query: 176 FFDQGECIP-GGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
             D        G+ G    +++  + IEIWN+VFMQF +++      L    IDTGMG E
Sbjct: 181 HIDSRPLDERNGVLGRDLVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------------EGNNI-VNHRVIV 276
           R+  +LQ K +NYD D+F+ +I+  E ++  KY              E   I V  RVI 
Sbjct: 241 RLVRMLQGKHSNYDTDIFQPIIKRIEALSNYKYGFTSPTGKDGECLTEQEKIDVAMRVIA 300

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DHLR+ +F IADG LP+N   GYV+RRI+RR + YA   L   E  M  LLP L +EMG+
Sbjct: 301 DHLRAVAFSIADGQLPSNAKAGYVIRRILRRGVRYAYTFLNQREAFMYKLLPTLVSEMGA 360

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDT 393
           AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+L+DT
Sbjct: 361 AYPELSAQEELIGRVIKEEEDSFLRTLEKGITLLNGAMDELKAHGQSCLDGKEAFRLFDT 420

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G PLD+ + ++C      +D   F+  + +Q++RAR  ++     T    W  +++  G
Sbjct: 421 YGFPLDLTE-LICRENGYTVDEKQFDMEMSQQKARARNAAV-----TENGDWMIVRQ--G 472

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
              F+GYD       +   RKV  +K                                EV
Sbjct: 473 EQTFVGYDYTEYECRILRYRKVTQKKHSF----------------------------YEV 504

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V D TPFY E GGQ+GD G  + +   + + D  K+     +H  I+E      E S + 
Sbjct: 505 VLDNTPFYGEMGGQVGDQGVLVSEQETVNVLDT-KRENNQSIH--IIEELPKNVEASFMA 561

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   R   + NH+ATHLL +AL  +LG H  Q GS ++P  LRFDV+H + IT  EL+
Sbjct: 562 CVDTDKREASAANHTATHLLDYALKEVLGEHAEQKGSYVSPTTLRFDVSHFQKITDEELR 621

Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            +E  VN  I  +      R    E+A   GA AL G KY D+VRVV          S  
Sbjct: 622 KVERIVNGFIRADYSCDEHRDTPIEEAKKMGAVALFGEKYGDKVRVVRFG------PSCE 675

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF---- 748
            CGG H  STG I    IV ESS+ AG+RRIEA+TG  +   +  Q++ L+ L       
Sbjct: 676 FCGGIHAKSTGSIGFFKIVGESSVAAGVRRIEALTGANSEEAIYTQEDTLRDLKQMLNNP 735

Query: 749 --LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             LKV+    +   E + ++   L+     R  +  +E  S  ++  V+ +  ++ EVDS
Sbjct: 736 KDLKVALKKYIEEHEAMKKDMESLRKQGVARHAKTLIE--SAKEVDGVHIVKAVL-EVDS 792

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLG 864
              K ++  +++   S +I ++G     +  + +++++D++   + NA  + R +A+++ 
Sbjct: 793 SSAKDIVFKVREAFDSKLICVLGSVSGNRPQISVMLSDDMVKEGKKNAGKVIREAAQLI- 851

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGGGG+ H AQ+GG + +  D A+      LK
Sbjct: 852 KGGGGGQAHYAQAGGKDASNIDAAVDKAVELLK 884


>gi|293381586|ref|ZP_06627573.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1]
 gi|290921856|gb|EFD98871.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1]
          Length = 879

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++  +   KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +  Q+ RAR     L S G  +    ++K+K              S 
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G        L  ++TDVQ       +H       VE+G        VL +D + R 
Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K ++  N+V ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736

Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806
           + +  +    Q         I+A +  Q+        DL+     ADVN M+        
Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L       KA+++I + +  LD+   A +L +++A +  G
Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKGLKAGNLIKIAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG N    + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878


>gi|330998231|ref|ZP_08322057.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329568923|gb|EGG50721.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 871

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 338/917 (36%), Positives = 501/917 (54%), Gaps = 77/917 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +F++FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G      +  T  
Sbjct: 4   NEIRDSFVKFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNRPATSKRCTDS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     +D+  
Sbjct: 64  QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVDVLKIDKSN 123

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY TV+        + D EA   W+K   L AD II    +DNFW M  TGPCGPCSEI 
Sbjct: 124 LYATVFEGSPEEGLERDNEAASYWEKF--LPADHIINGNKHDNFWEMGATGPCGPCSEIH 181

Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            D + E     +PG    +++    IEIWNLVFMQ+ ++  Q    LP   IDTGMG ER
Sbjct: 182 IDLRPEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADQSLEPLPAKVIDTGMGFER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +  V+Q K +NYD D+F+ +I+    ++  +Y  +    V  RV+ DHLR+ +F IADG 
Sbjct: 242 LCAVMQGKRSNYDTDVFQPIIRVIGDLSDCRYGEDPKKDVAMRVVADHLRTIAFSIADGQ 301

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP N   GYV+RRI+RRA+ YA   LG  E  M  LLP L  EMG +YPEL   K+LI +
Sbjct: 302 LPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLPVLVQEMGKSYPELEAQKVLISK 361

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            ++ E++ F +TL+ G+ LLD V++     GK  +++G  AF L+DT+G PLD+ + ++C
Sbjct: 362 VMKEEEDSFLRTLETGIRLLDRVMAETRASGKT-VIDGVEAFTLFDTYGFPLDLTE-LIC 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
                 +D  +F+  +++Q+ RAR ++  + +G     W  ++E  G T+F G+D     
Sbjct: 420 RENGMTVDEETFHAEMQKQKERAR-NAAAVETGD----WVVVRE--GETEFKGWDYTEHE 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RKV  +K                                ++V D TPFYAE GG
Sbjct: 473 CHILRYRKVTQKKQTF----------------------------YQIVLDYTPFYAEMGG 504

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G    +   ++I D  K+   + VH  I +      E   +  +D   R     N
Sbjct: 505 QVGDRGVLCSEHETIEIVDT-KRENNLPVH--IAKTLPEHPEADFMACVDTDLRAASEAN 561

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ THLL  AL T+LG HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I ++
Sbjct: 562 HTCTHLLDQALRTVLGEHVEQKGSLVTPEYLRFDFSHFQKVTDEQLREVERIVNAKIRED 621

Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           LP+   R M  E A   GA AL G KY DRVRV  V++ D    S   CGG H  STG I
Sbjct: 622 LPLQDHRDMPIEKAKELGAIALFGEKYGDRVRV--VQFGD----SVEFCGGCHAKSTGRI 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMG-QD--EKLKSLASFLKVSQGNVVGRVEE 762
            ++ I+SESS+ AGIRRIEAITG++  + L   QD   +L++L +     +  ++  +EE
Sbjct: 676 GMVKILSESSVAAGIRRIEAITGEKVENMLYTLQDLTNELRTLFNNAPDVKAAILKSIEE 735

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                ++++    ++  Q     +S   I +   +   I  + +  +K +   L+   + 
Sbjct: 736 NAILKKQIEESMKEKAAQAKARIVSQAAIVNGVTLYRSILPMPADLVKDMAFQLRNGAED 795

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            ++ ++G   E K  +    +++++     N   + R +AK++  GGGGG+PH A +GG 
Sbjct: 796 ALV-IIGSLHEGKPMLTAAASDNMVKAHGMNVGKIVREAAKLI-QGGGGGQPHFATAGGK 853

Query: 881 NGNKADQAIAGVASFLK 897
           N   AD   A V  F++
Sbjct: 854 N---ADGLSAAVDKFVE 867


>gi|58336754|ref|YP_193339.1| alanyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227903315|ref|ZP_04021120.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|75358009|sp|Q5FLW6|SYA_LACAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58254071|gb|AAV42308.1| ala-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868944|gb|EEJ76365.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 879

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 355/925 (38%), Positives = 522/925 (56%), Gaps = 92/925 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N+      ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENDEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEIMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIEKAKNSDDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  ++ Q+ RAR     L S G  +    ++K+K              S+
Sbjct: 415 GLK-VDKKGFDAEMQAQKDRARKARGDLQSMGRQDVTLMNIKDK--------------SE 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F       + ++P   L +        IV   ++V++A +G+   +VFD+TPFYAE GGQ
Sbjct: 460 F----EYGVYEEPHAKLID--------IVVDDKLVDKA-NGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQL 583
           + D G     DG +  ++TDVQ       +H   +   IL  E     VL ID + R  L
Sbjct: 507 VADHGGIYNQDGELVAKVTDVQHAPNDQNLHFVDL---ILPMEKGQEYVLKIDKERREGL 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELKS+E+ VN  I
Sbjct: 564 RHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPRELKSVEELVNQKI 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              + V T I   E+    GA AL   KY D+VRVV +        SS  CGGTHV +T 
Sbjct: 624 WDAIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----SDFSSEFCGGTHVDNTD 678

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEE 762
           +I +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K ++  N+V +++ 
Sbjct: 679 QIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEVVKATKPENIVDKIDS 738

Query: 763 IWEEYRKLQ---------LIHAKR-KLQLNVE---DLSC-HKIADVNFMSHIISEVDSKE 808
           I  E R  Q         +  AK  ++  NV+   DL+    IADVN M+         +
Sbjct: 739 IENELRDSQKQVEALTKKINQAKAGEIFDNVKQAGDLTVIAAIADVNGMN---------D 789

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
           L+ + D  +   +S +++L     + KA+++I + +  LD+   A DL + +A +  GGG
Sbjct: 790 LRELADNWKSGNKSDVLVLAA-ENDGKANMIISLDQRALDKGLKAGDLIKKAAPLF-GGG 847

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGRP+MAQ+GG      + AI  V
Sbjct: 848 GGGRPNMAQAGGKKPEGLNDAIKAV 872


>gi|254425077|ref|ZP_05038795.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196192566|gb|EDX87530.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 887

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 341/901 (37%), Positives = 502/901 (55%), Gaps = 63/901 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL F++  GH +L S+SL+P  DPT++ T +GM+PFK IF GQ    +   TT 
Sbjct: 21  ADIRKQFLSFYEARGHRILDSASLVP-EDPTVLLTIAGMLPFKPIFLGQRSVEFDRATTS 79

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+ F L   R
Sbjct: 80  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKAQAIAWAWELSTEIFKLPADR 135

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           +  +++ +D+EAF +W+   G+  ++IIR+   DNFW    TGPCGPCSE+++D      
Sbjct: 136 IVPSIFRDDDEAFAIWRDEIGIPENRIIRMGEADNFWKSGPTGPCGPCSELYYD-FHPER 194

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   NNY
Sbjct: 195 GDDTIDLEDDTRFIEYYNLVFMQYNRDAEGNLEPLQAQNIDTGLGLERMAQILQGVPNNY 254

Query: 245 DIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQA+ Q+  + Y        V+ +VI DH+R+   ++ADGI  +N GRGYVL
Sbjct: 255 ETDLILPIIQAAAQIANLDYHQATDAQKVSLKVIGDHVRAVMHMVADGISASNVGRGYVL 314

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG   P    +          AYP +   +  I+  L  E+ +F +T
Sbjct: 315 RRLIRRVVRHGRLLGIDRPFTTEVAERSIALTEDAYPAVRTRETAIKNELDREETQFLQT 374

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG   L  +L+   K   ++G  AF+LYDT+G PL++ Q+I    G+  +D   F   
Sbjct: 375 LARGEKRLADILAEQPKQ--VSGKDAFELYDTYGFPLELTQEIAEESGIT-VDTERFEIE 431

Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +QR R++A   ++ L   T +    +L E+  +T+FIGY  L                
Sbjct: 432 MSQQRERSKAAHETIDL---TVQSSLDTLAEQIDSTEFIGYQRLNS-------------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+AI+  GE V+ A +G  V++V DQTPFYAE+GGQ+GD G   GD +
Sbjct: 475 ---------QSRVEAILINGESVDLAETGDDVQIVLDQTPFYAESGGQIGDRGYLSGDTV 525

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV+K+    FVH   VERG L  +  +   ID   RR+   NH+ATHLL  AL +
Sbjct: 526 VIRIEDVKKEG-AFFVHFGKVERGSLTVDSQVSAQIDRACRRRAQANHTATHLLQAALKS 584

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + +T  +L+ +E  VN  IA+      + M   +A
Sbjct: 585 LVNESISQAGSLVDFDRLRFDFHCPQALTPEQLQQVEKQVNSWIAEAHDADVQTMPIAEA 644

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY D VRV+       GV S  LCGGTHVS+T EI +  I+SE+ I AG
Sbjct: 645 KAKGAVAMFGEKYGDEVRVIDYP----GV-SMELCGGTHVSNTAEIGVFKIISETGIAAG 699

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKR 777
           IRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q  L   K 
Sbjct: 700 IRRIEAVAGPAVLDYLEVRDRIVRDLSARFKTKPEEISDRVTALQTELKNAQKDLAALKS 759

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEK 834
           +L L   D   +K   +  +  I++ +++ E   LK+  + L +K+  G ++L  +  E 
Sbjct: 760 ELALAKSDQLLNKAEAIGGIPIIVANLEAVEADALKTAAERLLQKLGDGAVVLGSVPTEG 819

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGG------GGGGGRPHMAQSGGPNGNKADQA 888
           K S++   ++ ++ +         + K +GG      GGGGGRPH AQ+GG +  K  +A
Sbjct: 820 KVSLVAAFSKPVISK------GLQAGKFIGGIAKLTGGGGGGRPHFAQAGGRDATKLPEA 873

Query: 889 I 889
           +
Sbjct: 874 L 874


>gi|284801894|ref|YP_003413759.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995036|ref|YP_003416804.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057456|gb|ADB68397.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060503|gb|ADB71442.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 832

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 343/879 (39%), Positives = 491/879 (55%), Gaps = 78/879 (8%)

Query: 47  KNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERA 106
           K  F G   P    +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE A
Sbjct: 2   KKYFDGSVIPDNPRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGA 57

Query: 107 IQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           I  AW+ LT  K    D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW + 
Sbjct: 58  IVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG 115

Query: 165 ETGPCGPCSEIFFDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
             GP GP SEIF+D+G          E  PGG      E ERY+EIWNLVF QF      
Sbjct: 116 -IGPSGPDSEIFYDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDG 168

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNH 272
               LPK +IDTGMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  
Sbjct: 169 TYTPLPKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAF 228

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           +VI DH+R+ +F I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   
Sbjct: 229 KVIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKI 288

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390
           M S YPE+      I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKL
Sbjct: 289 MNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKL 348

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLK 449
           YDT G P+++ ++     GL  +D   F   ++EQR+RARA    + S   + ++  +L 
Sbjct: 349 YDTFGFPVELTEEYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLT 407

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           EK   + F+GY+                       T  VS I+  ++Q   +V+E  +G 
Sbjct: 408 EK---SAFVGYNS----------------------TEHVSEIL-YLIQNDTLVDEVAAGN 441

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           + +V+F +TPFYAE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  
Sbjct: 442 EAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGD 501

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L +D   RR+   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT 
Sbjct: 502 TVKLAVDRVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITE 561

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            EL  +E+ VN+ I + + VV   M   +A   GA AL G KY D VRVV V     G +
Sbjct: 562 EELTKMEEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKY 616

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGG HV +T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS L
Sbjct: 617 SIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLL 676

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSH 799
           K +      +VE +  + R++     KR+ +  +  L+    AD          V  ++ 
Sbjct: 677 KTTTKETPQKVELLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAK 731

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
            ++  D  +L+  +D  + K   GI++L  +  +K   +  V  E +   ++A  L +  
Sbjct: 732 QVNAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEV 791

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           A    GG GGGRP MAQ+GG N  +   A+  V++++K+
Sbjct: 792 ATRC-GGNGGGRPDMAQAGGKNPAELRTALDYVSTWVKE 829


>gi|282859190|ref|ZP_06268312.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588009|gb|EFB93192.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 885

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 333/936 (35%), Positives = 500/936 (53%), Gaps = 90/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA + W  +  L AD II    +DNFW M + GPCGPC
Sbjct: 121 DPKDLYVTVFEGSPEENIPRDDEAAQYW--LKHLPADHIIDGNKHDNFWEMGDIGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D + E    G+PG    +++  + IEIWN VFMQF ++       L    IDTGM
Sbjct: 179 TEIHIDSRPENERNGIPGRELVNKDDPQVIEIWNNVFMQFNRKADGSLEPLAMNVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNHR 273
           G ER+  +LQ K +NYD D+F+ +I+  E ++  KY          E  N      V  R
Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIKEIEAISNFKYGFTTPSGKDGECANDQEKVDVAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           VI DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  LLP L  E
Sbjct: 299 VIADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQREAFMFKLLPTLVRE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKL 390
           MG AYPEL   + LI   ++ E++ F +TL++G+ LL G +  L       L+G  AF+L
Sbjct: 359 MGGAYPELPAQQELIGRVIKEEEDSFLRTLEKGISLLSGAMDELKAHNQTELDGKEAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + ++C      +D   F++ + +Q++RAR  ++ + +G     W  +K+
Sbjct: 419 FDTYGFPLDLTE-LICRENGYTVDEKQFDEEMAQQKARARNAAV-VENGD----WMIVKD 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 473 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   +++ D  K+     VH  IV+      E  
Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGVLVSEDETIEVIDT-KRENNQSVH--IVKEMPKDIEAD 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++P  LRFDV+H + IT  
Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQVLGEHAEQKGSYVSPTTLRFDVSHFQKITDE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN++I ++  +   R    ++A   GA AL G KY D+VRVV          
Sbjct: 620 ELRQVERLVNELIREDYILDEHRNTPIDEAKKMGAVALFGEKYGDKVRVVKFG------P 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748
           S   CGG H +STG I    IVSESS+ AGIRRIEA+TG  +   +  Q++ L  L +  
Sbjct: 674 SCEFCGGIHATSTGRIGFFKIVSESSVAAGIRRIEALTGANSEEAIYDQEDTLTELKAMF 733

Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
                LK      +   E + +E    +     R  +  +E     ++  +N +  +++ 
Sbjct: 734 NNPKDLKAVVQKYIDEHEAMKKEMESSRQQGVARHAKALIE--GVEQVDGLNIVKAVLN- 790

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAK 861
           VD+   K ++  +++ I   ++ ++G   + +  + I++++D++     NA  + R +A+
Sbjct: 791 VDAASAKDIVFKVREAITEKLVCVLGSVNDNRPQLSIMLSDDMVKEGGKNAGKIIREAAQ 850

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++  GGGGG+PH AQ+GG + +    A+      LK
Sbjct: 851 LI-KGGGGGQPHYAQAGGKDASNLSAAVDKALELLK 885


>gi|227877600|ref|ZP_03995654.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256849054|ref|ZP_05554487.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262047536|ref|ZP_06020491.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|227862794|gb|EEJ70259.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256713830|gb|EEU28818.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260572112|gb|EEX28677.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
          Length = 879

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++  +   KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +  Q+ RAR     L S G  +    ++K+K              S 
Sbjct: 415 GLK-VDRKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G        L  ++TDVQ       +H       VE+G        VL +D + R 
Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K ++  N+V ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736

Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806
           + +  +    Q         I+A +  Q+        DL+     ADVN M+        
Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L       KA+++I + +  LD+   A +L +++A +  G
Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKGLKAGNLIKIAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG N    + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878


>gi|307637915|gb|ADN80365.1| Alanyl-tRNA synthetase [Helicobacter pylori 908]
 gi|325998103|gb|ADZ50311.1| Alanyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 847

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 338/890 (37%), Positives = 498/890 (55%), Gaps = 65/890 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFEHC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y    F+GY+                    
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYE-------------------- 452

Query: 482 IDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGI 539
              T   S+        G + + EA   Q+V V+ ++TPFYAE GG +GD G  + GD  
Sbjct: 453 ---TTECSAKALGFFDSGFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKGDEE 509

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D  K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  
Sbjct: 510 AALVLDT-KNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERFEIAKHHSATHLLQSALRE 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A
Sbjct: 567 VLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G
Sbjct: 627 KDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q    K  +
Sbjct: 682 VRRIEAVCGKAFYQLAKEENKELKNAKILLK--NNDVIAGINKLKESVKNSQ----KAPV 735

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +   DL   KI  V+ +  ++ + D KE+   +D L+ K +  + M+    KE +   L
Sbjct: 736 PM---DLPVEKIHGVSLVVGVVEQGDIKEM---VDRLKSKHERLLAMV--FKKENEHITL 787

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               ++   + NA   A   A++L GG GGGR   A +GG +  K   A+
Sbjct: 788 ACGVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834


>gi|298229736|ref|ZP_06963417.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254206|ref|ZP_06977792.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502666|ref|YP_003724606.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238261|gb|ADI69392.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
          Length = 872

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|289167595|ref|YP_003445864.1| alanyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288907162|emb|CBJ21996.1| alanyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 872

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/929 (37%), Positives = 511/929 (55%), Gaps = 90/929 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESHFNYNASQ--- 467

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                       +SS + AIV     V EAVS     ++F +TP
Sbjct: 468 ----------------------------LSSKLVAIVADNTEV-EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTADELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKTPQLKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEV---DSK 807
             +VE + E+ R+LQ    K   +L  +  S         + +VN   +I S+V   D+ 
Sbjct: 733 PHKVEGLQEQLRQLQ----KENTELKEKAASAAAGDIFKDVKEVNAHRYIASQVSVSDAG 788

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G 
Sbjct: 789 ALRTFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGR 843

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG+P MA +GG N  K  + +  VA  L
Sbjct: 844 GGGKPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|307705063|ref|ZP_07641945.1| alanyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621386|gb|EFO00441.1| alanyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 872

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 346/925 (37%), Positives = 508/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDADALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   V ++V   + D  +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDK---VNVLVASKIKD-LHAGNLVKELAPIV-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|325963401|ref|YP_004241307.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469488|gb|ADX73173.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 341/930 (36%), Positives = 508/930 (54%), Gaps = 82/930 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+  Y    +VQK
Sbjct: 6   ITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYSRAVSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT   D     LD
Sbjct: 65  CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTGVDDGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY+ED+EA  LW K +G+ A++I ++  +DN+W   + GP GPCSEI++D+G 
Sbjct: 121 PERLWVTVYEEDDEAKDLWLKNTGVPAERIQKMGKSDNYWHTGQPGPAGPCSEIYYDRGP 180

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFI----LPKMSIDTGMGLERM 233
              + GG P + E   RYIEIWNLVFMQ++ +N   +E F     LPK +IDTG+G+ER+
Sbjct: 181 AYGVEGG-PLADET--RYIEIWNLVFMQYQIENVRSKEDFDVVGELPKRNIDTGLGMERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284
           A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS+  
Sbjct: 238 AMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETDEDPHHTDDVRMRVVADHIRSALM 297

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI+DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +    
Sbjct: 298 LISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPELLPASRDAMKGVYPVVDTDF 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
             I     +E++ F +T+  G   L D V      ++ L+G+ AF L+DT+G P+D+  +
Sbjct: 358 ARISRIAYAEEKAFLRTIASGTARLEDAVRESKAANKPLSGEDAFTLHDTYGFPIDLTLE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D  +F   ++EQR RA+A + G   G  +   F      G T F GY  L
Sbjct: 418 MAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQELLGQGETVFTGYSEL 476

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        S V+ I+  G  V++A +G ++E+V  +TPFYAE
Sbjct: 477 DGE-----------------------SRVRGILTGGRPVQQASTGDEIELVLAETPFYAE 513

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + R   
Sbjct: 514 AGGQAADTGLITGDGFVVEVLDVQRPLKGLSVHKAIVREGEIGADSLVRAAVDRERRHAA 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N  I
Sbjct: 574 EQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSNLAI 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V T++M   +A A GA AL G  Y + VRVV ++    G  S  LCGGTHVS+T 
Sbjct: 634 RNNYAVDTKVMPLAEAKALGAMALFGENYGNEVRVVEID----GAWSRELCGGTHVSNTS 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760
            I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+   
Sbjct: 690 LIGSLSLLGEQSVGSGNRRVEAFVGMDAFRHLAAERALVTELTEMLKVPSGQLADRIATT 749

Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSV 812
                  E+  +  RK QL  +  +L     D        V+ ++H   +V  + +++ +
Sbjct: 750 LAKLKATEKELDRLRKEQLAASAAQLVSTATD-----AGGVSVIAHDAGQVSGADDIRGL 804

Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868
              L+ ++ SG   + + G+S ++   V++V T +        A  L RL+A +L GGGG
Sbjct: 805 ALDLRNRLGSGAATVAVAGVSNDR--PVILVATNEAAREAGVKAGALVRLAAGIL-GGGG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG+  +AQ GG +  K  QA+A V   + +
Sbjct: 862 GGKDDVAQGGGTDAGKVPQALAAVVDAISR 891


>gi|157412393|ref|YP_001483259.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|205830179|sp|A8G242|SYA_PROM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157386968|gb|ABV49673.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 886

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 334/917 (36%), Positives = 528/917 (57%), Gaps = 78/917 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+F+ +  H+++PS+SL+P +DPT+M T +GM+PFK +F G +E+P  +A T+ Q
Sbjct: 15  IRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+TK + L    +
Sbjct: 73  KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSSENI 128

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++++ EDEE+ K+W +  G++ D+I+++   DNFWS  +TGPCGPCSE+++D       
Sbjct: 129 IVSIFHEDEESEKIWIEEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNP--EK 186

Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           GL     E+G+R+IE +NLVFMQ  + +  +   L   +IDTGMGLERMA +LQ+K+NNY
Sbjct: 187 GLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSNNY 246

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +IQ + +++ + Y   +    ++ +++ DH R+   LI+DG+  +N GRGY+L
Sbjct: 247 ETDLIFPIIQKASKISSINYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGYIL 306

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG  +  +  +       M + YP+L     LI   ++ E+ RF +T
Sbjct: 307 RRLLRRMVRHGRLLGIKKEFLSDIASVGIKLMENNYPDLKNNNELILSEIKIEEVRFRET 366

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LLD ++S   K  +++G  AF+LYDT+G PL++ ++I     +  +DI  F + 
Sbjct: 367 LERGEKLLDEIISSGQK--LISGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQRE 423

Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ Q+ RA+A S  +     G+ E+                 DL   + F  ED    C 
Sbjct: 424 MDAQKERAKAASSNIDLTLEGSLER---------------EIDLFNKTIFNGED----CL 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + ++ I     +V++A  GQ+V++V DQT FY E+GGQ+GD G      
Sbjct: 465 DS--------EAKIQGIFLDSNLVKKASEGQRVQIVLDQTSFYGESGGQVGDNGIICSTD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + +  V +K + +F+H  IV+ GI     ++   ++   R + S NH+ATHLL  AL 
Sbjct: 517 AEILVDKVVRK-KNVFLHDGIVKNGIFTVGQTIKTVVNPAKRVRASANHTATHLLQSALK 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++  +VSQ GS +  + LRFD   SKP++  +++ +E  VN  I QN P+V + M + +
Sbjct: 576 EVVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKRE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+  GA A+ G KY D VRVV V     GV S  LCGGTHV +T E+    I+SE  I A
Sbjct: 636 ALEKGALAMFGEKYGDEVRVVDVP----GV-SMELCGGTHVKNTSELGCFKIISEEGISA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E     LI+  ++
Sbjct: 691 GVRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSE-----LINKNKE 745

Query: 779 LQLNVEDL------SCHKIAD-VNFMSHIISEVDSKELKSVMD-ALQKKIQSG---IIML 827
           +Q   +++      S H  A+ VN  S +++++D  +  S+   AL    Q G   +++L
Sbjct: 746 IQKMKDEIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVIL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881
            GI   +   +L VV+  L D   AV +   + K++        GGGGG+P+ AQ+G  +
Sbjct: 806 GGIPNPENRKLLFVVS--LGDE--AVKIGLHAGKLINEIARICAGGGGGKPNFAQAGARD 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K D A+    + L+K
Sbjct: 862 IDKLDFALDYAKNHLQK 878


>gi|296110668|ref|YP_003621049.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832199|gb|ADG40080.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 893

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 355/942 (37%), Positives = 514/942 (54%), Gaps = 108/942 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPNNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+  I  AW+LLT    + LD+
Sbjct: 67  QKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKDDVIPWAWELLTSPEWYGLDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             LY+TVY +D+EA K+W++ + +S D I  +   DNFW + E GP GP SEIFFD+G  
Sbjct: 123 ELLYVTVYPKDQEAKKIWQEKTDISNDHIYEV--EDNFWDIGE-GPSGPDSEIFFDRGTS 179

Query: 181 ---------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227
                    E  PGG      E ERY+EIWN+VF QF       +  +   LP  +IDTG
Sbjct: 180 FQDLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNSQYPELPHKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN----NIVNHRVIVDHLRSS 282
           MGLER+ +V Q    N+D DLF  +IQA+ +++    Y+ N    +  + +VI DH+R+ 
Sbjct: 234 MGLERLVSVFQNGRTNFDTDLFLPIIQATSELSNNFVYDSNKDSDSNTSFKVIADHIRAI 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG LP+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+ +
Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTTLVPIVGEIMKSYYPEISE 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLD 399
               I++T+ +E++RF  TL  GL LL+ V+S +   GK + L+G VAFKL DT+G PL+
Sbjct: 354 NTAKIQKTIAAEEKRFNATLTGGLALLNDVISDVKLAGKTQ-LSGAVAFKLSDTYGFPLE 412

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q+     GL  +D++ FN+AL+ QR+RARA               S  +  G    + 
Sbjct: 413 LTQEQASDAGLT-VDVVGFNEALQAQRTRARAAR-------------STDKSMGVQNAVL 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVV 514
            DL   SK+      V   +  +D      + V AI+ Q E     +++ AV+  ++++V
Sbjct: 459 TDLKVPSKY------VGWSETAVD-----GAEVVAIIGQNETGIDALLQTAVANSQLQLV 507

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           FD TPFYAE GGQ+ D G  + D   L  +I DVQ    G  +H   V     +    + 
Sbjct: 508 FDTTPFYAEMGGQVADFGDVLNDENTLIGKIIDVQNAPNGQHIHTVEVLSD-FKLGDKVN 566

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D      +S NH+ATH+L  AL  ++G  + Q GS + P  LRFD TH  P++ A+L
Sbjct: 567 LRVDMARHTAVSKNHTATHMLDQALRNVIGGDIHQAGSLVEPKYLRFDFTHEGPVSEADL 626

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            +I+  +N  IA+NLPV     + E A   GA A+ G KY + VRVVS+     G  +  
Sbjct: 627 DAIDTLINAEIAKNLPVSWLETDIETAKKMGAVAVFGEKYGELVRVVSI-----GEFNKE 681

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
             GGTHV++T E+ L  IVSES I AGIRRIEA+TG +A +    +++ LK +A+ +K  
Sbjct: 682 FDGGTHVNATSELGLFKIVSESGIGAGIRRIEAVTGLQALALYKSEEKALKEIANAVKAQ 741

Query: 753 Q-GNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKE 808
           +   V  +V ++  E +  Q +I +  K   N   +D+  H I  +N  S+I ++     
Sbjct: 742 KLTEVPTKVADVQTELKAAQRMIESLEKQLANAAADDVFTH-IETINDHSYITAK----- 795

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
                  LQ     G+  +    KE K S ++V+  D+  + N +  A   A   G   G
Sbjct: 796 -------LQVSGIDGLRQVADNWKETKPSDILVLAADVDGKVNLIVAASPDANAAGIKAG 848

Query: 869 G--------------GRPHMAQSGGPNGNKADQAIAGVASFL 896
                          GRP MAQ+GG N    D A A VA FL
Sbjct: 849 DLIKAIAPKVGGGGGGRPDMAQAGGKNPAGIDAAFASVADFL 890


>gi|169343614|ref|ZP_02864613.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169298174|gb|EDS80264.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 879

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/905 (37%), Positives = 518/905 (57%), Gaps = 64/905 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + +TT 
Sbjct: 7   NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + +
Sbjct: 67  QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181
           LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+GE   
Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181

Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             +   L  S  + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q  
Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEGRG
Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+ERF
Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D G+ +L   +S + +  +++L+G  AFKLYDT+G PL++ Q+IL  + L  +DI 
Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKCLE-LDIE 418

Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +FN+ ++EQR RAR     +  +G       K+  S+      T+F GY  L        
Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD 
Sbjct: 467 ----------------FNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH
Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T
Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M+ ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IV
Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769
           SES + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++  
Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
            ++   K KL    ED       ++N +  + +E   VD   L+ + D ++ K+ +GI++
Sbjct: 746 KEIAELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L       K +++ + T++ L   N V   ++      + GGGGGGRP MAQ+GG N   
Sbjct: 806 LAS-GNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862

Query: 885 ADQAI 889
             +A+
Sbjct: 863 IAKAL 867


>gi|303254539|ref|ZP_07340643.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|301802125|emb|CBW34861.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302598507|gb|EFL65549.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455]
          Length = 872

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 346/925 (37%), Positives = 507/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|332074964|gb|EGI85436.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
          Length = 872

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 345/925 (37%), Positives = 508/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       + A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNHNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|212696194|ref|ZP_03304322.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676823|gb|EEB36430.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 867

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 323/901 (35%), Positives = 514/901 (57%), Gaps = 58/901 (6%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT+  ++++
Sbjct: 66  SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTENLEINK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             L+++VY+ D+EA+K+W +  GLS D+I+R    DNFW + E GPCGP SEIF D+G  
Sbjct: 122 DLLWVSVYENDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVE 180

Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + I      PG +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ
Sbjct: 181 KAIDENDNKPG-NDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K N ++ID+ +++I+  E+++  KY+ N  + ++ RVI DH ++ +F+++DGI P+NE 
Sbjct: 240 NKDNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     +  ++  +       Y EL+  K  I   ++ E+ 
Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSVIDCVIDSYKDEYDELVDRKDKIISVIKKEEA 359

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  T+D GL +L+  +  L     + L+G  AFKLYDT+G PLD+ ++IL    L  +D
Sbjct: 360 NFQNTIDSGLDILNEYIKDLRDKNKDTLDGKEAFKLYDTYGFPLDLTKEILTENNLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ +E QR+ AR         + + I     +++  T+F+GYD L           
Sbjct: 419 TKEFDKQMENQRNLARNARKSDAGWSLDSINI---DEFDKTEFVGYDDLE---------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        V + +  +    E V     G K  V+ D+T FYAE GGQ+ DTG  
Sbjct: 466 -------------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I D  + ++ +VQKK E I +H+  V  G L    +  + +D + R  ++ NH+ATHLL 
Sbjct: 513 ITDSAKAKVYNVQKKNE-IIIHYVEVIDGDLNLAKADFI-VDKERRLDITRNHTATHLLD 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  IL   V Q GS +  + LRFD T+   ++  E++ IE+ +N+ I Q L V   IM
Sbjct: 571 QALRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIRKIENEINEKIRQQLKVKKEIM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             +++   GA  L   KY D VRVVS++      +S  LCGG HV+++ E+++  I+ ES
Sbjct: 631 PYKESEKLGAIGLFEDKYKDMVRVVSID-----DYSIELCGGCHVNNSSEVLMFKILQES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  +GIRRIEAITG++   +L      +  ++  LK +  N++ + E + EE + L+L  
Sbjct: 686 SAASGIRRIEAITGRKVYDYLNSNLGLINVVSKVLKTNPKNILSKAESLNEEIKNLKLDI 745

Query: 775 AKRKLQLNVEDLSC---HKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            K K + N +D+     +++ D N    + H     D   L++  + +++K +  I++  
Sbjct: 746 QKLK-EFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K      V++ L +R+NA  + +  +K+  GG GGG+ + AQ+GG + +K D+A
Sbjct: 805 TVNND-KIVFTASVSDSLTNRYNAGKIVKEVSKIT-GGNGGGKKNFAQAGGKDISKLDEA 862

Query: 889 I 889
           +
Sbjct: 863 L 863


>gi|288904885|ref|YP_003430107.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|288731611|emb|CBI13166.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
          Length = 872

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 343/916 (37%), Positives = 508/916 (55%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT    FD  +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                    L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G  +LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++   +G
Sbjct: 358 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA+ +  GS G   +   S+ E+              S F
Sbjct: 417 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             ED +VL             S +  I+   E  E    GQ + +VF +TPFYAE GGQ+
Sbjct: 462 SYED-EVL------------DSTLSVIIADNERTEAVSEGQAL-LVFAKTPFYAEMGGQV 507

Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  N
Sbjct: 508 ADHGVIKNDKGDIVARVTDVQKAPNGQALHTVDVLSS-LSVGTTYTLEIDSKRRHRVIKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   
Sbjct: 567 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI 
Sbjct: 627 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           +  KLQ  +A+ K +            + + N + +I S+V   D+  L++  D  ++K 
Sbjct: 742 QLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L     EK   ++   ++D+    +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           +  K    +A VA  L
Sbjct: 857 DAAKIADLLAAVAENL 872


>gi|88809533|ref|ZP_01125041.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786752|gb|EAR17911.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 894

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 354/918 (38%), Positives = 518/918 (56%), Gaps = 72/918 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  +PS+SL+P  DPT++ T +GM+PFK IF GQ++      TT 
Sbjct: 18  AEIREAFLSFFEQRGHRRMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCATTS 76

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + 
Sbjct: 77  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 132

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183
           L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D + E  
Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPELG 192

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G+    E+ +R+IE +NLVFMQ  +  +     L   +IDTGMGLERMA +LQ+  NN
Sbjct: 193 DEGI--DLEDDDRFIEFYNLVFMQSNRDAQGVLTPLANRNIDTGMGLERMAQILQKVPNN 250

Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI+DG+  +N GRGY+
Sbjct: 251 YETDLIFPLIQAAADRAGVDYYQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGYI 310

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR + + RLLG  +P +  +  A    M SA+P+LI+ + +I   L+ E+ RF +
Sbjct: 311 LRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLIERREVILAELQREEARFLE 370

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ Q+I    GLA +D+  F  
Sbjct: 371 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLAGFET 427

Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           A+E+QR RA+A ++ +        +++   L++    T+F GY+ L              
Sbjct: 428 AMEQQRQRAKAAAVSIDLTLQDAIDQVAAGLQD----TEFRGYEQLE------------- 470

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-- 535
                      SS ++A+V  GE  + A +G  V+VV D TPFY E GGQ+GD G  +  
Sbjct: 471 ----------QSSSIQALVVNGEPAQSASAGDAVQVVLDVTPFYGEGGGQIGDCGTLVAD 520

Query: 536 ---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GDG+ + +  V +    +FVH   VERG L     +   +D   RR+   NH+ATHL
Sbjct: 521 GQAGDGLIVMVESVSRN-RSVFVHSGRVERGALSVGDVVHGRVDRACRRRAQANHTATHL 579

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++   + Q GS ++ D LRFD    + +T+ EL  IE  +N  IA    +  +
Sbjct: 580 LQAALKQVVDPGIGQAGSLVSFDRLRFDFHCPRAVTTEELGRIESLINGWIADAHALEVQ 639

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E A A+GA A+ G KY D VRVV V        S  LCGGTHV +T EI L  IVS
Sbjct: 640 EMAIEQAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVRNTAEIGLFKIVS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---K 769
           ES + AGIRRIEA+ G     +L  +D  +K L    K   G ++ RV  + +E +   K
Sbjct: 695 ESGVAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVSALQDELKATGK 754

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKI-QSGIIM 826
                           L+   +A  NF  +   +  VD   L+    +L  ++   G ++
Sbjct: 755 ALAAAQAELAVAKSAALAAQAVAVGNFQLLVERLDGVDGSGLQGAAQSLVDQLGDGGAVV 814

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-KVLGG------GGGGGRPHMAQSGG 879
           + G+        +I+V     D    V  A+L A K +GG      GGGGGRP++AQ+GG
Sbjct: 815 IGGLPDPADQGKVILVAAFGKD----VIAAKLQAGKFIGGIAKLCGGGGGGRPNLAQAGG 870

Query: 880 PNGNKADQAIAGVASFLK 897
            +G   D A+    + L+
Sbjct: 871 RDGASLDAALTAARAELE 888


>gi|307706847|ref|ZP_07643649.1| alanyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617720|gb|EFN96885.1| alanyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 872

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 345/925 (37%), Positives = 505/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDV-LAPLALNQEYTLAIDT 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDEVAGKL 872


>gi|303258979|ref|ZP_07344958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303261663|ref|ZP_07347610.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264332|ref|ZP_07350252.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303265869|ref|ZP_07351766.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303268202|ref|ZP_07354001.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302637243|gb|EFL67731.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639922|gb|EFL70378.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302642281|gb|EFL72629.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302644604|gb|EFL74854.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646144|gb|EFL76371.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 872

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 346/925 (37%), Positives = 507/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREIEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|306829747|ref|ZP_07462936.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428098|gb|EFM31189.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 872

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/926 (37%), Positives = 503/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y ED++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G    + +++ L   G++ I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++AS LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV     K   ++   T+D+    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGYKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|169833050|ref|YP_001694818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|205830228|sp|B1ICI3|SYA_STRPI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168995552|gb|ACA36164.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 872

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 345/925 (37%), Positives = 508/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       + A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNHNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQPKIQELLDAVAGKL 872


>gi|126663290|ref|ZP_01734288.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria
           bacterium BAL38]
 gi|126624948|gb|EAZ95638.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria
           bacterium BAL38]
          Length = 878

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 343/923 (37%), Positives = 499/923 (54%), Gaps = 82/923 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+ NGH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    +   QK
Sbjct: 6   IRKQFLQFFESNGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGNPKSPRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWQLLTEVYKIPKENLY 125

Query: 127 ITVY----DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V+    DE    D+EA+ +WK++  +S D+II     DNFW M + GPCGPCSEI  D
Sbjct: 126 VSVFEGNPDENVPFDQEAWDIWKEL--ISEDRIILGNKKDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 -QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     + G S    +  + +EIWN VFM+F ++       LP   +DTGMG ER+ 
Sbjct: 184 LRTEAEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSS 283
             LQ KT+NYD D+F  LI+  EQ+TG+KY  N + N            RVIVDH+R+ +
Sbjct: 244 MALQGKTSNYDTDVFTPLIEKVEQITGLKYTSNEVKNISEEQNKTNIAIRVIVDHVRAVA 303

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG  +PE+  
Sbjct: 304 FAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFINKLVEVLANQMGEFFPEIKS 363

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            + L+   +R E+  F +TL++GL LL+ V++     E+ +G  AF+LYDT G P+D+  
Sbjct: 364 QQQLVTNVIREEEASFLRTLEQGLQLLENVMAETSGKEV-SGAKAFELYDTFGFPIDLTA 422

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL  +G   +D   FN A++EQ++R+RA      S  + + W  L      T F+GYD 
Sbjct: 423 LILREKGY-DLDEAGFNVAMQEQKARSRA-----ASEVSTEDWNVLIPGNVET-FVGYDQ 475

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                 +   RKV  +K                            G   ++V D TPFY 
Sbjct: 476 TANEVKITRIRKVDSKK---------------------------DGVLYQIVLDNTPFYP 508

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G  +     + I D  KK   + +H A  ++     E   V  ++   R  
Sbjct: 509 EGGGQVGDKGTLVSANETIDIIDT-KKENNLILHFA--KQLPENIEAGFVAKVNTDLRTS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            S NHSATHL+H AL TILG+HV Q GS + P+ LRFD +H   ++  EL+ +E +VN  
Sbjct: 566 TSKNHSATHLMHLALRTILGTHVEQKGSLVNPNYLRFDFSHFSKVSDDELRQVEASVNAQ 625

Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   L +V  R +  ++A+  GA AL G KY D VR+  +E+ D    S  LCGG HV +
Sbjct: 626 IEAQLQLVEHRNIPIKEALDKGAMALFGEKYGDNVRM--IEFGD----SKELCGGIHVKN 679

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I+SE ++ AGIRRIEAITG   +     Q+  L  +   LK  Q +V+  V 
Sbjct: 680 TAEIWHFKIISEGAVAAGIRRIEAITGDAVKDFYTSQENTLAEIKEVLKNPQ-DVLKSVA 738

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVD--SKELKSVMDAL 816
            + ++  KL+    ++ ++  +E L    +AD   VN +  +  +VD      K +  A+
Sbjct: 739 SLQDDNAKLKK-QVEQLVKEKIEGLKNSLVADFQEVNGIHFLAKQVDLSMSSTKDLAQAI 797

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
                +  + L  I ++   ++   ++++L+     NA ++ R   K++  G GGG+P  
Sbjct: 798 GTSKPNAFVFLASI-EDNAPNIHCYISKELVAEKGLNAGNVIRELGKLI-DGNGGGQPFF 855

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A   G N     +A+  V  F+K
Sbjct: 856 ASGKGKNVGGIKEALEKVVDFVK 878


>gi|293365697|ref|ZP_06612406.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703642|ref|ZP_07640584.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316065|gb|EFE56509.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623049|gb|EFO02044.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 872

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/926 (37%), Positives = 501/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y ED++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G    + ++S L   G+  I   DV FKLYDT+G P+++  +
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVSDLKAKGQSVIAGSDV-FKLYDTYGFPVELTAE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++AS LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV     K   ++   T+D+    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGYKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|160942602|ref|ZP_02089847.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446081|gb|EDP23084.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103506|emb|CBL01050.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 886

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/922 (37%), Positives = 515/922 (55%), Gaps = 67/922 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFK+  I  AW+ LT +    
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKDEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + RL+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+
Sbjct: 120 IPKDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E + G  Y+ +    ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QNVGNLFEVDTVQSVLHHVEHIAGKTYKQDPKTDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG   P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGIDHPFLVDLVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K   ++L+G  AFKL DT G PLD+ ++I   +GL  I
Sbjct: 359 ANFARTIDAGMNILNNMIDRLEKAHQKLLSGMDAFKLNDTFGFPLDLTKEIAAEQGLE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFMK 470
           D   F+  +++Q+ RARA  L    SG +E ++ +L+ +   T F GYD L  +G+    
Sbjct: 418 DEDGFHAEMKKQKERARAERLKKNISGWSEDLFGALEAE--PTVFTGYDTLTDKGTVVAL 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            D + L      D                   EEA  G  V VV D+TPFYAE GGQ  D
Sbjct: 476 SDEETLTDAIATD-------------------EEAKDG--VLVVLDKTPFYAEMGGQAAD 514

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G    L++ DV+K  +G +VH  ++E GI++    L   +D   R  ++ NH+AT
Sbjct: 515 HGVLNGAECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDVLTAQVDKGYRMAIARNHTAT 574

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG HV Q GS        FD TH   +T  EL  ++  VND I  ++ V 
Sbjct: 575 HLLQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELARVQKIVNDKIFDSMNVT 634

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            + M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I    I
Sbjct: 635 VQEMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKI 689

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE--- 766
           VSESS+ AGIRRIEA+TG+        Q+  L  +A+ LK +    +  R E +  E   
Sbjct: 690 VSESSVAAGIRRIEAVTGRNLLIRANLQEAMLHDVANTLKANNVAALPARAEAVMAENKA 749

Query: 767 -YRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             R+L+ + AK        L  N E+    KIA   F            L+ + D+++ K
Sbjct: 750 MSRELEEMKAKIAASKVDSLFDNAEEADGVKIASAYFTG-----TTGDTLRGMCDSIRDK 804

Query: 820 IQSGII-MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQ 876
             + ++ +LVG +++K   + + VT + L +   +    L  ++  + GG GGG+P  A 
Sbjct: 805 AVNPVVAVLVGKAEDK---ITMAVTVNKLAQEKGLKAGVLVKELSAIAGGKGGGKPDFAM 861

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
           +G  +  K D+A+A V++ +KK
Sbjct: 862 AGLKDETKIDEALASVSAIVKK 883


>gi|72383213|ref|YP_292568.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123620600|sp|Q46I13|SYA_PROMT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72003063|gb|AAZ58865.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 886

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 344/899 (38%), Positives = 519/899 (57%), Gaps = 59/899 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++      T+ QK
Sbjct: 19  IRDAFINFFVQHNHKKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRATSSQK 77

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ + + 
Sbjct: 78  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNPQNIV 133

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I+V+ ED EA ++WK++ G+ A++IIR+   DNFWS   TGPCGPCSE++FD    + G 
Sbjct: 134 ISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPEL-GS 192

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+  R+IE +NLVFMQ+ +  K     L    IDTGMGLERMA +LQ+K+NNY+ 
Sbjct: 193 DEIDLEDDSRFIEFYNLVFMQYNRDLKGNLEPLANCHIDTGMGLERMAQILQKKSNNYET 252

Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   LI A+  +  +KYE  N  N    ++I DH R+ + LI DG+  +N GRGY+LRR
Sbjct: 253 DLIFPLINAAALLAQIKYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGYILRR 312

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RL+G  +P +  L       M +AYP+L++ K +I   L+ E+ RF +TL+
Sbjct: 313 LIRRMIRHGRLVGIIQPFLPQLAEIAIELMKNAYPQLLEKKKIILNELKIEESRFLETLE 372

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG  LL  + SH  + ++++G  AF+LYDT+G PL++ ++I   +G++ +DI  F   + 
Sbjct: 373 RGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKGIS-VDINGFENEMA 429

Query: 424 EQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +QR RA+  S+ +     G+ E+   SL   +  T+F GY+ L                 
Sbjct: 430 KQRKRAKEASVSIDLTEEGSIER-EISL---FDDTRFEGYEKLE---------------- 469

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   +S V  I +  E V++AV G  V+++ ++TPFYAE+GGQ+GD G      + 
Sbjct: 470 -------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGLITSQDLE 522

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + + +V+KK + IF+H  IV  G+L    S+ + +    R++ + NH+ATHLL  AL   
Sbjct: 523 VSVENVRKK-KNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKLS 581

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           + S VSQ GS ++   LRFD    KP+T  EL+ +E  +N  I ++  +  + M  ++A+
Sbjct: 582 IDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEARINQWINEDHLIQIKTMPIKEAM 641

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA A+ G KY D VRVV V     G+ S  LCGGTHV+ T ++    I++E+ I +GI
Sbjct: 642 AAGALAMFGEKYGDVVRVVDVP----GI-SMELCGGTHVTRTSQLGTFKIINETGIASGI 696

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKRK 778
           RRIEAI G     +   +D  +K L+   KV    +V RV  +  E   +  +LI  K +
Sbjct: 697 RRIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKNE 756

Query: 779 LQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKEK 834
           L L            +     +   +  VD   L+S   +L   + +   ++  GI  ++
Sbjct: 757 LALAKALGLATYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQE 816

Query: 835 KASVLIVV---TEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + L+ V   + DL+ D  +A       AK + GGGGGGRP++AQ+GG      D A+
Sbjct: 817 IDNKLVFVAAFSPDLVSDGLHAGKFISGVAK-MCGGGGGGRPNLAQAGGSQPQSLDLAL 874


>gi|313157475|gb|EFR56894.1| alanine--tRNA ligase [Alistipes sp. HGB5]
          Length = 873

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 308/787 (39%), Positives = 441/787 (56%), Gaps = 72/787 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH ++PS+ ++   DPTLMFTN+GM  FK+IF G     Y      
Sbjct: 4   NKIRRAFLDFFESKGHVIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRAADT 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHT FEMLGN+S+G YFK+ AI+ AW+LL   + L   R
Sbjct: 64  QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLGGVYKLPADR 123

Query: 125 LYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +Y TV++         D+EA+  WK+   L  D IIR   +DNFW M ETGPCGPCSEI 
Sbjct: 124 MYATVFEGSEEDGVPFDQEAYDYWKQF--LPEDHIIRGNKHDNFWEMGETGPCGPCSEIH 181

Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           FD + E      PG    +    + IEIWNLVFMQF ++       LP  ++DTGMG ER
Sbjct: 182 FDLRDEAEIAAKPGREMVNAGHPQVIEIWNLVFMQFNRKANGSLEPLPARNVDTGMGFER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +  +LQ K +NYD D+F+  IQ   Q++G  Y  +    V  RVI DHLR+ +F IADG 
Sbjct: 242 LCMILQGKKSNYDTDVFQPTIQRISQLSGKAYGADAKCDVAMRVIADHLRAIAFSIADGQ 301

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N   GYV+RRI+RRA+ Y    LG+TEP +  L+P L  +MG  +PEL   + LIE+
Sbjct: 302 LPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTICKLVPGLVEQMGEQFPELKAQQSLIEK 361

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +  E+  F +TL  G+ LLDGV+     +  E+++G  AF+LYDT G P+D+ + I   
Sbjct: 362 VIEEEEASFLRTLATGINLLDGVIEKTKGEGRELISGKDAFELYDTFGFPIDLTELIARE 421

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLR 464
           +G+ G+D+ +F   L+ Q+ R+R       +      W   F ++E    + F GYD L 
Sbjct: 422 QGV-GVDLAAFETELQAQKERSRN-----AAAVDTDDWVELFPIRE----SLFTGYDTLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V         + G +S                     ++VFD+TPFY  +
Sbjct: 472 EQVRIARYRRV--------TSKGKTS--------------------YQLVFDRTPFYGNS 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G       R+ +   +K+  G+ +H  IV+             +D   R+  +
Sbjct: 504 GGQIGDIGYIENADERIAVVATEKE-NGLIIH--IVKELPENPAAGFTAVVDAAKRQSAA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+H AL  +LG HV Q GS +TP+ LRFD +H + +T  EL+ +E  VN  + 
Sbjct: 561 NNHTATHLMHEALRKVLGQHVEQKGSMVTPEVLRFDFSHFQKMTPQELREVEMLVNRAVR 620

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P+   R   +E+A   GA  L G KY D+VR+V          S  LCGGTH S+TG
Sbjct: 621 ANYPLEENREATKEEAEKCGAMMLFGEKYGDKVRMVRFG------SSVELCGGTHTSATG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I++ES+I AG+RRIEA+TG+RA   +   ++ ++ ++ +L   Q  V+  V+++
Sbjct: 675 NIGFFKILNESAISAGVRRIEAVTGERAEQIIYAAEDTMRDISDYLHNPQ--VLQAVKKM 732

Query: 764 WEEYRKL 770
           +E    L
Sbjct: 733 FESNEAL 739


>gi|149019336|ref|ZP_01834698.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|225854830|ref|YP_002736342.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|147931206|gb|EDK82185.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|225722331|gb|ACO18184.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 872

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PCITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|157150203|ref|YP_001450848.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|205830220|sp|A8AYI8|SYA_STRGC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157074997|gb|ABV09680.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 872

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 349/927 (37%), Positives = 510/927 (55%), Gaps = 86/927 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++R A  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRGASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G    + +++ L   G++ I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEVAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  + +  E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVAENAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           PFYAE GGQ+ D G    A G+ +   +TDVQK   G  +H   V    L       L I
Sbjct: 498 PFYAEMGGQVADHGQILDATGN-LVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAI 555

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++I
Sbjct: 556 DTNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAI 615

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCG
Sbjct: 616 EQQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCG 670

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754
           GTHV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q  
Sbjct: 671 GTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLK 730

Query: 755 NVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKEL 809
            V  +VE + E+ R+LQ  +A  K K            + +VN   +I+S+V   D+  L
Sbjct: 731 EVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIVSQVSVSDAGAL 790

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           ++  D  ++K  S +++LV    +K  +++   T+D+    +A +L +  A ++  G GG
Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNALVASKTKDI----HAGNLVKELAPIV-DGRGG 845

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+P MA +GG N  K  + +  VA  L
Sbjct: 846 GKPDMAMAGGSNQAKIQELLEAVAGKL 872


>gi|262283148|ref|ZP_06060915.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261400|gb|EEY80099.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 872

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 346/927 (37%), Positives = 504/927 (54%), Gaps = 86/927 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQMSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       R     LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRIEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           PFYAE GGQ+ D G    A G+ +   +TDVQK   G  +H   V    L       L I
Sbjct: 498 PFYAEMGGQVADHGQILDATGN-VVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAI 555

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++I
Sbjct: 556 DTNRRHCVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAI 615

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCG
Sbjct: 616 EQQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCG 670

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754
           GTHV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q  
Sbjct: 671 GTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLK 730

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKEL 809
            V  +VE + E+ R+LQ  +A+ K +              K+    +++  +S  D+  L
Sbjct: 731 EVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKKVKGHRYIASQVSVSDAGAL 790

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           ++  D  ++K  S +++LV    +K   ++    +D+    +A +L +  A ++  G GG
Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKAKDI----HAGNLVKELAPIV-DGRGG 845

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+P MA +GG N  K  + +  VA  L
Sbjct: 846 GKPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|328881150|emb|CCA54389.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 889

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 346/921 (37%), Positives = 515/921 (55%), Gaps = 76/921 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   ++V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFSRASSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTPVEHGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY ED+EA ++W+ + G+ A++I R+   DN+WSM   GPCGPCSEI +D+
Sbjct: 119 LEPEKLWITVYQEDDEAEQIWRDVVGVPAERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233
           G    G   G +   ERY+EIWNLVFMQ+E  + + ++ F     LP  +IDTG+GLER+
Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGSGKDDFPILGELPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ D  + +I  +  +TG+ Y    ++ V+ RV+ DH+R+S  LI DG+ 
Sbjct: 238 AMILQGVQNMYETDTLQVVIDKATALTGVAYGKAHDSDVSLRVVADHMRTSVMLIGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRIMRRA+   RLLG + P++  L+  +   MG  YPELI  +  IE   
Sbjct: 298 PGNEGRGYVLRRIMRRAVRNMRLLGASGPVVGELVDTVINTMGEQYPELITDRKRIETVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F K L  G  +LD  ++        +L+GD AF L+DT G P+D+  ++   +G
Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMASEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY    G   
Sbjct: 418 LS-VDEDGFRRLMKEQRDRAKADAKAKKTGHADMTSYREIADSNGATEFTGYTNTEG--- 473

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
              +  V+       L NGVSS              A  G +VEVV D+TPFYAE GGQ+
Sbjct: 474 ---ESTVVGL-----LVNGVSSPA------------ASEGDEVEVVLDRTPFYAEGGGQI 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G   +  G  +++ DVQ+   G+ VH   V+ G +    +   TID + RR ++  H
Sbjct: 514 ADQGRIKLHSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGATAYATIDVRRRRAIARAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      +  A L  +E  +N+++++ L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPNAVPGAVLTDVEQKINEVLSREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A  G KY ++VRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 EVHAEVMPIDEAKRQGAIAEFGEKYGEKVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K       GR EE+ E+ 
Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKI 741

Query: 768 -----------RKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISE-VDSKELKSVMD 814
                      ++++   A++ LQ     + S   I  V  ++  + +   + +L+ ++ 
Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLVDSAQDIRGVALVTGQVPDGTGADDLRKLVL 801

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871
            ++ +I  G   +V +        L V+  +   R     A +L R +AK L GGGGGG+
Sbjct: 802 DVRGRISGGRPAVVALFTTANGKPLTVIATNEAARERGLKAGELVRTAAKTL-GGGGGGK 860

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           P +AQ GG N     +AIA V
Sbjct: 861 PDVAQGGGQNPEAVGEAIAAV 881


>gi|261880084|ref|ZP_06006511.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270333239|gb|EFA44025.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 886

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 338/940 (35%), Positives = 492/940 (52%), Gaps = 102/940 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RTNSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEFLVDVLHL 120

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D   LY+TV++         D+EA K W K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPADLYVTVFEGSPEENIPRDDEAAKYWSK--HLPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + IEIWN+VFMQF +++      L    IDTGM
Sbjct: 179 SEIHIDSRPAEEKAKKPGRELVNMDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH-------R 273
           G ER+  +LQ K +NYD D+F+ +I+  E  +G KY        +G    N        R
Sbjct: 239 GFERLVRMLQGKNSNYDTDIFQPIIKEIEIHSGKKYGFTTPSGKDGKAADNQEKIDIAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           VI DHLR+ +F IADG LP N   GYV+RRI+RRA+ YA   L      M  LLP L  E
Sbjct: 299 VIADHLRTVAFSIADGQLPGNAKAGYVIRRILRRAVRYAYTFLDQRHAFMFKLLPVLIQE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFK 389
           MG  YPEL   + LI   ++ E++ F +TL++G+ LL+G +  L   GK + L+G  AF+
Sbjct: 359 MGGTYPELPAQQELISRVMKEEEDSFLRTLEKGIQLLNGDMEELREQGKTQ-LDGTKAFR 417

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    GL+ +D   FN  + +Q+ RAR       +      W  LK
Sbjct: 418 LFDTYGFPLDLTELICRENGLS-VDEQGFNAQMTKQKERARN-----AAAVENSDWVVLK 471

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G  +F+GYD       +   RKV  +K                              
Sbjct: 472 E--GEQEFVGYDYTEYECNITRYRKVTQKKKSF--------------------------- 502

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT-- 567
             EV+ D TPFY E GGQ+GD G  + +   + + D  K+     VH       I+RT  
Sbjct: 503 -YEVMLDHTPFYGEMGGQVGDQGVLVNEAETIDVIDT-KRENNQSVH-------IIRTLP 553

Query: 568 ---EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                  +  +D   R   + NH+ATHLL +AL  +LG HV Q GS ++ D LRFD  H 
Sbjct: 554 KDPNAGFMACVDTDKRTASAANHTATHLLDYALKKVLGDHVEQKGSYVSADTLRFDFAHF 613

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           + +T  EL+ +E  VN ++ ++ P+   R    E+A   GA AL G KY D+VRVV    
Sbjct: 614 QKVTDEELREVERLVNRLVREDHPMDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFG- 672

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                 S   CGG H  STG I +  I+SESS+ AG+RRIEA+TGQ+    +   ++ ++
Sbjct: 673 -----PSCEFCGGIHAKSTGCIGMFKILSESSVAAGVRRIEAMTGQKCEEAMYTLEDTVR 727

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSH 799
            +      S+ ++   +E+  EE    Q+       +    D +   +A+    VN M+ 
Sbjct: 728 YIKGVFNNSK-DLKSTIEKFIEE--NAQMKKEMESFRSQAVDRTAKTLAERVQTVNGMNV 784

Query: 800 I--ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDL 855
           +  +  V     K ++  +++ I + +I ++G     K  + ++++ED++     NA  +
Sbjct: 785 VKAVIPVQPASAKDIVFKIRELIPANLICVIGSVYNDKPMLSVMLSEDMVKEHNLNAGQM 844

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            R +AK++  GGGGG+PH AQ+GG N +    A+  V   
Sbjct: 845 VREAAKLI-QGGGGGQPHYAQAGGKNKDGLSVAVDKVVEL 883


>gi|168487382|ref|ZP_02711890.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183569764|gb|EDT90292.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 872

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|225860836|ref|YP_002742345.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727156|gb|ACO23007.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389569|gb|EGE87914.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
          Length = 872

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 345/925 (37%), Positives = 507/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       + A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNHNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|255039401|ref|YP_003090022.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254952157|gb|ACT96857.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 886

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 339/930 (36%), Positives = 501/930 (53%), Gaps = 103/930 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+   H ++PS+ L+  NDPTLMF NSGM  FK+ F G   P  + +   QK
Sbjct: 6   IRQAFLDFFRSKEHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSRRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT  + L + RLY
Sbjct: 66  CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTDVYKLPKDRLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V++         D+EA+ LWK I G   ++II     DNFW M +TGPCGPCSEI  D
Sbjct: 126 VSVFEGNEADGVPFDQEAWDLWKGIVG--EERIILGNKKDNFWEMGDTGPCGPCSEIHID 183

Query: 179 -QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            +       + G S    +  + +EIWNLVFMQFE++       LP   +DTGMG ER+ 
Sbjct: 184 LRSPAEVAEVSGKSLVNNDHPQVVEIWNLVFMQFERKADGSLIPLPSTHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGI 290
             +Q+KT+NYD D+F++ I   E ++G KY  N+     +  RVI DH+R+ SF I DG 
Sbjct: 244 MAIQQKTSNYDTDVFQNTINVLETLSGKKYGQNDEPFADIAMRVISDHIRAVSFAITDGQ 303

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N   GYV+RRI+RRA+ Y    LG+ EP    L+P L  +    + EL   +  +  
Sbjct: 304 LPSNVKAGYVIRRILRRAVRYGYSYLGFQEPFFHKLVPVLAEQFKDVFTELKDQEEFVTR 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN---GDVAFKLYDTHGLPLDIMQDILC 406
            +  E++ F +TL+ GL  LD ++  L K+  LN   GD  F+L DT G P+D+   I  
Sbjct: 364 VILEEEKSFLRTLESGLKRLDSIIGGL-KETGLNTIPGDEVFELSDTFGFPVDLTALIAR 422

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +    ID   +  AL EQ+ R+R  +    +      W  L+E  G  +F+GYD     
Sbjct: 423 EKNFR-IDEAGYQDALAEQKKRSRQDAAKEATD-----WIELRESDG-VEFLGYDFEETH 475

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RKV  +                            +G++  +V D+TPFYAE GG
Sbjct: 476 SHIVKYRKVKTK----------------------------AGEEYHIVLDRTPFYAEMGG 507

Query: 527 QLGDTGCAI------GDGIR-LQITDVQKKAEGIFVH--------HAIVERGILRTEMSL 571
           Q+GDTG  +       DG R + I D  KK   +FVH         A+   GI+  +   
Sbjct: 508 QVGDTGALLLNSGSKEDGARSISIVDT-KKENDLFVHISRDKNLDEALSGAGIVTAQ--- 563

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+ + R ++  NH+ATHL+  ++  +LG+HVSQ GS +  + LRFD  H   +T  E
Sbjct: 564 ---INVERRNKIKSNHTATHLMLSSMREVLGTHVSQKGSYLNDEVLRFDFAHFSKVTDEE 620

Query: 632 LKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           L+ IED VN+ I +N+ +  R  +  + A+ +GA A  G KY D VR++  + +     S
Sbjct: 621 LRKIEDRVNEKIRENIALEERRNVPIQQALDAGATATFGEKYGDFVRLIIFDPK----FS 676

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV STGEI +   +SE S+ AG+RR+EA+TG++A   +  Q+E L  +   LK
Sbjct: 677 FELCGGTHVPSTGEIGVFKFISEGSVSAGVRRVEAVTGEKALELMRQQEETLNKIKDLLK 736

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSH-----IISEV 804
               +++  VE + EE   LQ    K+   L  E +   K   V N  +H     I+ +V
Sbjct: 737 -GPTDLIKAVENLIEERSALQ----KKISALENEKIQALKTTLVENMETHSTFNLIVQKV 791

Query: 805 D---SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLS 859
           D   +  LK +   L+ ++++ +I + G     K  + + + E+++     NA  + +  
Sbjct: 792 DVPSADSLKQLSYELRDQVEN-LIAVFGAEIGGKPQLSVFIAENIVAETGLNAGKIVKDL 850

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           A+ +  GGGGG+P  A +GG + +  D A+
Sbjct: 851 AREI-RGGGGGQPFFATAGGSDASGLDVAL 879


>gi|313115845|ref|ZP_07801279.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621843|gb|EFQ05364.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 887

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 342/915 (37%), Positives = 509/915 (55%), Gaps = 53/915 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LT +    
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + RL+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+
Sbjct: 120 IPKDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E++    Y  +    ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QGVGNLFEVDTVQSVLHHVERIANKTYGEDDKTDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG T P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGITRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K  + +L G   FKL DT G PLD+ ++I   +G+  I
Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F+  + +Q+ RARA  L    SG +E ++ +L  +   T F GY+ L  +      
Sbjct: 418 DEEGFHAEMTKQKERARAERLKKNISGWSEDLFGALNAE--PTVFTGYETLNDTGV---- 471

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             V+       LT+ +++            EEA  G  V VV D+TPFYAE GGQ  D G
Sbjct: 472 --VVALSDEETLTDAIATD-----------EEAKDG--VLVVLDKTPFYAEMGGQAADHG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   L++ DV+K  +G +VH  ++E GI++    L   +D + R  ++ NH+ATHL
Sbjct: 517 MLNSADCSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLTAQVDKEYRMAIARNHTATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS    +   FD TH   +T  EL  ++  VND I +++ V  R
Sbjct: 577 LQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTVR 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I    IVS
Sbjct: 637 EMPIEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIVS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRK 769
           E+S+ AGIRRIEA+TG+        Q+  L ++AS LK +  NV     R E +  E + 
Sbjct: 692 EASVAAGIRRIEAVTGRNLLIRANLQEAMLHTVASTLKAN--NVTALPVRAEAVMAENKA 749

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ-KKIQSG 823
           L     + K Q+    ++       +I  V   S   +      L+ + D ++ K ++  
Sbjct: 750 LAKELEEIKAQVAASKVTSLFDNAEEIGGVKIASAYFTGTTGDTLRGMCDTIRDKAVKPA 809

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           + +LVG   E K ++ + VT+   ++             + GG GGG+P  A +G  +  
Sbjct: 810 VAVLVG-KAEDKITMAVTVTKQAQEKGLKAGALVKEIAAIAGGKGGGKPDFAMAGLKDET 868

Query: 884 KADQAIAGVASFLKK 898
           K D+A+A V++ +KK
Sbjct: 869 KIDEALAAVSAIVKK 883


>gi|218281062|ref|ZP_03487629.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989]
 gi|218217684|gb|EEC91222.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989]
          Length = 876

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 333/911 (36%), Positives = 496/911 (54%), Gaps = 61/911 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F+  GH + P +SLIP NDPTL++ N+G+   K  F G EKP    +   
Sbjct: 7   NQIRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPASNRIANA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVGRT RHHTFFEMLGNFS G YFK+ AIQ AW+ LT E    +D+
Sbjct: 67  QKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKDEAIQFAWEFLTSEEWMGIDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY++VY +D  A+++W  I G+    I++  T+DNFW + + GP GP SEIFFD+GE 
Sbjct: 123 DRLYVSVYTDDARAYEVWTTICGVDPSHILK--TDDNFWEIGK-GPGGPDSEIFFDRGEK 179

Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234
             P GL         E +RY+E+WN+VF Q++     ++++   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPEGLGEKLFFDEMENDRYVEVWNVVFSQYDCDPSIDRKDYKELPQKNIDTGMGLERLV 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q+   N+D DLF  +I+A+E +    YEG   + +RVI DH+R+ +F ++DG   +N
Sbjct: 240 ALVQDGETNFDTDLFLPIIRATEAMAKHPYEGEYKMAYRVIADHVRTVTFALSDGANFSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRR++RRA+ Y   LG  EP +  L+P +   M   YP L +     ++ ++ E
Sbjct: 300 SGRGYVLRRVLRRAVRYGLKLGLDEPFLYKLVPVVADLMEDFYPYLQEHVEFNQKLIKVE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F KTL  G  LLD  +S   KD  L+G+V FKLYDT+G P ++ Q+I    G+  + 
Sbjct: 360 EETFKKTLKVGQALLDDEISK-AKDGKLSGEVVFKLYDTYGFPFELTQEIAEESGIT-VS 417

Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F+  + +Q+ RAR A ++     +  +   +  E    ++FIGYD L          
Sbjct: 418 HEDFDAQMNKQKERARNARNVKDSFASQNEELMNFNE---PSEFIGYDHL---------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
              C    I L N    +V ++  +G I+             D+T FYAE+GGQ+ D G 
Sbjct: 465 --TCDGKIIALFNAEGKMVDSLEDEGMII------------LDKTCFYAESGGQVADKGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              DG+ +++ DVQK      +H   +  G+L   MSL   ++ ++R   + NHS THLL
Sbjct: 511 FSADGVDVEVLDVQKTRNKQHIHTVKINGGVLEKGMSLHGEVNVKDRLATTANHSCTHLL 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG H+ Q GS   P+ LRFD  H + +T+ +L  +E  VN+ I+   PV   I
Sbjct: 571 QSALVKVLGDHIHQAGSYNCPEYLRFDFNHYEKVTAEQLAEVERIVNEYISAAYPVTKEI 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  E+A  SGA AL   KY D VRVV++     G  S   C G HV +T +I L  I+SE
Sbjct: 631 MPIEEAKKSGATALFDEKYGDTVRVVTM-----GDVSKEFCAGCHVENTAQIGLCKIISE 685

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQ 771
            SI +  RRI A T   A      +   L+++A   K  +G  N+  +VE  ++    +Q
Sbjct: 686 ESIGSDSRRITAKTKFAAYQDFASEHAMLENIADSAK-QKGIKNIDTKVEAAYKTMHDMQ 744

Query: 772 -----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                L +    L+             VN +   +S +D+  LK ++  L+      ++ 
Sbjct: 745 KEIDNLKNQIFTLKSKEWATEAKDFGKVNVLIKSVSGMDAGALKDIVSNLKANDDKMVVF 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            V  + EK   V     E +    +A  L + +A++   G GGG+P MAQ+GG + +K D
Sbjct: 805 FVNTNGEKVVFVSGAGKEAVKAGVHAGQLVKKAAQIC-SGNGGGKPDMAQAGGKDASKVD 863

Query: 887 QAIAGVASFLK 897
           +AI  +   LK
Sbjct: 864 EAINAITEELK 874


>gi|24379123|ref|NP_721078.1| alanyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|41018215|sp|Q8CWY0|SYA_STRMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24377026|gb|AAN58384.1|AE014908_10 putative alanyl-tRNA synthetase (alanine--tRNA ligase)
           [Streptococcus mutans UA159]
          Length = 872

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 347/916 (37%), Positives = 513/916 (56%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++   H + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FDL +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPEWFDLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIE-CGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 182 ----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNM-SFKVIADHIRSLSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  EP +  L+P +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKIVK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+E F +T+D G  +LD +L+ L     + L G   F+LYDT+G P+++ +++    G 
Sbjct: 358 REEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELAEDAGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F  A++EQ+ RARA+ +  GS G   +   ++ EK              S F 
Sbjct: 418 K-IDHQGFQAAMKEQQERARANVVKGGSMGMQNETLSNITEK--------------STFN 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            E       K  +D     SS+   I     I  EAVS  +V +VF +TPFYAE GGQ+ 
Sbjct: 463 YE-------KEALD-----SSLSVIIADNKRI--EAVSEGQVLLVFSETPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++TDVQK   G  +H   V  G L    +  L ID++ R ++  NH
Sbjct: 509 DHGLIKNDKGDTVARVTDVQKAPNGQALHTVDV-LGSLSVGTTYHLEIDHERRNRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I + +
Sbjct: 568 TATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIWKAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL G KY   VRVVS+     G +S  LCGGTH+ +T EI +
Sbjct: 628 PVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK +A+ LK  Q N V  +V  + ++
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIATTLKAPQMNQVANKVASLQDQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +A  K K            + +VN + +I S+V   D+  L++  D  ++K  
Sbjct: 743 LHKLQKENAELKEKAAAVAAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADKWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++LV  S  KK +VL+   ++D+    +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 803 SDVLVLVA-SIGKKVNVLVASKSKDI----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           + +     IA VA  L
Sbjct: 857 DASAIKDLIAAVAENL 872


>gi|225428201|ref|XP_002278951.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera]
          Length = 1006

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/917 (37%), Positives = 513/917 (55%), Gaps = 90/917 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           SIR  FL+F+   GH++LPSSSL+P +DPT++ T +GM+ FK IF G+        TT Q
Sbjct: 111 SIRHRFLDFYASRGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKVPRQVPRATTAQ 169

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           +C+R     ND++NVG+T+RHHTFFEMLGNFSFG YFK+ AI+ AW+L T E+ L   RL
Sbjct: 170 RCIRT----NDVENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLPADRL 225

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +I+VY++D+EA  +W K  G+  ++I R+   DNFW+   TGPCGPCSEI++D     P 
Sbjct: 226 WISVYEDDDEALAIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYD---FHPE 282

Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                 + G+  R+IE +NLVFMQ+ +++      L +M+IDTG+GLERMA +LQ+  NN
Sbjct: 283 RGYSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNN 342

Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   +I+ + ++  + Y   + +  +N +VI DHLR+  +LI+DG++P+N GRGYV
Sbjct: 343 YETDLIYPIIEKASELANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRGYV 402

Query: 301 LRRIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PELIQAKLLIEETLR 352
            RR++RRA+   RLLG         E   +  +     E+ S   P++      I E L+
Sbjct: 403 ARRLIRRAVRTGRLLGIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEELK 462

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E+ RF +TL+RG  LLD +L++        G   IL+G   F LYDT+G P++I  +  
Sbjct: 463 REELRFVQTLERGEKLLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTEAA 522

Query: 406 CARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
             RG+ GID+  F   +E QR +++A  +++ L  G +      L E    T+F+GY+ L
Sbjct: 523 EERGV-GIDMNGFEIEMENQRRQSQAAHNAVKLAVGNSA----DLTENISDTEFLGYETL 577

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     ++++ ++  G  V +   G  VE+  ++TPFYAE
Sbjct: 578 -----------------------STKAVIEGLLVNGNPVIQVSEGSDVEIFLNRTPFYAE 614

Query: 524 AGGQLGDTGCAIGDGIR------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           +GGQ+GD G    +  R      ++I DVQK    IFVH   ++ G++     +   +D 
Sbjct: 615 SGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTIKEGVVEVGKEVEAAVDA 674

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R++  I+H+ATHLL  AL  ++G   SQ GS +  D LRFD    +P+   EL  IE+
Sbjct: 675 NLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFDFNFHRPLQEKELVEIEE 734

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N  I     + T++M   DA  +GA A+ G KY ++VRVV V     GV S  LCGGT
Sbjct: 735 LINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVEVP----GV-SMELCGGT 789

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D  ++ L S LKV    V 
Sbjct: 790 HVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQLCSTLKVKAEEVT 849

Query: 758 GRVEEIWEEYR----KLQLIHAKRKL-QLNVEDLSCHKIA---DVNFMSHIISEVDSKEL 809
            RVE + EE R    ++  + AK  + + +V   +   +     +  +   + ++D+  L
Sbjct: 850 TRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVLVESMDDIDADSL 909

Query: 810 KSVMDALQKKIQSGIIMLVG-ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---- 864
           KS  + L   +Q    +++G    E+K S++   T  +      VDL   + K +G    
Sbjct: 910 KSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGV------VDLGIQAGKFIGPIAK 963

Query: 865 --GGGGGGRPHMAQSGG 879
             GGGGGGRP+ AQ+GG
Sbjct: 964 LCGGGGGGRPNFAQAGG 980


>gi|260061769|ref|YP_003194849.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88785901|gb|EAR17070.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 871

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 355/918 (38%), Positives = 521/918 (56%), Gaps = 79/918 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ FL FF+  GH ++PS+ L+  +DPTL+F N+GM PFK  F G   P Y  V   QK
Sbjct: 6   IRSRFLTFFKDRGHRIVPSAPLVVKDDPTLLFVNAGMNPFKEYFLGVSNPKYPRVADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE  I  AW+ LT+   +D+ RLY
Sbjct: 66  CLRVSGKHNDLEEVGRDTYHHTLFEMLGNWSFGDYFKEETIGWAWEFLTEVCGIDRDRLY 125

Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           +T++         + D+EA+  WK I  L  D+I+  +  DNFW M + GPCGPCSEI  
Sbjct: 126 VTIFEGSSDADALERDQEAYDFWKAI--LPEDRILMGSKKDNFWEMGDQGPCGPCSEIHV 183

Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D + E      PGS   +++    +EIWNLVF+Q+ ++       LP+  IDTGMG ER+
Sbjct: 184 DIRPEEERRKTPGSELVNQDHPEVVEIWNLVFIQYNRKADGSLEPLPEKHIDTGMGFERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290
             VLQ   +NYD DLF  LI+   ++TG  Y   E ++I   RVI DH+R+ SF IADG 
Sbjct: 244 CMVLQGVRSNYDTDLFTPLIREIGKITGKDYGQSEEDDIAI-RVIADHIRAVSFTIADGQ 302

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP N G GYV+RRI+RRA+ Y    LG  EP M  L+  L  EMG A+PEL + + L+E 
Sbjct: 303 LPGNSGAGYVIRRILRRAIRYGFTFLGAREPFMFRLVGTLVAEMGEAFPELAEQRRLVEN 362

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +R E+  F KTL++GL  LD V++   + + ++G  AF+LYDT G P+D+   IL  RG
Sbjct: 363 VVREEEVSFLKTLEQGLARLDAVIAET-RGKTVDGGRAFELYDTFGFPIDLTSLILRERG 421

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D   F+ A++EQ+ R+RA      S +  + W  +     A++F+GYD L     +
Sbjct: 422 YE-LDRQGFDAAMKEQKDRSRA-----ASESAAEDWVKVHPG-PASEFVGYDALEARSRI 474

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           ++ RKV  +K                           +G   ++V D TPFY E GGQ+G
Sbjct: 475 RKYRKVESKK---------------------------TGTLYQLVLDTTPFYPEGGGQVG 507

Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D+G   G G  + +I D +K+   I  +  A+ E          +  +D + R+Q   NH
Sbjct: 508 DSGHLEGSGGAVTEILDTRKENNEILHITEALPE----DPGAEFLAVVDAERRKQTRRNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LGSHV Q GS + P  LRFD +H   +   EL+ +ED VN+ IA  L
Sbjct: 564 TATHLLHQALREVLGSHVEQKGSAVQPGYLRFDFSHFSKLKDEELRRVEDFVNERIADGL 623

Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            V + + +  ++A+ +GA AL G KY D VR  +V + D    S  LCGGTH  +T EI 
Sbjct: 624 DVEIKKGVPMQEALEAGAMALFGEKYGDTVR--TVRFGD----SIELCGGTHADNTAEIW 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I+SES++ AG+RRIEAIT    R +   ++  L+++ + LK +Q + +  VE + EE
Sbjct: 678 HFKILSESAVAAGVRRIEAITSDAVREYFADKERVLEAIRTRLKNAQ-DPLQAVESLQEE 736

Query: 767 YR--KLQLIHAKRKLQLNVE-DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
               K +L   KR+   N++ DL  +  K   V+F++  + ++D+  +K +   L  +++
Sbjct: 737 NAGLKKELERLKREQAGNLKGDLKSALDKRDGVHFLARQV-DLDASSMKDLAFQLGGEVE 795

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             + +L+G  ++ KA + + +++ L      NA  + R   K +  GGGGG+P  A +GG
Sbjct: 796 D-LFLLLGSEQDGKALLTLYISKGLAAEKDLNAGAIIRELGKHI-QGGGGGQPFFATAGG 853

Query: 880 PNGNKADQAIAGVASFLK 897
            N +   +A+   AS+L+
Sbjct: 854 KNPSGIGKALEAAASYLQ 871


>gi|313676999|ref|YP_004054995.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312943697|gb|ADR22887.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 876

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 326/882 (36%), Positives = 498/882 (56%), Gaps = 71/882 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL FFQ+  H+++PS+ ++  +DPTLMFTN+GM  FK+ F G +      VT  
Sbjct: 4   SEIRKKFLNFFQEKEHKIVPSAPMVIKDDPTLMFTNAGMNQFKDYFLGNKVAEATRVTDT 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ +W+LLT  F L + R
Sbjct: 64  QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWSWELLTDIFKLPKER 123

Query: 125 LYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+TV++         D+EA+  WK    +   +I++   NDNFW M +TGPCGP SEI 
Sbjct: 124 LYVTVFEGDKADGIPFDQEAYDFWK--GHIDESRILKGDKNDNFWEMGDTGPCGPASEIH 181

Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            D + E     +PG    + +    +EIWNLVF+QF ++       LP   IDTGMG ER
Sbjct: 182 VDLRDEADIAKIPGKDLVNNDHPLVVEIWNLVFIQFNRKADGSLHALPAQHIDTGMGFER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGI 290
           +   +Q K +NYD D+F  L+    +++G KY E + I +  RVIVDH+R+ S  I+DG 
Sbjct: 242 ICMAIQNKKSNYDTDVFTPLLDELAKISGKKYGELSKIDIAFRVIVDHIRAISLSISDGQ 301

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N   GYV+RRI+RRA+ Y    L   EP +  L+P L  +    +PEL   + L+E+
Sbjct: 302 LPSNNKAGYVIRRILRRAVRYGYTFLDLKEPFLFKLVPILAKQFEEVFPELKAQQELVEK 361

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++ E+  F +TL+ GL  L+ + + L    +  ++G VAF+LYDT+G PLD+   I   
Sbjct: 362 VIKEEETAFLRTLENGLKRLESIKAELSSSGNATISGAVAFELYDTYGFPLDLTALIAKE 421

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D   F QA+ EQ++R+++ +  + +G     W  + E     +F+GYD ++   
Sbjct: 422 NGLT-VDEKGFEQAMNEQKNRSKS-AAKMETGD----WQIVNEGRD-VEFVGYDEVKA-- 472

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
               D K+L  +    + N                    + +++++V D+TPFYAE+GGQ
Sbjct: 473 ----DAKILRYRS---VKNK-------------------NKEQIQLVLDKTPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG        +++ D  KK   + VH   V++   + +  +   ID   RR++  NH
Sbjct: 507 IGDTGILKVSNETIKVLDT-KKENDLIVH--FVDKIPAQLDAKVHAQIDNDRRRKIVYNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG HV Q GS ++   LRFD +H   +T  E+  +E  VN+ I +N+
Sbjct: 564 SATHLVHAALREVLGDHVQQKGSLVSDKLLRFDFSHFSKMTDEEILKVERRVNEKIRENI 623

Query: 648 PVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P    R +  E+A A GA AL G KY D VR+++ +      +S  LCGG HV +TG I 
Sbjct: 624 PQQEERNIPIEEAKAKGAMALFGEKYGDTVRMITFDPN----YSVELCGGVHVPATGNIG 679

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I +E+S+ AGIRRIEA+TG++A  + + Q+  LK + + LK S  ++   VE++ +E
Sbjct: 680 QFKITTETSVAAGIRRIEAVTGEKAEEYHLDQEAILKQVNALLK-SPKDLAQAVEQLMKE 738

Query: 767 YRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             +LQ  L   + K    ++D         N +S IISE+   ++  LK +   L+ ++ 
Sbjct: 739 KNELQKSLEKEQSKQAGALKDELIKNAEKQNDISVIISEIALPNADALKKLSFELKNEVD 798

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAK 861
           S +  ++    + K  + +V++E+L++    NA  + R  AK
Sbjct: 799 S-LFAVLACDVDGKPQISVVISENLVESKDLNAGKIIRDLAK 839


>gi|269795075|ref|YP_003314530.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
 gi|269097260|gb|ACZ21696.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
          Length = 895

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/921 (37%), Positives = 510/921 (55%), Gaps = 71/921 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L +F+  GH ++PS+SL+   DP+ +FT +GMVPF    TGQ+   ++  T+V
Sbjct: 4   AEIRQRWLTYFEDRGHTVVPSASLV-SPDPSTLFTIAGMVPFIPYMTGQQTAPWKRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AWD +T   D     
Sbjct: 63  QKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEEAIAYAWDFITGSVDDGKLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   +++TV+ ED+EA ++WK+++GL+ ++I      DNFWS    GP GPCSEI+ D+
Sbjct: 119 FDPELVWVTVFHEDDEAREIWKRVAGLTDERIQSRGMRDNFWSTGARGPAGPCSEIYIDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM------SIDTGMGLERM 233
           G    G   G   + +RYIEIWNLVFMQFE+ +   +   P +      +IDTGMGLER+
Sbjct: 179 GPEY-GAEGGPVVDEDRYIEIWNLVFMQFERADGGTKDDFPILGPLASRNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290
           A +LQ   N Y+ID    +I+ +++++G  Y   E ++ V  RV+ DH+RS+  LI DGI
Sbjct: 238 AFLLQGVDNMYEIDEVFPVIEVAQRLSGKTYGAVEADD-VRMRVVADHIRSAVMLIGDGI 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRR++RR++   RLLG  EP +  L+PA    M ++YPEL +    I   
Sbjct: 297 RPSNEGRGYVLRRLIRRSVRAMRLLGVEEPALPALVPASIEVMKASYPELGEGSDRILSI 356

Query: 351 LRSEDERFGKTLDRGLVLLD----GVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDIL 405
             +E+E F +TL  G  +L+      LS  G  + +L G  AF+L+DT+G P+D+  ++ 
Sbjct: 357 ALAEEEAFRRTLTAGTTILETAVGSALSTSGPGKAVLGGAEAFQLHDTYGFPIDLTLEMA 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGA-TQFIGYDLL 463
              G+  +D  +F   ++EQR+RARA +L   SG  +K  + +L+   GA  +F+GY   
Sbjct: 417 SEHGVT-VDETAFRTLMQEQRTRARADALAKRSGGADKAAYEALQTGLGAPVEFLGYTD- 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                T   S+IV  IV  G     A +   VEV+ D+TPFYAE
Sbjct: 475 ---------------------TTARSTIVGLIVD-GVPGPVATAPATVEVILDRTPFYAE 512

Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + DG   +++ DVQ   +G+ VH   V  G++    S   TID   R+ 
Sbjct: 513 AGGQLADQGTIVLDGGGTIEVDDVQAPIKGLSVHRGRVVDGVVTMGESGTATIDTARRKA 572

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S  HSATH++H AL   LG   +Q GS   P  +RFD   S+ + +  L  IE+ VN  
Sbjct: 573 ISRAHSATHMIHKALQESLGKDATQAGSENAPSRIRFDFRSSQAVPTGALAEIEERVNTQ 632

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +A++L V  ++MN ++A A GA AL G KY DRVRVVS+    GG  S  LC GTHV  +
Sbjct: 633 LAEDLEVTEQVMNIDEARALGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVKRS 688

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GN 755
           G++ L+ ++ E+SI +G+RR++A+ G  A      +   +  L   L V         G 
Sbjct: 689 GQLGLVTLLGEASIGSGVRRVDALVGDGAYGFQAKEHALVGQLTGMLNVRTEELPDRIGG 748

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK-ELKSVMD 814
           ++ R++E  +E   ++               S   + D   ++H   EV S  +L+++  
Sbjct: 749 LITRLKEAEKELAAVRQGQLLAAAGQLA--ASAEMVGDARVVTHDAGEVASADDLRALAL 806

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871
            ++ ++      +V ++   K   L+VV  +   R     A    + ++ VL GGGGGG+
Sbjct: 807 DVRGRLGESAPTVVAVAGVSKDRPLVVVVTNATARERGLKAGAFVKAASGVL-GGGGGGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
             MAQ GG +      A+AG+
Sbjct: 866 DDMAQGGGQDVTAVPAALAGL 886


>gi|237785598|ref|YP_002906303.1| alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758510|gb|ACR17760.1| Alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 886

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 334/915 (36%), Positives = 498/915 (54%), Gaps = 59/915 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   T++QK
Sbjct: 6   IRERFTEHFVKAGHTSVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFNTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           CVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW+LLT   D     LD
Sbjct: 65  CVRT----LDIDEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWELLTSSVDDGGFGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++T+Y +D+EA  +W    G+  ++I R+   DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PDRLWVTIYQDDDEAGDIWHDKIGIPRERIQRLGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMAT 235
              G   G   +  RYIEIWNLVFM+ E  +   +E F     LPK +IDTG+G+ER+A 
Sbjct: 181 EY-GKEGGPVVDDTRYIEIWNLVFMEKERGEGTGKENFEILGPLPKKNIDTGLGIERVAC 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E++TG  Y   +   V  RVI DH R++  LI DG+ P+
Sbjct: 240 ILQGVDNVYETDLLRPVIDVAEELTGAPYGARHADDVRFRVIADHCRTALMLILDGVAPS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+      I  T  +
Sbjct: 300 NEGRGYILRRLLRRIVRSARLLGATHETMERFMETVRRTMTPSYPEIEDNWERIRSTAVA 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+  F  TL+ G  L   +   L    + +  G  AF L+DTHG P+D+  ++   +GL 
Sbjct: 360 EERAFLATLESGEKLFTTIAEDLKARGETVFPGSDAFILHDTHGFPVDLTAEMANEQGLT 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++ +++Q++RA+A +     G      +       AT F GYD L       E
Sbjct: 420 -LDRDAFDRHMQDQKARAKADNRAKKHGHANLSVYRPFVDNHATVFTGYDTL-------E 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           D   +                  +V  G++VE+A  G  V+V+ D+TPFYAE+GGQ+ D 
Sbjct: 472 DEGTIL----------------GMVSNGQLVEKATEGDHVDVILDRTPFYAESGGQMADH 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G RL++ DVQK  + ++VH   V  G +   M +   +D Q R      HS TH
Sbjct: 516 GELSTAGARLKVNDVQKIGKKLWVHKTEVTGGEIAVGMKVEGKVDPQWRHAARQAHSGTH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG    Q GS   P  LRFD   ++P+T  +LK I+D  N  +  +  V T
Sbjct: 576 LIHAALRQVLGPTAVQAGSMNKPGYLRFDFNFNRPLTDGQLKDIQDIANSAVDADYTVNT 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + ++A   GA AL G  Y D VRVV +    GG  S  LCGGTHV    ++  + ++
Sbjct: 636 IETSLDEAKKMGALALFGQSYGDWVRVVEI----GGPFSMELCGGTHVDHASQVGPIAVL 691

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEY 767
            ESS+ +G RRIEA TG  +  +L  Q   L ++A+ LK    +V  RV++    + +  
Sbjct: 692 GESSVGSGARRIEAYTGMDSFRYLAQQQSTLTTVATSLKAPADDVPERVDQLAARLHDAE 751

Query: 768 RKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI--QSG 823
           R +   H ++ LQ   ++   H  ++ +V  ++  +S+V++K+L+ +   ++ ++  +  
Sbjct: 752 RAVARAH-QQALQSKADEFVAHAQRLNNVTVVAESVSDVEAKDLRPMALDVRNRLGNEPA 810

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L+  + +K   V+    +   +  NA  L +   + +  G GGG+P MAQ  G +  
Sbjct: 811 VVVLISSTGDKVPFVVSANEQATGNGINANSLVKTIGQSV-NGRGGGKPDMAQGSGSDAT 869

Query: 884 KADQAIAGVASFLKK 898
               A+  V   LKK
Sbjct: 870 GISHALDAVLDDLKK 884


>gi|325977827|ref|YP_004287543.1| alanyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177755|emb|CBZ47799.1| alaS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 872

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/916 (37%), Positives = 508/916 (55%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT    FD  +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                    L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G  +LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++   +G
Sbjct: 358 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA+ +  GS G   +   S+ E+              S F
Sbjct: 417 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             ED +VL             S +  I+   +  E    GQ + +VF +TPFYAE GGQ+
Sbjct: 462 SYED-EVL------------DSTLSVIIADNKRTEAVSEGQAL-LVFAKTPFYAEMGGQV 507

Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  N
Sbjct: 508 ADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDV-LASLSVGTTYTLEIDSKRRHRVIKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   
Sbjct: 567 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI 
Sbjct: 627 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           +  KLQ  +A+ K +            + + N + +I S+V   D+  L++  D  ++K 
Sbjct: 742 QLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L     EK   ++   ++D+    +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           +  K    +A VA  L
Sbjct: 857 DAAKIADLLAAVAENL 872


>gi|308184987|ref|YP_003929120.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308060907|gb|ADO02803.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 847

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 329/888 (37%), Positives = 495/888 (55%), Gaps = 61/888 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  ++I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y   +F+GY                     
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGY--------------------- 451

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
            + T  ++ ++       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D    
Sbjct: 452 -ETTECLAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDNEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 ALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A  
Sbjct: 569 GLHVSQAGSLVESKRLRFDFSHPKALNDEELERVEDLVNAQIFKHLNSQVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q    K  + +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
              DL   K+  V+ +  ++ + D KE+   +D L+ K +  + M+    KE +   L  
Sbjct: 738 ---DLPIEKVHGVSLVVGVVEQGDIKEM---IDRLKSKHEKLLAMV--FKKENERITLAC 789

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             ++   + NA   A   A++L GG GGGR   A +GG +  K   A+
Sbjct: 790 GVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834


>gi|148985664|ref|ZP_01818818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147922145|gb|EDK73267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800251|emb|CBW32870.1| alanyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 872

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESAFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELALII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|168491286|ref|ZP_02715429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183574430|gb|EDT94958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 872

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|306833055|ref|ZP_07466186.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304424764|gb|EFM27899.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 888

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 343/916 (37%), Positives = 507/916 (55%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 23  AQVRQIWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRITNA 82

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT    FD  +
Sbjct: 83  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 138

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 139 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 194

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                    L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 195 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 254

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 255 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 313

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ ++
Sbjct: 314 GNEGRGYVLRRLLRRAVMHGRRLGIKETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 373

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G  +LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++   +G
Sbjct: 374 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 432

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA+ +  GS G   +   S+ E+              S F
Sbjct: 433 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 477

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             ED +VL             S +  I+   E  E    GQ + +VF +TPFYAE GGQ+
Sbjct: 478 SYED-EVL------------DSTMSVIIADNERTEAVSEGQAL-LVFAKTPFYAEMGGQV 523

Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  N
Sbjct: 524 ADHGVIKNDKGDIVARVTDVQKAPNGQALHTVEV-LASLSVGTTYTLEIDSKRRHRVIKN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   
Sbjct: 583 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI 
Sbjct: 643 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 697

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E
Sbjct: 698 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 757

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           +  KLQ  +A+ K +            + + N + +I S+V   D+  L++  D  ++K 
Sbjct: 758 QLHKLQKENAELKEKAAAAQAGDVFEDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 817

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L     EK   ++    +D+    +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 818 YSDVLVLAAAIGEKVNVLVASKAKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 872

Query: 881 NGNKADQAIAGVASFL 896
           +  K    +A VA  L
Sbjct: 873 DAAKIADLLAAVAENL 888


>gi|320546404|ref|ZP_08040719.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448789|gb|EFW89517.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 891

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 341/915 (37%), Positives = 505/915 (55%), Gaps = 72/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 26  AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 85

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT    FD  +
Sbjct: 86  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPEWFDFPK 141

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 142 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 197

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                    L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 198 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 257

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 258 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 316

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ ++
Sbjct: 317 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFIEKIVK 376

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G  +LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++   +G
Sbjct: 377 REEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 435

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS + +    S             ++   S F 
Sbjct: 436 FK-IDHAGFEAAMKEQQERARASVVKGGSMSMQNETLS-------------NITEESVFS 481

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            E+ +VL             S +  I+   E  E    GQ + +VF +TPFYAE GGQ+ 
Sbjct: 482 YEE-EVL------------DSTLSVIIADNECTEAVSEGQAL-LVFAKTPFYAEMGGQVA 527

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R  +  NH
Sbjct: 528 DHGVIKNDKGDIVARVTDVQKAPNGQALHTVEV-LASLSVGTTYTLEIDSKRRHSVIKNH 586

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 587 TATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIWNAI 646

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV+T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI +
Sbjct: 647 PVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 701

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      ++E LK++A  LKV Q   V  +V  + E+
Sbjct: 702 FKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSLQEQ 761

Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +A+ K +            + + N +  I S+V   D+  L++  D  ++K  
Sbjct: 762 LHKLQKENAELKEKAAAAQAGDVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQKDY 821

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D+    +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 822 SDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKTLAPIV-SGRGGGKPDMAMAGGSD 876

Query: 882 GNKADQAIAGVASFL 896
             K    +A VA  L
Sbjct: 877 AAKIADLLAAVAENL 891


>gi|315613410|ref|ZP_07888319.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314645|gb|EFU62688.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 874

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 343/931 (36%), Positives = 512/931 (54%), Gaps = 92/931 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G    + +++ L   G++ I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +V   E   E VS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVVDNAEAEVETVSEGTASLIFAET 499

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  + +  ++   +TDVQK   G  +H   V    L  + +  L+ID
Sbjct: 500 PFYAEMGGQVADHGQILDESGKVVATVTDVQKAPNGQPLHTVEV-LAPLSLDKNYKLSID 558

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 559 KNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 618

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA +L G KY   VRVV++     G +S  LCGG
Sbjct: 619 QQVNEKIWEAIAVETVETDIDTAKEMGAMSLFGEKYGKEVRVVTI-----GDYSVELCGG 673

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 674 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 733

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H+     +++  +S  D
Sbjct: 734 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 788

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV  + + K +VL+      +   +A +L +  A ++  
Sbjct: 789 AGALRTFADNWKQKDYSDVLVLVA-AIDDKVNVLVASK---IKEVHAGNLVKELAPIV-D 843

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG N  K  + +  VA  L
Sbjct: 844 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 874


>gi|322389170|ref|ZP_08062731.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321144075|gb|EFX39492.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 872

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 345/931 (37%), Positives = 509/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPSVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G      ++  L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQTIVEDLKAKGQTVIAGQDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESSFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H+     +++  +S  D
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   ++   T+D+    +A ++ +  A ++  
Sbjct: 787 AGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNVIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG N  K  + +  VA  L
Sbjct: 842 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|307709086|ref|ZP_07645545.1| alanyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307620032|gb|EFN99149.1| alanyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 872

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 349/926 (37%), Positives = 506/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I     +  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEADMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGIASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  +     L   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDAAGNLVATVTNVQKAPNGQALHTVEV-HAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|167771374|ref|ZP_02443427.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM
           17241]
 gi|167666014|gb|EDS10144.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM
           17241]
          Length = 926

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 327/916 (35%), Positives = 505/916 (55%), Gaps = 61/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCND-PTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + ++ +R  FL FF+   H  LPS  L+P  D  +L+  NSGM P K  F G E P  + 
Sbjct: 50  TGLNELREKFLSFFESKEHLRLPSFPLMPSADEASLLLINSGMAPMKKWFLGLETPPRRR 109

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  A   AW+ +TK  ++
Sbjct: 110 VTTCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEFITKALEM 165

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+++VY++D+EA ++W K  G+   +I+R+   DNFW +  +GPCGPCSEI+FD+G
Sbjct: 166 PVDRLWVSVYEDDDEAEQIWTKEVGVDPSRIVRLGKEDNFWEIG-SGPCGPCSEIYFDRG 224

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  G   + +RY+E WNLVF QF+         +   +IDTGMGLER+A ++Q
Sbjct: 225 EQYGCGKPTCGVGCDCDRYVEFWNLVFSQFDGDGNGHYERMEHPNIDTGMGLERLACIMQ 284

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N +++D  +++++   ++ G++Y  +    V+ RVI DH+RS++F+++DGILP NEG
Sbjct: 285 GVDNLFEVDTVQNILKHVARIAGVEYHTDAKTDVSLRVITDHIRSTTFMVSDGILPQNEG 344

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG  EP +  +   +  E  +AYPEL++ +  I + ++ E+E
Sbjct: 345 RGYVLRRLLRRAARHGRLLGIHEPFLYQVCETVIQENANAYPELVEHRDYITKVIKVEEE 404

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           RF +T+D+G+ LL  ++  +  +   +I+ G  AF+LYDT+G P+D++++IL  R +  +
Sbjct: 405 RFARTIDQGMELLTAIIDKIDSEMDKKIMPGADAFRLYDTYGFPVDLIREILAERKIK-L 463

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + ++ Q+ RAR     LG    E+   +    +G  +F+GY  +          
Sbjct: 464 DEEEFARQMQAQKQRAREARAALGDLGWEEDVLADVADHG--RFVGYTEM---------- 511

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + + AI++  + V+E   G+   +V D TPFYAE+GGQ GD+G 
Sbjct: 512 -------------AAQAHIVAIIKDDKRVDELHDGELGSIVLDVTPFYAESGGQAGDSGL 558

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G    + D +K   G FVH   +  G L    S+   I+   R  +  NH+A HLL
Sbjct: 559 ISAGGNVFAVYDCKKSKTGHFVHIGELTAGTLAVGDSVSAAINVDRRADIMRNHTACHLL 618

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q G+       RFD +H   +T  ELK +E+ VN ++  ++ V    
Sbjct: 619 QAALRQVLGDHVHQAGAFYDDTICRFDFSHFSAVTPEELKRVEELVNRVVLASIDVSVSE 678

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A   GA AL G KY D VRV SV  E     S  LCGGTH+ +T ++ L  IV E
Sbjct: 679 MPIDEAKKLGAMALFGEKYGDVVRVCSVPGE-----SVELCGGTHLKNTAQVGLFRIVKE 733

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE----EIWEEYR 768
           SS+ AG+RRIEA+TG+     +  Q+  ++  A+ LKV     +  R E    E  E+ R
Sbjct: 734 SSVAAGVRRIEAVTGRNVLRLMDEQETTMEKTAAALKVGNLSELPARAEALNAESREQKR 793

Query: 769 KLQLIHAK-RKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +L+   AK  + QL     N + +    IA V  M    +++D+  L+ + D ++     
Sbjct: 794 RLEAAEAKLAESQLSGVFDNAQQVGGIYIASVAMMG---AKIDA--LRRMGDRVRDSRPD 848

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +     ++ + K S+L+V  +D + +             L GG GGGRP  A  G    
Sbjct: 849 AVCAFSTVN-DGKGSILVVCGKDAVAKGAHAGKIVKELTALCGGSGGGRPDNAMGGTSEI 907

Query: 883 NKADQAIAGVASFLKK 898
            + D+A+A + + + K
Sbjct: 908 FRIDEAMAQLPAIVGK 923


>gi|303236524|ref|ZP_07323109.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302483272|gb|EFL46282.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 897

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 331/935 (35%), Positives = 498/935 (53%), Gaps = 98/935 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 12  MMTANEIRDSFKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 71

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   L
Sbjct: 72  RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKENAIDYAWEYLVEVLKL 131

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W K   L  D II    +DNFW M ETGPCGPC
Sbjct: 132 DPKDLYVTVFEGSPEEGIARDDEAASYWAK--HLPEDHIINGNKHDNFWEMGETGPCGPC 189

Query: 173 SEIFFDQGEC-IPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D         +PG    +++  + IEIWN+VFMQF++++      L    IDTGM
Sbjct: 190 SEIHVDSRSAEEKAKVPGRELVNKDDPQVIEIWNIVFMQFQRKSDGTLEPLAMNVIDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH-------R 273
           G ER+  +LQ K +NYD D+F+  I+  E+++G KY        EG             R
Sbjct: 250 GFERLVRMLQGKNSNYDTDIFQPTIKEIERLSGKKYGFTTPSGKEGEGKTEQEKIDIAMR 309

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH+R+ +F IAD  LP N   GYV+RRI+RRA+ YA   L   E  +  LL     E
Sbjct: 310 VVADHMRAVAFSIADSQLPGNAKAGYVIRRILRRAVRYAYTFLEQKEAFIYKLLNTFIHE 369

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFK 389
           MG+AYPEL   + LI   ++ E++ F +TL++G+ LL   +  +   GK E L+G  AF+
Sbjct: 370 MGNAYPELPAQRELIARVIKEEEDSFLRTLEKGINLLTNAMDEMKAQGKTE-LDGKEAFR 428

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + ++C      +D   F   + +Q++RAR  ++ + +G     W  LK
Sbjct: 429 LFDTYGFPLDLTE-LICRENGFTVDEKQFEAEMAQQKARARNAAV-VENGD----WVVLK 482

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G  +F+GYD       +   RKV  +K                              
Sbjct: 483 E--GEQEFVGYDYTEYECHILRYRKVTQKKNTF--------------------------- 513

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   + I D  K+     +H  IV++     E 
Sbjct: 514 -FEIVLDHTPFYGEMGGQVGDQGVLVSEDETIDIIDT-KRENNQSIH--IVKQMPKNVEA 569

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++ D LRFD +H + +T 
Sbjct: 570 DFMACVDTDKRDASAANHTATHLLDYALKQVLGDHCEQKGSYVSADTLRFDFSHFQKVTD 629

Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VND+I Q+L     R    E+A   GA AL G KY D+VRV+S        
Sbjct: 630 EELRQVERMVNDMIRQDLKCDEHRNTPLEEAKKMGAVALFGEKYGDKVRVISFG------ 683

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H +STG I    IV+ESS+ AGIRRIEA+TG++    +   ++ ++ L + 
Sbjct: 684 PSCEFCGGIHATSTGRIGFFKIVNESSVAAGIRRIEALTGEQCEEAVYELEDTMRDLKAM 743

Query: 749 LKVSQG--NVVGR-------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
              ++   +VV +       +++  E +R+  +      L  + E ++  K+        
Sbjct: 744 FNNAKDLKSVVAKYIQEHDAMKKEMESFRQQAVSRMANGLVESAETVNGVKVVKA----- 798

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLAR 857
            +  V+    K ++  +++ I   ++ ++G + E K  + I++++D++     NA  + R
Sbjct: 799 -VLPVEPASAKDIVFKVREAIPEKLVCVLGSTHENKPLLSIMLSDDMVKDHELNAGKIIR 857

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +AK++  GGGGG+PH AQ+GG +      A+  V
Sbjct: 858 EAAKLI-KGGGGGQPHYAQAGGKDVEGVSAAVEKV 891


>gi|325298627|ref|YP_004258544.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318180|gb|ADY36071.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 872

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 341/920 (37%), Positives = 514/920 (55%), Gaps = 82/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+  I  AW+ L     +
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D   LY TV+        + D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPSILYATVFEGSPEEGLERDNEAAGYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++    IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+   LQ K +NYD D+F+ +I+    +TG+ Y  +  V+   RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKKSNYDTDVFQPIIKVIGDLTGLTYGKDPKVDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMFKLVPVLIENMGQAYPELKAQQP 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD V+  +   +   ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKVMNDAKAAQKTEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR ++  + +G     W  L+E  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNIEMQKQKQRAR-NAAAIETGD----WVILEE--GETHFVGYD-- 468

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
               + + + ++L                + I Q+ + +         ++V  +TPFYAE
Sbjct: 469 ----YTEYETRILR--------------YRQIKQKNQTL--------YQIVLSETPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D  KK   + +H  I ++     +  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEIIDT-KKENNLPIH--IAKQLPEHLDAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQLREVEHLVNAKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+   R +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHL-MGQD--EKLKSL---ASFLKVSQGNV 756
           G+I ++ I+SESS+ AG+RRIEAITG +    + + QD    LK+L   A  L+ +    
Sbjct: 674 GKIGMVKILSESSVAAGVRRIEAITGAKVEEMMDILQDTINDLKALFNNAPDLRAAISKY 733

Query: 757 VGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           V     +++  EE+ K +   AK +L  + +++  H +  +  M  +  E     +K++ 
Sbjct: 734 VDENAGLKKQMEEFMKEREASAKARLIESAKEI--HGVKVIKAMLPMRPEA----IKNIA 787

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
             L+ +    + +++G   + K  + +++++D +    NA  L R +AK++  GGGGG+P
Sbjct: 788 FQLKGQFPENLFVVIGSIFDDKPMLTVIMSDDQVKAGLNAGQLVREAAKLI-QGGGGGQP 846

Query: 873 HMAQSGGPNGNKADQAIAGV 892
           H A +GG N +    AI  V
Sbjct: 847 HFATAGGKNADGLSAAIDKV 866


>gi|306830937|ref|ZP_07464099.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426960|gb|EFM30070.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 888

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/916 (37%), Positives = 508/916 (55%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 23  AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 82

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT    FD  +
Sbjct: 83  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 138

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 139 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 194

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                    L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 195 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 254

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 255 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 313

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ ++
Sbjct: 314 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 373

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G  +LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++   +G
Sbjct: 374 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 432

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA+ +  GS G   +   S+ E+              S F
Sbjct: 433 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 477

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             ED +VL             S +  I+   +  E    GQ + +VF +TPFYAE GGQ+
Sbjct: 478 SYED-EVL------------DSTLSVIIADNKRTEAVSEGQAL-LVFAKTPFYAEMGGQV 523

Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  N
Sbjct: 524 ADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDV-LASLSVGTTYTLEIDSKRRHRVIKN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   
Sbjct: 583 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI 
Sbjct: 643 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 697

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E
Sbjct: 698 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 757

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           +  KLQ  +A+ K +            + + N + +I S+V   D+  L++  D  ++K 
Sbjct: 758 QLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 817

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L     EK   ++   ++D+    +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 818 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 872

Query: 881 NGNKADQAIAGVASFL 896
           +  K    +A VA  L
Sbjct: 873 DAAKIADLLAAVAENL 888


>gi|113478168|ref|YP_724229.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|122964340|sp|Q10VG8|SYA_TRIEI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110169216|gb|ABG53756.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 874

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 343/897 (38%), Positives = 511/897 (56%), Gaps = 55/897 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL F+ +  H +LPS+SL+P  DPT++ T +GM+PFK IF GQ+   Y   TT 
Sbjct: 9   NEIRKKFLSFYAQREHTILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQPRQYPRATTS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI LAW+L TK F L   R
Sbjct: 68  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKPEAIALAWELSTKIFALPPER 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EAF +W+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 124 LVVSVFREDDEAFAIWRDQIGIPAHRIQRMDEADNFWASGPTGPCGPCSEIYYDFHPEL- 182

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 183 GDDHIDLEDDTRFIEFYNLVFMQYNRDANGNLTPLENRNIDTGMGLERMAQILQKVPNNY 242

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ +  +  + Y  ++    V+ +VI DH+R+ + LIADG+  +N GRGY+L
Sbjct: 243 ETDLIFPIIKTASDIADIDYRKSDDKTKVSLKVIGDHVRAVANLIADGVTASNVGRGYIL 302

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G +      +     T     YP L + + +I+  L+ E+ RF +T
Sbjct: 303 RRLIRRVVRHGRLIGISGEFTSKVAETAITLAEDIYPNLRERETVIKAELQREESRFLET 362

Query: 362 LDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L+RG  LL  +++     K + ++G+ AFKLYDT+G PL++ Q+I    GL  +D+  F+
Sbjct: 363 LERGEKLLAEIMAKPETKKTQHISGEDAFKLYDTYGFPLELTQEIAEENGLT-VDVSMFD 421

Query: 420 Q--ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           Q   L + RS++   ++ L +         +K     TQF+GY                 
Sbjct: 422 QEMKLAQIRSQSAHETIDLTAQD------GVKLDIDKTQFLGY----------------- 458

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                DL++     V A+V  GE +E   +G +V++V D+TPFYAE+GGQ+ D G   GD
Sbjct: 459 ----TDLSSPAQ--VMALVGDGEQLETVQAGAQVQIVLDKTPFYAESGGQIADRGYLSGD 512

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + ++I DVQK+   IFVH   +ERG L+  M++   ID   RR+   NH+ATHLL  AL
Sbjct: 513 SLVVRIEDVQKQ-NNIFVHFGRIERGRLQLGMTVNAQIDGTCRRRAQANHTATHLLQAAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            +++ S +SQ GS ++ D LRFD    + +   E++ +E  VN  IA+        M  E
Sbjct: 572 RSLVDSSISQAGSLVSFDRLRFDFNCPRGLKPEEVEQVEAQVNSWIAEAHSATVAEMPLE 631

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A GA A+ G KY D VRVV       GV S  LCGGTHV++T EI +  I+SE+ I 
Sbjct: 632 VAKAKGAVAMFGEKYADVVRVVDYP----GV-SMELCGGTHVNNTAEIGVFKIISEAGIS 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           +G+RRIEA+ G     +L  +D  +K L+   K     +  RV  + +E +  + QL   
Sbjct: 687 SGVRRIEAVAGLAVLDYLKVRDAVVKELSDRFKAKPEELSERVSNLQQELKDSQKQLEAL 746

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L +   D        V     +++E   VD++ LK+  + LQ+K+    ++L G + 
Sbjct: 747 KGELAVAKSDQLLGNAETVGEFQILVAEMPGVDAEALKTAAERLQQKLDESAVVL-GSAA 805

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           E K S++   ++ +  +             + GGGGGGRP++AQ+GG + +K  +A+
Sbjct: 806 EGKVSLVAAFSKSVNGKGLQAGKFIGGIAKICGGGGGGRPNLAQAGGRDPSKLKEAL 862


>gi|331266120|ref|YP_004325750.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326682792|emb|CBZ00409.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 872

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 344/925 (37%), Positives = 500/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y ED++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPADKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + + N   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVNEANGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+D+    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K    +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQDLLDAVAGKL 872


>gi|326803428|ref|YP_004321246.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651546|gb|AEA01729.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 883

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/919 (36%), Positives = 504/919 (54%), Gaps = 71/919 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +++F++  GH++ PS+SL+P NDPTL++ NSG+   K+   G E P    +   QK
Sbjct: 9   IRQMWIDFWKGKGHDIYPSASLVPDNDPTLLWMNSGVAALKHYLDGSEVPENPRIANAQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRR 124
           C+R     ND++NVG T RH TFFEMLGN+S G YFKE  I  AW+ LT E    LD   
Sbjct: 69  CIRT----NDIENVGVTARHQTFFEMLGNWSVGDYFKEEVIPWAWEFLTDEKWLGLDPEL 124

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           LY+T Y +D+ +  LW+K++GLS D  + +   DNFW +   GPCGP +EIFFD+G+   
Sbjct: 125 LYMTYYPDDDVSHGLWQKVTGLSEDHFVSL--EDNFWDLG-AGPCGPDTEIFFDRGKAYQ 181

Query: 184 ------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P   PG   E ERY+EIWN+VF +F          L + ++DTGMGLER+++VL
Sbjct: 182 DLDDDDPEMFPGG--ENERYLEIWNIVFSEFNHMPDGSYEKLKQHNVDTGMGLERISSVL 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294
           QE   N++ DL   LI+  E+++ G KY  +   +   +VI DH+R+ SF + D  LP+N
Sbjct: 240 QETPTNFETDLLFPLIKEVEKLSDGKKYGESKETDTAMKVIADHIRAVSFAVGDNALPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RR++ Y R LG     +  L+P +  +M   YPEL + + +I+E +  E
Sbjct: 300 EGRGYILRRLIRRSVMYGRRLGIQGSFLAKLVPIVADKMEKHYPELKEKEAIIQEVVDRE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF +T+  G  ++   ++ L +  +  L+G  AFKLYDT+G PL++ ++ L   G + 
Sbjct: 360 EKRFQETIADGENIIKNKIAELEESGENSLDGQSAFKLYDTYGFPLELTEEYLAETGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +DI  FNQA+EEQ+ RARA     G    +     L E    + F GY+           
Sbjct: 419 VDIDGFNQAMEEQKERARAARKDQGGLAVQST--VLGEIDVPSHFTGYEE---------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                     D+T    + + AIV Q EI +EA +  K   + ++TPFY E GGQ+GD+G
Sbjct: 467 ----------DVT---ETKINAIVYQDEISQEAPANSKAYFIAEKTPFYGERGGQVGDSG 513

Query: 533 CAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                DG  L      K A      H I     +     + L +D   RR +  NH+ATH
Sbjct: 514 KLYNLDGELLGYIRDTKHAPNDQNLHYIDTVQPISVGQEVRLEVDSARRRLIRNNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  +LG  V+Q GS +    LRFD T+   ++S +L+ +E  VN+ I + +PV T
Sbjct: 574 LLHRVLKDVLGEQVNQAGSLLDEHYLRFDFTYFGQVSSDQLEEVERRVNEKIWEQIPVET 633

Query: 652 RIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                + A   GA AL G KY   +D +RV++++       S  LCGGTHV +TG I L 
Sbjct: 634 IFTTVKAAKEHGAIALFGEKYLKLHDEIRVINID-----DWSMELCGGTHVKNTGFIGLF 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEY 767
            I+SES I +G+RRIEA+T + A  +   +   L  +   LKV +  +V  R++++  E 
Sbjct: 689 KIISESGIGSGVRRIEALTSKAAYEYYEAKLGLLNQVRDDLKVKKAEDVPHRLQQLEGER 748

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADV----NFMSHIISEVDSK---ELKSVMDALQKKI 820
           + L+       L      ++  +I D     N + +I  E+D K   +L+++ D  ++  
Sbjct: 749 KSLE--SEVESLHAKANQMAASQIFDAVKESNGVRYIAEELDHKTMDDLRAISDEWKQNN 806

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   + + KA++L+ V+ D +     A D+ +  A  +  GGGGGRP +AQ+GG
Sbjct: 807 YSDVLVLATANGD-KANMLVAVSPDKVKEGLKAGDIIKELAPYI-NGGGGGRPELAQAGG 864

Query: 880 PNGNKADQAIAGVASFLKK 898
            N      A+  +   L K
Sbjct: 865 KNPAGIPDALKALEEVLNK 883


>gi|86741900|ref|YP_482300.1| alanyl-tRNA synthetase [Frankia sp. CcI3]
 gi|123750882|sp|Q2J821|SYA_FRASC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86568762|gb|ABD12571.1| alanyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 881

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 335/897 (37%), Positives = 492/897 (54%), Gaps = 56/897 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +    
Sbjct: 2   DTAEIRSRFLNHFARRGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLPAPWPRAA 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQKCVR      D++NVG T RH +FF+M GNFSFG YFK  AI  A++LLT+ F    
Sbjct: 61  SVQKCVRT----VDIENVGHTARHASFFQMCGNFSFGDYFKAEAIPFAFELLTEGFGFKA 116

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+ TVY +D+EA  +W+K+  L A++I R    DNFWSM   GPCGPCSEI+FD+G C
Sbjct: 117 DDLWATVYLDDDEAEGIWRKL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRG-C 173

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ------ERFILPKMSIDTGMGLERMATV 236
             G   G   + ERY+E+WNLVFMQ+E+          ER  LP  +IDTGMGLERMAT+
Sbjct: 174 AYGREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPIER-ELPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  +  + V  RVI DH R+++ LI+DG++P+N
Sbjct: 233 LQGVDNLYEIDISRPVLDAAGRLTGRRYGADPADDVRLRVIADHTRTAAMLISDGVVPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L   + + MG+ YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAIRNARLLGAHEPVMSELFAVVGSAMGTIYPELLDNAETITGVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++ F +TL  G  + D        LG    L G+ AFKL+DT+G P+D+  ++    GL+
Sbjct: 353 EQAFAETLRTGTTIFDTAARQARSLGS-TTLGGEAAFKLHDTYGFPIDLTLEMAAEAGLS 411

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMK 470
            +D   F + ++ QR  A+A       G  +   F  +  + G T F GY+ L       
Sbjct: 412 -VDEAGFRRLMDRQRQAAKADRAARRIGNVDLSAFRPILARSGPTTFTGYEEL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         T+GV  +V         +  A    +V VV D TPFYAE+GGQ  D
Sbjct: 464 ------------SRTSGVVGLVGIADGA--GLAAAGEDTEVGVVLDATPFYAESGGQEPD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    DG  +++ DVQ+    + +H   V  G LR  + +   +D   RR +S +H+AT
Sbjct: 510 LGRLRFDGGEVEVLDVQRPVPDLVLHRVRVLGGELRLGVEVFAEVDADRRRAVSRSHTAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV 
Sbjct: 570 HLVHTAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLADVEDEINEVALRDLPVR 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +  +E+A   GA AL G KY D VRVV V     G ++  LCGGTHV+S+ ++  + +
Sbjct: 630 AFVTTQEEARRLGAMALFGEKYGDAVRVVDV-----GDYARELCGGTHVASSAQLGAVKL 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           +SE+SI AG RR+E + G  A  +L  +   +  L++ LK     +V RV +I    R  
Sbjct: 685 LSEASISAGTRRVEGLVGLDAFRYLAREHLLVSQLSTALKARPDELVDRVTDIVGRLRDA 744

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ---SGII 825
           + +L   +    L           +V  ++ + +EV +      +  L   ++   +G  
Sbjct: 745 ERELERLRAAAVLAGAGALAEGAEEVAGVAVVTAEVPAGTAPDDVRLLALDVRGRLAGRP 804

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +V ++K   +S+++V  +    R   A DL R S   L GG GGG+P +AQ GG N
Sbjct: 805 AVVAVAKADGSSIVVVTDDAARGRGLRAGDLVRQSWASL-GGKGGGKPDVAQGGGGN 860


>gi|281423902|ref|ZP_06254815.1| alanine--tRNA ligase [Prevotella oris F0302]
 gi|281401990|gb|EFB32821.1| alanine--tRNA ligase [Prevotella oris F0302]
          Length = 887

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 334/925 (36%), Positives = 502/925 (54%), Gaps = 99/925 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P  + 
Sbjct: 1   MMTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KD 59

Query: 61  VTTV--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           V  V  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L    
Sbjct: 60  VRRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVL 119

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L+   LY+TV+        + D+EA   W K   + AD II    +DNFW M +TGPCG
Sbjct: 120 HLNPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCG 177

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PC+EI  D +       +PG    +++  + IEIWN+VFMQ+ ++       LP   IDT
Sbjct: 178 PCTEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDT 237

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVN 271
           GMG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      + 
Sbjct: 238 GMGFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIA 297

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  LLP L 
Sbjct: 298 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLV 357

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387
            EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L   G+ E L+G  A
Sbjct: 358 REMGQAYPELPAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTE-LDGTSA 416

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F+L+DT+G PLD+ + ++C      +D   FN+ + +Q++RAR  ++ + +G     W  
Sbjct: 417 FRLFDTYGFPLDLTE-LICREHGYTVDEKGFNEEMAKQKARARNAAV-VENGD----WEV 470

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           ++E  G   F+GYD    +  +   RKV  +K                            
Sbjct: 471 IRE--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF------------------------- 503

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               E+V D TPFY E GGQ+GD G  + +   ++I D  K+     +H  IV++     
Sbjct: 504 ---YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDT-KRENNQSIH--IVKQLPKDL 557

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +   +  +D + R   + NH+ATHLL +AL  +LG HV Q GS + P  LRFD +H + +
Sbjct: 558 QAEFMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKV 617

Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           T  EL+ +E  VN +I ++ P+   R    E+A   GA AL G KY D+VRVV       
Sbjct: 618 TDEELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFG---- 673

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S   CGG H  STG I    I+SESS+ AGIRRIEA+TGQ     +    + +  L 
Sbjct: 674 --PSCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLK 731

Query: 747 SF------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           S       LK +    +G  +E+ +E  K Q    +R      E+L   +  +VN +  I
Sbjct: 732 SMFNNSKDLKATLKKFIGEHDEMRKEIEKFQAQAVER----TKEEL-LKRAQNVNGVQVI 786

Query: 801 --ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLA 856
             +  ++    K +   L++ I   +++++G +   K  + ++ ++D++     NA  + 
Sbjct: 787 KAVLPLEPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTII 846

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
           R +AK++  GGGGG+PH AQ+GG N
Sbjct: 847 REAAKLI-QGGGGGQPHYAQAGGKN 870


>gi|328872010|gb|EGG20380.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 1018

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 326/815 (40%), Positives = 453/815 (55%), Gaps = 98/815 (12%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR+TFL +F +NGH+ +  SSLIP ND TL+FTN+GMV FK  F   E P    VTT Q
Sbjct: 35  NIRSTFLNYFNENGHKKVDGSSLIPHNDSTLLFTNAGMVQFKQCFAALETPPAPMVTTAQ 94

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQR 123
           KCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY   K  AI+ AW LLT    L   
Sbjct: 95  KCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYKHAKRDAIRHAWQLLTGPMGLPAN 154

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGEC 182
           R+  +V + DEEA  +W+   GL+ D+I+R    DNFWSM +  GPCGPCSE+F+D+GE 
Sbjct: 155 RIVASVLEGDEEAADIWRTEIGLTDDRILRCGPKDNFWSMGDGAGPCGPCSELFWDRGE- 213

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                 G+  +GERY+EIWNLVFMQ+ + +      LP   +DTGMGLERMA VLQ+K +
Sbjct: 214 ------GNEMDGERYLEIWNLVFMQYWRDDAGNLTPLPTPCVDTGMGLERMAAVLQDKQS 267

Query: 243 NYDIDLFKHLIQASEQVT--------GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           NY+IDLF +LI   + V         G  +      + RVI DHLRS SFLIADG++P+ 
Sbjct: 268 NYEIDLFANLIDGIKSVAEKNDSVFVGKVHADKFETSMRVIADHLRSVSFLIADGVVPSA 327

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLR+I+RRA+ Y +++G+ +P +  L P L + MG  Y +L Q    I+  + +E
Sbjct: 328 TGRGYVLRKIIRRALSYGQMIGFQQPFLHLLQPLLTSLMGDFYTQLSQRAPQIQNVIYNE 387

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +  F + + RG+  LD ++     DE       F +Y T+GLPL+I  ++   +    ID
Sbjct: 388 EILFYQAIQRGVTYLDDLIDSNKLDEW----NVFNIYSTYGLPLEI-SEVKARQSNINID 442

Query: 415 IISFNQALEE-QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL------RGSK 467
           +    Q ++E +     +      +  T +I    K +   + F+GY+ L      +   
Sbjct: 443 MDKVQQFIDETKEKSKSSWKKDQSNNNTNQILQKWKNENIKSNFVGYEKLHCTTRIKAQH 502

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F +ED  +                                     VV +  PFYA +GGQ
Sbjct: 503 FSEEDNLLY------------------------------------VVLEDCPFYAVSGGQ 526

Query: 528 LGDTG---CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLT--------- 574
           +GD G    ++G+G  +  + D  K  +G+ V   ++E    +  ++ V+          
Sbjct: 527 IGDKGIIVTSVGNGENIYNVIDTLKPYDGVQV--VVIEFDSTKQRLNQVMDDLKVDNKVD 584

Query: 575 --IDYQNRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAE 631
             +D Q R+Q +I+H+ATHLLH AL   LG + V Q GS + P+ LRFD T    +++ +
Sbjct: 585 CRVDKQTRQQTAIHHTATHLLHSALRKELGENSVVQAGSYVGPESLRFDFTAVGKLSNKQ 644

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           + +IE  VN  I Q++P+  + M++ DA+ + A  L   KY D VRVVSV     GV S 
Sbjct: 645 ITNIEQTVNQAIQQDIPLDVQEMSQGDAVKTDAIQLFSEKYGDSVRVVSVP----GV-SK 699

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTHV  TG+I L  IVSE+SI AG RRIEA  GQ A + L      +  LA+ L V
Sbjct: 700 EFCGGTHVGKTGDIQLFRIVSETSIAAGTRRIEARAGQAAATWLDSFKSTVDGLATKLGV 759

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              N+VG+  E         LI  K++L+  V +L
Sbjct: 760 PT-NIVGKHVE--------SLIDNKKQLEKQVSEL 785


>gi|116627351|ref|YP_819970.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122268047|sp|Q03LZ8|SYA_STRTD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116100628|gb|ABJ65774.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 872

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 337/912 (36%), Positives = 508/912 (55%), Gaps = 72/912 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FDL +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGEE 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+A
Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293
            V+Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I DG LP 
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ ++ 
Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  +LD +L++L   GKD +   D+ FKLYDT+G P+++ +++    G 
Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F  A++EQ+ RARA  +  GS              G       ++   S+F+ 
Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E                  S +  IV      +   SGQ + +VF+QTPFYAE GGQ+ D
Sbjct: 464 E-------------AETAESRLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVAD 509

Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G    A G  +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 510 HGTISDAAGTTV-ARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
              LQ  +A  K K            + + N + +I S+V   D+  L++  D  ++   
Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L    +EK   ++   +E++    +A +L ++ A ++  G GGG+P+MA +GG +
Sbjct: 803 SDVLVLAAHIREKVNVLVASKSENV----HAGNLIKVLAPIV-SGRGGGKPNMAMAGGSD 857

Query: 882 GNKADQAIAGVA 893
            N     ++ VA
Sbjct: 858 ANSIQDLLSAVA 869


>gi|317009923|gb|ADU80503.1| alanyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 847

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 318/837 (37%), Positives = 466/837 (55%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++    +T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISGLTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +    +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSHTHAYLKESKEMVVKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL K++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNKNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y   +F+GY+    +     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECTTKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
              P                           Q+V V+ ++TPFYAE GG +GD G    D
Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALFKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAAIVSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        + ++LK+  + LK    +V+  + ++ E  +  Q +    
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKTLLK--NNDVIAGINKLKESVKNSQKVPVSM 737

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
                  DL   KI  V+ +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 738 -------DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|145348968|ref|XP_001418913.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|313471499|sp|A4S051|SYAP_OSTLU RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|144579143|gb|ABO97206.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 906

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 329/843 (39%), Positives = 464/843 (55%), Gaps = 54/843 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR  FL+F++  GH +LPSSSL+P  DPT++ T +GM+ FK +F GQ +  ++  TT 
Sbjct: 25  AAIRQRFLKFYETRGHAVLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQRERAHERATTT 83

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ A Q AW+L T EF L+  R
Sbjct: 84  QKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKDACQWAWELATGEFGLNPER 139

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           ++++V+ ED+EAF +W+ + G+   +I R+   DNFW+   TGPCGPCSE+++D     P
Sbjct: 140 VWVSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYD---FYP 196

Query: 185 G-GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             GL G+  ++  R+IE +NLVFM+  +        L   +IDTGMGLERMA +LQ   N
Sbjct: 197 ERGLEGADLDDDSRFIEFYNLVFMELNRDADGGVTPLKNKNIDTGMGLERMAQILQGVPN 256

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I  +  + G+ Y   N V     +VI DH R+ S++I+DG+  +N GRGY
Sbjct: 257 NYETDLIMPIINKAASMAGIDYNACNDVQKQQLKVIGDHTRAVSYMISDGVFASNIGRGY 316

Query: 300 VLRRIMRRAMCYARLLGY-TEPLMMHLLPALCTEMGSAY----PELIQAKLLIEETLRSE 354
           ++RR++RR +   RLLG   E       PA+     S      P++ +    I   L  E
Sbjct: 317 IVRRLLRRVVRNGRLLGIKPEEGASAFTPAIAEVAISMSEGCDPQVAKNSARILAELERE 376

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +  F KTL RG  +L  ++    K +  L+G  AF LYDT+G PLDI  D+    G+  +
Sbjct: 377 ELSFQKTLGRGEEMLAELIETAKKTKTGLSGKDAFTLYDTYGFPLDITADVATEAGIT-V 435

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+ EQRS ++A    +       +     E    + FIGY             
Sbjct: 436 DLEGFESAMAEQRSMSQAAHQTVDVTAGNALARVADELGAKSTFIGY------------- 482

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
               +    D++N     V AIV  GE VEEA  G KV++V D TPFYAE+GGQ+GD G 
Sbjct: 483 ----ESTSSDVSN-----VLAIVCGGESVEEAPEGAKVDIVLDVTPFYAESGGQVGDNGV 533

Query: 534 A-IGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
               DG  L+++DVQK   G I VH A V +G ++    +   +D  +RR+   NH+ATH
Sbjct: 534 LHTADGATLEVSDVQKAGGGRIIVHTATVTKGSIKKGSQVTANVDENSRRRAKSNHTATH 593

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG  VSQ GS    D LRFD    K  T A+L  +E+ VN  I+Q+  +  
Sbjct: 594 LLQSALKKVLGEDVSQAGSLCGFDRLRFDFNSPKAPTEAQLLEVENLVNGWISQSAALTA 653

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M    A   GA  + G KY D VRVV V     G+ S  LCGGTHVS+T EI    I+
Sbjct: 654 EEMPIAAAKDKGATMMFGEKYGDVVRVVDVP----GI-SMELCGGTHVSNTAEIGGFKIL 708

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I +GIRRIEA+ G      L  +D  +K LAS L+V    + GRV  + E+ R  Q
Sbjct: 709 SEAGIASGIRRIEAVAGAGVVELLQQRDAVVKQLASALRVPPEEITGRVSSLQEDLRATQ 768

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +    + +L V           ++ +   +   +  VD   LK   + L  ++  G  +
Sbjct: 769 KLAESLRGELAVAKAGALVSQAREVGEAKVLVARLDGVDPAALKVAAENLAAQLGDGAAI 828

Query: 827 LVG 829
           ++G
Sbjct: 829 VLG 831


>gi|309775356|ref|ZP_07670361.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916873|gb|EFP62608.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 875

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 341/914 (37%), Positives = 513/914 (56%), Gaps = 68/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP    +   
Sbjct: 7   SQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKNNRIANA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT        +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPEWIGFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +D +A+++W ++  +    I++  T+DNFW + E GP GP SEIF+D+GE 
Sbjct: 123 EKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIFYDRGEA 179

Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234
             P GL         E +RYIE+WN+VF QF+   + +++E   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPQGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKEYKELPQKNIDTGMGLERLV 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N+D DLF  +I A+EQ T ++Y +  N +  RVI DH+R+ +F +ADG L +
Sbjct: 240 CLVQGGETNFDTDLFLPIIHATEQYTSLRYADAENKMAFRVIADHIRTVTFALADGALFS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RR + +A+ L      M  L+P +   M   YP L +    I   +++
Sbjct: 300 NEGRGYVLRRVLRRGVRFAKKLNIQGAFMYKLVPVVYDIMKDYYPYLEEKLDYIARLVKA 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF  TL  G  LL  V+       +++G  AFKLYDT+G PL++  +I    G + +
Sbjct: 360 EEERFHATLADGEKLLLQVMEEKKDSHVIDGKTAFKLYDTYGFPLELTVEIAQESGYS-V 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F+  +++QR RARA      S  ++ I   L E    + FIGYD+           
Sbjct: 419 DKDGFDAEMQQQRERARAAREAAESMGSQSI--DLMEFTRESTFIGYDVRH--------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ V A+ + G  V+ A+S +  +V+FD T FYAE+GGQ+GD+G 
Sbjct: 468 --------------TSATVIALFKDGVRVD-AISDEG-DVIFDTTVFYAESGGQVGDSGT 511

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +G++  + +  K      + H ++  G LR + ++ L +D + R  ++ NHS THLL
Sbjct: 512 LRAEGVQAVVNNTTKAPHKQHLSHVVITEGELRVQDTVTLQVDERKRDIITSNHSCTHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  ++G+H+ Q GS ++ + LRFD TH + +   +LK IE  VN  I+ +  V    
Sbjct: 572 QSALKQVVGTHIQQAGSFVSEEYLRFDFTHYEKVNEEQLKKIEQLVNQYISAHYTVSKVE 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  E+A  SGA AL   KY D VRVV++     G  S   CGG HV++T EI +  I+SE
Sbjct: 632 MPIEEAKKSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGVCKIISE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEEIWEEYR 768
            SI +GIRRI A TG  A      +D  L S+A+ LK+      +  VV  ++E  +  +
Sbjct: 687 ESIGSGIRRITAKTGYDAYCEFAKEDATLHSIAADLKLKGISKVEEKVVQLLDEAAQLKK 746

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
           +L  + A     L   DL  HK+  +N    +I  V   D+K LK ++  ++ + ++ ++
Sbjct: 747 ELAALQASM-FALKANDL-VHKMQPLNNRQVLIERVDGADAKALKDIVSNIRSQKENCVV 804

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAV---DLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            L  +  ++   V  V   D L   + +   DL R  A V+ GG GGGRP MAQSGG + 
Sbjct: 805 FLAAVKDDR---VTFVAGADALAVQSGIKCGDLVR-EAAVICGGKGGGRPDMAQSGGKDA 860

Query: 883 NKADQAIAGVASFL 896
           +K ++A+  + + L
Sbjct: 861 SKVEEALHLIKNML 874


>gi|322375479|ref|ZP_08049992.1| alanine--tRNA ligase [Streptococcus sp. C300]
 gi|321279742|gb|EFX56782.1| alanine--tRNA ligase [Streptococcus sp. C300]
          Length = 872

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/930 (36%), Positives = 507/930 (54%), Gaps = 92/930 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPADKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       R     LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSDYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M + YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMENYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDS 806
             +VE + E+ R+LQ  +A+ K +           NV++ + H+     +++  +S  D+
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSDA 787

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             L++  D  ++K  S +++LV    +K   ++   T+D+    +A +L +  A ++  G
Sbjct: 788 GALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DG 842

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GGG+P MA +GG N  K  + +  VA  L
Sbjct: 843 RGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|119961931|ref|YP_948021.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|119948790|gb|ABM07701.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 918

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/929 (36%), Positives = 503/929 (54%), Gaps = 80/929 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+P Y   T+VQK
Sbjct: 32  ITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRATSVQK 90

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT   D     L 
Sbjct: 91  CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDGGYGLP 146

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI++D+G 
Sbjct: 147 AERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIYYDRGP 206

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLERM 233
              I GG P + E   RYIEIWNLVFMQ++ +N + +        LP+ +IDTG+G+ER+
Sbjct: 207 AYGIEGG-PLADE--TRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGMERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284
           A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS+  
Sbjct: 264 AMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRSALM 323

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +    
Sbjct: 324 LIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVETDF 383

Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
             I     +E++ F +T+  G   L D V         L+G  AF L+DT+G P+D+  +
Sbjct: 384 ARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDLTLE 443

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D   F   + EQR RA+A + G   G  +   +      G T F GYD L
Sbjct: 444 MAEEAGLQ-VDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGYDEL 502

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        + V+ IV  G  V  A +G ++E+V ++TPFYAE
Sbjct: 503 EG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPFYAE 539

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G + ++  +   +D + R   
Sbjct: 540 AGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERRHAA 599

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N  I
Sbjct: 600 EQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSNIAI 659

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V T++M   +A A GA AL G  Y   VRVV ++    G  S  LCGGTHVS+T 
Sbjct: 660 RNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHVSNTS 715

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760
            I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+   
Sbjct: 716 LIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRISST 775

Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSV 812
                  E+  +  RK QL  A   L    +D      A V  ++H   +V  + +L+++
Sbjct: 776 LNKLKATEKELDRLRKEQLAAAAANLVGTAKD-----AAGVRVVAHDAGQVGGADDLRNL 830

Query: 813 MDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              L+ ++  ++  + + G+S ++   +LI   E   +    A  L RL+A +L GGGGG
Sbjct: 831 ALDLRNRLGSEASTVAVAGVSNDRPV-ILIATNEAAREAGVKAGALVRLAAGIL-GGGGG 888

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+  +AQ GG +  K  +A+  V   + K
Sbjct: 889 GKDDVAQGGGTDAGKVSEALTAVVDAIAK 917


>gi|149196141|ref|ZP_01873197.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149140988|gb|EDM29385.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 899

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 347/931 (37%), Positives = 501/931 (53%), Gaps = 104/931 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR ++ +FF+   H L+ S+SL+P + P L+FTN+GM  F  IF G++K  Y  
Sbjct: 1   MLSSKEIRQSYFDFFKSKQHTLVSSASLMP-DSPNLLFTNAGMNQFVPIFLGEKKCPYTP 59

Query: 61  --VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDL++VG    HHTFFEMLGN+SF  YFK+ AI+ AW+ LTK  
Sbjct: 60  GRATDTQKCIRAGGKHNDLEDVGMDTYHHTFFEMLGNWSFNDYFKKEAIEYAWEYLTKVC 119

Query: 119 DLDQRRLYITVY----------DEDEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164
            + + RLY TVY          D D+EA+ +W  I    GL     I+     DNFW M 
Sbjct: 120 KIPKERLYATVYQPDKSSGDPADFDQEAYDIWADIFKADGLDPKVHIVNGDKKDNFWMMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGG-LPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPC+E+  D     P G   GS  + + ++ IEIWNLVF+Q           LP 
Sbjct: 180 ETGPCGPCTELHID---LTPAGDTKGSLVNMDTDKCIEIWNLVFIQMNANPDGTFSDLPT 236

Query: 222 MSIDTGMGLERMATVLQEKTN---------NYDIDLFKHLIQASEQVTGMKY-----EGN 267
            ++DTGMG ER+A+++    N         NY+ D+F  +      ++G KY     E N
Sbjct: 237 KNVDTGMGFERLASIILNTKNFTDFNGIISNYETDIFTPIFDKLTDISGKKYTSTLPEKN 296

Query: 268 NI-------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
            +             +  RVI DH+R+ SF IADGI P N  R YVLRRI+RRA+ Y R 
Sbjct: 297 ELGYFVAANDQEMVDIAFRVIADHIRTLSFSIADGIQPGNGDRNYVLRRILRRAVRYGRT 356

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           +G  +P    L+  L  +MG  +PEL + +  ++  ++SE+E F +TLDRG+ L +  +S
Sbjct: 357 IGLEKPFFYELVDTLADQMGEIFPELAKGRQHVKTVIKSEEEAFNRTLDRGINLFESEIS 416

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            L K + ++   AF+L D  G PLD+ + +   +G   +D+  F + + EQR RARA   
Sbjct: 417 KLKKGDSISAAFAFRLADEQGFPLDLTELMAREQGYK-VDVDGFEKLMNEQRDRARA--- 472

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVK 493
              +   E I  S  +    T+FIGY+         ED     Q K  I + NG++    
Sbjct: 473 ---AQKKEIISLSEIKTTEPTEFIGYE---------EDNSNEAQVKEVIKMKNGLA---- 516

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
                              V+FD +  Y E GGQ+GD+G     G   QI D QK  +  
Sbjct: 517 -------------------VIFDSSVCYPEMGGQVGDSGTIAAGGKLYQIKDTQKNGDAT 557

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +H+ + +      E  ++++ D + R ++  NH+ATHLLH AL  +LG HV Q GS + 
Sbjct: 558 -LHYLVGDEAPEEGE-KVIVSYDIERRDKIRKNHTATHLLHKALQDLLGEHVEQKGSLVA 615

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D LRFD +H + + + E++ +E  +N+ +  N  V T + N ++A A GA AL G KY+
Sbjct: 616 ADYLRFDFSHHQGLKADEIEKLELLINEKVILNSAVETHLKNIDEAKAMGAMALFGEKYD 675

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           D VRVV ++       S  LCGGTHV  TG+I L  I SE S+ AGIRRIEAITG  A  
Sbjct: 676 DDVRVVKID-----DFSLELCGGTHVKRTGDIGLFKITSEGSVSAGIRRIEAITGMDAVK 730

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKI 791
           + +  ++ L+ LA  LK     +  RV+++    + LQ  L  AK KL     D    K 
Sbjct: 731 YALNSNKVLQGLAGDLKCKVDTIPERVDKLSSNAKSLQKELDEAKSKLVALEADSLLEKA 790

Query: 792 ADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            ++N +  ++ +V  D+  LK +  +L+KKI SGI++    S   K  +   V++DL  +
Sbjct: 791 EEINGIKVLMLKVDNDAATLKDMTHSLRKKIGSGIVVFAS-SANGKVVLTSGVSDDLTKQ 849

Query: 850 -FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            F A ++  ++AK +GGGGGG  P  AQ+GG
Sbjct: 850 GFKAGEIVSIAAKQVGGGGGGA-PTFAQAGG 879


>gi|205830052|sp|A1R709|SYA_ARTAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/929 (36%), Positives = 503/929 (54%), Gaps = 80/929 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+P Y   T+VQK
Sbjct: 6   ITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT   D     L 
Sbjct: 65  CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDGGYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI++D+G 
Sbjct: 121 AERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIYYDRGP 180

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLERM 233
              I GG P + E   RYIEIWNLVFMQ++ +N + +        LP+ +IDTG+G+ER+
Sbjct: 181 AYGIEGG-PLADE--TRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGMERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284
           A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS+  
Sbjct: 238 AMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRSALM 297

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +    
Sbjct: 298 LIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVETDF 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
             I     +E++ F +T+  G   L D V         L+G  AF L+DT+G P+D+  +
Sbjct: 358 ARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDLTLE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D   F   + EQR RA+A + G   G  +   +      G T F GYD L
Sbjct: 418 MAEEAGLQ-VDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGYDEL 476

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        + V+ IV  G  V  A +G ++E+V ++TPFYAE
Sbjct: 477 EG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPFYAE 513

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G + ++  +   +D + R   
Sbjct: 514 AGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERRHAA 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N  I
Sbjct: 574 EQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSNIAI 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V T++M   +A A GA AL G  Y   VRVV ++    G  S  LCGGTHVS+T 
Sbjct: 634 RNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHVSNTS 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760
            I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+   
Sbjct: 690 LIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRISST 749

Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSV 812
                  E+  +  RK QL  A   L    +D      A V  ++H   +V  + +L+++
Sbjct: 750 LNKLKATEKELDRLRKEQLAAAAANLVGTAKD-----AAGVRVVAHDAGQVGGADDLRNL 804

Query: 813 MDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              L+ ++  ++  + + G+S ++   +LI   E   +    A  L RL+A +L GGGGG
Sbjct: 805 ALDLRNRLGSEASTVAVAGVSNDRPV-ILIATNEAAREAGVKAGALVRLAAGIL-GGGGG 862

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+  +AQ GG +  K  +A+  V   + K
Sbjct: 863 GKDDVAQGGGTDAGKVSEALTAVVDAIAK 891


>gi|257439376|ref|ZP_05615131.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257198251|gb|EEU96535.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 886

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 347/920 (37%), Positives = 519/920 (56%), Gaps = 63/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LT +    
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + +L+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+
Sbjct: 120 IPKDKLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E + G  Y  N  + ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QGVGNLFEVDTVQSVLHHVEHIAGKTYGENAKDDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG + P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K    +L G   FKL DT G PLD+ ++I   +G+  I
Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHQHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F+  +++Q+ RARA  L    SG +E ++  L  +   T F GY+ L  +      
Sbjct: 418 DEDGFHAEMKKQKERARAERLKKNISGWSEDLFGGLTVE--PTVFTGYETLNDTGV---- 471

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             V+       LT+ +++            EEA  G  V VV D+TPFYAE GGQ+ D G
Sbjct: 472 --VVALSDEETLTDAIATD-----------EEAKDG--VLVVLDKTPFYAEMGGQVADNG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G    L++ DV+K  +G +VH  ++E GI++    L   +D + R  +  NH+ATHL
Sbjct: 517 LLTGPECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLNAQVDKEYRMSVCRNHTATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS    +   FD TH   +T  EL  ++  VND I +++ V  +
Sbjct: 577 LQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTVK 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A   GA AL G KY   VRVV++E       S+  CGGTHV +T +I    IVS
Sbjct: 637 EMPIEEAKKLGAMALFGEKYGKVVRVVNIEG-----WSTEFCGGTHVKNTAQIGGFKIVS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE----Y 767
           ESS+ AGIRRIEA+TG+        Q+  L ++A+ LK +   ++  R E +  E     
Sbjct: 692 ESSVAAGIRRIEAVTGRNLLVRANLQEAMLHTVANTLKANNITSLPIRAEAVMAENKAMS 751

Query: 768 RKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           ++L+ I AK        L  N E++S  KIA   F            L+ + D+++ K  
Sbjct: 752 KELEEIKAKVAASKVNSLFDNAEEVSGVKIASAYFTG-----TTGDTLRGMCDSIRDKAV 806

Query: 822 SGII-MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878
           + ++ +LVG +++K   V + VT + L +   +    L  ++  + GG GGG+P  A +G
Sbjct: 807 NPVVAVLVGKAEDK---VTMAVTVNKLAQEKGLKAGVLVKEISAIAGGKGGGKPDFAMAG 863

Query: 879 GPNGNKADQAIAGVASFLKK 898
             +  K D+A+A V   ++K
Sbjct: 864 LKDETKIDEALAAVKGIVEK 883


>gi|148240734|ref|YP_001226121.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|205830237|sp|A5GPF9|SYA_SYNPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147849273|emb|CAK24824.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 891

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 344/903 (38%), Positives = 511/903 (56%), Gaps = 72/903 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH+ +PS+SL+P  DPT++ T +GM+PFK IF GQ++      T+ 
Sbjct: 18  AEIRDAFLAFFEERGHKRMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCATSS 76

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  F LD + 
Sbjct: 77  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVFGLDPKN 132

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ +D+EA ++W+++ G++  +IIR+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 133 LVVSVFRDDDEAEQIWREVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPEL- 191

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+ +R+IE +NLVFMQ  +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 192 GDDGIDLEDDDRFIEFYNLVFMQSNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPNNY 251

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LIQA+ +  G+ Y   +     + +VI DH R+ + LI+DG+  +N GRGY+L
Sbjct: 252 ETDLIFPLIQAAAERAGVDYHQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGYIL 311

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG  +P +  +  A    M SA+P+L + + +I   L+ E+ RF +T
Sbjct: 312 RRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLSERREVILAELQREEARFLET 371

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ Q+I    GLA +D+  F  A
Sbjct: 372 LERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLAGFETA 428

Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +E+QR RA+A ++ +        +++   L++    T+F GY+ L               
Sbjct: 429 MEQQRQRAKAAAVSIDLTLQDAIDQVAAGLQD----TEFRGYEQLE-------------- 470

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--- 535
                     SS ++A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G  +   
Sbjct: 471 ---------QSSSIQALVVNGEPAQSAVAGDAVQVVLDVTPFYGEGGGQIGDRGTLVADG 521

Query: 536 --GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             GDG+ + +  V +    +FVH   V+RG L     +   +D   RR+   NH+ATHLL
Sbjct: 522 QAGDGLIVMVESVSRN-RSVFVHSGRVQRGALAVGDVVHGRVDRACRRRAQANHTATHLL 580

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL   +   + Q GS ++ D LRFD    + +T+ EL+ IE  +N  IA    +  + 
Sbjct: 581 QAALKQEVDPGIGQAGSLVSFDRLRFDFHCPRAVTAEELERIESLINGWIADAHALEVQE 640

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  E A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IVSE
Sbjct: 641 MAIEKAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSE 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KL 770
           S + AGIRRIEA+ G     +L  +D  +K L    K   G ++ RV  + +E +   K 
Sbjct: 696 SGVAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVTALQDELKATGKA 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIML 827
                          L+   +A  D   +   +  VD   L+    +L  ++  G  ++L
Sbjct: 756 LAAAQAELAVAKSAALATKAVAVGDFQLLVERLDGVDGTGLQGAAQSLADQLGDGAAVVL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLA--RLSAKVLGG------GGGGGRPHMAQSGG 879
            G+        +I+V       F    +A  + + K +GG      GGGGGRP++AQ+GG
Sbjct: 816 GGLPDPADQGKVILVAA-----FGKAVIAQGQQAGKFIGGIAKLCGGGGGGRPNLAQAGG 870

Query: 880 PNG 882
            +G
Sbjct: 871 RDG 873


>gi|209523613|ref|ZP_03272167.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496018|gb|EDZ96319.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 876

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 349/905 (38%), Positives = 507/905 (56%), Gaps = 57/905 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ        TT 
Sbjct: 11  SEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L   R
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPPER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V++ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D      
Sbjct: 126 LIVSVFEEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYD-FHPEK 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ   NNY
Sbjct: 185 GDDNIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ +  + G+ Y   +    V+ +VI DHLR+   LIADG+  +N GRGY+L
Sbjct: 245 ETDLIFPIIKTAADLAGIDYAKSDDKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGYIL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G T      +           YP   + + +I+  L+ E+ RF +T
Sbjct: 305 RRLIRRVVRHGRLIGITGEFTTKVAETAIGLSEDVYPNTRERERVIKGELQREESRFLET 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  +L+   + + ++G  AF LYDT+G PL++ Q+I    GL  +D+  F   
Sbjct: 365 LERGEKLLAELLAK--QPDQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVDGFEAE 421

Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +  QR R++A   ++ L   T +     L E+   T F+GYD                  
Sbjct: 422 MSAQRKRSQAAHETIDL---TVQGSLDKLAEQIHPTTFLGYDF----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
           P  + T      V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G      +
Sbjct: 462 PDSEAT------VEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV+K ++ IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL  
Sbjct: 516 IVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E+A
Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRVV       GV S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYP----GV-SMELCGGTHVTNTAEIGLFKIVSETGIAAG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ GQ    +L  +D  +K L   LK     +  R   +  E +  + QL   K 
Sbjct: 690 IRRIEAVAGQSVLDYLNVRDAVVKELGDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +   D    +  ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S  K
Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVSDGK 809

Query: 835 ---KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               A+   VV +D   +  A       AK L GGGGGGRP++AQ+GG + +K  +A++ 
Sbjct: 810 VSLVAAFSPVVVKD--KKLQAGKFIGAIAK-LCGGGGGGRPNLAQAGGRDPSKLPEALST 866

Query: 892 VASFL 896
             S L
Sbjct: 867 AKSQL 871


>gi|238855615|ref|ZP_04645916.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260665325|ref|ZP_05866173.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282933011|ref|ZP_06338405.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313473100|ref|ZP_07813584.1| alanine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238831759|gb|EEQ24095.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239528663|gb|EEQ67664.1| alanine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260560829|gb|EEX26805.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302865|gb|EFA95073.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 878

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 341/927 (36%), Positives = 524/927 (56%), Gaps = 88/927 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  + +T+ 
Sbjct: 7   SEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   LD+
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY TVY +D ++ ++W+K +G+  D II++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 123 DKLYCTVYPKDVDSQRVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      E    P  +IDTGMGLER+ +
Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I  +E+++ G KY  N  + V  ++I DH+R+ SF I DG LP
Sbjct: 237 ILQDAPTNFETDLFMPMIHETEKMSAGKKYATNKEDDVAFKIIADHVRAVSFAIGDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I++ ++
Sbjct: 297 SNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKVMESHYPEVLKQAPFIQKVIK 356

Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RFG TL+ GL LLD ++  +    D+ ++G  AFKL+DT+G P ++  +    +GL
Sbjct: 357 NEEDRFGATLESGLTLLDDLIEKASANDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F++ +E Q+ RAR                   +  G  Q +G          +
Sbjct: 417 K-VDKAGFDKEMEAQKERAR-------------------KARGDLQSMG----------R 446

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
           +D  ++  K   +   GV     A    IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 447 QDETLMNIKDKSEFEYGVYEEKHAKLIDIVVNDKLVDKA-DGESATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL--------VLTIDYQ 578
           Q+ D G      I  Q  D+  K   I V HA  ++ +   ++ L        VL ID  
Sbjct: 506 QVADHG-----DIYDQDGDLVAKV--IDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAH 558

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  L  +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  
Sbjct: 559 RREGLRHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERL 618

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I +N+ V T I + E     GA AL   KY D+VRVV V        S   CGGTH
Sbjct: 619 VNQKIWENIEVKTTITDPETGKKMGALALFNGKYGDKVRVVQV-----NDFSIEFCGGTH 673

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVV 757
            ++T +I +  I+SE +I AGIRRIEA+T ++A  +L  +D  L+ +   +K ++  ++ 
Sbjct: 674 CANTAQIGIFKIISEQAIGAGIRRIEAVTSEKAYEYLANRDALLEEIKKEVKATKAEDIK 733

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHI--ISEVDS-KELKSV 812
            ++  + EE    Q   ++ + ++N    S     + +VN +  I  I+ V+   +L+ +
Sbjct: 734 TKITSLEEELHASQKKASELESEINAAKASDIFENVQEVNGLKVIAAIANVNGMNDLREL 793

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
            D  +   +S +++L   + + KA+++I +T+  LD+   A +L +++A +  GGGGGGR
Sbjct: 794 ADNWKSSNKSDVLVL-ACANDGKANMVISLTDAALDKGLKAGNLIKVAAPIF-GGGGGGR 851

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P+MAQ+GG N      AIA V + + K
Sbjct: 852 PNMAQAGGKNPAGLKDAIAAVINEINK 878


>gi|256832583|ref|YP_003161310.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686114|gb|ACV09007.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 895

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/918 (37%), Positives = 513/918 (55%), Gaps = 64/918 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF+   H ++PS+SLI   DP+++FT +GMVPF     G++K  +   T+V
Sbjct: 4   AEIRHRWLQFFESRDHHVVPSASLI-SPDPSVLFTIAGMVPFIPYMLGEQKAPWPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKC+R G    D+D VG+T RH TFF+M GNFSFG YFK  AI  AW+ +T         
Sbjct: 63  QKCIRTG----DIDEVGKTTRHGTFFQMNGNFSFGDYFKREAITFAWEFITGSEESGCLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   +++TVY +D+EA  LW+ ++GL  ++I R    DNFW   + GP GPCSEI+ D+
Sbjct: 119 FDPELIWVTVYHDDDEAASLWRDVAGLPEERIQRRGKKDNFWHTGQPGPGGPCSEIYVDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERF----ILPKMSIDTGMGLERM 233
           G    G   G   + +RY+EIWNLVFMQ+  +N   +E F     L + +IDTGMGLER+
Sbjct: 179 GPQY-GAEGGPVVDEDRYLEIWNLVFMQYSLENVTSKESFDIVGPLRQHNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A + Q   N Y+ID    +I+A+E+++G  Y  NN   V  RV+ DH+RSS  LI DG+ 
Sbjct: 238 ALLKQGVNNMYEIDEVYPVIEAAEKLSGRTYGENNDDDVRFRVVADHIRSSLMLIGDGVR 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RR++   RLLG TEP +  L+ A    M ++YP L +    I  T 
Sbjct: 298 PSNEGRGYVLRRLLRRSIRAMRLLGVTEPAIPALITASKEAMKASYPYLEENFATILATA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +E++ F +TL++GL +LD  +S      G    L G+ AF L+DT+G P+D+  ++   
Sbjct: 358 STEEDVFRRTLNQGLTILDAAVSDAKSQGGSSAALTGEQAFTLHDTYGFPIDLTLEVAAE 417

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRG 465
           +G++ +D  +F   ++EQR RARA +L    G  +  ++ SL     A  +F+GY     
Sbjct: 418 QGVS-VDETAFRSLMQEQRDRARADALAKKQGHGDLGVYQSLLASMAAPVEFLGY----- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                       Q P         + V A++  G+ V    +   VE+V D+TPFYAE G
Sbjct: 472 ---------TDAQAP---------AKVTALLVDGQPVATVTAPADVEIVLDRTPFYAEKG 513

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G    + G  + I DVQ    G+ VH   +  G L    ++V  ID   RRQ+S
Sbjct: 514 GQLADHGRVYSEQGATVDIADVQSPVSGLSVHRGALVDGTLSVSDAVVAEIDVVRRRQIS 573

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATH++H AL   LG+  +Q GS  +P+ +RFD   S+ + ++ L  IE  VND + 
Sbjct: 574 QAHTATHMIHKALQETLGADSTQAGSENSPNRIRFDFRQSQAVPTSALAEIEGRVNDQLR 633

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NL V   + + +DA A GA AL G KY DRVRVVS+    GG  S  LC GTHV ++GE
Sbjct: 634 ENLEVTDIVTSLDDARAMGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVPTSGE 689

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + ++ I+ E+SI +G+RR++A+ G  A  H   +   +  L+  L V    +  RVE + 
Sbjct: 690 LGIVTILGEASIGSGVRRVDALVGAGAYGHHARERALVSQLSGLLNVRSEELPTRVESLV 749

Query: 765 EEYRKLQL-IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKE-LKSVMDALQK 818
            + R  +  +   R+ QL         S   +  V  +++   EV + + L++++  ++ 
Sbjct: 750 GKLRDAEKELTTLRQAQLLARAGEIASSAATVGAVRVVTYDAGEVATPDALRTLVLDVRG 809

Query: 819 KI---QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++   Q  ++ + G+SK +   V+            A  L R +A VL GGGGGG+  +A
Sbjct: 810 RLGDSQGSVVAVAGVSKGRPVVVIATNASAREAGVKAGALVRTAAGVL-GGGGGGKDDLA 868

Query: 876 QSGGPNGNKADQAIAGVA 893
           Q GG N     +A+A V+
Sbjct: 869 QGGGQNPTAITEALAAVS 886


>gi|330466938|ref|YP_004404681.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809909|gb|AEB44081.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 892

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 339/912 (37%), Positives = 501/912 (54%), Gaps = 76/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I+  +L  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P +    
Sbjct: 2   KTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQSPPFPRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI  AWDL TK      
Sbjct: 62  SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDGAIPFAWDLATKSVEAGG 117

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD  R++ TVY +D+EA+ +W   +G+ A++I+R    DNFWSM   GP GPCSE+++
Sbjct: 118 FGLDPERIWATVYLDDDEAYDIWLH-TGVPAERIVRRGKKDNFWSMGIPGPAGPCSELYY 176

Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGL 230
           D+G     GL G  E  E RY+E WNLVFMQ+E    ++K+E  I   LPK +IDTGMGL
Sbjct: 177 DRGPEY--GLEGGPEVDEDRYLEFWNLVFMQYEIADVRSKEEFRIVGELPKKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + +++ + ++TG +Y             + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILERAAELTGKRYGAQSGQAANQSHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  +  LLP     M  +YPEL
Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397
                 I     +E++ F  TL  G  +LD  ++     GK   L+GD AF+L+DT+G P
Sbjct: 355 ATDFDRISAYAYAEEDAFLATLRAGTTILDTAITETKSAGK-PALSGDKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456
           +D+  +I   +GL  +D   F + + +QR+RA+A +    +G T+   + S+ +  G   
Sbjct: 414 IDLTLEIAAEQGL-DVDQEGFRRLMADQRARAKADAQARKTGHTDLSAYRSVLDAGGPVT 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GY     ++  +E                  S V+A++        AV G  VE+V D
Sbjct: 473 FTGY-----TETARE------------------STVRAVLGTDGPRAAAVEGDMVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID
Sbjct: 510 TTPFYAEGGGQQPDLGMITVGGGQVEVLDVQQPVPGLIVHRARVIRGEVRAGETGYAEID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD   +  +  + L+ +E
Sbjct: 570 TSRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTATGVAPSVLRDVE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+++  +L V   + + ++A   GA AL G KY D+VRVV V     G ++  LCGG
Sbjct: 630 QQVNEVLLADLEVHAFVTSLDEARRIGAMALFGEKYGDQVRVVEV-----GDYARELCGG 684

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THVS +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V
Sbjct: 685 THVSRSGQLGLVKILSESSIGSGVRRVEALVGMDAFNFLAREHLLVSRLAELYRVPSEQV 744

Query: 757 VGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
             RVE+   + R  + +L   + +L L        +  DV  ++++  E       + + 
Sbjct: 745 ADRVEQTVTQLRDAEKELEKLRAQLVLGGAAAFAAQAKDVRGVAYVGIEAPEGAAGNDVR 804

Query: 815 ALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
            L ++I+  I      ++ V      KAS+++ V      R   A DL + +      G 
Sbjct: 805 TLAQEIRGRIDAARPGVVAVASRSNGKASLVVSVNPAARSRGLAANDLVKAAFS----GR 860

Query: 868 GGGRPHMAQSGG 879
           GGG P +AQ GG
Sbjct: 861 GGGSPDLAQGGG 872


>gi|313897393|ref|ZP_07830936.1| alanine--tRNA ligase [Clostridium sp. HGF2]
 gi|312957763|gb|EFR39388.1| alanine--tRNA ligase [Clostridium sp. HGF2]
          Length = 875

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 339/914 (37%), Positives = 511/914 (55%), Gaps = 68/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP    +   
Sbjct: 7   SQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKNNRIANA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K     +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAISFAWEFLTSPKWIGFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +D +A+++W ++  +    I++  T+DNFW + E GP GP SEIF+D+GE 
Sbjct: 123 EKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIFYDRGEA 179

Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234
             P GL         E +RYIE+WN+VF QF+   + ++++   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPEGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKDYKELPQKNIDTGMGLERLV 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N+D DLF  +I A+E  T  +Y +  + +  RVI DH+R+ SF +ADG L +
Sbjct: 240 ALVQGGETNFDTDLFLPIIHATEAYTDARYADAQHKMAFRVIADHIRTVSFALADGALFS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +A+ L      M  L+P +   M   YP + +    I   +++
Sbjct: 300 NEGRGYVLRRVLRRAVRFAKKLNIQGAFMYKLVPVVYDIMKDFYPYMEEKLDYIARLVKA 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF  TL  G  LL  V+    +  +++G  AFKLYDT+G PL++  +I    G   +
Sbjct: 360 EEERFHATLADGERLLLQVMEEKKESRVIDGKTAFKLYDTYGFPLELTVEIAEESGYT-V 418

Query: 414 DIISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           D   F+  +++QR RARA    +  +GS + + + F+ +     + FIGYD+        
Sbjct: 419 DKDGFDAEMQQQRERARAARGDAESMGSQSIDLMEFTQE-----SSFIGYDVRH------ 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             S+ V A+ Q G  V+ A+S +  +VVFD T FYAE+GGQ+GD
Sbjct: 468 -----------------TSAKVIALFQDGVKVD-AISDEG-DVVFDTTVFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +G++  +    K      + H I++ G LR   ++ L +D + R  ++ NHS T
Sbjct: 509 SGTICAEGVQAVVDTTIKAPHKQHLSHVIIKEGELRVGDAVELQVDEKKRDIITSNHSCT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  I+GSH+ Q GS ++ + LRFD TH + +   +LK IE  VN  I  +  V 
Sbjct: 569 HLLQSALKQIVGSHIQQAGSFVSEEYLRFDFTHFEKVNEEQLKEIERLVNRYIGGHYAVS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  E+A  SGA AL   KY D VRVVS+     G  S   CGG HV++T EI +  I
Sbjct: 629 KVEMPIEEAKKSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGVCKI 683

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEEIWE 765
           +SE SI +GIRRI A TG  A +    +D+ L ++AS LK+      +  V   +EE  +
Sbjct: 684 ISEESIGSGIRRITAKTGYDAYAEFAKEDDTLHAVASDLKLKGISKVEEKVASVLEENVQ 743

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
             ++L  + A     L   DL  H + ++N    +I  +   D+K +K ++  ++ + ++
Sbjct: 744 LKKELAALQASM-FALKASDLVNH-MQELNGRQVLIERMDGADAKAMKDIVSNIRSQREN 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            ++ L  +  +K   V       +       DL R +A V   G GGGRP MAQSGG + 
Sbjct: 802 CVVFLASVHGDKVTFVAGADKAAVSGGIKCGDLVREAALVC-DGKGGGRPDMAQSGGKDA 860

Query: 883 NKADQAIAGVASFL 896
           +K ++A+  + + L
Sbjct: 861 SKVEEALHLIKNML 874


>gi|326329808|ref|ZP_08196128.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325952394|gb|EGD44414.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 894

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 342/923 (37%), Positives = 493/923 (53%), Gaps = 65/923 (7%)

Query: 3   NVSSIRTTFLEFFQKNG----HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           + + IR  F   F +N     H ++PS+SL+  +DP L+F N+GMVPFK  F GQ  P Y
Sbjct: 5   STAEIRRRFTAHFAENTEIGEHTVVPSASLL-LDDPNLLFVNAGMVPFKPFFLGQATPPY 63

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
              T+VQKC+R      D++ VG+T RH TFFEM GNFSFG YFKE AI LAW+L+TK  
Sbjct: 64  PRATSVQKCIRT----PDIEEVGKTTRHGTFFEMCGNFSFGDYFKEGAITLAWELVTKSV 119

Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
               F  D+  LY +V + DEEA  LWKK+SGL  D+I+R+  ++N+WSM   GP GPCS
Sbjct: 120 ADGGFGFDESVLYPSVLNGDEEAVALWKKVSGLPDDRIVRLPPSENYWSMGVPGPGGPCS 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTG 227
           EI  D+G     G     + G+RY+E WNLVFMQ      + ++       L +  IDTG
Sbjct: 180 EILIDRGPEF--GADRDWDAGDRYLEFWNLVFMQDNVVAARSKYDVDIDGPLAQTGIDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
           +GLER+A ++Q K+N Y+ D+   +I+ + ++TG KY     + V  RV+ DH+RSS  L
Sbjct: 238 LGLERVAYLMQGKSNMYETDVVFPVIEKAMELTGKKYGAAYEDDVRFRVVADHVRSSLML 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGYVLRR+MRRA+   RLLGY +P M  LLP    +MG  Y +L     
Sbjct: 298 IGDGVTPGNEGRGYVLRRLMRRAIRNMRLLGYEDPAMPELLPISRDKMGETYTDLHTEWD 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQD 403
            I+    +E+E F KTL  G  + D   + +         GD AF+L+DT+G P+D+  +
Sbjct: 358 RIKRVADAEEEAFRKTLAAGTQIFDLAATEVKSSGSTTFTGDKAFQLHDTYGFPIDLTLE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +    GL  +D   F   + EQR RA+A +    G      ++  + +  G T +  Y  
Sbjct: 418 MAAEAGLE-VDEAGFRGLMTEQRERAKADARAKKGQHADLTVYRGILDTNGPTDWQAYTT 476

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L              +  P+           A++++G+ V+     +  E+V D+TPFYA
Sbjct: 477 LD------------TESKPV-----------ALLREGKPVDVLGPEEIGEIVLDRTPFYA 513

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRR 581
           E+GGQ  D G    DG RL++ DVQ+  +G+ VH   V  G      SLV   +D + R 
Sbjct: 514 ESGGQSADAGIIEFDGGRLEVVDVQRPVKGLVVHQVRVVDGEFHGGESLVHAKVDPEWRL 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                HS TH++H AL  +LG    Q+GS   P  LR D   +K +T  ++  IE+  N+
Sbjct: 574 GARQAHSGTHVVHAALREVLGPTALQSGSFNRPGYLRLDYGWTKGLTPEQMHEIEEVSNN 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVS 700
            +  +LPV    M    A   GA AL G  Y+D +VRVV +    GG  S  LCGGTHV 
Sbjct: 634 ALRADLPVSWDYMTLPQAKEWGAIALFGETYDDSKVRVVEI----GGPWSRELCGGTHVD 689

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            + +I  + + SE+S+ +G RRIEA TG     +L  + + +  L   LK   G+VVGRV
Sbjct: 690 HSAQIGTIVVTSEASVGSGNRRIEAYTGVEGFKYLARERDVVSELNLLLKTKSGDVVGRV 749

Query: 761 EEIWEEYRKLQL-IHAKRKLQLNVEDLSCHKIA-DVN---FMSHIISEVDSKELKSVMDA 815
            ++ E  +  +  I   R  QL     S    A DVN    ++  +  V   + +++   
Sbjct: 750 SDLMERLKAAEKEIARARTAQLLASGGSIAASAVDVNGVQVVAQRVPGVGGGDARTLAQD 809

Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           ++ ++      ++L G + +K A V  V    +     A DL +  A V+ GG GGG+P 
Sbjct: 810 VRSRLGDAPAAVVLFGDADDKVAVVAAVNPAGIAKGVKAGDLIKELAPVV-GGRGGGKPD 868

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
            AQ GG    + D+A+A V S +
Sbjct: 869 FAQGGGTEVGRIDEAVAKVKSLV 891


>gi|306824980|ref|ZP_07458323.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432807|gb|EFM35780.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 872

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 348/926 (37%), Positives = 502/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G    + +++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  +     L   +TDVQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDAAGNLVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK +A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKVVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R LQ  +A  K K            + + N   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQVRHLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|317013025|gb|ADU83633.1| alanyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 847

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 318/833 (38%), Positives = 473/833 (56%), Gaps = 56/833 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQVLLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFVPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K  + +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKETVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L+HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y   +F+GY+               C   P
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------C---P 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S  K I        +A   Q+V V+ ++TPFYAE GG +GD G  + D    
Sbjct: 458 AKALGFFDSDFKEIT-------DAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 AIVSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A  
Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q    K  + +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              DL   KI  V+ +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 738 ---DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|261839960|gb|ACX99725.1| alanyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 847

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 332/884 (37%), Positives = 488/884 (55%), Gaps = 69/884 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH +  S  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEYKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y   +F+GY+    L +   F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECLAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
              P                           Q+V V+ ++TPFYAE GG +GD G    D
Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGVLFKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRILKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q    K 
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ----KA 733

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            + +   DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+    KE +  
Sbjct: 734 PVSM---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERI 785

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            L    ++   + N    A   A++L GG GGGR   A +GG +
Sbjct: 786 TLACGVKNAPIKANV--WANEVAQIL-GGKGGGRSDFASAGGKD 826


>gi|281420549|ref|ZP_06251548.1| alanine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405322|gb|EFB36002.1| alanine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 887

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 336/939 (35%), Positives = 506/939 (53%), Gaps = 99/939 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R +F +FF+  GH+++PS+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 1   MMTANEVRESFKKFFEGKGHKIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60

Query: 61  V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI +AW+ LT+   
Sbjct: 61  RRVDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLTEILK 120

Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV+        + D EA   W K   + AD II    +DNFW M +TGPCGP
Sbjct: 121 LNPADLYVTVFEGSKEEGLERDNEAAGYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D +       +PG    +++  + IEIWN+VFMQ+ ++       LP   IDTG
Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNH 272
           MG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      +  
Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKEIEAISGKKYGFTTPTGENGEGKDEQEKIDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV  DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+  L  
Sbjct: 299 RVCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVNVLVE 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAF 388
           +MG+A+PEL   + LI   ++ E++ F +TL++G+ LL+G +  L   GK + L+G  AF
Sbjct: 359 QMGAAFPELPAQQELITRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTQ-LDGVSAF 417

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + ++C      +D   FN+ +++Q+ RAR ++  + +G     W  L
Sbjct: 418 RLFDTYGFPLDLTE-LICRENGYTVDAAGFNEEMKKQKERAR-NAAAVENGD----WEVL 471

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           KE  G   F+GYD       +   RKV  +K                             
Sbjct: 472 KE--GDQNFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 503

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   +Q+ D  K+     +H  IV+       
Sbjct: 504 --YELVLDNTPFYGEMGGQVGDKGVLVSENETIQVIDT-KRENNQSIH--IVKELPKDVN 558

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D +NR   + NH+ATHLL + L  +LG HV Q GS +  D LRFD +H + +T
Sbjct: 559 ADFMACVDIENREGSAANHTATHLLDYCLKQVLGDHVEQKGSYVDKDTLRFDFSHFQKVT 618

Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I  + P+   R    E+A   GA AL G KY D+VRVV        
Sbjct: 619 DEELRKVEHMVNEMIRADYPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFG----- 673

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-QDE--KLKS 744
             S+  CGG H   TG+I    I+SESS+ AGIRRIEA+TG+     + G QD    LK 
Sbjct: 674 -PSAEFCGGIHAKGTGKIGFFKIISESSVAAGIRRIEALTGKACEEAIYGLQDTIVALKG 732

Query: 745 LASFLKVSQGNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           L +  K  +G +   ++E        E+++   +  AK KL  N ++++  K+       
Sbjct: 733 LFNNAKDLEGVIRKYIDEHDALKKDVEKFQAQAVERAKDKLVENAKEINGVKVVTA---- 788

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLA 856
             +  ++    K ++  +++ +   +I +VG     K  + ++ ++D++     NA  + 
Sbjct: 789 --VLPMEPAAAKDLVFKVREALPENMICVVGSVYNDKPMLSVMFSDDMVKDHGLNAGKMI 846

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           R +AK++  GGGGG+PH AQ+GG N +    A+  V   
Sbjct: 847 REAAKLI-QGGGGGQPHYAQAGGKNKDGLSAAVDKVVEL 884


>gi|168493286|ref|ZP_02717429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|221232124|ref|YP_002511277.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|183576772|gb|EDT97300.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|220674585|emb|CAR69148.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 872

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 347/926 (37%), Positives = 506/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAAILKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|15901237|ref|NP_345841.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111658578|ref|ZP_01409235.1| hypothetical protein SpneT_02000253 [Streptococcus pneumoniae
           TIGR4]
 gi|20532258|sp|Q97Q48|SYA_STRPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14972870|gb|AAK75481.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 872

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 347/926 (37%), Positives = 507/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+   AVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVDNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQPKIQELLDAVAGKL 872


>gi|227894659|ref|ZP_04012464.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227863554|gb|EEJ70975.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 879

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 350/933 (37%), Positives = 525/933 (56%), Gaps = 96/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF+++AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDQAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +D  + K+W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKDKLYCTVYPKDVASQKVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTPGKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LL  ++    K  D+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLSLLADLIDKAKKSPDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  ++ Q+ RAR     L S G  +    ++K+K              S+
Sbjct: 415 GLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SE 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F       + ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ
Sbjct: 460 F----EYGVYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581
           + D G     DG +  ++TDVQ       +H       VE+G        VL ID + R 
Sbjct: 507 VADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKIDKERRE 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L  +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E  VN 
Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEQLVNQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +
Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T +I +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K ++  N++ ++
Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEDVKATKPDNIIDKI 736

Query: 761 E----EIWEEYRKLQLIHAK----RKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806
           +    ++ E  ++++ ++ K    +  Q+        DL+    IADVN M+        
Sbjct: 737 DSLESDLHESQKQVEALNKKINQAKAGQIFDDVKQAGDLTVIATIADVNSMN-------- 788

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
            +L+ + D  +   +S +++L   + + KA+++I + +  LDR   A DL + +A +  G
Sbjct: 789 -DLRELADNWKSSNKSDVLVLAA-NNDGKANMIISLDKKALDRGLKAGDLIKKAAPIF-G 845

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGRP+MAQ+GG      + AI  V   + K
Sbjct: 846 GGGGGRPNMAQAGGKKPEGLNDAIKAVIDEISK 878


>gi|225857018|ref|YP_002738529.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|225726317|gb|ACO22169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 872

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 348/926 (37%), Positives = 507/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLVID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDVVAGKL 872


>gi|134098622|ref|YP_001104283.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291009600|ref|ZP_06567573.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|205830197|sp|A4FBD3|SYA_SACEN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|133911245|emb|CAM01358.1| putative alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 890

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 334/922 (36%), Positives = 507/922 (54%), Gaps = 72/922 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   F E F+K GH ++PS+SLI  +DPTL+F N+GMV FK  F G     Y   T++QK
Sbjct: 6   INQRFTEHFRKAGHTVVPSASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR G    D+D VG+T RH+TFF+M GNFSFG YFKE A++ AW LLT       +  D
Sbjct: 65  CVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAMEHAWGLLTSSQADGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TV+++DEEA  LW+K++G+ A++I      DN+W M   GP GPCSEI++D+G 
Sbjct: 121 PERLWVTVFEKDEEAAALWQKVTGIPAERIQVRDAKDNYWDMGVPGPGGPCSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQ------FEQQNKQERFILPKMSIDTGMGLERMAT 235
              G   G   + +RYIEIWNLVFMQ        ++       LP  +IDTGMG+ER+A 
Sbjct: 181 KY-GREGGPVVDEDRYIEIWNLVFMQDIRGELPPKEGHPPIGELPTKNIDTGMGVERVAC 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E+++G  Y  N  + V  RVI DH RS   L+ DG+ P 
Sbjct: 240 LLQGVENVYETDLVRPVIAKAEELSGRSYGANHEDDVRFRVIADHARSGVMLVGDGVTPG 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVLRR++RR +   RLLG  EP++      +   M  +YPEL+     I+  +R+
Sbjct: 300 NEARGYVLRRLLRRIIRSTRLLGVHEPVLGEFAAVVRDAMAPSYPELVTEFDRIDSVMRN 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++ F  TL  G  + D  ++   K     L G  AF+L+DT+G P+D+  ++   +GL+
Sbjct: 360 EEDAFLSTLTAGSKIFDLAVADTKKAGGTQLAGAKAFQLHDTYGFPIDLTLEMASEQGLS 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            +D   F + + EQR RA+  +    SG  +   + +L +++G T+F+GY  L+      
Sbjct: 420 -VDEHGFRELMSEQRRRAKEDAKSRKSGHGDLSTYRTLLDQHGTTEFLGYTDLQ------ 472

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V  ++  G   + A +G +VE++ D+TPFYAE GGQ+ D
Sbjct: 473 -----------------AQSRVLGLLVDGVPAKSAAAGTEVELILDRTPFYAEGGGQIAD 515

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG   G G+ +++ DVQ+   G+FVH A V  G L  + SL   +D + R  +  +HSAT
Sbjct: 516 TGRLTGPGVEVEVHDVQRAVPGLFVHRAKVTAGELGVDTSLEAAVDSKRRHAIERSHSAT 575

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H A+ +  G   +Q GS  +P  +RFD T    ++ A L  +E+ VN  +  ++ V 
Sbjct: 576 HLVHAAVRSAYGKRAAQAGSLNSPGRMRFDFTAPAAVSGAVLGGVEEEVNSYLQNDVEVQ 635

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +     + A+  GA AL G KY D+VRVV     D G +S  LCGGTHV   G++ ++ +
Sbjct: 636 SYTTTMDRAMELGAVALFGEKYGDQVRVV-----DMGDYSRELCGGTHVGRIGQLGVVKL 690

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GNVVGRV--- 760
           V++SS+ +G+ R+EA+ G  A  H+  +   +  LA   KV           VV R+   
Sbjct: 691 VADSSVGSGVHRVEALVGMDAMRHISKEHLLVSRLAEQFKVPAEELPERIAGVVSRLRSA 750

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E+  E+ R  Q++ +  +L     D+  H +  V     +   VD   L+++   ++ ++
Sbjct: 751 EKELEQLRVAQVLQSAGELAGKGTDV--HGVTLV--AEQVPDGVDGGALRALAGEVRGRL 806

Query: 821 QS--GIIMLVGISKEKKASVLIVVT--EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            S   ++ L     +K + V+ V T  +DL  +   + +   +A+V  GG GGG+P MAQ
Sbjct: 807 GSRPAVVALFSADGDKVSFVVGVNTPAQDLGLKAGKL-VPSFAAEV--GGRGGGKPDMAQ 863

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG N      AIA + + L +
Sbjct: 864 GGGSNPAGITAAIAALRTGLDQ 885


>gi|317968219|ref|ZP_07969609.1| alanyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 878

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 349/907 (38%), Positives = 508/907 (56%), Gaps = 71/907 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ+       T+ 
Sbjct: 9   AEIRAAFLDFYEQRGHKPMASASLVP-EDPTVLLTIAGMLPFKPVFLGQQPRPSARATSS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F +  + 
Sbjct: 68  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTTVFGISPKN 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183
           L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D + E  
Sbjct: 124 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELG 183

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G+    E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NN
Sbjct: 184 DEGI--DLEDDSRFIEFYNLVFMQYNRDAEGSLTPLENRNIDTGMGLERMAQILQKVPNN 241

Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 242 YETDLIYPLIETAAGLAGVDYRQLDPKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF +
Sbjct: 302 LRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERQEVILSELKREEARFLE 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ Q+I    GLA +D+  F Q
Sbjct: 362 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLDGFEQ 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR RA+A ++ +   T +     +     AT+F GY+LL                 
Sbjct: 419 AMEAQRQRAKAAAVSIDL-TLQDAIDQMAADLEATRFRGYELLDH--------------- 462

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   SS V+A+V  GE  E A +G  V++V D TPFY E GGQ+GD G   GDG+ 
Sbjct: 463 --------SSSVQALVVNGEPAERAEAGDSVQLVLDTTPFYGEGGGQVGDRGVLSGDGLI 514

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + I  V +    +FVH   VERG +     +   +D   RR+   NH+ATHLL  AL  +
Sbjct: 515 VVIEAVSRN-RSVFVHSGRVERGSVSVGDVVHGQVDRACRRRAQANHTATHLLQSALKQV 573

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +   + Q GS +  D LRFD    + IT+AEL+ IE  +N  IA+   +  + M  E A 
Sbjct: 574 VDPGIGQAGSLVDFDRLRFDFHCPRAITAAELEQIETLINGWIAEAHSLEVQEMTIEKAK 633

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA A+ G KY+D VRVV V        S  LCGGTHVS+T EI L  IVSES + AGI
Sbjct: 634 AAGAVAMFGEKYSDVVRVVDVP-----GVSMELCGGTHVSNTAEIGLFKIVSESGVAAGI 688

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778
           RRIEA+ G    ++L  +D  +K L    K     +V RV  +  E +  Q  L  A+ +
Sbjct: 689 RRIEAVAGAAVLAYLNERDAVVKQLGERFKAQPAEIVERVLTLQSELKASQKALTSAREE 748

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           L L        +   +     +IS +D  E   +  A Q     G++  +G    + A+V
Sbjct: 749 LALAKSAALASQAEAIGDFQVLISRLDGVEGGGLQSAAQ-----GLVDQLG----EGAAV 799

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSGGPNG 882
           ++    D  D    + +A     V+  G   G                RP++AQ+GG +G
Sbjct: 800 VLGGLPDPSDLGKVILVAAFGKGVIAKGQQAGKFIGAVAKACGGGGGGRPNLAQAGGRDG 859

Query: 883 NKADQAI 889
              D A+
Sbjct: 860 AALDAAL 866


>gi|328462753|gb|EGF34642.1| alanyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 879

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 346/929 (37%), Positives = 519/929 (55%), Gaps = 92/929 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L +
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 123 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG LP
Sbjct: 237 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE  ++
Sbjct: 297 SNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIENVIQ 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF   LD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     GL
Sbjct: 357 NEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F+  ++ Q+ RAR     L S G  +    ++K+K              S F 
Sbjct: 417 K-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SVFE 461

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ+ 
Sbjct: 462 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 508

Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585
           D G     DG +  ++TDVQ       +H   +   IL  E     VL ID + R  L  
Sbjct: 509 DHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I
Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQI-----GDFSSEFCGGTHCSNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K ++  N++ +++ + 
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810
            +    Q        Q+N               DL+    +ADVN M+         +L+
Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + D  +   +S +++L     + KA+++I + +  LD+   A DL + +A +  GGGGG
Sbjct: 792 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIF-GGGGG 849

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP+MAQ+GG      + AI  V   + K
Sbjct: 850 GRPNMAQAGGKRPEGLNDAIKAVIEEISK 878


>gi|15807291|ref|NP_296021.1| alanyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|20532268|sp|Q9RS27|SYA_DEIRA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|6460111|gb|AAF11848.1|AE002062_1 alanyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 890

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 346/912 (37%), Positives = 508/912 (55%), Gaps = 78/912 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
             + IR  +L FF+  GH  LPS S I   DPT +FT +GM PFK  F G     +    
Sbjct: 6   TTAEIRERYLYFFETKGHLRLPSHSTI-APDPTTLFTVAGMQPFKENFMGAPAVFDGQPS 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + VTT QKCVR G    D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT  +
Sbjct: 65  KRVTTAQKCVRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIHWAWEFLTGPE 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
              +D+ ++Y+TVY +D+EAF  W +  GL A+ I R   ++NFW          GPCGP
Sbjct: 121 WMGMDKDKMYVTVYKDDDEAFGYWTQDIGLPAEHIHRFDADENFWPANAPLEGPNGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMS 223
           CSEI++D+GE       G    + E  R++E+WNLVF Q+++Q+           LP  +
Sbjct: 181 CSEIYYDRGENYGDDTWGDYYQTRESARFLEVWNLVFPQYDRQDLDASGQPVLKDLPFKN 240

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+FK +++   +++G  YEG   V+HRV+ +H+RS S
Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFKPIVERVAELSGKPYEGETSVSHRVVAEHIRSVS 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            ++ADG   +N GRGY  R+IMRRA+ +  +LG  EP +  L+  +   MG AYPEL   
Sbjct: 301 MIVADGTAFSNTGRGYTARKIMRRAIRHGYMLGLREPQLYRLVELVVDSMGGAYPELQHN 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +E ++R+E+E+F KTL+ G+  L G+LS + K   L G  AF+LYDT+G P+D+ ++
Sbjct: 361 QSRVEASVRAEEEQFLKTLEGGIKRLGGLLSGMEKGSTLVGKDAFELYDTYGFPVDLTKE 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSL----GLGSGTTEKIWFSLKEKYGATQFIG 459
           I    G++ +D   + ++LE  +  ARA S      L  G  E +     +   ATQF+G
Sbjct: 421 IAEEYGVS-VDEAGYAESLEHAQEIARAGSKYGKSELFGGHQEAL-----DGLPATQFVG 474

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD   G      D +VL                 A++  GE +    +G +  VV  QTP
Sbjct: 475 YDQTSG------DGQVL-----------------ALLSGGERLSHLPAGSEATVVLSQTP 511

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GG++GDTG    DG    + D QK  +G+F+H  +VE+G L+ E + V  +    
Sbjct: 512 FYGEGGGEVGDTGRLEWDGGAGIVRDTQKTKQGVFLHDVLVEQGELK-EGTRVRGVVSPE 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  +H+ATHLLH AL  +LG  V Q GS +  D LRFD +H   +++ E+  +E  V
Sbjct: 571 RAAIQRHHTATHLLHAALRAVLGGGVQQKGSRVAADQLRFDFSHGAAMSAEEIAQVETLV 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVH---SSALCG 695
           +  ++ N PV  R M   +A A+GA AL G KY D VRVV VE + D G H   S  LCG
Sbjct: 631 SRWVSANFPVSWREMPIAEAKAAGATALFGEKYGDVVRVVRVEGDVDFGGHAVSSMELCG 690

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HVS TG+I    IVS+ ++ AG+RRIEA+ G++A + L G+       A+ L  S   
Sbjct: 691 GAHVSRTGDIGAFVIVSDENVAAGVRRIEALAGEQATAWLRGRLNASAKAAALLNTSPEG 750

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKE 808
           +  RV  +  + +  +   A+ + QL    +          ++      S  +S ++  E
Sbjct: 751 LEERVSGLQGQLKAAEKETAQARRQLAEAQMGGGGSAAQTRELGGFKVASLKLSGIEGNE 810

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGG 866
           L+   D L    QSG  ++V I+ +K   +++  T+D + +       +L +K+   GGG
Sbjct: 811 LRGAADKLLD--QSGADLVV-IASDK--GLVVKATKDAVAK--GAHAGQLVSKLAAAGGG 863

Query: 867 GGGGRPHMAQSG 878
            GGGRP MAQ+G
Sbjct: 864 KGGGRPDMAQAG 875


>gi|171779579|ref|ZP_02920535.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281681|gb|EDT47115.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 872

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 343/916 (37%), Positives = 505/916 (55%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT    FD  +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                    L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +R
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFIEKIVR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G  +LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++   +G
Sbjct: 358 REEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA  +  GS G   +   S+ E+              S F
Sbjct: 417 FK-IDHAGFEAAMKEQQERARASVVKGGSMGMQNETLSSITEE--------------SVF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             E+ +VL             S +  I+   E  E    GQ + +VF +TPFYAE GGQ+
Sbjct: 462 SYEE-EVL------------ESTLSVIIADKERTEAVSEGQAL-LVFAKTPFYAEMGGQV 507

Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   I  ++ DVQK   G  +H   V    L    +  L ID + R  +  N
Sbjct: 508 ADHGVIKNDKGDIVARVIDVQKAPNGQALHTVEV-LASLSVGTTYTLEIDAKRRHSVIKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   
Sbjct: 567 HTATHLLHAALHHVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIWNA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV+T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI 
Sbjct: 627 IPVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+TG+ A      ++E LK++A  LKV Q   V  +V  + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           +  KLQ  +A+ K +            + + N +  I S+V   D+  L++  D  ++K 
Sbjct: 742 QLHKLQKENAELKEKAAAAQAGNVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L     EK   ++   ++D+    +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           +  K    +A VA  L
Sbjct: 857 DAAKIADLLAAVAENL 872


>gi|78187794|ref|YP_375837.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|123582508|sp|Q3B1I7|SYA_PELLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78167696|gb|ABB24794.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 887

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 338/889 (38%), Positives = 497/889 (55%), Gaps = 91/889 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y      QK
Sbjct: 6   IRQSFLDFFAAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRPYTRAADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT+ + L   RLY
Sbjct: 66  CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTEVWKLPADRLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TVY +D+E+ ++W + + +    I+R    DNFW M ETGPCGPCSEI  D     P  
Sbjct: 126 ATVYHDDDESARIWAEKTSIEPSHILRFGDKDNFWEMGETGPCGPCSEIHID---LTP-- 180

Query: 187 LPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             GS +E       R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K 
Sbjct: 181 -DGSGKELVNAGDHRAIELWNLVFIQYDRQPDGRLEPLPQRHVDTGMGFERVCAVMQSKA 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L Q   ++TG+ Y    +G   +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 240 SNYDTDVFLPLFQRLSELTGVTYGASMDGRQDIAMRVIADHARTLTFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y+R LG + P++  L+  L   MG  + EL   +  +E  +R+E+E 
Sbjct: 300 GYVLRRILRRALRYSRDLGCSGPILHQLVGTLADSMGDVFGELRDRRDAVERIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ +   + +   +    +L G+ AFKLYDT+G P D+ + +    GL  +D 
Sbjct: 360 FITTLDRGMEIFGELAAATARAGGRMLKGEDAFKLYDTYGFPFDLTRLLATEAGL-DVDG 418

Query: 416 ISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             F   ++EQ+SRAR+        G G+G+ +  WFS      AT F+GYD L       
Sbjct: 419 EGFEHCMQEQKSRARSDRREKQQTGDGAGSWQ--WFSDSH---ATTFLGYDRL------- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                    P        S+I+ A    G ++          +V  +TPFYAE+GGQ GD
Sbjct: 467 -------AMP--------STIIGAAHASGHLL----------LVLAETPFYAESGGQTGD 501

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE------MSLVL--------TID 576
            G       R+Q+TD +K  +  FVH  +V R   +        M +V+        +++
Sbjct: 502 RGWLESAAYRMQVTDTRKDGDS-FVH--VVSRAFDKVRDTEIDPMDIVIEEATPVDASVE 558

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R++   NH+ATHLLH AL  ILGSHV Q GS +T + LRFD +H   +T  E++++E
Sbjct: 559 RILRQETERNHTATHLLHAALRRILGSHVQQKGSFVTSERLRFDFSHFSKMTPEEIQAVE 618

Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
             VN+ I     V     +  ++AIA GA A  G KY +RVR+V V     G+ S+ LCG
Sbjct: 619 AEVNEHIRCAAHVSKHADLPYDEAIAKGALAFFGDKYAERVRMVEVP----GI-SAELCG 673

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV + G+I +  I+SESS  AGIRRIEA+TG+ A   L  +  +L+ +   LK+    
Sbjct: 674 GTHVDNIGQIGIFKIISESSAAAGIRRIEALTGRAAEMLLWKEYHELQDVRQQLKLKADE 733

Query: 756 VVG-RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKEL 809
            V  ++ E+ EE ++L+   A  K    ++ L     S  +I     ++ ++  VD+  L
Sbjct: 734 AVAEKLAELQEEKKELEKELAGLKSASVIDALVRDATSAEEIGGCRIVTKVLEGVDADTL 793

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +S   AL++K+     +L  I+  K +  L   + D+  +   +D  +L
Sbjct: 794 RSAAMALREKLPVSAGLLCSIADGKVS--LAAFSSDVAVKEKGIDAGKL 840


>gi|291570537|dbj|BAI92809.1| alanyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 878

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 349/905 (38%), Positives = 506/905 (55%), Gaps = 57/905 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ        TT 
Sbjct: 13  SEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNRATTS 71

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L   R
Sbjct: 72  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPPER 127

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D      
Sbjct: 128 LIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYD-FHPER 186

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ   NNY
Sbjct: 187 GDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPNNY 246

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ +  + G+ Y   +    V+ +VI DHLR+   LIADG+  +N GRGY+L
Sbjct: 247 ETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGYIL 306

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G        +     +     YP   + + +I+  L+ E+ RF +T
Sbjct: 307 RRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFLET 366

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  +L    + E ++G  AF LYDT+G PL++ Q+I    GL  +D+  F   
Sbjct: 367 LERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFEAE 423

Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +  QR R++A   ++ L   T +     L E+   T F+GYD                  
Sbjct: 424 MSAQRKRSQAAHETIDL---TVQGSLDKLAEQIHPTAFLGYDF----------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
           P  + T      V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G      +
Sbjct: 464 PDSEAT------VEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV+K ++ IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL  
Sbjct: 518 IVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E+A
Sbjct: 577 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRVV       GV S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 637 KNKGAIAMFGEKYAAVVRVVDYP----GV-SMELCGGTHVTNTAEIGLFKIVSETGIAAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ GQ    +L  +D  +K L+  LK     +  R   +  E +  + QL   K 
Sbjct: 692 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 751

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +   D    +  ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S  K
Sbjct: 752 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVSDGK 811

Query: 835 ---KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               A+   VV +D   +  A       AK L GGGGGGRP++AQ+GG + +K  +A++ 
Sbjct: 812 VSLVAAFSPVVIKD--KKLQAGKFIGAIAK-LCGGGGGGRPNLAQAGGRDPSKLPEALST 868

Query: 892 VASFL 896
             S L
Sbjct: 869 AKSQL 873


>gi|86142096|ref|ZP_01060620.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85831659|gb|EAQ50115.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 849

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 339/902 (37%), Positives = 499/902 (55%), Gaps = 82/902 (9%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           + S+ ++  NDPTLMFTN+GM  FK  F G   P    VT  QKC+R  GKHNDL+ VG+
Sbjct: 1   MASAPMVIKNDPTLMFTNAGMNQFKEFFLGNGTPKDTRVTDTQKCLRVSGKHNDLEEVGK 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE-------- 134
              HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+ +LY+T+++ D+        
Sbjct: 61  DTYHHTMFEMLGNWSFGDYFKQDAIDWAWELLTEVYKIDKNKLYVTIFEGDDSEGLERDA 120

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPGS--- 190
           EA+ +WKK   ++ D+I+     DNFW M + GPCGPCSEI  D + E      PG+   
Sbjct: 121 EAYDMWKK--HVAEDRILNGNKKDNFWEMGDQGPCGPCSEIHVDLRSEEEKAKTPGAELV 178

Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250
           + +  + +EIWNLVF+QF ++       LP   IDTGMG ER+  VLQ+KT+NYD D+F 
Sbjct: 179 NADHPQVVEIWNLVFIQFNRKADGSLENLPARHIDTGMGFERLCMVLQDKTSNYDTDVFT 238

Query: 251 HLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
            LI+  E +   KY   E  +I   RVI DH+R+ +F IADG LP+N G GYV+RRI+RR
Sbjct: 239 PLIREIETIAHSKYGQSEETDIA-IRVIADHVRAVAFSIADGQLPSNTGAGYVIRRILRR 297

Query: 308 AMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           A+ Y    L   EP +  L+  L  EM  A+PEL + + LI   ++ E++ F +TLD+GL
Sbjct: 298 AVRYGFTFLNTKEPFIYKLVSVLVDEMSKAFPELKKQQNLIFNVIKEEEQSFLRTLDQGL 357

Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
           VLLD +++     E+ +G  AF+LYDT+G P+D+   IL  +G   +D  +F   L++Q+
Sbjct: 358 VLLDSIIAETKGKEV-SGAKAFELYDTYGFPIDLTALILSEKGYT-LDEKAFQTELQKQK 415

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
            R+RA      +G  E   +++ E+    +F+GYD L+    +   RK+  +K       
Sbjct: 416 DRSRA------AGKIEAGDWTIVEEDSEEEFVGYDTLQTPVRITRYRKINTKK------- 462

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITD 545
                                G + ++VF+ TPFYAE GGQ+GD G     +G  + ITD
Sbjct: 463 --------------------EGDQYQLVFNLTPFYAEGGGQVGDKGYLEAANGDVVYITD 502

Query: 546 VQKKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
             KK   + +H   + + + +    +    +D + R +   NHSATHLLH AL  +LG+H
Sbjct: 503 T-KKENNLIIH---LSKNLPKNLNETFTAVVDAKQRHRTQANHSATHLLHQALRAVLGTH 558

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASG 663
           V Q GS +    LRFD +H   +T+ ELK IE  VN  I + LP+   R +  + AIA G
Sbjct: 559 VEQKGSMVHSGYLRFDFSHFSKVTAEELKDIEQFVNARIQEQLPLEEQRAIPYDQAIAEG 618

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VR +          S  LCGGTH  +T +I    I SES++ +GIRRI
Sbjct: 619 AIALFGEKYGDAVRTIRFG------KSMELCGGTHAENTADIWYFKIKSESAVASGIRRI 672

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----LIHAKRK 778
           EAITG     +   QDE+L+++ S L  ++      +E +  E  +L+     L+  K K
Sbjct: 673 EAITGDAVMQYFEEQDEQLEAVRSLLNNAK-EPAKSIESLQSENNELKKQLEVLLAEKAK 731

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
              NV+     +I +VN +  +  EV  D+  +K +   L  ++   + +L+   +  KA
Sbjct: 732 ---NVKGELKTEIQEVNGVQFLAKEVDLDANGIKDLAFQLGGEVDD-LFLLLASRQGGKA 787

Query: 837 SVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +   + ++L      NA  + R   K +  GGGGG+P  A +GG N +   QA+  V +
Sbjct: 788 LLSCYIDKELAKAKDLNAGTIVRELGKFI-QGGGGGQPFFATAGGKNPDGIAQALNEVKT 846

Query: 895 FL 896
           +L
Sbjct: 847 YL 848


>gi|55820540|ref|YP_138982.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822431|ref|YP_140872.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81559736|sp|Q5M126|SYA_STRT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81560908|sp|Q5M5L5|SYA_STRT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55736525|gb|AAV60167.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738416|gb|AAV62057.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 872

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 335/912 (36%), Positives = 507/912 (55%), Gaps = 72/912 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FDL +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGEE 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+A
Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293
            V+Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I DG LP 
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ +  IE+ ++ 
Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKRDFIEKIVKR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  +LD +L++L   GKD +   D+ FKLYDT+G P+++ +++    G 
Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F  A++EQ+ RARA  +  GS              G       ++   S+F+ 
Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E                  S +  IV      +   SGQ + +VF+QTPFYAE GGQ+ D
Sbjct: 464 E-------------AETAESRLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVAD 509

Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G    A G  +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 510 HGTISDAAGTTV-ARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIIKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
              LQ  +A  K K            + + N + +I S+V   D+  L++  D  ++   
Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L    +EK   ++   +E++    +A +L ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIREKVNVLVASKSENV----HAGNLIKVLAPIV-SGRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVA 893
            N     ++ VA
Sbjct: 858 ANSIQDLLSAVA 869


>gi|283458020|ref|YP_003362628.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134043|dbj|BAI64808.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 895

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 338/916 (36%), Positives = 508/916 (55%), Gaps = 65/916 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQK
Sbjct: 6   ISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT       F LD
Sbjct: 65  CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKGGFGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++T+Y+ D+EAF +W    G  A++I R+   +N+WS  + GP GP SEIF+D+G 
Sbjct: 121 PERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMAT 235
              G   G + + +RYIEIWNLVFMQ+++     K +  IL   PK +IDTG+G+ER+A 
Sbjct: 181 AY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGVERLAM 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286
           +LQ   N Y+ D  + ++ A+ +++G KY G+         + V  RV+ DH+RSS  LI
Sbjct: 240 LLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRSSLMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +      
Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVADDFER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F  T++ G   L+  ++   KD    ++G  AF L+DT+G P+D+  ++
Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPIDLTLEM 419

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G+  +D  +F + + EQR RA+A +               K K GA      DL  
Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADA---------------KAKKGAFA----DLSE 459

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
             K + E   +      +       + ++AI+  G  V  A +G K+EVV D+TPFYAEA
Sbjct: 460 LRKLVDERGSIFTGYTELR----TETKLRAILVDGVSVPAAKAGDKIEVVLDETPFYAEA 515

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G + T   +V  +D Q RR   
Sbjct: 516 GGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQRRRDGE 575

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG+  +Q GS      LRFD   S+ ++ +  + +E+  N  I 
Sbjct: 576 KAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWSEGLSESAKREVEEVANLAIR 635

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N  V+TR M   +A A GA +L G KY D VRVV +    GG  S  LCGGTHV S+ E
Sbjct: 636 DNHEVITREMPLAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHVGSSAE 691

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I  L +++E S+ +G RR+EA+ G  + +HL  +   +  L   +KV S  ++  ++ + 
Sbjct: 692 IGSLTLLTEGSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPEKINQT 751

Query: 764 WEEYR--KLQLIHAKR-KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + +  + +L   +R KLQ     L  +   I  V  ++H   E+D+  ++ +   L+ 
Sbjct: 752 LAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLALDLRS 811

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  S   ++  +       V++V T +        A  L R++A VL GGGGGG+  +AQ
Sbjct: 812 RFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVL-GGGGGGKDDVAQ 870

Query: 877 SGGPNGNKADQAIAGV 892
            GG + +K   A+  V
Sbjct: 871 GGGQDASKIGAALDAV 886


>gi|168484561|ref|ZP_02709513.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172042221|gb|EDT50267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
          Length = 872

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/925 (37%), Positives = 506/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGEL 872


>gi|284050469|ref|ZP_06380679.1| alanyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 876

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 349/905 (38%), Positives = 506/905 (55%), Gaps = 57/905 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ        TT 
Sbjct: 11  SEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNRATTS 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L   R
Sbjct: 70  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPPER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D      
Sbjct: 126 LIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYD-FHPER 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ   NNY
Sbjct: 185 GDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPNNY 244

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   +I+ +  + G+ Y   +    V+ +VI DHLR+   LIADG+  +N GRGY+L
Sbjct: 245 ETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGYIL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G        +     +     YP   + + +I+  L+ E+ RF +T
Sbjct: 305 RRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFLET 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  +L    + E ++G  AF LYDT+G PL++ Q+I    GL  +D+  F   
Sbjct: 365 LERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFEAE 421

Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +  QR R++A   ++ L   T +     L E+   T F+GYD                  
Sbjct: 422 MSAQRKRSQAAHETIDL---TVQGSLDKLAEQIHPTAFLGYDF----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
           P  + T      V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G      +
Sbjct: 462 PDSEAT------VEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV+K ++ IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL  
Sbjct: 516 IVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E+A
Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRVV       GV S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYP----GV-SMELCGGTHVTNTAEIGLFKIVSETGIAAG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ GQ    +L  +D  +K L+  LK     +  R   +  E +  + QL   K 
Sbjct: 690 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +   D    +  ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S  K
Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVSDGK 809

Query: 835 ---KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               A+   VV +D   +  A       AK L GGGGGGRP++AQ+GG + +K  +A++ 
Sbjct: 810 VSLVAAFSPVVIKD--KKLQAGKFIGAIAK-LCGGGGGGRPNLAQAGGRDPSKLPEALST 866

Query: 892 VASFL 896
             S L
Sbjct: 867 AKSQL 871


>gi|260102891|ref|ZP_05753128.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083304|gb|EEW67424.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 879

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 346/929 (37%), Positives = 519/929 (55%), Gaps = 92/929 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L +
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 123 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG LP
Sbjct: 237 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE  ++
Sbjct: 297 SNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIENVIQ 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF   LD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     GL
Sbjct: 357 NEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F+  ++ Q+ RAR     L S G  +    ++K+K              S F 
Sbjct: 417 K-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SVFE 461

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ+ 
Sbjct: 462 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 508

Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585
           D G     DG +  ++TDVQ       +H   +   IL  E     VL ID + R  L  
Sbjct: 509 DHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I
Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K ++  N++ +++ + 
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810
            +    Q        Q+N               DL+    +ADVN M+         +L+
Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + D  +   +S +++L     + KA+++I + +  LD+   A DL + +A +  GGGGG
Sbjct: 792 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIF-GGGGG 849

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP+MAQ+GG      + AI  V   + K
Sbjct: 850 GRPNMAQAGGKRPEGLNDAIKAVIEEISK 878


>gi|183220780|ref|YP_001838776.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910880|ref|YP_001962435.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|205830131|sp|B0SGD3|SYA_LEPBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830132|sp|B0SPT4|SYA_LEPBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167775556|gb|ABZ93857.1| Alanine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779202|gb|ABZ97500.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase; AlaRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 919

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 343/959 (35%), Positives = 504/959 (52%), Gaps = 108/959 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              V  I   +  +FQ  GH ++PSSSLIP  DPTL+FT +GMV FK +FTG  +  Y  
Sbjct: 3   FKTVQEIARLYTNYFQDKGHTIVPSSSLIPKGDPTLLFTTAGMVQFKPLFTGAVELPYTR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             +VQKCVR      DL+ VG+T RH TFFEMLGNFSFG YFK+ AI+ A D      ++
Sbjct: 63  AASVQKCVRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKKEAIEYALDFSLNHLEI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179
            + ++++T+Y +D+EA K W  + G+  ++I+R+   DNFW  A ++G CGPCSE++ D+
Sbjct: 119 PKDKIWVTIYLDDDEAKKFWMDL-GIPEERIVRLGKKDNFWGPAGDSGACGPCSELYLDR 177

Query: 180 GE------C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           G       C   P   PG   + +RY+E WNLVF QF Q    E   L +  IDTG GLE
Sbjct: 178 GPEKGGPTCGNNPNCKPGC--DCDRYLEYWNLVFNQFNQTVSGELLPLKQTGIDTGSGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A +LQE  + YD D  K +I+  E ++G KY+     + RVI DH RS  F + DGI 
Sbjct: 236 RVAMLLQEVDSVYDTDELKSIIKQIEILSGYKYDETTKQSFRVITDHSRSVFFSLGDGIY 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P   GRGYV+RR++RRA  +AR LG  EP +  L+  L       YPEL      IE  L
Sbjct: 296 PDRTGRGYVIRRLIRRASLFARKLGIHEPFLYKLVSTLKDLYSLRYPELKDKAKDIESIL 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F  TL+ GL  L+ VL HL K++  ++ G   F+LY T+G P ++ ++++  RG
Sbjct: 356 KKEEELFLHTLEVGLEELETVLEHLKKEKQTVVTGKEGFRLYSTYGFPREMTKELVEERG 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW----FSLKEKYGATQFIGYDLLRG 465
            +  D   F + LE+ R  +RA   G      +KI     FS   +   T+F+GY     
Sbjct: 416 FS-FDDKGFEEELEKDRYLSRASWKG------KKIQYLTGFSASPEL-KTEFLGY----- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                              T   S ++   V  G+ V     G++  +V D+TPFYAE G
Sbjct: 463 -----------------TETKAKSRVLHLFV-DGKSVTSTKQGEEAVIVLDKTPFYAEGG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG    +G + Q+ D QK+ +  F+H  ++ +G L     +   I+ + R+ L+ 
Sbjct: 505 GQIGDTGYLKKEGFQFQVQDTQKEND-TFLHMGMILKGNLSVGDVVDSEIEVERRQNLAN 563

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HS THLL+ AL  ILGSHV+Q GS ++ D LRFD +H K ++  E+  IE +VN+ ++ 
Sbjct: 564 HHSGTHLLNGALRRILGSHVTQKGSIVSADYLRFDFSHPKALSKEEIIQIETDVNEAVSA 623

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+PV T ++    A  SGA ++   KY   VRV+S+     G  S   CGGTHVS+T EI
Sbjct: 624 NIPVKTEVLEIGQAKESGALSMFDEKYGSVVRVISM-----GDKSKEFCGGTHVSNTKEI 678

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----- 760
               IV E S  AG RRIEAI G+   ++ + Q + L S      +S     G +     
Sbjct: 679 GFFAIVKEGSPGAGNRRIEAICGESVVNYFLHQFQTLASKIETHNLSAKETFGDLKEFGI 738

Query: 761 ------------------EEIWEEYRKLQ-------------LIHAKRK-----LQLNVE 784
                             +E+    RKL+             L  AK+K      Q+N E
Sbjct: 739 TKEVPSPEILQTMFHQDGKEVVTRLRKLREELEIELEEKSSALFKAKKKREQKEFQMNPE 798

Query: 785 DL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +       H       ++ +   VD+K LK + D+L+ K +  I+ L G ++ + ++++
Sbjct: 799 LVDGLLQKAHHFPKGKVVTEVFPSVDAKSLKDLADSLKAK-EPEILCLFGTTEGESSTLV 857

Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  + L +R  +  D+ + +  V+  G GGGRP MAQ GG       +++    S  K
Sbjct: 858 FMCNKVLNERGIHCGDILKETL-VMLDGKGGGRPDMAQGGGKKPESVAKSLEFALSLAK 915


>gi|148989504|ref|ZP_01820863.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|149007347|ref|ZP_01831005.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147761151|gb|EDK68119.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147925047|gb|EDK76128.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|332074706|gb|EGI85180.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 872

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/925 (37%), Positives = 506/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|325846721|ref|ZP_08169636.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481479|gb|EGC84520.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 870

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 323/908 (35%), Positives = 518/908 (57%), Gaps = 58/908 (6%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT+  ++D+
Sbjct: 66  SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAFEFLTENLEIDK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
             L+++VY++D+EA+K+W +  GLS D+I+R    DNFW + E GPCGP SEIF D+G  
Sbjct: 122 DLLWVSVYEKDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVE 180

Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + I      PG +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ
Sbjct: 181 KAIDENDNKPG-NDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K N ++ID+ +++I+  E+++  KY+ N  + ++ RVI DH ++ +F+++DGI P+NE 
Sbjct: 240 NKDNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     +  ++  +       Y EL+  K  I   ++ E+ 
Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSVIEYVIDSYKDEYDELVDRKDKIISVIKKEEA 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  T+D GL +L+  +  L ++  + L+G+ AFKLYDT+G PLD+ ++IL    L  +D
Sbjct: 360 NFQNTIDSGLDILNEYIKDLRENNKDTLDGEDAFKLYDTYGFPLDLTKEILTENNLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ +E QR+ AR         + + I     +++  T+F+GYD L           
Sbjct: 419 TKEFDKQMENQRNLARNARKSDAGWSLDSINI---DEFDKTEFVGYDDLE---------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        V + +  +    E V     G K  V+ D+T FYAE GGQ+ DTG  
Sbjct: 466 -------------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I    + ++ +VQKK E I +H+  V  G L    +  + +D + R  ++ NH+ATHLL 
Sbjct: 513 ITGSAKAKVYNVQKKNE-IIIHYVEVIDGDLNLAKADFI-VDKERRLDITRNHTATHLLD 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  IL   V Q GS +  + LRFD T+   ++  E++ IE+ +N+ I Q L V   IM
Sbjct: 571 QALRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIEKIENEINEKIRQQLKVKKEIM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             +++   GA  L   KY D VRVVS++      +S  LCGG HV+++ E+++  I+ ES
Sbjct: 631 PYKESEKLGAIGLFEDKYKDMVRVVSID-----DYSIELCGGCHVNNSSEVLMFKILQES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  +GIRRIEAITG++   +L      +  ++  LK +  N++ + E + EE + L+   
Sbjct: 686 SAASGIRRIEAITGRKVYEYLNSNLGLINVVSKALKTNPKNILLKAESLNEEIKNLKSDI 745

Query: 775 AKRKLQLNVEDLSC---HKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            K K + N +D+     +++ D N    + H     D   L++  + +++K +  I++  
Sbjct: 746 QKLK-EFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++ + K      V++ L +R+NA  + +  +K+  GG GGG+ + AQ+GG + +K D+A
Sbjct: 805 TVNND-KIVFTASVSDSLTNRYNAGKIVKEVSKIT-GGNGGGKKNFAQAGGKDISKLDEA 862

Query: 889 IAGVASFL 896
           +  V   +
Sbjct: 863 LKKVYELI 870


>gi|323341643|ref|ZP_08081876.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464068|gb|EFY09261.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 869

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 339/913 (37%), Positives = 521/913 (57%), Gaps = 88/913 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IRT FL++F+   H + P + L+P +D TL++ NSG+   K  F G+ KP    +  V
Sbjct: 7   SEIRTMFLDYFKAQDHMIEPGAPLVPIDDDTLLWINSGVAALKKYFDGRVKPKKPRIANV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TKEFDLDQ 122
           QK +R     ND+DNVG+T RHHTFFEMLGNFS G YFKE AI  A++ L  ++  DLD 
Sbjct: 67  QKSLRT----NDIDNVGKTARHHTFFEMLGNFSIGDYFKEEAIGFAYEFLFSSEWLDLDV 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            + Y +V+ +D+EAF +W     +S  +I+R  T+DNFW + + GPCGP SEIF+D+GE 
Sbjct: 123 NKAYFSVHTDDQEAFDIWVNKYNVSPSRILR--TDDNFWQIGD-GPCGPNSEIFYDRGEK 179

Query: 183 -----IPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFILPKMSIDTGMGLERMA 234
                I   L     E +RY+E+WN+VF QF   E  +      LP+ +IDTGMG ER+ 
Sbjct: 180 YDPEHIGERLFFEDLENDRYVEVWNIVFSQFDGVEGGDIHTFKELPQKNIDTGMGFERLV 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +++Q+   N+D DLF  +IQA E +T MKY+ +N++ +RVI DH+RS  F +ADG + +N
Sbjct: 240 SIVQDGDTNFDTDLFIPIIQAIEALTPMKYQ-DNVMAYRVISDHIRSLVFTLADGAVFSN 298

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ + ++L      +  L+  +   MG +YP L + + +I + + SE
Sbjct: 299 EGRGYVLRRILRRAVRFGKVLEIEGTFLHGLVDDVIAVMGDSYPNLAEHRDMIVKLILSE 358

Query: 355 DERFGKTLDRG-LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +ERF KTL  G  +LLD + ++  ++ ++ GDVAFKLYDT+G P+++ Q+I     +  +
Sbjct: 359 EERFAKTLAGGEKLLLDTIEAN--QEAVITGDVAFKLYDTYGFPIELTQEIAEEHHVT-V 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D+  F  +LEEQ+ RAR+    + S G+ ++   + KE    ++FI YD+          
Sbjct: 416 DLDGFKASLEEQKERARSSRQKVESMGSQQEDLLNFKEN---SEFI-YDVFE-------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE-------VVFDQTPFYAEAG 525
                                    QG +V   V G++V+       VVFD+T FYAE+G
Sbjct: 464 ------------------------TQGRVVGLFVDGKRVDSFTGKGHVVFDKTCFYAESG 499

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG    D  + ++ DV+K   G  +H   V+ G +       L ID + R  +  
Sbjct: 500 GQVADTGTIESDSAKGKVLDVKKANGGQPLHFVDVD-GTITMGQVFDLKIDAKRRILIRK 558

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS  HLLH AL +++G HVSQ GS +  +  RFD +H + +T  +L+ +E  +N  IA+
Sbjct: 559 NHSCVHLLHSALKSVVGDHVSQAGSYVDDNYFRFDFSHFEKVTDEQLEKVELMINQWIAE 618

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LP+       E+A A GA AL    Y   VRVV++     G  S  LCGGTH   TGEI
Sbjct: 619 SLPITVVEKPLEEAKAMGAMALFSENYGSVVRVVTM-----GDASMELCGGTHAHGTGEI 673

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIW 764
            +  +VSE S+ +G+RRI   T   A +     + ++ ++ + LK+S Q ++  ++EE+ 
Sbjct: 674 GVFKLVSEESVGSGVRRILGKTSFGAYTSYKETEFEVDAIRTQLKLSPQKSIKTKIEEME 733

Query: 765 EEYRKLQLIHAKRKLQ----LNVEDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQK 818
            E   ++L+  K KL     L  +     ++A+V  N +S +  ++D +E+ +V+  L +
Sbjct: 734 AE---MKLLEGKYKLMMADVLKAKTQEYIQMAEVVGNDLSFVWIDMDDQEM-NVVKELVE 789

Query: 819 KIQSGIIMLVGISKEKKASVLIVV---TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I+   + +V ++  K +SV  VV    + +     A DLA+  A V  GG GGG+P+ A
Sbjct: 790 RIRDH-VDIVFVANHKASSVNFVVGCSDKAIKAGVKAGDLAK-EAAVTTGGNGGGKPNFA 847

Query: 876 QSGGPNGNKADQA 888
           Q+GG +  K + A
Sbjct: 848 QAGGKDITKIEDA 860


>gi|163754032|ref|ZP_02161155.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1]
 gi|161326246|gb|EDP97572.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1]
          Length = 870

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 340/916 (37%), Positives = 503/916 (54%), Gaps = 74/916 (8%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FLEFF+   H+++PS+ ++  NDPTLMF NSGM PFK  F G   P    +   Q
Sbjct: 5   DIRAKFLEFFKSKTHQIVPSAPMVTKNDPTLMFVNSGMAPFKEYFLGNGTPKSNRIADTQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+  L
Sbjct: 65  KCLRVSGKHNDLEEVGYDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYGIDKDIL 124

Query: 126 YITVY---DE-----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+TV+   DE     D+EA+ LWK+I  +  ++I+     DNFW M E GPCGPCSEI  
Sbjct: 125 YVTVFEGSDEDGLKLDQEAYDLWKEI--VPEERILMGNKADNFWEMGEQGPCGPCSEIHV 182

Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D + E     +PG+   + +  + +EIWNLVFMQ+ ++  +    LP   +DTGMG ER+
Sbjct: 183 DIRSEEEKAKIPGADLVNMDHPQVVEIWNLVFMQYNRKADKSLEKLPAQHVDTGMGFERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGIL 291
             VLQ+  +NYD D+F  LI+  E +T +KY  N  V+   RVI DH+R+ SF IADG L
Sbjct: 243 CMVLQDVKSNYDTDVFTPLIREIETITNVKYGTNEKVDVAIRVIADHVRAVSFSIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N  RGYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL + K LI+  
Sbjct: 303 PSNNTRGYVIRRILRRAVRYGFTFLNKKEPFIYRLVDVLDNKMGKAFPELKEQKQLIQNV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E++ F +TLD+GLVLLD V+ ++   ++++G   F+L DT+G P D+ + IL  RGL
Sbjct: 363 IKEEEQSFLRTLDQGLVLLDRVIENVN-GKVVSGKKVFELKDTYGFPEDLTELILRERGL 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              +   F+ AL+ Q+   R       +      W  L E     +F+GYDLL     + 
Sbjct: 422 T-YNEEEFDAALKIQQEGGRK-----ATAIQADDWVVLLED-EEEEFVGYDLLEVDVRLT 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
             RK+  +K                            G + ++VF+ TPFY E GGQ+GD
Sbjct: 475 RYRKIETKK---------------------------EGVQYQLVFNMTPFYPEGGGQVGD 507

Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G     +G  + + D  KK   + +H  I +    +    L   +D + R + + NH+A
Sbjct: 508 KGYVETSNGDVIYVLDT-KKENNLIIH--ITKNLPKKLNEPLRAVVDKKQRERTAANHTA 564

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I   LP+
Sbjct: 565 THLLHQALREILGTHVEQKGSAVHSKYLRFDFSHFSKLTVEELRDVENFVNSRIEGKLPL 624

Query: 650 VTRIMNR--EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
             +  NR  E+A+A GA AL G KY D VR +          S  LCGGTHV +T +I  
Sbjct: 625 EEK-RNRPVEEALADGALALFGEKYGDTVRSIRFG------KSIELCGGTHVQNTADIWH 677

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I SE ++ AGIRRIEAIT    +      +     +   L  +  + V  V ++ +E 
Sbjct: 678 FKIKSEGAVAAGIRRIEAITYDATKEFYFENNRAYYEIKDVLN-NPKDAVKAVTDLKDEN 736

Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSG 823
            KL  Q+ +  +    N++    +++ D+N +  +  +VD  +  +K++   L  +I++ 
Sbjct: 737 AKLRKQIENLLKDKAKNLKGELKNELKDINGVQFLAKQVDLDQNGIKNLAFELGGEIKN- 795

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + +    + E K  +   ++++L+    F+A  + R   K++  GGGGG+P  A +GG N
Sbjct: 796 LFLFFATATENKVMLTCYISKELVSERGFDAGKVVRELGKLI-HGGGGGQPFFATAGGKN 854

Query: 882 GNKADQAIAGVASFLK 897
                +AI  V  ++K
Sbjct: 855 PGGIPKAIERVKEYVK 870


>gi|322387551|ref|ZP_08061160.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321141418|gb|EFX36914.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 872

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 341/925 (36%), Positives = 502/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D +++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDTDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFLPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAV+     ++F +TP
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVTEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       LTID 
Sbjct: 499 FYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLTIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEAIAVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A++G+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVSGKEAFEAYREQEDALKAVAATLKAPQLKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + + N   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+D+    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDVLVLVAAIGDKVNLLVASKTKDI----HAGNLVKELAPIV-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|323140610|ref|ZP_08075534.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322414874|gb|EFY05669.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 873

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 347/914 (37%), Positives = 512/914 (56%), Gaps = 68/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FFQ  GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP    +TT 
Sbjct: 7   NEIREKFLKFFQDRGHLMLPSASLIPQDDPTLLIIGAGMAPFKPFFTGKMKPPATRITTC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR G    D++NVGRT RHHT+FEMLGNFSFG YFK+  I  +W+ LTKE  L   +
Sbjct: 67  QKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWSWEFLTKELGLPGDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYIT++ ED+EAF +W  + G+  D I+R+   DN+W +  +GPCGP SEI  D G    
Sbjct: 123 LYITIHTEDDEAFDIWHNVVGVPEDHIVRLA--DNWWEIG-SGPCGPDSEIHIDLGPERG 179

Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  G   + +R++EIWNLVF QF Q        L   +IDTG GLER+A+V+Q K +
Sbjct: 180 CGKPTCGPGCDCDRFLEIWNLVFTQFNQMPDGTYPPLKNKNIDTGAGLERLASVVQGKPS 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+ + ++  ++Y  +    V+ +VI DH+RS +F+I DGILP+NEGRGYV
Sbjct: 240 NFETDLIFPIIEYAAKIANVEYGKDKATDVSLKVIADHVRSMTFMIGDGILPSNEGRGYV 299

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +ARLLG  E  +   +  +    G AYP L++    I++ +  E+  F +
Sbjct: 300 LRRILRRAIRHARLLGINEMFLTGAVDVVIGMFGHAYPNLVEKADFIKKVVEMEETSFLR 359

Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL +G  LL+  +  L  +   +L+G  AFKL DT G P ++ ++IL   G+  +D   F
Sbjct: 360 TLKQGCELLNEEIEKLKAENKTVLDGATAFKLNDTFGFPWELTEEILEEAGMT-MDKEGF 418

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + ALE QR  AR           +K                     G   +     +   
Sbjct: 419 DAALEVQRKMAR-------EARNDK--------------------EGRPVVYNTSGINVA 451

Query: 479 KPPIDLTNGVSSIVKAI-VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  +D     + IVK       + +E A  G  V V+ D T F+AE GGQLGD G     
Sbjct: 452 ELKVDEAATEAKIVKMYPAHDAQPIENAADGTDVAVICDVTAFHAEGGGQLGDIGTITAS 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              + +   +K  +G  +    V  G +    ++   +D   +  ++ NH+ATHLLH AL
Sbjct: 512 TGVIAVNVTKKLPDGAVIMIGSVTEGTVAVGDAVTFAVDKARKMDIARNHTATHLLHAAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV+Q GS + PD LRFD +H   +T+ ELK +E  VN+ +     V    +  E
Sbjct: 572 KQVLGAHVNQAGSYVGPDRLRFDFSHFSQVTAEELKEVEAIVNEQVLAGKAVNIEELPIE 631

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV+V        S   CGG+HVS+T +I +  IVSE S  
Sbjct: 632 EAKKKGATALFGEKYGNIVRVVTVPD-----FSMEFCGGSHVSNTAQIGMFKIVSEGSSG 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----L 772
           AG+RRIEA+TG  A +H+   +E +  LA+ LK    +V  R+E +  E +  Q     L
Sbjct: 687 AGVRRIEAVTGHGAVAHVNATEEMVNGLAAELKCRCCDVPTRLEALQCELKAAQKKAEEL 746

Query: 773 IHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828
                K+Q+ NV D    +I D N +  ++ +V++     L+++ D ++ K+   +++  
Sbjct: 747 AAEIAKVQVSNVAD----QIKDANGVPVLVQKVNADSVDALRNLGDQMRDKVGGVVVLAA 802

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            +   +K S+L + T+D + +  +A ++ +  AK L GGGGGGRP MAQ+G  +  K D+
Sbjct: 803 VMG--EKVSILTMATKDAVAKGVHAGNIVKAVAK-LCGGGGGGRPDMAQAGAKDVAKVDE 859

Query: 888 AIAG----VASFLK 897
           A+A     VA+ +K
Sbjct: 860 ALAAAFDIVAAMVK 873


>gi|149277763|ref|ZP_01883903.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149231451|gb|EDM36830.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 900

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 340/951 (35%), Positives = 517/951 (54%), Gaps = 122/951 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF+   H ++PS+ ++  NDPTLMFTN+GM  FK++F G+    Y  +T  Q+
Sbjct: 6   IRQAYLKFFESKQHHIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAAIKYPRITDTQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + + + +LY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYRIPKDKLY 125

Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +++++         DEEA++LWK+   +  ++II     DNFW M +TGPCGPCSEI  D
Sbjct: 126 VSIFEGDEKEGLPRDEEAYELWKQF--VPEERIILGNKKDNFWEMGDTGPCGPCSEIHVD 183

Query: 179 QGECIP-------GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
              C P        G    + +  + IEIWN VFMQF +        LP   +DTGMG E
Sbjct: 184 ---CRPDDERATVAGKSLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAQHVDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+  VLQEK +NYD D+F+ LIQ      G+ Y  +   +   RV+ DH+R+ SF+IADG
Sbjct: 241 RLVRVLQEKPSNYDTDVFQPLIQFIASHAGVVYGADEKTDIAMRVMADHIRAISFVIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N   GYV+RRI+RRA+ YA   L   EP +  L+P L  +    + EL+  K  ++
Sbjct: 301 QLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLNQLVPVLADQFSGVFDELVLQKDFVQ 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDG-------------------------VLSHLGKDEILN 383
           + +  E+  F +TL  G+   +                          V S L    +++
Sbjct: 361 KVVMEEEVSFLRTLATGIQRFENYTKKQADFLMSENAIDTEKPFEHPWVYSILKDQMVIS 420

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAG-IDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           GD AF+L DT+G P+D+ +  L AR     ID+  +N AL +Q+ R+RA +  + +G   
Sbjct: 421 GDFAFELNDTYGFPIDLTE--LMAREKNWVIDMKEYNTALLKQKERSRA-ATAIDTGD-- 475

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
             W  +      ++F+GYD       + + RKV                           
Sbjct: 476 --WIVVHGDLD-SEFVGYDDFETETQVIKYRKV--------------------------- 505

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL---QITDVQKKAEGIFVHHAI 559
             A   ++ ++V  +TPFYAE+GGQ+GDTG  + D  RL   ++TD  KK  G+ VH+  
Sbjct: 506 -NAKGREQYQIVLSKTPFYAESGGQVGDTG-RLEDHSRLFSVEVTDT-KKENGVIVHYTD 562

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L  + +    ID   R     NH+ATHLLH AL  +LG+HV+Q GS + P+ LRF
Sbjct: 563 TLPEDL--DGTFWAVIDEDKRLLSQDNHTATHLLHAALKKVLGTHVNQKGSLVNPEYLRF 620

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRV 678
           D +H   I+  +L +IE  VN  + +N+P+   R +  + AI+SG  AL G KY + VRV
Sbjct: 621 DFSHFAKISEEDLAAIEHLVNQKVRENIPLKEQRDVPYDQAISSGVTALFGEKYGELVRV 680

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           ++  ++D   +S  LCGGTHV +TG+I    I+SES++ AG+RRIEAIT  +A + ++ Q
Sbjct: 681 IT--FDDH--YSKELCGGTHVQATGQIGYFKIISESAVAAGVRRIEAITADKAEAFILDQ 736

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI---ADVN 795
           + +L  L + LK ++ ++   V  + EE  +L+   A++ +     DL    I    DVN
Sbjct: 737 NRELNELKALLKGNK-DLKAAVSGLLEENARLKK-EAEKAMLAQSADLKNEVIKLAKDVN 794

Query: 796 FMSHIISEVDSKELKSVMDALQ------KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            M+ I + V    + + MDA++      K + S + ++     + K  + +++TE+L+  
Sbjct: 795 GMNFIATHV----VLNSMDAVKNLAFEVKDLVSNLFLVFTTLIDDKPGITVMLTENLVKE 850

Query: 850 --FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              NA ++ R  AK +  GGGGG+P  A +GG N +       G+A  L+K
Sbjct: 851 RGLNASNIVRELAKEI-QGGGGGQPFYATAGGKNKD-------GLAVVLQK 893


>gi|290580864|ref|YP_003485256.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254997763|dbj|BAH88364.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 872

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 342/916 (37%), Positives = 513/916 (56%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+F++   H + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FDL +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPEWFDLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181
            +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIE-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 182 ----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNM-SFKVIADHIRSLSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  EP +  L+P +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKIVK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+E F +T+D G  +LD +L+ L     + L G   F+LYDT+G P+++ +++    G 
Sbjct: 358 REEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELAEDAGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F  A++EQ+ RARA+ +  GS G   +   ++ EK              S F 
Sbjct: 418 K-IDHQGFQAAMKEQQERARANVVKGGSMGMQNETLSNITEK--------------STFN 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            E                + S +  I+   E + EAVS  +V +VF +TPFYAE GGQ+ 
Sbjct: 463 YE-------------KEALDSSLSVIIADNERI-EAVSEGQVLLVFSETPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++TDVQK   G  +H   V  G L    +  L ID++ R ++  NH
Sbjct: 509 DHGLIKNDKGDTVARVTDVQKAPNGQALHTVDV-LGSLSVGTTYHLEIDHERRNRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I + +
Sbjct: 568 TATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIWKAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL G KY   VRVVS+     G +S  LCGGTH+ +T EI +
Sbjct: 628 PVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK +A+ LK  Q N V  +V  + ++
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIAATLKAPQMNQVANKVASLQDQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +A+ K +            + +VN + +I S+V   D+  L++  D  ++K  
Sbjct: 743 LHKLQKENAELKEKAAAATAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADQWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++LV  +  KK +VL+   ++D+    +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 803 SDVLVLV-TNIGKKVNVLVASKSKDI----HAGNLIKTLAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           + +     IA VA  L
Sbjct: 857 DASAIKDLIAAVAENL 872


>gi|225017450|ref|ZP_03706642.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum
           DSM 5476]
 gi|224949860|gb|EEG31069.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum
           DSM 5476]
          Length = 879

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 300/737 (40%), Positives = 445/737 (60%), Gaps = 48/737 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  FL FF+  GH  L S  LIP  D +L+  NSGM P K  F GQE P  + V
Sbjct: 4   TGLNELREKFLSFFESKGHTRLKSYPLIPQGDNSLLLINSGMAPMKKFFLGQEVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  A + AW+ +TKE +L 
Sbjct: 64  TTCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATEWAWEFVTKELELP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+++++Y +D+EAF++W K  G+    I+R+   DNFW +  +GPCGPCSE++FD+GE
Sbjct: 120 IDRIWVSIYQDDDEAFEIWTKERGVDPSHIVRMGKEDNFWEIG-SGPCGPCSELYFDRGE 178

Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +R++E WNLVF QF    +     +   +IDTGMGLER+A ++QE
Sbjct: 179 DKGCGSPDCRVGCECDRFVEFWNLVFSQFNGDGEGHYEPMEHPNIDTGMGLERLACIMQE 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  ++++    ++ G+KY+ +  V+   RVI DH+RS++F+I DG++P+NEGR
Sbjct: 239 VDNLFEVDTVQNIMNHISEIAGVKYKQDPKVDVCLRVITDHIRSTTFMIGDGVIPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA    + LG  +P +  ++  +  E  SAYPEL +    I++ +R+E+E 
Sbjct: 299 GYVLRRLLRRAARNGKQLGIRDPFLYKVVDTVIAENKSAYPELEENADYIKKIVRAEEEN 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F KT+D+G+ LL+ ++  +  +   +IL+G+ AFKLYDT+G P+D++++I+  +G+  +D
Sbjct: 359 FAKTIDKGMELLNNIIDSIDSNIESKILSGEQAFKLYDTYGFPIDLIKEIISEQGI-DVD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F + + EQ++RAR   L   + G + + +    E    T+F+GY+            
Sbjct: 418 EARFRELMNEQKTRAREAKLNSDTVGWSSENYHITDE---PTEFVGYETYE--------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
              C           + ++  + + GE  EEA  G +V +VFD+TPFYAE+GGQ+GD G 
Sbjct: 466 ---CD----------AKLLHILTEDGE-AEEAKEGDRVNLVFDRTPFYAESGGQVGDRGV 511

Query: 534 -AIGDGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
             IG+ + + I D QK   G   +H  +V  G ++  ++  L+ID   R   + NH+A H
Sbjct: 512 FVIGNSV-VNILDCQKDPSGQHSLHLGLVMAGSIQKGVTGHLSIDGLKRDATARNHTAAH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL   LGSHV Q G  +  + LRFD  H + +T  EL ++E  VN  I + + V T
Sbjct: 571 LLQKALRDELGSHVHQAGQLVDSERLRFDFNHFEAMTPQELLNVEQAVNAKILEAVKVTT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ E A A GA AL G KY D VRVV     D   +S  LCGGTHV +T ++ L  I+
Sbjct: 631 SEMDIESARAQGAMALFGEKYGDIVRVV-----DADGYSVELCGGTHVDNTSKLGLFKII 685

Query: 712 SESSIRAGIRRIEAITG 728
           SESS  AGIRRIEA TG
Sbjct: 686 SESSAAAGIRRIEATTG 702


>gi|255327164|ref|ZP_05368239.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295782|gb|EET75124.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 895

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 338/916 (36%), Positives = 508/916 (55%), Gaps = 65/916 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQK
Sbjct: 6   ISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT       F LD
Sbjct: 65  CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKGGFGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++T+Y+ D+EAF +W    G  A++I R+   +N+WS  + GP GP SEIF+D+G 
Sbjct: 121 PERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMAT 235
              G   G + + +RYIEIWNLVFMQ+++     K +  IL   PK +IDTG+G+ER+A 
Sbjct: 181 AY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGVERLAM 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286
           +LQ   N Y+ D  + ++ A+ +++G KY G+         + V  RV+ DH+RSS  LI
Sbjct: 240 LLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRSSLMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +      
Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVADDFER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F  T++ G   L+  ++   KD    ++G  AF L+DT+G P+D+  ++
Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPIDLTLEM 419

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G+  +D  +F + + EQR RA+A +               K K GA      DL  
Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADA---------------KAKKGAFA----DLSE 459

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
             K + E   +      +       + ++AI+  G  V  A +G K+EVV D+TPFYAEA
Sbjct: 460 LRKLVDERGSIFTGYTELR----TETKLRAILVDGVSVPAAKAGDKIEVVLDETPFYAEA 515

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G + T   +V  +D Q RR   
Sbjct: 516 GGQAADTGVITGNGFIIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQRRRDGE 575

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  N  I 
Sbjct: 576 KAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWGEGLSESAKREVEEVANLAIR 635

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N  V+TR M   +A A GA +L G KY D VRVV +    GG  S  LCGGTHV S+ E
Sbjct: 636 DNHEVITREMPIAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHVGSSAE 691

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I  L +++ESS+ +G RR+EA+ G  + +HL  +   +  L   +KV S  ++  ++ + 
Sbjct: 692 IGSLSLLTESSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPEKINQT 751

Query: 764 WEEYR--KLQLIHAKR-KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + +  + +L   +R KLQ     L  +   I  V  ++H   E+D+  ++ +   L+ 
Sbjct: 752 LAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLALDLRS 811

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  S   ++  +       V++V T +        A  L R++A VL GGGGGG+  +AQ
Sbjct: 812 RFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVL-GGGGGGKDDVAQ 870

Query: 877 SGGPNGNKADQAIAGV 892
            GG + +K   A+  V
Sbjct: 871 GGGQDASKIGAALDAV 886


>gi|315221813|ref|ZP_07863725.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315189046|gb|EFU22749.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 872

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 342/925 (36%), Positives = 507/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D +++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWISV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPEHQGLRLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y  +G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKNYNPDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  +P +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINDPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G      ++  L      +++G   FKLYDT+G P+++ Q+I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAQSIVEELKAKGQSVISGTDVFKLYDTYGFPVELTQEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I         A     
Sbjct: 412 AEEAGMT-VDREGFETAMKEQQERARASVVKGGSMGMQNETLQNI--------TAESHFN 462

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y+                          +S+ + AIV   E VEE  +G K  +VF +TP
Sbjct: 463 YE-----------------------KEALSAKLVAIVAADEEVEEVSTG-KAYLVFSETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G       +L  Q+ DVQK   G  +H   V    L       L ID+
Sbjct: 499 FYAEMGGQVADHGHIFDSEGQLIAQVVDVQKAPNGQPLHTVEV-VAPLTLNQEYKLEIDH 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  +LG H +Q GS    + LRFD TH + +T+ EL+ IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + + + T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 EVNEKIWEAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ +T EI L  IV E  I +G RRI A+T + A      +++ LK++A+ LKV Q   V
Sbjct: 673 HMKNTSEIGLFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEDALKAIATTLKVPQMKEV 732

Query: 758 GR-VEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKS 811
            R VE + E+ R+LQ  +A+ K +           + H++   +F++  +S  D+  L++
Sbjct: 733 SRKVEALQEQLRQLQKENAELKEKAAAAASGEIFKNVHEVNGCSFIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    EK   ++   T+D+    +A +L +  A ++  G GGG+
Sbjct: 793 FADTWKQKDYSDVLVLVAAISEKVNVLVASKTKDI----HAGNLIKELAPIV-NGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N     + +A V   L
Sbjct: 848 PDMAMAGGSNQAAIQELLAAVPEKL 872


>gi|295101950|emb|CBK99495.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 886

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 340/913 (37%), Positives = 510/913 (55%), Gaps = 49/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELRDKYLTFFEGKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFK+  I  AW+ LT +    
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKKEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + RL+I+VY ED+EA+ +W K  G++ D ++R+   DNFW    +GPCGPCSEI+FD+
Sbjct: 120 IPKDRLHISVYKEDDEAYDIWTKKVGVAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E + G  Y  +    ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QGVGNLFEVDTVQSVLHHVEHIAGKTYGADPKEDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG + P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K  + +L G   FKL DT G PLD+ ++I   +G+  I
Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F+  + +Q+ RARA  L    SG +E ++ +L  +   T+F+GYD L      K D
Sbjct: 418 DEEGFHAEMTKQKERARAERLKKNISGWSEDLFGTLTAE--PTEFVGYDTL------KSD 469

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             V+       LT+ +++            E+A  G  V VV D+TPFYAE GGQ  D G
Sbjct: 470 SVVVALSDEETLTDAIATD-----------EQAKEG--VLVVLDKTPFYAEMGGQAADHG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G    L++ DV+K  +G +VH   +E GI+     L   +D + R  ++ NH+ATHL
Sbjct: 517 VITGAECVLRVQDVKKTPKGYYVHTCTLESGIVHVGDHLTARVDKEYRMAIARNHTATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS        FD TH   +T  EL  ++  VND I +++ V  +
Sbjct: 577 LQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELVRVQKIVNDKIFESMNVTVK 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I    IVS
Sbjct: 637 EMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIVS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL- 770
           ESS+ AGIRRIEA+TG+        Q+  L ++A+ LK +    +  R E +  E + + 
Sbjct: 692 ESSVAAGIRRIEAVTGRNLLIRANMQEAMLHAVANTLKANNVAALPARAEAVMAENKAMS 751

Query: 771 -QLIHAKRKLQLN-VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L   K K+  + V  L  +   + DV   S   +      L+ + D ++   ++  + 
Sbjct: 752 KELEDIKAKVAASKVTSLFDNAETVGDVKIASAYFTGTSGDTLRGMCDTIRDNAKAAAVA 811

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++    + K ++ + VT+D   +   A +L +     + GG GGG+P  A +G  +  K 
Sbjct: 812 VLVGKSDDKITMAVTVTKDAQAKGLKAGNLVK-EISAIAGGKGGGKPDFAMAGLKDETKI 870

Query: 886 DQAIAGVASFLKK 898
           D+A+A V   ++K
Sbjct: 871 DEALAAVKGIVEK 883


>gi|15903283|ref|NP_358833.1| alanyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515613|ref|YP_816683.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|32171540|sp|Q8DPC7|SYA_STRR6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122278431|sp|Q04JW5|SYA_STRP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15458878|gb|AAL00044.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076189|gb|ABJ53909.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 872

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/925 (37%), Positives = 504/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y  +Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +   I   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVDNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQPKIQELLDAVAGKL 872


>gi|223937386|ref|ZP_03629291.1| alanyl-tRNA synthetase [bacterium Ellin514]
 gi|223893937|gb|EEF60393.1| alanyl-tRNA synthetase [bacterium Ellin514]
          Length = 908

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 341/949 (35%), Positives = 507/949 (53%), Gaps = 115/949 (12%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ----A 60
           S IR +FL+FF+   H ++PSSSL+P + P L+FTN+GM  F  IF GQ+K        A
Sbjct: 4   SQIRQSFLDFFKSKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGQKKADVSKWAGA 62

Query: 61  VTTV-------QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           V ++       QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI  AW+L
Sbjct: 63  VPSLDTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKEAIDWAWEL 122

Query: 114 LTKEFDLDQRRLYITVY----------DEDEEAFKLWK-KISGLSADKIIRITT---NDN 159
           +T+ +   + RLY TVY          D D+EA+ LW  K S    D  + I      DN
Sbjct: 123 VTEVWRFPKERLYATVYSPDKSLGDPSDFDQEAYDLWAAKFSAAGLDPKVHIVNGNKKDN 182

Query: 160 FWSMAETGPCGPCSEIFFD---QGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQ 214
           FW M +TGPCGPCSE+  D   QG+   G L   G++E     IEIWNLVF+QF      
Sbjct: 183 FWMMGDTGPCGPCSELHVDLTPQGDT-KGALVNKGTAE----CIEIWNLVFIQFNANPGG 237

Query: 215 ERFILPKMSIDTGMGLERMATVLQ----------EKTNNYDIDLFKHLIQASEQVTGMKY 264
               LP   +DTGMG ER+ +++Q           K +NY+ D+F+ +  A E+++G +Y
Sbjct: 238 TFSPLPAKHVDTGMGFERVTSIMQGSHGFKDFANAKISNYETDIFRPIFDAIEKLSGKRY 297

Query: 265 EGNNI---------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
            G+ +               V  RVI DH+R+ SF IADGI P N  R YVLRRI+RRA+
Sbjct: 298 -GSTLPKSGSTGDTEQEKVDVAFRVIADHIRTLSFSIADGIQPGNTDRNYVLRRILRRAV 356

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            Y R LG+ EP    L+  L   MG  +PE+ + K  +++ +RSE+E F KTLDRG+ L 
Sbjct: 357 KYGRTLGFHEPFFYKLVDVLAETMGQVFPEIRERKQHVKDVIRSEEEAFNKTLDRGIELF 416

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           +  ++H+     L G  AFKLYDT+G PLD+ + +   RGLA +D+  FN  ++EQ+ R+
Sbjct: 417 NQEIAHVKPGHQLQGPFAFKLYDTYGFPLDLTELMARERGLA-VDVAGFNLLMDEQKKRS 475

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +A      +   E I  S  E    T+FIG+D L+                         
Sbjct: 476 QA------AQKKEVISLSQIETTVPTKFIGFDQLQA------------------------ 505

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                   + +++E      K  VV D +  YAE GGQ+GDTG     G   ++ + QK 
Sbjct: 506 --------KTKVLEVVGLKDKTAVVLDTSSAYAEMGGQVGDTGELSQGGKLWRVENTQKS 557

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
                  H + +    +T   + LT+D + R  +  +H+ TH+LH A+  ++    SQ G
Sbjct: 558 GNTWL--HFLADGDAPQTGSEVELTVDRERRNAIQRHHTVTHILHWAIHEVVSREASQKG 615

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALL 668
           S + PD L FD  +S+P+T  ++  +E  VN+ I +N  V  T +++ +           
Sbjct: 616 SFVGPDKLTFDF-NSQPLTPQQVADVEKLVNERILENAGVSWTEVLHADVKGRKDVMQFF 674

Query: 669 GTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           G KY DRVRVV +  + G +  +S  LCGGTH   TGEI L  I+ ES++ AG+RRIEA+
Sbjct: 675 GDKYGDRVRVVQIGGKAGELNGYSMELCGGTHTQGTGEIGLFRIIGESAVAAGVRRIEAV 734

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVE 784
            G  A      + + +KS+A  +    G +  +++ +  + ++L  QL    +K   N  
Sbjct: 735 AGLEAYGKATDEIQLIKSIAGKVNAPIGELEKKIDALLAQQKELERQLKAVNQKEAANTA 794

Query: 785 DLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                K A +N +  II  +   D   L+S+ DAL+ + + G+++L G +    A ++  
Sbjct: 795 KSLIGKAATLNGIPAIIENLGSADGDTLQSIADALKGQFK-GVVVLGGAANGAVA-LVAS 852

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           V+ +   +  A  + +  A ++ GG GGG+P  A+ GG + +K D+A+A
Sbjct: 853 VSPEFTAKVQAGKIIQGIAPIV-GGKGGGKPDNARGGGKDVSKLDEAMA 900


>gi|324999314|ref|ZP_08120426.1| alanyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 886

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 343/919 (37%), Positives = 497/919 (54%), Gaps = 75/919 (8%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           F   F++NGH  +PS+SLI   DP L+F N+GMV FK  F G     Y   T++QKCVR 
Sbjct: 10  FTAHFERNGHTPVPSASLI-LEDPQLLFVNAGMVQFKPYFLGDVPAPYPRATSIQKCVRT 68

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LDQRRL 125
                D+D VG+T RH TFF+M GNFSFG YFK  AI+ AW L+T   D      D  R+
Sbjct: 69  ----PDIDEVGKTTRHTTFFQMAGNFSFGDYFKRGAIEFAWSLITNSQDEGGYGFDPERI 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++TVY++D+EA  LWK I+GL   +I R   +DN+W M   GP GPCSEI++D+G    G
Sbjct: 125 WVTVYNDDDEAIALWKDIAGLPEQRIQRRGGDDNYWDMGVPGPGGPCSEIYYDRGPEF-G 183

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQER------FILPKMSIDTGMGLERMATVLQE 239
              G   + +RY+EIWNLVFMQ E+     +        LP  +IDTGMG+ER+A +LQE
Sbjct: 184 AEGGPEADEDRYLEIWNLVFMQDERGELSPKKGHPPIGTLPHKNIDTGMGVERVAFLLQE 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N Y+ DL + +I  +E+++G +Y  N  + V  RVI DH RSS  +I DG+ P NEGR
Sbjct: 244 VNNVYETDLVRPVIAKAEELSGRRYGRNEEDDVRFRVIADHARSSMMIIGDGVTPGNEGR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR +  ARLLG T P +      +   M   YPEL      I   +R+E++ 
Sbjct: 304 GYVLRRLLRRIVRSARLLGVTGPCLGEFAAVVRDTMSPTYPELATDFERISAVIRAEEDT 363

Query: 358 FGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F  TL  G  + +G ++     G+   L GD AF+L+DT+G P+D+  ++    GLA +D
Sbjct: 364 FRATLTAGEKIFEGAVAEARSTGR-TTLPGDQAFQLHDTYGFPIDLTLEMADEAGLA-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F   ++EQRSRA+A + G   G  +  ++ ++ + +GAT F+GY  L          
Sbjct: 422 RERFTALMDEQRSRAKADAAGRKVGFVDASVYRAVLDTHGATDFLGYQSL---------- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       N  S IV  +++ G+ V  A  G +VEV+ D+TPFYAEAGGQ  DTG 
Sbjct: 472 ------------NSESRIV-GLLRDGQTVPAAEQGDQVEVLLDRTPFYAEAGGQQADTGV 518

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G    +++ DVQ    G+ VH  +V  G +  +  +V  +D   R  +S  H+ATHL+
Sbjct: 519 LRGGSFEIRVDDVQSPVAGLRVHRGVVTAGTVTLDAEIVAEVDPARRSAISRAHTATHLV 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           H  +   LGS  +Q GS   P  LRFD T  +  +  A L  IE+ VN ++ Q+  + T 
Sbjct: 579 HAGVRGALGSSAAQAGSLNAPGRLRFDFTSPTGAVDPAALVEIEEEVNSVLQQDREIQTY 638

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + + A   GA  L G KY DRVRVV     D G +S  LCGGTHV  TGE+ L+ ++S
Sbjct: 639 ETSMDSARKLGAMMLFGEKYGDRVRVV-----DMGDYSRELCGGTHVRRTGELGLVRVLS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----------EE 762
           E+SI +G+RR+EA+ G  A  H   +   +  LA  LK     +  R+          E 
Sbjct: 694 EASIGSGVRRVEALVGLDAFQHATTEHLLVNQLAEQLKARPEELPDRIQGLVERLRTAER 753

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-- 820
             E++R   ++ +   L    EDL    +  V     +       +L+++   ++ K+  
Sbjct: 754 DLEKHRADAVLASAGSLADAAEDLDGTALVAVTAPDGVA----GNDLRTLAADVRGKLGD 809

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878
           + G++ L  ++ + K S ++  T+   D  N V   +L  +     GG GGG+P +AQ G
Sbjct: 810 RPGVVALFAVA-DGKVSFVVATTKAARD--NGVAAGKLIPEFAAAVGGRGGGKPDLAQGG 866

Query: 879 GPNGNKADQAIAGVASFLK 897
           G +    D AI  + S L+
Sbjct: 867 GTDPAGIDAAIQKLRSALR 885


>gi|182684342|ref|YP_001836089.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|205830229|sp|B2IQK0|SYA_STRPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|182629676|gb|ACB90624.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 872

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/925 (37%), Positives = 504/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y  +Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +   I   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|312277863|gb|ADQ62520.1| Alanyl-tRNA synthetase AlaS [Streptococcus thermophilus ND03]
          Length = 872

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 334/912 (36%), Positives = 508/912 (55%), Gaps = 72/912 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FDL +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGEE 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+A
Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I DG LP 
Sbjct: 239 AIMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ ++ 
Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  +LD +L++L   GKD +   D+ FKLYDT+G P+++ +++    G 
Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F  A++EQ+ RARA  +  GS              G       ++   S+F+ 
Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E                  S +  IV   +   ++V+  K  +VF+QTPFYAE GGQ+ D
Sbjct: 464 E-------------AETAESRLSVIVAD-DARHDSVNSGKALLVFEQTPFYAEMGGQVAD 509

Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G    A G  +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 510 HGTISDAAGTTV-ARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQ 821
              LQ  +A  K K            + + N + +I S+V+   +  L++  D  ++   
Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSAAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L    +EK   ++   +E++    +A +L ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIREKVNVLVASKSENV----HAGNLIKVLAPIV-SGRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVA 893
            N     ++ VA
Sbjct: 858 ANSIQDLLSAVA 869


>gi|158337563|ref|YP_001518738.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|205829961|sp|B0CFX4|SYA_ACAM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158307804|gb|ABW29421.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 873

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 336/898 (37%), Positives = 514/898 (57%), Gaps = 57/898 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR TFL+F+   GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ +      TT 
Sbjct: 8   AQIRQTFLDFYAAKGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQREAEVPRATTS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI  AW+L T+ + L   R
Sbjct: 67  QKCIRT----NDIENVGQTARHHTYFEMLGNFSFGDYFKEQAIAWAWELSTEVYKLPPER 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           +  +V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSE+++D     P
Sbjct: 123 IVPSVFEEDDEAFAIWRDKIGIPEHRIQRMGAEDNFWASGPTGPCGPCSELYYD---FYP 179

Query: 185 --GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFM++ + +  +   L   +IDTG+GLERMA +LQ   N
Sbjct: 180 EKGDDKIDLEDDTRFIEYYNLVFMEYNRDSDGKLAPLKNKNIDTGLGLERMAQILQGVPN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+KY+ +        +V+ DH+RS   +IADGI  +N GRGY
Sbjct: 240 NYETDLIFPIIETAAKIAGIKYKKSKAKTKTSLKVVGDHVRSVVQMIADGITASNVGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + +L+G     +  +       +  AYPE+ + + +I+  L  E+ +F 
Sbjct: 300 VLRRLIRRVVRHGQLIGIDGAFITQVAETAIASLEVAYPEVREREKIIKTELEREEAQFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  +++   K + ++G  AF LYDT+G PL++ Q+I   +GL  +D   F 
Sbjct: 360 KTLNRGEKLLGEIMAK--KPKQISGKDAFDLYDTYGFPLELTQEIAAEQGLT-VDEDGFA 416

Query: 420 QALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           +A++EQ+ R R AH ++ L   T +     L      T F+GY                 
Sbjct: 417 KAMKEQQDRGRSAHKTIDL---TVQSALEQLAATVHPTDFLGY----------------- 456

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                D +    + V A++ +GE V++A +G +V++  DQTPFYAE+GGQ+GD G   G 
Sbjct: 457 ----TDFS--AKAKVAALLVKGETVDQASAGSEVQIALDQTPFYAESGGQIGDRGYLNGK 510

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + ++I DVQK+++ IF+H+  +ERG L     L   ID   RRQ+  +H+ATHLL  AL
Sbjct: 511 DVVVRIEDVQKESD-IFIHYGRIERGTLEVGDKLTAQIDLACRRQVQAHHTATHLLQAAL 569

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   + Q GS +  D LRFD  +++ +T  +++ IE  +N  IA+     T +M   
Sbjct: 570 KNIVDESIGQAGSLVAFDRLRFDFNYNQAVTPEQIQEIETQINTWIAEAHTTETEVMPIA 629

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY   VRV+ V     GV S  LCGGTHV +T EI L  IV+E+ + 
Sbjct: 630 EAKAKGAVAMFGEKYGAEVRVMDVP----GV-SMELCGGTHVKNTSEIGLFKIVTEAGVA 684

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEAI G     +L  +D  ++ L+   K     +  R+  +  + +  Q      
Sbjct: 685 SGVRRIEAIAGPAVLEYLNVRDAVVRDLSDRFKAKPEELPERITTLQADLKTAQKQLDTL 744

Query: 778 KLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +   E L        +V  +   +  VDS+ LK+    L +K+  G ++L  +  
Sbjct: 745 KAQLALVKSEQLLDQAEPAGEVKVLVSQLEGVDSESLKTAAGRLLQKLGEGAVVLGSVPA 804

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           E K S++   +  ++++   A       AK   GGGGGGRP++AQ+GG + +K   A+
Sbjct: 805 EGKVSLVAAFSPKVIEQGLQAGKFVGAIAKQC-GGGGGGRPNLAQAGGRDPSKLADAL 861


>gi|297195516|ref|ZP_06912914.1| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152826|gb|EDY66040.2| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 854

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 336/902 (37%), Positives = 495/902 (54%), Gaps = 93/902 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+V
Sbjct: 4   AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT       + 
Sbjct: 63  QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSVADGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  +L+ITVY ED+EA ++W+ + G+ A++I R+    NFWSM   GPCGPCSEI +D+
Sbjct: 119 LEPEKLWITVYQEDDEAEQIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTG 227
           G       P   EEG      ERY+EIWNLVFMQ+E+   + K++  IL   P  +IDTG
Sbjct: 179 G-------PEFGEEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTG 231

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285
           +GLER+A +LQ   N Y+ D  + ++  + ++TG++Y  +  + V+ RV+ DH+R+S+ L
Sbjct: 232 LGLERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHGSDVSLRVVADHIRTSTML 291

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  + 
Sbjct: 292 IGDGVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVKDLVDVVIDTMGLQYPELITDRK 351

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
            IE    +E+  F K L  G  +LD  ++        +L GD AF L+DT G P+D+  +
Sbjct: 352 RIETVALAEEAAFLKALKGGTNILDTAVTETKAKGGTVLPGDKAFLLHDTWGFPIDLTLE 411

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462
           +   +GL+ +D   F + ++EQR RA+A +    +G      +  + +  G T+F GY  
Sbjct: 412 MAAEQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHANLSAYREIADSSGNTEFTGYTS 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                 T G S++V  +V  G     A  G +VEVV D+TPFYA
Sbjct: 471 ----------------------TEGESTVVGLLVD-GVSSPAASEGDEVEVVLDRTPFYA 507

Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQL D G   +  G  +Q+ DVQ+   G+ VH  +V+ G +    S    ID + RR
Sbjct: 508 EGGGQLADQGRIKLHSGAVIQVRDVQQPVPGVSVHKGVVQVGEVTVGASAYAVIDVRRRR 567

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+
Sbjct: 568 AIARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINE 627

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           ++A+ L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +
Sbjct: 628 VLARELDVHAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHN 682

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T ++ L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K       GR E
Sbjct: 683 TAQLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVK-------GRSE 735

Query: 762 EIWEEYRKLQLIHAKRK-LQLNVEDLSCHKIA-----------DVNFMSHIISEV----D 805
           E+ E   K+  +  K K  +  +E     K+            DV  ++ +   V     
Sbjct: 736 ELPE---KIAAMLGKLKDAEKEIEKFRAEKVLGAAAGLAQGAKDVRGVALVTGTVPDGTS 792

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKV 862
           + +L+ ++  ++ +I      +V +        L V+  +   R     A DL R +AK 
Sbjct: 793 ADDLRKLVLDVRGRIPGDRPAVVAVFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKT 852

Query: 863 LG 864
           LG
Sbjct: 853 LG 854


>gi|299141813|ref|ZP_07034948.1| alanine--tRNA ligase [Prevotella oris C735]
 gi|298576664|gb|EFI48535.1| alanine--tRNA ligase [Prevotella oris C735]
          Length = 886

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 332/922 (36%), Positives = 500/922 (54%), Gaps = 99/922 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P  + V  
Sbjct: 3   ANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KDVRR 61

Query: 64  V--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           V  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L+
Sbjct: 62  VDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLHLN 121

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY+TV+        + D+EA   W K   + AD II    +DNFW M +TGPCGPC+
Sbjct: 122 PEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGPCT 179

Query: 174 EIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D +       +PG    +++  + IEIWN+VFMQ+ ++       LP   IDTGMG
Sbjct: 180 EIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTGMG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNHRV 274
            ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      +  RV
Sbjct: 240 FERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAMRV 299

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333
           + DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  LLP L  EM
Sbjct: 300 VADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVQEM 359

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390
           G AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L   G+ E L+G  AF+L
Sbjct: 360 GQAYPELSAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTE-LDGTSAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + ++C      +D   FN+ + +Q++RAR  ++ + +G     W  ++E
Sbjct: 419 FDTYGFPLDLTE-LICREHGYTVDEKGFNEEMAKQKARARNAAV-VENGD----WEVIRE 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G   F+GYD    +  +   RKV  +K                               
Sbjct: 473 --GEQVFVGYDYTEYTCHILRYRKVTQKKNTF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   ++I D  K+     +H  IV++     +  
Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDT-KRENNQSIH--IVKQLPKDLQAE 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D + R   + NH+ATHLL +AL  +LG HV Q GS + P  LRFD +H + +T  
Sbjct: 560 FMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTEE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN +I ++ P+   R    E+A   GA AL G KY D+VRVV          
Sbjct: 620 ELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFG------P 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748
           S   CGG H  STG I    I+SESS+ AGIRRIEA+TGQ     +    + +  L S  
Sbjct: 674 SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSMF 733

Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--I 801
                LK +    +G  +E+ +E  K Q    +R      E+L   +  +VN +  I  +
Sbjct: 734 NNSKDLKATLKKFIGEHDEMRKEIEKFQAQAVER----TKEEL-LKRAQNVNGVQVIKAV 788

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLS 859
             ++    K +   L++ I   +++++G +   K  + ++ ++D++     NA  +   +
Sbjct: 789 LPLEPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIHEA 848

Query: 860 AKVLGGGGGGGRPHMAQSGGPN 881
           AK++  GGGGG+PH AQ+GG N
Sbjct: 849 AKLI-QGGGGGQPHYAQAGGKN 869


>gi|210135400|ref|YP_002301839.1| alanyl-tRNA synthetase [Helicobacter pylori P12]
 gi|210133368|gb|ACJ08359.1| alanyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 847

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 319/833 (38%), Positives = 471/833 (56%), Gaps = 56/833 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y   +F+GY+               C   P
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------C---P 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S  K I        EA   Q+V V+ ++TPFYAE GG +GD G         
Sbjct: 458 AKALGFFDSDFKEIT-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKGNEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +    LRFD +H+K +   EL+ +ED+VN  I ++L      M    A  
Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDSVNAQIFKHLNSQVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q    K  + +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 738 ---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|110637850|ref|YP_678057.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123058839|sp|Q11V49|SYA_CYTH3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110280531|gb|ABG58717.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 877

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 321/916 (35%), Positives = 511/916 (55%), Gaps = 82/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF   GH+++PS+ ++  NDPTLMFTN+GM  FK+ F G E P Y+ +   
Sbjct: 4   AEIRQQFLDFFASKGHQIVPSAPIVNKNDPTLMFTNAGMNQFKDYFLGNETPKYRRIADT 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  +W+LLT  + L + R
Sbjct: 64  QKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWSWELLTSVYKLPKDR 123

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T+++ D+        EA+  WKK   ++ D+I+     DNFW M E GPCGPCSEI 
Sbjct: 124 LYVTIFEGDDKEKLARDTEAYNFWKK--WIAEDRILLGNKKDNFWEMGEQGPCGPCSEIH 181

Query: 177 FD-----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            D     + + + G    +++  +  +EIWN VF+QF ++       LP   +DTGMG E
Sbjct: 182 VDLRTDEEVKAVDGKTLVNNDHPQ-VVEIWNNVFIQFNRKADGSLEELPDKHVDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+   +Q+K +NYD D+F  +I    +  G+KY  +   +   RV+ DH+R+ SF+IADG
Sbjct: 241 RLCMAIQKKKSNYDTDVFTPMIDFVAKAAGIKYGADEKTDIAMRVMADHIRAISFVIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N   GYV+RRI+RRA+ YA   L   EP +  L+  L  ++   +PEL   +  + 
Sbjct: 301 QLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLYKLVAVLADQLAHVFPELKSQQDFVA 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + ++ E+  F +TLD GL  L+ +   L   K   ++G  AF+LYDT G PLD++Q I  
Sbjct: 361 KVVQEEEISFLRTLDIGLSKLEQIREELKAKKATTIDGKTAFELYDTFGFPLDLIQLIAR 420

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRG 465
             GL  +D   F+  +  Q+ R++       + + E   +++  +    +F+GYD L+  
Sbjct: 421 ENGLT-VDEAGFDTEMAAQKQRSKK------AASVETSDWTIVTEDDEVEFVGYDHLIST 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           S+ +K                      + +  +G+         + ++V D TPFYAE+G
Sbjct: 474 SRIIK---------------------YRQVKTKGK--------DQYQLVLDTTPFYAESG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ GDTG  +    ++++ +  K+   + +H  I E+     +  +   ++   R     
Sbjct: 505 GQAGDTGTLVQGDKKIKVLNTVKE-NNLIIH--ITEQLPADLKAPVDCKVNVLQRSLTEN 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  +LGSHV+Q GS +    LRFD +H   +T  ELK +E  VN+ I +
Sbjct: 562 NHSATHLLHAALKQVLGSHVNQKGSLVNESVLRFDFSHFSKVTEEELKKVELIVNEKIRE 621

Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N+ +  R  +  E+A   GA AL G KY + VR+++  ++D    S  LCGGTHVSSTG+
Sbjct: 622 NISLNERRNVPIEEAKKLGAMALFGEKYGEYVRMIT--FDDS--FSRELCGGTHVSSTGK 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SESS+ AG+RRIEA+T   A   +  Q   L  +   +K +  ++V  +E++ 
Sbjct: 678 IGFFKITSESSVAAGVRRIEALTATAAEVFVDEQQTTLAKITELMK-NPKDLVKSLEDLL 736

Query: 765 EEYRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKELKSVMDAL 816
           EE   LQ           + +  +++D +  K+ D+N +    ++  VD+  ++ V   L
Sbjct: 737 EERIVLQKQLDEYQAEKSKAIAKSLKD-TVEKVGDINVIRAKLVLPSVDA--MRQVAYDL 793

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           ++ + + +++++ ++ + K ++ ++++++L+ D+  NA  + R  +K +  GGGGG+P  
Sbjct: 794 KQTVDN-LLLVLAVNVDGKPNIAVMISDNLVADKGLNASQMIRELSKEI-QGGGGGQPFY 851

Query: 875 AQSGGPNGNKADQAIA 890
           A +GG   N  D+ IA
Sbjct: 852 ATAGGKELNGLDKVIA 867


>gi|213963758|ref|ZP_03392008.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213953638|gb|EEB64970.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 877

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/924 (37%), Positives = 506/924 (54%), Gaps = 86/924 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP ++ V   QK
Sbjct: 6   IRNLFLKFFESKGHTIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGHAKPKHKRVADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEIYKIPKENLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF- 177
           +TV++         D+EAF +WK+   ++ D I+     DNFW M + GPCGPC+EI   
Sbjct: 126 VTVFEGSEEDGVPFDQEAFDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCTEIHVD 183

Query: 178 ---DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
              D+ +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG ER+ 
Sbjct: 184 IRSDEEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------RVIVDHLRSSSFL 285
            VLQ K +NYD D+F  LI   E++T   Y  N  V           RVI DH+R+ +F 
Sbjct: 244 MVLQNKQSNYDTDVFTPLIHKVEEITKSHYNSNGRVTPEQEQVNIAIRVISDHIRAVAFA 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+ +PEL + +
Sbjct: 304 IADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLAAQMGATFPELEKQQ 363

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LI   ++ E+  F +TL++GL++LD V+     D+ L+G  AF+LYDT+G P D+   I
Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNSPDKQLSGGKAFELYDTYGFPKDLTALI 422

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +GL  +D   F   L++Q+ R+RA      +      W  L++     +FIGYD L 
Sbjct: 423 LSEKGLT-MDEEGFEVQLQKQKERSRA-----AAQVKTDDWVVLRDD-DEEEFIGYDTLE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + R+V  QK                            G   ++VF+ TPFY E 
Sbjct: 476 AVVRLVKYRRVESQK---------------------------DGTHFQLVFNTTPFYPEG 508

Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS--LVLTIDYQNRR 581
           GGQ+GD G     +G  + I D  KK   + +H  I E   L TE++      +    R 
Sbjct: 509 GGQVGDKGTLQAANGELIYILDT-KKENNLIIH--IAEH--LPTELNDPFKAEVHLVARE 563

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +TS ELK +E  VN 
Sbjct: 564 MAEANHSATHLLHQALREVLGTHVEQKGSRVAPEALRFDFSHFAKLTSDELKEVERLVNK 623

Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I + +P+   R +  + A+ SGA AL G KY DRVR+  +++ D    S  LCGGTHV 
Sbjct: 624 RIFEKIPLQEHRNIPIQQAVESGAMALFGEKYGDRVRM--IQFGD----SKELCGGTHVK 677

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG+I    I+SE ++ AGIRRIEAIT   A  + + Q++ ++ +   +K +Q + V  +
Sbjct: 678 NTGDIWFFKIISEGAVAAGIRRIEAITRGGAMQYFIEQEQLVERIKETVKNTQ-DPVKAI 736

Query: 761 EEIWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMD 814
             + EE    +R+L+ +  ++  QL   +L   +  ++N +  +I +VD++   LK +  
Sbjct: 737 THLQEENAALHRELEQLKKEQAKQLKA-NLKA-EFTEINAIQCLIKQVDAEVATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRP 872
            L  +++   +      +E KA +L  + ++L      +A  + R   K +  GGGGG+P
Sbjct: 795 ELGNEVKDAFVFFASAHEEGKALLLCYINKELAQAKGLDAGKIVRELGKYI-HGGGGGQP 853

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
             A +GG       +A+  V  FL
Sbjct: 854 FFATAGGKKPEGIAEALFKVKDFL 877


>gi|149369737|ref|ZP_01889589.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149357164|gb|EDM45719.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 872

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 340/920 (36%), Positives = 491/920 (53%), Gaps = 78/920 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FLEFF+   H ++PS+ ++  +DPTLMF NSGM PFK  F G  +P    +T 
Sbjct: 3   ANEIRAAFLEFFESKKHSIVPSAPMVLKDDPTLMFVNSGMAPFKEFFLGNAQPKNTRLTD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+   +D+ 
Sbjct: 63  SQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKEEAIAWAWELLTEVLKIDKD 122

Query: 124 RLYITVYD---------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            LY+TV++          D EA+ +WKK   ++ D+I++    DNFW M + GPCGPCSE
Sbjct: 123 MLYVTVFEGSDDADNLKMDTEAYDIWKKY--IAEDRILKGNKKDNFWEMGDQGPCGPCSE 180

Query: 175 IFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           I  D    + +    G    + +  + +EIWNLVFMQ+ ++      ILP   IDTGMG 
Sbjct: 181 IHVDIRSAEEKAAVDGKSLVNMDHPQVVEIWNLVFMQYNRKANGTLEILPNKHIDTGMGF 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+  VLQ+  +NYD D+F  +I+  E +T  +Y  +  ++   RVI DH+R+ +F IAD
Sbjct: 241 ERLCMVLQDVKSNYDTDVFTPIIREIETITDTEYGKDEKIDIAIRVISDHVRAVAFSIAD 300

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L ++MG A+PE+   K LI
Sbjct: 301 GQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVTVLVSKMGEAFPEIKSQKQLI 360

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E  ++ E+  F +TLD+GLVLLD ++        ++G   F+L DT+G P D+   IL  
Sbjct: 361 ENVIKEEESSFLRTLDQGLVLLDRMIEGQKGSTEISGAKVFELKDTYGFPEDLTDLILRE 420

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G        F Q L EQ++R +       S +    W  L +     +F+GYD L  + 
Sbjct: 421 KGYT-YSKEEFEQKLAEQKARGKE-----ASESKNDDWTILLDD-AEEEFVGYDRLSANV 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            +   RKV  +K                            G+  ++VF+ TPFY E GGQ
Sbjct: 474 KLTRYRKVTSKK---------------------------DGEMYQLVFNLTPFYPEGGGQ 506

Query: 528 LGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           +GD G     G   L I D +K+   I      +   +  T       +D  +R ++  N
Sbjct: 507 VGDKGYVQAPGGDVLYILDTKKENNVIIHFTKNLPNNLTET---FKAQVDENHRFRIECN 563

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH  L  ILG+HV Q GS +    LRFD +H   +T+ EL+ +ED VN  IA  
Sbjct: 564 HSATHLLHQGLREILGTHVEQKGSSVHSKYLRFDFSHFSKVTAEELQEVEDFVNARIAGR 623

Query: 647 LPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           L     R +  E+AIA GA AL G KY D VR V          S  LCGGTHV +T +I
Sbjct: 624 LDFEEKRAVPMEEAIAEGAMALFGEKYGDAVRTVRFG------QSIELCGGTHVKNTADI 677

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I SES++ +G+RRIEAIT    ++H    D+    + S L  ++  V   +E+I  
Sbjct: 678 WHFKIKSESAVASGVRRIEAITNHALKNHFSDNDKAFSEVKSLLNNTKKPVEA-IEKIQA 736

Query: 766 EYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQK 818
           E  +L     QL+  K K   N++    ++I ++N  + +  E  +D+  LK +   L  
Sbjct: 737 ENSELKKQIEQLLKDKAK---NIKGDLKNQIVEINGANFLAKELDLDAGGLKDLAFELGG 793

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +I++ + +L G     KA +   + +DL      NA  + R   K +  GGGGG+P  A 
Sbjct: 794 EIEN-LFILFGSKAGGKALLTCYIDKDLAKEKDLNAGTIVRELGKHI-QGGGGGQPFFAT 851

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N    ++A+  V +++
Sbjct: 852 AGGKNPEGIEKALEAVKAYI 871


>gi|87300751|ref|ZP_01083593.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87284622|gb|EAQ76574.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 896

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 341/921 (37%), Positives = 505/921 (54%), Gaps = 91/921 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL F++  GH  + S+SL+P +DPT++ T +GM+PFK +F GQ +P     T+ 
Sbjct: 19  AEIREAFLAFYEARGHRRMASASLVP-DDPTVLLTIAGMLPFKPVFLGQAEPPSPRATSS 77

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  A+  AW+L TK F LD + 
Sbjct: 78  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTEAMTWAWELATKVFGLDPKH 133

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ +D+EA  +W+   G+   +I+R+   DNFW    TGPCGPCSEI++D    + 
Sbjct: 134 LVVSVFRDDDEAAVIWRDTVGVDPRRIVRLGEADNFWVSGPTGPCGPCSEIYYDFKPEL- 192

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQF +  +     L   +IDTG+GLERMA +LQ   NNY
Sbjct: 193 GVEHLDLEDDSRFIEFYNLVFMQFNRDAEGNLTPLENRNIDTGLGLERMAQILQGAANNY 252

Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+ +  + G+ Y   +     + +VI DH R+ + LIADG+  +N GRGY+L
Sbjct: 253 ETDLIYPLIETAATLAGVNYRQLDARGQTSLKVIGDHSRAITQLIADGVTASNLGRGYIL 312

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG T P +  +  A    M  AYP+L++ +  I   L  E+ RF +T
Sbjct: 313 RRLLRRVVRHGRLLGITTPFLTAMGEAAIALMVDAYPQLVERRDAIMAELAREEARFLET 372

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VLS  G  +I +G+ AF+LYDT+G PL++ ++I    GLA +D+  F  A
Sbjct: 373 LERGEKLLAEVLS-AGPSQI-SGEQAFELYDTYGFPLELTEEIAEEHGLA-VDLAGFEAA 429

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +E QR RA+A S+ L   T +    ++ E+  AT F GY+ L              + P 
Sbjct: 430 MEAQRQRAKAASVRLDL-TLQGAIEAMAEQLPATDFRGYEAL--------------EHP- 473

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--- 538
                   S V A+V  GE  + A +G  V++V D TPFY E+GGQ+GD G   G     
Sbjct: 474 --------SQVMALVVNGEPAQGARAGDAVQIVLDSTPFYGESGGQIGDRGVLAGGAPGA 525

Query: 539 -------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                  +R++    Q+K   + VHH  +ERG L    ++   +D   RR++  +H+ATH
Sbjct: 526 GAEAGVIVRIEAVSHQRK---LIVHHGRIERGELALGDTVTALVDRACRRRVQAHHTATH 582

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  ++   ++Q GS +  + LRFD      I+  +L+ IE+ +N  IA    +  
Sbjct: 583 LLQAALKQLVDPSIAQAGSLVDFERLRFDFHCPHAISPEDLERIEERINGWIADAHALEV 642

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M  E A ++GA A+ G KY D VRVV V     GV S  LCGGTHV++T EI L  IV
Sbjct: 643 REMELERARSAGAVAMFGEKYADIVRVVDVP----GV-SMELCGGTHVANTAEIGLFRIV 697

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AGIRRIEA+ G     +L  +D  +++L    KV  G ++ RV  + +E +   
Sbjct: 698 SESGVAAGIRRIEAVAGPAVLDYLKERDTVVRALGDRFKVQPGEILERVSGLQDELKAAS 757

Query: 772 LIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGI----- 824
              A  + +L +   S       +V     +++ +D  E  ++  A Q ++Q G+     
Sbjct: 758 RALAAARSELALARASALATGALEVGAFRVLVARLDGVEGAALQTAAQ-QLQEGLGSAAA 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG-------------- 870
           ++L G+   ++ + L++V             A   A+V+  G   G              
Sbjct: 817 VVLGGLPAPEEPAKLVLV-------------AAFGAEVIAAGPKAGSFIAVVAKRCGGGG 863

Query: 871 --RPHMAQSGGPNGNKADQAI 889
             RP +AQ+GG +    D A+
Sbjct: 864 GGRPQLAQAGGRDAASLDPAL 884


>gi|322391767|ref|ZP_08065232.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321145247|gb|EFX40643.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 872

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 349/927 (37%), Positives = 512/927 (55%), Gaps = 86/927 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQIRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWVEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE          L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPDHIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L      +++G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKAKGQSVIDGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  ID   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-IDRDGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESHFNYNASQ--- 467

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                       +SS + AIV     V EAVS     ++F +TP
Sbjct: 468 ----------------------------LSSKLVAIVADNTEV-EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G    A+G+ +   +TDVQK   G  +H   V    L       L ID
Sbjct: 499 FYAEMGGQVADHGQILDAVGN-VVANVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAIKTIETDIDTAKEMGAMALFGEKYGKNVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV++T EI L  IV E  I +G RRI A+TG+ A      Q++ LK  A+ LK  Q   
Sbjct: 672 THVANTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYRQQEDALKVAAAALKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLSCHKIADVNFMSHIISEV---DSKEL 809
           V  +VE + E+ ++LQ  +A+ K +   +   D+  H + + N  S I S+V   D+  L
Sbjct: 732 VPHKVEALQEQVKQLQKENAELKEKAAAVAAGDVFKH-VQEANGHSFIASQVSVSDAGAL 790

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           ++  D  ++K  S +++LV    +K   ++   T+D+    +A ++ +  A ++  G GG
Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNVVKELASIV-DGRGG 845

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+P MA +GG N  K  + +  VA  L
Sbjct: 846 GKPDMAMAGGSNQAKIQELLDAVADKL 872


>gi|262527560|sp|B1HUK4|SYA_LYSSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 908

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 336/929 (36%), Positives = 501/929 (53%), Gaps = 87/929 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +T  QK
Sbjct: 27  IRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRITNAQK 86

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
            +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K    D   
Sbjct: 87  SIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMGFDPEL 142

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180
           L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+G    
Sbjct: 143 LSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGVEYG 199

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E  P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +V+Q
Sbjct: 200 SDENDPEMYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 257

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284
               N+D DLF  +I+  E+    KY+  + V+               +VI DH+R+ +F
Sbjct: 258 NVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRTVAF 317

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ +  
Sbjct: 318 AIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVTEKC 377

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401
             I+  +++E+ RF +TLD GL + + V       G D I   D AF+LYDT+G P+++ 
Sbjct: 378 EFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGAD-AFRLYDTYGFPIELT 436

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           ++     G+  +D   F  A+EEQR RARA    + S   +     L     A++F+G+D
Sbjct: 437 EEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNE--VLANLTVASEFVGFD 493

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L  +                       + + A++  G++ + A  GQ+  V+  +TPFY
Sbjct: 494 TLVAN-----------------------TEIAAMIVNGQVEKVASEGQEALVILAKTPFY 530

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GGQ+ D+G    D     + DVQK   G  +H  IVE G +  E ++   +   +R 
Sbjct: 531 AEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDDRN 590

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  VN+
Sbjct: 591 LIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNE 650

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  ++ VV   M  + A A GA AL G KY D VRVVS+     G +S  LCGG HV  
Sbjct: 651 KVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKR 705

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +V+
Sbjct: 706 SSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQ 765

Query: 762 EIWEEYRKLQL-----------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +  +Y++LQ             H+    + +  +  CH     +F        D+  L+
Sbjct: 766 ALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHS----SFYKS--RSKDNNLLR 819

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AVDLARLSAKVLGGGGG 868
            +MD L+  +   +I+L  +  +   ++   +T  +++R+         +  + L    G
Sbjct: 820 QMMDDLKALMPKAVIVLGAVDGDLSDAMCRGIT--IINRWQLPCWKYREIWCQKLVVVIG 877

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G RP MA +G  + +K D+A+  V  ++K
Sbjct: 878 GVRPDMAMAGAKDASKLDEALLSVYDYVK 906


>gi|161506983|ref|YP_001576937.1| alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|205830127|sp|A8YTJ0|SYA_LACH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160347972|gb|ABX26646.1| Alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 879

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 346/929 (37%), Positives = 519/929 (55%), Gaps = 92/929 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L +
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 123 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG LP
Sbjct: 237 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE  ++
Sbjct: 297 SNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENVIQ 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF  TLD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     GL
Sbjct: 357 NEEKRFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F+  ++ Q+ RAR     L S G  +    ++K+K              S F 
Sbjct: 417 K-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SVFE 461

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ+ 
Sbjct: 462 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 508

Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585
           D G     DG +  ++TDVQ       +H   +   IL  E     VL ID + R  L  
Sbjct: 509 DHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I
Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K ++  N++ +++ + 
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740

Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810
            +    Q        Q+N               DL+    +ADVN M+         +L+
Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + D  +   +S +++L     + KA+++I + +  LD+   A DL +  A +  GGGGG
Sbjct: 792 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKVAPIF-GGGGG 849

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP+MAQ+GG      + AI  V   + K
Sbjct: 850 GRPNMAQAGGKRPEGLNDAIKAVIEEISK 878


>gi|109946744|ref|YP_663972.1| alanyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|122973456|sp|Q17ZF3|SYA_HELAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109713965|emb|CAJ98973.1| alaS [Helicobacter acinonychis str. Sheeba]
          Length = 847

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 328/892 (36%), Positives = 489/892 (54%), Gaps = 69/892 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG    P     T+ Q
Sbjct: 3   IRNEFLQFFKNKGHEIYPSMPLVP-NDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EAFKLW+K   +  DKI ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAFKLWEKF--VPTDKIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RR++ +  L+G  E  +  ++  +C +    +  L ++K ++ +    E++RF +T
Sbjct: 297 RRILRRSLRHGYLMGLKEAFLYRVVGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL  ++I +G +AFKLYDT G PLD+  D+L   G A +D+  F   
Sbjct: 357 LESGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRNHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+      +   F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKRNNAD---FSTILNAYAPNVFVGYETTECFSQALGFFDSDFKEMT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 ETNP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G+  + ++++      +   V+      R +++ +HSATHLL  AL
Sbjct: 507 DEEAALVLDTKNFFGL--NFSLLKIKKALKKGDQVIAQVSNERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +HSK +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRILKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+    LK    +++  + ++ E  +  Q   A  
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNARILLK--NNDLIAGINKLKESVKNSQ--KASV 735

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            + L +E         +N  S ++  V+  ++K ++D L+ K +  + M+     E+ + 
Sbjct: 736 PMDLPIE--------TINGTSVVVGVVEQGDIKEMIDRLKNKHEKLLAMVFKQENERISL 787

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              V    +     A ++A++      GG GGGR   A +GG +  K   A+
Sbjct: 788 ACGVKNAPIKAHVWANEVAQIL-----GGKGGGRDDFASAGGKDIEKLQAAL 834


>gi|312867236|ref|ZP_07727446.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311097365|gb|EFQ55599.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 872

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 343/931 (36%), Positives = 508/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG     +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL+ G      ++  L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESSFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H+     +++  +S  D
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   ++   T+D+    +A ++ +  A ++  
Sbjct: 787 AGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNVIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG N  K  + +  VA  L
Sbjct: 842 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|116074098|ref|ZP_01471360.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116069403|gb|EAU75155.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 892

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 345/908 (37%), Positives = 506/908 (55%), Gaps = 66/908 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF+  GH+   S+SL+P  DPT++ T +GM+PFK IF GQ++      T+ 
Sbjct: 18  AEIRAAFLDFFEARGHKRTASASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCATSS 76

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F LD + 
Sbjct: 77  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLDPKN 132

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL- 191

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 192 GDDGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQQVPNNY 251

Query: 245 DIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+ +  + G+ Y+        + +VI DH R+ + LI DG+  +N GRGY+L
Sbjct: 252 ETDLIYPLIETAAGLAGVDYKALDEKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 311

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG  +P +  +  A    M  AYP+L++ K +I   L+ E+ RF +T
Sbjct: 312 RRLLRRVVRHGRLLGIAKPFLTVMGEASIALMQEAYPQLLERKEVILAELKREEARFLET 371

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VL+   K   + G  AF+LYDT+G PL++ Q+I    GL  +D+  F  A
Sbjct: 372 LERGEKLLADVLA--AKPAQIAGAQAFELYDTYGFPLELTQEIAEEHGLT-VDLAGFEAA 428

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +EEQR RA+A ++ +   T +     +  +  AT F GYDLL                  
Sbjct: 429 MEEQRQRAKAAAVSIDL-TLQDAIDQVAAELEATSFRGYDLLEH---------------- 471

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR- 540
                  SS V+A+V  GE  ++A +G  V+VV D TPFY E GGQ+GD G  +GDG   
Sbjct: 472 -------SSSVQALVVNGEPAQQAGAGDAVQVVLDTTPFYGEGGGQVGDRGVLVGDGPDG 524

Query: 541 ---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              + + +   +   +FVH   VERG L     +   +D   RR+   NH+ATHLL  AL
Sbjct: 525 NGLIVVIEGVSRNRSVFVHSGRVERGSLSIGDVVHGQVDKACRRRAQANHTATHLLQAAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   + Q GS +  + LRFD    + + + EL+ IE  +N  I++   +  + M  E
Sbjct: 585 KQVVDPGIGQAGSLVDFERLRFDFHCPRAVKADELEQIEALINGWISEAHSLEVQEMAIE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+ES + 
Sbjct: 645 QAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVAESGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIH 774
           AGIRRIEA+ G    ++L  +D  +K L    K     +V RV  + +E +   K     
Sbjct: 700 AGIRRIEAVAGGAVLAYLNERDLVVKQLGDRFKAQPAEIVERVLALQDELKSTGKALAAA 759

Query: 775 AKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG--I 830
                      L+   +A  ++  +   +  VD   L+    +L  ++  G  +++G   
Sbjct: 760 QAELAVAKSAALASKAVAVGELQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLP 819

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLA--RLSAKVLGG------GGGGGRPHMAQSGGPNG 882
               +  V++V        F    +A  + + K +GG      GGGGGRP++AQ+GG +G
Sbjct: 820 DPADQGKVILVAA------FGKTVIAQGQQAGKFIGGIAKLCGGGGGGRPNLAQAGGRDG 873

Query: 883 NKADQAIA 890
              D A+A
Sbjct: 874 GALDGALA 881


>gi|251782836|ref|YP_002997139.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391466|dbj|BAH81925.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 872

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 345/918 (37%), Positives = 506/918 (55%), Gaps = 76/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y ED++++  W     L  D    I   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKEKLYMTYYPEDKDSYNRW---LALGVDPSHLIPLEENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGM 228
           FD+GE       G        E +RYIEIWN+V  QF    +  + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        + 
Sbjct: 411 MAEEAGYK-IDHDGFKAAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIT 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S F+ E   V  +   I + N          ++ E+V E   GQ + +VFDQTPFYAE
Sbjct: 457 ESSTFLYETETVDARLAVIIVDN----------ERSEVVSE---GQAL-LVFDQTPFYAE 502

Query: 524 AGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            GGQ+ D G    A GD I  ++ DVQK   G  +H   V    L  +    L ID++ R
Sbjct: 503 MGGQVADRGVIKNANGD-IVARVIDVQKAPNGQALHTVDV-LASLALDTVYTLDIDHKRR 560

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             +  NH+ATHLLH AL  I+G H +Q GS    + LRFD TH + +T  EL+ IE+ VN
Sbjct: 561 YAVEKNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVN 620

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I + L + T   + E A + GA AL G KY   VRVV +     G +S  LCGGTH++
Sbjct: 621 QQIWKALAITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLN 675

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGR 759
           +T EI L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LK  Q   V  +
Sbjct: 676 NTSEIGLFKILKEEGIGSGTRRILAVTGQQAFESFRKQEDALKEIAHTLKAPQMDQVPAK 735

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMD 814
           V  + E+ R LQ  +A+ K +           ++ +VN + +I S+V   D+  L++  D
Sbjct: 736 VVSLSEQLRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFAD 795

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             ++K  S +++LV    E K +VL+          +A ++ ++ A ++  G GGG+P M
Sbjct: 796 NWKQKDYSEVLVLVAAIGE-KVNVLVASKS---KEVHAGNMIKVLAPIV-SGRGGGKPDM 850

Query: 875 AQSGGPNGNKADQAIAGV 892
           A +GG + +K    +A V
Sbjct: 851 AMAGGSDASKISDLMAAV 868


>gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa]
 gi|313471500|sp|B9HQZ6|SYAP_POPTR RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa]
          Length = 994

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 338/918 (36%), Positives = 520/918 (56%), Gaps = 95/918 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FLEF+    H++LPS+SL+P +DPT++ T +GM+ FK IF G+        TT Q
Sbjct: 102 AIRRRFLEFYASRSHKVLPSASLVP-DDPTVLLTIAGMLQFKPIFLGKAPRQVPRATTAQ 160

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+L TKEF L   RL
Sbjct: 161 KCIRT----NDVENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPADRL 216

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +++VY++D+EAF++W    G+  ++I R+   DNFW+   TGPCGPCSE+++D     P 
Sbjct: 217 WVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYD---FHPE 273

Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
               +++ G+  R+IE +NLVFMQ+ + +      L + +IDTG+GLER+A +LQ+  NN
Sbjct: 274 RGYKNTDLGDDSRFIEFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPNN 333

Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   +I+ + ++  + Y   +    +N ++I DHLR+  +LI+DG+LP+N GRGYV
Sbjct: 334 YETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGYV 393

Query: 301 LRRIMRRAMCYARLLGYT---EPLMMHLLPALCTEMGSAYPEL---IQAK-LLIEETLRS 353
           +RR++RRA+   RLLG     E  +   LPA+  ++    P +   ++A+   I + L+ 
Sbjct: 394 VRRLIRRAVRTGRLLGVKGGGEDGV--FLPAIAEKVIELSPHIDPDVKARGHSILDELQR 451

Query: 354 EDERFGKTLDRGLVLLDGVLS----HLGKDEI---LNGDVAFKLYDTHGLPLDIMQDILC 406
           E+ RF +TL+RG  LLD +L+    +  K E    L+G   F LYDT G P++I  ++  
Sbjct: 452 EELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAE 511

Query: 407 ARGLAGIDIISFNQALEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            +G+  ID+  F   +E QR +++A      L + +G        L E    T+F+GYD 
Sbjct: 512 EQGVK-IDMDGFEVEMENQRRQSQAAHNVVKLAVENGG------DLAENVHDTEFLGYDT 564

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                          ++V++++  G+ V +   G +VEV+ ++TPFYA
Sbjct: 565 L-----------------------SARAVVESLLLNGKSVIQVSEGSEVEVLLNKTPFYA 601

Query: 523 EAGGQLGDTG--CAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           E+GGQ+GD G      D  +    ++I DVQK    +FVH   +  G+L     +   +D
Sbjct: 602 ESGGQIGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVD 661

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD    +P+  +EL+ IE
Sbjct: 662 AKLRQRAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELEEIE 721

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + +N  I     + T++M+  DA  +GA A+ G KY ++VRVV V     GV S  LCGG
Sbjct: 722 NLINGWIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVP----GV-SMELCGG 776

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THVS+T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV    V
Sbjct: 777 THVSNTSEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEV 836

Query: 757 VGRVEEIWEEYR----KLQLIHAK----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
             RV+ + EE R    ++  + AK    +   +  +  S      +  +   + + D+  
Sbjct: 837 TTRVDNLLEELRTVRNEVSALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADA 896

Query: 809 LKSVMDALQKKIQSGIIMLVG-ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--- 864
           LKS  + L   +Q    +++G    E K S++   T  +      VD+   + K +G   
Sbjct: 897 LKSAAEYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGV------VDIGIQAGKFIGPIA 950

Query: 865 ---GGGGGGRPHMAQSGG 879
              GGGGGGRP+ AQ+GG
Sbjct: 951 KLCGGGGGGRPNFAQAGG 968


>gi|331701288|ref|YP_004398247.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128631|gb|AEB73184.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 880

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 338/920 (36%), Positives = 514/920 (55%), Gaps = 67/920 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSGQIRQMYLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 61  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAITWAYELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +LY+TVY +D++A   W+K+ G++ D II I   DNFW + + GP GP SEIF
Sbjct: 117 WFGWDPDKLYMTVYPKDKDAKMYWEKV-GVAPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+      P   E     E +R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 173 YDRGKDFDNLAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVNH--RVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E+++   KY+ N   N   R+I DH R+ +  I D
Sbjct: 233 RVVSIFQHARTNFETDLFLPMIRKTEELSDNKKYDTNKKDNEAFRIIADHARAITVAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG  E  +  L+P +   + S YP++++ K  I 
Sbjct: 293 GALPSNVGRGYVIRRLIRRAIVNGQRLGINEAFLYKLVPVVGQTLESYYPDVLKQKDYIA 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL L + V+  +       ++G  AFKLYDT+G P+++ ++   
Sbjct: 353 KVVRSEEDRFNETLTDGLKLFNQVVKDAKANHQTTIDGPTAFKLYDTYGFPVELTEEEAN 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRG 465
             GL+ +D   F   +++Q+ RAR    G  S G    +   +K+    ++++GYD L  
Sbjct: 413 DAGLS-VDKPGFEVEMQKQKDRARKARSGAKSMGVQRDLLIEIKD---PSEYVGYDTL-- 466

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                 D   L +                IV+  ++V+ +  G  VEV+FD+TPFYAE G
Sbjct: 467 ----DVDHAELLE----------------IVENEKLVDHSKGGS-VEVIFDKTPFYAEMG 505

Query: 526 GQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           GQ+ D G  +   GD +   + DVQ    G  + H +  +  L    +  L +D     +
Sbjct: 506 GQVADRGVVLDEEGDKV-ADVVDVQHAPNGQNL-HTLKTQEPLEKGKTYHLIVDKLFHSR 563

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATHLL  +L  +LG H  Q GS + P+ LRFD  H   +T  +L+ +ED VN  
Sbjct: 564 VEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPNYLRFDFNHFGQVTDEDLQKVEDMVNRQ 623

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I   + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV++T
Sbjct: 624 IFNEIDVNTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVNNT 678

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761
            +I L  IVSES + AG+RRIEA+T + A   L   +++LK +A  LKV+Q  +   RV+
Sbjct: 679 RDIGLFKIVSESGVGAGVRRIEAVTAKDAFKLLNDHEKELKQIAGDLKVTQIKDTPKRVD 738

Query: 762 EIWEEYRKL----QLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDAL 816
           ++  E + L    Q + AK   Q      +  K A   + ++ II +    +L+ + D  
Sbjct: 739 QLLGEIKDLTQKQQSLEAKLAGQQAQNVFADKKTAGKYSIITGIIKDAGMDQLRQLADTW 798

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + K  S +++L   S +K   ++ V  E +     A DL +  A  +  GGGGGRP+MAQ
Sbjct: 799 RSKHLSDVLVLGTGSGDKANLIVAVADEQIKAGIKAGDLIKSIAGNI-KGGGGGRPNMAQ 857

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG +    D+A++    +L
Sbjct: 858 AGGKDPAGLDKAMSAAVDWL 877


>gi|325285608|ref|YP_004261398.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324321062|gb|ADY28527.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 871

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 346/922 (37%), Positives = 509/922 (55%), Gaps = 87/922 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ FLEFF+   H+++ S+ ++  +DPTLMFTN+GM  FK  F G  +     V   QK
Sbjct: 6   IRSQFLEFFKNKTHKIVSSAPMVIKDDPTLMFTNAGMNQFKEFFLGNTEAKNTRVVDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+LLTK F +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEDAISWAWELLTKVFKIDESSLY 125

Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           +TV+         + D+EA  LWKKI  +   +I+     DNFW M + GPCGPCSEI  
Sbjct: 126 VTVFEGSKDKDNLEMDQEALDLWKKI--IPESQILFGNKKDNFWEMGDQGPCGPCSEIHV 183

Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D    + +    G    + +  + +EIWNLVFMQ+ ++   E   LP   +DTGMG ER+
Sbjct: 184 DIRSAEEKAKVSGAELVNMDHPQVVEIWNLVFMQYNRKANGELENLPAKHVDTGMGFERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291
             V+Q   +NYD D+F  +I+  E +T  +Y  N   N   RVI DH+R+ +F IADG L
Sbjct: 244 CMVMQGVQSNYDTDVFTPIIREIETITNAEYNKNEDTNIAIRVIADHIRAVAFSIADGQL 303

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG A+PEL + K LIE  
Sbjct: 304 PSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTNTMGDAFPELKEQKQLIENV 363

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F KTLD+GLVLLD V++     + ++G  AF+LYDT+G P+D+   IL  RG 
Sbjct: 364 VKEEEHSFLKTLDQGLVLLDSVINS-ASSKTIDGRKAFELYDTYGFPIDLTALILSERGY 422

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A++EQ++R+R+      S  +++ W  L +     +F+GYD+L  +  + 
Sbjct: 423 T-LDEKGFDAAMQEQKNRSRS-----ASEVSKEDWEVLLQD-AEQEFVGYDVLETNVRLV 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           + RKV  +K                            G++ ++VF+ TPFYAE GGQ+GD
Sbjct: 476 KYRKVTSKK---------------------------EGKQYQLVFNITPFYAEGGGQVGD 508

Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHS 588
            G     +G  + I D +K+   I +H A   + + +    +    +D + R++ + NH+
Sbjct: 509 KGYLEAQNGDVVYILDTKKENNEI-IHFA---KNLPKNTTDIFKAVVDVKQRQRTASNHT 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T+ +LK +ED VN  I  NLP
Sbjct: 565 ATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTTEQLKEVEDFVNARIEGNLP 624

Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   R +  ++A+ +GA AL G KY D VR++          S  LCGGTHV +TG+I  
Sbjct: 625 LEEKRNIPMQEALDAGAMALFGEKYGDTVRLIRFG------QSVELCGGTHVQNTGDIWH 678

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I SE ++ +GIRRIEAIT    +      +E L  +   L  ++ + V  V  + EE 
Sbjct: 679 FKIKSEGAVASGIRRIEAITSDAVKDFYADNNEVLTDIKEVLNNAK-DPVKAVVSLQEEN 737

Query: 768 RKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-----SKELKSVMDALQ 817
            KL     QL+  K K   N++    +++ DVN +  +  +VD      K+L   M A  
Sbjct: 738 NKLKKEIEQLLKDKAK---NLKGDLLNELQDVNGVQFLAKKVDLDPAGIKDLCFNMGA-- 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875
               + + +L G     KA++   ++++L      NA  + R   K +  GGGGG+P  A
Sbjct: 793 --NATNMFLLFGAENNGKATLSCYISKELAAEKDLNAGAIVRELGKYI-QGGGGGQPFFA 849

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N     +A+    +++K
Sbjct: 850 TAGGKNPGGIAEALDKAIAYIK 871


>gi|295099596|emb|CBK88685.1| alanyl-tRNA synthetase [Eubacterium cylindroides T2-87]
          Length = 875

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 330/911 (36%), Positives = 501/911 (54%), Gaps = 64/911 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP    +   
Sbjct: 7   NQVRQMFLDYFKSKGHMIEPGASLVPNNDPTLLWINAGVAALKKYFDGSEKPRCNRIANA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT E    +D+
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSEEWMGIDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +D++A+K+W ++  +    I++  T DNFW + + GP GP SEIFFD+GE 
Sbjct: 123 DKLYVSVYTDDDQAYKIWTEVCKVDPSHILK--TYDNFWEIGK-GPGGPDSEIFFDRGEK 179

Query: 183 I-PGGLPGS----SEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234
             P GL         E +RY+E+WN+VF Q++   + ++++   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPEGLGEKLFFEEMENDRYVEVWNVVFSQYDCDPELDRKDYKELPQKNIDTGMGLERLV 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q+   N+D DLF  +I A+E++    YEG   + +RVI DH+R+ +F ++DG   +N
Sbjct: 240 ALIQDGETNFDTDLFLPIIHATEKLAKYPYEGEYKMAYRVIADHIRTLTFALSDGANFSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GRGYVLRR++RRA+ +   LG  +  +  L+P +   M   YP L +     ++ ++ E
Sbjct: 300 SGRGYVLRRVLRRAVRFGLKLGLEDAFLYKLVPVVADTMQDFYPYLQEHVEFNQKLIKVE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ++ F KTL  G  LLD  +S   KD  L+G+V FKLYDT+G P ++ Q+I    GL  + 
Sbjct: 360 EDTFKKTLKNGQALLDEEISK-AKDGKLSGEVVFKLYDTYGFPFELTQEIASESGLE-VS 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+  + +Q+ RAR       S  T+     L      + FIGYD       M+ D K
Sbjct: 418 REEFDVEMNKQKERARNARNTKDSFATQNA--ELMNFTQESTFIGYD------HMECDGK 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           ++                 A+ + G +V+      + +V+ D T FYAE+GGQ+ D G  
Sbjct: 470 II-----------------ALFKDGHMVD--TLSDEGQVILDTTCFYAESGGQVADAGTL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             DG+  ++TDVQK      +H   +E GIL   MSL   +D   R+  + NHS THLL 
Sbjct: 511 SADGVMCKVTDVQKARNKQHIHSVEIESGILEVGMSLHCHVDEAKRKATTANHSCTHLLQ 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G H+ Q GS +  + LRFD  H + +T+ +L  IED VN  IA   PV   IM
Sbjct: 571 SALKEVVGEHIHQAGSYVCDEYLRFDFNHFEKLTTKQLDEIEDLVNQYIAGAYPVTKEIM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A  SGA AL   KY DRVRVV++     G  S   C G HV +T +I L  I+SE 
Sbjct: 631 DIEEAKKSGATALFNEKYGDRVRVVTM-----GDVSKEFCAGCHVENTSQIGLCKIISEE 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           SI +  RRI A TG +A      +   L+++A S  +    N+  +V+  ++    LQ  
Sbjct: 686 SIGSDARRIVAKTGYQAYKECASEKNMLENIAISAKQKGIKNIDTKVDAAYQNMHALQKE 745

Query: 772 ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                  I A +  +   E +S   +  VN +   +  +D+  LK ++  L+ K  + + 
Sbjct: 746 IEQLKNQIFALKSNEWVNETVS---LGSVNALIKKVEGMDAGALKDIVSNLKAKDPNIVC 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               +S +K   V     + +    +A  L + +A+ L  G GGG+P MAQ+GG + +K 
Sbjct: 803 FFGNVSNDKIVFVSGAGKDAVSKGVHAGQLVKKAAQ-LCSGNGGGKPDMAQAGGKDISKL 861

Query: 886 DQAIAGVASFL 896
           ++A   + S L
Sbjct: 862 NEAFEAIKSEL 872


>gi|256818974|ref|YP_003140253.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256580557|gb|ACU91692.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 877

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 340/922 (36%), Positives = 504/922 (54%), Gaps = 82/922 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP Y+ V   QK
Sbjct: 6   IREQFLKFFESKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRVADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIPKENLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV++         D+EA+ +WK+   ++ + I+     DNFW M + GPCGPC+EI  D
Sbjct: 126 VTVFEGSEEDGVPFDQEAYDIWKE--RIAENHILLGNKKDNFWEMGDQGPCGPCTEIHVD 183

Query: 179 -QGECIPGGLPGSSEEGERY---IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + +     +PG       Y   IEIWN VFM+F ++       LP  ++DTGMG ER+ 
Sbjct: 184 IRSDEEKAKVPGRDLVNNDYPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------RVIVDHLRSSSFL 285
            VLQ+K +NYD D+F  LI   E++T  +Y   + V           RVI DH+R+ +F 
Sbjct: 244 MVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTAEQEQVNIAIRVISDHIRAVAFA 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG  +PEL + +
Sbjct: 304 ITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPELEKQQ 363

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LI   ++ E+  F +TL++GL++LD V+      + L+G  AF+LYDT+G P D+   I
Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNSPGKQLSGGKAFELYDTYGFPKDLTALI 422

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +GL  +D  SF + L++Q+ R+RA      +      W  L++     +FIGYD L 
Sbjct: 423 LSEKGLT-MDEASFEEQLQKQKERSRA-----AAQIKADDWVILRDD-DEEEFIGYDTLE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + R+V  QK                            G   ++VF+ TPFY E 
Sbjct: 476 AVVRLVKYRRVESQK---------------------------DGTHFQLVFNTTPFYPEG 508

Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G     +G  + I D  KK   + +H  I E             +   +R   
Sbjct: 509 GGQVGDKGTLQSANGELIYILDT-KKENNLIIH--ISEHLPTNLNDPFKAEVHSISREMA 565

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  ELK +E  VN  I
Sbjct: 566 EANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLVNRRI 625

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            + +P+   R +  + A+ SGA AL G KY DRVR+  +++ D    S  LCGGTHV +T
Sbjct: 626 FEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRM--IQFGD----SKELCGGTHVKNT 679

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I+SE ++ AGIRRIEAIT   A  +   Q++ ++ +   LK +Q + V  +  
Sbjct: 680 GDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLKNAQ-DPVKAIRH 738

Query: 763 IWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDAL 816
           + EE    +++L+ +  ++  QL     +  +  +VN +  ++ +VD++   LK +   L
Sbjct: 739 LQEENAALHKELEQLRKEQAKQLKTSIKA--EFTEVNGVQCLVKQVDAEVATLKDLAFEL 796

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
             ++++  I      +E KA +L  + +DL      +A  + R   K +  GGGGG+P  
Sbjct: 797 GNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYI-HGGGGGQPFF 855

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           A +GG N     +A++ V  +L
Sbjct: 856 ATAGGKNPGGITEALSKVKDYL 877


>gi|296270020|ref|YP_003652652.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092807|gb|ADG88759.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 889

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 304/784 (38%), Positives = 446/784 (56%), Gaps = 53/784 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   FL FF++NGH ++PS+SL+   DPTL+  N+GMVPFK  F GQ+KP ++  T++
Sbjct: 4   AEIARRFLRFFEENGHTVVPSASLV-AEDPTLLLVNAGMVPFKPYFLGQQKPPFRRATSL 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D+D VG+T RH +FF+MLGNFSFG YFKE AI  AW+LLT+      F 
Sbjct: 63  QKCVRT----LDIDEVGKTPRHASFFQMLGNFSFGDYFKEGAIPFAWELLTRPVSEGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + RL++TVY +D+EA ++W+K+ G+ A++I R    DN+W M   GP GPCSEI++D+
Sbjct: 119 FPEDRLWVTVYLDDDEAQEIWRKV-GVPAERIQRRGLADNYWHMGVPGPGGPCSEIYYDR 177

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERM 233
           G    G   G   +  RY+E+WNLVFMQ +    + +        LP  +IDTGMGLERM
Sbjct: 178 GPQY-GREGGPIADENRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGLERM 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ID    +I+ + ++T  +Y  +  + +  RV+ DH+R+   L+ DG+L
Sbjct: 237 AAILQGVDNIYEIDTTSKIIKRAAELTETRYGRDERSDICLRVVADHMRAGVMLVGDGVL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEET 350
           P+NEGRGYVLRR++RR +   RLLG  E   M  L A   E M   YPEL   +  I   
Sbjct: 297 PSNEGRGYVLRRMLRRTIRNLRLLGAGEERYMRELTATTIEAMSGLYPELKTEEARIHTV 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + +E+  F  TL  G  + D  ++   +    +L+G+ AF+L+DT+G P+D+  ++   +
Sbjct: 357 IEAEEASFLGTLRTGTAIFDAAVAETKRKGGTVLSGEQAFQLHDTYGFPIDLTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSK 467
           GL  +D   F + ++EQR RA+A +    +G  +   FS + EK G   F+GYD      
Sbjct: 417 GLK-VDEEGFRRLMQEQRERAKADAKAKKTGHADISVFSGILEKAGKIDFVGYDR----- 470

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                            T   +++V  IV  G  V  A  G  +E+V D+TPFYAE GGQ
Sbjct: 471 -----------------TTAEATVVGLIVN-GVSVPAAGEGTSLEIVLDRTPFYAEGGGQ 512

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           L D G     G  +++ DVQ   +G+ VH   V  G +         ID + RR +S +H
Sbjct: 513 LADQGVIRTSGAEIEVLDVQSPIDGLIVHRGKVRSGEVLVGDQAHAEIDVERRRAISRSH 572

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATH++H      LG   +Q GS  +P   RFD T +  +  + L+ +ED VN ++  +L
Sbjct: 573 TATHMVHRGFRNALGESAAQAGSENSPGRFRFDFTSAGAVPPSVLRDVEDEVNAVLINDL 632

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV     ++ +A A GA AL G KY D VRVV V     G +S  LCGGTHV+++G++ L
Sbjct: 633 PVRAFYTSQAEARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVATSGQLGL 687

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + I+ ESS+ AG+RR+EA+ G  A   L  +   +  L+  LK  +  +  R+E I    
Sbjct: 688 IKILGESSVGAGVRRVEALVGLDAFRFLAKESVLVSQLSEQLKARREELPERIEGIVSRL 747

Query: 768 RKLQ 771
           R  +
Sbjct: 748 RAAE 751


>gi|315224360|ref|ZP_07866194.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314945750|gb|EFS97765.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 877

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 339/922 (36%), Positives = 506/922 (54%), Gaps = 82/922 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP Y+ V   QK
Sbjct: 6   IREQFLKFFKSKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRVADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIPKENLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV++         D+EA+ +WK+   ++ + I+     DNFW M + GPCGPC+EI  D
Sbjct: 126 VTVFEGSEEDGVPFDQEAYDIWKE--RIAENHILLGNKKDNFWEMGDQGPCGPCTEIHVD 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + +     +PG    + +  + IEIWN VFM+F ++       LP  ++DTGMG ER+ 
Sbjct: 184 IRSDEEKAKVPGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------RVIVDHLRSSSFL 285
            VLQ+K +NYD D+F  LI   E++T  +Y   + V           RVI DH+R+ +F 
Sbjct: 244 MVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTPEQEQVNIAIRVISDHIRAVAFA 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG  +PEL + +
Sbjct: 304 ITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPELEKQQ 363

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LI   ++ E+  F +TL++GL++LD V+      + L+G  AF+LYDT+G P D+   I
Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNSPGKQLSGGKAFELYDTYGFPKDLTALI 422

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +GL  +D  SF + L++Q+ R+RA      +      W  L++     +FIGYD L 
Sbjct: 423 LSEKGLT-MDEASFEEQLQKQKERSRA-----AAQIKADDWVILRDD-DEEEFIGYDTLE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + R+V  QK                            G   ++VF+ TPFY E 
Sbjct: 476 AVVRLVKYRRVESQK---------------------------DGTHFQLVFNTTPFYPEG 508

Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G     +G  + I D  KK   + +H  I E             +   +R   
Sbjct: 509 GGQVGDKGTLQSANGELIYILDT-KKENNLIIH--ISEHLPTNLNDPFKAEVHSISREMA 565

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  ELK +E  VN  I
Sbjct: 566 EANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLVNRRI 625

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            + +P+   R +  + A+ SGA AL G KY DRVR+  +++ D    S  LCGGTHV +T
Sbjct: 626 FEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRM--IQFGD----SKELCGGTHVKNT 679

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I+SE ++ AGIRRIEAIT   A  +   Q++ ++ +   LK +Q + V  +  
Sbjct: 680 GDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLKNAQ-DPVKAIRH 738

Query: 763 IWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDAL 816
           + EE    +++L+ +  ++  QL     +  +  +VN +  ++ +VD++   LK +   L
Sbjct: 739 LQEENAALHKELEQLRKEQAKQLKTSIKA--EFTEVNGVQCLVKQVDAEVATLKDLAFEL 796

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
             ++++  I      +E KA +L  + +DL      +A  + R   K +  GGGGG+P  
Sbjct: 797 GNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYI-HGGGGGQPFF 855

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           A +GG N     +A++ V  +L
Sbjct: 856 ATAGGKNPGGITEALSKVKDYL 877


>gi|205830104|sp|A8LCW4|SYA_FRASN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 305/771 (39%), Positives = 437/771 (56%), Gaps = 45/771 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G  K  +   T
Sbjct: 2   DTAEIRRRFLNHFSERGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLKAPWNRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQKCVR      D+DNVGRT RH +FF+M GNFSFG YFK  AI  A++L+   +  + 
Sbjct: 61  SVQKCVRT----VDIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFNP 116

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G  
Sbjct: 117 DDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGPA 174

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237
             G   G   + +RY+EIWNLVFMQF +    E        LP  +IDTGMGLERMAT+L
Sbjct: 175 Y-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATIL 233

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N Y+ID+ + ++ A+ ++TG +Y  + ++ V  RV+ DH R+++ LI+DG+ P+NE
Sbjct: 234 QGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSNE 293

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+  ARLLG  EP+M  L   +   MG  YPEL+     I     +E+
Sbjct: 294 GRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAEE 353

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  +
Sbjct: 354 TAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT-V 412

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + +E QR  A+A       G  +   F  +    G T F GY     ++  +E 
Sbjct: 413 DEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGY-----TELGRE- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +G+  IV   +  G+ +  A  G++V ++ D TPFYAE+GGQ  D G
Sbjct: 467 -------------SGIVGIVG--IGDGDSLTAAGEGEEVGILLDATPFYAESGGQEADLG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG   ++ DVQ+    + +H   V  G LR    +   +D + RR +S +H+ATHL
Sbjct: 512 RIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN+I  ++L V   
Sbjct: 572 VHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEVRWY 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + ++E+A   GA AL G KY DRVRVV V     G ++  LCGGTHV+S+ ++  + ++S
Sbjct: 632 VTSQEEARRLGAMALFGEKYGDRVRVVDV-----GDYARELCGGTHVASSAQLGAIKLLS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ESSI AG RR+EA+ G  A   L  +   +  L+S LK     +  RV +I
Sbjct: 687 ESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADI 737


>gi|325282994|ref|YP_004255535.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314803|gb|ADY25918.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 892

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 326/872 (37%), Positives = 480/872 (55%), Gaps = 73/872 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
             + IR  FLEFF    H +LP   ++   DPT MFT +GM  FK  F G      +   
Sbjct: 16  TTADIRRKFLEFFHSKEHLILPGHPVV-APDPTTMFTVAGMQQFKPQFMGAPAVFSEGAS 74

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
           + VTT QKCVR     +D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT   
Sbjct: 75  KRVTTAQKCVRM----DDIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIAWAWEFLTSPE 130

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
               D  R+Y+T+Y +D+EAF+ W +  GL  D I R   ++NFW          GPCGP
Sbjct: 131 WMGFDPERMYVTIYVDDDEAFRYWTEDHGLPKDHIHRFGADENFWPADAPLKGPNGPCGP 190

Query: 172 CSEIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMS 223
           CSEI++D+G             + E  R++E+WNLVF +F++Q   E        LP  +
Sbjct: 191 CSEIYYDRGPKYGDDSWADYAKTRESARFLEVWNLVFPEFDRQGLDESGQPILAPLPFKN 250

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+F  LI    +++G  YEG + V+HRVI +H RS S
Sbjct: 251 IDTGMGLERVASVVQDVPDFYTNDVFAPLIDKIVELSGRPYEGESSVSHRVIAEHARSVS 310

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            +IADG+  +N GRGYV+R+++RRA  +A LLG  EP +  L+P +  +M   YPEL+  
Sbjct: 311 MVIADGVALSNTGRGYVVRKVLRRASRHAYLLGLNEPSIYRLVPLVVEKMKDGYPELVAE 370

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  ++  +R+E+ERF +TL+ G+  L+G+L  LG +++L+G+ AF LYDT+G PLD+ Q+
Sbjct: 371 QERVQAAIRAEEERFLRTLEGGIQRLNGLLEELGSEKVLSGEDAFTLYDTYGFPLDLTQE 430

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G+  +D+  +  ALE  +  ARA S   G            +    T+F+GYD L
Sbjct: 431 IAAEHGV-DVDVTGYELALERAQETARAGS-KFGKSELFDAGAEAVQNLPQTEFVGYDQL 488

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                   + +VL                        +++  V G K  VV  +TPFYAE
Sbjct: 489 ------DAEGEVLA-----------------------VLDSEVEGHKT-VVLSRTPFYAE 518

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GG++GDTG     G   ++ D +K   G+F+H   V RG L ++ + V  +    R  +
Sbjct: 519 GGGEVGDTGRLEWAGGEGRVLDTRKIG-GVFLHEVEVLRGEL-SQGAGVRGVVGAERAAI 576

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +H+ATHLLH AL  +LGS V Q GS + PD LRFD TH+  +++ EL ++E  V+  +
Sbjct: 577 QRHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHTAALSAEELAAVETLVSRWV 636

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHV 699
           + N PV+ + M  E+A A+GA AL G KY D VRVV VE    Y    V S  LCGG HV
Sbjct: 637 SANFPVIWQEMPIEEAKAAGATALFGEKYGDTVRVVRVEGDVDYGGAAVSSMELCGGAHV 696

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG+I    ++S+ ++ AG+RRIEA+ G+ A + +  +  +L   AS L  S   +  R
Sbjct: 697 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATAWVRERLGRLNRTASLLNTSAEGLEDR 756

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVM 813
           +  +  + +  +   A+ + QL    +     AD          S  +S V+  EL+   
Sbjct: 757 IAGLQHQLKASEKEMAQVRAQLAEAQMGGGNSADTRELGGFKVASLKLSGVEGNELRGAA 816

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           D L +  QSG  ++V I+ +K   +++  T+D
Sbjct: 817 DRLLE--QSGADLVV-IASDK--GLVVKATKD 843


>gi|307127048|ref|YP_003879079.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|306484110|gb|ADM90979.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 872

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/925 (37%), Positives = 503/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y  +Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +   I   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|187933980|ref|YP_001885372.1| alanyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|205830030|sp|B2THN0|SYA_CLOBB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187722133|gb|ACD23354.1| alanine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 879

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 319/903 (35%), Positives = 506/903 (56%), Gaps = 46/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  + +R  +L FF+   H  L S SL+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FTKTNDLRDAYLNFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPKKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKCVR G    D+DNVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT   +L
Sbjct: 63  ITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVLEL 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F + 
Sbjct: 119 PKEKLYVTIYLDDDEAYEYWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFSRT 177

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V+Q
Sbjct: 178 DEVPKNSEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296
            K + ++ID  +++++    +  +KY E N I V+ R+I DH+RS +F+I+D I+P+NEG
Sbjct: 238 NKNSIFEIDTLENILKEVGNLASVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  +  + +L   +  +  SAYP+L   K  I++ ++ E++
Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCSSAYPDLEVKKEYIKKVIKIEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD G+ +L+ ++S L    +++L G   FKLYDT G P+++ ++IL   GL+ +D
Sbjct: 358 KFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEGLS-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ ++EQR RAR+         T+     +      T F GY+             
Sbjct: 417 EDGFHEEMKEQRERARSARKTSNYMGTDVKTLDIISSEIETTFDGYE------------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      + + + VK +V   +  +    G    VV D TPFYAE GGQ+GDTG  
Sbjct: 464 ----------NDSLIAEVKTLVNGEDFADSITEGDNAVVVTDVTPFYAEMGGQIGDTGTI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + +I D +K   G  +H      G L+    + L +D   R  +  NH+ATHLL 
Sbjct: 514 YNDNFKGKILDTKKNIGGKIIHFVEAISGELKVGDKVTLEVDNARRENIKKNHTATHLLD 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS ++ D LRFD +H + +   EL  +E  VN+ I    PV T  M
Sbjct: 574 SALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTTEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  +   KY ++VRVV       G +S  LCGGTH+ +TG+I L  I+SE+
Sbjct: 634 DLQEAKNSGAVGIFDDKYAEKVRVVC-----AGEYSKELCGGTHIDNTGKIGLFKIISEN 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKL 770
            I AG RRIEA+TG  A   +  + E LK ++  LK S+  +  ++++    + E+ +++
Sbjct: 689 GIAAGTRRIEAVTGMEAYKLVNEKAELLKQISGKLKCSEKEITSKLDQQSKEMKEKEKEI 748

Query: 771 QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            ++ +K   +++N    S   +  +N +++ + +VD + L+ + + ++  + + + +L  
Sbjct: 749 TILKSKFASMEINDIINSAKDVKGINIVAYALKDVDGEALRGLCEKVRDNVNNSLTLLTS 808

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S + K  +  +  ++ + +             + GGGGGGRP MAQ+GG    K  +A+
Sbjct: 809 -SVDGKVVICAMADKEAVSKGAHCGKVIKEVATILGGGGGGRPDMAQAGGKLPEKISEAL 867

Query: 890 AGV 892
             V
Sbjct: 868 DSV 870


>gi|158313530|ref|YP_001506038.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158108935|gb|ABW11132.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 892

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 305/771 (39%), Positives = 437/771 (56%), Gaps = 45/771 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G  K  +   T
Sbjct: 14  DTAEIRRRFLNHFSERGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLKAPWNRAT 72

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQKCVR      D+DNVGRT RH +FF+M GNFSFG YFK  AI  A++L+   +  + 
Sbjct: 73  SVQKCVRT----VDIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFNP 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G  
Sbjct: 129 DDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGPA 186

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237
             G   G   + +RY+EIWNLVFMQF +    E        LP  +IDTGMGLERMAT+L
Sbjct: 187 Y-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATIL 245

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N Y+ID+ + ++ A+ ++TG +Y  + ++ V  RV+ DH R+++ LI+DG+ P+NE
Sbjct: 246 QGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSNE 305

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+  ARLLG  EP+M  L   +   MG  YPEL+     I     +E+
Sbjct: 306 GRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAEE 365

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  +
Sbjct: 366 TAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT-V 424

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + +E QR  A+A       G  +   F  +    G T F GY     ++  +E 
Sbjct: 425 DEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGY-----TELGRE- 478

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +G+  IV   +  G+ +  A  G++V ++ D TPFYAE+GGQ  D G
Sbjct: 479 -------------SGIVGIVG--IGDGDSLTAAGEGEEVGILLDATPFYAESGGQEADLG 523

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG   ++ DVQ+    + +H   V  G LR    +   +D + RR +S +H+ATHL
Sbjct: 524 RIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTATHL 583

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN+I  ++L V   
Sbjct: 584 VHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEVRWY 643

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           + ++E+A   GA AL G KY DRVRVV V     G ++  LCGGTHV+S+ ++  + ++S
Sbjct: 644 VTSQEEARRLGAMALFGEKYGDRVRVVDV-----GDYARELCGGTHVASSAQLGAIKLLS 698

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ESSI AG RR+EA+ G  A   L  +   +  L+S LK     +  RV +I
Sbjct: 699 ESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADI 749


>gi|319947341|ref|ZP_08021574.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319746583|gb|EFV98843.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 872

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 345/927 (37%), Positives = 506/927 (54%), Gaps = 86/927 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y  D +++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPADTDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +TP
Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498

Query: 520 FYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G    A G+ +   +TDVQK   G  +H   V    L       L ID
Sbjct: 499 FYAEMGGQVADHGQILDATGN-VVATVTDVQKAPNGQALHTVEV-HAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHKIADVNFMSHIISEV---DSKEL 809
           V  +VE + E+ R+LQ  +A+ K +       D+  H + + N   +I S+V   D+  L
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAVAGDVFKH-VQEANGHRYIASQVSVSDAGAL 790

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           ++  D  ++K  S +++LV    +K   ++   T+D+    +A +L +  A ++  G GG
Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGG 845

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+P MA +GG N  K  + +  VA  L
Sbjct: 846 GKPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|256852223|ref|ZP_05557609.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260661745|ref|ZP_05862656.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|297205611|ref|ZP_06923007.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256615269|gb|EEU20460.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260547492|gb|EEX23471.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|297150189|gb|EFH30486.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 878

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 337/926 (36%), Positives = 521/926 (56%), Gaps = 86/926 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  + +T+ 
Sbjct: 7   SEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   LD+
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +L+ TVY +D ++ K+W+K +G+  D II++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 123 DKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      E    P  +IDTGMGLER+ +
Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I  +E+++ G KY  N  + +  ++I DH+R+ SF I DG LP
Sbjct: 237 ILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I++ ++
Sbjct: 297 SNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKVIK 356

Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RFG TL+ GL LLD ++  +    D+ ++G  AFKL+DT+G P ++  +    +GL
Sbjct: 357 NEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F++ ++ Q+ RAR                   +  G  Q +G          +
Sbjct: 417 K-VDKAGFDKEMDAQKERAR-------------------KARGDLQSMG----------R 446

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
           +D  ++  K   +   GV     A    IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 447 QDETLMNIKDKSEFEYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQN 579
           Q+ D G      GD +  ++TDVQ       +H       +E+G        VL ID   
Sbjct: 506 QVADHGDIYDQNGD-LVAKVTDVQHAPNDQNLHFVDLVLPMEKG-----KEYVLKIDAHR 559

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  L  +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  V
Sbjct: 560 REGLRHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLV 619

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I +N+ V T I + E     GA AL   KY D+VRVV +        S   CGGTH 
Sbjct: 620 NQKIWENIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHC 674

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
           S+T +I +  I+SE +I AG+RRIEA+T ++A  +L  +D  L+ +   +K ++  ++  
Sbjct: 675 SNTAQIGIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKT 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVM 813
           ++  + EE    Q   A+ + ++N    S     + +VN +  I +  D     +L+ + 
Sbjct: 735 KITSLEEELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELA 794

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           D  +   +S +++L   + + KA+++I + +  LD+   A +L +++A V  GGGGGGRP
Sbjct: 795 DNWKASNKSDVLVL-ACANDGKANMVISLADAALDKGLKAGNLIKVAAPVF-GGGGGGRP 852

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
           +MAQ+GG N     +AI  V + + K
Sbjct: 853 NMAQAGGKNPAGLKEAITAVINEINK 878


>gi|319939471|ref|ZP_08013831.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811457|gb|EFW07752.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 872

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 338/915 (36%), Positives = 502/915 (54%), Gaps = 92/915 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D +++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWISV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPEHQGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y  +G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G      ++  L +    +++G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAQSIVEELKEKGQSVISGTDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I         A     
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASVVKGGSMGMQNETLQNI--------TAESHFN 462

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y+                          +S+ + AIV   + VEE  SG K  +VF +TP
Sbjct: 463 YE-----------------------KEALSAKLVAIVADDKEVEEVTSG-KAYLVFAETP 498

Query: 520 FYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G    +   +  Q+ DVQK   G  +H   V    L       L ID+
Sbjct: 499 FYAEMGGQVADHGQIFDLAGNLVAQVVDVQKAPNGQPLHTVEV-VAPLALNQEYKLEIDH 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  +LG H +Q GS    + LRFD TH + +T+ EL+ IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + + + T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 EVNEKIWEAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ +T EI L  IV E  I +G RRI A+T + A      +++ LK++A+ LKV Q   V
Sbjct: 673 HMKNTSEIGLFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDALKAIATTLKVPQMKEV 732

Query: 758 GR-VEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDS 806
            R VE + E+ R+LQ  +A+ K +           NV++ + H     +F++  +S  D+
Sbjct: 733 SRKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSDA 787

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             L++  D  ++K  S +++LV    EK   ++   T+D+    +A +L +  A ++  G
Sbjct: 788 GALRTFADTWKQKDYSDVLVLVAAIGEKVNVLVASKTKDI----HAGNLIKELAPIV-AG 842

Query: 867 GGGGRPHMAQSGGPN 881
            GGG+P MA +GG N
Sbjct: 843 RGGGKPDMAMAGGSN 857


>gi|148997564|ref|ZP_01825169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|168575843|ref|ZP_02721758.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|194397245|ref|YP_002038030.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|307068035|ref|YP_003877001.1| alanyl-tRNa synthetase [Streptococcus pneumoniae AP200]
 gi|147756619|gb|EDK63660.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|183578173|gb|EDT98701.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|194356912|gb|ACF55360.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|306409572|gb|ADM84999.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae AP200]
          Length = 872

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 343/925 (37%), Positives = 505/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K              +VN   +I S++   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQLSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGRNQAKIQELLDAVAGKL 872


>gi|311113673|ref|YP_003984895.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310945167|gb|ADP41461.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 893

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 333/921 (36%), Positives = 503/921 (54%), Gaps = 75/921 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   ++EFF+K GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQK
Sbjct: 6   ISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT   D     LD
Sbjct: 65  CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDKGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++T+Y+ D EAF +W K  G   ++I R+   +N+WS  + GP GP SEIF+D+G 
Sbjct: 121 PERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGLERMAT 235
              G   G + + +RYIEIWNLVFMQ+++     +E F     LPK +IDTG+G+ER+A 
Sbjct: 181 AY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGVERLAM 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286
           +LQ   N Y+ D  + ++ A+ +++G KY G+         + V  RV+ DH+RSS  LI
Sbjct: 240 LLQGVENFYETDQVRPVLDAASKLSGKKYHGSESPEDPGYEDDVRMRVVADHIRSSLMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +      
Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVADDFER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F  T++ G   L+  ++   KD    ++G  AF L+DT+G P+D+  ++
Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVATAKKDGSNSVSGAEAFALHDTYGFPIDLTLEM 419

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYGATQFIGYDLL 463
               G+  +D  +F + + EQR RA+A +    GS         L ++ G+  F GY  L
Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGSFADLSELRKLVDERGSI-FTGYTEL 477

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                         + ++A+++ G  V  A +G K+EVV D+TPFYAE
Sbjct: 478 R-----------------------TETHLRALLKDGVSVPVAKAGDKIEVVLDETPFYAE 514

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G       +V  +D Q RR  
Sbjct: 515 GGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQRRRDG 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  N  I
Sbjct: 575 EKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVANLAI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V+ R M   +A A GA +L G KY + VR+V +    GG  S  LCGGTHV ++ 
Sbjct: 635 RDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHVGTSS 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------N 755
           EI  L +++E S+ +G RR+EA+ G  +  HL  +   +  L   +KV            
Sbjct: 691 EIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPEKINQ 750

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVM 813
            + +++   +E  KL+    + KLQ     L  +   I  V  ++H   E+D+  ++S+ 
Sbjct: 751 TLAKLKSAEKELEKLR----REKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLA 806

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGR 871
             L+ +  S   ++          V++V T +        A  L RL+A +L GGGGGG+
Sbjct: 807 LDLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAAGIL-GGGGGGK 865

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
             +AQ GG + +K  +A+  +
Sbjct: 866 DDVAQGGGQDASKVSEALDAI 886


>gi|282932649|ref|ZP_06338063.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|281303223|gb|EFA95411.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 878

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 337/926 (36%), Positives = 521/926 (56%), Gaps = 86/926 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  + +T+ 
Sbjct: 7   SEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   LD+
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +L+ TVY +D ++ K+W+K +G+  D II++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 123 DKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      E    P  +IDTGMGLER+ +
Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I  +E+++ G KY  N  + +  ++I DH+R+ SF I DG LP
Sbjct: 237 ILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I++ ++
Sbjct: 297 SNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKVIK 356

Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RFG TL+ GL LLD ++  +    D+ ++G  AFKL+DT+G P ++  +    +GL
Sbjct: 357 NEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F++ ++ Q+ RAR                   +  G  Q +G          +
Sbjct: 417 K-VDKAGFDKEMDAQKERAR-------------------KARGDLQSMG----------R 446

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
           +D  ++  K   +   GV     A    IV   ++V++A  G+   ++FD+TPFYAE GG
Sbjct: 447 QDETLMNIKDKSEFEYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505

Query: 527 QLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQN 579
           Q+ D G      GD +  ++TDVQ       +H       +E+G        VL ID   
Sbjct: 506 QVADHGDIYDQNGD-LVAKVTDVQHAPNDQNLHFVDLVLPMEKG-----KEYVLKIDAHR 559

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  L  +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  V
Sbjct: 560 REGLCHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLV 619

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I +N+ V T I + E     GA AL   KY D+VRVV +        S   CGGTH 
Sbjct: 620 NQKIWENIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHC 674

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
           S+T +I +  I+SE +I AG+RRIEA+T ++A  +L  +D  L+ +   +K ++  ++  
Sbjct: 675 SNTAQIGIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKT 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVM 813
           ++  + EE    Q   A+ + ++N    S     + +VN +  I +  D     +L+ + 
Sbjct: 735 KITSLEEELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELA 794

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           D  +   +S +++L   + + KA+++I + +  LD+   A +L +++A V  GGGGGGRP
Sbjct: 795 DNWKASNKSDVLVL-ACANDGKANMVISLADAALDKGLKAGNLIKVAAPVF-GGGGGGRP 852

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
           +MAQ+GG N     +AI  V + + K
Sbjct: 853 NMAQAGGKNPAGLKEAITAVINEINK 878


>gi|239939940|ref|ZP_04691877.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 868

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 343/909 (37%), Positives = 504/909 (55%), Gaps = 76/909 (8%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+VQKCVR      D++ VG+
Sbjct: 1   MPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSVQKCVRT----PDIEEVGK 55

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137
           T RH TFF+M GNFSFG YFKE AIQLAW+ LT       + LD  +L+ITVY +D+EA 
Sbjct: 56  TTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYGLDPEKLWITVYLDDDEAE 115

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
           ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI +D+G    G   G +   ERY
Sbjct: 116 QIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDRGPEF-GVEGGPAVNDERY 174

Query: 198 IEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           +EIWNLVFMQ+E+   + +E F     LP  +IDTG+GLER+A +LQ   N Y+ D  + 
Sbjct: 175 VEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERLAMILQGVQNMYETDTLRV 234

Query: 252 LIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           ++  + ++TG++Y  E    V+ RV+ DH+R+S  LI DG+ P NEGRGYVLRRIMRRA+
Sbjct: 235 VMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGDGVTPGNEGRGYVLRRIMRRAI 294

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              RLLG T  ++  L+  +   MG  YPELI  +  IE    +E+  F K L  G  +L
Sbjct: 295 RNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVALAEEAAFLKALKGGTNIL 354

Query: 370 DGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           +  ++       ++L GD AF L+DT G P+D+  ++   +GL+ +D   F + ++EQR 
Sbjct: 355 ETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQGLS-VDEDGFRRLMQEQRD 413

Query: 428 RARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
           +A+A +    +G  +   +  + +  GAT+F GY  L G                     
Sbjct: 414 KAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAGE-------------------- 453

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITD 545
             S+IV  +V  G     A  G +VEVV D+TPFYAE GGQL DTG   +  G  +++ D
Sbjct: 454 --STIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQLADTGRIRLDTGAVIEVRD 510

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK   G+ VH  +V+ G +     +  +ID   RR ++  HSATHL H AL   LG   
Sbjct: 511 VQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAHSATHLTHQALRDALGPTA 570

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS  +P   RFD      +    L  +E  +N+++++ L V   +M+ ++A   GA 
Sbjct: 571 AQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSRELDVQAEVMSIDEAKKQGAI 630

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L+ ++ ESSI +G+RRIEA
Sbjct: 631 AEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGLVKLLGESSIGSGVRRIEA 685

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQ--- 780
           + G  A + L  +   +  L   +K       GR EE+ E+   +  +L  A+++++   
Sbjct: 686 LVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKIAGMLGKLKDAEKEIEKFR 738

Query: 781 ----LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGISK 832
               L           DV  ++ +  +V     + +L+ ++  ++ +IQ G   +V +  
Sbjct: 739 AEKVLAAAAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRGRIQGGRPAVVALFT 798

Query: 833 EKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                 L V+  +   R     A DL R +AK L GGGGGG+P +AQ GG N      A+
Sbjct: 799 TANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGKPDVAQGGGTNPAAIGDAV 857

Query: 890 AGVASFLKK 898
           A V   + +
Sbjct: 858 AAVERLVSE 866


>gi|225859149|ref|YP_002740659.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225720312|gb|ACO16166.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 872

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 343/925 (37%), Positives = 503/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y  +Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +   I   +T+VQK   G  +H   V    L      +L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYILAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|323352646|ref|ZP_08087616.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322121682|gb|EFX93428.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 872

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 346/932 (37%), Positives = 514/932 (55%), Gaps = 96/932 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G    + +++ L   G++ I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           PFYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L I
Sbjct: 498 PFYAEMGGQVADHG-QIFDGAGKLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEI 555

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D+  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++I
Sbjct: 556 DHSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAI 615

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCG
Sbjct: 616 EQEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCG 670

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754
           GTHV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q  
Sbjct: 671 GTHVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIK 730

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEV 804
            V  +VE + E+ R+LQ  +A+ K +           +V++ + H+     F++  +S  
Sbjct: 731 EVPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQEANGHR-----FIASQVSVS 785

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           D+  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++ 
Sbjct: 786 DAGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV- 840

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+P MA +GG   +     +A VA  L
Sbjct: 841 DGRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|167753580|ref|ZP_02425707.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216]
 gi|167658205|gb|EDS02335.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216]
          Length = 847

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 331/888 (37%), Positives = 497/888 (55%), Gaps = 79/888 (8%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++  NDPTLMFTN+GM  FK+IF G     Y      QKC+R  GKHNDL+ VG    HH
Sbjct: 1   MVVKNDPTLMFTNAGMNQFKDIFLGNIPRPYPRAADTQKCLRVSGKHNDLEEVGHDTYHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKL 139
           T FEMLGN+SFG YFK+ AI  AW+LLT  + LD+ R+Y TV++         D+EA+ +
Sbjct: 61  TMFEMLGNWSFGDYFKKEAIGWAWELLTGVYGLDKSRMYATVFEGSPEDGVPFDQEAYDI 120

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPGS---SEEGE 195
           W  +  L AD IIR   +DNFW M + GPCGPCSEI +D + E     +PG    ++   
Sbjct: 121 W--LQYLPADHIIRGNKHDNFWEMGDVGPCGPCSEIHYDLRDESEIAAVPGREMVNQGSP 178

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
             IEIWNLVFMQF ++       L    IDTGMG ER+  +LQ K +NYD D+F+  IQ 
Sbjct: 179 LVIEIWNLVFMQFNRKANGSLEPLAANCIDTGMGFERLCMILQGKKSNYDTDVFQPTIQR 238

Query: 256 SEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA- 312
              ++G  Y  +    V  RV+ DHLR+ SF IADG LP+N   GYV+RRI+RRA+ Y  
Sbjct: 239 IAAMSGKTYGADEKCDVAMRVVADHLRAISFSIADGQLPSNVKAGYVIRRILRRAVRYGY 298

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             LG+ EP +  L+  L  +MG  +PEL   + LIE+ +  E+  F +TL  G+ LLDGV
Sbjct: 299 TYLGFNEPFICRLVAGLVDQMGGQFPELKAQQTLIEKVIEEEESSFLRTLATGINLLDGV 358

Query: 373 LSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           ++ + K   E ++G  AF LYDT+G P+D+ + I   +G+  +D+ +F + L+ Q+ R+R
Sbjct: 359 MAEVRKSGGERISGKDAFLLYDTYGFPIDLTELIAREQGIE-VDLEAFEKELQAQKERSR 417

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                  +      W  L      ++FIGYD L     +   R+V               
Sbjct: 418 N-----AAAVDTDDWKELIH-IKQSEFIGYDTLSAEVKIARYRRV--------------- 456

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                  +G +          ++VFD+TPFY  +GGQ+GD G       R+ +   +K+ 
Sbjct: 457 -----SSKGRV--------SYQLVFDRTPFYGNSGGQIGDIGYIETANERIPVVATEKE- 502

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G+ +H  IV +     E + +  +D + R+  + NH+ATHL+H AL  +LG+HV Q GS
Sbjct: 503 NGLIIH--IVTQLPENPEATFMAVVDPEKRQAAANNHTATHLMHEALRKVLGTHVEQKGS 560

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLG 669
            +TP+ LRFD +H + +T  EL+ +E  VN  I  N P+   R   +E+A A+GA  L G
Sbjct: 561 LVTPEYLRFDFSHFQKVTHEELRRVEQLVNRAIRANYPLEEKRDATKEEAAAAGAMMLFG 620

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY DRVR+V          S  LCGGTHVS+TG I    I++ES+I AG+RRIEA TG 
Sbjct: 621 EKYGDRVRMVRFG------TSVELCGGTHVSATGNIGFFKILNESAISAGVRRIEATTGA 674

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSC 788
           +A   +   ++ ++++A +L   Q  ++  +++I E    L+  + A R+ Q  V + + 
Sbjct: 675 KAEEVIYAAEDTMRNVADYLNNPQ--ILQSIKKIMESNEALKHEMEAIRREQ--VAEWAA 730

Query: 789 HKIADVNF----MSHIISEVDSKE--LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            KI D       M  + ++ D +   +K +  A++ + ++ I++++G   + K ++ + +
Sbjct: 731 -KIVDSTPERGGMRLMATQTDRRPDFIKDLAFAVRSRSKN-IVLVIGSINDGKPTLTVAL 788

Query: 843 TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +D++ +  NA  + R +AK +  GGGGG+P +A +GG N +    AI
Sbjct: 789 GDDIVAQGVNAGVVVREAAKAI-NGGGGGQPFLATAGGKNPDGIQAAI 835


>gi|323465940|gb|ADX69627.1| Alanyl-tRNA synthetase [Lactobacillus helveticus H10]
          Length = 894

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 346/929 (37%), Positives = 518/929 (55%), Gaps = 92/929 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 22  SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 81

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L +
Sbjct: 82  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 137

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 138 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 193

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 194 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 251

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG LP
Sbjct: 252 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 311

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  ++
Sbjct: 312 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENVIQ 371

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TLD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     GL
Sbjct: 372 NEEERFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 431

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F+  ++ Q+ RAR     L S G  +    ++K+K              S F 
Sbjct: 432 K-VDKKGFDAEMQAQKERARKARGALQSMGRQDVTLMNIKDK--------------SVFE 476

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           ++      ++P   L +        IV   ++V++A  G+   +VFD+TPFYAE GGQ+ 
Sbjct: 477 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 523

Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585
           D G     DG +  ++TDVQ       +H   +   IL  E     VL ID + R  L  
Sbjct: 524 DHGNIYDQDGELVAKVTDVQHAPNDQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 580

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 581 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 640

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T I   E+    GA AL   KY  +VRVV +     G  SS  CGGTH S+T +I
Sbjct: 641 AIDVKTTITTPEEGEKMGALALFDGKYGHKVRVVQM-----GDFSSEFCGGTHCSNTNQI 695

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K ++  N++ +++ + 
Sbjct: 696 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPNNIIDKIDSLE 755

Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810
            +    Q        Q+N               DL+    +ADVN M+         +L+
Sbjct: 756 SDLHDCQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 806

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + D  +   +S +++L     + KA+++I + +  LD+   A DL + +A +  GGGGG
Sbjct: 807 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIF-GGGGG 864

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP+MAQ+GG      + AI  V   + K
Sbjct: 865 GRPNMAQAGGKKPEGLNDAIKAVIEEISK 893


>gi|256391573|ref|YP_003113137.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357799|gb|ACU71296.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 889

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 304/786 (38%), Positives = 447/786 (56%), Gaps = 57/786 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L+FFQK GH ++PS+SLI  NDPT + T +GM PFK  F G++   +   T+V
Sbjct: 4   AEIHRRWLDFFQKKGHTVVPSASLI-SNDPTTLLTIAGMAPFKPYFLGEQPAPWPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH +FF+M GNFSFG YFKE AI +AW+L T       F 
Sbjct: 63  QKCVRT----LDIEEVGKTTRHGSFFQMCGNFSFGDYFKETAIPMAWELCTTPVSEGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  ++++TVY +D+EA ++WKK +G  A++I R+   +N+WSM   GPCGPCSE+F+D+
Sbjct: 119 LDPEKIWVTVYLDDDEAEEIWKK-AGFPAERIQRLGMKENYWSMGVPGPCGPCSELFYDR 177

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER--FI----LPKMSIDTGMGLERM 233
           G    G   G +   ERY+E WNLVFMQFE+    ++  F     LP  SIDTG+GLER+
Sbjct: 178 GPEF-GEAGGPAVNDERYMEFWNLVFMQFERGAGGDKGGFPILGELPSKSIDTGLGLERL 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           AT+LQ   N Y+ID  + ++  +  + G+ Y  +    V+ RV+ DH+++++ +I DGI 
Sbjct: 237 ATILQGVNNLYEIDTSRAILDKAASIAGVTYGRDTRTDVSLRVVTDHVKTATMMIGDGIT 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR+MRRA+   RLLG     +  L+      MG AYPELI     I    
Sbjct: 297 PGNEGRGYVLRRLMRRAIRNMRLLGAHGATIKDLVEITIGAMGQAYPELIADASRIVAVA 356

Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  + + V   +      + +GD AFKL+DT G P+D+  ++    G
Sbjct: 357 VAEETSFLQTLRTGSAMFETVADEAKASGSAVFSGDQAFKLHDTFGFPIDLTLEMASEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L+ +D   F + ++EQR +A+A +    +G  +   +  L +  G + F GY        
Sbjct: 417 LS-VDEEGFRRLMKEQRDQAKADARAKKTGHADMSAYRELLDAAGPSAFTGY-------- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSS--IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            + VSS  ++KA++  G++   A  G +VE+V D+TPFYAE GG
Sbjct: 468 -----------------HEVSSEGLLKAMLVNGQVGSSAKPGDEVELVLDRTPFYAEGGG 510

Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G   +G+G   ++ DVQK    +  H AIV  G +         +D   R  +S 
Sbjct: 511 QLADHGLIRLGNGALAEVVDVQKPVGDLIAHRAIVRDGEVVLGAEAWGEVDTARRAAISR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ATH++H A   +LG   +Q GS  +P   RFD      +  + L  +E  VN+++  
Sbjct: 571 AHTATHMVHKAFRELLGETATQAGSENSPGRFRFDFASPGAVPHSVLADVEQRVNELLID 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V  ++M++ +A A GA AL G KY DRVRVVSV     G  +  LCGGTHV +TG +
Sbjct: 631 DLSVTAQVMSQPEAKAMGAMALFGEKYGDRVRVVSV-----GEWAHELCGGTHVDNTGRL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ ++SESSI +G+RR+EA+ G  A + L  +   +  LA  +K     +V RV  I  
Sbjct: 686 GLVKLLSESSIGSGVRRVEALVGTDAYNFLAREHVLVSQLAEVVKARPEELVERVGGIMT 745

Query: 766 EYRKLQ 771
           + R  +
Sbjct: 746 KLRDAE 751


>gi|148993058|ref|ZP_01822652.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168489547|ref|ZP_02713746.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147928259|gb|EDK79276.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183571933|gb|EDT92461.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332073690|gb|EGI84169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 872

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 343/925 (37%), Positives = 503/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+ +  +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDSSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y  +Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +   I   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|317505218|ref|ZP_07963150.1| alanine--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315663647|gb|EFV03382.1| alanine--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 916

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 332/925 (35%), Positives = 497/925 (53%), Gaps = 99/925 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R +F +FF+   H+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P  + 
Sbjct: 30  MMTANEVRESFKKFFESKEHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KD 88

Query: 61  VTTV--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           V  V  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L    
Sbjct: 89  VRRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDFAWEYLVDVL 148

Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L+   LY+TV++         D+EA   W K   + AD II    +DNFW M +TGPCG
Sbjct: 149 HLNPEDLYVTVFEGAPEEGLKRDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCG 206

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PC+EI  D +       LPG    +++  + IEIWN+VFMQF ++       LP   IDT
Sbjct: 207 PCTEIHVDSRTPEEKAKLPGRELVNKDNPQVIEIWNIVFMQFNRKADGSLEPLPMHVIDT 266

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVN 271
           GMG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      + 
Sbjct: 267 GMGFERLVRMLQDKHSNYDTDIFQPVIKQIELLSGKKYGFTTPTGENGEGKDEQEKIDIA 326

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  L+P L 
Sbjct: 327 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLVPVLV 386

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387
            EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L   GK E L+G  A
Sbjct: 387 QEMGEAYPELSAQQELISRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTE-LDGTSA 445

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F+L+DT+G PLD+ + ++C      +D   F++ + +Q++RAR ++  + +G  E +   
Sbjct: 446 FRLFDTYGFPLDLTE-LICREHGYTVDEKGFDEEMAKQKARAR-NAAAVENGDWEVV--- 500

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
              + G   F+GYD    +  +   RKV  +K                            
Sbjct: 501 ---RDGEQVFVGYDYTEYTCHILRYRKVTQKKNTF------------------------- 532

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               E+V D TPFY E GGQ+GD G  +     + I D  K+     +H  IV+      
Sbjct: 533 ---YEIVLDYTPFYGEMGGQVGDQGTLVSANETINIVDT-KRENNQSIH--IVKELPKDI 586

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E   +  +D + R   + NH+ATHLL +AL  ILG HV Q GS + P  LRFD +H + +
Sbjct: 587 EAEFMACVDVEKRNGSAANHTATHLLDYALKQILGDHVEQKGSYVDPTTLRFDFSHFQKV 646

Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +  +L+ +E  VN +I ++ P+   R    E+A   GA AL G KY D+VRVV       
Sbjct: 647 SDEQLRQVERLVNKMIREDYPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFG---- 702

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S   CGG H  STG+I    I+SESS+ AGIRRIEA+TG      +    + +  L 
Sbjct: 703 --PSCEFCGGIHAKSTGQIGFFKIISESSVAAGIRRIEALTGVACEDTIYALQDTMNDLK 760

Query: 747 SF------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           S       LK +    +G  +E+ +E  K Q    +R     V+D    +  +VN +  I
Sbjct: 761 SMFNNAKDLKATLLKFIGEHDEMRKEIEKFQAQAVER-----VKDELLKRAQNVNGVQVI 815

Query: 801 --ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLA 856
             +  ++    K +   L++ +   ++ ++G +   K  + ++ ++D++  +  NA  + 
Sbjct: 816 KAVLPLEPAAAKDLAFKLRETLNEKLVAVIGSTAGDKPLLTVMFSDDMVKDYALNAGKII 875

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881
           R +AK++  GGGGG+PH AQ+GG N
Sbjct: 876 REAAKLI-QGGGGGQPHYAQAGGKN 899


>gi|188995245|ref|YP_001929497.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|188594925|dbj|BAG33900.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 876

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 337/922 (36%), Positives = 503/922 (54%), Gaps = 90/922 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF   GH+++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  
Sbjct: 1   MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY TV+        D D+EA   W +   L  ++II    +DNFW M +TGPCGPC
Sbjct: 121 DPQRLYATVFEGSPEEGLDRDDEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      GL   ++   + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADSSLTPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI A   +TG+ Y  +  + +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIHALATMTGIGYGEDSASDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELI 341
            DG LP+N   GYV+RRI+RRA+ Y    GYT     E  M  LLP L   MG AYPEL 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRY----GYTFLHCREAFMYRLLPTLIDTMGDAYPELQ 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
             + LI   ++ E+E F +TL+ G+ LL+  ++        +L+G  AF+LYDT G PLD
Sbjct: 355 AQRELISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLD 414

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL   G+  +D   F+  +++Q+ RAR ++  + +G     W  L+E  G ++F G
Sbjct: 415 LTALILSENGMT-VDESGFDTEMQKQKERAR-NAAAVEAGD----WVVLRE--GESKFSG 466

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD      F + + ++L                + + Q+ +        +  +VV   TP
Sbjct: 467 YD------FTETETEILR--------------YRQVKQKNK--------EYFQVVLLDTP 498

Query: 520 FYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQ+GD+G  I + G+   I D  K+   + VH  ++++    T  + V  I+  
Sbjct: 499 FYAEMGGQVGDSGQLIDESGVAYDIFDT-KRENNLSVH--LMKKLPESTTDTFVARINQD 555

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            RRQ   NH+ATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   ++  E++ +E+ 
Sbjct: 556 KRRQAEANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEEL 615

Query: 639 VNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V++ I  +      R +   +A A GA AL G KY + VRV+          S  LCGGT
Sbjct: 616 VSERIRADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYG------SSVELCGGT 669

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ STG I    IV+ESSI +G+RRIEA+TG  A   +  +++ L ++      +  N++
Sbjct: 670 HIPSTGMIGTFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFN-NNPNLI 728

Query: 758 GRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKEL 809
             ++++ EE   L  Q+   K +  L  +     +  DV       F+   I E ++   
Sbjct: 729 KSIKKMLEEDASLKKQIADMKHERMLKFKKSLLEQ--DVRRRGIRLFLFQEIMEAETA-- 784

Query: 810 KSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           K +   +  ++Q   +++ G ++  +K ++ +++++DL +   +A  L R +AK +  GG
Sbjct: 785 KDIAFQIAGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHI-QGG 843

Query: 868 GGGRPHMAQSGGPNGNKADQAI 889
           GGG+PH A +GG N      AI
Sbjct: 844 GGGQPHFATAGGKNPKGLPAAI 865


>gi|258645603|ref|ZP_05733072.1| alanine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402961|gb|EEW96508.1| alanine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 868

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 344/907 (37%), Positives = 502/907 (55%), Gaps = 75/907 (8%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    VTT
Sbjct: 4   NDIREAYLSFFETKKEHLRLKSFPLIPKDDPSLLLIGAGMAPLKPYFTGKVEPPCHRVTT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   L+  
Sbjct: 64  SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWEFLTEVIKLESS 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T+Y +D E++  W  + GL    I  ++  DNFW + E GPCGP SEIF+DQGE  
Sbjct: 120 RLYVTIYPDDRESYDYWHDMIGLPESHIYPLS--DNFWEIGE-GPCGPDSEIFYDQGEEF 176

Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            G  P +    +G+R++EIWNLVF QF+QQ       L K +IDTG GLER++ VLQ+K 
Sbjct: 177 -GTDPENQMGGDGDRFLEIWNLVFSQFDQQKDGSYRPLDKKNIDTGAGLERLSAVLQKKK 235

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NN++ DLF  +IQ +  + G+ Y     + V  +VI DH R+ + +IADGILP+NEGRGY
Sbjct: 236 NNFETDLFFPIIQEAAGLAGVPYGRSTESDVALKVISDHTRAITNMIADGILPSNEGRGY 295

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ Y +L+G  +  +  ++  +   M  AYPEL++ +  I++    E+ RF 
Sbjct: 296 VLRRVLRRAVRYGKLIGIDDAFLGRMIDVVVKMMKPAYPELMEKQAFIKKVAGVEENRFH 355

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+ G+ LL  +L    K +  IL GD  FKLYDT+G P ++ ++I   +G+  ID   
Sbjct: 356 ATLNAGMDLLAEMLEETLKKQRRILTGDRVFKLYDTYGFPWELTEEIAKEQGIE-IDKDG 414

Query: 418 FNQALEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           F  A+ EQ+ RARA     S  + +  T K                   L+      ED 
Sbjct: 415 FAAAMAEQKERARAARTKVSARIATPDTTK-------------------LKSESMTTED- 454

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T+G + I+  + + G+ V+ A  G+ + V+    PF+AE GGQ+GD+G 
Sbjct: 455 -----------TDGDTEIL-LLGKDGQAVQSAADGENITVILKNNPFHAEGGGQIGDSGV 502

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+   + I D +K  +GI      V  G++ T  ++   +D + R  ++ NH+ THLL
Sbjct: 503 LEGNSGIISIEDTKKLPDGIVYCIGTVTEGVISTGETVKTVVDRERREDIARNHTGTHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LGS V+Q GS + P+ LRFD T  + +T  ++  +E  VN+ I ++  +    
Sbjct: 563 QAALRRVLGSQVNQAGSLVLPEKLRFDFTWPEAVTDKQIAEVERIVNEQIWKSTTLDIDE 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M    A   GA AL G KY + VRVV V        S+ LCGG+HV +TGEI    I+SE
Sbjct: 623 MPIAKAKEMGAIALFGEKYGNIVRVVRVPD-----FSTELCGGSHVFNTGEIGCFRIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-----------E 762
           S I +GIRRIEAITG+ A   ++   + L+  A+ LKV    + G++E           E
Sbjct: 678 SGIGSGIRRIEAITGKAAYESMLADRKLLRESAALLKVKVEEIPGKIEKNLAALKEAERE 737

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           I E ++  Q   A   L  NV + +      ++F   I+   +  EL+   D ++ K   
Sbjct: 738 I-ERFKNQQTKDALGNLLKNVREKNG-----ISFFGAIVPAANMDELRKAADIVKGKFPR 791

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G  +L   + EK   V +   E +    +   +   +AK+  GGGGGG+P +AQ+GG N 
Sbjct: 792 GAFILGAAAGEKVNLVGMASEEAVKTGIHMGKVVSAAAKIC-GGGGGGKPAVAQAGGKNI 850

Query: 883 NKADQAI 889
           ++   AI
Sbjct: 851 SELQNAI 857


>gi|255532429|ref|YP_003092801.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255345413|gb|ACU04739.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 900

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 333/941 (35%), Positives = 519/941 (55%), Gaps = 111/941 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF+   H ++ S+ ++  NDPTLMFTN+GM  FK++F G+    Y  VT  Q+
Sbjct: 6   IRQAYLKFFESKQHHIVASAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRVTDTQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + + + +LY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYKIPKDKLY 125

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +++++ DE        EA++LWK+   +  ++II     DNFW M +TGPCGPCSEI  D
Sbjct: 126 VSIFEGDEKEGLPRDTEAYELWKQY--VPEERIILGNKKDNFWEMGDTGPCGPCSEIHVD 183

Query: 179 QGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
              C P        G    + +  + IEIWN VFMQF +       +LP   +DTGMG E
Sbjct: 184 ---CRPDDERKLVEGKTLVNADHPQVIEIWNNVFMQFNRLKDGSLQLLPAQHVDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+  VLQ K++NYD D+F+ LIQ      G++Y  N   +   RV+ DH+R+ +F+IADG
Sbjct: 241 RLVRVLQGKSSNYDTDVFQPLIQFIAAKAGIQYGMNEQTDIAMRVMADHVRAIAFVIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N   GYV+RRI+RRA+ YA   L   +P +  L+P L  +    + EL   +  ++
Sbjct: 301 QLPSNNKAGYVIRRILRRAVRYAYTFLNLKDPFLNELVPVLAEQFKGVFEELALQQDFVQ 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDG-------------------------VLSHLGKDEILN 383
           + +  E+  F +TL  G+   D                          V S L    +++
Sbjct: 361 KVILEEEVSFLRTLATGIQRFDSYTKKQAEFLMSENAIDPEKSFEDQWVHSILKDQMVIS 420

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G+ AF+L DT+G P+D+ + ++       +D+  +N+AL +Q+ R+RA +  + +G    
Sbjct: 421 GEFAFELNDTYGFPIDLTE-LMAREKRWSVDMEEYNKALLKQKERSRA-ATAVDTGD--- 475

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
            W  +       +F+GYD       + + R+V                            
Sbjct: 476 -WVLVNPDL-EVEFVGYDDAEAETEIIKYRRV---------------------------- 505

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL---QITDVQKKAEGIFVHHAIV 560
            A   ++ ++V  +TPFYAE+GGQ+GDTG  + D  RL   +ITD  KK  G+ VH+A  
Sbjct: 506 SAKGKEQYQIVLSKTPFYAESGGQVGDTG-RLEDHSRLFFVEITDT-KKENGVIVHYADT 563

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               +      V+    +N+R LS  NH+ATHLLH AL  +LGSHV+Q GS + PD LRF
Sbjct: 564 LPEDIEGHFWAVID---ENKRLLSQDNHTATHLLHAALKKVLGSHVNQKGSLVNPDYLRF 620

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRV 678
           D +H   +T  EL  IE  VN  I +N+P+   R +  + AI+SG  AL G KY D VR+
Sbjct: 621 DFSHFARVTDEELSQIEHLVNQKIRENIPLKEQRYVPYDQAISSGVTALFGEKYGDLVRI 680

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           ++  ++D   +S  LCGGTHV +TG+I    I++ES++ AG+RRIEAIT  +A + ++ Q
Sbjct: 681 IT--FDDH--YSKELCGGTHVQATGQIGYFKIIAESAVAAGVRRIEAITADKAEAFVLAQ 736

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNF 796
           +++L  L   LK ++ ++   V  + EE  +L+    K  L+   N++    H +  +N 
Sbjct: 737 NKELNELRELLKGNK-DLKAAVAGLIEENNRLKKDAEKAVLEQSANLKHEIVHHLKTING 795

Query: 797 MSHIISEVD---SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DR-FN 851
           ++ I + VD   +  +K++  A++  +    ++   +  + K  + ++++E+L+ DR  N
Sbjct: 796 INLIATHVDLPNADAVKNLAYAVKDMVDDLFLVFTTLI-DDKPGITVMLSENLVKDRGLN 854

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           A ++ R  AK +  GGGGG+P  A +GG N     + +AGV
Sbjct: 855 ASNIVRELAKDI-QGGGGGQPFYATAGGKN----KEGLAGV 890


>gi|296876817|ref|ZP_06900865.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432319|gb|EFH18118.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 872

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 342/931 (36%), Positives = 508/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP  
Sbjct: 1   MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG     +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL+ G      ++  L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q  
Sbjct: 411 IAEEAGMT-VDRDGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESSFNYNASQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+  EAVS     ++F +T
Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G  +     +   +TDVQK   G  +H   V    L       L ID
Sbjct: 498 PFYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE
Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + + V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GGYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H+     +++  +S  D
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   ++   T+++    +A ++ +  A ++  
Sbjct: 787 AGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKEV----HAGNVIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG N  K  + +  VA  L
Sbjct: 842 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|217034055|ref|ZP_03439476.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10]
 gi|216943450|gb|EEC22904.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10]
          Length = 847

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 317/837 (37%), Positives = 471/837 (56%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G+  +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVR-MDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y   +F GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECSAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H K +   EL+ +ED+VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    I+ ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRILKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q      
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ------ 731

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K  ++V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|34540951|ref|NP_905430.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|41018164|sp|Q7MV54|SYA_PORGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34397266|gb|AAQ66329.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 876

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 336/922 (36%), Positives = 502/922 (54%), Gaps = 90/922 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF   GH+++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  
Sbjct: 1   MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY TV+        D D EA   W +   L  ++II    +DNFW M +TGPCGPC
Sbjct: 121 DPQRLYATVFEGNPEEGLDRDNEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      GL   ++   + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+    +TG+ Y  +  + +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIRTLATMTGIGYGEDSTSDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELI 341
            DG LP+N   GYV+RRI+RRA+ Y    GYT     E  M  LLP L   MG AYPEL 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRY----GYTFLHCREAFMYRLLPTLIDTMGDAYPELQ 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
             + LI   ++ E+E F +TL+ G+ LL+  ++        +L+G  AF+LYDT G PLD
Sbjct: 355 AQRELISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLD 414

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL   G+  +D   F+  +++Q+ RAR ++  + +G     W  L+E  G ++F G
Sbjct: 415 LTALILSENGMT-VDESGFDTEMQKQKERAR-NAAAVEAGD----WVVLRE--GESKFSG 466

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD      F + + ++L                + + Q+ +        +  +VV   TP
Sbjct: 467 YD------FTETETEILR--------------YRQVKQKNK--------EYFQVVLSDTP 498

Query: 520 FYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQ+GD+G  I + G+   I D  K+   + VH  ++++    T  + V  I+  
Sbjct: 499 FYAEMGGQVGDSGQLIDESGVAYDIFDT-KRENNLSVH--LMKKLPESTTDTFVARINQD 555

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            RRQ   NH+ATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   ++  E++ +E+ 
Sbjct: 556 KRRQAEANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEEL 615

Query: 639 VNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           V++ I  +      R +   +A A GA AL G KY + VRV+          S  LCGGT
Sbjct: 616 VSERIRADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYG------SSVELCGGT 669

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ STG I    IV+ESSI +G+RRIEA+TG  A   +  +++ L ++      +  N++
Sbjct: 670 HIPSTGMIGAFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFN-NNPNLI 728

Query: 758 GRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKEL 809
             ++++ EE   L  Q+   K +  L  +     +  DV       F+   I E ++   
Sbjct: 729 KSIKKMLEEDASLKKQIADMKHERMLKFKKSLLEQ--DVRRRGIRLFLFQEIMEAETA-- 784

Query: 810 KSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           K +   +  ++Q   +++ G ++  +K ++ +++++DL +   +A  L R +AK +  GG
Sbjct: 785 KDIAFQIAGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHI-QGG 843

Query: 868 GGGRPHMAQSGGPNGNKADQAI 889
           GGG+PH A +GG N      AI
Sbjct: 844 GGGQPHFATAGGKNPKGLPAAI 865


>gi|315587131|gb|ADU41512.1| alanine--tRNA ligase [Helicobacter pylori 35A]
          Length = 847

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 319/838 (38%), Positives = 474/838 (56%), Gaps = 66/838 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH +  S  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y   +F GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECSAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                I    K   G+  + +++E + +L+    ++  +    R +++ +HSATHLL  A
Sbjct: 507 NEEAAIVLDTKNFFGL--NFSLLEIKKVLKKGDQVIAQVS-DERLEIAKHHSATHLLQSA 563

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M  
Sbjct: 564 LREVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNTQIFKHLNSQVEHMPL 623

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             A   GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES +
Sbjct: 624 NQAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGV 678

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q     
Sbjct: 679 SSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----- 731

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K  ++V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 732 -KAPISV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|327473314|gb|EGF18734.1| alanine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 872

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 345/931 (37%), Positives = 510/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ K  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   SG    ++F +TP
Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ             A  ++  NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|317180966|dbj|BAJ58752.1| alanyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 847

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 319/833 (38%), Positives = 467/833 (56%), Gaps = 56/833 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLHFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+  FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVVFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFETC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y   +F GY+               C K  
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTE-----------CCAKAL 461

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
               +    I            EA   Q+V V+ ++TPFYAE GG +GD G  + D    
Sbjct: 462 GFFDSDFKEIT-----------EANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++LP     M    A  
Sbjct: 569 GPHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNVQIFKHLPSQVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q      K  +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVMAGINKLKESVKNSQ------KAPI 735

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 736 SV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|254557076|ref|YP_003063493.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1]
 gi|254046003|gb|ACT62796.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1]
          Length = 880

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 336/900 (37%), Positives = 506/900 (56%), Gaps = 71/900 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPNNPRMTSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F  D 
Sbjct: 67  QKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGWDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D +A K W+  +G+  D II++   DNFW + + GP GP SEIF+D+GE 
Sbjct: 123 DKLYMTVYPKDTDAAKFWEA-TGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRGEA 178

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+E+WN+VF QF    +     LP+ +IDTGMGLER+ +
Sbjct: 179 FNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           V Q    N++ DLF  +I  +E+++  K+ G+N    V+ +VI DH R+ +F I+DG LP
Sbjct: 237 VFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE+ + 
Sbjct: 297 SNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKIVA 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++      L
Sbjct: 357 SEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAGDEDL 416

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   ++ QR RAR A S     G    +   +K     ++++GYD        
Sbjct: 417 -DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSLLIDIKT---PSEYVGYD-------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LTN V   +  I+    +V+   SGQ  E++F +TPFYAE GGQ+ 
Sbjct: 465 -------------ELTN-VQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + D   +  ++TDVQ       +H   V +  +R + +  L +D     ++  NH
Sbjct: 510 DRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKP-MRKDATYTLNVDLAFHNKVEKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I   L
Sbjct: 569 TATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAAL 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+ L
Sbjct: 629 PVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELGL 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++  +
Sbjct: 684 FKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQAD 743

Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821
            +  Q   A  + +L  +       ++ DVN  + I  +++     +L+ + D  + K  
Sbjct: 744 LKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQY 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879
           S +++L  +  E K ++L+ V++D +     A DL + ++ KV   GGGGGRP +AQ+GG
Sbjct: 804 SDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVG--GGGGGRPTLAQAGG 860


>gi|297562016|ref|YP_003680990.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846464|gb|ADH68484.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 888

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 346/919 (37%), Positives = 504/919 (54%), Gaps = 68/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I   FL FF+KNGH ++PS+SLI   DPTL+   +GMVPFK  F GQ  P +   T
Sbjct: 2   ETAEIARRFLSFFEKNGHTVVPSASLI-AEDPTLLLVPAGMVPFKPYFLGQRTPPHDTAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D++ VG+T+RH TFF+MLGNFSFG YFKERAI LAW+L+T       
Sbjct: 61  SVQKCIRT----KDIEEVGKTSRHATFFQMLGNFSFGDYFKERAIPLAWELVTTPVEEGG 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F +D  RL++TVY +D+EA  +W+   G+  ++I R+   +N+W M   GPCGPCSEIF+
Sbjct: 117 FGIDPERLWVTVYLDDDEAEAIWRDKVGVRPERIQRMGKEENYWDMGVPGPCGPCSEIFY 176

Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERFIL---PKMSIDTGMGLE 231
           D+G     G+ G  E  E RYIEIWNLVFMQ+E  + + +E  IL   PK +IDTG+GLE
Sbjct: 177 DRGPEY--GVDGGPEADEDRYIEIWNLVFMQYERGEGSGKEYPILGELPKKNIDTGLGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A VLQ   N Y+ D+   ++  + ++TG +Y  N    V  RV+ DH+RS+  L+ DG
Sbjct: 235 RLAAVLQGVDNIYETDIIGRVLHRAAELTGTRYGDNQEQDVMLRVVADHVRSAVMLVGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIE 348
           + P NE  GYVLRRI+RR++   RLL  TE   +H L  +  + M   YP+L+    +I 
Sbjct: 295 VRPGNEKAGYVLRRILRRSIRNLRLLSGTETAFLHELTEVSIDAMKDIYPDLLDRADVIH 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             + +E+  F +TL  G  L       +  G   + +G  AF+L+DT+G P+D+  ++  
Sbjct: 355 GVIDTEERNFAETLRAGTALFGRAAERTRAGGGTVFSGTDAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D  SF + ++ Q+  A+A +     G  +  ++  + E  G T F+GY     
Sbjct: 415 EQGLS-VDESSFRELMQRQKDTAKADARSKKLGNADISLYARMLEGAGETDFLGY----- 468

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           ++   E R                  VK IV  G     A +G KVE+V D TPFYAE+G
Sbjct: 469 TESESESR------------------VKGIVVDGVSAPAARAGDKVEIVLDSTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG    DG  +  + DVQK   G+FVH   V  G +  + ++   ID   R  + 
Sbjct: 511 GQLADTGTLTVDGRGVVDVEDVQKPLPGLFVHRGTVRSGEVVLDDTVHAGIDTGRRHAIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +HSATHL+H AL   LG    Q GS   P  LRFD T    +    L  +E+ VN ++A
Sbjct: 571 RSHSATHLIHSALRNALGPSAGQAGSENRPGQLRFDFTADSALGGERLAEVEEEVNTVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            ++PV T   + ++A+ +GA A+ G KY DRVRV  VE  D   +S  LCGGTHV ST  
Sbjct: 631 GDIPVQTEEKSLDEALKTGAMAMFGEKYGDRVRV--VEMSD---YSVELCGGTHVPSTAR 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA------RSHLMGQ-DEKLKSLASFLKVSQGNVV 757
           + ++ ++ ESSI +G+RR+EA  G  A       S L+GQ  E+LK+    L     ++V
Sbjct: 686 LGIVKLLGESSIGSGVRRVEAAVGVDAFRRLSKESTLVGQLSEQLKTPREELPERIDSMV 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            R+     E  KL+     +      E    H  A V               K V+D   
Sbjct: 746 SRLRAAEREIEKLRAAQVLQAAGSIAEGARRHGAALVVAAPAPEGASGDDLRKLVLDVRG 805

Query: 818 K--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPH 873
           +  + +  ++ +  + K++   V+++ T     +    A +L  ++A+ L GGGGGG+P 
Sbjct: 806 RLGEDEPAVVAMTAVPKDR--PVVVIATNKAAQKAGIKAGELVGIAARAL-GGGGGGKPD 862

Query: 874 MAQSGGPNGNKADQAIAGV 892
           +AQ GG +  K D+A+  V
Sbjct: 863 IAQGGGSDATKVDEALRAV 881


>gi|300173639|ref|YP_003772805.1| alanyl-tRNa synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299888018|emb|CBL91986.1| alanyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 360/945 (38%), Positives = 521/945 (55%), Gaps = 106/945 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S IR  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSQIRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSAVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE  I  AW+LLT  K + L
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEGIPWAWELLTSPKWYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  LY+TVY +D EA K+W++ + +    I  +   DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKELLYVTVYPKDTEAKKIWQEKTDIPEGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177

Query: 181 -----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225
                      E  PGG      E ERY+EIWN+VF QF       +  +   LP  +ID
Sbjct: 178 KDFQDLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNID 231

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVNH------RVIVDH 278
           TGMGLER+ +V Q+   N+D DLF  +I+A+E ++ G KY+  ++VN       +VI DH
Sbjct: 232 TGMGLERVVSVFQKGRTNFDTDLFLPIIKATEALSDGFKYD--SLVNSESNTSFKVIADH 289

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +R+ +F I DG LP+NEGRGYV+RR++RRA+ + + LG T   +  L+P +   M S YP
Sbjct: 290 IRAVTFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGITGEFLTQLVPVVGDIMQSYYP 349

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHG 395
           E+++    I++ + +E++RF  TL  GL LL+ V++     GK + L+G  AFKL DT+G
Sbjct: 350 EILENTPKIQKIIAAEEKRFNATLTGGLALLNQVINQAKAEGKTQ-LSGIDAFKLSDTYG 408

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGA 454
            PL++ Q+      L  +DI  FN AL+ QR+RARA      S G    +   LK    A
Sbjct: 409 FPLELTQEQAAEADLT-VDIQGFNDALQAQRTRARAARANDKSMGIQNAVLTDLKV---A 464

Query: 455 TQFIGYDL--LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           +Q++G+ +  +  +K M     ++ Q        GV +++ +          AV GQK++
Sbjct: 465 SQYVGWSVTAVDNAKIM----AIIGQD-----DQGVDALLSS----------AVKGQKLQ 505

Query: 513 VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +VFD+TPFYAE GGQ+ D G    A G  I  ++ DVQ    G  +H   V      T+ 
Sbjct: 506 LVFDKTPFYAEMGGQVADYGEVLTATGKVIA-RVIDVQNAPNGQHIHTVDVLCDFKLTD- 563

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L +D      +S NH+ATH+L  +L  I+G  + Q GS + P+ LRFD T+  P++ 
Sbjct: 564 TVNLQVDMARHIAVSKNHTATHMLDQSLRNIIGGDIHQAGSLVEPEYLRFDFTNEGPVSE 623

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             ++ IE  +N  IA NLPV     + E A   GA A+ G KY   VRVVS+     G  
Sbjct: 624 ENIEKIETLMNHEIANNLPVSWLETDIESAKKMGAVAVFGEKYGALVRVVSI-----GDF 678

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           +    GGTHV ST E+ L  IVSES I AG+RRIEA+TG +A +    ++  LK++A+ +
Sbjct: 679 NKEFDGGTHVKSTAELGLFKIVSESGIGAGVRRIEAVTGLQAIALYQAEENALKAIATTV 738

Query: 750 KVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           K  +  +V  +V ++     +L+L   +RKL+ ++E    +  A     + + S+V +  
Sbjct: 739 KAQRLTDVPSKVADM-----QLELKATQRKLE-SLESQLANAAA-----TEVFSDVKTSH 787

Query: 809 LKSVMDA-LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
             S + A LQ     G+  +    K    S ++V+   +  R N +  A  SA   G   
Sbjct: 788 GHSYITAQLQVSGMDGLRQVADNWKMSYPSDVLVLAATVDGRVNLIVTASPSANAAGIKA 847

Query: 868 G--------------GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G              GGRP MAQ+GG N     +A A VA+FL K
Sbjct: 848 GELIKAIAPRVGGGGGGRPDMAQAGGKNPAGIAEAFADVANFLAK 892


>gi|301794425|emb|CBW36859.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 872

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 346/926 (37%), Positives = 503/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LL    
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLISPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +TL  G     G+++ L   G+  I   DV FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           I    G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y  +Q  
Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL- 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                         S +V  +    E+   AVS     ++F +T
Sbjct: 469 -----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAET 497

Query: 519 PFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ+ D G  + +   I   +T+VQK   G  +H   V    L       L ID
Sbjct: 498 SFYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
           V  +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L+
Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG N  K  + +  VA  L
Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|295425855|ref|ZP_06818535.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295064458|gb|EFG55386.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 879

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 343/929 (36%), Positives = 518/929 (55%), Gaps = 92/929 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RH TFFEMLGNFS G YF+  AI  AW+ LT  K   LD+
Sbjct: 67  QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRNEAITWAWEFLTSPKWLGLDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY TVY +D ++ K+W+K +G+  + I ++   DNFW + E GPCGP +EIF+D+G  
Sbjct: 123 SKLYCTVYPKDIDSQKVWEK-AGMPKNHIFKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +
Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ    N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG LP
Sbjct: 237 ILQGAPTNFETDLFLPIIHATEEMTPGKKYGVNKADTTAFKIIADHVRAVSFAIADGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  ++
Sbjct: 297 SNNGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENVIQ 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF  TLD GL LLD +++   K  ++ ++G  AFKL+DT+G P ++  +     GL
Sbjct: 357 NEEERFQATLDSGLTLLDELIAKAKKSDNKTISGKDAFKLFDTYGFPYELTFESAQDAGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F++ ++ Q+ RAR     L S G  +    ++K+K   ++F         K+ 
Sbjct: 417 K-IDKKGFDKEMQAQKERARKARGDLQSMGRQDVTLMNIKDK---SEF------EYGKYE 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           ++  K++                  IV   ++V +A  G++  +VFD+TPFYAE GGQ+ 
Sbjct: 467 EDHAKLI-----------------DIVVNDKLVNKA-DGEEAILVFDKTPFYAERGGQVA 508

Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585
           D G     DG +  ++TDVQ       +H   +   IL  E     VL ID + R  L  
Sbjct: 509 DHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDI---ILPLEKGQEYVLKIDRERREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I +
Sbjct: 566 SHTATHLLHAALRQVLGEHTHQAGSLVEPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T +   E+    GA AL   KY D+VRVV V     G  SS  CGGTH  +T +I
Sbjct: 626 AIQVKTTVTTPEEGKKMGALALFNGKYGDKVRVVQV-----GDFSSEFCGGTHCDNTNQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764
            +  I+SES++ AG+RRIEA+T ++A  +L  +   L  +   +K ++ + ++ +++   
Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLADRSTLLDDIQEHVKATKPDGIMDKID--- 737

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--------------CHKIADVNFMSHIISEVDSKELK 810
                  L  +    Q  +EDL+                K  D+  ++         +L+
Sbjct: 738 ------SLESSLHDAQKQIEDLTKKINQAKAGEIFDNVQKAGDLTVIAATADVSGMNDLR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            + D+ +   +S +++L     + KA+++I + +  LD+   A DL + +A +  GGGGG
Sbjct: 792 ELADSWKSGNKSDVLVLAA-KNDGKANMIISLNKKALDKGLKAGDLIKKAAPIF-GGGGG 849

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP+MAQ+GG      D+AI  V S + K
Sbjct: 850 GRPNMAQAGGKKPEGIDEAIKTVISEISK 878


>gi|149011620|ref|ZP_01832816.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147764051|gb|EDK70983.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
          Length = 872

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 342/925 (36%), Positives = 502/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++     D    I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEVE---VDPSHLIPIEDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINELFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y A+Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+  EAVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +  ++   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             + E + E+ R+LQ  +A  K K            + +VN   +I S+V   D+  L++
Sbjct: 733 PHKAEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|302874705|ref|YP_003843338.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690682|ref|ZP_07633128.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577562|gb|ADL51574.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 879

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 317/907 (34%), Positives = 517/907 (57%), Gaps = 52/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG  KP    +TT
Sbjct: 6   LNELREAYLKFFESKEHLRLPSYSLVPKNDKSLLLINAGMAPLKPYFTGLSKPERNRITT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   + + 
Sbjct: 66  CQKCVRTG----DIENVGITSRHATFFEMLGNFSFGDYFKNEVIPWAWEFVTEVLKMPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y ED+EA+++W   + +    I R+   DNFW     GPCGPC+EI F++G  +
Sbjct: 122 KLFVTIYLEDDEAYEIWTTKTDVDKSHIFRLGKKDNFWEHG-AGPCGPCTEIHFNRGNAV 180

Query: 184 --PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   ++ + ++ IE WNLVF QF+   +     L   +IDTG GLER+A ++Q K 
Sbjct: 181 VTTAEEFEAAADEDKIIEFWNLVFTQFDGDGEGNYEKLKSTNIDTGAGLERLAAIMQGKE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D   +++    +V G+KY  N  N ++ R+I DH+RS +FLI+DG++P+NEGRGY
Sbjct: 241 SIFEVDTMNNILTEVTKVAGIKYGDNAKNDISIRIITDHVRSVTFLISDGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG  E  + ++   +  +   AYPEL +    I++ +R E++RF 
Sbjct: 301 VLRRLLRRAARHGKQLGIKEAFLCNICDVVIRDSKEAYPELDEKADYIKKVIRLEEDRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L   +  + ++  + L G+ AFKLYDT+G P+++ Q+IL       ID   
Sbjct: 361 ETIDSGMEILMSYVEEMKQENSDTLAGEKAFKLYDTYGFPIELTQEILEEMNYK-IDKDG 419

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + + +QR RAR A       GT  K+  ++ +    T+F GY   +            
Sbjct: 420 FTKEMNDQRERARSARETSNYMGTDIKVLDTISQDI-KTEFDGYGKTK------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      ++S V  I++  E V     GQK  ++ + TPFYAE GGQ+GDTG    
Sbjct: 467 -----------LTSKVVMIIENDEFVNTIEEGQKGIILAEVTPFYAEMGGQIGDTGEIYN 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +  +  + D +K   G   H+  ++ G L  +  ++L +D + R ++  NH+ATH+++ A
Sbjct: 516 ENFKAIVIDTKKNISGKIAHYVEIKEGKLTLDEEIILQVDEKRRDEIRKNHTATHMINKA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           LS +LGSHV Q GS +T + LRFD +H   +T  E+  +E  VND I +   V T  M+ 
Sbjct: 576 LSLVLGSHVHQAGSLVTAERLRFDFSHFTAMTEEEIFKVEKLVNDEIEKLTEVNTEEMSL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             A   GA  +   KY+D VRVV+V     G  SS LCGG H+ + G+I L+ I SE+ I
Sbjct: 636 AVAKEKGAVGIFDDKYSDVVRVVNV-----GDFSSELCGGIHIDNIGKIGLVKITSETGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIH 774
            AG RRIEA+ G  A  ++  + + LK  ++ LK     +V R++ +  +   ++ ++  
Sbjct: 691 AAGTRRIEAVVGANAIQYMEEKAQLLKEASALLKTMPNEIVQRIQLLLSDVKDKEKEIEK 750

Query: 775 AKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K KL    E+    S  ++  +   ++ +  +D+  L+ + D ++ K+  G+++L G  
Sbjct: 751 LKSKLASGEEENILASVKEVKGIKVAAYALKGIDANGLRELADKVRDKVGDGLVVL-GSV 809

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++K S++ + T++ +++   +   ++  ++  + GGGGGGRP MAQ+GG +  K ++AI
Sbjct: 810 MDEKVSLVAMATKEAVNK--GIHCGKIIKEISAIVGGGGGGRPDMAQAGGKDPAKVEKAI 867

Query: 890 AGVASFL 896
             V + +
Sbjct: 868 GEVLNIV 874


>gi|313205146|ref|YP_004043803.1| alanyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312444462|gb|ADQ80818.1| alanyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 869

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 346/912 (37%), Positives = 494/912 (54%), Gaps = 82/912 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL+FF   GH+++PS+ ++  +DPTLMFTN+GM  FKNI  G +   Y  V   QK
Sbjct: 6   IRQSFLDFFASKGHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYSRVADSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ LT+   LD+ RLY
Sbjct: 66  CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLTEVLKLDKDRLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV+        + D+EA  +W +   L   +II     DNFW M +TGPCGPCSEI  D
Sbjct: 126 VTVFEGYAPEGLERDDEAAAIWAQF--LPEHRIINGNKKDNFWEMGDTGPCGPCSEIHID 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                      GL   +    + IEIWN VFMQ+ ++       LP   IDTGMG ER+ 
Sbjct: 184 IRDNDERAKIDGLTLVNGSHPQVIEIWNNVFMQYNRKADGSLEGLPAKVIDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292
             +Q   +NYD D+F  +I    +V G +Y  +  V+   RVI DH+R+ +F I DG LP
Sbjct: 244 MAMQGVQSNYDTDVFTPIIAEIGRVCGAEYGKDEKVDIAMRVIADHIRTIAFSITDGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N   GYV+RRI+RRA+ Y    LG     M  L+  L   MG AYPEL+  K LIE+ +
Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQRHAFMYKLITVLSENMGKAYPELLSQKTLIEKVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + E+E F +TL+ G+ LLD V++      K EI  G VAF LYDT G PLD+ + IL   
Sbjct: 364 KEEEESFLRTLETGIKLLDKVMADSKAAAKTEI-EGKVAFTLYDTFGFPLDLTELILREN 422

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               ++I  FN  +++Q+ RAR       + T    W +++E  G ++F+GYD      F
Sbjct: 423 NFT-VNIDEFNSEMQKQKERARN-----AAATETGDWVTVRE--GDSEFVGYD------F 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            + D ++L                + + Q+ +        +  ++V  +TPFYAE GGQ+
Sbjct: 469 NEADTEILR--------------YRKVKQKNQ--------EYYQIVLSKTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    D   + I D  KK   + VH  I  +       +   TID + R+    NHS
Sbjct: 507 GDCGTLKSDHGSIDIIDT-KKENNLAVH--IANKLPEDVTETFTATIDIEKRKATECNHS 563

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++++E   N  I +N P
Sbjct: 564 ATHLLHEALREVLGTHVEQKGSFVSPDALRFDFSHFQKLTKEEIRAVEAIANRKIRENYP 623

Query: 649 VVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  R   RE  IA     GA AL G KY + VRV+          S  LCGGTHVS+TG 
Sbjct: 624 LQER---RETPIAEAQAMGAMALFGEKYGETVRVIQFG------SSVELCGGTHVSATGN 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L+ +V+ESSI AGIRRIEAITG+     L  Q E +      L  +  +V+  +  + 
Sbjct: 675 IGLVRVVAESSIAAGIRRIEAITGKAVEELLDKQQETIGEAKELLN-NAPDVISAIRRLS 733

Query: 765 EEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE   L+      +H K  + L  + L+   I     +      + + + K++   ++  
Sbjct: 734 EESADLKKQVEAFVHEK-IMSLRDKLLAEATIVKGFKVIQYEGSLTADQTKTLAFQIRNV 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               +  + G   + K S+ +++++DL+    NA ++AR +AK +  GGGGG+P  A +G
Sbjct: 793 QAEKLFFVAGCVADGKPSLTVLLSDDLVAGGLNATNIAREAAKEI-QGGGGGQPFFASAG 851

Query: 879 GPNGNKADQAIA 890
           G N     +AIA
Sbjct: 852 GKNLAGIQKAIA 863


>gi|300768023|ref|ZP_07077929.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181070|ref|YP_003925198.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|300494372|gb|EFK29534.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046561|gb|ADN99104.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 880

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 336/900 (37%), Positives = 506/900 (56%), Gaps = 71/900 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDNPRMTSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F  D 
Sbjct: 67  QKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGWDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D +A K W+  +G+  D II++   DNFW + + GP GP SEIF+D+GE 
Sbjct: 123 DKLYMTVYPKDTDAAKFWEA-TGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRGEA 178

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+E+WN+VF QF    +     LP+ +IDTGMGLER+ +
Sbjct: 179 FNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           V Q    N++ DLF  +I  +E+++  K+ G+N    V+ +VI DH R+ +F I+DG LP
Sbjct: 237 VFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE+ + 
Sbjct: 297 SNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKIVA 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++      L
Sbjct: 357 SEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAGDEDL 416

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   ++ QR RAR A S     G    +   +K     ++++GYD        
Sbjct: 417 -DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSLLIDIKT---PSEYVGYD-------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LTN V   +  I+    +V+   SGQ  E++F +TPFYAE GGQ+ 
Sbjct: 465 -------------ELTN-VQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + D   +  ++TDVQ       +H   V +  +R + +  L +D     ++  NH
Sbjct: 510 DRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKP-MRKDATYTLNVDLAFHNKVEKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I   L
Sbjct: 569 TATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAAL 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+ L
Sbjct: 629 PVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELGL 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++  +
Sbjct: 684 FKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQAD 743

Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821
            +  Q   A  + +L  +       ++ DVN  + I  +++     +L+ + D  + K  
Sbjct: 744 LKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQY 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879
           S +++L  +  E K ++L+ V++D +     A DL + ++ KV   GGGGGRP +AQ+GG
Sbjct: 804 SDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVG--GGGGGRPTLAQAGG 860


>gi|327458679|gb|EGF05027.1| alanine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 872

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 344/931 (36%), Positives = 514/931 (55%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ K  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    +++G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAQGIVADLKEKGQTVISGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   +G    ++F +TP
Sbjct: 459 ------STFNYEKEELTAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V   I   + S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPIALGQ-SYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + ++ R+LQ  +A+ K +           NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQDQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+++    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKEV----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|261838564|gb|ACX98330.1| alanyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 847

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 316/837 (37%), Positives = 468/837 (55%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK++FTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDVFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYRVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+    L +   F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNAFVGYETTECLAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+  V+ ++TPFYAE GG +GD G    D
Sbjct: 473 KANP--------------------------NQEAWVLLEKTPFYAEGGGAIGDRGTLFKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              + I    K   G+      +++ + + +  +    D   R +++ +HSATHLL   L
Sbjct: 507 NEEVAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSTL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        + ++LK+    LK    +V+  + ++ E  +  Q      
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKIALK--NNDVIAGINKLKESVKNSQ------ 731

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K  ++V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHEKLLAMVFKKENER 784


>gi|28378871|ref|NP_785763.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|38258328|sp|Q88V10|SYA_LACPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28271708|emb|CAD64614.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1]
          Length = 880

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 336/900 (37%), Positives = 506/900 (56%), Gaps = 71/900 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P    +T+ 
Sbjct: 7   SEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDNPRMTSS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F  D 
Sbjct: 67  QKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGWDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +D +A K W+  +G+  D II++   DNFW + + GP GP SEIF+D+GE 
Sbjct: 123 DKLYMTVYPKDTDAAKFWEA-TGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRGEA 178

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                   P   PG   E ERY+E+WN+VF QF    +     LP+ +IDTGMGLER+ +
Sbjct: 179 FNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292
           V Q    N++ DLF  +I  +E+++  K+ G+N    V+ +VI DH R+ +F I+DG LP
Sbjct: 237 VFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE+ + 
Sbjct: 297 SNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKIVA 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++      L
Sbjct: 357 SEESRFNETLNDGLNLLNNLIAETKQTGHDTLAGKDAFKLYDTYGFPFELTKEYAGDEDL 416

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F   ++ QR RAR A S     G    +   +K     ++++GYD        
Sbjct: 417 -DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSLLIDIKT---PSEYVGYD-------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LTN V   +  I+    +V+   SGQ  E++F +TPFYAE GGQ+ 
Sbjct: 465 -------------ELTN-VQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + D   +  ++TDVQ       +H   V +  +R + +  L +D     ++  NH
Sbjct: 510 DRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKP-MRKDATYTLNVDLAFHNKVEKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I   L
Sbjct: 569 TATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAAL 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+ L
Sbjct: 629 PVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELGL 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++  +
Sbjct: 684 FKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQAD 743

Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821
            +  Q   A  + +L  +       ++ DVN  + I  +++     +L+ + D  + K  
Sbjct: 744 LKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQY 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879
           S +++L  +  E K ++L+ V++D +     A DL + ++ KV   GGGGGRP +AQ+GG
Sbjct: 804 SDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVG--GGGGGRPTLAQAGG 860


>gi|308064021|gb|ADO05908.1| alanyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 847

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 317/833 (38%), Positives = 469/833 (56%), Gaps = 56/833 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLERKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y    F+GY+               C K  
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTE-----------CCAKAL 461

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
               +    I            EA   Q+V V+ ++TPFYAE GG +GD G  + D    
Sbjct: 462 GFFDSDFKEIT-----------EANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HVSQ GS +    LRFD +H K +   EL+ +ED+VN  I ++L    + M    A  
Sbjct: 569 GPHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLNSQVQHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q    K  + +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ----KAPVSM 737

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 738 ---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKNKHERLLAMVFKKENER 784


>gi|300725879|ref|ZP_07059342.1| alanine--tRNA ligase [Prevotella bryantii B14]
 gi|299776816|gb|EFI73363.1| alanine--tRNA ligase [Prevotella bryantii B14]
          Length = 888

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 325/922 (35%), Positives = 501/922 (54%), Gaps = 92/922 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L++F+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKYFESKGHVIVPSAPIVVKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
               QKC+R  GKHNDL+ VGR +   HHT FEMLGN+SFG YFKE AI +A++ L    
Sbjct: 61  RADTQKCLRVSGKHNDLEEVGRDSALSHHTMFEMLGNWSFGDYFKEGAIDMAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA K W+K      + I+    +DNFW M + GPCG
Sbjct: 121 KLDPKDLYVTVFEGDEAENLERDDEAAKFWEK--HFPKNHIVNGNKHDNFWEMGDQGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PC+EI  D + E     +PG    +++  + IEIWN VFMQ+ ++       L    IDT
Sbjct: 179 PCTEIHIDFRSEEEKAKVPGEELVNKDHPKVIEIWNNVFMQYNRKADGTLEPLKMQVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY     EG+N           + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPIIDEIERISGKKYNHTFPEGDNGEGINEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM-CYARLLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+  Y   L   E  M  LLP L 
Sbjct: 299 IRVVADHLRAVAFAIADGQLPSNAKAGYVIRRILRRAVRYYYTFLDQKEAFMFKLLPTLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387
            EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L   GK E L+G  A
Sbjct: 359 AEMGGAYPELKAQQELIGRVMKEEEDSFLRTLEKGINLLNGDMETLKANGKTE-LDGASA 417

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F+L+DT+G PLD+ + ++C      +D   FN+ + +Q++RAR ++  + +G     W  
Sbjct: 418 FRLFDTYGFPLDLTE-LICTENGYTVDEKGFNEEMAKQKARAR-NAAAVENGD----WQV 471

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           +KE  G  +F+GYD       +   R+V  +K                            
Sbjct: 472 IKE--GEQEFVGYDYSEYPCHILRYRQVTQKKNTF------------------------- 504

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               E+V D TPFY E GGQ+GD G  + +   + +TD  K+     +H  IV++     
Sbjct: 505 ---YELVLDHTPFYGEMGGQVGDCGTLVSENETVTVTDT-KRENNQSIH--IVKKLPEDL 558

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
               +  +D   R   + NH+ATHLL +AL  +LG HV Q GS +    LRFD +H + +
Sbjct: 559 NAEFMACVDLDKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDDKVLRFDFSHFQKV 618

Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           T  E++ +E  VN +I Q+LP+   R    E+A   GA AL G KY D+VRVV       
Sbjct: 619 TDEEIRQVERIVNAMIRQDLPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFG---- 674

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S+  CGG H  STG I    I+SESS+ AG+RRIEA+TG+     L    + L  + 
Sbjct: 675 --PSAEFCGGIHAQSTGRIGFFKIISESSVAAGVRRIEALTGKACEETLYTLQDTLSDVK 732

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHII 801
           S    ++ ++   +++  +E+  ++    K + Q+      DL     +I  V  +  ++
Sbjct: 733 SLFNNAK-DLHAVIQKYIDEHDAMKKEVEKFQAQMVERTKNDLVSKAQEINGVKVVKAVL 791

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLS 859
             ++    K ++  +++ I   ++ ++G +   K  + ++ ++D++     NA  + R +
Sbjct: 792 P-LEPNAAKDLVFKIREAIPENLVAVIGSTSNDKPMLSVMFSDDMVKNHDLNAGKMIREA 850

Query: 860 AKVLGGGGGGGRPHMAQSGGPN 881
           AK++  GGGGG+PH AQ+GG +
Sbjct: 851 AKLI-KGGGGGQPHYAQAGGKD 871


>gi|258653460|ref|YP_003202616.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556685|gb|ACV79627.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 891

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 332/911 (36%), Positives = 497/911 (54%), Gaps = 65/911 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F++ GH ++PS+SLI   D T++FT +GM PFK  F GQ  P +   T+VQK
Sbjct: 6   IRRRFLDHFERAGHTVVPSASLI-SQDATVLFTIAGMAPFKPYFLGQSTPPFPRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR G    D+DNVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT       + LD
Sbjct: 65  CVRTG----DIDNVGVTTRHNTFFQMAGNFSFGDYFKAGAIEHAWTLLTSSLADGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY+ D+EA +LW++I+GL A++I R    DNFWSM   GPCGPCSEI++D+G 
Sbjct: 121 PDRLWVTVYESDDEAERLWQEIAGLPAERIQRRGMADNFWSMGVPGPCGPCSEIYYDRGP 180

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQ-----FEQQNKQERFIL---PKMSIDTGMGLE 231
              I GG P + E+  RY+E+WNLVFMQ      +   K +  IL   P+ +IDTG+G+E
Sbjct: 181 EYGIEGG-PVADED--RYLEVWNLVFMQDMRGESDGSGKGDFPILGPLPQQNIDTGLGVE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288
           R+A +LQ   N Y+ DL + +I + EQ++G KY G +    V  RVI DH RS   LI D
Sbjct: 238 RLAFLLQGVDNVYETDLLRPIIASMEQLSGKKYGGGDHQADVRFRVIADHSRSGMMLIGD 297

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RRA+  ARLLG TEP+M  L+  +   M  +YPEL      IE
Sbjct: 298 GVTPGNEGRGYVLRRLLRRAVRSARLLGVTEPVMPTLMSIVRDLMSPSYPELATDYERIE 357

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E++ F +T+  G  L D   + L    +  L G  AF L+DT G P+D+  ++  
Sbjct: 358 KVAATEEKAFLRTIASGSKLFDVAAADLATQHVTTLPGATAFTLHDTQGFPIDLTLEMAA 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D+  F + ++EQ+ RARA +     G  +   +      GAT+F GY     S
Sbjct: 418 EAGLT-VDVAGFERLMKEQKDRARADAKARKGGFADLSEYRRLLDQGATEFTGY-----S 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
           +   E R                  ++ +++ G  V  A  G+++E+V D+TP YAE+GG
Sbjct: 472 ELQTEAR------------------IRGLLRDGVPVPAAHEGEEIELVLDRTPLYAESGG 513

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  +G     ++ DVQK    + VH   +  G   T   ++  +D + R      
Sbjct: 514 QDSDAGTIVGAHGAAEVLDVQKVDRKLVVHRVRITDGEFTTGAQVLAKVDPEWRLGARQA 573

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG    Q+GS   P  LR D    + +++A    +E+  N  + Q+
Sbjct: 574 HSGTHVVHAALRQVLGPEALQSGSYNKPGYLRLDFAWDQALSAATRSELEEVANRAVRQD 633

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV     + ++A A GA AL G  Y+D VR+V +    GG  S  LCGGTHV  + +I 
Sbjct: 634 LPVRVLYGSMQEAQAMGAIALFGETYDDTVRIVEI----GGPWSVELCGGTHVEHSSQIG 689

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + I +ESS+ +G+RR+EA  G  A   L+ +   +  LAS LKV    + GR+E + ++
Sbjct: 690 PVAITAESSVGSGLRRVEAAVGIEAFHRLVAERTLVSQLASTLKVQPAELPGRIETLLDK 749

Query: 767 YRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKKI 820
            +    +L   +     NV         DV  ++ + +       + +L+++   ++ ++
Sbjct: 750 LKSAEKELAGLRAAALGNVAGTLAGGAIDVAGVALVAATAPEGTAAGDLRTLASDVRGRL 809

Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             + G++ L   +       + V    +     A +LA+    ++  G GGG+  +AQ  
Sbjct: 810 GDRPGVVALFAPAHASVPFAVAVNQGGIARGLAAGELAKAVLPLI-EGRGGGKKDLAQGA 868

Query: 879 GPNGNKADQAI 889
           G   ++  +AI
Sbjct: 869 GTRPDRIPEAI 879


>gi|327461590|gb|EGF07921.1| alanine--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327489449|gb|EGF21242.1| alanine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 872

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 345/931 (37%), Positives = 512/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   SG    ++F +TP
Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|225010000|ref|ZP_03700472.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005479|gb|EEG43429.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 879

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 346/922 (37%), Positives = 498/922 (54%), Gaps = 82/922 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+   H+++PSS ++  +DPTLMFTN+GM PFK  F G   P  Q V   QK
Sbjct: 6   IRAQFLAFFKDKNHQIVPSSPMVIKDDPTLMFTNAGMNPFKPYFLGNTLPKNQRVADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-------GYFKERAIQLAWDLLTKEFD 119
           C+R  GKHNDL+ VG+   HHT FEMLGN+SFG       GYFK+ AIQ AW LL   F 
Sbjct: 66  CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGVAKNNVDGYFKQEAIQWAWSLLVDVFK 125

Query: 120 LDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
           +D   LY+TV+         + D EA  LWK I  +   +I+     DNFW M + GPCG
Sbjct: 126 IDPNSLYVTVFEGSKDADQLEMDAEALSLWKAI--VPESQILFGNKKDNFWEMGDQGPCG 183

Query: 171 PCSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D    + +    G    + +  + +EIWNLVFMQF ++       LP   +DT
Sbjct: 184 PCSEIHVDIRTPEEKASVSGASLVNMDHPQVVEIWNLVFMQFNRKANGILEPLPAKHVDT 243

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMG ER+  VLQ   +NYD D+F  +I+  E ++G  Y  +    +  RVI DH+R+ +F
Sbjct: 244 GMGFERLCMVLQGVQSNYDTDVFTPIIKEIEVISGHSYGKDTPTDIAIRVIADHIRAVAF 303

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG A+PEL   
Sbjct: 304 SIADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMFKLVQVLSKTMGDAFPELNSQ 363

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           K LI+  ++ E++ F +TL++GL LLD  L    KD++L G+ AF+LYDT+G P+D+   
Sbjct: 364 KQLIQNVIKEEEQSFLRTLEQGLQLLD-TLILTAKDKVLAGEKAFELYDTYGFPIDLTAL 422

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL  RG A +D   F ++++ Q+ R+RA      S  +++ W  L E     +FIGYDLL
Sbjct: 423 ILSERGYA-LDQSGFEKSMQVQKQRSRA-----ASEVSKEDWEVLLED-DTQEFIGYDLL 475

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                + + RKV  +K                            G+  ++VF+ TPFY E
Sbjct: 476 ETQVKIAKYRKVTSKK---------------------------EGEMYQLVFNLTPFYPE 508

Query: 524 AGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ+GD G     +G    I D +K+   I    + + +      +S   ++D + R +
Sbjct: 509 GGGQVGDKGYLEAPNGDVTYIVDTKKENNEIIHFSSTLPKD---PRVSFKASVDKKQRDR 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            S NH+ATHLLH AL  ILG+HV+Q GS +    LRFD +H   +TS +LK IED VN  
Sbjct: 566 TSKNHTATHLLHQALRAILGTHVAQKGSAVHSKYLRFDFSHFSKVTSEQLKEIEDYVNAR 625

Query: 643 IAQNLPVVTRIMNRE--DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           I  ++P+     NR    A A GA AL G KY D VR +         HS  LCGGTHV 
Sbjct: 626 IDGHIPLEEH-RNRPLVQAQADGAMALFGEKYGDTVRSIRFG------HSIELCGGTHVK 678

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG+I    I  ES++ +GIRRIEAIT    + + +  D+ L+ + + L+++   V   +
Sbjct: 679 NTGDIWQFKITGESAVASGIRRIEAITSDAVKDYYLKTDQTLQQVLNQLQINTDPVTA-I 737

Query: 761 EEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDAL 816
            ++ EE+ +L+  L   +++   +V         ++N +  + +EV  D+  +K +   L
Sbjct: 738 TKLQEEFAQLKTTLTALQKEKAGDVGKSLAASFEEINGVRFLAAEVSLDASAMKDLCFEL 797

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
             +      +L+G   E KA +   ++++LL     NA  + + +      GGGGG+P  
Sbjct: 798 AAQ-SPNTFLLLGAQYEGKALLACYISKELLTEKSLNAGQVVK-TLGQYIQGGGGGQPFF 855

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           A +GG N     +AIA    F+
Sbjct: 856 ATAGGKNPEGIAEAIAHAKDFI 877


>gi|222153358|ref|YP_002562535.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|222114171|emb|CAR42689.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 873

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 348/931 (37%), Positives = 513/931 (55%), Gaps = 92/931 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKHMSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y ED +++  W  IS L  D    I   +NFW +   GP GP +EIF
Sbjct: 117 WFAFPKEKLYMTYYPEDMDSYNRW--IS-LGVDPSHLIPLEENFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGM 228
           FD+GE       G        E +RYIEIWN+V  QF    +  + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I   E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIISEVEKLSGKPYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG TE  +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMESYYPEILEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIIKREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS---------GTTEKIWFSLKEKYGA 454
           +    G   ID   F  A++EQ+ RARA  +  GS         G TE   FS +E+   
Sbjct: 411 LAEDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGITEASVFSYEEE--- 466

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
                                        LT  +S IV    ++ ++V E   GQ + +V
Sbjct: 467 ----------------------------TLTANLSVIV-VDNERSDMVSE---GQAL-LV 493

Query: 515 FDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           FD+TPFYAE GGQ+ D G    D   I  ++TDVQK   G  +H   V    L  + S V
Sbjct: 494 FDRTPFYAEMGGQVADHGVIKNDKGDILAKVTDVQKAPNGQALHTVDV-LASLSIDSSYV 552

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID++ R  +  NH+ATHLLH AL  I+G H +Q GS    + LRFD TH + +T+ EL
Sbjct: 553 LEIDHKRRYAVEKNHTATHLLHAALHNIIGDHATQAGSLNEEEFLRFDFTHFEAVTAEEL 612

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + IE+ VN  I   + V T   + + A + GA AL G KY   VRVV++     G +S  
Sbjct: 613 RRIEEEVNQQIWNAIAVNTIETDVDTAKSMGAMALFGEKYGKVVRVVTI-----GDYSVE 667

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH+S+T EI L  IV E  I +G RRI A+TGQ+A      +++ LK +A+ LK  
Sbjct: 668 LCGGTHLSNTSEIGLFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAP 727

Query: 753 Q-GNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDS 806
           Q   V  +V  + E+ R LQ       ++       DL     +   + +++  +S  D+
Sbjct: 728 QLKEVPAKVASLSEQVRDLQKENAELKEKAAAAQAGDLFKDVKEANGIRYIAKQVSVSDA 787

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             L++  D  ++K  S I++LV    EK   ++   T+D+    +A +L +  A ++  G
Sbjct: 788 GALRTFADNWKQKDYSDILVLVASIGEKVNVLVASQTKDV----HAGNLIKELAPIV-SG 842

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG+P MA +GG + ++ +  ++ VA  +K
Sbjct: 843 RGGGKPDMAMAGGSDASQIETLLSSVADKMK 873


>gi|300778975|ref|ZP_07088833.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300504485|gb|EFK35625.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 867

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 322/904 (35%), Positives = 493/904 (54%), Gaps = 85/904 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL++F+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +   QK
Sbjct: 6   IRQKFLDYFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDFFLGYKTPTAPRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKKEAIAFAWELLTEVYGIPKENLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        D D+ A+  WK  S +S D+II     DNFW M E+GPCGPCSEI  D
Sbjct: 126 VTIFEGDASENLDRDQNAYDFWK--SHISEDRIINGNKKDNFWEMGESGPCGPCSEIHID 183

Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                +   +P G+   +++  + +E+WNLVFM+F ++  +    LP   +DTGMG ER+
Sbjct: 184 LRTPEEKAAVP-GISLVNKDHPQVVEVWNLVFMEFNRKADKSLEKLPAQHVDTGMGFERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADG 289
              LQ K++NYD D+F  LI   E+++G KY G       +  RV+VDH+R+ SF IADG
Sbjct: 243 CMALQGKSSNYDTDVFTPLIAKVEELSGKKYTGILEDEKDIAIRVVVDHIRAVSFAIADG 302

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP++ G GYV+RRI+RR + Y+ R LG  EP +  L+  L  +MG  +PE+ +   L+ 
Sbjct: 303 QLPSSGGAGYVIRRILRRGISYSYRFLGMKEPFLYKLVAVLQEQMGPFFPEIEKQGKLVT 362

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E ++SE++ F  T++ GL+ ++ ++     D  ++L     F+LYDT+G P D+ + I  
Sbjct: 363 EVIKSEEDSFLNTIETGLIRVEKLIQQTIADNQKVLPTLEVFELYDTYGFPDDLTRIIAE 422

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLR 464
            +GL  ID   F    E+QR R++  S        +K+  W  L+EK     F+GYD + 
Sbjct: 423 EKGLT-IDEEGFKAEREKQRKRSQQDS-------AQKVYDWVVLEEK--PESFVGYDQIE 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
              ++   RKV                            E   G+  +VV   +PFY E 
Sbjct: 473 SETYITRYRKV----------------------------ENKDGEFYQVVLSSSPFYPEG 504

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQL 583
           GGQ+GD G         Q+ +  KK  G+ +    +  G+ +   +L    ++   R+  
Sbjct: 505 GGQVGDKGVLENAAESFQVLET-KKENGLIIS---LINGLPKDAGALFYAKVNASERKNS 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS THLLH AL  +LG+HV Q GS + PD LRFD +H   +T  E+  IE+ VN  I
Sbjct: 561 QANHSVTHLLHEALRDVLGTHVEQKGSYVGPDYLRFDFSHFNKMTEEEIALIEEKVNHKI 620

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +++ +   R +  ++A+  GA AL G KY D VR++          S  LCGGTHV +T
Sbjct: 621 KESIALQEFRSIPIQEALDKGAMALFGEKYGDNVRMIQFG------SSKELCGGTHVKNT 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI    I SE S  AGIRRIEAI+G ++  +    ++++  L+  LK    +VV  +E+
Sbjct: 675 SEIGHFKITSEGSAAAGIRRIEAISGDKSEEYFKNLEKQITELSQLLKSK--DVVRSIEK 732

Query: 763 IWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE   L+     L   K K ++     +  +  +   +    S +D+  +K ++  L+
Sbjct: 733 LIEENTSLKAEVDALKKEKAKGEIGEWKNAYEQKGNKQLLVKKTS-LDAGSVKDIVFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++I S + +++    + K  + + V++DL   + A  + +  AK + GGGGG  P  A +
Sbjct: 792 REIPSSVTIILS-DADGKPMITVGVSDDLAADYQAGAIVKDLAKEIQGGGGGN-PGFATA 849

Query: 878 GGPN 881
           GG N
Sbjct: 850 GGKN 853


>gi|260434774|ref|ZP_05788744.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412648|gb|EEX05944.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 889

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 313/767 (40%), Positives = 457/767 (59%), Gaps = 46/767 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL F+ + GH+ + S+SLIP  DPT++ T +GM+PFK +F GQ E+P  +A T+ Q
Sbjct: 20  IREAFLNFYAERGHKRMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TSSQ 77

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  + +D + L
Sbjct: 78  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVYGIDPKNL 133

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIP 184
            ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D + E   
Sbjct: 134 VVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELGN 193

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            G+    E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY
Sbjct: 194 EGI--DLEDDDRFIEFYNLVFMQYNRDAEGILTPLANRNIDTGMGLERMAQILQKVPNNY 251

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LIQA+  + G+ Y   N     + +VI DH R+ + LI DG+  +N GRGY+L
Sbjct: 252 ETDLIFPLIQAAADLAGVDYHHLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 311

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF +T
Sbjct: 312 RRLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFLET 371

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VL+   K   ++G  AF+LYDT+G PL++ Q+I   +GLA +D+  F  A
Sbjct: 372 LERGEKLLAEVLAS--KPTQISGAQAFELYDTYGFPLELTQEIAEEQGLA-VDLDGFEAA 428

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +EEQR RA+A ++ +     + I   + ++  AT F GY+ L                  
Sbjct: 429 MEEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFDGYEALDH---------------- 471

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S V+A+V  GE    A +G  V+VV D TPFY E GGQ+GD G   G  + +
Sbjct: 472 -------DSCVQALVVNGEPASTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLSGSDLIV 524

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           +I  V +  + +FVH   VERG L    ++   +D   RR+   NH+ATHLL  AL  ++
Sbjct: 525 RIESVSRSRD-VFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQVV 583

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
              + Q GS +  D LRFD      +T+ +L+ +E  +N  I +   +  + M  + A A
Sbjct: 584 DPGIGQAGSLVDFDRLRFDFHCPTAVTADQLQQVETLINGWINEAHALQVQEMAIDQAKA 643

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+ G KY D VRVV V     GV S  LCGGTHV++T EI L  IV+ES + AGIR
Sbjct: 644 AGAVAMFGEKYADLVRVVDVP----GV-SMELCGGTHVANTAEIGLFKIVAESGVAAGIR 698

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           RIEA+ G    ++L  +D  +K L    K     +V RV  + EE +
Sbjct: 699 RIEAVAGPAVLAYLNERDSVVKQLGDRFKAQPAEIVDRVAALQEELK 745


>gi|124024771|ref|YP_001013887.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|205830178|sp|A2BZG2|SYA_PROM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123959839|gb|ABM74622.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 886

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 308/768 (40%), Positives = 462/768 (60%), Gaps = 48/768 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++      T+ QK
Sbjct: 19  IREAFINFFVQHNHQKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRATSSQK 77

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ + + 
Sbjct: 78  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNPQNIV 133

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I+V+ ED EA ++WK++ G+ A++IIR+   DNFWS   TGPCGPCSE++FD    + G 
Sbjct: 134 ISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPEL-GS 192

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+  R+IE +NLVFMQ+ +  +     L    IDTGMGLERMA +LQ+K+NNY+ 
Sbjct: 193 DEIDLEDDSRFIEFYNLVFMQYNRDLEGNLEPLANCHIDTGMGLERMAQILQKKSNNYET 252

Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   LI+A+  +  ++YE  N  N    ++I DH R+ + LI DG+  +N GRGY+LRR
Sbjct: 253 DLIFPLIKAAALLAQLEYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGYILRR 312

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RL+G  +P +  L       M +AYP+L++ K +I   L+ E+ RF +TL+
Sbjct: 313 LIRRMIRHGRLVGIVQPFLPQLAEMAIELMKNAYPQLLEKKKIILNELKIEESRFLETLE 372

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG  LL  + SH  + ++++G  AF+LYDT+G PL++ ++I   +G++ +DI  F   + 
Sbjct: 373 RGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKGIS-VDINGFENEMA 429

Query: 424 EQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +QR RA+  S+ +     G+ E+   SL   +  T+F GY+ L                 
Sbjct: 430 KQRKRAKEASVSIDLTEEGSIER-EISL---FDETRFEGYEKLE---------------- 469

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   +S V  I +  E V++AV G  V+++ ++TPFYAE+GGQ+GD G      + 
Sbjct: 470 -------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGIITSQDLE 522

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + + +V+KK + IF+H  IV  G+L    S+ + +    R++ + NH+ATHLL  AL   
Sbjct: 523 VSVENVRKK-KNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKLS 581

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           + S VSQ GS ++   LRFD    KP+T  EL+ +E  +N  I ++ P+  + M  ++A+
Sbjct: 582 IDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEVRINQWINEDHPIQIKTMPIKEAM 641

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA A+ G KY D VRVV V        S  LCGGTHV+ T ++    I++E+ I +GI
Sbjct: 642 AAGALAMFGEKYGDVVRVVDVP-----GVSMELCGGTHVTRTSQLGTFKIINETGIASGI 696

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           RRIEAI G     +   +D  +K L+   KV    +V RV  +  E +
Sbjct: 697 RRIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELK 744


>gi|15645855|ref|NP_208033.1| alanyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|3024653|sp|P56452|SYA_HELPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2314404|gb|AAD08285.1| alanyl-tRNA synthetase (alaS) [Helicobacter pylori 26695]
          Length = 847

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 318/837 (37%), Positives = 466/837 (55%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+E F +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVVKECFEEEEHFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A  D+  F   
Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACADMQGFELC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKVLGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
              P                           Q+V V+ ++TPFYAE GG +GD G    D
Sbjct: 473 DANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALFKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              + I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NGEVAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERFEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q    K 
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KA 733

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + +   DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 734 PVSM---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|33239500|ref|NP_874442.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81665176|sp|Q7VEG5|SYA_PROMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33237025|gb|AAP99094.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 892

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 337/907 (37%), Positives = 507/907 (55%), Gaps = 70/907 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL F+ + GHE++PS+SL+P NDPT++ T +GM+PFK +F G +      VT+ QK
Sbjct: 20  IRAAFLNFYAERGHEIVPSASLVP-NDPTVLLTIAGMLPFKPVFLGHQDRPSARVTSCQK 78

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L    F L+   + 
Sbjct: 79  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSINVFGLNPSHIV 134

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I+++ ED+EA ++W+ + G++  +IIR+   DNFWS   TGPCGPCSE+++D    + G 
Sbjct: 135 ISIFREDDEAEQIWRDVIGVNPRRIIRMDEKDNFWSSGPTGPCGPCSELYYDFHPEL-GE 193

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+  R+IE +NLVFMQ+ + +      L   +IDTGMGLERMA +LQ   NNY+ 
Sbjct: 194 EEIDLEDDTRFIEFYNLVFMQYNRNSSGTLTSLANCNIDTGMGLERMAQILQGVANNYET 253

Query: 247 DLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   L++    +  ++YE  N     + +VI DH R+   LI DG+  +N GRGYVLRR
Sbjct: 254 DLIYPLLEKIASLIDVQYEDLNATIKASFKVIGDHTRACVHLIGDGVSASNLGRGYVLRR 313

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RL+G T+P ++ +       M SAYP+L++ + LI + L+ E+ RF +TL+
Sbjct: 314 LLRRVVRHGRLIGITKPFLVQIAEVAIELMQSAYPQLLERRQLIFKELQREETRFLETLE 373

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G  LL  +LS      ++ G+ AF+LYDT+G P+++ ++I     L  +D+  F +A++
Sbjct: 374 KGEKLLAELLSK--APSVITGEAAFELYDTYGFPVELTEEIAEENDLR-VDMKGFKKAMD 430

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RA++ ++ +     + I   + E  G T F+GY  L   +F               
Sbjct: 431 EQRRRAKSAAMTIDLTLQDTIDKVVSE-VGETNFLGYQQLE--QF--------------- 472

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--- 540
                 S V+AIV  G   +E   G K+++V + TPFY E GGQ+GD G           
Sbjct: 473 ------SQVQAIVVNGVSSQECNVGDKIDIVLNMTPFYGEGGGQIGDRGIISSASSDDSE 526

Query: 541 -LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L   D  ++ +G FVH  +V+ G+L    ++  T+D  +RR    NH+ATHLL  AL  
Sbjct: 527 CLIEIDSVRRVKGAFVHSGLVKNGVLTLGDNVQCTVDSFSRRCAQANHTATHLLQAALKK 586

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            + S ++Q GS +  D LRFD    +P++ AEL+ IE  +N  I++   +V   M+  +A
Sbjct: 587 AVDSDITQAGSLVDFDRLRFDFHFVRPVSGAELEHIEKLINGWISEAHSLVISEMSINEA 646

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY + VRVV V        S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 647 KRVGAIAMFGEKYGEVVRVVDVP-----GVSKELCGGTHVTNTAEIGLFKIVSETGIAAG 701

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEAI GQ    +L  +D  +K L+   K     +V RV  + +E + L       KL
Sbjct: 702 IRRIEAIAGQGVLDYLNDRDGVVKILSERFKAQSNEIVDRVIALQDEVKSLT------KL 755

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ-KKIQSGIIMLVGISKEKKASV 838
            +  +D      A ++  + ++S  +S+ L   +D +    IQS +  LV       A+V
Sbjct: 756 LVKAQDEVAFTKA-LSLKNKVVSLTNSQYLIERLDGVTGDAIQSVVKTLVD-ELGDNAAV 813

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSGGPNG 882
           ++    DL D+   + +A   ++++  G   G                RP+ AQ+GG + 
Sbjct: 814 VLAGMPDLNDQKKVILVAAFGSEIIAQGLHAGQFLGPIAEICGGGGGGRPNFAQAGGRDP 873

Query: 883 NKADQAI 889
            K D A+
Sbjct: 874 TKLDDAL 880


>gi|323127641|gb|ADX24938.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 872

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 344/913 (37%), Positives = 507/913 (55%), Gaps = 76/913 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  K F   +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPKWFGFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T Y +D++++  W  + G+    +I +   DNFW +   GP GP +EIFFD+G  
Sbjct: 123 EKLYMTYYPDDKDSYNRWISL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIFFDRGTE 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234
              E I   L     E +RYIEIWN+V  QF    +  + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFIEKIVK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G   LD +L+ L   GKD  L G   FKLYDT+G P+++ +++    G
Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEAGKD-TLEGKNIFKLYDTYGFPVELTEEMAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA  +  GS G   +    + E               S F
Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGITE--------------SSTF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + E   V  +   I + N          ++ E+V E   GQ + +VFDQTPFYAE GGQ+
Sbjct: 462 LYETETVDARLAVIIVDN----------ERSEVVSE---GQAL-LVFDQTPFYAEMGGQV 507

Query: 529 GDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
            D G    A GD I  ++ DVQK   G  +H   V    L  +    L ID++ R  +  
Sbjct: 508 ADRGVIKNANGD-IVARVIDVQKAPNGQALHTVDV-LASLALDTVYTLDIDHKRRYAVEK 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  I+G H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I +
Sbjct: 566 NHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIWK 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            L + T   + E A + GA AL G KY   VRVV +     G +S  LCGGTH+++T EI
Sbjct: 626 ALAITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSEI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  I+ E  I +G RRI A+TGQ+A      Q+  LK +A  LK  Q   V  +V  + 
Sbjct: 681 GLFKILKEEGIGSGTRRILAVTGQQAFESFRKQEYALKEIAHILKAPQMDQVPAKVVSLS 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819
           E+ R LQ  +A+ K +           ++ +VN + +I S+V   D+  L++  D  ++K
Sbjct: 741 EQLRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQK 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++LV    E K +VL+          +A ++ ++ A ++  G GGG+P MA +GG
Sbjct: 801 DYSEVLVLVAAIGE-KVNVLVASKS---KEVHAGNMIKVLAPIV-SGRGGGKPDMAMAGG 855

Query: 880 PNGNKADQAIAGV 892
            + +K    +A V
Sbjct: 856 SDASKISDLMAAV 868


>gi|226356938|ref|YP_002786678.1| alanyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226318928|gb|ACO46924.1| putative alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 891

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 321/861 (37%), Positives = 471/861 (54%), Gaps = 70/861 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
             S IR  FL+FF+  GH  LPS S I   DPT +FT +GM PFK+ F G     +    
Sbjct: 6   TTSQIREKFLQFFESKGHLRLPSHSTI-APDPTTLFTVAGMQPFKDQFMGAPAVFDGVAN 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + VTT QKCVR      D++NVGRT RH T FEM+GNFSFG YFK  AI  AWD LT  +
Sbjct: 65  KRVTTAQKCVRV----PDIENVGRTRRHLTLFEMMGNFSFGDYFKRDAILWAWDFLTGPE 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
              +D  ++Y+T+Y +D+EAF  W +  GL A  I R   ++NFW          GPCGP
Sbjct: 121 WMGMDPDKMYVTIYKDDDEAFGYWTQEVGLDASHIHRFDADENFWPANAPLEGPNGPCGP 180

Query: 172 CSEIFFDQGECIPGGL---PGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMS 223
           CSEI++D+G             + E  R++E+WNLVF Q+++Q+  E        LP  +
Sbjct: 181 CSEIYYDRGSNYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDPAEDGTPVLKDLPFKN 240

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+F+ ++    +++G  YEG   V+HRV+ +H+RS  
Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFRPIVDKVAELSGKPYEGEISVSHRVVAEHMRSVC 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            ++ADG   +N GRGY LR+I+RRA  +A LLG  EP +  + P +   MG AYPEL   
Sbjct: 301 MILADGTALSNTGRGYTLRKILRRASRHAYLLGMREPALYQIAPVVAAGMGDAYPELRTE 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +E  +R+E+ERF KTL+ G+  L  +LS + +   L+G+ AF LYDT+G PLD+ ++
Sbjct: 361 QGRVEAAIRAEEERFLKTLEGGIQRLGSLLSGMPQGGTLSGEEAFVLYDTYGFPLDLTKE 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIG 459
           I    G++ +D   + ++LE  ++ ARA S      L  G  E +     E   AT+F+G
Sbjct: 421 IAEEYGIS-VDEARYAESLENAQNIARAGSKYGKSELFGGNQEAL-----EGLSATEFVG 474

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +D L                            V A+V  GE +    +G +  VV  +TP
Sbjct: 475 FDHLE-----------------------AEGQVLALVGAGERLSHLSAGSEATVVLSRTP 511

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GG++GDTG    +G    + D +K   G+F+H  +VE+G L TE   V  +    
Sbjct: 512 FYGEGGGEVGDTGRLEWEGGAGMVRDTRKTPAGVFLHDVLVEQGEL-TEGVTVRGVVGPE 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  +H+ATHLLH AL  +LGS V Q GS +  D LRFD +H   +++ EL  +E  V
Sbjct: 571 RQAIQRHHTATHLLHAALRAVLGSGVRQAGSLVAADRLRFDFSHGAALSAEELSRVETLV 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGG--VHSSALCG 695
           +  I+ N PV  + M   +A A+GA AL G KY ++VRVVSVE   E GG  V S  LCG
Sbjct: 631 SRWISANFPVTWQEMPIAEAKAAGATALFGEKYGEKVRVVSVEGDVEYGGQPVSSKELCG 690

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV  TG+I    ++S+ ++ AG+RRIEA+ G+ A S +  +      +A+ L  S   
Sbjct: 691 GAHVRRTGDIGAFVLLSDENVAAGVRRIEALAGEAATSWVRERLNGTARVAALLNTSPDG 750

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--------CHKIADVNFMSHIISEVDSK 807
           +  RV  +  + +  +   A  K QL    +           ++      +  +S ++  
Sbjct: 751 LEARVTGLQAQLKAAEKEVAAVKRQLAQAQMGSSSGGGAQTRELGGFRVAALKLSGIEGN 810

Query: 808 ELKSVMDALQKKIQSGIIMLV 828
           EL+   D L  +  + +++L 
Sbjct: 811 ELRGAADKLLDQSGADLVVLA 831


>gi|328945496|gb|EGG39647.1| alanine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 872

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 344/931 (36%), Positives = 512/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAIPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVIKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   +G    ++F +TP
Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVETGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|297571413|ref|YP_003697187.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931760|gb|ADH92568.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 890

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 343/924 (37%), Positives = 524/924 (56%), Gaps = 66/924 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L++F K+ H +  S SLI   DP+++FT +GMVPF     G EK  +  + +
Sbjct: 3   TAEIRQRWLDYFAKHNHHIAESVSLI-SPDPSILFTIAGMVPFTPYIIGTEKSPHPRIAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI LA+ LLT   D    
Sbjct: 62  VQKCIRT----NDIDNVGRTTRHGTFFQMCGNFSFGDYFKEGAIDLAFGLLTSSVDEGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L++ RL++T++++D+ +F    K+ GL+   I+++   + FWS  + GP G C+EI +D
Sbjct: 118 GLEKDRLWVTIWEKDDVSFDHLTKVIGLNPRHIVKLKREEIFWSTGQPGPAGSCAEIHYD 177

Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231
           +G E  P  + G+ + G +RY+EIWNLVF Q+   E + K    +  L + +IDTG GLE
Sbjct: 178 RGPEFGPEAVGGTVDPGGDRYLEIWNLVFDQYLRGEGEGKNFPLLGELEQTAIDTGAGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ K N Y+ID    +IQA+E++TG  Y  N+   +  RV+ DH+RSS  LIADG
Sbjct: 238 RIAYLLQGKKNMYEIDEVYPVIQATERITGKTYGENDEDDILMRVVADHVRSSMMLIADG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P N+GRGYVLRR++RRA+   RLLGYT+     LLP     M  +YP L      I +
Sbjct: 298 VRPGNDGRGYVLRRLIRRAVRSVRLLGYTDVAYPELLPVTKDAMKDSYPVLEAEFDRISQ 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TL  G  + +   +   +  I L GD AF L+DT+G P+D+  ++   +
Sbjct: 358 IAYNEEQAFRRTLTAGTQIFEQAAAEAKEAGIQLPGDAAFTLHDTYGFPIDLTLEMASEK 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGA-TQFIGYDLLRGS 466
           G+A +D   F Q ++EQ+ RARA +    +G  +  ++  ++ K G  T+F+GY     +
Sbjct: 418 GIA-VDEAGFRQLMQEQKDRARADAQAKKTGHVDATVYHEIQAKSGGDTRFLGY-----T 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
            ++  D KV+                  I++ G  V  A +  ++++V DQTPF+AE GG
Sbjct: 472 DYVA-DGKVI-----------------GILKDGVSVPAAEAPAEIDIVLDQTPFWAEQGG 513

Query: 527 QLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  ++  G  + +TDVQ   +G+FVH   +  G +  + S+   ID   R Q++ 
Sbjct: 514 QLADHGTISVAGGGLVDVTDVQMPVKGLFVHRGTLTEGSIALDDSVRSAIDIPRREQIAR 573

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ATH++H AL   LG   +Q GS  +P  LRFD  H + + +  L  IE  VN+ +  
Sbjct: 574 AHTATHMVHKALHEYLGEQATQAGSENSPSRLRFDFRHGEQVPTTILHDIESRVNERLQD 633

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V   +MN E A ASGA AL G KY + VRVVS+    GG  S  LC GTHVS +G I
Sbjct: 634 NLTVSAEVMNIEAAKASGAMALFGEKYGNDVRVVSI----GGDWSRELCAGTHVSDSGAI 689

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ ++ ESSI +G+RRIEA+ GQ A +    +   L  L++   V    +   ++ +  
Sbjct: 690 GLVTVLGESSIGSGVRRIEALVGQGAYAAGARERALLSQLSTLTHVRPEELPEHIDTLLN 749

Query: 766 EYRKL-QLIHAKRKLQ-LNVEDLSCHKIADVN---FMSHIISEVDSKE--LKSVMDALQK 818
             +   + I A RK + L+       +  D+N    ++H + +V S +    +VMD L++
Sbjct: 750 RLKNADKEISALRKEKMLSAMASVLEQRTDINGIAVITHDLGDVASADDVRVAVMD-LRE 808

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
           ++ S   ++ L G++KE+    +++ T D        A  L  ++AK+L GGGGGG+P M
Sbjct: 809 RLGSTPAVVALTGVAKER--PTIVIATNDAARSKGIKAGALVSVAAKIL-GGGGGGKPDM 865

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GG +  +   A   + + + +
Sbjct: 866 AQGGGTDVTQIPHAFDAITAAIAQ 889


>gi|242092594|ref|XP_002436787.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor]
 gi|313471753|sp|C5Z7K4|SYAP_SORBI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags:
           Precursor
 gi|241915010|gb|EER88154.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor]
          Length = 961

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 347/945 (36%), Positives = 525/945 (55%), Gaps = 108/945 (11%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FLEF+   GH++LPSSSL+P +DPT++ T +GM+ FK IF G+E       TT Q
Sbjct: 67  AIRRRFLEFYAARGHKILPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKEPRRVPCATTSQ 125

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RH TFFEMLGNFSFG YFK+ A   AW+L TKE+ L   RL
Sbjct: 126 KCIRT----NDIENVGRTARHQTFFEMLGNFSFGDYFKKEATAWAWELATKEYGLPAERL 181

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +I+V+++D EAF +W    G+  ++I R+   DNFW+   TGPCGPCSEI++D     P 
Sbjct: 182 WISVFEDDNEAFDIWHNEVGVPKERIKRMGAEDNFWTSGATGPCGPCSEIYYD---FYPE 238

Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                ++ G+  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  NN
Sbjct: 239 RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNN 298

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +L++DG++P+N GRGYV
Sbjct: 299 YETDLIFPIIEKAASMAMVSYAKTDDATKTNLKIIGDHMRAVVYLVSDGVIPSNIGRGYV 358

Query: 301 LRRIMRRAMCYARLLGYTE-----------PLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +RR++RR +   RL+G              P +  ++ +L TE+    P++   +  I  
Sbjct: 359 VRRLIRRVVRMGRLIGIRGDGHGNSEGAFLPSLAEVVISLSTEID---PDVESRRRSILG 415

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E+ RF +TL+RG  LLD +L        + G    L+G   F LYDT+G P++I  
Sbjct: 416 ELQREELRFVQTLERGEKLLDELLDGAVLSAGNNGDKPSLSGKDLFLLYDTYGFPVEITA 475

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
           +I   RG+  +DI  F+  +E QR +++A  + + L  G   +I  S+ +    T F+GY
Sbjct: 476 EIASERGVT-VDIEGFDIEMENQRKQSQAAHNVVKLSVGNETEIIKSIPD----TVFLGY 530

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L                         S++V+ ++  G  V E   G +VE++ D+TPF
Sbjct: 531 DSL-----------------------SASAVVRGLLVNGNPVNEVSEGSEVEILLDRTPF 567

Query: 521 YAEAGGQLGDTGCAIGDG-------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           YAE+GGQ+GD G    +G         ++I DVQK    IFVH   +++G +     +  
Sbjct: 568 YAESGGQVGDNGFLYVNGGEDRSQAAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEVDA 627

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D + R+    +H+ATHLL  AL +++GS  SQ GS +  D LRFD    +P++  EL 
Sbjct: 628 CVDAKLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDRLRFDFNFHRPVSEGELT 687

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN  I+    + T++M  +DA  +GA A+ G KY ++VRVV V     GV S  L
Sbjct: 688 RIELLVNQWISNAAHLETKVMALQDAKNAGAIAMFGEKYGEQVRVVEVP----GV-SLEL 742

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D  ++ L S LKV  
Sbjct: 743 CGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFIDYVCARDNYMRRLCSSLKVKA 802

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---------DVNFMSHIISEV 804
            +V GRVE I EE R  +  +    L+  +  L    +A         +V  +   + +V
Sbjct: 803 EDVNGRVETILEELRATR--NEVSSLRSKIAVLKAASLASKATTVEPQNVRIVVENMGDV 860

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           D+  LKS  + L   +Q    +++G S  + K S++   +  +      V +   + K +
Sbjct: 861 DADGLKSAAEYLIGTLQDPAAVILGSSPGDGKVSLVAAFSPAV------VKMGLQAGKFV 914

Query: 864 GG------GGGGGRPHMAQSGG------PNGNKADQA--IAGVAS 894
           GG      GGGGG+P+ AQ+GG      P+  +  +A  +AGV+S
Sbjct: 915 GGIAKLCGGGGGGKPNFAQAGGRKPENLPDALEKARAEIVAGVSS 959


>gi|205830106|sp|Q0RF65|SYA_FRAAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 881

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 333/895 (37%), Positives = 483/895 (53%), Gaps = 52/895 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   T
Sbjct: 2   DTAEIRSRFLNHFARRGHTIVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLATPWPRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQK VR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++LL   F    
Sbjct: 61  SVQKVVRT----VDIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFKP 116

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+ TVY +D+EA  +W+++  L A++I R    DNFWSM   GPCGPCSEI+FD+G  
Sbjct: 117 DDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGAA 174

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237
             G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+L
Sbjct: 175 Y-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATIL 233

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N Y+ID+ + ++  + Q+TG +Y  +  + V  RV+ DH R+++ LIADG++P+NE
Sbjct: 234 QGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSNE 293

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+  ARLLG  EP+M  L  A+ T MG  YPEL+     I     +E+
Sbjct: 294 GRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAEE 353

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +TL  G  + D  +  +       L GD AFKL+DT+G P+D+  ++    GL+ +
Sbjct: 354 ASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS-V 412

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + +E QR  A+A       G  +   F  +  + GAT F GY+ L         
Sbjct: 413 DEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL--------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +GV  +V   +  G  +     G +V VV D TPFYAE+GGQ  D G
Sbjct: 464 ----------SRESGVVGLVG--IADGAGLTVVGEGDEVGVVLDATPFYAESGGQEPDFG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG  +++ DVQ+    + +H   V  G LR    +   +D   RR +S +H+ATHL
Sbjct: 512 LLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV   
Sbjct: 572 VHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPVRAF 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +  +E+A   GA AL G KY D VRVV V     G ++  LCGGTHV+S+ ++  + ++S
Sbjct: 632 VTTQEEARRLGAMALFGEKYGDAVRVVDV-----GDYARELCGGTHVASSAQLGAVKLLS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KL 770
           ESSI AG RR+E + G  A  +L  +   +  L++ LK     +  RV +I    R  + 
Sbjct: 687 ESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRDAER 746

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ---SGIIML 827
           +L   +    L           DV  ++ + +EV +      +  L   ++   +G   +
Sbjct: 747 ELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGRPAV 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           V + K   +S+++V           A +L R S   L GG GGG+P +AQ GG N
Sbjct: 807 VAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGN 860


>gi|111224623|ref|YP_715417.1| alanyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111152155|emb|CAJ63885.1| alanyl-tRNA synthetase [Frankia alni ACN14a]
          Length = 884

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 333/895 (37%), Positives = 483/895 (53%), Gaps = 52/895 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   T
Sbjct: 5   DTAEIRSRFLNHFARRGHTIVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLATPWPRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQK VR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++LL   F    
Sbjct: 64  SVQKVVRT----VDIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFKP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+ TVY +D+EA  +W+++  L A++I R    DNFWSM   GPCGPCSEI+FD+G  
Sbjct: 120 DDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGAA 177

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237
             G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+L
Sbjct: 178 Y-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATIL 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N Y+ID+ + ++  + Q+TG +Y  +  + V  RV+ DH R+++ LIADG++P+NE
Sbjct: 237 QGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSNE 296

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+  ARLLG  EP+M  L  A+ T MG  YPEL+     I     +E+
Sbjct: 297 GRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAEE 356

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +TL  G  + D  +  +       L GD AFKL+DT+G P+D+  ++    GL+ +
Sbjct: 357 ASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS-V 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + +E QR  A+A       G  +   F  +  + GAT F GY+ L         
Sbjct: 416 DEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL--------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +GV  +V   +  G  +     G +V VV D TPFYAE+GGQ  D G
Sbjct: 467 ----------SRESGVVGLVG--IADGAGLTVVGEGDEVGVVLDATPFYAESGGQEPDFG 514

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG  +++ DVQ+    + +H   V  G LR    +   +D   RR +S +H+ATHL
Sbjct: 515 LLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTATHL 574

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV   
Sbjct: 575 VHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPVRAF 634

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +  +E+A   GA AL G KY D VRVV V     G ++  LCGGTHV+S+ ++  + ++S
Sbjct: 635 VTTQEEARRLGAMALFGEKYGDAVRVVDV-----GDYARELCGGTHVASSAQLGAVKLLS 689

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KL 770
           ESSI AG RR+E + G  A  +L  +   +  L++ LK     +  RV +I    R  + 
Sbjct: 690 ESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRDAER 749

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ---SGIIML 827
           +L   +    L           DV  ++ + +EV +      +  L   ++   +G   +
Sbjct: 750 ELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGRPAV 809

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           V + K   +S+++V           A +L R S   L GG GGG+P +AQ GG N
Sbjct: 810 VAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGN 863


>gi|237651172|ref|ZP_04525424.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
          Length = 872

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 343/925 (37%), Positives = 501/925 (54%), Gaps = 82/925 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I   E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I       Y  +Q   
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                                        S +V  +    E+   AVS     ++F +T 
Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498

Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  + +   I   +T+VQK   G  +H   V    L       L ID 
Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L V T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE + E+ R+LQ  +A  K K              +VN   +I S+V   D+  L++
Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRT 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D  ++K  S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+
Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MA +GG N  K  + +  VA  L
Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872


>gi|325688315|gb|EGD30334.1| alanine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 872

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 343/931 (36%), Positives = 512/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  +++ +             + AIV     VE   +G    ++F +TP
Sbjct: 459 ------SAFNYEKEELIAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDKAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    ++D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKSKDV----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|325694024|gb|EGD35942.1| alanine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 872

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 344/931 (36%), Positives = 510/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   +G    ++F +TP
Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+ DVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVKDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           Y  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 YSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|327468935|gb|EGF14407.1| alanine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 872

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ++RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRSGFEAAMKEQQNRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   +G    ++F +TP
Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVETGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGKLVAQVTDVQKAPNGQPLHTVEV-FAPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY  +VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKKVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ             A  ++  +V++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQETNGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|319947816|ref|ZP_08022010.1| alanyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438540|gb|EFV93466.1| alanyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 859

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 330/891 (37%), Positives = 476/891 (53%), Gaps = 68/891 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F + GH  +PS+SL+  +DP L+F N+GMVPFK  F GQE P Y   T++QK
Sbjct: 6   IRRRFLDHFVRAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGQETPPYATATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           CVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT   D     +D
Sbjct: 65  CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIRHAWSLLTSSLDDGGFGID 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L++TVY +D+EA+ +W+ + G+  ++I R    DN+WSM   GPCGPCSEIF+D+G 
Sbjct: 121 PALLWVTVYLDDDEAYGIWRDVIGVPEERIQRRGMADNYWSMGVPGPCGPCSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E  + + ++ F     LPK +IDTGMG+ER+A
Sbjct: 181 AY--GVDGGPEADEDRYIEIWNLVFMQNERGEGSGKDSFEILGPLPKQNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
            +LQ   N Y+ DL + +I  +E+++G KY  ++   V  RVI DH R++  LI+DG+ P
Sbjct: 239 FLLQGVENVYETDLLRPVIDTAERLSGAKYGADSASDVRFRVIADHARTAYMLISDGVTP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGY+LRR++RR +   RLLG T   M   +  +   +G ++PE +     IE    
Sbjct: 299 GNEGRGYILRRLLRRIVRSVRLLGATGETMAEFMATVRDAIGPSFPETVSGYERIERIAV 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+  F KTL+ G  L +       +    +L+G  AF L+DTHG P+D+  ++    GL
Sbjct: 359 AEEAAFLKTLESGTQLFERAAESARRSGAAVLSGQQAFALHDTHGFPIDLTLEMASEAGL 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   + EQR+RA+A S        +   +      G T F G+          
Sbjct: 419 Q-VDEEGFRSLMSEQRARAKADSQAKKHAHADLSVYRDFLDAGETVFTGF---------- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                       DLT+   S +  IV  G+ V  A  G +VE V D+TPFYAE+GGQLGD
Sbjct: 468 -----------TDLTD--ESRLLGIVSGGQAVPVAREGDEVEFVLDRTPFYAESGGQLGD 514

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G     G ++++ DVQK  + +++H  ++  G +     +   +D + R+  +  HSAT
Sbjct: 515 RGMISTAGFQMRVDDVQKIGKKLWIHKGVLTGGEVEAGQIVTAAVDPEWRKGATQGHSAT 574

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  ILG    Q GS   P  +RFD   S  I +  L  IE+  N  +  +  V 
Sbjct: 575 HLVHAALRQILGPEAVQAGSLNKPGYMRFDFNWSGSIPADVLAQIEEVTNSAVDADYGVN 634

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T     ++A   GA AL G  Y   VRVV +    GG  S  LCGGTHVSS+ +I  + +
Sbjct: 635 TIETTLDEAKRMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVSSSAQIGPVSL 690

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---------- 760
           + E+S+ +GIRR+EA  G  A  H   +   +  LA+ LK     +  R+          
Sbjct: 691 LGEASVGSGIRRVEAYVGMDAYRHQARERALVSGLATSLKAPADELPDRIAALTAKLRET 750

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E+  E  R  QL      L  + EDL       V F++H      + +L+++   L+ ++
Sbjct: 751 EKALESLRAAQLASQAGDLLASAEDLDG-----VRFLAHSAPGGAAGDLRTLASDLKGRL 805

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
            S  G+++L    ++K   V+ V          A DL +  +  LG  GGG
Sbjct: 806 GSDAGVVLLTAPGQDKVPFVIAVTPAAQERGLRAGDLVKAISPALGARGGG 856


>gi|300741580|ref|ZP_07071601.1| alanine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380765|gb|EFJ77327.1| alanine--tRNA ligase [Rothia dentocariosa M567]
          Length = 893

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 331/920 (35%), Positives = 502/920 (54%), Gaps = 73/920 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   ++EFF+K GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQK
Sbjct: 6   ISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT   D     LD
Sbjct: 65  CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDEGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++T+Y+ D EAF +W K  G   ++I R+   +N+WS  + GP GP SEIF+D+G 
Sbjct: 121 PERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGLERMAT 235
              G   G + + +RYIEIWNLVFMQ+++     +E F     LPK +IDTG+G+ER+A 
Sbjct: 181 AY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGVERLAM 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286
           +LQ   N Y+ D  + ++ A+ +++G KY G+         + V  RV+ DH+RSS  LI
Sbjct: 240 LLQGVENFYESDQVRPVLDAASKLSGKKYHGSESPEDLGYEDDVRMRVVADHIRSSLMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +      
Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVADDFER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F  T++ G   L+  ++   ++    ++G  AF L+DT+G P+D+  ++
Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVATAKENGSNSVSGAEAFALHDTYGFPIDLTLEM 419

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G+  +D  +F + + EQR RA+A +               K K GA      DL  
Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADA---------------KAKKGAFA----DLSE 459

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
             K + E   +      +       + ++A+++ G  V  A +G K+EVV D+TPFYAE 
Sbjct: 460 LRKLVDERGSIFTGYTELR----TETHLRALLKDGVSVPVAKAGDKIEVVLDETPFYAEG 515

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G       +V  +D Q RR   
Sbjct: 516 GGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQRRRDGE 575

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  N  I 
Sbjct: 576 KAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVANLAIR 635

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N  V+ R M   +A A GA +L G KY + VR+V +    GG  S  LCGGTHV ++ E
Sbjct: 636 DNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHVGTSSE 691

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NV 756
           I  L +++E S+ +G RR+EA+ G  +  HL  +   +  L   +KV             
Sbjct: 692 IGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPEKINQT 751

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMD 814
           + +++   +E  KL+    + KLQ     L  +   I  V  ++H   E+D+  ++S+  
Sbjct: 752 LAKLKSAEKELEKLR----REKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLAL 807

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRP 872
            L+ +  S   ++          V++V T +        A  L RL+A VL GGGGGG+ 
Sbjct: 808 DLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAASVL-GGGGGGKD 866

Query: 873 HMAQSGGPNGNKADQAIAGV 892
            +AQ GG + +K  +A+  +
Sbjct: 867 DVAQGGGQDASKVSEALDAI 886


>gi|317178465|dbj|BAJ56253.1| alanyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 847

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 319/833 (38%), Positives = 466/833 (55%), Gaps = 56/833 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y   +F GY+               C K  
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNVYAPNEFAGYETTE-----------CCAKAL 461

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
               +    I            EA   Q+  V+ ++TPFYAE GG +GD G  + D    
Sbjct: 462 GFFDSDFKEIT-----------EANPNQEAWVLLEETPFYAEGGGAIGDRGALLKDNEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A  
Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVSFKEV-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q      K  +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVMAGINKLKESVKNSQ------KAPV 735

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 736 SV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKNKHERLLAMVFKKENER 784


>gi|225868896|ref|YP_002744844.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|225702172|emb|CAW99880.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 872

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 340/917 (37%), Positives = 508/917 (55%), Gaps = 76/917 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGEA 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 YDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGQAYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKIIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G   LD +L+ L   G+D  L+G   FKLYDT+G P+++ +++    G
Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEKGQDR-LDGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA ++  GS G   +    + E               S+F
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQNETLAGITEP--------------SEF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + E             T  V+S +  I+   E  E    GQ + +VFDQTPFYAE GGQ+
Sbjct: 462 LYE-------------TETVASRLSVIIVDNERSEMVSEGQAL-LVFDQTPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   L  ++ DVQK   G  +H   V    L  +    L ID++ R  +  N
Sbjct: 508 ADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEV-LASLALDTVYTLAIDHKRRYAVEKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I + 
Sbjct: 567 HTATHLLHAALHKVIGKHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWKA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ EI 
Sbjct: 627 LAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  + E
Sbjct: 682 LFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSLSE 741

Query: 766 EYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819
           + R LQ       ++       D+   K+ + N + +I SEV   D+  L++  D  +++
Sbjct: 742 QIRDLQKEIAELKEKAAAAQAGDV-FKKVQEANDLRYIASEVSVSDAGALRTFADNWKQR 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L   S  +K +VL+   +    R +A +L +  A ++  G GGG+P MA +GG
Sbjct: 801 DYSDVLVLAA-SIGEKVNVLVASKD---KRAHAGNLIKALAPIV-SGRGGGKPDMAMAGG 855

Query: 880 PNGNKADQAIAGVASFL 896
            + +K  + +A V   L
Sbjct: 856 SDASKLSELLAAVPEHL 872


>gi|324990574|gb|EGC22510.1| alanine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 872

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 343/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + A+V     VE   SG    ++F +TP
Sbjct: 459 ------SAFNYEKEELTAE-------------LLAVVADDAAVESVESGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           +V++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQETNGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|322372372|ref|ZP_08046908.1| alanine--tRNA ligase [Streptococcus sp. C150]
 gi|321277414|gb|EFX54483.1| alanine--tRNA ligase [Streptococcus sp. C150]
          Length = 872

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 337/916 (36%), Positives = 507/916 (55%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++LIP NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLIPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT    FD  +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS +F I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDNM-SFKVIADHIRSLAFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGKIMESYYPEVLEKKDFIEKIVK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G  +LD +L++L   GKD +   D+ FKLYDT+G P+++ +++    G
Sbjct: 358 REEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS              G       ++   S+F+
Sbjct: 417 FK-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFL 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            ED                 S +  IV      +   SGQ + +VF+QTPFYAE GGQ+ 
Sbjct: 463 YEDE-------------AAESRLSVIVADDARHDTVNSGQAL-LVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           D G  I D    +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  N
Sbjct: 509 DHGT-ISDAAGTVVARVVDVQRAPNGQPLHTVEVE-GELVVGANYKLEIDHTRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  I+G+H  Q GS    + LRFD TH + +TS EL++IE+ VN+ I + 
Sbjct: 567 HTATHLLHAALHNIIGNHAVQAGSLNEQEFLRFDFTHFEAVTSEELRAIEEQVNEEIWKA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI 
Sbjct: 627 TPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E
Sbjct: 682 MFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           +   LQ  +A  K +            + + N + +I S+V   D+  L++  D  ++  
Sbjct: 742 QLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQAD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L     EK   ++   ++D+    +A ++ ++ A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLAAHIGEKVNVLVASKSKDV----HAGNVIKVLAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           + N     ++ VA  L
Sbjct: 857 DANGIQDLLSAVAEQL 872


>gi|308177509|ref|YP_003916915.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744972|emb|CBT75944.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 896

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 327/913 (35%), Positives = 498/913 (54%), Gaps = 68/913 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+  Y   T+VQK
Sbjct: 6   IARRWVDFFVSKGHTAVPSASLVSA-DPSLLFTVAGMVPFIPYLTAREEAPYSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R G    D++ VG+T RH TFF+M GNFSFG YFK+ AI  AW+LLT       + LD
Sbjct: 65  CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKKEAIHFAWELLTSSLEDGGYGLD 120

Query: 122 QRRLYITVYDE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           + RL++TVY++    D EA ++W+   G+ A++++     DN+W+  + GP GPCSEI++
Sbjct: 121 KERLWVTVYEDGDEKDTEARRIWEDEIGMPAERVVGTGKEDNYWNTGQPGPGGPCSEIYY 180

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLE 231
           D+G    G   G + +  RY+EIWNLVFMQ+     + +        LPK +IDTG+GLE
Sbjct: 181 DRGPAY-GMEGGPAVDETRYVEIWNLVFMQYRLSAVRSKTDFDVAGELPKRNIDTGLGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNH------RVIVDHLRSS 282
           R+A +LQ   N Y+ D  + ++  + ++  + Y   E     NH      R+I DH+RSS
Sbjct: 240 RLAMILQGVENMYETDQVRPVLDKAAELASVTYTSTEDPADPNHATDVRLRMIADHIRSS 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             LI+D + P NEGRGYVLRR++RRA+   RL+G    ++  LLP     M   YPE+  
Sbjct: 300 LMLISDQVTPGNEGRGYVLRRLIRRAVRAMRLMGVDSEVLPELLPVSRDAMKGVYPEVEA 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401
               I     +E+  F +T+  G   LD  L H  ++ + L+GD AF L+DT+G P+D+ 
Sbjct: 360 DFERIARIAYAEERAFRRTIASGTTRLDEALGHAKEEGKNLSGDDAFALHDTYGFPIDLT 419

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            +I    GL+ +D   F + + EQR+RA+  +    +G  +   ++   + G   F GYD
Sbjct: 420 LEIAAEAGLS-VDEPRFRELMNEQRTRAQKDAKAKKAGHADLSVYNKLAEAGNVHFTGYD 478

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L G                        S ++ I++ G++V  A  GQ++++V ++TPFY
Sbjct: 479 TLEGE-----------------------SSIRGIIRDGQLVPFAEQGQEIDLVLNETPFY 515

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE+GGQ GD+G   GDG  L++TDVQ   +G+ VH  +V  G L  E  +   +D   RR
Sbjct: 516 AESGGQAGDSGLITGDGFVLEVTDVQAPVKGLNVHKVVVREGELPAEALVRTQVDAMRRR 575

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                HSATHL+H AL  +LG   +Q GS      LRFD + ++ +++A    +E+ VN 
Sbjct: 576 SGEQAHSATHLVHAALRELLGPTATQAGSFNKAGYLRFDFSWAEALSAAARSEVEEVVNL 635

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  N  VVT  M   +A   GA +L G KY++ VRVV    E  G  S  LCGGTHV +
Sbjct: 636 AITSNYQVVTNEMALSEAKKLGAMSLFGEKYSNDVRVV----EMNGDWSRELCGGTHVDT 691

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T  I  L ++SE+S+ +G RR+EA+ G  A  H   +   +  L+   +V    V  RV 
Sbjct: 692 TARIGQLTLLSEASVGSGNRRVEALVGMEAFRHGAAERALVSELSGLFRVPSSQVSERVN 751

Query: 762 EIWEEYR--KLQLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKE-LKSVMDA 815
           +   + +  + Q+   K +  L        K   I     ++H    +DS + L+++   
Sbjct: 752 DTVAKLKAAEKQIAELKSQAMLAQSAALLEKVVTIGSTRLLAHNAGAIDSADALRTMALD 811

Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           L+ K+  ++ +I+L+G++  +   + +   E   + F A  L R +  VL GGGGGG+  
Sbjct: 812 LRGKLGSEAAVIVLIGVANGRPLVLAVTNDEARANGFKAGALVRTATGVL-GGGGGGKDD 870

Query: 874 MAQSGGPNGNKAD 886
           MAQ GG + +K D
Sbjct: 871 MAQGGGQDASKID 883


>gi|50914453|ref|YP_060425.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|59798488|sp|Q5XBH1|SYA_STRP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50903527|gb|AAT87242.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 872

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 334/918 (36%), Positives = 505/918 (55%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P++++++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELIEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|304383973|ref|ZP_07366429.1| alanine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304334865|gb|EFM01139.1| alanine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 875

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 324/921 (35%), Positives = 494/921 (53%), Gaps = 91/921 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR ++ +FF++ GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G   P  +     
Sbjct: 7   NEIRDSYKKFFEEKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTGNPEPRRRADS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     LD + 
Sbjct: 67  QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDYAWEYLVDVLQLDPKD 126

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+TV+        + D EA   W+K   L AD II+   +DNFW M +TGPCGPCSEI 
Sbjct: 127 LYVTVFEGSPEEQLEYDSEAASYWEK--HLPADHIIKGNKHDNFWEMGDTGPCGPCSEIH 184

Query: 177 FD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            D    Q +    G    +++  + IEIWN+VFMQ+ ++       L    IDTGMG ER
Sbjct: 185 LDSRTPQEKAEISGAALVNKDNPQVIEIWNIVFMQYVRKANGALEPLSMKVIDTGMGFER 244

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +   LQ K +NYD D+F+ +I+   +++G+ Y  E    V  RV+ DHLR+ +F IADG 
Sbjct: 245 LVRALQGKNSNYDTDIFQPIIREITKLSGITYGAEEQTDVAMRVVADHLRAVAFSIADGQ 304

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL   + LI  
Sbjct: 305 LPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFLHRLLPVLIKEMGDAYPELPAQRELIGR 364

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++ E++ F +TL++G+ LL   +  +  +  ++L+G  AF+L+DT+G PLD+ + ++C 
Sbjct: 365 VMKEEEDSFLRTLEKGINLLTAEIERMQTEGRKVLDGVQAFRLFDTYGFPLDLTE-LICR 423

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
                +D   FN  +++Q+ RAR       +      W +L++  G  QF+GYD      
Sbjct: 424 EHGYSVDEAQFNAEMQKQKDRARN-----AAQVENSDWVALRQ--GEQQFVGYDYTEHEC 476

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            +   RKV  +K                                E+V D TPFY E GGQ
Sbjct: 477 HILRYRKVTQKK----------------------------NTYFELVLDYTPFYGEMGGQ 508

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG  + +   +++ D  K+     +H  IV       E + +  +D + R   + NH
Sbjct: 509 VGDTGVLVSEDETVEVIDT-KRENNQSIH--IVSALPKNLEANFMACVDTEKRAASAANH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL + L  +LG HV Q GS ++ D LRFD +H + +T  EL+ +E  VN +I Q++
Sbjct: 566 TATHLLDYVLKQVLGEHVEQKGSYVSADTLRFDFSHFQKVTDDELRQVERMVNAMIRQDI 625

Query: 648 PVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P+   R    E+A   GA +L G KY D+VRVV          S   CGG H +STG I 
Sbjct: 626 PLDEHRDTPIEEAKQMGAISLFGEKYGDKVRVVRFG------PSCEFCGGIHAASTGRIG 679

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           +  IVSESS+ AGIRRIEA+TG+         ++ L+ + +       N    +  + E+
Sbjct: 680 MFKIVSESSVAAGIRRIEALTGKLCEEMFYSVEDTLRDIKALF-----NNAKDLRTVLEK 734

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-------------SHIISEVDSKELKSVM 813
           Y     +     ++  +E      +  +  M                +  ++++  K ++
Sbjct: 735 Y-----MDEHDNMRREIEQFQAQAVERMKSMLIERAVERRGIKVVKAVLPIEAQVAKDLV 789

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871
             +++ I   ++ +VG +  +K  + I++++D++   + NA  + R +AK++ GGGGGG+
Sbjct: 790 FKIREAIPQHLLCVVGSTAHEKPLLSIMLSDDMVKEQQLNAGQMVREAAKLI-GGGGGGQ 848

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           PH A +GG N +  + AI  V
Sbjct: 849 PHYASAGGKNLDGINAAIDKV 869


>gi|194476839|ref|YP_002049018.1| alanyl-tRNA synthetase [Paulinella chromatophora]
 gi|171191846|gb|ACB42808.1| alanyl-tRNA synthetase [Paulinella chromatophora]
          Length = 891

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 341/906 (37%), Positives = 518/906 (57%), Gaps = 67/906 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF K GH+ + S+ LIP +D T++ T +GM+PFK IF G+E+P   + T+ 
Sbjct: 16  AEIREAFLDFFAKRGHQRMASALLIP-DDSTVLLTIAGMLPFKPIFLGREQPPALSATSS 74

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVG+T RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F LD   
Sbjct: 75  QKCIRT----NDIENVGKTARHHTFFEMLGNFSFGNYFKEQAIIWAWELSTEVFGLDPAN 130

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++++ ED EA  +W+ + G++  +IIR+   DNFW+    GPCGPCSEI++D    + 
Sbjct: 131 LVVSIFQEDNEAALIWQNLIGVNPKRIIRMGAKDNFWASGPIGPCGPCSEIYYDFHPDL- 189

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G    + E+  R+IE +NLVFM+    ++     L   +IDTGMGLERMA +LQ+K+NNY
Sbjct: 190 GHDDINLEDDSRFIEFYNLVFMESNCDSQGNLTPLENKNIDTGMGLERMAQILQKKSNNY 249

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+ +  + G+ Y   N    ++ +VI DH R+ S LI DG+  +N GRGY+L
Sbjct: 250 ETDLIFPLIKKAASLAGIDYSEVNEKGKISLKVIGDHSRAISQLICDGVSASNLGRGYIL 309

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG  +  ++ +  A    M  AYP+L + + +I   L  E+ RF +T
Sbjct: 310 RRLLRRVVRHGRLLGINDHFLVAMGEASIELMSKAYPQLEEKRDIILNELAQEEARFLET 369

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  +L    +++ ++G+ AF+LYDT+G PL++ Q+I    G   +D+  F  A
Sbjct: 370 LERGEKLLSDILK--SENQQISGEQAFELYDTYGFPLELTQEITQEHGRT-VDVAGFEVA 426

Query: 422 LEEQRSRARAHSLGLGS---GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ QR RA+   + +      T E I  S+K     T F GY++L        DR   CQ
Sbjct: 427 MKAQRQRAKEAIVTIDPTLRSTIEGIAESIK----PTLFFGYEVL--------DRS--CQ 472

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V A++ + E+V+EA +G  V+V+ D TPFY E+GGQ+GD G  +G  
Sbjct: 473 -------------VVALIVKDELVQEASTGDVVKVILDGTPFYGESGGQVGDRGMLLGSE 519

Query: 539 IR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + I +   + +G+F+H   +++G LR    ++  +D   RR+   +H+ATHLL 
Sbjct: 520 TEKTSLIVIIENVSRNQGLFIHSGRIKKGTLRIGDLVIAKVDTHLRRRAQAHHTATHLLQ 579

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++ + +SQ GS +  D LRFD ++   I+  +L+ IE+ +ND I +   V    M
Sbjct: 580 SALKQLVDASISQAGSLVDFDRLRFDFSYPGAISLEKLEKIENLINDWINEIHRVEVTEM 639

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A  +GA A+ G KY   VRVV++        S  LCGGTHVS+TGEI L  I+SE+
Sbjct: 640 KLEQAKVNGAIAMFGEKYGAYVRVVNIPNV-----SMELCGGTHVSNTGEIGLFKIISET 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR------ 768
            + +GIRRIEAI G     +L  +D  +K L    K     V+ RV  + +E +      
Sbjct: 695 GVASGIRRIEAIAGTAVLPYLNDRDRLVKELGDHFKAPPSEVMVRVIALQDELKTTNKAL 754

Query: 769 ---KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              + +LI AK  +  +  +L    + D   +    + V +  L +    LQ+++     
Sbjct: 755 LTARSELISAKSAILASQVEL----VGDFQILVSSFTGVQAALLSTAAKQLQEQLGDNTA 810

Query: 826 MLVG-ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L+G I +E K S +    +D++ R  NA  +    AK L GGGGGGR ++AQ+GG N  
Sbjct: 811 VLLGSILEEGKVSFVAAFGKDVVQRGLNAGKVVNHIAK-LCGGGGGGRANLAQAGGRNLK 869

Query: 884 KADQAI 889
             + A+
Sbjct: 870 SFESAL 875


>gi|116512579|ref|YP_811486.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123320246|sp|Q02XE9|SYA_LACLS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116108233|gb|ABJ73373.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 872

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 336/914 (36%), Positives = 498/914 (54%), Gaps = 71/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI  AW+LLT    F+   
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEFPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEI 178

Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 GL   +E  E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLERM 
Sbjct: 179 YDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N+D DLF  +I+  E+++G+ Y  ++  ++ +VI DH+RS SF I DG LP 
Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGITYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + +  
Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  L+D +L +L   GKD I   D+ F+LYDT+G P+++ +++    G 
Sbjct: 359 EEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADI-FRLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F  A++ Q+ RARA  +  GS              GA       +   SKF+ 
Sbjct: 418 K-IDHEGFKVAMKAQQDRARAAVVKGGS-------------MGAQNETLSSIEVDSKFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           ED+K   +             +   ++  E+V+E V+G K ++VFD TPFYAE GGQ+ D
Sbjct: 464 EDKKSQAK-------------LLVAIKDDELVDE-VTG-KAQLVFDVTPFYAEMGGQVAD 508

Query: 531 TGC-AIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G     DG  +  + DVQ    G  + H++     L+   +  L ID + R  +  NH+
Sbjct: 509 HGVIKNADGQEVATVLDVQHAPHGQNL-HSVETTSPLKVGETYTLEIDEERRSAVVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+L 
Sbjct: 568 ATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSLK 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T +I L 
Sbjct: 628 VETIETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSQIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            I+ E  I +G+RRI A+TGQ+A       +  L  +A  +K  Q + +V +V  + +E 
Sbjct: 683 KIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDEL 742

Query: 768 RKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q  +     KL  +  D    +  +   V+F++  ++  D+  L+++ D  ++K  S
Sbjct: 743 KAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDANGLRNLADIWKQKELS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++LV    EK + ++   + D+     A +L +  A  +  G GGG+P MA +GG N 
Sbjct: 803 DVLVLVATIGEKVSLLVASKSSDV----KAGNLVKELAPFV-DGRGGGKPDMAMAGGSNA 857

Query: 883 NKADQAIAGVASFL 896
               + +  VA  L
Sbjct: 858 AGIPELLTAVAEKL 871


>gi|125624689|ref|YP_001033172.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|205830128|sp|A2RME6|SYA_LACLM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124493497|emb|CAL98475.1| AlaS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071483|gb|ADJ60883.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 872

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 340/914 (37%), Positives = 497/914 (54%), Gaps = 71/914 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI  AW+LLT    F+   
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEFPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEI 178

Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 GL   +E  E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLERM 
Sbjct: 179 YDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N+D DLF  +I+  E+++G  Y  ++  ++ +VI DH+RS SF I DG LP 
Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + +  
Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  L+D +L +L   GKD I   D+ F+LYDT+G P+++ +++    G 
Sbjct: 359 EEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADI-FRLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             I+   F  A++ Q+ RARA  +  GS              GA       +   SKF+ 
Sbjct: 418 K-IEHEGFKVAMKAQQDRARAAVVKGGS-------------MGAQNETLSSIEVDSKFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           ED+K   +             +   ++  E+V+E V+G K ++VFD TPFYAE GGQ+ D
Sbjct: 464 EDKKAQAK-------------LLVAIKDDELVDE-VTG-KAQLVFDVTPFYAEMGGQVAD 508

Query: 531 TGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G     DG +   + DVQ    G  + H++     L+   +  L ID + R  +  NH+
Sbjct: 509 HGVIKNADGQVVATVLDVQHAPHGQNL-HSVETISPLKVGETYTLEIDEERRSAVVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  I+G+H  Q GS    + LRFD TH   ++  EL  IE  VN++I Q+L 
Sbjct: 568 ATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQSLK 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T       A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI L 
Sbjct: 628 VETIETYIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767
            I+ E  I +G+RRI A+TGQ+A       +  L  +A  +K  Q + +V +V  + +E 
Sbjct: 683 KIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDEL 742

Query: 768 RKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  Q  +     KL  +  D    +  +   V+F++  ++  D+K L+++ D  ++K  S
Sbjct: 743 KAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKELS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            I++LV    EK   V ++V    LD   A +L +  A  +  G GGG+P MA +GG N 
Sbjct: 803 DILVLVATIGEK---VSLLVASKSLD-VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSNA 857

Query: 883 NKADQAIAGVASFL 896
               + +  VA  L
Sbjct: 858 AGIPELLTAVAEKL 871


>gi|237752004|ref|ZP_04582484.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376571|gb|EEO26662.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 963

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 338/987 (34%), Positives = 509/987 (51%), Gaps = 145/987 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +LEFF+  GH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P  +  T+ Q
Sbjct: 6   IRALYLEFFKSKGHQVYESMPLVP-DDASLLFTNAGMVQFKDIFTGKIPTPKQRRATSAQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  L
Sbjct: 65  LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKDAIAYAWEFVTEVLGFDKSVL 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+T+++ D+EAF+LW K   + + +I R+   DNFW M +TGPCGPCSEIF DQG E   
Sbjct: 125 YVTIHESDDEAFELWCK--HIDSSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGAEFFN 182

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+A +L+ K +N+
Sbjct: 183 GEEDYFGGDGDRFLEIWNLVFMQYERSADGSLKPLPKPSIDTGMGLERVAALLEGKRSNF 242

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  +F  LI   E ++   Y   +  + RVI DH R+ +FL+A G+    EGRGYVLRRI
Sbjct: 243 DSSIFMPLIHKVESLSKQTYVYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRRI 302

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG  +  +  ++  +C  MG  Y  L + K  ++E  ++E+ERF +T++ 
Sbjct: 303 LRRAVRHGYLLGLRKAFLYEVVGVVCDTMGGHYGYLKERKNAVQEQCKAEEERFFETIES 362

Query: 365 GLVLLDGVLSHL------------------------------------GKDEILN----- 383
           G+ L +  +  L                                    G D   N     
Sbjct: 363 GMALFNKEIQTLKAKTNTKAFGLNNDNAEAVEMRNCGFQGGDEGSYLEGNDRASNAESAI 422

Query: 384 ---------GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
                    G+VAFKLYDT+G PLD+ QD+L   GL  +D+ SF + ++EQ+ R++AH  
Sbjct: 423 HRSNATRFSGEVAFKLYDTYGFPLDLTQDMLRELGL-DVDMQSFEKCMQEQKDRSKAHWK 481

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
           G G    +  + +L  ++G   F+GY+ +                        V S + A
Sbjct: 482 GSGDSAKDGDFNALLSEFGENAFVGYENV-----------------------SVESKILA 518

Query: 495 IVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-------------- 539
           ++    + VE   +GQ+  V+ + TPFY E+GG +GD G  +G  +              
Sbjct: 519 LLDSSFKRVESLGAGQEGWVMLESTPFYPESGGPVGDKGFLLGHSVLSDKSGGASYCSLQ 578

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMS-----LVLTIDYQNRRQLSINH-SATHL 592
             L ++  Q      F   ++  +   + + S     +   +D Q    L+++   AT +
Sbjct: 579 RTLSVSHSQDLHNPDFSSQSLECQDSHKVDSSSPQNIVAKVLDTQKYFGLNLSKVVATSM 638

Query: 593 L-------------------HH--------ALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           L                   HH        AL  ILGSH++Q GS +  + LRFD +H K
Sbjct: 639 LKAGDLVKAQVDSSRFEIAKHHSATHLLHYALRQILGSHIAQAGSLVETNRLRFDFSHPK 698

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            + + EL+ IE  VN  IA++ P V   M   +A A GA AL G KY + VRV+S     
Sbjct: 699 ALNTDELEQIEALVNSKIAESSPQVCETMGITEAKAKGAMALFGEKYGENVRVISFG--- 755

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               S  LCGG H+ +T EI   YIV ESS+ +G+RRIEA+ G+ A  +     E +K  
Sbjct: 756 ---DSIELCGGIHIQNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYHYGKNALESIKQA 812

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
              LK    +++  + ++ E+ ++L+      K     + L    +  V  ++  +   D
Sbjct: 813 KEALKAQ--DIIQGIFKLKEQIKELK--EKASKSSTGAKTLESKMLNGVKLIALKLENTD 868

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLG 864
           +KE K ++D  + + +   I+L+    E    V I    + +  +  A    +  A++L 
Sbjct: 869 TKEAKELVDNAKNENEKVAILLI---TESSGKVTITAGVKGVESKLKAGAWVKQVAQIL- 924

Query: 865 GGGGGGRPHMAQSGGP--NGNKADQAI 889
           GG GGGR   A +GG   + NK  +A+
Sbjct: 925 GGNGGGRDDFATAGGKITDSNKIKEAL 951


>gi|323436121|ref|ZP_01050628.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|321496436|gb|EAQ38546.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 870

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 348/915 (38%), Positives = 492/915 (53%), Gaps = 76/915 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FLEFF+   H ++ S+ ++  +DPTLMFTN+GMVPFK  F G   P    +T  QK
Sbjct: 6   VRKQFLEFFKSKNHSIVASAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNSRLTDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT+   +D+  +Y
Sbjct: 66  CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKVDKDSIY 125

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +++++ DE        EA+ +W K   +   +II     DNFW M   GPCGPCSEI  D
Sbjct: 126 VSIFEGDESEGLERDQEAYDIWTK--HIDESRIINGNKKDNFWEMGAQGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               + +    G    + +    IEIWNLVFMQ+ +        LP   +DTGMG ER+ 
Sbjct: 184 IRSAEEKAAVDGKSLVNMDHPLVIEIWNLVFMQYNRLANGSLTKLPNQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGIL 291
            VLQ   +NYD D+F  L++  E +T  K    E  +I   RVI DH+R+ SF IADG L
Sbjct: 244 MVLQGVQSNYDTDVFTPLMREVETITSSKCGETEETDIA-VRVIADHVRAVSFSIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K LI   
Sbjct: 303 PSNTGAGYVIRRILRRAIRYGFTFLDTKEPFIYKLVSTLVNQMGDAFPELEAQKNLITNV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +R E+  F +TLD+GL+LLD V+++   D + +GD AF+LYDT+G P+D+   IL  + L
Sbjct: 363 IREEEASFLRTLDKGLILLDNVIANTSGDTV-SGDKAFELYDTYGFPIDLTALILSEKNL 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F  AL+EQ+ R+RA      +      W  L+E     +FIGYD L  S  + 
Sbjct: 422 K-LDEAGFEAALKEQKDRSRA-----ATKVETDDWNILQED-SEEEFIGYDTLEASIKIT 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
             RK   +K                            G+  ++VF+ TPFY E GGQ+GD
Sbjct: 475 RYRKTESKK---------------------------DGELYQLVFNLTPFYPEGGGQVGD 507

Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHS 588
            G      G  + I D  KK   + +H A   + + R TE +    +D + R + + NH+
Sbjct: 508 KGYLETPSGEVVYIIDT-KKENNLIIHLA---KNLPRSTEGTFKAVVDVKQRSRTAANHT 563

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH  L  ILG+HV Q GS +    LRFD +H   +TS ELK +ED VN  I +NL 
Sbjct: 564 ATHLLHQGLRKILGTHVEQKGSMVHSRNLRFDFSHFSKVTSEELKEVEDFVNARIRENLS 623

Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   R +  + AI  GA AL G KY D VR +          S  LCGGTHV +TG+I  
Sbjct: 624 LEEQRGIPYDQAIQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDIWH 677

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I SE ++ +GIRRIEAIT   A+ +   + E    + + LK +Q  V      + E  
Sbjct: 678 FKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPVKAITSLLDENA 737

Query: 768 RKLQLIHA--KRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              + + A  K K Q    DL+     I  V+F++  + ++D+  +K++   L +  +  
Sbjct: 738 ALKKQVEALIKEKAQNLSGDLAKEFEDIDGVDFLAKKV-DLDAGAIKNLAFKLGEN-KDN 795

Query: 824 IIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + +L G  +  KA +   ++++L+     NA  + R   K +  GGGGG+P  A +GG N
Sbjct: 796 VFLLFGTEQNGKALLSCYISKELVASKNLNAGTVVRELGKHI-QGGGGGQPFFATAGGKN 854

Query: 882 GNKADQAIAGVASFL 896
               D AIA V ++L
Sbjct: 855 PAGIDAAIAEVKNYL 869


>gi|297380421|gb|ADI35308.1| alanyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 847

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 316/830 (38%), Positives = 463/830 (55%), Gaps = 64/830 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G+  +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVC-VDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
              P                           Q+V V+ ++TPFYAE GG +GD G    D
Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGTLFKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 DEEAAMVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGPHVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNTQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+  + LK    +V+  + ++ E  +  Q      
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ------ 731

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           K  ++V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+
Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV 777


>gi|195977801|ref|YP_002123045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974506|gb|ACG62032.1| alanyl-tRNA synthetase AlaS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 872

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/918 (37%), Positives = 508/918 (55%), Gaps = 78/918 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGEA 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 YDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKIIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G   LD +L+ L   G+D  L+G   FKLYDT+G P+++ +++    G
Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKAKGQDR-LDGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA ++  GS G   +    + E               S+F
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQNETLAGITEP--------------SEF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + E             T  V+S +  I+   E  E    GQ + +VFDQTPFYAE GGQ+
Sbjct: 462 LYE-------------TETVASRLSVIIVDNERSEMVSEGQAL-LVFDQTPFYAEMGGQV 507

Query: 529 GDTGCA---IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
            D G      GD +  ++ DVQK   G  +H   V    L       L ID++ R  +  
Sbjct: 508 ADHGVIKNDKGDPV-ARVIDVQKAPNGQPLHTVEV-LASLALNTVYTLAIDHKRRYAVEK 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  I+G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I +
Sbjct: 566 NHTATHLLHAALHKIIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWK 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            L + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ EI
Sbjct: 626 ALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  + 
Sbjct: 681 GLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSLS 740

Query: 765 EEYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQK 818
           E+ R LQ       ++       D+   K+ + N + +I SEV   D+  L++  D  ++
Sbjct: 741 EQIRDLQKEIAELKEKAAAAQAGDV-FKKVQEANDLRYIASEVSVSDAGALRTFADNWKQ 799

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  S +++L   S  +K +VL+   +    R +A +L +  A ++  G GGG+P MA +G
Sbjct: 800 KDYSDVLVLAA-SIGEKVNVLVASKD---KRAHAGNLIKALAPIV-SGRGGGKPDMAMAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K  + +A V   L
Sbjct: 855 GSDASKLSELLAAVPEHL 872


>gi|261366901|ref|ZP_05979784.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282571016|gb|EFB76551.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 886

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 325/844 (38%), Positives = 470/844 (55%), Gaps = 49/844 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P +DP+L+  NSGM P K  F GQE+P    V
Sbjct: 4   TGLNELREKYLHFFETKGHLRLGSFPLVPKDDPSLLLINSGMAPMKKWFLGQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LTKE ++ 
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTKELEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LYI+VY +D+EA+ +W K  G+  D ++R    DNFW    +GPCGPCSEI++D+G 
Sbjct: 120 ADKLYISVYLDDDEAYDIWTKKVGIPEDHMVRFGKEDNFWEHG-SGPCGPCSEIYYDRGP 178

Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF QF+   K     LP+ +IDTGMGLER+A V+Q+
Sbjct: 179 EHGCGKPTCKVGCDCDRYMEIWNLVFSQFDSDGKGHYERLPRPNIDTGMGLERLACVMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D    ++   E+++G  Y     + ++ RVI DH+RS+ F+++DGILP+NEGR
Sbjct: 239 VGNLFEVDTVASVLHHVERISGKHYGDSEKDDISIRVITDHIRSTVFMVSDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG   P +  L+  +     + YPEL + +  I++ + +E+ER
Sbjct: 299 GYVLRRLLRRAARHGRMLGIDRPFLTELVDTVIESSEAGYPELREHESYIKKVVGTEEER 358

Query: 358 FGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           FG+T+D GL +L+ ++       + +L+G   FKL DT G PLD+ ++I    G   +D 
Sbjct: 359 FGRTIDAGLNILNNMIDERKAAGETVLSGSEVFKLNDTFGFPLDLTKEIAAEAGFT-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            +F+  + +QR RARA  L    SG +  ++  L  +   TQF GY+ L       E  K
Sbjct: 418 EAFHAEMTKQRERARAERLAKDISGWSADLFGELAAE--PTQFDGYETLH------ETAK 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V       +L + +     A  + GE      S + V VV D+TPFYAE GGQ+ D G  
Sbjct: 470 VQALSDGEELADAI-----ATDEAGE------SKEGVLVVLDRTPFYAEMGGQVADYGYI 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +L++T V+K  +G FVH   +  G ++    +   +D   R  +  NH+ATHLL 
Sbjct: 519 ASGDAKLKVTQVKKTPKGYFVHTCELLDGTIKVGDEVTAFVDEARRMAICRNHTATHLLQ 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS        FD TH   +T  EL  +E  VN+ I  +LPVV + +
Sbjct: 579 KALREVLGEHVHQAGSYQDDKITHFDFTHFSAVTPEELTEVERRVNEKIFASLPVVIQNL 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY   VRVV     D G  S+  CGGTHV +T +I    I+SES
Sbjct: 639 PIEEAKKMGAMALFGEKYGSVVRVV-----DAGGWSTEFCGGTHVQNTSQIGCFKILSES 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYRKL 770
           S+ AGIRRIEA TG      L   DE+   LA      + N    V  R E +  E ++ 
Sbjct: 694 SVAAGIRRIEATTGFGVLRLL---DERTDVLAKTAAALKANNLKDVADRAEAMAAELKET 750

Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825
             QL   K ++     D      ADV+    +S  ++   +  L+ ++D ++ K  + + 
Sbjct: 751 NKQLDGLKAEMAAAKVDGLFENAADVDGVRIISAYLTGTGADTLREMVDKVRDKAPNAVT 810

Query: 826 MLVG 829
           +LVG
Sbjct: 811 VLVG 814


>gi|295132657|ref|YP_003583333.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294980672|gb|ADF51137.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 869

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 339/917 (36%), Positives = 508/917 (55%), Gaps = 79/917 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FLEFFQ   H ++PS+ ++  +DP+LMFTN+GMV FK  F G   P    VT  QK
Sbjct: 6   IRKSFLEFFQGKSHSIVPSAPMVLKDDPSLMFTNAGMVQFKEFFLGNSVPKNTRVTDSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT +F +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAINWAWELLTHKFKIDKDSLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V++         D EA ++WKKI  +  D+II     DNFW M + GPCGPCSEI  D
Sbjct: 126 VSVFEGSEEDGVGLDTEALEIWKKI--VPEDRIIYGNKKDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               + +    G    + +  + +EIWNLVFMQF ++       LP   IDTGMG ER+ 
Sbjct: 184 IRSPEEKAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEELPAKHIDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q K +NYD D+F  LI   E++T   Y   E  NI   RVI DH+R+ +F IADG L
Sbjct: 244 MVMQGKQSNYDTDVFTPLITEIEKITNSSYGTSEETNIA-IRVIADHVRAVAFSIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP +  L+    ++MG A+PEL++ + LIE  
Sbjct: 303 PSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVDCTKSQMGEAFPELVKQQQLIENV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F +TL++GLV+L+ +++   KD+ ++G  AF+LYDT G P+D+   IL  +G 
Sbjct: 363 IKEEELSFLRTLEQGLVMLENIVTQ-SKDKEISGVKAFELYDTFGFPIDLTALILKEKGY 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + ++I  F   L++Q+ R+RA +  + SG  E+I      +     F+GYD L     + 
Sbjct: 422 S-LNIAEFEAELKKQKERSRA-ATQVSSGDWEEI-----NEVDEDAFVGYDQLETQVKIA 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           + RKV  +K                            G   ++VF +TPFY E GGQ+GD
Sbjct: 475 KYRKVETKK---------------------------QGTLYQIVFTKTPFYPEGGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       ++ I D +K++  I +H A  ++       S    +D   R + + NH+AT
Sbjct: 508 KGYLTSGEEKISIIDTKKESNQI-IHFA--KKLPQNISGSFTAVVDASARTKTAANHTAT 564

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV- 649
           HLLH AL  ILG+HV Q GS + P+ +RFD +H   ++S E++ +E  VND I + L + 
Sbjct: 565 HLLHQALRHILGTHVEQKGSMVQPNYMRFDFSHFSKLSSEEIEKVEQFVNDRIQEGLQLE 624

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             R +  + A+  GA AL G KY D VR +          S  LCGGTHV +T +I    
Sbjct: 625 EQRNIAYQHALDQGAIALFGEKYGDSVRAIRFG------ESMELCGGTHVKNTADIWYFK 678

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I  ES++ +GIRRIEAITG   + +   Q E L+ +   LK ++ + V  +  + +E   
Sbjct: 679 ITGESAVASGIRRIEAITGDAVKEYFTKQTELLEEVQGLLKNAK-DPVKAISGLQDENAD 737

Query: 770 LQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
           L+     L+  K K   N++    ++I ++N +  +  +V  D+  +K +   L  +I  
Sbjct: 738 LKKQVEALLKDKTK---NLKSEIKNEIQEINGIQFLAKKVDLDAGGIKDLAFQLGGEIDD 794

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            + +L G  ++ KA +   ++++L++    NA  + R   K +  GGGGG+P  A +GG 
Sbjct: 795 -LFLLFGTEQKGKALLSCYISKELVETKDLNAGTIVRELGKYI-QGGGGGQPFFATAGGK 852

Query: 881 NGNKADQAIAGVASFLK 897
           N     +A+     +++
Sbjct: 853 NPAGIPEALKEAKKYIE 869


>gi|15675313|ref|NP_269487.1| alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910945|ref|YP_282495.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|20532260|sp|Q99Z57|SYA_STRP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13622492|gb|AAK34208.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71853727|gb|AAZ51750.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 872

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 334/921 (36%), Positives = 505/921 (54%), Gaps = 74/921 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + +K  + +A VA  +
Sbjct: 852 MAGGSDASKIAELLAAVAEIV 872


>gi|188589293|ref|YP_001920519.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|251779892|ref|ZP_04822812.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|205830029|sp|B2V3W2|SYA_CLOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188499574|gb|ACD52710.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|243084207|gb|EES50097.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 879

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 321/908 (35%), Positives = 511/908 (56%), Gaps = 56/908 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  + +R  +L+FF+   H  L S SL+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FTKTNDLRDAYLKFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPKKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKCVR G    D+DNVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT   +L
Sbjct: 63  ITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVLEL 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F + 
Sbjct: 119 PKEKLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFSRT 177

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V+Q
Sbjct: 178 DEVPTNSEKFVELSDEDKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296
            K + ++ID  +++++    +  +KY E N I V+ R+I DH+RS +F+I+D I+P+NEG
Sbjct: 238 NKNSIFEIDTLENILKEVGNLANVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  +  + +L   +  + GSAY +L   K  I++ ++ E++
Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCGSAYSDLEAKKDYIKKVIKIEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD G+ +L+ ++S L    +++L G   FKLYDT G P+++ ++IL    L+ +D
Sbjct: 358 KFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEDLS-LD 416

Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              F++ ++EQR RAR+     + +G    T + I   ++     T F GY+        
Sbjct: 417 EDGFHKEMKEQRERARSARKTSNYMGTDVKTLDVISGEIE-----TTFDGYE-------- 463

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                           + + + VK +V   +     + G    VV D TPFYAE GGQ+G
Sbjct: 464 ---------------NDSLIAEVKTLVNGEDFTNSIIEGNNAVVVTDVTPFYAEMGGQIG 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D  + ++ D +K   G  +H      G L+    + L +D   R  +  NH+A
Sbjct: 509 DTGTIYNDNFKGKVLDTKKNIGGKIIHFVEAISGELKVGDKVKLEVDNARRENIKRNHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LGSHV Q GS ++ D LRFD +H + +   EL  +E  VN+ I    PV
Sbjct: 569 THLLDAALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T  M+ ++A  SGA  +   KY ++VRVV       G +S  LCGGTH+ +TG+I L  
Sbjct: 629 NTTEMDLQEAKNSGAVGIFDDKYAEKVRVVC-----AGEYSKELCGGTHIDNTGKIGLFK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEY 767
           I+SE+ I AG RRIEA+TG  A   +  + E LK ++  LK S+  +  ++++     + 
Sbjct: 684 IISENGIAAGTRRIEAVTGIEAYKWVNEKAELLKHISGKLKCSEKEITIKLDQQSKEIKE 743

Query: 768 RKLQLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++ ++ + K K   + + D+  S   +  +N +++ +++VD + L+ + + ++ K+ + +
Sbjct: 744 KEKEITNLKSKFASMEINDIINSVKDVKGINVVTYALTDVDGEALRGLCEKVRDKVNNSL 803

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +L   S + K  +  +  ++ + +          A  + GGGGGGRP MAQ+GG    K
Sbjct: 804 TLLTS-SIDGKVVICAMADKEAVSKGAHCGKVIKEAATILGGGGGGRPDMAQAGGKLPEK 862

Query: 885 ADQAIAGV 892
              A+  V
Sbjct: 863 ISDALDSV 870


>gi|71903788|ref|YP_280591.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|83305861|sp|Q48SS4|SYA_STRPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71802883|gb|AAX72236.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 872

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 334/918 (36%), Positives = 504/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  +G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|209559623|ref|YP_002286095.1| alanyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|209540824|gb|ACI61400.1| Alanyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 872

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 334/918 (36%), Positives = 504/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|28895717|ref|NP_802067.1| alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|73919472|sp|Q878X3|SYA_STRP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28810966|dbj|BAC63900.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 872

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 334/921 (36%), Positives = 505/921 (54%), Gaps = 74/921 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + +K  + +A VA  +
Sbjct: 852 MAGGSDASKIAELLAAVAEIV 872


>gi|332044324|gb|EGI80518.1| alanyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 871

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 339/917 (36%), Positives = 493/917 (53%), Gaps = 77/917 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+TFL FF+K  H ++PS+ ++  +DPTLMF N+GMVPFK  F G  +P    +T  QK
Sbjct: 6   IRSTFLNFFEKKKHSIVPSAPMVLKDDPTLMFVNAGMVPFKEYFLGNSEPKNTRLTDSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDILY 125

Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           +TV+         D D EA+ +WK+   +S D+I++    DNFW M E GPCGPCSEI  
Sbjct: 126 VTVFEGSEDSDKLDMDTEAYDIWKQY--ISEDRILKGNKKDNFWEMGEQGPCGPCSEIHV 183

Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D    + +    G    + +  + +EIWNLVFMQ+ ++       LP   IDTGMG ER+
Sbjct: 184 DIRSAEEKAKVNGKDLVNMDHPQVVEIWNLVFMQYNRKANGSLEGLPNKHIDTGMGFERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291
             VLQ   +NYD D+F  +I+  E +T  +Y  N   +   RVI DH+R+ +F IADG L
Sbjct: 244 CMVLQNVQSNYDTDVFTPIIREIETITDKEYNKNEKTDIAIRVISDHVRAVAFSIADGQL 303

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K LIE  
Sbjct: 304 PSNTGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVDVLSDKMGEAFPELKTQKQLIENV 363

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F +TLD+GL+LLD ++      E+L   V F+L DT+G P D+   IL  +G 
Sbjct: 364 IKEEETSFLRTLDQGLLLLDRIIETTKGKEVLGAKV-FELKDTYGFPEDLTDLILREKGY 422

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              ++  FN  LE+Q+SR R  S  L S      W +L E     +FIGYD L  +  + 
Sbjct: 423 T-YNVEEFNAELEKQKSRGRESS-ALKSDD----WTTLVED-AEQEFIGYDALEANVKIT 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
             RKV  +K                            G+  ++VF+ TPFYAE GGQ+GD
Sbjct: 476 RYRKVTSKK---------------------------DGEMYQLVFNLTPFYAEGGGQVGD 508

Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G    A GD + +  T   KK   + +H A      L      V  +D + R +   NH
Sbjct: 509 KGYLEDAHGDVVYILDT---KKENNVIIHFAKNLPKHLNETFKAV--VDAKQRYRTECNH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH  L  +LG+HV Q GS +    LRFD +H   +T+ +L+ +ED VN  I   L
Sbjct: 564 TATHLLHQGLREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTNEQLQEVEDFVNRRIDGKL 623

Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            +   R +  + AI  GA AL G KY D VR +          S  LCGGTHV +T +I 
Sbjct: 624 ELEENRNVPMDQAIEDGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVKNTSDIW 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGRVEEI 763
              IVSE ++ +GIRRIEAIT    +       +   ++KSL +  K  +  +V    E 
Sbjct: 678 HFKIVSEGAVASGIRRIEAITSDAVKDFYAENSKVFSEMKSLLNNAKDPKEALVKLQTEN 737

Query: 764 WEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +  ++++ +   +   L  E + +  +I  V F++  + ++D+  +K V   L +K   
Sbjct: 738 NDLKKQIESLLKDKAKNLKAELENNLTEINGVQFLAEKV-DLDASGIKDVAFDLGQK-HK 795

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            + ++ G     KA +   ++++L+     NA  + R   K++  GGGGG+P  A +GG 
Sbjct: 796 NLFLIFGADTGGKALLTCYISKELVAEKGLNAGTVVRELGKLI-QGGGGGQPFFATAGGK 854

Query: 881 NGNKADQAIAGVASFLK 897
           N     +A+     +++
Sbjct: 855 NPEGIQEALNEAKKYIQ 871


>gi|225870098|ref|YP_002746045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225699502|emb|CAW93052.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 872

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 341/916 (37%), Positives = 507/916 (55%), Gaps = 74/916 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGEA 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 YDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKIIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G   LD +L+ L   G+D  L+G   FKLYDT+G P+++ +++    G
Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEKGQDR-LDGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              ID   F  A++EQ+ RARA ++  GS G   +    + E               S+F
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQNETLAGITEP--------------SEF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + E             T  V+S +  I+   E  E    GQ + +VFDQTPFYAE GGQ+
Sbjct: 462 LYE-------------TETVASRLSVIIVDNERSEMVSEGQAL-LVFDQTPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   L  ++ DVQK   G  +H   V    L  +    L ID++ R  +  N
Sbjct: 508 ADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEV-LASLALDTVYTLAIDHKRRYAVEKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I + 
Sbjct: 567 HTATHLLHAALHKVIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWKA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ EI 
Sbjct: 627 LAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  + E
Sbjct: 682 LFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDILKEIAHTLKVPQIEQLPSKVVSLSE 741

Query: 766 EYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  +   K K           K+ + N + +I SEV   D+  L++  D  +++ 
Sbjct: 742 QLRDLQKEMAELKEKAAAAQAGDVFKKVQEANGLRYIASEVSVSDAGVLRTFADNWKQRD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L   S  +K +VL+   +    R +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLAA-SIGEKVNVLVASKD---KRAHAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           + +K  + +A V   L
Sbjct: 857 DASKLSELLAAVPEHL 872


>gi|77410746|ref|ZP_00787105.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77163282|gb|EAO74234.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 872

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 334/926 (36%), Positives = 505/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
           +    G   ID   F  A++EQ+ RARA      S+G+ + T   I    +  YGA    
Sbjct: 411 LAEDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGIVEESRFDYGA---- 465

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                      + + S +  I+   E  E    GQ + +VF QT
Sbjct: 466 ---------------------------DSLESNLSVIIADNERTEAVSEGQAL-LVFAQT 497

Query: 519 PFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G    D      ++ DVQK   G  +H   V    L    +  L I+
Sbjct: 498 PFYAEMGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEIN 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE
Sbjct: 557 KERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I  +L + T   + E A   GA AL G KY   VRVV +     G +S  LCGG
Sbjct: 617 QEVNEQIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           TH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +
Sbjct: 672 THLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKD 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELK 810
              +V+ + +  R LQ  + + K +              +   V F++  +   D+  L+
Sbjct: 732 AAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG + +K  + +A VA  L
Sbjct: 847 KPDMAMAGGSDASKIAELLAAVAENL 872


>gi|262527561|sp|A4W221|SYA_STRS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 872

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/923 (37%), Positives = 511/923 (55%), Gaps = 78/923 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +T+  G    + ++  L   GK EI   D+ FKLYDT+G  +++ ++
Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462
           +   RG+  +DI  F  A++EQ+ RARA  +  GS G   +   ++ E+  +T   G   
Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  S                     +S IV    +      EAVS  +  +VFDQTPFYA
Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501

Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           E GGQ+ D G    A GD I   + DVQK   G  +H   +   I     +  L I+ + 
Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ V
Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I   +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV
Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  
Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813
           +VE + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  
Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFA 794

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  ++K  S +++LV    +K   ++   + D+    +A +L ++ A ++  G GGG+P 
Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           MA +GG + +     +  VA+ L
Sbjct: 850 MAMAGGSDASAIQTLLNSVANNL 872


>gi|87123480|ref|ZP_01079331.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917]
 gi|86169200|gb|EAQ70456.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917]
          Length = 911

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 350/899 (38%), Positives = 510/899 (56%), Gaps = 68/899 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ++      T+ QK
Sbjct: 39  IREAFLAFYEQRGHQRIASASLVP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSSQK 97

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L  + L 
Sbjct: 98  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSPKNLV 153

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185
           ++V+ ED+E   +W+   G++  +IIR+   DNFW+   TGPCGPCSEI++D + E    
Sbjct: 154 VSVFREDDEGEAIWRDRVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELGDD 213

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           G+    E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   NNY+
Sbjct: 214 GI--DLEDDSRFIEFYNLVFMQYNRDAEGTLTPLENRNIDTGMGLERMAQILQAVPNNYE 271

Query: 246 IDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   LI+ + Q+ G+ Y   +G    + +VI DH R+ + LI DG+  +N GRGY+LR
Sbjct: 272 TDLIYPLIETAAQLAGVAYPALDGKGKTSLKVIGDHSRAITQLIGDGVTASNLGRGYILR 331

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF +TL
Sbjct: 332 RLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERREVILAELQREEARFLETL 391

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  VL+   K + ++G  AF+LYDT+G PL++ ++I    GL  +D+  F  A+
Sbjct: 392 ERGEKLLADVLA--AKPKQISGAQAFELYDTYGFPLELTEEIAEEHGLT-VDLDGFEAAM 448

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           E QR RA+A ++ +     E I   +     AT F GY+LL                   
Sbjct: 449 EAQRQRAKAAAVSIDLTLQEAI-DQVAADLEATAFRGYELLE------------------ 489

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD----- 537
                 SS V A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G   GD     
Sbjct: 490 -----QSSCVVALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDGPDGH 544

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ + I  V +    +FVH   +ERG+L     +   +D   RR+   NH+ATHLL  AL
Sbjct: 545 GLIVAIEAVSRN-RSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAAL 603

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   + Q GS +  D LRFD    + +T+AEL+ IE  +N  I++   +  + M  E
Sbjct: 604 KQVVDPGIGQAGSLVDFDRLRFDFHCPRAVTAAELEQIEALINGWISEAHSLEVQEMAIE 663

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IVSES + 
Sbjct: 664 TAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSESGVA 718

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775
           AGIRRIEA+ G    ++L  +D  +K L    K     +V RV ++ +E +  Q  L+ A
Sbjct: 719 AGIRRIEAVAGPAVLAYLNERDAVVKQLGERFKAQPAEIVDRVVQLADELKASQKALVAA 778

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG-IIMLVGIS 831
           + +L L        +   V     +++ +D  E   L+S    L  ++  G  ++L G+ 
Sbjct: 779 REELALAKSAALAGQAVAVGAHQLLVARLDGVEGGGLQSAAQGLVDQLGDGAAVVLGGLP 838

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLGG------GGGGGRPHMAQSGGPNG 882
                  +I+V       F    ++R   + K +GG      GGGGGRP++AQ+GG +G
Sbjct: 839 DPGDLGKVILVAA-----FGKAVISRGQQAGKFIGGIAKVCGGGGGGRPNLAQAGGRDG 892


>gi|317177983|dbj|BAJ55772.1| alanyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 847

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 319/837 (38%), Positives = 466/837 (55%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCG CSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGSCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L + K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKEFKEMVLKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G+  +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVR-VDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           +  P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGVLLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKET-----SIELCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        + ++LK+    LK    +V+  + ++ E  +  Q      
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKIALK--NNDVMAGINKLKESVKNSQ------ 731

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K  ++V DL   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|223933644|ref|ZP_03625622.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897674|gb|EEF64057.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 872

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/923 (37%), Positives = 510/923 (55%), Gaps = 78/923 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIDIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +T+  G    + ++  L   GK EI   D+ FKLYDT+G  +++ ++
Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462
           +   RG+  +DI  F  A++EQ+ RARA  +  GS G   +   ++ E+  +T   G   
Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  S                     +S IV    +      EAVS  +  +VFDQTPFYA
Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501

Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           E GGQ+ D G    A GD I   + DVQK   G  +H   +   I     +  L I+ + 
Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ V
Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I   +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV
Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  
Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813
           +VE + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  
Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFA 794

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  ++K  S +++LV    +K   ++   + D+    +A +L ++ A ++  G GGG+P 
Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           MA +GG + +     +  VA  L
Sbjct: 850 MAMAGGSDSSAIQTLLNSVAENL 872


>gi|116071953|ref|ZP_01469221.1| alanyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116065576|gb|EAU71334.1| alanyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 887

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 332/891 (37%), Positives = 506/891 (56%), Gaps = 53/891 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL F+Q+ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ++      T+ 
Sbjct: 18  AEIRAAFLCFYQERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSS 76

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ F +D + 
Sbjct: 77  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVFGIDPKH 132

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183
           L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D + E  
Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELG 192

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G+    E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  NN
Sbjct: 193 DEGI--DLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPNN 250

Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 251 YETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 310

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR + + RL+G   P ++ +  A    +  A+P +++ + +I   L+ E+ RF +
Sbjct: 311 LRRLLRRVVRHGRLIGINRPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFLE 370

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F +
Sbjct: 371 TLERGEKLLSEVLDS--KPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFEE 427

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E+QR RA+A ++ +   T +     +     AT F GY +L              ++P
Sbjct: 428 AMEQQRQRAKAAAVSIDL-TLQDAIDQVVATQNATAFQGYQVL--------------EQP 472

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  + 
Sbjct: 473 ---------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADVI 523

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + I  V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  +
Sbjct: 524 VAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQV 582

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +   + Q GS +  D LRFD    + +T+ +L+ IE  +N  IA+   ++   M  + A 
Sbjct: 583 VDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLEQIETLINGWIAEAHGLLVEEMAIDQAK 642

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV ES + AGI
Sbjct: 643 AAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVGESGVAAGI 697

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +     LI A+ +
Sbjct: 698 RRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQAE 757

Query: 779 LQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----IS 831
           L +        K   I     +   +  VD   L+    +L  ++  G  +++G     S
Sbjct: 758 LAVAKSAALATKAVAIGSFQLLVERLDGVDGAGLQGAAQSLAAQLGDGAAVVLGGLPDPS 817

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            + K  ++    +D++           +   L GGGGGGRP++AQ+GG +G
Sbjct: 818 DQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGGGRPNLAQAGGRDG 868


>gi|324993321|gb|EGC25241.1| alanine--tRNA ligase [Streptococcus sanguinis SK405]
          Length = 872

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 344/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   SG    ++F +TP
Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|288918208|ref|ZP_06412563.1| alanyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288350378|gb|EFC84600.1| alanyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 880

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 305/772 (39%), Positives = 435/772 (56%), Gaps = 47/772 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   T
Sbjct: 2   DTAEIRRRFLNHFSERGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFVGDLTAPWSRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQKCVR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++L+T+ +  + 
Sbjct: 61  SVQKCVRT----VDIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELVTEGYGFNP 116

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181
             L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G E
Sbjct: 117 DDLWATVYLDDDEAESIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGPE 174

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATV 236
               G P + E+  RY+EIWNLVFMQ+ +    E        LP  +IDTGMGLERMAT+
Sbjct: 175 YGRDGGPEADED--RYLEIWNLVFMQYARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  +    V  RV+ DH R+++ LI+DG+ P+N
Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGARYGADPAADVRLRVVADHTRTAAMLISDGVSPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  LL  +   MG  YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMAELLAEVRQAMGPIYPELVDQAEAITAVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  
Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSAQLSGESAFRLHDTYGFPIDLTIDMAADAGLT- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   F  +    G T F GY     ++  +E
Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGY-----TELTRE 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +GV  IV   +  G        G++V +V D TPFYAE GGQ  D 
Sbjct: 467 --------------SGVVGIVG--IGDGSSRVAVGEGEEVGIVLDTTPFYAEGGGQEADL 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    DG   ++ DVQ+    + +H   V RG LR    + + +D + RR +S +H+ATH
Sbjct: 511 GVIRFDGGECEVLDVQRPVADLVMHRVKVLRGELRVGADVAVEVDVERRRAVSRSHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN++  ++L V  
Sbjct: 571 LVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEVALRDLEVRW 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +  + +A   GA AL G KY D+VRVV V     G ++  LCGGTHVSS+ ++  + ++
Sbjct: 631 YVTTQAEARRLGAMALFGEKYGDQVRVVDV-----GDYARELCGGTHVSSSAQLGAIKLL 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           SESSI AG RR+EA+ G  A   L  +   +  L++ LK     +  RV +I
Sbjct: 686 SESSISAGTRRVEALVGIDAFRFLAREHVLVSQLSTALKARPDELTDRVADI 737


>gi|77413130|ref|ZP_00789330.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77160831|gb|EAO71942.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 872

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 333/921 (36%), Positives = 502/921 (54%), Gaps = 74/921 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWXIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNXNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  + + K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + +K  + +A VA  L
Sbjct: 852 MAGGSDASKIAELLAAVAENL 872


>gi|89890332|ref|ZP_01201842.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89517247|gb|EAS19904.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 873

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 338/907 (37%), Positives = 497/907 (54%), Gaps = 86/907 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+F++   HE++ S+ ++  NDPTLMF N+GM PFK  F G     Y  +   QK
Sbjct: 6   IRQTFLDFYKSKQHEVVASAPMVIKNDPTLMFVNAGMNPFKEYFLGINDSKYSRIADSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDCLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        + D EA+  WK++  ++ D+I+     DNFW M + GPCGPCSEI  D
Sbjct: 126 VTIFEGDTSENLERDTEAYDYWKEL--IAEDRILNGNKKDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               + +    G    + +  + +EIWNLVFMQ+++        LP   +DTGMG ER+A
Sbjct: 184 IRTAEEKAAVDGASLVNADHPQVVEIWNLVFMQYKRMADGSLKNLPAQHVDTGMGFERLA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q   +NYD D+F  LI+  E +TG  Y   E  +I   RVI DH+R+ SF IADG L
Sbjct: 244 MVMQGVQSNYDTDVFTPLIREIETITGHAYGKTEQEDIA-IRVIADHVRAVSFSIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K LI   
Sbjct: 303 PSNNGAGYVIRRILRRAIRYGFTYLNKKEPFIYMLVNTLSKQMGDAFPELKSQKNLILNV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E++ F + LD+GLVLLD +++    +   I++G+ AF+LYDT+G P+D+   IL  +
Sbjct: 363 IKEEEQSFLRALDQGLVLLDSMITAAKSNSQNIIDGNKAFELYDTYGFPIDLTALILREK 422

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F +A+  Q+ R+RA      S TT   W  L+      +FIGYD L     
Sbjct: 423 GME-LDEAGFEKAMAAQKQRSRA-----ASETTTSDWTELRSD-DTQEFIGYDKLEADVR 475

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +   RKV  +K                            G   ++VF+ TPFY E+GGQ 
Sbjct: 476 ISRYRKVTTKK---------------------------DGDLYQLVFNMTPFYGESGGQT 508

Query: 529 GDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GD G      GD I +  T   KK  G  VH  + +      E S    +D   R + S 
Sbjct: 509 GDKGYLESPSGDTIYIIDT---KKENGQTVH--LTKNLPKDLEGSHKAVVDANQRHRTSS 563

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG HV Q GS +    LRFD +H   +T  +L+ +E+ VN  I +
Sbjct: 564 NHTATHLLHQALRKVLGDHVEQKGSMVRSASLRFDFSHFAKVTPEQLQEVENFVNARIRE 623

Query: 646 NLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            LP+     N  D A+  GA AL G KY D VR +          S  LCGGTHV++T +
Sbjct: 624 QLPLEENRTNTYDAAVEDGAMALFGEKYGDVVRTIKFG------KSYELCGGTHVANTAD 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    I+SE ++ AGIRRIEAI+    +     Q      + + LK +  N    + ++ 
Sbjct: 678 VWHFKIMSEGAVAAGIRRIEAISSDAVKDFFAEQSRHFDEIKTILKSNTKNPADAIAQLQ 737

Query: 765 EEYRKL-----QLIHAKRKLQLNVE-DL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           +E   L     QL+ AK     N++ DL  S   I  VNF++   +++D+K +K +   +
Sbjct: 738 DENAALKKEIEQLLKAKAG---NLKGDLIASAQDINGVNFIA-TQTDLDAKSVKELAFEI 793

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874
           ++++ + + +++G S   KA++ ++++++L++    NA  + R   K +  GGGGG+ H 
Sbjct: 794 EREMDN-LFLIIGASNGDKATLTVMISKNLVEEKDLNAGSIVRELGKHI-QGGGGGQAHF 851

Query: 875 AQSGGPN 881
           A +GG N
Sbjct: 852 ATAGGKN 858


>gi|116670825|ref|YP_831758.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|205829979|sp|A0JX88|SYA_ARTS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116610934|gb|ABK03658.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 892

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 339/930 (36%), Positives = 500/930 (53%), Gaps = 82/930 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+  Y   T+VQK
Sbjct: 6   ITKRWIDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYNRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT   D     L 
Sbjct: 65  CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTSVDDGGYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI++D+G 
Sbjct: 121 PEKLWVTVYEEDDEAEQLWLKNTGMPAERIQRMGKADNYWSTGQPGPAGPCSEIYYDRGP 180

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLERM 233
              + GG P + E   RY+EIWNLVFMQ++  N + +        LPK +IDTG+G+ER+
Sbjct: 181 SYGVEGG-PIADEN--RYVEIWNLVFMQYQIDNVRSKVDFDITGELPKKNIDTGLGMERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284
           A +LQ+  N Y+ D  + +I  +  ++G +Y            + V  RV+ DH+RS+  
Sbjct: 238 AMILQDVENMYETDQVRPVIDKAAALSGKEYTSAESADDPHHTDDVRMRVVADHIRSALM 297

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +    
Sbjct: 298 LIADGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEKACLPDLLPASRDAMKGVYPVVETDF 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
             I     +E++ F +T+  G   L D V       + L+G  AF L+DT+G P+D+  +
Sbjct: 358 DRISRIAYAEEKAFLRTIASGTARLEDAVKDSKAAGQPLSGADAFALHDTYGFPIDLTLE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D   F + + EQR RA+A + G      +   F      G T F GY  L
Sbjct: 418 MAEEAGLK-VDEPEFRKLMLEQRQRAQADAKGKKGSHADLSAFQELLAEGETVFTGYTEL 476

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        S V+ I+  G  V +A +G+++E+V  +TPFYAE
Sbjct: 477 AGE-----------------------SKVRGILSGGRKVSQASTGEEIELVLAETPFYAE 513

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + R   
Sbjct: 514 AGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVQAAVDRERRHSA 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ TH++H AL  ILG    Q GS      LRFD    + +++A    IE+  N  I
Sbjct: 574 EQAHTGTHIVHAALHQILGPEALQRGSYNKAGYLRFDFAWGEGLSAATRSEIEEVSNLAI 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V T++M   +A A GA AL G  Y + VRVV ++    G  S  LCGGTHV++T 
Sbjct: 634 RNNFQVETKVMALAEAKALGAMALFGENYGNEVRVVEID----GAWSRELCGGTHVANTS 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR---- 759
            I  L ++ + S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R    
Sbjct: 690 LIGSLSLLGDQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTEMLKVPSGLLADRIATT 749

Query: 760 ------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSV 812
                 VE+  E  RK QL  A  +L    +D      A V  ++H   +V  + +L+ +
Sbjct: 750 LTKLKTVEKELERLRKEQLTAAAAQLVGTAKD-----AAGVKVIAHDAGQVSGADDLRGL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868
              L+ ++ S    + + G+S ++   V++V T +        A  L RL+A +L GGGG
Sbjct: 805 ALDLRTRLGSEAAAVAVAGVSNDR--PVILVATNEAARAAGVKAGALVRLAAGIL-GGGG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG+  +AQ GG +  K   A+  V   + +
Sbjct: 862 GGKDDVAQGGGTDAAKVPAALTAVVDAITR 891


>gi|113953976|ref|YP_731956.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|122945499|sp|Q0I6G6|SYA_SYNS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113881327|gb|ABI46285.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 893

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 341/920 (37%), Positives = 504/920 (54%), Gaps = 73/920 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ+K      T+ 
Sbjct: 18  AEIRAAFLSFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQKRPAPRATSS 76

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  F +D + 
Sbjct: 77  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTDLFGIDPKH 132

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183
           L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D   E  
Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFNPELG 192

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G+    E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  NN
Sbjct: 193 DEGI--DLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGLGLERMAQILQKVPNN 250

Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   LIQA+  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 251 YETDLIFPLIQAAADLAGVDYHQLDDAGQTSLKVIGDHSRAVTQLICDGVSASNLGRGYI 310

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR + + RLLG  +P ++ +  A    +  AYP +I+ + +I   L+ E+ RF +
Sbjct: 311 LRRLLRRVVRHGRLLGIHQPFLVTMGQASIALLKDAYPSVIERQEVILAELQREESRFLE 370

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I    GL  +D+  F Q
Sbjct: 371 TLERGEKLLADVLES--KPKQISGAQAFELYDTYGFPLELTQEIAEEHGL-DVDLAGFEQ 427

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E+QR RA+A ++ +   T +     +     AT F GYDLL  S              
Sbjct: 428 AMEQQRQRAKAAAVSIDL-TLQDAIDQVAADLNATSFEGYDLLVQS-------------- 472

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   SS V+A++  GE    A  G  V+VV D TPFY E GGQ+GD G  +GDG  
Sbjct: 473 --------SSTVQALLVNGEAAASASDGDVVQVVLDNTPFYGEGGGQVGDRGLLVGDGPD 524

Query: 541 ----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               + + +   +  G+FVH   V+ G L     +   +D   RR+   NH+ATHLL  A
Sbjct: 525 GNGLIVVIEGVSRNRGVFVHSGRVQLGRLGVGDVVHGQVDRACRRRAQANHTATHLLQAA 584

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++   + Q GS +  + LRFD    + +   EL+ IE  +N  I+    +    M  
Sbjct: 585 LKQVVDEGIGQAGSLVNFERLRFDFHCPRAVKPEELEQIETLINGWISDAQSLEVNEMAI 644

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A A+GA A+ G KY D VRVV V        S  LCGGTHV +T EI L  IVSES +
Sbjct: 645 DQAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVGNTAEIGLFKIVSESGV 699

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AGIRRIEA+ G    ++L  ++  +K L    K   G +V RV  + EE +  Q  L  
Sbjct: 700 AAGIRRIEAVAGASVLAYLNEREVVVKQLGDRFKAQPGEIVERVVALQEELKNSQKALTA 759

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           A+ +L +        +   V     +++ +D        D LQ     G++  +G     
Sbjct: 760 ARSELAVAKSAALAVQAVAVGKHQLLVARLDGVN----GDGLQGAAL-GLLDQLG----D 810

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSG 878
             +V++    D  D+   + +A     V+  G   G                RP++AQ+G
Sbjct: 811 ATAVVLGGLPDPSDQGKVILVAAFGKAVIATGQQAGKFIGAIAKLCGGGGGGRPNLAQAG 870

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G +G   D A+    + LKK
Sbjct: 871 GRDGAALDAALNTARAELKK 890


>gi|281492315|ref|YP_003354295.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281375979|gb|ADA65470.1| Alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 872

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 339/915 (37%), Positives = 496/915 (54%), Gaps = 73/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  AW+LLT    F+   
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFEFPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEV 178

Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 GL   +E  E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLERM 
Sbjct: 179 YDPEHMGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLERMV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N+D DLF  +I+  E+++G  Y  ++  ++ +VI DH+RS SF I DG LP 
Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + +  
Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  L+D +L +L   GKD +   D+ F+LYDT+G P+++ +++    G 
Sbjct: 359 EEETFNRTIDAGQKLIDELLVNLKSEGKDRLEGADI-FRLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F  A++ Q+ RARA  +  GS              GA       +   S+F+ 
Sbjct: 418 K-IDHEGFKVAMKAQQERARAAVVKGGS-------------MGAQNETLSSIEVESEFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           ED+    +             +   +Q  EIV+E VSG K ++VFD TPFYAE GGQ+ D
Sbjct: 464 EDKTAQGK-------------LLVAIQDDEIVDE-VSG-KAQLVFDVTPFYAEMGGQVAD 508

Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G  I D    +   + DVQ    G  + H++     L+   S  L ID + R  +  NH
Sbjct: 509 HGV-IKDAEGQVVANVLDVQHAPHGQNL-HSVETLSPLKVGESYTLEIDKERRAAVVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+L
Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI L
Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G+RRI A+TGQ+A       +  L  +A+ +K  Q   V+ +V  + +E
Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATLVKAPQTSQVLAKVTSLQDE 741

Query: 767 YRKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  Q  +     KL  +  D    +      +NF++  ++  D+  L+++ D  ++K  
Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK + ++   + D+     A +L +  A  +  G GGG+P MA +GG  
Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSDV----KAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856

Query: 882 GNKADQAIAGVASFL 896
                + +A VA  L
Sbjct: 857 AAGIPELLAAVAEKL 871


>gi|292670903|ref|ZP_06604329.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647524|gb|EFF65496.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 872

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 331/923 (35%), Positives = 521/923 (56%), Gaps = 87/923 (9%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + +R  +L+FF +K  H  L S SL+P NDPTL+   +GM P K  FTG+ KP +  + T
Sbjct: 4   NELREAYLQFFAEKKDHLRLSSYSLVPENDPTLLLIGAGMAPLKPFFTGKMKPPHNRIVT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L + 
Sbjct: 64  CQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVVELPKD 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++++Y ED+EA  +W + + +  D I+ +   DNFW +   GPCGP SEI+ D GE  
Sbjct: 120 KLWVSIYPEDDEARAIWLEQTDVLPDHIVAL--EDNFWEIG-PGPCGPDSEIYIDLGEEC 176

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R++EIWNLVF Q+++    E  IL   +IDTG GLER+A+V+Q K 
Sbjct: 177 GCGEPTCGIGCDCDRFLEIWNLVFTQYDRTEDGEYNILAHKNIDTGCGLERLASVVQNKK 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N++ DL   +I+   +++ + Y  +    ++ +VI DH RS + +I DGILP+NEGRGY
Sbjct: 237 TNFETDLLYPIIEYISKISDVSYGKDPQKDISLKVIADHARSVAIMIMDGILPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDER 357
           VLRR +RRA+ + R+LG T+P +   + A+      A  + ELI  +  I+  +  E++R
Sbjct: 297 VLRRTLRRAIRHGRMLGITKPFLDGAVSAVVEIFRDAKDFSELIAKQDYIKRVIHVEEDR 356

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL +G+ LL+  ++ L  +   +LNG++ FKLYDT+G P ++ ++IL   G+  +D 
Sbjct: 357 FASTLAQGIELLNEEVTRLKSENETVLNGEIGFKLYDTYGFPRELTEEILHENGVT-LDD 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN  +E+QR+RAR                S + +  A        +     M++    
Sbjct: 416 EGFNCEMEKQRTRAR----------------SARAENQAVSVPDLSNVDTGSLMED---- 455

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                     +   + V AI  +G++V+    G+   ++   TPF+AE GGQ+GD G   
Sbjct: 456 ---------ADATKATVVAIWHEGKLVDSLRDGETAGIILSTTPFHAEGGGQVGDEGSLR 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +   L +++ ++  +G   H A VE G ++   S+ + +D + +   + NH+ATHLLH 
Sbjct: 507 SELGYLTVSNTKRLPDGTVYHLAYVEEGQIQQGDSVEICLDTKKKLSSARNHTATHLLHA 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q GS +TP+ LRFD T+ +P++  +L+ IE+ VN+ I  ++ +   +M 
Sbjct: 567 ALRRVVGDHVQQAGSLVTPERLRFDFTNFEPVSEQQLRDIEELVNEEILCSIDLHISMMP 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV V        S  LCGG+HV++TG+I L  IVSES 
Sbjct: 627 IDEAKALGAMALFGEKYGDVVRVVRVPD-----FSIELCGGSHVTNTGQIGLFKIVSESG 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772
           + AG+RRIEAITG+ A ++       ++ L+  LK    ++V ++++   E + +Q    
Sbjct: 682 VAAGVRRIEAITGRAACAYAAEMARTVQELSQKLKTRSEDLVAQIDKFMTERKSMQEQLR 741

Query: 773 -------IHAKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                      +KL + V+++   ++    A+V+ M          EL+++ D   +K+ 
Sbjct: 742 SFAEFRDKADAQKLLMGVQEVGEFRVVVGKANVDSMD---------ELRNIADLTCEKLD 792

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL------GGGGGGGRPHMA 875
           SGI++L  +  +K   V +VV  D      AV L   +  ++       GGGGGGRP MA
Sbjct: 793 SGIVVLGAVIDDK---VSLVVKADKA----AVKLGAHAGNIIKAAAKAVGGGGGGRPDMA 845

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N  +  QA     + +++
Sbjct: 846 QAGGKNPEQLSQAFDEAVAVIRQ 868


>gi|188528029|ref|YP_001910716.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|205830066|sp|B2UV04|SYA_HELPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188144269|gb|ACD48686.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 847

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 314/833 (37%), Positives = 469/833 (56%), Gaps = 56/833 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKSKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  ++I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++    +  + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISDLASLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++EQ  R++A   G  +      + ++   Y    F+GY+                    
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYET------------------- 453

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
              T   + ++       + + +A   Q+V V+ ++TPFYAE GG +GD G  + D    
Sbjct: 454 ---TECCAKVLGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEA 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL  +L
Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A  
Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKD 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + +G+R
Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q      K  +
Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ------KAPV 735

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +VE L   KI  VN +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 736 SVE-LPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|125717605|ref|YP_001034738.1| alanyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|205830231|sp|A3CLY3|SYA_STRSV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125497522|gb|ABN44188.1| Alanyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 872

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      +++G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVISGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
                +  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEADMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   +G    ++F +TP
Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVETGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ  +A+ K +           +V++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG+P MA +GG   +     +A VA  L
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|83596048|gb|ABC25406.1| alanyl-tRNA synthetase [uncultured marine bacterium Ant39E11]
          Length = 868

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 339/909 (37%), Positives = 483/909 (53%), Gaps = 89/909 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL FF   GH ++ S+ L+  +D +LMF N+GM PFK+IFTG +   +  V 
Sbjct: 2   TASQIRQAFLNFFANKGHTIVHSAPLVTKDDSSLMFVNAGMNPFKDIFTGAKPASHSRVA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT  + LD 
Sbjct: 62  DSQKCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKQEAIDWAWELLTDVYQLDP 121

Query: 123 RRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY+T+++         D+EA   W K   L AD+I+    +DNFW M ETGPCGPCSE
Sbjct: 122 ERLYVTIFEGDKGDGLALDDEAKSHWLK--HLPADRILNGNKSDNFWEMGETGPCGPCSE 179

Query: 175 IFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           I  D    +      G    + +  + IE+WNLVFMQ+++        LP   +DTGMG 
Sbjct: 180 IHIDLRPEKERKQKDGATLVNMDHPQVIEVWNLVFMQYQRMADGSLVDLPSQHVDTGMGF 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+   ++ K++NYD D+F   IQ  E ++G  Y  +  V+   RVI DH+R+  F IAD
Sbjct: 240 ERLVRAIEGKSSNYDTDVFAPYIQRLESMSGRTYGKDESVDVAMRVIADHVRAVGFAIAD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G LP+N G GYV+RRI+RRA+ Y   +L + EP +  L+P +   MG A+PEL   + L+
Sbjct: 300 GQLPSNTGAGYVIRRILRRAVRYGYSVLQFKEPFIARLVPDMVENMGKAFPELKAQQTLM 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + +  E++ F +TL  GL  LD  +   GK   L G   F+LYDT+G PLD+   I   
Sbjct: 360 TQVIEEEEQAFLRTLASGLKRLDAAMKE-GKP--LMGKQCFELYDTYGFPLDLTALICKE 416

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465
           +G+  +D   F++A+ EQ+ R++           +K+  W  +    G  QF+GYD    
Sbjct: 417 KGIV-LDEKGFHEAMAEQKGRSKV-------AGAQKVGDWVEVAPGIG-DQFVGYDQYTT 467

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RKV   K                            G   +VV   TPFY E G
Sbjct: 468 ESKLLRYRKVSNAK----------------------------GDFTQVVIQPTPFYPEGG 499

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  I    R+++ +   +A  I    AI+     +   ++   ID   R+  + 
Sbjct: 500 GQVGDRGWLIMGKDRIEVLNCSSEAGAILHLVAIMP---AKPTAAVKAVIDEGKRKASAQ 556

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  ILG HV Q GS ++ + LRFD +H + I + EL +IE +V+  I Q
Sbjct: 557 NHSATHLLHKALRDILGVHVEQRGSFVSDEYLRFDFSHFQRIAAKELMAIESHVSTAILQ 616

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + P+   R    E+A A GA AL G KY D VRV+ +        S  LCGGTHVS+T  
Sbjct: 617 DHPLQEFRESTMEEAKAKGAMALFGEKYGDSVRVIQLG------DSVELCGGTHVSTTAA 670

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEI 763
           +    IVSESS+ AGIRRIEA+ G  A  +L    +  +S  + L+V++G + +  +E +
Sbjct: 671 LSPFVIVSESSVAAGIRRIEALAGHSAAIYL---KQAQQSQQAILEVTKGQDPLEAMESM 727

Query: 764 WEEY----RKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E     + L+   + +   L  E L S   I   N M+  + ++D+   K +  AL K
Sbjct: 728 KKELSAMQKALKSYQSAQAGDLKTELLQSAKAIGPYNMMAAAV-DLDAASAKDLAFALVK 786

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---GGGGGGRPHMA 875
           +    +++L  +S + KA   + V +  LD    V  A    K LG    G GGG+   A
Sbjct: 787 QDPKSVVLL-ALSNDGKAQAHMAVGKQALD----VAHAGQWVKALGHYIQGSGGGQDFYA 841

Query: 876 QSGG--PNG 882
            +GG  P+G
Sbjct: 842 SAGGKSPSG 850


>gi|146318890|ref|YP_001198602.1| alanyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|253751968|ref|YP_003025109.1| alanyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753793|ref|YP_003026934.1| alanyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253755331|ref|YP_003028471.1| alanyl-tRNA synthetase [Streptococcus suis BM407]
 gi|205830232|sp|A4VVR3|SYA_STRSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145689696|gb|ABP90202.1| Alanyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|251816257|emb|CAZ51885.1| alanyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251817795|emb|CAZ55547.1| alanyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251820039|emb|CAR46252.1| alanyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|319758333|gb|ADV70275.1| alanyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 872

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 342/923 (37%), Positives = 510/923 (55%), Gaps = 78/923 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +T+  G    + ++  L   GK EI   D+ FKLYDT+G  +++ ++
Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462
           +   RG+  +DI  F  A++EQ+ RARA  +  GS G   +   ++ E+  +T   G   
Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  S                     +S IV    +      EAVS  +  +VFDQTPFYA
Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501

Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           E GGQ+ D G    A GD I   + DVQK   G  +H   +   I     +  L I+ + 
Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ V
Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I   +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV
Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  
Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813
           +VE + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  
Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFA 794

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  ++K  S +++LV    +K   ++   + D+    +A +L ++ A ++  G GGG+P 
Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           MA +GG + +     +  VA  L
Sbjct: 850 MAMAGGSDASAIQTLLNSVADNL 872


>gi|25010884|ref|NP_735279.1| alanyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|41018224|sp|Q8E600|SYA_STRA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|23095263|emb|CAD46473.1| Alanyl-tRNA synthetase [Streptococcus agalactiae NEM316]
          Length = 872

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 333/921 (36%), Positives = 502/921 (54%), Gaps = 74/921 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE   P      L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  + + K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + +K  + +A VA  L
Sbjct: 852 MAGGSDASKIAELLAAVAENL 872


>gi|325697162|gb|EGD39049.1| alanine--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 872

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 340/928 (36%), Positives = 507/928 (54%), Gaps = 94/928 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++   Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSSKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + L   EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLDINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + A+V     VE   SG    ++F +TP
Sbjct: 459 ------SAFNYEKEELTAE-------------LLAVVADDAAVESVESGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  I DG   +  Q+TDVQK   G  +H   V    L    S  L ID
Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE
Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGG
Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKGMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           THV +T EI +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   
Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731

Query: 756 VVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           V  +VE + E+ R+LQ             A  ++  NV++ + H     +F++  +S  D
Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           +  L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  
Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           G GGG+P MA +GG   +     +A VA
Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPALLAAVA 869


>gi|313124260|ref|YP_004034519.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280823|gb|ADQ61542.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|325685733|gb|EGD27811.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 877

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 341/918 (37%), Positives = 508/918 (55%), Gaps = 70/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DL
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+
Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E+++ G KY  N  +  + ++I DH+R+ SF I DG 
Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDTSFKIIADHIRAISFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I + 
Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIAGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +    +
Sbjct: 356 IKNEEDRFGVTLEAGLTLLDDLIDKAEKSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +E Q+ RAR     L S G+ ++    +K+K          +     
Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGV 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           + +E                 S +V  IV   ++V++A  G+K  ++FD+TPFYAE GGQ
Sbjct: 466 YEEE-----------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        L  ++ DVQ       +H   V   +++ + +  L ID   R  L  
Sbjct: 507 VADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVILPLVKGQ-TYKLKIDRARREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V T   + E     GA AL   KY D+VRVV ++       S   CGGTH  +T +I
Sbjct: 626 SIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K ++  ++  ++  + 
Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASLQ 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R  +  +A  K Q+N             + D+  ++ I       +L+ + D  + +
Sbjct: 741 EELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L G   E KA++LI + +  LD+   A DL +  A +  GGGGGGRP+MAQ+G
Sbjct: 801 GKSDVLIL-GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFL 896
           G        AI    S L
Sbjct: 859 GKKPEGLQDAIDAAVSQL 876


>gi|302023989|ref|ZP_07249200.1| alanyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330833035|ref|YP_004401860.1| alanyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329307258|gb|AEB81674.1| alanyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 872

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 342/923 (37%), Positives = 510/923 (55%), Gaps = 78/923 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +T+  G    + ++  L   GK EI   D+ FKLYDT+G  +++ ++
Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462
           +   RG+  +DI  F  A++EQ+ RARA  +  GS G   +   ++ E+  +T   G   
Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  S                     +S IV    +      EAVS  +  +VFDQTPFYA
Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501

Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           E GGQ+ D G    A GD I   + DVQK   G  +H   +   I     +  L I+ + 
Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ V
Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I   +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV
Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  
Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813
           +VE + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  
Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFA 794

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D  ++K  S +++LV    +K   ++   + D+    +A +L ++ A ++  G GGG+P 
Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           MA +GG + +     +  VA  L
Sbjct: 850 MAMAGGSDSSAIQTLLNSVAENL 872


>gi|22536974|ref|NP_687825.1| alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76799299|ref|ZP_00781465.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|41018221|sp|Q8E0C4|SYA_STRA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|22533828|gb|AAM99697.1|AE014228_18 alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76585342|gb|EAO61934.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 872

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 333/921 (36%), Positives = 504/921 (54%), Gaps = 74/921 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  + + K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + +K  + +A VA  L
Sbjct: 852 MAGGSDASKIAELLAAVAENL 872


>gi|94988809|ref|YP_596910.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94992695|ref|YP_600794.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|205830223|sp|Q1JB08|SYA_STRPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830224|sp|Q1JL53|SYA_STRPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94542317|gb|ABF32366.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546203|gb|ABF36250.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 872

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 334/918 (36%), Positives = 503/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  +G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++    
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKHDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|170016825|ref|YP_001727744.1| alanyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|205830134|sp|B1MXP8|SYA_LEUCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169803682|gb|ACA82300.1| Alanyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 894

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 338/920 (36%), Positives = 494/920 (53%), Gaps = 64/920 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPKNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEM+GNFS G YFK   I  AW+LLT    + LD+
Sbjct: 67  QKAIRT----NDIENVGKTARHHTLFEMMGNFSVGDYFKAEVIPWAWELLTSPEWYGLDK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             LY+TVY +D+EA K+W + + L    I  +   DNFW + E GP GP SEIFFD+G  
Sbjct: 123 DLLYVTVYPKDQEAKKIWLEKTDLPEGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRGPA 179

Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMGLE 231
                   P   PG   E ERY+EIWN+VF QF       +  +   LP  +IDTGMGLE
Sbjct: 180 FQNLPDNDPEMYPGG--ENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-----GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           R+ +V Q    N+D DLF  +I+A+E+++         +  +  + +VI DH+R+ +F I
Sbjct: 238 RLVSVFQNGRTNFDTDLFLPIIRATEKMSPDYTYDATKDSESNTSFKVIADHIRAITFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LPANEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+      
Sbjct: 298 GDGALPANEGRGYVIRRLLRRAVLHGQKLGIQGEFLTKLVPIVAEIMQSYYPEIADNTEK 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I++T+ +E++RF  TL  GL LL+ V++       ++++G  AFKL DT+G PL++ Q+ 
Sbjct: 358 IQKTIAAEEKRFNATLTGGLSLLNDVIAKAKASGQQVISGADAFKLSDTYGFPLELTQEQ 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D++ FN AL+ QR+RARA               S  +  G    +  DL  
Sbjct: 418 AADEGLT-VDVVGFNDALQAQRTRARAAR-------------SNDKSMGVQNAVLTDLKV 463

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            S ++      +     + +    +  V A++   E       G  V++VFD+TPFYAE 
Sbjct: 464 PSDYVGWSETEVSNAAIVAIIGHDNQGVDALLANAE------PGDSVQLVFDKTPFYAEM 517

Query: 525 GGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           GGQ+ D G  +     +  ++TD Q    G  VH   V     +    + L ++      
Sbjct: 518 GGQVADQGEVLNKQGEVVARVTDTQSAPNGQHVHTVEVVTS-FKLGDQVALKVNLARHVA 576

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S NH+ATHLL   L  ++G  V Q GS + P+ LRFD TH  P++   L+ IE  VN +
Sbjct: 577 ISKNHTATHLLDQTLRNVIGGDVHQAGSLVEPEYLRFDFTHEGPVSEQNLEKIETMVNQV 636

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           IA NLP+     + E A   GA A+ G KY D VRVVS+     G  +    GGTH  +T
Sbjct: 637 IANNLPITWVETDIESAKKMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDGGTHAQTT 691

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761
            E+ L  IVSES I AG+RRIEA+TG  A S    +++ LK +A  LK  +  +   +VE
Sbjct: 692 AELGLFKIVSESGIGAGVRRIEAVTGLAALSQFKAEEQALKVIADSLKAQKLTDAPAKVE 751

Query: 762 EIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDAL 816
           ++  E + LQ  L   + +L           +   N   +I +++       L+ V+D  
Sbjct: 752 DLQVEIKTLQRHLTSVEAQLANAAAQDVFKDVKTQNGYQYITAQLQVSGMDGLRQVVDTW 811

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++   S +++L     +K + ++    E     F A DL +  A  + GGGGGGRP MAQ
Sbjct: 812 RENYPSDVLVLATHVDDKVSLIVAASPEANKKGFKAGDLIKAIAPKI-GGGGGGRPDMAQ 870

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N    + A + V++FL
Sbjct: 871 AGGKNPAGINDAFSAVSTFL 890


>gi|76788418|ref|YP_329556.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|123601966|sp|Q3K1P7|SYA_STRA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76563475|gb|ABA46059.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909]
          Length = 872

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 334/926 (36%), Positives = 504/926 (54%), Gaps = 84/926 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458
            L       ID   F  A++EQ+ RARA      S+G+ + T   I    +  YGA    
Sbjct: 411 -LAEDADYKIDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGIVEESRFDYGA---- 465

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                                      + + S +  I+   E  E    GQ + +VF QT
Sbjct: 466 ---------------------------DSLESNLSVIIADNERTEAVSEGQAL-LVFAQT 497

Query: 519 PFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G    D      ++ DVQK   G  +H   V    L    +  L I+
Sbjct: 498 PFYAEMGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEIN 556

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE
Sbjct: 557 KERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIE 616

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I  +L + T   + E A   GA AL G KY   VRVV +     G +S  LCGG
Sbjct: 617 QEVNEQIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGG 671

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755
           TH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +
Sbjct: 672 THLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKD 731

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELK 810
              +V+ + +  R LQ  + + K +              +   V F++  +   D+  L+
Sbjct: 732 AAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALR 791

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  D  ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG
Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGG 846

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P MA +GG + +K  + +A VA  L
Sbjct: 847 KPDMAMAGGSDASKIAELLAAVAENL 872


>gi|15673706|ref|NP_267880.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|20532263|sp|Q9CEW0|SYA_LACLA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|12724742|gb|AAK05822.1|AE006402_10 alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|326407190|gb|ADZ64261.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 872

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/915 (37%), Positives = 496/915 (54%), Gaps = 73/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  AW+LLT    F+   
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFEFPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEV 178

Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 GL   +E  E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLERM 
Sbjct: 179 YDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLERMV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N+D DLF  +I+  E+++G  Y  ++  ++ +VI DH+RS SF I DG LP 
Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + +  
Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  L+D +L +L   GKD +   D+ F+LYDT+G P+++ +++    G 
Sbjct: 359 EEETFNRTIDAGQKLIDELLLNLKSEGKDRLEGADI-FRLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F  A++ Q+ RARA  +  GS              GA       +   S+F+ 
Sbjct: 418 K-IDHEGFKVAMKAQQERARAAVVKGGS-------------MGAQNETLSSIEVESEFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           ED+    +             +   +Q  EIV+E VSG K ++VFD TPFYAE GGQ+ D
Sbjct: 464 EDKTTQGK-------------LLVSIQDDEIVDE-VSG-KAQLVFDVTPFYAEMGGQVAD 508

Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G  I D    +   + DVQ    G  + H++     L+   S  L ID + R  +  NH
Sbjct: 509 HGV-IKDAEGQVVANVLDVQHAPHGQNL-HSVETLSPLKVGESYTLEIDKERRAAVVKNH 566

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+L
Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI L
Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G+RRI A+TGQ+A       +  L  +A+ +K  Q   V+ +V  + +E
Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATMVKAPQTSQVLAKVTSLQDE 741

Query: 767 YRKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  Q  +     KL  +  D    +      +NF++  ++  D+  L+++ D  ++K  
Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK + ++   + D+     A +L +  A  +  G GGG+P MA +GG  
Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSDV----KAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856

Query: 882 GNKADQAIAGVASFL 896
                + +A VA  L
Sbjct: 857 AAGIPELLAAVAEKL 871


>gi|45656657|ref|YP_000743.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|48428508|sp|P61703|SYA_LEPIC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|45599893|gb|AAS69380.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 977

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/984 (34%), Positives = 503/984 (51%), Gaps = 118/984 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   T
Sbjct: 5   SVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D     F  D+
Sbjct: 65  SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGNYFKEEAIEYALDCSVNHFGFDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180
            ++++TVY +D+EA K+W    G+  ++I R+   DNFW  A ++G CGPCSE++ D+G 
Sbjct: 121 NKIWVTVYTDDDEAEKIWLS-KGIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRGI 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C   G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A 
Sbjct: 180 EKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------------------- 269
           +LQE  + YD +  + +I   E+++G+ YE   +                          
Sbjct: 240 LLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQD 299

Query: 270 ---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                 RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+
Sbjct: 300 SRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLV 359

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNG 384
             +     + YPEL +    I +T+  E+E F KTL+ GL  ++ ++  +  G   I +G
Sbjct: 360 DKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFSG 419

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH------SL--GL 436
             AF LY T+G P ++ ++I+  +GL   D   F + LE+ R  +R        SL  GL
Sbjct: 420 ADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTGL 478

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
               TE + +S     G    + Y+  + S  + +    L    P    +  S  V ++ 
Sbjct: 479 NVDKTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDSKQVSSLK 538

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           +          GQ   +V ++TPFY E GGQ+GD G         ++ D QK+ + I +H
Sbjct: 539 E----------GQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSI-IH 587

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              V  G       L   ++   R +L  +HS THLL+ AL T+LG HV Q GS ++P+ 
Sbjct: 588 FGEVLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEY 647

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           LRFD +H   +TS E++ IE  VN+ I +N PV T+ ++ EDA  +GA A  G KY +RV
Sbjct: 648 LRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERV 707

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-------Q 729
           RVV +     G  S   CGGTHVS TGEI   +I  ESS  AG RRIE + G       Q
Sbjct: 708 RVVQM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQ 762

Query: 730 RARSHL--------------MGQD-----------------EKLK----SLASFLKVSQG 754
              S L              +G++                 EKL+    S  SF +    
Sbjct: 763 NRFSELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSE 822

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKEL 809
           N+  ++EE    + K++   A+R  + N   +     + V+      +S I  + D   L
Sbjct: 823 NIATKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSL 882

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGG 868
           K + D L+ + +  +++++G    + AS++I  + +L L   +  +L + + ++L GG G
Sbjct: 883 KGLSDNLKVR-EKNLLVILGSRNSENASIVITCSSELTLKGIHCGNLIKTACELL-GGKG 940

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GGRP MAQ GG      + AIAGV
Sbjct: 941 GGRPDMAQGGGKEKQNLESAIAGV 964


>gi|24216106|ref|NP_713587.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|41018228|sp|Q8F0T4|SYA_LEPIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24197348|gb|AAN50605.1|AE011499_4 alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 977

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/984 (34%), Positives = 503/984 (51%), Gaps = 118/984 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   T
Sbjct: 5   SVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D     F  D+
Sbjct: 65  SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIEYALDCSVNHFGFDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180
            ++++TVY +D+EA K+W    G+  ++I R+   DNFW  A ++G CGPCSE++ D+G 
Sbjct: 121 NKIWVTVYTDDDEAEKIWLS-KGIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRGI 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C   G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A 
Sbjct: 180 EKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------------------- 269
           +LQE  + YD +  + +I   E+++G+ YE   +                          
Sbjct: 240 LLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQD 299

Query: 270 ---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                 RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+
Sbjct: 300 SRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLV 359

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNG 384
             +     + YPEL +    I +T+  E+E F KTL+ GL  ++ ++  +  G   I +G
Sbjct: 360 DKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFSG 419

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH------SL--GL 436
             AF LY T+G P ++ ++I+  +GL   D   F + LE+ R  +R        SL  GL
Sbjct: 420 ADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTGL 478

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
               TE + +S     G    + Y+  + S  + +    L    P    +  S  V ++ 
Sbjct: 479 NVDKTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDSKQVSSLK 538

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           +          GQ   +V ++TPFY E GGQ+GD G         ++ D QK+ + I +H
Sbjct: 539 E----------GQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSI-IH 587

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              V  G       L   ++   R +L  +HS THLL+ AL T+LG HV Q GS ++P+ 
Sbjct: 588 FGEVLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEY 647

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           LRFD +H   +TS E++ IE  VN+ I +N PV T+ ++ EDA  +GA A  G KY +RV
Sbjct: 648 LRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERV 707

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-------Q 729
           RVV +     G  S   CGGTHVS TGEI   +I  ESS  AG RRIE + G       Q
Sbjct: 708 RVVQM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQ 762

Query: 730 RARSHL--------------MGQD-----------------EKLK----SLASFLKVSQG 754
              S L              +G++                 EKL+    S  SF +    
Sbjct: 763 NRFSELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSE 822

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKEL 809
           N+  ++EE    + K++   A+R  + N   +     + V+      +S I  + D   L
Sbjct: 823 NIATKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSL 882

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGG 868
           K + D L+ + +  +++++G    + AS++I  + +L L   +  +L + + ++L GG G
Sbjct: 883 KGLSDNLKVR-EKNLLVILGSRNSENASIVITCSSELTLKGIHCGNLIKTACELL-GGKG 940

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GGRP MAQ GG      + AIAGV
Sbjct: 941 GGRPDMAQGGGKEKQNLESAIAGV 964


>gi|116514511|ref|YP_813417.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274757|sp|Q048Z3|SYA_LACDB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830262|sp|Q1G947|SYA_LACDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116093826|gb|ABJ58979.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126223|gb|ADY85553.1| Ala-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 877

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 340/918 (37%), Positives = 508/918 (55%), Gaps = 70/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DL
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+
Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E+++ G KY  N  + ++ ++I DH+R+ SF I DG 
Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I + 
Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++      +D+ ++G  AFK++DT+G P ++  +    +
Sbjct: 356 VKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +E Q+ RAR     L S G+ ++    +K+K          +     
Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGV 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           + +E                 S +V  IV   ++V++A  G+K  ++FD+TPFYAE GGQ
Sbjct: 466 YEEE-----------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        L  ++ DVQ       +H   V   +++ + +  L ID   R  L  
Sbjct: 507 VADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQ-TYKLKIDRARREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T   + E     GA AL   KY D+VRVV ++       S   CGGTH  +T +I
Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K ++   +  ++  + 
Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQ 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R  +  +A  + Q+N             + D+  ++ I       +L+ + D  + +
Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L G   E KA++LI + +  LD+   A DL +  A +  GGGGGGRP+MAQ+G
Sbjct: 801 GKSDVLIL-GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      AI    S L
Sbjct: 859 GKNPEGLQDAIDAAVSQL 876


>gi|308062521|gb|ADO04409.1| alanyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 847

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 314/837 (37%), Positives = 466/837 (55%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y    F+GY+    S     F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
              P                           Q+V V+ ++TPFYAE GG +GD G    D
Sbjct: 473 DANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALFKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAAMVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS +    LRFD +H K +   EL+ +ED +N  I ++L      M   
Sbjct: 565 REVLGPHVSQAGSLVESKRLRFDFSHPKALNDKELEKVEDLINAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    IV ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q    K 
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ----KT 733

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + +   DL   KI  V+ +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 734 PVSM---DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|120434599|ref|YP_860290.1| alanyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|205830059|sp|A0LXX3|SYA_GRAFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117576749|emb|CAL65218.1| alanyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 871

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 346/922 (37%), Positives = 504/922 (54%), Gaps = 87/922 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEFF+   H ++PS+ ++  +DPTLMFTN+GMV FK  F G        VT  QK
Sbjct: 6   IRKQFLEFFKSKSHTIVPSAPMVLKDDPTLMFTNAGMVQFKEFFLGNSVAKSNRVTDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + +    LY
Sbjct: 66  CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWELLTEVYKISPENLY 125

Query: 127 ITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           ++V++          D EA +LWKKI  +  ++II     DNFW M + GPCGPCSEI  
Sbjct: 126 VSVFEGSDDRDDLGLDTEALELWKKI--VPEERIIYGNKKDNFWEMGDQGPCGPCSEIHI 183

Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D + E      PG    + +  + +EIWNLVFMQ+ ++   +   LP   IDTGMG ER+
Sbjct: 184 DIRSEEEKAKTPGRDLVNMDHPQVVEIWNLVFMQYNRKANGDLEELPAKHIDTGMGFERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290
             VLQ   +NYD D+F  L+   E++TG+ Y   E NNI   RVI DH+R+ +F IADG 
Sbjct: 244 CMVLQNTQSNYDTDVFTPLVGEIEEITGVTYGKSEENNIA-MRVIADHVRAVAFSIADGQ 302

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           LP+N G GYV+RRI+RRA+ Y    L   EP +  L+P L  +MG+ + EL   + LIE 
Sbjct: 303 LPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVPVLSGQMGATFQELKSQQNLIEN 362

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +R E+  F +TLD+GL+LL+ ++    KD+ ++G+ AF+LYDT G P+D+   IL   G
Sbjct: 363 VIREEEASFLRTLDQGLILLENLMKE-SKDKTISGEKAFELYDTFGFPIDLTALILKENG 421

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D   F   L++Q+ R+R  +  + +G     W  L        F+GYD L     +
Sbjct: 422 Y-DLDEKGFEAELKKQKDRSR-EATAVSAGD----WIELN-PVDEESFVGYDKLEADAKI 474

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
              RKV  +K                            G+  +VV ++TPFY E GGQ+G
Sbjct: 475 ARYRKVESKK---------------------------KGEMFQVVLNKTPFYPEGGGQVG 507

Query: 530 DTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G  +  DG  + + D +K+   I +H    +     TE      ++   R   + NH+
Sbjct: 508 DKGILMSSDGEVVDVVDTKKENNQI-IH--FTKNLPKNTEAEFKAIVNKTERYNTASNHT 564

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL +ILG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I + L 
Sbjct: 565 ATHLLHQALRSILGTHVEQKGSMVQSGYLRFDFSHFSKVTGEELEKVENFVNARIREQLS 624

Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   R ++ ++AI  GA AL G KY D VR  ++ + D    S  LCGG HV +T +I  
Sbjct: 625 LDEQRNISYQEAIDQGAIALFGEKYGDSVR--AIRFGD----SMELCGGIHVKNTSDIWH 678

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I  ES++ +GIRRIEAITG+ A  +   Q   L+ + S LK S  + V  +  + EE 
Sbjct: 679 FKISGESAVASGIRRIEAITGEAAMKYFEEQTNILEEIKSGLKNSN-DPVKAINNLQEEN 737

Query: 768 RKLQLIHAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                I+ KR+++  ++D +             I  VNF+S  + ++D+  +K +   L 
Sbjct: 738 -----INLKRQIESLLKDKAKNLKSKLKHEVKSINGVNFLSKKV-DLDAAGIKDLAFQLG 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++I   + +L G  +  KA +   ++++L+     NA  + R   K +  GGGGG+P  A
Sbjct: 792 EEIDD-LFILFGAEQHGKALLSCYISKELVKGKDLNAGQIVRELGKYI-QGGGGGQPFFA 849

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N +  ++A+    SF+K
Sbjct: 850 TAGGKNPDGLNEALQKAESFIK 871


>gi|116494328|ref|YP_806062.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122264244|sp|Q03B02|SYA_LACC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116104478|gb|ABJ69620.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 336/910 (36%), Positives = 507/910 (55%), Gaps = 77/910 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF
Sbjct: 117 WFGFDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           +D+G+         P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGM
Sbjct: 173 YDRGQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285
           GLER+  V+Q     ++ DLF  +I+A+E+++  K  G    + V+ ++I DH R+ +F 
Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFA 289

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  + 
Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQ 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            I++ + SE+ RF +TLD G+ LL+ +++ L   GK EI   D AFKL+DT+G P+++  
Sbjct: 350 FIQKVIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTN 408

Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           +     GL  +D+  F + +  QR RAR A       G+ +K+  S+      ++F G+ 
Sbjct: 409 EYAQDEGLQ-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW- 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                +L +  +S+   +V   + ++++VS    +++FD+TPFY
Sbjct: 464 --------------------TELDHKHASLQTIVVN--DQLQDSVSEGTAQLIFDETPFY 501

Query: 522 AEAGGQLGDTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           AE GGQ+ D G     DG  L  ++DVQ    G  +H   V +G L T     L++D   
Sbjct: 502 AEMGGQVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLR 560

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  V
Sbjct: 561 RKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIV 620

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I   LP+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH 
Sbjct: 621 NQKIWDALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHP 675

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
           +++  + L  I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  
Sbjct: 676 TNSNALGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPS 735

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++  + +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + 
Sbjct: 736 KVTQLQADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLA 795

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871
           D  + K Q+  I+++G     KA++L+ V +      F A DL + ++ KV   GGGGGR
Sbjct: 796 DKWKAK-QASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGR 852

Query: 872 PHMAQSGGPN 881
           P MAQ+GG N
Sbjct: 853 PDMAQAGGKN 862


>gi|306827097|ref|ZP_07460394.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304430731|gb|EFM33743.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 872

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 333/918 (36%), Positives = 503/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSLD 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  +G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R  Q  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|318040735|ref|ZP_07972691.1| alanyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 889

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 342/910 (37%), Positives = 505/910 (55%), Gaps = 77/910 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ++      T+ 
Sbjct: 20  AEIRAAFLDFYEQRGHKPMASASLVP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSS 78

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F L  + 
Sbjct: 79  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLSPKN 134

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183
           L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D + E  
Sbjct: 135 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELG 194

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G+    E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   NN
Sbjct: 195 DDGI--DLEDDSRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQAVPNN 252

Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   LI+ + Q+ G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 253 YETDLIYPLIETAAQLAGVAYPALDDKGKTSLKVIGDHSRAITQLICDGVTASNLGRGYI 312

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF +
Sbjct: 313 LRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLVERREVILAELQREEARFLE 372

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ ++I    GL  +D+  F  
Sbjct: 373 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLT-MDLEGFEA 429

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR RA+A ++ +     E I   +     AT F GY+LL                 
Sbjct: 430 AMEAQRQRAKAAAVSIDLTLQEAI-DQVAADLEATAFRGYELLE---------------- 472

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   SS V A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G   GD + 
Sbjct: 473 -------QSSCVLALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDELI 525

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + I D   +   +FVH   +ERG+L     +   +D   RR+   NH+ATHLL  AL  +
Sbjct: 526 VAI-DAVSRNRSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAALKQV 584

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +   + Q GS +  D LRFD    + ++++EL+ IE  +N  I++   +  + M  E A 
Sbjct: 585 VDPGIGQAGSLVDFDRLRFDFHCPRAVSASELEQIEVLINGWISEAHSLEVQEMAIEKAK 644

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IVSES + AGI
Sbjct: 645 AAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSESGVAAGI 699

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G    ++L  +D  +K L    K     +V RV ++ +E +  Q   A  + +
Sbjct: 700 RRIEAVAGPAVLAYLNERDGVVKQLGERFKAQPAEIVDRVVQLADELKASQKALAAAREE 759

Query: 781 LNVEDLSCHKIADVNFMSH--IISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKK 835
           L +   +      V    H  +++ +D  E   L+S    L  ++  G            
Sbjct: 760 LALAKSAALAGLAVAVGEHQLLVARLDGVEGGGLQSAAQGLADQLGDG------------ 807

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSGG 879
           A+V++    D  D    + +A     V+  G   G                RP++AQ+GG
Sbjct: 808 AAVVLGGLPDPADLGKVILVASFGKAVIAAGPKAGAFIGGIAKACGGGGGGRPNLAQAGG 867

Query: 880 PNGNKADQAI 889
            +G   D A+
Sbjct: 868 RDGAALDGAL 877


>gi|220912769|ref|YP_002488078.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859647|gb|ACL39989.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 898

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 332/922 (36%), Positives = 497/922 (53%), Gaps = 78/922 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +++FF   GH  +PS+SL+  +DP+L+FT +GMVPF    T +E+  Y   T+VQK
Sbjct: 10  ITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYTRATSVQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT   D     L 
Sbjct: 69  CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKYAWELLTTSVDDGGYGLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L++TVY+ED+EA +LW K +G+ A++I ++   DN+W+  + GP GPCSEI++D+G 
Sbjct: 125 PELLWVTVYEEDDEAKELWLKNTGVPAERIQKMGKADNYWNTGQPGPAGPCSEIYYDRGP 184

Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER------FILPKMSIDTGMGLERM 233
              I GG P + E   RYIEIWNLVFMQ++  N + +        LPK +IDTG+G+ER+
Sbjct: 185 AYGIEGG-PLADET--RYIEIWNLVFMQYQIDNVRSKDDFDIVGELPKKNIDTGLGMERL 241

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284
           A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+RS+  
Sbjct: 242 AMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETPDDPHHTDDVRMRVVGDHIRSALM 301

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI+DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +    
Sbjct: 302 LISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPDLLPASRDAMKGVYPVVETDF 361

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
             I     +E++ F +T+  G   L+  V      ++ L+G+ AF L+DT+G P+D+  +
Sbjct: 362 ARISRIAYAEEKAFLRTIASGTARLEEAVKESKAANKQLSGEDAFALHDTYGFPIDLTLE 421

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D  +F   ++EQR RA+A + G   G  +   F      G T F GY  L
Sbjct: 422 MAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQDILAQGETVFTGYTEL 480

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        S V+ ++  G  V++A +G ++E+V  +TPFYAE
Sbjct: 481 DGE-----------------------SRVRGLLTGGRPVQQAATGDEIELVLSETPFYAE 517

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + R   
Sbjct: 518 AGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVRAAVDRERRHAA 577

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  N  I
Sbjct: 578 EQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSNLAI 637

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V T++M   +A A GA AL G  Y   VRVV ++    G  S  LCGGTHV++T 
Sbjct: 638 RNNYAVETKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHVANTS 693

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760
            I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R+   
Sbjct: 694 LIGSLSLLGEQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTDLLKVPSGQLADRISAT 753

Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSV 812
                  E+  +  RK QL  +  +L  + +D      A V+ ++H    V  + +++ +
Sbjct: 754 LAKLKATEKELDRLRKEQLAASAAQLVNSAKD-----AAGVSLIAHDAGSVSGADDIRGL 808

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGG 870
              L+ ++ S    +          +++V T +        A  L RL+A VL GGGGGG
Sbjct: 809 ALDLRNRLGSAPAAVAVAGVANDRPLVLVATNEAARNAGVKAGALVRLAAGVL-GGGGGG 867

Query: 871 RPHMAQSGGPNGNKADQAIAGV 892
           +  +AQ GG +  K   A+A +
Sbjct: 868 KDDVAQGGGTDAGKVGAALAAI 889


>gi|77408860|ref|ZP_00785587.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77172546|gb|EAO75688.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 872

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 334/921 (36%), Positives = 503/921 (54%), Gaps = 74/921 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ +  VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFXVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDATAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  + + K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + +K  + +A VA  L
Sbjct: 852 MAGGSDASKIAELLAAVAENL 872


>gi|78185740|ref|YP_378174.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|78170034|gb|ABB27131.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 899

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 334/892 (37%), Positives = 509/892 (57%), Gaps = 55/892 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           + IR+ FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 27  AEIRSAFLRFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 84

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D +
Sbjct: 85  SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDPK 140

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182
            L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D + E 
Sbjct: 141 HLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL 200

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              G+    E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 201 GDEGI--DLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 258

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 259 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 319 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 379 ETLERGEKLLSEVLDS--KPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 435

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +   T +     +     AT F GY  L              ++
Sbjct: 436 EAMEQQRQRAKAAAVSIDL-TLQDAIDQVVATQKATAFQGYQRL--------------EQ 480

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
           P         S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 481 P---------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 531

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 532 IVAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 590

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L  IE  +N  IA+   ++   M  + A
Sbjct: 591 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 650

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 651 KAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVGESGVAAG 705

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +     LI A+ 
Sbjct: 706 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 765

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----I 830
           +L +        K   I     +   +  VD   L+    +L  ++  G  +++G     
Sbjct: 766 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 825

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           S + K  ++    +D++           +   L GGGGGGRP++AQ+GG +G
Sbjct: 826 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGGGRPNLAQAGGRDG 877


>gi|319744847|gb|EFV97185.1| alanine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 872

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 334/921 (36%), Positives = 502/921 (54%), Gaps = 74/921 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  +G N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGENM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKSEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTESVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ D G    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVSV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  I+G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  + + K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG + +K  + +A VA  L
Sbjct: 852 MAGGSDASKIAELLAAVAENL 872


>gi|191637661|ref|YP_001986827.1| alanyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|301065839|ref|YP_003787862.1| alanyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|190711963|emb|CAQ65969.1| Alanyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|300438246|gb|ADK18012.1| Alanyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|327381717|gb|AEA53193.1| Alanyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327384883|gb|AEA56357.1| Alanyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 881

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 336/910 (36%), Positives = 507/910 (55%), Gaps = 77/910 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF
Sbjct: 117 WFGFDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           +D+G+         P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGM
Sbjct: 173 YDRGQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285
           GLER+  V+Q     ++ DLF  +I+A+E+++  K  G    + V+ ++I DH R+ +F 
Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFA 289

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  + 
Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQ 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            I++ + SE+ RF +TLD G+ LL+ +++ L   GK EI   D AFKL+DT+G P+++  
Sbjct: 350 FIQKVIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTN 408

Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           +     GL  +D+  F + +  QR RAR A       G+ +K+  S+      ++F G+ 
Sbjct: 409 EYAQDEGLQ-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW- 463

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                +L +  +S+   +V   + ++++VS    +++FD+TPFY
Sbjct: 464 --------------------TELDHKHASLQTIVVN--DQLQDSVSEGTAQLIFDETPFY 501

Query: 522 AEAGGQLGDTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           AE GGQ+ D G     DG  L  ++DVQ    G  +H   V +G L T     L++D   
Sbjct: 502 AEMGGQVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLR 560

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  V
Sbjct: 561 RKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIV 620

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I   LP+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH 
Sbjct: 621 NQKIWDALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHP 675

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
           +++  + L  I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  
Sbjct: 676 TNSSALGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPS 735

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++  + +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + 
Sbjct: 736 KVTQLQADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLA 795

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871
           D  + K Q+  I+++G     KA++L+ V +      F A DL + ++ KV   GGGGGR
Sbjct: 796 DKWKAK-QASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGR 852

Query: 872 PHMAQSGGPN 881
           P MAQ+GG N
Sbjct: 853 PDMAQAGGKN 862


>gi|262202250|ref|YP_003273458.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085597|gb|ACY21565.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 900

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/931 (36%), Positives = 488/931 (52%), Gaps = 75/931 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+SL+  +DP L+F N+GMVPFK  F G++ P +   T+VQK
Sbjct: 6   IRKRFLDHFIKAGHTEVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEQTPPFDRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR      D+D VG T RH+TFF+M GNFSFG YFK  AI  AW LLT       + + 
Sbjct: 65  CVRT----LDIDEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWTLLTGSVENGGYGIS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ TVY +D+EA  +W+   G+ A +I R    DN+WSM   GPCGPCSEIF+D+G 
Sbjct: 121 PDKLWPTVYLDDDEAEAIWRDEIGVPAQRIQRRGMKDNYWSMGVPGPCGPCSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E+     K +  IL   PK +IDTGMG+ER+A
Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGAGGAKDDYEILGPLPKKNIDTGMGIERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSS 283
            +LQ   N Y+ DL K +I  + +VTG  Y   N            V  RVI DH R+S+
Sbjct: 239 CLLQGVDNVYETDLLKPIIDLAAEVTGRAYGAGNHDDRGSAAHEDDVKFRVIADHTRTSA 298

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            LI DG+LP N+GRGYVLRR++RR +  ARLLG  EP M   +      M  +YPEL + 
Sbjct: 299 MLIGDGVLPGNDGRGYVLRRLLRRVVRSARLLGAEEPTMGAFIGRAIDLMSPSYPELAEQ 358

Query: 344 KLLIEETLRSEDERFGKTLDRG--LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +  I      E+  F KTL  G  L       +       ++G  AF L+DT+G P+D+ 
Sbjct: 359 RDHIVSVAVGEETSFSKTLAAGSKLFADAAAATKAAHRSTISGSDAFTLHDTYGFPIDLT 418

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            ++    GL  +D   F   + EQ+ RA+A +    +G  +   +      G T+F G+D
Sbjct: 419 LEMAAEAGLE-VDQAGFTGLMAEQKQRAKADATARKTGHADVAVYREFLDRGPTEFTGFD 477

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L        + KVL                  +V  G  V  A  G ++ V+ D+TP Y
Sbjct: 478 EL------VSEAKVL-----------------GLVADGARVPAATPGTELTVILDRTPLY 514

Query: 522 AEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AE+GGQ+ D G    G G+RL++TDVQK  + +++H  +V+ G +     ++  +D   R
Sbjct: 515 AESGGQIADVGTITTGSGVRLRVTDVQKLGKSVWLHKVVVDEGEIAEGDEVLAAVDAGWR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              +  HS TH++H AL  +LG   +Q GS   P  LRFD     P+T ++ + IE+  N
Sbjct: 575 HGATQGHSGTHMVHAALREVLGPGATQAGSLNRPGYLRFDFHQGSPLTDSQKRQIEEISN 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +  N PV T      +A + GA AL G  Y D VRVV +    GG  S  LCGGTHV+
Sbjct: 635 SAVEANYPVHTFETGLAEAKSMGALALFGENYGDVVRVVEI----GGPFSMELCGGTHVA 690

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           ++ +I  + ++ ESS+ +G+RR+EA  G  +   L  +   L  LAS LKV    V GRV
Sbjct: 691 ASSQIGPVTLIGESSVGSGVRRVEAYVGMDSFRFLSKERALLAGLASSLKVPSEEVPGRV 750

Query: 761 EEIWEEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFM--SHIISEVDSKELKSVMD 814
           E++    R    +L+ + A          +   +      +    +   +D+  L+++  
Sbjct: 751 EQLVTRLRDAEKQLEKVRADAARSAAAGLVETAEPVGSTLLVGGRLPDGLDANGLRTIAT 810

Query: 815 ALQKKI--QSGIIMLVGISKE----KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
            L+ ++  ++ +I+L  ++       K    +  T    D    A DL R +A +L GG 
Sbjct: 811 DLRGRVADRAAVIVLFSVTDAGDGTTKVPFAVATTAAARDAGIKAGDLVRETAPLL-GGR 869

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGG+P +AQ  G +    + AIA V   + +
Sbjct: 870 GGGKPDLAQGSGTDATGIETAIARVRELIAR 900


>gi|317182490|dbj|BAJ60274.1| alanyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 847

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 315/837 (37%), Positives = 468/837 (55%), Gaps = 64/837 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPNIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVLKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477
           ++EQ  R++A   G  +      + ++   Y   +F GY+      +   F   D K + 
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECCTKALGFFDSDFKEIT 472

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
              P                           Q+V V+ ++TPFYAE GG +GD G  + D
Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                I    K   G+      +++ + + +  +    D   R +++ +HSATHLL  AL
Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M   
Sbjct: 565 REVLGPHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA AL   KY + VRVVS  +++  +    LCGG HV +TG I    I+ ES + 
Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRILKESGVS 679

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G+        ++++LK+    LK    +V+  + ++ E  +  Q      
Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVMAGINKLKESVKNSQ------ 731

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K  ++V DL   KI  V+ +  ++ + D KE+   +D L+ K +  + M+     E+
Sbjct: 732 KAPVSV-DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784


>gi|228477888|ref|ZP_04062502.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228250378|gb|EEK09618.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 872

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 333/915 (36%), Positives = 504/915 (55%), Gaps = 72/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293
            V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I DG LP 
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ ++ 
Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+E F +T+D G  +LD +L++L   GKD +   D+ FKLYDT+G P+++ +++    G 
Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F  A++EQ+ RARA  +  GS              G       ++   S+F+ 
Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E                  S +  IV      +   SGQ + +VF+QTPFYAE GGQ+ D
Sbjct: 464 E-------------AETAESRLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVAD 509

Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G  I D    +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 510 HGT-ISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
              LQ  +A  K +            + + N + +I S+V   D+  L++  D  ++   
Sbjct: 743 LHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D+    +A +L ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIGEKVNVLVASKSKDV----HAGNLIKVLAPIV-SGRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            N     ++ VA  L
Sbjct: 858 ANGIQDLLSAVAEQL 872


>gi|323341496|ref|ZP_08081737.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091107|gb|EFZ33738.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 910

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 337/928 (36%), Positives = 516/928 (55%), Gaps = 83/928 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+FF+  GH+++ S+ L+P +DPTL++ NSG+   K  F G   P  
Sbjct: 31  MKELSSAQVRQMYLDFFKGKGHDVMKSAPLVPHDDPTLLWINSGVATMKKYFDGTVVPKN 90

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT E 
Sbjct: 91  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSEE 146

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D  +LY+TVY +D+ A + WK++ G+    I      DNFW + E GP GP SEIF
Sbjct: 147 WFAMDPEKLYVTVYPKDDAARECWKEV-GVEDSHIYE--AEDNFWDIGE-GPSGPDSEIF 202

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +D+G+ +       P   PG   E ERY+EIWN+VF +F  +       LP  +IDTGMG
Sbjct: 203 YDRGQEMNNVSEDDPENYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 260

Query: 230 LERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285
           LER+ +V Q    N++ DLF  +I + ++   G  + G++    ++ +VI DH R+ +F 
Sbjct: 261 LERVVSVFQHAKTNFETDLFMPIIDETAKMAKGDVHYGDDAEKDISFKVIADHARAVTFA 320

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M SAYPE+++   
Sbjct: 321 IGDGALPSNEGRGYVIRRLIRRAVMHGQKLGVEGAFLYKLVPIVGKIMESAYPEVLEQSE 380

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQD 403
            I++ +R+E++RF +TL  G+ LL  ++S    K E  L G   FKLYDT+G PL++ ++
Sbjct: 381 YIQKVIRNEEDRFNETLKDGVGLLADLISETKAKGETKLAGAGVFKLYDTYGFPLELTKE 440

Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           I   +GL  +D   F++ +++Q+ RAR     A S+G+ +G        L +    ++++
Sbjct: 441 IAADQGL-DVDKAGFDEEMQKQKERARSARGNAKSMGVQNGL-------LTDIKTPSEYV 492

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY+ L                           I+K I+   ++V + VS  + +V+FD+T
Sbjct: 493 GYEKL-----------------------AADGILKDIIVDNKLV-DVVSEGEAQVIFDKT 528

Query: 519 PFYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G     DG +  ++ DVQ    G  +H   V    ++ +    L ++
Sbjct: 529 PFYAEMGGQVADKGIIKNEDGKVVAEVKDVQHAPNGQNMHTLRV-LAEMKKDAKYRLEVN 587

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            +   ++  NH+ATHLL  AL  +LG H  Q GS + P+ LRFD T     T  EL+ +E
Sbjct: 588 VEFHDKVKKNHTATHLLDQALRDVLGEHTHQAGSLVEPNYLRFDFTKMGATTPEELEKVE 647

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN+ I  N+PV T + + E A   GA AL   KY D VRVV       G +S   CGG
Sbjct: 648 KIVNEKIWANMPVETVVTDIESAKKLGAIALFTEKYGDTVRVVK-----AGNYSMEFCGG 702

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ--- 753
            HV +T EI L  IVSES + AG+RRIEA+T + A  +L  ++  LK  A+ +KV+Q   
Sbjct: 703 NHVENTNEIGLFKIVSESGVGAGVRRIEAVTSKEAFEYLEHRNVLLKETAAEMKVAQIKE 762

Query: 754 --GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKEL 809
               V G  E+I E   K+  +  K   Q   +D+  +   +A    ++  +      +L
Sbjct: 763 VPHKVQGLQEQIKELENKVSALEDKFASQ-QAKDVFKNVQTVAGKTLIAAAVKVSGMNQL 821

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +S+ D  ++K  S +++L G +   K S+++  ++D +     A DL +  A ++ GGGG
Sbjct: 822 RSLADQWKEKSLSDVLVL-GSASGDKVSLIVAASDDAIKSGIKAGDLIKAIAPLV-GGGG 879

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGRP++AQ+GG       +A+     +L
Sbjct: 880 GGRPNLAQAGGKKPEGLPEALKAAEKWL 907


>gi|199598086|ref|ZP_03211509.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258507762|ref|YP_003170513.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199591012|gb|EDY99095.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257147689|emb|CAR86662.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 335/906 (36%), Positives = 498/906 (54%), Gaps = 73/906 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF
Sbjct: 117 WFDFDPKRLYVTVYPKDKVTKELWRKV-GVADDHIVE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           +D+G+         P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGM
Sbjct: 173 YDRGQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285
           GLER+  V+Q     ++ DLF  +I+A+E+++  K  G N    V+ ++I DH R+ +F 
Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFA 289

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  + 
Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQP 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            I++ + SE+ RF +TLD G+ LL+ +++ L   GK EI   D AFKL+DT+G P+++  
Sbjct: 350 FIQKVIESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGAD-AFKLFDTYGFPVEMTN 408

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     GL  +D+  F + +  QR RAR                  ++  G+   +  D+
Sbjct: 409 EYAEDEGLK-VDMAGFKKNMAAQRDRARKAR-------------GDRQSMGSQDTVLMDI 454

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              SKF       L  K          + ++AIV   ++ +E  +GQ  +++FD+TPFYA
Sbjct: 455 TTPSKFTGWTE--LDHK---------HATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYA 502

Query: 523 EAGGQLGDTGC-AIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           E GGQ+ D G     DG  L ++TDVQ    G  +H   V+  + + +    L++D   R
Sbjct: 503 EMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQ-PYWLSVDRLRR 561

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN
Sbjct: 562 QKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVN 621

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I   LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH +
Sbjct: 622 QKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPT 676

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGR 759
           +T  + L  I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV  +
Sbjct: 677 NTNALGLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSK 736

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMD 814
           V ++  + +  Q   A  + +L  +  +        +     ++  +      EL+ + D
Sbjct: 737 VTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLAD 796

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPH 873
             + K  S I++L   +  K   ++            A DL + ++ KV   GGGGGRP 
Sbjct: 797 EWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVG--GGGGGRPD 854

Query: 874 MAQSGG 879
           MAQ+GG
Sbjct: 855 MAQAGG 860


>gi|259649109|dbj|BAI41271.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 912

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 337/909 (37%), Positives = 500/909 (55%), Gaps = 79/909 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 32  MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 91

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K
Sbjct: 92  PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 147

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF
Sbjct: 148 WFDFDPKRLYVTVYPKDKVTKELWRKV-GVADDHIVE--AEDNFWDIGE-GPSGPDSEIF 203

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           +D+G+         P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGM
Sbjct: 204 YDRGQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 260

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285
           GLER+  V+Q     ++ DLF  +I+A+E+++  K  G N    V+ ++I DH R+ +F 
Sbjct: 261 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFA 320

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  + 
Sbjct: 321 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQP 380

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            I++ + SE+ RF +TLD G+ LL+ +++ L   GK EI   D AFKL+DT+G P+++  
Sbjct: 381 FIQKVIESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGAD-AFKLFDTYGFPVEMTN 439

Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR---AHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +     GL  +D+  F + +  QR RAR        +GS  T      L +    ++F G
Sbjct: 440 EYAEDEGLK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDT-----VLMDITTPSKFTG 493

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +  L        D K               + ++AIV   ++ +E  +GQ  +++FD+TP
Sbjct: 494 WTEL--------DHK--------------HATLQAIVVDDQLQDEVSTGQ-AQLIFDETP 530

Query: 520 FYAEAGGQLGDTGC-AIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G     DG  L ++TDVQ    G  +H   V+  + + +    L++D 
Sbjct: 531 FYAEMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQ-PYWLSVDR 589

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R+++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E 
Sbjct: 590 LRRQKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVET 649

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I   LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGT
Sbjct: 650 IVNQKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGT 704

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           H ++T  + L  I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV
Sbjct: 705 HPTNTNALGLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNV 764

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKS 811
             +V ++  + +  Q   A  + +L  +  +        +     ++  +      EL+ 
Sbjct: 765 PSKVTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQ 824

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGG 870
           + D  + K  S I++L   +  K   ++            A DL + ++ KV   GGGGG
Sbjct: 825 LADEWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVG--GGGGG 882

Query: 871 RPHMAQSGG 879
           RP MAQ+GG
Sbjct: 883 RPDMAQAGG 891


>gi|332170337|gb|AEE19592.1| alanyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 870

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 341/914 (37%), Positives = 494/914 (54%), Gaps = 74/914 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL+FF+   H ++PS+ ++  +DPTLMFTN+GMVPFK  F G   P    ++  QK
Sbjct: 6   VRKQFLDFFESKKHTIVPSAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNARLSDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT+   +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKIDKDSLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V+        D D+EAF +WK+   +  D+II     DNFW M   GPCGPCSEI  D
Sbjct: 126 VSVFEGDKEDGLDRDQEAFDIWKQ--RIDEDRIIDGNKKDNFWEMGAQGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               + +    G    + +    +EIWNLVFMQ+ +        LP   +DTGMG ER+ 
Sbjct: 184 IRSAEEKAKVDGKTLINMDHPHVVEIWNLVFMQYNRLADGSLVKLPNQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292
            VLQ   +NYD D+F  L+   E +T  K   +  ++   RVI DH+R+ SF IADG LP
Sbjct: 244 MVLQGVQSNYDTDVFTPLMSEIETITNSKCGNDEEIDIAVRVIADHVRAVSFSIADGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K L+   +
Sbjct: 304 SNTGAGYVIRRILRRAIRYGFTFLDMKEPFIYKLVATLVKQMGDAFPELKSQKNLMTNVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+  F +TLD+GL+LLD V++   K + ++GD AF+LYDT+G P+D+   IL  + L 
Sbjct: 364 REEEASFLRTLDKGLLLLDNVIADT-KGDTVSGDKAFELYDTYGFPIDLTALILSEKNLK 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  AL+EQ+ R+RA      +      W  L E     +F+GYD L        
Sbjct: 423 -LDEKGFEAALKEQKDRSRA-----ATKVETDDWNILHED-AEEEFVGYDTL-------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                  + P+ +T    +            E    G+  ++VF+ TPFY E GGQ+GD 
Sbjct: 468 -------ETPVKITRYRKT------------ESKKDGELYQLVFNLTPFYPEGGGQVGDK 508

Query: 532 G-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSA 589
           G     +G  + I D  KK   + +H A   + + R T+ +    +D + R + ++NH+A
Sbjct: 509 GYLETPNGEVVYIIDT-KKENNLIIHLA---KNLPRSTDGTFKAVVDAKQRSRTAVNHTA 564

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH  L  +LG+HV Q GS +    LRFD  H   +T  ELK +ED VN  I +NL +
Sbjct: 565 THLLHQGLRKVLGTHVEQKGSMVHSGNLRFDFAHFSRVTKEELKEVEDFVNARIRENLSL 624

Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              R +  + A+  GA AL G KY D VR +          S  LCGGTHV +TG+I   
Sbjct: 625 EEQRGIPYDQAVQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDIWHF 678

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SE ++ +GIRRIEAIT   A+ +   + E    + + LK +Q  V      + E   
Sbjct: 679 KITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPVKAITSLLDENAA 738

Query: 769 KLQLIHA--KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             + + A  K K Q    DL+     I  V+F++  + ++D+  +K +   L +  +  +
Sbjct: 739 LKKQVEALIKEKAQNLSGDLAKEFTDIDGVDFLAKKV-DLDAGAIKDLAFKLGEN-KDNV 796

Query: 825 IMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +L    +E KA +   ++++L+   + NA  + R   K +  GGGGG+P  A +GG N 
Sbjct: 797 FILFATEQEGKALLSCYISKELVASKQLNAGTVVRELGKHI-QGGGGGQPFFATAGGKNP 855

Query: 883 NKADQAIAGVASFL 896
              D AIA V ++L
Sbjct: 856 AGIDAAIAEVKNYL 869


>gi|298207536|ref|YP_003715715.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83850172|gb|EAP88040.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 870

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 312/783 (39%), Positives = 437/783 (55%), Gaps = 66/783 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFLEFF+   H ++ S+ ++  +DPTLMFTN+GM  FK  F G   P    VT  QK
Sbjct: 6   IRKTFLEFFKSKKHSIVTSAPMVIKDDPTLMFTNAGMNQFKEFFLGNGDPKSSRVTDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + +++  LY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWAWELLTEVYKVNKDNLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        + D EA+  WK  + +S D+I+     DNFW M   GPCGPCSEI  D
Sbjct: 126 VTIFEGDASESLERDTEAYDFWK--NHISEDRILNGNKKDNFWEMGAQGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               + +    G    +E+  + +EIWNLVFMQF ++       LP   +DTGMG ER+ 
Sbjct: 184 LRSKEEKDKVSGAELVNEDHPQVVEIWNLVFMQFNRKADGSLEKLPAQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291
            VLQ+KT+NYD D F  LI+  E +T   Y   E  +I   RVI DH+R+ +F IADG L
Sbjct: 244 MVLQDKTSNYDTDAFTPLIKEIETITATTYGSSEKTDIA-IRVISDHVRAVAFSIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RR + Y    L   EP +  L+  L  +MG AYPEL++ + LI   
Sbjct: 303 PSNTGAGYVIRRILRRGIRYGFTFLNTKEPFIYKLVKTLTKQMGDAYPELVKQENLIYNV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F +TLD+GLVLLD ++      EI +G  AF+LYDT+G P+D+   IL  RG 
Sbjct: 363 IKEEESSFLRTLDQGLVLLDNIIEKSKSKEI-SGKKAFELYDTYGFPIDLTSLILRERGF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + ++   F+  L++QR R+R       + T    W +L +     +FIGYD L     + 
Sbjct: 422 S-LNEAEFDAELKKQRDRSRE-----ATKTETGDWVTLIDD-AEQEFIGYDHLEAQVKLT 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
             RKV  +K                            G+  ++VF+ TPFYAE GGQ+GD
Sbjct: 475 RYRKVENKK---------------------------DGEMYQLVFNLTPFYAEGGGQVGD 507

Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G     DG  + I D  KK   + VH    +      E +    +D + R + + NH+A
Sbjct: 508 KGYLESPDGDVVYIVDT-KKENNLVVH--FTKNLPKHPEATFKAVVDSKQRMRSASNHTA 564

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL ++LG+HV Q GS +    LRFD +H   +++ EL  +ED VN  I + LP+
Sbjct: 565 THLLHQALRSVLGTHVEQKGSMVHSGNLRFDFSHFSKVSAEELTQVEDFVNARIREQLPL 624

Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              R +  + A+  GA AL G KY D VR +          S  LCGGTHV++T EI   
Sbjct: 625 EEQRNIPHQKALDEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVNNTSEIRHF 678

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SE ++ +GIRRIEAI+     ++   Q++ L+ + S LK  Q + V  V  + EE  
Sbjct: 679 KIISEGAVASGIRRIEAISNDAVDTYYAKQNQILEDVKSILKNPQ-DTVKAVSSLQEENS 737

Query: 769 KLQ 771
           +L+
Sbjct: 738 ELK 740


>gi|205830481|sp|Q3AVV3|SYA_SYNS9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 890

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 334/892 (37%), Positives = 509/892 (57%), Gaps = 55/892 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           + IR+ FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 18  AEIRSAFLRFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 75

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D +
Sbjct: 76  SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDPK 131

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182
            L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D + E 
Sbjct: 132 HLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL 191

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              G+    E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 192 GDEGI--DLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 370 ETLERGEKLLSEVLDS--KPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +   T +     +     AT F GY  L              ++
Sbjct: 427 EAMEQQRQRAKAAAVSIDL-TLQDAIDQVVATQKATAFQGYQRL--------------EQ 471

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
           P         S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 472 P---------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 523 IVAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L  IE  +N  IA+   ++   M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 642 KAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +     LI A+ 
Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----I 830
           +L +        K   I     +   +  VD   L+    +L  ++  G  +++G     
Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           S + K  ++    +D++           +   L GGGGGGRP++AQ+GG +G
Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGGGRPNLAQAGGRDG 868


>gi|239629711|ref|ZP_04672742.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239528397|gb|EEQ67398.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 878

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 333/902 (36%), Positives = 503/902 (55%), Gaps = 75/902 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +T  QK
Sbjct: 6   IRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRITNAQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
            +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F  D +R
Sbjct: 66  SIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFGFDPKR 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           LY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+G+   
Sbjct: 122 LYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDRGQQFN 177

Query: 184 ------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATV 236
                 P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGMGLER+  V
Sbjct: 178 NVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGMGLERLVAV 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPA 293
           +Q     ++ DLF  +I+A+E+++  K  G    + V+ ++I DH R+ +F I DG LP+
Sbjct: 235 IQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGALPS 294

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++ + S
Sbjct: 295 NEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVIES 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+ RF +TLD G+ LL+ +++ L   GK EI   D AFKL+DT+G P+++  +     GL
Sbjct: 355 EEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTNEYAQDEGL 413

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D+  F + +  QR RAR A       G+ +K+  S+      ++F G+         
Sbjct: 414 Q-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW--------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +L +  +S+   +V   + ++++VS    +++FD+TPFYAE GGQ+ 
Sbjct: 461 ------------TELDHKHASLQTIVVN--DQLQDSVSEGTAQLIFDETPFYAEMGGQVA 506

Query: 530 DTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G     DG  L  ++DVQ    G  +H   V +G L T     L++D   R+++S+NH
Sbjct: 507 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLRRKKVSLNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I   L
Sbjct: 566 TATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDAL 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  + L
Sbjct: 626 PITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSALGL 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++  +
Sbjct: 681 FKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQAD 740

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + D  + K Q
Sbjct: 741 LKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAK-Q 799

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879
           +  I+++G     KA++L+ V +      F A DL + ++ KV   GGGGGRP MAQ+GG
Sbjct: 800 ASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGRPDMAQAGG 857

Query: 880 PN 881
            N
Sbjct: 858 KN 859


>gi|312864541|ref|ZP_07724772.1| alanine--tRNA ligase [Streptococcus downei F0415]
 gi|311099668|gb|EFQ57881.1| alanine--tRNA ligase [Streptococcus downei F0415]
          Length = 873

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 334/906 (36%), Positives = 505/906 (55%), Gaps = 77/906 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+++AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDQAIEWGYELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FDL + +L++T Y +D++ +  W    G+ A  ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDLPKDKLFVTYYPDDKDTYNRWI-ACGMEASHMVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF    K +R     LP  +IDTG 
Sbjct: 173 FDRGEDFDPDHVGLKLLAEDIENDRYIEIWNIVLSQFNADPKLDRKDYQELPSKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +V+ DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIRKVEKLSGKTYDPDGDNM-SFKVVADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVPTVGKIMESYYPEILEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I++ ++ E+E F +T+D G   L+ +L+ L  D  + L G   FKLYDT+G P+++ +++
Sbjct: 352 IQKIVKREEETFARTIDAGTGHLEELLAQLKADGKDTLEGKDIFKLYDTYGFPVELTEEM 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +G   ID   F  A++EQ+ RARA  +                  G++  +  + L 
Sbjct: 412 AQDKGYK-IDHAGFQAAMKEQQERARAAVVK-----------------GSSMGMQNETLA 453

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
           G   + E+     +K  +D      S +  I+   + V+EA +GQ+  +VF +TPFYAE 
Sbjct: 454 G---IVEESTFSYEKEALD------SSLSVIIVDNKRVQEAETGQEALLVFKETPFYAEM 504

Query: 525 GGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           GGQ+ D G  I D    +  ++ DVQK   G  +H   +    L+   +  L ID++ R 
Sbjct: 505 GGQVADKGD-IQDKAGQVLARVLDVQKAPNGQALHKVEL-LADLQVGQTYHLEIDHKRRY 562

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T+ EL+ IE+ VN 
Sbjct: 563 AVEKNHTATHLLHAALHKVIGNHATQAGSLNEEEFLRFDFTHFEAVTAQELRRIEEEVNQ 622

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I Q + V T   + + A   GA AL G KY   VRVV +     G +S  LCGGTH+ +
Sbjct: 623 QIWQAVAVKTIETDIDTAKEMGAMALFGQKYGKEVRVVMI-----GDYSIELCGGTHLGN 677

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           T EI L  IV E  I +G RRI A+TGQ+A      Q++ LK +A+ LKV Q   V  +V
Sbjct: 678 TSEIGLFKIVKEEGIGSGTRRILALTGQQAFEAFRKQEDALKKVAATLKVPQLEQVPAKV 737

Query: 761 EEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDA 815
             + E  R LQ  +   K K            + +     +I S+V   D+  L++  D 
Sbjct: 738 ASLNEANRDLQKEVAELKEKAAAAAAGDVFKDVKEAAGHRYIASQVQVSDAGALRTFADK 797

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPH 873
            ++   S +++L   +  +K +VL+   +       AV   +L  ++  +  G GGG+P 
Sbjct: 798 WKQADYSDVLVLAA-AIGQKVNVLVASKD------KAVPAGKLIKELAPIVSGRGGGKPD 850

Query: 874 MAQSGG 879
           MA +GG
Sbjct: 851 MAMAGG 856


>gi|325690091|gb|EGD32095.1| alanine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 872

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 338/930 (36%), Positives = 506/930 (54%), Gaps = 92/930 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
               G+  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   +G    ++F +TP
Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G    +   +  Q+TDVQK   G  +H   V    L    S  L ID+
Sbjct: 499 FYAEMGGQVADHGQIFDVAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEIDH 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 SRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 EVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEV 732

Query: 757 VGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             +VE + E+ R+LQ             A  ++  +V++ + H     +F++  +S  D+
Sbjct: 733 PHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQEANGH-----SFIASQVSVSDA 787

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  G
Sbjct: 788 GALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-DG 842

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GGG+P MA +GG   +     +A VA  L
Sbjct: 843 RGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872


>gi|241896592|ref|ZP_04783888.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241870184|gb|EER73935.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 888

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 346/934 (37%), Positives = 502/934 (53%), Gaps = 89/934 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R+ FL FF+  GH++ PS SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 7   MKELSSAEVRSLFLRFFESKGHKIEPSQSLIPQNDPTLLWINSGVATLKKYFDGSVVPEN 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG T RHHT FEM+GNFS G YFKE AI  AW+LLT   
Sbjct: 67  HRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEAIPWAWELLTSPE 122

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D  +LY+TVY  D++A  +W    GL  D +      DNFW + E GP GP SEIF
Sbjct: 123 WFGMDPDKLYVTVYPNDDQAKDIWLHKVGLPKDHLYE--EPDNFWDIGE-GPSGPDSEIF 179

Query: 177 FDQGE---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMS 223
           +D+GE           PGG      E ERY+EIWNLVF QF       + ++   LP  +
Sbjct: 180 YDRGEEFNDPDEAENYPGG------ENERYLEIWNLVFSQFNHLPGLTDNKDYPELPTKN 233

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLR 280
           IDTGMGLER+ +V Q    N++ DLF  LI  +E ++G  KY  ++   ++ +VI DH+R
Sbjct: 234 IDTGMGLERVVSVFQHAKTNFETDLFLPLIHKTEDISGQFKYGEDDTKDISFKVIADHIR 293

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           + +F I DG LP+NEGRGY++RR++RRA+ + R LG ++  +  L+P +   M S YPE+
Sbjct: 294 AVTFAIGDGALPSNEGRGYIIRRLLRRAVLHGRKLGISQVFLKDLVPVVGEIMISYYPEI 353

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLD 399
            +    I   + +E+ RF KTL  GL LLD V+     K  I++G +AFKLYDT+G P +
Sbjct: 354 AKNADYIASIVEAEEIRFNKTLTDGLSLLDDVIEQAKSKKGIIDGAIAFKLYDTYGFPYE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           + ++     GL  +D   F++ ++ Q+ RAR A S     G   ++   LK     +Q++
Sbjct: 414 LTEEYATDEGLK-VDRDGFDEQMKAQQERARSARSNKASMGVQNELLTGLKT---PSQYV 469

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G+                      +LT   + +V  IV   ++VEEA +GQ V+ +F +T
Sbjct: 470 GWS---------------------ELTVEQTELVNLIVDN-KLVEEANAGQ-VQAIFAKT 506

Query: 519 PFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           PFYAE GGQ+ D G    +  +   ++TDVQ    G  +H   +    L       L +D
Sbjct: 507 PFYAEMGGQVADLGMIYDESGQAVAKVTDVQNAPNGQHLHTLSI-IAPLFVGKQYKLDVD 565

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                 +S NH+ATHLL   L  +LG H +Q GS +T +GLR+D T++  + S +L+ +E
Sbjct: 566 RPYHVAVSKNHTATHLLDQTLRNVLGEHTTQAGSLVTAEGLRYDFTYNGAVPSEKLQEVE 625

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           D +N  I  NLP+     + E A   GA A+   KY ++VRVVS+     G +++   GG
Sbjct: 626 DIINQKIIDNLPISWIETDIESAKKLGAVAVFTEKYGEKVRVVSI-----GDYNAEFDGG 680

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           TH +ST E+ +  IV E    AG+RRIEA+TG  A +     D  L   A  +K  Q   
Sbjct: 681 THANSTAELGMFKIVGEQGTGAGVRRIEAVTGSGAMALFKLHDSWLAKAAEQVKAPQ--- 737

Query: 757 VGRVEEIWEEYRKLQ--LIHAKR-------KLQLNVEDLSCHKIADVNFMSHIISE--VD 805
              + EI ++   LQ  L  A+R       KL     D +      +N  + I +E  V+
Sbjct: 738 ---LSEINDKISGLQTALKEAERQAASLEQKLANQEADAAFANPQKINNYTLIATEMAVE 794

Query: 806 SKE-LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           S + L+S  D  ++   S +++L     +K   ++ V  E +     A DL +  A  + 
Sbjct: 795 SMDVLRSTADTWKQSTPSDVLVLAANLGDKVNLLVAVAPEAVKKGIKAGDLVKSIAPAI- 853

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGGGGRP MAQ+GG N      A    A +L++
Sbjct: 854 GGGGGGRPDMAQAGGKNPAGIADAFKQAADWLQE 887


>gi|32490983|ref|NP_871237.1| hypothetical protein WGLp234 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173144|sp|Q8D2W8|SYA_WIGBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25166189|dbj|BAC24380.1| alaS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 873

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 328/899 (36%), Positives = 508/899 (56%), Gaps = 69/899 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL FF +  H+++ SS+LIP ND TL+FTNSGM  FK+IF G +KP Y  
Sbjct: 1   MKKTTEIRNIFLNFFYEKKHKIMDSSTLIPDNDKTLLFTNSGMNQFKDIFLGFKKPKYIR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           V T Q+C+R GGKHNDL+ +G+TNRHHTFFEMLGNFSFG YFK   IQ AW+LLT  K F
Sbjct: 61  VATAQRCIRVGGKHNDLNMIGKTNRHHTFFEMLGNFSFGSYFKSDTIQFAWELLTSKKWF 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGP 171
           DL + +L +T+Y +D E++ LW + + ++   II I         +DNFW+M +TGPCGP
Sbjct: 121 DLSKEKLIVTIYYKDIESYNLWVEKTNINPKNIIFIKDKNNILYNSDNFWTMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           CSEIF+  G+ I           E YIEIWNLVFMQF      +   LP  SIDTGMGLE
Sbjct: 181 CSEIFYFFGKSI--NYKNIKIYDEEYIEIWNLVFMQFNLHLNGKLSRLPITSIDTGMGLE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADG 289
           R++ VLQ+  +NY IDLFK LI    ++  +K    NI N+  R+I DH+RS+ FLI DG
Sbjct: 239 RISCVLQKVNSNYSIDLFKKLIYEISKIIEIK----NIKNYSLRIIADHIRSAIFLIYDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+ EGRGYVLRRI+RRA+ +   +         L+      M     ++I+ K  IE 
Sbjct: 295 VIPSKEGRGYVLRRIIRRAIFHGNYILNKSCFFYKLVSPAINIMSYIDSKIIKKKKEIEN 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            ++ E++ F  ++ +G++ L+  L  +  + +  G++AFKL+DT G P+D+  DI C + 
Sbjct: 355 IIKEEEKIFFFSIKKGMIFLNKNLKKIKNNILK-GEIAFKLHDTFGFPIDLTNDI-CIKN 412

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D   F  A+ EQ++++  +S         K    L   Y  T+F GY  L+     
Sbjct: 413 KINVDEKGFFHAMNEQKNKSYKNS------CFNKFNLKLLNNY-CTKFCGYSYLK----- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                  C+   +++ N             E ++E    Q+  ++ D+TPFY E+GGQ+G
Sbjct: 461 -------CESQILNIYN-----------LKEEIKEIKENQEGIIILDKTPFYGESGGQVG 502

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D+G     DG+   + D  KK    F H+  V +GIL+    +   ++   R ++S+NHS
Sbjct: 503 DSGEIKSKDGV-FSVIDT-KKLGNYFYHYGKVIQGILKINNKITAYVNKIKRNKISLNHS 560

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           +THLLH+A++ +L  ++ Q GS I    L FD ++ K I   ++  IE+ +N+ I  N+ 
Sbjct: 561 STHLLHYAINCLLDKNIIQKGSLICEKYLSFDFSYGKKINIEKINEIENIINEKIRDNVI 620

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + +  M+ ++A+  GA AL   KY D VRV+++     G  S  LCGGTH + TG+I   
Sbjct: 621 IHSNNMDLKNALKIGAKALFKNKYKDLVRVLNI-----GDFSIELCGGTHANRTGDIGCF 675

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I + S I +   RI+AITG+ A + +  +   + +++S +K +   +V ++E+I E  +
Sbjct: 676 VITNFSKISSDTYRIKAITGETAIAFIQKKFNDINTISSLIKSNSNEIVNKIEKITENLK 735

Query: 769 KLQLIHAKRKLQLNVE--DLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQS 822
            L+  +   K ++      L  +KI  +N     M +   E+D   L+ +++ ++  +++
Sbjct: 736 ILEKKNKNLKNKIIKNYIKLIFNKIKKINNFEIIMDYFNEEIDKIILREILNKVKTNLKN 795

Query: 823 GIIMLVGISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  I   KK ++ IV  VT +L++   A ++     K +    GGG  + A++ G
Sbjct: 796 GIVILASI---KKDNLYIVTGVTNNLVNIITAKEIISY-FKEIKSIKGGGNSYFAEAVG 850


>gi|94994635|ref|YP_602733.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|205830226|sp|Q1J5Z4|SYA_STRPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94548143|gb|ABF38189.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 872

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 333/918 (36%), Positives = 503/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y  +G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R LQ  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|296117815|ref|ZP_06836398.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969046|gb|EFG82288.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 902

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 337/922 (36%), Positives = 501/922 (54%), Gaps = 67/922 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P Y     T++
Sbjct: 17  IRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPYPNGLATSI 75

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT   D     
Sbjct: 76  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWALLTNSVDDGGFG 131

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  RL++TVY +D+EA  +W    G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 132 LEPDRLWVTVYLDDDEAADIWHDKVGVPKERIQRMGMEDNYWSMGVPGPCGPCSEIYYDR 191

Query: 180 GECIPGGLPGSSE-EGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLER 232
           G     G+ G  E +  RY+EIWNLVFMQ    E   K    IL   PK +IDTGMG+ER
Sbjct: 192 GPEY--GVEGGPEADDNRYMEIWNLVFMQNIRGEGDGKGNFEILGELPKKNIDTGMGVER 249

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----NIVNHRVIVDHLRSSSFLIA 287
           +A +LQ   N Y+ DL   +I  +E+VTG  YE       N V  RVI DH R++  LI 
Sbjct: 250 VACILQNVDNVYETDLLAPVIAEAEKVTGASYEDPKAERINDVRFRVIADHSRTAMMLIL 309

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGY+LRR++RR +  ARLLG    ++   +  +   M  +YPE+ Q +  I
Sbjct: 310 DGVTPSNEGRGYILRRLVRRIIRSARLLGAQAEVLERFMNTIMDTMELSYPEIAQNRERI 369

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
                +E++ F KTL+ G    D V +     GK  ++ GD AF+L+DT+G P+D+  ++
Sbjct: 370 LRVALNEEKSFLKTLESGTHRFDEVAAAAKSQGK-TVVKGDEAFELHDTYGFPIDLTLEM 428

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+ SF+ A+ +QR RA+A +     G  ++  +        T F GY+ L 
Sbjct: 429 AAEAGL-DVDMDSFDAAMAQQRERAKADNRAKKHGHADETLYREWVDNQPTIFTGYEEL- 486

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                  D KV+                  +V+ GE V  A  G+++EV+ D +P YAE+
Sbjct: 487 -----ASDAKVI-----------------GLVRDGEKVTSAGEGEQIEVILDHSPLYAES 524

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G     G  L + DVQK  + ++VH A V  G L    ++   +D Q R   +
Sbjct: 525 GGQMADRGRIFTGGTVLDVNDVQKIGKKLWVHKATVASGGLDLGSAVTAEVDQQWRHGAT 584

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ +++ +L  I    N  + 
Sbjct: 585 QAHTATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSADQLDEIALIANQAVD 644

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L V T   + E+A A GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + +
Sbjct: 645 SDLAVNTIETSLEEAKAMGAMALFGENYGNNVRVVEI----GGPFSIELCGGTHVAHSSQ 700

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESS+ +G RRIEA +G  A  +   +   + +++  LKV   ++ GR+  + 
Sbjct: 701 IGPVSVLGESSVGSGARRIEAYSGMDAFKYYSKEAALVDAVSKDLKVPSDDLPGRIAALT 760

Query: 765 EEYRKLQLIHAK-RKLQLNVEDLS-CHKIADVNFMSHIISE----VDSKELKSVMDALQK 818
           ++ ++ +   AK  + QL  +      +  D+N    +  +    V + +L+++   L+ 
Sbjct: 761 DKLKQAEKEIAKLHQAQLQAKSAEFVAQAQDINGFKVLTLDLPQGVAAGDLRTLATDLRN 820

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++Q+   II+L   S +K   +       +     + D+ +L  + +  G GGG+P MAQ
Sbjct: 821 RMQNEDAIIVLAAASGDKLPFIAAATKSAVARGVKSGDIVKLFGEYV-DGRGGGKPDMAQ 879

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
             G N    +Q  A V  F  K
Sbjct: 880 GAGNNPGGVEQGFAAVRDFADK 901


>gi|206901044|ref|YP_002250743.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206740147|gb|ACI19205.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 866

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 341/918 (37%), Positives = 509/918 (55%), Gaps = 76/918 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  F+++F KN H  LPS+SL+P +DPTL+FT +GMVPFK  F GQ  P  + 
Sbjct: 1   MMKSSDIRRKFIDYFVKNDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGVPPKRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TTVQKC R      D++ VG T RH TF EMLGNFSFG YFK  AI  A++ LTKE  +
Sbjct: 61  ITTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGI 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
              +L+I+VY+ED+EA+ +W K  G+  ++I+R+   DNFW     TGPCGPCSEI++D 
Sbjct: 117 PVSKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDF 176

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G        C PG      +  +R++EIWNLVFM +      +   LP+ +IDTGMGLER
Sbjct: 177 GPKTKEEENCKPG------DPCDRFMEIWNLVFMAYYMDEDGKLSPLPQKNIDTGMGLER 230

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           + TV++  +N ++ DLF  +IQ  + +     E ++    R+I DH+R  +FL+ DG++P
Sbjct: 231 ITTVVEGVSNVFETDLFLPIIQEIKNII----ENSDPTTERLISDHIRGITFLMGDGVVP 286

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RR++  A   G  EP +  L+P +   M  AYPELI  K  I++ L 
Sbjct: 287 TNEGRGYVLRRLIRRSLRRAYKHGIKEPFLYKLVPVVVEIMKEAYPELIDRKDYIQKVLI 346

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F +TL++GL LL+     +  +++++G+ AFKLYDT+G P+++ Q+I    G   
Sbjct: 347 REEEQFLRTLEQGLALLEDYFKKVS-NKVVSGEFAFKLYDTYGFPIELTQEIAGEEGFK- 404

Query: 413 IDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           IDI  FN+ +EEQR +ARA           S + E++++        T+F+GYD L    
Sbjct: 405 IDIDEFNKYMEEQREKARASMEEKLEESFISLSDEEVYYM--RNLPKTEFVGYDTLETE- 461

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S+++  +   G+  +  + G++V  + D+TPFYAE GGQ
Sbjct: 462 ---------------------SNVLFFV--GGKHGKNILEGEEVYFLMDKTPFYAEGGGQ 498

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G      + ++I DV+K  E   +H   V +G  +    +   +D + R     +H
Sbjct: 499 VSDKGKVYNSEVEVEILDVKKLGEDFIIHRGKVLKGEFKEGQIVKAEVDKEKRYHTMRHH 558

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL   LG+HV Q+GS ++P+ LRFD TH  P++  +LK IE  VN+ I  N 
Sbjct: 559 TATHLLHSALREYLGTHVMQSGSLVSPEFLRFDFTHHSPLSYEDLKIIEKKVNENILANH 618

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL   KY   VRV+ ++       S  LCGGTHV  TGEI  
Sbjct: 619 KVEKFWTTLEEARRMGAIALFTEKYQKNVRVIKIDN-----ISMELCGGTHVDYTGEIGS 673

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EI 763
            YIV E  I +GIRRI A+ G +A  +   ++E +  ++  L  S   V  +VE    E+
Sbjct: 674 FYIVKEEGIGSGIRRIFAVCGLKAWEYQKRKEEIVNKVSLLLNSSLDEVHIKVEKLLNEL 733

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQ 821
            E+ RK++ +  K  ++   E L  + +  ++  S I + +D  +  +K + D L+ K  
Sbjct: 734 KEKERKIKDLEEKV-IKREAEVL-LNNVDKIDNFSLICASLDMENDAIKRLGDYLKNK-D 790

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
             +IML     + K    ++V + L+ +   A  +  L  +    G GGG+  +AQ   P
Sbjct: 791 DNLIMLFFRPLDNKLVGTVMVGKKLISKGITAKKIVDLIGERF-NGKGGGKDTLAQISLP 849

Query: 881 NGNKADQAIAGVASFLKK 898
             N     I  +  FLK+
Sbjct: 850 KTN-----IEEIKGFLKE 862


>gi|313890705|ref|ZP_07824330.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120806|gb|EFR43920.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 873

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 338/917 (36%), Positives = 501/917 (54%), Gaps = 74/917 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEIRQMWLDFWKSKGHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T Y  D +++  W     L  D    I   +NFW +   GP GP +EIFFD+G  
Sbjct: 123 DKLYMTYYPADTDSYNRW---IALGVDPSHLIPLEENFWEIG-AGPSGPDTEIFFDRGPA 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMA 234
              E I   L     E +RYIEIWN+V  QF    K    E   LP  +IDTG GLER+ 
Sbjct: 179 FDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPKVPRSEYKELPSKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +IQ  E+++G  Y+  G+N+ + +VI DH+R+ SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIQEVEKLSGKTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG TE  +  L+  +   M S YPE+++ +  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMTSYYPEILEKRDFIEKIIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++    G
Sbjct: 358 REEETFARTIDAGSGHLDQLLTQLKEAGKDTLEGKDI-FKLYDTYGFPIELTEEMAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              +D   F  A++EQ+ RARA  +  GS              G        ++  S+F 
Sbjct: 417 YR-VDHEGFKAAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIVEPSEFS 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            ++  +  +   I + N          ++ E+V E   GQ + +VFD+TPFYAE GGQ+ 
Sbjct: 463 YQEETLDAKLSVIIVDN----------ERSEMVSE---GQAL-LVFDRTPFYAEMGGQVA 508

Query: 530 DTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           D G    A GD +  ++ DVQK   G  +H   V    L       L ID++ R  +  N
Sbjct: 509 DHGLIKNAAGD-VLAKVVDVQKAPNGQALHTVEV-LASLSINAIYTLDIDHKRRYAVEKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   
Sbjct: 567 HTATHLLHAALHKVIGQHATQAGSLNEETFLRFDFTHFEAVTAEELRRIEEEVNQQIWNA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V T   + + A + GA AL G KY   VRVV++     G +S+ LCGGTH+ +T EI 
Sbjct: 627 LSVTTVETDVDTAKSMGAMALFGEKYGKLVRVVTI-----GDYSAELCGGTHLGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IV E  I +G RRI A+TGQ+A      +++ LK +A+ LK  Q   V  +V  + E
Sbjct: 682 LFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVASLSE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + + K +            +   N  ++I +EV   D+  L++  D  ++K 
Sbjct: 742 QVRDLQKENHELKEKAAAAQAGDLFKDVKKANGHTYIATEVAVADAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    E K +VL+   +  +   +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGE-KVNVLVASRDKAV---HAGNLIKSLAPIV-SGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFLK 897
           +  +    +  V   LK
Sbjct: 857 DAGQIQALLLAVPELLK 873


>gi|117928537|ref|YP_873088.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|205829965|sp|A0LUJ2|SYA_ACIC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117649000|gb|ABK53102.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
          Length = 886

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 338/906 (37%), Positives = 493/906 (54%), Gaps = 72/906 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L FF+K  H ++PS+ L+  +DP L+F  +GM PFK  F G     +   T+V
Sbjct: 4   AEIARRWLAFFEKRDHVVVPSTPLV-ADDPELLFVVAGMQPFKPYFRGDAPAPWPRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QK +R      D+D VG+T RH TFF M GNFSFG YFKE AI LAW+LLT       + 
Sbjct: 63  QKVLRT----PDIDEVGKTTRHATFFHMCGNFSFGDYFKETAIPLAWELLTTPVADGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               RL++TVY +D+EA  +W ++ GL  D+I R    DNFWSM   GPCGPCSEI++D+
Sbjct: 119 FAPDRLWVTVYTDDDEAADIWHRVVGLPVDRIQRRGMADNFWSMGVPGPCGPCSEIYYDR 178

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLER 232
           G E   GG P ++EE  RY+E+WNLVFMQ+E      + N      LP  +IDTGMGLER
Sbjct: 179 GPEFGVGGGPVANEE--RYLEVWNLVFMQYERGPGGAKDNYPILGELPAKNIDTGMGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
           MA +LQ   N Y+ID  + ++  + ++TG +Y   G N V  R++ DH+R+ + L+ DG+
Sbjct: 237 MAAILQGVDNIYEIDTTRPILDKAAELTGQRYGSGGQNDVRLRMVADHIRAITMLVNDGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NE RGYVLRR+MRR +   RLLG  EP M  L+          YPEL +    I   
Sbjct: 297 VPSNEERGYVLRRLMRRVVRAMRLLGAREPTMHELVATAIAVFTPQYPELSRNAERIFAV 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
              E+  F  TL  G    +  +   G   +L+G+ AF L+DT+G P+D+  ++   +G+
Sbjct: 357 ADGEEASFFSTLAAGTARFEAAVREAGGG-VLSGEQAFVLHDTYGFPIDLTLEMAAEQGV 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-EKYG-ATQFIGYDLLRGSKF 468
             +D   F   + EQR RA+  +    +G  ++  +    E  G   +F GY    G   
Sbjct: 416 T-VDEEGFRALMAEQRRRAKEDAERRKTGAADRAAYRAAAELLGRPVEFTGYTERSGE-- 472

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                ++V+ ++  G  V  A +GQ+VEVV D+TPFYAE GGQL
Sbjct: 473 ---------------------AVVRGLLVDGAAVPAAHAGQRVEVVLDRTPFYAEGGGQL 511

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G       R+ + DVQ+   G+ VH   V  G +    +++  ID   R  +S +H+
Sbjct: 512 PDHGVLEFAAGRIDVDDVQQPLPGLIVHRGRVADGEITVGETVLARIDVDRRWAISRSHT 571

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH++H A    LG   +Q GS   P   RFD T+   +  + L  +E+ VND++  +L 
Sbjct: 572 ATHMVHKAFREFLGDTAAQAGSENAPGRFRFDFTNPSAVPPSVLGEVEERVNDLLLHDLE 631

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  +IM +++AIASGA A+ G KY D+VRV+S+     G  S  LCGGTHV  TG + ++
Sbjct: 632 VTAQIMRQQEAIASGAIAMFGEKYGDQVRVISI-----GDWSRELCGGTHVPHTGHLGVI 686

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQ-------DEKLKSLASFLKVSQGNVVGRVE 761
            IVSESSI AG+RRIEA+ G  A  +L  +        E+LK+ A  L      ++ R+ 
Sbjct: 687 KIVSESSIGAGVRRIEALVGLDAYRYLAREAVLVSQLAEQLKAPADELPDRIAGMLARLR 746

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS------VMDA 815
           +  +E  KL+    + +L      L+  ++ DV  ++ + + VD   + +        D 
Sbjct: 747 DAEKELEKLR----QARLLAEAPRLAAARV-DVGGLAVVAARVDGDGVDADGLRLLATDL 801

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            Q+   S +++L G++  +   V  V +E L     A +L  ++AK L GGGGGGRP  A
Sbjct: 802 RQRLGGSAVVVLAGVAGGRPVVVAAVGSEALARGVKAGELVGVAAKRL-GGGGGGRPDFA 860

Query: 876 QSGGPN 881
           Q GG N
Sbjct: 861 QGGGTN 866


>gi|169829321|ref|YP_001699479.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168993809|gb|ACA41349.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 842

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 321/857 (37%), Positives = 468/857 (54%), Gaps = 83/857 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +T  QK
Sbjct: 27  IRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRITNAQK 86

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
            +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K    D   
Sbjct: 87  SIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMGFDPEL 142

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180
           L IT++ ED+EA+ +W +  G+  +++IR+  N  FW + E GP GP SEIF+D+G    
Sbjct: 143 LSITIHPEDQEAYDVWHQEIGIPEERLIRLEGN--FWDIGE-GPSGPNSEIFYDRGVEYG 199

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E  P   PG   E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +V+Q
Sbjct: 200 SDENDPEMYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 257

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284
               N+D DLF  +I+  E+    KY+  + V+               +VI DH+R+ +F
Sbjct: 258 NVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRTVAF 317

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ +  
Sbjct: 318 AIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVTEKC 377

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401
             I+  +++E+ RF +TLD GL + + V       G D I   D AF+LYDT+G P+++ 
Sbjct: 378 EFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGAD-AFRLYDTYGFPIELT 436

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           ++     G+  +D   F  A+EEQR RARA    + S   +     L     A++F+G+D
Sbjct: 437 EEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNE--VLANLTVASEFVGFD 493

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L  +                       + + A++  G++ + A  GQ+  V+  +TPFY
Sbjct: 494 TLVAN-----------------------TEIAAMIVNGQVEKVASEGQEALVILAKTPFY 530

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GGQ+ D+G    D     + DVQK   G  +H  IVE G +  E ++   +   +R 
Sbjct: 531 AEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDDRN 590

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  VN+
Sbjct: 591 LIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNE 650

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  ++ VV   M  + A A GA AL G KY D VRVVS+     G +S  LCGG HV  
Sbjct: 651 KVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKR 705

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +V+
Sbjct: 706 SSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQ 765

Query: 762 EIWEEYRKLQL-----------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +  +Y++LQ             H+    + +  +  CH     +F        D+  L+
Sbjct: 766 ALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHS----SFYKS--RSKDNNLLR 819

Query: 811 SVMDALQKKIQSGIIML 827
            +MD L+  +   +I+L
Sbjct: 820 QMMDDLKALMPKAVIVL 836


>gi|254430394|ref|ZP_05044097.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197624847|gb|EDY37406.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 907

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 322/791 (40%), Positives = 462/791 (58%), Gaps = 54/791 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           + IR+ FL F+++ GH  +PS+SL+P +DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 20  ADIRSAFLAFYEQRGHRRMPSASLVP-DDPTVLLTIAGMLPFKPVFLGQAERPAPRA-TS 77

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L   
Sbjct: 78  SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSPA 133

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182
            L ++V+ ED EA  +W+++ G++  +IIR+   DNFW+   TGPCGPCSEI++D + E 
Sbjct: 134 NLVVSVFREDHEAEAIWREVVGVNPRRIIRMDEADNFWASGPTGPCGPCSEIYYDFRPEL 193

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              G+    E+  R+IE +NLVFMQ+ +  +     L   SIDTGMGLERMA +LQ   N
Sbjct: 194 GDDGI--DLEDDSRFIEFYNLVFMQYNRDAEGSLTPLANRSIDTGMGLERMAQILQGVPN 251

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y   E     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 252 NYETDLIYPLIETAAALAGVDYRQLEQKGQTSLKVIGDHSRAITQLIGDGVSASNLGRGY 311

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG   P +  +  A   +M  AYP+L + + +I   L  E+ RF 
Sbjct: 312 ILRRLLRRVVRHGRLLGIDRPFLKTMGEAAIAQMRQAYPQLDERRTVILAELEREEGRFL 371

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+  G  +I +GD AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 372 ETLERGEKLLADVLA-TGPRQI-SGDQAFELYDTYGFPLELTQEIAEEQGLT-VDLEGFE 428

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A ++ +     E I  ++     AT F GY+ L              + 
Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAI-DAVAADLEATAFRGYEAL--------------EH 473

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
           P         S V A+V  GE  E A +G  V++V D TPFY E GGQ+GD G  +G G 
Sbjct: 474 P---------SCVLALVVNGEPAERAAAGDAVQIVLDSTPFYGEGGGQVGDRGVLLGGGD 524

Query: 540 RLQI-------TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
           +  +        +   +   +FVH   VERG L     +   +D   RR+   NH+ATHL
Sbjct: 525 QTAVDAGVIVSIEAVSRNRSVFVHSGRVERGALAVGDLVTARVDGACRRRAQANHTATHL 584

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++   + Q GS +  D LRFD    + +T  EL+ IE  +N  I++   +V  
Sbjct: 585 LQAALKQVVDPDIGQAGSLVDFDRLRFDFHCPRAVTPEELERIEALINAWISEGHALVVE 644

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A A+GA A+ G KY + VRVV V        S  LCGGTHV++T EI +  IV+
Sbjct: 645 EMAIDQARAAGAVAMFGEKYGEVVRVVDVP-----GVSMELCGGTHVANTAEIGVFKIVA 699

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES + AGIRRIEA+ G    S+L  +D  +K+L    K   G +V RV  + ++ +  Q 
Sbjct: 700 ESGVAAGIRRIEAVAGPAVLSYLQERDAVVKALGDRFKAQPGEIVERVTALQDDLKASQK 759

Query: 772 -LIHAKRKLQL 781
            L  A+++L L
Sbjct: 760 ALASARQELAL 770


>gi|94990711|ref|YP_598811.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|205830225|sp|Q1JG77|SYA_STRPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94544219|gb|ABF34267.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 872

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 332/918 (36%), Positives = 502/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R  Q  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|300811577|ref|ZP_07092061.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497437|gb|EFK32475.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 877

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 338/918 (36%), Positives = 507/918 (55%), Gaps = 70/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           + QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DL
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+
Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E+++ G KY  N  + ++ ++I DH+R+ SF I DG 
Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I + 
Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++      +D+ ++G  AFK++DT+G P ++  +    +
Sbjct: 356 VKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F+  +E Q+ RAR     L S G+ ++    +K+K          +     
Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGV 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           + +E                 S +V  IV   ++V++A  G+K  ++FD+TPFYAE GGQ
Sbjct: 466 YEEE-----------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        L  ++ DVQ       +H   V   +++ + +  L ID   R  L  
Sbjct: 507 VADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQ-TYKLKIDRARREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I +
Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T   + E     GA AL   KY D+VRVV ++       S   CGGTH  +T +I
Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T + A  +L  + + L  + + +K ++ + +  ++  + 
Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLASRSDILDQIQAQVKATKADGIQSKIASLQ 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R  +  +A  + Q+N             + D+  ++ I       +L+ + D  + +
Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L G   E KA++LI + +  LD+   A DL +  A +  GGGGGGRP+MAQ+G
Sbjct: 801 GKSDVLIL-GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFL 896
           G        AI    S L
Sbjct: 859 GKKPEGLQDAIDAAVSQL 876


>gi|326336584|ref|ZP_08202753.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691249|gb|EGD33219.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 877

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 326/869 (37%), Positives = 477/869 (54%), Gaps = 77/869 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP  + V   QK
Sbjct: 6   IRQQFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEYFLGNAKPKQKRVVDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEVYRIPKENLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV++         D+EA+ +WK+   ++ D I+     DNFW M + GPCGPCSEI  D
Sbjct: 126 VTVFEGSPEEGVPLDQEAYDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     +PG    + +  + IEIWN VFM+F ++       LP  ++DTGMG ER+ 
Sbjct: 184 IRSEEEKAEIPGRDLVNRDHPQVIEIWNNVFMEFNRKADGSLEKLPAHNVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--------VNHRVIVDHLRSSSFL 285
            VLQ+K +NYD D+F  LI   E++T  KY  G N+        V  RV+ DH+R+ +F 
Sbjct: 244 MVLQKKQSNYDTDVFTPLIHKVEEITKSKYSNGTNVTPEQEEINVAIRVVSDHIRAVAFA 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MGS +PEL + +
Sbjct: 304 IADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLSKQMGSTFPELEKQQ 363

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LI   ++ E+  F +TL++GL++LD V+     D+ L+G  AF+LYDT+G P D+   I
Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNNPDKQLSGSKAFELYDTYGFPKDLTALI 422

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +G+  +D   F + L++Q+ R+RA      +      W  L++     +FIGYD L+
Sbjct: 423 LSEKGMT-LDERGFEENLQKQKERSRA-----AAQVKADDWVILRDD-EEEEFIGYDTLK 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + RKV  QK                            G   ++VF+ TPFY E 
Sbjct: 476 AIVRLVKYRKVESQK---------------------------DGTLYQLVFNTTPFYPEG 508

Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G     +G  + I D  KK   + +H  I E             +   +R   
Sbjct: 509 GGQVGDKGTLQAANGELIYILDT-KKENNLIIH--IAEHLPENLNDPFQAEVASLSRTLA 565

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  EL+ +E  VN  I
Sbjct: 566 EANHSATHLLHQALREVLGTHVEQKGSHVAPESLRFDFSHFAKLTQEELRKVERLVNKRI 625

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            + +P+   R +    AI SGA AL G KY D VR++          S  LCGGTHV +T
Sbjct: 626 FEKIPLEEHRNIPIRQAIESGAMALFGEKYGDHVRMIQFG------ESKELCGGTHVKNT 679

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ---GNVVGR 759
           G+I    I+SE ++ AGIRRIEAIT   A  +   Q+  L+ + + LK  Q    +++  
Sbjct: 680 GDIWFFKIISEGAVAAGIRRIEAITSAGALKYFADQEALLEGIKASLKNPQEPIKSIINL 739

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817
            EE  + +++++ +  ++  QL  E L    I  +N +  +  +  +D   LK +   L 
Sbjct: 740 QEENAQLHKEIEQLKREQAKQLK-EGLKKEFIP-INGIQCLTKQLNLDLATLKDLAFMLG 797

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           ++++   I+   + +  KA +L  + ++L
Sbjct: 798 EEVKDAFILFGTVQEGGKAMLLCYINKEL 826


>gi|324995376|gb|EGC27288.1| alanine--tRNA ligase [Streptococcus sanguinis SK678]
          Length = 872

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 340/930 (36%), Positives = 505/930 (54%), Gaps = 92/930 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I
Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459
                +  +D   F  A++EQ+ RARA      S+G+ + T + I               
Sbjct: 412 -AEEAVMTVDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  E  ++  +             + AIV     VE   SG    ++F +TP
Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G        L  Q+ DVQK   G  +H   V    L    S  L ID+
Sbjct: 499 FYAEMGGQVADHGQIFDAAGNLVAQVRDVQKAPNGQPLHTVEV-LAPLALGQSYKLEIDH 557

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R ++  NH+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE 
Sbjct: 558 SRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I + L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGT
Sbjct: 618 EVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           HV +T EI +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V
Sbjct: 673 HVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEV 732

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDS 806
             +VE + E+ R+LQ  +A+ K +           NV++ + H     +F++  +S  D+
Sbjct: 733 PHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSDA 787

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             L++  D  ++K  S +++LV    +K   +    T+D+    +A +L +  A ++  G
Sbjct: 788 GALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-DG 842

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GGG+P MA +GG   +     +A VA  L
Sbjct: 843 RGGGKPDMAMAGGSKQSAIPALLAAVAEKL 872


>gi|300870855|ref|YP_003785726.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300688554|gb|ADK31225.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 864

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 310/846 (36%), Positives = 474/846 (56%), Gaps = 60/846 (7%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DP+L+FT +GM+ FK  + G +K  Y  V T+QKC R     +DL+N
Sbjct: 19  HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74

Query: 80  VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF F G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPVERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW  A ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q        L  + IDTGMGLER+  ++Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDVDGNLTPLKNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                 +KYEGNN     ++ DHLR+  F++A+G  P+NEGRGYVLRR++RRA+  A  L
Sbjct: 255 ILNKLNVKYEGNNKTKINLLADHLRALVFVLAEGCKPSNEGRGYVLRRLLRRALKTANDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  L  A+       Y  L + +  I++ L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGAFLNELTSAVINVYKDIYDYLPKEEENIKKILKEEENKFLSTISAGMNKLYNVMEE 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
             + ++++G  AF L+DT+GLP DI ++     G   +D   F  A+EEQ+ R+R     
Sbjct: 375 NKESKVISGKDAFMLFDTYGLPFDITEEEANDHGFT-VDKKGFEDAMEEQKKRSR----- 428

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
            G+G  +K  F   E Y  T+++G           EDR          L NG+ S + A+
Sbjct: 429 -GTGEDKKSKFGFVENY-ETKYVG-----------EDRD--------SLINGIKSKIVAL 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIF 554
            + GE  +E+ S   V V+ + +PFY E GGQ+GD G   I  G +L++ D QKK E   
Sbjct: 468 YENGE-KKESASSSNVAVITESSPFYGEMGGQVGDNGFIEISSGEKLKVLDTQKK-ENTI 525

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H        L+    + L +++  R  +  NH+ATH+L   L   LG+H++Q GS +  
Sbjct: 526 IHIVDCGNKTLKVGEEIKLIVNFDRRSAIRKNHTATHILQKVLELTLGNHINQAGSFVCE 585

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D LRFD TH   I    L +IE+ VN+I+ +++P V + M +E+AIASGA AL G KY D
Sbjct: 586 DYLRFDFTHPDSINEETLINIENKVNEIVFKSMPAVIKYMPKEEAIASGAKALFGEKYPD 645

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VR++ +    G   S  LCGG+H+++T E+   +IVSE S+ +G+RRIEAITG  A   
Sbjct: 646 TVRILDI----GEGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLNAARE 701

Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVED 785
                 K+KSL+  L  ++   +  R E +  E +KLQ  + + K           N ED
Sbjct: 702 ATNLFNKVKSLSHILNANKIDELTTRAENLQTEIKKLQKENKQLKTSGSSSKAFIDNCED 761

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           L+  K  ++ F      + D K+++   D ++++++  I  ++  +     S+++ VT  
Sbjct: 762 LNGIKFYNLEF------DEDIKDIRLYADTIKERVKDSIAFMISKTNN---SIIVQVTGK 812

Query: 846 LLDRFN 851
            L   N
Sbjct: 813 ALKEKN 818


>gi|311894842|dbj|BAJ27250.1| putative alanyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 888

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 343/930 (36%), Positives = 517/930 (55%), Gaps = 83/930 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L FF++ GH ++PS+SL+  +DPTL+  N+GMVPFK  F G+ KP +   T+V
Sbjct: 4   AEIRRRWLRFFEERGHTVVPSASLV-ADDPTLLLVNAGMVPFKPYFLGEIKPQFSRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG+T RH +FF+M GNFSFG YFKE AI+ AW+LLT       + 
Sbjct: 63  QKCVRT----LDIEEVGKTTRHGSFFQMCGNFSFGDYFKEGAIKFAWELLTSPVADGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L+  RL+ITVY +D+EA ++W+++ G+ A++I R+   DNFWSM   GPCGPCSEI +D+
Sbjct: 119 LEPERLWITVYQDDDEAERIWREVIGVPAERIQRLGMKDNFWSMGVPGPCGPCSEINYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERF----ILPKMSIDTGMGLERM 233
           G    G   G +  GERY+EIWNLVFMQ+E+   + ++ F     LP  +IDTG+GLER+
Sbjct: 179 GPAY-GEEGGPAVNGERYLEIWNLVFMQYERGHGDGKDGFEILGDLPSKNIDTGLGLERL 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A VLQ   N ++ID  + ++  + ++TG  Y  +  + V+ RV+ DH R++  L+ DG+ 
Sbjct: 238 AAVLQGVDNLFEIDTSRMILDRAAELTGHTYGADHRSDVSLRVVTDHFRTALMLVGDGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRRI+RRA+   RLLG TEP+   L+      M   YPEL   +  IE  +
Sbjct: 298 PGNEGRGYVLRRILRRAIRNMRLLGATEPVAKDLIDISIKAMAPQYPELETDRKRIETVV 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  LLD  ++   +    +L+G+ AFKL+DT+G P+D+  ++   +G
Sbjct: 358 VAEENAFLQTLRSGTSLLDAAVTETKQSGGAVLSGEQAFKLHDTYGFPIDLTLEMAEEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468
           L  +D   F + ++EQR RA+A +    +G  +   +  + ++ GA+ F GY        
Sbjct: 418 LQ-VDEAGFRRLMQEQRDRAKADAKAKKTGHADVAAYREVADRAGASVFTGYAH------ 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                           T G +++V  +V  G     A  G +VE++ D+TPFYAE GGQL
Sbjct: 471 ----------------TEGEATVVGLLVD-GVPSPAATEGDEVELILDRTPFYAEGGGQL 513

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G   +  G  +++ DVQ+   G+ VH   V  G +    S   TID   RR +S  H
Sbjct: 514 ADHGRIRLDSGAVVEVRDVQQPVPGVIVHSGGVLFGEVVLGASAYATIDTDRRRAVSRAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL H AL   LG   +Q GS   P   RFD      +  + L  +E  +N+++ + L
Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENAPGRFRFDFGSPAAVPGSVLTDVEQKINEVLVREL 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V   +M  ++A   GA A+ G KY D VRVV++     G  S  LCGGTHV +T ++ L
Sbjct: 634 DVTAEVMTMDEARKQGAIAMFGEKYGDSVRVVTI-----GDFSKELCGGTHVGNTAQLGL 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESSI +G+RR+EA+ G  A   L  +   +  L   +K       GR EE+ E  
Sbjct: 689 VKLLGESSIGSGVRRVEALVGVDAYKFLAREHTVVAQLTELVK-------GRPEELPE-- 739

Query: 768 RKLQLIHAKRK-LQLNVEDLSCHKI-----------ADVNFMSHIISEV----DSKELKS 811
            K+  + AK K  +  +E     K+            DV  ++ + + V     + EL+ 
Sbjct: 740 -KISGMLAKLKDAEKEIERFRAEKVLQAAAGLAEGAEDVRGVALVAARVGDGTGADELRK 798

Query: 812 VMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           ++  ++ ++ S   ++    ++ ++  +V I   ED   R   A +L R +AK L GGGG
Sbjct: 799 LVLDVRARLGSRPAVVAAFTVANDRPLTV-IATNEDARGRGIKAGELVRAAAKTL-GGGG 856

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG+  +AQ GG N      AI  V + + +
Sbjct: 857 GGKDDVAQGGGTNPAAVADAIEAVRALVAE 886


>gi|319952367|ref|YP_004163634.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319421027|gb|ADV48136.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 871

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 347/922 (37%), Positives = 497/922 (53%), Gaps = 89/922 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ FLEFF+   H+++ S+ ++  +DPTLMFTN+GM  FK  F G   P    VT  QK
Sbjct: 6   IRSKFLEFFKDKEHKIVASAPMVIKDDPTLMFTNAGMNQFKEFFLGNTVPKDTRVTDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT    +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAITWAWEFLTDVCKIDKTSLY 125

Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           +TV+         D+D EA  LWK I  +   +I+     DNFW M + GPCGPCSEI  
Sbjct: 126 VTVFEGSKDADNLDQDSEALALWKNI--VPESQILFGNKKDNFWEMGDQGPCGPCSEIHV 183

Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D    + +    G    + +  + +EIWNLVFMQ+ ++   +   LP   +DTGMG ER+
Sbjct: 184 DIRSAEEKAKVSGASLVNNDHPQVVEIWNLVFMQYNRRANGQLESLPAKHVDTGMGFERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291
             V+Q   +NYD D+F  +I+  E +T   Y  +  ++   RVI DH+R+ SF I+DG L
Sbjct: 244 CMVMQGVQSNYDTDVFTPIIREIEAITKSTYGKDEKIDIAIRVIADHIRAVSFSISDGQL 303

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP M  L+  LC  MG+A+PEL   K LIE  
Sbjct: 304 PSNTGAGYVIRRILRRAIRYGFTFLDTKEPFMYRLVNVLCDSMGAAFPELKNQKQLIENV 363

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F KTLD+GLVLLD ++S+    +I++G  AF+LYDT G P+D+   IL  RGL
Sbjct: 364 IKEEEHSFLKTLDQGLVLLDSIISN-ADTKIIDGRKAFELYDTFGFPIDLTALILSERGL 422

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A++EQ+ R+R+      S  +++ W  L       +FIGY+ L  +  + 
Sbjct: 423 -NLDEKGFDVAMQEQKKRSRS-----ASEISKEDWTVLSSDL-EQEFIGYEFLESNVKLV 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           + RKV  +K                            G++ + VF+ TPFYAE GGQ+GD
Sbjct: 476 KYRKVTSKK---------------------------DGEQYQFVFNLTPFYAEGGGQVGD 508

Query: 531 TG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G    A GD I +  T   KK     +H A      +R     V  +D + RR+   NH
Sbjct: 509 KGYLEAANGDVIYILDT---KKENNETIHFAKNLPKEVRETFKAV--VDQKQRRRTEANH 563

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+HV Q GS +    LRFD +H   +T+ EL  +E  VN  I  NL
Sbjct: 564 TATHLLHQALREILGAHVEQKGSAVHSKYLRFDFSHFSKMTADELAEVERFVNARIEGNL 623

Query: 648 PVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P+   R +  + AI  GA AL G KY D VR +          S  LCGGTHV +TG+I 
Sbjct: 624 PLEEGRNIPMQTAIEQGAMALFGEKYGDAVRTIRFG------KSIELCGGTHVKNTGDIW 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I SE ++ +GIRRIEAIT    +      +  L  +   L  S+ + V  +  + EE
Sbjct: 678 HFKIKSEGAVASGIRRIEAITSDAVKDFYSENNNVLSEVKHLLNNSK-DPVKALSSLQEE 736

Query: 767 YRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-----SKELKSVMDAL 816
             KL+     L+  K K   N++    ++I  +N +  +  +VD      K+L   M   
Sbjct: 737 NAKLKKEVEGLLRDKAK---NLKGDLLNEIQSINGIDFLAKKVDLDAGGIKDLSFEMG-- 791

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM 874
             + +  + +L+    E KA +   ++++L+     +AV + R   K++  GGGGG+P  
Sbjct: 792 --QNKDNLFLLLAAENEGKALLSCYISKELVANKELSAVTVVRELGKLI-QGGGGGQPFF 848

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           A +GG N     +A+    ++L
Sbjct: 849 ATAGGKNPEGIAEALEQAKNYL 870


>gi|227534477|ref|ZP_03964526.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187876|gb|EEI67943.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 914

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 335/910 (36%), Positives = 506/910 (55%), Gaps = 77/910 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 34  MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDN 93

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K
Sbjct: 94  PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 149

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF
Sbjct: 150 WFGFDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIF 205

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           +D+G+         P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGM
Sbjct: 206 YDRGQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 262

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285
           GLER+  V+Q     ++ DLF  +I+A+E+++  K  G    + V+ ++I DH R+ +F 
Sbjct: 263 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFA 322

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  + 
Sbjct: 323 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQ 382

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            I++ + SE+ RF +TLD G+ LL+ +++ L   GK EI   D AFKL+DT+G P+++  
Sbjct: 383 FIQKVIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTN 441

Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           +     GL  +D+  F + +  QR RAR A       G+ +K+  S+      ++F G+ 
Sbjct: 442 EYAQDEGLQ-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW- 496

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                +L +  +S+   I+   + ++++VS    +++FD+TPFY
Sbjct: 497 --------------------TELDHKHASL--QIIVVNDQLQDSVSEGTAQLIFDETPFY 534

Query: 522 AEAGGQLGDTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           AE GGQ+ D G     DG  L  ++DVQ    G  +H   V +G L       L++D   
Sbjct: 535 AEMGGQVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLERGQQYWLSVDPLR 593

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  V
Sbjct: 594 RKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIV 653

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I   LP+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH 
Sbjct: 654 NQKIWDALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHP 708

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
           +++  + L  I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  
Sbjct: 709 TNSNALGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPS 768

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++  + +  Q   A  + +L  +  +       ++  +  ++  +      EL+ + 
Sbjct: 769 KVTQLQADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLA 828

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871
           D  + K Q+  I+++G     KA++L+ V +      F A DL + ++ KV   GGGGGR
Sbjct: 829 DKWKAK-QASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGR 885

Query: 872 PHMAQSGGPN 881
           P MAQ+GG N
Sbjct: 886 PDMAQAGGKN 895


>gi|104774413|ref|YP_619393.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423494|emb|CAI98396.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 866

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 337/910 (37%), Positives = 505/910 (55%), Gaps = 70/910 (7%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T+ QK +R 
Sbjct: 2   FLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRITSSQKSIRT 61

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYIT 128
               ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DLD+ +LY+T
Sbjct: 62  ----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDLDKDKLYVT 117

Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-------E 181
           VY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G       E
Sbjct: 118 VYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVPE 174

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+ ++LQ+  
Sbjct: 175 DDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERVLSILQDAP 232

Query: 242 NNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N++ DLF  +I A+E+++ G KY  N  + ++ ++I DH+R+ SF I DG LP N GRG
Sbjct: 233 TNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGALPGNTGRG 292

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA    R LG     +  L+P +   M S YPE+      I + +++E++RF
Sbjct: 293 YVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKVVKNEEDRF 352

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G TL+ GL LLD ++      +D+ ++G  AFK++DT+G P ++  +    +GL  +D  
Sbjct: 353 GATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDKGLK-VDKD 411

Query: 417 SFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F+  +E Q+ RAR     L S G+ ++    +K+K          +     + +E    
Sbjct: 412 GFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGVYEEE---- 458

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S +V  IV   ++V++A  G+K  ++FD+TPFYAE GGQ+ D G   
Sbjct: 459 -------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQVADHGDIY 503

Query: 536 GDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                L  ++ DVQ       +H   V   +++ + +  L ID   R  L  +HSATHLL
Sbjct: 504 DQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQ-TYKLKIDRARREGLRHSHSATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I + + V T  
Sbjct: 563 HAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWEAIQVKTTE 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E     GA AL   KY D+VRVV ++       S   CGGTH  +T +I +  I+SE
Sbjct: 623 TDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQIGVFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQL 772
            +I AG+RRIEA+T + A  +L G+ + L  + + +K ++   +  ++  + EE R  + 
Sbjct: 678 QAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQEELRSAEK 737

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +A  + Q+N             + D+  ++ I       +L+ + D  + + +S +++L
Sbjct: 738 QNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEGKSDVLIL 797

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G   E KA++LI + +  LD+   A DL +  A +  GGGGGGRP+MAQ+GG N     
Sbjct: 798 -GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAGGKNPEGLQ 855

Query: 887 QAIAGVASFL 896
            AI    S L
Sbjct: 856 DAIDAAVSQL 865


>gi|38233936|ref|NP_939703.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|48428504|sp|P61699|SYA_CORDI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|38200197|emb|CAE49878.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 888

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 335/916 (36%), Positives = 497/916 (54%), Gaps = 65/916 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTNHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT         
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWQLLTGTVAEGGLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W K  G+ +++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAAEIWNKKIGVPSERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFM+ E      + N +    LPK +IDTGMG+ER+
Sbjct: 181 GPEY-GAEGGPIADDNRYMEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGMGIERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ DL + +I  +E++TG  Y  N+  N   RVI DH R+   LI DG+ 
Sbjct: 240 ACILQGVDNVYETDLLRPVINVAEELTGATYGTNDDDNIRFRVIADHSRTGMMLILDGVT 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+   +  I    
Sbjct: 300 PGNEGRGYILRRLLRRIIRSAHLLGAKGKTLEKFMNTIMDTMTPSYPEIADNRERILRVA 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E++ F KTL  G  L +     +    +++L+G  AFKL+DT+G P+D+  ++    G
Sbjct: 360 ITEEKAFLKTLASGTELFEDKADQVKNSGNKVLDGAAAFKLHDTYGFPIDLTLEMAAEAG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +DI  FN  + EQR+RA+A +     G  +   +        T F GYD L      
Sbjct: 420 L-NVDIEGFNSLMAEQRARAKADNRAKKHGHADLSIYREWVDEHPTVFTGYDEL------ 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             D KVL                  ++  G  V E  +G++VEV+ + +P YAEAGGQLG
Sbjct: 473 TTDSKVL-----------------GLLSAGNKVNEIKAGEEVEVILEASPLYAEAGGQLG 515

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  +     L++ DVQK  + ++VH A V +G L     +   +D   R      H+ 
Sbjct: 516 DRGQILMGDTVLKVNDVQKIGKKLWVHKATVAQGGLSVGDVVTAQVDSDWRHAARQAHTG 575

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ I++  N  +  +  V
Sbjct: 576 THLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTESLTPRQLEEIQNITNQAVDSDWDV 635

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T   + E+A A GA AL G  Y   VRV+ V    GG  S  LCGGTHV+ + +I  + 
Sbjct: 636 NTIETSLEEAKAMGALALFGENYGSEVRVIEV----GGPFSIELCGGTHVTHSSQIGPVA 691

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+ ESS+ +G+RRIEA TG  +  +L  +   ++++AS +KV    +  R+  + ++ + 
Sbjct: 692 ILGESSVGSGVRRIEAYTGLDSFKYLAKEQALVENIASSMKVKPEELPDRIAALTQKLKD 751

Query: 770 LQ-LIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQS- 822
            +  I   R  QL  +         ++  V  ++  +S+V++  +L+S+   +++++   
Sbjct: 752 AEKAIADMRSAQLMAQATGLVAGAIEVNGVKLVAQRVSDVENMGDLRSLAADIKQRLDDV 811

Query: 823 -GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG---GGGGGRPHMAQSG 878
             ++ LVG     KA  ++  T+  +   +A   A   AK+LG    G GGG+P MAQ  
Sbjct: 812 PAVVALVGEDASGKAPFVVGATKAAV---SAGYKANAYAKILGQYIEGNGGGKPDMAQGS 868

Query: 879 GPNGNKADQAIAGVAS 894
             N +  DQ IA V +
Sbjct: 869 ARNSSGFDQGIAAVKA 884


>gi|325109123|ref|YP_004270191.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324969391|gb|ADY60169.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 869

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 332/914 (36%), Positives = 499/914 (54%), Gaps = 77/914 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L FF++ G    PS  L+P NDPT++FT +GM  FKN F G  K  +   TT QK
Sbjct: 6   LRDAYLSFFEEKGCIRRPSDVLVP-NDPTVLFTPAGMNQFKNEFLGIGKLEFTKATTCQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+ NVG T  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   LD  R
Sbjct: 65  CLRTG----DIGNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLGLDGER 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQ 179
           L +TVY +D+EAF +W+   GL  ++I R    +NFW     +    G CGPCSEI++  
Sbjct: 121 LTVTVYLDDDEAFGIWENEIGLPKNRIKREDEYENFWPAGAPTEGPDGVCGPCSEIYY-- 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237
                         G + +EIWNLVF QF +       +  LP  +IDTGMGLER A VL
Sbjct: 179 ----------HPPTGGKEVEIWNLVFTQFNRVGNPPDNLKPLPMKNIDTGMGLERTAAVL 228

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N++ID  K L +    V G+KY   G +    R I DH+R+ +  + + +LP N+
Sbjct: 229 QGVESNFEIDTLKPLCETVGDVLGVKYNFGGEHGRAMRRIADHVRAVTMCVHENVLPDNK 288

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            +GYV+R+++RRA+  + L+G  EP++  L+P +   +G  YPEL +    ++  ++ E+
Sbjct: 289 EQGYVVRQLLRRAVLESYLIGKQEPVLHLLVPKVVELLGKPYPELKETVGSVQSAIQEEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             F  T++RGL   +  L       I++G  AF+L+ T G  L  + D L AR    +D 
Sbjct: 349 NAFLDTIERGLNRFERCLDGAKSSGIISGKDAFQLHTTDGF-LYELTDALAARHNLKVDR 407

Query: 416 ISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           I F++ +EE    S A      +  G  + I    ++  G T+F+GY+            
Sbjct: 408 IGFDKLMEEHGIISNAGKQKSVMAEGPLDAI----RKTSGGTEFLGYE------------ 451

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQK--VEVVFDQTPFYAEAGGQLGD 530
                             V  I+ + ++V+E    G +  + VV D+TPFYAE+GGQ+GD
Sbjct: 452 -----------ATSAEGKVVGIIAEKQLVDEVTEVGHRDVIAVVIDRTPFYAESGGQVGD 500

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    DGI   + D QK  + +++H   +++G L    +L   +D + R  +   HSAT
Sbjct: 501 IGSLTADGIEFVVQDTQKDGD-LWLHIGHLKQGKLEVGQTLTAEVDGERRDAIRRAHSAT 559

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+HHAL   LG + +Q GS +  D LRFD  H KP++  EL+ IED VN  IA    V 
Sbjct: 560 HLMHHALRETLGENATQRGSKVQQDELRFDFAHKKPVSPEELRRIEDMVNSHIANGNDVA 619

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  EDA A GA AL G KY D VRVVS+     G +S  LCGGTH+S+TG++ +  I
Sbjct: 620 TDLMKIEDARAKGAMALFGEKYPDLVRVVSM-----GDYSIELCGGTHLSNTGQVGVFKI 674

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR- 768
           ++E  +  G+RR+ A TG++A      ++E L+ L   LKVS   +++ +V+ +  E + 
Sbjct: 675 IAEEPVAKGVRRLVAYTGEKAIEESRKKEELLRELMLELKVSAPEDLIRKVQSLQAELKD 734

Query: 769 -KLQLIHAKRK-LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            K +L    R+ +   V+ L  +  K+ DV  ++     VD   L+   D L+ K ++ +
Sbjct: 735 TKKKLSDQMRQSVGDEVDTLLQNAEKVGDVAVITFQPENVDKDVLRDYADRLRTKQKAAV 794

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++   I  + K ++L  V++DL+ +  NA D  + +AK++  GGGGGRP +A++GG + +
Sbjct: 795 LLAAEI--DGKVALLAAVSKDLVKQGVNASDCVKAAAKLV-KGGGGGRPDLAEAGGKDPS 851

Query: 884 KADQAIAGVASFLK 897
           K  +A+   A F +
Sbjct: 852 KISEALKAGAEFYR 865


>gi|323486958|ref|ZP_08092273.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum
           WAL-14163]
 gi|323399730|gb|EGA92113.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum
           WAL-14163]
          Length = 817

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 319/849 (37%), Positives = 472/849 (55%), Gaps = 53/849 (6%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L
Sbjct: 1   MTTCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGL 56

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY +VY ED+EAF +W K  G+  ++I R    DNFW     GPCGPCSEI++D+G
Sbjct: 57  DPDRLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRG 115

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   E +RYIE+WN VF QF          L   +IDTGMGLER+A V+Q
Sbjct: 116 EKYGCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQ 175

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
           E  + + +D  K L+    ++   KY+ N+   V+ R++ DH++S +F+I+DGI+P+NEG
Sbjct: 176 EVDSLFTVDTNKALLDRVCELAHTKYQENHETDVSLRIVADHIKSCTFMISDGIMPSNEG 235

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG     M  L   +       YPEL +   +I + L  E++
Sbjct: 236 RGYVLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEED 295

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F KT+D+GL +L  + + + K+   +L+GD AFKLYDT+G P+D+ ++IL  + L+ +D
Sbjct: 296 KFNKTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LD 354

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+++Q+ +ARA          +   +   +    T+F GY      K  +E   
Sbjct: 355 EDGFTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGY-----GKLAEE--- 406

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S +  +  + EIVE    GQ   ++  +TPFYA  GGQ  D G  
Sbjct: 407 ---------------SEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVI 451

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D  K   G   H   V +G+ +T  ++ L +D +NR     NHSATHLLH
Sbjct: 452 TAQDAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLH 511

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG+HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA  LPV T +M
Sbjct: 512 KALRTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVM 571

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T  I    IVSE+
Sbjct: 572 TLDEAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEA 626

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+T     ++    +++L   A  +K +   +  ++E + +E + L   +
Sbjct: 627 GIAAGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSEN 686

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G++++  
Sbjct: 687 EKLKSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIAS 746

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +   K   +  V  E      +A +L +  A ++ GGGGGGRP+MAQ+GG N        
Sbjct: 747 VQDGKVNLMASVTGEAQKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNP------- 798

Query: 890 AGVASFLKK 898
           AG+   LKK
Sbjct: 799 AGIPDALKK 807


>gi|323359964|ref|YP_004226360.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323276335|dbj|BAJ76480.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 889

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 328/925 (35%), Positives = 494/925 (53%), Gaps = 71/925 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I   FL+FF+K  H ++PS+SL+  +DP L+FT +GMVPF    +G   P Y    
Sbjct: 2   KTAEIAQRFLDFFEKKNHTIVPSASLV-TDDPALLFTVAGMVPFIPYLSGVVPPPYPRAA 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
            VQKC+R     ND++ VG+T RH TFF+MLGN+SFG YFKE AI+ AW+LLT       
Sbjct: 61  DVQKCIRT----NDIEEVGKTPRHGTFFQMLGNWSFGDYFKEDAIRFAWELLTAPEAEGG 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
              D + L++TVY+ED+EA  LW K+S L  ++I R+  + N+WS    GP GPCSEIFF
Sbjct: 117 LAFDPKDLWVTVYEEDDEARDLWLKLSTLPDERIQRLGKDTNYWSTGLPGPAGPCSEIFF 176

Query: 178 DQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMG 229
           D+G    I GG P + ++  RY+EIWNLVFMQ+E  N + ++       LP  +IDTGMG
Sbjct: 177 DRGPAYGIDGG-PATDDD--RYVEIWNLVFMQYEITNVRSKYDFDIVGELPAKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLI 286
           LER+A + Q   N Y+ D  + ++  + ++ G  Y      + V  R++ DH+RSS  L+
Sbjct: 234 LERIAFIKQGVDNMYETDQVRPVLDLAAKLAGKAYGAESHEDDVRLRIVADHVRSSLMLL 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P+NEGRGY+LRRIMRRA+   RLLG        L  A    M  +YPE+      
Sbjct: 294 ADGVTPSNEGRGYILRRIMRRAIRSMRLLGVEGATFPELFAASRDAMKESYPEVEADYAR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           +     +E++ F +TL  G  +LD  ++    G    L+G  AF L+DT+G P+D+  +I
Sbjct: 354 LSAYAIAEEQTFLRTLAAGSAILDQSVAEAKNGGGTTLSGSEAFLLHDTYGFPIDLTLEI 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL+ +D  +F+Q + EQR+RA+A +        ++  +      G T F GY  L+
Sbjct: 414 AEEAGLS-VDRGAFDQLMLEQRTRAKADARARKGAIADQSAYREFRALGETVFTGYTELQ 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  I+  G+  + A  GQ  E++  +T  YAE+
Sbjct: 473 -----------------------TESKVLGILVDGQGTDRASEGQIAEIITGETALYAES 509

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G  +G G  L++ DVQ+   G+  H   V  G +         +D  NR    
Sbjct: 510 GGQVADKGTIVGPGYELEVLDVQRPVPGLISHTVEVTTGEVSVGAPATTVVDALNRHSAQ 569

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL+H A+   LG   +Q GS      +RFD +    ++      IED  N+ + 
Sbjct: 570 QAHSATHLVHAAIRDTLGKTATQTGSLNRAGYMRFDFSWGSALSPETRTEIEDIANNAVR 629

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            NL V TR+M+ ++A A+GA AL G KY D VR+V +    GG  S  LCGGTHV+ + E
Sbjct: 630 DNLEVTTRVMSLDEAKAAGAMALFGEKYGDTVRMVDI----GGPWSRELCGGTHVARSSE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L+ +V E S+ A  RR+EA+ G  A   L  +   +  L++ LK  +  +  R+ E+ 
Sbjct: 686 IGLVNLVGEQSVGASNRRVEALVGLDAFRDLAAERAIVSQLSTSLKTPREQLTSRIAELA 745

Query: 765 EEY----RKLQLIHAKR---KLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816
                  +K+    A+    +L   VE  +   +  V  ++  + E   + +++S+  AL
Sbjct: 746 ANLKAAEKKIAAFEAQALTGRLPQLVE--AAISVGTVRVVAESLGEGASADDVRSL--AL 801

Query: 817 QKKIQSG----IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
           Q + + G    ++ L  ++   +A+V++V  E   +R  A      +A  + GGGGGGRP
Sbjct: 802 QVRDRLGTDPAVVALASVAG-GRATVVVVTNESARERGLAAGALAKAAAGILGGGGGGRP 860

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            +AQ GG +     QA+ G+ + ++
Sbjct: 861 DVAQGGGTDATALPQALEGIVADVR 885


>gi|330752589|emb|CBL87535.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 873

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 326/865 (37%), Positives = 480/865 (55%), Gaps = 73/865 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+   HE++ S+ ++  +DPTLMFTN+GM PFK  F G  +P  + +   QK
Sbjct: 6   IRKQFLDFFESKAHEIVSSAPMVIKDDPTLMFTNAGMNPFKEFFLGFAQPTSKRLADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK+ AI+ AW+LL   + +D  RLY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLIDIYKIDAERLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        ++D EA+ LWK I  L  D+I+  +  DNFW M + GPCGPCSEI  D
Sbjct: 126 VTIFEGSLGEKLEKDTEAYNLWKAI--LPEDRILLGSKKDNFWEMGDQGPCGPCSEIHID 183

Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                + E  PG     +++  + IE+WNLVF++F +        LPK  IDTGMG ER+
Sbjct: 184 TRPKTEWEKTPGS-ALVNKDHPQVIELWNLVFIEFNRNADGGLEKLPKKHIDTGMGFERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
             VLQ K +NYD D+F  +I   E++T   Y     + V  RVI DH+R+  F IADG L
Sbjct: 243 CMVLQGKISNYDTDVFTPIINEIEKITKYNYGVSEKSDVAIRVIADHIRTVFFAIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   +P +  L+  +  ++   +PEL + K L +  
Sbjct: 303 PSNIGAGYVIRRILRRAIRYGFTFLDQKKPFIHLLVEIISKQLSDIFPELKKEKKLAQNV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+E F KTLD+GLVLL+ V+ +L K + + GD  F+LYDT G P D+   I   RGL
Sbjct: 363 IKKEEESFLKTLDQGLVLLENVIKNL-KAKKIPGDKVFELYDTFGFPFDLTTLIANERGL 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F +A+ +Q+SR+R  +L  +G       W  +KE     +F+GYD L  +  +
Sbjct: 422 E-IDKEGFEKAMGKQKSRSRGATLSKVGD------WIVIKES-KKEEFVGYDTLESNILI 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
              RK+   K                            G   ++ FD+TPFY E GGQ+G
Sbjct: 474 TRYRKMNTNK---------------------------DGDFYQLTFDKTPFYPEGGGQVG 506

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G   + +G  L ITD  KK   + +HH   +    + ++S  + ++ + R   S NH+
Sbjct: 507 DQGYLELENGEILNITDT-KKENNLVIHHC--KSLPKKMDISFKVFVNPELRLNTSSNHT 563

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG+HV Q GS +     RFD +H   + + +LK++E  VN+ I + +P
Sbjct: 564 ATHLVHQALRFVLGNHVQQKGSMVNSKMFRFDFSHFSKLKNEQLKNVEKFVNERILEKIP 623

Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           +   R +  + A+  GA AL G KY   VR +          S  LCGGTHV +T +I  
Sbjct: 624 LEEQREIPHDKALEEGAIALFGEKYGKNVRTIRFG------KSIELCGGTHVKNTSDIWY 677

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SES++ +G+RRIEA+TG   +++   Q   LK++   LK SQ  V   +    E  
Sbjct: 678 FKIISESAVASGVRRIEAVTGSAVKNYFENQTTILKNINQLLKQSQDPVKAILNLQSENI 737

Query: 768 RKLQLIHAKRKLQ---LNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              + I A  KL+   L  E L   K I+ VNF++  I E+D++ +K +   + K+    
Sbjct: 738 FLKKEISALSKLKSKTLKSELLKEIKIISGVNFLAKEI-EIDAQGMKDLSFEIGKEFNK- 795

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848
           II++ G  K  K  +   +++ L++
Sbjct: 796 IILVFGSRKTGKPLISCYISKQLVN 820


>gi|160915324|ref|ZP_02077537.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991]
 gi|158433123|gb|EDP11412.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991]
          Length = 874

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 330/917 (35%), Positives = 502/917 (54%), Gaps = 75/917 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL++F   GH + P +SL+P NDPTL++ N+G+   K  F G EKP    +   
Sbjct: 7   NQIRQMFLDYFASKGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKNNRIANA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +     +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPQWIGFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +D +A+++W ++ G+    I++  T  NFW + E GP GP SEIFFD+GE 
Sbjct: 123 EKLYVSVYTDDHDAYRIWTEVCGVDPSHILK--TEGNFWEIGE-GPGGPDSEIFFDRGEE 179

Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234
             P GL         E +RYIE+WN+VF QF+   + ++ E   LP+ +IDTGMGLER+ 
Sbjct: 180 YDPEGLEEKLFFEEMENDRYIEVWNVVFSQFDCKPELDRSEYKELPQKNIDTGMGLERLV 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293
            ++Q    N+D DLF  +I  +E+ T   Y+ N N +  RVI DH+R+ +F +ADG L +
Sbjct: 240 CLVQGGETNFDTDLFLPIIHETEKYTSCSYQVNENKMAFRVIADHIRTVTFALADGALFS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + + L      M  L+P +   M   YP L +    I + +++
Sbjct: 300 NEGRGYVLRRVLRRAVRFGKKLKIEGAFMYKLVPVVYEIMQDFYPYLGEKLDYIAKLVKA 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF  TL  G  L+  V+    + + ++G  AFKLYDT+G P ++  ++    G   +
Sbjct: 360 EEERFQATLSDGEKLMREVMERNKETKTIDGATAFKLYDTYGFPFELTLEMAEESGYF-V 418

Query: 414 DIISFNQALEEQRSR---ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           D   F   +++Q+ R   AR     + S + + +  +L+     + F+GYD         
Sbjct: 419 DKDGFQAEMKQQKERARNAREEQESMSSQSADLMNCTLE-----STFVGYD--------- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                 C    I       ++ K  V+  E+VE+       +V+FDQT FYAE+GGQ+GD
Sbjct: 465 ---ACCCDARVI-------ALFKDGVKVDELVEDG------DVMFDQTVFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  I   +   + +  K      +H   +  G L     + L +D + R  ++ NHS T
Sbjct: 509 TG-TISKAVEAVVENTVKAPHKQHLHRVHINAGALHVGDEVSLKVDEKRRAVITSNHSCT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  ++G H++Q GS ++ + LRFD TH + ++  +L++IE+ VN+ IA +  V 
Sbjct: 568 HLLQSALKRVVGEHIAQAGSFVSDEYLRFDFTHFEKVSEEQLRNIENLVNEFIAGHYSVS 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  E+A  SGA AL   KY D VRVVS+     G  S   CGG HV++T EI +  I
Sbjct: 628 KVEMPIEEAKQSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGVCKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEEIWE 765
           +SE SI +GIRRI A TG  A       D+ L ++A+ LK+      +  V   VEE  E
Sbjct: 683 ISEESIGSGIRRITAKTGYDAYKEFAAGDQMLHAIAADLKMKGIANLEAKVANVVEEANE 742

Query: 766 EYRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             ++L  + ++        L+  +E+ + HK+   N     +S  D   LK + + L+ K
Sbjct: 743 LKKQLATLQSQMLALKANDLENTIEECNGHKLLFAN-----LSGADGNALKDIANNLKAK 797

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +  ++ L   S++K   V       + +     DL R +A ++  G GGGRP +AQSGG
Sbjct: 798 YEDIVVFLASASEDKITFVAAAGKAAVANGVKCGDLVRQAA-MICDGKGGGRPDLAQSGG 856

Query: 880 PNGNKADQAIAGVASFL 896
            + +K ++A+  V + L
Sbjct: 857 KDPSKCEEAMKFVKNML 873


>gi|227505016|ref|ZP_03935065.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198380|gb|EEI78428.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 895

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 335/925 (36%), Positives = 502/925 (54%), Gaps = 69/925 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTQHFVKTGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGLATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT       F 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWSLLTGSVEDGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA  +W +  G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAADIWHEQVGVPRERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFMQ E      + N +    LPK +IDTG+G+ER+
Sbjct: 181 GPEY-GAEGGPVADDNRYMEIWNLVFMQNERGEGIGKGNFEILGPLPKKNIDTGLGIERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EG---NNIVNHRVIVDHLRSSSFLIADG 289
           A +LQ   N Y+ DL + +I A+E++TG KY EG    + +  RVI DH R+   LI DG
Sbjct: 240 ACILQGVDNVYETDLLRPVIDAAEELTGAKYGEGASDQDNIRFRVIADHSRTGMMLILDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGY+LRR++RR +  ARLLG T P M   +  +   M  +YPE+   +  I  
Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSARLLGATAPSMERFMNTIMDTMTPSYPEIADNRERILR 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVL------SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              +E++ F KTL+ G  L D  +      S     +IL+G+ AF+L+DT+G P+D+  +
Sbjct: 360 VAIAEEKAFLKTLESGTKLFDEAVEALKSTSRAATPKILSGEKAFELHDTYGFPIDLTLE 419

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+  FN+A+ EQR RA+A +     G  +   +        T F GY+ L
Sbjct: 420 MAQEAGLE-VDMDGFNEAMGEQRRRAKADNQAKKHGHADLSLYREWVDNNPTVFTGYETL 478

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                   D K++                  +V+ G+ V E   G++VEV+ DQ+P YAE
Sbjct: 479 ------TSDAKII-----------------GLVRDGQKVNEVHEGEQVEVILDQSPLYAE 515

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  D G        L++ DVQK  + ++VH A V  G L    ++   +D + R   
Sbjct: 516 SGGQTADRGRIYAGESLLEVGDVQKIGKKLWVHKATVTAGGLDLGSTVTAEVDQKWRHGA 575

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I    N  +
Sbjct: 576 VQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSPAQLEEIALITNQAV 635

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +  V T   + E A   GA AL G  Y  +VRVV    E GG  S  LCGGTHV++T 
Sbjct: 636 DAHFAVNTIETSLEQAKQMGAMALFGENYGSQVRVV----EMGGPFSIELCGGTHVANTS 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LK+   ++  R+ ++
Sbjct: 692 EIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGISRELKIQSEDLPERIAQL 751

Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKSVMDAL 816
            E+     +++  +H K +L     D+    I    F      + + V   +L+++   +
Sbjct: 752 TEKLKAAEKQIDELH-KAQLMAQTADMIGGAITVNGFAVVSVRLPNNVSGGDLRTLATDI 810

Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           + ++  ++G+++L   ++  K   ++  T+  + R   A DL +  +  +  G GGG+P 
Sbjct: 811 KNRLGDEAGVVVLASENEGGKTPFIVGATKAAVARGIKAGDLVKTISGYV-DGKGGGKPD 869

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           MAQ  G N      A   +   L+K
Sbjct: 870 MAQGSGANAEGLQAAFNALRDELEK 894


>gi|284044488|ref|YP_003394828.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283948709|gb|ADB51453.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 888

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 343/930 (36%), Positives = 498/930 (53%), Gaps = 109/930 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TFL FFQ+  H  L S+ L+P  +DP+++ T +GM P K  F G E+P    +T+ Q
Sbjct: 8   IRETFLSFFQQREHLRLQSAPLVPTAHDPSVLLTTAGMHPLKPYFQGVEQPPATRLTSCQ 67

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC RA     D++NVG T RH T FEMLGNFS G YFKE  I  AW+L T+ F LD  R+
Sbjct: 68  KCFRA----TDIENVGNTLRHLTCFEMLGNFSIGDYFKEEVIAFAWELSTQGFGLDPERI 123

Query: 126 YITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           ++TV+  DE      DEEA +LW+K+ G+  ++I+  +  DNFW    TGPCGPCSE++ 
Sbjct: 124 WVTVFGGDEELGLGADEEAIELWQKV-GVPRERIVECSREDNFWQAGPTGPCGPCSELYL 182

Query: 178 DQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+G     P  LP    E ER++E WNLVFMQ++Q        LP  +IDTG+GL R A 
Sbjct: 183 DRGLDFGAPDDLPAG--ENERFLEFWNLVFMQYDQNPVNTLAPLPSKNIDTGLGLNRFAA 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293
           +LQ K + ++ D F  LI+  ++++G  Y  +       R++ DH R+ +FL+ADG++P+
Sbjct: 241 MLQGKESVFETDQFWPLIELGQELSGRSYGQDEATTRALRILADHSRAMTFLVADGVVPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLR 352
           NE RGY+LRR+MRRA+ + R +G  EP  +    A   + MG+AYPE+++    I + L 
Sbjct: 301 NEDRGYILRRVMRRAIQHGRRIGI-EPGFLPKFAARVEQIMGAAYPEIVEHSDAIRKWLV 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+E FG+TL++G  LLD +++   ++  E L  +  F+L+DT+G P+DI ++I     L
Sbjct: 360 AEEESFGRTLEQGTKLLDELIAQAKREGEEGLGAEDVFRLHDTYGFPIDITREIAAEHDL 419

Query: 411 AGIDIISFNQALEEQRS----------------RARAHSLGLGSGTTEKIWFSLKEKYGA 454
            G+D   F Q +++QR+                R RA  L  G+                
Sbjct: 420 -GVDEPGFEQLMDQQRARARAGAGGKGATGDGLRERAQELAGGAAFQ------------- 465

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           ++F GY                        T    + V A+        EA    +V V 
Sbjct: 466 SEFTGY-----------------------ATTAQETTVGAL--------EAEDDGRVLVK 494

Query: 515 FDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIV---ERGILRTE 568
             ++PFYA  GGQ+ D+G   CA GD  R ++ DV + A G      +V   ERG L+  
Sbjct: 495 LVESPFYAAGGGQVSDSGWVECADGD-CRAEVLDVLRVAGG--ADQVVVVRPERGALKPG 551

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D Q R     NH+ATHLLH AL   LG HV Q GS + PD LRFD TH + ++
Sbjct: 552 EHVHAVVDRQARHATEANHTATHLLHAALRRRLGGHVRQAGSAVQPDKLRFDFTHGQALS 611

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             EL+ +ED VN+ +  N PV       ++A   GA AL G KY D VR+V V     G 
Sbjct: 612 PDELRDVEDEVNEWVLANFPVRALTTTLDEAKRLGAMALFGEKYGDVVRMVEV---GDGS 668

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHV ST EI L  + +E+S  A +RRIEAITG  A   L   D  L+  A+ 
Sbjct: 669 FSRELCGGTHVRSTAEIGLFRVTAETSSAANVRRIEAITGPAAVRLLREHDGALRDAATA 728

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDL---SCHKIADVNFMSHI 800
           L+ +   V   V+++    ++L+   AK+        L+V+ L   +         ++  
Sbjct: 729 LRATPEQVPAEVDKLRVRVKELEKA-AKQGAGAGNGALDVDALVAGATEHGGGARVVAAA 787

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLS 859
           I   D K L  V D L+ K+    I+L G   + +  ++  V   L++R   A  + +++
Sbjct: 788 IELPDPKALPDVADRLKGKLGDAAIVL-GTVSDGRVHLVASVAPALVERGVKAGAIVKVA 846

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           A+V  GGGGGGR  MA++GG +  K  +AI
Sbjct: 847 AEVT-GGGGGGRDTMARAGGRDPEKLSEAI 875


>gi|322517303|ref|ZP_08070179.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124086|gb|EFX95636.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 872

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 331/911 (36%), Positives = 497/911 (54%), Gaps = 70/911 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293
            V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I DG LP 
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ ++ 
Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F +T+D G  +LD +L++L K     L G   FKLYDT+G P+++ +++    G  
Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELAEDEGFK 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F  A++EQ+ RARA  +  GS              G       ++   S+F+ E
Sbjct: 419 -IDHEGFKAAMKEQQERARASVVKGGS-------------MGMQNETLANITEPSEFLYE 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  IV      +   SGQ + +VF+QTPFYAE GGQ+ D 
Sbjct: 465 -------------AETAESHLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVADH 510

Query: 532 GCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G  I D    +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH+
Sbjct: 511 GT-ISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  P
Sbjct: 569 ATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKATP 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI + 
Sbjct: 629 VTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGMF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E+ 
Sbjct: 684 KIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQL 743

Query: 768 RKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
             LQ  +A  K +            + + N + +I S+V   D+  L++  D  ++   S
Sbjct: 744 HALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADYS 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++L     E K +VL+      +   N +   ++ A ++  G GGG+P MA +GG + 
Sbjct: 804 DVLVLAAHIGE-KVNVLVASKSKGVHAGNVI---KVLAPIV-SGRGGGKPDMAMAGGSDA 858

Query: 883 NKADQAIAGVA 893
           N     ++ VA
Sbjct: 859 NGIQDLLSAVA 869


>gi|228471913|ref|ZP_04056683.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276765|gb|EEK15471.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 877

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 343/921 (37%), Positives = 501/921 (54%), Gaps = 80/921 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP  + V   QK
Sbjct: 6   IRELFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGNAKPKQKRVVDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAITWAWELLTEVYKIPKENLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +TV++         D+EA+ +WK+   ++ D I+     DNFW M + GPCGPCSEI  D
Sbjct: 126 VTVFEGSPEEGVPFDQEAYDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 ---QGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               GE     G    + +  + IEIWN VFM+F ++       LP  ++DTGMG ER+ 
Sbjct: 184 IRSDGEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPAQNVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNI-VNHRVIVDHLRSSSFL 285
            VLQ K +NYD D+F  LI   E++T  +Y        E   I +  RVI DH+R+ SF 
Sbjct: 244 MVLQGKQSNYDTDVFTPLIHKVEEITKTRYTNGIQLTPEQEQINIAIRVISDHIRAVSFA 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG  +PEL +  
Sbjct: 304 IADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLTKQMGGTFPELEKEF 363

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           LLI   ++ E+  F +TL++GL++LD V+     D+ L+G  AF+LYDT+G P D+   I
Sbjct: 364 LLIVSVIKEEEASFLRTLEQGLLMLD-VMIQNASDKQLSGSKAFELYDTYGFPKDLTALI 422

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  RG+  +D  SF + L++Q+ R+RA +  + +G     W  L++     +FIGYD L 
Sbjct: 423 LSERGMT-LDEASFEEHLQKQKERSRA-AAQVKAGD----WVVLRDDE-EEEFIGYDTLE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + RKV  QK                            G   ++VF+ TPFY E 
Sbjct: 476 AMVRLVKYRKVESQK---------------------------DGTLYQLVFNTTPFYPEG 508

Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G     +G  + ITD  KK   + +H  I E             +    R   
Sbjct: 509 GGQVGDRGTLQAANGELIYITDT-KKENNLIIH--IAEHLPENLNDPFKAEVHPMGRALA 565

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   +T  EL  +E  VN  I
Sbjct: 566 QSNHSATHLLHQALREVLGTHVEQKGSHVSPEALRFDFSHFAKLTPEELTEVERLVNKRI 625

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            + +P+   R +  + A+ +GA AL G KY ++VR++          S  LCGGTHV +T
Sbjct: 626 YEKIPLEEHRNIPIQQALEAGAMALFGEKYGEKVRMIQFG------ESRELCGGTHVKNT 679

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    IVSE ++ AG+RRIEAIT   A  H + Q++ L+ +   LK  Q + +  +  
Sbjct: 680 GDIWFFKIVSEGAVAAGVRRIEAITNAGALKHFLLQEKLLEEIKGSLKNPQ-DPIKSITN 738

Query: 763 IWEE----YRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE    +++L+ +  ++  QL  E       I+ V  ++  + ++D   LK +   L 
Sbjct: 739 LQEENARLHKELEQLKREQAKQLKGELKGEFVTISGVQCLTKRL-DLDIATLKDLAFMLG 797

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++++   I+     ++ KA +L  + ++L      +A  + R   K +  GGGGG+P  A
Sbjct: 798 EEVKDAFILFGATQEDGKALLLCYINKELTQSKGLDAGKIVRELGKYI-QGGGGGQPFFA 856

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG       +A+  V + L
Sbjct: 857 TAGGRKPEGIAEALEKVKTLL 877


>gi|306836213|ref|ZP_07469197.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567934|gb|EFM43515.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 894

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 335/923 (36%), Positives = 504/923 (54%), Gaps = 68/923 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F  +GHE++PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQGLATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW+LLTK+     F 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVEDGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFMQ E+     K +  I   LPK +IDTG+G+ER+
Sbjct: 181 GSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFEIVGELPKKNIDTGLGIERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNIVNHRVIVDHLRSSSFLIAD 288
           A +LQ   N Y+ DL + +I  +E++TG  Y     + NNI   RV+ DH R+   LI D
Sbjct: 240 ACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQENNI-RFRVVADHSRTGMMLILD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  A+LLG   P M   +  +   M  +YPE+   +  I 
Sbjct: 299 GVTPGNEGRGYILRRLLRRIIRSAKLLGAEGPTMERFMNTVMDTMTPSYPEIADNRERIL 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDE-ILNGDVAFKLYDTHGLPLDIMQ 402
               +E++ F KTL+ G  L D  +     +H  K + +L+GD AF+L+DT+G P+D+  
Sbjct: 359 RVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPIDLTL 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F GY+ 
Sbjct: 419 EMAQEAGLD-VDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGYE- 476

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                               +L +G + I   +V+ G+ V E   G +VEV+ D +P YA
Sbjct: 477 --------------------ELVSGANVI--GLVKDGQKVNEVHEGDEVEVILDHSPLYA 514

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G        L++ DVQK  + ++VH A V  G L   MS+  ++D + R  
Sbjct: 515 ESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEKWRHG 574

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +++ I    N  
Sbjct: 575 ATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALITNQA 634

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I  N+ V T   + E+A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV S+
Sbjct: 635 IDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTHVGSS 690

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV    +  R+ +
Sbjct: 691 AEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPERISQ 750

Query: 763 IWEEYRKLQL-IHAKRKLQLNVEDLS-CHKIADVNFMSHIISEV----DSKELKSVMDAL 816
           + E  +  +  I   RK QL            +VN +  I  ++       +L++V   +
Sbjct: 751 LSERLKAAEKEIEVLRKAQLTARASEFIDSATEVNGIKTITLQLPDGTSGGDLRTVATDI 810

Query: 817 QKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + +++  + +I+L  + K K   +     + + +   A D+ +   + +  G GGG+P M
Sbjct: 811 RNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYV-NGRGGGKPDM 869

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ  G     A +    V   L+
Sbjct: 870 AQGSGTAPEGAQRGFEAVKDLLQ 892


>gi|259507362|ref|ZP_05750262.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|259165073|gb|EEW49627.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 906

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 335/921 (36%), Positives = 502/921 (54%), Gaps = 66/921 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 22  IRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTATSI 80

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       + 
Sbjct: 81  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEGGYG 136

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 137 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 196

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233
           G    G   G + +  RY+EIWNLVFM+FE  +   ++ F     LPK +IDTGMG+ER+
Sbjct: 197 GPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGVERV 255

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI DG+ 
Sbjct: 256 ACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILDGVT 315

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  I    
Sbjct: 316 PGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERILRVA 375

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++    G
Sbjct: 376 ITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAAEAG 435

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L      
Sbjct: 436 LE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELESQ--- 491

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GGQLG
Sbjct: 492 --------------------SRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGGQLG 531

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G   +GD + + I DVQK  + ++VH A+V  G L     +V  +D Q R      H+
Sbjct: 532 DRGRILMGDTV-VDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQAHT 590

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ +  +  
Sbjct: 591 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTDWA 650

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I  +
Sbjct: 651 VNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIGPV 706

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767
            ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ ++  
Sbjct: 707 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDKLK 766

Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQ 821
              +++  +H +R+L    E+      +I  +   M  +   +D+ +L+++   L+ K+ 
Sbjct: 767 AAEKEIATLH-RRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKLS 825

Query: 822 SGIIMLVGISKEKKASVLIVV---TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +G  ++V  S+ +  + +  V   T+  + R  ++ +L +L    +  G GGG+P MAQ 
Sbjct: 826 NGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQG 884

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G + +  D A   V + L+ 
Sbjct: 885 SGSDIDGLDAAFNAVRAELEN 905


>gi|25028304|ref|NP_738358.1| alanyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23493588|dbj|BAC18558.1| putative alanyl-tRNA synthetase [Corynebacterium efficiens YS-314]
          Length = 926

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 335/921 (36%), Positives = 502/921 (54%), Gaps = 66/921 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 42  IRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTATSI 100

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       + 
Sbjct: 101 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEGGYG 156

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 157 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 216

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233
           G    G   G + +  RY+EIWNLVFM+FE  +   ++ F     LPK +IDTGMG+ER+
Sbjct: 217 GPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGVERV 275

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI DG+ 
Sbjct: 276 ACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILDGVT 335

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  I    
Sbjct: 336 PGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERILRVA 395

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++    G
Sbjct: 396 ITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAAEAG 455

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L      
Sbjct: 456 LE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELESQ--- 511

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GGQLG
Sbjct: 512 --------------------SRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGGQLG 551

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G   +GD + + I DVQK  + ++VH A+V  G L     +V  +D Q R      H+
Sbjct: 552 DRGRILMGDTV-VDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQAHT 610

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ +  +  
Sbjct: 611 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTDWA 670

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I  +
Sbjct: 671 VNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIGPV 726

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767
            ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ ++  
Sbjct: 727 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDKLK 786

Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQ 821
              +++  +H +R+L    E+      +I  +   M  +   +D+ +L+++   L+ K+ 
Sbjct: 787 AAEKEIATLH-RRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKLS 845

Query: 822 SGIIMLVGISKEKKASVLIVV---TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +G  ++V  S+ +  + +  V   T+  + R  ++ +L +L    +  G GGG+P MAQ 
Sbjct: 846 NGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQG 904

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G + +  D A   V + L+ 
Sbjct: 905 SGSDIDGLDAAFNAVRAELEN 925


>gi|296394106|ref|YP_003658990.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181253|gb|ADG98159.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 892

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 339/909 (37%), Positives = 486/909 (53%), Gaps = 70/909 (7%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL  F KNGHEL PS+SLI  +DP L+F N+GMV F   F GQ  P    +T++QKCVR 
Sbjct: 10  FLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRLTSIQKCVRT 68

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125
                D++ VG T RH+TFF+M GNFSFG YFKERAIQLAW LLT       +  D  RL
Sbjct: 69  ----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKERAIQLAWTLLTSSVADGGYGFDPERL 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           + TVY++D+EA  LWKK++GL  +++ R    DN+WSM   GP GPCSEI++D+G E   
Sbjct: 125 WATVYEDDDEAITLWKKVAGLPDERVQRRGPADNYWSMGIPGPSGPCSEIYYDRGPEYGA 184

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERMATVLQ 238
            G P + E+  RY+EIWNLVFMQ E    ++K +  I   LPK +IDTGMG+ER+A +LQ
Sbjct: 185 DGGPEADED--RYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGVERVAFLLQ 242

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANE 295
              N Y+ D+ + +I  +EQ+TG +Y   +  +    RVI DH R++  LIADG+ P N+
Sbjct: 243 GVDNVYETDVVRPVISVAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIADGVNPGND 302

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +  ARLLG TE     L+  + + M   YPEL      IE T   E+
Sbjct: 303 GRGYVLRRLLRRIVRAARLLGATELATPALVAQVVSSMSPMYPELSHEAARIERTAAGEE 362

Query: 356 ERFGKTLDRGLVLLDGVLS-HLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F  T+D G  L + V +  LG   +I+ G  AF L+DT+G PL++  ++    GL  +
Sbjct: 363 HAFRNTIDSGSKLFEQVAAGALGSSRKIIPGTEAFALHDTYGFPLELTLEMAREVGLE-V 421

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F Q + EQR RA+A +        ++  +        T+F G+D L  S F     
Sbjct: 422 DQEGFAQLMAEQRRRAKADAKSRKQAHEDQSAYQALLDGPPTEFTGFDEL--SSF----- 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             +  +V  G++  E  +GQ+ +++ D+TP YAE+GGQL DTG 
Sbjct: 475 ----------------GTILGVVVDGQLANEVRAGQEAQIILDRTPLYAESGGQLADTGS 518

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G   +++DVQK A+ +F H   V  G   T   +   +D + R   +  HS THL+
Sbjct: 519 ISAPGAFAEVSDVQKIAKRLFAHRVKVVEGAFATGQEVTAQVDSKWRHGANQGHSGTHLV 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG   +Q GS   P  LRFD      ++    + IE  V + +  + PV T +
Sbjct: 579 HAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPQAKQEIESVVGEAVETDYPVNTFV 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + + A A GA AL G  Y +RVRVV +    GG  S  LCGGTHV S+ ++  + ++ E
Sbjct: 639 TDIDRARAMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVPSSAKVGPVVLLGE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
           SS  +G RR+EA+ G  AR HL  +   L ++AS +         +V  + E  + L+  
Sbjct: 695 SSTGSGTRRVEALVGYDAREHLAKERALLAAVASAVGAPAPEAPDKVRALVERVKTLERE 754

Query: 772 --------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI--Q 821
                          L  +   +     A V F+S   +EVDS +L+ +  ++++    +
Sbjct: 755 IARQAQAQARAQAGNLAQSASPVRLCSGAVVEFVS---AEVDSDDLRGLAASMKEAFGSR 811

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-- 879
           + +  L   S EK A  ++           A +L R  A  +  G GGG+  +AQ  G  
Sbjct: 812 AAVAALFHKSGEKVAFAVLATKAANELGAKAGELLRAVAPAV-NGRGGGKDDLAQGSGTD 870

Query: 880 PNGNKADQA 888
           P+   A QA
Sbjct: 871 PSAVPAAQA 879


>gi|329116323|ref|ZP_08245040.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906728|gb|EGE53642.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 872

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 336/915 (36%), Positives = 500/915 (54%), Gaps = 72/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AEIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y  D +++  W  + G+    +I +   +NFW +   GP GP +EIFFD+GE 
Sbjct: 123 EKLYMTYYPADTDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGES 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF    +  + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N++ DLF  +I+  E ++G  Y+  G+N+ + +VI DH+R+ SF I DG LP
Sbjct: 239 AVMQGAKTNFETDLFMPIIREVETLSGKTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRR++RRA+ + R LG  +  +  L+  +   M S YPE+++ K  IE+ ++
Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINQTFLYKLVMVVGQIMESYYPEILEKKDFIEKIVK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ +++    G
Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDI-FKLYDTYGFPVELTEEMAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS              G       ++   S+F 
Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGS-------------MGMQNETLANITELSEFN 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            +  K+  Q   I + N  S              EAVS  +  +VFDQTPFYAE GGQ+ 
Sbjct: 463 YDREKLEGQLSVIVVDNERS--------------EAVSEGQALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + D   +   + DVQK   G  +H   V    L      +L +D++ R  +  NH
Sbjct: 509 DHGVILNDNGEVIANVIDVQKAPNGQALHTVEV-LANLSVGTKYMLKVDHKRRFAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H +Q GS    + LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 568 TATHLLHAALHNIIGKHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIWNAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + E A + GA AL G KY   VRVV +     G +S  LCGGTHVS+T EI L
Sbjct: 628 KVQTIESDVETAKSMGAMALFGEKYGKLVRVVVI-----GDYSVELCGGTHVSNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T ++A      +++ LK +AS +K  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKQAFEAYRKEEDALKEIASTIKAPQIEQVPTKVASLNEQ 742

Query: 767 YRKLQL-IHAKRKLQLNVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +   ++     +     K + +VN  ++I ++V   D+  L++  D  ++K  
Sbjct: 743 VRELQKEVAELKEKAAAAQAGDVFKDVKEVNGHTYIATQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S I++LV    E K +VL+      L   N +   +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDILILVAAIGE-KVNVLVASKSKELHAGNVI---KALAPIV-SGRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K +  +  V + L
Sbjct: 858 ASKINDLLNEVPNQL 872


>gi|312864171|ref|ZP_07724405.1| alanine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100172|gb|EFQ58381.1| alanine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 872

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 331/911 (36%), Positives = 496/911 (54%), Gaps = 70/911 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD  +
Sbjct: 67  QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDFPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+GE 
Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234
                 G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER+ 
Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293
            V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I DG LP 
Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGALPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ ++ 
Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F +T+D G  +LD +L++L K     L G   FKLYDT+G P+++ +++    G  
Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELAEDEGFK 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F  A++EQ+ RARA  +  GS              G       ++   S+F+ E
Sbjct: 419 -IDHEGFKAAMKEQQERARASVVKGGS-------------MGMQNETLANITEPSEFLYE 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  IV      +   SGQ + +VF+QTPFYAE GGQ+ D 
Sbjct: 465 -------------AETAESHLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVADH 510

Query: 532 GCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G  I D    +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH+
Sbjct: 511 GT-ISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  P
Sbjct: 569 ATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKATP 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI + 
Sbjct: 629 VTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGMF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E+ 
Sbjct: 684 KIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQL 743

Query: 768 RKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
             LQ  +A  K +            + + N + +I S+V   D+  L++  D  ++   S
Sbjct: 744 HALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADYS 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++L     E K +VL+      +   N +   ++ A ++  G GGG+P MA +GG + 
Sbjct: 804 DVLVLAAHIGE-KVNVLVASKSKGVHAGNVI---KVLAPIV-SGRGGGKPDMAMAGGSDA 858

Query: 883 NKADQAIAGVA 893
           N     +  VA
Sbjct: 859 NGIQDLLLAVA 869


>gi|41018232|sp|Q8FT23|SYA_COREF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 890

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 335/921 (36%), Positives = 502/921 (54%), Gaps = 66/921 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       + 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEGGYG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233
           G    G   G + +  RY+EIWNLVFM+FE  +   ++ F     LPK +IDTGMG+ER+
Sbjct: 181 GPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGVERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI DG+ 
Sbjct: 240 ACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILDGVT 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  I    
Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERILRVA 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++    G
Sbjct: 360 ITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAAEAG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L      
Sbjct: 420 LE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELESQ--- 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GGQLG
Sbjct: 476 --------------------SRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGGQLG 515

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G   +GD + + I DVQK  + ++VH A+V  G L     +V  +D Q R      H+
Sbjct: 516 DRGRILMGDTV-VDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQAHT 574

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ +  +  
Sbjct: 575 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTDWA 634

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I  +
Sbjct: 635 VNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIGPV 690

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767
            ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ ++  
Sbjct: 691 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDKLK 750

Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQ 821
              +++  +H +R+L    E+      +I  +   M  +   +D+ +L+++   L+ K+ 
Sbjct: 751 AAEKEIATLH-RRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKLS 809

Query: 822 SGIIMLVGISKEKKASVLIVV---TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +G  ++V  S+ +  + +  V   T+  + R  ++ +L +L    +  G GGG+P MAQ 
Sbjct: 810 NGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQG 868

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G + +  D A   V + L+ 
Sbjct: 869 SGSDIDGLDAAFNAVRAELEN 889


>gi|295396122|ref|ZP_06806305.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971063|gb|EFG46955.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 884

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 332/910 (36%), Positives = 495/910 (54%), Gaps = 56/910 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I+  +LEFF+  GH ++PS+S+I  +DP+++F  +GMV F    TG+E   +   T+
Sbjct: 3   TAEIKRRWLEFFESKGHTVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           VQKCVR      D++ VG+T RH TFF+M GNFSFG YFK  AI +AW+LLT   D    
Sbjct: 62  VQKCVRTA----DIEEVGQTTRHGTFFQMNGNFSFGDYFKREAISMAWELLTTLEDKGGL 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D   L++TV+ +D  +  LW + + +  ++I      DNFW   + GP G CSEI+FD
Sbjct: 118 GFDPNLLWVTVHQDDAASIDLWLEETSMPRERIQMRGNEDNFWHTGQPGPGGYCSEIYFD 177

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLER 232
           +G    G   G   + +RYIEIWNLVFM+FE    + +        LP  +IDTGMGLER
Sbjct: 178 RGPAY-GKEGGPVADEDRYIEIWNLVFMEFELSEVRTKVDFDIKGDLPAKNIDTGMGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           +A + Q   N Y+ID    +I+ +E+++G  Y  N  + V  RV+ DH+RS+  +I DG+
Sbjct: 237 VAFLKQGVENMYEIDEVYPVIKKAEELSGRAYGTNHDDDVRMRVVADHVRSALVIIGDGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P NEGRGY+LRR++RR++   RLLG T+P++ HLLP     M  +YPEL      I + 
Sbjct: 297 RPGNEGRGYILRRLLRRSIRAMRLLGVTQPVLPHLLPVSKDAMKQSYPELDTDFDRISKI 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
             +E+  F +TL+ G  LL   ++ +GK   ++G VAF L+DTHG P+D+  ++    G+
Sbjct: 357 AYAEETAFLRTLESGTQLLTRTVAEVGKGGTIDGAVAFTLHDTHGFPIDLTVEMAHEAGV 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F   +EEQR RA+A +     G      +S   + G ++F+GYD L       
Sbjct: 417 E-VDVDGFKAHMEEQRQRAKADAKSKKGGGANLTAYSHLLEAGTSEFVGYDNLN------ 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V+ I++ GE V  A +G  V+VV D TPFYAE+GGQ  D
Sbjct: 470 -----------------TLATVRGIIKDGEAVPVAHAGDTVDVVLDITPFYAESGGQTAD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G  ++ ++TDVQ    G+  H   VE G L T   +   +D  +R Q    HSAT
Sbjct: 513 IGHLTGPDLKARVTDVQNILAGLPTHKVTVETGELETGALITAQVDPDHRYQAQQAHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LGS+ +Q GS   P  LRFD ++ + ++ A  + IE+  N  +  N  V 
Sbjct: 573 HLIHAALREVLGSNATQAGSLNNPGYLRFDYSYPEALSPAARQEIEECANTAVRDNFEVG 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              +  E+A  SGA AL G +Y + VRVV +     G  S  LCGGTHV+ T EI  + +
Sbjct: 633 YDFLPFEEAKKSGAMALFGERYPEIVRVVDIN----GTWSRELCGGTHVTRTAEIGPISL 688

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEE 766
            SE+S+ +G RRIEA  G  A   L  +   +  L+  LKV    V  RV    + I E 
Sbjct: 689 TSEASVGSGTRRIEASVGLDAMKQLARERSTVAQLSELLKVPGPEVYERVTGLMDRIKEA 748

Query: 767 YRKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQ--S 822
            R +  ++ ++ L +      S  K+     ++  + +V ++ +++S +  ++ ++   +
Sbjct: 749 ERTIAHLNQEKVLARATDAAASAQKLGPATVVTTELGDVANAADVRSFVLDVRNRLNDPA 808

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +I  VG++  K A V+ V  E       A  L   + K L GGGGGG+P +AQ GG + 
Sbjct: 809 HVIAAVGLANGKPAVVIAVGPEAQKAGLKAGALVTSACKTL-GGGGGGKPDLAQGGGQDA 867

Query: 883 NKADQAIAGV 892
            K  QA   V
Sbjct: 868 TKVSQAFQDV 877


>gi|78214024|ref|YP_382803.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|123577380|sp|Q3AGN4|SYA_SYNSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78198483|gb|ABB36248.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 889

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 334/891 (37%), Positives = 498/891 (55%), Gaps = 57/891 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL F+ + GH+ + S+SLIP +DPT++ T +GM+PFK +F GQ E+P  +A T+ Q
Sbjct: 20  IREAFLNFYAERGHKRMASASLIP-DDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TSSQ 77

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+RAI+ AW+L T  + +D + L
Sbjct: 78  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQRAIEWAWELSTGVYGIDPKNL 133

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + G
Sbjct: 134 VVSVFREDDEAELIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-G 192

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY+
Sbjct: 193 DEDIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPNNYE 252

Query: 246 IDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   LIQA+  + G+ Y   N     + +VI DH R+ + LI DG+  +N GRGY+LR
Sbjct: 253 TDLIFPLIQAAADLAGVDYHQLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYILR 312

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF +TL
Sbjct: 313 RLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFLETL 372

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  VL+   K   ++G  AF+LYDT+G PL++ Q+I   +GLA +D+  F  A+
Sbjct: 373 ERGEKLLAEVLAS--KPTQISGAQAFELYDTYGFPLELTQEIAEEQGLA-VDLDGFEAAM 429

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RA+A ++ +     + I   + ++  AT F GY+ L                   
Sbjct: 430 EEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFEGYEALDH----------------- 471

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 +S V+A+V  G     A +G  V+VV D TPFY E GGQ+GD G   G  + ++
Sbjct: 472 ------ASCVQALVVNGGPSTTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLAGSDLIVR 525

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I  V +  + +FVH   VERG L    ++   +D   RR+   NH+ATHLL  AL  ++ 
Sbjct: 526 IESVSRSRD-VFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQVVD 584

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             + Q GS +  D LRFD      +T  +L+ +E  +N  I +   +  + M  + A A+
Sbjct: 585 PGIGQAGSLVDFDRLRFDFHCPTAVTPDQLQQVETLINGWINEAHALQVQEMAIDQAKAA 644

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+ES + AGIRR
Sbjct: 645 GAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVTNTAEIGLFKIVAESGVAAGIRR 699

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKR 777
           IEA+ G    ++L  +D  +K L    K     +V RV  + EE +              
Sbjct: 700 IEAVAGPAVLAYLNERDVVVKQLGDRFKAQPAEIVDRVAALQEELKATGKALAAAQAELA 759

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             +          + D   +   +  VD   L+    +L  ++  G  +++G   +    
Sbjct: 760 VAKAGALAAKAEAVGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDPGDM 819

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGG------GGGGGRPHMAQSGGPNG 882
             +++      +  A  L   + K +GG      GGGGGRP++AQ+GG +G
Sbjct: 820 GKVILVAAFGQQVIAAKLQ--AGKFIGGIAKQCGGGGGGRPNLAQAGGRDG 868


>gi|221632736|ref|YP_002521957.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155742|gb|ACM04869.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 878

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 329/908 (36%), Positives = 502/908 (55%), Gaps = 68/908 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  F+EFF + GH  +PSSSLIP +DPT++ T +GM      F G E+P +  +T++
Sbjct: 4   SEIRRAFIEFFAERGHVQVPSSSLIP-SDPTVLLTTAGMQQMVPYFLGLERPPHTRLTSI 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC R      D+D VG  + H TFFEMLGNFS G YFK  AI  AW+ LTK   +   R
Sbjct: 63  QKCFRT----VDIDEVGDES-HLTFFEMLGNFSIGDYFKAEAISWAWEFLTKWLGVPAER 117

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG--- 180
            Y TV+ +DE +++ W+   G+  ++I ++   DN+W  +  TGP GP SEI +D+G   
Sbjct: 118 WYPTVHPDDEFSYQYWRDQIGVPTERIFKL--EDNWWGPVGATGPNGPDSEIHYDRGMEY 175

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                EC PG   G      R++E WNLVFM+F ++    +  LP+ +IDTGMGLER++ 
Sbjct: 176 GCGRTECGPGCDCG------RFLETWNLVFMEFYKEADGTQRPLPRKNIDTGMGLERISL 229

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293
           ++Q   + ++ DLF  ++  +  + G++Y+    V+   RVI DH R  +FL+ DG+ P+
Sbjct: 230 IMQGVGSVFETDLFYPILSEAATIAGVRYKEQARVDRSLRVIADHARGVTFLVGDGVFPS 289

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ + +LLG   P +  L+  +     S YP L + +  I   +R 
Sbjct: 290 NEGRGYVLRRVLRRAVRHGKLLGIERPFLNQLVDVVIELFSSYYPNLNEQRERIHRVIRH 349

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F +TL  GL   + +L  L +  +++L GD AF+LYDT+G PL++ +++    G  
Sbjct: 350 EEEHFQRTLSAGLSRFEALLDQLQRSGEQVLPGDEAFRLYDTYGFPLELTEELARESGFT 409

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKF 468
            +D   F +ALE QR  +RA S+G  + T  +   ++    E+   T+F+GYD L     
Sbjct: 410 -VDRAGFERALERQRELSRA-SVGRFADTQRQRAELYAQFSER--PTEFVGYDRLE---- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               ++ +  I+   ++ +EA +G+++E++ D+TPFY EAGGQ+
Sbjct: 462 -------------------TTATIVGILGLSDLRQEAEAGEEIELILDRTPFYGEAGGQV 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG  + +   + + D Q+    + VH   V  G +R   S+   +D + R  +  NH+
Sbjct: 503 GDTGEIVAETGIVTVEDTQRPTPELIVHRGRVREGSIRVGQSVRAIVDAERRAAIRRNHT 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H  Q GS + PD LRFD +H + ++  +L+ IE+ VN+ I ++L 
Sbjct: 563 ATHLLHAALRRVLGEHAVQAGSLVAPDRLRFDFSHHESVSPEQLRRIEEMVNEQIVRDLR 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  R +   DA+A GA AL G KY D VRVVS+   DG   S  LCGGTHVS TGEI   
Sbjct: 623 VEVRYLPLRDALAEGAIALFGEKYGDTVRVVSI---DG--FSKELCGGTHVSHTGEIGAF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I  E+S+ +GIRRIEA+TG  A        +  +  A  L V    +   +E + ++ R
Sbjct: 678 LITDETSVASGIRRIEAVTGLAAARLARTLIDVSEEAARRLHVVPEQLPEAIERLQQQVR 737

Query: 769 KLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823
             Q  +      L          + A ++    + + ++      L+ V D L+  I SG
Sbjct: 738 DQQREIERLAADLAAARLAPLVERAARIDGFRVVSARIEVPSLDVLRRVGDRLRDAIGSG 797

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L G + E +  +L + T D + R         +   L GG GGGRP +AQ GG + +
Sbjct: 798 VVIL-GTAIENRPMILAMATPDAVQRGVHAGQVVQAVTPLLGGRGGGRPDIAQGGGADVS 856

Query: 884 KADQAIAG 891
           + D+A+A 
Sbjct: 857 RLDEALAA 864


>gi|227833217|ref|YP_002834924.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184203|ref|ZP_06043624.1| alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454233|gb|ACP32986.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 895

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 331/907 (36%), Positives = 493/907 (54%), Gaps = 67/907 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F + F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTQHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFANGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   +     
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTNSVEDGGLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA  +W    G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAADIWHDKIGVPRERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G  E+ +RY+EIWNLVFMQ E      + N +    LPK +IDTGMG+ER+
Sbjct: 181 GPEY-GQDGGPVEDDDRYMEIWNLVFMQNERGEGIGKGNFEIIGELPKKNIDTGMGIERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADG 289
           A +LQ   N Y+ DL + +I  +E++TG KY       +++  RV+ DH R+   LI DG
Sbjct: 240 ACILQGVDNVYETDLLRPVIDVAEELTGAKYVPDAPKEDLIRFRVVADHSRTGMMLILDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+ + +  I  
Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSAKLLGAKGETMERFMNTIMDTMTPSYPEIAENRERILR 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLPLDIMQD 403
              +E++ F KTL+ G  L D  ++ L         ++L+G+ AF+L+DT+G P+D+  +
Sbjct: 360 VALAEEKAFLKTLESGTKLFDEAVTELKNTSRAATPKVLSGEKAFELHDTYGFPIDLTLE 419

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+  F+ A+ EQR RA+A +     G  +   +        T F GY+ L
Sbjct: 420 MAQEAGLT-VDMEGFDAAMGEQRRRAKADNQAKKHGHADLSLYREWVDNHPTLFTGYETL 478

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 + + KVL                  +V+ GE V E  +G  VEV+ DQ+P YAE
Sbjct: 479 ------ESEAKVL-----------------GLVRDGEKVSEVQAGDTVEVILDQSPLYAE 515

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  D G  I     L++ DVQK  + ++VH A V  G L     +   +D Q R   
Sbjct: 516 AGGQTADRGRIIAGETLLEVNDVQKIGKKLWVHKATVTAGGLELGNGVTAAVDEQWRHGA 575

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HSATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I    N  +
Sbjct: 576 VQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTDQLTQEQLDEIALVTNQAV 635

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q+ PV T   + + A   GA AL G  Y   VRVV    E GG  S  LCGGTHV +T 
Sbjct: 636 DQHFPVNTIETSLDKAKEMGAMALFGENYGSEVRVV----EMGGPFSIELCGGTHVKNTA 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  R+ ++
Sbjct: 692 EIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERIAQL 751

Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHK-IADVNFMS-HIISEVDSKELKSVMDALQ 817
            E+     +++  +H  + +    E +S  K I D   ++  +   V+  +L+++   ++
Sbjct: 752 TEKLKAAEKQIAELHKAQLMSQTAEMISTAKTINDFTLVAVKLPKGVNGGDLRTLASDIK 811

Query: 818 KKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
            ++   + +++L   ++  K   ++  T+   +R   A DL +L +  +  G GGG+P M
Sbjct: 812 NRLGDVAAVVVLASENEGGKMPFIVGATKAANERGVKAGDLVKLVSGYV-DGKGGGKPDM 870

Query: 875 AQSGGPN 881
           AQ  G N
Sbjct: 871 AQGSGVN 877


>gi|313471497|sp|B8B4H5|SYAP_ORYSI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags:
           Precursor
 gi|218197887|gb|EEC80314.1| hypothetical protein OsI_22356 [Oryza sativa Indica Group]
          Length = 996

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 336/918 (36%), Positives = 510/918 (55%), Gaps = 94/918 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       TT Q
Sbjct: 103 AIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCATTSQ 161

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI  AW+L TKEF L   RL
Sbjct: 162 KCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPPERL 217

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +I+V+ +D+EAF +W    G+  ++I R+  +DNFW+   TGPCGPCSEI++D     P 
Sbjct: 218 WISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYD---FYPE 274

Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                ++ G+  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  NN
Sbjct: 275 RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNN 334

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGYV
Sbjct: 335 YETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGYV 394

Query: 301 LRRIMRRAMCYARLLGYTE-----------PLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +RR++RR +   RL+G              P +  +  +L TE+    P++   +  I  
Sbjct: 395 VRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEID---PDVESRRKSILG 451

Query: 350 TLRSEDERFGKTLDRG-------LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E+ RF +TL+RG       L        + G    L+G   F LYDT+G P++I  
Sbjct: 452 ELQREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITA 511

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
           +I   RG+  +D+  F+  +E QR +++A  + + L  G   +I  S+ +    T+F+GY
Sbjct: 512 EIAGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNETEIVKSIPD----TEFLGY 566

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L                         +++VK ++  G  V     G  VE+  D+TPF
Sbjct: 567 DSL-----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPF 603

Query: 521 YAEAGGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           YAE+GGQ+GD G     G         ++I DVQK    IFVH   +++G +     +  
Sbjct: 604 YAESGGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDA 663

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D + R+    +H+ATHLL  AL +I+GS  SQ GS +  D LRFD    +P++  EL 
Sbjct: 664 AVDAKLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELM 723

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN  ++    + T++M+ +DA  +GA A+ G KY ++VRVV V     GV S  L
Sbjct: 724 KIESLVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVP----GV-SMEL 778

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHVS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV  
Sbjct: 779 CGGTHVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKA 838

Query: 754 GNVVGRVEEIWEEYR--KLQLIHAKRKLQ-LNVEDLS--CHKIADVNFMSHIISEVDSKE 808
            +V GRVE I EE R  + ++   + K+  L    L+     I +   +   + +VD+  
Sbjct: 839 EDVNGRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADG 898

Query: 809 LKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-- 865
           LKS  + L   ++    +++G S  + K S++   +  +      V +   + K +GG  
Sbjct: 899 LKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGV------VKMGIQAGKFVGGIA 952

Query: 866 ----GGGGGRPHMAQSGG 879
               GGGGG+P+ AQ+GG
Sbjct: 953 KLCGGGGGGKPNFAQAGG 970


>gi|317507135|ref|ZP_07964895.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974]
 gi|316254581|gb|EFV13891.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974]
          Length = 830

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 320/829 (38%), Positives = 457/829 (55%), Gaps = 60/829 (7%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL  F KNGHEL PS+SLI  +DP L+F N+GMV F   F GQ  P    +T+VQKCVR 
Sbjct: 10  FLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRMTSVQKCVRT 68

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125
                D++ VG T RH+TFF+M GNFSFG YFKE AIQ AW LLT       +  D  RL
Sbjct: 69  ----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAIQFAWSLLTSSVEDGGYGFDPNRL 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           + TVY++D+EA +LWKK++GL  ++I R    DN+WSM   GP GPCSEI+FD+G    G
Sbjct: 125 WATVYEDDDEAIELWKKVAGLPDERIQRRGPADNYWSMGIPGPSGPCSEIYFDRGPEF-G 183

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERMATVLQE 239
              G   + +RY+EIWNLVFMQ E    ++K +  I   LPK +IDTGMG+ER+A +LQ 
Sbjct: 184 ADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGVERVAFLLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEG 296
             N Y+ D+ + +I  +EQ+TG +Y   +  +    RVI DH R++  LI DG+ P N+G
Sbjct: 244 VDNVYETDVVRPVIDCAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIGDGVNPGNDG 303

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RR +  ARLLG TE +   L+  +   M   YPEL++    IE     E+ 
Sbjct: 304 RGYVLRRLLRRIVRSARLLGATEMVTPALVREVVAAMSPMYPELLREAPRIERIAAGEET 363

Query: 357 RFGKTLDRGLVLLD----GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            F  T+D G  L +    GV S  GK  ++ G  AF L+DT+G PL++  ++    GL  
Sbjct: 364 AFRNTIDSGSKLFEQVAEGVRSSSGK--VIPGAEAFALHDTYGFPLELTLEMAQEVGLQ- 420

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFMK 470
           +D   F + + EQR+RA+A +        ++  +       AT+F GYD L  RGS    
Sbjct: 421 VDQEGFARLMAEQRNRAKADAKARKQAHADQSVYHELLDGPATEFTGYDELSSRGS---- 476

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                +  IV  G++  E  +GQ+ +++ D+TP YAE+GGQL D
Sbjct: 477 ---------------------ILGIVVDGQLANEVHAGQEAQIILDRTPLYAESGGQLAD 515

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG     G    +TDVQ+ A+ +F H   V  G       +   +D + R   +  HS T
Sbjct: 516 TGSISAPGAHADVTDVQRIAKRLFTHRVKVTEGAFAVGAEVTAQVDSKWRHGANQGHSGT 575

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG   +Q GS   P  LRFD      ++    + IE  V + +  + PV 
Sbjct: 576 HLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPETRQDIESVVAEAVETDYPVN 635

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + + A + GA AL G  Y +RVRVV +    GG  S  LCGGTHV+S+G+I  + +
Sbjct: 636 TFVTDIDRARSMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVASSGKIGPVVL 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + ESS  +G RR+EA+ G  AR HL  +   L ++AS +         +V  + E  + L
Sbjct: 692 LGESSTGSGTRRVEALVGYDAREHLAKERTLLAAVASAVGSPAAEAPDKVRALVERVKTL 751

Query: 771 QL-IHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQ 817
           +  I  + + Q   + +     A  V  +  + +EVDS +L+ +  +L+
Sbjct: 752 EREIARQAQAQARAQAVGLAATAVPVGAVEFVGAEVDSDDLRGLATSLK 800


>gi|254366760|ref|ZP_04982803.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134152271|gb|EBA44316.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 904

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 343/920 (37%), Positives = 504/920 (54%), Gaps = 62/920 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFGG F+ R I+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGGLFQTRVIELAWALLTNSLAAGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234
           E  P G P  SE+  RY+E+WNLVFMQ E      +++ Q    LP+ +IDTGMG+ER+A
Sbjct: 181 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291
            VLQ+  N Y+ DL + +I    +V    Y+ GN  + V +R+I DH R+++ LI DG+ 
Sbjct: 239 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR S+  
Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 476

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                V  ++ P+ + +GV+               A  GQ+VE+V D+TP YAE+GGQ+ 
Sbjct: 477 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 522

Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D   RR  + 
Sbjct: 523 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +  
Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 642

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     + A A GA AL G  Y D VRVV    E GG  S  LCGGTHVS+T +I
Sbjct: 643 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 698

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 758

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + ++               +I +V  ++  +S  + + +L+S++  ++ K
Sbjct: 759 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 818

Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + S   ++  I++ +  +V   V      +DL  R N  DL +  A  +  G GGG+  +
Sbjct: 819 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADL 875

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           AQ  G N    D A+  V S
Sbjct: 876 AQGSGKNPTGIDAALDAVRS 895


>gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 954

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 341/921 (37%), Positives = 509/921 (55%), Gaps = 97/921 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           SIR  FLEFF   GH++LPSSSL+P  DPT++ T +GM+ FK IF G+        TT Q
Sbjct: 58  SIRRRFLEFFASRGHKVLPSSSLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCATTAQ 116

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           +C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L   R+
Sbjct: 117 RCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPANRV 172

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++++Y++D+EAF++WK   G+S ++I R+   DNFW+   TGPCGPCSE+++D     P 
Sbjct: 173 WVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYD---FYPE 229

Query: 186 -GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKM---SIDTGMGLERMATVLQE 239
            G     + G+  R+IE +NLVFMQ+   NK E  +L  +   +IDTG+GLER+A +LQ+
Sbjct: 230 RGYDEDVDLGDDTRFIEFYNLVFMQY---NKTEDGLLEPLKQKNIDTGLGLERIAQILQK 286

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
             NNY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N G
Sbjct: 287 VPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIG 346

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL---------IQAKLLI 347
           RGYV+RR++RRA+   + LG    +  +L  A    +     EL         ++A  +I
Sbjct: 347 RGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRII 406

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL------GKD-EILNGDVAFKLYDTHGLPLDI 400
           EE +R E+  F KTL+RG  LLD  L+         KD   L+G  AF LYDT G P++I
Sbjct: 407 EE-IRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEI 465

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
             ++   RG++ ID+  F   +E QR +++ AH++      T +    + +    T+F+G
Sbjct: 466 TAEVAEERGVS-IDMNGFEVEMENQRRQSQAAHNV---VKLTVEDDADMTKNIADTEFLG 521

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L                          ++VK+++  G+ V     G +VEV+ D+TP
Sbjct: 522 YDSL-----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTP 558

Query: 520 FYAEAGGQLGDTG--CAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE+GGQ+ D G      DG +    ++++DVQK  + IFVH   V+ G L     +  
Sbjct: 559 FYAESGGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEA 617

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   EL+
Sbjct: 618 AVDADLRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELE 677

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA 692
            IE  +N  I     + T+++   DA  +GA A+ G KY++  VRVV V     GV S  
Sbjct: 678 EIECLINRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVP----GV-SME 732

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV 
Sbjct: 733 LCGGTHVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVK 792

Query: 753 QGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI------ISEV 804
             +V  RVE + EE R  + +    + K  +    +  +K   V     I      + + 
Sbjct: 793 AEDVTNRVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDT 852

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           D+  LKS  + L   ++  + +++G S EK    L+            V L   + K +G
Sbjct: 853 DADSLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSP-----GVVSLGVQAGKFIG 907

Query: 865 ------GGGGGGRPHMAQSGG 879
                 GGGGGG+P+ AQ+GG
Sbjct: 908 PIAKLCGGGGGGKPNFAQAGG 928


>gi|313471498|sp|B9FSH5|SYAP_ORYSJ RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|222635304|gb|EEE65436.1| hypothetical protein OsJ_20798 [Oryza sativa Japonica Group]
          Length = 932

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 336/918 (36%), Positives = 510/918 (55%), Gaps = 94/918 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       TT Q
Sbjct: 39  AIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCATTSQ 97

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI  AW+L TKEF L   RL
Sbjct: 98  KCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPPERL 153

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +I+V+ +D+EAF +W    G+  ++I R+  +DNFW+   TGPCGPCSEI++D     P 
Sbjct: 154 WISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYD---FYPE 210

Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                ++ G+  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  NN
Sbjct: 211 RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNN 270

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGYV
Sbjct: 271 YETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGYV 330

Query: 301 LRRIMRRAMCYARLLGYTE-----------PLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +RR++RR +   RL+G              P +  +  +L TE+    P++   +  I  
Sbjct: 331 VRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEID---PDVESRRKSILG 387

Query: 350 TLRSEDERFGKTLDRG-------LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E+ RF +TL+RG       L        + G    L+G   F LYDT+G P++I  
Sbjct: 388 ELQREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITA 447

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
           +I   RG+  +D+  F+  +E QR +++A  + + L  G   +I  S+ +    T+F+GY
Sbjct: 448 EISGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNETEIVKSIPD----TEFLGY 502

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L                         +++VK ++  G  V     G  VE+  D+TPF
Sbjct: 503 DSL-----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPF 539

Query: 521 YAEAGGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           YAE+GGQ+GD G     G         ++I DVQK    IFVH   +++G +     +  
Sbjct: 540 YAESGGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDA 599

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D + R+    +H+ATHLL  AL +I+GS  SQ GS +  D LRFD    +P++  EL 
Sbjct: 600 AVDAKLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELM 659

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN  ++    + T++M+ +DA  +GA A+ G KY ++VRVV V     GV S  L
Sbjct: 660 KIESLVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVP----GV-SMEL 714

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHVS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV  
Sbjct: 715 CGGTHVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKA 774

Query: 754 GNVVGRVEEIWEEYR--KLQLIHAKRKLQ-LNVEDLS--CHKIADVNFMSHIISEVDSKE 808
            +V GRVE I EE R  + ++   + K+  L    L+     I +   +   + +VD+  
Sbjct: 775 EDVNGRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADG 834

Query: 809 LKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-- 865
           LKS  + L   ++    +++G S  + K S++   +  +      V +   + K +GG  
Sbjct: 835 LKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGV------VKMGIQAGKFVGGIA 888

Query: 866 ----GGGGGRPHMAQSGG 879
               GGGGG+P+ AQ+GG
Sbjct: 889 KLCGGGGGGKPNFAQAGG 906


>gi|54025614|ref|YP_119856.1| alanyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|59798495|sp|Q5YTJ9|SYA_NOCFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54017122|dbj|BAD58492.1| putative alanyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 888

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 334/930 (35%), Positives = 498/930 (53%), Gaps = 100/930 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F + GH  +PS+SLI   DP L+F N+GMV FK  F GQE P Y   T+VQK
Sbjct: 6   IRRRFLDHFVRAGHTEVPSASLI-LADPNLLFVNAGMVQFKPYFLGQEAPPYPRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR G    D++ VG T RH+TFF+M GNFSFG YFKE AI LAW+L++K      F  D
Sbjct: 65  CVRTG----DIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAITLAWELISKPQSEGGFGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+++T Y +D EA ++W +++G+  ++I      DN+W M   GP GPCSEI+FD+G 
Sbjct: 121 PERIWVTAYQDDPEAAEIWHRMAGIPKERIQFRDGKDNYWDMGVPGPGGPCSEIYFDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQ------FEQQNKQERFILPKMSIDTGMGLERMAT 235
              G   G   + +RY+EIWNLVFMQ        +Q       LPK +IDTGMG+ER+A 
Sbjct: 181 AY-GKDGGPVADEDRYLEIWNLVFMQDVRGELSPKQGHPPIGSLPKKNIDTGMGIERVAM 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E++TG +Y  E  + V  RVI DH R+++ LI+DG+ P 
Sbjct: 240 LLQGVDNVYETDLLRPIIGKAEELTGRRYGAEHASDVRFRVIADHARTAAMLISDGVNPG 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N+GRGYVLRR++RR +  ARLLG  +P+M   +  +   M  +YPEL      I      
Sbjct: 300 NDGRGYVLRRLLRRIVRSARLLGAEKPVMAEFMQVVSDLMSPSYPELATDFDRIRTVAVG 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+  F KTL  G  L D   + +   G  +I   D AF L+DT+G P+D+  ++    GL
Sbjct: 360 EETAFLKTLTTGSTLFDNTAAAVKAKGGTKIAGAD-AFTLHDTYGFPIDLTLEMAAEAGL 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFM 469
           + +D   F   + EQR RA+  +        +  I+  L ++ GAT+F G+D        
Sbjct: 419 S-VDEEGFRSLMAEQRRRAKEDAAARKHAHADLSIYKELVDR-GATEFTGFD-------- 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                        +LT+   + V A++  G  V  A  GQ VEV+ D++P YAE+GGQ+ 
Sbjct: 469 -------------ELTS--EAHVLALIADGVRVPTATQGQDVEVILDRSPLYAESGGQIA 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588
           D G     G++L++ DVQK A+ ++VH   VE+G + TE  +VL   D   RR  +  HS
Sbjct: 514 DRGSITASGLKLRVNDVQKIAKKLWVHKTTVEQGQI-TEGDVVLAQADPAWRRGATQGHS 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            TH++H AL  +LG +  Q GS   P  LRFD      ++  +   IE   ND +  + P
Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSEQQKADIEAVSNDAVGADFP 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T + +   A   GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I  +
Sbjct: 633 VNTFVTDLPKAKQMGALALFGENYGDEVRVVEI----GGPFSMELCGGTHVQHSSQIGPI 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V  RVE++ E   
Sbjct: 689 TLLGESSVGSGVRRVEAFVGLDSYKYLAKERALLAGVASSLKVPSEEVPARVEQLVE--- 745

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVD-----------------SKELK 810
                    +L++  ++L   KIA V +     + E +                 + +L+
Sbjct: 746 ---------RLKVAEKELERTKIAAVLSSAGKFVEEAERVGRVLLVAAAAPEGVAAGDLR 796

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---- 864
           ++   ++ +  S   +++L+G + + K   ++ V +      +A ++   + +++G    
Sbjct: 797 TLATDIRGRFGSEPAVVVLLG-NADGKVPFVVAVNK------SAQEIGVKAGELVGSFGP 849

Query: 865 --GGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              G GGG+P MAQ  G + +     +A V
Sbjct: 850 SIAGRGGGKPEMAQGAGSDPSGIPAGLAAV 879


>gi|269218535|ref|ZP_06162389.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211646|gb|EEZ77986.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 888

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 295/777 (37%), Positives = 439/777 (56%), Gaps = 50/777 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L++F K+ H + PS SL+   DP+++FT +GMVPF       E   +  V +
Sbjct: 3   TAEIRQRWLDYFAKHDHHIAPSVSLV-SPDPSILFTVAGMVPFIPYILNTEPAPWPTVAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI LAW LLT       +
Sbjct: 62  VQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAIDLAWGLLTSSLAEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T+++ED  ++  W ++ GL +D I ++   +  WS  + GP G C EI +D
Sbjct: 118 GLDGDRLWMTIWEEDAVSYDYWTRVIGLPSDHIQKLPFKEISWSTGQPGPAGACCEIHYD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G E  P G P +  +G+R++EIWNLVF +F   E +      +  L + +IDTG GLER
Sbjct: 178 RGPEYGPDGGPAADVQGDRFLEIWNLVFDEFVRGEGEGHDFELVGKLERTAIDTGAGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +A +LQ K N Y+ID    +I+A+E++ G KY  +  + V  RV+ DH+RSS  LI DG+
Sbjct: 238 IAYLLQGKANMYEIDEVYPVIRATEEIAGKKYGADAEDDVRMRVVADHVRSSLMLIGDGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P N+GRGYVLRR++RRA+   RLLG  + ++  L+      M  +YPEL      I + 
Sbjct: 298 RPGNDGRGYVLRRLIRRAVRSIRLLGVDDVVLPSLIATSKDAMKDSYPELEAEFSRILDV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             +E+  F +TL  G  + D   S   G +++L+G  AF L+DT+G P+D+  ++   +G
Sbjct: 358 ASAEEAAFRRTLASGTQIFDLAASKASGGNKVLSGKDAFALHDTYGFPIDLTLEMASEQG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLLRGSK 467
           L  +D   F + ++EQ+ RARA +    +G  +   ++  L E  G+T+F+GY       
Sbjct: 418 LK-VDEGEFRRLMQEQKDRARADARAKKTGHVDSAVYNEILDESGGSTRFLGYS------ 470

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                              G    + A++  G  V  A +  +V+VV DQTPFYAE GGQ
Sbjct: 471 -----------------ETGAEGKIVALLVDGVSVPAATAPAEVDVVLDQTPFYAEMGGQ 513

Query: 528 LGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           L D G  ++  G  +Q+ DVQ   +G+ VH   V  G +     +   ID   R Q++ +
Sbjct: 514 LADRGTISVEGGGLVQVDDVQSPVKGLNVHRGTVSEGTIAVGEKVFAQIDVDRRGQIARS 573

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H++TH++H AL   LG   +Q GS  +P  LRFD  H + I +  +  IE  VND + +N
Sbjct: 574 HTSTHMIHKALHEFLGEQATQAGSENSPSRLRFDFRHGEQIPADVVMGIEGRVNDRLREN 633

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM+ + A A+GA AL G KY   VRVVS++       S  LC GTHV STG+I 
Sbjct: 634 LEVTDEIMDLDKARAAGAMALFGEKYGKEVRVVSIDDS----WSKELCAGTHVPSTGKIG 689

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           L+ I+ ESSI +G+RRI+A+ G+ A ++   +   +  LA  +      +  R++ +
Sbjct: 690 LVSILGESSIGSGVRRIDALVGEGAYAYGAKEHALVSQLAGIVGARPEELPERIDAV 746


>gi|15609692|ref|NP_217071.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842093|ref|NP_337130.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|148662394|ref|YP_001283917.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823751|ref|YP_001288505.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968834|ref|ZP_02551111.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404504|ref|ZP_03416685.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215427951|ref|ZP_03425870.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431513|ref|ZP_03429432.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|253798364|ref|YP_003031365.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435]
 gi|289553655|ref|ZP_06442865.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605]
 gi|289746347|ref|ZP_06505725.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751174|ref|ZP_06510552.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92]
 gi|289754673|ref|ZP_06514051.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054]
 gi|294994334|ref|ZP_06800025.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635166|ref|ZP_06952946.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732158|ref|ZP_06961276.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|306776829|ref|ZP_07415166.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001]
 gi|306780594|ref|ZP_07418931.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002]
 gi|306785357|ref|ZP_07423679.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003]
 gi|306789957|ref|ZP_07428279.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004]
 gi|306794037|ref|ZP_07432339.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005]
 gi|306798436|ref|ZP_07436738.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006]
 gi|306804315|ref|ZP_07440983.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008]
 gi|306807646|ref|ZP_07444314.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007]
 gi|306969847|ref|ZP_07482508.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009]
 gi|306972944|ref|ZP_07485605.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010]
 gi|307080655|ref|ZP_07489825.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011]
 gi|307085242|ref|ZP_07494355.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012]
 gi|313659492|ref|ZP_07816372.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|3122879|sp|O07438|SYA_MYCTU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830157|sp|A5U5Q5|SYA_MYCTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3261815|emb|CAB09762.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE)
           (ALANINE TRANSLASE) (ALARS) [Mycobacterium tuberculosis
           H37Rv]
 gi|13882374|gb|AAK46944.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|148506546|gb|ABQ74355.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722278|gb|ABR06903.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis F11]
 gi|253319867|gb|ACT24470.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435]
 gi|289438287|gb|EFD20780.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605]
 gi|289686875|gb|EFD54363.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289691761|gb|EFD59190.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92]
 gi|289695260|gb|EFD62689.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054]
 gi|308214756|gb|EFO74155.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001]
 gi|308326528|gb|EFP15379.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002]
 gi|308329949|gb|EFP18800.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003]
 gi|308333566|gb|EFP22417.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004]
 gi|308337594|gb|EFP26445.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005]
 gi|308341259|gb|EFP30110.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006]
 gi|308345967|gb|EFP34818.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007]
 gi|308349066|gb|EFP37917.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008]
 gi|308352656|gb|EFP41507.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009]
 gi|308357634|gb|EFP46485.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010]
 gi|308361576|gb|EFP50427.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011]
 gi|308365196|gb|EFP54047.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012]
 gi|323718828|gb|EGB27984.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CDC1551A]
 gi|328458134|gb|AEB03557.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 4207]
          Length = 904

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 345/920 (37%), Positives = 505/920 (54%), Gaps = 62/920 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
           E  P G P  SE+  RY+E+WNLVFMQ E+     K++  IL   P+ +IDTGMG+ER+A
Sbjct: 181 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291
            VLQ+  N Y+ DL + +I    +V    Y+ GN  + V +R+I DH R+++ LI DG+ 
Sbjct: 239 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR S+  
Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 476

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                V  ++ P+ + +GV+               A  GQ+VE+V D+TP YAE+GGQ+ 
Sbjct: 477 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 522

Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D   RR  + 
Sbjct: 523 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +  
Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 642

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     + A A GA AL G  Y D VRVV    E GG  S  LCGGTHVS+T +I
Sbjct: 643 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 698

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 758

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + ++               +I +V  ++  +S  + + +L+S++  ++ K
Sbjct: 759 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 818

Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + S   ++  I++ +  +V   V      +DL  R N  DL +  A  +  G GGG+  +
Sbjct: 819 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADL 875

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           AQ  G N    D A+  V S
Sbjct: 876 AQGSGKNPTGIDAALDAVRS 895


>gi|31793738|ref|NP_856231.1| alanyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638440|ref|YP_978664.1| alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990934|ref|YP_002645621.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260205877|ref|ZP_05773368.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289575263|ref|ZP_06455490.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85]
 gi|41018172|sp|Q7TYB1|SYA_MYCBO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830151|sp|A1KLQ3|SYA_MYCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|31619332|emb|CAD94770.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE)
           (ALANINE TRANSLASE) (ALARS) [Mycobacterium bovis
           AF2122/97]
 gi|121494088|emb|CAL72566.1| Probable alanyl-tRNA synthetase alaS [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774047|dbj|BAH26853.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289539694|gb|EFD44272.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85]
          Length = 904

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 345/920 (37%), Positives = 505/920 (54%), Gaps = 62/920 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
           E  P G P  SE+  RY+E+WNLVFMQ E+     K++  IL   P+ +IDTGMG+ER+A
Sbjct: 181 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRNNIDTGMGVERIA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291
            VLQ+  N Y+ DL + +I    +V    Y+ GN  + V +R+I DH R+++ LI DG+ 
Sbjct: 239 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR S+  
Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 476

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                V  ++ P+ + +GV+               A  GQ+VE+V D+TP YAE+GGQ+ 
Sbjct: 477 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 522

Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D   RR  + 
Sbjct: 523 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +  
Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 642

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     + A A GA AL G  Y D VRVV    E GG  S  LCGGTHVS+T +I
Sbjct: 643 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 698

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 758

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + ++               +I +V  ++  +S  + + +L+S++  ++ K
Sbjct: 759 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 818

Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + S   ++  I++ +  +V   V      +DL  R N  DL +  A  +  G GGG+  +
Sbjct: 819 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADL 875

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           AQ  G N    D A+  V S
Sbjct: 876 AQGSGKNPTGIDAALDAVRS 895


>gi|116327492|ref|YP_797212.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122284708|sp|Q054G6|SYA_LEPBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116120236|gb|ABJ78279.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 940

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 328/965 (33%), Positives = 483/965 (50%), Gaps = 121/965 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   T
Sbjct: 5   SVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI  A D        D+
Sbjct: 65  SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHLGFDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180
            ++++TVY +D+EA K+W    G+  ++I+R+   DNFW  A ++G CGPCSE++ D+G 
Sbjct: 121 EKIWVTVYTDDDEAEKIWI-TKGIPKERIMRLGKKDNFWGPAGDSGACGPCSELYLDRGV 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                +C   G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A 
Sbjct: 180 EKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE-------------------GNNIVNHRVIV 276
           +LQ   + YD +  + +I   E+++G+KY+                    N     RV+ 
Sbjct: 240 LLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAFRVVT 299

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+  +       
Sbjct: 300 DHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEIYKPR 359

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDT 393
           YPEL +    I++T+ +E+E F KTL+ GL  ++ +++     GK  I +G  AF LY T
Sbjct: 360 YPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKT-IFSGADAFLLYGT 418

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P ++ ++I+  +GL   D   F + LE+ R  +R       S    K+     +   
Sbjct: 419 YGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRE------SWKANKVSLMTGQSVE 471

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            T+F+GY  L G                      +  +       G + E    GQ   +
Sbjct: 472 KTEFLGYSSLSGK-------------------GNIIHLFNENKPAGALKE----GQAGAI 508

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V ++TPFY E GGQ+GDTG         ++ D QK+ + + +H   V  G       L  
Sbjct: 509 VLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDTQKEND-VILHFGEVLSGEFSIAQELEA 567

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++   R +L  +HS THLL+ AL  +LG HV Q GS ++P+ LRFD +H   +TS E++
Sbjct: 568 EVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSKEIR 627

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN+ I +N PVVT+ +  EDA   GA A  G KY DRVRVV +     G  S   
Sbjct: 628 KIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDASVEF 682

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR----------------------- 730
           CGGTHVS TGEI   +I  ESS  AG RRIE + G                         
Sbjct: 683 CGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLNLKI 742

Query: 731 ------------ARSHLMGQDEKLKSL-------ASFLKVSQGNVVGRVEEIWEEYRKLQ 771
                         S++ G DE  + L        +F +     +  ++EE    + K++
Sbjct: 743 KSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFLKMK 802

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                R  + N   +     S         +S I  + D   LK + D L+ + +  +++
Sbjct: 803 KSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVR-EKNLLV 861

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++G      ASV+I  +  L+ +  +  DL R   ++L GG GGG+P MAQ GG      
Sbjct: 862 ILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQNL 920

Query: 886 DQAIA 890
           + AI+
Sbjct: 921 ESAIS 925


>gi|30688660|ref|NP_680210.2| EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/
           ligase, forming aminoacyl-tRNA and related compounds /
           nucleic acid binding / nucleotide binding [Arabidopsis
           thaliana]
 gi|322510075|sp|Q9FFC7|SYAP_ARATH RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS;
           AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName:
           Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein
           EMBRYO DEFECTIVE 86; Flags: Precursor
 gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 978

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 341/921 (37%), Positives = 509/921 (55%), Gaps = 97/921 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           SIR  FLEFF   GH++LPSSSL+P  DPT++ T +GM+ FK IF G+        TT Q
Sbjct: 82  SIRRRFLEFFASRGHKVLPSSSLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCATTAQ 140

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           +C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L   R+
Sbjct: 141 RCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPANRV 196

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++++Y++D+EAF++WK   G+S ++I R+   DNFW+   TGPCGPCSE+++D     P 
Sbjct: 197 WVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYD---FYPE 253

Query: 186 -GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKM---SIDTGMGLERMATVLQE 239
            G     + G+  R+IE +NLVFMQ+   NK E  +L  +   +IDTG+GLER+A +LQ+
Sbjct: 254 RGYDEDVDLGDDTRFIEFYNLVFMQY---NKTEDGLLEPLKQKNIDTGLGLERIAQILQK 310

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
             NNY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N G
Sbjct: 311 VPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIG 370

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL---------IQAKLLI 347
           RGYV+RR++RRA+   + LG    +  +L  A    +     EL         ++A  +I
Sbjct: 371 RGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRII 430

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL------GKD-EILNGDVAFKLYDTHGLPLDI 400
           EE +R E+  F KTL+RG  LLD  L+         KD   L+G  AF LYDT G P++I
Sbjct: 431 EE-IRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEI 489

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
             ++   RG++ ID+  F   +E QR +++ AH++      T +    + +    T+F+G
Sbjct: 490 TAEVAEERGVS-IDMNGFEVEMENQRRQSQAAHNV---VKLTVEDDADMTKNIADTEFLG 545

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L                          ++VK+++  G+ V     G +VEV+ D+TP
Sbjct: 546 YDSL-----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTP 582

Query: 520 FYAEAGGQLGDTG--CAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE+GGQ+ D G      DG +    ++++DVQK  + IFVH   V+ G L     +  
Sbjct: 583 FYAESGGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEA 641

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   EL+
Sbjct: 642 AVDADLRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELE 701

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA 692
            IE  +N  I     + T+++   DA  +GA A+ G KY++  VRVV V     GV S  
Sbjct: 702 EIECLINRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVP----GV-SME 756

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV 
Sbjct: 757 LCGGTHVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVK 816

Query: 753 QGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI------ISEV 804
             +V  RVE + EE R  + +    + K  +    +  +K   V     I      + + 
Sbjct: 817 AEDVTNRVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDT 876

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           D+  LKS  + L   ++  + +++G S EK    L+            V L   + K +G
Sbjct: 877 DADSLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSP-----GVVSLGVQAGKFIG 931

Query: 865 ------GGGGGGRPHMAQSGG 879
                 GGGGGG+P+ AQ+GG
Sbjct: 932 PIAKLCGGGGGGKPNFAQAGG 952


>gi|205830240|sp|A5GWM4|SYA_SYNR3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 882

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 347/915 (37%), Positives = 520/915 (56%), Gaps = 69/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           + IR  FLEF++  GH+ +PS+SLIP  DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 12  AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 69

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD +
Sbjct: 70  SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPK 125

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    +
Sbjct: 126 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL 185

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   NN
Sbjct: 186 -GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNN 244

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   LI+ +  + G+ Y   ++    + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 245 YETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 304

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR + + RLLG ++P ++ +  A    M +AYP+L + + LI   L+ E+ RF +
Sbjct: 305 LRRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLE 364

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ ++I    GL+ +D+  F  
Sbjct: 365 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEA 421

Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           A+E QR RA+A ++ +     G  E++   L+    AT F GY+ L              
Sbjct: 422 AMEAQRQRAKAAAVSIDLTLQGAIEQMAADLE----ATAFRGYEAL-------------- 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           + P         S V A+V  GE  + A +G  V++V D TPFY E GGQ+GD G   G 
Sbjct: 464 EHP---------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQ 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + + I  V ++ + + VHH  +ERG L     +   +D   RR+   +H+ATHLL  AL
Sbjct: 515 DLIVSIESVNRQRD-VSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++ S +SQ GS +  D LRFD    + +T AEL+ +E  +N  I +   +  + M  E
Sbjct: 574 KQVVDSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIE 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IVSE+ + 
Sbjct: 634 AAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSEAGVA 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA+ G    ++L  +D  +K L+   KV    +  RV  + EE +      A  
Sbjct: 689 SGIRRIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAA 748

Query: 778 KLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGIS 831
           + +L              I +   +   +  VD   L+S    L  ++  G  ++L G+ 
Sbjct: 749 RSELAVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLP 808

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLGG------GGGGGRPHMAQSGGPNGN 883
                  +I+V       F    +A+   + + +GG      GGGGGRP++AQ+GG +G 
Sbjct: 809 DPSDLGKVILVAA-----FGKAVVAKGQKAGQFIGGVAKLCGGGGGGRPNLAQAGGRDGA 863

Query: 884 KADQAIAGVASFLKK 898
             D A+    S L++
Sbjct: 864 ALDGALEQAKSSLQQ 878


>gi|19746355|ref|NP_607491.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|24418690|sp|Q8P0E6|SYA_STRP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19748550|gb|AAL97990.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
          Length = 872

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 330/918 (35%), Positives = 497/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI   ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIGWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE      I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+  F I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALLFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKERGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R  Q  +A+ K +              +   V F++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|163840721|ref|YP_001625126.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|205830238|sp|A9WSC4|SYA_RENSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|162954197|gb|ABY23712.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 896

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 334/927 (36%), Positives = 490/927 (52%), Gaps = 84/927 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +L+FF   GH ++PS+SLI   DP+++F  +GMVPF    +G+EK  Y   T+VQK
Sbjct: 6   IAQRWLDFFAAKGHTVVPSASLISA-DPSILFNIAGMVPFVPYLSGREKAPYDRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT       + LD
Sbjct: 65  CIRTA----DIDEVGKTVRHGTFFQMCGNFSFGDYFKEGAITFAWELLTSSIADGGYGLD 120

Query: 122 QRRLYITVY----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             RL+ TVY    ++DEEA  +W+   G+  ++I      DNFWS  + GP GPCSEI++
Sbjct: 121 PSRLWATVYVDGTEKDEEARAIWRDKIGIPEERIQGTGKADNFWSTGQPGPGGPCSEIYY 180

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLE 231
           D G    G   G   +  RYIEIWNLVFMQ++    ++K +  I   LP  +IDTG+GLE
Sbjct: 181 DLGAKY-GQEGGPIVDETRYIEIWNLVFMQYQLSAVRSKTDFDIAGDLPNRNIDTGLGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSS 282
           R+A +LQ   N Y+ D  + ++ A+ ++ G  Y            + V  RV+ DH+RS+
Sbjct: 240 RLAMILQGVENLYETDQVRPVLDAAAELAGKDYTSTVDPADPHHADDVRLRVVADHIRSA 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             LIADG+ P+NEGRGYVLRR++RRA+   RL+G  +P +  LLP     M   YP + +
Sbjct: 300 LMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLMGVEKPCLPALLPVSREAMKGFYPAVEE 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
               I     +E++ F +T+  G   LD  V     K++ L+G  AF L+DT+G P+D+ 
Sbjct: 360 DFERISRIAYAEEKSFLRTIASGTARLDEAVTESKAKNQPLSGAEAFALHDTYGFPIDLT 419

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            ++    GLA +D   F   + EQR RA+A S    SG  +   F+     G T F GY 
Sbjct: 420 LEMAAEAGLA-VDETGFRALMLEQRQRAQADSREKKSGHADLSAFNELLAQGQTVFTGYS 478

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L G                        S ++ ++  G+ + +A  GQ++E+V  +TPFY
Sbjct: 479 ELDGE-----------------------SAIRGLLSGGQPIAKASQGQEIELVLAETPFY 515

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AEAGGQ  DTG   GDG  +++ DVQ+  + + VH AIV  G +    S+   +D + R 
Sbjct: 516 AEAGGQAADTGLISGDGFVIEVLDVQRPVKDLSVHKAIVREGEVAIGASVRAAVDRERRH 575

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ TH++H AL  ILG    Q GS      LRFD    + +++A    IE+  N 
Sbjct: 576 AAEQAHTGTHIVHAALHQILGPEALQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVANI 635

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  N  V T  M  ++A A GA AL G  Y  RVRVV ++    G  S  LCGGTHV +
Sbjct: 636 AIRNNYSVQTTEMPIDEAKALGAMALFGENYGSRVRVVEID----GAWSRELCGGTHVDT 691

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV- 760
           T  I  L ++ E S+  G RR+EA  G  A  HL  +   +  L   +KV    +  R+ 
Sbjct: 692 TSRIGSLTLLGEQSVGYGNRRVEAFVGMDAFRHLAAERALVSELTEIMKVPSTQLADRIG 751

Query: 761 ---------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELK 810
                    E+  +  RK QL  A  +L          ++     ++H + ++  + EL+
Sbjct: 752 ATLAKLRATEKELDRLRKAQLTAAAGELTTK-----AQQVGKTRLLTHDVGQIGGADELR 806

Query: 811 SVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD---LARLSAKVLGG 865
           S+   L++++  ++ ++ L G S ++    +++V  +   R   V    L +L+A VL G
Sbjct: 807 SLALDLRERLGSEAAVVALTGESNDRP---MVLVATNEAARAAGVKAGALVKLAAGVL-G 862

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGGG+  +AQ GG N  +   A+A +
Sbjct: 863 GGGGGKDDVAQGGGSNVGQIPAALAAI 889


>gi|145295754|ref|YP_001138575.1| alanyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|205830038|sp|A4QEK7|SYA_CORGB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|140845674|dbj|BAF54673.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 888

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 330/902 (36%), Positives = 497/902 (55%), Gaps = 64/902 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F   GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++    T++
Sbjct: 6   IRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       F 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVADGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233
           GE   G   G   +  RY+EIWNLVFM+ E  Q   ++ F     LPK +IDTGMG+ER+
Sbjct: 181 GEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFEILGDLPKKNIDTGMGVERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ+  N Y+ DL + +I  +E +TG KY  +N   +  RVI DH R+   LI DG+ 
Sbjct: 240 ACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLILDGVT 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  I    
Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRERIMRVA 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++    G
Sbjct: 360 VTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEMAAEAG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F+  + EQRSRA+A S     G T+   +        T F G++ L      
Sbjct: 420 LE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELDSQ--- 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GGQLG
Sbjct: 476 --------------------SKVLGLLSDGAKISEATEGQEVEVILDQSPLYAESGGQLG 515

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G   +GD + L + DVQK  + ++VH A+V  G L     +V ++D Q R      H+
Sbjct: 516 DRGQILLGDTV-LDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAARQAHT 574

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG    Q GS   P  LRFD  +++ +T A+++ I+   N+ +  +  
Sbjct: 575 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVDTDWA 634

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+ + +I  +
Sbjct: 635 VNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQIGPV 690

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767
            ++ ESSI +G+RRIEA +G  + ++L  +    + LAS LK     +  RV ++ ++  
Sbjct: 691 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLVDKLK 750

Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI- 820
              ++++ +H +++L     DL  +  +I  V   +  +    ++ +L+++   L+ K+ 
Sbjct: 751 AAEKEIEALH-RQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKDKLG 809

Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + G++++   +  K   V+      +    ++ +L +L    +  G GGG+  +AQ  G
Sbjct: 810 DREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQGSG 868

Query: 880 PN 881
            N
Sbjct: 869 AN 870


>gi|116331894|ref|YP_801612.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280371|sp|Q04QG6|SYA_LEPBJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116125583|gb|ABJ76854.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 940

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 328/965 (33%), Positives = 482/965 (49%), Gaps = 121/965 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   T
Sbjct: 5   SVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI  A D        D+
Sbjct: 65  SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHLGFDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180
            ++++TVY +D+EA K+W    G+  ++I R+   DNFW  A ++G CGPCSE++ D+G 
Sbjct: 121 EKIWVTVYTDDDEAEKIWI-TKGIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRGV 179

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                +C   G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A 
Sbjct: 180 EKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE-------------------GNNIVNHRVIV 276
           +LQ   + YD +  + +I   E+++G+KY+                    N     RV+ 
Sbjct: 240 LLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAFRVVT 299

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+  +       
Sbjct: 300 DHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEIYKPR 359

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDT 393
           YPEL +    I++T+ +E+E F KTL+ GL  ++ +++     GK  I +G  AF LY T
Sbjct: 360 YPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKT-IFSGADAFLLYGT 418

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P ++ ++I+  +GL   D   F + LE+ R  +R       S    K+     +   
Sbjct: 419 YGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQLSRE------SWKANKVSLMTGQSVE 471

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            T+F+GY  L G                      +  +       G + E    GQ   +
Sbjct: 472 KTEFLGYSSLSGK-------------------GNIIHLFNENKPAGALKE----GQAGAI 508

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V ++TPFY E GGQ+GDTG         ++ D QK+ + + +H   V  G       L  
Sbjct: 509 VLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDTQKEND-VILHFGEVLSGEFSIAQELEA 567

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++   R +L  +HS THLL+ AL  +LG HV Q GS ++P+ LRFD +H   +TS E++
Sbjct: 568 EVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSKEIR 627

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN+ I +N PVVT+ +  EDA   GA A  G KY DRVRVV +     G  S   
Sbjct: 628 KIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDASVEF 682

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR----------------------- 730
           CGGTHVS TGEI   +I  ESS  AG RRIE + G                         
Sbjct: 683 CGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLNLKI 742

Query: 731 ------------ARSHLMGQDEKLKSL-------ASFLKVSQGNVVGRVEEIWEEYRKLQ 771
                         S++ G DE  + L        +F +     +  ++EE    + K++
Sbjct: 743 KSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFLKMK 802

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                R  + N   +     S         +S I  + D   LK + D L+ + +  +++
Sbjct: 803 KSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVR-EKNLLV 861

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++G      ASV+I  +  L+ +  +  DL R   ++L GG GGG+P MAQ GG      
Sbjct: 862 ILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQNL 920

Query: 886 DQAIA 890
           + AI+
Sbjct: 921 ESAIS 925


>gi|271967372|ref|YP_003341568.1| alanine--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270510547|gb|ACZ88825.1| Alanine--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 890

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 315/786 (40%), Positives = 446/786 (56%), Gaps = 56/786 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   FL FF++ GH ++PS+SLI   DPTL+   +GMVPFK  F GQ+KP +   T+V
Sbjct: 4   AEIARRFLRFFEERGHTVVPSASLI-AEDPTLLLVPAGMVPFKPYFLGQQKPPFNRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE+AI LAW+LLTK      F 
Sbjct: 63  QKCVRT----PDIDEVGKTTRHATFFQMLGNFSFGDYFKEQAIPLAWELLTKPESEGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             Q RL++TVY +D+EA+ +W    G+ +++I R    DN+W M   GP GPCSEI++D+
Sbjct: 119 FPQERLWVTVYQDDDEAYGIWHDKVGVPSERIQRRGLEDNYWHMGVPGPGGPCSEIYYDR 178

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLER 232
           G E    G P + E   RY+E+WN VFMQF+    + +        LP  S+DTGMGLER
Sbjct: 179 GPEYGRDGGPVADEN--RYLEVWNNVFMQFQLSAVRSKVDFDVAGELPARSVDTGMGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           MA +LQ   N Y+ID    ++  + ++T  +Y  +    V+ RVI DH+R+   L+ADG+
Sbjct: 237 MAAILQGVDNIYEIDTTYKILDRAAELTKTRYGRDERADVSLRVIADHVRTGVMLVADGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEE 349
           LP+NEGRGYVLRRI+RRA+   RLLG  E   MH L A+  + MG  YPEL      I  
Sbjct: 297 LPSNEGRGYVLRRILRRAIRNLRLLGAGEERYMHELTAVTIDVMGEQYPELKADAPQIHG 356

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            + +E+  F  TL  G  + D  +      GK   L G+ AF+L+DT+G P+D+  ++  
Sbjct: 357 VIDAEEASFLGTLRTGTAIFDVAVEETRRKGKG-TLAGEQAFQLHDTYGFPIDLTLEMAS 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F + ++EQR RA+A +    +G  +  ++  + EK G  +F+GYD    
Sbjct: 416 EQGLK-VDEEGFRRLMKEQRDRAKADAAAKKTGNADISVFGQILEKTGRVEFLGYD---- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                   +V  +   I L  G           G  V  A +G +VEVV  +TPFYAE G
Sbjct: 471 --------QVTAEAEVIGLLVG-----------GAPVPAAGAGTEVEVVLGRTPFYAEGG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL D G    DG  ++I DVQ    G+ VH   V  G +R        ID + RR +S 
Sbjct: 512 GQLADQGVIRTDGAEVEIVDVQSPVSGVVVHRGKVRAGEIRVGDQAQAEIDVERRRAISR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H      LG   +Q GS  +P   RFD T +  +  + L+ +ED VN ++  
Sbjct: 572 SHTATHLVHRGFRNALGETAAQAGSENSPGRFRFDFTAAGAVAPSMLRDVEDEVNAVLIN 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V     ++ +A A GA AL G KY + VR+V V     G +S  LCGGTHVSS+G++
Sbjct: 632 DLTVNAFHTSQAEARAMGALALFGEKYGETVRIVEV-----GDYSRELCGGTHVSSSGQL 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ ++ E+SI AG+RR+EA+ G  A   L  +   +  L+  LK  +  +  R++ I  
Sbjct: 687 GLVKVLGEASIGAGVRRVEALVGLDAFRFLARESVLVAQLSEQLKARREELPERIDGIVT 746

Query: 766 EYRKLQ 771
             R  +
Sbjct: 747 RLRAAE 752


>gi|269126369|ref|YP_003299739.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311327|gb|ACY97701.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 889

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 324/871 (37%), Positives = 484/871 (55%), Gaps = 73/871 (8%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL FF++ GH ++PS+SL+   DPTL+   +GMVPFK  F GQ  P    +T+ QKCVR 
Sbjct: 10  FLAFFEERGHTVVPSASLV-AEDPTLLLVPAGMVPFKPYFLGQRTPPAPRMTSAQKCVRT 68

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125
                D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT+      F   + +L
Sbjct: 69  ----PDIDEVGKTTRHATFFQMLGNFSIGDYFKEGAIPYAWELLTRPVSDGGFGFPEDKL 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++TVY +D+EA  +W +  G+  ++I R    DN+W M   GP GPCSEI++D+G    G
Sbjct: 125 WVTVYLDDDEAADIWHRKVGIPVERIQRRGLADNYWHMGVPGPGGPCSEIYYDRGPAY-G 183

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQE 239
              G   + +RY+E+WNLVFMQ +    + +        LP  +IDTGMGLERMA +LQ 
Sbjct: 184 REGGPIADEDRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGLERMAAILQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N Y+ D  + ++  + ++TG +Y  +    V+ RV+ DH+R+ + L+ADG++PANEGR
Sbjct: 244 VDNIYETDTLRRILDKAAELTGTRYGRDRRADVSLRVVADHVRAGTMLVADGVIPANEGR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC-TEMGSAYPELIQAKLLIEETLRSEDE 356
           GYVLRR++RRA+   RLLG  +  +MH L A+    MG  Y ELI     I   + +E+E
Sbjct: 304 GYVLRRLLRRAIRNLRLLGGQDAGLMHELTAVAIAAMGEQYTELISTAANIHAVIDAEEE 363

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  G  + D  ++   +   ++L+G  AF L+DT+G P+D+  ++   +GL+ +D
Sbjct: 364 RFLQTLRTGTAIFDAAVAETKRAGKQVLSGSQAFTLHDTYGFPIDLTLEMAAEQGLS-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLLRGSKFMKED 472
              F + LEEQR RA+A +    +G  +       L    G   F+GY  + G     E 
Sbjct: 423 EEGFRRLLEEQRQRAKADAAAKKTGNLDVSVLGELLDRAGGKVDFLGYHDVTG-----EA 477

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           R V        L NG S            V  A +G +VEVV D+TPFYAE GGQL D G
Sbjct: 478 RVVGL------LVNGAS------------VPAAGAGTEVEVVLDRTPFYAEGGGQLADQG 519

Query: 533 -CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
               G G  +++ DVQ    G+ VH   V  G  +   +    ID + RR +S +H+ATH
Sbjct: 520 RIRTGGGAEIEVHDVQSPLPGLIVHRGKVRAGEAQAGDTAFAEIDVERRRAISRSHTATH 579

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           ++H      LG   +Q GS  +P   RFD T + P+  + L+ +ED VN ++  +L V  
Sbjct: 580 MVHAGFRRALGESAAQAGSENSPGRFRFDFTSAGPVPPSVLRDVEDEVNAVLVDDLDVRA 639

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E A A GA AL G KY D VRVV V     G +S  LCGGTHV+ +G++ L+ ++
Sbjct: 640 FTTSIEQARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVARSGQLGLIKVL 694

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GNVVGRVEEIW 764
            ESSI AG+RRIEA+ G  A   L  +   +  L+  LKV +         V+GR+ E  
Sbjct: 695 GESSIGAGVRRIEALVGIDAFRFLARESVLVSQLSEQLKVRKEELPERISTVIGRLREAE 754

Query: 765 EEYRKL---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQKKI 820
           +E  +L   Q++     L  + +D     I  + +++H   +   + +L+ +   ++ ++
Sbjct: 755 KELERLRSAQVLAVAGSLADSAKD-----IDGIAYVAHRAPDGTTADDLRKLALDVRGRL 809

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDR 849
            S   ++++ G+ K++   V++ VTE   +R
Sbjct: 810 ASRPAVVLITGVPKDRPV-VVVAVTEGARER 839


>gi|68536115|ref|YP_250820.1| alanyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|83305843|sp|Q4JVF5|SYA_CORJK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68263714|emb|CAI37202.1| alaS [Corynebacterium jeikeium K411]
          Length = 887

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 332/923 (35%), Positives = 489/923 (52%), Gaps = 74/923 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F+E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++    T++
Sbjct: 6   IRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   +     
Sbjct: 65  QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTNPVEEGGLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TV+ +D+EA ++W K  G+   KI R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTG 227
           G       P   +EG       RYIEIWNLVFM+ E      + N +    LPK +IDTG
Sbjct: 181 G-------PEHGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285
           +G+ER+A +LQ+  N Y+ DL + +I  +++VTG KY  +  N V  RVI DH R+   L
Sbjct: 234 LGIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLML 293

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+ P NEGRGY+LRR++RR +  ARLLG T   +   +  +   M  +YPE+ +   
Sbjct: 294 MLDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYE 353

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQ 402
            I     +E++ F KTL+ G  + D   +H  K+   + + GDVAF L+DTHG P+D+ Q
Sbjct: 354 RIRAVALAEEKSFLKTLESGSQMFDN-WAHEAKERGEDTVPGDVAFSLHDTHGFPIDLTQ 412

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++     L  +DI  F++ + EQ++RA+A +     G  ++  +        T F GY+ 
Sbjct: 413 EMAAEADLK-VDIDGFHELMAEQKARAKADNNAKKLGHVDQTIYRPFVDNHPTVFTGYEN 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L       ++  VL                  I++ G +VE A  G   +V+ D+TPFYA
Sbjct: 472 L------ADEASVL-----------------GIIRDGALVETAPEGAAAQVILDRTPFYA 508

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAGGQ+ D G         ++ DVQK  + ++VHH  V  G L     +  T+D   R Q
Sbjct: 509 EAGGQMADRGEMTSTSGAARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQ 568

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HS THL+H AL  +LG    Q GS   P  LRFD  + + +T  +L  IE+  N  
Sbjct: 569 ARQAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTEHQLNQIEEIANGA 628

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGG HV  +
Sbjct: 629 VDSDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHS 684

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++  + ++ ESS+ +G+RRIEA TG  +   L  +   +  LA+ LK     +  R++ 
Sbjct: 685 SQVGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVSGLATSLKTPSEELPDRIDA 744

Query: 763 IWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSV-MDA 815
           +  + +       QL   + + Q+         I +V  ++  + E V + +L+++ MDA
Sbjct: 745 LTAKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAEQLPEGVAAGDLRTLAMDA 804

Query: 816 LQK-KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +  +++   +  EK   V       +     A +L +   + +  G GGG+P M
Sbjct: 805 KNRLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKTFGEKV-AGRGGGKPAM 863

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ  G +       I  V S L+
Sbjct: 864 AQGSGSDAAGISAGIEAVKSALR 886


>gi|139473577|ref|YP_001128293.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|205830227|sp|A2RDY3|SYA_STRPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134271824|emb|CAM30058.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 872

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 330/918 (35%), Positives = 500/918 (54%), Gaps = 74/918 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G      
Sbjct: 1   MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVITEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT+G P+++ ++
Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G   ID   F  A++EQ+ RARA  +  GS              G        ++
Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S+F  +             T  + S +  I+   E  E    GQ + +VF QTPFYAE
Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502

Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R 
Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+
Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   L + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH+++
Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           + EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V
Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           + + +  R  Q  +A+ K +              +   V  ++  +   D+  L++  D 
Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRIIASQVDVADAGALRTFADN 796

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++  G GGG+P MA
Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851

Query: 876 QSGGPNGNKADQAIAGVA 893
            +GG + +K  + +A VA
Sbjct: 852 MAGGSDASKIAELLAAVA 869


>gi|148243479|ref|YP_001228636.1| alanyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|147851789|emb|CAK29283.1| Alanyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 915

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 347/915 (37%), Positives = 520/915 (56%), Gaps = 69/915 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63
           + IR  FLEF++  GH+ +PS+SLIP  DPT++ T +GM+PFK +F GQ E+P  +A T+
Sbjct: 45  AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 102

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD +
Sbjct: 103 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPK 158

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    +
Sbjct: 159 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL 218

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   NN
Sbjct: 219 -GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNN 277

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   LI+ +  + G+ Y   ++    + +VI DH R+ + LI DG+  +N GRGY+
Sbjct: 278 YETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 337

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR + + RLLG ++P ++ +  A    M +AYP+L + + LI   L+ E+ RF +
Sbjct: 338 LRRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLE 397

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ ++I    GL+ +D+  F  
Sbjct: 398 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEA 454

Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           A+E QR RA+A ++ +     G  E++   L+    AT F GY+ L              
Sbjct: 455 AMEAQRQRAKAAAVSIDLTLQGAIEQMAADLE----ATAFRGYEAL-------------- 496

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           + P         S V A+V  GE  + A +G  V++V D TPFY E GGQ+GD G   G 
Sbjct: 497 EHP---------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQ 547

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + + I  V ++ + + VHH  +ERG L     +   +D   RR+   +H+ATHLL  AL
Sbjct: 548 DLIVSIESVNRQRD-VSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAAL 606

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++ S +SQ GS +  D LRFD    + +T AEL+ +E  +N  I +   +  + M  E
Sbjct: 607 KQVVDSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIE 666

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IVSE+ + 
Sbjct: 667 AAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSEAGVA 721

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA+ G    ++L  +D  +K L+   KV    +  RV  + EE +      A  
Sbjct: 722 SGIRRIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAA 781

Query: 778 KLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGIS 831
           + +L              I +   +   +  VD   L+S    L  ++  G  ++L G+ 
Sbjct: 782 RSELAVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLP 841

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLGG------GGGGGRPHMAQSGGPNGN 883
                  +I+V       F    +A+   + + +GG      GGGGGRP++AQ+GG +G 
Sbjct: 842 DPSDLGKVILVAA-----FGKAVVAKGQKAGQFIGGVAKLCGGGGGGRPNLAQAGGRDGA 896

Query: 884 KADQAIAGVASFLKK 898
             D A+    S L++
Sbjct: 897 ALDGALEQAKSSLQQ 911


>gi|311739532|ref|ZP_07713367.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305348|gb|EFQ81416.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 897

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 334/922 (36%), Positives = 496/922 (53%), Gaps = 66/922 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 9   IRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKGLATSI 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   D     
Sbjct: 68  QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVDEGGFG 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 124 LDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 183

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFMQ E      + N +    LPK +IDTG+G+ER+
Sbjct: 184 GPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGLGIERV 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADG 289
           A +LQ+  N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   LI DG
Sbjct: 243 ACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMMLILDG 302

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +  I  
Sbjct: 303 VTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNRERILR 362

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQD 403
              +E++ F KTL+ G  L D  +  L         ++L G+ AF+L+DT+G P+D+  +
Sbjct: 363 VAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPIDLTLE 422

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F G++ L
Sbjct: 423 MAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGFEEL 481

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                   D +V+                  +V+ GE V++   G++VEV+ D TP YAE
Sbjct: 482 ------TSDARVI-----------------GLVRGGEKVDQVREGEQVEVILDHTPLYAE 518

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ+ D G  +     L++ DVQK  + ++VH A V  G L   MS+   +D Q R   
Sbjct: 519 AGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQWRHGA 578

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I    N  I
Sbjct: 579 TQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALITNQAI 638

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+S+ 
Sbjct: 639 DSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTHVASSA 694

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  R+ ++
Sbjct: 695 EIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERIAQL 754

Query: 764 WEEYRKLQL-IHAKRKLQLNVEDLSCHKIA-DVNFMSHII----SEVDSKELKSVMDALQ 817
            E+ +  +  I   RK QL          A D+N    I           +L++V   L+
Sbjct: 755 SEKLKAAEKEIETLRKQQLAARASEFVGAAKDINGFKVIALTLPEGTTGGDLRTVATDLR 814

Query: 818 KKI-QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++ +   ++++G   + K   +   T+  + R   + D+ +   + +  G GGG+P MA
Sbjct: 815 NRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGGKPDMA 873

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q  G     A++  A V   L+
Sbjct: 874 QGSGSTAAGAERGFAAVKDMLE 895


>gi|255325071|ref|ZP_05366177.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297636|gb|EET76947.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 894

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 336/924 (36%), Positives = 497/924 (53%), Gaps = 70/924 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKGLATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   D     
Sbjct: 65  QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVDEGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFMQ E      + N +    LPK +IDTG+G+ER+
Sbjct: 181 GPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGLGIERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADG 289
           A +LQ+  N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   LI DG
Sbjct: 240 ACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMMLILDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +  I  
Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNRERILR 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQD 403
              +E++ F KTL+ G  L D  +  L         ++L G+ AF+L+DT+G P+D+  +
Sbjct: 360 VAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPIDLTLE 419

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F G++ L
Sbjct: 420 MAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGFEEL 478

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                   D +V+                  +V+ GE V++   G++VEV+ D TP YAE
Sbjct: 479 ------TSDARVI-----------------GLVRGGEKVDQVREGEQVEVILDHTPLYAE 515

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ+ D G  +     L++ DVQK  + ++VH A V  G L   MS+   +D Q R   
Sbjct: 516 AGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQWRHGA 575

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I    N  I
Sbjct: 576 TQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALITNQAI 635

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV S+ 
Sbjct: 636 DSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTHVGSSA 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  R+ ++
Sbjct: 692 EIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERIAQL 751

Query: 764 WEEYRKLQL-IHAKRKLQLNV---EDLSCHKIADVNFMSHII----SEVDSKELKSVMDA 815
            E+ +  +  I   RK QL     E +S  K  DVN    I           +L++V   
Sbjct: 752 SEKLKAAEKEIETLRKQQLAARASEFVSAAK--DVNGFKVIALTLPEGTTGGDLRTVATD 809

Query: 816 LQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           L+ ++ +   ++++G   + K   +   T+  + R   + D+ +   + +  G GGG+P 
Sbjct: 810 LRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGGKPD 868

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ  G     A++    V   L+
Sbjct: 869 MAQGSGSTAAGAERGFEAVKDMLE 892


>gi|260578810|ref|ZP_05846717.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603108|gb|EEW16378.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 887

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 333/923 (36%), Positives = 490/923 (53%), Gaps = 74/923 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F+E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++    T++
Sbjct: 6   IRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   +     
Sbjct: 65  QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTDPVEEGGLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TV+ +D+EA ++W K  G+   KI R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTG 227
           G       P   +EG       RYIEIWNLVFM+ E      + N +    LPK +IDTG
Sbjct: 181 G-------PEHGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285
           +G+ER+A +LQ+  N Y+ DL + +I  +++VTG KY  +  N V  RVI DH R+   L
Sbjct: 234 LGIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLML 293

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+ P NEGRGY+LRR++RR +  ARLLG T   +   +  +   M  +YPE+ +   
Sbjct: 294 MLDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYE 353

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQ 402
            I     +E++ F KTL+ G  + D   +H  K+   + + GDVAF L+DTHG P+D+ Q
Sbjct: 354 RIRAVALAEEKSFLKTLESGSQMFDN-WAHGAKERGEDTVPGDVAFSLHDTHGFPIDLTQ 412

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL  ++I  F+  + EQ++RA+A +     G  ++  +        T F GY+ 
Sbjct: 413 EMAAEAGLK-VEIDGFHDLMAEQKARAKADNNAKKLGHVDQTIYRPFVDNQPTVFTGYEN 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L       ++  VL                  I++ G +VE A  G  V+V+ D+TPFYA
Sbjct: 472 L------ADEGSVL-----------------GIIRDGALVETASEGAAVQVILDRTPFYA 508

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAGGQ+ D G         ++ DVQK  + ++VHH  V  G L     +  T+D   R Q
Sbjct: 509 EAGGQMADRGEMTTTSGSARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQ 568

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HS THL+H AL  +LG    Q GS   P  LRFD  + + +T  +L  IE+  N  
Sbjct: 569 ARQAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTENQLNQIEEIANGA 628

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGG HV  +
Sbjct: 629 VDSDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHS 684

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++  + ++ ESS+ +G+RRIEA TG  +   L  +   +  LA+ LK     +  R++ 
Sbjct: 685 SQVGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVAGLATSLKTPSEELPERIDA 744

Query: 763 IWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSV-MDA 815
           +  + +       QL   + + Q+         I +V  ++  + E V + +L+++ MDA
Sbjct: 745 LTAKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAERLPEGVAAGDLRTLAMDA 804

Query: 816 LQK-KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
             +   +  +++   +  EK   V       +     A +L +   + +  G GGG+P M
Sbjct: 805 KNRLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKAFGEKV-SGRGGGKPAM 863

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ  G +       I  V S L+
Sbjct: 864 AQGSGSDAAGIPAGIEAVKSALR 886


>gi|300934543|ref|ZP_07149799.1| alanyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 887

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 318/874 (36%), Positives = 465/874 (53%), Gaps = 74/874 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F++ F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   T++QK
Sbjct: 6   IRERFIKHFTNAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFATATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LL        F LD
Sbjct: 65  CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIKHAWALLINSVADGGFGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI++D+G 
Sbjct: 121 PDRLWVTVYTDDDEAAEIWEKKVGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDRG- 179

Query: 182 CIPGGLPGSSEEG------ERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMG 229
                 P   +EG       RYIEIWNLVFM+ E      + N +    LPK +IDTGMG
Sbjct: 180 ------PEHGKEGGPIVDDTRYIEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIA 287
           +ER+A +LQ+  N Y+ DL + +I  +E++TG  Y  N+   V  RVI DH R+   L+ 
Sbjct: 234 VERVACILQDVENVYETDLLRPVIDEAERLTGATYGDNHTDNVRFRVIADHCRTGLMLML 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGY+LRR++RR +  ARLLG T   M  L+  +   M  +YPE+      I
Sbjct: 294 DGVTPGNEGRGYILRRLLRRIIRSARLLGATGTTMERLMDTVRQTMTPSYPEIADNWERI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
                 E++ F KTL+ G  L +   +    +   +++G  AF L+DTHG P D+  ++ 
Sbjct: 354 RSVAVGEEKAFLKTLESGSQLFENAAAQAKSEGKSVVDGATAFSLHDTHGFPFDLTVEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+  +D   F++ + EQ++RA+A +     G  ++  +        T F GY  +  
Sbjct: 414 NEAGMT-VDEAGFHELMAEQKARAKADNNAKKMGHADQTIYRPFVDNHPTAFTGYTHI-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                ED                 S V  I+++G++V+   +G + +++ D+TPFYAEAG
Sbjct: 471 -----EDE----------------SAVLGIIKEGQLVDRVAAGDQAQIIVDRTPFYAEAG 509

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G   G+     +TDVQK  + ++VH A V  G L     L  ++D   R Q   
Sbjct: 510 GQMADRGTFRGESGAADVTDVQKVGKKVWVHFATVTGGELAVGQKLTASVDDAWRHQARQ 569

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  +LG    Q GS   P  LRFD  +   +T+ +L  IED  N  +  
Sbjct: 570 AHSGTHLIHAALRDVLGPTAVQAGSMNRPGYLRFDFQYGDQLTAEQLSRIEDIANAAVDS 629

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGG HV  + +I
Sbjct: 630 DYKVNTIETSLEEARAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGIHVEHSSQI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----- 760
             + ++ ESS+ +G+RRIEA TG  +   L G    +  LA+ LK     +  R+     
Sbjct: 686 GPIAVLGESSVGSGVRRIEAYTGMDSFRFLSGGKNVVADLAANLKTPSEELPERIDALTA 745

Query: 761 -----EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
                E+  ++ R  QL+     L    E +   K+  V  +   +S  D + + +  DA
Sbjct: 746 KLKAAEKQIQQMRNQQLLAGVGDLVAKAETIGGIKVVAVQ-LPEGVSAGDVRTMAT--DA 802

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
             +      ++    S + K   +  VT+  +D+
Sbjct: 803 KARFGSDAAVVFFTASDDGKVPFVAAVTDAAVDK 836


>gi|288801454|ref|ZP_06406907.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331665|gb|EFC70150.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 872

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 321/915 (35%), Positives = 504/915 (55%), Gaps = 77/915 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR ++ +FF   GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +    
Sbjct: 3   ANEIRESYKQFFASKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRRAD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     LD +
Sbjct: 63  SQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAIDYAWEYLVDVLHLDPK 122

Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            LY+TV++         D++A   W+K   L  D II    +DNFW M +TGPCGPCSEI
Sbjct: 123 DLYVTVFEGSKEDNIARDDDAASFWRK--HLPEDHIINGNKHDNFWEMGDTGPCGPCSEI 180

Query: 176 FFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
             D    + +    G    +++  + IEIWN+VFMQF +++      L    IDTGMG E
Sbjct: 181 HLDSRTPEEKLKVKGSELVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLSMNVIDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+   LQ K +NYD D+F+ +I+   +++   Y  +N V+   RVI DHLR+ +F IADG
Sbjct: 241 RLVRALQGKNSNYDTDIFQPIIKEICKLSHKNYGEDNAVDVAMRVIADHLRAVAFSIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N   GYV+RRI+RRA+ YA   L   E  +  L+P L  EMG AYPEL   + LI 
Sbjct: 301 QLPSNAKAGYVIRRILRRAIRYAYTFLHQREAFIYRLIPTLIAEMGQAYPELTAQRELIG 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
             ++ E++ F +TL++G+ +L+    VL   GK E L+G  AF+L+DT+G PLD+ + ++
Sbjct: 361 RVIKEEEDSFLRTLEKGISMLNDAIEVLKKEGKSE-LDGVQAFRLFDTYGFPLDLTE-LI 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           C      ++   F++ + +Q+ RAR  ++   +      W  L    G  QF+GYD    
Sbjct: 419 CREHQITVNAEQFDEEMRKQKERARNAAVVESTD-----WVELAA--GEQQFVGYDYT-- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                   +  CQ                I++  ++ ++       E+V + TPFY E G
Sbjct: 470 --------EYECQ----------------ILRYRQVTQK--KNTYFELVLNNTPFYGEMG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  + +   ++I D  K+  G  +H  IV+      + S +  +D  NR   + 
Sbjct: 504 GQVGDKGVLVNEDETIEIIDT-KRENGQSIH--IVKTLPKDVKASFMACVDTDNRNASAA 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHL+ +AL  +LG HV Q GS ++ + LRFD +H + +T  +L+ +E  VN +I +
Sbjct: 561 NHTATHLVDYALKQVLGDHVEQKGSYVSTESLRFDFSHFQKVTDEQLREVERLVNQLIRE 620

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + P+   R    E+A   GA ++ G KY D+VRVV          S   CGG H +STG 
Sbjct: 621 DYPMDEHRDTPIEEAREMGAVSIFGEKYGDKVRVVRFG------PSCEFCGGIHATSTGR 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + +  IV+E+S+ AG+RRIEAITG+     +   ++ ++++ +    ++ ++ G VE+  
Sbjct: 675 LGMFKIVTETSVAAGVRRIEAITGENCEELVYSLEDTIRAVKALFNNTK-DLKGAVEKFI 733

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI-----ISEVDSKELKSVMDALQKK 819
           EE   ++    K K Q NVE L    +      + I     +  +D+ + K ++  +++ 
Sbjct: 734 EENEAMKKEVEKFKAQ-NVERLKEFLLKGAKQQNGITIVTGVLPIDASDAKDLVFKVREA 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             S ++ ++G +   K  + +++++DL+     NA  + R +AK++  GGGGG+PH A +
Sbjct: 793 NPSHLLCVIGTTAGNKPLLSVMLSDDLVKEHNLNAGAMIREAAKLI-KGGGGGQPHYASA 851

Query: 878 GGPNGNKADQAIAGV 892
           GG +    + AI  V
Sbjct: 852 GGKDLEGLNAAIEKV 866


>gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 978

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 335/918 (36%), Positives = 506/918 (55%), Gaps = 91/918 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           SIR  FLEFF   GH++LPS+SL+P  DPT++ T +GM+ FK IF G+        TT Q
Sbjct: 82  SIRRRFLEFFASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCATTAQ 140

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           +C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L   R+
Sbjct: 141 RCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIRWAWELSTIEFGLPANRV 196

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++++Y++D+EAF++WK   G+  ++I R+   DNFW+   TGPCGPCSE+++D       
Sbjct: 197 WVSIYEDDDEAFEIWKNEVGVPVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPERGS 256

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM---SIDTGMGLERMATVLQEKTN 242
                  +  R+IE +NLVFMQ+   NK E  +L  +   +IDTG+GLER+A +LQ+  N
Sbjct: 257 DDDVDLGDDTRFIEFYNLVFMQY---NKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N GRGY
Sbjct: 314 NYETDLIYPIIAKISELANISYDSANEKAKTSLKVIADHIRAVVYLISDGVSPSNIGRGY 373

Query: 300 VLRRIMRRAMCYARLLGYTE----PLMMHLLPALCTEM--GSAYPE---LIQAKLLIEET 350
           V+RR++RRA+   + LG  E     L    LPA+  ++   S Y +    ++A  +IEE 
Sbjct: 374 VVRRLIRRAVRKGKSLGINEYRNGNLKGAFLPAVAEKVIELSTYIDSDVKLKAPRIIEE- 432

Query: 351 LRSEDERFGKTLDRGLVLLD-------GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +R E+  F KTL+RG  LLD        +         L+G  AF LYDT+G P++I  +
Sbjct: 433 IRQEELHFKKTLERGEKLLDQKLNDALSIADKTKNTPYLDGKDAFLLYDTYGFPVEITAE 492

Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +   RG++ ID+  F   +E QR +++ AH++      T +    + +    T+F+GYD 
Sbjct: 493 VAEERGVS-IDMKGFEVEMENQRRQSQAAHNV---VKLTVEDDADITKNIADTEFLGYDS 548

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                          ++VK+++  G+ V +   G KVE++ D+TPFYA
Sbjct: 549 L-----------------------SARAVVKSLLVDGKPVIKVSEGSKVEILLDRTPFYA 585

Query: 523 EAGGQLGDTGCAI--GDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           E+GGQ+ D G      DG +    ++++DVQK  + IFVH   V+ G L     +   +D
Sbjct: 586 ESGGQIADHGFLYVNSDGNQENAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEAAVD 644

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   ELK IE
Sbjct: 645 ADLRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNINRSLHDNELKEIE 704

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCG 695
             +N  I     + T+++   DA  +GA A+ G KY++  VRVV V     GV S  LCG
Sbjct: 705 RLINRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVP----GV-SMELCG 759

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV    
Sbjct: 760 GTHVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEK 819

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIA-------DVNFMSHIISEVDSK 807
           V+  VE + +E R  +   +  + +  V   S   K A        +  +   + + D+ 
Sbjct: 820 VIETVENLLKELRAAKKEASDLRSKAAVYKASVISKNAFTVGTSQTIRVLVDSMDDTDAD 879

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--- 864
            LKS  + L   ++  + +++G S EK    L+            V L   + K +G   
Sbjct: 880 SLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSP-----GVVSLGVQAGKFIGPIA 934

Query: 865 ---GGGGGGRPHMAQSGG 879
              GGGGGG+P+ AQ+GG
Sbjct: 935 KLCGGGGGGKPNFAQAGG 952


>gi|19552844|ref|NP_600846.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390515|ref|YP_225917.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|24418687|sp|Q8NQ22|SYA_CORGL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21324401|dbj|BAB99025.1| Alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325852|emb|CAF21641.1| ALANYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 888

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 329/902 (36%), Positives = 497/902 (55%), Gaps = 64/902 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F   GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++    T++
Sbjct: 6   IRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       F 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVADGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+K  G+ +++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAAEIWEKKIGVPSERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233
           GE   G   G   +  RY+EIWNLVFM+ E  Q   ++ F     LPK +IDTGMG+ER+
Sbjct: 181 GEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFDILGDLPKKNIDTGMGVERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ+  N Y+ DL + +I  +E +TG KY  +N   +  RVI DH R+   LI DG+ 
Sbjct: 240 ACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLILDGVT 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  I    
Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRERIMRVA 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++    G
Sbjct: 360 VTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEMAAEAG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  F+  + EQRSRA+A S     G T+   +        T F G++ L      
Sbjct: 420 LE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELDSQ--- 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GGQLG
Sbjct: 476 --------------------SKVLGLLSDGAKISEATEGQEVEVILDQSPLYAESGGQLG 515

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G   +GD + L + DVQK  + ++VH A+V  G L     +V ++D Q R      H+
Sbjct: 516 DRGQILLGDTV-LDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAARQAHT 574

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG    Q GS   P  LRFD  +++ +T A+++ I+   N+ +  +  
Sbjct: 575 ATHLIHAALRQVLGPTALQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVDTDWA 634

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+ + +I  +
Sbjct: 635 VNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQIGPV 690

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767
            ++ ESSI +G+RRIEA +G  + ++L  +    + LAS LK     +  RV ++ ++  
Sbjct: 691 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLVDKLK 750

Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI- 820
              ++++ +H +++L     DL  +  +I  V   +  +    ++ +L+++   L+ K+ 
Sbjct: 751 AAEKEIEALH-RQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKDKLG 809

Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + G++++   +  K   V+      +    ++ +L +L    +  G GGG+  +AQ  G
Sbjct: 810 DREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQGSG 868

Query: 880 PN 881
            N
Sbjct: 869 AN 870


>gi|227503536|ref|ZP_03933585.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075572|gb|EEI13535.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 896

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 334/923 (36%), Positives = 504/923 (54%), Gaps = 68/923 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F  +GHE++PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 8   IRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQGLATSI 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW+LLTK+     F 
Sbjct: 67  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVADGGFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 123 LDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSEIYYDR 182

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFMQ E+     K +  I   LPK +IDTG+G+ER+
Sbjct: 183 GSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFKIVGELPKKNIDTGLGIERV 241

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNIVNHRVIVDHLRSSSFLIAD 288
           A +LQ   N Y+ DL + +I  +E++TG  Y     + +NI   RV+ DH R+   LI D
Sbjct: 242 ACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQQDNI-RFRVVADHSRTGMMLILD 300

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +  I 
Sbjct: 301 GVTPGNEGRGYILRRLLRRIIRSAKLLGAEGATMERFMNTVMDTMTPSYPEIADNRERIL 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDE-ILNGDVAFKLYDTHGLPLDIMQ 402
               +E++ F KTL+ G  L D  +     +H  K + +L+GD AF+L+DT+G P+D+  
Sbjct: 361 RVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPIDLTL 420

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F GY+ 
Sbjct: 421 EMAQEAGLD-VDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGYE- 478

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                               +L +G + I   +V+ G+ V E   G +VEV+ D +P YA
Sbjct: 479 --------------------ELVSGANVI--GLVKDGQKVNEVHEGDEVEVILDHSPLYA 516

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G        L++ DVQK  + ++VH A V  G L   MS+  ++D + R  
Sbjct: 517 ESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEKWRHG 576

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +++ I    N  
Sbjct: 577 ATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALITNQA 636

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I  N+ V T   + E+A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV S+
Sbjct: 637 IDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTHVGSS 692

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV    +  R+ +
Sbjct: 693 AEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPERISQ 752

Query: 763 IWEEYRKLQL-IHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEV----DSKELKSVMDAL 816
           + E  +  +  I   RK QL          A +VN +  I  ++       +L++V   +
Sbjct: 753 LSERLKAAEKEIEGLRKAQLTARASEIIDSATEVNGIKTITLQLPDGTSGGDLRTVATDI 812

Query: 817 QKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + +++  + +I+L  + K K   +     + + +   A D+ +   + +  G GGG+P M
Sbjct: 813 RNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYV-NGRGGGKPDM 871

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ  G     A +    V   L+
Sbjct: 872 AQGSGTAPEGAQRGFEAVKDLLQ 894


>gi|227495468|ref|ZP_03925784.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831015|gb|EEH63398.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 895

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 324/930 (34%), Positives = 493/930 (53%), Gaps = 75/930 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   + E+FQ+NGHE+ PS  L+   DP+++FT +GMVPF     G E   +    +
Sbjct: 3   TAEIAHRWKEYFQRNGHEIRPSVPLV-SPDPSILFTIAGMVPFIPYIIGTEPAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND++NVGRT RH TFF+M GNFSFG YFKE AI  AW+LLT       +
Sbjct: 62  VQKCLRT----NDIENVGRTTRHGTFFQMNGNFSFGDYFKEGAIDFAWELLTGSQETGHY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T+++ED E++ +  +  GL    I+R+  ++NFW   + GP GPC+E  +D
Sbjct: 118 GLDGDRLWVTLWEEDAESYDVLTRKIGLDPKHIVRLPRHENFWDTGQPGPAGPCAEWHYD 177

Query: 179 QGECI-PGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231
           +G    P  + G+ + G +RY+EIWNLVF Q+   E   K    +  L   +IDTG GLE
Sbjct: 178 RGPSYGPEAVGGNVDPGGDRYLEIWNLVFDQYLRGEGSGKDYPLLGELDAKAIDTGAGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIA 287
           R+A V+Q K N Y+ID  + +I A+E ++G  Y G     + V  R++ DH+RSS  LI 
Sbjct: 238 RLAFVMQNKPNMYEIDEVRPVISAAEMMSGRTYLGGGDPEDDVRMRIVADHIRSSMMLIN 297

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG++P N+GRGYVLRR++RRA+   RLLG     +  L+P     M ++YP+L      I
Sbjct: 298 DGVVPGNDGRGYVLRRLIRRAVRSMRLLGVDTATLPTLMPVSRDAMKASYPDLETNWERI 357

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            +   +E+E F +TL  G  +LD  ++     G    L+G+ AF+L+DT+G P+D+  ++
Sbjct: 358 ADVAYAEEETFRRTLSAGTTILDTAVAKAKAAGSATKLSGEEAFQLHDTYGFPIDLTLEM 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDL 462
              +G+  +D   F + + EQ++RAR  +L   +G  + +I+   + + G  + F+GY  
Sbjct: 418 AKEQGV-DVDEARFRELMLEQKTRARQDALAKKAGHVDSRIYHEFQNQLGGGSYFLGY-- 474

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                  +   SI+  IV +G  V        +EV+ D+TPF+A
Sbjct: 475 ---------------------TESETESIISGIVSEGAAVPALTGPADIEVILDKTPFWA 513

Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQL D G      G  ++I DVQ   +G+ VH   +  G L    + V  I    R 
Sbjct: 514 EMGGQLADHGTIRTTGGAIVEIDDVQAPIKGLTVHRGRLVEGTLALGETAVAKICTDRRL 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H+ATH++H  L   +G   +Q GS  +P  LRFD  H+  +    L  +E  VN 
Sbjct: 574 AIARAHTATHMVHKGLHEFIGEGATQAGSENSPSRLRFDFRHTSAVPVDVLGELEARVNQ 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +A NL V   IMN +DA A GA AL G KY + VRVV++    G   S  LC GTHV +
Sbjct: 634 QLANNLTVTDTIMNIDDAKAMGAMALFGEKYGNEVRVVNI----GDGWSVELCAGTHVPT 689

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  + ++ E+SI +G+RRI+A+ G  A +H   +   +  L   +      + G+VE
Sbjct: 690 TGHIGRVALLGEASIGSGVRRIDALVGDGAYAHQAKEHALVSQLTGLIGGKSDELPGKVE 749

Query: 762 EIWEEYR----------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE-LK 810
            + ++ +          + Q++    +L   VE L       VN     + E  S E L+
Sbjct: 750 SLLKKLKDAEKQIAKLGEAQMLARAAELATQVERLGAFDAVIVN-----LGEAASAEGLR 804

Query: 811 S-VMDALQKKIQSGIIMLVGISKEKKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGG 867
           S V+D   +  ++  +++ GI        ++V T +        A  L RL+++ L  GG
Sbjct: 805 SLVLDVRARLGEANPVVVAGIGVISDKPQVVVATNEAARGAGAKAGALVRLASQTL-QGG 863

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGGR  +AQ GG N     +A+  V   L+
Sbjct: 864 GGGRDDVAQGGGQNPAAVPEAVEVVKQALR 893


>gi|256825088|ref|YP_003149048.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688481|gb|ACV06283.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
          Length = 893

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 316/875 (36%), Positives = 472/875 (53%), Gaps = 76/875 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L +F+   H ++PS+ LI  +DP L+F N+GMVPFK    GQ+ P +Q  T+
Sbjct: 3   TAEIRRRWLAYFEGKDHAVVPSAPLI-HDDPNLLFVNAGMVPFKPYLLGQQTPPWQRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFK  AI +AW+ LT        
Sbjct: 62  VQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKAGAISMAWEFLTTPEAGGGL 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L +  L+ TVY++D+EAF LW +++ L A++I+R    DN+WSM   GP GP SEIF D
Sbjct: 118 GLRKDDLWATVYNDDDEAFDLWLELTDLPAERIVRRDEEDNYWSMGVPGPGGPSSEIFLD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLE 231
           +G E    G P   E+  R++EIWNLVFMQ E    ++K +  I   LP+ +IDTGMGLE
Sbjct: 178 RGAEYGRDGGPAVDED--RFMEIWNLVFMQHELSAVRSKSDFDIAGNLPQQNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLRS 281
           R+A+VLQ   N Y+ID    ++  + ++ G++Y  ++           V+ RV+ DH+RS
Sbjct: 236 RIASVLQGVDNLYEIDQVYPVLDRAAEMAGVEYGASSGHIASESHPHDVHLRVVADHVRS 295

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
              LI DG++P NEGRGYVLRR++RRA+   RLLG T+P +  LLP     MG +YPEL+
Sbjct: 296 GLMLIGDGVVPGNEGRGYVLRRMLRRAVRSMRLLGVTDPALPELLPISRDLMGESYPELV 355

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPL 398
                I +   +E++ F +TL+ G  + D V +   KD   ++  GD AF L+DT+G P+
Sbjct: 356 SGWDRISQIAYAEEDAFRRTLEAGTTIFD-VAAGQTKDAGQKVFPGDKAFALHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQF 457
           D+  ++   +GLA +D   F   + EQR RA+A +    SG    ++W  L+   GAT +
Sbjct: 415 DLTLEMAAEQGLA-VDEAGFRGLMTEQRERAKADARAKKSGHANTEVWRELR-SLGATDW 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
             Y  L                     T+G    V  +V+ GE V     G+  +VV D 
Sbjct: 473 RAYTDL--------------------ATDGR---VVGLVRDGERVGGLSQGETGQVVLDT 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE+GGQ+ D G    DG RL++ DVQ+  +G+  H   V  G +         +D 
Sbjct: 510 TSFYAESGGQVADAGIITLDGARLEVVDVQRPVKGLVAHTVKVASGEVTEGADARAEVDP 569

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R + +  HS TH++H AL  +LG    Q+GS   P  LR D   +  + +A    +E+
Sbjct: 570 TWRIEAAQAHSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWNGALDAATRSELEE 629

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  +  +LPV    M+   A   GA AL G  Y++ VRV+ +    GG  S  LCGGT
Sbjct: 630 VANLAVRDDLPVSAHWMSLPAAREWGALALFGETYDEDVRVIEI----GGPWSRELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL-------- 749
           HV  + +I  L +  ESS+ +G RR+EA  G  A  HL  +   +  L++          
Sbjct: 686 HVQHSSQIGALTLTGESSVGSGSRRLEAFVGLNALRHLATERALVAELSTIAGVQPTELK 745

Query: 750 -KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
            KVSQ  +V R++E   E   ++   A+      V++    ++  +  ++  + EVD  +
Sbjct: 746 DKVSQ--LVARLKETEREITAMKRQQAQGATAGLVDE--AEQVGGIRLVTKELPEVDGGD 801

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           L++V   ++ +       +  +S      V++V T
Sbjct: 802 LRTVAQDVRGRFGDAAAAVALVSTAGAKPVVVVAT 836


>gi|255072777|ref|XP_002500063.1| predicted protein [Micromonas sp. RCC299]
 gi|226515325|gb|ACO61321.1| predicted protein [Micromonas sp. RCC299]
          Length = 923

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 315/785 (40%), Positives = 450/785 (57%), Gaps = 53/785 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FLEF+++ GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ +      TT 
Sbjct: 30  SGIRRRFLEFYEQRGHARLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQAERAVPCATTT 88

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L TKE+ LD+ R
Sbjct: 89  QKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQYAWELATKEYGLDETR 144

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           +Y++V+ ED+EA+ +W+ + G+  ++I R+   DNFW+   TGPCGPCSE+++D      
Sbjct: 145 IYVSVFREDDEAYAIWRDVVGVPEERIKRMDEADNFWAAGPTGPCGPCSELYWDF-HPER 203

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFM+  +    +   L   +IDTGMGLERMA +LQ K NNY
Sbjct: 204 GAEGADLEDDSRFIEFYNLVFMEMNRDASGKTAPLKNKNIDTGMGLERMAQILQGKPNNY 263

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL + +I  +  + G+ Y+  +       +VI DH R+ ++L++DG+LP+N GRGY++
Sbjct: 264 ETDLIRPIIDKAASMAGISYDDADDATKLKLKVIGDHTRAVAYLVSDGVLPSNVGRGYIV 323

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEM-----GSAYPELIQAKLLIEETLRSEDE 356
           RR++RR +   RLLG   P           E+     G   PE+      I E    E+ 
Sbjct: 324 RRLLRRVVRCGRLLGVKAPEGAQAFTPTIAEVAVGMSGDCDPEVANRAPKIYEEFEREEL 383

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           RF KTL RG  +L  +++     +     L+GD AF LYDT+G PLDI  D+    G+A 
Sbjct: 384 RFAKTLGRGEEILADMIAAAKAKDAEAPELSGDDAFTLYDTYGFPLDITTDVATEEGVA- 442

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKE 471
           +D+  F  A+E  R+ +R   + +   T   +  ++ ++ G  T+F GY    GS     
Sbjct: 443 VDVEGFEAAMEIARTLSRDARVTVDV-TAGDLLATIADELGEPTRFTGY----GS----- 492

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
               L ++         S  V+AIV+ GE V+ A +G+ VEVV D TPFYAE GGQ+GD 
Sbjct: 493 ----LVEQ---------SVTVRAIVRAGERVDSAAAGETVEVVLDATPFYAEGGGQVGDE 539

Query: 532 G-CAIGDGIRLQITDVQKKAEG-IFVHHAIV---ERGILRTEMSLVLTIDYQNRRQLSIN 586
           G   + +G+ L + D +K A G +FVH   V     G +    ++   +D ++RR+   N
Sbjct: 540 GEIQLANGVVLSVRDCRKAAGGRVFVHVCEVTGDASGSVSVGDAVTAAVDAESRRRAKAN 599

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  ++G  VSQ GS +  + LRFD       T A+L+ IE  VN  I   
Sbjct: 600 HTATHLLQSALKRVVGEDVSQAGSLVNTERLRFDFNAPAGPTPAQLEEIEALVNGWIGDA 659

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             +V + M   +A + GA A+ G KY D VRVV V        S  LCGGTHV++T EI 
Sbjct: 660 TNLVAQEMPIAEAKSRGATAMFGEKYGDVVRVVDVP-----GVSMELCGGTHVANTAEIG 714

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              IVSE+ I AG+RRIEA++G      L  ++  ++ LA  L+V    + GRV  + ++
Sbjct: 715 GFKIVSEAGIAAGVRRIEAVSGPGVVELLNQREGVVRELAGALRVPPEEIAGRVTSLMDD 774

Query: 767 YRKLQ 771
            R  Q
Sbjct: 775 LRAAQ 779


>gi|146299654|ref|YP_001194245.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|205830093|sp|A5FIP9|SYA_FLAJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146154072|gb|ABQ04926.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 338/931 (36%), Positives = 503/931 (54%), Gaps = 97/931 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL+FF+  GH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    +   QK
Sbjct: 6   VRKQFLDFFESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSPRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + +  LY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIPKENLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V++         D+EA+ +WK +  +  D+II     DNFW M + GPCGPCSEI  D
Sbjct: 126 VSVFEGSKEDNVPFDQEAWDIWKTL--IDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               + + +  G    + +  + +EIWN VFM+F ++       LP   +DTGMG ER+ 
Sbjct: 184 LRSAEEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSS 283
             LQ KT+NYD D+F  LI+  E +TG KY  N++           +  RV+ DH+R+ +
Sbjct: 244 MALQGKTSNYDTDVFMPLIREIETITGAKYTTNDVTGISEEQNKMNIAIRVVADHVRAVA 303

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG ++PE+  
Sbjct: 304 FAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQMGDSFPEIRT 363

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K L    +R E+  F KTLD+GL+LLD V+ +   D I +G  AF+LYDT+G P+D+  
Sbjct: 364 QKALCSNVIREEENSFLKTLDQGLILLDAVILNNTGDTI-DGKKAFELYDTYGFPIDLTA 422

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL  RGL  +D   F + L+ Q+ R+RA      S  T   W  + E     +F+GYD 
Sbjct: 423 LILSERGLK-LDEEGFQEQLQLQKERSRA-----ASKVTAGDWNVIVED-DIQEFVGYDR 475

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L     + + R+V                    V+ GEI          ++VF+ TPFY 
Sbjct: 476 LSQQVKITKYRRVES------------------VKDGEI---------FQLVFNATPFYG 508

Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E+GGQ GD G     +G  + I D +K+          +   I  T  ++V   D   R 
Sbjct: 509 ESGGQTGDKGYLEAQNGDIVYIIDTKKENNQTIHLTQSLPENITGTFNAVV---DANQRA 565

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           + S NHSATHLLH  L  ILG+H+ Q GS +    LRFD +H   +T  EL  +E+ VN 
Sbjct: 566 KTSSNHSATHLLHQGLRKILGTHIEQKGSMVRNASLRFDFSHFSKVTDEELLEVENFVNA 625

Query: 642 IIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I ++LP++  R + +E A+  GA AL G KY D VR  ++++ D    S  LCGGTHV+
Sbjct: 626 RIRESLPLIEKRAIPKEQALEDGAIALFGEKYGDLVR--TIKFGD----SVELCGGTHVA 679

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T +I    IVSE ++ AGIRRIEAIT + A+ +   Q   L  +   LK +Q + V  +
Sbjct: 680 NTSDIWHFKIVSEGAVAAGIRRIEAITSEAAKEYFESQAVSLAEIKEALKNAQ-DPVKSI 738

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVD-----SKE 808
             + +E  +L     K++L+  ++D + +  AD       +N +  +  +VD     +K+
Sbjct: 739 LALQDENAQL-----KKQLEALLKDKAKNMKADLAKELQEINGVQFLAKQVDLNPEGAKD 793

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGG 866
           L   +        + + ++   + E K  +   ++++++     NA  + R   K +  G
Sbjct: 794 LAYELGG----SYNNLFVVFATAHEGKPMLTCYISKEIVASKNLNAGQVVRELGKYI-QG 848

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGGG+P  A +GG N +   +A+A    F+K
Sbjct: 849 GGGGQPFFATAGGKNVDGIGEALAKAVDFVK 879


>gi|116617672|ref|YP_818043.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272127|sp|Q03YQ2|SYA_LEUMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116096519|gb|ABJ61670.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 893

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 349/930 (37%), Positives = 513/930 (55%), Gaps = 74/930 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++SS  IR  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKDLSSAEIRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE+AI  AW+LLT   
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +LY+TVY +D+EA K+W++ + L    I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225
           FD+G          P   PG   E ERY+EIWNLVF QF       +  +   LP  +ID
Sbjct: 174 FDRGSSFQDLPDDDPEMYPGG--ENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNID 231

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEG--NNIVN--HRVIVDHLR 280
           TGMGLER+ +V Q    N+D DLF  +I+A+E+++    Y+   ++ VN   +VI DH+R
Sbjct: 232 TGMGLERVVSVFQNGRTNFDTDLFLPIIRATEKLSNQFTYDDSQDSEVNTSFKVIADHIR 291

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           + +F I DG LP+NEGRGYV+RR++RRA+ + + LG     + +L+P +   M S YPE+
Sbjct: 292 AITFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEV 351

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLP 397
                 I++T+ +E++RF  TL  GL LL+ V+      G+ +I   D AFKL DT+G P
Sbjct: 352 KANTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGAD-AFKLSDTYGFP 410

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           L++ Q+     GL  +D+  +N  L+ QR RARA               S  +  G    
Sbjct: 411 LELTQEQAEDAGLT-VDVDRYNDELQAQRVRARAAR-------------SNTKSMGVQNA 456

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +  DL   SK++   +  +     + +       V A++   ++         V+V FD 
Sbjct: 457 VLTDLRVDSKYVGWSQTEVNHAEIVAIIGEDEQGVDALLDNADV------DATVQVAFDV 510

Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           TPFYAE GGQ+ D G  +   GD I   +TDVQ    G  +H   V       +  + L 
Sbjct: 511 TPFYAEMGGQVPDFGDVLNTNGDVI-AHVTDVQTAPNGQHIHTVDVISSFTLGD-KVDLK 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D      +S NH+ATH+L  +L  +LG  V Q GS + P+ LRFD  +  P++S +L  
Sbjct: 569 VDMARHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  +N  IA+NLPV     + E A   GA A+ G KY D+VRVVS+     G  +    
Sbjct: 629 IESMMNQEIAKNLPVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753
           GGTH +ST E+ L  IVSES I AG+RRIEA+TG +A S    Q++ LK +A+ LK  + 
Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK-- 807
            +   +V ++  + R +Q  HA+  L+  + + +  +I +    VN  ++I +++     
Sbjct: 744 TDAPEKVYDLQADLRTVQR-HAE-SLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGM 801

Query: 808 -ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             L+ V D  ++   S +++L  ++ EK + ++    +       A +L +  A  + GG
Sbjct: 802 DGLRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHI-GG 860

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGGRP MAQ+GG        A A V++FL
Sbjct: 861 GGGGRPDMAQAGGKKPAGIPDAFAAVSAFL 890


>gi|325679252|ref|ZP_08158839.1| alanine--tRNA ligase [Ruminococcus albus 8]
 gi|324109038|gb|EGC03267.1| alanine--tRNA ligase [Ruminococcus albus 8]
          Length = 885

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 308/893 (34%), Positives = 478/893 (53%), Gaps = 50/893 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++++ +R ++L+FF+  G     S  L+P ND +L+   +GM P K  FTGQE P    +
Sbjct: 4   TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T RH T+FEMLGNFSFG YFK+ AI  AW+ +T    L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+++VY++D+EA K+W +  G+  D I+R+   DNFW     GPCGPCSEI+FD+GE
Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q 
Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +D+D  K +     ++ G +Y  E    V+ RVI DH+R+ +FL +DG+LP+NEGR
Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGKEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + +LLG     +  L+  +       Y EL +    I + L +E++ 
Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  T+DRG+ +LD  +  L  +    L+G+  FKL DT+G PLD+ ++IL  +GL   D 
Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLTA-DE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   +E+QR  AR      G    E+  F   +K  +T+F GYD         ED   
Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYD-------KTED--- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + ++  +    +++E A     V +V DQT FYAE+GGQ GDTG   
Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQAGDTGVIE 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               + ++ D QK   G F     V  G L    ++   +D   R     NHS  HLL  
Sbjct: 516 TATGKAEVLDTQKAVGGKFALKVKVTEGALTKGQAVTFKVDKAKRLATMRNHSCAHLLQS 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG HV Q G  +    LRFD +H + +T+ E   +E  VN  I   L +    M 
Sbjct: 576 ALRTVLGEHVHQAGQLVDSQRLRFDFSHFEAMTADEKAQVEALVNKYIFDALDITMEEMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL G KY + VRVV++  +     S   CGGTH+ +T +I L  I+SE+S
Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMG-DRANAASIEFCGGTHLDNTSKIGLFKIISENS 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIH 774
           + +G+RR+EA+TG      L    E +   A  LK++    +V R   + +E + L+   
Sbjct: 695 VASGVRRVEAVTGTGVLELLNSNIETINKAAETLKLNNPAELVSRCGAVMQEIKGLE--K 752

Query: 775 AKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +  L+  + ++    + +       V+  +  ++ V    L+ + D L+    + I+++
Sbjct: 753 ERDSLETAMANMRAKSVLENAVDVKGVSVATAQLNGVKPDVLRKMADELKAANDNVIVVM 812

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878
             ++ + K ++++   +D + +       +++ K+  L  G GGGRP  A +G
Sbjct: 813 TTVNGD-KGNIVVAAGKDAVAK--GAHAGKIAGKIAALTNGKGGGRPDSAMAG 862


>gi|308805977|ref|XP_003080300.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|122158402|sp|Q015G2|SYAP_OSTTA RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|116058760|emb|CAL54467.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 945

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 322/848 (37%), Positives = 468/848 (55%), Gaps = 68/848 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEF++  GH   PS+SL+P  DPT++ T +GM+ FK +F GQ +      TT QK
Sbjct: 67  IRRRFLEFYEARGHSRQPSASLVP-EDPTVLLTIAGMLQFKPVFMGQREREMPRATTTQK 125

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVG T RHHTFFEMLGNFSFG YFK  A + AW+L T EF L+  R++
Sbjct: 126 CVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREACEWAWELATNEFGLNPERVW 181

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP-- 184
           ++V+ ED+EAF +W+ + G+   +I R+   DNFW+   TGPCGPCSE+++D     P  
Sbjct: 182 VSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYD---FHPER 238

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      ++  R+IE +NLVFM+  +        L   +IDTGMGLERMA +LQ  +NNY
Sbjct: 239 GLDGADLDDDSRFIEFYNLVFMELNRDADGGIKPLKNKNIDTGMGLERMAQILQGVSNNY 298

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL + +I  +  + G+ Y   +       +VI DH R+ +++I+DG+  +N GRGY++
Sbjct: 299 ETDLIRPIIDKAASMAGLDYASCSATQKQQLKVIGDHTRAVTYMISDGVFASNIGRGYIV 358

Query: 302 RRIMRRAMCYARLLGYTE--------PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           RR++RR +   RLLG           P +  +  ++  E     P++++    I   L  
Sbjct: 359 RRLLRRVVRNGRLLGIKPADGQSAFTPSIAEVAISMSEECD---PQVVKNTARILAELER 415

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+  F KTL RG  +L  ++    KD    L+G  AF LYDT+G PLDI  D+    G+A
Sbjct: 416 EELSFQKTLGRGEEMLAELIEK-AKDSKSGLSGKDAFTLYDTYGFPLDITTDVASEAGIA 474

Query: 412 GIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGSKF 468
            +D+  F +A+ EQRS ++A   ++ + +G        + ++ GA ++FIGYD       
Sbjct: 475 -VDLEGFEKAMAEQRSMSQAAHQTVDVTAGNA---LAQVADELGAMSEFIGYD------- 523

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         ++++ VS+++ AIV  GE VEEA  G +V+VV D TPFYAE+GGQ+
Sbjct: 524 --------------NISSDVSNVL-AIVSGGESVEEASGGARVDVVLDVTPFYAESGGQV 568

Query: 529 GDTG-CAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           GD G     DG  L++TDVQK   G I VH A V +G ++    +   +D   RR+   N
Sbjct: 569 GDNGFLHSADGAVLKVTDVQKAGGGRIIVHSATVVKGSIKKGSQVSANVDENARRRARNN 628

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  +LG  VSQ GS    D LRFD    K +T A+L  +E  VN  I+Q+
Sbjct: 629 HTATHLLQSALKKVLGDDVSQAGSLCGFDRLRFDFNCPKAVTEAQLLEVETLVNGWISQS 688

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             +    M    A   GA  + G KY D VRVV V     G+ S  LCGGTHVS+T EI 
Sbjct: 689 ADLTAEEMPIAAAKEKGATMMFGEKYGDVVRVVDVP----GI-SMELCGGTHVSNTAEIG 743

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I+SE+ I +GIRRIEA+ G      L  +D  +K LAS L+V    +  RV  + ++
Sbjct: 744 GFKIISEAGIASGIRRIEAVAGAGVVELLQQRDAVVKQLASTLRVPPEEIASRVSGMQKD 803

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
               Q +    + +L V   +        + +   +   +  VD   LK   + L  ++ 
Sbjct: 804 LVAAQKLAESLRGELAVAKANALVSEARAVGESKVLVARLDGVDPGALKVAAENLATQLG 863

Query: 822 SGIIMLVG 829
            G  +++G
Sbjct: 864 DGAAVILG 871


>gi|169629935|ref|YP_001703584.1| alanyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|169241902|emb|CAM62930.1| Alanyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 891

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 333/928 (35%), Positives = 495/928 (53%), Gaps = 79/928 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T+VQK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYNTATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       +  D
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIRLAWTLLTNPVSEGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ TVY +D+EA  LW++++GL  D+I R    DN+WSM   GPCGPCSEI++D+G 
Sbjct: 121 PEKLWATVYLDDDEAIGLWQEVAGLPLDRIQRRGMADNYWSMGIPGPCGPCSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E+     +        LP+ +IDTGMG+ER+A
Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTSKTDFEILGPLPRQNIDTGMGVERIA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGN--NIVNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I     V    Y +GN  + V +RVI DH R+++ +I DG+ 
Sbjct: 239 CLLQGVDNVYETDLVRPVIDCVAAVAPRGYGQGNHEDDVRYRVIGDHARTAAIIIGDGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RR +   +LLG  +P+M  L+  +  EMG +YPEL+     I    
Sbjct: 299 PGNEGRGYVLRRLLRRIIRSTKLLGVEKPMMGELMAVVRDEMGPSYPELVTDFERISRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L +     +       L+G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLASGSKLFEDAADKTKTAGKSTLSGSDAFTLHDTYGFPIELTLEMAAEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ +D   F + + EQR RA+A +        +   +      G T+F G+D L  +   
Sbjct: 419 LS-VDEKGFRELMNEQRQRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDELDSA--- 474

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  I   G  V  A +G + E+V D+TP YAE+GGQ+ 
Sbjct: 475 --------------------ARILGIFVDGARVPVASAGSEAEIVLDRTPLYAESGGQIA 514

Query: 530 DTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   GDG     + +++DVQK A+ +FVH   VE G       +V ++D   R   + 
Sbjct: 515 DVGSIRGDGANATSQAKVSDVQKIAKTLFVHKVTVESGEFVEGDQVVASVDPHWRHGATQ 574

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD +    ++ A+ + +ED  N  +  
Sbjct: 575 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGALSEAQRQEVEDVANKAVEA 634

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N PV T + + + A + GA AL G  Y DRVRVV +    GG  S  LCGGTHV+ + +I
Sbjct: 635 NYPVNTFVTDLDQAKSMGAMALFGENYGDRVRVVDI----GGPFSLELCGGTHVAHSSQI 690

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + ++ ESS+ +G+RR+EA  G  A  +L  +   + +L+S LKV    V GRV  + E
Sbjct: 691 GPVTLLGESSVGSGVRRVEAYVGLDAVRYLSKERALMAALSSSLKVPSEEVPGRVATLVE 750

Query: 766 -------EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817
                  E  + +L   K  +   V++    +I  V  ++H + +   + +L+S++  ++
Sbjct: 751 RLKVAEKELEQTRLASVKASIATLVDN--AERIGSVTVVAHRLPDGTGAGDLRSLVGDIR 808

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-------GGGGG 870
            ++ S    +V +    + SV  VV+ +      A   A L A  L G       G GGG
Sbjct: 809 GRLGSD-PAVVALIAAGEGSVPFVVSVN-----QAAQDAGLRANDLVGAIGPAVDGRGGG 862

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +   AQ  G +    D A+  + + +++
Sbjct: 863 KADTAQGSGKDPAGIDAALQALRAQIRR 890


>gi|239917773|ref|YP_002957331.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|281413733|ref|ZP_06245475.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|239838980|gb|ACS30777.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
          Length = 903

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 321/874 (36%), Positives = 470/874 (53%), Gaps = 71/874 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +  FF+  GH ++PS+SL+   DP+L+FT +GMVPF   F G++ P    V +VQK
Sbjct: 6   IARRWTAFFESRGHRVVPSASLV-SPDPSLLFTVAGMVPFIPYFLGEQTPPSPRVVSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT       F LD
Sbjct: 65  CIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDGGFGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY ED+EA ++W++  G+  ++I R+  +DN+W+  + GP GPCSEIF+D+G 
Sbjct: 121 PERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLERMAT 235
              G   G + +  RYIEIWNLVFMQ+     ++K +  I   L   +IDTG+GLER+A 
Sbjct: 181 AY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELEHKNIDTGLGLERLAM 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFLI 286
           +LQ   N Y+ D  + ++  + Q+ G  Y           ++ V  R++ DH+RS+  LI
Sbjct: 240 ILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRSALMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG+ P NEGRGYVLRR++RR +   RL+G TEP+   LLP     M   YP +      
Sbjct: 300 SDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVADEFER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           I     +E++ F +T+  G   LD  +         + G  AF+L+DT+G P+++  +I 
Sbjct: 360 ISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIELTLEIA 419

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+A +D   F   + EQR RARA +    SG T+   +      G T F GY     
Sbjct: 420 EEAGVA-VDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY----- 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               +   S+V+ ++Q GE V  A +G ++E+V D TPFYAE+G
Sbjct: 474 ------------------TEHTTESVVRGLLQNGEEVPSAGAGTELELVLDATPFYAESG 515

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  DTG   GDG RL++ DVQ   +G+ VH   V  G +      +  ID Q R     
Sbjct: 516 GQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRRLDGEK 575

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  ILG   +Q+GS      LRFD   ++ +++     +ED VN  I  
Sbjct: 576 AHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAEALSAGARSEVEDVVNIAIRD 635

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V+T+ M+ E+A A GA +L G KY DRVRVV ++    G  S  LCGGTHV  T +I
Sbjct: 636 DHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEID----GAWSRELCGGTHVGRTAQI 691

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-------DEKLKSLASFLKVSQGNVVG 758
             L ++ E S+ +G RR+EA+ G  +  HL  +        E  K+ A  LK   G  + 
Sbjct: 692 GSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRIGATLD 751

Query: 759 RV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           R+   E+   E R   L     +L    +D++      V  ++H   +V   +L+S+   
Sbjct: 752 RLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSGGTSVRVLAHHAGDVAGDQLRSLALD 811

Query: 816 LQKKIQS------GIIMLVGISKEKKASVLIVVT 843
           L+ +I+S      G  +LV ++ E K   L+VV 
Sbjct: 812 LRARIESAGGNAAGTPVLVALTAEAKGRPLVVVA 845


>gi|229093459|ref|ZP_04224562.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228689930|gb|EEL43734.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 791

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 314/826 (38%), Positives = 482/826 (58%), Gaps = 59/826 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFS G YFKE AI  AW+ LT  K    D+  L +T++ EDEEAF +W +  G+  +
Sbjct: 1   MLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKE 60

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI------PGGLPGSSEEGERYIEIWNL 203
           +IIR+   +NFW + E GP GP +EIF+D+GE        P   PG   E ERY+E+WNL
Sbjct: 61  RIIRL--EENFWDIGE-GPSGPNTEIFYDRGEAYGNDFSDPELYPGG--ENERYLEVWNL 115

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           VF QF          LPK +IDTGMGLERM +++Q+   N+D DLF  +I A+E ++G K
Sbjct: 116 VFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSIVQDVPTNFDTDLFMPMIGATETISGEK 175

Query: 264 YEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP 320
           Y   ++   +  +VI DH+R+ +F + DG LP+NEGRGYVLRR++RRA+ Y++ L    P
Sbjct: 176 YRNGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRGYVLRRLLRRAVRYSKKLNINRP 235

Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380
            M  L+P +   M   YPE+++ K  I + +++E+ERF +TL  G  +L  V++   +++
Sbjct: 236 FMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKNEEERFHETLHDGEAILAEVIAKAKEEK 295

Query: 381 --ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
             +++G  AF+LYDT+G P+++ ++     G+  +D   F   +E+QR RARA    + S
Sbjct: 296 TTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT-VDHEGFENEMEKQRERARAARQDVDS 354

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
              +     L E   A++F+GY                        T    S V A+V+ 
Sbjct: 355 MQVQG--GVLGEVKVASEFVGYG-----------------------TVATESNVVALVKN 389

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GE  +    G++ +++ D TPFYAE+GGQ+ D G  + DG+++ + DVQK   G  +H  
Sbjct: 390 GEYTDSLQVGEEGQLMLDVTPFYAESGGQIADRGYLLADGVKVLVKDVQKAPNGQNLHQV 449

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +VE G L+ + ++   ID +NR  +  NH+ATHLLH AL  +LG+HV+Q GS +T + LR
Sbjct: 450 VVEEGTLKKDAAVKAIIDTKNRSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLR 509

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H   + + EL+ IE  VN+ I +++ V       E+A   GA AL G KY D VRV
Sbjct: 510 FDFSHFGQVQADELEKIERIVNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRV 569

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V V     G +S  LCGG HV +T  I +  IV+ES I AG RRIEA+TG+ A   +  Q
Sbjct: 570 VQV-----GDYSLELCGGCHVDNTASIGIFKIVAESGIGAGTRRIEAVTGKSAYELMNDQ 624

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL------NVEDLSCHKIA 792
              LK  A  +K +  +++ RV+ ++ E ++LQ  +     +L      N+ D S   + 
Sbjct: 625 VGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQKENESLAAKLSNIEAGNLTD-SVMTVD 683

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FN 851
            VN ++  ++  D   L+++MD L+ K++S +++L  ++ + K ++L  VT+DL+ + ++
Sbjct: 684 GVNVLAAKVNVADMNNLRTMMDDLKNKLESAVVVLASVN-DDKVNILAGVTKDLISQGYH 742

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A  L +  A    GGGGGGRP MAQ+GG N  + ++A+A V  ++K
Sbjct: 743 AGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQVEEALAFVQEYVK 787


>gi|305681135|ref|ZP_07403942.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659340|gb|EFM48840.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 889

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 326/903 (36%), Positives = 489/903 (54%), Gaps = 65/903 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   D     
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPIDEGGYG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  ++++TVY +D+EA  +W+ + G+ A++I R+   DNFWSM   GPCGP SEI++D+
Sbjct: 121 FDPEKIWVTVYLDDDEAANIWENVVGIPAERIQRLGMADNFWSMGIPGPCGPSSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G + +  RY+EIWNLVFM+ E      + N +    LPK +IDTGMG+ER+
Sbjct: 181 GPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGMGVERI 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ DL + +I  ++++TG  Y  N  + +  RVI DH R++  +I DG+ 
Sbjct: 240 ACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMIILDGVT 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  I+   
Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRERIQRVA 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            +E+  F KTL+ G  L +   + +   GK  +   D AF L+DT+G P+D+  ++    
Sbjct: 360 ITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGAD-AFALHDTYGFPIDLTLEMAAEA 418

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F++ + EQR+RA+A S     G T+   +        T+FIGYD L     
Sbjct: 419 GLQ-VDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDELT---- 473

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  ++  G+ V E  +G  VEV+ D + FYAEAGGQ+
Sbjct: 474 -------------------AQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEAGGQI 514

Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GD G   +GD + L++ DVQK  + ++VH A VE G      ++   +D   R      H
Sbjct: 515 GDRGTMTLGDSL-LRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAARQAH 573

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ IE   N  +  + 
Sbjct: 574 SATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVDADW 633

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T     ++A   GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + +I  
Sbjct: 634 QVNTIETTLDEAKTMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQIGP 689

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + I+ ESSI +G RRIEA +G  +  +L  +   +  LAS LK     V  R+ ++  + 
Sbjct: 690 VSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLTTKL 749

Query: 768 RKLQ-LIHAKRKLQLNVED----LSCHKIADVNFMSHIISE-VDSKELKSVMDALQKKI- 820
           ++ +  I   RK +L  +        H    +   S ++ +   + +L+++   ++  + 
Sbjct: 750 KEAEKTIENLRKAELLAQGSRLVARAHLPNGITVASAVLPDGTTAGDLRTLAADVKNHLA 809

Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            ++G+++L   + + K   ++  T++ + R  NA  + +     +  G GGG+P MAQ  
Sbjct: 810 GEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMAQGS 868

Query: 879 GPN 881
           G N
Sbjct: 869 GSN 871


>gi|306818740|ref|ZP_07452462.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307700826|ref|ZP_07637851.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|304648426|gb|EFM45729.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307613821|gb|EFN93065.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 894

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 308/880 (35%), Positives = 472/880 (53%), Gaps = 58/880 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   T+
Sbjct: 3   TAEIRQRWLDYFAANGHEVRPSVSLI-SPDPSILFTIAGMVPFIPYIVGTETAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118
           VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      ++
Sbjct: 62  VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEGKY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI +D
Sbjct: 118 GLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIHYD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G +  P G P    +G+R++E+WNLVF +F   E + K    +  L + +IDTG+GLER
Sbjct: 178 RGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           +A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI DG
Sbjct: 238 LAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIGDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I +
Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTISD 357

Query: 350 TLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  A 
Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEI-AAE 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDLLR 464
               +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY    
Sbjct: 417 AKVKVDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY---- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+Q G+ V  A +   +EV+ D+TPFYAEA
Sbjct: 473 -------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYAEA 513

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R  +
Sbjct: 514 GGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRGAI 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+ +
Sbjct: 574 ARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANERL 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V+   M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  TG
Sbjct: 634 RANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPLTG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I  L ++SE S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+  +
Sbjct: 690 AIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERITSM 749

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E  +  +    K +L   + +L     S   I    F+   +S     +L+     L+ 
Sbjct: 750 MERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQLRG 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +      ++V +  + K   ++VV  +   R   V    L
Sbjct: 810 RFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGAL 849


>gi|269977319|ref|ZP_06184292.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|269934622|gb|EEZ91183.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1]
          Length = 894

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 308/880 (35%), Positives = 472/880 (53%), Gaps = 58/880 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   T+
Sbjct: 3   TAEIRQRWLDYFAANGHEVRPSVSLI-SPDPSILFTIAGMVPFIPYIVGTETAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118
           VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      ++
Sbjct: 62  VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEGKY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI +D
Sbjct: 118 GLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIHYD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G +  P G P    +G+R++E+WNLVF +F   E + K    +  L + +IDTG+GLER
Sbjct: 178 RGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           +A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI DG
Sbjct: 238 LAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIGDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I +
Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTISD 357

Query: 350 TLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  A 
Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEI-AAE 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDLLR 464
               +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY    
Sbjct: 417 AKVKVDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY---- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+Q G+ V  A +   +EV+ D+TPFYAEA
Sbjct: 473 -------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYAEA 513

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R  +
Sbjct: 514 GGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRGAI 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+ +
Sbjct: 574 ARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANERL 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V+   M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  TG
Sbjct: 634 RANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPLTG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I  L ++SE S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+  +
Sbjct: 690 AIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERITSM 749

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E  +  +    K +L   + +L     S   I    F+   +S     +L+     L+ 
Sbjct: 750 MERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQLRG 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +      ++V +  + K   ++VV  +   R   V    L
Sbjct: 810 RFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGAL 849


>gi|164660846|ref|XP_001731546.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966]
 gi|159105446|gb|EDP44332.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966]
          Length = 963

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 335/977 (34%), Positives = 511/977 (52%), Gaps = 116/977 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
            + +R+TFL+FF++  H  +PSSS +P +DPTL+F N+GM  +K+IF G   P      +
Sbjct: 14  AAKVRSTFLDFFREKEHTFVPSSSTVPYDDPTLLFANAGMNQYKSIFLGTVDPSSEFSKL 73

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW LLT+ 
Sbjct: 74  RRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISFAWKLLTEV 132

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   RLY+T ++ D         E  ++W+K+ G+  ++I++    DNFW M  TGPC
Sbjct: 133 YGLPSDRLYVTYFEGDPKQGLEPDVETLEIWRKV-GVPDERILKGNAKDNFWEMGATGPC 191

Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI FD+     GG   +S    +    IE+WN VF+QF ++       LP   IDT
Sbjct: 192 GPCSEIHFDR----VGGRNAASLVNMDDPDVIEVWNNVFIQFNREEDGSLRPLPARHIDT 247

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMG ER+ ++LQ+K +NYD D+F  L    +++TG +     +           +RV+ D
Sbjct: 248 GMGFERLVSILQDKRSNYDTDVFMPLFSRIQELTGARPYSGKLGAEDVDGLDTAYRVVAD 307

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334
           H+R+ +F I+DG +P  +GRGYVLRRI+RR   + R   +  P+      L+P L  +MG
Sbjct: 308 HIRTLTFAISDGCIPDKDGRGYVLRRILRRGTRFVRKY-FQVPIGAFFSQLVPTLVEQMG 366

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLY 391
           S +PE+ +    ++  L  E++ F +TLDRG  L +   +     G+ ++   DV ++LY
Sbjct: 367 SFFPEITRKTKELQAILNEEEQSFARTLDRGEKLFEQYANAARTEGRTKLSGADV-WRLY 425

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+D+   +   +GL      +F+QA E ++++A +     G G  ++        
Sbjct: 426 DTYGFPVDLTSIMAEEQGL------TFDQA-EFEKAQAESKEASKGQGKQQEAL------ 472

Query: 452 YGATQFIGYDL--LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE----A 505
             A +   +DL  L     + +   V     P      + + VKAI Q+ + V +    A
Sbjct: 473 --AVKLDVHDLGHLDADASVPQTNDVFKYDTP-----SMQAHVKAIFQEHKFVSDSNSLA 525

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGI 564
            +G+   ++ DQT  YAE+GGQ  DTG  + DG    +++DVQ  + G  +H   ++ G 
Sbjct: 526 KAGEPFGILLDQTNMYAESGGQQADTGSLVIDGKAEFEVSDVQ-ASNGYVLHIGFLKYGK 584

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     +V++ D   RR L  NH+ TH+L+  L  ILG HV Q GS + P  LRFD +H 
Sbjct: 585 LSVGDQVVVSYDESRRRPLQNNHTGTHILNFGLREILGDHVDQKGSLVAPSKLRFDFSHK 644

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683
            P+  +EL+ IED  N  I +++ V  + M  E+A    G  A+ G  Y + VRVV++E+
Sbjct: 645 APVNVSELQKIEDISNSFIERDVSVYAKDMVLEEAYKIPGLRAVFGESYPNPVRVVALEF 704

Query: 684 EDGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           +   +            S   CGGTHV  TGEI  L +  ES I  GIRRI A+TG  A 
Sbjct: 705 DIDQMAKDLTNPRWRQTSIEFCGGTHVKKTGEIGRLVVTEESGIAKGIRRIVAVTGDEAV 764

Query: 733 SHLMGQDEKLKSLASFLKVSQGNV------------------VGRVEEIWEEYRKLQ--- 771
           +     DE  K L    +VS                      V R +E+   + K++   
Sbjct: 765 AVTATADEASKRLDEIDQVSDDVAKEAQLKAFSVELARMDISVVRKDELKARFTKIRKAL 824

Query: 772 --LIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGI 824
              + A+    + V   +     + N     +++ + +  +SK L+S + A+ +K+   +
Sbjct: 825 DTRLKARAAADVKVAQEAVQTYFNENPDARVYIAQLDTGANSKALQSGV-AVARKLNKSV 883

Query: 825 IMLVGISKEKKASVLI--VVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +    S  +K   L    V +D L+R  +AV   +  ++ L  G GGG+P  AQ  G  
Sbjct: 884 YLFARESGSEKTKTLYGNFVPKDELERGLDAVSWNKAVSEKL-QGRGGGKPDGAQGQG-E 941

Query: 882 GNKA--DQAIAGVASFL 896
           G KA  D+AI    SF 
Sbjct: 942 GTKADVDEAIKLAQSFF 958


>gi|172040632|ref|YP_001800346.1| alanyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|205830039|sp|B1VDL4|SYA_CORU7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171851936|emb|CAQ04912.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 888

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 331/914 (36%), Positives = 497/914 (54%), Gaps = 68/914 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F + F K+GH  +PS+SLI  +DP L+F N+GMVPFK  F GQE P +   T++QK
Sbjct: 6   IRQRFTDHFVKSGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQETPPFGTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           CVR      D+D VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT   D     L+
Sbjct: 65  CVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWTLLTNSVDDGGLGLN 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY++D+EA +LW  + GL  ++I R+   DN+W M   GPCGPCSEI++D+G 
Sbjct: 121 PDRLWVTVYEDDDEAAQLWHDLVGLPTERIQRLGMEDNYWHMGVPGPCGPCSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI-----LPKMSIDTGMGLERMAT 235
              G   G + +  R+IEIWNLVFM+FE+ + K +        LPK +IDTGMG+ER+A 
Sbjct: 181 AY-GEDGGPAVDDSRFIEIWNLVFMEFERGETKPDGSFDIVGNLPKKNIDTGMGVERLAF 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E++TG +Y  +  + +  RVI DH R++  LI DG+ P 
Sbjct: 240 LLQGVDNVYETDLLRPVIDTAEKLTGTRYGTQDKDDIRFRVIADHSRTALMLILDGVTPG 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGY+LRR++RR +  ARLLG    ++  LL  +   M  +YPE+ +    I     +
Sbjct: 300 NEGRGYILRRLIRRIIRSARLLGAQGAVIEQLLGTVREAMTPSYPEIEENWERIRSVGVT 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E++ F KTL+ G  L +  L+        ++ G VAF L+DTHG P+D+ +++     L 
Sbjct: 360 EEKAFLKTLESGSQLFEQFLTEARNSGTSVVPGAVAFSLHDTHGFPIDLTREMAEEASLT 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F++ + EQ++RA+A S        +   +        T F GY+         +
Sbjct: 420 -VDEAGFHELMAEQKARAKADSAAKKHVHADLSVYRAFIDSHPTHFTGYE------NTAD 472

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           + KVL                  ++  G++ + A +GQ  +V+ DQTPFYAE+GGQ+ D 
Sbjct: 473 EGKVL-----------------GLIVDGQLADRASAGQHAQVILDQTPFYAESGGQMADR 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G   ++ DVQK A+ ++ H   V  G L     L   +D + R Q    HS TH
Sbjct: 516 GSLRGPGGLAKVVDVQKIAKKVWAHLIEVTEGELAIGELLEARVDQKWRHQARQAHSGTH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG    Q GS   P  LRFD ++   +T  +L+ IE+  N  +  +  V T
Sbjct: 576 LIHAALREVLGPTAVQAGSMNKPGYLRFDFSYGDQLTEKQLQQIEEIANSAVDTDYQVNT 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E+A A GA AL G  Y  +VRVV +    GG  S  LCGG HV  + +I  + ++
Sbjct: 636 IETSLEEAKAMGAMALFGENYGKQVRVVEI----GGPFSMELCGGIHVDHSSQIGPISVL 691

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ESS+ +G+RRIEA TG  +  HL      + +LA+  K +   +  R++ +  + +  +
Sbjct: 692 GESSVGSGVRRIEAYTGMDSFRHLAADRSLVANLAANFKATSEEIPERIDALTAKLKAAE 751

Query: 772 LIHAKRKLQLNVEDL---------SCHKIADVNFMSHIISE-VDSKELKSV-MDALQK-K 819
               K+  QL  + L         S   ++ V  ++  + E + +KEL+SV  DA+ +  
Sbjct: 752 ----KQVQQLRAQQLAAQVGSIVDSAADVSGVKVLTQNLGEGLGAKELRSVAQDAIARFN 807

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSG 878
            ++ +++      EK   V     + +     A DL +   A+V   G GGG+P +AQ  
Sbjct: 808 SETAVVLFTSQDGEKVPFVAAANPQAVERGLKAGDLVKAFGAEVG--GRGGGKPALAQGS 865

Query: 879 GPNGNKADQAIAGV 892
           G + +  D  +A V
Sbjct: 866 GSDASGVDAGLAAV 879


>gi|124009945|ref|ZP_01694610.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123984029|gb|EAY24407.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 883

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 328/929 (35%), Positives = 504/929 (54%), Gaps = 89/929 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FL+FF++  H+++ S+ L+  NDPTLMFTN+GM  FK+ F G +    + V   Q
Sbjct: 5   TIRQKFLDFFREKQHQIVDSAPLVVKNDPTLMFTNAGMNQFKDFFLGTKTAENRRVADTQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ F+L + RL
Sbjct: 65  KCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVFELPKDRL 124

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+TV+        + D+EAF +WKK   ++ D+II  +  DNFW M ETGPCGPCSEI  
Sbjct: 125 YVTVFEGDKGDSLEPDQEAFDIWKKY--INEDRIIYASKEDNFWEMGETGPCGPCSEIHI 182

Query: 178 DQGECIP-GGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D  +       PG    +++  + +EIWNLVF+QF +   +    LP   +DTGMG ER+
Sbjct: 183 DLRDANEIAKTPGKGLVNQDDPQVVEIWNLVFIQFNRMANKSLQNLPDKHVDTGMGFERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           A  +Q K +NYD D+F+ +IQ   +V G +Y  E    +  RVI DH+R+ SF I DG L
Sbjct: 243 AMAIQGKKSNYDTDVFQPMIQYLAKVAGTQYGKEEKIDIALRVIADHIRAISFAITDGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P N G GYV+RRI+RRA+ Y    LG+ EP +  L+P L  +    +PEL Q +  +   
Sbjct: 303 PGNNGAGYVIRRILRRAVRYGYSYLGFNEPFLHTLVPMLSEQFAEVFPELKQQQAHVSNI 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG---KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +  E++ F +TL  GL LLD V++      + EI   DV F L D +G P D+   +   
Sbjct: 363 IIQEEKSFLRTLANGLKLLDEVVAKTKEKQQKEIAGIDV-FTLSDRYGFPSDLTNLVASE 421

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL GID   F + L++Q+ R++  +    +G     W  L    G ++FIGYD    S 
Sbjct: 422 NGL-GIDEAGFKEELKKQKLRSQQDAQK-STGD----WIVLNS--GESEFIGYD--ETSS 471

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F K                        +++  EI  E    ++ E+V + TPFYAE+GGQ
Sbjct: 472 FTK------------------------VLRYREI--EVKKKKQYEIVLETTPFYAESGGQ 505

Query: 528 LGDTGC----AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV---LTIDYQNR 580
           +GDTG     A    + + + D  KK   + +H++         +++ V     +  Q R
Sbjct: 506 VGDTGSLEFRAEAGTVTVPVIDT-KKENDLIIHYSPKNDFTKIADLAQVEVFAQVKEQRR 564

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R    NHSATHL+H AL  +LG HV Q GS +    LRFD +H+  +T  E+  +E  VN
Sbjct: 565 RLTENNHSATHLVHSALRQVLGQHVEQRGSLVNDVILRFDFSHNAKMTDEEIAEVERIVN 624

Query: 641 DIIAQNLPV-VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           + I +N+ +   R +  ++AI S GA  L G KY D VRV++ +      +S  LCGG H
Sbjct: 625 EKIRENIALDERRAVPYKEAIESLGATGLFGEKYGDTVRVITFDEN----YSRELCGGCH 680

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V STG I    I++E+S+ +G+RRIEA+T  +A  ++  Q   +  +   LK +  ++  
Sbjct: 681 VPSTGVIGFFKIITEASVASGVRRIEAVTATKAEEYVQNQVALVNQVKDLLK-NPKDLPK 739

Query: 759 RVEEIWEEYRKL---------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
            +E + +E   L         Q + A ++  L+    +  +   +NF++  +S   +  L
Sbjct: 740 AIESLIKEKTDLSKQIEVLENQQVQALKQGLLD----TVKQTNGINFIAQKVSLPSADAL 795

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867
           K++   ++K  Q  + M++    + K  + ++++++L++    NA  + +  A+ +  GG
Sbjct: 796 KNLAFDVRKN-QDNLFMVLASDIKGKPQIAVMISDNLVEEKSLNAGKIVKELAREI-KGG 853

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG+   A +GG +    D+ +     F+
Sbjct: 854 GGGQAFFATAGGKDATGLDKVVERAEEFV 882


>gi|284037267|ref|YP_003387197.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816560|gb|ADB38398.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 890

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 348/927 (37%), Positives = 493/927 (53%), Gaps = 92/927 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FFQ   H ++ S+ L+  NDPTLMF NSGM  FK+ F G   P  + V   QK
Sbjct: 6   IRRHFLDFFQSKQHLIVASAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSKRVADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + L + RLY
Sbjct: 66  CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYKLPKDRLY 125

Query: 127 ITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V+  D        +EAF LWK I G   D+II     DNFW M +TGPCGPCSEI  D
Sbjct: 126 VSVFQGDAKDNVPFDQEAFDLWKPIVG--EDRIIYGNKKDNFWEMGDTGPCGPCSEIHVD 183

Query: 179 --QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
               E I    PG    + +  + +EIWNLVFMQF ++       LP   +DTGMG ER+
Sbjct: 184 LRTPEEI-AEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEALPARHVDTGMGFERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGI 290
              +Q K +NYD D+F   I+  E+++G+ Y    G   V  RVI DH+R+ SF IADG+
Sbjct: 243 CMAIQNKRSNYDTDVFTGTIKVIEEISGISYTAGTGMTDVAMRVISDHIRAVSFAIADGL 302

Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +P+N   GYV+RRI+RRA+ Y    L   EP M  L+P L  +    +PEL   +  +  
Sbjct: 303 VPSNAKAGYVIRRILRRAIRYGYSYLNLAEPFMTKLVPTLAMQFADVFPELTAQRDFVAT 362

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +R E+  F +TL  GL  LD ++  L   GK EI  G+  F+L DT G P D+   I  
Sbjct: 363 VIREEEISFLRTLGTGLGRLDQIIGQLTTDGKTEI-PGETVFELNDTFGFPADLTALIAR 421

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            + L  ID   F +AL+EQ++R+R  +      ++   W  + E     +F+GYD     
Sbjct: 422 EKRLT-IDEAGFQKALQEQKARSRKDA-----SSSAGDWIDVNET-DRVEFVGYDQPEAY 474

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RK+  ++                            G +V+VV D+TPFYAE+GG
Sbjct: 475 AQIVKYRKIQNKQ----------------------------GTQVQVVLDKTPFYAESGG 506

Query: 527 QLGDTGC----AIGDGI-RLQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQN 579
           Q+GDTG     +  D I  L + D  KK   + +H      GI  L TE   V  +    
Sbjct: 507 QIGDTGTLELFSGSDQIGTLTVLDT-KKENDLTIHIVQDVTGIDDLLTEADSVYAVINTT 565

Query: 580 RRQL-SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           RR L S NHSATHLLH AL  +LG+HV Q GS + PD LRFD +H   +T  +L  +E  
Sbjct: 566 RRGLTSSNHSATHLLHAALRDVLGTHVGQKGSYVGPDALRFDFSHFSKVTDEQLAEVERI 625

Query: 639 VNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           VN+ I +++ +   R +    A   GA AL G KY D VRV++ +      +S  LCGGT
Sbjct: 626 VNEKIREDIKLDEKRNVPIGQAKELGATALFGEKYGDFVRVITFDPN----YSVELCGGT 681

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +TG I L     E S+  GIRR+EA T   A + +  Q   +  L   LK  + +VV
Sbjct: 682 HVPATGHIGLFKFTGEGSVSTGIRRVEAKTSAGAEALVNEQMAVVSELKELLKAPK-DVV 740

Query: 758 GRVEEIWEEYRKLQ----LIHAKRKLQLNVEDLSCHKIADVNF-----MSHIISEVD--- 805
             V+ + +E   LQ     +  ++  QL  + L   KI  VN       S ++  V+   
Sbjct: 741 KAVQSLLDERAALQKQVEALQNEKVQQLKNQLLD--KIETVNHNGGPGYSRLVERVEVPN 798

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVL 863
           +  LK +   L+ K+ + + +++G     K  + +++ + L+   + NA  + +  AK +
Sbjct: 799 ADALKQLAYDLKAKVDN-LAVVLGADINGKPQLAVMLPDSLIQDKKLNAGQVVKELAKNI 857

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIA 890
             GGGGG+P  A +GG + +  D A+A
Sbjct: 858 -KGGGGGQPFFATAGGTDLSGLDAALA 883


>gi|289706211|ref|ZP_06502574.1| alanine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557050|gb|EFD50378.1| alanine--tRNA ligase [Micrococcus luteus SK58]
          Length = 903

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 320/874 (36%), Positives = 470/874 (53%), Gaps = 71/874 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +  FF+  GH ++PS+SL+   DP+L+FT +GMVPF   F G++ P    V +VQK
Sbjct: 6   IARRWTAFFESRGHRVVPSASLV-SPDPSLLFTVAGMVPFIPYFLGEQTPPSPRVVSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT       F LD
Sbjct: 65  CIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDGGFGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY ED+EA ++W++  G+  ++I R+  +DN+W+  + GP GPCSEIF+D+G 
Sbjct: 121 PERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLERMAT 235
              G   G + +  RYIEIWNLVFMQ+     ++K +  I   L   +IDTG+GLER+A 
Sbjct: 181 AY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELENKNIDTGLGLERLAM 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFLI 286
           +LQ   N Y+ D  + ++  + Q+ G  Y           ++ V  R++ DH+RS+  LI
Sbjct: 240 ILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRSALMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG+ P NEGRGYVLRR++RR +   RL+G TEP+   LLP     M   YP +      
Sbjct: 300 SDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVADEFER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           I     +E++ F +T+  G   LD  +         + G  AF+L+DT+G P+++  +I 
Sbjct: 360 ISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIELTLEIA 419

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G+A +D   F   + EQR RARA +    SG T+   +      G T F GY     
Sbjct: 420 EEAGVA-VDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY----- 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               +   S+V+ ++Q GE V  A +G ++E+V D TPFYAE+G
Sbjct: 474 ------------------TEHTTESVVRGLLQNGEEVPSAGAGTELELVLDATPFYAESG 515

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  DTG   GDG RL++ DVQ   +G+ VH   V  G +      +  ID Q R     
Sbjct: 516 GQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRRLDGEK 575

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  ILG   +Q+GS      LRFD   ++ +++     +ED VN  I  
Sbjct: 576 AHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAESLSAGARSEVEDVVNIAIRD 635

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V+T+ M+ E+A A GA +L G KY DRVRVV ++    G  S  LCGGTHV  T +I
Sbjct: 636 DHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEID----GAWSRELCGGTHVGRTAQI 691

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-------DEKLKSLASFLKVSQGNVVG 758
             L ++ E S+ +G RR+EA+ G  +  HL  +        E  K+ A  LK   G  + 
Sbjct: 692 GSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRIGATLD 751

Query: 759 RV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           R+   E+   E R   L     +L    +D++      V  ++H   +V   +L+S+   
Sbjct: 752 RLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSAGTTVRVLAHHAGDVAGDQLRSLALD 811

Query: 816 LQKKIQS------GIIMLVGISKEKKASVLIVVT 843
           L+ +I+S      G  +LV ++ E K   L++V 
Sbjct: 812 LRTRIESAGGNAAGTPVLVALTAEAKGRPLVIVA 845


>gi|269837587|ref|YP_003319815.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269786850|gb|ACZ38993.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 879

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 333/912 (36%), Positives = 508/912 (55%), Gaps = 58/912 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  F+EFF + GH  +PSSSL+P NDPT++ T +GM      F G E+P    +T++
Sbjct: 4   NEIRRIFVEFFAERGHLHVPSSSLVPHNDPTVLLTTAGMQQMTPYFLGLERPPSVRMTSI 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC R      D+D VG    H TFFEMLGNFS G YFK  AI  AW+LLT+ F + + R
Sbjct: 64  QKCFRT----VDIDEVG-DEEHLTFFEMLGNFSVGDYFKAEAISWAWELLTERFGIPRER 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECI 183
           L  +V+  DE AF  W+   G+    I R+    N+W  +  TGP GP SEIF+D+GE +
Sbjct: 119 LRPSVHRNDEFAFAFWRDEIGIPEHLIARLGDEHNWWGPVGTTGPNGPDSEIFYDRGEEL 178

Query: 184 PGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             G P      +   R++EIWNLVFM+F ++    +  LP+ +IDTGMGLER++ VLQ  
Sbjct: 179 GCGRPDCGPGCDHCNRFLEIWNLVFMEFYKEEDGSQRPLPRKNIDTGMGLERISMVLQGV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298
            + ++ DL+  ++  + ++ G++Y  +  V+   RVI DH R+ +FLI DG+ P NEGR 
Sbjct: 239 GSVFETDLYMPVLLKAAELAGVQYRQDPKVDRSLRVIADHGRAVTFLIGDGVFPGNEGRS 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RL+G   P +  +   +       YP L + +  I + +R E+E F
Sbjct: 299 YVLRRVLRRAVRHGRLIGIDRPFLTEVADVVIDMFAEHYPNLREQQERIRQVIRHEEEHF 358

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G+TL  G+   + + + L    + ++ G  AF+LYDT+G P ++ +++    GL  +D  
Sbjct: 359 GRTLATGIGRFETLAADLRARGETVVPGAEAFRLYDTYGFPYELTEELASDAGLT-VDRE 417

Query: 417 SFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            F++A+  QR  SRA A      + T   ++ +L +K   T F+GY+             
Sbjct: 418 GFDRAMAAQREQSRASAAIFSDEARTRAALYANLTDK--PTVFLGYE------------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                     T   +  V  I+      E A +G++VE+V DQTPFY E GGQ+GDTG  
Sbjct: 463 ----------TTEATGTVVGILGAEAAQESAEAGEQVEIVLDQTPFYPEGGGQVGDTGNI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D    ++ D Q+ A G+ VH  IV  G ++   +    +D Q R  +  NH+ATHLLH
Sbjct: 513 QTDTGVFEVEDTQRPAPGVIVHRGIVREGYIQVGQTAEARVDAQRRADIRRNHTATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + PD LRFD T  +P+ +A L+ +++ VN  I  + PV   I 
Sbjct: 573 TALRRVLGEHVQQAGSLVAPDRLRFDFTSLEPVGAAALREVQEIVNQQILADSPVQAEIK 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++AIA GA AL G KY D VRVV++        S  LCGGTHV+ TGEI L  I  ES
Sbjct: 633 PYQEAIAEGAIALFGEKYGDNVRVVTIPS-----FSKELCGGTHVNHTGEIGLFVITEES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RR+EA+TG+ A  + +   E  + L   L V    +  +V  + E  R+ +   
Sbjct: 688 SVASGVRRVEALTGRAAAEYALRLQEMSQRLVRDLHVPLDELPAQVAALQERLREREREI 747

Query: 775 AKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIMLV 828
            + +++L    + DL   K   V+    + + V++    +++   D L+ K+ SG+++L 
Sbjct: 748 ERLRVELASVQIGDL-IEKAVTVDGTRVLAARVEAPNRDTLLQMGDRLRDKLASGVVVL- 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKAD 886
           G   + + ++L +VT DL+ R   VD  +L  ++  + GG GGGRP +AQ GG + ++ D
Sbjct: 806 GAVIDDRPALLAMVTRDLVQR--GVDAGKLIREITPVVGGRGGGRPELAQGGGTDPSRLD 863

Query: 887 QAIAGVASFLKK 898
            A+    S +++
Sbjct: 864 AALETARSVVER 875


>gi|326382143|ref|ZP_08203835.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198873|gb|EGD56055.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 900

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 334/926 (36%), Positives = 488/926 (52%), Gaps = 84/926 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F + GH  +PS+SLI  +DP L+F N+GMVPFK  F G + P Y   T+VQK
Sbjct: 6   IRKRFLDHFIRAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGDQTPPYDRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR      D++ VG T RH+TFF+M GNFSFG YFK  AI  AW LLT       + +D
Sbjct: 65  CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWKLLTDSVEDGGYGID 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ TVY +D+EA  +W+   G+ A++I R    DN+WSM   GPCGPCSEIF+D+G 
Sbjct: 121 PTKLWPTVYLDDDEAESIWRDEIGVPAERIQRRGMADNYWSMGVPGPCGPCSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E+    +K +  IL   PK +IDTGMG+ER+A
Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGEGTSKDDYEILGPLPKKNIDTGMGIERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL K +I  + ++TG  Y   N    V  RVI DH R+++ LI DG++
Sbjct: 239 CLLQGVDNVYETDLMKPIIDLAAELTGRAYGAGNHEDDVRFRVIADHARTAAMLIGDGVV 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGY------------TEPLMMHLLPALCTEMGSAYPE 339
           PAN+GRGYVLRR++RR +   RLLG               P M  ++  +   M  +YPE
Sbjct: 299 PANDGRGYVLRRLLRRIVRSIRLLGAGNEVSGPDGRGAANPTMERIISEVIDVMSPSYPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
           L Q +  I     +E+  F +TL  G  L         K     ++G  AF L+DT+G P
Sbjct: 359 LEQQRTHIVSVAVAEETTFARTLAAGSKLFSEAADATKKAGSSSISGTDAFTLHDTYGFP 418

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++    GL  +D   F + + EQR+RA+A +    S   +   +      GAT+F
Sbjct: 419 IDLTLEMAAEAGLE-VDRDGFKELMGEQRARAKADASARKSSHADHSVYREFLDRGATEF 477

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            G+D L     + E R                  V  +V  G+ V  A  G ++E++ D+
Sbjct: 478 TGFDEL-----VSEAR------------------VLGLVAGGQRVRSAAPGTELELILDR 514

Query: 518 TPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +P YAEAGGQ+ D G    GDG+RL + DVQK  + +++H  +V+ G +     ++ ++D
Sbjct: 515 SPLYAEAGGQMADRGTITTGDGVRLAVKDVQKVGKKVWLHKVVVDEGEIVEGDEVLASVD 574

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R   +  HS TH++H AL  +LG   +Q GS   P  LRFD      +T A+   IE
Sbjct: 575 AGWRHGATQGHSGTHMVHAALRQVLGPTATQAGSLNRPGYLRFDFHAGTGLTDAQRDEIE 634

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
              N  +  N  V T   +   A + GA AL G  Y DRVRVV +    GG  S  LCGG
Sbjct: 635 QIANQAVESNFAVNTFETDLAKAKSMGAMALFGENYGDRVRVVEI----GGPFSMELCGG 690

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+S+ +I  + ++ ESS+ +G RR+EA  G  +  +L  +   +  LA+ LKV    V
Sbjct: 691 THVASSAQIGPITVIGESSVGSGTRRVEAYVGMDSFRYLSRERALMAGLAASLKVPSEEV 750

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSC---------HKIADVNFMSHIISE-VD 805
             RVE++      L+L  A++ ++ L  E               + D   ++  +++ VD
Sbjct: 751 PDRVEQL-----VLKLKEAEKAVESLRAEQARAAVSGLIDEGATVGDTLVVAARVADGVD 805

Query: 806 SKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           +  L+ ++  L+ +I  ++ ++ L      K    +            A DL +  A ++
Sbjct: 806 ANGLRGLVTDLRGRIADRNAVVALFSAVDGKVPFAIGTTDAARGSGIKAGDLVKEVAPIV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAI 889
             G GGG+P +AQ  G +    D A+
Sbjct: 866 -AGRGGGKPDLAQGSGTDAAGIDAAL 890


>gi|225021330|ref|ZP_03710522.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945712|gb|EEG26921.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 905

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 328/908 (36%), Positives = 487/908 (53%), Gaps = 75/908 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 22  IRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNGTATSI 80

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   D     
Sbjct: 81  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPIDEGGYG 136

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  ++++TVY +D+EA  +W+ + G+  ++I R+   DNFWSM   GPCGP SEI++D+
Sbjct: 137 FDPEKIWVTVYLDDDEAANIWENVVGIPTERIQRLGMADNFWSMGIPGPCGPSSEIYYDR 196

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G + +  RY+EIWNLVFM+ E      + N +    LPK +IDTGMG+ER+
Sbjct: 197 GPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGMGVERI 255

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ   N Y+ DL + +I  ++++TG  Y  N  + +  RVI DH R++  +I DG+ 
Sbjct: 256 ACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMIILDGVT 315

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  I+   
Sbjct: 316 PGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRERIQRVA 375

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            +E+  F KTL+ G  L +   + +   GK  +   D AF L+DT+G P+D+  ++    
Sbjct: 376 ITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGAD-AFALHDTYGFPIDLTLEMAAEA 434

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F++ + EQR+RA+A S     G T+   +        T+FIGYD L     
Sbjct: 435 GLQ-VDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDELT---- 489

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V  ++  G+ V E  +G  VEV+ D + FYAEAGGQ+
Sbjct: 490 -------------------AQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEAGGQI 530

Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GD G   +GD + L++ DVQK  + ++VH A VE G      ++   +D   R      H
Sbjct: 531 GDRGTMTLGDSL-LRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAARQAH 589

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ IE   N  +  + 
Sbjct: 590 SATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVDADW 649

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T     ++A A GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + +I  
Sbjct: 650 QVNTIETTLDEAKAMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQIGP 705

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV------- 760
           + I+ ESSI +G RRIEA +G  +  +L  +   +  LAS LK     V  R+       
Sbjct: 706 VSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLTTKL 765

Query: 761 ---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816
              E+  E  RK +L+    +L         H    +   S ++ +   + +L+++   +
Sbjct: 766 KEAEKTIENLRKAELLAQGNRLVAR-----AHLPNGIIVASAVLPDGTTAGDLRTLAADV 820

Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           +  +  ++G+++L   + + K   ++  T++ + R  NA  + +     +  G GGG+P 
Sbjct: 821 KNHLAGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPD 879

Query: 874 MAQSGGPN 881
           MAQ  G N
Sbjct: 880 MAQGSGSN 887


>gi|208435135|ref|YP_002266801.1| alanyl-tRNA synthetase [Helicobacter pylori G27]
 gi|208433064|gb|ACI27935.1| alanyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 817

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 317/851 (37%), Positives = 474/851 (55%), Gaps = 60/851 (7%)

Query: 36  LMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
           ++FTN+GMV FK+IFTG   +P     T+ Q C+RAGGKHNDL+NVG T RHHT FEMLG
Sbjct: 1   MLFTNAGMVQFKDIFTGMVPRPSIPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLG 60

Query: 95  NFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           NFSFG YFKE  I  AW+ +TK      + LYI+V+++D+EA KLW+K   +  D+I ++
Sbjct: 61  NFSFGDYFKEETILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKF--VPVDRIKKM 118

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQ 210
              DNFW M ++GPCGPCSEI+ DQGE       GS +    EG+R++EIWNLVFMQ+E+
Sbjct: 119 GDKDNFWQMGDSGPCGPCSEIYIDQGE---KHFKGSEDYFGGEGDRFLEIWNLVFMQYER 175

Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV 270
            N      LPK SIDTGMGLER+  +L+ K NN+D  LF  L+    ++T + Y      
Sbjct: 176 SNDGVLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMGEISELTSLDYASEFQP 235

Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC 330
           + RV+ DH R+ +FL+A G+    EGRGYVLRRI+RRA+ +  L+G  E  +  ++  +C
Sbjct: 236 SFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVC 295

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +  + +  L ++K ++ +    E+ERF +TL+ G+ L +  L HL +++I +G +AFKL
Sbjct: 296 EQFSNTHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKL 355

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           YDT G PLD+  D+L + G A +D+  F   ++EQ  R++A   G  +      + ++  
Sbjct: 356 YDTFGFPLDLTNDMLRSHG-ACVDMQGFELCMQEQVKRSKASWKGKQNNAD---FSAILN 411

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
            Y   +F+GY+                 + P  +     S  K I        +A   Q+
Sbjct: 412 AYAPNEFVGYE---------------TTECPAKVLGFFDSDFKEIT-------DANPNQE 449

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V V+ ++TPFYAE GG +GD G  + D     I    K   G+      +++ + + +  
Sbjct: 450 VWVLLEKTPFYAEGGGAIGDRGTLLKDNEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQV 509

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D   R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   
Sbjct: 510 IAQVSD--ERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDE 567

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           EL+ +ED VN  I ++L      M    A   GA AL   KY + VRVVS +       S
Sbjct: 568 ELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEA-----S 622

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGG HV +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK
Sbjct: 623 IELCGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK 682

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
               +V+  + ++ E  +  Q    K  + +   DL   KI  V+ +  ++ + D KE+ 
Sbjct: 683 --NNDVIAGINKLKESVKNSQ----KAPVSM---DLPIEKIHGVDLVVGVVEQGDIKEM- 732

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
             +D L+ K +  + M+    KE +   L    ++   + NA   A   A++L GG GGG
Sbjct: 733 --IDRLKSKHERLLAMV--FKKENERITLACGVKNAPIKANA--WANEVAQIL-GGKGGG 785

Query: 871 RPHMAQSGGPN 881
           R   A +GG +
Sbjct: 786 RDDFASAGGKD 796


>gi|326496549|dbj|BAJ94736.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 981

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 336/917 (36%), Positives = 505/917 (55%), Gaps = 91/917 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       TT Q
Sbjct: 87  AIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCATTSQ 145

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI+ AW+L TKE+ L   RL
Sbjct: 146 KCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKDAIKWAWELTTKEYGLPPERL 201

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +I+V+++D+E F +W    G+  ++I R+  +DNFW+   TGPCGPCSE+++D      G
Sbjct: 202 WISVFEDDDETFSIWLNEVGVPKERIKRMGEDDNFWTSGATGPCGPCSEMYYDF-HPERG 260

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            L     +  R+IE +NLVFMQ+ + +      L + +IDTGMGLERMA +LQ   NNY+
Sbjct: 261 SLNADLNDDSRFIEFYNLVFMQYNKNDDGSLEPLKQKNIDTGMGLERMARILQNVPNNYE 320

Query: 246 IDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +++ +  +  + Y   +     N +VI DH+R+  +LI+DG++P+N GRGYV+R
Sbjct: 321 TDLIFPIMEKAASMALVSYSKADDAMRTNLKVIGDHMRAVVYLISDGVIPSNIGRGYVVR 380

Query: 303 RIMRRAMCYARLLGYT----EPLMMHLLPALCTEMGSAY----PELIQAKLLIEETLRSE 354
           R++RR +   RL+G      E     +LP+L   + S      P++   +  I   L+ E
Sbjct: 381 RLIRRVVRTGRLIGMRGDGHENSEGAVLPSLAETVISLSSEIDPDVESRRKSILGELQRE 440

Query: 355 DERFGKTLDRG-------LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           + RF +TL RG       L    G    +G    L+G   F LYDT+G P++I  +I   
Sbjct: 441 ELRFVQTLGRGEKLLDELLDEALGSAGDIGV-PCLSGKDVFLLYDTYGFPIEITAEIASE 499

Query: 408 RGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           RG+  ID+  F+  +E QR +++A  + + L  G   +I  S+ +    T+F+GY+ L  
Sbjct: 500 RGVT-IDMKGFDIEMENQRKQSQAAHNVIKLSVGNETEIVKSIPD----TEFLGYESLF- 553

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +++VK ++  G  VE    G  VE++ D+TPFYAE+G
Sbjct: 554 ----------------------ATAVVKGLLINGSPVENVSEGTDVEILLDRTPFYAESG 591

Query: 526 GQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           GQ+GD G               ++I DVQK    IFVH   +++G +     +   +D +
Sbjct: 592 GQVGDNGFLYVYEEEGGKQNAVIEIKDVQKSLGNIFVHKGTIKQGSIEVGKKIDAAVDGK 651

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+    +H+ATHLL  AL +++GS  SQ GS +  D LRFD +  +P+T  EL  IE  
Sbjct: 652 LRQGAKAHHTATHLLQSALKSVIGSETSQAGSLVAFDRLRFDFSFHRPLTEKELLEIESL 711

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I+    + T +M  +DA  +GA A+ G KY ++VRVV V     GV S  LCGGTH
Sbjct: 712 VNQWISDATHLETNVMALQDAKNAGATAMFGEKYGEQVRVVEVP----GV-SMELCGGTH 766

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           VS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV   +V  
Sbjct: 767 VSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCSRDNYMRHLCSSLKVKAEDVNS 826

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---------DVNFMSHIISEVDSKEL 809
           RVE I EE R  +  +    L+  +  L    +A         +V  +   + +VD+  L
Sbjct: 827 RVETILEELRTAR--NESSSLRSKIAVLKAASLASKAVLVEPHNVRILVENMGDVDADGL 884

Query: 810 KSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG--- 865
           KS  + L   +Q    +++G S  + K S++   +  +      V +   + K +GG   
Sbjct: 885 KSAAEHLVGTLQDPAAVILGSSPGDGKVSLVAAFSPGV------VKMGVQAGKFVGGIAK 938

Query: 866 ---GGGGGRPHMAQSGG 879
              GGGGG+P+ AQ+GG
Sbjct: 939 LCGGGGGGKPNFAQAGG 955


>gi|269956481|ref|YP_003326270.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305162|gb|ACZ30712.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 895

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 318/868 (36%), Positives = 480/868 (55%), Gaps = 66/868 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L++F+   H ++PS+SL+   DP+++FT +GMVPF     G E   +    +V
Sbjct: 4   ADIRQRWLDYFESKDHAIVPSTSLV-SPDPSILFTIAGMVPFIPYILGTEPAPWPRAASV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKC+R G    D++NVGRT RH TFF+M GNFSFG YFK  AI +AW+LLT +     + 
Sbjct: 63  QKCIRTG----DIENVGRTTRHGTFFQMNGNFSFGDYFKTGAIDMAWELLTTDQGQGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL++T++DED E++    +  GL    I+R+   +NFW   + GP GPC+E  +D+
Sbjct: 119 FDGDRLWVTLWDEDTESYDALTQGIGLDPKHIVRLPRQENFWDTGQPGPAGPCAEWHYDR 178

Query: 180 GECI-PGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           G    P  + G+ + G +RY+EIWNLVF QF   E   K    +  L + +IDTG GLER
Sbjct: 179 GPAYGPDAVGGNVDPGGDRYLEIWNLVFDQFVRGEGTGKDYPLLGELERKAIDTGAGLER 238

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           +A +LQ K N ++ID    +I+  EQ+TG KY  E  + V  RVI DH+RS   +I DG+
Sbjct: 239 IAFLLQGKENMFEIDETYPVIERVEQLTGKKYGAEAEDDVRMRVIADHVRSGLMVIGDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+   RLLGY    +  LLP     M ++YPEL      I E 
Sbjct: 299 RPSNEGRGYVLRRILRRAVRSMRLLGYDAEALPELLPVSKDAMKASYPELETGFAKIAEV 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              E+E F +TL  G  +LD  ++   K   + L G  AF L+DT+G P+D+  ++   +
Sbjct: 359 AYGEEEAFRRTLSAGTTILDVAVAKAKKSGVQTLGGAEAFALHDTYGFPIDLTLEMAAEQ 418

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRGS 466
           G+A +D  +F   + EQ+ RARA +L   +G  + + + S+     A  +F+GY      
Sbjct: 419 GVA-VDEQAFRSLMAEQKQRARADALAKKTGHADLRAYESIVSALSAPVEFLGY------ 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           DL + V+  V  ++  G     A +   VEVV D+TPFYAEAGG
Sbjct: 472 ---------------TDLDSAVT--VVGLLVDGVPAPVATAPADVEVVLDRTPFYAEAGG 514

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  +++ DVQ+  +G+ VH   +  G +        TID + R  +S 
Sbjct: 515 QLADQGTIVLDGGATVEVDDVQRPIKGLNVHRGRLVEGTITLGDPGTATIDVERRVAISR 574

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATH++H AL  ++G   +Q GS   P  +RFD      + ++ L  IE+ VN  + +
Sbjct: 575 AHSATHMIHKALHELVGDDRTQAGSENAPSRVRFDFRSPSAVPASALGEIEERVNLRLQE 634

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V   +M    A   GA AL G KY D VRVVS+    GG  S  LCGGTHV  +GEI
Sbjct: 635 NLEVTDELMPIATARDLGAMALFGEKYGDIVRVVSI----GGDWSRELCGGTHVRLSGEI 690

Query: 706 MLLYIVSESSIRAGIRRIEAITGQ-----RARSH-LMGQ-DEKLKSLASFLKVSQGNVVG 758
             + ++ E+SI +G+RR++A+ G+     +A+ H L+GQ    L +    L    G+++ 
Sbjct: 691 GRVALLGEASIGSGVRRVDALVGEGAYGFQAKEHALVGQLTGLLGARPEELTDRVGSLLS 750

Query: 759 RVEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +++E  +E    RK QL+ A  +L     D+   ++  V + +  ++  D  +L++++  
Sbjct: 751 KLKETEKELAALRKGQLLAAAGRLASEASDVDGVRV--VTYDAGDVASAD--DLRALVLD 806

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVT 843
           ++ ++     +LV +      S L+VV 
Sbjct: 807 VRGRLGDAAPVLVAVGGTAGGSPLVVVA 834


>gi|111024085|ref|YP_707057.1| alanyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123144037|sp|Q0S0N7|SYA_RHOSR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110823615|gb|ABG98899.1| alanine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 890

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 312/780 (40%), Positives = 436/780 (55%), Gaps = 55/780 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV F   F GQ+ P Y   T+VQK
Sbjct: 6   IRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           CVR      D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT   D      D
Sbjct: 65  CVRT----LDIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             R+++TVY +D++A  +W+   G+   +I R    DN+WSM   GPCGPCSEI++D+G 
Sbjct: 121 PERIWVTVYLDDDDARDIWRDEVGVPESRIQRRGMADNYWSMGIPGPCGPCSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234
           E    G P + E+  RYIEIWNLVFMQ E      + N +    LPK +IDTGMG+ER+A
Sbjct: 181 EYGKEGGPEADED--RYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILP 292
            +LQ   N Y+ DL + +I  +E+++G KY    ++ V  RVI DH R+++ LIADG+ P
Sbjct: 239 FLLQGVDNVYETDLVRPVIAKAEELSGRKYGAVHDDDVRFRVIADHARTAAMLIADGVNP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            N+GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE    
Sbjct: 299 GNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIETVAV 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+  F KTL  G  L +G    +   GK  I  GD AF L+DT+G P+D+  ++    G
Sbjct: 359 GEETAFLKTLTSGSKLFEGAAESVKASGKSTI-GGDQAFALHDTYGFPIDLTLEMAAEAG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D   F   + EQR RA+  +        +   +      G T+F G+  L      
Sbjct: 418 LT-VDEEGFRTLMAEQRQRAKDDAQARKHAHADLTVYKELLDRGPTEFTGFHELVSEAH- 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                                 V A++ QG+ V  A +GQ VEV+ D++P YAEAGGQ+ 
Sbjct: 476 ----------------------VLALISQGQRVPVATAGQDVEVILDRSPLYAEAGGQIA 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588
           D G   G G+R+++ DVQK A+ ++VH   V+ G L TE  +VL  +D   R+  +  HS
Sbjct: 514 DLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQEGQL-TEGDVVLAQVDAAWRKGATQGHS 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            TH++H AL  +LG +  Q GS   P  LRFD +    +T A+ + IE   N+ +A +  
Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAADYS 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T + + + A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I  +
Sbjct: 633 VNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIGNV 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ E S+ +G+RR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E  R
Sbjct: 689 TLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLR 748


>gi|229493550|ref|ZP_04387335.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229319511|gb|EEN85347.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 890

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 310/780 (39%), Positives = 434/780 (55%), Gaps = 55/780 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMVPF   F GQ+ P Y   T+VQK
Sbjct: 6   IRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR      D++ VG T RH+TFF+M GNFSFG YFK+ AI  AW LLT       + +D
Sbjct: 65  CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDGGYGID 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY +D+EAF +W+   G+  ++I R    DN+WSM   GPCGPCSEIF+D+G 
Sbjct: 121 PTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIFYDRGA 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E+    NK +  IL   PK +IDTGMG+ER+A
Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
            +LQ   N Y+ DL + +I  + ++TG  Y  ++   V  RVI DH R+++ LIADG+ P
Sbjct: 239 FLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIADGVNP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            N GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE    
Sbjct: 299 GNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIENVAV 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+  F KTL  G  L +     +   GK  ++ GD AF L+DT+G P+D+  ++    G
Sbjct: 359 GEETAFLKTLASGSALFENAAETVKSSGK-SVIAGDQAFALHDTYGFPIDLTLEMASEAG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D   F   + EQR RA+  +        +   +      GAT+F G+D L      
Sbjct: 418 LT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVSEAH- 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                                 V A++  G  V  A +GQ VEV+ D++P YAE+GGQ+ 
Sbjct: 476 ----------------------VLALIVDGVRVPVATAGQDVEVILDRSPLYAESGGQIA 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588
           D G     G+  ++ DVQK A+ ++ H   V++G + TE  +VL  +D + R+  +  HS
Sbjct: 514 DIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEI-TEGDVVLAHVDAEWRKGATQGHS 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            TH++H AL  +LG +  Q GS   P  LRFD +    ++ ++ + IE   N+ +A N  
Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASNYA 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T + + + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I  +
Sbjct: 633 VNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIGQV 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ E S+ +GIRR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E  +
Sbjct: 689 TLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLK 748


>gi|88802166|ref|ZP_01117694.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782824|gb|EAR14001.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 872

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 328/873 (37%), Positives = 471/873 (53%), Gaps = 91/873 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL FF++  H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    ++  QK
Sbjct: 6   IRATFLNFFKEKSHLIVPSAPMVTKDDPTLMFINSGMAPFKEYFLGNAIPKNNRISDSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDILY 125

Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           +TV+         + D EA+ LWKK   +  D+I++    DNFW M   GPCGPCSEI  
Sbjct: 126 VTVFEGTEDADALEMDTEAYDLWKK--HIPEDRILKGNKKDNFWEMGAQGPCGPCSEIHV 183

Query: 178 DQGECIPGGLPGSSEEGER-------------YIEIWNLVFMQFEQQNKQERFILPKMSI 224
           D           S+EE E+              +EIWNLVFMQF ++       LP   I
Sbjct: 184 D---------IRSAEEKEKVDAKTLINGDHPHVVEIWNLVFMQFNRKADGSLEDLPNKHI 234

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSS 282
           DTGMG ER+  VLQ   +NYD D+FK +I     +T  KY  N    +  RVI DHLR+ 
Sbjct: 235 DTGMGFERLCMVLQNVQSNYDTDIFKPIISEIGTITNTKYGSNQQQDIATRVISDHLRAV 294

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +F IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+A+PELI
Sbjct: 295 AFSIADGQLPSNTGAGYVIRRILRRAIRYGFTFLDKKEPFIYKLVDVLSKKMGTAFPELI 354

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
             K LIE  +R E+  F KTLD+GL+LLD ++S     EI +G+  F+LYDT G P+D+ 
Sbjct: 355 DQKQLIENVIREEEASFLKTLDKGLLLLDVLISSTDSKEI-SGEKVFELYDTFGFPVDLT 413

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
             IL  +G   +D   F + L++Q+ R+RA      S +  + W  L E     +F+GYD
Sbjct: 414 ALILAEKGYT-LDEKGFQEELQKQKKRSRA-----ASESATEDWTVLVED-AVAEFVGYD 466

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L+ S  +   RKV   K                            G+  ++VF+ TPFY
Sbjct: 467 TLKTSVKITRYRKVTSVK---------------------------DGEMYQLVFNLTPFY 499

Query: 522 AEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
            E GGQ+GD G ++ D  G  + I D +K+   I      + + IL      +  ++ + 
Sbjct: 500 PEGGGQVGDKG-SLEDIHGNVVYILDTKKENNVIIHFTKNLPKHILE---GFIAVVEEKQ 555

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R + + NH+ATHLLH AL  +LG+HV+Q GS +    LRFD +H   +T+ EL  +E+ V
Sbjct: 556 RYRTACNHTATHLLHQALRKVLGTHVTQKGSAVHSKYLRFDFSHFSKLTTDELFEVENFV 615

Query: 640 NDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I+  LP+   R +  +DAI  GA AL G KY D VR +      G   S  LCGGTH
Sbjct: 616 NARISGKLPLEEQRNVPMQDAIDQGAMALFGEKYGDTVRAIKF----GA--SVELCGGTH 669

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +T ++    I SE  + +GIRRIEAIT    +      ++ L  +   L  ++     
Sbjct: 670 VKNTSDLWHFKIKSEVGVASGIRRIEAITNDAVKDFYAKNNKILSEIKETLNNTK-EPTK 728

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEV--DSKELKSVM 813
            V ++ EE   LQ    ++ L+   + LS     ++ D+N +S + ++V  D+  +K++ 
Sbjct: 729 AVLKLQEENNFLQK-QIEQLLREKAQHLSGELKSQLIDMNGVSFLAAKVDLDANGIKNLA 787

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             L K   +  ++      + KA +   ++++L
Sbjct: 788 FDLGKDATNLFLLFANAPSKDKAMLTCYISKEL 820


>gi|317056551|ref|YP_004105018.1| alanyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315448820|gb|ADU22384.1| alanyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 885

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 311/891 (34%), Positives = 474/891 (53%), Gaps = 46/891 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++++ +R ++L+FF+  G     S  L+P ND +L+   +GM P K  FTGQE P    +
Sbjct: 4   TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T RH T+FEMLGNFSFG YFK+ AI  AW+ +T    L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+++VY++D+EA K+W +  G+  D I+R+   DNFW     GPCGPCSEI+FD+GE
Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q 
Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +D+D  K +     ++ G +Y  E    V+ RVI DH+R+ +FL +DG+LP+NEGR
Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGAEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + +LLG     +  L+  +       Y EL +    I + L +E++ 
Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  T+DRG+ +LD  +  L  +    L+G+  FKL DT+G PLD+ ++IL  +GL+  D 
Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLSA-DE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   +E+QR  AR      G    E+  F   +K  +T+F GYD         ED   
Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYD-------KTED--- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + ++  +    +++E A     V +V DQT FYAE+GGQ GDTG   
Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQTGDTGIVE 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  + D QK   G F     V  G L     +   +D   R     NHS  HLL  
Sbjct: 516 TATGKADVLDTQKAVGGKFALKVKVTEGALTVGQQVTFKVDKAKRLATMRNHSCAHLLQA 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL ++LG HV Q G  +    LRFD +H + +T+ E   +E  VN  I   L +    M 
Sbjct: 576 ALRSVLGDHVHQAGQLVDSQRLRFDFSHFEAMTNEEKAKVEALVNKYIFDALDITMEEMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL G KY + VRVV++  +     S   CGGTH+++T +I L  I+SE+S
Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMG-DKSDAASIEFCGGTHLNNTSKIGLFKIISENS 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIH 774
           + +G+RRIEA+TG      L    + +   +  LK++    +V R   +  E + L+   
Sbjct: 695 VASGVRRIEAVTGTGVLELLNSNIDTINKASETLKLNNPAELVARCGAVMHEIKGLE--K 752

Query: 775 AKRKLQLNVEDLSCHKI----ADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIML 827
            +  L+ ++ ++    +     DVN +S     ++ +    L+ + D L+    + ++++
Sbjct: 753 ERDSLETSMANMRAKSVLENAVDVNGVSVATAQLTNIKPDVLRKMADELKAANDNVLVIM 812

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             ++ EK   V     E +    +A  +A   A  L  G GGGRP  A +G
Sbjct: 813 TTVNGEKGNIVAAAGKEAVAKGAHAGKIAGKIA-ALTNGKGGGRPDSAMAG 862


>gi|296139683|ref|YP_003646926.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027817|gb|ADG78587.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 890

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 338/915 (36%), Positives = 490/915 (53%), Gaps = 69/915 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F + F K GH  +PS+SL+  NDP  +F  +GMVPF   F GQ+ P Y+  T++QK
Sbjct: 6   IRKRFTDHFVKAGHTQVPSASLV-LNDPNQLFVIAGMVPFVPYFLGQQTPPYERATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR      D++ VG T RH+TFF+M GNFSFG YFK  AI+ AW LLT       F +D
Sbjct: 65  CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKRDAIRFAWSLLTNPVEDGGFGMD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL+ TVY +D+EA  LW ++ G   ++I R    DN+WSM   GP GPCSEIF+D+G 
Sbjct: 121 PQRLWSTVYLDDDEARDLWLEV-GQVPERIQRRGMKDNYWSMGIPGPAGPCSEIFYDRGP 179

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E  Q   +E F     LPK +IDTGMG+ER+A
Sbjct: 180 EY--GVEGGPEADEDRYIEIWNLVFMQNERGQGGGKENFEILGELPKKNIDTGMGIERVA 237

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR---VIVDHLRSSSFLIADGIL 291
            +LQ   N YD DL + +I  ++ +TG +Y   +  + R   VI DH R++  LI DG+ 
Sbjct: 238 FLLQGVDNVYDTDLLRPVIDRAQDLTGQRYNAGDPEHDRLFRVIADHTRTAVMLIEDGVN 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  ARLLG T   M   +  +   M  +YP L      I    
Sbjct: 298 PGNDGRGYVLRRLLRRVVRSARLLGATGETMGVFVDTVIATMSPSYPSLADDAQRIRTVA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             E+  F KTL++G+ L    +      GK  +L+GD AF L+DT+G P+D+  ++    
Sbjct: 358 TGEEAAFLKTLEQGITLFGNAVDSTKSAGK-TVLSGDDAFTLHDTYGFPIDLTLEMASEA 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   + EQR RA+  +    S   +   F      G T+F G+D L     
Sbjct: 417 GLQ-VDEDGFRALMAEQRQRAKDDANSRKSALADLSVFREFLDRGPTEFTGFDEL----- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
              D +VL                  +V+ G  V     G  VE+V D++P YAEAGGQL
Sbjct: 471 -VSDARVL-----------------GLVKDGVRVPVVHQGDDVEIVLDRSPLYAEAGGQL 512

Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G      G ++ +TDVQ+ A+ ++ H   V  G +    ++ + +D  +R   +  H
Sbjct: 513 ADIGTITTAAGAQIVVTDVQRVAKTLWRHQGTVAVGEVSEGDAVTVAVDAGHRHGSTQGH 572

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THL+H AL  +LG +  Q GS   P  LRFD   S  ++  +   IE   N+ +  + 
Sbjct: 573 SGTHLVHAALRQVLGPNAVQAGSLNRPGYLRFDFRWSGGLSEDQRTDIERVTNEAVQADY 632

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T++ + E A  SGA AL G  Y D+VRVV +    GG  S  LCGGTHV+S+G +  
Sbjct: 633 DVHTQVTDLETAKKSGAMALFGENYGDQVRVVEI----GGPFSMELCGGTHVASSGLVGP 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++ ESS+ +G+RR+EA  G  ++ +L  +   + +L S LKV   +V GRVE +    
Sbjct: 689 VTLLGESSVGSGVRRVEAYVGLDSQKYLAKERALVSALTSSLKVPAEDVPGRVESLVSRL 748

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFM-SHIISEVDSKELKSVMDALQKKI- 820
           +  +    K + Q  +  L     S  ++  V  + +   S V + EL+S++  L+ ++ 
Sbjct: 749 KDAEKELEKLRAQAALSALSELASSPDRVGAVRLVAAQAPSGVAAGELRSLVTQLKGRLG 808

Query: 821 -QSGIIMLVGISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            ++ +I L  +  EK   V+      +DL     A D+ + +A  + GG GGG+  MAQ 
Sbjct: 809 AEAAVIALFAVDGEKVPFVVAANDAAQDL--GVKAGDVVKAAAPAV-GGRGGGKADMAQG 865

Query: 878 GGPNGNKADQAIAGV 892
            G + +    A+A V
Sbjct: 866 AGSDASGMGAALAAV 880


>gi|150025983|ref|YP_001296809.1| alanyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|205830094|sp|A6H0Y3|SYA_FLAPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149772524|emb|CAL44007.1| Alanine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 887

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 327/930 (35%), Positives = 486/930 (52%), Gaps = 87/930 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF+  GH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    +   QK
Sbjct: 6   IRQQYLKFFESKGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGTPKSPRIADTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + ++ LY
Sbjct: 66  CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIPKQNLY 125

Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++V++         D+EA+ +WK +  +  D+II     DNFW M + GPCGPCSEI  D
Sbjct: 126 VSVFEGSKEDNVPFDQEAWDIWKGL--IDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               + +    G    + +  + +EIWN VFM+F ++       LP   +DTGMG ER+ 
Sbjct: 184 LRTPEEKAQVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSS 283
             LQ KT+NYD D+F  LI+   Q+TG KY  N + N            RVIVDH+R+ +
Sbjct: 244 MALQGKTSNYDTDVFTPLIEKVTQITGYKYTSNEVKNISEEQNKTNIAIRVIVDHVRAVA 303

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L ++MG  +PE+  
Sbjct: 304 FAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFITKLVAVLASQMGEFFPEIKS 363

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            + L+   +R E+  F +TL++GL LLD V++     E+ +G  AF+LYDT G P+D+  
Sbjct: 364 QQQLVTNVIREEEASFLRTLEQGLQLLDKVVAETKGKEV-SGAKAFELYDTFGFPIDLTA 422

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            IL  +G   +D   FN A++EQ++R+RA      S    + W  L      T F+GYD 
Sbjct: 423 LILREKGYE-LDEAGFNAAMQEQKNRSRA-----ASEVFTEDWSVLIPGNIET-FVGYDK 475

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                 +   RKV  +K                            G   ++V D TPFY 
Sbjct: 476 TENDVKITRIRKVNSKK---------------------------DGILYQIVLDNTPFYP 508

Query: 523 EAGGQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           E GGQ+GD G  +        +  +  I  +  K E   + H   ++     E   V  +
Sbjct: 509 EGGGQVGDKGTLVSANDSSDSEQAKQTIDIIDTKKENNLILH-FAKQLPENIETGFVAKV 567

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +   R   S NHSATHL+H AL +ILG+HV Q GS + PD LRFD +H   ++  +L+ +
Sbjct: 568 NTNLRASTSKNHSATHLMHLALRSILGTHVEQKGSLVNPDYLRFDFSHFSKVSDDQLRQV 627

Query: 636 EDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E +VN  I   L +   R +  ++A+  GA AL G KY D VR++          S  LC
Sbjct: 628 EASVNAQIEAQLQLTEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFG------ESKELC 681

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GG HV +T +I    I+SE ++ AGIRRIEAITG   ++    Q+  L  +   LK  Q 
Sbjct: 682 GGIHVKNTAQIWHFKILSEGAVAAGIRRIEAITGDAVKAFYTNQENTLSEIKEVLKKPQ- 740

Query: 755 NVVGRVEEIWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           +++  V  + ++  KL     QL+  K +   N       +I  +NF+S  + ++     
Sbjct: 741 DILKSVTSLQDDNVKLKKQIEQLLKEKIEGLKNTLVSEFQEINGINFLSKQV-DLSMSST 799

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGG 867
           K ++ AL     +  ++L  I +E   ++   + ++L+     NA  + +   K +  G 
Sbjct: 800 KDLLQALGSLKPNSFVVLASI-EENMPNIHCYIAKELVAGKGLNANVVIKELGKYI-EGN 857

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG+P  A   G N +   +A+     F+K
Sbjct: 858 GGGQPFFASGKGKNVSGIKEALQKAIEFVK 887


>gi|283769383|ref|ZP_06342282.1| alanine--tRNA ligase [Bulleidia extructa W1219]
 gi|283104040|gb|EFC05424.1| alanine--tRNA ligase [Bulleidia extructa W1219]
          Length = 875

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 324/910 (35%), Positives = 497/910 (54%), Gaps = 69/910 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +  R  FL+FF   G  + P +SL+P +DPTL++ N+G+   K  F G++KP+   +   
Sbjct: 9   NETRQLFLDFFASKGCMIEPGASLVPHDDPTLLWINAGVAALKPYFDGRKKPISHRICNA 68

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    + 
Sbjct: 69  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKVEAITWAWEFLTSKKYIGFEP 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY+TVY +D+EA   W K+  + +   IR  T DNFW +   GP GP +E+++D+GE 
Sbjct: 125 ERLYVTVYPDDQEAIDTWIKVGMIPSH--IR-KTEDNFWEIGR-GPGGPDTELYYDRGEK 180

Query: 183 I-PGG----LPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKMSIDTGMGLERM 233
             P G    L     E +RYIE+WN+VF Q++    +  + E   LP+ +IDTGMGLER+
Sbjct: 181 YDPQGKGEELFFQDLENDRYIEVWNIVFSQYDCHPGEMPRSEYPELPQKNIDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILP 292
             ++Q+   N+D DLF  +I A+E++  + Y E    + +RVI DH+R+ +F IADG + 
Sbjct: 241 VALIQDGQTNFDTDLFLPIIHATEKLASVSYQEEKAKMAYRVIADHIRTVTFAIADGAMF 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGY+LRR++RRA+ +   +G  +  M  L+  +   M + YP +++   LI   ++
Sbjct: 301 SNEGRGYILRRVLRRAVRFGLKIGIEKAFMYQLVEVVARNMEAYYPYVVEKIDLIARLVK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F +TL  G  LL   +     ++ L G+V F+LYDT+G P ++ ++I    G   
Sbjct: 361 VEEESFHRTLSMGENLLQSAMEQYQSEKKLPGEVVFRLYDTYGFPFELTKEISFEAGYE- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           +D   F   +E+Q+ RAR     + S  G +E +     E    + F+GY          
Sbjct: 420 VDEEGFKAQMEDQKKRARQARGEIQSMRGQSEDLLNFQTE----SHFVGY---------- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                        + + V+S + A+ + GE +   +   + +VV  +T FYAE+GGQ  D
Sbjct: 466 -------------VQSEVTSKITALFRNGERISSLLG--EGDVVLAETVFYAESGGQCAD 510

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG       ++ ++DVQK   G F+HH  + VE   L+  M +    D + R     NHS
Sbjct: 511 TGILWLGDHKIYVSDVQKSPNGQFLHHVNSDVE---LKEGMEVKGCFDVKKRELTRANHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           + HLL  AL  +LG HV+Q GS   PD  RFD  H + ++  +L+ +E+ VN+ I  ++P
Sbjct: 568 SLHLLQAALKKVLGDHVAQAGSYNCPDYARFDFNHFEKMSEEQLREVENLVNEKIMAHIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T I+  E+A  SGA AL   KY D VR+V++     G  S   CGGTHVS+T E+ L 
Sbjct: 628 VTTEILPIEEAKKSGATALFDEKYGDFVRIVTM-----GDFSKEFCGGTHVSNTSELGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEY 767
           +I SE S+ +GIRRI + T + A  H    ++ LK  AS  K+ + N +  R++ + EE 
Sbjct: 683 HIESEESVGSGIRRITSTTKKVALRHFKEMEDYLKESASLFKLKKWNALQDRIQMVLEEN 742

Query: 768 RKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             LQ     L   K K++         +I  +N +   + + D+  LK     L+ K++ 
Sbjct: 743 MALQHQIKELKDEKMKMESEAVLAKKEEIHGLNVLILELHDQDNAGLKDYAVLLRNKLER 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G ++L  ++K+K   V     E +    NA  + +  A+ L GG GGG+P +AQSGG   
Sbjct: 803 GFVLLANVTKDKVVYVAAASQEAIAAGVNAGHIVKKVAQ-LTGGHGGGKPDLAQSGGKEV 861

Query: 883 NKADQAIAGV 892
           ++   A+  V
Sbjct: 862 DQVKFALESV 871


>gi|15617007|ref|NP_240220.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11134963|sp|P57483|SYA_BUCAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25293087|pir||B84977 alanine-tRNA ligase (EC 6.1.1.7) [imported] - Buchnera sp.  (strain
           APS)
 gi|10039072|dbj|BAB13106.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 878

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/874 (36%), Positives = 501/874 (57%), Gaps = 69/874 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V TVQ+
Sbjct: 8   IRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRVATVQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F++ Q +
Sbjct: 68  CLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFNIPQNK 127

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177
           L+I+VY +D E +K+W  I  + +++IIRI         ++NFW M +TGPCGPC+EIF+
Sbjct: 128 LWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPCTEIFY 187

Query: 178 DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D  + +    +     +  R++EIWN+VF++F + +K +   L   SIDTGMGLER++ V
Sbjct: 188 DYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLERISAV 247

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   +NY ID+F+ LI+   Q++ +    NN+  ++ +VI DH+RS S++IAD ILP+N
Sbjct: 248 LQNVYSNYHIDVFQKLIKNIAQLSSI----NNLDHISFQVIADHIRSCSYIIADNILPSN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           E RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L+ E
Sbjct: 304 EHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVLKIE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+ C      ID
Sbjct: 364 EMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDV-CREKNIKID 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             S+  A E+Q+ +         S   +K +           +    +L  +   +   K
Sbjct: 422 YNSYELAKEKQKEQ---------SNINKKFY---------KNYNNNIILNDTCIFEGYTK 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            + +           S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD G  
Sbjct: 464 TITR-----------SLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDIGQL 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   +   +K  + I  H   +  G +    SL   ID   R  + +NHSATHLLH
Sbjct: 513 YHKKSSFLVEKTKKYGKTI-GHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T  +
Sbjct: 572 ATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKTEEL 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+S+S
Sbjct: 632 NLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKIISQS 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----------VGRVEEIW 764
           S+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++             +E+  
Sbjct: 687 SVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLEKKI 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            + +K +     +K+  NV ++   K+     +++I  + + K L+ ++D L+K++++  
Sbjct: 747 IQLQKKENTQYIKKILKNVTEIKGTKL-----LTNIFYDYEQKSLRMIVDQLKKELKNT- 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           I+++      + ++++ VT +LLD   A+ +  +
Sbjct: 801 IIILINIINNRFTIIVGVTRNLLDYITAIKIMEM 834


>gi|227488808|ref|ZP_03919124.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542195|ref|ZP_03972244.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091230|gb|EEI26542.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182024|gb|EEI62996.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 889

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 327/852 (38%), Positives = 481/852 (56%), Gaps = 66/852 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F + F   GH  +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P ++    T++
Sbjct: 6   IRERFTKHFVDAGHTPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQNPPFENGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   D     
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTGSQDEGGYG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233
           G    G   G   +  RY+E+WNLVFMQ E  +   ++ F     LPK +IDTGMG+ER+
Sbjct: 181 GPEY-GKDGGPVADDNRYLEVWNLVFMQNERGEGTGKDNFEILGPLPKKNIDTGMGVERI 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGN--NIVNHRVIVDHLRSSSFLIADGI 290
           A +LQ   N Y+ DL + +I A+E++TG  Y EG+  + +  RVI DH R++  +I DG+
Sbjct: 240 ACILQGVDNVYETDLLRPVIDAAERLTGSTYGEGSHEDDIRFRVIADHSRTAMMIILDGV 299

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P NEGRGY+LRR++RR +  ARLLG     M   +  +   M  +YPE+ +A+  I   
Sbjct: 300 TPGNEGRGYILRRLLRRIIRSARLLGAKGNTMETFITTIMDTMTPSYPEIEKARERILTV 359

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
             +E++ F +TL+ G  L +  +S +   GK EI +G+ AF L+DT+G P+D+  ++   
Sbjct: 360 AVNEEKAFLRTLESGTELFEQEVSAVKGAGKTEI-SGEKAFTLHDTYGFPIDLTLEMARE 418

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +GL  +D   F+  + EQ++RA+A +     G  +   +        T+FIGYD L G  
Sbjct: 419 QGLT-VDEEGFHSFMAEQKARAKADNQAKKHGAADLTVYREFVDNHPTEFIGYDQLEG-- 475

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                     + P I L  G           GE +  A  G +VEV+ + TP YAEAGGQ
Sbjct: 476 ----------ESPVIGLVAG-----------GEKIHSAKEGDEVEVIVEATPMYAEAGGQ 514

Query: 528 LGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           LGD G   IGD   L + DVQK  + +++H + V  G      +  L +D Q R      
Sbjct: 515 LGDRGTMTIGDAT-LNVNDVQKIGKKLWLHKSTVTAGGFEVGDTAALHVDEQWRHAARQA 573

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL   LG    Q GS   P  LRFD  +++ +T  +L+ IE   N+ +  +
Sbjct: 574 HSATHLIHAALRQTLGPTAVQAGSMNKPGYLRFDFNYAQALTPKQLEEIERITNEAVDTD 633

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T  M  E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV+ + +I 
Sbjct: 634 WTVNTNEMPLEEAKAMGAMALFGENYGDIVRVVEI----GGPFSMELCGGTHVARSAQIG 689

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RRIEA +G  + S+L  +    + LA+ LK    ++  R+ ++ E+
Sbjct: 690 PVAVLGESSVGSGVRRIEAYSGLNSFSYLSKERSLAEGLATALKTPSDDLPERIAQLTEK 749

Query: 767 Y----RKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISE-VDSKELKSVMDALQKK 819
                ++++ +HAK  L   V  L  S  K      ++  + E V +K+L+++   L  +
Sbjct: 750 LKAAEKEIENLHAK-ALADRVGALVDSAKKAGSFELIAENLGETVGAKDLRAMAQDLANR 808

Query: 820 IQ--SGIIMLVG 829
           +   S +++L G
Sbjct: 809 LGSCSAVVVLGG 820


>gi|219681759|ref|YP_002468145.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471461|ref|ZP_05635460.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624602|gb|ACL30757.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 878

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 316/878 (35%), Positives = 501/878 (57%), Gaps = 77/878 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V TVQ+
Sbjct: 8   IRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRVATVQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F++ Q +
Sbjct: 68  CLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFNIPQNK 127

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177
           L+I+VY +D E +K+W  I  + +++IIRI         ++NFW M +TGPCGPC+EIF+
Sbjct: 128 LWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPCTEIFY 187

Query: 178 DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D  + +    +     +  R++EIWN+VF++F + +K +   L   SIDTGMGLER++ V
Sbjct: 188 DYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLERISAV 247

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   +NY ID+F+ LI+   Q++ +    NN+  ++ +VI DH+RS S++IAD ILP+N
Sbjct: 248 LQNVYSNYHIDVFQKLIKNIAQLSSI----NNLDHISFQVIADHIRSCSYIIADNILPSN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           E RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L+ E
Sbjct: 304 EHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVLKIE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+ C      ID
Sbjct: 364 EMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDV-CREKNIKID 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-DR 473
             S+  A E+Q+ ++  +                                  KF K  + 
Sbjct: 422 YNSYELAKEKQKEQSNIN---------------------------------KKFYKNYNN 448

Query: 474 KVLCQKPPI--DLTNGVS-SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            ++     I    T  ++ S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD
Sbjct: 449 NIILNDTCIFEGYTKTITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G          +   +K  + I  H   +  G +    SL   ID   R  + +NHSAT
Sbjct: 509 IGQLYHKKSSFIVEKTKKYGKTI-GHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH  L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + 
Sbjct: 568 HLLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIK 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T  +N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I
Sbjct: 628 TEELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----------VGRV 760
           +S+SS+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++             +
Sbjct: 683 ISQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISFLLNCSTVDIKEKTKKLTIKTKNL 742

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E+   + +K +     +K+  NV ++   K+     +++I  + + K L+ ++D L+K++
Sbjct: 743 EKKIIQLQKKENTQYIKKILKNVTEIKGTKL-----LTNIFYDYEQKSLRMIVDQLKKEL 797

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           ++  I+++      + ++++ VT +LLD   A+ +  +
Sbjct: 798 KNT-IIILINIINNRFTIIVGVTRNLLDYITAIKIMEM 834


>gi|219682314|ref|YP_002468698.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219622047|gb|ACL30203.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086140|gb|ADP66222.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086713|gb|ADP66794.1| alanyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087298|gb|ADP67378.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087809|gb|ADP67888.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 878

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 315/874 (36%), Positives = 501/874 (57%), Gaps = 69/874 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V TVQ+
Sbjct: 8   IRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRVATVQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F++ Q +
Sbjct: 68  CLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFNIPQNK 127

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177
           L+I+VY +D E +K+W  I  + +++IIRI         ++NFW M +TGPCGPC+EIF+
Sbjct: 128 LWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPCTEIFY 187

Query: 178 DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D  + +    +     +  R++EIWN+VF++F + +K +   L   SIDTGMGLER++ V
Sbjct: 188 DYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLERISAV 247

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   +NY ID+F+ LI+   Q++ +    NN+  ++ +VI DH+RS S++IAD ILP+N
Sbjct: 248 LQNVYSNYHIDVFQKLIKNIAQLSSI----NNLDHISFQVIADHIRSCSYIIADNILPSN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           E RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L+ E
Sbjct: 304 EHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVLKIE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+ C      ID
Sbjct: 364 EMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDV-CREKNIKID 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             S+  A E+Q+ +         S   +K +           +    +L  +   +   K
Sbjct: 422 YNSYELAKEKQKEQ---------SNINKKFY---------KNYNNNIILNDTCIFEGYTK 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            + +           S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD G  
Sbjct: 464 TITR-----------SLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDIGQL 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   +   +K  + I  H   +  G +    SL   ID   R  + +NHSATHLLH
Sbjct: 513 YHKKSSFIVEKTKKYGKTI-GHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T  +
Sbjct: 572 ATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKTEEL 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+S+S
Sbjct: 632 NLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKIISQS 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----------VGRVEEIW 764
           S+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++             +E+  
Sbjct: 687 SVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLEKKI 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            + +K +     +K+  NV ++   K+     +++I  + + K L+ ++D L+K++++  
Sbjct: 747 IQLQKKENTQYIKKILKNVTEIKGTKL-----LTNIFYDYEQKSLRMIVDQLKKELKNT- 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           I+++      + ++++ VT +LLD   A+ +  +
Sbjct: 801 IIILINIINNRFTIIVGVTRNLLDYITAIKIMEM 834


>gi|146321099|ref|YP_001200810.1| alanyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|145691905|gb|ABP92410.1| Alanyl-tRNA synthetase [Streptococcus suis 98HAH33]
          Length = 830

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 326/861 (37%), Positives = 479/861 (55%), Gaps = 73/861 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +T+  G    + ++  L   GK EI   D+ FKLYDT+G  +++ ++
Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462
           +   RG+  +DI  F  A++EQ+ RARA  +  GS G   +   ++ E+  +T   G   
Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L  S                     +S IV    +      EAVS  +  +VFDQTPFYA
Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501

Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           E GGQ+ D G    A GD I   + DVQK   G  +H   +   I     +  L I+ + 
Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ V
Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I   +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV
Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758
            +T EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  
Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813
           +VE + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  
Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFA 794

Query: 814 DALQKKIQSGIIMLVGISKEK 834
           D  ++K  S +++LV    +K
Sbjct: 795 DNWKQKDYSDVLVLVAAIGDK 815


>gi|226366325|ref|YP_002784108.1| alanyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|226244815|dbj|BAH55163.1| alanyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 890

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 309/779 (39%), Positives = 434/779 (55%), Gaps = 53/779 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K  H  +PS+SLI  +DP L+F N+GMV F   F GQ+ P Y   T+VQK
Sbjct: 6   IRRRFLDHFVKAAHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           CVR      D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT   D      D
Sbjct: 65  CVRT----LDIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+++TVY +D+EA  +W+   G+   +I R    DN+WSM   GPCGPCSEI+FD+G 
Sbjct: 121 PERIWVTVYLDDDEARDIWRDEVGVPETRIQRRGMADNYWSMGIPGPCGPCSEIYFDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMAT 235
              G   G   + +RYIEIWNLVFMQ E      + N +    LPK +IDTGMG+ER+A 
Sbjct: 181 EF-GAEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGVERVAF 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E+++G KY  + ++ V  RVI DH R+++ LIADG+ P 
Sbjct: 240 LLQGVDNVYETDLVRPVIAKAEELSGRKYGVDHDDDVRFRVIADHARTAAMLIADGVNPG 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N+GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE     
Sbjct: 300 NDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIETVAVG 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           E+  F KTL  G  L +G    +   GK  I  G+ AF L+DT+G P+D+  ++    GL
Sbjct: 360 EEAAFLKTLTSGSKLFEGAAESVKASGKSTI-GGEQAFALHDTYGFPIDLTLEMAAEAGL 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   + EQR RA+  +        +   +      G T+F G+  L       
Sbjct: 419 T-VDEEGFRALMAEQRQRAKDDAQARKHAHADLTIYKELLDRGPTEFTGFHELVSEAH-- 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A++ QG+ V  A +GQ VEV+ D++P YAEAGGQ+ D
Sbjct: 476 ---------------------VLALISQGQRVPVATAGQDVEVILDRSPLYAEAGGQIAD 514

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHSA 589
            G   G G+R+++ DVQK A+ ++VH   V+ G + TE  +VL  +D   R+  +  HS 
Sbjct: 515 LGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQDGQI-TEGDVVLAQVDAAWRKGATQGHSG 573

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH++H AL  +LG +  Q GS   P  LRFD +    +T A+ + IE   N+ +A +  V
Sbjct: 574 THMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAADYSV 633

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T + + + A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I  + 
Sbjct: 634 NTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIGNVT 689

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           ++ E S+ +G+RR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E  R
Sbjct: 690 LLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLR 748


>gi|254571161|ref|XP_002492690.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115]
 gi|238032488|emb|CAY70511.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115]
          Length = 981

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 334/972 (34%), Positives = 517/972 (53%), Gaps = 106/972 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
           + +R+TF +FF+   H  +PSSS+IP +DPTL+FTN+GM  +K IF G   P       +
Sbjct: 34  NKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFATLK 93

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI   W+LLTK + 
Sbjct: 94  RATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKVYG 153

Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L++ RLY++ +        + D EA + WK + G++ D I+  +  DNFW M + GPCGP
Sbjct: 154 LEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPCGP 212

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   +S   ++    +EIWN+VF+QF ++       LP   IDTGM
Sbjct: 213 CSEIHYDR----IGGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGM 268

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN--------IVNHRVIVDHL 279
           G ER+ ++LQ   +NYD D+F  L    +++TG++ Y G+            +RV+ DH+
Sbjct: 269 GFERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHV 328

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAY 337
           R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L PAL  ++   +
Sbjct: 329 RTLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETF 388

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHG 395
           PE+ +    I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G
Sbjct: 389 PEVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYG 448

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL  ID   F  A E  R  ++      G+G T+      KE     
Sbjct: 449 FPVDLTRLMAEETGLK-IDDEGFEIAKEASREASK------GNGKTQG-----KELVKLD 496

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVE 512
             +  +L + S+  K D            T  + + + AI    E+++   E    Q++ 
Sbjct: 497 VHVLGELEKNSEVPKTDDSYKYG------TKNIEASIVAIYNGKELIQSTSEVADDQQLG 550

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           ++ D+TPFYAE GGQ+ DTG  + DG+    + +VQ  A G  +H   VE G+L     +
Sbjct: 551 ILLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYA-GYVLHTGYVEEGVLSVSDKI 609

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H K +T +E
Sbjct: 610 IAGYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSE 669

Query: 632 LKSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
           L+ +ED  N++I +N+PV    VT  + +E    +G  A+ G  Y D VRVVS+      
Sbjct: 670 LQKVEDISNEVIKKNVPVFASDVTLAVGKE---INGLRAVFGETYPDPVRVVSIGVPVEE 726

Query: 682 ---EYEDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 +   H++++  CGGTHV+ TG+I    I+ ES I  GIRRI A+T   A +   
Sbjct: 727 LVKNPSNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQR 786

Query: 737 GQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQL-IHAKRKLQL---NVE-----DL 786
              EK   L +  K+S G     +++E      KLQ+ + AK  L+    N+E     +L
Sbjct: 787 IAREKNDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVKDEL 846

Query: 787 SCHKIADVN------------------FMSHIISEVDSKELKSVMDALQKKI-QSGIIML 827
              + A+                    F++H+    ++K L      ++K+I    + ++
Sbjct: 847 KVRQKAESKKTLDTVKDYFNEHEDSPFFVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLI 906

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           VG   E K +    V+++ L +   A ++  ++++ +GG  GG + ++ Q  G N    +
Sbjct: 907 VGNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFIGGKAGG-KGNICQGVGTNPEGIN 965

Query: 887 QAIAGVASFLKK 898
           +AI  V   LK+
Sbjct: 966 KAIEAVTKILKE 977


>gi|226306472|ref|YP_002766432.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|226185589|dbj|BAH33693.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 890

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 310/780 (39%), Positives = 434/780 (55%), Gaps = 55/780 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMVPF   F GQ+ P Y   T+VQK
Sbjct: 6   IRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR      D++ VG T RH+TFF+M GNFSFG YFK+ AI  AW LLT       + +D
Sbjct: 65  CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDGGYGID 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY +D+EAF +W+   G+  ++I R    DN+WSM   GPCGPCSEIF+D+G 
Sbjct: 121 PTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIFYDRGA 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E+    NK +  IL   PK +IDTGMG+ER+A
Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292
            +LQ   N Y+ DL + +I  + ++TG  Y  ++   V  RVI DH R+++ LIADG+ P
Sbjct: 239 FLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIADGVNP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            N GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE    
Sbjct: 299 GNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIENVAV 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            E+  F KTL  G  L +     +   GK  ++ GD AF L+DT+G P+D+  ++    G
Sbjct: 359 GEETAFLKTLASGSALFENAAETVKSSGK-SVIAGDQAFALHDTYGFPIDLTLEMASEAG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D   F   + EQR RA+  +        +   +      GAT+F G+D L      
Sbjct: 418 LT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVSEAH- 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                                 V A++  G  V  A +GQ VEV+ D++P YAE+GGQ+ 
Sbjct: 476 ----------------------VLALIVDGVRVPVAKAGQDVEVILDRSPLYAESGGQIA 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588
           D G     G+  ++ DVQK A+ ++ H   V++G + TE  +VL  +D + R+  +  HS
Sbjct: 514 DIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEI-TEGDVVLAHVDAEWRKGATQGHS 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            TH++H AL  +LG +  Q GS   P  LRFD +    ++ ++ + IE   N+ +A N  
Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASNYA 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T + + + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I  +
Sbjct: 633 VNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIGQV 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ E S+ +GIRR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E  +
Sbjct: 689 TLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLK 748


>gi|227875429|ref|ZP_03993570.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|227843983|gb|EEJ54151.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
          Length = 894

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 306/880 (34%), Positives = 470/880 (53%), Gaps = 58/880 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   T+
Sbjct: 3   TAEIRQRWLDYFAANGHEVRPSVSLI-SPDPSILFTIAGMVPFIPYIVGTETAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118
           VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      ++
Sbjct: 62  VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEGKY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI +D
Sbjct: 118 GLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIHYD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G +  P G P    +G+R++E+WNLVF +F   E + K    +  L + +IDTG+GLER
Sbjct: 178 RGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           +A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI DG
Sbjct: 238 LAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIGDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I +
Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTISD 357

Query: 350 TLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  A 
Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEI-AAE 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDLLR 464
               +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY    
Sbjct: 417 AKVKVDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY---- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+Q G+ V  A +   +EV+ D+TPFYAEA
Sbjct: 473 -------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYAEA 513

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R  +
Sbjct: 514 GGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRGAI 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+ +
Sbjct: 574 ARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANERL 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V+   M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  TG
Sbjct: 634 RANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPLTG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I  L ++ E S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+  +
Sbjct: 690 AIGSLMVLGEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERITSM 749

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E  +  +    K +L   + +L         I    F+   +S     +L+     L+ 
Sbjct: 750 MERLKAAEKELEKTRLAALLSNLDNYVALAQNICGTKFICQSVSAGSVDDLRQAATQLRG 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +      ++V +  + K   ++VV  +   R   V    L
Sbjct: 810 RFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGAL 849


>gi|312139552|ref|YP_004006888.1| alanine-tRNA ligase alas [Rhodococcus equi 103S]
 gi|311888891|emb|CBH48204.1| alanine-tRNA ligase AlaS [Rhodococcus equi 103S]
          Length = 890

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 302/781 (38%), Positives = 438/781 (56%), Gaps = 51/781 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV FK  F GQ+ P Y   T+VQK
Sbjct: 6   IRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR G    D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT       +  D
Sbjct: 65  CVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY +D+EA  +WK+ +G+  ++I R    DN+WSM   GPCGPCSEI++D+G 
Sbjct: 121 PERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMAT 235
              G   G   + +RY+EIWNLVFMQ E  +   ++ F     LPK +IDTGMG+ER+A 
Sbjct: 181 EY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGVERVAF 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E+++G  Y  +    V  RVI DH R++  LIADG+ P 
Sbjct: 240 LLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIADGVNPG 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YPEL      I      
Sbjct: 300 NEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIVGVAVG 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+  F +T+  G  + +     +     ++  G+ AF L+DT+G P+D+  ++    GL+
Sbjct: 360 EETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAAEAGLS 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   + EQR RA+  +       T+   +      GAT+F G++ L        
Sbjct: 420 -VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVSEAH--- 475

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A++  G  V  A +GQ VEV+ D++P YAE+GGQ+ D 
Sbjct: 476 --------------------VLALISNGVRVPAATAGQDVEVILDRSPLYAESGGQIADI 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHSAT 590
           G    +G+R+++ DVQK A+ ++VH   V  G + TE  +VL  +D + R+  +  HS T
Sbjct: 516 GTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQI-TEGDVVLVQVDPEWRKGATQGHSGT 574

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++H AL  +LG +  Q GS   P  LRFD      ++ ++ + IE   N+ +A N  V 
Sbjct: 575 HMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAANHAVN 634

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + + A   GA AL G  Y D VRVV +    GG  S  LCGGTHV ++ +I  + +
Sbjct: 635 TFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIGPVTL 690

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V GRVE + E  +  
Sbjct: 691 LGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVERLKAA 750

Query: 771 Q 771
           +
Sbjct: 751 E 751


>gi|328353302|emb|CCA39700.1| alanyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 959

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 334/972 (34%), Positives = 517/972 (53%), Gaps = 106/972 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
           + +R+TF +FF+   H  +PSSS+IP +DPTL+FTN+GM  +K IF G   P       +
Sbjct: 12  NKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFATLK 71

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI   W+LLTK + 
Sbjct: 72  RATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKVYG 131

Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L++ RLY++ +        + D EA + WK + G++ D I+  +  DNFW M + GPCGP
Sbjct: 132 LEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   +S   ++    +EIWN+VF+QF ++       LP   IDTGM
Sbjct: 191 CSEIHYDR----IGGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGM 246

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN--------IVNHRVIVDHL 279
           G ER+ ++LQ   +NYD D+F  L    +++TG++ Y G+            +RV+ DH+
Sbjct: 247 GFERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHV 306

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAY 337
           R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L PAL  ++   +
Sbjct: 307 RTLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETF 366

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHG 395
           PE+ +    I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G
Sbjct: 367 PEVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYG 426

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL  ID   F  A E  R  ++      G+G T+      KE     
Sbjct: 427 FPVDLTRLMAEETGLK-IDDEGFEIAKEASREASK------GNGKTQG-----KELVKLD 474

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVE 512
             +  +L + S+  K D            T  + + + AI    E+++   E    Q++ 
Sbjct: 475 VHVLGELEKNSEVPKTDDSYKYG------TKNIEASIVAIYNGKELIQSTSEVADDQQLG 528

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           ++ D+TPFYAE GGQ+ DTG  + DG+    + +VQ  A G  +H   VE G+L     +
Sbjct: 529 ILLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYA-GYVLHTGYVEEGVLSVSDKI 587

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H K +T +E
Sbjct: 588 IAGYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSE 647

Query: 632 LKSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
           L+ +ED  N++I +N+PV    VT  + +E    +G  A+ G  Y D VRVVS+      
Sbjct: 648 LQKVEDISNEVIKKNVPVFASDVTLAVGKE---INGLRAVFGETYPDPVRVVSIGVPVEE 704

Query: 682 ---EYEDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 +   H++++  CGGTHV+ TG+I    I+ ES I  GIRRI A+T   A +   
Sbjct: 705 LVKNPSNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQR 764

Query: 737 GQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQL-IHAKRKLQL---NVE-----DL 786
              EK   L +  K+S G     +++E      KLQ+ + AK  L+    N+E     +L
Sbjct: 765 IAREKNDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVKDEL 824

Query: 787 SCHKIADVN------------------FMSHIISEVDSKELKSVMDALQKKI-QSGIIML 827
              + A+                    F++H+    ++K L      ++K+I    + ++
Sbjct: 825 KVRQKAESKKTLDTVKDYFNEHEDSPFFVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLI 884

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           VG   E K +    V+++ L +   A ++  ++++ +GG  GG + ++ Q  G N    +
Sbjct: 885 VGNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFIGGKAGG-KGNICQGVGTNPEGIN 943

Query: 887 QAIAGVASFLKK 898
           +AI  V   LK+
Sbjct: 944 KAIEAVTKILKE 955


>gi|311064194|ref|YP_003970919.1| alanyl-tRNA synthetase AlaS [Bifidobacterium bifidum PRL2010]
 gi|310866513|gb|ADP35882.1| AlaS Alanyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 892

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 342/922 (37%), Positives = 511/922 (55%), Gaps = 78/922 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ + +
Sbjct: 3   TSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT       +
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231
           +G E    G P + E   R+IEIW+LVF  +E  N + +  L       + +IDTG GLE
Sbjct: 177 RGPEYGKDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++DG
Sbjct: 235 RLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + E
Sbjct: 295 VRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVSE 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +   E++ F +TLD G+ +LD  ++   K  D +++GD AF L+DT+G P+++  ++   
Sbjct: 355 SAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAAD 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G+  +D   F + + EQ+SRARA +L              K+++     +  D      
Sbjct: 415 QGVK-VDEAKFRELMSEQKSRARADAL--------------KKRHNVDLSVYDDF----- 454

Query: 468 FMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYA 522
                +K L Q  PID            V  I+Q+G+    AVS    VEV+ D+TPFYA
Sbjct: 455 -----KKTLVQ--PIDFLGYTDMSARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYA 507

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +  +ID   R 
Sbjct: 508 EAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRG 567

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND
Sbjct: 568 AIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVND 627

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V T  M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV  
Sbjct: 628 RLRDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDH 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV 
Sbjct: 685 VGKIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVN 744

Query: 762 ----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL--KSV 812
               ++ E  R+L  ++ + +L  +V  L   +    A V   +  +    S +   K+V
Sbjct: 745 TLLAKLKESDRRLAAMY-EGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTV 803

Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDRFNAV---DLARLSAKVLGGGG 867
           MD   +  +    ++ L G+S++ K  V +   E  + R N +   DL R ++K+L GGG
Sbjct: 804 MDVRAQLGEDAPVVVALAGVSEDDKPMVAVATNE--VARKNGIKAGDLVRGASKML-GGG 860

Query: 868 GGGRPHMAQSGGPNGNKADQAI 889
           GGG+P  AQ GG + ++ D+A+
Sbjct: 861 GGGKPDFAQGGGSDASRIDEAL 882


>gi|27904852|ref|NP_777978.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427399|sp|P59420|SYA_BUCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27904250|gb|AAO27083.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 880

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 313/866 (36%), Positives = 483/866 (55%), Gaps = 62/866 (7%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-YQAVTTVQKCVR 69
           FL FF K GH +LP S+LIP NDP+L+FTNSGM  FK+IF  +     Y  VTT+Q C+R
Sbjct: 12  FLNFFYKKGHTILPGSTLIPNNDPSLLFTNSGMNQFKDIFIQKNYNFKYNRVTTLQNCLR 71

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127
            GGKHND +NVG T +HHTFF+MLGNFSF  YFK  AI  AW  LT  ++ +L + +L+I
Sbjct: 72  TGGKHNDFENVGYTPQHHTFFQMLGNFSFRDYFKLDAILYAWKFLTSKEQLNLSKEKLWI 131

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFDQGE 181
           TVY +D E++ +WK I  +   KII+I      + +DNFW M E GPCGPC+EIF+D G 
Sbjct: 132 TVYQDDLESYNIWKNIIKIDKHKIIKIGNKYNSSDSDNFWQMGEIGPCGPCTEIFYDYGN 191

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PG +PG++     R++EIWN+VF+QF + +  +   L +  +DTGMGLER++ V+   
Sbjct: 192 TLPGTIPGNNGCNVPRFVEIWNIVFIQFNKLSNGKLIKLTESYVDTGMGLERISAVINNV 251

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           T+NY+IDLFK LI+   +++ +    N  +   VI DH+R+ SF+I++ I+P+NE  GYV
Sbjct: 252 TSNYEIDLFKPLIKHILELSTVNTPKNKSI--YVIADHIRACSFIISENIIPSNEKHGYV 309

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG     +  L+P L   MG   P L + +  IE  L+ E+++F +
Sbjct: 310 LRRIIRRAIRHGHNLGIKSLFLHKLIPTLINTMGKFNPVLKKQQNKIENVLKLEEQKFIE 369

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL   L  +    +L+G +AF LYDT G P+D+  DI C      I+I+ F +
Sbjct: 370 TLEKGLKLLHKELKQIQPKHVLSGKLAFNLYDTFGFPIDLTIDI-CKEHNISINIMEFKR 428

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            L + +  +   +      T    +         T F+GY                    
Sbjct: 429 YLNQHKQNSINKNF---LNTRNAYYIEDNNINIKTHFVGYQF------------------ 467

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF-DQTPFYAEAGGQLGDTGCAIGDGI 539
                N   SI+  I+ +       ++  +  ++F ++TPFY E+GGQ+GD+G  I +  
Sbjct: 468 -----NKTQSIINNIIIKNNKKTLQINDYQNSILFLNETPFYGESGGQIGDSGI-IHNKT 521

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              I +  K    I  H   +  G L    ++   I+   R+ + INH+ATHLLH +L  
Sbjct: 522 GKFIVNCTKMFGNIIGHVGTLASGYLNIHDTVCAEINLPKRKSIQINHTATHLLHASLRK 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV Q GS I+   L+FD +H+ P+   E++ +E+ +N  I +N+ V T +   ++ 
Sbjct: 582 ILGKHVFQKGSFISDQSLKFDFSHNAPMNLREIQEVENIINKKIQKNISVSTTLTTLQEI 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 AL   KY D+VR++S+        S  LCGGTH   TG+I L  I SE SI +G
Sbjct: 642 QNKKVMALFQDKYKDKVRMISI-----NDFSVELCGGTHTKYTGDIGLFKITSEISISSG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+TG+ A S +  Q++ + ++A+ L     N+   + ++         IH K+++
Sbjct: 697 IRRIEAVTGKHAISIIHHQEKTINNIANMLNSKTNNIEQTITKLLNNN-----IHLKKQI 751

Query: 780 QL--------NVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                      V  LS H   I DVN +   +   +   L++++D L+ + +   ++++ 
Sbjct: 752 YTLYNQNIYNIVNSLSKHNILIKDVNIIIKNLKNENLLSLRNIVDKLKNRFKCS-VIIIS 810

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL 855
                K+ +++ VT ++ DR +A+D+
Sbjct: 811 SIINNKSIIIVGVTRNVTDRISALDI 836


>gi|325672564|ref|ZP_08152260.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556441|gb|EGD26107.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 890

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 302/781 (38%), Positives = 438/781 (56%), Gaps = 51/781 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV FK  F GQ+ P Y   T+VQK
Sbjct: 6   IRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR G    D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT       +  D
Sbjct: 65  CVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY +D+EA  +WK+ +G+  ++I R    DN+WSM   GPCGPCSEI++D+G 
Sbjct: 121 PERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMAT 235
              G   G   + +RY+EIWNLVFMQ E  +   ++ F     LPK +IDTGMG+ER+A 
Sbjct: 181 EY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGVERVAF 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   N Y+ DL + +I  +E+++G  Y  +    V  RVI DH R++  LIADG+ P 
Sbjct: 240 LLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIADGVNPG 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YPEL      I      
Sbjct: 300 NEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIVGVAVG 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+  F +T+  G  + +     +     ++  G+ AF L+DT+G P+D+  ++    GL+
Sbjct: 360 EETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAAEAGLS 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   + EQR RA+  +       T+   +      GAT+F G++ L        
Sbjct: 420 -VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVSEAH--- 475

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A++  G  V  A +GQ VEV+ D++P YAE+GGQ+ D 
Sbjct: 476 --------------------VLALISNGVRVPTATAGQDVEVILDRSPLYAESGGQIADI 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHSAT 590
           G    +G+R+++ DVQK A+ ++VH   V  G + TE  +VL  +D + R+  +  HS T
Sbjct: 516 GTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQI-TEGDVVLVQVDPEWRKGATQGHSGT 574

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++H AL  +LG +  Q GS   P  LRFD      ++ ++ + IE   N+ +A N  V 
Sbjct: 575 HMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAANHAVN 634

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + + A   GA AL G  Y D VRVV +    GG  S  LCGGTHV ++ +I  + +
Sbjct: 635 TFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIGPVTL 690

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V GRVE + E  +  
Sbjct: 691 LGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVERLKAA 750

Query: 771 Q 771
           +
Sbjct: 751 E 751


>gi|320093740|ref|ZP_08025599.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979325|gb|EFW10816.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 918

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 309/832 (37%), Positives = 451/832 (54%), Gaps = 68/832 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S IR+ +LEFF    HE+ PS  LI   +P+++FT +GMVPF     G E   +  
Sbjct: 19  LMRTSEIRSRWLEFFAARDHEIRPSVPLI-SPEPSILFTVAGMVPFIPYILGTEPAPWPR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD- 119
             +VQKCVR     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW LLT   D 
Sbjct: 78  AASVQKCVRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDFAWHLLTDPRDQ 133

Query: 120 ----LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               LD  RL++T+++ED+ +F  W +  GL A++I R+   +  WS  + GP G C EI
Sbjct: 134 GGYGLDGDRLWMTIWEEDQVSFDYWTREIGLPAERIQRLPFAEISWSTGQPGPAGSCCEI 193

Query: 176 FFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMG 229
            +D+G +  PGG P     G+R++EIWNLVF +F   E        +  L + +IDTG G
Sbjct: 194 HYDRGAQYGPGGGPVVDTGGDRFLEIWNLVFDEFVRGEGAGHDFELVGKLDRTAIDTGAG 253

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDH 278
           LER+A ++Q+K N Y+ID    +I A+E ++G  Y              + V  RV+ DH
Sbjct: 254 LERLAFIMQDKPNMYEIDEVFPVIAAAEAMSGKTYGLGAAGPEAGEAYADDVRLRVVADH 313

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +RSS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  +  M  LL A    M ++YP
Sbjct: 314 VRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVHDAAMPVLLTASKDAMRASYP 373

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397
           EL      I E   +E++ F +TL  G  +LD  ++        + G  AF L+DT+G P
Sbjct: 374 ELEADWGTISEVAYAEEDAFRRTLSAGTTILDTAVAQARSAGSPIPGASAFSLHDTYGFP 433

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GAT 455
           +D+  ++   +G+  +D   F   +EEQ+ RARA +    +G T+   F   EK   G +
Sbjct: 434 IDLTLEMAAEQGVK-VDEDGFRALMEEQKERARADARAKKTGHTDVRVFQEIEKRLGGGS 492

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GY                         +G  + V A++  G     A +G  VEVV 
Sbjct: 493 EFLGY-----------------------TESGCDASVVALLVDGHDAPAAQAGADVEVVL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQL D G    +G   +++ DVQ    G+FVH   V  G +         
Sbjct: 530 DRTPFYAEMGGQLADHGTIRAEGGAVIEVNDVQAPIRGLFVHRGTVVEGAVAVGERAFAQ 589

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R  ++  H+ATH+++  L  ++G   SQ GS  +P  LRFD  HS  + ++++  
Sbjct: 590 IDTRRRLAIARAHTATHMVYAGLRAVVGQDASQAGSENSPSRLRFDFRHSSALGASQVDD 649

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ +A++LPV T +M  E+A ASGA AL G KY  RVRVV++    G      LC
Sbjct: 650 IEALVNEKLAEDLPVTTEVMGIEEARASGAIALFGEKYGSRVRVVTI----GDGFDKELC 705

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV STG +  + ++ E SI +G+RRI+A+ G  A  +   +   +  LAS       
Sbjct: 706 GGTHVPSTGHLGRVTVLGEGSIGSGVRRIDALVGDGAYEYQAKEHAIVSRLASL------ 759

Query: 755 NVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            V GR E++ E    L  +L  ++++L+ +  D +  + A +   +  I  +
Sbjct: 760 -VGGRPEDLPERVEALLARLKESEKELEKSRIDQALSQAAGLAARAKTIGRL 810


>gi|225011405|ref|ZP_03701843.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225003908|gb|EEG41880.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 870

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 315/820 (38%), Positives = 457/820 (55%), Gaps = 70/820 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL+FF+   H+++PS+ ++  NDPTLMFTN+GM PFK  F G   P  + VT  QK
Sbjct: 6   VRQQFLDFFESKKHKVVPSAPMVIKNDPTLMFTNAGMNPFKEYFLGNAVPSSKRVTDTQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK+ AI+ AW+LLT+ + +D  +LY
Sbjct: 66  CLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTEVYKIDPNKLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        ++D EAF  WK I  L  ++I+     DNFW M + GPCGPCSEI  D
Sbjct: 126 VTIFEGAPEEGIEKDNEAFDFWKAI--LPEERILLGNKQDNFWEMGDQGPCGPCSEIHVD 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + E     + G+   +++  + IE+WNLVF++F ++       LP+  IDTGMG ER+ 
Sbjct: 184 IRSEEEKAKVSGAELVNQDHPQVIEVWNLVFIEFNRKANGSLEKLPEKHIDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILP 292
            VLQ  T+NYD D+F  LI+  E +T   Y      +   RVI DH+R+  F IADG LP
Sbjct: 244 MVLQNTTSNYDTDVFTPLIREIETLTKSTYGEKQDTDRAIRVIADHIRTVYFAIADGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+A+PELI+ + L    +
Sbjct: 304 SNNGAGYVIRRILRRAIRYGFTFLNQKEPFIHLLVNTLSQQMGTAFPELIREQQLAFNVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+  F KTLD+GLVLL+ ++++  K + ++G   F+LYDT G P D+   I   +G +
Sbjct: 364 REEENSFLKTLDQGLVLLESLITN-SKSKKIDGSKVFELYDTFGFPFDLTALIAGEKGFS 422

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E Q+ R+RA +           W  L+E     +F+GYD L        
Sbjct: 423 -VDEEGFQKAMEVQKKRSRAAAASKAGD-----WVILQED-NVEEFVGYDHLS------- 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               VK  + +   +  A  G   ++VF+ TPFY E GGQ+GD 
Sbjct: 469 --------------------VKVKITRYRKMTTAKEGDFYQLVFNLTPFYPEGGGQVGDK 508

Query: 532 G-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSA 589
           G     +G    + D  KK   + VH     + I  + E +    +D + R++ S NH+A
Sbjct: 509 GYLEASNGDIFYVLDT-KKENNLIVHQT---KSIPSKLESTFTAVVDPKQRQRSSSNHTA 564

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL ++LG+HV Q GS +     RFD +H   +T+ ELK++E  VN  I + +P+
Sbjct: 565 THLMHQALRSVLGNHVEQKGSMVHSGMFRFDFSHFAKVTAEELKAVEQFVNARIQEGIPL 624

Query: 650 VT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              R      AI  GA AL G KY D VR +          S  LCGGTHV++T  I   
Sbjct: 625 EEGRNTPYNSAIKEGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVANTAVIWHF 678

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES++ +GIRRIEAITG  A+ +   Q   L+++   LK +Q + +  ++ +  E  
Sbjct: 679 KITSESAVASGIRRIEAITGDAAKKYFEEQTSLLENVNELLKQAQ-DPLKAIQSLQSENT 737

Query: 769 KLQL---IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
            L+    + +K K Q+  +DL   KI  ++ +    SEVD
Sbjct: 738 ALKKELSVLSKLKTQILKDDL-LQKIKTIDGIQFAASEVD 776


>gi|212550874|ref|YP_002309191.1| alanyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549112|dbj|BAG83780.1| alanyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 872

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 329/915 (35%), Positives = 482/915 (52%), Gaps = 100/915 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +F ++F+   H+++ SS +I  NDPTLMFTN+GM  FK++  G     Y  +  VQK
Sbjct: 6   IRQSFKDYFENKNHKIVSSSPMIIKNDPTLMFTNAGMNQFKDVILGNALVKYTRIANVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ LT+   LD+ RLY
Sbjct: 66  CLRVNGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEYAWEYLTEILKLDKDRLY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        + D EA   W K   L    II     DNFW M   GPCGPCSEI  D
Sbjct: 126 VTIFEGNSSEKLERDNEAANYWGKY--LPKSHIIDGNKKDNFWEMGNMGPCGPCSEIHID 183

Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                + E +   L   ++   + IEIWNLVFMQF ++       LP+  IDTGMG ER+
Sbjct: 184 IRSDEEREKV-DSLTLINKNHPQVIEIWNLVFMQFNRKIDGSLENLPQKVIDTGMGFERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
             V+Q K +NYD D+F+ +IQA   +T   Y  N+   +  RV+ DH+R+ +F IADG L
Sbjct: 243 CMVVQGKASNYDTDVFQTIIQAISTITKFSYGQNSQRDIAIRVVADHIRTIAFSIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N   GYV+RRI+RRA+ Y+   L      +  L+P+L   MG  YPELI  K ++++ 
Sbjct: 303 PSNTKAGYVIRRILRRAVRYSYTFLEQKRAFIYRLIPSLVDSMGEVYPELIAQKKMMQKV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+  F +TL+ G  LL+  +  +       +NG   F LYDT+G PLD+++ IL  +
Sbjct: 363 IKEEENSFLQTLEIGTKLLNKKIQEAKTKNKTTINGVDVFILYDTYGFPLDLIKLILHEQ 422

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            +  +D  SF+  + +Q+ RAR A ++  G       W  L+E  G TQF+GYD +    
Sbjct: 423 NMK-MDKASFDAEMSKQKERARNATTIETGD------WIVLQE--GDTQFVGYDTI---- 469

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
              + R + C+K                V+Q        + +  ++V D+TPFYAE GGQ
Sbjct: 470 -TTQARILRCRK----------------VKQK-------NTEYYQIVLDKTPFYAEMGGQ 505

Query: 528 LGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           +GD+G  I  +GI + I D   K E   V H I+ +       +    +D + RR    N
Sbjct: 506 IGDSGQLIDSNGISISIIDT--KCENNLVIH-IINQLPENLYDTFNAEVDARKRRATECN 562

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+HV Q GS ++ + LRFD +H K +T  E++ +E  +   I QN
Sbjct: 563 HTATHLLHEALRLVLGTHVEQKGSYVSSEVLRFDFSHFKKVTEKEIRQLEKIITKKIRQN 622

Query: 647 LPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + +   R +   +A   GA AL   KY + VRV+          S  LCGGTH +STG I
Sbjct: 623 IALEEKRHIPLVEARRLGAIALFYEKYEENVRVIKFG------SSIELCGGTHTTSTGYI 676

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS-----------LASFLKVSQG 754
               I+SE SI AGIRRIEAIT ++  S    Q + + +           L S  K+   
Sbjct: 677 GNFRIISEFSISAGIRRIEAITAEKVESFFYAQQDIIHNAKMLLNHTSDLLQSIKKLISE 736

Query: 755 NVV--GRVEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           N++   +VE    E   + K Q+I  K++    +           + +  I  ++ S+  
Sbjct: 737 NILLKKQVETYNREKTIFIKNQVIKTKKQTPSGINLFILEGFFPASIVKDIAFQIGSEFT 796

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +    A                 E K  + I+++ DL+    NA  + R ++K++  G G
Sbjct: 797 EKSYFA------------AATVAEGKPLLTIMISNDLVKNGLNASQIVREASKII-KGNG 843

Query: 869 GGRPHMAQSGGPNGN 883
           GG+ H A +GG + N
Sbjct: 844 GGQSHFATAGGKDIN 858


>gi|305666370|ref|YP_003862657.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88708362|gb|EAR00599.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 871

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 332/922 (36%), Positives = 502/922 (54%), Gaps = 81/922 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  FL+FF+   H+++PS+ ++  +DPTLMFTN+GM  FK  F G        + 
Sbjct: 2   NSKEIRAQFLDFFETKKHKIVPSAPMVIKDDPTLMFTNAGMNQFKEFFLGNSVAKSPRMA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFK+ AI+ AW+LLT +  +D+
Sbjct: 62  DTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTDKLQIDK 121

Query: 123 RRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             LY++V+         + D EA++LW  I  +  D+II     DNFW M + GPCGPCS
Sbjct: 122 DSLYVSVFEGSKDSDNLEMDNEAYELWSGI--VPKDRIIMGNKKDNFWEMGDQGPCGPCS 179

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +++    +EIWNLVFMQ+ ++       LP+  +DTGMG
Sbjct: 180 EIHVDIRPAEEKAETSGAFLVNQDHPLVVEIWNLVFMQYNRKADGALEPLPEKHVDTGMG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287
            ER+  VLQ   +NYD D+F  +I+  E +T   Y  N  ++   RVI DH+R+ +F IA
Sbjct: 240 FERLCMVLQGVQSNYDTDVFTPIIREIETITNADYGKNEEIDIAIRVIADHIRAVAFSIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG+A+PEL   + L
Sbjct: 300 DGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTETMGNAFPELKDQRQL 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  ++ E+  F  TL++GLVLLD ++S   K +++ G  AF+LYDT+G P+D+   IL 
Sbjct: 360 IENVVKEEENSFLNTLEQGLVLLDNLVSK-AKGKVVQGRKAFELYDTYGFPIDLTALILE 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G   +D   F++A++EQ+ R+R+      S   ++ W  L +     +F+GYDLL  +
Sbjct: 419 EKGYT-LDEKGFHEAMKEQKDRSRS-----ASEIAKEDWMVLSDD-SEQEFVGYDLLETN 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RKV  +K                            G++ ++VF+ TPFY E GG
Sbjct: 472 VKLVKYRKVTSKK---------------------------EGEQYQMVFNLTPFYPEGGG 504

Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLS 584
           Q+GD G     +G  + I D +K+   I VH A   + + + T  +    +D + R++ +
Sbjct: 505 QVGDKGYLEAPNGDVVYILDTKKENNEI-VHFA---KNLPKSTSDTFKAVVDKKQRQRTA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I 
Sbjct: 561 ANHTATHLLHQALREVLGNHVEQKGSAVHSKYLRFDFSHFSKMTVEELREVENFVNARIE 620

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             LP+   R +  E+A+  GA AL G +Y + VR +          S  LCGG HV  T 
Sbjct: 621 GQLPLDENRSVPMEEALKGGAMALFGEEYGETVRTIRFG------QSMELCGGAHVKITS 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I SE ++ AGIRRIEAIT    +      +  L  +   L  +Q N V  V+ +
Sbjct: 675 DIWHFKIKSEGAVAAGIRRIEAITYDAVKDFYFHNNRSLFEIKDLLNNAQ-NPVNAVKAL 733

Query: 764 WEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDAL 816
            +E  KL     QL+  K K   N++     ++ +VN +  +  +V  D+  +K +   +
Sbjct: 734 QDENAKLKKEVEQLLKDKAK---NLKGDLLAELKEVNGIQFLAKKVDLDAAGIKDLSFEM 790

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM 874
               ++ + +L G  +  KA +   ++++L+     NA  + R   K +  GGGGG+P  
Sbjct: 791 GNN-KNNLFLLFGTEQNGKALLSCYISKELVAEKNLNAGTIVRELGKCI-QGGGGGQPFF 848

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           A +GG N    ++A++    +L
Sbjct: 849 ATAGGKNPAGIEEALSKAEEYL 870


>gi|224282910|ref|ZP_03646232.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140069|ref|ZP_07802262.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132579|gb|EFR50196.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 892

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 341/920 (37%), Positives = 508/920 (55%), Gaps = 74/920 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ + +
Sbjct: 3   TSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT       +
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQPEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231
           +G E    G P + E   R+IEIW+LVF  +E  N + +  L       + +IDTG GLE
Sbjct: 177 RGPEYGKDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++DG
Sbjct: 235 RLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + E
Sbjct: 295 VRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVSE 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +   E++ F +TLD G+ +LD  ++   K  D +++GD AF L+DT+G P+++  ++   
Sbjct: 355 SAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAAD 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G+  +D   F + + EQ+SRARA +L              K+++     +  D      
Sbjct: 415 QGVK-VDEAKFRELMSEQKSRARADAL--------------KKRHNVDLSVYDDF----- 454

Query: 468 FMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYA 522
                +K L Q  PID            V  I+Q+G+    AVS    VEV+ D+TPFYA
Sbjct: 455 -----KKTLVQ--PIDFLGYTDMSARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYA 507

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +  +ID   R 
Sbjct: 508 EAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRG 567

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND
Sbjct: 568 AIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVND 627

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V T  M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV  
Sbjct: 628 RLRDNLIVTTTEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHVDH 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV 
Sbjct: 685 VGKIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVN 744

Query: 762 ----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL--KSV 812
               ++ E  R+L  ++ + +L  +V  L   +    A V   +  +    S +   K+V
Sbjct: 745 TLLAKLKESDRRLAAMY-EGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTV 803

Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           MD   +  +    ++ L G+S++ K  V +   E        A DL R ++K+L GGGGG
Sbjct: 804 MDVRAQLGEDAPVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKML-GGGGG 862

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           G+P  AQ GG + ++ D+A+
Sbjct: 863 GKPDFAQGGGSDASRIDEAL 882


>gi|331697330|ref|YP_004333569.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952019|gb|AEA25716.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 887

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 334/912 (36%), Positives = 495/912 (54%), Gaps = 63/912 (6%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           F + F   GH  + S+SLI  +DPTL+F N+GMV FK  F G     Y   T++QKCVR 
Sbjct: 10  FTDHFTGTGHTRVASASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRATSIQKCVRT 68

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125
           G    D+D VGRT RH+TFF+M GNFSFG YFKE AI+ AW L+T       + LD  R+
Sbjct: 69  G----DIDEVGRTTRHNTFFQMAGNFSFGDYFKEGAIEHAWRLITSSTSDGGYGLDPDRI 124

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           ++TV+ +D+EA  LW++I+G+ A++I R    DN+WSM   GPCGPCSEI++D+G    G
Sbjct: 125 WVTVFHDDDEAAGLWQRIAGIPAERIQRRGMADNYWSMGVAGPCGPCSEIYYDRGPQY-G 183

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERMATVLQE 239
              G   + +RY+EIWNLVFM+ E+     ++ F     LP  +IDTG+G+ER+A +LQ 
Sbjct: 184 REGGPVVDEDRYLEIWNLVFMEKERAAGGTKDDFPIIGELPAKNIDTGLGIERVAYLLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N Y+ DL + +I  +E+++G +Y  +  + V  RVI DH RS   +I DG+ P+N+GR
Sbjct: 244 VDNVYETDLVRPVITRAEELSGRRYGASHEDDVRFRVIADHARSGVMIIGDGVTPSNDGR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR +  +RLLG  EP++      +  EM  +YPEL+     I   +R+E+E 
Sbjct: 304 GYVLRRLLRRIVRSSRLLGVQEPVLGAFAEVVRDEMAPSYPELVTDFERISAVVRAEEEA 363

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G  + D  ++   +     L GD AF+L+DT+G P+D+  ++    GL  +D 
Sbjct: 364 FLQTLTAGSRIFDVAVADTRRAGGTTLAGDQAFQLHDTYGFPIDLTLEMAAEAGLT-VDQ 422

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F   + EQR+RA+A +    +G  +  ++  L + +G T F+GY  L           
Sbjct: 423 DRFAALMTEQRTRAKADAAARKTGHHDGSVYRPLLDAHGTTTFLGYTEL----------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V  +V  G  V  A  GQ+VEVV D+TPFYAEAGGQ  D G  
Sbjct: 472 ------------AAEGTVVGLVVDGAAVPAASEGQQVEVVLDRTPFYAEAGGQQADHGVL 519

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 ++I DVQ    G+ VH   VE G +  + ++V  +D   R  +S  H+ATHL+H
Sbjct: 520 RTGSAIVRIDDVQSPVAGLRVHRGTVEAGTVAVDDAVVAEVDVARRASISRAHTATHLVH 579

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             +   LG+  +Q GS   P  LRFD T  S  + +A L  IE+ VN  + +N  V T  
Sbjct: 580 AGVRGALGTAAAQAGSLNAPGRLRFDFTSPSGAVPAAALAEIEEEVNTKLQENREVETYE 639

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + ++A   GA  L G KY DRVRVV     D G +S  LCGGTHV+ TGE+ ++ ++SE
Sbjct: 640 TSMDEARRLGAMMLFGEKYGDRVRVV-----DMGDYSRELCGGTHVARTGELGIVKVLSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +SI +G+RR+EA+ G  A   +  +   L  ++  LK     +  R+  + E  R  +  
Sbjct: 695 ASIGSGVRRVEALVGNDALRQVSTEHLLLSQISDQLKARPDELPDRIAALVERLRTAERD 754

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMS-HIISEVDSKELKSVMDALQKKI--QSGII 825
             K +                 +A +  ++    + V   +L+++   ++ ++  + G++
Sbjct: 755 LEKHRADAALGAAGALADGAEDVAGIALVAVAAPAGVSGNDLRALAADVRGRLGDRPGVV 814

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            L G   + K S ++  T    DR   A  L    A  + GG GGG+P +AQ GG N   
Sbjct: 815 ALFGTDGD-KVSFVVATTAAARDRGLAAGKLIPAFAPAV-GGRGGGKPDLAQGGGQNPAG 872

Query: 885 ADQAIAGVASFL 896
              AIA + S L
Sbjct: 873 VPDAIAALRSAL 884


>gi|168000843|ref|XP_001753125.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695824|gb|EDQ82166.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 927

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 342/916 (37%), Positives = 517/916 (56%), Gaps = 73/916 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  FLEF+   GH++LPSSSL+P +DPT++ T +GM+ FK IF GQ    Y   TT Q
Sbjct: 38  AIRKRFLEFYAARGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGQVPRSYPCATTTQ 96

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           K VR     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+EF L   R+
Sbjct: 97  KVVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKRQAIAWAWELATQEFKLPLERV 152

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           +++V+++D+EAF +W+   G+  ++I R+   DNFWS   TGPCGPCSE++FD      G
Sbjct: 153 WVSVFEDDDEAFAIWRDEVGVPVERIKRMGAEDNFWSSGATGPCGPCSEMYFDF-HPERG 211

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                  +  R+IE +NLVFMQ+ + +  +   L   +IDTG+GLERMA +LQ+  NNY+
Sbjct: 212 TDDADLNDDSRFIEFYNLVFMQYNRTDDGQLEPLKNKNIDTGLGLERMAQILQQVPNNYE 271

Query: 246 IDLFKHLIQASEQVTGMKYEG--NNIVNH-RVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +I  +  +  + Y+   + +  + +VI DH R+  +LI+DG+ P+N GRGY++R
Sbjct: 272 TDLIYPIIARAAALANVDYQSADDRVKTYLKVIGDHTRAVVYLISDGVYPSNIGRGYIVR 331

Query: 303 RIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PELIQAKLLIEETLRSE 354
           R++RR +   RLLG         E   +  +  +   M     P + Q K+ I   L+ E
Sbjct: 332 RLIRRVVRMGRLLGIRGDGQGNQEGAFLPTVAEVAVAMSKDVDPNVEQQKIKIYNELKRE 391

Query: 355 DERFGKTLDRGLVLLDGVLSHL----GKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + RF +TL++G  LL+ +L+      G D   L+G   F+LYDT G P++I +++   RG
Sbjct: 392 ELRFVQTLEKGEKLLEELLAEALEKRGTDTPCLSGKDVFRLYDTFGFPVEITEEVASERG 451

Query: 410 LAGIDIISFNQALEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           +  +D+  F   +E QR +++A      L +G G  +++   + E    T+F+GYD    
Sbjct: 452 VT-VDLAGFESEMEIQRKQSQAAHNVIKLAVG-GAAQEMLAQVPE----TEFLGYD---- 501

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                            DLT+  SS + AI+  GE + EA  G++VE++ D+TPFYAE+G
Sbjct: 502 -----------------DLTS--SSSILAILANGEALGEASEGEEVELLLDRTPFYAESG 542

Query: 526 GQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           GQ+GD G      GD   +       K  G F H  +V+ GI++  + +   +D   R +
Sbjct: 543 GQVGDHGYLRVFGGDSEAVVKVKDVVKEAGRFRHIGVVQDGIVKVGLGVEAEVDPVLRTR 602

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             I+H+ATHLL  AL  +LGS VSQ GS ++ D LRFD    + +T AE+  +E  VN+ 
Sbjct: 603 AQIHHTATHLLQAALKNVLGSDVSQAGSLVSFDRLRFDFNLPRAMTDAEINKVEMLVNEW 662

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I   +PV +  M    A   GA A+ G KY ++VRV+SV     G+ S  LCGGTHV + 
Sbjct: 663 IGMGVPVTSEEMAIAAAKEKGAIAMFGEKYGEQVRVISVP----GI-SMELCGGTHVRNI 717

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI  L I+SE  I +G+RRIEA+ G     ++  +D  +K L++ LKV   ++ GRV  
Sbjct: 718 AEIRGLKIMSEQGIASGVRRIEAVAGNAFIEYINARDAVVKQLSASLKVKADDLAGRVVG 777

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD--VNFMSHIISEVDSKELKSVMDA 815
           + EE R  +   A  +++L V        +   I D     +   + ++D++ LK+  + 
Sbjct: 778 LQEEVRASRNEAAALRVELAVAKAEALLSTATSIGDSSTRVLVASLDKIDAESLKAAAEH 837

Query: 816 LQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           L  K+     ++VG S  + K S++   +  ++ +   A       AK+  GGGGGGRP+
Sbjct: 838 LLAKLGDPAAVVVGSSPGDGKVSLVATFSPSVVKQGIQAGKFVGTIAKIC-GGGGGGRPN 896

Query: 874 MAQSGGPNGNKADQAI 889
            AQ+GG    K D+A+
Sbjct: 897 FAQAGGRQPEKLDEAL 912


>gi|33866890|ref|NP_898449.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|41018174|sp|Q7U3R9|SYA_SYNPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33639491|emb|CAE08875.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 889

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 304/765 (39%), Positives = 445/765 (58%), Gaps = 42/765 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL F+ + GH+ + S+SLIP  DPT++ T +GM+PFK +F GQ++      T+ QK
Sbjct: 20  IREAFLNFYAERGHQRMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSSQK 78

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ + +D R L 
Sbjct: 79  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTQVYGIDPRNLV 134

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + G 
Sbjct: 135 VSVFREDDEAEQIWRDVVGVNTKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-GD 193

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY+ 
Sbjct: 194 DGIDLEDDDRFIEFYNLVFMQYNRDAEGNLTPLANRNIDTGMGLERMAQILQKVPNNYET 253

Query: 247 DLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   LIQA+  +  + Y   +     + +VI DH R+ + LI DG+  +N GRGY+LRR
Sbjct: 254 DLIFPLIQAAADLACVDYAQLDDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYILRR 313

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF +TL+
Sbjct: 314 LLRRVVRHGRLLGIDKPFLVTMGEAAIDLLKGAHPGVIERQEVILAELQREEARFLETLE 373

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG  LL  VL+   +   ++G  AF+LYDT+G PL++ Q+I   + +  +D+  F  A+E
Sbjct: 374 RGEKLLAEVLAS--RPTQISGAQAFELYDTYGFPLELTQEIAEEQRIT-VDLDGFEVAME 430

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RA+A ++ +     + I   +     AT F GYD L                P   
Sbjct: 431 EQRQRAKAAAVSIDLTLQDAIE-QVAGDQPATAFKGYDAL--------------DHP--- 472

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S V+A+V  G     A +G  V+VV D TPFY E GGQ+GD G   G  + + I
Sbjct: 473 ------STVQALVVNGAPASTASAGDVVQVVLDSTPFYGEGGGQVGDRGSLSGVDVIVAI 526

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  ++  
Sbjct: 527 DSVSRSRD-VFVHSGRMERGHLAVGDTVNAQVDRSCRRRAQANHTATHLLQAALKQVVDP 585

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
            + Q GS +  D LRFD      +T+ +L  IE  +N  IA+   +  + M  + A A+G
Sbjct: 586 GIGQAGSLVDFDRLRFDFHCPTAVTAEQLAQIETLINGWIAEAHCLEVQEMAIDQAKAAG 645

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+ES + AGIRRI
Sbjct: 646 AVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVAESGVAAGIRRI 700

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           EA+ G    ++L  +D  +K L    K     +V RV  + EE +
Sbjct: 701 EAVAGPAVLAYLNERDAVVKQLGDRFKAQPAEIVDRVTALQEELK 745


>gi|296126160|ref|YP_003633412.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296017976|gb|ADG71213.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 857

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 316/896 (35%), Positives = 486/896 (54%), Gaps = 81/896 (9%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DPTL+FT +GM+ FK  + G +K  Y  V T+QKC R     +DL+N
Sbjct: 19  HVIEKSSSLIPIDDPTLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74

Query: 80  VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF F G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW  A ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q        L  + IDTGMGLER+  ++Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDTDGNLSPLQNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
             +   +KYE  N     +I DHLR+  F++A+G +P+NEGRGYVLRR++RRA+  +  L
Sbjct: 255 IIKKLNVKYEDKNKTKINLIADHLRALVFVLAEGCVPSNEGRGYVLRRLLRRALKTSSDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  L  A+       Y  L + +  I+  L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGAFLNELTGAVIDVYKDIYDYLPKEEENIKRILKDEENKFLNTISAGMNKLYSVMED 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
               +++ G  AF L+DT+GLP DI ++     G   +D   F +A+EEQ+ R+R     
Sbjct: 375 NKDSKVIKGSDAFMLFDTYGLPFDITEEEANDHGFT-VDRAGFEEAMEEQKKRSR----- 428

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
            G+G  +K  F     +  T+++G DL                    +LTNGV + V ++
Sbjct: 429 -GTGEDKKSKFGYVANFD-TKYVGEDLN-------------------NLTNGVKAKVISV 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIF 554
                +           +V D +PFY E GGQ+GD G     D   +++TD QKK E   
Sbjct: 468 YNDNTV-----------IVTDVSPFYGEMGGQVGDNGYIETSDKQTIKVTDTQKK-ENTI 515

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H         +    + L ++   R  +  NH+ATH+L   L   LG+HV+Q GS +  
Sbjct: 516 IHILENNNHSFKEGEEITLFVNADRRMAIRKNHTATHILQRVLELTLGNHVNQAGSYVCE 575

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D LRFD TH   I+   L +IE+ VN+++ +++P V + M++E+AI+SGA AL G KY D
Sbjct: 576 DYLRFDFTHPDSISEETLLNIENKVNEVVFKSMPAVIKYMSKEEAISSGAKALFGEKYPD 635

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VR++ +    G   S  LCGG+H+++T E+   +IVSE S  +G+RRIEAITG +A + 
Sbjct: 636 TVRILDI----GDGFSVELCGGSHLTNTSEVGYFHIVSEGSAASGVRRIEAITGLKAANE 691

Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRK--------LQLNVED 785
                 K+K+LA  L  S+   +  R E +  E +KLQ    + K           N ED
Sbjct: 692 ATKLFSKVKNLAHILNASKIEEITIRAENLQNEVKKLQKDIKQLKTSGASVTSFMDNYED 751

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           L   +  ++ F   I      KE++   D ++++++  I +++  + +   S+L+ +T  
Sbjct: 752 LGGIRFYNLEFNEDI------KEVRLYADTIKERVKDSIAVMISKT-DSSNSILVQLTG- 803

Query: 846 LLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                +AV   +LSA  +        GG GGG+   AQ    N +KA + I  + S
Sbjct: 804 -----SAVKEKKLSANNIIKDIIKTAGGRGGGKDTFAQGSIENIDKAKEEINKLKS 854


>gi|149178839|ref|ZP_01857419.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842314|gb|EDL56697.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 875

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 323/913 (35%), Positives = 496/913 (54%), Gaps = 70/913 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R ++L FF++ G    PS  L+P +D T++FT +GM  FK+ F G  K  + + TT Q 
Sbjct: 6   LRESYLSFFEEKGCVKRPSDVLVPRDDKTVLFTPAGMNQFKDQFLGVGKLEFPSATTCQM 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+ NVG T  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   LD   
Sbjct: 66  CLRTG----DIQNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEYLTDKKYLGLDPSL 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQ 179
           L +TVY ED+EA+ +W     L A++I R   ++NFW     S    G CGPCSEIF+  
Sbjct: 122 LSVTVYQEDDEAYNIWHDEIKLPANRISRENEHENFWPAGAPSDGPDGVCGPCSEIFYH- 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237
               P G       G+  +EIWNLVF QF +       +  LPK +IDTGMGLER A+VL
Sbjct: 181 ----PNG-------GKDNVEIWNLVFTQFNRVGNPPDNLKPLPKKNIDTGMGLERTASVL 229

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +N++ID  K L  A+  + G  Y+ +       R I DH+R+ +F I +G+ P  +
Sbjct: 230 QGVRSNFEIDTLKQLCLAAGDIVGTGYDFDAPSGRPVRRISDHVRAITFSIHEGVNPGRD 289

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
              YV+R+++RRA+    LLG  EP +  L+PA+   M + YP++ +    ++ T++ E+
Sbjct: 290 KESYVVRQLLRRALLEGYLLGKHEPFLHRLVPAVVEIMKAPYPDIAKTVENVQSTIKEEE 349

Query: 356 ERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F   +++GL   +G L  +      +++G+ AF L+ T G  +++ +  L A+    +
Sbjct: 350 EQFLGVIEKGLSRFEGFLKSAEQAGSSVISGEDAFDLHQTDGFLIELTE-ALAAKNNMSV 408

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +   FN  ++  +  + + +  L S  +E    +L +    T F GY+            
Sbjct: 409 NRTEFNNMMQRHQKDSGSGAF-LDSVMSEGPLTALHKTISETDFKGYE------------ 455

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQTPFYAEAGGQLGD 530
                      T    S V  I+ +  +VE  V       V VV DQTPFYAEAGGQ+GD
Sbjct: 456 -----------TTTTESKVIGIIAEDRLVESMVEKGHAHPVVVVLDQTPFYAEAGGQVGD 504

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    DGI+ ++T+ QK A G+++H   +  G L    +L  T+    R  +   HSAT
Sbjct: 505 TGFLEADGIKFEVTNTQKNA-GLYLHIGHLLTGKLEQGQTLTATVTEPRRSGIQRAHSAT 563

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLHHAL T+LG +  Q GS +  D LRFD +HSK +T  E+  IED +N  +++  PV 
Sbjct: 564 HLLHHALHTVLGENAMQRGSKVEEDTLRFDFSHSKAVTPEEISRIEDIINQRVSEGAPVT 623

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  + A   GA AL G KY D VRVV +     G  S+ LCGGTH+S+TG++ L  I
Sbjct: 624 TELMKLQKARELGAMALFGEKYPDYVRVVQM-----GDFSTELCGGTHLSNTGQVGLCKI 678

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYR- 768
           ++E  +  G+RRI A+TG +A       ++ L  +A+ +KV + + +  R++ + +E R 
Sbjct: 679 INEELVAKGVRRIYALTGPKALEKTRDTEKLLLEIAAQMKVPRPDDLPVRIQHLQDELRE 738

Query: 769 -KLQLIH-AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            K QL   + + L    +DL      + DV  +++   +    +L+ + D L+KK +  +
Sbjct: 739 TKKQLTKFSSKSLAGTADDLLEEAPVVNDVKIVAYHAKDASRDQLRELADHLRKKGKQ-V 797

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +++G   + K +++  V  DL+ +         +A  + GGGGGGRP MA++GG + +K
Sbjct: 798 ALILGTVLDGKVALMAAVNSDLVKQGLKAGDCVKAAAKVVGGGGGGRPDMAEAGGKDPDK 857

Query: 885 ADQAIAGVASFLK 897
            D+A+   A + +
Sbjct: 858 LDEALTTGADYYR 870


>gi|163786078|ref|ZP_02180526.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877938|gb|EDP71994.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 870

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 335/924 (36%), Positives = 485/924 (52%), Gaps = 93/924 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+ FL FF+   H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    +   QK
Sbjct: 6   IRSKFLNFFEGKQHLIVPSAPMVLKDDPTLMFVNSGMAPFKEYFLGNADPKKNRIADSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+  LY
Sbjct: 66  CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYGIDKDMLY 125

Query: 127 ITVYD---------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           +TV++          D+EA+ LWK+   +  D+I+     DNFW M + GPCGPCSEI  
Sbjct: 126 VTVFEGSNDADNLKMDQEAYDLWKEF--IPEDRILMGNKKDNFWEMGDQGPCGPCSEIHV 183

Query: 178 D-QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D + E     + G S    +  + +EIWNLVFMQ+ ++  +    LP   IDTGMG ER+
Sbjct: 184 DIRSEEEKSKVDGKSLVNMDHPQVVEIWNLVFMQYNRKANKSLETLPNKHIDTGMGFERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGIL 291
             VLQ   +NYD D+F  +I+  E +T   Y  +  V+   RVI DH+R+ +F IADG L
Sbjct: 244 CMVLQGVQSNYDTDVFTPIIREIEAITHKDYGKDEKVDVAIRVISDHVRAVAFSIADGQL 303

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K LIE  
Sbjct: 304 PSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVNILSKKMGKAFPELKAQKQLIENV 363

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F +TL++GLVLLDG++      EI +G   F+L DT+G P D+   IL  +G 
Sbjct: 364 IKEEESSFLRTLEQGLVLLDGIVKTSKTKEI-SGSKVFELKDTYGFPEDLTDLILREKGY 422

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              +   F  +L+ Q+ R R       S      W  L       +FIGYD L     + 
Sbjct: 423 T-YNAEEFKTSLKAQQDRGRE-----ASELKSDDWTILHHD-EVEEFIGYDTLEAHVKIT 475

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
             RKV  +K                            G+  ++VF+ TPFY E GGQ+GD
Sbjct: 476 RYRKVTSKK---------------------------DGEMYQLVFNITPFYPEGGGQVGD 508

Query: 531 TGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G    + G  + I D  KK   + +H    +     ++  L   +D + R +   NH+A
Sbjct: 509 KGYLEDEHGDVVYILDT-KKENNLIIH--FTKNLPKHSDEVLKAVVDIKQRYRTECNHTA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I   LP+
Sbjct: 566 THLLHQALREVLGDHVEQKGSAVHSKHLRFDFSHFSKLTLEELRDVENFVNSRIEGKLPL 625

Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              R + +E AIA GA +L G KY D VR +          S  LCGGTHV++T +I   
Sbjct: 626 EENRSVPKEQAIADGAMSLFGEKYGDNVRTIRFG------QSIELCGGTHVNNTADIWHF 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSH--------------LMGQDEKLKSLASFLKVSQG 754
            I SES++ +GIRRIEAIT    +                L    E LK+L + L+    
Sbjct: 680 KITSESAVASGIRRIEAITNDAVKDFYFENNRVYFEMKDLLNNAKEPLKALQN-LQDENT 738

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           ++  ++E + ++  K + I  + K +L        +I  V F++  + ++D+  +K V  
Sbjct: 739 DLKKQIENLLKD--KAKNIKGELKNELT-------EINGVQFLAKKL-DLDAGGIKDVSF 788

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRP 872
            L  + ++ + +L G     KA +   ++++L+     NA  + R   K +  GGGGG+P
Sbjct: 789 ELGSQFKN-LFLLFGSENNGKAILSCYISKELVASKDLNAGTIVRELGKHI-QGGGGGQP 846

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
             A +GG N    D A+    ++L
Sbjct: 847 FFATAGGKNPAGIDAALKAAKNYL 870


>gi|310287353|ref|YP_003938611.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251289|gb|ADO53037.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 892

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 342/920 (37%), Positives = 508/920 (55%), Gaps = 74/920 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ + +
Sbjct: 3   TSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT       +
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231
           +G E    G P + E   R+IEIW+LVF  +E  N + +  L       + +IDTG GLE
Sbjct: 177 RGPEYGKDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++DG
Sbjct: 235 RLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + E
Sbjct: 295 VRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVSE 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +   E++ F +TLD G+ +LD  ++   K  D +++GD AF L+DT+G P+++  ++   
Sbjct: 355 SAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAAD 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G+  +D   F + + EQ+SRARA +L              K+++     +  D      
Sbjct: 415 QGVK-VDEAKFRELMSEQKSRARADAL--------------KKRHNVDLSVYDDF----- 454

Query: 468 FMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYA 522
                +K L Q  PID            V  I+Q+G+    AVS    VEV+ D+TPFYA
Sbjct: 455 -----KKTLVQ--PIDFLGYTDMSARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYA 507

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +  +ID   R 
Sbjct: 508 EAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTEVSASIDLARRG 567

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND
Sbjct: 568 AIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVND 627

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V T  M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV  
Sbjct: 628 RLRDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDH 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV 
Sbjct: 685 VGKIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVN 744

Query: 762 ----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL--KSV 812
               ++ E  R+L  ++ + +L  +V  L   +    A V   +  +    S +   K+V
Sbjct: 745 TLLAKLKESDRRLAAMY-EGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTV 803

Query: 813 MDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           MD   +  +  S ++ L G+S++ K  V +   E        A DL R ++K+L GGGGG
Sbjct: 804 MDVRAQLGEDASVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKML-GGGGG 862

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           G+P  AQ GG + +  D+A+
Sbjct: 863 GKPDFAQGGGSDASCIDEAL 882


>gi|227432461|ref|ZP_03914448.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351782|gb|EEJ42021.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 893

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 347/930 (37%), Positives = 510/930 (54%), Gaps = 74/930 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++SS  IR  FL+FF   GHE +PS +LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKDLSSAEIRQMFLDFFASKGHEAVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE+AI  AW+LLT   
Sbjct: 61  PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +LY+TVY +D+EA K+W++ + L    I  +   DNFW + E GP GP SEIF
Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225
           FD+G          P   PG   E ERY+EIWNLVF QF       +  +   LP  +ID
Sbjct: 174 FDRGSSFQDLPDDDPEMYPGG--ENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNID 231

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEG--NNIVN--HRVIVDHLR 280
           TGMGLER+ +V Q    N+D DLF  +IQ +E+++    Y+   ++ VN   +VI DH+R
Sbjct: 232 TGMGLERVVSVFQNGRTNFDTDLFLPIIQDTERLSNQFTYDDSQDSEVNTSFKVIADHIR 291

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           + +F I DG LP+NEGRGYV+RR++RRA+ + + LG     + +L+P +   M S YPE+
Sbjct: 292 AITFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEV 351

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLP 397
                 I++T+ +E++RF  TL  GL LL+ V+      G+ +I   D AFKL DT+G P
Sbjct: 352 KANTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGAD-AFKLSDTYGFP 410

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           L++ Q+     GL  +D+  +N  L+ QR RARA               S  +  G    
Sbjct: 411 LELTQEQAEDAGLI-VDVDGYNDELQAQRVRARAAR-------------SNTKSMGVQNA 456

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +  DL   SK++   +  +     + +       V A++   ++         V+V FD 
Sbjct: 457 VLTDLRVDSKYVGWSQTEVNHAEIVAIIGEDEQGVDALLDNADV------DATVQVAFDV 510

Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           TPFY+E GGQ+ D G  +   GD I   +TDVQ    G  +H   V       +  + L 
Sbjct: 511 TPFYSEMGGQVPDFGDVLNTNGDVIA-HVTDVQTAPNGQHIHTVDVISSFTLGD-KVDLK 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D      +S NH+ATH+L  +L  +LG  V Q GS + P+ LRFD  +  P++S +L  
Sbjct: 569 VDMVRHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  +N  IA+NL V     + E A   GA A+ G KY D+VRVVS+     G  +    
Sbjct: 629 IESMMNQEIAKNLSVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753
           GGTH +ST E+ L  IVSES I AG+RRIEA+TG +A S    Q++ LK +A+ LK  + 
Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK-- 807
            +   +V ++  + R +Q  HA+  L+  + + +  +I +    VN  ++I +++     
Sbjct: 744 TDAPEKVYDLQADLRTVQR-HAE-SLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGM 801

Query: 808 -ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             L+ V D  ++   S +++L  ++ EK + ++    +       A +L +  A  + GG
Sbjct: 802 DGLRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHI-GG 860

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGGRP MAQ+GG        A A V++FL
Sbjct: 861 GGGGRPDMAQAGGKKPAGIPDAFAAVSAFL 890


>gi|315655398|ref|ZP_07908298.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490338|gb|EFU79963.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 895

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/866 (34%), Positives = 460/866 (53%), Gaps = 61/866 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   T+
Sbjct: 3   TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT       +
Sbjct: 62  VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI  D
Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPAHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G E  P G P    +G+RY+E+WNLVF +F   E   K    +  L + +IDTG+GLER
Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289
           +A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI DG
Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I E
Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I    
Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464
           G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY    
Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+Q G+ V  A +   +EV+ D+TPFYAEA
Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R  +
Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+ +
Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  TG
Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+  +
Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERITSL 749

Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  +  +    K +L     N++D   S   +  V  +  +       +L+     L+ 
Sbjct: 750 MDRLKVAEKELEKTRLAALLSNLDDYAKSAETLCGVQIIHQVAPAGSVDDLRQAATTLRA 809

Query: 819 KIQS---GIIMLVGISKEKKASVLIV 841
           +  +    ++ L  +  EK   V+ V
Sbjct: 810 RFSNANPAVVALAAVIGEKPMLVVAV 835


>gi|298346853|ref|YP_003719540.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|298236914|gb|ADI68046.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
          Length = 895

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/864 (34%), Positives = 459/864 (53%), Gaps = 58/864 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   T+
Sbjct: 3   TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT       +
Sbjct: 62  VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI  D
Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G E  P G P    +G+RY+E+WNLVF +F   E   K    +  L + +IDTG+GLER
Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289
           +A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI DG
Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I E
Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I    
Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464
           G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY    
Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+Q G+ V  A +   +EV+ D+TPFYAEA
Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R  +
Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+ +
Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  TG
Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+  +
Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERITSL 749

Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  +  +    K +L     N++D   S   +  V  +  +       +L+     L+ 
Sbjct: 750 MDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATTLRA 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVV 842
           +  +    +V ++       ++VV
Sbjct: 810 RFSNANPAVVALAAVIGGKPMLVV 833


>gi|315656689|ref|ZP_07909576.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492644|gb|EFU82248.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 895

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/864 (34%), Positives = 459/864 (53%), Gaps = 58/864 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   T+
Sbjct: 3   TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT       +
Sbjct: 62  VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI  D
Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G E  P G P    +G+RY+E+WNLVF +F   E   K    +  L + +IDTG+GLER
Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289
           +A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI DG
Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I E
Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I    
Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464
           G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY    
Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+Q G+ V  A +   +EV+ D+TPFYAEA
Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R  +
Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+ +
Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  TG
Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+  +
Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERITSL 749

Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +  +  +    K +L     N++D   S   +  V  +  +       +L+     L+ 
Sbjct: 750 MDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATTLRA 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVV 842
           +  +    +V ++       ++VV
Sbjct: 810 RFSNANPAVVALAAVIGGKPMLVV 833


>gi|308276522|gb|ADO26421.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 905

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 329/918 (35%), Positives = 494/918 (53%), Gaps = 71/918 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F K GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 21  IRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTATSI 79

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       F 
Sbjct: 80  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVAEGGFG 135

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA  +W K  G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 136 LDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFMQ E      + N +    LPK +IDTG+G+ER+
Sbjct: 196 GAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGLGVERV 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EG---NNIVNHRVIVDHLRSSSFLIADG 289
           A +LQ   N Y+ DL + +I  +E++TG  Y EG    +++  RVI DH R+   LI DG
Sbjct: 255 ACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMMLILDG 314

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+ + +  I +
Sbjct: 315 VTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENRERILK 374

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +E++ F KTL  G  L +     +  +  ++L+G  AFKL+DT+G P+D+  ++   
Sbjct: 375 VALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTLEMAAE 434

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D   F+  + EQR+RA+A +     G  +   +        T+F GY  L    
Sbjct: 435 AGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSELS--- 490

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V  ++  G  V E  +G +VE++ + +P YAEAGGQ
Sbjct: 491 --------------------TESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYAEAGGQ 530

Query: 528 LGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            GD G  I GD I + + DVQK  + ++VH A V +G L    ++   +D Q R      
Sbjct: 531 TGDRGTIIMGDTI-VNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHSARQA 589

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T+ +L  I+   N  +  +
Sbjct: 590 HSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQAVDVD 649

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + ++A A GA AL G  Y   VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 650 WTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHSSQIG 705

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + I+ ESS+ +G+RRIEA +G  +  +L  +   ++ +A+ +K    ++  R+  + ++
Sbjct: 706 PVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIASLTQK 765

Query: 767 YRKLQLIHAK-RKLQLNVEDLSCHKIAD----VNFMSHIISE-VDSKELKSVMDALQKKI 820
            ++ +   A  R  QL  +       AD    V+ ++H ++E V S +++++   L+ ++
Sbjct: 766 LKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDLKSRL 825

Query: 821 --QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGG---GGGGGRPHM 874
             +  +I L+      K   ++  T+  +     A DL    AKVLG    G GGG+P M
Sbjct: 826 GDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDL----AKVLGSYIQGNGGGKPDM 881

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ    +    D  +A +
Sbjct: 882 AQGSARDIAGFDSGVAAI 899


>gi|304389442|ref|ZP_07371405.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327252|gb|EFL94487.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 895

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/748 (38%), Positives = 419/748 (56%), Gaps = 53/748 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   T+
Sbjct: 3   TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT       +
Sbjct: 62  VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI  D
Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G E  P G P    +G+RY+E+WNLVF +F   E   K    +  L + +IDTG+GLER
Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289
           +A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI DG
Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I E
Sbjct: 298 VRPGNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I    
Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464
           G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY    
Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I+Q G+ V  A +   +EV+ D+TPFYAEA
Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513

Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R  +
Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+ +
Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  TG
Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRA 731
            I  + ++ ESSI +G+RRIEA+ G  A
Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGA 717


>gi|300858567|ref|YP_003783550.1| alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686021|gb|ADK28943.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206280|gb|ADL10622.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330837|gb|ADL21031.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
          Length = 890

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 329/918 (35%), Positives = 494/918 (53%), Gaps = 71/918 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F   F K GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     T++
Sbjct: 6   IRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       F 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVAEGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY +D+EA  +W K  G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFMQ E      + N +    LPK +IDTG+G+ER+
Sbjct: 181 GAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGLGVERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EG---NNIVNHRVIVDHLRSSSFLIADG 289
           A +LQ   N Y+ DL + +I  +E++TG  Y EG    +++  RVI DH R+   LI DG
Sbjct: 240 ACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMMLILDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+ + +  I +
Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENRERILK 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +E++ F KTL  G  L +     +  +  ++L+G  AFKL+DT+G P+D+  ++   
Sbjct: 360 VALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTLEMAAE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D   F+  + EQR+RA+A +     G  +   +        T+F GY  L    
Sbjct: 420 AGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSELS--- 475

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V  ++  G  V E  +G +VE++ + +P YAEAGGQ
Sbjct: 476 --------------------TESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYAEAGGQ 515

Query: 528 LGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            GD G  I GD I + + DVQK  + ++VH A V +G L    ++   +D Q R      
Sbjct: 516 TGDRGTIIMGDTI-VNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHSARQA 574

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T+ +L  I+   N  +  +
Sbjct: 575 HSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQAVDVD 634

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + ++A A GA AL G  Y   VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 635 WTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHSSQIG 690

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + I+ ESS+ +G+RRIEA +G  +  +L  +   ++ +A+ +K    ++  R+  + ++
Sbjct: 691 PVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIASLTQK 750

Query: 767 YRKLQLIHAK-RKLQLNVEDLSCHKIAD----VNFMSHIISE-VDSKELKSVMDALQKKI 820
            ++ +   A  R  QL  +       AD    V+ ++H ++E V S +++++   L+ ++
Sbjct: 751 LKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDLKSRL 810

Query: 821 --QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGG---GGGGGRPHM 874
             +  +I L+      K   ++  T+  +     A DL    AKVLG    G GGG+P M
Sbjct: 811 GDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDL----AKVLGSYIQGNGGGKPDM 866

Query: 875 AQSGGPNGNKADQAIAGV 892
           AQ    +    D  +A +
Sbjct: 867 AQGSARDIAGFDSGVAAI 884


>gi|217967411|ref|YP_002352917.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336510|gb|ACK42303.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 865

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 318/912 (34%), Positives = 494/912 (54%), Gaps = 69/912 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  F+++F    H  LPS+SL+P +DPTL+FT +GMVPFK  F GQ  P  + +TTV
Sbjct: 4   SDIRKKFIDYFVSKDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGIPPKRRITTV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC R      D++ VG T RH TF EMLGNFSFG YFK  AI  A++ LTKE  +   +
Sbjct: 64  QKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGIPISK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC-SEIFFDQG--- 180
           L+I+VY+ED+EA+ +W K  G+  ++I+R+   DNFW            SEI++D G   
Sbjct: 120 LWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDFGPKS 179

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
               +C PG      +  +R++EIWNLVFM +    + +   LP+ +IDTGMGLER+ TV
Sbjct: 180 KDEEDCKPG------DPCDRFMEIWNLVFMAYYMDEEGKLSPLPQKNIDTGMGLERITTV 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           ++  +N ++ DLF  +I+   ++     + ++ V  R+I DH+R  +FL+ DG++P NEG
Sbjct: 234 VEGVSNVFETDLFVPIIEEIRKIV----KDSDSVTERLISDHIRGITFLMGDGVVPTNEG 289

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RR++  A   G  +P +  L+P +   M  AYP+LI+ K  I++ L  E++
Sbjct: 290 RGYVLRRLIRRSLRRAYKHGIVKPFLYKLVPIVVDIMKDAYPDLIEKKDYIQKVLIKEED 349

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +TL++GL LL+         + + G+ AFKLYDT+G P+++ ++I    G   +D+ 
Sbjct: 350 QFLRTLEQGLSLLEDYFRK-APSKTVGGEFAFKLYDTYGFPIELTKEIAEEEGFV-VDVD 407

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-------KYGATQFIGYDLLRGSKFM 469
            FN+ +EEQR +ARA          E+ + SL +           ++F+GY++L      
Sbjct: 408 GFNKYMEEQREKARASM----EAKLEESFISLSDDEVYLMKSLPKSEFVGYEVLES---- 459

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + KVL                      G+  ++  +G++V  + D+TPFY E GGQ+ 
Sbjct: 460 --ESKVL------------------FFIGGKHGKKISNGEEVYFLMDKTPFYPEGGGQVS 499

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG      + + + +V++  E   +H   V +G       +   +D + R     +H+A
Sbjct: 500 DTGKVYNSEVEVMVLEVKRLGEDFIIHRGKVLKGEFEEGQIVRAEVDKEKRYHTMRHHTA 559

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL   LG+HV Q+GS ++P+ LRFD TH  P+T  +LK IE  VN+ I  N  V
Sbjct: 560 THLLHAALREYLGTHVMQSGSLVSPEFLRFDFTHHSPLTYEDLKIIERKVNENILANHKV 619

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
                N E+A   GA AL   KY   VR++ +        S  LCGGTHV  TGEI   Y
Sbjct: 620 EKFWTNLEEAKRMGAIALFTEKYQKNVRIIKI-----NNVSMELCGGTHVDCTGEIGSFY 674

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV E  I +GIRRI A+ G +A      ++E L  ++  LK S   +  ++E++ +E ++
Sbjct: 675 IVKEEGIGSGIRRIFAVCGLKAWEFQKRREEILNKISFVLKSSPDEIYVKLEKLIDEMKE 734

Query: 770 LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGII 825
            +      + ++  ++L    +KI +    S I + VD  ++ +K + D L+ K  + I+
Sbjct: 735 KEKKIKDLEERIIEKELEVLANKIENWGEFSFICTYVDMENEAIKKLGDHLKSKNDNLIM 794

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    S  K    ++V  +  L    A  +  +  +    G GGG+  +AQ   P  +  
Sbjct: 795 VFFKPSDNKLLGTIMVSKKVNLKGITAKKIVEIIGERF-NGKGGGKDTLAQISLPKTDIE 853

Query: 886 DQAIAGVASFLK 897
           D   A   + LK
Sbjct: 854 DIKRALKETLLK 865


>gi|148272984|ref|YP_001222545.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|205830025|sp|A5CRZ5|SYA_CLAM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147830914|emb|CAN01858.1| alaS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 885

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/786 (37%), Positives = 431/786 (54%), Gaps = 53/786 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L +F   GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   T
Sbjct: 2   QTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFPRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D++ VGRT RH TFF+M GNFSFG YFKE+AI  AW+LLT       
Sbjct: 61  SVQKCIRT----LDIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADGG 116

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             F  D   L++TVY ED+EA + WK+I+GL  ++I  +  + N+W   + GP GPCSEI
Sbjct: 117 LGFSPDD--LWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229
           FFD+G    G   G + + +RY+EIWNLVFMQ+ +     K +  IL   PK +IDTGMG
Sbjct: 175 FFDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPKKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287
           LER+A + Q   N Y+ID  + ++  + +++G +Y  +  + V  R++ DH+RSS  L++
Sbjct: 234 LERVAFLKQGVENMYEIDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSLMLMS 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGY+LRR+MRR +   RL+G        L PA    M +AYPE+      I
Sbjct: 294 DGVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+E F +TL  G  +LD  +        E + GD AF L+DT G P+D+  ++ 
Sbjct: 354 SRLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D  +F++ + EQR+RA+A +    +   +   +S     G T+F GYD L  
Sbjct: 414 EENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELE- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G  V+ AV+G   EV+  +T  YAE+G
Sbjct: 472 ----------------------TGTTILGLIVGGRSVDHAVAGDIAEVILPETSLYAESG 509

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G  +G G  L++ DVQK  +G+  H   V  G +    +    +D   RR  + 
Sbjct: 510 GQEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTVVDADWRRGATQ 569

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  +LG    Q+GS      +R D   ++ ++S     IED  N  +  
Sbjct: 570 AHSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSSETRSEIEDIANGAVRD 629

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L VVTR+M  ++A   GA AL G KY D VRVV +    GG  S  LC GTHVSS+ +I
Sbjct: 630 DLRVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +V ESS+ +  RRIE++ G+ A   L  +   +  L S LK  +  +  R+ ++ +
Sbjct: 686 GLINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSTLKTPREQLPDRIADLMQ 745

Query: 766 EYRKLQ 771
             +  +
Sbjct: 746 NLKTAE 751


>gi|225620397|ref|YP_002721654.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225215216|gb|ACN83950.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 867

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 303/856 (35%), Positives = 479/856 (55%), Gaps = 66/856 (7%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DP+L+FT +GM+ FK  + G +K  Y  V T+QKC R     +DL+N
Sbjct: 19  HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74

Query: 80  VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF F G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW  A ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGVPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q  +     LP + IDTGMGLER+  + Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDTEGNLSPLPNVGIDTGMGLERLCYITQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
             +   +KY+  N     +I DHLR+  F+I++G  P+NEGRGYVLRR++RRA+  A  L
Sbjct: 255 IAKKLNVKYDDKNKTKINLIADHLRALVFVISEGCTPSNEGRGYVLRRLLRRALKTASDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  +  ++       Y  L + +  ++  L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGSFLNEITSSVVNVYKEIYDYLPKEEENVKRILKDEENKFINTISAGMNKLYAVMEE 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
               ++++G  AF L+DT+GLP+DI ++     G   +D   F +A+EEQ+ R+R     
Sbjct: 375 NKDSKVISGKDAFMLFDTYGLPIDITEEEASDHGFT-VDKAGFEEAMEEQKKRSR----- 428

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
            G+G  ++  F   E Y  T+++G                   +   +L NGV++ + A+
Sbjct: 429 -GAGEDKRSKFGYVENY-ETKYVG-------------------EETDNLINGVNAKIIAV 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGI 553
            +     ++  S   V ++ D +PFY E GGQ+GD G  I +  +  ++I D QKK E  
Sbjct: 468 YEDNAKKDKTSSSNAV-IITDVSPFYGEMGGQIGDNG-YIENSKKEIIKIIDTQKK-ENT 524

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +H A      L     + L +++  R  +  NH+ATH+L   L   LG+HV+Q GS ++
Sbjct: 525 IIHIADCSSHSLSVGEEIKLFVNFDRRSAIRKNHTATHILQKVLELTLGNHVNQAGSFVS 584

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            + LRFD TH   I+   L SIE+ VN+++ +++P V + M +E+AIA GA AL G KY 
Sbjct: 585 DEYLRFDFTHPDSISEDTLISIENQVNEVVFKSMPAVIKYMPKEEAIACGAKALFGEKYP 644

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           D VR++ +    G   S  LCGG+H+++T E+   +IVSE S+ +G+RRIEAITG +A +
Sbjct: 645 DTVRILDI----GNGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLKAAN 700

Query: 734 HLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRK--------LQLNVE 784
                  K+K+LA  L  S+ + +  R E +  E +KLQ    + K           N E
Sbjct: 701 EASKLFSKVKNLAHILNASKTDELTVRAESLQNEVKKLQKEIKQLKTSGASAVSFMDNFE 760

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           DL   K  ++ F   I      KE++   D ++++++  I +++  + +   S+L+ +T 
Sbjct: 761 DLKGIKFYNLEFNDDI------KEVRLYADTIKERVKDSIAVMISKT-DSSNSILVQITG 813

Query: 845 DLLDRFNAVDLARLSA 860
                 NA+   +LSA
Sbjct: 814 ------NALKEKKLSA 823


>gi|291301348|ref|YP_003512626.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290570568|gb|ADD43533.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 885

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 324/917 (35%), Positives = 486/917 (52%), Gaps = 65/917 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I+  FL  F+ NGH ++PS+ L    DP L+F N+GMV F   FTGQ+ P +   T+
Sbjct: 3   TAEIKRRFLAHFEANGHTVVPSAPLPAIEDPNLLFINAGMVQFVPYFTGQQTPPWTRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R      D++ VG T RH TFF+M GNFSFG YFKE+AI+LAWDL+T+       
Sbjct: 63  VQKCIRT----PDIEEVGITTRHGTFFQMNGNFSFGDYFKEKAIELAWDLMTRPQSQGGL 118

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D+ +LY +VY +D+EA  LWK+I+GL  ++I R+  ++NFWSM   GPCGPCSEI  D
Sbjct: 119 GFDESKLYPSVYVDDDEAIGLWKRIAGLPDERIPRLGKSENFWSMGIPGPCGPCSEILLD 178

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLER 232
            G     G  G    G+RY+E+WNLVFMQ    E  NK++  IL   P  +IDTGMGLER
Sbjct: 179 LGPEF--GEEGDFLNGDRYMELWNLVFMQNLRGEGTNKEDFEILGDLPAKNIDTGMGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           +A +LQ   N ++ID  + LI  + ++TG +Y  +  + V  RVI DH+R+   LI DG+
Sbjct: 237 VAYMLQGVNNMFEIDEVRPLIDRASELTGKRYGASRPDDVRFRVIADHVRTGLMLIGDGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+   RLLG+ +  +  LLP     M  +YPEL +    I   
Sbjct: 297 TPSNEGRGYVLRRILRRAIRAIRLLGFEDKALPELLPVARDCMSPSYPELSEDFERISSY 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              E+E F  TL +G  +LD  +  +      +L G  AF+L+DT+G P+D+  ++   +
Sbjct: 357 AYGEEEAFRSTLRQGTTILDTAVKDTKASGGTLLPGAKAFELHDTYGFPIDLTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F Q + EQR RA+A +    +   +   +  L    G T +  Y+ L    
Sbjct: 417 GLK-VDEEGFRQLMAEQRRRAKADAQSRKTAHADMSAYRELLTAGGPTDWKAYETLN--- 472

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V  ++ +G  ++ A  GQ VEVV D+TPFYAE+GGQ
Sbjct: 473 --------------------TESTVLGMLAEGSPIQVAKEGQLVEVVLDKTPFYAESGGQ 512

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G   G  +  ++ DVQ+  +G+ VH   V +G L    ++   +D + R      H
Sbjct: 513 HADAGTITGASVSAEVVDVQRPIKGLVVHQVRVLKGELAVGTAVKADVDPEWRLGARQAH 572

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S TH++H AL  +LG    Q+GS   P  LR D +    ++      +E+  N  + ++L
Sbjct: 573 SGTHVVHAALREVLGPAALQSGSFNRPGYLRLDFSWRSKLSDESRSEVEEAANRAVRKDL 632

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV  + M   +A   GA AL G  Y++ VRVV +    GG  S  LCGGTHV    +I  
Sbjct: 633 PVAVKYMTLPEAREFGALALFGETYDETVRVVEI----GGEWSRELCGGTHVQHAAQIGP 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + I SE+S+ +G RR+EA+TG  A  +L  + + +  +A  L   +  +  R+  + +  
Sbjct: 689 VVITSEASVGSGQRRVEAVTGLEAFHYLARERDLVSQIADELGAPRAELPERISALMQRA 748

Query: 768 ----RKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISE----VDSKELKSVMDALQ 817
               ++L  + AK +L+ +    +    KI DV   +    +     D+++L + +    
Sbjct: 749 KDAEKELANLRAK-ELRDSAATFAAQAKKIGDVAVAAVQAPDGTGGGDARKLATEIRGHL 807

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
              + GI  +   +  K + V+IV         +A  L + +      G GGG   +AQ 
Sbjct: 808 DPNKPGIAAVAATAGGKASLVVIVNKTGTAQGLSAQALVKGALS----GRGGGNDEVAQG 863

Query: 878 GGPNGNKADQAIAGVAS 894
           GG   ++A   +  V++
Sbjct: 864 GGVPADQASALLQAVSA 880


>gi|319442138|ref|ZP_07991294.1| alanyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 911

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 331/935 (35%), Positives = 485/935 (51%), Gaps = 89/935 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64
           IR  F+  + K GH  +PS+SLI  +DP L+F N+GMVPFK  F G++ P +     T++
Sbjct: 6   IRERFINHYVKAGHAEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGEQNPPFPNGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT   D     
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISHAWSLLTDPVDEGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD+ RL++TVY +D+EA ++W +  G+  ++I R+   DN+WSM   GPCGPCSEI++D+
Sbjct: 121 LDKDRLWVTVYLDDDEAAQIWHEKIGIPEERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERF----ILPKMSIDTGMGLERM 233
           GE   G   G   +  RYIE+WNLVFMQ E+     ++ F     LPK +IDTGMG+ER+
Sbjct: 181 GEEY-GEYGGPVVDDTRYIELWNLVFMQNERGKGIGKDDFEIVGPLPKKNIDTGMGVERV 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRV 274
           A +LQ   N Y+ DL   +I+ +E +TG  Y                      + +  RV
Sbjct: 240 ACILQGVENVYETDLLAPVIKVAEDLTGATYGRSEQLIKAGDTESADYHAAHTDDIRFRV 299

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           I DH R+   LI DG+ P NEGRGY+LRR++RR +  ARLLG T   M  L+  + + M 
Sbjct: 300 IADHCRTGLMLILDGVTPGNEGRGYILRRLLRRIIRSARLLGATGVTMEKLMDTVRSTMT 359

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYD 392
            +YPE+      I      E+  F KTL+ G  L + V + +    +  L+GD AF L+D
Sbjct: 360 PSYPEIADNWERIRAVAVGEETAFLKTLESGTRLFETVAAQVKGSGLTELSGDAAFSLHD 419

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           THG P+D+  ++    GL  +D   F+  + EQ++RA+A +        +   +      
Sbjct: 420 THGFPIDLTVEMAAESGLT-VDKEGFDARMAEQKARAKADNRAKKHDHADVAVYRPFVDN 478

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
             T F+GYD                       T    SI+  IV  G +VE A  GQKV+
Sbjct: 479 HPTVFLGYDS----------------------TEAEGSIL-GIVAGGALVERAGEGQKVQ 515

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQTPFYAEAGGQL D G   G G    + DVQK  + +++H+  V  G       + 
Sbjct: 516 LILDQTPFYAEAGGQLADRGQITGTGGAATVDDVQKTGKKVWLHNVTVTGGEFAVGQRVT 575

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            T+D+  R +    HS TH++H AL  +LG    Q GS   P  LRFD  + + +T+ +L
Sbjct: 576 ATVDHTWRHKARQAHSGTHMIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYGEQLTADQL 635

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + IE   N+ +  +  V T   + ++A A GA AL G  Y   VRVV +    GG  S  
Sbjct: 636 RRIELIANEAVDADYQVNTIETSLDEAKAMGAMALFGENYGAEVRVVEI----GGPFSME 691

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGG HV  + +I  + ++ ESS+ +G+RRIEA +G  +   L  Q +   +LAS L++ 
Sbjct: 692 LCGGIHVEHSSQIGPVAVLGESSVGSGVRRIEAYSGVDSFRFLSDQHKLSGALASQLRIP 751

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD------- 805
              +  RVE +     + +    KR  Q    +LS  K+ D    + ++ ++        
Sbjct: 752 SEELPDRVEALTTRLNEAE----KRIAQFRTAELSA-KVGDYLLQATMVGDIRVVAARVP 806

Query: 806 ----SKELKSVMDALQKKIQS--GIIMLVGISKE--KKASVLIVVTEDLLDRFNAVDLAR 857
               + +L+++    + +  S  G+I  +    E  K   +       +     A D+ +
Sbjct: 807 DGIVAGDLRTLATEAKSRAGSDAGVIFFISSDPESGKVPFIAAATDAAVAAGVKAGDIIK 866

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             A  + GG GGG+P MAQ  G +    D A+  V
Sbjct: 867 TVAPYV-GGRGGGKPAMAQGSGSDAAGIDAAVKAV 900


>gi|284991581|ref|YP_003410135.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064826|gb|ADB75764.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 897

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 329/923 (35%), Positives = 492/923 (53%), Gaps = 61/923 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FLE F   GH ++PS+SL+   DP+L+FT +GMVPF    TG+E   Y   T
Sbjct: 2   QTAEIRRRFLEHFASRGHTVVPSASLV-SPDPSLLFTVAGMVPFIPYLTGREPAPYPRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119
           +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+L+T   D   
Sbjct: 61  SVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAIQHAWELVTGSVDDGG 116

Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
              D  R+++TVY +D+EA + W +I+GL  ++I R+   DN+W   + GP GPCSEI++
Sbjct: 117 LGFDPERIWVTVYLDDDEAAEAWHRIAGLPVERIQRLGKKDNYWHTGQPGPGGPCSEIYY 176

Query: 178 DQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFI----LPKMSIDTGMGL 230
           D+G    P G P     G+R++EIWNLVFMQ+E  +   +E F     LPK +IDTGMGL
Sbjct: 177 DRGPQFGPDGGPLVDTAGDRFLEIWNLVFMQYELTDVRSKEDFRIVGELPKKNIDTGMGL 236

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    ++  + ++ G+ Y  + ++ V  RV+ DH+RS   LI D
Sbjct: 237 ERVAYLLQGVDNLYEIDEVAPVLHRAAEIAGVTYGAKHDDDVRLRVVADHVRSGLMLIGD 296

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RRA+   +LLG  E  +  LLP     M ++YPEL      I 
Sbjct: 297 GVTPGNEGRGYILRRLLRRAVRSMKLLGVDEATLPALLPVSRDAMKASYPELETDFARIS 356

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+E F +TL  G  L D  +  +       L+GD AF L+DT+G P+D+  ++  
Sbjct: 357 SVAYAEEEAFRRTLSSGTALFDTAVREARAAGTASLSGDQAFSLHDTYGFPIDVTLEMAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRG 465
            +G+  +D   F   +++QR RARA +    +G+ + + +  L   +G T +  YD LR 
Sbjct: 417 EQGVT-VDEEGFRALMQQQRDRARADARAKRTGSVDVLAYRRLLADHGPTDWRAYDTLR- 474

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                 D +VL          G+ S + A  ++G     A  G+   VV D+TPFYAE+G
Sbjct: 475 -----TDSRVL----------GLVSELAA--EEGPTSTPAGPGEITRVVLDRTPFYAESG 517

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G    DG R ++ DVQ+  +G+  H   V  G LR    L   +D + R     
Sbjct: 518 GQVADAGVLTWDGGRAEVLDVQRPVKGLVAHQVRVLEGELREGAELTAEVDREWRLSACQ 577

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG    Q+GS   P  LR D      +++ +   IED  N  +  
Sbjct: 578 AHSGTHVVHAALRQVLGPQALQSGSYNRPGYLRLDFAWQGALSAQQRHDIEDVANAAVRA 637

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V    M   +A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV  + +I
Sbjct: 638 DHRVSATYMTLPEAQAFGALALFGETYGEQVRVVEI----GGPWSRELCGGTHVQGSAQI 693

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             L +  ESS+ +G RR+EA+ G     +L  + + ++ L   LK    ++V RV  +  
Sbjct: 694 GTLALTGESSVGSGSRRVEAVVGLEGFRYLARERDLVRQLGELLKTPTDDLVERVSGMLA 753

Query: 766 EYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             R +    A+ + Q               +  V  ++   + +   +L+++   ++ ++
Sbjct: 754 RLRDVDKELAELRAQQTLAAAGELAAGARDVGGVAVVTGAPTGLAGGDLRTLALDVRGRL 813

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +    +V ++ E    V +V   +   +     A D+ R +A  + GG GGG+P +AQ 
Sbjct: 814 SADRPAVVLLASESGGKVALVTALNPAAQARGLTASDVLRAAAAPV-GGRGGGKPDVAQG 872

Query: 878 GG--PNGNKA-----DQAIAGVA 893
           GG  P G  A     +QA+A  A
Sbjct: 873 GGTDPAGIPAALQAGEQAVATAA 895


>gi|91217166|ref|ZP_01254128.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91184766|gb|EAS71147.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 872

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 320/833 (38%), Positives = 458/833 (54%), Gaps = 80/833 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FLEFF+   H ++ S+ ++  +DPTLMF N+GM  FK  F G   P    VT  QK
Sbjct: 6   LRRQFLEFFKSKSHTIVNSAPIVLKDDPTLMFINAGMNQFKPYFLGNSIPKETRVTDSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFK+ AI  AW+ LT   ++ +  LY
Sbjct: 66  CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEFLTDVLEISKDNLY 125

Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T+++        +D EA+ LWK +  +  DKI+     DNFW M + GPCGP SEI  D
Sbjct: 126 VTIFEGDKVDGLQKDSEAYDLWKTL--VKEDKILLGDKKDNFWEMGDQGPCGPASEIHVD 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + +     +PG    + +  + +EIWNLVF+Q+ ++       LP   IDTGMG ER+ 
Sbjct: 184 LRSKEEKAKIPGKDLVNRDHPQVVEIWNLVFIQYNRKADGSLESLPAKHIDTGMGFERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291
            V+Q KT+NYD D+F  LI+  E +TG  Y   E  +I   RVI DH+R+ +F IADG L
Sbjct: 244 MVVQGKTSNYDTDVFTPLIREIETITGTTYGKTEDTDIA-IRVISDHIRAVTFAIADGQL 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ Y    L    P +  L+  L  +MG A+PELI  K L E  
Sbjct: 303 PSNTGAGYVIRRILRRAIRYGFTFLNIQTPFIYKLVEVLSKQMGDAFPELISQKNLCENV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E++ F KTL++GL LLD +++     +I++G  AF+LYDT G P+D+   IL  +G 
Sbjct: 363 IHEEEKSFLKTLEQGLGLLDSIVNE-SSSKIISGQKAFELYDTFGFPIDLTTLILSEKGY 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A +D   F   L++Q+ R++A      + T+   W  LK      +FIGYD       + 
Sbjct: 422 A-LDQKGFEVQLQKQKQRSKA-----AAQTSSSDWVVLKTD-DQGEFIGYDDTEADVSIT 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           + RKV  +K                            G+  ++VF+ TPFY E GGQ+GD
Sbjct: 475 KYRKVTSKK---------------------------EGELYQLVFNLTPFYPEGGGQVGD 507

Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G     +G  + + D +K+   I +H        L+ +   V  +D   R++ + NH+A
Sbjct: 508 KGYLETPNGDTVFVIDTKKENNQI-IHITKSLPKDLQKDFKAV--VDLSQRQRTASNHTA 564

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL +ILG+HV Q GS +    LRFD +H   +T  EL++IED VN  I +NL  
Sbjct: 565 THLLHQALRSILGTHVEQKGSMVHSGYLRFDFSHYSKLTQEELQAIEDFVNARIKENLTF 624

Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              R +  + AI  GA AL G KY D VR V         +S  LCGGTHV +T ++   
Sbjct: 625 EEERTIPYDVAIDKGAIALFGEKYGDTVRFVKFG------NSKELCGGTHVENTSKLWHF 678

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I +E+S+ +GIRRIEAIT   A+  L  + + L  + S L   Q +V+  VE + EE  
Sbjct: 679 IINNEASVASGIRRIEAITSDAAKEFLTKESDVLSQVKSILNKPQ-DVLKSVESLQEENT 737

Query: 769 KLQLIHAKRKLQLNVEDLSCHK------IADVN---FMSHIISEVDSKELKSV 812
            L+    K   QLNV  L   K      + D+N   F++H ++ +D+  +K +
Sbjct: 738 TLK----KEIEQLNVLKLKQVKTEVQSQLKDINGIQFLAHQVN-LDANAMKDL 785


>gi|159476100|ref|XP_001696152.1| hypothetical protein CHLREDRAFT_119554 [Chlamydomonas reinhardtii]
 gi|158275323|gb|EDP01101.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 879

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 334/917 (36%), Positives = 476/917 (51%), Gaps = 65/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL F++  GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ        TT 
Sbjct: 3   AEIREAFLSFYESKGHTRLPSSSLVP-EDPTVLLTIAGMLQFKPVFLGQAPRKVATATTT 61

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T  F L   R
Sbjct: 62  QKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPAER 117

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           ++++VY+ED EA  +W+ + G++ ++I R+   DNFWS   TGPCGPCSE+++D     P
Sbjct: 118 VWVSVYEEDAEAEAIWRDVVGVAPERIKRMGAADNFWSSGPTGPCGPCSELYYD---FHP 174

Query: 185 --GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G    S E+  R+IE +NLVFMQ  +        L   +IDTGMGLERMA +LQ  +N
Sbjct: 175 ERGTQDASLEDDSRFIEFYNLVFMQLNRCPDGSLEPLAAKNIDTGMGLERMAQILQGVSN 234

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++  +  + G+ Y           +VI DH R+ +++++DG+ P+N GRGY
Sbjct: 235 NYETDLIFPIVAKAAAIAGVDYASAQPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRGY 294

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR +   RLLG  E     +         +  P + +    I + L  E+  F 
Sbjct: 295 VLRRLLRRVVMKGRLLGIREVFTPAVAEVAVALSAACDPAVQRNAQRIYDELAREESLFA 354

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDV-AFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            TL+RG   LD  L              AF LYDT G PL++ Q++  ARG+  +D+  F
Sbjct: 355 TTLERGQKQLDEYLDRAAAGGKAIAGPDAFMLYDTFGFPLELTQELAEARGV-DVDVSGF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              +E QR R++     L   T +    +L    G T F GY   RG             
Sbjct: 414 EAEMEAQRQRSKDSRETL-DLTAQAGLAALAAAVGPTAFTGYSATRG------------- 459

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     +  V+ +++ G  VE   +G + EV+ D TPFYAE+GGQ+GD G     G
Sbjct: 460 ----------AGRVRGLMRGGAPVEVVEAGDRCEVLLDSTPFYAESGGQVGDMGVLTAHG 509

Query: 539 -----IRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  L ++D QK A G +FVH   V+ G LR    +   +D   RR++  +H+ATHL
Sbjct: 510 SGEAAAELSVSDCQKAAGGSVFVHTCEVKAGQLRVGDQVTALVDEDLRRRVRAHHTATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG    Q GS      LRFD   ++ +T+AE+  +E  VN  +A   P+ TR
Sbjct: 570 LQSALKAVLGPDTCQQGSLCNFQRLRFDFNLARGMTAAEVAEVERLVNGWVAAAAPLETR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+   A A+GA A+ G KY+D VRVV V     G+ S  LCGGTHV++T EI    I+S
Sbjct: 630 VMDLAAAKAAGATAMFGEKYDDTVRVVDVP----GI-SMELCGGTHVANTAEIGAFKILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +GIRR+EA+ G  A  +L   D  ++ L+  LK+    V  RV  +  E R+   
Sbjct: 685 ESGIASGIRRVEAVAGPAAVEYLNQVDGLVRGLSGQLKLKPEEVPARVSAMQAELREAAK 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A  K QL V       +      +    +V   EL   ++A  K +Q   + L     
Sbjct: 745 QLADLKAQLAVA--QSQALVSQAVTAPQGGKVLVAELAGGVEA--KALQEAAVKLQEALG 800

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG-----------RPHMAQSGGPN 881
           +  A VL    +D ++   A     + A V  G   G            +P +AQ+GG +
Sbjct: 801 DPAAVVLASRVDDKVNFVAAFSAGAVKAGVQAGKLVGAVAKVCGGGGGGKPALAQAGGKD 860

Query: 882 GNKADQAIAGVASFLKK 898
            +K  +A+A  +  L +
Sbjct: 861 ASKTSEALALASKMLNE 877


>gi|152966976|ref|YP_001362760.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|205830072|sp|A6WCF7|SYA_KINRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151361493|gb|ABS04496.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 893

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 336/927 (36%), Positives = 510/927 (55%), Gaps = 76/927 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF++  H ++PS+SL+  +DP+LMFT +GMVPF    T Q    Y+  T
Sbjct: 2   QTAEIRRRWLDFFERKEHTVVPSASLV-SSDPSLMFTVAGMVPFIPYLTAQVPAPYKRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEFD-- 119
           +VQKC+R      D+D VG+T RH TFF+M GNFSFG YFK  A+  AW+LLT  E D  
Sbjct: 61  SVQKCLRT----LDIDEVGKTTRHGTFFQMNGNFSFGDYFKREAVAFAWELLTTPEADGG 116

Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
              D  RL+ TVY +D+EAF+LW+++ G+ A++I R    DN+W+  + GP GPCSEI+F
Sbjct: 117 LGFDPERLWTTVYLDDDEAFQLWREV-GMPAERIQRRGKADNYWNTGQPGPGGPCSEIYF 175

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLE 231
           D+G    G   G   + +RYIEIWNLVFMQ++    + +        LP  +IDTGMGLE
Sbjct: 176 DRGPAY-GAEGGPEADEDRYIEIWNLVFMQYQLSAVRTKVDFDVEGELPAKNIDTGMGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289
           R+A + Q   N Y+ID  + ++  + +++G +Y     + V  RV+ DH+RS+  LI DG
Sbjct: 235 RVAFLKQGVDNMYEIDEVRPVLDKAAELSGRRYGAVHEDDVRMRVVADHVRSALMLIGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEG GYVLRR++RRA+   RLLG  EP + HLLPA    M ++YP+L      I  
Sbjct: 295 VTPGNEGAGYVLRRLVRRAVRAMRLLGVEEPALPHLLPASMEVMSASYPQLRSDFERISA 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +E++ F +TL  G  + +  ++         L+G+ AF L+DT+G P+D+  ++   
Sbjct: 355 VAYAEEDAFRRTLVSGTAIFETAVAQTKAAGGSSLSGERAFALHDTYGFPIDLTLEMAAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRG 465
            G+ G+D   F   + EQ  RA+A +    +G  +  I+ S  E+  A   F GY+   G
Sbjct: 415 AGV-GVDEPGFRALMAEQVGRAKADAKAKKTGGVDLAIYRSTLEQLPAPVVFTGYEAAAG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++Q G     A +G  VEVV D+TPFYAE G
Sbjct: 474 E-----------------------ARISVVLQGGVSTPSAPAGTDVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G      G  L ++DVQ+   G++VH   V  G L    ++   +D   RR +S
Sbjct: 511 GQLADHGTVTTTSGAVLAVSDVQQPVRGLYVHKGTVTSGELVAGDAVHAVVDAGRRRSIS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H  +   LG   +Q GS   P  +RFD   +  +    ++ IE  VN+ I 
Sbjct: 571 RAHTATHLVHQVVREHLGDTATQAGSQNAPGRMRFDYRSTAQVAGDVVRDIEAVVNERIH 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L V   +M+RE A+ SGA AL G KY ++VRVVS+    G   S  LCGGTH  ++ +
Sbjct: 631 DDLEVSAAVMDRESALNSGAMALFGEKYGEKVRVVSI----GEDWSKELCGGTHTLTSQQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQD--EKLKSLASFLKVSQGNVV 757
           + L+ IVSESSI +G RRIEA+ G  A     R HL+     E +K+    L    G ++
Sbjct: 687 VGLVSIVSESSIGSGARRIEALVGADAFDFLTREHLLVNQLTEVVKARPEELPDRIGALL 746

Query: 758 GRVEEIWEEYRKL---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            R+ +  +E  +L   Q++     L   +      K   V  ++H    V + +L++++ 
Sbjct: 747 TRLGDAEKEIARLRGGQVL----ALAPTIAAKPVDKFG-VRVVTHDAGPVSADDLRTLVL 801

Query: 815 ALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGG 869
            ++ ++   +  ++ + G++K++   V++V T     R+   A +L R +AK L GGGGG
Sbjct: 802 DVRSRLGEERPSVVAVAGVAKDRP--VVVVATNAEARRWGVKAGELVRTAAKTL-GGGGG 858

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+  +AQ GG + +K   A+ G+  F+
Sbjct: 859 GKDDLAQGGGQDPSKVPAALQGIEDFV 885


>gi|254445806|ref|ZP_05059282.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198260114|gb|EDY84422.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 883

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 332/922 (36%), Positives = 477/922 (51%), Gaps = 100/922 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +FL+FF    H ++PS+SL+P + P L+FTN+GM  F   F G+ +     +T  
Sbjct: 4   NQIRQSFLDFFASKQHAIVPSASLMP-DAPNLLFTNAGMNQFVPYFLGERESANPRITDT 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDL++VG    HHTFFEMLGN+S G YFK+ AI+ AW+L+T+ +   + R
Sbjct: 63  QKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSIGDYFKQEAIEWAWELITEVWKFPKER 122

Query: 125 LYITVYDE--------DEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMAETGPCGPC 172
           LY TVY          D+EA+  WK I   +GL     II     DNFW M +TGPCGPC
Sbjct: 123 LYATVYKPGEGDPATFDQEAYDFWKAIFEKAGLDPKVHIIYGNKKDNFWMMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGG-LPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SE+  D     P G   GS  + +    IEIWNLVF+QF    + +   L    +DTGMG
Sbjct: 183 SELHID---LTPAGDTKGSLVNADSPYCIEIWNLVFIQFNATPEGDFVPLKNQHVDTGMG 239

Query: 230 LERMATVLQEKTN---------NYDIDLFKHLIQASEQVTGMKYEGN------NI----- 269
            ER+A ++    N         NY+ DLF  L Q  E+++G  Y+        NI     
Sbjct: 240 FERVAGIMATSKNFTDFSTPPSNYNSDLFDTLFQEFEKLSGHTYQRTLPEDLENISEVEM 299

Query: 270 --VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
             V  RV+ DH+R  S  IADGILP NE R YVLRRI+RRA+ Y R LG        L+P
Sbjct: 300 KDVIFRVLADHIRCLSCSIADGILPGNESRNYVLRRILRRAVMYGRKLGLENGFFAQLVP 359

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
            +  ++G  +PEL   + +I++ ++SE++ FG+TLDRG+ L D + S   +D+I +G  A
Sbjct: 360 IVVAQLGHVFPELKAQEEIIQKIIKSEEDAFGRTLDRGIQLFDKIASE--QDQI-SGLDA 416

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F LYDT+G P+D+ Q +   R +  +DI  F   +E++R +++      G+   + +   
Sbjct: 417 FTLYDTYGFPIDLTQLMARQRNMK-VDIAGFEAEMEKRRQQSKD-----GAKAAQILIAE 470

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
            +     T+F+G++ L       ED         ID+  G                    
Sbjct: 471 RENDAEPTRFVGFNTL-----ADEDEL-------IDVVKG-------------------E 499

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE-RGILR 566
                +VF+ +PFYAE GGQ+GDTG    +     + D  K A G F+H    +   IL 
Sbjct: 500 NNSSYLVFNHSPFYAEMGGQVGDTGSIEFEDRHFDVLDTIKDANGRFLHKVSGDAENILG 559

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              +L+  +D + RR +  +HSATH+LH AL  +LG+HV Q GS +    LRFD  H + 
Sbjct: 560 HHANLI--VDVKRRRSIERHHSATHVLHWALRKVLGTHVHQAGSYVDDQRLRFDFAHFEA 617

Query: 627 ITSAELKSIEDNVND-IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           I   +L  IE   N+ ++A N   V       +       A  G KY D VRVV +    
Sbjct: 618 IKPEQLALIEKLCNEQLLANN--KVNWYETPFNEKPKEVIAFFGDKYGDVVRVVDI---- 671

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G  S  LCGGTHV +TGEI LL I SES I AG RRIEAI G    SH+   +  + S 
Sbjct: 672 -GGFSIELCGGTHVRATGEIGLLKIASESGIAAGTRRIEAIVGDSLYSHINDMEATIASA 730

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
           +  L  +   ++ +++ +     +L  QL   ++K   N+ D       + N +  + ++
Sbjct: 731 SKSLSTAPNELIKKIDIVLARNAELEKQLKSFQQKASGNLADDLLKSATETNGLKLVAAK 790

Query: 804 V---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LS 859
           V   D   L+ +   L  K+  G+++L    K K + V     E +     A D+ R L+
Sbjct: 791 VTASDPNALRQLGATLIGKLGEGVVVLGAEVKGKVSVVAFSSQEAVKAGHKAGDIIRDLT 850

Query: 860 AKVLGGGGGGGRPHMAQSGGPN 881
           AK+   G GGG+P  A  G  N
Sbjct: 851 AKL--DGRGGGKPDFAMGGATN 870


>gi|330752116|emb|CBL87077.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 870

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 342/923 (37%), Positives = 497/923 (53%), Gaps = 86/923 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF    H+++PS+ ++  NDPTLMFTN+GM  FK  F G        V   
Sbjct: 4   AEVRQQFLDFFASKTHKIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNSISKNVRVADT 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFKE AI  AW+LL   + +D   
Sbjct: 64  QKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKEEAIAWAWELLVDVYKIDPSI 123

Query: 125 LYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T+++        +D EA+  W+KI  L  D+I+    +DNFW M + GPCGPCSEI 
Sbjct: 124 LYVTIFEGHEGDGLAKDTEAYDFWEKI--LPEDRILLGNKHDNFWEMGDQGPCGPCSEIH 181

Query: 177 FD-----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            D     + + I G    + +   + +E+WNLVF++F ++  +    LP   +DTGMG E
Sbjct: 182 VDMRSTEEKKAISGASLVNMDH-PQVVEVWNLVFIEFNRKADRSLEKLPAQHVDTGMGFE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289
           R+  VLQ KT+NYD D+F  LI   E  T + Y     ++   RVI DH R+  F +ADG
Sbjct: 241 RLCMVLQNKTSNYDTDVFTPLISKIEVKTNLVYGKEETIDCAMRVIADHARTVFFAVADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L T+MG+ + EL   K L +
Sbjct: 301 QLPSNTGAGYVIRRILRRAIRYGYTFLDLKEPFIFRLVETLETQMGAVFSELKAQKELAK 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             +R E+  F KTL++GL+LLD ++S   K   L G+  F+LYDT+G PLD+   I   +
Sbjct: 361 NVIREEEVSFLKTLNQGLLLLDDLISKT-KGNKLKGEQVFELYDTYGFPLDLTALIAREK 419

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G A +D   F +A+  Q+SR+RA S       TE            T F+GYD L  S  
Sbjct: 420 GFA-VDEAGFEKAMAVQKSRSRAASSSSAEDWTE------INDMPITGFVGYDDLEHSVQ 472

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +   RK+          N V                  SG++ ++VF+ TPFY E GGQ+
Sbjct: 473 LVRYRKI----------NSVK-----------------SGEQFQLVFNATPFYPEGGGQV 505

Query: 529 GDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GD+G  +G DG  + I D  KK   + VH    +     T+ + +  +D + R +   NH
Sbjct: 506 GDSGILLGSDGDIITIEDT-KKENNLIVH--FTKTLPKNTQNTFIAKVDAKERFRSKCNH 562

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H ALST+LG+HV Q GS +    LRFD +H   +++ E+K++E  VN  I + +
Sbjct: 563 SATHLMHQALSTVLGTHVEQKGSMVHGANLRFDFSHFAKLSADEIKAVEAFVNARINEKI 622

Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            +   R +   +A+ASGA AL G KY D VR +          S  LCGGTHV +T +I 
Sbjct: 623 VLEENRSVPVAEAMASGAMALFGEKYGDSVRTIRFG------ESIELCGGTHVKNTADIW 676

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV--------- 757
              IVSES++ +GIRRIEAITG+  +++   Q+  L  +   LK  Q  +          
Sbjct: 677 HFKIVSESAVASGIRRIEAITGEAVQAYFESQEAILNHINENLKHPQDPIKAISSLQAEN 736

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDA 815
             +++  E+  KLQ+   K++LQ         ++  VN +  + +EVD     +K +   
Sbjct: 737 ALLKKEIEKLSKLQIQAVKQELQ--------SQLKSVNGIDFLAAEVDLSPPAIKDLSFE 788

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           L +   +  ++LV     K      +  E + +R  NA  + +   K +  GGGGG+P  
Sbjct: 789 LGQGKNNTFLVLVTRKGGKPVISCYISKELVAERSLNAGAVVKDLGKHI-QGGGGGQPFF 847

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG N +     +A  ASF++
Sbjct: 848 ATAGGKNTDGISAVLAASASFIE 870


>gi|170781160|ref|YP_001709492.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|205830026|sp|B0REK2|SYA_CLAMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169155728|emb|CAQ00849.1| alanine tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 885

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 304/865 (35%), Positives = 460/865 (53%), Gaps = 61/865 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L +F   GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   T
Sbjct: 2   QTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFARAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D++ VGRT RH TFF+M GNFSFG YFKE+AI  AW+LLT       
Sbjct: 61  SVQKCIRT----LDIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADGG 116

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             F  D   L++TVY ED+EA + WK+I+GL  ++I  +  + N+W   + GP GPCSEI
Sbjct: 117 LGFSPDD--LWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229
           FFD+G    G   G + + +RY+EIWNLVFMQ+ +     K +  IL   P  +IDTGMG
Sbjct: 175 FFDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPTRNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287
           LER+A + Q   N Y+ D  + ++  + +++G +Y  +  + V  R++ DH+RSS  L++
Sbjct: 234 LERVAFIKQGVENMYETDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSVMLMS 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGY+LRR+MRR +   RL+G        L PA    M +AYPE+      I
Sbjct: 294 DGVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+E F +TL  G  +LD  +        E + GD AF L+DT G P+D+  ++ 
Sbjct: 354 SRLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D  +F++ + EQR+RA+A +    +   +   +S     G T+F GYD L  
Sbjct: 414 EENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELE- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G  V+ AV+G   EV+  +T  YAE+G
Sbjct: 472 ----------------------TGTTILGLIVGGHSVDHAVAGDIAEVILPETSLYAESG 509

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G  +G G  L++ DVQK  +G+  H   V  G +    +    +D   RR  + 
Sbjct: 510 GQEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTIVDADWRRGATQ 569

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  +LG    Q+GS      +R D   ++ ++ A    IED  N  +  
Sbjct: 570 AHSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSPATRSEIEDIANGAVRD 629

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L VVTR+M  ++A   GA AL G KY D VRVV +    GG  S  LC GTHVSS+ +I
Sbjct: 630 DLQVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +V ESS+ +  RRIE++ G+ A   L  +   +  L S LK  +  +  R+ ++ +
Sbjct: 686 GLINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSSLKTPREQLPDRIADLLQ 745

Query: 766 EY----RKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSK-ELKSVMDALQK 818
                 R++    A+  LQ  V  L     ++  V  +   +  V S  E++ ++  +++
Sbjct: 746 NLKTAERRIADFEAQ-ALQQRVPTLLAQGSRVGSVTLIQESLGSVRSADEVRQLVTLVRE 804

Query: 819 KIQSGIIMLVGISKEKKASVLIVVT 843
           +  S  +++           +IV T
Sbjct: 805 RAGSDPVVVALAGDAGGKPTVIVAT 829


>gi|83814294|ref|YP_445665.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|123528738|sp|Q2S2B6|SYA_SALRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83755688|gb|ABC43801.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 966

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 339/990 (34%), Positives = 509/990 (51%), Gaps = 149/990 (15%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  FL+FFQ  GHE++PS+SL+P  D TL+FTN+GM  FK++F G  ++P  +AV T Q
Sbjct: 23  IRQDFLQFFQAKGHEVVPSASLVPDGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAVDT-Q 81

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + L   RL
Sbjct: 82  KCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAPDRL 141

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y TV++ D+        EA+ LW   + L  ++++   + +NFW M +TGPCGPCSE+  
Sbjct: 142 YATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSELHV 201

Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D    +      G    + +  + +E+WNLVF+Q+  Q       L    +DTGMG ERM
Sbjct: 202 DLRPPEARQETPGRELVNVDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGFERM 261

Query: 234 ATVLQEKTNNYDIDLFKHLIQA------SEQVTGMKYEGNNIVNH----------RVIVD 277
             VLQ K + YD DLF  L+QA       E++ G  Y+  +I +           RV+ D
Sbjct: 262 VAVLQGKESTYDTDLFAPLLQAMADRSPREEIRG--YDDLHIEDDDEHEQVRIALRVVAD 319

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y  + L   EP +  L+  L  +MG  
Sbjct: 320 HIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGGP 379

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-------------------- 376
           +  L + +  IE+ +RSE+E F +TL  G+   + V+ H+                    
Sbjct: 380 FDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALRE 439

Query: 377 ----------------GKDEILN------------GDVAFKLYDTHGLPLDIMQDILCAR 408
                            +++IL+            G +AF L+DT+G P+D+ + +   R
Sbjct: 440 DAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARER 499

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D+  +   ++ Q+ RARA S      +  + W S+     A+ F+GYD       
Sbjct: 500 DL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVSPGE-ASVFVGYD------- 550

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI----VEEAVSGQKVEVVFDQTPFYAEA 524
                                   +A+V   E+    V E    Q+ EV   +TPFYAEA
Sbjct: 551 ------------------------RAVVPDAEVRAVRVVETGDTQQYEVELSRTPFYAEA 586

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG        +Q+ D Q++ E I  H   V+      +  +   +D + R  + 
Sbjct: 587 GGQVGDTGTLRFGDESVQVLDTQREGERI-AH--TVDTLPEPLDGPVEAAVDAERRNHIR 643

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H+ATHL+H  L   LG HV Q GS + PD LRFD +H   +    L+ IE  VN  I 
Sbjct: 644 AHHTATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQ 703

Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           QN+P    R +  ++A+  GA AL   +Y DRVRV++ + +     S  LCGGTHV +TG
Sbjct: 704 QNIPKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDPD----FSMELCGGTHVDATG 759

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI L   +SE S+ +G+RR+EA+ G+ A  H+  + E L       +    ++   + E+
Sbjct: 760 EIGLFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEV 819

Query: 764 WEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE  +L     QL   +   QL+         A V+ ++ +   +D    ++ MD LQ+
Sbjct: 820 QEERDRLAGEVDQLRRGQLSDQLDT--FIAENAASVDGITVVTGRLD----RASMDDLQE 873

Query: 819 -------KIQSGIIMLVGISKE--KKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867
                  K+  G + ++G   E  +KA V+  V +DL+D     A DL       L GGG
Sbjct: 874 LGQQFRDKLGEGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRL-GGG 932

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGGRP +A +GG +    D  + GV + ++
Sbjct: 933 GGGRPSLASAGGRDPEALDTVLDGVPALVR 962


>gi|320528371|ref|ZP_08029533.1| alanyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131285|gb|EFW23853.1| alanyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 900

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 335/916 (36%), Positives = 489/916 (53%), Gaps = 72/916 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL+FF   G  + P +SLIP NDPTL++ N+G+   K  F G EKP    +   
Sbjct: 31  NEVRQKFLDFFASKGCMIEPGASLIPHNDPTLLWINAGVSALKKYFDGSEKPASNRICNA 90

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVGRT RHHTFFEMLGNFS G YFK+ AI  AW+ LT       D 
Sbjct: 91  QKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKKEAITWAWEFLTSPEWIGFDP 146

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +RLY+TVY +D+EA+  W ++ G+    I R  T DNFW +   GP GP +E+++D+GE 
Sbjct: 147 KRLYVTVYPDDDEAYNQWVQV-GMIPSHIRR--TEDNFWEIGR-GPGGPDTELYYDRGEK 202

Query: 183 I-PGG----LPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKMSIDTGMGLERM 233
             P G    L     E +RYIE+WN+VF Q++    + ++ E   LP+ +IDTGMGLER+
Sbjct: 203 YDPEGIGEKLFFEDLENDRYIEVWNIVFSQYDCRPGEVDRHEYKELPQKNIDTGMGLERL 262

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILP 292
             ++Q+   N+D DLF  +I A+E+     Y E    + +RVI DH+R+ +F IADG + 
Sbjct: 263 VCLIQDGETNFDTDLFLPIIHATEKYAKHSYSEKEYKMAYRVIADHIRTVTFAIADGAMF 322

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ Y   LG     M  L+  +   M S YP L +   LIE+ ++
Sbjct: 323 SNEGRGYVLRRVLRRAVRYGIKLGIDGAFMYKLVKVVADIMISYYPYLQEKISLIEKLVK 382

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F KTL  G  LL   L+     +IL G+V FKLYDT+G P ++  +I    G   
Sbjct: 383 QEEESFHKTLANGEALLQNALAEHADTKILPGEVMFKLYDTYGYPKELTTEIAEEEGYR- 441

Query: 413 IDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLL--RGSKF 468
           +D   F++ ++ Q++RAR     + S  G +  +    +E    ++F GY     RG   
Sbjct: 442 VDSEGFDKEMQAQKTRAREARGNIQSMHGQSADLMDFTQE----SKFTGYTDTHSRG--- 494

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                KV+         +GV   V  +  +G+I            + D+T FYAE+GGQ 
Sbjct: 495 -----KVIGL-----FKDGVR--VDTLTDEGDI------------ILDETCFYAESGGQC 530

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D  +  +T+VQK      +HH  +  G +     L    DY+ R++   NHS
Sbjct: 531 ADTGVVWNDHFKANVTNVQKAPHKQPLHHIAIVEGTVSEGNVLEGEYDYEKRQRTRANHS 590

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           + HLL  AL  +LG H++Q GS    +  RFD TH +  T  +L  +E  VN  IA   P
Sbjct: 591 SLHLLQAALKKVLGDHIAQAGSYNCAEYGRFDFTHFEKPTEEQLNEVERLVNKQIALAQP 650

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +VT +M  E A  SGA AL   KY D VRVVS+     G  S   CGGTH ++T ++ + 
Sbjct: 651 IVTEVMAVEAAKNSGAIALFDEKYGDTVRVVSM-----GDFSKEFCGGTHANNTADLCVF 705

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--QG---NVVGRVEEI 763
            I SE SI +GIRRI + T   A      +++ L   A  +K+   QG    +V   EE 
Sbjct: 706 KITSEESIGSGIRRITSETKFDAYKDFKDEEQYLLECAKLMKLQSWQGFKEKLVALQEEN 765

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
             + RK    H + +L L+  D +  K   +N +S ++  +   D+  LK+  + ++ K+
Sbjct: 766 -AQLRKDNDAHKQAEL-LSSADTAVQKAETINGLSCVLLSLDGFDTNSLKTYAENVRNKL 823

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
             G + +   +  K   V       +     A D+ + +A+ L GG GGGRP MAQ+GG 
Sbjct: 824 VDGFVFVSNTTDGKVTFVCASSKTAIAKGKKAGDIVKAAAQ-LTGGNGGGRPDMAQAGGK 882

Query: 881 NGNKADQAIAGVASFL 896
           + +K  +A + V   L
Sbjct: 883 DTSKVQEAHSLVREIL 898


>gi|189501991|ref|YP_001957708.1| alanyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497432|gb|ACE05979.1| hypothetical protein Aasi_0578 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 879

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 329/926 (35%), Positives = 501/926 (54%), Gaps = 86/926 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S+IR  F++FF++  H  + ++ ++   DPTL+FTN+GM  FK+ F  Q++  YQ   + 
Sbjct: 5   SNIRQKFVDFFKQKDHHHVKAAPIVNKEDPTLLFTNAGMNQFKDFFLNQQEAPYQRAIST 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + L Q R
Sbjct: 65  QPCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGEYFKEEAIACAWELLTEVYKLPQER 124

Query: 125 LYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+TV+  DE      D+E+   W+K   +S D+I+     DNFW M +TGPCGPCSEI 
Sbjct: 125 LYVTVFQGDEEESLELDQESLNTWEKY--ISRDRILYGNKKDNFWEMGDTGPCGPCSEIH 182

Query: 177 FD-----------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
            D             E +  G P       + IEIWNLVF+Q+ +    +   LP   +D
Sbjct: 183 VDIRTEEEIQQQAGKELVNTGHP-------QVIEIWNLVFIQYNRLASGQLMELPAKHVD 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSS 283
           TGMG ER+  VLQ K++ YD D+F  LI    +++   Y  +N V+   RV+ DH+R+ +
Sbjct: 236 TGMGFERLTMVLQGKSSTYDTDIFVPLIHNIMRLSHKTYGKDNKVDIAMRVVADHIRAIT 295

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG LP+N   GYV+RRI+RRA+ Y    LG+  P M  L+  L  +  + YP++ Q
Sbjct: 296 FAIADGQLPSNTQAGYVVRRILRRAVRYGYTNLGFETPFMYQLVSILAQQFKNVYPQIKQ 355

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
            +  IE+ ++SE+E F KTL  GL  L+ +   L  +  ++++G  AF+LYDT+G P D+
Sbjct: 356 QQSYIEQVIKSEEESFFKTLAVGLHRLEHISETLNINGQQVIDGPTAFELYDTYGFPPDL 415

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + I   +GL  +D   F +AL+ QR R++  ++ L  G     W  + +   +  FIGY
Sbjct: 416 TRLIAQEKGLE-VDEEGFQKALQNQRIRSQQAAV-LEQGD----WHIVVKDVDSV-FIGY 468

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L                   +L   V    ++I Q+GE +         ++V DQTPF
Sbjct: 469 DQL-------------------ELIAKVIQ-YRSIYQKGEEI--------YQIVLDQTPF 500

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y E GGQ+GDTG  I     + + D +K+ E I  +   +   +  T  ++V   D + R
Sbjct: 501 YPEGGGQVGDTGTLIVGEQIIAVFDTKKEYERIIHYTHELPHDLHATVQAVV---DVKKR 557

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++ NHSATHLLH AL  +LGSH+ Q GS +    LRFD  H   ++  +++ IE  VN
Sbjct: 558 NLIASNHSATHLLHAALRQVLGSHIEQKGSLVNEKLLRFDFPHYTKVSPEQIREIEHIVN 617

Query: 641 DIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  N+ +   R M  EDA + G  AL G KY + VRV++ +       S  LCGGTH 
Sbjct: 618 QKIRANINLHEVRSMLLEDAKSMGVTALFGEKYGEYVRVITFD----PYFSKELCGGTHA 673

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+TG++    I +E+ I AG RRIEAIT   A + ++ Q   L      LK    ++V  
Sbjct: 674 SATGKLGFFKITAETGIAAGTRRIEAITADAAENFIIEQLSILNQATEALK-KPNDLVKS 732

Query: 760 VEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD-A 815
           +  + EE   L+   L +  ++++  +++L  H I  V  +  +I EV    ++++   A
Sbjct: 733 IYHLLEEKANLEKKILSYQAQEVRSVIDNLYQH-IKQVQEIQVLIEEVKVPNVEALKQVA 791

Query: 816 LQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRP 872
           L  +   G   L   S  +++  + + ++E+L+ +   NA  + +  A ++  GGGGG+P
Sbjct: 792 LSFRTNKGPFFLTLTSIIDQQPHIALFISEELIHKTQMNANIIIKELATLI-QGGGGGQP 850

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
             A + G + +  +Q +      L+K
Sbjct: 851 FFATAKGNDASGINQVLVTARHILEK 876


>gi|303277145|ref|XP_003057866.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|313471752|sp|C1MR42|SYAP_MICPC RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|226460523|gb|EEH57817.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 899

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 308/785 (39%), Positives = 434/785 (55%), Gaps = 54/785 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEF++   H  LPSSSL+P  DPT++ T +GM+ FK +F GQE+      TT 
Sbjct: 12  AGIRRRFLEFYEARDHARLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQEERKVPTATTT 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ AI  AW++ TKE+ LD  R
Sbjct: 71  QKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIAWAWEISTKEYGLDASR 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           ++I+V+ ED+EA+ +W+   G+  ++I R+   DNFW+   TGPCGPCSE+++D      
Sbjct: 127 IWISVFREDDEAYAIWRDEIGIPENRIKRMDEADNFWAAGPTGPCGPCSELYWDFHP--E 184

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G+ GS   ++  R+IE +NLVFM+  +        L + +IDTGMGLERMA +LQ K N
Sbjct: 185 RGVDGSEDLDDDSRFIEFYNLVFMESVRDTDGNMKPLKRKNIDTGMGLERMAQILQGKPN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL + +I A+  + G+ Y+  +       +VI DH R+  +LI+DG+LP+N GRGY
Sbjct: 245 NYETDLIRPIIDAAASMAGISYDDADDATKLKLKVIGDHTRAVCYLISDGVLPSNVGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL-----IEETLRSE 354
           ++RR++RR +   RLLG   P            +     E   A +L     I + L  E
Sbjct: 305 IVRRLLRRVVRCGRLLGVKAPDGAGAFTPAIARVAIGLSEACDANVLKSSQKICDELERE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + RF  TL RG  +L  +L+     +     L G+ AF LYDT+G PLDI  D+    G+
Sbjct: 365 ELRFATTLGRGEEILADMLAAAKTKDANAPKLTGEDAFTLYDTYGFPLDITTDVATEAGV 424

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFM 469
             +D+  F +A+   R  +R   + +   T   +  ++ ++ G  T+F GY         
Sbjct: 425 -DVDVDGFEKAMAAARDLSRDARVAVDV-TVGDLLGAIADELGEPTRFTGY-----GSVT 477

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +E  K                 V+A+++ GE V  A +G  VEVV D TPFYAE GGQ+G
Sbjct: 478 EEGVK-----------------VRALLKGGERVASAGAGDTVEVVLDATPFYAEGGGQVG 520

Query: 530 DTGCAI--GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           D G  I   D  +L + D +K A G +FVH  +V  G++    ++  T+   +RR+   N
Sbjct: 521 DEGEIILSDDRGKLVVGDCRKAAGGRLFVHSCVVSEGVVGEGDAVTATVSAASRRRAKAN 580

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL   +G  VSQ GS +  + LRFD       T  EL  +E  VN  I   
Sbjct: 581 HTATHLLQSALKMTIGEDVSQAGSLVNFERLRFDFNAPSAPTPEELARVESLVNGWIGDA 640

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + +    M    A   GA A+ G KY D VRVV V        S  LCGGTHV +T EI 
Sbjct: 641 IDLTAEEMAISRAKEKGATAMFGEKYGDVVRVVDVP-----GVSMELCGGTHVKNTAEIG 695

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              I+SES I AG+RRIEA++G      L  +D  +K+LA  L+V    + GRV  + E+
Sbjct: 696 GFKILSESGIAAGVRRIEAVSGPGVVDLLQERDGTVKALAGSLRVPPEEIAGRVSALMED 755

Query: 767 YRKLQ 771
            +  Q
Sbjct: 756 LKTSQ 760


>gi|260903835|ref|ZP_05912157.1| alanyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 884

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 334/924 (36%), Positives = 504/924 (54%), Gaps = 74/924 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I+  +L++F+ NGH ++PS+S+I  +DP+++F  +GMV F    TG+E   +   T+V
Sbjct: 4   AEIKQRWLDYFEANGHAVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFNRATSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR G    D++ VG+T RH TFF+M GNFSFG YFK  AI+ AW LLT   D     
Sbjct: 63  QKCVRTG----DIEEVGKTTRHGTFFQMNGNFSFGDYFKREAIRFAWGLLTNSVDDGGLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D+  L+ TV+++D E   LW + + +  ++I      DNFW   + GP G CSEI+FD+
Sbjct: 119 FDKNLLWATVHEDDLETIDLWLEETSIPRERIQPRDNEDNFWHTGQPGPGGYCSEIYFDR 178

Query: 180 GE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLE 231
           G    + GG P + E+  RYIEIWNLVFM+FE    + +        LP  +IDTGMGLE
Sbjct: 179 GPDYGVEGG-PVADED--RYIEIWNLVFMEFELSEVRSKVDFDIAGELPAKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADG 289
           R+A +LQ   N Y+ID    +I+A+ +++G +Y  ++   V  RV+ DH+RSS  +I DG
Sbjct: 236 RVAFLLQGVENMYEIDEVFPVIEAASRLSGHRYGADHDADVQMRVVADHVRSSLIIIGDG 295

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGY+LRR++RRA+   RLLG T  ++  LLP     M  +YPEL      I  
Sbjct: 296 VRPGNEGRGYILRRLLRRAVRAMRLLGVTSEVLPELLPVSMESMKLSYPELETDFDRISR 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              +E++ F +TL+ G  L     + L   D+ L+GDVAF L+DTHG P+D+  ++   +
Sbjct: 356 IAYAEEKAFLRTLESGTQLFQNAAASLPASDKTLSGDVAFALHDTHGFPIDLTLEMASEQ 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSK 467
           G+  +D   F   + EQR+RA+A +     G    +  +S   + GA++F+GYD L    
Sbjct: 416 GV-NVDEEGFRALMSEQRTRAKADAKAKKGGGHADLSAYSALLEDGASEFVGYDRLE--- 471

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V+ IV  G   E    GQ  +++ D TPFYAEAGGQ
Sbjct: 472 --------------------ADSRVRGIVVDGLAQEVLTPGQTADLILDLTPFYAEAGGQ 511

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G   G G   ++ DVQ   +G+  H   V  G +     ++  +D+ +R Q S  H
Sbjct: 512 RADIGLIKGHGFTARVLDVQNPIKGLPAHRVEVIDGEIHVGAEVLAVVDHDHRFQGSQAH 571

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHL+H AL  ILG+H  Q GS   P  +RFD +  +  +      IED  N  +  N 
Sbjct: 572 TATHLVHAALREILGTHAVQAGSMNQPGYMRFDYSFPEAPSQQMRAEIEDVANLAVRSNY 631

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T  +  EDA  SGA AL G KY + VRVV +    GG  S  LCGGTHV S+ E+  
Sbjct: 632 EVGTEFLPFEDARKSGAMALFGEKYPNIVRVVDI----GGPFSRELCGGTHVGSSSEVGP 687

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GNVVGRV 760
           + ++SE+S+ +G+RRIEA  G  A   L  +   + SL+  LKV         G+++ ++
Sbjct: 688 ISVLSEASVGSGVRRIEAAVGMDAFRSLAAERSIVSSLSDMLKVPGTDVKERVGDLMSKL 747

Query: 761 EEIWEEYRKL---QLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDA 815
           ++  +E  +L   QL+ +  K   N E +  +   +AD+  ++      ++ ++++V+  
Sbjct: 748 KDAEKEIARLNSQQLLASAGKFLDNAETVGSTLFVVADLGDVT------NAGDIRTVVTD 801

Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           L+ ++  +S +++ +G    K   V+        +   A  L  L+   L GGGGGG+P 
Sbjct: 802 LRGRVNERSAVVLGIGTGNSKPVVVIATTAAAREEGHQAGKLVSLACGEL-GGGGGGKPD 860

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ GG + +    AIA V + L+
Sbjct: 861 LAQGGGSDVSAIPSAIAAVKAALQ 884


>gi|254775877|ref|ZP_05217393.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 900

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 332/920 (36%), Positives = 493/920 (53%), Gaps = 66/920 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI++D+GE
Sbjct: 121 PERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIYYDRGE 180

Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMA 234
               GG P ++E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+ER+A
Sbjct: 181 KFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291
            VLQ   N Y+ DL + +I A        Y+  N    V +R+I DH R+++ LI DG+ 
Sbjct: 239 FVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILIGDGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  ARLL    P++  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDRIARIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L D V S       + ++G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEMASEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D + F + + EQR RA+A +        +   +      G T+F G+D L      
Sbjct: 419 LQ-VDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL------ 471

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + ++L         +G    V  +   G+         +VE+V D+TP YAE+GGQ+ 
Sbjct: 472 SSEARILGI-----FVDG--KRVPVVTHGGD------GADRVELVLDRTPLYAESGGQIA 518

Query: 530 D----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D    +G   G+  R  +TDVQK A+ ++VH   VE G      +++  +D Q RR  + 
Sbjct: 519 DEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPQWRRGATQ 578

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE+  N  +  
Sbjct: 579 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIEEVTNQAVQA 638

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     E A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV ++ +I
Sbjct: 639 DFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGGTHVHNSAQI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 695 GPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 754

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + +L               +I +V  ++  +S  + + +L+S++  ++ K
Sbjct: 755 RLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLRSLVGDIRGK 814

Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + S   ++  I++ +  SV   V      +DL  R N + + +L+A V   G GGG+  +
Sbjct: 815 LGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDL-VKQLAAPV--DGRGGGKADL 871

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           AQ  G +    D A+  V S
Sbjct: 872 AQGSGKDPAGIDAALDAVRS 891


>gi|154508867|ref|ZP_02044509.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798501|gb|EDN80921.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC
           17982]
          Length = 902

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 304/878 (34%), Positives = 476/878 (54%), Gaps = 70/878 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IRT +L++F+K GHE+ PS SL+   +P+++FT +GMVPF    TG E   +    +
Sbjct: 3   TSEIRTRWLDYFEKQGHEIRPSVSLV-SPEPSILFTIAGMVPFIPYITGVEPAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT   D    
Sbjct: 62  VQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEGKY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  R ++T++D+D+EAF +  K  G+    I+R+   +NFW   + GP GPC+E  +D
Sbjct: 118 GLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWHYD 177

Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231
           +G E  P  + G+ + G +RY+E+WNLVF Q+   E   K    +  L K +IDTG GLE
Sbjct: 178 RGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMRGEGSGKDYPLLGELDKKAIDTGAGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHLR 280
           R+A V+Q+K N Y+ID    +I+A+ Q++G +Y             ++ V  RV+ DH+R
Sbjct: 238 RLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVADHVR 297

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL A    M ++YPEL
Sbjct: 298 SSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASYPEL 357

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLP 397
                 I E   +E++ F +TL  G  +LD  ++   + +   +++G  AF L+DT+G P
Sbjct: 358 EINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTYGFP 417

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GAT 455
           +D+  ++   +G++ +D   F   + EQ+ RARA +    +G T+   F   EK   G +
Sbjct: 418 IDLTLEMAAEQGVS-VDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMGGGS 476

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            F+GY                             + V+A++  G     A +  +VEV+ 
Sbjct: 477 TFLGY-----------------------TEQAAEATVEALLVDGVAAPAASAPAEVEVIL 513

Query: 516 DQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +         
Sbjct: 514 DRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKAYAE 573

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R  ++  H+ATH+++  L  ++   ++Q GS  +P  LRFD  H   +  ++L  
Sbjct: 574 IDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQLSD 633

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ +A++L V T +M+ + A  +GA AL G KY   VRVV++    G      LC
Sbjct: 634 IEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTI----GDGFDRELC 689

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV +TG I  + ++SE S+ +G+RRI+A+ G  A      +   +  L+  +     
Sbjct: 690 GGTHVPATGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGGRAD 749

Query: 755 NVVGRVE----EIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKE- 808
            +  R+E    ++ E  ++L+ I   + L    +   S   I  V  ++  + E+ S + 
Sbjct: 750 ELPERIESLLAKLRESEKELEKIRTAQALSQGADLAASAKAIGPVTVVASAVGEMPSADA 809

Query: 809 LKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTE 844
           L+++   ++ ++    G ++ +G     K S+++   E
Sbjct: 810 LRTLALDVRDRLGNDRGTVVALGGVIGGKPSLVVATNE 847


>gi|41407175|ref|NP_960011.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|118466707|ref|YP_882613.1| alanyl-tRNA synthetase [Mycobacterium avium 104]
 gi|48428510|sp|P61705|SYA_MYCPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830149|sp|A0QI75|SYA_MYCA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41395526|gb|AAS03394.1| AlaS [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167994|gb|ABK68891.1| alanyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 900

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 332/920 (36%), Positives = 493/920 (53%), Gaps = 66/920 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI++D+GE
Sbjct: 121 PERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIYYDRGE 180

Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMA 234
               GG P ++E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+ER+A
Sbjct: 181 EFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291
            VLQ   N Y+ DL + +I A        Y+  N    V +R+I DH R+++ LI DG+ 
Sbjct: 239 FVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILIGDGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  ARLL    P++  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDRIARIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L D V S       + ++G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEMASEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D + F + + EQR RA+A +        +   +      G T+F G+D L      
Sbjct: 419 LQ-VDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL------ 471

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + ++L         +G    V  +   G+         +VE+V D+TP YAE+GGQ+ 
Sbjct: 472 SSEARILGI-----FVDG--KRVPVVTHGGD------GADRVELVLDRTPLYAESGGQIA 518

Query: 530 D----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D    +G   G+  R  +TDVQK A+ ++VH   VE G      +++  +D Q RR  + 
Sbjct: 519 DEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPQWRRGATQ 578

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE+  N  +  
Sbjct: 579 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIEEVTNQAVQA 638

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     E A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV ++ +I
Sbjct: 639 DFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGGTHVHNSAQI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 695 GPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 754

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + +L               +I +V  ++  +S  + + +L+S++  ++ K
Sbjct: 755 RLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLRSLVGDIRGK 814

Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + S   ++  I++ +  SV   V      +DL  R N + + +L+A V   G GGG+  +
Sbjct: 815 LGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDL-VKQLAAPV--DGRGGGKADL 871

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           AQ  G +    D A+  V S
Sbjct: 872 AQGSGKDPAGIDAALDAVRS 891


>gi|322694715|gb|EFY86537.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 952

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 332/968 (34%), Positives = 500/968 (51%), Gaps = 104/968 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPV--YQAV 61
           +R  F ++ ++ GH ++PS S++P +DPTL+FTN+GM  FK IF G   Q  P+   +  
Sbjct: 11  VREAFFDYMRQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD
Sbjct: 71  ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY T ++         D+EA +LW  I G+  D+I+     DNFW M + GPCGP S
Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLDI-GMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVFMQF++Q       LP   IDTGMG 
Sbjct: 190 EIHYDK----IGGRNAAHIVNKDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ERM + LQE  +NY  D F  L +  E+VTG+     KY  ++       +RVI DH+R+
Sbjct: 246 ERMVSALQETDSNYATDCFTPLFKQIEEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR--LLGYTEPLMMHLLPALCTEMGSAYPE 339
            SF I DG +P ++GRGYV+RRI+RR + YAR  L          +LPAL + MG  +PE
Sbjct: 306 LSFAITDGAVPNSDGRGYVIRRILRRGVRYARKYLKAEIGSFFSKILPALVSHMGDQFPE 365

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397
           L++ +L I+E L  E+E F +TLDRG    +   +   K+ +  L+GDV ++LYDT G P
Sbjct: 366 LVKKQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKNGVKKLDGDVVWRLYDTFGFP 425

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   RGL  ID I  + A E+ R  ++A    + +       F+  + +   Q 
Sbjct: 426 VDLTQIMAEERGLE-IDEIEVSVAREKAREASKAVKASVDT-------FAKLDVHQIAQL 477

Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
               + R    +KF+K D K   Q     + +G S             +E      + ++
Sbjct: 478 DQQKVARTDDDAKFVKGDSKGKVQL----IFDGKSF--------HNSTKELPKNTAIGIL 525

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE+GGQ+ DTG   I D +  ++ DVQ    G  +H   +E G L +   ++ 
Sbjct: 526 LDKTNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYG-GFILHSGYIEYGALSSGDEVIC 584

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +   EL+
Sbjct: 585 EYDELRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELR 644

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----------- 681
            IE   N+ I +N  + ++ ++ + A    G  A+ G  Y + VRVVS+           
Sbjct: 645 KIETLSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDP 704

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSHL 735
           + ++   +S   CGGTHV  TG I  L +V ES I  GIRRI A TG      QR  +  
Sbjct: 705 KKQEWRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGDAAHQVQREAAEF 764

Query: 736 MGQDEKLKSLA-SFLKVSQGNVVGR----------------------VEEIWEEYRKLQL 772
             + + L+++     K +Q  V+ +                         +  E +K Q 
Sbjct: 765 SKKLDVLEAMPFGPAKDAQTKVISQELSQLVISTLAKDELNTRFQKIATSVVAEQKKRQK 824

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A   +   V+     K AD  F+  +    ++K L  V    Q K ++  + + G S+
Sbjct: 825 AEAGAAVGCVVKHFEEKKEADY-FVGRLPISANAKALTEVFKHFQAKDKTKSVYVFGGSQ 883

Query: 833 EKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E+ A V  + V   L  +   A   A + + V+GG  GG  P   Q  G    K D A+ 
Sbjct: 884 EEGAVVHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEP-TRQGQGTKPEKIDDAVE 942

Query: 891 GVASFLKK 898
               +L++
Sbjct: 943 AARKWLEE 950


>gi|326904170|gb|EGE51103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis W-148]
          Length = 903

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 339/920 (36%), Positives = 497/920 (54%), Gaps = 63/920 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF        G YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFRWPA-IQLGDYFKRGAIELAWALLTNSLAAGGYGLD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 120 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234
           E  P G P  SE+  RY+E+WNLVFMQ E      +++ Q    LP+ +IDTGMG+ER+A
Sbjct: 180 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIA 237

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291
            VLQ+  N Y+ DL + +I    +V    Y+ GN  + V +R+I DH R+++ LI DG+ 
Sbjct: 238 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I    
Sbjct: 298 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++    G
Sbjct: 358 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 417

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR S+  
Sbjct: 418 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 475

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                V  ++ P+ + +GV+               A  GQ+VE+V D+TP YAE+GGQ+ 
Sbjct: 476 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 521

Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D   RR  + 
Sbjct: 522 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 581

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +  
Sbjct: 582 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 641

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     + A A GA AL G  Y D VRVV    E GG  S  LCGGTHVS+T +I
Sbjct: 642 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 697

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 698 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 757

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + ++               +I +V  ++  +S  + + +L+S++  ++ K
Sbjct: 758 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 817

Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           + S   ++  I++ +  +V   V      +DL  R N  DL +  A V   G GGG+  +
Sbjct: 818 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLA-VAVEGRGGGKADL 874

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           AQ  G N    D A+  V S
Sbjct: 875 AQGSGKNPTGIDAALDAVRS 894


>gi|15827174|ref|NP_301437.1| alanyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229652|ref|YP_002503068.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|20532262|sp|Q9CCT0|SYA_MYCLE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13092722|emb|CAC30020.1| alanyl-tRNA synthetase [Mycobacterium leprae]
 gi|219932759|emb|CAR70605.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 908

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 336/931 (36%), Positives = 490/931 (52%), Gaps = 87/931 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF-----DLD 121
           C+R      D+D+VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT  F      LD
Sbjct: 65  CIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             RL+ TVY +D+EA  LW++I+GL  ++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234
           E  P G P  +E+  RY+E+WNLVFMQ E      +++ + R  LP+ +IDTGMG+ER+A
Sbjct: 181 EFGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMGVERIA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------IVNHRVIVDHLRSSSFLIA 287
            VLQ   N Y+IDL + +I          Y+  N        V +R+I DH R+++ LI 
Sbjct: 239 LVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPENEDTNHADNVRYRIIADHSRTAAILIG 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG   P++  L+  +C  MG AYP L+     I
Sbjct: 299 DGVSPVNDGRGYVLRRLLRRIIRSAKLLGIDSPIVGDLMATVCNAMGRAYPGLVTDFDRI 358

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L D V+         ++ G  AF L+DT+G P+++  ++ 
Sbjct: 359 NRIAVAEETAFNRTLTSGSKLFDDVVGATVASGSTVVAGLDAFTLHDTYGFPIELTLEMA 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F++ + +QR RA+  +        +   +      G T+F G+D    
Sbjct: 419 AEAGLT-VDEKGFHELMLQQRQRAKVDAAARKQAHVDLTAYRELVDAGPTEFTGFD---- 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAVSGQ-----KVEVVFDQ 517
            +   E R                  +  I  +G+   +V  AV GQ     +VE+V D+
Sbjct: 474 -ELTTEAR------------------ILGIFVEGKRVPVVAHAVRGQAGITNRVELVLDR 514

Query: 518 TPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           TP YAE+GGQ+ D G   G G     R  +TDVQK A+ + VH   +E G      ++V 
Sbjct: 515 TPLYAESGGQIADAGTISGIGAGASSRAAVTDVQKIAKTLHVHRVNLESGEFVEGDTVVA 574

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +  
Sbjct: 575 VVDPGWRRGAAQGHSGTHIVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGSLTGEQRT 634

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE+  N+ +  +  V T     + A A GA AL G  Y D VRVV    E GG  S  L
Sbjct: 635 QIEEVTNEAVQADFEVHTFTEKLDTAKAMGAIALFGEAYPDEVRVV----EMGGPFSLEL 690

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV +T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS L+V  
Sbjct: 691 CGGTHVHNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLQVPS 750

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI-------ISEVDS 806
             V  RV  + E  +  +    +R  Q NV+  +    A   ++ ++          +  
Sbjct: 751 EEVHARVATLVERLKAAEK-ELERARQANVQAAATKAAAGAEWIGNVRVVVQRMSGPIAP 809

Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKE-KKASVLIVV-----TEDLLDRFNAVDLARL 858
            +L+ ++  ++ K+ S   ++ L+ ++ +   A+V   V      +DL  R N  DL   
Sbjct: 810 DDLRFLVGDIRGKLGSDPAVVALIAVTSDGPTATVPYAVAANPAAQDLGIRAN--DLVEQ 867

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            A V+  G GGG+  +AQ  G +    D A+
Sbjct: 868 LAMVV-DGRGGGKADLAQGSGKDPTGIDAAL 897


>gi|293192679|ref|ZP_06609633.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292820186|gb|EFF79183.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 902

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 297/839 (35%), Positives = 457/839 (54%), Gaps = 67/839 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IRT +L++F+K GHE+ PS SL+   +P+++FT +GMVPF    TG E   +    +
Sbjct: 3   TSEIRTRWLDYFEKQGHEIRPSVSLV-SPEPSILFTIAGMVPFIPYITGVEPAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT   D    
Sbjct: 62  VQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEGKY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  R ++T++D+D+EAF +  K  G+    I+R+   +NFW   + GP GPC+E  +D
Sbjct: 118 GLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWHYD 177

Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231
           +G E  P  + G+ + G +RY+E+WNLVF Q+   E   K    +  L K +IDTG GLE
Sbjct: 178 RGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMRGEGSGKDYPLLGELDKKAIDTGAGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHLR 280
           R+A V+Q+K N Y+ID    +I+A+ Q++G +Y             ++ V  RV+ DH+R
Sbjct: 238 RLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVADHVR 297

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL A    M ++YPEL
Sbjct: 298 SSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASYPEL 357

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLP 397
                 I E   +E++ F +TL  G  +LD  ++   + +   +++G  AF L+DT+G P
Sbjct: 358 EINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTYGFP 417

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GAT 455
           +D+  ++   +G++ +D   F   + EQ+ RARA +    +G T+   F   EK   G +
Sbjct: 418 IDLTLEMAAEQGVS-VDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMGGGS 476

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            F+GY                             + V+A++  G     A +  +VEV+ 
Sbjct: 477 TFLGY-----------------------TEQAAEATVEALLVDGVAAPAASAPAEVEVIL 513

Query: 516 DQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +         
Sbjct: 514 DRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKAYAE 573

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R  ++  H+ATH+++  L  ++   ++Q GS  +P  LRFD  H   +  ++L  
Sbjct: 574 IDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQLSD 633

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ +A++L V T +M+ + A  +GA AL G KY   VRVV++    G      LC
Sbjct: 634 IEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTI----GDGFDRELC 689

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV +TG I  + ++SE S+ +G+RRI+A+ G  A      +   +  L+  +     
Sbjct: 690 GGTHVPTTGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGGRAD 749

Query: 755 NVVGRVE----EIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKE 808
            +  R+E    ++ E  ++L+ +   + L    +   S   I  V  ++  + E+ S +
Sbjct: 750 ELPERIESLLAKLRESEKELEKVRTAQALSQGADLAASAKAIGPVTVVASAVGEMPSAD 808


>gi|213966126|ref|ZP_03394313.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951224|gb|EEB62619.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 886

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 335/913 (36%), Positives = 493/913 (53%), Gaps = 77/913 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F++ F K GH  +PS+SL+  +DP L+F N+GMVPFK  F G E P +   T++QK
Sbjct: 6   IRNRFIQHFVKAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGNETPDFSTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           CVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT       F + 
Sbjct: 65  CVRT----LDIEEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWSLLTGAVEDGGFGIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             +L++TVY +D+EA  +W +  G+  ++I R    DN+WSM   GPCGPCSEIF+D+G 
Sbjct: 121 AEKLWVTVYLDDDEAHDIWHEKVGVPEERIQRRGMADNYWSMGVPGPCGPCSEIFYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234
           E    G P + E+  RYIEIWNLVFM+ E  +   ++ F     LPK +IDTGMG+ER+A
Sbjct: 181 EYGADGGPEADED--RYIEIWNLVFMENERGEGTGKDSFEILGPLPKKNIDTGMGIERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292
            +LQ   N Y+ DL + +I  +E++TG KY  N+  N   RVI DH R+   L+ DG+ P
Sbjct: 239 FLLQGVDNVYETDLLRPVIDEAEKLTGSKYSSNHQDNIRFRVIADHSRTGLMLMLDGVTP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N  RGY+LRR++RR +  ARLLG   P++  L+      M  +YPE+ +    I     
Sbjct: 299 SNSDRGYILRRLLRRIIRSARLLGANGPVLEKLIGIAAETMTPSYPEIAENWNRIRRVAV 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++ F KTL  G  L +   +    +   +L+G  AF L+DTHG P+D+  ++    GL
Sbjct: 359 AEEKAFTKTLSAGEELFERAATKAKAEGKTVLSGHDAFTLHDTHGFPIDLTIEMAEEAGL 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFM 469
             ID   F++ + EQR+RA+A S       T+  ++    +++  T F GYD L      
Sbjct: 419 T-IDREEFDREMAEQRARAKADSQAKKQSHTDLHVYREFIDEH-PTSFTGYDRL------ 470

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  I+  G+    A  G ++EV+ D+TP YAEAGGQL 
Sbjct: 471 -----------------ADESTILGIIADGQKQSFAAEGDEIEVILDRTPLYAEAGGQLA 513

Query: 530 DTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G  + D G  + I DVQK  + +++H  IV  G     +S    +D Q R      H+
Sbjct: 514 DRGRIVTDSGAVVHINDVQKVGKKLWLHKGIVTAGEFTPGVSAEALVDEQWRHGARQAHT 573

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG  V+Q GS   P  LRFD  + + +T  +L+ IE   N+ +  +  
Sbjct: 574 ATHLIHGALRQVLGDTVTQAGSMNKPGYLRFDFKYGEQLTPEQLREIEQITNEAVDNDWA 633

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T  M  E+A A+GA AL    Y D VRVV V    GG  S  LCGGTHVS + +I  +
Sbjct: 634 VNTAEMPLEEAKATGAMALFNENYGDIVRVVEV----GGPFSIELCGGTHVSHSSQIGPV 689

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----- 763
            ++ ESS+ +G+RRIEA +G  +  +L  +    + LA+  K     +  R+  +     
Sbjct: 690 AVLGESSVGSGVRRIEAYSGMDSFRYLSTERLLAERLATEFKAPSAELPDRIAALAEKLK 749

Query: 764 -----WEEYRKLQLI-HAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816
                  +++  QL+ +A   L+      S   I DV ++   + +  + K+++S+ + L
Sbjct: 750 AAEKQLADFKAGQLLANAASHLE------SARTIGDVTYLGLKLPDGTEMKDIRSLANDL 803

Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL-SAKVLGGGGGGGRPH 873
            K++  +  +I L+  +  K      V  E +     A DL +L  A+V   G GGG+P 
Sbjct: 804 AKRLGDRPSVIALISNASGKVPFAASVSDEAVNRGIKAGDLVKLMGAEVG--GKGGGKPA 861

Query: 874 MAQSGGPNGNKAD 886
           MAQ  G + +  D
Sbjct: 862 MAQGSGSDASGID 874


>gi|213692473|ref|YP_002323059.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523934|gb|ACJ52681.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458618|dbj|BAJ69239.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 892

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 335/917 (36%), Positives = 503/917 (54%), Gaps = 70/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +T+ 
Sbjct: 4   ADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSN 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L++T + +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+ D+
Sbjct: 119 FDPEKLWVTTFTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDR 177

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232
           G E    G P + E   R+IEIW+LVF  +E  N + +  L       + +IDTG GLER
Sbjct: 178 GPEYGRDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           +A ++Q K N Y+ D    +I+A+E+++G KY  +    V  RV+ DH+RS+  +++DG+
Sbjct: 236 LAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N GRGYVLRR++RR +   R+LG T+P++  LLP     M ++YPEL      + E 
Sbjct: 296 RPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              E++ F +TL+ G+ +LD  +    K  D +++G  AF L+DT+G P+++  ++   +
Sbjct: 356 AYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQ 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467
           G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY       
Sbjct: 416 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGY------- 467

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526
                          D++    + V  I+Q+G+    AV+G   VEV+ D+TPFYAEAGG
Sbjct: 468 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 511

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  ++ 
Sbjct: 512 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +  
Sbjct: 572 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV   G+I
Sbjct: 632 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 688

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761
            ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV     
Sbjct: 689 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 748

Query: 762 EIWEEYRKL------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           ++ E  R+L      QL  +   L  + +D +      V  + H    VD+   K+V+D 
Sbjct: 749 KLKESDRRLASMYESQLAASVPALVADTKDSAAPVKVAVKNVGH-FGAVDALR-KTVLDV 806

Query: 816 LQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
             +  +    ++ L G++++ K  V +   E        A DL R +AKVL GGGGGG+P
Sbjct: 807 RAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGGGKP 865

Query: 873 HMAQSGGPNGNKADQAI 889
             AQ GG + +K  +A+
Sbjct: 866 DFAQGGGVDASKIGEAL 882


>gi|145224345|ref|YP_001135023.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315444677|ref|YP_004077556.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1]
 gi|205830152|sp|A4TBW4|SYA_MYCGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145216831|gb|ABP46235.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315262980|gb|ADT99721.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1]
          Length = 898

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 331/908 (36%), Positives = 492/908 (54%), Gaps = 70/908 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   T+VQK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+LAW LLT       +  D
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIELAWSLLTNPVSEGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGPCSEI++D+G 
Sbjct: 121 PERLWATVYLDDDEAIELWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPCSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E  +   ++ F     LP+ +IDTGMG+ER+A
Sbjct: 181 DY--GIDGGPEANEDRYIEIWNLVFMQNERGEGTSKDDFEILGPLPRKNIDTGMGVERIA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--VNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I     +    Y +GN+   V +R+I DH R+++ +I DG+ 
Sbjct: 239 CLLQGVDNVYETDLVRPVIDLVAGIAPRGYGQGNHTDDVRYRIIGDHSRTAAIIIGDGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +  EMG +YPEL+     I    
Sbjct: 299 PGNEGRGYVLRRLLRRIIRAAKLLGVEQPIMGELMATVRDEMGPSYPELVTDFERINRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L +       K    +L+GD AF L+DT G P+D+  ++    G
Sbjct: 359 IAEETAFNRTLTAGSRLFEDAAETTRKAGSTVLSGDDAFTLHDTFGFPIDLTLEMAAEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ +D   F   + EQR RA+A +       T+   +      G T+F G+D L      
Sbjct: 419 LS-VDEEGFRGLMAEQRRRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDEL------ 471

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + ++L         +G    V + VQ G+      +  +VE++ +++PFYAE+GGQ+ 
Sbjct: 472 TTEARILGI-----FVDGRRVPVVSHVQGGD------APGRVELILNRSPFYAESGGQIA 520

Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   G G     +  +TDVQK A+ ++ H   VE G      ++V  +D + R   + 
Sbjct: 521 DEGTVTGTGASQTAKAAVTDVQKIAKTLWAHRITVESGEFVEGDTIVAAVDPRWRHGATQ 580

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD      ++  +   IE+  N+ +  
Sbjct: 581 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDDQRSQIEEVTNEAVEA 640

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V       E A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I
Sbjct: 641 DYEVHNFTTELEKAKSMGAMALFGENYPDEVRVVEI----GGPFSIELCGGTHVRSSAQI 696

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RVE + E
Sbjct: 697 GPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSDEVPARVENLVE 756

Query: 766 EYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQ 817
             R       +L+L++A+             +I  +  ++  +   + + +L+S++  ++
Sbjct: 757 RLRAAEKELDRLRLVNARAAAANAA--AGAEQIGGIRLVAQRMAGGISAGDLRSLVGDIR 814

Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG---GGGGGR 871
            K+ S   ++ L+  + +     ++ V +   DR   A DL     KVLG    G GGG+
Sbjct: 815 GKLGSDPAVVALISEADDDTVPFVVAVNQAAQDRGLRANDL----VKVLGAAVNGRGGGK 870

Query: 872 PHMAQSGG 879
             +AQ  G
Sbjct: 871 ADLAQGSG 878


>gi|225423779|ref|XP_002277341.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1002

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 300/766 (39%), Positives = 415/766 (54%), Gaps = 70/766 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
            + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P      +
Sbjct: 60  ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 119

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +A  T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK 
Sbjct: 120 TRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKV 178

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   R+Y T +  DE        EA  +W K   L    ++     DNFW M +TGPC
Sbjct: 179 YKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDTGPC 236

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EI FD+ G      L  + +     IEIWNLVF+QF +++      LP   +DTGM
Sbjct: 237 GPCTEIHFDRIGNRDAASLVNNDD--PTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGM 294

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279
           G ER+ ++LQ K +NYD D+F  +  A +Q TG +     +         + +RV+ DH+
Sbjct: 295 GFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVADHI 354

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E      +  +   MG  +P
Sbjct: 355 RTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDVFP 414

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL Q ++ I E +  E+  FGKTL +G+         + + +ILNG  AF L+DT+G PL
Sbjct: 415 ELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEV-QGKILNGQDAFVLWDTYGFPL 473

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   RGL  +D+  FN AL+E R R+R+       GT                 I
Sbjct: 474 DLTQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGT-----------------I 515

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLT--NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             D    S   K  R V         T      S++KAI    E +E A +G +V +V +
Sbjct: 516 VMDADATSALHK--RGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLE 573

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVE-RGILRTEMSLVL 573
            T FYAE GGQ+ DTG   G     Q+ +VQ    G F+ H  +  E  G       ++ 
Sbjct: 574 TTSFYAEQGGQIFDTGSLEGTSGSFQVCNVQ--IYGGFILHIGSFTEASGRFSVGDKVIC 631

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +DY  R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+    L+
Sbjct: 632 KVDYDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLR 691

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------DG 686
            IE  VN+ I   L V ++  +  DA + +G  A+ G  Y D VRVVS+  +      D 
Sbjct: 692 KIESIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADP 751

Query: 687 GVH-----SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           G       S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T
Sbjct: 752 GNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVT 797


>gi|294507557|ref|YP_003571615.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8]
 gi|294343885|emb|CBH24663.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8]
          Length = 966

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 335/989 (33%), Positives = 503/989 (50%), Gaps = 147/989 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FFQ  GHE++ S+SL+P  D TL+FTN+GM  FK++F G  +  Y      QK
Sbjct: 23  IRQDFLQFFQAKGHEVVSSASLVPEGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAVDTQK 82

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + L   RLY
Sbjct: 83  CLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAPDRLY 142

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            TV++ D+        EA+ LW   + L  ++++   + +NFW M +TGPCGPCSE+  D
Sbjct: 143 ATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSELHVD 202

Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               +      G    + +  + +E+WNLVF+Q+  Q       L    +DTGMG ERM 
Sbjct: 203 LRPPEARQETPGRELVNIDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGFERMV 262

Query: 235 TVLQEKTNNYDIDLFKHLIQA------SEQVTGMKYEGNNIVNH----------RVIVDH 278
            VLQ K + YD DLF  L+QA       E++ G  Y+  +I +           RV+ DH
Sbjct: 263 AVLQGKESTYDTDLFAPLLQAMADRSPREEIRG--YDDLHIEDDDEHEQVRIALRVVADH 320

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y  + L   EP +  L+  L  +MG  +
Sbjct: 321 IRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGGPF 380

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--------------------- 376
             L + +  IE+ +RSE+E F +TL  G+   + V+ H+                     
Sbjct: 381 DGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALRED 440

Query: 377 ---------------GKDEILN------------GDVAFKLYDTHGLPLDIMQDILCARG 409
                           +++IL+            G +AF L+DT+G P+D+ + +   R 
Sbjct: 441 AQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARERD 500

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  +   ++ Q+ RARA S      +  + W S+     A+ F+GYD        
Sbjct: 501 L-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVSPGE-ASVFVGYD-------- 550

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI----VEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +A+V   E+    V E    Q+ EV   +TPFYAEAG
Sbjct: 551 -----------------------RAVVPDAEVRAVRVVETGDTQQYEVELSRTPFYAEAG 587

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG        +Q+ D Q++ E I  H   V+      +  +   +D + R  +  
Sbjct: 588 GQVGDTGTLRFGDESVQVLDTQREGERI-AH--TVDTLPEPLDGPVEAAVDAERRNHIRT 644

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H  L   LG HV Q GS + PD LRFD +H   +    L+ IE  VN  I Q
Sbjct: 645 HHTATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQ 704

Query: 646 NLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N+P    R +  ++A+  GA AL   +Y DRVRV++ + +     S  LCGGTHV +TGE
Sbjct: 705 NIPKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDPD----FSMELCGGTHVDATGE 760

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L   +SE S+ +G+RR+EA+ G+ A  H+  + E L       +    ++   + E+ 
Sbjct: 761 IGLFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQ 820

Query: 765 EEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK- 818
           EE  +L     QL   +   QL+         A V+ ++ +   +D    ++ MD LQ+ 
Sbjct: 821 EERDRLAGEVDQLRRGQLSDQLDT--FIAENAASVDGITVVTGRLD----RASMDDLQEL 874

Query: 819 ------KIQSGIIMLVGISKE--KKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868
                 K+  G + ++G   E  +KA V+  V +DL+D     A DL       L GGGG
Sbjct: 875 GQQFRDKLGQGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRL-GGGG 933

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGRP +A +GG +    D  + GV + ++
Sbjct: 934 GGRPSLASAGGRDPEALDTVLDGVPALVR 962


>gi|118469604|ref|YP_887342.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|205830154|sp|A0QWQ4|SYA_MYCS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118170891|gb|ABK71787.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 896

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 328/909 (36%), Positives = 483/909 (53%), Gaps = 74/909 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWNRATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       +  D
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWTLLTNPVEEGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY +D+EA  LW++++GL A++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERLWATVYLDDDEAIGLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E  +   +E F     LP+ +IDTGMG+ER+A
Sbjct: 181 EY--GVEGGPEANEDRYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGIERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I     V    Y   N    V +R+I DH R+++ +IADG+ 
Sbjct: 239 CLLQGVDNVYETDLLRPVIDKVAAVAPRGYGAGNHDDDVRYRIIADHTRTAAIIIADGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNEGRGYVLRRLLRRIIRAAKLLGVEQPVMGDLIATVRDAMGPSYPELVTDFERINRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L +       K    +L+G  AF L+DT+G P+D+  ++    G
Sbjct: 359 VAEETAFNRTLASGSKLFEDAARATKKSGATVLSGSDAFTLHDTYGFPIDLTLEMAAEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ +D   F   + EQR RA+A +       T+   +      G T+F G+D        
Sbjct: 419 LS-VDQEGFRTLMAEQRQRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFD-------- 469

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVEEAVSGQKVEVVFDQTPFYAEAG 525
                        +LT+   + +  I   G+    +  + +   +VE++ D+TPFYAEAG
Sbjct: 470 -------------ELTS--EATILGIFVDGKRVPVVSHDGLEADRVELILDRTPFYAEAG 514

Query: 526 GQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           GQ+ D G   G G     R  +TDVQK A  ++ H   VE G      ++   +D + RR
Sbjct: 515 GQIADEGTISGTGASGTARAAVTDVQKIARTLWAHRVNVESGEFVEGDTVTAAVDPKWRR 574

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             +  HS TH++H AL  +LG +  Q GS   P  LRFD     P++  +   IE+  N 
Sbjct: 575 GATQGHSGTHMVHAALREVLGPNAVQAGSLNRPGYLRFDFNWQGPLSDDQRTQIEEVTNQ 634

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  +  V T +   E A A GA A+ G +Y D+VRVV +    GG  S  LCGGTHV +
Sbjct: 635 AVEADYEVHTFVTELEKAKAMGAMAMFGERYPDQVRVVEI----GGPFSLELCGGTHVHN 690

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           + +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV 
Sbjct: 691 SAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVA 750

Query: 762 EIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDA 815
            + E  +  +    + +L                +  V  ++  +S  + + +L+S++  
Sbjct: 751 NLVERLKAAEKELDRMRLANARAAAVNAVAGAETVGKVRLVAQRMSGGMSANDLRSLVGD 810

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           ++ K+ S   ++  I++ +  +V  VV      +DL  R N  DL +  A  +  G GGG
Sbjct: 811 IRGKLGSEPAVVALIAEGENDAVPFVVAVNPAAQDLGLRAN--DLVKQFAAPV-NGRGGG 867

Query: 871 RPHMAQSGG 879
           +  +AQ  G
Sbjct: 868 KADLAQGSG 876


>gi|291456669|ref|ZP_06596059.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381946|gb|EFE89464.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 892

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 332/917 (36%), Positives = 504/917 (54%), Gaps = 70/917 (7%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +T+ 
Sbjct: 4   ADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSN 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L++T + +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+ D+
Sbjct: 119 FDPEKLWVTTFTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDR 177

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232
           G E    G P + E   R+IEIW+LVF  +E  N + +  L       + +IDTG GLER
Sbjct: 178 GPEYGRDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           +A ++Q K N Y+ D    +I+A+E+++G KY  +    V  RV+ DH+RS+  +++DG+
Sbjct: 236 LAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N GRGYVLRR++RR +   R+LG T+P++  LLP     M ++YPEL      + E 
Sbjct: 296 RPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
              E++ F +TL+ G+ +LD  +    K  D +++G  AF L+DT+G P+++  ++   +
Sbjct: 356 AYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQ 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467
           G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY       
Sbjct: 416 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGY------- 467

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526
                          D++    + V  I+Q+G+    AV+G   VEV+ D+TPFYAEAGG
Sbjct: 468 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 511

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  ++ 
Sbjct: 512 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +  
Sbjct: 572 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV   G+I
Sbjct: 632 NLAVTTKEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHVDHVGKI 688

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761
            ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV     
Sbjct: 689 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNTLLA 748

Query: 762 EIWEEYRKL------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           ++ E  R+L      QL  A   L  + ++ +      +  + H    VD+   K+V+D 
Sbjct: 749 KLKESDRRLASMYEAQLAAAVPALVEDAKNSAAPVKVAIKNVGH-FGAVDALR-KTVLDV 806

Query: 816 LQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
             +  +    ++ L G++++ K  V +   E        A DL R ++K+L GGGGGG+P
Sbjct: 807 RGQLGEDAPAVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGASKIL-GGGGGGKP 865

Query: 873 HMAQSGGPNGNKADQAI 889
             AQ GG + +K ++A+
Sbjct: 866 DFAQGGGADASKINEAL 882


>gi|184200992|ref|YP_001855199.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|205830074|sp|B2GIA1|SYA_KOCRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|183581222|dbj|BAG29693.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 895

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 328/917 (35%), Positives = 488/917 (53%), Gaps = 67/917 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I   +L +F+   H ++PS+SL+    P  MFT +GMVPF   F GQE P YQ  T+VQK
Sbjct: 6   ITQRWLSYFEARDHHVVPSASLV-SQQPGAMFTIAGMVPFIPYFLGQETPPYQRATSVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG+T RH TFF+M GNFSFG YFK +AI +AW+LLT       F LD
Sbjct: 65  CIRT----LDIDEVGKTARHGTFFQMAGNFSFGDYFKSQAIPMAWELLTTAPEQGGFGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY+ D+E++ LW    GL A +I R+  ++N+W   + GP GP SEIF+D+G 
Sbjct: 121 PERLWVTVYEGDQESYDLWHDTVGLPAQRIQRMGRDENYWDTGQPGPAGPDSEIFYDRGP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFIL---PKMSIDTGMGLERMATV 236
              G   G + + +RYIEIWNLVFMQ++  + N ++  IL   P+ +IDTG+G+ER+A +
Sbjct: 181 RY-GKDGGPAVDDDRYIEIWNLVFMQYQRGEGNGKDYEILGELPRKNIDTGLGVERLAML 239

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFLIA 287
           LQ   N Y+ D  + ++ A+ +++G  Y G         ++ V  RV+ DH+RSS  LIA
Sbjct: 240 LQGVENFYETDQVRPVLDAAAKLSGRTYHGAEKAGEQGYDDDVRMRVVADHVRSSLMLIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGY+LRR++RRA+   RLLG TEP +  LLP     M   YP + +    I
Sbjct: 300 DGVTPGNEGRGYILRRLLRRAVRAMRLLGVTEPCLPVLLPESRDAMKGVYPVVAEDFERI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                +E+  F KT++ G   L+  V    G+   L+G  AF L+DT G P+D+  ++  
Sbjct: 360 SRIAYAEERAFLKTIESGTTRLEHAVEVAKGEQRALSGADAFALHDTFGFPIDLTLEMAE 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G++ +D  +F   + EQR RA+  +        +            ++F GY  L   
Sbjct: 420 EAGVS-VDETAFRALMAEQRQRAQEDARAKKGALADLSELRRMLDDHGSEFTGYTELV-- 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V+AI+  G  V  A  G+ VEVV ++TPFYAEAGG
Sbjct: 477 ---------------------TPTTVRAILSGGVSVPAASEGEHVEVVLERTPFYAEAGG 515

Query: 527 QLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q  D G     DG +L + DVQ+  +G+ VH   V  G +     +   +D + R     
Sbjct: 516 QAADVGTIDSSDGAQLTVEDVQQPVKGLSVHKVTVSAGQVLVGDEVTARVDSRRRHDGEA 575

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG    Q GS      LRFD +H + + + +++ IE   N  I  
Sbjct: 576 AHSGTHVIHAALHDVLGPDAVQRGSFNKEGYLRFDFSHGEALNAGQIQEIEQIANTAIRD 635

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  VVTR M   +A   GA +L G KY D VRVV    E  G  S  LCGGTHV ST ++
Sbjct: 636 DFEVVTREMPLAEAKKLGAMSLFGEKYGDEVRVV----EMNGPWSRELCGGTHVGSTSQL 691

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-----NVVGRV 760
             L +VSE S+ +G RR+EA+ G  + +HL  +   +  L   LKV         +   +
Sbjct: 692 GSLSLVSEQSVGSGNRRVEALVGLNSFNHLAAERTLVNQLTGMLKVQSSAELPERLAATL 751

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE-LKSVMDALQK 818
           +++ E  R+L  +  ++      +      ++  V  + H   E+ S + L+S+   L+ 
Sbjct: 752 DKLKETERQLAGLRQQQLQAQAGQLARDAERVGPVTAVLHDAGEIASADALRSLALDLRT 811

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++ S   +  + G++ ++   V++ V +   D    A  L R +A  L GGGGGG+P +A
Sbjct: 812 RLGSEPAVAAVTGVANDRPL-VVVAVNDAARDAGLAAGQLVRTAATTL-GGGGGGKPDVA 869

Query: 876 QSGGPNGNKADQAIAGV 892
           Q GG +  K   A+A +
Sbjct: 870 QGGGSDAAKIPDALAAI 886


>gi|311742342|ref|ZP_07716151.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313970|gb|EFQ83878.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 886

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 314/865 (36%), Positives = 473/865 (54%), Gaps = 62/865 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL  F+  GH ++PS+ L+  +   L+F N+GMVPFK  F GQE P +   T
Sbjct: 2   DTAEIRRRFLAHFENAGHTVVPSAPLLLDDP-NLLFVNAGMVPFKPYFLGQETPPWPTAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119
           +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW L+T   +   
Sbjct: 61  SVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAITHAWRLITGSINDGG 116

Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             +D   +++TV   D+E+ ++WK+++GL  ++I      DN+W M   GP GPCSEI+ 
Sbjct: 117 LGIDADTIWVTVLHSDQESREIWKRVAGLPDERIQDRGLLDNYWHMGVPGPGGPCSEIYV 176

Query: 178 DQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERF----ILPKMSIDTGMGL 230
           D+G E  P G P   E+  R++EIWNLVFMQ E  +   ++RF     LP  +IDTGMGL
Sbjct: 177 DRGPEFGPDGGPVVDED--RFLEIWNLVFMQEEITDVLAKDRFEVVGALPHQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ+K N Y+ID    +I+ + Q++G  Y  ++   V  RVI DH+RS   L+ D
Sbjct: 235 ERVAYLLQDKRNLYEIDEVYPVIETASQISGRTYGRDHADDVRFRVIADHVRSGLMLMGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RRA+   RLLG+ +P +  LLP     M ++YPEL      IE
Sbjct: 295 GVTPGNEARGYVLRRLLRRAVRSMRLLGFEDPALPLLLPVSLERMKASYPELEADFPRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+E F +TL +G  + +G  + + +     L+GD AF L+DT+G P+D+  ++  
Sbjct: 355 QVAYAEEEAFRQTLGKGTQIFEGAAAAVKQQGGSGLSGDAAFTLHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F   + EQRSRA+A +     G  +  ++ +  +  G T ++ Y     
Sbjct: 415 EQGLS-VDEDGFRALMAEQRSRAKADAKSKKGGHADTAVYRAALDAGGPTDWLAY----- 468

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           S    E R                  V A++  G  V    +G   EVV D+TPFYAE+G
Sbjct: 469 STLTTESR------------------VLALIAGGRTVPAIGAGSVGEVVLDRTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    DG R ++ DVQ+   G+ VH   V  G L  E  L   +D + R     
Sbjct: 511 GQNADAGHLQWDGGRAEVLDVQRPVRGLVVHQVRVLDGELTVESPLEAAVDPEWRLGARQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG    Q+GS   P  LR D   S  ++  +L+ +E+  N  +  
Sbjct: 571 AHSGTHVVHAALREVLGPTALQSGSYNRPGYLRLDYGWSGALSPDQLRGVEEASNRALRA 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPV  + M+  +A   GA AL G  Y + VRVV +    GG  S  LCGGTHV  + +I
Sbjct: 631 DLPVTAQTMSLPEAREWGALALFGETYGEDVRVVEI----GGPWSRELCGGTHVDRSSQI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I S+ S+ +G RR+EA+ G     +L  + + ++ L   LK    +V  RV+++ E
Sbjct: 687 GTVVITSDGSVGSGNRRVEALVGIEGFQYLAKERDVVRQLTDLLKAKPDDVPSRVQDLME 746

Query: 766 EYRKLQLIHAKRK---LQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
             R  +    + K   L     DL+ H   DV  ++ + + +D     +L+++   ++ +
Sbjct: 747 RLRAAEKAAERIKAAELLAGAGDLA-HGAVDVGGVAFVGARLDGVGGGDLRTLALDVRGR 805

Query: 820 I---QSGIIMLVGISKEKKASVLIV 841
           I   +  ++ LVG+  +K A V+ V
Sbjct: 806 IPADRPAVVALVGVVDDKPAVVVAV 830


>gi|301165787|emb|CBW25359.1| alanyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 878

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 329/923 (35%), Positives = 487/923 (52%), Gaps = 78/923 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  FL++F+K+ H  + ++S++P NDPTL+F NSGM P K  F G+E+P  + + 
Sbjct: 5   NSREIREKFLDYFEKHNHLKIKAASVVPQNDPTLLFINSGMAPLKPYFLGKEEPPNKRLC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHH-TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             Q C+R      D+D+VG  +RHH T FEM+G++S G Y+KE A  LA+ LL  E   D
Sbjct: 65  NFQPCIRT----KDIDDVG--DRHHLTIFEMMGSWSIGDYYKELACSLAYGLLVDELGFD 118

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPC 172
            +RLY TVY          D E+ + WKK  G+  D I+ +  +DNFW  A ETGPCGPC
Sbjct: 119 PKRLYFTVYGGNEALGIKPDHESVEAWKKC-GVPEDHIVMLG-DDNFWGPAGETGPCGPC 176

Query: 173 SEIFFDQG-ECIPGGLPGSS-EEGERYIEIWNL-VFMQFEQQNKQERFILPKMSIDTGMG 229
           +E+FFD G E  P   PG   ++  RYIEIWN  VFM+  ++       LP  S+DTG G
Sbjct: 177 TEVFFDCGPEYGPEYKPGKHFDDVSRYIEIWNAGVFMELNKKKDGSFTPLPLKSVDTGSG 236

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIA 287
           LER+A V+    + Y+ DL + L+  S ++  +K +G+       R++ DH+R++ F+++
Sbjct: 237 LERLAMVMNGHDSVYETDLMQPLMDISHKL--LKSDGSEAFTKKARMLTDHIRAAVFILS 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM--MHLLPALCTEMGSAYPELIQAKL 345
           +G+ P+NEG+GY+ RR++R+  C A L+      +    ++  +   M   YP++  AK 
Sbjct: 295 EGVTPSNEGQGYIPRRLIRK--CVAALMAKKASKIDFSEMVDLIVEMMSDYYPQIKSAKE 352

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           +I   L +E   F   +  GL L++  L+ +   ++   G VAF L  THGLPLD+++  
Sbjct: 353 MITYNLNNEINDFIPIVKTGLELIEKELAENKSSNKSFPGKVAFDLVTTHGLPLDVLKSD 412

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  R +  +D   +++  EE R  +R  S    SG  EK+   L  K   T F+GY+   
Sbjct: 413 LSDREIE-LDQAEYDKCYEEHRKASRVISRKGASGDQEKVE-ELVAKLSTTDFVGYE--- 467

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                               T   +S V  +++  E V+    G+       +TPFY E+
Sbjct: 468 --------------------TEETTSKVNLLIKDSEKVDSVKEGESFLFTTVKTPFYGES 507

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G A  D  +++I D  K  + I VH A V  G ++    + L +D + R  + 
Sbjct: 508 GGQIGDCGWATTDSAKVEIVDTMKVGK-IHVHVANVISGEVKDGSEIQLKVDSEVRSDIK 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  ++G H  Q GS +  D LRFD  +   +T  EL  IE   N  I 
Sbjct: 567 RNHSATHLLHAALHKVVGKHAVQKGSLVRSDRLRFDFQNQSAVTKEELDKIEALTNQWIM 626

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    T +++ + AI  GA AL G KY+ +VRV+S      G +S  LCGGTHVS TG+
Sbjct: 627 ENSGSETDLLDYDAAIEKGAIALFGEKYDSKVRVISF-----GENSVELCGGTHVSRTGD 681

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L+ I SESS+  GIRRIEA+TG+ A   L  ++  L+  +  L V       +++E+ 
Sbjct: 682 IGLMLITSESSVAKGIRRIEAVTGREAYKLLQERNNILRKTSELLSVKPSEFESKIQELK 741

Query: 765 EEYRKLQLIHAKRKL------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           ++    +    K           N  ++S  KI    F++ +    D   LK + D L  
Sbjct: 742 KKSSAKKAAPKKVSATDTKFENENKIEVSGQKI----FVAQLNDNADV--LKDLGDQLLA 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K +  II L G +  K       V +DL  +  A DL +   K + GG GGG+PH AQ G
Sbjct: 796 KGEYKIICLAG-NDGKTIRAFSWVGDDLNKKVKAGDLLKELLKPV-GGRGGGKPHFAQGG 853

Query: 879 GPN---GNKADQAIAGVASFLKK 898
            P+     K    I+ V SFLK+
Sbjct: 854 SPDVASMGKIFSNISNVESFLKE 876


>gi|302823356|ref|XP_002993331.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii]
 gi|300138840|gb|EFJ05593.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii]
          Length = 920

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 298/806 (36%), Positives = 451/806 (55%), Gaps = 81/806 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-------- 57
           +IR TFL FF   GH+LLP SSL+P +DPT++ T +GM+ FK IF GQ   +        
Sbjct: 13  AIRRTFLNFFAARGHQLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDNVLLSRA 71

Query: 58  -----YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112
                +    T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFK  AI+ AW+
Sbjct: 72  QVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRWAWE 127

Query: 113 LLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           L T E+ L   R++++VY +D+EA  +W+   G+  ++I ++   DNFW+   TGPCGPC
Sbjct: 128 LATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPCGPC 187

Query: 173 SEIFFDQGECIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           SE++FD     P      ++ G+  R++E +NLVFMQ+ + +  +  +L + +IDTG+GL
Sbjct: 188 SEMYFD---FHPERGTDDADLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIA 287
           ERMA +LQ+  NNY+ DL   +IQ + ++ G+ Y   +       +VI DH R+  +LI+
Sbjct: 245 ERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLIS 304

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PE 339
           DG+ P+N GRGY++RR++RR +   RLLG        +E   +  L  +   M S   P+
Sbjct: 305 DGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVISMSSNVDPD 364

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--------DEILNGDVAFKLY 391
           + Q    I E L  E+ RF +TL+RG  LL   L               +L+G   F LY
Sbjct: 365 VKQNAGRIFEELEKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSTKPVLSGKDVFMLY 424

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHS-LGLGSGTTEKIWFSLK 449
           DT+G P++I +++     +  +D+  F   +E QR +++ AH+ + L +G T     SL 
Sbjct: 425 DTYGFPVEITEEVAGENDVQ-VDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSLV 483

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E    T+F+GY  L                          + V+A++ +G +V E   G 
Sbjct: 484 E----TKFVGYTTLES-----------------------IAEVRALIARGGLVTEVREGD 516

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGIL 565
           +VE+V D TPFYAE+GGQ+GD G  +  G      +Q+ DVQK    + +H  IV++G +
Sbjct: 517 EVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGTM 576

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++   ++   RR+    H+ATHLL  AL  +LGS  SQ GS +  D LRFD T S+
Sbjct: 577 AVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLSR 636

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   E+  +E  VN+ I+  +P+  ++M   +A  SGA A+ G KY ++VRVV V    
Sbjct: 637 KMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVP--- 693

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G+ S  LCGGTHVS+T EI    IV    I +G++RIEA+ G     H+  ++  L+ +
Sbjct: 694 -GI-SKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGNAFIDHIFARENALRQI 751

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            S LK    ++  R+  + +E + L+
Sbjct: 752 CSSLKAKPEDLPARISGLQDELKALK 777


>gi|301604154|ref|XP_002931707.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 968

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 336/970 (34%), Positives = 492/970 (50%), Gaps = 92/970 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            S IR  F++FF++N H  + SS+ +P +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQKFIDFFKENAHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKEF
Sbjct: 67  NRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKEF 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +D  RLY+T +        + D E  ++W  + GL   +I+  +  DNFW M +TGPCG
Sbjct: 127 GIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLPESRILPGSMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI FD+     GG   +   + +    +EIWNLVF+QF ++       LPK SIDTG
Sbjct: 186 PCSEIHFDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A E+ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIEKGTGARPYTGKVGAEDVDGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  ++     L+  +   +G+A+
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFATLVDVVVQSLGNAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+ +F KTL+RG  +LD  ++ LG+ +++ GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINEEETQFLKTLNRGRRILDRKINSLGEHKVIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   I   RGL  +D+ SF    EE+R  A+  S G G+G  + +   +   Y   + 
Sbjct: 422 VDLTSLIAEERGLT-LDLESF----EEERKAAQLKSQGKGTGDEDLLMLDI---YAIEEL 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
               L       K   K       +     + + VKAI +    VEEA +GQ+  +V D+
Sbjct: 474 RSQGLEPTDDLPK--YKYTSNADGVYEFESLIATVKAIRRDKMFVEEASTGQECGLVLDK 531

Query: 518 TPFYAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           T FYAE GGQ  D G  + +      + + T    +  G +V H     G L+    + L
Sbjct: 532 TCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHMGTLYGHLKVGDQVCL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E++
Sbjct: 592 YVDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQEIR 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED----- 685
             E+  NDII +N  V     +  +A A  G  A+    Y D VRVVS  +  ED     
Sbjct: 651 KTEEIANDIIKENKVVYALDCSLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLLADP 710

Query: 686 ----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD-- 739
               G + S   CGGTH+ ++G      IV+E +I  GIRRI A+TG  A+  L  QD  
Sbjct: 711 SSPAGSITSVEFCGGTHLQNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQDAL 770

Query: 740 --------EKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLS 787
                   +K+K   S  K  Q  +    E +      +++K  L    + L+  ++DL 
Sbjct: 771 KVNLSDLEKKVKKQNSPNKDVQKEIADLSENLATASIAQWQKDVLREQLKTLKKTMDDLD 830

Query: 788 CHKIADVN-----FMSHIISE--------------VDSKELKSVMDALQKKIQSGIIMLV 828
               ADV          +I E                +K L   +  L+ +      M+ 
Sbjct: 831 RASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPHTAAMIF 890

Query: 829 GISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            +  +  K + L  V +D  D+    +        L  G GGG+   AQ+ G N     Q
Sbjct: 891 SVDNDAGKITCLCQVPQDTADKGLKANEWVQQVSDLMDGRGGGKDTSAQATGKNVGCLSQ 950

Query: 888 AIAGVASFLK 897
            +     F K
Sbjct: 951 VLKLAEDFAK 960


>gi|317157868|ref|XP_001826622.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40]
          Length = 1015

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 298/772 (38%), Positives = 428/772 (55%), Gaps = 72/772 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59
           S+R  F+++FQKNGH  + S+ ++P +DPTL+FTN+GM  FK+IF G   P      +  
Sbjct: 69  SVRDAFIQYFQKNGHTFVASAPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPQSDFANLKS 128

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           AV T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+L+TK + 
Sbjct: 129 AVNT-QKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKIYG 187

Query: 120 LDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD +RLY+T ++         D EA +LWK + G+  D I+     DNFW M + GPCGP
Sbjct: 188 LDPQRLYVTYFEGSKEGGLSPDLEAKELWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGP 246

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   S   +++    +EIWN VF+Q+ +++ +    LP   +DTGM
Sbjct: 247 CSEIHYDR----IGGRNASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGM 302

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHL 279
           G ER+ +VLQ K++NYD D+F  L Q  + +TG + Y+G   V         +RV+ DH+
Sbjct: 303 GFERLVSVLQNKSSNYDTDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHV 362

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAY 337
           R+ +F I+DG+ P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +
Sbjct: 363 RTLTFAISDGVAPNNEGRGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMF 422

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  + E L  E+  F KTLDRG    +          D+ L+G   ++LYDT G
Sbjct: 423 PEVKRKQQDVMEILDEEEISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFG 482

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +   RGL  ID   F    EE RSRA+  S G      + +   + +  G  
Sbjct: 483 FPVDLTRIMAEERGLR-IDDTEF----EEARSRAKEASKGQKKAAADTVKLDVHD-LGKL 536

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVE 512
           + +  D+ + +   K DR              +++ VKAI          E+   G ++ 
Sbjct: 537 EKMN-DVPKTNDSAKFDR------------GNITAQVKAIYHGKSFHLSTEQIPEGDQLG 583

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           ++ D+T FYAE GGQ  DTG  + DG   L++ DVQ  A G  +H   ++ G L     +
Sbjct: 584 LILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYA-GYVLHTGFMKYGSLSVGDEV 642

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H  P+T  +
Sbjct: 643 ICEYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKD 702

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH- 689
           L+ IED   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E   +  
Sbjct: 703 LERIEDISTEYIRQNCAVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILK 762

Query: 690 ----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                     S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A
Sbjct: 763 NVKDPRWEKVSIEFCGGTHVQKTGDIKELVILEESGIAKGIRRIIAVTGEDA 814


>gi|224014532|ref|XP_002296928.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
 gi|220968308|gb|EED86656.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
          Length = 933

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 299/762 (39%), Positives = 426/762 (55%), Gaps = 71/762 (9%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             S IR+TF+ +FQ K+ H  +PSS   P NDPTL+FTN+GM  FK IF G+  P  +  
Sbjct: 3   TTSKIRSTFISYFQSKHSHTFIPSSPSAPLNDPTLLFTNAGMNQFKPIFLGRAPPGTELA 62

Query: 62  TTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           T       QKC+RAGGKHNDL++VG+   HHTFFEMLG++SFG YFK+ AI  AWDLLT+
Sbjct: 63  TLTRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGSWSFGDYFKKEAIDYAWDLLTE 122

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +++ RLY T +        +ED EA   W +   L  ++++  +  DNFW M +TGP
Sbjct: 123 VYGIEEERLYATYFQGDEALGLEEDTEAKDFWLRY--LPEERVLGCSAKDNFWEMGDTGP 180

Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSID 225
           CGPCSEI +D+ G      L   +E+    IEIWNLVF+QF   N+ E  +  LP   +D
Sbjct: 181 CGPCSEIHYDRIGNRDASAL--VNEDDPDVIEIWNLVFIQF---NRDENGLNPLPAKHVD 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVIV 276
           TGMGLER+ ++LQ K++NYDID F  +  A E+V  +  YEG             +R + 
Sbjct: 236 TGMGLERLCSLLQNKSSNYDIDAFTPIFDAIEKVANVGPYEGKLGEEDKTLKDTAYRAVA 295

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGS 335
           DH R+ +F +ADG +P NEGRGYVLRRI+RRA  Y + +   EP     L+P +    G 
Sbjct: 296 DHARTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFSTLVPVVVEIFGE 355

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            YPELI  +  I E ++ E+E F   LDRG+   +  +S   K +++ GD AF LYDT G
Sbjct: 356 HYPELIANQANIIEIVQEEEEAFSTMLDRGIKYFEEEISD-DKKKLVPGDKAFFLYDTLG 414

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL---GLGSGTTEKIWFSLKEKY 452
            P+D+ + +    G+  +D+  F + +E Q+ R+R   L   GLG    E I  + +  +
Sbjct: 415 FPIDLTELMATEAGMT-VDMKGFEEEMEGQKQRSREARLAAKGLGGQRLELI--AEQTAW 471

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI------VQQGEIVEEAV 506
            A + I  D    SK+              D    V + +KA+      + +G++ +E  
Sbjct: 472 LADEGIA-DTDDSSKY--------------DWDKVVDASIKAVFTSDGFLGEGDVAKE-- 514

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G  V +V D+T FYAEAGGQ  D G    +G  L + DVQ    G  +H  ++ +G + 
Sbjct: 515 -GDTVGLVLDKTSFYAEAGGQDTDLGTISFEGGELFVNDVQAYG-GYILHSGVISKGSVS 572

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             +++   +DY  RR ++ NHS TH+L+ AL  +LG    Q GS    + LRFD +H   
Sbjct: 573 VGIAVKCQVDYARRRDVAPNHSMTHVLNAALREVLGEGCDQRGSQCNDEKLRFDFSHKSA 632

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYED 685
           +++ +L+  E  V D I +NLPV   +M+  DA A  G  A+ G  Y D VRVV V    
Sbjct: 633 MSTEQLRDTEIYVRDTIEKNLPVTADVMSLADAKAIPGVRAMFGEVYPDPVRVVRV---- 688

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           G   S   CGGTH+S+T E     +  E+++  GIRRI A+T
Sbjct: 689 GDDCSVEFCGGTHISNTAEAEAFVLTEETAVAKGIRRITALT 730


>gi|296170783|ref|ZP_06852355.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894598|gb|EFG74335.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 901

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 329/927 (35%), Positives = 497/927 (53%), Gaps = 68/927 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F   GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   T++QK
Sbjct: 6   IRKRFLDHFVTAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTNGVSEGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI++D+GE
Sbjct: 121 PDRIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIYYDRGE 180

Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
               GG P ++E+  RYIEIWNLVFMQ E+     K +  IL   P+ +IDTGMG+ER+A
Sbjct: 181 EFGVGGGPIANED--RYIEIWNLVFMQNERGEGTGKTDFEILGPLPRKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I          Y+    ++ V +RVI DH R+++ LI DG+ 
Sbjct: 239 FILQGVHNVYETDLLRPVIDLVAARAPRGYDAGRHDDDVRYRVIADHSRTAAILIGDGVT 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVADFGRIRRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L D V   +     + ++G+ AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLVAGSKLFDEVAGTTKAAGAKAISGNDAFTLHDTYGFPIELTLEMAAEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D I F + + EQR RA+A +        +   +      G T+F G+D L      
Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL------ 471

Query: 470 KEDRKVLC-----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
             + K+L      ++ P+ +T+G                +     +VE+V D+TP YAE+
Sbjct: 472 SSEAKILGIFVDGKRVPV-VTHGAHP-------------DGAGAHQVELVLDRTPLYAES 517

Query: 525 GGQLGD----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           GGQ+ D    +G   G+  R  +TDVQK A+ ++VH   VE G      ++V  +D + R
Sbjct: 518 GGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVVAAVDPEWR 577

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P++  +   +E+  N
Sbjct: 578 RGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLSEEQRTQVEEVTN 637

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +  +  V T     E A A GA A+ G  Y D VRVV +    GG  S  LCGGTHV 
Sbjct: 638 QAVQADFEVHTFTEQLEKAKAMGAMAMFGEAYPDEVRVVEI----GGPFSLELCGGTHVH 693

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV
Sbjct: 694 NSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSDEVPARV 753

Query: 761 EEIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMD 814
             + E  +  +        A  +           +I +V  ++  +S  + + +L+S+  
Sbjct: 754 AGLVERLKAAEKELERARLAGARAAAANAAAGAERIGNVRVVAQRMSAGMTAGDLRSLAG 813

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871
            ++ K+ S   ++  I++ +  SV   V  +   +     A DL +  A  +  G GGG+
Sbjct: 814 DIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQELGIRANDLIKQLAVTV-DGRGGGK 872

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P +AQ  G + ++ D A+A V S + +
Sbjct: 873 PDLAQGSGKDPSRIDAALAAVRSEIAR 899


>gi|302801948|ref|XP_002982730.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii]
 gi|300149829|gb|EFJ16483.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii]
          Length = 934

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 298/806 (36%), Positives = 450/806 (55%), Gaps = 80/806 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-------- 57
           +IR TFL FF   GH LLP SSL+P +DPT++ T +GM+ FK IF GQ   +        
Sbjct: 26  AIRRTFLNFFAARGHHLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDSVLLSRA 84

Query: 58  -----YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112
                +    T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFK  AI+ AW+
Sbjct: 85  QVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRWAWE 140

Query: 113 LLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           L T E+ L   R++++VY +D+EA  +W+   G+  ++I ++   DNFW+   TGPCGPC
Sbjct: 141 LATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPCGPC 200

Query: 173 SEIFFDQGECIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           SE++FD       G   + + G+  R++E +NLVFMQ+ + +  +  +L + +IDTG+GL
Sbjct: 201 SEMYFDFHP--ERGTDDAVDLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLGL 258

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIA 287
           ERMA +LQ+  NNY+ DL   +IQ + ++ G+ Y   +       +VI DH R+  +LI+
Sbjct: 259 ERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLIS 318

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PE 339
           DG+ P+N GRGY++RR++RR +   RLLG        +E   +  L  +   M S   P+
Sbjct: 319 DGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVVSMSSNVDPD 378

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--------KDEILNGDVAFKLY 391
           + Q    I E L  E+ RF +TL+RG  LL   L               +L+G   F LY
Sbjct: 379 VKQNAGRIFEELDKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSAKPVLSGKDVFMLY 438

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHS-LGLGSGTTEKIWFSLK 449
           DT+G P++I +++     +  +D+  F   +E QR +++ AH+ + L +G T     SL 
Sbjct: 439 DTYGFPVEITEEVAGENDVQ-VDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSLV 497

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E    T+F+GY  L                          + V+A++ +G +V E   G 
Sbjct: 498 E----TKFVGYTTLES-----------------------IAEVRALIARGGLVTEVREGD 530

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGIL 565
           +VE+V D TPFYAE+GGQ+GD G  +  G      +Q+ DVQK    + +H  IV++G +
Sbjct: 531 EVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGTM 590

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++   ++   RR+    H+ATHLL  AL  +LGS  SQ GS +  D LRFD T S+
Sbjct: 591 AVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLSR 650

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   E+  +E  VN+ I+  +P+  ++M   +A  SGA A+ G KY ++VRVV V    
Sbjct: 651 KMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVP--- 707

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G+ S  LCGGTHVS+T EI    IV    I +G++RIEA+ G     H+  ++  L+ +
Sbjct: 708 -GI-SKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGDAFIDHIFARENALRQI 765

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            S LK    ++  R+  + +E + L+
Sbjct: 766 CSSLKAKPEDLPARISGLQDELKALK 791


>gi|294786852|ref|ZP_06752106.1| alanine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226488|ref|ZP_07868276.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485685|gb|EFG33319.1| alanine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315120620|gb|EFT83752.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 903

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 344/929 (37%), Positives = 511/929 (55%), Gaps = 83/929 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   F+ +F+K GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +T+
Sbjct: 3   TSEIAKRFVTYFEKQGHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMTS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFS G YFK+ AI  AWDLLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKKEAIHYAWDLLTSPQDQGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             ++ +L++T Y +DEEA  LWK   G+  + +  +   DNFW+    GP GPC+EI+ D
Sbjct: 118 GFEKDKLWVTTYTDDEEARSLWK-TEGMDPEHMQVLGMEDNFWTTGGPGPGGPCTEIYVD 176

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231
           +G E  P G P +SE   RYIEIW+LVF  FE  N + +  L         +IDTGMGLE
Sbjct: 177 RGPEYGPDGGPIASES--RYIEIWDLVFENFEVDNVKSKTNLHIVGELANKNIDTGMGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ K N Y+ D    +I+ +E+++G KY  +  + V  RV+ DH+RS+  ++ DG
Sbjct: 235 RVAYLLQGKQNIYETDEIFPVIEEAERLSGRKYGDDPEDDVRFRVVADHVRSALMIMGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR++RR++   ++LG  + +  HLLP    +M  +YPEL  +   + E
Sbjct: 295 VRPSNEGRGYVLRRLIRRSIRAMKMLGVEQEVFPHLLPVSEAQMKLSYPELESSFAEVSE 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--------EILNGDVAFKLYDTHGLPLDIM 401
           T   E+  F +TLD+G  +LD  +S   KD         +++G  AF L+DT+G P+++ 
Sbjct: 355 TAFGEEAAFRRTLDQGSTILDVAISQAKKDASEKGQEQPVVSGKEAFTLHDTYGFPIELT 414

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            +I   +G+ G+D  SF + + EQ+ RARA +L              K+++     + YD
Sbjct: 415 TEIAREQGV-GVDDRSFRELMAEQKQRARADAL--------------KKRHNVDLSV-YD 458

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                    + +K L +  PI+ T     +   +++  I ++   V  A +   VEV+ D
Sbjct: 459 ---------DAKKALAK--PIEFTGYKEFSSRGTVLAIIDEETGSVRSASAPATVEVILD 507

Query: 517 QTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +TPFYAE GGQ+ D G    D G  L++ DVQK  + ++V H  +  G L     +  +I
Sbjct: 508 RTPFYAEQGGQMADYGEIESDQGAVLEVDDVQKPVKDLYVQHCRLTEGSLTVGDQVSSSI 567

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  ++  H+ATH+LH  +  +LG   +Q+GS + PD LRFD   SK +T  +L  I
Sbjct: 568 DVDRRIGMTHAHTATHVLHKVVREVLGEKATQSGSVVDPDRLRFDFHWSKALTQDQLGQI 627

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN  I  +L V  + M  +DA+  GA  L G KY D VRVV++   DG   S  LCG
Sbjct: 628 EARVNARIRDDLEVSWKNMPIDDALELGAMHLFGDKYGDIVRVVTIG-NDG--WSRELCG 684

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTH S TG I    ++SESS+  G+RRIEA+ G ++  +   Q + +  LA+ L      
Sbjct: 685 GTHASRTGTIGSFTLISESSVGTGLRRIEALVGAKSYEYNHRQHQVINRLANGLNARADE 744

Query: 756 VVGRV----EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806
           V  RV    E + E   KL  I+ +R++   +  L     S    AD+      +    S
Sbjct: 745 VETRVLGLEESLKEAQAKLASIY-ERQISAMIPALVDQAKSGSPDADLLLAIRNVGSFGS 803

Query: 807 KEL--KSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860
            E   K+V D   +  + ++ ++ L G+S E    V+ V T +   +    A DL R + 
Sbjct: 804 AEALRKAVTDTRAQLGEDKAAVVCLAGVSSETGKPVIFVATNEAARKAGIKAGDLVRSAF 863

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +VL GGGGGG+P  AQ GG + ++ D A+
Sbjct: 864 QVL-GGGGGGKPDFAQGGGQDASRLDAAL 891


>gi|317482215|ref|ZP_07941237.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916353|gb|EFV37753.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 893

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 338/920 (36%), Positives = 507/920 (55%), Gaps = 75/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + + + 
Sbjct: 4   ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+ D+
Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233
           G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GLER+
Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ K N Y+ D    +I+A+EQ++G+KY  N    V  RV+ DH+RS+  +++DG+ 
Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + E+ 
Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++   +
Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467
           G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY       
Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526
                          D++     I   I+Q+G+    AV+G   VEV+ D+TPFYAEAGG
Sbjct: 469 --------------TDMSARAEVI--GIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  ++ 
Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 572

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +  
Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV   G+I
Sbjct: 633 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761
            ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV     
Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820
           ++ E  R+L  ++ + +L  +V  L    +AD  N  + +   V +      +DAL+K +
Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804

Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
                Q G     ++ L G++++ K  V +   E        A DL R +AKVL GGGGG
Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           G+P  AQ GG + +K D+A+
Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883


>gi|23334993|ref|ZP_00120231.1| COG0013: Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|23465456|ref|NP_696059.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|189439479|ref|YP_001954560.1| alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|227545932|ref|ZP_03975981.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|322688960|ref|YP_004208694.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690929|ref|YP_004220499.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|41018234|sp|Q8G5W9|SYA_BIFLO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|23326108|gb|AAN24695.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|189427914|gb|ACD98062.1| Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|227213566|gb|EEI81415.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517003|emb|CBK70619.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum F8]
 gi|320455785|dbj|BAJ66407.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460296|dbj|BAJ70916.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 893

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 338/920 (36%), Positives = 508/920 (55%), Gaps = 75/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + + + 
Sbjct: 4   ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+ D+
Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233
           G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GLER+
Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ K N Y+ D    +I+A+EQ++G+KY  N    V  RV+ DH+RS+  +++DG+ 
Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + E+ 
Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++   +
Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467
           G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY       
Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526
                          D++    + V  I+Q+G+    AV+G   VEV+ D+TPFYAEAGG
Sbjct: 469 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  ++ 
Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 572

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +  
Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV   G+I
Sbjct: 633 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761
            ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV     
Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820
           ++ E  R+L  ++ + +L  +V  L    +AD  N  + +   V +      +DAL+K +
Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804

Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
                Q G     ++ L G++++ K  V +   E        A DL R +AKVL GGGGG
Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           G+P  AQ GG + +K D+A+
Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883


>gi|189217804|ref|NP_001121342.1| alanyl-tRNA synthetase [Xenopus laevis]
 gi|171846704|gb|AAI61712.1| LOC100158432 protein [Xenopus laevis]
          Length = 968

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 308/803 (38%), Positives = 435/803 (54%), Gaps = 86/803 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-- 61
            S IR  F++FF+ NGH  + SS+ +P +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQKFIDFFKDNGHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 62  ---TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKEF
Sbjct: 67  TRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKEF 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +D  RLY+T +        + D E  ++W  + GL+  +I+  +  DNFW M +TGPCG
Sbjct: 127 GIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLAESRILPGSMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI FD+     GG   +   + +    +EIWNLVF+QF ++       LPK SIDTG
Sbjct: 186 PCSEIHFDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGDEDVDGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  ++     L+  +   +G+A+
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFSTLVDVVVQSLGNAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+ +F KTL+RG  +LD  +  LG+ +++ GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINDEETQFLKTLNRGRRILDRKIQSLGEHKVIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   I   RGL  +D+ SF    EE+R  A+  S G G+G                  
Sbjct: 422 VDLTSLIAEERGLT-LDMESF----EEERKAAQLKSQGKGAGDE---------------- 460

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLT--------------NGVSSIVKAIVQQGEIVE 503
              DLL    +  E+ +    +P  DL               + + + VKAI ++   VE
Sbjct: 461 ---DLLMLDIYAIEELRSRGLEPTDDLPKYTYTSNAEGVYEFDNLLATVKAIRREKMFVE 517

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAI 559
           EA +GQ+  +V D+T FYAE GGQ  D G  + +      + + T    +  G +V H  
Sbjct: 518 EASTGQECGLVLDKTCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHVG 577

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
              G L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRF
Sbjct: 578 TLYGNLKVGDQVHLYIDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRF 636

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678
           D T    +T+ E++  E+  NDII +N  V         A A  G  A+    Y D VRV
Sbjct: 637 DFTAKGAMTTQEIRKTEEIANDIIKENKVVYALDCPLATAKAIQGLRAVFDETYPDPVRV 696

Query: 679 VSV--EYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           VS+    ED         G V S   CGGTH+ ++G      IV+E +I  GIRRI A+T
Sbjct: 697 VSIGIPVEDLLADPSSPAGSVTSVEFCGGTHLKNSGHAGPFIIVTEEAIAKGIRRIVAVT 756

Query: 728 GQRARSHLMGQDEKLKSLASFLK 750
           G  A+  L  QD    SL+   K
Sbjct: 757 GAEAQKALRRQDAIKVSLSDLEK 779


>gi|227549179|ref|ZP_03979228.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078739|gb|EEI16702.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 888

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 324/902 (35%), Positives = 494/902 (54%), Gaps = 64/902 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F   GHE +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P + +   T++
Sbjct: 6   IRERFTQHFINAGHEPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFASGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT       + 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKHAWALLTNPVSEGGYG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD +RL++TVY +D+EA  +W+   G+ A++I R+   DNFWSM   GPCGPCSEI++D+
Sbjct: 121 LDPQRLWVTVYLDDDEAAGIWENTIGVPAERIQRMGMEDNFWSMGVPGPCGPCSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLERMA 234
           G    G   G   +  RY+EIWNLVFM+    E   K    I  LPK +IDTGMG+ER+A
Sbjct: 181 GPE-HGKEGGPIADDTRYLEIWNLVFMESIRGEGDKKGFEIIGELPKKNIDTGMGVERVA 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I A+ ++TG +Y   N    V  RVI DH R++  +I DG+ 
Sbjct: 240 CILQGVDNVYETDLLRPVIDAAIELTGARYNAGNTRDDVRFRVIADHSRTAMMIILDGVT 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGY+LRR++RR +  ARLLG T P++   +  +   M  ++PE+   +  I    
Sbjct: 300 PSNEGRGYILRRLLRRIVRSARLLGATAPVLEPFMNTIMDTMTPSFPEIADNRERIVRVA 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F KTL+ G    +   + +       L G  AF+L+DT+G P+D+  ++    G
Sbjct: 360 VAEERAFMKTLESGTHRFEEAAASVKAAGAGTLPGAQAFELHDTYGFPIDLTLEMARESG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+  FN+ +  QR RA+A +     G  ++  +        T+F+G+  L      
Sbjct: 420 LE-VDMDEFNREMALQRERAKADNKAKKQGNLDESLYREWVDSHPTEFVGFSEL------ 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             D  V+                  +V+ GE V E   G +VEV+ D TP YAE+GGQ+G
Sbjct: 473 AHDGTVI-----------------GLVRDGEKVTEVSQGDEVEVILDVTPMYAESGGQMG 515

Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G   +GD + L +TDVQK  + +++H A V+ G L     +   +D   R      H+
Sbjct: 516 DRGRIVVGDTV-LNVTDVQKVGKKLWIHKATVQNGGLDLGQGVTTEVDSSWRHGARQAHT 574

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +L+ I    N  +  +  
Sbjct: 575 ATHLIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYTEQLSDEQLREIATITNQAVDADFA 634

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I  +
Sbjct: 635 VNTIETSLEEAKAMGAMALFGENYGDVVRVVEI----GGPFSIELCGGTHVDHSSQIGPV 690

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ ESS+ +G RRIEA +G  +  +   +      LA+ LK     +  R+ ++ +  R
Sbjct: 691 AVLGESSVGSGARRIEAYSGLESFRYFSREAALASGLAAELKTPTEQLPDRIAQLTDRLR 750

Query: 769 KLQL-IHAKRKLQLNVEDL----SCHKIADVNFMSHIISE-VDSKELKSVMDALQKKI-- 820
             +  + A R+ QL+           ++A  + +S  + + + + +L+++   +++++  
Sbjct: 751 AAEKELAAMRRQQLSSHTAQYVEQAQQVAKFSLVSVKLPDGLGAGDLRTMASDVRERLGA 810

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + G+++L   S + K    + VT+  ++    A DL +L    +  G GGG+P +AQ  G
Sbjct: 811 RPGVVVLAS-SVDGKVPFAVAVTKPAVEAGVKAGDLVKLIGGYV-DGKGGGKPDLAQGSG 868

Query: 880 PN 881
            N
Sbjct: 869 SN 870


>gi|312132886|ref|YP_004000225.1| alas [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773857|gb|ADQ03345.1| AlaS [Bifidobacterium longum subsp. longum BBMN68]
          Length = 893

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 338/920 (36%), Positives = 508/920 (55%), Gaps = 75/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + + + 
Sbjct: 4   ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+ D+
Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233
           G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GLER+
Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ K N Y+ D    +I+A+EQ++G+KY  N    V  RV+ DH+RS+  +++DG+ 
Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + E+ 
Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++   +
Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467
           G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY       
Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526
                          D++    + V  I+Q+G+    AV+G   VEV+ D+TPFYAEAGG
Sbjct: 469 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  ++ 
Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 572

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +  
Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV   G+I
Sbjct: 633 NLAVATKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761
            ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV     
Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820
           ++ E  R+L  ++ + +L  +V  L    +AD  N  + +   V +      +DAL+K +
Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804

Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
                Q G     ++ L G++++ K  V +   E        A DL R +AKVL GGGGG
Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           G+P  AQ GG + +K D+A+
Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883


>gi|239622020|ref|ZP_04665051.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515211|gb|EEQ55078.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 893

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 338/920 (36%), Positives = 508/920 (55%), Gaps = 75/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + + + 
Sbjct: 4   ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119
           QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT   D     
Sbjct: 63  QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+ D+
Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233
           G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GLER+
Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291
           A +LQ K N Y+ D    +I+A+EQ++G+KY  N    V  RV+ DH+RS+  +++DG+ 
Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + E+ 
Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++   +
Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467
           G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY       
Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526
                          D++    + V  I+Q+G+    AV+G   VEV+ D+TPFYAEAGG
Sbjct: 469 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  ++ 
Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAITR 572

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +  
Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTHV   G+I
Sbjct: 633 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761
            ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV     
Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820
           ++ E  R+L  ++ + +L  +V  L    +AD  N  + +   V +      +DAL+K +
Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804

Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
                Q G     ++ L G++++ K  V +   E        A DL R +AKVL GGGGG
Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           G+P  AQ GG + +K D+A+
Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883


>gi|225683316|gb|EEH21600.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 962

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 344/973 (35%), Positives = 494/973 (50%), Gaps = 111/973 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D EA  LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   S   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ER+ ++LQ KT+NYD D+F  L +   ++TG      K+   ++      +RV+ DH+R+
Sbjct: 252 ERLVSILQNKTSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396
           + +    + E L  E+  F KTLDRG  L +         G D +   DV ++LYDT G 
Sbjct: 372 IKRKATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADV-WRLYDTFGF 430

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL  ID    N   EE R RA+  S G G  T + +  ++ +  G  +
Sbjct: 431 PVDLTQLMAEERGLK-ID----NGEFEEARLRAKEASKGQGKLTKDVVKLTVHD-LGLLE 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKVEV 513
            +  D+ +     K  R              ++S +KAI    + V+ +     G++  +
Sbjct: 485 TMD-DVPKTDDSAKFGR------------GNITSQIKAIYHNKKFVDSSKGIPEGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYG-GYVLHTGFMKYGSFNVNDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYED- 685
           + IE    D I QN  V    V   + RE    +G  A+ G  Y D VRVVS  VE E+ 
Sbjct: 651 EEIERISTDYIRQNCAVYGKDVPLSIARE---ITGVRAVFGETYPDPVRVVSVGVELEEI 707

Query: 686 -GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------ 731
              VH       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A      
Sbjct: 708 LKDVHDPRWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRI 767

Query: 732 ---------RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQL 781
                    R   M    K +  A  L+V    +     E  +   K   IH K  + Q 
Sbjct: 768 AKEFGERLKRFEKMELGPKKEMEAKLLQVDLNQLTISSVEKAQFREKFTQIHKKVLEGQK 827

Query: 782 NVEDLSCHKIADV----------NFMSHIISEVD-SKELKSVMDAL---QKKIQSGIIML 827
             + L   K  D           N   H++ ++  S   K+V D+L   + K+Q   + +
Sbjct: 828 AAQKLESKKALDAIMGYFQAPENNDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYV 887

Query: 828 VGISKEKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               KE    V    V E+L  +  +  D A   A V+GG  GG  P ++   G +  K 
Sbjct: 888 FAADKEAGKIVHGCHVAENLSQQGASPNDWANSVANVVGGRAGGKGP-ISIGNGTDAEKL 946

Query: 886 DQAIAGVASFLKK 898
           D AI     +L+K
Sbjct: 947 DDAIKAATEYLEK 959


>gi|46108048|ref|XP_381082.1| hypothetical protein FG00906.1 [Gibberella zeae PH-1]
          Length = 957

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 334/966 (34%), Positives = 495/966 (51%), Gaps = 97/966 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPV--Y 58
            + +R TF E+F++ GH ++PSSS++P NDPTL+FTN+GM  FK IF    G+  P+   
Sbjct: 10  AARVRKTFFEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDPMASL 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +A    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK +
Sbjct: 70  KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWELLTKVY 129

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T ++ DE        EA +LW  + G+  D I+     DNFW M + GPCG
Sbjct: 130 GLDPSRLYVTYFEGDEKLKLEPDLEAKELWISV-GVPEDHILPGNMKDNFWEMGDQGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   SS    +    +E+WN VFMQ+++Q       LP   IDTG
Sbjct: 189 PCSEIHYDK----VGGRNASSLVNMDDPMVVEVWNNVFMQYDRQKDGSLKSLPAKHIDTG 244

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDH 278
           MG ER+ + LQ+  +NY  D F  L Q  ++VTG      KY  ++       +RV+ DH
Sbjct: 245 MGYERLVSALQDTVSNYATDCFTPLFQKIQEVTGARPYTDKYGKDDADGIDTAYRVVADH 304

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R+ SF IADG +P N+GRGYV+RR++RR + YAR     +       +LPAL  +MG  
Sbjct: 305 IRTLSFSIADGAVPNNDGRGYVIRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQ 364

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTH 394
           +PEL++ +  I+E L  E+  F KTLDRG    +   +   K+  + L GDV ++LYDT 
Sbjct: 365 FPELVKKQQDIKEILDEEEVAFAKTLDRGEAQFEKYAAEATKNGAKKLQGDVVWRLYDTF 424

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYG 453
           G P+D+ + +   R L  ID      A ++ R  ++A    + +     +   S  EK  
Sbjct: 425 GFPVDLTRLMAEERNLE-IDDEEVKAAQDKAREASKAVKESVQTFAKLNVHQISELEKDL 483

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
             +    D    +KF+  D     Q     L    +S +K+     ++ E+   G    +
Sbjct: 484 KVERTNDD----AKFLLGDSNAQVQ-----LIYDGTSFLKST---KDVPEKTALG----L 527

Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE+GGQ+ DTG   I D    ++ DVQ    G  +H+  +E G L +   ++
Sbjct: 528 LIDKTNFYAESGGQVADTGRIVIDDVAEFKVLDVQNYG-GYVLHNGYIEYGTLSSGDKVI 586

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NHS TH+L+H+L  +LG  V+Q GS +  D LRFD +H   +   EL
Sbjct: 587 CEYDELRRSPIRNNHSGTHILNHSLREVLGDEVNQKGSLVDSDKLRFDFSHKTGVKIEEL 646

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681
           K IE+  N+ I +   + ++ ++ E A    G  A+ G  Y D VRVVS+          
Sbjct: 647 KKIEEMSNEYIRRGQKIYSKEVDLEKARQIEGCRAVFGETYPDPVRVVSIGKDIDEMLAD 706

Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
            +  +   +S   CGGTHV  TG I  L ++ ES I  GIRRI A TG+ A       DE
Sbjct: 707 PKKPEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREADE 766

Query: 741 KLKSLASF-----------------LKVSQGNVVGRVEEIW-EEYRKLQ-LIHAKRKLQL 781
             K + +                  +++SQ  +    ++ + + Y+K+   + A++K + 
Sbjct: 767 FSKKIDALDQLPLGPEKEAQMKAVSVELSQLTISTLTKDDFNKRYQKINAAVTAEQKKRQ 826

Query: 782 NVEDLSC----HKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             E  +      K  D N     F+  +     SK L  V+   Q K +   + + G SK
Sbjct: 827 KAESKTALDTVKKHFDTNKDAKWFVGRLPVGATSKALMEVVKHYQGKDKEKTVYVFGGSK 886

Query: 833 EKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E+ A    + V T        A   A   ++V+GG  GG  P   Q  G      D+ + 
Sbjct: 887 EEGAVAHGVYVGTHLASQGVTAEQWAASVSEVIGGRSGGKEP-TRQGQGTKPENLDEGVE 945

Query: 891 GVASFL 896
               +L
Sbjct: 946 TATKWL 951


>gi|119025718|ref|YP_909563.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154487461|ref|ZP_02028868.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis
           L2-32]
 gi|205829991|sp|A1A198|SYA_BIFAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118765302|dbj|BAF39481.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154083979|gb|EDN83024.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis
           L2-32]
          Length = 892

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 336/926 (36%), Positives = 506/926 (54%), Gaps = 78/926 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   FL++F+++ H ++PS+SLI  N PT +FT +GMVPF     G++ P    + +
Sbjct: 3   TSEIAKRFLDYFEQHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKHRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +G    + GG P + E   RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 177 RGPKYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG TEP+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTEPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  ++    G  ++++G+ AFKL+DT+G P++I  ++  
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDMAVTKAKQGGSDLVSGEDAFKLHDTYGFPIEITLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  +D   F + + EQ+SRARA +L         +  S+ + +  T     D L G 
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALK----KRHNVDLSVYDDFKKTLLQPIDFL-GY 467

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAG 525
             M    KVL                  I+Q+G+    AV+G   +EV+ D+TPFYA+AG
Sbjct: 468 TDMSARAKVL-----------------GIMQEGKGSVPAVTGPANIEVILDRTPFYAQAG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID + R  ++
Sbjct: 511 GQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLERRGAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VN+ + 
Sbjct: 571 RSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNAVEARVNEKLR 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTH+   G+
Sbjct: 631 ENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHIDHVGK 687

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--- 761
           I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  +      +  RV    
Sbjct: 688 IGAINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDMVNARPDELAERVNMLL 747

Query: 762 -EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDALQK 818
            ++ E  R+L  ++ + +L  +V  L     A     S    +V  K +      DAL+K
Sbjct: 748 AKLKESDRRLAAMY-ESQLAASVPTLVAEAKA-----SSAPVKVAKKNVGHFGSFDALRK 801

Query: 819 KI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867
            +     Q G     ++ L G++++ K  V +   E    +   A DL R ++KVL GGG
Sbjct: 802 TVLDVRGQLGEDAPVVVALAGMNEDGKPMVAVATNEAARKQGIKAGDLVRGASKVL-GGG 860

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVA 893
           GGG+P  AQ GG +  K D+A+  +A
Sbjct: 861 GGGKPDFAQGGGADATKIDEALEALA 886


>gi|239980567|ref|ZP_04703091.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291452426|ref|ZP_06591816.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291355375|gb|EFE82277.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 740

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 292/772 (37%), Positives = 423/772 (54%), Gaps = 53/772 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FL+ F   GH  +PS+ L P  DPTL+F N+GMVPFK   TG+    +   T
Sbjct: 2   RTADIRSRFLDHFTARGHTPVPSAPL-PTPDPTLLFVNAGMVPFKPYLTGEVPAPWPRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKCVR      D++ VGRT RH +FF+M GNFSFG YFKE AI LAW+L T       
Sbjct: 61  SVQKCVRT----LDIEEVGRTTRHGSFFQMAGNFSFGDYFKEEAIALAWELSTTPVADGG 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           + LD  R+++TV+  D EA  LW++ +GL   +I+     DNFWSM   GPCGP SE+++
Sbjct: 117 YGLDPARIWVTVHHTDTEARALWRRTAGLPDARIVDRGDEDNFWSMGVPGPCGPSSELYY 176

Query: 178 DQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGL 230
           D+G    P G P   E+  R++E WNLVFMQ E+     K    IL   P  +IDTG+GL
Sbjct: 177 DRGPAFGPEGGPAVDED--RFMEFWNLVFMQDERGEGHGKSGYPILGELPHRNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ERMAT+LQ+K N Y+ID  + ++ A+ ++TG +Y  +    V  RV+ DH+R++  L+AD
Sbjct: 235 ERMATLLQDKPNLYEIDETRPVLDAAAELTGTRYGSDAAADVRLRVVADHVRTALMLLAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RRA+   R LGY +P +  LLP     M   YPE+ ++   I 
Sbjct: 295 GVSPTNEGRGYVLRRMLRRAVRSVRQLGYPDPALPALLPVARDLMACGYPEVAESFPRIA 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E   +E+E F  TL +G  +LD  ++ +  +    L G  AF+L+DT+G P+D+  ++  
Sbjct: 355 EQAYAEEEAFRATLQQGTTVLDTAVAKVRAEGGTALPGAQAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT--EKIWFSLKEKYGATQFIGYDLLR 464
            +G+  +D   F   +E+QR RARA +    SG T       ++ +  G T+++ ++ L 
Sbjct: 415 EQGVE-VDRAGFTALMEDQRERARADARARKSGGTGDTSALRAVLDASGPTEWLAWEKLT 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V+A++     +  A +GQ   VV D+TPFYAE+
Sbjct: 474 -----------------------TRATVRAVLGAEGPLPVATAGQLATVVLDRTPFYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D G   G  +  ++ DVQ+   G+ VH   V  G L     +  T+D + R    
Sbjct: 511 GGQAADAGHLTGASVEAEVVDVQRPLPGLVVHRVRVLAGELAPGDEVEATVDPEWRLGAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH+LH AL  +LG    Q+GS   P  LR D      +T A    +E+  N  + 
Sbjct: 571 QAHSGTHVLHAALRQVLGPAALQSGSYNRPGHLRLDFPWRGALTPAARSEVEEAANQALR 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++LPV  R M   +A   GA AL    Y + VRVV +    GG  S  LCGGTHV+ T +
Sbjct: 631 RDLPVGVRWMPLAEARELGALALFDETYGEEVRVVEI----GGPWSRELCGGTHVAHTSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           I ++ +  E+S+ AG+RR+EA  G     +L  + +    LA  L   +  +
Sbjct: 687 IGVIALTGEASVGAGMRRLEAAVGIEGFGYLARERDLAAQLAQQLGAPRAEL 738


>gi|213648094|ref|ZP_03378147.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 465

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/471 (52%), Positives = 324/471 (68%), Gaps = 20/471 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +D   F  A+EEQR RAR  S G G+     I         A++F GYD L
Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHL 464


>gi|169603389|ref|XP_001795116.1| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15]
 gi|160706385|gb|EAT88464.2| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15]
          Length = 960

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 292/768 (38%), Positives = 419/768 (54%), Gaps = 65/768 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 15  VRQTFLDYFKKNGHSFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFASLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+L+TK + +D
Sbjct: 75  ANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELMTKVYGID 134

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY+T +      + D EA +LWK  +G+  D I+     DNFW M + GPCGPCSE+
Sbjct: 135 PNRLYVTYFEGADGLEPDLEAKELWKS-AGVPEDHILPGDMKDNFWEMGDQGPCGPCSEV 193

Query: 176 FFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            +D  E + G    +S+    +    IEIWN VFMQ+ ++  +    LP   IDTGMG E
Sbjct: 194 HYDLREPVDGKYRNASDLVNKDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGMGFE 253

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSS 282
           R+ +VLQ+K +NYD D+F  L +  + +TG + Y G       + I   +RV+ DH R  
Sbjct: 254 RLVSVLQKKMSNYDTDVFTPLFKRIQDITGARPYNGKFGKEDPDGIDTAYRVVADHTRMM 313

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPEL 340
           SF IADG +P N GRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+
Sbjct: 314 SFAIADGGVPNNVGRGYVVRRVLRRGARYARNYFGVEIGNFFSKIIPTLVEQMGDMFPEI 373

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
            + +  I E L  E++ F K+LDRG  +    ++   K     L GD  ++LYDT+G P+
Sbjct: 374 KKKQQDIIEILDEEEKAFAKSLDRGETIFKKYVAKAQKAGSNDLPGDDVWRLYDTYGFPV 433

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + +    GL   D     + +EE + +AR  S G  +     + F + +        
Sbjct: 434 DLTKLMAEENGLNIND-----KEVEEAQEKAREASKGDKAAAGVVVKFDVHDLAALDSMD 488

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEVVF 515
             D+ +     K  R+             +++ +KAI    + ++   E   G++  V+ 
Sbjct: 489 --DVPKTDDSFKYGRE------------NITTTIKAIYHNKKFLKSTSEVPEGEQFGVLL 534

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG  + DG   + + +VQ  A G  +H   ++ G L+    ++  
Sbjct: 535 DKTNFYAEQGGQEYDTGRLLIDGEAEISVDNVQVYA-GYVLHTGYLKYGELKVGSEVIAE 593

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L++AL   LG+ V Q GS + P+ LRFD +H   +T AELK 
Sbjct: 594 FDELRRNPIRNNHTGTHVLNYALRETLGNEVDQKGSLVAPEKLRFDFSHKAGLTDAELKK 653

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
           +ED  +D I QN  V  + +    A    G  A+ G  Y D VRVVS           V+
Sbjct: 654 VEDISSDYIRQNAEVYAKDVPLAQAKEIRGLRAVFGETYPDPVRVVSVGVPIEDLLADVK 713

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            E     S   CGGTHV  TG+I  L I+ ES I  GIRR EA   QR
Sbjct: 714 NEKWDKLSIEFCGGTHVLKTGDIKELVILEESGIAKGIRRQEAYNVQR 761


>gi|187250451|ref|YP_001874933.1| alanyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|205830087|sp|B2KAQ0|SYA_ELUMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|186970611|gb|ACC97596.1| Alanyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 868

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 321/900 (35%), Positives = 500/900 (55%), Gaps = 82/900 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR +FL FF+  G  ++ SSSLIP  DPTL+FT++GMV FK  F G +K +++AVT  QK
Sbjct: 6   IRASFLNFFKSKGCTVVASSSLIPQADPTLLFTSAGMVQFKANFLGLDKSLHRAVT-CQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR      D+D+VG TNRH TFFEMLGNFSFG YFKE+AI  AW+ LT+   +   +LY
Sbjct: 65  CVRT----TDIDSVGFTNRHLTFFEMLGNFSFGDYFKEQAINWAWEYLTQTLQIPAEKLY 120

Query: 127 ITVY-----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           +++Y     + D EA+  W  +  L  +KI  +   DNFW+M  TGPCGPCSEI++D G+
Sbjct: 121 VSIYKGGIAERDNEAYNFW--LKHLPKEKIFELGEKDNFWTMGPTGPCGPCSEIYYDFGD 178

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             C         + G R++EIWN+VF QF++++      L + +IDTGMGLER+   +Q 
Sbjct: 179 KGCKNKNCNIECDCG-RFVEIWNIVFTQFDRKDDGSIVPLSQKNIDTGMGLERLVMAMQN 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEG 296
             + ++ DLF   I  ++++  +K EG     I   R++ DH+RSS FLI++GILP+NEG
Sbjct: 238 VQSPFETDLFTPTINEAKKL--LKIEGKIKEEISTLRIVSDHIRSSVFLISEGILPSNEG 295

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGY+LRR++RRA+ Y +L G   P +  L+  +    G  YPE+   K  I   +++E+E
Sbjct: 296 RGYILRRLIRRALRYGKLAGVKGPFLHLLVSVIDLHFGEIYPEIRNNKNYISSVIKTEEE 355

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F KTL+ G   L+ ++    K   ++G+ AF LY+T G P+++ ++I  A+GLA +D  
Sbjct: 356 AFFKTLENGEERLEDIIKKSKK--TISGENAFYLYETFGFPVELTKEIALAKGLA-LDEE 412

Query: 417 SFNQALEEQRSRARAHSLGLGSG---TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           SF +A +E R ++R+++           +KI  SLK       F+GY+ ++         
Sbjct: 413 SFEKAKKEAREKSRSYADEFSKEKLVVLQKIENSLK-----NTFVGYEQIQTK------- 460

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S ++  +  + E V+E +SG     V D+TPFYA  GGQ+GD G 
Sbjct: 461 ---------------SKVLIVLNDKFEQVKE-LSGPGY-AVLDKTPFYATGGGQMGDRGA 503

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            +  DG  L ++  +K    I + HA+   G+L+    + + ID  NR++ + NH+A HL
Sbjct: 504 FSWKDGQAL-VSTAEKPLSNIIL-HAVEVSGVLKEGSEIEVKIDPVNRKKTAANHTAVHL 561

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           ++ AL  ++G  V Q GS ++ D  RFD T     TS +L  + +  N+ + +  PV   
Sbjct: 562 INEALRQVIGESVHQAGSFVSADVFRFDYTAPHAPTSEQLARVFEMANNAVIRAHPVNCE 621

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLY 709
           I   EDA   GA  L+G +Y D  R V V     E    +S  LCGGTHV++T EI+ + 
Sbjct: 622 IRPLEDAKKLGAVTLVGEQYADPARFVMVGANFNEPSLKYSLELCGGTHVNNTSEIITVI 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR- 768
           ++ E ++ AG+RRIE + G  A  +L      L ++A  L+ S   V  RV  + E+ + 
Sbjct: 682 LIKEGALSAGVRRIEGVAGIAAIDYLKENTHALSAMAKTLETSLKEVPARVNSVLEDLKA 741

Query: 769 -KLQLIHAKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            K ++   ++KL        Q+  + L+  KI     +S      + KEL+++ D+L +K
Sbjct: 742 AKKEIASLRQKLLTGGSGGTQVKEDVLNGKKI-----ISMKAEGANPKELRTLADSLSQK 796

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSG 878
            +  +I++   + ++++    VV +      +A  LA+ L+ K+   G  GG+   AQ G
Sbjct: 797 HKDAVIVIAVDNGDRRS---FVVKKAEGSNTDACTLAKGLAGKM--EGSAGGKADFAQGG 851


>gi|315604258|ref|ZP_07879324.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313964|gb|EFU62015.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 901

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 296/877 (33%), Positives = 471/877 (53%), Gaps = 69/877 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IRT +L++F   GH + PS SLI   +P+++FT +GMVPF     G E   +   T+
Sbjct: 3   TSEIRTRWLDYFASKGHHVAPSVSLI-SPEPSILFTVAGMVPFIPYILGTESAPWPRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT       +
Sbjct: 62  VQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDYAWELLTTPQARGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T++++DE +F  W K  G+  +++ R+   +  WS  + GP G C EI +D
Sbjct: 118 GLDGDRLWMTIWEKDEVSFNHWTKTIGVDPERVQRLPFEEISWSTGQPGPAGACCEIHYD 177

Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLER 232
           +G    P G P     G+R++EIWNLVF +F +   + R       L K +IDTG GLER
Sbjct: 178 RGPAYGPDGGPIVDVAGDRFLEIWNLVFDEFVRGEGEGRDFELVGTLDKTAIDTGAGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHLRS 281
           +A ++Q+K N Y+ID    +I+A+++++G  Y             ++ V  RV+ DH+RS
Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIEAAQEMSGKTYGLGAAGPNAGGAYDDDVRMRVVADHVRS 297

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  +  +  LL A    M  +YPEL 
Sbjct: 298 ALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVEDAALPTLLTASKNVMSLSYPELD 357

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPL 398
                I++   +E++ F +TL  G  +LD  ++   +     +++G  AF L+DT+G P+
Sbjct: 358 SNWETIQDVAYAEEDAFRRTLSAGTTILDAAVASAKETTGAPVISGASAFSLHDTYGFPI 417

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQ 456
           D+  ++   +G+A +D   F   + EQ+ RARA +    +G T+   F   EK   G + 
Sbjct: 418 DLTLEMAAEQGVA-VDEEGFRSLMAEQKERARADARSKKTGHTDVRVFHEIEKQMGGGST 476

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GY                             + V+A++  G     A +  +VEV+ D
Sbjct: 477 FLGY-----------------------TEEAADATVQALLVDGASAPAASAPAEVEVILD 513

Query: 517 QTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +         I
Sbjct: 514 RTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGTMSVGEKAYAQI 573

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  ++  H+ATH+++  L +++    +Q GS  +P  LRFD  HS  + +++L  I
Sbjct: 574 DGARRLAIARAHTATHMVYAGLRSVVSKDATQAGSENSPSRLRFDFRHSSAVDASQLGDI 633

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ +A++L V T  M+ ++A A GA AL G KY  RVRVV++    G      LCG
Sbjct: 634 EALVNEKLAEDLTVTTEEMSLDEAKAQGAIALFGEKYGSRVRVVTI----GDGFDRELCG 689

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV +TG I  + ++ E SI +G+RRI+A+ G  A      +   +  L+  +      
Sbjct: 690 GTHVPTTGHIGRITLLGEGSIGSGVRRIDALVGDGAYEFQAKEHALVAQLSHLVGGRAEE 749

Query: 756 VVGRVEEIWEEYR----KLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKE-L 809
           +  R+E +  + R    +L+ +  ++ L    E   S   +  VN +  ++  + S + L
Sbjct: 750 LPERIENLLAKLRDSEKELEKVRTEQALSRGSELAASARAVGAVNLVGAVVGAMPSADAL 809

Query: 810 KSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTE 844
           +++   ++ ++  + G ++ +G     K S+++   E
Sbjct: 810 RTLALDVRDRLGNERGAVVALGGIVAGKPSLVVATNE 846


>gi|254821812|ref|ZP_05226813.1| alanyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 904

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 336/935 (35%), Positives = 499/935 (53%), Gaps = 92/935 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPEYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK RAI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRRAIELAWTLLTNSVEQGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++ TVY +D+EA +LWK+I+GL  ++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERIWATVYFDDDEAVQLWKEIAGLPDERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233
              + GG P ++E+  RYIEIWNLVFMQ E  +   +E F     LP+ +IDTGMG+ER+
Sbjct: 181 EFGVEGG-PIANED--RYIEIWNLVFMQNERGEGTGKEDFEILGPLPRKNIDTGMGVERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGN--NIVNHRVIVDHLRSSSFLI 286
           A +LQ   N Y+ DL + +I A        Y     EGN  + V +RVI DH R+++ LI
Sbjct: 238 AFILQGVHNVYETDLLRPVIDAVAARAPRGYGLSGPEGNHDDDVRYRVIADHSRTAAILI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+     
Sbjct: 298 GDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVADFDR 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V   +     + ++G  AF L+DT+G P+++  ++
Sbjct: 358 IRRIAVAEETAFNRTLAAGSKLFDEVAGTTKASGAKAISGSDAFTLHDTYGFPIELTLEM 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D + F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 418 ASEAGLQ-VDEVGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDEL- 475

Query: 465 GSKFMKEDRKVLC-----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                  + K+L      ++ P+ +T+G   +                  +VE+V D+TP
Sbjct: 476 -----TSEAKLLGIFVDGKRVPV-VTHGTEGV-----------------DRVELVLDRTP 512

Query: 520 FYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            YAEAGGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +
Sbjct: 513 LYAEAGGQIADEGTISGTGASGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAV 572

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D Q RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD      ++  +   I
Sbjct: 573 DPQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDEQRTQI 632

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+  N  +  +  V T     E A A GA A+ G +Y D VRVV +    GG  S  LCG
Sbjct: 633 EEVTNQAVQADFEVHTFTEQLEKAKAMGAIAMFGERYPDEVRVVEI----GGPFSLELCG 688

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    
Sbjct: 689 GTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLESFRHLAKERALMAGLASSLKVPSDE 748

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQ----------LNVEDLSCHKIADVNFMSH-IISEV 804
           V  RV  + E     +L  A+++L+                   +I +V  ++  +   +
Sbjct: 749 VPARVANLVE-----RLKAAEKELERARLAGAKAAATDAAAGAERIGNVRVVAQRMTGGM 803

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLS 859
            + +L+S++  ++ K+     ++  I+  +  SV   V      +DL  R N + + +L+
Sbjct: 804 TAGDLRSLVGDIRGKLGGDPAVVALIADGEGGSVPYAVAANPAAQDLGLRANDL-VKKLA 862

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           A V   G GGG+  +AQ  G +    D A+A + S
Sbjct: 863 AAV--DGRGGGKADLAQGSGKDPTGIDAALAAIRS 895


>gi|240170724|ref|ZP_04749383.1| alanyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 904

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 338/925 (36%), Positives = 499/925 (53%), Gaps = 72/925 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPYPTATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWSLLTNGVAAGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             RL+ TVY +D+EA  LW+ ++GL  ++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERLWATVYLDDDEAAGLWQDVAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
           +  P G P  +E+  RY+E+WNLVFMQ E+     K++  IL   P+ +IDTGMG+ER+A
Sbjct: 181 DYGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291
            VLQ+  N Y+ DL + ++ A   V    Y+  N    V +R+I DH R+++ LI DG+ 
Sbjct: 239 LVLQDVHNVYETDLLRPVVDAVALVAARPYDAGNHADDVRYRIIADHSRTAAILIGDGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+     I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLNIDTPIVGDLMATVRDAMGPSYPELVSDFDRINRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLASGSRLFDEVAGTTKAKGATVVSGSDAFTLHDTYGFPIELTLEMAAESG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D   F + + EQR RA+A +       T+   +      G T+F G+D L      
Sbjct: 419 LR-VDEAGFRELMAEQRRRAKADAAARKHAHTDLTAYRELVDAGPTEFTGFDEL------ 471

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             + ++L         +G    V A   +G+    A +G +VE+V D+TP YAE+GGQ+ 
Sbjct: 472 ASEARILGI-----FVDGKRVPVVAHGSEGQ----AANGDRVELVLDRTPLYAESGGQIA 522

Query: 530 D----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D    +G   G   R  +TDVQK A+ ++VH   VE G      +++  +D   RR  + 
Sbjct: 523 DEGTISGTGSGGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD +   P+T  +   IE+  N+ +  
Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGPLTEDQRTHIEEVTNEAVQA 642

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     E A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I
Sbjct: 643 DFEVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSLELCGGTHVESSAQI 698

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + +
Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSDEVPTRVANLVD 758

Query: 766 EYRKLQLIHAKRKLQ----------LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMD 814
                +L  A+++L+                   +I +V  ++  IS  + S +L+S++ 
Sbjct: 759 -----RLKAAEKELERVRLANARAAAVNAAAGAERIGNVRVVAQRISGGITSADLRSLVG 813

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGG 869
            ++ ++ S   ++  I++ +  SV   V      +DL  R N + +  L+A V   G GG
Sbjct: 814 DIRGRLGSDPAVIALIAEGENDSVPYAVAANPAAQDLGIRANEL-IKPLAAAV--DGRGG 870

Query: 870 GRPHMAQSGGPNGNKADQAIAGVAS 894
           G+  +AQ  G      D A+  V S
Sbjct: 871 GKADLAQGSGKKPAGIDAALDAVRS 895


>gi|226288201|gb|EEH43713.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 962

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 342/973 (35%), Positives = 493/973 (50%), Gaps = 111/973 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D EA  LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   S   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L +   ++TG      K+   ++      +RV+ DH+R+
Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396
           + +    + E L  E+  F KTLDRG  L +         G D +   DV ++LYDT G 
Sbjct: 372 IKRKATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADV-WRLYDTFGF 430

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL  ID    N   EE R RA+  S G G  T + +  ++ +  G  +
Sbjct: 431 PVDLTQLMAEERGLK-ID----NGEFEEARLRAKEASKGQGKQTKDVVKLTVHD-LGLLE 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKVEV 513
            +  D+ +     K  R              ++S +KAI    + V+ +     G++  +
Sbjct: 485 TMD-DVPKTDDSAKFGR------------GNITSQIKAIYHNKKFVDSSKDIPEGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYG-GYVLHTGFMKYGSFNINDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYED- 685
           + IE    D I QN  V    V   + RE    +G  A+ G  Y D VRVVS  VE E+ 
Sbjct: 651 EEIERISTDYIRQNCAVYGKDVPLSIARE---ITGVRAVFGETYPDPVRVVSVGVELEEI 707

Query: 686 -GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------ 731
              VH       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A      
Sbjct: 708 LKDVHDPRWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRI 767

Query: 732 ---------RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQL 781
                    R   M    K +  A  L+V    +     E  +   K   IH K  + Q 
Sbjct: 768 AKEFGERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREKFTQIHKKVLEGQK 827

Query: 782 NVEDLSCHKIADV----------NFMSHIISEVD-SKELKSVMDAL---QKKIQSGIIML 827
             + L   K  D               H++ ++  S   K+V D+L   + K+Q   + +
Sbjct: 828 AAQKLESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYV 887

Query: 828 VGISKEKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               KE    V    V E+L  +  +  D A   A V+GG  GG  P ++   G +  K 
Sbjct: 888 FAADKEAGKIVHGCHVAENLSQQGASPNDWANSVANVVGGRAGGKGP-ISIGNGTDAEKL 946

Query: 886 DQAIAGVASFLKK 898
           D AI     +L+K
Sbjct: 947 DDAIKAATEYLEK 959


>gi|296122797|ref|YP_003630575.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015137|gb|ADG68376.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 870

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 322/913 (35%), Positives = 486/913 (53%), Gaps = 75/913 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L+FF   G    PS  L+P +DPT++FT +GM  FKN F G     +   TT QK
Sbjct: 6   LREKYLDFFVGKGCLRRPSDVLVPKDDPTVLFTPAGMNQFKNQFLGIGPLDFTKATTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+ NVG T+ HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   L+  R
Sbjct: 66  CLRTG----DISNVGVTSYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLGLEPSR 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE--TGP---CGPCSEIFFDQ 179
           L +T Y +D+EA  +W+   GL + +I R    +NFW       GP   CGPCSEI++  
Sbjct: 122 LTVTAYLDDDEAVGIWQNEIGLDSKQITREDEYENFWPAGSPTNGPDGVCGPCSEIYYTP 181

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237
               P G         + +EIWNLVF QF +       +  LPK +IDTGMGLER A V+
Sbjct: 182 ----PSG---------KKVEIWNLVFTQFNRVGDPPNNLRPLPKKNIDTGMGLERTAAVM 228

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ID+ + L     ++ G+KY+  + V    R I DH+R+ +F I +G +P  E
Sbjct: 229 QGFESNYEIDILRPLCDRGGEILGVKYDFASPVGRPLRRIADHVRACTFAIHEGCVPGPE 288

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
              Y++R ++RRA     LLG  EP +  L+P +   M   YPEL Q    +   + SE+
Sbjct: 289 KENYIIRLLLRRASMEGFLLGKREPFLSQLVPMIAEVMRKPYPELHQTIEAVSHVIESEE 348

Query: 356 ERFGKTLDRGLV----LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++F   ++RGL     L+D   S       L+GD AF L+ T G  +++ + +    G++
Sbjct: 349 KQFLGVVERGLTKFRKLVDQARS--ANRTSLSGDEAFDLHQTDGFLIELTETLAAQEGVS 406

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+  F +  EE + +A        S  +E    +LK K G T+F+GY+ +        
Sbjct: 407 -VDMARFKECREEAK-KASGRGAFADSVMSEGPIDALK-KSGGTEFLGYEAIESK----- 458

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGD 530
                             + ++ I+   ++ E   S    + +V D+TPFY E+GGQ+GD
Sbjct: 459 ------------------ATIRGIIADKKLAESYSSPLVTIGIVLDKTPFYGESGGQVGD 500

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG          + D QK  E +FVH   ++ G L+    +   +D   R  +   HSAT
Sbjct: 501 TGTIRTASGEFTVYDTQKDGE-LFVHIGQLKAGSLKVGEEVTAGVDAHRRAAIRRAHSAT 559

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LHHAL T LG + +Q GS +  D LRFD  H + +T+ EL SIED +N +IA+  P+ 
Sbjct: 560 HILHHALRTTLGENATQRGSKVEGDQLRFDFAHPRSLTNEELISIEDQINQLIAEGAPIN 619

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           TR+M   +A   GA AL G KY D VRVV +     G  S   CGGTH+S+TG++ +  +
Sbjct: 620 TRVMPINEAKKLGAMALFGEKYPDFVRVVEM-----GDFSREFCGGTHLSNTGQVGICRV 674

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYR- 768
           V +  + AG+RRI  +TG +A + +   +  L+ +   +K +    + R V  + +E R 
Sbjct: 675 VKDELVAAGVRRISCVTGPKAIARMRESENLLREVGMLVKATTAEELPRKVAALQDELRV 734

Query: 769 -KLQLI-HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            K +L  +A + L      L      + D+  + H   E+  ++LK ++D ++ +  S  
Sbjct: 735 AKKELSQYASQSLAGMAAKLVNDAPMVGDIKVIVHRADELAREQLKELVDQIRAQAGSAA 794

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + LVG + + K S++   T+DL  RF+A D  + +AK++ GGGGGGR  +A++GG    K
Sbjct: 795 V-LVGQAVDGKVSLIAGATKDLAQRFSASDAVKAAAKLV-GGGGGGRAELAEAGGKIPEK 852

Query: 885 ADQAIAGVASFLK 897
            D+A+    +FLK
Sbjct: 853 LDEALQEGLAFLK 865


>gi|295672445|ref|XP_002796769.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226283749|gb|EEH39315.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 962

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 342/973 (35%), Positives = 495/973 (50%), Gaps = 111/973 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D EA  LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   S   +++    +EIWN VF+Q+ ++  +    LP   IDTGMG 
Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRSLPNKHIDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L +   ++TG      K+   ++      +RV+ DH+R+
Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396
           + +    + E L  E+  F KTLDRG  L +         G D +   DV ++LYDT G 
Sbjct: 372 IKRKATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADV-WRLYDTFGF 430

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL  ID    N   EE R RA+  S G G  T + +  ++ +  G  +
Sbjct: 431 PVDLTQLMAEERGLK-ID----NGEFEEARLRAKEASKGQGKLTKDVVKLTVHD-LGLLE 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEV 513
            +  D+ +     K  R              ++S +KAI    + V   ++   G++  +
Sbjct: 485 TMD-DVPKTDDSAKFGR------------GNITSQIKAIYHNKKFVNSSKDIPEGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQEYDTGKIIIDGKAELTVEDVQVYG-GYVLHTGFMKYGSFNVNDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYED- 685
           + IE    D I QN  V    V   + RE    +G  A+ G  Y D VRVVS  VE E+ 
Sbjct: 651 EEIERISTDYIRQNCAVYGKDVPLSIARE---ITGVRAVFGETYPDPVRVVSVGVELEEI 707

Query: 686 -GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------ 731
              VH       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A      
Sbjct: 708 LKDVHDPRWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRI 767

Query: 732 ---------RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQL 781
                    R   M    K +  A  L+V    +     E  +   +   IH K  + Q 
Sbjct: 768 AKEFGERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREQFTQIHKKVLEGQK 827

Query: 782 NVEDLSCHKIADV----------NFMSHIISEVD-SKELKSVMDAL---QKKIQSGIIML 827
             + L   K  D               H++ ++  S   K+V D+L   + K+Q   + +
Sbjct: 828 AAQKLESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYV 887

Query: 828 VGISKEKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               KE    V    V E+L  +  +  D A   A V+GG  GG  P ++   G + +K 
Sbjct: 888 FAADKEAGKIVHGCHVAENLSQQGASPNDWANSVANVVGGRAGGKAP-ISIGNGTDADKL 946

Query: 886 DQAIAGVASFLKK 898
           D+AI     +L+K
Sbjct: 947 DEAIKAATEYLEK 959


>gi|289615775|emb|CBI57516.1| unnamed protein product [Sordaria macrospora]
          Length = 961

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 339/986 (34%), Positives = 497/986 (50%), Gaps = 141/986 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQAV 61
           +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM  FK IF G     ++    +  
Sbjct: 12  VRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + LD
Sbjct: 72  VDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGLD 131

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY+T +        + D EA  LW ++ G+  D II     DNFW M + GPCGPCS
Sbjct: 132 PQRLYVTYFEGSPDLGLEPDLEAKNLWLEV-GVPEDHIIPGNMKDNFWEMGDQGPCGPCS 190

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+   + GG   +   + +    +E+WN+VF+QF++Q  +    LP   IDTGMG 
Sbjct: 191 EIHYDK---VGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGF 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ER+ + LQ+KT+NY  D+F  L    ++VTG      KY  +++      +RVI DH+R 
Sbjct: 248 ERLVSALQDKTSNYATDIFTPLFAKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRL 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            SF IADG  P N GRGYV+RR++RR   YAR     E       +LPAL  +MG  +PE
Sbjct: 308 LSFAIADGAAPNNVGRGYVVRRVLRRGARYARKYFNAEIGTFFSRILPALVEQMGEQFPE 367

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGL 396
           L++ +  I+E L  E+  F  TLDRG    +   +     GK ++   DV ++LYDT G 
Sbjct: 368 LVKKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGKKKLSGADV-WRLYDTFGF 426

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARA--------------------HSLGL 436
           P D+ + +   RGL  ID    N+A E+ R  ++A                     SL +
Sbjct: 427 PEDLTKLMAEERGLT-IDEAEVNEAREKAREASKAVKESVQEFAKLNVHQIAELETSLNI 485

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
              T++  +     K G  Q I      G +F+K   K L  K P+ L            
Sbjct: 486 PRPTSDAKFLKGDAK-GKVQLI----FNGKEFLKSS-KDLPPKTPLGL------------ 527

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFV 555
                            + D T FYAE+GGQ+ DTG  I DG+   ++ DVQ+   G  V
Sbjct: 528 -----------------LLDNTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEFG-GYIV 569

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H+  +E G L     +    D   R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  D
Sbjct: 570 HNGFIEYGELTEGDEVTCEYDELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQD 629

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674
            LRFD +H   I   ++K IED  N  I QNL   ++ ++ + A    G  A+ G  Y +
Sbjct: 630 RLRFDFSHKAAIPLEDIKKIEDLSNHYIRQNLKAYSKEVDLDLAREIEGVRAVFGETYPN 689

Query: 675 RVRVVSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            VRVVS+  E           +    S   CGGTHV +TG I  L IV ES I  GIRRI
Sbjct: 690 PVRVVSIGMEVDELLKNPKNPEWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRI 749

Query: 724 EAITGQRARSHLMGQD-----EKLKSL---------ASFLKVSQGNVVGRV------EEI 763
            A TG+ A  H   +D     +KL+ +         A+ +K +   + G        EE+
Sbjct: 750 VAYTGEGA--HQAQRDAQVFSDKLEHINALSYGPQKAAEIKAAAVELDGLTISVLTKEEL 807

Query: 764 WEEYRKLQ--LIHAKRKLQ-----LNVEDLSCHKIADVN-----FMSHIISEVDSKELKS 811
              + K+Q  ++  ++K Q       ++ ++ H   D N     F+ H+    ++K +  
Sbjct: 808 RTRFTKIQKEVVDEQKKRQKAESKTALDTVASHFSKDENKDSKVFVGHLPISANAKAISD 867

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
           V+   + K +   + +   SK+ +    + V   L  +   A       + V+GG  GG 
Sbjct: 868 VITYYKTKDKERSVYVFAGSKDDQVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGK 927

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
            P   Q  G    K ++A+     +L
Sbjct: 928 EPSR-QGAGAEPEKLEEAVKKAEEWL 952


>gi|320103497|ref|YP_004179088.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319750779|gb|ADV62539.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 874

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 323/900 (35%), Positives = 481/900 (53%), Gaps = 61/900 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R ++L+FF   G  L PS  L+P +DPT++FT +GM  FK  F G   P ++   T QK
Sbjct: 6   LRQSYLDFFVSKGCVLKPSDVLVPRDDPTVLFTPAGMNQFKREFMGLGDPTFKKAVTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R G    D+DNVGRT  H TFFEMLGNFSFG YFK  AI  AW+ LTK   +D  RL 
Sbjct: 66  CLRTG----DIDNVGRTAFHETFFEMLGNFSFGDYFKREAIHWAWEYLTKILKIDPDRLS 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQGE 181
           +TVY +D+EAF +W    GL + +I R+   DNFW     S+   G CGPCSEIFF    
Sbjct: 122 VTVYLDDDEAFAIWNNEIGLPSSRITRMDEADNFWPASAPSLGPNGVCGPCSEIFFHGN- 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                       G + +EIWNLVF QF +   ++   LP  +IDTGMGLER A  LQ   
Sbjct: 181 ------------GPKEVEIWNLVFTQFNRVGFRQLEPLPHKNIDTGMGLERAAACLQGVP 228

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +  DLF+ ++    +V    Y+ ++   V  R + DH R+ +F I + + P+NE +GY
Sbjct: 229 TVFMTDLFRPIVARVAEVLDQPYQADSPDGVRMRRMADHARALTFCIHENVRPSNEKQGY 288

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+     LG  EP +  L P +  +M   YPE++ +   I+  +R E+E F 
Sbjct: 289 VLRRLLRRAVLDGYHLGRREPFLYQLPPIVAQQMSGPYPEVVGSVPRIQAVIREEEEDFL 348

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           + L+ G+ LL+     +     ++L+G  AFKL+ THG+P+++++ +   R L  +D   
Sbjct: 349 RNLEHGMKLLEDTFRKTKAAGSDVLDGSTAFKLHATHGIPIEVVESLAAERELT-VDRPG 407

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A+EE    +R  S          +    K     T+F+GY+  R +       KV  
Sbjct: 408 FEAAVEEHARISRGTSEAAAVFEVGPLDELKKAHPQGTRFLGYETTRATG------KV-- 459

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG- 536
               I L  G + +       G+  + A+       V DQ+PFY E+GGQ+GDTG   G 
Sbjct: 460 ----IGLIQGPALVDSVAAGTGDHAQAAI-------VLDQSPFYGESGGQVGDTGRLTGP 508

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG    +TD QKK +   +H   VE G +    ++   +D + R  +   HSATHLLHHA
Sbjct: 509 DGFLFLVTDTQKKND-FLLHLGRVEHGAIVPGATVEAEVDAERREAIRRAHSATHLLHHA 567

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG H  Q GS + PD LRFD  + + +    LK+IE  VN+++  + P+   IM  
Sbjct: 568 LHKHLGEHAQQAGSKVEPDRLRFDFANPEAVGRDRLKAIEATVNNLVLGDAPITWTIMPL 627

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A   GA AL G KY + VRVV++     G +S  LCGGTH+    +I +  I+SE S+
Sbjct: 628 DQARKLGAMALFGEKYPENVRVVTM-----GDYSRELCGGTHLDHVSQIGVFAILSEESV 682

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG RRI A+TG+ A  +L  +D  L+ +A+ LKV       RV  + EE + L+    +
Sbjct: 683 AAGTRRITALTGRAALDYLKERDAVLEEIAATLKVPVAQAPARVAALLEEVKTLKKQATQ 742

Query: 777 RKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           RK    +  +        ++  V  ++ +I     +E++ + D ++KK    + +L+G  
Sbjct: 743 RKSAQTLGSIDSFLNEAVEVDGVQLVARVIDGGTVEEMRQLCDVMRKKAGERLAILLGSV 802

Query: 832 KEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E K +++   T DL+   + NA    ++ A ++ GGGGGG+P MA +GG   +K  + +
Sbjct: 803 VEGKVNLVAAFTPDLVAQRKANAGQWLKILAPIV-GGGGGGKPEMATAGGKLPDKLPEVV 861


>gi|260942927|ref|XP_002615762.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720]
 gi|238851052|gb|EEQ40516.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720]
          Length = 964

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 322/970 (33%), Positives = 510/970 (52%), Gaps = 104/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S++R+TFL++F+   H  +PSSS++P NDPTL+F N+GM  +K IF G   P  +  T
Sbjct: 19  SASTVRSTFLDYFKNKSHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPTSEFAT 78

Query: 63  -----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 79  LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 138

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD+ RLY+T ++ DE        EA + W  + G++ D I+    +DNFW M + GPC
Sbjct: 139 YKLDKDRLYVTYFEGDEKNGLEPDLEAKEYWLSV-GVAPDHILPGDAHDNFWEMGDQGPC 197

Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +S   ++    +E+WN+VF+Q+ ++       LP   IDT
Sbjct: 198 GPCSEIHYDR----IGGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKPLPSKHIDT 253

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVD 277
           GMG ER+ +VLQ+K++NYD D+F+ + +    +TG+     K+   ++      +RVI D
Sbjct: 254 GMGFERLVSVLQDKSSNYDTDVFQPIFEEIRNITGVRPYTGKFGAEDVDGIDTAYRVIAD 313

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGS 335
           H+R+ +F I+DG +P NEGRGYVLRRI+RR   Y R             L+  +     S
Sbjct: 314 HVRTLTFAISDGGVPNNEGRGYVLRRILRRGARYVRKYMNCPIGSFFQQLVDVVIENNSS 373

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393
            +PE+ + K +++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT
Sbjct: 374 IFPEIAKNKDMLKEILMEEEVSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDT 433

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+ + +    GL  ID  +F +A EE R  ++A +                 K G
Sbjct: 434 YGFPVDLTRLMAEEAGLK-IDEEAFEKAKEESREASKATNT----------------KGG 476

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVE 512
           AT  I  D+   S+    +             + + S + AI    + V+  + +GQ+  
Sbjct: 477 AT-LIKLDVHALSELDNNESITKTNDVYKYGLDNIESKIVAIYDGSKFVDTISEAGQQFG 535

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           ++ D+TPFYAE GGQ  DTG  + DG     +T+VQ     I +H   +  G L+   ++
Sbjct: 536 IILDRTPFYAEQGGQEYDTGSLVIDGSAEFAVTNVQSYGSYI-LHTGTMVEGTLKLNDNV 594

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + T D   R  +  NH+ TH+L+ AL  +LG  + Q GS + P+ LRFD +H + +T  E
Sbjct: 595 IATYDELRRWPIRNNHTGTHVLNFALKEVLGDGIDQKGSLVAPEKLRFDFSHKQALTPKE 654

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681
           L+ +E+  ++II  N  V    +    A   +G  A+ G  Y D VRVVS+         
Sbjct: 655 LEQVENISSEIIKSNKQVYAEEVELTKAKQIAGVRAVFGETYPDPVRVVSIGVAVADLLK 714

Query: 682 --EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------- 732
               +D    S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A+       
Sbjct: 715 DPTNQDWTKLSIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTGHEAQEVQRIAR 774

Query: 733 ------------SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                       S    ++++ K L   LK    +V+ + +++ E++ KL     K  L+
Sbjct: 775 EFSASLDSADKLSFGPEKEQRAKELGVALKQLSISVLDK-QKLNEKFTKLDK-SIKDHLK 832

Query: 781 LNVEDLSCHKIADVN-------------FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++ S   +  VN             F++H+    ++K +   ++ ++K+ +   + L
Sbjct: 833 AKQKEESKKTLEAVNGWLKDEEKSKTAFFVAHVPISANAKAITEAINLIKKQHKDKSLYL 892

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +  + EK A    +  E +    +A +LA+ +SA +  GG  GG+ ++ Q  G +    D
Sbjct: 893 LTGTSEKVAHGCYISDEAISKGIDASELAKAVSAHI--GGKAGGKGNVVQGMGDSPEGID 950

Query: 887 QAIAGVASFL 896
            A+  V   L
Sbjct: 951 AAVETVTKLL 960


>gi|88856253|ref|ZP_01130913.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88814572|gb|EAR24434.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 884

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 315/872 (36%), Positives = 474/872 (54%), Gaps = 72/872 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I+  +L +F + GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   T
Sbjct: 2   QTADIQNRWLTYFGERGHTIVPSASLV-SDDPTLLFTVAGMVPFVPYLTGLVPAPFDRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEFD-- 119
           + QKC+R      D++ VG+T RH TFF+M GNFSFG YFK+ AIQ AW+ LT  E D  
Sbjct: 61  SSQKCIRT----LDIEEVGKTPRHGTFFQMNGNFSFGDYFKKEAIQFAWEFLTLPESDGG 116

Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                  L++TVY++D++A   WK+ +GL  ++I R+  + N+WS  + GP GPCSEIFF
Sbjct: 117 LGFLPEDLWVTVYEDDDDAVAYWKETAGLPDERIQRLGMDTNYWSTGQPGPAGPCSEIFF 176

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           D+G    G   G + + +RY+EIWNLVFMQ+   E + K+   +  LP  +IDTGMGLER
Sbjct: 177 DRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGEGKGKEFSILGELPNQNIDTGMGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           +A + Q   N Y+ID  + ++  + +++G  Y  ++   V  RV+ DH+RSS  LIADG+
Sbjct: 236 VAFLKQGVENMYEIDQVRPVLDMAAELSGHTYGADHEADVRLRVVADHVRSSLMLIADGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRR++RR +   RLLG        L PA    M  AYPE+ +    I   
Sbjct: 296 TPSNEGRGYVLRRLLRRTVRAMRLLGVEGTTFAELFPASRDAMKDAYPEVEKDYDRISRV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           + +E++ F +TL  G  +LD  + H    G  E L  D AF L+DT G P+D+  ++   
Sbjct: 356 VLAEEDTFLRTLASGTTILDTAVVHTKESGASE-LPSDTAFLLHDTFGFPIDLTLEMAAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL+ +D  +F+  ++EQR RA+A +      +++K + +    YGA +  G     G +
Sbjct: 415 AGLS-VDREAFDTLMKEQRDRAKADA------SSKKQYLADLSVYGAFRAHGETTFTGYE 467

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
            ++ D  V+                  I+  G  V  A SGQ  E++  +T  YAE+GGQ
Sbjct: 468 TLETDSSVI-----------------GIIVDGVSVSRAASGQIAEIILAETSLYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  +G    L++ DVQ+  +G+  H   +  G +         +D   RR  +  H
Sbjct: 511 EADAGAIVGASFHLEVLDVQRPVKGLISHKVRITAGEVGVGDPATALVDADWRRGATQAH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQN 646
           SATH++H AL  ILG    Q+GS      +R D + S+ + SAE KS IE+  N  +  N
Sbjct: 571 SATHVIHAALRQILGKDAHQSGSYNKAGYMRLDFSWSQAL-SAETKSEIEEVANTAVRDN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V TRIM  +DA   GA AL G KY D VRVV +    GG  S  LC GTHVS + EI 
Sbjct: 630 LEVSTRIMALDDAKDLGAMALFGEKYGDTVRVVEI----GGPWSLELCAGTHVSRSAEIG 685

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V ESS+ +  RR+E++ G  A  +   +   +  L S LK  +  +  R+ E+   
Sbjct: 686 LISLVGESSVGSSNRRVESLVGMNAFRNFAAERAIVSELTSSLKTPREQLPDRIAEL--- 742

Query: 767 YRKLQLIHAKRKL-QLNVEDL---------SCHKIADVNFMSHIISEVDSK-ELKSVMDA 815
                L  A+RK+ QL    L         S   +  VN +   + E+ S  +L+ ++ +
Sbjct: 743 --MANLKSAERKIAQLEAGQLSQRVPALIESARALGSVNAVIENVGELPSTDDLRGLVQS 800

Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTED 845
           +++++  ++ ++ L     +K A  +IV T D
Sbjct: 801 VRERMGAEASVVALAATIGDKPA--VIVATND 830


>gi|225351924|ref|ZP_03742947.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157171|gb|EEG70510.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 892

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 336/931 (36%), Positives = 507/931 (54%), Gaps = 88/931 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++F+K+GH ++PS+SLI  N PT +FT +GMVPF     G++ P    + +
Sbjct: 3   TSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +G    + GG P + E   RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 177 RGPEYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTDPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    E++ F +TL+ G  + D  ++     G D + +G+ AFKL+DT+G P++I  ++ 
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAV-SGEDAFKLHDTYGFPIEITLEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G+  +D   F + + EQ+SRARA +L              K+++     +  D    
Sbjct: 413 ADQGVK-VDEAKFRELMAEQKSRARADAL--------------KKRHNVDLSVYDDF--- 454

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQK-VEVVFDQTPF 520
                  +K L Q  PID         +A    I+Q+G+    AV+G   +EV+ D+TPF
Sbjct: 455 -------KKTLVQ--PIDFLGYTDMSARAKVLGIMQEGKGSVPAVTGPATIEVILDRTPF 505

Query: 521 YAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YA+AGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   
Sbjct: 506 YAQAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDR 565

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  ++  H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + S+E  V
Sbjct: 566 RGAIARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARV 625

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ + +NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTH+
Sbjct: 626 NEKLRENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHI 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
              G+I  + I+SE+SI +G+RR++A+ G+ A      +   +  L+  +      +  R
Sbjct: 683 DHVGKIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADR 742

Query: 760 VEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--M 813
           V  +     E  R+L  ++ + +L  +V  L     A     S    +V +K ++     
Sbjct: 743 VNALLARLKESDRRLATMY-ESQLAASVPALVSETKA-----SQAPVKVAAKNVEHFGSF 796

Query: 814 DALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV 862
           DAL+K +     Q G     ++ L G+++E K  V +   E    +   A DL R ++K+
Sbjct: 797 DALRKTVLDVRGQLGEEFPVVVALAGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKI 856

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           L GGGGGG+P  AQ GG +  K ++A+  +A
Sbjct: 857 L-GGGGGGKPDFAQGGGADATKINEALEALA 886


>gi|187735876|ref|YP_001877988.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|205829974|sp|B2UKT4|SYA_AKKM8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187425928|gb|ACD05207.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 942

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 307/796 (38%), Positives = 428/796 (53%), Gaps = 111/796 (13%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF++  H ++PS+SL+P   P L+FTN+GM  F   F G   P +  
Sbjct: 1   MMTATEIRQSFLDFFREKQHTVVPSASLMP-QSPGLLFTNAGMNQFVPYFLGVWTPPWTP 59

Query: 61  V--TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDL++VG  + HHTFFEMLGN+SFG YFK  AI+ AW+L+ + +
Sbjct: 60  ARATDTQKCIRAGGKHNDLEDVGYDSYHHTFFEMLGNWSFGDYFKREAIRWAWELVVERW 119

Query: 119 DLDQRRLYITVYDEDE----------EAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164
                RLY TVY  D+          EA+  W ++    GL  D  I+     DNFW M 
Sbjct: 120 GFPAERLYATVYAPDKSKGDPGEFDREAWDFWAELFRSRGLDPDVHIVHGNVKDNFWMMG 179

Query: 165 ETGPCGPCSEIFFDQGECIP-GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+  D     P G   GS  +++ ++ IEIWNLVF+Q+  ++      LP 
Sbjct: 180 ETGPCGPCSELHVD---LTPEGNTKGSLVNKDSDQCIEIWNLVFIQYNAESDGSMRNLPA 236

Query: 222 MSIDTGMGLERMATVLQ---------EKTNNYDIDLFKHLIQASEQVTGMKYEG------ 266
             +DTGMG ER  +++Q          K +NY  D+F+ L    E ++G KY        
Sbjct: 237 CHVDTGMGFERACSIMQCTNGFKDFSRKPSNYATDVFRPLFDRLEVLSGRKYADVYPAPG 296

Query: 267 -----------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                         +  RVI DHLR+ SF IADGILP N GR YVLRRI+RRA+ Y R L
Sbjct: 297 SKRVDAEDGTLQEAIAFRVIADHLRTLSFSIADGILPGNNGRNYVLRRILRRAVRYGRRL 356

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+T+P +  L+  L    G  +PEL      ++E L  E+  F +TLDRGL L D   + 
Sbjct: 357 GFTQPFLAELVDTLVESFGQVFPELAARATTVKEVLNREEASFNETLDRGLELFDAETAS 416

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
            GK   ++G+ AFKLYDT+G P+D+   +   RGL  ID+  FN+ +EEQR RARA    
Sbjct: 417 AGK---VSGEFAFKLYDTYGFPIDLTALLAEERGL-DIDMERFNRLMEEQRERARA---- 468

Query: 436 LGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                  ++  +L  K  A T+F GYD+                       +  ++ V  
Sbjct: 469 ---ARKSEVVRALDLKTDAVTEFTGYDV-----------------------DECAATVLE 502

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           + +QG+          + ++ D+TPFYAE GGQ+ D G     G    +  VQ+   G  
Sbjct: 503 VSRQGD---------SLFIITDKTPFYAEMGGQVSDAGLIEIGGESYHVMAVQQI--GNA 551

Query: 555 VHHAIVERGILRTEMS--LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             H +  R  L  +    + L+ID + RR++  +H+ATHLLH AL  ++    +Q GS +
Sbjct: 552 RAHVVEARPGLEVKPGDRVHLSIDAERRRRIEAHHTATHLLHCALHQVVSPDAAQQGSFV 611

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL---LG 669
           + D LRFD  +S  ++  +L+ IE+ VN  I ++LPV      R  A   G AA+    G
Sbjct: 612 SEDRLRFDF-NSSAVSPDQLRLIEEKVNGWIEESLPV--HCTERAYADVKGNAAIAQFFG 668

Query: 670 TKYNDRVRVVSV-EYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            KY D VRVV V    DG  GV S   CGGTH+++T  I L  I SE +I +G+RRIEA+
Sbjct: 669 DKYGDVVRVVQVGGCRDGLDGV-SMEFCGGTHIANTKNIGLFKIKSEGAIASGVRRIEAM 727

Query: 727 TGQRA----RSHLMGQ 738
           TG  A    R H++ +
Sbjct: 728 TGDAALEMIRQHVVAK 743


>gi|306822871|ref|ZP_07456247.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|309801116|ref|ZP_07695245.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|304553503|gb|EFM41414.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|308222005|gb|EFO78288.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 892

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 342/927 (36%), Positives = 507/927 (54%), Gaps = 88/927 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++FQK+ H ++PS+SLI  N PT +FT +GMVPF     G++ P    + +
Sbjct: 3   TSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +G    + GG P + E   RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 177 RGPQYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+++++G  Y  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TL+ G  + D  ++   +    +++GD AFKL+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  +D   F + + EQ+SRARA +L              K+++     +  D     
Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADAL--------------KKRHNVDLSVYDDF---- 454

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQ-KVEVVFDQTPFY 521
                 +K L Q  PID         +A    I+Q+G+    AV+G   +EV+ D+TPFY
Sbjct: 455 ------KKTLVQ--PIDFLGYTDMSARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFY 506

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R
Sbjct: 507 AEAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRR 566

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E  VN
Sbjct: 567 GAIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVN 626

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           D I  NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTH+ 
Sbjct: 627 DRIRDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHID 683

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
             G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV
Sbjct: 684 HVGKIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERV 743

Query: 761 E----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MD 814
                ++ E  R+L  ++ + +L  +V  L    +AD    S    +V SK +      D
Sbjct: 744 NTLLAKLKESDRRLAAMY-EGQLAASVPAL----VADAK-ASQAPVKVASKNVGHFGSFD 797

Query: 815 ALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862
           AL+K +     Q G     ++ L G++++ K  V  V T D   +    A DL R ++K+
Sbjct: 798 ALRKTVLDVRGQLGEDMPVVVALAGVNEDGKPMV-AVATNDAARKQGIKAGDLVRGASKI 856

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAI 889
           L GGGGGG+P  AQ GG +  K D A+
Sbjct: 857 L-GGGGGGKPDFAQGGGSDATKIDAAL 882


>gi|302834443|ref|XP_002948784.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f.
           nagariensis]
 gi|300265975|gb|EFJ50164.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f.
           nagariensis]
          Length = 980

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 336/931 (36%), Positives = 497/931 (53%), Gaps = 90/931 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF+  GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ        TT 
Sbjct: 84  AEIREAFLSFFESKGHTRLPSSSLVP-EDPTVLLTIAGMLQFKPVFLGQAPRKVPTATTT 142

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR     ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T  F L   R
Sbjct: 143 QKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIRWAWELSTGVFGLPPER 198

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           ++++V++ED EA  +W+ + G+  ++I R+   DNFWS   TGPCGPCSE+++D      
Sbjct: 199 VWVSVFEEDGEAEAIWRDVVGVPPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHP--E 256

Query: 185 GGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G  G+S E+  R+IE +NLVFMQ  ++       L   +IDTGMGLERMA +LQ   NN
Sbjct: 257 RGTEGASLEDDTRFIEFYNLVFMQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVPNN 316

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYV 300
           Y+ DL   ++Q + ++  + Y   +       +VI DH R+ +++++DG+ P+N GRGYV
Sbjct: 317 YETDLIFPIVQKAAEIAAVDYHSASPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRGYV 376

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR +   RLLG  E     +        G   P + +    I + L  E+  F  
Sbjct: 377 LRRLLRRVVMKGRLLGIREVFTPAVAAVAVGLSGPCDPAVQKNAQRIYDELAREEGLFVA 436

Query: 361 TLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           TL+RG   LD +LS         ++ G  AF LYDT G PL++ Q++  ARG+  +D+  
Sbjct: 437 TLERGQKQLDELLSAATASTGSRVIGGADAFMLYDTFGFPLELTQELAEARGVE-VDVAG 495

Query: 418 FNQALEEQRSRAR-----------AHSLGLGSGTTEKIWF---------SLKEKYGATQF 457
           F+  +E QR R++           A    L + T  + W          + + + G T F
Sbjct: 496 FDGEMEAQRQRSKESRETVDLTAQAGLAQLAAQTHSRSWLPPGVRIPIRTQRMRVGPTSF 555

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY   RG           C +            V  ++++G+ VE   +G + EV+ D 
Sbjct: 556 TGYSATRG-----------CGR------------VVGLMREGKPVERVHAGDRCEVLLDV 592

Query: 518 TPFYAEAGGQLGDTGCAI--------GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTE 568
           TPFYAE+GGQ+GD G  +             + + D QK A G +FVH   V  G L   
Sbjct: 593 TPFYAESGGQVGDMGRLVLPAAAGEAEVAAEVAVRDCQKAAGGSVFVHSCEVVAGELGVG 652

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   +D   RR++  +H+ATHLL  AL  +LG    Q GS +    LRFD   ++ ++
Sbjct: 653 DAVNALVDDDLRRRVRAHHTATHLLQSALKIVLGPDTCQQGSLVNFQRLRFDFNLARAMS 712

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            +EL  +E  VN  +AQ  P+ TR+M  ++A A+GA A+ G KY+D VRVV V     G+
Sbjct: 713 PSELTEVERLVNCWVAQAAPLETRVMGLQEAKAAGATAMFGEKYDDVVRVVDVP----GI 768

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHV +T EI    I+SES I +GIRR+EA+ G  A  +L   D  ++ LA  
Sbjct: 769 -SMELCGGTHVGNTAEIGAFKILSESGIASGIRRVEAVAGTAAVEYLHTVDGLVRGLAGQ 827

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVD 805
           LKV    V  RV  +  E R  + + ++ K QL V   + L    +     +  +++E+ 
Sbjct: 828 LKVKLEEVPSRVAALQSELRSTEKLLSELKAQLAVAQSQSLVGEAVTAPGGLKVLVAELP 887

Query: 806 SK-ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
            + E K++  AL     + +++        K + +  ++        AV     + KV+G
Sbjct: 888 GEVEAKAMQGALGDP--AAVLLASRAVDGSKVNFVAALSP------GAVKGGLQAGKVVG 939

Query: 865 G------GGGGGRPHMAQSGGPNGNKADQAI 889
                  GGGGG+P +AQ+GG + +K ++A+
Sbjct: 940 AVAKVCGGGGGGKPALAQAGGRDASKTEEAL 970


>gi|261337332|ref|ZP_05965216.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277705|gb|EFA23559.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 897

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 339/930 (36%), Positives = 506/930 (54%), Gaps = 79/930 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   +L +F++ GH ++PS+SLI  N PT +FT +GMVPF     G++ P    + +
Sbjct: 3   TAEIAKRYLNYFEQQGHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSHRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A+DLLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTMPQDQGGL 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D+ +L++T + +D+EA  LW+   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDKDKLWMTTFTDDDEARALWRN-EGVDPEHIQILGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMS---IDTGMGL 230
           +G    + GG P + E   RYIEIW+LVF  F   N   K +  I+ +++   IDTG GL
Sbjct: 177 RGPEYGVEGG-PIADEN--RYIEIWDLVFENFMVDNVKSKTDLHIVGELAHKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A E++TG+KY  + +  V  RV+ DH+RS+  +++D
Sbjct: 234 ERVAYLLQGKQNIYETDEVYPVIEACEKITGIKYGDDKDADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LGY +P+M  LLP     M   YPEL      + 
Sbjct: 294 GVRPSNAGRGYVLRRLIRRTVEAMRVLGYQDPVMPQLLPVSEAAMEPNYPELAATFKDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--------ILNGDVAFKLYDTHGLPLDI 400
           E    E++ F +TL  G+ + D  +    KDE        ++ GD AF+L+DT+G P+++
Sbjct: 354 EAAYGEEDAFRRTLTNGIEIFDMAVKK-AKDEDTDSTEPAVITGDTAFQLHDTYGFPIEL 412

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++   +G+  +D   F + + EQ+SRAR                +LK+++        
Sbjct: 413 TLEMAAEQGVK-VDEAKFRELMAEQKSRARQD--------------ALKKRHNV------ 451

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTP 519
           DL     F K     +  +   +++    S V  I+++GE    AV+    VEV+ D TP
Sbjct: 452 DLSEYDDFKKTLESPIVFEGYTEVST--RSRVIGIMKEGEGSVPAVTAPATVEVILDHTP 509

Query: 520 FYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAEAGGQL D G  I  DG  L++ DVQK  + + VH   +  G L     +  +ID +
Sbjct: 510 FYAEAGGQLADEGTIIADDGAVLEVDDVQKPIKDLIVHQCRLVEGTLVVGADVTASIDIE 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  ++  H+ATH++H AL   LG H +Q GS   P+ LRFD   S   +   + S+E  
Sbjct: 570 RRGAIARAHTATHIVHKALREELGPHATQRGSEDAPNRLRFDFQWSSAPSKDLMNSVEAR 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ +  NL V T+ M  +DAIA GA  L G KY D VRVV++  +DG   S  LCGGTH
Sbjct: 630 VNERLRDNLRVSTQEMKFDDAIALGAMHLFGEKYGDIVRVVTIG-DDG--WSRELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V   G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  
Sbjct: 687 VDYAGKIGQINIMSEASIGSGVRRVDALVGQSAYDFSAREHALVSQLSDTLNARPDELAD 746

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSK 807
           R+     ++ E  R+L  ++ + +L L V DL           +  V  + H  S  DS 
Sbjct: 747 RINTLLGKLKESDRRLSAMY-ESQLSLMVPDLVQQTKQANDTVLVAVKNVGHFGS-FDSL 804

Query: 808 ELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLG 864
             K+VMD   +    +  ++ L G++ + K  + +   E   ++   A  L   +AK L 
Sbjct: 805 R-KTVMDVRNRLGADKPVVVALAGLTDDDKPMIAVATNEAAREQGIKAGALVSAAAKTL- 862

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           GGGGGG+P  AQ GG +  K D A+A + +
Sbjct: 863 GGGGGGKPDFAQGGGSDAPKIDDALANLKA 892


>gi|300781084|ref|ZP_07090938.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532791|gb|EFK53852.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 893

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 318/873 (36%), Positives = 475/873 (54%), Gaps = 65/873 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64
           IR  F + F   GH  +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P + +   T++
Sbjct: 6   IRDRFTQHFVDAGHIPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFDSGTATSI 64

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+LAW LLT       F 
Sbjct: 65  QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIELAWSLLTNSQADGGFG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RL++TVY ED+EA ++W+   G+ A++I R+   DNFWSM   GPCGP SEI++D+
Sbjct: 121 LDPERLWVTVYTEDDEAAEIWENKIGVPAERIQRMGMEDNFWSMGVPGPCGPSSEIYYDR 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF--EQQNKQERF----ILPKMSIDTGMGLERM 233
           G    G   G   +  RY+EIWNLVFM+    + +K+  F     LP  +IDTG+G+ER+
Sbjct: 181 GPE-HGKEGGPIADDNRYMEIWNLVFMESIRGEGDKKGGFEILGELPNKNIDTGLGIERL 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGN-NIVNHRVIVDHLRSSSFLIA 287
           A +LQ   N Y+ DL   +I+A+E++TG  Y     EG  + V  RVI DH R++  +I 
Sbjct: 240 ACILQGVDNVYETDLLHPVIEATEKLTGTTYGAGGKEGELSDVRFRVIADHSRTAMMIIL 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGY+LRR++RR +  ARLLG     +   +  +   M  ++PE+ Q +  I
Sbjct: 300 DGVTPSNEGRGYILRRLLRRIVRSARLLGAQGTTIETFMNTIMDTMAPSFPEIEQNRERI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E++ F KTL+ G    D   + +      +L G  AF+L+DT+G P+D+  ++ 
Sbjct: 360 LRVAVNEEKAFLKTLESGTHRFDEAAATVKGSGQTVLPGGQAFELHDTYGFPIDLTLEMA 419

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D+ +F+ A++EQR RA+A S    +G  ++  +        T+F+G+D L  
Sbjct: 420 AEAGLE-VDMAAFDAAMKEQRDRAKADSKAKKTGNIDESLYREWVDAHPTEFVGFDTL-- 476

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                 D KV+                  +V+ GE V E   G +VEV+ D TP YAE G
Sbjct: 477 ----DHDSKVI-----------------GLVRGGEKVGEVGQGDEVEVILDITPMYAEGG 515

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQL D G   +GD + L + DVQK   + ++VH A VE G L    ++   ++   R   
Sbjct: 516 GQLADRGRIVVGDTV-LSVHDVQKVGNKKLWVHKATVENGGLDLGQTVRTEVNPTWRHGA 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +TSA+L  I    N  +
Sbjct: 575 RQAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTSAQLDEIAVIANQAV 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +  V T   + E A   GA AL G  Y D VRVV +    GG  S  LCGGTHV  + 
Sbjct: 635 DADFAVNTFETSLERAKEMGAMALFGENYGDEVRVVEI----GGPFSIELCGGTHVEHSS 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + ++ ESS+ +G RRIEA +G  + +    +      LA  LK     +  R+ ++
Sbjct: 691 QIGPVAVLGESSVGSGARRIEAYSGMDSFAFFSKEAALASGLAEELKTPTDQLPERIAQL 750

Query: 764 WEEYRKLQL-IHAKRKLQLNVED----LSCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817
            E  R  +  I   RK +L  +          I D+ F++  + + +   +++++   L+
Sbjct: 751 TERLRAAEKEIENLRKKELANQTGELVKQAETIGDIKFLAVKLPDGLTGGDMRTMATDLR 810

Query: 818 KKIQSG-IIMLVGISKEKKASVLIVVTEDLLDR 849
            ++ S   ++++  S + K    +  T   +D+
Sbjct: 811 GRLGSDPAVIVLASSTDGKVPFAVAATPGAVDK 843


>gi|171743066|ref|ZP_02918873.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC
           27678]
 gi|283455924|ref|YP_003360488.1| alanyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|171278680|gb|EDT46341.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC
           27678]
 gi|283102558|gb|ADB09664.1| Alanyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 892

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 341/927 (36%), Positives = 507/927 (54%), Gaps = 88/927 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++FQK+ H ++PS+SLI  N PT +FT +GMVPF     G++ P    + +
Sbjct: 3   TSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +G    + GG P + E   RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 177 RGPQYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+++++G  Y  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TL+ G  + D  ++   +    +++GD AFKL+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  +D + F + + EQ+ RARA +L              K+++     +  D     
Sbjct: 414 EQGVK-VDEVKFRELMAEQKGRARADAL--------------KKRHNVDLSVYDDF---- 454

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQ-KVEVVFDQTPFY 521
                 +K L Q  PID         +A    I+Q+G+    AV+G   +EV+ D+TPFY
Sbjct: 455 ------KKTLVQ--PIDFLGYTDMSARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFY 506

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R
Sbjct: 507 AEAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRR 566

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E  VN
Sbjct: 567 GAIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVN 626

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           D I  NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTH+ 
Sbjct: 627 DRIRDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHID 683

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
             G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV
Sbjct: 684 HVGKIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERV 743

Query: 761 E----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MD 814
                ++ E  R+L  ++ + +L  +V  L    +AD    S    +V SK +      D
Sbjct: 744 NTLLAKLKESDRRLAAMY-EGQLAASVPAL----VADAK-ASQAPVKVASKNVGHFGSFD 797

Query: 815 ALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862
           AL+K +     Q G     ++ L G++++ K  V  V T D   +    A DL R ++K+
Sbjct: 798 ALRKTVLDVRGQLGEDMPVVVALAGVNEDGKPMV-AVATNDAARKQGIKAGDLVRGASKI 856

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAI 889
           L GGGGGG+P  AQ GG +  K D A+
Sbjct: 857 L-GGGGGGKPDFAQGGGSDATKIDAAL 882


>gi|110004987|emb|CAK99318.1| probable alanyl-trna synthetase protein [Spiroplasma citri]
          Length = 918

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 302/940 (32%), Positives = 496/940 (52%), Gaps = 104/940 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR  +L+FF+   H  LPS SLIP +DP+L++ NSG+   K  F G++ P    +T  
Sbjct: 7   NAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TKEFDLDQ 122
           QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+ L   K    D 
Sbjct: 67  QKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T+Y +D+EA+++W+ + GLS ++II+   + NFW +   GPCGP +EIF+D+GE 
Sbjct: 123 AKLYVTIYKDDQEAYEIWRNVIGLSDERIIKGDKDTNFWEIG-AGPCGPNTEIFYDRGEK 181

Query: 183 -----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                I   L     E +RY+E+WN+VF Q+          LP+ +IDTG GLER+A+++
Sbjct: 182 YDPEQIGLKLLQDDLENDRYLEVWNIVFSQYNNNGNGTYTDLPRKNIDTGAGLERIASII 241

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-------GNNI------VNHRVIVDHLRSSSF 284
           QE   N++ DLF  +I+A E++   KY         NN          +VI DH+R+ +F
Sbjct: 242 QETPTNFETDLFMPIIKAVEKLVNGKYHYDETALFSNNSEQLKINTAFKVIADHIRAVTF 301

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG  P N+ RGYV+RR++RRA  Y + +  TEP +  L+  +   M   Y  L++ +
Sbjct: 302 AIVDGAFPGNKDRGYVIRRLIRRASLYGKKIDLTEPFLFKLVGTVVKIMQEYYSYLVEKQ 361

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            ++E+ +  E+++F KTL++G  L + V +  G    ++ + AF+L++++G P++++++ 
Sbjct: 362 PIVEQAVLDEEKKFLKTLEQGSKLFNEVKTKYG---TISKEHAFRLFESYGFPIELIEEE 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G+  +D   F++ LE  ++ +R +   + +   +   F+  +   A+QF+GY+  +
Sbjct: 419 AHEVGI-NVDRAGFDELLENAKTISRTNRKDIKAIHLQSELFTKLDV--ASQFVGYEYEQ 475

Query: 465 GSK----FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
            +     FM  D      KP   LTN    I                      +  +TPF
Sbjct: 476 VNNTEIVFMFAD-----DKPVTKLTNTTGYI----------------------ILKETPF 508

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ  D G  + D     + DVQ+      +H   VE G L     +  +ID   R
Sbjct: 509 YAEKGGQAADHGLILKDNTTAYVLDVQQGPNKQHLHFVKVE-GTLAIGDLVNASIDSDRR 567

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NHS THL+H AL  +LG+HV Q GS    + LR D+TH++ IT AE+ ++E +V 
Sbjct: 568 FYTRKNHSGTHLIHAALREVLGNHVMQTGSYNDAERLRIDITHNQAITPAEITAVEGSVA 627

Query: 641 DIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I   +P      + + A+    A A    KY+  VR+V       G +S  LCGGTHV
Sbjct: 628 KAIKTAIPCEIIYTDMQTALDVHHALAFFTEKYDAEVRIVKF-----GTYSCELCGGTHV 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---EKLKSLASFLKVSQGNV 756
           +++ ++  L +    S  AG  RI AIT  +  +  + +    EK +++  F K +QG  
Sbjct: 683 ANSQDVEDLLVTGLESKGAGTFRIHAITSNKTIASYLNEQFLKEKTEAINYFDKYNQGKA 742

Query: 757 V---GRVEEIWEE----------YRKLQLIHAK-----RKLQLNVEDLSCHKIAD----- 793
                 +++ WE+          +++L+ + A+     ++ Q   +++   +        
Sbjct: 743 ALLDQSLDQTWEQISNLTVSKPNWKQLKELVAQFKEDFKRWQKQYDNILIQQFVKQYNTF 802

Query: 794 -------VNFMSH-IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                  +NF++H   ++VD   LK ++D  + + ++ +I LV +S E +A++++ V++D
Sbjct: 803 LPQDKNGINFLTHQFTTKVDINALKVLIDDYKARYRNLLIFLVDVSDETQATLIVGVSDD 862

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L DR+ A  + +    +L G GGG    +AQSG  N +K 
Sbjct: 863 LHDRYQAGKIIQQLNPLLNGKGGGNNS-VAQSGFNNKDKT 901


>gi|212716059|ref|ZP_03324187.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661426|gb|EEB22001.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM
           16992]
          Length = 892

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 336/927 (36%), Positives = 505/927 (54%), Gaps = 88/927 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++F+K+GH ++PS+SLI  N PT +FT +GMVPF     G++ P    + +
Sbjct: 3   TSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +G    + GG P + E   RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 177 RGPEYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T P+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTGPVMPTLLPTSKAAMEPSYPELNNTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    E++ F +TL+ G  + D  ++     G D + +G+ AFKL+DT+G P++I  ++ 
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAV-SGEDAFKLHDTYGFPIEITLEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G+  +D   F + + EQ+SRARA +L              K+++     +  D    
Sbjct: 413 ADQGVK-VDEAKFRELMAEQKSRARADAL--------------KKRHNVDLSVYDDF--- 454

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQ-KVEVVFDQTPF 520
                  +K L Q  PID         +A    I+Q+G+    AV+G   +EV+ D+TPF
Sbjct: 455 -------KKTLVQ--PIDFLGYTDMSARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPF 505

Query: 521 YAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YA+AGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   
Sbjct: 506 YAQAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDR 565

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  ++  H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + S+E  V
Sbjct: 566 RGAIARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARV 625

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ + +NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTH+
Sbjct: 626 NEKLRENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHI 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
              G+I  + I+SE+SI +G+RR++A+ G+ A      +   +  L+  +      +  R
Sbjct: 683 DHVGKIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADR 742

Query: 760 VE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--M 813
           V     ++ E  R+L  ++ + +L  +V  L     A     S    +V +K ++     
Sbjct: 743 VNALLAKLKESDRRLAAMY-ESQLSASVPVLVAETKA-----SQAPVKVAAKNVEHFGSF 796

Query: 814 DALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV 862
           DAL+K +     Q G     ++ L G+++E K  V +   E    +   A DL R ++K+
Sbjct: 797 DALRKTVLDVRGQLGEENPVVVALSGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKI 856

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAI 889
           L GGGGGG+P  AQ GG +  K D+A+
Sbjct: 857 L-GGGGGGKPDFAQGGGVDATKIDEAL 882


>gi|261749137|ref|YP_003256822.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497229|gb|ACX83679.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 887

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 318/930 (34%), Positives = 489/930 (52%), Gaps = 92/930 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FFQ   H+++PS  +   +DPTL F N+GM PFK  F G +KP Y  +  VQK
Sbjct: 6   IRDTFLDFFQNKKHKIIPSFPIYLKDDPTLFFINAGMNPFKEYFLGHKKPEYTRIVNVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+NVG  N HHT FEMLGN+SFG Y ++  I+ AW+LLTK +++ ++ LY
Sbjct: 66  CLRVSGKHNDLENVGHDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLTKVYNIPEKNLY 125

Query: 127 ITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           I+++  DE      D+E F+ WK  + ++ + ++     +NFW M   GPCGPCSEI  D
Sbjct: 126 ISIFIGDEKEGLSMDKETFQHWK--TFINKENLVFFGKEENFWEMGSIGPCGPCSEIHID 183

Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS---IDTGMGL 230
                + E IPG     +++  + IEIWNLVF++F +++     IL K+S   +DTGMGL
Sbjct: 184 LRNKEEKEKIPGKYL-INKKNPKVIEIWNLVFIEFYRRSDG---ILEKLSTKHVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+  VLQ K ++YD D+F  +I+  ++  G   K E N  ++ R++ DHLR+  F I D
Sbjct: 240 ERLCMVLQGKFSSYDTDIFFPIIRDIKESLGGIYKEEFNQDISIRIVADHLRALVFSIFD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G LP+N G GYV+RR++RRA+ Y  R L   EP +   + +L   M +++PEL + K  I
Sbjct: 300 GQLPSNNGAGYVIRRLLRRAVIYVTRFLYQKEPFIYKFVDSLVRRMKNSFPELEKKKDYI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           +  ++ E+  F + L++G   +  ++  +     ++L+G   F+LYDT+G PL  +  I 
Sbjct: 360 QNVIKEEESSFFQVLEKGYERIQHIILKAKERNQKVLDGKSLFQLYDTYGFPLK-LSKIF 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI----WFSLKEKYGATQFIGYD 461
                  ID  SF + L +Q+ ++      +      KI    +FS K       FIGYD
Sbjct: 419 AEENNLYIDEKSFEKRLLKQKEKSHKKKNIIIKNDWIKIHSNQFFSEK-----NNFIGYD 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L             C                 I+Q  +I ++       E+VF +TPFY
Sbjct: 474 FLE------------CH--------------ILIIQYRKIEDKIKENHYYELVFSKTPFY 507

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E GGQLGDTG    D  ++ I    KK   I +H  IV +  +         ++   R+
Sbjct: 508 PEGGGQLGDTGFIKNDLEKIFIEKT-KKENSIIIH--IVRKLPVNIYSRFQAIVNKNRRK 564

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH++THLLH +L  ILG H+ Q GS +  D LRFD +H K IT  EL  IE+ V  
Sbjct: 565 KIEKNHTSTHLLHFSLKKILGEHIQQKGSYVGEDYLRFDFSHPKKITIEELFQIEEMVQK 624

Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           +I  NLP+   R +  ++AI  G   +   KY   VR   + + D    SS LC GTH  
Sbjct: 625 LIFSNLPLEERRSIPLQEAIKKGYNGIFYEKYEKEVR--GITFGD----SSELCIGTHAK 678

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK--------SLASFL 749
           +TG I +  IVSE S+  GIRRI+A T ++A  +L     Q++ L+        ++ S  
Sbjct: 679 NTGCIQVFSIVSELSVSYGIRRIKAFTSEKAIQYLKSIHFQEKSLRKILNNTESTIKSIF 738

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
            + + N   + +    ++++++ I  K  L   ++  S   I D++F      + D    
Sbjct: 739 SLQEQNKKLKKKLEKLQFQQIK-IFKKEYLLKAIQLPSITYICDISFEE---KDFDLNLF 794

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AVDLARLSAKVLGGGG 867
           K ++  L+  I S + M+VG  K+KK  + I +++ ++   N  A  + R  +  +  G 
Sbjct: 795 KKIILDLRNVI-SNLFMVVGFIKDKKPIIFISISDHIIKNKNIHANQIIRKMSDYI-HGK 852

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G+   A + G N N     +     +LK
Sbjct: 853 SWGKSFFATAIGSNQNGLSLVLKTTKEYLK 882


>gi|294654445|ref|XP_456501.2| DEHA2A03652p [Debaryomyces hansenii CBS767]
 gi|199428887|emb|CAG84453.2| DEHA2A03652p [Debaryomyces hansenii]
          Length = 1021

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 326/929 (35%), Positives = 491/929 (52%), Gaps = 107/929 (11%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
           S +R+TFL++F+ K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P     T 
Sbjct: 80  SRVRSTFLDYFKVKQNHTFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFSTL 139

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ +
Sbjct: 140 KRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAISWSWELLTEVY 199

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L+Q RLY+T +  DE        EA   W  + G++ D I+     DNFW M + GPCG
Sbjct: 200 KLEQDRLYVTYFGGDEKQGLQPDLEAKNFWLAV-GVAEDHILPGNLEDNFWEMGDQGPCG 258

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   SS    +    +E+WN+VFMQ+ ++       LP   IDTG
Sbjct: 259 PCSEIHYDR----IGGRNASSLVNMDDPNVLEVWNIVFMQYNREPDSSLRSLPAKHIDTG 314

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           +G ER+ ++LQ K++NYD D+F+ +     ++TG++ Y G       + I   +RVI DH
Sbjct: 315 LGFERLVSILQNKSSNYDTDVFQPIFNKIREITGVRPYTGKFGSEDRDGIDTAYRVIADH 374

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F I DG +P NEGRGYVLRRI+RR   Y R  + Y        L+P +  +    
Sbjct: 375 VRTLTFAITDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVPVVVEQNSEI 434

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTH 394
           +PE+++ +  + E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+
Sbjct: 435 FPEILKNQQDLTEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTY 494

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +    GL  ID   F +A EE R  ++A +   G    +    +L E  G 
Sbjct: 495 GFPVDLTRLMAEEAGLK-IDEEGFEKAKEESREASKATNNKAGVSLIKLDVHALSELDGN 553

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
            +    D     K+  E+ K       + + NG SS V +I +         +G +  ++
Sbjct: 554 DKVPKTD--DSFKYDIENIKANV----VAIYNG-SSFVDSISE---------AGSQAGIL 597

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+TPFYAE+GGQ  DTG  + DG+    +++VQ    G  +H   +  G L+ E  ++ 
Sbjct: 598 LDKTPFYAESGGQEYDTGKLVIDGVAEFSVSNVQVYG-GYVLHTGSLLEGSLKLEDEIIA 656

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           T D   R  +  NH+ TH+L+ AL  +LG +V Q GS + P+ LRFD +H + +T  EL 
Sbjct: 657 TYDELRRWPIRNNHTGTHVLNFALREVLGDNVDQKGSLVAPEKLRFDFSHKQGLTPDELL 716

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------EY 683
            +E   ND I +N  V  + +   DA    G  A+ G  Y D VRVVS+         + 
Sbjct: 717 KVETISNDYIKENKQVYAKDIRLNDAKEIDGLRAVFGETYPDPVRVVSIGTSVEDLLKDP 776

Query: 684 EDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--------- 732
           ++   H  S  LCGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A          
Sbjct: 777 KNSEWHKVSIELCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGTEAHQVQKVASDF 836

Query: 733 ----SHLMG------QDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772
                H MG      ++ K K L   LK    +V+ +           + I ++ + +Q 
Sbjct: 837 DKELDHTMGLASGPIKETKAKELGVSLKKLSISVLDKRSLNDKFNKLDKSIKDQLKAVQK 896

Query: 773 IHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             +K+ L+     LN ED   +       +S +    ++K +   ++ L+K+ +S  I L
Sbjct: 897 EESKKVLEVVNTWLNAEDAKDY------LVSFVPISANAKAITEAINLLKKQHKSKSIYL 950

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +  S +K A    V  E +    +A +LA
Sbjct: 951 ITGS-DKVAHGCYVSDEAIAKGIDATNLA 978


>gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis]
 gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis]
          Length = 1025

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 335/972 (34%), Positives = 481/972 (49%), Gaps = 121/972 (12%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
            +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P      + +A
Sbjct: 86   VRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRA 145

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
              T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LLTK + L
Sbjct: 146  CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIGWAWELLTKIYKL 204

Query: 121  DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
               R+Y T +  DE        EA   W +   L  ++++     DNFW M +TGPCGPC
Sbjct: 205  PADRIYATYFGGDEKAGLAPDAEARDFWLQF--LPPERVLPFGCKDNFWEMGDTGPCGPC 262

Query: 173  SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            +EI +D+     G    S   + +    IEIWNLVF+QF +++      LP   +DTGMG
Sbjct: 263  TEIHYDR----VGNRDASQLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVDTGMG 318

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLR 280
             ER+ +VLQ K +NYD D+F  +  A +Q TG +     +         + +RV+ DH+R
Sbjct: 319  FERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVDMAYRVVADHIR 378

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPE 339
            + SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+  +   MG  +PE
Sbjct: 379  TLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNIVVKVMGDVFPE 438

Query: 340  LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPL 398
            LIQ ++ I E ++ E+  FGKTL +G+         + GK   L    AF L+DT+G PL
Sbjct: 439  LIQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQGKVSCLQD--AFVLWDTYGFPL 496

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            D+ Q +   RGL  +D+  FN A++E R R+R                         +  
Sbjct: 497  DLTQLMAEERGL-WVDVEGFNNAMDEARERSR---------------------NAQNKQA 534

Query: 459  GYDLLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQ 509
            G D++     M  D      K  + +T+            S++KAI    E +    S  
Sbjct: 535  GGDII-----MDADATSALHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSN 589

Query: 510  KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            +V +V + T FYAE GGQ+ DTG   G     Q+++VQ    G  VH   + R   R  +
Sbjct: 590  EVGIVLESTSFYAEQGGQIFDTGSLEGTFGSFQVSNVQIFG-GFVVHIGSLTRAAPRLSV 648

Query: 570  --SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
               ++  +DY  R  ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+
Sbjct: 649  GDKVICKVDYDRRTLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPV 708

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV----- 681
              A L+ IE  VN+ I   L V  +     +A   +G  A+ G  Y D VRVV++     
Sbjct: 709  DPALLRKIESIVNEQIKAELEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 768

Query: 682  ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---- 731
                  E ++    S+ LCGGTH+S+T E     ++SE  I  G+RRI A+T   A    
Sbjct: 769  DLLADPENKEWSSISAELCGGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAM 828

Query: 732  -RSHLMGQ--DEKLKSLASFLKVSQGNVVGRVEE-----------------IWEEYRKLQ 771
              + L+ Q  DE  K+  S L+    ++  RV+                  + +E RK Q
Sbjct: 829  ELASLLEQEADEISKTEGSLLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQ 888

Query: 772  LIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVD-----SKELKSVMDALQKKIQSGII 825
               ++  +Q  V+      ++A        IS VD     +   ++V   LQKK  S ++
Sbjct: 889  KKISEENMQKAVKIATEMAEVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMV 948

Query: 826  MLVGISKEKKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
              +      K  V   V E  D   +    +    + K L G  G G+  +A   G  G 
Sbjct: 949  FSID-ETTNKVVVCAGVAEKGDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGV 1007

Query: 884  KADQAIAGVASF 895
              D A+   A F
Sbjct: 1008 HLDAAMNLAAEF 1019


>gi|258538952|ref|YP_003173451.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|257150628|emb|CAR89600.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 710

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 288/740 (38%), Positives = 418/740 (56%), Gaps = 64/740 (8%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++ VG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF
Sbjct: 117 WFDFDPKRLYVTVYPKDKGTKELWRKV-GVADDHIVE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           +D+G+         P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGM
Sbjct: 173 YDRGQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285
           GLER+  V+Q     ++ DLF  +I+A+E+++  K  G    + V+ ++I DH R+ +F 
Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFA 289

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  + 
Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQP 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            I++ + SE+ RF +TLD G+ LL+ +++ L   GK EI   D AFKL+DT+G P+++  
Sbjct: 350 FIQKVIESEEARFRQTLDAGVNLLNQIVAELKQNGKKEISGAD-AFKLFDTYGFPVEMTN 408

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     GL  +D+  F + +  QR RAR                  ++  G+   +  D+
Sbjct: 409 EYAEDEGLK-VDMAGFKKNMAAQRDRARKAR-------------GDRQSMGSQDTVLMDI 454

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              SKF       L  K          + ++AIV   ++ +E  +GQ  +++FD+TPFYA
Sbjct: 455 TTPSKFTGWTE--LDHK---------HATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYA 502

Query: 523 EAGGQLGDTGCAIG-DGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           E GGQ+ D G     DG  L ++TDVQ    G  +H   V +G L       L++D   R
Sbjct: 503 EMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTV-KGKLTKGQPYWLSVDRLRR 561

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN
Sbjct: 562 KKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVN 621

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I   LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH +
Sbjct: 622 QKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPT 676

Query: 701 STGEIMLLYIVSESSIRAGI 720
           +T  + L  I SES +  G 
Sbjct: 677 NTNALGLFKITSESVLAQGF 696


>gi|322712022|gb|EFZ03595.1| alanyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 952

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 332/967 (34%), Positives = 505/967 (52%), Gaps = 102/967 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPV--YQAV 61
           +R  F ++ Q+ GH ++PS S++P +DPTL+FTN+GM  FK IF G   Q  P+   +  
Sbjct: 11  VRKAFFDYMQQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD
Sbjct: 71  ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY T ++         D+EA +LW  I G+  D+I+     DNFW M + GPCGP S
Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLDI-GMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVFMQF++Q       LP   IDTGMG 
Sbjct: 190 EIHYDK----IGGRNAAHIVNQDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ERM + LQE  +NY  D F  L +  ++VTG+     KY  ++       +RVI DH+R+
Sbjct: 246 ERMVSALQETDSNYATDCFTPLFKQIQEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            SF I DG +P ++GRGYV+RRI+RR + YAR     E       +LPAL + MG  +PE
Sbjct: 306 LSFAITDGAVPNSDGRGYVIRRILRRGVRYARKYLNAEIGSFFSKILPALVSHMGDQFPE 365

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLP 397
           L++ +L I+E L  E+E F +TLDRG    +     +     + L+GDV ++LYDT G P
Sbjct: 366 LVKKQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKAGVKKLDGDVVWRLYDTFGFP 425

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   RGL  ID    + A E+ R  ++A    + +       F+  + +   Q 
Sbjct: 426 VDLTQIMAEERGLE-IDESEVSVAKEKAREASKAVKASVDT-------FAKLDVHQIAQL 477

Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
               + R    +KF+K D K   Q      T   S+         E+ E+   G    ++
Sbjct: 478 DQQKVARTDDDAKFVKGDSKGKVQLIFDGKTFHNST--------KELPEKTAIG----IL 525

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE+GGQ+ DTG   I D +  ++ DVQ    G  +H   +E G L +   ++ 
Sbjct: 526 LDKTNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYG-GFILHSGYIEYGALSSGDEVIC 584

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +   EL+
Sbjct: 585 EYDELRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELR 644

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----------- 681
            IE   N+ I +N  + ++ ++ + A    G  A+ G  Y + VRVVS+           
Sbjct: 645 KIETLSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDP 704

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSHL 735
           + ++   +S   CGGTHV  TG I  L +V ES I  GIRRI A TG      QR  +  
Sbjct: 705 KKQEWRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGEAAHQVQREAAEF 764

Query: 736 MGQDEKLKSLA-SFLKVSQGNVVGR-----------VEEIWEEYRKLQL-IHAKRKLQLN 782
             + + L+++     K +Q  VV +            +E+   ++K+   + A++K +  
Sbjct: 765 SKKLDILEAMPFGPAKDAQTKVVSQELSQLVISTLTKDELNTRFQKIATSVIAEQKKRQK 824

Query: 783 VE---DLSC-----HKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            E    + C      +  DV+ F+  +    ++K L  V    Q K ++  + + G S+E
Sbjct: 825 AEAGAAVGCVIKHFEEKEDVDYFVGRLPISANAKALTEVFKHFQAKDKTKSVYIFGGSQE 884

Query: 834 KKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + A V  + V   L  +   A   A + + V+GG  GG  P   Q  G      D A+  
Sbjct: 885 EGAVVHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEP-TRQGQGTKPENIDDAVEV 943

Query: 892 VASFLKK 898
              +L++
Sbjct: 944 ARKWLEE 950


>gi|312215385|emb|CBX95337.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 968

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 299/795 (37%), Positives = 434/795 (54%), Gaps = 71/795 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61
           +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K IF G   P       +  
Sbjct: 15  VRQTFLDYFKERGHSFVPSSSVVPLSDPTLLFTNAGMNQYKAIFQGTIDPSSDFAQLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLTK + +D
Sbjct: 75  TNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTKVYGID 134

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            +RLY+T ++ +E+      A +LWK + G+  D I+     DNFW M + GPCGPCSE+
Sbjct: 135 TKRLYVTYFEGNEDLEPDLKAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGPCSEV 193

Query: 176 FFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            +D  E   G    ++     +    IEIWN VFMQ+ ++  +    LP   IDTG+G E
Sbjct: 194 HYDLREPEGGNYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGLGYE 253

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282
           R+ +VLQ   +NYD D+F  L +  ++VTG + Y G    +        +RV+ DH R  
Sbjct: 254 RLVSVLQHTKSNYDTDVFTPLFKRIQEVTGAREYRGGFGADDPDGIDTAYRVVADHTRMM 313

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPEL 340
           SF IADG +P N GRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+
Sbjct: 314 SFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFEVEIGDFFSKIIPTLVDQMGDMFPEI 373

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397
            + +  I E L  E++ F K+LDRG V+ +         G ++ L GD  ++LYDT+G P
Sbjct: 374 RKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKAKGSND-LPGDDVWRLYDTYGFP 432

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT-- 455
           +D+ + +   RGL   D     + +E+ + +AR  S G              +K GA   
Sbjct: 433 VDLTKLMAEERGLNIND-----KEVEKAQEKAREASKG-------------DKKAGAAVV 474

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVE 512
           +F  +DL  G+    +D       P     N +++ +KAI    + +   +E   G++  
Sbjct: 475 KFDVHDL--GALDAMDDVPKTDDSPKYGREN-ITATIKAIYHNKQFLKSTKEVPEGEQFG 531

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FYAE GGQ  DTG  + DG   + I +VQ  A G  +H   ++ G L+    +
Sbjct: 532 VLLDKTNFYAEQGGQEYDTGRLLVDGEAEISIENVQVYA-GYVLHTGYLKYGELKVGSEV 590

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +H   ++ AE
Sbjct: 591 IAEFDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAE 650

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--EYED--- 685
           ++ +E      I  +  V  + +    A   +G  A+ G  Y D VRVVSV    ED   
Sbjct: 651 IEKVESISTTYIKADAKVYAKDVPLSKAKEITGVRAVFGETYPDPVRVVSVGQPVEDLLA 710

Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                  G  S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ A +     +
Sbjct: 711 DPKNPAWGKLSVEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYNVQRLAN 770

Query: 740 EKLKSLASFLKVSQG 754
           +    L SF K+  G
Sbjct: 771 DFATRLESFGKMPFG 785


>gi|294932634|ref|XP_002780365.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC
           50983]
 gi|239890298|gb|EER12160.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC
           50983]
          Length = 982

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 335/972 (34%), Positives = 495/972 (50%), Gaps = 108/972 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKP 56
           +S+ S +R TF+ FF +K G   L SS ++P NDPTL+F N+GM  FK IF GQ   + P
Sbjct: 24  LSDPSVVRDTFINFFVEKKGATFLKSSPVVPHNDPTLLFINAGMNQFKPIFLGQLDKDHP 83

Query: 57  VY--QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
            Y  +  T  QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG +FK   I  AW+LL
Sbjct: 84  FYGVKRATNTQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGNWSFGDFFKAEQIPWAWELL 143

Query: 115 TKEFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           T+ F LD  RLY T Y           D+EA  LW K   L  D +I     +NFW M +
Sbjct: 144 TEVFGLDPARLYATYYGGDPKEPEVPADDEARDLWLKF--LPPDHVIPFGMKENFWEMGD 201

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           TGPCGPCSEI +D      GG   S+    +    IEIWNLVFMQ+ ++N      LP  
Sbjct: 202 TGPCGPCSEIHYDN----VGGRDASALVNMDDPTVIEIWNLVFMQYNRENDGSLTRLPHP 257

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA-SEQVTGMK-YEG---NNI-VNHRVIV 276
            +DTGMG ER+   L  KT+NYD D+FK +  A  EQ+ G++ Y G   +NI V +RV+ 
Sbjct: 258 CVDTGMGFERICAALTGKTSNYDTDVFKPIFAAIQEQIPGLRSYTGELTDNIDVGYRVVA 317

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +  ++DG +P+NEGRGYVLRRI+RRA+ Y    L         L+PA+   +G 
Sbjct: 318 DHIRTLTVALSDGAVPSNEGRGYVLRRILRRAVRYGTEKLNAPAGFFNKLVPAVVESLGE 377

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE++  +  ++  +  E+E+F +TL+RG+   +   S   + ++L+G  AF+L+ T G
Sbjct: 378 AFPEIVANQADVQALIADEEEQFARTLERGIREFNSRASKT-EGKVLSGRDAFELFTTFG 436

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-------AHSLGLGSGTTEKIWFSL 448
            P D+ Q +   RG+  +D+ SF +  E  R +++         +L L +  T  +   L
Sbjct: 437 FPCDLTQVMAQERGMT-VDVQSFEEEFEAFRQKSKESNNFTMGSNLQLFADQTNYLENEL 495

Query: 449 K-EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           K  K   T    +D  +G       +  LC      + +G   +    V+ G       +
Sbjct: 496 KVPKTDETCKYAWDSAKGEGGQWSSQ--LCA-----IWDGKKWLDTIDVKSG------YA 542

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGI- 564
            + + +V   TPFYAE GGQ+ D G  +    G R  + + QK  + + +H   ++  + 
Sbjct: 543 QKTIGLVLSVTPFYAEQGGQIFDVGTIVDPLTGARFDVKNTQKFGQYV-LHIGSMDSAVD 601

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L+    +  ++DYQ R  ++ NH+ATH+L+ AL  +LG    Q GS + P  LRFD  
Sbjct: 602 AALKVGSEVRASVDYQRRALIAKNHTATHILNFALRQVLGDKCDQRGSLVDPSRLRFDFA 661

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV 681
            +KPIT+ +LK IE   N  I ++L V    +    A    G  A+ G  Y D VRVVSV
Sbjct: 662 QNKPITNEQLKEIEQICNQQIQKHLNVFANDVQLAKAKDIRGLRAVFGETYPDPVRVVSV 721

Query: 682 -----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                      E + G   S   CGGTHV ++ EI    I +E  I  GIRRI A TG +
Sbjct: 722 GEAIDTLLKETEVDFGHEFSIEFCGGTHVGNSQEIFKFVITAEEGIAKGIRRIVAATGPQ 781

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNV----VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           A      +   L    +  K  +G V    + ++     E +++ L  AK+ +   ++DL
Sbjct: 782 AAVEASIKTTDLMEELNSAKALKGEVLDHAIAQLRNKLNEEKEVSLT-AKKDMLCLLDDL 840

Query: 787 SCH-----------------KIADVNFMSHIISE------------VDSKELKSVMDALQ 817
                               KI +    S   SE             D+K +++ +D++ 
Sbjct: 841 KTQQIKEEKKKAKEVQKQAAKIGEQLAESIGASEGKFLITQCDELLADAKAMQNAVDSIA 900

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           KK+    + +V  S  K A VLI V + +  + +A +   +  +  GG GGG  P  AQ 
Sbjct: 901 KKLPELPVCIVSASSSKLA-VLITVPKSMSKKVSAKEWLNVCLETCGGKGGGS-PMKAQG 958

Query: 878 GGPNGNKADQAI 889
                +K  + I
Sbjct: 959 QSQEPSKVAETI 970


>gi|329946643|ref|ZP_08294055.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526454|gb|EGF53467.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 903

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 326/941 (34%), Positives = 499/941 (53%), Gaps = 88/941 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +    +
Sbjct: 3   TSEIRSRWLDYFAANKHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEEAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT       +
Sbjct: 62  VQKCIRT----NDIDNVGVTTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T++++D+ +   W +  G+ A++I  +   D  WS  + GP G C EI +D
Sbjct: 118 GLDGDRLWMTIWEKDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIHYD 177

Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERF----ILPKMSIDTGMGLER 232
           +G    P G P    +G+R++EIWNLVF +F   + K   F     L + +IDTG GLER
Sbjct: 178 RGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281
           +A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+RS
Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIRAAEELSGKVYGRGSAGPEAGDAYHDDVRMRVVADHVRS 297

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M ++YPEL 
Sbjct: 298 ALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKASYPELE 357

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHG 395
            +   I E    E++ F +TL  G  +LD  ++   KD       +++G  AF+L+DT+G
Sbjct: 358 TSWSAISEIAFGEEDAFRRTLTAGTTILDTAVASAKKDAGRTGRPLMSGRSAFELHDTYG 417

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYG 453
            P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  + +++  L KE  G
Sbjct: 418 FPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEMGG 476

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            + F+GY                         +   + V  ++  G       S  +VEV
Sbjct: 477 GSAFLGY-----------------------TESSAEASVAGVLVDGVPQSVVTSPAEVEV 513

Query: 514 VFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+TPFYAE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +       
Sbjct: 514 ILDRTPFYAEMGGQLADQGTIRLADGGTVEVNDVQAPVKGLHVHRGTLTEGTIAVGEKAF 573

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   +   ++
Sbjct: 574 AQIDVARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALAGEQV 633

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE+ VN  ++++L V   +M+ + A A+GA AL G KY   VRVVS+    GG  S  
Sbjct: 634 AGIEERVNAKLSEDLTVTDEVMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWSKE 689

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LC GTHV +TG I  + +V ESSI +G+RRI+A+ G  A     G   K  +L S +   
Sbjct: 690 LCAGTHVPTTGHIGRIAVVGESSIGSGVRRIDALVGDGA----YGYQAKEHALVSQISTM 745

Query: 753 QGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKE 808
            G   GR EE+ E    L  +L  A+++L    +     + A +   +  + EV   S  
Sbjct: 746 VG---GRPEELPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVPVGEVRLASAN 802

Query: 809 LKSV----------MDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856
           L SV          +DA  +   S   ++ VG     +  +++       D+   A  L 
Sbjct: 803 LGSVGAADAVRSLTLDARSRLGDSEPAVVAVGAVLNSRPVIVVATNAGARDKGIRAGALV 862

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           R +A+VL  GGGGG+  +AQ GG N +  D+A+  VA  ++
Sbjct: 863 RTAAQVL-DGGGGGKDDLAQGGGQNPDALDEALRTVADQIR 902


>gi|308235922|ref|ZP_07666659.1| alanyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
          Length = 894

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 333/932 (35%), Positives = 501/932 (53%), Gaps = 79/932 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   +L++F  +GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +T+
Sbjct: 3   TAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMTS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232
           +G    G   G + +  R+IEIW+LVF  F+  N + +  L       + +IDTG GLER
Sbjct: 177 RGPKY-GNDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           +A ++Q K N Y+ D    +I+A+E+++G+KY  NN   V  RV+ DH+RS+  +++DG+
Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + E 
Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVSEA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406
              E++ F +TL++G  +LD  +    K    D I+ G  AF L+DT+G P+++  ++  
Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+ RARA +L         ++  +K++      F+GY     
Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGY----- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEA 524
                            D ++   S V AIV+ G+   ++VS    VEV+ D+TPFYAE+
Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYAES 511

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R  L
Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+ I
Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNERI 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  STG
Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEI----GDGWSRELCGGTHAKSTG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E +
Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLESL 747

Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDALQ 817
             +     RKL  ++     QLN    +  ++ +    S    ++  K + +    DAL+
Sbjct: 748 LNKMKDSDRKLSSVYES---QLND---AVPELVEAAKQSGATVKLAVKNVGNFGSFDALR 801

Query: 818 KKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866
           K               I+ L G+++E +  V +   +   D    A DL R ++KVL GG
Sbjct: 802 KTTLDVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVL-GG 860

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGG+P  AQ GG + +K D+A+  V S + K
Sbjct: 861 GGGGKPDFAQGGGTDASKIDEALDAVKSEVAK 892


>gi|300121464|emb|CBK21983.2| unnamed protein product [Blastocystis hominis]
          Length = 935

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 321/957 (33%), Positives = 479/957 (50%), Gaps = 100/957 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59
           + +R TF+EFF++ GH  + SS ++P +DPTL+F N+GM  +K IF GQ  P       +
Sbjct: 12  AKVRQTFIEFFEERGHTFVKSSPVVPLDDPTLLFANAGMNQYKPIFLGQVDPSSPLAKLK 71

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLTK + 
Sbjct: 72  RACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEGAINFAWELLTKVYK 131

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD  RLY T ++         DEEA+ +W+  + L  D I++   +DNFW M E GPCGP
Sbjct: 132 LDPSRLYATYFEGSEEDGVPCDEEAYAIWR--THLPDDHILKGNKHDNFWEMGEVGPCGP 189

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   +   +++    +EIWNLVFMQF + +      LP   +DTGM
Sbjct: 190 CSEIHYDR----IGGRNAADLVNKDDPNVLEIWNLVFMQFSRDSTGALHPLPAKHVDTGM 245

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG--------NNIVNHRVIVDHL 279
           G ER+ ++LQ K +NYD D+F  L +A   V+G+ +Y G           + +RV+ DH+
Sbjct: 246 GFERITSILQNKMSNYDTDVFLPLFKAIHAVSGVSEYTGLVAGQNGAQKDMAYRVVADHI 305

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYP 338
           R+ +  I DG  P+N GRGYVLRRI+RR + Y + +   +P     L+P +   M SA+P
Sbjct: 306 RTLTMAITDGAAPSNTGRGYVLRRILRRGVRYGQQILKCKPGFFSQLVPTVVENMKSAFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLL--DGVLSHLGKDEILNGDVAFKLYDTHGL 396
           EL +    ++E +  E+  F +TL++GL     +         +++ GDVAF LY T G 
Sbjct: 366 ELEEKMCFVQEVILDEELSFNRTLEKGLKRFAQEAEACQASGAKVITGDVAFFLYGTLGF 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  +D+  FNQA+E  R  A+ +                 +K GA Q
Sbjct: 426 PIDLTELMAEEAGLK-VDMEGFNQAIERARMEAKTN-----------------KKNGAEQ 467

Query: 457 -FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK--VEV 513
             +  +  + S   K    V    P       + S V A     +   E ++ +   V V
Sbjct: 468 TTLVMEAEQVSHLQKSGVPVTDDLPKYTWFETLESEVVAFYGADKSFPEQIAPESGVVGV 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V  QTPFYAE+ GQ+ D G   G      +  V     G  +H  +VE+G LR   ++  
Sbjct: 528 VLKQTPFYAESEGQIADRGSLSGANGSFSVQQVLSYG-GYVLHIGVVEQGTLRLHDAVTC 586

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           ++DY  R  ++ NH+ TH+++ AL  +L + V Q GS +    LRFD  H+K ++ A+L 
Sbjct: 587 SVDYDYRLLIAPNHTLTHVMNWALRRVLQTEVDQKGSLVDDQKLRFDFNHTKAVSPAQLS 646

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAAL--LGTKYNDRVRVVSVEYEDGGVH 689
            IE  VN+ +   L V T++   ++A  I S  A     G   N R    SVE+      
Sbjct: 647 EIERLVNEKVHDALKVFTKVCPIDEARKICSLRAVFGEAGYPSNPRWMDYSVEF------ 700

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE--------- 740
               CGGTH+S+  +     IV E SI  GIRRI AITG RA   ++  ++         
Sbjct: 701 ----CGGTHLSNLAQAKFFAIVEEGSISKGIRRIVAITGDRANESIVLANQIDGMLSHAR 756

Query: 741 -----KLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQ-LIHAKRKLQLNVEDLSC--- 788
                +L++  + L+ +    V  V       EE +KL+  + A+RK Q+  +  S    
Sbjct: 757 SLHGKELEAAVAELQQTIPTAVISVATKATFKEELKKLEKTMMAERKEQIAKQLESAIAE 816

Query: 789 --------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
                    +  +   + + +  +DS     +M  +++        +  +   K A   +
Sbjct: 817 AEKVVKEVKEKQEGGRVFYTVEGIDSSNASKLMQKIRELDSESSYFIFSVDTAKVAMYAL 876

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           V  E     F+A       A V GG GGG  P  AQ    + +  + A A     LK
Sbjct: 877 VAKEKASKTFSAKTWISEVAAVCGGKGGGS-PMQAQGQSKDPSNVEAAFAKAEEILK 932


>gi|296454023|ref|YP_003661166.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183454|gb|ADH00336.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 871

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 331/902 (36%), Positives = 496/902 (54%), Gaps = 76/902 (8%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PS+SLI  N PT +FT +GMVPF     G++ P  + +T+ QKCVR      D+D VG+
Sbjct: 1   MPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSNQKCVRT----LDIDEVGK 55

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137
           T RH TFF+MLGNFS G YFKE AI  AW+LLT       +  D  +L++T + +DEEA 
Sbjct: 56  TTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQSEGGYGFDPEKLWVTTFTDDEEAR 115

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGER 196
            +WK   G   + +      DNFW+    GP GPCSEI+ D+G E    G P + E   R
Sbjct: 116 SIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDRGPEYGRDGGPAADET--R 172

Query: 197 YIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250
           +IEIW+LVF  +E  N + +  L       + +IDTG GLER+A ++Q K N Y+ D   
Sbjct: 173 FIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLERLAYLMQGKQNIYETDEVF 232

Query: 251 HLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
            +I+A+E+++G KY  +    V  RV+ DH+RS+  +++DG+ P+N GRGYVLRR++RR 
Sbjct: 233 PVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGVRPSNVGRGYVLRRLLRRT 292

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           +   R+LG T+P++  LLP     M ++YPEL      + E    E++ F +TL+ G+ +
Sbjct: 293 VQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEAAYGEEDAFRRTLENGIEI 352

Query: 369 LDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
           LD  +    K  D +++G  AF L+DT+G P+++  ++   +G+  +D   F + + EQ+
Sbjct: 353 LDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQGVK-VDEAKFRELMAEQK 411

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           SRARA +L         ++   K+       F+GY                      D++
Sbjct: 412 SRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY---------------------TDMS 450

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQI 543
               + V  I+Q+G+    AV+G   VEV+ D+TPFYAEAGGQL D G  + D G  L++
Sbjct: 451 --ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAVLEV 508

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DVQK  + + VH   +  G L     +   ID   R  ++ +H+ATH++H AL   LG 
Sbjct: 509 DDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREELGP 568

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             +Q GS   P+ LRFD   SK    + + ++E+ VND +  NL V T+ M  +DAIA G
Sbjct: 569 QATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAIALG 628

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A  L G KY D VRVVS+  EDG   S  LCGGTHV   G+I ++ I+SE+SI +G+RR+
Sbjct: 629 AMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKIGMVNILSEASIGSGVRRV 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRKL 779
           +A+ GQ A      +   +  L+  L      +  RV     ++ E  R+L  ++ + +L
Sbjct: 686 DAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLAKLKESDRRLASMY-ESQL 744

Query: 780 QLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI-----QSG-----IIMLV 828
             +V  L    +AD  N  + +   V +      +DAL+K +     Q G     ++ L 
Sbjct: 745 AASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTVLDVRAQLGEDAPVVVALA 800

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G++++ K  V +   E        A DL R +AKVL GGGGGG+P  AQ GG + +K  +
Sbjct: 801 GVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGGGKPDFAQGGGVDASKIGE 859

Query: 888 AI 889
           A+
Sbjct: 860 AL 861


>gi|57524852|ref|NP_001005836.1| alanyl-tRNA synthetase, cytoplasmic [Gallus gallus]
 gi|53131091|emb|CAG31790.1| hypothetical protein RCJMB04_11d4 [Gallus gallus]
          Length = 913

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 313/861 (36%), Positives = 457/861 (53%), Gaps = 87/861 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFKENQHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W  + GL+  +I+     DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPCSEI +D+ G+     L   +++    +EIWNLVF+QF ++       LPK SIDTGM
Sbjct: 185 GPCSEIHYDRIGDRDASHL--VNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279
           GLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH 
Sbjct: 243 GLERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+P
Sbjct: 303 RTITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +   ++++ +  E+++F KTL RG  +LD  +  +G  + + GD A+ LYDT+G P+
Sbjct: 363 ELKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + +   +   Y   +  
Sbjct: 423 DLTGLIAEEKGLV-VDMEGF----EEERKNAQLKSQGKGAGGEDLLMLDI---YAIEELR 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPP---IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                RG +   +  K      P    D  + V++ VKAI ++ + VEE  +GQ+  +V 
Sbjct: 475 A----RGLEVTDDSPKYGYTSDPSGTYDFGSLVAT-VKAIRREKKFVEEVSTGQECGIVL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           D+T FYAE GGQ+ D G  + D      + + T    +  G +V H     G L+    +
Sbjct: 530 DRTCFYAEQGGQIYDQGYMVKDDDSKEDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQV 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L+ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 590 HLSIDETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQE 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681
           +K +E   N +I +  PV  R      A A  G  A+    Y D VRVVS+         
Sbjct: 649 IKKVEGIANQMIEEAKPVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLA 708

Query: 682 --EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  AR       
Sbjct: 709 DPSGPAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEAR------- 761

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-- 797
           + L+ + S  KV                  L  + AK K+Q         +I D++ M  
Sbjct: 762 KALRKVESLKKV------------------LSALDAKVKVQTAPNKDVQKEITDLSEMLA 803

Query: 798 SHIISEVDSKELKSVMDALQK 818
           + +I +    EL+  + AL+K
Sbjct: 804 TAVIPQWQKDELREAVKALKK 824


>gi|240278873|gb|EER42379.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 961

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 336/986 (34%), Positives = 496/986 (50%), Gaps = 137/986 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P     T    
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 63  -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     G    S   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 196 EIHYDR----IGARNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L +   ++TG + Y G       + I   +RV+ DH+R+
Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396
           + + +  + E L  E+  F KTLDRG  L +         G  ++   DV ++LYDT G 
Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADV-WRLYDTFGF 430

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID    N   EE R +++  S G G  T + +  ++ +  G  +
Sbjct: 431 PVDLTRLMAEERGLT-ID----NAEFEEARLKSKEASKGQGKRTADVVKLTVHD-LGLLE 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
            +  D+ + +   K  R              ++S +KAI    + V+   +   G++  +
Sbjct: 485 TMD-DVPKTNDDAKFGR------------GNITSQIKAIYYNKKFVDSTKDIPQGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687
           + IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVS  VE E+    
Sbjct: 651 EKIERISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQN 710

Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           VH       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E
Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKE 770

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
             + L  F K+  G                + I AK  LQ+++  LS   +    F    
Sbjct: 771 FGERLRRFEKMELG--------------PQKEIEAKL-LQVDLNQLSISAVEKARFREQ- 814

Query: 801 ISEVDSK-----------ELKSVMDAL-------QKKIQSGIIMLVGISKEKKA--SVLI 840
            +++  K           E K  +DA+       + K+ S ++M + IS   KA    L 
Sbjct: 815 FAQIHKKVLEGQKAAQKLESKKALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLN 874

Query: 841 VVTEDLLDRFNAV----------------------------DLARLSAKVLGGGGGGGRP 872
            V   + D+   V                            D A   + ++GG  GG  P
Sbjct: 875 FVKTKMQDKSVYVFAADKEAGKVVHGCHVAQSLSEQGATPNDWANAVSSIVGGRAGGKAP 934

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            ++   G    K D+AI     +L+K
Sbjct: 935 -ISIGNGTEAEKLDEAIKAATEYLEK 959


>gi|189203303|ref|XP_001937987.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187985086|gb|EDU50574.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 966

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 290/781 (37%), Positives = 426/781 (54%), Gaps = 81/781 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
           + + +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 11  SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLT  
Sbjct: 71  LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130

Query: 118 FDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + +D +RLY+T +      + D EA +LWK + G+  D I+     DNFW M + GPCGP
Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGP 189

Query: 172 CSEIFFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSE+ +D  E   G    ++     +    IEIWN VFMQ+ ++  +    LP   IDTG
Sbjct: 190 CSEVHYDLREPEGGKYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           MG ER+ +VLQ K +NYD D+F  L +  +++TG + Y G       + I   +RV+ DH
Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQEITGAREYRGKFGAEDPDGIDTAYRVVADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R  SF IADG +P N GRGYV+RR++RR   YAR    T+       ++P L  +MG  
Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
           +PE+ + +  I E L  E++ F K+LDRG V+ +     + +   + L GD  ++LYDT+
Sbjct: 370 FPEIKKKQQDIVEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL  ID    ++ +EE + +AR  S G              +K  A
Sbjct: 430 GFPVDLTKLMAEERGLK-ID----DKEVEEAQEKAREASKG--------------DKKAA 470

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIV---E 503
              + +D+         D   L   P +  T+         ++S++KAI    + +   +
Sbjct: 471 GALVKFDV--------HDLGALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTK 522

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVER 562
           E   G++  V+ D+T FYAE GGQ  D G  + DG   + IT+VQ  A G  +H   ++ 
Sbjct: 523 EVPEGEQFGVLLDRTNFYAEQGGQEYDMGKLVVDGEACIDITNVQVYA-GYVLHTGYLQD 581

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G L     ++   D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +
Sbjct: 582 GELSVGSEVIAEFDESRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFS 641

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---- 677
           H   ++ AEL  +E   +  I ++  V  + +    A    G  A+ G  Y D VR    
Sbjct: 642 HKAGLSEAELDKVESISSKYIKEDAKVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSV 701

Query: 678 -------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                  +  V+ E     S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ 
Sbjct: 702 GVPVEELLADVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQE 761

Query: 731 A 731
           A
Sbjct: 762 A 762


>gi|326773292|ref|ZP_08232575.1| alanine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636522|gb|EGE37425.1| alanine--tRNA ligase [Actinomyces viscosus C505]
          Length = 903

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 299/809 (36%), Positives = 449/809 (55%), Gaps = 73/809 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +    +
Sbjct: 3   TSEIRSRWLDYFAANEHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEEAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT       +
Sbjct: 62  VQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI +D
Sbjct: 118 SLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIHYD 177

Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERF----ILPKMSIDTGMGLER 232
           +G    P G P    +G+R++EIWNLVF +F   + K   F     L + +IDTG GLER
Sbjct: 178 RGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281
           +A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+RS
Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIKAAEELSGKAYGRGSAGPEAGEAYHDDVRMRVVADHVRS 297

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M S+YPEL 
Sbjct: 298 ALMLICDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPELE 357

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHG 395
                I E    E++ F +TL  G  +LD  ++   K+       +++G  AF+L+DT+G
Sbjct: 358 TGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGRSGRPLVSGKSAFELHDTYG 417

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYG 453
            P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  + +++  L KE  G
Sbjct: 418 FPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEMGG 476

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            + F+GY                  +   D T  V+ I+   V Q  +   A    +VEV
Sbjct: 477 GSTFLGY-----------------TESSADAT--VTGILVDGVPQSVVTAPA----EVEV 513

Query: 514 VFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V D+TPF+AE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +       
Sbjct: 514 VLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEKAF 573

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   + S ++
Sbjct: 574 AQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASDQI 633

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE+ VN+ ++++L V   +M+ + A A+GA AL G KY  +VRVVS+    GG  S  
Sbjct: 634 SGIEERVNNRLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKQVRVVSI----GGDWSKE 689

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A     G   K  +L S L   
Sbjct: 690 LCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGA----YGYQAKEHALVSQLSTM 745

Query: 753 QGNVVGRVEEIWEEYRKL--QLIHAKRKL 779
            G   GR E++ E    L  +L  A+++L
Sbjct: 746 VG---GRPEDLPERVESLMTRLKDAEKRL 771


>gi|313471806|sp|Q5AQL1|SYA_EMENI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|259486703|tpe|CBF84773.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_8G03880) [Aspergillus nidulans FGSC A4]
          Length = 961

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 291/771 (37%), Positives = 424/771 (54%), Gaps = 72/771 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++FQ  GH  + SS + P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 16  VRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLT+ + LD
Sbjct: 76  VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWELLTQVYGLD 135

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA  LWK + G+  D I+     DNFW M + GPCGPCS
Sbjct: 136 PGRLYVTYFEGNKEGGLQPDLEAKALWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 194

Query: 174 EIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +S   ++    +EIWN VF+Q+ ++N      LP   +DTGMG 
Sbjct: 195 EIHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNRENDGSLRSLPNKHVDTGMGF 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281
           ER+ +VLQ+K++NYD D+F  + Q  + +TG + Y+G    +        +RV+ DH+R+
Sbjct: 251 ERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDDSDGIDTAYRVVADHVRT 310

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
             F I+DG++P NEGRGYV+RR++RR   YAR     E       ++P +  ++G  +PE
Sbjct: 311 LMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTVVEQLGDMFPE 370

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           L Q +  + E L  E+  F KTLDRG    +     +    D  L+G   ++LYDT G P
Sbjct: 371 LKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTAGDHKLHGADVWRLYDTFGFP 430

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   RGL  ID    ++  EE R +A+  S G    TT           G+ + 
Sbjct: 431 VDLTRIMAEERGLE-ID----DRQFEEARHKAKEASKGQKKTTT-----------GSVKL 474

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEV 513
             +DL +  K     +     K  I     V++ +KAI   G+    +       +++ +
Sbjct: 475 DVHDLGKLEKMNGVPKTDDSAKFEI---GNVTAQIKAIY-HGKTFHSSTQNLDDSEQIGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  + DG   L++ DVQ+ A G  +H   ++ G  + + +++
Sbjct: 531 ILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYA-GYVLHTGYMKYGSFKVDDTVI 589

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  + Q GS ++ + LRFD +H  P+T  EL
Sbjct: 590 CEYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVSAEKLRFDFSHKSPVTDVEL 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV--- 688
             IED     I +N  V ++ +    A   +G  A+ G  Y D VRVVSV  E   +   
Sbjct: 650 VKIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETYPDPVRVVSVGAELDEILKN 709

Query: 689 --------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                    S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A
Sbjct: 710 VEDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDA 760


>gi|311114977|ref|YP_003986198.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946471|gb|ADP39175.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 894

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 333/932 (35%), Positives = 500/932 (53%), Gaps = 79/932 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   +L++F  +GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +T+
Sbjct: 3   TAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMTS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232
           +G    G   G + +  R+IEIW+LVF  F+  N + +  L       + +IDTG GLER
Sbjct: 177 RGPKY-GKDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           +A ++Q K N Y+ D    +I+A+E+++G+KY  NN   V  RV+ DH+RS+  +++DG+
Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + E 
Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVSEA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406
              E++ F +TL++G  +LD  +    K    D I+ G  AF L+DT+G P+++  ++  
Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+ RARA +L         ++  +K++      F+GY     
Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGY----- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEA 524
                            D ++   S V AIV+ G+   ++VS    VEV+ D+TPFYAE 
Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYAER 511

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R  L
Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+ I
Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNERI 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  STG
Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEI----GDGWSRELCGGTHAKSTG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E +
Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLESL 747

Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDALQ 817
             +     RKL  ++     QLN    +  ++ +    S    ++  K + +    DAL+
Sbjct: 748 LNKMKDSDRKLSSVYES---QLND---AVPELVEAAKQSGATVKLAVKNVGNFGSFDALR 801

Query: 818 KKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866
           K               I+ L G+++E +  V +   +   D    A DL R ++KVL GG
Sbjct: 802 KTTLDVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVL-GG 860

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGG+P  AQ GG + +K D+A+  V S + K
Sbjct: 861 GGGGKPDFAQGGGTDASKIDEALDAVKSEVAK 892


>gi|298253344|ref|ZP_06977136.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532739|gb|EFH71625.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 894

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 334/941 (35%), Positives = 503/941 (53%), Gaps = 97/941 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + + +
Sbjct: 3   TAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232
           +G    G   G + +  R+IEIW+LVF  ++  N + +  L       + +IDTG GLER
Sbjct: 177 RGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           +A ++Q K N Y+ D    +I+A+E+++G+KY  NN   V  RV+ DH+RS+  +++DG+
Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N GRGYVLRR++RR +   R+LG  +P++  L P   + M  +YPEL      + E 
Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKSAMEPSYPELNDTFHEVSEA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406
              E++ F +TL++G  +LD  +    K    D I+ G  AF L+DT+G P+++  ++  
Sbjct: 356 AYGEEDAFRRTLEKGTTILDFAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY     
Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGY----- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEA 524
                            D ++   S V AIV+ G+   ++VS    VE++ D+TPFYAE 
Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGSVKSVSAPANVEIILDRTPFYAER 511

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R  L
Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+ I
Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNERI 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  STG
Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKSTG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +V R+E +
Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLESL 747

Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKE-----LKSV- 812
             +     RKL  ++   + QLN              +  ++ EV +S E     LK+V 
Sbjct: 748 LNKMKDSDRKLASVY---EAQLN------------EAVPTLVDEVKNSNEKVKLALKNVG 792

Query: 813 ----MDALQKKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR 857
                DAL+K +             ++ L G++++ +  + +   E        A DL R
Sbjct: 793 NFGSFDALRKTVLDIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVR 852

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            ++KVL GGGGGG+P  AQ GG + +K D+A+    S + K
Sbjct: 853 TASKVL-GGGGGGKPDFAQGGGTDASKLDEALEAAKSEVAK 892


>gi|325090131|gb|EGC43441.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 961

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 335/986 (33%), Positives = 497/986 (50%), Gaps = 137/986 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P     T    
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 63  -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     G    S   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 196 EIHYDR----IGARNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L +   ++TG + Y G       + I   +RV+ DH+R+
Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396
           + + +  + E L  E+  F KTLDRG  L +         G  ++   DV ++LYDT G 
Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADV-WRLYDTFGF 430

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID    N   EE R +++  S G G  T + +  ++ +  G  +
Sbjct: 431 PVDLTRLMAEERGLT-ID----NAEFEEARLKSKEASKGQGKRTADVVKLTVHD-LGLLE 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
            +  D+ + +   K  R              ++S +KAI    + V+   +   G++  +
Sbjct: 485 TMD-DVPKTNDDAKFGR------------GNITSQIKAIYYNKKFVDSTKDIPQGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687
           + IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVS  VE E+    
Sbjct: 651 EKIERISTDYIRQNCVVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQN 710

Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           VH       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E
Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKE 770

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
             + L  F K+     +G  +EI             + LQ+++  LS   +    F    
Sbjct: 771 FGERLRRFEKME----LGPQKEI-----------EAKLLQVDLNQLSISAVEKARFREQ- 814

Query: 801 ISEVDSK-----------ELKSVMDAL-------QKKIQSGIIMLVGISKEKKA--SVLI 840
            +++  K           E K  +DA+       + K+ S ++M + IS   KA    L 
Sbjct: 815 FAQIHKKVLEGQKAAQKLESKKALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLN 874

Query: 841 VVTEDLLDRFNAV----------------------------DLARLSAKVLGGGGGGGRP 872
            V   + D+   V                            D A   + ++GG  GG  P
Sbjct: 875 FVKTKMQDKSVYVFAADKEAGKVVHGCHVAQSLSEQGATPNDWANAVSSIVGGRAGGKAP 934

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            ++   G    K D+AI     +L+K
Sbjct: 935 -ISIGNGTEAEKLDEAIKAATEYLEK 959


>gi|283782871|ref|YP_003373625.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441998|gb|ADB14464.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 894

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 333/941 (35%), Positives = 502/941 (53%), Gaps = 97/941 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + + +
Sbjct: 3   TAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232
           +G    G   G + +  R+IEIW+LVF  ++  N + +  L       + +IDTG GLER
Sbjct: 177 RGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           +A ++Q K N Y+ D    +I+A+E+++G+KY  NN   V  RV+ DH+RS+  +++DG+
Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N GRGYVLRR++RR +   R+LG  +P++  L P   T M  +YPEL      + E 
Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKTAMEPSYPELNDTFHEVSEA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406
              E++ F +TL++G  +LD  +    K    D ++ G  AF L+DT+G P+++  ++  
Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY     
Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGY----- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                            D ++   S V AIV+ G+  V+   +   VE++ D+TPFYAE 
Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGSVKSVTAPANVEIILDRTPFYAER 511

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R  L
Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+ I
Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNERI 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  STG
Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKSTG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +V R+E +
Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLESL 747

Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKE-----LKSV- 812
             +     RKL  ++   + QLN              +  ++ EV +S E     LK+V 
Sbjct: 748 LNKMKDSDRKLASVY---EAQLN------------EAVPTLVDEVKNSNEKVKLALKNVG 792

Query: 813 ----MDALQKKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR 857
                DAL+K +             ++ L G++++ +  + +   E        A DL R
Sbjct: 793 NFGSFDALRKTVLDIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVR 852

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            ++KVL GGGGGG+P  AQ GG + +K D+A+    S + K
Sbjct: 853 TASKVL-GGGGGGKPDFAQGGGTDASKLDEALEAAKSEVAK 892


>gi|21910594|ref|NP_664862.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|21904795|gb|AAM79665.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
          Length = 825

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 313/873 (35%), Positives = 472/873 (54%), Gaps = 72/873 (8%)

Query: 47  KNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERA 106
           K  F G   P    +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ A
Sbjct: 2   KKYFDGSVIPENPRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEA 57

Query: 107 IQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           I+  ++LLT    FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW + 
Sbjct: 58  IEWGFELLTSPDWFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG 114

Query: 165 ETGPCGPCSEIFFDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQER 216
             GP GP +EIFFD+GE       GL   +E  E +RYIEIWN+V  QF       + E 
Sbjct: 115 -AGPSGPDTEIFFDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEY 173

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRV 274
             LP  +IDTG GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +V
Sbjct: 174 KELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKV 232

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           I DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M 
Sbjct: 233 IADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIME 292

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLY 391
           S YPE+++ +  IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLY
Sbjct: 293 SYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLY 351

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS             
Sbjct: 352 DTYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS------------- 397

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G        ++  S+F  +             T  + S +  I+   E  E    GQ +
Sbjct: 398 MGMQNETLAGIVEESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL 444

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            +VF QTPFYAE GGQ+ DTG    D      ++ DVQK   G  +H   V    L    
Sbjct: 445 -LVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGT 502

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +  L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++
Sbjct: 503 NYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSN 562

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            EL+ IE  VN+ I   L + T   + E A   GA AL G KY   VRVV +     G +
Sbjct: 563 EELRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNY 617

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +
Sbjct: 618 SVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATV 677

Query: 750 KVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE 803
           K  Q  +   +V+ + +  R LQ  +A+ K +              +   V F++  +  
Sbjct: 678 KAPQLKDAAAKVQALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDV 737

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D+  L++  D  ++K  S +++LV    EK   ++   T+D+    +A ++ +  A ++
Sbjct: 738 ADAGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV 793

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+P MA +GG + +K  + +A VA  +
Sbjct: 794 -AGRGGGKPDMAMAGGSDASKIAELLAAVAEIV 825


>gi|219125523|ref|XP_002183027.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405302|gb|EEC45245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 959

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 308/880 (35%), Positives = 469/880 (53%), Gaps = 70/880 (7%)

Query: 7   IRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58
           +R+TF++FF++    H    SS+  P NDPTL+FTN+GM  FK +F GQ  P      V 
Sbjct: 13  VRSTFIDFFEQEPRSHTFQRSSACAPLNDPTLLFTNAGMNQFKPVFLGQVDPNSPLANVQ 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +AV + QKC+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AI  AW LLT+ +
Sbjct: 73  RAVNS-QKCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIDYAWQLLTEVY 131

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY T +  D+        EA  LW +   L A ++I     DNFW M E GPCG
Sbjct: 132 RLDPDRLYATYFQGDDALGLAPDFEARDLWLRY--LPAARVIGCDVRDNFWEMGEVGPCG 189

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSEI +D+ G         + +   + IEIWN+VF+Q+ ++  + +  LP   IDTGMG
Sbjct: 190 PCSEIHYDRIGNRDAAAFVNADD--PQVIEIWNIVFIQYNREPDKLQ-TLPAKHIDTGMG 246

Query: 230 LERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGN--------NIVNHRVIVDHLR 280
           LER+ ++LQ K +NYDID+F+ L  + +       Y G             +R I DH R
Sbjct: 247 LERLVSILQNKDSNYDIDVFQPLFAKLATHTDRGPYTGRVGTDDVDLKDTAYRAIADHAR 306

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           + +F IADG +P NEGRGYVLRRI+RRA  Y + + +  P     L+P +    G  YPE
Sbjct: 307 TLAFAIADGAVPNNEGRGYVLRRILRRATRYGQQILHCAPGFFATLIPVVVETFGETYPE 366

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL--NGDVAFKLYDTHGLP 397
           L  A+  I E ++ E++ FG  LDRG+     +   L ++++L  +G+ AF +YDT G P
Sbjct: 367 LRAAESTILEIVQEEEQAFGDMLDRGIKFFTELEGELKENKVLEISGEKAFFMYDTLGFP 426

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +    GL+ +D+  F  A+E Q++R+R       +G    +    ++       
Sbjct: 427 VDLTELMAQEAGLS-VDMAGFANAMETQKTRSRQAQKTARAGNAPVLELVAEQ---TAWL 482

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS--GQKVEVVF 515
           +  ++L      K    V  Q P        ++++    + G +  ++ +  G  V +V 
Sbjct: 483 VDQNVLPTDDGFKYKWDV--QLP--------ATVMALYGKDGFLTGDSTADQGDFVGIVL 532

Query: 516 DQTPFYAEAGGQLGDTGC------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           D++ FYAEAGGQ  D G       A     R  +TDVQ  A G  +H   VE G +  + 
Sbjct: 533 DKSSFYAEAGGQEADVGTLEFLDEAGTITGRFTVTDVQVYA-GFLLHKGAVEEGSIAVDQ 591

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   +DY+ RR ++ NHS TH+L+ AL  +LG    Q GS    + LRFD  H + +T 
Sbjct: 592 AVNCKVDYERRRMIAPNHSMTHVLNAALRNVLGEKCDQRGSLCNNEKLRFDFAHKRAMTM 651

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV 688
            E+K++E+     +A   PV +++M+  DA A  G  A+ G  Y D VRV+++    G  
Sbjct: 652 LEIKAVEEFCQKSVADAQPVKSKVMSLADAQAIDGVRAVFGEVYPDPVRVIAI----GDS 707

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGGTH+ +T E     +V E+++  GIRR+ A+T   A+  L G   K ++L   
Sbjct: 708 SSVEFCGGTHLENTAEAEAFVLVEETAVAKGIRRVTAVTKDAAKRALAG-GVKFQALVDK 766

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD- 805
           ++       G  ++     + L    + A  K +L     +  K A+      +   VD 
Sbjct: 767 IEQLPATTSGLYKQAGSARKDLDAAFVSAVLKAELRTRLEAIQKKANDAAKKALQQRVDL 826

Query: 806 --SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             +   K V  AL++K+Q+ +++ V I+ + KAS  ++ T
Sbjct: 827 VLNDVKKDVAVALEEKMQT-LVLNVDIAADSKASQRVMNT 865


>gi|239608271|gb|EEQ85258.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 962

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 294/771 (38%), Positives = 423/771 (54%), Gaps = 72/771 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P     T    
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76

Query: 63  -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   IDTGMG 
Sbjct: 196 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L     ++TG + Y G       + I   +RV+ DH+R+
Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397
           + + +  + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G P
Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFP 431

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   RGL  ID    N   EE R +A+  S G G  T + +  ++ +       
Sbjct: 432 VDLTQLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKQTADVVKLTVHD------- 479

Query: 458 IG-YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
           +G  + +       +D K             ++S +KAI    + V+   +   G++  +
Sbjct: 480 LGLLETMNNVPKTNDDAKF--------GRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687
           + IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVS  VE E+    
Sbjct: 651 EKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQN 710

Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           VH       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A
Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEA 761


>gi|261203393|ref|XP_002628910.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239586695|gb|EEQ69338.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 962

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 296/778 (38%), Positives = 420/778 (53%), Gaps = 86/778 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P     T    
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76

Query: 63  -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   IDTGMG 
Sbjct: 196 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L     ++TG + Y G       + I   +RV+ DH+R+
Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397
           + + +  + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G P
Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFP 431

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   RGL  ID    N   EE R +A+  S G G  T + +             
Sbjct: 432 VDLTQLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKQTADVV------------- 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIVE---EAV 506
                    K    D  +L     +  TN         ++S +KAI    + V+   +  
Sbjct: 474 ---------KLTVHDLGLLETMDNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIP 524

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
            G++  ++ D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G  
Sbjct: 525 EGEQFGIILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSF 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H  
Sbjct: 584 NVNDSVIAEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKS 643

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VE 682
            ++ ++L+ IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVS  VE
Sbjct: 644 AVSDSDLEKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVE 703

Query: 683 YED--GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            E+    VH       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A
Sbjct: 704 LEEILQNVHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEA 761


>gi|171915187|ref|ZP_02930657.1| alanyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 917

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 324/955 (33%), Positives = 484/955 (50%), Gaps = 120/955 (12%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKP------- 56
           + IR +FL+FF++  H ++PS ++     D   +FTN+GM  F  IF G E+P       
Sbjct: 4   AQIRQSFLDFFKEKQHTIVPSDNVGYTSRDGARIFTNAGMNQFVPIFLG-ERPADVDTWP 62

Query: 57  --VYQAVTT----VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
             +++ + T     QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI  A
Sbjct: 63  GVLHKGLPTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKDAISWA 122

Query: 111 WDLLTKEFDLDQRRLYITVY--------DEDEEAFKLW-KKISGLSADKIIRITT---ND 158
           W+L+ + +     R++ T+Y        + DEE++  W +K   +  D  I I      D
Sbjct: 123 WELVIERWKFPPTRVFATIYQPGEGDPAERDEESWGYWAEKFRSVGLDPEIHIVNGNKKD 182

Query: 159 NFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY-------------IEIWNLVF 205
           NFW MAETGPCGPC+EI  D     PG  P   +EG +              IEIWN VF
Sbjct: 183 NFWMMAETGPCGPCTEIHID---LTPG--PRDLDEGRQREGAKLVNGSSADCIEIWNNVF 237

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQ----------EKTNNYDIDLFKHLIQA 255
           +Q+     +    LP   +DTGMG ER+ +++Q           K +NYD D+FK +   
Sbjct: 238 IQYNANADKTFSKLPAQHVDTGMGFERVTSIIQGTRNFTDFENAKISNYDTDVFKPIFDE 297

Query: 256 SEQVTGMKY-------------EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
             +++G  Y             E   I V  RV+ DH+R+ SF IADGI P N  R Y L
Sbjct: 298 ISKMSGKTYASTLPASGSTGDTEQEKIDVAFRVLADHIRTLSFSIADGISPGNNDRNYTL 357

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ Y R LG+ EP    L+  L   MG  +PEL   K  ++  L+ E+E F +T
Sbjct: 358 RRILRRAVKYGRTLGFKEPFFYKLVDVLAQHMGEVFPELRARKEHVKSVLKMEEESFNRT 417

Query: 362 LDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           LDRG+ L +     L GK   + G+VAF+L DT G P+D+ Q +   RGL  +D+  + +
Sbjct: 418 LDRGISLFESEADKLAGKGTEITGEVAFRLSDTFGFPIDLTQLLARERGLT-VDVPEYER 476

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            L EQ+ R+   S     G  + +  S  E    T+FIGYD L                 
Sbjct: 477 LLAEQKKRSTEDS----KGRKQVVSLSEIETKEPTKFIGYDNLEAP-------------- 518

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                              +++E      K  VV D +PFYAE GGQ+GD+G  I     
Sbjct: 519 ------------------AKVLEVVSMKDKTAVVLDSSPFYAEMGGQVGDSGALIIGADS 560

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             I++ QK        H +         +   L ++   RR +  +H+ TH++H AL  +
Sbjct: 561 FPISNTQKVGNTWL--HFLDGEDTPSVGVEAQLAVEPSRRRAIERHHTVTHIMHWALHEV 618

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND-IIAQNLPVVTRIMNREDA 659
           +    +Q GS + PD L FD  +S  +T+A+L  IE  VN+ I+A ++     +   E  
Sbjct: 619 VSKEATQKGSFVGPDKLTFDF-NSAALTAAQLADIERLVNERIVANDVVSWDELPYAEVK 677

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              G   L G KY D+VRVV V  +   +  +S  LCGGTH  STGEI L  +VSES++ 
Sbjct: 678 SNPGIMQLFGEKYGDKVRVVQVGGQAHALNGYSMELCGGTHTRSTGEIGLFRLVSESAVS 737

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQ-LIH 774
           AG+RR+EAI G  A        + LK LA  + ++QG  ++  ++E + ++ + L+  + 
Sbjct: 738 AGVRRLEAIAGLEAYRAARSDADLLKLLAGKV-LAQGTLDLEKKIETLLDQQKALEKALK 796

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + ++ +      +   +A  + +   + EVD     +V DAL K + SGI+++ G +   
Sbjct: 797 SAQQREAAARAKALLGLASNDAIIANLGEVDGDYAMAVSDAL-KSLFSGIVVVAGTAG-G 854

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             S++  V++D   +  A  + +  A ++ GG GGG+P  A+ GG    K D A+
Sbjct: 855 NVSLIATVSKDHQAKLQAGKIIQAIAPIV-GGKGGGKPDFARGGGKEVAKVDAAL 908


>gi|328858383|gb|EGG07496.1| hypothetical protein MELLADRAFT_48072 [Melampsora larici-populina
           98AG31]
          Length = 966

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 293/780 (37%), Positives = 439/780 (56%), Gaps = 83/780 (10%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59
           +R TF+ +FQ K  H+ +PSSS+ P +DPTL+FTN+GM  +K+IF G   P      + +
Sbjct: 21  VRKTFINYFQEKYQHQFVPSSSVCPLDDPTLLFTNAGMNQYKSIFLGTIDPSNPLSKIKR 80

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE  +++AW+LLT+ + 
Sbjct: 81  AVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEDGLKMAWELLTELYG 139

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T ++ DE        E+ ++W ++ G+  D I+     DNFW M  TGPCGP
Sbjct: 140 LPKDRLYVTYFEGDEKQGLEPDLESKRIWLEL-GVQEDHILPGNAKDNFWEMGATGPCGP 198

Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           CSEI +D+   + G   GS  +++    IEIWN VF+++ +++      LP   +DTGMG
Sbjct: 199 CSEIHYDR---VGGRNAGSLVNQDDPLVIEIWNNVFIEYNRESDGSLKELPSKHVDTGMG 255

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLR 280
            ER+ ++LQ+K +NYD D+F+ + +  +Q+TG + YEG   +         +RV+ DH+R
Sbjct: 256 FERLVSILQDKKSNYDTDIFRPIFEKIQQLTGARPYEGKLGIEDQDGIDTAYRVVADHIR 315

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSAY 337
           + +F I+DG +P N GRGYVLRRI+RR   Y R   +  P+      L+P L  +MG  +
Sbjct: 316 TLTFAISDGGVPNNVGRGYVLRRILRRGARYIR-KKFNVPIGTFFSKLMPTLIEQMGDEF 374

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395
           PE+ + +L + E L  E++ F  TLDRG  + +   + + K+  ++L+G   +KLYDT G
Sbjct: 375 PEIEKRRLEVIEILNEEEDSFSLTLDRGEKIFEKYCNRVKKNNGKVLDGKEVWKLYDTFG 434

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   ++      GID   F  A  E +         L  G  +KI        GA 
Sbjct: 435 FPIDLTL-LMAEEAGIGIDQDGFEIAQSESKE--------LSKGGKKKI-------VGA- 477

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG-----VSSIVKAIVQQGEIV---EEAVS 507
              G +L   S  + E    +   P  D ++      +++ VKAI Q GE     +E  S
Sbjct: 478 ---GVELDVHSIAVLESNSSV---PKTDDSSKFSLTTINATVKAIFQAGEFYSSSKELKS 531

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILR 566
           G+   V+ D+T FYAE GGQ  DTG  I +G +   + DVQ    G  +H   +  G ++
Sbjct: 532 GEPFGVILDKTNFYAEQGGQENDTGTLIIEGEMIFDVEDVQ-VFNGYVLHIGNLSEGEIK 590

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E  +  + D   R+ +  NH+ TH+L++AL   LG H+ Q GS ++ +  RFD +H + 
Sbjct: 591 KEDLVQSSFDELRRKPIKNNHTGTHILNYALRETLGDHIDQKGSLVSSNKFRFDFSHKQQ 650

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYED 685
           + ++EL+ IE   ND I +N  V ++ M   +A    G  A+ G +Y D VRVV +  E 
Sbjct: 651 VKASELEQIEKICNDWILKNHSVYSKEMKLSEAEKIPGLRAVFGERYPDPVRVVVIGPEP 710

Query: 686 GGV------------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +            +S   CGGTHV  T EI  L +V ES I  GIRRI A+TG+ A++
Sbjct: 711 IELDADQLNESKWLNYSVEFCGGTHVKKTNEIKELILVEESGIAKGIRRIVAVTGEEAKT 770


>gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera]
          Length = 960

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 299/783 (38%), Positives = 415/783 (53%), Gaps = 93/783 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58
           + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P      + 
Sbjct: 14  AKVRDTFISFFEAKEHVNWVSSPVVPLNDPTLLFANAGMNQFKPIFLGTADPNTPLSKLT 73

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--- 115
           +A  T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI+ AW+LLT   
Sbjct: 74  RACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIEWAWELLTEAI 132

Query: 116 --KEFDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
             K + L   R Y T +  DE      D+EA  +W K   L    ++     DNFW M +
Sbjct: 133 CNKVYKLPTDRFYATYFGGDEQLGLAPDDEARDIWLKF--LPPGHVLPFGCKDNFWEMGD 190

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           TGPCGPC+EI FD+     G    +S    +    IEIWNLVF+QF +++      LP  
Sbjct: 191 TGPCGPCTEIHFDR----IGNRDATSLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAK 246

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHR 273
            +DTGMG ER+ ++LQ K +NYD D+F  +  A    TG       +         + +R
Sbjct: 247 HVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIHLATGAPLYSGKVGTEDVDKVDMAYR 306

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTE 332
           V+ DH+R+ SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+  +   
Sbjct: 307 VVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVGVVVKV 366

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG  +PEL Q ++ I   + +E+  FGKTL +G+         + + +IL+G  AF L+D
Sbjct: 367 MGDVFPELKQHEMHIRGIIAAEEASFGKTLIKGIEKFKKAAQEV-QGKILSGQEAFVLWD 425

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G PLD+ Q +   RGL  +D++ FN A++E R R+R                +  +K 
Sbjct: 426 TYGFPLDLTQLMAEERGLT-VDVMGFNIAMDEARERSRN---------------AQNKKA 469

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVE 503
           G           G+  M  D      K  +  T+ +S         S++KAI    E +E
Sbjct: 470 G-----------GAIVMDADATAALHKMGVAATDDISKFTWFEDHESVIKAIYTGIEFLE 518

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH---AIV 560
            A +G +V ++ + T FYAE GGQ+ DTG   G     Q+ +VQ    G FV H      
Sbjct: 519 SAAAGDEVGIILETTSFYAEQGGQIFDTGSLEGSCGSFQVCNVQ--IYGGFVLHIGSVTG 576

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E G       ++  +DY  R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD
Sbjct: 577 EIGRFSVGDKVICKVDYDRRKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFD 636

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVV 679
            +H KPI    L+ IE  VND I   L V  +     DA   +G  A+ G  Y D VRVV
Sbjct: 637 FSHGKPIHPDHLRRIESIVNDQIKDELDVYGKEATLADAKRINGLRAVFGEVYPDPVRVV 696

Query: 680 SV--EYEDGGVH---------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           ++  + ED             S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T 
Sbjct: 697 TIGRKVEDLLADPDNAEWLSVSAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTT 756

Query: 729 QRA 731
             A
Sbjct: 757 DSA 759


>gi|327349463|gb|EGE78320.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1088

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 294/771 (38%), Positives = 423/771 (54%), Gaps = 72/771 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P     T    
Sbjct: 126 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 185

Query: 63  -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK + L+
Sbjct: 186 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 245

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 246 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 304

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   IDTGMG 
Sbjct: 305 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGY 360

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L     ++TG + Y G       + I   +RV+ DH+R+
Sbjct: 361 ERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRT 420

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 421 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPE 480

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397
           + + +  + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G P
Sbjct: 481 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFP 540

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   RGL  ID    N   EE R +A+  S G G  T + +  ++ +       
Sbjct: 541 VDLTQLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKQTADVVKLTVHD------- 588

Query: 458 IG-YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
           +G  + +       +D K             ++S +KAI    + V+   +   G++  +
Sbjct: 589 LGLLETMNNVPKTNDDAKF--------GRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGI 640

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 641 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 699

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 700 AEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 759

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687
           + IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVS  VE E+    
Sbjct: 760 EKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQN 819

Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           VH       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A
Sbjct: 820 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEA 870


>gi|242798694|ref|XP_002483222.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716567|gb|EED15988.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1002

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 322/980 (32%), Positives = 497/980 (50%), Gaps = 125/980 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R+ F+++F++ GH  +PSSS++P  DPTL+F N+GM  +K+IF G   P      + +A
Sbjct: 57  VRSEFIDYFKERGHTFVPSSSVVPHADPTLLFANAGMNQYKSIFLGTVDPQSDFAHLKRA 116

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V + QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI  +W+LLTK F L
Sbjct: 117 VNS-QKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAITYSWELLTKVFGL 175

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  RLY+T ++ +E        EA ++W+ + G+  D I+     DNFW M + GPCGPC
Sbjct: 176 DPSRLYVTYFEGNESGGLEPDLEAKEIWRNV-GVPEDHILPGNMKDNFWEMGDQGPCGPC 234

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG   +S   ++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 235 SEIHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 290

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVN--------HRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L +  +++TG  +Y+G             +RV+ DH+R
Sbjct: 291 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAPEYQGRFGAEDADGVDTAYRVVADHVR 350

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 351 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVEQMGVMFP 410

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG    +          +  L+G   ++LYDT G 
Sbjct: 411 EIKEKQAEVMEVLNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 470

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID   F    EE R +A+  S G      E +   + +      
Sbjct: 471 PVDLTQIMAEERGLS-IDEAEF----EEARLKAKEASKGQKKAAAETVKLDVHD------ 519

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEV 513
            +G  L   S   K D       P I+      SIVKAI      ++       G+++ V
Sbjct: 520 -LG-KLDNMSDVPKTDDSSKFDSPRIE------SIVKAIYYSKNFIQSTADVPEGEQIGV 571

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG    DG   L++ DVQ    G  +H   ++ G L    S++
Sbjct: 572 ILDRTNFYAEQGGQENDTGIISIDGKAELEVGDVQSYG-GYVLHTGFIKYGSLAVGDSVM 630

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D + R+ +  NH+ TH+L+ AL  ILG  ++Q GS +  + LRFD +H   ++  EL
Sbjct: 631 CEFDDRRRQPIRNNHTGTHILNFALREILGDGINQKGSLVAAEKLRFDFSHKAAVSDKEL 690

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND----------------- 674
             IE    + I QN  V ++ +    A   +G  A+ G  Y D                 
Sbjct: 691 DQIERKSTEYIRQNCGVYSKEVPLATAREITGVRAVFGETYPDPVRVVSVGVEVEEILKD 750

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
               R   +S+E+          CGGTHVS +GEI  L I+ ES I  GIRRI A+TG  
Sbjct: 751 VKDPRWNDISIEF----------CGGTHVSRSGEIRELVILEESGIAKGIRRIIAVTGDE 800

Query: 731 A-RSHLMGQD-----EKLKSL----------------------ASFLKVSQGNVVGRV-E 761
           A ++ L   +     EKL++L                      ++  K    ++  R+ +
Sbjct: 801 ALQAQLTAVEFEKRLEKLRTLEHGPAKEMEMKQVQLELNQLAISAVQKAKFRDLFARINK 860

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKI 820
           ++ ++ + LQ +  K+   L        +  D   F++ + +  ++K +   ++ ++ K+
Sbjct: 861 QVLDDQKALQKVELKKAQDLIKAYFGAEENKDRTTFVTKLPATSNAKVVSESINFIKSKM 920

Query: 821 QSGIIMLVG--ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               +  +    S  K A    V         +  + A + +  +GG  GG  P  A   
Sbjct: 921 ADKTVYFIAPDPSGNKVAHGCHVAKAASELGLSPSEWANVVSGAVGGKAGGRAP-TAIGN 979

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N +K D+ +A    +L+K
Sbjct: 980 GTNVDKVDEGVALATEYLQK 999


>gi|189218662|ref|YP_001939303.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|205830140|sp|B3E044|SYA_METI4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189185520|gb|ACD82705.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 926

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 313/804 (38%), Positives = 431/804 (53%), Gaps = 124/804 (15%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
           M N + IR +FL+FF++ GH +LPS+SL+P   P L+FTN+GM PF   F G++K  Y  
Sbjct: 1   MMNSNEIRQSFLDFFKERGHTILPSASLVP-ESPNLLFTNAGMNPFVPFFLGKQKCPYVP 59

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   QKC+RAGGKHNDL+ VG    HHTFFEMLGN+SF  YFKE AI  AW+LLT+++
Sbjct: 60  PRIADSQKCLRAGGKHNDLEEVGYDTYHHTFFEMLGNWSFNDYFKEEAIHWAWELLTQKW 119

Query: 119 DLDQRRLYITVY----DE----DEEAFKLWKKI-SGLSADKIIRI---TTNDNFWSMAET 166
              + R+Y TVY    DE    DEEAF++W K+      + ++ I   T  DNFW M ET
Sbjct: 120 GFPKERIYATVYKPAPDEPGEFDEEAFRIWFKLFQKAKLNPLLHIHFGTKKDNFWMMGET 179

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERY-------IEIWNLVFMQFEQQNKQERFIL 219
           GPCGPCSEI  D         P    EG+         IEIWNLVF+Q          +L
Sbjct: 180 GPCGPCSEIHIDL-------TPDGQSEGKLINKNSPLCIEIWNLVFIQLNANEDGSFSLL 232

Query: 220 PKMSIDTGMGLERMATVLQ---------EKTNNYDIDLFKHLIQASEQVTGMKYEGN--- 267
           P   +DTGMGLER+  ++Q            ++YD DLF  LI+  + ++ + Y G+   
Sbjct: 233 PSRHVDTGMGLERVCAIIQGTSSFRQFNRTISDYDTDLFIPLIEKLQDISKVSYTGSIPP 292

Query: 268 -----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                        +  RVIVDH+R+ +F IADGILP+N GRG+VLRR++RRA+ + ++LG
Sbjct: 293 TPDFALDPQLKKDIAFRVIVDHVRALAFAIADGILPSNLGRGHVLRRLLRRAIRFGQILG 352

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
              P +  ++  L   MGS YPELI  +  IEE + SE+E F +TL  GL L + +   +
Sbjct: 353 VNPPFLFEMVDPLVKIMGSHYPELIDKQGHIEEVISSEEELFARTLSHGLALFEEIKQKM 412

Query: 377 --GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHS 433
              K + ++G  AF LYDT+G PLD+ Q +   +G + +D   F + + EQR R+  +H 
Sbjct: 413 IAEKRKEISGKEAFVLYDTYGFPLDLTQLLAKEQGFS-VDTQGFERLMAEQRRRSLLSHE 471

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             + S T              +QF+GY+ L                        + S  +
Sbjct: 472 EDIVSLTK------------TSQFVGYEELEAEA----------------EVVVLLSANR 503

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           AI                   FD+TPFYAE GGQ+GD G  + D  ++++ D  K A G 
Sbjct: 504 AI-------------------FDRTPFYAEMGGQVGDKGYVVFDQKKIEVLDTMKSASGA 544

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            VH  +     L+    + L +D + RR ++ +H+ATHLLH AL  +LG    Q GS + 
Sbjct: 545 HVHR-LAFTDDLKPGSRVYLQVDEKRRRCIAAHHTATHLLHWALRKVLGPETLQRGSYVG 603

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT------RIMNREDAIASGAAAL 667
           PD LRFD +H+ P+++ EL  IE  VN+ I  N PV        ++ N  D +      L
Sbjct: 604 PDRLRFDFSHTGPLSAEELAEIERLVNEKIELNDPVTAEEESYEKVKNNPDIL-----QL 658

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G KY  RVR+VSV     G +S  LCGGTHV STGEI    I+ E  + AGIRRIEA  
Sbjct: 659 FGEKYGQRVRIVSV-----GRYSKELCGGTHVRSTGEIGYFKILGEYGVSAGIRRIEAAC 713

Query: 728 GQRARSHLMG----QDEKLKSLAS 747
           G+     L      QD+K + L S
Sbjct: 714 GKALEQFLHAQAAEQDKKWQILHS 737


>gi|326927213|ref|XP_003209787.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Meleagris
           gallopavo]
          Length = 968

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 302/792 (38%), Positives = 432/792 (54%), Gaps = 65/792 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFKENRHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W  + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLDEGRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPCSEI +D+ G+     L   +++    +EIWNLVF+QF ++       LPK SIDTGM
Sbjct: 185 GPCSEIHYDRIGDRDASHL--VNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279
           GLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH 
Sbjct: 243 GLERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+P
Sbjct: 303 RTITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +   ++++ +  E+++F KTL RG  +LD  +  +G  + + GD A+ LYDT+G P+
Sbjct: 363 ELKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + +   +   Y   +  
Sbjct: 423 DLTGLIAEEKGLV-VDMEGF----EEERKNAQLKSQGKGAGGEDLLMLDI---YAIEELR 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPP---IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                RG +   +  K      P    D  + V++ VKAI ++ + VEE  +GQ+  +V 
Sbjct: 475 A----RGLEVTDDSPKYGYTSDPSGTYDFGSLVAT-VKAIRREKKFVEEVSTGQECGIVL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           D+T FYAE GGQ+ D G  + D           + +VQ +  G +V H     G L+   
Sbjct: 530 DRTCFYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVR--GGYVLHIGTLYGSLKVGD 587

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L+ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++
Sbjct: 588 QVHLSIDETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALST 646

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            E+K +E   N +I +   V  R      A A  G  A+    Y D VRVVS+       
Sbjct: 647 QEIKKVEGIANQMIEEAKTVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVDEL 706

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                   G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  AR  L  
Sbjct: 707 LADPSGPAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALR- 765

Query: 738 QDEKLKSLASFL 749
           + E LK L S L
Sbjct: 766 KVESLKKLLSAL 777


>gi|134083795|emb|CAK47129.1| unnamed protein product [Aspergillus niger]
          Length = 961

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 293/776 (37%), Positives = 424/776 (54%), Gaps = 82/776 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F++NGH  + SS ++P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 16  VRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFANLKSA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD
Sbjct: 76  VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKIYGLD 135

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            RRLY+T +        + D EA  LWK + G+  D I+     DNFW M + GPCGPCS
Sbjct: 136 PRRLYVTYFEGNKEGGLEPDLEAKDLWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 194

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 195 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMGF 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +VLQ K++NYD D+F  + Q    VTG + Y G       + I   +RVI DH+R+
Sbjct: 251 ERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVRT 310

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
             F I+DG +P N+GRGYV+RR++RR   YAR     E       ++P +  ++G  +PE
Sbjct: 311 LMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFPE 370

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGL 396
           L + +  + E L  E+  F KTLDRG    +         G D++   DV ++LYDT G 
Sbjct: 371 LRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADV-WRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID    ++  EE RSRA+  S G    + E +   +        
Sbjct: 430 PVDLTRIMAEERGLQ-ID----DREFEEARSRAKEASRGQKKTSAETVKLDV-------- 476

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSG 508
              +DL +         + +   P  D T       +++ VKAI          +E   G
Sbjct: 477 ---HDLGK--------LEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDG 525

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567
           +++ ++ D+T FYAE GGQ  DTG  + DG   L++ DVQ  A G  +H   ++ G    
Sbjct: 526 EQLGIILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYA-GYVLHTGFMKYGSFSV 584

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             +++   D   R  +  NH+ TH+L+ AL T+LG  V Q GS +  + LRFD +H   I
Sbjct: 585 GDTVICEYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAI 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686
           +  +L  IE+   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E G
Sbjct: 645 SDKDLARIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELG 704

Query: 687 GVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            +            S   CGGTHV  TG+I  L ++ E  I  GIRRI A+TG+ A
Sbjct: 705 EILQNVKDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDA 760


>gi|145640917|ref|ZP_01796499.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274431|gb|EDK14295.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 616

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/636 (42%), Positives = 374/636 (58%), Gaps = 49/636 (7%)

Query: 145 GLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GER 196
           G+ A++IIRI  N       DNFW+M +TGPCGPC+EIF+D G+ I GG PGS EE G+R
Sbjct: 16  GVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDR 75

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
           YIEIWN+VFMQF +        LP+ S+DTGMGLER++ VLQ   +NY+ID+FK LI  +
Sbjct: 76  YIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGLERISAVLQHVNSNYEIDIFKTLIAKT 135

Query: 257 EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
            ++ G     N  +  RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ +  LLG
Sbjct: 136 AEIVGATDLSNKSL--RVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHGHLLG 193

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
             E     L+P L   M  A  ++   +  +E+ LR E+E+F +TL+RGL LLD  L+ +
Sbjct: 194 AKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEALAQV 253

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS-LG 435
            KD++L+G+VAFKLYDT+G PLD+  D+   R +  ID  +F++ +E QR+RA+A S  G
Sbjct: 254 -KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNIT-IDEQAFDREMEAQRTRAQAASQFG 311

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
           +   +  ++        G T+F GY  +                          + + A+
Sbjct: 312 VDYNSVIRV-------DGETKFEGYTEVES-----------------------QAKITAL 341

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
              G+ VE   +GQ   V+ + TPFYAE+GGQ+GD+G     G+   + D QK  + +F 
Sbjct: 342 FYDGKSVESIEAGQSAVVILENTPFYAESGGQIGDSGYLSAQGVTFNVKDTQKYGQ-VFG 400

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H   + +G L+   S+   +D + R   S+NHSATHLLH AL  ILG HV Q GS ++  
Sbjct: 401 HIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSATHLLHAALRQILGLHVVQKGSLVSDK 460

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFD    + IT  +L  IE  VN  I  N PV T IM+ + A A GA AL G KY D+
Sbjct: 461 ALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGAMALFGEKYGDK 520

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRV+++     G  S  LCGG H   TG+I L  I++E+++ AGIRRIEA+TGQ A   L
Sbjct: 521 VRVLTM-----GDFSIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAIDWL 575

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             Q   L   A  LK     +V +      + RK +
Sbjct: 576 HNQQRILTQSADLLKSDVNTLVEKSNNFKTKRRKWK 611


>gi|297242856|ref|ZP_06926794.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296889067|gb|EFH27801.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 894

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 329/932 (35%), Positives = 497/932 (53%), Gaps = 79/932 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + + +
Sbjct: 3   TAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232
           +G    G   G + +  R+IEIW+LVF  ++  N + +  L       + +IDTG GLER
Sbjct: 177 RGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGLER 235

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           +A ++Q K N Y+ D    +I+A+E+++G+KY  NN   V  RV+ DH+RS+  +++DG+
Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + E 
Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNDTFHEVSEA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406
              E++ F +TL++G  +LD  +    K    D ++ G  AF L+DT+G P+++  ++  
Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY     
Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKSLEKPIDFLGY----- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                            D ++   S V AIV+ G+  V+   +   VEV+ D+TPFYAE 
Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGSVKSVTAPANVEVILDRTPFYAER 511

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R  L
Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGSPVNTNIDQVRRAAL 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+ I
Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNERI 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  STG
Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKSTG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E +
Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELAERLESL 747

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV-----MDALQK 818
             + +      + RKL    E      +  +   +   +E     LK+V      DAL+K
Sbjct: 748 LNKMK-----DSDRKLASVYEAQLNEAVPTLVDEAKNSNEKVKLALKNVGNFGSFDALRK 802

Query: 819 KI----------QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARLSAKVLGGG 866
            +             ++ L G++++ +  ++ V T +    F A   DL R ++KVL GG
Sbjct: 803 TVLDIRARLGEDAPVVVALAGVNEDDR-PMIAVATNEAARGFGAKAGDLVRTASKVL-GG 860

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGG+P  AQ GG + +K D+A+    S + K
Sbjct: 861 GGGGKPDFAQGGGTDASKIDEALEAAKSEVAK 892


>gi|325068847|ref|ZP_08127520.1| alanyl-tRNA synthetase [Actinomyces oris K20]
          Length = 782

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 296/809 (36%), Positives = 444/809 (54%), Gaps = 73/809 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +    +
Sbjct: 3   TSEIRSRWLDYFAANEHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEEAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT       +
Sbjct: 62  VQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI +D
Sbjct: 118 GLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIHYD 177

Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERF----ILPKMSIDTGMGLER 232
           +G    P G P    +G+R++EIWNLVF +F   + K   F     L + +IDTG GLER
Sbjct: 178 RGPAYGPDGGPAVDIQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281
           +A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+RS
Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIKAAEELSGKVYGRGSAGPEAGEAYHDDVRMRVVADHVRS 297

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M S+YPEL 
Sbjct: 298 ALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPELE 357

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHG 395
                I E    E++ F +TL  G  +LD  ++   K+       +++G  AF+L+DT+G
Sbjct: 358 TGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGSSGRPLVSGKSAFELHDTYG 417

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYG 453
            P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  + +++  L KE  G
Sbjct: 418 FPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEMGG 476

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            + F+GY                         +   + V  I+  G       +  +VEV
Sbjct: 477 GSTFLGY-----------------------TESSADATVTGILVDGVPQSVVTAPAEVEV 513

Query: 514 VFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V D+TPF+AE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +       
Sbjct: 514 VLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEKAF 573

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   + S ++
Sbjct: 574 AQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASDQI 633

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE+ VN  ++++L V   IM+ + A A+GA AL G KY   VRVVS+    GG  S  
Sbjct: 634 SGIEERVNARLSEDLAVTDEIMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWSKE 689

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A     G   K  +L S L   
Sbjct: 690 LCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGA----YGYQAKEHALVSQLSTM 745

Query: 753 QGNVVGRVEEIWEEYRKL--QLIHAKRKL 779
            G   GR E++ E    L  +L  A+++L
Sbjct: 746 VG---GRPEDLPERVESLMARLKDAEKRL 771


>gi|294790797|ref|ZP_06755955.1| alanine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458694|gb|EFG27047.1| alanine--tRNA ligase [Scardovia inopinata F0304]
          Length = 900

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 341/932 (36%), Positives = 506/932 (54%), Gaps = 91/932 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   F+ +F+K+ H +LPS+SLI  N PT +FT +GMVPF     G++ P  + VT+
Sbjct: 3   TSEIAKQFVTYFEKHDHLVLPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRVTS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AI  AW+LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKAEAIHYAWELLTLPQDQGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             ++ +L++T Y +DEEA  LWK   G+  + +  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFNKDKLWVTTYTDDEEARSLWKN-EGMDPEHMQVLGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMS---IDTGMGLE 231
           +G E    G P + E   RYIEIW+LVF  FE  N   K +  I+ +++   IDTGMGLE
Sbjct: 177 RGPEYGSDGGPIADEN--RYIEIWDLVFENFEVDNVKSKTDMHIVGELANKNIDTGMGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ K N Y+ D    +I+ +E+++G+ Y  + +N V  RV+ DH+RS+  ++ DG
Sbjct: 235 RVAYLLQGKENIYETDEVFPVIEEAERLSGLTYGEDPHNDVRFRVVADHVRSALMIMGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR++RR++   ++LG    +  HLLP    +M  +YPEL  +   + E
Sbjct: 295 VRPSNEGRGYVLRRLIRRSIRAMKMLGVDHEVFPHLLPVSKAQMRLSYPELDDSFDEVCE 354

Query: 350 TLRSEDERFGKTLDRGLVLLD--------GVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           T   E+  F +TLD+G  +LD        G L        ++G  AF L+DT+G P+++ 
Sbjct: 355 TAYGEEAAFRRTLDQGSSILDLAISKAKDGALKAGSDSPRVSGKDAFALHDTYGFPIELT 414

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            +I   +G+  +D  +F   + +Q+ RARA +L                K        YD
Sbjct: 415 TEIAREKGVE-VDQNAFRDLMAQQKRRARADAL---------------RKRHNVDLSVYD 458

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
            +R  K +KE         PI+ T     +    ++  I ++   VE       VE+V D
Sbjct: 459 DVR--KALKE---------PIEFTGYKEYSSRGKVLAIIDEELGSVESVTGPATVELVLD 507

Query: 517 QTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +TPFYAE GGQ+ D G    D G  L + DVQK  + ++VHH ++  G +     +   I
Sbjct: 508 RTPFYAEQGGQMADYGQISSDKGASLDVDDVQKPVKDLYVHHCLLTEGTISLGDEVSSAI 567

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D Q R  ++  H+ATH+LH  +  +LG   +Q+GS + PD LRFD   SK +TS++L  I
Sbjct: 568 DVQRRIGMTHAHTATHVLHKVVREVLGQKATQSGSVVDPDRLRFDFHWSKALTSSQLHQI 627

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN  I  +L V  + M    A++ GA  L G KY D VRVV++   DG   S  LCG
Sbjct: 628 ESRVNARIRDDLEVTWKNMPINQALSLGAMHLFGDKYGDVVRVVTIG-SDG--WSRELCG 684

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTH + TG I    ++SESS+  G+RRIEA+ G ++      Q   +  LAS L      
Sbjct: 685 GTHAARTGTIGSFTLLSESSVGTGVRRIEALVGDKSYEFNHSQHSLINKLASDLNSRPDE 744

Query: 756 VVGRV----EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK- 810
           +  R+    + + E  RKL  I+ K+     +ED+    ++     +  +  V SK +  
Sbjct: 745 LEERLTALEDRLKESDRKLAQIYEKQ-----IEDMIPQLVSQTQASADPVW-VASKNVGV 798

Query: 811 -SVMDALQKKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLAR 857
              ++AL+K            +  ++ LVG+S +    ++ V T     +    A DLAR
Sbjct: 799 FGSVEALRKAATDTRSRLGDDKPAVVALVGVSSDSGKPIICVATNAPARKNGIKAGDLAR 858

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++K+L GGGGGG+P  AQ GG + ++A+ A+
Sbjct: 859 AASKIL-GGGGGGKPDFAQGGGQDASQAEAAL 889


>gi|168042124|ref|XP_001773539.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675078|gb|EDQ61577.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 937

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 313/843 (37%), Positives = 441/843 (52%), Gaps = 102/843 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R TF  FF+   H  +PSS ++P +DPTL+F N+GM  FK IF G   P      + +A
Sbjct: 12  VRETFNSFFESKNHTFVPSSPVVPVDDPTLLFANAGMNQFKPIFLGTVDPRSARGNLKRA 71

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT  + L
Sbjct: 72  CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIAWAWELLTSVYKL 130

Query: 121 DQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY T +  DE      D+EA  +W+ +  L    ++     DNFW M ++GPCGPC
Sbjct: 131 PKDRLYATYFGGDENLGLAADDEARDIWRGL--LPESHVLPFGCKDNFWEMGDSGPCGPC 188

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI FD+     GG   SS    +    +EIWNLVF+QF ++      +LP   +DTG+G
Sbjct: 189 SEIHFDR----IGGRDASSLVNMDDPNCLEIWNLVFIQFNREQDGSLKVLPAQHVDTGLG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVDHLR 280
            ER+ +VLQEK +NYD DLF  +  A ++ TG + Y G        N  + +RV+ DH+R
Sbjct: 245 FERVTSVLQEKMSNYDTDLFTPIFGAIQKATGAREYSGKVGKDDTDNVDMAYRVVADHIR 304

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + SF IADG  P NEGR YVLRR++RRA+ Y R +L   E     L+  +   MG A+PE
Sbjct: 305 TLSFAIADGSRPGNEGREYVLRRMLRRAVRYGREVLKAQEGFFSGLVDIVVEVMGEAFPE 364

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + +  I+E +  E+  F +TL +G+       + + KD +L    AF L+DT G P+D
Sbjct: 365 LKKNQAKIKEIISEEESSFSRTLVKGIEKFKKAAAEV-KDGVLGAQDAFILWDTFGFPID 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +    GL  +D   FN+ +EE R +AR  + G   G        + E    +Q   
Sbjct: 424 LTELMAEEMGLK-VDKEGFNRTMEEAREKARG-ARGKAGGKA-----LVMEAEATSQLQK 476

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +L       +  K +  K P       +  VKAI       EE+ S + V +V D T 
Sbjct: 477 LGILP----TDDKPKYIWHKNP-------TVTVKAIFTSSGF-EESTSDEDVGIVLDTTS 524

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGILRTEMSLVLTIDY 577
           +YAE GGQ+ DTG   G      + +VQ    G +V H  +I   G +     +   +DY
Sbjct: 525 YYAEQGGQIYDTGVLEGPNGAFTVREVQ--IYGGYVLHIGSINNGGKISVGDKVTSQVDY 582

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  ++ NH+ THLL++AL  +LG H+ Q GS + PD LRFD +H KPI S +L  IE 
Sbjct: 583 ARRAVVAPNHTCTHLLNYALKEVLGDHIDQKGSLVAPDKLRFDFSHGKPIDSKDLGEIE- 641

Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSV----------- 681
               I+AQ +     +  +E ++A      G  A+ G  Y D VRVV++           
Sbjct: 642 ---AIVAQQIRDGMTVYAKEASLAEAKRIMGLRAVFGEVYPDPVRVVAIGRPVEDLLADP 698

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--------- 732
           E  +    S+  CGGTH+S+T E     +VSE  I  G+RR+ A+T   A+         
Sbjct: 699 ENPNWAKLSTEFCGGTHLSNTKEAEAFALVSEEGIAKGVRRVTALTMGAAKEAIHQSEVF 758

Query: 733 SHLMGQDEKLKSLA-----SFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKR 777
           S  + +  KL+  A     + LK S  NVV           R+ E+ E  RK Q   A  
Sbjct: 759 SSQIDKASKLEGPALEKEVASLKNSLENVVIPAAKKAEFRTRLGELQERIRKAQKAAAGS 818

Query: 778 KLQ 780
            LQ
Sbjct: 819 NLQ 821


>gi|317036398|ref|XP_001398230.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS 513.88]
          Length = 1019

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 293/776 (37%), Positives = 424/776 (54%), Gaps = 82/776 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F++NGH  + SS ++P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 74  VRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFANLKSA 133

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD
Sbjct: 134 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKIYGLD 193

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            RRLY+T +        + D EA  LWK + G+  D I+     DNFW M + GPCGPCS
Sbjct: 194 PRRLYVTYFEGNKEGGLEPDLEAKDLWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 252

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 253 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMGF 308

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +VLQ K++NYD D+F  + Q    VTG + Y G       + I   +RVI DH+R+
Sbjct: 309 ERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVRT 368

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
             F I+DG +P N+GRGYV+RR++RR   YAR     E       ++P +  ++G  +PE
Sbjct: 369 LMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFPE 428

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGL 396
           L + +  + E L  E+  F KTLDRG    +         G D++   DV ++LYDT G 
Sbjct: 429 LRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADV-WRLYDTFGF 487

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID    ++  EE RSRA+  S G    + E +   +        
Sbjct: 488 PVDLTRIMAEERGLQ-ID----DREFEEARSRAKEASRGQKKTSAETVKLDV-------- 534

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSG 508
              +DL +         + +   P  D T       +++ VKAI          +E   G
Sbjct: 535 ---HDLGK--------LEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDG 583

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567
           +++ ++ D+T FYAE GGQ  DTG  + DG   L++ DVQ  A G  +H   ++ G    
Sbjct: 584 EQLGIILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYA-GYVLHTGFMKYGSFSV 642

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             +++   D   R  +  NH+ TH+L+ AL T+LG  V Q GS +  + LRFD +H   I
Sbjct: 643 GDTVICEYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAI 702

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686
           +  +L  IE+   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E G
Sbjct: 703 SDKDLARIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELG 762

Query: 687 GVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            +            S   CGGTHV  TG+I  L ++ E  I  GIRRI A+TG+ A
Sbjct: 763 EILQNVKDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDA 818


>gi|330934785|ref|XP_003304705.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1]
 gi|311318587|gb|EFQ87206.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1]
          Length = 966

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 289/783 (36%), Positives = 425/783 (54%), Gaps = 81/783 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
           + + +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 11  SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLT  
Sbjct: 71  LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130

Query: 118 FDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + +D +RLY+T +      + D EA +LWK + G+  D I+     DNFW M + GPCGP
Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGP 189

Query: 172 CSEIFFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSE+ +D  E   G     +     +    IEIWN VFMQ+ ++  +    LP   IDTG
Sbjct: 190 CSEVHYDLREPEGGKYRNVASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           MG ER+ +VLQ K +NYD D+F  L +  + +TG + Y G       + I   +RV+ DH
Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQDITGAREYRGKFGAEDPDGIDTAYRVVADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R  SF IADG +P N GRGYV+RR++RR   YAR    T+       ++P L  +MG  
Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
           +PE+ + +  I E L  E++ F K+LDRG V+ +     + +   + L GD  ++LYDT+
Sbjct: 370 FPEIKKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL  ID    ++ +++ + +AR  S G              +K  A
Sbjct: 430 GFPVDLTKLMAEERGLK-ID----DKEVDDAQEKAREASKG--------------DKKAA 470

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIV---E 503
              + +D+         D   L   P +  T+         ++S++KAI    + +   +
Sbjct: 471 GALVKFDV--------HDLGALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTK 522

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVER 562
           E   G++  V+ D+T FYAE GGQ  DTG  + DG   + I +VQ  A G  +H   ++ 
Sbjct: 523 EVPEGEQFGVLLDRTNFYAEQGGQEYDTGKLLVDGEAEISIDNVQVYA-GYVLHTGYLKY 581

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G L     ++   D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +
Sbjct: 582 GELSVGSEVIAEFDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFS 641

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---- 677
           H   ++ AEL  +E   +  I ++  V  + +    A    G  A+ G  Y D VR    
Sbjct: 642 HKAGLSDAELDKVESISSKYIKEDAQVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSV 701

Query: 678 -------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                  +  V+ E     S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ 
Sbjct: 702 GVPVEELLADVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQE 761

Query: 731 ARS 733
           A S
Sbjct: 762 AYS 764


>gi|328781428|ref|XP_395392.3| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Apis
           mellifera]
          Length = 1194

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 301/773 (38%), Positives = 429/773 (55%), Gaps = 56/773 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           M     IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P    
Sbjct: 4   MMTAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGIVDPNSDM 63

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
             + +AV + QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ L
Sbjct: 64  AKLVRAVNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICTWAWEFL 122

Query: 115 TKEFDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T +  L   RLY+T +  DE      DEE  ++W  + GLS   ++     DNFW M ET
Sbjct: 123 TVKLKLSSDRLYVTYFGGDEKNNLKPDEECKQIWLSL-GLSPTHVLPGNMKDNFWEMGET 181

Query: 167 GPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           GPCGP SEI +D+ G      L   +++    +EIWNLVF+QF ++N     +LPK  ID
Sbjct: 182 GPCGPSSEIHYDRIGNREAAHL--VNQDDPDVLEIWNLVFIQFNRENDGNLKLLPKKHID 239

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG-------NNI-VNHRVIV 276
            G+GLER+ +++Q K+ NYD DLF  L  A ++ T    Y+G       N I + +RV+ 
Sbjct: 240 CGLGLERLVSIIQNKSANYDTDLFMPLFDAIQKGTKAPSYQGKVGKEDINGIDMAYRVLA 299

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G 
Sbjct: 300 DHARTITIALADGGVPDNTGRGYVLRRILRRAVRYAIEKLNAKPGFFGSLVNVVVDLLGD 359

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PE+ +    I + +  E+ +F KTL RG  LL+  +  L    IL GDVA++LYDT+G
Sbjct: 360 VFPEVTKDPQHIIDIINEEETQFLKTLSRGRNLLNRTIVKLESSNILPGDVAWRLYDTYG 419

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P D+ Q +   +GL  +D+I +    EE +  A+  S        ++I   +   +  T
Sbjct: 420 FPFDLTQLMAEEKGLK-VDVIGY----EEAKKEAQLISQNKSGEVDDQINLDI---HAIT 471

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           +     +   +   K + KV+  K     +     S+I+ A+ +    V+E  SG++V +
Sbjct: 472 ELQNEKIKPTNDIPKYNYKVISNKIYEEYEFAPCFSTII-ALRRAKTFVDEVSSGEEVGI 530

Query: 514 VFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           + DQT FYAE GGQ+ D G    I D    + I +VQ +  G  +H  IV +G L+    
Sbjct: 531 LLDQTNFYAEQGGQIYDEGFLTKIDDEDSEVHIKNVQVRG-GYILHIGIVSQGKLKKNDK 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID   RR L  NH+ATH+L++AL  ILG+ V Q GS + PD LRFD T+   +T+ 
Sbjct: 590 VFSNIDTTRRRLLMSNHTATHVLNYALREILGTEVDQKGSLVAPDRLRFDFTNKGAMTTE 649

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV-----EYE 684
           +++ +E+  N+II +N  V  +  N   A    G  A+    Y D VRVVS+     + E
Sbjct: 650 QIRKVEEITNNIINENKMVYAKECNLGLAKTIQGLRAMFEETYPDPVRVVSIGIPVEDLE 709

Query: 685 DGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              + S AL      CGGTH+  TG I    IVSE +I  GIRRI A+TG  A
Sbjct: 710 KNPLSSDALKTSVEFCGGTHLHYTGHIKNFIIVSEEAIAKGIRRIVALTGPEA 762


>gi|281307084|pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Alasa
 gi|281307085|pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Glysa
 gi|281307086|pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Sersa
 gi|281307087|pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Amppcp
 gi|281307088|pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Amppcp, Ala-Amp And Pcp
          Length = 441

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/441 (53%), Positives = 309/441 (70%), Gaps = 14/441 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 3   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW LLT E  F L
Sbjct: 63  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 361 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 418

Query: 413 IDIISFNQALEEQRSRARAHS 433
           +D   F  A+EEQR RAR  S
Sbjct: 419 VDEAGFEAAMEEQRRRAREAS 439


>gi|238883003|gb|EEQ46641.1| alanyl-tRNA synthetase [Candida albicans WO-1]
          Length = 969

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 326/973 (33%), Positives = 498/973 (51%), Gaps = 109/973 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            S +R+TFL++F+K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 26  ASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASL 85

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK +
Sbjct: 86  KRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKVY 145

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T +  DE        EA   W K+ G+  D I+  +  DNFW M + GPCG
Sbjct: 146 GLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVEDNFWEMGDQGPCG 204

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   S+    +    +E+WN+VF+Q+ ++       LP   IDTG
Sbjct: 205 PCSEIHYDR----IGGRNASALVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTG 260

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDH 278
           MG ER+ ++LQ K +NYD D+F  +     ++TG++       N         +RVI DH
Sbjct: 261 MGFERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADH 320

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL---MMHLLPALCTEMG 334
           +R+ +F I DG +P NEGRGYVLRRI+RR   Y R  + Y  P+      L+  +  +  
Sbjct: 321 VRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNY--PIGGFFQQLVDVVIEQNK 378

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYD 392
             +PE+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYD
Sbjct: 379 EIFPEISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYD 438

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+ + +    GL  ID   F +A EE R  ++      GSGT          K 
Sbjct: 439 TYGFPVDLTRLMAEEAGLK-IDEEGFERAKEESREASK------GSGT----------KD 481

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQK 510
           G T  +  D+   S+  + D      K   +   G+ ++   +V    G    +++    
Sbjct: 482 GKT-LVKLDVHALSELDQND---AIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPS 537

Query: 511 VE--VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567
           ++  ++ D+TPFYAE GGQ  DTG  + DG     + +VQ  A G  +H   +  G L  
Sbjct: 538 IQYGILLDKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYA-GYVLHTGNIVDGKLNV 596

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              ++ T D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +
Sbjct: 597 GDEIIATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAV 656

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           T+ EL+ IE   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+     
Sbjct: 657 TAKELEKIEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVD 716

Query: 682 ----EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--- 732
               +  +   H  S   CGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A    
Sbjct: 717 DLLADPTNTKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQ 776

Query: 733 -------------SHL---MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------ 770
                        S L   + ++ K K L   LK    +V+ + + + E++ KL      
Sbjct: 777 KVANEFEQEIDNASSLPFGVAKESKSKELGVALKKLSISVLDK-QRLTEKFNKLDKSIKD 835

Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                Q    K+ L +    L+  + A    ++H+    ++K +   ++ ++K+ ++  I
Sbjct: 836 NLKAKQKEETKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSI 895

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L+    +K A    V  E ++   NA +LA+  ++ + GG  GG+ ++ Q  G      
Sbjct: 896 YLLTGETDKVAHGCYVSDEAIVKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGI 954

Query: 886 DQAIAGVASFLKK 898
           + AI  V    K+
Sbjct: 955 NTAIEEVTKLFKE 967


>gi|183601533|ref|ZP_02962903.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190968|ref|YP_002968362.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196374|ref|YP_002969929.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183219139|gb|EDT89780.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249360|gb|ACS46300.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250928|gb|ACS47867.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289178710|gb|ADC85956.1| Alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793957|gb|ADG33492.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 899

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 335/925 (36%), Positives = 500/925 (54%), Gaps = 77/925 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   +L +F+K  H ++PS+SLI  N PT +FT +GMVPF     G++ P  + + +
Sbjct: 3   TAEIAQRYLNYFKKQDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSRRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
            QKCVR      D++ VG+T RH TFF+MLGNFSFG YFKE AI  A+DLLT       F
Sbjct: 62  NQKCVRT----LDIEEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTSPREDGGF 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T Y +D+EA  +W+   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWMTTYTDDDEARAMWRN-EGVDPEHIQILGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231
           +G E    G P + E   RYIEIW+LVF  +   N + +  L         +IDTG GLE
Sbjct: 177 RGPEYGKEGGPIADES--RYIEIWDLVFENYMVDNVKSKTDLHIAGELKHKNIDTGAGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ K N Y+ D    +I+A+E++TG+KY  N    V  RV+ DH+RS+  +++DG
Sbjct: 235 RLAYLLQGKNNIYETDEVYPVIEAAEKITGIKYGENKEADVRMRVVADHVRSALMIMSDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N GRGYVLRR++RR +   R+LG T+P+M  LLP     M   YPEL      + E
Sbjct: 295 VRPSNAGRGYVLRRLIRRTIEAMRVLGVTDPVMPQLLPVSEQAMEPNYPELANTFHDVSE 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL------GKDE---ILNGDVAFKLYDTHGLPLDI 400
               E++ F +TL  GL + D  ++         K E   +++GD AF L+DT+G P+++
Sbjct: 355 AAYGEEDAFRRTLTNGLEIFDMAVAKAKSTAEEAKGETTPVVSGDAAFTLHDTYGFPIEL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIG 459
             ++   +G+  +D   F + + EQ+SRAR  +L          +   K K +   +F+G
Sbjct: 415 TLEMAQEQGVK-VDEAKFRELMNEQKSRARQDALKKRHNVDLSEYDDFKNKLHQPIEFLG 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQT 518
           Y  +                          S V  I+ +G     AVS    VEV+ D+T
Sbjct: 474 YTEV-----------------------STRSRVLGIMLEGVGSVPAVSAPATVEVILDRT 510

Query: 519 PFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           PFYAEAGGQL D G  I D G  L++ DVQK  + + V    +  G L        TID 
Sbjct: 511 PFYAEAGGQLADQGEIISDDGAVLEVDDVQKPIKDLIVQQCRLIEGTLVVGAEATATIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R  ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   T   + ++E 
Sbjct: 571 ERRGAIARSHTATHIVHKALREELGPQATQRGSEDAPNRLRFDFQWSTAPTKELMSAVEA 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VND +  NL V T  M  +DAIA GA  L G KY D VRVV++  +DG   S  LCGGT
Sbjct: 631 RVNDRLRDNLHVSTEEMKFDDAIALGAMHLFGEKYGDVVRVVTIG-DDG--WSRELCGGT 687

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV   G+I  + I+SE+S+ +G+RR++A+ GQ A      +   +  L+  L      + 
Sbjct: 688 HVDFAGKIGQVNILSEASVGSGVRRVDALVGQSAYDFNAREHALVSQLSDTLNARPDELA 747

Query: 758 GRVE----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL- 809
            R+     ++ +  R+L  ++ + +L  +V +L   + +  A V  +S  +    S ++ 
Sbjct: 748 DRINTLLAKLKDSDRRLASMY-EAQLASSVPELVEAAANSTAPVVVVSKNVGHFGSFDVL 806

Query: 810 -KSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLG 864
            K+VMD   +    +  I+ L G++++ K  V+ V T +   +    A DL R ++K+L 
Sbjct: 807 RKTVMDIRGRLGDDKPVIVALAGVNEDDK-PVIAVATNEAARKAGVKAGDLVRGASKML- 864

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAI 889
           GGGGGG+P  AQ GG + +K D A+
Sbjct: 865 GGGGGGKPDFAQGGGADASKIDAAL 889


>gi|330752142|emb|CBL87102.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 834

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 308/878 (35%), Positives = 479/878 (54%), Gaps = 93/878 (10%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MF N+GM PFK+IF G +K     V   QKC+R  GKHNDL+ VG    HHT FEMLGN+
Sbjct: 1   MFVNAGMNPFKDIFIGSKKSENGRVANTQKCLRVSGKHNDLEEVGHDTYHHTLFEMLGNW 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSA 148
           SFG YFKE AI  AW+LLT+ + LD+ R+YITV++         D ++ K W K   + +
Sbjct: 61  SFGDYFKEEAIDWAWELLTEVYGLDENRIYITVFEGDLSDGLKRDIDSEKAWLK--HVQS 118

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLV 204
            +I+  +  DNFW M E GPCGPCSEI FD + E     + G+   +E+  + IE+WNLV
Sbjct: 119 SRILSGSKKDNFWEMGEVGPCGPCSEIHFDLRNEAERKKIDGALLVNEDHPQVIELWNLV 178

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           F++F++ +      LP   +DTGMGLER+   +  K +NYD D+F   I     ++  +Y
Sbjct: 179 FIEFQRVSDGNLSPLPDKHVDTGMGLERLVRAIGMKESNYDTDIFTPYINKLSDLSNKEY 238

Query: 265 EGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPL 321
             +  V+   RVI DH+R+ S  IADG LP+N G GYV+RRI+RRA+ Y    LG+ +P 
Sbjct: 239 GTDETVDISFRVISDHIRAVSMAIADGQLPSNIGAGYVIRRILRRAVRYGYSNLGFRKPF 298

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
           ++ LLP L + +   +PEL     ++   +R E+  F +TL+ GL  LD  +S   K+ I
Sbjct: 299 LIDLLPVLSSSLSKTFPELEIQISMVTAVIREEELSFLRTLESGLKRLDDAISE-SKNAI 357

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G  AF+LYDT+G PLD+ + ++C+     +D   F+  ++ Q+ R+R       S ++
Sbjct: 358 ISGIRAFELYDTYGFPLDLTK-LICSEKRYNVDEDQFHLEMKNQKDRSR-------SASS 409

Query: 442 EKI--WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
           +K+  W  +    G  +FIG++                           +S    +++  
Sbjct: 410 KKVGDWIEMSSGRG-DEFIGFE--------------------------ANSSKSKLIRYR 442

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            I  E+  G+ ++V+   TPFY E GGQ+GD G    +G  + + +  K+  G+ +HH  
Sbjct: 443 HI--ESSKGKSIQVLIAPTPFYPEGGGQVGDIGIIKFEGQEINVKETTKET-GMIIHHLY 499

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E  +     ++   ++ +NR ++S NHSATHL+H+AL  ILGSHV Q GS +  +G RF
Sbjct: 500 DEPKVWSK--NVFAQVNMKNRERVSENHSATHLVHYALRKILGSHVEQRGSLVHAEGFRF 557

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKYNDRV 676
           D +H + +++A++ SIE  V  +I   +   T+I N      A   GA AL G KY D V
Sbjct: 558 DFSHFQKVSNAQINSIESLVRSLITDKIK--TQIHNEIPINSAKKMGAMALFGEKYGDFV 615

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV          S  LCGGTHV  T  I+   I SES + AGIRRIEA++G  A  +L+
Sbjct: 616 RVVQFG------ESVELCGGTHVEDTSNILTFIIKSESGVAAGIRRIEALSGAAAIDYLL 669

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDL------ 786
            + ++       L + + N V   E+I  +  K+Q++  ++KL    Q+ V +L      
Sbjct: 670 DKSKRYD-----LALKESNQVDPEEKI--KSLKVQVLGIEKKLISFNQMRVSNLKSELIK 722

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S      +  ++ II +++S  +K ++  ++    + +++L+ +  + +  + + V  D 
Sbjct: 723 SSKDYGTLKVVAEII-DLESSYVKDLVFLIKDNYPTAVVLLLSVIGD-RVQMHLGVGSDS 780

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG--PNG 882
               NA +  +    +   GGGGG+P  A SGG  P+G
Sbjct: 781 TPHVNAGNWVK-ELSLFIKGGGGGQPSYASSGGKFPDG 817


>gi|224064089|ref|XP_002186563.1| PREDICTED: alanyl-tRNA synthetase [Taeniopygia guttata]
          Length = 968

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 308/857 (35%), Positives = 460/857 (53%), Gaps = 90/857 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFRENKHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA +LLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALELLTKE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W  + GL+  +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPCSEI +D+ G+     L   +++    +EIWNLVF+QF ++       LPK SIDTGM
Sbjct: 185 GPCSEIHYDRIGDRDASHL--VNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNI-VNHRVIVDHL 279
           GLER+ +VLQ K +NYD DLF    +A ++ TG +         + + I + +RV+ DH 
Sbjct: 243 GLERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYLGQVGAEDADGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+P
Sbjct: 303 RTITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +   ++++ +  E+++F KTL RG  +LD  +  LG  +++ GD A+ LYDT+G P 
Sbjct: 363 ELKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSLGDSKVIPGDTAWLLYDTYGFPA 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   I   +GL  +D+  F    EE+R  A+  S G G+G  +               +
Sbjct: 423 DLTGLIAEEKGLV-VDMEGF----EEERKNAQLKSQGKGAGGED--------------LL 463

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQ 509
             D+    +   +  +V    P  +  + +S         + VKAI ++ + VEE  +GQ
Sbjct: 464 MLDIYAIEELRAQGLEVTDDSPKYNYASDLSGTYDFGSLVATVKAIRREKKFVEEVSTGQ 523

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERG 563
           +  +V D+T FYAE GGQ+ D G  + D           + +VQ +  G +V H     G
Sbjct: 524 ECGIVLDRTCFYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVR--GGYVLHIGTLYG 581

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+    + LTID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T 
Sbjct: 582 SLKVGDQVHLTIDEARRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTA 640

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV- 681
              +++ E+K +E   N +I ++  V  +     +A A  G  A+    Y D VRVVS+ 
Sbjct: 641 KGALSTQEIKKVEGIANQMIEESKTVYAKDCPLAEAKAIQGLRAVFDETYPDPVRVVSIG 700

Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                         G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A
Sbjct: 701 IPVEELLADPSGPGGSITSIEFCGGTHLQNSSHAGSFVIVSEEAIAKGIRRIVAVTGAEA 760

Query: 732 RSHLMGQD---EKLKSLASFLKVSQG---NVVGRVEEIWE--------EYRKLQLIHAKR 777
           R  L   D   + L +L + +KV      +V   + ++ E        +++K +L  A +
Sbjct: 761 RKALRKVDSLRKLLSALEAKVKVQTAPNKDVQKEITDLGETLATAIIPQWQKDELREAVK 820

Query: 778 KLQLNVEDLSCHKIADV 794
            L+  ++DL     AD+
Sbjct: 821 ALKKVMDDLDRASKADI 837


>gi|149640710|ref|XP_001506284.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 2
           [Ornithorhynchus anatinus]
          Length = 963

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 304/802 (37%), Positives = 433/802 (53%), Gaps = 79/802 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        D D E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+QF ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG + Y G    +        +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  ++     L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS-------SIVKAIVQQGEIVEEAVSGQ 509
               DL           +V    P  +     S       S VKA+ ++   V+E  +GQ
Sbjct: 473 LRARDL-----------EVTDDSPKYNYRANASGSYGRFPSTVKALRREKTFVDEVSTGQ 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +  VV D+T FYAE GGQ+ D G  + D        + +VQ +  G +V H     G L+
Sbjct: 522 ECGVVLDKTCFYAEQGGQIFDEGYLVKDDDGSEDFTVKNVQVR--GGYVLHIGTVYGNLK 579

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    
Sbjct: 580 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGA 638

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--- 682
           +++ E+K  E+  N +I    PV  +      A A  G  A+    Y D VRVVS+    
Sbjct: 639 MSTQEIKKTEEIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 698

Query: 683 ---YED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
               ED     G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+  
Sbjct: 699 AELLEDPSSPAGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKA 758

Query: 735 LMGQDEKLKSLASFLKVSQGNV 756
           L     K +SL + L V +  V
Sbjct: 759 L----RKAESLKTALSVLEAKV 776


>gi|150864558|ref|XP_001383420.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
 gi|149385814|gb|ABN65391.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
          Length = 954

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 316/928 (34%), Positives = 477/928 (51%), Gaps = 100/928 (10%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            S +R+TFL++F  K  H+ +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 11  ASKVRSTFLDYFTNKRDHKFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTADPASDLAS 70

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK  AI  AW+LLT+ 
Sbjct: 71  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKPEAITWAWELLTEV 130

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD+ RLY+T ++ D         EA   W K+ G++ D I+     DNFW M + GPC
Sbjct: 131 YGLDKDRLYVTYFEGDAKQGLEPDLEAKSFWLKV-GVAEDHILPGNAKDNFWEMGDQGPC 189

Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +S   ++    +E+WN+VF+Q+ ++       LP   IDT
Sbjct: 190 GPCSEIHYDR----IGGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKTLPAKHIDT 245

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMG ER+ +VLQ+K++NYD D+F  +      +TG++  G              +RVI D
Sbjct: 246 GMGFERLVSVLQDKSSNYDTDVFLPIFDKIRDITGIRPYGGKFGAEDTDGIDTAYRVIAD 305

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGS 335
           H+R+ +F I DG +P N+G GYVLRRI+RR   Y R  + Y        L+  +  +   
Sbjct: 306 HVRTLTFAICDGGVPNNDGAGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKE 365

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393
            +PE++     ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT
Sbjct: 366 IFPEIVHGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDT 425

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P D+ + +    GL  ID  +F +A  E +  ++A     G    +    SL E   
Sbjct: 426 YGFPSDLTRLMAEEAGLK-IDEPAFEKARLESKEASKAIGNKDGVELVKLDVHSLSELDS 484

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG-VSSIVKAIVQQGEIVEEAVSGQKVE 512
                  D    +K+ +E+ K   Q   I  ++G V SI  + VQ G             
Sbjct: 485 NANVSKTD--DSAKYGRENIKATIQ--AIYSSSGFVDSIDDSSVQYG------------- 527

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+TPFYAE GGQ+ DTG  + DG     +T+VQ    G  +H   +  G L  +  +
Sbjct: 528 VLLDKTPFYAEQGGQIYDTGKLVIDGKAEFNVTNVQVYG-GYVLHTGNIVEGSLNVKDDV 586

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + T D   R  +  NH+ TH+L++AL  +LG  V Q GS + P+ LRFD +H + +T  E
Sbjct: 587 IATYDELRRWPIRNNHTGTHVLNYALREVLGDSVDQRGSLVAPEKLRFDFSHKQALTPKE 646

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681
           L ++E   N+ I  N  V  + ++  +A   +G  A+ G  Y D VRVVS+         
Sbjct: 647 LAAVESISNEYIKSNKEVFYKDVSLNEAREINGLRAVFGETYPDPVRVVSIGVPVEDLLA 706

Query: 682 EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------ 733
           E +    H  S   CGGTHV+ TG+I  L ++ ES I  GIRRI A+TG  A +      
Sbjct: 707 EPKKADWHKVSIEFCGGTHVAKTGDIKDLVVIEESGIAKGIRRIVAVTGHDAHAVQKIAS 766

Query: 734 -------HLMG------QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------- 770
                  H  G      ++ K K L   LK    +V+ + +++ E++ K+          
Sbjct: 767 EFEAELDHAAGLPFGSVKETKAKELGVALKKLSISVLDK-QKLTEKFNKIDKSIKDDLKT 825

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            Q    K+ L +  E L      D   ++H+    ++K +    + L+K  +   + L+ 
Sbjct: 826 KQKAETKQTLDVVNEWLEKKDAGDY-LVAHVPINANAKAITEAFNLLKKSHKDKSLYLIT 884

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              +K A    +  E +    NA DLA+
Sbjct: 885 GLTDKVAHGCYIADEAIAKGVNASDLAQ 912


>gi|115490933|ref|XP_001210094.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624]
 gi|114196954|gb|EAU38654.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624]
          Length = 968

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 293/778 (37%), Positives = 420/778 (53%), Gaps = 79/778 (10%)

Query: 7   IRTTFLEFFQKNGH---------ELLPS---SSLIPCNDPTLMFTNSGMVPFKNIFTGQE 54
           +R TFL++F+KNGH          +LPS   S ++P  DPTL+FTN+GM  FK+IF G  
Sbjct: 16  VRDTFLDYFKKNGHTFGIATVARSILPSFASSPVVPLADPTLLFTNAGMNQFKSIFLGTV 75

Query: 55  KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
            P     T    C+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ +W+LL
Sbjct: 76  DPNSDFATLKSACIRAGGKHNDLDDVGKDGYHHTFFEMLGNWSFGDYFKKEAIRYSWELL 135

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T  + LD +RLY+T +        + D EA +LWK + G+  D I+     DNFW M + 
Sbjct: 136 TTVYGLDPQRLYVTYFEGHKEGGLEPDLEAKELWKAV-GVPDDHILPGNMKDNFWEMGDQ 194

Query: 167 GPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           GPCGPCSE+ +D+     GG   +   + +    +EIWN VF+Q+ ++  +    LP   
Sbjct: 195 GPCGPCSEVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNREADRSLRPLPNKH 250

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRV 274
           IDTG+G ER+ ++LQ+K++NYD D+F  L  A   +TG + Y+G    +        +RV
Sbjct: 251 IDTGLGFERLVSILQDKSSNYDTDVFTPLFDAIRDITGAREYQGRFGADDVDGIDTAYRV 310

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTE 332
           + DH+R+  F I+DG++P N+GRGYV+RR++RR   YAR     E       L+P +  +
Sbjct: 311 VADHIRTLMFAISDGVMPNNDGRGYVIRRVLRRGARYARKYFQVEIGSFFSKLVPTVVDQ 370

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKL 390
           +G  +PEL + +  + E L  E+  F KTLDRG    +     S    D+ L+G   ++L
Sbjct: 371 LGDMFPELKKKQHDVMEILDEEEISFSKTLDRGERQFEQYAQKSKTKGDDKLHGADVWRL 430

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           YDT G P+D+ + +   RGL  ID + F    EE R RA+  S G              +
Sbjct: 431 YDTFGFPVDLTRLMAEERGLR-IDDLEF----EEARLRAKEASKG--------------Q 471

Query: 451 KYGATQFIGYDLLRGSKFMK-EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAV 506
           K  A   +  D+    K  K ED             N +++ VKAI           E  
Sbjct: 472 KKAAADAVKLDVHDLGKLEKMEDVHKTDDSAKFGREN-ITAQVKAIYHGKSFCTSTSEIT 530

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
           +G+++ ++ D+T FYAE GGQ  DTG  + DG   L++ DVQ    G  +H   ++ G  
Sbjct: 531 AGEQLGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYG-GYVLHTGFMKYGSF 589

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H  
Sbjct: 590 SVGDSVICEYDELRRWPIRNNHTGTHILNFALREVLGDGIEQKGSLVAAEKLRFDFSHKS 649

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684
           P+T AEL+ +ED   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E
Sbjct: 650 PLTDAELQKVEDISTEYIRQNCAVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVE 709

Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              +            S   CGGTHV  TG+I  L ++ ES I  GIRRI A+TG+ A
Sbjct: 710 LEEILKNVSDPRWEKVSIEFCGGTHVQKTGDIKDLVVLEESGIAKGIRRIIAVTGEEA 767


>gi|328772364|gb|EGF82402.1| hypothetical protein BATDEDRAFT_32863 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 965

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 344/987 (34%), Positives = 507/987 (51%), Gaps = 123/987 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
           +S +R TF+++F+++GH  + SSS IP  DPTLMF NSGM  FK IF G   P      +
Sbjct: 7   LSKVRKTFIDYFEQHGHTHVVSSSTIPHGDPTLMFANSGMNQFKPIFLGTVDPNSDLARL 66

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +A  + QKC+RAGGKHNDL++VGR   HHTFFEMLGN+SFG YFK  AI++AW++LTK 
Sbjct: 67  SRAANS-QKCIRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGNYFKTEAIEMAWEILTKV 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLYIT +        + D EA  LW+ I G+  D II  +  DNFW M + GPC
Sbjct: 126 YGLPKDRLYITYFGGDKSLGLESDIEAKHLWRNI-GVEEDHIIPGSVKDNFWEMGDQGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI FD+     GG   +   + +    +EIWNLVFMQ+ ++  +   +LP   IDT
Sbjct: 185 GPCSEIHFDR----IGGRNAADLVNMDDPDVLEIWNLVFMQYNREVDRSLKLLPNKHIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277
           GMGLER+ ++LQ+K +NYD D+F  +  A +++TG++ Y+G       + I   +RVI D
Sbjct: 241 GMGLERLVSILQDKRSNYDTDVFTGIFSAIQKLTGVREYQGRLGEADQDGIDTAYRVIAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334
           H+R+ +F I+DG +P+NEGRGYVLRRI+RR   YAR   +  P+      L+  + TEMG
Sbjct: 301 HVRTLTFAISDGGVPSNEGRGYVLRRILRRGARYAR-KKFNVPIGCFFSSLVDTVVTEMG 359

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYD 392
            A+PE+ +    ++E L  E+  F KTLDRG  L    L+       ++++G  A++LYD
Sbjct: 360 DAFPEITERVDDLKEILDEEERSFSKTLDRGERLFGEYLAKTKASGGKVISGADAWRLYD 419

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLK 449
           T+G P+D+ + +    GL  +D + F Q  +  + R+R        G  EK   I  SL 
Sbjct: 420 TYGFPVDLTRLMAEENGLT-VDEVEFEQEQKIAKERSR--------GRNEKETGIVVSLD 470

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
                   IG +L         D +    K   D    +SS VKA+   G+ VE   S  
Sbjct: 471 -----IHAIG-ELEANPNVQPTDDQY---KYGFD---DISSKVKALFVNGKFVESVSSTN 518

Query: 510 ---KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
              +  V+ D+T FYAE GGQ  DTG    DG +   I DVQ    G  +H   ++ G L
Sbjct: 519 HQGRFGVILDKTNFYAEQGGQQFDTGSLTVDGSLEFAIEDVQVFG-GYVLHIGYLKYGSL 577

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD----- 620
             + S++ T D   R  L  NH+ATH+L++ L +++G+ V Q GS ++P+ LRFD     
Sbjct: 578 SLDDSIMCTYDELRRWPLRNNHTATHVLNYGLRSVIGTIVDQKGSLVSPEKLRFDYSCKV 637

Query: 621 --------VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671
                    +  K   +AEL  +E   N  IA+N  + T  ++   A + +G  A+ G  
Sbjct: 638 NKCFEYNIYSRRKIGLTAELAKVEKITNSFIAKNDIIYTSEVSLALAKSINGLRAVFGEV 697

Query: 672 YNDRVRVVSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D VRVVS+ +                 S   CGGTHV  TG+I    I+ +S++  GI
Sbjct: 698 YPDPVRVVSIGFPIDEMLKDPSNAKWAETSIEFCGGTHVQRTGDIKRFVIIEDSALAKGI 757

Query: 721 RRIEAITGQRARSHLMGQD------EKLKSLASFLKVSQGNVVGRV--EEIWEEYRKLQL 772
           RRI  +TG  A  +    D      E+L+ +   L  +    +G+     +    RK  L
Sbjct: 758 RRIVGVTGDEALKYQKLADEFEIKLEQLRRIKGALFETTLKEIGKTLDSSVLPVLRKHSL 817

Query: 773 --------------IHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVM 813
                           A++ L+      +     + N     F+S I    ++K L   +
Sbjct: 818 KETFSAIKKDFDDKDKARKALESKEAVDTVKSFFEANPEKTVFVSVINQSGNTKALAQAI 877

Query: 814 DALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
            A  + ++    ML+ +  E  K +   +V + L+DR   A + A   A  +GG  GG  
Sbjct: 878 -AHVRTLKDKAAMLIAVDPETSKVAHQCIVPQILIDRGLKATEWADAVASKVGGKKGGSE 936

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
              AQ  G       +A+    +F+ K
Sbjct: 937 S-AAQGAGDRAASVQEAVDAATAFIAK 962


>gi|68475751|ref|XP_718082.1| hypothetical protein CaO19.5746 [Candida albicans SC5314]
 gi|68475886|ref|XP_718016.1| hypothetical protein CaO19.13169 [Candida albicans SC5314]
 gi|74586350|sp|Q5A8K2|SYA_CANAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
 gi|46439761|gb|EAK99075.1| hypothetical protein CaO19.13169 [Candida albicans SC5314]
 gi|46439836|gb|EAK99149.1| hypothetical protein CaO19.5746 [Candida albicans SC5314]
          Length = 969

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 326/973 (33%), Positives = 497/973 (51%), Gaps = 109/973 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            S +R+TFL++F+K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 26  ASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASL 85

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK +
Sbjct: 86  KRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKVY 145

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T +  DE        EA   W K+ G+  D I+  +  DNFW M + GPCG
Sbjct: 146 GLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVEDNFWEMGDQGPCG 204

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   S+    +    +E+WN+VF+Q+ ++       LP   IDTG
Sbjct: 205 PCSEIHYDR----IGGRNASALVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTG 260

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDH 278
           MG ER+ ++LQ K +NYD D+F  +     ++TG++       N         +RVI DH
Sbjct: 261 MGFERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADH 320

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL---MMHLLPALCTEMG 334
           +R+ +F I DG +P NEGRGYVLRRI+RR   Y R  + Y  P+      L+  +  +  
Sbjct: 321 VRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNY--PIGGFFQQLVDVVIEQNK 378

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYD 392
             +PE+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYD
Sbjct: 379 EIFPEISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYD 438

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+ + +    GL  ID   F +A EE R  ++      GSGT          K 
Sbjct: 439 TYGFPVDLTRLMAEEAGLK-IDEEGFERAKEESREASK------GSGT----------KD 481

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQK 510
           G T  +  D+   S+  + D      K   +   G+ ++   +V    G    +++    
Sbjct: 482 GKT-LVKLDVHALSELDQND---AIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPS 537

Query: 511 VE--VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567
           ++  ++ D+TPFYAE GGQ  DTG  + DG     + +VQ  A G  +H   +  G L  
Sbjct: 538 IQYGILLDKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYA-GYVLHTGNIVDGKLNV 596

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              ++ T D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +
Sbjct: 597 GDEIIATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAV 656

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           T+ EL+ IE   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+     
Sbjct: 657 TAKELEKIEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVD 716

Query: 682 ----EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--- 732
               +  +   H  S   CGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A    
Sbjct: 717 DLLADPTNTKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQ 776

Query: 733 -------------SHL---MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------ 770
                        S L   + ++ K K L   LK    +V+ + + + E++ KL      
Sbjct: 777 KVANEFEQEIDNASSLPFGVAKESKSKELGVALKKLSISVLDK-QRLTEKFNKLDKSIKD 835

Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                Q    K+ L +    L+  + A    ++H+    ++K +   ++ ++K+ ++  I
Sbjct: 836 NLKAKQKEETKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSI 895

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L+    +K A    V  E +    NA +LA+  ++ + GG  GG+ ++ Q  G      
Sbjct: 896 YLLTGETDKVAHGCYVSDEAIAKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGI 954

Query: 886 DQAIAGVASFLKK 898
           + AI  V    K+
Sbjct: 955 NTAIEEVTKLFKE 967


>gi|421855|pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana  (fragment)
          Length = 989

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P      + +A
Sbjct: 50  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 109

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 110 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 168

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC
Sbjct: 169 PTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 226

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D+ G      L  + +     +EIWNLVF+QF +++      LP   +DTGMG E
Sbjct: 227 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 284

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+ +VLQ K +NYD D+F  +    ++ TG +     +         + +RV+ DH+R+ 
Sbjct: 285 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 344

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+ ++   MG  + EL 
Sbjct: 345 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 404

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + +  I + ++ E+  F KTL +G+         + +   L+GD AF L+DT+G PLD+ 
Sbjct: 405 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 463

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   RGL  +D+  FN+A+EE R R+R                S + K          
Sbjct: 464 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 499

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512
              G+  M  D      K  +  T+            S +KAI      +E + +   V 
Sbjct: 500 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 556

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569
           +V   T FYAE GGQ+ DTG   G      + +VQ    G FV H      E G +    
Sbjct: 557 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 614

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +DY+ R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+  
Sbjct: 615 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 674

Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
            +L+ IE  VN  I   L V ++  +++    I  G  A+ G  Y D VRVVS+      
Sbjct: 675 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEAYPDPVRVVSIGRKVED 733

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 734 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 788


>gi|71022301|ref|XP_761380.1| hypothetical protein UM05233.1 [Ustilago maydis 521]
 gi|46097613|gb|EAK82846.1| hypothetical protein UM05233.1 [Ustilago maydis 521]
          Length = 990

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 292/778 (37%), Positives = 426/778 (54%), Gaps = 78/778 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
            + +R TF  +FQ+  H  +PSSS IP +DPTL+F N+GM  +K IF G   P      +
Sbjct: 24  ATKVRDTFTGYFQERKHTFVPSSSTIPYDDPTLLFANAGMNQYKPIFLGIADPNSSFGSM 83

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI++AW+LLTK 
Sbjct: 84  KRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEMAWELLTKV 142

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T ++ D         EA  LW K+ G+  D I+     DNFW M  TGPC
Sbjct: 143 YGLPKDRLYVTYFEGDAKQGLEPDLEARDLWLKV-GVDEDHILTGDAKDNFWEMGATGPC 201

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    IEIWN VFMQF +++      LP   IDT
Sbjct: 202 GPCSEIHYDR----IGGRNAADLVNKDDPNVIEIWNNVFMQFNREDDGSLRPLPAKHIDT 257

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277
           GMG ER+ ++LQ+K +NYD D+F  +    +Q+TG + Y G       + I   +RV+ D
Sbjct: 258 GMGFERLVSILQDKPSNYDTDVFTPIFNKIQQLTGARAYTGKLGAEDKDGIDTAYRVVAD 317

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334
           H+R+ +F I+DG +P  +GRGYVLRRI+RR   Y R   +  P+      L+P L  +MG
Sbjct: 318 HVRTLTFAISDGGVPDRDGRGYVLRRILRRGTRYVRKY-FQVPIGSFFSQLVPTLVEQMG 376

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYD 392
             +PE+ +    ++  L  E+  F +TLDRG  L +   +      ++ L+G+  +KLYD
Sbjct: 377 HFFPEITKKVDDVKAILDEEEASFARTLDRGERLFEEYAAKAKAAGNKQLSGNDVWKLYD 436

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T G P+D+   +   +GL G++   F  A  E +  ++A   G   G TE + F + +  
Sbjct: 437 TFGFPVDLTLIMAEEQGL-GVNEKEFEAAQAESKEISKA---GGKKGETEAVKFDVHD-- 490

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI---VKAIVQQGEIVEEAVS-- 507
                +G+        +++D  V   K   D   GV+++   VKAI Q    V+      
Sbjct: 491 -----LGH--------LEKDSSV--PKTQDDFKYGVNTVKASVKAIYQDHAFVDNTSKIG 535

Query: 508 --GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
              +   ++ D+T  YAE+GGQ  DTG  + DG    + +  +   G  +H   ++ G L
Sbjct: 536 DRAKNFGILLDRTCLYAESGGQQADTGSIVIDGKTEFVVEDAQVFSGYVLHIGHLKHGEL 595

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +V++ D   R  L  NH+ATH+L+  L  +LG H+ Q GS + P  LRFD +H +
Sbjct: 596 GLNDEVVVSYDQSRRGPLQSNHTATHILNFGLREVLGDHIDQKGSLVAPTKLRFDFSHKQ 655

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684
            +   ELK IED   D I +++ V ++ M  + A    G  A+ G  Y + VRVV++EY+
Sbjct: 656 GVNVQELKKIEDISIDWIKRDVGVYSKEMPLDTAQKIPGLRAVFGEAYPNPVRVVTLEYD 715

Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              +            S   CGGTHV+ TGEI    I  ES I  GIRRI A+TG  A
Sbjct: 716 LDTIADDIENTKWRGTSVEFCGGTHVAKTGEIGEFVITEESGIAKGIRRIIAVTGNEA 773


>gi|1673366|emb|CAA80381.1| cytosolic tRNA-Ala synthetase [Arabidopsis thaliana]
          Length = 955

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P      + +A
Sbjct: 16  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 76  CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC
Sbjct: 135 PTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D+ G      L  + +     +EIWNLVF+QF +++      LP   +DTGMG E
Sbjct: 193 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+ +VLQ K +NYD D+F  +    ++ TG +     +         + +RV+ DH+R+ 
Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 310

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+ ++   MG  + EL 
Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 370

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + +  I + ++ E+  F KTL +G+         + +   L+GD AF L+DT+G PLD+ 
Sbjct: 371 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 429

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   RGL  +D+  FN+A+EE R R+R                S + K          
Sbjct: 430 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 465

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512
              G+  M  D      K  +  T+            S +KAI      +E + +   V 
Sbjct: 466 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 522

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569
           +V   T FYAE GGQ+ DTG   G      + +VQ    G FV H      E G +    
Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 580

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +DY+ R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+  
Sbjct: 581 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 640

Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
            +L+ IE  VN  I   L V ++  +++    I  G  A+ G  Y D VRVVS+      
Sbjct: 641 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEAYPDPVRVVSIGRKVED 699

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 700 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754


>gi|146421805|ref|XP_001486846.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146387967|gb|EDK36125.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 964

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 324/970 (33%), Positives = 503/970 (51%), Gaps = 104/970 (10%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
            S +R+TFL++F +K+GH+ +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 22  ASKVRSTFLDYFKEKHGHQFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASEMST 81

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI+ AW+LLT  
Sbjct: 82  WKRAVNSQKCIRAGGKHNDLEDVGQDSYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTDV 141

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++ DE        EA + W    G++ D I+     DNFW M + GPC
Sbjct: 142 YKLDPDRLYVTYFEGDEKLGLGPDLEAKQFWLD-RGVAEDHILTGDAKDNFWEMGDQGPC 200

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPCSEI +D+ G      L    +     +EIWNLVFMQ+ ++       LP   IDTG+
Sbjct: 201 GPCSEIHYDRIGNRNAAHLVNMDD--PNVLEIWNLVFMQYNREPDSSLRPLPAKHIDTGL 258

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHL 279
           G ER+ ++LQ+K++NYD D+F+ +     +++G++ Y G       + I   +RVI DH+
Sbjct: 259 GFERLVSILQQKSSNYDTDVFQPIFDKIREISGVRPYTGKFGSEDKDGIDTAYRVIADHV 318

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR--LLGYTEPLMMHLLPALCTEMGSAY 337
           R+ +F I DG +P NEGRGYVLRRI+RR   Y R  L          L+P +  +    +
Sbjct: 319 RTLTFAITDGGVPNNEGRGYVLRRILRRGARYVRKYLNCPIGSFFQQLVPVVIEQNSEIF 378

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHG 395
           PE+++    ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G
Sbjct: 379 PEILRNMQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYG 438

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL  ID        EE   +AR  S      ++ K         G++
Sbjct: 439 FPVDLTRLMAAEAGLK-ID--------EEGFEKARLESWEASKASSNK---------GSS 480

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVS--GQKV 511
           Q +  D+   S+    D      K       G+  +   +V    G    ++VS  GQ+V
Sbjct: 481 QLVKLDVHALSEL---DSNANIPKTNDSYKYGLDDVKAEVVGIYDGSSFVDSVSEVGQQV 537

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ  D G  + DG    ++ +VQ    G  +H   +  G L+ +  
Sbjct: 538 GILLDKTSFYAEQGGQEYDKGKIVIDGSAEFEVDNVQVYG-GYVLHTGSIVYGTLKVKDE 596

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +T A
Sbjct: 597 VLACYDELRRWPIRNNHTGTHVLNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQGLTPA 656

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------V 678
           EL  +E   N  I+ N  V  + +   DA   +G  A+ G  Y D VR           +
Sbjct: 657 ELTKVEAISNKYISDNKEVFAKDVPLADAQQINGLRAVFGETYPDPVRVVSVGVPVEDLL 716

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMG 737
              + ++    S   CGGTHV+ TGEI  L I+ ES I  GIRRI A+TG  A R   + 
Sbjct: 717 KDPKRDEWHQVSVEFCGGTHVAKTGEIKDLVIIEESGIAKGIRRIVAVTGTEAHRVQKLA 776

Query: 738 QD------------------EKLKSLASFLKVSQGNVVGRV----------EEIWEEYRK 769
           +D                  +K K L   +K    +V+ +           + I ++ + 
Sbjct: 777 KDYDSQLSEAEAMPFGSSKEQKTKELGVAIKKLSISVLDKQMLNTKFTKLDKSIKDQLKA 836

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            Q   +K+ L+     L+    +D  F+SHI    ++K +   ++ ++K+  S  I L  
Sbjct: 837 KQKEESKKVLEAVNNWLTSEDSSDY-FVSHIDISANAKAITDAINLIKKEHNSKTIYLFA 895

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S   K +    V++D + +  N+ DLA L++  + GG  GG+ ++ Q  G   +  ++A
Sbjct: 896 GS--DKVAHGCYVSDDAISKGVNSNDLAALASTSI-GGKAGGKGNVVQGMGDKPSGIEKA 952

Query: 889 IAGVASFLKK 898
           +  + + L K
Sbjct: 953 VEDITAALSK 962


>gi|281307089|pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307090|pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307091|pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307092|pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307093|pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Glysa
 gi|281307094|pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Glysa
 gi|281307095|pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Sersa
 gi|281307096|pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Sersa
          Length = 441

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/441 (53%), Positives = 308/441 (69%), Gaps = 14/441 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 3   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW LLT E  F L
Sbjct: 63  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DT MGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L+
Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R +  
Sbjct: 361 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 418

Query: 413 IDIISFNQALEEQRSRARAHS 433
           +D   F  A+EEQR RAR  S
Sbjct: 419 VDEAGFEAAMEEQRRRAREAS 439


>gi|50954761|ref|YP_062049.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|59798521|sp|Q6AFA1|SYA_LEIXX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50951243|gb|AAT88944.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 885

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 297/771 (38%), Positives = 426/771 (55%), Gaps = 58/771 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I   +L+FF + GH ++PS+SL+  +DP+L+FT +GMVPF    TG     +   T
Sbjct: 2   QTAEIHRRWLDFFARRGHTVVPSASLV-SDDPSLLFTVAGMVPFVPYLTGIVPAPFPRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  AWDLLT       
Sbjct: 61  SVQKCIRT----LDIEEVGKTPRHGTFFQMCGNFSFGDYFKEQAIAFAWDLLTTAETEGG 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
              D + L++TVY+ED+EA ++W+++SGL+ ++I  +  + N+WS  + GP GPCSEIFF
Sbjct: 117 LGFDPKDLWVTVYEEDDEAREIWRRVSGLAEERIQGLGKDTNYWSTGQPGPAGPCSEIFF 176

Query: 178 DQGEC--IPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMG 229
           D+G    I GG P + ++  RY+EIWNLVFMQF   E   K +  IL   PK +IDTG+G
Sbjct: 177 DRGPAYGIDGG-PATDDD--RYVEIWNLVFMQFLRGEGTGKDDFEILGDLPKKNIDTGLG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----VNHRVIVDHLRSSSFL 285
           LER+A + Q   N Y+ID  + ++  + ++ G  Y GN      V  RV+ DH+RS+  L
Sbjct: 234 LERVAFLKQGVENMYEIDQVRPVLDRAAELAGKPY-GNEAHEDDVRLRVVADHVRSALML 292

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+ P+NEGRGYVLRR++RR +    LLG        L P     M +AYPE+     
Sbjct: 293 MTDGVTPSNEGRGYVLRRLLRRTVRAMWLLGVEAATFPALFPVSRDAMKAAYPEVETEFA 352

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402
              +   +E+E F +TL  G  +LD  +++    GK E L GD AF L+DT+G P+D+  
Sbjct: 353 RTSQLAYAEEETFLRTLVAGTSILDTAVANTQKAGKRE-LAGDTAFLLHDTYGFPIDLTL 411

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL+ +D  +F+  + +QR+RA+A +    +   +   +S     G T F GY  
Sbjct: 412 EMAEEAGLS-VDRAAFDTLMADQRARAKADAKAKKTALADLSVYSGLRALGETVFTGYTE 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                          S V  ++  G    +AV GQ  EV+   T  YA
Sbjct: 471 LE-----------------------TESSVLGLIIDGHSANKAVEGQVAEVILGATALYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAGGQ  DTG  +G G  L + DVQK   G+  H  +V  G +   +     +D   RR 
Sbjct: 508 EAGGQDADTGTIVGPGYVLDVLDVQKPVRGLVSHRVLVRSGEVGVGVPATSLVDADYRRG 567

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HS TH++H AL  +LGS+  Q+GS      LR D + ++ ++      IE+  N  
Sbjct: 568 AKQAHSGTHIIHAALRQVLGSNAHQSGSYNKAGYLRLDFSWNQALSPETRSEIEEISNSA 627

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I QNL V TR +   +A A GA AL G KY D VRVV +    GG  S  LC GTHV+ +
Sbjct: 628 IRQNLEVTTRELPLAEAKALGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVARS 683

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            EI L+ +VSESS+ +  RR+E++ G  A   L  +   +  L+S LK  +
Sbjct: 684 AEIGLINLVSESSVGSTNRRVESLVGLEAFKDLAVERTIVSQLSSSLKTPR 734


>gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana]
          Length = 1003

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P      + +A
Sbjct: 64  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 124 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 182

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC
Sbjct: 183 PTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 240

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D+ G      L  + +     +EIWNLVF+QF +++      LP   +DTGMG E
Sbjct: 241 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 298

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+ +VLQ K +NYD D+F  +    ++ TG +     +         + +RV+ DH+R+ 
Sbjct: 299 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 358

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+ ++   MG  + EL 
Sbjct: 359 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 418

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + +  I + ++ E+  F KTL +G+         + +   L+GD AF L+DT+G PLD+ 
Sbjct: 419 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 477

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   RGL  +D+  FN+A+EE R R+R                S + K          
Sbjct: 478 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 513

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512
              G+  M  D      K  +  T+            S +KAI      +E + +   V 
Sbjct: 514 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 570

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569
           +V   T FYAE GGQ+ DTG   G      + +VQ    G FV H      E G +    
Sbjct: 571 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 628

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +DY+ R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+  
Sbjct: 629 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 688

Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
            +L+ IE  VN  I   L V ++  +++    I  G  A+ G  Y D VRVVS+      
Sbjct: 689 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEAYPDPVRVVSIGRKVED 747

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 748 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 802


>gi|213404528|ref|XP_002173036.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212001083|gb|EEB06743.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 961

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 333/975 (34%), Positives = 504/975 (51%), Gaps = 110/975 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            + +R+TF+++F+++GH  +PSSS+IP  DPTL+F N+GM  +K IF G   P       
Sbjct: 11  ANKVRSTFIDYFKEHGHTFVPSSSVIPFEDPTLLFANAGMNQYKPIFLGTVDPSSSFAKL 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI LAW LLT+ F
Sbjct: 71  KRACNSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIPLAWKLLTEVF 130

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L+  +LY+T +          D EA  +W ++ G+  +++I     DNFW M E GPCG
Sbjct: 131 KLNPDQLYVTYFGGHEESGLGPDLEAKNIWLEM-GIPPERVIPGNLKDNFWEMGEQGPCG 189

Query: 171 PCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           PCSEI +D+  G  +P  +   +++    +EIWN+VFM+F ++       LP   IDTGM
Sbjct: 190 PCSEIHYDRIGGRSVPELV---NQDDPNVLEIWNIVFMEFNREKDGSLRPLPNKHIDTGM 246

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHL 279
           G ER+ +V+Q K++NYD DLF  L Q  +++TG + YEG    +++      +RV+ DH+
Sbjct: 247 GFERLVSVVQNKSSNYDTDLFAPLFQKIQELTGARPYEGRMGEDDVDGIDTAYRVVADHV 306

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSA 336
           R+ +F I+DG +P NEGRGYVLRRI+RR   Y R   +  P+      L   +  +MG  
Sbjct: 307 RTLTFAISDGGVPNNEGRGYVLRRILRRGARYVR-KKFNTPIGDFFSRLALVVAEQMGEF 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PE+      ++E L  E+E F +TLDRG  + +   +   K E  +L G   ++LY+T+
Sbjct: 366 FPEVRSKLEDVKEILDEEEESFSRTLDRGEKMFEQYAAAAQKTESKMLKGMDVWRLYETY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFN--QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           G P+D+   +    GL  ID+  FN  QA  ++ SR RA   G  S T   +        
Sbjct: 426 GFPVDLTHLMAEEAGLK-IDVEGFNAAQAHSKEISR-RAAKAGGDSATMVTLDI---HAL 480

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQ 509
           GA       L +  +  K D     +   I+ T      VKA+          E+  +G+
Sbjct: 481 GA-------LAKMPEVPKTDDHFKHESGTINAT------VKALYHPSGFQTSTEKFEAGE 527

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            + ++ D+T FYAE GGQ  DTG    DG +  ++T+VQ    G  +H    E G L   
Sbjct: 528 NIGILLDRTNFYAEQGGQEYDTGRITIDGKLEFRVTNVQVYG-GYVLHTGFCEYGSLNVG 586

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             ++   D   RR L  NH+ TH+L+ AL  +LG  V Q GS ++P+ LRFD +H   ++
Sbjct: 587 DEVICEYDELRRRPLMNNHTVTHILNFALREVLGEGVDQRGSLVSPEKLRFDFSHKAALS 646

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV-- 681
             EL+ +E+  N  IA+NL    R+  +E  +A     +G  A+ G  Y D VRVV V  
Sbjct: 647 IKELERVENICNQKIAENL----RVYAKELPLAISKEIAGLRAVFGEVYPDPVRVVCVGA 702

Query: 682 ---------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                    + E    +S   CGGTH+  TGEI    I+ ES I  GIRRI A+T   A 
Sbjct: 703 DIDEIIKDPKNEQWRQYSIEFCGGTHLPKTGEIKDFVILEESGIAKGIRRIVAVTAADAN 762

Query: 733 S--HLMGQ-DEKLKSLASF--------------LKVSQGNVVG-RVEEIWEEYRKL---- 770
               +  + D++L  LA+               + +SQ +V   R   + E++ K+    
Sbjct: 763 QVCRIANEFDQRLDRLAAMPHGPEKEAEIKLVTVDLSQLSVSALRKHAMKEKFTKITKQF 822

Query: 771 --QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             Q+  A  K Q +    V D          F+S +    + K L   +   +K +    
Sbjct: 823 QDQVKAANAKEQKDAVKAVADYFEEHPESKFFVSKLNVSPNPKVLNFAISYAKKNLAGKS 882

Query: 825 IMLVGI--SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + L+    ++  K +   +V+++ L +  A + ++  + V+ GG  GG+    Q  G N 
Sbjct: 883 LYLLASNGAQPDKVAHACLVSQEALPKVTAQEWSQKVSHVV-GGRCGGKKDSCQGVGTNA 941

Query: 883 NKADQAIAGVASFLK 897
           +K DQAI     F +
Sbjct: 942 DKIDQAIEEAIEFFQ 956


>gi|229817702|ref|ZP_04447984.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM
           20098]
 gi|229785491|gb|EEP21605.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM
           20098]
          Length = 892

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 331/920 (35%), Positives = 495/920 (53%), Gaps = 74/920 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S I   +L++F  + H ++PS+SLI  N PT +FT +GMVPF     G++   +  + +
Sbjct: 3   TSEIAKRYLDYFAAHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTAPHPRMAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
            QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT   D    
Sbjct: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117

Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  +L++T + +DEEA  LWK   G+  + I  +   DNFW+    GP GPCSEI+ D
Sbjct: 118 GFDPEKLWMTTFTDDEEARSLWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176

Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230
           +G    + GG P + E   RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 177 RGPEFGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G KY  N    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKNNIYETDEVYPVIEAAERLSGHKYGENEAFDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG  E +M  L P     M ++YPEL +    + 
Sbjct: 294 GVRPSNTGRGYVLRRLLRRTVKAMRALGVQEAVMPTLFPTSKAAMEASYPELNKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    E++ F +TL+ G  + D  +S     GK  +   D AFKL+DT+G P+++  ++ 
Sbjct: 354 EAAYGEEDAFLRTLEAGTEIFDMAVSKAKESGKGTVSGSD-AFKLHDTYGFPIELTLEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY    
Sbjct: 413 EEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGY---- 467

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAE 523
                             D +    + V  I+Q+G+    AV+G   +EV+ D+TPFYAE
Sbjct: 468 -----------------TDFS--ARATVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAE 508

Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 509 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTQVNANIDLNRRGA 568

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VN+ 
Sbjct: 569 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNEK 628

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           + +NL V T+ M  +DAIA GA  L G KY D VRVVS+  EDG   S  LCGGTH+   
Sbjct: 629 LRENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHIDHV 685

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761
           G+I  + I+SE+S+ +G+RR++A+ G  A  +   +   +  L+  L      +  RV  
Sbjct: 686 GKIGAINIMSEASVGSGVRRVDAVVGAGAYEYNAREHALVSQLSDKLNARPDELAERVNA 745

Query: 762 ---EIWEEYRKLQLIH----AKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSV 812
              ++ E  R+L  ++    A    QL V+D +    +      ++      D+   K+V
Sbjct: 746 LLAKLKESDRRLAAMYEGQLAATVPQL-VQDANASAASVKVAAKNVGHFGSFDALR-KTV 803

Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
           MD   +  +    ++ L G+S E K  V +       D    A DL R ++K+L GGGGG
Sbjct: 804 MDVRARLGEDAPVVVALAGVSAEDKPMVAVATNAAARDLGIKAGDLVRGASKML-GGGGG 862

Query: 870 GRPHMAQSGGPNGNKADQAI 889
           G+P  AQ GG + +K D+A+
Sbjct: 863 GKPDFAQGGGADASKIDEAL 882


>gi|255948530|ref|XP_002565032.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592049|emb|CAP98312.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 958

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/770 (37%), Positives = 417/770 (54%), Gaps = 70/770 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQAV 61
           +R TFL++F++NGH  +PSS + P +DPTL+FTN+GM  FK+IF G      +    +  
Sbjct: 13  VRDTFLDYFKQNGHTFVPSSPVAPLSDPTLLFTNAGMNQFKSIFLGTVDASSDFGKMKRA 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ + LD
Sbjct: 73  TNSQKCLRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVYGLD 132

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA +LWK + G+    I+     DNFW M + GPCGPCS
Sbjct: 133 PDRLYVTYFEGNEAGGLEPDLEAKELWKSV-GVPESHILPGDMKDNFWEMGDQGPCGPCS 191

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           E+ +D+     GG   +   +E+    +EIWN VF+Q+ ++       LP   +DTGMG 
Sbjct: 192 EVHYDR----IGGRNAAHLVNEDDPNVLEIWNNVFIQYNREPDSSLRSLPNKHVDTGMGF 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281
           ER+ ++LQ K +NYD D+F  + QA +  TG + Y G    +        +RV+ DH+R+
Sbjct: 248 ERLVSILQNKPSNYDTDVFTPIFQAIQNTTGAREYRGQFGADDADGIDTAYRVVADHVRT 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
             F I+DG++P NEGRGYV+RR++RR   YAR     +       L+P +  ++G  +PE
Sbjct: 308 LMFAISDGVIPNNEGRGYVIRRVLRRGARYARKYFQVDIGNFFAKLVPTVVDQLGEMFPE 367

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           L + +  + E L  E+  F KTLDRG    +     + +   ++L+G   ++LYDT G P
Sbjct: 368 LKRKQQDVVEILDEEELSFAKTLDRGERQFEQYAQQAKVKGTDMLHGADVWRLYDTFGFP 427

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   RGL  ID + F    EE R +A+  S G              +K  A   
Sbjct: 428 VDLTRIMAEERGLR-IDDVEF----EEARLKAKEASKG--------------QKKAAENT 468

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVV 514
           +  D+    K  K +        P      +++ VKAI          ++   G ++ ++
Sbjct: 469 VKLDVHDLGKLEKMNDVQKTDDSPKFGRGNITAHVKAIYHGKTFHKSTDDVPEGAQLGII 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D T FYAE GGQ  DTG  I DG   L++ DVQ  A G  +H   ++ G      S++ 
Sbjct: 529 LDCTNFYAEQGGQENDTGKIIIDGQAELEVGDVQSYA-GYVLHTGFMKYGSFTVGNSVIC 587

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ AEL+
Sbjct: 588 EYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKTAISDAELE 647

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH--- 689
           +IE    + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E   +    
Sbjct: 648 NIEAKSTEYIRQNCAVYSQELPLATAQQISGVRAVFGETYPDPVRVVSVGVELEEILKNV 707

Query: 690 --------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   S   CGGTHV  TG+I  L I+ ES I  G+RRI A+TG+ A
Sbjct: 708 KDPRWQEVSIEFCGGTHVQKTGDIKDLIILEESGIAKGVRRIIAVTGEDA 757


>gi|149640708|ref|XP_001506178.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 1
           [Ornithorhynchus anatinus]
          Length = 968

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 302/798 (37%), Positives = 435/798 (54%), Gaps = 66/798 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        D D E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+QF ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG + Y G    +        +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  ++     L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               DL       K + +        +  + V++ VKA+ ++   V+E  +GQ+  VV D
Sbjct: 473 LRARDLEVTDDSPKYNYRANASG-SYEFESPVAT-VKALRREKTFVDEVSTGQECGVVLD 530

Query: 517 QTPFYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           +T FYAE GGQ+ D G  + D           + +VQ +  G +V H     G L+    
Sbjct: 531 KTCFYAEQGGQIFDEGYLVKDDDGSEDKTEFTVKNVQVR--GGYVLHIGTVYGNLKVGDQ 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ 
Sbjct: 589 VRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------Y 683
           E+K  E+  N +I    PV  +      A A  G  A+    Y D VRVVS+        
Sbjct: 648 EIKKTEEIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELL 707

Query: 684 ED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           ED     G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+  L   
Sbjct: 708 EDPSSPAGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKAL--- 764

Query: 739 DEKLKSLASFLKVSQGNV 756
             K +SL + L V +  V
Sbjct: 765 -RKAESLKTALSVLEAKV 781


>gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana]
 gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana]
 gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana]
          Length = 955

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P      + +A
Sbjct: 16  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 76  CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC
Sbjct: 135 PTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D+ G      L  + +     +EIWNLVF+QF +++      LP   +DTGMG E
Sbjct: 193 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+ +VLQ K +NYD D+F  +    ++ TG +     +         + +RV+ DH+R+ 
Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 310

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+ ++   MG  + EL 
Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 370

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + +  I + ++ E+  F KTL +G+         + +   L+GD AF L+DT+G PLD+ 
Sbjct: 371 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 429

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   RGL  +D+  FN+A+EE R R+R                S + K          
Sbjct: 430 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 465

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512
              G+  M  D      K  +  T+            S +KAI      +E + +   V 
Sbjct: 466 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 522

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569
           +V   T FYAE GGQ+ DTG   G      + +VQ    G FV H      E G +    
Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 580

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +DY+ R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+  
Sbjct: 581 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 640

Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
            +L+ IE  VN  I   L V ++  +++    I  G  A+ G  Y D VRVVS+      
Sbjct: 641 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRKVED 699

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 700 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754


>gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 963

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P      + +A
Sbjct: 16  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 76  CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC
Sbjct: 135 PTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D+ G      L  + +     +EIWNLVF+QF +++      LP   +DTGMG E
Sbjct: 193 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+ +VLQ K +NYD D+F  +    ++ TG +     +         + +RV+ DH+R+ 
Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 310

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+ ++   MG  + EL 
Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 370

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + +  I + ++ E+  F KTL +G+         + +   L+GD AF L+DT+G PLD+ 
Sbjct: 371 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 429

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   RGL  +D+  FN+A+EE R R+R                S + K          
Sbjct: 430 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 465

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512
              G+  M  D      K  +  T+            S +KAI      +E + +   V 
Sbjct: 466 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 522

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569
           +V   T FYAE GGQ+ DTG   G      + +VQ    G FV H      E G +    
Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 580

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +DY+ R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+  
Sbjct: 581 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 640

Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
            +L+ IE  VN  I   L V ++  +++    I  G  A+ G  Y D VRVVS+      
Sbjct: 641 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRKVED 699

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 700 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754


>gi|320040301|gb|EFW22234.1| alanyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 964

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 293/772 (37%), Positives = 426/772 (55%), Gaps = 75/772 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 20  VRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 79

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L+
Sbjct: 80  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGLE 139

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D E   LW  + G+  D I+     DNFW M + GPCGPCS
Sbjct: 140 PDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPCS 198

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           E+ +D+     GG   +   + +    +EIWN VF+Q+ ++++     LP   +DTGMG 
Sbjct: 199 EVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGY 254

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +VLQ+K +NYD D+F  L  A  ++TG++ Y G       + I   +RV+ DH+R+
Sbjct: 255 ERLVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRT 314

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 315 LTFAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPE 374

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGL 396
           + + +  + E L  E+  F KTLDRG    + + +   KD     L+G   ++LYDT G 
Sbjct: 375 IKKKQTDVMEILDEEEISFAKTLDRGERQFE-IYAQQAKDSGSNKLHGADVWRLYDTFGF 433

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID + F    EE R +A+  S G     ++ +  S+        
Sbjct: 434 PVDLTQLMAEERGLS-IDNVEF----EEARLKAKEASKGQAKAASDLLKLSV-------- 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---SGQKVEV 513
              +DL   SK  K+              N +S IV A+    E V+       G ++ +
Sbjct: 481 ---HDL---SKLEKDKVPKTNDDAKFGRGNILSQIV-AVYHDKEFVDSTSGIPEGDQIGI 533

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + +VQ     +F H   ++ G L    S++
Sbjct: 534 ILDKTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVF-HTGFIKYGNLSVGDSVI 592

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L
Sbjct: 593 SEYDELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDL 652

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED---- 685
           + IE+   + I QN  V ++ +    A   +G  A+ G  Y D VRVVS  VE E+    
Sbjct: 653 EKIEEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKD 712

Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                  GV S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A
Sbjct: 713 VKDPRWKGV-SIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDA 763


>gi|30694735|ref|NP_175439.2| ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/
           ligase, forming aminoacyl-tRNA and related compounds /
           nucleic acid binding / nucleotide binding [Arabidopsis
           thaliana]
 gi|21542451|sp|P36428|SYA_ARATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
 gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 1003

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P      + +A
Sbjct: 64  VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 124 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 182

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCGPC
Sbjct: 183 PTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 240

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D+ G      L  + +     +EIWNLVF+QF +++      LP   +DTGMG E
Sbjct: 241 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 298

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+ +VLQ K +NYD D+F  +    ++ TG +     +         + +RV+ DH+R+ 
Sbjct: 299 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 358

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+ ++   MG  + EL 
Sbjct: 359 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 418

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + +  I + ++ E+  F KTL +G+         + +   L+GD AF L+DT+G PLD+ 
Sbjct: 419 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 477

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   RGL  +D+  FN+A+EE R R+R                S + K          
Sbjct: 478 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 513

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512
              G+  M  D      K  +  T+            S +KAI      +E + +   V 
Sbjct: 514 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 570

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569
           +V   T FYAE GGQ+ DTG   G      + +VQ    G FV H      E G +    
Sbjct: 571 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 628

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +DY+ R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+  
Sbjct: 629 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 688

Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
            +L+ IE  VN  I   L V ++  +++    I  G  A+ G  Y D VRVVS+      
Sbjct: 689 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRKVED 747

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 748 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 802


>gi|119195813|ref|XP_001248510.1| alanyl-tRNA synthetase, cytoplasmic [Coccidioides immitis RS]
          Length = 1023

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 294/772 (38%), Positives = 426/772 (55%), Gaps = 75/772 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 79  VRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 138

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L+
Sbjct: 139 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGLE 198

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D E   LW  + G+  D I+     DNFW M + GPCGPCS
Sbjct: 199 PDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPCS 257

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           E+ +D+     GG   +   + +    +EIWN VF+Q+ ++++     LP   +DTGMG 
Sbjct: 258 EVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGY 313

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +VLQ+K +NYD D+F  L  A  ++TG++ Y G       + I   +RV+ DH+R+
Sbjct: 314 ERLVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDVDGIDTAYRVVADHVRT 373

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 374 LTFAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPE 433

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGL 396
           + + +  + E L  E+  F KTLDRG    + + +   KD     L+G   ++LYDT G 
Sbjct: 434 IKKKQTDVMEILDEEEISFAKTLDRGERQFE-IYAQQAKDSGSNKLHGADVWRLYDTFGF 492

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID + F    EE R +A+  S G     ++ +  S+        
Sbjct: 493 PVDLTQLMAEERGLS-IDNVEF----EEARLKAKEASKGQAKAASDLLKLSV-------- 539

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---SGQKVEV 513
              +DL   SK  K+              N +S IV AI    E V+       G ++ +
Sbjct: 540 ---HDL---SKLEKDKVPKTNDDAKFGRGNILSQIV-AIYHDKEFVDSTSGIPEGDQIGI 592

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + +VQ     +F H   ++ G L    S++
Sbjct: 593 ILDKTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVF-HTGFIKYGDLSVGDSVI 651

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L
Sbjct: 652 SEYDELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDL 711

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED---- 685
           + IE+   + I QN  V ++ +    A   +G  A+ G  Y D VRVVS  VE E+    
Sbjct: 712 EKIEEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKD 771

Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                  GV S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A
Sbjct: 772 VKDPRWKGV-SIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDA 822


>gi|327281303|ref|XP_003225388.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 969

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 314/869 (36%), Positives = 453/869 (52%), Gaps = 102/869 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F+ FF +N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFINFFVENQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A + A DLLTKE
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKFALDLLTKE 125

Query: 118 FDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E A         ++W  + GL  D+I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLQPDLDCKQIWLDL-GLPEDRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSE+ +D+     GG   S   +++    +EIWNLVF+QF ++       LPK SIDT
Sbjct: 185 GPCSEMHYDR----IGGRDASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGCRPYTGQVGEDDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A
Sbjct: 301 HARTITVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAPRGFFATLVDVVVESLGGA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL+RG  +LD  +  LG ++++ GD A+ LYDT+G 
Sbjct: 361 FPELKKDPEMVKDIINEEEVQFLKTLNRGRRILDRKIQSLGDNKVIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLK-VDMEGF----EEERKAAQLKSQGKGGGDEDLIILDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI--VKAIVQQGEIVEEAVSGQKVEVV 514
                  +G K   +  K      P       S +  VKA+ ++   VEE  +GQ+  +V
Sbjct: 473 LRS----KGLKATDDSLKYNYASDPSGTYEFQSPVATVKALRREKVFVEEVSTGQECGIV 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIG-------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
            DQT FYAE GGQ+ D G  +        D     + +VQ +  G +V H     G L+ 
Sbjct: 529 LDQTCFYAEQGGQIYDEGYLVKEEDEGSEDKTEFTVKNVQVR--GGYVLHVGTVYGSLKV 586

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++ L ID   RR +  NH+ATH+L+ AL  +LG    Q GS + PD LRFD T    +
Sbjct: 587 GDTVRLYIDEPRRRPVMSNHTATHILNFALRAVLG-EADQRGSLVAPDRLRFDFTAKGAM 645

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVS-- 680
           ++ E+K  E  VN +I +       +  +E A+A+  A     A+    Y D VRVVS  
Sbjct: 646 STQEIKKAEAIVNQMIQE----AKVVYAKECALAAAKAIQGLRAVFDETYPDPVRVVSIG 701

Query: 681 VEYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +  ED         G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A
Sbjct: 702 IPIEDMLADPSNAAGAITSVEFCGGTHLQNSSHAGHFVIVSEEAIAKGIRRIVAVTGAEA 761

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           +  L     K++SL   L                       + AK K+Q        H+I
Sbjct: 762 QKAL----RKVESLKKLLAD---------------------LEAKVKVQTAPNKDVQHEI 796

Query: 792 ADV--NFMSHIISEVDSKELKSVMDALQK 818
           AD+  +  + +I +    EL+  + AL+K
Sbjct: 797 ADLGESLATAVIPQWQKDELRESLKALKK 825


>gi|255713044|ref|XP_002552804.1| KLTH0D01848p [Lachancea thermotolerans]
 gi|238934184|emb|CAR22366.1| KLTH0D01848p [Lachancea thermotolerans]
          Length = 955

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/771 (37%), Positives = 415/771 (53%), Gaps = 68/771 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            S++R+TF+EFF++  H  + SS +IP +DPTL+F N+GM  +K IF G   P       
Sbjct: 11  ASNVRSTFMEFFKQREHTFVASSPVIPYDDPTLLFANAGMNQYKPIFLGTVDPSSDYYSL 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK +
Sbjct: 71  KRAMNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKDAIQYSWELLTKVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T ++ D+        EAF+LWK + G+S D I+     DNFW M + GPCG
Sbjct: 131 GIPSERLYVTYFEGDQKQGLEPDLEAFELWKSV-GVSEDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WN+VF+Q+ ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPNVLEVWNIVFIQYNREQNGTLKSLPSKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F+ L    +++TG + YEG       + I   +RV+ DH
Sbjct: 246 MGFERLVSVLQDVKSNYDTDVFQPLFARIQEITGARPYEGKFGAEDADGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L  +  + 
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSSLAPTLIDQSKAM 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTH 394
           +PE+ +    + E L  E+  F KTLDRG  L +         KD+ L+G   ++LYDT+
Sbjct: 366 FPEINRDPSYLFEILDEEEASFAKTLDRGEKLFEKYAQAAAQTKDKTLDGLQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E    ++                    K  A
Sbjct: 426 GFPVDLTELMAEEKGLK-IDGPGFEKAKQESYEASKKGG-----------------KKSA 467

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEV 513
           +  I  ++   S    E+       P  +  N + +IV  I      V+E +  G++  V
Sbjct: 468 SDLIKLEVHELSTLNSENVPKTDDSPKYESAN-IEAIVLRIFDGENFVDEISEVGKQYGV 526

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D T FYAE GGQ  D G  + D +    + +VQ    G   H   +  G L     ++
Sbjct: 527 ILDSTCFYAEQGGQEYDMGTLVIDDVAEFSVENVQ-LYNGYVFHTGQLGEGKLSVGDKVI 585

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + D   R  +  NH+ TH+L+ AL  +LG+ V Q GS + P+ LRFD +H K +   EL
Sbjct: 586 ASFDELRRFPIKNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKKAVALDEL 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681
           K +E   N+ I  NLPV  + +  + A   S   A+ G  Y D VRVVSV          
Sbjct: 646 KEVERICNEQIKANLPVYYKNVPLDLARKISSVRAVFGETYPDPVRVVSVGKPVDDMLVD 705

Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              E+   +S   CGGTHVS TG+I    I+ ES I  G RRI A++G  A
Sbjct: 706 PTSEEWQKYSVEFCGGTHVSKTGDIKEFVIIEESGIAKGTRRIVAVSGSEA 756


>gi|50310341|ref|XP_455190.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644326|emb|CAG97897.1| KLLA0F02431p [Kluyveromyces lactis]
          Length = 956

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 320/968 (33%), Positives = 495/968 (51%), Gaps = 99/968 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            +++R+TFL++F+  GH  +PSS +IP +DPTL+F N+GM  +K IF G   P       
Sbjct: 11  AANVRSTFLDYFKSKGHTFVPSSPVIPFDDPTLLFANAGMNQYKPIFLGTVDPSSDFYKL 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +  T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK +
Sbjct: 71  KRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T ++ DE        EA  LWK + G+  D I+     DNFW M E GPCG
Sbjct: 131 GIPGDRLYVTYFEGDEKLGLEPDFEARDLWKSV-GVKDDHILPGNAKDNFWEMGEQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ +D+     GG   +   +++    +EIWN VF+QF ++  +    LP   +DTG
Sbjct: 190 PCSEVHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQFNREQDRSLRALPAKHVDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           MG ER+ +VL +  +NYD D+F+ L    +++TG++ Y G       + I   +RV+ DH
Sbjct: 246 MGFERLVSVLHDVRSNYDTDVFEPLFNRIQEITGVRSYTGKFGAEDTDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L   L  ++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSQLSVTLIEQVKDM 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTH 394
           +PE+ +    + E L  E+  F KTLDRG  L +       K  D+ L+G   ++LYDT+
Sbjct: 366 FPEVARDPSYLFEILDEEEASFAKTLDRGEKLFEKYAEDALKKADKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID I F +A +E    ++    G   G ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDTIGFEKAKQESYEASKK---GGKKGASDLIRLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEV 513
                   L G    K D            T  V + +  I    + V+     G++  V
Sbjct: 478 -----LSQLNGDNVAKTDDSSKYG------TENVEATILRIYDGEKFVDSMTEIGKQYGV 526

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  + DG     + +VQ    G   H   +  G L    S++
Sbjct: 527 ILDKTCFYAEQGGQEFDTGKLVIDGEAEFNVDNVQ-AYNGYVFHTGSLGDGKLSIGDSII 585

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + +   R  L  NH+ TH+L+ AL  +LG+ V Q GS + P+ LRFD +H + ++  EL
Sbjct: 586 ASYEELRRHPLRNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKRALSYEEL 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV---------- 681
             +E   N+ I  NL V  + +  + A   S   A+ G  Y D VRVVS+          
Sbjct: 646 VEVEKLSNEKIRDNLTVYYKEVALDLAKTISSVRAVFGETYPDPVRVVSIGKAVEEVLEN 705

Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSH 734
              E+   +S   CGGTHV+ T +I    IV ES I  GIRRI A++G      QR  + 
Sbjct: 706 PTSEEWQKYSIEFCGGTHVAKTSDIKEFVIVEESGIAKGIRRIVAVSGPEAYEVQRIATE 765

Query: 735 LMGQ-------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHA 775
             G+              +KLK L   L       +++ ++  +  +I +E +      A
Sbjct: 766 FDGELTAVEKLPFSPLKAQKLKELGVRLGQLTISVITKTDLKDKFNKIEKEVKDELKSRA 825

Query: 776 KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K++++  ++D+  H  A+     ++ HI    ++K +   ++ ++   +   I L   ++
Sbjct: 826 KKEIKQTLDDVKHHFDANKESSFYVKHIDIPTNAKAITEAINHIKTNSKDKSIYLFTCNE 885

Query: 833 E--KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K A    +    +    +   LA+  +  + GG  GG+ ++ Q  G   N  D A+A
Sbjct: 886 PDGKVAHGCYISDAAIAQGVDGSSLAKTVSSSI-GGKAGGKGNVFQGMGDKPNGIDSAVA 944

Query: 891 GVASFLKK 898
            V + LK+
Sbjct: 945 EVEALLKE 952


>gi|162447763|ref|YP_001620895.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|205829962|sp|A9NGN9|SYA_ACHLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161985870|gb|ABX81519.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 851

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 338/936 (36%), Positives = 485/936 (51%), Gaps = 138/936 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR T+L FF+  GH + PS+SLIP +DPTL++ N+G+ P K  F G E P  + +T +QK
Sbjct: 6   IRQTWLNFFKDKGHIIEPSASLIPVDDPTLLWINAGVAPLKKYFDGTETPKSKRITNIQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
            +R     ND+DNVG+T RHHTFFEM+GNFS G YFK+ AI+  ++LLT  K FD+   +
Sbjct: 66  SIRT----NDIDNVGKTARHHTFFEMMGNFSIGDYFKKEAIEFGFELLTSPKYFDIPLDK 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+T Y  D EA   W K+ G+  D +I +    NFW +   GP GP +EIFFD+G    
Sbjct: 122 LYMTYYPTDVEAKNTWLKL-GVKEDHLIPV--EGNFWEIG-AGPSGPDTEIFFDRGTSYD 177

Query: 185 GGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGMGLERMATVLQ 238
              P       E ER+IEIWN+VF Q+    K +R     LP  +IDTG GLER A VLQ
Sbjct: 178 LRGPELIRDDIENERFIEIWNIVFSQYNADPKLKRSEYKELPNKNIDTGAGLERFACVLQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
               N++ DL   +I   E ++G+KY+G   +  +VI DH+++  F I+DG   +NEGRG
Sbjct: 238 GTKTNFETDLHYPVILKVESLSGVKYDGQ--MAFKVISDHIKTLVFAISDGANLSNEGRG 295

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ Y + +G+  P +  L+  +   M + Y  LI+  +++++ +  E+E+F
Sbjct: 296 YVLRRILRRAVKYGKSIGFDAPFLHLLVDTVVDMMSNFYTNLIETAVIVKKIILKEEEKF 355

Query: 359 GKT-LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
             T LD    LL  +     KD  L+G+ AFKLYDT+G P+++  +     G+  +DI  
Sbjct: 356 FSTILDGEKHLLQSI-----KDGKLSGEDAFKLYDTYGFPIELTIEYAEEHGIT-VDIKG 409

Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIW-FSLKEKYGATQFIGYDLLRGSKFMKE 471
           FN+ALE Q+SR+R      HS+    G  E +  F +      ++F+GYD L+       
Sbjct: 410 FNEALEVQKSRSRDARKVTHSM---KGQDEALLNFDV-----PSEFVGYDYLQ------- 454

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V  +  QG             +V D+TPFYA +GGQ+ DT
Sbjct: 455 ----------------TESKVIKVFDQG-------------IVLDKTPFYANSGGQISDT 485

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSAT 590
           G   G    L + DV K   G  +H  ++E     TE   VL I  Q++R  ++ NH+AT
Sbjct: 486 GSING----LVVRDVIKLPHGQHLH--LIETDAF-TEGDEVLCIVNQDKRHHTMKNHTAT 538

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL+ AL   LGSHV Q GS      L FD+ H + I   E+ ++E  V   I + + VV
Sbjct: 539 HLLNQALKDTLGSHVKQQGSYNGDLKLTFDINHYETIKDEEILTVEKIVQQKIKEQIDVV 598

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T ++  ++A   GAA   G KY D VRVV V     G  S   CGGTHV +T +I    I
Sbjct: 599 THVLPIDEAKKLGAAMQFGEKYGDIVRVVDV-----GSWSMEFCGGTHVKNTSDIKNFMI 653

Query: 711 VSESSIRAGIRRIEAITGQ------RARSHLMG----QDEKLKSLASFLKVSQGNVVGRV 760
            S  SI +G  R EAITGQ      +   +L+       EK+KSL       + + +  +
Sbjct: 654 TSVESIGSGTYRFEAITGQVLSQVKKIVQNLLDMIHQHIEKIKSL------DENHNLKPL 707

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-------------- 806
            E+   Y+ +  +    +   N E     K  +   +  II + D+              
Sbjct: 708 PELTGSYQDIINLRLYNQYISN-ESKVVEKQLEAKLIDQIILQADTFIPKTIEPTTYIYS 766

Query: 807 -----KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
                  LK ++D L  KI++  ++L+ IS E KAS L+  + +      A ++     K
Sbjct: 767 DNLPQSSLKPLIDVLYDKIKADTVVLLNIS-EDKASYLVKSSVN-----EARNVINELNK 820

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           VL  G GGG+P  AQ G        QA+  V  FLK
Sbjct: 821 VL-DGRGGGKPDFAQGGT-------QALDKVQMFLK 848


>gi|241956830|ref|XP_002421135.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36]
 gi|223644478|emb|CAX41294.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36]
          Length = 969

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 327/973 (33%), Positives = 494/973 (50%), Gaps = 111/973 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59
           S +R+TFL++F++  H  +PSSS++P NDPTL+F N+GM  +K IF G   P       +
Sbjct: 27  SKVRSTFLDYFKQQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASLK 86

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + 
Sbjct: 87  RAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKVYG 146

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T +  DE        EA   W K+ G+  D I+  +  DNFW M + GPCGP
Sbjct: 147 LKEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVKDNFWEMGDQGPCGP 205

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   S   + +    IE+WN+VF+Q+ ++       LP   IDTGM
Sbjct: 206 CSEIHYDR----IGGRNASDLVNMDDPNVIEVWNVVFIQYNREADGNLRTLPNKHIDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHL 279
           G ER+ ++LQ K +NYD D+F  +     ++TG++       N         +RVI DH+
Sbjct: 262 GFERLVSILQNKFSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHV 321

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL---MMHLLPALCTEMGS 335
           R+ +F I DG +P NEGRGYVLRRI+RR   Y R  + Y  P+      L+  +  +   
Sbjct: 322 RTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNY--PIGGFFQQLVDVVIEQNKE 379

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393
            +PE+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT
Sbjct: 380 IFPEISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDT 439

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+ + +    GL  ID   F +A EE R  ++      GSGT          K G
Sbjct: 440 YGFPVDLTRLMAEEAGLK-IDEDGFERAKEESREASK------GSGT----------KDG 482

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKV 511
            T  +  D+   S+  + D      K   +   G+ ++   +V    G    E++    +
Sbjct: 483 KT-LVKLDVHALSELDQND---TIPKTNDEFKYGLENVKAKVVGIYDGSKFVESIEDPSI 538

Query: 512 E--VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +  ++ D+TPFYAE GGQ  DTG  + DG     + +VQ  A G  +H   +  G L   
Sbjct: 539 QYGILLDKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYA-GYVLHTGNIVDGKLNVG 597

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             ++ T D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD ++ + +T
Sbjct: 598 DEIIATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSYKQAVT 657

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------ 681
             EL+ IE   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+      
Sbjct: 658 PKELEKIEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDD 717

Query: 682 ---EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
              +  +   H  S   CGGTHV+ TG+I  L IV ES I  GIRRI A+TG  A  H+ 
Sbjct: 718 LLADPTNAKWHEISIEFCGGTHVAKTGDIKDLVIVEESGIAKGIRRIVAVTGHDAH-HVQ 776

Query: 737 G--------------------QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------ 770
                                ++ K K L   LK    +V+ + + + E++ KL      
Sbjct: 777 KVANEFEQEIDAAASLPFGVVKESKSKELGVALKKLSISVLDK-QRLTEKFNKLDKSIKD 835

Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                Q    K+ L +    L+  +      +SH+    ++K +   ++ ++K+ +S  I
Sbjct: 836 NLKARQKEETKKTLDVVNNWLNDKENVSSFLVSHVPITANAKAITEAINLIKKQDKSKSI 895

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L+    +K A    V  E +    NA +LA+  ++ + GG  GG+ ++ Q  G      
Sbjct: 896 YLLTGETDKVAHGCYVSDEAIAKGINANELAKSVSENI-GGKAGGKGNIVQGMGDKPEGI 954

Query: 886 DQAIAGVASFLKK 898
           + AI  V    K+
Sbjct: 955 NTAIEEVTKLFKE 967


>gi|307187766|gb|EFN72738.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 968

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 330/966 (34%), Positives = 499/966 (51%), Gaps = 110/966 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
           N   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P      
Sbjct: 2   NAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAK 61

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT  
Sbjct: 62  WVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTDV 121

Query: 118 FDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L   RLY+T +  DE      D+E   LW  + G+ A  ++     DNFW M ETGPC
Sbjct: 122 LKLPADRLYVTYFGGDEKNGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGPC 180

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSE+ +D+     GG   +   + +    +EIWNLVF+Q+ +++      LP+  ID 
Sbjct: 181 GPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKSLPRKHIDC 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVD 277
           G+GLER+ +V+Q K  NYD DLF  L  A E+ TG   Y+G       + I + +RV+ D
Sbjct: 237 GLGLERLVSVIQNKRANYDTDLFMPLFAAIEKATGAPSYQGKVGAEDVDGIDMAYRVLAD 296

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336
           H R+ +  +ADG +P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G  
Sbjct: 297 HARTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVDLLGEV 356

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PE+ +    I + +  E+ +F KTL RG  LL+  ++ L   + + GDVA++LYDT+G 
Sbjct: 357 FPEVTKDPQNIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESSDTVPGDVAWRLYDTYGF 416

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   +GL  IDI  +    EE + +A+  S     G  ++I   +   +  T+
Sbjct: 417 PVDLTQLMTEEKGLK-IDIAGY----EESKKQAQLISQNKAGGIDDQINLDI---HAITE 468

Query: 457 FIGYDLLRGSKFMKEDRKVLCQ--------KPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
              + +       K D KV+           P I        IV A+ +    V++  SG
Sbjct: 469 MQEHGIKPTDDSPKYDYKVISSVKYEEYEFAPCI-------GIVIALRRAKTFVDQVTSG 521

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           ++V ++ D+T FYAE GGQ+ D G  +    +   +++ +VQ +A G  +H   V  G L
Sbjct: 522 EEVGILLDKTNFYAEQGGQIYDEGFLVKVDDEATEIRVKNVQVRA-GYVLHIGTVGEGTL 580

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           R    +   +D   RR +  NHSATH L++AL  +LG+   Q GS + PD LRFD T+  
Sbjct: 581 RKGDKVYTNVDTARRRLVMANHSATHALNYALRKVLGTGADQKGSLVAPDRLRFDFTNKG 640

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV--- 681
           P+T+ ++K+ E+   D++ +N  +  +  N   A    G  A+    Y D VRV+S+   
Sbjct: 641 PMTTEQVKNTENITADMVKENKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVISMGIP 700

Query: 682 --EYEDGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731
             + E   + ++AL      CGGTH+  TG I    I SE +I  GIRRI A+TG  A  
Sbjct: 701 VDDLEKNPLSTAALETSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAK 760

Query: 732 --RSHLMGQDEKLKSLASFLKVSQGNV-----VGRVEEIWEE--------YRKLQLIHAK 776
             R+  + Q++ L  L   ++           V ++ E+ EE        +RK  +    
Sbjct: 761 AFRTATLLQNQ-LSHLRETIETDNSGTNSKEYVKKIVELTEEIMHAVIPSWRKDNMRATL 819

Query: 777 RKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLV 828
           ++L+ +++D      A V         S I S V  + L  V++A    K + S +  + 
Sbjct: 820 KELKKSLDDKERAAKAAVANTVVETIQSIIQSRVGCQVLVEVLEAYSNTKALDSALKKIR 879

Query: 829 GISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGG-----------GGGGGRPHMA 875
            +S E  A +LI +  D+   F  ++V  + +S  +              G GGG+P  A
Sbjct: 880 VLSPETSA-LLISIDRDVKKIFALSSVPKSAVSKGLKANEWIQVIAPAMQGKGGGKPESA 938

Query: 876 QSGGPN 881
           Q+ G N
Sbjct: 939 QASGTN 944


>gi|303321650|ref|XP_003070819.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240110516|gb|EER28674.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1023

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 293/772 (37%), Positives = 426/772 (55%), Gaps = 75/772 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 79  VRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 138

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L+
Sbjct: 139 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGLE 198

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D E   LW  + G+  D I+     DNFW M + GPCGPCS
Sbjct: 199 PDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPCS 257

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           E+ +D+     GG   +   + +    +EIWN VF+Q+ ++++     LP   +DTGMG 
Sbjct: 258 EVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGY 313

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +VLQ+K +NYD D+F  L  A  ++TG++ Y G       + I   +RV+ DH+R+
Sbjct: 314 ERLVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRT 373

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 374 LTFAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPE 433

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGL 396
           + + +  + E L  E+  F KTLDRG    + + +   KD     L+G   ++LYDT G 
Sbjct: 434 IKKKQTDVMEILDEEEISFAKTLDRGERQFE-IYAQQAKDSGSNKLHGADVWRLYDTFGF 492

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID + F    EE R +A+  S G     ++ +  S+        
Sbjct: 493 PVDLTQLMAEERGLS-IDNVEF----EEARLKAKEASKGQAKAASDLLKLSV-------- 539

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---SGQKVEV 513
              +DL   SK  K+              N +S IV A+    E V+       G ++ +
Sbjct: 540 ---HDL---SKLEKDKVPKTNDDAKFGRGNILSQIV-AVYHDKEFVDSTSGIPEGDQIGI 592

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + +VQ     +F H   ++ G L    S++
Sbjct: 593 ILDKTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVF-HTGFIKYGNLSVGDSVI 651

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L
Sbjct: 652 SEYDELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDL 711

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED---- 685
           + IE+   + I QN  V ++ +    A   +G  A+ G  Y D VRVVS  VE E+    
Sbjct: 712 EKIEEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKD 771

Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                  GV S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A
Sbjct: 772 VKDPRWKGV-SIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDA 822


>gi|213512300|ref|NP_001133550.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar]
 gi|209154450|gb|ACI33457.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar]
          Length = 967

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 327/974 (33%), Positives = 500/974 (51%), Gaps = 102/974 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  F++FF ++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFIRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A  +A +LLTKE
Sbjct: 66  LKRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACTMALELLTKE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        D D E  ++W  + G+   +II  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHEEAGLDPDLECKQIWLDL-GMDEARIIPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI FD+     GG   +   + +    +EIWNLVF+Q+ ++++ E   LPK SIDT
Sbjct: 185 GPCSEIHFDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQYNRESETELKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    QA ++ TG + Y G       + I + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFIPYFQAIQKGTGARDYTGKVGAEDVDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG  +     L+  +   +G A
Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQKGFFATLVDVVVESLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+E+F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEEQFLKTLSRGRKILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYG 453
           PLD+   I   RG+  +D+ +F    EE++  A+  S G GSG  + I    +++++   
Sbjct: 421 PLDLTALIAEERGMM-VDVAAF----EEEKKAAQVKSQGKGSGDEDHIMLDIYAIEDLRN 475

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                  D L+ S    +  K + ++            V A+ ++   VEE  +GQ+  V
Sbjct: 476 KGIAATDDTLKYSYSADDSGKYVFEQ--------AVGTVLALRRERAFVEEVTTGQECGV 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAI--GDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           + D+T FYAE GGQ  D G  +   D +  R++ T    +  G +V H     G L+   
Sbjct: 528 LLDKTSFYAEQGGQSFDEGYMLREDDSVDDRMEFTVKNTQVRGGYVLHVGTVYGTLKVGD 587

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++L +D   RR +  NH+ATH+L+ AL  +LG    Q GS + PD LRFD T    +++
Sbjct: 588 HVILHVDEARRRPIMSNHTATHILNFALREVLG-EADQRGSLVAPDRLRFDFTAKGALST 646

Query: 630 AELKSIEDNVNDII--AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV------ 681
            E++  E+    +I  A+++  +   +    AI  G  A+    Y D VRVVS+      
Sbjct: 647 EEVRRTEEIACTMIRDAKHVYAMDTPLAAAKAI-QGLRAVFDETYPDPVRVVSIGIPVAD 705

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----- 731
                    G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A     
Sbjct: 706 LLADPSSTAGSLTSIEFCGGTHLRNSGHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAHR 765

Query: 732 -----RSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRKLQLN 782
                R  L    EK+K   +  K  Q  +    E     +  +++K ++  A + L+  
Sbjct: 766 KADALRQSLSALGEKVKVQTAPNKDVQKEIADMTEFLGMAVISQWQKDKMREALKGLKKT 825

Query: 783 VEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++DL     ADV                     +  + S   +K L   +  L+ +    
Sbjct: 826 MDDLDRASKADVQKRVLEKTKEMIDSSPNQPLVVMEMESGASAKALNESLKLLKTQSPQT 885

Query: 824 IIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ML  +  +  K   L  V +D+ +R   A +  +    ++  G GGG+   AQ+ G N
Sbjct: 886 AAMLFTVDHDAGKIVCLCQVPQDVANRGLKASEWVQELCPLM-DGKGGGKDMSAQATGRN 944

Query: 882 GNKADQAIAGVASF 895
            +  ++A+     F
Sbjct: 945 THCIEEALQMANQF 958


>gi|120403625|ref|YP_953454.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|205830159|sp|A1T8E8|SYA_MYCVP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119956443|gb|ABM13448.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 898

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 321/906 (35%), Positives = 475/906 (52%), Gaps = 66/906 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +    +VQK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRAASVQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT       +  D
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVEAGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY +D+EA   W++++GL  ++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERLWATVYLDDDEAIGYWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E  +   +E F     LP+ +IDTGMG+ER+A
Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG------NNIVNHRVIVDHLRSSSFLIAD 288
            +LQ   N Y+ DL +  I   + V G+   G       + V +R+I DH R+++ +I D
Sbjct: 239 CLLQGVDNVYETDLLRPAI---DLVAGIAPRGYGQGVHEDDVRYRIIADHSRTAAIIIGD 295

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +   M  +YPEL      I+
Sbjct: 296 GVSPGNEGRGYVLRRLLRRIIRAAKLLGVDDPIMAELMATVRDAMSPSYPELAADFDRIQ 355

Query: 349 ETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F +TL  G  L D     +     E L+G  AF L+DT+G P+++  ++  
Sbjct: 356 RIAVAEETAFNRTLASGSKLFDDAARATKASGAEKLSGRDAFTLHDTYGFPIELTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              L+ +D   F   + EQR RA+A +        +   +      G T+F G+D L   
Sbjct: 416 EADLS-VDEEGFRALMAEQRQRAKADAAARKQAHADLSAYRELVDAGPTEFTGFDEL--- 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                + ++L     I +      +V    ++G       + ++VE++ D++PFYAE+GG
Sbjct: 472 ---SSEARILG----IFVDGKRVPVVAHTGREG-------AQERVELILDRSPFYAESGG 517

Query: 527 QLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           Q+ D G   G G     +  +TDVQK A+ ++ H   VE G      ++V  +D + R  
Sbjct: 518 QIADEGTVTGTGASETAKAAVTDVQKIAKTLWAHRINVESGEFVEGDTVVAAVDPRWRHG 577

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   IE+  N  
Sbjct: 578 ATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRSQIEEVTNQA 637

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  +  V +     + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+
Sbjct: 638 VEADFEVHSFTTELDKAKAMGAMALFGENYPDEVRVVEI----GGPFSLELCGGTHVRSS 693

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  
Sbjct: 694 AQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVAT 753

Query: 763 IWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDAL 816
           + E+ R  +     L  A  +           +I DV  ++  +   +   +L+S++  +
Sbjct: 754 LVEKLRAAEKELDRLRLAGARSAAVNAAAGAEQIGDVRLVAQRMAGGISGADLRSLVGEI 813

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG---GGGGGRPH 873
           + K+ S   ++  I++    SV  VV  +   +   V    L  KV+G    G GGG+  
Sbjct: 814 RGKLGSDPAVVALIAEGDNDSVPFVVAVNPAAQDRGVRADEL-VKVMGAAVNGRGGGKAD 872

Query: 874 MAQSGG 879
           +AQ  G
Sbjct: 873 LAQGSG 878


>gi|108804197|ref|YP_644134.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|122381811|sp|Q1AWA6|SYA_RUBXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108765440|gb|ABG04322.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 882

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 322/920 (35%), Positives = 483/920 (52%), Gaps = 77/920 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL+FF +  H + PSSSLIP +DPT++ T +G+  F   F GQEKP +    +V
Sbjct: 7   AEIRRRFLDFFAERDHRIYPSSSLIPHDDPTVLLTTAGVQQFIPYFLGQEKPPHPRAASV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC R      DL+ VG  + H TFFEMLGNFSFG YFK+ AI  AW+ LT+   +   R
Sbjct: 67  QKCFRT----QDLEEVGDPS-HLTFFEMLGNFSFGDYFKKEAIGWAWEFLTEGLGIPPER 121

Query: 125 LYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177
           L++T+++ DE      EA + W ++ G+   KI  +  ++N+W  A ETGPCGPCSEI++
Sbjct: 122 LWVTIFEGDENAPEDLEAKRFWMEV-GVPEHKIFGLPKSENWWGPAGETGPCGPCSEIYY 180

Query: 178 DQGECI-PGGL-------PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D GE   PG         PG  E   R++E+WNLVF Q+EQ        L +  IDTGMG
Sbjct: 181 DYGEEFGPGDPLEDARYGPGGEEGDARFLEVWNLVFNQYEQLRDGSLRPLEQTGIDTGMG 240

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIA 287
           LER+A V+Q   + Y+ DL+  +I+ + + TG+        +   R++ DH R  +FLIA
Sbjct: 241 LERIAAVMQGARSVYETDLYAPVIERAREYTGVALGDGEETDRALRILADHARGMAFLIA 300

Query: 288 DGILPANEGRGYVLRRIMRRAM--CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           DG+ P N+ R YVLRRI+RRA    Y R  G     +  L   +   MG  + EL +A+ 
Sbjct: 301 DGVRPGNQRREYVLRRIIRRATREAYGRF-GLDAGRIASLAETVADYMGGFWGELREARD 359

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            I   + SE  RF      G+ LL+  +S L +     G+VAF L+DT+G P+++ +++L
Sbjct: 360 EIRRVVESEAARFIDIYHSGMRLLEAEISRL-EGGRFPGEVAFTLHDTYGFPVEVTREVL 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG++ +D   F +A+E QR RAR    G      E+   + +++   ++F+GY+    
Sbjct: 419 AERGIS-LDEAGFRRAMERQRERAREALEG-----HERAVAAFRDREIRSRFVGYER--- 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
               + + ++L  +P  D              +GE+           +V ++ PFYA  G
Sbjct: 470 ---EQAETRILAIEPVPD-------------AEGELY----------LVLEENPFYATGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG    +  +L++ D     +   V  A VERG       +V +I+   R+Q+  
Sbjct: 504 GQVADTGWISSEKGQLEVVDAIPAGD-YQVLRARVERGRFEAGDEVVASINRVRRQQIEA 562

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATH+LH AL  +LG  V Q GS + PD LRFD  +S  +T  EL  +++     I +
Sbjct: 563 NHTATHILHWALRAVLGKEVVQAGSYVGPDRLRFDYRYSGRVTEEELARVQELCLLKITE 622

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N PV       E+A   GA  L G KY + VRVV V   DG   S  LCGGTHV  T EI
Sbjct: 623 NQPVRYYTTTLEEARKLGAIMLFGEKYGELVRVVEV---DG--FSRELCGGTHVRGTAEI 677

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ----GNVVGRV- 760
               I S     A + RIE ITG+ A  +L    E  + LA+ L++         V R+ 
Sbjct: 678 GAFKITSNRRHGADLYRIEVITGREALYYLTRAAETAERLAAELRLPGVEELPEAVSRLR 737

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           EE+ +   +L+    KR L+  V  L  +   I     ++  ++  D ++L+ + D ++ 
Sbjct: 738 EELQQAREELRQQALKRGLE-EVGSLVENAESIDGTKVVTGRVAAADVRDLRQISDDVRN 796

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++   + +++    + KA ++     ++  R  A D+ R +A +LGGGGGG  P MAQ+G
Sbjct: 797 RVGGPVAVVLAADLDGKAVLVANFHPEVSKRVKAGDVVREAAGILGGGGGGS-PTMAQAG 855

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      A+  V   L +
Sbjct: 856 GGNLEAIPAALERVRQILSR 875


>gi|190407630|gb|EDV10897.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|207340860|gb|EDZ69081.1| YOR335Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149812|emb|CAY86616.1| Ala1p [Saccharomyces cerevisiae EC1118]
 gi|323352223|gb|EGA84760.1| Ala1p [Saccharomyces cerevisiae VL3]
          Length = 958

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|256272535|gb|EEU07514.1| Ala1p [Saccharomyces cerevisiae JAY291]
          Length = 958

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|6324911|ref|NP_014980.1| Ala1p [Saccharomyces cerevisiae S288c]
 gi|1163069|emb|CAA89980.1| ALA1 [Saccharomyces cerevisiae]
 gi|1420729|emb|CAA99658.1| ALA1 [Saccharomyces cerevisiae]
 gi|285815203|tpg|DAA11096.1| TPA: Ala1p [Saccharomyces cerevisiae S288c]
          Length = 958

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|151945412|gb|EDN63655.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 958

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDENLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|118617374|ref|YP_905706.1| alanyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|205830158|sp|A0PPG6|SYA_MYCUA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118569484|gb|ABL04235.1| alanyl-tRNA synthetase AlaS [Mycobacterium ulcerans Agy99]
          Length = 901

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 326/907 (35%), Positives = 482/907 (53%), Gaps = 66/907 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             +L+ TVY +D+EA  LW++++GL AD+I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
           +  P G P  +E+  RY+EIWNLVFMQ E+     K++  IL   P+ +IDTGMG+ER+A
Sbjct: 181 DYGPEGGPVVNED--RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--VNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I          Y +GN+   V +R+I DH R+++ LIADG+ 
Sbjct: 239 LILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIADGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LL     ++  L+  +   MG +YPEL      I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDSDRINRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLASGSRLFDEVAGATRSSGVSVVSGSDAFTLHDTYGFPIELTLEMASEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D   F + + +QR RA+A +        +   +      G T+F G+D L     +
Sbjct: 419 LT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTSEARI 477

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                         L   V      +V  G    +AV   +VE+V D+TP YAE+GGQ+ 
Sbjct: 478 --------------LGIFVDGKRVPVVAHG----QAVDADRVELVLDRTPLYAESGGQIA 519

Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   G G     R  +TDVQK A+ +++H   VE G       +V   D   R+  + 
Sbjct: 520 DVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAADAGWRKGATQ 579

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE+  N  +  
Sbjct: 580 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIEEVTNQAVQA 639

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     E A A GA AL G  Y D VRVV +    GG  S  LCGGTHV+++ +I
Sbjct: 640 DFAVHTFTEQLEKAKAMGAMALFGECYPDEVRVVEI----GGPFSIELCGGTHVATSAQI 695

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 696 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVASLVE 755

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQKK 819
             +  +    + +L               +I +V  ++  + SE+   +L++++  ++ K
Sbjct: 756 RLKAAEKELERARLASVRAAAVNAAAGAERIGNVRLVAQRMSSEMTPADLRTLVGDIRGK 815

Query: 820 IQSG---IIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLAR-LSAKVLGGGGGGGRP 872
           + S    + ++   +  + ++V  VV  +   +     A +L + L+A V   G GGG+ 
Sbjct: 816 LGSDPAVVALIAAPAGGESSTVPYVVAANQAAQGLGLGANELIKHLAAAV--DGRGGGKA 873

Query: 873 HMAQSGG 879
            +AQ  G
Sbjct: 874 DLAQGSG 880


>gi|313104284|sp|P40825|SYA_YEAST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
          Length = 983

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 36  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 95

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 96  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 155

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 156 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 214

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 215 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 270

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 271 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 330

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 331 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 390

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 391 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 450

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 451 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 502

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 503 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 548

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 549 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 607

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 608 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 667

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 668 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 727

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 728 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 781


>gi|170092939|ref|XP_001877691.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647550|gb|EDR11794.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 955

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 324/970 (33%), Positives = 495/970 (51%), Gaps = 109/970 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
           + +R  F  FF+   H  +PSS  IP +DPTL+F N+GM  +K+IF G   P       +
Sbjct: 13  ARVREEFFNFFRSKNHTFVPSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSDMSRLK 72

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLT  + 
Sbjct: 73  RAFNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTDVYK 132

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T ++ D         EA + W    G+  D I+     DNFW M  TGPCGP
Sbjct: 133 LPKDRLYVTYFEGDPNNGLEPDLEAKQYWLD-QGVDEDHILPGNAKDNFWEMGATGPCGP 191

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI FD+     GG   +   +++    +EIWN VF+QF +++      LP   +DTGM
Sbjct: 192 CTEIHFDR----VGGRNAAHLVNQDDPDVLEIWNNVFIQFNREDNGSLKPLPSKHVDTGM 247

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHL 279
           G ER+ +++Q+K +NYD D+F  +     ++TG++ YEG    +        +RV+ DH+
Sbjct: 248 GFERLVSIVQDKRSNYDTDVFLPIFDKIRELTGVRPYEGRFDADDVDGIDTAYRVVADHI 307

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAY 337
           R+ +F ++DG +P N GRGYVLRRI+RR   YAR  LG         LLP +   MG+ +
Sbjct: 308 RTLTFALSDGGIPNNVGRGYVLRRILRRGARYARKKLGVKIGCFFSSLLPVVVETMGAVF 367

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395
           PE+ +    I+E L  E+E F +TLDRG  L D   +   +  +  LNG   ++LYDT G
Sbjct: 368 PEITRKVDDIKEILDEEEESFSRTLDRGEKLFDQFATRAKEQGLKELNGRDVWRLYDTFG 427

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL G++   F +A    +  ++A S  +G                 T
Sbjct: 428 FPVDLTRLMAEELGL-GVNDQEFEEAQAWSKEASKASSKQVG-----------------T 469

Query: 456 QFIGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIV------QQGEIVEEAVSG 508
             +  D+   +   K+ D          +L N + ++VKAI       Q  +I+ E   G
Sbjct: 470 SIVKLDVHDTAALEKDTDIPKTDDSAKFNLGN-IRALVKAIFYEKSFPQSTDIMPE---G 525

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRT 567
               ++ D+T FYAEAGGQ  DTG  + DG+   ++T+VQ    G  +H   ++ G L  
Sbjct: 526 ATFGIILDKTSFYAEAGGQEYDTGNIVIDGVADFEVTNVQS-YNGYVLHTGHLKYGQLAV 584

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              ++ + D   R  L  NH+ATH+L+  L  +LG H+ Q GS + P  LRFD +H   I
Sbjct: 585 GKEVISSYDELRRWPLRNNHTATHILNFCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQI 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686
           + +EL  IE    D I +N+ V ++ +  E A    G  A+ G  Y D VRVV++EY+  
Sbjct: 645 SHSELSRIEATSVDWIKRNVKVFSKDLELETASKIPGLRAVFGESYPDPVRVVTLEYDVD 704

Query: 687 GVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH- 734
            +            S   CGGTHV+ TG+I    I  ES I  GIRRI AITG  A S  
Sbjct: 705 EIAKDIENPKWRRTSVEFCGGTHVARTGDIKDFIITEESGIAKGIRRIVAITGHEAHSAA 764

Query: 735 -----LMGQDEKLKSLA--------SFLKVSQGNVVGRVEEIWEEYRKLQLIH------- 774
                L G+ E++ SL           L +  G     V +  E   +L +I        
Sbjct: 765 RHALLLQGRLEQIDSLTGKNKDAALKALSIELGQADISVLKKAELRDRLAVIRKAVDKQV 824

Query: 775 AKRKLQLNVEDLSC---HKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLV 828
            +R+  +N E +     H   +    ++I S   + ++K L++V+ +  +K+Q  + +  
Sbjct: 825 KEREAVVNREAIDTIQRHFNDNEKAETYIASLNVDGNAKILQAVI-SQGRKLQKAVYLFS 883

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKAD 886
              +    + +  V  +   +    D    ++KV+G  GG  GG+   AQ  G +G++ D
Sbjct: 884 VDPESNTVAHVNYVPPEF--KTKGADARTWASKVVGILGGKAGGKEDSAQGVGSDGHRLD 941

Query: 887 QAIAGVASFL 896
           +A+     ++
Sbjct: 942 EALVAAQLYV 951


>gi|91084029|ref|XP_966465.1| PREDICTED: similar to alanyl-tRNA synthetase [Tribolium castaneum]
 gi|270006700|gb|EFA03148.1| hypothetical protein TcasGA2_TC013061 [Tribolium castaneum]
          Length = 965

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 290/781 (37%), Positives = 429/781 (54%), Gaps = 78/781 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  ++ FF++  H+ + SSS IP +DPTL+FTN+GM  FK IF G   P      + +A
Sbjct: 10  VRNAYINFFKEKNHDYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTVDPNSDLAKLTRA 69

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V + QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LTK   L
Sbjct: 70  VNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTKRLHL 128

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +        + D E  ++W  + G+    ++  +  DNFW M ETGPCGPC
Sbjct: 129 PGDRLYVTYFGGDKAAGLEPDNECKQIWLGL-GVPESHVLPGSMKDNFWEMGETGPCGPC 187

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           SE+ FD+  G  +P  +   +++    +EIWNLVF+Q+ +++      LPK  ID G+GL
Sbjct: 188 SELHFDRIGGRDVPELV---NQDDPDVLEIWNLVFIQYNRESDGSLKFLPKKHIDCGLGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +++Q K +NYD DLF  L  A ++ TG    G  I         + +RV+ DH R+
Sbjct: 245 ERLVSIMQNKRSNYDTDLFLPLFDAIQKGTGAPPYGGKIGDADKDGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPEL 340
            +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L     E +G  +PE+
Sbjct: 305 ITIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFSTLVNTVVEILGDTFPEV 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +    I +T+  E+E+F KTL RG  LL+  ++ LG  + L GDVA++LYDT+G P+D+
Sbjct: 365 CKDPQSIIDTINEEEEQFLKTLSRGRNLLNRTITKLGDSKTLPGDVAWRLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG- 459
            Q +   +GL  +D+  +    EE +  A+  S G GSG  + I   +       Q +G 
Sbjct: 425 TQLMAEEKGL-NVDMAVY----EESKKLAQIASQGKGSGVEDTINLDV-HAITELQNLGV 478

Query: 460 --------YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
                   Y+ + GS   +E +  LC            S V A+    + VE+  +GQ+ 
Sbjct: 479 PPTDDAPKYNYIAGSGINEEYKFELCH-----------STVIALRHNKQFVEQVHTGQEC 527

Query: 512 EVVFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            ++ D+T FYAE GGQ+ DTG    IGD  +   + +VQ +  G  +H   +E G L+  
Sbjct: 528 GILLDKTNFYAEQGGQIYDTGYIVKIGDESVEFSVKNVQVRG-GYVIHIGSLE-GTLKKG 585

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D   RR +  NH+ TH+L++AL  +LG+   Q GS + PD LRFD T+   +T
Sbjct: 586 DKVALHVDSARRRLIMNNHTGTHVLNYALRKVLGTEADQRGSLVAPDRLRFDFTNKGAMT 645

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV---- 681
             ++K+ E N  ++I++N  V  +  N   A+A    G  A+    Y D VR+VS+    
Sbjct: 646 VDQVKNTELNSKELISRNDQVFAKESNL--AVAKTIRGLRAVFEETYPDPVRIVSIGIPV 703

Query: 682 ------EYEDGGVHSS-ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                  +   G ++S   CGGTH+  +G I    I SE +I  GIRRI A+TG  A   
Sbjct: 704 EKLEVDPFGPAGDNTSIEFCGGTHLKYSGHIGDFVIASEEAIAKGIRRIVALTGPEATKA 763

Query: 735 L 735
           L
Sbjct: 764 L 764


>gi|45188236|ref|NP_984459.1| ADR363Cp [Ashbya gossypii ATCC 10895]
 gi|44983080|gb|AAS52283.1| ADR363Cp [Ashbya gossypii ATCC 10895]
          Length = 956

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 289/771 (37%), Positives = 422/771 (54%), Gaps = 72/771 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59
           ++R+TF+++F+   H+L+PSS +IP +DPTL+F N+GM  FK IF G   P      + +
Sbjct: 13  NVRSTFIDYFKAKDHKLVPSSPVIPYDDPTLLFANAGMNQFKPIFLGMVDPASDFYTLKR 72

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           AV T QKC+RAGGKHNDL++VG  + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + 
Sbjct: 73  AVNT-QKCIRAGGKHNDLEDVGLDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTKVYG 131

Query: 120 LDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T +  DE      DEEA  LW  + G++ D +I     DNFW M + GPCGP
Sbjct: 132 LPEDRLYVTYFEGDESLGLAADEEARDLWLSV-GVAPDHVIAANVKDNFWEMGDQGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSE+ FD+     GG   ++   ++    IEIWN VF+QF +++      LP   +DTGM
Sbjct: 191 CSEVHFDR----IGGRNAAALVNQDDPNVIEIWNNVFIQFNREHDGSLRPLPAKHVDTGM 246

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHL 279
           G ER+ +VLQ+  +NYD D+F+ L    +++TG++ Y G    +        +RV+ DH+
Sbjct: 247 GFERLVSVLQDVPSNYDTDVFQPLFARIQEITGVRPYSGKFGADDKDGIDTAYRVLADHV 306

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGY-TEPLMMHLLPALCTEMGSAY 337
           R+ +  +ADG +P N+GRGYVLRRI+RR   Y R  + Y T      L P L  +    Y
Sbjct: 307 RTLTIALADGGVPDNDGRGYVLRRILRRGARYVRKYMNYPTGKFFSQLAPTLIEQFKDVY 366

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTH 394
           PEL + +  + + L  E+  F KTLDRG  L +   +   K+   +IL+G   ++LYDT+
Sbjct: 367 PELTKNQSYLFDILDEEEASFAKTLDRGEKLFEK-YAETAKNSGSKILDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ Q +    GL  +D   F QA +E    ++ +      G    I  ++ E    
Sbjct: 426 GFPVDLTQLMADEHGLK-VDNEGFEQAKQESYEASKKNG---SKGDANLIKLNVHE---V 478

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEV 513
           +Q     + R     K              T  + + +  I      VE+    G++  +
Sbjct: 479 SQLSDEGVPRTDDSAKYG------------TQDIEATILRIHDGENFVEQMTEVGKQYGI 526

Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  D G   I D     + +VQ+ +  +F H   +  G L     ++
Sbjct: 527 LLDRTCFYAEQGGQEYDKGKLVIDDAAEFNVDNVQQYSGYVF-HTGNLADGKLCVGDKII 585

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + D   R  +  NH+ THLL+HAL TILG ++ Q GS +TP+ LRFD +H KP++  EL
Sbjct: 586 ASYDELRRYPIRNNHTGTHLLNHALRTILGDNIDQRGSLVTPEKLRFDFSHKKPMSYEEL 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681
           + +E   N  I +N  V  + +  + A +     A+ G  Y D VRVVSV          
Sbjct: 646 EQVETICNQQIRENRSVYYKDIPLDVAKSIHSIRAVFGETYPDPVRVVSVGKSVDEILES 705

Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              E+   +S  LCGGTHVS TG+I    I+ ES I  GIRRI A++   A
Sbjct: 706 PSNEEWAKYSIELCGGTHVSKTGDIKEFVIIEESGIAKGIRRIVAVSASEA 756


>gi|183982183|ref|YP_001850474.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M]
 gi|205830153|sp|B2HNC1|SYA_MYCMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|183175509|gb|ACC40619.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M]
          Length = 901

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 326/916 (35%), Positives = 483/916 (52%), Gaps = 64/916 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             +L+ TVY +D+EA  LW++++GL AD+I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
           +  P G P  +E+  RY+EIWNLVFMQ E+     K++  IL   P+ +IDTGMG+ER+A
Sbjct: 181 DYGPEGGPVVNED--RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGVERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--VNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I          Y +GN+   V +R+I DH R+++ LIADG+ 
Sbjct: 239 LILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIADGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LL     ++  L+  +   MG +YPEL      I    
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDFDRINRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++    G
Sbjct: 359 VAEETAFNRTLASGSRLFDEVAGTTRSSGVSVVSGSDAFTLHDTYGFPIELTLEMASEAG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D   F + + +QR RA+A +        +   +      G T+F G+D L     +
Sbjct: 419 LT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTSEARI 477

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                         L   V      +V  G    +AV   +VE+V D+TP YAE+GGQ+ 
Sbjct: 478 --------------LGIFVDGKRVPVVAHG----QAVDADRVELVLDRTPLYAESGGQIA 519

Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           D G   G G     R  +TDVQK A+ +++H   VE G       +V   D   R+  + 
Sbjct: 520 DVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAADAGWRKGATQ 579

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE+  N  +  
Sbjct: 580 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIEEVTNQAVQA 639

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T     E A A GA AL G  Y D VRVV +    GG  S  LCGGTHV+++ +I
Sbjct: 640 DFAVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSIELCGGTHVATSAQI 695

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E
Sbjct: 696 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVASLVE 755

Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQKK 819
             +  +    + +L               +I +V  ++  + SE+   +L++++  ++ K
Sbjct: 756 RLKAAEKELERARLASVRAAAVNAAAGAERIGNVWLVAQRMSSEMTPADLRTLVGDIRGK 815

Query: 820 IQSG---IIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPH 873
           + S    + ++   +  + ++V  VV  +   +     A +L +  A  +  G GGG+  
Sbjct: 816 LGSDPAVVALIAAPAGGESSTVPYVVAANRAAQGLGLGANELIKHLATAV-DGRGGGKAD 874

Query: 874 MAQSGGPNGNKADQAI 889
           +AQ  G      D A+
Sbjct: 875 LAQGSGKKPAGIDAAL 890


>gi|323307226|gb|EGA60508.1| Ala1p [Saccharomyces cerevisiae FostersO]
          Length = 833

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|227496182|ref|ZP_03926488.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834265|gb|EEH66648.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 904

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 330/949 (34%), Positives = 502/949 (52%), Gaps = 105/949 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR+ +L++F   GHE+ PS SL+   +P+++FT +GMVPF     G E+  +    +
Sbjct: 3   TSEIRSRWLDYFASQGHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEQAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118
           VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI  AWDLLT      ++
Sbjct: 62  VQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAISYAWDLLTGPQSEGKY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T++++DE ++    K+ G+    + ++   +  WS  + GP G C EI +D
Sbjct: 118 GLDGDRLWMTIWEKDEVSWNHLTKVIGVPQQHVQKLPFEEISWSTGQPGPAGACCEIHYD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232
           +G +  P G P +  +G+R++EIWNLVF +F   E +      +  L + +IDTG GLER
Sbjct: 178 RGAQYGPDGGPVADAQGDRFLEIWNLVFDEFLRGEGEGHDFELVGKLDQTAIDTGAGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281
           +A ++Q+K N Y+ID    +I A+E ++G KY              + V  RV+ DH+RS
Sbjct: 238 LAFIMQDKPNMYEIDEVYPVIAAAEAMSGKKYGLGAAGPSAGQAYEDDVRMRVVADHVRS 297

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI DG+ P N+GRGYVLRR++RRA+   RLLG  +  M  LL A    M  +YPEL 
Sbjct: 298 ALMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVQDAAMPTLLTASKDVMKLSYPELE 357

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTH 394
                I E   +E++ F +TL  G  +LD  ++         G   ++ G VAF+L+DT 
Sbjct: 358 TGWAQISEVAYAEEDAFRRTLAAGTTILDTAVAAAKEKAKDSGTKPVVPGSVAFELHDTS 417

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-- 452
           G P+D+  ++   +G+  +D ++F   + EQ+ RARA +    +G  +   F   EK   
Sbjct: 418 GFPIDLTLEMAAEQGVE-VDELAFRNLMAEQKERARADARAKKAGHADIRAFQEIEKAMG 476

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           G + F+GY                         +   ++V  ++  G       +  +VE
Sbjct: 477 GGSTFLGY-----------------------TESSAEAVVTGLLVDGVPQPAVTAPAEVE 513

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV------QKKAEGIFVHHAIVERGILR 566
           VV D+TPFYAE GGQL D G      IRL    V      Q    G+ VH   +  G + 
Sbjct: 514 VVLDRTPFYAEMGGQLADQGV-----IRLADGGVVEVVDVQAPIRGLSVHRGRLTEGTIA 568

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
                   ID   R  ++  H+ATH+++  L  ++  H  Q GS  +P  LRFD  H   
Sbjct: 569 LGERAYAEIDSARRLAIARAHTATHMVYAGLRQVVNEHADQAGSENSPSRLRFDFRHGSA 628

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +++ ++  IE  VND +AQ+L V T +M+ ++A  +GA AL G KY   VRVV++    G
Sbjct: 629 LSAGQVGDIEALVNDKLAQDLTVRTDVMSLDEARQAGAIALFGEKYGTEVRVVTI----G 684

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                 LCGGTHV STG I  + ++ ESSI +G+RRI+A+ G  A       D + K  A
Sbjct: 685 DGFDKELCGGTHVPSTGHIGRVAVLGESSIGSGVRRIDALVGDGA------YDFQAKEHA 738

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN--------- 795
              +V+   V GR +E+ E    L  +L  A++KL    +     K A+V          
Sbjct: 739 LVSQVT-AIVGGRSDELPERIASLMTRLKEAEKKLAAAEQAAMVAKAAEVVDSAERVGGY 797

Query: 796 -FMSHIISEVDSKE-LKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDR- 849
              S  +  V S + L+S++  +++++  G   ++ + G+S E+    L++V  +   R 
Sbjct: 798 LLASANLGSVGSADALRSLVLDVRQRLGEGEPAVVAVGGVSGERP---LVIVATNGAARD 854

Query: 850 --FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               A DL R++AK L GGGGGG+P +AQ GG +    D+A+  ++  L
Sbjct: 855 LGAKAGDLVRVAAKTL-GGGGGGKPDLAQGGGQDAAALDEALRALSHAL 902


>gi|229820505|ref|YP_002882031.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566418|gb|ACQ80269.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 896

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 302/803 (37%), Positives = 455/803 (56%), Gaps = 74/803 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L++F +  H ++PS+SLI   DP+++FT +GMVPF     G E+  Y    +V
Sbjct: 4   AEIRRRYLDYFAERDHTVVPSASLISA-DPSILFTIAGMVPFIPYIVGTEQAPYSRAVSV 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119
           QKC+R     ND++ VGRT RH TFF+M GNFSFG YFKE A++ AW+L+T       F 
Sbjct: 63  QKCIRT----NDIEEVGRTTRHGTFFQMNGNFSFGDYFKEGAVEFAWELMTSSQDDGGFG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD   L++TV++ED E  ++ +++    A++++ ++  D+FW   + GP GP +E   D+
Sbjct: 119 LDPDLLWVTVWEEDAETARVLREVIDFPAERVVPLSRADSFWDTGQPGPAGPTAEWHLDR 178

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI--LPKMSIDTGMGLERM 233
           G +  P G P     G+RY+E WNLVF +F +     K    +  LP  SIDTGMGLER+
Sbjct: 179 GADRGPDGGPAVDTAGDRYVEFWNLVFDEFLRGPGPGKDYPLLGELPMKSIDTGMGLERV 238

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A +LQ K N Y+ID    +I  +E+++G +Y  +  + V  RV+ DH+RS+  L++DG+ 
Sbjct: 239 AAILQGKDNIYEIDEVFGVIARAEELSGRRYGASREDDVRMRVVADHVRSAMMLVSDGVK 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RR++   RLLG T+P +  LLP     M ++YPEL      I   +
Sbjct: 299 PSNEGRGYVLRRLLRRSVRAMRLLGVTDPALPELLPVSKDVMKASYPELEADFGRISTIV 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E++ F +TL  G  +LD  +  L +     L G+ AF L+DT+G P+D+  ++   +G
Sbjct: 359 YDEEDAFRRTLTSGTTILDTAVRRLKESGGSQLGGEQAFALHDTYGFPIDLTLEMAAEQG 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRGSK 467
           ++ +D  +F + + EQR+RARA +L   SG  +  ++  +     A   F+GY       
Sbjct: 419 VS-VDEEAFRRLMGEQRARARADALAKRSGHADTSVYRDIAGSLPAPVSFLGY------- 470

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSI-VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                            T+  + + V  ++  G     A +  +VEVV D+TPFYAEAGG
Sbjct: 471 -----------------TDAEARVAVVGLLVDGVPAPAAQAPAEVEVVLDRTPFYAEAGG 513

Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G   + DG  +++ DVQ   +G+ VH   +  G+L    S V +ID   RR ++ 
Sbjct: 514 QLADQGQIVLDDGAVVEVDDVQAPIKGLSVHRGRLVEGVLGLGSSGVASIDTARRRAIAR 573

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ATH++H A+   +G   +Q GS   P   RFD      + SA L  I   VN ++A 
Sbjct: 574 AHTATHMVHKAIREHVGESATQAGSENAPSRFRFDFRSGSALPSAALAEINARVNTLLAD 633

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V   +M  +DA A+GA AL G KY DRVRVVS+    GG  S  LC GTHV+STG +
Sbjct: 634 DLDVTDEVMALDDARAAGAMALFGEKYGDRVRVVSI----GGDWSKELCAGTHVASTGHL 689

Query: 706 MLLYIVSESSIRAGIRRIEAITGQ-----RARSH-LMGQDEKLKSLASFLKVSQGNVVGR 759
            L+ ++ ESSI +G+RR++A+ G      +A+ H L+GQ  +L             V  R
Sbjct: 690 GLVTLLGESSIGSGVRRVDALVGDGAFGYQAKEHALVGQLTQL-------------VGAR 736

Query: 760 VEEIWEEYRKL--QLIHAKRKLQ 780
            EE+ E    L  +L  A+R++Q
Sbjct: 737 GEELPERVSSLMTRLKEAEREIQ 759


>gi|323303022|gb|EGA56826.1| Ala1p [Saccharomyces cerevisiae FostersB]
          Length = 810

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|326434145|gb|EGD79715.1| alanyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 955

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 287/774 (37%), Positives = 421/774 (54%), Gaps = 71/774 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  F+ +F++ GH+  PSSS IP NDPTL+F N+GM  +K  F G +        + +A
Sbjct: 13  VRGKFISYFEERGHKFWPSSSTIPFNDPTLLFANAGMNQYKAKFLGTDSKDTDLGKLTRA 72

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y+KE AI  +WDLLT  F L
Sbjct: 73  VNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYWKEEAIDFSWDLLTNVFQL 131

Query: 121 DQRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D  RLYIT ++       DEE   LW K   +  ++I+     DNFW M ETGPCGPC+E
Sbjct: 132 DPNRLYITYFEGDSVVPADEETRSLWMK--HVPPERILPFDRKDNFWEMGETGPCGPCTE 189

Query: 175 IFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           I +D+     GG   S   + +    +EIWNLVFMQ+  +       LP   +DTGMGLE
Sbjct: 190 IHYDR----IGGRDASHLVNMDDPDVLEIWNLVFMQYNNEGNGVLKTLPAQHVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG------NNIVN--HRVIVDHLRSS 282
           R+ +VLQ KT+NYD DLF  +  A ++  G + Y G       ++V+  +RV+ DH+R+ 
Sbjct: 246 RILSVLQNKTSNYDTDLFLPIFAAIKEKCGCREYTGKVNEADTDMVDTAYRVVADHIRTL 305

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341
              IADG  P  +GRGY+LR ++RRA+ +    LG  E     L+P +   +G A+PEL 
Sbjct: 306 CIAIADGGRPDKDGRGYILRLVLRRAIRFCEEYLGAPEYFFASLVPVVVDVLGDAFPELR 365

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +        L+ E+ +F +TL RG       ++ +G+D +++GD A++L+DT+G P+ + 
Sbjct: 366 KDPEETIAVLKEEERQFRRTLSRGRRYFKRAVAAVGEDGVIDGDTAWRLWDTYGFPIHLT 425

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----EKYGATQF 457
             +   RGL  +D+  F  A      +ARA  +    G   +    L     ++      
Sbjct: 426 IVMAEERGLK-VDMDGFEAA------KARAVEISRAGGAAGETNLDLDVNTLDELKKKGV 478

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE----- 512
            G D      + ++      +      ++   +++  + ++G +V+     +  E     
Sbjct: 479 PGTDDAAKYAYTRD------ENGSYSFSDAEGTVLALLTEEGGLVDRVSVSEDDEELPVG 532

Query: 513 VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           VV D+T FYAE GGQ+ DTG      G  + L + +VQK+     +H A + +G L+   
Sbjct: 533 VVLDKTNFYAEQGGQIYDTGRFESTTGAPLELDVFNVQKRG-AYCLHVATLAQGELKVGD 591

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L L  D+  RR    NH+ATH+L++AL ++LG    Q GS + P+ LRFD T  K +T 
Sbjct: 592 KLTLKFDHDRRRPCMSNHTATHVLNYALRSVLG-EADQKGSLVEPERLRFDFTAKKGMTP 650

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-DGG 687
            +LK  E+ VN I+  N  V  +      A A +G  A+ G  Y D VRV+SV    D  
Sbjct: 651 EQLKQTEEVVNKIVNANYTVYDKDTPLAQARAINGLRAMFGETYPDPVRVLSVGASIDDM 710

Query: 688 V----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           V          +S   CGGTHV ++G+I    I+SE ++  GIRRI A+TGQ A
Sbjct: 711 VADPAASYAVDYSVEFCGGTHVKNSGDIGPFTILSEEAVAKGIRRIVAVTGQEA 764


>gi|323335374|gb|EGA76661.1| Ala1p [Saccharomyces cerevisiae Vin13]
 gi|323346372|gb|EGA80661.1| Ala1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 958

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 286/774 (36%), Positives = 416/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+ 
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKX 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|315092869|gb|EFT64845.1| alanyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
          Length = 892

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 315/926 (34%), Positives = 481/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD   V +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S    +G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRAFGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VEVV  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPT 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLATDLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|121719583|ref|XP_001276490.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119404702|gb|EAW15064.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 961

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 295/783 (37%), Positives = 427/783 (54%), Gaps = 96/783 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL+FF+KNGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 16  VRDTFLDFFRKNGHTFVPSSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFARLKSA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + +D
Sbjct: 76  VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGID 135

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY+T +        + D EA  LW  + G+  D I+     DNFW M + GPCGPCS
Sbjct: 136 PQRLYVTYFEGHEEGGLEPDLEAKALWTAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 194

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   S   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 195 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNRETDRTLRPLPNKHVDTGMGF 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +VLQ+K++NYD D+F  L  A + +TG + Y G       + I   +RV+ DH+R+
Sbjct: 251 ERLVSVLQDKSSNYDTDVFSPLFGAIKDITGAREYRGMFGSGDADGIDTAYRVVADHVRT 310

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG+ P ++GRGYV+RR++RR   YAR     E       L+P L  ++G  +PE
Sbjct: 311 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKLVPILVDQLGEMFPE 370

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGL 396
           L + +  + E L  E+  F KTLDRG    +         G D++   DV ++LYDT G 
Sbjct: 371 LRKKQQDVMEILDEEEISFAKTLDRGERQFESYAQQAKLKGNDKLHGADV-WRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID   F    EE R +A+  S G              +K  AT 
Sbjct: 430 PVDLTRLMAEERGLK-IDDTEF----EEARLKAKEASKG--------------QKKSATD 470

Query: 457 FIGYDLLRGSKFMK-EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV--EEAV--SGQKV 511
            +  D+    K  K  D          ++ N +++ VKAI   G++   + AV  +G+++
Sbjct: 471 TVKLDVHDLGKLEKMNDVPKTDDSFKFEMCN-INAEVKAIY-HGKVFHSDTAVISAGEQI 528

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ  D G  I DG   L+++DVQ  A G  +H   ++ G      +
Sbjct: 529 GIILDRTNFYAEQGGQENDIGRIIIDGKAELEVSDVQLYA-GYVLHTGFMKYGSFSVGDT 587

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  
Sbjct: 588 VLCEYDELRRWPIRNNHTGTHILNFALKRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEK 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND--------------- 674
           EL+ IED   + I QN  V ++ +    A   +G  A+ G  Y D               
Sbjct: 648 ELERIEDISTEYIRQNCDVYSQEVPLATARQITGVRAVFGETYPDPVRVVSVGVEVEEIL 707

Query: 675 ------RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                 R   VS+E+          CGGTHV  TG+I  L I+ ES I  GIRRI A+TG
Sbjct: 708 QNVKDPRWNEVSIEF----------CGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTG 757

Query: 729 QRA 731
           + A
Sbjct: 758 EDA 760


>gi|218184221|gb|EEC66648.1| hypothetical protein OsI_32912 [Oryza sativa Indica Group]
          Length = 953

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 294/773 (38%), Positives = 405/773 (52%), Gaps = 72/773 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P      +
Sbjct: 9   ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +A  T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ 
Sbjct: 69  RRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQV 127

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPC
Sbjct: 128 YKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPC 185

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EI FD+ G      L  + +     IEIWNLVF+QF ++       LP   +DTGM
Sbjct: 186 GPCTEIHFDRVGNRDAASLVNNDD--PTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGM 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGN------NIVN--HRVIVD 277
           G ER+ ++LQ K +NYD D+F  +  A  Q+ G     Y G       + V+  +RV+ D
Sbjct: 244 GFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVAD 303

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ SF IADG  P NEGR YVLRRI+RRA+ +  + L   +     L+      MG  
Sbjct: 304 HIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDV 363

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYD 392
           +PEL   +  I++ ++ E+E F  TL +G        D V    G   +L+G  AF L+D
Sbjct: 364 FPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGT--VLSGQDAFVLWD 421

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+ + +    GL+ +D   F+ A+EE R +AR      G         S+    
Sbjct: 422 TYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDA 473

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            AT       LR       D       P     +   S+VKAI    E V  A   +   
Sbjct: 474 NATA-----QLRNQGLASTD-----DSPKYGYKDN-DSVVKAIYTGSEYVSAASGDEDFG 522

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMS 570
           +V + T FYAE GGQ+ DTG   G      +T+VQ  A G  +H     +G   L     
Sbjct: 523 LVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFA-GYVLHMGSFTKGSKALSVGDK 581

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   
Sbjct: 582 VACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPE 641

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV-------- 681
           +L+ IE  VN  I   L V  R +   DA   +G  A+ G  Y D VRVVSV        
Sbjct: 642 DLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLL 701

Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              E ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI A+T + A
Sbjct: 702 ANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHA 754


>gi|609338|gb|AAC49007.1| cytoplasmic alanyl-tRNA synthetase [Saccharomyces cerevisiae]
 gi|1097386|prf||2113423A Ala-tRNA synthetase
          Length = 958

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 286/774 (36%), Positives = 416/774 (53%), Gaps = 74/774 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + +  LY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDSLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKRTKSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ELK +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV       
Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|196231110|ref|ZP_03129970.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196224940|gb|EDY19450.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 925

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 334/977 (34%), Positives = 489/977 (50%), Gaps = 141/977 (14%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA---- 60
           + IR +FL+FF++  H ++PSSSL+P + P L+FTN+GM  F  IF G+ K    +    
Sbjct: 4   AQIRQSFLDFFREKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGERKADVSSWADA 62

Query: 61  --------------------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100
                                   QKC+RAGGKHNDLD+VG    HHTFFEMLGN+SFG 
Sbjct: 63  VNWFGEKNRDGTLNKTSDTRAADTQKCIRAGGKHNDLDDVGLDTYHHTFFEMLGNWSFGD 122

Query: 101 YFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLW-KKISGLSAD 149
           YFK+ AI+ AW+L+   +    +RLY T+Y          D DEEA+ LW +K   +  D
Sbjct: 123 YFKKEAIEWAWELVVGRWKFPPQRLYATIYNPDKSIGDPADRDEEAWNLWAEKFRAVGLD 182

Query: 150 KIIRITT---NDNFWSMAETGPCGPCSEIFFDQGECIPGG-------LPGSSEEGERYIE 199
             + I      DNFW M ETGPCGPCSE+  D     P G         G++E     IE
Sbjct: 183 PAVHIVNGNKKDNFWMMGETGPCGPCSELHVD---LTPAGDTKGALVNKGTAE----CIE 235

Query: 200 IWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ----------EKTNNYDIDLF 249
           IWNLVF+QF          LP   +DTGMG ER+++++Q           K +NY+ D+F
Sbjct: 236 IWNLVFIQFNANPDGTFSPLPAKHVDTGMGFERVSSIIQGTKDFTDFANAKISNYETDIF 295

Query: 250 KHLIQASEQVTGMKY---------EGNNI---------VNHRVIVDHLRSSSFLIADGIL 291
           + +    E+  G +Y         +G  I         V  RVI DH+R+ SF IADGI 
Sbjct: 296 RPIFDEIEKQCGKRYTSTLPQPNAQGQIIPESEQEKVDVAFRVIADHIRTLSFAIADGIQ 355

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N  R YVLRRI+RRA+ Y R LG+TEP    L+  L   MG  +PE+   +  +EE L
Sbjct: 356 PGNTDRNYVLRRILRRAVRYGRTLGFTEPFFYKLVGVLARTMGDVFPEIRAKQKHVEEVL 415

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E F +TLD+G+ L    ++   K + L+G  AFKLYDT+G PLD+ + +   RGL 
Sbjct: 416 KREEESFNRTLDKGIELFTSFVAS-EKQQQLSGTSAFKLYDTYGFPLDLTELMARERGLT 474

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +DI  F   +E+QR RAR   +       + I  S  E    T FIGYD          
Sbjct: 475 -VDIAGFEVEMEKQRKRAREAQV------RDVIELSEIETKTPTHFIGYD---------- 517

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V+ ++        +V G+ V V+ + +  YAE GGQ+GD+
Sbjct: 518 -------------HNHTGADVQEVL--------SVKGKTV-VIANNSVCYAEMGGQVGDS 555

Query: 532 GCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G   G  G   +I + QK        H + E         + + +D   R  +  +H+ T
Sbjct: 556 GEMTGHGGNSWRIANTQKSGNTWL--HFLEEADGPAVGDHVTIQLDGARRGAIQRHHTVT 613

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ++    +Q GS + PD L FD  +S  +T  +++ IE  VN+ I +N  V 
Sbjct: 614 HLLHWALHEVVSKEATQKGSFVGPDKLTFDF-NSAALTPVQVRDIERLVNERIVENGSVS 672

Query: 651 TRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSSTGEI 705
              M   +    G      G KY + VRVV +  +    DG  +S  LC GTH  +TGEI
Sbjct: 673 WIEMPYAEVRGRGDIMQFFGDKYGETVRVVQIGGQATKLDG--YSMELCAGTHTRATGEI 730

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I +ES+I AG+RRIEA  G  A        ++L +LA+ +      +  R+E +  
Sbjct: 731 GLFRINAESAIAAGVRRIEAAAGLNAYDLANADTQRLHALATKVGSPLPELEKRIEGLLA 790

Query: 766 EYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819
           + ++L+       +R+     +DL  +  A +N    II+ +   D   L++V DAL+  
Sbjct: 791 QQKELEKALKAAQQREAAGRAKDLLANA-ATINGTPAIIANLGAADGDTLQTVADALKSN 849

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
              G+ +L G +     +++  V+ D   +  A  + +  A ++ GG GGG+P  A+ GG
Sbjct: 850 GFKGVTVLGGTAN-GAVALVAAVSPDFTAKVQAGKIIQTIAPLV-GGKGGGKPEGARGGG 907

Query: 880 PNGNKADQAIAGVASFL 896
            + +K ++A+A   + L
Sbjct: 908 KDPSKLEEALAQAKALL 924


>gi|126305114|ref|XP_001362507.1| PREDICTED: similar to Alanyl-tRNA synthetase [Monodelphis
           domestica]
          Length = 968

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 297/790 (37%), Positives = 429/790 (54%), Gaps = 64/790 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRRRFIDFFKRNQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPAHPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF
Sbjct: 67  NRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +        + D E  ++W+ + GL   KI+     DNFW M +TGPCG
Sbjct: 127 GIPVDRLYVTYFGGNEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSEI +D+ G+     L   +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 186 PCSEIHYDRIGDRDAAHL--VNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG + Y G    +++    + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARQYTGCVGADDVDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L         L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNAKRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDHIMLDI---YAIEEL-- 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPP---IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
              ++G +   +  K   Q       +  N V++ VKA+ ++   V+E  +GQ+  VV D
Sbjct: 474 --RIKGLQVTDDSLKYNYQSDSSGTYEFENPVAT-VKALRREKMFVDEVSTGQECGVVLD 530

Query: 517 QTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           +T FYAE GGQ+ D G  +       D     + D Q +  G +V H     G LR    
Sbjct: 531 KTCFYAEQGGQIYDEGYLVKEDDSSEDKTEFTVKDAQVR--GGYVLHIGTVYGSLRVGDR 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ 
Sbjct: 589 VRLYIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------- 681
           +L+  E   N +IA   PV  +      A A  G  A+    Y D VRVVS+        
Sbjct: 648 QLRETETIANGMIAAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVAKLL 707

Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G + S   CGGTH+ ++     L IVSE +I  GIRR+ A+TG  A+  L   
Sbjct: 708 DDPSGPAGSLTSVEFCGGTHLQNSSHAGALVIVSEEAIAKGIRRVVAVTGVEAQKALRKA 767

Query: 739 DEKLKSLASF 748
           D    SL+  
Sbjct: 768 DSLKSSLSEL 777


>gi|320581101|gb|EFW95323.1| Cytoplasmic alanyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 954

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 324/985 (32%), Positives = 503/985 (51%), Gaps = 133/985 (13%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
            + +R TFL++F+  GH  + SSS+IP +DPTL+F N+GM  +K IF G   P      +
Sbjct: 7   ATKVRNTFLDYFKDRGHTFVSSSSVIPHDDPTLLFANAGMNQYKPIFLGTVDPSSSFASL 66

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +AV + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +WDLLT  
Sbjct: 67  KRAVNS-QKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTNV 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY+T ++ D         EA + WK + G++ D I+     DNFW M + GPC
Sbjct: 126 YGLNKDRLYVTYFEGDAANGLEPDLEAKQYWKDV-GVADDHILPGNAKDNFWEMGDQGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +S   ++    +EIWN VF+QF ++       LP   +DT
Sbjct: 185 GPCSEIHYDR----IGGRNAASLVNQDDPDVLEIWNNVFIQFNREQDGSLKPLPAKHVDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277
           GMG ER+ +VLQ   +NYD D+F+ L    +++TG++ Y G       + I   +RV+ D
Sbjct: 241 GMGFERLVSVLQNVRSNYDTDVFQPLFSKIQEITGVRPYSGKFGKDDLDGIDTAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGS 335
           H+R+ +F +ADG +P NEGRGYVLRRI+RR   Y R  + Y        L P L  ++  
Sbjct: 301 HVRTLTFALADGGVPNNEGRGYVLRRILRRGARYVRKYMNYPIGKFFSQLAPTLIEQVKD 360

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393
            +PE+      I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT
Sbjct: 361 IFPEVATNTDTIFEILDEEEASFARTLDRGEKLFEQYAIIASKTPEQTLAGRDVWRLYDT 420

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+ + +    GL  ID        EE   +AR  SL        K          
Sbjct: 421 YGFPVDLTRLMAEEAGL-NID--------EEGFEKARLASLEASKAGGSK---------- 461

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLC---QKPPIDLTN--------GVSSIVKAIVQQGEIV 502
                      G   +K D  +L        I +T+         + + +  I    E++
Sbjct: 462 ----------SGKTLLKLDVHILGALDSNKDIPVTDDSYKYGNQDIKTKIVGIYNGKELL 511

Query: 503 ---EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHA 558
              E   +GQ++ V+ ++TPFYAE GGQ  DTG  + DG+   ++ +VQ  A G  +H  
Sbjct: 512 GSTEGTEAGQQLGVLLEKTPFYAEQGGQEYDTGKIVIDGVAEFEVENVQSYA-GYVLHTG 570

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V  G       ++   D   R  +  NH+ TH+L+ AL  ILG  V Q GS +  + LR
Sbjct: 571 HVVEGKFSVGDQVIAGYDELRRWPIRNNHTGTHILNLALREILGDGVDQKGSLVAAEKLR 630

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRV 676
           FD ++   +T  +L+ IE   N II  ++PV ++   +N   +I  G  A+ G  Y D V
Sbjct: 631 FDFSNKAAVTLEQLEKIEAICNKIIKDSMPVYSKPVALNVAKSI-YGLRAVFGETYPDPV 689

Query: 677 RVVSV--------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           RVVS+              E+ D   +S   CGGTHV+ T +I  L IV ES I  GIRR
Sbjct: 690 RVVSIGVPVEELLAKPDNKEWYD---YSVEFCGGTHVAKTSDIKELVIVEESGIAKGIRR 746

Query: 723 IEAITG------QRARSHLMGQ-------------DEKLK---------SLASFLKVSQG 754
           I A+TG      QR       Q             ++KLK         S++   K    
Sbjct: 747 IVAVTGTEAHEVQRIAKEFDEQLDAIEKMPFGEAKEKKLKETSTKLGQLSISVLQKAQLK 806

Query: 755 NVVGRVEE-IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
           +   ++++ + +E +  Q    K+ L    E  + H+ A    + HI    ++K +   +
Sbjct: 807 DKFAKIDKAVKDEVKARQKADTKKALDAVKEFFAEHEDAPF-LVKHIDISANAKIITETI 865

Query: 814 DALQKK-IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
           + ++K+  +  + ++ G   + + +  + ++++ L +  A ++A ++A  + GG  GG+ 
Sbjct: 866 NMIKKENKEKSLFLITGQKDDARVAQGVYISDEHLGKVQATEVANVAASYI-GGKAGGKG 924

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
           ++ Q  G    + D+AI+ V   L+
Sbjct: 925 NVCQGMGTEAAQIDKAISAVEKLLE 949


>gi|313837754|gb|EFS75468.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927365|gb|EFS91196.1| alanyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314972691|gb|EFT16788.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
 gi|328907450|gb|EGG27216.1| alanine--tRNA ligase [Propionibacterium sp. P08]
          Length = 892

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 303/866 (34%), Positives = 461/866 (53%), Gaps = 70/866 (8%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           F++FF   GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T++QKCVR 
Sbjct: 10  FVDFFAGKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATSIQKCVRT 68

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LDQRRL 125
                D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  D      D   +
Sbjct: 69  ----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKSEAIQYAWELVTKPADQGGLGFDPSSI 124

Query: 126 YITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           ++TV        Y E D EA + W+  +G+    I   +  DN+W M   GP GPCSEI+
Sbjct: 125 WVTVLGPGFHPDYPEGDIEAREAWRA-AGVPDGHIQGRSLKDNYWHMGVPGPGGPCSEIY 183

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKMSIDTGMG 229
            D+G    P G P + E+  RY+EIWNLVF          ++ F     L  ++IDTG G
Sbjct: 184 IDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSLNIDTGAG 241

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ D    +I  + +++G +Y  N  + +  RV+ DH+RS   L+ 
Sbjct: 242 LERIAYLLQGVDNMYETDQVFPVIAKASEMSGKRYGANHDDDIRLRVVADHVRSGLMLMT 301

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+++     +
Sbjct: 302 DGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDVLTEWDRV 361

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+E F +TL  G  +LD  +  + +   + L+G+ AF+L+DT+G P+D+  ++ 
Sbjct: 362 ISAATAEEETFRRTLSAGTAMLDAAVIDTKVSGSKTLSGEKAFQLHDTYGFPIDLTLEMA 421

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +GL  +D   F   + EQR+RA+A S       T+   ++     G T F+GY     
Sbjct: 422 AEQGLE-VDRDKFTALMAEQRARAKADSKTKKGLLTDPEAYAQIRALGETPFLGY----- 475

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                            DLT  V++ V  I+  G  V  A  G  VEVV  +TPFYAE G
Sbjct: 476 ----------------TDLT--VNTTVTGIIANGTSVTAAGPGSVVEVVLAETPFYAEMG 517

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D+G    +G  L++ DVQ+   G+ VH   ++ G L     +   ++   R     
Sbjct: 518 GQDSDSGIIRANGFDLEVLDVQRPVPGLIVHKVHLD-GDLAVGDQVTAVVNPTTRFGACQ 576

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ATH++H AL  I+G   +Q GS   P  LRFD + +K ++ +    IE+  N  I  
Sbjct: 577 AHTATHVIHAALREIVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEERCNVAIHD 636

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTHV+STG I
Sbjct: 637 DFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTHVASTGRI 692

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  RV ++  
Sbjct: 693 GMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERTLVNELTGILKVQPDQLADRVSKLVT 752

Query: 766 EYRKLQ--LIHAK-RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + +  +  L  A+ R+L   V+D+          +F++  +  V   +L+++   ++ ++
Sbjct: 753 DLKDAERKLAAARTRELMSQVDDIVAGATSAGSFDFIAAKVPGVVGNDLRTLASEVRGRV 812

Query: 821 Q--SGIIMLVGISKEKKASVLIVVTE 844
           +    ++ L+G + +K A +++  TE
Sbjct: 813 KDRPAVVTLIGGTDDKPA-MIVAATE 837


>gi|115481322|ref|NP_001064254.1| Os10g0182000 [Oryza sativa Japonica Group]
 gi|110288715|gb|ABG65948.1| Alanyl-tRNA synthetase, mitochondrial precursor, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113638863|dbj|BAF26168.1| Os10g0182000 [Oryza sativa Japonica Group]
 gi|215694746|dbj|BAG89937.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 999

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 294/773 (38%), Positives = 405/773 (52%), Gaps = 72/773 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P      +
Sbjct: 55  ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 114

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +A  T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ 
Sbjct: 115 RRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQV 173

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPC
Sbjct: 174 YKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPC 231

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EI FD+ G      L   + +    IEIWNLVF+QF ++       LP   +DTGM
Sbjct: 232 GPCTEIHFDRVGNRDAASL--VNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGM 289

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGN------NIVN--HRVIVD 277
           G ER+ ++LQ K +NYD D+F  +  A  Q+ G     Y G       + V+  +RV+ D
Sbjct: 290 GFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVAD 349

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ SF IADG  P NEGR YVLRRI+RRA+ +  + L   +     L+      MG  
Sbjct: 350 HIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDV 409

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYD 392
           +PEL   +  I++ ++ E+E F  TL +G        D V    G   +L+G  AF L+D
Sbjct: 410 FPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGT--VLSGQDAFVLWD 467

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+ + +    GL+ +D   F+ A+EE R +AR      G         S+    
Sbjct: 468 TYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDA 519

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            AT       LR       D       P     +   S+VKAI    E V  A   +   
Sbjct: 520 NATA-----QLRNQGLASTD-----DSPKYGYKDN-DSVVKAIYTGSEYVSAASGDEDFG 568

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMS 570
           +V + T FYAE GGQ+ DTG   G      +T+VQ  A G  +H     +G   L     
Sbjct: 569 LVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFA-GYVLHMGSFTKGSKALSVGDK 627

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   
Sbjct: 628 VACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPE 687

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV-------- 681
           +L+ IE  VN  I   L V  R +   DA   +G  A+ G  Y D VRVVSV        
Sbjct: 688 DLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLL 747

Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              E ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI A+T + A
Sbjct: 748 ANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHA 800


>gi|282853869|ref|ZP_06263206.1| alanine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583322|gb|EFB88702.1| alanine--tRNA ligase [Propionibacterium acnes J139]
 gi|314923563|gb|EFS87394.1| alanyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|315092198|gb|EFT64174.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315103610|gb|EFT75586.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327327432|gb|EGE69208.1| alanine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 315/926 (34%), Positives = 480/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD   V +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VEVV  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPT 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLATDLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|320169841|gb|EFW46740.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 992

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 310/889 (34%), Positives = 454/889 (51%), Gaps = 110/889 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPVYQAVTT 63
           IR  F+++F   GHE + SSSL+P NDPTL+F N+GMV FK+ F            +  +
Sbjct: 88  IRRDFVQYFVDRGHEHVKSSSLVPQNDPTLLFVNAGMVQFKDRFLHPRASSSGRLTSAVS 147

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+RAGGKHNDL NVG T RHHTFFEMLGNFSFGGYFKE AI LAWD LT    L + 
Sbjct: 148 VQKCMRAGGKHNDLTNVGYTPRHHTFFEMLGNFSFGGYFKETAIPLAWDYLTAHLQLPKD 207

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGEC 182
           RL ITVY+ D+E++ +W+   G+   +I R+   DN+WSM +  GPCGPC+EI FD    
Sbjct: 208 RLMITVYETDDESYAIWRDKIGVPESRIWRLGAADNYWSMGDGPGPCGPCTEIHFD---- 263

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMGLERMATVLQ 238
           +  GL   + + ERY+EIWN+VFMQ ++      +     L    IDTGMGLER+A VLQ
Sbjct: 264 LQNGL--DARDPERYMEIWNVVFMQEQKVASSSGQLSLAPLETKCIDTGMGLERLARVLQ 321

Query: 239 EKTNNYDIDLFKHLIQASEQVTG--------MKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
            K +N++ID    L  A+             +       +N  ++ DH+R++SFLIADG+
Sbjct: 322 GKASNFEIDSLASLTAATAAAASAASQASGQLATPPTAFLN--IVADHVRAASFLIADGV 379

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA-YPELIQAKLLIEE 349
           +P+N GRGYVLRR++RRA      +G  +P +  L+P L        YPE+   +  I  
Sbjct: 380 IPSNLGRGYVLRRVIRRAAGVGLQMGLKKPFLADLVPVLLASTDPTFYPEIFARQTEICA 439

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L+ E+E F   L  G+ +L+  +      K  +L     F+L+++HG P+D+ + I   
Sbjct: 440 ILKQEEEVFSSALHSGVSMLNSEIDAAVQRKQAVLAPATVFRLHESHGFPIDLARIISTQ 499

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           RG++  D  +  Q + + R   R  S   GS  +                    LL  + 
Sbjct: 500 RGVS-FDEQAIEQMVVDNREMTRQRSRATGSAAS--------------------LLTNAN 538

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
             +E                 + + +AIV    + E   S  K+ VV DQ+P Y E GGQ
Sbjct: 539 SKQE----------------TTQLKEAIV--SSMSESRDSKVKLAVV-DQSPLYPEGGGQ 579

Query: 528 LGDTGCAI------------------GDGIRLQITDVQKKAEGI-FVHHAIVERGILRTE 568
           +G+TG  +                  GD I ++I       +G  F   A   +  LR+ 
Sbjct: 580 VGETGDVLSSDGSTLLGVVETTSKPAGDFITIRIRPADSDVDGTAFDSIAAGGKIQLRSH 639

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            SL        R  +S +H+A H+L+ AL  + G+ V Q GS +T   LRFD TH   ++
Sbjct: 640 ASL--------RHVISAHHTAVHMLNAALRKMFGTTVVQAGSLVTSQRLRFDFTHKAALS 691

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            A+++ +E  VN I    LPV T ++   +A   GA ++L   Y++ VRVV +     G 
Sbjct: 692 DAQVEQLEAAVNGIAQSRLPVQTEVLPLAEAQRRGAISMLNETYSENVRVVKI-----GD 746

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTH S++  +    IV++SS+ AG RRIEA+ G+ A + L GQ + L  +A  
Sbjct: 747 VSMELCGGTHASNSHSVFPFKIVAQSSVAAGTRRIEAVAGETAITWLAGQQQVLGRIART 806

Query: 749 LKVSQGNVV-----GRVEEIWEEYRKLQLIHAKRKLQL--NVEDLS-CHKIADVNFMSHI 800
           LKV  G  V       V+ + ++ + +     KR        ++LS    +AD   +S  
Sbjct: 807 LKVEPGPGVEDALNALVQRLKDQTKAIDAAMVKRASSPWNEAQELSGLLAVADTTAVSVS 866

Query: 801 ISEVDSKELKSVMDALQKKIQSGI---IMLVGISKEKKASVLIVVTEDL 846
              VDS E  S  +   +++ + +   ++ V I  +   +V I     L
Sbjct: 867 FRMVDSSEPSSFANVRAERLANALQPTVVHVVIGSDNSMAVAIPAAPQL 915


>gi|197099554|ref|NP_001125391.1| alanyl-tRNA synthetase, cytoplasmic [Pongo abelii]
 gi|75042108|sp|Q5RC02|SYAC_PONAB RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|55727911|emb|CAH90708.1| hypothetical protein [Pongo abelii]
          Length = 968

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 297/798 (37%), Positives = 431/798 (54%), Gaps = 66/798 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASKIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  PSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               DL       K +  +      +   N V++++ A+ ++   VEE  +GQ+  VV D
Sbjct: 473 LRARDLEVTDDSPKYNYHLDSSGSYV-FENTVATVM-ALRREKMFVEEVSTGQECGVVLD 530

Query: 517 QTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           +T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L+    
Sbjct: 531 KTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKVGDQ 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ 
Sbjct: 589 VWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQ 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYE 684
           ++K  E+  N++I    PV T+  +   A A  G  A+    Y D VRVVS+     E  
Sbjct: 648 QIKKAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELL 707

Query: 685 D------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   
Sbjct: 708 DDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL--- 764

Query: 739 DEKLKSLASFLKVSQGNV 756
             K  SL   L V +  V
Sbjct: 765 -RKAGSLKKPLSVMEAKV 781


>gi|193656980|ref|XP_001950431.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon
           pisum]
          Length = 955

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 324/957 (33%), Positives = 490/957 (51%), Gaps = 81/957 (8%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-- 57
           + +   IR  +++FF  K GHE + SSS++P +DPTL+F N+GM  FK IF G   P   
Sbjct: 2   VPSAKEIRDRYIKFFIDKKGHEYVYSSSVVPVDDPTLLFANAGMNQFKPIFLGTVAPSSD 61

Query: 58  ---YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
              ++     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK    Q AW+ L
Sbjct: 62  MAKWKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTEICQWAWEFL 121

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+EF L   RLY+T +        + D E   +W K+ GL+ D II     DNFW M ET
Sbjct: 122 TQEFKLSPDRLYVTYFGGDKKSGLEPDLECKNIWLKL-GLAEDHIIPGNMKDNFWEMGET 180

Query: 167 GPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           GPCGPCSEI +D+ G  +   L   +++    +EIWNLVFMQ+ +  +     LPK  ID
Sbjct: 181 GPCGPCSEIHYDRIGNRLAADL--VNQDDPDVLEIWNLVFMQYNRNQEGTLHNLPKKHID 238

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVIV 276
            GMG ER+ +V+Q+K +NYD DLF+ L  A +  T    YEG           + +RV+ 
Sbjct: 239 CGMGFERLVSVIQDKRSNYDTDLFQPLFVAIQNGTNAPPYEGKVGADDIDQKDMAYRVLA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGS 335
           DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G 
Sbjct: 299 DHARTLTIALSDGGSPDNTGRGYVLRRILRRAVRYATEKLNGKPGFFATLVNVVVDLLGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PE+ +    I E +  E+E+F +TL RG  LL+  +  L  D+++ G+VA+KLYDT+G
Sbjct: 359 TFPEITKDPQQIIEIINEEEEQFLRTLSRGRNLLNRTILKL-TDKVIPGEVAWKLYDTYG 417

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   ++  +G   ID+    +A EE + +A+  S     G  E I   +       
Sbjct: 418 FPVDLTYLMVEEKGFT-IDM----EAYEEAKKKAQLISQNKVGGDKEVISLDV-HALADL 471

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           Q  G      S   K + K +      + T    +S V +I    + V E  + Q+  ++
Sbjct: 472 QTKGISTTDDSP--KYNYKAVSDDADAEYTFETCTSTVLSIRLINQFVNEVDTFQECGII 529

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ+ D G  + D      + +VQ +  G  +H  I+E G L+    +VL
Sbjct: 530 LDKTCFYAEQGGQIYDQGSMVKDEFTEFYVNNVQLRG-GYILHVGILESGSLKVGDKVVL 588

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID + RR +  NH+ATH L+H L  +LG +++Q GS + PD LRFD  +   +T  ++ 
Sbjct: 589 KIDEKRRRFVMNNHTATHTLNHTLRVVLGDNLNQKGSLVAPDKLRFDFNNKAALTGDQVA 648

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRV----------RVVSVE 682
            +E   N++I +N  V  +I    DA    G  A+    Y D V          ++++  
Sbjct: 649 KVEKLTNEVIKRNDTVYAKIAPLNDAKRIKGLRAMFDETYPDPVRVVSVGVTVDKLLTDP 708

Query: 683 YEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---------- 731
             + G+ +S   CGGTH+  TG +    I+SE +I  GIRRI A+TG  A          
Sbjct: 709 EGNSGLETSVEFCGGTHLHKTGHMECFTILSEEAISKGIRRIVAVTGPEATKAYNRGEEL 768

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-----------------EEYRKLQLIH 774
           +  +M  D K  +L+  +  +Q  +   V   W                 EE RK QL+ 
Sbjct: 769 KKDVMKLDSKDVNLSKAIIDTQDKINKSVIPYWVKEELRSVLSGLKKGIAEEERK-QLVA 827

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
              ++  +++   C +     F+  +    ++K + +V+  L+  + +  IML+    E 
Sbjct: 828 QASEVAKSIKTKICSESDKTVFIYKLDVGSNTKVMDAVLKLLKADMPNISIMLLSEDTEG 887

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K+     VV++DL  +    +           G GGG+   AQ+ G N    +Q I+
Sbjct: 888 KRIYCQCVVSKDLNKKGLMANKWVTKIASCINGKGGGKADTAQASGCNETGVEQLIS 944


>gi|301115782|ref|XP_002905620.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262110409|gb|EEY68461.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 897

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 300/802 (37%), Positives = 434/802 (54%), Gaps = 91/802 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPV----YQ 59
           + +R+ FL+FF+  GH ++PS+SL+P   D +L+F N+GMVPFK  F G +       Y 
Sbjct: 25  TELRSRFLQFFESQGHRVVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGAKARGYS 84

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFKE+AI + W  LT+E +
Sbjct: 85  RATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKEQAITMCWRFLTQELE 144

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RL++TV   D+EA +LWK+I+GL   KI  +  +DNFW+M ++GPCGPCSE+F+D 
Sbjct: 145 LPIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCSEVFWDL 204

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G+ I       ++  ER++E+WNLVFMQF   +   E   LP  S+DTGMGLER+A+VLQ
Sbjct: 205 GDHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLERVASVLQ 257

Query: 239 EKTNNYDIDLFKHLIQASEQV--------------TGMKYE----------GNNIVNHRV 274
              +NY  D+F  L+     V              + ++ E          G  I   R+
Sbjct: 258 GVPSNYHTDVFVPLLTEVATVLDANRSSTLRQSFTSALQEELDPRKNLFGTGKEIQTLRI 317

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           + DHLR++  L+ DG+ P+N GRGYVLRRI+RRA+ +A+ LG        +L ++     
Sbjct: 318 VSDHLRATYALLQDGVFPSNIGRGYVLRRIIRRAIRHAQQLGVRSG-SDGILASIAVPGW 376

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
           S    L Q + ++     +E+  F + L  G   ++   S      +L+G  AF+LYDT 
Sbjct: 377 SEAAGLQQMRAIVA----NEERAFEEMLRNGRGAIEKAFSK--TQVMLSGADAFRLYDTF 430

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G+PLDI Q +   +GL+ +D   ++   +  + +    S+     ++E+   S       
Sbjct: 431 GIPLDITQVLAEEKGLS-VDTEGYDACRKSHKQQTSDRSVFHTQASSEQS-SSTPAATVV 488

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           ++F+GY+ L  SK      +VL      D  +G  S                      V+
Sbjct: 489 SEFVGYEQLSVSK-----ARVL------DCWSGSGSA------------------GFSVI 519

Query: 515 FDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA----EGIFVHHAIVERGILRTEM 569
            D+ PFY E GGQ+GD G  I  D I ++ T  +         +F++ A VE        
Sbjct: 520 LDRCPFYPEGGGQVGDRGHLINEDAIAIKCTLPKDTTFEDISALFLNEATVE-------- 571

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
                +D + R   +++H+ATHLL  AL   LG HV+Q GS +T D LRFD  H   +++
Sbjct: 572 ---AHVDRRFRSGCAVHHTATHLLQRALKAELGEHVTQAGSQVTSDRLRFDFAHFGALSA 628

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E+ S+E  VN   A  L V T  + REDA  SGA    G KY D VRVV V  E     
Sbjct: 629 DEMASVEARVNAFAAAELDVSTVELPREDAERSGAICNFGDKYGDVVRVVRVGGEAETPV 688

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           SS  CGGTHV++  EI    +VSE S+ AG RR+EA+ G     +L  + + L  +A  L
Sbjct: 689 SSEFCGGTHVNNVREIFPFAMVSEGSVAAGTRRVEAVAGHAGARYLQAKAQTLSDVADQL 748

Query: 750 KVSQGNVVGRVEEIWEEYRKLQ 771
             +   VV RV ++ ++ ++L+
Sbjct: 749 STTPAKVVERVAKMHKQMKQLE 770


>gi|262341353|ref|YP_003284208.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272690|gb|ACY40598.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 887

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 302/861 (35%), Positives = 469/861 (54%), Gaps = 75/861 (8%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           SIR TFL FF+K  H+++PS  +   NDP+L F N+GM PFK+ F G  +P Y  +  VQ
Sbjct: 5   SIRDTFLGFFKKKEHKVIPSFPIHSKNDPSLFFINAGMNPFKDYFLGHIQPDYSRIVNVQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R  GKHNDL++VG  N HHT FEMLGN+SFG Y ++  I+ AW+LL + +++ ++ +
Sbjct: 65  KCLRVTGKHNDLEHVGYDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLIQVYNIPKKNI 124

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           YI+V+          D E FK WK +  +S + I+     +NFW M  TGPCGPCSEI  
Sbjct: 125 YISVFIGDKKEGLSMDYETFKYWKTL--ISEENILFFGKKENFWEMGLTGPCGPCSEIHI 182

Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D + E     L G    +++  + IEIWNLVF++F +++  +   L K  +DTGMGLER+
Sbjct: 183 DLRNEKEKQMLSGKHLVNKKHPKVIEIWNLVFIEFLRKSDGKLEKLTKKHVDTGMGLERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
             +LQEK ++Y+ D+F  +IQ  ++  G  Y+ +    V+  +I DHLR+  F I+DG+ 
Sbjct: 243 CMILQEKFSSYETDIFFPIIQNIKESLGKIYKEDFHQKVSIHIIADHLRAIVFSISDGVF 302

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P+N G GYV+RRI+RRA+ YA R L   EP +   + +L  EM S +PEL++ K  I+  
Sbjct: 303 PSNNGAGYVIRRILRRAIIYATRFLYKKEPFIYQFVDSLVKEMKSYFPELMEKKEYIKNV 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+  F K +++G   +  ++    K  ++I++G   FKLYDT+G P+  +  +L  +
Sbjct: 363 IQEEELSFLKVIEKGNHKIQYIIEKAKKQNEKIIDGTTIFKLYDTYGYPIK-LSKMLVEK 421

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK---YGATQFIGYDLLRG 465
               ID   F++ L EQ++R++  +  +     +K W  +      +    F+GYD+++ 
Sbjct: 422 NNLLIDEKLFHEKLLEQKNRSKKENHTI----EKKDWIEVHNHQFIHENVNFVGYDMIKC 477

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              + + RKV          N +                       E+VF +TPFY E G
Sbjct: 478 DVLILKYRKV---------ENKLE-----------------KTHYYELVFSKTPFYPEGG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR-QLS 584
           GQLGDTG    +   + I +  KK   I +H A   + +     S    I  +NRR ++ 
Sbjct: 512 GQLGDTGFIKNETDEVYIFNT-KKENSIIIHSA---KKLPSDVFSSFKAIVDKNRRLEIE 567

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH++THLLH +L  ILG+H+ Q GS +  D LRFD +H + IT  EL  IE+ V ++I 
Sbjct: 568 KNHTSTHLLHFSLKKILGNHIQQKGSYVGEDYLRFDFSHYQKITVEELYKIENLVQELIF 627

Query: 645 QNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +L +     + +   E  I+   +     KY   VRV++         SS LC GTHV 
Sbjct: 628 SDLILEEKRFSSLQEAEKNISFYKSETFENKYKQEVRVITFG------KSSELCIGTHVK 681

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG I +  I+SESSI  GIRRI+AIT ++A  +L    ++ +S    +K  +      +
Sbjct: 682 HTGLIQIFKIISESSISYGIRRIKAITSKKAVQYLKSIHDQYQSFKKMMKYPESPFKSFL 741

Query: 761 ---EEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHI--ISEVDSKELKSVMD 814
              +E  E  +K+  I  ++ + L  E  L   + + +N++  I    E D   +K ++ 
Sbjct: 742 ILQKENQELKKKISEIRLQQMITLKKEYSLKAIQFSSINYICDIDLSKEKDINLIKKIVL 801

Query: 815 ALQKKIQSGIIMLVGISKEKK 835
            L+ +I S + M+VG  KE K
Sbjct: 802 DLRNEI-SNLFMIVGFIKENK 821


>gi|302681375|ref|XP_003030369.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8]
 gi|300104060|gb|EFI95466.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8]
          Length = 949

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 290/774 (37%), Positives = 419/774 (54%), Gaps = 77/774 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  F ++FQ  GH  + SS  +P +DPTL+F N+GM  FK +F G   P       +  
Sbjct: 12  VRQDFFDYFQSKGHTFVRSSPTVPYDDPTLLFANAGMNQFKPLFLGTVDPHSDLSKLKRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ + L 
Sbjct: 72  YNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEVYKLP 131

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY++ ++ D         EA + W  I G+  D I+     DNFW M  TGPCGPCS
Sbjct: 132 KDRLYVSYFEGDPKNGLEPDLEAKQYWLDI-GVPEDHILPGNAKDNFWEMGATGPCGPCS 190

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+QF +++      LP   +DTGMG 
Sbjct: 191 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQFNREDDGSLKPLPSKHVDTGMGF 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +V+Q+K +NYD D+F  + Q  +++TG++ Y+G       + I   +RV+ DH+R+
Sbjct: 247 ERLVSVVQDKRSNYDTDVFSPIFQRVQELTGVRPYQGLFGPDDKDGIDTAYRVVADHVRT 306

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYPE 339
            +F ++DG +P N GRGYVLRRI+RR   YAR  LG T       L+P +   MG  +PE
Sbjct: 307 LTFALSDGGVPNNVGRGYVLRRILRRGARYARKKLGVTIGSFFSSLMPVVVEHMGDVFPE 366

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397
           + +    I+E L  E+E F +TLDRG  L D       +  +  LNG   ++LYDT+G P
Sbjct: 367 ITKKLPEIKEILDEEEESFARTLDRGEKLFDQYAKRAKEQNLKELNGKDVWRLYDTYGFP 426

Query: 398 LDIMQDILCARGLAGIDIISFN--QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           +D+   +    GL GI+   F   QA  ++ S+A  +                K+     
Sbjct: 427 VDLTTLMAEELGL-GINEKEFEDAQAWSKEASKATQN----------------KDAATVV 469

Query: 456 QFIGYD---LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQK 510
           +   +D   L +G    K D      +   ++T  V  I   KA +     + EA S   
Sbjct: 470 KLDVHDIAALEKGGDVAKTDDSSKYNQG--NITATVKKIFHNKAFLDSTSDIPEATS--- 524

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE+GGQ  DTG  + DG+   ++TDVQ    G  +H   ++ G L    
Sbjct: 525 FGIILDRTNFYAESGGQENDTGGIVIDGVAEFEVTDVQ-VYNGYVLHVGHLKYGDLEVGN 583

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +V + D   R  L  NH+ATH+L++ L  +LG H+ Q GS + P  LRFD +H   I  
Sbjct: 584 EVVASYDELRRWPLRNNHTATHILNYCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQIPL 643

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY----- 683
            EL  IE    D I +N+ V  + M+ + A    G  A+ G  Y D VRVVS+E+     
Sbjct: 644 PELTQIESMSVDWIKKNVKVYGKDMDLKSAQKIPGLRAVFGETYPDPVRVVSLEFSVDEI 703

Query: 684 ----EDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               E+    S+++  CGGTHV+ TG+I    I  ES I  GIRRI A+TG  A
Sbjct: 704 SADIENPKWRSTSIEFCGGTHVAKTGDIKHFVITEESGIAKGIRRIVAVTGHEA 757


>gi|296129664|ref|YP_003636914.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021479|gb|ADG74715.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 897

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 294/792 (37%), Positives = 441/792 (55%), Gaps = 60/792 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L++F    H ++PS  LI   DP+++FT +GMVPF     G +   +  V  
Sbjct: 3   TAEIRQRWLDYFASKDHAIVPSVPLI-SPDPSILFTIAGMVPFIPYILGTQDAPWPRVAN 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
            QKC+R     ND++NVGRT RH TFF+MLGNFSFG YFKE AI+LAW  LT        
Sbjct: 62  AQKCIRT----NDIENVGRTTRHGTFFQMLGNFSFGDYFKEGAIELAWGFLTGAQESGGL 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T+++ED+EA     ++ G+    ++R+T  + FW   + GP GPC+E  +D
Sbjct: 118 GLDGDRLWVTIWNEDDEAADALVRV-GVDPRHVVRLTREEIFWDTGQPGPAGPCAEWHYD 176

Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231
           +G E  P  + G+ + G +RY+EIWNLVF QF   E + K    +  L + +IDTG GLE
Sbjct: 177 RGPEFGPDAVGGTVDPGGDRYLEIWNLVFDQFVRGEGRGKDYPLLGELERKAIDTGAGLE 236

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ K N Y+ D    +I+ + +++G +Y   G + V  RV+ DH+RS+  LI DG
Sbjct: 237 RIAYLLQGKNNLYETDEVFPVIERAAELSGRRYGASGEDDVRLRVVGDHVRSALMLIGDG 296

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR++RRA+   RLLG  +  +  LLP     MG +YPE+++    I +
Sbjct: 297 VTPSNEGRGYVLRRLVRRAVRSMRLLGVEDAALPELLPISRDLMGVSYPEVVRDFDRISQ 356

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
               E++ F +TL  G  + +G +S       G   +L G+ AF L+DT+G P+D+  ++
Sbjct: 357 VAYGEEDAFLRTLTAGTTIFEGAVSKAKAGADGTGVVLTGEQAFALHDTYGFPIDLTLEM 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-----TTEKIWFSLKEKYGAT-QFI 458
               G+  +D  +F   ++ QR RARA +L   +G     T +++  +L  + GA+ +F+
Sbjct: 417 AAEHGV-DVDEQAFRTLMQAQRDRARADALAKKTGHADTSTYQQLQQALSAENGASVRFV 475

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                      D T   ++ V  ++  G     A +   V+VV D T
Sbjct: 476 GY---------------------TDTT--AATKVVGLLVDGVPAPAATAPADVQVVLDVT 512

Query: 519 PFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           PFYAEAGGQL DTG  ++ DG  +++ DVQ   +G+ VHH  +  G L    +   TID 
Sbjct: 513 PFYAEAGGQLADTGTISLADGAIVEVDDVQAPIKGLSVHHGRLVDGTLTLGDTGTATIDT 572

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR ++  H+ATH++H AL   LG   +Q GS   P  LRFD    + + ++ L  IE 
Sbjct: 573 ARRRAIARAHTATHMVHKALREELGDTATQAGSENAPSRLRFDFRSGQSVPASSLSQIEG 632

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ +  +L V  R M  ++A A GA AL G KY + VRVVS+    GG  S  LC GT
Sbjct: 633 RVNERLQDDLEVTDRTMAIDEARALGAMALFGEKYGNEVRVVSI----GGDWSRELCAGT 688

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  +GE+ L+ ++ ESSI +G+RR++A+ G  A  +   +   +  L+  L      + 
Sbjct: 689 HVRRSGELGLVTLLGESSIGSGVRRVDALVGDSAYGYQAKERALVSQLSGLLGARPDELG 748

Query: 758 GRVEEIWEEYRK 769
            RV  +    R+
Sbjct: 749 ERVSSLLTRVRE 760


>gi|291519140|emb|CBK74361.1| alanyl-tRNA synthetase [Butyrivibrio fibrisolvens 16/4]
          Length = 795

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 307/815 (37%), Positives = 447/815 (54%), Gaps = 64/815 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFK  AI  +W+ LT+   LD  RLY ++Y EDEEAF++W K  G++ ++I
Sbjct: 1   MLGNFSFGDYFKHEAIAWSWEFLTEVLKLDPNRLYPSIYGEDEEAFEIWTKEVGVAPERI 60

Query: 152 IRITTN------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNL 203
            R   +      DNFW     GPCGPCSEI++D+GE    G P      + +R++E+WN 
Sbjct: 61  TRFYRDPETGECDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNN 119

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           VF QF          L + +IDTGMGLER+A V+Q+  + +DID  K +     +++G K
Sbjct: 120 VFTQFNGDGHGGYEELAQKNIDTGMGLERLAVVMQDVDSVFDIDTMKAIRDKICEMSGKK 179

Query: 264 YEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           Y+ + +  V+ R+I DH+RSS+FL++DG+ P+NEGRGYVLRR++RRA  + R LG     
Sbjct: 180 YQVDALDDVSIRLITDHIRSSTFLVSDGVTPSNEGRGYVLRRLIRRAAKHGRALGIQGSF 239

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GK 378
           M  L   +  E    YPEL + +  I +TL +E+E+F KT+D+GL +L G+   L   G 
Sbjct: 240 MAKLSETVINECKDGYPELWEKREFIFKTLTAEEEQFNKTIDKGLEILAGMEEKLVAAGS 299

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-----HS 433
            E L+G+  FKLYDT+G P+D+  +IL  +G    D   F   +EEQR +ARA     + 
Sbjct: 300 KE-LSGEDTFKLYDTYGFPVDLTAEILEEKGFT-YDAAGFEACMEEQRQKARAARKETNY 357

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
           +G  +   + I  S+      ++F+GYD                            S V 
Sbjct: 358 MGADASVYDDIDLSV-----TSEFVGYD-----------------------NTTSESTVT 389

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            +  + EIV+    G    ++  +TPFYA  GGQ+GDTG          + D  K   G 
Sbjct: 390 VLTTETEIVDTLAEGMIGTIIVPETPFYATMGGQIGDTGVISTANGEFTVKDTIKLKGGK 449

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             H   +  G+++    + LT+D + R ++  NHSATHL+  AL  +LG+HV Q GS   
Sbjct: 450 IGHVGEMTSGMIKVGEKVTLTVDAERRARICKNHSATHLMQKALREVLGTHVEQKGSYQD 509

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D  RFD +H   +TS E+  +E  VND IA+ L V T IM+ ++A  SGA AL G KY 
Sbjct: 510 ADRTRFDFSHFSAMTSEEIAKVEKMVNDKIAEGLAVTTAIMSIDEAKKSGAMALFGEKYG 569

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + VRVV +     G  S  LCGGTHVS+T EI    I+SES + AG RRIEAITGQ    
Sbjct: 570 ETVRVVKM-----GDFSVELCGGTHVSNTSEISAFKILSESGVAAGTRRIEAITGQAVFE 624

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRKLQLNVEDL--S 787
           +    + KL + A+ LK     V  ++    +++ E   +L+ + AK   Q  V D+  S
Sbjct: 625 YYADLEAKLNAAAAALKCKPSEVEEKIAHLQKQLKETNSELESLKAK-AAQAAVGDVMDS 683

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             ++  V  ++  ++ VD   L+ + D L+ K+  G+I+L      K   V++       
Sbjct: 684 VVEVKGVKLLATSVTGVDMNGLRDLGDDLKTKLGEGVIVLASDCDGKVNLVVMATDAAQA 743

Query: 848 DRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPN 881
              +A +L + ++ KV   GGGGGRP+MAQ+GG N
Sbjct: 744 AGAHAGNLIKAIAPKVG--GGGGGRPNMAQAGGKN 776


>gi|149699352|ref|XP_001501062.1| PREDICTED: similar to LOC510933 protein [Equus caballus]
          Length = 968

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 299/808 (37%), Positives = 431/808 (53%), Gaps = 88/808 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF
Sbjct: 67  SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCG
Sbjct: 127 GIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDTG
Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYAGKVGADDADGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG+ + + GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGESKTIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEK 451
           +D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I         L+EK
Sbjct: 422 VDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDIYAIEELREK 476

Query: 452 -----YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  + ++  Y    GS   +                   + V A+ +    VEE  
Sbjct: 477 GLEATDDSPKYNYYSDSSGSYVFE----------------SAVATVMALRRDKMFVEEVS 520

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIV 560
           +GQ+  VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H   
Sbjct: 521 TGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGT 578

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD
Sbjct: 579 IYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFD 637

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
            T    +++ ++K  E+  N++I    PV T+  +   A A  G  A+    Y D VRVV
Sbjct: 638 FTAKGAMSTQQIKKAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVV 697

Query: 680 SV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+     E  D      G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG
Sbjct: 698 SIGVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTG 757

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV 756
             A+  L     K +SL   L V +G V
Sbjct: 758 AEAQKAL----RKAESLKKSLSVMEGKV 781


>gi|75858922|ref|XP_868801.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4]
 gi|40747680|gb|EAA66836.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4]
          Length = 981

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 291/791 (36%), Positives = 426/791 (53%), Gaps = 92/791 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R TFL++FQ  GH  + SS + P +DPTL+FTN+GM  FK+IF G   P      +  A
Sbjct: 16  VRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSA 75

Query: 61  VTTVQ-KCVRAGGKHN------------------DLDNVGRTNRHHTFFEMLGNFSFGGY 101
           V + + +C+RAGGKHN                  DLD+VG+ + HHTFFEMLGN+SFG Y
Sbjct: 76  VNSQKMQCIRAGGKHNVGWHPVQAGQVFANICEQDLDDVGKDSYHHTFFEMLGNWSFGDY 135

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIR 153
           FK+ AIQ +W+LLT+ + LD  RLY+T ++         D EA  LWK + G+  D I+ 
Sbjct: 136 FKKEAIQYSWELLTQVYGLDPGRLYVTYFEGNKEGGLQPDLEAKALWKAV-GVPEDHILP 194

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQ 210
               DNFW M + GPCGPCSEI +D+     GG   +S   ++    +EIWN VF+Q+ +
Sbjct: 195 GNMKDNFWEMGDQGPCGPCSEIHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNR 250

Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNI 269
           +N      LP   +DTGMG ER+ +VLQ+K++NYD D+F  + Q  + +TG + Y+G   
Sbjct: 251 ENDGSLRSLPNKHVDTGMGFERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFG 310

Query: 270 VN--------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE-- 319
            +        +RV+ DH+R+  F I+DG++P NEGRGYV+RR++RR   YAR     E  
Sbjct: 311 TDDSDGIDTAYRVVADHVRTLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIG 370

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLG 377
                ++P +  ++G  +PEL Q +  + E L  E+  F KTLDRG    +     +   
Sbjct: 371 SFFSKIVPTVVEQLGDMFPELKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTA 430

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
            D  L+G   ++LYDT G P+D+ + +   RGL  ID    ++  EE R +A+  S G  
Sbjct: 431 GDHKLHGADVWRLYDTFGFPVDLTRIMAEERGLE-ID----DRQFEEARHKAKEASKGQK 485

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
             TT           G+ +   +DL +  K     +     K  I     V++ +KAI  
Sbjct: 486 KTTT-----------GSVKLDVHDLGKLEKMNGVPKTDDSAKFEI---GNVTAQIKAIY- 530

Query: 498 QGEIVEEAV----SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEG 552
            G+    +       +++ ++ D+T FYAE GGQ  DTG  + DG   L++ DVQ+ A G
Sbjct: 531 HGKTFHSSTQNLDDSEQIGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYA-G 589

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             +H   ++ G  + + +++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS +
Sbjct: 590 YVLHTGYMKYGSFKVDDTVICEYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLV 649

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671
           + + LRFD +H  P+T  EL  IED     I +N  V ++ +    A   +G  A+ G  
Sbjct: 650 SAEKLRFDFSHKSPVTDVELVKIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGET 709

Query: 672 YNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D VRVVSV  E   +            S   CGGTHV  TG+I  L I+ ES I  GI
Sbjct: 710 YPDPVRVVSVGAELDEILKNVEDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGI 769

Query: 721 RRIEAITGQRA 731
           RRI A+TG+ A
Sbjct: 770 RRIIAVTGEDA 780


>gi|313665096|ref|YP_004046967.1| alanine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949489|gb|ADR24085.1| alanine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 896

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 299/932 (32%), Positives = 487/932 (52%), Gaps = 106/932 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P    +T 
Sbjct: 6   TNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AIQLAW+LLT +  FD+D
Sbjct: 66  SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIQLAWELLTDKNYFDID 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+GE
Sbjct: 122 KNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180

Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L   + E +RYIE+WN+VF QF          LP+ +IDTG GLER A++
Sbjct: 181 VWDPNKIGSRLISDNIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFASI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283
            Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH+R++ 
Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP LI  
Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDR 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           K L+E+T++ E+E+F KTL +G  LL+ ++       I++G  A  L++++G P++   +
Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNIVSGKDALLLFESYGFPIEQTIE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462
           I     +  +D+  FN  LE+ +   R     L +   +   F+ LK +   ++F G+  
Sbjct: 418 ISELSNVQ-VDVEGFNNLLEQAKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S+  +++ KV+                     Q ++  E+++ Q+  V+ D+TPFYA
Sbjct: 472 ---SELSRDNVKVIY----------------MFTDQKQV--ESITDQEAFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V+ G L+    +   ++ + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNIHRIKVQ-GTLKVNDLINCRVEEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG++V Q+GS    +GLR D T+ +  TS EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTNVMQSGSYNDENGLRMDFTYHRLPTSEELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY+  VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749
           T EI    I    S  +G+ RI+ +T  RA +  + +             +K       L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKAYKDQAESIIDKYNQNKDLL 744

Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
           K  Q                      +++ +++E+ ++Y K    LI A + L+      
Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDQLKEVNKDYDKKVNDLITANKLLKYKDLTP 804

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S +K  ++N +    +++  K+LK + D L+ K    I++L+  +KE    +++ V + L
Sbjct: 805 SLNK-DNINEIRLETTDLTIKDLKQLADDLRNKYNDLIVILLSSTKENNF-IVVAVGQSL 862

Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876
            +++ A+D+       L G    GGG  ++AQ
Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890


>gi|42560730|ref|NP_975181.1| alanyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|48428509|sp|P61704|SYA_MYCMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42492226|emb|CAE76823.1| alanine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321137|gb|ADK69780.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 896

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 299/932 (32%), Positives = 488/932 (52%), Gaps = 106/932 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P    +T 
Sbjct: 6   TNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT  K FD+D
Sbjct: 66  SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKKYFDID 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+GE
Sbjct: 122 KNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180

Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLER A++
Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFASI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283
            Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH+R++ 
Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP LI  
Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDK 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           K L+E+T++ E+E+F KTL +G  LL+ ++    K+ + + D A  L++++G P++   +
Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462
           I     +  +D+  F + LE+ +   R     L +   +   F+ LK +   ++F G+  
Sbjct: 418 ISELSNVT-VDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S+  +++ KV+                     Q ++  E+++ Q+V V+ D+TPFYA
Sbjct: 472 ---SETSRDNAKVIY----------------MFTDQKQV--ESITNQEVFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V+ G L+    +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNIHRIKVQ-GTLKVNDLINCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY+  VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749
           T EI    I    S  +G+ RI+ +T  RA +  + +             +K       L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKVYKDQAESIIDKYNQNKDLL 744

Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
           K  Q                      N++ + +E+ ++Y K    LI A + L+      
Sbjct: 745 KNDQLENIYLQIKNTTINKDNLLVIKNLLDQSKEVNKDYDKKVNDLITANKLLKYKDLTP 804

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S +K  ++N +    ++++ K+LK + D L+ K    I++L+  + E    +++ V++ L
Sbjct: 805 SLNK-DNINEIRLETTDLNIKDLKQLADDLRNKYNDLIVILLSSTNE-NTFIVVAVSQSL 862

Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876
            +++ A+D+       L G    GGG  ++AQ
Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890


>gi|307210107|gb|EFN86804.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 972

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 288/772 (37%), Positives = 421/772 (54%), Gaps = 58/772 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P      +  V
Sbjct: 10  IRQAYIDFFKNKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAKWVRV 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT+   L 
Sbjct: 70  VNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICSWAWEFLTETLKLP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  +LW  + G+ A  ++     DNFW M ETGPCGPCS
Sbjct: 130 ADRLYVTYFGGDEKNGLAPDNECKELWLSL-GIPASHVLPGNMKDNFWEMGETGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           E+ +D+     GG   +   + +    +EIWNLVF+Q+ ++       LPK  ID G+GL
Sbjct: 189 ELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNREADGNLKPLPKKHIDCGLGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYE---GNNIVN-----HRVIVDHLRS 281
           ER+ +V+Q K  NYD DLF  L  A E+ TG   Y+   G + VN     +RV+ DH R+
Sbjct: 245 ERLVSVIQNKRANYDTDLFMPLFAAIEKGTGAPPYQGKIGTDDVNRVDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPEL 340
            +  +ADG +P N GRGYVLRRI+RRA+ YA      +P     L  +  E +G  +PE+
Sbjct: 305 ITIALADGGIPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGEVFPEV 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +    I + +  E+ +F KTL RG  LL+  ++ L  ++ + GDVA++LYDT+G P+D+
Sbjct: 365 TKDPQSIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESNDTVPGDVAWRLYDTYGFPIDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   +GL  ID+  +    EE + +A+  S     G  ++I   +   +  T+    
Sbjct: 425 TQLMTEEKGLK-IDMAGY----EESKKQAQLISQNKVGGVDDQINLDV---HSITELQER 476

Query: 461 DLLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
            +       K + K+         +    + ++++ + +    V++  SG++V ++ D+T
Sbjct: 477 GIKPTDDSPKYNYKITSTTTYKEYEFAPCIGTVIE-LRRAKTFVDQVSSGEEVGILLDRT 535

Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            FYAE GGQ+ D G  +    +   ++I +VQ +A G  +H   V  GIL+    +   +
Sbjct: 536 NFYAEQGGQIYDEGFLVKVDDEATEIRIKNVQVRA-GYVLHIGTVGEGILKKGDQVHANV 594

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NHSATH L+HAL  +LG+   Q GS + PD LRFD T+  P+T+ ++K+ 
Sbjct: 595 DTTRRRLVMANHSATHALNHALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTEQVKNA 654

Query: 636 EDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV-----EYEDGGVH 689
           E+  ND+I  N  +  +  N   A    G  A+    Y D VRVVS+     E E   + 
Sbjct: 655 ENITNDMIKDNKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVVSMGVPIEELEKNPLS 714

Query: 690 SSA------LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
             A       CGGTH+  TG I    I SE +I  GIRRI A+TG  A   L
Sbjct: 715 PVATQTSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKAL 766


>gi|332020821|gb|EGI61219.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 1010

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 337/960 (35%), Positives = 496/960 (51%), Gaps = 98/960 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
           N   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P      
Sbjct: 43  NAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAK 102

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK      AW+ LT  
Sbjct: 103 WVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKNEICAWAWEFLTDV 162

Query: 118 FDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L   RLY+T +  DE      D+E   LW  + G+ A  ++     DNFW M ETGPC
Sbjct: 163 LKLPADRLYVTYFGGDEKSGLAPDDECKNLWLSL-GVPASHVLPGNMKDNFWEMGETGPC 221

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSE+ +D+     GG   +   + +    +EIWNLVF+Q+ ++       LPK  ID 
Sbjct: 222 GPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNRELNGSLKSLPKKHIDC 277

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVD 277
           G+GLER+ +V+Q K  NYD D+F  L  A E+ TG   Y+G       N I + +RV+ D
Sbjct: 278 GLGLERLVSVIQNKRANYDTDVFMPLFAAIEEGTGAPPYQGKVGADDVNGIDMAYRVLAD 337

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L   +     L+  +   +G  
Sbjct: 338 HARTLTIALADGGVPDNTGRGYVLRRILRRAVRYATEKLNAKQGFFGSLVNVVVDLLGDV 397

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PE+ +    I E +  E+ +F KTL RG  LL+  ++ L   + + GDVA++LYDT+G 
Sbjct: 398 FPEVRKDPQSIIEIINEEESQFLKTLSRGRNLLNRTIAKLESADTVPGDVAWRLYDTYGF 457

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   +GL  IDI  +    EE + +A+  S     G  ++I F +   +  T+
Sbjct: 458 PIDLTQLMTEEKGLK-IDIAGY----EESKKQAQLISQNKAGGVDDQINFDV---HAITE 509

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG-VSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                +       K D KV  +    +      +  V A+ +    V+E  SG++V ++ 
Sbjct: 510 LQKQGVKPTDDSPKYDYKVTTEIKYKEYEFAPCTGTVIALRRAKTFVDEVSSGEEVGILL 569

Query: 516 DQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           D+T FYAE GGQ+ D G  +    +   ++I +VQ +A G  +H   V  G LR    + 
Sbjct: 570 DRTNFYAEQGGQIYDEGFLVKVDDETTEIRIKNVQIRA-GYVLHIGTVGEGTLRKGDKVH 628

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D + RR +  NHSATH+L++AL  +LG+   Q GS + PD LRFD T+  P+T  +L
Sbjct: 629 TNVDTERRRFVMANHSATHVLNYALRKVLGTKADQKGSLVAPDRLRFDFTNKGPMTGGQL 688

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----EYE 684
           +  E   N++I +N  +  +  N   AIA    G  A+    Y D VRVVSV       E
Sbjct: 689 QDTEQLANNVITENEKIYAKESNL--AIAKTIQGLRAMFEETYPDPVRVVSVGIPVENLE 746

Query: 685 DGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----RSH 734
              + ++AL      CGGTH+  T  I    IVSE +I  GIRRI A+TG  A    R+ 
Sbjct: 747 KDPLSTAALETSVEFCGGTHLHYTSHIGNFTIVSEDAIAKGIRRIVALTGPEAAKALRTG 806

Query: 735 LMGQDEKLKSLASF----LKVSQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLN 782
           ++ Q +  +  AS      + +    V  + E+ EE        Y K  + +  + L+ +
Sbjct: 807 MLLQRQLSQFQASIEDDKSETNSKEYVREIVELTEEISHALIPAYWKDHMRNTLKNLKKS 866

Query: 783 VEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGISKEK 834
           ++D      A V         S I S+V  + L  V++A    K +   +  +  IS E 
Sbjct: 867 LDDKERAAKATVATTVVQTAQSIIESKVGCQVLVEVLEAYSNTKALDQALKKIRAISPET 926

Query: 835 KASVLIVVTEDLLDRF--NAVDLARLSAKV-----------LGGGGGGGRPHMAQSGGPN 881
            A +LI +  D+   F  ++V  + +S  +           L  G GGG+   AQ+ G N
Sbjct: 927 SA-LLISIDHDVKKIFALSSVPKSAVSKGLKANEWIQAITSLMQGKGGGKSESAQASGSN 985


>gi|87307364|ref|ZP_01089509.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87290104|gb|EAQ81993.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 937

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 280/781 (35%), Positives = 413/781 (52%), Gaps = 62/781 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L F++  GH    S  L+P  DP+++FT +GM  FK+ F G+ K  +   TT QK
Sbjct: 6   LREKYLSFYETKGHSRRASDVLVPTWDPSVLFTPAGMNQFKDHFLGRVKLDFTRATTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+DNVGRT  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   L   +
Sbjct: 66  CLRTG----DIDNVGRTAYHHTFFEMLGNFSFGDYFKPEAISWAWEFLTDKKWLGLPADQ 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQ 179
           L +TVY +D+EA   W +  GL   +I R+  ++NFW     S+   G CGPCSEI+F  
Sbjct: 122 LTVTVYKDDDEAADYWHEKIGLPTSRIHRLEEDENFWPASAPSLGPDGVCGPCSEIYF-- 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237
                        +G   +EIWNLVF QF +       +  LP  +IDTGMGLER A  L
Sbjct: 180 -----------HPKGSSPVEIWNLVFTQFNRVGDPPNNLEPLPSKNIDTGMGLERTAATL 228

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY ID+ + +++A+ ++ G+KY  E +N    R I DH+R+ +F I + + P   
Sbjct: 229 QGVATNYHIDILRPIVEAAGEICGVKYVPEDDNGRRLRRITDHVRACTFAIHENVYPGAN 288

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
              YV+RR++RRA+     +G  EP    L+  +   M + YPEL +    +   +R+E+
Sbjct: 289 KEKYVIRRLLRRAVLDGHQMGLREPFAYQLVDKVAEMMKAGYPELQETTQRVANVIRTEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E F   LD GL   + V + + KD   I++G+ A +LY T+G P ++ + +   +GLA  
Sbjct: 349 ENFLDRLDDGLARTEKVFNTMRKDNLTIVDGNDAAELYQTYGFPPELFEQVAAEKGLA-F 407

Query: 414 DIISFNQALEE-QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   +  A+E+         S+   +G  E    SLK     T ++GYD        + +
Sbjct: 408 DWPGYKAAMEKFGEETGGGTSVLFTTGPIE----SLKNTLRKTDYVGYD--------QSE 455

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             V  +       +G S +     Q GE          + VV D TPFY E+GGQ+GD+G
Sbjct: 456 ADVTIKGIVAHDADGASKLFDDYDQTGE-------AHPLIVVTDCTPFYGESGGQVGDSG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN--HSAT 590
             +G   R  +TD QK ++ +F+HH  +  G + +       +     R+L I   HSAT
Sbjct: 509 EIVGAAFRFVVTDTQKDSD-LFLHHGYLASGKISSNTDAKAIV---GERRLGIQRAHSAT 564

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH+AL   LG+H  Q GS +  D LRFD T+   +T  +L +IE++VN+ +  +  V 
Sbjct: 565 HILHYALQKNLGAHAQQQGSKVDEDWLRFDFTNLAAVTPEQLAAIEEDVNERVEASEKVK 624

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              +    A   GA  L G KY D VR+VS+     G  S  LCGGTH++STG++ +  +
Sbjct: 625 WETVPLAKARELGAMMLFGEKYPDPVRLVSM-----GTFSRELCGGTHLTSTGDVGMFEV 679

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE    AG+RRI A+TG +A+ +       L  +A  L V   +V   V+E+ +  R L
Sbjct: 680 ISEEGPSAGVRRIVALTGTKAKEYRQQVAASLGDIAKSLGVHTLDVPVAVKELMQYVRDL 739

Query: 771 Q 771
           +
Sbjct: 740 K 740


>gi|331232484|ref|XP_003328904.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307894|gb|EFP84485.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 969

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 282/776 (36%), Positives = 407/776 (52%), Gaps = 74/776 (9%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
           +R TF E+FQ ++ H  + SSS++P +DPTL+F N+GM  +K IF G   P +     + 
Sbjct: 18  VRKTFFEYFQNQHAHTFVHSSSVVPFDDPTLLFANAGMNQYKPIFLGTIDPSHPFKNLKR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI +AWDLLT+ + L
Sbjct: 78  AVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKSEAIHMAWDLLTRVYAL 137

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  D         E+ ++W  + G+  DK++     DNFW M  +GPCGPC
Sbjct: 138 PKDRLYVTYFQGDPAQNLLPDLESKQIWIDL-GVHPDKVLPGNAKDNFWEMGTSGPCGPC 196

Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG   +   +++    +EIWN VF+Q+ ++       LP   +DTGMG
Sbjct: 197 SEIHYDR----VGGRNAAELVNQDDPMVLEIWNNVFIQYNREPSGSLKPLPARHVDTGMG 252

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLR 280
            ER+ +VLQ+KT+NYD D+FK L    +++TG +     +           +RVI DH+R
Sbjct: 253 FERLVSVLQDKTSNYDTDVFKPLFDRIQELTGARPYAGKLGEDDVDGIDTAYRVIADHVR 312

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSAY 337
           + +F I+DG +P N GRGYVLRRI+RR   Y R   +  P+      L P L  +MG  +
Sbjct: 313 TLTFAISDGGVPNNVGRGYVLRRILRRGARYVR-KKFDVPIGNFFSRLAPTLIDQMGDVF 371

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395
           PE+      ++E L  E+  F  TLDRG  + +       K+    L+G   ++LYDT+G
Sbjct: 372 PEIRSKTEELKEILDEEEASFALTLDRGEKMFEKYAEKAKKEGKKNLDGQDVWRLYDTYG 431

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   ++      GID   F          A+A S  L  G  +K+           
Sbjct: 432 FPVDLTL-LMAEEARLGIDHDGFEM--------AQAASKELSKGGKKKV---------VG 473

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVE 512
             +  D+   ++    D+           ++ +++ VKAI   G+     E   S  +  
Sbjct: 474 TAVELDVHAIAELESNDKVPKTDDSSKFASSSITATVKAIYYDGKFHSSTEAVPSSSRCG 533

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D+T FYAE GGQ  DTG            + DVQ    G  +H  +V  G+L+   S
Sbjct: 534 IILDKTNFYAEQGGQENDTGSLTNPEKQTTFDVEDVQ-VYNGYVLHSGLVSEGVLQVGDS 592

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D   R  +  NH+ TH+L+ AL   LG H+ Q GS + P  LRFD +H + +T  
Sbjct: 593 VSAAYDELRRWPIRNNHTGTHVLNWALRETLGDHIDQKGSLVAPSKLRFDFSHKQQVTID 652

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYE 684
           EL  IE   N  I+++ PV  R M  ++A    G  A+ G  Y D VRVV V     +  
Sbjct: 653 ELSKIESTCNQWISKSFPVAAREMRLDEAKKIPGLRAVFGEAYPDPVRVVVVGPNPFDLL 712

Query: 685 DGGV-------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           D  +       +S   CGGTHV  T EI  L +V ES I  G+RRI A+TG+ ARS
Sbjct: 713 DADLTDPKWSNYSVEFCGGTHVKLTSEIKQLVLVEESGIAKGVRRIVAVTGEEARS 768


>gi|94734006|emb|CAK04587.1| alanyl-tRNA synthetase [Danio rerio]
          Length = 966

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 320/981 (32%), Positives = 490/981 (49%), Gaps = 112/981 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A
Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG+   + GD A+ LYDT+G 
Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +        
Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512
               D LR       D     +    D  N         V A+ ++   V+E ++GQ+  
Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           V+ D+T FYAE GGQ  D G  + +      R++ T    +  G +V H     G L+  
Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 586

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             L L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    ++
Sbjct: 587 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681
           + E++  E+    +IA    V        DA  + A A+ G +      Y D VRVVS+ 
Sbjct: 646 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 700

Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                         G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A
Sbjct: 701 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEA 760

Query: 732 RSHLMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKR 777
           +      D          EK+K+ +   K  Q  +    E     +  ++RK ++  + +
Sbjct: 761 QKAQRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLK 820

Query: 778 KLQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQK 818
            L+  ++DL     ADV                     +  + S   +K L   +  L+ 
Sbjct: 821 GLKKIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKT 880

Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
                  ML  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ
Sbjct: 881 NSPQTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQ 939

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           + G N     +A+   + F +
Sbjct: 940 ATGRNTQCIQEALQLASEFAR 960


>gi|314966609|gb|EFT10708.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
          Length = 892

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 314/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD   V +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VEVV  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPT 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G K    VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKSPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLATDLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata]
 gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata]
          Length = 955

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 280/774 (36%), Positives = 412/774 (53%), Gaps = 84/774 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P      + +A
Sbjct: 16  VRDTYVDFFKGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLTRA 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 76  CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W +   L + +++     DNFW M +TGPCGPC
Sbjct: 135 PTDRIYATYFGGDEKAGLQPDNEARDIWLQF--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D+ G      L  + +     +EIWNLVF+QF +++      LP   +DTGMG E
Sbjct: 193 TEIHYDRVGNRDAAYLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+ +VLQ K +NYD D+F  +    ++ TG +     +         + +RV+ DH+R+ 
Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARAYSGKVGPEDDDRVDMAYRVVADHIRTL 310

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+ ++   MG  + EL 
Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKQILKAEEGFFNGLVSSVIRVMGDVFTELK 370

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           + +  I E ++ E+  F KTL +G+         + +   L+G+ AF L+DT+G PLD+ 
Sbjct: 371 EHEKKITEIIKEEEASFCKTLVKGIEKFQKAEQAV-QGNTLSGEDAFVLWDTYGFPLDLT 429

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   R L  +D+  FN+A+EE R R+R                S + K          
Sbjct: 430 QLMAEERRLL-VDVEGFNKAMEEARERSR----------------SAQNKQAG------- 465

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512
              G+  M  D      K  +  T+            S +KAI      +E   +   V 
Sbjct: 466 ---GAIVMDADATSTLHKTGVSATDDSFKYIWFQDHESELKAIYTGSTFLESLAATDNVG 522

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--GILRTEMS 570
           +V   T FYAE GGQ+ DTG   G      + +VQ    G  VH   + +  G +     
Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQIFG-GFVVHIGYLSKDAGEVSVGDK 581

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++  +DY+ R+ ++ NH+ TH+L+ AL  +LG H+ Q GS + P+ LRFD +H KP+   
Sbjct: 582 VICKVDYERRKLIAPNHTCTHMLNFALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPE 641

Query: 631 ELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------- 681
           +L+ IE  VN  I   L V ++  +++    I  G  A+ G  Y D VRVVS+       
Sbjct: 642 DLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRQVEDL 700

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 701 LADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754


>gi|289425435|ref|ZP_06427212.1| alanine--tRNA ligase [Propionibacterium acnes SK187]
 gi|289154413|gb|EFD03101.1| alanine--tRNA ligase [Propionibacterium acnes SK187]
          Length = 913

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 313/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 24  TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 82

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 83  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 138

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 139 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 197

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 198 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 255

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 256 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 315

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 316 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 375

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD   V +     + L+G+ AF+L+DT+G P+
Sbjct: 376 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 435

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 436 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 494

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 495 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 531

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 532 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 590

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 591 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 650

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 651 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 706

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 707 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 766

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 767 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 825

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 826 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 884

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 885 KDDMAQGAGSDPTGIDAALRAVNTEL 910


>gi|156838512|ref|XP_001642960.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113543|gb|EDO15102.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 957

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 313/943 (33%), Positives = 486/943 (51%), Gaps = 100/943 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
           N + +R TF ++F+   H  + SS ++P +DPTL+F N+GM  FK+IF G   P      
Sbjct: 12  NANKVRDTFYDYFKSKNHTFISSSPVVPYDDPTLLFANAGMNQFKSIFLGTVDPTSKLYD 71

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHT+FEMLGN+SFG YFK  AI  +WDLLT  
Sbjct: 72  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTYFEMLGNWSFGDYFKNDAIVYSWDLLTNV 131

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY++ ++ DE        EA  +W+ + G+  D I+     DNFW M E GPC
Sbjct: 132 YKIPKDRLYVSYFEGDESQGLEPDFEARDIWRSV-GVPEDHIVPGNLKDNFWEMGEEGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GP SEI +D+     GG   S   +++    +EIWNLVF+Q+ + ++++   LP   +DT
Sbjct: 191 GPSSEIHYDR----IGGRNASQLVNKDDPNVLEIWNLVFIQYNRDSERKLKALPAKHVDT 246

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--------KYEGNNI-VNHRVIVD 277
           GMG ER+ +VLQ   +NYDIDLF  + +  + +T          KY+ + +   +RV+ D
Sbjct: 247 GMGFERLVSVLQNVNSNYDIDLFTKIFKRIQAITNAREYTGKFGKYDVDGVDTAYRVLAD 306

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGS 335
           H R+ +F + DG +P NEGRGYV+RRI+RR   YAR  + Y+       L+P +  E  S
Sbjct: 307 HARTLTFALTDGCIPNNEGRGYVIRRILRRGARYARKYMNYSIGDFFSKLIPQVIEENKS 366

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDT 393
            +PE+ +    I+E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT
Sbjct: 367 IFPEVSKDFNYIKEILDEEEASFAKTLDRGEKLFEKYASDASKLDSKTLDGLQVWRLYDT 426

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+ + +    GL  ID+  F +A ++    ++  S                +KY 
Sbjct: 427 YGFPVDLTELMAQELGL-NIDVPGFERAKKDSYEASKRAS----------------KKYD 469

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVE 512
              F   D+   SK   +       K   + T+ ++++++ I    E ++ A    +K  
Sbjct: 470 IDLF-KLDVHDISKLNTDAVPKTNDKDKYETTDVMATVLR-IHDGSEFLDVAADKDKKYG 527

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FYAE GGQ+ D G  I DG     + +VQ +  G  +H   +  G L T   +
Sbjct: 528 VILDKTCFYAEQGGQIYDNGKLIIDGKTEFNVENVQ-EFNGYILHIGTLMDGKLSTNDKV 586

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           V + D   R  +  NH+ TH+L+ AL  +LG  V Q GS +TP+  RFD +H KP+T  E
Sbjct: 587 VASFDELRRFPIRNNHTGTHILNFALRDVLGKDVEQKGSLVTPEKFRFDFSHKKPLTLDE 646

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------YE 684
           +K IE   + +I    PV  + +   +A   S   A+ G  Y D VRVVS+        E
Sbjct: 647 IKEIEMICDTLIVSKKPVFYKNVQLNEAKRISSIRAVFGESYPDPVRVVSIGQPVEKILE 706

Query: 685 DGGVHSSA-----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARS 733
           D    +S+      CGGTHV++T +I  L I+ E+ I  GIRRI A+TG      QR   
Sbjct: 707 DPTETNSSEFSIEFCGGTHVANTEDIQKLAIIEETGIAKGIRRITAVTGPEAFNAQRIAE 766

Query: 734 HLMGQ-------------DEKLKSLASFLKVSQGNVV---------GRVEEIW-EEYRKL 770
              G+             D+K+K L   L  S  +V+          ++E+ + EE RK 
Sbjct: 767 QFNGELDDLNSLPFSDAKDKKIKELGFSLNQSTVSVLSKHLLREKFNKIEKKYKEELRKK 826

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829
             + AK  L    E  + +K +   F+       +SK +   ++ ++       I +L G
Sbjct: 827 NKLEAKVILDKVQEYFNTNKSSKF-FVYAFDIPANSKAITDAINYIKNSNNDKSIYLLSG 885

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
             K  K +    +++D + +  +  +L ++   ++GG  GG +
Sbjct: 886 DIKGNKLAHGCYLSDDAISKGIDGEELVKVVTTLIGGKAGGRK 928


>gi|313812791|gb|EFS50505.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
          Length = 892

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 312/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEACEAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|315080484|gb|EFT52460.1| alanyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
          Length = 892

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 317/927 (34%), Positives = 482/927 (51%), Gaps = 74/927 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGKKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG-GGGGG 869
              ++ +++    ++ L+G + +K A  +IV T +      A   A + A V   GG GG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPA--MIVATTESARAAGAKAGALIKAGVAPIGGRGG 862

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+  MAQ  G +    D A+  V + L
Sbjct: 863 GKDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|113195586|ref|NP_001037775.1| alanyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio]
 gi|94734005|emb|CAK04586.1| alanyl-tRNA synthetase [Danio rerio]
          Length = 991

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 320/981 (32%), Positives = 490/981 (49%), Gaps = 112/981 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 31  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 91  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDT
Sbjct: 210 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 265

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 266 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 325

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A
Sbjct: 326 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDA 385

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG+   + GD A+ LYDT+G 
Sbjct: 386 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGF 445

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +        
Sbjct: 446 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 492

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512
               D LR       D     +    D  N         V A+ ++   V+E ++GQ+  
Sbjct: 493 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 551

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           V+ D+T FYAE GGQ  D G  + +      R++ T    +  G +V H     G L+  
Sbjct: 552 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 611

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             L L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    ++
Sbjct: 612 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 670

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681
           + E++  E+    +IA    V        DA  + A A+ G +      Y D VRVVS+ 
Sbjct: 671 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 725

Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                         G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A
Sbjct: 726 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEA 785

Query: 732 RSHLMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKR 777
           +      D          EK+K+ +   K  Q  +    E     +  ++RK ++  + +
Sbjct: 786 QKAQRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLK 845

Query: 778 KLQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQK 818
            L+  ++DL     ADV                     +  + S   +K L   +  L+ 
Sbjct: 846 GLKKIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKT 905

Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
                  ML  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ
Sbjct: 906 NSPQTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQ 964

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           + G N     +A+   + F +
Sbjct: 965 ATGRNTQCIQEALQLASEFAR 985


>gi|50842658|ref|YP_055885.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289428540|ref|ZP_06430224.1| alanine--tRNA ligase [Propionibacterium acnes J165]
 gi|59798519|sp|Q6A8I8|SYA_PROAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50840260|gb|AAT82927.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289158234|gb|EFD06453.1| alanine--tRNA ligase [Propionibacterium acnes J165]
 gi|313807674|gb|EFS46161.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313818711|gb|EFS56425.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820481|gb|EFS58195.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822713|gb|EFS60427.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825353|gb|EFS63067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|314925090|gb|EFS88921.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314960373|gb|EFT04475.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314978647|gb|EFT22741.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314987967|gb|EFT32058.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314989777|gb|EFT33868.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315084155|gb|EFT56131.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315085498|gb|EFT57474.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088445|gb|EFT60421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315105744|gb|EFT77720.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|327331786|gb|EGE73523.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|328753318|gb|EGF66934.1| alanyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
          Length = 892

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 312/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|295130736|ref|YP_003581399.1| alanine--tRNA ligase [Propionibacterium acnes SK137]
 gi|291377126|gb|ADE00981.1| alanine--tRNA ligase [Propionibacterium acnes SK137]
 gi|313771981|gb|EFS37947.1| alanyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313810181|gb|EFS47902.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313830512|gb|EFS68226.1| alanyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313833548|gb|EFS71262.1| alanyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314973512|gb|EFT17608.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976192|gb|EFT20287.1| alanyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314983786|gb|EFT27878.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|315096059|gb|EFT68035.1| alanyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|327326339|gb|EGE68129.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327445767|gb|EGE92421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448250|gb|EGE94904.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|328760699|gb|EGF74265.1| alanine--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 317/927 (34%), Positives = 482/927 (51%), Gaps = 74/927 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG-GGGGG 869
              ++ +++    ++ L+G + +K A  +IV T +      A   A + A V   GG GG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPA--MIVATTESARAAGAKAGALIKAGVAPIGGRGG 862

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+  MAQ  G +    D A+  V + L
Sbjct: 863 GKDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|118763839|gb|AAI28795.1| Aars protein [Danio rerio]
          Length = 966

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 320/981 (32%), Positives = 489/981 (49%), Gaps = 112/981 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A
Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G 
Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +        
Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512
               D LR       D     +    D  N         V A+ ++   V+E ++GQ+  
Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           V+ D+T FYAE GGQ  D G  + +      R++ T    +  G +V H     G L+  
Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 586

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             L L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    ++
Sbjct: 587 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681
           + E++  E+    +IA    V        DA  + A A+ G +      Y D VRVVS+ 
Sbjct: 646 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 700

Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                         G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A
Sbjct: 701 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEA 760

Query: 732 RSHLMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKR 777
           +      D          EK+K+ +   K  Q  +    E     +  ++RK ++  + +
Sbjct: 761 QKAQRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLK 820

Query: 778 KLQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQK 818
            L+  ++DL     ADV                     +  + S   +K L   +  L+ 
Sbjct: 821 GLKKIMDDLDRASKADVQKRVLEKTKEIIESNPNQPLIVMEMESGASAKALNESLKMLKT 880

Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
                  ML  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ
Sbjct: 881 NSPQTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQ 939

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           + G N     +A+   + F +
Sbjct: 940 ATGRNTQCIQEALQLASEFAR 960


>gi|73957022|ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) isoform 1 [Canis familiaris]
          Length = 968

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 297/795 (37%), Positives = 430/795 (54%), Gaps = 62/795 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF
Sbjct: 67  SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCG
Sbjct: 127 GIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTG
Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG + Y G    +        +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   I   +G+  +D+  F    EE+R  A+  S G G+G  + I   +     A + 
Sbjct: 422 VDLTGLIAEEKGMV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDIY----AIEE 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +    L  ++   +              N V+++V A+ +    VEE  +GQ+  VV D+
Sbjct: 473 LREKGLEATEDSPKYNYHSDSSGSYTFENVVATVV-ALRRDKMFVEEVSTGQECGVVLDK 531

Query: 518 TPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           T FYAE GGQ+ D G  +        +++ T    +  G +V H     G LR    + L
Sbjct: 532 TCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------YED- 685
             E+  N +I    PV T+      A A  G  A+    Y D VRVVS+        ED 
Sbjct: 651 KAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDP 710

Query: 686 ----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L     K
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKAL----RK 766

Query: 742 LKSLASFLKVSQGNV 756
            +SL + L V +  V
Sbjct: 767 AESLKNSLSVMEAKV 781


>gi|108799313|ref|YP_639510.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868429|ref|YP_938381.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|123178848|sp|Q1B9I0|SYA_MYCSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830156|sp|A1UFI3|SYA_MYCSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108769732|gb|ABG08454.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694518|gb|ABL91591.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS]
          Length = 897

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 317/906 (34%), Positives = 478/906 (52%), Gaps = 67/906 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P YQ  T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT   D      D
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQGGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ TVY +D+EA +LW++++GL  ++I R    DN+WSM   GPCGP SEI+ D+G 
Sbjct: 121 PEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIYVDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E+     K +  IL   P+ +IDTGMG+ER+A
Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGIERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI DG+ 
Sbjct: 239 CLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIGDGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LLG  + ++  L+  +   MG +YPEL+     I+   
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRIQRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            +E+  F +TL  G  L +         G D  L+G  AF L+DT+G P+++  ++    
Sbjct: 359 VAEETAFNRTLSSGSRLFEEAAQSTKAAGADR-LSGRDAFTLHDTYGFPIELTLEMAAEA 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            LA +D   F   + EQR RA+A +       T+   +        TQF G+D L     
Sbjct: 418 DLA-VDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL----- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
              + ++L          G+    + +   G   + A +  ++E+V D++PFYAE+GGQ+
Sbjct: 472 -TTEARIL----------GIFVDGRRVPVVGH--DTATAQHRIELVLDRSPFYAESGGQI 518

Query: 529 GDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
            D G   G G     +  ++DVQK A+ ++VH   VE G      ++   +D + R   +
Sbjct: 519 ADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVDPRWRHGAT 578

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   IE+  N+ + 
Sbjct: 579 QGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIEEVTNEAVE 638

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V +     E A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +
Sbjct: 639 ADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGGTHVRSSAQ 694

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + 
Sbjct: 695 IGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVAGLV 754

Query: 765 EEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQK 818
           E  +  +    + +L               ++  V  ++  +   + + +L++++  ++ 
Sbjct: 755 ERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLRTLVGDIRG 814

Query: 819 KIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           K+     ++  I++    +V  VV      +DL  R N + + +  A V   G GGG+  
Sbjct: 815 KLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANEL-VKQFGAAV--NGRGGGKAD 871

Query: 874 MAQSGG 879
           +AQ  G
Sbjct: 872 LAQGSG 877


>gi|196003434|ref|XP_002111584.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens]
 gi|190585483|gb|EDV25551.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens]
          Length = 959

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 317/987 (32%), Positives = 501/987 (50%), Gaps = 138/987 (13%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           IR  F++FF +K  H  +PSSS +P +DPTL+F N+GM  FK I+ G   P      Y+ 
Sbjct: 10  IRQMFIDFFVEKYNHLFVPSSSTVPHDDPTLLFANAGMNQFKPIYLGTVDPKSEMATYRR 69

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FK+ +I  AW+LL   + +
Sbjct: 70  VVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKKESIDWAWELLVDVYKM 129

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y+T +  DE        E   +W    G++ ++++     DNFW M +TGPCGPC
Sbjct: 130 PAERMYVTYFGGDEKSGLQPDYETKNIWLA-KGIAPERVLPFGLQDNFWEMGDTGPCGPC 188

Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +EI +D+     GG   +   + +    +E+WNLVF QF ++  +    LP+  +DTG G
Sbjct: 189 TEIHYDR----IGGRDAAYLVNMDDPEVLEVWNLVFTQFNREADKSLRPLPRKYVDTGAG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLR 280
           LER+ +V+Q   +NYD DLFK L      +TG + Y G       + I + +RV+ DH R
Sbjct: 245 LERVTSVIQGVMSNYDTDLFKPLFDKIRSLTGAREYRGLLGDADVDGIDMAYRVLADHAR 304

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPE 339
           + +  I+DG  P + GRGYVLRRI+RRA+ YA      +P M   L  +  E +G A+PE
Sbjct: 305 TLTIAISDGGKPDSTGRGYVLRRILRRAVRYATEKLDAKPGMFAQLVNVAVEKLGGAFPE 364

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           + +   ++ + +  E+ +F KTL RG  + +  VL    KD +L G VA++LYDT+G P+
Sbjct: 365 VTKDPQMVIDIINEEEAQFLKTLSRGRRMFEREVLK--AKDGVLPGFVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT---------EKIWFSL- 448
           D+   +   +GL+ ID+  + +A ++ +  +R    G+              E +   L 
Sbjct: 423 DLTHIMAEEKGLS-IDMDGYEKAKQDSQELSRGKDTGVDDTVALGIHAIKDLEDLAIPLT 481

Query: 449 ----KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
               K  Y +    GY +                       +G+++ + A+  +   V E
Sbjct: 482 DTSPKYNYESDGNGGYTI-----------------------HGIAAKISALRYEKSFVNE 518

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVE 561
            ++G +  ++ D++ FYAE GGQ+ D G  +    +    ++TDVQ    G +V H  + 
Sbjct: 519 VLTGSRCGIILDKSCFYAEQGGQIYDLGFIVNSDDEDTEFKVTDVQ--IMGGYVLHVGIT 576

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G  +   ++ L +D + RR +  NH+ATH+L+ AL   LG    Q GS + PD LRFD 
Sbjct: 577 EGTFKVGDTVQLQVDSERRRTVMNNHTATHILNFALREQLG-EADQRGSLVAPDRLRFDF 635

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDR 675
           T    +T+ ++K+ E+ V +II Q   V  +     DA  + A+A+ G +      Y D 
Sbjct: 636 TAKGAMTTQQIKATEEIVGNIIEQKQQVFAK-----DATLAKASAIQGLRQVFAETYPDP 690

Query: 676 VRVVSVE------YED----GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           VR+VSV        ED     G+ +S   CGGTH+ ++G++    I SE  I  GIRRI 
Sbjct: 691 VRIVSVGVSVDDLLEDPTGPSGLKTSVEFCGGTHLKNSGDMEAFVISSEEPIAKGIRRII 750

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-----------EYRKLQLI 773
           A+TG  A+  +    E L  L    +  Q ++  +  +I E           ++RK +L 
Sbjct: 751 ALTGSDAKKKVTKLQESLSELMKLGRADQTSLKAKKRQITELNDSIAAVTLQQWRKDELR 810

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGII--- 825
              +K++  + D+   K AD      ++ +       SK+L +V++ L+  + S ++   
Sbjct: 811 ETLKKVKKTIIDI--EKAADSKRSQEVVEKAKEIASQSKDLSAVVEVLEAGLSSKVLDSA 868

Query: 826 -------------MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
                        ML  +  E ++ + L  V E ++ +  +A D  +    VL  G GGG
Sbjct: 869 LKQFHSIAPNTAAMLFSVDSEGRRVTCLCQVPEAIMKKGLSASDWVKSVMNVL-EGKGGG 927

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           +P  AQ  G N    + A+     F K
Sbjct: 928 KPTSAQGSGTNVAGLNNALNLAKEFAK 954


>gi|126434971|ref|YP_001070662.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|205830155|sp|A3PZ44|SYA_MYCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126234771|gb|ABN98171.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 897

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 317/906 (34%), Positives = 478/906 (52%), Gaps = 67/906 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P YQ  T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121
           C+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT   D      D
Sbjct: 65  CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQSGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ TVY +D+EA +LW++++GL  ++I R    DN+WSM   GPCGP SEI+ D+G 
Sbjct: 121 PEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIYVDRGP 180

Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234
               G+ G  E  E RYIEIWNLVFMQ E+     K +  IL   P+ +IDTGMG+ER+A
Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGIERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291
            +LQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI DG+ 
Sbjct: 239 CLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIGDGVS 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P N+GRGYVLRR++RR +  A+LLG  + ++  L+  +   MG +YPEL+     I+   
Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRIQRIA 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            +E+  F +TL  G  L +         G D  L+G  AF L+DT+G P+++  ++    
Sbjct: 359 VAEETAFNRTLSSGSRLFEEAAQSTKAAGADR-LSGRDAFTLHDTYGFPIELTLEMAAEA 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            LA +D   F   + EQR RA+A +       T+   +        TQF G+D L     
Sbjct: 418 DLA-VDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL----- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
              + ++L          G+    + +   G   + A +  ++E+V D++PFYAE+GGQ+
Sbjct: 472 -TTEARIL----------GIFVDGRRVPVVGH--DTATAQHRIELVLDRSPFYAESGGQI 518

Query: 529 GDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
            D G   G G     +  ++DVQK A+ ++VH   VE G      ++   +D + R   +
Sbjct: 519 ADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVDPRWRHGAT 578

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   IE+  N+ + 
Sbjct: 579 QGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIEEVTNEAVE 638

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V +     E A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +
Sbjct: 639 ADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGGTHVRSSAQ 694

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + 
Sbjct: 695 IGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVAGLV 754

Query: 765 EEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQK 818
           E  +  +    + +L               ++  V  ++  +   + + +L++++  ++ 
Sbjct: 755 ERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLRTLVGDIRG 814

Query: 819 KIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           K+     ++  I++    +V  VV      +DL  R N + + +  A V   G GGG+  
Sbjct: 815 KLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANEL-VKQFGAAV--NGRGGGKAD 871

Query: 874 MAQSGG 879
           +AQ  G
Sbjct: 872 LAQGSG 877


>gi|164427876|ref|XP_965697.2| alanyl-tRNA synthetase [Neurospora crassa OR74A]
 gi|38567140|emb|CAE76435.1| probable alanine--tRNA ligase, cytosolic [Neurospora crassa]
 gi|157071919|gb|EAA36461.2| alanyl-tRNA synthetase [Neurospora crassa OR74A]
          Length = 961

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 336/966 (34%), Positives = 502/966 (51%), Gaps = 101/966 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQAV 61
           +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM  FK IF G     ++    +  
Sbjct: 12  VRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + LD
Sbjct: 72  VDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGLD 131

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY+T ++         D EA  LW ++ G+  D II     DNFW M + GPCGPCS
Sbjct: 132 PQRLYVTYFEGSPDLGLEPDLEAKNLWLEV-GVPEDHIIPGNMKDNFWEMGDQGPCGPCS 190

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+   + GG   +   + +    +E+WN+VF+QF++Q  +    LP   IDTGMG 
Sbjct: 191 EIHYDK---VGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGF 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ER+ + LQ+KT+NY  D+F  L    ++VTG      KY  +++      +RVI DH+R 
Sbjct: 248 ERLVSALQDKTSNYATDIFTPLFTKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRL 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            SF IADG  P N GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PE
Sbjct: 308 LSFAIADGAAPNNVGRGYVVRRVLRRGVRYARKYFNAEIGTFFSKILPALVEQMGEQFPE 367

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLP 397
           L++ +  I+E L  E+  F  TLDRG    +    L+    ++ L+G   ++LYDT G P
Sbjct: 368 LVKKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGEKKLSGADVWRLYDTFGFP 427

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ + +   RGL  ID    N+A    R +AR  S  +     E  +  L     A   
Sbjct: 428 EDLTKLMAEERGLT-IDEAEVNEA----REKAREASKAVKEAVQE--FAKLNVHQIAELE 480

Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
              ++ R    +KF+K D K   Q     + NG   +  +        ++  +   + ++
Sbjct: 481 TALNIPRPNSDAKFLKGDTKGKVQL----IFNGKEFLKSS--------KDLPAKTPLGLL 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D T FYAE+GGQ+ DTG  I DG+   ++ DVQ+   G  VH+  +E G L     +V 
Sbjct: 529 LDNTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEYG-GYIVHNGFLEYGELTEGDEVVC 587

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  D LRFD +H   I+  ++K
Sbjct: 588 EYDELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDKLRFDFSHKAAISLEDIK 647

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
            IED  N  I QNL   ++ ++ + A    G  A+ G  Y + VRVVS+  E        
Sbjct: 648 KIEDLSNHYIRQNLKAYSKDVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNP 707

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQ 738
              +    S   CGGTHV +TG I  L IV ES I  GIRRI A TG+   +A+      
Sbjct: 708 KNPEWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQREAQVF 767

Query: 739 DEKLKSL---------ASFLKVSQGNVVGRV------EEIWEEYRKLQ--LIHAKRKLQ- 780
           +EKL  +         A+ +K +   + G        EE+   + K+Q  ++  ++K Q 
Sbjct: 768 NEKLNHINALAYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQK 827

Query: 781 ----LNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                 ++ ++ H   D N     F+ H+    ++K +  V+   + K +   + +   S
Sbjct: 828 AESKTALDTVASHFQKDENKESKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGS 887

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K+ +    + V   L  +   A       + V+GG  GG  P   Q  G    K ++A+ 
Sbjct: 888 KDDQVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGKEPSR-QGAGAEPEKLEEAVK 946

Query: 891 GVASFL 896
               +L
Sbjct: 947 KAEEWL 952


>gi|182415646|ref|YP_001820712.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|205830166|sp|B1ZZ40|SYA_OPITP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|177842860|gb|ACB77112.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 937

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 321/933 (34%), Positives = 460/933 (49%), Gaps = 150/933 (16%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA---- 60
           + IR +FL+FF + GH ++PSSSL+P + P L+FTN+GM  F  IF G   P        
Sbjct: 4   AEIRQSFLDFFARQGHTIVPSSSLLP-DSPGLLFTNAGMNQFVPIFLGDRAPDVSKWAGA 62

Query: 61  -------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
                      QKC+RAGGKHNDL++VG    HHT FEMLGN+SFG YFK+ +I   W+L
Sbjct: 63  RPAKDTRAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWGWEL 122

Query: 114 LTKEFDLDQRRLYITVY----------DEDEEAFKLWK---KISGL-SADKIIRITTNDN 159
           +TK + +  +RL+ TVY          D D+EA+ +W    K  GL  A  I+     DN
Sbjct: 123 ITKVWGIPAKRLFATVYSPDKSKNDPSDFDQEAYDIWAGVFKKEGLDPAVHIVHGNKKDN 182

Query: 160 FWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGE--------RYIEIWNLVFMQFEQ 210
           FW M +TGPCGPCSEI F+        LP   E EG         R IEIWN VF+QF  
Sbjct: 183 FWMMGDTGPCGPCSEIHFNL-------LPSDDEVEGRKLVNAGVPRCIEIWNHVFIQFNA 235

Query: 211 QNKQERFILPKMSIDTGMGLERMATV---------LQEKTNNYDIDLFKHLIQASEQVTG 261
                   L    +DTGMG ER+A +              +NY+ D+F  L    E+++ 
Sbjct: 236 NADGTFSPLAAKHVDTGMGFERVAGIYATTKGFKDFSRDPSNYNADVFAPLFAKIEELSK 295

Query: 262 MKYEGN------------NI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
             Y G             NI +  RV+ DH R  S  IAD ILP NEGR YV+RRI+RR 
Sbjct: 296 KTYNGTVPTRREGLGEQENIDIAFRVLADHARCVSCAIADNILPGNEGRNYVIRRILRRG 355

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL-- 366
           + Y + L         L+  +   +G+ +PEL + + +I   +RSE+E FG+TL++GL  
Sbjct: 356 ILYGKKLNLATGFFEQLVAPVVESLGAVFPELKERQDIIRRVIRSEEESFGRTLEKGLQL 415

Query: 367 ------VLLD-------------GVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILC 406
                 +LLD             G ++++G     L G   F+LYDT+G P+D+ Q +  
Sbjct: 416 FNEGAKLLLDAHPIKGQADVPGVGTITNIGGVTRFLGGKFVFRLYDTYGFPVDMTQLLAT 475

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----EKYGATQFIGYDL 462
            RGLA ++++ F   +++Q+ R+RA      +   E I  + +    E    T+FIGYD 
Sbjct: 476 ERGLA-VNMVEFASEMQQQQDRSRA------AQKKEVIVAATEGDNTEAAQPTKFIGYDR 528

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L        D +VL              +VK             + + + +VFDQTPFYA
Sbjct: 529 LTA------DAQVL-------------DVVK-------------TDKDLFLVFDQTPFYA 556

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH------AIVERGILRTEMSLVLTID 576
           E GGQ GD G    DG    I    K   G F+H       A V R +        L + 
Sbjct: 557 EMGGQTGDHGVVKIDGQTFAILATVKDKAGRFLHKLAPACAADVAR-LNPVGKKAALGVS 615

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +S +HSA HL+H AL   LG+HV Q G+  T + +RFD TH + +T  ++  +E
Sbjct: 616 PLARRAISRHHSAEHLVHWALRKTLGTHVRQAGTSKTKERMRFDFTHFEALTPEQIAEVE 675

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN  I  N   V       D    G  A  G KY   VRVV +     G +S  LCGG
Sbjct: 676 RLVNSKILSN-DKVEAYETEFDKKPEGTLAFFGEKYGKIVRVVDI-----GGYSRELCGG 729

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THVS+T EI L  IV+E +I AG RR+EA+ GQ A   +   +  LK++   L     +V
Sbjct: 730 THVSTTSEIGLFKIVAEMAIAAGTRRLEAVAGQAAYDFVEEHETALKAVTHKLNAGPQDV 789

Query: 757 VGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELK 810
             +++ +     E  +KL+    K    L  ++L+    A   + F++  +S  +   L+
Sbjct: 790 AQKLDSLLAHQKELEKKLKAYEQKAAAGL-ADELAAKATARDGLKFVTATVSIDNQDALR 848

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           S+   +  K+  G++ L G +   +AS+++  +
Sbjct: 849 SLGSQVLHKLGEGVVTL-GAALGDRASLVVYCS 880


>gi|327330410|gb|EGE72159.1| alanine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 313/926 (33%), Positives = 478/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD   V +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VEVV  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEVVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA   GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKVMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|242085328|ref|XP_002443089.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor]
 gi|241943782|gb|EES16927.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor]
          Length = 1006

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 284/767 (37%), Positives = 405/767 (52%), Gaps = 71/767 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  ++ FF    H   PSS ++P +DPTL+F N+GM  +K +F G   P      + +A
Sbjct: 64  VREQYISFFVSKEHTRWPSSPVVPVDDPTLLFANAGMNQYKPVFLGTAAPDSPLGRLRRA 123

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ + L
Sbjct: 124 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTQVYKL 182

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        E+  +W K   L  +K++   + DNFW M +TGPCGPC
Sbjct: 183 PTDRVYATYFGGDEKSGLAADVESKNIWLKY--LPKEKVLPFGSKDNFWEMGDTGPCGPC 240

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI FD+ G      L  + +     IEIWNLVF+QF ++       LP   +DTGMG E
Sbjct: 241 TEIHFDRIGNRDAASLVNNDD--PTCIEIWNLVFIQFNREADGSLRPLPAKHVDTGMGFE 298

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEG----NNI----VNHRVIVDHLR 280
           R+ ++LQ K +NYD D+F  +  A  Q+ G     Y G    ++I    + +RV+ DH+R
Sbjct: 299 RLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPYSGKVGSDDIGKVDMAYRVVADHIR 358

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + SF IADG  P NEGR YVLRRI+RRA+ +  + L   +     L+      MG  +PE
Sbjct: 359 TLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVNVFVQLMGDVFPE 418

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHG 395
           L   +  I++ +R E+E F  TL +G        D V  + G   +L+G  AF L+DT+G
Sbjct: 419 LKDNEKKIKDIIRDEEESFENTLAKGYEKFKKAADAVKDNGGT--VLSGQDAFVLWDTYG 476

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL  +D   FN ++EE R +AR                + + K G  
Sbjct: 477 YPIDLTEVMAIDYGLT-VDKEGFNASMEEARQKAR----------------NARNKSGGK 519

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
             I  D    +   K+        P         S+VKAI    E +  A   +   +V 
Sbjct: 520 S-IALDANATAHLRKQGLASTDDNPKFLWPKEHESVVKAIYTGSEYITTATGDEDFGLVL 578

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVL 573
           + T FYAE GGQ+ DTG   G      + +VQ  A G  +H     +G  +L    S++ 
Sbjct: 579 ESTSFYAEQGGQIFDTGSIEGSFGTFNVNNVQVFA-GYVLHIGSFAKGSKVLSLGDSVIC 637

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +DY  R  ++ NH+ TH+L+ AL  +LG HV Q GS + P+ LRFD +H KP+   +L+
Sbjct: 638 KVDYNRRTLIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLR 697

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV----------- 681
            IE  VN  I   L V    +  EDA   +G  A+ G  Y D VRVVSV           
Sbjct: 698 KIESIVNQQIKDELGVYALEIKLEDAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLADP 757

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           + ++    S+ LCGGTH+++T +     ++SE  I  G+RRI A+T 
Sbjct: 758 DSKEWLSISTELCGGTHITNTRDAKAFALLSEEGIAKGVRRITAVTA 804


>gi|315108664|gb|EFT80640.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 312/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD   V +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDVVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ  G +    D A+  V + L
Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTKL 889


>gi|302838115|ref|XP_002950616.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f.
           nagariensis]
 gi|300264165|gb|EFJ48362.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f.
           nagariensis]
          Length = 1143

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 293/809 (36%), Positives = 420/809 (51%), Gaps = 95/809 (11%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGM-------------------VP--- 45
           R  F EFF+   H    SSS++P NDPTL+FTN+GM                   +P   
Sbjct: 183 RAAFNEFFETKAHTYWASSSVVPHNDPTLLFTNAGMNQASDQSQGQANWQHHHAYLPHSW 242

Query: 46  FKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100
           FK +F G   P       +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG 
Sbjct: 243 FKPVFLGTVDPNSDMGKLKRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 302

Query: 101 YFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKII 152
           YFKE AI  AW+LLTK + L   RLY T +          D+EA ++W +   L   +++
Sbjct: 303 YFKEEAISWAWELLTKWYKLPADRLYATYFRGDPGQGLPADDEAREIWLRF--LPESRVL 360

Query: 153 RITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFE 209
                +NFW M + GPCGPC+EI FD+     GG   +   + +    +EIWN VF+QF 
Sbjct: 361 PYGNKENFWEMGDQGPCGPCTEIHFDR----IGGRDAADLVNADDPNVLEIWNNVFIQFN 416

Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI 269
           ++       LP   +DTGMGLER+ +VLQ K +NY  DLF  +  A +QVTG +   + I
Sbjct: 417 REPDGTLKTLPAKHVDTGMGLERITSVLQGKMSNYATDLFGPIFDAIQQVTGARTYTDKI 476

Query: 270 ---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTE 319
                    + +RV+ DH+R+ SF IADG  P NEGR YVLRRI+RRA+ Y R  LG  E
Sbjct: 477 GKEDADGVDMAYRVVADHIRTLSFSIADGARPGNEGRDYVLRRILRRAVRYGRETLGAKE 536

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
                L+  +    G  +PEL++ +  I   LR E+  F +TL +G+       S    D
Sbjct: 537 GFFAGLVDVVVANFGGFFPELVKQRDTIYSVLREEEAAFSRTLVKGIERFKKAAS-AATD 595

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
             + G  AF L+DT+G P+D+ Q +   RG+  +D+ ++  AL E R ++R         
Sbjct: 596 NKIPGYEAFVLWDTYGFPVDLTQLMAEERGMT-VDMPAYEAALNEAREKSRQGG------ 648

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
                      K  A   I ++    + +++ +   L    P   ++ VS+ V AI+  G
Sbjct: 649 -----------KKAAGAGIKFE-AEATGWLQSNGVPLTNDAPKYGSSDVSAKVLAILTPG 696

Query: 500 EIV----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIF 554
             V    E A     V +V D T FYAE+GGQ+GDTG   G +G  L ++D Q  A G  
Sbjct: 697 GFVASTSEAADQDGPVGLVLDTTSFYAESGGQIGDTGAIRGPEGAALVVSDCQVAA-GFV 755

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H         R    + +++DY+ R  +  NH+ TH+L+ AL + LG HV Q GS + P
Sbjct: 756 LHVGEASVAPFRVGDEVTVSVDYERRSLIKPNHTFTHVLNFALKSTLGDHVDQKGSIVLP 815

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYN 673
           D LRFD +++ P+ + +L ++E    + +A  +PV +  +    A + +G  A+ G  Y 
Sbjct: 816 DKLRFDFSNAGPVEANQLAAVEKICREAVAAAMPVHSGEVPLAQARSINGLRAVFGEVYP 875

Query: 674 DRVRVVSV---------EYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           D VRVVS+         + +D      S   CGGTH+S+T E     ++SE  I  GIRR
Sbjct: 876 DPVRVVSIGRAVEELLADPKDAANAAFSIEFCGGTHLSNTSEAEAFALLSEEGIAKGIRR 935

Query: 723 IEAIT-GQRARSHLMGQDEK--LKSLASF 748
           I A+T G   R+     D K  L S+A+ 
Sbjct: 936 IVAVTRGDAVRAIEAAADLKAELASIATL 964


>gi|254581276|ref|XP_002496623.1| ZYRO0D04378p [Zygosaccharomyces rouxii]
 gi|238939515|emb|CAR27690.1| ZYRO0D04378p [Zygosaccharomyces rouxii]
          Length = 956

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 318/970 (32%), Positives = 492/970 (50%), Gaps = 103/970 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            +++R  FL+FF+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P       
Sbjct: 11  ATNVRKAFLDFFKSKDHKFVASSPVVPYDDPTLLFANAGMNQYKPIFLGTVDPSSDFYHL 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  AW+LLTK +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKQGAISYAWELLTKVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   RLY+T ++ D         EAF+LWK + G+    I+     DNFW M + GPCG
Sbjct: 131 GLPADRLYVTYFEGDPKNGLEADMEAFELWKSV-GVDESHILPGNAEDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI FD+     GG   +S    +    +E+WNLVFMQF ++       LP   IDTG
Sbjct: 190 PCSEIHFDR----IGGRNAASLVNMDDPDVLEVWNLVFMQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           MG ER+ ++LQ+  +NYD D+F  L     +VTG++ Y G       + I   +RV+ DH
Sbjct: 246 MGFERVVSILQDYRSNYDTDVFTPLFARIHEVTGVRPYAGKFGAEDTDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+  F IADG +P NEGRGYVLRRI+RR   +AR  + Y        L+P L +++   
Sbjct: 306 VRTLVFAIADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGDFFSRLVPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDT 393
           +PE+ +    + E L  E+  F KTLDRG  L +      +  GK + L+G   ++LYDT
Sbjct: 366 FPEVAKDPSYLFEILNEEEVSFAKTLDRGERLFEKYADAATSSGK-KTLDGLQVWRLYDT 424

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+ + +   +GL  ID   F +A +E    ++                    K  
Sbjct: 425 YGFPVDLTELMAEEKGLT-IDGPGFEKAKQESYEASKRGG-----------------KKD 466

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
             + +  ++   S+   E+      +    + N  S+I+K       + E +  G+K  V
Sbjct: 467 GAEVLKLNVHEISELNGENVPKTKDEYKYGMENVDSTILKLHDGTKFVNEISEPGKKYGV 526

Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +  G L     ++
Sbjct: 527 ILDKTCFYAEQGGQEYDTGKLVIDDVAEFNVENVQ-LYNGFVFHTGSLLEGKLSVGNKII 585

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + D   R  +  NH+ TH+L+ AL  +LG+ + Q GS + P+ LRFD +H K + + E+
Sbjct: 586 ASYDELRRFPIKNNHTGTHILNFALREVLGNDIEQKGSLVAPEKLRFDFSHKKGMAADEI 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681
             +ED  N  I +N+ V  + +   DA +  G  A+ G  Y D VRVVSV          
Sbjct: 646 LKVEDICNKQIKENMSVYYKDVPLTDAKSIYGVRAVFGETYPDPVRVVSVGKSVDDLLAN 705

Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
              E+   +S   CGGTHV  TG+I +  I+ ES I  GIRRI A+TG  A       +E
Sbjct: 706 PSNEEWSKYSVEFCGGTHVVKTGDIKVFVILEESGIAKGIRRIVAVTGSEAYEAQRIANE 765

Query: 741 -------------------KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI-------H 774
                              KLK L+  L     +VV + +E+  ++ K++ +        
Sbjct: 766 FDKELNAVDRLPFSPLKEKKLKELSVKLGQLSISVVSK-QELKTKFAKIEKVVKDEIKTR 824

Query: 775 AKRKLQLNVEDLSCH--KIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS-GIIMLVGI 830
           AK++ +  ++++  +  K  +  F++  +    ++K +   ++ ++   +   I +  G 
Sbjct: 825 AKQESKKTLDEVKEYFAKNENSQFLAKFVDIPTNAKAITEAVNYVKSSAKDKSIYLFTGN 884

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
             E K +    +++  L +   +D + ++ +V G  GG  GGR ++ Q  G     A  A
Sbjct: 885 DPEGKIAHGCYISDAALSK--GIDGSTVAKQVSGIIGGKAGGRGNVFQGMGDKPTAAGDA 942

Query: 889 IAGVASFLKK 898
           +A V    K+
Sbjct: 943 VAEVEKLFKE 952


>gi|327443563|gb|EGE90217.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
          Length = 892

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 312/926 (33%), Positives = 478/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++     V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKAPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|313764300|gb|EFS35664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313816208|gb|EFS53922.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313827649|gb|EFS65363.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|314915290|gb|EFS79121.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918160|gb|EFS81991.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920236|gb|EFS84067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314931759|gb|EFS95590.1| alanyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955561|gb|EFS99962.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958056|gb|EFT02159.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314967492|gb|EFT11591.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|315098688|gb|EFT70664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315101309|gb|EFT73285.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|327450628|gb|EGE97282.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327454034|gb|EGF00689.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753292|gb|EGF66908.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
 gi|328754046|gb|EGF67662.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
          Length = 892

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 311/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ  G +    D A+  V + L
Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTEL 889


>gi|156839933|ref|XP_001643652.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114272|gb|EDO15794.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 956

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 280/767 (36%), Positives = 418/767 (54%), Gaps = 66/767 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62
           +R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P  +  T    
Sbjct: 14  VRNTFLDYFKSKEHKFVRSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPSSEFYTLKRA 73

Query: 63  -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ + + 
Sbjct: 74  YNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTQVYSIP 133

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ DE        EA +LW+ + G+  D I+     DNFW M E GPCGPCS
Sbjct: 134 ADRLYVTYFEGDEKQGLEPDHEARELWRSV-GVPDDHILPGNAKDNFWEMGEQGPCGPCS 192

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +E+WNLVFMQ+ ++  +    LP   IDTGMG 
Sbjct: 193 EIHYDR----IGGRNAAHLVNQDDPDVLEVWNLVFMQYNREQDRSLKSLPAKHIDTGMGF 248

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ER+ +VLQ+  +NYD D+F+ L +A +++  +     K+   ++      +RV+ DH+R+
Sbjct: 249 ERLVSVLQDVRSNYDTDVFQPLFKAIQEIANVRPYTGKFGAEDVDGIDTAYRVLADHVRT 308

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYPE 339
            +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L+P L  ++   +PE
Sbjct: 309 LTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSRLMPTLIEQVKDIFPE 368

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLP 397
           + +    + E L  E+  F KTLDRG  L +   +   + E   L+G   ++LYDT+G P
Sbjct: 369 VAKDPSFVAEILDEEEASFSKTLDRGEKLFEKYAAAASQTESKTLDGKQVWRLYDTYGFP 428

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   +GL  ID   F +A +E      A   G     ++ +  ++ E       
Sbjct: 429 VDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDNSDLLKLNVHE------- 477

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                L   K  K D      K   D  +G  +I+K    +  + E    G+K  ++ D 
Sbjct: 478 --LSQLNEEKIAKSDD---SSKYGFDNVDG--TILKLYDGEQFVDEITEPGKKYGIILDN 530

Query: 518 TPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I D +    + +VQ     +F   ++VE G L     ++   D
Sbjct: 531 TCFYAEQGGQEYDTGKIIIDDVAEFNVENVQLYNGYVFHTGSLVE-GKLSVGDKIIAAYD 589

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L++AL   LG+ V Q GS + P+ LRFD +H K ++  EL+++E
Sbjct: 590 ELRRHPIKNNHTGTHILNYALKETLGNDVDQKGSLVAPEKLRFDFSHKKALSLDELRNVE 649

Query: 637 DNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV-----------EYE 684
           +  N  I  N+ V  + +  + A   S   A+ G  Y D VRVVSV             E
Sbjct: 650 EVCNQQIKDNMAVYYKEVPLDLAKTISSVRAVFGETYPDPVRVVSVGKPIDEILANPSNE 709

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +   +S   CGGTHVS TG+I    I+ ES I  GIRRI A++G  A
Sbjct: 710 EWNKYSIEFCGGTHVSKTGDIKYFIILEESGIAKGIRRIVAVSGTDA 756


>gi|290986366|ref|XP_002675895.1| alanyl-tRNA synthetase [Naegleria gruberi]
 gi|284089494|gb|EFC43151.1| alanyl-tRNA synthetase [Naegleria gruberi]
          Length = 957

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 312/960 (32%), Positives = 491/960 (51%), Gaps = 108/960 (11%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           IR  F+EFF+K   H  +PSSS++P  DPTL+FTN+GM  FK IF GQ  P       + 
Sbjct: 20  IRKQFVEFFEKKYEHTFVPSSSVVPHEDPTLLFTNAGMNQFKAIFLGQASPDSSLAKLKR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LLT+ + L
Sbjct: 80  AANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAITWAWELLTEVYGL 139

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           ++ RLY+T +          DEEA ++W +   +  D I+  +  DNFW M +TGPCGPC
Sbjct: 140 EKDRLYVTYFGGNEKLNLPADEEAKQIWGQF--VPDDHILPGSMKDNFWEMGDTGPCGPC 197

Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG   +   + +    +EIWN VFM+F ++  Q    LP   +DTGMG
Sbjct: 198 SEIHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFMEFNRKEDQTLEYLPAKHVDTGMG 253

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN---NIVNH-----RVIVDHLR 280
           LER+ ++LQ K +NYD D+F  + +A ++ TG + Y G      V+H     RVI DH+R
Sbjct: 254 LERLVSILQNKMSNYDTDVFMPIFEAIQKETGSRPYTGKLGAEDVDHIDTAYRVIADHIR 313

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           +    ++DG  P N GRGYVLRRI+RRA+ +   +   +  +  L   +   MG  +PEL
Sbjct: 314 TLVIALSDGGYPDNTGRGYVLRRIVRRAVRFGEFMNAKKGFLTRLASCVVELMGDFFPEL 373

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
            +    +EE ++SE+  F KTL  GL   + +   +    + +++G  AFKLY T+G P+
Sbjct: 374 KKNSEKVEELIQSEEVLFAKTLRVGLKFFNRIAEKMKSNGESVVSGPDAFKLYATYGFPV 433

Query: 399 DIMQDILCARGLAGIDIISFNQALEE-----QRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           D+   +   +G+  +D++ + + +E+     Q ++  A  + LG   T+K+   LK    
Sbjct: 434 DLTLIMAQEQGMT-VDMVEYKKEMEKHATASQGTKQEATDMKLGVIETDKLQNELK--IE 490

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            TQ          K++ E+     Q   + + +  S  V+ +  + E V        + +
Sbjct: 491 PTQ-------DDIKYVWEN----IQAKVVAIFSESSGFVEELNTECEEV-------NIGI 532

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + DQT FYAE GGQ  D G        L++ +VQK A G  +H   V    L   +++  
Sbjct: 533 ILDQTNFYAEGGGQAPDNGVLRIGETELKVVNVQKFA-GYILHIVNVSESKLAGNVTVGT 591

Query: 574 TI----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           T+    +Y+ R  ++ NH++TH+L+ AL  +LG+   Q GS +  + L FD + +K  + 
Sbjct: 592 TVSSEVNYERREPIAANHTSTHMLNFALRKVLGTDCDQQGSIVKEEELCFDFSAAKAPSV 651

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV 688
            ++  +E  VND+I  + PV +++  R+ A   +G  A+    Y ++VRVVS+  +   +
Sbjct: 652 EQVAEVEKIVNDLIVADHPVFSKVQERDAAYEINGLRAMFSANYGEQVRVVSIGQDSDSI 711

Query: 689 H-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                       S   CGGTH+  T +     I+SE SI  G RRI A+T + A+  +  
Sbjct: 712 MTDRSNEKWRLISVEFCGGTHLKQTSQAQTFVILSEKSISTGKRRIVALTRKAAKEAVER 771

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY---------------RKLQLIHAK-RKLQL 781
             +    +    K+S      R  E+  E                ++L+    K RK+Q 
Sbjct: 772 AQKFSVKIDELEKLSDELFCPRYYELTSELTLLTDIPLLSKKAFEKRLEACQTKVRKIQQ 831

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--------KKIQSGI----IMLVG 829
           + +     K      +S +   ++ K LKS++  L+        KK+   +    + L+ 
Sbjct: 832 SQKKDDAEKAN--QLISQLKESIEQKSLKSLVYQLEDGSDQKFVKKVIDALTTIPVCLIS 889

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + +K   VL  V ++     +A        KV+  G GGG+P  AQ  G + +K  +A+
Sbjct: 890 KADDKTIIVLASVPQEQTATLSANTWVTEVCKVV-SGKGGGKPIFAQGRGSDVSKVAEAV 948


>gi|313791987|gb|EFS40088.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313802063|gb|EFS43297.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313838884|gb|EFS76598.1| alanyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314962643|gb|EFT06743.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315077859|gb|EFT49910.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327453294|gb|EGE99948.1| alanyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 312/926 (33%), Positives = 478/926 (51%), Gaps = 72/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
           +     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P+
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+
Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY                           V + V  I+  G  V  A  G  VE+V  +T
Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE GGQ  D+G    +GI  ++ DVQ    G+ VH   ++ G L     +   ++  
Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQCPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+ 
Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  +  V    M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTH
Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  
Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745

Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812
           RV     ++ E  RKL      R+L   V+D+        +F  ++  +  V   +L+++
Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|62897207|dbj|BAD96544.1| alanyl-tRNA synthetase variant [Homo sapiens]
          Length = 968

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 297/801 (37%), Positives = 430/801 (53%), Gaps = 72/801 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                  RG +   +  K    L         N V++++ A+ ++   VEE  +GQ+  V
Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           V D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L+ 
Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +
Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           ++ ++K  E+  N++I     V T+      A A  G  A+    Y D VRVVS+     
Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704

Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L
Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764

Query: 736 MGQDEKLKSLASFLKVSQGNV 756
                K +SL   L V +  V
Sbjct: 765 ----RKAESLKKCLSVMEAKV 781


>gi|26336489|dbj|BAC31927.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 293/795 (36%), Positives = 426/795 (53%), Gaps = 80/795 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   V+E V+GQ+ 
Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS +TPD LRFD T   
Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVTPDRLRFDFTAKG 642

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+   
Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762

Query: 734 HLMGQDEKLKSLASF 748
            L   +   KSL++ 
Sbjct: 763 ALRKSETLKKSLSAM 777


>gi|109148542|ref|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|115502460|sp|P49588|SYAC_HUMAN RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; AltName:
           Full=Renal carcinoma antigen NY-REN-42
 gi|15079238|gb|AAH11451.1| Alanyl-tRNA synthetase [Homo sapiens]
 gi|119572224|gb|EAW51839.1| alanyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|123981462|gb|ABM82560.1| alanyl-tRNA synthetase [synthetic construct]
 gi|123996297|gb|ABM85750.1| alanyl-tRNA synthetase [synthetic construct]
          Length = 968

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 297/801 (37%), Positives = 430/801 (53%), Gaps = 72/801 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                  RG +   +  K    L         N V++++ A+ ++   VEE  +GQ+  V
Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           V D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L+ 
Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +
Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           ++ ++K  E+  N++I     V T+      A A  G  A+    Y D VRVVS+     
Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704

Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L
Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764

Query: 736 MGQDEKLKSLASFLKVSQGNV 756
                K +SL   L V +  V
Sbjct: 765 ----RKAESLKKCLSVMEAKV 781


>gi|325179830|emb|CCA14233.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 1022

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 282/781 (36%), Positives = 422/781 (54%), Gaps = 70/781 (8%)

Query: 4   VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
            + IR TF+ +F+K+    H   PS  +IP +DPTL+F N+GM  FK IF GQ  P +  
Sbjct: 61  ATRIRETFINYFRKHSFHPHTFYPSCPVIPLDDPTLLFINAGMNQFKPIFLGQVDPNHPM 120

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              Q     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+  I+++++LLT
Sbjct: 121 SKLQRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKQETIEMSFNLLT 180

Query: 116 KEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           K + +D  RLY T +          DEE   +W K   L + +++     DNFW M + G
Sbjct: 181 KVYQIDAERLYATYFGGDPKQQLLPDEETRAIWLKY--LPSSRVLPFGCKDNFWEMGDIG 238

Query: 168 PCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCGPC+EI +D+ G      L  +  +    IEIWN VF+QF ++N  +   LP   +DT
Sbjct: 239 PCGPCTEIHYDRLGNRDAAALVNA--DVPDVIEIWNNVFIQFNRENSGKLVPLPNKHVDT 296

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVD 277
           GMG ER+A++LQ KT+NYD D+F  L    + +T  + YEG        N  + +RV+ D
Sbjct: 297 GMGFERLASILQGKTSNYDTDVFTPLFHTIQSITKAEPYEGKLGAEDANNKDMAYRVVAD 356

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG++P+N+GRGYVLRRI+RRA+ Y  + L   +  +  L+  +   M + 
Sbjct: 357 HIRTLTFAIADGVMPSNDGRGYVLRRILRRAVRYGQQFLNAPKGFLNQLVRVVVDMMHNT 416

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKD------EILNGDVAF 388
           +PEL   +  +E+ +  E+E FG+TL++G+     ++  +   +D        ++G  AF
Sbjct: 417 FPELKVKQNEVEQAILEEEESFGRTLNKGIEKFRKIVESVQGARDGEKQQAPAISGKDAF 476

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
            LYD+ G PLD+ Q +    G+  +D+  + + ++ Q  R++      GSG   +     
Sbjct: 477 FLYDSMGFPLDLTQVMAEEEGMT-VDVEGYGEQMKLQSERSK-QDRKKGSGDNARPLVLE 534

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
            ++  A       L  G     +D K    K    L   V +I        E V  AV+ 
Sbjct: 535 AQETNAL------LELGIPTTNDDAKYEWNKA---LQAKVVAIFTTTDSSCEFV-SAVTA 584

Query: 509 QK---VEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVER 562
           QK   + +V D+T FYA+AGGQ+ DTG    D   G R  I  V+  A G  +H   +E 
Sbjct: 585 QKHDRIGIVLDRTSFYAQAGGQVYDTGSLEKDQPAGTRFNIDAVESYA-GYVLHAGTLES 643

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G L+    +   +DY  R +++ NH+ TH+L+ AL  +L  +V Q GS +    +RFD T
Sbjct: 644 GSLQVGDDISCQVDYDRRSKIAPNHTMTHVLNFALRKVLVKNVDQRGSLVDDVRMRFDFT 703

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
            +KP++ ++L+++E+   + I Q L V T+  ++ DA    G  A+ G  Y D VRVVS+
Sbjct: 704 TNKPLSPSQLQAVENMCENSIKQELQVFTKNTSQTDARRIQGLRAVFGETYPDTVRVVSI 763

Query: 682 -----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                      E       S   CGGTH+ +T +     +  E +I  GIRRI A TGQ 
Sbjct: 764 GQMIDPMLKDPENSTWSNFSVEFCGGTHLENTKQARKFVLYEEGAIARGIRRISAYTGQE 823

Query: 731 A 731
           A
Sbjct: 824 A 824


>gi|169154547|emb|CAQ13591.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS)
           [Danio rerio]
          Length = 963

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 319/978 (32%), Positives = 488/978 (49%), Gaps = 109/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A
Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G 
Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +        
Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512
               D LR       D     +    D  N         V A+ ++   V+E ++GQ+  
Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FYAE GGQ  D G  + +    +   V+  +  G +V H     G L+    L
Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 586

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 587 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 645

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV---- 681
           ++  E+    +IA    V        DA  + A A+ G +      Y D VRVVS+    
Sbjct: 646 VRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 700

Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                      G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  
Sbjct: 701 EELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKA 760

Query: 735 LMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKRKLQ 780
               D          EK+K+ +   K  Q  +    E     +  ++RK ++  + + L+
Sbjct: 761 QRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLK 820

Query: 781 LNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQ 821
             ++DL     ADV                     +  + S   +K L   +  L+    
Sbjct: 821 KIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSP 880

Query: 822 SGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               ML  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G
Sbjct: 881 QTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATG 939

Query: 880 PNGNKADQAIAGVASFLK 897
            N     +A+   + F +
Sbjct: 940 RNTQCIQEALQLASEFAR 957


>gi|84998104|ref|XP_953773.1| alanyl-tRNA synthetase [Theileria annulata]
 gi|65304770|emb|CAI73095.1| alanyl-tRNA synthetase, putative [Theileria annulata]
          Length = 1024

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 286/783 (36%), Positives = 445/783 (56%), Gaps = 62/783 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R  F+++F    H   PSSS++P NDPTL+F N+GM  FK+I  G+     E    + V
Sbjct: 82  VRKQFIDYFVSKNHVHWPSSSVLPNNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 141

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   H T+FEMLGN+SFG YFKE AI  AWDLLT  + LD
Sbjct: 142 CNSQKCIRAGGKHNDLDDVGQDCYHQTYFEMLGNWSFGAYFKEEAISYAWDLLTNVYKLD 201

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY+T +      + D E  ++W K   + A +I+   + DNFW MA+TGPCGPC+EI
Sbjct: 202 PNRLYVTYFGGDKSCEVDNETREIWLKF--MPASRILPFGSKDNFWEMADTGPCGPCTEI 259

Query: 176 FFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            +D      GG   S+    +    +EIWN+VFMQ+ +        LPK  +DTGMGLER
Sbjct: 260 HYDH----IGGRDASTLVNADDPNVVEIWNIVFMQYNRGENGVLERLPKGCVDTGMGLER 315

Query: 233 MATVLQEKTNNYDIDLFKHLIQA-SEQVTGMK-YEGNNI---VNHRVIVDHLRSSSFLIA 287
           + +VL    +NY+ DL   +IQ   E + G + Y+G N    V +RV+ DH+R  S  I+
Sbjct: 316 LCSVLNNTNSNYNTDLLNDIIQYIRELLPGFESYKGGNTPLDVAYRVVSDHVRCLSVAIS 375

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           D + P+NEGRGYVLRRI+RRA+ Y R      EP +  L+P++   +G+AYP L+  +  
Sbjct: 376 DKVYPSNEGRGYVLRRILRRAVRYCRDYFNTKEPFLYKLVPSVTKLLGNAYPNLLTEQAN 435

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  +  E++ F +TLD+G+     ++S  G ++++NG  AF LY ++G PLD+   +L 
Sbjct: 436 IESIVLDEEKLFLQTLDKGVEKFKKMVSKSG-NKVINGPDAFLLYQSYGFPLDLT--MLM 492

Query: 407 ARGLA-GIDIISFNQALE--EQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           AR L   +D+  +   L+  +Q+S +R ++ L       +K+  SL      T      +
Sbjct: 493 ARELGITVDVDGYYSELKLHQQKSESRVYTDLNSLESRCDKLLKSLSADRINT------I 546

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE------VVFD 516
           L+    +  D K+   K   D ++ V+ + KA +     ++  +S  + +      +V D
Sbjct: 547 LKMCNNVYTDDKL---KYDWDSSDPVAKVYKAKLVSTVTLDSVMSELQCDDDDLVCLVMD 603

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER-GILRTEMSLVLTI 575
           +TPFYAE GGQ+ DTG  I D   L++  V K + G+  H  + ++ G+LR      L +
Sbjct: 604 RTPFYAEGGGQIYDTG-YIND---LEVLRVYKMS-GLVFHFCLSKKSGVLRCGDEFELKV 658

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY+ R +++ NH++TH+L+  L  +L     Q GS +  + L+FD  +++ +    ++ I
Sbjct: 659 DYERRVRVASNHTSTHILNFVLRDMLDESSYQRGSQLDEEKLKFDYCYNQQLPEDLIRRI 718

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--ED-GGVHSS 691
           ED + D +    P+ TR +  ++A+   G  A    KY + VRVV+V+   ED  G H+S
Sbjct: 719 EDRMMDFVRSEAPLRTREIEYKNALEIPGIRANFDEKYPEVVRVVNVQLGSEDFSGEHTS 778

Query: 692 A-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDEKLKSLAS 747
             +CGGTH+++T  I  + +V E  I  G+RR+  +T ++ R   + L+  +++L+ L  
Sbjct: 779 TEVCGGTHLTNTKTIQDVAVVGEEGISKGVRRLTLVTNEQCRKSKADLLHYEKRLEELEK 838

Query: 748 FLK 750
            LK
Sbjct: 839 NLK 841


>gi|281350877|gb|EFB26461.1| hypothetical protein PANDA_021488 [Ailuropoda melanoleuca]
          Length = 976

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 296/806 (36%), Positives = 427/806 (52%), Gaps = 84/806 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF
Sbjct: 67  SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCG
Sbjct: 127 GIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTG
Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +         
Sbjct: 422 VDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGDDLIMLDI--------- 467

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSG 508
              + LR       D       P  +  +  S         + V A+ +    VEE  +G
Sbjct: 468 YAIEELREKGLEATD-----DSPKYNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTG 522

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVER 562
           Q+  VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     
Sbjct: 523 QECGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVR--GGYVLHIGTIY 580

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G LR    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T
Sbjct: 581 GSLRVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFT 639

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
               +++ ++K  E+  N +I    PV T+      A A  G  A+    Y D VRVVS+
Sbjct: 640 AKGAMSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSI 699

Query: 682 -----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                E  D      G + S   CGGTH+ ++       +VSE +I  GIRRI A+TG  
Sbjct: 700 GVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAE 759

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNV 756
           A+  L     K +SL + L + +  V
Sbjct: 760 AQKAL----RKAESLKNSLSIMEAKV 781


>gi|74213943|dbj|BAE29394.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMRDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   V+E V+GQ+ 
Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T   
Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+   
Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762

Query: 734 HLMGQDEKLKSLASF 748
            L   +   KSL++ 
Sbjct: 763 ALRKSETLKKSLSAM 777


>gi|34610207|ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|47117019|sp|Q8BGQ7|SYAC_MOUSE RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|23270912|gb|AAH33273.1| Alanyl-tRNA synthetase [Mus musculus]
 gi|26351767|dbj|BAC39520.1| unnamed protein product [Mus musculus]
 gi|148679538|gb|EDL11485.1| alanyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 968

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   V+E V+GQ+ 
Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T   
Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+   
Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762

Query: 734 HLMGQDEKLKSLASF 748
            L   +   KSL++ 
Sbjct: 763 ALRKSETLKKSLSAM 777


>gi|169154546|emb|CAQ13590.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS)
           [Danio rerio]
          Length = 988

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 319/978 (32%), Positives = 488/978 (49%), Gaps = 109/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 31  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 91  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDT
Sbjct: 210 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 265

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 266 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 325

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A
Sbjct: 326 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 385

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G 
Sbjct: 386 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 445

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +        
Sbjct: 446 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 492

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512
               D LR       D     +    D  N         V A+ ++   V+E ++GQ+  
Sbjct: 493 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 551

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FYAE GGQ  D G  + +    +   V+  +  G +V H     G L+    L
Sbjct: 552 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 611

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E
Sbjct: 612 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 670

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV---- 681
           ++  E+    +IA    V        DA  + A A+ G +      Y D VRVVS+    
Sbjct: 671 VRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 725

Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                      G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  
Sbjct: 726 EELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKA 785

Query: 735 LMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKRKLQ 780
               D          EK+K+ +   K  Q  +    E     +  ++RK ++  + + L+
Sbjct: 786 QRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLK 845

Query: 781 LNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQ 821
             ++DL     ADV                     +  + S   +K L   +  L+    
Sbjct: 846 KIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSP 905

Query: 822 SGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               ML  +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G
Sbjct: 906 QTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATG 964

Query: 880 PNGNKADQAIAGVASFLK 897
            N     +A+   + F +
Sbjct: 965 RNTQCIQEALQLASEFAR 982


>gi|301791808|ref|XP_002930871.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 968

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 296/806 (36%), Positives = 427/806 (52%), Gaps = 84/806 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF
Sbjct: 67  SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCG
Sbjct: 127 GIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTG
Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +         
Sbjct: 422 VDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGDDLIMLDI--------- 467

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSG 508
              + LR       D       P  +  +  S         + V A+ +    VEE  +G
Sbjct: 468 YAIEELREKGLEATD-----DSPKYNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTG 522

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVER 562
           Q+  VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     
Sbjct: 523 QECGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVR--GGYVLHIGTIY 580

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G LR    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T
Sbjct: 581 GSLRVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFT 639

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
               +++ ++K  E+  N +I    PV T+      A A  G  A+    Y D VRVVS+
Sbjct: 640 AKGAMSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSI 699

Query: 682 -----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                E  D      G + S   CGGTH+ ++       +VSE +I  GIRRI A+TG  
Sbjct: 700 GVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAE 759

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNV 756
           A+  L     K +SL + L + +  V
Sbjct: 760 AQKAL----RKAESLKNSLSIMEAKV 781


>gi|256383814|gb|ACU78384.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384644|gb|ACU79213.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455443|gb|ADH21678.1| alanine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 896

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 297/932 (31%), Positives = 488/932 (52%), Gaps = 106/932 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P    +T 
Sbjct: 6   TNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT +  FD+D
Sbjct: 66  SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDID 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+GE
Sbjct: 122 KDKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180

Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLER A++
Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFASI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283
            Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH+R++ 
Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNDQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP LI  
Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDK 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           K L+E+T++ E+E+F KTL +G  LL+ ++    K+ + + D A  L++++G P++   +
Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462
           I     +  +DI  F + LE+ +   R     L +   +   F+ LK +   ++F G+  
Sbjct: 418 ISELSNVT-VDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S+  +++ KV+                     Q ++  E+++ Q+  V+ D+TPFYA
Sbjct: 472 ---SETSRDNAKVIY----------------MFTDQKQV--ESITDQEAFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V+ G L+    +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQ-GTLKVNDLVNCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749
           T EI    I    S  +G+ RI+ +T  +  +  + +             +K       L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744

Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
           K  Q                      +++ +++EI ++Y K    LI A + L+      
Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYKDLTP 804

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S +K  ++N +    ++++ K+LK + D L+ K    I++L+  + E    V++ V++ L
Sbjct: 805 SLNK-DNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENNF-VVVAVSQSL 862

Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876
            +++ A+D+       L G    GGG  ++AQ
Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890


>gi|317497358|ref|ZP_07955681.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895427|gb|EFV17586.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 765

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 295/790 (37%), Positives = 436/790 (55%), Gaps = 44/790 (5%)

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD  RLY +VY++D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+
Sbjct: 4   LDPDRLYPSVYEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDR 62

Query: 180 GECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P  +   + +RY+E+WN VF QFE         L   +IDTGMGLER+A V+
Sbjct: 63  GEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVVV 122

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           QE  + +D+D  K +     +V G+ Y  ++   V+ RVI DH+RS++F+++DGI P+NE
Sbjct: 123 QEVDSIFDVDSIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSNE 182

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RLLG     +  +   +  E    YPEL +    I   L  E+
Sbjct: 183 GRGYVLRRLIRRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQEE 242

Query: 356 ERFGKTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++F KT+D+GL +L   +  ++  G  E+   D AFKLYDT+G PLD+  +IL  +G   
Sbjct: 243 KQFNKTIDQGLSILADMEKAMNEKGSKELAGAD-AFKLYDTYGFPLDLTIEILEEKGFT- 300

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + ++ QR  ARA          +   +   +    T+F+GYD L         
Sbjct: 301 VDKEGFEKEMQVQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL--------- 351

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
               C+             + A+  + E+V     G K  +V DQT FYA +GGQ  D G
Sbjct: 352 ---TCEGE-----------ITAMTTETEVVSALNKGDKGTIVADQTAFYATSGGQEADKG 397

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I      ++ DV K + G F H   V  G        V T++ +NR   + NHSATHL
Sbjct: 398 VIISGDASFEVEDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHL 457

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    + LRFD TH  P++  E+  +E  VN+ IAQ+LPVVT+
Sbjct: 458 LQKALREVLGTHVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTK 517

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  +GA AL G KY D VRVVS+     G  S  LCGGTHV +TG I    I+S
Sbjct: 518 VMSMEEAKKTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILS 572

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + +G+RRIEA+T Q   ++   Q+E+LK  A  LK +   ++ R+E +  E ++L+ 
Sbjct: 573 ETGVASGVRRIEAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKS 632

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +L  + L        ++  V  ++  I +VD   L+ + D L++K+  G+I+L
Sbjct: 633 ENESLKSKLAKDALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVL 692

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 K   V +V  E      +A +L +  A  + GGGGGGRP+MAQ+GG N     +
Sbjct: 693 ASQKDGKVFLVAMVTDEAQKAGAHAGNLIKAIAGCV-GGGGGGRPNMAQAGGKNPAGIPE 751

Query: 888 AIAGVASFLK 897
           A+A V   L+
Sbjct: 752 AVAKVKEILE 761


>gi|331703175|ref|YP_004399862.1| alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801730|emb|CBW53883.1| Alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 896

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 297/932 (31%), Positives = 488/932 (52%), Gaps = 106/932 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P    +T 
Sbjct: 6   TNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT  K FD+D
Sbjct: 66  SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKKYFDID 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+GE
Sbjct: 122 KNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180

Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLER A++
Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFASI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283
            Q    N++ D+F   I+  E++T    KY  +N  N            +VI DH+R++ 
Sbjct: 241 FQNTPTNFETDIFYPTIKKVEELTNDQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP LI  
Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLIDK 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           K L+E+T++ E+E+F KTL +G  LL+ ++    K+ + + D A  L++++G P++   +
Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462
           I     +  +D+  F + LE+ +   R     L +   +   F+ LK +   ++F G+  
Sbjct: 418 ISELSNVT-VDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S+  +++ KV+                     Q ++  E+++ Q+V V+ D+TPFYA
Sbjct: 472 ---SETSRDNAKVIY----------------MFTDQKQV--ESITDQEVFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V+ G L+    +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQ-GTLKVNDLINCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVNKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749
           T EI    I    S  +G+ RI+ +T  +  +  + +             +K       L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744

Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
           K  Q                      +++ +++EI ++Y K    LI A + L+      
Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYKDLTP 804

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S +K  ++N +    ++++ K+LK + D L+ K    I++L+  + E    V++ V++ L
Sbjct: 805 SLNK-DNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENNF-VVVAVSQSL 862

Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876
            +++ A+D+       L G    GGG  ++AQ
Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890


>gi|148679537|gb|EDL11484.1| alanyl-tRNA synthetase, isoform CRA_a [Mus musculus]
          Length = 1055

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 97  IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 156

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 157 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 216

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 217 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 275

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTGMGL
Sbjct: 276 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 331

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 332 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 391

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 392 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 451

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 452 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 511

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 512 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 557

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   V+E V+GQ+ 
Sbjct: 558 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 612

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 613 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 670

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T   
Sbjct: 671 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 729

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+   
Sbjct: 730 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 789

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 790 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 849

Query: 734 HLMGQDEKLKSLASF 748
            L   +   KSL++ 
Sbjct: 850 ALRKSETLKKSLSAM 864


>gi|299115131|emb|CBN75498.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 1122

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 286/791 (36%), Positives = 415/791 (52%), Gaps = 83/791 (10%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +V+ +R TF++ F+ K  H   PSS ++P NDP+L+F N+GM  FK +F GQ  P     
Sbjct: 153 SVTKVRQTFIDHFKSKREHTFYPSSPVVPVNDPSLLFANAGMNQFKPVFLGQTDPSSPLA 212

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            + +AV + QKC+RAGGKHNDLD+VGR   HHTFFEMLG +SFG YFKE A++  ++ L 
Sbjct: 213 GLKRAVNS-QKCIRAGGKHNDLDDVGRDVYHHTFFEMLGTWSFGDYFKEEAVEWGFEALN 271

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + F L   RLY T +  DE        E   LW K+  L  D+++     DNFW M + G
Sbjct: 272 EVFGLPADRLYATYFGGDEELGLAPDLETRDLWLKV--LPEDRVMPGDRKDNFWEMGDVG 329

Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           PCGPCSE+ FD+     GG   +S    +    IEIWNLVFMQF +       +LP   +
Sbjct: 330 PCGPCSELHFDR----IGGRNAASLVNMDDPDVIEIWNLVFMQFNRDEAGNLKLLPAKHV 385

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVI 275
           DTG+GLER+ ++LQ+K +NYD D+F  L  A + VTG   YEG             +RV+
Sbjct: 386 DTGLGLERLVSILQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVGLKDTAYRVV 445

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMG 334
            DH R+ SF I DG +PAN+GRGYVLRRI+RRA+ Y + +    P     ++P +  E G
Sbjct: 446 ADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFG 505

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV-LSHLGKDE-ILNGDVAFKLYD 392
             YPEL + +  + E ++ E+E F   L+RG+     V     GK    + GD AF LYD
Sbjct: 506 DMYPELREKEAFVMEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSNTIPGDTAFFLYD 565

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR------------AHSLGLGSGT 440
           + G PLD+ Q +    G+  +D   F   +  Q++R++              ++ LG+  
Sbjct: 566 SMGFPLDLTQVMAEEVGMT-VDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADE 624

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           T ++    +E    T     D  + +       KV+       L +G +    A    G 
Sbjct: 625 TSRL---AEEGVKPTD----DEAKYTWSTTTGNKVVA------LFDGETLSTTASQSGGT 671

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-------GDGIRLQITDVQKKAEGI 553
               +     V ++ D TPFY+EAGGQ+ D+G  +       GD   +++ DV+    G 
Sbjct: 672 AAASSDDATTVGILLDSTPFYSEAGGQVSDSGKLVVSAGGEDGDDGVIEVADVRMFG-GF 730

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +H   +  G L    S+   +DY  RR+++ NH+ TH L++AL   +   V Q GS +T
Sbjct: 731 ALHVGRLVSGSLSVGDSVRCEVDYDRRRKVAPNHTMTHALNYALRKAVDEGVDQKGSLVT 790

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY 672
            + LRFD +H K +T  +L+  E  V  II +   V  +++   +A +  G  A+ G  Y
Sbjct: 791 DEKLRFDFSHGKALTGPQLEESEAIVQRIIQEEKEVYNQVLPLSEAKSIFGLRAVFGEVY 850

Query: 673 NDRVRVVSVEY-----------EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            D VRVVSV +           E+    S   CGGTHV +T E     I  E+++  G+R
Sbjct: 851 PDPVRVVSVGFPVEDMAKDPSREEWATSSVEFCGGTHVGNTREAEAFVITEETAVAKGVR 910

Query: 722 RIEAITGQRAR 732
           RI AITG  A+
Sbjct: 911 RITAITGSAAK 921


>gi|209862801|ref|NP_001093987.1| alanyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|261260086|sp|P50475|SYAC_RAT RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|149038198|gb|EDL92558.1| alanyl-tRNA synthetase [Rattus norvegicus]
          Length = 968

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 293/795 (36%), Positives = 424/795 (53%), Gaps = 80/795 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ +F++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRERFINYFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEAKILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTDGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCQTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 425 TGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---------YAI 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   V+E V+GQ+ 
Sbjct: 471 EELRAKGLEATD-----DSPKYNYHSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 526 GVVLDKTCFYAEQGGQIFDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           R    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T   
Sbjct: 584 RVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGD-ADQKGSLVAPDRLRFDFTAKG 642

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T       A A  G  A+    Y D VRVVS+   
Sbjct: 643 AMSTEQIKKTEEIVNGMIEAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 703 VSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762

Query: 734 HLMGQDEKLKSLASF 748
            L   +   KSL++ 
Sbjct: 763 ALRKSETLKKSLSAM 777


>gi|326519084|dbj|BAJ96541.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1008

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 280/771 (36%), Positives = 404/771 (52%), Gaps = 72/771 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  F++FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P  Q       
Sbjct: 64  VREVFIDFFKSKSHTPWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTASPDSQLGRLSRA 123

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ + L 
Sbjct: 124 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEGAIGYAWELLTQVYKLP 183

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  DE        E+  +W K   L  ++++     DNFW M +TGPCGPC+
Sbjct: 184 TDRIYATYFGGDEKAGLAPDTESKNIWLKY--LPNERVLPFGCKDNFWEMGDTGPCGPCT 241

Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EI FD+ G      L   + +    IEIWNLVF+QF +++      LP   +DTGMG ER
Sbjct: 242 EIHFDRIGNRDAASL--VNNDDPTCIEIWNLVFIQFNRESDGSLRSLPAKHVDTGMGFER 299

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHLRS 281
           + ++LQ K +NYD D+F  L  A  Q+ G+  +           G   + +RV+ DH+R+
Sbjct: 300 LTSILQNKMSNYDTDVFMPLFDAIHQLAGVGIQPYSGKVGSDDVGKVDMAYRVVADHIRT 359

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ +  + L   +     L+      MG  +PEL
Sbjct: 360 LSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVFPEL 419

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHGL 396
              +  I++ ++ E+  F  T+ +G        D V  + G   +L+G  AF L+DT+G 
Sbjct: 420 KDNEKKIKDIIKDEEASFENTIAKGYERFKKAADAVKENGGA--VLSGQDAFVLWDTYGY 477

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL+ +D+  FN ++EE R +AR      G  +       + +    ++
Sbjct: 478 PIDLTEVMAVDFGLS-VDMEGFNASMEEARQKARNARYKAGGKSI------VLDANATSE 530

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                L   +   K   +V             SS+VKAI    E +  A   +   +V +
Sbjct: 531 LRNQGLASTNDSPKFQHEVH------------SSVVKAIYTGSEFIATASGDEDFGLVLE 578

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS----LV 572
            T FYAE GGQ+ DTG   G      + +VQ  A G  +H      G     +S    + 
Sbjct: 579 STSFYAEQGGQIYDTGSIEGPSGSFTVNNVQVFA-GYVLHIGSFLEGPDSKALSVGDEVK 637

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +DY  R  +S NH+ TH+L+ AL  +LG HV Q GS + P+ LRFD +H KP+   +L
Sbjct: 638 CKVDYTRRTLISPNHTCTHMLNFALKEVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDL 697

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV---------- 681
           + IE  VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+          
Sbjct: 698 RKIEYIVNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLAN 757

Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            E ++    S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T + A
Sbjct: 758 PESKEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECA 808


>gi|283781582|ref|YP_003372337.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440035|gb|ADB18477.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 935

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 275/783 (35%), Positives = 416/783 (53%), Gaps = 70/783 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L FFQ  GH    S  L+P  DP+++FT +GM PFK+ F G+ K  +   TT QK
Sbjct: 6   LREKYLAFFQTKGHTRKASDVLVPRWDPSVLFTPAGMNPFKDHFLGKVKLEFTRATTSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+DNVGRT  HHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   +    
Sbjct: 66  CLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTDKKWLGIPGDL 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW--SMAETGP---CGPCSEIFFDQ 179
           L +TVY +D+EA  +W    GL   +I R+  +DNFW  S    GP   CGPCSEI++  
Sbjct: 122 LTVTVYLDDDEAADIWHNEIGLPTSRIERMGEDDNFWPASSPSKGPDGVCGPCSEIYYK- 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237
              +P G         + +EIWNLVF QF +       +  LP  +IDTGMGLER+A+V+
Sbjct: 181 ---LPSG---------KTVEIWNLVFTQFNRVGNPPNNLRPLPSKNIDTGMGLERIASVM 228

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY ID+ + +++A+ +V   KY+   +N    R I DH+R+ +F I + +LP   
Sbjct: 229 QGVDTNYHIDILRPIVEAAAEVCSQKYDPASDNGRRLRRIADHVRACTFAIHENVLPGPN 288

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
              YV+RR++RRA+     +G  +P +  L+P +   M S YPEL +    +++ +++E+
Sbjct: 289 REKYVIRRLLRRAVLDGHQMGLRDPFLYQLVPIVAEMMKSPYPELGETIERVQKGIKAEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
             F  T+D GL  + G+   +   G+  +  G+ A  LY T+G+P ++++++        
Sbjct: 349 SAFFGTIDAGLARISGMFDSMKSEGRVMVAGGEAA-DLYQTNGVPPELVENMAAELNFT- 406

Query: 413 IDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            D   F  A+EE   R+ +   +   +G  E +  +LKE    TQF+GY+          
Sbjct: 407 FDWDGFRTAMEEHGERSGKIADVVFKTGPIEALKRALKE----TQFVGYE---------- 452

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEVVFDQTPFYAEAGGQL 528
                        T   ++ +K +V    +V   EE      V VV D++PFY E+GGQ+
Sbjct: 453 -------------TTETTAEIKGVVAAEHLVDTLEEVGHESPVIVVLDKSPFYGESGGQV 499

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GDTG  +G G + Q+ D QK A+ + +H+  +  G +     +   +D   R  +   HS
Sbjct: 500 GDTGEIVGPGFKFQVIDTQKDAD-LLLHYGHLIEGKMNAGAKVTAKVDTVRRNGIRRAHS 558

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+L +AL   LG    Q GS +  D LRFD  +  P+ + +L  IE  V+  +A   P
Sbjct: 559 ATHILQYALQQTLGKETHQMGSKVEEDQLRFDFGNPSPVDAEQLLVIEKEVHARVAAADP 618

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + +   +A  +GA  L G KY D  R+VS+     G  S  LC GTH+ +T +++  
Sbjct: 619 VAWKFVPLTEARTAGAMMLFGEKYPDPARMVSM-----GSFSKELCAGTHLDNTRDVLAF 673

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I++E  + AG RRI A+TG++A+S        L  LA+ L V    V   V  + ++ R
Sbjct: 674 EIIAEEGVAAGTRRIVALTGEKAKSFSEKTSTALNELANLLGVELLAVPQAVRTLAQQVR 733

Query: 769 KLQ 771
            L+
Sbjct: 734 DLK 736


>gi|81871231|sp|Q8CFX8|SYAC_MESAU RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|26522952|dbj|BAC44844.1| alanyl trna synthetase [Mesocricetus auratus]
          Length = 968

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 293/793 (36%), Positives = 423/793 (53%), Gaps = 80/793 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFAIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDAKILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGLLKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 425 TGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---------YAI 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   VEE V+GQ+ 
Sbjct: 471 EELRAKGLEATD-----DSPKYNYHSDSSGAYVFECTVATVLALRREKMFVEEVVTGQEC 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T   
Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+   
Sbjct: 643 AMSTQQIKEAEEIVNAMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 703 VSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762

Query: 734 HLMGQDEKLKSLA 746
            L   +   +SL+
Sbjct: 763 ALRKAESLRRSLS 775


>gi|37903407|gb|AAP57355.1| Alanyl-tRNA synthase [Mus musculus]
          Length = 968

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   V+E V+GQ+ 
Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T   
Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+   
Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHEGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762

Query: 734 HLMGQDEKLKSLASF 748
            L   +   KSL++ 
Sbjct: 763 ALRKSETLKKSLSAM 777


>gi|1015321|dbj|BAA06808.1| alanyl-tRNA synthetase [Homo sapiens]
          Length = 968

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 296/801 (36%), Positives = 429/801 (53%), Gaps = 72/801 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGK NDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKQNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                  RG +   +  K    L         N V++++ A+ ++   VEE  +GQ+  V
Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           V D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L+ 
Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +
Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           ++ ++K  E+  N++I     V T+      A A  G  A+    Y D VRVVS+     
Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704

Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L
Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764

Query: 736 MGQDEKLKSLASFLKVSQGNV 756
                K +SL   L V +  V
Sbjct: 765 ----RKAESLKKCLSVMEAKV 781


>gi|119484060|ref|XP_001261933.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119410089|gb|EAW20036.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 961

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 289/775 (37%), Positives = 426/775 (54%), Gaps = 80/775 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 16  VRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAKLKSA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + LD
Sbjct: 76  VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGLD 135

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY+T +        + D EA  LW + +G+  D I+     DNFW M + GPCGPCS
Sbjct: 136 PQRLYVTYFEGHEEGGLEPDLEAKALW-RAAGVPEDHILPGNMKDNFWEMGDQGPCGPCS 194

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ +++ +    LP   +DTGMG 
Sbjct: 195 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMGF 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ +VLQ+K++NYD D+F  L  A + +TG + Y G       + I   +RV+ DH+R+
Sbjct: 251 ERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGMFGADDSDGIDTAYRVVADHVRT 310

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  +PE
Sbjct: 311 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFPE 370

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           L + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT G P
Sbjct: 371 LKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGFP 430

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   RGL  ID + F    EE R RA+  S G              +K  AT  
Sbjct: 431 VDLTRLMAEERGL-NIDDLEF----EEARLRAKEASKG--------------QKKSATGT 471

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSGQ 509
           +  D+    K  K     +   P  D +       +++ +KAI           +   G+
Sbjct: 472 VKLDVHDLGKLEK-----MNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGE 526

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++ ++ D+T FYAE GGQ  DTG  I DG   L++ DVQ  A G  +H   ++ G     
Sbjct: 527 QIGIILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYA-GYVLHTGFMKYGSFSIG 585

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T
Sbjct: 586 DAVLCEYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVT 645

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---------- 677
             EL+ IE+   + I QN  V ++ +    A   SG  A+ G  Y D VR          
Sbjct: 646 EKELEKIEEISTEYIRQNCDVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVEVEE 705

Query: 678 -VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            + +VE       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A
Sbjct: 706 ILKNVEDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDA 760


>gi|114663431|ref|XP_001169474.1| PREDICTED: alanyl-tRNA synthetase isoform 1 [Pan troglodytes]
 gi|114663433|ref|XP_001169520.1| PREDICTED: alanyl-tRNA synthetase isoform 2 [Pan troglodytes]
          Length = 968

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 295/801 (36%), Positives = 428/801 (53%), Gaps = 72/801 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++  +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                  RG +   +  K    L         N V++++ A+ ++   VEE  +GQ+  V
Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           V D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L+ 
Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +
Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           ++ ++K  E+  N++I     V T+      A A  G  A+    Y D VRVVS+     
Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704

Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L
Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764

Query: 736 MGQDEKLKSLASFLKVSQGNV 756
                K +S+   L V +  V
Sbjct: 765 ----RKAESMKKCLSVMEAKV 781


>gi|159123802|gb|EDP48921.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 1011

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 288/775 (37%), Positives = 425/775 (54%), Gaps = 80/775 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 66  VRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAKLKSA 125

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + LD
Sbjct: 126 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGLD 185

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY+T +        + D EA  LW + +G+  D I+     DNFW M + GPCGPCS
Sbjct: 186 PQRLYVTYFEGHEEGGLEPDLEAKALW-RAAGVPEDHILPGNMKDNFWEMGDQGPCGPCS 244

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ +++ +    LP   +DTGMG 
Sbjct: 245 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMGF 300

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281
           ER+ +VLQ+K++NYD D+F  L  A + +TG + Y G    +        +RV+ DH+R+
Sbjct: 301 ERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVRT 360

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  +PE
Sbjct: 361 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFPE 420

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           L + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT G P
Sbjct: 421 LKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGFP 480

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   RGL  ID + F    EE R RA+  S G              +K  AT  
Sbjct: 481 VDLTRLMAEERGL-NIDDLEF----EEARLRAKEASKG--------------QKKSATGT 521

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSGQ 509
           +  D+    K  K     +   P  D +       +++ +KAI           +   G+
Sbjct: 522 VKLDVHDLGKLEK-----MNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGE 576

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++ ++ D+T FYAE GGQ  DTG  I DG   L++ DVQ  A G  +H   ++ G     
Sbjct: 577 QIGIILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYA-GYVLHTGFMKYGSFSIG 635

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T
Sbjct: 636 DAVLCEYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVT 695

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---------- 677
             EL+ IE+   + I QN  V ++ +    A   SG  A+ G  Y D VR          
Sbjct: 696 EKELEKIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEE 755

Query: 678 -VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            + +VE       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A
Sbjct: 756 ILKNVEDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDA 810


>gi|112984224|ref|NP_001037452.1| alanyl-tRNA synthetase, cytoplasmic [Bombyx mori]
 gi|135089|sp|P21894|SYAC_BOMMO RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|155955|gb|AAA27821.1| transfer RNA-Ala synthetase [Bombyx mori]
          Length = 967

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 295/829 (35%), Positives = 438/829 (52%), Gaps = 77/829 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
           + IR TF++FF K GH+ + SSS IP +DPTL+F N+GM  FK IF G   P      Y 
Sbjct: 8   NEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQYI 67

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+LLT  F 
Sbjct: 68  RVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTDVFK 127

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T ++ D         E   +W  + G+    I+  +  DNFW M ETGPCGP
Sbjct: 128 LSRERLYVTYFEGDPSSGLEPDLECRNIWLNL-GVPEAHILPGSMKDNFWEMGETGPCGP 186

Query: 172 CSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSE+ +D+ G+     L    +     +EIWNLVF+QF ++      +LP   ID G+GL
Sbjct: 187 CSELHYDRIGDREAAHLVNMDDPD--VLEIWNLVFIQFNRETDGSLKLLPTKHIDCGLGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281
           ER+ +V+Q K  NYD D F  + +A E  TG++ Y G   V+        +RV+ DH R+
Sbjct: 245 ERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGVDDVDGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPEL 340
            +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G  +PE+
Sbjct: 305 LTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLGDVFPEI 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +    I   +  E+ +F KTL RG  LL   +  L   + L GDVA++LYDT+G P+D+
Sbjct: 365 KKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRLYDTYGFPIDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG- 459
            Q ++C      +D+    +  E+ R  ++  S G  +G  + I   +       Q  G 
Sbjct: 425 TQ-LMCEEKGLNVDM----EGYEKSRKESQLVSQGKAAGQEDLIALDV-HAISHLQDTGI 478

Query: 460 --------YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
                   Y+ L  S     D+  L    P       ++ + A+ +  E V E  SGQ+ 
Sbjct: 479 PATDDSPKYNYLPSST----DKDALYTFAP------CTAKIVALRKNKEFVSEISSGQEC 528

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            V+ D+T FYAE GGQ+ D G  +    + +   + +VQ K  G +V HA    GIL+  
Sbjct: 529 GVILDRTSFYAEQGGQIFDEGYMVKIDDETVEFTVKNVQVK--GGYVLHAGKVEGILKVG 586

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +L L ID + RR +  NH+ TH+L++ L  +LG+   Q GS + PD LRFD T+  P+T
Sbjct: 587 DTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPMT 646

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---------- 677
             ++K  E+ + +IIA+N  V     +  +A   +G  A+    Y D VR          
Sbjct: 647 IKQIKDTENEIKEIIAKNKTVYANYTSLSEAKKINGLRAMFDEHYPDPVRVVSVGVPVED 706

Query: 678 -VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARS 733
            + + +   G   S   CGG+H+  T  I    IVSE  I  GIRRI A+TG    +A +
Sbjct: 707 LIKNPDAPTGFETSVEFCGGSHLHRTSHIGEYVIVSEEGIAKGIRRIVAVTGPEAIKAIN 766

Query: 734 HLMGQDEKLKSLASFLK-----VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            L   + ++ ++A+F+K     +S   V  ++ ++  E  + Q+ + K+
Sbjct: 767 KLSVLENEVNNVANFIKEQNESISHKEVSKKIVDLTNEISQAQISYWKK 815


>gi|302923886|ref|XP_003053770.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734711|gb|EEU48057.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 956

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 334/966 (34%), Positives = 490/966 (50%), Gaps = 98/966 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPV--Y 58
            + +R TFLE+F++ GH ++PSSS++P NDPTL+FTN+GM  FK IF    G+  P+   
Sbjct: 10  AARVRQTFLEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTDPMAGL 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +A    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A+Q +W+LLTK +
Sbjct: 70  KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVQYSWELLTKVY 129

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T ++ DE        EA  LW  + G+  D I+     DNFW M + GPCG
Sbjct: 130 GLDPARLYVTYFEGDEKLKLEPDLEAKDLWLSV-GVPEDHILPGNMKDNFWEMGDQGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   + +    +EIWN VFMQ+++Q       LP   IDTG
Sbjct: 189 PCSEIHYDK----IGGRNAANLVNMDDPMVVEIWNNVFMQYDRQKDGSLKSLPAKHIDTG 244

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDH 278
           MG ER+ + LQ   +NY  D F  L +  E+VTG      KY  ++       +RV+ DH
Sbjct: 245 MGYERLVSALQNTVSNYATDCFTPLFKKIEEVTGARPYSDKYGKDDADGIDTAYRVVADH 304

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R+ SF IADG +P N+GRGYV+RR++RR + YAR     +       +LPAL  +MG  
Sbjct: 305 IRTLSFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQ 364

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTH 394
           +PEL++ +  I+E L  E+  F +TLDRG    +   +   KD  + L GDV ++LYDT 
Sbjct: 365 FPELVKKQQDIKEILDEEEVAFARTLDRGEAQFEKYAAQAVKDGSKKLEGDVVWRLYDTF 424

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   R L  ID    +  +E  R +AR  S  +          ++ +    
Sbjct: 425 GFPVDLTRLMAEERSLE-ID----DAEVEAARIKAREASKAVKESVQTFSKLNVHQIAEL 479

Query: 455 TQFIGYDLLR-GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            Q +  +     +KF++ D K   Q     L     + +K+     +I E+   G    +
Sbjct: 480 EQQLKVERTNDDAKFLQGDSKGKVQ-----LIYDGKTFLKST---KDIPEKTALG----L 527

Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D T FYAE+GGQ+ DTG   I D     + DVQ    G  +H   +E G L +   ++
Sbjct: 528 LLDNTNFYAESGGQVADTGRIVIDDVAEFNVLDVQNFG-GYILHSGYIEYGALNSGDEVI 586

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+H+L  +LG  + Q GS +  + LRFD +H   +   EL
Sbjct: 587 CEYDELRRSPIRNNHTGTHILNHSLREVLGDEIHQKGSLVDNEKLRFDFSHKTGVKIEEL 646

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           K IED  N+ I +  P+ ++ ++ + A    G  A+ G  Y + VRVVS+  +       
Sbjct: 647 KKIEDRSNEYIRRGSPIFSKDVDLDLARQIEGCRAVFGETYPNPVRVVSIGKDIDEMLAD 706

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSH 734
               +   +S   CGGTHV  TG I  L ++ ES I  GIRRI A TG      QR  + 
Sbjct: 707 PKNVEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREAAE 766

Query: 735 LMGQDEKLKSLASFLKVSQGNVVG------------------RVEEIW----EEYRKLQL 772
              + + L+ L    K SQ   V                   R ++I      E +K Q 
Sbjct: 767 FAKKLDALEKLDFAEKESQVKAVSVELSQLTISTLTKDELNKRFQKISTAVVAEQKKRQK 826

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             AK  L   ++    ++ A   F+  +    ++K +  V+   Q K +   + L G SK
Sbjct: 827 AEAKTALDTVLKHFKANEDAKW-FVGRLPIGANAKAVGEVVKHFQGKDKEKSVYLFGGSK 885

Query: 833 EKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E+ A V  + V T        A   A   ++V+GG  GG  P   Q  G      D  + 
Sbjct: 886 EEGAVVHGVYVGTHLSSQGVTAEQWAASVSEVIGGRSGGKEP-TRQGQGTKPENLDDGVE 944

Query: 891 GVASFL 896
               +L
Sbjct: 945 TATKWL 950


>gi|310789965|gb|EFQ25498.1| tRNA synthetase class II [Glomerella graminicola M1.001]
          Length = 955

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 337/977 (34%), Positives = 494/977 (50%), Gaps = 121/977 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVY--QAV 61
           +R TFLEFF+K GH ++PSSS++P NDPTL+FTN+GM  FK IF G   +  P+Y  +  
Sbjct: 11  VRKTFLEFFEKRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTISKADPMYPLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD
Sbjct: 71  TDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEWSWELLTKVYGLD 130

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D EA  LW+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 131 PDRLYVTYFEGNPDMGLEPDLEAKGLWQSV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 189

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           E+ +D+     GG   S   +++    +EIWN VF+Q+++Q  +    LP   +DTGMG 
Sbjct: 190 EVHYDK----IGGRNASDLVNQDDPMVVEIWNNVFIQYDRQPDRSLKSLPAKHVDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281
           ER+ + LQ   +NY  D+F  L +  E+VTG      KY  +++      +RVI DH+R 
Sbjct: 246 ERLVSALQNTVSNYATDIFTPLFKRIEEVTGARPYTDKYGADDVDGIDTAYRVIADHIRL 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F ++DG +P N+GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PE
Sbjct: 306 LTFSMSDGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGSFFSKILPALVDQMGEQFPE 365

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
           +++ +  I E L  E+E F +TLDRG    +   +   K  ++ L+G   ++LYDT G P
Sbjct: 366 IVKKQDDIREILDEEEEAFARTLDRGEAQFEKYANAAIKKGEKKLSGAEVWRLYDTFGFP 425

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           +D+ + +   R L  ID      A ++ R  S+   +S+   +         L+++    
Sbjct: 426 VDLTKLMAEERKLE-IDDDEVKAAQDKAREASKVVKNSVQTFAKLNVHQIAELEQQLNVA 484

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +         +KF+K D K   Q     L       VK+     +I E    G    ++ 
Sbjct: 485 R-----TDDDAKFVKGDSKAKVQ-----LIYDGKGFVKST---KDIAENTPLG----LLL 527

Query: 516 DQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE+GGQ+ DTG   I D    ++ DVQ    G  VH+  +E G+L +   ++  
Sbjct: 528 DKTNFYAESGGQVADTGRIVIDDVAEFKVLDVQNHG-GYIVHNGYLEYGVLSSGNEVICE 586

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ATH+L+H+L  +LG  V+Q GS +  + LRFD +H   +T  ELK 
Sbjct: 587 YDELRRSPIRNNHTATHILNHSLREVLGDDVNQKGSLVDNEKLRFDFSHKTGVTIPELKK 646

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY--------------------- 672
           IED  N  I QN  +  + ++ + A    G  A+ G  Y                     
Sbjct: 647 IEDFSNSYIRQNGKIYAKEVDLDLAKGIEGVRAVFGETYPNPVRVVSVGVDVDTLLANPK 706

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           N   R +SVE+          CGGTHV  TG I  L IV ES I  GIRRI A TG  A 
Sbjct: 707 NPEWRKISVEF----------CGGTHVDQTGLIKDLVIVEESGIAKGIRRIIAYTGDAAH 756

Query: 733 SHLMGQDEKLKSLASF------------LKVSQG-------------NVVGRVEEI---- 763
                 DE  K L +             +K +Q              ++  R ++I    
Sbjct: 757 QVQREADEFSKRLDALEVLPFGPEKEQEIKTTQHALNQLTISTLTKEDIKKRFDKIIKAV 816

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +E +K Q   AK  L   V     +K +   F+  +    ++K +  V+   Q K +  
Sbjct: 817 TDEQKKRQKAEAKTALDTVVAHFDKNKDSKW-FVGQLPISANAKAIGEVVKHFQSKDKER 875

Query: 824 IIMLVGISKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            + L G SK +   A  + V T        A   A   ++++GG  GG  P   Q  G  
Sbjct: 876 SVYLFGGSKNEGSVAHGVYVGTHLSSQGVTAEQWAAQVSEIVGGKSGGKEP-TRQGQGTK 934

Query: 882 GNKADQAIAGVASFLKK 898
               D+A+A    +LK+
Sbjct: 935 AENLDEAVATAEKWLKE 951


>gi|155371881|ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|151553989|gb|AAI48084.1| AARS protein [Bos taurus]
 gi|296478238|gb|DAA20353.1| alanyl-tRNA synthetase [Bos taurus]
          Length = 968

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 289/785 (36%), Positives = 420/785 (53%), Gaps = 66/785 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK--EKYGATQFI 458
              I   +GL  +D+  F+    E+R  A+  S G G+G  + I   +   E+       
Sbjct: 425 TALIAEEKGLV-VDMDGFD----EERKLAQLKSQGKGAGGEDLIMLDIYAIEELREKGLE 479

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
             D      +  +       +  +       + V A+ +    VEEA +GQ+  VV D+T
Sbjct: 480 ATDDSPKYSYHSDSSGTYVFESAV-------ATVMALRRDRMFVEEASTGQECGVVLDKT 532

Query: 519 PFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            FYAE GGQ  D G  +       D     + + Q +  G +V H     G L+    + 
Sbjct: 533 CFYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVR--GGYVLHIGTLYGSLKVGDQVR 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++
Sbjct: 591 LFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQI 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYED- 685
           K  E+  N++I    PV T   +   A A  G  A+    Y D VRVVS+     E  D 
Sbjct: 650 KKAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDD 709

Query: 686 -----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   + 
Sbjct: 710 PSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAES 769

Query: 741 KLKSL 745
             KSL
Sbjct: 770 LKKSL 774


>gi|28493343|ref|NP_787504.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|28572546|ref|NP_789326.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|41018202|sp|Q83GD1|SYA_TROWT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41018203|sp|Q83HV0|SYA_TROW8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28410678|emb|CAD67064.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|28476384|gb|AAO44473.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 880

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 312/914 (34%), Positives = 494/914 (54%), Gaps = 78/914 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF K GH++ PS+SLI  NDP++MFT +GM+PF   F   E P +  V +
Sbjct: 3   TSDLRLLFLDFFAKRGHKVSPSASLIS-NDPSVMFTIAGMLPFIQCFLALEPPPHPRVVS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+R     +D+D VG+T RH TFF+M+GNFSFG YFK+ AI+ AW+ L  E DL   
Sbjct: 62  VQKCIRT----SDIDEVGKTPRHGTFFQMMGNFSFGDYFKKEAIEYAWEFLLSELDLAPD 117

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T++ +D+E+ K W  + G+  +++  +  + NFWS  + GP GPCSE+F+D     
Sbjct: 118 RLWVTIHGDDKESEKFWL-LCGVPQERVQSL--DSNFWSTGKAGPAGPCSEVFYDLHG-- 172

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVLQEKTN 242
            G  PG   + +RY+E+WNLVFMQ  + N       LPK  +DTGMGLER+A + Q    
Sbjct: 173 -GPGPGPEGDPDRYLEVWNLVFMQNLRDNDGHIISSLPKKCVDTGMGLERIAMITQGVGT 231

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            YD D  K ++  +  ++G +Y  +  + ++ RV+ DH+RSS  L+ADG+ P+NEGRGY+
Sbjct: 232 IYDTDELKPILDEAGYISGKRYGKDRRDDISLRVLADHIRSSLMLVADGLRPSNEGRGYI 291

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR++  A+LLG  E     L       M   YPEL      I++    E++ F +
Sbjct: 292 LRRLLRRSVRAAKLLGIQENCFDQLFAKAAQVMKVGYPELEGKLAEIKQVACLEEQSFSR 351

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            L+ G  LL    S     + ++GD+AF+L+DTHG P+D++ +I    GL  +D+  F  
Sbjct: 352 ALNAGTQLL--SRSMSSSKKRVSGDLAFRLHDTHGFPIDLITEIAKDSGL-DVDMDGFFT 408

Query: 421 ALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            ++EQ+ R+RA    S  + S TT   +  L+     + F+GY++L+             
Sbjct: 409 LMKEQKDRSRAALSRSKPIVSDTTG--YEGLR-----SNFLGYEMLQ------------- 448

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                     V + + A+V+ G I+  A  G  V++  +QTPFYA AGGQ  D G    D
Sbjct: 449 ----------VDTKITALVKDGTILTSAKQGDCVDIALEQTPFYATAGGQEADRGFIESD 498

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++  V     G+ VH   +  G++ +   +  ++D  NR     +H+ATH++H  +
Sbjct: 499 NFSGKVVTVFSPLPGLTVHRCEIVSGLVVSGEVVRASVDSANRFAACQSHTATHVIHAVV 558

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             + GS   Q GS      LRFD + S   T ++   +E+  N  I   L + +     E
Sbjct: 559 REMFGSTSVQMGSYNRAGYLRFDFSCSYAPTDSQRIELEERANRAIQSCLEISSTYTTLE 618

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+ASGA AL G +Y D VR+V +    GG  S  LC GTH+ ++ EI ++ +VSE+S+ 
Sbjct: 619 KAVASGAIALFGERYGDTVRMVEI----GGPWSRELCAGTHLRNSSEIAVVSLVSETSVA 674

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--------- 768
           +GIRR+E +TG  A SH   +   + ++   L  ++  + G ++++ E  +         
Sbjct: 675 SGIRRVECLTGFDAFSHFAQERALVDTVMRTLGATRQEMEGAIDDLRENLKRSKHALQTA 734

Query: 769 --KLQLIHAKRKLQLNVEDLSCHK--IADVN-FMSHII---SEVDSKELKSVMDALQKKI 820
             K     A R LQ   + +S  +  IAD++ F+S  +    E  ++++++V    +K +
Sbjct: 735 KDKFLSAFAPRLLQ-EFKSVSSVRILIADLSKFLSGPLFSPFEFTAEDIRAVTLRCKKLL 793

Query: 821 QSGIIMLVG--ISKEKKASVLIVVTE---DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +   ++L+   IS    A+  I ++      +D  +A +L ++  K L  G GGGR   A
Sbjct: 794 EEPHVLLLAAVISGRVHAACSIDLSSVKLSCMDDLSANNLIKVFLKTL-DGSGGGRADFA 852

Query: 876 QSGGPNGNKADQAI 889
           Q  G N    D A+
Sbjct: 853 QGAGWNAKLLDSAL 866


>gi|114663435|ref|XP_511075.2| PREDICTED: alanyl-tRNA synthetase isoform 3 [Pan troglodytes]
          Length = 894

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 295/801 (36%), Positives = 428/801 (53%), Gaps = 72/801 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++  +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                  RG +   +  K    L         N V++++ A+ ++   VEE  +GQ+  V
Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           V D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L+ 
Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +
Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           ++ ++K  E+  N++I     V T+      A A  G  A+    Y D VRVVS+     
Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704

Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L
Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764

Query: 736 MGQDEKLKSLASFLKVSQGNV 756
                K +S+   L V +  V
Sbjct: 765 ----RKAESMKKCLSVMEAKV 781


>gi|74196486|dbj|BAE34378.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 292/795 (36%), Positives = 424/795 (53%), Gaps = 80/795 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T    DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYLGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ +++      LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +            
Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511
           + LR       D       P  +  +  S         + V A+ ++   V+E V+GQ+ 
Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T   
Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681
            +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+   
Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702

Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+ 
Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762

Query: 734 HLMGQDEKLKSLASF 748
            L   +   KSL++ 
Sbjct: 763 ALRKSETLKKSLSAM 777


>gi|70983336|ref|XP_747195.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66844821|gb|EAL85157.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
          Length = 1011

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 286/770 (37%), Positives = 422/770 (54%), Gaps = 70/770 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 66  VRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAKLKSA 125

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + LD
Sbjct: 126 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGLD 185

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY+T +        + D EA  LW + +G+  D I+     DNFW M + GPCGPCS
Sbjct: 186 PQRLYVTYFEGHEEGGLEPDLEAKALW-RAAGVPEDHILPGNMKDNFWEMGDQGPCGPCS 244

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ +++ +    LP   +DTGMG 
Sbjct: 245 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMGF 300

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281
           ER+ +VLQ+K++NYD D+F  L  A + +TG + Y G    +        +RV+ DH+R+
Sbjct: 301 ERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVRT 360

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  +PE
Sbjct: 361 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFPE 420

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           L + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT G P
Sbjct: 421 LKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGFP 480

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   RGL  ID + F    EE R RA+  S G              +K  AT  
Sbjct: 481 VDLTRLMAEERGL-NIDDLEF----EEARLRAKEASKG--------------QKKSATGT 521

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVV 514
           +  D+    K  K +               +++ +KAI           +   G+++ ++
Sbjct: 522 VKLDVHDLGKLEKMNVVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGII 581

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ  DTG  I DG   L++ DVQ  A G  +H   ++ G      +++ 
Sbjct: 582 LDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYA-GYVLHTGFMKYGSFSIGDAVLC 640

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  EL+
Sbjct: 641 EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 700

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSV 681
            IE+   + I QN  V ++ +    A   SG  A+ G  Y D VR           + +V
Sbjct: 701 KIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 760

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           E       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A
Sbjct: 761 EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDA 810


>gi|50286987|ref|XP_445923.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525229|emb|CAG58842.1| unnamed protein product [Candida glabrata]
          Length = 956

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 279/769 (36%), Positives = 408/769 (53%), Gaps = 68/769 (8%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT--- 62
           ++R TF+++F++  H+ + SS ++P +DPTL+FTN+GM  +K IF G   P     T   
Sbjct: 13  NVRKTFMDYFEEKNHKYVKSSPVVPFDDPTLLFTNAGMNQYKPIFLGTVDPSSDFYTLKR 72

Query: 63  --TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  AW LLT+ + +
Sbjct: 73  AYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIDYAWKLLTEVYGI 132

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +        + D EA  LWKK+ G+  D I+     DNFW M + GPCGPC
Sbjct: 133 PADRLYVTYFEGDAKQGLEPDTEALDLWKKV-GVPEDHILPGNAKDNFWEMGDQGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG   +S   ++    +E+WNLVFMQF ++       LP   IDTGMG
Sbjct: 192 SEIHYDR----IGGRNAASLVNQDDPDVLEVWNLVFMQFNREQDGSLKSLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L    +++TG + Y G       +NI   +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFMPLFARIQEITGARPYAGKFGDEDKDNIDTTYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYP 338
           +  F +ADG +P NEGRGYVLRRI+RR   +AR  + Y        L P L  ++   +P
Sbjct: 308 TLVFALADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGNFFSSLAPTLIDQVKHIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  + +   +   + E   L+G   ++LYDT+G 
Sbjct: 368 EVAKDPSFLFEILDEEESSFSKTLDRGERIFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   + L  ID   F +A +E    ++      G    +    S+ E      
Sbjct: 428 PVDLTELMAEEQNLK-IDGPGFEKAKQESYEASKRGGQKGGDDLIKLNVHSIAE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                 L      K D         ++       I+K    +  + E +  G+K  ++ D
Sbjct: 481 ------LNSENVPKTDDSFKYGNENVE-----GKILKLHDGEKFVTEISEPGKKYGIILD 529

Query: 517 QTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  DTG   I D     + +VQ    G   H   +  G L  +  ++ + 
Sbjct: 530 KTCFYAEQGGQEYDTGKIVIDDKAEFSVENVQ-LYNGFVFHTGTLSEGKLSVDDVIIASY 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L++AL   LG+ + Q GS + P+ LRFD +H K +T  E+  +
Sbjct: 589 DELRRFPIKNNHTGTHILNYALKETLGNDIDQKGSLVAPEKLRFDFSHKKALTIEEVTKV 648

Query: 636 EDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV-----------E 682
           E+  N+ I  N  V  +   ++   +I S   A+ G  Y D VRVVSV            
Sbjct: 649 ENICNEQIKNNYNVYYKDVPLDLAKSIYS-VRAVFGETYPDPVRVVSVGKPVDDLLANPS 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            E+ G +S   CGGTHV +TG+I    I+ ES I  GIRRI A+TG  A
Sbjct: 708 NEEWGKYSIEFCGGTHVKTTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756


>gi|212541448|ref|XP_002150879.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210068178|gb|EEA22270.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 1000

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 286/781 (36%), Positives = 419/781 (53%), Gaps = 92/781 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  F+++F++ GH  +PSSS++P +DPTL+F N+GM  +K+IF G   P      + +A
Sbjct: 55  VRNEFIDYFKERGHTFVPSSSVVPVSDPTLLFANAGMNQYKSIFLGTVDPQSDFAHLKRA 114

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V + QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK  AI  +W+LLTK F L
Sbjct: 115 VNS-QKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKNEAITYSWELLTKVFGL 173

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  RLY+T ++ D         EA  +W+K+ G+  D I+     DNFW M + GPCGPC
Sbjct: 174 DPSRLYVTYFEGDAQGGLEPDLEAKDIWRKV-GVPEDHILPGNMKDNFWEMGDQGPCGPC 232

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SE+ +D+     GG   +S   ++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 233 SEVHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 288

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L +  +++TG + Y+G             +RV+ DH+R
Sbjct: 289 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAREYQGRFGAEDADGVDTAYRVVADHVR 348

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 349 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVNQMGGMFP 408

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG    +          +  L+G   ++LYDT G 
Sbjct: 409 EIKEKQDEVMEALNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 468

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID   F    EE R +A+  S G      E +   + +      
Sbjct: 469 PVDLTQIMAEERGLS-IDEAEF----EEARLKAKEASKGQKKAAAETVKLDVHD------ 517

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
            +G  L    +  K D       P I+      S+VKAI      ++   +   G+++ V
Sbjct: 518 -LG-KLDNMHEVPKTDDSSKFDSPKIE------SVVKAIYYSKSFIQTTADVPEGEQIGV 569

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG    +G   L++ DVQ    G  +H   ++ G L    S+ 
Sbjct: 570 ILDRTNFYAEQGGQENDTGAIYINGKAELEVGDVQSYG-GYVLHTGFIKYGSLAVGDSVT 628

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D + R+ +  NH+ TH+L+ AL  +LG  ++Q GS +  + LRFD +H   ++  EL
Sbjct: 629 CEFDDRRRQPIRNNHTGTHILNFALREVLGDGINQKGSLVAAEKLRFDFSHKAGVSDKEL 688

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND----------------- 674
             IE    + I QN  V ++ +    A   SG  A+ G  Y D                 
Sbjct: 689 DQIERKSTEYIRQNCGVYSKEVPLATAREISGVRAVFGETYPDPVRVVSVGVEVEEILKD 748

Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
               R   +S+E+          CGGTHVS +GEI  L I+ ES I  GIRRI A+TG  
Sbjct: 749 VKDPRWNDISIEF----------CGGTHVSKSGEIRELVILEESGIAKGIRRIIAVTGDE 798

Query: 731 A 731
           A
Sbjct: 799 A 799


>gi|115432192|gb|ABI97370.1| AlaRS [Bos taurus]
          Length = 869

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 289/785 (36%), Positives = 420/785 (53%), Gaps = 66/785 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +        
Sbjct: 10  IRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF + 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPCGPCS
Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPCGPCS 188

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDTGMGL
Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+
Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHART 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL
Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+
Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK--EKYGATQFI 458
              I   +GL  +D+  F+    E+R  A+  S G G+G  + I   +   E+       
Sbjct: 425 TALIAEEKGLV-VDMDGFD----EERKLAQLKSQGKGAGGEDLIMLDIYAIEELREKGLE 479

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
             D      +  +       +  +       + V A+ +    VEEA +GQ+  VV D+T
Sbjct: 480 ATDDSPKYSYHSDSSGTYVFESAV-------ATVMALRRDRMFVEEASTGQECGVVLDKT 532

Query: 519 PFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            FYAE GGQ  D G  +       D     + + Q +  G +V H     G L+    + 
Sbjct: 533 CFYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVR--GGYVLHIGTLYGSLKVGDQVR 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++
Sbjct: 591 LFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQI 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYED- 685
           K  E+  N++I    PV T   +   A A  G  A+    Y D VRVVS+     E  D 
Sbjct: 650 KKAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDD 709

Query: 686 -----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   + 
Sbjct: 710 PSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAES 769

Query: 741 KLKSL 745
             KSL
Sbjct: 770 LKKSL 774


>gi|221116701|ref|XP_002160302.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 998

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 289/796 (36%), Positives = 431/796 (54%), Gaps = 73/796 (9%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           +R  F++FF +K  H  +PSSS IP  DPTL+F N+GM  FK++F G   P       + 
Sbjct: 47  VRQDFIDFFVKKYDHIFVPSSSTIPHEDPTLLFANAGMNQFKSLFLGTADPNSDFAKLKR 106

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG +FK+  I  +W+LLT  + L
Sbjct: 107 VVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDFFKKEIIAWSWELLTDVWGL 166

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           ++ R Y+T +        DEEA + W ++ GL  + ++     +NFW M ETGPCGPCSE
Sbjct: 167 EKERFYVTYFGGADGVPADEEAKQFWLEL-GLPPNHVLPFGMKENFWEMGETGPCGPCSE 225

Query: 175 IFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           + +D+     GG   S   + +    +E+WNLVF+QF ++   +   LP   +DTG+GLE
Sbjct: 226 LHYDR----IGGRDASNLVNMDVPDVLEVWNLVFIQFNREVDGQLVPLPNQHVDTGLGLE 281

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----------YEGNNIVNHRVIVDHLRS 281
           R+ +VLQ K +NYD D+F     A  Q TG+K           +G ++  +RVI DH+R+
Sbjct: 282 RIISVLQNKMSNYDTDVFTPYFDAIHQATGIKPYLGLVGPDDKDGVDMA-YRVIADHIRT 340

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPEL 340
            +  ++DG  P N GRGYVLRRI+RRA+ +A      +P +   L+  +CT +GS YP +
Sbjct: 341 LTVALSDGGRPDNVGRGYVLRRILRRAVRFATEKLNCKPGVFASLVDVVCTSLGSVYPNI 400

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
           ++    I++ +  E+ +F KTL RG  L +        D I+ GD+A++LYDT+G P D+
Sbjct: 401 LKDPQTIKDIINEEESQFLKTLARGRRLFNRTADKT-TDGIIAGDLAWRLYDTYGFPSDL 459

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              +   R L  +D++ +      +  +A+A  +    G+  +  +SL            
Sbjct: 460 TILMAEERNLK-VDMVGY------EVLKAKAQEMARARGSEVEDIYSLDVH-------AI 505

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTN-GVSSIVKAIVQ----QGEIVEEAVSGQKVEVVF 515
           D L+   F++ D          +  N G  S+ K IV       + V+E  +G K  V+ 
Sbjct: 506 DELKTKGFVQTDESPKYNYEKDEHGNYGNFSLCKTIVTALRVNKQFVDEVTNG-KCGVLL 564

Query: 516 DQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQL DTG   +G+ +   + DVQ    G +V H     G L+    +  +
Sbjct: 565 DRTSFYAEQGGQLFDTGYINLGEEVEFAVNDVQ--IHGGYVLHVGNLVGTLKVGDKVTCS 622

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID   RR L  NH+ATHLL+ AL  +L     Q GS + PD LRFD T    ++S ++K 
Sbjct: 623 IDESRRRSLMNNHTATHLLNFALRKVLVDDADQRGSLVAPDKLRFDFTAKGALSSEQVKM 682

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSVEYE------- 684
            ED   +II Q+  V     +   A+A    G  A+    Y D VRV+S+ Y+       
Sbjct: 683 TEDITREIIKQDQKVFASASSL--AVAKNIQGLRAIFDEVYPDPVRVISIGYDLKDLIND 740

Query: 685 -DGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD-- 739
              G  +S   CGGTH+ STG+++   IVSE +I  GIRRI ++TG  A ++H       
Sbjct: 741 PQAGYKTSVEFCGGTHLKSTGDVVEFAIVSEEAISKGIRRIVSLTGSDALKAHKRANQLA 800

Query: 740 EKLKSLASFLKVSQGN 755
             L   + +++V + N
Sbjct: 801 STLNEFSEYVEVQKNN 816


>gi|158298580|ref|XP_318757.4| AGAP009701-PA [Anopheles gambiae str. PEST]
 gi|157013952|gb|EAA14564.4| AGAP009701-PA [Anopheles gambiae str. PEST]
          Length = 946

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 321/971 (33%), Positives = 497/971 (51%), Gaps = 130/971 (13%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
           S IR+ FL+FF++  H  + SSS+IP +DPTL+F N+GM  FK IF G   P      + 
Sbjct: 8   SQIRSIFLDFFKEKEHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPNSDMAKWV 67

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   
Sbjct: 68  RTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLK 127

Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPCGP
Sbjct: 128 LPKERLYVTYFGGHPESGLEPDLECREIWLKL-GVKEEHILPGSMKDNFWEMGETGPCGP 186

Query: 172 CSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           CSE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LPK  ID GMG
Sbjct: 187 CSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREQDSSLKLLPKKHIDCGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVN--------HRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L  A ++ TG   Y+G    +        +RV+ DH R
Sbjct: 244 FERLVSVIQDKRSNYDTDVFMPLFDAIQKGTGAAAYQGRVGADDSDGVDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G  +PE
Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVQLLGETFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 364 VRKDPQHIKNVINEEEQQFLKTLTRGRNLLNRTIAKLGNSKVIPGDVAWRLYDTYGFPID 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQ------RSRARAHSLGLG-SGTTEKIWFSLKEKY 452
           +   ++       ID+  + +A  E       + +++  ++ L   G +E     L+E+ 
Sbjct: 424 LTL-LMAEEKQMTIDMEGYEKAKHESYIISQGKEKSKTATIDLDVHGISE-----LQER- 476

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
              +    D     ++  E    L Q     +    +  + A+      VEE  +GQ+  
Sbjct: 477 ---KVPATDDSFKYRYKAESIDPLAQY----VFEPCTGKIVALRFNNAFVEEVQAGQECG 529

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H  +VE G LR   
Sbjct: 530 VILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHIGVVE-GTLRVGD 587

Query: 570 SLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T
Sbjct: 588 EVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAMT 646

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVS----V 681
             ++   E    +++ +N+ V  +  N   A+A    G  ++    Y D VRV+S    V
Sbjct: 647 IEQVAEAERLTREVVKRNVQVYAKEANL--AVAKTIRGLRSVFDEVYPDPVRVISFGVPV 704

Query: 682 EY-------EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           E        E G ++S   CGGTH+  +G ++   I +E +I  GIRRI A+TG  A   
Sbjct: 705 EQLEADPTGEAGVINSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEALKA 764

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L   +   + L+       G+  GR      E ++    H K+ ++L  +D+S       
Sbjct: 765 LKKTELLEQELSKLRATIDGDKEGR------EAKE----HVKKIIEL-TDDVS------- 806

Query: 795 NFMSHIISEVDSKELKSVMDALQK-----------KIQSGIIMLVG-ISKEKKASVLIVV 842
                 I  V   EL++V+  L+K            + SG++     +S+  K +  +V 
Sbjct: 807 ---QATIPYVKKDELRTVLKGLKKALDDKERVARAAVASGVVEKAKELSQAHKDAPFLVQ 863

Query: 843 TEDLLDRFNAVDLA---------RLSAKVLG---------------GGGGGGRPHMAQSG 878
             + L+   A+D A           SA  L                GG GGG+P  AQ+ 
Sbjct: 864 RLEALNNTKALDSALKEVRKVNPEQSALFLSGLKANEWISHIAPVMGGKGGGKPESAQAS 923

Query: 879 GPNGNKADQAI 889
           G N +KAD+ +
Sbjct: 924 GGNFDKADEIL 934


>gi|301102849|ref|XP_002900511.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262101774|gb|EEY59826.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 980

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/771 (34%), Positives = 410/771 (53%), Gaps = 69/771 (8%)

Query: 5   SSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + IR TF E+FQ      H    S  ++P +DPTL+F N+GM  +K IF GQ  P +   
Sbjct: 29  ARIRKTFFEYFQNQKELPHTFYKSCPVVPLDDPTLLFINAGMNQYKPIFLGQVDPSHPMA 88

Query: 62  TTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             V     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ A+ L++ LLT+
Sbjct: 89  KLVRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGNYFKKEAVHLSFTLLTE 148

Query: 117 EFDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            F +D+ RLY T +  DE      DEE  ++W  ++ L  ++++     DNFW M + GP
Sbjct: 149 VFGIDKDRLYATYFGGDEKQGLPSDEETREIW--LNYLPTERVLPFGCKDNFWEMGDVGP 206

Query: 169 CGPCSEIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           CGPC+EI +D+       E +    P         IEIWN VF+QF ++   +   LP  
Sbjct: 207 CGPCTEIHYDRIGNRDASELVNADRPD-------VIEIWNNVFIQFNREQDGKLVPLPHK 259

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG--------NNIVNHR 273
            +DTGMG ER+A++LQ K +NYD D+F  L  A ++ T    Y G           + +R
Sbjct: 260 HVDTGMGFERLASILQGKDSNYDTDVFTPLFAAIQKSTKAAPYTGKLGEEDPDKKDMAYR 319

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH+R+ +F I DG +P+N+GRGYVLRRI+RRA+ Y  + L      +  L+P +   
Sbjct: 320 VVADHVRTLTFAITDGAVPSNDGRGYVLRRILRRAVRYGQQFLNAPSGFLTELVPVVVNM 379

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKL 390
           +G A+PEL+Q +  +EE +  E++ FG+TL++G+     +   + +    ++ G+ AF L
Sbjct: 380 LGEAFPELVQKQKEVEEIILDEEKSFGRTLNKGIERFKKIAQGIREANKLVVPGEDAFFL 439

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           YD+ G P+D+ + +    G+  +DI  + + +  Q  R++      GS     +    +E
Sbjct: 440 YDSMGFPIDLTEIMAEEEGMT-VDIKGYEECMRLQSERSKMDRKKGGSNGARPLVLEARE 498

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-- 508
               +   G  +       K +  V         +  V +I        + V+E  +G  
Sbjct: 499 ---TSTLAGKHISATDDMAKYEWNV-------KTSAKVVAIFTTTESSSDFVDEVKAGDF 548

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++V V+ D+T FY++AGGQ+ DTG      ++L +  V+  A G  +H   +  G ++  
Sbjct: 549 ERVGVILDKTSFYSQAGGQIYDTGVLTASNLKLDVDSVESYA-GYVMHMGSIATGSIKVG 607

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            S+   +DY  R +++ NH+ TH L+ AL  +LG+ V Q GS +    LRFD T++K + 
Sbjct: 608 DSVACEVDYARRAKIAPNHTMTHALNFALRKVLGTVVDQRGSLVDESRLRFDFTNNKALK 667

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------ 681
            A+L  +E   +D+I Q L V T+   + +A    G  A+ G  Y D VRVVS+      
Sbjct: 668 PAQLAEVEAICDDLIKQQLEVYTQNSAQAEAKRIQGLRAVFGETYPDFVRVVSIGQPIAP 727

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                E       S   CGGTH+ +T E     +  E +I  GIRR+ A T
Sbjct: 728 MLEDPEKSKWSNFSVEFCGGTHLKNTKEAKRFVLYEEGAIAKGIRRVSAYT 778


>gi|194863135|ref|XP_001970293.1| GG23450 [Drosophila erecta]
 gi|190662160|gb|EDV59352.1| GG23450 [Drosophila erecta]
          Length = 966

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 319/968 (32%), Positives = 483/968 (49%), Gaps = 95/968 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LTK   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTKRLALP 128

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGPDDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K   + +  +       GV +S + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  IVE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGIVE-GTLKVGDELELHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E  
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTDQKGSLVVPEKLRFDFNSKAAMTIEQVAKTEQL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684
             +++ +N+P+  +    + A+A    G  ++    Y D VRV+S            + E
Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDDLEQNPDSE 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   + 
Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773

Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777
           +         +  G+     V+EI E                E R L       L   +R
Sbjct: 774 IVRLKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829
            L+  V      +   + + N  + ++ E      ++K L + +  ++ ++     M + 
Sbjct: 834 ALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLS 893

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+
Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEKVDE 952

Query: 888 AIAGVASF 895
            +   + F
Sbjct: 953 IVQLASKF 960


>gi|330794423|ref|XP_003285278.1| alanyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325084730|gb|EGC38151.1| alanyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 944

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 324/985 (32%), Positives = 495/985 (50%), Gaps = 132/985 (13%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +V+ IR TF+EFF  K  H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P     
Sbjct: 2   DVNQIRKTFIEFFVNKAEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQA 61

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            + +AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 62  KLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAISWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW  +  L  ++++     +NFW M + G
Sbjct: 121 EVYGLDKERLYVTYFRGDPEKGLEPDNEAKNLW--LQYLPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           PCGPCSEI +D+   +PG  G P  + +    IEIWNLVF+QF ++  +    LP   +D
Sbjct: 179 PCGPCSEIHYDK---VPGRNGAPFVNADDPTLIEIWNLVFIQFNREADKSLRPLPNKHVD 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVN--HRVI 275
           TGMGLER+ +++Q+   NYD D+FK + +A ++VTG           E +  V+  +RVI
Sbjct: 236 TGMGLERLTSIIQKVPTNYDTDVFKPIFEAIQEVTGYPEPYGGKVGAEDSQQVDMAYRVI 295

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMG 334
            DH+R+ SF IADG  P+ +GRG VLRRI+RRA+ Y +  L         L+  +    G
Sbjct: 296 ADHIRTLSFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVVQNFG 355

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
             YPEL +    I   L  E++ F KTL++G+   + ++     D +L+   A+ L    
Sbjct: 356 EFYPELRKKPEHIRMVLTREEDMFNKTLEKGIQEFEKMIKKT-TDGVLSAPNAYFLSTVC 414

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQ----RSRARAHSLGLGSGTTEKIWFSLKE 450
           G P+D+   +   +GL  +DI  F +  E Q    R R +     L  G     W     
Sbjct: 415 GFPIDLTTIMAEEKGLK-VDIQGFEKLCEAQSEIDRKRQKEKKTELTLGAEANAW----- 468

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
                       L+ +     D     Q+  +  T      VKAI    E V+    GQ 
Sbjct: 469 ------------LKNNNIKITDDSFKYQQKEVQTT------VKAIWNGKEFVDTVPKGQL 510

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVH--HAI 559
             +V + T FY E GGQ+ D G       +L   D QK A          G  +H  +  
Sbjct: 511 CGIVLESTNFYPEQGGQIYDVG-------QLSFVDDQKTAFDVKDCKVFGGYVLHIGYLS 563

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E   L+    +  T+DY  R  +  NH++TH++++AL ++LG  + Q GS +     RF
Sbjct: 564 YECTELKVGDKVESTVDYTRRSPIMSNHTSTHMVNYALKSVLGEGIEQRGSFVDASRFRF 623

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR- 677
           D +  + +T  EL  I+  VND+I + L V  + +    A   +G  A+ G  Y D VR 
Sbjct: 624 DFSFGRAVTKDELAKIDQIVNDLIFKQLNVYAQEVPLAKAKTINGLRAVFGEVYPDPVRV 683

Query: 678 ----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                     + +    +   +S   CGGTH+++T +  L  I+SE ++ AG+RRI A+T
Sbjct: 684 VSVGVPVDQLIENPTNAEWANYSIEFCGGTHLTNTKQAELFTIISEETLGAGVRRIVAVT 743

Query: 728 GQRAR-SHLMGQDEKL--------------KSLASFLKVSQGNVVGRV--EEIWEEYRKL 770
           G  A  +H + ++ +L              K + + L+  + + + +     + E  ++L
Sbjct: 744 GSEATAAHELNKELELRFNKALKLTGSELSKEIVALLETLKSSCISQAVRYNLVEAMKEL 803

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ------------K 818
           Q I  +R L   VE+L   + + +     II E+ SK  +  +D +             K
Sbjct: 804 QSI--QRVLAKEVENLQILESSKIT--ERIIQELTSKPSELYVDLVNLGSNTTVITDTIK 859

Query: 819 KIQSG----IIMLVGISKEK-KASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872
           KIQ+      +ML+   +EK K + + +V +D  + +  A ++       + GG GGG+ 
Sbjct: 860 KIQAKSNQTAVMLISPDEEKGKVTCIGIVPKDSPISKSVAANVWVSKVTEVLGGKGGGKA 919

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            +AQ  G   +K D+AI     F K
Sbjct: 920 EVAQGVGSKLDKIDEAILVARDFAK 944


>gi|194386694|dbj|BAG61157.1| unnamed protein product [Homo sapiens]
          Length = 992

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 295/808 (36%), Positives = 428/808 (52%), Gaps = 78/808 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISG-------LSADKIIRITTNDNFWS 162
           F +   RLY+T +  DE        E  ++W+ +         L   KI+     DNFW 
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGTYLYSFVRLDDTKILPGNMKDNFWE 185

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFIL 219
           M +TGPCGPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       L
Sbjct: 186 MGDTGPCGPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPL 241

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------V 270
           PK SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         +
Sbjct: 242 PKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDM 301

Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM-CYARLLGYTEPLMMHLLPAL 329
            +RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ C    L  +      L+  +
Sbjct: 302 AYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRCAHEKLNASRGFFATLVDVV 361

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389
              +G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ 
Sbjct: 362 VQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWL 421

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT+G P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   + 
Sbjct: 422 LYDTYGFPVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI- 475

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
             Y   +       RG +   +  K    L         N V++++ A+ ++   VEE  
Sbjct: 476 --YAIEELRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVS 528

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIV 560
           +GQ+  VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H   
Sbjct: 529 TGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGT 586

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD
Sbjct: 587 IYGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFD 645

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
            T    +++ ++K  E+  N++I     V T+      A A  G  A+    Y D VRVV
Sbjct: 646 FTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVV 705

Query: 680 SV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+     E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG
Sbjct: 706 SIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTG 765

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV 756
             A+  L     K +SL   L V +  V
Sbjct: 766 AEAQKTL----RKAESLKKCLSVMEAKV 789


>gi|322379407|ref|ZP_08053777.1| alanyl-tRNA synthetase [Helicobacter suis HS1]
 gi|321148116|gb|EFX42646.1| alanyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 862

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 294/758 (38%), Positives = 419/758 (55%), Gaps = 77/758 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I+  FLE+F+   H L+PSSSL+P  D +L+FTN+GMV FK+IF G+ KP     T+ Q 
Sbjct: 3   IKKAFLEYFKNLNHLLVPSSSLVP-QDASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQL 61

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A++ + +  + D + +Y
Sbjct: 62  CMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDIY 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I+V+++D+EA+KLW+K   +S   I  +   DNFW MA+ GPCG CSEI+ DQGE     
Sbjct: 122 ISVHEKDQEAYKLWQKFVPIS--HIKTMGDADNFWQMADVGPCGYCSEIYIDQGE----K 175

Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              SSE     EG+R++EIWNLVFMQ+E+ +      L +  IDTGMGLER+  +L+   
Sbjct: 176 YFHSSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQ 235

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF+ LI   E+V  + Y  +++ + RV+ DH RS  FL+A G+   N GRGYVL
Sbjct: 236 NNFDSSLFRPLISRIEEVFDLNYT-DHLESFRVLADHARSVGFLLAMGVYFENTGRGYVL 294

Query: 302 RRIMRRAMCYARLLGYT------EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           RRI+RRA+ +  LL         EP    +L  LC  M   YP L + K  IE   ++E+
Sbjct: 295 RRILRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLMPD-YPLLAEHKESIEAECKAEE 353

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TLD+G+ L +  L         +G VAFKLYDT+G PLD+  D+L  + +  +++
Sbjct: 354 ELFLATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLRHKNIT-VNL 411

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   ++EQ+ R++                  K+ +    F   DL   S  +      
Sbjct: 412 EEYQACMQEQQQRSQ-----------------FKQSHAKEGFKNLDL---SALV------ 445

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
               P + +     S+   I+     +EEA    +  +V D+TPFYA+ GG +GD G  +
Sbjct: 446 ----PNVFVGYECESVQAKIL--ALYLEEA---NRAFLVLDKTPFYAQGGGPIGDRGVIL 496

Query: 536 GDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                L  Q+ D QK  E       +VE   L    S++  + +  R +++ +HSATHLL
Sbjct: 497 DTNHVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEVSH--RLEIAKHHSATHLL 554

Query: 594 HHALSTILGS---------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           H AL  ILG           + Q GS I P  LRFD +  + +   E++ IE  VN  IA
Sbjct: 555 HLALREILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIA 614

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +P     M    A  SGA  L   KY ++VRVV +    G V +   CGG HV ++ +
Sbjct: 615 LAMPTSVENMQALQAKESGAIMLFEDKYLEQVRVVKIA---GSVEA---CGGVHVQNSAQ 668

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
           I    I+  SS+ AG+RRIEA+ G+ A    + Q+ ++
Sbjct: 669 IGGFAIIKVSSVSAGVRRIEAVCGE-AYYDFIAQERRI 705


>gi|195397897|ref|XP_002057564.1| GJ18196 [Drosophila virilis]
 gi|194141218|gb|EDW57637.1| GJ18196 [Drosophila virilis]
          Length = 967

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 314/962 (32%), Positives = 483/962 (50%), Gaps = 94/962 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R T+L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRDTYLNFFKEKQHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMAKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT   +L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEFLTVRLNLP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDVASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   +++    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +        +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400
           +    I + +  E+ +F KTL RG  LL+  +  LG ++  + GDVA++LYDT+G P+D+
Sbjct: 365 KDPQQIMDIINEEELQFLKTLTRGRNLLNRTIEKLGANQTTIPGDVAWRLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   + L  ID+  ++ A    +  +   S G G+   E+I   +       Q  G 
Sbjct: 425 TQLMAEEKSLQ-IDMAGYDAA----KQNSYILSQGKGASKIEEINLDV-HAISQLQEQGV 478

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                S   K +     +    + +   S IV A+  + + V+E  SGQK  +V D+T F
Sbjct: 479 PPTNDSFKYKYEAVSNERDSAYNYSECTSKIV-ALRYENKFVQEISSGQKAGIVLDKTNF 537

Query: 521 YAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     + L ID +
Sbjct: 538 YAESGGQIYDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDEVQLHIDAE 596

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E  
Sbjct: 597 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVAKTEQL 656

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684
             D++ +N+P+  +    + A+A    G  ++    Y D VRV+S            + E
Sbjct: 657 TRDMVYKNMPIYAK--ESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLEAQPDAE 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   L   +   + 
Sbjct: 715 AGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFQQE 774

Query: 745 LASFLKVSQGNVVGRVEEIW---------------------EEYRKL------QLIHAKR 777
           ++      + +  G+  +++                     +E R L       L   +R
Sbjct: 775 ISKLQATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDDKER 834

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829
            L+  V      +   + + N  ++++ +      ++K L + +  ++ ++     M V 
Sbjct: 835 ALRAAVSVTVVERAKALCEANPQANVLVQQLEAYNNTKALDAALKQVRSQLPDAAAMFVS 894

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  + VL GG GGG+P  AQ+ G N  + D+
Sbjct: 895 VDADSKKIFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFERVDE 953

Query: 888 AI 889
            +
Sbjct: 954 IV 955


>gi|322380891|ref|ZP_08054970.1| alanyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321146695|gb|EFX41516.1| alanyl-tRNA synthetase [Helicobacter suis HS5]
          Length = 862

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 294/758 (38%), Positives = 419/758 (55%), Gaps = 77/758 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I+  FLE+F+   H L+PSSSL+P  D +L+FTN+GMV FK+IF G+ KP     T+ Q 
Sbjct: 3   IKKAFLEYFKNLNHLLVPSSSLVP-QDASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQL 61

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A++ + +  + D + +Y
Sbjct: 62  CMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDIY 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           I+V+++D+EA+KLW+K   +S   I  +   DNFW MA+ GPCG CSEI+ DQGE     
Sbjct: 122 ISVHEKDQEAYKLWQKFVPIS--HIKTMGDADNFWQMADVGPCGYCSEIYIDQGE----K 175

Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              SSE     EG+R++EIWNLVFMQ+E+ +      L +  IDTGMGLER+  +L+   
Sbjct: 176 YFHSSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQ 235

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF+ LI   E+V  + Y  +++ + RV+ DH RS  FL+A G+   N GRGYVL
Sbjct: 236 NNFDSSLFRPLISRIEEVFDLNYT-DHLESFRVLADHARSVGFLLAMGVYFENTGRGYVL 294

Query: 302 RRIMRRAMCYARLLGYT------EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           RRI+RRA+ +  LL         EP    +L  LC  M   YP L + K  IE   ++E+
Sbjct: 295 RRILRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLMPD-YPLLAEHKESIEAECKAEE 353

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TLD+G+ L +  L         +G VAFKLYDT+G PLD+  D+L  + +  +++
Sbjct: 354 ELFLATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLRHKNIT-VNL 411

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   ++EQ+ R++                  K+ +    F   DL   S  +      
Sbjct: 412 EEYQACMQEQQQRSQ-----------------FKQSHAKEGFKNLDL---SALV------ 445

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
               P + +     S+   I+     +EEA    +  +V D+TPFYA+ GG +GD G  +
Sbjct: 446 ----PNVFVGYECESVQAKIL--ALYLEEA---NRAFLVLDKTPFYAQGGGPIGDRGVIL 496

Query: 536 GDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                L  Q+ D QK  E       +VE   L    S++  + +  R +++ +HSATHLL
Sbjct: 497 DTNHVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEVSH--RLEIAKHHSATHLL 554

Query: 594 HHALSTILGS---------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           H AL  ILG           + Q GS I P  LRFD +  + +   E++ IE  VN  IA
Sbjct: 555 HLALREILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIA 614

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +P     M    A  SGA  L   KY ++VRVV +    G V +   CGG HV ++ +
Sbjct: 615 LAMPTSVENMQALQAKESGAIMLFEDKYLEQVRVVKIA---GSVEA---CGGVHVQNSAQ 668

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
           I    I+  SS+ AG+RRIEA+ G+ A    + Q+ ++
Sbjct: 669 IGGFAIIKVSSVSAGVRRIEAVCGE-AYYDFIAQERRI 705


>gi|194759416|ref|XP_001961945.1| GF14684 [Drosophila ananassae]
 gi|190615642|gb|EDV31166.1| GF14684 [Drosophila ananassae]
          Length = 966

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 318/968 (32%), Positives = 480/968 (49%), Gaps = 95/968 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRDAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMAKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW  LT+   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWQFLTERLGLP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  +LW  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDKASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+QF +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L +A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGTDDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQATIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+    +  E  +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLQ-IDM----EGYEAAKHNSYILSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNG-VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K   + +  +       G  +S + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VAPTNDSFKYKYEAVSDERDSAYNYGECTSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E+ 
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVAKTENL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684
             +++  N+P+  +    + A+A    G  ++    Y D VRV+S            + E
Sbjct: 656 TKEMVYNNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSE 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   + 
Sbjct: 714 AGEKTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773

Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777
           +         +  G+     V+EI E                E R L       L   +R
Sbjct: 774 IVKLKATIDADTSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833

Query: 778 KLQLNVEDLS-------CHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            L+  V           C K  D +  +  + +  ++K L + +  ++ ++ +   M   
Sbjct: 834 ALRAAVSTTVVEKAKELCEKNPDAIVLVEQLEAFNNTKALDAALKQVRSQLPNAAAMFFS 893

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+
Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDE 952

Query: 888 AIAGVASF 895
            +     F
Sbjct: 953 IVELATKF 960


>gi|291390471|ref|XP_002711725.1| PREDICTED: alanyl-tRNA synthetase [Oryctolagus cuniculus]
          Length = 945

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 291/790 (36%), Positives = 421/790 (53%), Gaps = 73/790 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS  IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSGTIPLDDPTLLFANAGMNQFKPIFLNTIDPTHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F +   RLY+T  D+                 KI+     DNFW M +TGPCGPCSEI +
Sbjct: 126 FGIPIERLYVTYLDD----------------TKILPGNMKDNFWEMGDTGPCGPCSEIHY 169

Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDTGMGLER+ 
Sbjct: 170 DR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMGLERLV 225

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSSSFL 285
           +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH R+ +  
Sbjct: 226 SVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDVDGIDMAYRVLADHARTITVA 285

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL +  
Sbjct: 286 LADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDP 345

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+   I
Sbjct: 346 DMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLI 405

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +     L  
Sbjct: 406 AEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRAKGLEA 457

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                K + +       +   + V++++ A+ ++   VEE  +GQ+  VV D+T FYAE 
Sbjct: 458 TDDSPKYNYQADSSGSYV-FESTVATVL-ALRREKMFVEEVSTGQECGVVLDKTCFYAEQ 515

Query: 525 GGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           GGQ+ D G  +       D     + + Q +  G +V H     G LR    + L ID  
Sbjct: 516 GGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTVYGSLRVGDQVRLFIDEP 573

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  E+ 
Sbjct: 574 RRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEI 632

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------YED-----G 686
            N++IA   PV T+      A A  G  A+    Y D VRVVS+        ED     G
Sbjct: 633 ANEMIAAAKPVYTQDCALAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSGPAG 692

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
            + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L     K +SL 
Sbjct: 693 SLTSVEFCGGTHLRNSSHAGDFVIVTEEAIAKGIRRIVAVTGAEAQKAL----RKAESLK 748

Query: 747 SFLKVSQGNV 756
             L V +  V
Sbjct: 749 KSLSVMEAKV 758


>gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa]
 gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa]
          Length = 973

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 300/851 (35%), Positives = 438/851 (51%), Gaps = 73/851 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R TF++FF++  H    SS ++P NDPTL+F N+GM  FK IF G   P      + +A
Sbjct: 69  VRDTFIKFFEEKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRA 128

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L
Sbjct: 129 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYKL 187

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  DE        EA  +W +   L   +++     DNFW M +TGPCGPC
Sbjct: 188 PADRIYATYFGGDEKAGLAPDNEARDIWLQF--LPPGRVLPFGCKDNFWEMGDTGPCGPC 245

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D+       +  ++++    +EIWNLVF+QF +++      LP   +DTGMG ER
Sbjct: 246 TEIHYDRVGNRNAAMLVNNDD-PTCLEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGFER 304

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSSS 283
           + +VLQ K +NYD D+F  +  A +Q TG +     +         + +RV+ DH+R+ S
Sbjct: 305 LTSVLQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDVDGVDMAYRVVADHIRTLS 364

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG  P NEGR YVLRRI+RRA+ Y + +L   E     L+  +   M   +PEL +
Sbjct: 365 FAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNVVVKVMSDVFPELKR 424

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV-AFKLYDTHGLPLDIM 401
            +  I ET+ +E+  FGKTL +G+         + + ++L+G      L     LP+   
Sbjct: 425 NEEHIRETIAAEEASFGKTLLKGIEKFKKAAQEV-EGKVLSGQARCVCLVGYIWLPIRFD 483

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            +    RGL  +D+  FN A++E R R+R        G       ++     AT  +   
Sbjct: 484 SE---ERGLR-VDVEGFNNAMDEARERSRNAQNKQAGG-------AIVMDADATSALHK- 531

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
             +G     +  K +C            S++KAI    E +E A +  +V +V + T FY
Sbjct: 532 --KGVSATDDSFKFIC-------FEDHESVIKAIYNGSEFLESAAAANEVGIVLESTSFY 582

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQN 579
           AE GGQ+ DTG   G     Q+ +VQ    G  VH   +    G       +   +DY  
Sbjct: 583 AEQGGQIFDTGVLEGPFGSFQVCNVQIFG-GFIVHIGSLTGVSGRFSVGEKVTCKVDYDR 641

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+    L+ IE  V
Sbjct: 642 RKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPELLRKIESIV 701

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGG 687
           N  I   L V  +     +A   +G  A+ G  Y D VRVVS+           E E+  
Sbjct: 702 NGQIKDELGVFAKEATLAEAKQINGLRAVFGEVYPDPVRVVSIGRKVEDLLANPENEEWL 761

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQ--DE 740
             S+ LCGGTH+++T E     ++SE  I  GIRRI A+T   A      +H + Q  DE
Sbjct: 762 SISAELCGGTHITNTREAKAFALLSEEGIAKGIRRITAVTTDGAFKAMELAHSLEQEVDE 821

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
             K+  S L+    ++  RV+       K   I AK  +  N    +  KIA+ N    +
Sbjct: 822 ASKADGSLLEKKVASLKTRVDSALIPAAKKADIRAKISVLQNKVRKAQKKIAEENMQKAV 881

Query: 801 ISEVDSKELKS 811
               +  E+ S
Sbjct: 882 EVAAEMAEVAS 892


>gi|326471957|gb|EGD95966.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 963

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 330/973 (33%), Positives = 500/973 (51%), Gaps = 116/973 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTG+G 
Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGY 257

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L  A + +TG + Y G       + I   +RV+ DHLR+
Sbjct: 258 ERLVSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRT 317

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE
Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPE 377

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTH 394
           + + +  + E L  E+  F KTLDRG    +        S  GK   L+G   ++LYDT 
Sbjct: 378 IKRKQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTF 434

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449
           G P+D+ + +   R L  ID   F    EE R +A+  S G     ++ +  ++      
Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTL 489

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506
           EK G  +         +KF K                 + + +KAI    E+++   +  
Sbjct: 490 EKNGVPK-----TNDDAKFRK---------------GNIVANIKAICHGKEVIDSTKDIP 529

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
           + +++ ++ D+T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G  
Sbjct: 530 ANEQIGIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H  
Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKS 648

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684
            I+ ++L+ IE    D I QN  V ++ +    A   +G  A+ G  Y D VRVVSV  E
Sbjct: 649 AISDSDLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVE 708

Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731
              +            S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A  
Sbjct: 709 LDEILKNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHE 768

Query: 732 -------------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYR 768
                        R   M     +D ++KSL   L       V +     +  +I ++  
Sbjct: 769 VQRIAREFGERLNRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKIT 828

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIM 826
             Q    K +++  ++ +S +   + +  S +I    +   K++ ++L   K   SG  +
Sbjct: 829 DAQKAAQKAEVKTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKAL 888

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            V  +   K +    VT DL  +  +A + A   + ++GG  GG  P +A   G   NK 
Sbjct: 889 YVFAADTSKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKV 947

Query: 886 DQAIAGVASFLKK 898
           D+A+     +L+K
Sbjct: 948 DEALDEATKYLEK 960


>gi|195339200|ref|XP_002036208.1| GM12994 [Drosophila sechellia]
 gi|194130088|gb|EDW52131.1| GM12994 [Drosophila sechellia]
          Length = 966

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 316/968 (32%), Positives = 484/968 (50%), Gaps = 95/968 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +++FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRNAYMDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K   + +  +       GV SS + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCSSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E  
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684
             +++ +N+P+  +    + A+A    G  ++    Y D VRV+S            + E
Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPDSE 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   + 
Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALQKSETFEQE 773

Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777
           +       + +  G+     V+EI E                E R L       L   +R
Sbjct: 774 IVRLKATIENDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829
            L+  V      +   + + N  + ++ E      ++K L + +  ++ ++     M + 
Sbjct: 834 ALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLS 893

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+
Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDE 952

Query: 888 AIAGVASF 895
            +   + F
Sbjct: 953 IVQLASKF 960


>gi|298708166|emb|CBJ30506.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 992

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 287/803 (35%), Positives = 424/803 (52%), Gaps = 73/803 (9%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            S +R +F+ FF +K+ H    SS ++P +DPTL+F N+GM  FK +F G   P      
Sbjct: 33  ASRVRDSFISFFTEKHDHTFWKSSPVVPHDDPTLLFANAGMNQFKPLFLGTADPALPLSK 92

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+ LT  
Sbjct: 93  LTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGSYFKEEAIGYAWECLTTV 152

Query: 118 FDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY T +  DE      DE+A K+W K   L   +++  +  DNFW M + GPC
Sbjct: 153 YKLDPSRLYATYFGGDEKLRVGADEDAKKIWLKY--LPESRVLPFSLADNFWEMGDVGPC 210

Query: 170 GPCSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPC EI +D+     GG   + +   +    IEIWN+VF+Q+ ++N      LP   IDT
Sbjct: 211 GPCVEIHYDR----IGGRDAAKDVNMDKPEVIEIWNVVFIQYNRENDGSLKELPNKHIDT 266

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVD 277
           G+G ER+A++LQ K +NYD D+F  + +A    TG + Y G        N  + +RV+ D
Sbjct: 267 GLGFERLASILQGKMSNYDTDVFVPIFEAIRSATGARPYTGKVGEEDSDNMDMAYRVVAD 326

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSA 336
           H+R+ +  I DG  P+N+GRGYVLRR++RRA+ Y + +   +P   H L+P +   M   
Sbjct: 327 HIRTLTIAITDGCTPSNDGRGYVLRRVLRRAIRYGQQVLGGKPGFFHTLVPVVVGLMKGI 386

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL+ A+  +   ++ E+  F KTLD+GL   + V + LG  ++  G  AF+LY + G 
Sbjct: 387 FPELVDAEARVTAVIKDEEMSFNKTLDKGLKEFNKVAAALGDSKVFPGTAAFQLYSSMGF 446

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKI-------WFSL 448
           PLD++  +   +GL+ +D+  F+Q + ++++++ +A S    +G    I       W S 
Sbjct: 447 PLDLLTLMAEEKGLS-VDVEGFDQKMSDEKTKSNQARSNQKAAGGKPMILEAEQMDWLS- 504

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           K    AT+  G    R +   +   KVL     + +  G        V     V +    
Sbjct: 505 KRDTEATEASG----RYTWHQQPAAKVLA----LFVGKGEGEDGVGFVPSASAVADEADQ 556

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIF-VHHAIVERGILR 566
           Q V VV D T FYAE GGQ+ D G  ++ DG        Q  + G + +H   V+ G L 
Sbjct: 557 QTVGVVLDCTSFYAEGGGQIYDIGELSLSDG-SGSFAVRQVSSFGAYTLHIGQVKAGTLS 615

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH---VSQNGSCITPDGLRFDVTH 623
               +V  +DY+ R  ++ NH+ TH+L+ AL  +L        Q GS +  + LRFD + 
Sbjct: 616 VGSDVVCKVDYERRANVAPNHTMTHVLNFALRKVLDPSDGMCDQKGSFLDDEKLRFDFSW 675

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV- 681
           S  +T+ ++  +ED VND I +NLPV   +   E A        + G +Y D VRV+S+ 
Sbjct: 676 SGSLTAEQVADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSIG 735

Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                     E       S   CGGTH+S+T E     I+ E+ I  G+RRI A+T    
Sbjct: 736 QDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVT---- 791

Query: 732 RSHLMGQDEKLKSLASFLKVSQG 754
           R   +   E+ K+    L V+ G
Sbjct: 792 RGLALAAVERAKAFEQQLDVADG 814


>gi|195115683|ref|XP_002002386.1| GI12987 [Drosophila mojavensis]
 gi|193912961|gb|EDW11828.1| GI12987 [Drosophila mojavensis]
          Length = 967

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 315/974 (32%), Positives = 486/974 (49%), Gaps = 106/974 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRDAYLNFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT   +L 
Sbjct: 69  VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTDRLNLP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDAANGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +        +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L     E +G A+PE+ 
Sbjct: 305 TIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVTTVVELLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400
           +    I + +  E+++F KTL RG  LL+  +  LG D+  + GDVA++LYDT+G P+D+
Sbjct: 365 KDPQHIMDIINEEEQQFLKTLSRGRNLLNRTIEKLGADQKTIPGDVAWRLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEKYGA 454
            Q +   + L  ID+  ++ A    +  +   S G G+   ++I         L+EK   
Sbjct: 425 TQLMAEEKSLQ-IDMDGYDAA----KHNSYILSQGKGASKIDEINLDVHAISELQEKGVP 479

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
                +  +  ++  + D            ++  S IV A+  + + V+E  SGQK  +V
Sbjct: 480 PTNDSFKYIYEAESNERDSAY-------KFSDCTSKIV-ALRYENKFVQEITSGQKAGIV 531

Query: 515 FDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            D+T FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     + 
Sbjct: 532 LDKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDEVQ 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++
Sbjct: 591 LHIDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQV 650

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-------- 681
              E    D++ + +P+  +    + A+A    G  ++    Y D VRV+S         
Sbjct: 651 AKTEQLTRDMVYKEMPIYAK--ESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLE 708

Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
              + E G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   L   
Sbjct: 709 SQPDSEAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKS 768

Query: 739 DEKLKSLASFLKVSQGNVVGR--------VEEIWEEYRKLQLIHAKR----------KLQ 780
           +   K +++     + +  G+        + E+ E+     + + K+          K  
Sbjct: 769 EGFEKEISTLKATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKT 828

Query: 781 LNVEDLSCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI--- 824
           L+ ++ +      V  +               ++ ++++      +DA  K+++S +   
Sbjct: 829 LDDKERALRAAVSVTVVEQAKALCEANPKANVLVQQLEAYNNTKALDAALKQVRSQLPDA 888

Query: 825 -IMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             M V +  + KK   L  V +  +++   A +  +  + VL GG GGG+P  AQ+ G N
Sbjct: 889 AAMFVSVDADSKKVFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSN 947

Query: 882 GNKADQAIAGVASF 895
             + D+ +   + F
Sbjct: 948 FERVDEIVQLASKF 961


>gi|157115817|ref|XP_001658296.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108883466|gb|EAT47691.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 966

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 315/979 (32%), Positives = 498/979 (50%), Gaps = 118/979 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           IR  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +   
Sbjct: 10  IRNAFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMAKWVRT 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKLP 129

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPCGPCS
Sbjct: 130 KDRLYVTYFGGHPESGLEPDLECREIWIKL-GVKEEHILPGSMKDNFWEMGETGPCGPCS 188

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+QF ++      +LPK  ID GMG E
Sbjct: 189 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMGFE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q+K +NYD D+F  L +A ++ TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 246 RLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPSYQGRVGADDVDGVDMAYRVLADHARTI 305

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G  +PE+ 
Sbjct: 306 TIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVFLLGDTFPEVK 365

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D+ 
Sbjct: 366 KDPQNIKNIINEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPIDLT 425

Query: 402 QDILCARGLAGIDIISFNQA------LEEQRSRARAHSLGLG----SGTTEKIWFSLKEK 451
           Q ++       ID+  + +A      L + + +++A ++ L     S   EK   +  + 
Sbjct: 426 Q-LMAEEKNMTIDMEGYEKAKHESYILSQGKEKSKAATVDLDVHAISELQEKKVPTTDDS 484

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
           +        D +   KF   + KVL                 A+      V+E  +GQ+ 
Sbjct: 485 FKYRYKADVDPMAEYKFEPCNGKVL-----------------ALRANNIFVDEVQAGQEC 527

Query: 512 EVVFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            V+ D+T FYAE+GGQ+ D G    +GD      +  V  +  G  +H  +VE GILR  
Sbjct: 528 AVILDKTNFYAESGGQIYDQGYLVKVGDESTEFNVNLVYNRG-GYIIHIGVVE-GILRVG 585

Query: 569 MSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +
Sbjct: 586 DEVACHMDTL-RRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKSAM 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
           T  ++   E    +++ +N+ +  +      A +  G  ++    Y D VRV+S      
Sbjct: 645 TVEQVAESERLTREVVKKNMQIYAKESKLSVAKSIKGLRSVFDEVYPDPVRVISFGVPVE 704

Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
                 E E+G   S   CGGTH+  +G +    I +E +I  GIRRI A+TG  A   L
Sbjct: 705 NLEANPEGEEGVETSVEFCGGTHLHQSGHMWDFVITTEEAIAKGIRRIVALTGPEALKAL 764

Query: 736 MGQ---DEKLKSLASFLKVSQ-----GNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---- 783
                 + +L +L S ++  +       +V ++ E+ E+  +  + + K+    NV    
Sbjct: 765 KKTELLENELNALKSTIEADKTGKDSKELVKKIVELNEDVSQAVIPYVKKDEIRNVLKSL 824

Query: 784 -----------------------EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQK- 818
                                  ++LS     D  F+ H +    ++K L S +  ++K 
Sbjct: 825 KKTLDDKERAARAAVSTTVVEKAKELS-ESNKDAPFLVHRMEAYNNTKALDSALKEVRKI 883

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD--LARLSAKVLGGGGGGGRPHMAQ 876
             +   + +      KK   L  V +  +++    +  ++ +S  +  GG GGG+P  AQ
Sbjct: 884 NPEQSALFVSSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM--GGKGGGKPESAQ 941

Query: 877 SGGPNGNKADQAIAGVASF 895
           + G N +K ++ +     F
Sbjct: 942 ASGANFDKVEEILELARQF 960


>gi|322783659|gb|EFZ10997.1| hypothetical protein SINV_01057 [Solenopsis invicta]
          Length = 952

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 288/780 (36%), Positives = 421/780 (53%), Gaps = 66/780 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
           N   IR  +++FF+  GHE + SSS IP +DP+L+FTN+GM  FK IF G   P      
Sbjct: 6   NAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPSLLFTNAGMNQFKPIFLGTVDPNSDMAK 65

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT  
Sbjct: 66  WVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTDV 125

Query: 118 FDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L   RLY+T +          D+E   LW  + G+ A  ++     DNFW M ETGPC
Sbjct: 126 LKLPADRLYVTYFGGDMKSGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSE+ +D+     GG   +   + +    +EIWNLVF+Q+ ++       LPK  ID 
Sbjct: 185 GPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNREPDGSLKPLPKKHIDC 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVD 277
           G+GLER+ +V+Q+K  NYD DLF  L  A E+ TG   Y+G    +++    + +RV+ D
Sbjct: 241 GLGLERLISVIQDKRANYDTDLFMPLFDAIEKGTGAPPYKGKIGADDVDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSA 336
           H R+ +  +ADG +P N GRGYVLRRI+RRA+ YA      +P     L  +  E +G  
Sbjct: 301 HARTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGDV 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PE+ +    I E +  E+ +F KTL RG  LL+  ++ L    ++ GDVA++LYDT+G 
Sbjct: 361 FPEVKRDPQSIIEIINEEEIQFLKTLSRGRNLLNRTIAKLESTNVVPGDVAWRLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   +GL  ID+  +    EE + +A+  S     G  ++I   +   +  T+
Sbjct: 421 PIDLTQLMTEEKGLK-IDMTGY----EEAKKQAQLISQNKAGGVDDQINLDV---HAITE 472

Query: 457 FIGYDLLRGSKFMKEDRKV--LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
                +       K D KV    Q    D      +++ A+ +    V+E  SG++V ++
Sbjct: 473 LQNQGVKPTDDSPKYDYKVTNTVQYNEYDFAPCTGTVI-ALRRAKAFVDEVSSGEEVGIL 531

Query: 515 FDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            D+T FYAE GGQ+ D G  +    +   +++ +VQ +A G  +H   V  G LR    +
Sbjct: 532 LDRTNFYAEQGGQIFDEGFLVKVDDEATEIRVKNVQVRA-GYVLHIGTVGEGKLRKGDKV 590

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D + RR +  NHSATH L++AL  +LG+   Q GS + PD LRFD T+  P+T+ +
Sbjct: 591 HTNVDTKRRRFVMANHSATHALNYALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTKQ 650

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV----- 681
           L   E    ++I  N     +I  +E ++A      G  A+    Y D VRVVS+     
Sbjct: 651 LLDTEVATQEMIKDN----KQIYTKESSLAIAKTIQGLRAMFEETYPDPVRVVSMGVSVE 706

Query: 682 EYEDGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           + E   +  +AL      CGGTH+  T  I    I SE +I  GIRRI A+TG  A   L
Sbjct: 707 KLESDPLSKAALETSVEFCGGTHLHYTAHIGDFVIASEDAIAKGIRRIVALTGPEATKAL 766


>gi|83319899|ref|YP_424149.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123535930|sp|Q2SSW4|SYA_MYCCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83283785|gb|ABC01717.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 896

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 293/932 (31%), Positives = 486/932 (52%), Gaps = 106/932 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P    +T 
Sbjct: 6   TNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT +  FD+D
Sbjct: 66  SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDID 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+GE
Sbjct: 122 KNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIFYDRGE 180

Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLER A++
Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFASI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283
            Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH+R++ 
Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP L+  
Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLVDK 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           K L+E+T++ E+E+F KTL +G  LL+ ++    K+ + + D A  L++++G P++   +
Sbjct: 361 KSLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462
           I     +  +DI  F + LE+ +   R     L +   +   F+ LK +   ++F G+  
Sbjct: 418 ISELSNVT-VDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S+  +++ KV+                     Q ++  E+++ Q+V V+ D+TPFYA
Sbjct: 472 ---SEISRDNAKVIY----------------MFTDQKQV--ESITDQEVFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V+  +   ++ +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQDTLKLNDL-INCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LGS V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGSSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKVDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749
           T EI    I    S  +G+ RI+ +T  +  +  + +             +K       L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744

Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
           K  Q                      +++ ++ ++ ++Y K    LI A + L+      
Sbjct: 745 KNDQLENIYLEIKNITINKDNLILIKDLLDKLRDLNKDYDKKVNDLITANKLLKYKDLTP 804

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S +K  +VN +    ++++ ++LK + D L+ K    I++L+  + E    +++ V++ L
Sbjct: 805 SLNK-DNVNEIKLETTDLNIRDLKQLADDLRNKYNDLIVILLSSTNENNF-IVVAVSQSL 862

Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876
            +++ A+D+       L G    GGG  ++AQ
Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890


>gi|326477176|gb|EGE01186.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 963

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 330/973 (33%), Positives = 500/973 (51%), Gaps = 116/973 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTG+G 
Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGY 257

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L  A + +TG + Y G       + I   +RV+ DHLR+
Sbjct: 258 ERLVSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRT 317

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE
Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPE 377

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTH 394
           + + +  + E L  E+  F KTLDRG    +        S  GK   L+G   ++LYDT 
Sbjct: 378 IKRKQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTF 434

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449
           G P+D+ + +   R L  ID   F    EE R +A+  S G     ++ +  ++      
Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTL 489

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506
           EK G  +         +KF K                 + + +KAI    E+++   +  
Sbjct: 490 EKNGVPK-----TNDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIP 529

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
           + +++ ++ D+T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G  
Sbjct: 530 ANEQIGIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H  
Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKS 648

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684
            I+ ++L+ IE    D I QN  V ++ +    A   +G  A+ G  Y D VRVVSV  E
Sbjct: 649 AISDSDLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVE 708

Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731
              +            S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A  
Sbjct: 709 LDEILKNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHE 768

Query: 732 -------------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYR 768
                        R   M     +D ++KSL   L       V +     +  +I ++  
Sbjct: 769 VQRIAREFGERLNRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKIT 828

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIM 826
             Q    K +++  ++ +S +   + +  S +I    +   K++ ++L   K   SG  +
Sbjct: 829 DAQKAAQKAEVKTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKAL 888

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            V  +   K +    VT DL  +  +A + A   + ++GG  GG  P +A   G   NK 
Sbjct: 889 YVFAADTSKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKV 947

Query: 886 DQAIAGVASFLKK 898
           D+A+     +L+K
Sbjct: 948 DEALDEATKYLEK 960


>gi|321477760|gb|EFX88718.1| hypothetical protein DAPPUDRAFT_191289 [Daphnia pulex]
          Length = 987

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 293/781 (37%), Positives = 426/781 (54%), Gaps = 60/781 (7%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           + + IR  +++FF +K  H  + SSS IP +DPTL+F N+GM  FK +F G   P     
Sbjct: 6   SAAKIRQMYMDFFIEKKSHIYVHSSSTIPKDDPTLLFANAGMNQFKPLFLGTVDPNSDMS 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT 
Sbjct: 66  KWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCTWAWELLTD 125

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            F L + RLY+T +          DEE  ++W  + GL A++I+  +  DNFW M + GP
Sbjct: 126 VFQLPKDRLYVTYFGGNENAGLQPDEECRQIWLSL-GLPAERILPGSMKDNFWEMGDVGP 184

Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPCSEI FD+     GG   +   + +    +EIWNLVFM F ++       LP+  ID
Sbjct: 185 CGPCSEIHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFMTFNRETDSSLKPLPRKHID 240

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN------NIVN--HRVIV 276
            GMG ER+ +V+Q+K +NYD D+F+ + +A ++ T    Y+G       N V+  +RV+ 
Sbjct: 241 CGMGFERLVSVIQDKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGAEDVNGVDMAYRVLA 300

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGS 335
           DH R+ +  ++DG  P N GRGYVLRR++RR + YA      +P     L+P +C  +G 
Sbjct: 301 DHARTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQVLGP 360

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PE+ +   L+ + +  E+ +F KTL RG  LL+  +S L     L GDVA++LYDT+G
Sbjct: 361 TFPEVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRLYDTYG 420

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ Q +   +GL+ ID++++    EE + +A+  S G GSG  + I F +   +  T
Sbjct: 421 FPVDLTQLMSEEKGLS-IDMVAY----EEAKKQAQLLSQGKGSGVDDTIAFDV---HAIT 472

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQ--KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           +     +       K + K +      P +     S ++ AI  Q    EE  SG +  +
Sbjct: 473 ELQNKGVPPTDDSFKYNYKSVSDAVDSPYEFDVCTSKVI-AIRFQKAFHEEVSSGVECGI 531

Query: 514 VFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           + D+T FYAE+GGQ  D G    IGD G    + +VQ +  G  +H   VE G LR    
Sbjct: 532 LLDRTSFYAESGGQAYDEGFITKIGDEGTEFTVKNVQVRG-GYVIHLGNVE-GTLRVGDE 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L+ID   RR +  NH+ TH+L++AL  ++G+   Q GS + PD +RFD T+   +T  
Sbjct: 590 VKLSIDQSRRRLIMSNHTGTHVLNYALRQVVGNEADQRGSLVAPDRMRFDFTNKAAMTVD 649

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------- 681
           ++K  E   N++I +N  V  +  +   A A  G  A+    Y D VRVVS+        
Sbjct: 650 QVKQTERIANEMIRKNQEVYAKESSLVVAKAVQGLRAVFEETYPDPVRVVSIGIPVEQLE 709

Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G   S   CGGTHV  +G I    I +E +I  GIRRI AITG  A   L   
Sbjct: 710 ADPANPAGNSTSIEFCGGTHVKRSGHIGDFVISAEEAIAKGIRRIVAITGPEASKALKKA 769

Query: 739 D 739
           D
Sbjct: 770 D 770


>gi|296806327|ref|XP_002843973.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238845275|gb|EEQ34937.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 963

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 330/973 (33%), Positives = 501/973 (51%), Gaps = 116/973 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTIDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PERLYVTYFEGNEGAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   IDTG+G 
Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNKHIDTGLGY 257

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ+K++NYD D+F  L  A + +TG  +Y G       + I   +RV+ DHLR+
Sbjct: 258 ERLVSILQDKSSNYDTDVFTPLFTAIQNITGARRYTGKFGAEDTDGIDTAYRVVADHLRT 317

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE
Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYLKVEIGSFFSKLVPALVEQMGDMFPE 377

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRG-----LVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
           + + +  + E L  E+  F KTLDRG           + +  GK   L+G   ++LYDT 
Sbjct: 378 IKRKQNDVMEILDEEEVSFAKTLDRGERQFEYYAQQALEAGAGK---LHGADVWRLYDTF 434

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449
           G P+D+ + +   R L  ID   F    EE R +A+  S G     ++ +  ++      
Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTL 489

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506
           EK G  +         +KF K                 + + +KAI    E+++   +  
Sbjct: 490 EKNGVPK-----TNDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIP 529

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
           + +++ ++ D+T FYAE GGQ  DTG  I DG   L + +VQ    G  +H   ++ G  
Sbjct: 530 ANEQIGIILDKTNFYAEQGGQEYDTGKIIIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H  
Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKS 648

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684
            ++ ++L+ IE    D I QN  V ++ +    A   +G  A+ G  Y D VRVVSV  E
Sbjct: 649 AVSDSDLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVE 708

Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731
              +            S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A  
Sbjct: 709 LDEILKNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHE 768

Query: 732 -------------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYR 768
                        R   M     +D ++KSL   L       V +     +  +I ++  
Sbjct: 769 VQRVAREFGERLNRFEKMAAGPERDAEVKSLQVDLNQLTISAVEKAKYRNQFTQIHKKIT 828

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIM 826
             Q    K +++  ++ +S +   + +  S +I    S   K++ ++L   K   SG  +
Sbjct: 829 DAQKAAQKAEVKTAIDAISSYFEQNKDSQSLVIKLPISANQKAISESLAHVKSKLSGKAL 888

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            V  +   K +    VT DL  +  +A + A   + ++GG  GG  P +A   G   NK 
Sbjct: 889 YVFAADTSKVAHGCYVTPDLTAKGASANEWASAVSGIVGGKAGGKAP-VAIGNGTEVNKV 947

Query: 886 DQAIAGVASFLKK 898
           D+A+     +L+K
Sbjct: 948 DEALDEATKYLEK 960


>gi|24582809|ref|NP_523511.2| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|45552267|ref|NP_995656.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|75027177|sp|Q9VLM8|SYAC_DROME RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|7297398|gb|AAF52657.1| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|45445248|gb|AAS64737.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster]
          Length = 966

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 317/970 (32%), Positives = 482/970 (49%), Gaps = 99/970 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K   + +  +       GV +S + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E  
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV-----------E 682
             +++ +N+P    I  +E  +A      G  ++    Y D VRV+S            +
Sbjct: 656 TKEMVYKNVP----IYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHA 775
           + +         +  G+     V+EI E                E R L       L   
Sbjct: 772 QEIVRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDK 831

Query: 776 KRKLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIML 827
           +R L+  V      +   + + N  + ++ E      ++K L + +  ++ ++     M 
Sbjct: 832 ERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMF 891

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K 
Sbjct: 892 LSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKV 950

Query: 886 DQAIAGVASF 895
           D+ +   + F
Sbjct: 951 DEIVQLASKF 960


>gi|312379940|gb|EFR26076.1| hypothetical protein AND_08072 [Anopheles darlingi]
          Length = 975

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 318/977 (32%), Positives = 493/977 (50%), Gaps = 103/977 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF +  H  + SSS+IP +DPTL+F N+GM  FK IF G   P  +   
Sbjct: 12  TASQIRKIFLDFFAEKKHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPSSEMAR 71

Query: 63  TV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            V     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLT+ 
Sbjct: 72  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWELLTER 131

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E   +W ++ G+    ++  +  DNFW M ETGPC
Sbjct: 132 LRLPKDRLYVTYFGGHPESGLEPDLECRSIWIEL-GIPEAHVLPGSMKDNFWEMGETGPC 190

Query: 170 GPCSEIFFDQ---GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSE+ FD+   G  +P  +   +++    +EIWNLVF+Q+ ++      +LPK  ID 
Sbjct: 191 GPCSELHFDRIGGGRSVPELV---NQDDPDVLEIWNLVFIQYNREQDGSLKLLPKKHIDC 247

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMG ER+ +V+Q+K +NYD D+F  L  A    TG    G  +         + +RV+ D
Sbjct: 248 GMGFERLVSVIQDKRSNYDTDVFVPLFDAIRAGTGAPPYGGRVGAEDTDGVDMAYRVLAD 307

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G  
Sbjct: 308 HARTITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVDTVVELLGDT 367

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PE+ +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G 
Sbjct: 368 FPEVRKDPQHIKNVIGEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----EKY 452
           P+D+ Q ++       ID+  +      +R++  ++ +  G   ++     L      + 
Sbjct: 428 PVDLTQ-LMAEEKEMSIDMEGY------ERAKHESYLISQGKEKSKTATIDLDVHAISEL 480

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A Q    D     ++  E      Q     +  G    + A+   G  VEE  +GQ+  
Sbjct: 481 QAKQLAPTDDSTKYRYRAESTDPQAQY----VFEGCRGRIVALRFGGAFVEEVTAGQECG 536

Query: 513 VVFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           V+ D+T FYAE+GGQ+ D G    +GD      ++ V  +  G  +H  +VE G LR   
Sbjct: 537 VILDKTNFYAESGGQIYDQGYLVKVGDESSEFNVSLVYNRG-GYVLHIGVVE-GTLRVGD 594

Query: 570 SLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T
Sbjct: 595 EVDCHLD-TVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKAAMT 653

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------ 681
             ++   E    +++ +N+ V  +  N   A +  G  ++    Y D VRV+S       
Sbjct: 654 IEQVGEAERLTREVVRKNVQVFAKETNLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQ 713

Query: 682 ----EYEDGGV-HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                  D GV +S   CGGTH+  +G ++   I SE +I  GIRRI A+TG  A   L 
Sbjct: 714 LAADPTSDAGVLNSVEFCGGTHLHQSGHMVDFVITSEEAIAKGIRRIVALTGPEALKALQ 773

Query: 737 GQ---DEKLKSLASFLKVSQGNVVG------RVEEIWEEYRKLQLIHAK--------RKL 779
                +++++ L   ++ S     G      R+ E+ E+  +  + + K        + L
Sbjct: 774 KTESLEQEVRQLREKIEASGTVTTGAKEFVRRIVELTEDVSQAVIPYVKKDELRTVLKNL 833

Query: 780 QLNVEDLSCHKIADVN----FMSHIISEV--DSKELKSVMDALQ--KKIQSGIIMLVGIS 831
           +  ++D      A V+      +  +SE   D+  L   ++A    K + S +  +  I+
Sbjct: 834 KKTLDDRERAAKAAVSVEVIVRAKELSEANRDAPVLVHRLEAFSNTKALDSALKEVRKIN 893

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAK-------------VLGGGGGGGRPHMAQSG 878
            E+ A + + V ED    F    + + + +              L GG GGG+P  AQ+ 
Sbjct: 894 PEQSA-LFVSVDEDAGKIFCLASVPKGAVEKGLKANEWISHVAPLMGGKGGGKPESAQAS 952

Query: 879 GPNGNKADQAIAGVASF 895
           G +  KAD+ +    SF
Sbjct: 953 GGSWQKADEILELARSF 969


>gi|167518337|ref|XP_001743509.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778608|gb|EDQ92223.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1000

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 295/791 (37%), Positives = 426/791 (53%), Gaps = 98/791 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           N + +R T+++FF +K  H   PSSS +P +DPTL+F N+GM  FK +F G   P     
Sbjct: 8   NAAKVRQTYIDFFVEKKEHVFWPSSSSVPHDDPTLLFCNAGMNQFKKVFQGTVDPNSDMA 67

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            V + V + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AIQ +++LLT
Sbjct: 68  KVSRTVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKAEAIQWSFELLT 126

Query: 116 KEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + L   RLY T ++        ED EA +LW K+  L AD ++     DNFW M  TG
Sbjct: 127 EVYGLSADRLYATYFEGDTEQNIPEDVEAKELWLKL--LPADHVLPGNKKDNFWEMGATG 184

Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           PCGPCSE+ +D+     GG   +S   ++    +EIWNLVFMQF ++      +LP   I
Sbjct: 185 PCGPCSELHYDR----IGGRNAASLVNQDDPDVLEIWNLVFMQFNREPDASLRLLPARHI 240

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------VNHRVIV 276
           DTGMGLER+ +VLQ+K +NYD D+F+      +QV G +     +          +RV+ 
Sbjct: 241 DTGMGLERLVSVLQDKRSNYDTDVFQPYFDVIQQVCGCRPYAGKVGKEDDGIDTAYRVLA 300

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +  I+DG  P N GRGYVLR I+RRA+ +A   L   E     L+P +  ++G 
Sbjct: 301 DHIRTLTISISDGGEPDNTGRGYVLRLIIRRAVRFAEDYLKAPEYFFSSLVPTVVEQLGD 360

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PE+ +    + E L++E+++F +TL+RG  L     +    D +++G VA++L+ T+G
Sbjct: 361 AFPEIKRDPEHVIEVLKAEEKQFRRTLNRGRRLFQRA-ADKATDGVIDGHVAWQLWGTYG 419

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEE-----QRSRARA--------HSL----GLGS 438
            P+D+ + +   RGL  +D  +F  A EE     Q  +  A        H L      G 
Sbjct: 420 FPVDLTKVMAEERGLT-VDEKTFEAAREEAVKVSQMGKKMAIEGIDLDVHDLDKLKADGI 478

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
             T+    S K  YG      Y+      F   + KV+  +      + +     ++   
Sbjct: 479 AATDD---SFKYDYGLVGDNSYE------FKDLEAKVVALRTESGFVDSLDGSDDSV--- 526

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFV 555
                       V VV D+T FYAE GGQ  DTG    A G+ +   + DVQKK     +
Sbjct: 527 -----------NVGVVLDRTNFYAEQGGQTYDTGFFRDANGE-LDFTVMDVQKKGP-YCL 573

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H  ++  G L+   +L L+ D + RR    NH+ATH+L+ AL  +LG    Q GS + P+
Sbjct: 574 HIGVLSNGTLKVGDTLTLSFDVERRRPCMSNHTATHVLNFALRKVLG-EADQKGSLVEPE 632

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKY 672
            LRFD T  K +T  +++  E  VN+++    PV    M+   A A   +G  A+ G  Y
Sbjct: 633 RLRFDFTAKKGMTIEQIQQTEKLVNEVVNAKKPV--DAMDAPLASAREINGLRAMFGETY 690

Query: 673 NDRVRVVSV-----EYEDGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            D VRVVSV     +  D  V   AL      CGGTHV ++G+I+   I++E +I  GIR
Sbjct: 691 PDPVRVVSVGAIVKDVLDDPVSEVALANSIEFCGGTHVKNSGDIVQFAILNEEAISKGIR 750

Query: 722 RIEAITGQRAR 732
           RI A+TG  AR
Sbjct: 751 RIVAVTGSEAR 761


>gi|195473021|ref|XP_002088795.1| GE11031 [Drosophila yakuba]
 gi|194174896|gb|EDW88507.1| GE11031 [Drosophila yakuba]
          Length = 966

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 320/969 (33%), Positives = 485/969 (50%), Gaps = 97/969 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLSLP 128

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K   + +  +       GV +S + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E  
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVSKTEQL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684
             +++ +N+P+  +    + A+A    G  ++    Y D VRV+S            + E
Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPDSE 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---- 740
            G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +     
Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773

Query: 741 --KLKSLASFLKVSQGNVVGRVEEIWE----------------EYRKL------QLIHAK 776
             +LK+     K S  +    V+EI E                E R L       L   +
Sbjct: 774 IIRLKATIDTDK-SGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKE 832

Query: 777 RKLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLV 828
           R L+  V      +   + + N  + ++ E      ++K L + +  ++ ++     M +
Sbjct: 833 RALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFL 892

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D
Sbjct: 893 SVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEKVD 951

Query: 887 QAIAGVASF 895
           + +   + F
Sbjct: 952 EIVQLASKF 960


>gi|17861846|gb|AAL39400.1| GM03058p [Drosophila melanogaster]
          Length = 966

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 316/968 (32%), Positives = 482/968 (49%), Gaps = 95/968 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K     +  +       GV +S + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VPPTNDTFKYKYDAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E  
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684
             +++ +N+P+  +    + A+A    G  ++    Y D VRV+S            + E
Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSE 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   + 
Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773

Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777
           +         +  G+     V+EI E                E R L       L   +R
Sbjct: 774 IVRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829
            L+  V      +   + + N  + ++ E      ++K L + +  ++ ++     M + 
Sbjct: 834 ALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLS 893

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+
Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDE 952

Query: 888 AIAGVASF 895
            +   + F
Sbjct: 953 IVQLASKF 960


>gi|297626345|ref|YP_003688108.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922110|emb|CBL56678.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 895

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 320/925 (34%), Positives = 474/925 (51%), Gaps = 82/925 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I   F++FF   GH  +PS+SL+  NDPTL+F N+GMVPFK    G+    ++  T
Sbjct: 2   KAAEIGRRFVDFFVSKGHTEVPSASLL-YNDPTLLFVNAGMVPFKPYLMGELPAPWKRAT 60

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----E 117
           ++QKCVR      D++ VG+T RH TFF+MLGNFSFG YFK+ AI+ AW+L+T       
Sbjct: 61  SIQKCVRT----LDIEEVGKTTRHGTFFQMLGNFSFGDYFKKEAIEFAWELVTGPLAEGR 116

Query: 118 FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              D   +++TV        Y E D EA   W  + G+  + I      DN+W M   GP
Sbjct: 117 LGFDPNMVWVTVLGPGFHPDYPEGDTEARDTWLSL-GVPPEHIQGRGLKDNYWHMGVPGP 175

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFILPKM--- 222
            GPCSEI+ D+G    G   G   + +R++EIWNLVF   E    ++K++  I   M   
Sbjct: 176 GGPCSEIYIDRGPKY-GAEGGPEADEDRFLEIWNLVFETEELSTVRSKEDFDIAGPMKTR 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLR 280
           +IDTG GLER+A ++Q   N Y+ D    +I+ +  + G +Y  ++   V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIALLMQGVDNMYETDEVFPVIERAAAMAGKRYGADHTDDVRLRVVGDHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  L+ DG+ P NE RGYVLRR+MRR +   RLLG  +  +  LL      M + YPE+
Sbjct: 295 SSLMLMTDGVTPGNEARGYVLRRLMRRTIRSMRLLGVEKVSLTELLDVSRQCMHATYPEI 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLP 397
                 I++   +E E F +TL+ G  L D  ++     G +E L GD AF+L+DT+G P
Sbjct: 355 DDQWERIKDIADNESESFERTLNSGTQLFDMAVAEARAAGSNE-LGGDKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D  +F   +++Q++RA+A +        +   +      G T F
Sbjct: 414 IDLTLEMASEQGLH-VDETAFRTLMDQQKARAKADAKAKKGNLQDAESYRELRDRGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L                        V + V+ +V  G +V+   +GQ  EVV ++
Sbjct: 473 VGYSELT-----------------------VPTRVRGLVADGHVVDHLRAGQLGEVVLEE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G    D    ++ DVQ+   G+ V H +   G LR    +   +D 
Sbjct: 510 TPFYAEMGGQDADAGVLRSDAGEFEVIDVQRPVPGLVV-HTVRAGGELRPGDEVQAMVDA 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R+     HSATH++H AL  ++G   +Q GS   P  LRFD   S  +++A    IE 
Sbjct: 569 VHRQGACQAHSATHIIHAALRELVGPTATQAGSYNKPGYLRFDFNSSHGLSAALKAEIEA 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +L V    M    A   GA A+ G KY D VRVV    E GG  S  LC GT
Sbjct: 629 RCNAAIRDDLEVSATQMPLAQAKGMGAMAMFGEKYPDIVRVV----EMGGPWSRELCAGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV    +I +L ++ E S+ AG RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVLHASQIGMLNLLGEQSVGAGTRRVEALVSTDAFEHMAAERALVNQLTGTLKVQPDQLT 744

Query: 758 GRVEEIWE----------EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            RV  + E          E +  QL+    +L  + +D+       V+F S    +VD+ 
Sbjct: 745 DRVGALIEELKVAQKQIAELKAAQLLAGAPQLVSDAKDMWG-----VSFASKRYHDVDAG 799

Query: 808 ELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLG 864
            L+++   ++ +   +S ++ LVG S  K A +++  T    DR  NA  L R     + 
Sbjct: 800 ALRTLAGQVRDQFGDRSAVVALVGGSATKPA-LVVATTRAARDRGLNAGALVR-EGAGVL 857

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAI 889
           GG GGG+P +AQ GG +  KAD+A+
Sbjct: 858 GGNGGGKPDLAQGGGTDAGKADEAL 882


>gi|296231556|ref|XP_002761188.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic [Callithrix jacchus]
          Length = 968

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 308/859 (35%), Positives = 450/859 (52%), Gaps = 85/859 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            S IR  F+EFF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQRFIEFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF
Sbjct: 67  SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCG
Sbjct: 127 GIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLEDTKILPGNMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDTG
Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+
Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKILSLGDSKTIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   + 
Sbjct: 422 VDLTGLIAEEKGLL-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEEL 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
               L       K +         +   N V++++ A+ ++   VEE  +GQ+  VV D+
Sbjct: 474 RAQGLEVTDDSPKYNYHSDSSGNYV-FENTVATVL-ALRREKMFVEEVSTGQECGVVLDK 531

Query: 518 TPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           T FYAE GGQ+ D G  +     +  + + T    +  G +V H     G L+    + L
Sbjct: 532 TCFYAEQGGQIYDEGYLVKVDDSNEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYED-- 685
             E+  N++I    PV T+      A A  G  A+    Y D VRVVSV     E  D  
Sbjct: 651 KAEEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSVGVPVSELLDDP 710

Query: 686 ----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L     K
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL----RK 766

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSH 799
            +SL +                      L L+ AK K Q         +IAD+     + 
Sbjct: 767 AESLKT---------------------SLSLMEAKVKAQTAPNKDVQREIADLGEVLATA 805

Query: 800 IISEVDSKELKSVMDALQK 818
           +I +    EL+  + +L+K
Sbjct: 806 VIPQWQKDELRETLKSLKK 824


>gi|145616046|ref|XP_361064.2| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15]
 gi|145009817|gb|EDJ94473.1| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15]
          Length = 961

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 332/968 (34%), Positives = 498/968 (51%), Gaps = 103/968 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPV--YQA 60
           ++R TFL +F++ GH ++PSSS++P +DPTL+FTN+GM  FK IF    G+  P+   + 
Sbjct: 11  TVRKTFLNYFEERGHTVVPSSSVVPHSDPTLLFTNAGMNQFKPIFLGTIGKTDPMAGLKR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI ++W+LLTK + L
Sbjct: 71  AVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISMSWELLTKVYGL 130

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  RLY+T +        + D EA  LW + +G+  D I+     DNFW M + GPCGPC
Sbjct: 131 DPARLYVTYFEGNPEMGLEPDLEAKNLWLE-NGVPEDHILPGNMKDNFWEMGDQGPCGPC 189

Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG   +   + +    +E+WN VF+QF++Q  +    LP   +DTGMG
Sbjct: 190 SEIHYDK----VGGRNAAHLVNMDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLR 280
            ER+ + LQ KT+NY  D+F  L    ++VTG      KY  ++       +RV+ DH+R
Sbjct: 246 FERLVSALQNKTSNYATDVFSPLFARIQEVTGAREYTDKYGKDDADGIDTAYRVVADHIR 305

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
             +F IADG +P N+GRGYV+RR++RR + YAR     E       +LP L   MG  +P
Sbjct: 306 LMAFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGGFFSQILPTLVEHMGEQFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL Q +  I+E L  E+E F +TLDRG    +   S   K  +  L+G   ++LYDT G 
Sbjct: 366 ELGQKQQDIKEILDEEEEAFARTLDRGEKQFEKYASMAIKAGENKLSGSDVWRLYDTFGF 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P D+ + +   RG+  ID    + A E+ R  ++A                +KE      
Sbjct: 426 PEDLTKLMAEERGIT-IDEAEVSVAREKAREASKA----------------VKE--SVQT 466

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEV 513
           F   D+ R S+   E +          L   ++S V  I    + +   +E      + +
Sbjct: 467 FAKLDVHRISELENELKVTRTDSEAKYLKGDITSKVYLIYTGKDFLKSSKEIPPKTPLGL 526

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE+GGQ+ DTG  + DG+   ++ D Q+   G  +H+  +E G L    S++
Sbjct: 527 ILDKTNFYAESGGQIADTGRIVIDGVAEFKVLDTQEFG-GYVLHNGYLEYGELTAGDSVI 585

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +T  EL
Sbjct: 586 CEYDELRRQPIRNNHTGTHILNHSLREVLGDDINQKGSLVDNEKLRFDFSHKTGVTVPEL 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           K IED  N  I QN    T+ ++ + A    G  A+ G  Y + VRVVS+  E       
Sbjct: 646 KKIEDLSNAYIRQNCKTFTKDVDLDLAKQIEGVRAVFGETYPNPVRVVSIGIEVDMLLEN 705

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSH 734
               +    S   CGGTHV  TG +  + IV ES I  GIRRI A TG      QR  + 
Sbjct: 706 PKNPEWRKVSVEFCGGTHVDQTGIMKDMIIVEESGIAKGIRRIVAYTGDAAHQVQRLAAD 765

Query: 735 LMGQDEKLKSLA------SFLKVSQGN----VVGRV--EEIWEEYRKLQ----------- 771
              + ++L+SL       + +K +Q +    V+  V  +E+   + K+Q           
Sbjct: 766 FSKRIDELESLPFGTEKEAAIKTTQVDLEQLVISSVTKDELRTRFTKIQKAVVEEQKKKQ 825

Query: 772 LIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
              +K+ L    E     + A+   F+  +    ++K +  +M+  + K +   + + G 
Sbjct: 826 KAESKKALDTVAEHFKKPEKAESKVFIGQLPISANAKAVSEIMNFYKSKDKEKSVYVFGG 885

Query: 831 SKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           SKE+ A V  + V T        A   A   ++V+GG  GG  P   Q  G      +QA
Sbjct: 886 SKEEGAVVHGVYVGTALASQGITAEQWANAVSEVIGGKSGGKEP-TRQGQGTKPENLEQA 944

Query: 889 IAGVASFL 896
           +A    FL
Sbjct: 945 VAEAEKFL 952


>gi|154321327|ref|XP_001559979.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10]
 gi|150852076|gb|EDN27268.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10]
          Length = 952

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 329/981 (33%), Positives = 486/981 (49%), Gaps = 152/981 (15%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL FF+KN H ++PSSS++P NDPTL+FTN+GM  FK IF G           + +
Sbjct: 15  VRKQFLSFFEKNAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLG----TVGKTDDMAQ 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             RA     DLD+VG+ + HHTFFEMLGN+SFG YFK  AI +AW+LLTK + LD  RLY
Sbjct: 71  LKRAVDTQKDLDDVGKDSYHHTFFEMLGNWSFGDYFKADAIGMAWELLTKVYGLDSDRLY 130

Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++         D EA  LW K +G+  D I+     DNFW M ETGPCGPCSEI +D
Sbjct: 131 VTYFEGDAENNVPADTEAKNLWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCSEIHYD 189

Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +   I GG   +   +++    +EIWN+VF+QF++Q  +    LP   IDTGMG ER+ +
Sbjct: 190 R---IGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERLVS 246

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRSSSFLI 286
           VLQ+K++NYD D+F  L    ++VT       KY  ++       +RV+ DH+R  +F I
Sbjct: 247 VLQDKSSNYDTDVFSPLFAKIQEVTNARPYTDKYGKDDTDGIDTAYRVVADHIRLLTFAI 306

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344
           +DG +P NEGRGYV+RR++RR   YAR     E       +LPAL  +MG  +PE+++ +
Sbjct: 307 SDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVKKQ 366

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQ 402
             ++E L  E+E F +TLDRG  + +   +   K     L+G   ++LYDT G P D+ +
Sbjct: 367 QDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDLTK 426

Query: 403 DILCARGL---AGIDIISFNQALEEQRS-RARAHSLG------------LG-SGTTEKIW 445
            +   RGL    G   I+  +A E  +S +  AH+              +G     +   
Sbjct: 427 IMAEERGLETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQIAELDNMGIPRPNDDAK 486

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
           FS  +  G  Q I YD   G  F+K    +   KP                         
Sbjct: 487 FSKGDSTGKIQLI-YD---GKNFLKSTADLPNDKP------------------------- 517

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGI 564
                  ++ D+T FYAE GGQ+ DTG  I DG+   ++ D Q    G  VH+  ++ G 
Sbjct: 518 -----FGILLDKTNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYG-GYIVHNGYMDYGD 571

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
            +    ++   D   R+ +  NH+ TH+L+HAL   LG  ++Q GS +  + LRFD +H 
Sbjct: 572 FKAGDEVICEYDELRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHK 631

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY----------- 672
             +T  ELK +ED+ N  I QN  + ++ ++ + A    G  A+ G  Y           
Sbjct: 632 AQVTLPELKKVEDSANSYIKQNCKIYSKDVDLDIAKGIEGVRAVFGETYPNPVRVVSVGV 691

Query: 673 ----------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                     N   R VSVE+          CGGTHV  TG I  L IV ES I  GIRR
Sbjct: 692 EVDVLLAEPKNPEWRKVSVEF----------CGGTHVDQTGIIKDLVIVEESGIAKGIRR 741

Query: 723 IEAITG------QR-------------ARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-- 761
           I A TG      QR             A  H + +++++KS  + L     +V+ + +  
Sbjct: 742 IIAYTGDAAHEVQRIAMEFGKRIAALDAMPHGVEKEQEVKSTQNDLNHLTISVLAKEDLK 801

Query: 762 --------EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSV 812
                   ++ +E +K Q   +K  L       +  K  D   +++ +    +SK +  V
Sbjct: 802 KKFTKVQKDVLDEQKKKQKAESKTALDTVTAYFADSKNKDSTAYIAQLPISANSKAIADV 861

Query: 813 MDALQKKIQSGIIMLVGISKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           M+  + K +   + L G S  + A V  + V T+      +A   A   ++V+GG  GG 
Sbjct: 862 MNHFKSKAKDKTVYLFGGSASEGAVVHGVYVGTDAASKGVSAEQWAAAVSEVVGGRSGGK 921

Query: 871 RPHMAQSG-GPNGNKADQAIA 890
            P   ++G G N +K + A+A
Sbjct: 922 EP--TRTGQGTNPDKIEDAVA 940


>gi|302670582|ref|YP_003830542.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316]
 gi|302395055|gb|ADL33960.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316]
          Length = 884

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 311/914 (34%), Positives = 481/914 (52%), Gaps = 67/914 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  + +F++  GH    + SL+      +MF  +GM P      G++ P+   +  VQ 
Sbjct: 9   LREAWKQFYKDRGHVDCGAVSLVSDGSTGVMFNVAGMQPLMPYLLGKKHPMGTRLCNVQG 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND+D+VG  + H TFFEM+G++S G YFK+   Q +++LLT+ F  D   L 
Sbjct: 69  CVRT----NDIDSVGDKS-HGTFFEMMGSWSLGDYFKKERCQWSFELLTQLFGFDADHLA 123

Query: 127 ITVYDEDEEAFK-----LWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
            TV+  DE A +      ++  SG   + I  +   DN+W + E GPCGP SE+F+  D 
Sbjct: 124 ATVFAGDENAPRDEEGAKYRIESGFKPENIYYLPAEDNWWGL-EYGPCGPDSEMFYVKDM 182

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +C P   PG      +Y EI N VFMQ+E+ +      L + ++DTG GLER+   L  
Sbjct: 183 PDCGPNCGPGC--HCGKYTEIGNDVFMQYEKHHDGHLTPLTQKNVDTGWGLERILAFLNG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIAD--GILPANE 295
             + Y IDL   +I   E+ +G+KYE +       R++ DH R+S  LI D   +LP+N 
Sbjct: 241 VDDVYKIDLHAPVIAYIEKESGLKYESDEKTTRSMRILADHTRTSVMLIGDEAKLLPSNT 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           G GY+LRR++RRA+ +AR LG  +  ++ +      E   +Y  L + +  +   L  E 
Sbjct: 301 GAGYILRRLIRRAVRHARTLGLNKDQILGVATIYIDEYSESYENLAKNRKFVLTELEREI 360

Query: 356 ERFGKTLDRGLVLLDGVL---SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            RF  TL+ G+     +L   S  GK EI  G  AF LYDT G P+++  ++    G   
Sbjct: 361 TRFESTLENGMKEFRKILDKTSAAGKKEI-EGKDAFFLYDTFGFPVELTVELADEEGFT- 418

Query: 413 IDIISFNQALEEQRSRARAH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +D   F  ++EEQ+ +AR +   S  L +GT   ++ +L E   AT+F+GY+        
Sbjct: 419 VDEEGFKASMEEQKQKARENQNFSANLSTGTG--LFDNLDESV-ATEFLGYE-------- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
               K+ C              V  I     +V E   GQ+  ++ D+T FY   GGQ+G
Sbjct: 468 ----KLEC-----------DGTVAVIAGADALVTELTEGQQGTIITDKTTFYGTMGGQVG 512

Query: 530 DTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D G  +G +G + ++T+  K A G   H   V  G  +    + L++D +NR +   NHS
Sbjct: 513 DIGEILGSNGAKFEVTEAVKVAGGRTAHVGKVVSGSFKVSDKVTLSVDAENRAKTCRNHS 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG  V Q GS   PD  RFD ++ + +T+ E+K +ED VN  I + LP
Sbjct: 573 ATHLLQKALQMVLGDGVEQAGSYQDPDKTRFDFSYHQAMTADEIKKVEDIVNSKILEALP 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT+ M+ EDA  +GA AL G KY + VRVV++     G  S  LCGGTHV++T  I L 
Sbjct: 633 VVTKEMSIEDAKKTGAMALFGEKYGETVRVVNM-----GDFSIELCGGTHVANTSHIGLF 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES + AG+RRIEA+TG  AR++    +  L   A  LK +  ++V  ++++ EE +
Sbjct: 688 KILSESGVAAGVRRIEALTGDNARAYYKNVEANLGEAAKTLKTTPADLVDHIKKLQEELK 747

Query: 769 KLQLIH---AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+  +     ++ Q  + D+     +I  V  ++  +  VD   L+ + D ++ K+  G
Sbjct: 748 NLRSENESLKSKEAQAALGDVMDQVLEIKGVKLLATSVKGVDMNGLRDLGDQMKTKLGEG 807

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L+  +  K   V +     +    +A +L + ++ KV   GGGGGRP+MAQ+GG N 
Sbjct: 808 VVVLISEADGKVNLVTMATDGAMAKGAHAGNLVKAIAPKVG--GGGGGRPNMAQAGGKNP 865

Query: 883 NKADQAIAGVASFL 896
                A+A   + L
Sbjct: 866 AGIQDALAEAKTVL 879


>gi|297284439|ref|XP_002808351.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA synthetase,
           cytoplasmic-like [Macaca mulatta]
          Length = 967

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 297/808 (36%), Positives = 434/808 (53%), Gaps = 87/808 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-----LLGYTEPLMMHLLPALCTE 332
           H R+ +  +ADG  P N GRG++LR   R A  + +     + G+ +PL+  LLP LC  
Sbjct: 301 HARTITVALADGGRPDNTGRGFLLREPPRPARRFFKRGXGIVFGFIQPLI--LLP-LC-- 355

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
            G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYD
Sbjct: 356 QGDAFPELKRDPDMVKDIVNEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYD 415

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y
Sbjct: 416 TYGFPVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---Y 467

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT------NGVSSIVKAIVQQGEIVEEAV 506
              +       RG +   +  K       +D +      N V++++ A+ ++   VEE  
Sbjct: 468 AIEELRA----RGLEVTDDSPKYNYH---LDFSGSYVFENTVATVM-ALRREKMFVEEVS 519

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIV 560
           +GQ+  VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H   
Sbjct: 520 TGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGT 577

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD
Sbjct: 578 IYGDLKVGDQVRLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFD 636

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
            T    +++ ++K  E+  N++I    PV T+      A A  G  A+    Y D VRVV
Sbjct: 637 FTAKGAMSTQQIKKAEEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVV 696

Query: 680 SV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+     E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG
Sbjct: 697 SIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTG 756

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV 756
             A+  L     K +SL   L V +  V
Sbjct: 757 AEAQKAL----RKAESLKKSLSVMEAKV 780


>gi|147677395|ref|YP_001211610.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146273492|dbj|BAF59241.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 537

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/555 (41%), Positives = 349/555 (62%), Gaps = 38/555 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK  FTG  KP Y  VTT 
Sbjct: 4   NEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRVTTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R      D+++VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L   +
Sbjct: 64  QKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLPADK 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+I+++ +D+EAF++W K  G+ A +I+R+  + NFW +   GPCGPCSEI+ D G    
Sbjct: 120 LWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGAERG 178

Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P      + +R++EIWNLVF+QF +  +     L    IDTG GLER+A+V+Q    
Sbjct: 179 CGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQGVPT 238

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DLF+ ++  +  + G+KY  +G   V  +VI DH R+ +F +ADG LP+NEGRGYV
Sbjct: 239 NFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ + RLLG  +P +  +  A+  +MG  YPEL+  +  +   +R E+ERFG+
Sbjct: 299 IRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEERFGE 358

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL +G  +L+ +++   +    +++G+ AF+LYDT+G PL++ Q++   +GL  +D   F
Sbjct: 359 TLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDTDGF 417

Query: 419 NQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            +A+EEQR RAR+        SG  + ++  ++E+ G T F+GYD L             
Sbjct: 418 GRAMEEQRQRARSARQETDYISG-RDAMFKKMREEVGETVFVGYDALE------------ 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +  V  IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G    
Sbjct: 465 -----------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKVTA 513

Query: 537 DGIRLQITDVQKKAE 551
             + ++I +V K  E
Sbjct: 514 ADLEVEIHEVTKPVE 528


>gi|198437569|ref|XP_002125465.1| PREDICTED: similar to alanyl-tRNA synthetase [Ciona intestinalis]
          Length = 967

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 332/981 (33%), Positives = 494/981 (50%), Gaps = 110/981 (11%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
           N   +R  FL FFQ K  H  + SSS IP +DPTL+F N+GM  FK+IF G   P     
Sbjct: 6   NSKQLRQMFLSFFQEKYAHTYIHSSSTIPLDDPTLLFANAGMNQFKSIFLGTISPADPLS 65

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             + V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK+ AI  AW+LLT+
Sbjct: 66  KCKRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGCWSFGDYFKKDAINWAWELLTE 125

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              + + RLY T ++         D E   LW  +  L AD I+     DNFW M + GP
Sbjct: 126 VLKIPKDRLYATYFEGSEEYNVPVDTEVQNLW--LQHLPADHILPGNMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPC+EI FD+     GG   +   + +    +E+WNLVFMQF ++   +  +L K  +D
Sbjct: 184 CGPCTEIHFDR----IGGRNAAHLVNMDDPEVLEVWNLVFMQFNREKDGKLKLLAKQHVD 239

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIV 276
           TGMGLER+ +V+Q K +NYD D+F  L +A +  TG + Y+G    +++    + +RV+ 
Sbjct: 240 TGMGLERLVSVIQGKLSNYDTDMFTPLFKAIQLGTGAREYQGKVGKDDVDGVDMAYRVLA 299

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +  ++DG  P N GRGYVLRRI+RRA  +A   L         L+  +   +G 
Sbjct: 300 DHIRTLTIALSDGGRPDNVGRGYVLRRILRRATRFAVEKLNAKPRFFSSLVHVVVDILGE 359

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTH 394
           A+PE+I+   ++ + +  E+E+F KTL+RG  +L+  +  L  D ++  G+ A+ LYDT+
Sbjct: 360 AFPEIIRDPQMVIDIIDEEEEQFLKTLNRGRKILNQKIKSLDADAKVFPGETAWLLYDTY 419

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P D+ + +    GL  +D  SF +A    +++AR  S G      + I   +   +  
Sbjct: 420 GFPFDLTEIMAEESGLT-VDCESFEKA----KAQARITSKGFAQDVADTICLDV---HML 471

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG------VSSIVKAIVQQGEIVEEAVSG 508
           T       L+  KF   D     Q    D  NG       + +VKAI+Q    V    SG
Sbjct: 472 TD------LKEKKFPPTDDSFKYQYSSND--NGEYSFPACTGVVKAILQNKTFVTSVSSG 523

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRT 567
            +  ++ D+T FYAE GGQL D G          + T    + +G +V H     G L  
Sbjct: 524 AECGILLDKTCFYAEQGGQLFDLGYFKKQEDEFTEFTVKNCQVQGGYVLHVGTVAGTLEV 583

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             S+ L ID Q R+ L  NHS TH+L+  L  +LG    Q GS + P+ LRFD T  K +
Sbjct: 584 GDSVELFIDEQRRQSLMKNHSCTHILNFGLRCVLG-EADQRGSLVAPNRLRFDFTAKKAM 642

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-- 684
           TS ++K  ED  N I+ ++  +  + +  + A A  G  A+    Y D VRV+SV     
Sbjct: 643 TSQQVKETEDVCNQIVNKDEVIYAKPVPLDQAKAIHGLRAIFDETYPDPVRVLSVGVSVD 702

Query: 685 --------DGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---- 731
                   D  +++S  LCGGTH+  +G      I+SE +I  G+RRI A+TGQ A    
Sbjct: 703 SLVADPNFDAAMNTSVELCGGTHLLRSGHADKFIIISEEAISKGVRRIVAVTGQEALKAE 762

Query: 732 -RSHLMGQD-EKLKS------------LASFLK--------VSQGNVV-GRVEEI--WEE 766
            +++L+ +  E +KS              +F K        VSQ ++   R EE+  +  
Sbjct: 763 RKANLLAKSFETIKSEVEKGLVNNKENYKTFSKKCTDFIELVSQASISQWRREEMRGFAS 822

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIA-----DVNFMSHIISEV----DSKELKSVMDALQ 817
             K ++    R ++ N   L+  +       D N  + +++E+    ++K L   +   +
Sbjct: 823 SLKKKVDDVDRVMKENATKLALAQTKESIQQDPN-ATFVVTELKTNGNAKSLNEALKIYK 881

Query: 818 KKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +     +ML  I KE  K   L  V     D+    +    S      G GGG+   AQ
Sbjct: 882 SESPDTSVMLFSIDKEANKIVCLSQVPASANDKGLTANGWVQSIATTLNGKGGGKSTSAQ 941

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           + G N +  ++AI     F K
Sbjct: 942 AVGRNPDGLNEAIQLAKEFAK 962


>gi|289444091|ref|ZP_06433835.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium
           tuberculosis T46]
 gi|289417010|gb|EFD14250.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium
           tuberculosis T46]
          Length = 877

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 319/902 (35%), Positives = 478/902 (52%), Gaps = 66/902 (7%)

Query: 25  SSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTN 84
           SS+   C   T  +++S +  +      +  P Y   T++Q        +      G T 
Sbjct: 1   SSTTPTCCSSTPGWSSSCLSSWD-----KSTPPYPTATSIQPV----HPYPRYRRGGITT 51

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKL 139
           RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +L
Sbjct: 52  RHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRL 111

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYI 198
           W++++GL A++I R    DN+WSM   GPCGP SEI++D+G E  P G P  SE+  RY+
Sbjct: 112 WQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYL 169

Query: 199 EIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           E+WNLVFMQ E      +++ Q    LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +
Sbjct: 170 EVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPV 229

Query: 253 IQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           I    +V    Y+ GN  + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +
Sbjct: 230 IDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVI 289

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
             A+LLG    ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L 
Sbjct: 290 RSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLF 349

Query: 370 DGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           + V S   K    +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR 
Sbjct: 350 EEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRR 408

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           RA+A +        +   +      GAT+F G+D LR S+       V  ++ P+ + +G
Sbjct: 409 RAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHG 466

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQI 543
           V+               A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +
Sbjct: 467 VAG-------------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAV 513

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG 
Sbjct: 514 TDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGP 573

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A G
Sbjct: 574 NAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMG 633

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G  Y D VRVV    E GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+
Sbjct: 634 AIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRV 689

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---- 779
           EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++    
Sbjct: 690 EAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASAR 749

Query: 780 -QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                      +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +
Sbjct: 750 AAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQT 809

Query: 838 VLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           V   V      +DL  R N  DL +  A  +  G GGG+  +AQ  G N    D A+  V
Sbjct: 810 VPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAV 866

Query: 893 AS 894
            S
Sbjct: 867 RS 868


>gi|195155623|ref|XP_002018701.1| GL25810 [Drosophila persimilis]
 gi|194114854|gb|EDW36897.1| GL25810 [Drosophila persimilis]
          Length = 966

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 319/969 (32%), Positives = 488/969 (50%), Gaps = 97/969 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L 
Sbjct: 69  CNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTNRLHLP 128

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +  DE        E  +LW  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L +A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG   I+ GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLE-IDMAGYEAA----KQNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +   +   K   + + ++     +     S IV A+  + + V E  +GQK  +V D+T 
Sbjct: 477 VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIV-ALRFENQFVNEISNGQKAGIVLDKTN 535

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L+    L L ID 
Sbjct: 536 FYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDE 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E 
Sbjct: 595 ERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAKTEQ 654

Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EY 683
              D++ +N+P+  +    + A+A    G  ++    Y D VRV+S            + 
Sbjct: 655 LTKDMVYKNVPIYAK--ESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDA 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQ 738
           E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A     +S    Q
Sbjct: 713 EAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQ 772

Query: 739 D-EKLKSLASFLKVSQGNV--VGRVEEIWEEYRKLQLIHAKR----------KLQLNVED 785
           +  KLK+     K  + +   V  + E+ E+     + + K+          K  L+ ++
Sbjct: 773 EIVKLKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDDKE 832

Query: 786 LSCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI----IMLV 828
            S      VN +               ++ ++++      +DA  K++++ +     M  
Sbjct: 833 RSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAMFF 892

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N ++ +
Sbjct: 893 SVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDRVE 951

Query: 887 QAIAGVASF 895
           + I     F
Sbjct: 952 EIIQLATKF 960


>gi|195438477|ref|XP_002067163.1| GK24844 [Drosophila willistoni]
 gi|194163248|gb|EDW78149.1| GK24844 [Drosophila willistoni]
          Length = 967

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 316/968 (32%), Positives = 481/968 (49%), Gaps = 94/968 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRDAYLGFFKEKKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLKLP 128

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +  DE        E  +LW  + G+  + ++  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQLWLDL-GIKPEHVLPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   +++    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF+ L +  +  TG   Y+G    +        +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFQPLFEHIQSSTGAPAYQGRVGADDSDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P M   L     E +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLKAKPGMFASLVNTVVELLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400
           +    I + +  E+++F KTL RG  LL+  +  LG D+ I+ GDVA++LYDT+G P+D+
Sbjct: 365 KDPQHIIDIINEEEQQFLKTLTRGRNLLNRTIEKLGADQKIIPGDVAWRLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   + L  ID+  +  A    +  +   S G GS   E+I   +       Q  G 
Sbjct: 425 TQLMAEEKSLE-IDMAGYEAA----KQNSYILSQGKGSSKIEEINLDV-HAISQLQDQGV 478

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                S   K + +   +  P +     S I+ AI  + + V+   +GQK  +V D T F
Sbjct: 479 PTTNDSFKYKYEAESEERDSPYNYETCSSKIL-AIRFENQFVQSISNGQKAGIVLDNTNF 537

Query: 521 YAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     L L ID  
Sbjct: 538 YAESGGQIYDQGALVKANDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDDLQLHIDVT 596

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E+ 
Sbjct: 597 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKGAMTIEQVAKTEEL 656

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVS----VEY-------E 684
              ++ +N+P+  +    + A+A    G  ++    Y D VRV+S    VE        E
Sbjct: 657 TRQMVYKNVPIYAK--ESKLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLEEQPNGE 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   +   ++  + 
Sbjct: 715 AGDNTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEAIKAIKKSEQFEQE 774

Query: 745 LASFLKVSQGNVVGR--------VEEIWEEYRKLQLIHAKR----------KLQLNVEDL 786
           + +     + +  G+        + E+ E+     + + K+          K  L+ ++ 
Sbjct: 775 IVTLKATIEADTTGKDSKQHVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDDKER 834

Query: 787 SCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI----IMLVG 829
           +      V  +               ++ ++++      +DA  K+++S +     M   
Sbjct: 835 ALRAAVSVTVVERAKALCEENPTATVLVQQLEAYNNTKALDAALKQVRSQLPDTAAMFFS 894

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  ++ L GG GGG+P  AQ+ G N    D+
Sbjct: 895 VDVDSKKIFCLSSVPKSAVEKGLKANEWVQHLSQSL-GGKGGGKPESAQASGTNYESVDE 953

Query: 888 AIAGVASF 895
            +     F
Sbjct: 954 ILQLATKF 961


>gi|294053724|ref|YP_003547382.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293613057|gb|ADE53212.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 941

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 331/989 (33%), Positives = 493/989 (49%), Gaps = 161/989 (16%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VT 62
           S IR +FL+FF+   H  +PS+SL+P   P L+FTN+GM  F   F G EK  +      
Sbjct: 8   SEIRQSFLDFFKSKQHTTVPSASLMP-QSPGLLFTNAGMNQFVPYFLGTEKAPFDPPRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI+ +W+L+ + + +  
Sbjct: 67  DTQKCIRAGGKHNDLEDVGYDTYHHTFFEMLGNWSFGNYFKQEAIEWSWELIVETWGVPA 126

Query: 123 RRLYITVYDE--------DEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMAETGPCG 170
            RLY TVY          D+EA+ +W  +   +GL     II     DNFW M ETGPCG
Sbjct: 127 NRLYATVYAPSEGDPSAFDQEAYDIWSVLFEKAGLDPKVHIINGNVKDNFWMMGETGPCG 186

Query: 171 PCSEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           PCSE+  D       QG+ +       + + +  IEIWNLVF+Q+  +       LP   
Sbjct: 187 PCSELHVDLTPKGDSQGKLV-------NMDSDLCIEIWNLVFIQYNAEADGSFRDLPAKH 239

Query: 224 IDTGMGLERMATVLQ---------EKTNNYDIDLFKHLIQASEQVTGMKY---------- 264
           +DTGMG ER  +++Q         EK  NY  D+F+ + +  EQ++G  Y          
Sbjct: 240 VDTGMGFERACSLIQNTKGFTDFSEKPTNYATDVFQPIFRTLEQLSGKTYKDIYPEAADC 299

Query: 265 -------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                  E    +  RVI DH+R+ SF +ADGIL  N GR YVLRRI+RRA+ Y R LG+
Sbjct: 300 DKSKLSQEMKEAIAFRVIADHIRTLSFSLADGILLGNTGRNYVLRRILRRAVRYGRTLGF 359

Query: 318 T--EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           +  E  +  L+  L  E GS +PEL +    ++E L+ E+  F +TLDRGL + +   + 
Sbjct: 360 SSGETFLPKLVDTLVEEFGSVFPELKERAKAVKENLQREEASFNETLDRGLAMFEDEAAK 419

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                 L+G+ AFKLYDT+G P+D+ Q +LCA     +D+ +F + +E QR RARA    
Sbjct: 420 TKGS--LDGEFAFKLYDTYGFPIDLTQ-LLCAERGIEVDMETFEKHMEAQRERARAAR-- 474

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
               T + +  +      +T+F G++         ED                       
Sbjct: 475 ----TQQLVRAADIATEASTEFTGFE---------EDEST-------------------- 501

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
               +++E       + V+ D+TPFY E GGQLGD G    +G    +T VQ+ +     
Sbjct: 502 ---AKVLELHTQDDALLVITDRTPFYVEMGGQLGDQGTLTVNGTTYPVTAVQQLSAA--R 556

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
            H++     ++    + L +D   RR +  +H+ATHLLH AL  ++ +  +Q GS ++  
Sbjct: 557 AHSLPTDAAVKVGDEVTLALDPTRRRPIEGHHTATHLLHWALHEVVSTDAAQQGSMVSRT 616

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV------TRIMNREDAIASGAAALLG 669
            LRFD  +S  ++  +L +IE  VN  I    PV       T + +R+D          G
Sbjct: 617 RLRFDF-NSSALSQDQLDAIETKVNACIEAGDPVSWKEVPHTDVKDRKD-----VQQFFG 670

Query: 670 TKYNDRVRVVSV----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            KY D VRVV +    E  DG  +S  LCGGTHV +T +I L  I SE +I +GIRRIEA
Sbjct: 671 DKYGDLVRVVQIGGQPEQLDG--YSMELCGGTHVRNTKDIGLFKIKSEGAIASGIRRIEA 728

Query: 726 ITGQRA------------------RSHLMGQDEKLKSL-ASFLKVSQGN--VVGRVEEIW 764
           + G  A                  R+ L G ++KL++L A  +K  Q    ++G + E  
Sbjct: 729 VCGTAAYDWTRSVVEKANIEREELRTKLEGINQKLEALGADSIKYPQFPHIMIGMLAEGN 788

Query: 765 EEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            E R    K  L H +   +  VE     K A     + + + + +++  S    L+ + 
Sbjct: 789 FEQRNKVFKDTLAHVQGLKEATVEADKALKKAQAAGAAKMANAILAEQDLSGNLVLKAEG 848

Query: 821 QSGII--MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK--------------VLG 864
            + ++  ++ G+ +++ A     + +D  +R +   L   +AK               + 
Sbjct: 849 PAALLQELINGLKQQQFAGAAFFIVDD-GERLHLGALCGETAKGNGLMAGKLIQQLAPIA 907

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           GG GGG+P MA+   P  +KAD  +AG A
Sbjct: 908 GGKGGGKPDMARGAAPERDKAD-TLAGEA 935


>gi|50545890|ref|XP_500483.1| YALI0B04180p [Yarrowia lipolytica]
 gi|49646349|emb|CAG82710.1| YALI0B04180p [Yarrowia lipolytica]
          Length = 960

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 314/965 (32%), Positives = 486/965 (50%), Gaps = 103/965 (10%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            + +R TFL++F +K  H  +PSSS+IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  ATKVRKTFLDYFGEKRAHSFVPSSSVIPYDDPTLLFANAGMNQYKPIFLGTCDPSSPLSK 69

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK  A   AW+LLT+ 
Sbjct: 70  LNRAANSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKAEACAWAWELLTQV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY++ +  D+        EA ++W  + G++ D I+   + DNFW M + GPC
Sbjct: 130 YGLDADRLYVSYFGGDDKLGLQPDLEAKQIWMDL-GVAEDHILPGDSADNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+   I GG       + +    +EIWN+VF+Q+ ++  +    LP   IDT
Sbjct: 189 GPCSEIHYDR---IGGGRNARDLVNMDDPNVLEIWNIVFIQYNREADKSLKPLPAKHIDT 245

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277
           GMG ER+ +VLQ+K++NYD D+F  +    +++TG + Y G       + I   +RV+ D
Sbjct: 246 GMGFERLVSVLQDKSSNYDTDVFTPIFAKIQELTGARDYAGKFGAEDADGIDTAYRVVAD 305

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334
           H+R+ +F +ADG +P N+GRGYVLRRI+RR   + R   +  P+      L P L  ++ 
Sbjct: 306 HVRTLTFALADGGVPNNDGRGYVLRRILRRGARFVRK-KFDVPIGSFFSQLAPTLIEQVN 364

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYD 392
             +PEL +    I E L  E++ F +TLDRG  L +     +      +L G   ++LYD
Sbjct: 365 EIFPELSKRTEDIFEILNDEEQSFSRTLDRGEKLFEQYAADAKANSKTVLAGKDVWRLYD 424

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+ + +    GL  ID  +F++A +E    ++                  K+  
Sbjct: 425 TYGFPVDLTRIMAEEAGL-DIDEAAFDKAKQESLEASKGG----------------KKTA 467

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV--SGQK 510
           G  Q +  D+   ++  K D             + +S      +  G    ++V  S  +
Sbjct: 468 GGVQLVKLDVHALAELEKNDAVPKTDDQAKFTESNLSDAKVVAIYNGTGFVDSVDESAGQ 527

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           V ++ D+T  YAE+GGQ  DTG  + DG     + +VQ  A G  +H      G L+   
Sbjct: 528 VGLLLDKTCMYAESGGQEYDTGKIVIDGQTEFDVNNVQVYA-GYVLHTGNFNYGSLKIGD 586

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + +  D   R  L  NH+ TH+L++AL   LG  + Q GS +  + LRFD +H   +T 
Sbjct: 587 VVNVGFDTARRTPLKNNHTGTHVLNYALKETLGDTIDQKGSLVASEKLRFDFSHKAGLTP 646

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR----------- 677
           AE+  +ED  N  I +NL V  + ++   A   +G  A+ G  Y D VR           
Sbjct: 647 AEVAKVEDISNAYITKNLAVYAKSVDLTTAKKINGVRAVFGETYPDPVRVVSVGVPVEDL 706

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS--HL 735
           + + +      +S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TG+ A     L
Sbjct: 707 IANPDDAKWAEYSVEFCGGTHVGKTGEIKHLVIIEESGIAKGIRRIVAVTGKEAADVQKL 766

Query: 736 MGQ-DEKLKSLAS----FLKVSQGNVVGRVE------------EIWEEYRKLQ-LIHAKR 777
             + DE+L  LA+      K      +G VE             + E++ K+Q  I    
Sbjct: 767 AAEFDERLDKLAAQPLGADKEQAAKAIG-VELKKLSVSTTSKLALQEKFNKIQKTITDGI 825

Query: 778 KLQLNVEDLSCHKIADVNF-----MSHIISEV-----DSKELKSVMDALQKKIQ-SGIIM 826
           K +L  E  +   +    F      +++++ V     +SK L   ++ ++ K+    + +
Sbjct: 826 KAKLKAESKASTDLVSSYFEKNPEATYLVAHVPDISANSKALSETINHVKSKLPGKSVYL 885

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             G   E K +    + E + ++   A  +  ++A ++G G  GG+    Q  G N +K 
Sbjct: 886 FAGSPAEGKVAHACFIDESVSNKGLTAQQMGAIAAGLVG-GRSGGKGPTIQGSGDNADKI 944

Query: 886 DQAIA 890
             A++
Sbjct: 945 ADAVS 949


>gi|195033960|ref|XP_001988798.1| GH11356 [Drosophila grimshawi]
 gi|193904798|gb|EDW03665.1| GH11356 [Drosophila grimshawi]
          Length = 967

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 315/964 (32%), Positives = 484/964 (50%), Gaps = 98/964 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---VYQAVTT 63
           +R  +L+FF++  H  + SSS IP +DPTL+FTN+GM  FK IF G   P   + + V T
Sbjct: 9   VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTADPNSEMSKWVRT 68

Query: 64  V--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           V  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L 
Sbjct: 69  VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLRLP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +          D E  + W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDAASGLQPDLECKQFWMDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   +++    +EIWNLVF+QF +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NQDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVSTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400
           +    I + +  E+ +F KTL RG  LL+  +  LG  +  + GDVA++LYDT+G P+D+
Sbjct: 365 KDPQHIMDIINEEELQFLKTLTRGRNLLNRTIEKLGTSQTTIPGDVAWRLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   + L  ID+  +  A    +  +   S G G+   ++I   +   +  ++    
Sbjct: 425 TQLMAEEKSLQ-IDMAGYEAA----KQNSYILSQGKGASKIDEITLDV---HAISELQEK 476

Query: 461 DLLRGSKFMKEDRKVLC--QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
            L       K + + +   +    + +   S IV A+  + + V+E  SGQK  +V D+T
Sbjct: 477 GLPSTDDSFKYNYEAVSVERDAAYNFSECTSKIV-ALRFENKFVQEISSGQKAGIVLDKT 535

Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     L L ID
Sbjct: 536 NFYAESGGQIYDQGVLVKLNDEANEFLVDRVYNRGGYILHIGVVE-GNLAVGDELQLHID 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E
Sbjct: 595 VERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNCKAAMTIDQVARTE 654

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------E 682
               D++ QN+P+  +    + A+A    G  ++    Y D VRV+S            +
Sbjct: 655 KLTRDMVYQNMPIYAK--ESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDRLESQPD 712

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---D 739
            E G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   +      +
Sbjct: 713 AETGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFE 772

Query: 740 EKLKSLASFLKVSQGN-----VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS------- 787
           +++  L + ++  Q        V  + E+ E+     + H K+    N+  L        
Sbjct: 773 QEISQLQATIEADQSGKESKMYVKLIVELTEQISHATIPHVKKDEMRNLLKLLKKSLDDK 832

Query: 788 -------------------CHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIML 827
                              C        + H +    ++K L + +  ++ ++     M 
Sbjct: 833 ERALRAAVSVTVVERTKALCEAEPQAKVLVHQLEAYNNTKALDAALKQVRLQLPEAAAMF 892

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           V +  + KK   L  V +  +++   A +  +  + +L GG GGG+   AQ+ G N  + 
Sbjct: 893 VSVDADSKKIFCLCSVPKAAVEKGLKANEWVQHVSSIL-GGKGGGKAESAQASGSNFERV 951

Query: 886 DQAI 889
           D+ +
Sbjct: 952 DEIV 955


>gi|125987341|ref|XP_001357433.1| GA12250 [Drosophila pseudoobscura pseudoobscura]
 gi|54645764|gb|EAL34502.1| GA12250 [Drosophila pseudoobscura pseudoobscura]
          Length = 966

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 318/969 (32%), Positives = 488/969 (50%), Gaps = 97/969 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L FF++  H  + SSS IP +DPTL+F N+GM  +K IF G   P      +  V
Sbjct: 9   VRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQYKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L 
Sbjct: 69  CNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTNRLHLP 128

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +  DE        E  +LW  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L +A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG   I+ GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLE-IDMAGYEAA----KQNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +   +   K   + + ++     +     S IV A+  + + V E  +GQK  +V D+T 
Sbjct: 477 VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIV-ALRFENQFVNEISNGQKAGIVLDKTN 535

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L+    L L ID 
Sbjct: 536 FYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDE 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E 
Sbjct: 595 ERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAKTEQ 654

Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EY 683
              D++ +N+P+  +    + A+A    G  ++    Y D VRV+S            + 
Sbjct: 655 LTKDMVYKNVPIYAK--ESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDA 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQ 738
           E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A     +S    Q
Sbjct: 713 EAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQ 772

Query: 739 D-EKLKSLASFLKVSQGNV--VGRVEEIWEEYRKLQLIHAKR----------KLQLNVED 785
           +  KLK+     K  + +   V  + E+ E+     + + K+          K  L+ ++
Sbjct: 773 EIVKLKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDDKE 832

Query: 786 LSCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI----IMLV 828
            S      VN +               ++ ++++      +DA  K++++ +     M  
Sbjct: 833 RSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAMFF 892

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N ++ +
Sbjct: 893 SVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDRVE 951

Query: 887 QAIAGVASF 895
           + I     F
Sbjct: 952 EIIQLATKF 960


>gi|6176442|gb|AAF05593.1|AF188718_1 alanyl-tRNA synthetase [Drosophila melanogaster]
          Length = 966

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 314/970 (32%), Positives = 480/970 (49%), Gaps = 99/970 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L   S++ +    Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLSMPSKRALVPQPYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K   + +  +       GV +S + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      + S+        
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMPSSRCPRRSSL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV-----------E 682
             +++ +N+P    I  +E  +A      G  ++    Y D VRV+S            +
Sbjct: 656 TKEMVYKNVP----IYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHA 775
           + +         +  G+     V+EI E                E R L       L   
Sbjct: 772 QEIVRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDK 831

Query: 776 KRKLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIML 827
           +R L+  V      +   + + N  + ++ E      ++K L + +  ++ ++     M 
Sbjct: 832 ERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMF 891

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K 
Sbjct: 892 LSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKV 950

Query: 886 DQAIAGVASF 895
           D+ +   + F
Sbjct: 951 DEIVQLASKF 960


>gi|218662503|ref|ZP_03518433.1| alanyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 478

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/497 (46%), Positives = 330/497 (66%), Gaps = 39/497 (7%)

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
           ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F  A++ Q++ AR+H  G G  
Sbjct: 1   DMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQKAEARSHWAGSGEQ 59

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
            TE IWF LKEK+GAT+F+GYD                       T    ++V+AIV+ G
Sbjct: 60  ATETIWFELKEKHGATEFLGYD-----------------------TETAEAVVQAIVKDG 96

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            +  EA +G KV++V  QTPFY E+GGQ+GDTG    D  +++I+D QK+ EG+FVH   
Sbjct: 97  AVAAEAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHGKIEISDTQKRGEGLFVHQGT 156

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G+++   ++VLT+D+  R +L  NHSATHLLH AL  +LG+HV+Q GS + P+ LRF
Sbjct: 157 VIDGVVKDGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHVAQKGSLVAPERLRF 216

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DAIA GA AL G KY D VRVV
Sbjct: 217 DVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDAIAEGAMALFGEKYGDEVRVV 276

Query: 680 SV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +       + G  +S  LCGGTHVS+TG+I L+ ++ ES++ AG+RRIEA+TG+ AR +
Sbjct: 277 GMGEGVRGAKAGKPYSIELCGGTHVSATGQIGLIRVLGESAVGAGVRRIEAVTGESAREY 336

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL------NVEDL 786
           L  QDE++K+LA+ LKV  G V+ RVE + +E RKL  +L  AKRKL +      +V+  
Sbjct: 337 LAEQDERVKALAASLKVQPGEVLSRVEAMMDERRKLEKELADAKRKLAMGGGQGGSVD-- 394

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  ++A V F+   IS VD K+LK + D  +  I SG++ LVG+S + KAS ++ VT DL
Sbjct: 395 AVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALVGVSDDGKASAVVAVTPDL 454

Query: 847 LDRFNAVDLARLSAKVL 863
           ++R++AVDL R+++  L
Sbjct: 455 VERYSAVDLVRIASAAL 471


>gi|320588479|gb|EFX00948.1| alanyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 1117

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 325/946 (34%), Positives = 494/946 (52%), Gaps = 96/946 (10%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVY---QA 60
            +R TFLE+F+K GH ++PSSS++P NDPTL+FTN+GM  FK IF G   +  P+    +A
Sbjct: 168  VRQTFLEYFEKKGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVAKADPLSSLKRA 227

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            V T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+++WDLLT  + L
Sbjct: 228  VDT-QKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMSWDLLTNVYGL 286

Query: 121  DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            D  RLY+T +        + D EA  LW  + G+  D I+     DNFW M + GPCGPC
Sbjct: 287  DPARLYVTYFEGNPAMGLEPDLEAKNLWLSV-GVPEDHILPGNMKDNFWEMGDQGPCGPC 345

Query: 173  SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            SE+ +D+   + GG   SS   ++    +E+WN VF+QF++Q  +    LP   +DTGMG
Sbjct: 346  SEVHYDK---VGGGRNASSLVNQDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMG 402

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLR 280
             ER+ + LQ+K +NY  D+F  L    ++VTG      KY  +++      +RV+ DH+R
Sbjct: 403  FERLVSALQDKISNYATDIFTPLFDRIQEVTGARPYTDKYGKDDVDGIDTAYRVVADHIR 462

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
              +F +ADG +P N+GRGYV+RR++RR + YAR     E       +LPAL  +MG  +P
Sbjct: 463  LLTFSMADGAVPNNDGRGYVVRRVLRRGVRYARKYFGAEIGSFFSQILPALVDQMGHQFP 522

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
            E+ + +  I+E L  E+E F +TLDRG    +   +   K   + L+G   ++LYDT G 
Sbjct: 523  EIAKKQKDIKEILDEEEEAFSRTLDRGERQFEKYAAATAKSGAKTLSGADVWRLYDTFGF 582

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P D+ Q +   RGL+   I +   A+  +R+R  + S+     T  K    L     A  
Sbjct: 583  PEDLTQLMAEERGLS---IDAEEVAVARERAREASKSVKEAVQTFAK----LNVHQIAEL 635

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               + ++R S   K  R  L  +  ++L    +  VK         ++  +   + ++ D
Sbjct: 636  ENEHKIVRPSSEAKYLRGDLHSR--VELIYTGTGFVK-------TTKDIPANTPLGILVD 686

Query: 517  QTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +T FYAE+GGQ+ DTG   I D    ++ DVQ+   G  VH+  +E G L +  +++   
Sbjct: 687  KTNFYAESGGQVADTGRIVIDDVAEFKVLDVQEYG-GYVVHNGYLEYGELSSGDNVICEY 745

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            +   R  +  NH+ TH+L+HAL  +LG  V+Q GS +  D LRFD +H   ++ AE+K I
Sbjct: 746  EELRRAPIRNNHTGTHVLNHALREVLGDDVNQKGSLVDQDKLRFDFSHKSAVSLAEIKKI 805

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEY 683
            E+  N  I +NL V  + ++   A    G  A+ G  Y D VR           + + + 
Sbjct: 806  EELANANIQRNLKVFYKDVDLASAREIEGVRAVFGETYPDPVRVVSVGVDVDELLRTPKK 865

Query: 684  EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSHLMG 737
             +   +S   CGGTHV  TG I  + +V ES I  GIRRI A TG      QR  +    
Sbjct: 866  AEWRGYSVEFCGGTHVEQTGLIKDVVVVEESGIAKGIRRIVAYTGDAAHRVQREATQFQE 925

Query: 738  QDEKLKSLA------SFLKVSQGNVVGRV------EEIWEEYRKLQ-------LIHAKRK 778
            + E ++ L       + +K +Q ++          EE+   + K+Q           K +
Sbjct: 926  RIEAIEKLPFGPEKETEIKAAQHDLNQLAISALAKEELRTRFAKVQKDVLDELKKRQKAE 985

Query: 779  LQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            L+  V  ++ H     N     F+ H+    ++K +  VM+  + K +   + + G S  
Sbjct: 986  LKAAVGAVTDHFAKPDNKESKVFVGHLPISANAKAISEVMNHFKTKDKERSVYVFGGSPS 1045

Query: 834  KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +     + V   L  +   A   +   + V+GG  GG  P    SG
Sbjct: 1046 EGVVHGVYVGTHLASKGVTAEQWSTAVSDVVGGKAGGKEPTRQGSG 1091


>gi|315046056|ref|XP_003172403.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342789|gb|EFR01992.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 970

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 295/801 (36%), Positives = 431/801 (53%), Gaps = 87/801 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTG+G 
Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGY 257

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L  A + +TG + Y GN            +RV+ DHLR+
Sbjct: 258 ERLVSILQNKSSNYDTDVFSPLFAAIQNITGARPYTGNFGAQDVDGIDTAYRVVADHLRT 317

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE
Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYMQVEIGSFFSKLVPALVEQMGDMFPE 377

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD-----GVLSHLGKDEILNGDVAFKLYDTH 394
           + + +  + E L  E+  F KTLDRG    +      + S  GK   L+G   ++LYDT 
Sbjct: 378 IKRKQNDVMEILDEEEVSFAKTLDRGERQFETYAQQALDSGAGK---LHGADVWRLYDTF 434

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449
           G P+D+ + +   R L  ID   F    EE R +A+  S G     ++ +  ++      
Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKAASDLLKLTVHTLSTL 489

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506
           EK G  +         +KF K                 + + +KAI    E+++   +  
Sbjct: 490 EKNGVPK-----TNDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIP 529

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
           + +++ ++ D+T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G  
Sbjct: 530 ADEQIGIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H  
Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKS 648

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684
            I+ ++L+ IE    D I QN  V ++ +    A   +G  A+ G  Y D VRVVSV  E
Sbjct: 649 AISDSDLEKIESMSTDYIRQNCAVYSQEVPLSTAREITGVRAVFGETYPDPVRVVSVGVE 708

Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              +            S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A  
Sbjct: 709 LDEILKNVKDPRWEAVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHE 768

Query: 734 HLMGQDEKLKSLASFLKVSQG 754
                 E  + L  F K+S G
Sbjct: 769 VQRVAREFGERLNRFEKMSAG 789


>gi|327538393|gb|EGF25065.1| alanyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 945

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 272/779 (34%), Positives = 405/779 (51%), Gaps = 55/779 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L FF+  G    PS  L+P  DP+++FT +GM  FK+ F G+ K  +   TT QK
Sbjct: 6   LREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRATTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+DNVGRT  HHTFFEMLGNFSFG YFKE AI  AW+ LT  K   +   R
Sbjct: 66  CLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLGIPGER 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW--SMAETGP---CGPCSEIFFDQ 179
           L +TVY +D+EAF +W    GL   +I R+  ++NFW  S    GP   CGPCSEI++  
Sbjct: 122 LTVTVYKDDDEAFGIWHDKIGLPTQRITRMDEDENFWPASAPSEGPDGVCGPCSEIYY-- 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237
                       E+G   +EIWNLVF QF +       +  LP  +IDTGMGLER A+VL
Sbjct: 180 ----------QLEDGSD-VEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLERTASVL 228

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    N+ ID    +++A+ +V G+K  YE +N    R I DH R+S F + + + P  +
Sbjct: 229 QGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENVYPGPK 288

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
               V+RR++RRA+     +   EP +  L+ A+     +AYPEL Q    + E + SE+
Sbjct: 289 DARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEAIESEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           + F  T+D G+  +  +   +  +   ++ G  A  L  T+G+P +++Q +   +     
Sbjct: 349 KAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQNFT-F 407

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+++    +     +   +G  E    +LKE    T F+GY+    +  +K  
Sbjct: 408 DWSGFREAMDKHADESDGGQRVLFQTGPLE----TLKEALRETPFVGYEQTEATAVVK-- 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             ++              ++  + + G+ V        + VV D +PFY E+GGQ+GD G
Sbjct: 462 -GIITGD--GKGKGDDGQLLSHLDRPGDAV--------LRVVLDHSPFYGESGGQVGDIG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D    ++ D Q+ A  + VHH  + RG +    +     D +NR  L+  HSATH+
Sbjct: 511 VISNDNFEFEVIDTQRHA-SLIVHHGRLIRGKINEGETCTAKFDVENRTALARAHSATHI 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LHHAL T +G H  Q GS + PD LRFD T+ K I    L  IE +V  ++++   +   
Sbjct: 570 LHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLSMVSKGDEIRWD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            ++  DA  +GA  L G KY D  R+VS+     G  S  LCGGTH+++T ++    +V 
Sbjct: 630 TVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSFEVVV 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           E S+  G RRIEA+TG+RA+ H       L  +A  L             + EE R+L+
Sbjct: 685 EESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVRRLK 743



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 6/153 (3%)

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH--KIADVNFM 797
           ++ L   L V+  +V+ R++ +  +  KL  QL       +++ +DL     K+ D   +
Sbjct: 782 VRGLTRRLNVAITDVLSRLDSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLI 841

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856
                  +   ++  +D ++KK  +   +L+  +   K  ++  ++ DL+DR   A D  
Sbjct: 842 VAETPGANPNIMRGWIDQIRKKSDTPTAVLLASAMNDKVMLVGGLSRDLVDRGLKAGDWV 901

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +AKV+GG GGG RP MAQ+GG + +K  +A+
Sbjct: 902 GAAAKVVGGSGGG-RPDMAQAGGKDASKLPEAL 933


>gi|32475431|ref|NP_868425.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|41018176|sp|Q7UFH9|SYA_RHOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|32445972|emb|CAD78703.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 945

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 273/779 (35%), Positives = 404/779 (51%), Gaps = 55/779 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L FF+  G    PS  L+P  DP+++FT +GM  FK+ F G+ K  +   TT QK
Sbjct: 6   LREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRATTCQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+DNVGRT  HHTFFEMLGNFSFG YFKE AI  AW+ LT  K   +   R
Sbjct: 66  CLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLGIPGER 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW--SMAETGP---CGPCSEIFFDQ 179
           L +TVY +D+EAF +W    GL   +I R+  ++NFW  S    GP   CGPCSEI++  
Sbjct: 122 LTVTVYKDDDEAFGIWHDKIGLPTQRISRMDEDENFWPASAPSEGPDGVCGPCSEIYY-- 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237
                       E+G   +EIWNLVF QF +       +  LP  +IDTGMGLER A+VL
Sbjct: 180 ----------QLEDGSD-VEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLERTASVL 228

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    N+ ID    +++A+ +V G+K  YE +N    R I DH R+S F + + + P  +
Sbjct: 229 QGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENVYPGPK 288

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
               V+RR++RRA+     +   EP +  L+ A+     +AYPEL Q    + E + SE+
Sbjct: 289 DARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEAIESEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           + F  T+D G+  +  +   +  +   ++ G  A  L  T+G+P +++Q +   +     
Sbjct: 349 KAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQNFT-F 407

Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F +A+++    +     +   +G  E    +LKE    T F+GY+    +  +K  
Sbjct: 408 DWSGFREAMDKHADESDGGQRVLFQTGPLE----TLKEALRETPFVGYEQTEATAVVKG- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                    I            ++   +  E+AV    + +V D +PFY E+GGQ+GD G
Sbjct: 463 --------IITGDGKGKGDDGQLLSHLDRPEDAV----LRLVLDHSPFYGESGGQVGDIG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D    ++ D Q+ A  + VHH  + RG +    +    +D +NR  L+  HSATH+
Sbjct: 511 VISNDNFEFEVIDTQRHA-SMIVHHGRLIRGKINEGETCTAKVDVENRTALARAHSATHI 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LHHAL T +G H  Q GS + PD LRFD T+ K I    L  IE +V  ++ +   +   
Sbjct: 570 LHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLGMVGKGDEIRWD 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            ++  DA  +GA  L G KY D  R+VS+     G  S  LCGGTH+++T ++    +V 
Sbjct: 630 TVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSFEVVV 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           E S+  G RRIEA+TG+RA+ H       L  +A  L             + EE R+L+
Sbjct: 685 EESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVRRLK 743



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 6/153 (3%)

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH--KIADVNFM 797
           ++ L   L V+  +V+ R++ +  +  KL  QL       +++ +DL     K+ D   +
Sbjct: 782 VRGLTRRLNVAITDVLSRLDSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLI 841

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856
                  +   ++  +D ++KK  +   +L+  S   K  ++  ++ DL+DR   A D  
Sbjct: 842 VAETPGANPNIMRGWIDQIRKKSDTPTAVLLASSMNDKVMLVGGLSRDLVDRGLKAGDWV 901

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +AKV+GG GGG RP MAQ+GG + +K  +A+
Sbjct: 902 GAAAKVVGGSGGG-RPDMAQAGGKDASKLPEAL 933


>gi|156371401|ref|XP_001628752.1| predicted protein [Nematostella vectensis]
 gi|156215737|gb|EDO36689.1| predicted protein [Nematostella vectensis]
          Length = 961

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 317/981 (32%), Positives = 491/981 (50%), Gaps = 128/981 (13%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59
           IR  F++FF +K+ H  +PSSS+IP  DPTL+F N+GM  +K+IF G   P      + +
Sbjct: 10  IRRKFIDFFVEKHNHTFVPSSSVIPHEDPTLLFANAGMNQYKSIFLGTVDPNSDMSKLKR 69

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           AV + QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG +FK+ AI  AW+ LT+   
Sbjct: 70  AVNS-QKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDFFKKGAIDFAWEFLTEVLK 128

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + + RLY+T +      + D E    W    GL   +++    +DNFW M +TGPCGPCS
Sbjct: 129 VPKERLYVTYFGGCDGVECDNETKDYWIG-KGLDPSRVLPFGMSDNFWEMGDTGPCGPCS 187

Query: 174 EIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG    +    +    +EIWNLVF+QF ++N      LP   +DTGMGL
Sbjct: 188 EIHYDR----IGGRDAKALVNMDDPTVLEIWNLVFIQFNRENDGTLKTLPSQHVDTGMGL 243

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281
           ER+ +++Q K +NYD DLF        Q TG++  G  +         + +RV+ DH+R+
Sbjct: 244 ERLVSIIQGKMSNYDTDLFTPFFDKIHQATGVQPYGGQVGLADQNGIDMAYRVVADHIRT 303

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  ++DG  P N GRGYVLRRI+RR + Y+   L  +      L+  +   +G  +PEL
Sbjct: 304 LTVAMSDGGKPDNVGRGYVLRRILRRCIRYSIEKLNASPGFTASLVSVVIDTLGEFFPEL 363

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +    + + +  E+ +F KTL RG  L +   S +  D  + GDVA++LYDT+G P+D+
Sbjct: 364 NKDPQQVMDVINEEEVQFLKTLARGRRLFERTASKI-TDGTIPGDVAWRLYDTYGFPVDL 422

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL  +D+    +  EE + RA+  + G  S + + I   +            
Sbjct: 423 TELMAEERGLR-VDM----EKYEEAKRRAQEIARGKDSASDDAITLDV------------ 465

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLT--------------NGVSSIVKAIVQQGEIVEEAV 506
                   + + + V+   P IDL                 VS  +KA++ + E V E  
Sbjct: 466 ------HLLDKLQNVMNLPPTIDLPKYSYSSDALGSYVFQPVSGTIKALLHEKEFVNEVP 519

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERG 563
            G+   ++ DQT FYAE GGQ+ D G    +G   +  ++ +VQ    G +V H     G
Sbjct: 520 GGEHCGIILDQTSFYAEQGGQIYDEGFMTKEGDEDVEFRVINVQ--VHGGYVLHVGALEG 577

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +R   ++   ID   RRQ   NH+ATH+L+ AL   LG    Q GS + P+ LRFD T 
Sbjct: 578 AIRVGDTMNCLIDEDRRRQCMNNHTATHILNFALRRTLG-EADQRGSLVAPNRLRFDFTA 636

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV- 681
              +T  ++KS E    +I+  +LPV  + +    A    G  A+    Y D VRVVS+ 
Sbjct: 637 KGAMTPEQVKSTELFSKEIVTSDLPVFAKEVALAQAKDVQGLRAIFDEVYPDPVRVVSIG 696

Query: 682 --------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---R 730
                     + G  +S   CGGTH+  +  +    +VSE +I  GIRRI A+TG    +
Sbjct: 697 ASFDELQPNPQAGYKYSIEFCGGTHLQRSSHMETFVLVSEEAISKGIRRIVALTGPEGLK 756

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------QLIHAKRKLQLNVE 784
           A  H    + +++ +   ++    N+  RV+E  +E  +L       +I A +K ++   
Sbjct: 757 AEKHCEALEARVEKIRKEVEAESKNL--RVKEAGQEITRLIEDINAAVISAWKKEEMRQT 814

Query: 785 DLSCHKIAD-------VNFMSH-----------------IISEVDSKELKSVMDALQKKI 820
                KI D          M+                  ++   D+   + V+DA  K+ 
Sbjct: 815 LKKVKKIVDNASKAMQAALMTSAADKAKAMITAEPDRTVVVELFDAGSNQKVLDAAMKQF 874

Query: 821 QS----GIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           ++      ++L+ + +E KK   L  V +D+  +   A +     A +L GG  GG+   
Sbjct: 875 KNLSPLTAVLLLSVDQENKKIICLSQVPKDVTKKGLKADEWTGAIADIL-GGKSGGKEMS 933

Query: 875 AQSGGPNGNKADQAIAGVASF 895
           AQ+ GPN    D+A++    F
Sbjct: 934 AQASGPNVGSIDKALSEAKQF 954


>gi|328874134|gb|EGG22500.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 961

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 313/986 (31%), Positives = 494/986 (50%), Gaps = 116/986 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           M++V+ IR TF++FF +K  H  +PSSS+IP +DPTL+F N+GM  FK IF GQ  P   
Sbjct: 1   MTSVNEIRKTFIDFFSEKCQHTFVPSSSVIPHDDPTLLFANAGMNQFKPIFLGQADPRSE 60

Query: 57  ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
              + +AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+L
Sbjct: 61  QAKLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWEL 119

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT  + LD+ RLY + +        + D EA  LW  +  L A++++     +NFW M +
Sbjct: 120 LTVVYKLDKERLYASYFGGDAAKGLEADTEARDLW--LQFLPAERVLPFGMKENFWEMGD 177

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSEI FD+ E   G     + +    IEIWN VF+Q+ ++  +    LP   +D
Sbjct: 178 TGPCGPCSEIHFDKVEGRKGAAALVNADDPTLIEIWNNVFIQYNREADKSLRPLPNKHVD 237

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVI 275
           TGMGLER+ +++Q    NYD D+F  +    ++VTG  +     V           +RVI
Sbjct: 238 TGMGLERLTSIIQNVGTNYDTDIFMPIFAEIQKVTGYPHPYGGKVGSDDPEQVDMAYRVI 297

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMG 334
            DH+R+ SF IADG +P++EGRG VLRRI+RRA+ Y +  L         L+  +    G
Sbjct: 298 ADHIRTLSFSIADGAVPSSEGRGQVLRRILRRAVRYGKQKLNAPSGFFAKLVDIVVQNFG 357

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYD 392
             +PEL      I   L  E++ F + LDRG+V  D ++  + +   ++     A+ LY 
Sbjct: 358 DFFPELRNRPQHIVSVLEREEKMFARALDRGIVEFDRMVDKVKQQGSKVFPASNAWYLYS 417

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           + G P+D+ + ++  +GL  +D+  + +  +E   R R   L   S  TE          
Sbjct: 418 SFGFPIDLTKLMVDEKGLE-LDMDGYQKLADEDAERGR---LRQRSKKTEM--------- 464

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL----TNGVSSIVKAIVQQGEIVEEAVSG 508
              Q     +L+G             KP ID        + ++VKAI      V    S 
Sbjct: 465 -NMQAEPISILQGDGV----------KPTIDSHKYEQKEIETVVKAIYDGKVFVNSLEST 513

Query: 509 QKVE-----VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVH--HA 558
                    +V + T FY E GGQ+ D G     +       ++D  K   G  VH  + 
Sbjct: 514 DTTRNTVYGIVLESTNFYPEQGGQIYDIGNINSVVDQTTIFNVSDC-KVFGGYVVHIGYI 572

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +   ++    + LT+DY  R  +  NH++TH+++ AL  +LG +V Q GS +    LR
Sbjct: 573 TADAAAIKVGDKVELTVDYTRRSPIMSNHTSTHMINFALRNVLGDNVEQRGSLVDDSKLR 632

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
           FD ++ + +T  E+  ++  VND+IA+ LPV  + ++   A   +G  A+ G  Y D VR
Sbjct: 633 FDFSNDRGMTRQEIIKVDQIVNDLIAKELPVSCKEVDLARAKTINGLRAVFGEVYPDPVR 692

Query: 678 VVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           VVSV              +   +S   CGGTH++++ +     I SE ++ AGIRR+ A+
Sbjct: 693 VVSVGKSVDELLANPTNPEWTQYSIEFCGGTHINNSKDAEYFAITSEEALAAGIRRVVAV 752

Query: 727 TGQRAR----------------SHLMGQDEK--LKSLASFLKVSQGN-----------VV 757
           TG  A                 +   G++ K  + +L + L   QG            ++
Sbjct: 753 TGSDATVVFENNKKLQARFQEATKFTGKELKDAIPTLTALLNEHQGKISASKKFELVEIL 812

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSKELKSVMDA 815
             ++E+ ++  K +  +  ++ Q+ V+ +S   +   +  ++  I + + +  +   + +
Sbjct: 813 SSIQELAKKQYKEEEANLIKEAQVLVDQISNQLVESKSPIYVGTINAGLSNTLMSDSIKS 872

Query: 816 LQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGG--GGGGGRP 872
           +QKK     ++L+   +EK K  V+ +V +        +       KV     G GGG+P
Sbjct: 873 IQKKCPDTSVLLISKDEEKGKICVISIVPKGSTAETKGLKANDWVVKVSAALGGKGGGKP 932

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            +AQ  G +  K D+A+    SF +K
Sbjct: 933 DVAQGAGTDIAKIDEALEFAKSFAQK 958


>gi|291228549|ref|XP_002734240.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 1016

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 305/922 (33%), Positives = 463/922 (50%), Gaps = 106/922 (11%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           IR  F+++F +K  H  +PSSS+IP  D TL+FTN+GM  FK+IF G   P      Y+ 
Sbjct: 56  IRRKFIDYFKEKQSHLFVPSSSVIPREDKTLLFTNAGMNQFKSIFQGAVDPSSPIVKYRR 115

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   ++AWDLL   + L
Sbjct: 116 VVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKETCEMAWDLLINVYGL 175

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +          D E   +WK I G++ D+I+    N+NFW M   GPCG C
Sbjct: 176 SSNRLYVTYFGGNQQLGLSPDIECRNIWKNI-GVAEDRILPYGMNENFWEMGTIGPCGMC 234

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     G    +S   ++    +E+WNLVF+Q+ ++       LP+ +IDTGMG
Sbjct: 235 SEIHYDR----IGNRNATSLINKDDPSVLELWNLVFIQYNREEDGCLSKLPQHNIDTGMG 290

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG--------NNIVNHRVIVDHLR 280
           LER+ +++Q   +NYD DLF+ LIQ  ++ T M  Y+G        N  + +RV+ DH+R
Sbjct: 291 LERLVSIIQGVDSNYDTDLFQPLIQEIQKCTSMPPYQGLVGDSDNENIDMAYRVLADHIR 350

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  I DG  P N  + Y+++R++RRA+ YA   L  +      L+P +   +G AYPE
Sbjct: 351 TLTIAITDGARPGNFKQSYIIKRLIRRAVRYATEKLNASPGQFASLVPIVVDTLGDAYPE 410

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L+     + + +  E++ F K L +G   LD  +S L +  IL GD+A+K+YD  G P+D
Sbjct: 411 LLTNPQQVIDVINREEDLFLKQLKKGRKFLDKKISKLKEPRILPGDIAWKMYDGFGFPID 470

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   ++C      +D+  + +  E      + H +    G   ++ +             
Sbjct: 471 LTI-LMCNEKGVSVDMEGYEEVKE------KTHQITSQGGIKNQLEYGFDTN-------A 516

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ----GEIVEEAVSGQKVEVVF 515
              L+       D          D  N    ++ A +      G+ VE     Q  +V+ 
Sbjct: 517 LQQLKHQNISTTDDSYKYSYECDDDGNYEFEVITAKITSLRVGGQFVESVEPDQSCDVIL 576

Query: 516 DQTPFYAEAGGQLGDTG--CAIGD---GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            QT FYAE GGQL D G    +GD    I  ++ +VQ    G +V H+   +  L     
Sbjct: 577 HQTCFYAEQGGQLWDDGYFTKLGDEAQQIVFEVDNVQ--IYGGYVVHSGTTKKTLSVGEQ 634

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L L I+ + R  L  NH+A H+L+ +L  + G  + Q GS + PD LRFD T+   +TS 
Sbjct: 635 LKLHINEERRLGLMRNHTAAHILNWSLRHLHGDGIEQRGSLVAPDRLRFDFTYEDSLTSL 694

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------- 681
           ++K I+D VN++I Q  PV ++ +  ++A    G  A+ G  Y D V+VVSV        
Sbjct: 695 QVKEIQDQVNEVIEQYTPVDSQEVELDEAKQIEGLRAVFGEVYPDPVQVVSVGIPVTGLL 754

Query: 682 --EYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------ 732
              +  GG  S   LCGGTHV  T  I  L I+ E  + +G+RRI AITG          
Sbjct: 755 TNPFGPGGFMSPVELCGGTHVHMTEHIGKLVIIDEGKVSSGVRRITAITGSDGWEADRKA 814

Query: 733 -------SHLMGQ-DEKLKSLASFLKV--SQGN----VVG-------RVEEIWEEYRKLQ 771
                  S L  Q +E +++L   L+V   + N    VVG       R  E+ EE  KL+
Sbjct: 815 DDLLVKVSELKKQIEESIENLTPSLRVLFDEANNLLEVVGASPIPLWRSRELKEELFKLK 874

Query: 772 -----LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
                    ++K+ +        D++  ++     +  I +  ++K L  +MD  +    
Sbjct: 875 EDIKSFDKKRKKMAVKEAISQAADMANDRLDRPFIVKEIHTGSNTKALMQIMDIFKNTTP 934

Query: 822 SGIIMLVGISKEKKASVLIVVT 843
           S  I+L G+ K+      +  T
Sbjct: 935 SSAILLYGVDKDDCTITCVCYT 956


>gi|296420542|ref|XP_002839828.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636034|emb|CAZ84019.1| unnamed protein product [Tuber melanosporum]
          Length = 959

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 313/946 (33%), Positives = 484/946 (51%), Gaps = 137/946 (14%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59
           S +R TF+++F+ NGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +
Sbjct: 13  SLVRKTFIDYFKNNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPSSDFASLK 72

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ + 
Sbjct: 73  RAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTEIYG 132

Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD  RLY+T +        + D E  +LW+ + G++ + I+     DNFW M + GPCGP
Sbjct: 133 LDPDRLYVTYFEGNKERGLEPDLETQELWRAV-GVADNHILPGNMKDNFWEMGDQGPCGP 191

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSE+ +D      GG   S   + +    IEIWN VF+Q+ ++       LP   +DTGM
Sbjct: 192 CSEVHYDH----IGGRNASHLVNMDDPNVIEIWNNVFIQYNREPDHSLRSLPNKHVDTGM 247

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT-----GMKYEGNNI----VNHRVIVDHL 279
           G ER+ +VLQ+K++NYD D+F  L Q  +++T     G K+   ++      +RVI DH+
Sbjct: 248 GFERLVSVLQDKSSNYDTDVFSPLFQKIQEITKARPYGGKFGAEDVDGIDTAYRVIADHV 307

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSA 336
           R+ +F IADG +P NEGRGYV+RR++RR   YAR   +  P+      ++P L  ++G  
Sbjct: 308 RTLTFAIADGGVPNNEGRGYVVRRVLRRGARYARRY-FQAPIGEFFSKIVPTLVLQLGDV 366

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDT 393
           +PE+ + +  ++E L  E+E F +TLDRG  + D V S    +   ++L G   ++LYDT
Sbjct: 367 FPEIKKKESDVKEILNEEEESFSRTLDRGERMFD-VFSKRATEHNSKVLKGSDVWRLYDT 425

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA--------------HSLGLGSG 439
            G P+D+ + +    GL  I+   F +A  E +  ++A              H LG    
Sbjct: 426 FGFPVDLTRIMAEENGLE-INEEEFERAKAESKEASKARKSSGDVELLKLGVHDLGRLEQ 484

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             E        K+G     G+ +            + C K     T  +S          
Sbjct: 485 MAEVPKTDDVYKFGRGNITGHIM-----------AIYCDKSFRSSTANISRYT------- 526

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHA 558
                     ++ ++ D+T FYAE GGQ  DTG  + DG   L + +VQ    G  +H  
Sbjct: 527 ----------QLGLILDKTNFYAEQGGQEYDTGKILIDGEAELDVQNVQVYG-GYVLHTG 575

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            ++ G L     ++   D   R  +  NH+ TH+L++AL  +LG  + Q GS +  + LR
Sbjct: 576 YIKYGTLSVGDDVICEYDELRRWPIRNNHTGTHVLNYALREVLGDGIEQKGSLVAAEKLR 635

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS------GAAALLGTKY 672
           FD +H   +T AEL+ IE    + I QNL V +     ED   S      G  A+ G  Y
Sbjct: 636 FDFSHKCGVTDAELEMIEKISTEYIRQNLEVYS-----EDVPLSIAREIEGVRAVFGETY 690

Query: 673 NDRVRVVS-----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            D VRVVS           V+ +     S   CGGTHV  T +I  L I+ E+ I  GIR
Sbjct: 691 PDPVRVVSVGVPIEELTRDVKNKQWRKVSIEFCGGTHVQKTDDIKDLIILEENGIAKGIR 750

Query: 722 RIEAITGQRA------------RSHLMG-------QDEKLKSLASFLKVSQGNVVGRVEE 762
           RI A+TG  A            R + +G       ++ ++KS+ + L     + V +V +
Sbjct: 751 RIVAVTGNDAGKVQKIASQFEERINALGKLPAGPRKEAEIKSVQADLNSLVISAVKKV-Q 809

Query: 763 IWEEYRKL--QLI---HAKRKLQLN--VEDLSCHKIADVN---FMSHIISEVDSKELKSV 812
           + +++ K+  QL+    AK+K +L   VE ++ H   + +   F+S +    +SK L   
Sbjct: 810 LKDKFGKIHKQLLDDQKAKQKAELKKAVEIVTEHFKQNPDSPYFVSKLPISANSKALSDA 869

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVL--IVVTEDLLDRFNAVDLA 856
           +  +Q K +   + L     + +  V+    V E++  + +A DLA
Sbjct: 870 IKHVQTKAKDKTVYLFATDDDAEGKVIHGCYVAENVGKQLSAKDLA 915


>gi|19114552|ref|NP_593640.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3183171|sp|O13914|SYA_SCHPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2330773|emb|CAB11162.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 959

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 279/774 (36%), Positives = 416/774 (53%), Gaps = 71/774 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59
           + IR TFL++F+ +GH ++PSSS+IP +DPTL+F N+GM  FK IF G   P       +
Sbjct: 13  NEIRRTFLKYFEDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKLK 72

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI +AWDLLT  + 
Sbjct: 73  RACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTNVYG 132

Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + +LY+T +        + D EA +LW  I G+   ++I  +  DNFW M + GPCGP
Sbjct: 133 LKKDQLYVTYFGGHEESGLEPDLEARQLWLDI-GIDESRVIPGSLKDNFWEMGDQGPCGP 191

Query: 172 CSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           CSEI +D+     +P  +   + +    +EIWN+VF+QF ++       LP   +DTGMG
Sbjct: 192 CSEIHYDRIGNRTVPELV---NMDDPNVLEIWNIVFIQFNREKDGSLRPLPNRHVDTGMG 248

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNIVN-----HRVIVDHLR 280
            ER+ +V+Q KT+NYD D+F  +    +++T  +      G+  V+     +RV+ DH+R
Sbjct: 249 FERLVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYRVVADHVR 308

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSAY 337
           + +F I+DG +P NEGRGYVLRRI+RR   Y R   +  P+      L   +  +MG  +
Sbjct: 309 TLTFAISDGGVPNNEGRGYVLRRILRRGARYVR-KKFGVPIGNFFSRLSLTVVEQMGDFF 367

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PEL +    + E L  E+E F +TLDRG  + +   +   K   + L G+  ++LY+T+G
Sbjct: 368 PELKRKVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTPSKTLQGNDVWRLYETYG 427

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +    G+  ID   F  A    +  ++  S G  SG                
Sbjct: 428 FPVDLTHLMAEEAGIK-IDEPGFEAAQARSKEISKQASKGGSSG---------------D 471

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS--SIVKAIVQQG---EIVEEAVSGQK 510
             +  D+       K D   + +   +   N VS  S++K I  +G   +  E   SG++
Sbjct: 472 DLLVLDVHALGALSKMDD--IPETDDVFKHNSVSLKSVIKGIYHKGGFQKSTEGFNSGEQ 529

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEM 569
           + ++ D+T FYAE GGQ  DTG  + DG+   ++T+VQ  A G  +H   +E G L    
Sbjct: 530 LGLLLDRTNFYAEQGGQEYDTGHIVIDGVADFRVTNVQVYA-GYVLHTGFLEYGNLTVND 588

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+V   D   R  L  NH+ TH+L+ AL   LG  + Q GS ++ + LRFD ++   I  
Sbjct: 589 SVVCEYDEIRRWHLMNNHTVTHILNLALRNTLGDGIDQRGSLVSQEKLRFDFSYKSSIPI 648

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            +L  +E+  N++I  NL V ++ +    A   +G  A+ G  Y D VRVV +       
Sbjct: 649 DKLLLVENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDIDTL 708

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +  D   +S   CGGTH   +GEI    I+ E+ I  GIRRI A+T   A
Sbjct: 709 LQEPKKPDWTKYSIEFCGGTHCDKSGEIKDFVILEENGIAKGIRRIVAVTSTEA 762


>gi|213025001|ref|ZP_03339448.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 514

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 244/543 (44%), Positives = 335/543 (61%), Gaps = 42/543 (7%)

Query: 149 DKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEI 200
           ++IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEI
Sbjct: 4   ERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEI 63

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WN+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LI+A  +VT
Sbjct: 64  WNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVAKVT 123

Query: 261 GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP 320
           G    GN  +  RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG  E 
Sbjct: 124 GSTDLGNKSL--RVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKET 181

Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380
               L+  L   MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D 
Sbjct: 182 FFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGD- 240

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
            L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+  
Sbjct: 241 TLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADY 298

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
              I         A++F GYD L                        ++  V A+   G+
Sbjct: 299 NAMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGK 330

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H   +
Sbjct: 331 AVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQAIG-HLGKL 389

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LRFD
Sbjct: 390 SAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVLRFD 449

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +H++ +  +E++ +ED VN  I +NLP+ T IM+ + A A GA AL G KY++RVRV+S
Sbjct: 450 FSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDAAKAKGAMALFGEKYDERVRVLS 509

Query: 681 VEY 683
           + +
Sbjct: 510 MGF 512


>gi|326491819|dbj|BAJ98134.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1004

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 279/776 (35%), Positives = 404/776 (52%), Gaps = 82/776 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  F++FF+   H   PSS ++P  DPTL+F N+GM  +K +F G   P      + +A
Sbjct: 60  VRQVFIDFFRSRAHTPWPSSPVVPFEDPTLLFANAGMNQYKPVFLGAADPDSPLGRLRRA 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK++AI  AW+LLT+ + L
Sbjct: 120 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKDQAIAYAWELLTQVYKL 178

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              R+Y T +  D++A          +W K   L  ++++     DNFW M +TGPCGPC
Sbjct: 179 PTDRIYATYFGGDDKAGLAPDTDSKDIWLKY--LPTERVLPFGCKDNFWEMGDTGPCGPC 236

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI FD+ G      L   + +    IEIWNLVF+QF ++       LP   +DTGMG E
Sbjct: 237 TEIHFDRIGNRDAASL--VNNDDPTCIEIWNLVFIQFNREADGTLRSLPAKHVDTGMGFE 294

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHLR 280
           R+ ++LQ K +NYD D+F  L  A  ++ G   +           G   + +RV+ DH+R
Sbjct: 295 RLTSILQNKMSNYDTDVFMPLFDAIHKLAGAGIQPYSGKVGSDDVGKVDMAYRVVADHIR 354

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + SF IADG  P N+GR YVLRRI+RRA+ +  + L   +     L+      MG  +PE
Sbjct: 355 TLSFAIADGSRPGNDGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVFPE 414

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHG 395
           L   +  I++ ++ E+  F  TL +G        D V  + G   +L+G  AF L+DT+ 
Sbjct: 415 LKDNEKNIKDIIKEEEASFESTLAKGYERFKKAADAVKENGGT--VLSGQDAFVLWDTYD 472

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL+ +D+  FN A+EE R +AR      G         S+     AT
Sbjct: 473 YPIDLTEVMAVDFGLS-VDMEGFNIAMEEARQKARNARYKAGGK-------SIVLDANAT 524

Query: 456 QFIGYDLLRGS----KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
             +    L  +    KF  E                 SS+VKAI    E +  A   +  
Sbjct: 525 SHLRNQGLASTNDSPKFKHEVH---------------SSVVKAIYTGSEFIATASGDEDF 569

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS- 570
            +V + T FYAE GGQ+ DTG   G      + +VQ  A G  +H      G     +S 
Sbjct: 570 GLVLESTSFYAEQGGQIYDTGSIEGPTGSFTVNNVQVFA-GYVLHIGSFLEGPNSKALSV 628

Query: 571 ---LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +   +DY  R  ++ NH+ TH+L+ AL  +LG H+ Q GS + P+ LRFD +H KP+
Sbjct: 629 GDEVKCKVDYTRRTLIAPNHTCTHMLNFALREVLGDHIDQKGSIVLPEKLRFDFSHGKPV 688

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681
              +L+ IE  VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+     
Sbjct: 689 QPEDLRKIEYIVNQQIKDELEVSAQEIKLVDAKRINGLRAVFGEIYPDPVRVVSIGRKVE 748

Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E ++    S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T + A
Sbjct: 749 DLLANPESKEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECA 804


>gi|225629791|ref|ZP_03787728.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591355|gb|EEH12458.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 535

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/553 (43%), Positives = 334/553 (60%), Gaps = 33/553 (5%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDH 278
           LPK  IDTGMGLER+A V+Q   +NYDIDLF  LI  S++  G      N + H++I DH
Sbjct: 5   LPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCG---RTENKIAHKIIADH 61

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY- 337
           LR+++FLIA+G+LP NEGR YVLRR++RRA  Y  LLGY + L+  + P L     SAY 
Sbjct: 62  LRAAAFLIAEGVLPGNEGRNYVLRRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYM 121

Query: 338 -PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
             EL++AK LIE TL+SE+E F  TL +G+ LL+   + L   + L G+ AFKLYDT+G 
Sbjct: 122 GAELVRAKSLIETTLKSEEENFKDTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGF 181

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLDI  DIL  + +   D   F+ A+ EQ+ RARA   G G  + E++WF L  K+G T+
Sbjct: 182 PLDITLDILKEKKI-NFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTK 240

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GY+    S     D K+L                  +  + E+++ A  G+K+ ++ D
Sbjct: 241 FVGYEFNEVS-----DAKILA----------------IVSSKNEVIDSAKEGEKITIILD 279

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +TPFY E+GGQ+GDTG  I     + I +   K   +++H  IV+ G +    ++  +ID
Sbjct: 280 KTPFYGESGGQVGDTGNLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASID 339

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R+ L  NHSATHLLH  L  ILG HV+Q GS + PD LRFD +H+  +T  +L  +E
Sbjct: 340 KERRQTLRRNHSATHLLHFTLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLFLVE 399

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           D VN +I +NL   T+I +   AI  GA AL G KY+D+VRVV +        S  LCGG
Sbjct: 400 DMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYSDQVRVVKIG------DSRELCGG 453

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV  TGEI L  IV+ESS+  G+RRIEA+TGQ A +++   +  LK +A F+K     +
Sbjct: 454 THVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEI 513

Query: 757 VGRVEEIWEEYRK 769
             R+  + +E++K
Sbjct: 514 TSRLSILSQEHKK 526


>gi|50365429|ref|YP_053854.1| alanyl-tRNA synthetase [Mesoplasma florum L1]
 gi|59798527|sp|Q6F0K3|SYA_MESFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50363985|gb|AAT75970.1| alanyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 892

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 300/932 (32%), Positives = 475/932 (50%), Gaps = 107/932 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF++  H  L   SLIP  DP+L++ NSG+   K  F G++ P    +T 
Sbjct: 6   TNEIRKMWLDFFKEKNHHFLEPVSLIPVEDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F + 
Sbjct: 66  SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAISFAWELLTSDKWFAIP 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LYITV++ED EA++ W    G+  D I R+T + NFW + + GPCGP +EIFFD+GE
Sbjct: 122 VEKLYITVFNEDIEAYEYWINDIGIKQDHIFRLTRDTNFWDVGQ-GPCGPNTEIFFDRGE 180

Query: 182 -----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L     E +RYIEIWN+VF QF          LP+ +IDTG GLER+A++
Sbjct: 181 KWDKENIGPRLLAEDIENDRYIEIWNIVFSQFNNDGFNNYSELPRKNIDTGAGLERIASI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHR-----------VIVDHLRSSS 283
            Q+   N++ D+F   I+  E +     KY   N  + +           VI DH+R++S
Sbjct: 241 FQDTPTNFETDIFWPTIKQIENICDANFKYSIENYFDEKAEQTKINTAFKVIADHVRATS 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F IADG+ P N+ RGY++RR++RRA+     LG   P +  L+  +   M   YP L++ 
Sbjct: 301 FAIADGVFPGNKDRGYIIRRLIRRALMKGMELGINGPFLSTLVINVIDVMKDFYPYLLEK 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           + LIE T+  E+E+F KTL +G   L+ ++ +   D+ + G  A  L++++G P++   +
Sbjct: 361 QNLIETTILIEEEKFLKTLSKGYEALNKMIEN---DKKVTGKNALLLFESYGYPIEQTIE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIG 459
           I   R +  ++I  FN  LE+ + +AR     L      K W    E +      ++F G
Sbjct: 418 IAEDRKVK-VEIEEFNSLLEQAKEQARNARKDL------KAWDKQNEIFTKINVESEFTG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +                      + T+  ++ +  I    EI+ EA + ++V V+ D+TP
Sbjct: 471 W----------------------EETSHKNAKIVYIFTDDEILTEA-TDKEVYVILDKTP 507

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ  D G  +    R ++ D Q+      +H  +++ G ++    +   +D   
Sbjct: 508 FYAEKGGQAADKGYLVNKEARCEVIDTQQGPNHQHIHKILLD-GSIKIGDQIDAFVDETK 566

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHS THL+H AL  +LG  V Q+GS     GLR D T++  I + EL + E  V
Sbjct: 567 RTLTMKNHSGTHLIHSALRVVLGETVMQSGSYNDEHGLRMDFTYNDSIKAEELIAAEKLV 626

Query: 640 NDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            D I + +       + +DA++  GA A    KY+D VRVV       G  SS LCGGTH
Sbjct: 627 LDKINEKINREVYFCSMKDAVSKYGALAFFTEKYDDIVRVVKF-----GDFSSELCGGTH 681

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----------QDEKLKSLASF 748
           V +T +I    I    S  +G+ R++ +T ++A +  +           Q++  K   + 
Sbjct: 682 VDNTIDIEDFMITGLESKGSGVYRVKCLTSKKAINEYLNTEFNKLLKLIQEQNSKYENTK 741

Query: 749 LKVSQGNVVGRVEEIW------EEYRKLQLIHAKRKLQL-----NVEDLSCHKIAD---- 793
           L  +  N+   V+E        E  ++L+LI  K    L      +EDL   K  +    
Sbjct: 742 LIQADQNIENIVKESVTKTISKESIQELKLILEKLSAALKIYERKIEDLLTSKKLEQFKA 801

Query: 794 ---------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                    V  +   ++ ++ K++K+++D  + K +  II+L   ++E    V++ V+E
Sbjct: 802 FEPITNDKGVGTIEQQVNGLNIKDMKNLVDEYKNKFEKLIIILTSETEEGNF-VVVGVSE 860

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            + + ++A+++ +    +     GGG   +AQ
Sbjct: 861 KIQNEYSAIEIFK---NLTISPKGGGNSSLAQ 889


>gi|291533808|emb|CBL06921.1| alanyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 637

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/668 (38%), Positives = 386/668 (57%), Gaps = 43/668 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +L+FF KNGH  LPS+SLIP +DP+L+   +GM PFK  FTG+  P    +TT Q+
Sbjct: 6   LRRRYLDFFVKNGHLELPSASLIPKDDPSLLMIGAGMAPFKAYFTGKMTPPCTRITTSQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR G    D++NVGRT RHHT+FEMLGNFSFG YFK  AI+ AW+ LT E +L + +L+
Sbjct: 66  CVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKYDAIKWAWEFLTGELELPKDKLW 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y +DEEA+K+W   + ++ + I+++   DNFW +  +GPCGP SEIF D GE    G
Sbjct: 122 ATIYPDDEEAYKIWTTETDINPEHIVKL--EDNFWEIG-SGPCGPDSEIFIDLGEERGCG 178

Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
            P  G   + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ K +N+
Sbjct: 179 SPTCGVGCDCDRYLEIWNLVFTQFDRTEDGKYNPLVHKNIDTGCGLERLASVLQNKPSNF 238

Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           + DL   +I+ + +V   +Y  +    ++ +VI DH RS SF++ DGILP+NEGRGYVLR
Sbjct: 239 ETDLMFPIIEYASKVANKEYGKDKETDISLKVIADHARSISFMVMDGILPSNEGRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+ +AR+LG  +  +   +  +       Y EL   K  I++ +  E++RF  TL
Sbjct: 299 RLLRRAVRHARMLGIEDKFLAGAVDVVDEIYSGVYDELTNRKDYIKKVISLEEDRFATTL 358

Query: 363 DRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            +G+ LL+  +  L  +   +L+G+V FKLYDT+G P ++  +IL    +  +D  +F++
Sbjct: 359 TQGMDLLNAEVEKLKAENKTVLDGEVGFKLYDTYGFPWELTDEILHENHMT-LDKEAFDK 417

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++EQR+RAR                      G  + +    LR S            + 
Sbjct: 418 AMDEQRTRAR-------------------NARGENKRMDIPDLRDSNI---------GEL 449

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            +D T   + IV  I +  +       G +  ++ D TPFYAE GGQ GD G    D   
Sbjct: 450 KVDETARQAKIV-CIWKDAKTTNSLEDGDEAGLILDVTPFYAEGGGQEGDIGSLKTDMGN 508

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+ D +K  +G   +   V  G L    ++ +T+D +N+   + NH+ATHLL  AL  +
Sbjct: 509 AQVIDTKKLPDGSVYNIVHVTEGSLHVGDTVEITVDMKNKLASARNHTATHLLQAALKRV 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G H++Q GS +    LRFD +  +PI++ +L+ +E+ VN  I     V    MN+EDA 
Sbjct: 569 VGDHINQAGSAVNAHHLRFDFSSFEPISAEQLQQVEEMVNAEILTGKDVEISHMNQEDAK 628

Query: 661 ASGAAALL 668
            S    ++
Sbjct: 629 KSWCYGII 636


>gi|71033767|ref|XP_766525.1| alanyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68353482|gb|EAN34242.1| alanyl-tRNA synthetase, putative [Theileria parva]
          Length = 1011

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 286/783 (36%), Positives = 436/783 (55%), Gaps = 62/783 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R  F+++F    H   PSSS++P NDPTL+F N+GM  FK+I  G+     E    + V
Sbjct: 64  VRKQFIDYFVSKNHVHWPSSSVLPHNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 123

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDL++VG+   H T+FEMLGN+SFG YFK  AI  AWDLLT  + LD
Sbjct: 124 CNSQKCIRAGGKHNDLEDVGQDCYHQTYFEMLGNWSFGAYFKPEAISYAWDLLTNVYKLD 183

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY+T +      + D E  ++W K   L +++I+   + DNFW MA+TGPCGPC+EI
Sbjct: 184 PSRLYVTYFGGDDSCEPDHETREIWLKF--LPSNRILPFGSKDNFWEMADTGPCGPCTEI 241

Query: 176 FFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            +D      GG   SS    +    +E+WN+VFMQ+ +        LPK  +DTGMGLER
Sbjct: 242 HYDH----IGGRDASSLVNADDPNVVELWNIVFMQYNRSRNGVLERLPKGCVDTGMGLER 297

Query: 233 MATVLQEKTNNYDIDLFKHLI-QASEQVTGMK-YEGNNI---VNHRVIVDHLRSSSFLIA 287
           + +VL    +NYD DL   +I   SE +  ++ Y+G N    V +RV+ DH+R  S  I+
Sbjct: 298 LCSVLNNTNSNYDTDLLNDVILYISELLPELESYKGGNSPLDVAYRVVSDHIRCLSVAIS 357

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           D + P+N+GRGYVLRRI+RRA+ Y R      EP +  L+ ++   +G AYP L+  ++ 
Sbjct: 358 DRVYPSNDGRGYVLRRILRRAVRYCRDYFNTREPFLHRLVRSVSKLLGHAYPNLVTERVN 417

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  +  E+  F +TLD+G+     +++   + +++NG  AF LY ++G PLD+   +L 
Sbjct: 418 IESVVFDEERLFLQTLDKGVEKFKKMVAK-SEVKVINGQDAFLLYQSYGFPLDLT--MLM 474

Query: 407 ARGLA-GIDIISFNQALE--EQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           AR L  G+D+I +   L+  +Q+S AR ++         +++  SL      T      +
Sbjct: 475 ARELGIGVDVIGYYTELKLHQQKSEARIYTDFNSVESRCDRLLKSLSADRINT------I 528

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAV--SGQKVEVVFD 516
           L+    +  D K+   K   D ++ V  + KA    IV    I++E    S   V +V D
Sbjct: 529 LQMCNNVYTDDKL---KYDWDSSDPVRKVFKAKLLSIVTADSILKELEYDSDDLVCLVTD 585

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTI 575
           +TPFYAE GGQ+ DTG  I D   L++  V K + G+  H  +  E G+LR      L +
Sbjct: 586 RTPFYAEGGGQIYDTG-YIND---LEVLRVYKLS-GLVFHFCLADESGLLRCGDECELKV 640

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY  R +++ NH+ATH+L+  L  IL     Q GS +  + L+FD ++ + +    ++ +
Sbjct: 641 DYHRRVKVASNHTATHILNFVLRDILEESSYQRGSQLDEEKLKFDYSYGQQLPDNLIRQV 700

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--ED-GGVHSS 691
           E  + + +    P+ T  +  + A+   G  A    KY + VRVV+V+   ED  G H+S
Sbjct: 701 EQRMMEFVRSGAPLRTTEIEYKKALEIPGIRANFDEKYPEVVRVVNVQMGSEDFSGEHTS 760

Query: 692 A-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLAS 747
             +CGGTH+++T  I  + +V E  I  G+RR+  +T    +R+R  L+   ++L  L  
Sbjct: 761 TEVCGGTHLTNTKTIQDVAVVGEEGISKGVRRLTIVTNDQCRRSRIDLLNYYQRLGDLEK 820

Query: 748 FLK 750
            LK
Sbjct: 821 SLK 823


>gi|242012157|ref|XP_002426803.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510999|gb|EEB14065.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 983

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 290/772 (37%), Positives = 424/772 (54%), Gaps = 58/772 (7%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           +R TF++FF +K  H+ + SSS IP +DPTL+F N+GM  FK IF G   P      +  
Sbjct: 9   VRQTFIDFFIKKKQHQYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMAKWVR 68

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT  + +
Sbjct: 69  VVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTTVYHI 128

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +        + D E  K+W  + G+    ++     DNFW M ETGPCGPC
Sbjct: 129 SPDRLYVTYFGGDSASGLEPDSECKKIWIDL-GVPESHVLPGNMKDNFWEMGETGPCGPC 187

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SE+ +D+ G      L   +++    +EIWNLVF+QF ++       LPK  ID GMG E
Sbjct: 188 SELHYDRIGNRNASHL--VNQDDPDVLEIWNLVFIQFNRETDGSLKTLPKRHIDCGMGFE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD D+F  L  A ++ TG   Y+G       + I + +RV+ DH R+ 
Sbjct: 246 RLVSVIQNKRSNYDTDIFTPLFDAIQKGTGSPPYKGKVGAEDVDGIDMAYRVLADHARTL 305

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ Y      T+P     L+  +C  +G  + E+ 
Sbjct: 306 TIALADGGRPDNVGRGYVLRRILRRAIRYGTEKLNTKPKFFSSLVKTVCDTLGDTFSEIR 365

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I E +  E+E+F KTL RG  LL+  ++ +GK ++L GDVA++LYDT+G P+D+ 
Sbjct: 366 RDPDTIMEIINEEEEQFLKTLSRGRNLLNRTIAKIGKSKVLPGDVAWRLYDTYGFPVDLT 425

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   +GL+ +D+  +    EE R +A+  S G      + I   +   +  T+     
Sbjct: 426 QLMAEEKGLS-VDMTGY----EEARKQAQLLSQGKEGKVDDGIALDV---HAITELQNLK 477

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +       K + K   Q    +       + + AI  + + V+   SG+K  ++ D+T F
Sbjct: 478 IPPTDDSPKYNYKAKQQDKNAEYEFQKCEAKITAIRHKKKFVDSINSGEKCGILLDRTLF 537

Query: 521 YAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           YAE GGQ+ D G  I    + +   I +VQ KA G  +H    E G+ +   ++VL +D 
Sbjct: 538 YAEQGGQIFDEGYMIKKNDENVEFSIYNVQVKA-GYVLHFGTTE-GVFKKGDTVVLHLDT 595

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +  NH+ TH+L+ AL  +LGS   Q GS + PD LRFD T+   +T  ++K+ ED
Sbjct: 596 ARRRLVMNNHTGTHILNFALREVLGSGCEQKGSLVAPDRLRFDFTNKSAMTPDQIKAAED 655

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSV--EYEDGGVHSSA 692
           +V  +IA+N  V  +  N   A+A   +G  A+    Y D VR+VSV    ED   + S+
Sbjct: 656 SVKRVIAKNCEVFAK--NTPLAVAKTVNGVRAMFDEHYPDPVRIVSVGAAVEDLVANPSS 713

Query: 693 ---------LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
                     CGGTH+  +G +    I SE +I  GIRRI A+TG  A   L
Sbjct: 714 SLGMSVPAEFCGGTHLHRSGHVGDFVISSEEAIAKGIRRIVALTGPEASKAL 765


>gi|315453099|ref|YP_004073369.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132151|emb|CBY82779.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 872

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 286/764 (37%), Positives = 414/764 (54%), Gaps = 58/764 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I+  FL+ F++  H  +PSSSL+P +D +L+FTN+GMV FK+IF G+  P     T+ Q 
Sbjct: 3   IKNAFLQHFERLNHVRVPSSSLVP-DDSSLLFTNAGMVQFKDIFLGKVAPFTPRATSAQL 61

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A+D + K      + +Y
Sbjct: 62  CMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAYDFVHKTLGFQNKDIY 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPG 185
           I+V+++D +A+KLW+K   +    I  +   DNFW MA+TGPCG CSEI+ DQG +    
Sbjct: 122 ISVHEKDTQAYKLWQKF--VPESHIKTMGDKDNFWQMADTGPCGYCSEIYIDQGAQAFHS 179

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                  EG+R++EIWNLVFMQ+++  +     L +  IDTGMGLER+  +L+   NN+D
Sbjct: 180 EQDYFGGEGDRFLEIWNLVFMQYDRSKEGVLTPLSQPCIDTGMGLERVQALLEGVQNNFD 239

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             LFK L+   E+V  + Y  +   + RV+ DH RS  FL+A G+   N GRGYVLRRI+
Sbjct: 240 SSLFKPLMACIEEVFDLPYSAHK-ESFRVLADHARSVVFLLAMGVYFDNTGRGYVLRRIL 298

Query: 306 RRAMCYARLLGY------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           RRA+ +  LL +      +EP    +L ++C  M   Y  L + +  ++   ++E+E F 
Sbjct: 299 RRALRHGYLLEHAKGRELSEPFFYKILGSVCASMRD-YSILQEQQESLQAECKAEEELFL 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL++G+ L +  L+    +EI +G VAFKLYDT+G PLD+  D+L  +G+  +D+  + 
Sbjct: 358 NTLEKGMHLFESALAE--SNEIFSGAVAFKLYDTYGFPLDLTMDMLRDKGIE-VDLAGYE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++EQR+R++       SG  + +      K     F GY      + +K   + L   
Sbjct: 415 ACMQEQRARSQFKQ----SGAKDSLKTLDLSKLEPNAFEGYH----HESLKASIRALY-- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            P D    VS            V+ A    K  VV D+TPFY + GG +GD G  + D  
Sbjct: 465 APDDQGALVS------------VQSAAQNTKAYVVLDKTPFYPQGGGPIGDKGVLL-DLT 511

Query: 540 RLQITDV--QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              I  V   +K   I +     +R     +  +   ID   R +++ +HSATHLLH AL
Sbjct: 512 HNPIAHVLDTQKVGAINISLVEFKREGRVGDGVIAQVID---RAEIAKHHSATHLLHLAL 568

Query: 598 STILG---------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
             +LG         + + Q GS I    LRFD +  + ++ AE++++E+ VN  I+    
Sbjct: 569 REVLGRAAQAEGKNAQIQQKGSHIETTRLRFDFSFYRALSDAEIEAVEEFVNTQISMGAS 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                M  E A  SGA  L   KY + VRVV +        S   CGG HVS +  I   
Sbjct: 629 TNIEHMGAEAAKQSGAVMLFEDKYLEEVRVVRI------AGSLEACGGVHVSDSAHIGGF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            I   SS+ AG+RRIEA+ G+     +  +   L+     LK S
Sbjct: 683 AITKSSSVSAGVRRIEAVCGKTYYQFIAQERATLRQARQKLKTS 726


>gi|225560127|gb|EEH08409.1| alanyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 1029

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 322/970 (33%), Positives = 481/970 (49%), Gaps = 126/970 (12%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
            +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P          
Sbjct: 106  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDP---------- 155

Query: 67   CVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
                   ++D   + R  N   TFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+  RL
Sbjct: 156  -------NSDFATLRRAHNSQKTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLNPDRL 208

Query: 126  YITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            Y+T ++         D EA +LW  + G++ D ++     DNFW M E GPCGPCSEI +
Sbjct: 209  YVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCSEIHY 267

Query: 178  DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            D+     GG   S   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+ 
Sbjct: 268  DR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERLV 323

Query: 235  TVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFL 285
            ++LQ K++NYD D+F  L +   ++TG + Y G       + I   +RV+ DH+R+ +F 
Sbjct: 324  SILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTFA 383

Query: 286  IADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQA 343
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ + 
Sbjct: 384  ISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRRK 443

Query: 344  KLLIEETLRSEDERFGKTLDRGLVL-----LDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            +  + E L  E+  F KTLDRG  L     L       GK   L+G   ++LYDT G P+
Sbjct: 444  QTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGK---LHGADVWRLYDTFGFPV 500

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            D+ + +   RGL  ID    N   EE R +A+  S G G  T + +  ++ +  G  + +
Sbjct: 501  DLTRLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKRTADVVKLTVHD-LGLLETM 554

Query: 459  GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEVVF 515
              D+ + +   K  R              ++S +KAI    + V+   +   G++  ++ 
Sbjct: 555  D-DVPKTNDDAKFGR------------GNITSQIKAIYYNKKFVDSTKDIPQGEQFGIIL 601

Query: 516  DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++  
Sbjct: 602  DRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVIAE 660

Query: 575  IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
             D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ 
Sbjct: 661  YDELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEK 720

Query: 635  IEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVS--VEYED--GG 687
            IE    D I QN  V  + +    AIA   SG  A+ G  Y D VRVVS  VE E+    
Sbjct: 721  IERISTDYIRQNCAVYAKDVPL--AIARGISGVRAVFGETYPDPVRVVSVGVELEEILQN 778

Query: 688  VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS-HLMGQD 739
            VH       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A     + ++
Sbjct: 779  VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKE 838

Query: 740  --EKLKSL------------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNVE 784
              E+L+              A  L+V    +     E      +   IH K  + Q   +
Sbjct: 839  FGERLRRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQ 898

Query: 785  DLSCHKIADV----------NFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGI 830
             L   K  D              SH++ ++    + K L   ++ ++ K+Q   + +   
Sbjct: 899  KLESKKALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYMFAA 958

Query: 831  SKEKKASVLIVVTEDLLDRFNAV--DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             KE    V        L    A   D A   + ++GG  GG  P ++   G    K D+A
Sbjct: 959  DKEAGKVVHGCHVAQALSEQGATPNDWANTVSSIVGGRAGGKAP-ISIGNGTEAEKLDEA 1017

Query: 889  IAGVASFLKK 898
            I     +L+K
Sbjct: 1018 IKAATEYLEK 1027


>gi|170039921|ref|XP_001847766.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167863508|gb|EDS26891.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 967

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 311/975 (31%), Positives = 491/975 (50%), Gaps = 109/975 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           IR  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +   
Sbjct: 10  IRNIFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRT 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L 
Sbjct: 70  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKLP 129

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +        + D E   +W K+ G+  + I+  +  DNFW M ETGPCGPCS
Sbjct: 130 SDRLYVTYFGGHPESGLEPDLECRDIWLKL-GVKEEHILPGSMKDNFWEMGETGPCGPCS 188

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+QF ++      +LPK  ID GMG E
Sbjct: 189 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMGYE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNHRVIVDHLRSS 282
           R+ +V+Q+K +NYD D+F  L QA ++ TG   Y+G           + +RV+ DH R+ 
Sbjct: 246 RLVSVIQDKRSNYDTDVFVPLFQAIQKGTGAPDYQGRVGAEDVDGVDMAYRVLADHARTI 305

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G  +PE+ 
Sbjct: 306 TIALADGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFATLVDTVVELLGDTFPEVK 365

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D +
Sbjct: 366 KDPQHIKNIINEEEQQFLKTLSRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD-L 424

Query: 402 QDILCARGLAGIDIISFNQA------LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
             ++       ID+  + +A      + + + +++  ++ L      +    L+EK   T
Sbjct: 425 TGLMAEEKNMTIDMEGYEKAKHQSYIISQGKEKSKTATVDLDVHAISE----LQEKKVPT 480

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKP-PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
                     +   K   K     P    +    +  V A+      V+E  +GQ+  V+
Sbjct: 481 T---------NDTFKYHYKAESTDPLAAYVFEPCTGKVLALRYNNAFVDEVQAGQECAVI 531

Query: 515 FDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            D+T FYAE+GGQ+ D G  +    +     +  V  +  G  +H  +VE G+LR    +
Sbjct: 532 LDKTNFYAESGGQIYDQGYLLKVNDESTEFNVNLVYNRG-GYVLHIGVVE-GVLRVGDEV 589

Query: 572 VLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
              +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  
Sbjct: 590 ACHMDVV-RRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKAAMTIE 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED-- 685
           ++   E    +++ +N+ V  +      A A  G  ++    Y D VRV+S  V  ED  
Sbjct: 649 QVAEAERLTREVVKKNMQVYAKESKLASAKAIKGLRSVFDEVYPDPVRVISFGVPVEDLE 708

Query: 686 -------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RS 733
                  G   S   CGGTH+  +G ++   I +E +I  GIRRI A+TG  A     ++
Sbjct: 709 ANPEGVAGTETSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEAIKALKKT 768

Query: 734 HLM-GQDEKLKSLASFLKVSQGNV--VGRVEEIWEEYRKLQLIHAK--------RKLQLN 782
            L+ G+   LK+     K    +   V ++ E+ E+  +  + + K        + L+  
Sbjct: 769 ELLEGELNALKATIDADKTGADSREHVKKIVELNEDVSQAVIPYVKKDEIRNQLKSLKKT 828

Query: 783 VEDLS------------------CHKIADVNFMSHIISEV-DSKELKSVMDALQK-KIQS 822
           ++D                    C    D  F+ H +    ++K L S +  ++K  ++ 
Sbjct: 829 LDDKERAARAAVATTVVEAAKELCAANKDAPFIVHRLEAFSNTKALDSALKEVRKLNVEQ 888

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVD--LARLSAKVLGGGGGGGRPHMAQSGGP 880
             + +      KK   L  V +  +++    +  ++ +S  +  GG GGG+P  AQ+ G 
Sbjct: 889 SALFVSSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM--GGKGGGKPESAQASGG 946

Query: 881 NGNKADQAIAGVASF 895
             +K ++ +    +F
Sbjct: 947 AFDKVEEILELARAF 961


>gi|94502213|ref|ZP_01308705.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94425654|gb|EAT10670.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 448

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/436 (52%), Positives = 300/436 (68%), Gaps = 14/436 (3%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL +F++NGH ++ SSSLIP NDPTLMFTN+GM  FK+ F GQE   Y    +
Sbjct: 3   TAEIRQAFLRYFEENGHTVVASSSLIPANDPTLMFTNAGMNQFKDTFLGQETRNYTRAAS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT +   +L 
Sbjct: 63  SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWGFLTGKDWLNLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L +TVY +D+EA+ +W +  GL  DKIIRI  N       DNFW M +TGPCGPCSE
Sbjct: 123 VEKLLVTVYADDQEAYDIWHQEMGLPEDKIIRIGDNKGEKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +    +   LPK SIDTGMGLER+
Sbjct: 183 IFFDHGDHIWGGKPGTPEEDGDRFIEIWNIVFMQYNRYADGKMEPLPKPSIDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+IDLF++LI A+ + TG +   N  +   VI DH+RS  FLI+DG++P+
Sbjct: 243 SAIMQGVHSNYEIDLFQNLIAAAAKATGTQDLSNKSL--LVIADHIRSCGFLISDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +  LLG T+     L+ AL  EMG AYPEL Q +  +E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRALRHGHLLGATDLFFFKLVAALVDEMGDAYPELKQNQAQLEKILKL 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F KTLD G+ LL+  ++ L K + + G+  FKLYDT+G P+D+  DI   + L  +
Sbjct: 361 EEEQFAKTLDNGMKLLEEAIAEL-KGDTIPGETVFKLYDTYGFPVDLTADIAREKDLK-V 418

Query: 414 DIISFNQALEEQRSRA 429
           D   F   +EEQ++  
Sbjct: 419 DEAGFESCMEEQKNNG 434


>gi|47937910|gb|AAH71378.1| Aars protein [Danio rerio]
          Length = 757

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 273/765 (35%), Positives = 407/765 (53%), Gaps = 76/765 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A
Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G 
Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +        
Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512
               D LR       D     +    D  N         V A+ ++   V+E ++GQ+  
Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           V+ D+T FYAE GGQ  D G  + +      R++ T    +  G +V H     G L+  
Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 586

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             L L +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    ++
Sbjct: 587 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681
           + E++  E+    +IA    V        DA  + A A+ G +      Y D VRVVS+ 
Sbjct: 646 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 700

Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
                         G + S   CGGTH+ ++       IVSE +I
Sbjct: 701 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAI 745


>gi|115610688|ref|XP_797369.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) [Strongylocentrotus purpuratus]
 gi|115964130|ref|XP_001180526.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) [Strongylocentrotus purpuratus]
          Length = 1041

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 304/931 (32%), Positives = 465/931 (49%), Gaps = 114/931 (12%)

Query: 4   VSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
            S +R  FL+ FQ  N H  +PSSS+IP  DPTL+FTN+GM  FK+IF G   P      
Sbjct: 78  ASQVRKKFLDHFQGLNDHVFVPSSSVIPYGDPTLLFTNAGMNQFKDIFQGTIHPDMVQNC 137

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           Y+ V   QKC+R GGKHNDLD+VG+   HHTFFEMLGN+SFG +FK+ A  +A DLLT  
Sbjct: 138 YRRVVNSQKCIRVGGKHNDLDDVGKDTTHHTFFEMLGNWSFGDFFKKEACTMALDLLTSV 197

Query: 118 FDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L    LY T +          DE   ++W  + G+  D+++     DNFW M   GPC
Sbjct: 198 YGLPLENLYFTYFKGNSELQLGADEATRQIWLDL-GVPEDRVLPFGMADNFWEMGAVGPC 256

Query: 170 GPCSEIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           GPC+EI FD+         +  G P         +EIWNLVFMQF +        LPK  
Sbjct: 257 GPCTEIHFDRHGNRNASHLVNLGDPD-------VLEIWNLVFMQFYRNEAGSLHDLPKHH 309

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRV 274
           +DTGMGLER+ ++LQ   ++YD DLF+ LI+  E+   ++ Y+G       ++I   +R 
Sbjct: 310 VDTGMGLERLVSILQGVPSSYDTDLFQPLIKRLEETCPVRPYQGLLGEKDQDHIDTAYRA 369

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R  +  IADG  P ++ RGYV++R++RRA+ YA       P  +  L+  +   +
Sbjct: 370 VADHARMLTVAIADGCRPDSQKRGYVIKRVIRRAVRYATEKLQAPPGALGSLVHLVVISL 429

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G+ YPEL +  + I + + +E+E+F  TL +G   L   ++ L    +L GD+A+K+YD 
Sbjct: 430 GNTYPELEEDPVYIADVINNEEEQFLTTLKKGEKYLKKAITELSSQTVLPGDIAWKMYDA 489

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQA-LEEQRSRARA--------HSLGLGSGTTEKI 444
           +G PLD+   I    GL G+DI  F ++ LE +   +R          ++ L +     +
Sbjct: 490 YGFPLDLTTLIADENGL-GVDIEGFEKSRLESKEITSRGGIKNQQNLSNIKLETTDISHL 548

Query: 445 W-FSLKEKYGATQFIGYDLLRGS-KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
              S+K+   + ++      RG   F +    +L  K P                +G  V
Sbjct: 549 HELSVKDTDDSYKYNYQHHRRGKYTFPRIHAHILALKTP----------------KG-FV 591

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAI 559
           E A SG++  ++ D+T FYAE GGQ  D G  +    + +   + DVQ  + G +V H  
Sbjct: 592 ECAASGEECAIILDRTTFYAEQGGQQWDEGSFVSADDEELMFSVYDVQ--SYGGYVLHLG 649

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                +     + L ++ + R +L  NH+ TH+L+ AL  +LG H+ Q GS + PD  RF
Sbjct: 650 TTAETVSIGDHVTLYVNEERREKLMRNHTGTHILNFALRQVLG-HIEQKGSSVAPDRFRF 708

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678
           D    K I+  +L+ I    N++I+ +LPV    +  + A+   G   + G  Y D V V
Sbjct: 709 DFNAEKSISDRQLQQISSIANNLISNSLPVHQESIPLQKALTIEGLRTMTGETYPDPVTV 768

Query: 679 VSVEYEDGGVH----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           V + ++DG ++          S  LCGGTHV +TG I  L IVSE  +  G+RR+  +T 
Sbjct: 769 VCIGHQDGQLNGDMTKLGMETSLELCGGTHVKNTGHIRRLVIVSEKLVSKGVRRLTVVTS 828

Query: 729 QRARSHLMGQDEKLKSLASF----LKVSQGN-------VVGRVEEIWEEYRKLQL-IHAK 776
                     ++ L+ L+        VS  N       V+  +E + E+     + +  K
Sbjct: 829 NDVMLADYTSNKFLQRLSQLETEVYNVSTSNNPEMRDDVIASLESLVEDLEGAHIDLWKK 888

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI------IMLVGI 830
           R++   V D           M + + + D    KSV+  + K++          + LVG+
Sbjct: 889 REMNRRVAD-----------MQNKLKKADKLNKKSVIKQVAKRLHEEFREKKSEVCLVGV 937

Query: 831 SKEK-KASVLIVVTEDLLDRFNAVDLARLSA 860
           + +     VL+ V + L D F +  L  LS 
Sbjct: 938 TGDSIDNKVLLKVQQSLEDEFGSTPLMLLST 968


>gi|156089757|ref|XP_001612285.1| alanyl-tRNA synthetase family protein [Babesia bovis]
 gi|154799539|gb|EDO08717.1| alanyl-tRNA synthetase family protein [Babesia bovis]
          Length = 978

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 278/789 (35%), Positives = 421/789 (53%), Gaps = 57/789 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R+ F+  F+K+GH    SS ++P NDPTL+F N+GM  FK+I TG+     E    + V
Sbjct: 25  VRSEFIRHFEKHGHVFWKSSPVLPHNDPTLLFANAGMNQFKDIITGKADQSTEYGRLRRV 84

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK+ AI +AW+L+T+ + LD
Sbjct: 85  CNSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDMAWELMTEVYKLD 144

Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY+T +           DEEA  LW  +  L A +I+     DNFW MA+TGPCGPC
Sbjct: 145 KSRLYVTYFGGDPKLPNCGPDEEARDLW--LRHLPASRILPFGMKDNFWEMADTGPCGPC 202

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D      GG   +S    +    +E+WNLVFMQ+ +++     +LP+  +DTGMG
Sbjct: 203 SEIHYDH----IGGRDAASLVNADDPMVVELWNLVFMQYNRKSDGSVELLPRPCVDTGMG 258

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNI---VNHRVIVDHLRSSSF 284
           LER+  VL+   +NYD DLF  +     ++      Y G++    V +RV+ DH R  + 
Sbjct: 259 LERVCAVLKSSNSNYDGDLFTDIFAYVNKLMPHLPPYGGSDSMIDVAYRVVADHARCLTV 318

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            IADG+ P+N+GRGYVLRRI+RRA+ Y +  LG + P M  L+  +   +G A+PE+   
Sbjct: 319 AIADGVEPSNDGRGYVLRRILRRAVRYGKEHLGSSGPFMSKLVDCVVASLGVAFPEIQNN 378

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLP 397
              I  T+ +E+  F +TLD+G      +++ L       KD +++G  AF LY + G P
Sbjct: 379 NDKIAATIHNEEVLFLETLDKGCDRFRKMVAKLQAGTENSKDLVVSGADAFLLYSSFGFP 438

Query: 398 LDIMQDILCARGLA-GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            D+ Q  L AR +   +DI  FN+  +  +  +    L       E+    L     A  
Sbjct: 439 PDLTQ--LMAREMGLDVDIDGFNEHFKRHQQLSE-KKLCKSDDPVEQGMADLLSTLSADV 495

Query: 457 FIGYDLLRGSKFMKEDRKV--LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
                   G +   +  K     +   +DL   V  + +  +    + +    G    +V
Sbjct: 496 LATISNSIGGRVTDDSLKYHGFAEAYDVDLEYDVEVLAQWSLSG--LNKPLTEGDVFVLV 553

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+TPFYAE+GGQ+ D G  +G      +  V K A G+  H  +   G       +   
Sbjct: 554 LDRTPFYAESGGQIWDVG-TLGP---FNVMKVLKMA-GMVFHFCVYHEGNAMPGARVKAK 608

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +DY+ R +++ NH+ THLL+  L  +      Q GS +  + L+FD+  +K +    L+ 
Sbjct: 609 VDYKRRVKVACNHTGTHLLNFVLREVYDEQSYQKGSQLDEEKLKFDIAANKQMPDETLQR 668

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----DGGVH 689
           IED + +II  N  +  R ++ +DA+   G  A     Y + VRVV++  +    DG  +
Sbjct: 669 IEDRMQEIIDANWKIEVREIDFKDAVEIPGIRANFTDVYPEVVRVVAMTKDGQPIDGKAY 728

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR---ARSHLMGQDEKLKSLA 746
           S  +CGGTHV  TG +    IV E S+  G+RR+   T ++   +++ L    ++L++L 
Sbjct: 729 SVEICGGTHVPFTGVLKSAIIVGEESVSKGVRRLTLATNEKSEDSKAILASYWQQLETLE 788

Query: 747 SFL-KVSQG 754
           S L K S G
Sbjct: 789 SELYKFSDG 797


>gi|325120127|emb|CBZ55681.1| hypothetical protein NCLIV_061050 [Neospora caninum Liverpool]
          Length = 1034

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 296/845 (35%), Positives = 423/845 (50%), Gaps = 124/845 (14%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60
           ++R+ +++FF+ +GH + PSS +IP  D TL+F N+GM  FK IF GQ     P+   + 
Sbjct: 28  AVRSAYVDFFEVHGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQVDRNSPLSKLRR 87

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + +
Sbjct: 88  VTDTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKRDAIAWAWQLLTEVYKI 147

Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            + RLY + +           D EA  LW  +  L  ++++     +NFW MA+TGPCGP
Sbjct: 148 PKDRLYASYFGGDPRLPTCPPDNEARDLW--LQYLPPNRVLPFGAKENFWEMADTGPCGP 205

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   SS    +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMK-YEG------NNIVN--HRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L  + +E   G++ YEG       ++++  +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFIALFDKIAELTPGLRPYEGKIGEEDKDLIDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+  + + +GS +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMKEGAFPQLVSVVVSLLGSTF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVIRILHKEEQQFSRTLDNGVERFKKVANSLKAKGVKVFPGSEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +    GL  +D   F +  +  R  +   S   G               GA 
Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFERKFDAHRVASENTSFKQGGA-------------GAV 487

Query: 456 QFIGYD----LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV----------------KAI 495
             +  D    L +       D     Q    DL   V+                   K  
Sbjct: 488 YALPPDQHHLLAKNRNLAPTDDSAKYQWNVKDLAALVAQDAVEAAPVKAKVAAIWDGKRF 547

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGI 553
                 V    S   V V+ D+T FYAE GGQ+GD G    +  G   ++ D QK  + +
Sbjct: 548 APDAAAVASPTSENFVAVILDKTCFYAEQGGQVGDVGRLVDLSSGAEFEVIDSQKSGDYV 607

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL------------ 601
            +H   V +G L+    LV  +DY  R +L+ +H+ THLL+ AL  +L            
Sbjct: 608 -LHIGTVSKGTLKEGSELVPLVDYVRRFKLAQHHTGTHLLNFALREVLVRKMRKNAEGGD 666

Query: 602 ------GSH----------------VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                 G H                + Q GS +    LRFD    KP+ + ++ ++E+ V
Sbjct: 667 KREDTNGLHIRESCLNERELSDEEDIQQKGSLVEEKRLRFDYAGEKPMENEDILAVENVV 726

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--EYED----------- 685
            D IA+  PV  R +  E A+   G  A+ G  Y D VRVVSV    ED           
Sbjct: 727 KDCIARERPVHYREIALEQAMKIPGLRAVFGEVYPDPVRVVSVGSPIEDLVELAVSGKGE 786

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKL 742
               S  LCGGTH+ +  +I    I+SE S+  G+RR+ A+TG     AR  L   ++  
Sbjct: 787 TPFASIELCGGTHLHNAAQIQDFCIISEESVAKGVRRVVAVTGDPALEARKELEELEKAF 846

Query: 743 KSLAS 747
            SLA+
Sbjct: 847 ASLAA 851


>gi|169836863|ref|ZP_02870051.1| Alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 568

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/606 (39%), Positives = 362/606 (59%), Gaps = 62/606 (10%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  +  +TT 
Sbjct: 4   NEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFPRITTY 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   LD  R
Sbjct: 63  QKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLDPER 118

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD------ 178
           LY++VY  D+EA+++W K  G+  D+I+R+   DN+W+    G CGPCSEI++D      
Sbjct: 119 LYVSVYKTDDEAYEIWNKEIGVPEDRIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQNMGK 178

Query: 179 ---QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              +  C PG      +EG+R++EIWNLVF ++ +        LP+ +IDTG GLER+A+
Sbjct: 179 NNEEINCKPG------DEGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIAS 232

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           V+Q+K NN++ D+F  +I+  E+V  +K E   I   +VI DH+R+S FLIADG+LP+NE
Sbjct: 233 VVQKKDNNFETDIFMPIIKGIEKVLDIKKEEFEITV-KVIADHIRASVFLIADGVLPSNE 291

Query: 296 GRGYVLRRIMRRA-----MCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLLIEE 349
           GRGY+LR+I+RRA     +   +L    + L ++ L+P +   M  AYPEL++ +  IE+
Sbjct: 292 GRGYILRKIIRRAFGAGIVAKQKLEITKDDLFLYKLVPYVVENMKEAYPELVEKQEYIEK 351

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
            LR E ERF  TL  G+ +L   +  + K+ I  L+ D +FKLYDT GLP ++ + IL  
Sbjct: 352 VLRLEQERFALTLKNGIEMLTEEIEKMDKEGIKKLSADASFKLYDTFGLPFELTELILEN 411

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G   +    FNQ LEEQ  R++   + +     +       E++G T+F GY+     K
Sbjct: 412 QGYE-VSEEEFNQKLEEQVKRSKNSRVTVSDMIKDDFIDKFFEEHGKTEFTGYE-----K 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F  E +              +  I K+         E +SG   EV+FD+TPFYAE+GGQ
Sbjct: 466 FEDEGK--------------ILHIAKS---------EGISG--YEVIFDRTPFYAESGGQ 500

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSIN 586
           + DTG         ++ +V KK + +F+H   + +GI     + V + ID   R+ +  N
Sbjct: 501 VADTGIITSGEFEGKVVNVVKKHD-VFIHQVEILKGIAPAVGAEVKMKIDADRRKDIQRN 559

Query: 587 HSATHL 592
           H+ATH+
Sbjct: 560 HTATHI 565


>gi|320164762|gb|EFW41661.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 954

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 297/781 (38%), Positives = 419/781 (53%), Gaps = 78/781 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
            S++R  F++FF   GHE +PSSS+IP +DPTL+F N+GM  FK  F G   P      Y
Sbjct: 10  ASAVRQQFVDFFVSKGHEFVPSSSVIPHDDPTLLFANAGMNQFKPAFLGTADPNSRMAKY 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT  +
Sbjct: 70  RRTANSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKKEAISWAWELLTVVY 129

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T +        + D EA  +W  + GL A++++     +NFW M ETGPCG
Sbjct: 130 KLDPNRLYVTYFGGNEKAGLEADLEARDIWLSV-GLPAERVLPYGMKENFWEMGETGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI FD+   I GG   ++    +    +EIWNLVF+QF ++  Q    LP+  +DTG
Sbjct: 189 PCSEIHFDR---IGGGRDAAALVNADDPDVLEIWNLVFIQFNREVDQSLRKLPRCHVDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD D+F     A +  TG++     +         + +RV+ DH
Sbjct: 246 MGLERIVSVLQNKRSNYDTDVFVPYFTAIQAATGIRAYTGKVGADDTDGLDMAYRVVADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +  +ADG  P   GR YVLRR++RRA+ Y A  LG        L+  + T +G  +
Sbjct: 306 IRTLTIALADGGAPGPTGRDYVLRRVLRRAVRYCAEKLGAKPGFFASLVDVVGTSLGGFF 365

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL+++   I++ +  E+ +F KTLDRG  L +   +   K+ ++ G VA++LYDT+G P
Sbjct: 366 PELVRSPQDIKDIINEEEAQFRKTLDRGKRLFERAAA-ASKNGVIEGLVAWRLYDTYGFP 424

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF------SLKEK 451
           LD+ + ++ A     ID   F  A     + A+  S G      E +        +LK+K
Sbjct: 425 LDLTE-LMAAELKLTIDKPGFKIA----EADAKEASKGKVDEAEETVVLDVHNISALKDK 479

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE----EAVS 507
                    D      +  E+ K   +       + V SIV AI    E+V     E++ 
Sbjct: 480 ----GVPATDDSPKFNYRSENDKYTFE-------SAVGSIV-AIALGKELVSTVDFESLK 527

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH-AIVERG 563
           G KV +V D+T FYAE GGQ+ DTG A     +     I  V  K  G +V H   ++ G
Sbjct: 528 GAKVGIVLDKTNFYAEQGGQIFDTGFATRVDNEASEFAIESV--KVYGPYVLHVGRLQGG 585

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     L L+ID   R  +  NH+ TH+L+ AL  +LG+ V Q GS + PD  RFD +H
Sbjct: 586 SLSIGDKLTLSIDDIRRLPIMANHTTTHMLNFALREVLGNSVDQKGSLVRPDNFRFDFSH 645

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPV--VTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            K +++ EL+ IE  VNDII +N  V  V   ++    +A G  A+    Y D VRVVSV
Sbjct: 646 PKAVSTEELRKIEKIVNDIIEKNETVYRVPTALHLAKEVA-GLRAVFDEVYPDPVRVVSV 704

Query: 682 EYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                 +           +S   CGGTH+  T +     I  E  I  GIRRI  ITG+ 
Sbjct: 705 GVPVEKLLADPASASWKGYSIEFCGGTHIDRTRDARRFAIFREEGIAKGIRRISGITGKE 764

Query: 731 A 731
           A
Sbjct: 765 A 765


>gi|219124287|ref|XP_002182439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406400|gb|EEC46340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 955

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 311/941 (33%), Positives = 477/941 (50%), Gaps = 95/941 (10%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59
           +R TF  +F +++GH   PSS  +P +DPTL+FTN+GM  +K +F G   P      + +
Sbjct: 20  VRDTFKNYFVEQHGHVFWPSSPCVPVDDPTLLFTNAGMNQYKPLFLGTCDPNLEMSKLTR 79

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI +AW  LT  F 
Sbjct: 80  AVNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKAGAIDMAWQCLTVTFG 138

Query: 120 LDQRRLYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           LD  RLY T +  DE    DEEA +LW +   L  D+++     DNFW M  TGPCGPC+
Sbjct: 139 LDPERLYATYFAGDELTPVDEEARQLWLRY--LPDDRVLPFDARDNFWEMGATGPCGPCT 196

Query: 174 EIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           EI +D+       + +   LP         +EIWN+VF+Q+ ++       LP   +DTG
Sbjct: 197 EIHYDRIGGRDASKLVNADLPD-------VMEIWNVVFIQYNREADGSLRPLPAQHVDTG 249

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MG ER+ ++LQ   +NYD D+F  L  A + +TG +     +         + +RV+ DH
Sbjct: 250 MGFERLTSILQNVDSNYDTDIFIPLFTAIQNITGARPYAKKVGKEDPEYIDMAYRVVADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
           +R+  F I DG +P+N+GRGYVLRR++RRA+ Y R  LG        L+PA    MGSA+
Sbjct: 310 IRTLCFAITDGAVPSNDGRGYVLRRVLRRAVRYGRQNLGAELGFFAKLVPAFVDVMGSAF 369

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+++ +  +   ++ E+E F +TLD+GL   + +   +G D+I +G  A  LY + G P
Sbjct: 370 PEVVEKQEYVTGIIQEEEESFSRTLDKGLQKFNELAEKVGADQIFSGADAHFLYTSMGFP 429

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   +G+  ++   F   ++E+   ++A  L   +G + K    + E+   +  
Sbjct: 430 VDLTELMAEEKGMT-LNKEEFEAKMQEEHDISQAAHLAKMAGGSGKDMRLVAEQ--TSYL 486

Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           +G ++      +K++  +    C      +    +  +   V  G I  E+ +   V +V
Sbjct: 487 VGQNISATDDAAKYVWHEELADCVVKACFIGRNETEDMIGFV--GSISPESSA---VGIV 541

Query: 515 FDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFV-HHAIVERGILRTEMSLV 572
            D++ FYAEAGGQ+ D G      G  ++IT+VQ  A G FV H   V  G L    ++ 
Sbjct: 542 LDKSSFYAEAGGQVYDVGTLTSSTGAVVKITNVQ--AYGQFVLHLGEVASGTLSVGDTVK 599

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH------------VSQNGSCITPDGLRFD 620
            ++DY  R  ++ NH+ TH+L+HAL  +L               V Q GS +    LRFD
Sbjct: 600 CSVDYVRRAPIASNHTMTHVLNHALREVLIKRPEKESGKTSTLTVDQKGSLVDETKLRFD 659

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
            + S  +T  +L  +E    D I   +PV   +    DA   S   A+ G KY D VRVV
Sbjct: 660 FSWSGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVV 719

Query: 680 SVEYEDGGV--------------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +V   D  V              +S   CGGTH+++T E     +++E  I  GIRRI A
Sbjct: 720 AV--SDHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITA 777

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-----KLQ 780
           IT   A+  +   +E    L +   V   ++   V+++  E   L +   K+     +L 
Sbjct: 778 ITTGEAKKAIALANEFESKLTAAEVVQGDDLESTVKQLSAELDGLDIAAVKKMQFREQLA 837

Query: 781 LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
              + +  +K   +   S ++   D     K  KSVM A  K+++   ++LV    E   
Sbjct: 838 TMTKQVLAYKKQKLAGGSKVVMRFDFGVEGKVAKSVMTAFGKQVKDKALLLVTADPEADR 897

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLG-GGGGGGRPHMAQ 876
            ++I      +   N    A + A   G    GGG+P  AQ
Sbjct: 898 FMVIAGAPKAMKDLNC--KAWIEAATDGLDAKGGGKPDSAQ 936


>gi|238063896|ref|ZP_04608605.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885707|gb|EEP74535.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 636

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/643 (40%), Positives = 373/643 (58%), Gaps = 56/643 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + I+  +L  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y    
Sbjct: 2   KTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQTPPYPRAV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117
           +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL+T+      
Sbjct: 62  SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKAGAIPLAWDLVTRSVAEGG 117

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD  R++ TVY +D+EA ++W+ + G+ A++I+R    DNFWSM   GP GPCSE+++
Sbjct: 118 FGLDPERVWATVYLDDDEAAEIWRSV-GMPAERIVRRGKKDNFWSMGIPGPAGPCSELYY 176

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFI----LPKMSIDTGMGLE 231
           D+G    G   G   + +RY+E WNLVFMQ+E  +   +E F     LPK +IDTGMGLE
Sbjct: 177 DRGPDY-GREGGPEVDEDRYLEFWNLVFMQYEIADVTSKEDFRIVGELPKKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLRS 281
           RMA++LQ   N Y+ID  + ++  + ++TG +Y  +          + V  RVI DH+R+
Sbjct: 236 RMASILQGVDNLYEIDEVRPILARAAELTGKRYGAHSGHVAAQSHPDDVRLRVIADHVRT 295

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  +  LLP     M  +YPEL 
Sbjct: 296 ALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPELA 355

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPL 398
                I +   +E++ F  TL  G  +LD  ++     GK   L+GD AF+L+DT+G P+
Sbjct: 356 TEFDRIAQYAYAEEDAFLATLRAGTTILDTAIAETKSAGK-PALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GLA +D   F + + +QR+RA+A +    +G T+   + S+ +  G  +F
Sbjct: 415 DLTLEIAAEQGLA-VDADGFRRLMADQRARAKADARARKTGHTDLSAYRSVLDAGGPVEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY     ++  +E R                  V+A++  G+ V  AV G  VE+V D 
Sbjct: 474 TGY-----TELNRESR------------------VRAVLSGGDQVGAAVEGDTVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRARVVRGEVRAGENGYAEIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD
Sbjct: 571 TRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFD 613


>gi|303282971|ref|XP_003060777.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545]
 gi|226458248|gb|EEH55546.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545]
          Length = 972

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 275/780 (35%), Positives = 431/780 (55%), Gaps = 76/780 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            + IR TFL+FF+   H ++PSS ++P +DPTL+F N+GM  FK+IF G+  P       
Sbjct: 13  ANKIRQTFLDFFESKEHAVVPSSPVVPHDDPTLLFANAGMNQFKSIFLGKADPKGPLAKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
           +  T  QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG +FK  AI  AW+LLT + 
Sbjct: 73  KRATDTQKCIRAGGKHNDLDDVGKDTYHHTYFEMLGNWSFGDFFKREAIHWAWELLTSKE 132

Query: 118 -FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD+ RLY + +  DE        EA  +W ++  L  +K++     DNFW M + GP
Sbjct: 133 HYGLDESRLYASYFGGDESQGLPPDLEARDIWLEV--LPPNKVLPFGCEDNFWEMGDVGP 190

Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPCSEI +D+     GG   +   + +    +EIWN+VF+QF ++       LP   +D
Sbjct: 191 CGPCSEIHYDR----IGGRDAADLVNADDPNCLEIWNIVFIQFNREEGGVLKPLPAKHVD 246

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIV 276
           TGMG ER+A++LQ+K +NYD D+F  + +   +VTG          + EG   + +RV+ 
Sbjct: 247 TGMGFERIASILQDKMSNYDTDVFTPIFERIREVTGAPPYTGLLGAEDEGEKDMAYRVVA 306

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +F IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+  +    G 
Sbjct: 307 DHIRTLTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAEQGFFQKLVAVVVELFGH 366

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDT 393
            +PE+++ +  + + +  E+E FG+TL +G+     + +   +D   +++G  AF L+++
Sbjct: 367 VFPEIVKHEKRVTDIIADEEESFGRTLLKGIDQFKKIAAKAKEDGGAVVDGAAAFLLWES 426

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G P+D+ + +    G+  +D   F+ A +E + ++RA       G  +    SL  +  
Sbjct: 427 FGFPIDLTEIMAEENGMT-VDTAGFDAAFKEAQEKSRA-------GGKKSDGPSLLFEAE 478

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG----------VSSIVKAIVQQGEIVE 503
           AT ++  +   GSK+ K  + +      I  T+            S++VKAI+     VE
Sbjct: 479 ATSWLQKN---GSKWGKA-KDIAHAHDAIPFTDDSPKYDGPEADPSAVVKAILTLNGFVE 534

Query: 504 --EAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHA-I 559
             E V G  + +V D+T FYAE+GGQ+ D G     +G  L + +V K A G  +H    
Sbjct: 535 STEGVEG-PIGLVLDRTSFYAESGGQVCDVGVITTENGASLAVNEV-KVAAGFVLHSGER 592

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           VE   +    +    +DY  R  ++ NH+ TH+L+ AL ++LG  V Q GS +  + LRF
Sbjct: 593 VEGEAITVGNTCAARVDYDRRANIAPNHTMTHVLNFALRSVLGDGVDQKGSLVDDEKLRF 652

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRV 678
           D +H+KP+++ E+K +E+ V + +  +L V  R +   DA   SG  A+ G  Y D VRV
Sbjct: 653 DFSHNKPMSNNEIKRVEEIVRERVGASLAVDAREVALADAKTISGLRAVFGEVYPDPVRV 712

Query: 679 VSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           VSV             E+   +S   CGGTH+++T +     ++ E+ I  GIRR+ A T
Sbjct: 713 VSVGPTIDELLANPGSEEWTKYSIEFCGGTHLANTSQAEGFVLLEEAGIAKGIRRVVAAT 772


>gi|195577578|ref|XP_002078646.1| GD22412 [Drosophila simulans]
 gi|194190655|gb|EDX04231.1| GD22412 [Drosophila simulans]
          Length = 948

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 307/957 (32%), Positives = 474/957 (49%), Gaps = 91/957 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      +  V
Sbjct: 9   VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L 
Sbjct: 69  ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK  ID GMG E
Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282
           R+ +V+Q K +NYD DLF  L  A +  TG   Y+G    +++    + +RV+ DH R+ 
Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +G A+PE+ 
Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P+D+ 
Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     
Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +   +   K   + +  +       GV +S + A+  + + V E  SGQK  +V D+T F
Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536

Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L ID +
Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E  
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655

Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
             +++ +N+P+  +    + A+A    G  ++    Y D VR  +          S+   
Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRPANKP-------PSSFAA 706

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
              +  +G IM   I SE +I  GIRRI A+TG  A   L   +   + +         +
Sbjct: 707 APTLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIVRLKATIDND 766

Query: 756 VVGR-----VEEIWE----------------EYRKL------QLIHAKRKLQLNVEDLSC 788
             G+     V+EI E                E R L       L   +R L+  V     
Sbjct: 767 KSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAVSVTVV 826

Query: 789 HK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVL 839
            +   + + N  + ++ E      ++K L + +  ++ ++     M + +  + KK   L
Sbjct: 827 ERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDADSKKIFCL 886

Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+ +   + F
Sbjct: 887 SSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQLASKF 942


>gi|299751839|ref|XP_001830532.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130]
 gi|298409558|gb|EAU91282.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130]
          Length = 968

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 325/988 (32%), Positives = 493/988 (49%), Gaps = 133/988 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  F E+F+   H  + SS  IP +DPTL+F N+GM  +K+IF G   P      V +A
Sbjct: 16  VREEFFEYFRARDHTFVRSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSELSKVKRA 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLT+ + L
Sbjct: 76  FNS-QKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIKYSWDLLTRVYGL 134

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSM--------- 163
              RLY+T ++ D         EA + W  +  L  D+++     DNFW           
Sbjct: 135 SPDRLYVTYFEGDPANGLEPDLEAKECW--LEYLPEDRVLPGNAKDNFWGAWCHPPELDL 192

Query: 164 ----AETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQER 216
                  G      EI +D+     GG   +   +++    +EIWN VF+QF ++     
Sbjct: 193 ANRRGRDGRYRSLREIHYDR----IGGRQAAHLVNQDDPDVLEIWNNVFIQFNREPDGTL 248

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN---- 271
             LP   +DTGMG ER+ +V+Q+K +NYD D+F  +    ++++G++ YEG    +    
Sbjct: 249 KPLPAKHVDTGMGFERLVSVIQDKRSNYDTDVFTPIFAKIQELSGVRPYEGRFGADDADG 308

Query: 272 ----HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHL 325
               +RV+ DH+R+ +F ++DG +P N GRGYVLRR++RR   YAR  LG         L
Sbjct: 309 IDTAYRVVADHVRTLTFALSDGGVPNNVGRGYVLRRVLRRGSRYARKKLGVPIGSFFSSL 368

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEIL 382
           +P +   MG  +PE+ +    I+E L  E+E F +TLDRG  L D   +     G+ E+ 
Sbjct: 369 MPVVVETMGDIFPEITKKVDDIKEILDEEEESFSRTLDRGEKLFDQYAAKAKAEGRKELS 428

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
             DV ++LYDT+G P+D+ + +    GL GI+   F    EE + +++  S G     T 
Sbjct: 429 GADV-WRLYDTYGFPVDLTRLMAEELGL-GINDAEF----EEAQRKSKEASKGTAKKDTA 482

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG--- 499
           +I             +  D+   +   K+D            T  +++ VKAIV      
Sbjct: 483 EI-------------VKLDVHELAILEKDDSVPKTDDSAKFGTGNITATVKAIVYDKKFL 529

Query: 500 ----EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIF 554
               +I E+A  G    V+ D+T FYAE+GGQ  DTG  + DG    ++T+VQ    G  
Sbjct: 530 TSTQDIPEDATFG----VILDKTSFYAESGGQEYDTGNIVIDGAADFEVTNVQ-VYNGYV 584

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           VH   ++ G L     ++ + D   R  L  NH+ATH+L+ AL  +LG HV Q GS + P
Sbjct: 585 VHTGHLKYGQLDVGSEVISSYDELRRWPLRNNHTATHILNFALREVLGDHVDQKGSLVAP 644

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYN 673
             LRFD +H   IT  EL  IE    D I +N+ V  + ++   A    G  A+ G  Y 
Sbjct: 645 TKLRFDFSHKAGITLPELTKIESMSIDWIKKNVKVYGKDLDLNLAQKIPGLRAVFGETYP 704

Query: 674 DRVRVVSVEYEDGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           + VRVV++EY    +            S   CGGTHV+ TG+I    I  ES I  GIRR
Sbjct: 705 NPVRVVTLEYSVDEIAADIENPKWRQTSIEFCGGTHVAKTGDIKGFVITEESGIAKGIRR 764

Query: 723 IEAITGQRA----------------RSHLMG--QDEKLKSLASFLKVSQGNVVGRVE--- 761
           I A+TG  A                   L G  +D  LK+L   L  +  +V+ + E   
Sbjct: 765 IIAVTGHEAAEVTRVAQALEEKLNQADALDGKAKDAALKALTVELGQADISVLKKAELKD 824

Query: 762 ------EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSV 812
                 + +++  K +   A +K    +ED   H + + N   +++ + +  ++K L+S+
Sbjct: 825 KLNAMRKAFDKAVKEKEAAAGKKA---LEDFQKHFVENPNAQVYIALVEAGGNAKLLQSI 881

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGG 870
             A  +K +  I +    +++ K   +  V  +L  +   VD  + +AKV  L GG  GG
Sbjct: 882 ATA-ARKAEKSIYVFSHDAEQGKVPHVNYVAPNL--KAQGVDARQWAAKVTDLIGGKAGG 938

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +   AQ  G   +K  +AIA     ++K
Sbjct: 939 KEESAQGVGSEASKLQEAIAAARQHVEK 966


>gi|72389797|ref|XP_845193.1| alanyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62360052|gb|AAX80474.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801728|gb|AAZ11634.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261328581|emb|CBH11559.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 966

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 309/971 (31%), Positives = 482/971 (49%), Gaps = 126/971 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
           V+ +R  F+ FF++ GH  +PSS+++P NDPTL+FTN+GM  FKN+F G   P      +
Sbjct: 10  VNRVRQEFVSFFEQRGHTFVPSSAVVPHNDPTLLFTNAGMNQFKNLFLGTADPNTDFGRL 69

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +AV + Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI  +W+LLT+ 
Sbjct: 70  TRAVNS-QLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKREAILWSWELLTEV 128

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY T +        + DEE+ +LW ++  L A ++I     DNFW M + GPC
Sbjct: 129 YKLPKDRLYATYFEGDPANGIEADEESKQLWLQL--LPASRVIAGNAKDNFWEMGDVGPC 186

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI FD+     GG   +   +++    +E+WNLVFMQFE++       LPKM +DT
Sbjct: 187 GPCSEIHFDR----IGGRDAADLVNKDDPMVLEVWNLVFMQFERRAGGVIVPLPKMHVDT 242

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------VNHRVIVDH 278
           GMGLER+ ++LQ   +NYD D +  L    ++VTG +     +        V +R + DH
Sbjct: 243 GMGLERLTSILQGADSNYDTDAWTPLFDTIQKVTGFEKSYAEVRHDTCDATVAYRAVADH 302

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R  +  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ ++ + +G  +
Sbjct: 303 IRCLTVALADGAMPDSVGRGFVLRRIIRRAVRYGVQFLGAKVGFFHQLVDSVVSSLGPFF 362

Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
             + + + +  I+  L  E+  F +T + GL   +  ++    + +++G+ AF L+D +G
Sbjct: 363 KHIQEPRTVQRIKGVLADEETSFARTWETGLKHFNKAVAE-AVNNVISGENAFILHDRYG 421

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE----K 451
            P+D+   +L  +    +D+  F+  +       +A  L  G     K +  + +    K
Sbjct: 422 FPVDLTS-LLAEKANMSVDLEGFHATM-------KASQLSSGRVAAAKTFIDVHQLEELK 473

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G     G      S      + V   K   D  +G  S V  ++   E+  E +     
Sbjct: 474 AG-----GVSPTDDSAKYTWKKHVAEVKAIFDKKSG--SFVDVLLPDSEMGPEDIG---- 522

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFVHHA---IVERGI-- 564
            ++ D T FYAEAGGQ+ DTGC +       I DV+K     G  VH      VE G   
Sbjct: 523 -IILDVTNFYAEAGGQIYDTGCIV--AAPDAIFDVRKVYNVGGYIVHVGGMRSVEDGAAA 579

Query: 565 -LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPDG 616
            +    S+ L +DY+ R  ++ NH++TH+L+  L  +L          V+Q GS +TP+ 
Sbjct: 580 PIPVTASVELQVDYERRLPIAANHTSTHILNWCLRRVLEEEAKDNFMEVNQKGSLVTPEM 639

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDR 675
           LRFD +++  ++  +L  +E  +N II Q L V  + +  + A   +G   + G KY D 
Sbjct: 640 LRFDFSYNNKVSLEDLIKVEKLINQIIQQGLEVYRKEIALDAASRIAGLRHMFGEKYPDP 699

Query: 676 VRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V V+SV           E E+   +S+  CGGTH+S+T +  L  I+SE S+  GIRR+ 
Sbjct: 700 VSVISVGVPVEKLIAEPESEEWRAYSTEFCGGTHLSNTQDAQLAVILSEESLMKGIRRMV 759

Query: 725 AITGQRARSHLMG----------------QDEKLKSLASFLKVSQGNVVGRV------EE 762
             T   AR    G                 D   KSL+   K    + +  V      EE
Sbjct: 760 VATRDAARKAQEGGKALQQEYREIMSRPASDAVAKSLSVLNKKVGDSAIPLVVKNTLREE 819

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--------FMSHIISEVDSKE-LKSVM 813
           I    + +      +  Q+  +     + A            + H+      +E L++  
Sbjct: 820 IDGSIKNVLGALKAQAAQMKEKATEAGRAAAEAYDASAGPLLVRHLTDTGADREALQAYA 879

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRP 872
           D   K +   + + +  S E KA  L+ +    +  + +AV  A+ +      G GGG+P
Sbjct: 880 DGFSKAVSGDVGLFLVGSDESKALALVSLPPAFVAKKLDAVSWAKTAV-----GKGGGKP 934

Query: 873 HMAQSGGPNGN 883
             AQSG P  N
Sbjct: 935 SAAQSGFPAAN 945


>gi|289448204|ref|ZP_06437948.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium
           tuberculosis CPHL_A]
 gi|289421162|gb|EFD18363.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium
           tuberculosis CPHL_A]
          Length = 828

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 305/838 (36%), Positives = 454/838 (54%), Gaps = 57/838 (6%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKI 143
           FF+M  NFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW+++
Sbjct: 7   FFQMGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEV 66

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWN 202
           +GL A++I R    DN+WSM   GPCGP SEI++D+G E  P G P  SE+  RY+E+WN
Sbjct: 67  AGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWN 124

Query: 203 LVFMQFE------QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
           LVFMQ E      +++ Q    LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + ++   
Sbjct: 125 LVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTV 184

Query: 257 EQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
            +V    Y+ GN  + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+
Sbjct: 185 ARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAK 244

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           LLG    ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V 
Sbjct: 245 LLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVA 304

Query: 374 SHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           S   K    +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A
Sbjct: 305 SSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKA 363

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            +        +   +      GAT+F G+D LR S+       V  ++ P+ + +GV+  
Sbjct: 364 DAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG- 420

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQ 547
                        A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQ
Sbjct: 421 ------------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQ 468

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K A+ ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q
Sbjct: 469 KIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQ 528

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS   P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL
Sbjct: 529 AGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIAL 588

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G  Y D VRVV    E GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  
Sbjct: 589 FGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYV 644

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIH-AKRKLQLN 782
           G  +  HL  +   +  LAS LKV    V  RV  + E  R    +L+ +  A  +    
Sbjct: 645 GLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASVRAAAT 704

Query: 783 VEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                  +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   
Sbjct: 705 NAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYA 764

Query: 842 V-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           V      +DL  R N  DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 765 VAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 819


>gi|221485680|gb|EEE23961.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 1037

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 287/838 (34%), Positives = 416/838 (49%), Gaps = 107/838 (12%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60
           ++R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ     P+   + 
Sbjct: 28  AVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRR 87

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + +
Sbjct: 88  VADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKI 147

Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            + RLY + +           DEEA  +W  +  L A++++     +NFW MA+TGPCGP
Sbjct: 148 PKDRLYASYFGGDPRLPSCPPDEEARDIW--LQYLPANRVLPFGAKENFWEMADTGPCGP 205

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   SS    +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---------VNHRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L  +  E   G++  G  +         + +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-------TTEKIWFSL 448
            PLD+ Q +    GL  +D   F +  +  R+ +   S   G           ++   + 
Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500

Query: 449 KEKYGATQFIG---YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
             K   T       ++++  +  M +D     +  PI          K    +   V   
Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQD---AVEAAPIKAKVMAIWDGKRFAPEVTAVASP 557

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
                V V+ D+T FYAE GGQ+GD G    +      ++ D QK  + I +H   + +G
Sbjct: 558 TGENLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDFI-LHIGSMSKG 616

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL---------------------- 601
            LR    LV  +DY  R +L+ +H+ THLL+ AL  +L                      
Sbjct: 617 TLREGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNG 676

Query: 602 ---------------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
                          G  + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ 
Sbjct: 677 LRICESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQA 736

Query: 647 LPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------------EYEDGGVHSSA 692
            PV  + +  E A+   G  A+ G  Y D VRVVSV                +    S  
Sbjct: 737 RPVHYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIE 796

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRI---EAITGQRARSHLMGQDEKLKSLAS 747
           LCGGTH+ +  ++    I+SE S+  G+RR+          AR  L   +E  +SLAS
Sbjct: 797 LCGGTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLAS 854


>gi|221502948|gb|EEE28658.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 1037

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 287/838 (34%), Positives = 416/838 (49%), Gaps = 107/838 (12%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60
           ++R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ     P+   + 
Sbjct: 28  AVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRR 87

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + +
Sbjct: 88  VADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKI 147

Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            + RLY + +           DEEA  +W  +  L A++++     +NFW MA+TGPCGP
Sbjct: 148 PKDRLYASYFGGDPRLPSCPPDEEARDIW--LQYLPANRVLPFGAKENFWEMADTGPCGP 205

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   SS    +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---------VNHRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L  +  E   G++  G  +         + +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-------TTEKIWFSL 448
            PLD+ Q +    GL  +D   F +  +  R+ +   S   G           ++   + 
Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFKRKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500

Query: 449 KEKYGATQFIG---YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
             K   T       ++++  +  M +D     +  PI          K    +   V   
Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQD---AVEAAPIKAKVMAIWDGKRFAPEVTAVASP 557

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
                V V+ D+T FYAE GGQ+GD G    +      ++ D QK  + I +H   + +G
Sbjct: 558 TGENLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDFI-LHIGSMSKG 616

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL---------------------- 601
            LR    LV  +DY  R +L+ +H+ THLL+ AL  +L                      
Sbjct: 617 TLREGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNG 676

Query: 602 ---------------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
                          G  + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ 
Sbjct: 677 IRICESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQA 736

Query: 647 LPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------------EYEDGGVHSSA 692
            PV  + +  E A+   G  A+ G  Y D VRVVSV                +    S  
Sbjct: 737 RPVHYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIE 796

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRI---EAITGQRARSHLMGQDEKLKSLAS 747
           LCGGTH+ +  ++    I+SE S+  G+RR+          AR  L   +E  +SLAS
Sbjct: 797 LCGGTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLAS 854


>gi|237842821|ref|XP_002370708.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968372|gb|EEB03568.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 1037

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 295/855 (34%), Positives = 419/855 (49%), Gaps = 141/855 (16%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60
           ++R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ     P+   + 
Sbjct: 28  AVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRR 87

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + +
Sbjct: 88  VADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKI 147

Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            + RLY + +           DEEA  +W  +  L A++++     +NFW MA+TGPCGP
Sbjct: 148 PKDRLYASYFGGDPRLPSCPPDEEARDIW--LQYLPANRVLPFGAKENFWEMADTGPCGP 205

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   SS    +    +EIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261

Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---------VNHRVIVDH 278
           GLER+A+VLQ+K +NYD DLF  L  +  E   G++  G  +         + +RV+ DH
Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            R  +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +
Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G
Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +    GL  +D   F +  +  R+ +   S   G               GA 
Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFERKFDAHRAASENTSFKQGGA-------------GAV 487

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK--AIVQQGEIVEEAVSGQK--- 510
             +  D       + + RKV    PP D +      VK  A +   + VE A    K   
Sbjct: 488 YALPPD---QRHLLAQSRKV----PPTDDSAKYEWNVKDQAALMTQDAVEAAPIKAKVMA 540

Query: 511 ----------------------VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDV 546
                                 V V+ D+T FYAE GGQ+GD G    +      ++ D 
Sbjct: 541 IWDGKRFAPEVTAVASPTGENLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDS 600

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL----- 601
           QK  + I +H   + +G LR    LV  +DY  R +L+ +H+ THLL+ AL  +L     
Sbjct: 601 QKSGDFI-LHIGSMSKGTLREGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLR 659

Query: 602 --------------------------------GSHVSQNGSCITPDGLRFDVTHSKPITS 629
                                           G  + Q GS +    LRFD    KP+ +
Sbjct: 660 SGGKASANGDKREDTNGIRICESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLEN 719

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
            ++ ++E+ V D IAQ  PV  + +  E A+   G  A+ G  Y D VRVVSV       
Sbjct: 720 EDIIAVENVVKDCIAQARPVHYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESL 779

Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI---EAITGQRAR 732
                    +    S  LCGGTH+ +  ++    I+SE S+  G+RR+          AR
Sbjct: 780 VALADSSQPETPFASIELCGGTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEAR 839

Query: 733 SHLMGQDEKLKSLAS 747
             L   +E  +SLAS
Sbjct: 840 KELEELEEAFRSLAS 854


>gi|308485186|ref|XP_003104792.1| CRE-AARS-2 protein [Caenorhabditis remanei]
 gi|308257490|gb|EFP01443.1| CRE-AARS-2 protein [Caenorhabditis remanei]
          Length = 966

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 314/990 (31%), Positives = 486/990 (49%), Gaps = 133/990 (13%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56
            S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P      
Sbjct: 6   ASEVRSTFINFFKEKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAK 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           + +AV T QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT 
Sbjct: 66  LKRAVNT-QKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY++V+  DE        EA ++W+ + G+  ++I+     DNFW M + GP
Sbjct: 125 VYGIPSERLYVSVFGGDEATGVPADSEAREIWRSV-GVPDERILNFGMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CGPCSEI +D+ G      L  + +     +EIWNLVF+QF ++       LP   ID G
Sbjct: 184 CGPCSEIHYDRIGNRDASHLVNADD--PMVVEIWNLVFIQFNREEGGSLKTLPAKHIDCG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNHRVIVDH 278
           +GLER+  V+Q+KT+NYD D+F+ + QA  + +G++ Y G+          + +RV+ DH
Sbjct: 242 LGLERLIAVMQDKTSNYDTDIFQPIFQAINKGSGVRAYTGHIGDDDKDGIDMAYRVVADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337
           +R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+P + + +G  +
Sbjct: 302 IRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFASLVPVVISILGETF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGL 396
           PEL +    + + +  E+++F KTL RG VL    +  L    +   GDVA++LYDT+G 
Sbjct: 362 PELSRDPETVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDVAWRLYDTYGF 421

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P D+ Q +   +GL+ +D+ +F +        AR  ++   S  T K   +L     A  
Sbjct: 422 PADLTQLMAEEKGLS-VDLTAFEE--------ARKKAIETSSAGTGKFRDTLDLDVHALA 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVK---------AIVQQGEIVEEAV 506
               DL +      +D      K     T  G  ++ K         AI + G+ V+E V
Sbjct: 473 ----DLQQKGVPTTDD----TPKYAYSFTGEGADAVYKFEPCVGKILAIRRDGKFVDELV 524

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL- 565
           +G++  ++ D+T FYAE GGQ+ D G          +T V  ++    V +  V  G + 
Sbjct: 525 AGEEGAILLDRTNFYAEQGGQIYDVGV---------LTKVNDESNEFNVSNCQVRGGYIV 575

Query: 566 ---RTEMSLVLTIDY-----QNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
               +E +  +  D      ++R+QL + NH+ TH+L++AL  +L     Q GS + PD 
Sbjct: 576 LVGSSEGNFKIGDDVNQRFDEDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVAPDR 634

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR 675
           +RFD T+   +TS ++K  E+    +I     V  +     DA   +G  A+    Y D 
Sbjct: 635 MRFDFTNKAAMTSEQVKQAEEYAQQLINTKGQVYAKNSPLADAKKINGLRAMFDETYPDP 694

Query: 676 VRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           VRVV+V           +  +G   +   CGGTH+ +   I  + I SE +I  GIRRI 
Sbjct: 695 VRVVAVGTSVEQLLQNPDAPEGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIV 754

Query: 725 AITGQRA----------------------RSHLMGQDEKLKS----------------LA 746
           A+TG  A                         L+   +K K                 L 
Sbjct: 755 ALTGPEADRAIARADRLEARLVEESKHAKNQELLANKDKFKELQKKIQEIVDEANGALLP 814

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           S+ K S       V++  + Y K Q      K+    ++L+         +    S  +S
Sbjct: 815 SWRKDSLRKKAKDVQKDMDGYSKAQQAAVAEKVLGEAKELAAASEQPAVLVHVFTSNANS 874

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           K + + +  L+    +  +M   ++++  K   L  V + L+    A +       VL G
Sbjct: 875 KAIDNALKLLK---DTKAVMAFSVNEDTGKVLCLAKVDKSLVSSLKANEWVNEVCTVL-G 930

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           G GGG+   AQ  G N +K D A+     F
Sbjct: 931 GKGGGKDANAQLTGENVDKLDAAVELAQKF 960


>gi|302506663|ref|XP_003015288.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371]
 gi|291178860|gb|EFE34648.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371]
          Length = 954

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 321/968 (33%), Positives = 492/968 (50%), Gaps = 115/968 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P     +   +
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPN----SDFAQ 78

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             RA     DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY
Sbjct: 79  LKRAHNSQKDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 138

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCSEI +D
Sbjct: 139 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 197

Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+ +
Sbjct: 198 R----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVS 253

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLI 286
           +LQ K++NYD D+F  L  A + +TG + Y G       + I   +RV+ DHLR+ +F I
Sbjct: 254 ILQNKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAI 313

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344
            DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ + +
Sbjct: 314 TDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKRKQ 373

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTHGLPLD 399
             + E L  E+  F KTLDRG    +        S  GK   L+G   ++LYDT G P+D
Sbjct: 374 TDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTFGFPVD 430

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-----EKYGA 454
           + + +   R L  ID   F    EE R +A+  S G     ++ +  ++      EK G 
Sbjct: 431 LTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTLEKNGV 485

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511
            +         +KF K                 + + +KAI    E+++   +  + +++
Sbjct: 486 PK-----TDDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIPANEQI 525

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S
Sbjct: 526 GIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNFSVNDS 584

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ +
Sbjct: 585 VIAEYDELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDS 644

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +L+ IE    D I QN  V ++ +    A   +G  A+ G  Y D VRVVSV  E   + 
Sbjct: 645 DLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEIL 704

Query: 690 -----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------- 731
                      S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A       
Sbjct: 705 KNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVA 764

Query: 732 --------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLI 773
                   R   M     +D ++KSL   L       V +     +  +I ++    Q  
Sbjct: 765 REFGERLNRFEKMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKA 824

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGIS 831
             K +++  ++ +S +   + +  S +I    +   K++ ++L   K   SG  + V  +
Sbjct: 825 AQKAEVKTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAA 884

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K +    VT DL  +  +A + A   + ++GG  GG  P +A   G   NK D+A+ 
Sbjct: 885 DASKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKVDEALD 943

Query: 891 GVASFLKK 898
               +L+K
Sbjct: 944 EATKYLEK 951


>gi|298368683|ref|ZP_06980001.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282686|gb|EFI24173.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1021

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/383 (53%), Positives = 268/383 (69%), Gaps = 11/383 (2%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLI+DG++P+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVIADHIRSCSFLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L++
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHL 376
           E+ RFG+TL+ GL L D  LS +
Sbjct: 362 EESRFGQTLETGLKLFDDELSKV 384



 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 177/530 (33%), Positives = 275/530 (51%), Gaps = 59/530 (11%)

Query: 382  LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS--FNQALEEQRSRARAHSLGLGSG 439
            L G+  FKLYDT+G P D+  D+  AR L GID+    FN+ +E QR+RARA        
Sbjct: 535  LAGETIFKLYDTYGFPYDLTADM--AREL-GIDLDEEGFNREMEAQRARARAAQ------ 585

Query: 440  TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
               K    L      T+F GY+         ++ K++                 A+ +  
Sbjct: 586  -NFKANAQLDYTGADTEFTGYEK------RSQETKII-----------------ALYKGS 621

Query: 500  EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            E V+E  +G+   VV +QTPFYAE+GGQ+GD G       R ++ D QK    +      
Sbjct: 622  EAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGFIFAGENRFRVEDTQKIKAAVHGQFGA 681

Query: 560  VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            V  G L+   ++   ID   R  +  NHS THL+H AL  +LG+HV Q GS    +  RF
Sbjct: 682  VVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAELTRF 741

Query: 620  DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            D++H + I++ E+  +E  VN  I  N+PV    M+ EDA  SGA  L G KY D VRV+
Sbjct: 742  DISHPQGISAEEIAEVERRVNAAIIANVPVKVETMSIEDAQKSGAMMLFGEKYGDFVRVI 801

Query: 680  SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++     G +S+ LCGGTHV+ TG+I    I+SE  I AGIRR+EAITG  A +    Q+
Sbjct: 802  TM-----GDYSTELCGGTHVARTGDIGFFKIISEGGIAAGIRRVEAITGLAALAWAQNQE 856

Query: 740  EKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSC 788
              +K++ + +K  ++ +V+ +++      + L+           +HA  KL  + +DL  
Sbjct: 857  SLMKNIIAEVKAQTEKDVLAKIQANAANTKALEKELAKAKAELAVHAGAKLLDSAKDLGA 916

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             K+      S I  E D+  L+ ++  L  K  + +I+L  ++ + K S+   V++ L +
Sbjct: 917  AKLV----ASQI--EADAAALREIVTDLTGKSDNAVILLAAVN-DGKVSLCAGVSKPLTN 969

Query: 849  RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  A DL + +A+ + GG GGGRP +AQ+GG +  K  + +  V  ++ +
Sbjct: 970  KVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAVKLPEMLGSVEGWVSR 1018


>gi|319638074|ref|ZP_07992838.1| alanyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400719|gb|EFV81376.1| alanyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 964

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/383 (53%), Positives = 270/383 (70%), Gaps = 11/383 (2%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TTELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L  EMG+AYPEL + +  I E LR+
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGAAYPELKEKQTQIMEALRA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHL 376
           E+ RFG+TL++G+ L + VL+ +
Sbjct: 362 EESRFGETLEKGMGLFNQVLNGM 384



 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 176/527 (33%), Positives = 270/527 (51%), Gaps = 55/527 (10%)

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           ++ G+  FKLYDT+G P D+  D+    G+  +D   F + +E QR+RARA         
Sbjct: 477 VIGGEHIFKLYDTYGFPYDLTADMARELGIE-LDEAGFEREMEAQRARARAAQ------- 528

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           + K    L  +   T+F GY           +R+               S V A+ + GE
Sbjct: 529 SFKANAQLPYEGQDTEFKGYS----------ERQT-------------ESKVLALYKDGE 565

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V+E   G +  VV D TPFYAE+GGQ+GD G       R ++ D QK    +F    + 
Sbjct: 566 QVDELNEGDEGAVVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFGQFGVQ 625

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +  RFD
Sbjct: 626 TSGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGEHVEQKGSLVTAESTRFD 685

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           ++H + +T+ E+  +E  VN+ I  N+ V   IM+ EDA  +GA  L G KY D VRV+ 
Sbjct: 686 ISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSMEDAQKTGAMMLFGEKYGDEVRVLQ 745

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G  S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A      Q+ 
Sbjct: 746 M-----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQER 800

Query: 741 KLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCH 789
            +K + +  K  ++ +V+ +++      + L+           +HA  KL  + +DL   
Sbjct: 801 LVKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLGAA 860

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           K+           E D+  L+ ++  L  K +  I++LV ++ + K S+   V++ L  +
Sbjct: 861 KLV------AAQIEADAAALREIVTDLTGKSEQAIVLLVAVN-DGKVSLCAGVSKPLTGK 913

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A DL + +A+ + GG GGGRP +AQ+GG + +K  + +  V  ++
Sbjct: 914 VKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLPEMLVSVEGWV 959


>gi|260201682|ref|ZP_05769173.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T46]
          Length = 819

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 303/835 (36%), Positives = 450/835 (53%), Gaps = 57/835 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146
           M GNFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW++++GL
Sbjct: 1   MAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVF 205
            A++I R    DN+WSM   GPCGP SEI++D+G E  P G P  SE+  RY+E+WNLVF
Sbjct: 61  PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVF 118

Query: 206 MQFE------QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           MQ E      +++ Q    LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V
Sbjct: 119 MQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARV 178

Query: 260 TGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
               Y+ GN  + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG
Sbjct: 179 AARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLG 238

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
               ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V S  
Sbjct: 239 IDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASST 298

Query: 377 GKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            K    +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A + 
Sbjct: 299 KKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKADAA 357

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                  +   +      GAT+F G+D LR S+       V  ++ P+ + +GV+     
Sbjct: 358 ARKHAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG---- 411

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKA 550
                     A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A
Sbjct: 412 ---------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIA 462

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS
Sbjct: 463 KTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGS 522

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
              P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G 
Sbjct: 523 LNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGE 582

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y D VRVV    E GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  
Sbjct: 583 SYPDEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLD 638

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVED 785
           +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++           
Sbjct: 639 SFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAA 698

Query: 786 LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-- 842
               +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V  
Sbjct: 699 AGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAA 758

Query: 843 ---TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
               +DL  R N  DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 759 NPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 810


>gi|291229512|ref|XP_002734712.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 974

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 331/984 (33%), Positives = 506/984 (51%), Gaps = 132/984 (13%)

Query: 7   IRTTFLEFFQ-KNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           IR  F++FF+ K G  HE +PS+S++P +DPTL+FTN+GM  FK IF G   P      +
Sbjct: 8   IRQGFIDFFRNKKGLEHEFVPSNSVVPLDDPTLLFTNAGMNQFKPIFQGVVDPNSDMAKW 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   ++AW+LLT  +
Sbjct: 68  VRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCEMAWELLTDVW 127

Query: 119 DLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T +  DE      DEE  ++W  I GL  ++++  +  DNFW M + GPCG
Sbjct: 128 KLPKERLYVTYFGGDEKMGLGPDEECKQIWIDI-GLPPERVLPFSMRDNFWEMGDVGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI FD+     GG   +   + +    +E+WNLVFMQF ++       LPK +ID G
Sbjct: 187 PCSEIHFDR----IGGRDATHLVNMDDPNVLELWNLVFMQFNREPDGSIRPLPKKNIDCG 242

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           MGLER+ +VLQ K +NYD D+F     A  + TG++ Y+G       + I + +RV+ DH
Sbjct: 243 MGLERVISVLQGKMSNYDTDIFTPFFDAIHKGTGVREYQGKVGSEDTDGIDMAYRVVADH 302

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +  I+DG  P N GRGYVLRR++RR + YA   L         L+  +   +G A+
Sbjct: 303 IRTLTIAISDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAPSGFFASLVQVVLDTLGDAF 362

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           P + +   L+ + +  E+ +F KTL+RG  +L   ++ L + ++L G  A+ LYDT+G P
Sbjct: 363 PGIKKDPQLVIDIINEEEAQFLKTLNRGHRVLQRTINKL-ETKVLPGKAAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQ 456
           +D+ Q +    GL     I   +  EE++ + R   S G GSG  +              
Sbjct: 422 VDLTQLMAEENGLN----IDMGEYEEEKKKKLRFLLSQGKGSGVDDT------------- 464

Query: 457 FIGYDLLRGSKFMKEDRKVLC--QKPPIDLT----------NGVSSIVKAIVQQGEIVEE 504
            IG D+   S+ +++ RKV      P    T          N + + V A+ +  + V E
Sbjct: 465 -IGLDVHAISE-LQDTRKVSATDDSPKYSYTYDEQNSKYVFNAIVATVIALRKDKQFVSE 522

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVH----H 557
             +G +  ++ D+T FYAE GGQ+ D G    +    I  ++T+VQ K  G  +H     
Sbjct: 523 VDNGDECGMLLDKTCFYAEQGGQIWDEGFMEKENNPDIEFKVTNVQVKG-GYILHIGKLS 581

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           A+   G L+    + L ID   RR +  NH+ TH+L++AL  +LG    Q GS + PD L
Sbjct: 582 AVDSEGKLKVGDKMKLYIDEARRRPIMSNHTGTHMLNYALRKVLG-EADQKGSLVAPDKL 640

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYND 674
           RFD T    +T+ +++S E   N+++ ++ PV  +  N   A+A    G  A+    Y D
Sbjct: 641 RFDFTAKGAMTTEQVQSAEQITNEMVQKSQPVYAK--NSPLAVAKAIQGLRAVFDEVYPD 698

Query: 675 RVRVVS--VEYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            VRV+S  +  ED         G   S   CGGTH+ ++G I    IV+E +I  GIRRI
Sbjct: 699 PVRVISIGIPVEDMEADPSGPAGATTSIEFCGGTHLLNSGHIGPFVIVTEEAIAKGIRRI 758

Query: 724 EAITGQRARSHLMGQD---EKLKSLASFLKVSQGNVVGRVEEIWEE-------------- 766
            AITG  A+  +   D   E++  L   +K +    V   +E+ +E              
Sbjct: 759 VAITGDDAQKAINRADMLEEEIDKLTQKIKDNSTKQVYMPKELSKEIVSIGDDLNVAIVP 818

Query: 767 -YRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSH-----------IISEVDSKELK 810
            +RK  +    + L+  ++DL   +    I +V  M+            ++  +D+    
Sbjct: 819 QWRKDGMRKKLKDLKKIMDDLDKARKAAIIQNVKEMTKKLIEEKPNQPLVVMTLDADSNS 878

Query: 811 SVMDALQKKIQS----GIIMLVGISKEKKASVLI--VVTEDLLDRFNAVDLARLSAKVLG 864
             +DA  K+ ++       ML  + +E +  + +  V  E +     A +  R  +  L 
Sbjct: 879 KALDAALKEYRNLSPQTAAMLFSVDRENRKIICLCHVPQEGIAKGLKAGEWVRHVSSSL- 937

Query: 865 GGGGGGRPHMAQSGGPNGNKADQA 888
            G GGG+   AQ+ G N N  D+A
Sbjct: 938 NGKGGGKDSSAQASGDNINGLDEA 961


>gi|224001280|ref|XP_002290312.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
 gi|220973734|gb|EED92064.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
          Length = 966

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 278/780 (35%), Positives = 416/780 (53%), Gaps = 83/780 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV----- 61
           +R+TF+ +F++NGH    SS  +P +DPTL+FTN+GM  +K +F G   P  +       
Sbjct: 19  VRSTFISYFERNGHTFWRSSPCVPHDDPTLLFTNAGMNQYKPLFLGTCDPALKMASLKRA 78

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI++AW  LT+EF LD
Sbjct: 79  TNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEAIEMAWKCLTEEFKLD 138

Query: 122 QRRLYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY T +  DE    D+EA ++W  +  L A++++     DNFW M  TGPCGPC+EI
Sbjct: 139 PNRLYATYFGGDESTPCDDEAREIW--LQYLPAERVLPFDAKDNFWEMGATGPCGPCTEI 196

Query: 176 FFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            +D+       + +   LP         IEIWN VF+QF ++       LP   +DTGMG
Sbjct: 197 HYDRIGNRDASKLVNADLP-------DVIEIWNNVFIQFNREADGSLRPLPAQHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLR 280
            ER+ ++LQ   +NYD D+F  L  A +++TG +     I         + +RV+ DH+R
Sbjct: 250 FERLTSILQGVDSNYDTDIFIPLFDAIQKITGARPYAGKIEKEDPEFIDMAYRVVADHVR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + SF IADG +P+N+GRGYVLRR++RRA+ Y R  L         L+  L   MG  +PE
Sbjct: 310 TLSFAIADGAVPSNDGRGYVLRRVLRRAVRYGRQNLNAELGFFAQLVRTLVELMGDTFPE 369

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + +  +   +R E+E F KT+D+G+V  +     LG  ++  G+ A  LY + G P+D
Sbjct: 370 LREKEEYVTAIIREEEESFSKTVDKGIVEFNKRCDALGDVKVFPGEDAHFLYTSMGFPVD 429

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   RGL  +D+  ++  ++E++  + A  L   S  + K    + E+        
Sbjct: 430 LTELMCEERGLT-LDMEGYDAKMKEEQELSNAAHLAKMSAGSGKDMRLVAEQ------TS 482

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI------VQQGEIVEEAVSGQK--V 511
           + + +G     +D K +  +   DL     SI+KA+       + G    +++S +   V
Sbjct: 483 HLVNKGVDATNDDAKYVWNE---DLE---GSIIKALFIGRNETEDGIGFVDSISKENGAV 536

Query: 512 EVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHH-AIVERGILRTEM 569
            +V D+T FY E+GGQ  DTG      G  ++IT+VQ    G FV H   V  G +    
Sbjct: 537 GIVLDKTNFYGESGGQTFDTGSIKTSSGATIEITNVQ--IYGSFVLHIGDVTEGTVTVND 594

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTIL---------GSHVSQNGSCITPDGLRFD 620
           +    +DY  R  ++ NH+ TH+L+ AL  +L         G+ V Q GS +  + LRFD
Sbjct: 595 AATCCVDYVRRAPIAANHTMTHILNFALRDVLVTRGDADQHGASVDQKGSLVDENKLRFD 654

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
            + S P+T  +L ++E    D I   +PV   +   E A   S   A+ G  Y D VRVV
Sbjct: 655 FSWSGPLTPEQLVAVEKICVDQINSAVPVDNYVAPLEGAQQISSLRAVFGEVYPDPVRVV 714

Query: 680 SV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           +V            +      +S   CGGTH+ +T E     ++SE  I  G+RRI  +T
Sbjct: 715 AVSPSPITSMLENPQDAQWNKYSVEFCGGTHLKNTSEAQGFVLLSEEGIAKGVRRITGVT 774


>gi|229545937|ref|ZP_04434662.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|229309005|gb|EEN74992.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322]
          Length = 741

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 295/785 (37%), Positives = 440/785 (56%), Gaps = 75/785 (9%)

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-------PGGLPGSSE 192
           W+   GLS D II +   DNFW +   GP GP +EIF+D+GE         P   PG   
Sbjct: 1   WRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEEFLDIPEDDPENYPGG-- 55

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +++Q+   N++ DLF  +
Sbjct: 56  ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQDAPTNFETDLFMPI 115

Query: 253 IQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           I A E + T +KY       V+ +VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+
Sbjct: 116 IHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAV 175

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R+E+ERF +T++ GL +L
Sbjct: 176 MHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEEERFHETINEGLSML 235

Query: 370 DGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           + V+  +   K + L+G + FKLYDT G P+++ +++    GL  +D   F   +E QR 
Sbjct: 236 NEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLK-VDHAGFETEMEAQRE 294

Query: 428 RAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
           RAR A S     G    +   +K +   ++F+GY                      +LT+
Sbjct: 295 RARSARSKETSMGVQSALLTDIKVE---SKFVGY---------------------TELTH 330

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQI 543
                V  I+Q   +V EA +G   E++F +TPFYAE GGQ+ D G      GD +   +
Sbjct: 331 DSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIADRGYVKNTAGD-VVANV 386

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV+K   G F+H   V   +   ++   L +D + R ++  NH+ATHLLH AL  +LG 
Sbjct: 387 VDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNHTATHLLHRALKDVLGE 445

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +PVVT   + + A   G
Sbjct: 446 HANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMG 505

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY   VRVV++     G +S  LCGGTHV++T +I +  IVSES I AG+RRI
Sbjct: 506 AMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRI 560

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQL- 781
           EA+T + A   L  ++ +LK +A+ +K  Q   VV +     E+ ++      K   QL 
Sbjct: 561 EAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKT----EQLQQQLRDLQKENEQLA 616

Query: 782 ----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGISKE 833
               N +     K + DVN + +I ++V+ K   +L+ + D  ++K  S +++L   +++
Sbjct: 617 GKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKELSDVLVL-ATAQD 675

Query: 834 KKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +K S+L  +T+D+  +   A DL + ++ KV   GGGGGRP MAQ+GG N      A+A 
Sbjct: 676 EKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMAQAGGKNPAGIADALAE 733

Query: 892 VASFL 896
           V ++L
Sbjct: 734 VENWL 738


>gi|256077790|ref|XP_002575183.1| alanyl-tRNA synthetase [Schistosoma mansoni]
 gi|238660414|emb|CAZ31416.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 980

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 287/776 (36%), Positives = 408/776 (52%), Gaps = 74/776 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  F EFF+  GH  + SSS IP NDPTL+F N+GM  +K IF G   P       +  
Sbjct: 10  LRKQFFEFFESKGHVYVHSSSTIPHNDPTLLFANAGMNQYKPIFQGTVDPNSELGRLKRS 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ A + AW+LLT+ + + 
Sbjct: 70  YNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACEWAWELLTEVWKIP 129

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +          DEEA  +W  I GL  D ++     +NFW M ETGPCGPCS
Sbjct: 130 SERLYVTYFGGDISNGLPADEEARDIWISI-GLPKDHVLPFGMKENFWEMGETGPCGPCS 188

Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EI +D+ G+     L   +++    +EIWNLVF+QF ++       LP   IDTGMG ER
Sbjct: 189 EIHYDRVGDRDAAHL--VNQDDPDVLEIWNLVFIQFNREEGGSLKPLPAKHIDTGMGFER 246

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSSS 283
           + +VLQ K +NYD DLF  L +  E  T  + Y G   V         +RV+ DH R  +
Sbjct: 247 VLSVLQNKRSNYDTDLFVPLFKTIEAGTNTRPYTGKVGVEDTDKIDMAYRVLADHARVLT 306

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQ 342
             + DG    N GRGYV+RRI+RRA+ +A  +   +P  +  L  +  E +G  +PE+ +
Sbjct: 307 IALGDGGRAQNTGRGYVIRRILRRAVRFAVEVLNAKPGFLATLVDIVIETLGDTFPEITR 366

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPL 398
               I+E +  E+E+F  TL RG    D V+  L      +  L+G+VA+ LY+T+G PL
Sbjct: 367 DPDTIKELINEEEEQFLVTLKRGRRFFDRVIKDLKASGSNNTTLSGEVAWGLYETYGFPL 426

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKY---- 452
           D+ Q IL       ID+  + +A EE + R+++     GS    T      LK K     
Sbjct: 427 DLTQ-ILAEEHHLKIDLNGYEKAKEEAQIRSQSRKCTGGSIIDLTVHALAELKSKNISVT 485

Query: 453 -GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQK 510
             + +F+    L G+    +                  + V AI+ + + VE   +S Q 
Sbjct: 486 DDSEKFVYTSDLNGNYVFPDSE----------------ATVLAILYENKFVESVDLSSQM 529

Query: 511 VEVVFDQTPFYAEAGGQLGDTG--CAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRT 567
             ++ ++T FYAE+GGQL D G   ++ D +    ++DVQ    G ++ H     G L  
Sbjct: 530 CGIILNKTIFYAESGGQLYDHGFITSLTDEVTEFSVSDVQ--CRGGYILHIGNLHGKLIV 587

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              ++L++D   R  L  NH+ TH+L+ AL  ++     Q GS + PD LRFD T  + +
Sbjct: 588 GNRVLLSLDTVRRTALMRNHTGTHVLNFALRELV-DESEQKGSLVAPDRLRFDFTAKRGM 646

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV----- 681
           T  EL   E+  + +I++ L V +  ++   A    G  A+ G  Y D VRVVS+     
Sbjct: 647 TRDELAKAEEICDTMISKRLNVYSSNVSLSYAKTIQGVRAVFGEAYPDPVRVVSIGVPVT 706

Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 E   G   S   CGGTHV +T  I +L IVSE +I  G+RRI A+TG  A
Sbjct: 707 SLVADPETGYGKTTSVEFCGGTHVLNTKHIGVLVIVSEEAISKGVRRIIALTGHEA 762


>gi|311257039|ref|XP_003126924.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 769

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 276/746 (36%), Positives = 400/746 (53%), Gaps = 66/746 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV- 61
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 62  ----TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK SIDT
Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDT 240

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVD 277
           GMGLER+ +VLQ K +NYD DLF    +A ++ TG + Y G    +        +RV+ D
Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLAD 300

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A
Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDA 360

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G 
Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +
Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPID--LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
                  RG +   +  K           +     + V A+ +    VEE  +GQ+  VV
Sbjct: 473 L----RERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQECGVV 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            D+T FYAE GGQ+ D G  +       D     + + Q +  G +V H     G L+  
Sbjct: 529 LDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGSLKVG 586

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    ++
Sbjct: 587 DQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----E 682
           + ++K  E+  N++I    PV  +      A A  G  A+    Y D VRVVS+     E
Sbjct: 646 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 705

Query: 683 YED------GGVHSSALCGGTHVSST 702
             D      G + S   CGGTH+ ++
Sbjct: 706 LLDDPSGPAGSLTSVEFCGGTHLQNS 731


>gi|195867853|ref|ZP_03079852.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|195660430|gb|EDX53688.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
          Length = 906

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 284/947 (29%), Positives = 474/947 (50%), Gaps = 103/947 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ +  
Sbjct: 6   TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D +
Sbjct: 66  SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE  
Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + Q
Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287
           +   N+D D+F  + ++ EQ +  KY+ N         N +N  ++VI DH+R++ F IA
Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346
           DG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K L
Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359

Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++I
Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            C +    +D+ +F+   +  +  S+A   +L +     E +      +        Y++
Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            R                        + I+    +  E+V + +  +   VVFD T FYA
Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ 
Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N++
Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699
           +  N  V    M+ ++A A GAAA     Y     ++RV+ +    G   S  LCGGTH 
Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740
             T EI  + IV  +S  AG  RI  +TG                      +++L   D 
Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794
           KL  L +     +   +   + + E++ +L+      K++ + ++ +   I D+      
Sbjct: 740 KLNDLYNAFANWKNLSIEDYDLLNEKFTELKQTLINFKIEFDKQN-AKQAIIDIKNTFNA 798

Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E      N
Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856

Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L +   ++  +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|171920911|ref|ZP_02932062.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554598|ref|YP_002284771.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|171903130|gb|EDT49419.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542099|gb|ACI60328.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 906

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 283/947 (29%), Positives = 474/947 (50%), Gaps = 103/947 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ +  
Sbjct: 6   TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D +
Sbjct: 66  SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE  
Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + Q
Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287
           +   N+D D+F  + ++ EQ +  KY+ N         N +N  ++VI DH+R++ F IA
Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346
           DG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K L
Sbjct: 300 DGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359

Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++I
Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            C +    +D+ +F+   +  +  S+A   +L +     E +      +        Y++
Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            +                        + I+    +  E+V + +  +   VVFD T FYA
Sbjct: 470 FKWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ 
Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N++
Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699
           +  N  V    M+ ++A A GAAA     Y     ++RV+ +    G   S  LCGGTH 
Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740
             T EI  + IV  +S  AG  RI  +TG                      +++L   D 
Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794
           KL  L +     +   +   + + E++ +L+      K++ + ++ +   I D+      
Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQN-AKQAIIDIKNTFNA 798

Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E      N
Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856

Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L +   ++  +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|238022662|ref|ZP_04603088.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147]
 gi|237865865|gb|EEP67001.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147]
          Length = 963

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/379 (53%), Positives = 267/379 (70%), Gaps = 11/379 (2%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL+FFQ  GH+++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TNELRAKFLQFFQSKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+  I  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +W  + G+ A++I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 KEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG++P+
Sbjct: 243 AAVMQGVHSNYEIDLFQDLLKAVARETGTAFSMEE-PSLKVIADHIRSCSFLIADGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL + +  I E LR 
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVLRG 361

Query: 354 EDERFGKTLDRGLVLLDGV 372
           E+ RFG+TL++G+ L + V
Sbjct: 362 EEMRFGETLEKGMGLFNQV 380



 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 176/524 (33%), Positives = 271/524 (51%), Gaps = 49/524 (9%)

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           I++G+  FKLYDT+G P D+  D+    G+  +D   F + +E QR+RARA         
Sbjct: 476 IMSGEHIFKLYDTYGFPYDLTADMARELGIE-LDEEGFEREMEAQRARARAAQ---NFKA 531

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
             ++ +   E    TQF GYD                 K  +D T      V A+ + GE
Sbjct: 532 NAQVAYDGAE----TQFHGYD-----------------KRSLDAT------VLALYRDGE 564

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V E  +G+   VV D TPFYAE+GGQ+GD G       R ++ D QK    +  H   +
Sbjct: 565 AVNELNAGESGIVVLDHTPFYAESGGQVGDVGFIFSGENRFEVEDTQKIKAAVHGHFGTL 624

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G L+   S+   +D   R  +  NHS THL+H AL  +LG+HV Q GS    +  RFD
Sbjct: 625 VSGSLKVGDSICAEVDNVVREAIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAELTRFD 684

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           ++H + IT+ E+  +E  VN  I QN+PV    M+ EDA  SGA  L G KY D VRV++
Sbjct: 685 ISHPQAITAEEIAEVERRVNHAIMQNVPVRVETMSLEDAQKSGAMMLFGEKYGDFVRVIT 744

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G +S+ LCGGTHV+ TG+I    I+SE  I AGIRR+EAITGQ A   +  Q+ 
Sbjct: 745 M-----GDYSTELCGGTHVARTGDIGFFKIISEGGIAAGIRRVEAITGQAALDWVQNQEN 799

Query: 741 KLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----- 793
            +K   + +K +QG  +++ +++      + L+   A+ K +L V   +  K+ D     
Sbjct: 800 LIKEAVNEVK-AQGAKDLLAKIQTALAHSKALEKELARAKAELAVH--AGAKLLDNAVTV 856

Query: 794 -VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +     E D+  L+ ++  L  K  + +++L  ++ + K ++   V++ +  +  A
Sbjct: 857 GAARLVAAQIEADAAALRDIVTDLTSKGDNIVVLLAAVN-DGKIALCAGVSKAMTAKVKA 915

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            DL + +A+ + GG GGGRP +AQ+GG +  K    I  V  ++
Sbjct: 916 GDLVKHAAEQI-GGKGGGRPDLAQAGGSDVEKLPAMIESVKDWV 958


>gi|188024171|ref|ZP_02996895.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518577|ref|ZP_03004033.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524540|ref|ZP_03004530.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273661|ref|ZP_03206196.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551130|ref|ZP_03772076.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|188018805|gb|EDU56845.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997839|gb|EDU66936.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659576|gb|EDX52956.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249689|gb|EDY74470.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378945|gb|EEH01310.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 906

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 286/947 (30%), Positives = 477/947 (50%), Gaps = 103/947 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ +  
Sbjct: 6   TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D +
Sbjct: 66  SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE  
Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + Q
Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287
           +   N+D D+F  + ++ EQ +  KY+ N         N +N  ++VI DH+R++ F IA
Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346
           DG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K L
Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359

Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++I
Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            C +    +D+ +F+   +  +  S+A   +L +     E    SL +    + F  Y++
Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNE----SLMQLDVDSTF-HYEI 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            +                        + I+    +  E+V + +  +   VVFD T FYA
Sbjct: 470 FKWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ 
Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N++
Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699
           +  N  V    M+ ++A A GAAA     Y     ++RV+ +    G   S  LCGGTH 
Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740
             T EI  + IV  +S  AG  RI  +TG                      +++L   D 
Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794
           KL  L +     +   +   + + E++ +L+      K++ + ++ +   I D+      
Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQN-AKQAIIDIKNTFNA 798

Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E      N
Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856

Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L +   ++  +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|260187569|ref|ZP_05765043.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
          Length = 819

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 303/832 (36%), Positives = 451/832 (54%), Gaps = 57/832 (6%)

Query: 95  NFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           NFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW++++GL A+
Sbjct: 4   NFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAE 63

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQF 208
           +I R    DN+WSM   GPCGP SEI++D+G E  P G P  SE+  RY+E+WNLVFMQ 
Sbjct: 64  RIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQN 121

Query: 209 EQ---QNKQERFIL---PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
           E+     K++  IL   P+ +IDTGMG+ER+A VLQ+  N Y+ DL + ++    +V   
Sbjct: 122 ERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTVARVAAR 181

Query: 263 KYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE 319
            Y+ GN  + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG   
Sbjct: 182 AYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDA 241

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
            ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V S   K 
Sbjct: 242 AIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKS 301

Query: 380 --EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
              +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +    
Sbjct: 302 GATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKADAAARK 360

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
               +   +      GAT+F G+D LR S+       V  ++ P+ + +GV+        
Sbjct: 361 HAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG------- 411

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGI 553
                  A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ +
Sbjct: 412 ------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTL 465

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           +VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS   
Sbjct: 466 WVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNR 525

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G  Y 
Sbjct: 526 PGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYP 585

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           D VRVV    E GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  
Sbjct: 586 DEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFR 641

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIH-AKRKLQLNVEDLSC 788
           HL  +   +  LAS LKV    V  RV  + E  R    +L+ +  A  +          
Sbjct: 642 HLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASVRAAATNAAAGA 701

Query: 789 HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV----- 842
            +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V     
Sbjct: 702 QRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPA 761

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +DL  R N  DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 762 AQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 810


>gi|67925719|ref|ZP_00519029.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501]
 gi|67852440|gb|EAM47889.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501]
          Length = 615

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/621 (39%), Positives = 370/621 (59%), Gaps = 41/621 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+F+ +  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ++  +   TT QK
Sbjct: 13  IRDRFLQFYSQYKHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKQSDFPRATTSQK 71

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L    + 
Sbjct: 72  CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYQLPPENIV 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V++ D+EAFK+W++I G+   +I R+   DNFW    TGPCGPCSE+++D    + G 
Sbjct: 128 VSVFENDDEAFKMWEEIIGVPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL-GD 186

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                E+  R+IE +NLVFM++ +    +   L   +IDTGMGLERMA +LQ+  NNY+ 
Sbjct: 187 DDIDLEDDSRFIEFYNLVFMEYNRDADGKLTPLQNKNIDTGMGLERMAQILQKVPNNYET 246

Query: 247 DLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   +I+ +  +  + Y+       V+ +VI DH+RS   +I+D I  +N  RGYVLRR
Sbjct: 247 DLIFPIIETAANIANINYQKATEKTKVSLKVIGDHVRSVVHMISDNITASNTDRGYVLRR 306

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR + + RL+G     +  +          AYP++ +    I+  L  E+  F KTL+
Sbjct: 307 LIRRVVRHGRLIGIEGKFINEVAETAIQLSQKAYPQVRERDSFIKAELEREEATFLKTLE 366

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG  LL  ++S   K   ++G  AF LYDT G PL++ Q+I     L  +DI  F   +E
Sbjct: 367 RGEKLLAEIISKTEKQGQISGVDAFTLYDTFGFPLELTQEIAEESNLT-VDIEGFEVEME 425

Query: 424 EQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +Q+ R++A   ++ L   G+ +K    L E    T+F+GY  L+                
Sbjct: 426 QQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYTDLQS--------------- 466

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   ++ V+A++ +G+ VE A +G ++++V D+TPFY E+GGQ+GD G   G+ + 
Sbjct: 467 --------TAKVEAVLIEGKSVETATAGTEIQIVLDKTPFYGESGGQIGDRGFLTGEDLV 518

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ DVQK++ GIFVH   VERG +     L  TID   RR++  NH+ATHL   AL  +
Sbjct: 519 IRVDDVQKES-GIFVHFCRVERGQVSVNEHLKATIDRSCRRRVQANHTATHLFTAALKKV 577

Query: 601 LGSHVSQNGSCITPDGLRFDV 621
           +   +SQ GS    D L+FD+
Sbjct: 578 VDDSISQAGSLGDFDRLKFDL 598


>gi|225550618|ref|ZP_03771567.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379772|gb|EEH02134.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 906

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 286/947 (30%), Positives = 476/947 (50%), Gaps = 103/947 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ +  
Sbjct: 6   TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D +
Sbjct: 66  SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE  
Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + Q
Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287
           +   N+D D+F  + ++ EQ +  KY+ N         N +N  ++VI DH+R++ F IA
Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346
           DG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K L
Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359

Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++I
Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            C +    +D+ +F+   +  +  S+A   +L +     E    SL +    + F  Y++
Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNE----SLMQLDVDSTF-HYEI 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            R                        + I+    +  E+V + +  +   VVFD T FYA
Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ 
Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N++
Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699
           +  N  V    M+ ++A A GA A     Y     ++RV+ +    G   S  LCGGTH 
Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAVAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740
             T EI  + IV  +S  AG  RI  +TG                      +++L   D 
Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794
           KL  L +     +   +   + + E++ +L+      K++ + ++ +   I D+      
Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQN-AKQAIIDIKNTFNA 798

Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E      N
Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856

Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L +   ++  +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|325136739|gb|EGC59339.1| alanyl-tRNA synthetase [Neisseria meningitidis M0579]
 gi|325201730|gb|ADY97184.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325208526|gb|ADZ03978.1| alanyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 989

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/419 (50%), Positives = 281/419 (67%), Gaps = 14/419 (3%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 3   TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT     ++ 
Sbjct: 63  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+LP+
Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  I E LR+
Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEALRA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ RFG+TL++G+ L + V + L  ++I   D+  K +    +  DI  D+   R   G
Sbjct: 362 EESRFGETLEKGMGLFNQVYNELKFNQIF--DLLAKEFKVTPVE-DIDLDMFSTRNFVG 417



 Score =  253 bits (647), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 265/526 (50%), Gaps = 55/526 (10%)

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           LNG+  FKLYDT+G P D+  DI   R +  +D   F + +E QR+RARA         +
Sbjct: 503 LNGEHIFKLYDTYGFPYDLTADICRERNIE-LDEAGFEREMEAQRTRARA-------AQS 554

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
            K    L      T+F GY           +R+               S V A+ + GE 
Sbjct: 555 FKANAQLPYDGQDTEFKGY----------SERQT-------------ESKVLALYKDGEQ 591

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V E   G +  +V D TPFYAE+GGQ+GD G       R ++ D QK    +F    +  
Sbjct: 592 VNELNEGDEGAIVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFGQFGVQT 651

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +  RFD+
Sbjct: 652 SGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGGHVEQKGSLVTAESTRFDI 711

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H + +T+ E+  +E  VN+ +  N+ V   IM+ EDA  +GA  L G KY + VRV+ +
Sbjct: 712 SHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM 771

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A      Q+  
Sbjct: 772 -----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQERL 826

Query: 742 LKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHK 790
           +K + +  K  ++ +V+ +++      + L+           +HA  KL  + +DL   K
Sbjct: 827 VKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLGAAK 886

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           +           E D+  L+ ++  L  K  + +I+L  ++ + K S+   V++ L  + 
Sbjct: 887 LV------AAQIEADAAALREIVTDLTGKSDNAVILLAAVN-DGKVSLCAGVSKPLTGKV 939

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A DL + +A+ + GG GGGRP +AQ+GG +  K    +  V  ++
Sbjct: 940 KAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKLPAVLDSVKDWV 984


>gi|329120448|ref|ZP_08249113.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327461906|gb|EGF08236.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 992

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/379 (53%), Positives = 265/379 (69%), Gaps = 11/379 (2%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FFQ  GH  + SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   TT
Sbjct: 33  TSELRQKFLDFFQSKGHTAVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRATT 92

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+  I  AW+ LT     ++ 
Sbjct: 93  AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLNIP 152

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +W  + G+ A++I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 153 KEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPCTE 212

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG+PGS EE G+R+IEIWN VFMQF +  +     LPK S+DTGMGLERM
Sbjct: 213 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 272

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG++P+
Sbjct: 273 AAVMQGVHSNYEIDLFQDLLKAVARETGTAFSMEE-PSLKVIADHIRSCSFLIADGVMPS 331

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL + +  I E LR 
Sbjct: 332 NEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVLRG 391

Query: 354 EDERFGKTLDRGLVLLDGV 372
           E+ RFG+TL++G+ L + V
Sbjct: 392 EEMRFGETLEKGMGLFNQV 410



 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 265/515 (51%), Gaps = 55/515 (10%)

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           I++G+  FKLYDT+G P D+  D+    G+  +D   F + +E QR+RARA         
Sbjct: 506 IMSGEHIFKLYDTYGFPYDLTADMARELGIE-LDEEGFEREMEAQRARARAAQ---NFKA 561

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
             ++ +   E    TQF GYD                 K  +D T      V A+ + GE
Sbjct: 562 NAQVAYDGAE----TQFHGYD-----------------KRSLDAT------VLALYRDGE 594

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V +  +G+   VV D TPFYAE+GGQ+GD G       R  + D QK    +  H   +
Sbjct: 595 AVNQLNAGEAGIVVLDHTPFYAESGGQVGDVGFIFSGKNRFAVEDTQKIKAAVHGHFGTL 654

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G L+   S+   +D   R  +  NHS THL+H AL  +LG+HV Q GS    +  RFD
Sbjct: 655 VSGSLKVGDSICAEVDNAVREAIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAELTRFD 714

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           ++H + I++ E+  +E  VN  I  N+PV    M+ EDA  SGA  L G KY D VRV++
Sbjct: 715 ISHPQGISAEEIAEVERRVNAAIIANVPVKVETMSIEDAQKSGAVMLFGEKYGDFVRVIT 774

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G +S  LCGGTHV+ TG+I    I+SE  I AGIRR+EAITG  A +    Q+ 
Sbjct: 775 M-----GDYSIELCGGTHVTRTGDIGFFKIISEGGIAAGIRRVEAITGLAALAWAQNQES 829

Query: 741 KLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCH 789
            +K++ + +K  ++ +V+ +++      + L+           +HA  KL  N +DL   
Sbjct: 830 LMKNIIAEVKAQTEKDVLAKIQANAANTKALEKELAKAKAELAVHAGAKLLDNAKDLGTA 889

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           K+           E D+  L+ ++  L  K  + +I+L  ++   K S+   V++ L ++
Sbjct: 890 KLVAAQ------IEADAAALREIVTDLTGKSDNAVILLAAVNN-SKVSLCAGVSKPLTNK 942

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
             A DL + +A+ + GG GGGRP +AQ+GG + ++
Sbjct: 943 VKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQ 976


>gi|255084804|ref|XP_002504833.1| alanyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226520102|gb|ACO66091.1| alanyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 945

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 274/760 (36%), Positives = 406/760 (53%), Gaps = 70/760 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61
           IR TFL+FF+   H ++PSS ++P +DPTL+F N+GM  FK  F G   P       +  
Sbjct: 12  IRQTFLDFFEGKEHTVVPSSPVVPHDDPTLLFANAGMNQFKPCFLGTADPKGPLAKLKRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FKE AI  AW+LLTK + L 
Sbjct: 72  TDTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKEEAIGWAWELLTKVYMLP 131

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY T +          D+EA ++W K   L   K++     DNFW M + GPCGPC+
Sbjct: 132 EDRLYATYFGGDPAQGLPPDDEAKEIWLKY--LPPHKVLPFDCKDNFWEMGDVGPCGPCT 189

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   S   + +    +EIWN+VF+QF ++       LP   +DTGMG 
Sbjct: 190 EIHYDR----IGGRDASDLVNMDDPNCLEIWNVVFIQFNREEGGVLKPLPAKHVDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
           ER+A++LQ K +NYD D+F  +  A + VTG +           G   + +RV+ DH+R+
Sbjct: 246 ERLASILQGKMSNYDTDVFMPIFDAIQAVTGAEPYAGKLGAEDVGEKDMAYRVVADHVRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +F IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+  +    G  +PE+
Sbjct: 306 LTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFATLVKTVVQLFGDVFPEI 365

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397
           ++ +  + E +  E+E FG+TL +G+     + +     G+D + +G  AF L+++ G P
Sbjct: 366 VKEEKRVTEIIAEEEESFGRTLLKGVEQFKKIAAKAKEEGRDTV-SGAEAFLLWESFGFP 424

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+++ I+C      +D   F +A +E + ++RA       G   ++ F  +    AT +
Sbjct: 425 VDLVE-IMCEENGMKVDNAGFEEAFKEAQEKSRAAG---KKGGGRQLLFEAE----ATAW 476

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--EAVSGQKVEVVF 515
           +  +   G     +  K      P        + VKAI+     VE  E V G  + +V 
Sbjct: 477 LANN---GVPLTDDSHKYAAGSVP-------EATVKAILTLDGFVESTENVEG-PIGLVL 525

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE+GGQ+ D G  I  G      +  K A G  +H      G +    ++   +
Sbjct: 526 DKTSFYAESGGQVCDVG-VIKSGSASATVEDTKVAAGFVLHSCDSVDGAVAVGDAVRCLV 584

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY  R  +  NH+ TH L++AL  +LG  V Q GS +  + LRFD +HSK +T  E++ +
Sbjct: 585 DYDRRANIMPNHTMTHCLNYALRRVLGDSVDQKGSLVDDEKLRFDFSHSKAMTPDEIEKV 644

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EY 683
           E  V D +   L V TR +    A   SG  A+ G  Y D VRVVSV             
Sbjct: 645 EALVRDQVNAKLAVHTREVALAKAKEISGLRAVFGEVYPDPVRVVSVGPSIDDLLGAPAS 704

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ED   +S   CGGTH+++T +     ++SE  I  G+RRI
Sbjct: 705 EDWKGYSIEFCGGTHLANTSDAADFVLLSEEGIAKGVRRI 744


>gi|170590129|ref|XP_001899825.1| Alanyl-tRNA synthetase [Brugia malayi]
 gi|158592744|gb|EDP31341.1| Alanyl-tRNA synthetase, putative [Brugia malayi]
          Length = 962

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 316/968 (32%), Positives = 472/968 (48%), Gaps = 113/968 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  F+ FF+   H  + SSS+IP +DPTL+F N+GM  +K IF G  +P      + +A
Sbjct: 9   VRAAFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSSEMAKLKRA 68

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLTK   +
Sbjct: 69  VNT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWELLTKVLGI 127

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY++ +        D DEE  ++W  I G+    I+     DNFW M + GPCGPC
Sbjct: 128 PGERLYVSYFGGDEKTGLDADEECRQIWLNI-GVPPSHILSFGMKDNFWEMGDVGPCGPC 186

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEI +D+ G      L  + +     +EIWNLVFMQF ++       LP+  ID G+G E
Sbjct: 187 SEIHYDRVGNRDASHLVNADD--PMVVEIWNLVFMQFNREEDGSLKQLPRKHIDCGLGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+  VLQ K +NYD D+F  L  A    T ++     +         + +RVI DH+R+ 
Sbjct: 245 RLVAVLQNKLSNYDTDIFTPLFXAIHNGTKVRPYSGKVGADDVDGIDMAYRVIADHIRTL 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341
           S  ++DG  P N GRGYVLRRI+RR + YA       P  +  L+P +   +G  +PEL 
Sbjct: 305 SIALSDGGRPDNTGRGYVLRRILRRGVRYANEKLSAPPGFLSSLVPTVVNLLGKTFPELH 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    + + +  E+++F KTL RG  L    ++ L    IL GDVA++LYDT+G PLD+ 
Sbjct: 365 KDPQAVMDIINDEEKQFLKTLSRGRTLFQKAVAGLQGHNILPGDVAWRLYDTYGFPLDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEKYGAT 455
           Q +   RGL    ++ F +  E  R +A   S    +   + I         LK K G  
Sbjct: 425 QLMAEERGL----LVDF-EVFENCRQKAAGISAAHANKMRDTIDLDVNAISELKNK-GIP 478

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                   +      ED++ L              I+ A+ +    ++   SG    ++ 
Sbjct: 479 ATDDSPKYKYYALSSEDQQTLYN------FEKCEGIILALRKDKIFLDTLNSGDFGALIL 532

Query: 516 DQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           D+T FYAE GGQ+ DTG    +  G    +++VQ +  G  V    VE G L     ++ 
Sbjct: 533 DRTNFYAEQGGQIFDTGVLTEVDKGSEFIVSNVQIRG-GYVVLVGTVE-GQLCVGDKVIQ 590

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   R  +  NH+ TH+L+ AL  ++G  V Q GS + PD LRFD+T  +P+T  +++
Sbjct: 591 AIDEDRRNLIMKNHTGTHVLNFALRKVIG-EVEQKGSLVAPDRLRFDLTAKQPLTYEQIR 649

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----------EY 683
            +E     +I  N  V  + +   +A        L   Y D VR+VSV          + 
Sbjct: 650 MVEKESQMLIDTNATVFAKNVPLAEARQING---LRAAYPDPVRIVSVGIPIEELLRNKD 706

Query: 684 EDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            D  V+++   CGGTH+ + G I  L I  E +I  GIRRI A+TG  A   +   D   
Sbjct: 707 SDLAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRLE 766

Query: 743 KSLA-SFLKVSQGNVVG-----------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           + +  +  K++  ++V            RV E++EE  + QL +  RK  +  +  +  K
Sbjct: 767 QRVEDAHHKITTDHMVNLDKAQFKAATKRVLELFEEINQSQLPYC-RKESIRKKAKALQK 825

Query: 791 IADVN----------------------------FMSHIISE-VDSKELKSVMDALQKKIQ 821
           + D++                            F  H+ S+  + K L S + ++ K   
Sbjct: 826 LLDMHDREAKAVLADKVRCEASELDSSLKDGTLFTVHVFSKGANGKVLDSALKSITK--- 882

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S  IM   +S + K   +  V++D+  +   A +      +VL G GGG     AQ+ G 
Sbjct: 883 SHAIMGFSVSDDGKVVAVARVSKDVASKGLQASEWISRVCQVLDGRGGGTITQ-AQATGN 941

Query: 881 NGNKADQA 888
           N    ++A
Sbjct: 942 NAELVEEA 949


>gi|66816759|ref|XP_642382.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74856597|sp|Q54Y20|SYAC_DICDI RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|60470104|gb|EAL68084.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 946

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 276/789 (34%), Positives = 412/789 (52%), Gaps = 95/789 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +V+ IR TF++FF +K  H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P     
Sbjct: 2   DVNQIRKTFIDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQA 61

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            + +AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 62  KLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW  +  L  ++++     +NFW M + G
Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLW--LQYLPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           PCGPCSEI +D+ E    G  G+S    +    IEIWNLVF+Q+ ++  +    LP+  +
Sbjct: 179 PCGPCSEIHYDKVE----GRDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHV 234

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVN--HRV 274
           DTGMGLER+ +++Q+   NYD D+F  +  A ++VTG           E    V+  +RV
Sbjct: 235 DTGMGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRV 294

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEM 333
           I DH+R+ +F IADG  P+ +GRG VLRRI+RRA+ Y +  L         L+  +    
Sbjct: 295 IADHIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVIANF 354

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G  +PEL +    I+  L  E++ F KTL++G+V  + ++     +  L+ + A+ L   
Sbjct: 355 GEFFPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTC 413

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQ----RSRARAHSLGLGSGTTEKIWFSLK 449
           +G P+D+   I+       +DI  +    E Q    R R +   + L  G     W    
Sbjct: 414 YGFPIDLTT-IMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAW---- 468

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
                        L+ +     D     ++      + + S++KAI    E V+ A  G 
Sbjct: 469 -------------LKNNDIKPTDDSFKYKQ------HEIQSVIKAIWNGKEFVDTAPKGT 509

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVH--HA 558
            + VV + + FYAE GGQ+ D G       +L   D QK A          G  +H  + 
Sbjct: 510 LIGVVLENSNFYAEQGGQIYDIG-------QLSFIDDQKTAFDVKDCKVFGGYVLHIGYL 562

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             E   L+    + LT+DY  R  +  NH++TH++++AL  ILG  + Q GS +     R
Sbjct: 563 SYECDSLKVGDRVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFR 622

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
           FD +  + IT  EL  I+  VND I + L V  + +    A   +G  A+ G  Y D VR
Sbjct: 623 FDFSFGRAITKDELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVR 682

Query: 678 -----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                      + +    +   +S   CGGTH+S+T +  L  I SE ++ AG+RRI A+
Sbjct: 683 VVSVGVPVEQLIENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAV 742

Query: 727 TGQRARSHL 735
           TG  A S +
Sbjct: 743 TGSEAASAI 751


>gi|6176440|gb|AAF05592.1|AF188717_1 alanyl-tRNA synthetase [Dictyostelium discoideum]
          Length = 946

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 276/789 (34%), Positives = 412/789 (52%), Gaps = 95/789 (12%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +V+ IR TF++FF +K  H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P     
Sbjct: 2   DVNQIRKTFIDFFREKYEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQA 61

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            + +AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 62  KLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW  +  L  ++++     +NFW M + G
Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLW--LQYLPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           PCGPCSEI +D+ E    G  G+S    +    IEIWNLVF+Q+ ++  +    LP+  +
Sbjct: 179 PCGPCSEIHYDKVE----GRDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHV 234

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVN--HRV 274
           DTGMGLER+ +++Q+   NYD D+F  +  A ++VTG           E    V+  +RV
Sbjct: 235 DTGMGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRV 294

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEM 333
           I DH+R+ +F IADG  P+ +GRG VLRRI+RRA+ Y +  L         L+  +    
Sbjct: 295 IADHIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPTGFFSKLVDVVIANF 354

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G  +PEL +    I+  L  E++ F KTL++G+V  + ++     +  L+ + A+ L   
Sbjct: 355 GEFFPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTC 413

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQ----RSRARAHSLGLGSGTTEKIWFSLK 449
           +G P+D+   I+       +DI  +    E Q    R R +   + L  G     W    
Sbjct: 414 YGFPIDLTT-IMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAW---- 468

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
                        L+ +     D     ++      + + S++KAI    E V+ A  G 
Sbjct: 469 -------------LKNNDIKPTDDSFKYKQ------HEIQSVIKAIWNGKEFVDTAPKGT 509

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVH--HA 558
            + VV + + FYAE GGQ+ D G       +L   D QK A          G  +H  + 
Sbjct: 510 LIGVVLENSNFYAEQGGQIYDIG-------QLSFIDDQKTAFDVKDCKVFGGYVLHIGYL 562

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             E   L+    + LT+DY  R  +  NH++TH++++AL  ILG  + Q GS +     R
Sbjct: 563 SYECDSLKVGDRVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFR 622

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
           FD +  + IT  EL  I+  VND I + L V  + +    A   +G  A+ G  Y D VR
Sbjct: 623 FDFSFGRAITKDELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVR 682

Query: 678 -----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                      + +    +   +S   CGGTH+S+T +  L  I SE ++ AG+RRI A+
Sbjct: 683 VVSVGVPVEQLIENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAV 742

Query: 727 TGQRARSHL 735
           TG  A S +
Sbjct: 743 TGSEAASAI 751


>gi|185178972|ref|ZP_02964729.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|184209253|gb|EDU06296.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
          Length = 906

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 285/947 (30%), Positives = 476/947 (50%), Gaps = 103/947 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ +  
Sbjct: 6   TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D +
Sbjct: 66  SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE  
Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + Q
Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287
           +   N+D D+F  + ++ EQ +  KY+ N         N +N  ++VI DH+R++ F IA
Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346
           DG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + M   Y  L   K L
Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMSDFYTYLKDEKTL 359

Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++I
Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            C +    +D+ +F+   +  +  S+A   +L +     E    SL +    + F  Y++
Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNE----SLMQLDVDSTF-HYEI 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            +                        + I+    +  E+V + +  +   VVFD T FYA
Sbjct: 470 FKWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ 
Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N++
Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699
           +  N  V    M+ ++A A GAAA     Y     ++RV+ +    G   S  LCGGTH 
Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740
             T EI  + IV  +S  AG  RI  +TG                      +++L   D 
Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794
           KL  L +     +   +   + + E++ +L+      K++ + ++ +   I D+      
Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQN-AKQAIIDIKNTFNA 798

Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E      N
Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856

Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L +   ++  +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|156054306|ref|XP_001593079.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980]
 gi|154703781|gb|EDO03520.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 936

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 320/971 (32%), Positives = 480/971 (49%), Gaps = 148/971 (15%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL FF+K+ H ++PSSS++P NDPTL+FTN+GM  FK IF G           + +
Sbjct: 15  VRKEFLNFFEKHAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLG----TVGKTDDMAQ 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             RA     DLD+VG+ + HH+                 AI +AW+LLTK + LD  RLY
Sbjct: 71  LKRAVDTQKDLDDVGKDSYHHS----------------DAIAMAWELLTKVYGLDPDRLY 114

Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++         D EA +LW K +G+  D I+     DNFW M ETGPCGPCSEI +D
Sbjct: 115 VTYFEGDSENNVPADTEAKELWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCSEIHYD 173

Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +   I GG   +   +++    +EIWN+VF+QF++Q  +    LP   IDTGMG ER+ +
Sbjct: 174 R---IGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERLVS 230

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRSSSFLI 286
           VLQ+K++NYD D+F  L    ++VT       KY  ++       +RVI DH+R  +F I
Sbjct: 231 VLQDKSSNYDTDVFSPLFAKIQEVTQARPYTDKYGKDDTDGIDTAYRVIADHIRLLTFAI 290

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344
           +DG +P NEGRGYV+RR++RR   YAR     E       +LPAL  +MG  +PE+++ +
Sbjct: 291 SDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVKKQ 350

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQ 402
             ++E L  E+E F +TLDRG  + +   +   K     L+G   ++LYDT G P D+ +
Sbjct: 351 QDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDLTK 410

Query: 403 DILCARGLA---GIDIISFNQALEEQRS-RARAHSLG------------LG-SGTTEKIW 445
            +   RGL    G   I+  +A E  +S +  AH+              +G + T +   
Sbjct: 411 IMAEERGLETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQIAELDNIGIARTNDDAK 470

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
           FS  +  G  Q I YD   G  F+K    +   KP                         
Sbjct: 471 FSKGDSTGKVQLI-YD---GKSFLKSTADLPSDKP------------------------- 501

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGI 564
                  ++ D+T FYAE GGQ+ DTG  I DG+   ++ D Q    G  VH+  ++ G 
Sbjct: 502 -----FGILLDKTNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYG-GYIVHNGYMDYGN 555

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
            +    ++   D   R+ +  NH+ TH+L+HAL   LG  ++Q GS +  + LRFD +H 
Sbjct: 556 FKAGDEVICEYDELRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHK 615

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683
             +T  ELK IED+ N  I QN  + ++ ++ + A A  G  A+ G  Y + VRVVSV  
Sbjct: 616 AQVTLPELKKIEDSSNSYIKQNCKIYSKDVDLDTAKAIEGVRAVFGETYPNPVRVVSVGV 675

Query: 684 E-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---- 728
           E           +    S   CGGTHV  TG I  L IV ES I  GIRRI A TG    
Sbjct: 676 EIDVLLAEPKNPEWRKVSVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAH 735

Query: 729 --QRARS-------------HLMGQDEKLKSLASFLKVSQGNVVGRVE----------EI 763
             QR  S             H + +++++K+  + L     +V+ + +          ++
Sbjct: 736 EIQRVASEFGKRIAALDAMPHGVEKEQEVKATQNDLNHLTISVLTKEDLKKKFTKVQKDV 795

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +E +K Q   +K  L       +  K  D + +++ +    +SK +  VM+  + K + 
Sbjct: 796 LDEQKKKQKAESKTALDTVTAHFADPKNKDSIAYIAQLPISANSKAIAEVMNHFKSKAKE 855

Query: 823 GIIMLVGISKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG-G 879
             + L G S  + A V  + V T+      +A   A   ++V+GG  GG  P   ++G G
Sbjct: 856 KTVYLFGGSASEGAVVHGVYVGTDAASKGVSAEQWAAAVSEVIGGRSGGKEP--TRTGQG 913

Query: 880 PNGNKADQAIA 890
            N +K D A+A
Sbjct: 914 TNADKIDDAVA 924


>gi|60594334|pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With Atp And Magnesium
 gi|60594335|pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With Atp And Magnesium
 gi|60594336|pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With L-Alanine
 gi|60594337|pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With L-Alanine
 gi|60594338|pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
           Trna Synthetase In Complex Wtih Glycine
 gi|60594346|pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
           Synthetase In Complex With L-Serine
          Length = 465

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/457 (45%), Positives = 298/457 (65%), Gaps = 14/457 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T+ QK
Sbjct: 8   IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L + +LY
Sbjct: 68  CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLY 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE   G 
Sbjct: 128 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG- 186

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                   ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +N++I
Sbjct: 187 -------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEI 239

Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV+RRI
Sbjct: 240 DIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF KTL  
Sbjct: 300 LRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKA 359

Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           G+  +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F   L
Sbjct: 360 GMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGFQCEL 418

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           EEQR RAR H   + +   + ++  LKE    + F+G
Sbjct: 419 EEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVG 454


>gi|242556759|pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
           Synthetase In Complex With L-Serine: Re-Refined
          Length = 464

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/457 (45%), Positives = 298/457 (65%), Gaps = 14/457 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T+ QK
Sbjct: 7   IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 66

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L + +LY
Sbjct: 67  CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLY 126

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE   G 
Sbjct: 127 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG- 185

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                   ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +N++I
Sbjct: 186 -------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEI 238

Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV+RRI
Sbjct: 239 DIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRI 298

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF KTL  
Sbjct: 299 LRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKA 358

Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           G+  +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F   L
Sbjct: 359 GMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGFQCEL 417

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           EEQR RAR H   + +   + ++  LKE    + F+G
Sbjct: 418 EEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVG 453


>gi|154288058|ref|XP_001544824.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1]
 gi|150408465|gb|EDN04006.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1]
          Length = 910

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 322/973 (33%), Positives = 464/973 (47%), Gaps = 162/973 (16%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P     T    
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 63  -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++         D EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PARLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           EI +D+     GG   S   +++    +EIWN VF+Q+ ++  +    LP   +DTGMG 
Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGY 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281
           ER+ ++LQ K++NYD D+F  L     ++TG + Y G       + I   +RV+ DH+R+
Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFGKISEITGCRPYTGKFHDEDTDGIDTAYRVVADHVRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE
Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVL-----LDGVLSHLGKDEILNGDVAFKLYDTH 394
           + + +  + E L  E+  F KTLDRG  L     L       GK   L+G   ++LYDT 
Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGK---LHGADVWRLYDTF 428

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL  ID    N   EE R +A+  S G G  T + +  ++      
Sbjct: 429 GFPVDLTRLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKRTADVVKLTV------ 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKV 511
                +DL  G     ED     +       N ++S +KAI      V+       G++ 
Sbjct: 478 -----HDL--GLLETMEDVPKTNEDAKFGRGN-ITSQIKAIYYNKNFVDSTKHIPQGEQF 529

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ  DTG  I DG   L + DVQ   +GI  + ++V    LR + S
Sbjct: 530 GIILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVLGDGIEHNGSLVAAEKLRFDFS 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
                                                               H   ++ +
Sbjct: 590 ----------------------------------------------------HKSAVSDS 597

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED-- 685
           +L+ IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVS  VE E+  
Sbjct: 598 DLEKIERISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEIL 657

Query: 686 GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
             VH       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A       
Sbjct: 658 QNVHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIA 717

Query: 739 DEKLKSLASFLKVSQGN----------------VVGRVE-------------EIWEEYRK 769
            E  + L  F K+  G                  +  VE             ++ E  + 
Sbjct: 718 KEFGERLRRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKA 777

Query: 770 LQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            Q + +K+ L       +   +K+A    M   IS  + K L   ++ ++ K+Q   + +
Sbjct: 778 AQKLESKKALDAITGYFEAPENKVAPHLVMQLPIS-ANPKALSDSLNFVKTKMQDKSVYV 836

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAV--DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               KE    V        L    A   D A   + ++GG  GG  P ++   G    K 
Sbjct: 837 FAADKEAGKVVHGCHVAQALSEQGATPNDWANTVSSIVGGRAGGKAP-ISIGNGTEAEKL 895

Query: 886 DQAIAGVASFLKK 898
           D+AI     +L+K
Sbjct: 896 DEAIKAATEYLEK 908


>gi|58268868|ref|XP_571590.1| alanine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134113024|ref|XP_774788.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257434|gb|EAL20141.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227825|gb|AAW44283.1| alanine-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1012

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 276/776 (35%), Positives = 405/776 (52%), Gaps = 72/776 (9%)

Query: 4   VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + +R TF+++F       H   PSS ++P +D TL+F N+GM  +K +F G   P  + 
Sbjct: 62  AAKVRQTFIDYFVNQPGFEHTFWPSSGVVPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121

Query: 61  VTTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  A+ +AWDLLT
Sbjct: 122 SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVGALTMAWDLLT 181

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + L + RLY+T +        + D EA ++W+ + G+    I+     DNFW M  TG
Sbjct: 182 RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240

Query: 168 PCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           PCGPCSEI FD+     GG   +   + +    +EIWN VF+Q+ ++   E   LP   +
Sbjct: 241 PCGPCSEIHFDR----IGGRDAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHV 296

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVI 275
           DTGMG ER+ +VL   ++NYD D+F  +    +++TG + YEG       + I   +RVI
Sbjct: 297 DTGMGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVI 356

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA--RLLGYTEPLMMHLLPALCTEM 333
            DH+R+ +  I+DG +P  +GRGYVLRR++RR + YA  +           L+P +   +
Sbjct: 357 ADHIRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESL 416

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLY 391
           G  +PE+ +    + E L  E+  F +TL+RG  L +   +     K  +L+G   ++LY
Sbjct: 417 GPIFPEVTKKIPELTEILNEEEASFARTLNRGEALFNKYATTAIDEKRTVLSGKDIWRLY 476

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+D+ Q +   RGL  ID  +F +A  E    ++A                 KEK
Sbjct: 477 DTYGFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGG---------------KEK 520

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSG 508
            GA   +  D+   +     D             + + + VK+I    + +    E    
Sbjct: 521 AGA--LVKLDVHDLAALEANDAVPKTDDSFKYHLDDIKANVKSIYHGSKFLNSTSELPPN 578

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567
               ++ D+T FYAE+GGQ  DTG    DG    ++ DVQ    G  +H   +E G +  
Sbjct: 579 TTFGILLDRTNFYAESGGQEYDTGVIAIDGKAEFKVEDVQ-VYNGYVLHIGRMEEGDIEI 637

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              ++ T D   R  +  NH+ TH+L+ AL  +LG H+ Q GS + P  LRFD +H K I
Sbjct: 638 GDEVICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSI 697

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--- 683
              EL  IE   ND I + +PV  + M   +A    G  A+ G  Y D VRVVS+ Y   
Sbjct: 698 AVPELIKIEGICNDWIKRGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVSLGYPLE 757

Query: 684 ------EDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 ED     +++  CGGTHV+ T +I    I+ ESSI  GIRRI A+TG  A
Sbjct: 758 DIAKNVEDSKWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDA 813


>gi|224047577|ref|XP_002187191.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial [Taeniopygia
           guttata]
          Length = 986

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 299/889 (33%), Positives = 445/889 (50%), Gaps = 103/889 (11%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           IR  FL FF+ ++GH  LPS+ + P  DP L+F N+GM  FK IF G   P      Y+ 
Sbjct: 36  IRAAFLRFFEERHGHRRLPSAPVRPRGDPRLLFVNAGMNQFKPIFLGTVHPRSELAQYRR 95

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW+LLT+ +++
Sbjct: 96  VVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTEVYEI 155

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +          DEE   +W  + G+ A  ++     DNFW M +TGPCGPC
Sbjct: 156 PRDRLYVTYFGGDPSLGLSADEECRDVWLHL-GVPASHVLPFPLKDNFWEMGDTGPCGPC 214

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +EI +D    + GG   ++   +     +EIWNLVFMQ+ ++ +     LP+  +DTGMG
Sbjct: 215 TEIHYDH---VGGGRNAAALVNQGSPDVVEIWNLVFMQYSREVEGNLLPLPQHHVDTGMG 271

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE---GNNIVN-----HRVIVDHLR 280
           LER+ TVLQ K ++YD DLF  ++ A  +V    +Y+   GN  V      +RV+ DH+R
Sbjct: 272 LERLVTVLQNKRSSYDTDLFTPILDAIHKVCRAPRYQGLVGNADVGRVNMAYRVVADHVR 331

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           +    I DGI P   G   VLRRI+RRA+ +   +    P L+  L+P +   +G AYPE
Sbjct: 332 TLCVCITDGIYPGFSGAELVLRRILRRAVRFCSEVLQAPPGLLASLVPTVVEVLGDAYPE 391

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +    I++ L   +  F  +L+RG  +++  +  +        +VA+ LY + G PLD
Sbjct: 392 LTRNANQIKDILNENEAAFLSSLERGRRIIERTVQQMEPSTNFPAEVAWSLYGSLGFPLD 451

Query: 400 IMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQF 457
           ++  +L  +G++ +D  +FN+ ALE+ + +A     G  G+  T     SL         
Sbjct: 452 LIDLMLEEKGIS-LDSAAFNKLALEDAKRKAGGPQAGQTGTANTRLDVHSLA-------- 502

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSG 508
                L+GS     D       P    T G+          + V  + +   + +E  +G
Sbjct: 503 ----WLQGSSVPTTD-----DSPKYTYTLGLHGQYEFSPCQATVLMLYKDQSLHKEVGAG 553

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-----FVHHAIVERG 563
           Q+  V+ D+T FYAE GGQ  D G      IRL   DV    E +     +V H +    
Sbjct: 554 QRCGVILDRTNFYAEQGGQDSDQGYM----IRLGQQDVLFPVESVHLCGGYVIHEVTAVE 609

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            LR    + L +D   R     NH+ATHLL  AL  +LG    Q GS +T   LRFD   
Sbjct: 610 TLRAGDQVQLFVDEAQRLACMRNHTATHLLSFALRRVLGDSTEQRGSHVTAQQLRFDFDT 669

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSV 681
              +T  +L+ +E  V D+I +N   V  +      +A     L  +  +Y D VR+VS+
Sbjct: 670 KGHVTVEQLQQVEQVVRDLIQKN--EVVHMAEVPLTLARRVQGLRAVDEEYPDPVRIVSL 727

Query: 682 EYEDGGV----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 V           S  LC GTH+  TG +  L I+SE  +  GI R+ A+TG RA
Sbjct: 728 GVPVENVLTCDSKAAMQTSVELCCGTHLLQTGSVEDLAIISERQLVKGISRVIAVTGGRA 787

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           +        + + +   L V   +V  R+++      ++  I   + L   V  L+  K+
Sbjct: 788 K--------EAREVGQCLAVEVDSVSLRMKQ------RITSIPEMQNLSKEVGQLT--KV 831

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
                 S  + +   KEL++++ ALQ+   + I  L     EK A +L+
Sbjct: 832 V----ASTAMPQWQRKELQTILKALQRTANTAIKKLELQQAEKVAQILL 876


>gi|268561116|ref|XP_002646367.1| C. briggsae CBR-ARS-2 protein [Caenorhabditis briggsae]
 gi|187029911|emb|CAP31121.1| CBR-AARS-2 protein [Caenorhabditis briggsae AF16]
          Length = 967

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 276/777 (35%), Positives = 418/777 (53%), Gaps = 70/777 (9%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56
            S +R+TF+EFF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P      
Sbjct: 6   ASEVRSTFIEFFREKKNHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAK 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           + +AV T QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT 
Sbjct: 66  LKRAVNT-QKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY++V+  DE        EA ++W+ + G+  ++I+     DNFW M + GP
Sbjct: 125 VYGIPAERLYVSVFGGDEANGVPADSEAREIWRSV-GVPEERILNFGMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CGPCSEI +D+ G      L  + +     +EIWNLVF+QF ++       LP   ID G
Sbjct: 184 CGPCSEIHYDRIGNRDASHLVNADD--PMVVEIWNLVFIQFNREEGGALKSLPAKHIDCG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           +GLER+  V+Q+KT+NYD D+F+ + +   + +G++    +I         + +RV+ DH
Sbjct: 242 LGLERLIAVMQDKTSNYDTDIFQPIFEEITKKSGVRAYTGHIGDEDKDGVDMAYRVVADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337
           +R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+P + + +G  +
Sbjct: 302 IRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFAALVPVVISILGDTF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGL 396
           PEL +  + + + +  E+++F KTL RG VL    +  L    +   GD+A++LYDT+G 
Sbjct: 362 PELKRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDIAWRLYDTYGF 421

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHSLGLGS--GTTEKIWFSLKEKYG 453
           P D+ Q +   +GL+ +D  +F    E+ R +A    S G G    T +    +L E   
Sbjct: 422 PADLTQLMAEEKGLS-VDETAF----EDARKKAIETSSAGAGKFRDTLDLDVHALAE--- 473

Query: 454 ATQFIGYDLLRGS-----KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
             Q  G      S      F  E  + + +  P      V  I+ AI + G+ V++ V+G
Sbjct: 474 -LQQKGIPTTDDSPKYAYSFTGEGSEAVYKFEPC-----VGKIL-AIRRDGKFVDQLVAG 526

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRT 567
           ++  V+ D+T FYAE GGQ+ D G     G      +V   +  G ++       G    
Sbjct: 527 EEGAVLLDRTNFYAEQGGQIYDVGVLSKSGDESNEFNVSNCQVRGGYIVLVGSAEGSFSV 586

Query: 568 EMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             ++    D ++R+QL + NH+ TH+L++AL  +L     Q GS + PD +RFD T+   
Sbjct: 587 GDNVNQRFD-EDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVAPDRMRFDFTNKAA 644

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---- 681
           +T  ++K  E+    +I     V  +    EDA   +G  A+    Y D VRVV+V    
Sbjct: 645 MTPEQVKQAEEYAQQLINAKGQVYAKNSPLEDAKKINGLRAMFDETYPDPVRVVAVGTPV 704

Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                  E E G   +   CGGTH+ +   I  + I SE +I  GIRRI A+TG  A
Sbjct: 705 EQLLQNPEAEAGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEA 761


>gi|145346253|ref|XP_001417607.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577834|gb|ABO95900.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 967

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 271/765 (35%), Positives = 407/765 (53%), Gaps = 67/765 (8%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           S +R TF+ +F +K GH   PSS  +P NDPTL+F N+GM  +K IF G+  P       
Sbjct: 31  SRVRDTFVNYFIEKQGHVNWPSSPAVPVNDPTLLFANAGMNQYKPIFLGKADPKTAFAKL 90

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI +AWDLLT  +
Sbjct: 91  TRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGMAWDLLTNVY 150

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   RLY T +  DE        EA  +W K   L   +++     DNFW M + GPCG
Sbjct: 151 GLAPDRLYATYFGGDESQGLQPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPCG 208

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PC+EI +D+     GG   +S    +    +EIWN+VF+Q+ ++       LP   +DTG
Sbjct: 209 PCTEIHYDR----IGGRDAASLVNMDDPNCLEIWNVVFIQYNREEGGVLKSLPSKHVDTG 264

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYE--------GNNIVNHRVIVDH 278
           MG ER+ ++LQ K +NYD D+F  + +  ++++G   Y         G   + +RV+ DH
Sbjct: 265 MGFERLTSILQNKMSNYDTDVFMPIFKEIQRISGAAPYTGLLGKEDVGEKDMAYRVVADH 324

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ S  IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+P L  ++G+ +
Sbjct: 325 IRTLSIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFHKLVPCLIQQLGAVF 384

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395
           PEL+  +  I E +  E+E FG+TL +G+     VL+   ++   +++G  AF L++++G
Sbjct: 385 PELVAKQTHITEIIADEEESFGRTLQKGIDQFGKVLAAAKQEGRTVISGPEAFLLWESYG 444

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P D+ + +    G   +D   F QA  E + ++RA   G  SG  + ++     +  AT
Sbjct: 445 FPNDLTELMAEENGFT-LDNEGFAQAFAEAQEKSRAG--GKKSGGVQLLF-----EAEAT 496

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            ++  +   G    K++ K    +P ++      S V AI+     ++     +     F
Sbjct: 497 AWLQNN---GVAITKDEEKYASGRPTLE------STVTAIMSPSGFIKSTSDAEGPYGFF 547

Query: 516 -DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D T FYAE+GGQ+ D+G        + ++DV  K    +V H     G +    +    
Sbjct: 548 MDATTFYAESGGQVCDSGLITTPSGSMSVSDV--KVAAAYVMHTGDVSGTVSVGDAAKCA 605

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +DY  R  +  NH+ TH+L++AL  ++G  V Q GS +  + LRFD +H+K  T+ ++  
Sbjct: 606 VDYDRRDNIMPNHTMTHVLNYALRKVMGDGVDQKGSLVDEEKLRFDFSHNKGATTKQIAE 665

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------E 682
           IE  VN+ I   L V  R +  + A+  +G  A+ G  Y D VRVVSV            
Sbjct: 666 IEAIVNEQIKSKLAVDKREVALDKAMTINGLRAVFGEVYPDPVRVVSVGPSIDDLLANPS 725

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +    +S   CGGTH++ST       I+ ES I  GIRRI   T
Sbjct: 726 DDKWKNYSIEFCGGTHLASTDFAEQFVILEESGIAKGIRRITGAT 770


>gi|209877330|ref|XP_002140107.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
 gi|209555713|gb|EEA05758.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 984

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 302/839 (35%), Positives = 443/839 (52%), Gaps = 93/839 (11%)

Query: 6   SIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA---- 60
           ++R  F++FF  K  H+   S+S+IP NDPTL+FTN+GM  FK+IFT   +P  +     
Sbjct: 15  NVRQQFIDFFVNKANHKFYRSASVIPLNDPTLLFTNAGMNQFKSIFTETVEPNSELSKLV 74

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A++LLTK ++
Sbjct: 75  RVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIKWAFELLTKVYE 134

Query: 120 LDQRRLYITVY--DE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
           +   RLY+T +  D+       DEEA  +W  ++ L  ++II  +  +NFW MA+ GPCG
Sbjct: 135 IPSERLYVTYFGGDDKLPACPVDEEARDIW--MNYLPKERIISCSAKENFWEMADVGPCG 192

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI FD+     GG   S   +++    IEIWNLVFMQ+ ++      +LP   +DTG
Sbjct: 193 PCSEIHFDR----IGGRDASHLVNKDDPSVIEIWNLVFMQYYRETDGSLVLLPAKCVDTG 248

Query: 228 MGLERMATVLQEKTNNYDIDLFKHL----------IQASEQVTGMKYEGNNI-VNHRVIV 276
           MGLER+ +VLQ K +NYD DLF  +          I   + + G K + N I +++RVI 
Sbjct: 249 MGLERLVSVLQNKLSNYDTDLFIPIFNQIHSIFPNIPQYKGMVGDKDDPNKIDMSYRVIA 308

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLMMH-LLPALCTE 332
           DH+R+ S  I+DG +P+NEGRGYVLRRI+RRA+ Y R     G    +  + L+ ++   
Sbjct: 309 DHIRTLSVAISDGCIPSNEGRGYVLRRILRRAVRYGRQYFNAGMDGNMWFYKLVDSVSNI 368

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------------ 380
           +G  YPE+++ K  I+  +  E+++F KTL +G+   + V + L K              
Sbjct: 369 LGDYYPEIVEKKDTIKSAIFEEEKQFSKTLGKGIERFNRVTNKLLKSSSPINSKLKNIRL 428

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           I   + AF+LY T+G P+D+ + I    G+   D   F + +E        H L    G 
Sbjct: 429 IFPANEAFQLYSTYGFPMDLTELIASELGME-FDHEGFKKCMEN-------HQLA-SEGK 479

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
             K    L  K    Q I   LL+    + +D          +L N     + AI    E
Sbjct: 480 FNKKLDKLVLKPDIQQHI---LLKYGLNLTDDIY------KYNLNNECFGKLFAIYNGHE 530

Query: 501 IVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCA--IGDGI-RLQITDVQKKAEGIFVH 556
           +++ A      V ++FD+T +Y+E+GGQ+ D G      D +   Q+ D QK    + +H
Sbjct: 531 LIDTATCFHGIVGLIFDKTCYYSESGGQVSDIGYIELWEDNLNNFQVIDCQKFGNYV-LH 589

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +V  G      S    +  ++RR +++ NH+ATHLL++AL  +LG    Q GS + P 
Sbjct: 590 IGVVLEGKFSVGDSNCHFLIDKDRRVMTMRNHTATHLLNYALRLLLGEKCDQRGSIVEPT 649

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674
            LRFD + +K +   E++ IED +N II     V   ++    A   SG  A+ G  Y D
Sbjct: 650 KLRFDFSANKALNINEIQQIEDIINKIIKDKQEVFCDVVPLNIAKEISGLRAIFGEAYPD 709

Query: 675 RVRVVSV-----EYEDGGVHSSA---------LCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            VRV+SV     E  D    +S          LCGGTHV +T +I    I+SE  I  GI
Sbjct: 710 PVRVLSVGIPVNELNDCNFGASKSLHIKTSVELCGGTHVLNTYDIGSFIILSEEGIAKGI 769

Query: 721 RRIEAITGQR---ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           RRI A+T      A  + +    K + L +      G  + +   + +E R L LI  K
Sbjct: 770 RRIVAVTNDTANVAEDNTLILTSKFEQLKNIFGKELGKEITKCRVLLDETRILPLIKRK 828


>gi|260784931|ref|XP_002587517.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae]
 gi|229272665|gb|EEN43528.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae]
          Length = 751

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 270/765 (35%), Positives = 407/765 (53%), Gaps = 81/765 (10%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R  F+++F+ K+ H  + SSS IP +DPTL+F N+GM  FK IF G   P      Y+ 
Sbjct: 11  VRDMFIKYFEEKHEHLEVHSSSTIPLDDPTLLFANAGMNQFKPIFQGTVDPSHPMAKYRR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ A   AWDLL   + L
Sbjct: 71  VVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEACSWAWDLLVNGYKL 130

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  R+Y+T +  +E        E  ++W  + G++ D+I+  +  DNFW M E GPCGPC
Sbjct: 131 EVERMYVTYFGGNEAQGLQPDLECRQIWLDL-GVAEDRILPGSMKDNFWEMGEVGPCGPC 189

Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG   S   + +    +EIWNLVFMQ  ++       LPK +ID GMG
Sbjct: 190 SEIHYDR----VGGRDASHLVNMDVPEVLEIWNLVFMQNNREPDGSITNLPKKNIDCGMG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLR 280
           LER+ +V+Q   +NYD DLF     A ++ TG++ Y G    +        +RV+ DH R
Sbjct: 246 LERILSVVQGVLSNYDTDLFTPFFDAIQKATGVRPYTGKVGADDADGIDMAYRVLADHAR 305

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RR + YA   L         L+      +GSA+PE
Sbjct: 306 TLTISMSDGGKPDNVGRGYVLRRILRRGVRYATEKLNAPRGFFASLVDVAVQTLGSAFPE 365

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +   ++++ +  E+E+F KTL RG  +L+  ++ LG  +++ G+ A+ LYDT+G P+D
Sbjct: 366 ITKDPQMVKDIINEEEEQFLKTLSRGRRVLEKRITQLGDSKVVPGETAWLLYDTYGFPVD 425

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEKYG 453
           +   +   +GL  +D  ++    EE + +A+  S G G+G  + +         L+EK  
Sbjct: 426 LTSLMAEEKGLT-LDCAAY----EECKKQAQIRSQGKGAGVDDSVNLDVHAINELQEKGS 480

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                  D     ++  +D      +P        ++ V ++ +  + V+E   GQ+  V
Sbjct: 481 PPT----DDSPKYQYSHDDNGNYVFQP-------CTATVVSLRRDKQFVQEVTQGQECGV 529

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGD------GIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           + D+T FYAE GGQ+ D G  + +          + T    +  G +V H     G L  
Sbjct: 530 LLDRTNFYAEQGGQIYDEGYLVKEEDEVKRTAETEFTVKNCQVRGGYVMHIGTLVGTLNV 589

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D   RR +  NH++TH+L+ AL  +LG    Q GS + PD LRFD +    +
Sbjct: 590 GDKVKLFVDEARRRPIMSNHTSTHVLNFALRQVLG-EADQRGSLVAPDRLRFDFSAKGAM 648

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVS-- 680
           T+A++K  E   N+II +N     ++  +E A+A   A     A+    Y D VRV+S  
Sbjct: 649 TTAQIKEAEKICNEIIKKN----EQVYAKEAALAQAKAIQGLRAVFDETYPDPVRVLSIG 704

Query: 681 VEYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +  ED         G V S   CGGTH+   G    L IV+E +I
Sbjct: 705 ISVEDMLSDPTSPAGTVTSVEFCGGTHLQRVGHAGDLVIVTEEAI 749


>gi|186701671|ref|ZP_02971369.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700919|gb|EDU19201.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 906

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 283/947 (29%), Positives = 472/947 (49%), Gaps = 103/947 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ +  
Sbjct: 6   TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D +
Sbjct: 66  SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDVK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TV+++D+     W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE  
Sbjct: 122 KLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGERF 179

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + Q
Sbjct: 180 DPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287
           +   N+D D+F  + ++ EQ +  KY+ N         N +N  ++VI DH+R++ F IA
Sbjct: 240 DVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346
           DG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K L
Sbjct: 300 DGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKTL 359

Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I+  L  E + F KTL  GL + +  +    +++ L+ ++ FKL DT+G P++++++I
Sbjct: 360 TKIKMILNKEVQLFEKTLQLGLNIFENSI----RNQELDKEITFKLVDTYGFPIELIKEI 415

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            C +    +D+ +F+   +  +  S+A   +L +     E +      +        Y++
Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            R                        + I+    +  E+V + +  +   VVFD T FYA
Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ 
Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEHVILQINEQDRKS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N++
Sbjct: 566 ITANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699
           +  N  V    M+ ++A A GAAA     Y     ++RV+ +    G   S  LCGGTH 
Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740
             T EI  + IV  +S  AG  RI  +TG                      + +L   D 
Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDH 739

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794
           KL  L +     +   +   + + E++ +L+      K++ + ++ +   I D+      
Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQN-AKQAIIDIKNTFNT 798

Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N   H+    D+K + + ++ L  + Q  + +   +  + K   L+ + E      N
Sbjct: 799 QLTNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFA-TIN 856

Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L +   ++  +  G GGG+P+  Q G     K D+ +  V  ++
Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903


>gi|126653904|ref|ZP_01725751.1| alanyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126589629|gb|EAZ83768.1| alanyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 742

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 275/777 (35%), Positives = 415/777 (53%), Gaps = 66/777 (8%)

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ECIPGGLPGSSEEGERYIEIWN 202
           +++IR+  N  FW + E GP GP SEIF+D+G      E  P   PG   E ERY+EIWN
Sbjct: 2   ERLIRLEGN--FWDIGE-GPSGPNSEIFYDRGVEYGSDENDPEMYPGG--ENERYLEIWN 56

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
           LVF QF          LPK +IDTGMGLER+ +V+Q    N+D DLF  +I+  E+    
Sbjct: 57  LVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQNVPTNFDTDLFMPIIEKIEEFANR 116

Query: 263 KYEGNNIVN--------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           KY+  + V+               +V+ DH+R+ +F I DG LP+NEGRGYVLRR++RRA
Sbjct: 117 KYKRPSEVDLNEIFGSEEDINTPFKVVADHIRTVAFAIGDGALPSNEGRGYVLRRLLRRA 176

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           + YA+ +G  +P M  L+P +   M   YPE+ +    I+  +++E+ RF +TLD GL +
Sbjct: 177 VRYAKQIGIEKPFMFELVPTVGKIMEGFYPEVTEKSEFIQRVIKNEEIRFHETLDGGLAI 236

Query: 369 LDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
            + V       G D I   D AF+LYDT+G P+++ ++     G+  +D   F  A+EEQ
Sbjct: 237 FNEVAESQKAAGHDFIPGAD-AFRLYDTYGFPIELTEEYAEEVGMK-VDHEGFETAMEEQ 294

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R RARA    + S   +     L     A++F+G+D L  +                   
Sbjct: 295 RERARAARQDVDSMQVQN--EVLANLTVASEFVGFDTLVAN------------------- 333

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               + + A++  G++ + A  GQ+  V+  QTPFYAE GGQ+ D+G    D     + D
Sbjct: 334 ----TEIAAMIVNGQVEKVASEGQEALVILAQTPFYAEMGGQIADSGIISNDSFTAVVKD 389

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK   G  +H  +VE G +  E ++   ++  +R  +  NH+ATH++  AL  +LG HV
Sbjct: 390 VQKAPNGQPLHTVVVESGEMHVEDAVQAIVNRDDRNLIIKNHTATHIMQRALKDVLGDHV 449

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + PD LRFD +H   +T  EL+ IE  VN+ +  ++ VV   M  + A   GA 
Sbjct: 450 NQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNEKVWDDIEVVIEEMAIDKAKEMGAM 509

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY D VRVVS+     G +S  LCGG HV  + EI    IVSE  I AG RRIEA
Sbjct: 510 ALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKRSSEIGFFKIVSEGGIGAGTRRIEA 564

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----LIHAKRKLQ 780
           +TG+ A   +  ++  L   A+ LK +  ++V +V+ +  +Y++LQ     L       Q
Sbjct: 565 VTGKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQALQGDYKELQRDNEALSQKIANAQ 624

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
                 +   I DV  +S  +   D+ +L+ +MD L+ K+   +I+L  +  +K      
Sbjct: 625 AGAIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMDDLKVKMPKAVIVLGAVDGDKVMLCAG 684

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           V  E +   ++A ++ ++ A+   GG GGGRP MA +G    +K D+A+  V  ++K
Sbjct: 685 VSKELVGGNYHAGNIVKMVAEAC-GGKGGGRPDMAMAGAKEASKLDEALLSVYDYVK 740


>gi|323455368|gb|EGB11236.1| hypothetical protein AURANDRAFT_52432 [Aureococcus anophagefferens]
          Length = 1017

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 288/792 (36%), Positives = 394/792 (49%), Gaps = 84/792 (10%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            V  +R TF+++F +K GH  +PSS ++P  DPTL+F N+GM  FK IF GQ  P  Q  
Sbjct: 39  TVPRVRDTFVDYFAEKRGHTRVPSSGVVPLQDPTLLFANAGMNQFKPIFLGQAAPGTQLA 98

Query: 62  T-----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           T       QKC+RAGGKHNDL++VG    HHTFFEMLG++SFG YFK  A   A +LL  
Sbjct: 99  TLERACNSQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGSWSFGDYFKAEATAWAKELLVD 158

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD  R+Y T +        + D EA  LW   +G   +++I  +  DNFW M ++GP
Sbjct: 159 VYGLDMDRMYATYFEGSPEEGLEPDYEARDLWLA-AGFKPEQVIPGSKADNFWEMGDSGP 217

Query: 169 CGPCSEIFFDQGECIPGGLPGSSE-------EGERYIEIWNLVFMQFEQQNKQERF-ILP 220
           CGPC+E+ +D        L G  +       +    IEIWNLVF+QFE+  K +R   LP
Sbjct: 218 CGPCTELHYD-------ALGGRGDVAHLVNMDDPTVIEIWNLVFIQFERDGKTKRLSSLP 270

Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA--------SEQVTGMKYEGNNIVN- 271
              +DTG+GLER+  +L +  +NYD D F  L  A        S    G+  + +   N 
Sbjct: 271 AQHVDTGLGLERLVAILNQVPSNYDTDAFSGLFAATLAELPEGSAPYGGLLGDDDKAQNY 330

Query: 272 ----HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLL 326
               +R I DH+R  SF IADG  P+NEGRGYVLRRI+RRA+ Y    LG     M  L 
Sbjct: 331 RDTAYRAIADHVRCLSFAIADGARPSNEGRGYVLRRILRRAVRYGLSTLGAEPGFMARLA 390

Query: 327 PAL-CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           PAL  +  G  YPEL      I E L  E+  F KTL+RG+  LD  L  L   ++L GD
Sbjct: 391 PALAASHFGDYYPELRDELPTIVEVLAEEEATFAKTLERGVKYLDEELDKLEATDVLGGD 450

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF LYD+ G P+D+   +   RG   +D   F  A+  Q  R++A            + 
Sbjct: 451 AAFFLYDSLGFPVDLTAQMAEERGFL-VDEPGFEAAMRAQVDRSKADRKARAEAALGTVR 509

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI-VKAIVQQGEIVEE 504
             L     AT  +G   +  +  +     V      ++    V+ + + A      +V+ 
Sbjct: 510 LEL--GVAATAALGDAGVAPTDALAVGATVADDATEVNGATVVALVAIDAATGDPALVDA 567

Query: 505 AV--SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           A    G  V VV D TPFYAEAGGQ  D G  +  G  + + DVQ  A G  VH   V  
Sbjct: 568 ATCGPGAAVGVVLDATPFYAEAGGQASDRGSLVLGGASVDVIDVQAYA-GYVVH--TVAS 624

Query: 563 GILRTEMSLVL------TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           G    +++L +       +D   RR+ ++NH  TH ++HAL   LG  V Q GS    + 
Sbjct: 625 G---ADVALAVGDAADGVVDGDARRKHAVNHMMTHAVNHALWAELGDGVGQRGSDANDER 681

Query: 617 LRFDVTHSKPITSAELKSIEDNVN-DIIAQNLPVVTRIMNREDAIASGA-AALLGTKYND 674
           LRFD +H K + +A+L ++E  VN + +A    V    +  EDA    A  A+ G  Y D
Sbjct: 682 LRFDFSHGKALKAAQLAAVEAAVNTEYVADGATVERAKVGLEDAKNIRALRAVFGEAYPD 741

Query: 675 RVRVV-------------------SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V VV                   S + E     S  LCGG H+          I  E++
Sbjct: 742 PVNVVAMFPKAAFAGAPTIADVLASPDDEKWDKASIELCGGNHLGDAAAAEYFVITQETA 801

Query: 716 IRAGIRRIEAIT 727
           +  G+RRIEA+T
Sbjct: 802 VAKGVRRIEALT 813


>gi|49119610|gb|AAH73734.1| LOC443692 protein [Xenopus laevis]
          Length = 1005

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 268/779 (34%), Positives = 410/779 (52%), Gaps = 73/779 (9%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           + ++IR  FL +FQ K+GH  +PSSS+ P  DP+L+F N+GM  FK IF G   P     
Sbjct: 53  SAAAIRRAFLRYFQEKHGHRHVPSSSVRPRGDPSLLFVNAGMNQFKPIFLGTADPRSDMA 112

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW LLT+
Sbjct: 113 QYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACSMAWQLLTQ 172

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RLY+T +          D+E  ++W  + G+   +++     +NFW M ETGP
Sbjct: 173 GYGIPEDRLYVTYFGGEPTLGLSADQETQEIWLSL-GVPPARLLPFGLKENFWEMGETGP 231

Query: 169 CGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPC+EI +D      GG   +S   ++    +EIWNLVFMQ+ +++ +   +LP+  +D
Sbjct: 232 CGPCTEIHYDH----VGGRNAASLVNQDSPDVVEIWNLVFMQYNRESDRSLRLLPQQHVD 287

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG--------NNIVNHRVIV 276
           TGMGLER+ TVLQ K +NYD DLF  +++A  + +   +Y+G        +  + +RV+ 
Sbjct: 288 TGMGLERLVTVLQGKRSNYDTDLFSPILEAIMKGSRAPQYQGLMGKEDTEHTDMAYRVVA 347

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM-HLLPALCTEMGS 335
           DH+R+    IADG+ P   G   VLRRI+RRA+ ++  +    PL +  L+P++   +G 
Sbjct: 348 DHIRTLCVCIADGVYPGMSGAELVLRRILRRAVRFSSEILRAPPLFLSSLVPSVVHVLGE 407

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PEL + K  I   L   +E F  +L +G  ++D  L    + +     VA+ L+   G
Sbjct: 408 AFPELEREKSQIMNILNENEEAFLISLQQGRRIIDRTLQQQEEPQTFPVGVAWSLHRNLG 467

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD++  +L  RG      IS ++A              +   T E+    ++ +    
Sbjct: 468 FPLDLIGLMLEERG------ISLDKA-------------AMDHLTVEEAERKMRNQQADE 508

Query: 456 QFIGYDLLRGSKFMKEDRKVLC--QKPPIDLT---------NGVSSIVKAIVQQGEIVEE 504
              G +L   S    + R V C    P  + T             + V  + +   +  E
Sbjct: 509 AQTGLELDVHSMAELQRRGVPCTNDSPKYNYTLAADGKYVFGPCRATVLMLYKDHSLHSE 568

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERG 563
              GQ+  V+ DQT FYAE GGQ  D G  +    +  +  V+  +  G ++ H +    
Sbjct: 569 IDKGQRCGVILDQTCFYAEQGGQSCDQGYFVRKDQQEALFPVESVQVAGGYMLHEVTTPE 628

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +LR    LVL +D  +R      H+ATHLL++ L  +LG +  Q GS +T + LRFDV+ 
Sbjct: 629 VLRVGDQLVLYLDEAHRLACMQKHTATHLLNYTLHQVLGENTVQRGSHVTAERLRFDVSV 688

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-- 681
           + P+   +L+ +E  + D+I+Q+  + T ++    A        +   Y + VRVVSV  
Sbjct: 689 TAPVHVEQLQEVEQVLQDLISQDEEIHTALVPLTAAKCVRGLRTVDEAYPNPVRVVSVGI 748

Query: 682 -------EYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                        + +S  LC GTH+ +TG I  + IVSE  +  GI R+ AITG+ A+
Sbjct: 749 PVDVALKPGSQAALQTSVELCCGTHLLTTGAIQDVVIVSERPLAKGITRLIAITGEEAK 807


>gi|13357929|ref|NP_078203.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762259|ref|YP_001752452.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920314|ref|ZP_02931660.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508708|ref|ZP_02958194.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|81624421|sp|Q9PQC2|SYA_UREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830281|sp|B1AJ08|SYA_UREP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|11271362|pir||D82899 alanyl-tRNA synthetase UU369 [imported] - Ureaplasma urealyticum
 gi|6899351|gb|AAF30778.1|AE002134_2 alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827836|gb|ACA33098.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902731|gb|EDT49020.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675631|gb|EDT87536.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 906

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 283/947 (29%), Positives = 472/947 (49%), Gaps = 103/947 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ +  
Sbjct: 6   TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D +
Sbjct: 66  SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDVK 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TV+++D+     W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE  
Sbjct: 122 KLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGERF 179

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + Q
Sbjct: 180 DPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287
           +   N+D D+F  + ++ EQ +  KY+ N         N +N  ++VI DH+R++ F IA
Sbjct: 240 DVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAIA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346
           DG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K L
Sbjct: 300 DGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKTL 359

Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I+  L  E + F KTL  GL + +  +    +++ L+ ++ FKL DT+G P++++++I
Sbjct: 360 TKIKMILNKEVQLFEKTLQLGLNIFENSI----RNQELDKEITFKLVDTYGFPIELIKEI 415

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            C +    +D+ +F+   +  +  S+A   +L +     E +      +        Y++
Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            R                        + I+    +  E+V + +  +   VVFD T FYA
Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ 
Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEHVILQINEQDRKS 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N++
Sbjct: 566 ITANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699
           +  N  V    M+ ++A A GAAA     Y     ++RV+ +    G   S  LCGGTH 
Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740
             T EI  + IV  +S  AG  RI  +TG                      + +L   D 
Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDH 739

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794
           KL  L +     +   +   + + E++ +L+      K++ + ++ +   I D+      
Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQN-AKQAIIDIKNTFNT 798

Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N   H+    D+K + + ++ L  + Q  + +   +  + K   L+ + E      N
Sbjct: 799 QLTNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFATT-N 856

Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L +   ++  +  G GGG+P+  Q G     K D+ +  V  ++
Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903


>gi|71655886|ref|XP_816499.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881631|gb|EAN94648.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 270/780 (34%), Positives = 412/780 (52%), Gaps = 92/780 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P  +    
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ FD+     GG   +   ++E    IEIWNLVFMQFE+        LPKM +DTG
Sbjct: 184 PCSEVHFDR----LGGRNAAELVNKEDPMVIEIWNLVFMQFERHEDGVLVPLPKMHVDTG 239

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278
           MGLER+ +++Q+  +NYD D +  L +A + VTG          + + +  V +RVI DH
Sbjct: 240 MGLERLTSIMQDVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADH 299

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R  S  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ A+   +G  +
Sbjct: 300 IRCLSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFF 359

Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
             +   + +  I+  L  E+  F KT D GL  L+  ++    D  ++GD AF L+D +G
Sbjct: 360 THMQDPRTVQRIKTVLADEEASFAKTWDVGLKHLNKAVAD-AVDNTISGDNAFILHDRYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +L  +    +D+  F+ A+       +A+ L  G     K +  + +     
Sbjct: 419 FPVDLTC-LLAEKAGLRVDMNGFHAAM-------KANQLSAGRVAAAKTFLDVHQLEELK 470

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVE- 512
           Q         +K++ ++R               ++ VKAI  +  G  V+  + G++ E 
Sbjct: 471 QMGIAPTEDAAKYIWKNR---------------TAEVKAIFNKKTGTFVDMLMPGEEGEE 515

Query: 513 ---VVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG---- 563
              ++ D T FYAE+GGQ+ DTG   A  D +  ++  V     G  VH   +       
Sbjct: 516 DIGLIMDVTNFYAESGGQIYDTGRIVAAADAV-FEVKKVYNLG-GYVVHLGRMMTTNSTA 573

Query: 564 -ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPD 615
             +    S+ L +DY+ R  ++ NHS TH+L+  L  +L          V Q GS +T +
Sbjct: 574 VPIPVTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEE 633

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYND 674
            LRFD +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D
Sbjct: 634 MLRFDFSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPD 693

Query: 675 RVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V V+SV           E  +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI
Sbjct: 694 PVSVISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRI 753


>gi|146086823|ref|XP_001465654.1| alanyl-tRNA synthetase [Leishmania infantum JPCM5]
 gi|134069753|emb|CAM68079.1| putative alanyl-tRNA synthetase [Leishmania infantum JPCM5]
 gi|322499108|emb|CBZ34180.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 962

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 296/966 (30%), Positives = 489/966 (50%), Gaps = 122/966 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           VS +R  F+++F+K GH  +PSS + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ DE        EA +LW +   L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDENNGLDPDLEAKELWGQF--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ FD+     GG   +S   ++    +EIWNLVFMQFE++       LP+  IDTG
Sbjct: 186 PCSEVHFDR----IGGRNAASLVNKDDPMVVEIWNLVFMQFERRAGGSLTPLPQKHIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278
           MGLER+ ++LQ   +NYD D +  L +A +  TG            + + +V +RV+ DH
Sbjct: 242 MGLERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R  +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++CT +G  +
Sbjct: 302 IRCLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFF 361

Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDT 393
           P L + + +  I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D 
Sbjct: 362 PHLKEPRNIQRIKTVLADEEQSFAKTWEMGLKHFNHAVNECRANNSKVISGSEAFVLHDR 421

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKY 452
           +G P+D+   +L  +    +D+  FN  ++E +  A     G  + T   I  + L+E  
Sbjct: 422 YGFPVDLTC-LLAEKDGMTVDLEGFNAEMKESKVSA-----GRVAATKTFIDAYQLEELK 475

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT---NGVSSIVKAIVQQGEIVEEAVSGQ 509
                      RG     +  K + +    DL    +  +S   ++++ G      +  +
Sbjct: 476 ----------TRGIPQTDDAAKYVWEDSTGDLLAIFDKKNSKFISLLEPG----NDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVER---GI 564
            V ++   T FYAE+GGQ+ DTG   A  D +  ++  V   A G  VH   + +     
Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSV-FEVKKVYNVA-GYVVHVGNLSKDSASS 579

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLR 618
           + +   + L +DY+ R  ++ NH+ TH L+  L  +LG      + V Q GS +T + LR
Sbjct: 580 IPSSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLR 639

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
           FD +++  +++ +L  +E  +N+ I   LPV    +  E A   +G   + G KY D V 
Sbjct: 640 FDFSYNTKLSNEDLVRVERLLNEKIQAGLPVYREEVPLEAASKINGLRHMFGEKYPDPVS 699

Query: 678 VVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI--- 723
           V+S+           E E+   ++   CGGTH+ +  E     I+SE ++  G+RR+   
Sbjct: 700 VISIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVA 759

Query: 724 ---EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGR------VEEIWEEYRKLQLI 773
              EA    +A + L GQ DE +K  A+   V   +V+ +      +  + +   +  + 
Sbjct: 760 TKSEADKVIKAGAVLKGQYDELMKKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNID 819

Query: 774 HAKRKLQLNVEDLSC----------------HKIADVNFMSHIISE--VDSKELKSVMDA 815
            A +++   ++  +                 +  A   F+ H ++E   + + L++  D 
Sbjct: 820 AAIKRMNATLKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDG 879

Query: 816 LQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
               +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P+ 
Sbjct: 880 FTSTVSGPVGVFLIGSDDEKALAIVSMPAAFVERKMSAVAWAKSSI-----GKGGGKPNA 934

Query: 875 AQSGGP 880
           AQSG P
Sbjct: 935 AQSGLP 940


>gi|255727014|ref|XP_002548433.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240134357|gb|EER33912.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 700

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 372/680 (54%), Gaps = 55/680 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            + +R+TFL++F++N H  +PSSS++P NDPTL+F N+GM  +K IF G   P     T 
Sbjct: 27  AAKVRSTFLDYFKQNKHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFATL 86

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK +
Sbjct: 87  KRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDFSWELLTKVY 146

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T +  DE        EA + W K+ G+  D I+  +  DNFW M + GPCG
Sbjct: 147 GLPEDRLYVTYFGGDEKQGLEPDLEAKEFWLKV-GVPEDHILPGSVKDNFWEMGDQGPCG 205

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI FD+     GG   S   + +    IE+WN+VF+QF ++       LP   IDTG
Sbjct: 206 PCSEIHFDR----IGGRNASDLVNMDDPNVIEVWNVVFIQFNREADGNLRSLPNKHIDTG 261

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278
           MG ER+ ++LQ+K++NYD D+F  +     ++TG++ Y G       + I   +RVI DH
Sbjct: 262 MGFERLVSILQDKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIADH 321

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F I DG +P NEGRGYVLRRI+RR   Y R  + Y        L+  +  +    
Sbjct: 322 VRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEI 381

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTH 394
           +PE+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+
Sbjct: 382 FPEIASGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTY 441

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +    GL  ID   F +A EE R  ++      G+GT          K G 
Sbjct: 442 GFPVDLTRLMAEEAGLK-IDEPGFERAKEESREASK------GNGT----------KDGK 484

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEV 513
           T  +  D+   S+  K D            T  V + V  I    + V+    S  +  +
Sbjct: 485 T-LVKLDVHALSELDKNDAIPKTNDEFKYGTENVKATVVGIYDGSKFVDSIEDSSVQCGI 543

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+TPFYAE GGQ  DTG  + DG     +++VQ  A G  +H   +  G L     ++
Sbjct: 544 LLDKTPFYAEQGGQEYDTGKIVIDGKSEFNVSNVQVYA-GYVLHTGNILEGKLSVGDEII 602

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            T D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + ++  EL
Sbjct: 603 ATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQALSPKEL 662

Query: 633 KSIEDNVNDIIAQNLPVVTR 652
           + +E   N  I  N  V  +
Sbjct: 663 EKVEAISNKYIKNNDKVFYK 682


>gi|315929558|gb|EFV08748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 715

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 274/762 (35%), Positives = 416/762 (54%), Gaps = 64/762 (8%)

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSS 191
           D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E          
Sbjct: 2   DDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFNSSEDYMG 59

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
            +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+D  LF  
Sbjct: 60  GDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNFDSSLFMP 119

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI+RRA+ +
Sbjct: 120 IINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRILRRALRH 179

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
             LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ G+ + + 
Sbjct: 180 GYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIENGIEIFNE 239

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + EQ++RA+A
Sbjct: 240 ELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNEQKARAKA 296

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
              G G  T    + +L EK+G   F+GY+            K  C+   + L +     
Sbjct: 297 SWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILALLDEDFKE 344

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  +   G             V+ + TPFYA +GGQ  D+G       + ++ D QK   
Sbjct: 345 VSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVLDTQK--- 385

Query: 552 GIF-VHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             F ++ + ++ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILGSHVSQ G
Sbjct: 386 -FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSHVSQAG 444

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SGA AL  
Sbjct: 445 SLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSGAIALFN 504

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRIEA+  +
Sbjct: 505 EKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAVVSK 558

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLNVEDLSC 788
            A   +  Q E+L  +   LK    +++  ++++  E   L+  +    K +L+ +++  
Sbjct: 559 AALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELDSKNIQG 616

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            +I         +  +D+ ++K+++D  + K    +I+L+ +  EK     I +   + D
Sbjct: 617 VEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITLAAGVKD 663

Query: 849 -RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               A  L + +A++L GG GGGR   A +GG + +K ++A+
Sbjct: 664 VPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 704


>gi|322504973|emb|CAM45216.2| putative alanyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 962

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 296/969 (30%), Positives = 486/969 (50%), Gaps = 128/969 (13%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T +        D D EA +LW +   L   +II     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSE+ FD+ G     GL   +++    +EIWNLVFMQFE++       LP+  +DTGMG
Sbjct: 186 PCSEVHFDRIGGRNAAGL--VNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+ ++LQ   +NYD D++  + +A +  TG +          + + +V +RV+ DH+R
Sbjct: 244 LERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++C  +G  +P 
Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPH 363

Query: 340 LIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHG 395
           L   + +  I+  L  E++ F KT + GL   +            +++G  AF L+D +G
Sbjct: 364 LKDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +L  +    +D+  FN  +       +A+ +  G     K +    +     
Sbjct: 424 FPVDLTC-LLAEKDGMTVDLEGFNAEM-------KANQVSAGRVAAAKTFIDAYQLEDLK 475

Query: 456 QFIGYDLLRGSKFMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           +        G+K+  ED   +VL       + +  +S   ++++ G      +  ++V +
Sbjct: 476 KRAIPQTDDGAKYAWEDSTGEVLA------IFDKKNSRFISLLEPG----NDLGAEEVGI 525

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFVHHAIVER---GILRTE 568
           + + T FYAE+GGQ+ DTG  +    R  + +V+K     G  VH   + +     +   
Sbjct: 526 ILNATNFYAESGGQVYDTGRLV--AARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIPLS 583

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVT 622
             + + +DY+ R  ++ NH+ TH L+  L  +L       + V Q GS +T + LRFD +
Sbjct: 584 ALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVTDEMLRFDFS 643

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA------LLGTKYNDRV 676
           H   +++ +L  +E  +N+ I   LPV      RE+   + A+       + G KY D V
Sbjct: 644 HHTKLSNEDLVRVEKLLNEKIQAGLPVY-----REEVPLAAASKINGLRQMFGEKYPDPV 698

Query: 677 RVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI-- 723
            V+S+           E E+   ++   CGGTH+S+  E     I+SE ++  G+RR+  
Sbjct: 699 SVISIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVV 758

Query: 724 ----EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR- 777
               EA    +A + L GQ DE +K  A+   +   +V+ +  ++ +    L L +A R 
Sbjct: 759 ATKAEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNK--KVGDSCVPLVLKNAMRD 816

Query: 778 -------------KLQLNVEDL----------SCHKIADVNFMSHIISE--VDSKELKSV 812
                        KLQ+               + +  A   F  H ++E   + + L++ 
Sbjct: 817 NIDAAIKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAF 876

Query: 813 MDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            D     +   + + L+G   EK  +++ + T  +  + +AV  A+ S      G GGG+
Sbjct: 877 SDGFSSTVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGK 931

Query: 872 PHMAQSGGP 880
           P+ AQSG P
Sbjct: 932 PNAAQSGLP 940


>gi|291320346|ref|YP_003515608.1| alanyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752679|emb|CBH40652.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma
           agalactiae]
          Length = 880

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 298/915 (32%), Positives = 467/915 (51%), Gaps = 106/915 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF+   H ++ S SLIP NDP+L++ NSG+   KN F+G++ P    +T  
Sbjct: 7   TEIRQKWLDFFKSKDHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPAFRLTNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    ++D  +
Sbjct: 67  QKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAFAKEFLVNVLEMDLEK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D+GE   
Sbjct: 123 LYFTYYEEDLEAKNYWLE-NGVDESHLISGTKDTNFWDLG-SGPCGPCTEIFYDRGEKYD 180

Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+  
Sbjct: 181 SRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYIELKQKNIDTGAGLERLASIMQDVP 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----------EGNNI-VNHRVIVDHLRSSSFLIADGI 290
            NYD DLF ++I+  E+ +  KY          E N I  N ++I DH+R+    IADG 
Sbjct: 241 TNYDSDLFINIIREIEKYSPYKYVIENYFVKDAEQNEINTNFKIIADHIRTVVNAIADGA 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
             +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E    K +IE+ 
Sbjct: 301 KISNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVHVVKASLPYEYDE----KDVIEQ- 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F KT+++G VLL+  L    K +I +G VAF L +T+G P+++  +IL  +G+
Sbjct: 356 IKEEELLFSKTIEKGKVLLESFLD--SKSKIFDGAVAFNLLETYGFPIELTAEILHQKGI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFM 469
           + +D+ +F  A E+    A A   G  SG  + I   +L +K     F+GY  L      
Sbjct: 414 S-VDMDAFELAKEKH---ALASKGGKASGMDKVINSLALIDK-KMDNFVGYSEL------ 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                           N  + ++K + ++ E+      G    V+ + TPFYA +GGQ  
Sbjct: 463 ----------------NATTKVLKLLDEENEVEAFETGGY---VLLETTPFYATSGGQRH 503

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I    +++I DV K   G  +H      G +    S+   +D   R  L  NHS 
Sbjct: 504 DKGFIIQGENKIKIVDVFKDKFGNHIHFV---EGKMNIHESVSCYVDPTIRIGLERNHSG 560

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K++ED V   I++++  
Sbjct: 561 THLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYISKSIDR 620

Query: 650 VTRIMNREDAIASGAAALL--GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
              I   + A   GA   L  G   + R +RVV       G  +S LCGGTH+S+T ++ 
Sbjct: 621 EYIITTVDKAKEMGAIMTLEEGEYMDPRAIRVVRF-----GDITSDLCGGTHLSNTSKLE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLK-------------- 750
              I +    +AG+ RI AI+  +    +L   ++KL   LA+ +K              
Sbjct: 676 NFKITNVEKKQAGVFRIRAISSSKLVNEYLTDVNKKLNDELATIIKKIKELKSDYSAPVV 735

Query: 751 --------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
                       N++  +EE  E Y+  QL+     ++ + E +   KI D  F  +I  
Sbjct: 736 NENESDIETLNANIIKIIEECREAYK--QLLKDHSNVEFDYETVKFVKIND--FDVYINL 791

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           E D+ ++K +  +++ K QSG  + +  S+ +   +L + T         +D  ++  K+
Sbjct: 792 EADASDVKVIAASVRDKFQSGKTIAIVGSRNENELLLAIATR-------VIDANKMFKKI 844

Query: 863 LG--GGGGGGRPHMA 875
                G GGG P +A
Sbjct: 845 ASELDGRGGGAPILA 859


>gi|222612529|gb|EEE50661.1| hypothetical protein OsJ_30891 [Oryza sativa Japonica Group]
          Length = 901

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 275/734 (37%), Positives = 376/734 (51%), Gaps = 77/734 (10%)

Query: 43  MVPFKNIFTGQEKP------VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           M  FK +F G   P      + +A  T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+
Sbjct: 1   MNQFKPVFLGTAAPDAPLGRLRRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 59

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSA 148
           SFG YFKE AI  AW+LLT+ + L   R+Y T +  DE        E+  +W K   L  
Sbjct: 60  SFGDYFKEEAIGFAWELLTQVYKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPK 117

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQ 207
           +K++     DNFW M +TGPCGPC+EI FD+ G      L  + +     IEIWNLVF+Q
Sbjct: 118 EKVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGNRDAASLVNNDD--PTCIEIWNLVFIQ 175

Query: 208 FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKY 264
           F ++       LP   +DTGMG ER+ ++LQ K +NYD D+F  +  A  Q+ G     Y
Sbjct: 176 FNREADCTLRPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSY 235

Query: 265 EGN------NIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLL 315
            G       + V+  +RV+ DH+R+ SF IADG  P NEGR YVLRRI+RRA+ +  + L
Sbjct: 236 SGKVGPEDVDKVDMAYRVVADHIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKL 295

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL----DG 371
              +     L+      MG  +PEL   +  I++ ++ E+E F  TL +G        D 
Sbjct: 296 KAKQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADA 355

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           V    G D       AF L+DT+G P+D+ + +    GL+ +D   F+ A+EE R +AR 
Sbjct: 356 VKESGGTD-------AFVLWDTYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARN 407

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                G         S+     AT       LR       D       P     +   S+
Sbjct: 408 ARFKAGEN-------SIVLDANATA-----QLRNQGLASTD-----DSPKYGYKDN-DSV 449

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           VKAI    E V  A   +   +V + T FYAE GGQ+ DTG   G      +T+VQ  A 
Sbjct: 450 VKAIYTGSEYVSAASGDEDFGLVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFA- 508

Query: 552 GIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           G  +H     +G   L     +   +DY  R  ++ NH+ TH+L+ AL  ILG HV Q G
Sbjct: 509 GYVLHMGSFTKGSKALSVGDKVACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKG 568

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALL 668
           S + P+ LRFD +H KP+   +L+ IE  VN  I   L V  R +   DA   +G  A+ 
Sbjct: 569 SIVLPEKLRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVF 628

Query: 669 GTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           G  Y D VRVVSV           E ++    S+ LCGGTH+ +T E     ++SE  I 
Sbjct: 629 GEIYPDPVRVVSVGRKVEDLLANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIA 688

Query: 718 AGIRRIEAITGQRA 731
            G+RRI A+T + A
Sbjct: 689 KGVRRITAVTAKHA 702


>gi|322491846|emb|CBZ27119.1| putative alanyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 962

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 303/971 (31%), Positives = 491/971 (50%), Gaps = 116/971 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ D+        EA +LW +   L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDKNNGLNPDLEAKELWAQF--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ FD+     GG   +S   ++    +EIWNLVFMQFE++       LP+  IDTG
Sbjct: 186 PCSEVHFDR----IGGRNAASFVNKDDPMVVEIWNLVFMQFERRADGFLTPLPQKHIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278
           MGLER+ ++LQ   +NYD D +  L +A +  TG            + + +V +RV+ DH
Sbjct: 242 MGLERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNNPDSDALVAYRVVADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R  +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++CT +G  +
Sbjct: 302 IRCLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFF 361

Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDT 393
           P L + + +  I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D 
Sbjct: 362 PHLKEPRNIQRIKAVLADEEQSFAKTWEMGLRHFNHAVNECRANNSKVISGSEAFVLHDR 421

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+   +L  +    +D+  FN  ++E +  A     G  + T   I     E+  
Sbjct: 422 YGFPVDLTC-LLAEKDGMTVDLEGFNAEMKESKVSA-----GRVAATKTFIDAYQLEELK 475

Query: 454 ATQFIGYDLLRGSKFMKEDRK--VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
                  D +  +K++ ED    VL       + +  +S   ++++ G      +  + V
Sbjct: 476 TRGIPQTDDV--AKYVWEDSTGDVLA------IFDKKNSKFISLLEPG----NDLGAEGV 523

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEM 569
            ++ + T FYAE+GGQ+ DTG  + G     ++  V   A G  VH  ++ +       +
Sbjct: 524 GIILNTTNFYAESGGQVYDTGRLVAGSDSVFEVKKVYNVA-GYVVHVGSLSKDSASPIPL 582

Query: 570 SLV--LTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDV 621
           S V  + +DY+ R  ++ NH+ TH L+  L  +LG      + V Q GS +T + LRFD 
Sbjct: 583 SAVVQMQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFDF 642

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS 680
           ++S  +++ EL  +E  +N+ I   LPV    +  E A   +G   + G KY D V V+S
Sbjct: 643 SYSTKLSNEELVRVEQLLNEKIQAGLPVYREEVPLEAASKINGLRQMFGEKYPDPVSVIS 702

Query: 681 V-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI------ 723
           +           E E+   ++   CGGTH+ +  E     I+SE ++  G+RR+      
Sbjct: 703 IGTPINEMLTNPEKEEWRDYAVEFCGGTHLKNLKEADKAVIISEEALMKGVRRVVVATKS 762

Query: 724 EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGRVEE-------IWEEYR------- 768
           EA    +A + L GQ DE ++  A+   V   +V+ +          +  E R       
Sbjct: 763 EADKVIKAGTELKGQYDELMQKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDAAI 822

Query: 769 -------KLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISE--VDSKELKSVMDALQK 818
                  K Q   A+ K     + L + +  A   F+ H ++E   + + L++  D    
Sbjct: 823 KRMNAILKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFSS 882

Query: 819 KIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P  AQS
Sbjct: 883 TVSGPVGVFLIGSDDEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPSAAQS 937

Query: 878 GGPNGNKADQA 888
           G P  + A  A
Sbjct: 938 GLPAKDVAAAA 948


>gi|116515185|ref|YP_802814.1| hypothetical protein BCc_254 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285419|sp|Q057H8|SYA_BUCCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116257039|gb|ABJ90721.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 881

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 292/884 (33%), Positives = 471/884 (53%), Gaps = 59/884 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+FF++  H++  SSSLIP +D +L+FTN+GM  FK I+   +K    ++ T Q 
Sbjct: 6   IRAMFLQFFKEKNHKIFKSSSLIPKDDNSLLFTNAGMNQFKKIYLKNKKKNQLSIATSQY 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R GGKH+DL  VG T  HHT FEMLGNFSFG YFKE AI+ AW+ LT  K  +L +++
Sbjct: 66  CIRTGGKHDDLKKVGHTPYHHTLFEMLGNFSFGEYFKENAIKYAWEFLTHKKWLNLSKKK 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177
           ++IT Y  D E  K+W  I  +    +I+I         +DNFW M + GPCGP +EIF+
Sbjct: 126 IWITYYYNDNETKKIWLNIIKIKNTHLIKIYDKKNIKYNSDNFWKMGDLGPCGPSTEIFY 185

Query: 178 DQGECIPGGLP-GSSEEGERY-IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            Q +         S +E E+Y +EIWNLVFM+F Q  K++   LP  SIDTGMGLER++ 
Sbjct: 186 YQKKNRKEKKSIKSYKELEKYCLEIWNLVFMEFNQITKKKIIKLPIPSIDTGMGLERISV 245

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ   + +  + F  LI+A ++   +K +  N V+ ++I DH+R+S+ LIA+ ILP NE
Sbjct: 246 ILQNVKSIFHTNNFIQLIEAIKKKIKIKIKKKNNVSLKIISDHIRTSTCLIAENILPGNE 305

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA-YPELIQAKL-LIEETLRS 353
           GR YVLR+I+RRA+C+   +G  +P    L   +   M    Y   IQ K+  I++ L  
Sbjct: 306 GRNYVLRKIIRRALCHGYFIGLQKPFFYKLSELIIYNMKKMNYDFHIQEKIHKIKKILFY 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+++F   L+ GL  L  ++ ++ K++I    + F LYDT+GLP+ I Q   C +     
Sbjct: 366 EEKQFYYILENGLQKLKKIIKNIKKNKICEQKI-FTLYDTYGLPIQITQK-FCKKKNISF 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +I   N  ++  + + +       + +    + + K+K   + F GY +           
Sbjct: 424 NINKLNLIIKNNKKKQKNKEKKKKNFS----FITFKKK---SIFDGYHIYEKK------- 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S I++ I +   +++ + S   + ++ D TPF++++ GQ+GD+G 
Sbjct: 470 ---------------SKIIQIIYKNKNVLKLSKSQLGI-IILDITPFFSKSSGQIGDSGK 513

Query: 534 AIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            + D GI   I    KK +   +H   ++ G +  +  +   I+ + R+ +  NHSATHL
Sbjct: 514 ILNDKGIF--IVQKTKKFDNYILHIGYIKHGCINIKDIVHAKINKKKRKTIQSNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL  I    + Q GS I    LRFD   +K +T  ++  +E+ +N  I +N+P+   
Sbjct: 572 LNAALCKIFSEKIIQKGSFINDKYLRFDFFCNKTLTEEKINYLENIINKKIQKNIPINFV 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I + + A       LL  KY   VR++ ++       S  LC GTH  +TG+I    I++
Sbjct: 632 ITSFKKAKKKKIKFLLEKKYKKTVRIIYIK-----NFSIELCNGTHHDNTGKIGCFKIIA 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
            ++I   I+RI AITG     +   +D+  K L +    +  N+    + I  + +KL  
Sbjct: 687 YNNIGNEIKRITAITGMEVIQYFNDKDKINKKLENLFSTNIHNIYLIAKNIVNKNKKLLE 746

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIML 827
           + I  K K  + +  +   K    N    II   S ++ K L+ + D L++K++S I++L
Sbjct: 747 ENIKLKNKNIIEISKILISKAYLSNKKFLIIEKTSYIEYKLLRKLSDILKEKLKSLIVIL 806

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           +     KK + LI +T++L    N  ++  +   V+ G GGG +
Sbjct: 807 IN-DNNKKINFLISITKNLKHIINLNNIKNIIFSVIPGTGGGKK 849


>gi|316967113|gb|EFV51596.1| putative alanine--tRNA ligase [Trichinella spiralis]
          Length = 962

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 281/778 (36%), Positives = 413/778 (53%), Gaps = 76/778 (9%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           ++IR TF+ +F +K  H+ + SSS+IP  DP+L+FTN+GM  FK IF G   P      +
Sbjct: 8   NAIRQTFINYFTEKRNHQYVHSSSVIPKGDPSLLFTNAGMNQFKPIFLGTADPNSQMASW 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LTKEF
Sbjct: 68  KRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKDICAWAWEVLTKEF 127

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + +LY+T +          D E  ++W  + GL +++++     DNFW M + GPCG
Sbjct: 128 KIPKEQLYVTYFGGSEKCRLQPDVECRQIWLDM-GLPSERVLPFGMKDNFWEMGDIGPCG 186

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSEI +D+ G      L   +++    +EIWNLVF+ + +        LPK  ID G+G
Sbjct: 187 PCSEIHYDRIGNRNAANL--INKDDPDVLEIWNLVFITYNRDKDGSLHPLPKRHIDCGLG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHL---IQASEQV------TGMKYEGNNIVNHRVIVDHLR 280
            ER+ +V+Q K +NYD DLF  +   I  + +V       G + E    + +RV+ DH+R
Sbjct: 245 FERLVSVIQGKKSNYDTDLFVPIFNRIAETAKVRPYMGKVGEEDEQQIDMAYRVVADHIR 304

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC---TEMGSA 336
           + +  ++DG  P N GRGYVLRRI+RR + YA   L        +L+P +     E G  
Sbjct: 305 TLTVALSDGGRPDNCGRGYVLRRILRRGVRYATEKLNAPSGFFANLVPVVVETLVEDGET 364

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +    + E +  E+  F KTL RG  +L   +    KD+++ G VA++LY ++G 
Sbjct: 365 FPELKEDPNSVMEIINEEESLFLKTLSRGSRVLRQEIEKASKDKLIPGVVAWRLYASYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q ++       +++    +  EE R +A+  S    S   + + F++        
Sbjct: 425 PVDLTQ-LMAEESGYKVNM----EEYEECRQQAQMSSSSKFSQLNDVVDFNINA------ 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-NG--------VSSIVKAIVQQGEIVEEAVS 507
            + Y LL G   + +D+     K    LT NG        V   V A+ + GE V E  S
Sbjct: 474 -VNY-LLNGKVPLTDDKP----KYAYRLTENGDDDYEFDEVKCEVLALRKNGEFVSEVCS 527

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G    ++ D+T FYAE+GGQ+ D G   GD    ++ +VQ +  G  VH   V   I R 
Sbjct: 528 GDSCCLICDKTAFYAESGGQIYDEGSMEGDKSEFRVRNVQARG-GYIVHFGEVMGTITRG 586

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              L   +D + R Q+  NH+ATHLL+ AL  +LG  V Q GS +  D LRFD T   P+
Sbjct: 587 S-KLFQNVDQKRRVQVMKNHTATHLLNFALREVLG-QVEQKGSLVLTDRLRFDFTCKAPL 644

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYNDRVRVVSV--- 681
           T  +L  IE  V +I+  ++ +  + +     +A   A L  T    Y D VRVVSV   
Sbjct: 645 TVEQLMKIEQIVANIVNSDVEIYMQEVPL--GVAKTIAGLRSTADETYPDPVRVVSVGTP 702

Query: 682 -----EYEDG---GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                +  DG    + S   CGGTH+  TG +    I SE ++  GIRRI A+T   A
Sbjct: 703 VDALLKDPDGPGAKLASVEFCGGTHLLRTGHLGDFVIASEEAVARGIRRIVALTCHEA 760


>gi|154337657|ref|XP_001565061.1| alanyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 962

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 295/969 (30%), Positives = 485/969 (50%), Gaps = 128/969 (13%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T +        D D EA +LW +   L   +II     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSE+ FD+ G     GL   +++    +EIWNLVFMQFE++       LP+  +DTGMG
Sbjct: 186 PCSEVHFDRIGGRNAAGL--VNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+ ++LQ   +NYD D++  + +A +  TG +          + + +V +RV+ DH+R
Sbjct: 244 LERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++C  +G  +P 
Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPH 363

Query: 340 LIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHG 395
           L   + +  I+  L  E++ F KT + GL   +            +++G  AF L+D +G
Sbjct: 364 LKDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +L  +    +D+  FN  +       +A+ +  G     K +    +     
Sbjct: 424 FPVDLTC-LLAEKDGMTVDLEGFNAEM-------KANQVSAGRVAAAKTFIDAYQLEDLK 475

Query: 456 QFIGYDLLRGSKFMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           +        G+K+  ED   +VL       + +  +S   ++++ G      +  ++V +
Sbjct: 476 KRAIPQTDDGAKYAWEDSTGEVLA------IFDKKNSRFISLLEPG----NDLGAEEVGI 525

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFVHHAIVER---GILRTE 568
           + + T FYAE+GGQ+ DTG  +    R  + +V+K     G  VH   + +     +   
Sbjct: 526 ILNATNFYAESGGQVYDTGRLV--AARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIPLS 583

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVT 622
             + + +DY+ R  ++ NH+ TH L+  L  +L       + V Q GS +  + LRFD +
Sbjct: 584 ALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVMDEMLRFDFS 643

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA------LLGTKYNDRV 676
           H   +++ +L  +E  +N+ I   LPV      RE+   + A+       + G KY D V
Sbjct: 644 HHTKLSNEDLVRVEKLLNEKIQAGLPVY-----REEVPLAAASKINGLRQMFGEKYPDPV 698

Query: 677 RVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI-- 723
            V+S+           E E+   ++   CGGTH+S+  E     I+SE ++  G+RR+  
Sbjct: 699 SVISIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVV 758

Query: 724 ----EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR- 777
               EA    +A + L GQ DE +K  A+   +   +V+ +  ++ +    L L +A R 
Sbjct: 759 ATKAEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNK--KVGDSCVPLVLKNAMRD 816

Query: 778 -------------KLQLNVEDL----------SCHKIADVNFMSHIISE--VDSKELKSV 812
                        KLQ+               + +  A   F  H ++E   + + L++ 
Sbjct: 817 NIDAAIKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAF 876

Query: 813 MDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            D     +   + + L+G   EK  +++ + T  +  + +AV  A+ S      G GGG+
Sbjct: 877 SDGFSSTVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGK 931

Query: 872 PHMAQSGGP 880
           P+ AQSG P
Sbjct: 932 PNAAQSGLP 940


>gi|19074068|ref|NP_584674.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1]
 gi|19068710|emb|CAD25178.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1]
          Length = 864

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 278/803 (34%), Positives = 435/803 (54%), Gaps = 94/803 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R +FL +F    H+++ SSS++P  D TL+FTNSGMV FK    G++K + +A
Sbjct: 2   MWTTEKLRQSFLNYFASKSHKIVNSSSVVPYEDDTLLFTNSGMVQFKKNLLGEKKDLRRA 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            + VQ+C+RAGGKHNDLD+VG+   HHT+FEM+GN+SFG YFKE  I  AW+ L +   L
Sbjct: 62  CS-VQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEGIGFAWEFLVEVLKL 120

Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           D  RLY+T YDE D+E+ ++W+K   L   +II  +  DNFW M +TGPCGPC+EI +D+
Sbjct: 121 DTDRLYVTYYDELDKESGRIWRKY--LPPSRIIAASYKDNFWEMGDTGPCGPCTEIHYDR 178

Query: 180 GECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILP--KMSIDTGMGLERMA 234
                G    S   +++    IEIWN+VF+++   N+    + P  +  IDTG+GLER+ 
Sbjct: 179 ----IGSRDASRLVNKDDPNVIEIWNIVFIEY---NRTTSGLAPLERKCIDTGIGLERLL 231

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGIL 291
           ++L +  +NY ID F  +I+A E     KY     +  V  RV+ DH R+ +  + D + 
Sbjct: 232 SILMDVKSNYLIDSFSTIIKAMESHCSFKYNDKAESTDVAFRVVADHCRTIAVCVYDKVD 291

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            +N+G GYVLRRI+RRA+ YA  +LG  E ++  L+      +G         +L   E 
Sbjct: 292 FSNDGVGYVLRRILRRAVRYAHEVLGLKEGVLGELVVVAAHAIG--------IELESVEC 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E+  F +TL +G+   + +     K   ++G+  F LYDT+G P+D+ + +   R +
Sbjct: 344 VNKEELLFMRTLKKGIERFNRLAESSNK---ISGEDLFLLYDTYGFPVDLTELMAVERNI 400

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F    E  R RA   S                +K   T+ +  D+   SKF  
Sbjct: 401 E-IDYTNF----ESCRQRAIEAS----------------KKSKGTK-LNIDIGMCSKF-- 436

Query: 471 EDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEIVEEAV---SGQKVEVVFDQTPFYA 522
                    PP D +     NGVS++    V   +++ E      G ++ +VFD+T FYA
Sbjct: 437 ---------PPTDDSFKYERNGVSAMFLFAVAGEDVITEPCKIPKGIELGIVFDKTCFYA 487

Query: 523 EAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           E GGQ+GDTG  I     GD     +TD Q    G  VH   ++       + +    DY
Sbjct: 488 ECGGQVGDTGKIIFRDDSGDTGVFNVTDTQAIL-GFVVHKGALDGSASHQALQMY---DY 543

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + RR++  NH+ THLL+  L T++ +   Q GS + PD LRFD    + +T+ EL+ +E 
Sbjct: 544 ELRRRIMRNHTGTHLLNFFLRTVIKTQ--QRGSLVDPDKLRFDF-EGRKLTNEELEDVER 600

Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
            +ND I +   V   I++R  A+ +     +   +Y + VR+++++ +  G+    +CGG
Sbjct: 601 KINDFIKKGAEVKAVILDRRQAMDNPNIVRMQNEEYPENVRIITMQSD--GLIIQEMCGG 658

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV++  +I    IVSE+ + A  RRI  +TG++A  H +  + +L       K+S GNV
Sbjct: 659 THVTNVSDIGKFRIVSETGVSANTRRIVGVTGKKA--HELDAEAEL----CLSKLSMGNV 712

Query: 757 VGRVEEIWEEYR-KLQLIHAKRK 778
           V   + I   YR K+++++ + +
Sbjct: 713 VNVDKAIPLFYRQKIEVLNQRNR 735


>gi|17506981|ref|NP_491281.1| Alanyl tRNA Synthetase family member (ars-2) [Caenorhabditis
           elegans]
 gi|74955985|sp|O01541|SYAC_CAEEL RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=AlaRS A; AltName: Full=Alanine--tRNA ligase
 gi|1938531|gb|AAB52339.1| Alanyl trna synthetase protein 2 [Caenorhabditis elegans]
          Length = 968

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 316/1005 (31%), Positives = 492/1005 (48%), Gaps = 173/1005 (17%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56
            S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P      
Sbjct: 6   ASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAK 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           + +AV T QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT 
Sbjct: 66  LKRAVNT-QKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY++V+  DE        EA  +W+ + G+  ++I+     DNFW M + GP
Sbjct: 125 VYGIPAERLYVSVFGGDEANGVPADSEARDIWRSV-GVPDERILNFGMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CGPCSEI +D+ G      L  + +     +EIWNLVF+QF ++       LP   ID G
Sbjct: 184 CGPCSEIHYDRIGNRDASHLVNADD--PMVVEIWNLVFIQFNREEGGVLKPLPAKHIDCG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           +GLER+  V+Q+KT+NYD D+F+ + +A  + +G++     I         + +RV+ DH
Sbjct: 242 LGLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVVADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337
           +R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+P + + +G  +
Sbjct: 302 VRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYASEKLNAQPGFFASLVPVVISILGETF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGL 396
           PEL +  + + + +  E+++F KTL RG VL    +  L +  +   GDV+++LYDT+G 
Sbjct: 362 PELSRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVQSLPEGTMTFPGDVSWRLYDTYGF 421

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGAT 455
           P D+ Q +   +GL+ +D    N A EE R +A    S G G             K+  T
Sbjct: 422 PADLTQLMAEEKGLS-VD----NTAFEEARRKAIETSSAGTG-------------KFRDT 463

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLT---NGVSSIVK---------AIVQQGEIVE 503
             +  D+   ++  ++        P    T    G  ++ K         AI + G+ V+
Sbjct: 464 --LDLDVHALAELQQKGVPTTDDSPKYAYTFTGEGSDAVYKFEPCVGKILAIRRDGKFVD 521

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +  +G++  ++ D+T FYAE GGQ+ D G          +T V  ++    V +  V  G
Sbjct: 522 QLAAGEEGAILLDRTNFYAEQGGQIYDVGV---------LTKVNDESNEFNVSNCQVRGG 572

Query: 564 IL----RTEMSLVLTIDY-----QNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
            +      E S  +         ++R+QL + NH+ TH+L++AL  +L     Q GS + 
Sbjct: 573 YIVLVGSAEGSFSVGDQVNERFDEDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVA 631

Query: 614 PDGLRFDVTHSKPITSAELKSIE-------DNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           PD +RFD T+   +T  ++K  E       D    + A+N P+       E     G  A
Sbjct: 632 PDRMRFDFTNKAGMTVQQVKKAEEYAQQLIDTKGQVYAKNSPL------GEAKKVKGLRA 685

Query: 667 LLGTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +    Y D VRVV+V           + E+G   +   CGGTH+ +   I  + I SE +
Sbjct: 686 MFDETYPDPVRVVAVGTPVEQLLQNPDAEEGQNTTVEFCGGTHLQNVSHIGRIVIASEEA 745

Query: 716 IRAGIRRIEAITGQRAR-----------------SHLMGQDEKLKSLASFLKVSQGNVVG 758
           I  GIRRI A+TG  A                   H   +DE L +   F  + +     
Sbjct: 746 IAKGIRRIVALTGPEAERAIARADRLTARLEEESKHADKKDELLANKDKFKALQK----- 800

Query: 759 RVEEIWEE--------YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           +++EI +E        +RK  +    + +Q  ++  +  + A V     ++ E  +KEL 
Sbjct: 801 KIQEIVDEANGAQLPYWRKDSIREKAKAIQKTLDGYTKAQQAAV--AEKVLGE--AKELA 856

Query: 811 SVMD------------ALQKKIQSGIIMLVGISKEKKASVLIVVTED------------- 845
           +V +            A  K I + + +L    K+ KA +   V ED             
Sbjct: 857 AVAEQPTVLVHVFAANANSKAIDNALKLL----KDTKAVMAFSVNEDSGKVLCLAKVDKS 912

Query: 846 -LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + +   A +       VL GG GGG+   AQ  G N +K D A+
Sbjct: 913 LVSNGLKANEWVNEVCTVL-GGKGGGKDANAQLTGENVDKLDAAV 956


>gi|321260042|ref|XP_003194741.1| alanine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317461213|gb|ADV22954.1| Alanine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 1012

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 277/776 (35%), Positives = 404/776 (52%), Gaps = 72/776 (9%)

Query: 4   VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + +R TF+++F       H   PSS +IP +D TL+F N+GM  +K +F G   P  + 
Sbjct: 62  AAKVRQTFIDYFVNQPGFEHTFWPSSGVIPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121

Query: 61  VTTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  A+ +AWDLLT
Sbjct: 122 SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKLGALTMAWDLLT 181

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + L + RLY+T +        + D EA ++W+ + G+    I+     DNFW M  TG
Sbjct: 182 RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240

Query: 168 PCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           PCGPCSEI FD+     GG   +   + +    +EIWN VF+Q+ ++   E   LP   +
Sbjct: 241 PCGPCSEIHFDR----IGGREAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHV 296

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVI 275
           DTGMG ER+ +VL   ++NYD D+F  +    +++TG + YEG       + I   +RVI
Sbjct: 297 DTGMGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVI 356

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA--RLLGYTEPLMMHLLPALCTEM 333
            DH+R+ +  I+DG +P  +GRGYVLRR++RR + YA  +           L+P +   +
Sbjct: 357 ADHIRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESL 416

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLY 391
           G  +PE+ +    + E L  E+  F +TL RG  L +     +   K  +L+G   ++LY
Sbjct: 417 GPIFPEVTKKIPELIEILNEEEASFARTLTRGEALFNKYATTAIAEKRTVLSGKDIWRLY 476

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+D+ Q +   RGL  ID  +F +A  E    ++A                 KEK
Sbjct: 477 DTYGFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGG---------------KEK 520

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSG 508
            GA   +  D+   +     D             + + + VK+I    + +    E    
Sbjct: 521 AGAQ--VKLDVHDLAALEANDAVPKTDDSFKYNLDDIKASVKSIYHNSKFLNSTSELPPN 578

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               ++ D+T FYAE+GGQ  DTG  AI D    ++ DVQ    G  +H   +E G +  
Sbjct: 579 TTFGILLDRTNFYAESGGQEYDTGVIAIDDKAEFKVEDVQ-VYNGYVLHIGRMEEGEIEV 637

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              ++ T D   R  +  NH+ TH+L+ AL  +LG H+ Q GS + P  LRFD +H K I
Sbjct: 638 GDEVICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSI 697

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--- 683
              EL  IE   ND I + +PV  + M   +A    G  A+ G  Y D VRVV + Y   
Sbjct: 698 AVPELIKIEAICNDWIKKGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVCLGYPLE 757

Query: 684 ------EDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 ED     +++  CGGTHV+ T +I    I+ ESSI  GIRRI A+TG  A
Sbjct: 758 EISKNVEDARWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDA 813


>gi|71416315|ref|XP_810193.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70874690|gb|EAN88342.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 270/780 (34%), Positives = 410/780 (52%), Gaps = 92/780 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P  +    
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ FD+     GG   +   ++E    IEIWNLVFMQFE+        LPKM +DTG
Sbjct: 184 PCSEVHFDR----LGGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTG 239

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278
           MGLER+ +++Q   +NYD D +  L +A + VTG          + + +  V +RVI DH
Sbjct: 240 MGLERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADH 299

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R  S  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ A+   +G  +
Sbjct: 300 IRCLSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFF 359

Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
             +   + +  I+  L  E+  F KT D GL   +  ++    D  ++GD AF L+D +G
Sbjct: 360 THMQDPRTVQRIKTVLADEEASFAKTWDVGLKHFNKAVAD-AVDNTISGDNAFILHDRYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +    GL  +D+  F+ A+       +A+ L  G     K +  + +     
Sbjct: 419 FPVDLTCLLAENAGLR-VDMNGFHAAM-------KANQLSAGRVAAAKTFLDVHQLEELK 470

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVE- 512
           Q         +K++ ++R               ++ VKAI  +  G  V+  + G++ E 
Sbjct: 471 QMGIAPTEDAAKYIWKNR---------------TAEVKAIFNKKTGTFVDMLMPGEEGEE 515

Query: 513 ---VVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG---- 563
              ++ D T FYAE+GGQ+ DTG   A  D +  ++  V     G  VH   +       
Sbjct: 516 DIGLIMDVTNFYAESGGQIYDTGRIVAAADAV-FEVRKVYNLG-GYVVHLGRMMTTNSTA 573

Query: 564 -ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPD 615
             +    S+ L +DY+ R  ++ NHS TH+L+  L  +L          V Q GS +T +
Sbjct: 574 VPIPVTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEE 633

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYND 674
            LRFD +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D
Sbjct: 634 MLRFDFSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPD 693

Query: 675 RVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V V+SV           E  +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI
Sbjct: 694 PVSVISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKESEVAVILSEEALMKGVRRI 753


>gi|322829672|gb|EFZ32980.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 268/780 (34%), Positives = 409/780 (52%), Gaps = 92/780 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P  +    
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ FD+     GG   +   ++E    IEIWNLVFMQFE+        LPKM +DTG
Sbjct: 184 PCSEVHFDR----LGGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTG 239

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278
           MGLER+ +++Q   +NYD D +  L +A + VTG          + + +  V +RVI DH
Sbjct: 240 MGLERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADH 299

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R  S  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ A+   +G  +
Sbjct: 300 IRCLSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFF 359

Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
             +   + +  I+  L  E+  F KT D GL   +  ++    D  ++GD AF L+D +G
Sbjct: 360 THMQDPRTVQRIKTVLADEEASFSKTWDVGLKHFNKAVAD-AVDNTISGDNAFILHDRYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +L  +    +D+  F+  +       +A+ L  G     K +  + +     
Sbjct: 419 FPVDLTC-LLAEKAGLRVDMNGFHATM-------KANQLSAGRVAAAKTFLDVHQLEELK 470

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVE- 512
           Q         +K++ ++R               ++ VKAI  +  G  V+  + G++ E 
Sbjct: 471 QMGIAPTEDAAKYIWKNR---------------TAEVKAIFNKKTGTFVDMLMPGEEGEE 515

Query: 513 ---VVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG---- 563
              ++ D T FYAE+GGQ+ DTG   A  D +  ++  V     G  VH   +       
Sbjct: 516 DIGLIMDVTNFYAESGGQIYDTGRIVAAADAV-FEVKKVYNLG-GYVVHLGRMMTTNSTA 573

Query: 564 -ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPD 615
             +    S+ L +DY+ R  ++ NHS TH+L+  L  +L          V Q GS +T +
Sbjct: 574 VPIPVTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPESYMEVQQKGSLVTEE 633

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYND 674
            LRFD +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D
Sbjct: 634 MLRFDFSYNSRVSQEDLAKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPD 693

Query: 675 RVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V V+SV           E  +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI
Sbjct: 694 PVSVISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRI 753


>gi|197294554|ref|YP_001799095.1| alanyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853881|emb|CAM11843.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 863

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 253/745 (33%), Positives = 392/745 (52%), Gaps = 76/745 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +IR  +L+FF   GH +  S SLIP  DPTL++ N+G+ P K  F G + P+ + +  VQ
Sbjct: 5   AIRKMWLDFFSSKGHHIEKSFSLIPHQDPTLLWVNAGVTPLKKYFDGSQTPLCKKIVNVQ 64

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQR 123
           KC+R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F     
Sbjct: 65  KCIRT----NDIENVGETARHHTFFEMLGNFSIGDYFKKEAIHYAYELLTSSKWFSFPLD 120

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LYIT Y  D++ +K W ++ G+  D++I + +  NFW +   GP GPC+EIFFD+GE  
Sbjct: 121 KLYITYYPTDKDTYKYWLEL-GIRKDRLIPLKS--NFWQIG-PGPSGPCTEIFFDRGEKY 176

Query: 184 P---GGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMATVL 237
                 L     E  R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER+A +L
Sbjct: 177 DKRNKELIIEDLENNRFIEIWNIVFSQYNCDPKLSIEQYQELPNKNIDTGAGLERLAAIL 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           QE  NN++ DLF  LI++  +++ + Y  +     ++I DHL++  F I DG    NE R
Sbjct: 237 QEADNNFETDLFFPLIKSIAKLSQIPYHQSPKA-FKIIADHLKTLVFAINDGATLTNEKR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVL++++RR+    + L + +P + +L+      M   YPEL + K  I++ L  ++  
Sbjct: 296 GYVLKKLLRRSFIQGKKLNFNQPFLHNLVDPTINMMQDFYPELTKNKNYIKDILLKQEHV 355

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL       +    +  K + L+G   FKLYDT+G+P D++ D      ++ +D   
Sbjct: 356 FLETLKTA----EAKFLYYAKKKSLSGINFFKLYDTYGIPEDVIIDYAKINNVS-VDYKG 410

Query: 418 FNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   LE+ R  ++ + + +      E+ + + +EK   ++F+GY+               
Sbjct: 411 FKFLLEKHRQISQKNHIFISKMNQQEEKFLNFREK---SEFLGYNNF------------- 454

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      + + V  +  +G             +V  QTPFYA  GGQ+ D G   G
Sbjct: 455 ----------ALKTKVIKVFDKG-------------IVLAQTPFYAPMGGQIADEGFIDG 491

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             ++    ++ K   G  +H      G       +   ID + R Q+S +H+ATHLL   
Sbjct: 492 KKVK----NITKLPNGQHLHQI---EGSFYEGQEVFAQIDKKVRDQISYHHTATHLLETV 544

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LGSH+ + GS +  + LR+D  H + +T  +L  IE  +N +I +NL V  + +  
Sbjct: 545 LQNELGSHLEKQGSSVGYNSLRYDFNHFEKLTPEKLIKIEKEINGLIKKNLSVEIQKIPT 604

Query: 657 EDAIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           ++A  + +  L      KY D VR+V +    G   S  LCGGTH S T  +    I+S 
Sbjct: 605 QEAKENYSDILSKNPKAKYKDEVRIVRI----GNDFSIDLCGGTHASETKNLEKFVILSY 660

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ 738
            +I +GI RIEA+ G   ++ L+ +
Sbjct: 661 ETISSGIYRIEAVCGNNIKTALVDK 685


>gi|1321619|gb|AAA99922.1| alanyl-tRNA synthetase [Vibrio cholerae]
          Length = 409

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/397 (52%), Positives = 269/397 (67%), Gaps = 13/397 (3%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK+ F G EK  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDCFLGLEKRAYTRATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT------- 155
           KE AIQ AW+ LT    L + RL +TVY+ D+EAF +W K  G+ AD+IIRI        
Sbjct: 61  KEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKK 120

Query: 156 -TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK 213
             +DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+R+IEIWN VFMQF +   
Sbjct: 121 FDSDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHAD 180

Query: 214 QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR 273
                LPK S+DTGMG+ER++ ++Q   +NY+ID+F+ LI+A+    G +   N  +  R
Sbjct: 181 GTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--R 238

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           V+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG        L+  L   M
Sbjct: 239 VVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVM 298

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT
Sbjct: 299 GTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDT 357

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           +G P D+  D+   RG + ID   F QA+EEQR RAR
Sbjct: 358 YGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAR 393


>gi|152002558|dbj|BAF73582.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 864

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 296/931 (31%), Positives = 453/931 (48%), Gaps = 114/931 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G +KP ++ +T VQK
Sbjct: 6   IRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRITNVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R     ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F     +
Sbjct: 66  CIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEK 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYIT + +D++ ++ W     L  +K   I   +NFW +   GP GPC+EIFFD+G+   
Sbjct: 122 LYITYFFQDQDTYQYW---LDLGVEKNHLIPLKNNFWQIG-PGPSGPCTEIFFDRGKTFD 177

Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQ--ERFI-LPKMSIDTGMGLERMATVLQ 238
                L     E +R+IEIWN+VF Q+    K   E++  LP  +IDTG GLER+A +LQ
Sbjct: 178 SRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERLACILQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
               N++ DLF  LI+A E++T +KY G    N ++I DHL++  F I DG +  NE RG
Sbjct: 238 NTKTNFETDLFFPLIKALEKMTQIKYTGQE--NFKIIADHLKTLVFAINDGAVLTNEKRG 295

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  ++  F
Sbjct: 296 YVLKKLLRRAANEGKKLGLDKPFLHQLVPPTVAMMKDFYKELCTNQEMIAKVLLQQENIF 355

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL          L HL ++  L+G   FKLYDT+G+P D++ D    + +   D   F
Sbjct: 356 EQTLKTA---EKTFLQHLTQN-TLSGKNFFKLYDTYGIPEDLILDYAKKKNIT-TDYQKF 410

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + L + ++ ++ +         ++  F   +    ++FIGY                C+
Sbjct: 411 QELLHDHQNLSKQNQTSQTHMNKQEEAFL--QFLTPSEFIGY------------TNFTCK 456

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + ++K +  +G             +V ++TPFYA  GGQ+ D G    D 
Sbjct: 457 ----------TKVIK-VFDKG-------------IVLEKTPFYANMGGQIEDEGWI--DN 490

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  +T + K   G  +H     +G       +   ID   R Q+S +H+ATHLL   L 
Sbjct: 491 TK--VTKITKLPNGQILHEV---QGKFCEGQEVYACIDKTKRNQISYHHTATHLLEAVLQ 545

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    ++  D
Sbjct: 546 KQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQLSISD 605

Query: 659 AIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A    A  L      KY D+VR+VS++       S  LCGGTH ++T ++    I+S  S
Sbjct: 606 AQKKYATLLEKNQKAKYKDKVRIVSID-----TFSVDLCGGTHATNTKDLEHFTILSCES 660

Query: 716 IRAGIRRIEAITGQRARSHLMGQ-----------DEKLKSL---------ASFLKVSQG- 754
           I +GI RIEA+     +  L  +            +K KSL          SF  ++Q  
Sbjct: 661 ISSGIYRIEAVCNNNCQESLNAKLFPYQNDLHQLTQKAKSLQTQNLIFDVKSFPPITQSY 720

Query: 755 -NVVGRVEEIWEEYRKLQLI-------HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            +++   + I  + + L L        H K+ +Q     L       +  M  I  E   
Sbjct: 721 QDILNYQKHIKAQQQALVLFEKKVLEYHQKKMVQAESNFLPPQITKKM--MLTIEEEKHL 778

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           + LK  M+ +  K    ++ L  +  EK   ++ +     L   N +      A  L  G
Sbjct: 779 EVLKFFMNHIFDKYHLEVLFLSYVQPEK---IVFLCKSKTLHAGNLIK----EAVSLVCG 831

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG   +AQ G       +Q +  V + L+
Sbjct: 832 SGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862


>gi|157869507|ref|XP_001683305.1| alanyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|68224189|emb|CAJ04856.1| putative alanyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 962

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 286/962 (29%), Positives = 482/962 (50%), Gaps = 114/962 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           VS +R  F+++F+K GH  +PSS + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ DE        EA +LW ++  L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDESNGLDPDLEAKELWGQL--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSE+ FD+ G      L   +++    +EIWNLVFMQFE++       LP+  IDTGMG
Sbjct: 186 PCSEVHFDRIGRRNAASL--VNKDDPMVVEIWNLVFMQFERRAGGFLTPLPQKHIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+ ++LQ   +NYD D +  L +A +  TG            + + +V +RV+ DH+R
Sbjct: 244 LERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++CT +G  +P 
Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPH 363

Query: 340 LIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHG 395
           L + + +  I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D +G
Sbjct: 364 LKEPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAVNECRANSSKVISGSEAFVLHDRYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQR---SRARAHSLGLGSGTTEKIWF-SLKEK 451
            P+D+   +L  +    +D+  FN  ++E +    R  A    + +   E++    + + 
Sbjct: 424 FPVDLTC-LLAEKDGMTVDLEGFNTEMKESKVSAGRVAATKTFIDAYQLEELKTRGIPQT 482

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
             A +++  D   G      D+K              +S   ++++ G      +  + V
Sbjct: 483 NDAAKYVWEDYT-GDVLAIFDKK--------------NSKFISLLEPG----NDLGAEGV 523

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568
            ++   T FYAE+GGQ+ DTG  +     +          G  VH   + +     + + 
Sbjct: 524 GIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKAYNVAGYVVHVGNLSKYSASPIPSS 583

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVT 622
             + L +DY+ R  ++ NH+ TH L+  L  +LG      + V Q GS +T + LRFD +
Sbjct: 584 AVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFDFS 643

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
           ++  +++ +L  +E  +N+ I   L V    +  E A   +G   + G KY D V V+S+
Sbjct: 644 YNTKLSNEDLVRVEQLLNEKIQAGLLVYREEVPLEAASKINGLRQMFGEKYPDPVSVISI 703

Query: 682 -----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI------E 724
                      E E+   ++   CGGTH+ +  E     I+SE ++  G+RR+      E
Sbjct: 704 GTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATRLE 763

Query: 725 AITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGR------VEEIWEEYRKLQLIHAKR 777
           A    +A + L  Q DE +K  A+   V   +V+ +      +  + +   +  +  A +
Sbjct: 764 ADKVIKAGAELKRQYDELMKKEATATSVKALSVLNKNVGDSCIPLVLKNEMRENIDAAIK 823

Query: 778 KLQLNVEDLSC----------------HKIADVNFMSHIISE--VDSKELKSVMDALQKK 819
           ++   ++  +                 +  A   F+ H ++E   + + L++  D     
Sbjct: 824 RMNATLKSQAAEARDKAAEAGKCLGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFSST 883

Query: 820 IQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P+ AQSG
Sbjct: 884 VSGPVGVFLIGSDNEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPNAAQSG 938

Query: 879 GP 880
            P
Sbjct: 939 LP 940


>gi|312069509|ref|XP_003137715.1| alanyl-tRNA synthetase [Loa loa]
 gi|307767125|gb|EFO26359.1| alanyl-tRNA synthetase [Loa loa]
          Length = 967

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 312/971 (32%), Positives = 470/971 (48%), Gaps = 114/971 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           IR TF+ FF+   H  + SSS+IP +DPTL+F N+GM  +K IF G  +P      + +A
Sbjct: 9   IRATFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSSEMAKLKRA 68

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLTK   +
Sbjct: 69  VNT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWELLTKVLGI 127

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY++ +        D DEE  ++W  I G+    I+     DNFW M + GPCGPC
Sbjct: 128 PGERLYVSYFGGDDKTGLDADEECRQIWLNI-GVPPSHILSFGMKDNFWEMGDVGPCGPC 186

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEI +D+ G+     L  + +     +EIWNLVF+QF ++       LP   ID G+G E
Sbjct: 187 SEIHYDRIGDRDASHLVNADD--PMVVEIWNLVFIQFNREEDGSLKQLPHKHIDCGLGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282
           R+  VLQ K +NYD D+F  L  A    T ++     +         + +RV+ DH+R+ 
Sbjct: 245 RLVAVLQNKLSNYDTDVFTPLFSAIHNGTKVRPYSGKVGADDVDGIDMAYRVVADHIRTL 304

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341
              ++DG  P N GRGYVLRRI+RR + YA   L  T   +  L+P +   +G  +PEL 
Sbjct: 305 CIALSDGGRPDNTGRGYVLRRILRRGIRYANEKLSATPGFLSSLVPTVVNLLGKTFPELH 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +    + + +  E+++F KTL++G  L     + L +  IL G+VA++LYDT+G PLD+ 
Sbjct: 365 KDPQTVMDIINDEEKQFLKTLNKGRTLFQKAATRLQERNILPGNVAWRLYDTYGFPLDLT 424

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           Q +   RGL    +I F +A E  R +A   S    +   + I   +             
Sbjct: 425 QLMAEERGL----LIDF-EAFENCRQQAAEISAARANKMRDAIDLDVS---------AIS 470

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            L+       D     +  P+   N            I+ A+ +    V+   S     +
Sbjct: 471 ELKNKGIPVTDDSPKYKYYPLPPENQQTMYNFEKCEGIILALRKDKIFVDTLNSEDFGAI 530

Query: 514 VFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           + D+T FYAE GGQL DTG    +  G    +++VQ +  G  V    VE G L     +
Sbjct: 531 ILDRTNFYAEQGGQLFDTGVLREVDKGSEFIVSNVQIRG-GYVVLVGTVE-GELSVGDKV 588

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID + R  +  NH+ TH+L+ AL  ++G  V Q GS + PD LRFD+T  +P+T  +
Sbjct: 589 IQAIDEERRNLIMKNHTGTHVLNFALRKVVG-EVEQKGSLVAPDRLRFDLTSKQPLTYEQ 647

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------E 682
           +K +E+    +I  N  V  +     +A   +G  A+    Y D VR+VSV        +
Sbjct: 648 IKIVEEESQMLIDTNATVFAKNAPLAEARQINGLRAVFEEAYPDPVRIVSVGVPIEELLK 707

Query: 683 YEDGGVHSSA---LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +DG +  +     CGGTH+ + G I  L I  E +I  GIRRI A+TG  A   +   D
Sbjct: 708 DKDGDLAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRAD 767

Query: 740 E------------KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---------- 777
                            + +  K        R+ +++EE  + QL + ++          
Sbjct: 768 RIEQRVEEAHNEIATDRIVTLDKTQFKTASKRIHDLFEEINQSQLPYCRKESIRKKAKAL 827

Query: 778 -----------------KLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQKK 819
                            K+Q    +L      D  +  HI S+  + K L   + +++K 
Sbjct: 828 QKLLDMRDREAKAAVTDKVQQEARELDASLNGDTLYTVHIFSKGANGKVLDGALKSIKK- 886

Query: 820 IQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             S  +M   I+ +  K  V+  V++D+ ++   A +      +VL G GGG     AQ+
Sbjct: 887 --SHAVMGFSINDDIGKVVVVARVSKDVANKGLQASEWISKVCRVLDGRGGGTVIQ-AQA 943

Query: 878 GGPNGNKADQA 888
            G N    ++A
Sbjct: 944 TGNNTELVEEA 954


>gi|120611698|ref|YP_971376.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|205829963|sp|A1TRL4|SYA_ACIAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120590162|gb|ABM33602.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
          Length = 948

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/380 (53%), Positives = 268/380 (70%), Gaps = 10/380 (2%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           S+V+ IR +FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 8   SSVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L 
Sbjct: 68  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWAWELLTEVYGLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSE
Sbjct: 128 KERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  IPGG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+
Sbjct: 188 IFYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF  LIQA+ + TG     N  +  +VI DH+R+++FL++DG++P+
Sbjct: 248 AAILQHVHSNYEIDLFAALIQAAARETGTADLANPSL--KVIADHIRATAFLVSDGVIPS 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E L++
Sbjct: 306 NEGRGYVQRRIVRRAIRHGYKLGRKTPFFHSLVKDLVAQMGDAYPKLREQEQRITEVLKA 365

Query: 354 EDERFGKTLDRGLVLLDGVL 373
           E+ERF +TL  G+ LLD  L
Sbjct: 366 EEERFFETLANGMDLLDSAL 385



 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 257/507 (50%), Gaps = 48/507 (9%)

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L GD+AFKL+DT+G PLD+  D+   RG+  +D   F  A++ Q+++ARA          
Sbjct: 464 LPGDLAFKLHDTYGFPLDLTNDVCRERGVT-VDEDGFKAAMDRQKAQARAAG-------- 514

Query: 442 EKIWFSLKEKYG--ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
            K       +YG  A +F GYD L       E  K++                 AI   G
Sbjct: 515 -KFKMDKALEYGGEANRFSGYDGL------TESAKIV-----------------AIYVDG 550

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
              +   +GQ   VV D TPFYAE+GGQ+GD G     G R  + D  K    ++ HH  
Sbjct: 551 TSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGVIHAGGARFAVDDTLKIRADVYGHHGR 610

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +E G LR   ++   +D   R     NHS TH++H AL  +LGSHV Q GS +  +  RF
Sbjct: 611 LESGTLRVGDAVQAEVDAALRAATMRNHSVTHIMHKALREVLGSHVQQKGSLVNAERTRF 670

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D  H+ P+T A+++ IE  VN+ I  N P   R+M+ E A  +GA  L G KY + VRV+
Sbjct: 671 DFAHNAPVTDAQIREIERRVNEEILANTPTGARVMDIESAQKTGAMMLFGEKYGETVRVL 730

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +        S  LCGGTHV+ TG+I L  +V ES + AG+RRIEA+TG  A ++L   +
Sbjct: 731 DIGT------SRELCGGTHVARTGDIGLFKVVGESGVAAGVRRIEAVTGAGALAYLQQLE 784

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADV--- 794
           + +   A  L+     + GR+ +  E+ + L  ++   K KL  +  D    +  DV   
Sbjct: 785 DTVAKAAGALRAPAAEITGRIGQALEQVKALEREVAALKGKLASSQGDELAGQAVDVKGL 844

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++  +   D+K L+  MD L+ K++S  I+L  +    K  +   VT D + +  A +
Sbjct: 845 KVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLAAVDG-AKVQIAAGVTPDAMAKVKAGE 903

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPN 881
           L    A  + GG GGG+P MA +GG +
Sbjct: 904 LVNFVASQV-GGKGGGKPDMAMAGGTD 929


>gi|313221903|emb|CBY38956.1| unnamed protein product [Oikopleura dioica]
          Length = 934

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 289/777 (37%), Positives = 404/777 (51%), Gaps = 95/777 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            + +R  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK+IF G   P       
Sbjct: 7   ANEVRQQFLDFFKEREHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ ++DLL K +
Sbjct: 67  KSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFDLLNKVW 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY T +        + D EA + W K   L AD+I+     DNFW M +TGPCG
Sbjct: 127 GIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPCG 184

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ +D+     GG   SS    +    +EIWNLVFMQ+++Q  +    LP  S+DTG
Sbjct: 185 PCSELHYDR----IGGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-------YEGNNIVN--HRVIVDH 278
           MGLER+ +VLQ+K  NYD D+F    +  E +TG +        E  + V+  +RV+ DH
Sbjct: 241 MGLERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH------LLPALCTE 332
            R+ S  +ADG  P N GRGYVLRRI+RRA+ Y       E L M       L+  +   
Sbjct: 301 ARTLSIALADGGRPDNVGRGYVLRRILRRAIRYGH-----EKLKMKVDDFVALVDVVVES 355

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           +G A+PEL +     +E L+ E  +F KTLDRG  +L+  +  L   + L GDVA+ LYD
Sbjct: 356 LGDAFPELKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYD 415

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEK 451
           T+G PLD+   I     L     +S  +  EE+R +A   S G  G  TT+    S K+ 
Sbjct: 416 TYGFPLDLTTLIAEEHNLT----LSCEE-FEEERQKAIERSKGADGVATTDD---SHKQN 467

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
           Y A     Y                         N + + V A+    E  +E  S + V
Sbjct: 468 YEANSAGEYTF-----------------------NSIKAKVVALRFNKEFHQECESCE-V 503

Query: 512 EVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +V D+T FYAE GGQ+ D G       D     + +VQ +A   +V H     G L   
Sbjct: 504 GIVLDKTNFYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAG--YVLHVGTLVGKLSVG 561

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPI 627
             + L ID + R  +  NH+ TH+L+  L  +LG     Q GS + P+ LRFD T    +
Sbjct: 562 DEINLNIDTERRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGAL 621

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRI--MNREDAIASGAAALLGTKYNDRVRVVSV---- 681
             A++K +E+  N++I +   V  ++  + +  AI  G  A+    Y D VRVVS+    
Sbjct: 622 KPAQIKQVEEICNEVITRGGAVHCQVSPLAQSKAI-QGLRAMFDETYPDPVRVVSIGVPV 680

Query: 682 ----EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               E    G     S   CGGTH+        L I +E +I  GIRR+ A+TG  A
Sbjct: 681 NELLENPTSGAADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRMIAVTGAEA 737


>gi|255587004|ref|XP_002534095.1| alanyl-tRNA synthetase, putative [Ricinus communis]
 gi|223525858|gb|EEF28289.1| alanyl-tRNA synthetase, putative [Ricinus communis]
          Length = 815

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 287/829 (34%), Positives = 445/829 (53%), Gaps = 81/829 (9%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFK+ AI+ AW+L TKEF L   RL+++VY +D+EAF++W    G+  ++I
Sbjct: 1   MLGNFSFGDYFKKEAIKWAWELSTKEFGLAADRLWVSVYKDDDEAFEIWHNEVGVPTERI 60

Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            ++   DNFW+   TGPCGPCSE+++D      G L     +  R+IE +NLVFMQ+ + 
Sbjct: 61  KKMGEEDNFWTSGITGPCGPCSELYYDF-HPERGFLDVDLGDDTRFIEFYNLVFMQYNKM 119

Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNN 268
           +      L + +IDTG+GLER+A +LQ+  NNY+ DL   +I+   ++  + Y   +   
Sbjct: 120 DDGSLESLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKVSELANLSYSVADDQT 179

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
               ++I DHLR+  FLI+DG+LP+N GRGYV+RR++RR +   RLLG       +L  A
Sbjct: 180 KTKLKIIGDHLRAIVFLISDGVLPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGKGNLDGA 239

Query: 329 LCTEMGSAYPEL---------IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--- 376
               +     EL          +A  ++EE L+ E+ RF +TL+RG  LLD +L      
Sbjct: 240 FIPAIAEKVIELSVHIDSDVKARASRILEE-LQREEFRFVQTLERGEKLLDQMLEDALSS 298

Query: 377 ----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-A 431
               G    L+G   F LYDT+G P++I  ++    G+  ID+  F+  +E+QR +++ A
Sbjct: 299 GQKKGVIPCLSGKDVFLLYDTYGFPVEITTEVAEEHGVK-IDMDGFDIEMEKQRRQSQAA 357

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H++      T +    L E    T+F+GYD L                          ++
Sbjct: 358 HNV---IKLTVEDGGDLSENVSDTEFLGYDTL-----------------------SARAV 391

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIR-----LQITD 545
           + +++  G+ V +   G +VE++ ++TPFYAE+GGQ+GD G   + +G       ++I D
Sbjct: 392 IDSLLVNGKPVIQVPEGSEVEILLNKTPFYAESGGQIGDHGFLYVTEGESKPRAIVEIKD 451

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK    +FVH   +  G+L     +   +D + R++  ++H+ATHLL  AL  ++G   
Sbjct: 452 VQKSLGNVFVHKGTIREGLLEVGREVEAAVDPKLRQRAKVHHTATHLLQSALKKVIGQET 511

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           SQ GS +  D LRFD    +P+   EL+ IE  +N  I     + T++M+  DA  +GA 
Sbjct: 512 SQAGSLVAFDRLRFDFNFHRPLLDTELEEIEALINGWIGDATLLQTKVMSITDAKNAGAI 571

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           A+ G KY ++VRVV V     GV S  LCGGTHVS+T EI    I+SE  I +GIRRIEA
Sbjct: 572 AMFGEKYGEQVRVVEVP----GV-SMELCGGTHVSNTSEIRAFKIISEQGIASGIRRIEA 626

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIHAK----R 777
           + G+    ++  +D ++  L S LKV    V  RVE + EE R    ++  + +K    +
Sbjct: 627 VAGEAFIEYINARDSQITRLCSTLKVKAEEVTTRVENLLEELRIARNEVSAMRSKAAVYK 686

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKEKKA 836
              +  + +S      +  +   + ++D+  LKS  + L   +     ++L     E K 
Sbjct: 687 ASTMASKAVSVGTSKSIRVLVESMDDIDADSLKSAAEYLIDALGDPAAVVLGSYPDEGKV 746

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGG 879
           S++   T         V+L   + K +G      GGGGGGRP+ AQ+GG
Sbjct: 747 SLVAAFTP------GVVNLGVQAGKFIGPIAKLCGGGGGGRPNFAQAGG 789


>gi|157886445|emb|CAP09517.1| novel protein similar to vertebrate alanyl-tRNA synthetase like
           (AARSL) [Danio rerio]
          Length = 996

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 287/794 (36%), Positives = 412/794 (51%), Gaps = 70/794 (8%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           +R  F++FF++  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P      Y+ 
Sbjct: 39  VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 98

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+E+ +
Sbjct: 99  VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 158

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             +RLY++ +          DEE   +W  + GL AD ++     DNFW M ETGPCGPC
Sbjct: 159 PAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGPCGPC 217

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D        L  +++  +  +EIWNLVFMQ+ +++      LP+ S+DTGMGLER
Sbjct: 218 TEIHYDHIGNRNAALLVNADSPD-VVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLER 276

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--------IVNHRVIVDHLRSSS 283
           + TVLQ K +NYD DLF  L+ A  Q +    Y+G           + +RV+ DH+R+  
Sbjct: 277 LVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTIC 336

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             IADG+ P   G   VLRRI+RRA+ ++  +L   E  +  L+P +   +G AYPEL  
Sbjct: 337 VCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYPELNT 396

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401
               I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G PLD++
Sbjct: 397 ESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDLI 456

Query: 402 QDILCARGLAGIDIISFNQ--ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
             +L  +G     I+   +   LE++  +     LGL S   E       EK        
Sbjct: 457 DLMLEEKG----KIVDKKEMKVLEDEYEK-----LGLQSEEDE------GEKLDQLDLHS 501

Query: 460 Y-DLLRGSKFMKEDRKVLCQKPPID---LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
             +L R      +D    C     D   +     + V A+   G +V E   GQ   V+ 
Sbjct: 502 LAELQRQRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVIL 561

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574
           DQT FYAE GGQ  D G    DG++  +  V+  +  G +V H +     LRT   + L 
Sbjct: 562 DQTSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLH 621

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R    INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ 
Sbjct: 622 VDEAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQK 681

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YNDRVRVVS--------V 681
           +E+ V +II QN  V     + E+   S A  + G +     Y D VRVVS        +
Sbjct: 682 VEELVLNIIRQNADV-----HVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLL 736

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQ 738
             E     S  LC GTH+  TG I    +VSE  +  G+ RI A TG    +AR      
Sbjct: 737 ASERAEQTSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQAL 796

Query: 739 DEKLKSLASFLKVS 752
            E+L+SL + + +S
Sbjct: 797 QEELESLEARMGLS 810


>gi|326678670|ref|XP_001332388.4| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Danio rerio]
          Length = 1001

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 287/794 (36%), Positives = 412/794 (51%), Gaps = 70/794 (8%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           +R  F++FF++  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P      Y+ 
Sbjct: 44  VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 103

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+E+ +
Sbjct: 104 VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 163

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             +RLY++ +          DEE   +W  + GL AD ++     DNFW M ETGPCGPC
Sbjct: 164 PAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGPCGPC 222

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D        L  +++  +  +EIWNLVFMQ+ +++      LP+ S+DTGMGLER
Sbjct: 223 TEIHYDHIGNRNAALLVNADSPD-VVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLER 281

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--------IVNHRVIVDHLRSSS 283
           + TVLQ K +NYD DLF  L+ A  Q +    Y+G           + +RV+ DH+R+  
Sbjct: 282 LVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTIC 341

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             IADG+ P   G   VLRRI+RRA+ ++  +L   E  +  L+P +   +G AYPEL  
Sbjct: 342 VCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYPELNT 401

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401
               I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G PLD++
Sbjct: 402 ESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDLI 461

Query: 402 QDILCARGLAGIDIISFNQ--ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
             +L  +G     I+   +   LE++  +     LGL S   E       EK        
Sbjct: 462 DLMLEEKG----KIVDKKEMKVLEDEYEK-----LGLQSEEDE------GEKLDQLDLHS 506

Query: 460 Y-DLLRGSKFMKEDRKVLCQKPPID---LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
             +L R      +D    C     D   +     + V A+   G +V E   GQ   V+ 
Sbjct: 507 LAELQRQRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVIL 566

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574
           DQT FYAE GGQ  D G    DG++  +  V+  +  G +V H +     LRT   + L 
Sbjct: 567 DQTSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLH 626

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R    INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ 
Sbjct: 627 VDEAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQK 686

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YNDRVRVVS--------V 681
           +E+ V +II QN  V     + E+   S A  + G +     Y D VRVVS        +
Sbjct: 687 VEELVLNIIRQNADV-----HVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLL 741

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQ 738
             E     S  LC GTH+  TG I    +VSE  +  G+ RI A TG    +AR      
Sbjct: 742 ASERAEQTSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQAL 801

Query: 739 DEKLKSLASFLKVS 752
            E+L+SL + + +S
Sbjct: 802 QEELESLEARMGLS 815


>gi|224436671|ref|ZP_03657675.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313143169|ref|ZP_07805362.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313128200|gb|EFR45817.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 992

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/601 (37%), Positives = 331/601 (55%), Gaps = 101/601 (16%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65
           IR  +LEFF+ NGH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+ Q
Sbjct: 4   IRALYLEFFKSNGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSSQ 62

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  L
Sbjct: 63  LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSLL 122

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           Y+T+++ D+EA++LW +   + + +I R+   DNFW M +TGPCGPCSEI+ DQG E   
Sbjct: 123 YVTIHESDDEAYELWHE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFFN 180

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       EG+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + + NN+
Sbjct: 181 GEEDYFGGEGDRFLEIWNLVFMQYERSADGSLTPLPKPSIDTGMGLERVIALKEGEINNF 240

Query: 245 DIDLFKHLIQASEQVTGMKYEGN--------------------NIVNHRVIVDHLRSSSF 284
           D  LF  ++Q  +++T   Y  +                    +I + RVI DH R+ +F
Sbjct: 241 DSSLFAPIMQCIKELTSKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADHARAVAF 300

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           L+A G+    EGRGYVLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y  LI+ K
Sbjct: 301 LLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYSYLIERK 360

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN--------------------- 383
             ++E  ++E+ERF +T++ G+ L +  L  L    +L+                     
Sbjct: 361 NALQEQCKAEEERFFETIESGMALFNAELEKLRGYSVLSDKSANLRSPTAALTSSKLLVG 420

Query: 384 --------------------------------GDVAFKLYDTHGLPLDIMQDILCARGLA 411
                                           G++AFKLYDT+G PLD+ QD+L   GL 
Sbjct: 421 SLGNADFSSQSLECQDSHKVDSNKTKEAMHFSGEIAFKLYDTYGFPLDLTQDMLRELGL- 479

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D+  F + ++EQ+ R++AH  G G    +  + +L  ++G  +F+GY+ +        
Sbjct: 480 GVDMQGFEKCMQEQKERSKAHWKGSGDSVKDGDFNALLSEFGENEFVGYESISTE----- 534

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S I+  +    + VE   +GQ+  ++ + TPFY E+GG +GD 
Sbjct: 535 -----------------SKILALLDSNFKRVESLQAGQEGWMMLESTPFYPESGGPIGDK 577

Query: 532 G 532
           G
Sbjct: 578 G 578



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 178/336 (52%), Gaps = 23/336 (6%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +V   +L+T   +   +D  +R ++  +HSATHLLH+AL  ILGSH++Q GS +  + LR
Sbjct: 662 VVATSMLKTGDLVKAQVD-SSRFEIIKHHSATHLLHYALRQILGSHIAQAGSLVEANRLR 720

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H K ++  +L+ IE  VN  I ++ P V   M  + A A GA AL G KY + VRV
Sbjct: 721 FDFSHPKALSVNDLEQIEALVNSKITESSPQVCETMGIDQAKAKGAMALFGEKYGESVRV 780

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +++        S  LCGG H+ +T EI   YIV ESS+ +G+RRIEA+ G+ A  +    
Sbjct: 781 ITLG------DSIELCGGIHIHNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYHYGKAA 834

Query: 739 DEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
            E +KSL   LK   V QG  V +++   +E R+     +  K + +V+ L   ++  V 
Sbjct: 835 LESIKSLKEQLKAQDVLQG--VAKLQNALKEARE-----SANKAKQSVKSLDYEEVNGVK 887

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +   +  V++KE K ++D  + + +   I+LV    E    V +      +    A   
Sbjct: 888 LIVLKLDLVEAKEAKDIIDRAKNENEKVAILLV---TESGGKVSLTAGVKGVSSLKAGAW 944

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGP--NGNKADQAI 889
            +  A++L GG GGGR   A +GG     NK  +A+
Sbjct: 945 VKQVAQIL-GGNGGGRDDFATAGGKVTESNKVQEAL 979


>gi|313229137|emb|CBY23722.1| unnamed protein product [Oikopleura dioica]
          Length = 941

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 300/839 (35%), Positives = 428/839 (51%), Gaps = 95/839 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
            + +R  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK+IF G   P       
Sbjct: 7   ANEVRQQFLDFFKELEHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAKL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ +++LL K +
Sbjct: 67  KSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFELLNKVW 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY T +        + D EA + W K   L AD+I+     DNFW M +TGPCG
Sbjct: 127 GIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPCG 184

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE+ +D+     GG   SS    +    +EIWNLVFMQ+++Q  +    LP  S+DTG
Sbjct: 185 PCSELHYDR----IGGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-------YEGNNIVN--HRVIVDH 278
           MGLER+ +VLQ+K  NYD D+F    +  E +TG +        E  + V+  +RV+ DH
Sbjct: 241 MGLERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ S  +ADG  P N GRGYVLRRI+RRA+ Y    L       + L+  +   +G A+
Sbjct: 301 ARTLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLNMKVDDFVALVDVVVESLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +     +E L+ E  +F KTLDRG  +L+  +  L   + L GDVA+ LYDT+G P
Sbjct: 361 PELKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYGATQ 456
           LD+   I     L     +S  +  EE+R +A   S G  G  TT+    S K+ Y A  
Sbjct: 421 LDLTTLIAEEHNLT----LSCEE-FEEERQKAIERSKGADGVATTDD---SHKQNYEANS 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
              Y                         N + + V A+    E  +E  S + V +V D
Sbjct: 473 AGEYTF-----------------------NSIKAKVVALRFNKEFHQECESCE-VGIVLD 508

Query: 517 QTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +T FYAE GGQ+ D G       D     + +VQ +A   +V H     G L     + L
Sbjct: 509 KTNFYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAG--YVLHVGTLVGKLSVGDEINL 566

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            ID + R  +  NH+ TH+L+  L  +LG     Q GS + P+ LRFD T    +  A++
Sbjct: 567 NIDTERRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQI 626

Query: 633 KSIEDNVNDIIAQNLPVVTRI--MNREDAIASGAAALLGTKYNDRVRVVSV--------E 682
           K +E+  N++I +   V  ++  + +  AI  G  A+    Y D VRVVS+        E
Sbjct: 627 KQVEEICNEVITRGGAVHCQVSPLAQSKAI-QGLRAMFDETYPDPVRVVSIGVPVNELLE 685

Query: 683 YEDGGVH---SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
               G     S   CGGTH+        L I +E +I  GIRR+ A+TG  A       D
Sbjct: 686 NPTSGAADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEK----AD 741

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            + + LA   ++ + +V     E+ E       I AK   + N   +S  K  +V  +S
Sbjct: 742 RQAQRLAKANQLKEKDVNELKAEVKE------AIKAKNTAEANQRAISLGKTIEVAPIS 794


>gi|83775369|dbj|BAE65489.1| unnamed protein product [Aspergillus oryzae]
          Length = 939

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 259/696 (37%), Positives = 375/696 (53%), Gaps = 65/696 (9%)

Query: 76  DLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD---- 131
           DLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+L+TK + LD +RLY+T ++    
Sbjct: 73  DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKIYGLDPQRLYVTYFEGSKE 132

Query: 132 ----EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                D EA +LWK + G+  D I+     DNFW M + GPCGPCSEI +D+     GG 
Sbjct: 133 GGLSPDLEAKELWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCSEIHYDR----IGGR 187

Query: 188 PGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
             S   +++    +EIWN VF+Q+ +++ +    LP   +DTGMG ER+ +VLQ K++NY
Sbjct: 188 NASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGMGFERLVSVLQNKSSNY 247

Query: 245 DIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSSSFLIADGILPANE 295
           D D+F  L Q  + +TG + Y+G   V         +RV+ DH+R+ +F I+DG+ P NE
Sbjct: 248 DTDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHVRTLTFAISDGVAPNNE 307

Query: 296 GRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           GRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ + +  + E L  
Sbjct: 308 GRGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMFPEVKRKQQDVMEILDE 367

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+  F KTLDRG    +          D+ L+G   ++LYDT G P+D+ + +   RGL 
Sbjct: 368 EEISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFGFPVDLTRIMAEERGLR 427

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F    EE RSRA+  S G      + +   + +  G  + +  D+ + +   K 
Sbjct: 428 -IDDTEF----EEARSRAKEASKGQKKAAADTVKLDVHD-LGKLEKMN-DVPKTNDSAKF 480

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           DR              +++ VKAI          E+   G ++ ++ D+T FYAE GGQ 
Sbjct: 481 DR------------GNITAQVKAIYHGKSFHLSTEQIPEGDQLGLILDRTNFYAEQGGQE 528

Query: 529 GDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG  + DG   L++ DVQ  A G  +H   ++ G L     ++   D   R  +  NH
Sbjct: 529 NDTGRIVIDGQAELEVGDVQLYA-GYVLHTGFMKYGSLSVGDEVICEYDELRRWPIRNNH 587

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           + TH+L+ AL  +LG  V Q GS +  + LRFD +H  P+T  +L+ IED   + I QN 
Sbjct: 588 TGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKDLERIEDISTEYIRQNC 647

Query: 648 PVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH-----------SSALCG 695
            V ++ +    A   SG  A+ G  Y D VRVVSV  E   +            S   CG
Sbjct: 648 AVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILKNVKDPRWEKVSIEFCG 707

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           GTHV  TG+I  L I+ ES I  GIRRI A+TG+ A
Sbjct: 708 GTHVQKTGDIKELVILEESGIAKGIRRIIAVTGEDA 743


>gi|327262296|ref|XP_003215961.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Anolis
           carolinensis]
          Length = 988

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 313/987 (31%), Positives = 476/987 (48%), Gaps = 133/987 (13%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           + +R +F+ FFQ K GH+++ SS + P  DP L+F N+GM  FK IF G   P      Y
Sbjct: 38  ARVRQSFIRFFQEKYGHQVVASSPVRPRADPGLLFVNAGMNQFKPIFLGTADPRSEMTRY 97

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A ++AW+LLT+ +
Sbjct: 98  RRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACKMAWELLTEVY 157

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
           ++ +  LY+T +          DEE  ++W    GLS   ++     DNFW M ++GPCG
Sbjct: 158 EIPKDHLYVTYFGGNAALGLSADEETREIWLN-QGLSPSHVLPFEMKDNFWEMGDSGPCG 216

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PC+EI +D    I GG   ++   +     +EIWNLVFMQ+ ++       LP+  +DTG
Sbjct: 217 PCTEIHYDH---IGGGRNAAAMVNKGNPDVVEIWNLVFMQYNREADGRLHQLPQHHVDTG 273

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYEG------NNIVN--HRVIVDH 278
           MGLER+ T+LQ K +NYD DLF  ++ A  +   G  Y+G         VN  +RV+ DH
Sbjct: 274 MGLERLMTILQNKRSNYDTDLFTPILDAIHKGCGGPNYQGLVGEADAGGVNMAYRVVADH 333

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337
           +R+ S  IADG+ P   G   VLR I+RRA+ +   + +  P  + +L+P +   +G AY
Sbjct: 334 VRTLSICIADGVYPGMSGAELVLRHILRRAVRFCSEVLHAPPGFLANLVPVVVEILGDAY 393

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +    +   +   +  F  +L +G  +++  L  +   ++   ++A+ LY   G P
Sbjct: 394 PELHRDTDKVMNIISENEAAFLSSLMQGRHVINRALQQMDHSKVFPVEIAWSLYSNLGFP 453

Query: 398 LDIMQDILCARGL----AGIDIISFNQALEEQRSR----AR----AHSLGL----GSGTT 441
           LD++  +L  +G+    A +D ++   A  + RS+    AR     HSL      G  +T
Sbjct: 454 LDLIALMLEEKGVQLDKAALDCLAQEDAERKARSQQEQSARMLLDVHSLAQLRRDGVPST 513

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           +    S K  Y              +  K+ R V  Q           + V  + + G +
Sbjct: 514 DD---SFKYAY--------------EIGKDGRYVFKQ---------CKATVLMLYKDGSL 547

Query: 502 VEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHH 557
            +E    GQ+  V+ DQT FYAE GGQ  D G  +  G +     +  VQ  A   +V H
Sbjct: 548 QKEVSGGGQRCGVLLDQTCFYAEQGGQAPDQGYMVCGGQQDTFFPVVSVQVSAG--YVIH 605

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            ++    L+    + L +D  +R    +NH+ATHLL+  L  +LG    Q GS +T + L
Sbjct: 606 EVIASEALKAGDQVQLFVDEAHRMACMVNHTATHLLNFVLRQVLGESTEQCGSHVTAEHL 665

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV- 676
           RFDV    P+ +  L+ +E+ + +II +N  V T     E+      + + G +  D V 
Sbjct: 666 RFDVRTQVPVKTEHLQEVENVIQEIIKKNEVVCT-----EEVPLKLTSDIQGLRKLDDVY 720

Query: 677 --------------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         R +  E +D    S  LC GTH+  TG I    I+SE  +  GI  
Sbjct: 721 PDVVRVVSVGVPVKRALVRESKDAMHTSVELCCGTHLLRTGAIQDFTIISERQLVKGISH 780

Query: 723 IEAITGQRA-------------------RSHLMG----QDEKLKSLASFLKVSQGNVV-- 757
           I A+TG++A                   R  L G    + ++L     +L V+  N    
Sbjct: 781 IIALTGEQAKKAREDGRTFAKEVESLTIRVKLGGATIDEAQRLSKEVGYLTVTVYNTAMP 840

Query: 758 -GRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LK 810
             +  E+    + LQ     A RKL+  +     HK+        II +  + E    L 
Sbjct: 841 HWQKRELQATLKALQRAANTAVRKLETRLAAEEAHKLLAKYSREAIIVDTIAVESPSILM 900

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            V++ L  KI +  +ML+      +      V+++ L  F+A D A LS     GG  GG
Sbjct: 901 KVVNQLCAKIPAASVMLLSPQTSGQVFCACQVSKNSLPTFSASDWA-LSVCTQMGGKSGG 959

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
              +A+  G N N   +A+A    + K
Sbjct: 960 SEVVAKGMG-NTNGLQRALATAQEYAK 985


>gi|126632676|emb|CAM56636.1| novel protein similar to vertebrate aminolevulinate delta-synthase
           1 (ALAS1) [Danio rerio]
          Length = 917

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 285/792 (35%), Positives = 409/792 (51%), Gaps = 70/792 (8%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           +R  F++FF++  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P      Y+ 
Sbjct: 2   VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+E+ +
Sbjct: 62  VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 121

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             +RLY++ +          DEE   +W  + GL AD ++     DNFW M ETGPCGPC
Sbjct: 122 PAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGPCGPC 180

Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EI +D  G      L  +  +    +EIWNLVFMQ+ +++      LP+ S+DTGMGLE
Sbjct: 181 TEIHYDHIGNRNAASLVNA--DSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--------IVNHRVIVDHLRSS 282
           R+ TVLQ K +NYD DLF  L+ A  Q +    Y+G           + +RV+ DH+R+ 
Sbjct: 239 RLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTI 298

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341
              IADG+ P   G   VLRRI+RRA+ ++  +L   E  +  L+P +   +G AYPEL 
Sbjct: 299 CVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVANLLGDAYPELN 358

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400
                I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G PLD+
Sbjct: 359 TESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDL 418

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
           +  +L  +G   +D     + LE++  ++       G    +    SL E          
Sbjct: 419 IDLMLEEKGKI-VDKKEM-KVLEDEYEKSEEDE---GEKLDQLDLHSLAE---------- 463

Query: 461 DLLRGSKFMKEDRKVLCQKPPID---LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            L R      +D    C     D   +     + V A+   G +V E   GQ   V+ DQ
Sbjct: 464 -LQRQRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 522

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G    DG++  +  V+  +  G +V H +     LRT   + L +D
Sbjct: 523 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 582

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ +E
Sbjct: 583 EAWRLGCMINHTATHVLNFALRELLGPVVSQRGSHCSANRLRFDFSVKGSLTVSELQKVE 642

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YNDRVRVVS--------VEY 683
           + V +II QN  V     + E+   S A  + G +     Y D VRVVS        +  
Sbjct: 643 ELVLNIIRQNADV-----HVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLAS 697

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740
           E     S  LC GTH+  TG I    +VSE  +  G+ RI A TG    +AR       E
Sbjct: 698 ERAEQTSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQE 757

Query: 741 KLKSLASFLKVS 752
           +L+SL + + +S
Sbjct: 758 ELESLEARMGLS 769


>gi|126310118|ref|XP_001367753.1| PREDICTED: similar to alanyl-tRNA synthetase like [Monodelphis
           domestica]
          Length = 1109

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 284/894 (31%), Positives = 451/894 (50%), Gaps = 113/894 (12%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
           + S IRT FL FF+ ++GH+L+PS+S++P +DP L+F N+GM  FK IF G   P     
Sbjct: 71  SASVIRTAFLHFFRDRHGHQLVPSASVMPRSDPGLLFVNAGMNQFKPIFLGTVDPRSEMA 130

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115
            ++ V   QKCVR GG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT
Sbjct: 131 RFRRVANSQKCVRTGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 190

Query: 116 KEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             +++ Q RL++T +          D E+  +W  + G+ + +++    ++NFW M E G
Sbjct: 191 HIYEIPQDRLWVTYFGGNPPEGLAPDYESRDIWLSL-GVPSSRVLSFGPSENFWEMGEIG 249

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPC+EI +D    + GG+ G  +     +E+WNLVFMQ+ ++      +LP+  +DTG
Sbjct: 250 PCGPCTEIHYD----LSGGV-GPPQ----LVELWNLVFMQYNREADGSLQLLPQRHVDTG 300

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYE--------GNNIVNHRVIVDH 278
           MGLER+  VLQ K + YD DLF  L+ A +Q      Y+        G+  + +RV+ DH
Sbjct: 301 MGLERLVAVLQNKRSTYDTDLFSPLLTAIQQGCRAPPYQGQVGKADGGHTDMAYRVVADH 360

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337
           +R+ S  +ADG+ P   G   VLR+I+RRA+ ++  +    P  +  L+P +   +G AY
Sbjct: 361 IRTLSICMADGVYPGMSGASLVLRQILRRAIRFSSEVLQAPPGFLSSLVPIVVETLGDAY 420

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +    I   +  E+  F  +L+RG  ++D  L  LG   +   +VA+ L    GLP
Sbjct: 421 PELQKNTTQITSLVAEEETAFLSSLERGRRVIDRTLQQLGPSHLFPAEVAWSLSGNLGLP 480

Query: 398 LDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           LD++  +L  +G+  +D     Q A EE + R++A                 + K     
Sbjct: 481 LDLVGLMLEEKGVQ-LDSAGLEQLAQEEAQRRSQAQ----------------QAKPAKKA 523

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPID---------LTNGV-------SSIVKAIVQQGE 500
            +  D+   S+  ++        PP D         L NG        + I++     G 
Sbjct: 524 ELRLDIHALSQLQRQG------VPPTDDSSKYNYSLLPNGSYEFGACEAEIIQLYTLDGA 577

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAI 559
             +    GQ+  ++ D+T FYAE GGQ  D G  I  G + +    +  +  G F+ H +
Sbjct: 578 ATDSVGGGQRCGLLLDKTNFYAEQGGQACDRGYLICKGQQDVLFPVIGAQIYGGFILHEV 637

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +    L+    + L +D + R      H+ATHLL  AL   LG +  Q GS ++P+ LRF
Sbjct: 638 IALETLKVGDQVQLHVDEEWRLGCMKKHTATHLLSWALRQELGPNTQQCGSHLSPERLRF 697

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-- 677
           DV    P+TS +L+++E+ +   + Q+ PV    +  E          L   Y D VR  
Sbjct: 698 DVATLAPLTSEQLQAVEETIRVAVGQDKPVYMAEVALELTTQIPGLRSLDEVYPDPVRVV 757

Query: 678 -------VVSVEYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                  +         + +S  LC GTH+  TG I  L IV E  +  GI R+ A+TG+
Sbjct: 758 SVGVPVAIALAPTSQAALQTSVELCCGTHLLRTGAIGDLTIVGEKPLSKGIVRLVAVTGE 817

Query: 730 RA-RSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +A ++  +GQ+   +  A+  ++ QG  NVV              L  A  +L   V+  
Sbjct: 818 QAQQARDVGQNLAQEVEAASARLHQGSQNVV----------EAQHLSKAVGRLSDTVD-- 865

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISKEKKASVL 839
                      + ++ +   +EL++++  LQ++  + I  L +G++  K   +L
Sbjct: 866 -----------TAVMPQWQRRELQAILKRLQRRANTAIRKLEIGLATAKSREIL 908


>gi|297516502|ref|ZP_06934888.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 358

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 255/357 (71%), Gaps = 12/357 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LIQA  +VTG     N  +  RVI DH+RS +FLIADG++P
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQ 358


>gi|67594831|ref|XP_665905.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis TU502]
 gi|54656773|gb|EAL35675.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis]
          Length = 989

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 286/794 (36%), Positives = 427/794 (53%), Gaps = 95/794 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  F+++F+   H    SS +IP NDPT++F N+GM  FK+IF G  +P  +      V
Sbjct: 14  VRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSKLVRV 73

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A+ LLT+ + + 
Sbjct: 74  ANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQVYGIP 133

Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY T +           DEEA K+W K   L  D+I+   + +NFW MA+TGPCGPC
Sbjct: 134 KDRLYATYFGGDPKLPSCPPDEEAKKIWLKY--LPEDRILSCGSKENFWEMADTGPCGPC 191

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG   SS   ++    IEIWNLVFMQ+ ++       LPK  +DTGMG
Sbjct: 192 SEIHYDR----IGGRDASSLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM------KYEGN--NI-------VNHRV 274
           LER+ ++LQ KT+NYDIDLFK +     QV         +Y G   +I       +++RV
Sbjct: 248 LERLVSILQNKTSNYDIDLFKPIFDQIYQVISSSGVQIPRYSGKVGDIDDPEMIDMSYRV 307

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA----RLLGYTEPLMMHLLPALC 330
           I DH+R+ +  IADG +P+NEGRGYVLRRI+RRA+ Y     +     EP    L+ ++ 
Sbjct: 308 ISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVDSVS 367

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---------I 381
             MG+ Y E+ +   +I+E +  E+++F KTL +G    + V++ L   +         +
Sbjct: 368 NIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQNKKL 427

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
                AF+LY T+G P+D+ + +   +G    D   F   +E        H L    G  
Sbjct: 428 FPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMEN-------HHLA-SEGKN 478

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
            K +  L  K      +  +   G K   +  K   Q     + +  S+++ AI    ++
Sbjct: 479 NKSFDDLILKPDIQNNLIVEF--GLKETDDQYKYQTQ-----IKDFYSNLI-AIFDGNQL 530

Query: 502 VEEA-VSGQKVEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIF 554
           ++   + G+ + ++FD+T FY+E+GGQ+ DTG          +  + Q+ D  KK     
Sbjct: 531 IDATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDETSKFQVIDC-KKFGNYV 589

Query: 555 VHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +H  I+ +G +    E+  ++++DY  R  +  NH+ TH+L+ AL  ILGS   Q GS +
Sbjct: 590 LHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRGSVV 649

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLG 669
            P+ LRFD +  KP+T  +++ IE  V+ II +   V  + +  E +IA       A+ G
Sbjct: 650 DPNRLRFDFSSQKPLTLDQIEEIEKMVSQIIQEKQTVYCQTV--ELSIAKQIPNIRAIFG 707

Query: 670 TKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
             Y D VRV+SV            +  D    S   CGGTHV +T EI+   I+SE  I 
Sbjct: 708 ETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGIA 767

Query: 718 AGIRRIEAITGQRA 731
            GIRRI A+T  ++
Sbjct: 768 KGIRRIVAVTDNQS 781


>gi|281208624|gb|EFA82800.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 958

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 312/990 (31%), Positives = 479/990 (48%), Gaps = 131/990 (13%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +  V+ IR TF++FF  K  H  +PSS ++P +DPTL+F N+GM  FK IF GQ  P  +
Sbjct: 5   VPTVNEIRKTFIDFFVNKCEHTFVPSSQVVPHDDPTLLFANAGMNQFKPIFLGQADPRSE 64

Query: 60  AV-----TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
                     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LL
Sbjct: 65  QAKLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKREAITWAWELL 124

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T  + LD+ RLY + +        + D EA  +W++   L AD+++     +NFW M +T
Sbjct: 125 TDVYKLDKERLYASYFGGAADKGLEPDLEAKSIWEEF--LPADRVLPFGMKENFWEMGDT 182

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI FD+ E   G     + +    IEIWNLVF+Q+ ++  +    LP   +DT
Sbjct: 183 GPCGPCSEIHFDKIEGRTGSQALVNADDPTLIEIWNLVFIQYNREADKSLRPLPNKHVDT 242

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVIV 276
           GMGLER+ +++Q+   NYD D+F  +    ++VTG        V           +RVI 
Sbjct: 243 GMGLERVTSIIQKVGTNYDTDIFGPIFTEIQKVTGFTEPYGGKVGKDDPEQVDMAYRVIA 302

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGS 335
           DH+R+ +F +ADG +P+++GRG VLRRI+RRA+ Y +      P   H L+  +    G 
Sbjct: 303 DHIRTLTFSLADGAIPSSDGRGSVLRRILRRAIRYGKQKLKAPPGFFHRLVDVVVAHFGE 362

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PEL      I   + SE++ F +TLD+G++  + +L     + +++   A  L  + G
Sbjct: 363 FFPELRSRPQHIISVIESEEKMFERTLDKGILEFENILKKTS-NGVISASHAHYLSSSFG 421

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEE------QRSRARAHSLGLGSGTTEKIWFSLK 449
            P+D+   +   +G+  +D+  +   +E+      +R + +   L LG+   E I    K
Sbjct: 422 FPIDLTTLMAEEKGVK-VDLKGYEVLVEKFAEDSRRRQKEKKSELNLGA---EPISILQK 477

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
                T           ++  E ++             V ++VKAI    E++++  +  
Sbjct: 478 RSIQPTN---------DQYKYEQKE-------------VQTVVKAIWTGKELIDQLTAEH 515

Query: 510 K---VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           K   V V+ + T FY E GGQ+ D G     D      T    K  G +V H     G +
Sbjct: 516 KNTLVGVILESTNFYPEQGGQIYDIGNINFVDSQNTAFTVSDCKVFGGYVLHI----GYI 571

Query: 566 RTEMS-------LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +         +  T+DY  R  +  NH++TH+++ AL  +LGS V Q GS +    LR
Sbjct: 572 SDDCDKLAVGDKVETTVDYTRRIPIMSNHTSTHMVNFALRQVLGSTVDQRGSLVDNTRLR 631

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
           FD + +K ++  EL   +  VN++IA+ L V  + +    A    G  A+ G  Y D VR
Sbjct: 632 FDFSSTKGMSKDELVKTDAIVNELIAKQLNVYCKDVELASAKKIYGLRAVFGEVYPDPVR 691

Query: 678 -----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                      + +    +   +S   CGGTH++++ E  L  IVSE ++ AG+RR+ A+
Sbjct: 692 VVSVGVDVNDLLANPSNTEWANYSIEFCGGTHIANSKEAELFTIVSEEAVSAGVRRLFAV 751

Query: 727 TGQRAR----------------SHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYR 768
           TG  A                 + L G+D K  + SL + L+    +   R+ E+ E+  
Sbjct: 752 TGTDASVVYDNNRKLETAFTDAAKLTGKDLKDHVPSLLALLESHPVSASKRI-ELLEKLN 810

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKEL-------------KSVMD 814
            LQ    K       ++L    I+D N  +  II+++   +               ++ D
Sbjct: 811 NLQTTVKKY-----FKELESSSISDSNKVVDEIIAQLTESKAPVHVGVINLGLNNSAITD 865

Query: 815 AL---QKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGG 868
           A+   QKK     IM V   +E KK  VL +V          +       KV    GG G
Sbjct: 866 AIKNVQKKCPDTAIMFVSPDQEKKKVCVLSIVPPTSTAASKGLTANGWVVKVAEQLGGKG 925

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG+  +AQ  G      D A+     F KK
Sbjct: 926 GGKTDVAQGTGSQIENVDNAVEFAKDFAKK 955


>gi|323452905|gb|EGB08778.1| hypothetical protein AURANDRAFT_53556 [Aureococcus anophagefferens]
          Length = 1031

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 272/807 (33%), Positives = 408/807 (50%), Gaps = 109/807 (13%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK---------- 55
           IR TF++      GH   PSSS++P  DPTL+F N+GM  +K+IF G             
Sbjct: 32  IRDTFVQRAGGARGHTHWPSSSVVPHEDPTLLFANAGMNQYKSIFLGLAPRRKRRRATPD 91

Query: 56  ------PVYQAVTTV---------------QKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
                 P+     T+               QKC+RAGGKHNDLD+VG+   HHTFFEMLG
Sbjct: 92  DYNTPLPIPSFGGTIDPKTKMATLKRACNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLG 151

Query: 95  NFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWKKIS 144
           N+SFG YFKE AI++AW+ LT EF LD  RLY+T +            DEE  ++W K  
Sbjct: 152 NWSFGDYFKEEAIRMAWECLTVEFQLDPDRLYVTYFGGDALKAPGVPSDEETRQIWLKY- 210

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIW 201
            + A++++     DNFW M +TGPCGPC+EI +D+     GG   ++    +    IEIW
Sbjct: 211 -VPAERVLPFDAGDNFWEMGDTGPCGPCTEIHYDR----VGGRDAAALVNMDDPDVIEIW 265

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N VF+Q+  ++K     LP   +DTGMG ER+A++LQ + +NYD D+F  L    + V+G
Sbjct: 266 NNVFIQY-NRDKFGLKELPAQHVDTGMGFERLASILQGQMSNYDTDIFTPLFAEIQAVSG 324

Query: 262 --MKYEG--------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
             + Y G           + +RV+ DH+R+ +F I DG +P  +GRGYVLRR++RRA+ Y
Sbjct: 325 CPVAYAGKIGDEDKETKDMAYRVVADHVRTLTFAITDGAVPDTQGRGYVLRRVLRRAVWY 384

Query: 312 AR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
            +  LG  +  +  L+P LC  +G A+PE+++AK  +   L  E+  F +T+D+G    +
Sbjct: 385 GQHFLGAPKGFVYKLVPKLCEVLGEAFPEIVKAKDTVMAVLEGEERDFNRTIDKGARFFN 444

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
                L K     G  AF L  + G PLD+ + +   RG+  +D+  ++ AL+E++ +  
Sbjct: 445 KQAEKLPKGAPFPGSDAFVLSGSLGFPLDLCEIMAEERGMT-VDVAGYHAALKEEQDKNA 503

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT----- 485
           A      +  +     +   +  A            K   E + V   +P   +      
Sbjct: 504 AALAKRKAARSAGADMTCAAEQTAALAA----AGAPKTESEGKYVWNARPAAKVVALYVG 559

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQIT 544
            G       +V   +  + AV+G     V D T FYAE GGQ+ DTG  + D  + L + 
Sbjct: 560 KGGGPKGDGLVDAVDPSKHAVAG----AVLDATSFYAEMGGQVYDTGALLKDDAKILDVE 615

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL--G 602
           DVQ    G +V H     G L+    +   +DY  R +++ NH+ TH+L+ AL  +L  G
Sbjct: 616 DVQ--VYGGYVVHVGAPLGPLKVGDDVACAVDYDRRVRVAPNHTMTHVLNFALREVLLGG 673

Query: 603 SH-------------VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           S               +Q GS +  + LRFD     P+T+ +LK++E  VN+ IA  L V
Sbjct: 674 SEGAKADAEKTGVDRCAQRGSYVDDERLRFDFAWDAPLTADQLKAVEAIVNETIAAGL-V 732

Query: 650 VTRIMNREDAIASGAA--ALLGTKYNDRVRVVSVEYEDGGVHSSA-----------LCGG 696
           V  +    DA  +  +  A+ G  Y D VRVV+V      V ++            LCGG
Sbjct: 733 VDAVETPLDAAMAVESLRAMKGEAYPDPVRVVAVGAPVADVVAAPCGAAWRGMSVELCGG 792

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRI 723
           THV +T + +   ++ E+ I  G+RR+
Sbjct: 793 THVRNTKDAVGFALLEENGIAKGVRRV 819


>gi|313678597|ref|YP_004056337.1| alanine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950312|gb|ADR24907.1| alanine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 880

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 292/915 (31%), Positives = 465/915 (50%), Gaps = 106/915 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF+   H ++ S SLIP NDP+L++ NSG+   KN F+G++ P    +T  
Sbjct: 7   TEIRQKWLDFFESKNHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPAFRLTNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    ++D  +
Sbjct: 67  QKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVLEMDFEK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D+GE   
Sbjct: 123 LYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYDRGEKYD 180

Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+  
Sbjct: 181 SRGIDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLASIMQDVP 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIADGI 290
            NYD DLF ++I+  E+ +  KY   N             N ++I DH+R+    IADG 
Sbjct: 241 TNYDSDLFINIIREIEKYSRYKYIIENYFVKDEHQSEINTNFKIIADHIRTVVNAIADGA 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
             +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E    K +I + 
Sbjct: 301 KVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYDE----KDVI-DA 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F KT+++G +LL+  L +  ++++ +G VAF L +T+G P+++  +IL  +G+
Sbjct: 356 IKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEILHQKGI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFM 469
             +D+ +F  A E+    A A   G  +G  + I   +L +K     F+GY  L  S   
Sbjct: 414 R-VDMEAFELAKEKH---ALASKGGKATGMDKVINSLALIDK-KMDNFVGYSELSAS--- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              S ++K   ++ E+      G    V+ + TPFYA +GGQ  
Sbjct: 466 -------------------SKVLKLFDEENEVESFETGGY---VLLETTPFYATSGGQRH 503

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I    +++I DV K   G  +H      G +     +   +D   R  L  NHS 
Sbjct: 504 DKGFIIQGENKIKIIDVFKDKFGNHIHFV---EGKMNNYEPVSSFVDPNIRIGLERNHSG 560

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K+IED V   I +++  
Sbjct: 561 THLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAIEDLVRSYITKSIDR 620

Query: 650 VTRIMNREDAIASGAAALL--GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                  + A   GA   L  G   + R VRVV       G  +S LCGGTH+S+T ++ 
Sbjct: 621 EYITTTVDKAREMGAIMTLEEGEYMDPRAVRVVRF-----GDITSDLCGGTHLSNTSKLE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-----DEKLKSLASFLKVSQGNVVG--- 758
              I +    +AG+ RI AI+  +  +  + +     +E+L ++   +K  + + V    
Sbjct: 676 SFKITNVEKKQAGVFRIRAISSIKLVNEYLSEVNKKLNEELATIIKKIKELKNDYVAPVI 735

Query: 759 ----------------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
                           R++E+ E Y+  QL+     L+ + E +   KI   N+  +I  
Sbjct: 736 NENEPDIETLNLSINKRIDELREVYK--QLLKESSNLEFDYETVKFDKIN--NYDVYINL 791

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +VD+  +K +  +++ K QSG  + +  SK +K  +L + T        A+D  ++  K+
Sbjct: 792 DVDASSVKLIAASIRDKFQSGKTVAIIGSKNEKELLLAIATR-------AIDANKMFKKL 844

Query: 863 LG--GGGGGGRPHMA 875
                G GGG P +A
Sbjct: 845 SSELNGRGGGAPILA 859


>gi|323331402|gb|EGA72819.1| Ala1p [Saccharomyces cerevisiae AWRI796]
          Length = 648

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/664 (36%), Positives = 360/664 (54%), Gaps = 62/664 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62
            +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P     T 
Sbjct: 11  ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70

Query: 63  ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ +
Sbjct: 71  KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPCG
Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +S    +    +E+WNLVF+QF ++       LP   IDTG
Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278
           MG ER+ +VLQ+  +NYD D+F  L +  +++T ++ Y GN   N        +RV+ DH
Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336
           +R+ +F +ADG +P NEGRGYVLRRI+RR   YAR  + Y        L P L +++   
Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394
           +PEL +    + E L  E+  F KTLDRG  L +   S   K E   L+G   ++LYDT+
Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   +GL  ID   F +A +E      A   G     ++ I  ++ E    
Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDQSDLIKLNVHE---- 477

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510
                         + E       K   +   G +++   I++  +    V+E    G+K
Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523

Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             ++ D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L    
Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++ + D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++
Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642

Query: 630 AELK 633
            ELK
Sbjct: 643 EELK 646


>gi|221057404|ref|XP_002261210.1| alanine--tRNA ligase [Plasmodium knowlesi strain H]
 gi|194247215|emb|CAQ40615.1| alanine--tRNA ligase, putative [Plasmodium knowlesi strain H]
          Length = 1180

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 271/810 (33%), Positives = 425/810 (52%), Gaps = 107/810 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
           +R  F+ +F++  H ++ S+S+IP ND TL+FTN+GM  FK IF GQ         + +A
Sbjct: 196 VRGRFINYFKEKKHTVMESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKNSDLGKLKRA 255

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT  + +
Sbjct: 256 VDT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNVYKI 314

Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D  RLY+T +          ED EA ++W K   L   +I+     +NFW MAETGPCGP
Sbjct: 315 DPNRLYVTYFGGDEKLPGCPEDFEAKRIWLKY--LDESRILPFGMKENFWEMAETGPCGP 372

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D+     GG   SS    +    +EIWN+VFMQ+ +  K+    LP   IDTGM
Sbjct: 373 CSEIHYDR----IGGRDASSLVNMDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGM 428

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVIVDH 278
           GLER+ ++LQ   +NYD DLF  + +  +++     E    VN          +RV+ DH
Sbjct: 429 GLERITSILQNVESNYDTDLFMPIFKQIKEIFNHLPEYGGKVNEEDVGRIDYAYRVVSDH 488

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEMGS 335
           +R  +  I+DG LP NEGR YV+RRI+RRA+   + +   E  ++    L+ ++C  +  
Sbjct: 489 IRCVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVESNVLWFYKLVDSVCQILKK 548

Query: 336 AYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVL---SHLGKDEILNGDVAFKL 390
            + +L     +  I+  ++ E+  F KTL++G+   + ++   ++ G D+I NG  AF L
Sbjct: 549 CFTDLQDENRVNYIKSIIKQEEMVFNKTLEKGVDQFNKIIKKSNNAGGDKIFNGKDAFDL 608

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG---TTEKIWFS 447
           Y ++G P+D++Q I+C      +++  FN+  ++ +  +  ++  +        EK    
Sbjct: 609 YTSYGFPIDLIQ-IMCEEKNFKLNMFEFNELFKKHQLVSDTNNFKINKFFDLPVEKA-HE 666

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV- 506
           LKEK+G      +      ++  +DR+        D+    ++IV  ++  GE   +++ 
Sbjct: 667 LKEKHGVEATEDH---HKYEWNNDDRRN-------DMKKVDTNIV--VIYDGENFIDSIK 714

Query: 507 ---SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
                +K  ++  +T FY E GGQ+ DTG      ++ Q+ +VQK  + + +H  I++ G
Sbjct: 715 TPNDDKKYALILKETNFYYENGGQIYDTGVIENGQMKFQVLNVQKMNDYV-LHIGILKEG 773

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV------------------ 605
            +    S+   +++  R+ ++ NH+ATHLL+  +  +L  +V                  
Sbjct: 774 KIEKNDSVHTYVNFDRRKLVACNHTATHLLNFVIKKVLTEYVVNGEGQMKNGDLVQKKNE 833

Query: 606 ------------SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
                        Q GS +  + LRFD +  + I+   +  IE  VND+I Q L V  R 
Sbjct: 834 KEETGMNSIFNCDQKGSLVDDEKLRFDFSFFQNISDDLVSKIESQVNDLIKQELSVSVRT 893

Query: 654 MN-REDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSS 701
           M+ +E     G  A+    Y D V VV ++ +   +            S  LCGGTH+++
Sbjct: 894 MDLKESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYMCSIELCGGTHIAN 953

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           T  I    I SE SI  GI RI A+T ++A
Sbjct: 954 TKFIKKFIITSEESIGKGIYRINAVTNRKA 983


>gi|71895377|ref|NP_001026227.1| probable alanyl-tRNA synthetase, mitochondrial [Gallus gallus]
 gi|53136426|emb|CAG32542.1| hypothetical protein RCJMB04_28n18 [Gallus gallus]
          Length = 816

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 278/771 (36%), Positives = 400/771 (51%), Gaps = 62/771 (8%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----A 60
           IR  FL FF+ K+GH  LPS+ + P  DPTL+F NSGM  FK +F G   P  +      
Sbjct: 34  IRAAFLRFFEEKHGHRCLPSAPVRPRGDPTLLFVNSGMNQFKPVFLGTAHPRSELAQQRR 93

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW+LLT+ + +
Sbjct: 94  VVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTEVYKI 153

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + DEE   +W  + G+ A+ ++     DNFW M +TGPCGPC
Sbjct: 154 PKDRLYVTYFGGDSSLGLNADEECRDVWLSL-GVPANHVLPFPMKDNFWEMGDTGPCGPC 212

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +EI +D    + GG   S+   +     +EIWNLVFMQ+ ++       LP+  +DTGMG
Sbjct: 213 TEIHYDH---VGGGRNASALVNQGSPDVVEIWNLVFMQYSREVDGNLLPLPQHHVDTGMG 269

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYE---GNNIVNH-----RVIVDHLR 280
           LER+ TVLQ K +NYD DLF  ++ A  +   G +Y+   GN  V H     RV+ DH+R
Sbjct: 270 LERLVTVLQNKRSNYDTDLFTPILDAIHKGCGGPRYQGLVGNADVGHVDMAYRVVADHVR 329

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           +    I DGI P   G   VLRRI+RRA+ + A +L     L+  L+PA+   +G AYPE
Sbjct: 330 TLCVCITDGIYPGLSGAELVLRRILRRAVRFCAEVLHAPRGLLASLVPAVVEVLGDAYPE 389

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +    + +     +  F  +L+RG  +++  +  +        +VA+ LY   G PLD
Sbjct: 390 LKKNADQVMDIFNENEVAFLSSLERGRRIIERTVQQMKPSADFPAEVAWSLYGNLGFPLD 449

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQ 456
           ++  +L  +G+  +D  +FN+ + E   R +AH    G    GT   +     + +   Q
Sbjct: 450 LIDLMLEEKGIR-LDSAAFNELVLEDAKR-KAHGPQEGRQLEGTVVHL-----DVHSMAQ 502

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               ++       K   K L Q    + +   ++I+     Q  + +E  +GQ   V+ D
Sbjct: 503 LQRDNIPATDDSPKYSYK-LGQHGQYEFSPCQATILMLYRDQ-SLQKEVGAGQHCGVILD 560

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-----FVHHAIVERGILRTEMSL 571
           +T FYAE GGQ  D G      IRL   D+    E +     +V H +     LR    +
Sbjct: 561 RTNFYAEQGGQASDRGYL----IRLGQQDILFPVESVRLCGGYVIHEVTAVETLRAGDQV 616

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   R     NH+ATHLL+ AL  +LG    Q GS +T + LRFD     P+T  +
Sbjct: 617 QLFVDEVQRLACMTNHTATHLLNFALRHVLGDSTEQRGSHVTAEQLRFDFNIKGPVTVEQ 676

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ +E  V D+I +N  V    +    A        L   Y D VR+VS+      V +S
Sbjct: 677 LQQVEQVVQDVIKRNEAVYMAEVPLALARRVQGLRALDEGYPDPVRIVSLGVPVETVLTS 736

Query: 692 ----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                      LC GTH+  TG +  L IVSE  +  GI R+ A+TG++A+
Sbjct: 737 NSQAAMQTSVELCCGTHLLQTGAMEDLAIVSERQLVKGISRVIAVTGRQAK 787


>gi|39938791|ref|NP_950557.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|81565108|sp|Q6YQR8|SYA_ONYPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39721900|dbj|BAD04390.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 864

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 294/941 (31%), Positives = 466/941 (49%), Gaps = 134/941 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G + P ++ +T VQK
Sbjct: 6   IRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQTPPFRRITNVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R     ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F     +
Sbjct: 66  CIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEK 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYIT + +D++ ++ W  + G+  + +I + +  NFW +   GP GPC+EIFFD+G+   
Sbjct: 122 LYITYFFQDQDTYQYWLDL-GVEKNHLIPLKS--NFWQIG-PGPSGPCTEIFFDRGKTFD 177

Query: 185 GGLPGSSE------EGERYIEIWNLVFMQFEQQNKQ--ERFI-LPKMSIDTGMGLERMAT 235
              P + E      E +R+IEIWN+VF Q+    K   E++  LP  +IDTG GLER+A 
Sbjct: 178 ---PRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERLAC 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ    N++ DLF  LI+A E++T +KY G    + ++I DHL++  F I DG +  NE
Sbjct: 235 ILQNTKTNFETDLFFPLIKALEKMTQIKYTGQE--SFKIIADHLKTLVFAINDGAVLTNE 292

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  ++
Sbjct: 293 KRGYVLKKLLRRAANEGKKLGLDKPFLHQLVPPTAAMMKDFYKELCTNQEIIAKVLLQQE 352

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             F +TL          L HL ++  L+G   FKLYDT+G+P D++ D    + +   D 
Sbjct: 353 NIFEQTLKTA---EKTFLQHLTQN-TLSGQNFFKLYDTYGIPEDLILDYAKKKNIT-TDY 407

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-----YGATQFIGYDLLRGSKFMK 470
             F + L + ++ ++ +        T +I  + +E+        ++FIGY          
Sbjct: 408 QKFQELLHDHQNLSKQNQ-------TSQIHMNKQEESFLQFLTPSEFIGY---------- 450

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                 C+          + ++K +  +G             +V ++TPFYA  GGQ+ D
Sbjct: 451 --TNFTCK----------TKVIK-VFDKG-------------IVLEKTPFYANMGGQIED 484

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    D  +  +T + K   G  +H     +G       +   I+   R Q+S +H+AT
Sbjct: 485 EGWI--DNTK--VTKITKLPNGQILHEV---QGNFCEGQEVYACIEKTKRNQISYHHTAT 537

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL   L   LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV 
Sbjct: 538 HLLEAVLQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVK 597

Query: 651 TRIMNREDAIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
              ++  DA    A  L      KY D+VR+VS++       S  LCGGTH ++T ++  
Sbjct: 598 IEQLSIPDAQKKYATLLEQNQKAKYKDKVRIVSID-----TFSVDLCGGTHATNTKDLEH 652

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQ-----------DEKLKSLAS--------- 747
             I+S  SI +GI RIEA+     +  L  +            +K KSL +         
Sbjct: 653 FTILSCESISSGIYRIEAVCNNNCQESLNAKLVPYQNDLHQLTQKAKSLQTQNLIFDVKN 712

Query: 748 FLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--- 802
           F  ++Q   +++   + I  + + L L   K+ L+ + +++     A+ NF+   I+   
Sbjct: 713 FPPITQSYQDILNYQKHIKAQQQALVLFE-KKVLEYHQKNMVQ---AESNFLPPQITKKM 768

Query: 803 ------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
                 E   + LK  M+ +  K    ++ L  +  EK   ++ +     L   N +   
Sbjct: 769 MLTIEEEKPLEVLKFFMNHIFDKYHLEVLFLSYVQPEK---IVFLCKSKTLHAGNLIK-- 823

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              A  L  G GGG   +AQ G       +Q +  V + L+
Sbjct: 824 --EAVSLVCGSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862


>gi|66475244|ref|XP_627438.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum
           Iowa II]
 gi|46229265|gb|EAK90114.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum
           Iowa II]
          Length = 1003

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 287/794 (36%), Positives = 429/794 (54%), Gaps = 93/794 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  F+++F+   H    SS +IP NDPT++F N+GM  FK+IF G  +P  +      V
Sbjct: 26  VRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSKLVRV 85

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A+ LLT+ + + 
Sbjct: 86  ANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQVYGIP 145

Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY T +           DEEA ++W K   L  D+I+   + +NFW MA+TGPCGPC
Sbjct: 146 KDRLYATYFGGDPKLPSCPPDEEAKRIWLKY--LPEDRILSCGSKENFWEMADTGPCGPC 203

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     GG    S   ++    IEIWNLVFMQ+ ++       LPK  +DTGMG
Sbjct: 204 SEIHYDR----IGGRDAISLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDTGMG 259

Query: 230 LERMATVLQEKTNNYDIDLFK------HLIQASEQVTGMKYEGN--NI-------VNHRV 274
           LER+ ++LQ KT+NYDIDLFK      H + +S  V   +Y G   +I       +++RV
Sbjct: 260 LERLVSILQNKTSNYDIDLFKPIFDQIHQVISSSGVQIPRYSGKVGDIDDPEMIDMSYRV 319

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA----RLLGYTEPLMMHLLPALC 330
           I DH+R+ +  IADG +P+NEGRGYVLRRI+RRA+ Y     +     EP    L+ ++ 
Sbjct: 320 ISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVDSVS 379

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---------I 381
             MG+ Y E+ +   +I+E +  E+++F KTL +G    + V++ L   +         +
Sbjct: 380 NIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQNKKL 439

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
                AF+LY T+G P+D+ + +   +G    D   F   +E        H L    G  
Sbjct: 440 FPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMEN-------HHLA-SEGKN 490

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
            K +  L  K      I  +LL      + D +   Q     + +  S+++ AI    ++
Sbjct: 491 NKSFDDLILKPD----IQNNLLLEFGLKETDDQYKYQS-QTQIKDFYSNLI-AIFDGNQL 544

Query: 502 VEEA-VSGQKVEVVFDQTPFYAEAGGQLGDTG-----CAIGDGIRL-QITDVQKKAEGIF 554
           +    + G+ + ++FD+T FY+E+GGQ+ DTG         D + + Q+ D  KK     
Sbjct: 545 LNATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDEVSIFQVIDC-KKFGNYV 603

Query: 555 VHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +H  I+ +G +    E+  ++++DY  R  +  NH+ TH+L+ AL  ILGS   Q GS +
Sbjct: 604 LHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRGSVV 663

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLG 669
            P+ LRFD +  KP+T  +++ IE  +N II +   V  + +  E +IA       A+ G
Sbjct: 664 DPNKLRFDFSSQKPLTLDQIEEIEKMINQIIQEKQTVYCQTV--ELSIAKQIPNIRAIFG 721

Query: 670 TKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
             Y D VRV+SV            +  D    S   CGGTHV +T EI+   I+SE  I 
Sbjct: 722 ETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGIA 781

Query: 718 AGIRRIEAITGQRA 731
            GIRRI A+T  ++
Sbjct: 782 KGIRRIVAVTDNQS 795


>gi|303388536|ref|XP_003072502.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301642|gb|ADM11142.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506]
          Length = 864

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 273/798 (34%), Positives = 434/798 (54%), Gaps = 84/798 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R +FL++F    H+++ SSS+IP  D +L+FTNSGMV FK    G+   + +A
Sbjct: 2   MWTTEKLRRSFLDYFASKSHKIVSSSSVIPFEDDSLLFTNSGMVQFKKNLLGERDDLRRA 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            + VQ+C+RAGGKHNDLD+VG+   HHT+FEM+GN+SFG YFKE AI  AW+ L     L
Sbjct: 62  CS-VQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEAIGFAWEFLVDVLKL 120

Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++ +LY+T Y+E D+E+  +W K   L +++++  +  DNFW M +TGPCGPC+EI +D+
Sbjct: 121 NKDKLYVTYYEELDKESGNIWLKY--LPSERVLSASYKDNFWEMGDTGPCGPCTEIHYDR 178

Query: 180 GECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILP--KMSIDTGMGLERMA 234
                G    S   +++    IEIWN+VF+++   N+    ++P  +  IDTG+GLER+ 
Sbjct: 179 ----IGNRDASELVNKDDPNVIEIWNIVFIEY---NRTISGLVPLERKCIDTGIGLERLL 231

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           ++L +  +NY ID F  +I+A E     KY   E +  V  RV+ DH R+ +    D + 
Sbjct: 232 SILIDVRSNYLIDSFAVIIKAIEDRCNFKYNDTEESIDVAFRVVADHCRTIAVCTYDKVD 291

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            +N+G GYVLRRI+RRA+ YA  +LG  E ++  L+      +G      I+ K +  + 
Sbjct: 292 FSNDGVGYVLRRILRRAVRYAHEVLGLKEGVLGELVGIAAHAIG------IELKSV--DC 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E+ +F KTL +G+     +  + GK   ++G+  F LYDT+G P+D+ + +   R +
Sbjct: 344 VNKEELQFMKTLKKGIERFHKLAENNGK---ISGEDLFLLYDTYGFPVDLTEIMAKERNI 400

Query: 411 AGIDII---SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
             ID     SF Q   E    ++   L + +G                          SK
Sbjct: 401 K-IDYTNFESFKQKAVEISKMSKGMKLNIDAGLQ------------------------SK 435

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F + D      K  I+ T       K I+ +   + E   G+++ +VFD+T FYAE GGQ
Sbjct: 436 FPRTDDSFKYTKNSINATFFFGIEGKEIITKPNEIPE---GRELGLVFDKTCFYAECGGQ 492

Query: 528 LGDTGCAI-GDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           +GDTG  I  DG +      + D Q   +G  VH  I+E       + +    D + R++
Sbjct: 493 VGDTGKIIFYDGEKDVGVFNVMDTQ-AIKGFVVHKGILEGSASYQALQMY---DQELRKK 548

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ THLL+  L TI+     Q GS + P+ LRFD    + +T+ EL+ +E  VN+ 
Sbjct: 549 IMKNHTGTHLLNFFLRTII--QTEQRGSLVDPEKLRFDF-EGRKLTNQELEEVEKKVNEF 605

Query: 643 IAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I  N  V    ++RE A+ S     +   +Y ++VRV++++    G+    +CGGTHV++
Sbjct: 606 IQSNTDVEAITLDREQAMESPNIVRMRNEEYPEKVRVITMKA--NGLTIEEMCGGTHVTN 663

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I    I+SE+ + A  RRI A+TG++A      Q+  +++     K+S G VV   +
Sbjct: 664 VSDIGKFRIISETGVSANTRRIVAVTGKKA------QELDMEAEIYLSKLSIGEVVNVDK 717

Query: 762 EIWEEYR-KLQLIHAKRK 778
            I   YR K+++++ K K
Sbjct: 718 TIPLFYRQKVEVLNQKNK 735


>gi|194246643|ref|YP_002004282.1| alanyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807000|emb|CAP18435.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 861

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/740 (33%), Positives = 396/740 (53%), Gaps = 85/740 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I+  +L FF   GH    S SLIP NDPTL++ N+G+ P K  F G    V   +  +QK
Sbjct: 6   IKNMWLNFFINKGHYQENSFSLIPENDPTLLWVNAGITPLKKYFNGSLPVVNSRIVNIQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRR 124
           C+R     ND++NVG+T+ HHTFFEMLGNFS G YFK+ AI  A++LL  +  F  D  +
Sbjct: 66  CLRT----NDIENVGKTSTHHTFFEMLGNFSIGNYFKKEAIDFAYELLMSKQWFGFDSNK 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180
           +YIT Y +D E   LW K   +  + +I + +N  FW++ + GPCGPC+EIFFD+G    
Sbjct: 122 IYITYYYKDIETLNLWLK-KDIHPEHLISLESN--FWNIGQ-GPCGPCTEIFFDRGSKYH 177

Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQ--FEQQNKQERFI-LPKMSIDTGMGLERM 233
               E I   +P +     R++EIWN+VF Q  F  +NK+  +  LP  +IDTG GLER+
Sbjct: 178 PKGKELIKKDIPNN-----RFVEIWNIVFSQYNFNPENKKNIYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ+  NN++ D+F  +IQ    ++ +KY+       +VI DH+R+  F I DG++ A
Sbjct: 233 ACILQDVENNFETDIFFPIIQKISYLSSIKYQNQEAF--KVISDHIRTLVFAIGDGVIFA 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N+GRGYVL++I+RRA+   ++L + +P +  L+P +  +    YP+L + + ++E+ +  
Sbjct: 291 NDGRGYVLKKILRRAIQKGKILNFKKPFLYKLIPIVVKQNQFFYPKLKEYQSILEKIIYK 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+++F   L+      +  + +L K+  L+G+  FKLYDT+G+P +I+ +    +G   I
Sbjct: 351 EEKKFFDMLEN----CEEKILNLIKNNFLSGEQYFKLYDTYGIPKEIILNYCEQKGFI-I 405

Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F + LE  ++ ++ +    L        + + K+K   + FIGY++L         
Sbjct: 406 DNDGFIKKLESHKNLSKLNQHFKLSIQKKNDKFLNFKDK---SNFIGYNILETK------ 456

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           + ++K       I EE        ++ ++TPFY   GGQ+ D G
Sbjct: 457 ----------------TKVIK-------IFEEG-------IILEKTPFYPNMGGQINDKG 486

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   + +  + +   G  +H   V+  +   +  ++  ID+  R+Q+S++H+ATHL
Sbjct: 487 FINN----IPVKKIIRLHHGQLLHQ--VQSDLFYEDQEVIAKIDFNARKQISLHHTATHL 540

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  A+  ILG H+ Q GS I  + LR+D  H + I   ++   E  VN  I +   V+ +
Sbjct: 541 LQDAIILILGKHIEQKGSFIGDNLLRWDFNHYEKIKPQDILKFEIQVNKWIQKKTNVIIK 600

Query: 653 IMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +   DA            KY + VR+V ++      +S  LC GTH  +T ++  + I+
Sbjct: 601 EILFSDAKKIPNIKYFKDKKYPEIVRIVQMD-----DYSITLCAGTHAKNTKDLKKIIIL 655

Query: 712 SESSIRAGIRRIEAITGQRA 731
           S + I +GI RIEA  G  A
Sbjct: 656 SCNLISSGIYRIEASVGLNA 675


>gi|255520943|ref|ZP_05388180.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
          Length = 523

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/552 (42%), Positives = 326/552 (59%), Gaps = 59/552 (10%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173

Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           +D+G          E  PGG      E ERY+EIWNLVF QF          LPK +IDT
Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F
Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+    
Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L  +    ++I+ G   FKLYDT G P+++ +
Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461
           +     GL  +D   F   ++EQR RAR+    + S   + ++  +L EK   + F+GY 
Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGY- 462

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                + T  VS I+  ++Q   +VEE  +G + +V+F +TPFY
Sbjct: 463 ---------------------NSTEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500

Query: 522 AEAGGQLGDTGC 533
           AE+GGQ+ D G 
Sbjct: 501 AESGGQVADKGT 512


>gi|85057696|ref|YP_456612.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123518184|sp|Q2NJ60|SYA_AYWBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84789801|gb|ABC65533.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 864

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 253/744 (34%), Positives = 390/744 (52%), Gaps = 84/744 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +++FF    H +  S SLIP N+  L++ N+G+ P K  F G + P ++ +T VQK
Sbjct: 6   IRQMWIKFFASKNHHIEKSFSLIPRNEDNLLWVNAGITPLKKYFDGTQTPSFRRITNVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R      D+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F     +
Sbjct: 66  CIRT----KDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFGFPLEK 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYIT + +D++ ++ W  + G++ + +I +   DNFW +   GP GPC+EIFFD+G+   
Sbjct: 122 LYITYFFQDQDTYQYWLDL-GVNKNHLIHL--KDNFWQIG-PGPSGPCTEIFFDRGKTFD 177

Query: 185 GGLPGSSE------EGERYIEIWNLVFMQFEQQNKQ--ERFI-LPKMSIDTGMGLERMAT 235
              P + E      E +R+IEIWN+VF Q+    K   E++  LP  +IDTG GLER+A 
Sbjct: 178 ---PRNKELIIEDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERLAC 234

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ    N++ DLF  LI+A E++T + Y G    + ++I DHL++  F I DG +  NE
Sbjct: 235 ILQNTKTNFETDLFFPLIKALEKMTQITYTGQE--SFKIIADHLKTLVFAINDGAVLTNE 292

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  ++
Sbjct: 293 KRGYVLKKLLRRAANEGKKLGLEKPFLYKLVPPTVAMMKDFYKELCTNQEMIAKVLLQQE 352

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             F KTL          L HL ++  L+G   FKLYDT+G+P +++ D    + +   D 
Sbjct: 353 NIFEKTLKTA---EKTFLQHLTQN-TLSGKNFFKLYDTYGIPENLILDYAKKKNIT-TDY 407

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + L EQ++ ++ +     +   ++  F        ++FIGY               
Sbjct: 408 QKFQELLHEQQNLSKKNQTSQTNMNKQEEAFL--HFLTPSEFIGY--------------- 450

Query: 476 LCQKPPIDLTN-GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                    TN    + V  +  +G             +V ++TPFYA  GGQ+ D G  
Sbjct: 451 ---------TNFACKTKVIKVFDEG-------------IVLEKTPFYANMGGQIEDEGWI 488

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    ++T + K   G  +H     +G       +   ID   R+Q+S +H+ATHLL 
Sbjct: 489 DNN----KVTKITKLPNGQILHEF---KGNFCEGQEVYACIDKTKRKQISYHHTATHLLE 541

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L   LG+H+ + GS +    LR+D  H + IT   L  IE  VN +I + +PV    +
Sbjct: 542 VVLQKQLGNHIKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKRVPVKIEQL 601

Query: 655 NREDAIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + +DA    A  L      KY D+VR+V+++       S  LCGGTH ++T ++    I+
Sbjct: 602 SIQDAQKKYATLLEQNQKAKYKDKVRIVNID-----TFSVDLCGGTHATNTKDLEHFTIL 656

Query: 712 SESSIRAGIRRIEAITGQRARSHL 735
           S  SI +GI RIEA+  +  +  L
Sbjct: 657 SYESISSGIYRIEAVCNKNCQESL 680


>gi|258575517|ref|XP_002541940.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237902206|gb|EEP76607.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 931

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 274/782 (35%), Positives = 402/782 (51%), Gaps = 107/782 (13%)

Query: 22  LLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTVQKCVRAGGKHND 76
           L+PSSS++P +DPTL+F N+GM  +K+IF G   P       +     QKC+RAGGKHND
Sbjct: 41  LVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAHLKRAHNSQKCIRAGGKHND 100

Query: 77  LDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY------ 130
           LD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +WDLLTK + L+  RLY+T +      
Sbjct: 101 LDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTKVYGLEPDRLYVTYFEGNKDA 160

Query: 131 --DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP 188
             + D E   LW  + G+  D I+     DNFW M + GPCGPCSE+ +D+     GG  
Sbjct: 161 GIEPDLETKDLWLGV-GVKEDHILSGNMKDNFWEMGDQGPCGPCSEVHYDR----IGGRN 215

Query: 189 GS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            +   + +    +EIWN VF+Q+ +++++    LP   +DTG+G ER+ +VLQ+K++NYD
Sbjct: 216 AAHLVNMDDPNVLEIWNNVFIQYNRESEKILRPLPNKHVDTGLGYERLVSVLQDKSSNYD 275

Query: 246 IDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLIADGILPANEG 296
            D+F  L     ++TG++ Y G       + I   +RV+ DH+R+ +F I+DG  P NEG
Sbjct: 276 TDVFSPLFDVIREITGVRPYAGKFGEEDVDGIDTAYRVVADHVRTLTFAISDGAAPNNEG 335

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV                              T+MG  +PE+ + +  + E L  E+ 
Sbjct: 336 RGYV-----------------------------WTQMGDMFPEIKKKQTDVMEILDEEEI 366

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
            F KTLDRG    + + +   K+     L+G   ++LYDT G P+D+ Q +   RGL+ I
Sbjct: 367 SFAKTLDRGERQFE-IYAQQAKESGSGKLHGADVWRLYDTFGFPVDLTQLMAEERGLS-I 424

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL--LRGSKFMKE 471
           D    N   EE R +A+  S G     ++ +  ++           +DL  L      K 
Sbjct: 425 D----NTEFEEARLKAKEASKGQAKAASDLLKLTV-----------HDLGKLEKDNVPKT 469

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKVEVVFDQTPFYAEAGGQL 528
           D      +        + S + +I    E V       +G+++ ++ D+T FYAE GGQ 
Sbjct: 470 DDSAKFGR------GNIQSQILSIYHGKEFVASTNGISAGEQIGIILDKTNFYAEQGGQE 523

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT---EMSLVLTIDYQNRRQLSI 585
            D G  I DG R             FV +A   R + +    ++   L +    R ++S 
Sbjct: 524 YDIGKIIVDGHRGVTFQFGVPFLRPFVFYAKQARQLPQATDGKLQERLLLTRPQRHEVSN 583

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   I+ ++L+ IE    + I Q
Sbjct: 584 NHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTEYIRQ 643

Query: 646 NLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------------DGGVHSSA 692
           N  V ++ +    A   +G  A+ G  Y D VRVVSV  E              GV S  
Sbjct: 644 NCAVYSQDVPLAKAREITGVRAVFGETYPDPVRVVSVGVELDEILKDVKDPRWKGV-SIE 702

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + L  F K+ 
Sbjct: 703 FCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGKDAHEVQRIAREFGERLNKFEKME 762

Query: 753 QG 754
           QG
Sbjct: 763 QG 764


>gi|309800688|ref|ZP_07694829.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308115695|gb|EFO53230.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 730

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 275/773 (35%), Positives = 409/773 (52%), Gaps = 81/773 (10%)

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQF 208
           I   DNFW +   GP GP +EIFFD+GE       GL   +E  E +RYIEIWN+V  QF
Sbjct: 9   IPIEDNFWEIG-AGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQF 67

Query: 209 EQQNKQERFI---LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
                  R     LP  +IDTG GLER+  V+Q    N++ DLF  +I+  E+++G  Y+
Sbjct: 68  NADPAVPRSQYKELPHKNIDTGAGLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYD 127

Query: 266 --GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
             G+N+ + +VI DH+RS SF I DG LP NEGRGYVLRR++RRA  + + LG  EP + 
Sbjct: 128 QDGDNM-SFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLY 186

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEI 381
            L+P +   M S YPE+++ +  IE+ ++SE+E F +TL  G     G+++ L +    +
Sbjct: 187 KLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSV 246

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH-----SLGL 436
           + G   FKLYDT+G P+++ ++I    G+  +D   F  A++EQ+ RARA      S+G+
Sbjct: 247 IAGQDVFKLYDTYGFPVELTEEIAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGM 305

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
            + T + I       Y A+Q                                S +V  + 
Sbjct: 306 QNETLQNITVESVFNYNASQL------------------------------SSKLVAIVA 335

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIF 554
              E+  E VS     ++F +TPFYAE GGQ+ D G  +     +   +TDVQK   G  
Sbjct: 336 DNAEV--ENVSEGTASLIFAETPFYAEMGGQVADHGQILDAQGNVVATVTDVQKAPNGQA 393

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H   V    L       L ID   R ++  NH+ATHLLH AL  ILG H +Q GS    
Sbjct: 394 LHTVEV-LAPLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEV 452

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           + LRFD TH + +T  EL++IE  VN+ I + + V T   + + A   GA AL G KY  
Sbjct: 453 EFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAIAVKTVETDIDTAKEMGAMALFGEKYGK 512

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VRVV++     G +S  LCGGTHV +T EI L  IV E  I +G RRI A+TG+ A   
Sbjct: 513 EVRVVTI-----GDYSVELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEA 567

Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQL----------NV 783
              Q++ LK +A+ LK  Q   V  +VE + E+ R+LQ  +A+ K +           NV
Sbjct: 568 YREQEDALKEVAATLKAPQLKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNV 627

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           ++ + H+     +++  +S  D+  L++  D  ++K  S +++LV    +K   ++   T
Sbjct: 628 QEANGHR-----YIASQVSVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKT 682

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +D+    +A ++ +  A ++  G GGG+P MA +GG N  K  + +  VA  L
Sbjct: 683 KDV----HAGNVIKELAPIV-DGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 730


>gi|148691494|gb|EDL23441.1| alanyl-tRNA synthetase like [Mus musculus]
          Length = 984

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 297/907 (32%), Positives = 462/907 (50%), Gaps = 139/907 (15%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 95  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    + GG+ GS +     +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYD----LAGGV-GSPQ----LVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G            EG     +RV+ DH+R
Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +    P  +  L+P +   +GSAYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384

Query: 340 LIQ--AKLLIE-ETLRSEDE-RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDT 393
           L +   K+LIE  +L SEDE  F  +L RG  ++D  +  LG  ++   +VA+   L   
Sbjct: 385 LEKNSVKVLIEIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGN 444

Query: 394 HGLPLDIMQDILCARGL----AGIDIISFNQAL---------EEQRSRARAHSLG----L 436
            G+PLD+++ +L  +G+    AG++ ++  +A          +E R     H+L      
Sbjct: 445 LGIPLDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQ 504

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
           G  TT+        KY  T     D   G          LC+          + +++   
Sbjct: 505 GIPTTDD-----SPKYNYTLHPNGDYEFG----------LCE----------ARVLQLYS 539

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFV 555
           + G  V    +GQ+  ++ D+T FYAE GGQ  D G  +  G +  +  V   +  G F+
Sbjct: 540 ETGTAVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFI 599

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
            H  +    L+    + L +D   R    + H+ATHLL  AL   LG    Q GS + P+
Sbjct: 600 LHEAMAPERLQVGDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPE 659

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFDV     +T+ +L+++E  V +++ Q+ PV       E+   +  A + G +  D 
Sbjct: 660 RLRFDVATQTLLTTEQLRTVESYVQEVVGQDKPVFM-----EEVPLAHTARIPGLRSLDE 714

Query: 676 VRVVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSES 714
           V      Y D                      +H+S  LC GTH+ STG +  L I+ E 
Sbjct: 715 V------YPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGER 768

Query: 715 SIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            +  GI R+ AITG++A ++  +GQ    +  A+  ++SQG+            R L   
Sbjct: 769 QLVKGITRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGS------------RDLPEA 816

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISK 832
           H   +L  ++  L+  ++A+    S +I +   +EL++ +  LQ++  + I  L  G + 
Sbjct: 817 H---RLSKDIGRLT--EVAE----SAVIPQWQRQELQTTLKMLQRRANTAIRKLEKGQAT 867

Query: 833 EKKASVL 839
           EK   +L
Sbjct: 868 EKSQELL 874


>gi|258616275|ref|ZP_05714045.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 632

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/630 (39%), Positives = 366/630 (58%), Gaps = 53/630 (8%)

Query: 158 DNFWSMAETGPCGPCSEIFFDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQ 210
           DNFW +   GPCGP +EIF+D+GE         P   PG   E ERY+EIWNLVF +F  
Sbjct: 5   DNFWDIG-AGPCGPDTEIFYDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNH 61

Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI 269
           +       LP  +IDTGMGLERM +++Q+ + N++ DLF  +I A E+++  +KY  N +
Sbjct: 62  KPDNTFEPLPHKNIDTGMGLERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPV 121

Query: 270 --VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
             ++++VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P
Sbjct: 122 TDISYKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVP 181

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGD 385
            +   M S YPE++Q K  IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L G 
Sbjct: 182 VVGEIMVSYYPEVLQQKEFIEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGK 241

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKI 444
             FKLYDT+G P+++ +++    GL  +D   F + ++ QR RAR A S     G    +
Sbjct: 242 DIFKLYDTYGFPVELTEEVAEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL 300

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
              +K +   ++FIGY         + D ++L                  ++ +GE +  
Sbjct: 301 LTDIKVE---SKFIGY------TEQESDSQLL------------------VIVKGESLLN 333

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVER 562
            V+  + +++FDQTPFYAE GGQ+ D G  + +   I   +TDVQK   G F+H   V +
Sbjct: 334 EVAEGEAQMIFDQTPFYAEMGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-K 392

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             +    +  L ID   R ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD T
Sbjct: 393 APMSEGQTYHLLIDQSMRNRIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFT 452

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           H   ITS EL  +E  VN+ I + +PV T   + + A   GA AL G KY   VRVV++ 
Sbjct: 453 HFGQITSDELAEMERIVNEKIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI- 511

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G  S  LCGGTHV++T  I +  IVSES I AG+RRIEA+T + A   L  ++++L
Sbjct: 512 ----GGWSIELCGGTHVANTENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQL 567

Query: 743 KSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
           K +A+ +K  Q   VV + E++ ++ R+LQ
Sbjct: 568 KQVATIVKSPQLKEVVSKAEQLQQQVRELQ 597


>gi|327304957|ref|XP_003237170.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326460168|gb|EGD85621.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 934

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 317/968 (32%), Positives = 477/968 (49%), Gaps = 135/968 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFL++F+KNGH            DP     NS     K                 QK
Sbjct: 23  VRDTFLDYFEKNGHTF-------GTVDP-----NSDFAQLKRAHNS------------QK 58

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY
Sbjct: 59  CIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 118

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCSEI +D
Sbjct: 119 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 177

Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+ +
Sbjct: 178 R----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLI 286
           +LQ K++NYD D+F  L  A + +TG + Y G       + I   +RV+ DHLR+ +F I
Sbjct: 234 ILQNKSSNYDTDVFTPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344
            DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ + +
Sbjct: 294 TDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIRRKQ 353

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTHGLPLD 399
             + E L  E+  F KTLDRG    +        S  GK   L+G   ++LYDT G P+D
Sbjct: 354 TDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTFGFPVD 410

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-----EKYGA 454
           + + +   R L  ID   F    EE R +A+  S G     ++ +  ++      EK G 
Sbjct: 411 LTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTLEKNGV 465

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511
            +         +KF K                 + + +KAI    E+++   +  + +++
Sbjct: 466 PK-----TDDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIPANEQI 505

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S
Sbjct: 506 GIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNFSVNDS 564

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ +
Sbjct: 565 VIAEYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDS 624

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +L+ IE    D I QN  V ++ +    A   +G  A+ G  Y D VRVVSV  E   + 
Sbjct: 625 DLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEIL 684

Query: 690 -----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------- 731
                      S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A       
Sbjct: 685 KNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIA 744

Query: 732 --------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLI 773
                   R   M     +D ++KSL   L       V +     +  +I ++    Q  
Sbjct: 745 REFGERLNRFEKMPASPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKA 804

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGIS 831
             K +++  ++ +S +   +    S +I    +   K++ ++L   K   SG  + V  +
Sbjct: 805 AQKAEVKTAIDAISAYFEENTESPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAA 864

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K +    VT DL  +  +A + A   + ++GG  GG  P +A   G   NK D+A+ 
Sbjct: 865 DASKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKVDEALD 923

Query: 891 GVASFLKK 898
               +L+K
Sbjct: 924 EATKYLEK 931


>gi|321466736|gb|EFX77730.1| hypothetical protein DAPPUDRAFT_54067 [Daphnia pulex]
          Length = 992

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 271/797 (34%), Positives = 396/797 (49%), Gaps = 75/797 (9%)

Query: 2   SNVSSIRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           S+   IR  FL+FF K   H  +PSSS++P  DP+L F N+GM  FK IF GQ  P +Q 
Sbjct: 15  SSSKEIREKFLDFFAKEHLHSRVPSSSVVPYGDPSLAFVNAGMNQFKPIFLGQAAPQHQR 74

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R GGKHNDLD+VGR   HHTFFEMLG++SF  YFK+ A  +AW LLT+ + +
Sbjct: 75  AVNSQKCIRVGGKHNDLDDVGRDGYHHTFFEMLGSWSFNDYFKKEACSMAWQLLTQVYRI 134

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             ++L+IT +          DEE  ++W  + G++AD I+     DNFW M   GPCGPC
Sbjct: 135 PPQKLFITYFGGNQSLGLPSDEECREIWLSL-GVAADHILPFGMKDNFWEMGLVGPCGPC 193

Query: 173 SEIFFDQGECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEI  ++             +G E  +EIWNLVFMQ+ + + Q    LP   IDTGMGLE
Sbjct: 194 SEIHVNKANLETSLARTLVNQGTEEVVEIWNLVFMQYNRISNQVLEKLPAHHIDTGMGLE 253

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVN---------HRVIVDHLRS 281
           R+   LQ K +NYD DLF  LI A  Q++ G+ Y+G+  +          +R++ DH R 
Sbjct: 254 RLVAFLQNKNSNYDTDLFLPLIDAVHQISGGVPYQGSYDMQSAQGQRDWAYRLLADHSRM 313

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N  R   LRR+MR+AM  +R        L++ L   +   MG  YPEL
Sbjct: 314 ITVALADGAFPDNNHR---LRRVMRQAMVTSRKWFNQDASLLLELSQRVADMMGGVYPEL 370

Query: 341 IQAKLLIEETLRSEDERFGKTLDR----------------------------GLVLLDGV 372
            +    +   LR E++ F   L +                            GL  L+  
Sbjct: 371 SRNLSNVHMLLRFEEDIFRDHLAKSGREWSAIVNQFPELSALPTDQQPGLIAGLRQLEDW 430

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
               G D+I +G +AFKLY THGL  D +Q ++  +G   +D   F+Q + ++R   +  
Sbjct: 431 RRSSGSDKI-SGSLAFKLYSTHGLQEDSLQLLVQLKGW-NVDWPQFHQLMADERMSTKIQ 488

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S    +  + +   +   K   T +   D+   +       K      P D T     + 
Sbjct: 489 S---SAAVSSQFQCATSLKVAPTVWQCQDVCSRNAEGHYTFK------PFDAT-----VT 534

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
             + Q G  +EEA +G +V V+ D++ FY EAGGQ+ DTG  +      Q+ ++++  + 
Sbjct: 535 ALVSQDGRTIEEAATGDRVAVIADKSCFYYEAGGQVSDTGRLLWPTGAGQVEEIRRVGDH 594

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I+ H   V  G LR   ++ + +D  NR     NH+ATHLLH A+  IL     Q  S +
Sbjct: 595 IY-HLIKVNEGNLRVNQTVQMMLDEDNRLNTMANHTATHLLHAAIKDILKV-TCQKSSYV 652

Query: 613 TPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670
           TP+  RF+        T   +   E +V + I Q L V   ++    A++  G   + G 
Sbjct: 653 TPEHFRFEFGLFQSEFTLEMISQAESSVRNWICQRLAVDRLMLPLHQAVSLDGITLVPGE 712

Query: 671 KYNDRVRVVSVEYEDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            Y D V V+ V  E G   + +L  C GTHV +T ++    I+S  S   G R + A+T 
Sbjct: 713 SYPDMVSVIRVAQESGKDEAISLEPCCGTHVRNTADLEEFAILSVKSAGIGSRSVRAVTR 772

Query: 729 QRARSHLMGQDEKLKSL 745
             A+  L   D+  + L
Sbjct: 773 ATAKQSLCRADDLKREL 789


>gi|308803402|ref|XP_003079014.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS)
           [Ostreococcus tauri]
 gi|116057467|emb|CAL51894.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS)
           [Ostreococcus tauri]
          Length = 1170

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 265/780 (33%), Positives = 406/780 (52%), Gaps = 78/780 (10%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R TF+ +F +K  H   PSS  +P +DPTL+F N+GM  +K IF G+  P         
Sbjct: 249 VRDTFINYFIEKQNHTPWPSSPAVPVDDPTLLFANAGMNQYKPIFLGKADPKTALAKLSR 308

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLTK + L
Sbjct: 309 ATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTKVYCL 368

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY T +  DE        EA  +W K   L   +++     DNFW M + GPCGPC
Sbjct: 369 PEDRLYATYFGGDESQGLEPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPCGPC 426

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +EI +D+     GG   SS    +    +EIWN+VF+Q+               +DTGMG
Sbjct: 427 TEIHYDR----IGGRDASSLVNMDDPNCLEIWNVVFIQYTH-------------VDTGMG 469

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  + +  +++TG             G   + +RV+ DH+R
Sbjct: 470 FERLTSILQNKPSNYDTDVFMPIFKEIQRITGASPYTGLLGKSDVGEKDMAYRVVADHIR 529

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           +    IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+P +  ++G  +PE
Sbjct: 530 TLCIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFAQLVPIVVKQLGYVFPE 589

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           LI+ K  I E +  E+  FG+TL++G+     VL    K+   +++G  AF L++++G P
Sbjct: 590 LIEKKKHIVEIIAEEETSFGRTLEKGIAQFKKVLDAATKEGRTVISGPEAFLLWESYGFP 649

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+++ +    G   +D   F +A  E + ++RA   G  SG  + ++     +  AT +
Sbjct: 650 NDLVELMAEEVGFT-LDNEGFAKAFAEAQEKSRAG--GKKSGGVQLLF-----EAEATAW 701

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +  + +  +    +  K    +P     +  S++   +   G +   A +      V + 
Sbjct: 702 LQNNDVSTT---NDSEKYAVGRP-----SHTSTVAAILTPSGFVKSTADAEGPYGFVLNS 753

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE+GGQ+ DTG        + + DV K A G  +H   V  G +    +    +DY
Sbjct: 754 TTFYAESGGQVADTGAISTPNGSVSVEDV-KVAAGFVLHTGEVS-GTVSVGEAATCAVDY 811

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R  +  NH+ TH+L++AL  + G  V Q GS +  + LRFD + +K +T+ ++  IE 
Sbjct: 812 ERRENIMPNHTMTHVLNYALRKVAGDGVDQKGSLVDEEKLRFDFSLNKGLTTKQIADIEA 871

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YED 685
            VN+ I   L V  R +    A+  +G  A+ G  Y D VRVVSV             E 
Sbjct: 872 VVNEQINAKLSVDKREVALAKAMTINGLRAVFGEVYPDPVRVVSVGPSIDELLADPINEK 931

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
              +S   CGGTH+ +T       ++ E+ I  GIRRI A T   A+  +   +E + ++
Sbjct: 932 WVNYSIEFCGGTHLQTTDFAEQFVVLEETGISKGIRRITAATRGTAKKAIARANELMATV 991


>gi|51260239|gb|AAH79844.1| Aars2 protein [Mus musculus]
          Length = 975

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 289/903 (32%), Positives = 456/903 (50%), Gaps = 135/903 (14%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 30  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 89

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 90  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 149

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 150 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 208

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    + GG+ GS +     +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 209 GPCTEIHYD----LAGGV-GSPQ----LVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 259

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G            EG     +RV+ DH+R
Sbjct: 260 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 319

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +    P  +  L+P +   +GSAYPE
Sbjct: 320 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 379

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+   L    G+P
Sbjct: 380 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 439

Query: 398 LDIMQDILCARGL----AGIDIISFNQAL---------EEQRSRARAHSLG----LGSGT 440
           LD+++ +L  +G+    AG++ ++  +A          +E R     H+L      G  T
Sbjct: 440 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 499

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           T+        KY  T     D   G          LC+          + +++   + G 
Sbjct: 500 TDD-----SPKYNYTLHPNGDYEFG----------LCE----------ARVLQLYSETGT 534

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAI 559
            V    +GQ+  ++ D+T FYAE GGQ  D G  +  G +  +  V   +  G F+ H  
Sbjct: 535 AVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEA 594

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +    L+    + L +D   R    + H+ATHLL  AL   LG    Q GS + P+ LRF
Sbjct: 595 MAPERLQVGDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRF 654

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV     +T+ +L+++E  V +++ Q+ PV       E+   +  A + G +  D V   
Sbjct: 655 DVATQTLLTTEQLRTVESYVQEVVGQDKPVFM-----EEVPLAHTARIPGLRSLDEV--- 706

Query: 680 SVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRA 718
              Y D                      +H+S  LC GTH+ STG +  L I+ E  +  
Sbjct: 707 ---YPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVK 763

Query: 719 GIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           GI R+ AITG++A ++  +GQ    +  A+  ++SQG+            R L   H   
Sbjct: 764 GITRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGS------------RDLPEAH--- 808

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISKEKKA 836
           +L  ++  L+  ++A+    S +I +   +EL++ +  LQ++  + I  L  G + EK  
Sbjct: 809 RLSKDIGRLT--EVAE----SAVIPQWQRQELQTTLKMLQRRANTAIRKLEKGQATEKSQ 862

Query: 837 SVL 839
            +L
Sbjct: 863 ELL 865


>gi|52630311|ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus]
 gi|115502845|sp|Q14CH7|SYAM_MOUSE RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|109730201|gb|AAI13780.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
 gi|109730687|gb|AAI13173.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
          Length = 980

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 289/903 (32%), Positives = 456/903 (50%), Gaps = 135/903 (14%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 95  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    + GG+ GS +     +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYD----LAGGV-GSPQ----LVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G            EG     +RV+ DH+R
Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +    P  +  L+P +   +GSAYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+   L    G+P
Sbjct: 385 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 444

Query: 398 LDIMQDILCARGL----AGIDIISFNQAL---------EEQRSRARAHSLG----LGSGT 440
           LD+++ +L  +G+    AG++ ++  +A          +E R     H+L      G  T
Sbjct: 445 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 504

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           T+        KY  T     D   G          LC+          + +++   + G 
Sbjct: 505 TDD-----SPKYNYTLHPNGDYEFG----------LCE----------ARVLQLYSETGT 539

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAI 559
            V    +GQ+  ++ D+T FYAE GGQ  D G  +  G +  +  V   +  G F+ H  
Sbjct: 540 AVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEA 599

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +    L+    + L +D   R    + H+ATHLL  AL   LG    Q GS + P+ LRF
Sbjct: 600 MAPERLQVGDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRF 659

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV     +T+ +L+++E  V +++ Q+ PV       E+   +  A + G +  D V   
Sbjct: 660 DVATQTLLTTEQLRTVESYVQEVVGQDKPVFM-----EEVPLAHTARIPGLRSLDEV--- 711

Query: 680 SVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRA 718
              Y D                      +H+S  LC GTH+ STG +  L I+ E  +  
Sbjct: 712 ---YPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVK 768

Query: 719 GIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           GI R+ AITG++A ++  +GQ    +  A+  ++SQG+            R L   H   
Sbjct: 769 GITRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGS------------RDLPEAH--- 813

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISKEKKA 836
           +L  ++  L+  ++A+    S +I +   +EL++ +  LQ++  + I  L  G + EK  
Sbjct: 814 RLSKDIGRLT--EVAE----SAVIPQWQRQELQTTLKMLQRRANTAIRKLEKGQATEKSQ 867

Query: 837 SVL 839
            +L
Sbjct: 868 ELL 870


>gi|324504252|gb|ADY41836.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 835

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/768 (33%), Positives = 404/768 (52%), Gaps = 63/768 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQ 59
           S +R +FL+FF   GH  +PSSS++P +DP+L+F  +GM  FK+I  G       +   +
Sbjct: 22  SEVRQSFLKFFMDRGHVHVPSSSIVPSDDPSLLFVTAGMNQFKSIILGVCGADDWRSSLR 81

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK  A Q AW+ LT+   
Sbjct: 82  RVVNSQKCLRAGGKHNDLNDVGGDLSHHTFFEMLGNWSFGDYFKAEACQFAWEYLTEVLR 141

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L   RLY+T Y +D         E  ++W+ + GL   +I+R    +NFW MA+TGPCGP
Sbjct: 142 LPPDRLYVTYYGDDHELSLGDDIECREIWRNL-GLHPSRILRFGVEENFWVMADTGPCGP 200

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CSEI +D      GG   S   +      +EIWNLVFMQ+ +        LP   ID GM
Sbjct: 201 CSEIHYD----FIGGRDASHLVNTSDPSVVEIWNLVFMQYNRDASGRIVSLPCRHIDCGM 256

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279
           G ER A ++Q+  +NYD D+F  LI    + T +   G  I           +R I DHL
Sbjct: 257 GFERTAAIMQQVQSNYDSDIFSPLISEISKYTSLGGYGGRIGQADIYGRDTAYRTIADHL 316

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338
           R+    I+DG+ P   GRGYVLRR++RRA   + + L     L+  L+P   + +  ++P
Sbjct: 317 RALCVAISDGVRPDAAGRGYVLRRMLRRAARMSSVTLQADRGLLAALVPTYTSHLARSFP 376

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           E+     +IE+ +  E+ +F + +DRG  L  +     L K    +GD+A+ L++THG P
Sbjct: 377 EVANNAKVIEDIISLEESQFWRVVDRGERLFAEEAEKSLLKKIPFSGDIAWYLHNTHGFP 436

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           +++   +   R L+ ID+  F +   + +   R RA+     +  T ++      +    
Sbjct: 437 IELTSMLAEERNLS-IDLDRFEECRNQAKMLRRVRANDTCWRNVDTVRLCQDGMTRTCDM 495

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
               Y  +    ++  +R+              + I+    ++G  +E+  +  +  VV 
Sbjct: 496 GKYEYAKMDDGSYVFPERQ--------------AKILAIFSKEGIRLEQLATNMEGCVVV 541

Query: 516 DQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLV 572
           D+T FYAE GGQL D G  C+        + DVQKK + +F + H+  +   L  E +++
Sbjct: 542 DETIFYAEQGGQLADNGVLCSSNGEEVFVVDDVQKKDDFVFLIGHSTQD---LTVETNVI 598

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID   R QL   H+ THLL  AL  + G  V Q GS ++PD +RFD +    ++  ++
Sbjct: 599 QKIDLNRRLQLMRAHTGTHLLLDALRILFGPAVYQRGSLVSPDRIRFDCSLEHALSQGQI 658

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNR------EDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + +E  ++++I  + PV T I+        ++  ++  A+L  T  N  +RVV++     
Sbjct: 659 REVERVLSEVIESDQPVFTEIVPHTQLSAIQNIQSTITASLTETASNGLIRVVTINAPVN 718

Query: 687 GVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           G  + A+  C GTHV +T ++    +VS+ S+ +G+RR+ A+TG  AR
Sbjct: 719 GKSARAVECCCGTHVLNTRDLGAFVVVSDRSLGSGVRRLTALTGTAAR 766


>gi|148377682|ref|YP_001256558.1| alanyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|205830150|sp|A5IYK5|SYA_MYCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148291728|emb|CAL59114.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma
           agalactiae PG2]
          Length = 880

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 286/915 (31%), Positives = 464/915 (50%), Gaps = 106/915 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FF+   H ++ S SLIP ND +L++ NSG+   KN F+G++ P    +T  
Sbjct: 7   TEIRQKWLDFFESKNHLVIESKSLIPVNDSSLLWINSGVATLKNYFSGKKVPPAFRLTNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    ++D  +
Sbjct: 67  QKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVLEMDFEK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D+GE   
Sbjct: 123 LYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYDRGEKYD 180

Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+  
Sbjct: 181 RRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLASIMQDVP 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRSSSFLIADGI 290
            NYD DLF ++I+  E+ +  KY           +G    N ++I DH+R+    IADG 
Sbjct: 241 TNYDSDLFINIIREIEKYSPYKYVIENYFAKDEHQGEINTNFKIIADHIRTVVNAIADGA 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
             +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E    K +I+  
Sbjct: 301 KVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYNE----KDVID-A 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F KT+++G +LL+  L +  ++++ +G VAF L +T+G P+++  +IL  +G+
Sbjct: 356 IKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEILHQKGI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFM 469
           + +D+ +F  A E+    A A   G  +G  + I   +L +K     F+GY  L  +   
Sbjct: 414 S-VDMDAFELAKEKH---ALASKGGKATGMDKVINSLALIDK-KMDNFVGYSELSAN--- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              S ++K   ++ E+      G    V+ + TPFYA +GGQ  
Sbjct: 466 -------------------SKVLKLFDEENEVEGFETGGY---VLLETTPFYATSGGQRH 503

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I    +++I DV K   G  +H      G +     +   +D   R  L  NHS 
Sbjct: 504 DKGFIIQGENKIKIIDVFKDKFGNHIHFV---EGKMNNHEPVSSFVDPNIRIGLERNHSG 560

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K++ED V   I +++  
Sbjct: 561 THLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYITKSIDR 620

Query: 650 VTRIMNREDAIASGAAALL--GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                  + A   GA   L  G   + R +RVV       G  +S LCGGTH+S+T ++ 
Sbjct: 621 EYITTTVDKAREMGAIMTLEEGEYMDPRAIRVVRF-----GDITSDLCGGTHLSNTSKLE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-----DEKLKSLASFLKVSQGNVVG--- 758
              I +    +AG+ RI AI+  +  +  + +     +E+L ++   +K  + + V    
Sbjct: 676 SFKITNVEKKQAGVFRIRAISSSKLVNEYLSKVNKKLNEELATIIKKIKELKSDYVAPAI 735

Query: 759 ----------------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
                           R++E+ E Y+  QL+     L+ + E +   KI D +   +I  
Sbjct: 736 NENEPDIETLNASINKRIDELREVYK--QLLKESSNLEFDYETVKFDKIKDYDV--YINL 791

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +VD+  +K +  +++ K Q G  + +  SK +   +L + T        A+D  ++  K+
Sbjct: 792 DVDASAVKLIAASIRDKFQLGKTVAIIGSKNENELLLAIATR-------AIDANKMFKKL 844

Query: 863 LG--GGGGGGRPHMA 875
                G GGG P +A
Sbjct: 845 ASELNGRGGGAPILA 859


>gi|157818067|ref|NP_001100361.1| alanyl-tRNA synthetase, mitochondrial [Rattus norvegicus]
 gi|313471549|sp|D3ZX08|SYAM_RAT RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|149069292|gb|EDM18733.1| alanyl-tRNA synthetase like (predicted) [Rattus norvegicus]
          Length = 985

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 267/780 (34%), Positives = 412/780 (52%), Gaps = 79/780 (10%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFK+ A  +AW+LLT+ 
Sbjct: 95  RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    + GG+ G  +     +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYD----LAGGM-GPPQ----LVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q           G   EG     +RV+ DH+R
Sbjct: 265 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +    P  + +L+P +   +G+AYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 384

Query: 340 LIQ--AKLLIEE--TLRSEDE-RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYD 392
           L +   K+LI E   L SEDE  F  +L RG  ++D  +  LG  ++   +VA+   L  
Sbjct: 385 LQKNSVKVLIWEIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSG 444

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
             G+PLD++Q +L  +G+  +D     Q A +E + RA+        G    +  +L+E 
Sbjct: 445 NLGIPLDLVQLMLEEKGVK-LDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDV-HALEEL 502

Query: 452 YGATQFIGYDLLRGSKFMKEDRKV-LCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSG 508
           +           +G     +  K     +P  D   G+  + +++   + G  V     G
Sbjct: 503 H----------RQGIPTTDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEG 552

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRT 567
           Q+  ++ D+T FYAE GGQ  D G  I  G +  +  V + +  G F+ H  +    L+ 
Sbjct: 553 QRCGLLLDRTNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQV 612

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D   R    + H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+
Sbjct: 613 GDRVQLYVDKAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPL 672

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------- 676
           T+ +L+++E  V + + Q+ PV       E+   +  A + G +  D V           
Sbjct: 673 TTEQLRTVESYVQEAVGQDKPVYM-----EEVPLAHTARIPGLRSLDEVYPDPVRVVSVG 727

Query: 677 ----RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
               + ++   +     S  LC GTH+ STG +  L I+ +  +  GI R+ AITG++A+
Sbjct: 728 VPVAQALAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVKGITRLLAITGEQAQ 787


>gi|219558559|ref|ZP_03537635.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|289570724|ref|ZP_06450951.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|289544478|gb|EFD48126.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
          Length = 797

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 285/804 (35%), Positives = 431/804 (53%), Gaps = 52/804 (6%)

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++
Sbjct: 10  YGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYY 69

Query: 178 DQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           D+G E  P G P  SE+  RY+E+WNLVFMQ E      +++ Q    LP+ +IDTGMG+
Sbjct: 70  DRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGV 127

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIA 287
           ER+A VLQ+  N Y+ DL + +I    +V    Y+ GN  + V +R+I DH R+++ LI 
Sbjct: 128 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 187

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I
Sbjct: 188 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 247

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++ 
Sbjct: 248 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 307

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR 
Sbjct: 308 AETGLQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR- 365

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           S+       V  ++ P+ + +GV+               A  GQ+VE+V D+TP YAE+G
Sbjct: 366 SQARILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESG 411

Query: 526 GQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           GQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D   RR
Sbjct: 412 GQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRR 471

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+
Sbjct: 472 GATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNE 531

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  +  V T     + A A GA AL G  Y D VRVV    E GG  S  LCGGTHVS+
Sbjct: 532 AVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSN 587

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV 
Sbjct: 588 TAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVA 647

Query: 762 EIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDA 815
            + E  R  +    + ++               +I +V  ++  +S  + + +L+S++  
Sbjct: 648 NLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGD 707

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           ++ K+ S   ++  I++ +  +V   V      +DL  R N  DL +  A  +  G GGG
Sbjct: 708 IRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGG 764

Query: 871 RPHMAQSGGPNGNKADQAIAGVAS 894
           +  +AQ  G N    D A+  V S
Sbjct: 765 KADLAQGSGKNPTGIDAALDAVRS 788


>gi|213420683|ref|ZP_03353749.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 340

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/337 (57%), Positives = 245/337 (72%), Gaps = 12/337 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER
Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NYDIDLF+ LI+A  +VTG    GN  +  RVI DH+RS +FL+ADG+LP
Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
           +NE RGYVLRRI+RRA+ +  +LG  E     L+  L
Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPL 338


>gi|90019286|gb|ABD84294.1| alanyl-tRNA synthetase-like [Yersinia sp. MH-1]
          Length = 366

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/365 (54%), Positives = 260/365 (71%), Gaps = 11/365 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT E  F+L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFNL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSE 174
            + +L++TVY+ D+EA+ +W    G+  ++IIRI        +DNFW M +TGPCGPCSE
Sbjct: 124 PKEKLWVTVYETDDEAYNIWANDVGVPRERIIRIGDKGAPFASDNFWQMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER+
Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERI 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ    NY+IDLF+ LI A  +VTG      N  + RVI DH+RS +FLI+DG++P+
Sbjct: 244 AAVLQHVNTNYEIDLFRDLIAAVAEVTGAT--DLNSKSLRVIADHIRSCAFLISDGVIPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q + ++E+ L++
Sbjct: 302 NENRGYVLRRIIRRAIRHGNILGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVLKT 361

Query: 354 EDERF 358
           E+E+F
Sbjct: 362 EEEQF 366


>gi|156101531|ref|XP_001616459.1| alanyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148805333|gb|EDL46732.1| alanyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 1197

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 277/871 (31%), Positives = 440/871 (50%), Gaps = 116/871 (13%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
            +R  F+ +F++  H ++ S+S+IP ND TL+FTN+GM  FK IF GQ         + +A
Sbjct: 213  VRGGFINYFKEKNHTVVESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKSSDLGKLKRA 272

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            V T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT  + +
Sbjct: 273  VDT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNVYKI 331

Query: 121  DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            D  RLY+T +  DE         E  K+W K   +   +I+     +NFW MA+TGPCGP
Sbjct: 332  DPNRLYVTYFGGDEKLASCPEDLETKKIWLKY--VDESRILPFGMKENFWEMADTGPCGP 389

Query: 172  CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CSEI +D+     G    SS   ++    +EIWN+VFMQ+ +  K+    LP   IDTGM
Sbjct: 390  CSEIHYDR----IGNRDASSLVNKDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGM 445

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVIVDH 278
            GLER+ ++LQ   +NYD DLF  + +  +++     E    VN          +RV+ DH
Sbjct: 446  GLERITSILQNVESNYDTDLFMPIFKQIKEIFNYLPEYGGKVNEEDVDRIDYAYRVVSDH 505

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLMMHLLPALCTEMGS 335
            +R  +  I+DG LP NEGR YV+RRI+RRA+   + +   G        L+ ++C  +  
Sbjct: 506  IRCVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVGSNVLWFYKLVDSVCHILNK 565

Query: 336  AYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKL 390
             + +L     +  I+  ++ E+  F +TL++G+   + ++      G D + +G  AF L
Sbjct: 566  CFTDLKDEDRVNYIKSVIKQEEMVFNRTLEKGVDQFNKIIKRGNTSGGDNLFSGKDAFDL 625

Query: 391  YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG---TTEKIWFS 447
            Y ++G P+D++Q I+C      +++  FN+   + +  +  ++  +        EK    
Sbjct: 626  YTSYGFPIDLVQ-IMCEEKNFKLNMTEFNELFRKHQLVSDTNNFKINKFFDLPVEKA-HE 683

Query: 448  LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVE 503
            LKEK+G    + +      ++   D K +  K    +  GV      ++  GE     +E
Sbjct: 684  LKEKHGVAATVDH---YKYEWNNADGKNVMAK----VDTGV-----VVIYDGENFLDSIE 731

Query: 504  EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
             A   +K  ++  +T FY E GGQ+ DTG    + ++ ++ +VQK  E + +H  +++ G
Sbjct: 732  TASEDKKYALILRETNFYYENGGQIYDTGVIQNEQMKFEVVNVQKMNEYV-LHIGVLQEG 790

Query: 564  ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV------------------ 605
             ++    +   +++  R+ ++ NH+ATHLL+  +  +L  +V                  
Sbjct: 791  KIQKNDCVHTVVNFDRRKLVACNHTATHLLNFVIKKVLTEYVMHSKGGAQNGDLAHTPNE 850

Query: 606  ------------SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
                         Q GS +  + LRFD +  + ++   +  IE  VND+I Q L V  R 
Sbjct: 851  KEQTGGNSIFNCDQKGSLVDDEKLRFDFSFFQNVSDELVSKIESQVNDLIRQELSVSVRT 910

Query: 654  MN-REDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSS 701
            M+ +E     G  A+    Y D V VV ++ +   +            S  LCGGTH+++
Sbjct: 911  MDLKESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYLCSIELCGGTHIAN 970

Query: 702  TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL------KVSQGN 755
            T  I    I SE SI  GI RI A+T ++A       D+ L             K++   
Sbjct: 971  TKFIKKFVITSEESIGKGIYRINAVTNKKAEEVEAKFDDLLAKYKHIFDDPNEGKLADVQ 1030

Query: 756  VVGRV--EEIWEEY-RKLQLIHAKRKLQLNV 783
               RV  E+ +  Y RK Q++H   K++ N+
Sbjct: 1031 TYKRVLKEDKFLPYIRKNQILHNLEKIEKNI 1061


>gi|124514064|ref|XP_001350388.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23615805|emb|CAD52797.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1408

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 264/843 (31%), Positives = 421/843 (49%), Gaps = 144/843 (17%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60
            +R  F+ +F K  H ++ SSS++P ND TL+FTN+GM  FK IF G          + +A
Sbjct: 394  VRNNFINYFHKKNHTIIESSSVVPYNDNTLLFTNAGMNQFKKIFLGNADKNSDLGKLKRA 453

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            V T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT  + +
Sbjct: 454  VDT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESISFAWDLLTNVYKI 512

Query: 121  DQRRLYITVY--DE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            +  RLY+T +  DE       D E  K+W K   +S D+I+     +NFW MAETGPCGP
Sbjct: 513  NPDRLYVTYFGGDENLSTCPADHETKKIWMKY--ISEDRILPFGLKENFWEMAETGPCGP 570

Query: 172  CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CSEI +D+     G    SS   ++    +EIWN+VFMQ+ +   +    LP   IDTGM
Sbjct: 571  CSEIHYDR----IGNRDASSLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPFPCIDTGM 626

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVN----------HRVIV 276
            GLER+ ++LQ   +NYD DLF+ + +  +++      YEG   +N          +RVI 
Sbjct: 627  GLERITSILQNVDSNYDTDLFQPIFKQIKELFPYLPNYEGK--INEQDVDKIDTAYRVIS 684

Query: 277  DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEM 333
            DH+R  +  I+DG LP+NEGR YV+RRI+RRA+ + + +   +  ++    L+ ++C  +
Sbjct: 685  DHIRCVTVAISDGCLPSNEGRNYVIRRIIRRAIRFGKQVFNIKSNVLWFYKLVDSVCFIL 744

Query: 334  GSAYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391
            G+ + +L     +  I+ T++ E+  F KTL++G+     ++    K+ I +G  AF LY
Sbjct: 745  GNTFKDLQNPDKINFIKNTIKQEEMVFNKTLEKGVEQFHKIIKKNTKNNIFSGKDAFDLY 804

Query: 392  DTHGLPLDIMQDILCARGLAGIDIISFNQ----------------------ALEEQRSRA 429
             + G P+D++Q I+C      +D+  FN                        +E+     
Sbjct: 805  TSFGFPIDLIQ-IMCEEKSFNLDLQEFNDLFKKHQLVSDTNNFKINKFFDIPVEKSHELK 863

Query: 430  RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-----LLRGSKFMKEDRKVLCQKPPIDL 484
              H++       +  W +     G  + I ++     +  G+ F+             D 
Sbjct: 864  NVHNINPTVDHFKYEWNNNCANDGDNKDIKFETYVQVIYDGNNFL-------------DN 910

Query: 485  TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                S+  + ++++ + +EE  + +K  ++  +T FY E GGQ+ DTG    D ++ Q+ 
Sbjct: 911  FTLPSNNDEQVLEKEKSIEE--NKKKYALILKETNFYYENGGQIYDTGIIQNDNMKFQVL 968

Query: 545  DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            +VQK  E + +H  +  +G +     +   +D+  R+ ++ NH+ATH+L+  L  +L   
Sbjct: 969  NVQKINEYV-LHIGVFLKGYVSKNDKVQTIVDFDRRKLVACNHTATHMLNFMLRKVLTEK 1027

Query: 605  VS--------------------------------------------QNGSCITPDGLRFD 620
             +                                            Q GS +  + LRFD
Sbjct: 1028 YTNSGKSSKTHEGNNEKHEMSENDINSNNNYDNNKEEKGFSIFTCEQKGSLVDDEKLRFD 1087

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
             +  + I    +  IE+ +N +I + L V  + M+ +++    G  A+    Y D+V VV
Sbjct: 1088 FSFIENINIDAITKIENEINKLIKEELNVTVKTMDLDESKKIKGIRAIFEEDYADKVNVV 1147

Query: 680  SVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +  +   +           HS  LCGGTH+ +T  I    + SE SI  GI RI A+T 
Sbjct: 1148 FINKDVNNILNNMNIDYTYLHSIELCGGTHIGNTKLIRKFLVTSEESIGKGIYRITAVTN 1207

Query: 729  QRA 731
            ++A
Sbjct: 1208 KKA 1210


>gi|170594914|ref|XP_001902174.1| alanyl-tRNA synthetase family protein [Brugia malayi]
 gi|158590293|gb|EDP28977.1| alanyl-tRNA synthetase family protein [Brugia malayi]
          Length = 863

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 261/766 (34%), Positives = 399/766 (52%), Gaps = 74/766 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-----PVYQAV 61
           IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  FK +F G +         + V
Sbjct: 60  IRLSFLEYFKEHNHTYVPSSSVIPEDDSSVTFVNAGMNQFKPLFLGAKYTEGKLAALRNV 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R GGKHND D+VGR   HHTFFEMLGN+SFGGY K  A   AW+ LT    + 
Sbjct: 120 VNWQKCIRIGGKHNDFDDVGRDLTHHTFFEMLGNYSFGGYSKMEACLYAWNFLTDVLKIP 179

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLYIT +         ED E   +W K+ G+  D+++   +N NFW MA+TGPCGPCS
Sbjct: 180 ADRLYITYFGGDESMKLKEDRECRDIWIKL-GVPEDRVLGFCSNHNFWEMAQTGPCGPCS 238

Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EI +D  G      L  SS      +EIWNLVFMQF +    +   LP + ID GMG ER
Sbjct: 239 EIHYDLIGNRKAQKLVNSS--NPTVVEIWNLVFMQFSRDISGKISSLPTLYIDCGMGFER 296

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----VNHRVIVDHLRSSSFLIAD 288
           + +++Q   + YD DLF  L++   + + ++  G  +      +R++ DHLR++  +I+D
Sbjct: 297 LVSIVQGLHSAYDTDLFLPLMRIIHEYSKVRGYGGQLGDIDTAYRIVADHLRAACIMISD 356

Query: 289 GILPANEGRGYVLRRIMRR-AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G+ P++  RGY LRR++RR A+ +   LG    ++  L+P     +   Y  +   + +I
Sbjct: 357 GVEPSSRNRGYHLRRVLRRAALNFTLTLGAERGMLASLVPDFVNHITLLYNNVAACETVI 416

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +T+ SE++ F ++ D+G  LL+  ++   +  +L+G++A+ L  T+GLPL I Q I   
Sbjct: 417 AKTVMSEEQLFWRSYDKGCKLLEHNIA--SQQHVLSGEIAWMLSGTYGLPLSITQKICRE 474

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +GL  +D+  F Q L   +   +A          E++W    +K    + I    L G +
Sbjct: 475 KGLK-VDVDGFQQCLANFQKAQKAE---------EELW----QKIDLEEMI----LNGVE 516

Query: 468 FMKEDRKVLCQKPPI---DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
              +  K  C++  +   +  +   ++V      G+ V     G+   VV D T F+AE 
Sbjct: 517 PTNDSEKYCCERIELGKYEFPSRTGTVVAIFDVNGKNVMSLNPGELGSVVMDSTIFFAEQ 576

Query: 525 GGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRR 581
           GGQL D G  + D +   + I +  K+  G  +H   + + GIL   ++L   ID + R 
Sbjct: 577 GGQLYDRG-ILQDNLNNTIFIVNSVKRRNGYIIHTGKVADNGILEKGVNLTQIIDPKQRF 635

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVN 640
            L   H+ATH+LH AL  + G  V Q GS I PD L FD     + I   +++ +   VN
Sbjct: 636 FLMCGHTATHILHFALEKVFGVSVRQMGSFIGPDKLHFDFFIPDQKIALEKIEKVMAMVN 695

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGG------VHSSAL 693
           +II  N+ V  + + +E+         LG+ + D     +S E    G      V SSAL
Sbjct: 696 NIIESNINVTVKYILQEE---------LGSLHKDFSAFDISQEASSNGSYRIITVESSAL 746

Query: 694 --------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                   C GTHV +T +I    I+ + S  A +RRI A+T   A
Sbjct: 747 LGQDIIEPCCGTHVLNTSDIGRFVIIGQKSRGANVRRIYAVTNSAA 792


>gi|171687707|ref|XP_001908794.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943815|emb|CAP69467.1| unnamed protein product [Podospora anserina S mat+]
          Length = 911

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 310/949 (32%), Positives = 459/949 (48%), Gaps = 138/949 (14%)

Query: 43  MVPFKNIF---TGQEKPV--YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F    G+ +P+   +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+S
Sbjct: 1   MAQFKPLFLGTVGKTEPMAALKRAADTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+ AI   W+LLTK + LD  RLY+T ++ +E        EA +LW    G+  D
Sbjct: 61  FGDYFKKEAIGWTWELLTKVYGLDPNRLYVTYFEGNEAMGLEPDLEAKQLWLD-QGVPED 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFM 206
            I+     DNFW M + GPCGPCSE+ +D+     GG   +   +++    +EIWN VFM
Sbjct: 120 HILPGNMKDNFWEMGDQGPCGPCSEVHYDK----VGGRNAAHLVNQDDPLVVEIWNNVFM 175

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---- 262
           Q+++Q  +    LP   IDTG+G ER+ + LQ K++NYD D+F  L     +V+G     
Sbjct: 176 QYDRQKDRSLKPLPAKHIDTGLGFERLVSALQHKSSNYDTDVFAPLFAKIVEVSGSRPYS 235

Query: 263 -KYEGNNI----VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR--LL 315
            KY  +++       RV+ DH+R  SF IADG +P N GRGYV+RR++RR + YAR  L 
Sbjct: 236 DKYGKDDVDGVDTALRVVADHIRLLSFSIADGAVPGNIGRGYVVRRVLRRGVRYARKYLN 295

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
                    +LPAL  +MG  +PEL + +  I+E L  E+  F  TLDRG  + +   + 
Sbjct: 296 ANIGSFFSQILPALVEQMGEQFPELKKKEADIKEILDEEEVAFAVTLDRGEAMFEKYAAA 355

Query: 376 LGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
             K  ++ L+G   ++LYDT G P+D+ + +   RGL  ID      A E+ R  ++A  
Sbjct: 356 ATKAGEKKLSGADVWRLYDTFGFPVDLTKLMAEERGLT-IDEEEVKVAQEKAREASKAVK 414

Query: 434 LGLGS-------------------GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             + +                    T  +  +S +   G  Q I      GS+F++  + 
Sbjct: 415 EAVTTFPKLTVHHISELENDRNIPRTDSEAKYSAQSSEGKIQLI----FNGSEFIENSKD 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-C 533
           V  + P                              + ++ D+T FYAE+GGQ+ DTG  
Sbjct: 471 VPPKTP------------------------------LGIILDKTNFYAESGGQVADTGRI 500

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            I D    ++ D Q+   G  VH   +E G L+    +    D   R+ +  NH+ TH+L
Sbjct: 501 IIDDEAEFKVLDTQEFG-GYVVHSGFLEYGNLKAGDVVKCEFDELRRQPIRNNHTGTHVL 559

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           +HAL  +LG  V+Q GS +  D LRFD +H   +T  E+K IE+  N  I +NL V  + 
Sbjct: 560 NHALREVLGDTVNQAGSLVDQDKLRFDFSHKTQVTLPEIKRIEELSNADIRKNLKVYAKD 619

Query: 654 MNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSS 701
           +   +A   +G  A+ G  Y D VRVVSV           +  +    S   CGGTHV +
Sbjct: 620 VALSEAREINGLRAVFGETYPDPVRVVSVGASVEEMLKDPKNPEWRQFSVEFCGGTHVDA 679

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-----LKSLA---------S 747
           TG I  L IV ES I  GIRRI A TG  A +H   QD K     L  +A         S
Sbjct: 680 TGLIKDLIIVEESGIAKGIRRIVAYTG--AGAHQAQQDAKDFSDRLDHIAALEFGPEKVS 737

Query: 748 FLKVSQGNVVGRV-----------------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +K +  ++   V                 + + +E +K Q   +   L    +  +  K
Sbjct: 738 LVKAASVDLDALVISVLTKEELRKKFATIQKSVLDEQKKRQKAESGTALSTVQKFFADEK 797

Query: 791 IADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
             D   F+ H+    ++K +  VM   + K ++  + L   SK++     + V  D L  
Sbjct: 798 NKDAKAFVGHLPISANAKAISEVMTYYKSKDKAKSVYLFAGSKDEAVVHGVYVGTD-LKG 856

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             A        +++GG  GG  P   Q  G N  K D+A+     +L++
Sbjct: 857 VTAEQWTAAVTEIIGGKTGGKEPSR-QGAGSNPEKLDEAVTKAQQWLEE 904


>gi|194039401|ref|XP_001929628.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Sus
           scrofa]
          Length = 985

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 282/921 (30%), Positives = 456/921 (49%), Gaps = 149/921 (16%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
           +  +++R  FL FF+ ++GH L+PS+S+ P  DPTL+F N+GM  FK IF G   P    
Sbjct: 37  TQAAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPTLLFVNAGMNQFKPIFLGTVDPRSEM 96

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114
             ++ V   QKCVRAGG+HNDL++VG+   HHTFFEMLGN++FGG YFKE A  +AW+LL
Sbjct: 97  AGFRRVANSQKCVRAGGRHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 156

Query: 115 TKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+ + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +T
Sbjct: 157 TQVYGIPEDRLWVSYFGGDPKAGLGADLESRDIWLNL-GVPASRVLSFGPQENFWEMGDT 215

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPC+EI +D    + GG+        + +E+WNLVFMQ  ++       LP+  +DT
Sbjct: 216 GPCGPCTEIHYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDT 266

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVD 277
           GMGLER+  VLQ K + YD DLF  L+ A  Q  G            EG+    +RV+ D
Sbjct: 267 GMGLERLVAVLQGKHSTYDTDLFSPLLNAIHQGCGAPPYSGRVGAADEGHIDTAYRVVAD 326

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336
           H+R+ S  IADG+ P   G   ++RRI+RRA+ ++  +    P  +  L+P +   +G A
Sbjct: 327 HIRTLSICIADGVSPGMSGAPLIVRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGGA 386

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTH 394
           YPEL +    I   +  ++  F  +L RG  +++  L  LG  ++   +VA+   L    
Sbjct: 387 YPELHKNSAQIVSLVSEDEAAFLASLQRGRRIIERTLKRLGPSDVFPAEVAWSLSLSGNL 446

Query: 395 GLPLDIMQDILCARGL----AGIDIISFNQA---------LEEQRSRARAHSLG----LG 437
           GLPLD+++ +L  +G+    AG+  ++  +A         ++EQ  R   H+LG     G
Sbjct: 447 GLPLDLVELMLEEKGVQLDSAGLARLAQEEAQHRAQQAEPVQEQGLRLDVHALGELQRRG 506

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
              T+    S K  Y      GY+               C+          + +++   +
Sbjct: 507 VPPTDD---SPKYSYSLRPSGGYEF------------STCE----------ARVLQLYAE 541

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-----QKKAEG 552
            G  V     GQ+  ++ D+T FYAE GGQ  D G      +R++  DV     Q +  G
Sbjct: 542 DGRAVATTGEGQRYGLLLDRTNFYAEQGGQASDRGYL----VRVEQQDVLFPVAQAQVCG 597

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
            F+ H +V    L+    + L +D   R      H+A HLL+ AL   LG    Q GS +
Sbjct: 598 GFILHEVVAPECLKVGDRVQLHVDEAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHL 657

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           +P+ LRFDV    P+T  +L+++ED V + +            R++A+     AL  T +
Sbjct: 658 SPERLRFDVATQAPLTPKQLQAVEDTVQEAV-----------GRDEAVYMEEVALARTTH 706

Query: 673 NDRVRVVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIV 711
              +R +   Y D                      + +S  LC GTH+  TG I  L IV
Sbjct: 707 VPGLRSLDEVYPDPVRVVSVGVPVAHALEPASQAALQTSVELCCGTHLLRTGAIGDLVIV 766

Query: 712 SESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            E  +  G  R+ AITG++AR +  +GQ    +  A+  ++S+G+               
Sbjct: 767 GERQLAKGTTRLLAITGEQARQAREVGQSLAQEVEAAAERLSRGS--------------R 812

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            ++ A+R      +D+   ++ D    S ++ +   +EL++ + ALQ++  + I      
Sbjct: 813 DVVEAQRL----SKDMG--RLTDAVDTS-VMPQWQRRELQATLKALQRRANTAI------ 859

Query: 831 SKEKKASVLIVVTEDLLDRFN 851
            ++ +    ++ T++LL R +
Sbjct: 860 -RKLEMGQAVLKTQELLQRHS 879


>gi|326391983|ref|ZP_08213484.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991968|gb|EGD50459.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 494

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/520 (42%), Positives = 323/520 (62%), Gaps = 39/520 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +T+D+GL +L   +S L   GK  +L G  AFKLYDT+G PLD+ ++IL   G+  +D  
Sbjct: 361 ETIDQGLTILQDYISELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE+QR RAR+      S   + I+ +L +    T+F+GYD        + D KVL
Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDT------YESDSKVL 470

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                            AIV+  E+VEEA +G  V ++ D
Sbjct: 471 -----------------AIVKDEELVEEAEAGDDVSIILD 493


>gi|153810792|ref|ZP_01963460.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174]
 gi|149833188|gb|EDM88270.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174]
          Length = 683

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 271/716 (37%), Positives = 396/716 (55%), Gaps = 51/716 (7%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +E+WN VF QFE         L + +IDTGMGLER+A V+Q+  + +D+D    L     
Sbjct: 1   MEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVDSIFDVDTICALRNLVC 60

Query: 258 QVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
           ++ G +Y  N  + V+ R+I DH+RS++F+I+DGI+P NEGRGYVLRR++RRA  + RLL
Sbjct: 61  EIAGKEYGKNYQDDVSIRLITDHIRSATFMISDGIMPTNEGRGYVLRRLIRRAARHGRLL 120

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G     +  L   +     + YPEL + K  I + L +E+ +F KT+D+GL +L  +   
Sbjct: 121 GIEGSFLAKLSAEVINGSKAGYPELEEKKEFIFKVLTNEENQFNKTIDQGLRILGDMEEE 180

Query: 376 L--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-- 431
           +    ++ L+G+ AFKLYDT+G PLD+ ++IL  +G  GID   F +A+EEQR +AR   
Sbjct: 181 IKAAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEGFQKAMEEQRVKARTAR 239

Query: 432 ---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
              + +G  +   ++I  ++      T+F GYD L                         
Sbjct: 240 EVTNYMGADATVYDEIDVNV-----TTKFEGYDHLT-----------------------Y 271

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
            S +  +  + EIV   V GQK  V   +TPFYA  GGQ GD G       +  + D  K
Sbjct: 272 DSEITVLTTEKEIVTSLVEGQKGTVFVKETPFYATMGGQEGDCGVIETANGKFVVEDTIK 331

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
              G F H   +E G+L T  ++ L ++ Q RR    NHSATHLL  AL T+LGSHV Q 
Sbjct: 332 LRGGKFGHVGRMESGMLSTGETVTLKVNEQARRDTEKNHSATHLLQKALKTVLGSHVEQK 391

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           GS +TPD LRFD  H + +T  E+   E  VN  I   LPVVT +M+ E+A  SGA AL 
Sbjct: 392 GSLVTPDRLRFDFAHFQAMTPEEIAQTETLVNKEIQAALPVVTDVMDIEEAKKSGAMALF 451

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G KY+ +VRVVS+     G  S  LCGGTHV +T  IML  IVSE+ I AG+RRIEA+TG
Sbjct: 452 GEKYDQKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVSEAGIAAGVRRIEALTG 506

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS- 787
                +   Q+  L+ +A  LK     +  ++  +  E + LQ  +   K +L    L  
Sbjct: 507 NGVIEYYKKQETMLQEVAKALKAQPAEITEKITHLQAEVKSLQSENESLKSKLAQGSLGD 566

Query: 788 -CHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             ++I D   V  ++  +  VD   L+ + D L++KI  G+++L  ++   K ++L + T
Sbjct: 567 VMNQIVDVKGVKLLAAKVEGVDMNGLRDLGDQLKEKIGEGVVVLAAVNG-GKVNLLAMAT 625

Query: 844 EDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +       +A +L +  A ++ GGGGGGRP+MAQ+GG N  KAD+A+   A  L++
Sbjct: 626 DAAQKAGAHAGNLIKGVAAIV-GGGGGGRPNMAQAGGKNPEKADEAVKAAAGILEQ 680


>gi|114607605|ref|XP_518510.2| PREDICTED: alanyl-tRNA synthetase like [Pan troglodytes]
          Length = 985

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 291/942 (30%), Positives = 456/942 (48%), Gaps = 110/942 (11%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D +A          +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    + GG+        + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345
           +DGI P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G AYPEL +   
Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +L  +G+    AG++ +    A EE + RAR        G    +W  +    G  Q  G
Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 506

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                 S      +     +P      G   + +++   + G  V     GQ+  ++ D+
Sbjct: 507 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 561

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D
Sbjct: 562 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 621

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R      H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E
Sbjct: 622 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 681

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681
           + V + + Q+  V       E+   +  A + G +  D V                 +  
Sbjct: 682 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 736

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDE 740
             +     S  LC GTH+  TG +  L I+ +  +  G  R+ AITG++A ++  +GQ  
Sbjct: 737 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSL 796

Query: 741 KLKSLASFLKVSQGNV-----------VGRVEE-----IWEEYRKLQLIH---------- 774
             +  A+  ++SQG+            +GR+ E     +  ++++ +L+           
Sbjct: 797 AQEVKAATERLSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 856

Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829
            A RKLQ+        ++ + +    +I +  S E    L  V+  L ++  S  ++L+ 
Sbjct: 857 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 916

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
                K      V +  +  F A   A      +GG   G R
Sbjct: 917 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958


>gi|54020387|ref|YP_115693.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|81603668|sp|Q601M2|SYA_MYCH2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53987560|gb|AAV27761.1| alanyl tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 883

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/774 (32%), Positives = 408/774 (52%), Gaps = 68/774 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +   
Sbjct: 7   NEIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD + 
Sbjct: 67  QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G    
Sbjct: 123 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSKKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 180

Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+  
Sbjct: 181 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYAPLKSKNIDTGAGFERIVSILQDGP 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290
            NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I DG+
Sbjct: 241 TNYDTDLFLPIIAEIEKNTVFRYKIENYFLKKPRQTQINKSFRIIADHIRAITLAINDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +     +K+++   
Sbjct: 301 QPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRFDIPTISKIIL--- 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
             +E+E F KTL+ G  LL+  L  + K++I    V FKL++T+G P+++ ++IL  + +
Sbjct: 358 --NEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469
                   +Q +E Q   ++       +G  +K+  SL + K   + FIGY         
Sbjct: 414 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T+ + + +  +  + E V E        V+F++TPFYA AGGQ  
Sbjct: 461 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 505

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS 
Sbjct: 506 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 562

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q +  
Sbjct: 563 THLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 622

Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              + N E+A    A   L  ++Y D   +  V ++     ++ LCGGTH+ +T  +   
Sbjct: 623 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 679

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            I+S  S  +GI RI A+T   +    L G+ +++ S  S LK    N + ++E
Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 729


>gi|71893553|ref|YP_278999.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 880

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/774 (32%), Positives = 408/774 (52%), Gaps = 68/774 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +   
Sbjct: 4   NKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD + 
Sbjct: 64  QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G    
Sbjct: 120 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 177

Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+  
Sbjct: 178 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 237

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290
            NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I DG+
Sbjct: 238 TNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +     +K+++   
Sbjct: 298 QPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTLDYRFDIPTISKIIL--- 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
             +E+E F KTL+ G  LL+  L  + K++I    V FKL++T+G P+++ ++IL  + +
Sbjct: 355 --NEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 410

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469
                   +Q +E Q   ++       +G  +K+  SL + K   + FIGY         
Sbjct: 411 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 457

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T+ + + +  +  + E V E        V+F++TPFYA AGGQ  
Sbjct: 458 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 502

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS 
Sbjct: 503 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 559

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q +  
Sbjct: 560 THLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 619

Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              + N E+A    A   L  ++Y D   +  V ++     ++ LCGGTH+ +T  +   
Sbjct: 620 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 676

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            I+S  S  +GI RI A+T   +    L G+ +++ S  S LK    N + ++E
Sbjct: 677 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 726


>gi|153217607|ref|ZP_01951288.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113445|gb|EAY32265.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 593

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 247/628 (39%), Positives = 355/628 (56%), Gaps = 56/628 (8%)

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG        L+  L   
Sbjct: 14  RVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEV 73

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYD
Sbjct: 74  MGTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYD 132

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P D+  D+   RG + ID   F QA+EEQR RAR       +G     + SL +  
Sbjct: 133 TYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSA 185

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
             T+F GY   RG                        S+V+ +  +G  V    +G K  
Sbjct: 186 TNTEFCGYTASRGQ-----------------------SVVREMFVEGAEVSTLSAGDKAI 222

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D TPFYAE+GGQ GDTG    D     + D QK    I  HH ++ +G+L     + 
Sbjct: 223 IVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLAIGDQVD 281

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D + R  +S+NHSATHLLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+
Sbjct: 282 AIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEI 341

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           K +E  VN  I  N  + T IMN ++A A GA AL G KY+D+VRV+S+     G  S+ 
Sbjct: 342 KEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTE 396

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASF 748
           LCGG H S+TG+I L  I+SE  I AGIRRIEA+TG+ A  +L  Q    D K+  +A+ 
Sbjct: 397 LCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDVQQAQHDAKVSEMAAK 456

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
            K+ +       +EI +   KL    AK    L  +     +IA VN +   ++  D+K 
Sbjct: 457 AKLLE-------KEIQQLKDKLA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKA 503

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+ ++D L+ ++ SGIIML  ++ E K  ++  VT DL ++  A +L  + A  + GG G
Sbjct: 504 LRGMVDDLKNQLSSGIIMLGNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKG 561

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGRP MAQ+GG + +    A+  V +++
Sbjct: 562 GGRPDMAQAGGTDAHALPSALESVDAWI 589


>gi|148887013|sp|Q4AAD3|SYA_MYCHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|144227505|gb|AAZ44288.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 883

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 255/774 (32%), Positives = 408/774 (52%), Gaps = 68/774 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +   
Sbjct: 7   NKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD + 
Sbjct: 67  QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G    
Sbjct: 123 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 180

Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+  
Sbjct: 181 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290
            NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I DG+
Sbjct: 241 TNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +     +K+++   
Sbjct: 301 QPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTLDYRFDIPTISKIIL--- 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
             +E+E F KTL+ G  LL+  L  + K++I    V FKL++T+G P+++ ++IL  + +
Sbjct: 358 --NEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469
                   +Q +E Q   ++       +G  +K+  SL + K   + FIGY         
Sbjct: 414 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T+ + + +  +  + E V E        V+F++TPFYA AGGQ  
Sbjct: 461 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 505

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS 
Sbjct: 506 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 562

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q +  
Sbjct: 563 THLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 622

Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              + N E+A    A   L  ++Y D   +  V ++     ++ LCGGTH+ +T  +   
Sbjct: 623 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 679

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            I+S  S  +GI RI A+T   +    L G+ +++ S  S LK    N + ++E
Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 729


>gi|72080540|ref|YP_287598.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 880

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/774 (33%), Positives = 408/774 (52%), Gaps = 68/774 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +   
Sbjct: 4   NKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD + 
Sbjct: 64  QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G    
Sbjct: 120 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 177

Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+  
Sbjct: 178 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 237

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290
            NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I DG+
Sbjct: 238 TNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +   IQ    I + 
Sbjct: 298 QPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRFD--IQT---ISKI 352

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + +E+E F KTL+ G  LL+  L  + K++I    V FKL++T+G P+++ ++IL  + +
Sbjct: 353 ILNEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 410

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469
                   +Q +E Q   ++       +G  +K+  SL + K   + FIGY         
Sbjct: 411 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 457

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T+ + + +  +  + E V E        V+F++TPFYA AGGQ  
Sbjct: 458 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 502

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS 
Sbjct: 503 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 559

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  +L    GS + Q GS    + L FD   ++  +  E+KS+E+ +N  I Q +  
Sbjct: 560 THLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 619

Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              + N E+A    A   L  ++Y D   +  V ++     ++ LCGGTH+ +T  +   
Sbjct: 620 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 676

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            I+S  S  +GI RI A+T   +    L G+ +++ S  S LK    N + ++E
Sbjct: 677 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 726


>gi|74742244|sp|Q5JTZ9|SYAM_HUMAN RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|57209007|emb|CAI40747.1| alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119624673|gb|EAX04268.1| alanyl-tRNA synthetase like [Homo sapiens]
          Length = 985

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 291/942 (30%), Positives = 458/942 (48%), Gaps = 110/942 (11%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D +A          +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    + GG+        + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345
           +DGI P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G AYPEL +   
Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +L  +G+    AG++ +    A EE + RAR        G    +W  +    G  Q  G
Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 506

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                 S      +     +P      G   + +++   + G  V     GQ+  ++ D+
Sbjct: 507 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 561

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D
Sbjct: 562 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 621

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R      H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E
Sbjct: 622 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 681

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681
           + V + + Q+  V       E+   +  A + G +  D V                 +  
Sbjct: 682 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 736

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD- 739
             +     S  LC GTH+  TG +  L I+ +  +  G  R+ A+TG++A ++  +GQ  
Sbjct: 737 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSL 796

Query: 740 --------EKL----KSLASFLKVSQ--GNVVGRVE-EIWEEYRKLQLIH---------- 774
                   E+L    + +A  L++S+  G ++  VE  +  ++++ +L+           
Sbjct: 797 AQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 856

Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829
            A RKLQ+        ++ + +    +I +  S E    L  V+  L ++  S  ++L+ 
Sbjct: 857 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 916

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
                K      V +  +  F A   A      +GG   G R
Sbjct: 917 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958


>gi|148887012|sp|Q4A8G4|SYA_MYCH7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|144575316|gb|AAZ53575.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 883

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 256/774 (33%), Positives = 408/774 (52%), Gaps = 68/774 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +   
Sbjct: 7   NKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD + 
Sbjct: 67  QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G    
Sbjct: 123 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 180

Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+  
Sbjct: 181 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290
            NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I DG+
Sbjct: 241 TNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +   IQ    I + 
Sbjct: 301 QPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRFD--IQT---ISKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + +E+E F KTL+ G  LL+  L  + K++I    V FKL++T+G P+++ ++IL  + +
Sbjct: 356 ILNEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469
                   +Q +E Q   ++       +G  +K+  SL + K   + FIGY         
Sbjct: 414 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 460

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T+ + + +  +  + E V E        V+F++TPFYA AGGQ  
Sbjct: 461 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 505

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I +   ++I DV K     F+++  V +G +     + L +D +NR  L  NHS 
Sbjct: 506 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 562

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  +L    GS + Q GS    + L FD   ++  +  E+KS+E+ +N  I Q +  
Sbjct: 563 THLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 622

Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              + N E+A    A   L  ++Y D   +  V ++     ++ LCGGTH+ +T  +   
Sbjct: 623 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 679

Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            I+S  S  +GI RI A+T   +    L G+ +++ S  S LK    N + ++E
Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 729


>gi|6331226|dbj|BAA86584.1| KIAA1270 protein [Homo sapiens]
          Length = 986

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 290/942 (30%), Positives = 458/942 (48%), Gaps = 110/942 (11%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 47  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 106

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 107 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 166

Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D +A          +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 167 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 225

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    + GG+        + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 226 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 276

Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 277 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 336

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G AYPEL +   
Sbjct: 337 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 396

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 397 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 456

Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +L  +G+    AG++ +    A EE + RAR        G    +W  +    G  Q  G
Sbjct: 457 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 507

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                 S      +     +P      G   + +++   + G  V     GQ+  ++ D+
Sbjct: 508 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 562

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D
Sbjct: 563 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 622

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R      H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E
Sbjct: 623 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 682

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681
           + V + + Q+  V       E+   +  A + G +  D V                 +  
Sbjct: 683 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 737

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD- 739
             +     S  LC GTH+  TG +  L I+ +  +  G  R+ A+TG++A ++  +GQ  
Sbjct: 738 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSL 797

Query: 740 --------EKL----KSLASFLKVSQ--GNVVGRVE-EIWEEYRKLQLIH---------- 774
                   E+L    + +A  L++S+  G ++  VE  +  ++++ +L+           
Sbjct: 798 AQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 857

Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829
            A RKLQ+        ++ + +    +I +  S E    L  V+  L ++  S  ++L+ 
Sbjct: 858 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 917

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
                K      V +  +  F A   A      +GG   G R
Sbjct: 918 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 959


>gi|38569417|ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]
 gi|124297995|gb|AAI31729.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|208967617|dbj|BAG72454.1| alanyl-tRNA synthetase 2, mitochondrial [synthetic construct]
          Length = 985

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 290/942 (30%), Positives = 458/942 (48%), Gaps = 110/942 (11%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D +A          +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    + GG+        + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +L  +G+    AG++ +    A EE + RAR        G    +W  +    G  Q  G
Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 506

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                 S      +     +P      G   + +++   + G  V     GQ+  ++ D+
Sbjct: 507 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 561

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D
Sbjct: 562 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 621

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R      H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E
Sbjct: 622 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 681

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681
           + V + + Q+  V       E+   +  A + G +  D V                 +  
Sbjct: 682 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 736

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD- 739
             +     S  LC GTH+  TG +  L I+ +  +  G  R+ A+TG++A ++  +GQ  
Sbjct: 737 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSL 796

Query: 740 --------EKL----KSLASFLKVSQ--GNVVGRVE-EIWEEYRKLQLIH---------- 774
                   E+L    + +A  L++S+  G ++  VE  +  ++++ +L+           
Sbjct: 797 AQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 856

Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829
            A RKLQ+        ++ + +    +I +  S E    L  V+  L ++  S  ++L+ 
Sbjct: 857 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 916

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
                K      V +  +  F A   A      +GG   G R
Sbjct: 917 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958


>gi|300794887|ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus]
          Length = 983

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 264/820 (32%), Positives = 414/820 (50%), Gaps = 113/820 (13%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
             +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P     
Sbjct: 36  QAAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMA 95

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115
            ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT
Sbjct: 96  GFRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 155

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +TG
Sbjct: 156 QVYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTG 214

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPC+EI +D    + GG         + +E+WNLVFMQ  ++       LP+  +DTG
Sbjct: 215 PCGPCTEIHYD----LAGG-----AGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTG 265

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278
           MGLER+  VLQ + + YD DLF  L+ A  Q  G            EG     +RV+ DH
Sbjct: 266 MGLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADH 325

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337
           +R+ S  IADG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G AY
Sbjct: 326 IRTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAY 385

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHG 395
           PEL ++   I   +  ++  F  +L RG  +++  L  LG  ++   +VA+   L    G
Sbjct: 386 PELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLG 445

Query: 396 LPLDIMQDILCARGL----AGIDIISFNQA---------LEEQRSRARAHSLG----LGS 438
           LPLD+++ +L  +G+    AG++ ++  +A         ++EQ  R   H+LG     G 
Sbjct: 446 LPLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNVHALGELQRRGV 505

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
             T+        KY       Y L  G  +    +   C+          + +++   + 
Sbjct: 506 PPTDD-----SPKY------SYSLQPGGSY----KFGTCE----------AQVLQLYTED 540

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHH 557
           G  V     GQ   ++ D+T FYAE GGQ  D G  +  G +  +  V + +  G F+ H
Sbjct: 541 GTAVASIGDGQHCGLLLDKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILH 600

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +V    LR    + L +D   R      H+A HLL+ AL  +LG    Q GS + P+ L
Sbjct: 601 EVVAPERLRVGDQVQLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERL 660

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFDV    P+T  +L+++E  V            + + R++A+     AL  T +   +R
Sbjct: 661 RFDVATQAPLTPEQLRAVEVTVQ-----------KAVGRDEAVYMEEVALARTAHVPGLR 709

Query: 678 VVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSI 716
            +   Y D                      +H+S  LC GTH+  TG I  L I+ E  +
Sbjct: 710 SLDEVYPDPVRVVSVGVPVAHALDPASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQL 769

Query: 717 RAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGN 755
             GI R+ A+ G++A ++  +GQ    +  A+  ++SQG+
Sbjct: 770 VKGITRLLAVNGEQAQQAREVGQRLAQEVEAAAARLSQGS 809


>gi|240047430|ref|YP_002960818.1| alanyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239985002|emb|CAT04995.1| Alanyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 884

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 294/912 (32%), Positives = 443/912 (48%), Gaps = 95/912 (10%)

Query: 2   SNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +N+SS  IR  +L+FF    H ++ S SLIP NDP+L++ NSG+   K  FTG ++P  +
Sbjct: 3   TNLSSKQIRQLWLDFFASKNHLIVESKSLIPQNDPSLLWINSGVATLKEYFTGHKQPPSK 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            +T  QK +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ L     
Sbjct: 63  RITNSQKAIRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEFAFEFLVYVLK 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  +LYIT + +D E  K W+ + G+  D +I      NFW +   GPCGPCSEI++D+
Sbjct: 119 MDLDKLYITYFSDDLETKKYWQDL-GIQDDHLIAGNQKTNFWDIG-LGPCGPCSEIYYDR 176

Query: 180 GECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           GE        L  +  E +R+IEIWN+VF +F    +     L   +IDTG G ER+ ++
Sbjct: 177 GEKFDSRGIELLKNDIENDRFIEIWNIVFSEFNNDGEGNYTPLVSKNIDTGAGFERIVSI 236

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDHLRSSSFL 285
           LQ    N+D DLF  +I   E+++  KY+ +N               +VI DH+RS    
Sbjct: 237 LQNGPTNFDTDLFLPIILEVEKLSDFKYDVDNYFKKDKKQTKINTYFKVIADHIRSVVNA 296

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P+N  RGY++RR++RRA    R LG  +  +  L+  + + +     E   AK+
Sbjct: 297 INDGVEPSNTHRGYIIRRLIRRAFRMGRKLGIKQAFLYKLVGVVKSSLIYDIDEKKVAKI 356

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
                ++ E+E F KT++ G +LL+      GK+   N ++ FK+++T+G P+++ Q+IL
Sbjct: 357 -----IKKEEELFEKTIENGEILLNREFEKNGKN--FNIEIVFKMFETYGFPIELTQEIL 409

Query: 406 CARGLA-GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
             +GL    D I   +      SR + H LG+            KE    ++F+GY+ L 
Sbjct: 410 EEKGLKLDFDKIEELKEKHANLSRGKQH-LGMNLAINSLALIKGKE----SEFVGYEHLE 464

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +       K+L       L N  S +     Q+ EI            +FD+TPFYA  
Sbjct: 465 QTA------KILF------LANNESLL--ETTQEDEI---------SYAIFDKTPFYATG 501

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D G  I    +++I  V K     + ++  V +G+L     + L +D  NRR L 
Sbjct: 502 GGQKHDQGLIIQGDNKIEIIKVFKDK---YFNNIHVFKGVLNKNEEVKLIVDEANRRNLE 558

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLL  AL    G  + Q GS    + L FD   SK  T  EL  +E  VN  I 
Sbjct: 559 RNHSATHLLFKALREQFGLQIKQLGSDNNENRLTFDFPVSKKPTDEELAKVESLVNFYIQ 618

Query: 645 QNLPVVTRIMN---REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + P   + +N   +E    +    L   +Y D   V  V ++  G+ ++ LCGGTH+++
Sbjct: 619 SSTP--RKYLNTTIKEAEKLNAIMTLEEAEYMDPKNVRLVHFQ--GI-TTDLCGGTHIAN 673

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN------ 755
           T  I    I+S  +  +G+ RI AIT        + Q  + K L S   + Q N      
Sbjct: 674 TSLIQKFKIISCQNKGSGVFRIRAITTLEKYYDYLTQQVEQKEL-SLAAIEQKNRQFDPF 732

Query: 756 ---VVGRVE--EIWEEYRKLQLIHAK-RKLQLNVED----------LSCHKIADVNFMSH 799
               V RV   EI      L +  AK   LQL               +  KI   N    
Sbjct: 733 YKMQVHRVNDLEILNNNLDLAIKQAKLDTLQLIKNKKKEEKTTDFIFNQEKIFTFNNQDF 792

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
            I  +  K++ S   A   + +   I  V + +     +L+VV+       N++D+    
Sbjct: 793 YIDFITDKQINSKQLAATLREEHANITFVLLQEMAAQKILVVVSSKTN---NSLDILNKI 849

Query: 860 AKVLGGGGGGGR 871
            K+  G GGG +
Sbjct: 850 NKIFDGKGGGNK 861


>gi|297489033|ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos
           taurus]
 gi|296474486|gb|DAA16601.1| alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus]
          Length = 983

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 264/820 (32%), Positives = 414/820 (50%), Gaps = 113/820 (13%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
             +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P     
Sbjct: 36  QAAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMA 95

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115
            ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT
Sbjct: 96  GFRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 155

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +TG
Sbjct: 156 QVYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTG 214

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPC+EI +D    + GG         + +E+WNLVFMQ  ++       LP+  +DTG
Sbjct: 215 PCGPCTEIHYD----LAGG-----AGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTG 265

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278
           MGLER+  VLQ + + YD DLF  L+ A  Q  G            EG     +RV+ DH
Sbjct: 266 MGLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADH 325

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337
           +R+ S  IADG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G AY
Sbjct: 326 IRTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAY 385

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHG 395
           PEL ++   I   +  ++  F  +L RG  +++  L  LG  ++   +VA+   L    G
Sbjct: 386 PELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLG 445

Query: 396 LPLDIMQDILCARGL----AGIDIISFNQA---------LEEQRSRARAHSLG----LGS 438
           LPLD+++ +L  +G+    AG++ ++  +A         ++EQ  R   H+LG     G 
Sbjct: 446 LPLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNVHALGELQRRGV 505

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
             T+        KY       Y L  G  +    +   C+          + +++   + 
Sbjct: 506 PPTDD-----SPKY------SYSLQPGGSY----KFGTCE----------AQVLQLYTED 540

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHH 557
           G  V     GQ   ++ D+T FYAE GGQ  D G  +  G +  +  V + +  G F+ H
Sbjct: 541 GTAVASIGDGQHCGLLLDKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILH 600

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +V    LR    + L +D   R      H+A HLL+ AL  +LG    Q GS + P+ L
Sbjct: 601 EVVAPERLRVGDQVQLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERL 660

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFDV    P+T  +L+++E  V            + + R++A+     AL  T +   +R
Sbjct: 661 RFDVATQAPLTPEQLRAVEVTVQ-----------KAVGRDEAVYMEEVALARTAHVPGLR 709

Query: 678 VVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSI 716
            +   Y D                      +H+S  LC GTH+  TG I  L I+ E  +
Sbjct: 710 SLDEVYPDPVRVVSVGVPVAHALDPASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQL 769

Query: 717 RAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGN 755
             GI R+ A+ G++A ++  +GQ    +  A+  ++SQG+
Sbjct: 770 VKGITRLLAVNGEQAQQAREVGQRLAQEVEAAAARLSQGS 809


>gi|284931130|gb|ADC31068.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 902

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 269/929 (28%), Positives = 438/929 (47%), Gaps = 109/929 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF+   HE++ S SL+P NDP+L++ N+G+   K  F+G+E P+   +   
Sbjct: 8   SQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLANS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+RA    ND++NVG T+RHHT FEMLGNFS G YFK+ AI+  ++LLTK + L++ +
Sbjct: 68  QRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYIT+Y++D +AF  W    G+    IIR     NFW +  +GPCGP +EI++D+GE   
Sbjct: 124 LYITIYEDDNDAFNYWVD-QGIDPHHIIRCDKKRNFWDLG-SGPCGPSTEIYYDRGEKYD 181

Query: 185 GGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        E +RYIE+WN+VF QF          L + +IDTG  LER A +LQ+
Sbjct: 182 PNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELVRKNIDTGASLERFACILQD 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------------RVIVDHLRSSSF 284
              NYD DL+  +I+  E+ T  KY    +V+H               RVI DHL+   F
Sbjct: 242 VPTNYDTDLYLPIIRTIEKHTNHKY----VVDHYFSKDQSEQDVLRAFRVIADHLKCGVF 297

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            IADG+LP  + R Y++R+++RRA  YA+ L      ++  +  +       +  LI  K
Sbjct: 298 AIADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            ++ + + +E   F KTLD G  + +   +       +  ++ FKL +T+G PLD++++ 
Sbjct: 358 EIVIQAITNEANNFTKTLDYGFEIFNEAKTTNN----ITAEMIFKLVETYGFPLDLIKE- 412

Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           L A     +D+  F +  ++ +  S+A    +GL       + F  + K+       YD 
Sbjct: 413 LSAEAKIKLDLDGFEELFKKHQEISKANNGEVGLKKQNENLLKFETQSKF------YYD- 465

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                  N + + V AI        + +       VF+ TP YA
Sbjct: 466 ----------------------KNNIKTKVVAIFDDKFNPVDQIEVGSGWAVFESTPIYA 503

Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +GGQ  D G  +  G + +   +V K      +HH   ++        + L  D   R+
Sbjct: 504 TSGGQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLHH--FKKASFWLNEKVELMHDENWRK 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NHS  H+LH  L   +   + Q+G+  +      D  +   +T  +L  IE  +  
Sbjct: 562 LVRKNHSLEHILHATLKNTINETIKQSGAFKSAAKATLDFNYPTKLTDEDLDKIETKMRQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +IA  +PV    ++ E +    A A    +Y  ++ +RV+ +     G +S  LCGGTHV
Sbjct: 622 VIADKIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIKI-----GDYSVELCGGTHV 676

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLK-------------SL 745
            +T EI   +I    S+ AG  RIE I+  +   ++L+ +  ++K              L
Sbjct: 677 DNTKEIEECFITDLYSLGAGRWRIEIISSYETIYNYLVDKQNEIKQEKNHMFNELGNYDL 736

Query: 746 ASFLKVSQG--------------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             +L  S+                 +   E+I EEY+ ++L   K+K +     +   K+
Sbjct: 737 THYLDFSKKLHSFNLPTSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIK--KL 794

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           A  N    I+     KE    +     ++  +    +   I+K       ++  ++  D+
Sbjct: 795 ALDNLEHKIVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKSDNKINYLIGIKNATDK 854

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            NA  L      V+ G  GGG+ + AQ G
Sbjct: 855 LNA-KLLIDKVNVMFGAKGGGKQNFAQGG 882


>gi|68074667|ref|XP_679250.1| alanine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56499954|emb|CAH95111.1| alanine--tRNA ligase, putative [Plasmodium berghei]
          Length = 1076

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 258/839 (30%), Positives = 423/839 (50%), Gaps = 126/839 (15%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R  F+ +F+   H ++ S+S+IP ND TL+FTN+GM  FK IF G      +    +  
Sbjct: 53  VRNNFINYFKNKDHTIVDSASVIPYNDNTLLFTNAGMNQFKKIFLGNVDKNSDLGKLKRC 112

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I+ AWDLLT  + ++
Sbjct: 113 VDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIEYAWDLLTNVYKIN 172

Query: 122 QRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             RLY+T +  D+         EA K+W K   L   +I+     DNFW MAETGPCGPC
Sbjct: 173 PNRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDEKRILPFGMKDNFWEMAETGPCGPC 230

Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SEI +D+     G    S   +++    +EIWN+VFMQ+ +   +    LP   IDTGMG
Sbjct: 231 SEIHYDR----IGNRDASDLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPSPCIDTGMG 286

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGNNIVN----------HRVIV 276
           LER+ ++LQ   +NYD DLF  + +  +++       Y+G   +N          +RVI 
Sbjct: 287 LERITSILQNVQSNYDTDLFTPIFKQIKEIFNDNIPSYQGK--INEQDPDKIDYAYRVIS 344

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEM 333
           DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   +  ++    L+ ++C  +
Sbjct: 345 DHIRCATIAISDGCIPSNEGRNYVIRRIIRRAIRVGKQVFNIKSNVLWFYKLVDSVCKIL 404

Query: 334 GSAYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDV 386
           G+ + +L   + +  I+  +  E+  F KTL++G+   + ++          + + +G  
Sbjct: 405 GNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKIIKRCHQNPSNNNNLFSGKD 464

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG---TTEK 443
           AF LY ++G P+D+++ I+C      +++  FN   ++ +  +  ++  +        EK
Sbjct: 465 AFDLYTSYGFPIDLIE-IMCEEKSVKLNMEEFNTLFKKHQLVSDTNNFKINKVIDLPVEK 523

Query: 444 IWFSLKEKYGATQFIGY------DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
               +K KY     I Y      +     K  +E++  L  K  + +     + +  I+ 
Sbjct: 524 A-HDIKCKYNVLPTIDYHKYNWNNTFEVPKSKEENKNNLRLKSSVQIIYD-GNFLDEIMH 581

Query: 498 QGEIVEEAVSGQKVE-------VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
             +  +E +S  KVE       ++  +T FY E GGQ+ DTG    + ++ Q+ +VQK +
Sbjct: 582 TDDEAKEPLSCVKVENKQKKYALILKETNFYYENGGQIYDTGFIQNESMKFQVLNVQKMS 641

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS---- 606
           + I +H  ++  G ++    +   +D++ R+ ++ NH+ATHLL+ +L  +L   ++    
Sbjct: 642 DYI-LHIGVLLSGCIKKNDIIEAVVDFERRKLIACNHTATHLLNFSLRKVLADQMNQKKN 700

Query: 607 ------------------------------------------QNGSCITPDGLRFDVTHS 624
                                                     Q GS +  + LRFD +  
Sbjct: 701 KCDNKDENKKVSLEDSNTIKNKLEENSSCNNNSNGSSIFNCEQKGSLVDDEKLRFDFSFI 760

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVEY 683
           + I +  L  IE  +N+I+ + L V  + M+  E     G  A+    Y+D+V VV +  
Sbjct: 761 QNINTDVLNKIETEINNIVKEELDVSVKTMDLTESKKIKGIRAIFEEDYSDKVNVVFISK 820

Query: 684 EDGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               V ++            LCGGTH+ +T  I    I SE SI  GI RI A+T ++A
Sbjct: 821 NADNVLNNLDVNYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGIHRINAVTNKKA 879


>gi|269114905|ref|YP_003302668.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma
           hominis]
 gi|268322530|emb|CAX37265.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma
           hominis ATCC 23114]
          Length = 887

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 283/922 (30%), Positives = 465/922 (50%), Gaps = 115/922 (12%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF+  GH ++PS SLIP NDP+L++ NSG+   K+ F+G++ P  + 
Sbjct: 1   MLTSKEIRKMWLDFFKSKGHLVVPSKSLIPQNDPSLLWINSGVATLKDYFSGKKIPPAKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI   ++ +     L
Sbjct: 61  ITNSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEAIAFGYEFIFNVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +++ +YIT Y ED++ +  W   +G+    +I+ + + NFW + + GPCGP +EIF+D+G
Sbjct: 117 NKQNIYITYYSEDKDTYNYWIS-NGIDPSHMIKGSRDTNFWDVGQ-GPCGPDTEIFYDRG 174

Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L  +  E +RYIEIWN+VF QF    +     L   +IDTG GLER+ ++L
Sbjct: 175 TKYDTRGIELLENDIENDRYIEIWNIVFSQFNNDGENNYTELATKNIDTGAGLERITSIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLI 286
           Q+   N+D DLF  +I A+E++T   Y+ NN               ++I DH+R+S   I
Sbjct: 235 QDAPTNFDTDLFLPIIHATEKLTNKHYDINNYFTKEPIQMKINTQFKIIADHIRASVNAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE--MGSAYPELIQAK 344
           +DG+ P+N GRGY++RR++RRA      LG T+   ++ L  +  +  +     E ++  
Sbjct: 295 SDGVKPSNIGRGYIIRRLIRRAYRAGISLGITQKAFLYELVQIVKDSLIYDIDVEEVKKV 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           +L EE L      F KT++ G  LL+     + K+  ++  +AFK++DT+G P+++ ++I
Sbjct: 355 ILDEENL------FAKTINEGEKLLN---QEIEKNGTIDVKIAFKMFDTYGFPIELTREI 405

Query: 405 LCARGLAGIDIISFNQALEEQRSRARA----------HSLGLGSGTTEKIWFSLKEKYGA 454
           L  + +  ID+  FN+ L++ + ++R           +SL L    T+KI          
Sbjct: 406 LQEKNI-DIDMNEFNEFLKQHQEKSRGNIEAGMQKVINSLSL---ITDKI---------- 451

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           ++F+GYD  +                        +S +  ++   E +  A   +   ++
Sbjct: 452 SEFVGYDHTK-----------------------TTSKILYLLNSEEKINNAGEDEVSYLI 488

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+TPFYA +GGQ  D G  +    R+++ DV K     + +H  V +G + +   +   
Sbjct: 489 LDKTPFYATSGGQNHDEGYILQGNNRIEVLDVFKDK---YWNHVHVVKGKINSNEPVQCF 545

Query: 575 IDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D   R   + NHS+THL+  AL  T     + Q GS IT +   FD       T  E+K
Sbjct: 546 VDEDKRINFARNHSSTHLMFSALRETYPNEIIKQLGSNITYEHFTFDFGLDHRPTKEEIK 605

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSA 692
            IE  +   IA+++     I + + A   GA   +  ++Y+D   +  VE+E  G+ +  
Sbjct: 606 LIEHKMRQYIARDVKRNYIITSLKKAEEMGAYMTIDESEYHDANYIRVVEFE--GI-TKD 662

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQ-DEKLKSLASFLK 750
           LCGGTHV  +G I    IV+  S   GI R+  +T     R +L+ +  EK K L + +K
Sbjct: 663 LCGGTHVPHSGIIEDFKIVAVDSKGTGIYRLRVVTSYDLVRKYLLSEIQEKQKILDTLIK 722

Query: 751 VSQ---------------GNVVGRVEEIWEEYRKLQ--LIHAKRKL----QLNVEDLSCH 789
            +Q                N    +EE+ EEY K +  L +  R L    Q    DLS +
Sbjct: 723 NNQKLNEGYNFKYTKEIISNKTSDLEELLEEYDKCEEKLRNDYRALLKQKQSEDVDLSLY 782

Query: 790 KIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
               +N     ++  ++   +K V  +L++     II++  ++K K+ S    V      
Sbjct: 783 NYETINDKKVFLLINIEQSLIKKVSISLREANPDSIIII--LNKSKQDSYYFAVAS---K 837

Query: 849 RFNAVDLARLSAKVLGGGGGGG 870
           ++++  + +   KVL   GGG 
Sbjct: 838 KYDSNAIFKNLGKVLNIHGGGN 859


>gi|159473717|ref|XP_001694980.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276359|gb|EDP02132.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 750

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 258/762 (33%), Positives = 380/762 (49%), Gaps = 66/762 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
           S  R  F EFF+  GH    SSS++P NDPTL+FTN+GM  FK +F G   P       +
Sbjct: 3   SRTRAAFNEFFETKGHTYWASSSVVPHNDPTLLFTNAGMNQFKPVFLGTVDPNSDMGKMK 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDLD+VG+   HHTFFEMLGN + G Y   +A+ L          
Sbjct: 63  RACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNCACGRYPCTQALLLIAHARLPLAL 122

Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L   RLY T +          D+EA ++W +   L   +++     +NFW M + GPCGP
Sbjct: 123 LPAERLYATYFRGDPAMGLPADDEAREIWLRF--LPESRVLPYGNKENFWEMGDQGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI FD+     GG   ++    +    +EIWN VF+QF ++       LP   +DTGM
Sbjct: 181 CTEIHFDR----IGGRDAAALVNADDPNVLEIWNNVFIQFNREPDGSLKSLPAKHVDTGM 236

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279
           GLER+ +VLQ K +NY  DLF  +  A + VTG +   + I         + +RV+ DH+
Sbjct: 237 GLERITSVLQGKMSNYATDLFGPIFDAIQAVTGARDYTDKIGKDDSDGVDMAYRVVADHI 296

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ SF IADG  P NEGR YVLRRI+RRA+ Y R  LG  E     L+  +    G  +P
Sbjct: 297 RTLSFSIADGARPGNEGRDYVLRRILRRAVRYGREKLGAKEGFFAGLVDVVVAHFGGFFP 356

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL++ +  I   LR E+  F +TL +G+       +    D  + G  AF L+DT G P+
Sbjct: 357 ELVKQRDTIFGVLREEEAAFSRTLIKGIERFKKAAAG-ATDGKIPGPEAFVLWDTFGFPV 415

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSR--ARAHSLGLGSG-TTEKIWFSLKEKY-GA 454
           D+ Q +   RG+A +D+  +  A+ E R +        G   G  +  +   L   Y GA
Sbjct: 416 DLTQLMAEERGMA-VDMAGYEAAMAEAREKMGETGRHGGFHHGVASSMVCAKLHGTYTGA 474

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV--EEAVSGQKVE 512
           T            +  +  K             VS+ V AI+  G      +   G  V 
Sbjct: 475 TVNSIPISPPPPDWQNDAPKYGSAD--------VSAKVLAILTSGGFAAGSQEAEGGLVG 526

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHA-IVERGILR 566
           +V D T FYAE+GGQ       +           ++      A G  +H   + E G + 
Sbjct: 527 LVLDTTSFYAESGGQHFSPSPELLTKFSSPSTSPELLTNPTVAAGYVLHVGEVAEGGQVA 586

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++ +++DY+ R  +  NH+ TH+L++AL ++LG HV Q GS + PD LRFD +++ P
Sbjct: 587 VGEAVTVSVDYERRGLIKPNHTFTHVLNYALKSVLGDHVDQKGSIVLPDKLRFDFSNAGP 646

Query: 627 ITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSV---- 681
           + +A+L ++E    + +A  +PV  T +   +    +G  A+ G  Y D VRVVS+    
Sbjct: 647 VEAAQLAAVEKICREAVAAAMPVFGTEVPLAQAKSINGLRAVFGEVYPDPVRVVSIGRSV 706

Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
                  + +    +S   CGGTH+++T E     ++SE  I
Sbjct: 707 ADLLADPKADANAAYSIEFCGGTHLANTQEAEAFALLSEEGI 748


>gi|297678244|ref|XP_002816983.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 985

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 260/793 (32%), Positives = 404/793 (50%), Gaps = 75/793 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VG+   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +D D +A          +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWVSYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    + GG+        + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++  +L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSVEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +L  +G+    AG++ +    A EE + RAR        G    +W  +    G  Q  G
Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVKKQG----LWLDV-HALGELQRQG 506

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S         L      +     + +++   + G  V     GQ+  ++ D+T 
Sbjct: 507 VPPTDDSPKYNYS---LQPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTN 563

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQ  D G  +  G    +  V + +  G F+ H  V    L+    + L +D  
Sbjct: 564 FYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKA 623

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      H+ATHLL+ AL   LG    Q GS ++P+ LR DVT   P+T  +L+++E+ 
Sbjct: 624 WRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLSPEQLRLDVTTQTPLTPEQLRAVENT 683

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSVEY 683
           V + + Q+  V       E+   +  A + G +  D V                 +    
Sbjct: 684 VQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPAS 738

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEKL 742
           +     S  LC GTH+  TG +  L I+ +  +  G  R+ AITG++A ++  +GQ    
Sbjct: 739 QAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQ 798

Query: 743 KSLASFLKVSQGN 755
           +  A+  ++SQG+
Sbjct: 799 EVKAATERLSQGS 811


>gi|109071333|ref|XP_001099647.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Macaca
           mulatta]
          Length = 985

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 284/941 (30%), Positives = 452/941 (48%), Gaps = 108/941 (11%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + +   
Sbjct: 106 QKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPTE 165

Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +D D +A          +W  + G+ A +++     +NFW M  TGPCGPC+EI
Sbjct: 166 RLWVSYFDGDPKAGLEPDLETRDIWLSL-GVPATRVLSFGPQENFWEMGNTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    + GG+        + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQWHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLHAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH--GLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L  +   GLPLD+++ 
Sbjct: 396 QISNLVLEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLSGDLGLPLDMVEL 455

Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +L  +G+     G++ ++   A  + R        GL        W  +    G  Q  G
Sbjct: 456 MLEEKGVQLDSTGLERLAQEAAQHQARQAEPVQKQGL--------WLDV-HALGELQHQG 506

Query: 460 YDLLRGS-KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                 S K+    R         +     + +++   + G  V     GQ+  ++ D+T
Sbjct: 507 VPPTDSSPKYNYSLRP----NGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRT 562

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDY 577
            FYAE GGQ  D G  +  G    +  V + +  G F+ H  V    L+    + L +D 
Sbjct: 563 NFYAEQGGQASDRGYLVRVGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDK 622

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATHLL+ AL   LG    Q GS + P+ LR DVT    +T   L+++E+
Sbjct: 623 AWRLACMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTALTPERLRAVEN 682

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSVE 682
            V + + Q+ PV       E+   +  A + G +  D V                 +   
Sbjct: 683 TVQEAVQQDKPVYM-----EEVPLALTAQVPGLRCLDEVYPDPVRVVSVGVPVAHALDPA 737

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEK 741
            +     S  LC GTH+  TG +  L I+ +  +  G  R+ AITG++A ++  +GQ+  
Sbjct: 738 SQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQNLA 797

Query: 742 LKSLASFLKVSQGNV-----------VGRVEE-----IWEEYRKLQLIH----------- 774
            +  A+  ++SQG+            +GR+ E     +  ++++ +L+            
Sbjct: 798 QEVKAATERLSQGSRDVAEALRLSKDIGRLIEAVETSVMPQWQRRELLATLKMLQRRANT 857

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVGI 830
           A RKLQ+        ++ + +    +I +  S E    L  V+  L ++  S  ++L+  
Sbjct: 858 AIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSP 917

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
               K      V +  +  F A   A      +GG   G R
Sbjct: 918 QSMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958


>gi|289758684|ref|ZP_06518062.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289714248|gb|EFD78260.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85]
          Length = 702

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 256/668 (38%), Positives = 373/668 (55%), Gaps = 38/668 (5%)

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+
Sbjct: 1   MDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDR 60

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLER 232
           G E  P G P  SE+  RY+E+WNLVFMQ E+     K++  IL   P+ +IDTGMG+ER
Sbjct: 61  GPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVER 118

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADG 289
           +A VLQ+  N Y+ DL + +I    +V    Y+ GN  + V +R+I DH R+++ LI DG
Sbjct: 119 IALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDG 178

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I  
Sbjct: 179 VSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISR 238

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++   
Sbjct: 239 IAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAE 298

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR S+
Sbjct: 299 TGLQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQ 356

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                  V  ++ P+ + +GV+               A  GQ+VE+V D+TP YAE+GGQ
Sbjct: 357 ARILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQ 402

Query: 528 LGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           + D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D   RR  
Sbjct: 403 IADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGA 462

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +
Sbjct: 463 TQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAV 522

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +  V T     + A A GA AL G  Y D VRVV    E GG  S  LCGGTHVS+T 
Sbjct: 523 QADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTA 578

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  +
Sbjct: 579 QIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANL 638

Query: 764 WEEYRKLQ 771
            E  R  +
Sbjct: 639 VERLRAAE 646


>gi|281345697|gb|EFB21281.1| hypothetical protein PANDA_002397 [Ailuropoda melanoleuca]
          Length = 974

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 289/945 (30%), Positives = 448/945 (47%), Gaps = 153/945 (16%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
           +   ++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P    
Sbjct: 37  AQARAVRDAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEM 96

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114
             ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LL
Sbjct: 97  AGFRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 156

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+ + + + RL+++ +        D D E+  +W  + G+    ++     +NFW M +T
Sbjct: 157 TQVYGIPEDRLWVSYFGGDPKAGLDPDLESRDIWLSL-GVRDSHVLSFGPEENFWEMGDT 215

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPC+EI +D    +  G P       + +E+WNLVF+Q  ++       LP+  +DT
Sbjct: 216 GPCGPCTEIHYDLAGRV--GAP-------QLVELWNLVFIQHNREADGSLQPLPQRHVDT 266

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVD 277
           GMGLER+  VLQ   + YD DLF  L++A  Q           G   EG   + +RV+ D
Sbjct: 267 GMGLERLVAVLQGTRSTYDTDLFSPLLKAIHQGCRAPPYLGRVGAADEGRTDMAYRVVAD 326

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336
           H+R+ S  IADG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G A
Sbjct: 327 HIRTLSVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDA 386

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL------ 390
           YPEL +    I   +  ++  F  +L RG  ++D  L  LG  E+   +VA+ L      
Sbjct: 387 YPELQKNSAQIAHLVSEDEAAFLASLQRGRQIIDRTLRRLGPSELFPAEVAWSLSLAGNL 446

Query: 391 ----------YDTHGLPLDIMQDILCARGLAGIDIISFNQA---------LEEQRSRARA 431
                      +  G+ LD           AG+  ++  +A         ++EQ  +   
Sbjct: 447 GLPLDLLELMLEEKGVQLDS----------AGLARLAQEEAQHRSQQSEPVQEQGLQLNV 496

Query: 432 HSLG----LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           H+LG     G   T+    S K  Y      GY+      F   + +VL           
Sbjct: 497 HALGELQRRGVPPTDD---SPKYNYSLRPSGGYE------FSACEAQVL----------- 536

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV- 546
                +   + G  V     GQ+  ++ D+T FYAE GGQ  D G  +  G    +  V 
Sbjct: 537 -----QLYTEDGTAVASVGKGQRCGLLLDKTNFYAEQGGQASDRGYLVRVGQEDVLFPVA 591

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q +  G F+ H  V    L+    + L +D   R +    H+ATHLL  AL   LG H  
Sbjct: 592 QAQVCGGFILHEAVAPEGLKVGDQVQLHVDEAWRLRCMEKHTATHLLSWALRQTLGPHTE 651

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q GS ++P+ LRFDV    P+T  +L+++E  V D + Q+ PV       ED   +  A 
Sbjct: 652 QRGSHLSPERLRFDVATQAPLTPEQLRAVEGTVQDAVGQDEPVYM-----EDVALALTAH 706

Query: 667 LLGTKYNDRV---------------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + G +  D V               R +    +     S  LC GTH+  TG +  L IV
Sbjct: 707 VPGLRSLDEVYPDPVRVVSVGVPVARALDPASQAALRTSVELCCGTHLLRTGAVGDLVIV 766

Query: 712 SESSIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            E  +  G  R+ A+TG++A ++  +GQ+   +  A+  ++S+G+               
Sbjct: 767 GERQLTKGTTRLLAVTGEQAQQAREVGQNLAQEVEAATERLSRGS--------------- 811

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML--- 827
           Q + A ++L  +V  L+     D   M     +   +EL++ + ALQ++  + I  L   
Sbjct: 812 QDVAAAQRLSKDVGRLT--DAVDTALM----PQWQRRELQAALKALQRRANAAIRKLELG 865

Query: 828 -VGISKEKKAS-------VLIVVTEDLLDRFNAVDLARLSAKVLG 864
               + E+ A+       VL+ V   L +R     +  LS +  G
Sbjct: 866 QAAGNPERGAATVCPPSQVLVKVVRQLCERAPGTSVLLLSPQPRG 910


>gi|217033203|ref|ZP_03438652.1| hypothetical protein HPB128_150g3 [Helicobacter pylori B128]
 gi|216945067|gb|EEC23779.1| hypothetical protein HPB128_150g3 [Helicobacter pylori B128]
          Length = 496

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/460 (44%), Positives = 293/460 (63%), Gaps = 15/460 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG   +P      + Q
Sbjct: 3   IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +T
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLET 356

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+ G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   
Sbjct: 357 LESGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENC 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           ++EQ  R++A   G  +      + ++   Y    F+GY+
Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYE 452


>gi|47168789|pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
           Alanyl-Trna Synthetase
          Length = 465

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/457 (44%), Positives = 290/457 (63%), Gaps = 14/457 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL FF+K GH  + S+ L+P NDPTL+F N+G VPFKN+F G EK  Y+  T+ QK
Sbjct: 8   IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPYKRATSCQK 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+ VG T+RHHTFFE LGNFSFG YFK+ AI+ AW+ +T+   L + +LY
Sbjct: 68  CLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLY 127

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++VY +DEEA+++W +  G+ +++I R+   DNFW   + GPCGP SEI+ D+GE   G 
Sbjct: 128 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQXGDVGPCGPSSEIYVDRGEEYEG- 186

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                   ERY+EIWNLVF Q+ +        LP  +IDTG GLER+A+VLQ K +N++I
Sbjct: 187 -------DERYLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLERIASVLQGKNSNFEI 239

Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D+   LIQ  E+V+G KY  +    V  RVI DHLR+ +F I+DG++P+NEGRGYV+RRI
Sbjct: 240 DIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA  +   LG   P +   +  +       YPEL  ++  ++  ++ E++RF KTL  
Sbjct: 300 LRRAXRFGYKLGIENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVKGEEKRFIKTLKA 359

Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           G   +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F   L
Sbjct: 360 GXEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGFQCEL 418

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           EEQR RAR H   + +   + ++  LKE    + F+G
Sbjct: 419 EEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVG 454


>gi|301757306|ref|XP_002914501.1| PREDICTED: LOW QUALITY PROTEIN: probable alanyl-tRNA synthetase,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 984

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 279/897 (31%), Positives = 431/897 (48%), Gaps = 142/897 (15%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
           +   ++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P    
Sbjct: 37  AQARAVRDAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEM 96

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114
             ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LL
Sbjct: 97  AGFRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 156

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+ + + + RL+++ +        D D E+  +W  + G+    ++     +NFW M +T
Sbjct: 157 TQVYGIPEDRLWVSYFGGDPKAGLDPDLESRDIWLSL-GVRDSHVLSFGPEENFWEMGDT 215

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPC+EI +D    +  G P       + +E+WNLVF+Q  ++       LP+  +DT
Sbjct: 216 GPCGPCTEIHYDLAGRV--GAP-------QLVELWNLVFIQHNREADGSLQPLPQRHVDT 266

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVD 277
           GMGLER+  VLQ   + YD DLF  L++A  Q           G   EG   + +RV+ D
Sbjct: 267 GMGLERLVAVLQGTRSTYDTDLFSPLLKAIHQGCRAPPYLGRVGAADEGRTDMAYRVVAD 326

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336
           H+R+ S  IADG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G A
Sbjct: 327 HIRTLSVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDA 386

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL------ 390
           YPEL +    I   +  ++  F  +L RG  ++D  L  LG  E+   +VA+ L      
Sbjct: 387 YPELQKNSAQIAHLVSEDEAAFLASLQRGRQIIDRTLRRLGPSELFPAEVAWSLSLAGNL 446

Query: 391 ----------YDTHGLPLDIMQDILCARGLAGIDIISFNQA---------LEEQRSRARA 431
                      +  G+ LD           AG+  ++  +A         ++EQ  +   
Sbjct: 447 GLPLDLLELMLEEKGVQLDS----------AGLARLAQEEAQHRSQQSEPVQEQGLQLNV 496

Query: 432 HSLG----LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           H+LG     G   T+    S K  Y      GY+      F   + +VL           
Sbjct: 497 HALGELQRRGVPPTDD---SPKYNYSLRPSGGYE------FSACEAQVL----------- 536

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV- 546
                +   + G  V     GQ+  ++ D+T FYAE GGQ  D G  +  G    +  V 
Sbjct: 537 -----QLYTEDGTAVASVGKGQRCGLLLDKTNFYAEQGGQASDRGYLVRVGQEDVLFPVA 591

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q +  G F+ H  V    L+    + L +D   R +    H+ATHLL  AL   LG H  
Sbjct: 592 QAQVCGGFILHEAVAPEGLKVGDQVQLHVDEAWRLRCMEKHTATHLLSWALRQTLGPHTE 651

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q GS ++P+ LRFDV    P+T  +L+++E  V D + Q+ PV       ED   +  A 
Sbjct: 652 QRGSHLSPERLRFDVATQAPLTPEQLRAVEGTVQDAVGQDEPVYM-----EDVALALTAH 706

Query: 667 LLGTKYNDRV---------------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + G +  D V               R +    +     S  LC GTH+  TG +  L IV
Sbjct: 707 VPGLRSLDEVYPDPVRVVSVGVPVARALDPASQAALRTSVELCCGTHLLRTGAVGDLVIV 766

Query: 712 SESSIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            E  +  G  R+ A+TG++A ++  +GQ+   +  A+  ++S+G+               
Sbjct: 767 GERQLTKGTTRLLAVTGEQAQQAREVGQNLAQEVEAATERLSRGS--------------- 811

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           Q + A ++L  +V  L+     D   M     +   +EL++ + ALQ++  + I  L
Sbjct: 812 QDVAAAQRLSKDVGRLT--DAVDTALM----PQWQRRELQAALKALQRRANAAIRKL 862


>gi|294660251|ref|NP_852904.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|83305848|sp|Q7NBY8|SYA_MYCGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|284811906|gb|AAP56472.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930365|gb|ADC30304.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 902

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 276/942 (29%), Positives = 451/942 (47%), Gaps = 135/942 (14%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF+   HE++ S SL+P NDP+L++ N+G+   K  F+G+E P+   +   
Sbjct: 8   SQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLANS 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+C+RA    ND++NVG T+RHHT FEMLGNFS G YFK+ AI+  ++LLTK + L++ +
Sbjct: 68  QRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNKDK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYIT+Y++D +AF  W    G++   IIR     NFW +  +GPCGP +EI++D+GE   
Sbjct: 124 LYITIYEDDNDAFNYWVG-QGINPHHIIRCDRKRNFWDLG-SGPCGPSTEIYYDRGEKYD 181

Query: 185 GGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        E +RYIE+WN+VF QF          L + +IDTG  LER A +LQ+
Sbjct: 182 PNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELLRKNIDTGASLERFACILQD 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------------RVIVDHLRSSSF 284
              NYD DL+  +I+  E+ T  KY    +V+H               RVI DHL+   F
Sbjct: 242 VPTNYDTDLYLPIIRTIEKHTNHKY----VVDHYFSKDQSEQDVLRAFRVIADHLKCGVF 297

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            IADG+LP  + R Y++R+++RRA  YA+ L      ++  +  +       +  LI  K
Sbjct: 298 AIADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            ++ + + +E   F KTLD G  + +   +       +  +  FKL +T+G PLD++++ 
Sbjct: 358 EIVIQAITNEANNFTKTLDYGFEIFNEAKTTNN----ITAETIFKLVETYGFPLDLIKE- 412

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L A     +D+  F +  ++ +  ++A++  +G     +     K               
Sbjct: 413 LSAEAKIKLDLDGFEELFKKHQEISKANNGEVGLKKQNENLLKFK--------------T 458

Query: 465 GSKFMKEDRKVLCQKPPI--DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            SKF  +   +  +   I  D  N V  I            E  SG     VF+ TP YA
Sbjct: 459 PSKFFYDKNNIKTKVVAIFDDKFNPVDQI------------EVGSGW---AVFESTPIYA 503

Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +GGQ  D G  +  G + +   +V K      +HH   ++        + L  D   R+
Sbjct: 504 TSGGQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLHH--FKKASFWLNEKVELMHDENWRK 561

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NHS  H+LH  L   +   + Q+G+  +      D  +   +T  +L  IE  +  
Sbjct: 562 LVRKNHSLEHILHATLKNTISETIKQSGAFKSAAKATLDFNYPTRLTDEDLDKIETKMRQ 621

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +IA  +PV    ++ E +    A A    +Y  ++ +RV+ +     G +S  LCGGTHV
Sbjct: 622 VIADKIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIKI-----GDYSVELCGGTHV 676

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLK-------------SL 745
            +T EI   +I +  S+ AG  RIE ++  +   ++L+ +  ++K              L
Sbjct: 677 DNTKEIEECFITNLYSLGAGRWRIEIMSSYETIYNYLVDKQNEIKQEKDHMFNELGNYDL 736

Query: 746 ASFLKVSQG--------------NVVGRVEEIWEEYRKLQLIHAKRKL--------QLNV 783
             +L  S+                 +   E+I EEY+ ++L   K+K         +L +
Sbjct: 737 THYLDFSKKLHSFNLPNSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIKKLAL 796

Query: 784 EDLSCHKIADVNF-------MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           ++L  HKI  + F       +S   SE+ +++   +   + K   + I  L+GI    K 
Sbjct: 797 DNLE-HKIVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKS-DNKINYLIGI----KN 850

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +   +  + L+D+ NA          + G  GGG+ + AQ G
Sbjct: 851 ATYKLNAKLLIDKVNA----------MFGAKGGGKQNFAQGG 882


>gi|312084084|ref|XP_003144129.1| alanyl-tRNA synthetase [Loa loa]
 gi|307760706|gb|EFO19940.1| alanyl-tRNA synthetase [Loa loa]
          Length = 839

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 256/765 (33%), Positives = 388/765 (50%), Gaps = 63/765 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-----PVYQAV 61
           IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  FK +F G +         + V
Sbjct: 27  IRLSFLEYFKEHDHTYVPSSSVIPEDDNSVTFVNAGMNQFKPLFLGAKFTEGKFAALRNV 86

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R GGKHND D+VGR   HHTFFEMLGN+SFGGY K  A + AW+ LT    + 
Sbjct: 87  VNWQKCIRVGGKHNDFDDVGRDLTHHTFFEMLGNYSFGGYSKAEACRYAWNFLTDVLRIP 146

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +         ED E   +W K+ G+  D+++    N NFW MAETGPCGPC+
Sbjct: 147 ADRLYVTYFSGDENLKLKEDHECRDIWIKL-GVPEDRVLGCCFNHNFWEMAETGPCGPCT 205

Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EI +D  G      L  S+      +EIWNLVFMQF +        LP + +D GMG ER
Sbjct: 206 EIHYDLIGNRKAQKLVNSN--NPTVVEIWNLVFMQFTRDMSGRISSLPTLYVDCGMGFER 263

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNN---IVNHRVIVDHLRSSSFLIAD 288
           + +++Q   + YD DLF  L++   + + + +Y G +      +R+I DHLR++  +I+D
Sbjct: 264 LVSIVQGLRSAYDTDLFLPLMEIICKYSKVGRYSGRSGDIDTAYRIIADHLRAACIMISD 323

Query: 289 GILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G+ P +  RGY LRR++RRA     L LG     +  L+P     +   Y  +   + +I
Sbjct: 324 GVEPGSRNRGYHLRRVLRRAALNLTLTLGAERGTLASLVPDFVNHITLLYDSVAACETII 383

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +T+ SE++ F K+ D+G  LL+  ++   +  IL G++A+ L   +GLPL I+Q +   
Sbjct: 384 VKTVMSEEQLFWKSYDKGTKLLEHNIA--SQQHILPGEIAWMLSGNYGLPLAIIQKVCNE 441

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +GL  +D+  F+  L   +   +A          EK+                 +L G K
Sbjct: 442 KGLK-VDVDGFHHCLTNFQKTQKAEEEPWQKVDLEKM-----------------MLSGVK 483

Query: 468 FMKEDRKVLCQKPPI---DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
              +  K  C++  +   +  +   ++V      G+ V    SG+   VV D T F+AE 
Sbjct: 484 ATDDSEKYCCKRIKLGEYEFPSRTGAVVAIFDVNGKSVMALKSGEGGSVVMDSTVFFAEQ 543

Query: 525 GGQLGDTGCA--------IGDGIRLQITDVQ--KKAEGIFVHHAIVERG-ILRTEMSLVL 573
           GGQL D G          +    R  I  V   K+  G  +H   V  G  L   ++LV 
Sbjct: 544 GGQLYDRGILRDSLNVIFMSQKCRNVIFTVNSAKRRNGYIIHTGEVANGQTLEKGLNLVQ 603

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAEL 632
            ID + R  L   H+ATH+LH AL  +  + V Q GS I PD L FD     +  T  ++
Sbjct: 604 IIDPKQRFSLMCGHTATHILHFALEKVFDASVRQMGSFIGPDKLHFDFFVPDEKFTLEKI 663

Query: 633 KSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTK---YNDRVRVVSVEYED-G 686
           + +   VN II  NL V  +  + N   ++    +A   ++   ++   R++++E     
Sbjct: 664 EEVMATVNMIIESNLNVTVKYILQNELGSMHKNFSAFDISQEAAFDGSYRIITIESSQLL 723

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           G      C GTHV +TG+I    I+ + S  A +RRI A+T   A
Sbjct: 724 GQDIIEPCCGTHVCNTGDIGRFVIIGQKSRSANVRRIYAVTNTTA 768


>gi|324507432|gb|ADY43152.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 693

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 245/684 (35%), Positives = 366/684 (53%), Gaps = 56/684 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58
           + +R+ F+ FF    H  + SSS+IP  DPTL+F N+GM  FK IF G   P      + 
Sbjct: 8   NEVRSAFINFFANREHTYVHSSSVIPFEDPTLLFANAGMNQFKPIFLGTVDPSSELGRLR 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +AV T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLTKE 
Sbjct: 68  RAVNT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCNWAWELLTKEL 126

Query: 119 DLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   +LY++ +  DE      D+E  ++W  I GL   +++     DNFW M + GPCG
Sbjct: 127 GIPADQLYVSYFGGDEKAGLAPDDECRQIWLDI-GLPESRVLPFGMKDNFWEMGDVGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSEI FD+ G      L  + +     +EIWNLVFMQ+ ++       LP   ID G+G
Sbjct: 186 PCSEIHFDRVGNRDASALVNADD--PMVVEIWNLVFMQYNREEGGVLRELPMRHIDCGLG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQA----------SEQVTGMKYEGNNIVNHRVIVDHL 279
           LER+  V+Q KT+NYD D F  +  A          S +V     +G ++  +RV+ DH+
Sbjct: 244 LERLVAVMQNKTSNYDTDAFTPIFDAIQASVCVRAYSGKVGAADSDGIDMA-YRVVSDHI 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+    ++DG  P + GRGYVLRRI+RR + YA   LG        L+P +   +G  +P
Sbjct: 303 RTLCVALSDGGRPDSTGRGYVLRRILRRGVRYANEKLGAPPGFFASLVPVVVRLLGDTFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397
           EL +    + + +  E+ +F KTL RG  L    ++ L  + +   GD+A++LYDT+G P
Sbjct: 363 ELRKDPETVMDIINDEEAQFLKTLSRGRSLFQKAVAALESEAKQFPGDIAWRLYDTYGFP 422

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-EKYGATQ 456
           +D+ Q ++       +D+ +F Q         R  ++ + S    K   + + + +G  +
Sbjct: 423 VDLTQ-LMAEEKQLSVDMDAFEQ--------CRQKAVEMSSAGANKFRDTAELDVHGIAK 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI-----VKAIVQQGEIVEEAVSGQKV 511
                +       K D   +    P D+T   S       V A++++G  V+   SG K 
Sbjct: 474 LKKDGVPSTDDSPKYDYSAVG---PNDITAKYSFAKCEGQVLALLKEGTFVDSLYSGDKG 530

Query: 512 EVVFDQTPFYAEAGGQLGDTGC--AIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            V+ D+T FYAE GGQ+ DTG    IGD G   ++++VQ +  G  V    VE G +   
Sbjct: 531 AVILDRTNFYAEQGGQIYDTGVLTKIGDEGAEFEVSNVQMRG-GYVVLVGSVE-GNISIG 588

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             L+  ID + R  +  NH+ TH+L+ AL  +LG  V Q GS + PD +RFD +    +T
Sbjct: 589 DRLLQAIDEERRSLIMKNHTGTHVLNFALRRVLGD-VEQKGSLVAPDKMRFDFSAKHALT 647

Query: 629 SAELKSIEDNVNDIIAQNLPVVTR 652
           SA+++  E+    +I  +  V  +
Sbjct: 648 SAQVREAEELAQGMIETHAAVFAK 671


>gi|73973034|ref|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase like [Canis
           familiaris]
          Length = 985

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 261/816 (31%), Positives = 408/816 (50%), Gaps = 103/816 (12%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
           +  +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P    
Sbjct: 37  AQATAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEM 96

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114
             ++ V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LL
Sbjct: 97  AGFRRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 156

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+ + + + RL+++ +        D D E+  +W  + G+ A  ++     +NFW M +T
Sbjct: 157 TQVYGIPKDRLWVSYFGGDPKAGLDPDLESRDIWLNL-GVHASHVLSFGPEENFWEMGDT 215

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPC+EI +D    +  G P       + +E+WNLVF+Q  ++       LP+  +DT
Sbjct: 216 GPCGPCTEIHYDLAGRV--GAP-------QLVELWNLVFIQHNRETDGSLQPLPQRHVDT 266

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVD 277
           GMGLER+  VLQ   + YD DLF  L++A  Q  G            +G   + +RV+ D
Sbjct: 267 GMGLERLVAVLQGTPSTYDTDLFSPLLKAIHQGCGAPPYLGQVGAADKGRTDMAYRVVAD 326

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336
           H+R+ S  IADG+ P   G   VLRRI+RRA+ ++  +    P  +  L+P +   +G  
Sbjct: 327 HIRTLSVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLQAPPGFLGSLVPVVVEILGDT 386

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTH 394
           YPEL +    I   +  E+  F  +L RG  ++D  L  LG  E+   +VA+   L    
Sbjct: 387 YPELQKHSAQIASLVSEEEAAFLASLQRGRRIIDQTLRCLGPSELFPAEVAWSLSLSGNL 446

Query: 395 GLPLDIMQDILCARGL----AGIDIISFNQA---------LEEQRSRARAHSLG----LG 437
           GLPLD+++ +L  +G+    AG+  ++  +A         ++ Q  +   H+LG     G
Sbjct: 447 GLPLDLVELMLEEKGVQLDSAGLARLAQEEAKLRSRQAEPVQRQGLQLNVHALGELQRRG 506

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
              T+    S K  Y      GY+               C+          + +++  ++
Sbjct: 507 VPPTDD---SPKYNYSLRPSGGYEF------------NPCE----------AQVLQLYLE 541

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK--AEGIFV 555
            G  V     GQ   ++ D+T FYAE GGQ  D G  +  G    +  V +     G  +
Sbjct: 542 DGTAVASVGKGQHCGLLLDKTNFYAEQGGQASDRGYLVRVGQEDVLFPVARAQICGGFIL 601

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H A+   G L+    + L +D   R      H+ATHLL+ AL   LG    Q GS + P+
Sbjct: 602 HEAVAPEG-LKVGDQVQLHVDEAWRLGCMEKHTATHLLNWALRQALGPGTEQRGSHLNPE 660

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFDV    P+T  +L+++E  V + + Q+  V       E+   +  A + G +  D 
Sbjct: 661 RLRFDVATQAPLTPEQLQAVEGTVQEAVGQDEAVYM-----EEVALAHTAHVPGLRSLDE 715

Query: 676 V---------------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           V               R +    +     S  LC GTH+  TG +  L I+ E  +  G 
Sbjct: 716 VYPDPVRVVSVGVPVARALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGERQLTKGT 775

Query: 721 RRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGN 755
            R+ A+TG++A ++  +GQ    +  A+  ++S+G+
Sbjct: 776 VRLLAVTGEQAQQAREVGQSLAQEVEAATERLSRGS 811


>gi|294155487|ref|YP_003559871.1| alanine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600170|gb|ADE19666.1| alanine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 876

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/755 (32%), Positives = 401/755 (53%), Gaps = 65/755 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L FF+K  H ++P+ SL+P ND +L++ NSG+   K+ F+G++ P  + +T  QK
Sbjct: 6   IRQDWLNFFEKKNHLIVPTKSLVPVNDNSLLWINSGVATLKDYFSGKKIPPSKRLTNSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+ A + L     LD+ RLY
Sbjct: 66  AIRT----NDIENVGITARHHTLFEMLGNFSIGDYFKKEAIEFAAEYLLTILKLDKNRLY 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG- 185
            T + ED E  +LW    G   + +I  T + NFW +  +GPCGP +EIF+D+G+     
Sbjct: 122 FTYFHEDLETKQLWIN-CGFDPEHMIPGTRDTNFWEVG-SGPCGPNTEIFYDRGQKYDSR 179

Query: 186 --GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
              L  +  E +RY+EIWN+VF  +    +     L + +IDTG GLER+ +V+Q+   N
Sbjct: 180 GIELLKNDIENDRYVEIWNIVFSTYNSDGEGNYTELKQKNIDTGAGLERIVSVMQDAPTN 239

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI---------VN--HRVIVDHLRSSSFLIADGILP 292
           +D DLF  +I   E+ T  +Y+ NN          +N   ++I DH+R+ S  IADG   
Sbjct: 240 FDTDLFLPIIHEIEKYTSYRYDINNYFVKNKDQVEINSCFQIIADHIRTVSNAIADGAKI 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGY++RR++RR +  +  L  T+ + ++ L  +  +      ++++    +E+ ++
Sbjct: 300 SNIGRGYIIRRLIRRCVYKSMKLKVTDSIFLYKLVKVVKQSLPFEYDVVK----VEKAIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E++ F KT+++G +LL+  +S      I +G  AFKL++T+G P+++  +IL  + +  
Sbjct: 356 AEEQLFAKTIEKGKILLEKNISK--GSSIFSGKTAFKLFETYGFPIELTMEILADQKV-N 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFMKE 471
           ID+  F +A +E    ++       +   +K+  SL   K     F+GY           
Sbjct: 413 IDMNEFEKAKQEHAEASKTKK----TAGMDKVINSLTLLKSKIDIFVGYTD--------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        T   S I+K      EI E   S     +V D+TPFYA +GGQ  D 
Sbjct: 460 -------------TKTTSKILKLFNSNKEIKE---SNDTAFLVLDKTPFYATSGGQRHDK 503

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + +  +++I DV K   G  +H   V +G +     +   +D   R  L  NHS TH
Sbjct: 504 GYILQNKNKIEIIDVFKDKHGNHIH---VIKGKINKNDPVECFVDETIRLGLERNHSGTH 560

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL+ AL  +LG+H+ Q GS    + L FD+      +  ++K IE+ VN  I ++     
Sbjct: 561 LLYCALRNVLGNHIQQLGSDNNEERLTFDLPADNKPSDEKIKEIENLVNQYIKEDATRNY 620

Query: 652 RIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             M+ E A    A   L   +Y D+  V  V++++    ++ LCGGTH+S+T ++    I
Sbjct: 621 LQMSIEKAKEMNAILTLEEGEYMDKNNVRIVKFDNI---TADLCGGTHISNTAKLESFKI 677

Query: 711 VSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS 744
           V  S   AGI RI+A+T  +    +L  + +K+K+
Sbjct: 678 VEFSKKAAGIFRIKALTSNKLVNDYLTNEIKKVKN 712


>gi|83316024|ref|XP_731046.1| alanyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490961|gb|EAA22611.1| alanyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 1218

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 258/838 (30%), Positives = 418/838 (49%), Gaps = 124/838 (14%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
            +R  F+ +F+   H ++ S+S+IP ND TL+FTN+GM  FK IF G      +    +  
Sbjct: 195  VRNNFINYFKNKNHTVVDSASVIPYNDNTLLFTNAGMNQFKKIFLGNVDKNSDLGKLKRC 254

Query: 62   TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
               QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I+ AWDLLT  + ++
Sbjct: 255  VDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIEYAWDLLTNVYKIN 314

Query: 122  QRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +  D+         EA K+W K   L   +I+     DNFW MAETGPCGPC
Sbjct: 315  PDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDEKRILPFGMKDNFWEMAETGPCGPC 372

Query: 173  SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            SEI +D+     G    S   +++    +EIWN+VFMQ+ +   +    LP   IDTGMG
Sbjct: 373  SEIHYDR----IGNRDASDLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPSPCIDTGMG 428

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVN----------HRVIV 276
            LER+ ++LQ   +NYD DLF  + +  +++       Y+G   +N          +RVI 
Sbjct: 429  LERITSILQNVQSNYDTDLFTPIFKQIKEIFNNSIPSYQGK--INEEDPDKIDYAYRVIS 486

Query: 277  DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEM 333
            DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   +  ++    L+ ++C  +
Sbjct: 487  DHIRCATIAISDGCIPSNEGRNYVIRRIIRRAVRVGKQVFNIKSNVLWFYKLVDSVCKIL 546

Query: 334  GSAYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDV 386
            G+ + +L   + +  I+  +  E+  F KTL++G+   + ++          + + +G  
Sbjct: 547  GNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKIIKKCHQNPSNSNNLFSGKD 606

Query: 387  AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG---TTEK 443
            AF LY ++G P+D+++ I+C      +++  FN   ++ +  +  ++  +        EK
Sbjct: 607  AFDLYTSYGFPIDLIE-IMCEEKNVKLNMEEFNTLFKKHQLISDTNNFKINKVIDLPVEK 665

Query: 444  IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI-----VKAIVQQ 498
                +K KY     I Y     +   ++ +     K  + L + V  I     +  +V  
Sbjct: 666  A-HEIKCKYNVLPTIDYHKYNWNNTFEDIKSKEENKNNLRLKSSVQIIYDGNFLDELVYT 724

Query: 499  GEIVEEAVSGQKVE-------VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                +E  S +K E       ++  +T FY E GGQ+ DTG    + ++ Q+ +VQK  +
Sbjct: 725  DNETKEPSSCEKTENEQKKYALILKETNFYYENGGQIYDTGFIQNESMKFQVLNVQKMND 784

Query: 552  GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--- 608
             I +H  ++  G ++    +   +D++ R+ ++ NH+ATHLL+ AL  +L   ++Q    
Sbjct: 785  YI-LHIGVLLSGSIKKNDVIETVVDFERRKLIACNHTATHLLNFALRKVLEDQMNQTKNK 843

Query: 609  -------------------------------------------GSCITPDGLRFDVTHSK 625
                                                       GS +  + LRFD +  +
Sbjct: 844  CDNKDENKKGSLEDSSAIKNKLEGNSSCNNNSNGSSIFNCEQKGSLVDDEKLRFDFSFIQ 903

Query: 626  PITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVEYE 684
             I    L  IE  +N+I+ + L V  + M+  E     G  A+    Y+D+V VV +   
Sbjct: 904  NINMDVLNKIETEINNIVKEELDVSIKTMDLTESKKIKGIRAIFEEDYSDKVNVVFISKN 963

Query: 685  DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               V ++            LCGGTH+ +T  I    I SE SI  GI RI A+T ++A
Sbjct: 964  ADNVLNNLDINYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGIHRINAVTNKKA 1021


>gi|71894391|ref|YP_278499.1| alanyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|83305851|sp|Q4A633|SYA_MYCS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71851179|gb|AAZ43788.1| alanyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 878

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 274/909 (30%), Positives = 453/909 (49%), Gaps = 99/909 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  +L+FF+   H ++P  SLIP ND +L++ NSG+   K+ F+G++ P  + + 
Sbjct: 2   NSKEIRKAWLDFFESKNHFIVPPKSLIPVNDNSLLWINSGVATLKDYFSGKKNPPSKRMA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T RHHTFFEMLGNFS GGYFK+ AI+ A + +     LD+
Sbjct: 62  NSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGGYFKKEAIEFATEFVLDVLKLDR 117

Query: 123 RRLYITVYDEDEEAFKLWKKIS-GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            RLY T + +D E   LW  IS G   +++I      NFW + + GPCGP +EIF+D+GE
Sbjct: 118 SRLYFTYFHDDLETKNLW--ISQGFKEEQLIPGDRKTNFWEVGK-GPCGPNTEIFYDRGE 174

Query: 182 CIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +RYIEIWN+VF  +    +     L + +IDTG GLER+ ++LQ
Sbjct: 175 KYDQRGIELLKNDIENDRYIEIWNIVFSTYNSDGEGNYTELNQKNIDTGAGLERIVSILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VN--HRVIVDHLRSSSFLIA 287
           +   N+D DLF  +I   E+ T  +Y+  N          +N   ++I DH+R+    IA
Sbjct: 235 DAPTNFDTDLFLPIIHEIEKYTSYRYKIENYFIKDKAQKEINSYFKIIADHMRTVVNAIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTE-PLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG  P+N  RGY+LRR++RR+   A  L  T+ P +  L+  +   +   Y     A   
Sbjct: 295 DGEKPSNLSRGYILRRLIRRSYYKAIQLKITKSPFLYKLVDVIKASLPFEYDSKKVA--- 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             E ++ E+  F +T+ +G  +L+  +S     ++  GD+A+KL++T+G P ++ ++IL 
Sbjct: 352 --EVIKEEEVLFSQTISKGKEILEKFISENSSKDLFPGDLAYKLHETYGFPFELTEEILL 409

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
            + +  I+   FN A E+    +R     G+            KE     +FIGY     
Sbjct: 410 QKDIK-INKEEFNLAKEKHIEASRNQKETGMDKVINSLALIKAKE----DEFIGY----- 459

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                            + TN VS I+  + ++ E+ E   +     ++ D+TPFYA +G
Sbjct: 460 -----------------EHTNSVSKILHLLNEENELSENDGTSY---LILDKTPFYATSG 499

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    +G++L+I +V K   G  VH  +   G L     +   +D + RR L  
Sbjct: 500 GQKHDRGYIEQNGVKLEILNVFKDKFGNHVHKVV---GKLSKNYPVTCQVDLKIRRGLER 556

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS THL+  AL  + G+ + Q GS    D L FD       T+ E+  +E+ V   I +
Sbjct: 557 NHSGTHLMFCALRNVFGNQIKQLGSDNNEDRLTFDAPFDSKPTNEEILKVENLVKSYIQK 616

Query: 646 NLPVVTRIMNREDAIASGAAALL-GTKYND--RVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +     IM  + A    A   L   +Y D  ++R+V+      G+ ++ LCGGTH+ +T
Sbjct: 617 EVDRQYLIMGIDQAKEINAIMTLEEAEYMDSSKLRIVNF----NGI-TADLCGGTHLENT 671

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDE-----------KLKSLASFLK 750
             +    I S     AG+ RI AI+ +     +L  Q +           KLK +    K
Sbjct: 672 KLLEDFKITSVEKKAAGVYRIRAISSKETIEKYLENQKQELMQELLVLVKKLKDMQFDFK 731

Query: 751 V---------SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           V         SQ   +  +  +  E  K ++    +K+ +++ ++    I + N++ ++ 
Sbjct: 732 VSLDESLELSSQIQEIKNLTNLASEAIKNKIKENSKKISIDLNEIELENI-NGNYL-YLN 789

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            E+  +E+K++   +++K  + +++L  ISK +  S +   ++    ++N++++ +  A 
Sbjct: 790 DEISKEEIKNLSGVIREKFPNALVIL--ISKGEAQSAISFASK----KYNSINVLKELAN 843

Query: 862 VLGGGGGGG 870
                GGG 
Sbjct: 844 HFELRGGGN 852


>gi|205374235|ref|ZP_03227034.1| alanyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 673

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 258/704 (36%), Positives = 394/704 (55%), Gaps = 43/704 (6%)

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           +F QF          LPK +IDTGMGLERMA V+QE   N++ DLF  +I+  E ++G+ 
Sbjct: 1   MFSQFNHNPDHTYTPLPKKNIDTGMGLERMACVVQEVPTNFETDLFMPIIKEVEGISGVT 60

Query: 264 YEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           Y  ++    + +VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ +A+ +G  +P 
Sbjct: 61  YHPHSEEATSFKVIADHIRTVSFAIGDGALPSNEGRGYVLRRLLRRAVRFAKAIGINDPF 120

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-- 379
           M  L+P +   M   YP + +    I++ +++E++RF +TL+ GL +L  V+ +   +  
Sbjct: 121 MYKLVPVVAEIMVDFYPVVKEKIEFIQKVVKNEEDRFHETLNEGLAILSTVIENAKSEGS 180

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
            ++ G   F+LYDT+G P+++ ++     G+  +D   F   +E+QR RAR     +GS 
Sbjct: 181 TVIPGSDVFRLYDTYGFPVELTEEYAEEAGMT-VDEEGFRHEMEQQRERARNARQDVGSM 239

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             +     L E    + FIGY+ +                        V ++V  ++ + 
Sbjct: 240 KVQ--GGVLGEIETNSTFIGYNQM-----------------------SVDTVVTDLIVEE 274

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
               EA  G++++ V  +TPFYAE+GGQ+ D G    +  ++Q+ DV+K   G  VH   
Sbjct: 275 AFSTEANEGKEIQFVLKETPFYAESGGQIADGGIVESENGKIQVLDVKKAPNGQHVHRGR 334

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G ++   S+  TI+   R+Q+  NH+ATHLLH AL  +LG HV+Q GS +  D LRF
Sbjct: 335 VVAGTIKVADSVKATINELARKQIVKNHTATHLLHRALKDVLGEHVNQAGSLVQTDRLRF 394

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +T  EL+ +E +VN+ I + + V  +  + E+A A GA AL G KY D VRVV
Sbjct: 395 DFSHFGQVTKEELEQVERHVNEQIWKGISVDIQSKSIEEAKAMGAMALFGEKYGDVVRVV 454

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           SV     G +S  LCGG HV +T  I L  I SES I AG RRIEA+TG+ A   L  + 
Sbjct: 455 SV-----GDYSIELCGGCHVENTASIGLFKIASESGIGAGTRRIEAVTGEGAYRLLNEKV 509

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVED----LSCHKIADV 794
             L+  +  LK    +++ R++ +  E + +Q  +     +L N+E      S   I  V
Sbjct: 510 MMLEEASDRLKTKPDSLLTRIDGLLGELKDVQRENESLNAKLANIEAGSLIDSVESIDGV 569

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAV 853
           N +S  +  VD   L+S+ D L+ KI SG+I+L G  +  K +++  VT+DLLD+ ++A 
Sbjct: 570 NVLSANVQGVDMNSLRSMADDLKTKIHSGVIVL-GSVQGDKVNIIAAVTKDLLDKGYHAG 628

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            L +  A    GGGGGGRP MAQ+GG N  + D A+  V  ++K
Sbjct: 629 KLVKEVASRC-GGGGGGRPDMAQAGGKNPAQLDDALKFVYEWVK 671


>gi|94971009|ref|YP_593057.1| alanyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|205829975|sp|Q1IJG7|SYA_ACIBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94553059|gb|ABF42983.1| alanyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 1098

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/403 (47%), Positives = 260/403 (64%), Gaps = 27/403 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S +R  FL+FF   GH+ + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 14  MMTGSQVRRRFLDFFISKGHKEVHSSSLVPANDPTLLFTNAGMNQFKDVFLGVEKRDYNR 73

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118
            TT QKCVRAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFK+ AI  AW+L+T    +
Sbjct: 74  ATTSQKCVRAGGKHNDLENVGFTNRHHTFFEMLGNFSFGDYFKKDAIAYAWELVTSPDWY 133

Query: 119 DLDQRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + Q +LY T++        D+EA++LW  + G+  +++  +   DNFW+M +TGPCGPC
Sbjct: 134 GMQQDKLYATIFKGENGVPRDDEAYQLWLDV-GVPKERVFEMGMKDNFWAMGDTGPCGPC 192

Query: 173 SEIFFDQG---------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           SE+ +D G         EC  G      E G RY+EIWNLVFMQF++        LPK S
Sbjct: 193 SELHYDMGVASSDKKNPECAAGECKFPCECG-RYVEIWNLVFMQFDRDASGTLNPLPKPS 251

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--------KYEGNNIVNHRVI 275
           IDTG GLER+  V+Q   +NYD DLF  LI+ + ++T +        + +  +  + RVI
Sbjct: 252 IDTGAGLERVTAVMQGVVSNYDTDLFTPLIKRAAELTDVDEKREEAKESQSKSAASLRVI 311

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
            DH R+++FLI+DG++PANEGRGYVLR+I+RR + + RLLG  +P +  ++ A+   M  
Sbjct: 312 ADHSRAATFLISDGVIPANEGRGYVLRKIIRRGIRHGRLLGQNKPFLHDMVYAVRDLMQD 371

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           AYPEL +    + +T+ +E+ RF  TLD GL  LD  L+ L +
Sbjct: 372 AYPELKETADRVAKTVLAEETRFANTLDIGLKKLDEDLASLAE 414



 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 179/570 (31%), Positives = 288/570 (50%), Gaps = 36/570 (6%)

Query: 336  AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            A  +L +   ++ E +R   E FG  L+  ++  + +   L    + +GD AFKLYDT G
Sbjct: 537  AEKKLAENPEMLAEQVR---EVFGPALEEKVI--NELRGKLQSRPVYSGDKAFKLYDTFG 591

Query: 396  LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            LPLD M D    +G+   D   F+ A+E QR  ARA   G    +   I+  L E+ G  
Sbjct: 592  LPLDFMVDAARDQGIE-FDQAGFDAAMESQRETARASWKGGSKLSASPIYRELAEELGTK 650

Query: 456  QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
             + G   L G   M   + +       +      + V AI+  G  V +   G   E+V 
Sbjct: 651  PYPGQ--LAGGHPMITPQSIFVGYTSTEFKG---ATVLAIISNGASVAQLAPGDVAEMVL 705

Query: 516  DQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSL 571
            D TPFY+E+GGQ+GDTG    + G+ +  ++  VQ   +G+  H     + I +  +++ 
Sbjct: 706  DYTPFYSESGGQIGDTGWLYDSTGNTVVAEVETVQSPVQGVRAHKVTARQNIAVGDKLNA 765

Query: 572  VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            V+  D   RR    NH+ THLLH AL  +LG HV Q GS + P  LRFD +H   +   E
Sbjct: 766  VVNADV--RRATMRNHTGTHLLHAALREVLGKHVKQAGSLVDPAKLRFDFSHFTGVADEE 823

Query: 632  LKSIEDNVNDIIAQN--LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            L+ IED VN  + +N  + V+  +          A AL G KY DRVRV+ +     G  
Sbjct: 824  LQDIEDIVNKEVLKNDRVEVIENVPIDVAVNEYKAMALFGEKYGDRVRVIKI-----GDF 878

Query: 690  SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            S+ LCGGTH  +TGEI L+ ++ E S+ +G+RR+EA+TG+ +  H     E    +++ +
Sbjct: 879  STELCGGTHTLATGEIGLIKVLHEGSVSSGVRRLEAVTGENSVRHFRKDHELEGVVSTIV 938

Query: 750  KVSQG---------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-IADVNFMSH 799
            + S+G          +  R EEI +  ++L+    K             + +  +  ++ 
Sbjct: 939  RPSEGLSPAQALKFELDRREEEIKKLRKELEQSRMKSASSAVSSATESAREVKGIKVLAT 998

Query: 800  IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
                +D  ++++++D L+ K+ SG+I+L G  ++ K ++++ VT+DL  +  A  +    
Sbjct: 999  RADNIDRNQMRTLIDNLRSKLGSGVIVL-GSVQDGKVALIVGVTKDLTSKIQAGKIIAQV 1057

Query: 860  AKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            AK + GG GGGRP MA++GG +    D A+
Sbjct: 1058 AKHV-GGSGGGRPDMAEAGGKDPAALDGAL 1086


>gi|187469665|gb|AAI66719.1| Aars2 protein [Rattus norvegicus]
          Length = 746

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/677 (34%), Positives = 366/677 (54%), Gaps = 54/677 (7%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 34  AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 93

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFK+ A  +AW+LLT+ 
Sbjct: 94  RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 153

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 154 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 212

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    + GG+ G  +     +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 213 GPCTEIHYD----LAGGM-GPPQ----LVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 263

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q           G   EG     +RV+ DH+R
Sbjct: 264 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 323

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +    P  + +L+P +   +G+AYPE
Sbjct: 324 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 383

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+   L    G+P
Sbjct: 384 LQKNSVKIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 443

Query: 398 LDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           LD++Q +L  +G+  +D     Q A +E + RA+        G    +  +L+E +    
Sbjct: 444 LDLVQLMLEEKGVK-LDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDV-HALEELH---- 497

Query: 457 FIGYDLLRGSKFMKEDRKV-LCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEV 513
                  +G     +  K     +P  D   G+  + +++   + G  V     GQ+  +
Sbjct: 498 ------RQGIPTTDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQRCGL 551

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  D G  I  G +  +  V + +  G F+ H  +    L+    + 
Sbjct: 552 LLDRTNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQVGDRVQ 611

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D   R    + H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+T+ +L
Sbjct: 612 LYVDKAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPLTTEQL 671

Query: 633 KSIEDNVNDIIAQNLPV 649
           +++E  V + + Q+ PV
Sbjct: 672 RTVESYVQEAVGQDKPV 688


>gi|302666339|ref|XP_003024770.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517]
 gi|291188840|gb|EFE44159.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517]
          Length = 925

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 307/964 (31%), Positives = 465/964 (48%), Gaps = 136/964 (14%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFL++F+KNGH            DP     NS     K                   
Sbjct: 23  VRDTFLDYFKKNGHTF-------GTVDP-----NSDFAQLK------------------- 51

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             RA     DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY
Sbjct: 52  --RAHNSQKDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 109

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCSEI +D
Sbjct: 110 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 168

Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +     GG   +   +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+ +
Sbjct: 169 R----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVS 224

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLI 286
           +LQ K++NYD D+F  L  A + +TG + Y G       + I   +RV+ DHLR+ +F I
Sbjct: 225 ILQNKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAI 284

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344
            DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ + +
Sbjct: 285 TDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKRKQ 344

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIM 401
             + E L  E+  F KTLDRG    +         G  ++   DV ++LYDT G P+D+ 
Sbjct: 345 TDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLPGADV-WRLYDTFGFPVDLT 403

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-----EKYGATQ 456
           + +   R L  ID   F    EE R +A+  S G     ++ +  ++      EK G  +
Sbjct: 404 RLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTLEKNGVPK 458

Query: 457 FIGYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
               D   G   +  + K +C  K  ID T  +                  + +++ ++ 
Sbjct: 459 -TDDDAKFGKGNIVANIKAICHGKDVIDSTKDIP-----------------ANEQIGIIL 500

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S++  
Sbjct: 501 DKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNFSVNDSVIAE 559

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ ++L+ 
Sbjct: 560 YDELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEK 619

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH---- 689
           IE    D I QN  V ++ +    A   +G  A+ G  Y D VRVVSV  E   +     
Sbjct: 620 IEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVK 679

Query: 690 -------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----------- 731
                  S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A           
Sbjct: 680 DPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFG 739

Query: 732 ----RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               R   M     +D ++KSL   L       V +     +  +I ++    Q    K 
Sbjct: 740 ERLNRFEKMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKA 799

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGISKEKK 835
           +++  ++ +S +   + +  S +I    +   K++ ++L   K   SG  + V  +   K
Sbjct: 800 EVKTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAADASK 859

Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +    VT DL  +  +A + A   + ++GG  GG  P +A   G   NK D+A+     
Sbjct: 860 VAHGCYVTPDLTTKGASANEWASAVSSIIGGKAGGKAP-VAIGNGTEVNKVDEALDEATK 918

Query: 895 FLKK 898
           +L+K
Sbjct: 919 YLEK 922


>gi|304373323|ref|YP_003856532.1| alanyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309514|gb|ADM21994.1| alanyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 887

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 249/738 (33%), Positives = 387/738 (52%), Gaps = 65/738 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF+   H  + S SL+P NDP+L++ NSG+   K+ F+G++ P  + +T  QK
Sbjct: 10  IRQLWLDFFKSKNHLEVESKSLVPENDPSLLWINSGVATLKDYFSGKKVPPSKRLTNSQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ LTK    D  +LY
Sbjct: 70  SLRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEYAFEFLTKVLKFDVNKLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG- 185
            T + ED +    W K+ G+  + +I      NFW M   GPCGPC+EIF+D+G      
Sbjct: 126 FTYFLEDLDTKDYWLKL-GIKEEHLIAGNRKTNFWDMG-IGPCGPCTEIFYDRGSKYDSR 183

Query: 186 GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           G+    E  E +R+IEIWN+VF QF    +     L   +IDTG GLER+ ++LQ+   N
Sbjct: 184 GIELLKEDIENDRFIEIWNIVFSQFNNDGENNYTPLISKNIDTGAGLERIVSILQDGPTN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDHLRSSSFLIADGILP 292
           +D DLF  +I   E++T  +Y+  N               ++I DH+R+    I DG+ P
Sbjct: 244 FDTDLFLPIIHQIEKMTSFRYDIENYFKKEEKQSKINSYFKIIADHIRAVVNAINDGVEP 303

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N  RGY++RR++RRA    + LG  E  +  L+  +   +   Y   +     + E ++
Sbjct: 304 SNTFRGYIIRRLIRRAYRTGKKLGIKEAFLYKLVNVVKNTL--IYDIDVDR---VSEVIK 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+  F KT++ G +LL   +    K    +  VAFKL++T G P+++ Q+IL  + +  
Sbjct: 359 KEELLFEKTIENGEILLQKEIEKNNKQ--FDFAVAFKLFETFGFPIELTQEILAEKNIE- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F +  +E+ ++       LG   T      +K++   +QFIGY  L+        
Sbjct: 416 LDMDQF-KIYQERHAQLSMGEKKLGMKKTVNSLALVKDQ--ISQFIGYSHLKAK------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           + IV  +  + + +E++   Q+  V+FDQTPFYA AGGQ  D G
Sbjct: 467 ----------------AKIV-FLADEEQEIEQSSEHQESYVIFDQTPFYATAGGQKHDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +  +++I  V K     F++H  V  G+L     + L +D  NRR L  NHS+THL
Sbjct: 510 WIVQNNNKIKIKQVFKDK---FLNHVHVLEGVLDKNQEVFLEVDEVNRRNLERNHSSTHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP---V 649
           L  +L    G+ + Q GS    + L FD    K  T  EL  I++ VN  I +++    +
Sbjct: 567 LFKSLREQYGAQIKQLGSDNNEERLTFDFPLDKKPTQKELNQIQNRVNSYIKEDVERHYL 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T I  +E    +    L   +Y D   V  V+++  G+ ++ LCGGTH++ T  I    
Sbjct: 627 ETSI--KEAEKLNAVMTLEEAEYMDPKNVRLVQFK--GI-TTDLCGGTHIAKTSLIERFK 681

Query: 710 IVSESSIRAGIRRIEAIT 727
           IVS  +  +G+ RI AIT
Sbjct: 682 IVSCQNKGSGVFRIRAIT 699


>gi|330723800|gb|AEC46170.1| alanyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 887

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/738 (33%), Positives = 387/738 (52%), Gaps = 65/738 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L+FF+   H  + S SL+P NDP+L++ NSG+   K+ F+G++ P  + +T  QK
Sbjct: 10  IRQLWLDFFKSKNHLEVESKSLVPENDPSLLWINSGVATLKDYFSGKKVPPSKRLTNSQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ LTK    D  +LY
Sbjct: 70  SLRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEYAFEFLTKVLKFDVNKLY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG- 185
            T + ED +    W K+ G+  + +I      NFW M   GPCGPC+EIF+D+G      
Sbjct: 126 FTYFLEDLDTKDYWLKL-GIKEEHLIAGNRKTNFWDMG-IGPCGPCTEIFYDRGSKYDSR 183

Query: 186 GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           G+    E  E +R+IEIWN+VF QF    +     L   +IDTG GLER+ ++LQ+   N
Sbjct: 184 GIELLKEDIENDRFIEIWNIVFSQFNNDGENNYTPLISKNIDTGAGLERIVSILQDGPTN 243

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDHLRSSSFLIADGILP 292
           +D DLF  +I   E++T  +Y+  N               ++I DH+R+    I DG+ P
Sbjct: 244 FDTDLFLPIIHQIEKMTSFRYDIENYFKKEEKQSKINSYFKIIADHIRAVVNAINDGVEP 303

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N  RGY++RR++RRA    + LG  E  +  L+  +   +   Y   +     + E ++
Sbjct: 304 SNTFRGYIIRRLIRRAYRTGKKLGIKEAFLYKLVNVVKNTL--IYDIDVDR---VSEVIK 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+  F KT++ G +LL   +    K    +  VAFKL++T G P+++ Q+IL  + +  
Sbjct: 359 KEELLFEKTIENGEILLQKEIEKNNKQ--FDFAVAFKLFETFGFPIELTQEILAEKNIE- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F +  +E+ ++       LG   T      +K++   +QFIGY  L+        
Sbjct: 416 LDMDQF-KIYQERHAQLSMGEKELGMKKTVNSLALVKDQ--ISQFIGYSHLKAK------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           + IV  +  + + +E++   Q+  V+FDQTPFYA AGGQ  D G
Sbjct: 467 ----------------AKIV-FLADEEQEIEQSSEHQESYVIFDQTPFYATAGGQKHDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +  +++I  V K     F++H  +  G+L     + L +D  NRR L  NHS+THL
Sbjct: 510 WIVQNNNKIKIKQVFKDK---FLNHVHILEGVLDKNQEVFLEVDEVNRRNLERNHSSTHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP---V 649
           L  +L    G+ + Q GS    + L FD    K  T  EL  I++ VN  I +++    +
Sbjct: 567 LFKSLREQYGAQIKQLGSDNNEERLTFDFPLDKKPTQKELNQIQNRVNSYIKEDVERHYL 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T I  +E    +    L   +Y D   V  V+++  G+ ++ LCGGTH++ T  I    
Sbjct: 627 ETSI--KEAEKLNAVMTLEEAEYMDPKNVRLVQFK--GI-TTDLCGGTHIAKTSLIERFK 681

Query: 710 IVSESSIRAGIRRIEAIT 727
           IVS  +  +G+ RI AIT
Sbjct: 682 IVSCQNKGSGVFRIRAIT 699


>gi|47459274|ref|YP_016136.1| alanyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|81614196|sp|Q6KHK5|SYA_MYCMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|47458603|gb|AAT27925.1| alanyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 905

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 289/929 (31%), Positives = 467/929 (50%), Gaps = 122/929 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L FF+  GH ++PS SLIP  D +L++ NSG+   K+ F+G++ P  + +T  QK
Sbjct: 6   IRNKWLNFFESKGHLIIPSKSLIPIKDDSLLWINSGVATLKDFFSGKKIPPSKRLTNSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI   ++ +      D+ +++
Sbjct: 66  SIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAINFGFEFIFDVLKFDREKIF 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG- 185
            T + ED E  ++ K ++ +   +II+ +   NFW M   GPCGP  EIF+D+G      
Sbjct: 122 FTYFSEDLETLEILKSLN-VPDSQIIKGSRKTNFWDMG-NGPCGPNLEIFYDRGPKYSNR 179

Query: 186 --GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
              L  +  E +RYIEIWN+VF QF         +L + +IDTG GLER+A +LQ+   N
Sbjct: 180 GIELLKNDIENDRYIEIWNIVFSQFNNDGNGNYELLKQKNIDTGAGLERLACILQDTPTN 239

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIADGILP 292
           ++ DLF  +I+  E+++  KY+ +N            +N ++I DHLR++   I DG  P
Sbjct: 240 FETDLFLPIIKEIEKLSIYKYKIDNYFLKDKIQEKINLNFKIISDHLRTAVNAINDGAKP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGY++RR++RRA      LG      +H +  +  +  S   ++   K  + + ++
Sbjct: 300 SNNGRGYIIRRLIRRAYRSGIFLGIKGKSFLHKMTQIVRD--SLIYDIDVEK--VSKIIK 355

Query: 353 SEDERFGKTLDRGLVLL-DGVLSHLGKDE-------------------ILNGDVAFKLYD 392
            E+E F KT+  G+ LL + + S   KD                      +  +AF+L+ 
Sbjct: 356 KEEEMFSKTISEGINLLKEKIKSKFPKDNSIDIENKSQVAKYFKENNLTFDFSIAFELFS 415

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL---K 449
           T G P++I+++IL       +DI +  + LEE  +++R+ +    S   +K+  SL   K
Sbjct: 416 TFGFPVEIIKEILEDEYEIELDISNLPKYLEEHANKSRSEN----SSAMQKVINSLELVK 471

Query: 450 EKYGATQFIGYDLLR-GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           EK   ++F+GY  L+  SK +     +L +   I  TN  + I   I+            
Sbjct: 472 EK--VSEFVGYSTLKTKSKIL----YLLNETEEIHFTNSENEISYLIL------------ 513

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
                  D+TPFYA AGGQ  D G  I D  R+++ +V K      VH   V+  IL++E
Sbjct: 514 -------DKTPFYATAGGQRHDKGLLIQDKNRIEVLEVFKDKHLNNVHK--VKGKILKSE 564

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   +D   R  L  NHS THL+ +ALS   G  + Q GS    + L FD   SK  +
Sbjct: 565 L-INAEVDSNIRIGLERNHSGTHLVFNALSREFGKEIEQLGSDNNEERLTFDFPLSKKPS 623

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YND--RVRVVSVEYED 685
             E+K++E  VN+ I  ++     I   E A    A   L  + Y D   VR+V+     
Sbjct: 624 WEEIKNVEKRVNEYINMSVDREYIITTLEGAKKLNAVMTLEEQEYMDPNEVRIVNF---- 679

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR----------ARSHL 735
               ++ LCGGTH+ +T +I    I+S  S      RI+AIT ++          +++ L
Sbjct: 680 -PKITADLCGGTHIENTKKIETFKIISLDSKGKNKFRIKAITSKKIVEEYLKDEISKNKL 738

Query: 736 MGQD--EKLKSLASFLKVS----------QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           + ++  EK KSL    K++             +   +++   +Y+KL L +++ KL+   
Sbjct: 739 VLENLIEKNKSLFQGYKMNFSWSKNLDEQNEQITKHIDQARSDYKKL-LKNSENKLEKLE 797

Query: 784 EDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            D S  K  +    + II +++ K   L+S++  L++K    I++L   S+  K    I 
Sbjct: 798 SDFSIMKFKN----TEIIFDMNLKMASLQSLVATLREKNPKAIVILG--SEISKGKFFIC 851

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           V       F+A D++ +  +   G GGG 
Sbjct: 852 VGS---KEFSAKDISNIIFEKYKGKGGGN 877


>gi|319777240|ref|YP_004136891.1| alanyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|318038315|gb|ADV34514.1| Alanyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 873

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 285/911 (31%), Positives = 466/911 (51%), Gaps = 102/911 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L +F+  GH  + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T  QK
Sbjct: 9   IREKWLRYFESKGHLRVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLTNSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D ++LY
Sbjct: 69  AIRT----NDIENVGVTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDPKKLY 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG- 185
           +T + ED +  K W +  G+    +I  T + NFW +  +GPCGP +EIF+D+G      
Sbjct: 125 MTYFAEDLDTKKYWME-QGVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPKYNKR 182

Query: 186 --GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
              L     E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+   N
Sbjct: 183 GLELLKKDIENDRYIEIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQDAPTN 242

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIADGILP 292
           YD DLF ++I+  E+   +KY+ +N             N +VI DH+R+    IADG   
Sbjct: 243 YDSDLFINIIKEIEKYATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIADGAKV 302

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGY++RR++RR++     LG  + L +H L  +  +   + P     K ++   ++
Sbjct: 303 SNVGRGYIIRRLIRRSIYKGMQLG-VKGLFLHKLVDVVQD---SLPYEYDKKPVV-VAIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+  F +T+++G +LL+  + +  K +I +G+ AF L +T+G P+++  +IL  + +  
Sbjct: 358 EEELAFHQTIEKGKLLLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKKNIK- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL---KEKYGATQFIGY-DLLRGSKF 468
           +D+    +A EE + R    S G      +K+  SL   K K G  +FIGY DL   SK 
Sbjct: 415 VDL----KAFEEAKERHANLSRGEKVNGMDKVINSLALIKGKIG--EFIGYTDLESKSKI 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +    K+L  +  +   NG   +                      + D+TPFYA +GGQ 
Sbjct: 469 L----KLLNNEEEVKSLNGEGYL----------------------ILDKTPFYATSGGQN 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  +    +++I DV K   G  +H      G +  + ++   +D + R  ++  HS
Sbjct: 503 HDHGFILQGKNKIKILDVFKDKFGNHIHKI---EGKINNKDTVECYVDKEVRIGMARGHS 559

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H+ Q GS IT + L FD    +  T  ++K IED ++  I QN+ 
Sbjct: 560 ATHLLFRALVKVLGPHIDQLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNVE 619

Query: 649 VVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               + N + A   GA   +  ++Y D   +  V+++  G+ +  LCGGTH+  TG +  
Sbjct: 620 REYIVTNIKKAKEMGAIMTIDESEYMDPNNIRIVDFK--GI-TKDLCGGTHLDRTGILED 676

Query: 708 LYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLKVSQ------------ 753
             I       AG+ RI A+   +  + +L   ++ LK  L + +K +Q            
Sbjct: 677 FKITKVEKKTAGVFRIRAVASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFTP 736

Query: 754 --------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
                    N+   ++++ E+ +  +LI  K  +  + + +   K     +  +I  + D
Sbjct: 737 NKDVEIECANIKKTIDKVHEDIK--ELIKNKSNITFDFDSVQLTKNKKYPYYLNI--DFD 792

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           S ++K     L++K    II+L   S  +   +L+ V   +LD  N +   ++++K  G 
Sbjct: 793 SSQVKVAAATLREKFPEAIIVLGAKSNNQ---ILLCVAAKVLDA-NKL-FQQIASKTNGR 847

Query: 866 GGGGGRPHMAQ 876
           GGG     M +
Sbjct: 848 GGGSSIISMGK 858


>gi|238809909|dbj|BAH69699.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 875

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 284/903 (31%), Positives = 464/903 (51%), Gaps = 102/903 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  +L +F+  GH  + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T  QK
Sbjct: 11  IREKWLRYFESKGHLRVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLTNSQK 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D ++LY
Sbjct: 71  AIRT----NDIENVGVTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDPKKLY 126

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG- 185
           +T + ED +  K W +  G+    +I  T + NFW +  +GPCGP +EIF+D+G      
Sbjct: 127 MTYFAEDLDTKKYWME-QGVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPKYNKR 184

Query: 186 --GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
              L     E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+   N
Sbjct: 185 GLELLKKDIENDRYIEIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQDAPTN 244

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIADGILP 292
           YD DLF ++I+  E+   +KY+ +N             N +VI DH+R+    IADG   
Sbjct: 245 YDSDLFINIIKEIEKYATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIADGAKV 304

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGY++RR++RR++     LG  + L +H L  +  +   + P     K ++   ++
Sbjct: 305 SNVGRGYIIRRLIRRSIYKGMQLG-VKGLFLHKLVDVVQD---SLPYEYDKKPVV-VAIK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+  F +T+++G +LL+  + +  K +I +G+ AF L +T+G P+++  +IL  + +  
Sbjct: 360 EEELAFHQTIEKGKLLLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKKNIK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL---KEKYGATQFIGY-DLLRGSKF 468
           +D+    +A EE + R    S G      +K+  SL   K K G  +FIGY DL   SK 
Sbjct: 417 VDL----KAFEEAKERHANLSRGEKVNGMDKVINSLALIKGKIG--EFIGYTDLESKSKI 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +    K+L  +  +   NG   +                      + D+TPFYA +GGQ 
Sbjct: 471 L----KLLNNEEEVKSLNGEGYL----------------------ILDKTPFYATSGGQN 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  +    +++I DV K   G  +H      G +  + ++   +D + R  ++  HS
Sbjct: 505 HDHGFILQGKNKIKILDVFKDKFGNHIHKI---EGKINNKDTVECYVDKEVRIGMARGHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H+ Q GS IT + L FD    +  T  ++K IED ++  I QN+ 
Sbjct: 562 ATHLLFRALVKVLGPHIDQLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNVE 621

Query: 649 VVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               + N + A   GA   +  ++Y D   +  V+++  G+ +  LCGGTH+  TG +  
Sbjct: 622 REYIVTNIKKAKEMGAIMTIDESEYMDPNNIRIVDFK--GI-TKDLCGGTHLDRTGILED 678

Query: 708 LYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLKVSQ------------ 753
             I       AG+ RI A+   +  + +L   ++ LK  L + +K +Q            
Sbjct: 679 FKITKVEKKTAGVFRIRAVASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFTP 738

Query: 754 --------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
                    N+   ++++ E+ +  +LI  K  +  + + +   K     +  +I  + D
Sbjct: 739 NKDVEIECANIKKTIDKVHEDIK--ELIKNKSNITFDFDSVQLTKNKKYPYYLNI--DFD 794

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           S ++K     L++K    II+L   S  +   +L+ V   +LD  N +   ++++K  G 
Sbjct: 795 SSQVKVAAATLREKFPEAIIVLGAKSNNQ---ILLCVAAKVLDA-NKL-FQQIASKTNGR 849

Query: 866 GGG 868
           GGG
Sbjct: 850 GGG 852


>gi|12045148|ref|NP_072959.1| alanyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351145|sp|P47534|SYA_MYCGE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3844871|gb|AAC71513.1| alanyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078929|gb|ABY79547.1| alanyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 900

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 238/770 (30%), Positives = 383/770 (49%), Gaps = 74/770 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R T+L++F K  H +L S SLIP NDP+L++ NSG+   K+ F+ ++ P  + +   Q 
Sbjct: 8   VRQTWLDYFAKKDHLVLASKSLIPINDPSLLWINSGVATLKDYFSARKTPPSKRLVNAQI 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVG T+RH T FEMLGNFS G YFK  AI  A+DLL   + LD +R Y
Sbjct: 68  CLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKTEAIDFAFDLLVNYYQLDPKRFY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY++DE  +K W K   +  + II+   + NFW +   GPCGPC+EI++D+GE     
Sbjct: 124 ITVYEDDETTYKRWIK-HKIDKNHIIKCDKSRNFWDLG-LGPCGPCTEIYYDRGEKFDPK 181

Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        E +RY+EIWN+VF QF          L + +IDTG G+ER+ +VLQ   
Sbjct: 182 KIGEKLFFEDIENDRYVEIWNIVFSQFNNDGNGNYTELAQKNIDTGAGIERLVSVLQNSP 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIADGI 290
            N+D D+F  LI+  E     KY+ N+               R+I DH ++ +F I++G+
Sbjct: 242 TNFDTDIFLKLIKIIEAFCPFKYDPNSYFTFDPQKVKEQSYFRIIADHFKAITFTISEGV 301

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP    R YV+RR++RRA+   + L      +  ++  +     + Y  L      +++ 
Sbjct: 302 LPGPNERNYVVRRLLRRALIACKKLQLNLAFIEKIIDEIIASYENYYQHLKAKNETVKQV 361

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E   F KT+D GLVL +  +    K+  L   + F+L +T+G P++I+++++  +GL
Sbjct: 362 VLKEINAFNKTIDLGLVLFEKSV----KNNTLTPQLTFQLNETYGFPVEIIRELVNQKGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F+Q + + RS ++ ++  +          + K K              S F  
Sbjct: 418 T-IDWTVFDQLMAKHRSISKQNNQTINFEKQNINLVNFKTK--------------STFFY 462

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          N +++ V  +  +  +  + ++ Q   VVFDQT  YA +GGQ  D
Sbjct: 463 H-------------KNKINAKVIGLFDENYLPVKELNNQSGYVVFDQTVLYATSGGQRYD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIF-------VHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            G  I         D +   +G+F        H+ +V  G  +    + L+ D   R+  
Sbjct: 510 EGSCINHS---NNNDQKISFQGVFKGPNKQHFHYFLV--GSFKLNDQVTLSHDETWRKLA 564

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS  HLLH AL   +   + Q+G+  +      D   ++ +T  EL+ +E+ +  +I
Sbjct: 565 ANNHSLEHLLHAALQKEIDPLIKQSGAFKSAQKATIDFNLNRHLTRNELEKVENKIRSLI 624

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVVSVEYEDGGVHSSALCGGTHVSS 701
            Q +       + E +    A A    +Y+    +RV+       G +S  LCGGTHV++
Sbjct: 625 KQKISSKEIFTDFEGSQKLNAIAYFEEEYSQHEILRVIRF-----GDYSVELCGGTHVAN 679

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLK 750
           T  I   +I    S+ AG  RIE I+      ++L  +++KL  L S L+
Sbjct: 680 TASIEDCFITDFYSLGAGRWRIEIISSNETINNYLKAENQKLIQLKSELE 729


>gi|193216583|ref|YP_001999825.1| alanyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193001906|gb|ACF07121.1| alanyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 885

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 249/776 (32%), Positives = 398/776 (51%), Gaps = 72/776 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  +L+FF    H ++PS SLIP NDP+L++ NSG+   K+ F+G++ P  + 
Sbjct: 1   MLSSKQIRQMWLDFFASKRHLVVPSKSLIPVNDPSLLWINSGVATLKDYFSGKKIPPAKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI   ++ +     L
Sbjct: 61  LTNSQKSIRT----NDIENVGVTARHHTFFEMLGNFSIGDYFKKEAINFGYEFIFDVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ R+YIT + ED+E ++ W K  G+S D +I  T + NFW + + GPCGP +EIF+D+G
Sbjct: 117 EKDRIYITYFAEDKETYETWIK-CGISPDHLIAGTRDTNFWDVGQ-GPCGPDTEIFYDRG 174

Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L     E +R+IEIWN+VF Q+    +     L   +IDTG GLER+ +++
Sbjct: 175 PKYDSRGIELLKEDLENDRFIEIWNIVFSQYNNDGENNYSELISKNIDTGAGLERIVSIM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDHLRSSSFLI 286
           Q+   N+D DLF  +I+A E++T  KY+ NN               ++I DH+R+S   I
Sbjct: 235 QDAPTNFDTDLFLPIIKAIEKLTSYKYDINNYFTKEAKQAKINTYFKIIADHMRASVNAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+N GRGY++RR++RR+      LG +    ++ L  +  +  S   E+ +    
Sbjct: 295 NDGVSPSNVGRGYIIRRLIRRSYRAGISLGISASSFLYKLVKVVKD--SLIYEIDEEN-- 350

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + ++ E+E F KT+  G  LL+  +   G    +  ++ FK++DT+G P+++  +IL 
Sbjct: 351 VAKIIKQEEELFAKTIKEGEKLLENEIKKHG---TVTTEIVFKMFDTYGFPIELTSEILK 407

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
            + +A I++  F Q L+E + ++R     L SG   K+  SL    G  ++FIGYD L+ 
Sbjct: 408 EKNIA-INLEEFKQYLKEHQEKSRG---SLESGMN-KVINSLATIPGYVSEFIGYDFLKS 462

Query: 466 SK---FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           +    ++ +D+K +                            A   +   ++ D+TPFYA
Sbjct: 463 ASKILYLLDDQKAIAH--------------------------ANDDEISYLILDKTPFYA 496

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            +GGQ  D G        +++ DV K      VH     +G +     +   +D   R  
Sbjct: 497 TSGGQNHDHGYLKQGNNIIEVLDVFKDKYWNHVHKV---KGSIDASQPIECYVDEPKRLN 553

Query: 583 LSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            + NHS+THL++HAL  T     + Q GS I+ D   FD       T  E + IE  +  
Sbjct: 554 FARNHSSTHLMYHALRETYPNEPIEQLGSNISFDHFTFDFGLDHRPTVQECRQIEKIMRS 613

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            IA +      I   + A   GA   +  ++Y+D  +V  VE+E+    +  +CGGTHV 
Sbjct: 614 YIAFSAKRNYIITTIKKAQEMGAWMTIEESEYHDANKVRVVEFENI---TKDVCGGTHVP 670

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD--EKLKSLASFLKVSQG 754
           ++  I    IVS  S      R+  +T     +  +  +  EK K L+  +K +Q 
Sbjct: 671 NSSVIEDFKIVSVDSKGTDTYRLRVVTSSALVNEYLTDEIKEKQKLLSILIKNNQA 726


>gi|330960444|gb|EGH60704.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 316

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/314 (57%), Positives = 223/314 (71%), Gaps = 12/314 (3%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKDIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G  I GG PGS EE G+RYIEIWN VFMQF +        LP  S+DTGMGLER++
Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+N
Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301

Query: 295 EGRGYVLRRIMRRA 308
           EGRGYVLRRI+RRA
Sbjct: 302 EGRGYVLRRIIRRA 315


>gi|15829028|ref|NP_326388.1| alanyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|81620588|sp|Q98Q12|SYA_MYCPU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14089972|emb|CAC13730.1| ALANYL-TRNA SYNTHETASE (ALANINE--TRNA LIGASE) (ALARS) [Mycoplasma
           pulmonis]
          Length = 873

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 280/909 (30%), Positives = 440/909 (48%), Gaps = 99/909 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  ++ FF+   H  L S SLIP +DP+L++ NSG+   K+ F+G++ P    
Sbjct: 1   MLSSKEIRQKWITFFESKNHLKLESKSLIPVDDPSLLWINSGVATLKDYFSGKKTPPSPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ A+  A + +     L
Sbjct: 61  IVNSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEALAFAKEFVLDVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +LY T Y ED E  ++W  + G     +I  +   NFW +   GPCGP +EIF+D+G
Sbjct: 117 EKEKLYFTYYHEDLETKQIWLDL-GFDPSHLIAGSRKTNFWDVG-MGPCGPNTEIFYDRG 174

Query: 181 -ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            +  P G+    E  E +RYIEIWN+VF  F    K     L   +IDTG G ER+ ++L
Sbjct: 175 PKYDPRGVELLKEDIENDRYIEIWNIVFSTFNNDGKNNYSELKLKNIDTGAGFERIVSIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDHLRSSSFLI 286
           Q    NYD DLF  +I+A E++T  KY   N   +           ++I DH+RS +  I
Sbjct: 235 QNAPTNYDTDLFLPIIRAIEKLTNKKYVVENYFQNEPVQREINTYFKIIADHMRSVANAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-EPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG   +N GR Y++RR++RRA      LG   E  +  L+P +   +   Y     AK+
Sbjct: 295 GDGAGVSNVGRDYIIRRLIRRAYRTGIQLGIKDEAFLYKLVPVIKDSLIFDYDTKHVAKV 354

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           + +E L      F KT+D+G  +L+       K + ++  + FK++DT+G P+++ +++ 
Sbjct: 355 IKDEEL-----LFSKTIDQGKKILE---KEFEKSKKIDASIVFKMFDTYGYPVELTKEMA 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G+  I +  F +  +E   ++++     G G  + I F         +F+GYD L  
Sbjct: 407 KEKGVE-ISLEEFEKYRQEHELKSKSKK---GDGMKKVINFLANIDKKVDEFVGYDTLET 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +       K+L       L N  S + K            + GQ    + D+TPFYA +G
Sbjct: 463 T------SKILY------LFNSESKLNK------------LEGQGY-FILDKTPFYATSG 497

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    DG + +I +V K      VH   + +G + +   L   +D +NR+ L  
Sbjct: 498 GQKHDQGYVEQDGKKFKILEVFKDKNWNHVH---LVKGEIDSSKELKCVVDAKNRKNLER 554

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLL   L   +G  V Q GS      L FD       +  ++K IE  V  II  
Sbjct: 555 NHSATHLLFKVLRDQIGPFVVQLGSNNNEKRLTFDFPSQNKPSKEKIKEIEKQVRKIIE- 613

Query: 646 NLPVVTRIMNREDAIASGAAALLG---TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            L +  +  N     A    A++    T+Y D   V  V +++    +S LCGGTH+ +T
Sbjct: 614 -LSIDRQYSNETIDKAKEMGAIITIEETEYMDPTNVRIVTFKN---ITSDLCGGTHIPNT 669

Query: 703 GEIMLLYIVSESSIRAGIRRIEAIT--------GQRARSHLMGQDEKL-----KSLASF- 748
             I    I+S  +   GI RI AIT         Q    +L+ Q + +     K   SF 
Sbjct: 670 KLIENFKIISVENKGTGIFRISAITTEKLVRAFNQEHFDNLIEQQQNIIKKIQKINPSFK 729

Query: 749 ---------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
                    L+  Q  V   +  + +E++K   + ++  +++N E+L    IA  N+  +
Sbjct: 730 YKNQFKSDDLEQRQVEVEESILALQQEFKK--ALKSQENVEINFENLEFENIA--NYKVY 785

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           I  E D   +K+    L++K    +I+L  +  EK +++L + ++   D     +L +  
Sbjct: 786 INLEADKNTIKAQGAQLREKFDDLLIILASV--EKNSTILTIASKK-YDSNKIFNLLKSE 842

Query: 860 AKVLGGGGG 868
             + GGG  
Sbjct: 843 YSLKGGGNA 851


>gi|293363884|ref|ZP_06610620.1| alanine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552374|gb|EFF41148.1| alanine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 875

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 251/759 (33%), Positives = 390/759 (51%), Gaps = 67/759 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  +L F+++  H ++P+ SL+P ND +L++ NSG+   K+ F+G++ P    +T
Sbjct: 2   NSKKIRQDWLNFWEQKQHLIVPTKSLVPVNDNSLLWINSGVATLKDYFSGKKNPPSLRLT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  A + L     LD+
Sbjct: 62  NSQKAIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEAIYWASEYLNNILKLDK 117

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+ T + ED E  KLW    G     +I      NFW +  +GPCGP +EIF+D+G  
Sbjct: 118 EKLFFTYFHEDLETKKLWMD-CGYDESHMIPGDKKTNFWEVG-SGPCGPNTEIFYDRGAK 175

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +RYIEIWN+VF  +    +     L + +IDTG GLER+ +++Q+
Sbjct: 176 YDSRGIELLKEDLENDRYIEIWNIVFSTYNSDGEGNYTELKQKNIDTGAGLERIVSIMQD 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIAD 288
              NYD DLF  +IQ  E+    KY+ NN             + ++I DH+R+ +  IAD
Sbjct: 236 APTNYDSDLFIPIIQEIEKYVEFKYDTNNYFKKDLEQEKINTSFKIIADHIRTVANAIAD 295

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY+LRR++RR++     L     L ++ L  +   + S  P     K  +E
Sbjct: 296 GAKVSNVGRGYILRRLIRRSIYKGMQLKVKSSLFLYKLVKI---VKSTLPYEYDTK-KVE 351

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KT+++G  LL+  L    K  I +G+  FKL +T+G PL++ ++IL  +
Sbjct: 352 KAIKEEEELFAKTIEKGRKLLEKNLEDNTK--IFSGETTFKLLETYGFPLELTKEILEEK 409

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-EKYGATQFIGYDLLR-GS 466
            ++ I++  F QA +   + +R   +   SG  +K+  SL   K     F+GY+ +   S
Sbjct: 410 NIS-INMEEFEQAKQNHANASRGKKI---SG-MDKVINSLSLLKSKIDNFVGYEQVEITS 464

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
           K +    K+   +  I+  +G+S +                      + + TPFYA +GG
Sbjct: 465 KIL----KLFNTENEIEQNDGISYL----------------------ILESTPFYATSGG 498

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  I D  +L I DV K   G  +H     +G +  ++ +   +D   R  L  N
Sbjct: 499 QKHDRGHLIQDKNKLIIIDVFKDKFGNHIHKV---KGKINKKLPIECFVDKTIRLGLERN 555

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THLL+ AL  ILG  + Q GS    + L FD+      T+ E+  IE  V   I Q+
Sbjct: 556 HSGTHLLYCALRNILGKQIVQLGSDNNEERLTFDLPADTKPTNEEILKIEKLVKTYIQQD 615

Query: 647 LPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                  M+ + A    A   L   +Y D+  V  V++++    ++ LCGGTH+S+T ++
Sbjct: 616 AKREYLQMSIDKAKQINAILTLEEGEYMDQNNVRIVKFDN---ITADLCGGTHLSNTAKL 672

Query: 706 MLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLK 743
               IV      AG+ RI+AI+  +    +L  + EK +
Sbjct: 673 ENFKIVEVEKKSAGVFRIKAISSNKLVNDYLTKEIEKFE 711


>gi|308189958|ref|YP_003922889.1| alanine--tRNA ligase [Mycoplasma fermentans JER]
 gi|307624700|gb|ADN69005.1| alanine--tRNA ligase [Mycoplasma fermentans JER]
          Length = 851

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 279/895 (31%), Positives = 457/895 (51%), Gaps = 102/895 (11%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T  QK +R     ND++NVG 
Sbjct: 3   VESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLTNSQKAIRT----NDIENVGV 58

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142
           T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D ++LY+T + ED +  K W +
Sbjct: 59  TSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDPKKLYMTYFAEDLDTKKYWME 118

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSEEGERYIE 199
             G+    +I  T + NFW +  +GPCGP +EIF+D+G         L     E +RYIE
Sbjct: 119 -QGVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPKYNKRGLELLKKDIENDRYIE 176

Query: 200 IWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           IWN+VF QF    +     L + +IDTG GLER+A+++Q+   NYD DLF ++I+  E+ 
Sbjct: 177 IWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQDAPTNYDSDLFINIIKEIEKY 236

Query: 260 TGMKYEGNNI-----------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
             +KY+ +N             N +VI DH+R+    IADG   +N GRGY++RR++RR+
Sbjct: 237 ATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIADGAKVSNVGRGYIIRRLIRRS 296

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           +     LG  + L +H L  +  +   + P     K ++   ++ E+  F +T+++G +L
Sbjct: 297 IYKGMQLG-VKGLFLHKLVDVVQD---SLPYEYDKKPVV-VAIKEEELAFHQTIEKGKLL 351

Query: 369 LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
           L+  + +  K +I +G+ AF L +T+G P+++  +IL  + +  +D+    +A EE + R
Sbjct: 352 LEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKKNIK-VDL----KAFEEAKER 404

Query: 429 ARAHSLGLGSGTTEKIWFSL---KEKYGATQFIGY-DLLRGSKFMKEDRKVLCQKPPIDL 484
               S G      +K+  SL   K K G  +FIGY DL   SK +    K+L  +  +  
Sbjct: 405 HANLSRGEKVNGMDKVINSLALIKGKIG--EFIGYTDLESKSKIL----KLLNNEEEVKS 458

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
            NG   +                      + D+TPFYA +GGQ  D G  +    +++I 
Sbjct: 459 LNGEGYL----------------------ILDKTPFYATSGGQNHDHGFILQGKNKIKIL 496

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DV K   G  +H      G +  + ++   +D + R  ++  HSATHLL  AL  +LG H
Sbjct: 497 DVFKDKFGNHIHKI---EGKINNKDTVECYVDKEVRIGMARGHSATHLLFRALVKVLGPH 553

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           + Q GS IT + L FD    +  T  ++K IED ++  I QN+     + N + A   GA
Sbjct: 554 IDQLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNVEREYIVTNIKKAKEMGA 613

Query: 665 AALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              +  ++Y D   +  V+++  G+ +  LCGGTH+  TG +    I       AG+ RI
Sbjct: 614 IMTIDESEYMDPNNIRIVDFK--GI-TKDLCGGTHLDRTGILEDFKITKVEKKTAGVFRI 670

Query: 724 EAITGQR-ARSHLMGQDEKLKS-LASFLKVSQ--------------------GNVVGRVE 761
            A+   +  + +L   ++ LK  L + +K +Q                     N+   ++
Sbjct: 671 RAVASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFTPNKDVEIECANIKKTID 730

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           ++ E+ +  +LI  K  +  + + +   K     +  +I  + DS ++K     L++K  
Sbjct: 731 KVHEDIK--ELIKNKSNITFDFDSVQLTKNKKYPYYLNI--DFDSSQVKVAAATLREKFP 786

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             II+L   S  +   +L+ V   +LD  N +   ++++K  G GGG     M +
Sbjct: 787 EAIIVLGAKSNNQ---ILLCVAAKVLDA-NKL-FQQIASKTNGRGGGSSIISMGK 836


>gi|91087359|ref|XP_975627.1| PREDICTED: similar to mitochondrial alanyl-tRNA synthetase
           CG4633-PA [Tribolium castaneum]
          Length = 1044

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 257/809 (31%), Positives = 403/809 (49%), Gaps = 105/809 (12%)

Query: 6   SIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +IR  FL++F  KN H  + SS ++P  DPT+ F N+GM  FK +F G  +P Y+ V   
Sbjct: 78  AIRQKFLDYFINKNNHNFIKSSPVVPFCDPTVAFVNAGMNQFKGVFLGTHQPQYKNVANS 137

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R GGKHNDL+ VG    HHTFFEMLGN+SFG YFK+ A +LAW LLT+E+ +   R
Sbjct: 138 QKCIRVGGKHNDLNVVGGDGYHHTFFEMLGNWSFGDYFKQEACELAWKLLTEEYKIHPSR 197

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T +        DED E  ++WK I G+S D+I+  T+ DNFW M  TGPCGPC+EI 
Sbjct: 198 LYVTYFKGDPVLGIDEDLETKEIWKTI-GVSEDRILPFTSKDNFWEMGPTGPCGPCTEIH 256

Query: 177 FD------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            D      + + +  GL           E+WNLVF+Q+ +++ +   +LP+  +DTGMG 
Sbjct: 257 IDHTTSNNRAKLVNKGL-------HDLTELWNLVFIQYNRKSNESVDLLPEKHVDTGMGF 309

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVDHLRS 281
           ER+  VLQ K +NYD D F +L++A +  + + +Y G       N++  ++RV+ DH R 
Sbjct: 310 ERLTAVLQGKISNYDTDNFTYLLKAIQNCSKIPEYRGTFGEKDWNSLDASYRVLADHARM 369

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRA--MCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
            +  +AD ++P    +   LRR+MRRA  +C   +      L+  L   +   +G  YPE
Sbjct: 370 VTVCLADAMIPEQNQK---LRRVMRRAFLLC-ENVFNKDSGLLKELSNYVIEHLGCVYPE 425

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--------------------- 378
           + +    I + +  E+E +     +       +  H  K                     
Sbjct: 426 MERNVKQIHQIIDYEEEVYKSVRKQATEEWVKLAKHQPKLLSLDINENPSLVAGYKEISS 485

Query: 379 --DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN-----QALEEQRSRARA 431
              + ++  +AFKLYDT GL  D +        LA I  + FN     + LE  + R++ 
Sbjct: 486 TNPKFIDAQLAFKLYDTFGLDEDSIS------SLAQILNLPFNASDLHKQLELAKIRSKE 539

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
             L  G    E++  +   K   +    Y   +G K++ +D +V               +
Sbjct: 540 QGLVSGPNVYEQLTRAKVPKTDRSTLYNY-AKKGEKYVFDDLEV---------------V 583

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKA 550
           +  IV+  ++V +  S     +V D++ FY EAGGQ+ D G    GD +  ++T+ Q   
Sbjct: 584 ILKIVKDSKLVRQIESENFYGLVLDKSSFYTEAGGQISDRGAINFGDCV-FEVTEAQ-DC 641

Query: 551 EGIFVHHAIV---ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
            G  +H   +   E G ++  M+  L ID   R +   NH+A HLL+  L  + G+   Q
Sbjct: 642 NGYILHKGFLRSGESGRVKVGMTGSLKIDPDFRLKNMRNHTAVHLLNSVLKKVKGA-TCQ 700

Query: 608 NGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAA 665
             S +T +    DV   ++ ++  EL+ +E  +  +I   LPV ++ + ++  A      
Sbjct: 701 KSSKVTQNYFNLDVGIFAEKLSLDELELVESTITKVIQGRLPVNISELDSQRLANLDEII 760

Query: 666 ALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            + G  Y +  +RVV V+  +G + S   C GTHV +T +I    IVS  S+      I 
Sbjct: 761 LIPGEVYPETGIRVVEVKGGEGFL-SREPCCGTHVLNTSDIEDFCIVSMKSLGRSTTSIH 819

Query: 725 AITGQRAR------SHLMGQDEKLKSLAS 747
            +TG RA+      +HL+   E L+   S
Sbjct: 820 GVTGDRAKVAKSNGTHLLTNLETLEKSVS 848


>gi|298526028|ref|ZP_07013437.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|298495822|gb|EFI31116.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
          Length = 750

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 270/764 (35%), Positives = 404/764 (52%), Gaps = 52/764 (6%)

Query: 158 DNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNK 213
           DN+WSM   GPCGP SEI++D+G E  P G P  SE+  RY+E+WNLVFMQ E+     K
Sbjct: 3   DNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTK 60

Query: 214 QERFIL---PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN-- 267
           ++  IL   P+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y+ GN  
Sbjct: 61  EDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHE 120

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
           + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+ 
Sbjct: 121 DDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMA 180

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGD 385
            +   MG +YPEL+     I     +E+  F +TL  G  L + V S   K    +L+G 
Sbjct: 181 TVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGS 240

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        +   
Sbjct: 241 DAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSA 299

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
           +      GAT+F G+D LR S+       V  ++ P+ + +GV+               A
Sbjct: 300 YRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG-------------GA 344

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVE 561
             GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE
Sbjct: 345 GEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVE 404

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD 
Sbjct: 405 SGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDF 464

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
               P+T  +   +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV  
Sbjct: 465 NWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV-- 522

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             E GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   
Sbjct: 523 --EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERAL 580

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNF 796
           +  LAS LKV    V  RV  + E  R  +    + ++               +I +V  
Sbjct: 581 MAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRL 640

Query: 797 MSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRF 850
           ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V      +DL  R 
Sbjct: 641 VAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRA 700

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           N  DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 701 N--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 741


>gi|289575261|ref|ZP_06455488.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289539692|gb|EFD44270.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
          Length = 750

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 270/764 (35%), Positives = 404/764 (52%), Gaps = 52/764 (6%)

Query: 158 DNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNK 213
           DN+WSM   GPCGP SEI++D+G E  P G P  SE+  RY+E+WNLVFMQ E+     K
Sbjct: 3   DNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTK 60

Query: 214 QERFIL---PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN-- 267
           ++  IL   P+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y+ GN  
Sbjct: 61  EDYQILGPLPRNNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHE 120

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
           + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+ 
Sbjct: 121 DDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMA 180

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGD 385
            +   MG +YPEL+     I     +E+  F +TL  G  L + V S   K    +L+G 
Sbjct: 181 TVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGS 240

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        +   
Sbjct: 241 DAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSA 299

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
           +      GAT+F G+D LR S+       V  ++ P+ + +GV+               A
Sbjct: 300 YRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG-------------GA 344

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVE 561
             GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE
Sbjct: 345 GEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVE 404

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD 
Sbjct: 405 SGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDF 464

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
               P+T  +   +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV  
Sbjct: 465 NWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV-- 522

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             E GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   
Sbjct: 523 --EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERAL 580

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNF 796
           +  LAS LKV    V  RV  + E  R  +    + ++               +I +V  
Sbjct: 581 MAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRL 640

Query: 797 MSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRF 850
           ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V      +DL  R 
Sbjct: 641 VAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRA 700

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           N  DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 701 N--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 741


>gi|260205874|ref|ZP_05773365.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
          Length = 751

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 270/764 (35%), Positives = 404/764 (52%), Gaps = 52/764 (6%)

Query: 158 DNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNK 213
           DN+WSM   GPCGP SEI++D+G E  P G P  SE+  RY+E+WNLVFMQ E+     K
Sbjct: 4   DNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTK 61

Query: 214 QERFIL---PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN-- 267
           ++  IL   P+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y+ GN  
Sbjct: 62  EDYQILGPLPRNNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHE 121

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
           + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+ 
Sbjct: 122 DDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMA 181

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGD 385
            +   MG +YPEL+     I     +E+  F +TL  G  L + V S   K    +L+G 
Sbjct: 182 TVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGS 241

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        +   
Sbjct: 242 DAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSA 300

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
           +      GAT+F G+D LR S+       V  ++ P+ + +GV+               A
Sbjct: 301 YRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG-------------GA 345

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVE 561
             GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE
Sbjct: 346 GEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVE 405

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD 
Sbjct: 406 SGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDF 465

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
               P+T  +   +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV  
Sbjct: 466 NWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV-- 523

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             E GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   
Sbjct: 524 --EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERAL 581

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNF 796
           +  LAS LKV    V  RV  + E  R  +    + ++               +I +V  
Sbjct: 582 MAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRL 641

Query: 797 MSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRF 850
           ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V      +DL  R 
Sbjct: 642 VAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRA 701

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           N  DL +  A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 702 N--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 742


>gi|169806523|ref|XP_001828006.1| alanyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|161779146|gb|EDQ31171.1| alanyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 817

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 234/709 (33%), Positives = 381/709 (53%), Gaps = 83/709 (11%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           MV FKNI  G E P+Y+ V T+Q C+RAGGKHNDLD+VG+ N HHTFFEM+GN+SFG YF
Sbjct: 1   MVQFKNIILG-ESPMYKRVNTIQHCIRAGGKHNDLDDVGKDNYHHTFFEMMGNWSFGDYF 59

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFW 161
           KE+AIQ A++ L     LD+ RLY+T+Y+E D E+  +WKK      +KII  +  DNFW
Sbjct: 60  KEQAIQYAYEFLVDVLKLDKDRLYVTIYEEMDVESRNIWKKY--FPDEKIINGSHKDNFW 117

Query: 162 SMAETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
            M E GPCGPC+EI +D+ G      L   +++    IEIWN+VFM+F   NK  + +LP
Sbjct: 118 EMGEFGPCGPCTEIHYDRIGNRDARNL--VNKDDPNVIEIWNIVFMEF---NKTPKGLLP 172

Query: 221 --KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVN--HRV 274
                IDTG+GLER+ ++L    +NY ID F ++I   E    M Y  E N I+    RV
Sbjct: 173 LEVKKIDTGIGLERLLSILNNVKSNYLIDTFLNIINFIEIKCNMTYNDEENTIITTAFRV 232

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           + DH R+ +  +   +  +NEGRGYVLRRI+RRA+ +A         ++++   + +E+ 
Sbjct: 233 VADHARTLAICLYYNVSFSNEGRGYVLRRILRRAVRFA-------SEILNINDNVLSEIV 285

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
               +++    +    +  E++ F KTL  GL+ L+ ++   GK   ++ + AF LYDT+
Sbjct: 286 QKAAQVLNLSSINVSVIDYEEKLFKKTLKNGLIKLNKIIEAEGK---ISSENAFLLYDTY 342

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P D+ + I   +G+  I++  F   L  Q+ +++           EK   S+K ++  
Sbjct: 343 GFPKDLTKIIAEEKGIE-INLDKFENLLNNQKKKSKG----------EKDIISIKFEFDK 391

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           T           KF     ++  +             ++AI+   EIV    + Q+ +++
Sbjct: 392 TD---------DKFKYTHTEIKGE-------------LQAIIFNNEIVHSLDNEQEAQLI 429

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ---------KKAEGIFVHHAIVERGIL 565
           F++T FY E GGQ+GDTG      I     DVQ         K   G  +H+     G L
Sbjct: 430 FNKTCFYGECGGQVGDTGT-----ITFFDNDVQVGWFNVINTKIVRGYVLHY-----GKL 479

Query: 566 RTEMSLVLTIDYQNRRQLSI--NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
             ++S+   +   N R+++I  NHS+ H++   +   + ++V Q GS +      +D  +
Sbjct: 480 FGKISINGLLKINNDRRINIRNNHSSCHIIGGLIKQFISTNVEQKGSYVDEFKCTYDFNY 539

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDRVRVVSVE 682
              I+ ++L  +E   ND I   + +  + +++++ +      L+   +Y + +RV+ ++
Sbjct: 540 PSKISDSQLIELEKKANDFICSGINITVQYLSKKEVLDDPNIILMKNVEYPEPMRVIVMK 599

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            +D  +    LCGGTH  +  +I  + I++E+ +  G+RRI  ++G+ A
Sbjct: 600 SKD--LVLKELCGGTHAENLQDIKKIRIINENGVSMGVRRITLVSGKLA 646


>gi|13508158|ref|NP_110107.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2500958|sp|P75368|SYA_MYCPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1674107|gb|AAB96070.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129]
          Length = 900

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 269/878 (30%), Positives = 427/878 (48%), Gaps = 87/878 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R T+L++F   GH  LPS SLIP NDP+L++ NSG+   K+ F+ ++ P  + +   Q 
Sbjct: 8   VRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSKRLANAQI 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVG T+RH T FEMLGNFS G YFKE AI  A DLL   + LD +R Y
Sbjct: 68  CLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYHLDPKRFY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY +DE  F  W K  G+ A +II+   + NFW +   GPCGPC+EI++D+GE     
Sbjct: 124 ITVYQDDELTFNTWLK-HGIPASRIIKCDRDRNFWDLG-LGPCGPCTEIYYDRGERFDPH 181

Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        E +RY+E+WN+VF QF          L + +IDTG G+ER+  +LQ+  
Sbjct: 182 KVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLVAILQDAP 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIADGI 290
            N+D D+F  LI   EQ    KY+ N                R+I DH ++ +F IA+G+
Sbjct: 242 TNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAITFTIAEGV 301

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP    R Y++RR++RRA+   + L      +  ++ A+ +  GS Y +L     ++++ 
Sbjct: 302 LPGPNERSYIVRRLLRRALLACKKLDLDLKFIDPMVDAIISVYGSYYQQLQGKNQVVQQA 361

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E   F KT++ GL+L +  ++H      L   VAF+LY+T+G P++++++++  R L
Sbjct: 362 IWKEVTAFDKTINLGLMLFEKSIAH----NALQPQVAFQLYETYGFPIEMIKELVDKRQL 417

Query: 411 AGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
             +D  +  Q +E+ R  S+  +++L         + F                   S+F
Sbjct: 418 Q-VDWKAVEQLMEQHRLISKQNSNTLSFEKQNEHLVNFK----------------TASEF 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + E  ++             + ++    +Q + V++ +  Q   VVFDQT  YA +GGQ 
Sbjct: 461 LYEANEI------------TAKVIGLFDEQYQPVQK-LHNQSGYVVFDQTVLYATSGGQR 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFV-----HHAIVERGILRTEMSLVLTIDYQNRRQL 583
            D G  I      Q    Q    G+F      H      G  +    ++L  D + R+ +
Sbjct: 508 YDEGYCINHSQNDQRVSFQ----GVFKGPNKQHFHFFLTGSFQLGDKVILVHDGKWRQLV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS  HLLH AL   +   + Q+G+  +      D   S+ +T AEL+ +E  +  II
Sbjct: 564 KNNHSLEHLLHAALQNEIDPLIKQDGAFKSAQKATIDFNFSRALTWAELERVEHRIRQII 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q++       + E +    A A    +Y++   +  + + D  V    LCGGTHV  TG
Sbjct: 624 QQDIQREEIFTDLEGSQKLNAIAYFEEEYSNHELLRVIRFGDFSVE---LCGGTHVEHTG 680

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            I   +I    +   G  RIE I+      ++L  Q+ KL    + L  +  N+      
Sbjct: 681 LIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGKLSETINSLHNTLNNIANPALN 740

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +     QL H    L   + DL  C  +  +N +   ++E+ +++ K     L +KI+
Sbjct: 741 KQKTALTKQLNHF--HLPQVITDLRKCQAL--LNELKITVNELKTEDFKWKQKQLAEKIK 796

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
             ++ L   +K+ KA VL          F AVD   LS
Sbjct: 797 QELLEL---AKQDKAYVLA--------SFAAVDPKLLS 823


>gi|301633563|gb|ADK87117.1| alanine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 900

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 269/878 (30%), Positives = 427/878 (48%), Gaps = 87/878 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R T+L++F   GH  LPS SLIP NDP+L++ NSG+   K+ F+ ++ P  + +   Q 
Sbjct: 8   VRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSKRLANAQI 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++NVG T+RH T FEMLGNFS G YFKE AI  A DLL   + LD +R Y
Sbjct: 68  CLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYHLDPKRFY 123

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY +DE  F  W K  G+ A +II+   + NFW +   GPCGPC+EI++D+GE     
Sbjct: 124 ITVYQDDELTFNTWLK-HGIPASRIIKCDRDRNFWDLG-LGPCGPCTEIYYDRGERFDPH 181

Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        E +RY+E+WN+VF QF          L + +IDTG G+ER+  +LQ+  
Sbjct: 182 KVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLVAILQDAP 241

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIADGI 290
            N+D D+F  LI   EQ    KY+ N                R+I DH ++ +F IA+G+
Sbjct: 242 TNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAITFTIAEGV 301

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP    R Y++RR++RRA+   + L      +  ++ A+ +  GS Y +L     ++++ 
Sbjct: 302 LPGPNERSYIVRRLLRRALLACKKLDLDLKFIDPMVDAIISVYGSYYQQLQGKNQVVQQA 361

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E   F KT++ GL+L +  ++H      L   VAF+LY+T+G P++++++++  R L
Sbjct: 362 IWKEVTAFDKTINLGLMLFEKSIAH----NALKPQVAFQLYETYGFPIEMIKELVDKRQL 417

Query: 411 AGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
             +D  +  Q +E+ R  S+  +++L         + F                   S+F
Sbjct: 418 Q-VDWKAVEQLMEQHRLISKQNSNTLSFEKQNEHLVNFK----------------TASEF 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + E  ++             + ++    +Q + V++ +  Q   VVFDQT  YA +GGQ 
Sbjct: 461 LYEANEI------------TAKVIGLFDEQYQPVQK-LHNQSGYVVFDQTVLYATSGGQR 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFV-----HHAIVERGILRTEMSLVLTIDYQNRRQL 583
            D G  I      Q    Q    G+F      H      G  +    ++L  D + R+ +
Sbjct: 508 YDEGYCINHSQNDQRVSFQ----GVFKGPNKQHFHFFLTGSFQLGDKVILVHDGKWRQLV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS  HLLH AL   +   + Q+G+  +      D   S+ +T AEL+ +E  +  II
Sbjct: 564 KNNHSLEHLLHAALQKEIDPLIKQDGAFKSAQKATIDFNFSRALTWAELERVEHRIRQII 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q++       + E +    A A    +Y++   +  + + D  V    LCGGTHV  TG
Sbjct: 624 QQDIQREEIFTDLEGSQKLNAIAYFEEEYSNHELLRVIRFGDFSVE---LCGGTHVEHTG 680

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            I   +I    +   G  RIE I+      ++L  Q+ KL    + L  +  N+      
Sbjct: 681 LIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGKLSETINSLHNTLNNIANPALN 740

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +     QL H    L   + DL  C  +  +N +   ++E+ +++ K     L +KI+
Sbjct: 741 KQKTALTKQLNHF--HLPQVITDLRKCQAL--LNELKITVNELKTEDFKWKQKQLAEKIK 796

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
             ++ L   +K+ KA VL          F AVD   LS
Sbjct: 797 QELLEL---AKQDKAYVLA--------SFAAVDPKLLS 823


>gi|26554308|ref|NP_758242.1| alanyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|81747470|sp|Q8EUR6|SYA_MYCPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|26454317|dbj|BAC44646.1| alanyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 930

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 255/855 (29%), Positives = 426/855 (49%), Gaps = 92/855 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF+   H  + S SLIP ND +L++ NSG+   K  F+G+E P  + +T 
Sbjct: 7   TNEIRKLWLDFFKSKNHTEVESKSLIPKNDDSLLWINSGVATLKTFFSGKENPPSKRLTN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R     ND++NVG T+RHHTFFEMLGNFS G YF++ AI+   +L+ K F LD +
Sbjct: 67  SQRCLRT----NDIENVGLTSRHHTFFEMLGNFSIGDYFRKEAIEFGAELVFKVFKLDPK 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++YITVY+ED+E+F LW K +G     I++   + NFW +  +GPCGPC+EI++D+GE  
Sbjct: 123 KIYITVYEEDQESFDLWVK-NGAIKSHILKCDKSRNFWEIG-SGPCGPCTEIYYDRGEKY 180

Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G        E +RYIEIWN+VF +F    K     L + +IDTG GLER+A +LQ
Sbjct: 181 DFQKLGEKLFFEDIENDRYIEIWNIVFSEFNNDGKNNYTKLARQNIDTGAGLERLACILQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR-------------VIVDHLRSSSFL 285
           +   NYD D F ++    E+ +  KY+ N     +             VI+DH ++  F 
Sbjct: 241 DVPTNYDTDAFVNVRSVIEKYSNKKYDNNLYFESKKDSEKVFINKCFSVIIDHFKAVIFA 300

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I+DG LP+N+ RGY+LR+++RR+  Y   L  +      ++  + +   + YP L +   
Sbjct: 301 ISDGALPSNKDRGYILRKLLRRSFLYLNYLKVSFENSKEIINTIISNNETYYPYLKENLN 360

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI---MQ 402
            +  T++ E + + ++++     L+ +L+    D        F L  T+G P++I   +Q
Sbjct: 361 NVINTIKLEYDLYCESINNSFKKLNELLNKKLLD----ASDLFNLVTTYGFPIEIVQSLQ 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++L     A       N  L E    +   S    S +  KI F   EK      +  + 
Sbjct: 417 ELLTQSKDAK------NLKLAEDIINSINPSDKKISISKLKIEFDEFEKLFDEHRLIANA 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGV-------SSIVKAIVQQGEIVEEAVSGQKVEVVF 515
               K M+   + L   P +D +          S ++K   +  + VEE +  +   V+ 
Sbjct: 471 NASVKGMENQNEELLNLPTLDSSFDYEIESVKNSKVLKIFDENWKPVEE-IKNKDCWVIL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T F+A  GGQ  DTG  I    +  + DV K  +G  +H  +  +G  +    +   I
Sbjct: 530 DKTCFFATTGGQEHDTG-KIN---KFDVVDVIKSPQGYHLHKVV--KGTFKIGEKVDGQI 583

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  +R  +   HS+ HL+H AL  ++   + Q G+  + + +  D + ++ +T  E+  +
Sbjct: 584 NSFDRNIIRKQHSSEHLMHSALKRVVSPTIKQEGAFKSIEKITLDFSFNRKLTYKEILGV 643

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSA 692
           E  V  IIA   P    +   ++A   GA       Y     ++RV+ +  E     S  
Sbjct: 644 EKEVKRIIATKNPTQVLMKTLDEAKEMGAIGYFEQVYKKISGKLRVLYLCPE-----SIE 698

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           +CGGTHV +TG+I    +   +S  +G  RIEA++     ++L+   +K K+        
Sbjct: 699 ICGGTHVYNTGDIEDFMVTGLTSKGSGSWRIEAVSS----NYLV---DKFKN-------- 743

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED--LSCHKIADVNFMSHIISEVDSKELK 810
             NV+ +  + +  Y        K+  +LN++D  +  +K  D+N + ++       ELK
Sbjct: 744 --NVIKKAIDDFNNY-------FKKYKELNIKDDEVEKYKKTDINSIHYL-------ELK 787

Query: 811 SVMDALQKKIQSGII 825
            + + L+ KI + +I
Sbjct: 788 EINEILKNKINTLVI 802


>gi|255527855|ref|ZP_05394703.1| alanyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255508466|gb|EET84858.1| alanyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 662

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 238/698 (34%), Positives = 389/698 (55%), Gaps = 57/698 (8%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIV 276
           L   +IDTGMGLER+AT++Q   + +++D  + ++    +V  ++Y  +  + ++ RVI 
Sbjct: 1   LKNPNIDTGMGLERIATIMQGTNSIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVIT 60

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+RS SF+I+DGILP+NEGRGYVLRR++RRA  + + LG     +  L   +       
Sbjct: 61  DHVRSVSFMISDGILPSNEGRGYVLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGN 120

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTH 394
           Y EL + +  I++ ++ E+ERF +T+D G+ +L+  + +L    + IL+G+ AFKLYDT+
Sbjct: 121 YAELAEKRDYIKKVIKLEEERFDETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTY 180

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLK 449
           G P+++ ++IL  + +  +D+  FN+ ++ QR RAR      + +G       KI   ++
Sbjct: 181 GFPIELTEEILEEKDMK-VDLEGFNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIE 239

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
                T+F GYD L                         +S VK +++  E V   V G 
Sbjct: 240 -----TKFNGYDTLH-----------------------TTSKVKILIKNEEFVSTMVEGD 271

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K  +V + TPFYAE GGQ+GD G    D  + ++ D +K   G  +H   V  G +  + 
Sbjct: 272 KGVIVTENTPFYAEMGGQIGDHGIISTDSFKAEVVDCKKNVAGKILHFVKVLSGTIGVDH 331

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L ++   R  +  NH+ATHLL+ AL  +LG HV Q+GS +  + LRFD  H +  + 
Sbjct: 332 QVTLNVNEARRNNIRRNHTATHLLNEALRKVLGEHVHQSGSYVDDERLRFDFNHFEAPSH 391

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            ELK +E  VND I + L V T+ M+ E+A  +GA AL   KY D VRVVSV     G  
Sbjct: 392 EELKKVEALVNDEIVKVLNVQTQSMSLEEAKETGAIALFDNKYKDEVRVVSV-----GDF 446

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTHVS++GEI L  I+SE+ + AGIRRIEA+TG +A +++  +++ +K + + L
Sbjct: 447 SKELCGGTHVSNSGEIGLFKIISEAGVAAGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKL 506

Query: 750 KVSQGNVVGRVE----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIIS 802
           + S+  ++ +++    E+ E+ +  ++   K KL  + ED       ++  +   + ++ 
Sbjct: 507 RCSEKEIIHKLDLQALELKEKDK--EIAELKSKLAGSAEDEILNGFQEVKGIKLFTGVLK 564

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +VD   L+ + D ++ K    +++L G   E K   + + T++ + +   V   ++  +V
Sbjct: 565 DVDGNALRDLADKIRNKGGECVVVL-GSVVEGKVQFVSMTTKEAIAK--GVHCGKIIKEV 621

Query: 863 --LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             + GGGGGGRP MAQ+GG    K + AI    S L+K
Sbjct: 622 AAIAGGGGGGRPDMAQAGGKLPEKVEDAIGSCVSILEK 659


>gi|77405530|ref|ZP_00782621.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77175837|gb|EAO78615.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 658

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 238/696 (34%), Positives = 369/696 (53%), Gaps = 64/696 (9%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIV 276
           LP  +IDTG GLER+A V+Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI 
Sbjct: 9   LPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIA 67

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG  E  +   +P +   M S 
Sbjct: 68  DHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKXVPTVGQIMESY 127

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDT 393
           YPE+++ +  IE+ ++ E+E F +T+D G   LD +L+ L   GKD +   D+ FKLYDT
Sbjct: 128 YPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDI-FKLYDT 186

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSL 448
           +G P+++ +++    G   ID   F  A++EQ+ RARA      S+G+ + T   I    
Sbjct: 187 YGFPVELTEELAEDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGIVEES 245

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +  YGA                               + + S +  I+   E  E    G
Sbjct: 246 RFDYGA-------------------------------DSLESNLSVIIADNERTEAVSEG 274

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILR 566
           Q + +VF QTPFYAE GGQ+ D G    D      ++ DVQK   G  +H   V    L 
Sbjct: 275 QAL-LVFAQTPFYAEMGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLS 332

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              +  L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + 
Sbjct: 333 VGTNYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEA 392

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +++ EL+ IE  VN+ I  +L + T   + E A   GA AL G KY   VRVV +     
Sbjct: 393 VSNEELRHIEQEVNEQIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI----- 447

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G +S  LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A
Sbjct: 448 GNYSVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIA 507

Query: 747 SFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHI 800
           + +K  Q  +   +V+ + +  R LQ  + + K +              +   V F++  
Sbjct: 508 ATVKAPQLKDAAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQ 567

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +   D+  L++  D  ++K  S +++LV    EK   ++   T+D+    +A ++ +  A
Sbjct: 568 VDVADAGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLA 623

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++  G GGG+P MA +GG + +K  + +A VA  L
Sbjct: 624 PIV-AGRGGGKPDMAMAGGSDASKIAELLAAVAENL 658


>gi|223986202|ref|ZP_03636221.1| hypothetical protein HOLDEFILI_03531 [Holdemania filiformis DSM
           12042]
 gi|223961839|gb|EEF66332.1| hypothetical protein HOLDEFILI_03531 [Holdemania filiformis DSM
           12042]
          Length = 515

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 273/437 (62%), Gaps = 18/437 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  FL++FQ  GH + P +SLIP NDPTL++ N+G+   K  F G EKP    +   
Sbjct: 49  NQVRQMFLDYFQSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPACNRIANA 108

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT       D+
Sbjct: 109 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKADAIPFAWEFLTSPEWIGFDK 164

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY +DEEA+++W ++ G+    I++  T DNFW + E GP GP SEIF+D+GE 
Sbjct: 165 NKLYVTVYPDDEEAYRIWTEVCGVDPSHILK--TADNFWEIGE-GPGGPDSEIFYDRGEK 221

Query: 183 I-PGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGMGLERMA 234
             P GL         E +RYIE+WN+VF QF+ +   +R +   LP  +IDTGMGLER+ 
Sbjct: 222 YDPEGLGEKLFFEEMENDRYIEVWNVVFSQFDCRPGTDRKLYKELPHKNIDTGMGLERLV 281

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +++QE   N+D DLF  +I+A+E++    YEG   + +RVI DH+R+ +F ++DG + +N
Sbjct: 282 SIIQEGETNFDTDLFLPIIRAAEKLAKHPYEGEYKMAYRVIADHIRTVTFALSDGAMFSN 341

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ Y   LG     M  L+  +   M   YP L++    + + +++E
Sbjct: 342 EGRGYVLRRVLRRAVRYGIKLGINGAFMYKLVDVVADNMKDFYPYLLEKTEFVAKLVKNE 401

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F  TL  G  LL+  L+     + L+G+V FKLYDT+G PL++ ++I   RG   ID
Sbjct: 402 EEAFHSTLANGEKLLNEELAKAEAAKTLSGEVVFKLYDTYGFPLELTKEIAGERGYT-ID 460

Query: 415 IISFNQALEEQRSRARA 431
              F   + +QR RARA
Sbjct: 461 EEGFEAQMAKQRERARA 477


>gi|168704593|ref|ZP_02736870.1| alanyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 436

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/430 (43%), Positives = 269/430 (62%), Gaps = 22/430 (5%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           M + S IR  F++FF +K+GH  + SS ++P NDPTL+F N+GM  FK  F G EKP   
Sbjct: 1   MLSSSEIRQQFVDFFCKKHGHTNIASSPVVPLNDPTLLFANAGMNQFKPYFLGTEKPPVV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + 
Sbjct: 61  RVANTQKCIRAGGKHNDLDDVGRDTYHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWK 120

Query: 120 LDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD  RL++TV++         D+EA   WK + G+  ++I      DNFW M  TGPCGP
Sbjct: 121 LDPTRLHVTVFEGDPANGIPRDDEAAGFWKAV-GVPEERIHLGNKKDNFWEMGNTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI  D+     GG P  +   ++ IEIWNLVF+QF +   Q    LP   +DTGMG E
Sbjct: 180 CTEIHIDRTPDKSGG-PLVNGGTDKVIEIWNLVFIQFNRNEDQSLTPLPAQHVDTGMGFE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEG--NNIVN--HRVIVDHLRSSSFL 285
           R+ +V+Q K++NYD D+F  L +A ++VT     Y G  N++ +  +RVI DH+R+ +F 
Sbjct: 239 RICSVVQGKSSNYDTDVFTPLFEAIQKVTLCDRPYGGDLNDLKDTAYRVIADHIRTLTFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           + DG    N GR YVL+RI+RRA  Y  ++LG  EP +  L+  +    G+A+PEL +  
Sbjct: 299 LTDGATIGNVGRDYVLKRILRRAERYGYQVLGTNEPFLYRLVDTVVEHFGAAFPELKKNP 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIM 401
             +++ +R E+  F +TL RG+ L + + + + KDE    ++G  AFKL+DT+G+ +DI 
Sbjct: 359 HKVKDQIRDEEAAFLRTLRRGITLFNRIAAQM-KDEGRTQVSGKEAFKLHDTYGVIIDIT 417

Query: 402 QDILCARGLA 411
             +   +GL 
Sbjct: 418 LQMAQEQGLT 427


>gi|289677327|ref|ZP_06498217.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 453

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 202/486 (41%), Positives = 280/486 (57%), Gaps = 36/486 (7%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E+G+RYIEIWN VFMQF +        LP  S+DTGMGLER++ VLQ   +NY+IDLF+ 
Sbjct: 3   EDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVSAVLQHVHSNYEIDLFQS 62

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+NEGRGYVLRRI+RRA  +
Sbjct: 63  LLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRH 120

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E+E+F KTL++GL +L+ 
Sbjct: 121 GNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGEEEQFAKTLEQGLKILEQ 180

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR- 430
            L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D   F + ++ QR RAR 
Sbjct: 181 DLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LDEAGFEREMDAQRVRARS 238

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
           A S G+   +  K+         ATQF GY                        T G +S
Sbjct: 239 ASSFGMDYNSLVKVDV-------ATQFTGY----------------------SATTGSAS 269

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
           +V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G       R  ++D  K  
Sbjct: 270 VV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGFLQAGDARFDVSDTTKTG 328

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G F+HH +V  G L     +   +  + R    +NHSATHLLH AL  +LG HV Q GS
Sbjct: 329 -GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLLHAALRQVLGEHVQQKGS 387

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +    LRFD +H + I   +L+++ED VN  I +N  V+T   + + A   GA AL G 
Sbjct: 388 LVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEETDIDTAKKKGAMALFGE 447

Query: 671 KYNDRV 676
           KY D V
Sbjct: 448 KYGDSV 453


>gi|298500953|ref|ZP_07010754.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Vibrio cholerae MAK
           757]
 gi|297540201|gb|EFH76261.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Vibrio cholerae MAK
           757]
          Length = 551

 Score =  347 bits (890), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 225/597 (37%), Positives = 330/597 (55%), Gaps = 56/597 (9%)

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR E+E FG+TLD
Sbjct: 3   IIRRAVGHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRIEEENFGRTLD 62

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + ID   F QA+E
Sbjct: 63  RGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAME 120

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RAR       +G     + SL +    T+F GY   RG                  
Sbjct: 121 EQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRGQ----------------- 157

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG    D     +
Sbjct: 158 ------SVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHV 211

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLLH AL  +LG 
Sbjct: 212 EDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGE 270

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T IMN ++A A G
Sbjct: 271 HVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNIMNIDEAKAKG 330

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE  I AGIRRI
Sbjct: 331 AMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRI 385

Query: 724 EAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           EA+TG+ A  +L  Q    D K+  +A+  K+ +       +EI +   KL    AK   
Sbjct: 386 EAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDKLA---AKESA 435

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            L  +     +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML  ++ E K  ++
Sbjct: 436 GLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGNVA-EGKVGLI 491

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  V +++
Sbjct: 492 AGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALESVDAWI 547


>gi|300121459|emb|CBK21978.2| Alanyl-tRNA synthetase [Blastocystis hominis]
          Length = 877

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 241/783 (30%), Positives = 385/783 (49%), Gaps = 70/783 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL++F    H ++P SS+IP +DP+L+F N+GM  FK  + GQ  P  + VTT Q 
Sbjct: 31  LRDQFLQYFASKNHTIVPGSSVIPKDDPSLLFVNAGMNQFKKYYLGQAVPEVRRVTTSQL 90

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLDN+G T RH T FEMLGNFS G Y+K+ AI +A++ ++K   +    L 
Sbjct: 91  CIRAGGKHNDLDNIGFTPRHQTMFEMLGNFSLGDYYKDEAISMAYEFVSKVLQIPNSHLR 150

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFDQGECIPG 185
           ++++++D+ A  +WK I+G    +I+     DN WSM  +  P G CSE+FF        
Sbjct: 151 VSIHEKDDSARSIWKSIAGFQDSQIVSRGNKDNLWSMGSSDSPSGFCSELFFTTD----- 205

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--ILPKMSIDTGMGLERMATVLQEKTNN 243
             P S+ +   ++EIWNLVFM  + + +   F  IL    IDTGMG ERM +VL    +N
Sbjct: 206 --PFSTYDN--WLEIWNLVFMNTQSKVRSLFFSLILKGGWIDTGMGCERMLSVLNGVPSN 261

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           ++ D+F  ++ + +     ++   +  +  +  DHLR +S ++A+ I+P+++GRGYVLR+
Sbjct: 262 FETDVFTGILSSIQ----ARFPSLSSSHAHIFADHLR-TSVVLANEIVPSSKGRGYVLRK 316

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I RR + +A L     P +  L+PA+   + +  PEL   +  IE  L  E+E F + + 
Sbjct: 317 IFRRMLRFAYLNHIDYPFVSELIPAVIQALHAQLPELAGNQEKIERILGMEEEFFWRAVA 376

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G  L   V S   K     G+   +L    GLPLD+++ +   + +  ++  + +Q L+
Sbjct: 377 EGKKL---VASKAKKVGFFGGETLRQLRADTGLPLDMVETLFQEKKIT-VESEASDQLLQ 432

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           E+    R           EK W    E   + +F G                  Q   ++
Sbjct: 433 EEMENERM-------AQVEK-WGIPPESQWSGRFAG------------------QTVEME 466

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
               +SS    + Q+ +I   + SG    VV D+ PF+    GQ GD G  + +G  + +
Sbjct: 467 KLTSLSS----VSQKAKIQAISKSGNVEFVVLDRCPFFPTQAGQEGDRGVVVWNGREIGV 522

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  K  + I ++        L +E+  V  ID ++R+ ++ +HSATHLLH  L  + G 
Sbjct: 523 MDTIKHGQTI-INVLPASNLPLNSEVECV--IDLRHRQAVARHHSATHLLHACLGELSGV 579

Query: 604 HVS-QNGSCITPDGLRFD-----VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
           H S Q GS IT     FD     +T       A ++ +E  +N      +PV       +
Sbjct: 580 HQSLQAGSHITEKEFSFDFYTGFLTPLLKSPQAFIELVESKMNAAARAEIPVKRVDFTAK 639

Query: 658 DAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           D         +G     ++  +    +S+     G  S   C G HV+++G++  + I  
Sbjct: 640 DLETVPKGTFIGDISHISQSENVFHTISI-----GNLSREFCCGQHVANSGDLFPVVISG 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
             SI AGI+RI    G  A   L  Q   L  L      S+  +V + E +  + + L+ 
Sbjct: 695 VQSISAGIKRITGKAGMAASEVLFEQHRTLNQLLGSFACSEKEIVKKAEGLQSQVKSLEQ 754

Query: 773 IHA 775
             A
Sbjct: 755 TKA 757


>gi|73957020|ref|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) isoform 3 [Canis familiaris]
          Length = 852

 Score =  343 bits (879), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 240/685 (35%), Positives = 357/685 (52%), Gaps = 57/685 (8%)

Query: 109 LAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNF 160
           +A +LLT+EF +   RLY+T +  DE        E  ++W+ + GL   KI+     DNF
Sbjct: 1   MALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNF 59

Query: 161 WSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERF 217
           W M +TGPCGPCSEI +D+     GG   +   +++    +EIWNLVF+Q+ +++     
Sbjct: 60  WEMGDTGPCGPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILK 115

Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN----- 271
            LPK SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG + Y G    +     
Sbjct: 116 PLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGI 175

Query: 272 ---HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLP 327
              +RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+ 
Sbjct: 176 DMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVD 235

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
            +   +G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A
Sbjct: 236 VVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTA 295

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           + LYDT+G P+D+   I   +G+  +D+  F    EE+R  A+  S G G+G  + I   
Sbjct: 296 WLLYDTYGFPVDLTGLIAEEKGMV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLD 350

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           +     A + +    L  ++   +              N V+++V A+ +    VEE  +
Sbjct: 351 IY----AIEELREKGLEATEDSPKYNYHSDSSGSYTFENVVATVV-ALRRDKMFVEEVST 405

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERG 563
           GQ+  VV D+T FYAE GGQ+ D G  +        +++ T    +  G +V H     G
Sbjct: 406 GQECGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYG 465

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            LR    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T 
Sbjct: 466 SLRVGDQVRLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTA 524

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE 682
              +++ ++K  E+  N +I    PV T+      A A  G  A+    Y D VRVVS+ 
Sbjct: 525 KGAMSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIG 584

Query: 683 ------YED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                  ED     G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A
Sbjct: 585 VPVSELLEDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEA 644

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNV 756
           +  L     K +SL + L V +  V
Sbjct: 645 QKAL----RKAESLKNSLSVMEAKV 665


>gi|149002767|ref|ZP_01827693.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759061|gb|EDK66055.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 449

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/459 (41%), Positives = 277/459 (60%), Gaps = 26/459 (5%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT   
Sbjct: 61  PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD    +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIF
Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE       GL   +E  E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+  V+Q    N++ DLF  +I   E+++G  Y+  G+N+ + +VI DH+RS SF I
Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I
Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
               G+  +D   F  A++EQ+ RARA ++  GS   +K
Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQK 449


>gi|324509264|gb|ADY43900.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 603

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 315/581 (54%), Gaps = 53/581 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58
           + +R+ F+ FF    H  + SSS+IP  DPTL+F N+GM  FK IF G   P      + 
Sbjct: 8   NEVRSAFINFFANREHTYVHSSSVIPFEDPTLLFANAGMNQFKPIFLGTVDPSSELGRLR 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +AV T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLTKE 
Sbjct: 68  RAVNT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCNWAWELLTKEL 126

Query: 119 DLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   +LY++ +  DE      D+E  ++W  I GL   +++     DNFW M + GPCG
Sbjct: 127 GIPADQLYVSYFGGDEKAGLAPDDECRQIWLDI-GLPESRVLPFGMKDNFWEMGDVGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSEI FD+ G      L  + +     +EIWNLVFMQ+ ++       LP   ID G+G
Sbjct: 186 PCSEIHFDRVGNRDASALVNADD--PMVVEIWNLVFMQYNREEGGVLRELPMRHIDCGLG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQA----------SEQVTGMKYEGNNIVNHRVIVDHL 279
           LER+  V+Q KT+NYD D F  +  A          S +V     +G ++  +RV+ DH+
Sbjct: 244 LERLVAVMQNKTSNYDTDAFTPIFDAIQASVCVRAYSGKVGAEDSDGIDMA-YRVVADHI 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+    ++DG  P + GRGYVLRRI+RR + YA   LG        L+P +   +G  +P
Sbjct: 303 RTLCVALSDGGRPDSTGRGYVLRRILRRGVRYANEKLGAPPGFFASLVPVVVRLLGDTFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397
           EL +    + + +  E+ +F KTL+RG  L    ++ L  + +   GD+A++LYDT+G P
Sbjct: 363 ELRKDPETVMDIINDEEAQFLKTLNRGRSLFQKAVAALESEAKQFPGDIAWRLYDTYGFP 422

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-EKYGATQ 456
           +D+ Q ++       +D+ +F Q         R  ++ + S    K   + + + +G  +
Sbjct: 423 VDLTQ-LMAEEKQLSVDMDAFEQ--------CRQKAVEMSSAGANKFRDTAELDVHGIAK 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI-----VKAIVQQGEIVEEAVSGQKV 511
                +       K D   +    P D+T   S       V A++++G  V+   SG K 
Sbjct: 474 LKKDGVPSTDDSPKYDYSAVG---PNDITAKYSFAKCEGQVLALLKEGTFVDSLYSGDKG 530

Query: 512 EVVFDQTPFYAEAGGQLGDTGC--AIGD-GIRLQITDVQKK 549
            V+ D+T FYAE GGQ+ DTG    IGD G   ++++VQ +
Sbjct: 531 AVILDRTNFYAEQGGQIYDTGVLTKIGDEGAEFEVSNVQMR 571


>gi|14041674|emb|CAC38773.1| alanyl-t-RNA synthetase [Rhizobium tropici]
          Length = 232

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 160/231 (69%), Positives = 192/231 (83%), Gaps = 1/231 (0%)

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           EF LD +RL +TVY  D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF
Sbjct: 1   EFGLDAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIATSDNFWAMGDTGPCGPCSEIF 60

Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G+ I GG PGS EE G+R+IEIWNLVFMQFEQ  K++R  LP+ SIDTGMGLER+A 
Sbjct: 61  YDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKEQRVDLPRPSIDTGMGLERVAA 120

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ K +NYDIDLF+ LI+ASE+ TG+K EG +  +HRVI DHLRSS+FLIADG+LP+NE
Sbjct: 121 VLQGKHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNE 180

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           GRGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ L
Sbjct: 181 GRGYVLRRIMRRAMRHAQLLGAKEPLMWKLLPALIQQMGRAYPELVRAEAL 231


>gi|17536681|ref|NP_496444.1| Alanyl tRNA Synthetase family member (ars-1) [Caenorhabditis
           elegans]
 gi|74966572|sp|Q23122|SYAM_CAEEL RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=AlaRS B; AltName: Full=Alanine--tRNA ligase; Flags:
           Precursor
 gi|6176436|gb|AAF05590.1|AF188715_1 alanyl-tRNA synthetase [Caenorhabditis elegans]
 gi|14530594|emb|CAA91396.2| C. elegans protein W02B12.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 793

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 244/768 (31%), Positives = 385/768 (50%), Gaps = 90/768 (11%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           S +R +F EFF+   HE+L SSS+IP  ND TL+FTN+GM  FK +     +   + V  
Sbjct: 25  SELRKSFYEFFKSKNHEILRSSSVIPDENDGTLLFTNAGMNQFKPLILSSTES--RRVAN 82

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQ 122
           +QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AW+ L +   ++ 
Sbjct: 83  IQKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACRYAWEYLVEILGINA 142

Query: 123 RRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY++ +         ED E  ++WK+I G+S+++I+     +NFW M   GPCGPC+E
Sbjct: 143 DRLYVSYFGGIEKLGLPEDRECREIWKRI-GVSSNRILPFVA-ENFWEMGAAGPCGPCTE 200

Query: 175 IFFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           I +D+     GG   S      +  +EIWN+VFM   + +  +   L K  IDTGMG ER
Sbjct: 201 IHYDR----IGGRDASRLVNIDDSVVEIWNIVFMSSVRDSCGQIRHLGKNHIDTGMGFER 256

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIAD 288
           + +V+Q KT+N+D D+F  +++ + ++   +Y G+         R++ DH+R+++  I+D
Sbjct: 257 LLSVVQNKTSNFDTDVFTPILEKTSELAKKQYTGSLDSRQDATFRLVADHIRAATVAISD 316

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G +P   G G+++R++MRRA       LG     M  L+P + + M   YPE+      I
Sbjct: 317 GAVPDGTGCGFIVRKMMRRAFLQGISKLGIERYAMSELVPVVASTMKEVYPEIHDTSTHI 376

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +    E+ +F KT+D+   + D V +   K  I++G  AF L++THGLPL +  ++  A
Sbjct: 377 RKIFNDEEAQFWKTVDKAKKMFDSVAAE-SKSPIISGRKAFNLFETHGLPLAVTVEL--A 433

Query: 408 RGLA-GIDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           R +   +D   F +  LE Q+   +A    L     +    S KEKY         + R 
Sbjct: 434 RNIGREVDETEFERCRLEAQKVSQKASQFKLPISADDFPSHSDKEKYSY-------VFRN 486

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
            K+         + P       V + +  + +  +  E   +  +  +V ++  FY E G
Sbjct: 487 GKY---------EFPQ------VKTRILQVYKDQQKAESLEANDRGFLVLEECQFYGEQG 531

Query: 526 GQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGIL--RTEMSLVLTIDYQNRRQ 582
           GQ  DTG  + DG  + ++ + +K A G      +  R +L  R ++ +   +D   R  
Sbjct: 532 GQTSDTGHLLIDGREVFEVENAKKIAGGAVT--VLFGRALLPIRRDLRVEQKLDETRREG 589

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT----------HSKPITSAEL 632
           +   HSATHLL+ AL   LG    Q GS +  D  RFD +           ++ +   E+
Sbjct: 590 VMRAHSATHLLNWALQK-LGVGSGQKGSSVDCDRFRFDYSTGDEDLSKEQRTELLIKCEM 648

Query: 633 KSIE----DNVNDIIAQNLPVVTRIMN-----REDAIASGAAALLGTKYNDRVRVVSVEY 683
           K  E        +II  +L    +I N     +ED I   +           VRVV++  
Sbjct: 649 KMREFIQNGGFTEIIETSLEEAKKIENLQSDVKEDRIGGAS-----------VRVVAL-- 695

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             G       C GTH+     I  + I+S+ S+   +RRI  +TG+ A
Sbjct: 696 GSGADVPVECCSGTHIHDVRVIDDVAIMSDKSMGQRLRRIIVLTGKEA 743


>gi|292558550|gb|ADE31551.1| Alanyl-tRNA synthetase, class IIc [Streptococcus suis GZ1]
          Length = 512

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 199/507 (39%), Positives = 297/507 (58%), Gaps = 34/507 (6%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172

Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G     E I   L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+  G+N+ + +VI DH+R+ SF I
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  
Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           IE+ ++SE+E F +T+  G    + ++  L   GK EI   D+ FKLYDT+G  +++ ++
Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFI 458
           +   RG+  +DI  F  A++EQ+ RARA  +  GS G   + W  L +K    + A Q +
Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETWL-LSQKSRPLFMAKQLL 468

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLT 485
               L     M+  ++    KP + LT
Sbjct: 469 KQAYLSLWLIMRVQKQSQKVKPSLSLT 495


>gi|308509732|ref|XP_003117049.1| CRE-AARS-1 protein [Caenorhabditis remanei]
 gi|308241963|gb|EFO85915.1| CRE-AARS-1 protein [Caenorhabditis remanei]
          Length = 810

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 254/816 (31%), Positives = 403/816 (49%), Gaps = 75/816 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +R +F EFF+   HE+L S+S+IP  ND +L+FTN+GM  FK +     +P  + V  +Q
Sbjct: 16  LRKSFFEFFKSKNHEILKSASVIPAENDSSLLFTNAGMNQFKPLILSSSEP--KRVANIQ 73

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQRR 124
           KC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F K+ A Q AWD L K   +D  R
Sbjct: 74  KCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKQEACQFAWDYLVKTLSIDSDR 133

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY++ +         ED E  ++WK+I G+ +D+I+     +NFW M   GPCGPC+EI 
Sbjct: 134 LYVSYFGGIERLGLPEDRECREIWKRI-GIPSDRILPFVA-ENFWEMGSAGPCGPCTEIH 191

Query: 177 FDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +D+     GG   SS     +  +EIWN+VFM   + +      L K  IDTGMG ER+ 
Sbjct: 192 YDR----IGGRNASSLVNIDDSVVEIWNIVFMSNIRDSSGHIHNLGKNHIDTGMGFERLL 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH------RVIVDHLRSSSFLIAD 288
           +V+Q + +N+D D F  ++     +T  K + N  ++       R++ DH+R+++  I+D
Sbjct: 248 SVVQNRNSNFDTDAFTPILDKITSLTKNKLKYNGTLSSREDAVFRLVADHVRAATVAISD 307

Query: 289 GILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM----------GSAY 337
           G +P   G G+++R++MRR+       LG     +  L+P + + M             Y
Sbjct: 308 GAIPDGTGSGFIVRKMMRRSFLQGNSKLGIERFGLSDLVPVVISTMVPFLVRITSDKEVY 367

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ ++   I +T + E+ +F KT+D+   + DGV +   K  +++G  AF L++THGLP
Sbjct: 368 PEIEKSSNEIIKTFKDEETQFWKTVDKAKKMFDGVANE-NKSPVISGRKAFNLFETHGLP 426

Query: 398 LDIMQDILCARGLAG-IDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           L +  ++  AR +   +D   F +  LE Q+   +A  L L    ++    +  +KY  T
Sbjct: 427 LSVTVEM--ARNIGKEVDEKEFERCQLEAQKLSQKASQLKLPVSASDFPTHTDNDKYSYT 484

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
              G    +   F   +   L  + P      V + +  + +  E        +K  VV 
Sbjct: 485 YKNGR-YGKSISFTLTNFNYLFLEFP-----KVQTRILEVYKNQEKANCLNENEKGFVVL 538

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG----IFVHHAI--VERGILRTEM 569
           +   FY E GGQ  DTG  + D   +   +  KK E     +    A+  ++R  LR E 
Sbjct: 539 ENCQFYGEQGGQTSDTGKLLIDKKEIFEVESAKKLENGAVTVLFGRALQPIQRD-LRVEQ 597

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L    D + R  +   HSATHLL+ AL    G    Q GS +  + LRFD +    +  
Sbjct: 598 QL----DEKKREGVMKAHSATHLLNWALQK-SGLGCGQKGSSVDCNRLRFDYSTKDDVME 652

Query: 630 AE-----LKSIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAALLGTKY-NDRVRVVSV 681
            E     LK  E+ +N+ I      +      E+A  I +  + +   +  N  VRVVS+
Sbjct: 653 KEQRSEVLKQGEERMNEFIRHGGETIILETTIEEAKKIENLQSDVKEDRIGNSTVRVVSL 712

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G       C GTHV     I  + I+S+ S+   +RRI A+TG+ A+      +  
Sbjct: 713 GI--GRDVPVECCSGTHVHDVKVIEDIAIMSDKSMGQRLRRIIAVTGEEAQKCREYAETS 770

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            K L S     +  +  ++     +++++ L+   R
Sbjct: 771 YKDLKSKEPKERSKIAKKI-----DWKRVPLVDQSR 801


>gi|268531970|ref|XP_002631113.1| C. briggsae CBR-ARS-1 protein [Caenorhabditis briggsae]
          Length = 796

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 244/759 (32%), Positives = 389/759 (51%), Gaps = 72/759 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +R +F +FFQ   HE++ S+S+IP  ND +L+FTN+GM  FK++     +P  + V  +Q
Sbjct: 27  LRKSFFDFFQSKKHEIVKSASVIPLENDGSLLFTNAGMNQFKSLILSSTEP--RRVANIQ 84

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQRR 124
           KC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AWD L +   +D  R
Sbjct: 85  KCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACKFAWDYLVEVLGIDSER 144

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY++ +         ED E  ++WK I G+ + +I+     +NFW M   GPCGPC+EI 
Sbjct: 145 LYVSYFGGIEKLGLPEDRECKEIWKNI-GVPSHRILPFVA-ENFWEMGAAGPCGPCTEIH 202

Query: 177 FDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +D+     GG   SS     +  +EIWN+VFM   + +  + + L +  IDTGMG ER+ 
Sbjct: 203 YDR----IGGRDASSLVNIDDSVVEIWNIVFMSNVRDSSGKIYNLGRNHIDTGMGFERLL 258

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNH----RVIVDHLRSSSFLIAD 288
           +V+Q K +N+D D+F  ++     +T   +KY G+         R++ DH+R+S+  I+D
Sbjct: 259 SVVQNKNSNFDTDVFIPILAKISSLTKKNLKYNGSVSSQEDAVFRLVADHVRASTIAISD 318

Query: 289 GILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G +P   G G+++R++MRR+       LG     +  L+P + + + + Y E+ ++   I
Sbjct: 319 GAIPDGTGNGFIVRKMMRRSFLQGNSKLGIDRFGLSDLVPTVISTLKNVYSEVEKSSDKI 378

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
               + E+ +F KT+D+   + D V ++  K   ++G  AF L++T+GLPL +   I  A
Sbjct: 379 INIFKEEETQFWKTVDKAKKMFD-VGANENKSSTISGRKAFNLFETYGLPLSVT--IEMA 435

Query: 408 RGLAG-IDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           R L   +D   F +  LE Q+   +A    L     +    S KEKY       Y    G
Sbjct: 436 RNLGKEVDEKEFERCQLEAQKLSQKASQFKLPVFAKDFPTHSDKEKY------SYSFENG 489

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                  R    + P         + +  + Q  E V      +K  VV ++  FYAE G
Sbjct: 490 -------RYAFSKVP---------TTILQVYQNQEKVVVLKENEKGFVVLERCQFYAEQG 533

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQNRRQL 583
           GQ  D G  + DG  +   +  KK +   V   +  R +  ++ ++ +   +D + R  +
Sbjct: 534 GQKSDIGKLLADGRNVFEVESAKKLDNGSV-TVLFGRALEPIQKDLRVEQQLDEKRREGV 592

Query: 584 SINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTH-----SKPITSAELKSIED 637
              HSATHLL+ AL  + LG+   Q GS +  + LRFD +       K   +  LK +E 
Sbjct: 593 MKAHSATHLLNWALQRSGLGN--GQKGSSVDCNRLRFDYSTGDDSLDKSQRTEALKHLEH 650

Query: 638 NVNDIIAQN--LPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA-L 693
            +N+ I +     V+   +     I +  + +   +  D  VRVV++     GV+ S   
Sbjct: 651 ILNEFIMKGGLTSVIETTLEEAKKIKNLQSDVKEDRIGDSSVRVVTL---GSGVNVSVEC 707

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           C GTHV     I  + I+S+ S+   +RRI A+TG+ A+
Sbjct: 708 CSGTHVHDVSIIEDVAIMSDKSMGQNLRRIVAVTGEEAK 746


>gi|194223559|ref|XP_001497842.2| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial (putative)
           [Equus caballus]
          Length = 962

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 249/806 (30%), Positives = 399/806 (49%), Gaps = 120/806 (14%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 42  FLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 101

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 102 QKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPEE 161

Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +        D D E+  +W ++ G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 162 RLWVSYFSGDPKVGLDPDLESRDIWLRL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 220

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    + GG+ G+ E     +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 221 HYD----LAGGV-GTPE----LVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 271

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ + + YD DLF  L+ A  QV+ +       ++ RV       +  +    + P+  
Sbjct: 272 VLQGRRSTYDTDLFSPLLSAIHQVS-LPIRFQKPLDLRVT-----GAPGVCIWALSPSRL 325

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
               +LRR +R +   + +L      +  L+P +   +G AYPEL +    I   +  ++
Sbjct: 326 VLRRILRRAVRFS---SEVLRAPPGFLGSLVPVVVETLGDAYPELQKNSAQIASLVSEDE 382

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLPLDIMQDILCARGL--- 410
             F  +L RG  ++D  +  LG   +   +VA+   L    GLPLD+++ +L  +G+   
Sbjct: 383 AAFLASLQRGRRIIDRTVRRLGPSHVFPAEVAWSLSLSGNLGLPLDLVELMLEEKGVQLD 442

Query: 411 -AGIDIISFNQA---------LEEQRSRARAHSLG----LGSGTTEKIWFSLKEKYGATQ 456
            AG+  ++  +A         ++EQ  +   H+LG     G   T+    S K  Y    
Sbjct: 443 SAGLAQLAQEEAQRRAQQAEPIQEQGLQLDVHALGELQRRGVPPTDD---SPKYSYSLQP 499

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             GY+   G+          C+          + +++   + G  V     GQ+  ++ D
Sbjct: 500 GGGYEF--GT----------CE----------AQVLQLYTEDGRAVASVGEGQRCGLLLD 537

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDV-----QKKAEGIFVHHAIVERGILRTEMSL 571
           +T FYAE GGQ  D G      +R++  DV     + +  G F+ H  V    L+    +
Sbjct: 538 RTNFYAEQGGQASDRGYL----VRVEQQDVLFPVARAQVCGGFILHEAVAPECLKVGDQV 593

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   R      H+A HLL+ AL   LG    Q GS + P+ LR DV    P+T  +
Sbjct: 594 QLHVDKAWRLGCMEKHTAIHLLNWALRQALGPGTEQRGSHLNPEHLRLDVATQAPLTPEQ 653

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED------ 685
           L+++E  V + + Q+           +A+     AL  T +   +R +   Y D      
Sbjct: 654 LQAVEGIVQEAVGQD-----------EAVYMEEVALACTAHVPGLRSLDEIYPDPVRVVS 702

Query: 686 --------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                           + +S  LC GTH+  TG +  L IV E  +  G  R+ AITG++
Sbjct: 703 VGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIVGERQLTKGTTRLLAITGEQ 762

Query: 731 A-RSHLMGQDEKLKSLASFLKVSQGN 755
           A ++  +GQ    +  A+  ++S+G+
Sbjct: 763 AQQAREVGQSLAQEVEAAAERLSRGS 788


>gi|158286470|ref|XP_308773.4| AGAP006997-PA [Anopheles gambiae str. PEST]
 gi|157020483|gb|EAA45453.4| AGAP006997-PA [Anopheles gambiae str. PEST]
          Length = 1011

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 248/796 (31%), Positives = 392/796 (49%), Gaps = 99/796 (12%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTV 64
           IR  F+++F  K+ H L+ SSSLIP ND T+ F N+GM  FK++F G  E+P  +AV + 
Sbjct: 40  IRRQFIDYFTVKHNHRLIRSSSLIPFNDSTIAFVNAGMNQFKSVFLGTAERPCQRAVNS- 98

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR GGKHNDL  VG  + HHTFFEMLGN+SFG YFK  A ++AWDLL   + +D  R
Sbjct: 99  QKCVRVGGKHNDLSVVGTDSYHHTFFEMLGNWSFGDYFKREACEMAWDLLRNVYRIDTDR 158

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +Y+T +          DEE  ++W+ + G+  ++++     DNFW M  +GPCGPC+EI 
Sbjct: 159 VYVTYFGGDAKLNLPADEECRQIWRSL-GIPPERVLPFGARDNFWEMGNSGPCGPCTEIH 217

Query: 177 FD-QGE---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSID 225
            D  GE          +  G+P  +       EIWN+VF+Q+ +         LP+  +D
Sbjct: 218 LDLSGEYRNTKARQHLVNAGVPDLT-------EIWNIVFIQYNRSLDDGTIRNLPQRHVD 270

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNI---------VNHRVI 275
           TGMGLER+   LQ K +NYD DLF+ + +  ++ T  + Y G+ +           +R++
Sbjct: 271 TGMGLERLVAHLQHKQSNYDTDLFEPIFRRIQKATKKEPYRGSFLSTDSHYELDTAYRIM 330

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-------RLLGYTEPLMMHLLPA 328
            DH R  +  +ADG+ P+   + + LRRI+R+++  A       +LL  T P ++ +L  
Sbjct: 331 ADHSRMITACLADGMFPS---QNHKLRRIIRKSLALATRTFNHPQLLRETVPCVVEILST 387

Query: 329 LCTEMGSAYP---ELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLG------ 377
           +  EMG   P   ++I+ +  +   LR++       L +    L+    L H G      
Sbjct: 388 VYPEMGRNLPTVLQIIEHEQHLYSALRTKRSAETSALLQQFPQLEESEALEHPGLADAIK 447

Query: 378 -----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                K   LNG    KLYDT+GL     +++L   G    +++ F+    +     R  
Sbjct: 448 ELAQTKPTHLNGAHIHKLYDTYGLD----EELLVKLG----EMMHFSLDFRDYERYVRV- 498

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
              L  G   ++   L+ +  A + +   L   S  +K  R         +   G   + 
Sbjct: 499 ---LKDGHKHELATKLQTRLSAYENLRESL--DSATLKPTRAERRYNYAFNADKGTYEVA 553

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDV 546
               +   ++E+    Q   +V DQ+ FY E+GGQ  DTG           G   ++T V
Sbjct: 554 PCRARVSLLLEDEARDQ-WHIVTDQSNFYCESGGQQSDTGRLTVEAGGSAGGQTFEVTGV 612

Query: 547 QKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                  FV H+I  +    L    ++VL +D   R QL+++H+ATHLL+  +  ++   
Sbjct: 613 TD--HNGFVMHSIKRQPNVALSVGDTVVLQVDANRRTQLTLHHTATHLLNAVVRKVVALP 670

Query: 605 VSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           + Q  S ++    R ++  S + +T  ++ +IE  V  +I +N P+   + N  D   + 
Sbjct: 671 MCQRSSSVSERHFRLELAISGEKLTLEQIAAIETEVRTLINRNEPIGVTVCNAADLDLAT 730

Query: 664 AAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + G  Y DR +RVVS+     G  S  LC GTH + TGE+  + I + +  + G   
Sbjct: 731 VTIVPGETYPDRGLRVVSI-----GDVSRELCCGTHATRTGELQDVAITNVTQSKNGCFT 785

Query: 723 IEAITGQRARS-HLMG 737
             A+ G  AR  H +G
Sbjct: 786 FHAVAGPAARKVHYLG 801


>gi|270010617|gb|EFA07065.1| hypothetical protein TcasGA2_TC010044 [Tribolium castaneum]
          Length = 977

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 250/810 (30%), Positives = 391/810 (48%), Gaps = 126/810 (15%)

Query: 6   SIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           +IR  FL++F  KN H  + SS ++P  DPT+ F N+GM                     
Sbjct: 30  AIRQKFLDYFINKNNHNFIKSSPVVPFCDPTVAFVNAGMN-------------------- 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R GGKHNDL+ VG    HHTFFEMLGN+SFG YFK+ A +LAW LLT+E+ +   R
Sbjct: 70  QKCIRVGGKHNDLNVVGGDGYHHTFFEMLGNWSFGDYFKQEACELAWKLLTEEYKIHPSR 129

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T +        DED E  ++WK I G+S D+I+  T+ DNFW M  TGPCGPC+EI 
Sbjct: 130 LYVTYFKGDPVLGIDEDLETKEIWKTI-GVSEDRILPFTSKDNFWEMGPTGPCGPCTEIH 188

Query: 177 FD------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            D      + + +  GL           E+WNLVF+Q+ +++ +   +LP+  +DTGMG 
Sbjct: 189 IDHTTSNNRAKLVNKGL-------HDLTELWNLVFIQYNRKSNESVDLLPEKHVDTGMGF 241

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEG-------NNI-VNHRVIVDHLR 280
           ER+  VLQ K +NYD D F +L++A  +      +Y G       N++  ++RV+ DH R
Sbjct: 242 ERLTAVLQGKISNYDTDNFTYLLKAIHKNCSKIPEYRGTFGEKDWNSLDASYRVLADHAR 301

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRA--MCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
             +  +AD ++P    +   LRR+MRRA  +C   +      L+  L   +   +G  YP
Sbjct: 302 MVTVCLADAMIPEQNQK---LRRVMRRAFLLC-ENVFNKDSGLLKELSNYVIEHLGCVYP 357

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
           E+ +    I + +  E+E +     +       +  H  K                    
Sbjct: 358 EMERNVKQIHQIIDYEEEVYKSVRKQATEEWVKLAKHQPKLLSLDINENPSLVAGYKEIS 417

Query: 379 ---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN-----QALEEQRSRAR 430
               + ++  +AFKLYDT GL  D +        LA I  + FN     + LE  + R++
Sbjct: 418 STNPKFIDAQLAFKLYDTFGLDEDSIS------SLAQILNLPFNASDLHKQLELAKIRSK 471

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
              L  G    E++  +   K   +    Y   +G K++ +D +V               
Sbjct: 472 EQGLVSGPNVYEQLTRAKVPKTDRSTLYNY-AKKGEKYVFDDLEV--------------- 515

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKK 549
           ++  IV+  ++V +  S     +V D++ FY EAGGQ+ D G    GD +  ++T+ Q  
Sbjct: 516 VILKIVKDSKLVRQIESENFYGLVLDKSSFYTEAGGQISDRGAINFGDCV-FEVTEAQ-D 573

Query: 550 AEGIFVHHAIV---ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G  +H   +   E G ++  M+  L ID   R +   NH+A HLL+  L  + G+   
Sbjct: 574 CNGYILHKGFLRSGESGRVKVGMTGSLKIDPDFRLKNMRNHTAVHLLNSVLKKVKGA-TC 632

Query: 607 QNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGA 664
           Q  S +T +    DV   ++ ++  EL+ +E  +  +I   LPV ++ + ++  A     
Sbjct: 633 QKSSKVTQNYFNLDVGIFAEKLSLDELELVESTITKVIQGRLPVNISELDSQRLANLDEI 692

Query: 665 AALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             + G  Y +  +RVV V+  +G + S   C GTHV +T +I    IVS  S+      I
Sbjct: 693 ILIPGEVYPETGIRVVEVKGGEGFL-SREPCCGTHVLNTSDIEDFCIVSMKSLGRSTTSI 751

Query: 724 EAITGQRAR------SHLMGQDEKLKSLAS 747
             +TG RA+      +HL+   E L+   S
Sbjct: 752 HGVTGDRAKVAKSNGTHLLTNLETLEKSVS 781


>gi|170047897|ref|XP_001851441.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167870139|gb|EDS33522.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 1007

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 244/792 (30%), Positives = 385/792 (48%), Gaps = 104/792 (13%)

Query: 5   SSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVT 62
           + IR  FL+FF ++ GH ++ SS ++P +DPT+ F N+GM  FK++F G+ E P  +AV 
Sbjct: 38  AEIRRRFLDFFVRDHGHRVVRSSPVVPFSDPTIAFVNAGMNQFKSVFLGEREAPCRRAVN 97

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKCVR GGKHND+  VG    HHTFFEMLGN+SFG YFK  A ++A  LL   + +D 
Sbjct: 98  S-QKCVRVGGKHNDIGVVGTDGYHHTFFEMLGNWSFGDYFKREACEMALSLLKDVYRIDA 156

Query: 123 RRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           RR+Y+T +          D E  ++W  + G+  ++I+     DNFW M  +GPCGPC+E
Sbjct: 157 RRMYVTYFGGDAAMGLPADLECREIWASL-GIPEERILPFGARDNFWEMGSSGPCGPCTE 215

Query: 175 IFFDQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFI-LPKMSID 225
           I  D  +       G+  E  RY+        E+WN+VF+Q+ +     R   LP+  +D
Sbjct: 216 IHIDHSDQF-----GNVAERSRYVNAGLPDLTEVWNVVFIQYNRGLGDGRITDLPQRHVD 270

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNH---------RVI 275
           TG+GLER+   LQ+K +NYD DLF  L +  EQ++   KY+G     H         R++
Sbjct: 271 TGLGLERLVAHLQQKNSNYDTDLFVPLFERMEQISRKDKYQGVFDARHRNYELDTAYRIV 330

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
            DH R  +  ++DG+ P+   + + LRRI+RR +  +     +  L+  L+P +   +G 
Sbjct: 331 ADHTRMITACLSDGMFPS---QSHKLRRILRRTLSLSERTFGSPHLLRELVPVVVEILGE 387

Query: 336 AYPELIQAKLLIEETLRSEDERFGKT-----------------LDRGLVLLDGVLSHLGK 378
            YPE+ +        +R E+E + +                  +D   ++    L H  K
Sbjct: 388 TYPEMDKKLTESLAIIRHEEECYRQLRSALTSESRDLLKRNPWIDESELIDHPGLPHALK 447

Query: 379 D-------EILNGDVAFKLYDTHGLPLDIMQDIL----CARGLAGIDIISFNQALEEQRS 427
           +         L+G    K+YDT+GL  D+++ I         LAG +  +F++ L++   
Sbjct: 448 EIRKLNGANKLDGTFIHKMYDTYGLDEDLLEKIANFERLELDLAGYE--TFSKQLKQGAK 505

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFI-GYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
              A+ L    G + ++  S +   G T+ +  Y+ +        D   L  K       
Sbjct: 506 LELANQLQQSLGRSRELLSSTQA--GPTRNVYKYNYVYNGDKQTYDVPQLKTK------- 556

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQI 543
            ++SIVK+          A SG    V+ + + FY EAGGQ  DTG    A    ++ ++
Sbjct: 557 -ITSIVKS----------ATSG--CHVITEASNFYFEAGGQQSDTGRIWLAADPAVQFEV 603

Query: 544 TDVQKKAEGIFVHHAI--VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             V  + +G  +H        G++     +VL +D   R    I+H+ATHLL+ A   +L
Sbjct: 604 KSV-GECQGYVIHSVEDGAATGLISVGDEVVLAVDAARRTSNIIHHTATHLLNAATRKVL 662

Query: 602 GSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           G  + Q  S +   GLR ++      +   E+ +IE  V   I QN PV  R+ N  D  
Sbjct: 663 GVPMCQRSSVVGDKGLRLELAVCGAKVGPDEVDAIETIVRQSIRQNEPVRIRVCNASDVD 722

Query: 661 ASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            +    + G  Y +R +R+V +    G   S+  C GTH   T E+    I + +  + G
Sbjct: 723 LNKVTTIPGEIYPERGLRLVDI----GASTSTEFCCGTHAQQTAELQDFCITNLAQSKPG 778

Query: 720 IRRIEAITGQRA 731
                AI G+ A
Sbjct: 779 CFTFHAIAGEPA 790


>gi|309365022|emb|CAP23713.2| CBR-AARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 807

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 244/762 (32%), Positives = 389/762 (51%), Gaps = 75/762 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           +R +F +FFQ   HE++ S+S+IP  ND +L+FTN+GM  FK++     +P  + V  +Q
Sbjct: 27  LRKSFFDFFQSKKHEIVKSASVIPLENDGSLLFTNAGMNQFKSLILSSTEP--RRVANIQ 84

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQRR 124
           KC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AWD L +   +D  R
Sbjct: 85  KCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACKFAWDYLVEVLGIDSER 144

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY++ +         ED E  ++WK I G+ + +I+     +NFW M   GPCGPC+EI 
Sbjct: 145 LYVSYFGGIEKLGLPEDRECKEIWKNI-GVPSHRILPFVA-ENFWEMGAAGPCGPCTEIH 202

Query: 177 FDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +D+     GG   SS     +  +EIWN+VFM   + +  + + L +  IDTGMG ER+ 
Sbjct: 203 YDR----IGGRDASSLVNIDDSVVEIWNIVFMSNVRDSSGKIYNLGRNHIDTGMGFERLL 258

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNNIVNH----RVIVDHLRSSSFLIAD 288
           +V+Q K +N+D D+F  ++     +T   +KY G+         R++ DH+R+S+  I+D
Sbjct: 259 SVVQNKNSNFDTDVFIPILAKISSLTKKNLKYNGSVSSQEDAVFRLVADHVRASTIAISD 318

Query: 289 GILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM---GSAYPELIQAK 344
           G +P   G G+++R++MRR+       LG     +  L+P + + +    + Y E+ ++ 
Sbjct: 319 GAIPDGTGNGFIVRKMMRRSFLQGNSKLGIDRFGLSDLVPTVISTLVGVKNVYSEVEKSS 378

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I    + E+ +F KT+D+   + D V ++  K   ++G  AF L++T+GLPL +   I
Sbjct: 379 DKIINIFKEEETQFWKTVDKAKKMFD-VGANENKSSTISGRKAFNLFETYGLPLSVT--I 435

Query: 405 LCARGLAG-IDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
             AR L   +D   F +  LE Q+   +A    L     +    S KEKY       Y  
Sbjct: 436 EMARNLGKEVDEKEFERCQLEAQKLSQKASQFKLPVFAKDFPTHSDKEKY------SYSF 489

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
             G       R    + P         + +  + Q  E V      +K  VV ++  FYA
Sbjct: 490 ENG-------RYAFSKVP---------TTILQVYQNQEKVVVLKENEKGFVVLERCQFYA 533

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQNR 580
           E GGQ  D G  + DG  +   +  KK +   V   +  R +  ++ ++ +   +D + R
Sbjct: 534 EQGGQKSDIGKLLADGRNVFEVESAKKLDNGSV-TVLFGRALEPIQKDLRVEQQLDEKRR 592

Query: 581 RQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTH-----SKPITSAELKS 634
             +   HSATHLL+ AL  + LG+   Q GS +  + LRFD +       K   +  LK 
Sbjct: 593 EGVMKAHSATHLLNWALQRSGLGN--GQKGSSVDCNRLRFDYSTGDDSLDKSQRTEALKH 650

Query: 635 IEDNVNDIIAQN--LPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSS 691
           +E  +N+ I +     V+   +     I +  + +   +  D  VRVV++     GV+ S
Sbjct: 651 LEHILNEFIMKGGLTSVIETTLEEAKKIKNLQSDVKEDRIGDSSVRVVTL---GSGVNVS 707

Query: 692 A-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              C GTHV     I  + I+S+ S+   +RRI A+TG+ A+
Sbjct: 708 VECCSGTHVHDVSIIEDVAIMSDKSMGQNLRRIVAVTGEEAK 749


>gi|530410|emb|CAA83717.1| Ala-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 411

 Score =  330 bits (845), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 166/414 (40%), Positives = 249/414 (60%), Gaps = 28/414 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P    +T 
Sbjct: 6   TNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
            QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT +  FD+D
Sbjct: 66  SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDID 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+GE
Sbjct: 122 KNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIFYDRGE 180

Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L     E +RYIE+WN+VF QF          LP+ +IDTG GLER A++
Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFASI 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283
            Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH+R++ 
Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP L+  
Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLVDK 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           K L+E+T++ E+E+F KTL +G  LL+ ++    K+ + + D A  L++++G P
Sbjct: 361 KSLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFP 411


>gi|157119081|ref|XP_001659327.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108875478|gb|EAT39703.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 1012

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 251/810 (30%), Positives = 393/810 (48%), Gaps = 123/810 (15%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTV 64
           IR  F+++F Q+N H L+ SSS++P +DPT+ F N+GM  FKN+F G  E P  +AV + 
Sbjct: 38  IRQQFVDYFVQENEHRLVRSSSVVPFSDPTIAFVNAGMNQFKNVFLGTAEAPCPRAVNS- 96

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R GGKHND+  VG    HHTFFEMLG++SFG YFK  A Q+AW LLT+ + +D RR
Sbjct: 97  QKCIRVGGKHNDVSVVGSDGYHHTFFEMLGSWSFGDYFKREACQMAWRLLTEVYGIDPRR 156

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY++ +  DE        E   +W  + G+  ++II     DNFW M  +GPCGPC+EI 
Sbjct: 157 LYVSYFGGDEAMGLPADLECRDVWAGL-GIPPERIIPFGARDNFWEMGNSGPCGPCTEIH 215

Query: 177 FDQGE----------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-ILPKMSID 225
            D  +           +  G+P  +E       +WN+VF+Q+ +  +  R   LP+  +D
Sbjct: 216 IDHSDRFLDTEGRKHLVNAGVPDLTE-------VWNIVFIQYNRNLEDGRINDLPQRHVD 268

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN-----------HR 273
           TG+GLER+   LQ K +NYD DLF  +    ++VT    Y+G  I +           +R
Sbjct: 269 TGLGLERLVAHLQNKNSNYDTDLFVPIFDRIQKVTKKDGYQG--IFDSTDPRCPLDTAYR 326

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           ++ DH R  +  ++DG+ P+   + + LRRI+RR++  +  +  +  L+  L+P +   +
Sbjct: 327 IVADHTRMITACLSDGMFPS---QNHKLRRILRRSLSLSERVFSSPSLLQELIPVVVGIL 383

Query: 334 GSAYPEL------IQAKLLIEET----LRSEDERFGKTLDRGLVLLDG--VLSHLGKD-- 379
           G  YPE+       Q  +L EE     LRS      + L +     D   V  H G    
Sbjct: 384 GDTYPEMHKKLQQTQQIILHEEQSYQQLRSNLSSDSRALLKEYSYFDEAEVTDHPGLPYA 443

Query: 380 -------------EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ------ 420
                         +L+G++  K+YDT+GL  D++  I     L  +DI  +N       
Sbjct: 444 LKEIKRLKAKQGLRLLDGEMIHKMYDTYGLDEDLLVKIGEFEHLE-LDIKGYNSYSKLIK 502

Query: 421 -----ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
                 L  +   +   S GL  G  +K     + +Y        D            K 
Sbjct: 503 EGAKLELAARLQESLNTSQGLSQGLNQKQQCPTRNEYKYNYTYNKD------------KR 550

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-- 533
           L + P   L   ++SIV A    GE  E A+      V+ +++ FY E+GGQ  D G   
Sbjct: 551 LYEIP--KLKTKITSIVTA---DGE--ENAL----CHVITEKSNFYFESGGQQSDRGSLA 599

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--SLVLTIDYQNRRQLSINHSAT 590
            A       ++  V +  +G FV H++  R   +  +   ++LT+D   R    ++H+AT
Sbjct: 600 LATDPTTPFRVKSVGEH-QG-FVIHSVDRRAAEKLSVGDEVILTVDPIIRSSNIVHHTAT 657

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPV 649
           HLL+ A  ++L   + Q  S +   GL+ ++      I   E+ ++E  +   I QN PV
Sbjct: 658 HLLNAAARSVLAVPMCQRSSYVGDKGLKLELAVCGAKIGPDEVDAMEQQIRQCIRQNEPV 717

Query: 650 VTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
             R+ N  +        + G  Y ++ +R+V +    G   S+  C GTH  STG++   
Sbjct: 718 RVRVCNASEVDLDKVTMIPGEVYPEKGLRLVEI----GQSTSTEFCCGTHAQSTGQLQDF 773

Query: 709 YIVSESSIRAGIRRIEAITGQRA-RSHLMG 737
            I + S  ++G     AI GQ A ++H +G
Sbjct: 774 CITNVSQSKSGCYTFFAIAGQAAIKAHQLG 803


>gi|116180548|ref|XP_001220123.1| hypothetical protein CHGG_00902 [Chaetomium globosum CBS 148.51]
 gi|88185199|gb|EAQ92667.1| hypothetical protein CHGG_00902 [Chaetomium globosum CBS 148.51]
          Length = 835

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 249/716 (34%), Positives = 349/716 (48%), Gaps = 119/716 (16%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD--------EDEEAFKLWKKI 143
           MLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY+T ++         D EA +LW  +
Sbjct: 1   MLGNWSFGDYFKKEAIQWSWELLTKVYGLDPNRLYVTYFEGNPDMNLEPDLEAKQLWLDV 60

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEI 200
            G+  D I+     DNFW M + GPCGPCSE+ +D+     GG   +   +++    +E+
Sbjct: 61  -GVPEDHILPGDMKDNFWEMGDQGPCGPCSEVHYDK----VGGRNAAHLVNQDDPLVVEV 115

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WN VFMQF++Q  +    LP   IDTGMG ER+ + LQ KT+NY  D+F  L    ++VT
Sbjct: 116 WNNVFMQFDRQKDKSLMPLPAKHIDTGMGFERLVSALQNKTSNYATDIFTPLFARIQEVT 175

Query: 261 GM-----KYEGNNI----VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           G      KY  +++      +RV  DH+R  SF IADG  P N GRGYV+RR++RR + Y
Sbjct: 176 GARSYTDKYGKDDVDGIDTAYRVAADHIRLLSFAIADGAAPNNIGRGYVVRRVLRRGVRY 235

Query: 312 ARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
           AR     E       +LPAL  +MG  +PEL + +  I+E L  E+  F  TLDRG    
Sbjct: 236 ARKYFQAEIGSFFSSILPALVDQMGEQFPELKKKQEDIKEILDEEEVAFAVTLDRGEKQF 295

Query: 370 D--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           +    L+    +  L+G   ++LYDT G P D+ + +   RGL  ID      A E+ R 
Sbjct: 296 EKYAALAVKSGENKLSGADVWRLYDTFGFPEDLTKLMAEERGLT-IDEAEVEVAREKARE 354

Query: 428 RARA-------------HSLGLGSGTTEKIWFSLKEKY------GATQFIGYDLLRGSKF 468
            ++A             H +     T        + KY      G  Q +      GS+F
Sbjct: 355 ASKAVKEAVQTFPKLNVHQIAELENTVNLPRPDSEAKYKKGDIKGKVQLV----FTGSEF 410

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            K  ++ L  K P+ L                             + D+T FYAE+GGQ+
Sbjct: 411 RKTSKE-LPPKTPLGL-----------------------------LLDKTNFYAESGGQV 440

Query: 529 GDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            DTG  + DG+   ++ DVQ+   G  VH+  +E G L     ++   D   R+ +  NH
Sbjct: 441 ADTGRILIDGVAEFKVLDVQEFG-GYIVHNGYLEYGELTAGDEVICEYDELRRQPIRNNH 499

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           + TH+L+HAL  +LG  V+Q GS +  D LRFD +H   ++  E+K IE   N+ I ++ 
Sbjct: 500 TGTHVLNHALREVLGEEVNQKGSLVDQDKLRFDFSHKSQVSLEEIKKIEAMSNEDIQRDF 559

Query: 648 PVVTRIMNREDAIA-SGAAALLGTKY---------------------NDRVRVVSVEYED 685
               + ++   A    G  A+ G  Y                     N   R VSVE+  
Sbjct: 560 KTYAKDVDLSLAREIEGVRAVFGETYPDPVRVVSVGVDVDELLKNPKNPEWRKVSVEF-- 617

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   CGGTHV STG I  L IV ES I  GIRRI A TG  A  H   +D K
Sbjct: 618 --------CGGTHVDSTGAIKDLIIVEESGIAKGIRRIVAYTGDGA--HQAQRDAK 663


>gi|163784397|ref|ZP_02179287.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880336|gb|EDP73950.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 273

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 145/264 (54%), Positives = 191/264 (72%), Gaps = 1/264 (0%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLE+F+  GHE++ SSS+IP  DPTL+F N+GMVPFKN+F G EK  Y+   + 
Sbjct: 7   NEIRKNFLEYFKNKGHEIVKSSSIIPETDPTLLFVNAGMVPFKNVFLGLEKRPYKRAASC 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK  R  GKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTK  ++ + +
Sbjct: 67  QKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKKEAIEYAWEYLTKILEIPEEK 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+++V+ ED+EA+ +WK + GL  +KI ++   DNFWSM ETGPCGPCSEI+FD+GE   
Sbjct: 127 LHVSVFIEDDEAYDIWKNVIGLPEEKIHKLGVEDNFWSMGETGPCGPCSEIYFDRGEEY- 185

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G     S+E ERY+EIWNLVFMQ+ +    +   LP  +IDTGMGLER+A+VLQ   +NY
Sbjct: 186 GNPEFGSDEDERYLEIWNLVFMQYNRDETGKLTPLPHPNIDTGMGLERIASVLQGAKSNY 245

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN 268
           + DLF  +I+ +E ++G KY   N
Sbjct: 246 ETDLFMPIIKWTENISGKKYNPEN 269


>gi|325996515|gb|ADZ51920.1| Alanyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 334

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 166/334 (49%), Positives = 223/334 (66%), Gaps = 11/334 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65
           IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG   +P     T+ Q
Sbjct: 3   IRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + L
Sbjct: 62  LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           YI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE    
Sbjct: 122 YISVHEKDDEAAKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176

Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GS +    EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K 
Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKL 236

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NN+D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVL
Sbjct: 237 NNFDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
           RRI+RRA+ +  L+G  E  +  ++  +C +  +
Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFST 330


>gi|51102330|gb|AAT95878.1| alanyl-tRNA synthetase [Naegleria gruberi]
          Length = 614

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 205/621 (33%), Positives = 333/621 (53%), Gaps = 60/621 (9%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKIS 144
           LGN+SFG YFK  AI  AW+LLT+ + L++ RLY+T +          DEEA ++W +  
Sbjct: 1   LGNWSFGDYFKREAITWAWELLTEVYGLEKDRLYVTYFGGNEKLNLPADEEAKQIWGQF- 59

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIW 201
            +  D I+  +  DNFW M +TGPCGPCSEI +D+     GG   +   + +    +EIW
Sbjct: 60  -VPDDHILPGSMKDNFWEMGDTGPCGPCSEIHYDR----IGGRNAAHLVNMDDPNVLEIW 114

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N VFM+F ++  Q    LP   +DTGMGLER+ ++LQ K +NYD D+F  + +A ++ TG
Sbjct: 115 NNVFMEFNRKEDQTLEYLPAKHVDTGMGLERLVSILQNKMSNYDTDVFMPIFEAIQKETG 174

Query: 262 MK-YEGN---NIVNH-----RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
            + Y G      V+H     RVI DH+R+    ++DG  P N GRGYVLRRI+RRA+ + 
Sbjct: 175 SRPYTGKLGAEDVDHIDTAYRVIADHIRTLVIALSDGGYPDNTGRGYVLRRIVRRAVRFG 234

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             +   +  +  L   +   MG  +PEL +    +EE ++SE+  F KTL  GL   + +
Sbjct: 235 EFMNAKKGFLTRLASCVVELMGDFFPELKKNSEKVEELIQSEEVLFAKTLRVGLKFFNRI 294

Query: 373 LSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE-----Q 425
              +    + +++G  AFKLY T+G P+D+   +   +G+  +D++ + + +E+     Q
Sbjct: 295 AEKMKSNGESVVSGPDAFKLYATYGFPVDLTLIMAQEQGMT-VDMVEYKKEMEKHATASQ 353

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
            ++  A  + LG   T+K+   LK +   TQ          K++ E+     Q   + + 
Sbjct: 354 GTKQEATDMKLGVIETDKLQNELKIE--PTQ-------DDIKYVWEN----IQAKVVAIF 400

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           +  S  V+ +  + E V        + ++ DQT FYAE GGQ  D G        L++ +
Sbjct: 401 SESSGFVEELNTECEEV-------NIGIILDQTNFYAEGGGQAPDNGVLRIGETELKVVN 453

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTI----DYQNRRQLSINHSATHLLHHALSTIL 601
           VQK A G  +H   V    L   +++  T+    +Y+ R  ++ NH++TH+L+ AL  +L
Sbjct: 454 VQKFA-GYILHIVNVSESKLAGNVTVGTTVSSEVNYERREPIAANHTSTHMLNFALRKVL 512

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+   Q GS +  + L FD + +K  +  ++  +E  VND+I  + PV +++  R+ A  
Sbjct: 513 GTDCDQQGSIVKEEELCFDFSAAKAPSVEQVAEVEKIVNDLIVADHPVFSKVQERDAAYE 572

Query: 662 -SGAAALLGTKYNDRVRVVSV 681
            +G  A+    Y ++VRVVS+
Sbjct: 573 INGLRAMFSANYGEQVRVVSI 593


>gi|322795678|gb|EFZ18357.1| hypothetical protein SINV_04921 [Solenopsis invicta]
          Length = 1018

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 245/824 (29%), Positives = 385/824 (46%), Gaps = 125/824 (15%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR+ FL++F K+  H  + SS + P  D +L F N+GM  FK IF    KP        Q
Sbjct: 21  IRSEFLDYFMKDLNHSFIRSSPVSPITDQSLAFINAGMNQFKGIFLDYYKPPVTKAVNSQ 80

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R GGKHNDL  VG    HHTFFEMLGN+SFG YFKE A   AW+LLT  +D+ +  L
Sbjct: 81  KCIRVGGKHNDLSAVGNDGYHHTFFEMLGNWSFGDYFKEDACSYAWNLLTNVYDIPKEWL 140

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  DE        E   +W K+ GL  +KI+     DNFW M  +GPCGPC+EI+ 
Sbjct: 141 YVTYFGGDEKLGMSPDLECKDIWLKL-GLPENKILPFGMEDNFWEMGISGPCGPCTEIYI 199

Query: 178 D-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           D       Q E I  G P         +E+WN+VF+Q+E+        LP   +DTGMG 
Sbjct: 200 DFTKQSANQAEQINKGYPN-------IMELWNIVFIQYERLANGYIVPLPNHHVDTGMGF 252

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNN--------IVNHRVIVDHLRS 281
           ER+ ++LQ K +NYD DLF+ L  A ++ +   +Y+G             +R++ DH R 
Sbjct: 253 ERLVSLLQGKKSNYDTDLFQPLFNAIQKRSNAPEYKGTFGDDDTGKIDYGYRILADHTRM 312

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL- 340
            +  +AD +LP    +   LR+++R A+     +     ++  L+  +   +G AYPEL 
Sbjct: 313 ITVALADHMLPEQHPK---LRKVLRNAIDVGEKVFKKPSIVSELVCNVADNLGVAYPELH 369

Query: 341 -----IQAKLLIEETL------------------RSEDERFGKTLDRGLV----LLDGVL 373
                +Q  +  E+ L                  R E      ++  GLV     L  +L
Sbjct: 370 TNLKQVQRIIDFEDDLLKRLRNTSGKMWSKIVETRPELTAITDSMAPGLVDGYKDLQSML 429

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
             L K  +L+G VAFKLYDT+GL  + + ++     L   D I F + L  ++ ++R   
Sbjct: 430 KELRKTNVLSGTVAFKLYDTYGLNSETIAELAQIESLH-FDEIGFEEQLNNRKYQSR--- 485

Query: 434 LGLGSGTT---------------EKIWFSLKEKYGA-----------TQFIGYDLLRGSK 467
            GLG  +T                K   S K  Y             ++ IG  LL G  
Sbjct: 486 FGLGKHSTVITKESLGILKKNHVPKTDDSFKYNYTYDGNTYKFPALNSKLIGI-LLNG-- 542

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                 +++  K   ++T   ++  K  +  G+I  +     ++ ++ D+T  Y+  GGQ
Sbjct: 543 ------ELVANKNDSNITKINNADHKITINIGKIQSDT---DEIGIILDRTVCYSLEGGQ 593

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-----------VLTID 576
           + D G      +   + +V +K  G  +H         +T++S+           ++ I+
Sbjct: 594 VSDKGNICIKNLLFNVDNV-RKVSGYVIHSG----HFTKTDLSISDLHLQIGDDCLVNIE 648

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSI 635
              R     +H+ATHLL+ AL  I+   + Q G  +  D L+F   +  + +TS ++K+I
Sbjct: 649 PNIRIGAMKHHTATHLLNAALKQIMQV-IYQRGCTVDMDSLKFQFNSFGEQLTSQQMKAI 707

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +N+II  ++      +N  + +      L+  +      +  VE     + +   C 
Sbjct: 708 EVCINNIIQSHVATTVHTVNSLELLKQNDVTLVPGEIYPYTGIKIVEINTNDLKAKETCC 767

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQ 738
           GTHV +TG +     ++ +S  A  R I+A+ G  A RS   G+
Sbjct: 768 GTHVHNTGVLQHFCFLTYTSKGATKRTIKAVVGPEALRSKQAGE 811


>gi|307212580|gb|EFN88295.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 1019

 Score =  317 bits (812), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 243/810 (30%), Positives = 385/810 (47%), Gaps = 113/810 (13%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR  FL++F K+  H ++ SS + P  D +L FTN+GM  FK IF    +P    V   Q
Sbjct: 28  IRKEFLDYFAKDLKHSIIRSSPVSPITDQSLAFTNAGMNQFKGIFLNYYEPPATKVVNSQ 87

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R GGKHNDL  VG  N HHTFFEMLGN+SFG YFKE A   AW+ LT   D+ Q+ L
Sbjct: 88  KCIRVGGKHNDLSVVGNDNYHHTFFEMLGNWSFGDYFKEDACVYAWNFLTNICDIPQKYL 147

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +          D E   +W K+ GL   KI+     DNFW M  +GPCGPC+EI  
Sbjct: 148 YVTYFGGNKELGIAPDLECKNIWLKL-GLPEGKILPFDIQDNFWEMGPSGPCGPCTEIHV 206

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D  +         ++     +E+WN+VF+Q+E+        LPK  +DTGMGLER+ T+L
Sbjct: 207 DYMKRPTNQAARVNKGYADLMELWNIVFIQYERLENGCIVPLPKHHVDTGMGLERLVTLL 266

Query: 238 QEKTNNYDIDLFKHLIQASEQVT-GMKYEG--NNI------VNHRVIVDHLRSSSFLIAD 288
           Q KT+NYD D+F+ +  A ++ T   +Y+G  NN         +R++ DH R  +  +AD
Sbjct: 267 QGKTSNYDTDIFQPIFCAIQKYTKAPEYKGTFNNDDTGKIDYGYRILADHARMITVALAD 326

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP    +   LR+++R A+     +     ++  L+  +   +G  Y EL      ++
Sbjct: 327 NMLPEQHPK---LRKVLRNAIDTGEKIFRKTDILAQLVCDVADNLGEVYTELHNNLKQVK 383

Query: 349 ETLRSEDERFGKT----------------------------LDRGLVLLDGVLSHLGKDE 380
             ++ E++ F +                             L  G   L  +L  L K  
Sbjct: 384 RIIKFEEDLFNRLRNASNKRWNEMIKIRPELASITDWTAPGLVDGYKNLQTMLKELCKTN 443

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA-LEEQRSRARAHS-LGLGS 438
           +L G VAFKLYDT+GL L+ + +      LA I+ + F++A  ++Q   +R  S +G   
Sbjct: 444 LLPGSVAFKLYDTYGLNLETITE------LAQIESLHFDEAGFQKQLDISRYQSRIGFNK 497

Query: 439 GT---TEKIWFSLKE----------KYGAT-------------QFIGYDLLRGSKFMKED 472
                TEK    L++          KY  T             + IG  ++ G      +
Sbjct: 498 NNIVFTEKSLRILEKNHMPKTDDSFKYNYTYDGNDYKFPMLNSKLIGI-IINGQLVTDTN 556

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             +       D+ N +S  V  I+          S  ++ ++ D+T  Y+  GGQ+ D G
Sbjct: 557 SHIANLN---DVNNKISINVSDILN---------SKDEIGIILDKTICYSLEGGQVSDQG 604

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVER-GILRTEMSL------VLTIDYQNRRQLSI 585
                 +   I +V +K  G  +H    E+  I  +EM L      ++ ID Q R     
Sbjct: 605 NIHIKNLFFNIHNV-RKINGYVIHFGKFEKTDIPPSEMYLEIGDDCLVNIDSQIRVDTMK 663

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIA 644
           +H+A HLL+ A+  ++ + V Q    +  + L+F      + +T  +++ IE+ +N++I 
Sbjct: 664 HHTAAHLLNAAMKEVMHT-VYQRACTVDMNNLKFQFNPFGEKLTLEQMRMIENRINNVIQ 722

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            ++ V  + +N    +      L+  +   Y D +R+V +  ED  + +   C GTHV +
Sbjct: 723 SHVAVTVQTLNSLQLLGQDDITLVPGEIYPYTD-IRIVEINAED--LKAKEACCGTHVHN 779

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           TG +   Y V+ +S  A    ++A+ G  A
Sbjct: 780 TGVLQHFYFVTYTSKGAAKCDVKAVVGPWA 809


>gi|156543880|ref|XP_001606952.1| PREDICTED: similar to alanyl-tRNA synthetase [Nasonia vitripennis]
          Length = 954

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 218/665 (32%), Positives = 324/665 (48%), Gaps = 75/665 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IRT FLE+F KN H ++ SS ++P NDP++ F N+GM  FK +  G   P    V   QK
Sbjct: 11  IRTEFLEYFAKNNHAIVRSSPVVPLNDPSIPFVNAGMNQFKGVLLGDHSPPAFRVANSQK 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R GGKHNDLD VG  + HHTFFEMLGN+SFG YFKE A + AW+LLT+ + + +  LY
Sbjct: 71  CIRVGGKHNDLDIVGNDSYHHTFFEMLGNWSFGDYFKEEACKYAWELLTEIYGIKKDFLY 130

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T +  +E        E  ++W KI G+  D I+     DNFW M  TGPCGPC+EI  D
Sbjct: 131 VTYFKGNEKLNLQPDLECKEIWLKI-GVPKDHILPFGIEDNFWEMGPTGPCGPCTEIHID 189

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       ++  +   E+WN+VF+Q+++        L K  IDTGMG ER+ TVLQ
Sbjct: 190 HTMQSKNQASRVNKGHDDLTELWNVVFVQYQRLQNGRIIPLLKKHIDTGMGFERLVTVLQ 249

Query: 239 EKTNNYDIDLFKHLIQASEQVT-GMKYEG-------NNI-VNHRVIVDHLRSSSFLIADG 289
           EK +NYD D+F+ L +A E+ T   KY+G       N I   +R++ DH R  +  +ADG
Sbjct: 250 EKRSNYDTDIFQPLFEAIEKFTHAPKYQGRFGTADKNKIDTGYRILADHARMVTVALADG 309

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP    +   LRRI+R+A+  +     T  L+  L   +   +G  YPE+ +    I+ 
Sbjct: 310 MLPDKNQK---LRRILRKAIDISEESFKTSQLLSELTNHVAFSLGDVYPEIYKNLNKIQH 366

Query: 350 TLRSEDERFGKT----------------------------LDRGLVLLDGVLSHLGKDEI 381
            ++ E+E                                 L  G   L   L    K   
Sbjct: 367 IIQYEEEVMKSARNNAAKNWRKVVENRPELSAITDATLPGLTAGYYELQTFLKSEYKVNS 426

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L GD A+KLYDT+GL  + +  +     +   D+ +F +A+E+ R R+R  +  L     
Sbjct: 427 LPGDFAYKLYDTYGLNSETICKLAEIESIP-FDLKTFKEAIEKARERSRHKADKLNDEII 485

Query: 442 EKIWFSLKEKYGATQ---FIGYDLL---RGSKFMKEDRKV--------LCQKPPIDLTNG 487
            +   +L E     +    + YD     +G +F     K+        L  +P       
Sbjct: 486 SEYSLNLLESGNVPKTDDLLKYDYTITEKGYQFPVVKCKIVGMIMNGNLISEPETAFNVD 545

Query: 488 VS-SIVKAIV-QQGEIVEEA---VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
            S +IV+A V   G IVE +    +  +V ++ D+TP Y+ AG Q+ D G      +   
Sbjct: 546 ESQTIVEATVTNSGNIVESSAVVTTNAEVGIILDKTPAYSTAGSQISDKGHIQIKDLLFN 605

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSL------VLTIDYQNRRQLSINHSATHLLHHA 596
              V+K  + +      V+      E  L      +++ID + R     +H+ATHLL+ +
Sbjct: 606 FEKVRKIRDYVIHIGHFVDWDEANPEHELQVGDECLISIDEKIRLGAMRHHTATHLLNAS 665

Query: 597 LSTIL 601
           L  IL
Sbjct: 666 LQQIL 670


>gi|195014128|ref|XP_001983963.1| GH16181 [Drosophila grimshawi]
 gi|193897445|gb|EDV96311.1| GH16181 [Drosophila grimshawi]
          Length = 1012

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 235/819 (28%), Positives = 381/819 (46%), Gaps = 120/819 (14%)

Query: 7   IRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TF+++F  N  H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFIDYFTANHEHKFIRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPSRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F +W+ + G  A +I+   + DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKLLGIPADMECFDIWRSL-GFPAARILPFGSKDNFWEMGTTGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D     PG  PGS E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHR---PGSDPGSVEQRAKLVNAGRADLTELWNLVFIQYNRNTDGSITSLPAKHVDTGMG 252

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVDHL 279
            ER+  +LQ K++NYD DLF  L      ++     G +            ++R++ DH 
Sbjct: 253 FERLTALLQNKSSNYDTDLFTPLFDGIHSLSKAPVYGGSFPVAENSALLDTSYRILADHA 312

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE
Sbjct: 313 RMVTACLADGMLPDQNQK---LRRVLRKALSISEQVFSHENLLSQLVPIVVETLGEAYPE 369

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEI----------------- 381
           +   +  + E +  E E +    +    +   VL+     D+I                 
Sbjct: 370 MSSKQQAVLELIAHEQEVYKNLRESSSKIFAEVLTEFPNLDDIDLMECPGFVPAYREFQV 429

Query: 382 ---------LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR-----S 427
                    + GD  +KL DT+GL  D    +         ++ + N  LE  R     +
Sbjct: 430 QRSKFANNTIPGDFLYKLTDTYGLTEDSFVKL--------AELENMNCDLERYRAELALA 481

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK-----FMKEDRKVLCQKPPI 482
           + R       SG  +    +L+++    Q      L  +      F   D +      P 
Sbjct: 482 KLRTKEPQRNSGIYD---LALQQRIAEAQAQLTMRLAATDNSHKYFYSYDAQSETYAIPT 538

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAV------SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                ++S V  I+Q    V   +      S   + +V   + FY E+GGQ  D G    
Sbjct: 539 -----LNSRVLGIIQNDAEVSRTLGSRLGESTDTLSIVTAASNFYYESGGQQSDLG---- 589

Query: 537 DGIRLQITDVQKKAE-------GI-FVHHAIVERGILRT-----EMSL----VLTIDYQN 579
              +L + + QK  +       G+  ++  +V    L T     E++L    +L +D Q 
Sbjct: 590 ---KLLVRNKQKPEQPHQLDVVGVKCLNDCVVHVCRLATPTDDFELALGDEVLLEVDAQQ 646

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDN 638
           R+  + +H+A HLL+ A+ ++      Q  S ++ D  + ++    K I  A+++ IED 
Sbjct: 647 RQLNTCHHTAIHLLNAAIRSLFNKVTYQVSSAVSSDQCKLELGLLGKRIQKADVEHIEDL 706

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGG 696
           +N  I     V  + ++  D +      ++ G  Y ++ +R+++V+  +  + S  LC G
Sbjct: 707 INRAICSGSAVQVQQLSAADVLQQNDITMVPGEVYPEQGLRLINVQCPELNLSSKELCCG 766

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           THV++T E+    IV+            A+ GQ A + L
Sbjct: 767 THVTNTKELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 805


>gi|227538396|ref|ZP_03968445.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241743|gb|EEI91758.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 599

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 208/637 (32%), Positives = 344/637 (54%), Gaps = 61/637 (9%)

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH+R+ SF IADG LP+N   GYV+RRI+RRA+ YA   L +  P +  L+P L  
Sbjct: 12  RVLSDHIRAVSFAIADGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFINELVPLLAK 71

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391
           E    + ELIQ +  +++ +  E+  F +TL  G+   +   ++   +  + G+ AF+L+
Sbjct: 72  EFEGVFDELIQQQDFVQKVVLEEEVSFLRTLVTGVQRFE---TYAESNTAVGGEFAFELF 128

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+D+ + +   +G+  +D+  F +AL+ Q+ R+RA +  + +G     W ++ E 
Sbjct: 129 DTYGFPIDLTELLAREKGME-VDMAGFQEALQVQKDRSRA-ATAIDTGD----WVAVSED 182

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
               +F+GYD L+ +  + + RKV  +                              ++ 
Sbjct: 183 -DQIEFVGYDNLKATTEIVKYRKVTAK----------------------------GKEQY 213

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           ++V   TPFYAE GGQ+GD+G  + +  G ++ ITD  KK  G+ VH        ++ E 
Sbjct: 214 QLVLSVTPFYAEGGGQVGDSGVLLSESTGEKIYITDT-KKENGLIVH--FTNTLPVQMEG 270

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +    +D Q R     NHSATHLLH AL  +LG+HV+Q GS +  D LRFD++H   +T 
Sbjct: 271 TFEAKVDVQKRLDTENNHSATHLLHAALKEVLGTHVNQKGSLVNADILRFDISHFAKVTE 330

Query: 630 AELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            ELK +ED VN  I +N+P+   R +  + A+ SG  AL G KY D VRV++ + +    
Sbjct: 331 EELKQVEDIVNAKIRENIPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVITFDDQ---- 386

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHV +TG+I    I+SES++ AG+RRIEAITG +  + +    + +  L   
Sbjct: 387 FSKELCGGTHVKATGQIGFFKIISESAVAAGVRRIEAITGTKCAAVIREHFDLVHRLGEL 446

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           L  +  + V  + ++ +E   L+      +I     L+ ++E     +I  VNF++  + 
Sbjct: 447 LH-NPKDFVSTLSKVIDENSALKKEIEKSIIEKSLALKSDLEQ-KIQQINGVNFLATQVE 504

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860
             +++ LK++  AL+  + + + +++G   E K ++ +VV++ L      NA  + R  A
Sbjct: 505 LPNAEALKTLAYALKGAVDN-LFLVLGADFEGKPNLTVVVSDQLSKERGLNAGTIVRELA 563

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           K +  GGGGG+P  A +GG N      AIA   ++++
Sbjct: 564 KEI-NGGGGGQPFFATAGGKNPEGLPAAIAKAKNYIQ 599


>gi|229553796|ref|ZP_04442521.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|229312819|gb|EEN78792.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
          Length = 394

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/391 (43%), Positives = 242/391 (61%), Gaps = 26/391 (6%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++ VG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF
Sbjct: 117 WFDFDPKRLYVTVYPKDKGTKELWRKV-GVADDHIVE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228
           +D+G+         P   PG   E  RY+EIWN+VF +        RF+  P  +IDTGM
Sbjct: 173 YDRGQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285
           GLER+  V+Q     ++ DLF  +I+A+E+++  K  G    + V+ ++I DH R+ +F 
Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFA 289

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  + 
Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQP 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
            I++ + SE+ RF +TLD G+ LL+ +++ L
Sbjct: 350 FIQKVIESEEARFRQTLDAGVNLLNQIVAEL 380


>gi|297737925|emb|CBI27126.3| unnamed protein product [Vitis vinifera]
          Length = 1026

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/409 (42%), Positives = 235/409 (57%), Gaps = 35/409 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58
           + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P      + 
Sbjct: 14  NKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKLT 73

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
           +A  T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK  
Sbjct: 74  RACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKAK 132

Query: 118 ---FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
              + L   R+Y T +  DE        EA  +W K   L    ++     DNFW M +T
Sbjct: 133 NLVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDT 190

Query: 167 GPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           GPCGPC+EI FD+ G      L  + +     IEIWNLVF+QF +++      LP   +D
Sbjct: 191 GPCGPCTEIHFDRIGNRDAASLVNNDD--PTCIEIWNLVFIQFNRESDGSLKSLPAKHVD 248

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIV 276
           TGMG ER+ ++LQ K +NYD D+F  +  A +Q TG +     +         + +RV+ 
Sbjct: 249 TGMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVA 308

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ SF IADG  P NEGR YVLRRI+RRA+ Y + +L   E      +  +   MG 
Sbjct: 309 DHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGD 368

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNG 384
            +PEL Q ++ I E +  E+  FGKTL +G+         + + +ILNG
Sbjct: 369 VFPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEV-QGKILNG 416



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 180/358 (50%), Gaps = 39/358 (10%)

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF L+DT+G PLD+ Q +   RGL  +D+  FN AL+E R R+R+       GT      
Sbjct: 486 AFVLWDTYGFPLDLTQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGT------ 538

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT--NGVSSIVKAIVQQGEIVEE 504
                      I  D    S   K  R V         T      S++KAI    E +E 
Sbjct: 539 -----------IVMDADATSALHK--RGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLES 585

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVE- 561
           A +G +V +V + T FYAE GGQ+ DTG   G     Q+ +VQ    G F+ H  +  E 
Sbjct: 586 ASAGNEVGIVLETTSFYAEQGGQIFDTGSLEGTSGSFQVCNVQ--IYGGFILHIGSFTEA 643

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G       ++  +DY  R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD 
Sbjct: 644 SGRFSVGDKVICKVDYDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDF 703

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS 680
           +H KP+    L+ IE  VN+ I   L V ++  +  DA + +G  A+ G  Y D VRVVS
Sbjct: 704 SHGKPVHPDHLRKIESIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVS 763

Query: 681 VEYE------DGGVH-----SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           +  +      D G       S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T
Sbjct: 764 IGQKVEDLLADPGNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVT 821


>gi|328701423|ref|XP_003241593.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 974

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 240/775 (30%), Positives = 368/775 (47%), Gaps = 89/775 (11%)

Query: 5   SSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  F+++F K N H+ + SS ++P NDPT+ F N+GM  FK++  GQ       V  
Sbjct: 24  NEIRKRFIDYFVKENDHKYIKSSPVVPYNDPTIAFVNAGMCQFKSVLLGQRTLAANCVAN 83

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEFDLDQ 122
            QKC+R GGKHNDLD VG    HHTFFEMLGN+SFG Y K  A  LAW+LLT   F++  
Sbjct: 84  SQKCIRVGGKHNDLDIVGSDGYHHTFFEMLGNWSFGHYGKAEACHLAWNLLTLPPFNIPT 143

Query: 123 RRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            +LY TV++         D E  ++WK I G++ D I+    NDNFW M ETGPCGPC+E
Sbjct: 144 EQLYCTVFNGDRTLDVESDNETLQIWKNI-GVNDDHIVMNGVNDNFWEMGETGPCGPCTE 202

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I  D     P G       G+  IE+WN+VF+Q+ ++    R  LP   IDTGMGLER+ 
Sbjct: 203 IHIDYP---PSG-------GKNLIELWNIVFIQYSREKNTMR-KLPNYFIDTGMGLERLT 251

Query: 235 TVLQEKTNNYDIDLFKHLIQA------SEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIA 287
            VLQ+KT+ YD DLF  +           + TG+ Y+G ++   +RV+ DH R  +  ++
Sbjct: 252 MVLQDKTSTYDTDLFSSIFNIIFNACRISKYTGL-YDGTSLDTYYRVLADHGRMITVALS 310

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMGSAYPELIQAK 344
           D +LP+   + + LRR++R++   A      +P   L+  +   +   +G+ YPELI+  
Sbjct: 311 DNMLPS---QNHKLRRLIRKSFILAETNFKIQPGYTLICDIANEVSNSLGNVYPELIKNN 367

Query: 345 LLIEETLRSEDERFGK-----TLDRGLVLLDGVL-----------------SHLGKDEIL 382
             ++  ++ E   F K     + D  +++ +  +                 ++L K + +
Sbjct: 368 EKVKHLIKHEYAIFNKLRMSVSKDWKIMVEECPMLKSFDPYEECTGFVPACNYLIKHKNM 427

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH----SLGLGS 438
           +   AF LYD  GL    +  +    G   ++     + L++ +++   H    S    +
Sbjct: 428 SNIPAFTLYDAFGLEKKTIGRLAEVMG-KPVNWNELYEKLKKLQTKTIKHTERKSNIYMT 486

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
           G   K   S K          Y+++R +        ++ +   I   NG       I QQ
Sbjct: 487 GNIPKTDDSFK----------YEVIRHNNESYLSPVLIAKLLAIVDINGNIVTEPDIKQQ 536

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHH 557
           G++         V +V D+T FY +AGGQ  D G     +G    +  V K  E   V H
Sbjct: 537 GDL---------VSLVLDKTSFYCKAGGQQNDIGIVKTNNGKVFDVIGVDKIEENGVVLH 587

Query: 558 AIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
            I  R   IL +E  L + +D  NR  L   HS+ H+L+  L+  L    +Q  SC+  D
Sbjct: 588 HINSRDWPILLSENELHVQVDSNNRLGLMRAHSSVHILNSVLNLYLVV-TTQLSSCVKKD 646

Query: 616 GLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
            + F      +  +  +   IE+ V  +I   + V    +   D        L G  Y D
Sbjct: 647 FMSFTFALFGQTFSPKDALVIEEKVKSVIQSAVSVKRTTVTSNDLNQINVTLLPGEVYPD 706

Query: 675 RVRVVSVEYE-DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            V ++ +    D    S   C GTHV +T +++   IV +         I A+TG
Sbjct: 707 EVHLIDMYSNVDDSYISREACCGTHVQNTLDVIDFCIV-QYKCNINECTIMAVTG 760


>gi|295698289|ref|YP_003602944.1| alanyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157382|gb|ADD79827.1| alanyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 426

 Score =  313 bits (802), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 169/423 (39%), Positives = 250/423 (59%), Gaps = 18/423 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFK-NIFTGQEKPVYQA 60
           N   IR  FL FFQ+  H +LP S L+P   + +L+FTN+GM  F+ N F  ++   +  
Sbjct: 5   NTHEIRKIFLRFFQEKDHLILPGSKLVPSERNSSLLFTNAGMNQFRENFFKKEKLSSFTR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           V T Q C+RAGGK +DL+NVG TN HHT FEMLGNFSFG YF+  +I+ AW+LLT  K F
Sbjct: 65  VATSQYCIRAGGKFSDLENVGYTNSHHTLFEMLGNFSFGDYFRSESIEYAWELLTSKKWF 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-------NDNFWSMAETGPCGP 171
            + + ++ ITV+  DEE++ +W    G+S +KI +I         ++NFW M +TGPCGP
Sbjct: 125 GISKNKILITVHHLDEESYDIWANQIGISKNKIFKIEDKENHKYHSENFWKMGKTGPCGP 184

Query: 172 CSEIF--FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            +EIF  FD+ +   G L       + +IEIWN+VF+QF   +  +   L   SIDTGMG
Sbjct: 185 STEIFYNFDEKDDFDGSLESFERRKKNFIEIWNIVFIQFNLNSSNKLEPLRYKSIDTGMG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQA-SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           LER+A+V+Q   +NY ID FK LIQ+   Q + + ++   +   R++ DH+RS   +I +
Sbjct: 245 LERIASVIQNVKSNYQIDTFKKLIQSIRSQFSAICFKDYTL---RILSDHIRSIVLIINE 301

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            I P+N GRGYV+R+I+RRA+    L G  EP +  ++          +  +   + +IE
Sbjct: 302 NIKPSNVGRGYVIRKIIRRAVRKGYLDGIREPFLYKIVSCFTRSNEKDFKYVKINQKIIE 361

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            T++ E+++F K +  G+  L   L +     I   D+ F L+DT+GLP+DI   I    
Sbjct: 362 HTIKKEEKQFLKIILVGIKFLKEKLKNFNYRFISEKDI-FLLHDTYGLPIDIAMKICKEH 420

Query: 409 GLA 411
           G +
Sbjct: 421 GTS 423


>gi|195127375|ref|XP_002008144.1| GI13332 [Drosophila mojavensis]
 gi|193919753|gb|EDW18620.1| GI13332 [Drosophila mojavensis]
          Length = 1009

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 231/804 (28%), Positives = 374/804 (46%), Gaps = 93/804 (11%)

Query: 7   IRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TF+++F  N  H+ + SS ++P  DPT+ F N+GM  FK+IF G     Y+ V   Q
Sbjct: 17  IRKTFIDYFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSIFLGTAAAPYKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPSRL 136

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +          D E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKLLGIPADMECFEIWRSL-GFPAARILPFGCKDNFWEMGTTGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D     PG  P S E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHR---PGDGPASIEQRAKLVNAGRPDLTELWNLVFIQYNRNADGSITQLPAQHVDTGMG 252

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVDHL 279
            ER+A +LQ K++NYD DLF  L  A   ++       +            ++R++ DH 
Sbjct: 253 FERLAALLQNKSSNYDTDLFTPLFDAIHSLSKAPVYAGSFPDDQNAALLDTSYRILADHA 312

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE
Sbjct: 313 RMVTACLADGMLPDQNQK---LRRVLRKALSISEQVFAHDKLLSQLVPIVVETLGEAYPE 369

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEI----------------- 381
           +   +  + E +  E E +    +        VL+   K D+I                 
Sbjct: 370 MSTKQQAVIELIAHEQEVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYREFQV 429

Query: 382 ---------LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                    + G+  +KL DT+GL  +          L   ++ + N  L+  R+     
Sbjct: 430 QRSNFPNNTIPGEFLYKLTDTYGLTEESF--------LKLAELENMNCDLDRYRAELALA 481

Query: 433 SLGLGSGTTEKIWF--SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS- 489
            L        +  F  +L+++    Q     L +         K +      + T  +  
Sbjct: 482 KLKTKEPQNNRGDFDLALQQRIADAQ---AQLTKRLASTDNSYKYIYSYDEENETYAIPM 538

Query: 490 --SIVKAIVQ-QGEI--VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
             S V  I+Q   E+  V    S   + +V   + FY E+GGQ  D G  +    +    
Sbjct: 539 LKSCVLGILQDDSEVSRVRPEASLNTLSIVTAASNFYFESGGQQSDLGMLLVHNKQKPEE 598

Query: 545 DVQKKAEGI-FVHHAIVERGILRTEM---------SLVLTIDYQNRRQLSINHSATHLLH 594
             Q +  G+  ++  +V    L T            + L +D ++R+  + +H+ATHLL+
Sbjct: 599 PHQLEVVGVKHLNECVVHVCRLTTPSDDFDLAVGDEVQLEVDAKHRQLNTCHHTATHLLN 658

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            A+ ++      Q  S ++ +  + ++    K IT A+++ IED +N  I    PV    
Sbjct: 659 AAIRSLFNKVTYQVSSAVSSEQCKLELGLLGKRITKADVQHIEDLINRAICSATPVQVHQ 718

Query: 654 MNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++  D +      ++ G  Y ++ +R+++V+  +  + S  LC GTHV++T E+    IV
Sbjct: 719 LSAADVLQQNDITMVPGEVYPEQGLRLINVQCPELNLSSKELCCGTHVTNTKEMSCFCIV 778

Query: 712 SESSIRAGIRRIEAITGQRARSHL 735
           +            A+ GQ A + L
Sbjct: 779 NLKQTNRARYAFTAVAGQAAENVL 802


>gi|302415839|ref|XP_003005751.1| alanyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261355167|gb|EEY17595.1| alanyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 868

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 205/604 (33%), Positives = 313/604 (51%), Gaps = 88/604 (14%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVY-- 58
            + +R TF++FF++ GH ++PSSS++P NDPTL+FTN+GM  FK+IF G   Q  P Y  
Sbjct: 9   AAKVRETFIKFFEERGHTVVPSSSVVPHNDPTLLFTNAGMNQFKSIFLGTIAQSDPTYGL 68

Query: 59  QAVTTVQK----CVRAGGKHNDLD---NVGRTNRHHTFFEMLGNFSFG--GYFKERAIQL 109
           +  T  QK    C  A  + ++L    +     + H+FFEMLGN+SFG   YFK+ AI+ 
Sbjct: 69  KRATDTQKGMSSCPTAANRASELTVWCSYSCRWQGHSFFEMLGNWSFGPQDYFKKDAIKY 128

Query: 110 AWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFW 161
           +W+ +T+   L++ RLY+T ++ D         E+ +LWK + G+    I+  +  DN+W
Sbjct: 129 SWEFMTETLGLEKDRLYVTYFEGDPAQGLEPDLESKELWKSV-GVPESHILPGSKADNWW 187

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFI 218
           SM +TGPCGPCSE+ +D+     GG   +   +++    +E+WN V+M ++++  Q    
Sbjct: 188 SMGDTGPCGPCSELHYDK----IGGRDAAHLVNKDDPMVVELWNNVWMAYDRRADQSLTP 243

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI---- 269
           LP   +DTGMG ER+   LQ+ ++NY  D++    +  ++VTG      KY   +     
Sbjct: 244 LPAQHVDTGMGFERLVAALQDVSSNYATDIWSPYFKKIQEVTGTRAYTDKYGAEDPETID 303

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLP 327
             +R   DH+R   F IADG +P NEGRGYV+RR++RR   YAR     E       +LP
Sbjct: 304 TAYRACADHIRMLGFAIADGAVPNNEGRGYVVRRVLRRGARYARKYLNAEIGTFFSRVLP 363

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGD 385
            L  EMG  +PEL++ +  I+E L  E+E F KTLDRG            K  +  L+G 
Sbjct: 364 TLIDEMGQQFPELVKKQNDIKEILDEEEEAFAKTLDRGEAQFQKFAGAAEKKGLKKLSGA 423

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
             +KLYDT+G P+D+ Q +   RGL  ID      A E+ R  +++    + +       
Sbjct: 424 EVWKLYDTYGFPVDLTQLMAEERGLQ-IDDEEVKAAQEKAREASKSVKSAIET------- 475

Query: 446 FSLKEKYGATQF-IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           F   + +G  +    + + R     K++K D K   Q     + +G     K  V+  + 
Sbjct: 476 FPKLDVHGIAELEQQHKVARTNDADKYVKGDSKGKVQL----IFDG-----KGFVKSTKD 526

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           + E      + V+ D+T FYAEAGGQ        G G             G  +HH  +E
Sbjct: 527 IAENTP---ISVILDKTNFYAEAGGQ--------GYG-------------GYILHHGYIE 562

Query: 562 RGIL 565
            G L
Sbjct: 563 SGTL 566



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 98/273 (35%), Gaps = 43/273 (15%)

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ED    G+  LL        R +SVE+          CGGTHV  TG I  L IV ES I
Sbjct: 604 EDVNQKGSLDLLENPKKPEWRNISVEF----------CGGTHVEQTGHIKDLVIVEESGI 653

Query: 717 RAGIRRIEAITG------QRARSHLMGQ----------DEKLKSLASFLKVSQGNVVGR- 759
             GIRRI A TG      QR  + L  Q           EK K +    +      +   
Sbjct: 654 AKGIRRIIAFTGDAAHQVQREATELSRQLDIVEALPYSPEKEKEVKEVQQALSKATISTL 713

Query: 760 ------------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
                       V+ I +E +K Q   AK  L   V+           ++  +    ++K
Sbjct: 714 TKDELKKKLDKMVKAITDEQKKRQKAEAKTALD-TVQKYFTENPDAKAYVGQLPISANTK 772

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGG 865
            L   +     K +   + L G  KE+ A V  + V T        A   A   + V+GG
Sbjct: 773 ALTETIKHYSTKDKERSVYLFGGGKEENAVVHGVYVGTHLASKGVTAEAWASTVSDVVGG 832

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             GG  P   Q  G      D  +     +L++
Sbjct: 833 KSGGKEP-TRQGQGTKPEATDDGVKAATKWLEE 864


>gi|196018718|ref|XP_002118857.1| hypothetical protein TRIADDRAFT_62857 [Trichoplax adhaerens]
 gi|190577957|gb|EDV18657.1| hypothetical protein TRIADDRAFT_62857 [Trichoplax adhaerens]
          Length = 510

 Score =  310 bits (795), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 212/608 (34%), Positives = 313/608 (51%), Gaps = 101/608 (16%)

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+LP+NEGRGYVLRRI+RRAM +   +GY   L+  L P    EM   Y EL +A  LI 
Sbjct: 1   GVLPSNEGRGYVLRRILRRAMRHIHNIGYKGNLLSKLAPVFINEMNDIYSELEEASDLII 60

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            TL  E+ERF +TL  G+  L   ++ L +   LNG   FKLYDT+G PLD+  DIL  +
Sbjct: 61  STLDIEEERFRETLRIGMKYLKEEINTLSEGASLNGSKVFKLYDTYGFPLDLTADILKDK 120

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A++EQ+ +ARA   G G      IWF + +K+G T+FI  D   GS  
Sbjct: 121 KIK-LDYDGFESAMQEQKRKARAAWSGSGEKDFSSIWFDIYDKFGGTEFIRKD--DGSYV 177

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            K                     V+AI++ G++V++A +G+ V +V DQT FYAE+GGQ+
Sbjct: 178 GK---------------------VQAIIKDGKLVQKASTGEDVIIVTDQTTFYAESGGQI 216

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINH 587
           GD G  I D    ++ D +K A+ I  H+  ++  I +  E+  +  +DY  R  +  NH
Sbjct: 217 GDRGY-INDN---EVYDTKKFADKIHGHYVCLKNDISIGDEVKFL--VDYNLRNLIKANH 270

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH+LH AL  ILG HV+Q GS ++ D LRFD  H+K +T  E+ ++E  VN II  N 
Sbjct: 271 SATHILHFALREILGKHVTQKGSLVSYDKLRFDFAHNKAMTKDEIINVEKRVNSIIMLNS 330

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T +M+ + A  SGA AL G KY++ VRVVS+        S  LCGGT V +TG+I  
Sbjct: 331 SISTNLMSIDAAKKSGAMALFGEKYDEEVRVVSMG------ESIELCGGTRVKNTGDIKD 384

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           L                A + ++ ++ L+                    + ++EEI    
Sbjct: 385 L----------------AKSNEKYKNELL--------------------LNKLEEI---- 404

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                         NV+D+    +   N         D   LK + D L+ K  S II++
Sbjct: 405 --------------NVKDIRILLLKIYN---------DKVNLKGIYDNLKSKKTSIIILI 441

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 KK S+LI VT+D+ +++NA +L +    ++ G GGG   + AQ+ G N +  D+
Sbjct: 442 NTDKNNKKTSLLIGVTKDISNKYNAKELIQSCFSIINGKGGGNSEY-AQASGDNIDVEDK 500

Query: 888 AIAGVASF 895
            +  +  +
Sbjct: 501 ILDKIKEY 508


>gi|194750281|ref|XP_001957556.1| GF23971 [Drosophila ananassae]
 gi|190624838|gb|EDV40362.1| GF23971 [Drosophila ananassae]
          Length = 1011

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 236/811 (29%), Positives = 375/811 (46%), Gaps = 103/811 (12%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFLDHFTVSHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGSDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPGRL 136

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +          D E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKVLGIPADSECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D    +     GS E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHRPDL-----GSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVDHL 279
            ER+  VLQ K +NYD DLF  +    +QV      G +            N+R++ DH 
Sbjct: 251 FERLTAVLQNKHSNYDTDLFTPIFDGIQQVAKAPVYGGSFPDGANEALLDTNYRILADHA 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE
Sbjct: 311 RMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAKENLLTQLIPIVVETLGEAYPE 367

Query: 340 ----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLSHLGKDEI 381
                     LIQ +  + + LR S  + F + L       D  L+   G +    + ++
Sbjct: 368 MSAKQQAVVDLIQHEQEVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREFQV 427

Query: 382 ---------LNGDVAFKLYDTHG------LPLDIMQDILC--ARGLAGIDIISFNQALEE 424
                    + GD  +KL DT+G      L L  ++++ C   R  A + +        +
Sbjct: 428 QRSKFNNNTIPGDFLYKLTDTYGLTEESFLKLAELENMNCDLERYRAEVSLAKI-----K 482

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
            +S  R     L    TE+     + K    +    D      +  +      + PP+  
Sbjct: 483 AKSIQREEGASLYDLVTEQRIAEAQAKM-TKRLTATDNSHKYSYTFDKESSSYEIPPLR- 540

Query: 485 TNGVSSIVKAIVQQGEIVE------EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               + ++  ++   E+        +  +   + +V   + FY E+GGQ  D G  +   
Sbjct: 541 ----TRVMGLLLNDAEVSRTQGSRLQDPTTDTISLVTAASNFYYESGGQQSDGGKILVQN 596

Query: 539 IR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSL----VLTIDYQNRRQLSINH 587
                    L +  V K      VH   +   +   E+++     L +D   R+  + +H
Sbjct: 597 THQPDQPHLLDVISV-KNLNDCVVHVCRLSSPVDAFELAIGDDVELVVDPTQRQLNTCHH 655

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQN 646
           +ATHLL+ A+ T+      Q  S +T D  + +V    K I  ++++ IED +N +I   
Sbjct: 656 TATHLLNAAIRTLFDKVTYQVSSSVTSDQCKLEVGLLGKRIKKSDVQLIEDLINRVICAA 715

Query: 647 LPV-VTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            PV V R+   E    +    + G  Y ++ +R+V V+  +  ++S  LC GTH ++T E
Sbjct: 716 TPVKVERLCAAEVLQQNDITMVPGEVYPEQGLRLVHVQSPELHLNSKELCCGTHATNTSE 775

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +    IV+            A+ GQ A + L
Sbjct: 776 LSCFCIVNLKQTNRARFSFTAVAGQAAENVL 806


>gi|47213378|emb|CAF93331.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1043

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 176/445 (39%), Positives = 251/445 (56%), Gaps = 32/445 (7%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R+TF++FFQ K+GH L+PSS + P  DP+L+F N+GM  FK +  G   P      Y+ 
Sbjct: 30  VRSTFVDFFQQKHGHVLVPSSPVRPRGDPSLLFVNAGMNQFKPLLLGTADPRSAMARYRR 89

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL++VGR   HHTFFEMLG +SFG YFKE A  +AW LLT+ + +
Sbjct: 90  VVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGTWSFGDYFKE-ACLMAWSLLTEHYGI 148

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY++ +          DEE   +W  I G+  D+++     DNFW M ++GPCGPC
Sbjct: 149 AAERLYVSYFGGDTASGLPADEETRHIWLDI-GVPHDRLLPFGLKDNFWEMGDSGPCGPC 207

Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           +EI +D      GG   ++    +    +EIWNLVFMQ+ ++      +LP++S+DTGMG
Sbjct: 208 TEIHYDH----VGGRRAAALVNADHPDLVEIWNLVFMQYNRELDGSLRLLPQLSVDTGMG 263

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI------VNHRVIVDHLRSSS 283
           LER+  VLQ K +NYD DLF  L+ A +Q                 V +RV+ DH+R+ +
Sbjct: 264 LERLVRVLQGKRSNYDTDLFAPLLLAIQQAGPYGGGVGPAGAGRVDVAYRVVADHVRALA 323

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQ 342
             IADG+ P   G   VLRRI+RRA+ +   +    P  +  L+P +C  +G AYPEL +
Sbjct: 324 VCIADGVYPGMSGAELVLRRILRRAVRFCSEVLQAPPGTLASLVPTVCHILGDAYPELHK 383

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIM 401
               I   +   +  F  +L RG  L+   L     KD +    VA+ L+   G PLD++
Sbjct: 384 EADTIVNIINENEAHFLSSLQRGSRLIQHTLRKQDDKDGVFPAAVAWSLHRDLGFPLDLV 443

Query: 402 QDILCARGLAGIDIISFNQALEEQR 426
             +L  RG   +D    +Q + E +
Sbjct: 444 DLMLEERGFR-VDHQELDQLISESK 467



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 17/164 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPD----GLRFDVTHSKPITSA-----ELKSI 635
           + H+ THLL+ AL  +LG  V Q GS ++      GL+     S  +  A     EL+ +
Sbjct: 673 VKHTGTHLLNFALRKVLGPSVQQRGSHVSAHPPALGLQRPAAESCCVPQAALSVRELQEV 732

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEYEDGG 687
           +  V DII+ +  V ++ +  + A +      +   Y D VRVVS        ++ +  G
Sbjct: 733 DALVRDIISADQQVHSQEVPLQTARSIRGLRTVDEVYPDPVRVVSVGVPVSDLLDGQSDG 792

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             S  LC GTH+  TG I  L IVSE  +  G+ RI A+TGQ A
Sbjct: 793 QTSVELCCGTHLLRTGAIRDLVIVSERQVVKGMSRILAVTGQDA 836


>gi|167462223|ref|ZP_02327312.1| alanyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 572

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 340/605 (56%), Gaps = 43/605 (7%)

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+ Y ++LG  +P M  L+PALC  MG  Y E+++ +  IE+ +R+E+ERF +TL
Sbjct: 1   RLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKIIRTEEERFHETL 60

Query: 363 DRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
             GL +L  +++   K  +  + G  AFKLYDT+G P+D+ +D    +G+  +D   F  
Sbjct: 61  SDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQGMT-VDKEGFEA 119

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479
           +++EQR RARA      S   +     L +    ++F+GY DL+  +K +     ++   
Sbjct: 120 SMQEQRERARAARQDTDSMNVQ--GGPLADFTDKSEFVGYNDLVVPAKIIA----LMHNN 173

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             +D+ N           +GEI +         VV D+TPFYAE+GGQ+ D G       
Sbjct: 174 TMVDIVN-----------EGEICQ---------VVLDRTPFYAESGGQVSDKGTIRYGET 213

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++ +V K   G  VH  +VE+G  R       ++D   R  +  NH+ATHLLH AL+ 
Sbjct: 214 LLRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHTATHLLHKALNE 273

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +    LRFD +H   IT  EL+ +E  VN+ I QN+PV+ ++M  ++A
Sbjct: 274 VLGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIPVIIKLMPIDEA 333

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA AL G KY   VRVV V     G +S  LCGG HV++T EI    IVSES I +G
Sbjct: 334 KAMGAMALFGEKYGKVVRVVRV-----GDYSLELCGGCHVANTAEIGQFKIVSESGIGSG 388

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKRK 778
           +RRIEA+ G+ A +++  Q   LK  A  LK    +V  RV+ I  + ++L + I + R 
Sbjct: 389 VRRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMKELNREIESLRS 448

Query: 779 LQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              ++E  S      ++  +  ++  ++  D   L+ + D ++ +I SG+I+L G +  +
Sbjct: 449 KLSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSGVIVL-GAASGQ 507

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +++  VT+DL  +  +A  + + +A +  GGGGGGRP MAQ+GG + +K  +A+  V 
Sbjct: 508 KVNLVAAVTQDLTKKGLHAGQIVKAAASIC-GGGGGGRPDMAQAGGKDPSKLKEALLYVE 566

Query: 894 SFLKK 898
           +++++
Sbjct: 567 TYIQQ 571


>gi|149236429|ref|XP_001524092.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452468|gb|EDK46724.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 436

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 167/395 (42%), Positives = 239/395 (60%), Gaps = 33/395 (8%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            S++R+TFL++F+ K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 24  ASTVRSTFLDYFKSKRDHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPSSDFAK 83

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 84  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGWSWELLTEV 143

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY+T ++ DE        EA   W  + G++ D I+     DNFW M + GPC
Sbjct: 144 YGLEKDRLYVTYFEGDEKQGLEPDMEAKNFWLSV-GVAEDHILPGNAKDNFWEMGDQGPC 202

Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCSEI +D+     GG   +S    +    +E+WN+VF+Q+ +++      LP   IDT
Sbjct: 203 GPCSEIHYDR----IGGRNAASLVNMDDPNVLEVWNIVFIQYNRESDGSLRPLPSKHIDT 258

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277
           GMG ER+ +VLQ K++NYD D+F  +     ++TG++ Y G       + I   +RVI D
Sbjct: 259 GMGFERLVSVLQNKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIAD 318

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGS 335
           H+R+ +F I DG +P NEGRGYVLRRI+RR   Y R  + Y        L+  +  +   
Sbjct: 319 HVRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKE 378

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
            +PEL +    ++E L  E+  F KTLDRG  L +
Sbjct: 379 IFPELERGVADLKEILNEEELSFAKTLDRGEKLFE 413


>gi|195376313|ref|XP_002046941.1| GJ13159 [Drosophila virilis]
 gi|194154099|gb|EDW69283.1| GJ13159 [Drosophila virilis]
          Length = 1009

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 236/821 (28%), Positives = 376/821 (45%), Gaps = 127/821 (15%)

Query: 7   IRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR  F+++F  N  H+ + SS ++P  DPT+ F N+GM  FK +F G     Y+ V   Q
Sbjct: 17  IRKIFIDYFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKTVFLGTAAAPYKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPSRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A++++     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKLLGIPADLECFEIWRSL-GFPAERVLPFGCKDNFWEMGTTGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D     PG  P S E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHR---PGSGPNSVEQRAKLVNAGRADLTELWNLVFIQYNRNADGSITQLPARHVDTGMG 252

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVDHL 279
            ER+A +LQ K++NYD DLF  L      ++     G +            ++R++ DH 
Sbjct: 253 FERLAALLQNKSSNYDTDLFTPLFDGIHSLSKAPVYGGSFPDAQNSALLDTSYRILADHA 312

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE
Sbjct: 313 RMVTACLADGMLPDQNQK---LRRVLRKALSISEQVFGHEKLLSQLVPIVVETLGEAYPE 369

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEI----------------- 381
           +   +  + E +  E E +    +        VL+   K D+I                 
Sbjct: 370 MSTKQQAVIELILHEQEVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYREFQV 429

Query: 382 ---------LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                    + GD  +KL DT+GL  +          L   ++ + N  L+  R+     
Sbjct: 430 QRSNFPNNTIPGDFLYKLTDTYGLTEESF--------LKLAELENMNCDLDRYRA----- 476

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN------ 486
            L L           LK K        YDL    +      ++  +  P D ++      
Sbjct: 477 ELALA---------KLKTKEPQRSSGDYDLALQQRIADAQAQLTKRLAPTDNSHKYIYSY 527

Query: 487 ----------GVSSIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                      V+S V  ++Q    V     EE ++   + +V   + FY E+GGQ  D 
Sbjct: 528 DEANETYSIPTVTSRVLGMLQNDVEVSRTRLEEPLN--TLSIVTAASNFYYESGGQQSDL 585

Query: 532 GCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGI-------LRTEMSLVLTIDY 577
           G  +        +  +L++  V K      VH   V R I       L     + L +D 
Sbjct: 586 GKLLVRNTHKPEEPHQLEVVGV-KHLNDCVVH---VCRPITSADDFELAVGDEVQLEVDA 641

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIE 636
             R+  + +H+ATHLL+ A+ ++      Q  S ++ +  + ++    K I  A+++ IE
Sbjct: 642 MQRQLNTCHHTATHLLNAAIRSLFNKVTYQVSSAVSGEQCKLELGLLGKRIQKADVQHIE 701

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALC 694
           D +N  I    PV  + ++  D +      ++ G  Y ++ +R++ V+  +  + S  LC
Sbjct: 702 DLINRAICSATPVQVQELSAADVLQQNDITMVPGEVYPEQGLRLIKVQCPELSLSSKELC 761

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
            GTHV++T E+    IV+            A+ GQ A + L
Sbjct: 762 CGTHVTNTKELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 802


>gi|195337619|ref|XP_002035426.1| GM14698 [Drosophila sechellia]
 gi|194128519|gb|EDW50562.1| GM14698 [Drosophila sechellia]
          Length = 1012

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 239/812 (29%), Positives = 385/812 (47%), Gaps = 104/812 (12%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TFL+ F  N GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   F++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPFNIDPGRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A +I+     DNFW M+ TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMSATGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D    +     GS E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHRPDL-----GSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV------TGMKYEGNNI----VNHRVIVDHL 279
            ER+  VLQ K++NYD DLF  +    +Q       +G   +G N      ++R++ DH 
Sbjct: 251 FERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKAPVYSGSFPDGGNAAVLDTSYRILADHA 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE
Sbjct: 311 RMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYPE 367

Query: 340 ----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLSHLGKDEI 381
                     LI  +  + + LR S  + F + L       D  L+   G +    + ++
Sbjct: 368 MAAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQV 427

Query: 382 ---------LNGDVAFKLYDTHGLP------LDIMQDILC--ARGLAGIDIISFNQALEE 424
                    + GD  +KL DT+GL       L  ++++ C   R  A + +    +A   
Sbjct: 428 QRCKFSNNTIPGDFLYKLTDTYGLTEESFLKLAELENMNCDLERYRAEVSLAKI-KAKGN 486

Query: 425 QRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           QR  A      L +     +    L +  GAT            F KE      Q PP+ 
Sbjct: 487 QRETAGGSLCDLATEQRLSEAQAMLTKHLGATD---NSHKYAYSFHKESDSY--QIPPLK 541

Query: 484 LTNGVSSIVKAIVQQGEIVE------EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                + ++  ++   E+        +  S   + +V   + FY E+GGQ  D G  +  
Sbjct: 542 -----TRVLGMLLNDAEVSRTQGSRIQQPSTDLISIVTAASNFYYESGGQQSDGGKILVS 596

Query: 538 GIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSL----VLTIDYQNRRQLSIN 586
             +       L++  V K      VH   +       ++++     L +D Q R+  + +
Sbjct: 597 NHQQPEHPHSLEVISV-KHLNDCVVHVCKLSSPTDAFQLAIGDEVELLVDAQQRQLNTCH 655

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQ 645
           H+ATHLL+ A+ ++      Q  S +T +  + ++    K I  +++K IED +N +I  
Sbjct: 656 HTATHLLNAAIRSLFKKVTYQVSSSVTSNQCKLELGLLGKRIQKSDVKLIEDLINRVICS 715

Query: 646 NLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             PV  ++++  + +      ++ G  Y ++ +R+V+VE  +  + S  LC GTH ++T 
Sbjct: 716 AAPVEVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTS 775

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           E+    IV+            A+ GQ A + L
Sbjct: 776 ELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 807


>gi|256370739|ref|YP_003108564.1| putative alanyl-tRNA synthetase fragment [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009531|gb|ACU52891.1| putative alanyl-tRNA synthetase fragment [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 449

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 166/450 (36%), Positives = 258/450 (57%), Gaps = 38/450 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I+  FL+FF+K  H+++ S+SL+  +DP+LMFTN+GM  FK  F G + P Y  +T +QK
Sbjct: 6   IKKIFLDFFKKKNHQIIDSASLLAKDDPSLMFTNAGMNRFKKYFLGSKNPKYVRITNIQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHND+ +VGR   HHT FEMLGN+SFG YFK+ AI+ AW+LLTK F + +  +Y
Sbjct: 66  CLRITGKHNDISDVGRDKYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTKTFKIRKSNIY 125

Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T++        + D+E++K WK +  ++ ++I+      NFW M  TGPCG  SEI  D
Sbjct: 126 VTIFSGNINENLEFDKESYKYWKNL--INENQIVFFDKKHNFWEMGNTGPCGYSSEIHID 183

Query: 179 -----------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
                        + I  G P         IE+WNLVF++F +        L K  +DTG
Sbjct: 184 LREKKEKKKIEGKKLINKGHP-------LVIELWNLVFIEFFRTQNGNLEKLSKSHVDTG 236

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSF 284
           MG+ER+  VLQ K + YD D+F  LI+  E +TG  Y   E  +I   RV+ DH+R+  F
Sbjct: 237 MGIERLCMVLQNKKSTYDTDIFISLIKEIENITGKVYGKLEEEDIA-IRVLADHIRAIVF 295

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            I DGI+P+N   GY++R+++RR + Y  L L   +  +  L+  + +E  +   ++ + 
Sbjct: 296 AIKDGIIPSNNKSGYIIRKLLRRTIVYYFLYLNIKKSFLYKLVKVVLSEKKNENSKIKEN 355

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIM 401
              I   ++ E+  F K L +       ++S L K+   I+NG + F+LYDT+GLP + +
Sbjct: 356 --FISNLIKKEELLFFKNLFKVSKKFYKIISSLKKEGKTIINGKIIFELYDTYGLPFE-L 412

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARA 431
            ++   +    ID  SF + + +Q+ R++ 
Sbjct: 413 ANLFALKNNFIIDKFSFEKEMLKQKLRSKT 442


>gi|48927|emb|CAA42581.1| alanyl-tRNA synthetase [Sinorhizobium meliloti]
          Length = 201

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 139/201 (69%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D++ F LWKKI+GLS D IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDDTFGLWKKIAGLSDDHIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEI 200
           + I GG PGS+EE G+R+IEI
Sbjct: 181 DHIWGGPPGSAEEDGDRFIEI 201


>gi|330837065|ref|YP_004411706.1| alanyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748968|gb|AEC02324.1| alanyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 598

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/440 (38%), Positives = 259/440 (58%), Gaps = 24/440 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+EFF   GH  +P +SLIP NDPT++FT +GM P      G E P    +   QK
Sbjct: 10  LRSKFIEFFVSKGHVQIPCASLIPENDPTVLFTTAGMHPLVPYIMGAEHPAGTRLVDYQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R G    D+D+VG  + H TFFEMLGN+S G YFK+ +I  +++ LTK  D+D  RL 
Sbjct: 70  CIRTG----DIDSVGDPH-HLTFFEMLGNWSLGDYFKKESIGFSFEFLTKVLDIDVARLS 124

Query: 127 ITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179
           +TV+        DEE+   W K+ G+  ++I  +   DN+W  A ETGPCGP SEIFFD 
Sbjct: 125 VTVFVGDADVPRDEESAATW-KLLGIPEERIYYLPREDNWWGPAGETGPCGPDSEIFFDT 183

Query: 180 GECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P   PGSS+   RY EIWN VFM ++++       + +  +DTGMG+ER   VL
Sbjct: 184 RRQTNNPDSRPGSSD--GRYFEIWNNVFMGYKKEADGSYGEMTRKCVDTGMGIERTIAVL 241

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD--GILPA 293
           Q K + YD ++F+ +I A E ++G  Y  N  + ++ R+I DH+R+S F++ D  G+ P+
Sbjct: 242 QGKQSVYDTEVFQPVIHAIEGLSGKTYGENEQDDISIRIIADHIRTSVFILGDQKGVAPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N G+GY+LRR++RRA+ + R LG     +  L   +    G  YPE+I+ K  +   L +
Sbjct: 302 NVGQGYILRRLIRRAVRHGRKLGIEGKFLSGLASPVFELYGKPYPEIIENKKFVIAELDA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F +TL +G    + V   +  G    ++G VAF+LYDT+G P+++  ++    G+ 
Sbjct: 362 EEEKFSETLAKGEKEFEKVRLGMEKGNSRQISGRVAFRLYDTYGFPIELTTELATEHGMT 421

Query: 412 GIDIISFNQALEEQRSRARA 431
            +D   F +A ++ +  +RA
Sbjct: 422 -VDTEGFAEAFKKHQEISRA 440



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 89/140 (63%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL T+LG+HV Q GS IT + LRFD TH +P+T  +++ +ED VN+ I +N
Sbjct: 461 HTATHLLHQALRTVLGTHVGQKGSNITVERLRFDFTHPEPMTKEQIQQVEDIVNEQIKRN 520

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V  +    E+A   GA A   +KY + V V S+     G  S  +CGG HV+ TG++ 
Sbjct: 521 LTVTKKTETLEEAQKEGAIAFFESKYGELVTVYSI-----GNFSKEVCGGPHVTHTGDMG 575

Query: 707 LLYIVSESSIRAGIRRIEAI 726
             +I+ E S  AG+RRI+A+
Sbjct: 576 HFHILKEQSSSAGVRRIKAV 595


>gi|301107111|ref|XP_002902638.1| alanyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262098512|gb|EEY56564.1| alanyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 332

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 216/318 (67%), Gaps = 22/318 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPV----YQ 59
           + +R+ FL+FF+  GH ++PS+SL+P   D +L+F N+GMVPFK  F G +       Y 
Sbjct: 25  TELRSRFLQFFESQGHRIVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGAKARGYS 84

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFK++AI + W  LT+E +
Sbjct: 85  RATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKKQAITMCWRFLTQELE 144

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RL++TV   D+EA +LWK+I+GL   KI  +  +DNFW+M ++GPCGPCSE+F+D 
Sbjct: 145 LPIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCSEVFWDL 204

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQ-FEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G+ I       ++  ER++E+WNLVFMQ F  +   E   LP  S+DTGMGLER+A+VLQ
Sbjct: 205 GDHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLERVASVLQ 257

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NY  D+F  L+  +E  T  K         R++ DHLR++  L+ DG+ P+N GRG
Sbjct: 258 GVPSNYHTDVFVPLL--TEVATRSK-------TLRIVSDHLRATYALLQDGVFPSNIGRG 308

Query: 299 YVLRRIMRRAMCYARLLG 316
           YVLRRI+RRA+ +A+ LG
Sbjct: 309 YVLRRIIRRAIRHAQQLG 326


>gi|309243075|ref|NP_001035124.2| alanyl-tRNA synthetase, cytoplasmic isoform 2 [Danio rerio]
          Length = 433

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 163/401 (40%), Positives = 242/401 (60%), Gaps = 31/401 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   AAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMARL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+EF
Sbjct: 67  RRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQEF 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPCG
Sbjct: 127 GIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDTG
Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+
Sbjct: 302 ARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG+
Sbjct: 362 PELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGE 402


>gi|66911311|gb|AAH97014.1| Zgc:113920 [Danio rerio]
 gi|213624850|gb|AAI71667.1| Zgc:113920 protein [Danio rerio]
 gi|213624852|gb|AAI71669.1| Zgc:113920 protein [Danio rerio]
          Length = 433

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/400 (40%), Positives = 241/400 (60%), Gaps = 31/400 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   AAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMARL 66

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+EF
Sbjct: 67  RRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQEF 126

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPCG
Sbjct: 127 GIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI +D+     GG   +   + +    +EIWNLVF+QF ++++     LPK SIDTG
Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    +A ++ TG +     +         + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+
Sbjct: 302 ARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
           PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG
Sbjct: 362 PELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLG 401


>gi|135091|sp|P24075|SYA_RHILV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|48924|emb|CAA42579.1| alanyl-tRNA synthetase [Rhizobium leguminosarum]
          Length = 201

 Score =  304 bits (779), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/201 (70%), Positives = 164/201 (81%), Gaps = 1/201 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR GGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRVGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSSEE-GERYIEI 200
           E + GG PGS EE G+R++E 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEF 201


>gi|329737303|gb|EGG73557.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 552

 Score =  303 bits (777), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 197/592 (33%), Positives = 317/592 (53%), Gaps = 58/592 (9%)

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDE 380
           M  L+  +   M   YP +      I+  ++SE+ERF +TL+ GL +L+ ++      D+
Sbjct: 1   MYKLVDIVADIMEPYYPNVKDKSNFIKRVIKSEEERFHETLEEGLTILNELIKEAKNSDQ 60

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-----AHSLG 435
           ++ G  AFKLYDT+G P+++ +++     L+ +D+ +F Q +++QR RAR     + S+ 
Sbjct: 61  VIKGHDAFKLYDTYGFPIELTEELATQENLS-VDMPTFEQEMQQQRDRARQARQNSQSMQ 119

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
           + S         LK     +QF+GY+                       T    S++  I
Sbjct: 120 VQSEV-------LKNIQDESQFVGYE-----------------------TTDYQSLITHI 149

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +  GE V+   +G+ +  +  +TPFYA +GGQ+ D G    +   + +TDV K   G  +
Sbjct: 150 IYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKGTVGNESFEINVTDVTKAPNGQNL 209

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H  IV+ G       +   ++ ++RR +  NHSATHLLH AL  +LG HV+Q GS + P+
Sbjct: 210 HKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHLLHAALKEVLGDHVNQAGSLVEPE 269

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            LRFD +H  P+T  E+  +E  VN+ I + + V  + M+ E+A + GA AL G KY D 
Sbjct: 270 RLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVCIQEMSIEEAKSIGAMALFGEKYGDI 329

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRVV++        S  LCGG HV++T EI L  IVSES   AG+RRIEA+TG+ A  HL
Sbjct: 330 VRVVNM-----APFSIELCGGIHVNNTAEIGLFKIVSESGTGAGVRRIEALTGKGAFLHL 384

Query: 736 MGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRKLQL------NVEDLSC 788
              + +  ++ + LKV   N VV +V+++ EE + L     +R  ++      N+E+   
Sbjct: 385 EEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLLKQLEQRNKEITSLKMGNIEE--- 441

Query: 789 HKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            ++  +N +  + +EV+    K ++S MD  + K+Q  II+LVG   + K SV+  V + 
Sbjct: 442 -QVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIVLVG-QVDGKVSVIATVPKS 499

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L ++  A DL +    ++ GG GGGRP MAQ GG    K  +A+  +  ++K
Sbjct: 500 LTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKITEALRFIKDYIK 550


>gi|309807409|ref|ZP_07701372.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308169331|gb|EFO71386.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 632

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 225/648 (34%), Positives = 354/648 (54%), Gaps = 55/648 (8%)

Query: 251 HLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
            L+  +E+++ G +Y     + V  ++I DH+R+ SF IADG LP+N GRGYVLRR++RR
Sbjct: 8   QLLSKTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALPSNSGRGYVLRRLIRR 67

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           A    + LG     +  L+  +   M S YPE++  +  +E+ +++E++RF +TL  GL 
Sbjct: 68  ADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIKNEEDRFQETLSSGLN 127

Query: 368 LLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           LLD ++S     K   L+G  AFKL+DT+G P ++  +     GL  +D   F+  ++ Q
Sbjct: 128 LLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGLV-VDKEEFDAEMKAQ 186

Query: 426 RSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           + RAR     L S G+ +    ++K++   + F  + L       +ED   L        
Sbjct: 187 KERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL-------QEDHAKLLD------ 230

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL--Q 542
                     IV   ++V++ V+G++  ++FD+TPFYAE GGQ+ D G        L   
Sbjct: 231 ----------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVADHGEIFNQAGELVAH 279

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + DVQ       +H   +   + + E   VL +D Q RR L  NH+ATHLLH AL  +LG
Sbjct: 280 VIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNHTATHLLHAALRQVLG 338

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +PV T I ++E  +  
Sbjct: 339 THTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEIPVKTTITDQETGLKM 398

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY+++VRVV +        S   CGGTH  +T +I +L IVSES+I AG+RR
Sbjct: 399 GALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGMLKIVSESAIGAGMRR 453

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEEIWEEYRKLQLIHAKR 777
           I A+TGQ+A  + +  DE LK +   +K +     Q  VV   + + EE + ++ + ++ 
Sbjct: 454 IVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDALREEQKTVEQLKSQI 513

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLVGISKEK 834
             Q    DL+   I D+N +  I   VD     +L+ + D  + +  S +++L G +   
Sbjct: 514 N-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQNLSDVLIL-GTTVAG 570

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           KA++LI + +  +     A DL +++A +  GGGGGGRP+MAQ+GG N
Sbjct: 571 KANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAGGKN 617


>gi|312373153|gb|EFR20960.1| hypothetical protein AND_18235 [Anopheles darlingi]
          Length = 998

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 240/793 (30%), Positives = 388/793 (48%), Gaps = 114/793 (14%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQA 60
           + + IR  F+++F  K+ H L+ SSSL+P +D T+ F N+GM  FKN+F G  ++P  +A
Sbjct: 38  SANEIRRQFIDYFTIKHNHRLIRSSSLVPFSDGTIAFVNAGMNQFKNVFLGTADRPCPRA 97

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V + QKCVR GGKHNDL  VG  + HHTFFEMLGN+SFG YFK  A ++A DLL   + +
Sbjct: 98  VNS-QKCVRVGGKHNDLSVVGTDSYHHTFFEMLGNWSFGDYFKREACEMACDLLRTVYHI 156

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  R+Y+T +          DEE   +W  + G+  ++++     DNFW M  +GPCGPC
Sbjct: 157 DMERVYVTYFGGDARLNLPADEECRDIWLSL-GIPRERVLPFGARDNFWEMGNSGPCGPC 215

Query: 173 SEIFFD----------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI---L 219
           +EI  D          + + +  GLP  +       EIWN+VF+Q+ +  + +      L
Sbjct: 216 TEIHLDLSDQYRDTGSRRQYVNAGLPDLT-------EIWNIVFIQYNRSLEGDGGAIRNL 268

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHL 279
           P+  +DTGMGLER+   LQ K +NYD DLF  ++Q  +QV   +  G     HR  + H+
Sbjct: 269 PQRHVDTGMGLERLVAHLQGKLSNYDTDLFTPILQRIQQV---QIAG----THRWHIHHI 321

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-------RLLGYTEPLMMHLLPALCTE 332
                              + LRR++R+++  A       +LL  T P+++  L  +  E
Sbjct: 322 IPIC---------------HKLRRVIRKSLALASGTFERPKLLEETIPVVVETLGEMYPE 366

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--------VLSHLGK----DE 380
           MG+    ++Q   +IE    S D+   K       LL          VL H G      E
Sbjct: 367 MGNNLSTVLQ---IIEHEQHSYDKLCSKRSAETATLLKCYPQLEESEVLDHAGLPGAIKE 423

Query: 381 ILNGDVA-------FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           ++  +V+        K+YDT+GL     +++L   G    +++ F+    +    A    
Sbjct: 424 LVESNVSRLDGVKIHKMYDTYGLD----EELLVKLG----EMLKFSLDFRDYERYAGE-- 473

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI-- 491
             L  G   ++   L+E+  A Q +  D + G++         C++      N    I  
Sbjct: 474 --LKHGFKHELASRLEERLSAFQQL-RDSIEGAQL----EATRCERKYNYAYNAEKRIYE 526

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKK 549
           V     +  ++ +  +     VV +++ FY E+GGQ  DTG  I     + ++IT V   
Sbjct: 527 VAPCSTRVSLLLDDPARDLWHVVTERSNFYCESGGQQSDTGRLILPEGNVSIEITSVND- 585

Query: 550 AEGIFVHHAIVERGILRTEM--SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
               F+ H+I ++  +R  +   + L +D   R  L++NH+ATHLL+  +  ++   + Q
Sbjct: 586 -HNGFIVHSIAKQPNIRLSIGDPVELQVDASRRTSLTLNHTATHLLNAIVRKVVPLPMCQ 644

Query: 608 NGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             S +T  GLR ++  S   +T  ++ +IE  +  +I +N PV  ++ N  +   +    
Sbjct: 645 RSSSVTEKGLRLELAISGDKLTLEQIAAIESEIRSVIDRNEPVSVKVCNATELDLTSVTI 704

Query: 667 LLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           + G  Y +R +RV+S+    GG  S  LC GTH + TGE+    I S +  + G     A
Sbjct: 705 VPGETYPERGLRVISI---GGGYTSQELCCGTHATGTGELQDFAITSVTQSKNGCFTFHA 761

Query: 726 ITGQRARS-HLMG 737
           + G  A+  HL+G
Sbjct: 762 VAGPAAKKVHLLG 774


>gi|195491933|ref|XP_002093777.1| GE21485 [Drosophila yakuba]
 gi|194179878|gb|EDW93489.1| GE21485 [Drosophila yakuba]
          Length = 1012

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 225/807 (27%), Positives = 378/807 (46%), Gaps = 94/807 (11%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TFL+ F  N GH+ + SS ++P  DPT+ F N+GM  FK++F G     +Q V   Q
Sbjct: 17  IRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHQRVANSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPGRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D    +     GS E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHRPDL-----GSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGTISQLPAHHVDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT-------GMKYEGNNIV---NHRVIVDHL 279
            ER+  VLQ K++NYD DLF  +    +Q             +GN  +   ++R++ DH 
Sbjct: 251 FERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKSPVYSGSFPVDGNGALLDTSYRILADHA 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE
Sbjct: 311 RMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAQDKLLTQLVPIVVETLGEAYPE 367

Query: 340 ----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLSHLGKDEI 381
                     LI  +  + + LR S  + F + L       D  L+   G +    + ++
Sbjct: 368 MAAKQQAVIDLISHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQV 427

Query: 382 ---------LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                    + GD  +KL DT+GL  +    +     +   D+  +   +   + +A+ +
Sbjct: 428 QRSKFPNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLERYRAEVNLAKIKAKGN 486

Query: 433 SLGLGSGT----TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
              +  G+      +   +  +     +    D      +  +      Q PP+      
Sbjct: 487 QREIAGGSLCDLANEQRIAEAQAMLTKRLAPTDNSHKYAYSFDKASDSYQIPPLK----- 541

Query: 489 SSIVKAIVQQGEIVE------EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-- 540
           + ++  ++   E+        +  S   + +V   + FY E+GGQ  D G  +    +  
Sbjct: 542 TRVLGMLLNDAEVSRTQGSRIQQPSTDLISIVTAASNFYYESGGQQSDGGKILVRNHQQP 601

Query: 541 -----LQITDVQKKAEGIFVHHAIVERGILRTEMSL----VLTIDYQNRRQLSINHSATH 591
                L +  V K      VH   +       ++++     L +D Q R+  + +H+ATH
Sbjct: 602 EHPHLLDVISV-KHLNDCVVHVCKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATH 660

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVV 650
           LL+ A+ ++      Q  S +T D  + ++    K +  ++++ IED +N +I    PV 
Sbjct: 661 LLNAAIRSLFKKVTYQVSSSVTSDQCKLELGLLGKRLQKSDVQLIEDLINRVICSATPVQ 720

Query: 651 TRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
            ++++  + +      ++ G  Y ++ +R+V+VE  +  + S  LC GTH ++T E+   
Sbjct: 721 VQLLSAAEVLQQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSSF 780

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHL 735
            IV+            A+ GQ A + L
Sbjct: 781 CIVNLKQTNRARFAFTAVAGQAAENVL 807


>gi|328947373|ref|YP_004364710.1| alanyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447697|gb|AEB13413.1| alanyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 605

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 259/450 (57%), Gaps = 21/450 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R+ ++EFF+   H  +   SLIP NDP+++FT +GM P      G++ P    +T 
Sbjct: 3   ANELRSKYIEFFKSKNHVEISGQSLIPENDPSVLFTTAGMHPLVPYLLGEKHPAGTRLTD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R G    D+D VG  + H T FEMLGN+S G YFK+ +I  +++ LT  K   LD
Sbjct: 63  YQKCIRTG----DIDEVGDPS-HLTCFEMLGNWSLGDYFKKESIGFSYEFLTSPKWLGLD 117

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            R++ +TV+        DEEA   WK+ +G+  DKI  +  +DN+W+   TGPCGP +EI
Sbjct: 118 PRKISVTVFAGDDNAPRDEEAATYWKE-NGMPEDKIAYLPASDNWWAAGPTGPCGPDTEI 176

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F+  GE +P        + E ++EIWN VFMQ+ + +++    LPK ++DTGMGLER   
Sbjct: 177 FYWVGEGLPPAGSNKGTDSENWMEIWNNVFMQYNRVDEKTLVPLPKKNVDTGMGLERTNC 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIAD--GIL 291
           +LQ KT+ Y  ++F+ +I   E+++  KY  +   +   R+I DH RS+ F++ D  G+ 
Sbjct: 237 ILQGKTSVYLTEVFQPIIAKIEELSSYKYGTDEEKDRSVRIIADHSRSAVFILGDQKGVS 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N G GYVLRR++RRA+ +   LG  +  +  +  A+      AYPEL Q K  I   L
Sbjct: 297 PSNVGAGYVLRRLIRRAVRHGMKLGIEKNFLADIAQAVIENFKCAYPELEQNKEKIFTEL 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+ +F  TL +G      +L +L K+  + ++G +AF+LYDT G PL++ Q++    G
Sbjct: 357 SAEENKFRDTLRKGEAEFQKLLPNLMKNPKKEISGKIAFRLYDTFGFPLELTQELGAENG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSG 439
              +D+  F +A  + +  ++    G   G
Sbjct: 417 FT-VDVEGFKEAERKHQEASKTQDAGAAKG 445



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 1/140 (0%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  +LG  V+Q GS IT + +RFD T  +P+T  E++ +ED VN+ I ++
Sbjct: 458 HTATHLLQQALVNVLGDKVAQKGSNITNERMRFDFTFDRPMTKEEIQKVEDIVNEQIKKD 517

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M  E A A GA AL   KY + V+V ++  +D    S  +CGG HV  T +I 
Sbjct: 518 LPVTMEVMPLEKATAEGARALFTNKYGEDVKVYTIGEKDNWF-SKEVCGGPHVQHTAQIG 576

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  AG+RRI A+
Sbjct: 577 EFKIQKEQSSSAGVRRIRAV 596


>gi|332026963|gb|EGI67059.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 1085

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 244/821 (29%), Positives = 375/821 (45%), Gaps = 129/821 (15%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR  FL++F K+  H  + SS + P  D ++ F N+GM  FK IF    KP    V   Q
Sbjct: 22  IRNEFLDYFTKDLKHSFIRSSPVSPITDHSVAFINAGMNQFKGIFLDYYKPPVTKVVNSQ 81

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R GGKHNDL  VG+ + HHTFFEMLGN+SFG YFKE A   AW+LLT  +D+    L
Sbjct: 82  KCIRVGGKHNDLSIVGKDSYHHTFFEMLGNWSFGDYFKEDACSYAWNLLTNVYDIPTEYL 141

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +          D E   +W ++ GL   K++     DNFW M  +GPCGPC+EI  
Sbjct: 142 YVTYFGGNEELGMSPDLECKDIWLRL-GLPEHKVLPFGMRDNFWEMGVSGPCGPCTEIHV 200

Query: 178 DQGECIPGGLPGSSEEGER-------YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           D        +  S+ + ER        +E+WN+VF+Q E+        LP   IDTGMGL
Sbjct: 201 DY-------MKRSTNQAERVNKGYADLMELWNIVFIQCERLTNGCIVPLPNHHIDTGMGL 253

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYE---GNNIVN-------HRVI 275
           ER+ T LQ K +NYD DLF+ L  A ++ +       K++   G  +V        +R++
Sbjct: 254 ERLVTFLQGKKSNYDTDLFQPLFDAIQKHSNAPEYKGKFDDDTGKTMVTELSLDYGYRIL 313

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
            DH R  +  +AD +LP    +   LR+I+R AM           ++  L   +   +G 
Sbjct: 314 ADHARMITIALADDMLPEQHPK---LRKILRHAMDIGEKTFRKSGIVSELACNVADNLGV 370

Query: 336 AYPE----LIQAKLLI---EETLRSEDERFGKTLDRGLV---------------LLDG-- 371
            YPE    L Q + +I   EE L+      GK  ++ +                L+DG  
Sbjct: 371 TYPELHTNLKQVQKIIDFEEELLKRLRNTSGKMWNKMIKTRPELIAVTDWMAPGLVDGYK 430

Query: 372 ----VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
               +L  L K  +L+G VAFKLYDT+GL  + + ++     L   D I F + L+ +R 
Sbjct: 431 DLQSMLKELRKTNVLSGIVAFKLYDTYGLNSETIAELAQIECLY-FDEIDFEKQLDNRRY 489

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           ++R   +GL   +T       KE  G        +L+ +   K D             NG
Sbjct: 490 QSR---IGLDKHST----VITKESLG--------ILKKNHVPKTDDSFKYNYT----YNG 530

Query: 488 -------VSSIVKAIVQQGEIV----------------------EEAVSGQKVEVVFDQT 518
                  +SS +  I+  GE+V                      E   S  K+ ++ D+T
Sbjct: 531 NIYEFPVLSSKLIGIIVNGELVASKNYSDIKTNNTNNKTVVNIDEILNSTNKIGIILDKT 590

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSL------ 571
             Y+  GGQ+ D G      +   I +V +K  G  +H     +  L  +E+ L      
Sbjct: 591 ICYSLEGGQVSDKGNIRIKNLLFNIDNV-RKVNGYVIHSGYFAKTDLSISELHLQIDDDC 649

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSA 630
           ++ I+   R     +H+A HLL+ AL  ++   + Q G  +  D L+F      + +T  
Sbjct: 650 LVNIESNIRIGAMKHHTAAHLLNAALKQVMQV-IYQRGCTVDMDSLKFQFNSLGEQLTLE 708

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++K+IED +N++I        + +N  + +      LL  +      +  VE     + +
Sbjct: 709 QMKTIEDCINNVIQSRAVTTVQTVNSLELLKQNDVMLLPGEIYPYTDIKIVEINTNDLKA 768

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              C GTHV +T  +     ++ +S  A  R ++A+ G  A
Sbjct: 769 KETCCGTHVHNTDVLQHFCFLTYTSKGATKRIVKAVVGPEA 809


>gi|194866940|ref|XP_001971973.1| GG15263 [Drosophila erecta]
 gi|190653756|gb|EDV50999.1| GG15263 [Drosophila erecta]
          Length = 1012

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 232/816 (28%), Positives = 383/816 (46%), Gaps = 112/816 (13%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TFL+ F  N GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVANTQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPGRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D    +     GS E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHRPDL-----GSVEQRAKLVNAGRCDLTELWNLVFIQYNRHADGSISRLPAHHVDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNI---------VNHRVIVDHL 279
            ER+  VLQ K++NYD DLF  L    +Q      Y G+            ++R++ DH 
Sbjct: 251 FERLTAVLQNKSSNYDTDLFTPLFDGIQQAAKTPAYSGSFPDAGSAALLDTSYRILADHA 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE
Sbjct: 311 RMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFGHDKLLTQLVPVVVETLGEAYPE 367

Query: 340 ----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLS------- 374
                     LI  +  + + LR S  + F + L       D  L+   G +        
Sbjct: 368 MAAKQQAVIDLISHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQV 427

Query: 375 HLGK--DEILNGDVAFKLYDTHGLP------LDIMQDILCARGLAGIDIISFNQALEEQR 426
             GK  +  + G+  +KL DT+GL       L  ++++ C       D+  +   +   +
Sbjct: 428 QRGKFPNNTIPGEFLYKLTDTYGLTEESFLKLAELENMSC-------DLERYRAEVSLAK 480

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS--------KFMKEDRKVLCQ 478
            +A++    +  G+   +  + +++    Q +    L  +         F KE      Q
Sbjct: 481 IKAKSSQREIPGGSLCDL--ANEQRIAEAQAMLTKRLAPTDNSHKYAYSFDKESNSY--Q 536

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVE------EAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            PP+      + +V  ++   E+        +  +   + +V   + FY E+GGQ  D G
Sbjct: 537 IPPLK-----TRVVGMLLNDAEVSRTQGSRIQQPTTDFISIVTAASSFYYESGGQQSDGG 591

Query: 533 CAI----GDGIRLQITDV--QKKAEGIFVHHAIVERGILRTEMSL----VLTIDYQNRRQ 582
             +           + DV   K      VH   +       ++++     L +D Q R+ 
Sbjct: 592 KILVRSHQQPAHPHLLDVISVKYLNDCVVHVCKLSSPTDAFQLAIGDEVELQVDAQQRQL 651

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVND 641
            + +H+ATHLL+ A+ ++      Q  S +T    + ++    K I  ++++ IED +N 
Sbjct: 652 NTCHHTATHLLNAAIRSLFKKVTYQVSSSVTSGQCKLELGLLGKRIQKSDVQLIEDLINR 711

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
           +I    PV  ++++  + +      ++ G  Y ++ +R+V+VE  +  + S  LC GTH 
Sbjct: 712 VICSATPVQVQVLSAAEVLQQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHA 771

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           ++T E+    IV+            A+ GQ A + L
Sbjct: 772 TNTSELSSFCIVNLKQTNRARFAFTAVAGQAAENVL 807


>gi|198467159|ref|XP_001354280.2| GA18318 [Drosophila pseudoobscura pseudoobscura]
 gi|198149531|gb|EAL31333.2| GA18318 [Drosophila pseudoobscura pseudoobscura]
          Length = 1013

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 233/818 (28%), Positives = 381/818 (46%), Gaps = 117/818 (14%)

Query: 7   IRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TF++FF  N  H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFIDFFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK+ A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKQEACAMALELLRGPYNIDPGRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKLLGIPADMECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGPCTEIHI 195

Query: 178 ----------DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
                     D+G+ +  G            E+WNLVF+Q+ +        LP   +DTG
Sbjct: 196 DHRPELGSVADRGKLVNAG-------RSDLTELWNLVFIQYNRNPDGSISQLPAHHVDTG 248

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVD 277
           MG ER+A +LQ K++NYD DLF  L    +Q++     G +            ++R++ D
Sbjct: 249 MGFERLAAILQSKSSNYDTDLFSPLFDGIQQLSKAPVYGGSFPETSNAALLDTSYRILAD 308

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AY
Sbjct: 309 HARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHEKLLSQLVPIVVETLGEAY 365

Query: 338 PE----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLSHLGKD 379
           PE          LI  +  + + LR S  + F + L       D  L+   G +    + 
Sbjct: 366 PEMSAKQEAVIDLINHEHDVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREF 425

Query: 380 EI---------LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           ++         + GD  +KL DT+GL  +          LA ++    N   +  R RA 
Sbjct: 426 QVQRCKFPNNTIPGDFLYKLTDTYGLTEESF------LKLAELE----NMNCDLDRYRAE 475

Query: 431 AHSLGLGSGTTEK-----IWFSLKEKYGATQFIGYDLLRGS-KFMKEDRKVLCQKPPIDL 484
                + S  +++        +L+++    Q      LR +    K       +     +
Sbjct: 476 VSLAKIKSKESQREDGGICDVALEQRIAEAQATLTKRLRPTDNSHKYVYSFDSENESYKI 535

Query: 485 TNGVSSIVKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
               S +V  ++   E+     S        + +V   + FY E+GGQ  D G       
Sbjct: 536 PTLRSRVVGMLLNDAEVSRTQGSRLQDTSDTLSIVTAASNFYYESGGQQSDAG------- 588

Query: 540 RLQITDVQKKAEG------IFVHH---AIVERGILRT------EMSLVLTIDYQ----NR 580
           ++ +++  K  +       I V H    +V    L        E+++   ++ Q     R
Sbjct: 589 QILVSNAHKPEQPHHLLNVIRVKHLNDCVVHVCRLAAPADDHFEVAIGDEVELQVDSGTR 648

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNV 639
           +  + +H+ATHLL+ A+ ++      Q  S +T +  + ++    K I  A+++ IED +
Sbjct: 649 QLNTCHHTATHLLNAAIRSLFNKVTYQVSSSVTSEQCKLELGLLGKRIQKADVQLIEDLI 708

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGGT 697
           N II     V   +++  D +      ++ G  Y ++ +R++SV+  D  + S  LC GT
Sbjct: 709 NRIICSATTVQVELVSAADVLQENDITMVPGEVYPEQGLRLISVQCPDMQLSSKELCCGT 768

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           HV++T E+    IV+            A+ GQ A + L
Sbjct: 769 HVTNTSELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 806


>gi|6176438|gb|AAF05591.1|AF188716_1 alanyl-tRNA synthetase [Drosophila melanogaster]
          Length = 1012

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 237/819 (28%), Positives = 378/819 (46%), Gaps = 118/819 (14%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TFL+ F  N GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPGRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D    +     GS E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHRPDL-----GSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV------TGMKYEGNNI----VNHRVIVDHL 279
            ER+  VLQ K++NYD DLF  +    +Q       +G   +G N      ++R++ DH 
Sbjct: 251 FERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHA 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE
Sbjct: 311 RMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYPE 367

Query: 340 ----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLSHLGK--- 378
                     LI  +  + + LR S  + F + L       D  L+   G +    +   
Sbjct: 368 MAAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQM 427

Query: 379 ------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                 +  + GD  +KL DT+GL  +          L   ++ + N  LE  R+     
Sbjct: 428 QRCKFSNNTIPGDFLYKLTDTYGLTEESF--------LKLAELENMNCDLERYRAEVNLA 479

Query: 433 SLGLGSGTTEKIWFSL-----KEKYGATQFIGYDLLRGS--------KFMKEDRKVLCQK 479
            L       E    SL     +++    Q +    L  +         F KE      Q 
Sbjct: 480 KLKAKGNQRETAGGSLCDLATEQRIAEAQAMLTKRLTPTDNSHKYTYSFDKESDSY--QI 537

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ--------TPFYAEAGGQLGDT 531
           PP+      + ++  ++   E+      G +++  F          + FY E+GGQ  D 
Sbjct: 538 PPLK-----TRVLGMLLNDAEV--SRTQGSRIQQPFTDLISIVTAGSNFYYESGGQQSDG 590

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHH---AIVERGILRTEM---------SLVLTIDYQN 579
           G  +      Q  D     + I V H    +V    L +            + L +D Q 
Sbjct: 591 GKILVSN--HQQPDHPHSLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQ 648

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDN 638
           R+  + +H+ATHLL+ A+ ++      Q  S ++ D  + ++    K I   +++ IED 
Sbjct: 649 RQLNTCHHTATHLLNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDL 708

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGG 696
           +N +I    PV  ++++  + +      ++ G  Y ++ +R+V+VE  +  + S  LC G
Sbjct: 709 INRVICSAAPVEVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCG 768

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           TH ++T E+    IV+            A+ GQ A + L
Sbjct: 769 THATNTSELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 807


>gi|24658214|ref|NP_523932.2| mitochondrial alanyl-tRNA synthetase [Drosophila melanogaster]
 gi|74870584|sp|Q9VRJ1|SYAM_DROME RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|7295490|gb|AAF50804.1| mitochondrial alanyl-tRNA synthetase [Drosophila melanogaster]
 gi|21711683|gb|AAM75032.1| LD11251p [Drosophila melanogaster]
 gi|25012817|gb|AAN71499.1| RE74040p [Drosophila melanogaster]
 gi|220943558|gb|ACL84322.1| Aats-ala-m-PA [synthetic construct]
          Length = 1012

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 237/819 (28%), Positives = 378/819 (46%), Gaps = 118/819 (14%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TFL+ F  N GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPGRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D    +     GS E+  + +        E+WNLVF+Q+ +        LP   +DTGMG
Sbjct: 196 DHRPDL-----GSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV------TGMKYEGNNI----VNHRVIVDHL 279
            ER+  VLQ K++NYD DLF  +    +Q       +G   +G N      ++R++ DH 
Sbjct: 251 FERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHA 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYPE
Sbjct: 311 RMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYPE 367

Query: 340 ----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLSHLGK--- 378
                     LI  +  + + LR S  + F + L       D  L+   G +    +   
Sbjct: 368 MAAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQM 427

Query: 379 ------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                 +  + GD  +KL DT+GL  +          L   ++ + N  LE  R+     
Sbjct: 428 QRCKFSNNTIPGDFLYKLTDTYGLTEESF--------LKLAELENMNCDLERYRAEVSLA 479

Query: 433 SLGLGSGTTEKIWFSL-----KEKYGATQFIGYDLLRGS--------KFMKEDRKVLCQK 479
            L       E    SL     +++    Q +    L  +         F KE      Q 
Sbjct: 480 KLKAKGNQRETAGGSLCDLATEQRIAEAQAMLTKRLTPTDNSHKYTYSFDKESDSY--QI 537

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ--------TPFYAEAGGQLGDT 531
           PP+      + ++  ++   E+      G +++  F          + FY E+GGQ  D 
Sbjct: 538 PPLK-----TRVLGMLLNDAEVSR--TQGSRIQQPFTDLISIVTAGSNFYYESGGQQSDG 590

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHH---AIVERGILRTEM---------SLVLTIDYQN 579
           G  +      Q  D     + I V H    +V    L +            + L +D Q 
Sbjct: 591 GKILVSN--HQQPDHPHSLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQ 648

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDN 638
           R+  + +H+ATHLL+ A+ ++      Q  S ++ D  + ++    K I   +++ IED 
Sbjct: 649 RQLNTCHHTATHLLNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDL 708

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGG 696
           +N +I    PV  ++++  + +      ++ G  Y ++ +R+V+VE  +  + S  LC G
Sbjct: 709 INRVICSAAPVEVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCG 768

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           TH ++T E+    IV+            A+ GQ A + L
Sbjct: 769 THATNTSELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 807


>gi|307176881|gb|EFN66222.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 1005

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 234/807 (28%), Positives = 364/807 (45%), Gaps = 119/807 (14%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR  FL++F  +  H ++ SS + P  D +L F N+GM  FK IF    +P    V   Q
Sbjct: 22  IRKEFLDYFSNDLKHSIIRSSPVSPIADQSLAFINAGMNQFKGIFLDYHEPPAAKVVNSQ 81

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R GGKHNDL  VG  + HHTFFEMLGN+SFG YFKE A   AW+LLT  + + +  L
Sbjct: 82  KCIRVGGKHNDLSVVGNDSYHHTFFEMLGNWSFGDYFKEDACTYAWNLLTNIYGIPEECL 141

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  +E        E   +W ++ GL   K++     DNFW M  +GPCGPC+EI  
Sbjct: 142 YVTYFGGNEKLGMAPDLECKNIWLRL-GLPECKVLPFGMRDNFWEMGLSGPCGPCTEIHV 200

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D            ++     +E+WN+VF+Q+E+        L K  +DTGMG ER+ T L
Sbjct: 201 DFMRRNTNQAARVNKGYADLMELWNIVFIQYERLANGSIVPLSKHHVDTGMGFERLVTFL 260

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLRSSSFLIAD 288
           Q K +NYD DLF+ L  A ++ +          N         +R++ DH R  +  +AD
Sbjct: 261 QGKKSNYDTDLFQPLFDAIQKHSNAPNYKGTFDNDDTGKLDYGYRILADHTRMVTVALAD 320

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL------IQ 342
            +LP  + +   LRRI+R A+     + +   ++  L   +   + +AYPEL      +Q
Sbjct: 321 NMLPEEQKK---LRRILRNAINVGEKIFHKSGIVTELAYTVADNLDAAYPELHNNLKQVQ 377

Query: 343 AKLLIEETL------------------RSEDERFGKTLDRGLV----LLDGVLSHLGKDE 380
             +  EE L                  R E       +  GLV     L  +L  L K  
Sbjct: 378 RIIDFEEDLFKRLRNTSGKKWSKMIEIRPELASITDWMAPGLVDGYKELQSMLKELRKTN 437

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           IL+G VAFKLYDT+GL  + + ++     L   D I F + L+  R +++          
Sbjct: 438 ILSGTVAFKLYDTYGLNSETIAELAEIESLH-FDEIDFEKQLDNHRYQSK---------- 486

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN-------------- 486
                            IG D  + S   KE  ++L +K  +  TN              
Sbjct: 487 -----------------IGLD--KNSILTKESLEIL-EKDHVPKTNDSFKYNYTYNGNNY 526

Query: 487 ---GVSSIVKAIVQQGEIV-----------EEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
               ++S +  I+  GE+V           E   S  ++ ++ D+T  Y+  GGQ+ D G
Sbjct: 527 EFPALNSKLIGIIINGELVINKTRKTINVKEIYNSTDEIGIILDKTVCYSSEGGQVSDIG 586

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT-EMSL------VLTIDYQNRRQLSI 585
                 +   I +V  K  G  +H     +  L T E+ L      ++ I+   R     
Sbjct: 587 NISIKNLFFNIDNV-IKINGYVIHSGYFAKIDLPTSELYLQIGDDCLVNIEPNIRIGAMK 645

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIA 644
           +H+ATHLL+ AL  ++   V Q+ S +  D L+F   +  + +T  +++ IE  +N+II 
Sbjct: 646 HHTATHLLNAALKQVMQV-VYQSSSTVNADNLKFQFNSFGEQLTLDQMRIIEHCINNIIQ 704

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               +    +N  + +      L+  +      +  +E     + S   C GTHV +T  
Sbjct: 705 TRAAITVETLNLLELLKQDDITLIPGEIYPYTGIKVIEINANNLKSKETCCGTHVHNTSV 764

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA 731
           +     ++ +S     R ++AI GQ A
Sbjct: 765 LQHFCFLTYTSKGTTKRTVKAIVGQEA 791


>gi|227872330|ref|ZP_03990685.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
 gi|227841837|gb|EEJ52112.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
          Length = 359

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/318 (47%), Positives = 212/318 (66%), Gaps = 12/318 (3%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL +FQ+  H ++ S SL+P ND +L+  NSGM P K  FTGQE P  + V T
Sbjct: 41  VNELRKMFLAYFQEKEHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPKRRVAT 100

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  A+  AW+ LT+   L++ 
Sbjct: 101 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKSEALHFAWEFLTERVGLEKD 156

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y EDEEAFK+W +  G+ AD+I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 157 RLYPSIYLEDEEAFKVWNEEIGIPADRIYRFGKKDNFWEHG-VGPCGPCSEIYYDRGEKY 215

Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              P  + G   EG+R++E+WN+VF QF    K     L + +IDTGMGLER+A V Q+ 
Sbjct: 216 GTGPEDVMGG--EGDRFLEVWNVVFSQFNNDGKGNYTDLIQKNIDTGMGLERLAVVCQDV 273

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +D+D  + ++   E ++G KY  +    V+ R+I DH++S +F+ +DGI+P+NEGRG
Sbjct: 274 PSLFDVDTNQAMMTEIESLSGKKYLEDKTADVSFRIIADHVKSCTFMASDGIMPSNEGRG 333

Query: 299 YVLRRIMRRAMCYARLLG 316
           YV RR++RRA  + R+LG
Sbjct: 334 YVFRRLLRRAARHGRILG 351


>gi|198416598|ref|XP_002127690.1| PREDICTED: similar to LOC443692 protein [Ciona intestinalis]
          Length = 809

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/429 (38%), Positives = 257/429 (59%), Gaps = 34/429 (7%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-- 56
           + N SS  +R  F+ FF++  H+ +PSS +    DP+L+F N+GM  FK +  G++K   
Sbjct: 24  LHNYSSKELRDIFINFFERRDHKFIPSSKVYTPEDPSLLFVNAGMNQFKPVLLGEQKKKS 83

Query: 57  ----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112
               V +AV + QKC+RAGGKHNDL++VG    HHTFFEMLG++SFG YFKE A ++AW 
Sbjct: 84  LFTNVRRAVNS-QKCIRAGGKHNDLNDVGHDLTHHTFFEMLGSWSFGDYFKEDACKMAWL 142

Query: 113 LLTKEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLT+  +L   RLY+T ++         D +  ++WK I G++ ++I+   + DNFW M 
Sbjct: 143 LLTEVLNLSPDRLYVTYFNGCPLNNLKPDYDTREIWKSI-GVNHNRILPFGSTDNFWEMG 201

Query: 165 ETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPC+EI +D+     +P  +  S  +    +EIWN+VFMQF + +  +   L   
Sbjct: 202 ETGPCGPCTEIHYDRIGNRHVPEQVNKSLSD---VVEIWNIVFMQFNKVSISQLEPLNVC 258

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHR 273
            +D+GMGLER+  V+Q+K +NYD DLF  ++ A E+++ +  Y+G       N I   +R
Sbjct: 259 HVDSGMGLERITAVMQQKQSNYDTDLFVPILSAIEEISKVGPYKGRVGEEDTNGIDAAYR 318

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           +I DH+R  +  I+DGI P  +GR  +LR+++RRA+      L    P +  LLP +   
Sbjct: 319 MISDHIRMLTVAISDGIYPGPKGRELILRKVLRRAVLAGIEKLQTPRPFLYTLLPTVVES 378

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           +G A+PE+   +  + E ++  +  F +TLDRG +++   + +L  +E    +VA KL  
Sbjct: 379 LGCAFPEVELKQDEVMEVIKESEMAFYRTLDRGDLIVRKTIKNLAGNE-FPPEVAHKLRL 437

Query: 393 THGLPLDIM 401
            +G PL+ M
Sbjct: 438 QNGYPLNRM 446


>gi|241563387|ref|XP_002401683.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215501875|gb|EEC11369.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 207

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 132/199 (66%), Positives = 159/199 (79%), Gaps = 1/199 (0%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    T QK
Sbjct: 9   VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAATSQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L + +LY
Sbjct: 69  SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE I GG
Sbjct: 129 ATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188

Query: 187 LPGS-SEEGERYIEIWNLV 204
           LPG+  E+G+R+IEIWN+V
Sbjct: 189 LPGTKDEDGDRFIEIWNMV 207


>gi|302339632|ref|YP_003804838.1| alanyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636817|gb|ADK82244.1| alanyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 597

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 259/450 (57%), Gaps = 36/450 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   +R  ++EFF   GH  +   SLIP NDPT++FT +GM P      G+  P    +T
Sbjct: 2   NSDELRNKYIEFFVSKGHARITGQSLIPENDPTVLFTTAGMHPLVPYLLGEPHPAGTRLT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QKC+R G    D+D VG  + H TFFEMLGN+S G YFKE AI ++++ LT  K   +
Sbjct: 62  DYQKCIRTG----DIDAVGDPH-HLTFFEMLGNWSLGDYFKEDAISMSFEFLTSPKWLGI 116

Query: 121 DQRRLYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCS 173
              +L +T +   DE   DEE+  +WK++ G+  D+I  +   DN+W  A ETGPCGP +
Sbjct: 117 PVEKLSVTCFAGDDEVPRDEESASVWKRM-GIPEDRIFFLGRGDNWWGPAGETGPCGPDT 175

Query: 174 EIFFDQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           E+F D G      +C PG   G      +Y E+WN VFMQ+ +Q       L +  +DTG
Sbjct: 176 EMFIDTGRDACGDDCRPGCPCG------KYFEVWNDVFMQYNKQADGSFVPLERTCVDTG 229

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSF 284
           MG+ER   VLQ K + Y+ + F  LI   E+++G +Y   EG++  + R+I DH+R++ F
Sbjct: 230 MGIERTVAVLQGKRSVYETEAFTPLISGIERLSGKQYGKDEGDD-TSIRIIADHVRTAVF 288

Query: 285 LIAD--GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           ++ D  G+ P+N G+GY+LRR++RRA+ +   LG     +  L   +    G  YPELI 
Sbjct: 289 ILGDERGVKPSNLGQGYILRRLIRRAVRHGLKLGIDRAFLSELADIVFERYGLPYPELIA 348

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDI 400
           AK  + E L +E+ RF +TL +G    + +L +L K +  ++ G VAF+LYDT+G PL+I
Sbjct: 349 AKDFVREELTAEEARFSETLKKGEHEFEKLLPNLKKSKSGVIPGRVAFRLYDTYGFPLEI 408

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRAR 430
            +++     L  +D   F ++ E+ +  ++
Sbjct: 409 TEELAAEHDLT-VDREGFEKSFEKHQELSK 437



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 5/144 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  H + ++  E++ +E+ VN  I ++
Sbjct: 459 HTATHLLHKALRMVLGEHVQQKGSNITTERLRFDFVHPEKMSDEEVRRVEEIVNQQIDRD 518

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M+ ++A A+GA A   +KY ++V+V S+     G  S  +CGG HV  TG++ 
Sbjct: 519 LPVSMEMMSLDEARAAGALAFFESKYGEQVKVYSI-----GDFSKEVCGGPHVEHTGQLG 573

Query: 707 LLYIVSESSIRAGIRRIEAITGQR 730
              I  E S  AG+RRI A+   R
Sbjct: 574 RFKITKEQSSSAGVRRIRAVLEDR 597


>gi|307069566|ref|YP_003878043.1| putative alanyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482826|gb|ADM89697.1| putative alanyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 426

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/432 (37%), Positives = 250/432 (57%), Gaps = 28/432 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL F++K  H ++P  +L   N+  LMF NSGM+ FK  F G+ K  Y+ +  VQ 
Sbjct: 6   VRNKFLNFYKKKKHIIMPHINL-KLNENKLMFVNSGMIQFKKFFLGR-KSKYKRICNVQP 63

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C R  GKHND + +G TN HHT FEMLGN+SF  YFK  A+   W+LL  +F +++++++
Sbjct: 64  CFRVSGKHNDFEKIGYTNIHHTLFEMLGNWSFRNYFKYDALFWTWELLINKFKINEKKIW 123

Query: 127 ITVYDEDEEAFKLWKKISGLS-------ADKIIRITTNDNFWSMA-ETGPCGPCSEIFFD 178
           IT+++ D E + +W+KI G+S        +   +   N+NFW ++   GPCG CSEIF+D
Sbjct: 124 ITIHENDFETYNIWRKI-GISNKRIIKKKNIKKKFFLNENFWEISNNNGPCGTCSEIFYD 182

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS---IDTGMGLERMAT 235
            G+           + +RY+EI N VF+Q++++    ++IL K+    ID G+GLER+ +
Sbjct: 183 MGK-------KYKLKNQRYVEICNNVFLQYKKKLYNNKYILNKLKYNYIDVGIGLERLTS 235

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ   +NY IDLFK +I        +K    NI + ++I DH+RS+ FLI++ I P+N 
Sbjct: 236 ILQNVNSNYKIDLFKKIINKISDKIKIK----NINSLKIISDHIRSACFLISEKIYPSNN 291

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+LR+I+RRA+          P    +   L  EM   YP L + K  I+  ++ E+
Sbjct: 292 KHGYILRKIIRRAIREGYKSNIKNPFFYKISSILIKEMEDFYPFLKKNKNNIKNVIKKEE 351

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E+F      G+ +L+  L    K   L+G  AFKLYDT+G P+++++DI C +    I  
Sbjct: 352 EKFFNIYKIGIRILNNELKKCSKK--LDGKFAFKLYDTYGFPIELLEDI-CLKNKILIKK 408

Query: 416 ISFNQALEEQRS 427
             F   + +Q++
Sbjct: 409 KEFFYEMNKQKN 420


>gi|70946295|ref|XP_742877.1| alanine--tRNA ligase [Plasmodium chabaudi chabaudi]
 gi|56522097|emb|CAH77105.1| alanine--tRNA ligase, putative [Plasmodium chabaudi chabaudi]
          Length = 917

 Score =  294 bits (752), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 212/733 (28%), Positives = 360/733 (49%), Gaps = 110/733 (15%)

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSA 148
           FG YFKE +I+ AWDLLT  + ++  RLY+T +  D+         EA K+W K   L  
Sbjct: 1   FGDYFKEESIEYAWDLLTNVYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDE 58

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVF 205
            +I+     DNFW MAETGPCGPCSEI +D+     G    S   +++    +EIWN+VF
Sbjct: 59  KRILPFGMKDNFWEMAETGPCGPCSEIHYDR----IGNRDASDLVNKDDPSVLEIWNIVF 114

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG--MK 263
           MQ+ +  K+    LP   IDTGMGLER+ ++LQ   +NYD DLF  + +  +++      
Sbjct: 115 MQYNKDEKKNMNKLPSPCIDTGMGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDIPN 174

Query: 264 YEGNNIVN----------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
           Y+G   +N          +RVI DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   +
Sbjct: 175 YQGK--INEEDPDKIDYAYRVISDHIRCATIAISDGCIPSNEGRNYVIRRIIRRAVRVGK 232

Query: 314 LLGYTEPLMM---HLLPALCTEMGSAYPELIQAKLL--IEETLRSEDERFGKTLDRGLVL 368
            +   +  ++    L+ ++C  +G+ + +L   + +  I+  +  E+  F KTL++G+  
Sbjct: 233 QVFNIKSNVLWFYKLVDSVCKILGNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQ 292

Query: 369 LDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            + ++          + + +G  AF LY ++G P+D+++ I+C      +++  FN   +
Sbjct: 293 FNKIIKKCHQKQNNSNNLFSGKDAFDLYTSYGFPIDLIE-IMCEEKNVKLNMEEFNTLFK 351

Query: 424 EQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGY------DLLRGSKFMKEDRK 474
           + +  +  ++  +        EK    +K KY     I +      +     K  +E++ 
Sbjct: 352 KHQLVSDTNNFKINKIIDLPVEKA-HEIKCKYNVLPTIDHHKYNWNNTFEIPKSKEENKD 410

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE-------VVFDQTPFYAEAGGQ 527
            L  K  + +     + +  IV   +  +E+ SG+K+E       ++  +T FY E GGQ
Sbjct: 411 NLRLKSSVQIIYD-GNFLDEIVHTDDDAKESSSGEKIENKQKKYALILKETNFYYENGGQ 469

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + DTG    + ++ Q+ +VQK  + I +H  ++  G ++   ++   +D++ R+ ++ NH
Sbjct: 470 IYDTGYIQNESMKFQVLNVQKMNDYI-LHIGVLLNGHIKKNDAIETVVDFERRKLIACNH 528

Query: 588 SATHLLHHALSTILGSHVS------------------------------------QNGSC 611
           +ATHLL+ AL  +L   V+                                    Q GS 
Sbjct: 529 TATHLLNFALRKVLTDQVNQKKNKCDNNGEKKESSLEDSSETRNKLEGSSIFNCDQKGSL 588

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGT 670
           +  + LRFD +  + I    L  +E  +N+I+ + L V  + M+  E     G  A+   
Sbjct: 589 VDDEKLRFDFSFIENINMDVLNKLETEINNIVKEELNVSVKTMDLNESKKIKGIRAIFEE 648

Query: 671 KYNDRVRVVSVEYEDGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            Y D+V VV +      V ++            LCGGTH+ +T  I    I SE SI  G
Sbjct: 649 DYADKVNVVFISKNADDVLNNLDINYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKG 708

Query: 720 IRRIEAITGQRAR 732
           I RI A+T ++A 
Sbjct: 709 IHRINAVTNKKAE 721


>gi|307128669|ref|YP_003880699.1| alanyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483131|gb|ADM90001.1| alanyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 446

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/447 (36%), Positives = 261/447 (58%), Gaps = 24/447 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N  +I   FL FF+K  H+++ S+SL+  NDPTLMFTN+GM  FKN F   + P +  +T
Sbjct: 2   NYKNIIKNFLYFFKKKNHKIIYSASLLAKNDPTLMFTNAGMNRFKNYFICYKHPKFLRIT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            +QKC+R  GKHNDL +VG+   HHT FEMLGN+SFG YFK++AI+ AW+LLTK + + +
Sbjct: 62  NIQKCLRITGKHNDLYDVGKDKYHHTMFEMLGNWSFGDYFKKKAIKWAWELLTKIYKIKK 121

Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
             +Y+T++  D+        E++K WKK   +  +KII     +NFW M ETGPCG  SE
Sbjct: 122 DNIYVTIFSGDKKKNLPFDRESYKFWKK--RIYENKIIFFDKKNNFWEMGETGPCGYSSE 179

Query: 175 IFFD-QGECIPGGLPGSSEEGERY---IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           I  D + E     + G     + +   IE+WNLVF+++ ++       LP+  +DTGMG+
Sbjct: 180 IHIDIRNEKEKNKISGKKLINKGHPLVIELWNLVFIEYFREKNGNLEKLPQSHVDTGMGI 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLI 286
           ER+  +LQ+K + YD D+F  LI+  E +TG+ Y       H    RV+ DH+R+  F I
Sbjct: 240 ERLCMILQKKKSTYDTDIFNILIKKIENITGIVY--GKFYKHDIAIRVLADHIRAIVFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG++P+N+  GY++++++RR + Y  +    +   ++ L        + +   I  K  
Sbjct: 298 KDGVIPSNKKSGYIIKKLLRRTIIYYYIFLKKKKKFLYKLVKCVLLQKNKFNYKINNKEK 357

Query: 347 IEETLRSEDER-FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
           I + +  ++E  F KT+ +    +  ++  L K+  + +NG + FKLYDT+GLP ++   
Sbjct: 358 IIKYIIKKEEILFFKTISKVTFKIKKIIFLLKKEGKKRINGKIIFKLYDTYGLPFELANF 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR 430
           I     +  ID  SF + + +Q+ R++
Sbjct: 418 IAIKNNMI-IDQFSFEKEMLKQKLRSK 443


>gi|300705740|ref|XP_002995226.1| hypothetical protein NCER_101964 [Nosema ceranae BRL01]
 gi|239604171|gb|EEQ81555.1| hypothetical protein NCER_101964 [Nosema ceranae BRL01]
          Length = 337

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 145/318 (45%), Positives = 208/318 (65%), Gaps = 19/318 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V  ++  F  +F+  GHE++ SSS+IP NDP+L+FTNSGMV FKNI  GQE  + +A + 
Sbjct: 6   VKKLKRAFFSYFKSKGHEIIKSSSVIPSNDPSLLFTNSGMVQFKNILMGQETNLKRACS- 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           +Q+C+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+ AI+ AWD L     L+Q 
Sbjct: 65  IQRCIRAGGKHNDLDDVGKDTYHHTFFEMMGNWSFGDYFKKEAIEYAWDFLVNILKLEQD 124

Query: 124 RLYITVY-DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           RLY+T Y D D E++ +WK+   L +++II    NDNFW M +TGPCGPC+EI +D+   
Sbjct: 125 RLYVTYYKDMDSESYNIWKEF--LPSERIIEADKNDNFWEMGDTGPCGPCTEIHYDR--- 179

Query: 183 IPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILP--KMSIDTGMGLERMATVL 237
             GG   S   +++    IEIWN+VF+++   N+    + P  +  IDTG+G ER+ ++L
Sbjct: 180 -IGGRDASRLVNQDDPDVIEIWNIVFIEY---NRTPTGLEPLERKCIDTGIGFERLLSIL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPAN 294
               +NY  + F  +I+  E +T  KYE    +     R + DH R+ +  + D +  +N
Sbjct: 236 NNVKSNYLTNCFIPIIKNIENMTDKKYEDKLTIEDTAFRAVSDHCRTIAVCLIDNVEFSN 295

Query: 295 EGRGYVLRRIMRRAMCYA 312
           EG+GYVLRRI+RRA+ YA
Sbjct: 296 EGQGYVLRRILRRAVRYA 313


>gi|312211276|emb|CBX91361.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 925

 Score =  290 bits (742), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 216/682 (31%), Positives = 330/682 (48%), Gaps = 93/682 (13%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD--------EDEEA 136
           RHH+F     + SFG YFK+ AI  AW+LLT+ F LD  R+Y+T ++         D+EA
Sbjct: 21  RHHSFVPP-SSASFGDYFKKEAIGYAWELLTEVFGLDPNRIYVTYFEGYAPSGLGPDDEA 79

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEE 193
             L ++I G++ D I+     D+F  M + GPCGPC E+ ++    + GG   +   +++
Sbjct: 80  KDLLREI-GVADDHIVAGNIKDDFREMGDQGPCGPCIELHYE----LIGGRNATHLVNQD 134

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLI 253
           G   IEIW  VF+Q+ ++  +   + P   IDTG+G ER+ +VLQ KT+NYD DLF  L 
Sbjct: 135 GPDVIEIWIDVFVQYNREADKSLRLPPSKHIDTGLGFERLLSVLQNKTSNYDTDLFTPLF 194

Query: 254 QASEQVTGM-KYEGNNIVN--------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
              ++V G   Y G   +         +R + DH+R+S F I+DG++P N GRGY++RR 
Sbjct: 195 DKIQEVIGACSYRGRFGIEDTDGIDTAYRAVADHVRTSVFAISDGVIPNNVGRGYIVRRT 254

Query: 305 MRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           +RR   Y R     E       ++P +   MG  +PE+ + +   +E +      F K  
Sbjct: 255 VRRGAGYGRKYLNAELGSFFSKIVPTVIEHMGDTFPEIRRKETEFKEAM------FNK-- 306

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
                 +    S   K   L+G   ++LYD +G P+D+ + I   +GL   D        
Sbjct: 307 -----YVQACQSEGSK--YLHGAYVWRLYDIYGFPIDLTKLIAEEQGLHIKDEEVSAAQR 359

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            E++  ++     L S    KI  S +   G TQ  G+ L          ++ +CQK   
Sbjct: 360 GEKKVNSQTTVHDLASIALRKI--SKRSDTGDTQ--GHLL----------QQKVCQKHL- 404

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RL 541
                                E   G++  V+  +T FYA++GGQ  DTG  + D +  L
Sbjct: 405 ---------------------EVPQGEEFGVLLHKTNFYAKSGGQQFDTGRLVIDNLAEL 443

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + +VQ   +G  +H   ++ G L     L+   D   R+ + +NH+ TH+L+ AL  +L
Sbjct: 444 DVRNVQ-SYKGYVLHTGFLKYGSLAVGDELLAEYDESRRQPIRMNHTGTHILNFALREVL 502

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-I 660
           G  V Q+GS + P+ LRFD +H   +   EL+ IE+  +  I     +    +N   A  
Sbjct: 503 GKEVEQHGSLLAPEKLRFDFSHKTGVIDEELERIEEISDKYIKDGKLLFASDVNLSTARR 562

Query: 661 ASGAAALLGTKYNDRVRVVS-----------VEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             G  A+LG    D VRVVS           V  +    +S   CGGTHV  T E+  L 
Sbjct: 563 KQGVRAVLGETCLDPVRVVSIGMPVENLVSDVASKGWWKYSIEFCGGTHVERTSEVQELT 622

Query: 710 IVSESSIRAGIRRIEAITGQRA 731
           ++ E  I  GIRRI A+TGQ A
Sbjct: 623 VLEEYGIAKGIRRIVAVTGQDA 644


>gi|316968240|gb|EFV52543.1| alanine--tRNA ligase [Trichinella spiralis]
          Length = 562

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/458 (36%), Positives = 254/458 (55%), Gaps = 58/458 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60
           N   +R TF+++F+K  H ++ SSS+I      ++FT++G+V F++I +    PV     
Sbjct: 108 NSRKVRQTFVDYFKKWDHVVVESSSMIAPKQSGMLFTSAGVVQFRSIISNINGPVQTQFR 167

Query: 61  -------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAI-QLAWD 112
                    + QKC R     NDL++VG+   HHTFFEMLGN+SF G   ++A+    W 
Sbjct: 168 PRDHLGLAVSFQKCARV----NDLNSVGKDRTHHTFFEMLGNWSFNGTMSKQAVCNHVWQ 223

Query: 113 LLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLTK + +D++RL++T +        D DEE  ++W  + G+   +++     +NFWS+ 
Sbjct: 224 LLTKIYSIDEQRLHVTYFGGDQQLGLDADEECKRIWLDVVGVQQCRLLTGNAEENFWSIG 283

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI       +P G            E+WN+VFM++ +        LP   +
Sbjct: 284 ETGPCGPCTEIHVQ----LPDGTLS---------ELWNVVFMEYYKHEDGSLRKLPATHV 330

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVN--------HRVI 275
           DTGMGLER+  VLQ + + Y  DLFK LI + +Q+TG   YEG   V+         R+I
Sbjct: 331 DTGMGLERLCAVLQNEDSAYGTDLFKPLIDSCQQLTGSPPYEGRFGVDDVTGLDSSFRII 390

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM-- 333
           VDH R  +F IADG+ P ++  G+VLR+I+RRA+ +  LLG   P    + P LC+ +  
Sbjct: 391 VDHARMCTFAIADGLKPGHQEAGHVLRKIIRRALYHVSLLGEPRP---GVFPKLCSAVVD 447

Query: 334 --GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391
                YP+L  ++LLI + L  E++RF  TL +     D +       E ++    F  Y
Sbjct: 448 LYADTYPQLQSSRLLINQVLLEEEKRFSTTLTKAKARFDRM------QEPIDSKAMFLFY 501

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           +T+GLP++++Q++   RGL   D+  F Q L+EQR R+
Sbjct: 502 NTYGLPMEMVQNLAERRGLP-FDLHQFEQQLQEQRRRS 538


>gi|42527166|ref|NP_972264.1| alanyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|48428513|sp|P61708|SYA_TREDE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41817590|gb|AAS12175.1| alanyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 600

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/452 (36%), Positives = 264/452 (58%), Gaps = 34/452 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            +  +R+ +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TIDELRSKYIDFFKSKGHVEISGRSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
            VQKCVR G    D+D+VG  + H TFFEMLGN+S G YFK+ +I  +++ LT E    +
Sbjct: 66  DVQKCVRTG----DIDDVGDAS-HLTFFEMLGNWSLGDYFKKESIAYSFEFLTDEKYLGI 120

Query: 121 DQRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCS 173
              +L  TV++       DEE+  +W+ + G+S D+I  +   DN+W  A ETGPCGP +
Sbjct: 121 PIDKLSFTVFEGNEDAPRDEESASIWESL-GVSKDRIFFLPKEDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGE------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           EIF D G+      C PG   G      +Y+EIWN VFMQ+ +        L +  +DTG
Sbjct: 180 EIFIDTGKPACGSNCRPGCNCG------KYVEIWNNVFMQYHKNMDGSYSPLKRKCVDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFL 285
           MG+ER   +LQ K + Y+ + F  +I++ E ++G+KY  N   +   R+I DH+R++ F+
Sbjct: 234 MGVERTVAMLQGKPSVYNTEAFTSIIKSIEDISGVKYGDNEKTDTSIRIIADHVRTACFI 293

Query: 286 IADG--ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           + D    LP+N G GYVLRR++RRA+ + + LG     +     A+  +    Y EL + 
Sbjct: 294 LGDPKTTLPSNIGAGYVLRRLIRRAVRHGKKLGIDGNFLSVPASAVIAQNAGFYTELKEN 353

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIM 401
           + LI   L++E+++F +TL +G    + +L +L K+  +I+ G +AFKLYDT+G P+++ 
Sbjct: 354 ETLILTELKAEEDKFLETLKKGEAEFEKMLPNLLKNPKKIIPGRMAFKLYDTYGFPIELT 413

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           +++    GL  ++   F++A ++ +  +RA S
Sbjct: 414 EELASESGLT-VNREEFDEAFKKHQELSRAGS 444



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 86/145 (59%), Gaps = 5/145 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H +P+T AE K +E  VN+
Sbjct: 458 QTTAYHTATHLLHKALRMVLGDHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNE 517

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   +M  E+A   GA AL G KY D V+V  +     G  S+ +CGG HV  
Sbjct: 518 AIKADLPVTMEVMPLEEAKKIGAMALFGEKYEDVVKVYKI-----GDFSTEVCGGPHVER 572

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAI 726
           TG +    I  E S  +G+RRI A+
Sbjct: 573 TGSLGRFCIKKEQSSSSGVRRIRAV 597


>gi|325474209|gb|EGC77397.1| alanyl-tRNA synthetase [Treponema denticola F0402]
          Length = 600

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/451 (36%), Positives = 264/451 (58%), Gaps = 34/451 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R+ +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T 
Sbjct: 7   IDELRSKYIDFFKSKGHVEISGRSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLTD 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKCVR G    D+D+VG  + H TFFEMLGN+S G YFK+ +I  +++ LT E    + 
Sbjct: 67  VQKCVRTG----DIDDVGDAS-HLTFFEMLGNWSLGDYFKKESIAYSFEFLTDEKYLGIP 121

Query: 122 QRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSE 174
             +L  TV++       D+E+  +W+ + G+S D+I  +   DN+W  A ETGPCGP +E
Sbjct: 122 IDKLSFTVFEGNKDAPRDDESASIWESL-GVSKDRIFFLPKEDNWWGPAGETGPCGPDTE 180

Query: 175 IFFDQGE------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           IF D G+      C PG   G      +Y+EIWN VFMQ+ +        L +  +DTGM
Sbjct: 181 IFIDTGKPACGSNCRPGCNCG------KYVEIWNNVFMQYHKNMDGSYSPLKRKCVDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLI 286
           G+ER   +LQ K + Y+ + F  +I++ E ++G+KY  N   +   R+I DH+R++ F++
Sbjct: 235 GVERTVAMLQGKPSVYNTEAFTSIIKSIEDISGVKYGDNEKTDTSIRIIADHVRTACFIL 294

Query: 287 ADG--ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            D    LP+N G GYVLRR++RRA+ + + LG     +     A+  +    Y EL + +
Sbjct: 295 GDPKTTLPSNIGAGYVLRRLIRRAVRHGKKLGIDGNFLSVPASAVIAQNAGFYTELKENE 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
            LI   L++E+++F +TL +G    + +L +L K+  +I+ G +AFKLYDT+G P+++ +
Sbjct: 355 TLILTELKAEEDKFLETLKKGEAEFEKMLPNLLKNPKKIIPGRMAFKLYDTYGFPIELTE 414

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHS 433
           ++    GL  ++   F++A ++ +  +RA S
Sbjct: 415 ELASESGLT-VNREEFDEAFKKHQELSRAGS 444



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 86/145 (59%), Gaps = 5/145 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H +P+T AE K +E  VN+
Sbjct: 458 QTTAYHTATHLLHKALRMVLGDHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNE 517

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   +M  E+A   GA AL G KY D V+V  +     G  S+ +CGG HV  
Sbjct: 518 AIKADLPVTMEVMPLEEAKKIGAMALFGEKYEDVVKVYKI-----GDFSTEVCGGPHVER 572

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAI 726
           TG +    I  E S  +G+RRI A+
Sbjct: 573 TGSLGRFCIKKEQSSSSGVRRIRAV 597


>gi|71902035|ref|ZP_00684078.1| Alanine--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71728198|gb|EAO30386.1| Alanine--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 528

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 303/558 (54%), Gaps = 40/558 (7%)

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +  TL +E+ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI  
Sbjct: 2   VMRTLLAEEERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIAR 60

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG+  +D+  F  A+ +QR  ARA     G G   ++          T F+GY+ L+  
Sbjct: 61  ERGMR-VDMAGFEAAMTQQRKTARAAG-KFGRGV--QLSAERAAMLSPTVFLGYEQLQAD 116

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V A++  G + + A  G +V V+ D+TPFYAE+GG
Sbjct: 117 GLR----------------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGG 154

Query: 527 QLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GD G  +  DG+RL++TD QK       H A + +G ++    L  ++    R+ +++
Sbjct: 155 QVGDIGTLMASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVAL 214

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL ++ G+HV+Q GS + PD LRFD +H +PI++ ++  IE  VND +  
Sbjct: 215 NHSATHLLHCALRSVFGNHVAQKGSLVAPDRLRFDFSHFEPISAVQMTLIERMVNDEVRA 274

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N  V+   M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I
Sbjct: 275 NHLVMIEQMGMQAALDAGAMALFGEKYGEHVRVVTMGT------SVELCGGTHITRTGDI 328

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I+SE  + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +
Sbjct: 329 GLFKIISECGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTD 388

Query: 766 EYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             + L+    K K +L    + DL      +ADV  ++  +  +D K L+  +D L+ ++
Sbjct: 389 RQKTLERELEKLKGKLLSGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQL 448

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              +I+L G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG 
Sbjct: 449 SDAVIVLAGVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGE 507

Query: 881 NGNKADQAIAGVASFLKK 898
           +G     A+  VA+++K+
Sbjct: 508 DGPSLRSALDSVATWVKQ 525


>gi|257456350|ref|ZP_05621547.1| alanyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446436|gb|EEV21482.1| alanyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 600

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 259/452 (57%), Gaps = 34/452 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ ++ FF+   H  +   S+IP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TADELRSKYIAFFKSKNHTEISGKSVIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QKC+R G    D+D VG  + H TFFEMLGN+S G YFK+ AI  +++ LT  +  D+
Sbjct: 66  DYQKCIRTG----DIDAVGDAS-HLTFFEMLGNWSLGDYFKKEAIGYSFEFLTSPQYLDI 120

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCS 173
               L +TV+        D E+ ++W+K+ G+  ++I  +   DN+W  A ETGPCGP +
Sbjct: 121 PIDLLSVTVFAGDDKVPRDTESAEIWEKL-GIPKERIHFLPREDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           E+F D G      EC PG   G      +Y+EIWN VFMQ+ ++       L +  +DTG
Sbjct: 180 EMFIDTGKPACGHECRPGCSCG------KYVEIWNDVFMQYRKEQDGSYHTLERHCVDTG 233

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFL 285
           MG+ER   +LQ K + Y+ ++F  LI A E++TG +Y  +    V+ R+I DH+R+++ +
Sbjct: 234 MGIERTVAMLQGKKSVYETEIFTPLIAAIEKITGYQYGSDAEKDVSVRIICDHIRAATVI 293

Query: 286 IAD--GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           + D   ++P+N G GYVLRRI+RRA+ + R LG     +      +  +   AYPEL   
Sbjct: 294 LGDPKAVVPSNVGAGYVLRRIIRRAVRHGRKLGIEGTFLAIPAKVVIEQYKGAYPELKDK 353

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIM 401
           ++ I   L +E++RF +TL +G    + +  +L K+  +I+ G +AFKLYDT+G P+++ 
Sbjct: 354 EVTITAELEAEEKRFLETLKKGEAEYEKMKPNLLKNPKKIIPGRLAFKLYDTYGFPIELT 413

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           +++    GL  +D   F +A ++ +  +RA S
Sbjct: 414 EELARESGLT-VDRAEFEEAFKKHQELSRAGS 444



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 86/145 (59%), Gaps = 5/145 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H +P+T+ E   +E  VN+
Sbjct: 458 QTTAYHTATHLLHKALRMVLGDHVEQKGSNITAERLRFDFSHPQPMTAEEKAEVERIVNE 517

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   IM  E+A  +GA AL G KY D V+V S+     G  S  +CGG HV  
Sbjct: 518 QIQADLPVTMEIMPLEEAKRAGAMALFGEKYEDTVKVYSI-----GNFSKEVCGGPHVEH 572

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAI 726
           TG +    I  E S  AGIRRI A+
Sbjct: 573 TGVLGKFSIQKEQSSSAGIRRIRAV 597


>gi|225629867|ref|ZP_03787773.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591275|gb|EEH12409.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 212

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 162/212 (76%), Gaps = 10/212 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +   +
Sbjct: 3   LNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD+ 
Sbjct: 63  SQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKN 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G   
Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHGS-- 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
                 + +EG+R +EIWNLVFM+F   NK E
Sbjct: 181 -----PNLQEGDRIVEIWNLVFMEF---NKDE 204


>gi|281208014|gb|EFA82192.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 804

 Score =  284 bits (726), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 175/249 (70%), Gaps = 12/249 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ SIR TFL +F++N H  + SSSL+P  D +L+FTNSGMV FKN F G EKPV    T
Sbjct: 51  SIDSIRKTFLSYFERNDHLRVESSSLVPHTDYSLLFTNSGMVQFKNCFIGFEKPVKPLCT 110

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDL 120
           +VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY  FK  AI+ AW LLT +F L
Sbjct: 111 SVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYSHFKRDAIRHAWTLLTVDFKL 170

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQ 179
              RL +TV   DEE+  +W+   GL +++I+     DNFWSM +  GPCGPCSEIF+DQ
Sbjct: 171 PVDRLLVTVLHGDEESASIWRDDIGLPSERILYKGEADNFWSMGDGDGPCGPCSEIFWDQ 230

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G  +         +G+RY+EIWNLVFMQ+ +   ++   L    +DTGMGLERMATVLQ 
Sbjct: 231 GHEV---------DGDRYLEIWNLVFMQYHRDASRKLIPLATPCVDTGMGLERMATVLQG 281

Query: 240 KTNNYDIDL 248
            ++NY+ID 
Sbjct: 282 VSSNYEIDF 290



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 248/548 (45%), Gaps = 69/548 (12%)

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++RG   LD ++     DE       F +++T+GLPL+I  ++   +    + +      
Sbjct: 292 IERGAPHLDDLIESRKLDEWQ----VFNIFNTYGLPLEI-SEVKAKQANIELSMEKVQTY 346

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQKP 480
           +EE + ++++      +   E +    K      +FIGY D    SK +K         P
Sbjct: 347 IEEMKEKSKSTWKKDKNNIPEPV-LKWKNDRIEPEFIGYTDTKSKSKVLKS-----YFNP 400

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGI 539
             D    +S                          D+ PFY  +GGQ+GDTG  IG  G 
Sbjct: 401 EQDSVAYLS-------------------------LDKCPFYGNSGGQIGDTGKIIGKSGN 435

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVL--------TIDYQNRRQLSINHSAT 590
             ++ D  K  E   V    ++  I R  ++S+ L         +D+  R+Q +I+H+AT
Sbjct: 436 TYRVIDCIKPYENGLVILLEIDPKIHRYNDLSIDLKEDSFVDSVVDHNIRQQTAIHHTAT 495

Query: 591 HLLHHALSTILGSHVSQN-----GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HLL  AL  +L S+ S +     GS + PD LRFD T+   +T  E++ +E  +N II +
Sbjct: 496 HLLQAALRAVLKSNQSSSSVVQAGSYVGPDALRFDFTYPAKLTREEIQQVEHWINHIIEK 555

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T      +A  S A  L   KY D VRVV V        S  LCGGTHV  T E+
Sbjct: 556 DAIVETVETPYAEACKSDAIQLFSEKYRDVVRVVDVP-----GFSKELCGGTHVKRTSEL 610

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SE+S+ AG RRIEAI G  A   L    + L S++  L+V    V  +++++  
Sbjct: 611 QCFKIISENSVAAGTRRIEAIAGPVAIKWLSNNSDILSSISRRLEVQTPAVEKQIDQLLT 670

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIIS---EVDSKELKSVMDALQKKI 820
             ++ +   A   ++L +  +   K        + H+I     VD K L+ + +++ K+ 
Sbjct: 671 NRKEQERQIADLTMKLALASIKSAKGSFDGKPIIIHLIDCDVSVDKKGLQEIGNSMSKRD 730

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              + +++ +       +L+ +    LD  +A  + +   +V+G G GGG   MAQ+   
Sbjct: 731 TDSVHVIITLD----GKILVTLGSAKLDT-SADKVIKTLFQVIGAGKGGGSKQMAQAS-- 783

Query: 881 NGNKADQA 888
            GN  D++
Sbjct: 784 IGNNIDKS 791


>gi|320536417|ref|ZP_08036454.1| alanyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320146727|gb|EFW38306.1| alanyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 600

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 162/448 (36%), Positives = 262/448 (58%), Gaps = 34/448 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T  QK
Sbjct: 10  LRRKYIDFFKSKGHVEISGKSLIPDNDPTVLFTTAGMHPLVPYLMGEPHPSGTRLTNYQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+D VG    H TFFEMLGN+S G YFK+ AI+ +++ LT  K   +    
Sbjct: 70  CIRTG----DIDEVGDAA-HLTFFEMLGNWSLGDYFKKEAIEYSFEFLTDKKYLGIPIDL 124

Query: 125 LYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177
           L +TV+  DE      E+ + W+++ G+S ++I  +   DN+W  A ETGPCGP +E+F 
Sbjct: 125 LSVTVFAGDEQVPKDTESAETWQRL-GISKERIYFLPRKDNWWGPAGETGPCGPDTEMFI 183

Query: 178 DQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           D G      +C PG   G      +YIEIWN VFMQ+ +        L +  +DTGMG+E
Sbjct: 184 DTGKDACGADCKPGCHCG------KYIEIWNDVFMQYHKNKDGSYSELTRHCVDTGMGIE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD- 288
           R   +LQ K + Y+ ++F  LIQ  E+++G  Y  N  + ++ R+I DH+R+++F+++D 
Sbjct: 238 RTVAMLQGKKSVYETEIFTPLIQTVERLSGKTYGQNEADAISIRIICDHVRAATFILSDP 297

Query: 289 -GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
             + P+N G GYVLRRI+R A+ + + LG     +      +  +   AYPEL + +  I
Sbjct: 298 KSVAPSNVGAGYVLRRIIRSAVRHGKKLGIEGCFLSTPAKVVIGQYNGAYPELQEKETEI 357

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
             +L +E+++F +TL +G    + +L +L K+  +I+ G +AFKLYDT+G P+++ +++ 
Sbjct: 358 YASLEAEEKKFLETLKKGETEYEKMLPNLLKNPKKIIPGRLAFKLYDTYGFPIELTEELA 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHS 433
              GL  ++   F++A ++ +  +RA S
Sbjct: 418 RESGLQ-VNREEFDEAFKKHQELSRAGS 444



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 5/144 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H KP+T  E   +E  VN+
Sbjct: 458 QTTAYHTATHLLHKALRMVLGDHVEQKGSNITAERLRFDFSHPKPMTPEEKAEVERIVNE 517

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   +M+ ++A  SGA AL G KY D V+V S+     G  S  +CGG HV  
Sbjct: 518 QIQADLPVSFEVMSLDEAKKSGAMALFGEKYEDSVKVYSI-----GSFSKEVCGGPHVEH 572

Query: 702 TGEIMLLYIVSESSIRAGIRRIEA 725
           TG++    I  E S  AG+RRI A
Sbjct: 573 TGQLGHFVIKKEQSSSAGVRRIRA 596


>gi|195167795|ref|XP_002024718.1| GL22619 [Drosophila persimilis]
 gi|194108123|gb|EDW30166.1| GL22619 [Drosophila persimilis]
          Length = 1012

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 228/818 (27%), Positives = 371/818 (45%), Gaps = 118/818 (14%)

Query: 7   IRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TF++FF  N  H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFIDFFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A+  A +LL   +++D  RL
Sbjct: 77  KCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKRPAL-WALELLRGPYNIDPGRL 135

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGPC+EI  
Sbjct: 136 YVTYFAGDKLLGIPADMECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGPCTEIHI 194

Query: 178 ----------DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
                     D+G+ +  G            E+WNLVF+Q+ +        LP   +DTG
Sbjct: 195 DHRPELGSVADRGKLVNAG-------RSDLTELWNLVFIQYNRNPDGSISQLPAHHVDTG 247

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVD 277
           MG ER+A +LQ K++NYD DLF  L    +Q++     G +            ++R++ D
Sbjct: 248 MGFERLAAILQSKSSNYDTDLFSPLFDGIQQLSKAPVYGGSFPETSNAALLDTSYRILAD 307

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AY
Sbjct: 308 HARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHEKLLSQLVPIVVETLGEAY 364

Query: 338 PE----------LIQAKLLIEETLR-SEDERFGKTL-------DRGLVLLDGVLSHLGKD 379
           PE          LI  +  + + LR S  + F + L       D  L+   G +    + 
Sbjct: 365 PEMSAKQEAVIDLINHEHDVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREF 424

Query: 380 EI---------LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           ++         + GD  +KL DT+GL  +          LA ++    N   +  R RA 
Sbjct: 425 QVQRSKFPNNTIPGDFLYKLTDTYGLTEESF------LKLAELE----NMNCDLDRYRAE 474

Query: 431 AHSLGLGSGTTEK-----IWFSLKEKYGATQFIGYDLLRGS-KFMKEDRKVLCQKPPIDL 484
                + S  +++        +L+++    Q      LR +    K       +     +
Sbjct: 475 VSLAKIKSKESQREDGGICDVALEQRISEAQATLTKRLRPTDNSHKYVYSFDSENESYKI 534

Query: 485 TNGVSSIVKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
               S +V  ++   E+     S        + +V   + FY E+GGQ  D G       
Sbjct: 535 PTLRSRVVGMLLNDAEVSRTQGSRLQDTSDTLSIVTAASNFYYESGGQQSDAG------- 587

Query: 540 RLQITDVQKKAEG------IFVHH---AIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           ++ +++  K  +       I V H    +V    L         +   +  +L ++    
Sbjct: 588 QILVSNAHKPEQPHHLLNVIRVKHLNDCVVHVCRLAAPADDHFEVAIGDEVELQVDSGTR 647

Query: 591 HL--LHHALSTILGSHVS--------QNGSCITPDGLRFDV-THSKPITSAELKSIEDNV 639
            L   HH  + +L + +         Q  S +T +  + ++    K I  A+++ IED +
Sbjct: 648 QLNTCHHTATHLLNAAIRSLFNKVTYQVSSSVTSEQCKLELGLLGKRIQKADVQLIEDLI 707

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGGT 697
           N II     V   +++  D +      ++ G  Y ++ +R++SV+  D  + S  LC GT
Sbjct: 708 NRIICSATTVQVELVSAADVLQENDITMVPGEVYPEQGLRLISVQCPDMQLSSKELCCGT 767

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           HV++T E+    IV+            A+ GQ A + L
Sbjct: 768 HVTNTSELSCFCIVNLKQTNRARFAFTAVAGQAAENVL 805


>gi|291060374|gb|ADD73109.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 649

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 250/441 (56%), Gaps = 26/441 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ +L FF +  H ++   SL+P +DPT++FT +GM P      G+  P    +   QK
Sbjct: 54  LRSRYLAFFSQKAHVVISGKSLVPEHDPTVLFTTAGMHPLVPYLMGEPHPAGTRLVNAQK 113

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+D VG  N H TFFEMLGN+S G YFKE AI  +++ LT      +   R
Sbjct: 114 CLRTG----DIDAVG-DNSHLTFFEMLGNWSLGDYFKEEAIAFSFEFLTGAPWLGISPDR 168

Query: 125 LYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFF 177
           L +TV+  DE    DEE+  +W+++ G++   I  +   DN+W    ETGPCGP +EIFF
Sbjct: 169 LSVTVFAGDEAVARDEESAAIWERL-GIARTHIHFLPRADNWWGPTGETGPCGPDTEIFF 227

Query: 178 DQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D G   C     PG S    +Y+EIWN VFMQ+ +        L +  +DTGMG+ER   
Sbjct: 228 DTGVPPCSVSCRPGCS--CGKYVEIWNDVFMQYRKDADGRYRPLERYCVDTGMGIERTVA 285

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GIL 291
           VLQ K + YD ++F  L++   Q+ G +Y  +G + V+ R++ DH+R+++F++ D   + 
Sbjct: 286 VLQGKRSVYDTEIFTPLLERIGQLCGKRYGCQGAHDVSMRIVCDHIRAATFILGDPVPVR 345

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N G GYVLRRI+RR++ + R LG     +  L   +  +  + YPEL +    I + L
Sbjct: 346 PSNVGAGYVLRRIIRRSVRHGRKLGIDGEFLSSLARVVIGQYAAVYPELEEKATCIAQEL 405

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+ +F   L +G    + ++     G +  + G VAF+LYDT+G PL++ +++    G
Sbjct: 406 ANEERKFLDALRKGEAEYERMIPKFLQGTEREIPGSVAFRLYDTYGFPLELTEELARESG 465

Query: 410 LAGIDIISFNQALEEQRSRAR 430
           L  +D   F+ A +  ++ +R
Sbjct: 466 LR-VDRAGFDTAFQAHQACSR 485



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 88/140 (62%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+HV Q GS IT + LRFD +H +P+++ E   +E  VN+ I  +
Sbjct: 507 HTATHLLHQALRVVLGTHVQQKGSNITAERLRFDFSHPRPMSAQEKVQVEQLVNEQIRAD 566

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M+ EDA+ SGA AL G KY   V+V S+     G  S  +CGG HV+ TG++ 
Sbjct: 567 LPVCCEVMSLEDAMNSGAVALFGEKYESTVKVYSI-----GTFSREVCGGPHVARTGQLG 621

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  AG+RRI AI
Sbjct: 622 RFSIQKEQSSAAGVRRIRAI 641


>gi|225166099|ref|ZP_03727831.1| Alanine--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224799655|gb|EEG18152.1| Alanine--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 543

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 221/416 (53%), Gaps = 57/416 (13%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-------V 57
           + IR +FL++F K GH ++PS+SL+P + P L+FTN+GM  F  IF G   P       V
Sbjct: 4   AEIRQSFLDYFAKQGHTIVPSASLLP-DYPGLLFTNAGMNQFVPIFLGDRAPDVSHWAGV 62

Query: 58  YQAVTT----VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
             A  T     QKC+RAGGKHNDL++VG    HHT FEMLGN+SFG YFK  ++   W+L
Sbjct: 63  RPAKDTRAADTQKCIRAGGKHNDLEDVGYDTYHHTMFEMLGNWSFGDYFKRESLTWGWEL 122

Query: 114 LTKEFDLDQRRLYITVYDEDE----------EAFKLWK---KISGL-SADKIIRITTNDN 159
           LTK + +  +RL+ TVY  D+          EA  +W    + +GL  A  I+     DN
Sbjct: 123 LTKVWGIPAKRLFATVYAPDKTKGDPAEFDHEAAAIWTDLFRAAGLDPAVHIVHGNKKDN 182

Query: 160 FWSMAETGPCGPCSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
           FW M +TGPCGPCSEI F+      E     L  SS    R IEIWN VF+QF       
Sbjct: 183 FWMMGDTGPCGPCSEIHFNLLPSDDEAAGRALVNSS--SPRCIEIWNHVFIQFNANADGT 240

Query: 216 RFILPKMSIDTGMGLERMATV---------LQEKTNNYDIDLFKHLIQASEQVTGMKY-- 264
              L    +DTGMG ER+A +            + +NY+ D+F  L     +++G  Y  
Sbjct: 241 FAPLAAKHVDTGMGFERVAGIHATTHGFKDFSREPSNYNADVFTPLFAKVAELSGKTYRE 300

Query: 265 --------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                         +    +  RV+ DH R+ S  IADGI P NEGR YV+RRI+RR + 
Sbjct: 301 TVPATDADRKNLTEQERTDIAFRVLADHARTVSCAIADGIHPGNEGRNYVIRRILRRGIL 360

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           Y   LG        L+  +   +G  +PEL+  + +I   +RSE+E FG+ L++GL
Sbjct: 361 YGNKLGLKTGFFEQLVAPVVESLGPVFPELVAQQDIIRRVIRSEEESFGRALNKGL 416


>gi|15640001|ref|NP_219454.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026240|ref|YP_001934012.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094390|sp|O83980|SYA_TREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3323345|gb|AAC65968.1| alanyl-tRNA synthetase (alaS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018815|gb|ACD71433.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 605

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 250/441 (56%), Gaps = 26/441 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ +L FF +  H ++   SL+P +DPT++FT +GM P      G+  P    +   QK
Sbjct: 10  LRSRYLAFFSQKAHVVISGKSLVPEHDPTVLFTTAGMHPLVPYLMGEPHPAGTRLVNAQK 69

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+D VG  N H TFFEMLGN+S G YFKE AI  +++ LT      +   R
Sbjct: 70  CLRTG----DIDAVG-DNSHLTFFEMLGNWSLGDYFKEEAIAFSFEFLTGAPWLGISPDR 124

Query: 125 LYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFF 177
           L +TV+  DE    DEE+  +W+++ G++   I  +   DN+W    ETGPCGP +EIFF
Sbjct: 125 LSVTVFAGDEAVARDEESAAIWERL-GIARTHIHFLPRADNWWGPTGETGPCGPDTEIFF 183

Query: 178 DQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D G   C     PG S    +Y+EIWN VFMQ+ +        L +  +DTGMG+ER   
Sbjct: 184 DTGVPPCSVSCRPGCS--CGKYVEIWNDVFMQYRKDADGRYRPLERYCVDTGMGIERTVA 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GIL 291
           VLQ K + YD ++F  L++   Q+ G +Y  +G + V+ R++ DH+R+++F++ D   + 
Sbjct: 242 VLQGKRSVYDTEIFTPLLERIGQLCGKRYGCQGAHDVSMRIVCDHIRAATFILGDPVPVR 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N G GYVLRRI+RR++ + R LG     +  L   +  +  + YPEL +    I + L
Sbjct: 302 PSNVGAGYVLRRIIRRSVRHGRKLGIDGEFLSSLARVVIGQYAAVYPELEEKATCIAQEL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+ +F   L +G    + ++     G +  + G VAF+LYDT+G PL++ +++    G
Sbjct: 362 ANEERKFLDALRKGEAEYERMIPKFLQGTEREIPGSVAFRLYDTYGFPLELTEELARESG 421

Query: 410 LAGIDIISFNQALEEQRSRAR 430
           L  +D   F+ A +  ++ +R
Sbjct: 422 LR-VDRAGFDTAFQAHQACSR 441



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 88/140 (62%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+HV Q GS IT + LRFD +H +P+++ E   +E  VN+ I  +
Sbjct: 463 HTATHLLHQALRVVLGTHVQQKGSNITAERLRFDFSHPRPMSAQEKVQVEQLVNEQIRAD 522

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M+ EDA+ SGA AL G KY   V+V S+     G  S  +CGG HV+ TG++ 
Sbjct: 523 LPVCCEVMSLEDAMNSGAVALFGEKYESTVKVYSI-----GTFSREVCGGPHVARTGQLG 577

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  AG+RRI AI
Sbjct: 578 RFSIQKEQSSAAGVRRIRAI 597


>gi|313618845|gb|EFR90725.1| alanyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 533

 Score =  277 bits (709), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 305/567 (53%), Gaps = 53/567 (9%)

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
            I++ +R+E+ERF +TL+ GL +L+ +L +  +  ++ + G   FKLYDT G P+++ ++
Sbjct: 3   FIQKVIRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEE 62

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462
                GL  +D   F   ++EQR RAR+    + S   + ++  +L +K   ++F+GY+ 
Sbjct: 63  YAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTDK---SEFVGYNT 118

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                 T  VS I+  ++Q   +V+E  SG + +V+F +TPFYA
Sbjct: 119 ----------------------TEHVSEIL-YLIQDDTLVDEVASGSEAQVIFKETPFYA 155

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+
Sbjct: 156 ESGGQVADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRE 215

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ 
Sbjct: 216 TIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEX 275

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + + V+   M   +A   GA AL G KY + VRVV V     G +S  LCGG HV +T
Sbjct: 276 XWEQINVIIEEMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNT 330

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE+
Sbjct: 331 ADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQ 390

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSV 812
           +  + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+  
Sbjct: 391 LQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQF 445

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
           +D  + K   G+++L G  +  K +++  V+ED +   ++A  L +  A    GG GGGR
Sbjct: 446 VDNWKDKKIGGVLVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVA-TRCGGNGGGR 503

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N  +   A+  V++++K+
Sbjct: 504 PDMAQAGGKNPAELGTALDYVSTWVKE 530


>gi|314981337|gb|EFT25431.1| alanine--tRNA ligase [Propionibacterium acnes HL110PA3]
          Length = 428

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/417 (39%), Positives = 245/417 (58%), Gaps = 33/417 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  T+
Sbjct: 3   TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119
           +QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK  +    
Sbjct: 62  IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117

Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             D   +++TV        Y E D EA + W+  +G+  ++I   +  DN+W M   GP 
Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222
           GPCSEI+ D+G    P G P + E+  RY+EIWNLVF          ++ F     L  +
Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280
           +IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+R
Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P++
Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDV 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHG 395
           +     +     +E++ F +TL  G  +LD   V +     + L+G+ AF+L+DT+G
Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYG 411


>gi|315187025|gb|EFU20782.1| alanyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 603

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 167/442 (37%), Positives = 269/442 (60%), Gaps = 28/442 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  ++ FF+++GH  +   SLIP NDPT++FT +GM P      G E P  + +   Q+
Sbjct: 6   LREKYIRFFREHGHAEISGFSLIPENDPTVLFTTAGMHPLVPYILGAEHPAGKRLVDYQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+D VG  + H TFFEMLGN+S G YFKE AI+++++ LT  +   +D  R
Sbjct: 66  CIRTG----DIDAVGDAS-HLTFFEMLGNWSLGDYFKEEAIRMSYEFLTSPRWLGIDPGR 120

Query: 125 LYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177
           L +TV+  DE    DEE+ ++W+ + G+  ++I  ++   N+W  A +TGPCGP +E+F 
Sbjct: 121 LSVTVFAGDEMVPRDEESAEIWRSL-GIPEERIHFMSREHNWWGPAGKTGPCGPDTEMFI 179

Query: 178 DQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D G+  C P   PG S    +Y EIWN VFM++ ++       L +  +DTGMGLER   
Sbjct: 180 DTGKPPCGPDCKPGCS--CGKYFEIWNDVFMEYNKKADGTYEPLSRKCVDTGMGLERTTA 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GIL 291
           +LQ K + YD + F  +I+A E+ TG  Y  +    V+ R+I DH+++++F++ D  G+ 
Sbjct: 238 ILQGKQSVYDTEFFVPIIRAIEESTGAVYGRDPEKDVSIRIISDHIKAATFILGDERGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM-GSAYPELIQAKLLIEET 350
           P+N G+GYVLRR++RRA+ +AR LG  E   +HL   +  +M    YP L + +  + E 
Sbjct: 298 PSNVGQGYVLRRLIRRAIRHARKLG-VEGNFVHLPAQVVLDMYKEYYPLLAEKRDFVLEE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR E+++F KTL +G    + +L +L K+  +++ G +AF+LYDT+G P+++ +++    
Sbjct: 357 LRVEEDKFLKTLQKGEHEFEKMLPNLLKNPKKVIPGRIAFRLYDTYGFPIEVTEELAREH 416

Query: 409 GLAGIDIISFNQALEEQRSRAR 430
           GL  +D   F++  E  R R++
Sbjct: 417 GLT-VDRAGFDEEFERHRERSK 437



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 85/140 (60%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS ITP+ LRFD +H   +T  +++ +E+ VN  I ++
Sbjct: 459 HTATHLLHQALRIVLGPHVQQKGSNITPERLRFDFSHPDKLTPEQIRKVEEIVNQKIKED 518

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M  E+A   GA A    +Y+++V+V SV     G  S  +CGG HV  TG + 
Sbjct: 519 LPVTMEVMTLEEAKEKGAIAFFTDRYDEKVKVYSV-----GDFSKEVCGGPHVERTGVLG 573

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              IV E S  AG+RRI A+
Sbjct: 574 RFKIVKEQSSSAGVRRIRAV 593


>gi|325971945|ref|YP_004248136.1| alanyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027183|gb|ADY13942.1| alanyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 598

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 253/446 (56%), Gaps = 24/446 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  F++FF    H  +  +SLIP NDPT++FT +GM P      G + P  + +T
Sbjct: 6   TANELRQKFIDFFVSKDHVQISGASLIPENDPTVLFTTAGMHPLVPYILGSDHPSGKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R G    D++ VG  + H TFFEMLGN+S G YFK+ AI  +++ LT   +LD 
Sbjct: 66  DYQKCIRTG----DIEAVGDPH-HLTFFEMLGNWSLGDYFKKEAIAYSFEFLTAWLNLDI 120

Query: 123 RRLYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEI 175
            +L +TV+  DE    D+EA + W+   G+  ++I  +   DN+W  A ETGPCGP SE+
Sbjct: 121 SQLSVTVFAGDELVARDDEAAQTWESF-GIPRERIYFLPREDNWWGPAGETGPCGPDSEM 179

Query: 176 FFDQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           F D G   C P   PG S    +Y EIWN VFM +++ +      + +  +DTGMG+ER 
Sbjct: 180 FIDTGRPSCGPDCRPGCS--CGKYFEIWNDVFMGYKKNSDGTYEEMSRKCVDTGMGIERT 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD--G 289
             +LQ K + Y+ ++F  +I   E ++   Y  N  ++   R++ DH+R+S F++ D  G
Sbjct: 238 IAILQGKKSVYETEVFAPIIAGIENLSQKHYGDNEDIDISIRILADHIRTSVFILGDQRG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N G+GY+LRR++RRA+ +   LG     +  L   +    G  YPEL++ +  + +
Sbjct: 298 VAPSNVGQGYILRRLIRRAVRHGHKLGIEGAFLGDLALIVLELYGKPYPELVENREFVLK 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L  E+ +F +TL +G    + +L +L  G    ++G  AFKLYDT+G P+++ +++   
Sbjct: 358 ELAQEEAKFSETLAKGEREFEKMLPNLLKGNSRQISGRTAFKLYDTYGYPIELTKELAAE 417

Query: 408 RGLAGIDIISFNQALEEQRSRARAHS 433
                +D   F +A E+ +  +R+ S
Sbjct: 418 HDFT-VDEAGFKEAFEKHQEISRSGS 442



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATH+LH AL T+LG HV Q GS IT + LRFD TH  P+++ E++ +ED VN+ I +N
Sbjct: 461 HTATHMLHQALRTVLGEHVGQKGSNITIERLRFDFTHHSPMSAEEIQKVEDMVNEAIDRN 520

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V    M  ++A A GA A   +KY ++V+V S+     G +S  +CGG HV +T ++ 
Sbjct: 521 LAVKCETMTLDEAKAQGAIAFFDSKYGEQVKVYSI-----GDYSKEVCGGPHVENTSQMG 575

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I+ E S  AG+RRI+AI
Sbjct: 576 HFKILKEQSSSAGVRRIKAI 595


>gi|332180537|gb|AEE16225.1| alanyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 595

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 162/452 (35%), Positives = 261/452 (57%), Gaps = 34/452 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ ++EFF+   H  +   SLIP NDPT++FT +GM P      G+  P  + + 
Sbjct: 2   TANELRSKYIEFFKSKNHVEISGKSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGKRLV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
             QKC+R G    D+++VG ++ H TFFEMLGN+S G YFK+ +I  +++ LTK     +
Sbjct: 62  DYQKCIRTG----DIESVGDSS-HLTFFEMLGNWSLGDYFKQESIGFSFEFLTKPEYLHI 116

Query: 121 DQRRLYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCS 173
              +L +TV+  DE    D+E+   W+++ G+  ++I  +  +DN+W  A ETGPCGP +
Sbjct: 117 PLEKLSVTVFAGDESVPRDDESAARWEQL-GIPRERIHFLPRSDNWWGPAGETGPCGPDT 175

Query: 174 EIFFDQGE------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           EIF D G+      C PG   G      +YIEIWN VFMQ+ +        L    +DTG
Sbjct: 176 EIFIDTGKRACSENCRPGCGCG------KYIEIWNNVFMQYNKDADGVYTKLAHPCVDTG 229

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFL 285
           MG+ER   +LQ K + Y+ ++F  LI   E++TG  Y  +   +   R+I DH+R+++F+
Sbjct: 230 MGVERTVAMLQGKKSVYETEVFTPLIAVIEKLTGKTYGTDEASDTSIRIICDHVRAATFI 289

Query: 286 IAD--GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           + D  G+LP+N G GYVLRRI+RRA+ + R LG     +      +      AYPE+   
Sbjct: 290 LGDPKGVLPSNVGAGYVLRRIIRRAVRHGRKLGLDGEFLKEPAQTVIGMYRDAYPEVDAK 349

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIM 401
           + LI   L+ E+++F +TL +G    D ++ +L K+  +++ G VAF+LYDT G P+++ 
Sbjct: 350 RELILAELQREEQKFLETLKKGEAEFDKLVPNLLKNPAKVIPGRVAFRLYDTFGFPVELT 409

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           +++    GL  ++   F+ A ++ +  +RA S
Sbjct: 410 EELAGEHGLT-VNREEFDAAYKKHQELSRAGS 440



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H++Q GS IT + LRFD +H  P+T  E++ +ED VN+ I ++
Sbjct: 459 HTATHLLHKALKMVLGDHIAQKGSNITAERLRFDFSHPAPMTKEEIQRVEDIVNEQIRRD 518

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   +M+ E+A   GA AL G KY  +V+V ++     G  S  +CGG HV  TG I 
Sbjct: 519 LKVTMEVMDLEEAKKGGATALFGEKYESKVKVYTI-----GDFSKEVCGGPHVEHTGLIG 573

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  AG+RRI A+
Sbjct: 574 TFKIQKEQSSSAGVRRIRAV 593


>gi|307718489|ref|YP_003874021.1| alanyl-tRNA synthetase AlaRS [Spirochaeta thermophila DSM 6192]
 gi|306532214|gb|ADN01748.1| alanyl-tRNA synthetase AlaRS [Spirochaeta thermophila DSM 6192]
          Length = 603

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 269/442 (60%), Gaps = 28/442 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  ++ FF+++GH  +   SLIP NDPT++FT +GM P      G E P  + +   Q+
Sbjct: 6   LREKYIRFFKEHGHAEISGFSLIPENDPTVLFTTAGMHPLVPYILGAEHPAGKRLVDYQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124
           C+R G    D+D+VG  + H TFFEMLGN+S G YFKE AI+++++ LT  +   +D  +
Sbjct: 66  CIRTG----DIDSVGDAS-HLTFFEMLGNWSLGDYFKEEAIRMSYEFLTSPRWLGIDPEK 120

Query: 125 LYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177
           L +TV+  DE    DEE+ ++W+ + G+   +I  ++   N+W  A +TGPCGP +E+F 
Sbjct: 121 LSVTVFAGDEMVPRDEESAEIWRSL-GIPDGRIHFMSREHNWWGPAGKTGPCGPDTEMFI 179

Query: 178 DQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D G+  C P   PG S    +Y EIWN VFM++ ++       L +  +DTGMGLER   
Sbjct: 180 DTGKPPCGPDCKPGCS--CGKYFEIWNDVFMEYNKKADGSYERLDRRCVDTGMGLERTTA 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GIL 291
           +LQ K + YD + F  +I+A E+ TG  Y  +    V+ R+I DH+++++F++ D  G+ 
Sbjct: 238 ILQGKQSVYDTEFFVPIIRAIEESTGAVYGKDPEKDVSIRIISDHIKAATFILGDERGVT 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM-GSAYPELIQAKLLIEET 350
           P+N G+GYVLRR++RRA+ +AR LG  E   +HL   +  +M    YP L + +  + E 
Sbjct: 298 PSNVGQGYVLRRLIRRAIRHARKLG-VEGNFVHLPAQVVLDMYKEYYPLLAEKRDFVLEE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           LR E+++F KTL +G    + +L +L K+  +++ G +AF+LYDT+G P+++ +++    
Sbjct: 357 LRGEEDKFLKTLQKGEHEFEKMLPNLLKNPKKVIPGRIAFRLYDTYGFPIEVTEELAREH 416

Query: 409 GLAGIDIISFNQALEEQRSRAR 430
           GL  +D   F++  E  R R++
Sbjct: 417 GLT-VDRAGFDEEFERHRERSK 437



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS ITP+ LRFD +H + +T  +++ +E+ VN  I ++
Sbjct: 459 HTATHLLHQALRIVLGPHVQQKGSNITPERLRFDFSHPEKLTPEQIRKVEEIVNQKIKED 518

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M  E+A   GA A    +Y+++V+V SV     G  S  +CGG HV  TG + 
Sbjct: 519 LPVTMEVMTLEEAKEKGAIAFFTDRYDEKVKVYSV-----GDFSKEVCGGPHVERTGVLG 573

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              IV E S  AG+RRI A+
Sbjct: 574 RFKIVKEQSSSAGVRRIRAV 593


>gi|260822503|ref|XP_002606641.1| hypothetical protein BRAFLDRAFT_72608 [Branchiostoma floridae]
 gi|229291985|gb|EEN62651.1| hypothetical protein BRAFLDRAFT_72608 [Branchiostoma floridae]
          Length = 1128

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 243/839 (28%), Positives = 384/839 (45%), Gaps = 136/839 (16%)

Query: 150  KIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            +I+     DNFW M + GPCGPC+EI +D +G+     L  +  +    +E+WNLVFMQF
Sbjct: 309  RILPCGMRDNFWEMGDVGPCGPCTEIHYDHRGQRDASRLVNT--DSPEVVELWNLVFMQF 366

Query: 209  EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN 267
             +++      LP+  +DTGMGLER+  V+Q K +NYD DLF  L+ A  + T ++ Y G 
Sbjct: 367  NRESDGTLRPLPRHVVDTGMGLERLVAVMQGKLSNYDTDLFSPLLHAIHKGTKVQPYSG- 425

Query: 268  NIVN----------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLG 316
             +V           +R+I DH+R+ +  IADG++P  + R  VLR I+RRA+ YA+  LG
Sbjct: 426  -LVGGEDVGGVDEAYRIIADHVRTLTIAIADGVMPGQQWRELVLRTILRRAVRYAQERLG 484

Query: 317  YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
              E L+  L+P +   +G A+PEL+  +  + +T+  ++  F   L++G  L+   +  L
Sbjct: 485  APEGLVASLVPVVVQNLGEAFPELLSNQEKVMDTINEDEALFLSNLEKGKKLMSKTIRKL 544

Query: 377  GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG----------LAGIDIISFNQALE-EQ 425
             K      +V + L+++ GLP D++Q ++  RG          + G  +    Q L+  Q
Sbjct: 545  DKSAFFPSEVGWFLHNSLGLPTDLVQSMVTDRGCRMDMEHYSRIEGDALQKKAQGLQIAQ 604

Query: 426  RSRARAHSL----GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
                 AHSL     LG   T+    SLK  Y  T+   YD      F   + +VL     
Sbjct: 605  VPTLDAHSLQQLQALGVPPTDN---SLKYNYRLTESGKYD------FPSPEGRVL----- 650

Query: 482  IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                        ++  +GE+V     G    V+ D++ FY EAGGQ  D G    + + +
Sbjct: 651  ------------SLYMKGELVGSVGPGDVCSVILDRSCFYPEAGGQESDQGNMTKNEVVV 698

Query: 542  QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
              TD  +   G  +H    +   L  + ++ L ID + R      H+ATHLL+HAL  +L
Sbjct: 699  FTTDNVQVCGGYVLHQGQAQTS-LTVDDTVQLNIDQERRLSCMQRHTATHLLNHALREVL 757

Query: 602  GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII-AQNLP----------VV 650
            G    Q GS + P+ LRFD +     + AEL+ +E+ V  ++  Q+LP           V
Sbjct: 758  GEACEQRGSHVGPNRLRFDFSVKSLPSPAELRRVEETVQAMVDRQSLPSPAELRRVEETV 817

Query: 651  TRIMNREDAIASGAAAL-----------LGTKYNDRVRVVSV--EYED---------GGV 688
              +++R++ + +    L           +  +Y D VRVVSV    E+           +
Sbjct: 818  QTMVDRQECVYTREVPLSQAKEVEGIRTMDEEYPDPVRVVSVGTPVEELMTNPTSGAASL 877

Query: 689  HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSL 745
             S  LC GTHV +T  I    I  E     G RRI A+TG     AR      +E+ K+L
Sbjct: 878  TSVELCCGTHVHNTASIKAFVISYERRNEIGSRRIIAVTGDEAVEARKTGAELEERAKTL 937

Query: 746  ASFLKVSQGNVVGRVEEIWEEYRKL--------------------------QLIHAKRKL 779
               +   + + +  +E ++ +  KL                          Q   A +KL
Sbjct: 938  ERLVLQEETSSLEEMEGVYRDVGKLIRRVDTASLPLWKRLELQVSLDQLQSQANRAVKKL 997

Query: 780  -QLNVEDLSCHKIA--------DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             Q NVE ++  K+A        DV  ++      + K L++ +    +      IML G 
Sbjct: 998  RQQNVETVA-QKVARTLVDRNEDVVLVTDTGLGPNLKVLRTTVRICSELAPDTPIMLFG- 1055

Query: 831  SKEKKASVLIV--VTEDLLDRFNAVD--LARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            +  + ASV +   V E +L R       L ++ A +   G G  R   A  G P+G +A
Sbjct: 1056 TDPRTASVRVACKVPEAMLSRGLGARTWLDQVMADIKAKGRGDERSATAAGGNPSGTEA 1114



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 14/151 (9%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           IR TFL+F++ K  H L+PSSS++P NDPTL+F N+GM  FK +  G   P      Y+ 
Sbjct: 56  IRKTFLDFYKVKYDHLLVPSSSVVPRNDPTLLFINAGMNQFKPLIQGTVDPRSDMAKYRR 115

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDL++VGR   HHT FEMLGN+SFG +FK  A  + W+LLT  + +
Sbjct: 116 VVNSQKCIRAGGKHNDLEDVGRDCYHHTVFEMLGNWSFGDFFKREACAMTWELLTDVYRI 175

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKI 143
              RLY+T +        + D E  ++W  +
Sbjct: 176 PADRLYVTYFGGDPDLGLEADLECREIWASL 206


>gi|160879109|ref|YP_001558077.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|205829960|sp|A9KLZ5|SYA2_CLOPH RecName: Full=Alanyl-tRNA synthetase 2; AltName: Full=Alanine--tRNA
           ligase 2; Short=AlaRS 2
 gi|160427775|gb|ABX41338.1| Alanine--tRNA ligase [Clostridium phytofermentans ISDg]
          Length = 591

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/442 (35%), Positives = 258/442 (58%), Gaps = 30/442 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  ++++F++ GH+ + S+SL+P NDPT++FT +GM P      G+  P    + +V
Sbjct: 4   NELRKMYVDYFKERGHQEIASASLLPENDPTVLFTTAGMHPLVPYLLGENHPKGTRLVSV 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR G    D+D VG  + H TFFEMLGN+S G YFKE +I +++D LT   ++ + +
Sbjct: 64  QKCVRTG----DIDEVG-DDTHLTFFEMLGNWSLGEYFKEESISISYDFLTTCLNIPKEK 118

Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177
           L +TV++       DEE  + WK   GL  ++I      +N+W  A +TGPCG  +EIF+
Sbjct: 119 LAVTVFEGDELVPRDEEVSQTWKS-KGLQDNQIFYYGREENWWGPAGQTGPCGTDTEIFY 177

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D G+   G   G + +  +Y+EIWN VFMQ+ ++       + + ++DTGMG ER+ T+L
Sbjct: 178 DMGKPSCGVNCGPACDCGKYVEIWNNVFMQYHKKPDGSYEEMKQKNVDTGMGFERVLTIL 237

Query: 238 QEKTNNYDIDLF-------KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG- 289
              TN Y+ +LF         +I+A+E     K       + R+I +H+R+ +FL+ D  
Sbjct: 238 NGYTNVYETELFLPVKNRLDEIIEANEAKLSEK-------SKRIICEHIRAVTFLLGDPK 290

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            I+P+N  +GY+LRR++RR + + + +     ++  L   +  + GS Y EL + +L I 
Sbjct: 291 MIVPSNSEQGYILRRLIRRMIRHLKQVSIENNVLCKLSKVIVEQYGSIYVELRENELFIM 350

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E L  E + F KTLDRGL         +G+++ILNG+++FKLYDT G P++   ++    
Sbjct: 351 EQLEKEYDLFSKTLDRGLKNAKLYFDQVGEEKILNGELSFKLYDTFGFPIEFTIELASEM 410

Query: 409 GLAGIDIISFNQALEEQRSRAR 430
            +  +D+ ++NQ   E + ++R
Sbjct: 411 EIT-VDVEAYNQKFAEHQKKSR 431



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL+ AL T+LG+ V Q GS IT + LRFD +  + +T  EL+ +E  VN+ I   
Sbjct: 453 HTATHLLNGALRTVLGTDVFQRGSNITEERLRFDFSFHRKLTKEELEEVERIVNEAIRNQ 512

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V+   M  ++A   GA  +   KY + V+V  +       +S  +CGG HV +T E+ 
Sbjct: 513 IDVLCEEMTVKEAKELGAVGIFEDKYGEVVKVYMIP-----GYSKEICGGPHVKNTSELK 567

Query: 707 LLYIVSESSIRAGIRRIEAITG 728
               V E +  AG+RRI+A+ G
Sbjct: 568 SFRTVKEEASSAGVRRIKAVIG 589


>gi|312601159|gb|ADQ90414.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 743

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 192/634 (30%), Positives = 317/634 (50%), Gaps = 63/634 (9%)

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSEEGERYIEIW 201
           G S +K+I+ +   NFW + + GPCGPCSEI+FD+G         L  +  E +R+IEIW
Sbjct: 2   GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFDSRGSELIKNEIENDRFIEIW 60

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VF +F    +Q    L   +IDTG G ER+ ++LQ+   NYD DLF  +I   E+ T 
Sbjct: 61  NIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGPTNYDTDLFLPIIAEIEKSTV 120

Query: 262 MKYEGNNIV-----------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
            +Y+  N             + R+I DH+R+ +  I DG+ P+N  RGY++RR++RRA  
Sbjct: 121 FQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGVQPSNLHRGYIIRRLIRRAYW 180

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
             + LG + P +  L+  +   +   +     +K+++     +E+E F KTL+ G  LL+
Sbjct: 181 NGKKLGISHPFLYKLVEIVGKTLDYRFDIPAISKIIL-----NEEENFAKTLEIGYNLLE 235

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
             L  + K++I    V FKL++T+G P+++ ++IL  + +        +Q +E Q   ++
Sbjct: 236 SQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNID----FDLSQLVEFQEKHSQ 289

Query: 431 AHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                  +G  +K+  SL + K   + FIGY                        T+ + 
Sbjct: 290 ISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-----------------------THHIE 325

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           + +  +  + E V E        V+F++TPFYA AGGQ  D G  + +   ++I DV K 
Sbjct: 326 TKISFLANKDEEVAETSGENLSYVIFEKTPFYATAGGQKHDQGWIVQNNSTIEILDVFKD 385

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
               F+++  V +G +     + L +D +NR  L  NHS THLL  +L    GS + Q G
Sbjct: 386 K---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSGTHLLFASLRQEFGSEIKQLG 442

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           S    D L FD   ++  +  E+KS+E+ +N  I Q +     + N E+     A   L 
Sbjct: 443 SDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKRKYLVTNLEETQKLNAIMTLE 502

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            ++Y D   +  V ++     ++ LCGGTH+ +T  +    I+S  S  +GI RI A+T 
Sbjct: 503 ESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKFTILSCQSKGSGIYRIRAVTS 559

Query: 729 -QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +    L G+ +++ S  S LK    N + ++E
Sbjct: 560 WNKYFEFLKGKIQEILSKISALK----NKIKKIE 589


>gi|224534195|ref|ZP_03674773.1| alanine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514297|gb|EEF84613.1| alanine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 594

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 251/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LDKLRKKYIDFFKSKKHFQIIGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKIKCSFDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GI 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  GI
Sbjct: 237 AFLQGKSSVYDTDAFIPIIKRIEFISGKTYGQKEDDDRCIRIISDHVKAACFILADSSGI 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I++ 
Sbjct: 297 FPSNVGQGYVLRRLIRRSVRYAKKLGIKSYFLADLVDSVETIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L    I  GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSIEEEKFFKTLFQGEQEFIKITRNLSSKTI-PGDIAFKLYDTYGFPYELTEELAFEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID + F++  ++ +  ++
Sbjct: 416 -NIDKLGFDEYFKKHQKASK 434



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HSK +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVKQKGSNITAERLRFDFVHSKKMTDDEIKRVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY++ V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKSIMELSEAREKGAMALFGEKYDNLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|321309602|ref|YP_004191931.1| alanyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801446|emb|CBY92092.1| alanyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 841

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 224/787 (28%), Positives = 362/787 (45%), Gaps = 96/787 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + S +R  +++FF   GH  + + SLIP   D +L+F NSG+   K+ F+G   P  + +
Sbjct: 6   SASELRKKWIDFFVSKGHLDVSNRSLIPPSTDKSLLFINSGVAAIKSYFSGDTPPPSRRL 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK +R G    D++++G + RHHT+FEMLGNFS G YFK  AI+ AW+ L K   +D
Sbjct: 66  VSCQKVIRTG----DIESIGESVRHHTYFEMLGNFSLGDYFKTEAIEWAWEFLIKHLGMD 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY+T+Y ED EA   WKK   +  D+II    + NFW M   GPCGPC+EI+FD+G 
Sbjct: 122 PDRLYVTIYKEDREAMAEWKK--WIPEDRIILGDKDTNFWDMG-VGPCGPCTEIYFDRGS 178

Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                 I   L  ++ E  RY+EIWN+VF +F   + Q     P+ +IDTG GLER+ +V
Sbjct: 179 SYDPDDIGLDLLRNNVENNRYLEIWNIVFSEFLNIDGQ-IVPAPQKNIDTGAGLERILSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI---VDHLRSSSFLIADGILPA 293
           L+ K +N++  LF  ++   +     K       + +V     D+ R+S  L+  GI   
Sbjct: 238 LEGKDSNFESSLFSPIVNFIDSHFSKK-------DKKVFWSAADYFRASCILLDSGINFG 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA----YPELIQAKLLIEE 349
            +GR YVLR+I R+ +   + L   E L       +   +G +    YP ++Q K  +  
Sbjct: 291 GKGREYVLRKIFRKTIWLFKSLEDKE-LDFTFFSGVVNVVGESLDGFYPNILQNKESLSR 349

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L  E     K  ++   LL  ++     D  +     F L  +HGL L ++Q       
Sbjct: 350 ILHEEYLLSVKAYEKSHALLMQLIKKY--DAEIPAKEIFDLVTSHGLELWLIQ------- 400

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              I +   N+  +E++  A                  L E++   + I ++    S F+
Sbjct: 401 ---ISLAGLNRTFDEKQYEA------------------LMEEH---KNISFNRNISSAFI 436

Query: 470 KEDRKVLC--QKPPIDLTN--GVSSIVKAIVQQGEIVEEAVSGQKVE----VVFDQTPFY 521
           K+  K+L    K  ID ++    + ++    +  E++      QK+E    ++ D+T  +
Sbjct: 437 KKHPKLLALELKSSIDYSSPEKKAKVIAIFNEDFELL------QKLEGIGYLLLDETVVF 490

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
             +GGQ  D G   G  I+  +    K   G  +H      G       ++++ D   R 
Sbjct: 491 PMSGGQDSDEGYINGKSIKESL----KAPNGQVLHKV---EGSFSLGEEVMVSHDKNKRG 543

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN--V 639
            L  +H+A HLL   L   +     +       D    +V  S  I       +  N  +
Sbjct: 544 GLEKHHTAEHLLFELLKREIDKSAERVSGQKYSDYFNLEVNFSSNIEKKNFNLVHLNKEL 603

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGG 696
             +I ++LPV   ++  E A +          Y    D +R+V     D G +S  LC G
Sbjct: 604 CSLIEEDLPVKYELLTLEKAKSLNIPIHFEEVYRKSEDSLRLV-----DIGGYSRELCIG 658

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV ST EI    IV     ++ I + + I G +  S  +       S  +FL +++ + 
Sbjct: 659 THVQSTKEIEDALIVGFKKKQSSIYKFKVIVGSKRVSDFLSDK---SSREAFLSLNEEDE 715

Query: 757 VGRVEEI 763
           + + +EI
Sbjct: 716 ILKNKEI 722


>gi|119953017|ref|YP_945226.1| alanyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861788|gb|AAX17556.1| alanyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 593

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 253/441 (57%), Gaps = 23/441 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  ++EFF+  GH  +   SLIP ND T++F  +GM P      G+  P    +  
Sbjct: 3   LDELRKKYIEFFKSKGHCEIAGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDMLVD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKELSVKYSFEFLTSPDYLNIS 117

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           + RLY++V++ DE      +   +W+ + G+  D+I  ++   NFW  +   GPCGP +E
Sbjct: 118 KDRLYVSVFEGDENIPRDTKTASVWESL-GIPKDRIFYLSREHNFWGPVGNVGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF D G+         +    +Y EIWN VFMQ+++        L +  +DTGMG+ER  
Sbjct: 177 IFVDTGKEKCSNECDITCSCGKYFEIWNNVFMQYKRDENGNYEELNRKCVDTGMGIERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIAD--G 289
           T LQ K++ YD D FK +I   E+++G  Y G N+ +    R+I DH+++S F++AD   
Sbjct: 237 TFLQGKSSVYDTDAFKPIIDKIEKISGKIY-GQNLEDDKSIRIIADHIKASCFILADNFA 295

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP+N G+GYVLRRI+RRA+ YA+ LG    ++  L+  +     S Y EL + K  I+ 
Sbjct: 296 VLPSNVGQGYVLRRIIRRAIRYAKKLGMESHVLADLVDPVEEIYKSFYKELTENKDFIKA 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L +E+++F KTL  G      ++ HL   +++ G++AFKLYDT+G P +I +++    G
Sbjct: 356 ELNTEEKKFFKTLRHGEQEFIKLIQHLSS-KLIPGEIAFKLYDTYGFPYEITEELATEYG 414

Query: 410 LAGIDIISFNQALEEQRSRAR 430
            + ID   F +   + R  ++
Sbjct: 415 FS-IDKTGFEEHFRKHRKVSK 434



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD +H   +T  E+K +ED VN  I   
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFSHPYKMTDDEIKRVEDMVNLQIKNK 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   +M+ +DA+A GA AL G KY + V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVNRTVMSLDDALAKGAMALFGEKYEEIVSVYEI---DG--FSIEVCGGPHVKNTSELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
           +  I  E +  +G+RRI+ I
Sbjct: 571 IFKIQKEQASSSGVRRIKGI 590


>gi|320534359|ref|ZP_08034846.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133441|gb|EFW25902.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 632

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 181/522 (34%), Positives = 277/522 (53%), Gaps = 48/522 (9%)

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
           V  RV+ DH+RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL A 
Sbjct: 15  VRMRVVADHVRSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTAS 74

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------ILN 383
              M ++YPEL      I E    E++ F +TL  G  +LD  ++   K+       +++
Sbjct: 75  KDAMKASYPELETGWSAICEVAYGEEDAFRRTLAAGTTILDIAVASAKKEAGRTGRPLVS 134

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE- 442
           G  AF+L+DT+G P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  + 
Sbjct: 135 GKSAFELHDTYGFPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADI 193

Query: 443 KIWFSL-KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           +++  L KE  G + F+GY                        T   +    A V  G +
Sbjct: 194 RVFRELEKEMGGGSTFLGY------------------------TESSAEATVAGVLVGGV 229

Query: 502 VEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAI 559
            +  V+   +VEV+ D+TPFYAE GGQL D G   + DG  +++ DVQ   +G+ VH   
Sbjct: 230 PQSVVTAPAEVEVILDRTPFYAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGT 289

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +  G +         ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RF
Sbjct: 290 LTEGTIAVGEKAFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRF 349

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D  H   +   ++  IE+ VN  ++++L V   +M+ + A A+GA AL G KY   VRVV
Sbjct: 350 DFRHGSALAGDQISGIEERVNARLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKEVRVV 409

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           S+    GG  S  LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A     G  
Sbjct: 410 SI----GGDWSKELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGA----YGYQ 461

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKL 779
            K  +L S L    G   GR E++ E    L  +L  A+++L
Sbjct: 462 AKEHALVSQLSTMVG---GRPEDLPERVESLMTRLKDAEKRL 500


>gi|187918093|ref|YP_001883656.1| alanyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|205829992|sp|B2RZT0|SYA_BORHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119860941|gb|AAX16736.1| alanyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 593

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 252/441 (57%), Gaps = 23/441 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +  
Sbjct: 3   LDELRKKYIDFFKSKGHCEIAGKSLIPDNDSTVLFNTAGMQPLVPYLLGEMHPSGDMLVD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKELSVKYSFEFLTSPNYLNIS 117

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           + +LY++V++ DE      E   +W+ + G+  D+I  ++   NFW  +  TGPCGP +E
Sbjct: 118 KDKLYVSVFEGDESIPRDTETANVWESL-GIPKDRIFYLSREHNFWGPVGNTGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF D G+         +    +Y EIWN VFMQ+++        L +  +DTGMG+ER  
Sbjct: 177 IFVDTGKEKCSVRCDITCSCGKYFEIWNNVFMQYKRDENGNYEELKRKCVDTGMGIERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIAD--G 289
           T LQ K++ YD D FK +I   E+++G  Y G N+ +    R+I DH+++S F++AD   
Sbjct: 237 TFLQGKSSVYDTDAFKPIIDKIEKISGKIY-GQNLEDDRSIRIIADHIKASCFILADNFA 295

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP+N G+GYVLRRI+RRA+ YA+ LG    ++  L+ ++     S Y EL + K  I+ 
Sbjct: 296 VLPSNIGQGYVLRRIIRRAIRYAKKLGMESYVLADLVDSVEEIYKSFYKELTEKKDFIKA 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L  E+E+F KTL  G      ++  L    I  GD++FKLYDT+G P +I +++    G
Sbjct: 356 ELNVEEEKFFKTLRHGEQEFIKLIQQLSSKSI-PGDISFKLYDTYGFPYEITEELATEYG 414

Query: 410 LAGIDIISFNQALEEQRSRAR 430
            + ID   F +  ++ +  ++
Sbjct: 415 FS-IDKAGFEEHFKKHQEVSK 434



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  H   +T  E+K +ED VN  I   
Sbjct: 456 HTATHLLHKALQLVLGEHVRQKGSNITAERLRFDFNHPYKMTDDEIKQVEDMVNLQIKNK 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   +MN +DA+A GA AL G KY D V V  +   DG   S  +CGG HV +TGE+ 
Sbjct: 516 LSVKRSVMNLDDALAKGAMALFGEKYEDIVSVYEI---DG--FSIEVCGGPHVKNTGELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E +  +G+RRI AI
Sbjct: 571 TFKIQKEQASSSGVRRIRAI 590


>gi|14589371|gb|AAK70626.1|AC091238_4 Putative cytosolic tRNA-Ala synthetase [Oryza sativa Japonica
           Group]
          Length = 351

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 142/324 (43%), Positives = 190/324 (58%), Gaps = 33/324 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P      +
Sbjct: 9   ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +A  T QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ 
Sbjct: 69  RRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQV 127

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPC
Sbjct: 128 YKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPC 185

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPC+EI FD+ G      L   + +    IEIWNLVF+QF ++       LP   +DTGM
Sbjct: 186 GPCTEIHFDRVGNRDAASL--VNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGM 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGN------NIVN--HRVIVD 277
           G ER+ ++LQ K +NYD D+F  +  A  Q+ G     Y G       + V+  +RV+ D
Sbjct: 244 GFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVAD 303

Query: 278 HLRSSSFLIADGILPANEGRGYVL 301
           H+R+ SF IADG  P   G G+ L
Sbjct: 304 HIRTLSFAIADGSQPG--GMGWTL 325


>gi|213648835|ref|ZP_03378888.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 401

 Score =  260 bits (665), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 154/388 (39%), Positives = 237/388 (61%), Gaps = 13/388 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H  
Sbjct: 2   GKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQAIG-HLG 60

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LR
Sbjct: 61  KLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVLR 120

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H++ +  +E++ +ED VN  I +NLP+ T IM+ + A A GA AL G KY++RVRV
Sbjct: 121 FDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDAAKAKGAMALFGEKYDERVRV 180

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +S+     G  S+ LCGGTH S TG+I L  I+SES   AGIRRIEA+TG+ A + +  Q
Sbjct: 181 LSM-----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQ 235

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNF 796
            ++L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  D+N 
Sbjct: 236 SDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEKELQQLKDQAAAQESANLSSKAVDLNG 295

Query: 797 MSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +  ++SE   ++ K L++++D L+ ++ S +I+L  +  E K S++  V++D+ DR  A 
Sbjct: 296 VKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKAG 354

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 355 ELIGMVAQQV-GGKGGGRPDMAQAGGTD 381


>gi|195441674|ref|XP_002068628.1| GK20581 [Drosophila willistoni]
 gi|194164713|gb|EDW79614.1| GK20581 [Drosophila willistoni]
          Length = 1006

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 236/441 (53%), Gaps = 60/441 (13%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR TF+++F   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++ V   Q
Sbjct: 17  IRKTFIDYFTISHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KCVR GGKHNDL  VG+   HHTFFEMLGN+SF  YFK  A  +A +LL   +++D RRL
Sbjct: 77  KCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFRDYFKREACSMALELLRGPYNIDTRRL 136

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  D+        E F++W+ + G  + +I+     DNFW M  TGPCGPC+EI  
Sbjct: 137 YVTYFAGDKVLGIPADLECFEIWRSL-GFPSSRILPFGCRDNFWEMGTTGPCGPCTEIHI 195

Query: 178 DQGECIPGGLPGSSEEGERYI--------EIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           D    +      S +E  + +        E+WNLVF+Q+ + +      LP   +DTGMG
Sbjct: 196 DHQPEL-----ASVDERAKLVNAGRSDLTELWNLVFIQYNRHSDGSITQLPSHHVDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNIVN--HRVIVDHLRSS 282
            ER+  +LQ K++NYD DLF  +  +  Q++        ++ + +++  +R++ DH R  
Sbjct: 251 FERLTAILQNKSSNYDTDLFTPIFDSIHQLSRAPAYTGSFQKDAVLDTSYRILADHARMI 310

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL-I 341
           +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE+ I
Sbjct: 311 TTCLADGMLPDQNQK---LRRVLRKALNLSEHVFAQENLLSRLVPIVVETLGEAYPEMSI 367

Query: 342 QAKLLIE---------ETLRSEDER--------FGKTLDRGLVLLDGVLSHLGKDEI--- 381
           +   +IE         + LR    +        F K  D  L+   G +    + ++   
Sbjct: 368 KQSDVIELINHEHDVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYREFQVQRS 427

Query: 382 ------LNGDVAFKLYDTHGL 396
                 + GD  +KL DT+GL
Sbjct: 428 KFNNNTIPGDFLYKLTDTYGL 448



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 130/286 (45%), Gaps = 39/286 (13%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA------IVERGI 564
           + +V + + FY E+GGQ  D G  +   +R +  D +K+ +   V H       I   G 
Sbjct: 559 ISIVTEASNFYYESGGQEEDKGHLL---VRSKEEDSKKQLQVESVKHLNNCVVHICRLGP 615

Query: 565 LRTEMS------------LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             TE +            + L ++ ++R+  + +H+ATHLL+ A+  +      Q  S +
Sbjct: 616 SETEPTQSEEFQLSLGDEVELLVNAEHRQLNTCHHTATHLLNAAIRCLFHKVTYQVSSSV 675

Query: 613 TPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-GT 670
           T +  + ++    K +   +++ IED +N +I   +PV    +N    +      ++ G 
Sbjct: 676 TSEQCKLELAVLGKRLQKTDVELIEDLINRLICLGVPVEVDQLNAAQVLQQNDITMVPGE 735

Query: 671 KYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            Y ++ +R+V V  ++  + S  LC GTHV++T E+    IV+            A+ GQ
Sbjct: 736 VYPEQGLRLVQVASDELKLLSKELCCGTHVTNTRELSCFCIVNLKQTNRARFAFTAVAGQ 795

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
            A        E +   A+ L+        RV+ + E+++K +L +A
Sbjct: 796 AA--------EHVLKTAALLR-------HRVDVLAEQFQKDKLTNA 826


>gi|255028973|ref|ZP_05300924.1| alanyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 520

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 292/555 (52%), Gaps = 51/555 (9%)

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  +D
Sbjct: 1   RFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VD 59

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              F   ++EQR+RARA    + S   + ++  +L EK   + F+GY+            
Sbjct: 60  HAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYNS----------- 105

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                      T  VS I+  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G 
Sbjct: 106 -----------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKGT 153

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHLL
Sbjct: 154 IESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLL 213

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV   
Sbjct: 214 HRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEE 273

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVSE
Sbjct: 274 MPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSE 328

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R++   
Sbjct: 329 TGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREV--- 385

Query: 774 HAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             KR+ +  +  L+    AD          V  ++  ++  D  +L+  +D  + K   G
Sbjct: 386 --KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGG 443

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I++L  +  +K   +  V  E +   ++A  L +  A    GG GGGRP MAQ+GG N  
Sbjct: 444 ILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPA 502

Query: 884 KADQAIAGVASFLKK 898
           +   A+  V++++K+
Sbjct: 503 ELGTALDYVSTWVKE 517


>gi|203284140|ref|YP_002221880.1| alanyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083583|gb|ACH93174.1| alanyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 592

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 152/422 (36%), Positives = 247/422 (58%), Gaps = 22/422 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +  
Sbjct: 3   LDELRAKYIDFFKSKGHCEIVGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDMLVD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKELSVEYSFEFLTSPHYLNIS 117

Query: 122 QRRLYITVYDEDEEAFK------LWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           + +LY++V++ D++  +      +W+K+ G+S D+I  ++   NFW  +   GPCGP +E
Sbjct: 118 KDKLYVSVFEGDKDIPRDVKTADIWEKL-GISKDRIFYLSREHNFWGPVGNVGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF D G          +    +Y EIWN VFMQ+ + N      L +  +DTGMG+ER  
Sbjct: 177 IFVDTGIDKCSNTCDITCSCGKYFEIWNNVFMQYNKDNNGNYEELKRKCVDTGMGIERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADG-- 289
           T LQ K++ YD D F+ +I+  E+++G  Y G+N+ +    R+I DH+++S F++AD   
Sbjct: 237 TFLQGKSSVYDTDAFRPIIKQIEKISGKVY-GDNLEDDRAIRIIADHIKASCFILADNFS 295

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP+N G+GYVLRR++RRA+ YA+ LG     +  L+ ++     S Y E+ + K  I+ 
Sbjct: 296 VLPSNVGQGYVLRRLIRRAIRYAKKLGMESHCLADLVDSVEDIYKSFYKEITEKKDFIKN 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L  E+E+F KTL  G      ++  L   +++ GD++FKLYDT+G P +I +++    G
Sbjct: 356 ELNIEEEKFFKTLRYGEQEFVKLIHQLSS-KLIPGDISFKLYDTYGFPYEITEELAIEYG 414

Query: 410 LA 411
            +
Sbjct: 415 FS 416



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 82/140 (58%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT   LRFD +H   +T  E+K +ED VN  I   
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITSQRLRFDFSHPCKMTDDEIKKVEDIVNLQIKNK 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM+ EDA+  GA AL G KY D V V  +   DG   S  +CGG HV++T E+ 
Sbjct: 516 LSVKKSIMSLEDALVKGAMALFGEKYEDIVSVYEI---DG--FSIEVCGGPHVNNTSELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E +  +GIRRI AI
Sbjct: 571 TFKIQKEQASSSGIRRIRAI 590


>gi|203287678|ref|YP_002222693.1| alanyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201084898|gb|ACH94472.1| alanyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 592

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 151/422 (35%), Positives = 247/422 (58%), Gaps = 22/422 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +  
Sbjct: 3   LDELRAKYIDFFKSKGHCEIVGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDMLVD 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKELSVEYSFEFLTSPHYLNIS 117

Query: 122 QRRLYITVYDEDEEAFK------LWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           + +LY++V++ D++  +      +W+K+ G+S D+I  ++   NFW  +   GPCGP +E
Sbjct: 118 KDKLYVSVFEGDKDIPRDVKTADIWEKL-GISKDRIFYLSREHNFWGPVGNVGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF D G          +    +Y EIWN VFMQ+ + N      L +  +DTGMG+ER  
Sbjct: 177 IFVDTGIDKCSNTCDITCSCGKYFEIWNNVFMQYNKDNDGNYEELKRKCVDTGMGIERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADG-- 289
           T LQ K++ YD D F+ +I+  E+++G  Y G+N+ +    R+I DH+++S F++AD   
Sbjct: 237 TFLQGKSSVYDTDAFRPIIKQIEKISGKVY-GDNLEDDRAIRIIADHIKASCFILADNFS 295

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y E+ + K  I+ 
Sbjct: 296 VLPSNVGQGYVLRRLIRRSIRYAKKLGMESHCLADLVDSVEDIYKSFYKEITEKKDFIKN 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L  E+E+F KTL  G      ++  L   +++ GD++FKLYDT+G P +I +++    G
Sbjct: 356 ELNIEEEKFFKTLRYGEQEFVKLIHQLSS-KLIPGDISFKLYDTYGFPYEITEELAIEYG 414

Query: 410 LA 411
            +
Sbjct: 415 FS 416



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 82/140 (58%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT   LRFD +H   +T  E+K +ED VN  I   
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITSQRLRFDFSHPCKMTDDEIKKVEDIVNLQIKNK 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM+ EDA+  GA AL G KY D V V  +   DG   S  +CGG HV++T E+ 
Sbjct: 516 LSVKKSIMSLEDALVKGAIALFGEKYEDIVSVYEI---DG--FSIEVCGGPHVNNTSELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E +  +GIRRI AI
Sbjct: 571 TFKIQKEQASSSGIRRIRAI 590


>gi|300214775|gb|ADJ79191.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score =  257 bits (657), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 253/456 (55%), Gaps = 50/456 (10%)

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI---VNHRVIVDHLRSSS 283
           MGLER+ +V Q    N++ DLF  +I+ + ++ TG KY G N    V+ +VI DH R+ +
Sbjct: 1   MGLERVVSVFQHARTNFETDLFLPIIEKTAELSTGKKY-GENAEADVSFKVIADHARAVT 59

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F I DG LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++ 
Sbjct: 60  FAIGDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQ 119

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIM 401
              IE+ ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ 
Sbjct: 120 AEFIEKVIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELT 179

Query: 402 QDILCARGLAGIDIISFNQALEEQR-----SRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           ++     GL  +D   FN+ +E+Q+     +R+ A S+G+ +G        L +    ++
Sbjct: 180 KEYANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL-------LTDITTPSE 231

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           ++GY  L+                     NGV   +K I+   E+V+   +  + +V+FD
Sbjct: 232 YVGYHELKA--------------------NGV---LKDIIIDNELVDTVPADSRAQVIFD 268

Query: 517 QTPFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLV 572
           +TPFYAE GGQ+ D G        +  ++ DVQ    G  +H  HA+ E   +  E +  
Sbjct: 269 KTPFYAEMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKE---MTRENTYS 325

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D     ++  NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +L
Sbjct: 326 LEVDVAFHNKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDL 385

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           K IED VN  I +N+ V T + ++E A   G   L+
Sbjct: 386 KKIEDIVNAKIWENIQVETVVTDKESAEKDGCYCLI 421


>gi|216264058|ref|ZP_03436052.1| alanyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215980102|gb|EEC20924.1| alanyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 594

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSEYLNIS 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           + RLY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDRLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKIKCSINCNVTCSCGKYFEIWNNVFMQYNKDENGNYMELDRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GI 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  G+
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEFISGKIYGQKEDDDRCIRIISDHIKAACFILADSSGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+E+F KTL +G      +  +L    I  GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSTEEEKFFKTLFQGEQEFIKITRNLSSKTI-PGDIAFKLYDTYGFPYELTEELAFEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID   FN+  ++ +  ++
Sbjct: 416 -DIDKSGFNEYFKKHQKTSK 434



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HSK +T  E+K +ED VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVKQKGSNITAERLRFDFVHSKKMTDDEIKKVEDIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY++ V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKSIMELSEAREKGAMALFGEKYDNLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|227872332|ref|ZP_03990686.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
 gi|227841815|gb|EEJ52091.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
          Length = 536

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 198/565 (35%), Positives = 299/565 (52%), Gaps = 44/565 (7%)

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
           +I   +  E++RF KT+D GL +L G+   L K  +++L+G+ AF+LYDT+G PLD+ ++
Sbjct: 1   MILRVISEEEDRFNKTIDNGLAILQGLKEDLQKNGEKLLSGEDAFRLYDTYGFPLDLTKE 60

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +D  +F QA++ QR  ARA          + ++ +L E    T+F+GY+ L
Sbjct: 61  ILEDSGIT-VDEEAFQQAMKVQRETARAARKSTNYMGRDDVYQNL-EASLQTEFVGYEQL 118

Query: 464 RGSKFMKEDRKVLCQKPPIDLT----NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                        C+     L     NG    ++  V+         +G +  V+ D++P
Sbjct: 119 E------------CEGKITALVYLADNGDEDEIRPSVE---------AGNRAAVITDRSP 157

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FY   GGQ GD G  I  G  + I +     + G   H   VE+G      S+ L +D +
Sbjct: 158 FYGTMGGQQGDQG-KICSGTSVFIVEETIHLQGGKLAHLGTVEQGGFSVGDSVRLVVDAK 216

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R   + NH+ATHLL  AL   LGSHV Q G+      LRFD TH   +T  EL+ +E+ 
Sbjct: 217 KRALTARNHTATHLLQKALKETLGSHVEQAGAYYDDKRLRFDFTHFTALTKEELEKVENL 276

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ IA+   V+TR M  E+A  SGA AL G KY D VRVVSV     G  S  LCGGTH
Sbjct: 277 VNEEIARADVVLTREMPIEEAKKSGATALFGEKYGDTVRVVSV-----GDFSIELCGGTH 331

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V ++  I    I+SE  + AG+RRIEAIT Q    +   ++E LKSL+  LK    +++ 
Sbjct: 332 VENSSSIQAFKILSEQGVAAGVRRIEAITSQNLFDYFHHEEELLKSLSGKLKADPEHLLA 391

Query: 759 RVEEIWEEYR--KLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           RVE + +E +  + Q    K KL    VEDL+  +  D + ++  I  +D   L+++ D+
Sbjct: 392 RVESLEKELKESRSQCEQLKAKLANAEVEDLAVVEYKDCSLIATNIPGMDRNALRNLGDS 451

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGGGRPH 873
           L+ K ++  I+L  +  E    +L+    D   +   +A +L +  A +L GGGGGG+P 
Sbjct: 452 LKDKHKNAFILLASV--EDGKPILMATASDGAVKLGAHAGNLIKEIAPIL-GGGGGGKPQ 508

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           MAQ+GG +  K ++A+      +KK
Sbjct: 509 MAQAGGKDSAKLEEALKQSLESMKK 533


>gi|111115044|ref|YP_709662.1| alanyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123145760|sp|Q0SNU2|SYA_BORAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110890318|gb|ABH01486.1| alanyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 594

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSEYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           + RLY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDRLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKIKCSINCNVTCSCGKYFEIWNNVFMQYNKDENGNYMELDRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GI 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  G+
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEFISGKIYGQKEDDDRCIRIISDHIKAACFILADSSGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+E+F KTL +G      +  +L    I  GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSTEEEKFFKTLFQGEQEFIKITRNLSSKTI-PGDIAFKLYDTYGFPYELTEELAFEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID   FN+  ++ +  ++
Sbjct: 416 -DIDKSGFNEYFKKHQKTSK 434



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HSK +T  E+K +ED VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVKQKGSNITAERLRFDFVHSKKMTDDEIKKVEDIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY++ V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKSIMELSEAREKGAMALFGEKYDNLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|227538395|ref|ZP_03968444.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241777|gb|EEI91792.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 291

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/265 (46%), Positives = 170/265 (64%), Gaps = 15/265 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+N   IR  FL FF+   H+++PS+ ++  NDPTLMFTN+GM  FK+ F G+ +P +  
Sbjct: 23  MTN-REIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKHSR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT+ + L
Sbjct: 82  IADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTEVYKL 141

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+ RLY+T+++        +D EA+  WK  S +S D+I+     DNFW M ETGPCGPC
Sbjct: 142 DKDRLYVTIFEGDDSEGLVKDTEAYDFWK--SWISEDRILLGNKKDNFWEMGETGPCGPC 199

Query: 173 SEIFFD-QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI +D + E      PG S    +  + IEIWNLVFMQF +        LP   +DTGM
Sbjct: 200 SEIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGM 259

Query: 229 GLERMATVLQEKTNNYDIDLFKHLI 253
           G ER+   +Q K++NYD D+F+ +I
Sbjct: 260 GFERLVRAIQGKSSNYDTDVFQPMI 284


>gi|51598481|ref|YP_072669.1| alanyl-tRNA synthetase [Borrelia garinii PBi]
 gi|59798511|sp|Q662E4|SYA_BORGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51573052|gb|AAU07077.1| alanyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 594

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+      E  K+W+ + G+  D+I  ++   NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQKIPCDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFIPIIKRIEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T  GS Y EL + K  I++ 
Sbjct: 297 SPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSIETIYGSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSTEEEKFFKTLFQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAFEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID + F++  ++ +  ++
Sbjct: 416 -NIDKVGFDEYFKKHQKTSK 434



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY++ V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|219685840|ref|ZP_03540648.1| alanine--tRNA ligase [Borrelia garinii Far04]
 gi|219672614|gb|EED29645.1| alanine--tRNA ligase [Borrelia garinii Far04]
          Length = 594

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 251/443 (56%), Gaps = 21/443 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LDKLRKKYIDFFKSKKHYEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+  D+I  ++   NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRMEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++    GS Y EL + K  I++ 
Sbjct: 297 SPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYGSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+E+F KTL +G      +  +L    I  GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSTEEEKFFKTLFQGEQEFIKITKNLSSKTI-PGDIAFKLYDTYGFPYEVTEELAFEYGF 415

Query: 411 AGIDIISFNQALEEQRSRARAHS 433
             ID + F++  ++ +  ++  S
Sbjct: 416 -NIDKLGFDEYFKKHQKASKKGS 437



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY++ V V    YE GG  S  +CGG HV +T E+ 
Sbjct: 516 LSVKKSIMELSEAQKKGAMALFGEKYDNLVSV----YEIGGF-SLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|21619898|gb|AAH33169.1| AARS2 protein [Homo sapiens]
          Length = 785

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 218/780 (27%), Positives = 355/780 (45%), Gaps = 92/780 (11%)

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            +NFW M +TGPCGPC+EI +D    + GG+        + +E+WNLVFMQ  ++     
Sbjct: 6   QENFWEMGDTGPCGPCTEIHYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSL 56

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGN 267
             LP+  +DTGMGLER+  VLQ K + YD DLF  L+ A +Q           G+  EG 
Sbjct: 57  QPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGR 116

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLL 326
               +RV+ DH+R+ S  I+DG+ P   G   VLRRI+RRA+ ++  +    P  +  L+
Sbjct: 117 TDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLV 176

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
           P +   +G AYPEL +    I   +  ++  F  +L+RG  ++D  L  LG  ++   +V
Sbjct: 177 PVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEV 236

Query: 387 AF--KLYDTHGLPLDIMQDILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           A+   L    GLPLD+++ +L  +G+    AG++ +    A EE + RAR        G 
Sbjct: 237 AWSLSLCGDLGLPLDMVELMLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG- 291

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGS-KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
              +W  +    G  Q  G      S K+    R         +     + +++   + G
Sbjct: 292 ---LWLDV-HALGELQRQGVPPTDDSPKYNYSLRP----SGSYEFGTCEAQVLQLYTEDG 343

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHA 558
             V     GQ+  ++ D+T FYAE GGQ  D G  +  G    +  V + +  G F+ H 
Sbjct: 344 TAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHE 403

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V    LR    + L +D   R      H+ATHLL+ AL   LG    Q GS + P+ LR
Sbjct: 404 AVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLR 463

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-- 676
            DVT   P+T  +L+++E+ V + + Q+  V       E+   +  A + G +  D V  
Sbjct: 464 LDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYP 518

Query: 677 -------------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                          +    +     S  LC GTH+  TG +  L I+ +  +  G  R+
Sbjct: 519 DPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRL 578

Query: 724 EAITGQRA-RSHLMGQD---------EKL----KSLASFLKVSQ--GNVVGRVE-EIWEE 766
            A+TG++A ++  +GQ          E+L    + +A  L++S+  G ++  VE  +  +
Sbjct: 579 LAVTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQ 638

Query: 767 YRKLQLIH-----------AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKS 811
           +++ +L+            A RKLQ+        ++ + +    +I +  S E    L  
Sbjct: 639 WQRRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVK 698

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           V+  L ++  S  ++L+      K      V +  +  F A   A      +GG   G R
Sbjct: 699 VVRQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 758


>gi|219684565|ref|ZP_03539508.1| alanyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219671927|gb|EED28981.1| alanyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 594

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 251/443 (56%), Gaps = 21/443 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+  D+I  ++   NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++    GS Y EL + K  I++ 
Sbjct: 297 SPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYGSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+E+F KTL +G      +  +L    I  GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSTEEEKFFKTLFQGEQEFIKITKNLSSKTI-PGDIAFKLYDTYGFPYEVTEELAFEYGF 415

Query: 411 AGIDIISFNQALEEQRSRARAHS 433
             ID + F++  ++ +  ++  S
Sbjct: 416 -NIDKLGFDEFFKKHQKASKKGS 437



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY++ V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|298242617|ref|ZP_06966424.1| Alanine--tRNA ligase [Ktedonobacter racemifer DSM 44963]
 gi|297555671|gb|EFH89535.1| Alanine--tRNA ligase [Ktedonobacter racemifer DSM 44963]
          Length = 445

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 154/448 (34%), Positives = 249/448 (55%), Gaps = 42/448 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           S I   +L +F+ +GH  LPS+ L +P N  +  F  +GM P       +  P    +++
Sbjct: 8   SQIVERYLSYFRGHGHYELPSTPLAVPGNSTS--FIIAGMQPLLPYLRAETLPPSPRLSS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQ+C+R     +D++ VG  +R  + F MLGN+S G Y+K  AI++A ++L +  ++++ 
Sbjct: 66  VQRCLRT----DDVEAVGSNDRKMSAFLMLGNWSIGEYWKREAIEMALEVLLQHLEVERE 121

Query: 124 RLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSE 174
           RL++TVY  DE      D+EA   W ++ G+ +++I+ + + DN W+M E  GPCGP SE
Sbjct: 122 RLWVTVYAGDEPLGLPGDDEAISEWLRV-GMPSERIVSLGSEDNLWTMGEGPGPCGPSSE 180

Query: 175 IFFDQG--------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           IF D+G         C PG       + ER++E+WNLVFMQ+E+        LP+ +IDT
Sbjct: 181 IFVDRGMELGCGRATCRPGC------DCERFMEVWNLVFMQYERHADGSLTTLPQRNIDT 234

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGLER+AT+LQ   + +  D+F   ++   ++   + EG      R+IVDH+R+     
Sbjct: 235 GMGLERIATILQGAESVFSTDVFLPALERLRELVP-EQEGEVRRTRRMIVDHMRAVLLAG 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAK 344
              + P  +GR  V+RR++RRA C  R+LG  +P +  LL  L    GS     E  Q +
Sbjct: 294 LVDVRPGRDGRSSVVRRLIRRAACQGRVLGLEQPFLGELLSPLAEGHGSLLMPQEHSQVQ 353

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQ 402
            L+ + + +E+  F + L +GL LL+    H+  +E   ++G V F+L+   G P D+  
Sbjct: 354 GLV-QVVTNEERMFSRVLTQGLSLLE----HVEANERGYVDGRVLFQLHAERGFPADLAA 408

Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR 430
           +IL  RGL+ ID   + QA ++    +R
Sbjct: 409 EILVERGLS-IDWQRYEQARQQHSQVSR 435


>gi|224532246|ref|ZP_03672878.1| alanyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511711|gb|EEF82117.1| alanyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 594

 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 250/440 (56%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LEKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLT-HLTFFEMLGNWSLGAYFKEYSVRCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIYYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLERTV 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFIPIIKRIEFISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYDELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+E+F KTL +G      +  +L   + + G++ FKLYDT+G P ++ +++    G 
Sbjct: 357 LSTEEEKFFKTLFQGEQEFIKITRNL-PSKTIPGNIVFKLYDTYGFPYEVTEELAFEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID + F++  +  +  ++
Sbjct: 416 -NIDKLGFDEYFKNHQKISK 434



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +ED VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEDIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY++ V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKSIMELSEARERGAIALFGEKYDNLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|167957608|ref|ZP_02544682.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 625

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/482 (31%), Positives = 250/482 (51%), Gaps = 54/482 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   IR  +LEF Q+NGH ++  + LI  NDPT +FT SGM P      GQ+ P    + 
Sbjct: 2   NAQEIRQKYLEFCQRNGHAIIERAPLILHNDPTTLFTGSGMQPLLPYLLGQDHPQGTKLA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+RA     D+++VG  NRH TFFEMLGN+S G YFK + I+  ++ LT+   LD 
Sbjct: 62  DSQTCLRA----QDIEDVG-DNRHTTFFEMLGNWSMGEYFKRQQIEWFFEFLTEIVGLDP 116

Query: 123 RRLYITVY--------DEDEEAFKLWKKIS---------------------GLSADKIIR 153
            ++Y++ +          D+EA ++W+++                      G+   +I  
Sbjct: 117 HKIYVSCFIGDDKNNIPRDDEAAQIWQEVFAKKGIKAKIVELDSAENGDKLGMQGGRIFF 176

Query: 154 ITTNDNFWSMAET-------GPCGPCSEIFFDQGE----CIPGGLPGSSEEGERYIEIWN 202
               +N+WS            PCGP SE+F+D GE       G    +S+ G R++EI N
Sbjct: 177 YNDKENWWSRGGGIDSTPIGDPCGPDSEVFYDFGEQHHDASFGQAHPASDSG-RFMEIGN 235

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            VFMQ+ + +      L + ++D G GLER+A    +  + + I L + +I   E ++G 
Sbjct: 236 QVFMQYRRLDDGSFEPLKRKNVDFGGGLERIAAAAIDSPDVFKISLLRPIIDKLESLSGK 295

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
            Y+  +  + RVI DHLR+++FL  DG +P+N+ +GYV+RR++RRA+ Y+  LG  +  +
Sbjct: 296 DYD-THTGSMRVIADHLRAATFLAVDGCVPSNKEQGYVMRRLLRRAIRYSFDLGIEQNFL 354

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             ++P +     + +PE+ + +  I   L  E++ F +TL +GL  +   +     D+ L
Sbjct: 355 EEVVPVIADLYEADFPEVKENREQIIAVLVKEEKAFRQTLRKGLRQMQHYI-----DDGL 409

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGT 440
            G+  F LYDT G P+++  +    +G+   D     F+  + EQR R++    G  SG 
Sbjct: 410 TGEELFTLYDTFGFPVELSTEEAYKQGIKLSDNWRAEFDARMAEQRQRSKTARKGQFSGG 469

Query: 441 TE 442
            E
Sbjct: 470 LE 471



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 7/145 (4%)

Query: 587 HSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           H+ATHLL  AL  +L    + Q+GS IT + LRFD  H K +TS E +++ED VN  I  
Sbjct: 481 HTATHLLGAALRKVLKVPDLQQHGSNITSERLRFDFNHDK-LTSEEKQAVEDQVNAWIDA 539

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPV   +    +A+  GA    G +Y D V+V S+  E   V S  +CGG HV  TG +
Sbjct: 540 DLPVSFAVYPTNEALKMGAIGAFGERYGDEVKVYSIG-EGDNVVSFEVCGGPHVEHTGTL 598

Query: 706 M----LLYIVSESSIRAGIRRIEAI 726
                   I  E S  AGIRRI+A+
Sbjct: 599 AEGGKRFKINKEESSSAGIRRIKAV 623


>gi|3136021|emb|CAA19104.1| alanyl-tRNA synthetase [Mycobacterium leprae]
          Length = 272

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/274 (47%), Positives = 174/274 (63%), Gaps = 19/274 (6%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6   IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATATSIQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF-----DLD 121
           C+R      D+D+VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT  F      LD
Sbjct: 65  CIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADGGYGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
             RL+ TVY +D+EA  LW++I+GL  ++I R    DN+WSM   GPCGP SEI++D+G 
Sbjct: 121 PERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234
           E  P G P  +E  +RY+E+WNLVFMQ E      +++ + R  LP+ +IDTGMG+ER+A
Sbjct: 181 EFGPEGGPIVNE--DRYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMGVERIA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268
            VLQ   N Y+IDL + +I          Y+  N
Sbjct: 239 LVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPEN 272


>gi|225549137|ref|ZP_03770112.1| alanyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225370363|gb|EEG99801.1| alanyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 594

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID + FN+  ++ +  ++
Sbjct: 416 -NIDKLGFNEHFKKHQKTSK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|224534087|ref|ZP_03674670.1| alanyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|224512786|gb|EEF83154.1| alanyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 594

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSIV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID + FN+  ++ +  ++
Sbjct: 416 -NIDKLGFNEHFKKHQKTSK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|216264895|ref|ZP_03436887.1| alanyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215981368|gb|EEC22175.1| alanyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|312148018|gb|ADQ30677.1| alanyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 594

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             ID + FN+  ++ +  ++
Sbjct: 416 -NIDKLGFNEHFKKHQKTSK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|226321195|ref|ZP_03796732.1| alanyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226321538|ref|ZP_03797064.1| alanyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226232727|gb|EEH31480.1| alanyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226233392|gb|EEH32136.1| alanyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 594

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             +D + FN+  ++ +  ++
Sbjct: 416 -NVDKLGFNEHFKKHQKTSK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|195941424|ref|ZP_03086806.1| alanyl-tRNA synthetase [Borrelia burgdorferi 80a]
 gi|221217734|ref|ZP_03589202.1| alanyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|223888838|ref|ZP_03623429.1| alanyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|225550064|ref|ZP_03771024.1| alanyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|221192411|gb|EEE18630.1| alanyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|223885654|gb|EEF56753.1| alanyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|225369176|gb|EEG98629.1| alanyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 594

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSIV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             +D + FN+  ++ +  ++
Sbjct: 416 -NVDKLGFNEHFKKHQKTSK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|15594565|ref|NP_212354.1| alanyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|6707746|sp|O51238|SYA_BORBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2688110|gb|AAC66604.1| alanyl-tRNA synthetase (alaS) [Borrelia burgdorferi B31]
          Length = 594

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             +D + FN+  ++ +  ++
Sbjct: 416 -NVDKLGFNEHFKKHQKTSK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMELSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|224532653|ref|ZP_03673274.1| alanine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224512433|gb|EEF82813.1| alanine--tRNA ligase [Borrelia burgdorferi WI91-23]
          Length = 594

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             +D + FN+  ++ +  ++
Sbjct: 416 -NVDKLGFNEHFKKHQKTSK 434



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LFVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|312149615|gb|ADQ29686.1| alanyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 594

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 251/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             +D + FN+  +  +  ++
Sbjct: 416 -NVDKLGFNEHFKRHQKTSK 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|289677326|ref|ZP_06498216.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 199

 Score =  240 bits (613), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 138/195 (70%), Gaps = 9/195 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGS 190
           FFD G  I GG PGS
Sbjct: 184 FFDHGPEIWGGPPGS 198


>gi|218249169|ref|YP_002374745.1| alanyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|218164357|gb|ACK74418.1| alanyl-tRNA synthetase [Borrelia burgdorferi ZS7]
          Length = 594

 Score =  240 bits (613), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 252/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             +D + F++  ++ +  ++
Sbjct: 416 -NVDKLGFDEHFKKHQKTSK 434



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFIHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMKLSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|225552345|ref|ZP_03773285.1| alanyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371343|gb|EEH00773.1| alanyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 594

 Score =  240 bits (612), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 251/440 (57%), Gaps = 21/440 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +  
Sbjct: 3   LNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDMLVN 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121
           VQKC+R G    D+D VG  + H TFFEMLGN+S G YFKE +++ +++ LT     ++ 
Sbjct: 63  VQKCLRTG----DIDEVGDLS-HLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLNIP 117

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           +  LY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP +E
Sbjct: 118 KDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIHYLSKDHNFWGPVGSKGPCGPDTE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER  
Sbjct: 177 IYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLERTI 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG--I 290
             LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD   +
Sbjct: 237 AFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSSVV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I++ 
Sbjct: 297 FPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIKKE 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    G 
Sbjct: 357 LSKEEEKFFKTLSQGEQEFIKITRNL-PSKTIPGDIAFKLYDTYGFPYEVTEELAIEYGF 415

Query: 411 AGIDIISFNQALEEQRSRAR 430
             +D + FN+  ++ +  ++
Sbjct: 416 -NVDKLGFNEHFKKHQKTSK 434



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN  I  +
Sbjct: 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNS 515

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V   IM   +A   GA AL G KY+D V V  +   DG   S  +CGG HV +T E+ 
Sbjct: 516 LSVKKIIMELSEAREKGAMALFGEKYDDLVSVYEI---DG--FSLEVCGGPHVENTNELG 570

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  +GIRRI+AI
Sbjct: 571 TFKIQKEQSSSSGIRRIKAI 590


>gi|20094336|ref|NP_614183.1| alanyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|19887392|gb|AAM02113.1| Alanyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 918

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 210/819 (25%), Positives = 352/819 (42%), Gaps = 159/819 (19%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKCVR 69
           F  FF+++ HE+L    ++      +  T + +  F+   T G+  P    +   Q C+R
Sbjct: 71  FFRFFERHDHEVLDRYPVVARWRDDIHLTIASIACFQPWVTSGEVPPPANPLVINQPCIR 130

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------YFKERAIQLAWDLLTKEFDLD 121
                ND+DNVGRT RH T F M G+ +F          Y+KE  ++L ++   ++  + 
Sbjct: 131 L----NDIDNVGRTGRHFTLFHMGGHHAFNNHPHDRRDIYWKEETVRLCYEFTVEKLGIP 186

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++          AFK                   +++W     G  GPC E+  D   
Sbjct: 187 EEKI----------AFK-------------------ESWWEGG--GNAGPCFEVVVDG-- 213

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                           +E+  LVFMQ+EQ   + R  LP+  +DTG G+ER A +   + 
Sbjct: 214 ----------------LELATLVFMQYEQVGGEYRE-LPQKIVDTGYGIERYAWITTGEP 256

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN-----------------------NIVNHRV---- 274
             YD  +F  L+ A+ +  G++ +G                         ++ +RV    
Sbjct: 257 TAYDA-VFGDLVDATARDLGVEIDGEAREILGELARVAGLMDVETESDLRVLRNRVARRL 315

Query: 275 -------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                              I+DH R  +F++ DG++P+N G GY+ R ++RRA+     L
Sbjct: 316 DLDVNELVRVAEPVEFVYGILDHARCLAFMLGDGVVPSNAGEGYLARLVIRRALRLLDGL 375

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
                 ++ ++  +  ++   YPEL + +  I++ L  E +R+ + L RG   +   L  
Sbjct: 376 DAEREYLLEVVERVLEDLRGTYPELAEREEYIQDALECEIDRYTRALKRGKKEVRKRLEE 435

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
            G+   L+ +   +LYD+HG+P ++ ++I    G+       F   + E+         G
Sbjct: 436 KGE---LSFEDLVELYDSHGIPPEVAREIAEDEGVEVEVPDDFYSRVAERHEGPEEVEEG 492

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
           L          +++E+   T+   YD  +  +F  E                       +
Sbjct: 493 LEELER----IAVEEELPETELAFYDDEKRLEFKAE-----------------------V 525

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +   E+  +A       VV D+T FY E GGQ  D G         ++ DVQK   G+  
Sbjct: 526 IGTYEVNGDAW------VVLDRTYFYPEGGGQEADRGTMRWKDGEAEVKDVQK-VRGVVF 578

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H   ++  +      +   +D + R +L+ NH+ATH++  A   +LG HV Q G+  + D
Sbjct: 579 HR--IDGDVPPEGAEVECEVDGERRMRLTRNHTATHVILEAARRVLGDHVWQAGAHKSTD 636

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYN 673
             R DVTH + I+  EL+ IE   N+I+ ++LPV  R M+R +A       L   G    
Sbjct: 637 EARLDVTHHRRISDEELREIERLANEIVMKDLPVNKRFMDRNEAERRYGFELYQGGVVPG 696

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +RVV +E    G +  A C GTH  STGEI  + IV    I+ G+ RI    G+ A  
Sbjct: 697 REIRVVEIE----GWNVQA-CAGTHCDSTGEIGPIKIVGRERIQDGVERIRFAAGEAALE 751

Query: 734 HLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRK 769
            +   ++ L+     L+V+  N+   V R  E W+E RK
Sbjct: 752 RIWETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRK 790


>gi|22096191|sp|Q8TWY1|SYA_METKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 915

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 210/819 (25%), Positives = 352/819 (42%), Gaps = 159/819 (19%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKCVR 69
           F  FF+++ HE+L    ++      +  T + +  F+   T G+  P    +   Q C+R
Sbjct: 68  FFRFFERHDHEVLDRYPVVARWRDDIHLTIASIACFQPWVTSGEVPPPANPLVINQPCIR 127

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------YFKERAIQLAWDLLTKEFDLD 121
                ND+DNVGRT RH T F M G+ +F          Y+KE  ++L ++   ++  + 
Sbjct: 128 L----NDIDNVGRTGRHFTLFHMGGHHAFNNHPHDRRDIYWKEETVRLCYEFTVEKLGIP 183

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++          AFK                   +++W     G  GPC E+  D   
Sbjct: 184 EEKI----------AFK-------------------ESWWEGG--GNAGPCFEVVVDG-- 210

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                           +E+  LVFMQ+EQ   + R  LP+  +DTG G+ER A +   + 
Sbjct: 211 ----------------LELATLVFMQYEQVGGEYRE-LPQKIVDTGYGIERYAWITTGEP 253

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN-----------------------NIVNHRV---- 274
             YD  +F  L+ A+ +  G++ +G                         ++ +RV    
Sbjct: 254 TAYDA-VFGDLVDATARDLGVEIDGEAREILGELARVAGLMDVETESDLRVLRNRVARRL 312

Query: 275 -------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                              I+DH R  +F++ DG++P+N G GY+ R ++RRA+     L
Sbjct: 313 DLDVNELVRVAEPVEFVYGILDHARCLAFMLGDGVVPSNAGEGYLARLVIRRALRLLDGL 372

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
                 ++ ++  +  ++   YPEL + +  I++ L  E +R+ + L RG   +   L  
Sbjct: 373 DAEREYLLEVVERVLEDLRGTYPELAEREEYIQDALECEIDRYTRALKRGKKEVRKRLEE 432

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
            G+   L+ +   +LYD+HG+P ++ ++I    G+       F   + E+         G
Sbjct: 433 KGE---LSFEDLVELYDSHGIPPEVAREIAEDEGVEVEVPDDFYSRVAERHEGPEEVEEG 489

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
           L          +++E+   T+   YD  +  +F  E                       +
Sbjct: 490 LEELER----IAVEEELPETELAFYDDEKRLEFKAE-----------------------V 522

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +   E+  +A       VV D+T FY E GGQ  D G         ++ DVQK   G+  
Sbjct: 523 IGTYEVNGDAW------VVLDRTYFYPEGGGQEADRGTMRWKDGEAEVKDVQK-VRGVVF 575

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H   ++  +      +   +D + R +L+ NH+ATH++  A   +LG HV Q G+  + D
Sbjct: 576 HR--IDGDVPPEGAEVECEVDGERRMRLTRNHTATHVILEAARRVLGDHVWQAGAHKSTD 633

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYN 673
             R DVTH + I+  EL+ IE   N+I+ ++LPV  R M+R +A       L   G    
Sbjct: 634 EARLDVTHHRRISDEELREIERLANEIVMKDLPVNKRFMDRNEAERRYGFELYQGGVVPG 693

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +RVV +E    G +  A C GTH  STGEI  + IV    I+ G+ RI    G+ A  
Sbjct: 694 REIRVVEIE----GWNVQA-CAGTHCDSTGEIGPIKIVGRERIQDGVERIRFAAGEAALE 748

Query: 734 HLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRK 769
            +   ++ L+     L+V+  N+   V R  E W+E RK
Sbjct: 749 RIWETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRK 787


>gi|242011581|ref|XP_002426527.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510653|gb|EEB13789.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 809

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 212/829 (25%), Positives = 366/829 (44%), Gaps = 129/829 (15%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G  +P    V   QKC+R GGKHNDL  VG    HH+FFEMLGN+SFG YF
Sbjct: 1   MNQFKDVFLGLTRPAATKVANYQKCIRVGGKHNDLSQVGNDGSHHSFFEMLGNWSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRI 154
           K+ A +++W+LLT  ++L   RLY+T +  DE        E  ++W++I G+  + I+  
Sbjct: 61  KKEACKMSWNLLTDVYNLQPERLYVTYFGGDESLGLGPDLEVREIWREI-GIKENHILPF 119

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG-------ERYIEIWNLVFMQ 207
            + DNFW M   GPCG C+EI +D        +PG  + G       +   E+WN+VFMQ
Sbjct: 120 GSKDNFWEMGTIGPCGVCTEIHYDH-------VPGRKDVGNFVNADRDDVTELWNIVFMQ 172

Query: 208 FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG 266
           + +    E   L K  +DTGMG ER+   LQ KT+NYD DLF  L +   + +    Y G
Sbjct: 173 YNRNENNELVKLGKHFVDTGMGFERLVATLQGKTSNYDTDLFLPLFEGIRKYSKHGGYTG 232

Query: 267 NNIV------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM-CYARLLGYTE 319
              V      ++R+I DH R  S  ++DG+LP ++ +   +R I+R+A+    +      
Sbjct: 233 TYDVRDSIDSSYRIIADHGRMISVALSDGMLPNHQNK---VRTIIRKALRVSKKSFNCDS 289

Query: 320 PLMMHLLPALCTEMGSAYPE----LIQAKLLIEE------------------------TL 351
            L+ ++   +   +  AYP+    L +   +IE+                         +
Sbjct: 290 GLLKNVTNYVAETLEDAYPQIGKHLSKIHFIIEQEEKIFKEQQNVALKKFKKYKNIFPKI 349

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++ED      L  GL L    +   G+ ++L+ DV + LYDT+GL  +        + L+
Sbjct: 350 KNEDIEDNPNLISGLELFKKYIKD-GRKKLLDEDV-WILYDTYGLSPE------NTKKLS 401

Query: 412 GIDIISFNQALEEQRSRARAHSLG----------------LGSGTTEKIWFSLKEKYGAT 455
            I  + F+++  E     +  +                  + S T +    +   +    
Sbjct: 402 QILGLDFDESSYENYENNKKKNEMKKLEKKIYDEKHEGDVIESKTQQNFNMADDVELTTK 461

Query: 456 QFIGYDL-LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ---QGEIVEEAVSGQKV 511
            +  Y+  + GS     D+ +   +P        +S++  I+      +I     +G ++
Sbjct: 462 DYFKYEYRIDGS-----DKYLFLNQP--------TSVLAIIINGKYHDKISINDFNGNEI 508

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            +V D+T  ++    +  D G  I D   I   +  V K   G+ VH+    +     EM
Sbjct: 509 GLVLDKTQLFSAEKNRNSDLGYLIFDNNDILFDVKKVCKFGNGV-VHYGSFTKYPRNAEM 567

Query: 570 SL----VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
            +    +L ++   R  L  NH+  +LL   +         +N S + PD    D+   K
Sbjct: 568 GIHDTGILILNENVRLNLMKNHTCLNLLKGGIREKFPLTCEKN-SMVNPDSFTLDLMVYK 626

Query: 626 -PITSAELKSIEDNVNDIIAQNLPVVTRIMNR-------EDAIASGAAALLGTKYNDRVR 677
                 ++  +E+ V  +I  ++ V  + +N        E+       +L+ ++      
Sbjct: 627 FKFALNDILDLENFVRKMIKGDVSVNRKPLNHLQFYYLWENIYFKPGISLIESE------ 680

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---RSH 734
           +  +E  +G      +C G HV  T  +    I+    I  G+ R+E +TG  A   R +
Sbjct: 681 IPLIEINNGFTLIREVCNGAHVLRTSHLEDFTILKLKKISYGVHRMEGLTGIHAKQIREN 740

Query: 735 LMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            +  D+K K L   + K    + + ++ +I +E   ++L +  +   LN
Sbjct: 741 DLKMDKKWKILKGQMEKDIVSDNLKKITDIMDEINSMELSYVTKCKLLN 789


>gi|258655273|ref|YP_003204429.1| alanine--tRNA ligase [Nakamurella multipartita DSM 44233]
 gi|258558498|gb|ACV81440.1| Alanine--tRNA ligase [Nakamurella multipartita DSM 44233]
          Length = 465

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/472 (32%), Positives = 245/472 (51%), Gaps = 54/472 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  +L+F  + GH ++P + LIP +DPT +FT SGM P      G + P    +T
Sbjct: 2   DADDIRRIYLDFMVERGHVVIPRAPLIPRDDPTTLFTGSGMQPLLPYLLGADHPAGTRLT 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+RA     D+D VG  NRH TFFEMLGN+S G YFK   +   W+ LT    LD 
Sbjct: 62  DSQTCLRA----QDIDEVG-DNRHTTFFEMLGNWSLGDYFKAEQLPQVWEFLTDRVGLDP 116

Query: 123 RRLYITVYD--------EDEEAFKLWKKI---SGLSADKI-----------------IRI 154
            R+Y++ +         +D E+  +W ++   +G+SAD++                 I  
Sbjct: 117 NRIYVSCFSGDPEHGIAKDTESAAIWTRLFTAAGVSADQVDLDTEEHGGEVGNQGARIAF 176

Query: 155 TTNDNFW-------SMAETGPCGPCSEIF--FDQGECIP--GGLPGSSEEGERYIEIWNL 203
             + N+W        M    P GP SE+F  F Q E  P  G     + +  RY+EI N 
Sbjct: 177 YGSKNWWCRGGHAQDMPVGEPGGPDSEMFYLFPQIEHDPAYGAHCHQNCDCGRYLEIGNS 236

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           VFM++  + +     LP+ ++D G GL R+A    +  + + I+L   ++   E+++G  
Sbjct: 237 VFMEY-VRTETGFAPLPRRNVDFGGGLARIAAASIDSPDVFRINLLWPIVAKLEELSGRS 295

Query: 264 YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
           Y+  + V  RVI DHLR ++FL  DG+ P+N+ +GYV+RR++RRA+ YA  LG  +    
Sbjct: 296 YD-TDTVAMRVIADHLRGATFLAVDGVRPSNKEQGYVMRRLIRRAIRYAFDLGLQQNFFA 354

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            ++P +       YPE+ Q    +   L  E++ F +TL++G+  L G    +G  E+  
Sbjct: 355 EIIPTVSGMYTQDYPEVAQRAESVVGVLVKEEKAFRRTLNKGIKQLRGYKDGIGGAEL-- 412

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHS 433
               F LYDT G P+++  +   A+G+A  +     F++ + EQR+R++A +
Sbjct: 413 ----FVLYDTFGFPVELSTEEARAKGIALAENWRADFDEKMAEQRARSQAAT 460


>gi|15668744|ref|NP_247543.1| alanyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2500963|sp|Q57984|SYA_METJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1591270|gb|AAB98556.1| alanyl-tRNA synthetase (alaS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 892

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 245/949 (25%), Positives = 415/949 (43%), Gaps = 186/949 (19%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F+ FF+++GHE +  + +      D  L+   S  V    I  G  KP    +   Q C+
Sbjct: 66  FINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWITKGIVKPKANPLVIAQPCI 125

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   K+  +D++
Sbjct: 126 RL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF-KKLGIDEK 180

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                                         IT  +++W     G  GPC E+       I
Sbjct: 181 S-----------------------------ITFIESWWEGG--GNAGPCYEV-------I 202

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G           +E+  LVFMQ+E+   N +E   +P   +DTG G+ER       + 
Sbjct: 203 THG-----------VELATLVFMQYEKVGDNYKE---IPLKIVDTGYGIERFVWASTGEP 248

Query: 242 NNYDIDLFKHLIQASEQVTGMK-----------------------------YEGNNIVNH 272
             YD  +FK+++   ++  G+K                              E  N VN 
Sbjct: 249 TIYDA-IFKNIVNKLKEDAGVKDIDKEILAKITEVAGLMDVKDVGDLRKLREEVANKVNI 307

Query: 273 RV---------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
            V               IVDH R+ +F++ DGI+P+N   GY++R ++R+ + +   L  
Sbjct: 308 PVEELDKLISPYEDIYAIVDHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRHMDRLNL 367

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
           + P+   ++     E+   YPEL+  +  I E L  E  ++ +T++RG  +++ +L    
Sbjct: 368 STPI-TEIVAMQLNELKDLYPELLDMEDYIMEILEIETNKYRQTIERGKGIVERLLKSKK 426

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           + ++ N     +LYD+HGLP +I++D+  + G       +F   + E+    +       
Sbjct: 427 EIDLEN---LIELYDSHGLPPEIVKDVAKSLGKDVKIPDNFYTIVAERHENKKE------ 477

Query: 438 SGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
               EKI   L E     T+ + Y+  +  +F   + K+L                    
Sbjct: 478 --VKEKI--KLPEVNVDKTELLFYEYPKMKEF---EAKIL-------------------- 510

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
               IV++ V       + D+T FY E GGQ  DTG  I    + ++ DVQK  E   V+
Sbjct: 511 ---RIVDDYV-------ILDRTAFYPEGGGQKADTGYIIKGDKKFRVVDVQK--ENNIVY 558

Query: 557 HAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H I        E  +V   ID++ R  L  NH+ATH+++ A   +LG HV Q GS +  D
Sbjct: 559 HKIENLNDELKEGDIVKGVIDWKRRLSLMRNHTATHIINAAAQKVLGRHVWQAGSDVDVD 618

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYN 673
             R D+TH K I+  ELK IE   N+I+  N  + +  M+R +A       +   G    
Sbjct: 619 KARLDITHYKRISREELKDIERVANEIVLNNYNIKSIFMDRNEAEEKFGFRIYQGGVVPG 678

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +R+V +E E+G +     CGGTH  +TGE+  + I+    ++ G+ R+   +G  A  
Sbjct: 679 NVLRIVIIEDENGNIVDVQACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGLSALK 738

Query: 734 HLMGQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +   ++ L+  A  L+        V+ R  E W+E RK      K+  +L   +L  +K
Sbjct: 739 AVQEMEDILEESAEILRCPTEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFEL-INK 797

Query: 791 IADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
              +     ++ +V++  KE+ ++ D L    ++ I++L+      K ++L    E++  
Sbjct: 798 FETIGNYKVLVEKVEANPKEMLNIADNLA--TENAIVVLLN----DKGNILCKRGENVDI 851

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + N  +L R  AK      GGGR H+AQ  G      ++    V  F+K
Sbjct: 852 KMN--ELIRYIAK------GGGREHLAQ--GKYEGDVEEIKKKVIEFIK 890


>gi|329737456|gb|EGG73710.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 265

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 120/269 (44%), Positives = 162/269 (60%), Gaps = 25/269 (9%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +   
Sbjct: 7   SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   ++ 
Sbjct: 67  QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180
            +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+G  
Sbjct: 123 EKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSA 179

Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
                   E  PGG      E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           M ++ Q    NY+ DLF  +I+  E V+G
Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSG 262


>gi|284799808|ref|ZP_06390350.1| alanine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284796867|gb|EFC52214.1| alanine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 624

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 178/529 (33%), Positives = 268/529 (50%), Gaps = 59/529 (11%)

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI--ISFNQALEEQRSRARAHSLGLGS 438
           ++ G+  FKLYDT+G P D+  D+  AR L GID+    F + +E QR+RARA       
Sbjct: 137 VIGGEHIFKLYDTYGFPYDLTADM--AREL-GIDLDEAGFEREMEAQRARARAAQ----- 188

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
             + K    L  +   T+F GY           +R+               S V A+ + 
Sbjct: 189 --SFKANAQLPYEGQDTEFKGYS----------ERQT-------------ESKVLALYKD 223

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GE V E   G +  VV D TPFYAE+GGQ+GD G       R ++ D QK    +F    
Sbjct: 224 GEQVNELNEGDEGAVVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFGQFG 283

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +   G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +  R
Sbjct: 284 VQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGEHVEQKGSLVTAESTR 343

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD++H + +T+ E+  +E  VN+ I  N+ V   IM+ EDA  +GA  L G KY D VRV
Sbjct: 344 FDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSMEDAQKTGAMMLFGEKYGDEVRV 403

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +     G  S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A      Q
Sbjct: 404 LQM-----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQ 458

Query: 739 DEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLS 787
           +  +K + +  K  ++ +V+ +++      + L+           +HA  KL  + +DL 
Sbjct: 459 EHLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLG 518

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             K+      +   +      L+ ++  L  K +  I++L  ++ + K S+   V++ L 
Sbjct: 519 SAKLVAAQIEADAAA------LREIVTDLTGKSEQAIVLLAAVN-DGKVSLCAGVSKPLT 571

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +  A DL + +A+ + GG GGGRP +AQ+GG +  K    I  V  ++
Sbjct: 572 GKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDAEKLPAMIESVKDWV 619



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 32/44 (72%)

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
           MG AYPEL + +  I E LR+E+ RFG+TL++G+ L + VL+ +
Sbjct: 1   MGDAYPELKEKQTQIMEALRAEESRFGETLEKGMGLFNQVLNGM 44


>gi|261402487|ref|YP_003246711.1| alanyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261369480|gb|ACX72229.1| alanyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 895

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 238/932 (25%), Positives = 407/932 (43%), Gaps = 189/932 (20%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F+ FF+++GHE +  + +      D  L+   S  V    I  G  KP    +   Q C+
Sbjct: 66  FINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWITKGIVKPKANPLVIAQPCI 125

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   K+  +D++
Sbjct: 126 RL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF-KKLGIDEK 180

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                                         IT  +++W     G  GPC E+       I
Sbjct: 181 S-----------------------------ITFIESWWEGG--GNAGPCYEV-------I 202

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G           +E+  LVFMQ+E+   N +E   +P   +DTG G+ER       + 
Sbjct: 203 THG-----------VELATLVFMQYEKVGDNYKE---IPLKIVDTGYGIERFVWASTGEP 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI-----------------------------VNH 272
             YD  +FK+++   ++  G+K     I                             VN 
Sbjct: 249 TIYDA-IFKNIVNKLKEDAGVKDIDKEILAKITEVAGLMDVKDVGDLRKLREEVAKKVNI 307

Query: 273 RV---------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +V               I DH R+ +F++ DGI+P+N   GY++R ++R+ + +   L  
Sbjct: 308 QVEDLDKLISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRHMDRLNL 367

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
           + P+   ++     E+   YPEL+  +  I E L  E++++ +T++RG  +++ +L +  
Sbjct: 368 STPIT-EIVAMQLNELKDLYPELLDMEDYIMEILELEEDKYRQTIERGKGIVERLLKNKK 426

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             ++ N     +LYD+HGLP +I++D+                          A SLG  
Sbjct: 427 DIDLEN---LIELYDSHGLPPEIVKDV--------------------------AKSLGKD 457

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
               +  +  + E++              K +KE  K+    P +D+ +    +     +
Sbjct: 458 VKIPDNFYTIVAERH-----------ENKKEVKEKIKL----PEVDV-DKTELLFYEYPK 501

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             E   + +      V+ D+T FY E GGQ  DTG  I    + ++ DVQK  E   V+H
Sbjct: 502 MKEFEAKVLKVADDYVILDKTAFYPEGGGQKADTGYIIKGDKKFRVIDVQK--ENNIVYH 559

Query: 558 AIVERGI------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I   G+      L+    +   ID+  R  L  NH+ATH+++ A   +LG H+ Q GS 
Sbjct: 560 KI--EGLNDDINELKEGDIVKGVIDWDRRLSLMRNHTATHVINAAAQKVLGRHIWQAGSD 617

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  D  R D+TH K I+  ELK IE   N+I+  N  V +  M+R +A       +   G
Sbjct: 618 VDVDKARLDITHYKRISREELKEIERVANEIVLNNYNVKSIFMDRNEAEEKFGFRIYQGG 677

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + +R+V +E E+G +     CGGTH  +TGEI  + I+    ++ G+ R+   +G 
Sbjct: 678 VVPGNVLRIVIIEDENGNIVDVQACGGTHCQNTGEIGFIKIIKTERVQDGVERLIYSSGL 737

Query: 730 RARSHLMGQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            A   +   ++ L+  A  L+        V+ R  E W+E RK      K+  +L   +L
Sbjct: 738 SALKAVQEMEDILEESAEILRCPSEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFEL 797

Query: 787 SCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             +K   V     ++ +V++  KE+ ++ D L    ++ I++L+      K ++L    E
Sbjct: 798 -MNKFERVGNYKVLVEKVEANPKEMLNIADNLA--TENTIVVLLN----DKGNILCKRGE 850

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++  + N  +L R  AK      GGGR H+AQ
Sbjct: 851 NVDIKMN--ELIRYIAK------GGGREHLAQ 874


>gi|1136561|gb|AAA84420.1| AlaRS A [Caenorhabditis elegans]
          Length = 272

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/270 (45%), Positives = 171/270 (63%), Gaps = 20/270 (7%)

Query: 5   SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57
           S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P      +
Sbjct: 7   SEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAKL 66

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +AV T QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT  
Sbjct: 67  KRAVNT-QKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTTV 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY++V+  DE        EA  +W+ + G+  ++I+     DNFW M + GPC
Sbjct: 126 YGIPAERLYVSVFGGDEANGVPADSEARDIWRSV-GVPDERILNFGMKDNFWEMGDVGPC 184

Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           GPCSEI +D+ G      L  + +     +EIWNLVF+QF ++       LP   ID G+
Sbjct: 185 GPCSEIHYDRIGNRDASHLVNADD--PMVVEIWNLVFIQFNREEGGVLKPLPAKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           GLER+  V+Q+KT+NYD D+F+ + +A  Q
Sbjct: 243 GLERLIAVMQDKTSNYDTDIFQPIFEAIHQ 272


>gi|289191823|ref|YP_003457764.1| alanyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938273|gb|ADC69028.1| alanyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 892

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 236/925 (25%), Positives = 396/925 (42%), Gaps = 178/925 (19%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F+ FF+++GHE +  + +      D  L+   S  V    +  G  KP    +   Q C+
Sbjct: 66  FINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWVTKGIVKPKANPLVIAQPCI 125

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   K+  +D++
Sbjct: 126 RL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF-KKLGIDEK 180

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                                         IT  +++W     G  GPC E+       I
Sbjct: 181 S-----------------------------ITFIESWWEGG--GNAGPCYEV-------I 202

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G           +E+  LVFMQ+E+     + I P   +DTG G+ER       +   
Sbjct: 203 THG-----------VELATLVFMQYEKVGDSYKEI-PLKIVDTGYGIERFVWASTGEPTI 250

Query: 244 YDI----------------DLFKHLIQASEQVTGM------------KYEGNNIVNHRV- 274
           YD                 D+ K ++    +V G+            + E    VN  V 
Sbjct: 251 YDAIFKNIVNKLKDDAGVEDIDKEILAKITEVAGLMDVKDVGDLRKLREEVAKKVNIPVD 310

Query: 275 --------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP 320
                         I DH R+ +F++ DGI+P+N   GY++R ++R+ + +   L  + P
Sbjct: 311 ELDKLISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRHMDRLNLSIP 370

Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380
           +   ++     EM   YPEL+  +  I E L  E  ++ +T++RG     G++  L K +
Sbjct: 371 IT-EIVAMQLNEMRDLYPELLDMEDYIMEILEIETNKYRQTIERG----KGIVERLLKSK 425

Query: 381 -ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
             ++ D   +LYD+HGLP +I++D+                          A SLG    
Sbjct: 426 KSIDLDNLIELYDSHGLPPEIVKDV--------------------------AKSLGKDIS 459

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             +  +  + E++                 KE+ K   + P +D+      +     +  
Sbjct: 460 IPDNFYTIVAERHEN---------------KEEVKEKVKLPEVDVEK-TELLFYKYPKMK 503

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + +      V+ D+T FY E GGQ  DTG  I    + ++ DVQK  E   V+H I
Sbjct: 504 EFEAKILKVVNDYVILDKTAFYPEGGGQKADTGYIIKGDKKFRVIDVQK--ENDIVYHKI 561

Query: 560 VE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L+   ++   ID+  R  L  NH+ATH+++ A   +LG HV Q GS +  D  R
Sbjct: 562 ENLDNELKEGDTVKGVIDWDRRLSLMRNHTATHIINAAAQKVLGKHVWQAGSDVDVDKAR 621

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRV 676
            D+TH K I+  ELK IE   N+I+  N  V +  M+R +A       +   G    + +
Sbjct: 622 LDITHYKRISREELKEIERVANEIVLNNYNVKSVFMDRNEAEEKFGFRIYQGGVVPGNIL 681

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R+V +E E+G +     CGGTH  +TGE+  + I+    ++ G+ R+   +G  A   + 
Sbjct: 682 RIVIIEDENGNIVDVEACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGLSALKAVQ 741

Query: 737 GQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             ++ L+  A  L+        V+ R  E W+E RK      K+  +L   +L  +K   
Sbjct: 742 EMEDTLEESAEILRCPTEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFEL-MNKFET 800

Query: 794 VNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           +     ++ +V++  KE+ ++ D L    ++ I++L+      K ++L    E +    N
Sbjct: 801 IGNYKVLVEKVEANPKEMLNIADNLAN--ENAIVVLLN----DKDNILCKRGESV--DIN 852

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQ 876
             +L R  AK      GGGR H+AQ
Sbjct: 853 MAELIRYIAK------GGGREHLAQ 871


>gi|325973162|ref|YP_004250226.1| alanyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323651764|gb|ADX97846.1| alanyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 445

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 244/451 (54%), Gaps = 28/451 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           + ++ T++ +F  NGHE++P  SLIP   D + +F N+G+   K +F    +KP  Q  T
Sbjct: 7   AKLKETWINYFSSNGHEVIPPHSLIPPEYDKSTLFVNAGLGAIKKLFIESSDKP--QMFT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++QK VR      D+ ++   + H T+FEM+GNFS GGYFK  AI  A + L     +D+
Sbjct: 65  SIQKVVRTV----DITSIEEDSWHSTYFEMMGNFSIGGYFKREAIGYAVEFLLSLLKIDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL IT+Y++D E+  +WK++ G +   I+++    NFW + E GPCGPC+EI++D+GE 
Sbjct: 121 NRLVITIYEKDSESESIWKELLGENTP-ILKL-GKANFWEIGE-GPCGPCTEIYYDRGEK 177

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L       +RYIEIWN+VF QF  +N  E   L + +IDTG GLER+ T++
Sbjct: 178 YDKNNLGVELIKQGINNDRYIEIWNIVFSQFWAKN-GEYEELKRKNIDTGAGLERVITII 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNH-RVIVDHLRSSSFLIADGILP 292
           +E  N +    F  LI+  E+++G  Y    E + +  H ++I DH+R+ + ++ +GILP
Sbjct: 237 EEAENIFHSSCFSPLIKEVEKLSGKSYYLASEDSPLKAHFQIISDHIRTLTLIVGEGILP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPL--MMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +N+GRGYV+++++RR      +LG +  L  +  LL      +   +  L + +  I+E 
Sbjct: 297 SNKGRGYVVKKLLRRVATSLNILGVSNCLEALSSLLDISVELLSPLHSFLSEQQKNIKEI 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + +E + F K L+        +   +   E    +  F L +  G P  +++ IL  + +
Sbjct: 357 VMAEYQSFEKVLNN---FYKKIFKEIENPENNLEERLFTLVEREGAPFALIEKILVEKEI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
                  FN+  E  +++++      G   T
Sbjct: 414 -NFSREKFNELYENHKNKSKNAKFSSGFDLT 443


>gi|256810754|ref|YP_003128123.1| alanyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793954|gb|ACV24623.1| alanyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 892

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 239/926 (25%), Positives = 399/926 (43%), Gaps = 180/926 (19%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F++FF+++GH  +  + +      D  L+   S  V    +  G  +P    +   Q C+
Sbjct: 66  FIDFFKEHGHTPIKRAPVTARRWRDDILLTIASIAVFQPWVTKGIVEPKANPLVITQPCI 125

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++          +
Sbjct: 126 RL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF--------K 173

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL I     DE++                 IT  +++W     G  GPC E+       I
Sbjct: 174 RLGI-----DEKS-----------------ITFIESWWEGG--GNAGPCYEV-------I 202

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G           +E+  LVFMQ+E+     + I P   +DTG G++R       +   
Sbjct: 203 THG-----------VELTTLVFMQYEKIGDTYKEI-PLKIVDTGYGIDRFVWASTGEPTI 250

Query: 244 YDIDLFKHLIQASEQVTGMK-----------------------------YEGNNIVNHRV 274
           YD  +FK+++   ++  G+K                              E  N VN  V
Sbjct: 251 YDA-IFKNIVNKLKEDAGVKGIDKEILAKITEVAGLMDVKDVGDLRKLREEVANKVNIPV 309

Query: 275 ---------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE 319
                          I DH R+ +F++ DGI+P+N   GY++R ++R+ + +   L  + 
Sbjct: 310 EELDELISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRHMDRLNLSM 369

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
           P+   ++     E+   YPEL+  +  I E L  E +++ +T++RG     G++  L K 
Sbjct: 370 PIT-EIVAMQLKELRDLYPELLDMEDYIMEILDIETKKYRQTIERG----KGIVERLLKS 424

Query: 380 E-ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
           +  L  D   +LYD+HGLP +I++D+                          A SLG   
Sbjct: 425 KKALELDDLIELYDSHGLPPEIVKDV--------------------------AKSLGKEV 458

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
              +  +  + E++                 KE+ K   + P +D+      +     + 
Sbjct: 459 NIPDNFYTIVAERHEN---------------KEETKEEFKLPEVDVEK-TELLFYEYPKM 502

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +      V+ D+T FY E GGQ  DTG  I    + ++ DVQK  E   V+H 
Sbjct: 503 KEFEAKILKVVNDYVILDKTAFYPEGGGQKADTGYLIKGDKKYRVIDVQK--ENNIVYHK 560

Query: 559 IVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           I        E  +V   ID+  R  L  NH+ATH+++ A   +LG HV Q GS +  D  
Sbjct: 561 IENLDDELKEGDVVRGVIDWDRRLSLMRNHTATHIINAAAQKVLGKHVWQAGSDVDVDKA 620

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDR 675
           R D+TH K I+  ELK IE   N+II  N  V +  M+R +A       +   G    + 
Sbjct: 621 RLDITHYKRISREELKEIERIANEIILSNYNVKSVFMDRNEAEEKFGFRIYQGGVVPGNV 680

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R+V +E EDG +     CGGTH  +TGE+  + I+    ++ G+ R+   +G  A   +
Sbjct: 681 LRIVIIEDEDGNIVDVEACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGLSALKAV 740

Query: 736 MGQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHK 790
              ++ L+  A  L+        V+ R  E W+E RK      K+  +L   +L      
Sbjct: 741 QEMEDILEESAEILRCPAEELPKVINRFFEEWKEQRKKIEELEKKIGELKKFELMNKFET 800

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           + D   +   + E + KE+ ++ D L    ++ I++L+     +K ++L    E++  R 
Sbjct: 801 VGDYKVLVEKV-EANPKEMLNIADNLA--TENAIVVLLN----EKGNILCKRGENVDIRM 853

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +  +L +  AK      GGGR H+AQ
Sbjct: 854 D--ELIKYVAK------GGGREHLAQ 871


>gi|325989605|ref|YP_004249304.1| Alanyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323574690|emb|CBZ40346.1| Alanyl-tRNA synthetase [Mycoplasma suis]
          Length = 445

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 242/451 (53%), Gaps = 28/451 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           + ++ T++ +F  NGHE++P  SLIP   D + +F N+G+   K +F    +KP  Q  T
Sbjct: 7   AKLKETWINYFSSNGHEVIPPHSLIPPEYDKSTLFVNAGLGAIKKLFIESSDKP--QMFT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++QK VR      D+ ++   + H T+FEM+GNFS GGYFK  AI  A + L     +D+
Sbjct: 65  SIQKVVRTV----DITSIEEDSWHSTYFEMMGNFSIGGYFKREAISYAVEFLLSLLKIDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL IT+Y++D E+  +WK++ G +   I+++    NFW + E GPCGPC+EI++D+GE 
Sbjct: 121 SRLVITIYEKDSESESIWKELLGENTP-ILKL-GKANFWEIGE-GPCGPCTEIYYDRGEK 177

Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L       +RYIEIWN+VF QF  +N  E   L + +IDTG GLER+ T++
Sbjct: 178 YDKNNLGVELIKQGINNDRYIEIWNIVFSQFWAKN-GEYEELKRKNIDTGAGLERVITII 236

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNH-RVIVDHLRSSSFLIADGILP 292
           +E  N +    F  LI+  E+++G  Y    E + +  H ++I DH+R+ + ++ +GILP
Sbjct: 237 EEAENIFHSSCFSPLIKEVEKLSGKSYYLASEDSPLKAHFQIISDHIRTLTLIVGEGILP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPL--MMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +N+GRGYV+++++RR      +LG    L  +  LL      +   +  L + K  I++ 
Sbjct: 297 SNKGRGYVVKKLLRRVATSLNILGVPSCLEALSSLLNISVELLSPLHSFLSEQKENIKKV 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E + F K L+        +   +   E    +  F L +  G P  +++ IL  + +
Sbjct: 357 VLGEYQSFEKVLNN---FYKKIFKEIENPENNLEERLFTLVEREGAPFALIEKILVEKEI 413

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
                  FN+  E  +++++      G   T
Sbjct: 414 -NFSREKFNELYENHKNKSKNAKFSSGFDLT 443


>gi|15679677|ref|NP_276794.1| alanyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334347|sp|O27718|SYA_METTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2622813|gb|AAB86155.1| alanyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 898

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 243/946 (25%), Positives = 395/946 (41%), Gaps = 173/946 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  I+  F+EFF + GHE +    ++       +    + +  F+   T G  KP    
Sbjct: 55  DLYEIQDKFMEFFAERGHEPIRRYPVLAKRWRDDVFLVGASIYNFQPWVTSGLVKPPANP 114

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M G+ +F       Y++E  I+   D LT
Sbjct: 115 LVVAQPSIRL----NDVDNVGRTGRHLTCFTMGGHHAFNSEDNTVYWEEETIKYCHDFLT 170

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                        G+   +I  I   +++W     G  GPC E+
Sbjct: 171 H---------------------------IGIDPSEITFI---ESWWQGG--GNEGPCYEV 198

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C+ G            +E+  LVF+Q+       R  +P   +DTG GLER A 
Sbjct: 199 ------CVRG------------VELATLVFIQYRTLPDGGREEIPLKIVDTGYGLERFAW 240

Query: 236 VLQEKTNNYD---------------IDLFKHLIQASEQVTGM----KYEGNNIVNHRV-- 274
           + Q     YD               + + + ++  + QV GM     Y     +  RV  
Sbjct: 241 ISQGTPTAYDACLGPVIEKLVELTGVKIDEEILAENAQVAGMMDIETYADLRELRKRVAD 300

Query: 275 ---------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                I DH R  +F++ADG++P+N   GY+ R I+RR +   +
Sbjct: 301 KLGISVEELERAAAPMESVYAIADHTRCLAFMLADGVIPSNVKEGYLARLIIRRTLRLMK 360

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            LG  E L   ++      +   YPE+      I   +  E+ R+ +T+ RG  +++  +
Sbjct: 361 DLGMKESLK-DIMNIQVEFLEGHYPEIRSHHEHILNIIDLEEHRYARTVKRGRRIVEKTI 419

Query: 374 SHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            +L +D    +  ++  KLYD+HG+P + + +I    G   + I      L  +R+    
Sbjct: 420 KYLKRDGKAEMPLEILIKLYDSHGIPPETIGEIAEESGFQ-VKIPDNFYTLVAERNETE- 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                    TE     +   Y AT+ + YD                   P DL       
Sbjct: 478 ---------TEMPEEDVHLDYPATELLFYD------------------EPDDL------- 503

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                   E   E +   +  ++ D+T FY E GGQ  DTG    +G RL+I   +K   
Sbjct: 504 --------EFQAEVIGIHENGLILDRTLFYPEGGGQPSDTGYITAEGCRLRIKHAEKI-- 553

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G  V H   +   +    ++   ID   R QL+ NH+ATHL+  A   +LG H+ Q G+ 
Sbjct: 554 GAVVVHRTDDEICIEPGTTIRGFIDSDRRLQLTRNHTATHLIVSAARKVLGDHIWQAGAQ 613

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
                 R D++H + IT  EL+ IE   N+ +  N+P+  R M+R+ A       L   G
Sbjct: 614 KGVKSSRLDLSHYRRITLEELQEIERLANEYVMMNVPLKVRWMDRDLAERKYGFILYQGG 673

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                R+RVV +     GV   A C GTHV  TG+I L+ I     I+ G+ RIE   G 
Sbjct: 674 VVPGSRIRVVEIP----GVDVQA-CAGTHVHRTGDIGLIRINRTERIQDGVERIEFSAGS 728

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   +    + L+  +   KV+   + G  E  + E++ L+  +   +L+  V  L   
Sbjct: 729 AAIEIMQKTGDILRESSDIFKVTPSQLPGTCERFFTEWKALR--NEVSRLKEKVASLKIL 786

Query: 790 KIAD----VNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           ++ D    +N ++ II  VD+   E+K++   L   + + ++         +  ++   +
Sbjct: 787 EMKDRAERINDLTVIIDTVDADMDEMKNMALELSATVDAVVL------ANPEGKIVGAAS 840

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ED +     ++     A  + GGGGGGRPH+AQ  GP  +K D+A+
Sbjct: 841 EDAVKAGLRINEVISQAAAVLGGGGGGRPHLAQGAGPATDKVDEAL 886


>gi|297519240|ref|ZP_06937626.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 316

 Score =  230 bits (586), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 198/350 (56%), Gaps = 37/350 (10%)

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+  
Sbjct: 4   VEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCR 62

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            R +  +D   F  A+EEQR RAR  S G G+     I         A++F GYD L   
Sbjct: 63  ERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-- 113

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GG
Sbjct: 114 ---------------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGG 152

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +N
Sbjct: 153 QVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLN 211

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +N
Sbjct: 212 HSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRN 271

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           LP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGG
Sbjct: 272 LPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGG 316


>gi|223986204|ref|ZP_03636222.1| hypothetical protein HOLDEFILI_03532 [Holdemania filiformis DSM
           12042]
 gi|223961818|gb|EEF66312.1| hypothetical protein HOLDEFILI_03532 [Holdemania filiformis DSM
           12042]
          Length = 397

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/395 (37%), Positives = 214/395 (54%), Gaps = 20/395 (5%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D++ FYAE+GGQ+ D G    D    ++ DV+K     F+HH  V  G+L+  M L
Sbjct: 13  EVILDRSCFYAESGGQVADGGTMSCDEADCEVLDVKKAPHKQFMHHVKVVDGVLKEGMKL 72

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D Q R +   NHS  HL+  AL  I+G H++Q GS +  D  RFD TH + ++  +
Sbjct: 73  QLQVDVQRRIRTMANHSCVHLMQSALKKIVGDHIAQAGSYVCQDYARFDFTHFEKVSDQQ 132

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           LK +E  VND +    PV T +M  E+A  SGA AL   KY D VRVVS+     G  S 
Sbjct: 133 LKEVEALVNDFVMAKFPVHTEVMAIEEAKHSGAIALFDEKYGDEVRVVSM-----GEVSK 187

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LC GTHV +T +I +  IVSE SI +GIRRI A TG  A    + + + LK++A+ LK+
Sbjct: 188 ELCAGTHVHNTQDIGVFKIVSEESIGSGIRRITAKTGYAAYQEFVSEQDVLKTIAAQLKM 247

Query: 752 SQGNVVG-RVEEIWEEYRKLQLIHAKRKLQLN-------VEDLSCH--KIADVNFMSHII 801
           +  N V  +V  + EE   L+    K   QLN        +D+  H   +  +N +   +
Sbjct: 248 NSLNGVSEKVAGVLEENAALK----KEIGQLNQKMMVFKADDMVNHAEAVNGLNIILEKV 303

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S +D + +K++ + L+ K +   I L   S+ K   V     E +     A D  +++A+
Sbjct: 304 SGLDGQAMKNLAETLRNKCEKSFIFLANPSEGKVTYVCACSKEAIAKGIKAGDFVKMAAQ 363

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +  G GGGRP MAQSGG +G+K D+  A + S L
Sbjct: 364 -MSQGNGGGRPDMAQSGGKDGSKVDEVFALIRSKL 397


>gi|2656129|gb|AAC46017.1| alanine tRNA synthetase [Pseudomonas aeruginosa PAO1]
          Length = 183

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 104/180 (57%), Positives = 129/180 (71%), Gaps = 9/180 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   TT 
Sbjct: 4   AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPC+EI
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183


>gi|157813836|gb|ABV81663.1| putative AATS-ALA protein [Triops longicaudatus]
          Length = 314

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 124/319 (38%), Positives = 184/319 (57%), Gaps = 26/319 (8%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKIS 144
           LGN+SFG YFK+     AW+LLT+ F L + RLY+T +          DEE  ++W  + 
Sbjct: 1   LGNWSFGDYFKKEVCTWAWELLTEVFKLPKDRLYVTYFGGHPETGLQSDEECRQIWLSL- 59

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIW 201
           GL +++I+  +  DNFW M ETGPCGPCSEI FD+     GG   +   + +    +EIW
Sbjct: 60  GLPSERILPGSMKDNFWEMGETGPCGPCSEIHFDR----IGGRDAAHLVNMDDPDVLEIW 115

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           NLVFM F ++       LPK  ID GMG ER+ +V+Q+K +NYD DLF  +  A ++ TG
Sbjct: 116 NLVFMTFNRETDSSLKPLPKRHIDCGMGFERLVSVIQDKRSNYDTDLFAPIFAAIQKGTG 175

Query: 262 MKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
            K     +         + +RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA
Sbjct: 176 AKPYSGKVGKEDADGVDMAYRVLADHARTLTIALSDGGRPDNVGRGYVLRRILRRGVRYA 235

Query: 313 RLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
                 +P     L+P +   +G  +PE+ +   L+ + +  E+ +F KTL+RG  LL+ 
Sbjct: 236 TEKMQAKPGFFASLVPTVVEVLGDTFPEVTRDPELVMDIINDEEAQFLKTLNRGRSLLER 295

Query: 372 VLSHLGKDEILNGDVAFKL 390
            ++ LG  + L GD+A++L
Sbjct: 296 TIAKLGNQKTLPGDIAWRL 314


>gi|284030737|ref|YP_003380668.1| Alanine--tRNA ligase [Kribbella flavida DSM 17836]
 gi|283810030|gb|ADB31869.1| Alanine--tRNA ligase [Kribbella flavida DSM 17836]
          Length = 387

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 141/402 (35%), Positives = 222/402 (55%), Gaps = 30/402 (7%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
           TF++FF ++GH     SSLIP     ++FT SGM P      G+  P+ + +  VQ+C+R
Sbjct: 6   TFVDFFTRHGHVPTTGSSLIPRPGDPVLFTTSGMHPLTPYLEGEPHPLGRRLVGVQRCLR 65

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
                 DLD VG    H T FEMLG++S G Y  E+ ++  + LLT+ F +D  +LY+TV
Sbjct: 66  T----TDLDEVGDPT-HLTVFEMLGSWSLGDYGSEQTLRWGYQLLTERFGIDPGQLYVTV 120

Query: 130 Y------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +      + D+E+ + W+ + GL     I +TT+DN+WS   TGPCGP SEIF   G   
Sbjct: 121 FGGDGQVELDQESLRTWQSL-GLP----IELTTDDNWWSNGPTGPCGPDSEIFVWTGGGS 175

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P G P + +   R++E+WN V M++ + +      L + +IDTG+GLER+  VL+ K + 
Sbjct: 176 PEGTPTTDK---RWVEVWNHVMMRYRRLDDGSLEPLRQRNIDTGLGLERLTMVLEGKQSV 232

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y+  LF+  +    ++  +  +     + R+++DHLRSS  ++ DG+ P+N GRGYVLRR
Sbjct: 233 YETSLFEPWMTTVPRLWTLDEQ-----SERIVIDHLRSSIVIVGDGVHPSNTGRGYVLRR 287

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RRA+    L    E   +  LP    +    +    +   L+   L  E+ RF   L+
Sbjct: 288 LIRRALTI--LWREDESRSLSELPIELFQQTLDHFHQGELVTLVRRILIDEEIRFTNLLE 345

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           RG      VLSH    + L+ +    L++THGLP +++  +L
Sbjct: 346 RG----RKVLSHDRFRKTLDQNDFDYLHETHGLPQELVVSLL 383


>gi|268323634|emb|CBH37222.1| alanyl-tRNA synthetase [uncultured archaeon]
          Length = 919

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 254/959 (26%), Positives = 416/959 (43%), Gaps = 174/959 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V  IR +FL FF+ +GH  L    ++      +    + +  F+   T G+  P    +
Sbjct: 58  SVEQIRESFLSFFESHGHTRLKRYPVVARWRDDIYLNIASISNFQPFVTAGKVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q C+R      DL+++G+T RH T FEM+G+ +F    K    +     +  + D  
Sbjct: 118 VISQPCIRL----EDLESIGKTGRHLTAFEMMGHHAFN---KRGEEREETGEIYWKND-- 168

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
                 TV   DE   +L   + G        +T  +  W     G  GPC E+      
Sbjct: 169 ------TVRYCDEYLRQLGVDMDG--------VTYKEAPWVGG--GNAGPCLEV------ 206

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQ-------NKQERFILPKMSIDTGMGLERMA 234
            I  GL           E+  LVFM  +         N Q    +    +DTG GLER  
Sbjct: 207 -ITSGL-----------ELATLVFMDLKLSPRGQIHINGQRYDKMDTYIVDTGYGLERFV 254

Query: 235 TVLQEKTNNYDI---DLFKHLIQASEQVTGMKYEGNNIV-NHRV---------------- 274
              +     YD    D+ K LI A+  V  ++     I+ N R+                
Sbjct: 255 WASKGSPTVYDAIFPDMIKELINAAGIVHPLETHHELIIENARLSGAMSRREIAKRFGIS 314

Query: 275 ----------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                           + DH +  +F++ADGI+P+N   GY+ R ++RRA    + L   
Sbjct: 315 PEELKNILGPIESVYAVSDHTKCLAFMLADGIVPSNAKEGYLARLVLRRAFRILKSLDIA 374

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
            PL   +L  + T + +++PEL ++   I E +  E  R+  TL +G      ++  L K
Sbjct: 375 IPLEELVLKQIKT-LKNSFPELEESVDRIVEIVALEKRRYDDTLLKG----GRIVKQLAK 429

Query: 379 DEILNG-----DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL------EEQRS 427
              L       D    LYDTHGLP + + ++   +G+A +DI     +L      EEQ++
Sbjct: 430 QSKLKAQKIHLDRLINLYDTHGLPPEFVSEVASTQGVA-VDIPENFYSLVASMHGEEQKT 488

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
                         E +   LKEK                                 T  
Sbjct: 489 ------------ALEPLLDGLKEK---------------------------------TQS 503

Query: 488 VSSIVKAIVQQGEIVE-EAVSGQKVE--VVFDQTPFYAEAGGQLGDTGC-AIGDGIR-LQ 542
           + + +K   ++    E EAV     +  V+ D+T F+ E GGQ  DTG   + +  R L+
Sbjct: 504 IPATLKLYYEEPSAFEFEAVVLDTFDDFVILDKTLFFPEGGGQPADTGSLKLKEENRTLK 563

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTIL 601
           + DVQ+  EG+ +H   +E G   ++ S+V   ID + R   + +HSATH++  A   +L
Sbjct: 564 VQDVQE-VEGVILHK--IENGGGISKGSVVSGHIDRERRIAHTRHHSATHIVVCAARKVL 620

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           GSHV Q G+       R DVTH K IT AE K IE   N ++ ++  +  R  +RE+A  
Sbjct: 621 GSHVWQAGAQKGEKRARIDVTHFKRITDAERKEIELLANRMVMEDKEIQARFEDREEAEQ 680

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +   G      +R+V +  ED  V +   C GTH + TGE+  + I+    I+ G
Sbjct: 681 KYKFQIYQGGVPPGKEIRIVRIG-EDEDVQA---CAGTHCTKTGEVGPIKILRTERIQDG 736

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK- 778
           I RIE   G+ A   +  Q+E +K  A+ LKV    +   VE  +EE+++L+  + + + 
Sbjct: 737 IVRIEYSAGEAAVVAVQAQEELIKVAAATLKVPPEKLPHTVERFFEEWKQLKKENERLRG 796

Query: 779 ----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
               LQ+ +       ++ V  ++ ++ + D+K++  +   L    + G + L+   + K
Sbjct: 797 EIATLQIGLLKDHAKDVSGVRVIAEVLPDADTKDMMKIASQL---TEDGFLTLLISERGK 853

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA-IAGV 892
           +ASV+  V + L    +A +L +   +VL GG GGG+  +AQ GG      ++A +AG+
Sbjct: 854 RASVVSSVPKHLKAEISASELVKRVCEVL-GGSGGGKAEIAQGGGEKVEMVEEAMVAGI 911


>gi|150401051|ref|YP_001324817.1| alanyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|189082108|sp|A6UUN3|SYA_META3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150013754|gb|ABR56205.1| alanyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 910

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 248/942 (26%), Positives = 409/942 (43%), Gaps = 193/942 (20%)

Query: 11  FLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQK 66
           FL FF KNGH  +   P S+    +D  ++ T + +  F+   T G  KPV   +   Q 
Sbjct: 68  FLNFFDKNGHTPIKRYPVSARRWRDD--ILLTIASIAVFQPWVTKGIVKPVANPLVIAQP 125

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLD 121
           C+R     ND+DNVGRT RH T F M G+ +F       Y+ +R ++L ++  T      
Sbjct: 126 CIRL----NDIDNVGRTGRHMTCFTMGGHHAFNTDEDFKYWTDRTVELCYNFFTN----- 176

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
                                I G S      IT  +++W     G  GPC E+      
Sbjct: 177 -------------------LGIDGSS------ITFIESWWEGG--GNAGPCYEV------ 203

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            I  G           +E+  LVFMQ+E+  + +   +P   +DTG GLER     +   
Sbjct: 204 -ITHG-----------VELATLVFMQYEKTEQGDYIEMPLKIVDTGYGLERFVWASKGTP 251

Query: 242 NNYDI------------------DLFKHLIQASEQVTG-MKYEG---------------- 266
             Y+                   D+   ++  S  + G M  E                 
Sbjct: 252 TVYEAVFGDIIGKLMDDANINMNDIGPKILAESATLAGLMDIENVGDLRILRQKVAEKLN 311

Query: 267 ----------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                     + I N   I DH R  +F++ DGI+P+N   GY+ R ++R+ + Y + +G
Sbjct: 312 LDVNELDSILSPIENIYAIADHTRCLAFMLGDGIVPSNVKDGYLARLLVRKTLRYIKNVG 371

Query: 317 YTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
            +  L +  + A+  E +   YPEL+  K  I + L  E+ ++ +T+ +G   ++ +   
Sbjct: 372 LS--LSLKDIVAMQLENLKEIYPELMDMKEYIMDVLEEEENKYIQTITKGKGAVERIAK- 428

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDIL---------CARGLAGIDII---SFNQALE 423
             KDEI   D+  +LYD+ GLP ++++DI+           +G   I I    +F   + 
Sbjct: 429 -SKDEITLDDL-IELYDSKGLPPEVVRDIVEEINKKGSKNNKGNKTIKITVPDNFYTIVA 486

Query: 424 EQRSRARAHSLG-LGSGTTEKIWFSLK-EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           E+    +  S    G  T EK   S+  +    T+ + Y     + + KE          
Sbjct: 487 ERHEEKKEDSKSEKGENTAEKSTISINLDDIPETELLFY----SNPYQKEVE-------- 534

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  + I+K I   G +V           + D+T FY E GGQ  D G  IG+    
Sbjct: 535 -------AKILKII---GNVV-----------ILDKTVFYPEGGGQKYDIGL-IGNK--- 569

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           +I  VQK   GI V H +     L  E +++  ++++NR  L  NH+ATH+++ A S +L
Sbjct: 570 KIISVQKNNNGI-VCHTVENTDGLNEEDTIIAKLNWENRLNLMRNHTATHIINAAASKVL 628

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q GS +  +  R D+TH K IT  E+K IE   N I+   +PV + +M R +A  
Sbjct: 629 GKHIWQTGSNVESNKARLDITHYKRITREEIKEIEKIANQIVLDAIPVKSTVMGRNEAEQ 688

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +   G    + +R++ +E    GV   A CGGTH  +T E+  + I+    I+ G
Sbjct: 689 KYGFKIYQGGVVPGNILRILDIE----GVDVEA-CGGTHCQNTSEVGYIKILKTERIQDG 743

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAK 776
           + R+E  +G  + + +   ++ L + +S + V   N+   V R  E W+E +K+     K
Sbjct: 744 VERLEYTSGINSVNEVSLMEDILLNASSIVGVPCENLPKTVNRFFEEWKEQKKIIEELHK 803

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +  +L   +L+  K   V     ++ +V+   KEL S+ D L  +  + I++L+  S   
Sbjct: 804 KIGELEKGNLN-DKFEKVGKYDLLVEKVEGAPKELMSIADNLVNEKDNSIVILLNNS--- 859

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
              +L    E +      + +  L  K+     GGG+  MAQ
Sbjct: 860 -GYILCKCGEKV-----EIKMGELLRKI---AKGGGKDKMAQ 892


>gi|116753969|ref|YP_843087.1| alanyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694533|sp|A0B6X3|SYA_METTP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116665420|gb|ABK14447.1| alanyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 913

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 250/970 (25%), Positives = 408/970 (42%), Gaps = 194/970 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            + S+R  +L FF+ +GH  +    ++      +  T + +  F+   T GQ  P    +
Sbjct: 59  ELDSMREHYLSFFEAHGHTRVQRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGR+ RH T FEM+ +  F       Y+K+R ++L  +LL  
Sbjct: 119 TISQPCIRL----DDLDSVGRSGRHLTTFEMMAHHVFNTKEHEIYWKDRTVELCDELLL- 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                       GL  D    IT  ++ W  A  G  GP  E+ 
Sbjct: 174 ----------------------------GLGVDPE-SITYKESPW--AGGGNAGPSLEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                   GGL           E+  LVFM     +  E  I       +    +DTG G
Sbjct: 203 V-------GGL-----------ELATLVFMNLRLDSSGEYVIKGERYSRMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY------------------------- 264
           LER     +     YD  +F  +++    + G+++                         
Sbjct: 245 LERFVWASKGSPTIYDA-VFPDIVRELSDLAGVEHDLHDPEYAEIFARNARLAGMIDLGE 303

Query: 265 -----------EGNNIVNHRV------------IVDHLRSSSFLIADGILPANEGRGYVL 301
                      E  N    R+            I DH R  ++++ DGI+P+N   GY+ 
Sbjct: 304 ASLRDLRKRIAESINTTPERLERIMAPMERIYAIADHTRCLAYMLGDGIIPSNVKAGYLA 363

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA---YPELIQAKLLIEETLRSEDERF 358
           R ++RR +   + L    PL      +   EM  +   Y +  +    I E L  E+ER+
Sbjct: 364 RLVIRRTLRMMKDLKLEIPL------SEIVEMQISKLDYDDWRERMETISEILSLEEERY 417

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAF----KLYDTHGLPLDIMQDILCARGLAGID 414
            +TL++G  ++  + SH  K     G +       LYDTHG+P +I ++     G  G+D
Sbjct: 418 AETLEKGSRMVSKIASHYSKK---GGRIPLTELVSLYDTHGIPPEIARETA---GALGVD 471

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +                                L + +       Y ++  +    E R+
Sbjct: 472 V-------------------------------ELPDNF-------YSIVASTHSRAEQRE 493

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V  + PP + T  +        +    V     G    VV D+T FY E GGQ  D G  
Sbjct: 494 VETRSPPFEKTERLFYYRPFDQEFDATVLGIFEGS---VVLDRTLFYPEGGGQPADRGVL 550

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + DG    + DVQ   +G+ +H   VE+  L     +   ID + R   + +H+ATH+++
Sbjct: 551 VRDGQVFNVNDVQM-IDGVVLHR--VEQEGLSPGDRVTGRIDMRRRMAHARHHTATHIVN 607

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            +   +LG HV Q G+  + D  R D++H + I+  ELK+IE   N  + + +PV+T  M
Sbjct: 608 DSAKRVLGRHVWQAGAQKSEDRARLDISHYRRISDEELKAIELEANRRVMEMIPVITEFM 667

Query: 655 NREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            RE+A       L   G      +RVV V     G    A C GTHV++TG I  + I+ 
Sbjct: 668 PREEAERLFGFQLYQGGVPPGREIRVVRV-----GSDIEA-CAGTHVTNTGMIGPIKILR 721

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
              ++ G+ RIE   G+ A   +  +D+ L   AS L+V    +   V   +EE++  Q 
Sbjct: 722 TERVQDGVERIEFAAGEAAVQRIQERDDILAEAASILRVPIEQLPRTVFRFFEEWKDQQK 781

Query: 773 I--HAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +  H K ++  + +  LS   + DVN +S +  ++   + ++++ A     +  I  ++G
Sbjct: 782 VIEHLKEEIAGIRILTLSSEAV-DVNGVSIVARDMGESDGETLLKAATMLSERDITAILG 840

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    A +++ V    L+R  NA D+ R +AK + GGGGGG+P +AQ GGPN      A
Sbjct: 841 GASGGAAKIVVSVGRSGLERGLNAADIVRAAAKYI-GGGGGGKPDLAQGGGPNVGGLRAA 899

Query: 889 I-AGVASFLK 897
           I AG+++  K
Sbjct: 900 IDAGMSAARK 909


>gi|304314036|ref|YP_003849183.1| alanyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587495|gb|ADL57870.1| alanyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 898

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 245/956 (25%), Positives = 404/956 (42%), Gaps = 177/956 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  I+  F+EFF + GHE +    ++       +    + +  F+   T G  KP    
Sbjct: 55  DLYEIQDEFIEFFAERGHEPIRRYPVLAKRWRDDVFLVGASIYNFQPWVTSGLVKPPANP 114

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M G+ +F       Y++E  I+   + LT
Sbjct: 115 LVVAQPSIRL----NDVDNVGRTGRHLTCFTMGGHHAFNSEDNTVYWEEETIKYCHEFLT 170

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                     +I +     + F+               IT  +++W     G  GPC E+
Sbjct: 171 ----------HIGI-----DPFE---------------ITFIESWWQGG--GNEGPCYEV 198

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C+ G            +E+  LVF+Q+       R  +P   +DTG GLER A 
Sbjct: 199 ------CVRG------------VELATLVFIQYRTLPDGGREEIPLKIVDTGYGLERFAW 240

Query: 236 VLQEKTNNYD---------------IDLFKHLIQASEQVTGM----KYEGNNIVNHRV-- 274
           + Q     YD               +++ + ++  + +V GM     Y     +  RV  
Sbjct: 241 ISQGTPTAYDACFGPVIEKLIELTGVEVNEEILAENARVAGMMDIETYADLRELRKRVAD 300

Query: 275 ---------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                I DH R  +F++ADG++P+N   GY+ R I+RR +   +
Sbjct: 301 KLGISATELERAAAPMESIYAIADHTRCLAFMLADGVIPSNVKEGYLARLIIRRTLRLMK 360

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            LG  E L   ++      +   YPE+ +    I   +  E+ R+ KT+ RG  +++  +
Sbjct: 361 ELGMRESLK-DIMNIQVEFLEGHYPEIREHHEHILSIIDLEEHRYAKTVTRGRRIVEKTI 419

Query: 374 SHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            +L KD    +  ++  KLYD+HG+P + +++I    G +     +F   + E       
Sbjct: 420 KYLRKDNKSEMPLEILIKLYDSHGIPPETIKEIAEESGFSVKIPDNFYTLVAE------- 472

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +    TE     L   Y  T+ + Y+   G +F                     + 
Sbjct: 473 ----MNEAETEAPEEDLHLDYPQTELLFYEQPDGLEF--------------------EAS 508

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  + + G             V+ D+T FY E GGQ  DTG    DG R++I   +K   
Sbjct: 509 VLGVYEDG-------------VILDRTLFYPEGGGQPSDTGYIESDGCRIRIKHAEKI-- 553

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G  V H   +   L+   ++   ID   R QL+ NH+ATHL+  A   +LG H+ Q G+ 
Sbjct: 554 GNVVLHRTDDEICLKPGETVRGRIDSDRRLQLTRNHTATHLIVAAARRVLGDHIWQAGAQ 613

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
                 R D++H + IT  EL  IE   N+ + +N+P+  R M+R+ A       L   G
Sbjct: 614 KGVKSSRIDLSHYRRITQEELDEIERLANEYVMRNIPLDVRWMDRDIAEKRYGFILYQGG 673

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +     GV   A C GTHV  TG+I L+ I     I+ G+ RIE   G 
Sbjct: 674 VVPGSMIRVVEIP----GVDVQA-CAGTHVKRTGDIGLIMINRTERIQDGVERIEFSAGA 728

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ------LNV 783
            A   +    + L+  A   KV+   +    E  + E++ L+   ++ K +      L V
Sbjct: 729 SAIELMQKNRDILRESADVFKVTPSQLPRTSERFFTEWKALRNEVSRLKEEMASLKILEV 788

Query: 784 EDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            D    ++ D+N +  II   E D  E+K++  AL+    +  ++L       +  ++  
Sbjct: 789 RD----RVEDLNGLRVIIDTVEADMDEMKNM--ALELTESADAVILAN----SEGQIVGA 838

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            ++D + R   ++    SA  + GGGGGG+PH+AQ  G   +K  +A+    S L+
Sbjct: 839 ASDDAVKRGLRINEVIASAARVLGGGGGGKPHLAQGAGKGKDKIHEALEEARSSLE 894


>gi|289581575|ref|YP_003480041.1| alanyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531128|gb|ADD05479.1| alanyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 926

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 247/984 (25%), Positives = 412/984 (41%), Gaps = 210/984 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           N+S +R  FL FF+ + HE +   P ++    +D  ++ T + +  F+ + T G+  P  
Sbjct: 61  NLSEMREQFLSFFEAHDHERIDPYPVAANRWRDD--VLLTQASIYDFQPLVTSGETPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG----------------YF 102
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F                  Y+
Sbjct: 119 NPLTVSQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNAREDLDDPEQYAYQGEVYW 174

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162
           K+R ++L  +                                G+  +++I I   ++ W 
Sbjct: 175 KDRTVELCDEFFDS---------------------------MGVDLEEVIYI---EDPWV 204

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------- 215
               G  GP  E+ +                  R +E+  LVFM  EQ  + E       
Sbjct: 205 GG--GNAGPAIEVIY------------------RGVELATLVFMSMEQDTEGEYEMKDGN 244

Query: 216 RFI-LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHR 273
           R+  +    +DTG GLER   V Q     Y+  ++  +I+  +   G+++ E    + HR
Sbjct: 245 RYTPMDTYIVDTGYGLERWTWVSQGTPTVYEA-VYPDMIEFLKDNAGIEHTEDEEALIHR 303

Query: 274 V---------------------------------------------IVDHLRSSSFLIAD 288
                                                         I DH R+ ++++ D
Sbjct: 304 AAKLAGHMDIDEAEDMETARGEIATELAVDAAELESLMEPLEDIYAIADHCRTLAYMLGD 363

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GI+P+N G GY+ R ++RR       +G   PL          +M +   E  + +  I 
Sbjct: 364 GIVPSNVGTGYLARMVLRRTKRLCDTVGVDAPL------DELVDMQADRLEY-ENRDTIR 416

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           + +R+E E++ +TL+RG   ++ +   H    E +  D   +LYD+HGL  D++++I   
Sbjct: 417 DIVRTEVEKYRETLERGSRRVESLAEEHAETGEPIPTDELIELYDSHGLQPDMVEEIAAE 476

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G A +D+     +L  +R      +      T E+ +  L E    T+ + YD  + ++
Sbjct: 477 AG-ADVDVPDDFYSLVAERHDTPEAAEKTTDETDER-FADLPE----TETLYYDDQQRTQ 530

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F                        +A+V     V E  SG   ++V DQT FY E GGQ
Sbjct: 531 F------------------------EAVVLD---VFERESG--YDIVLDQTMFYPEGGGQ 561

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             DTG    D   +++ DVQ++ +G+ +H    + G  + E  +   +D   RRQL  +H
Sbjct: 562 PADTGTLSTDDATVEVRDVQRE-DGVILHRTDDKLG--KGEF-VNGQLDATRRRQLMRHH 617

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATH++ HA   +LG HV Q G+    D  R D+ H   I+  ++K+IE   ND++ +N 
Sbjct: 618 TATHIVIHAARQVLGEHVRQAGAQKGVDSSRIDLRHYDRISREDVKTIERVANDLVMENT 677

Query: 648 PVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            V     +R DA +     L   G    +++R++ V            CGGTHV+ TG+I
Sbjct: 678 SVSQEWPDRHDAESDHGFDLYQGGIPPGEQIRLIHV------ADDVQACGGTHVNRTGDI 731

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I++   ++ G+ RI    G  A       ++ L   A  L VS   V    E  +E
Sbjct: 732 GSIKILTTERVQDGVERITFAAGDAALESTQENEDALYEAAEILDVSPEEVPDTAERFFE 791

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK------ 819
           E++      A+ K    +EDL+    A          E D  E  +++D L         
Sbjct: 792 EWK------ARGK---QIEDLTEELAAARAGGGGSGEEYDVGETTAIVDRLDADMDELRA 842

Query: 820 -----IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
                +  G I ++G S E  A+ ++ V +D+      V +  L+A+V GGGGG   P  
Sbjct: 843 TASAIVDEGSIAVLG-SGESGATFVVAVPDDVGVNAGEV-VGELAARVGGGGGGP--PDF 898

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GGPN    D A+A     L++
Sbjct: 899 AQGGGPNTEDLDDALADAPDVLRQ 922


>gi|303243766|ref|ZP_07330107.1| alanyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302486008|gb|EFL48931.1| alanyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 905

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 218/889 (24%), Positives = 402/889 (45%), Gaps = 177/889 (19%)

Query: 11  FLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQK 66
           FL+FF++NGH  +   P ++    ND  ++ T + +  F+   T G  +PV   +   Q 
Sbjct: 68  FLKFFEENGHTPIKRHPVTARRWRND--ILLTIASIAVFQPWVTKGIVEPVANPLVIAQP 125

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLD 121
           C+R     ND+DNVGRT RH T F M G+ +F       Y+ +R ++L ++ + K+  +D
Sbjct: 126 CIRL----NDIDNVGRTGRHLTCFTMGGHHAFNKVNDFKYWTDRTVELCFNFM-KKLGID 180

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           ++                              IT  +++W     G  GPC E+      
Sbjct: 181 EKS-----------------------------ITFIESWWEGG--GNAGPCYEV------ 203

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            I  G           +E+  LVFMQ+E+   + +  +P   +DTG G+ER     Q   
Sbjct: 204 -ITHG-----------VELATLVFMQYEKIGNEYKE-MPLKVVDTGYGIERFVWASQGTP 250

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN-------------------NIVNHRV-------- 274
             YD  +F ++++  ++  G+ Y  N                   N+ + R+        
Sbjct: 251 TVYDA-IFGNIVKKLKENAGIDYIENIDERILAESATLAGLMDIENVGDLRILRQKVAEK 309

Query: 275 --------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                               I DH R  +F+  DGI+P+N   GY+ R ++R+ + Y + 
Sbjct: 310 LKMNVDELDKLLTPLENIYAIADHTRCLAFMFGDGIVPSNVKDGYLARLLVRKTLRYMKN 369

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           +G T PL   ++     E+   YPEL++ +  + + +  E+ ++ +T+++G  +++ ++ 
Sbjct: 370 VGITMPLK-EIINLQLEELKELYPELLEMRDYMMDVVDEEERKYLQTINKGRGIVERLVK 428

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
              K+EI   D+  +LYD+ GLP ++++           DI+S    +  + +     S 
Sbjct: 429 --SKNEITLDDL-IELYDSKGLPPEVVK-----------DIVS---EINSKSNTQNKKSG 471

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF----MKED---RKVLCQKPPIDLTNG 487
            +     +  +  + E++   +    D L   K     + ED    ++L  K P      
Sbjct: 472 NIKLNIPDNFYTIVAERHEQKKTEESDELNSQKKALPELNEDIEKTELLFYKNP------ 525

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
                    +Q E   + +      ++ D+T FY E GGQ  D G   G     ++ +VQ
Sbjct: 526 ---------KQKEFEGKILKIIDNYIILDKTIFYPEGGGQKYDIGTINGK----KVIEVQ 572

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           KK +   V+H + +   L     +   ID+ +R  L  NH+ATH+++ A   +LG H+ Q
Sbjct: 573 KKDD--IVYHKLSDVNGLNEGDVVKGVIDWNHRINLMRNHTATHIINAAAQRVLGKHIWQ 630

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS + P+  R D+TH K I+  E+K IE   N+I+  N+PV +  M+R +A       +
Sbjct: 631 TGSNVEPNKARLDITHYKRISRDEIKEIERIANEIVLNNIPVKSTFMSRNEAEQKYGFRI 690

Query: 668 L--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              G    + +R++++E    G+   A CGGTH  +TGE+  + I+    I+ G+ R+E 
Sbjct: 691 YQGGVVPGNVLRIINIE----GIDVEA-CGGTHCENTGEVGYIKILKTERIQDGVERLEY 745

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            +G  +   +   ++ L + +  L V   N+   V+  +EE+++ + I    +LQ  + +
Sbjct: 746 TSGINSVMEVSAMEDILINSSEILGVPIENLPKTVKRFFEEWKEQKKII--EELQKKIGE 803

Query: 786 LSCHKIAD----VNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLV 828
              +++A+    V     ++ +V+   KEL S+ D L K  +  I++L+
Sbjct: 804 YKKYELANKFEKVGNYDILVEQVEGNPKELMSIADNLIK--EGSIVVLL 850


>gi|88601358|ref|YP_501536.1| alanyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121722713|sp|Q2FQD6|SYA_METHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88186820|gb|ABD39817.1| alanyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 916

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 258/967 (26%), Positives = 402/967 (41%), Gaps = 185/967 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V  +R  +L FF+K GH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  TVDEMREAYLSFFEKQGHTRIDRYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+R ++L   LLT 
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTCFEMMAHHAFNSDEKEIYWKDRTVELCDQLLTS 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                        L A+K + +T  ++ W     G  GP  E+ 
Sbjct: 174 -----------------------------LGANKEM-VTYKEHPWIGG--GNAGPSVEVL 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER---------FILPKMSIDTG 227
                   GGL           E+  LVFM   +Q  ++          + +    +DTG
Sbjct: 202 I-------GGL-----------EVATLVFMSLGKQKTEKPPIELEGTPYYPMTLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDL---------------------FKHLIQASEQVTG-MKYE 265
            GLER     Q     YD                        F H++  + +  G M   
Sbjct: 244 YGLERFVWASQGSPTIYDAVFPEMVSHVMQEAGFGHRLHDSDFIHILGENAKFAGLMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G  I   R                          IVDH R  S+++ D I+P+N   GY+
Sbjct: 304 GQRIFELRQKVAEKIGIPTDKLEKMIAPVESVYAIVDHTRCLSYMLGDCIVPSNAKDGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +   R L   +  +  L+      +G +  E  Q   ++ E +  E +++  
Sbjct: 364 ARLVLRRTLRMMRELDLPDEKLGDLIERQMKIIGLSKFE--QDPDVVMEIVDREVDKYRT 421

Query: 361 TLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           T++RG   ++ +  ++  K E +  D    LYD+HG+P D+++D+  ++G A +D+    
Sbjct: 422 TMERGARTVERLAQTYKKKCEKIPLDEIITLYDSHGIPPDMVKDLATSQG-AVVDLP--- 477

Query: 420 QALEEQRSR-ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++  SR A  HS       +E+I    +EK        +D L     + E RK+  +
Sbjct: 478 ---DDFYSRIANMHS------ESEQI----QEKNPL-----FDYLDRLAHLPETRKLFYE 519

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GD 537
           +P               ++    V E   GQ V  V DQT FY E GGQ GDTG  +  D
Sbjct: 520 RP-------------GSMEFEAKVLEIFDGQYV--VLDQTLFYPEGGGQPGDTGLFLTPD 564

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ +++ D  K  E I   H I + G +R    +   +D   R  L  +H+ATH+L HA 
Sbjct: 565 GLTVRVCDTIKLGESIL--HRI-DGGNVRKGDMIRGILDEDRRLSLMRHHTATHILLHAA 621

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+H+ Q G+       R D+ H K IT  ELK IE   N ++  N        +R 
Sbjct: 622 KEVLGAHIHQAGAQKGEYSSRIDIRHYKHITPEELKKIEVVANRLVMANSSTSIAWEDRT 681

Query: 658 DAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           DA       L   G     R+RVV V    G + +   C GTH + TG+I  + I+    
Sbjct: 682 DAEQKYGFCLYQGGVPPGSRIRVVKVA---GDIEA---CAGTHCAHTGDIGTISIIRVEH 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRKLQL 772
           ++ G+ R+E   G  A  H   Q++ L   A    V    +     R  + W+E RK   
Sbjct: 736 VQDGVERLEFAAGIAAIQHKHHQEDLLNRSAEAFSVQVEALPATSKRFFDEWKEQRKEIE 795

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGI 830
             + R  +L  ++L   +  D N +S ++  +D  + EL  V   +  K   GI +LV  
Sbjct: 796 KLSSRISELESKNL---ETVDYNGISVLVKRLDLPNPELVKVATGISDK--GGIAILVAG 850

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            +  +     VV         A D+      VL GG GGG+P +AQ GGP+ +K D A+A
Sbjct: 851 GETAR-----VVVSSGQKGVKAGDVISTVCAVL-GGKGGGKPTLAQGGGPDVSKIDDALA 904

Query: 891 GVASFLK 897
              SF+K
Sbjct: 905 AGESFIK 911


>gi|14590220|ref|NP_142285.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|6707751|sp|O58035|SYA_PYRHO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3256687|dbj|BAA29370.1| 915aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 915

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 226/894 (25%), Positives = 390/894 (43%), Gaps = 184/894 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKN-IFTGQEKP 56
            +  +R  FL FF+K  HE+ P        ++P     ++   + ++ F+  + +G+  P
Sbjct: 58  TLDEMREKFLRFFEK--HEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADP 115

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAW 111
               +   Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA+
Sbjct: 116 PANPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAF 171

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +  TKE  +           ED                    IT  +N W  A  G  GP
Sbjct: 172 EFFTKELKMKP---------ED--------------------ITFKENPW--AGGGNAGP 200

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-----------KQERFI-L 219
             E+ +                  R +E+  LVFMQ+++             K E++I +
Sbjct: 201 AFEVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPM 242

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV--- 274
               +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+  N R+   
Sbjct: 243 ETKVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILMENSRLAGM 301

Query: 275 ---------------------------------------IVDHLRSSSFLIADGILPANE 295
                                                  I DH ++ +F++ADG++P+N 
Sbjct: 302 FDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNV 361

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E+
Sbjct: 362 KAGYLARLLIRKSIRHLRELGLEVPL-SEIVALHIKELHKTFPEFKEMEDIILEMIELEE 420

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA--FKLYDTHGLPLDIMQDILCARGLAGI 413
           +++ +TL RG  L+   ++ L K  I    V      Y++HGL  +I+++I    G+   
Sbjct: 421 KKYAETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVN 480

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-D 472
              +F   + ++  R +           E + F L +    T+ + Y+      FMKE D
Sbjct: 481 IPDNFYSMVAKEAERTKEEK------GEELVDFELLKDLPDTRRLYYE----DPFMKEFD 530

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KVL              ++K                   V+ D T FY E GGQ  DTG
Sbjct: 531 AKVL-------------RVIKDW-----------------VILDATAFYPEGGGQPYDTG 560

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I +G  +++T+VQK   G  + H + + G  +  M +   ID++ R Q   +H+ TH+
Sbjct: 561 VLIVNGREVKVTNVQKV--GKVIIHKVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHV 618

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS +T D  R D++H K I+  ELK IE   N I+ ++  V   
Sbjct: 619 LMGALVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWE 678

Query: 653 IMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            + R  A       L   G      +RVV +  ED  V +   CGGTH+ STG +  + I
Sbjct: 679 WLPRTTAEQKYGFRLYQGGVVPGREIRVVKI--EDWDVQA---CGGTHLPSTGLVGPIKI 733

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEY 767
           +    I+ G+ RI    G+ A      + + LK  ++ L+V    +    E     W+E 
Sbjct: 734 LRTERIQDGVERIIFACGEAAIREWQKERDLLKKASNVLRVPPEKLPETAERFFNEWKEA 793

Query: 768 RKLQLIHAKRKL-QLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQK 818
           RK ++   K++L +L V +L     KI  + F+  ++ E   ++L+ +++ L+K
Sbjct: 794 RK-EVDKLKKELARLLVYELESKMQKIGSIEFIGEVV-EGSMEDLRELVEKLKK 845


>gi|153869734|ref|ZP_01999269.1| alanyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152073804|gb|EDN70735.1| alanyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 357

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/359 (38%), Positives = 213/359 (59%), Gaps = 13/359 (3%)

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           D QK  + + VH   +  G +     L   ID + R+  + +HSATHLLH AL  ILG H
Sbjct: 3   DTQKMGK-VHVHLGQLTAGTIHIGDQLQAQIDAEARQATARHHSATHLLHAALRQILGEH 61

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q GS + P+ LRFD +H +PITS +L +IE  VN+ I  N+PV TR+M+ E+A+ SGA
Sbjct: 62  VKQKGSLVEPERLRFDFSHFEPITSEQLANIERLVNEQILLNIPVQTRLMSLEEAMNSGA 121

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL G KY+++VRV+S+     G  S+ LCGGTHV   G+I L  IV+E+   AGIRRIE
Sbjct: 122 MALFGEKYDEQVRVLSM-----GDFSTELCGGTHVRQVGDIGLFKIVAETGTAAGIRRIE 176

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLN 782
           AITG RA   +   +++L  +   LK +Q ++  RV ++ E  R    ++   + KL  N
Sbjct: 177 AITGIRALDWVAETEKQLNVIGDLLKTNQNSLTERVAQLIEYNRNYEKEISRLQAKLASN 236

Query: 783 V-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
              DL+    +I  +  ++  +  +D K+L++ +D L+ K+ + +++L  + K+ K S++
Sbjct: 237 QGSDLASQAVEINGIKILAAQLDNIDVKQLRNTLDQLKNKLGTAVVVL-SLVKDNKISLV 295

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             VT+D  D+  A +L    AK + GG GGGRP MAQ GG + +K   A+  V  ++++
Sbjct: 296 AGVTKDATDKIKAGELLNYVAKQV-GGKGGGRPDMAQGGGNDPSKLTPALQSVTQWVEE 353


>gi|152002522|dbj|BAF73546.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 430

 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 242/473 (51%), Gaps = 61/473 (12%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFS G YFK+ AI  A++LLT  K F     +LYIT + +D++ ++ W  + G+  +
Sbjct: 1   MLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEKLYITYFFQDQDTYQYWLDL-GVEKN 59

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFM 206
            +I + +N  FW +   GP GPC+EIFFD+G+        L     E +R+IEIWN+VF 
Sbjct: 60  HLIPLKSN--FWQIG-PGPSGPCTEIFFDRGKTFDSRNKELIIQDLENDRFIEIWNIVFS 116

Query: 207 QFEQQNKQ--ERFI-LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           Q+    K   E++  LP  +IDTG GLER+A +LQ    N++ DLF  LI+A E++T +K
Sbjct: 117 QYNCDPKLPIEKYQELPSKNIDTGAGLERLACILQNTKTNFETDLFFPLIKALEKMTQIK 176

Query: 264 YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
           Y G    + ++I DHL++  F I DG +  NE RGYVL++++RRA    + LG  +P + 
Sbjct: 177 YTGQE--SFKIITDHLKTLVFAINDGAVLTNEKRGYVLKKLLRRAANEGKKLGLDKPFLH 234

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            L+P     M   Y EL   + +I + L  ++  F +TL          L HL ++  L+
Sbjct: 235 QLVPPTVAMMKDFYKELCTNQEMIAKVLLQQENIFEQTLKTA---EKTFLQHLTQN-TLS 290

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G   FKLYDT+G+P D++ D    + +   D   F + L + ++ ++ +         ++
Sbjct: 291 GKNFFKLYDTYGIPEDLILDYAKKKNIT-TDYQKFQELLHDHQNLSKQNQTSQTHMNKQE 349

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
             F   +    ++FIGY                C+          + ++K +  +G    
Sbjct: 350 EAFL--QFLTPSEFIGY------------TNFTCK----------TKVIK-VFDKG---- 380

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
                    +V ++TPFYA  GGQ+ D G    D  +  +T + K   G  +H
Sbjct: 381 ---------IVLEKTPFYANMGGQIEDGGWI--DNTK--VTKITKLPNGQILH 420


>gi|18976642|ref|NP_577999.1| alanyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|22096192|sp|Q8U425|SYA_PYRFU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18892213|gb|AAL80394.1| alanyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 914

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 254/974 (26%), Positives = 433/974 (44%), Gaps = 197/974 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKN-IFTGQEKP 56
            +  +R  FL FF+K  HE+ P        ++P     ++   + ++ F+  + +G+  P
Sbjct: 58  TLDEMREKFLSFFEK--HEVYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADP 115

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAW 111
               +T  Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA+
Sbjct: 116 PANPLTISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKHIYWIDETVELAF 171

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +  TKE  +           ED                    IT  +N W  A  G  GP
Sbjct: 172 EFFTKELKMKP---------ED--------------------ITFKENPW--AGGGNAGP 200

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-----------KQERFI-L 219
             E+ +                  + +E+  LVFMQ+++             K E+++ +
Sbjct: 201 AFEVLY------------------KGLEVATLVFMQYKKAPANADPSQVVIIKGEKYVPM 242

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV--- 274
               +DTG GLER+  + Q     YD  +  ++I+  +++ G++     I+  N R+   
Sbjct: 243 ETKVVDTGYGLERLVWMSQGTPTAYDA-VLGYVIEPLKRMAGVEKIDERILMENSRLAGM 301

Query: 275 ---------------------------------------IVDHLRSSSFLIADGILPANE 295
                                                  I DH ++ +F++ADG++P+N 
Sbjct: 302 FDIEDMGDLRYLREQVAKRVGISVEELERLIRPYELIYAIADHTKALTFMLADGVVPSNV 361

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E+
Sbjct: 362 KAGYLARLLIRKSIRHLRELGLEVPLA-EIVAMHIKELSPTFPEFKEMEDIILEMIELEE 420

Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +++ +TL RG  L+   ++ L   G +EI L   + F  Y++HGL  +I+++I    G+ 
Sbjct: 421 KKYAETLRRGSDLVKREIAKLKKKGANEIPLEKLITF--YESHGLTPEIVKEIAEKEGVK 478

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
                +F   +      A+     +     E + F L +    T+ + Y+      FMKE
Sbjct: 479 VHIPDNFYSLV------AKEAEKQVEEKEEEVVDFELVKDLPDTRTLYYE----DPFMKE 528

Query: 472 -DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
            D KVL                       +++E+ V       V DQT FY E GGQ  D
Sbjct: 529 FDAKVL-----------------------KVIEDWV-------VLDQTAFYPEGGGQPYD 558

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINHSA 589
           TG  + DG  +++T+VQK  + + +H   VER  L  E ++V   ID++ R Q   +H+ 
Sbjct: 559 TGILVVDGEEVKVTNVQKVGK-VILHK--VERPELFKEGTIVHGRIDWERRIQHMRHHTG 615

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+L  AL  +LG HV Q GS ++ D  R D+TH K I+  E+K IE   N ++ +N  V
Sbjct: 616 THVLMGALVRVLGKHVWQAGSQLSTDWARLDITHYKRISDEEIKEIERLANRVVMENRRV 675

Query: 650 VTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               + R +A       L   G      +R++++  ED  V +   CGGTH+ STG I  
Sbjct: 676 RWEWLPRTEADEKYGFRLYQGGVVPGRIIRILNI--EDWDVQA---CGGTHLPSTGLIGP 730

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---W 764
           + I+    I+ G+ RI    G+ A      + E +K  +  L+V    +    E     W
Sbjct: 731 IKILRTERIQDGVERIIFACGEAAVREWQKEREIIKRTSQILRVPPEKLPETAERFFNEW 790

Query: 765 EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +E RK      K   +L V +L     K+ ++ F+  I+ E    +L+   + L+K  ++
Sbjct: 791 KEARKEVEKLRKELAKLLVYELESKVEKVGEIEFIGEIV-EGSMDDLREAANKLRK--EN 847

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++LV     K+   ++ V + L   + A + A+L   V  GGGGGGR  +AQ    + 
Sbjct: 848 RVVVLVN----KEGHFVVAVGDKL--PYTAGEFAKLITSV-AGGGGGGRKELAQGKIRDI 900

Query: 883 NKADQAIAGVASFL 896
            KA +AI  V   L
Sbjct: 901 EKAKEAIEKVKGSL 914


>gi|292654386|ref|YP_003534283.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291372225|gb|ADE04452.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 922

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 250/964 (25%), Positives = 407/964 (42%), Gaps = 176/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL FF+++ HE +   P ++    +D  ++ T + +  F+ + T G+  P  
Sbjct: 61  TLEEMREKFLSFFEEHDHERIDPYPVAANRWRDD--VLLTQASIYDFQPLVTSGETPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F       A + A D    E 
Sbjct: 119 NPLTVSQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFN------AREEAGDKYAYEG 168

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +         VY +DE      +    L AD I  IT  ++ W     G  GP  E+ + 
Sbjct: 169 E---------VYWKDETVRLCDEFFESLGAD-ISEITYIEDPWVGG--GNAGPAFEVLY- 215

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGL 230
                            R  E+  LVFM  +Q    +  +        +    +DTG GL
Sbjct: 216 -----------------RGAELATLVFMSMKQDPDGDYELKDGNTYSPMDTYIVDTGYGL 258

Query: 231 ERMATVLQEKTNNY-------------------------------------DIDLFKHLI 253
           ER   V Q     Y                                     DID    L 
Sbjct: 259 ERWTWVSQGTPTVYEAVYPDMIEFLKDNVGIEHTDEEEELIHRAAKLSGHLDIDEIDDLA 318

Query: 254 QASEQVTGM----KYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
            A  +V G     + E  +++        I DH R+ +++  DGI+P+N G GY+ R ++
Sbjct: 319 TARAEVAGELGVDEAELTSLLRPLEDIYAIADHCRTLAYMFGDGIVPSNVGTGYLARMVL 378

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI--QAKLLIEETLRSEDERFGKTLD 363
           RR       LG   PL          E+     E +  Q +  I + +RSE+ ++ KTL+
Sbjct: 379 RRTKRLVDNLGVDAPL---------DELVDMQAERLDYQNRDTIRDIVRSEERKYRKTLE 429

Query: 364 RGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           RG   +  +   +   DE +  D   +LYD+HG+  D++QDI   RG A +DI     +L
Sbjct: 430 RGSRKVQQLADDYADTDEPIPLDELIELYDSHGIQPDMVQDIAEERG-ATVDIPDDFYSL 488

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
              R     H    G G  ++    L +   AT  + YD    ++F              
Sbjct: 489 VADR-----HEQVDGEGEADERDDRLGD-LPATDKLYYDDQERTEF-------------- 528

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  ++V  + ++ E           +VV DQT FY E GGQ  D G    D   ++
Sbjct: 529 ------EAVVLDVFEREE---------GYDVVLDQTMFYPEGGGQPADHGSLATDDTTVE 573

Query: 543 ITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +TDVQ   + + +H    + G    +R ++      D + RR+L  +H+ATH++ HA+ T
Sbjct: 574 VTDVQIVGD-VVLHRTDEDPGKGEFVRGQL------DAERRRRLMRHHTATHVIGHAIRT 626

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H+ Q G+    D  R DVTH   IT  E+  IE   N+I+ +N+PV     +R DA
Sbjct: 627 VLGDHIRQAGASKGVDRSRLDVTHYDRITREEVTQIERVANEIVMRNIPVKQEWPDRRDA 686

Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L   G    +++R++ V     G    A CGGTHV  TG+I  + +++   ++
Sbjct: 687 EKKYGFDLYQGGIPPGEQIRLIHV-----GSDVQA-CGGTHVKRTGDIGAVKVLTTEPVQ 740

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHA 775
            G+ R+    G  A       ++ L   A  L V+  +V    E  + E+  R   +   
Sbjct: 741 DGVERVVFAAGDAAVEATQRTEDALYGAADVLDVNPADVPETAERFFTEWKERGKTIDRL 800

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKE 833
           K +L          +I D++    ++  +  D+ EL++  +AL   ++ G + ++G +  
Sbjct: 801 KTELAEARAAAGADEI-DIDGTPAVVQRLDGDADELRATANAL---VEEGKVAVLGSAAG 856

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
             A  ++ V +D+      V + RL+ KV GGGGG      AQ GGP+ +  D A+    
Sbjct: 857 GSAQFVVGVPDDVGINAGQV-VGRLAGKVGGGGGGPA--DFAQGGGPDVDALDGALDEAP 913

Query: 894 SFLK 897
             L+
Sbjct: 914 DVLR 917


>gi|320534361|ref|ZP_08034847.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133403|gb|EFW25865.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 277

 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 115/272 (42%), Positives = 168/272 (61%), Gaps = 16/272 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +    +
Sbjct: 3   TSEIRSRWLDYFAANEHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEEAPWPRAAS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT       +
Sbjct: 62  VQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEGGY 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI +D
Sbjct: 118 GLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIHYD 177

Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERF----ILPKMSIDTGMGLER 232
           +G +  P G P    +G+R++EIWNLVF +F   + K   F     L + +IDTG GLER
Sbjct: 178 RGPDYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           +A ++Q+K N Y+ID    +I+A+E+++G  Y
Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIKAAEELSGKVY 269


>gi|145592424|ref|YP_001154426.1| alanyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|205830186|sp|A4WN07|SYA_PYRAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145284192|gb|ABP51774.1| alanyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 892

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 224/861 (26%), Positives = 354/861 (41%), Gaps = 167/861 (19%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + +++ +R  FL FF++ GH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  VDSLTELRERFLRFFERRGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            +   Q  +R      D+D VGR+ RH T FEM+ + +F   + ++              
Sbjct: 114 PLVISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFN--YPDK-------------- 153

Query: 120 LDQRRLYITVYDEDEE-AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                 Y+   DE  E A++ + K  G++ ++I   T  ++ W     G  G C E+   
Sbjct: 154 ------YVYWIDETTEYAYEFFTKELGITPEEI---TFKESMWEGG--GNAGECYEVLV- 201

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVL 237
                            R +E+  LVFM +E   K+ +++ LP   +DTG GLER+  +L
Sbjct: 202 -----------------RGLEVATLVFMHYE--TKEGKYVELPLKIVDTGYGLERIYWLL 242

Query: 238 QEKTNNYDIDLFKHLIQASE------------------------QVTGMKYEGNNIVNH- 272
           +     YD      L +A +                        +V G++   + I    
Sbjct: 243 KGTPTIYDAVFGPFLDRARQKLGVPEPPAEVMGKASIYFGQMDPEVIGLEKAYDLIAEKI 302

Query: 273 -----------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                             V+ DH R+ S++IADG++P+N G GY+ R ++RR +   +L 
Sbjct: 303 GVDGKWLREVFRPQEALYVLADHSRTVSWMIADGVIPSNSGAGYLARLLIRRILKNLKLA 362

Query: 316 GYTEPLM----MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
           G   PL+    MHL      E+   YPE+  A+ LI E +  E+ ++ + L     ++  
Sbjct: 363 GIEAPLVELIDMHL-----KELKVDYPEVWAARDLILELVDLEERKYKEILKSAPTVVKK 417

Query: 372 VLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
            L    +     L+ D    LYD+ GLP +I+ D+   +G+       F   L  + ++ 
Sbjct: 418 ALDEARRRGAASLSPDDLVALYDSFGLPPEIVADVAKTQGVEVKVPDDFYSRLAARHAK- 476

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGY----DLLRGSKFMKEDRKVLCQKPPIDLT 485
                              KEK   +  +      DL R  +   ED  +   K      
Sbjct: 477 -------------------KEKQPESTLVEMAKVIDLPRTRELFYEDPYMRSFKAK---- 513

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                           V   V G+ V  V DQT FYAE GGQ GD G     G   ++ D
Sbjct: 514 ----------------VLRVVDGKYV--VLDQTAFYAEGGGQPGDVGVLKYSGGAAKVVD 555

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQ+    I VH  +VE       + +V  ID++ R  L   H+ TH+L  ++  +LG H+
Sbjct: 556 VQRVGH-IIVH--VVEGQPPPEGVEVVGEIDWERRYALMKMHTGTHVLIQSIRRVLGPHI 612

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+       R DVTH K  T  E+  IE   N  +  NLPV  +IM R +A A    
Sbjct: 613 WQAGAQKDIPSSRLDVTHYKLPTPEEVAEIERLANSAVQANLPVYVKIMPRNEAEAKYGF 672

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G      +RVV +   D   +    CGGTH+ STGEI ++ I     I  G+ R 
Sbjct: 673 ILYQGGVVPAREIRVVQIG-PDSDPYDVQACGGTHLKSTGEIGIIKIQKVERIADGVVRF 731

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-------GRVEEIWEEYRKLQLIHAK 776
              TG  A S++   + +L   A     S+ NVV        R EE   ++R    ++AK
Sbjct: 732 IFTTGLHALSYIQELERQLGQAAQVAGGSRDNVVEAVKRLASRAEEAERKWRHYAELYAK 791

Query: 777 RKLQ-LNVEDLSCHKIADVNF 796
           +  Q L  E +  +K+A V  
Sbjct: 792 QMAQSLKAEQVGRYKLAVVEL 812


>gi|330507979|ref|YP_004384407.1| alanyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928787|gb|AEB68589.1| alanyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 909

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 243/967 (25%), Positives = 407/967 (42%), Gaps = 204/967 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF+  GH  +    +       +  T + +  F+   T GQ  P    +
Sbjct: 60  SLDEMREHYLGFFEARGHTRIKRYPVAARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGR+ RH T FEM+ +  F       Y+K+R ++L  +LL  
Sbjct: 120 TISQPCIRL----DDLDSVGRSGRHLTTFEMMAHHVFNTPDREIYWKDRTVRLCDELLV- 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                       GL  D +  +T  +N W  A  G  GP  E+ 
Sbjct: 175 ----------------------------GLGMDPLA-VTYKENPW--AGGGNAGPSVEVM 203

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------------EQQNKQERFILPKMSI 224
                   GGL           E+  LVFM              E+  K + +I     +
Sbjct: 204 V-------GGL-----------ELATLVFMDLVAAPAGAVEIKGERYEKMKNYI-----V 240

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------IVNHRV--- 274
           DTG GLER           YD  +F  L++    + G+++  ++         N R+   
Sbjct: 241 DTGYGLERFVWASNGAPTIYDA-IFPDLVRQVADLAGVEHNLDDPEYAEIFAQNARLAGM 299

Query: 275 --------------------------------------IVDHLRSSSFLIADGILPANEG 296
                                                 +VDH R  ++++ DGI+P+N  
Sbjct: 300 VDLDEYSMSDLRAKIAGSIGIDPGRLEKAILPMERVYAVVDHTRCLAYMLGDGIIPSNVK 359

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
            GY+ R ++RR +   + LG   PL   L+    + +   YP+  ++   I + L  E++
Sbjct: 360 GGYLSRLVIRRTLRLMKELGLRLPLA-DLVQLQISRLD--YPDWEESFATIRDILDQEEQ 416

Query: 357 RFGKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++ +TL++G+ L+     S+L K+E +       LYDTHG+P +I               
Sbjct: 417 KYAETLEKGMRLVRKTAESYLKKNEPVPLSEMIALYDTHGIPPEI--------------- 461

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
                        AR  ++ +G+         L + +       Y L+       E  + 
Sbjct: 462 -------------AREAAVQMGAQV------ELPDNF-------YSLVAKKHIRAEPEEE 495

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
             +KPPI     +        Q+ E  V + V G     + D+T  Y E GGQ  D G  
Sbjct: 496 --KKPPIPGKTELLFYENPFEQEFEAEVLDVVEGA---AILDRTLLYPEGGGQPADHGTL 550

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             DG   Q+TDVQK   G  V H + E G L     +   +D   R   + +H+ATHL+H
Sbjct: 551 EKDGQLFQVTDVQKS--GDVVLHKLAEPGCLAKGDRVKGKVDMLRRLAHARHHTATHLVH 608

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            +   +LG H+ Q G+  + D  R D++H K IT AELK+IE   N  + + +PV T+ +
Sbjct: 609 DSAKRVLGKHIWQAGAQKSEDRARLDISHFKRITDAELKAIELEANRRVMELVPVDTQFL 668

Query: 655 NREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            R +A       L   G      +RVV V     G    A C GTHV++TG I ++ I+ 
Sbjct: 669 PRTEAEKLFGFELYQGGVPPGKLIRVVRV-----GSDIEA-CAGTHVTNTGMIGMIKILR 722

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
              ++ G+ R+E   G+ A      +D+ L   A  L+V    +    E  +EE+++ Q 
Sbjct: 723 AERVQDGVERVEFAAGEAAVRASQARDDLLAGAAGILRVPNEQLPRTAERFFEEWKEQQ- 781

Query: 773 IHAKRKLQLNVEDLSCHKIA-------DVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               ++++   EDL+  ++         ++ +  I+ ++ + ++  ++ A     +   +
Sbjct: 782 ----KEIERLKEDLAAARLKTLVSEAETIDGLRVIVQKMGNADIDELLKAAALLAEEDCV 837

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            L+G    K   ++  V +  L +   A  + + +AKVL GGGGGGRP +AQ GGP+  +
Sbjct: 838 ALLG---SKTGKLVAAVGQSGLSKGVKAGSIIKAAAKVL-GGGGGGRPQLAQGGGPDTER 893

Query: 885 ADQAIAG 891
            ++A+A 
Sbjct: 894 LEEALAA 900


>gi|156936991|ref|YP_001434787.1| alanyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|205830070|sp|A8A8X8|SYA_IGNH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156565975|gb|ABU81380.1| alanyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 901

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 211/876 (24%), Positives = 387/876 (44%), Gaps = 158/876 (18%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVTTVQK 66
           +  F++FF++ GH  +    ++      L  T + +V F+ ++  G   P    +  VQ 
Sbjct: 61  KREFIKFFEEKGHVPVEPRPVVARWRDDLFLTIASIVVFQPHVTKGLVPPPANPLVIVQP 120

Query: 67  CVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDL 120
           C+R      D+DNVG T  RH T F M G+ +F       Y+KE  ++LA++  T+   +
Sbjct: 121 CIRL----EDIDNVGLTLGRHMTGFHMGGHHAFNYPDNWVYWKEETVKLAYEFFTERIGI 176

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            +  L           FK                   +++W     G  GP  E+     
Sbjct: 177 PEELL----------NFK-------------------ESWWEGG--GNAGPSFEV----- 200

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFILPKMSI-DTGMGLERMATVL 237
             + G            +E+  LVFMQ++  ++N Q++++  K+ + DTG G+ER+A   
Sbjct: 201 -TVAG------------LELATLVFMQYDVVEENGQKKYVPMKLKVVDTGYGIERIAWFT 247

Query: 238 QEKTNNYDI--------------------DLFKHLIQ-------------------ASEQ 258
           Q+    +                      +L   L++                   ASE+
Sbjct: 248 QKTPTAFHAVYGELLHEFHKRLGVEEPPDELLYELVRSAGLMDPERPETLERVYKRASEK 307

Query: 259 VTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
           + GM+ +    ++ R      ++DH R+  +++ADGI+P+N G GY+ R ++RR +   +
Sbjct: 308 L-GMRVDEIREIHSRASLVYQVLDHTRTLMWMLADGIVPSNVGEGYLARLVIRRTLRALK 366

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            L    PL   LL          YP   + K  I + +  E ++F +TL +G  +   V+
Sbjct: 367 KLKADVPLS-ELLELQINYWKDDYPRAWKNKDYILDVVEFEQKKFEETLKKGRNI---VI 422

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
             + K + +  D   +LYD+HG+P DI+ +I    G+  +++     ++   R +   H 
Sbjct: 423 RLIKKKKQITLDDLVELYDSHGIPPDIVSEIAKEMGVR-VEVPHNFYSIVASRHQKTVHK 481

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
           +    G  EK              +  +++  +K     R++  + P +           
Sbjct: 482 V---KGAEEK------------GKLPPEIIEWAKGFPPTRRLFHEDPYMK---------- 516

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
                 E   + +   +  V+ D+T FY E GGQ  DTG         ++ DVQK  + +
Sbjct: 517 ------EFDAQVIGSNRNYVILDKTAFYPEGGGQAADTGVIASGDESYRVVDVQKVGD-V 569

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            VH  +++R     ++ +V  ID++ R +L  +H+ THLL  AL  +LG HV Q G+  T
Sbjct: 570 IVH--VLDRDYSGGKV-VVGRIDWERRYRLMRHHTGTHLLLGALRKVLGDHVWQAGAEKT 626

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
           P+  RFD TH KP+T  E++ IE+  N +I +   +    + R +A A    ++   G  
Sbjct: 627 PEKARFDFTHHKPLTREEVRKIEEVANKVIDERRKIRAFTLPRNEAEARYWFSIYQGGVP 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            +  +R+V +E  D        C GTH+S+TGE+  L I+S   I+ G+ R+E + G R 
Sbjct: 687 MSKDIRLVEIEGWD-----VEACFGTHLSNTGEVGSLKIISTRKIQDGVVRVEFVAGTRV 741

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                  ++ ++  +  L  +   +V R++ + +E   ++   A+ + +L  E L   K 
Sbjct: 742 AEEAAKMEDLIREASEKLSTNPEMLVKRIDALQKELENVKKTVAEYRKRLVSEYLKAAKA 801

Query: 792 AD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            D + ++   +   D + ++ V+ AL     + +I+
Sbjct: 802 LDGIKYVK--LDLRDPELVQEVLRALSSDSPAAVIV 835


>gi|297620181|ref|YP_003708286.1| alanyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379158|gb|ADI37313.1| alanyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 936

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 202/823 (24%), Positives = 357/823 (43%), Gaps = 142/823 (17%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           + EF    GH  +  S ++     D  L+   +  V    + +G  KPV   +T  Q C+
Sbjct: 68  YREFLHSEGHTPIKRSPVVAKRWRDDILLTIATIAVFQPWVTSGLVKPVENPLTIAQPCI 127

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M  + +F       Y+ +R ++L +  +TK       
Sbjct: 128 RL----NDIDNVGRTGRHLTCFTMGAHHAFNTEDDFKYWTDRTVELCYKFMTK------- 176

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                              I G S      IT  +++W     G  GPC E+       I
Sbjct: 177 -----------------IGIEGKS------ITFIESWWEGG--GNAGPCYEV-------I 204

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G           +E+  LVFMQF++       I P   +DTG G+ER     Q  +N 
Sbjct: 205 THG-----------VELATLVFMQFKKVGDTYEEI-PLKIVDTGYGIERFVWASQGTSNT 252

Query: 244 YDI----------------DLFKHLIQASEQVTGMKYEGNNIVNHRV------------- 274
           Y+                 ++ K ++  S ++ G+  +  N+ + RV             
Sbjct: 253 YEAIFSNIINILKKNAGIGEINKKILDESAKLAGL-MDIENVGDLRVLRQQVAEKMNMDV 311

Query: 275 ---------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE 319
                          I DH R  +F++ DGI+P+N   GY+ R ++R+ + Y   +G T 
Sbjct: 312 NELDKVLSPLEYIYAITDHTRCLTFMLGDGIVPSNVKDGYLARLVLRKTLRYMEKVGITM 371

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
            +   ++     E+   YPEL++ K  I + L SE+ ++ +T+++G  ++  ++    K 
Sbjct: 372 SIN-DIVDLQLEELKENYPELMKMKKYIHDVLESEERKYAQTVNKGRGIVQRMVQSNKKS 430

Query: 380 EI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID----IISFNQALEEQRSRARAHS 433
            +  +  D    LYD+ GLP +++QDI+       I+    I      L    + A   S
Sbjct: 431 SVSEITLDDLINLYDSKGLPPELVQDIIFEINENEINNLKRIAERKGELVSDDAIAEIKS 490

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +     +  +  + EK+   +         S    E+     + PP+++ NG S    
Sbjct: 491 KQIKINVPDNFYTIVAEKHEEEK---------SDVQNENIDSKKELPPVNV-NGKSVEPT 540

Query: 494 AIV-----QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
             +     +Q +   + ++  +  V+ D+T FYAE GGQ  D    IG    + + DVQK
Sbjct: 541 EFLFHRNSKQIDFKAKVLAVVEDHVILDKTLFYAEGGGQKYD----IGTLSSIDVIDVQK 596

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           +     V+H + +    +    +   I+++NR +L  NH+ATH+++ A + +LG+H+ Q 
Sbjct: 597 QNN--VVYHKVSDVKSFKVGDMIYGKINWENRIKLMRNHTATHIINAAATQVLGNHIWQT 654

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           GS +  +  R D+TH + IT  E+K IE   NDI+ + +P+    + R +A      ++ 
Sbjct: 655 GSNVDTEKGRLDITHFERITRDEIKEIEKVANDIVLRAIPITCEFLERNEAEQRYGFSIY 714

Query: 669 --GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G    D +R++S+   D     +  CGGTH  +T E+  + I+    I+ G+ R+E  
Sbjct: 715 QGGVVPGDTLRIISIPDID-----TEACGGTHCENTLEVGYIKILKTERIQDGVERLEYS 769

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +G  +   +   ++ +   AS   V    +    E  +EE+++
Sbjct: 770 SGANSVGEVATIEDLVLDSASVFGVPAEQLPKTAERFFEEWKE 812


>gi|20089092|ref|NP_615167.1| alanyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|22096190|sp|Q8TU79|SYA_METAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19913955|gb|AAM03647.1| alanyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 925

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 253/969 (26%), Positives = 405/969 (41%), Gaps = 196/969 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+S +R  +L FF+  GH  L    ++      +  T + +  F+   T GQ  P    +
Sbjct: 59  NISEMREYYLSFFEARGHTRLDRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE  ++L  +LLT 
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTNFEMMAHHAFNKRGNEIYWKEHTLELCDELLT- 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                        L  D    +T  +  W  A  G  GPC E+ 
Sbjct: 174 ----------------------------SLKVDPFA-VTYKEEPW--AGGGNAGPCVEV- 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMS---IDTGMG 229
                 I  GL           E+  LVFM  +   K +  I      KM    +DTG G
Sbjct: 202 ------IVHGL-----------ELATLVFMDLKTDKKGDILIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------VNHRV-------- 274
           LER     +     YD  LF  ++     + G+++E NN         N R+        
Sbjct: 245 LERFVWASKGSPTIYDA-LFPGIVNELMGLAGLEHELNNTEYSNILAQNARLAGFMDVSE 303

Query: 275 ----------------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 KANLLELRKKVASSIGMTVDKLSVIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLM----MHL--LPALCTEMGSAYPELIQAKLLIEETLRSE 354
            R ++RR +   + L    PL     MH+  +P         YPE      +I++ L SE
Sbjct: 364 ARLVLRRTLRMMKDLDIRTPLSEIVDMHIRNMPE--------YPEFRANFPVIQDILESE 415

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +E+F  T++RG  ++    SH  K  E +      +LYD+HG+P ++ +++    G+   
Sbjct: 416 EEKFNITMERGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVAADIGVGVE 475

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              +F   + E  ++A            E I F+ + K+              +F  E  
Sbjct: 476 FPDNFYSIIGELHNKAEEKE-------EEVIPFAERLKHLPKT--------KRRFYDEPT 520

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           ++  +   +D+ +                          +V D T FYAE GGQ  D G 
Sbjct: 521 RLEFEAVVLDVFDN------------------------HIVLDNTFFYAEGGGQPADIGT 556

Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT--IDYQNRRQLSINHSAT 590
            ++GD I  ++ DVQ   EG+ VH   +  G L      ++T  +D + R  L+ +H+AT
Sbjct: 557 ISVGD-IVYKVVDVQV-YEGVIVHTVDIPDGELEITKGDIITGKVDERRRMTLARHHTAT 614

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+++ A   +LG H+ Q G+    D  R D++H K I+  ELK IE   N  + +N  V+
Sbjct: 615 HIVNDAARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPEELKQIELLANRTVMENKRVI 674

Query: 651 TRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           T  M R +A       L   G    +++R+V V     G    A CGGTH  STG I  +
Sbjct: 675 TEWMPRIEAEQVYGFGLYQGGVPPGEKIRIVKV-----GDDVEA-CGGTHCLSTGVIGPI 728

Query: 709 YIVSESSIRAGIRRIEAITG-------QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
            I+    I+ G+ R+E   G       Q+  S L+   + L      L VS     G  +
Sbjct: 729 KILKTERIQDGVERVEFAAGIAAVRAMQKMESLLVDSAKTLSVPPEHLPVSVERFFGEWK 788

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           ++ +E  +L+   A+ ++   + D S  ++A +  +S  +   DS EL+ +   L K  Q
Sbjct: 789 DLKKENERLKEDLARSRVYRMLGDAS--ELAGLRVVSEQVPGADSLELQKIATELLK--Q 844

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++ L+    E    V  V  + +    NA +L R  +K++ GGGGGG+P +A  GG +
Sbjct: 845 ENVVTLLASDLEGVKLVASVGEKAIECGINAGNLVREMSKIV-GGGGGGKPALAMGGGTD 903

Query: 882 GNKADQAIA 890
             +   A++
Sbjct: 904 PTRIQDALS 912


>gi|154150810|ref|YP_001404428.1| alanyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|189082109|sp|A7I7S4|SYA_METB6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|153999362|gb|ABS55785.1| alanyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 914

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 249/962 (25%), Positives = 398/962 (41%), Gaps = 194/962 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V  +R  FL FF+KNGH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  TVDEMREAFLSFFEKNGHTRIERYPVAARWRDDIYLTIASIADFQPFVTAGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEML + +F       Y+K+R ++L    L  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTTFEMLAHHAFNTPTEEIYWKDRTVELCDQFLAS 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                     I G     + ++T  ++ W     G  GP  E+ 
Sbjct: 174 --------------------------IGG----DLNKVTYKEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDTG 227
                   GGL           E+  LVFM   +Q         N ++ + +    +DTG
Sbjct: 202 I-------GGL-----------EVATLVFMSLGRQKTSHPGYDLNGEKYYPMKLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDI----------------------DLFKHLIQASEQVTGMKYE 265
            GLER+    +     YD                       D  K L   +     M   
Sbjct: 244 YGLERLVWASKGSPTIYDAVFPDMVSRVMSSAGISHLLENKDYTKILAMNARFAGLMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G+N+ N R                          IVDH R  ++++ D I+P+N   GY+
Sbjct: 304 GSNLFNLRKKVAAAIEISPEKLDRMITPIEKVYAIVDHTRCLAYMLGDCIVPSNVREGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS--AYPELIQAKLLIEETLRSEDERF 358
            R ++RR +   R++   E  M   L  L  E        +  Q   ++ E +  E E++
Sbjct: 364 ARLVIRRTL---RMM--NEFKMQDTLADLIEEQMKIIGMDKFQQDIAVVREIVDREVEKY 418

Query: 359 GKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
             TLDRG  ++  V  S+  K + +       LYD+HG+P ++++DI    G A ID+  
Sbjct: 419 AITLDRGTRIVQKVAKSYKAKSQRVPLAEIITLYDSHGIPPEMIKDIAAKEG-AVIDLPD 477

Query: 418 --FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             ++Q  +      +  +    +G  E++                        +   +K+
Sbjct: 478 NFYSQIADMHSESKKEAAPDKTAGYAERV----------------------SALPPTKKL 515

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGC 533
             ++P                  G+   EAV     +   V DQT FY E GGQ  DTG 
Sbjct: 516 YYEQP------------------GDTEFEAVVIDFFDEYAVLDQTLFYPEGGGQPADTGS 557

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +G     ++ DV K  E + +HH  +  G+L+    +   ID + R  L  +H+ATH+L
Sbjct: 558 LVGSDSMARVDDVIKVGE-VILHH--ISGGVLQRGERVKGMIDEERRFSLMRHHTATHIL 614

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            HA   +LG H+ Q+G+   P+  R D+ H K IT  EL+ IE   N ++  N PV   I
Sbjct: 615 LHAAKAVLGVHIHQSGAQKGPESSRIDIRHFKHITPDELRKIEIEANRMVMANRPVEISI 674

Query: 654 MNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            NR  A      AL   G      +R+V V    G + +   C GTH  STGEI  + I+
Sbjct: 675 ENRTKAEQEYGFALYQGGVPPGKDLRIVKVA---GDIEA---CAGTHCRSTGEIGAIKIL 728

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYR 768
               I+ GI RIE   G  A  ++   ++   S A  L V   N+   V R    W++ +
Sbjct: 729 RVEHIQDGIERIEFAAGTAAVYYMQHLEQIAASSADVLSVQLENLPPTVTRFFSEWKDQK 788

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           K     ++R ++L ++ +    I  +  +   I ++  +EL S+  +L +K   G+ +L 
Sbjct: 789 KEIERMSQRLVELEIQAIQPESIGGIPVVVKRI-DLAPRELSSIATSLSEK--GGVALL- 844

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +   + + +++ + D   R NA D + +L + +   G GGG+P MAQ GGP  +K D 
Sbjct: 845 --ATPGETARIVLASGDA--RVNAGDIIGQLCSLLG--GKGGGKPQMAQGGGPEVDKLDL 898

Query: 888 AI 889
           A+
Sbjct: 899 AL 900


>gi|76664719|emb|CAJ17799.1| alanyl-tRNA synthetase [Candidatus Phytoplasma solani]
          Length = 259

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/261 (43%), Positives = 164/261 (62%), Gaps = 14/261 (5%)

Query: 75  NDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDE 132
           ND+ NVG T+RHHTFFEMLGNFS G YFK+ AIQ A++LLT  K F     +LYIT Y  
Sbjct: 2   NDIQNVGNTSRHHTFFEMLGNFSIGDYFKKEAIQYAYELLTSPKWFSFPVEKLYITYYPT 61

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPG 189
           D++A+K W ++ G+  + +I + +  NFW +   GP GPC+EIFFD+GE        L  
Sbjct: 62  DQDAYKHWLEV-GIPKEHLISLKS--NFWQIG-PGPSGPCTEIFFDRGEKYDSRSQELII 117

Query: 190 SSEEGERYIEIWNLVFMQF--EQQNKQERFI-LPKMSIDTGMGLERMATVLQEKTNNYDI 246
              E +R+IEIWN+VF Q+  +     E++  LP  +IDTG GLER+A++LQ+  NN++ 
Sbjct: 118 KDLENDRFIEIWNIVFSQYNCDPHPLIEQYPELPSKNIDTGSGLERLASILQKTDNNFET 177

Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
           DLF  LIQ  + +    Y G    + ++I DH+++  F I DG    NE RGYVL++I++
Sbjct: 178 DLFFSLIQKIQHIAQTPYHGQK--SFKIIADHVKTLVFAINDGATLTNEKRGYVLKKILK 235

Query: 307 RAMCYARLLGYTEPLMMHLLP 327
           R++   + L   +P +  L+P
Sbjct: 236 RSVNQGKKLNLDQPFLYQLVP 256


>gi|146304401|ref|YP_001191717.1| alanyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|205830147|sp|A4YH91|SYA_METS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145702651|gb|ABP95793.1| alanyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 904

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 214/825 (25%), Positives = 370/825 (44%), Gaps = 155/825 (18%)

Query: 18  NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKCVRAGGKHND 76
           NGHE++P   ++      L  T + +V F+   T G   P    +   Q C+R     +D
Sbjct: 76  NGHEIIPPKPVLARWREDLYLTIASIVDFQPYITSGISPPPANPLVVSQPCIRM----DD 131

Query: 77  LDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           +DNVG T  RH T FEM G+ +F       Y+K+  +  A +  TKE  + +  L     
Sbjct: 132 VDNVGITFGRHLTTFEMGGHHAFNYPDKFLYWKDETVAYAKEFFTKEMGIPEELL----- 186

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
                 FK                   +++W     G  GP  E+         GGL   
Sbjct: 187 -----NFK-------------------ESWWEGG--GNAGPSFEVTV-------GGL--- 210

Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI-DTGMGLERMATVLQEKTNNYDIDLF 249
                   E+  LVFMQ+E ++ +  ++  K+ I DTG G+ER+A   Q+    +   ++
Sbjct: 211 --------ELATLVFMQYEIRDGE--YVPLKLKIVDTGYGIERLAWFTQKTPTAFHA-IY 259

Query: 250 KHLIQASEQVTGM------------KYEG-------NNIVNHR----------------- 273
             L+    +  G+            ++ G       + I  HR                 
Sbjct: 260 GELVDKFLEKLGLPSLNPDMLKVASRFAGRIDPDVPSTIQGHREQVAKAMGLPVKEVSEE 319

Query: 274 --------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                    ++DH ++ + ++ DG++P++ G GY+ R ++RRA+   +LL   +  +  L
Sbjct: 320 LTRAARVFQVLDHTKTIALMLGDGLVPSSGGEGYLGRLLIRRALRTLKLLN-VDVRLSEL 378

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           +       G  + +L++ +  I + +  E E+F + L+R    +  V+S L K + +  +
Sbjct: 379 VDMQIGFWGKDFTQLVRNRDYILDAVNLEQEKFNEILNR----MSSVVSSLTKKKEIGVE 434

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
              +LYD+ G+P D+M + + ++GL      +F   +      A+ H     S   +K W
Sbjct: 435 DLIQLYDSQGIPPDLMAEEMRSKGLKVEVPHNFYSIV------AKRHQ----SAPVKKEW 484

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
            + K      + +  DL    K   +D+            N    IVK++ +        
Sbjct: 485 DTTKLPPEVVKQVK-DLPPTEKLYYKDQYA---------RNFEGVIVKSLGKY------- 527

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                  +V D+T FY E GGQLGD G  + DG R+++ D QK  + + VH  ++ER I 
Sbjct: 528 -------LVLDRTVFYPEGGGQLGDQGWLLLDGQRVKVVDTQKVGD-VVVH--VLEREIS 577

Query: 566 RTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
             E   V   ID+  R ++  +H+ TH++  A   +LG HV Q G+  TP+  R D+TH 
Sbjct: 578 AKEGDKVKGEIDWVRRFRMMRHHTGTHVVLAAAKKLLGDHVWQAGAEKTPEKARLDITHH 637

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +T  E+K IE+  N ++    PV    +NR +A      ++      ++  +  +E +
Sbjct: 638 RNLTREEVKRIEEMANLVVDDRRPVTPFEINRTEAETKYGVSIYEGGVPNKAVIRLLEIK 697

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D  V S   CGGTHV++T +I  + IV+   I+ GI R+E + G    S+    ++KL+ 
Sbjct: 698 DWDVES---CGGTHVANTADIGGIKIVNVEKIQDGIIRLEYVAGDVISSYAGNLEDKLEG 754

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           LAS L+ S   +  RVE++ EE  +++ + A  + Q  ++DL  H
Sbjct: 755 LASKLETSTSQIESRVEKLKEENERMKELIAFYRRQY-LDDLEKH 798


>gi|294495054|ref|YP_003541547.1| alanyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666053|gb|ADE35902.1| alanyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 924

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 241/967 (24%), Positives = 400/967 (41%), Gaps = 192/967 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N++ +R  +L +F+KNGH  +    +I      +  T + +  F+   T GQ  P    +
Sbjct: 59  NLAQMREFYLSYFEKNGHTRIERYPVIARWRNDIYLTIASIADFQPFVTSGQVAPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD VGR+ RH T FEM+ + +F       Y+K+R +QL  D L  
Sbjct: 119 TISQPCIRL----SDLDAVGRSGRHLTTFEMMAHHAFNKKSNEIYWKDRTVQLC-DGLLN 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +D                                +T  +  W  A  G  G C E+ 
Sbjct: 174 ELGVDP-----------------------------FAVTYKEEPW--AGGGNAGACVEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                   GGL           E+  LVFM  +Q    +  I       +    +DTG G
Sbjct: 203 I-------GGL-----------EVATLVFMNLQQSKNGDIVIKGDTYRKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY------------------------E 265
           LER+    Q     YD  +F  ++    ++ G+++                        E
Sbjct: 245 LERLVWASQGTPTVYDA-IFPEVVGELMELAGVEHRLEDEDYANILSQNARLAGLMDVSE 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
             N++  R                          I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 KANLLELRKQVASNIGITADKLGTIMEPVETAYAIADHARCITFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPL----MMHL--LPALCTEMGSAYPELIQAKLLIEETLRSE 354
            R ++RR M   + L    PL     MH+  LP         YPE      +I + L +E
Sbjct: 364 ARLVIRRTMKMMQDLDIKIPLSDIVQMHINHLPE--------YPEFADRFDVISDILDNE 415

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +++F +TL RG  L+     H  K  E +  D    +YD+HG+P +I ++     G+  +
Sbjct: 416 EKKFQETLQRGKKLIQKSAKHYKKKGEKMPLDTVIDMYDSHGIPAEISREAASEVGVE-V 474

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           ++     +L  +R     HS  +     E  +    +K   T+ + YD         E  
Sbjct: 475 ELPDNFYSLVAER-----HSKSVQEHEKEIPYADRLKKLPPTKRLFYD---------EPN 520

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           ++  +   +D+ +                          +V D T  Y E GGQ  D G 
Sbjct: 521 RMEFEAVVLDVFDN------------------------NIVLDSTLLYPEGGGQPPDHGT 556

Query: 534 AIGDGIRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
            + D   L++ DVQ   +GI +H    I +   +R    +   +D + R   + NH+ATH
Sbjct: 557 FMVDDALLKVIDVQI-FDGIVIHTIEEIEDELHIRKGDMVTGKVDEKRRMAHARNHTATH 615

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +++ A   +LG H+ Q G+    D  R D++H K I   E+  IE   N ++ +N  V++
Sbjct: 616 IINDAARQVLGEHIWQAGAQKFADRARLDISHYKRIVPEEINEIEMIANQMVMENKRVIS 675

Query: 652 RIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             M+R  A      +L   G    DR+RV+ V     G    A C GTH + TG++  + 
Sbjct: 676 EWMDRSTAEKRYGFSLYQGGVPPGDRIRVLHV-----GSDIEA-CAGTHCTFTGQVGPIK 729

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEE 766
           I+    I+ G+ RIE   G+ A      +D+ L+S A  L+V+   +   +E     W+E
Sbjct: 730 ILKTERIQDGVERIEYAAGEAAVVAFQERDKLLRSSAETLRVATEQLPTTIERFFTEWKE 789

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++K      K   +  V  L  +  ++ ++  ++  +   D+ EL  +   L     S  
Sbjct: 790 FKKENTRLKKELAESRVNQLVENAEQLKEIRLINSRVDGADADELTRMAGELA---SSDD 846

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+ + IS  + A +     +  + +  N  ++ R  A  L GGGGGG+P MA+ GG + +
Sbjct: 847 IVALLISDHEGAKIAAAAGDSAVSKGINVGNIVREIAN-LTGGGGGGKPSMARGGGQDSS 905

Query: 884 KADQAIA 890
           K D+ +A
Sbjct: 906 KIDEGLA 912


>gi|309807424|ref|ZP_07701387.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308169346|gb|EFO71401.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 236

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 111/244 (45%), Positives = 152/244 (62%), Gaps = 18/244 (7%)

Query: 22  LLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG 81
           +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ QK +R     ND++NVG
Sbjct: 2   VLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSSQKSIRT----NDIENVG 57

Query: 82  RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKL 139
           +T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD  +LY+TVY +D +A++L
Sbjct: 58  KTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDPDKLYVTVYPKDTDAYRL 117

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-------ECIPGGLPGSSE 192
           W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G       E  P   PG   
Sbjct: 118 WHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVAEDDPENFPGG-- 172

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +V+Q+   N++ DLF  +
Sbjct: 173 ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVSVIQDAPTNFETDLFMPI 232

Query: 253 IQAS 256
           I+ +
Sbjct: 233 IKQN 236


>gi|119719139|ref|YP_919634.1| alanyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|189082116|sp|A1RWQ1|SYA_THEPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119524259|gb|ABL77631.1| alanyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 907

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 232/921 (25%), Positives = 396/921 (42%), Gaps = 153/921 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S+ R  F++FF+K  H  +    ++      +    + +  F+   T G   P    +
Sbjct: 60  SLSATRKMFIDFFEKRNHTPVKRYPVVARWREDVYLVGASIYDFQPWVTEGLVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q  +R      DLDNVG+T RH T FEM+ + +F      R  ++ W   T E+   
Sbjct: 120 VISQPSIRL----TDLDNVGKTGRHLTGFEMMAHHAF----NIRDQRVYWANETVEY--- 168

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
                         AF++  K+ G+  ++I  I    + WS    G  G   E+      
Sbjct: 169 --------------AFEVLTKVYGVKPEEITFIF---DMWSGG--GNAGEDYEVIV---- 205

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                         R +E+  LVFM ++         +    +DTG GLER+  +L    
Sbjct: 206 --------------RGLEVATLVFMHYKTAEDGSLIPIENRIVDTGYGLERIYWLLTGHY 251

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------------ 271
           N Y+  +F  +I    +++G++   ++++                               
Sbjct: 252 NVYEA-VFSGVIDRLRKLSGVEKPPDDLMYRLALKSGRLDFKKPLEALETLRNVSREVGI 310

Query: 272 -----HRVI---------VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                 RV+          DH R+ ++++ DG++P+N G GY+ R ++RR++   R L  
Sbjct: 311 SFEELQRVLEPNEALYALADHTRTIAWMLGDGVVPSNSGAGYLARLLIRRSLRLLRRLQL 370

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
             PL   +L  +     + +PE ++ +  I + + +E+ERF +++ RG  +L  +L  L 
Sbjct: 371 ELPLSEIVLWQI-QYWRNDFPEYLELQDEIRDIVDTEEERFEESVKRGEKVLGALLGELK 429

Query: 378 KD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH--- 432
                ++  +   KLY++HG+P +++++   + GL   DI  F   L E RSRA+     
Sbjct: 430 SKGLRVVPAEEIVKLYESHGVPPELVKEKAESEGLEA-DITGFYSRLAEMRSRAQVQQKE 488

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           +L L    +      LKE +  T+ + Y+  + ++F      VL  K             
Sbjct: 489 ALQLPLDPSR-----LKE-FRPTRLLYYENEKLAEFEATVLGVLDGK------------- 529

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                               VV D T FY E GGQL DTG  + +G   ++    K  + 
Sbjct: 530 -------------------YVVLDSTAFYPEGGGQLSDTGVLVYEGGECRVKYAFKVGD- 569

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I VH    E         +   +D + R  L  +H+ATH++  AL ++LG HV Q G+  
Sbjct: 570 IVVHEC--EGNAPPVGARVKGVVDMERRLALMRHHTATHIVLGALRSVLGKHVWQAGAQK 627

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GT 670
           TPD +RFD TH K IT  + K+IE   N ++ ++ PV   ++NR +A  +    L   G 
Sbjct: 628 TPDYVRFDFTHHKAITPEQAKAIEALANRVVMEDRPVRKYLLNRTEAEKAFGFTLYQGGA 687

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RVV +   D     +  CGGTH   TGEI L+ I+    I+ G+ R+    G  
Sbjct: 688 VPQTTLRVVEIPGWD-----AEACGGTHCDRTGEIGLIKILGFEKIQDGVVRVVFKAGMP 742

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A  ++ G  +KLK+L   L  S   +  + + +      L+    K + +L    +S   
Sbjct: 743 ALEYVQGMGDKLKNLQEILDASYEGLEEKAKSLKSRIEALEKEVKKLREELLKGGVSVSP 802

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           +A V  +   +   D  E +    A+ +   S +I+    +   K +  + VT+DLLDR 
Sbjct: 803 VATVQGVQVYVYFSDEYEPREAALAISRTRTSSVIL----AYNSKGNFALKVTDDLLDRL 858

Query: 851 NAVDLARLSAKVLGGGGGGGR 871
           +A ++ R   + L G GGG R
Sbjct: 859 DAREIGRSVCESLRGKGGGVR 879


>gi|295839856|ref|ZP_06826789.1| alanine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827681|gb|EDY45628.2| alanine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 399

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 220/418 (52%), Gaps = 45/418 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           N   I   F  F+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +
Sbjct: 6   NTEEISRRFTGFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRL 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D
Sbjct: 66  VNVQRCLRT----TDLEEVGDPT-HLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGID 120

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TV+  D+       + ++W+++ G+  ++ +     DN+WS   TGPCGP SEI
Sbjct: 121 PGLLHTTVFGGDDRVGPDLASLEVWERL-GVPVERSV----EDNWWSNGPTGPCGPDSEI 175

Query: 176 FFDQGECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F   G+    G P S+  G ER++E+WN V M+  +        LP+ ++DTG+GLER+A
Sbjct: 176 FLWTGD----GPPESTPTGDERWVEVWNHVMMRHRRLPDGSLVPLPQRNVDTGLGLERLA 231

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           ++LQ + + +D D+F    +    + G+        + R++ DH+RS+  +I DG+ PA 
Sbjct: 232 SLLQGERSVFDGDVFAPWRRLLPPLWGL-----GETSLRLVSDHVRSAVVVIGDGVRPAA 286

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEP------LMMHLLPALCTEMGSAY--PELIQAKLL 346
            GRGYVLRR++RRA+     L  T+P      L   L+       G     PE ++  L 
Sbjct: 287 TGRGYVLRRLVRRALT---TLWRTDPSYGFGELPRELVTGTLAHFGQGEEDPETVRRVL- 342

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
              TL  E+ RF   LDRG  +L     + G    L  D    L+DTHGLP D++Q +
Sbjct: 343 --RTLGDEEARFRSLLDRGRRVL-AAPRYRGP---LTEDDLHYLHDTHGLPRDLVQSL 394


>gi|325996514|gb|ADZ51919.1| Alanyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 513

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 170/550 (30%), Positives = 275/550 (50%), Gaps = 54/550 (9%)

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           ++K ++ +    E+ERF +TL+ G+ L +  L HL +++I +G +AFKLYDT G PLD+ 
Sbjct: 3   ESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLT 62

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
            D+L + G A +D+  F   ++EQ  R++A   G  +      + ++   Y    F+GY+
Sbjct: 63  NDMLRSHG-ACVDMQGFEHCMQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYE 118

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPF 520
                                  T   S+        G + + EA   Q+V V+ ++TPF
Sbjct: 119 -----------------------TTECSAKALGFFDSGFKEMTEANPNQEVWVLLEKTPF 155

Query: 521 YAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GG +GD G  + GD     + D  K   G+      +++ + + +  +    D   
Sbjct: 156 YAEGGGAIGDKGALLKGDEEAALVLDT-KNFFGLNFSLLEIKKALKKGDQVIAQVSD--E 212

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED V
Sbjct: 213 RFEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLV 272

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I ++L      M    A   GA AL   KY + VRVVS  +++  +    LCGG HV
Sbjct: 273 NAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHV 327

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +TG I    IV ES + +G+RRIEA+ G+        ++++LK+    LK    +V+  
Sbjct: 328 ENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKILLK--NNDVIAG 385

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           + ++ E  +  Q    K  + +   DL   KI  V+ +  ++ + D KE+   +D L+ K
Sbjct: 386 INKLKESVKNSQ----KAPVPM---DLPVEKIHGVSLVVGVVEQGDIKEM---VDRLKSK 435

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +  + M+    KE +   L    ++   + NA   A   A++L GG GGGR   A +GG
Sbjct: 436 HERLLAMV--FKKENEHITLACGVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGG 490

Query: 880 PNGNKADQAI 889
            +  K   A+
Sbjct: 491 KDTEKLQAAL 500


>gi|300709606|ref|YP_003735420.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299123289|gb|ADJ13628.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 921

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 237/973 (24%), Positives = 410/973 (42%), Gaps = 193/973 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           ++  +R  FL FF+++GHE +   P ++    +D  ++ T + +  F+ + T G+  P  
Sbjct: 61  SLEEMREKFLSFFEEHGHERVEPYPVAANRWRDD--VLLTQASIYDFQPLVTSGKTPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F                  + 
Sbjct: 119 NPLTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFN--------------TRDDV 160

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D+   Y  VY +D          + L AD    IT  ++ W     G  GP  E+ + 
Sbjct: 161 PEDEYAYYGEVYWKDRTVEYCDDFFTSLGADPE-EITYIEDPWVGG--GNAGPAIEVIY- 216

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RF-ILPKMSIDTGMGL 230
                            R +E+  LVFM  EQ  + +       R+  +    +DTG GL
Sbjct: 217 -----------------RGVELATLVFMCMEQDPEGDYELKDGNRYSYMDTYIVDTGYGL 259

Query: 231 ERMATVLQEKTNNYD------IDLFKHL--IQASEQVTGMKYEGNNIVNH---------- 272
           ER   V Q     Y+      ID       I  +++   + +  + +  H          
Sbjct: 260 ERWTWVSQGTPTVYEAIYPEMIDFLTDNAGITHTDEEAALLHSASKLAGHMDIDEAEDME 319

Query: 273 ---------------------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
                                        I DH R+ ++++ DGI+P+N   GY+ R ++
Sbjct: 320 SARGEIAAGVGVDVGELEALMEPMEAVYAIADHCRTLAYMLGDGIVPSNVATGYLARMVL 379

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR       +G   PL   L+      +G       + +  I + +R+E E++ +TL+RG
Sbjct: 380 RRTKRLCDTVGVDAPLD-ELVDMQAERLG------YENRDTIRDIVRTEVEKYRETLERG 432

Query: 366 LVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA---GIDIISF--- 418
              ++ +      +DE +  +   +LYD+HG+  D++++I    G       D  S    
Sbjct: 433 GRRVEQLAEEYAQRDEPIPVEELLELYDSHGIQPDMVEEIATEAGATVEVPDDFYSLVAG 492

Query: 419 -NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            + A E  R         +    TEK+++   E+   T+F                    
Sbjct: 493 RHDAGEAMRETEERDERVVDLPDTEKLYYDDAER---TEF-------------------- 529

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       +++  ++++ E           +VV DQT FY E GGQ  D G    D
Sbjct: 530 -----------EAVILDVIERAE---------GYDVVLDQTMFYPEGGGQPADHGMISTD 569

Query: 538 GIRLQITDVQKKAEGIFVHHAI--VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                ++DVQ++ EG+ +H      E+G L     +   +D + RR+L ++H+ATH++ H
Sbjct: 570 DGSYTVSDVQER-EGVVLHRVSEEPEKGAL-----VRGRVDPERRRRLMVHHTATHIVGH 623

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           A   +LG H+ Q G+    D  R DV H   I   ++K IE   N+++  N+ V     +
Sbjct: 624 ATREVLGEHIRQAGAQKGTDSARLDVRHYDRIGREQVKEIERIANELVRDNVTVSEEWPH 683

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R +A A     L   G    +R+R++ +            CGGTHVS TG+I  + +VS 
Sbjct: 684 RNEAEAEHGFDLYQGGIPPGERIRLIHI------AEDVQACGGTHVSRTGDIGAIKVVST 737

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I+ G+ R+    G  A       ++ L   A+ L VS   V    E  +EE++     
Sbjct: 738 ERIQDGVERLTFAAGDAAIEATQETEDALYEAAAILDVSPPEVPATAERFFEEWKAR--- 794

Query: 774 HAKRKLQLNVEDLSCHKIA-----DVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIM 826
              ++++   E+L+  +       +V   + +I  V  DS EL++  +AL   ++ G + 
Sbjct: 795 --GKEIESLTEELAELRAGEGEAVEVGGTTAVIQRVDADSDELRATANAL---VEQGKVA 849

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++G S    A  ++ V E +    NA + +  L+++V GGGGG      AQ GGP+ ++ 
Sbjct: 850 VLG-SASNGAQFVVAVPEGV--GINAGEVVGTLASRVGGGGGGPA--DFAQGGGPDTDEL 904

Query: 886 DQAIAGVASFLKK 898
           D+A+A     LK+
Sbjct: 905 DEALADAPGILKE 917


>gi|148645078|gb|ABR01063.1| AlaS [uncultured Geobacter sp.]
          Length = 171

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 98/174 (56%), Positives = 121/174 (69%), Gaps = 8/174 (4%)

Query: 42  GMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           GM  FK+ F G EK  Y    + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG Y
Sbjct: 1   GMNQFKDCFLGLEKRDYLRAASSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
           FK+ AI  AW+ LT E  L + +LY+TVY +D+EA  +W +  G+  ++I R    DNFW
Sbjct: 61  FKKEAIAFAWEFLTVELGLSRDKLYVTVYTDDDEAAAIWHEQEGVPLERIYRFGEKDNFW 120

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQ 210
           SM +TGPCGPC+EIF+D G   PG   GS +     + +RY+EIWN VFMQF +
Sbjct: 121 SMGDTGPCGPCTEIFWDNG---PGTGCGSPDCAVGCDCDRYMEIWNNVFMQFNR 171


>gi|110669520|ref|YP_659331.1| alanyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689502|sp|Q18E76|SYA_HALWD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109627267|emb|CAJ53757.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 923

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 251/964 (26%), Positives = 412/964 (42%), Gaps = 175/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGH---ELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           ++S +R  FL FF+   H   E  P ++    +D  ++ T + +  F+ + T GQ  P  
Sbjct: 61  SLSGMREEFLSFFESRDHDRIEPYPVAANRWRDD--VLLTQASIYDFQPLVTSGQTPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   Q C+R      D+DNVG+T RH   FEM+ + +F                T+E 
Sbjct: 119 NPLCISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFN---------------TRED 159

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D+      VY +DE           + AD +  IT  ++ W     G  GP  E+ + 
Sbjct: 160 ASDEYAYTGEVYWKDETVRLCDAFFEHMGAD-LTEITYIEDPWVGG--GNAGPAFEVLY- 215

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RF-ILPKMSIDTGMGL 230
                            R  E+  LVFM  EQ    E       R+  +    +DTG GL
Sbjct: 216 -----------------RGAELATLVFMSMEQDESGEYEMKDGNRYSPMDTYVVDTGYGL 258

Query: 231 ERMATVLQEKTNNY-------------DIDLF-----KHLIQASEQVTGMKY--EGNNIV 270
           ER A V Q     Y             D D+      K LIQ +  ++G     E +N+ 
Sbjct: 259 ERWAWVSQGTPTVYEAVYPDTIEFLKNDADVTHTTDEKELIQQAAMLSGYLDIDEIDNLA 318

Query: 271 NHRV-------------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           + R                          I DH R+ +++  D I+P+N G GY+ R ++
Sbjct: 319 SARADVADELDVDPSVLTDLLEPLESIYAIADHYRTLAYMFGDEIVPSNVGTGYLTRMVL 378

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR       +G   PL   L+      +G       + +  I + +R+ED ++ +TL RG
Sbjct: 379 RRTQRLIDDIGIDAPLD-ELVDMQAERLG------YENRDTIRDIVRTEDRKYRETLSRG 431

Query: 366 LVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
              ++ +   +  ++E +  D   +LYD+HG+  D++ +I   RG A ++I     +L  
Sbjct: 432 RRRVETLADEYADRNESIPVDELIELYDSHGIQPDMVTEIASDRG-ATVEIPDDFYSLVA 490

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
            R     H+    + T EK    L +    T  + YD   G++F                
Sbjct: 491 DR-----HTDDDTTETIEKRRDRLAD-LPETDRLYYDDQTGTEF---------------- 528

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                ++V  I +Q             ++V DQT FY E GGQ  D G    +   ++IT
Sbjct: 529 ----EAVVLDIFEQD---------TGYDIVLDQTMFYPEGGGQPADHGTLTTEEETIEIT 575

Query: 545 DVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           DV K  +G+ +H A    G    +R ++      D + RR+L  +H+ATH++ HA   +L
Sbjct: 576 DV-KAQDGVILHQATENPGKGDFIRGQL------DVERRRRLMQHHTATHIIGHAARKVL 628

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q G+    D  RFD+TH + I   E K+IE   NDII QN+ V     +R +A  
Sbjct: 629 GDHVRQAGAQKGTDSARFDLTHYERINRIEAKTIESVANDIIRQNISVRQDWPDRHEAEN 688

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L   G      +R +++     G    A CGGTHV+ TG+I  + I++   ++ G
Sbjct: 689 EHGFDLYQGGIPPGQNIRTITI-----GDDIQA-CGGTHVTRTGDIGTIKILTTEPVQDG 742

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + RI    G  A   +   ++ L   A  L V+  +V    +  + E+++      K K 
Sbjct: 743 VERIVFAAGDAAIDAVQTTEDALYDAADVLDVTPEHVPETADRFFTEWKERGKTIDKLKS 802

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L     + ++   ++ ++ +  +I  V  D+ EL+   +A+   +    + ++G   + 
Sbjct: 803 ELAEARAQGVTADAVS-IDGIDAVIKTVNGDADELRKTANAI---VDEDAVAVLGSDVDG 858

Query: 835 KASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            A  ++ V ED+    NA D + +L+ KV GGGGG   P  AQ GGP+    + A+    
Sbjct: 859 SAQFVVGVPEDI--GINAGDVVGQLARKVGGGGGGP--PDFAQGGGPDAASLEVALDDAT 914

Query: 894 SFLK 897
           S L+
Sbjct: 915 SVLR 918


>gi|218291266|ref|ZP_03495242.1| Alanine--tRNA ligase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238814|gb|EED06026.1| Alanine--tRNA ligase [Alicyclobacillus acidocaldarius LAA1]
          Length = 243

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 136/206 (66%), Gaps = 8/206 (3%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  F +FF + GH +LPS  L+P +DPTL++ N+GM P K  F G+E P    +   QK
Sbjct: 9   IRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEVPRIVDAQK 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R     ND++ VG T RH TFFEMLGNFSFG YFK  AI  AW+ LT+  +LD  R+ 
Sbjct: 69  CIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVLELDPDRIS 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T++++D+EAF++W +  GL A +I R    DNFW + E GPCGPCSEIF+D+GE    G
Sbjct: 125 VTIHEDDDEAFEVWHRRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYDRGEAFGCG 182

Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQ 210
            P      + +R++EIWNLVF QF +
Sbjct: 183 SPDCKPGCDCDRFLEIWNLVFTQFNK 208


>gi|259015929|gb|ACV89248.1| alanyl-tRNA synthetase [Musca domestica]
          Length = 266

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/268 (42%), Positives = 153/268 (57%), Gaps = 28/268 (10%)

Query: 49  IFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK 103
           IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK
Sbjct: 2   IFLGXADPNSDMSKWLRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 61

Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRIT 155
           +     AW+ LT+   LD+ RLY+T +  DE        E  ++W  + GL A+ II   
Sbjct: 62  KEICAWAWEFLTERLGLDKDRLYVTYFGGDETSGLEPDLECKQIWMNL-GLKAEHIIPGN 120

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
             DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++  
Sbjct: 121 MKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQD 177

Query: 214 QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---- 269
                LPK  ID GMG ER+ +V+Q K +NYD D+F  L  A    TG    G  +    
Sbjct: 178 GSLKPLPKKHIDCGMGFERLVSVIQNKRSNYDTDIFVPLFDAIHVGTGCAPYGGKVGAED 237

Query: 270 -----VNHRVIVDHLRSSSFLIADGILP 292
                + +RV+ DH R+ +  +ADG +P
Sbjct: 238 VTGVDMAYRVLADHARTLTXALADGGVP 265


>gi|47210409|emb|CAF91677.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1194

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 169/301 (56%), Gaps = 50/301 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F++FF+++ H  + SS+ +P +DPTL+F N+GM  FK IF     P +  + 
Sbjct: 6   TAAQIRQKFIDFFRRHEHVYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPAH-PMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK------------------- 103
            +++      KHNDLD+VG+   HHTFFEMLG++SFG YFK                   
Sbjct: 65  KLRRAANTQKKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKVAGRAPGPGLARPPLYPAD 124

Query: 104 --------------ERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWK 141
                           A Q+A +LLT+EF +   RLY+T +  DEEA         ++W 
Sbjct: 125 GDALLRSSAPPPLQHLACQMALELLTQEFGIAIERLYVTYFGGDEEAGLEPDLECKQIWL 184

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYI 198
            + G+   +I+  +  DNFW M +TGPCGPCSE+ +D+     GG   +   + +    +
Sbjct: 185 DL-GMDEARILPGSMKDNFWEMGDTGPCGPCSEMHYDRI----GGRDAAHLVNMDDPNVL 239

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           E+WNLVF+QF ++++     LPK SIDTGMGLER+ +VLQ+K +NYD DLF    QA ++
Sbjct: 240 EVWNLVFIQFNRESETVLKPLPKKSIDTGMGLERLVSVLQDKMSNYDTDLFLPYFQAIQK 299

Query: 259 V 259
           V
Sbjct: 300 V 300



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 143/484 (29%), Positives = 219/484 (45%), Gaps = 69/484 (14%)

Query: 297 RGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           R YVLRRI+RRA+ Y+   LG        L+  +   +G A+PEL +   ++++ +  E+
Sbjct: 409 RSYVLRRILRRAVRYSHEKLGAQRGFFATLVDVVVDSLGDAFPELRKDPEMVKDVINEEE 468

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F KTL RG  +LD  +S LG  + + GD A+ LYDT+G PLD+   I   +GL+ +D+
Sbjct: 469 VQFLKTLSRGRRILDRKISSLGPSKTVPGDTAWLLYDTYGFPLDLTALIAEEKGLS-VDL 527

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F    EE+R  A+   L     +  K      E +        + LR  K        
Sbjct: 528 AAF----EEERKAAQVGPLAAPLRSQGKA--GGDEDHIMLDIYAIEDLRNRKLA------ 575

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE--AGGQLGDTGC 533
                   +T+       A  + G+ V E  S   + +  D+  F AE  +GGQ  D G 
Sbjct: 576 --------VTDDSPKYRYASDEGGKYVFEPASATVLALRRDRA-FCAEVTSGGQSFDEGF 626

Query: 534 AIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            + +    G R++ T    +  G +V H     G LR    + L +D   RR +  NH+A
Sbjct: 627 MVREDDSTGDRMEFTVKNTQVRGGYVLHVGTVYGTLRVGDQVTLHVDEARRRLIMSNHTA 686

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII------ 643
           TH+L+ AL  +LG    Q GS + PD LRFD T    +++ E++  E+    +I      
Sbjct: 687 THILNFALRGVLG-EADQRGSLVAPDRLRFDFTAKGALSTGEVRRTEEIACALIKEAKVR 745

Query: 644 -------------------AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV--- 681
                               Q +  +   + +  AI  G  A+    Y D VRVVS+   
Sbjct: 746 GAGGLGAWLLAFALSRALSPQTVYALEAPLAQAKAI-QGLRAVFDETYPDPVRVVSIGVP 804

Query: 682 --------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
                   +   G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A +
Sbjct: 805 VEELLKDPDSTAGALTSIEFCGGTHLQNSAHAAPFIIVSEEAIAKGIRRIVAVTG--AEA 862

Query: 734 HLMG 737
           H +G
Sbjct: 863 HKVG 866


>gi|313124848|ref|YP_004035112.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291213|gb|ADQ65673.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 922

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 243/972 (25%), Positives = 414/972 (42%), Gaps = 190/972 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL FF+++ HE +   P ++    +D  ++ T + +  F+ + T GQ  P  
Sbjct: 61  TIEEMREEFLSFFEEHDHERIEPYPVAANRWRDD--VLLTQASIYDFQPLVTSGQTPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F                 +E 
Sbjct: 119 NPLTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNA--------------REEV 160

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           D DQ      VY +D       +    + AD +  IT  ++ W     G  GP  E+ + 
Sbjct: 161 D-DQYAYSGEVYWKDRTVELCDEFFEHMGAD-LEEITYIEDPWVGG--GNAGPAFEVLY- 215

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RF-ILPKMSIDTGMGL 230
           QG                  E+  LVFM  EQ  + E       R+  +    +DTG GL
Sbjct: 216 QG-----------------AELATLVFMSMEQDPEGEYEMKDGNRYSPMDTYIVDTGYGL 258

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------------EGNNI 269
           ER A V Q     Y+  ++  +IQ  ++  G+                       E +++
Sbjct: 259 ERWAWVSQGTATVYEA-VYPDMIQFLKENAGISLTAEEEELVHRAAKLSGYLDIDEVDDV 317

Query: 270 VNHRV-------------------------IVDHLRSSSFLIADGILPANEGRGYVLRRI 304
              RV                         I DH R+ +++  DGI+P+N G GY+ R +
Sbjct: 318 YEARVDIADELGVDADELAELLRPLEDIYAIADHCRTLAYMFGDGIVPSNVGTGYLARMV 377

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RR       +G   PL          +M +   E  Q +  I + +R+E+ ++ +TL+R
Sbjct: 378 LRRTKRLVDSVGVDAPL------DELVDMQAERLEY-QNRDTIRDIVRTEERKYRETLER 430

Query: 365 GLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           G   +  +   +  ++E +      +LYD+HG+  D++ DI   RG A +D+     +L 
Sbjct: 431 GTRKVQSLADDYADREESIPVTELIELYDSHGIQPDMVADIAEERG-ATVDVPDNFYSLV 489

Query: 424 EQRSRARAHSLGLGSGT--------TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             R      +               TEK+++  +E+   T+F                  
Sbjct: 490 ADRHEGEGATEAAEEREERLADLPDTEKLYYDDQER---TEF------------------ 528

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         ++V  ++++ E           +VV DQT FY E GGQ  D G   
Sbjct: 529 -------------EAVVLDVIEREE---------GYDVVLDQTMFYPEGGGQPADHGTIS 566

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            D   +Q++DVQ + +G+ +H    + G    +R ++      D + RR+L  +H+ATH+
Sbjct: 567 TDDKTVQVSDVQIR-DGVVLHRTDEDPGKGEFVRGQL------DVERRRRLMRHHTATHV 619

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + HA   +LG H+ Q G+    D  RFD+TH + IT  E+K IE   N+I+ QN+ V   
Sbjct: 620 VGHAARQVLGDHIRQAGAQKGTDRARFDITHYERITREEVKQIEQVANEIVMQNIAVKQE 679

Query: 653 IMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +R +A       L   G      +RV++V     G    A CGGTHV  TG+I  + I
Sbjct: 680 WPDRHEAEDKYGFDLYQGGIPPGRNIRVITV-----GDDVQA-CGGTHVKRTGDIGSIKI 733

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++   ++ GI RI    G  A       ++ L   A  L V+  +V    E  + E+++ 
Sbjct: 734 LTTEPVQDGIERIVFAAGDAAIEATQETEDALYEAAEVLDVNPEDVPDTAERFFTEWKER 793

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIML 827
            + I   +         +  +  DV+    ++  +  D+ EL++  +A+   +  G + +
Sbjct: 794 GKTIDRLKSELAEARAAAETEEIDVSGTPAVVQRLDGDADELRATANAI---VDEGKVAV 850

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +G +    A  ++ V +++    NA + + +L+A V GGGGG   P  AQ GGPN  K D
Sbjct: 851 LGSAAGGSAQFVVGVPDNV--GINAGEVVGQLAASVGGGGGGP--PDFAQGGGPNVEKLD 906

Query: 887 QAIAGVASFLKK 898
           + +      L++
Sbjct: 907 ETLDEAPDVLRQ 918


>gi|331694168|ref|YP_004330407.1| Alanine--tRNA ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326948857|gb|AEA22554.1| Alanine--tRNA ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 463

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 241/471 (51%), Gaps = 53/471 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  +L+  ++  H ++  + L+  +DPT +FT SGM P      G E P    + 
Sbjct: 2   DARAIRQAYLDLLREQRHAVIERAPLVLRDDPTTLFTGSGMQPLLPYLLGAEHPDGARLA 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RA     D+D VG  NRH TFFEMLGN+S G Y K   I + W  L     LD 
Sbjct: 62  DVQPCLRA----QDMDEVG-DNRHTTFFEMLGNWSLGDYSKAEQIPMVWYFLVDVVGLDP 116

Query: 123 RRLYITVY--------DEDEEAFKLWKKI---SGLSADKI-----------------IRI 154
            R+Y+T +          D+E+  +W+++    G+S D+I                 I  
Sbjct: 117 ERIYVTAFIGDSAHGIPRDDESADIWERLFRERGISFDRIDLDTEEYGNEVGNQGARIAF 176

Query: 155 TTNDNFWS-------MAETGPCGPCSEIF--FDQGE--CIPGGLPGSSEEGERYIEIWNL 203
             + N+WS       M    P GP SEIF  F Q E     G  P  + +G +++EI N 
Sbjct: 177 YGHKNWWSRFGGPDEMPVEDPGGPDSEIFYYFPQVEHDTAYGRYPHQNSDGGQFLEIGNS 236

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           V M + ++ +     LPK ++D G GLER+A    +  + Y + L   +++  ++VTG  
Sbjct: 237 VSMTY-RRTETGVVDLPKHNVDFGGGLERIAAAAIDSPDVYHVSLLWPMVEQLQKVTGKS 295

Query: 264 YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
           Y        RV+VDHLR + FL ADG+ P+N  +GYV+RR++RRAM +   LG T  +  
Sbjct: 296 Y-AEATTAMRVVVDHLRGAVFLAADGVRPSNSKQGYVMRRLLRRAMRFGLDLGLTAGVAA 354

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-IL 382
            L+P + +     YPE+   +  I   +  E++ F +TL +GL +    +  LG+ +  +
Sbjct: 355 ELVPVVASVYSDVYPEIAAGEADIVAVIAKEEKLFARTLRKGLSM----VRRLGRTQPAI 410

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI--ISFNQALEEQRSRARA 431
           +G   F+L+DT G+P+++  +    +G+A  +     F+  ++ Q++R+RA
Sbjct: 411 SGAHLFELHDTFGMPIELSVEEAHRQGIALEETWQADFDALMDAQKARSRA 461


>gi|302348046|ref|YP_003815684.1| Alanyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328458|gb|ADL18653.1| Alanyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 913

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 240/928 (25%), Positives = 395/928 (42%), Gaps = 166/928 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61
            V+  R  F++FF ++GH  +    ++      L  T + +V F+ ++ +G   P    +
Sbjct: 58  TVAEARRKFIDFFARHGHTPIQPRPVVARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  ++ A++  T
Sbjct: 118 VISQPCIRL----EDIDNVGLTIGRHLTTFEMAAHHAFNYPDKQVYWKDETVRYAYEFFT 173

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  D I+     +++W     G  GP  E+
Sbjct: 174 KEL--------------------------GIPGDLIV---FKESWWEGG--GNAGPSFEV 202

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                    GGL           E+  LVFMQ++         LP   +DTG G+ERMA 
Sbjct: 203 TV-------GGL-----------ELATLVFMQYKIDENGNYVELPLKIVDTGYGVERMAW 244

Query: 236 VLQEKTN-------------------------------------NYDID-LFKHLIQASE 257
             Q+                                        N D++       Q   
Sbjct: 245 FTQKTPTAFHAIYGQLLDKARSELGLPRPPEEYLWAAFRAAAKFNPDVEGSLDAFYQQVS 304

Query: 258 QVTGMKYEGNNIVNHR-----VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           + TG        V  R      ++DH ++ + ++ DG++P+N G GY+ R ++RRA+   
Sbjct: 305 KTTGAPLSEVRQVLEREARLYSVLDHSKTIAMMLGDGVVPSNSGEGYLARLVIRRALRQL 364

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL     L   ++       GS +P+L + +  I E +  E++R+   L RG  L+   
Sbjct: 365 RLLNENYDLA-KIVDMQIDLWGSDFPQLKENRSYIIEAVGLEEDRYKDLLRRGEKLVLRE 423

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE-EQRSRARA 431
           LS     E L      KLYD++G+P ++  +    +G+  +   +F   +    R+ A+ 
Sbjct: 424 LSQGASLETL-----IKLYDSYGIPPEVAAEAAAKKGITVLVPRNFYSLVAARHRAPAKV 478

Query: 432 HSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
            S+   S   E +  W        A QF   +LL    F K+                 S
Sbjct: 479 RSIEEKSSLPEDVVSW--------ARQFKPTELL----FHKD-------------PYARS 513

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
              K +  +GE V           V D T FYA  GGQL D G     G R  + DVQK 
Sbjct: 514 FTAKILGVKGEYV-----------VLDSTIFYATGGGQLNDVGVMEICGERYNVVDVQKA 562

Query: 550 AEGIFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
            + + VH   ++R +           ID+  R +L  +H+ATH++  A   +LG+HV Q 
Sbjct: 563 GD-VIVHK--LDRAVDNASCGEARGEIDWVRRFRLMRHHTATHIILGAARRVLGNHVWQA 619

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  R D+TH KP+T  E++ IE+  N +I +  PV+   M+R +A +     L 
Sbjct: 620 GAEKTPEKARLDITHHKPLTREEVRRIEELANRVIDERRPVLQAYMDRNEAESKYGFVLY 679

Query: 669 --GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G     ++RVV V+  D        C GTHV++TG+I  + I++   I+ G+ R+E +
Sbjct: 680 EGGVPMERKIRVVEVQGWD-----VEACFGTHVTNTGDIGGIKIINVEKIQDGVVRLEFV 734

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKRKLQLNVED 785
            G R    +   ++++  L+S L    G  + +V+E+ +E  KL + + A R L L+   
Sbjct: 735 AGTRVPEEMAALEDRMTQLSSELGSQGGEELNKVKELKDELMKLKESVKAYRSLWLSTAK 794

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI--IMLVGISKEKKASVLIVVT 843
                 + VN +     E    ++KS  DAL++     I  ++ V + ++K     + + 
Sbjct: 795 -GLIVSSKVNGLIVATLEYPEPDVKSARDALKELTDEFINSVITVAVKEDKGYRYELGIG 853

Query: 844 EDLLDRFNA-VDLARLSA--KVLGGGGG 868
            +     +A   LA +S+  KV GGG G
Sbjct: 854 REASRILSAEAILAAISSELKVTGGGRG 881


>gi|240102368|ref|YP_002958676.1| alanyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239909921|gb|ACS32812.1| Alanyl-tRNA synthetase (alaS) [Thermococcus gammatolerans EJ3]
          Length = 913

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 246/965 (25%), Positives = 420/965 (43%), Gaps = 181/965 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+  + +G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           ED                    IT  +N W  A  G  GP  E+ 
Sbjct: 174 ELKMKP---------ED--------------------ITFKENPW--AGGGNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER----------FILPKMS--I 224
           +                  R +E+  LVFMQ+++  +             + +P  +  +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDYYVPMETKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV-------- 274
           DTG GLER+  +       YD  +  ++I+  +++ G++     I+  N R+        
Sbjct: 245 DTGYGLERLVWMSHGTPTAYDA-VLGYVIEPLKKMAGVEKIDERILMENSRLAGMFDIED 303

Query: 275 ----------------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLRYLREQVAKRVGITVEELEKAVRPYELIYAIADHTKALTFMLADGVIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   PL   ++     E+   +PE  + + +I + +  E++R+ +
Sbjct: 364 ARLLIRKSIRHLRELGLEVPLA-EIVAMHIKELSPTFPEFKEMEDVILDIINVEEKRYHE 422

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+      +F
Sbjct: 423 TLKRGSDLVRREIAKLKKKGINELPLEKLILFYESHGLTPEIVAEVAQKEGIKVEIPDNF 482

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +Q  +            TEK       K  A   + ++L++    + E R +  +
Sbjct: 483 YTLVAKQAEK------------TEK-------KTVAEYVVDFELVKD---LPETRTLYYE 520

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
            P +   +  + +VK I                 VV +QT FY E GGQ  DTG    DG
Sbjct: 521 DPFMKEFD--AEVVKVIDDW--------------VVLNQTAFYPEGGGQPYDTGTLEVDG 564

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++T+VQK  + I   H + +  + +    +   +D+  R Q   +H+ TH+L  AL 
Sbjct: 565 EEVRVTNVQKVGKVIL--HRVDKPELFKKGAKVHGKLDWDRRIQHMRHHTGTHVLMGALV 622

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + R +
Sbjct: 623 RVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLPRTE 682

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +RVV +  ED  V +   CGGTH+ +TG I  + I+    I
Sbjct: 683 AEMKYGFRLYQGGVVPGRTIRVVKI--EDWDVQA---CGGTHLPNTGLIGPIKILRTERI 737

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLI 773
           + G+ RI    G+ A   +   +  LK  A   +V    V    E     W+E RK    
Sbjct: 738 QDGVERIIFAAGEAAIDWMQETERLLKKTAEIFRVPPEKVPETAERFFNEWKEARKEVEK 797

Query: 774 HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             K   +L V +L     K+ D+ F+  ++ E    +L+   + L+K+ +    ++V IS
Sbjct: 798 LRKELAKLLVYELENKVEKVGDIEFIGAVV-EGTMNDLREAANRLRKEKR----VVVLIS 852

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +E      +V   D LD   A +LA++   V  GGGGGGR  +AQ    N  KA++AI  
Sbjct: 853 REGH---FVVAVGDGLD-LKAGELAKIITSV-AGGGGGGRKELAQGRIKNPLKAEEAIEE 907

Query: 892 VASFL 896
           V   L
Sbjct: 908 VKRRL 912


>gi|259015927|gb|ACV89247.1| alanyl-tRNA synthetase [Tipula abdominalis]
          Length = 268

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 158/271 (58%), Gaps = 29/271 (10%)

Query: 49  IFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK 103
           IF G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK
Sbjct: 2   IFLGTADPNSDMAKWVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFK 61

Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRIT 155
                 AW+LLT    L   RLY+T +        + D E  ++W ++ G+  + I+  +
Sbjct: 62  REICTWAWELLTDRLKLPSERLYVTYFGGDAASGLEPDLECRQIWLEL-GIKPEHILPGS 120

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQ---GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN 212
             DNFW M ETGPCGPCSE+ FD+   G  +P  +   +++    +EIWNLVF+QF ++ 
Sbjct: 121 MKDNFWEMGETGPCGPCSELHFDRIGGGRSVPELV---NQDDPDVLEIWNLVFIQFNREP 177

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----- 266
                +LPK  ID GMG ER+ +V+Q+K +NYD DLF  +  A ++ TG   Y+G     
Sbjct: 178 DSSLRLLPKKHIDCGMGFERLVSVIQDKRSNYDTDLFVPIFDAIQKGTGAPPYQGRVGAE 237

Query: 267 --NNI-VNHRVIVDHLRSSSFLIADGILPAN 294
             + I + +RV+ DH R+ +  ++DG  P N
Sbjct: 238 DADGIDMAYRVLADHARTLTIALSDGGYPDN 268


>gi|298675228|ref|YP_003726978.1| alanyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288216|gb|ADI74182.1| alanyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 922

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 239/966 (24%), Positives = 406/966 (42%), Gaps = 194/966 (20%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           ++ +R  FL+FF+K  H  +    +       +  T + +  F+   T GQ  P    +T
Sbjct: 60  LNEMREQFLKFFEKRDHARVNRYPVTAVWREDIHLTIASIANFQPFVTSGQVPPPANPLT 119

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q CVR     +DLD VGR+ RH T FEM+ + +F       Y+KE  + L  + L   
Sbjct: 120 ISQPCVRL----SDLDAVGRSGRHLTLFEMMAHHAFNTTDNEVYWKEETVALCDEFL--- 172

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                     + L  D +  +T  +  W  A  G  GPC E   
Sbjct: 173 --------------------------NSLGVDPLA-VTYKEEPW--AGGGNAGPCLETLV 203

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMS---IDTGMGL 230
                  GGL           E+  LVFM  +Q    +  I      KM+   +DTG GL
Sbjct: 204 -------GGL-----------EVATLVFMNLKQSKDGDIIIDGEPYEKMNNYIVDTGYGL 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY------------------------EG 266
           ER+    +     YD  +F  ++    +  G+++                        E 
Sbjct: 246 ERLVWASKGTPTIYDA-IFPSIVNELMEYAGLEHELEDSEYSELLSQNARFAGLMDVSEK 304

Query: 267 NNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYVL 301
            N+   R                          I DH R  +F++ DG++P+N   GY+ 
Sbjct: 305 ANLKELRKQVAESIGTSIEKLTSIMEPVEKVYAIADHTRCLTFMLGDGVVPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGY----TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           R + RR     R LG     ++ + MH+      +    YPE      LIE+ ++ E+++
Sbjct: 365 RLVFRRTTRMMRELGMDISISDIIRMHI------DKLQEYPEFEDRFDLIEDIIQHEEDK 418

Query: 358 FGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           F +TL+RG+ ++  +     K +E +  D   ++YD+HG+P +I +D+    G+      
Sbjct: 419 FEETLNRGIKMIQKMAKQYKKQNEKIPLDKLIEMYDSHGIPPEIAEDVASDMGVEVELPD 478

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   + E+ S A+           EK  F  +E+   ++     LL    F  E  ++ 
Sbjct: 479 NFYSIVAERHSMAKE---------KEKPSFPFEER--ISKLPQTKLL----FYNEPNRME 523

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            +   +D+ +                          +V D+T FY E GGQ  D G  I 
Sbjct: 524 FEAVVLDVFDNY------------------------IVLDRTLFYPEGGGQPADKGVIIA 559

Query: 537 DGIRLQITDVQKKAEGIFVHH--AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           D    ++ DV K  + + +H   ++     LR    +   ID + R   + +H+ATH+++
Sbjct: 560 DDETAKVVDV-KNIKNVVLHEIDSVGNEISLRKGDLVTCKIDSERRASHAKHHTATHIVN 618

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A   +LG+H+ Q G+    D  R D++H K I   E+K IE   N  + +N  VVT  +
Sbjct: 619 DAAKKVLGTHIWQAGAQKFEDRARLDLSHYKRIKRDEIKRIELIANGTVMENKRVVTEWV 678

Query: 655 NREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           NR +A       +   G     ++R++ V     G    A CGGTH S TG +  + I+ 
Sbjct: 679 NRNNAEKRYGLNVYQGGVPPGKKLRILKV-----GDDIEA-CGGTHCSYTGYVGPIKILK 732

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
              I+ G+ R+E   G+ A   +   ++ L+  +  L+V   ++   +E  +EE+++   
Sbjct: 733 SERIQDGVERLEFSAGEAAVKSMQEIEDTLQDSSGALRVLPEHLPNTIERFFEEWKQFKK 792

Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGI 824
                +   A  ++Q  ++D   H   D N  ++  + + DSKEL+ +   L K   S I
Sbjct: 793 ENEKLKEELADIRVQQMMQDAITH---DGNHIIAQKVPDSDSKELQKMAGELVKN-NSTI 848

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            +L  IS      +    ++D ++   N  D+ +  + ++ GGGGGGRP MAQ GG   +
Sbjct: 849 ALL--ISDYNGVKIAAAASKDAVNNGINVGDVVKEISSIV-GGGGGGRPDMAQGGGTETS 905

Query: 884 KADQAI 889
           + D+A+
Sbjct: 906 RIDEAL 911


>gi|148645080|gb|ABR01064.1| AlaS [uncultured Geobacter sp.]
          Length = 171

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/171 (55%), Positives = 118/171 (69%), Gaps = 2/171 (1%)

Query: 42  GMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           GM  FK+ F G EK  Y    + QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG Y
Sbjct: 1   GMNQFKDCFLGLEKRDYVRAASSQKCVRAGGKHNDLEIVGRTARHHTFFEMLGNFSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
           FK+ AI  AW+ LT +  LD+ RLY+TVY ED+EA ++W    G+  ++I R    DNFW
Sbjct: 61  FKKEAIAYAWEFLTVDLGLDKERLYVTVYTEDDEAAEIWHTQEGVPRERIYRFGEKDNFW 120

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQ 210
           SM + GPC PC+EIF+D G  +  G P  +   + +RY+EIWN VFMQF +
Sbjct: 121 SMGDAGPCHPCTEIFWDNGPEVGCGSPDCAVGCDCDRYMEIWNNVFMQFNR 171


>gi|255528012|ref|ZP_05394849.1| Alanine--tRNA ligase [Clostridium carboxidivorans P7]
 gi|255508281|gb|EET84684.1| Alanine--tRNA ligase [Clostridium carboxidivorans P7]
          Length = 217

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 99/211 (46%), Positives = 135/211 (63%), Gaps = 11/211 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P    VTT
Sbjct: 6   LNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPKTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE AI  AW+  T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG--- 180
           +LY+T+Y +D+EA  LW K + +   +I R+  +DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHG-IGPCGPCSEIHFDRGNEK 180

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ 210
              +   L  + E  +R +E WNLVF QF++
Sbjct: 181 INTVEEFLKAADE--DRVVEFWNLVFTQFDK 209


>gi|169835836|ref|ZP_02869024.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 326

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 189/334 (56%), Gaps = 22/334 (6%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + I+   R+ +  NH+ATH+LH  L   LG+HV Q+GS +  + LRFD +H + I    +
Sbjct: 1   MKINADRRKDIQRNHTATHILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAIEPEMI 60

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + IE  VNDII  NL V     N EDA   GA AL   KY D VRVV +   DG  +S  
Sbjct: 61  EKIEKAVNDIILSNLKVKIDFENIEDAKKRGAMALFSDKYGDVVRVVEI---DG--YSIE 115

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGG HV STGEI L  I SES I +G RRI A TG  +  ++   +EKL  +A  LK  
Sbjct: 116 LCGGAHVKSTGEIGLFNIESESGIASGTRRITATTGHASLKYVNNLEEKLSKVAGMLKTD 175

Query: 753 QGNVVGRVEE-------IWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADVNFMSHIIS 802
             NVV  VE+       I +EY +LQ    K    +L  NV++++  K+    F +    
Sbjct: 176 GKNVVDVVEKYIAEAKNIVKEYEQLQTKLVKYEINELLENVDEINGVKVLKAAFENK--- 232

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
             D  ELK ++D  ++K+QSGII+L G +   KA  ++ VT+DL+ +  A ++ +++A+V
Sbjct: 233 --DVNELKEIVDRGKEKLQSGIIIL-GTNNGGKAIFVVGVTKDLISKVKAGEIVKVAAQV 289

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             GG GGGRP  AQ+GG +GN   +A+     F+
Sbjct: 290 -AGGNGGGRPDFAQAGGKDGNAVKEAVDKAFEFV 322


>gi|15791093|ref|NP_280917.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236845|ref|YP_001690045.1| alanyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|22096204|sp|Q9HN24|SYA_HALSA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830064|sp|B0R7I0|SYA_HALS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10581694|gb|AAG20397.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|167727911|emb|CAP14699.1| alanine--tRNA ligase [Halobacterium salinarum R1]
          Length = 929

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 250/968 (25%), Positives = 414/968 (42%), Gaps = 180/968 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVY 58
           +++ +R+  + +F++ GH+ +   P ++    +D  ++ T + +  F+ ++ +G   P  
Sbjct: 61  SLTEMRSAMVSYFERAGHDSIDPYPVAANRWRDD--VLLTQASIYDFQPHVTSGASPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   Q C+R      D+DNVG+T RH   FEMLG+ +F     +     A+D      
Sbjct: 119 NPLVVSQPCIRM----QDIDNVGKTGRHTMAFEMLGHHAFNA---DEGTDYAYDG----- 166

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKIS-----GLSADKIIRITTNDNFWSMAETGPCGPCS 173
                     VY         WK  +     GL AD  + +                   
Sbjct: 167 ---------EVY---------WKDTAVEHCEGLLADVGVSL------------------D 190

Query: 174 EIFFDQGECIPGGLPGSSEEG-ERYIEIWNLVFM--------QFEQQNKQERFILPKMSI 224
           E+ F +   + GG  G++ E   R +E+  LVFM        ++E ++      + +  +
Sbjct: 191 EVTFIEDPWVGGGNAGAAFEVIYRGLELATLVFMSLERDPDGEYEMKDGHTYAEMDRRVV 250

Query: 225 DTGMGLERMATVLQEKTNNYD------IDLFK------HLIQASEQV-TGMKYEGN---- 267
           DTG G+ER   + Q     Y+      ID  K      H  + +E V    K+ GN    
Sbjct: 251 DTGYGVERWTWMSQGTPTVYEAVYPDTIDFLKEQAGIEHTDEEAELVHRASKHAGNLDID 310

Query: 268 ---NIVNHRV-------------------------IVDHLRSSSFLIADGILPANEGRGY 299
              +I + R                          I DH R  +++  DGI+P+N G GY
Sbjct: 311 EVADIEDARAGIAAELGVDAERLTELVAPLEDIYAIADHSRVLAYMFGDGIVPSNVGTGY 370

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR       +G   PL   L+      +G       + +  I   +RSE E++G
Sbjct: 371 LARMVLRRTKRLVDDIGADVPLD-ELVDMQADRLG------YENRDTIRSIVRSEVEKYG 423

Query: 360 KTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           +TL+RG   ++ +   +  + E +  D   +LYD+HG+   ++ DI    G A +D    
Sbjct: 424 ETLERGGRRVEQLAEEYADRGEPVPTDELIELYDSHGIQPGMVADIAADVG-ATVDAPDD 482

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             +L   R          G G  +     L E    T+ + YD   GS+F          
Sbjct: 483 FYSLVAARHDDGDSGAAGGDGGGDDRLADLPE----TETLYYDDAYGSEFE--------- 529

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + ++    ++GE  + A      +VV DQT FY E GGQ  DTG   GD 
Sbjct: 530 ----------AVVLDVFEREGEDGDGAF-----DVVLDQTMFYPEGGGQPADTGVLTGDD 574

Query: 539 IRLQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             + + DVQ++ +G+ +H      G    +R +      ID + RR+L  +H+ATH++ +
Sbjct: 575 HTVDVIDVQER-DGVVLHRTTDNPGKGEFVRGQ------IDTERRRRLMAHHTATHIVVY 627

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           A   +LG HV Q G+    D  R DVTH + +    +K IE   N+I+  N  V     +
Sbjct: 628 AARQVLGEHVRQAGAQKGVDSSRIDVTHYERVDRETVKEIERVANEIVRANTSVQCEWPD 687

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R +A A     L   G    +++R+V V   D  V +   CGGTHV+ TGEI  + I++ 
Sbjct: 688 RHEAEAEYGFDLYQGGIPAGEQIRLVHV---DDDVQA---CGGTHVARTGEIGSIKILNA 741

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             ++ G+ R+    G  A  H+ GQ++ L++ A  L V+   V    E  + E++     
Sbjct: 742 ERVQDGVERLTFAAGAAAVEHVQGQEDDLRAAAEVLDVTPAEVPETAERFFTEWKDRGKT 801

Query: 774 HAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLV 828
               K QL     S     +  DV   + ++  VD    EL++  +AL   +  G + +V
Sbjct: 802 IDDLKEQLAEARASGGGAGEEVDVAGTTAVVQRVDGDMDELQATANAL---VDGGQVAVV 858

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G S    A  ++ V + +      V +  L+A V   GGGGG P  AQ GGP+  + D A
Sbjct: 859 G-SGADGAQFVVGVPDGVPVNAGEV-VGELAAMVG--GGGGGPPDFAQGGGPDAERLDDA 914

Query: 889 IAGVASFL 896
           ++  A  L
Sbjct: 915 LSRAADVL 922


>gi|254574772|pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain
 gi|254574773|pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
           Oligomerization Domain
 gi|254574774|pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
           Oligomerization Domain
          Length = 752

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 203/793 (25%), Positives = 342/793 (43%), Gaps = 176/793 (22%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKN-IFTGQEKP 56
            +  +R  FL FF+K  HE+ P        ++P     ++   + ++ F+  + +G+  P
Sbjct: 58  TLDEMREKFLRFFEK--HEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADP 115

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAW 111
               +   Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA+
Sbjct: 116 PANPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAF 171

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +  TKE  +           ED                    IT  +N W  A  G  GP
Sbjct: 172 EFFTKELKMKP---------ED--------------------ITFKENPW--AGGGNAGP 200

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-----------KQERFI-L 219
             E+ +                  R +E+  LVFMQ+++             K E++I +
Sbjct: 201 AFEVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPM 242

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV--- 274
               +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+  N R+   
Sbjct: 243 ETKVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILMENSRLAGM 301

Query: 275 ---------------------------------------IVDHLRSSSFLIADGILPANE 295
                                                  I DH ++ +F++ADG++P+N 
Sbjct: 302 FDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNV 361

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E+
Sbjct: 362 KAGYLARLLIRKSIRHLRELGLEVPL-SEIVALHIKELHKTFPEFKEMEDIILEMIELEE 420

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA--FKLYDTHGLPLDIMQDILCARGLAGI 413
           +++ +TL RG  L+   ++ L K  I    V      Y++HGL  +I+++I    G+   
Sbjct: 421 KKYAETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVN 480

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-D 472
              +F   + ++  R +           E + F L +    T+ + Y+      FMKE D
Sbjct: 481 IPDNFYSMVAKEAERTKEEK------GEELVDFELLKDLPDTRRLYYE----DPFMKEFD 530

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            KVL              ++K                   V+ D T FY E GGQ  DTG
Sbjct: 531 AKVL-------------RVIKDW-----------------VILDATAFYPEGGGQPYDTG 560

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I +G  +++T+VQK   G  + H + + G  +  M +   ID++ R Q   +H+ TH+
Sbjct: 561 VLIVNGREVKVTNVQKV--GKVIIHKVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHV 618

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS +T D  R D++H K I+  ELK IE   N I+ ++  V   
Sbjct: 619 LMGALVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWE 678

Query: 653 IMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            + R  A       L   G      +RVV +  ED  V +   CGGTH+ STG +  + I
Sbjct: 679 WLPRTTAEQKYGFRLYQGGVVPGREIRVVKI--EDWDVQA---CGGTHLPSTGLVGPIKI 733

Query: 711 VSESSIRAGIRRI 723
           +    I+ G+ RI
Sbjct: 734 LRTERIQDGVERI 746


>gi|218678871|ref|ZP_03526768.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 133

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 110/133 (82%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTESFDL 120

Query: 121 DQRRLYITVYDED 133
            + RL +TVY ED
Sbjct: 121 PKHRLLVTVYSED 133


>gi|254173402|ref|ZP_04880075.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214032811|gb|EEB73640.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 913

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 247/965 (25%), Positives = 419/965 (43%), Gaps = 181/965 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+  + +G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           ED                    IT  +N W  A  G  GP  E+ 
Sbjct: 174 ELKMKP---------ED--------------------ITFKENPW--AGGGNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER----------FILPKMS--I 224
           +                  R +E+  LVFMQ+++  +             + +P  +  +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDYYVPMETKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV-------- 274
           DTG GLER+  +       YD  +  ++I+  +++ G++     I+  N R+        
Sbjct: 245 DTGYGLERLVWMSHGTPTAYDA-VLGYVIEPLKKMAGVEKIDERILMENSRLAGMFDIED 303

Query: 275 ----------------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLRYLREQVAKRVGISVEELEKAIRPYELIYAIADHTKALTFMLADGVIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   PL   ++     E+   +PE  + + +I + +  E++R+ +
Sbjct: 364 ARLLIRKSIRHLRELGLEVPLA-EIVAMHIKELSPTFPEFKEMEDVILDIINVEEKRYHE 422

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+      +F
Sbjct: 423 TLKRGSDLVRREIAKLKKRGINELPLEKLILFYESHGLTPEIVAEVAQKEGIKVEIPDNF 482

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +Q  +    + G        + F L +    T+ + Y+      FMKE       
Sbjct: 483 YTLVAKQAEKTEKKTAG-----EYVVDFELVKDLPDTRTLYYE----DPFMKE------- 526

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               D     + +VK I                 VV +QT FY E GGQ  DTG    +G
Sbjct: 527 ---FD-----AEVVKVIDDW--------------VVLNQTAFYPEGGGQPYDTGTLEVNG 564

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++T+VQK   G  + H +    + +  + +   +D+  R Q   +H+ TH+L  AL 
Sbjct: 565 EEVKVTNVQKV--GKVILHRVERPELFKPGVKVHGKLDWDRRIQHMRHHTGTHVLMGALV 622

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + R +
Sbjct: 623 RVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLPRTE 682

Query: 659 A-IASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A +  G     G     RV RV+ +  ED  V +   CGGTH+ +TG I  + I+    I
Sbjct: 683 AEMKYGFRLYQGGVVPGRVIRVLKI--EDWDVQA---CGGTHLPNTGLIGPIKILRTERI 737

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLI 773
           + G+ RI    G+ A   +   +  LK  A   +V    V    E     W+E RK    
Sbjct: 738 QDGVERIIFAAGEAAIDWMQETERLLKKTAEIFRVPPEKVPETAERFFNEWKEARKEVEK 797

Query: 774 HAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             K   +L V +L     K+ D+ F+  ++ E    +L+   + L+K+ +    ++V IS
Sbjct: 798 LRKELAKLLVYELENRVEKVGDIEFIGAVV-EGTMDDLREAANRLRKEKR----VVVLIS 852

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +E      +V   D LD   A +LA++   V  GGGGGGR  +AQ    N  KA++AI  
Sbjct: 853 REGH---FVVAVGDGLD-LKAGELAKIITSV-AGGGGGGRKELAQGRIKNPLKAEEAIEE 907

Query: 892 VASFL 896
           V   L
Sbjct: 908 VKKRL 912


>gi|330834452|ref|YP_004409180.1| alanyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566591|gb|AEB94696.1| alanyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 903

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 206/831 (24%), Positives = 372/831 (44%), Gaps = 152/831 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S  R  FL+FF++NGHE++    ++      L  T + +V F+   T G   P    +
Sbjct: 61  SMSEARRKFLDFFRRNGHEVIQPKPVLARWREDLYLTIASIVDFQPYITSGVSPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R     +D+DNVG T  RH T FEM G+ +F       Y+K+  +  A +  T
Sbjct: 121 VISQPCIRM----DDVDNVGITFGRHLTTFEMGGHHAFNYPDKFIYWKDETVAYAKEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E  + +  L           FK                   +++W     G  GP  E+
Sbjct: 177 EEMKIPEELL----------NFK-------------------ESWWEGG--GNAGPSFEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI-DTGMGLERMA 234
                    GGL           E+  LVFMQ+E +  Q  ++  K+ I DTG G+ER+A
Sbjct: 206 TV-------GGL-----------ELATLVFMQYEIKGDQ--YVPLKLKIVDTGYGIERLA 245

Query: 235 TVLQEKTNNYD------IDLFKHLIQASEQVTGM-----KYEG-------NNIVNHR--- 273
              Q+   ++       +D F   +       G+     +Y G       + +  HR   
Sbjct: 246 WFTQKTPTSFHAIYGELVDKFVGKLNMPRLDNGILKVASRYAGRIDPDLPSTVEEHRRQV 305

Query: 274 ----------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  ++DH ++ S ++ DG++P++ G GY+ R ++RRA+  
Sbjct: 306 AQTLGLPVKEVSDELTRAARVFQVLDHTKTISLMLGDGLVPSSGGEGYLGRLLIRRALRT 365

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            +LLG  +  +  L+       G  + +L + +  I + +  E E+F + L +    +  
Sbjct: 366 LKLLG-IDVRLSELVEMQIEFWGKDFTQLYRNRDYIIDAVNLEQEKFREVLTK----MTA 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           V +   + + +  +   +LYD+HG+P D++ D L ++GL  ++I     ++  +R +   
Sbjct: 421 VANSFAQRKDVGVEDLIRLYDSHGIPPDLIADELRSKGLK-VEIPHNFYSIVAKRHQ--- 476

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                 S   +K W + K        +  +++   K ++   KV  Q        G   +
Sbjct: 477 ------SAPVKKEWETTK--------LPLEVVNQVKDLEPTEKVYYQDQYARKFEG--KV 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +K+I +               +V ++T FY E GGQLGD G       R+++ D QK  E
Sbjct: 521 IKSIGKY--------------LVLNRTVFYPEGGGQLGDQGWITIGNERIKVVDTQKVNE 566

Query: 552 GIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            + VH  ++ER + L+   ++   ID+  R ++  +H+ATH++  A   +LG HV Q G+
Sbjct: 567 -VVVH--VMEREVDLKGNETVQGEIDWVRRFRMMRHHTATHVILAAAKKLLGDHVWQAGA 623

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
             TP+  R D+TH K ++  ++  +E   N +I    PV    +NR +A      ++   
Sbjct: 624 EKTPEKARLDITHHKNLSEEDIIKLEHMANQVIDDRRPVTPFEINRTEAELKFGVSIYEG 683

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
              ++  +  ++ +D  V S   CGGTHVS+T +I  + I++   I+ GI R+E + G  
Sbjct: 684 GVPNKPTLRLLDIKDWDVES---CGGTHVSNTADIGGVKIINVEKIQDGIIRLEYVAGDV 740

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
              +    ++K+ SLAS L+ S   +  R+ ++ EE  +++ + A  + Q 
Sbjct: 741 VSLYARQLEDKISSLASKLETSPSQLEFRLNKLIEENEEMKELVASYRRQF 791


>gi|237708798|ref|ZP_04539279.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
 gi|229457224|gb|EEO62945.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
          Length = 465

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 152/480 (31%), Positives = 249/480 (51%), Gaps = 62/480 (12%)

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           E + RAR ++  + +G     W ++KE  G T F+GYD      F + +  +L       
Sbjct: 31  ETKERAR-NAAAVETGD----WITIKE--GDTHFVGYD------FTEYETSILR------ 71

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                    + I Q+ + +         ++V   TPFYAE+GGQ+GDTG  + +   ++I
Sbjct: 72  --------YRQIKQKNQTL--------YQIVLSDTPFYAESGGQVGDTGVIVSEFETIEI 115

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  KK   + +H  I ++     ++  +  +D + R   + NHS THLL  AL  +LG+
Sbjct: 116 IDT-KKENNLPIH--ITKKLPEHLDVPTMACVDTEKRAACAANHSCTHLLDEALRQVLGT 172

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIAS 662
           HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I +N+P+   R +  E A   
Sbjct: 173 HVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIRENIPLTEYRNLPIEKAKEL 232

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRVV         +S   CGGTHVS+TG+I ++ I+SESS+ AG+RR
Sbjct: 233 GAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVSATGKIGMVRIISESSVAAGVRR 286

Query: 723 IEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVGR---VEEIWEEYRKLQLI 773
           IEAITG +    +    + L  L +       LKV+    +     +++  EE+ K +  
Sbjct: 287 IEAITGVKVEELMDTVQDTLNDLKALFNNAPDLKVAIRKYIDENAGLKKQVEEFMKEKGA 346

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K +L  N ++++  K+         I  + +  +K +   L+ +I + + +++G    
Sbjct: 347 ALKARLVENAKEINGVKVVKA------IIPMSADVVKDIAFQLKGEIPANLFVVIGSVDN 400

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K  + ++++EDL+    NA  L R +AK++  GGGGG+PH A +GG N +  + A+  V
Sbjct: 401 NKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQPHFATAGGKNPDGLNAAVDKV 459


>gi|297197300|ref|ZP_06914697.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|297146671|gb|EFH28278.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 389

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 218/417 (52%), Gaps = 51/417 (12%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M    ++R  F +F+++ GH L+  S+L+P     ++FT SGM P      G+  P  + 
Sbjct: 1   MDTDRTVRV-FTDFYRERGHHLITGSTLLPPPGDPVLFTTSGMHPLTPFLEGRPHPRGRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +  VQ+C+R      DLD VG +  H T FEMLG++S G Y   ++++  ++LL   F +
Sbjct: 60  LVNVQRCLRT----TDLDEVGDST-HLTVFEMLGSWSLGDYGHPQSLRWGYELLRDGFGV 114

Query: 121 DQRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              +L++TV+        D E+ + W+++     +  + +T  DN+WS    GPCGP SE
Sbjct: 115 PHEQLHVTVFGGDGQVGPDLESLRTWEEL-----EVPVELTREDNWWSNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF   G   P G P +     R++EIWN V M++ +        L +  IDTGMGLER+ 
Sbjct: 170 IFVWTGGTPPRGTPTTDP---RWVEIWNHVVMRYRRHEDGSLQPLRRPGIDTGMGLERLV 226

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           TVLQ + + +D DLF+   +    +  +     +  + R++ DHLRS+  +I DG+ P+N
Sbjct: 227 TVLQGRDSVHDTDLFEPWRRLLRPLWEL-----DEPSLRLVCDHLRSAVVVIGDGVRPSN 281

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL--------- 345
            GRGYVLRRI+RR +   R    +  L    LP           EL+Q  L         
Sbjct: 282 TGRGYVLRRIVRRLLTTLRRDDPSRTLCD--LPV----------ELVQYTLEHFRQSCGT 329

Query: 346 -LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
            L+ + L  E+ RF + L+RG  LL G   + G    L+G+    L+DTHGLP D++
Sbjct: 330 DLVRDVLVEEERRFDRLLERGRRLLSGP-RYRGP---LSGEDYDYLHDTHGLPRDLV 382


>gi|90076782|dbj|BAE88071.1| unnamed protein product [Macaca fascicularis]
          Length = 410

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 146/243 (60%), Gaps = 21/243 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-- 61
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7   ASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66

Query: 62  ---TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+EF
Sbjct: 67  SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPCG
Sbjct: 127 GIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSE  +D+     GG   +   +++    +EIWNLVF+Q+ ++       LPK S D G
Sbjct: 186 PCSETHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSTDLG 241

Query: 228 MGL 230
             L
Sbjct: 242 EAL 244


>gi|50510863|dbj|BAD32417.1| mKIAA1270 protein [Mus musculus]
          Length = 736

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 193/677 (28%), Positives = 314/677 (46%), Gaps = 117/677 (17%)

Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNN 268
           +LP+  +DTGMGLER+  VLQ K + YD DLF  L+ A  Q  G            EG  
Sbjct: 12  LLPQRHVDTGMGLERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRI 71

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLP 327
              +RV+ DH+R+ S  IADG+ P   G   VLRRI+RRA+ Y+  +    P  +  L+P
Sbjct: 72  DTAYRVVADHIRTLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVP 131

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
            +   +GSAYPEL +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA
Sbjct: 132 VVVETLGSAYPELEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVA 191

Query: 388 F--KLYDTHGLPLDIMQDILCARGL----AGIDIISFNQAL---------EEQRSRARAH 432
           +   L    G+PLD+++ +L  +G+    AG++ ++  +A          +E R     H
Sbjct: 192 WSLSLSGNLGIPLDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVH 251

Query: 433 SLG----LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
           +L      G  TT+        KY  T     D   G          LC+          
Sbjct: 252 ALEELHRQGIPTTDD-----SPKYNYTLHPNGDYEFG----------LCE---------- 286

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-- 546
           + +++   + G  V    +GQ+  ++ D+T FYAE GGQ  D G  +  G +  +  V  
Sbjct: 287 ARVLQLYSETGTAVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAG 346

Query: 547 QKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
            +   G  +H A+  ER  +  ++ L     Y ++R     H+ATHLL  AL   LG   
Sbjct: 347 AQLCGGFILHEAMAPERLQVGDQVQL-----YVDKRSRPGKHTATHLLSWALRQTLGPTT 401

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q GS + P+ LRFDV     +T+ +L+++E  V +++ Q+ PV       E+   +  A
Sbjct: 402 EQRGSHLNPERLRFDVATQTLLTTEQLRTVESYVQEVVGQDKPVFM-----EEVPLAHTA 456

Query: 666 ALLGTKYNDRVRVVSVEYED--------------------GGVHSSA-LCGGTHVSSTGE 704
            + G +  D V      Y D                      +H+S  LC GTH+ STG 
Sbjct: 457 RIPGLRSLDEV------YPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGA 510

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +  L I+ E  +  GI R+ AITG++A ++  +GQ    +  A+  ++SQG+        
Sbjct: 511 VGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGS-------- 562

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               R L   H   +L  ++  L+  ++A+    S +I +   +EL++ +  LQ++  + 
Sbjct: 563 ----RDLPEAH---RLSKDIGRLT--EVAE----SAVIPQWQRQELQTTLKMLQRRANTA 609

Query: 824 IIML-VGISKEKKASVL 839
           I  L  G + EK   +L
Sbjct: 610 IRKLEKGQATEKSQELL 626


>gi|76801007|ref|YP_326015.1| alanyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|83305852|sp|Q3ITT7|SYA_NATPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76556872|emb|CAI48446.1| alanine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 932

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 240/973 (24%), Positives = 414/973 (42%), Gaps = 184/973 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           ++  +R  FL FF+ + HE +   P ++    +D  ++ T + +  F+ + T G+  P  
Sbjct: 61  SLEEMREAFLSFFEDHDHERIEPYPVAANRWRDD--VLLTQASIYDFQPLVTSGETPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F        I           
Sbjct: 119 NPLTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNA---REDID---------- 161

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           D DQ      VY + E      + +  L AD I  +T  ++ W     G  GP  E+ + 
Sbjct: 162 DPDQYAYEGEVYWKSETVAYCDQLLDELGAD-IEDVTYIEDPWVGG--GNAGPAIEVIY- 217

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--------QNKQERFILPKMSIDTGMGL 230
                            R +E+  LVFM  EQ        ++      +    +DTG GL
Sbjct: 218 -----------------RGLELATLVFMCMEQDPDGDYELKDGNRYSYMDTYVVDTGYGL 260

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRV-------------- 274
           ER   + Q     Y+  ++  +I   +   G+ Y     ++VN                 
Sbjct: 261 ERWTWMSQGTPTVYEA-VYPEMISFLKDNAGLDYSDREESLVNRAARLSGKLDIDDVDDV 319

Query: 275 ------------------------------IVDHLRSSSFLIADGILPANEGRGYVLRRI 304
                                         I DH R+ ++++ DGI+P+N G GY+ R +
Sbjct: 320 EAARDDIADELGVETDELRALVEPLEDIYAIADHCRTLAYMLGDGIVPSNVGTGYLARMV 379

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI--QAKLLIEETLRSEDERFGKTL 362
           +RR    A  +G   PL          E+     E +  + +  + + +R+E E++ +TL
Sbjct: 380 LRRTKRLADGVGVDAPL---------DELVDMQAERLDYENRDTVRDIVRTEVEKYRETL 430

Query: 363 DRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS-FNQ 420
           +RG   ++ +      K + +  D   +LYD+ G+  + +++I    G A ++I   F  
Sbjct: 431 ERGRRHVERLAEEYAQKGDPIPLDEVIELYDSRGIQPETVEEIAADHG-ADVEIPDDFYS 489

Query: 421 ALEEQRSRARAHSL-GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            + E+   A A +  G  +G  ++I                        + E  K+  ++
Sbjct: 490 LVAERHGEADADADDGTLAGDDDRI----------------------ADLPETEKLYYEE 527

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           P         +  +A+V   +++E    G+ V +V  DQT FY E GGQ  DTG    D 
Sbjct: 528 PE-------RTDFEAVVL--DVIERDADGETVYDVALDQTMFYPEGGGQPADTGTLSTDD 578

Query: 539 IRLQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +  ++TDVQ+   G+ +H      G    +R +      ID   RR+L  +H+ATH++ H
Sbjct: 579 VAAEVTDVQE-TNGVVLHRTDEAPGKGEFVRGQ------IDGVRRRRLMQHHTATHIVGH 631

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           A   +LG HV Q G+    +  RFD+ H + I+  E+K IE   N+I+  NLPV      
Sbjct: 632 AARQVLGDHVRQAGAQKGVESARFDIRHYERISREEVKRIERVANNIVTDNLPVKQEWPK 691

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R +A A     +   G    + +R++ V     G    A C GTHV  TG+I  + I+S 
Sbjct: 692 RNEAEADYGFDIYQGGIPPGETLRLIQV-----GEDVQA-CAGTHVLQTGDIGTIKILST 745

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             ++ G+ R+    G  A       ++ L   A  L VS   V    E  +EE++     
Sbjct: 746 ERVQDGVERLVFAAGDAAIEATQRTEDALYDTAEVLDVSPQEVPATAERFFEEWKD---- 801

Query: 774 HAKR--KLQLNVEDLSCH-----KIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGI 824
             KR  +L+  + +   H     +  D+   + ++  VD    +L++  +AL   ++ G 
Sbjct: 802 RGKRIEELKEQLAEARAHGGDGGEEVDLGGTTAVVQRVDGDMDDLRATANAL---VEDGT 858

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + ++G S +  A+ ++ V +++     AV +  L+ +V GGGGG   P  AQ GGP+ + 
Sbjct: 859 VAVLG-SGDDSATFVVAVPDNVDINAGAV-VGELADRVGGGGGGP--PDFAQGGGPDVDS 914

Query: 885 ADQAIAGVASFLK 897
            D+A+      L+
Sbjct: 915 LDEALDAAPEILR 927


>gi|15897276|ref|NP_341881.1| alanyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174525|ref|ZP_06388494.1| alanyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|14286171|sp|P96041|SYA_SULSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13813483|gb|AAK40671.1| Alanyl-tRNA synthetase (alaS) [Sulfolobus solfataricus P2]
 gi|261601946|gb|ACX91549.1| alanyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 900

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 206/847 (24%), Positives = 360/847 (42%), Gaps = 154/847 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +P   ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGVTFGRHLTTFEMAAHHAFNYPDRYVYWKDETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +  +   L    +DTG G+ER+A V
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGDYIPLKLKIVDTGYGVERIAWV 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFDKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKNVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIGFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  +       + F          A+ H
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGVPPDLLEEELKKKR------VKFELPRNFYALVAKRH 476

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                + T + ++  +K        +  DLL     ++   K+  +              
Sbjct: 477 Q----TSTIKNVYDKVK--------LPKDLLEYITTLQPTEKLYYKD------------- 511

Query: 493 KAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
               Q     E  V G  K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 512 ----QYMRSFEGKVLGIYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVVDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + +H    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG H+ Q G
Sbjct: 567 VNDVIIHVLKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGDHIWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKALTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ GI R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGIIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKLQLNVEDLSC 788
               ++   + K+   +  +  S   +  R+  I  E  +K  LI   R++ +  E L+ 
Sbjct: 744 ALVDYIRETEAKIAEASKIIGTSPDQLPSRLRRILNEVEKKNNLIIQYRRI-VETELLNS 802

Query: 789 HKIADVN 795
            K  ++N
Sbjct: 803 LKPYEIN 809


>gi|312136375|ref|YP_004003712.1| alanyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224094|gb|ADP76950.1| alanyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 908

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 200/825 (24%), Positives = 338/825 (40%), Gaps = 165/825 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNS--GMVPFKNIFTGQEKPVY 58
           ++  +   FL+FF+K GH+++P   ++     D   +   S     P+  + +G   P  
Sbjct: 66  DLYELEKLFLKFFEKKGHKIIPRYPVVAKRWRDDVFLVGASIYNFQPW--VTSGIVDPPA 123

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R     ND+DNVGRT RH T F M G+ +F       Y+K   I+  ++ 
Sbjct: 124 NPLVVSQPSIRL----NDIDNVGRTGRHFTCFTMGGHHAFNKEDKIIYWKNETIKYCYEF 179

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           L                           +  G+S  KI  I   +++W     G  GPC 
Sbjct: 180 L---------------------------QTLGISPKKITFI---ESWWEGG--GNAGPCY 207

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+      C+ G            +E+  LVF+QF+   K E   +P   +DTG GLER 
Sbjct: 208 EV------CVDG------------VELATLVFIQFKTNGKLED--IPLKIVDTGYGLERF 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--------------------------- 266
           A V Q     YD  +F   I   + +TG+  +                            
Sbjct: 248 AWVSQGTPTAYDA-VFPQFIDKLKDITGVSVDKRLLKENARIAGLMDIETESDLMKLRKK 306

Query: 267 ------------NNIV----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                       NNI+    N   I DH R  +F+++DG++P+N G GY+ R ++RR + 
Sbjct: 307 VANKLNISVDKLNNIIGPMENIYAIADHTRCLTFMLSDGVIPSNMGEGYLARLVLRRIIR 366

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
               L    PL   ++      +   YPE+ +    I   +  E++R+ KT+ +G   + 
Sbjct: 367 LMDELNLNMPLK-KIMEIQIDILSKHYPEIEKHYDHILNVVELEEKRYSKTISKGKKTVK 425

Query: 371 GVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
            +++ L +     +      KLYD+ G+P +++++I    G++     +F   + EQ   
Sbjct: 426 RIINDLKRKNKNKIPLKTLIKLYDSKGVPPELVREICKKEGISVELPDNFYTLVAEQ--- 482

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
              H         EKI   L E    T+ + Y+  +  +F                    
Sbjct: 483 ---HEGKKTKEKGEKIDLDLPE----TKLLFYEKPKEKRFN------------------- 516

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
                          + +   K  V+ D+T FY E GGQ  D G  + +G +  + +V K
Sbjct: 517 --------------AKIIGSYKNSVILDKTLFYPEGGGQPSDRGYLVVNGKKFYVKNVTK 562

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               I +H    +        ++   ID++ R +L+ NH+ATH+L  +   ILG HV Q 
Sbjct: 563 -VNNIILHELDTDNVENLVGKNVEGIIDWERRVKLTRNHTATHILLASARKILGDHVWQA 621

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+       R D++H K ++  E+K IE   N+ + +N+ V  + M+R+ A       L 
Sbjct: 622 GAKKGIKASRLDISHYKRLSRDEIKKIEKLANEYVRKNIKVNVKWMDRQAAEKKYGFILY 681

Query: 669 --GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G     ++RVV +     GV   A C GTHV  TG+I  + I     I+ G+ R+E  
Sbjct: 682 QGGVIPGSKIRVVEIP----GVDVQA-CAGTHVEYTGDIGFIKINRTERIQDGVERLEFS 736

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            G  A   +   ++ L   A   +V    +    +  +EE+++ +
Sbjct: 737 VGDSAVDFVQHYEDLLLKSAQIFRVEPQILPKTCKRFFEEWKQFK 781


>gi|257052998|ref|YP_003130831.1| alanyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691761|gb|ACV12098.1| alanyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 926

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 217/904 (24%), Positives = 371/904 (41%), Gaps = 187/904 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELL-PSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQA 60
            +  +R  FL FF+++ HE + P           ++ T + +  F+ ++ +G   P    
Sbjct: 61  ELGEMREQFLSFFEEHDHERIDPYPVAANRWREDVLLTQASIYDFQPHVTSGASPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG------------YFKERAIQ 108
           +   Q C+R      D+DNVG T RH   FEM+G+ +F              Y+K+  ++
Sbjct: 121 LAVSQPCIRM----QDIDNVGVTGRHTMAFEMMGHHAFNADEGTDYAYEGEVYWKDECVE 176

Query: 109 LAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              DLL +                             + AD+   +T  ++ W     G 
Sbjct: 177 YCMDLLAE-----------------------------VGADREA-VTLIEDPWVGG--GN 204

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ----------NKQERFI 218
            GP  E+ +               EG    E+  LVFMQFE+           N   R  
Sbjct: 205 AGPAFEVIY---------------EG---AELATLVFMQFERDPDGDFEMKDGNTYSR-- 244

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYD------IDLF------------KHLIQASEQVT 260
           + +  IDTG GLER   + Q     Y+      ID              + ++  + +++
Sbjct: 245 MDRRVIDTGYGLERWTWMSQGTPTVYEAVYPDMIDFLTDNAGIDHTADEEEIVHKAAKLS 304

Query: 261 GMKY--EGNNIVNHR-------------------------VIVDHLRSSSFLIADGILPA 293
           G     E  ++   R                          I DH R+ ++++ DGI+P+
Sbjct: 305 GRMDIDEAEDVEAARDDIAAEIGVATDRLRELVEPLESIYAIADHSRTLAYMLGDGIVPS 364

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N G GY+ R ++RR       +G   PL   L+      +G         +  I + +R+
Sbjct: 365 NVGTGYLARMVLRRTKRLVDEVGVDAPLD-ELVDMQAERLG------YDNRDTIRDIVRT 417

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E E++ +TLDRG   ++ +        + +  D   +LYD+HG+  + ++ I   RG+A 
Sbjct: 418 EVEKYRETLDRGHRRVEQLAEEYADSGDPIPADELVELYDSHGMQPETVEQIAADRGVAV 477

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
                F   + E+   A        S T E++   L E    T+ + YD    ++F    
Sbjct: 478 ETPEDFYSLVAERHEDAERAGSTEESDTDERL-ADLPE----TEKLYYDDQTRTEF---- 528

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            ++V  + ++ +           +VV DQT FY E GGQ  D G
Sbjct: 529 ----------------EAVVLDVFERAD---------GYDVVLDQTMFYPEGGGQPPDQG 563

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   +++TDVQ + +G+ +H    + G   T   +   +D + RR+L  +H+ATH+
Sbjct: 564 TLSTDDETVEVTDVQIQ-DGVILHRTDADPG---TGDFVRGQVDGRRRRRLMAHHTATHI 619

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + HA   +LG H+ Q G+    D  R DV H +P++ A +K IE   NDI+  N  V   
Sbjct: 620 VVHAARQVLGDHIRQAGAQKGTDSARIDVRHYEPVSRAAVKEIERVANDIVTDNAQVTQE 679

Query: 653 IMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +R +A A     L   G    +++R++ VE           CGGTHVS TGE+  + I
Sbjct: 680 WPDRHEAEAEYGFDLYQGGIPAGEQIRLIHVE------DDVQACGGTHVSRTGEVGAIKI 733

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            S   I+ G+ R+    G+ A       ++ L   A    V   +V    E  + E+++ 
Sbjct: 734 RSTERIQDGVVRLTFAAGEAAIEATQATEDALYEAAEAFDVDPQDVPETAERFFAEWKER 793

Query: 771 -QLIHAKRK--LQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGII 825
            + I A R    ++     S  +  D++  + ++  VD +  EL++  +A+     SG +
Sbjct: 794 GKEIEALRAELAEVRASGASEGEEVDLDGTTAVVQRVDGEMDELRATANAI---ADSGSV 850

Query: 826 MLVG 829
            +VG
Sbjct: 851 AVVG 854


>gi|57641502|ref|YP_183980.1| alanyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|68735034|sp|Q5JIL7|SYA_PYRKO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57159826|dbj|BAD85756.1| alanyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 917

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 250/971 (25%), Positives = 424/971 (43%), Gaps = 189/971 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKN-IFTGQEKP 56
            +  +R  FL FF+K  HE  P        ++P     ++   + ++ F+  + +G+  P
Sbjct: 58  TLDEMREKFLSFFEK--HESYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADP 115

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAW 111
               +T  Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA+
Sbjct: 116 PANPLTISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAF 171

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +  TKE  +           ED                    IT  +N W  A  G  GP
Sbjct: 172 EFFTKELKMKP---------ED--------------------ITFKENPW--AGGGNAGP 200

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ-----------QNKQERFI-L 219
             E+ +                  R +E+  LVFMQ+++           + K + ++ +
Sbjct: 201 AFEVLY------------------RGLEVATLVFMQYKKAPADADPSQVVEIKGDYYVPM 242

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV--- 274
               +DTG GLER+  +       YD  +  ++I+  +++ G++     I+  N R+   
Sbjct: 243 ETRVVDTGYGLERLVWMSHGTPTAYDA-VLGYVIEPLKKMAGVEKIDERILMENSRLAGM 301

Query: 275 ---------------------------------------IVDHLRSSSFLIADGILPANE 295
                                                  I DH ++ +F++ADG++P+N 
Sbjct: 302 FDIEDMGDLRYLREQVAKRVGISVEELEKAVRPYELIYAIADHTKALTFMLADGVIPSNV 361

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I + +  E+
Sbjct: 362 KAGYLARLLIRKSIRHLRELGLEIPLA-EIVAMHIKELSPTFPEFKEMEDVILDIINVEE 420

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +R+ +TL RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+  +
Sbjct: 421 KRYAETLRRGSDLVKREIAKLKKKGINELPLEKLILFYESHGLTPEIVAEVAEKEGIK-V 479

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-D 472
           +I      L  + +  +A          +   F L +    T+ + Y+      FMKE D
Sbjct: 480 NIPDNFYTLVAKEAEKQAEKKEAAEYVVD---FELVKDLPDTRTLYYE----DPFMKEFD 532

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +VL                K I                 VV DQT FY E GGQ  DTG
Sbjct: 533 ARVL----------------KVIADW--------------VVLDQTAFYPEGGGQPYDTG 562

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G ++++T+VQK   G  + H + +  + +  +++   +D+  R Q   +H+ TH+
Sbjct: 563 VLEVNGEKVKVTNVQKV--GKVILHKVEKPELFKEGVTVHGRLDWDRRIQHMRHHTGTHV 620

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V   
Sbjct: 621 LMGALVRVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWE 680

Query: 653 IMNREDA-IASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            + R +A +  G     G     RV RV+ +  ED  V +   CGGTH+ +TG I  + I
Sbjct: 681 WLPRTEAEMKYGFRLYQGGVVPGRVIRVLKI--EDWDVQA---CGGTHLPNTGLIGPIKI 735

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEY 767
           +    I+ G+ RI    G+ A + +   +  LK  A   +V    V    E     W+E 
Sbjct: 736 LRTERIQDGVERIIFAAGEAAINWMQETERLLKRTAEIFRVPPEKVPETAERFFNEWKEA 795

Query: 768 RKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           RK      K   +L V +L     K+ +V F+  ++ E    +L+   + L+K  ++ ++
Sbjct: 796 RKEVEKLRKELAKLLVYELQEKVEKVGNVEFIGAVV-EGTIDDLREAANRLRK--ENRVV 852

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  IS+E      +V   D LD   A +LA++   V  GGGGGGR  +AQ    N  KA
Sbjct: 853 VL--ISREGH---FVVAVGDGLD-LKAGELAKVITSV-AGGGGGGRKELAQGRIKNPLKA 905

Query: 886 DQAIAGVASFL 896
           ++AI  V   L
Sbjct: 906 EEAIEEVKKML 916


>gi|330902429|gb|EGH33472.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 175

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 120/172 (69%), Gaps = 9/172 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E   +L +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETG 167
            +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TG
Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTG 175


>gi|222479154|ref|YP_002565391.1| alanyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|254765170|sp|B9LUG4|SYA_HALLT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|222452056|gb|ACM56321.1| alanyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 926

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 219/910 (24%), Positives = 372/910 (40%), Gaps = 181/910 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           ++S +R  FL FF+++GHE +   P ++    +D  ++ T + +  F+ + T GQ  P  
Sbjct: 61  SLSEMREAFLSFFEEHGHERIDPYPVAANRWRDD--VLLTQASIYDFQPLVTSGQTPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F                 +E 
Sbjct: 119 NPLTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFN--------------TREEV 160

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D+   +  VY +DE      K    L AD +  IT  ++ W     G  GP  E+ + 
Sbjct: 161 AEDEYAYHGEVYWKDETVEYCDKLFESLGAD-LEDITYIEDPWVGG--GNAGPAIEVIY- 216

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFM--------QFEQQNKQERFILPKMSIDTGMGL 230
                            +  E+  LVFM         +E ++      +    +DTG GL
Sbjct: 217 -----------------KGAELATLVFMCMERDPDGDYEMKDGHTYSFMDTYIVDTGYGL 259

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRV--------------- 274
           ER   + Q     Y+  ++   I   ++  G+++ E    + HR                
Sbjct: 260 ERWTWMSQGTATVYEA-VYPDAIDFLKENAGIEHTEAEQKLVHRAAKLSGRLDIDDVDDV 318

Query: 275 ------------------------------IVDHLRSSSFLIADGILPANEGRGYVLRRI 304
                                         I DH R+ +++  DGI+P+N G GY+ R +
Sbjct: 319 EAARGEIADRLDVDVNRLRELVEPLESIYAIADHSRTLAYMFGDGIVPSNVGTGYLARMV 378

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RR       +G   PL   L+      +G       + +  I E +R+E+ ++ KTL+R
Sbjct: 379 LRRTKRLVDEIGIDAPLD-ELVDMQAERLG------YENRDTIREIVRTEERKYRKTLER 431

Query: 365 GLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           G   ++ +   + G DE +  +V  +LYD+HG+  D++ DI   RG A +D+     AL 
Sbjct: 432 GSRKVESLADEYAGTDEPIPTEVLLELYDSHGIQPDMVADIAAERG-ATVDVPDDFYALV 490

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
             R      + G  +       F              DL    K   +D+          
Sbjct: 491 ADRHE---EADGDEAAAERDDRFD-------------DLPETEKLFYDDQ---------- 524

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
              G +     ++   E+ E        +VV DQT FY E GGQ  D G        + +
Sbjct: 525 ---GRTEFEAVVLDVFELEE------GYDVVLDQTMFYPEGGGQPADRGQLTAGETTVDV 575

Query: 544 TDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            DVQ++  G+ +H    + G    +R +      +D   R +L  +H+ATHL+ HA   +
Sbjct: 576 VDVQER-NGVVLHRTDADPGKGEFVRGQ------VDGDRRDRLRAHHTATHLIGHAAREV 628

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV Q G+    D  R D+ H + IT  ++K IE   N ++  ++PV     +R +A 
Sbjct: 629 LGNHVRQAGAQKGIDSSRLDIRHFERITREQVKEIERVANALVRDDVPVRQEWPDRNEAE 688

Query: 661 ASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           +     L   G      +R++ V  ED        C GTHV  TGEI  + ++    ++ 
Sbjct: 689 SEHGFDLYQGGVPPGTNIRLIHVGDED-----VQACAGTHVERTGEIGAVKVLKTEPVQD 743

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---------K 769
           G+ RI    G  A       ++ L   A  L V   +V    E  +EE++         K
Sbjct: 744 GVERIVFAAGGAAVEATQRTEDALYDAARALDVDPLDVPETAERFFEEWKGRGKEIESLK 803

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIML 827
            +L  A+     + E++      ++  ++ +I  +  D+ EL++  +A    +  G + +
Sbjct: 804 EELAAARASGGADAEEV------EIGGVTAVIQRLDGDADELRATANA---HVDDGKVAV 854

Query: 828 VGISKEKKAS 837
           VG   +  AS
Sbjct: 855 VGSGADGSAS 864


>gi|14589381|gb|AAK70636.1|AC091238_14 Putative cytosolic tRNA-Ala synthetase [Oryza sativa Japonica
           Group]
          Length = 694

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 216/457 (47%), Gaps = 46/457 (10%)

Query: 294 NEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           NEGR YVLRRI+RRA+ +  + L   +     L+      MG  +PEL   +  I++ ++
Sbjct: 66  NEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDIIK 125

Query: 353 SEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            E+E F  TL +G        D V    G D       AF L+DT+G P+D+ + +    
Sbjct: 126 DEEESFENTLAKGFEKFKKAADAVKESGGTD-------AFVLWDTYGYPVDLTEVMGVDY 178

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL+ +D   F+ A+EE R +AR      G         S+     AT       LR    
Sbjct: 179 GLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANATA-----QLRNQGL 225

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
              D       P     +   S+VKAI    E V  A   +   +V + T FYAE GGQ+
Sbjct: 226 ASTD-----DSPKYGYKDN-DSVVKAIYTGSEYVSAASGDEDFGLVLESTSFYAEQGGQI 279

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSIN 586
            DTG   G      +T+VQ  A G  +H     +G   L     +   +DY  R  ++ N
Sbjct: 280 YDTGKIEGSFGSFNVTNVQVFA-GYVLHMGSFTKGSKALSVGDKVACKVDYARRALIAPN 338

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   +L+ IE  VN  I   
Sbjct: 339 HTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRKIESIVNQQIKDK 398

Query: 647 LPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGGVHSSALC 694
           L V  R +   DA   +G  A+ G  Y D VRVVSV           E ++    S+ LC
Sbjct: 399 LEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPESKEWLSISTELC 458

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           GGTH+ +T E     ++SE  I  G+RRI A+T + A
Sbjct: 459 GGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHA 495


>gi|315231477|ref|YP_004071913.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184505|gb|ADT84690.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 911

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 228/934 (24%), Positives = 407/934 (43%), Gaps = 197/934 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            +  +R  FL FF+++GH  +    ++P     ++   + ++ F+  + +G+  P    +
Sbjct: 58  TLEEMREAFLSFFERHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +  +           ED                    IT  +N W  A  G  GP  E+ 
Sbjct: 174 DLKMKP---------ED--------------------ITFKENPW--AGGGNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-----------KQERFI-LPKMSI 224
           +                  R +E+  LVFMQ++              K +R++ +    +
Sbjct: 203 Y------------------RGLEVATLVFMQYKLAPPGTPDDQVVIIKGDRYVPMDTKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV-------- 274
           DTG GLER+  + Q     YD  +  ++++  +++ G++   + I+  N R+        
Sbjct: 245 DTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKRMAGIEKIDDRILMENSRLAGMFDIED 303

Query: 275 ----------------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLKVLRREVAGRVGISVEELERLIRPYELIYAIADHTKALTFMLADGVVPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPL----MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
            R ++R+++ + R LG   PL     MH+       +   +PE  + + +I + +  E++
Sbjct: 364 ARLLIRKSIRHLRELGLQIPLSEIVAMHI-----KALHKTFPEFKEMEDVILDIVNVEEK 418

Query: 357 RFGKTLDRGLVLLDGVLSHL---GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           R+ +TL RG  L+   +  L   GKDEI L   + F  Y++HGL  +I+++I    G+  
Sbjct: 419 RYQETLKRGSDLVRREIKKLRKEGKDEIPLEKLILF--YESHGLTPEIVKEIAEKEGIKV 476

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE- 471
               +F   + ++  +             + + F L      T+ + Y+      FMKE 
Sbjct: 477 HIPDNFYSLVAKEAEKMAKEEK-----EEKIVDFELVRDLPDTRTLYYE----DPFMKEF 527

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           D KVL                       +++++ V       V D+T FY E GGQ  DT
Sbjct: 528 DAKVL-----------------------KVIDDWV-------VLDKTAFYPEGGGQPYDT 557

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G    +++ +VQK   G  + H + + G  +  M++   ID++ R Q   +H+ TH
Sbjct: 558 GELNG----VEVLEVQKV--GKVILHRVKDPGKFKEGMTVHGKIDWERRIQHMRHHTGTH 611

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG HV Q GS ++ +  R D++H K I+  ELK IE   N I+ ++  V  
Sbjct: 612 VLMGALVRVLGKHVWQAGSQLSTEWARLDISHYKRISEEELKEIERLANRIVMEDRKVAW 671

Query: 652 RIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + R +A       L   G      +R++++  ED  V +   CGGTH+ STG I  + 
Sbjct: 672 EWLPRTEAEQKYGFRLYQGGVVPGRIIRILNI--EDWDVQA---CGGTHLPSTGLIGPIK 726

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-- 767
           I+    I+ G+ RI    G+ A      + + +K  +   +V    +    E+ +EE+  
Sbjct: 727 ILRTERIQDGVERIIFACGEAAIKEWQRERDIIKKTSEVFRVPPEKLPETAEKFFEEWKQ 786

Query: 768 -RKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            RK      K   +L V +L     KI ++ F+  ++ E D   L+    AL+ K    +
Sbjct: 787 ARKEVEKLKKELAKLLVYELENKVEKIGEIEFIGEVV-EGDLDHLREA--ALKLKKPKRV 843

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             L+    E   +V++ V +++   F A +L R+
Sbjct: 844 TALIS---EDTNAVVVAVGDEV--PFKAGELIRI 872


>gi|300214776|gb|ADJ79192.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 230

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 142/226 (62%), Gaps = 22/226 (9%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
             +T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT   
Sbjct: 61  HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD+D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIF
Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172

Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
           FD+G+ +       P   PG   E ERY+EIWN+VF +F   N+ E
Sbjct: 173 FDRGQEMNNLPEDDPESYPGG--ENERYLEIWNIVFSEF-NHNQME 215


>gi|302551517|ref|ZP_07303859.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302469135|gb|EFL32228.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 396

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 217/415 (52%), Gaps = 33/415 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+   ++RT F +F+++ GH L+  S+L+P     ++FT SGM P      G+     + 
Sbjct: 1   MNTDRTVRT-FTDFYRERGHRLVTGSTLLPPPSDPVLFTTSGMHPLTPYLMGRPHSQGRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T VQ+C+R      DLD VG +  H T FEMLG++S G Y  E++++ A +LL   F +
Sbjct: 60  LTNVQRCLRT----TDLDEVGDST-HLTVFEMLGSWSLGDYGHEQSLRWAHELLRDGFGI 114

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
               L+ TV+  D+      E+ + W+++        + +T  +N+W     GPCGP SE
Sbjct: 115 PHGHLHATVFGGDDQVGPDTESLRTWRQLG-----VPVELTREENWWDNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF   G   PG  P GS     R++EIWN V M++++Q       LP+ SIDTGMGLER+
Sbjct: 170 IFVWTGG--PGTPPQGSPTTDPRWVEIWNHVLMRYDRQEDGTLEPLPRPSIDTGMGLERL 227

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
            TVLQ  T+ YD DLF+  ++    +  +     +    R++ DHLRSS  ++ DG+ P 
Sbjct: 228 VTVLQGHTSVYDSDLFEPWMRLLPPLWDL-----DEPTLRLVSDHLRSSVVILGDGVHPT 282

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
             GRGYVLRR++RR +     L   +P   +  LP    +   A+         + E L 
Sbjct: 283 ANGRGYVLRRLVRRLLT---ALWRDDPSRTLSDLPVELLDHTLAHFHQPGGSTPVREVLL 339

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            E+ RF   L RG      VLS       L+ D   +L+DT+GLP D++  +L  
Sbjct: 340 GEERRFATLLVRGRR----VLSRPEFRGPLSEDDYDRLHDTYGLPRDLVAGLLAG 390


>gi|318060582|ref|ZP_07979305.1| alanyl tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318076177|ref|ZP_07983509.1| alanyl tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 403

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/411 (33%), Positives = 216/411 (52%), Gaps = 47/411 (11%)

Query: 11  FLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
           F EF+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +  VQ+C+R
Sbjct: 13  FTEFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRLVNVQRCLR 72

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
                 DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D R L+ TV
Sbjct: 73  T----TDLEEVGDPT-HLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGIDPRLLHTTV 127

Query: 130 YDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +  DE       + ++W+++ G+  ++    T  DN+WS   TGPCGP SEIF   G+  
Sbjct: 128 FGGDERVGPDLASLEVWERL-GVPVER----TAEDNWWSNGPTGPCGPDSEIFLWTGDGP 182

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   P   E   R++E+WN V M+  +        LP+ ++DTG+GLER+A++LQ + + 
Sbjct: 183 PESTPTGDE---RWVEVWNHVMMRHRRLADGSLVPLPQRNVDTGLGLERLASLLQGERSV 239

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D D+F+   +    + G+     +  + R++ DHLRS+  ++ DG+ PA  GRGYVLRR
Sbjct: 240 FDGDVFEPWRRLLPPLWGL-----DETSVRLVSDHLRSAVVVLGDGVRPAATGRGYVLRR 294

Query: 304 --------IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRS 353
                   + R    Y   LG    L   L+       G     PE ++  L    TL  
Sbjct: 295 LVRRVLTMLWRTDSSYG--LGE---LPRELVTGTLGHFGQGGEDPETVRRVL---GTLAE 346

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           E+ RF   LDRG  +L G       DE    D+ + L+DTHGLP D+++ +
Sbjct: 347 EETRFRSLLDRGRRVLAGPRFRGPLDE---ADLHY-LHDTHGLPRDLVESL 393


>gi|288931271|ref|YP_003435331.1| alanyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288893519|gb|ADC65056.1| alanyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 901

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 252/954 (26%), Positives = 402/954 (42%), Gaps = 189/954 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+  +R  +L FF+K GHE +    ++      +  T + +  F+   T G   P    +
Sbjct: 61  NIDEMREYYLSFFEKRGHERIERYPVVARWRDDIYLTIASIADFQPFVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q C+R      DLD++GRT RH T FEM+ +  F++ G   Y+K   +    +LL  
Sbjct: 121 TISQPCIRM----EDLDSIGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN- 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             +L  R+  I VY E+                           W  A  G  GPC E  
Sbjct: 176 --ELGVRKEEI-VYKEEP--------------------------W--AGGGNAGPCLE-- 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFI-LPKMSIDTGMG 229
                 I GGL           E+  LVFM  E       + K ER+  +    +DTG G
Sbjct: 203 -----AIVGGL-----------ELATLVFMNLELDPNGDIEIKGERYRRMDNYIVDTGYG 246

Query: 230 LERMATVLQEKTNNYDI---------------------DLFKHLIQASEQVTGM--KYEG 266
           LER     Q     YD                      +  K L+  S ++ G+     G
Sbjct: 247 LERFVWASQGTPTVYDAIFPEVVDKIVENSSIEFSRKDEDMKGLLAESSKLAGVMSSLRG 306

Query: 267 NNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYVL 301
             ++  R                          + DH R+  F++ DG++P+N G GY+ 
Sbjct: 307 EELLKLRKSIADKFGMSVEVLDRIISPMEKAYALADHTRAILFMLGDGLVPSNAGAGYLA 366

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR++  A  +G+T  L +  L  L  ++  A+   ++    I+E L  E E++ +T
Sbjct: 367 RLMIRRSLRLADDIGFT--LTLFDLVELHRKILKAFEFEVELDT-IQEILELETEKYKRT 423

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++RG  +++  +    K    +     + YD+HG+P +I+  I    G    ++      
Sbjct: 424 IERGKSMVERTVKRKKKVTKED---LIEFYDSHGIPPEIVISIAEKEGAEVEEVEDLYAE 480

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           L  + S+A             KI   LK  Y  T+ + Y+    SK ++ + +V+     
Sbjct: 481 LASRHSKAEKKE-------KPKI---LKNDYPETEKLYYN----SKLLEFEAEVI----- 521

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                GV         +G++V           + ++T FY E+GGQ  D G  I    ++
Sbjct: 522 -----GV---------EGDLV-----------ILNKTAFYPESGGQDNDVGYLIAKDKKV 556

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++ DV ++ +G+ VH      G LR    +   +D + R +   +H+ATHLL + L   L
Sbjct: 557 RVVDVFEE-DGVVVHKV---DGELRVGDKVKGLVDEETRFRHMRHHTATHLLLNVLQKKL 612

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q G+    D  R DVTH K ++  E++ IE  VN  I  N PV    M R +A  
Sbjct: 613 GKHVWQAGARKEKDKARLDVTHYKRLSDEEIREIEREVNREIMANKPVRWTFMERNEAEK 672

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L   G      +RVV       G    A CGGTHV STGEI +  I+   SI+ G
Sbjct: 673 KFGFRLYQGGVPPGKVIRVVQ-----AGDDVQA-CGGTHVESTGEIGMFKILKVESIQDG 726

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + R E   G+ A  H+  Q+  LK  +S L+V    +   VE  +E     +      KL
Sbjct: 727 VIRFEYAAGEAALEHVAKQESLLKEASSILRVEPSILPKTVERFFE--EWKEQKKEIEKL 784

Query: 780 QLNVEDLSCHKIADVNFMS----HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +  +  L   +IA+ N+       I+ E   +++K++    QK  + G    VG+    K
Sbjct: 785 KEEIAKLKAERIAE-NYEEFDGIKIVVERIDEDIKTLAKLGQKLAEMG---FVGVLLSGK 840

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             V + VT    ++ +A +L R   K++  G GGGR  +AQ  G    + D+ +
Sbjct: 841 EGVRL-VTFSGHEKVDARELMREIGKLV-KGSGGGRRDLAQGAGQIMPEKDEVV 892


>gi|302518052|ref|ZP_07270394.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426947|gb|EFK98762.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 403

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 137/411 (33%), Positives = 214/411 (52%), Gaps = 47/411 (11%)

Query: 11  FLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
           F EF+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +  VQ+C+R
Sbjct: 13  FTEFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRLVNVQRCLR 72

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
                 DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D R L+ TV
Sbjct: 73  T----TDLEEVGDPT-HLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGIDPRLLHTTV 127

Query: 130 YDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +  DE       + ++W+++ G+  ++    T  DN+WS   TGPCGP SEIF   G+  
Sbjct: 128 FGGDERVGPDLASLEVWERL-GVPVER----TAEDNWWSNGPTGPCGPDSEIFLWTGDGP 182

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   P   E   R++E+WN V M+  +        LP+ ++DTG+GLER+A++LQ + + 
Sbjct: 183 PESTPTGDE---RWVEVWNHVMMRHRRLADGSLVPLPQRNVDTGLGLERLASLLQGERSV 239

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY---- 299
           +D D+F+   +    + G+     +  + R++ DHLRS+  ++ DG+ PA  GRGY    
Sbjct: 240 FDGDVFEPWRRLLPPLWGL-----DETSVRLVSDHLRSAVVVLGDGVRPAATGRGYVLRR 294

Query: 300 ----VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRS 353
               VL  + R    Y   LG    L   L+       G     PE ++  L    TL  
Sbjct: 295 LVRRVLTTLWRTDSSYG--LGE---LPRELVTGTLGHFGQGGEDPETVRRVL---GTLAE 346

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           E+ RF   LDRG  +L G       DE    D+ + L+DTHGLP D+++ +
Sbjct: 347 EETRFRSLLDRGRRVLAGPRFRGPLDE---ADLHY-LHDTHGLPRDLVESL 393


>gi|292558549|gb|ADE31550.1| Alanyl-tRNA synthetase, class IIc [Streptococcus suis GZ1]
          Length = 397

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 217/402 (53%), Gaps = 21/402 (5%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIV 560
           EAVS  +  +VFDQTPFYAE GGQ+ D G    A GD I   + DVQK   G  +H   +
Sbjct: 8   EAVSEGQALLVFDQTPFYAEMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVEL 66

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              I     +  L I+ + R+ +  NH+ATHLLH AL  I+G H +Q GS    D LRFD
Sbjct: 67  SASI-SVGQTYTLEIETKRRKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFD 125

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            TH + +T+ EL+ IE+ VN+ I   +PVVT   + + A   GA AL G KY   VRVV+
Sbjct: 126 FTHFEAVTAEELRRIEEEVNEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVT 185

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G +S  LCGGTHV +T EI +  I+ E  I +G RRI A+TG+ A      Q++
Sbjct: 186 I-----GDYSVELCGGTHVGNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQED 240

Query: 741 KLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFM 797
            LK +A+ +K  Q   V  +VE + ++ R LQ  +A  K +            + D N +
Sbjct: 241 ALKEVAATIKSPQIKEVPNKVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGI 300

Query: 798 SHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
            +I S+V   D+  L++  D  ++K  S +++LV    +K   ++   + D+    +A +
Sbjct: 301 RYIASQVQVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGN 356

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           L ++ A ++  G GGG+P MA +GG + +     +  VA  L
Sbjct: 357 LIKVLAPIV-AGRGGGKPDMAMAGGSDASAIQTLLNSVADNL 397


>gi|89266537|gb|ABD65560.1| alanyl-tRNA synthetase-like [Ictalurus punctatus]
          Length = 240

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 152/244 (62%), Gaps = 25/244 (10%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEMLG++SFG YFK+ A ++A +LLT+EF +   RLY T +        + D E  
Sbjct: 1   HHTFFEMLGSWSFGDYFKQLACKMALELLTQEFGIPLERLYFTYFGGHAEAGLECDNECK 60

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEG 194
           ++W  + G++ ++I+     DNFW M +TGPCGPCSEI +D+     GG   S   + + 
Sbjct: 61  QIWLDL-GVAEERILPGNMKDNFWEMGDTGPCGPCSEIHYDR----IGGRDASHLVNMDD 115

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
              +EIWNLVF+QF ++++ E   LPK SIDTGMGLER+ +VLQ   +NYD DLF    +
Sbjct: 116 PNVLEIWNLVFIQFNRESETELKPLPKKSIDTGMGLERLVSVLQNTMSNYDTDLFIPYFE 175

Query: 255 ASEQVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           A ++ TG +     +         + +RV+ DH R+ +  ++DG  P N GRGYVLRRI+
Sbjct: 176 AIQKGTGARLYTGKVGSEDQDGIDMAYRVLADHARTITIALSDGGRPDNTGRGYVLRRIL 235

Query: 306 RRAM 309
           RRA+
Sbjct: 236 RRAV 239


>gi|325968423|ref|YP_004244615.1| alanyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323707626|gb|ADY01113.1| alanyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 912

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 228/939 (24%), Positives = 392/939 (41%), Gaps = 183/939 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+K+GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 58  SIRDVREKFLNFFEKHGHARIKRYPVVARWRTDVYLVGASIYDFQPWVTEGIVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +  ++ A +  TK
Sbjct: 118 TLSQPSIR----FTDIDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETVEYAHEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E                           GL  D+I   T  +N W     G  G C EI 
Sbjct: 174 EI--------------------------GLRDDEI---TYKENIWEGG--GNAGECLEIL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMAT 235
                   GGL           E+  LVFM +   N   +++ +P   +DTG GLER+  
Sbjct: 203 V-------GGL-----------EVATLVFMHYRTVNG--KYVEMPMKIVDTGYGLERIYW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----------------------- 272
           +L  K   YD  +F   I+      G+    N ++ H                       
Sbjct: 243 LLTGKPTVYDA-VFGSFIEQLRSKLGLPRPSNEMLMHMATYFGQLDPEVTSIEKAYEYIS 301

Query: 273 --------------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                ++ DH R+ S+++ADG +P+N G GY+ R ++RR +   
Sbjct: 302 GKVGMNINEIKNILKAQETLYILSDHGRTLSWMMADGAIPSNSGVGYLGRLLLRRMLRSM 361

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
            + G   PL   ++      +   YPE+ + +  I E +  E+++F + L +   ++D V
Sbjct: 362 YVSGIEMPLT-EIMNMELEFLKGDYPEVYEERQTILELVDLEEKKFKELLRQAPSIIDRV 420

Query: 373 LS----HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
           +       GK E+   D+   LYD+ GLP +I++++  ++                    
Sbjct: 421 IKDRERKTGKRELTVDDL-ITLYDSQGLPPEIVREVSSSK-------------------- 459

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
                LGL     +  +  L  KY                    R++  +KP +D+ N V
Sbjct: 460 -----LGLSISVPDDFYSRLAAKY-------------------QRQIGEEKPKVDV-NPV 494

Query: 489 SSIVKAIVQQGEIVEEAVS----GQKV-------EVVFDQTPFYAEAGGQLGDTGCAIGD 537
              V+ + Q  E+  E +       KV        VVFDQT FY E GGQ+ D G     
Sbjct: 495 E--VQDLPQTRELFYENMRLFQFNAKVLRVIRGKYVVFDQTAFYPEGGGQVADHGVIRHS 552

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ DVQ+   G  + HAI     +  E ++   +D   R  L   H+ATH+L  ++
Sbjct: 553 RGEARVIDVQRV--GPVIVHAIEGEPPMDGE-NIEGIVDATRRLDLMRMHTATHILLQSI 609

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG H+ Q G+       R DVTH K  T  E+K IE+  N ++  N PV+ R ++R 
Sbjct: 610 RRVLGRHIWQAGAEKNVPFSRLDVTHYKLPTRDEIKKIEELANQMVVANYPVIIRWLSRT 669

Query: 658 DAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           DA +     +   G     R+R+V V   D   +    CGG HV +TGEI ++ IV    
Sbjct: 670 DAESKFGVYIYQGGAVPGARLRIVQVG-TDNDPYDVEACGGMHVGNTGEIGMIKIVKVEK 728

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---L 772
           I+ G+ R    TG+ A ++    ++ +  ++  +  S+  VV  V+E+  +  +++    
Sbjct: 729 IQEGVVRFIFTTGRHAVNYADSLEDSINEISELIGKSREEVVKGVKELLNDMGRMESRIK 788

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS--GIIMLVGI 830
           +  ++ ++ ++ +    +I  VN +     E ++++   + +  ++ + S    ++LV  
Sbjct: 789 VLTRKAIKGDIAEAMGKEII-VNGIGLTYMEYENEDKNYIQEFAKEYLGSRPNTVLLVIN 847

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGG 868
                   +I +  +     NA DL A+L+  V G GGG
Sbjct: 848 RVNNGTEYMIYLGSEAAKHVNAKDLIAKLNPGVNGRGGG 886


>gi|51102332|gb|AAT95879.1| alanyl-tRNA synthetase [Mastigamoeba balamuthi]
          Length = 208

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKII 152
           LGN+SFG Y+KE A+  +W+LLT+ + L + RL++TV+++D+E+ ++W ++SGL   +I+
Sbjct: 1   LGNWSFGDYYKEEALAWSWELLTQVWQLPKDRLFVTVFEDDDESAEIWARVSGLPK-RIM 59

Query: 153 RITTNDNFWSMAETGPCGPCSEIFFDQG------ECIPGGLPGSSEEGERYIEIWNLVFM 206
           +     NFW M +TGPCGPCSEI FD+G      E     + G +   +RYIEIWN VFM
Sbjct: 60  KFGAKSNFWEMGDTGPCGPCSEIHFDKGDLATQAETFADPIKGVNGTNDRYIEIWNNVFM 119

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-E 265
           Q+E+    E   L   ++DTGMG ER+  +LQ   +NYD D+F  +I    +++G+ Y +
Sbjct: 120 QYERVKSGELIPLKSKNVDTGMGFERVCAILQNVRSNYDTDVFSPIIAKIAELSGVPYGQ 179

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           G   + HRV+ DHLR+ SF IADG LP+N
Sbjct: 180 GPEGMPHRVVADHLRALSFAIADGALPSN 208


>gi|21225863|ref|NP_631642.1| alanyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|11228499|emb|CAC16521.1| putative alanyl tRNA synthetase [Streptomyces coelicolor A3(2)]
          Length = 404

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/410 (33%), Positives = 222/410 (54%), Gaps = 45/410 (10%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
           TF+E+++  GH  +  S+L+P     ++FT++GM P      G+  P+ + +  VQ+C+R
Sbjct: 9   TFVEYYEDQGHRRITGSTLLPEPGDPVLFTSAGMHPLTPYLEGRPHPLGRRLVNVQRCLR 68

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
                 DLD VG +  H T FEMLG +S G Y   R++  A  LLT+   +D   L+ TV
Sbjct: 69  T----TDLDEVGDST-HLTVFEMLGTWSLGDYEGSRSLDWAHRLLTEGLGVDPGLLHATV 123

Query: 130 YD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           Y        D E+ +LW++  G+  ++    T +DN+WS    GPCGP SEIF   G+  
Sbjct: 124 YGGGEQVGPDTESLRLWQE-RGVPVER----TVDDNWWSNGPVGPCGPDSEIFLWSGDTP 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   P   +   R++E+WN V M+  + +      LP+ ++DTG+GLER+A +LQ K++ 
Sbjct: 179 PRSTPTGDD---RWVEVWNHVMMRHRRLDDGRLVPLPQRNVDTGLGLERLAMLLQGKSSV 235

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           ++ D+F+   +    +  +     +  + RV+ DHLRS+  ++ DG+ P+N GRGYVLRR
Sbjct: 236 FECDVFEPWRRLLPVLWPL-----DEPSFRVVCDHLRSAVVIVGDGVRPSNTGRGYVLRR 290

Query: 304 IMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           ++RR +        +R LG   + L+ H L     +     P L++ +LL+E     E+ 
Sbjct: 291 LVRRLLTVLWRDDPSRGLGDLPDELITHTLDHFRQDGDPGLPGLVR-RLLVE-----EER 344

Query: 357 RFGKTLDRGLVLL--DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           RF + LDRG  +L        LG+++         L+DTHGLP +++  +
Sbjct: 345 RFRRLLDRGRNVLARPRFRGPLGEEDF------HYLHDTHGLPRELVTSL 388


>gi|14601887|ref|NP_148431.1| alanyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|6707749|sp|Q9Y9X3|SYA_AERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|5105865|dbj|BAA81177.1| alanyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 900

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 218/876 (24%), Positives = 374/876 (42%), Gaps = 163/876 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61
           +V   R  FL FF+K+GH  +P   ++      L  T + +V F+ ++ +G   P    +
Sbjct: 45  SVGEAREAFLSFFEKHGHTRVPPRPVVARWREDLYLTIASIVVFQPHVTSGLVPPPANPL 104

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE  ++LA++  T
Sbjct: 105 VISQPSIRL----EDIDNVGITIGRHLTSFEMAAHHAFNYPDRQVYWKEETVRLAFEFFT 160

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +                          + G+  + I+     +++W     G  GP  E+
Sbjct: 161 Q--------------------------VLGIPPELIV---FKESWWEGG--GNAGPSFEV 189

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                    GGL           E+  LVFM++   + +   I P   +DTG G+ER+A 
Sbjct: 190 AV-------GGL-----------ELATLVFMKYRVVDGRYEEI-PLKIVDTGYGVERLAW 230

Query: 236 VLQEKTNNYD------IDLFKHLI----------QASEQVTGM----------------- 262
             Q+    +       +D F+ ++           A+ +V G                  
Sbjct: 231 FTQKTPTAFHAIYGSLVDDFRRMLGVEKPDENVMWAAFRVAGFLDPEDPESLRNYYQTVA 290

Query: 263 KYEGNNIVNHRVIV----------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
              G ++   R I+          DH ++ + ++ DGI+P+N G GY+ R ++RRA+   
Sbjct: 291 SLAGGDVETVRSILTREARLYSVLDHTKTIALMLGDGIVPSNSGEGYLARLVVRRALRQL 350

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
            LL    PL+  L+          +P+L +    I + +  E+ERF   L +   +++  
Sbjct: 351 SLLNAEVPLV-DLVERQARFWMRDFPQLKENLDYILDAVSLEEERFRDVLRKARSIVE-- 407

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
              L + + L  D   +LYD+ G+P +I  +I  +RG A +++     +L   R R    
Sbjct: 408 -RELKRKKRLGVDDLIRLYDSMGVPPEIAAEIAASRG-APVEVPHNFYSLVAARHRGPEK 465

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
             G G   T                +  D+   ++   E R+V  + P        +   
Sbjct: 466 IRGYGFDETG---------------LPRDVEEWARRFGETRRVFHEDP-------YAKAW 503

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
           KA V         V G+ +  V D T FY   GGQ+ DTG    +  + +I DVQK  + 
Sbjct: 504 KARVL-------GVKGRYL--VADSTIFYPTGGGQIHDTGVIRVNNQQYRIIDVQKVGDA 554

Query: 553 IFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           I VH  + ER I       V + ID++ R  +  +H+ TH+L  A   +LG H  Q G+ 
Sbjct: 555 I-VH--VAEREIAAEPGDEVWMEIDWERRYSIMRHHTVTHVLIAAARRVLGRHAWQAGAE 611

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            T +  R D+TH +P+T  +++ +E+ VN +I +   V   ++++ +A       +   G
Sbjct: 612 KTEEKGRLDITHHRPLTRDDIEKLENVVNQVIRERRRVWEDMVDKNEAEEKYGFTIYQGG 671

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                R+R+V V  ED  V +   C GTHV +TGEI    I+S S I+ G+ R+E + G 
Sbjct: 672 VPMEKRLRLVFV--EDWDVEA---CFGTHVRNTGEIGGFKIISYSRIQDGVVRLEYVAGD 726

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKRKLQLN 782
           R   +    +E+L  +   +K  +G    RV       E+  E+ ++ +    K      
Sbjct: 727 RVAIYARELEERLARIGDAVKAPRGQEEARVKGLIASLEQAREDLKRYRDYWVK-----T 781

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           +E+    +   VN +  +  E   K+ ++V + L+K
Sbjct: 782 IEEAYISRARRVNGVKVLAVESLEKDRRTVQEILRK 817


>gi|119872431|ref|YP_930438.1| alanyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|205830187|sp|A1RT13|SYA_PYRIL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119673839|gb|ABL88095.1| alanyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 892

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 220/901 (24%), Positives = 363/901 (40%), Gaps = 188/901 (20%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + + + +R  FL FF++NGH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  IESPAELRERFLRFFERNGHVRIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   Q A++  
Sbjct: 114 PLVISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTQYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           TKE  + Q          DE                   IT  ++ W     G  G C E
Sbjct: 170 TKELGIPQ----------DE-------------------ITFKESMWEGG--GNAGECFE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERM 233
           +                    R +E+  LVFM +E   K  +++ LP   +DTG GLER+
Sbjct: 199 VLV------------------RGLEVATLVFMHYEV--KDGKYVELPLKIVDTGYGLERI 238

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--------------------- 272
             +L+     YD  +F H +    Q  G+     +I+                       
Sbjct: 239 YWLLKGTPTIYDA-VFSHYLAKVRQKVGIPEPPADIMGRASIYFGQMDPEVIGLDKAYDI 297

Query: 273 ----------------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                                  V+ DH R+ S++IADG++P+N G GY+ R ++RR + 
Sbjct: 298 IAEKIGVDPKWLREVVRPQEALYVLADHSRTVSWMIADGVIPSNTGAGYLARLLIRRILK 357

Query: 311 YARLLGYTEPLM----MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
             R++G   PL+    MHL      E+   YPE+  A+ LI E +  E++++ + L    
Sbjct: 358 NLRVVGIDAPLVELFDMHL-----AELKREYPEIWAARDLILELVDLEEKKYREVLKSAP 412

Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
             +   L    +     L+ D    LYD+ G+P +I+ ++                    
Sbjct: 413 AAVKKALEEARRRGRAGLDTDDLVALYDSQGIPPEIVAEV-------------------- 452

Query: 425 QRSRARAHSLGLGSGTTEKIWFSL------KEKYGATQFIGY----DLLRGSKFMKEDRK 474
                 A SLG      +  +  L      +EK   +  +      DL R  +   ED  
Sbjct: 453 ------AKSLGAEVKVPDDFYTKLAARHAKREKKPESPLVEMSKVADLPRTRELFYEDSY 506

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           +   K         + +++ I            G+ V  V DQT FY E GGQ  D G  
Sbjct: 507 MRSFK---------ARVLRVI-----------DGRYV--VLDQTAFYPEGGGQPADRGVL 544

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLL 593
              G   ++ DVQ+           V  G L  E + V+  ID++ R  L   H+ TH+L
Sbjct: 545 KFQGGEAKVVDVQRVG----HVVVHVVEGQLPPEGAEVVGEIDWERRYSLMKMHTGTHVL 600

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             ++  +LG H+ Q G+       R DVTH K  T+ E+  IE+  N ++ +NLPV  +I
Sbjct: 601 IQSIRRVLGPHIWQAGAQKDIPSSRLDVTHYKLPTAEEIAKIEELANKVVQENLPVYVKI 660

Query: 654 MNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           M R +A A     L   G      +RV+ +  ++      A CGGTH+ STGEI L+ I 
Sbjct: 661 MPRNEAEAKYGFILYQGGVVPTREIRVLQIGPDEEPFDIQA-CGGTHLRSTGEIGLIKIQ 719

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EEYR 768
               I  G+ R    TG  A +++   + KL   A  +  S+   V  V+++    EE  
Sbjct: 720 KVERIADGVVRFVFTTGMHALAYIQELERKLAEAAHIIGGSREEFVESVKKLLQRAEEAE 779

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +    +A+    +  E+L   +I    +   ++   D +  K +  A  ++ +  +++ V
Sbjct: 780 RRAKHYAELYAAVVAENLRAEQIG--KYRVAVVELNDDELAKHIALAATRRDKDLVLVFV 837

Query: 829 G 829
           G
Sbjct: 838 G 838


>gi|257387184|ref|YP_003176957.1| alanyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169491|gb|ACV47250.1| alanyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 924

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 237/988 (23%), Positives = 401/988 (40%), Gaps = 220/988 (22%)

Query: 3   NVSSIRTTFLEFFQKNGH---ELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVY 58
           ++  +R TFL FF++  H   +  P ++    +D  ++ T + +  F+ ++ TGQ  P  
Sbjct: 61  SLEEMRETFLSFFEERDHGRVDPYPVAANRWRDD--VLLTQASIYDFQPHVTTGQSPPPS 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG------------YFKERA 106
             +   Q C+R      D+DNVG+T RH   FEM G+ +F              Y+KE  
Sbjct: 119 NPLVVSQPCIRM----QDIDNVGKTGRHTMAFEMGGHHAFNADEGAGYAYEGEVYWKEET 174

Query: 107 IQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           +Q   +L  +E  +D   L                             T  ++ W     
Sbjct: 175 VQYCVELF-EELGVDSSEL-----------------------------TLIEDVWVGG-- 202

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------- 218
           G  GPC E+ + QG                 +E+  LVFMQFEQ    +  +        
Sbjct: 203 GNAGPCFEVIY-QG-----------------LELATLVFMQFEQDPDGDYEMKDGNSYSE 244

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------- 264
           + +  +DTG G+ER   + Q     Y+  ++  +I+      G+ Y              
Sbjct: 245 MDRRVVDTGYGIERWTWMSQGTPTVYEA-IYPEMIEFLRDNAGLDYTDEEDEIVFRAAKL 303

Query: 265 -------EGNNIVNHR-------------------------VIVDHLRSSSFLIADGILP 292
                  E  ++   R                          I DH R+ ++++ DGI+P
Sbjct: 304 AGHMDIDEAEDVEAARDTMAEQLGVETARLVELMEPLEDIYAIADHSRTLAYMLGDGIVP 363

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N G GY+ R ++RR       +G   PL   L+      +G         +  I + +R
Sbjct: 364 SNVGTGYLARMVLRRTKRLVDTVGVDAPLD-ELVDMQADRLG------YDNRDTIRDIVR 416

Query: 353 SEDERFGKTLDRG----LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +E E++ +TLDRG      L D    +  KDE +      +LYD+HG+  D++ +I   R
Sbjct: 417 TEVEKYRETLDRGGRKVRQLAD---DYAEKDEPIPVQELIELYDSHGIQPDMVAEIAAER 473

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
              G+D+                          +  +  + +++G           G + 
Sbjct: 474 ---GVDV-----------------------DVPDNFYGLVADRHG-----------GGQA 496

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-------SGQKVEVVFDQTPFY 521
            +ED  V  +K  +D       +     Q+ E   EAV            +VV DQT FY
Sbjct: 497 FEEDATVPHEKR-LDELPETDRLYYEDQQRMEF--EAVVLEVFDREDGDYDVVLDQTMFY 553

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E GGQ  D G    D +  ++TDVQ    G+ VH    + G   T   +   +D   RR
Sbjct: 554 PEGGGQPPDHGTISTDDVTGEVTDVQVHG-GVIVHTCDEDPG---TGEFVRGQVDATRRR 609

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L  +H+ATH++ H+   +LG HV Q G+    D  R D+ H + I+  ++K IE   N+
Sbjct: 610 RLMRHHTATHVVIHSARQVLGEHVRQAGAQKGTDSSRIDIRHYESISREQVKEIEHRANE 669

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           I+  N  V     +R +A  +    L   G    +++R++ V            CGGTHV
Sbjct: 670 IVMDNAAVTQEWPDRHEAEKAHGFDLYQGGIPTGEQIRLIHV------ADDVQACGGTHV 723

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG+I  + +++   I+ G+ R+    G  A       ++ L   A    V+  +V   
Sbjct: 724 GRTGDIGAIKLLNTERIQDGVIRLTFAAGDAAIDATHEIEDALYETAELYDVATEDVPDT 783

Query: 760 VEEIWEEYR---------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
               ++E++         K QL  A+     + E++   ++AD   +   I + D  EL+
Sbjct: 784 AARFFDEWKARGKEIEDLKEQLAEARASGGGDSEEI---EVADTTAVVQRI-DADMDELR 839

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  +A+   +  G I ++G S    A  ++ V + +      V +  L+ +V GGGGG  
Sbjct: 840 AQANAV---VDQGSIAVLG-SGASGAQFVVAVPDGVAVNAGEV-VGELAGRVGGGGGGPS 894

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
               AQ GGP+ +K D A+A     L++
Sbjct: 895 --DFAQGGGPDADKLDDALADAPEILRQ 920


>gi|256783097|ref|ZP_05521528.1| alanyl tRNA synthetase [Streptomyces lividans TK24]
 gi|289766980|ref|ZP_06526358.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289697179|gb|EFD64608.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 404

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/417 (32%), Positives = 224/417 (53%), Gaps = 45/417 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +  TF+E+++  GH  +  S+L+P     ++FT++GM P      G+  P+ + + 
Sbjct: 2   DTEHVLRTFVEYYEDQGHRRITGSTLLPEPGDPVLFTSAGMHPLTPYLEGRPHPLGRRLV 61

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+R      DLD VG +  H T FEMLG +S G Y   R++  A  LLT+   +D 
Sbjct: 62  NVQRCLRT----TDLDEVGDST-HLTVFEMLGTWSLGDYEGSRSLDWAHRLLTEGLGVDP 116

Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             L+ TVY        D E+ +LW++  G+  ++    T +DN+WS    GPCGP SEIF
Sbjct: 117 GLLHATVYGGGEQVGPDTESLRLWQE-RGVPVER----TVDDNWWSNGPVGPCGPDSEIF 171

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
              G+  P   P   +   R++E+WN V M+  + +      LP+ ++DTG+GLER+A +
Sbjct: 172 LWSGDTPPRSTPTGDD---RWVEVWNHVMMRHRRLDDGRLVPLPQRNVDTGLGLERLAML 228

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ K++ ++ D+F+   +    +  +     +  + RV+ DHLRS+  ++ DG+ P+N G
Sbjct: 229 LQGKSSVFECDVFEPWRRLLPVLWPL-----DEPSFRVVCDHLRSAVVVVGDGVRPSNTG 283

Query: 297 RGYVLRRIMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           RGYVLRR++RR +        +R LG   + L+ H L     +     P L++ +LL+E 
Sbjct: 284 RGYVLRRLVRRLLTVLWRDDPSRGLGDLPDELITHTLDHFRQDGDPGLPGLVR-RLLVE- 341

Query: 350 TLRSEDERFGKTLDRGLVLL--DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
               E+ RF + LDRG  +L        LG+++         L+DTHGLP +++  +
Sbjct: 342 ----EERRFRRLLDRGRNVLARPRFRGPLGEEDF------HYLHDTHGLPRELVTSL 388


>gi|229585297|ref|YP_002843799.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259511818|sp|C3MZC2|SYA_SULIA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228020347|gb|ACP55754.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 900

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 198/818 (24%), Positives = 347/818 (42%), Gaps = 154/818 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +    ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +      L    +DTG G+ER+A +
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAWI 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +            E  R+     
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVK----------FELPRN----- 467

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                       +++L  K   T  I   YD ++  K M E    +    P +       
Sbjct: 468 ------------FYALVAKRHQTSTIKSAYDKVKLPKDMLE---YITALQPTEKLYYKDQ 512

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQK 548
            +++   +G+++       K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK
Sbjct: 513 YMRSF--EGKVL----GVYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK 566

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q 
Sbjct: 567 -VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQA 625

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++ 
Sbjct: 626 GAEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIY 685

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G
Sbjct: 686 EGGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAG 742

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
                ++   + K+   +  +  S   +  R+  I  E
Sbjct: 743 PALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRILNE 780


>gi|70607199|ref|YP_256069.1| alanyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|73920796|sp|P35029|SYA_SULAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68567847|gb|AAY80776.1| alanyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 907

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 226/891 (25%), Positives = 384/891 (43%), Gaps = 171/891 (19%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           V   R  FL FF+K GH ++P   ++      L  T + +V F+   T G  KP    + 
Sbjct: 63  VRESREKFLRFFEKRGHTIVPPKPVVAKWRDDLYLTIASIVDFQPFVTSGLAKPPANPLV 122

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  +  A +  T+
Sbjct: 123 VSQPCIRL----EDVDNVGITFGRHLTTFEMAAHHAFNYPDKQIYWKDETVAFAKEFFTE 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           ED+  FK                   +++W     G  GPC E+ 
Sbjct: 179 ELGIP----------EDQLNFK-------------------ESWWEGG--GNAGPCFEVT 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ+E +  Q+   L    +DTG G+ER+A  
Sbjct: 208 V-------GGL-----------ELATLVFMQYEIRG-QDYVPLKLKIVDTGYGVERIAWF 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------------------IVNHR--- 273
            Q     +   ++ +L+ +  +  G+  E NN                    I  HR   
Sbjct: 249 TQRTPTAFHA-IYGNLVSSFYKKIGVG-EVNNELLKAAAIYAGRIDPDIKETITAHREHL 306

Query: 274 ----------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  ++DH ++ + ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 AKQLGLDLKYVNEELTRAARVFQVLDHTKTIALMLADGLVPSNSGEGYLGRLLIRRALRV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLLG ++  +  L+          +P++++ K  I + + +E+E++  T+ +    +  
Sbjct: 367 LRLLG-SDVKLHELIKDQIDYWKEDFPQMLKNKDYIVDAVINEEEKYNDTISK----IPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +LS L K   ++ D    +YD++G+  D++ D                         AR 
Sbjct: 422 ILSTLSKKSKVDLDELINIYDSNGISPDLILD------------------------EARK 457

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG--VS 489
            ++ +        +  + +K+             +  ++E+RK    K  ID  N   + 
Sbjct: 458 RNININVEIPHNFYSIVAKKHQ------------NALVRENRKDKIPKEVIDEINNKKIE 505

Query: 490 SIVKAIVQQGEIVE---EAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQIT 544
             V    +   +     + +   K  +V DQT FY E GGQ+GDTG   +I    + ++ 
Sbjct: 506 PTVPLYYKDQYLRTFNAKVLLNYKNFLVLDQTTFYPEGGGQIGDTGIIRSIEGNKQAKVI 565

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           D QK  +G+ VH    +   ++ E  +   ID+Q R ++  +H+ TH++  A   +LG H
Sbjct: 566 DTQK-YKGVIVHILDKDSPFIQGE-QVYGEIDWQRRYRIMKHHTVTHVILSATRRVLGEH 623

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             Q G+  T    R DVTH K  T  E++ IED  N II     V    + R +A     
Sbjct: 624 AWQAGAEKTEYKGRLDVTHYKLPTEEEIRKIEDFANYIINDRRKVRPLYIERTEAEMKYG 683

Query: 665 AALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            ++   G      +R++ +E  D        CGGTH+ +TGEI  + IV+   ++ G+ R
Sbjct: 684 VSIYAGGIPEGSEIRLIEIENWD-----IEGCGGTHLINTGEIGGVKIVNVEKLQDGVIR 738

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLK--VSQGNVVGRVEEIWEEYRKLQ-LIHAKRKL 779
           +E + G    ++   QDEKL  ++  L   VSQ NV  R+++  EEY  LQ L+   RK+
Sbjct: 739 LEYVAGDMVSNYARQQDEKLNEISKLLNSPVSQINV--RLKKHLEEYENLQNLLDKYRKI 796

Query: 780 QLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLVG 829
            L+       +I+      +I+ + +D + +K VM  +    Q+ +I + G
Sbjct: 797 VLDRIQEIAERISVNGITIYILRDFIDEQLIKEVMRKITSNNQNIVISIRG 847


>gi|327310071|ref|YP_004336968.1| alanyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326946550|gb|AEA11656.1| alanyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 893

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 216/885 (24%), Positives = 370/885 (41%), Gaps = 159/885 (17%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + ++  +R  FL FF++ GH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  VDSIRDLRERFLSFFERRGHTRIKRYPVVARWRDDVFLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            +T  Q  +R      D+D VGR+ RH T FEM+ + +F   + ++ +   W   T E+ 
Sbjct: 114 PLTISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFN--YPDKYVY--WIGETTEY- 164

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                           A++ + K  G++ D++   T  ++ W     G  G   E+    
Sbjct: 165 ----------------AYEFFTKELGIAEDEV---TFKESVWEGG--GNAGESFEVLV-- 201

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVLQ 238
                           R +E+  LVFM +E   K  +++ LP   +DTG GLER+  + +
Sbjct: 202 ----------------RGLEVATLVFMHYEV--KDGKYVELPLKIVDTGYGLERIYWMAK 243

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-------------------------- 272
                YD  +F   + A+ Q  G+     +++                            
Sbjct: 244 GSPTVYDA-VFGPFLSAARQRLGVPEPPADLLGKASVFFGQMDPEVLGLEKAYDEVAKRI 302

Query: 273 -----------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                             V+ DH R+ S+++ADG++P+N G GY+ R ++RRA+    L 
Sbjct: 303 GVSPQEFRDVMRPQEALYVLADHSRTVSWMVADGVVPSNTGAGYLARLLIRRALRGLWLA 362

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G   PL+  L       +   YPE+ +++ +I E +  E++++ + L     L+   L  
Sbjct: 363 GIEAPLV-ELFDLHLKYLKEDYPEVWESRDVILELIDLEEKKYKEVLKAAPSLVKKALEK 421

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR--ARAHS 433
            G+   L+ +   +LYD+ G+P ++ +D   AR L G D     +  ++  SR  AR  +
Sbjct: 422 AGR-RALSAEDLVELYDSFGVPPEVARD--AARKL-GAD----AEVPDDFYSRLAARHQA 473

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
              G G   K+   L +          DL R  +   ED      +         S +++
Sbjct: 474 RKAGGGEAAKVPIELAKVA--------DLPRTRELFYEDPYRRSAR---------SKVLR 516

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            I            G+ V  V D T FY E GGQ  D G     G   ++ DVQ+    +
Sbjct: 517 VI-----------DGRYV--VLDATVFYPEGGGQPADRGVLRHSGGEAKVVDVQRLG-NV 562

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +H  ++E    R    +   ID+  R  L   H+ TH+L  ++  +LG H+ Q G+   
Sbjct: 563 IIH--VIEGPAPREGEEVYGEIDWDRRISLMRMHTGTHVLIQSIRRVLGKHIWQAGAQKD 620

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
               R DVTH K  T  E+  IE   N ++  NLPV   IM R +A A     +   G  
Sbjct: 621 VPYSRLDVTHYKLPTEKEIAEIERLANQVVMSNLPVKALIMPRNEAEAKFGFIIYQGGVV 680

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +R++ +  ED      A CGGTH+SSTGEI  + IV    I  G+ R    TG+ A
Sbjct: 681 PAREIRILRIGPEDSPYDVQA-CGGTHLSSTGEIGPIKIVRVERIADGVIRFIFTTGKYA 739

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNV-------VGRVEEIWEEYRKLQLIHAKRKLQ-LNV 783
             ++   +  L ++A  L   + +V       + +  ++   Y+KL   +A+   + L V
Sbjct: 740 VDYIQKMEADLSAVAKALGSGKEDVPAQLAKYLDKAADLERRYKKLAASYAELLAERLRV 799

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           E L     AD+ ++     E+D ++L   + A        ++++V
Sbjct: 800 EGLPK---ADLAYL-----ELDDEDLAKAVAAHATSKNPRLLLVV 836


>gi|126460596|ref|YP_001056874.1| alanyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|189082115|sp|A3MXP1|SYA_PYRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126250317|gb|ABO09408.1| alanyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 896

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 197/788 (25%), Positives = 331/788 (42%), Gaps = 151/788 (19%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + ++  +R  FL FF+++GH  +    ++      +    + +  F+   T G   P   
Sbjct: 59  VESLRDVRERFLSFFERHGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 118

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            +T  Q  +R      D+D VGR+ RH T FEM+ + +F    K                
Sbjct: 119 PLTISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDK---------------- 158

Query: 120 LDQRRLYITVYDEDEE-AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                 Y+   DE  E A++ + +  G+  ++I   T  ++ W     G  G C E+   
Sbjct: 159 ------YVYWIDETTEYAYRFFTEELGIPPEEI---TFKESMWEGG--GNAGECFEVLV- 206

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVL 237
                            R +E   LVFM +E ++   +++ LP   +DTG GLER+  ++
Sbjct: 207 -----------------RGLEAATLVFMHYEVKDG--KYVELPLKIVDTGYGLERIYWLI 247

Query: 238 QEKTNNYDIDLFKHLIQASEQV-----------TGMKYEGN------------NIVNHR- 273
           +     YD     +L +  E++               Y G             +I+  + 
Sbjct: 248 KGTPTIYDAVFGPYLAKVRERLGVPEPPRDVMAKASIYFGQMDPEVISLDKAYDIIAEKI 307

Query: 274 ------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                             V+ DH R+ +++IADG++P+N G GY+ R ++RRA+    L 
Sbjct: 308 GVDGKWLREVVKPQEALYVLADHSRTVAWMIADGVIPSNSGAGYLARLLIRRALRGLMLA 367

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS- 374
           G   PL+  L      E+   YPE+ +A+ LI E +  E++++ + L     ++   L  
Sbjct: 368 GVDAPLV-ELFDLHLKELRYDYPEVWEARSLILELVDMEEKKYREVLKSAPAVVKRALEE 426

Query: 375 --HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL---AGIDIISFNQALEEQRSRA 429
               GK  +   D+   LYD++GLP +++ +   + G+      D  S   +   +R + 
Sbjct: 427 NRRRGKAGLDKEDLV-TLYDSYGLPPEVVAEAAKSMGIEVKVPDDFYSLLASRHVRREKG 485

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R  +L   +                      DL R  +   ED  +   K         +
Sbjct: 486 REATLVEMAKVA-------------------DLPRTRELFYEDAYMRTFK---------A 517

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
            +++ I            G+ V  V DQT FYAE GGQ  DTG     G   ++ DVQ+ 
Sbjct: 518 KVLRVI-----------DGKYV--VLDQTAFYAEGGGQPADTGVLRHSGGVAKVVDVQRV 564

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH  +VE  + +    +V  +D++ R  L   H+ TH+L  ++  +LG H+ Q G
Sbjct: 565 GH-VIVH--VVEGDVPQEGSEVVGEVDWERRYALMKMHTGTHVLIQSIRRVLGPHIWQAG 621

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +       R DVTH K  T  E+  IE   ND++ ++LPV  ++M R +A A     L  
Sbjct: 622 AQKDIPFSRIDVTHYKLPTPEEVAKIERLANDVVQRDLPVYVKVMPRNEAEAKYGFILYQ 681

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G      +RVV +  +D      A CGGTH+  TGEI L+ +     I  G+ R    T
Sbjct: 682 GGVVPAREIRVVQIGPDDEPYDVQA-CGGTHLRRTGEIGLIKVHKVERIADGVVRFIFTT 740

Query: 728 GQRARSHL 735
           G  A +++
Sbjct: 741 GPHAVAYV 748


>gi|259015945|gb|ACV89255.1| alanyl-tRNA synthetase [Blattella germanica]
          Length = 252

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/241 (43%), Positives = 144/241 (59%), Gaps = 25/241 (10%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+ F L
Sbjct: 17  TVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTEVFKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +        + DEE  ++W  + G+    ++  +  DNFW M ETGPCGPC
Sbjct: 77  PADRLYVTYFGGDKAAKLEPDEECRQIWINL-GVPPAHVLPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           SE+ FD+     GG   +   +++    +EIWNLVF+QF ++       LPK  ID G+G
Sbjct: 136 SELHFDR----IGGRDAAHLVNQDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHIDCGLG 191

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVDHLR 280
           LER+ +V+Q+K  NYD DLF  L  + ++ TG   Y+G           + +RV+ DH R
Sbjct: 192 LERLVSVIQQKRANYDTDLFMPLFDSIQKGTGAPSYKGRVGEEDVDGMDMAYRVLADHAR 251

Query: 281 S 281
           +
Sbjct: 252 T 252


>gi|323477850|gb|ADX83088.1| alanyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 900

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 197/818 (24%), Positives = 347/818 (42%), Gaps = 154/818 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +P   ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +      L    +DTG G+ER+A V
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAWV 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +            E  R+     
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVK----------FELPRN----- 467

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                       +++L  K   T  I   YD ++  K M E    +    P +       
Sbjct: 468 ------------FYALVAKRHQTSTIKSAYDKVKLPKDMLE---YITALQPTEKLYYKDQ 512

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQK 548
            +++   +G+++       K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK
Sbjct: 513 YMRSF--EGKVL----GVYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK 566

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q 
Sbjct: 567 -VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQA 625

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++ 
Sbjct: 626 GAEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIY 685

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G
Sbjct: 686 EGGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAG 742

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
                ++   + K+   +  +  S   +  R+  +  E
Sbjct: 743 PALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNE 780


>gi|15921648|ref|NP_377317.1| alanyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|21264016|sp|Q971J4|SYA_SULTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15622435|dbj|BAB66426.1| 904aa long hypothetical alanyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 904

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 229/909 (25%), Positives = 387/909 (42%), Gaps = 178/909 (19%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           V   R  FL+FF+K GH ++P   ++      L  T + +V F+   T G   P    + 
Sbjct: 63  VREARQKFLKFFEKKGHTIIPPKPVLARWREDLYLTIASIVDFQPFVTSGIVPPPANPLV 122

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  ++L+ +   +
Sbjct: 123 LSQPCIRL----EDVDNVGVTFGRHLTTFEMAAHHAFNYPDKQIYWKDETVELSKEFFVE 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  + +  L                                +++W     G  GP  E+ 
Sbjct: 179 EIGIPEEEL-----------------------------NYKESWWEGG--GNAGPSFEVT 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI-DTGMGLERMAT 235
                   GGL           E+  LVFMQ+E   K   ++  K+ I DTG G+ER+A 
Sbjct: 208 V-------GGL-----------ELATLVFMQYEI--KDGNYVPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNY-----------------------------------DIDLFKHLIQASEQVT 260
             Q+    +                                   D D  + + +  E+V 
Sbjct: 248 FTQKTPTAFHAIYGNLVYTFFNKIGAPLVDDELLKTAAILAGRIDPDKPETIKRHREEVA 307

Query: 261 -----GMKYEGNNIVNH-RV--IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                 +KY    +    RV  ++DH ++ + ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KKLGLDLKYVDQELTRAARVFQVLDHTKTIALMLADGLVPSNSGEGYLGRLLIRRALRVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLLG ++  +  L+          +P+L++ K  I + +  E ERF +TL +    +   
Sbjct: 368 RLLG-SDIKLYELVKEQIEYWKEDFPQLLKNKDYILDVVNLEQERFNETLSK----ISLT 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L + + ++ D   KLYD++G+P D++ +          +I   N    E +     +
Sbjct: 423 ASSLSRRKEISVDDLVKLYDSNGIPPDLLVE----------EIRKINP---EIKVEVPYN 469

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
             GL +   + +                        +K+ +K    K  IDL   +    
Sbjct: 470 FYGLVAKRHQTV-----------------------PLKDTKKEKLPKDVIDLAENLPPTK 506

Query: 493 KAIVQ---QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQK 548
           K   +   +     + VS  K  +V DQT FY E GGQ+GDTG    + G   Q+ D QK
Sbjct: 507 KLYYEDQYKRSFTAKVVSVYKNYLVLDQTTFYPEGGGQIGDTGIIKDEKGNTYQVVDTQK 566

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             + IF  H + +   L+    +   ID+Q R ++  +H+ TH++  A   +LG HV Q 
Sbjct: 567 VKDVIF--HILDKEPSLKEGDEVYGEIDWQRRYRIMKHHTVTHVILSAARKVLGEHVWQA 624

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP   R D+TH K  T  E+K IED  N II     V   I+NR +A      ++ 
Sbjct: 625 GAEKTPQKGRLDITHYKLPTEEEIKKIEDLANYIINDRRSVRPLIINRTEAEMKYGVSIY 684

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   V  +E +D  +     CGGTH+S+T EI  L I++   I+ G+ R+E + G
Sbjct: 685 AGGVPEGADVRLIEIKDWDIEG---CGGTHLSNTSEIGALKIINVEKIQDGVIRLEYVAG 741

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----------WEEYRKLQLIHAKRK 778
                +   +++KLK ++  L  S   +  R++              +YRK+ L      
Sbjct: 742 DVVAQYARQEEDKLKEISRQLSTSPEQIEVRLKRFLEEYKEKEELLNQYRKMML------ 795

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
               +E++S  K   VN ++  I  +  +EL+   +A++K   +   ++V IS +   +V
Sbjct: 796 --QEIENIS--KKETVNGVTIYIINLFDEELRK--EAMRKLTMNQKSIVVNISNKGNNNV 849

Query: 839 LIVVTEDLL 847
           + + T + L
Sbjct: 850 VEIATSNDL 858


>gi|323475119|gb|ADX85725.1| alanyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 900

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 197/818 (24%), Positives = 347/818 (42%), Gaps = 154/818 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +P   ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +      L    +DTG G+ER+A V
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAWV 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +            E  R+     
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVK----------FELPRN----- 467

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                       +++L  K   T  I   YD ++  K M E    +    P +       
Sbjct: 468 ------------FYALVAKRHQTSTIKSAYDKVKLPKDMLE---YITALQPTEKLYYKDQ 512

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQK 548
            +++   +G+++       K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK
Sbjct: 513 YMRSF--EGKVL----GVYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK 566

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q 
Sbjct: 567 -VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQA 625

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++ 
Sbjct: 626 GAEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIY 685

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G
Sbjct: 686 EGGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVGG 742

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
                ++   + K+   +  +  S   +  R+  +  E
Sbjct: 743 PALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNE 780


>gi|327400660|ref|YP_004341499.1| alanyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327316168|gb|AEA46784.1| alanyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 903

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 243/973 (24%), Positives = 400/973 (41%), Gaps = 209/973 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+  +R  +L FF+K GH  +    ++      +  T + +  F+   T G   P    +
Sbjct: 60  NLDEMREYYLSFFEKRGHARIDRYPVVARWRDDIYLTIASIADFQPFVTSGVAPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGRT RH T FEM+ + +F       Y+K   ++L  +LL +
Sbjct: 120 TISQPCIRM----DDLDSVGRTGRHLTLFEMMAHHAFNYPEKEIYWKNETVKLCTELLEE 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                       G+  + +I     +  W  A  G  GPC E  
Sbjct: 176 ---------------------------LGVPKENVI---YKEEPW--AGGGNAGPCLE-- 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERF-ILPKMSIDTGMG 229
                 I GGL           E+  LVFM  E       + K ER+  +    +DTG G
Sbjct: 202 -----AIVGGL-----------ELATLVFMNLEVSPDGDIEIKGERYRKMDNYIVDTGYG 245

Query: 230 LERMATVLQEKTNNYD------IDLF---------------KHLIQASEQVTGM--KYEG 266
           LER     Q     YD      +D                 + +I  S ++ G+     G
Sbjct: 246 LERFVWASQGTPTVYDAIFPEVLDFIEENSNISFSRKDEEVRRIIAESSKLAGVMSSLRG 305

Query: 267 NNIVNHRV-------------------------IVDHLRSSSFLIADGILPANEGRGYVL 301
             +   R+                         + DH R+  F++ DG++P+N G GY+ 
Sbjct: 306 KALEEFRLNAANRLGISVDELVSIVSPLEKVYALADHTRTILFMLGDGLIPSNAGGGYLA 365

Query: 302 RRIMRRAMCYARLLGYTEPL--MMHLLPALCTEMGSAYP-ELIQAKLLIEETLRSEDERF 358
           R ++RR++  A  L  +  L  ++ L   L        P E IQ      E L  E++R+
Sbjct: 366 RLMIRRSLRLAEELNLSATLFDLVELHRRLLKPFTFEIPMETIQ------EILELEEKRY 419

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+++GL +++ V++   K + +  D   + YD+HG+P +++  I              
Sbjct: 420 RATIEKGLRMVERVVA---KKKRIEKDDLIEFYDSHGIPAELVAKI-------------- 462

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
                       A   G+     E  +  L  ++   +    +      +          
Sbjct: 463 ------------AEEKGVEVEMPEDFYAELASRHVKAEKKEEEKKLKGTY---------- 500

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
            PP +     SS++       E   E +  +   V+ D+T FY E+GGQ  DTG  I + 
Sbjct: 501 -PPTEKLYYDSSVL-------EFEAEVIGVEGEYVILDRTAFYPESGGQDNDTGYFIVNS 552

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ + DV ++  G+ VH     +G L     +   ID   R + + +HSATHLL +A+ 
Sbjct: 553 TKIPVVDVFEE-NGVVVHKI---KGSLSAGTKVKGIIDRGRRLRHTRHHSATHLLLYAIQ 608

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H  Q+G+    +  R DVTH K  +  E+  IE   N  +  N PV    M+R +
Sbjct: 609 QVLGKHAWQSGARKEWEKARLDVTHYKRPSEEEIYEIERIANREVMANKPVTWEWMDRIE 668

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +RVV V     G    A CGGTH SSTGEI ++ I+   SI
Sbjct: 669 AERRYGFRLYQGGVPPGREIRVVRV-----GDDVQA-CGGTHCSSTGEIGVIKILKVESI 722

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ R E   G+ A   +   +  LK  +  L+V    +   V+  ++E+++      K
Sbjct: 723 QDGVIRFEFAAGEAALEQIAKNEALLKEASRILRVEPTILPKTVQRFFDEWKE-----QK 777

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQK---KIQSGIIML--VGI 830
           ++++  + +++  K      ++    E DS K +  V+DA      KI S +  L  VG 
Sbjct: 778 KEIERLLAEIARLKAES---LAEKAEEFDSIKVVAEVIDAPMNELVKIGSELANLGCVGS 834

Query: 831 SKEKKASVLIVVTEDLLDRFNAVD--LARLSAKVLG---GGGGGGRPHMAQSGGPNGNKA 885
              ++  V +V        F+ VD   AR   K +G    G GGG+P++AQ  G      
Sbjct: 835 LMSQREGVRLVT-------FSGVDGIDARELIKEIGRHIKGSGGGKPNLAQGAGQRALTR 887

Query: 886 DQAIAGVASFLKK 898
           D+ +  + +FL++
Sbjct: 888 DELMDIIFTFLRQ 900


>gi|227828028|ref|YP_002829808.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|238620257|ref|YP_002915083.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259511819|sp|C4KIK1|SYA_SULIK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|259511821|sp|C3MXH6|SYA_SULIM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|227459824|gb|ACP38510.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|238381327|gb|ACR42415.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 900

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 195/817 (23%), Positives = 343/817 (41%), Gaps = 152/817 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +    ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRISPKPVLARWRDDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +      L    +DTG G+ER+A +
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAWI 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  +       + F          A+ H
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKS------VKFELPRNFYALVAKRH 476

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                + T + ++  +K        +  D+L     ++   K+  +              
Sbjct: 477 Q----TSTIKSVYDKVK--------LPKDMLEYITALQPTEKLYYKD------------- 511

Query: 493 KAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
               Q     E  V G  K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 512 ----QYMRSFEGKVLGVYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
               ++   + K+   +  +  S   +  R+  +  E
Sbjct: 744 ALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNE 780


>gi|229579660|ref|YP_002838059.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|259511823|sp|C3N7E3|SYA_SULIY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228010375|gb|ACP46137.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
          Length = 900

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 197/818 (24%), Positives = 345/818 (42%), Gaps = 154/818 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +    ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +      L    +DTG G+ER+A +
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAWI 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +            E  R+     
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVK----------FELPRN----- 467

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                       +++L  K   T  I   YD ++  K M E    +    P +       
Sbjct: 468 ------------FYALVAKRHQTSTIKSAYDKVKLPKDMLE---YITALQPTEKLYYKDQ 512

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQK 548
            +++   +G+++       K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK
Sbjct: 513 YMRSF--EGKVL----GVYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK 566

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q 
Sbjct: 567 -VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQA 625

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++ 
Sbjct: 626 GAEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIY 685

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G
Sbjct: 686 EGGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAG 742

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
                ++     K+   +  +  S   +  R+  I  E
Sbjct: 743 PALVDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNE 780


>gi|229581674|ref|YP_002840073.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|259511822|sp|C3NG91|SYA_SULIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228012390|gb|ACP48151.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
          Length = 900

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 197/818 (24%), Positives = 345/818 (42%), Gaps = 154/818 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +    ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPTNPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +      L    +DTG G+ER+A +
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAWI 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +            E  R+     
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVK----------FELPRN----- 467

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                       +++L  K   T  I   YD ++  K M E    +    P +       
Sbjct: 468 ------------FYALVAKRHQTSTIKSAYDKVKLPKDMLE---YITALQPTEKLYYKDQ 512

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQK 548
            +++   +G+++       K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK
Sbjct: 513 YMRSF--EGKVL----GVYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK 566

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q 
Sbjct: 567 -VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQA 625

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++ 
Sbjct: 626 GAEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIY 685

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G
Sbjct: 686 EGGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAG 742

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
                ++     K+   +  +  S   +  R+  I  E
Sbjct: 743 PALVDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNE 780


>gi|11499836|ref|NP_071080.1| alanyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334348|sp|O28029|SYA_ARCFU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2648270|gb|AAB89002.1| alanyl-tRNA synthetase (alaS) [Archaeoglobus fulgidus DSM 4304]
          Length = 906

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 233/954 (24%), Positives = 393/954 (41%), Gaps = 213/954 (22%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +
Sbjct: 61  ELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGRT RH T FEM+ +  F++ G   Y+K   +    +LL +
Sbjct: 121 TISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNE 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                     + V  ED                    I   +  W  A  G  GPC E  
Sbjct: 177 ----------LGVKKED--------------------IVYKEEPW--AGGGNAGPCLE-- 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                 I GGL           E+  LVFM  E+  + +  I       +    +DTG G
Sbjct: 203 -----AIVGGL-----------EVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYG 246

Query: 230 LERMATVLQEKTNNYDI---------------------DLFKHLIQASEQVTGM------ 262
           LER     +     YD                      +  + ++  S ++ G+      
Sbjct: 247 LERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRG 306

Query: 263 -------------------KYEGNNIVNHRV--IVDHLRSSSFLIADGILPANEGRGYVL 301
                              + EG  +   +V  + DH R   F++ DG++P+N G GY+ 
Sbjct: 307 ERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLA 366

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ--AKLL----------IEE 349
           R ++RR++  A  L                E+G    +L++   K+L          ++E
Sbjct: 367 RLMIRRSLRLAEEL----------------ELGLDLYDLVEMHKKILGFEFDVPLSTVQE 410

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L  E ER+  T+ +G  L++ ++    K   L  D   +LYD+HG+P+++   I   +G
Sbjct: 411 ILELEKERYRTTVSKGTRLVERLVERKKK---LEKDDLIELYDSHGIPVELAVGIAAEKG 467

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
                       L ++ S+A            ++   +L+ +Y AT+ + YD        
Sbjct: 468 AEVEMPKDIYAELAKRHSKAE---------KVQEKKITLQNEYPATEKLYYD-------- 510

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             D  +L                       E   E +  +   V+ +++ FY E+GGQ  
Sbjct: 511 --DPTLL-----------------------EFEAEVIGVEGDFVILNRSAFYPESGGQDN 545

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I +G + ++ DV  +A+G+ +H     +  + T++  V+  D + R     +HSA
Sbjct: 546 DVGYLIANGGKFEVVDVL-EADGVVLHVVKGAKPEVGTKVKGVIDSDVRWRHMR--HHSA 602

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+L ++L  +LG+HV Q G+       R DVTH +  +  E+K IE   N  I  N P+
Sbjct: 603 THVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPI 662

Query: 650 VTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               M+R +A       L   G     ++RVV V     G    A CGGTH  STGEI +
Sbjct: 663 KWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQV-----GDDVQA-CGGTHCRSTGEIGM 716

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           L I+   SI+ G+ R E   G+ A   +   +  L+  +S L+V    +   VE  +EE+
Sbjct: 717 LKILKVESIQDGVIRFEFAAGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEW 776

Query: 768 R--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           +  + ++   K  +     D+   +  + + M  +++EV   D + L+ + + L +K   
Sbjct: 777 KDQRKEIERLKSVIADLWADILMERAEEFDSMK-VVAEVVDADMQALQKLAERLAEKGAV 835

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           G +M  G  K     V +V       +++A +L R   +V   G GGGR  +AQ
Sbjct: 836 GCLMAKGEGK-----VFVVTFSG--QKYDARELLREIGRV-AKGSGGGRKDVAQ 881


>gi|227830765|ref|YP_002832545.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|284998279|ref|YP_003420047.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|259511820|sp|C3MR87|SYA_SULIL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|227457213|gb|ACP35900.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|284446175|gb|ADB87677.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 900

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 197/818 (24%), Positives = 345/818 (42%), Gaps = 154/818 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +    ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  TK
Sbjct: 122 VSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFTK 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +           E+E  FK                   +++W     G  GPC E+ 
Sbjct: 178 ELGIP----------EEELNFK-------------------ESWWEGG--GNAGPCLEVT 206

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                   GGL           E+  LVFMQ++  +      L    +DTG G+ER+A +
Sbjct: 207 V-------GGL-----------ELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAWI 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRVIV- 276
            Q+  + +   ++ +L+       G+ Y                     + I  HR +V 
Sbjct: 249 TQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMVS 307

Query: 277 ------------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                   DH ++   ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  +
Sbjct: 368 RLLK-SDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            S L +   +  +   ++YD++G+P D++++ L  + +            E  R+     
Sbjct: 423 ASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVK----------FELPRN----- 467

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                       +++L  K   T  I   YD ++  K M E    +    P +       
Sbjct: 468 ------------FYALVAKRHQTSTIKSAYDKVKLPKDMLE---YITALQPTEKLYYKDQ 512

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQK 548
            +++   +G+++       K  ++ D+T FY E GGQLGDTG  I +    R ++ D QK
Sbjct: 513 YMRSF--EGKVL----GVYKNYLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK 566

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q 
Sbjct: 567 -VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQA 625

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++ 
Sbjct: 626 GAEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIY 685

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G
Sbjct: 686 EGGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAG 742

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
                ++     K+   +  +  S   +  R+  I  E
Sbjct: 743 PALVDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNE 780


>gi|159042453|ref|YP_001541705.1| alanyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|205830009|sp|A8MBI2|SYA_CALMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157921288|gb|ABW02715.1| alanyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 899

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 198/815 (24%), Positives = 336/815 (41%), Gaps = 153/815 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+K GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 63  SIKDVRERFLSFFEKRGHTRVARYPVVARWRNDVYLVGASIYDFQPWVTEGVVPPPANPL 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ +  F+F G   Y+    ++ A +  T+
Sbjct: 123 TISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNFPGKEIYWINETVEYAHEFFTR 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E            + +DE                   +T  +N W     G  G   E+ 
Sbjct: 179 ELG----------FRDDE-------------------VTYKENIWEGG--GNAGESFEVL 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM +     + R  +P   +DTG GLER+  V
Sbjct: 208 V------------------RGLELATLVFMHYRVIGDEYRE-MPIRIVDTGYGLERIYWV 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMK--------------------------------- 263
           L  K   Y+  +F+  +  + Q+ G+                                  
Sbjct: 249 LTGKPTIYEA-VFEGFLNKARQLLGLPKPDEKVLASLAIHMGQLDPEVLALDKAYVEVAK 307

Query: 264 ---YEGNNIVNH-------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
               + + ++N         V+ DH R+ S++I DG++P+N G GY+ R ++RR + Y  
Sbjct: 308 RIGIDSSELINFIKPQEALYVLADHSRTVSWMINDGVIPSNSGVGYLARLLIRRMLKYMH 367

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           ++G   PL   +       + + YPEL ++  LI + +  E+ ++   + +   L+  + 
Sbjct: 368 VIGAQVPLT-EIFNTHLNYLINDYPELKESMQLILDLVDLEEAKYKSAISQLPKLISRIK 426

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
             L  ++++N      LYD+HG+P ++++D    RG+      +F + L  +  +     
Sbjct: 427 GELTINDLIN------LYDSHGIPPEVVRDEAAKRGVKVNVPDNFYEMLAARHQKPAKGE 480

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
            G     T            A   I  DL    +   ED              G + ++K
Sbjct: 481 EGNRLDVT------------ADDVI--DLPPTRELFYEDTYAF---------EGKAKVLK 517

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            I  +G+ +           V D T FY E GGQ  D G    +G+  ++ DVQ+    +
Sbjct: 518 VI--KGKYI-----------VLDSTIFYPEGGGQPADRGVLRFNGVEAKVVDVQRVGP-V 563

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            VH  +++         + + ID + R  L   H+ TH+L  ++  +LG HV Q G+   
Sbjct: 564 IVH--VIDGPTPGVGDVVEMRIDSERRLGLMRMHTGTHILLQSIRRVLGKHVWQAGAQKD 621

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
               R DVTH +  T  E+K IE+  N+++  +LPV   +M R +A A     +   G  
Sbjct: 622 IPLSRLDVTHYRLPTPDEVKRIEELANEVVLSDLPVKAELMPRNEAEAKYGFIIYQGGVV 681

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               VR+V V  E    +    CGGTH+  T  I L+ IV    I+ G+ R    TG+ A
Sbjct: 682 PGGEVRIVKVG-EGNDTYDVEACGGTHLDRTSRIGLIKIVKVDKIQEGVIRFIFTTGKYA 740

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
             ++   + KL S AS L+V +  V   V+ + +E
Sbjct: 741 LDYVRNLEGKLDSAASKLRVGRDEVDEAVDRLIKE 775


>gi|325959974|ref|YP_004291440.1| alanyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325331406|gb|ADZ10468.1| alanyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 905

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 225/953 (23%), Positives = 395/953 (41%), Gaps = 179/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  I+  F +FF+  GH  +    ++       +    + +  F+   T G  +P    
Sbjct: 52  DLYQIQKEFNDFFKARGHTPITRYPVLAKRWRDDVFLVGASIYDFQPWVTSGLVEPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M  + +F       Y+K+  ++   D + 
Sbjct: 112 LVIAQPSIRL----NDVDNVGRTGRHMTCFTMGAHHAFNKPDDEVYWKDETVKYCHDFIE 167

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                        G+   +I  I   +++W     G  GPC EI
Sbjct: 168 H---------------------------IGIDPSEITYI---ESWWEGG--GNAGPCYEI 195

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                 C+ G            +E+  LVF+Q++   +  + I P   +DTG GLER A 
Sbjct: 196 ------CVRG------------VELATLVFIQYKTTAEGLKEI-PLKIVDTGYGLERFAW 236

Query: 236 VLQEKTNNYD---------------IDLFKHLIQASEQVTGM------------------ 262
           + Q     YD               ++L + ++  + ++ GM                  
Sbjct: 237 ISQGTPTAYDASFGPVISQIKELAGVELNEAVLAENARIAGMMDIEDIADLKELRRRVAD 296

Query: 263 ---------KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                    K     +    VI DH R   F++ADG++P+N   GY+ R I+RR + + +
Sbjct: 297 KLGITMEELKNATEPMEAVYVIADHTRCLCFMLADGVIPSNVKEGYLARLILRRTIRFMK 356

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            LG  E L   ++      +   YPE+ + K  I   +  E++R+ KT+ +G  L+   +
Sbjct: 357 DLGLKESLG-DIMEIQLEFLSKTYPEIEERKQHILNVVTLEEKRYTKTVSKGKQLVKKTI 415

Query: 374 SHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL-AGIDIISFNQALEEQRSRAR 430
             L K+  E +  +   KLYD+HG+P + +++I       A +    +    EE  +  +
Sbjct: 416 QDLKKENLEEIPVETLIKLYDSHGMPPETIEEIASEENFNAAVPDNFYTLVAEEHEAEKK 475

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                            ++ K+  T+ + Y+  R ++F                      
Sbjct: 476 DKKQ------------DIEIKFIETELVFYEHSRKTEF---------------------- 501

Query: 491 IVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQ 547
                       E  + G  +  VV D+T FY E GGQ  D G     G+  +  +  V+
Sbjct: 502 ------------EAGLLGFYENNVVLDRTIFYPEGGGQPSDIGYIRVKGNKEKYNVLSVE 549

Query: 548 KKAEGIFVHH---AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           K  +G+ +H      +E+        +  +ID + R  L+ NH+ATHL+  A   +LG H
Sbjct: 550 K-IQGVVLHQMEPEDIEKLKPFAGSRITGSIDPERRTSLTQNHTATHLIVAAAREVLGDH 608

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q G+       R D++H K I+  EL+ IE   N  + +N  V T  MNR  A     
Sbjct: 609 VWQAGAQKGVKKSRIDLSHYKRISITELREIEKIANSYVMKNYQVHTSWMNRTKAEKKYG 668

Query: 665 AALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             L   G      +R V ++  D        C GTHV  TGEI L+ I     I+ G+ R
Sbjct: 669 FKLYQGGVVPGANIRTVKIDEID-----VQACAGTHVKYTGEIGLIKITRTERIQDGVER 723

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL- 781
           +E   G+ A   +   DE LK  +   KV    +    E  ++E++  +  + K K ++ 
Sbjct: 724 LEFSAGKSAIDAVQRNDEILKESSEIFKVPLEQLPKTCERFFKEWKAYKNENTKLKDEIA 783

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                ++ DL+  +I+D+  ++ ++ + D  EL  ++  + + +    ++++G ++ K  
Sbjct: 784 TLKVGSIRDLAV-EISDLTVLTQLM-DADMNELIGIVTDMTEDVDGVDVVVIGNTEGK-- 839

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++   +   L+R   ++     A  + GGGGGGRP++AQ  G N    ++A+
Sbjct: 840 -IVGGSSAKALERGLKINNIIKDAAAMLGGGGGGRPNLAQGAGKNHEMMEEAL 891


>gi|254717706|ref|ZP_05179517.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261219549|ref|ZP_05933830.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|260924638|gb|EEX91206.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 117

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/117 (71%), Positives = 98/117 (83%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+E
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITRE 117


>gi|284161204|ref|YP_003399827.1| alanyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011201|gb|ADB57154.1| alanyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 902

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 219/833 (26%), Positives = 345/833 (41%), Gaps = 187/833 (22%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +
Sbjct: 63  DLKEMREYYLRFFEERGHTRIDRYPVVARWRDDIYLTIASIADFQPFVTSGVAPPPANPL 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD++G+T RH + FEM+ + +F       Y+K   +Q   +LL  
Sbjct: 123 TISQPCIRM----DDLDSIGKTGRHLSLFEMMAHHAFNYPNQHIYWKNETVQYCTELLQS 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                     + V  ED                    I   +  W  A  G  GPC E  
Sbjct: 179 ----------LGVKLED--------------------IVYKEEPW--AGGGNAGPCLE-- 204

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------------EQQNKQERFILPKMSI 224
                 I GG           IE+  LVFM               +  K E +I     +
Sbjct: 205 -----AIVGG-----------IELATLVFMNLVEDPNGDIVVKGSRYRKMENYI-----V 243

Query: 225 DTGMGLERMATVLQEKTNNYDI-------------DLFK---HLIQASEQVTGMKYE--G 266
           DTG GLER     +     YD              D+ K    ++  S ++ G+  E  G
Sbjct: 244 DTGYGLERFVWASKGTPTVYDAVFPEVVEFILKNSDVEKPDERIVAESSKLAGIMGELSG 303

Query: 267 NNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYVL 301
             ++  R                          + DH R+  F++ DG++P+N G GY+ 
Sbjct: 304 EKLLEFRKNLSNRLGVSLEELERVLIPMEMVYALADHTRAILFMLGDGLVPSNAGAGYLA 363

Query: 302 RRIMRRAMCYARLLGYTEPL--MMHLLPALCTEMGSAYP-ELIQAKLLIEETLRSEDERF 358
           R ++RR++  A  +G++  +  ++ L   +  E     P E IQ  L IEE      +++
Sbjct: 364 RLMIRRSLRLAEEIGFSLSIFDLVELHRKILKEFEFEVPLETIQEMLEIEE------KKY 417

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+ RG+ L++  +   G+   ++ +   + YD+HG+P +I+  I   R   G+++   
Sbjct: 418 KLTIQRGISLVERKILRKGR---VDKEDLIEFYDSHGIPPEIVVRIAKER---GVEVEMP 471

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
                E  SR   H         +K+  S    Y  T+ + YD     K  +   KV+  
Sbjct: 472 KDFYAELASR---HMKAEKKVEEKKLKGS----YPKTEKLYYD---NPKLFEFTAKVI-- 519

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                                      V G KV  + D+T FY E+GGQ  DTG    DG
Sbjct: 520 --------------------------GVEGDKV--ILDRTAFYPESGGQASDTGYFEVDG 551

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R+++ DVQ++ +G+  H  +VE G L+    +   ID   R +   +HSATHLL ++L 
Sbjct: 552 KRIKVLDVQEE-DGVVYH--VVE-GELKVGDVVRGVIDADRRLRHMRHHSATHLLLYSLR 607

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            + G+HV Q G+       R DVTH K  +  E+  IE  VN  I  N PV    M+R +
Sbjct: 608 KLYGNHVWQAGARKERGKARLDVTHYKKPSDEEIAEIEKLVNAEIMANKPVTWEWMDRIE 667

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +RVV V     G    A CGGTH +STGEI    IV   SI
Sbjct: 668 AERRYGFRLYQGGVPPGRVIRVVRV-----GDDVQA-CGGTHCNSTGEIGFFKIVRVESI 721

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + G+ R E   G+ A  ++   +  LK  ++ L+V    +   VE  +EE+++
Sbjct: 722 QDGVIRFEFTAGESALEYVQEIERILKDASTILRVEPSKLPKTVERFFEEWKE 774


>gi|307594165|ref|YP_003900482.1| alanyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307549366|gb|ADN49431.1| alanyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 918

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 220/939 (23%), Positives = 391/939 (41%), Gaps = 183/939 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+++GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 58  SIRDVRERFLNFFERHGHVRIKRYPVVARWRTDVYLVGASIYDFQPWVTEGIVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +  ++ A +  TK
Sbjct: 118 TLSQPSIR----FTDIDKVGRSGRHLTGFEMMAHHAFNYPDKYIYWIDETVEYAHEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  L           +D E                  IT  +N W     G  G C E+ 
Sbjct: 174 ELGL-----------KDHE------------------ITYKENIWEGG--GNAGECLEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMAT 235
                                +EI  LVFM +   N   +++ +P   +DTG GLER+  
Sbjct: 203 VSG------------------LEIATLVFMHYRTVNG--KYVEMPMKIVDTGYGLERIYW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----------------------- 272
           +L  K   YD  +F   I+      G+    N ++ H                       
Sbjct: 243 LLTGKPTVYDA-VFGPFIEKLRSKLGLPKPSNEMLMHMATYFGQLDPEVTSIEKAYEYIS 301

Query: 273 --------------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                ++ DH R+ S+++ADG++P+N G GY+ R ++RR +   
Sbjct: 302 SKVGMDVNEVRNILKAQETLYILSDHGRTLSWMMADGVIPSNSGVGYLGRLLLRRMLRSM 361

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
            + G   PL   ++      +   YPE+ + +  I E +  E+ +F + L +   ++D V
Sbjct: 362 YVAGIEMPLT-EVMDMELEFLRDDYPEVYEERQTILELVDLEERKFKELLRQAPGIIDRV 420

Query: 373 LS----HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
           +       GK E+   D+   LYD+ GLP ++++++  +R                    
Sbjct: 421 IRDRERRTGKRELTVDDLIM-LYDSQGLPPEVVREVASSR-------------------- 459

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
                LGL     +  +  L  +Y                    R+V  +KP +D+ N V
Sbjct: 460 -----LGLSVVVPDDFYSRLAARY-------------------QRQVGEEKPKVDV-NPV 494

Query: 489 SSIVKAIVQQGEIVEEAVS----GQKV-------EVVFDQTPFYAEAGGQLGDTGCAIGD 537
              V+ + Q  E+  E +       KV        VV DQT FY E GGQ+ D G     
Sbjct: 495 E--VQDLPQTRELFYENMRLFQFNAKVLRVIRGKYVVLDQTAFYPEGGGQVADHGVIRHS 552

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ DVQ+   G  + H I     +  E ++   +D   R  L   H+ATH+L  ++
Sbjct: 553 RGEARVIDVQRV--GPVIVHVIEGEPPMEGE-TVEGIVDATRRLDLMRMHTATHILLQSI 609

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q G+       R DVTH K  +  E++ IE+  N ++  N PV+ R + R 
Sbjct: 610 RRVLGRHVWQAGAEKNVPFSRLDVTHYKLPSRDEIRKIEELANQMVVANYPVIIRWLGRT 669

Query: 658 DAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           DA +     +   G     ++R+V V  +D      A CGG HV STGEI ++ IV    
Sbjct: 670 DAESKFGVYIYQGGAVPGAKLRIVQVGPDDNPYDVEA-CGGMHVGSTGEIGMIKIVKVEK 728

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIH 774
           I+ G+ R    TG+ A ++    ++ +  ++  +   + +VV  V+E+  +  K++  I 
Sbjct: 729 IQEGVVRFIFTTGRHALNYTESLEDSINEVSELIGKGREDVVKGVKELLSDVSKMEGRIK 788

Query: 775 A--KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI--QSGIIMLVGI 830
           A  ++ ++ ++ +    + A +N +     E ++++   + +  ++ +  +   ++L+  
Sbjct: 789 ALTRKAIKGDIAEAMGRETA-INGVGFTYMEYENEDRNYIQEFAKEYLGARPNTVLLIIN 847

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGG 868
                   ++ ++ +   R +  +L ARL+A V G GGG
Sbjct: 848 RVSNGTEYMVYLSPETAKRVSIKELMARLNASVNGKGGG 886


>gi|124486197|ref|YP_001030813.1| alanyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|189082110|sp|A2ST90|SYA_METLZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124363738|gb|ABN07546.1| alanyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 913

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 223/896 (24%), Positives = 366/896 (40%), Gaps = 178/896 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +++ +R  +L FF+++GH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  SLTEMREAYLSFFERHGHTRINRYPVAARWRDDIYLTIASIADFQPFVTSGVCPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLDNVGR+ RH T FEM+ + +F       Y+K+R ++L    +  
Sbjct: 118 TISQPCIRL----NDLDNVGRSGRHFTCFEMMAHHAFNTDEKPIYWKDRCLELCSGFIES 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L   V+D                      +T  +N W     G  GP  E+ 
Sbjct: 174 --------LGGNVFD----------------------LTYKENPWFGG--GNAGPSVEVL 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---------QERFILPKMSIDTG 227
                   GGL           E+  LVFM   ++N          ++ + +P   +DTG
Sbjct: 202 M-------GGL-----------EVATLVFMNLSRKNSGKPPVSIDGKDYYEMPLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDI---DLFKHLIQAS-----------EQVTG--------MKYE 265
            GLER           YD    ++   ++ A+           E++ G        M   
Sbjct: 244 YGLERFTWASCGTPTAYDAVFPEMIPRILTAAGMEDRLENPEVERILGLNAKFAGLMDIR 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G  I + R                          + DH R  ++++ D I+P+N   GY+
Sbjct: 304 GEKIRDLRQQVADATNISVAKLEEIIVPMETVYALCDHTRCLAYMLGDLIVPSNVREGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR++   + L   + L   ++  + T +G A  E  Q + ++   +  E E++  
Sbjct: 364 ARLVLRRSIRMMQDLNMDDDLGDLVVSQMKT-IGLANFE--QDEDIVRHIINREVEKYDT 420

Query: 361 TLDRGLVLLDGV-LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           T++RG   +  V  +++ K+E +       LYD+HG+P+D+M  IL   G        F+
Sbjct: 421 TIERGTRTVQRVGQTYVKKNEPVPLAELITLYDSHGIPVDLMGKILKDTGAEFEIPDDFD 480

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +  S             TEK    L  KY           R +K + E RK   ++
Sbjct: 481 SQIADMHS----------ENETEKPVSPLA-KYAE---------RIAK-IPETRKSFYER 519

Query: 480 PP-IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           P  ++    V  I    V                 V D T FY E GGQ  DTG  +   
Sbjct: 520 PADMEFDATVLDIFDNYV-----------------VLDATLFYPEGGGQPSDTGMLVTKS 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ +V K  E + +H   V    L+    +   +D   R  L  +HSATH++  A  
Sbjct: 563 TMVRVDEVVK-WENVILHK--VRENTLKRGDRVKGVLDEDRRWALMRHHSATHMVLRAAK 619

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS ++ D  R D+ H   IT  ELK +E   N ++ +NLP + +I NR  
Sbjct: 620 EVLGPHVHQAGSQLSTDVARLDIRHYTHITPEELKQMETIANRLVMENLPTMVKIENRVK 679

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A      AL   G      +RVV +     G    A C GTH  STGEI  + I+    I
Sbjct: 680 AEQKFGFALYQGGVPPGKDIRVVQM-----GAEVQA-CAGTHCQSTGEIGPIKILKLEHI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RIE   G  A   +      L + A  L V   N+ G V+  + E++  +     
Sbjct: 734 QDGVERIEFAAGFAALDAMQHIQSLLNTSADTLSVQTENLPGSVDRFFTEWKDQR--KEI 791

Query: 777 RKLQLNVEDLSCHKIADVNF--MSHIISEVD--SKELKSVMDALQKKIQSGIIMLV 828
            KL+  + +L   +I  +N   +  +I ++D   KEL +V   + ++   G+ +L+
Sbjct: 792 EKLRAKIAELELSRIEGINIGGVEVVIKQIDVSRKELVTVAGKIAER--GGVTVLI 845


>gi|149002766|ref|ZP_01827692.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759060|gb|EDK66054.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 426

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 149/402 (37%), Positives = 215/402 (53%), Gaps = 20/402 (4%)

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--IRLQ 542
           T+ +SS + AIV     V  AVS     ++F +T FYAE GGQ+ D G  + +   I   
Sbjct: 24  TSQLSSKLVAIVADNAEVG-AVSEGTASLIFAETSFYAEMGGQVADYGQILDESGKIVAT 82

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +T+VQK   G  +H   V    L       L ID   R ++  NH+ATHLLH AL  ILG
Sbjct: 83  VTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILG 141

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L V T   + + A   
Sbjct: 142 NHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEALEVKTVETDIDTAKEM 201

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L  IV E  I +G RR
Sbjct: 202 GAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGLFKIVKEEGIGSGTRR 256

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHA--KRKL 779
           I A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+ R+LQ  +A  K K 
Sbjct: 257 ILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQLRQLQKENAELKEKA 316

Query: 780 QLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                        +VN   +I S+V   D+  L++  D  ++K  S +++LV    +K  
Sbjct: 317 AAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRTFADNWKQKDYSDLLVLVAAIGDKVN 376

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 377 VLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 413


>gi|241998230|ref|XP_002433758.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215495517|gb|EEC05158.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 237

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 105/235 (44%), Positives = 142/235 (60%), Gaps = 30/235 (12%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           M+  + IR  F++FF QK  H  + SSS+IP +DPTL+FTN+GM  FK IF G   P   
Sbjct: 3   MTTAAEIRQQFIDFFVQKYDHLHVRSSSVIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSD 62

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERA-------- 106
              Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FK  +        
Sbjct: 63  AGKYKRVVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDFFKANSSFSHSKEI 122

Query: 107 IQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTND 158
              AW+LLTK + L   RLY+T +        + D E  ++W  + G+  ++I+  +  D
Sbjct: 123 CSWAWELLTKVYKLQGERLYVTYFGGNEAAGLEPDLECKQIWMNL-GVPEERILPGSMKD 181

Query: 159 NFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQ 210
           NFW M ETGPCGPCSEI +D+     GG   S   + +    +EIWNLVF+Q+ +
Sbjct: 182 NFWEMGETGPCGPCSEIHYDR----IGGRNASHLVNADVPDVLEIWNLVFIQYNR 232


>gi|124028451|ref|YP_001013771.1| alanyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
 gi|205830069|sp|A2BN65|SYA_HYPBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123979145|gb|ABM81426.1| Alanyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
          Length = 921

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 245/965 (25%), Positives = 405/965 (41%), Gaps = 184/965 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61
           +V   R  F+EFF+++GHE +    ++      L  T + +V F+ ++ +G   P    +
Sbjct: 60  SVRDARRKFIEFFKRHGHEYVEPRPVVARWREDLYLTIASIVAFQPHVTSGIVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ C+R      D+D VG T  RH T FEM G+ +F       Y+KE  ++ A++  T
Sbjct: 120 VIVQPCIRL----EDIDFVGLTIGRHLTSFEMGGHHAFNYPDKTVYWKEETVRFAFEFFT 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  D +   T  +++W     G  GP  E+
Sbjct: 176 KEL--------------------------GIPEDMV---TFKESWWEGG--GNAGPSFEV 204

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                    GGL           E+  LVFMQ+   + +   +  ++ +DTG G+ER+A 
Sbjct: 205 TV-------GGL-----------ELATLVFMQYRVVDGKYEPMDIRV-VDTGYGIERIAW 245

Query: 236 VLQEKTNNYD------IDLFKHLIQASE----------------------------QVTG 261
             Q+    +       +D F+ L+  +E                            QV  
Sbjct: 246 FSQDVPTAFHAIYGELLDEFRKLLGVAEPPRELLWGAARAAGRLDPEDPESVERYYQVVA 305

Query: 262 MKYEGNNIVNHR----------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
            +  G +I   R           ++DH ++ + ++ DGI+P+N G GY+ R ++RRA+  
Sbjct: 306 ER-AGLSIREARELLGREAALYTLLDHTKTIALMLGDGIVPSNTGEGYLARLVIRRALRT 364

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            R LG    L + +           YP L+     I   +R E+ER+ KTL+RGL  +  
Sbjct: 365 LRRLGADIELAVLVERQARYWGADYYPRLLSHLDYILRVVRLEEERYSKTLERGLREVTK 424

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L    K  I   D    LYD+HG+P D++ +     G+  +D+     AL  ++  A  
Sbjct: 425 LLKRKKKLSI---DDLITLYDSHGVPPDMVAEAASKLGV-NVDVPHNFYALVAKKHGA-- 478

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                 SG   +    ++EK    +    D+   ++     R++  + P           
Sbjct: 479 ------SGAVAR---EVEEKPKLPR----DIEEWARGFPATRRLFHENP----------- 514

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                   E     +  +   V+ D T FY   GGQL DTG     G   ++  V+K  +
Sbjct: 515 -----YAREFTANLLGVRGSHVILDATLFYPTGGGQLHDTGVLRLCGEEYRVLRVEKVGD 569

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH  +++R    +       ID+  R +L  +H+A H+L  A   +LG HV Q G+ 
Sbjct: 570 -VVVH--VLDREPSCSSGEAWGRIDWDRRYRLMRHHTAVHVLLGAARRVLGDHVWQAGAE 626

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-------IASGA 664
            TP+  R D+TH +  +  E++ IE+  N  I   + V    ++R  A       I  G 
Sbjct: 627 KTPEKARLDITHYELPSREEIRKIEELANSAILARIHVDIEEIDRNTAEKLYGFRIYQG- 685

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               G     R+R+V +     G      C GTHV++T EI  + IV+   ++ G+ R E
Sbjct: 686 ----GVPMTPRLRIVRI-----GDWDVEACFGTHVANTAEIGAIKIVNVEKLQDGVVRFE 736

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            + G     +    ++KL ++AS +   +G  V RVE++ EE     L  AKR++     
Sbjct: 737 IVAGSEVARYAASLEDKLDTIASIVGGGRGEAVKRVEKLAEE-----LKEAKRQVSRLRS 791

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT- 843
            L+   +  V   +     +D  ++  + + L  +     +ML  +S+E+  S+ I V  
Sbjct: 792 FLADMLVKSVKATA---KSIDGVKVYVMTEELPDENIYREVML-KLSREEPDSITIAVIR 847

Query: 844 --EDLLDRFNA-------VDLARLSAKVLGGGG--GGGRP-HMAQSGGPNGNKADQAIAG 891
             EDLL    A       VDL R  AK L   G  GGG+P H+   G     KA +  + 
Sbjct: 848 RGEDLLMEIGAGSKAAKRVDL-RAVAKQLASKGLRGGGKPSHITLYGRGLAEKASKVASE 906

Query: 892 VASFL 896
           V   +
Sbjct: 907 VVEVI 911


>gi|213022106|ref|ZP_03336553.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 147

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/144 (60%), Positives = 111/144 (77%), Gaps = 2/144 (1%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT E  F L
Sbjct: 64  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKIS 144
            + RL++TVY+ D+EA+++W+K S
Sbjct: 124 PKERLWVTVYETDDEAYEIWEKRS 147


>gi|153214926|ref|ZP_01949709.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124114999|gb|EAY33819.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 149

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 103/138 (74%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   TT Q+
Sbjct: 8   VRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTAQR 67

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L + RL 
Sbjct: 68  CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPKERLL 127

Query: 127 ITVYDEDEEAFKLWKKIS 144
           +TVY+ D+EAF +W K S
Sbjct: 128 VTVYETDDEAFDIWNKKS 145


>gi|56807379|ref|ZP_00365361.1| COG0013: Alanyl-tRNA synthetase [Streptococcus pyogenes M49 591]
          Length = 369

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 201/395 (50%), Gaps = 39/395 (9%)

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           FKLYDT+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS         
Sbjct: 2   FKLYDTYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS--------- 51

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
                G        ++  S+F  +             T  + S +  I+   E  E    
Sbjct: 52  ----MGMQNETLAGIVEESRFEYD-------------TYSLESSLSVIIADNERTEAVSE 94

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           GQ + +VF QTPFYAE GGQ+ DTG      GD +  ++ DVQK   G  +H   V    
Sbjct: 95  GQAL-LVFAQTPFYAEMGGQVADTGRIKNDKGDTV-AEVVDVQKAPNGQPLHTVNV-LAS 151

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    +  L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH 
Sbjct: 152 LSVGTNYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHF 211

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +++ EL+ IE  VN+ I   L + T   + E A   GA AL G KY   VRVV +   
Sbjct: 212 EAVSNEELRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI--- 268

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G +S  LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK 
Sbjct: 269 --GNYSVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKE 326

Query: 745 LASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRK 778
           +A+ +K  Q  +   +V+ + +  R LQ  +A+ K
Sbjct: 327 IAATVKAPQLKDAAAKVQALSDSLRDLQKENAELK 361


>gi|322368072|ref|ZP_08042641.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552088|gb|EFW93733.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 923

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 234/969 (24%), Positives = 400/969 (41%), Gaps = 183/969 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           ++S +R  FL FF+++ HE +   P ++    +D  ++ T + +  F+ + T G+  P  
Sbjct: 61  SLSEMREVFLSFFEEHDHERIDPYPVAANRWRDD--VLLTQASIYDFQPLVTSGKTPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F    +E A         +E+
Sbjct: 119 NPLTISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFN--VREDA--------EEEY 164

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D       VY +DE      +    + AD +  IT  ++ W     G  GP  E+ + 
Sbjct: 165 AYDGE-----VYWKDETVAYCDQLFESVGAD-LDEITYIEDPWVGG--GNAGPAIEVIY- 215

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RF-ILPKMSIDTGMGL 230
                            +  E+  LVFM  EQ    E       R+  +    +DTG GL
Sbjct: 216 -----------------KGAELATLVFMSMEQDPDGEYEMKDGNRYSPMDTYIVDTGYGL 258

Query: 231 ERMATVLQEKTN---------------NYDIDLFKH---LIQASEQVTG---------MK 263
           ER   + Q                   N DI+L +    L+  + ++ G         M 
Sbjct: 259 ERWTWMSQGTPTVYEAVYPDMIAFLKENADINLSEEEEELVHRAAKLAGHMDIDEAEDMD 318

Query: 264 YEGNNIVNH------------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
              +NI                       I DH R+ +++  DGI+P+N   GY+ R ++
Sbjct: 319 AARDNIAEKVGVSTTELVELMEPLETIYAIADHSRALAYMFGDGIVPSNVATGYLARMVL 378

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RR       +G   PL   L+      +G       + +  I + +R+E E++ +TL++G
Sbjct: 379 RRTKRLCDTVGVDAPLD-ELVDMQAERLG------YENRDTIRDIVRTEVEKYRETLEQG 431

Query: 366 LVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
              +  +   H  + + +  +   +LYD+HGL  D++++I    G +      F   + E
Sbjct: 432 GRRVRRLAKRHAEEGKPIPTETLVELYDSHGLQPDMVEEIADEFGASVSVPDDFYSLVAE 491

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           +    +A                 +E+    +F   DL +  +   ED+           
Sbjct: 492 RHDGGQAFE---------------EEESEDDRFT--DLPKTERLYYEDQ----------Y 524

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                ++V  +  + E           +VV DQT FY E GGQ GD G    D   +++T
Sbjct: 525 RTDFEAVVLDVFDREE---------GYDVVLDQTMFYPEGGGQPGDHGTLSTDEKTVKVT 575

Query: 545 DVQKKAEGIFVHHA--IVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           D Q   +G+ +HH    V++G I+R +      ID Q RR+L  +H+ATH++ HA   IL
Sbjct: 576 DTQID-DGVVLHHTDDPVDKGSIVRGQ------IDAQRRRRLMRHHTATHIVVHAARQIL 628

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q G+    D  R DV H + I     K IE   N+I+ +N  V     NR +A  
Sbjct: 629 GDHIRQAGAQKGTDSSRIDVRHYERIDRETAKQIELLANEIVMENTTVQQEWPNRHEAEE 688

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L   G      +R++ V            CGGTHV  TG++  + +++   ++ G
Sbjct: 689 EFGFDLYQGGIPAGTNIRLIHV------AEDVQACGGTHVRRTGDVGCIKLLNTERVQDG 742

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---------KL 770
           + R+    G  A       ++ L + A  L VS   V    +  +EE++         K 
Sbjct: 743 VERLTFAAGDAAIEATQETEDYLGAAADTLDVSPSEVPETADRFFEEWKARGKQIEDLKE 802

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           QL  A+       E++   ++ D   +   I + D +EL++  +A+    + G I ++G 
Sbjct: 803 QLAEARASGAGGGEEI---EVGDTTAVIQRI-DTDMEELRATANAM---AEDGKIAVIGS 855

Query: 831 SKEKKASVLIVVTEDLLDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +    V+ +     ++  + V +LA       GG         AQ GGP+ +K D+A+
Sbjct: 856 GADGAQFVVAIPDGSSVNAGSVVGELASFVGGGGGGPA-----DFAQGGGPDADKLDEAL 910

Query: 890 AGVASFLKK 898
                 LK+
Sbjct: 911 ESAPDVLKQ 919


>gi|253795706|ref|YP_003038802.1| putative alanyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253740014|gb|ACT34349.1| putative alanyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 701

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 201/407 (49%), Gaps = 54/407 (13%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++ + ++  F+   Q+ GH  + SS +     D  L+F NSGM P K +FT  +  V   
Sbjct: 3   ASFAQLKNAFIGHCQRWGHLSIASSPVKAAAGDNELLFNNSGMAPLKRLFTSGDS-VDSP 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + +VQ+CVR GGKHND  N+G + RH +FFEM+G FSFG Y +  AI++ W L+ +   +
Sbjct: 62  LCSVQRCVRLGGKHNDYANIGVSRRHLSFFEMMGAFSFGSYGRRYAIEMVWSLVLR-LGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-NFWSMAETGPCGPCSEIF--F 177
             +R+ +TV   D E +  WK ++G  AD  +  T  + N W + +TG CG C+E+F  +
Sbjct: 121 RPQRVVVTVGSADSETYAAWKAVAG--ADCCVVTTYGEQNVWRVGDTGLCGACTEVFVVY 178

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D                  Y E+ N+VF+  E +       L +  +D G+G+ER   V+
Sbjct: 179 DSS----------------YWELLNVVFVSHELR-ADGCVKLARECVDVGVGVERTLAVI 221

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
                N   D++K  I A +      +  +   + R +VDHLR +SF+  +G  PA  G 
Sbjct: 222 -----NQSFDVYKE-IGADDAPLAAAFGTSFGRSLRTVVDHLRCASFVAFEGTAPAATGA 275

Query: 298 GYVLRRIMRRAMCYARL-------LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           GYVLR+++RR++    +       L   + L   ++  LC    +A     ++K+L    
Sbjct: 276 GYVLRKLIRRSVTEIMVSSPAPDALAAFKALASLVIDGLCAVDSAAAAS--KSKIL--RV 331

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           L SE + F   L RG+               L  + A  L+ THG+P
Sbjct: 332 LASEAKVFVDALTRGM------------RRALTSNGASGLHATHGVP 366


>gi|226490136|emb|CAX69310.1| Alanyl-tRNA synthetase [Schistosoma japonicum]
          Length = 297

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/186 (49%), Positives = 116/186 (62%), Gaps = 14/186 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  F +FF   GH  + SSS IP NDP+L+F N+GM  +K IF G   P       +  
Sbjct: 10  LRQQFFDFFNSRGHVYVHSSSTIPHNDPSLLFANAGMNQYKPIFQGTADPNSELGQLKRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ A  LAW+LLT  + + 
Sbjct: 70  YNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACGLAWELLTDVWKIP 129

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +          DEEA  +W  I GL  D ++     +NFW M ETGPCGPCS
Sbjct: 130 RERLYVTYFGGDSSCGLPADEEARDVWISI-GLPKDHVLPFGMKENFWEMGETGPCGPCS 188

Query: 174 EIFFDQ 179
           EI +D+
Sbjct: 189 EIHYDR 194


>gi|254167135|ref|ZP_04873988.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623991|gb|EDY36553.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 882

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 217/830 (26%), Positives = 349/830 (42%), Gaps = 177/830 (21%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V S+R +F+EFF+KNGHE +    ++      +   N+ +  F+ ++ +G   P    + 
Sbjct: 59  VESMRKSFIEFFKKNGHEEIKRYPVVARWRDDVFLVNASIYDFQPHVTSGLAPPPANPLV 118

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+R      D+D+VG+T RH T FEM+ + +F   + +  I   W   T E+    
Sbjct: 119 ISQPCIRM----VDVDSVGKTGRHLTGFEMMAHHAFN--YPDNPIY--WKDETVEY---- 166

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
                        A KL +++ G            DN               + F +   
Sbjct: 167 -------------ALKLIEELGG----------EPDN---------------VVFKEKPW 188

Query: 183 IPGGLPGSSEE----GERYIEIWNLVFMQFEQQNKQE------RFI-LPKMSIDTGMGLE 231
           I GG  G+S E    G   +EI  LVFM  ++ +  +      R+  +P   +DTG GLE
Sbjct: 189 IGGGNAGASFEVIYGG---LEIATLVFMNLKEDDNGDIELNGTRYSEMPVKVVDTGYGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------------------NNIV 270
           R     +     YD  ++  +I   E   G+                         N ++
Sbjct: 246 RFVWASKGTPTIYDA-IYPEMISMLEDRIGISRNDRKNEILRQFALLSPRIEIENENELI 304

Query: 271 NH----------------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           N                         +VD+ RS +F++ DGI+P+N   GY+ R ++RR 
Sbjct: 305 NEVLKATGASMKEYKEFILPLQKIYAVVDYTRSLAFMLTDGIVPSNVQGGYLARLLIRRT 364

Query: 309 MCYARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLL--IEETLRSEDERFGKTLDRG 365
           +   +LL     P+M+  L  +  E    + +++ + +L  + E L  E+ER+ KTL +G
Sbjct: 365 L---KLLDDLKNPVMIGELVKMHIE---RFSDIMDSSMLPIVLEELEIEEERYRKTLSKG 418

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           +   D V  H+ K+  +  D     YD+HGL  +I+ ++  + G+  +DI      L  +
Sbjct: 419 M---DIVKRHIKKNGKITTDDLILFYDSHGLLPEIVANVAESMGIR-VDIPDNFHGLVAK 474

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R  + A                   +    +   Y+L          RK+  + P +   
Sbjct: 475 RHESVA-------------------RKKKKEKKQYNL-------PPTRKLYYENPYLR-- 506

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                         E     V     EVV D T FY E GGQ  D G  I +G   ++ D
Sbjct: 507 --------------EFEANVVYSNGREVVLDATAFYPEGGGQPADRGKIICNGREYEVVD 552

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK  + + VH   ++ G +     +   +D++ R +L  NH+A H+L  A   +LG HV
Sbjct: 553 VQKFGD-VVVH--FLKDGHIEKGCKIKGILDWERRERLMRNHTAEHVLLAACRRVLGKHV 609

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q+G+       RFD+ H KPI   E+K IE+    II   +PV  + MNR +A      
Sbjct: 610 WQHGTQKDVKECRFDIAHYKPIGREEIKRIEEEAMRIITSCVPVDAKFMNRTEAEKKYGF 669

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G      +RVV +     G      CGGTHV++TGEI  L I+    I+ G+ RI
Sbjct: 670 VLYEGGIPPGKEIRVVLI-----GDFDVEACGGTHVNNTGEIGFLKILRTERIQDGVSRI 724

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKL 770
              +G  A  +   +++ L + AS L V    +   V R  + W+E RK+
Sbjct: 725 IYTSGLSALEYTQEREDILNNSASVLGVQPEKLPLAVKRFFDEWKEQRKI 774


>gi|330799188|ref|XP_003287629.1| hypothetical protein DICPUDRAFT_151768 [Dictyostelium purpureum]
 gi|325082356|gb|EGC35840.1| hypothetical protein DICPUDRAFT_151768 [Dictyostelium purpureum]
          Length = 208

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 110/146 (75%), Gaps = 2/146 (1%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FT  E+  Y+ VTT QKCVRA
Sbjct: 4   FLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTALEESKYKLVTTSQKCVRA 63

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRRLYIT 128
           GGKHNDL N+G T RHHTFFEML NFSFGGY  FK  +IQ AW+LLTK+F L + RL I+
Sbjct: 64  GGKHNDLKNIGYTARHHTFFEMLSNFSFGGYNHFKRDSIQHAWNLLTKDFGLPKERLAIS 123

Query: 129 VYDEDEEAFKLWKKISGLSADKIIRI 154
           V + DEE+  +W+   GLS DKI+ +
Sbjct: 124 VLEGDEESASIWRDQIGLSNDKIMDL 149



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%), Gaps = 1/37 (2%)

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQA-SEQV 259
           +DTG+GLERMATVLQ KT NYDIDLF++LI +  EQV
Sbjct: 154 VDTGLGLERMATVLQGKTTNYDIDLFQNLINSFKEQV 190


>gi|171185364|ref|YP_001794283.1| alanyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|205830275|sp|B1YDH4|SYA_THENV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170934576|gb|ACB39837.1| alanyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 892

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 199/823 (24%), Positives = 328/823 (39%), Gaps = 165/823 (20%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + +++ +R  FL FF++N H  +    ++      +    + +  F+   T G   P   
Sbjct: 54  VESLADLRERFLRFFERNSHVRIRRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   Q A++  
Sbjct: 114 PLAISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTQYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+E                           G+  D+I   T  ++ W     G  G C E
Sbjct: 170 TREL--------------------------GIPPDEI---TFKESMWEGG--GNAGECFE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERM 233
           +                    R +E+  LVFM +E   K  R++ LP   +DTG GLER+
Sbjct: 199 VLI------------------RGLEVATLVFMHYE--VKDGRYVELPLKIVDTGYGLERI 238

Query: 234 ATVLQEKTNNYDIDLFKHLIQASE------------------------QVTGMKYEGNNI 269
             +L+     YD     +L +A +                        +V G++ +  +I
Sbjct: 239 YWLLKGTPTVYDAVFGPYLAKARQRLGVPEPPAEVMGKASVYFGQMDPEVIGLE-KAYDI 297

Query: 270 VNHR-------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
           +  +                   V+ DH R+ S++IADG++P+N G GY+ R ++RR + 
Sbjct: 298 IAEKIGVDPKWLREVVRPQEALYVLADHSRTVSWMIADGVIPSNTGAGYLARLLIRRILK 357

Query: 311 YARLLGYTEPLM----MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
             RL G   PL+    MHL      E+   YPE+ +A+ LI E +  E+ R+ + L    
Sbjct: 358 NLRLAGVDAPLVELFDMHL-----AELKREYPEVWEARGLILELVDMEERRYREVLKSAP 412

Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG--LAGIDIISFNQAL 422
             +   L    +     L+ D    LYD+ G+P ++  ++  + G  +   D      A 
Sbjct: 413 AAVKKALEEARRRGRAGLDADDLVALYDSQGIPPEVAAEVAKSLGTEVKVPDDFYAKLAA 472

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
              +   +  S  +  G                     DL R  +   ED  +   K   
Sbjct: 473 RHVKREKKPESSPVEMGKVA------------------DLPRTRELFYEDSYMRSFK--- 511

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 + +++ I            G+ V  V DQT FY E GGQ  D G     G   +
Sbjct: 512 ------ARVLRVI-----------DGRYV--VLDQTAFYPEGGGQPADRGVLKFQGGEAK 552

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + DVQ+    +                 +V  +D++ R  L   H+ TH+L  ++  +LG
Sbjct: 553 VVDVQRVGHVVVHVVEGQPPP---EGAEVVGEVDWERRYSLMKMHTGTHVLIQSIRRVLG 609

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SH+ Q G+       R DVTH +  T+ E+  IE+  N  +  +LPV  +IM R +A A 
Sbjct: 610 SHIWQAGAQKDIPSSRIDVTHHRLPTAEEVARIEELANRAVQADLPVYAKIMPRNEAEAK 669

Query: 663 GAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
               L   G      +RV+ +   D   +    CGGTH+ STGEI L+ I     I  G+
Sbjct: 670 YGFVLYQGGVVPAREIRVLQIG-PDEQPYDVQACGGTHLRSTGEIGLIKIQKVERIADGV 728

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            R    TG  A +++   + +    AS    S+  +V  V  +
Sbjct: 729 VRFVFTTGMHALAYVQELERRAAEAASIAGGSRDELVEAVRRL 771


>gi|307353744|ref|YP_003894795.1| alanyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307156977|gb|ADN36357.1| alanyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 912

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 233/926 (25%), Positives = 382/926 (41%), Gaps = 189/926 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF+K GH+ +    +       +  T + +  F+   T G   P    +
Sbjct: 58  SLDEMREAYLSFFEKQGHQRISRYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+R ++L  DL  +
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTTFEMMAHHAFNTDKNEIYWKDRTVELC-DLFIE 172

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                     I G   D    +T  ++ W     G  GP  E+ 
Sbjct: 173 -------------------------SIGGNLED----VTYKEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMS-----IDTG 227
                   GGL           E+  LVFM   +       I    +P        +DTG
Sbjct: 202 I-------GGL-----------EVATLVFMSLGKMANGRTPIELEGVPYYPMDLRIVDTG 243

Query: 228 MGLERMA-----------TVLQEKTNNYDIDL-FKHLIQASE--QVTGM--KY------E 265
            GLER              V  E  N+  I    ++L+Q+SE  ++  M  KY       
Sbjct: 244 YGLERFVWASKGSPTIYDAVFPEMVNDLMISAGLENLLQSSELAKILAMNAKYAGQMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G+N++  R                          I DH R  ++++ D I+P+N   GY+
Sbjct: 304 GSNLIKMRKEVAKTIGVGFEKLQALMDPVERVYAITDHTRCLAYMLGDCIVPSNAQEGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL-LIEETLRSEDERFG 359
            R ++RR +     +G   PL       +  +M    P+  + K  +I E + +E  ++ 
Sbjct: 364 ARLVIRRTLRMMNEIGLETPL----YELIEKQMKIIGPDSFEQKPSVINEIIENEVVKYE 419

Query: 360 KTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS- 417
           +T++RG  ++  +  S+ GK E +       LYD+HG+P +I++D + A     +D+   
Sbjct: 420 QTMERGARIVRKIAGSYRGKKEPVPLKELITLYDSHGIPPEIVRD-IAAEESVEVDLPDD 478

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLK---EKYGATQFIGYDLLRGSKFMKEDRK 474
           F   + +  S           G  E  + +L+   E    T+ + Y+ +  ++F   D  
Sbjct: 479 FYSVVADMHSEN-------DEGVKEDPYAALRKRIEGLPPTKRLYYEQVADTEF---DAM 528

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           V      ID  +                          V+ DQT FY E GGQ  D G  
Sbjct: 529 V------IDAFDNY------------------------VILDQTLFYPEGGGQPADIGRL 558

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +   +++    K  E + +H   +E G +R  + +   ID   R  +  +HSATH+L 
Sbjct: 559 LSENAMVKVVHTFKLGE-VILHR--IEGGDIRRGVQVKGVIDENFRLTMMRHHSATHVLL 615

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
           HA   +LG H+ Q G+    +  R D+ H K IT  EL+ IE   N II +N  +V    
Sbjct: 616 HAAKHVLGPHIHQAGAQKGFESSRIDLRHFKHITPEELQKIEIEANRIILENQKIVIEWE 675

Query: 655 NREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +R  A       L   G      +R+V V    G V +   C GTH  STGEI  L I+ 
Sbjct: 676 DRTTAEQKYGFDLYQGGVPPGKMIRIVKV---SGDVQA---CAGTHCRSTGEIGCLKIIR 729

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KL 770
              ++ GI R+E   G  A +++   +  L S    L V + N+   V+  + E++  K 
Sbjct: 730 VEHVQDGIERVEFAAGLSAIAYMEKMEGLLDSSCQTLSVQRENLPSSVDRFFSEWKDQKK 789

Query: 771 QLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++    ++L +L +E LS  +I  ++   H ++    KEL S+     K    G + LV 
Sbjct: 790 EIEKLGKELGELRLEGLSSEEIGGISVAVHEVN-ASPKELVSIA---TKFANEGGVGLVA 845

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL 855
             +++    + VV     +R NA DL
Sbjct: 846 GGEDR----IHVVAASGTERINAADL 867


>gi|13186176|emb|CAC33486.1| alanyl-tRNA synthetase [Legionella pneumophila]
          Length = 147

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 102/138 (73%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ   T 
Sbjct: 4   SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRAATA 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +   R
Sbjct: 64  QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAER 123

Query: 125 LYITVYDEDEEAFKLWKK 142
           L++TVY ED EA  +W K
Sbjct: 124 LWVTVYKEDLEAEDIWLK 141


>gi|254167730|ref|ZP_04874580.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289597120|ref|YP_003483816.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623258|gb|EDY35823.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534907|gb|ADD09254.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 882

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 215/830 (25%), Positives = 348/830 (41%), Gaps = 177/830 (21%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V S+R +F+EFF++NGHE +    ++      +   N+ +  F+ ++ +G   P    + 
Sbjct: 59  VESMRRSFIEFFKRNGHEEIKRYPVVARWRDDVFLVNASIYDFQPHVTSGLAPPPANPLV 118

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+R      D+D+VG+T RH T FEM+ + +F   + +  I   W   T E+    
Sbjct: 119 ISQPCIRM----VDVDSVGKTGRHLTGFEMMAHHAFN--YPDNPIY--WKDETVEY---- 166

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
                        A KL +++ G            DN               + F +   
Sbjct: 167 -------------ALKLIEELGG----------EPDN---------------VVFKEKPW 188

Query: 183 IPGGLPGSSEE----GERYIEIWNLVFMQFEQQNKQE------RFI-LPKMSIDTGMGLE 231
           I GG  G+S E    G   +E+  LVFM  ++ +  +      R+  +P   +DTG GLE
Sbjct: 189 IGGGNAGASFEVIYGG---LELATLVFMNLKEDDNGDIELNGTRYSEMPVKVVDTGYGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------------------NNIV 270
           R     +     YD  ++  +I   E   G+                         N ++
Sbjct: 246 RFVWASKGTPTIYDA-IYPEMISMLEDRIGISRNDRKNEILRQFALLSPRIEIENENELI 304

Query: 271 NH----------------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           N                         +VD+ RS +F++ DGI+P+N   GY+ R ++RR 
Sbjct: 305 NEVLKATRASMKEYKEFILPLQKIYAVVDYTRSLAFMLTDGIVPSNVQAGYLARLLIRRT 364

Query: 309 MCYARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLL--IEETLRSEDERFGKTLDRG 365
           +   +LL     P+M+  L  +  E    + +++ + +L  + E L  E+ER+ KTL +G
Sbjct: 365 L---KLLDDLKNPVMIGELVKMHIE---RFSDIMDSSMLSIVLEELEIEEERYRKTLSKG 418

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           +   D V  H+ K+  +  D     YD+HGL  +I+ ++  + G+  +DI      L  +
Sbjct: 419 M---DIVKRHIKKNGKITTDDLILFYDSHGLLPEIVANVAESMGIR-VDIPDNFHGLVAK 474

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R  + A                   +    +   Y+L          RK+  + P +   
Sbjct: 475 RHESVA-------------------RKKKKEKKQYNL-------PPTRKLYYENPYLR-- 506

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                         E     V     EVV D T FY E GGQ  D G  I DG   ++ D
Sbjct: 507 --------------EFEANVVYSNGREVVLDATAFYPEGGGQPADRGKIICDGREYEVVD 552

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK  + + VH   ++ G +     +   +D++ R +L  NH+A H+L  A   +LG HV
Sbjct: 553 VQKFGD-VVVH--FLKDGHIEKGCKIKGILDWERRERLMRNHTAEHVLLAACRRVLGKHV 609

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q+G+       RFD+ H KPI   E+K IE+    II   +PV  + MNR +A      
Sbjct: 610 WQHGTQKDVKECRFDIAHYKPIGREEIKRIEEEGMRIITSCVPVDAKFMNRTEAEKKHGF 669

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G      +RVV +     G      CGGTHV++TGEI  L I+    I+ G+ RI
Sbjct: 670 VLYEGGIPPGKEIRVVRI-----GDFDVEACGGTHVNNTGEIGFLKILRTERIQDGVSRI 724

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKL 770
              +G  A  +   +++ L + AS L V    +     R  + W+E RK+
Sbjct: 725 IYTSGLSALEYTQEREDILNNSASVLGVQPEKLPLAAKRFFDEWKEQRKI 774


>gi|170291158|ref|YP_001737974.1| alanyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|205830075|sp|B1L762|SYA_KORCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170175238|gb|ACB08291.1| alanyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 895

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 210/846 (24%), Positives = 354/846 (41%), Gaps = 173/846 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF++ GH  +    +I      L  T++ +V F+   T G   P    +
Sbjct: 54  SLEEVREDFLRFFERRGHTRINRYPVIARWREDLFLTSASIVDFQPFITAGIVPPPANPL 113

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           T  Q C+R      D+D VG T  RH + FEM+ + +F       Y+ +R ++L  +  T
Sbjct: 114 TISQPCIRL----KDIDKVGPTMGRHLSIFEMMAHHAFNTKDKFVYWIDRTVELFHEYAT 169

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                      + G+  ++I   T  +  W     G  GP    
Sbjct: 170 S--------------------------VLGIPEEEI---TYKEGIWEGG--GNAGP---- 194

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E I GGL           EI  LVFMQ+  +N      +    +DTG GLER+  
Sbjct: 195 ---DLEPIAGGL-----------EIATLVFMQYRIENGS-YVPMDTRVVDTGYGLERITW 239

Query: 236 VLQEKTNNY--------------------DIDLFKHLIQASEQVTGMKYEGNNIVNHR-- 273
            L+     +                    D+ L     + S  +  ++ +G +I + R  
Sbjct: 240 FLRGDPTGFHAVYGALLHEFMDKLGVSEPDLSLLSEYSKVSSILRELE-KGRSISSLRRE 298

Query: 274 -----------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                                   ++DH ++ SF+IADG++P+N   GY+ R ++RR++ 
Sbjct: 299 AALLIGVSEEELEEKIAPLEAVFSLLDHTKALSFMIADGLVPSNVNEGYLGRLLIRRSLR 358

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
               LG   PL    +          +PEL +A   I E +  E+ER+ + ++RG  ++ 
Sbjct: 359 ILNQLGSEVPLSELAVRQAEYWSSKGFPELREAIDRIAEIVSIEEERYKEAVERGAKIIS 418

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG-IDIISFNQALEEQRSRA 429
            ++   G+   L+ D    LYD+HGL  DI+      R +AG +D+      +   R  A
Sbjct: 419 DLMREKGR---LSVDDLIMLYDSHGLSPDIV------RRIAGDVDVPDNFFEMIAARHEA 469

Query: 430 RAHSLGLGSGTTEKIWFSLKE--KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           R            K++  + E  +Y  T+ + Y   +    ++ + +VL           
Sbjct: 470 RKPE-------PPKVFERMDELRRYPPTKLLYY---QDPYLLEFEARVLGY--------- 510

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
                             V G+   ++ D+T FY E GGQ  D G     GI +++   +
Sbjct: 511 ------------------VDGK---MILDRTAFYPEGGGQPSDIGSFEWRGIEVKVVGAE 549

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           K   G ++ H++   G L     +V   +D   R     +H+ATH++  A   +LGSHV 
Sbjct: 550 K--HGGWILHSV--EGDLPPAGEVVRARVDSWRRLNRMRHHTATHVILEAARRVLGSHVW 605

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    +  R D+TH K I+  EL+ IE   N+++ +N+PV T  + R DA       
Sbjct: 606 QWGAQKGDEESRLDITHYKGISQEELRRIEMLANEVVMRNIPVRTLWLVRTDAERRYGFT 665

Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L   G   +  +RVV +E    G ++ A CGGTHV  TGEI  + I     I+ G+ R+E
Sbjct: 666 LYQGGVVPDPVLRVVEIE----GFNAQA-CGGTHVLRTGEIGPIKIWRARKIQDGVIRLE 720

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
              G  A   ++   +K+K +A    +S+  +      + EE ++L+    +R++    E
Sbjct: 721 FSAGVPAVKRIIDYHQKIKDIAQSAGISEEEIDTFFRGMMEELKELR--KERRRMMKEAE 778

Query: 785 DLSCHK 790
           + S  +
Sbjct: 779 ERSIER 784


>gi|18314158|ref|NP_560825.1| alanyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|22096201|sp|Q8ZSV6|SYA_PYRAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18161747|gb|AAL65007.1| alanyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 892

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 219/900 (24%), Positives = 369/900 (41%), Gaps = 186/900 (20%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + +++ +R  FL FF++ GH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  IDSLTELRERFLRFFERRGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   + A++  
Sbjct: 114 PLVISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKFIYWIDETAEYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           TKE                           G+  ++I   T  ++ W     G  G C E
Sbjct: 170 TKEL--------------------------GIPPEEI---TFKESIWEGG--GNAGECFE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERM 233
           +                    R +E+  LVFM +E   K+ +++ LP   +DTG GLER+
Sbjct: 199 VLV------------------RGLEVATLVFMHYEV--KEGKYVELPLKIVDTGYGLERI 238

Query: 234 ATVLQEKTNNYDIDLFKHLIQA------------------------SEQVTGMKYEGNNI 269
             +++     YD     +L +A                          +V G++ +  +I
Sbjct: 239 YWLIRGTPTIYDAVFGPYLDKARRSLGFPEPPSELMGKASVYFGQMDPEVIGLE-KAYDI 297

Query: 270 VNHR-------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
           +  +                   V+ DH R+ S++IADG++P+N G GY+ R ++RR + 
Sbjct: 298 IAEKIGVDPKWLREVFKPQEALYVLADHSRTVSWMIADGVIPSNSGAGYLARLLLRRILK 357

Query: 311 YARLLGYTEPLM----MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
             +L+G   PL+    MHL      E+ + YPE+ +A+ LI E +  E+ ++ + L    
Sbjct: 358 NLKLVGVETPLVELFDMHL-----KELKADYPEVWEARNLILELVDIEERKYREILKSA- 411

Query: 367 VLLDGVLSHLGKDEILNGDVAF------KLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
               GV+    ++    G   F       LYD+ GLP +I+ +   + G+       F  
Sbjct: 412 ---PGVVKKAYEEARRRGRAGFDAEDLVSLYDSFGLPPEIVAETAKSLGVEVKIPDDFYS 468

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            L  + ++             EK    + +          DL R  +   ED  +   K 
Sbjct: 469 RLAARHAKREKQP--------EKTLVEMAKI--------ADLPRTRELFYEDPYMKSFK- 511

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   + +++ I            G+ V  V DQT FYAE GGQ  D G     G  
Sbjct: 512 --------AKVLRVI-----------DGKYV--VLDQTAFYAEGGGQPADIGILKHGGGA 550

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ DVQ+    + VH  +VE         +V  ID+  R  L   H+ TH+L  ++  +
Sbjct: 551 AKVVDVQRVGH-VIVH--VVEGEAPPEGSEVVGEIDWDRRYALMKMHTGTHVLIQSIRRV 607

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H+ Q G+       R DVTH K  T+ E+  IE   N ++  N+PV  +I+ R +A 
Sbjct: 608 LGPHIWQAGAQKDIPASRIDVTHFKLPTAEEVAEIERLANSVVQANMPVHVKILPRNEAE 667

Query: 661 ASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A     L   G      +RVV +   D   +    CGGTH+ STGEI L+ I     I  
Sbjct: 668 AKYGFILYQGGVVPAREIRVVQIG-PDEAPYDVQACGGTHLKSTGEIGLIKIQKVERIAD 726

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQ--- 771
           G+ R    TG  A  ++   + ++   AS    ++ N+V  V  +     E  RK Q   
Sbjct: 727 GVVRFIFTTGLHALKYVQEIERQVAEAASLAGGNRDNLVDSVRRLLQRAEEAERKAQRYT 786

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL-KSVMDALQKKIQSGIIMLVG 829
            L  A+    L  E +  +++A        + E++ +EL K V      + +  ++++VG
Sbjct: 787 ELYAAEFVKNLKAEPVGKYRLA--------VVELEDEELAKKVAQIATGRDKELVLLVVG 838


>gi|239943365|ref|ZP_04695302.1| putative alanyl-tRNA synthetase [Streptomyces roseosporus NRRL
           15998]
 gi|239989818|ref|ZP_04710482.1| putative alanyl-tRNA synthetase [Streptomyces roseosporus NRRL
           11379]
          Length = 388

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/408 (33%), Positives = 203/408 (49%), Gaps = 44/408 (10%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
           TF+E++++ GH  +  S+L+P     ++FT SGM P      G+  P+ + +  VQ+C+R
Sbjct: 9   TFVEYYEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGKRLVNVQRCLR 68

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
                 DLD VG    H T FEMLG +S G Y    ++   + LLT+   +D   L+ T 
Sbjct: 69  T----TDLDEVGDAT-HLTVFEMLGTWSLGDYGGPLSLDWGYGLLTEGLGIDPGLLHATA 123

Query: 130 YDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +  D+       + +LW+ +        + +T  DN+WS    GPCGP SEIFF  G+  
Sbjct: 124 FAGDDRTGPDTASAELWQGLG-----VPVELTVEDNWWSNGPVGPCGPDSEIFFWSGDGP 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   P   +   R++E+WN V M   +        LP+ ++DTG+GLER+A +LQ K + 
Sbjct: 179 PRSTPIRDD---RWVEVWNHVTMTHRRHGDGSLVPLPQRNVDTGLGLERLAALLQGKQSV 235

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +  D+F         +  ++         R+I DHLRS   L+ DG+ P+N GRGYVLRR
Sbjct: 236 FACDVFAPWRHLVPPLWSLEEPAC-----RLISDHLRSVVVLLGDGVRPSNTGRGYVLRR 290

Query: 304 IMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           ++RR +        +R LG   E L+ H L     +   A P  +   LL EE       
Sbjct: 291 LVRRVLTVLWREDASRTLGDLPEDLVHHTLDHFHQD---ARPADVLRHLLDEE------H 341

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           RFG+ L RG      VL+       L  +    L+DTHGLP D++  +
Sbjct: 342 RFGRLLTRG----RSVLARPRFRGPLAEEDFHYLHDTHGLPRDLVTSL 385


>gi|289762725|ref|ZP_06522103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis GM 1503]
 gi|289710231|gb|EFD74247.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis GM 1503]
          Length = 494

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 226/457 (49%), Gaps = 37/457 (8%)

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           GAT+F G+D LR S+       V  ++ P+ + +GV+               A  GQ+VE
Sbjct: 51  GATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVE 95

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G     
Sbjct: 96  LVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEG 155

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +++  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T
Sbjct: 156 DTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLT 215

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +   +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV    E GG 
Sbjct: 216 DDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGP 271

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS 
Sbjct: 272 FSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASS 331

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS- 802
           LKV    V  RV  + E  R  +    + ++               +I +V  ++  +S 
Sbjct: 332 LKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSG 391

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLAR 857
            + + +L+S++  ++ K+ S   ++  I++ +  +V   V      +DL  R N  DL +
Sbjct: 392 GMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVK 449

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             A  +  G GGG+  +AQ  G N    D A+  V S
Sbjct: 450 QLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 485


>gi|255513796|gb|EET90061.1| alanyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 916

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 199/822 (24%), Positives = 332/822 (40%), Gaps = 169/822 (20%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAVTTVQ 65
           +TF +FF+K GH +     ++      L FT + +  F+ I  G+   E P Y  +   Q
Sbjct: 102 STFADFFKKRGHSMAERYPVVSRWRQDLYFTIASIQDFQRIENGRVNFEYP-YNPLIVPQ 160

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG----GYFKERAIQLAWDLLTKEFDLD 121
            C+R     ND+ NVG T RH T F M G  +F     GY++   I+L +D LTK   + 
Sbjct: 161 MCLR----FNDVPNVGVTGRHFTSFMMAGQLAFNYPKEGYWRNETIRLNYDFLTKVLKVK 216

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           +  L                             T  ++ W+M +    GPC E F +   
Sbjct: 217 KEAL-----------------------------TYTEDIWAMGDFSEFGPCIESFANG-- 245

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                           +E+ N VF +FE  + +   +  K+ +D G G ER+        
Sbjct: 246 ----------------LELVNSVFTEFEYSSGKVSELKGKV-VDVGWGFERLMWYASGAQ 288

Query: 242 NNYD-------------------IDLFKHL------IQASEQ------------VTGM-K 263
             YD                    +L+  +      I  SE+              G+ +
Sbjct: 289 TAYDPVFANELKYLYDSTGVEPNAELYSRMAGKLAEIDLSEENRRQETELEVARAAGISE 348

Query: 264 YEGNNIV--NHRV--IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE 319
            E N I+  N  +  I DH R+  F I+DG LP+N G GY LR ++RR   ++       
Sbjct: 349 REYNEIILPNQALYAIADHARTFLFAISDGALPSNVGGGYNLRILLRRIFDFSERYKLKF 408

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
             M HL+    +++ S Y ++ ++     + +  E  R+  T  +   ++  +L      
Sbjct: 409 D-MQHLMEITASDLKSTYGDMAESIPEAAKIIELERSRYSATRAQARRIVGSLLEKSHGT 467

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISFNQALE----EQRSRARAHSL 434
             ++      +Y+++G+  + +  +   +G+   I   ++++ L+    E+  + +   +
Sbjct: 468 SAIDAKTLNTMYESNGITPEFISAVAAEKGIKIEIPETAYSKILKGDFVEKEKKQKKLDI 527

Query: 435 GL-GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
           G  G   TEK+++S  EK  AT                                   +VK
Sbjct: 528 GTEGIKPTEKLFYSFAEKAEAT-----------------------------------VVK 552

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A              +   VV D+TPFYAE+GGQ  D G   G    L++TDVQ    G+
Sbjct: 553 A--------------ENGFVVLDRTPFYAESGGQEADHGRIGG----LEVTDVQNIG-GV 593

Query: 554 FVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
            VH   V+   L ++ S V   +D + R +L  +H+ATHL+  A   +LG H  Q G+  
Sbjct: 594 IVHE--VKGSPLPSKGSKVHCEVDRERRLRLMAHHTATHLVSAAARAVLGKHAWQEGAKK 651

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTK 671
           +      D+ H + ++  ++K IE   N  I   + V    M R++A  S G +   G  
Sbjct: 652 SATKAHIDIAHYEKLSDRQIKEIESTANGFILHGIKVTMHEMKRKEAEESFGFSIYQGHG 711

Query: 672 YNDRV-RVVSVEYEDGGVHSSALCGGTHV-SSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               V R+V +   DG +  +  CGG H+     EI L+ I     I  GI RIE + G 
Sbjct: 712 MPSGVLRIVEIRDLDGKLIDAEACGGLHLMGRESEIGLIKITGSYRIHDGIDRIEYVAGI 771

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            A  ++ G +  +  +A         +  R++    E  K +
Sbjct: 772 AAEDYIKGMEASIGEIAGTFGADAAGITPRIKAKLAELEKYR 813


>gi|91774109|ref|YP_566801.1| alanyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121689045|sp|Q12U25|SYA_METBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91713124|gb|ABE53051.1| Alanyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 923

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 228/982 (23%), Positives = 404/982 (41%), Gaps = 208/982 (21%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           +  +R  +L FF++ GH  +    +I      +  T + +  F+   T GQ  P    +T
Sbjct: 60  LPDMREFYLNFFEEQGHTRIERYPVIARWRDDIYLTIASIADFQPFVTSGQVPPPANPLT 119

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q C+R     +DLD VG++ RH T FEM+ + +F       Y+KE  ++L   LL   
Sbjct: 120 ISQPCIRL----SDLDAVGKSGRHLTTFEMMAHHAFNTKNEEIYWKEHTLELCDGLL--- 172

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                     + L AD +  +T  +  W  A  G  G C E+  
Sbjct: 173 --------------------------NSLGADPMA-VTYKEEPW--AGGGNAGACVEVLI 203

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ------------NKQERFILPKMSID 225
                  GGL           E+  LVFM  ++             +K E +I     +D
Sbjct: 204 -------GGL-----------EVATLVFMNLKKDKNGDIDIKGDMYSKMENYI-----VD 240

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------------- 268
           TG GLER+    +     YD  +F  ++     + G+++E  N                 
Sbjct: 241 TGYGLERLVWASKGSPTIYDA-IFPSIVNELMGLAGIEHELENNEYSHILSQNARLAGLM 299

Query: 269 --------------------------------IVNHRVIVDHLRSSSFLIADGILPANEG 296
                                           + N   I DH R  +F+I DGI+P+N  
Sbjct: 300 DISEKANLLELRKQVAASIGITADKLSSIMEPVENVYAIADHTRCLTFMIGDGIIPSNVK 359

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPL----MMHL--LPALCTEMGSAYPELIQAKLLIEET 350
            GY+ R ++RR +   + LG   P+     MH+  LP         YPE  +   +I++ 
Sbjct: 360 AGYLARLVIRRTLRMMKDLGIMIPISEIIQMHINNLPE--------YPEFQKRFDVIKDI 411

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG--LPLDIMQDILCAR 408
           L  E+ +F +TL+RG  +++    H               Y   G  +PL+ + D+  + 
Sbjct: 412 LEHEERKFAETLERGRRMMEKSARH---------------YKESGEKMPLETIIDMYDSH 456

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+              + S+A A  +G+     +  +  + +K+  ++            
Sbjct: 457 GIP------------PEISKAVASDVGVEVDLPDNFYSLVADKHSQSE------------ 492

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE-EAVSGQKVE--VVFDQTPFYAEAG 525
            KE++ V    P  D    +    +    +   ++ +AV  +  +  +V D T  Y E G
Sbjct: 493 EKEEKVV----PFADKIARLPKTKRLFYDEPNRMDFDAVVLEVFDNHIVLDNTLMYPEGG 548

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ  D G    + + L++ D Q   +G+ VH  + I +   +R    +V  ++ + R   
Sbjct: 549 GQPADHGTLTVEDVVLKVVDTQM-YDGVVVHTINEIEDELHIRKGDMVVGRVNEKRRMAH 607

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH+++ A   +LGSH+ Q G+    D  R D++H K IT  E   IE   N  +
Sbjct: 608 ARHHTATHIINDAAREVLGSHIWQTGAQKFADRARLDISHYKRITQEEANQIEIIANHTV 667

Query: 644 AQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +N  +++  M+R +A       L   G      +RV+ V       +    C GTH ++
Sbjct: 668 MKNKRIISDWMDRTEAEQKYGFRLYQGGVPPGKMIRVLQVG------NDIEACAGTHCTN 721

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG +  + I+    I+ G+ R+E   G+ A   +   +  ++  +  L+VS   +   +E
Sbjct: 722 TGLVGPIKILKTERIQDGVERLEYAAGEAAIIAMQDIETLVRDSSETLRVSAEQLPSTIE 781

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDAL 816
             ++E+++L+  + K K +L    +S   +   DVN    ++  I   DS+EL      L
Sbjct: 782 RFFDEWKELKKENNKLKEELAHSRVSQLVNDAEDVNGIRIITKAIPHADSEELTKTAGEL 841

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +  +S ++ ++ IS+     ++    +D + R   V         + GGGGGGRP+MA+
Sbjct: 842 TQ--ESNVVAIL-ISEMDGVKIVATAGDDAVKRGVNVGAIVKEMSTMVGGGGGGRPNMAR 898

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG + +  D A++     LK+
Sbjct: 899 GGGTDPSGMDNALSRSVELLKE 920


>gi|145640918|ref|ZP_01796500.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274432|gb|EDK14296.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 150

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSA 148
            L + +L++TVY+ D+EA+ +W K S  S 
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKRSRCSC 150


>gi|291446832|ref|ZP_06586222.1| alanyl tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291349779|gb|EFE76683.1| alanyl tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 408

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 137/408 (33%), Positives = 204/408 (50%), Gaps = 44/408 (10%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
           TF+E++++ GH  +  S+L+P     ++FT SGM P      G+  P+ + +  VQ+C+R
Sbjct: 29  TFVEYYEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGKRLVNVQRCLR 88

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
                 DLD VG    H T FEMLG +S G Y    ++   + LLT+   +D   L+ T 
Sbjct: 89  T----TDLDEVGDAT-HLTVFEMLGTWSLGDYGGPLSLDWGYGLLTEGLGIDPGLLHATA 143

Query: 130 YDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +  D+       + +LW+   GL     + +T  DN+WS    GPCGP SEIFF  G+  
Sbjct: 144 FAGDDRTGPDTASAELWQ---GLGVP--VELTVEDNWWSNGPVGPCGPDSEIFFWSGDGP 198

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P   P   +   R++E+WN V M   +        LP+ ++DTG+GLER+A +LQ K + 
Sbjct: 199 PRSTPIRDD---RWVEVWNHVTMTHRRHGDGSLVPLPQRNVDTGLGLERLAALLQGKQSV 255

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +  D+F         +  ++         R+I DHLRS   L+ DG+ P+N GRGYVLRR
Sbjct: 256 FACDVFAPWRHLVPPLWSLEEPAC-----RLISDHLRSVVVLLGDGVRPSNTGRGYVLRR 310

Query: 304 IMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           ++RR +        +R LG   E L+ H L     +   A P  +   LL EE       
Sbjct: 311 LVRRVLTVLWREDASRTLGDLPEDLVHHTLDHFHQD---ARPADVLRHLLDEE------H 361

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           RFG+ L RG      VL+       L  +    L+DTHGLP D++  +
Sbjct: 362 RFGRLLTRG----RSVLARPRFRGPLAEEDFHYLHDTHGLPRDLVTSL 405


>gi|222445824|ref|ZP_03608339.1| hypothetical protein METSMIALI_01468 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869576|ref|ZP_05975048.2| alanine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|222435389|gb|EEE42554.1| hypothetical protein METSMIALI_01468 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861589|gb|EFC93887.1| alanine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 897

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 230/951 (24%), Positives = 391/951 (41%), Gaps = 184/951 (19%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           I+  F EF +K GH  +    ++     D   +   S       + +G  KP    +   
Sbjct: 56  IQQVFREFLEKEGHTPIKRYPILAKRWRDDVFLVGASIFCFQPWVTSGMVKPPANPLEIE 115

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q  VR     ND+DNVGRT RH T F M  +          Y+++  I+L  +       
Sbjct: 116 QPSVRL----NDVDNVGRTGRHMTCFTMGSHTVINTEENFIYWEDETIRLCHEFF----- 166

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                                 K  G++ ++I  I +   +WS    G  GPC E+    
Sbjct: 167 ----------------------KYIGINTEEICFIKS---WWSGG--GNEGPCYEV---- 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             C+ G            +E+  LVF+Q++  +  E+  +P   +DTG GLER+A + Q 
Sbjct: 196 --CVRG------------VELATLVFIQYKTLDNGEKEEIPIKVVDTGYGLERIAWISQG 241

Query: 240 KTNNYD------IDLFKHL---------IQASEQVTGM---------KYEGNNIVNH--- 272
               YD      +D  K L         +  + Q+ GM         K     + N    
Sbjct: 242 TPTAYDACFAPVVDKLKELTDVKVNTDILARNAQIAGMMDIEDIGDIKELRQQVANSLGI 301

Query: 273 ---------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                           +I DH R  +F++ADGI+P+N   GY+ R ++RR + + + L  
Sbjct: 302 TLDELLESAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFMKELNM 361

Query: 318 TEPL--MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
            E L  +M +     T+    YPE+  ++  I   +  E+ER+  T+ +G  ++   +  
Sbjct: 362 KESLAEVMGIQLEFLTKF---YPEIKDSEDHIMNIISLEEERYQSTIKKGTSIVKRSIKR 418

Query: 376 L---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L   GK E +  D+   LYD HG+P + + +I      AG D  + N            +
Sbjct: 419 LKKEGKTE-MPLDMLMDLYDAHGIPPETVVEI------AG-DNFTVN---------VPDN 461

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
              L +G  EK   + KE +    +   DLL    F +++ +              + ++
Sbjct: 462 FFTLVAGAHEKDTSNKKESF-EIDYPETDLLFYKDFNQKEFE--------------AEVL 506

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
             + + G          K  +VFD+T FY E GGQ  D G    DG  + I +  +K   
Sbjct: 507 GVVEKDG----------KNTLVFDKTVFYPEGGGQPSDVGAISVDGTVVNI-NYAEKVNN 555

Query: 553 IFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           + +HH   +  +       V   ID+  R  L+ +HSATHL+  A   ILG H+ Q G+ 
Sbjct: 556 VVLHHVDGDVDLDNFVGKKVEGKIDWNRRITLARHHSATHLIVAAARKILGEHIWQAGAQ 615

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
                 R D++H K I+  EL  IE   N+ +  N+ +  +   R++A +     L   G
Sbjct: 616 KGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIKFYTRDEAESLYGFKLYQGG 675

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +     G+   A C GTHV  TG+I  + I     ++ G+ RI+   G 
Sbjct: 676 IVPGKSIRVVKIP----GIDVQA-CAGTHVLRTGDIGPIKINKTERVQDGVERIDFSAGT 730

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   +  +++ L+  +   KV    +    +  + E++  +  +   KL+  +  L  +
Sbjct: 731 AAVDSIQNENKLLRESSGIFKVDDDQLPKTCDRFFSEWKAQK--NEIDKLKSEIASLKMN 788

Query: 790 KIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED--- 845
            +AD       ++E++  K +K ++DA  K++Q    +    +   KA V+++   D   
Sbjct: 789 SLAD------DVTEINGLKVVKQLIDADFKELQK---IATDFTDNDKADVVLMGNNDGKI 839

Query: 846 -LLDRFNAVDLARLSAKVLGGGGG------GGRPHMAQSGGPNGNKADQAI 889
                 NA+D      +++    G      GGR  +AQ  GP     ++A+
Sbjct: 840 VGAASQNAIDAGIKVNEIIKKAAGVLGGGGGGRLTLAQGAGPKCENMNEAL 890


>gi|147920593|ref|YP_685610.1| alanyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121690502|sp|Q0W5Q9|SYA_UNCMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110621006|emb|CAJ36284.1| alanyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 875

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 210/896 (23%), Positives = 378/896 (42%), Gaps = 168/896 (18%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCV 68
           T+++ F++ G+  L     +      L F  +G+  F+  + +G+ +P  +AV   Q C+
Sbjct: 82  TYVKTFEQWGYVPLERYPTVCRWYEDLYFVAAGINDFQPYVVSGEIEPPARAVLEPQFCL 141

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVG T RH+T F M+G  +F       YFKE  I      LT+       
Sbjct: 142 R----FNDIDNVGITGRHYTGFIMVGQHTFNTPEKHVYFKEEGIGQIQHFLTQGL----- 192

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                                G+ A +I+    +++ W  A  G  GP  E F       
Sbjct: 193 ---------------------GIPAHEIV---FHEDVW--AGGGNFGPSIEYF------- 219

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                       R +E+ N V+MQ+EQ        L    ID G GLER A   Q    +
Sbjct: 220 -----------SRGLELGNQVYMQYEQTPDGGFKELRTKVIDMGAGLERWAWFSQGCPMS 268

Query: 244 YDIDLFKHL------------------------IQASEQVTGMKYEGNNIVN-------- 271
           YD    K +                        I   E++  +    N++          
Sbjct: 269 YDATFPKTMEFIYNKTGYRADPVFHAKFAKYAGILNVEEIEDVGSAWNDVAKSMEMDLGE 328

Query: 272 ----------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                       V+ DH RS    I DG LP+N G GY LR ++RR  C++ +  Y   +
Sbjct: 329 LKDMVYKIRAQYVLADHTRSLLVAIHDGALPSNVGGGYNLRNLLRR--CWSLIDQYQWDI 386

Query: 322 MMH-LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380
            ++ +  +   E GS Y EL     L +  +  E +R+ ++  +     D +   +   E
Sbjct: 387 DLNDIFRSHIDEFGSWYTELKDYGSLFD-IIDVERKRYEESRRKSK---DIIKRMVKAKE 442

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
            L  D   +LYD+ G+  +++++       A  D++      E+  +R +A      +  
Sbjct: 443 TLTADKLVELYDSQGISPELIKE-------AKPDVV----IPEDFYARVQARH---DAKA 488

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           T KI  +  +    T+ + Y+  R  KF                    +++VK +     
Sbjct: 489 TRKIEVNETQGLPKTEPMYYEKPREFKFE-------------------ANVVKLLT---- 525

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                      ++V D+T FY   GGQ GDTG   G    +++ DV K+ +G+ +H  ++
Sbjct: 526 ---------PTKLVLDRTLFYPLGGGQAGDTGFVNG----IKVKDVYKQ-DGVIIH--VL 569

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E  +      ++  +D   RR L+ +HSATH++++A   +LG HV Q G+  TP+  R D
Sbjct: 570 ESPMPPDTTKVIGEVDEARRRILAAHHSATHIVNYAARKVLGDHVWQAGAEKTPEKARLD 629

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRV 678
           +TH + +T  +L+ IE   ND+  + +PVV R M+R +A    +  +   G      +R+
Sbjct: 630 ITHYESLTFQQLQEIERVANDLAMKQIPVVVREMSRTEAEMEYSMRIYQGGAVPGKILRI 689

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +   DG  +    CGG HV +T ++  + ++S   I+ G+ R+E  +   A S +   
Sbjct: 690 IVI---DG--YDVEACGGIHVDNTSKVGFIKMLSSERIQDGVVRLEFKSLDNAVSEIQHH 744

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +  L+ ++    V   ++    +  + E+++L   + + + +L  + ++       + + 
Sbjct: 745 ESILREVSDLWGVGYDDIPKTAQRFFNEWKELGKKNKELQAELVQQTIAAALGKPGDTVD 804

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
            +++  D   L   + + +K+ +   ++  G +     S LI V E L + +  VD
Sbjct: 805 VVVTGADFGTLMKAVGSFKKEFKGRTVIFRGDNFAYGYSDLINVKEKLAEGYVNVD 860


>gi|147677396|ref|YP_001211611.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146273493|dbj|BAF59242.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 330

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/321 (38%), Positives = 191/321 (59%), Gaps = 13/321 (4%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R     NHSATHLLH AL  +LG HV+Q GS + P+ LRFD TH    T  EL+ 
Sbjct: 5   VDPARRAATCRNHSATHLLHKALKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPEELQK 64

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E+ VN ++   LPV     +  +A   GAAAL G KY +RVRVV +     G  S  LC
Sbjct: 65  VEELVNRMVLSALPVEAFETSLAEARKMGAAALFGEKYGERVRVVKM-----GDFSLELC 119

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTH+ +T E+ L  ++ ESS+ AG+RRIEA+TG+ A S++  ++E+L  +A  +K +  
Sbjct: 120 GGTHLRNTAEVGLFKLLGESSVGAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVKAAPH 179

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKEL 809
             V RVE + +  R L+  +   + +L    V+DL     ++  V  ++   +  D   L
Sbjct: 180 EAVRRVEGLLQTVRDLEAENEALQARLARYQVQDLMDRLREVKGVKVLAGQAAAPDMDSL 239

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           + ++D L+ ++ SG+I+L G + E + +++  VT+DL+++  +A  L +  A V+ GGGG
Sbjct: 240 RGMVDLLRDRVGSGVIVL-GSAGENRVNLVAAVTKDLVEKGLHAGKLVKELAPVV-GGGG 297

Query: 869 GGRPHMAQSGGPNGNKADQAI 889
           GGRP MAQ+GG + ++  +A+
Sbjct: 298 GGRPEMAQAGGKDPSRLKEAL 318


>gi|148642679|ref|YP_001273192.1| alanyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|205830145|sp|A5UKU6|SYA_METS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148551696|gb|ABQ86824.1| alanyl-tRNA synthetase, AlaS [Methanobrevibacter smithii ATCC
           35061]
          Length = 897

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 230/951 (24%), Positives = 391/951 (41%), Gaps = 184/951 (19%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           I+  F EF +K GH  +    ++     D   +   S       + +G  KP    +   
Sbjct: 56  IQQVFREFLEKEGHTPIKRYPILAKRWRDDVFLVGASIFCFQPWVTSGMVKPPANPLEIE 115

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q  VR     ND+DNVGRT RH T F M  +          Y+++  I+L  +       
Sbjct: 116 QPSVRL----NDVDNVGRTGRHMTCFTMGSHTVINTEENFIYWEDETIRLCHEFF----- 166

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                                 K  G++ ++I  I +   +WS    G  GPC E+    
Sbjct: 167 ----------------------KYIGINTEEICFIKS---WWSGG--GNEGPCYEV---- 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             C+ G            +E+  LVF+Q++  +  E+  +P   +DTG GLER+A + Q 
Sbjct: 196 --CVRG------------VELATLVFIQYKTLDNGEKEEIPIKVVDTGYGLERIAWISQG 241

Query: 240 KTNNYD------IDLFKHL---------IQASEQVTGM---------KYEGNNIVNH--- 272
               YD      +D  K L         +  + Q+ GM         K     + N    
Sbjct: 242 TPTAYDACFAPVVDKLKELTDVKVNTDILARNAQIAGMMDIEDIGDIKELRQQVANSLGI 301

Query: 273 ---------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                           +I DH R  +F++ADGI+P+N   GY+ R ++RR + + + L  
Sbjct: 302 TLDELLESAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFMKELNM 361

Query: 318 TEPL--MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
            E L  +M +     T+    YPE+  ++  I   +  E+ER+  T+ +G  ++   +  
Sbjct: 362 KESLAEVMGIQLEFLTKF---YPEIKDSEDHIMNIISLEEERYQSTIKKGTSIVKRSIKR 418

Query: 376 L---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L   GK E +  D+   LYD HG+P + + +I      AG D  + N            +
Sbjct: 419 LKKEGKTE-MPLDMLMDLYDAHGIPPETVVEI------AG-DNFTVN---------VPDN 461

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
              L +G  EK   + KE +    +   DLL    F +++ +              + ++
Sbjct: 462 FFTLVAGAHEKDTSNKKESF-EIDYPETDLLFYKDFNQKEFE--------------AEVL 506

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
             + + G          K  +VFD+T FY E GGQ  D G    DG  + I +  +K   
Sbjct: 507 GVVEKDG----------KNTLVFDKTVFYPEGGGQPSDVGTISVDGAVVNI-NYAEKVNN 555

Query: 553 IFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           + +HH   +  +       V   ID+  R  L+ +HSATHL+  A   ILG H+ Q G+ 
Sbjct: 556 VVLHHVDGDVDLDNFVGKKVEGKIDWNRRITLARHHSATHLIVAAARKILGEHIWQAGAQ 615

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
                 R D++H K I+  EL  IE   N+ +  N+ +  +   R++A +     L   G
Sbjct: 616 KGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIKFYTRDEAESLYGFKLYQGG 675

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +     G+   A C GTHV  TG+I  + I     ++ G+ RI+   G 
Sbjct: 676 IVPGKSIRVVKIP----GIDVQA-CAGTHVLRTGDIGPIKINKTERVQDGVERIDFSAGT 730

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   +  +++ L+  +   KV    +    +  + E++  +  +   KL+  +  L  +
Sbjct: 731 AAVDSIQNENKLLRESSGIFKVDDDQLPKTCDRFFSEWKAQK--NEIDKLKSEIASLKMN 788

Query: 790 KIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED--- 845
            +AD       ++E++  K +K ++DA  K++Q    +    +   KA V+++   D   
Sbjct: 789 SLAD------DVTEINGLKVVKQLIDADFKELQK---IATDFTDNDKADVVLMGNNDGKI 839

Query: 846 -LLDRFNAVDLARLSAKVLGGGGG------GGRPHMAQSGGPNGNKADQAI 889
                 NA+D      +++    G      GGR  +AQ  GP     ++A+
Sbjct: 840 VGAASQNAIDAGIKVNEIIKKAAGVLGGGGGGRLTLAQGAGPKCENMNEAL 890


>gi|213420684|ref|ZP_03353750.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 262

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/294 (37%), Positives = 162/294 (55%), Gaps = 32/294 (10%)

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYD
Sbjct: 1   MGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYD 59

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I        
Sbjct: 60  TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 112

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ VE   +GQ+  
Sbjct: 113 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVEAINAGQEAV 149

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H   +  G L+   ++ 
Sbjct: 150 VVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQ 208

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LRFD +H++ 
Sbjct: 209 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEA 262


>gi|326777472|ref|ZP_08236737.1| Alanine--tRNA ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326657805|gb|EGE42651.1| Alanine--tRNA ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 388

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 210/411 (51%), Gaps = 54/411 (13%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           +TF+E++++ GH  +  S+L+P +   ++FT SGM P      G+  P+ + +  VQ+C+
Sbjct: 8   STFVEYYEERGHRRITGSTLLPPDGDPVLFTTSGMHPLTPYLEGRPHPLGRRLVNVQRCL 67

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYIT 128
           R      DLD VG    H T FEMLG +S G Y   R++   + LLT+   +D   LY T
Sbjct: 68  RT----TDLDEVGDAT-HLTVFEMLGTWSLGDYGGPRSLDWGYGLLTEGLGVDPGLLYAT 122

Query: 129 VYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +        D  + +LW+ +        + +T  DN+W     GPCGP SEIF   GE 
Sbjct: 123 AFGGDGRTGPDTASVELWQGLG-----VPVELTVEDNWWPNDSAGPCGPDSEIFLWTGEG 177

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            P   P   +   R++E+WN V M   + +      LP+ ++DTG+GLER+A++LQ +++
Sbjct: 178 PPRSTPTRDD---RWVEVWNHVTMTHRRLDDGSLVPLPRRNVDTGLGLERLASLLQGESS 234

Query: 243 NYDIDLF---KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            +  D+F   + L+ A   +        +  + R++ DHLRS+  ++ DG+ PAN GRGY
Sbjct: 235 VFACDVFDPWRRLVPARWPL--------DEPSLRLVCDHLRSAVVVLGDGVRPANTGRGY 286

Query: 300 VLRRIMRRAMCY------ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR- 352
           VLRR++RR +        +R +G            L  E+     +  +  L  ++ LR 
Sbjct: 287 VLRRLVRRVLTVLWRDDPSRGVG-----------DLPVELVEHTLDHFRQDLRPDDVLRM 335

Query: 353 --SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
              E+ RF   L+RG     GVL+       L+ +    L+DTHGLP +++
Sbjct: 336 LIEEEHRFRGLLERGR----GVLAKPRFRGTLSEEDLHYLHDTHGLPRELV 382


>gi|182436874|ref|YP_001824593.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465390|dbj|BAG19910.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 388

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 161/300 (53%), Gaps = 30/300 (10%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           +TF+E++++ GH  +  S+L+P +   ++FT SGM P      G+  P+ + +  VQ+C+
Sbjct: 8   STFVEYYEERGHRRITGSTLLPPDGDPVLFTTSGMHPLTPYLEGRPHPLGRRLVNVQRCL 67

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYIT 128
           R      DLD VG    H T FEMLG +S G Y   R++   + LLT+   +D   LY T
Sbjct: 68  RT----TDLDEVGDAT-HLTVFEMLGTWSLGDYGGPRSLDWGYGLLTEGLGVDPGLLYAT 122

Query: 129 VYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +        D  + +LW+ +        + +T  DN+W     GPCGP SEIF   GE 
Sbjct: 123 AFGGDGRTGPDTASVELWQGLG-----VPVELTVEDNWWPNDSAGPCGPDSEIFLWTGEG 177

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            P   P   +   R++E+WN V M   + +      LP+ ++DTG+GLER+A++LQ +++
Sbjct: 178 PPRSTPTRDD---RWVEVWNHVTMTHRRLDDGSLVPLPRRNVDTGLGLERLASLLQGESS 234

Query: 243 NYDIDLF---KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            +  D+F   + L+ A   +        +  + R++ DHLRS+  ++ DG+ PAN GRGY
Sbjct: 235 VFACDVFDPWRRLVPARWPL--------DEPSLRLVCDHLRSAVVVLGDGVRPANTGRGY 286


>gi|229553797|ref|ZP_04442522.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|229312820|gb|EEN78793.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
          Length = 476

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/285 (38%), Positives = 163/285 (57%), Gaps = 10/285 (3%)

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRL-QITDVQ 547
           + ++AIV   ++ +E  +GQ  +++FD+TPFYAE GGQ+ D G     DG  L ++TDVQ
Sbjct: 66  ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQVADHGVIKAQDGTVLAEVTDVQ 124

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
               G  +H   V +G L       L++D   R+++S+NH+ATHLL  AL  +LG H  Q
Sbjct: 125 HAPNGQNLHTVTV-KGKLTKGQPYWLSVDRLRRKKVSLNHTATHLLDQALRDVLGEHTHQ 183

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS + PD LRFD T+   +T  +L+ +E  VN  I   LP+  + M   +A   GA A+
Sbjct: 184 AGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWDALPITWKEMPIAEAKKLGAIAM 243

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G KY D VR+VS+     G ++    GGTH ++T  + L  I SES I AG+RR+EA+T
Sbjct: 244 FGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNALGLFKITSESGIGAGVRRVEAVT 298

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
            + A  +L  Q + LK  A  LK+ Q  NV  +V ++  + +  Q
Sbjct: 299 SKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQADLKTEQ 343


>gi|167042221|gb|ABZ06953.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_ANIW93I24]
          Length = 898

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 239/933 (25%), Positives = 384/933 (41%), Gaps = 183/933 (19%)

Query: 14  FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAVTTVQKCVRA 70
           FF KNGH  +    ++      L FT + +V F+ +   +   E P    V   Q C+R 
Sbjct: 82  FFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVP-QTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  I L + L+T++F +D++ +  
Sbjct: 140 ---FKDLENVGLTGRHFSSFCMIGQHSIPNSQGYWKDECIDLDYRLVTEQFGVDKKEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            ++ ED     +W                        E G     S  FF +G       
Sbjct: 195 -IFVED-----VW------------------------EGGGSFGSSLEFFVKG------- 217

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD-- 245
                     +E+ N VF +F Q +      L +  ID G GLER A +       YD  
Sbjct: 218 ----------LELGNAVFTEF-QGDLSNYKTLDQQIIDMGAGLERFAWLTMGTPTAYDCC 266

Query: 246 -------------------------IDLFKHLIQASE---------QVTGMKYEG-NNIV 270
                                     ++ KHL + S+         + +G+  E  N I+
Sbjct: 267 FGPITNNLLQQVGIDANDELLVTYFTEIAKHLERFSDLSEVRKNAIKTSGLSDEQINKII 326

Query: 271 NH----RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L      M  ++
Sbjct: 327 TPLEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKFD-MNEIV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
                 + + YPEL + +  I+  +  E  R+  +  R    ++ ++S L +   +  D 
Sbjct: 386 DTQINYLKNTYPELEKTREDIKTIIGIESGRYENSKLR----MEKIVSKLNQKPTV--DD 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LY++ G+  D ++++     +        +Q L + + +     + L          
Sbjct: 440 LIRLYESDGVTPDYLKEMKVISDIPSTFYSKLSQ-LHQSKKQKEQDQVSL---------- 488

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
              EK   T+ + Y    G    + D K+L             S  K             
Sbjct: 489 ---EKLPDTELLYY----GDDPKEFDAKIL------------KSFDKY------------ 517

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 VV D+T FYA  GGQ  D G       + ++ DV K    + VH   ++ GI +
Sbjct: 518 ------VVLDKTSFYARGGGQEPDHGTIE----KFEVVDVVKHG-NVVVHE--LKNGIPK 564

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ID + R  ++ NH++TH+L+ +  ++LGS V Q+ +    D  R D+TH   
Sbjct: 565 EGSTVSCVIDSKRRDGITKNHTSTHILNSSTRSVLGSWVWQHSAFKEEDHARLDITHHSA 624

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +T  E   IE   N I+ +N+ V     +R  A       +   G      VR+VS+  E
Sbjct: 625 LTDDETAKIEKLANSIVEKNMSVTIESFDRGTAEQKYGFKIYQGGIVPVKSVRIVSI--E 682

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D  V +   CGGTHV  TGEI L+ I     I+ G+ RIE ++G  A  +    D  +  
Sbjct: 683 DFDVEA---CGGTHVKKTGEIELIKITRTKRIQDGVVRIEFVSGPTALDYTKQHDASIIK 739

Query: 745 LASFLKVSQGNVVGRVE---EIWEEYRKLQLIHAKRKLQLNVED---LSCHKIADVNFMS 798
            ++ LK        R E   E+ E +  L     + K+  N+ D   +   +    NF S
Sbjct: 740 KSAELKEKMEMKEKRREKKQELRERFPILVDSIIQSKIGTNIVDEIIVDMTESGKPNFCS 799

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIML-VGISKE-KKASVLIVVTEDLLDRFNAVDLA 856
            I  + D  EL  +    QK I+    M+  G+ ++  K   +I   E       AVD+A
Sbjct: 800 TISDQYD--ELFHISLG-QKLIEKDPWMVYCGVFEDGDKIRTIIYSGEQAAKYKKAVDIA 856

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +L +++LGG GGG +   AQ GG    K + AI
Sbjct: 857 KLVSEILGGAGGGNQ-RFAQGGGKEKFKKNDAI 888


>gi|259015949|gb|ACV89257.1| alanyl-tRNA synthetase [Austroneurorthus brunneipennis]
          Length = 231

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/233 (42%), Positives = 138/233 (59%), Gaps = 21/233 (9%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEMLGN+SFG YFK      AW+LLT+ F L   +LY+T +        + D+E  
Sbjct: 2   HHTFFEMLGNWSFGDYFKREICTWAWELLTQVFKLPPDQLYVTYFGGHKESGLEPDDECR 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGER 196
            +W  + G+    +I  +  DNFW M ETGPCGPCSE+ FD+ G      L   + +   
Sbjct: 62  NIWIGL-GVPETHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGNREAAHL--VNMDDPN 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+GLER+ +V+Q+K  NYD DLF+ L  A 
Sbjct: 119 VLEIWNLVFIQFNRESDASLKLLPKKHIDCGLGLERLVSVIQQKPANYDTDLFQPLFAAI 178

Query: 257 EQVTGMK-YEGNN--------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           ++ TG + Y GN          + +RV+ DH R+ +  ++DG  P N GRGYV
Sbjct: 179 QKGTGAREYRGNVGDDDQDGIDMAYRVLADHARTLTIALSDGGRPDNTGRGYV 231


>gi|315427515|dbj|BAJ49118.1| alanyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 865

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 198/821 (24%), Positives = 342/821 (41%), Gaps = 158/821 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V   R +F+EFF + GH  +    ++      L  T++ +V F+   T G   P    +
Sbjct: 17  SVREARQSFIEFFAQRGHAPIKPYPIVARWRTDLYLTDASIVDFQPWVTNGIAPPPANPL 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
              Q C R      DLD +G T  RH T FEM G+ +F   + E+ I   W   T E+  
Sbjct: 77  VISQPCARL----VDLDKIGLTFGRHLTVFEMGGHHAFN--YPEKKIY--WKSETAEY-- 126

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
                            +    + G+   +++     +++W  A  G  GPC E+     
Sbjct: 127 ---------------CHEFMTSVLGVPTGELV---YKESWW--AGGGNEGPCLEV----- 161

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             I GGL           E+  LVFMQF+  +  ER   P  ++DTG G+ER+A   Q+ 
Sbjct: 162 --IAGGL-----------ELATLVFMQFKTLDG-ERAETPIKTVDTGYGIERLAWFSQQT 207

Query: 241 TNNYDIDLFKHLIQASE----------------QVTGMKYEGNN---------------- 268
            + +D    + L +  E                + TG+   G +                
Sbjct: 208 PSAFDAIYGELLAKVRELIPVNRPDEELLIKYAKYTGLVKPGADATVSELRRKVASMAGI 267

Query: 269 ---IVNHRVI--------VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
               VN +++        +D+ ++ +F++A+G++P+N   GY+ R ++RRA    R++  
Sbjct: 268 SVETVNEQIVPYEKVYQALDYSKAIAFIVAEGVVPSNVKTGYLTRLLIRRAYRLLRMVDA 327

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E L+  L+          +P L + +  + + +  E  +F +T+ RG    + VL  L 
Sbjct: 328 EEKLL-DLVDLQIRYWEKDFPHLSEMREEVLDIVEHEVNKFRETIKRGT---ETVLRELR 383

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             + ++ +   + YD  GL  DI+ ++   +G+      +F + +  +  R +     + 
Sbjct: 384 STKAISVEKLIQYYDDKGLTPDIVAEVAAKQGVEVTVPENFYELVASRHLREKP----VK 439

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +   ++I  S    Y  T  + Y+      F     KVL       + NG          
Sbjct: 440 TTMQKQIDVS---SYPKTHKLYYEQPNSYSFRA---KVL------GVENGY--------- 478

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                          V+ D T FY E GG +GDTG  +       + D Q   E + VH 
Sbjct: 479 ---------------VILDATLFYPEGGGAVGDTGTLVCRDKVCTVVDTQI-LEDVVVHR 522

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             VE  +      +   +D + R+ +  +H+ATH+L  A+  +LG H  Q G+   P+  
Sbjct: 523 --VEGPVPDVGEEVEGYVDAERRQAIVRHHTATHILLGAVRRVLGKHAWQAGARKEPEKG 580

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-------IASGAAALLGT 670
           R D  H K +T  +++ IE   N ++A+ +PV  + M+R +A       +  G    LG 
Sbjct: 581 RLDFYHHKRLTLEQIREIEKLANRVVARRIPVRIKWMDRNEAEETYGFGLYQGGEVPLGV 640

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RVV +   D     +  CGG H  +T ++ L+ IVS   I+ G+ RIE + G  
Sbjct: 641 -----IRVVEIPGWD-----AEACGGIHCENTEDVGLIKIVSSERIQDGVERIEFVAGPA 690

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
                 G +  L  +A  L+    ++  +V E+ E  R L+
Sbjct: 691 NLHRYQGMETMLHEVAEKLQAPVEDIPKKVAELDENLRILR 731


>gi|55379213|ref|YP_137063.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|59798483|sp|Q5UZE6|SYA_HALMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55231938|gb|AAV47357.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 927

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 229/955 (23%), Positives = 403/955 (42%), Gaps = 186/955 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           +++ +R  FL FF+   HE +   P ++    +D  ++ T + +  F+ + T G   P  
Sbjct: 60  SLTEMREAFLSFFEDRDHERIDPYPVAANRWRDD--VLLTQASIYDFQPLVTSGTTPPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK-ERAIQLAWDLLTKE 117
             +   Q C+R      D+DNVG+T RH   FEM+ + +F      E   Q A+     E
Sbjct: 118 NPLCISQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNAREDIEDPEQYAY-----E 168

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++  +   +   DE      L++++ G + D+I+ I   ++ W     G  GP  E+ +
Sbjct: 169 GEVYWKNETVQYCDE------LFEEM-GANLDEIVYI---EDPWVGG--GNAGPAIEVIY 216

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RF-ILPKMSIDTGMG 229
                             R  E+  LVFM  EQ +  E       R+  +    +DTG G
Sbjct: 217 ------------------RGAELATLVFMSMEQDSDGEYEMKDGNRYSPMDTYIVDTGYG 258

Query: 230 LERMATVLQEKTNNYD------------------IDLFKHLIQASEQVTGMKY--EGNNI 269
           LER   + Q     Y+                   D  + ++  + ++ G     E  +I
Sbjct: 259 LERWTWMSQGTPTVYEAVYPDMIAFLKDNAGIELTDEEERIVHEAAKLAGRMDIDEAEDI 318

Query: 270 VNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
              R                          I DH R+ ++++ DGI+P+N G GY+ R +
Sbjct: 319 EAERDTIAAEVGVEVEEMRDLMAPLEDIYAIADHCRTLAYMLGDGIVPSNVGTGYLARMV 378

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI--QAKLLIEETLRSEDERFGKTL 362
           +RR       +G   PL          E+     E +  + +  I + +R+E E++ +TL
Sbjct: 379 LRRTKRLVDGVGVDAPL---------DELVDMQAERLDYENRDTIRDIVRTEVEKYRETL 429

Query: 363 DRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           DRG   +  +      K E +      +LYD+HG+  D++++I   +G+A +D+     A
Sbjct: 430 DRGGRRVRQLADEYAEKGEPIPTSELVELYDSHGIQPDMVEEIAAEKGVA-VDVPDDFYA 488

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  QR        G     TE+     +++         +L    +   ED++       
Sbjct: 489 VVAQRH-------GGDDTATEESQTPYEDRL-------EELPETDRLYYEDQQ------- 527

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   ++V  +  + E           +VV DQT FY E GGQ  D G    D +  
Sbjct: 528 ---RTEFEAVVLEVFDRDE--------DTYDVVLDQTMFYPEGGGQPPDKGTLSTDDVSA 576

Query: 542 QITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           ++TDVQ+  + + VH    + G    +R +      +D   R++L  +H+ATH++ H+  
Sbjct: 577 EVTDVQQYGD-VIVHTCDDDPGKGEFVRGQ------VDATRRQRLMQHHTATHIVIHSAR 629

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q G+    D  R D+ H + ++  ++K IE   NDII  N+ V     +R D
Sbjct: 630 QVLGEHVRQAGAQKGTDSARIDIRHYESVSREKVKEIERLANDIIQDNITVSQEWPDRND 689

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G    +++R+++V     G    A CGGTHV+ TG+I  + +++   I
Sbjct: 690 AEERYGFDLYQGGIPAGEQIRLITV-----GDDVQA-CGGTHVARTGDIGAVKLLNTERI 743

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-------- 768
           + G+ R+    G  A       ++ L   A  L V+   V    E  ++E++        
Sbjct: 744 QDGVIRLTFAAGNAAIEATQRTEDALTEAADILDVAPDAVPETAERFFDEWKARGKEIEQ 803

Query: 769 -KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGII 825
            K QL  A+     + E++       V   + ++  +D+   EL++  +A+   ++ G I
Sbjct: 804 LKEQLAEARASGGGDNEEVG------VGDATAVVGRIDADMDELRAQANAI---VEQGNI 854

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            ++G   +   +  +V   D +D      +  L+ +V GGGGG   P  AQ GGP
Sbjct: 855 AVLGSGLD--GAQFVVSVPDGVDVDAGEVVGELAGRVGGGGGGP--PDFAQGGGP 905


>gi|315425504|dbj|BAJ47166.1| alanyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 909

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 198/821 (24%), Positives = 342/821 (41%), Gaps = 158/821 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V   R +F+EFF + GH  +    ++      L  T++ +V F+   T G   P    +
Sbjct: 61  SVREARQSFIEFFAQRGHAPIKPYPIVARWRTDLYLTDASIVDFQPWVTNGIAPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
              Q C R      DLD +G T  RH T FEM G+ +F   + E+ I   W   T E+  
Sbjct: 121 VISQPCARL----VDLDKIGLTFGRHLTVFEMGGHHAFN--YPEKKIY--WKSETAEY-- 170

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
                            +    + G+   +++     +++W  A  G  GPC E+     
Sbjct: 171 ---------------CHEFMTSVLGVPTGELV---YKESWW--AGGGNEGPCLEV----- 205

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             I GGL           E+  LVFMQF+  +  ER   P  ++DTG G+ER+A   Q+ 
Sbjct: 206 --IAGGL-----------ELATLVFMQFKTLDG-ERAETPIKTVDTGYGIERLAWFSQQT 251

Query: 241 TNNYDIDLFKHLIQASE----------------QVTGMKYEGNN---------------- 268
            + +D    + L +  E                + TG+   G +                
Sbjct: 252 PSAFDAIYGELLAKVRELIPVNRPDEELLIKYAKYTGLVKPGADATVSELRRKVASMAGI 311

Query: 269 ---IVNHRVI--------VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
               VN +++        +D+ ++ +F++A+G++P+N   GY+ R ++RRA    R++  
Sbjct: 312 SVETVNEQIVPYEKVYQALDYSKAIAFIVAEGVVPSNVKTGYLTRLLIRRAYRLLRMVDA 371

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E L+  L+          +P L + +  + + +  E  +F +T+ RG    + VL  L 
Sbjct: 372 EEKLL-DLVDLQIRYWEKDFPHLSEMREEVLDIVEHEVNKFRETIKRGT---ETVLRELR 427

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             + ++ +   + YD  GL  DI+ ++   +G+      +F + +  +  R +     + 
Sbjct: 428 STKAISVEKLIQYYDDKGLTPDIVAEVAAKQGVEVTVPENFYELVASRHLREKP----VK 483

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +   ++I  S    Y  T  + Y+      F     KVL       + NG          
Sbjct: 484 TTMQKQIDVS---SYPKTHKLYYEQPNSYSFRA---KVL------GVENGY--------- 522

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                          V+ D T FY E GG +GDTG  +       + D Q   E + VH 
Sbjct: 523 ---------------VILDATLFYPEGGGAVGDTGTLVCRDKVCTVVDTQI-LEDVVVHR 566

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             VE  +      +   +D + R+ +  +H+ATH+L  A+  +LG H  Q G+   P+  
Sbjct: 567 --VEGPVPDVGEEVEGYVDAERRQAIVRHHTATHILLGAVRRVLGKHAWQAGARKEPEKG 624

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-------IASGAAALLGT 670
           R D  H K +T  +++ IE   N ++A+ +PV  + M+R +A       +  G    LG 
Sbjct: 625 RLDFYHHKRLTLEQIREIEKLANRVVARRIPVRIKWMDRNEAEETYGFGLYQGGEVPLGV 684

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RVV +   D     +  CGG H  +T ++ L+ IVS   I+ G+ RIE + G  
Sbjct: 685 -----IRVVEIPGWD-----AEACGGIHCENTEDVGLIKIVSSERIQDGVERIEFVAGPA 734

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
                 G +  L  +A  L+    ++  +V E+ E  R L+
Sbjct: 735 NLHRYQGMETMLHEVAEKLQAPVEDIPKKVAELDENLRILR 775


>gi|126179459|ref|YP_001047424.1| alanyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|189082113|sp|A3CVP2|SYA_METMJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125862253|gb|ABN57442.1| alanyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 915

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 233/968 (24%), Positives = 389/968 (40%), Gaps = 205/968 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           NVS +R  FL FF+++GH  L    +       +  T + +  F+   T G   P    +
Sbjct: 58  NVSEMREAFLSFFERHGHTRLERYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K++ + L  + +  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTLFEMMAHHAFNTPEEQIYWKDQTVALCDEFI-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                   K I G  A    R++  ++ W     G  G   E+ 
Sbjct: 172 ------------------------KSIGGDPA----RVSYKEHPWYGG--GNAGASVEVL 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMS-----IDTG 227
                   GGL           E+  LVFM   +Q   +  +    +P        +DTG
Sbjct: 202 I-------GGL-----------EVATLVFMNLGRQKTDQPPVDVNGVPYYPMRLNIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDI----------------DL-----FKHLIQASEQVTG-MKYE 265
            GLER+    +     YD                 DL     F  ++  S +  G M   
Sbjct: 244 YGLERLVWASKGSPTIYDAVFPEMVSRLMRSARLEDLLDNPEFTKIMGLSARFAGVMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G N+ N R                          I DH R  ++++ D I+P+N   GY+
Sbjct: 304 GTNLYNLRRKVAEAIDVPVERLERIVVPIEKVYSIADHTRCLAYMLGDCIVPSNVREGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL-------------LI 347
            R ++RR +            MM+ L      M  A  +LI+A++              +
Sbjct: 364 ARLVLRRTL-----------RMMNDL-----SMDDALTDLIEAQMQVVGAENFEQDVDAV 407

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            E + +E+ R+  TL+RG  ++  +  ++  K   +  +    LYD+HG+P ++++++  
Sbjct: 408 REIVENEEARYASTLERGARIVQKIARNYRAKSSRVPLEEVITLYDSHGIPPEMVKEVAA 467

Query: 407 ARGLAGIDII-SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           A G A ++I  +F   + E  S A+  +                              RG
Sbjct: 468 AEG-AVVEIPDNFYSLIAETHSEAQKEA------------------------------RG 496

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   R+     PP   T  +   +   V+   +V +   G     V DQT FY E G
Sbjct: 497 EDPLDAYRERAVSLPP---TKKLYYELPNEVEFEAMVLDYFDGM---AVLDQTLFYPEGG 550

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  DTG  +     +++ +V K  E I   H +    ++R +  +   +D + R  L  
Sbjct: 551 GQPSDTGTLVTSESMVRVEEVVKLGEVIL--HRVTGGPLMRGD-RVKGMVDEERRWSLMR 607

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH+L HA   +LG HV Q G+    +  R D+ H + IT  EL+ IE   N ++  
Sbjct: 608 HHTATHVLLHAAQQVLGVHVHQAGAQKGSEVSRLDIRHYRHITPDELRRIELEANRLVMA 667

Query: 646 NLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           + PV   +  R  A       L   G      +R V V     G    A C GTHV +TG
Sbjct: 668 DTPVYIHVEERTKAEQKYGFGLYQGGVPPGREIRTVQV-----GADVQA-CAGTHVRTTG 721

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  + ++    I+ G+ R+    G  A   +    + L+  A  + V   N+   V   
Sbjct: 722 EIGPIRVLGVEHIQDGVERLVFAAGIAAVHAVQHLGDLLQESADMVSVQPENLPATVARF 781

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           + E+++ +      +LQ  V DL    +    V+ +  ++  +D+   + V  A     +
Sbjct: 782 FSEWKEQK--KEIERLQKKVVDLEMQNLDGEVVDGVRVVVRTLDATHKELVALATTVADE 839

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            G+ +          +V +V T       NAVD+ R    +L GG GGG+P++AQ  GP+
Sbjct: 840 GGVALFAS----SDGTVKVVATSG-APTVNAVDIVREVCGIL-GGKGGGKPNLAQGAGPD 893

Query: 882 GNKADQAI 889
            ++ ++A+
Sbjct: 894 ASRLEEAL 901


>gi|148645076|gb|ABR01062.1| AlaS [uncultured Geobacter sp.]
          Length = 140

 Score =  181 bits (459), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 81/143 (56%), Positives = 101/143 (70%), Gaps = 8/143 (5%)

Query: 73  KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE 132
           KHNDL+ VGRT RHHTFFEMLGNFSFG YFK +AI  AW+ LT E  L + RLY+TVY +
Sbjct: 1   KHNDLEKVGRTARHHTFFEMLGNFSFGDYFKTQAIAFAWEFLTVELGLSKDRLYVTVYQD 60

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE 192
           D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G   PG   GS +
Sbjct: 61  DDEAAAIWHEQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNG---PGTGCGSPD 117

Query: 193 -----EGERYIEIWNLVFMQFEQ 210
                + +RY+EIWN VFMQF +
Sbjct: 118 CAVGCDCDRYMEIWNNVFMQFNR 140


>gi|314981336|gb|EFT25430.1| DHHA1 domain protein [Propionibacterium acnes HL110PA3]
          Length = 473

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 146/492 (29%), Positives = 226/492 (45%), Gaps = 38/492 (7%)

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   + EQR+RA+A S       T++  +S     G T F+GY            
Sbjct: 9   VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFLGY------------ 56

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V + V  I+  G  V  A  G  VEVV  +TPFYAE GGQ  D+G
Sbjct: 57  -----------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAETPFYAEMGGQDSDSG 105

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +GI  ++ DVQ+   G+ VH   ++ G L     +   ++   R      H+ATH+
Sbjct: 106 IIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPTTRFGACQAHTATHV 164

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+  N  I  +  V   
Sbjct: 165 IHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEERCNVAIHDDFEVTDT 224

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  EDA A GA A+ G KY   VRVV    E  G  S  LCGGTHV+STG I +L ++ 
Sbjct: 225 QMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTHVASTGRIGMLSLLG 280

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYR 768
           E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  RV     ++ E  R
Sbjct: 281 EQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLADRVSKLATDLKEAER 340

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQ--SGI 824
           KL      R+L   V+D+        +F  ++  +  V   +L+++   ++ +++    +
Sbjct: 341 KLGAAR-TRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTLATEIRARVKDRPAV 399

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + L+G + +K A ++            A  L ++    + GG GGG+  MAQ  G +   
Sbjct: 400 VTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGGKDDMAQGAGSDPTG 458

Query: 885 ADQAIAGVASFL 896
            D A+  V + L
Sbjct: 459 IDAALRAVNTEL 470


>gi|18652852|dbj|BAB84685.1| Ala-tRNA synthetase [Methylobacillus glycogenes]
          Length = 315

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 13/316 (4%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T+ E++ IE+ VN  I  
Sbjct: 3   HHSATHLMHKALREVLGGHVQQKGSLVDSDKTRFDFSHNAPVTAEEIRRIEEIVNTEILA 62

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N P   R+M  ++A  +G   L G KY D VRV+ +        S  LCGGTHVS TG+I
Sbjct: 63  NAPTQARVMPIDEAQKTGTMMLFGEKYGDEVRVIDIGS------SRELCGGTHVSRTGDI 116

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  +VSES + AG+RRIEA TG  A  H+  Q + L   A+  K     + G + +  +
Sbjct: 117 GLFKVVSESGVAAGVRRIEAATGDVALHHIQQQQQLLADAAASFKAPAAELAGEISQTLD 176

Query: 766 EYRKL--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI 820
           + + L  +L   K KL  +  D    +  DV+    ++  +   D+  L+  MD L+ K+
Sbjct: 177 QLKSLEKELARLKSKLASSQGDELASQAVDVDGVKVLAATLEGADANTLRETMDKLKDKL 236

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           ++  I+L  ++ + K SV   VT D L +  A +L    A  + GG GGG+P MA +GG 
Sbjct: 237 KTAAIVLASVNGD-KVSVAAGVTADTLAKVKAGELVNFVAAQV-GGKGGGKPDMAMAGGT 294

Query: 881 NGNKADQAIAGVASFL 896
           +  K  QA+  VA ++
Sbjct: 295 DAGKLPQALVSVAGWV 310


>gi|288559749|ref|YP_003423235.1| alanyl-tRNA synthetase AlaS [Methanobrevibacter ruminantium M1]
 gi|288542459|gb|ADC46343.1| alanyl-tRNA synthetase AlaS [Methanobrevibacter ruminantium M1]
          Length = 910

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 233/972 (23%), Positives = 403/972 (41%), Gaps = 189/972 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++  I+ TF  F +K GHE +    ++     D   +   S       + +G  +P    
Sbjct: 52  DLYGIQETFRTFLEKEGHEPISRYPILAKRWRDDVFLVGASIFCFQPWVTSGLVEPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q  +R     ND+DNVGRT RH T F M G+ +               ++ K  + 
Sbjct: 112 LEVEQPSIRL----NDVDNVGRTGRHMTCFTM-GSHT---------------VINKPDNF 151

Query: 121 DQRRLYITVYDEDEE---AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                   +Y EDE      + +K I G++ +++  I +   +W     G  GPC E+  
Sbjct: 152 --------IYWEDETIRLCHEFFKSI-GINTEELTFIKS---WWKGG--GNEGPCYEV-- 195

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G            +E+  LVFMQ++     ++  +P   +DTG GLER+A + 
Sbjct: 196 ----CCRG------------VELATLVFMQYKTLENGDKEEIPIKVVDTGYGLERIAWIS 239

Query: 238 QEKTNNYD------IDLFKHLIQAS---------EQVTGMK--YEGNNIVNHR------- 273
           Q     YD      +D  K +   S          ++ GM    +  +I + R       
Sbjct: 240 QGTPTAYDACFAPVVDKLKEITNVSVNEEILARNAEIAGMMDIEDIGDIRDLRQQVADSL 299

Query: 274 ------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                             +I DH R  +F++ADGI+P+N   GY+ R ++RR + + + L
Sbjct: 300 NISLEEYLENAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFMKEL 359

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
              E L   ++      +   YPE+ +++  I   +  E+ER+ KT+++G   +   +  
Sbjct: 360 EMEESLS-DIMAIQLDFLREFYPEIAESQEHIMNIINLEEERYAKTIEKGKKTVKRTIKR 418

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
           L K+                +PL+ + D+  A+G+         + +EE           
Sbjct: 419 LKKE------------GKTSMPLETLIDLYDAQGMPP-------ETVEE----------- 448

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP-PIDLTNGVSSIVKA 494
           L SG  +   F +        F+  +       M E+ KV  ++   +D+        K 
Sbjct: 449 LASGDKD---FEV--------FVPDNFFTIVADMHEEDKVAKKETFELDVPETELDFYKD 497

Query: 495 IVQQ---GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           I Q+   G I+E       + ++ D+T FY E GGQ  D G    +G   ++    +K +
Sbjct: 498 IYQKESDGTIIEVVEKDGNLNIILDRTIFYPEGGGQPSDIGIISIEGTIYEVV-YAEKLD 556

Query: 552 GIFVHH----------AIVE--RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           G+ +H           ++VE  R  + TE+ +   I++  R  L+ +H+ THL+  A   
Sbjct: 557 GVVLHRIATKEDEDVASLVEDLRKYIGTEVHM--AINWNRRITLARHHTGTHLVIAAARK 614

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG H+ Q G+       R D+ H K IT  EL  IE   N+ +  N+ +    ++R+DA
Sbjct: 615 ILGQHIWQAGAQKGLARSRIDLAHYKRITIGELDEIEKLANEYVMMNIDLDINWLSRDDA 674

Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L   G     ++RVV +     G+   A C GTH+S TGE+  + I     ++
Sbjct: 675 EKKYGLILYQGGVVPGSQIRVVKIP----GIDVQA-CAGTHLSRTGEVGPIKINKTERVQ 729

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RI+   G  A   +      +K  +    V+   +    E  + E++  +  +   
Sbjct: 730 DGVERIDFSAGLAAIDSIQNDKAIIKESSDVFSVTNDQLPKTCERFFNEWKAQK--NEIA 787

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +LQ  + +L    +A+  F      EV+  K LK ++DA  K++Q    +    +   K 
Sbjct: 788 RLQKEIANLKVSTLAENAF------EVNGLKVLKEILDANIKELQK---IATDFTDNDKV 838

Query: 837 SVLIV----------VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            ++ +           +++ +D    V+     A  L GGGGGGRP +AQ  GPN +K  
Sbjct: 839 DLVFIGNNEGKIVGSASKNAIDSGVQVNNIIKEAASLLGGGGGGRPTLAQGAGPNADKMA 898

Query: 887 QAIAGVASFLKK 898
            A+      L K
Sbjct: 899 DALDLAVELLNK 910


>gi|330960443|gb|EGH60703.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 329

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/306 (40%), Positives = 174/306 (56%), Gaps = 13/306 (4%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R   S+NHSATHLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED V
Sbjct: 10  RNATSLNHSATHLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIV 69

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I +N PVVT   + E A   GA AL G KY D VRV+S+    GG  S  LCGG H 
Sbjct: 70  NAEIRKNTPVVTEETDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHA 125

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S TG+I L  IVSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ +
Sbjct: 126 SRTGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDK 185

Query: 760 VEEIWEEYR----KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVM 813
           +  + E  R    +L+ + AK       +DLS     +  V  ++  +   D K L +++
Sbjct: 186 LTAVLERNRLLEKQLEQLQAKAASAAG-DDLSSAAQDVKGVKVLATRLDGQDGKALLALV 244

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D L+ K+   +I+L G   E K  ++  VT+DL  +  A DL +  A    GG GGGRP 
Sbjct: 245 DQLKNKLGRAVILL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPD 302

Query: 874 MAQSGG 879
           MAQ GG
Sbjct: 303 MAQGGG 308


>gi|255521189|ref|ZP_05388426.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
          Length = 319

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/323 (37%), Positives = 175/323 (54%), Gaps = 21/323 (6%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I +
Sbjct: 5   NHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE 64

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I
Sbjct: 65  QINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADI 119

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  
Sbjct: 120 GLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQA 179

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDA 815
           + R++     KR+ +  +  L+    AD          V  ++  ++  D  +L+  +D 
Sbjct: 180 DLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDN 234

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            + K   GI++L  +  +K   +  V  E +   ++A  L +  A    GG GGGRP MA
Sbjct: 235 WKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 293

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N  +   A+  V++++K+
Sbjct: 294 QAGGKNPAELGTALDYVSTWVKE 316


>gi|302867187|ref|YP_003835824.1| alanine--tRNA ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302570046|gb|ADL46248.1| Alanine--tRNA ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 397

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 157/301 (52%), Gaps = 24/301 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I  TFL+ +Q++ H   P SSL+P     ++FT SGM P      G+  P  + +  VQ+
Sbjct: 6   ITRTFLDHYQRHDHRRAPESSLVPPPGDPVLFTTSGMHPLTPYLLGRPHPGGRRLANVQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      DLD VG +  H T F+MLG++S G Y    +++  ++LLT  F +   +L+
Sbjct: 66  CLRT----TDLDEVGDST-HLTVFQMLGSWSLGDYDIATSLRWGFELLTDGFGIPAGKLH 120

Query: 127 ITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            TV+        D+ A   W  + G+  + +      DN+WS   TGPCGP SEIF   G
Sbjct: 121 ATVFGGDDRLGPDDTARDTWTGL-GVPVEAL----GEDNWWSNGPTGPCGPDSEIFVWTG 175

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  P G P +     R++E+WN V M++ +        LP  SIDTGMGLER+  VL+  
Sbjct: 176 DGPPTGTPSTDA---RWVEVWNHVQMRYHRHPDGRLTPLPHSSIDTGMGLERLEMVLRGD 232

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            + +  D  +  +        ++ E       RV+ DHLRS+  ++ DG+ P N GRGYV
Sbjct: 233 RSVFTGDGLRPWVDVVRDRWDLRGE-----ELRVVSDHLRSAVVVLGDGVRPGNTGRGYV 287

Query: 301 L 301
           L
Sbjct: 288 L 288


>gi|315506404|ref|YP_004085291.1| alanine--tRNA ligase [Micromonospora sp. L5]
 gi|315413023|gb|ADU11140.1| Alanine--tRNA ligase [Micromonospora sp. L5]
          Length = 397

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 158/301 (52%), Gaps = 24/301 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I  TFL+ +Q++ H   P SSL+P     ++FT SGM P      G+  P  + +  VQ+
Sbjct: 6   ITRTFLDHYQRHDHRRAPESSLVPPPGDPVLFTTSGMHPLTPYLLGRPHPGGRRLANVQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      DLD VG +  H T F+MLG++S G Y    +++  ++LLT  F +   +L+
Sbjct: 66  CLRT----TDLDEVGDST-HLTVFQMLGSWSLGDYDIATSLRWGFELLTDGFGIPAGKLH 120

Query: 127 ITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            TV+        D+ A   W  + G+  + +      DN+WS   TGPCGP SEIF   G
Sbjct: 121 ATVFGGDDRLGPDDTARDTWTGL-GVPVEAL----GEDNWWSNGPTGPCGPDSEIFVWTG 175

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  P G P +     R++E+WN V M++ +        LP  SIDTGMGLER+  VL+  
Sbjct: 176 DGPPTGTPSTDV---RWVEVWNHVQMRYHRHPDGRLTPLPHPSIDTGMGLERLEMVLRGD 232

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            + +  D  +  +        ++ E     + RV+ DHLRS+  ++ DG+ P N GRGYV
Sbjct: 233 RSVFTGDGLRPWVDVVRDRWDLRGE-----DLRVVSDHLRSAVVVLGDGVRPGNTGRGYV 287

Query: 301 L 301
           L
Sbjct: 288 L 288


>gi|167044057|gb|ABZ08742.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_APKG4H17]
          Length = 898

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 227/951 (23%), Positives = 386/951 (40%), Gaps = 205/951 (21%)

Query: 14  FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAVTTVQKCVRA 70
           FF KNGH  +    ++      L FT + +V F+ +   +   E P    V   Q C+R 
Sbjct: 82  FFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVP-QTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSF---GGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  + L + LLT++F +D++ +  
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSIPNSNGYWKDECVDLDYRLLTEQFGVDKKEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            V+ ED     +W                        E G     S  FF +G       
Sbjct: 195 -VFVED-----VW------------------------EGGGSFGSSLEFFVKG------- 217

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD-- 245
                     +E+ N VF +F Q +      L +  ID G GLER A +       YD  
Sbjct: 218 ----------LELGNAVFTEF-QGDLSNYKTLDQQIIDMGAGLERFAWLTMGTPTAYDCC 266

Query: 246 ---------------------IDLFKHLIQASEQVTGMKYEGNNIVNH------------ 272
                                +  F  + +  E+ + +     N +              
Sbjct: 267 FGPITNNLLQQAGIDTNDELLVTYFTKIAKHFERFSDLSEVRKNAIKSAGLSDEQVNKII 326

Query: 273 ------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L      M  ++
Sbjct: 327 IPLEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKLD-MNGIV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
            A    + + YPEL + +  I+  +  E  R+  +  R    ++ ++S L +   +  D 
Sbjct: 386 DAQIDYLKNTYPELEKTREDIKTIIGIESGRYENSKLR----MEKIVSKLNQKPTV--DD 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LY++ G+  D ++++     +        ++  + ++ + +      G   TE +++
Sbjct: 440 LIRLYESDGVTPDYLKEMKVISDIPSTFYSKLSELHQSKKQKEQDQLSLAGLPGTELLYY 499

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                             G    + D KVL             S  K +V          
Sbjct: 500 ------------------GDDPKEFDAKVL------------KSFDKYVV---------- 519

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                    D+T FYA  GGQ  D G         ++ DV K    + VH   ++ GI +
Sbjct: 520 --------LDKTSFYARGGGQEPDHGTIEN----FEVVDVSKHG-NVIVHE--LKNGIPK 564

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ++ + R  ++ NH++TH+L+ +  ++LGS V Q+ +    D  R D+TH   
Sbjct: 565 EGSTVSCVVNSKRRDDITKNHTSTHILNSSSRSVLGSWVWQHSAFKEEDHARLDITHHSA 624

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +T  E+  IED  N ++ +N+PV     +R  A       +   G      +R+VS+  E
Sbjct: 625 LTDDEITKIEDLANSVVEKNIPVTIENFDRGTAEQKYGFKIYQGGIVPVKSIRIVSI--E 682

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D  + +   CGGTHV  T EI L+ I     I+ G+ RIE ++G  A  ++   D  L  
Sbjct: 683 DFDIEA---CGGTHVKQTDEIELIKITRTKRIQDGVVRIEFVSGDTALDYVKRHDADLIK 739

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            +S LK        + E   +E R+ Q    + K  L VE++   KI      S I+ E+
Sbjct: 740 KSSELK-------DKTE--LKEKRREQKQELREKFPLLVENIIQSKIG-----SAIVDEI 785

Query: 805 ---------------DSKELKSVMD-ALQKKI--QSGIIMLVGISKEKKASVLIVVTEDL 846
                          DS +        L +K+  +   ++  G+ ++      I+ + D 
Sbjct: 786 VVDITESGKPNFCCTDSDQYDEFFHIGLGEKLIEKDPWMVYCGVFEDGDKIRAIIYSGDQ 845

Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +   A D+A++ +++LGG GGG +   AQ GG + +K + AI  V S +
Sbjct: 846 AGKDKKAGDIAKIVSEILGGAGGGTQ-RFAQGGGKDKSKKNDAIEKVKSMV 895


>gi|259015939|gb|ACV89252.1| alanyl-tRNA synthetase [Heliothis virescens]
          Length = 232

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/236 (39%), Positives = 136/236 (57%), Gaps = 25/236 (10%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEM+GN+SFG YFK+     AW+LLT+ + L   RLY+T +        + D E  
Sbjct: 2   HHTFFEMMGNWSFGDYFKKEICGWAWELLTEVYKLSGDRLYVTYFGGDASSGLEPDLECK 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEG 194
           ++W K+ G+    I+  +  DNFW M ETGPCGPCSE+ +D+     GG   +   + + 
Sbjct: 62  EIWLKL-GVPESHILPGSMKDNFWEMGETGPCGPCSELHYDR----IGGRDAAHLVNMDD 116

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
              +EIWNLVF+QF ++      +LPK  ID G+GLER+ +V+Q K  NYD D F  + +
Sbjct: 117 PDVLEIWNLVFIQFNRETDGSLKLLPKKHIDCGLGLERLVSVIQNKRANYDTDFFMPIFK 176

Query: 255 ASEQVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           A E  TG +     +         + +RV+ DH R+ +  ++DG  P N GRGYV+
Sbjct: 177 AIEIGTGARPYSGKVGSDDVDGIDMAYRVLADHARTLTIALSDGGCPDNTGRGYVV 232


>gi|222636774|gb|EEE66906.1| hypothetical protein OsJ_23751 [Oryza sativa Japonica Group]
          Length = 1329

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 188/369 (50%), Gaps = 40/369 (10%)

Query: 15  FQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKH 74
           F+   H     S+++   D  L+F ++ M  F  +          A  +   C     K 
Sbjct: 12  FESKAHTRCSPSTILAVKDSPLLFADAEMNQFMPVLLDT-----AAQGSQLGCPGHACKS 66

Query: 75  NDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
                V   +RH TF E+LGN+SFG YFKE AI  AW+LLTK ++L+  R+++T +  DE
Sbjct: 67  LRCIPVAVDDRHLTFTEVLGNWSFGDYFKEEAIGFAWELLTKVYELEVDRIFVTYFGGDE 126

Query: 135 --------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECIPG 185
                   E+  +W K   L +DK++ +    NF+   +TGPCGPCS+I+FDQ G     
Sbjct: 127 KSGLAPDLESKHIWLKY--LPSDKVLPLVNKGNFYQNGDTGPCGPCSQIYFDQIGHHDVA 184

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS---IDTGMGLERMATVLQEKTN 242
            L  + + G   IEIWNLVF QF   NK+   IL   S   + TG+  E++ ++LQ+K +
Sbjct: 185 SLLNNDDPG--CIEIWNLVFFQF---NKEAGGILMPSSAKHVGTGLNFEQLTSILQKKKS 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYE------GNNIVN-----HRVIVDHLRSSSFLIADGIL 291
            +D D+    I +  Q TG + +      G + +N     +R++ DH+R+SSF IADG  
Sbjct: 240 KFDTDILMPTIDSIRQCTGNEIQPYSGKFGPDDINEVDLAYRIVADHIRTSSFAIADGSQ 299

Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           P  E    + R ++RRA+ +  + L   +  +  L+ A    M   +PEL+  +  I++ 
Sbjct: 300 PGIE----IARNMLRRAIYFGHQNLKAKQRFLTILVSAFIESMSGDFPELLHNEKKIKDI 355

Query: 351 LRSEDERFG 359
           +  E+  F 
Sbjct: 356 IAEEEITFA 364


>gi|262301325|gb|ACY43255.1| ala-tRNA synthetase [Argulus sp. Arg2]
          Length = 235

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 144/239 (60%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSEI FD+     GG   ++   ++    +EIWNLVF+QF +++     +LPK
Sbjct: 1   DTGPCGPCSEIHFDR----IGGRNAAALVNQDDPDVLEIWNLVFIQFNRESDGSLHLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +V+Q+K +NYD D F  L +A +Q TG + Y+G   V+        +
Sbjct: 57  KHIDCGLGLERLVSVIQKKXSNYDTDAFTPLFKAIQQKTGCREYQGKVGVDDIGGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RVI DH+R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L      +  L+P +  
Sbjct: 117 RVIADHVRTLTIALADGGRPDNSGRGYVLRRILRRAVRYATEKLNAKSGTLSSLIPVVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I+  +  E+ +F KTL RG  LL   +S LGK  +  GD+A++L
Sbjct: 177 SLGDVFPEIKRGVDDIKNIIDEEETQFLKTLSRGHRLLSAQVSKLGKGSLFPGDIAWRL 235


>gi|2654772|gb|AAC32529.1| alanyl-tRNA synthase [Mycoplasma hyopneumoniae]
          Length = 186

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/178 (44%), Positives = 118/178 (66%), Gaps = 6/178 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANEIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSKKTNFWDLGQ-GPCGPCSEIYFDRG 176


>gi|218508118|ref|ZP_03505996.1| alanyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 177

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 24/201 (11%)

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I ETL+ E+ RF KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L 
Sbjct: 1   ISETLKLEENRFRKTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALR 60

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           AR + G+DI  F  A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD     
Sbjct: 61  AREI-GVDISGFTDAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD----- 114

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                             T     +V+AIV+ G + E A +G KV+VV +QTPFY E+GG
Sbjct: 115 ------------------TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGG 156

Query: 527 QLGDTGCAIGDGIRLQITDVQ 547
           Q+GDTG    D  +++I D Q
Sbjct: 157 QMGDTGVISSDHGKIEIFDTQ 177


>gi|254574770|pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain In Lysine-Methylated Form
 gi|254574771|pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain In Lysine-Methylated Form
          Length = 752

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 191/792 (24%), Positives = 332/792 (41%), Gaps = 174/792 (21%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKN-IFTGQEKP 56
            +  +R  FL FF+   HE+ P        ++P     ++   + ++ F+  + +G+  P
Sbjct: 58  TLDEMREXFLRFFEX--HEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADP 115

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAW 111
               +   Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA+
Sbjct: 116 PANPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAF 171

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +  TKE  +           ED                    IT  +N W  A  G  GP
Sbjct: 172 EFFTKELXMXP---------ED--------------------ITFKENPW--AGGGNAGP 200

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-----------ERFI-L 219
             E+ +                  R +E+  LVFMQ+    +            E++I +
Sbjct: 201 AFEVLY------------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPM 242

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV--- 274
               +DTG GLER+  + Q     YD  +  ++++    + G++     I+  N R+   
Sbjct: 243 ETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGM 301

Query: 275 ---------------------------------------IVDHLRSSSFLIADGILPANE 295
                                                  I DH ++ +F++ADG++P+N 
Sbjct: 302 FDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNV 361

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E+
Sbjct: 362 XAGYLARLLIRKSIRHLRELGLEVPLS-EIVALHIXELHKTFPEFXEMEDIILEMIELEE 420

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           + + +TL RG  L+   ++ L K  I  +  +     Y++HGL  +I+ +I    G+   
Sbjct: 421 KXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVN 480

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
              +F   + ++  R                    KE+ G  + + ++LL   K + + R
Sbjct: 481 IPDNFYSMVAKEAERT-------------------KEEKGE-ELVDFELL---KDLPDTR 517

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           ++  + P +   +  + +++ I                 V+ D T FY E GGQ  DTG 
Sbjct: 518 RLYYEDPFMXEFD--AXVLRVIXDW--------------VILDATAFYPEGGGQPYDTGV 561

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            I +G  + +T+VQ    G  + H + + G     M +   ID+  R Q   +H+ TH+L
Sbjct: 562 LIVNGREVXVTNVQXV--GXVIIHXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVL 619

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS +T D  R D++H   I+  EL  IE   N I+ ++  V    
Sbjct: 620 MGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEW 679

Query: 654 MNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + R  A       L   G      +RVV +  ED  V +    GGTH+ STG +  + I+
Sbjct: 680 LPRTTAEQXYGFRLYQGGVVPGREIRVVXI--EDWDVQAX---GGTHLPSTGLVGPIXIL 734

Query: 712 SESSIRAGIRRI 723
               I+ G+ RI
Sbjct: 735 RTERIQDGVERI 746


>gi|167043875|gb|ABZ08564.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_APKG3E18]
          Length = 898

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 231/947 (24%), Positives = 389/947 (41%), Gaps = 197/947 (20%)

Query: 14  FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAVTTVQKCVRA 70
           FF KNGH  +    ++      L FT + +V F+ +   +   E P    V   Q C+R 
Sbjct: 82  FFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVP-QTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  I L + L+T++F +D++ +  
Sbjct: 140 ---FKDLENVGITGRHFSSFCMIGQHSIPNSHGYWKDECIDLDYRLVTEQFGVDKKEV-- 194

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
            V+ ED     +W                        E G     S  FF +G       
Sbjct: 195 -VFVED-----VW------------------------EGGGSFGSSLEFFVKG------- 217

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD-- 245
                     +E+ N VF +F Q +      L +  ID G GLER A +       YD  
Sbjct: 218 ----------LELGNAVFTEF-QGDLSNYKTLDQQIIDMGAGLERFAWLTMGTPTAYDCC 266

Query: 246 -------------ID------------LFKHLIQASE---------QVTGMKYEGNN--- 268
                        ID            + KHL + S+         +  G+  E  N   
Sbjct: 267 FGPITNNLLQQAGIDKNDELLVTYFTKIAKHLERFSDLSEVRKNAIKSAGLSDEQMNKII 326

Query: 269 --IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
             +    +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L      M  ++
Sbjct: 327 IPVEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKLD-MNEIV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
            A    + + YPEL + +  ++  +  E  R+  +  R    ++ ++S L +   +  D 
Sbjct: 386 DAQIDYLKNTYPELEKTREDVKTIIGIESGRYENSKLR----MEKIVSKLNQKPTV--DD 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LY++ G+  D ++++     +        +Q  + ++ + +      G   TE +++
Sbjct: 440 LIRLYESDGVTPDYLKEMKVISDIPSTFYSKLSQLHQSKKQKEQDQVSLEGLPETELLYY 499

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                             G    + D K+L             S  K +           
Sbjct: 500 ------------------GDDPKEFDAKIL------------KSFDKYV----------- 518

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                  V D+T FYA  GGQ  D G  IG   + ++ DV K    I VH   ++ GI +
Sbjct: 519 -------VLDKTSFYARGGGQEPDHG-TIG---KFEVVDVSKHG-NIIVHE--LKNGIPK 564

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ++ + R  ++ NH++TH+L+ +   +LGS V Q+ +    D  R D+TH   
Sbjct: 565 EGNTVSCVVNSKRRDGITKNHTSTHILNSSSRNVLGSWVWQHSAFKEEDHARLDITHHSA 624

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +T  E+  IE   N  + +N+PV     +R  A       +   G      +R+VS+  E
Sbjct: 625 LTDDEITKIEKLANSAVEKNMPVTIENFDRGTAEQKYGFKIYQGGIVPVKSIRIVSI--E 682

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D  + +   CGGTHV  TGEI L+ I     I+ G+ RIE ++G  A  ++   D+ L  
Sbjct: 683 DFDIEA---CGGTHVKKTGEIELIKITRTKRIQDGVVRIEFVSGGTAIDYVKQHDDDLIK 739

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            +  LK        + E   +E R+ Q    + K  + VE ++  KI   + +  II ++
Sbjct: 740 KSVELK-------DKTE--LKEKRQEQKQELREKFPILVESITQSKIG-TSIVDEIIVDI 789

Query: 805 DSKELKSVMDAL-------------QKKIQSGIIML-VGISKE-KKASVLIVVTEDLLDR 849
                 +    +             +K I+    M+  G+ ++  K   +I   +     
Sbjct: 790 TESGKPNFCCTISDQYGEFFHISFGEKLIEKDPWMVYCGVFEDGDKIRAIIYSGDQAAKD 849

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A  +A++ ++VLGG GGG +   AQ GG + +K + AI  V S +
Sbjct: 850 KKAGYIAKIVSEVLGGAGGGNQ-RFAQGGGKDKSKKNDAIEKVKSMV 895


>gi|259015953|gb|ACV89259.1| alanyl-tRNA synthetase [Bittacidae sp. BMW-2009]
          Length = 235

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/233 (42%), Positives = 135/233 (57%), Gaps = 23/233 (9%)

Query: 99  GGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADK 150
           G YFK      AW+LLT  F L   RLY+T +        + DEE   +W K+ G+ A  
Sbjct: 1   GDYFKTEICSWAWELLTHVFKLPADRLYVTYFGGDAASGLEPDEECKNIWLKL-GVPATH 59

Query: 151 IIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQF 208
           ++     DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF+Q+
Sbjct: 60  VLPGNMKDNFWEMGETGPCGPCSELHFDRIGGRDVPELV---NMDDPDVLEIWNLVFIQY 116

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG- 266
            +++     +LPK  ID G+G ER+ +V+Q K  NYD DLF  L  A +  TG   Y+G 
Sbjct: 117 NRESDGSLKLLPKKHIDCGLGFERLVSVIQNKRANYDTDLFIPLFDAIQNGTGAPPYQGR 176

Query: 267 ------NNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                 + I + +RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA
Sbjct: 177 VGAEDSDGIDMAYRVLADHARTITIALADGGHPDNTGRGYVLRRILRRAVRYA 229


>gi|262301355|gb|ACY43270.1| ala-tRNA synthetase [Heterometrus spinifer]
          Length = 235

 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 142/239 (59%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG       + +    +EIWNLVF+QF ++N      LPK
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRDAKHLVNADVPDVLEIWNLVFIQFNRENDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             +DTGMGLER+ +V+Q+K++NYD DLF  +  A ++ T  + YEG   V+        +
Sbjct: 57  KHVDTGMGLERLVSVIQDKSSNYDTDLFVPIFDAIQKATSARPYEGKVGVDDKDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   LG        L+P +  
Sbjct: 117 RVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYATEKLGAKPGAFASLVPVVID 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL      I + +  E+ +F KTL RG  LL+  +  LG +++L G+VA++L
Sbjct: 177 ILGEIFPELKTDPQTIIDIITDEEAQFLKTLSRGQRLLERTIDKLGSEKVLPGEVAWRL 235


>gi|262301323|gb|ACY43254.1| ala-tRNA synthetase [Abacion magnum]
          Length = 235

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 142/237 (59%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPC+EI FD+ GE      P  + +    +EIWNLVF+QF ++N     +LPK  
Sbjct: 1   ETGPCGPCTEIHFDRIGER--NAAPLVNADVPDVLEIWNLVFIQFNRENDGSLRVLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           +DTGMGLER+ +V+Q K +NYD DLF  +  A ++ TG K  G  +         + +RV
Sbjct: 59  VDTGMGLERVVSVIQCKQSNYDTDLFLPIFDAVQKATGTKPYGALVGAEDADGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P L+  L+  +   +
Sbjct: 119 VADHARTLTIALSDGGRPDNTGRGYVLRRILRRGVRYAHEKLNAKPGLLADLVDVVVQIL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G+ +PEL +    +++ +  E+ +F KTL RG  LL+  +  LG   +L GD+A++L
Sbjct: 179 GTTFPELRKDPQSVKDVINEEETQFLKTLSRGQRLLERTVLKLGDQRVLPGDIAWRL 235


>gi|16081904|ref|NP_394309.1| alanyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|22096203|sp|Q9HJW4|SYA_THEAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10640126|emb|CAC11978.1| alanyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 871

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 204/832 (24%), Positives = 343/832 (41%), Gaps = 168/832 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61
           ++S +R  F++FF+K GH+ L    ++P     ++  N+ +  F+ ++ +G  +P    +
Sbjct: 61  SLSEMRDAFIKFFEKRGHKFLKPYPVVPRWREDVLLVNASIYDFQPHVTSGIVRPPGNPI 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + SF       Y+KE  +   +D LT+
Sbjct: 121 VMSQPSIRM----NDVDLVGITGRHLTSFEMLCHDSFNTKDKTVYWKEETVHYCYDFLTE 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                       GL  D  + I+  +  WS    G  G   E+F
Sbjct: 177 ----------------------------GLGIDGKL-ISFKEKPWSGG--GNAGNALEVF 205

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMS---IDTGMG 229
                              R +E+  LVFM  ++       I      KM    +DTG G
Sbjct: 206 V------------------RGLEVATLVFMDMKEDPNGPYEIDGIRYSKMDMRIVDTGYG 247

Query: 230 LERMATVLQEKTNNYDI---DLFKHLIQASE---------------QVTGMKYEGNNIVN 271
           LER+  + Q     Y     D+ +H+++ S                 V    YE + +++
Sbjct: 248 LERLTWLSQGTPTVYQAIYPDIIQHVMKNSSVSDIDEEFLSEVVKASVMKEPYEESFVIS 307

Query: 272 HR---------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                                  +++DH RS   + A  ++P+N   GY+ R ++RRA  
Sbjct: 308 QLEKRYPDARQRFEEIKKVRDVFLMIDHARSLMHMFAAYVIPSNVKVGYLARMLIRRAYR 367

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
                GY   LM  L+     ++    P+  +    + + L  E+E++      G  ++D
Sbjct: 368 AISNTGYRGSLM-DLIRMNHEDLKDIVPDFPEQ--FVSDVLSIEEEKYRDVERHGTQIID 424

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
            ++S+ GK   L+ D    LYD+HG+  + ++  L  +G+  ID+     A+  +R    
Sbjct: 425 KMISNKGK---LSLDDLVLLYDSHGISPETVKAYLETKGME-IDVPDNFHAIVIKRHE-- 478

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                   G TEK  +S   +   T+ + YD      FM+E                 + 
Sbjct: 479 -------KGETEKKKYSDYPEI-ETRTLYYD----DPFMRE----------------FTG 510

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
           +V  +  +G            E++ D+T FY E GGQ  D G     G R+ +  V+K  
Sbjct: 511 LV--LFSKGN-----------EIILDKTAFYPEGGGQPWDLGYFEYKGKRINVVAVRKYG 557

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + I   H +   G +   + +   ID++ R +L ++H++THLL   L  +LG HV QNG 
Sbjct: 558 KTIV--HTL--DGEIPQGVRVHGVIDWERRSRLMVHHTSTHLLLGVLREVLGEHVWQNGV 613

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
               +  R D+TH + I    ++ IE+ V D+I +   V  R ++   AI      L   
Sbjct: 614 QKDVEESRLDITHYRKIDEETIRKIEERVFDLIREGREVSVRNLDWYSAIDKYGFRLFEG 673

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G     ++RVV ++    GV +   CGGTH+ +   I +L I    +I+  I RI    G
Sbjct: 674 GVPLTPKIRVVEIQ----GVDAEG-CGGTHLKNISSIGVLKIRKVEAIQENIYRITFSAG 728

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778
             A        E    +++ LK     +   V E+ + Y  L+  L  A+R+
Sbjct: 729 VPALHLFQESYEASYGISTLLKKPIEEIAQSVSELSKGYADLRRSLAEARRR 780


>gi|218661202|ref|ZP_03517132.1| alanyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 113

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/103 (73%), Positives = 87/103 (84%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK 103
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YF+
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFR 103


>gi|262301347|gb|ACY43266.1| ala-tRNA synthetase [Euperipatoides rowelli]
          Length = 235

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 141/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSEI FD+     GG   S   + +    +EIWNLVF+QF ++N     +LPK
Sbjct: 1   DTGPCGPCSEIHFDR----IGGRDASHLVNMDDPNVLEIWNLVFIQFNRENDGVLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNH 272
             ID GMG ER+ +V+Q KT+NYD D+F  L +A ++ TG + YEG           + +
Sbjct: 57  KHIDCGMGFERLISVVQNKTSNYDTDVFMPLFEAIQKGTGARPYEGKVGSDDVDGTDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L  T      L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNATPNFFASLVNVVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G A+PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG   IL GD+A++L
Sbjct: 177 LLGDAFPELKKDPQMVMDIINEEESQFLKTLTRGRRLLERTICKLGTSSILPGDLAWRL 235


>gi|262301401|gb|ACY43293.1| ala-tRNA synthetase [Stenochrus portoricensis]
          Length = 235

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 140/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSEI FD+     GG    +    +    +EIWNLVF+QF ++N      LPK
Sbjct: 1   DTGPCGPCSEIHFDR----LGGRDAKNLVNADVPDVLEIWNLVFIQFNRENDGTLMSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             +DTGMGLER+ +V+Q  ++NYD DLF  +  A ++ TG+K     +         + +
Sbjct: 57  KHVDTGMGLERLVSVIQNHSSNYDTDLFVPIFDAIQKSTGVKSYSGKVGQEDIDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L     +   L+P +  
Sbjct: 117 RVLADHVRTLAIALSDGGRPDNTGRGYVLRRILRRAVRYTIEKLNGKPGVFASLVPVVVN 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL + +  + + +  E+ +F KTL RG  LL   ++ LG  +IL GDVA++L
Sbjct: 177 LLGDIFPELKKDQQTVMDIINDEESQFLKTLSRGHRLLQRTINKLGDQKILPGDVAWRL 235


>gi|157813824|gb|ABV81657.1| putative AATS-ALA protein [Limulus polyphemus]
          Length = 235

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 149/237 (62%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSEI +D+ G+     L   + +    +EIWNLVF+QF ++N     +LPK  
Sbjct: 1   ETGPCGPCSEIHYDRIGDRDAKHL--VNADVPDVLEIWNLVFIQFNRENDGTLRMLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRV 274
           IDTGMGLER+ +V+Q+K++NYD DLF  +  A ++VTG + Y+G       + I + +RV
Sbjct: 59  IDTGMGLERLVSVIQQKSSNYDTDLFVPIFDAIQKVTGTRPYQGKVGSDDEDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH+R+ +  ++DG  P N GRGYVLRRI+RR + +A      +P +   L+P +   +
Sbjct: 119 LADHVRTLTVSLSDGGRPDNTGRGYVLRRILRRGVRFATEKLNAKPGVFAGLVPVVIDIL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PEL +   ++ + +  E+ +F KTL RG  LL+  ++ LG  + L GDVA++L
Sbjct: 179 GDVFPELRKDPQMVMDIINEEESQFLKTLTRGHRLLERTINKLGNVKTLPGDVAWRL 235


>gi|262301361|gb|ACY43273.1| ala-tRNA synthetase [Libinia emarginata]
          Length = 237

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 148/239 (61%), Gaps = 15/239 (6%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSEI FD+ G      L   +E+    +EIWNLVFMQF ++       LPK  
Sbjct: 1   ETGPCGPCSEIHFDRIGNRDAAHL--VNEDDPDVLEIWNLVFMQFNREADNTLRTLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNHRV 274
           ID GMGLER+ ++LQ KT+NYD DLF  + +A ++VTG + Y+G           + +RV
Sbjct: 59  IDCGMGLERLVSILQGKTSNYDTDLFTPIFEAIQKVTGCQPYKGRVGAADTDGVDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEM 333
           + DHLR+ +  ++DG +P N GRGYVLRRI+RRA+ Y A  LG    ++  L+  +   +
Sbjct: 119 VADHLRTLTVALSDGGMPDNTGRGYVLRRILRRAVRYAAEKLGMKPGVLSSLIGVVVELL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390
           G A+PE+ +   +I + +  E+ +F +TL+RG  +L+  +  LGK    ++ G+VA++L
Sbjct: 179 GKAFPEVTRDPQMICDVIDEEERQFLRTLERGHRVLERAVHRLGKAGGGMVPGEVAWRL 237


>gi|262301399|gb|ACY43292.1| ala-tRNA synthetase [Scolopendra polymorpha]
          Length = 235

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 141/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG   S+    +    +EIWNLVF+QF ++N  E  ILPK
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRDASALVNIDDPDVLEIWNLVFIQFNRENDGELKILPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID GMG ER+ +V+Q+KT+NYD D+F  +  A ++ TG +  G ++         + +
Sbjct: 57  KHIDCGMGFERLTSVIQQKTSNYDTDIFVPIFDAIQKGTGQRPYGGSVGSADSDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAKSGFFSTLIDVVIE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +   ++++ +  E+ +F KTL RG  LL   ++ L    +L GD+A++L
Sbjct: 177 TLGDTFPEVKKDPQMVKDIINEEEIQFLKTLTRGQRLLQRTINKLNGQSVLPGDIAWRL 235


>gi|262301395|gb|ACY43290.1| ala-tRNA synthetase [Scutigerella sp. 'Scu3']
          Length = 235

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 140/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG       + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDAKHLVNADVPDVLEIWNLVFIQFNREADGSLLPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID GMGLER+ +V+Q K++NYD DLF+ L +A E+ TG +     +         + +
Sbjct: 57  KHIDCGMGLERLVSVVQNKSSNYDTDLFQALFEAVEKGTGSRPYTGKVGPEDADGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P  +  L+  + T
Sbjct: 117 RVLADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAKPGFIASLVDVVVT 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL +    +++ +  E+ +F KTL RG  LL+  ++ +G    L GDVA++L
Sbjct: 177 LLGDTFPELNKDPQTVKDIINDEEVQFLKTLSRGQKLLERTIAKMGDTRTLPGDVAWRL 235


>gi|305663561|ref|YP_003859849.1| alanyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378130|gb|ADM27969.1| alanyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 914

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 190/822 (23%), Positives = 344/822 (41%), Gaps = 157/822 (19%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVTTVQ 65
           +R  FL+FF+++GHE++    ++      L  T + +V F+ ++ +G   P    +   Q
Sbjct: 64  VRDLFLKFFERHGHEIIEPRPVVARWREDLYLTIASIVVFQPHVTSGLVPPPANPLVIAQ 123

Query: 66  KCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
            C+R      D+D+VG T  RH T F M G+ +F       Y+ +  ++ A +   +E  
Sbjct: 124 PCIRL----EDIDSVGYTLGRHMTNFIMGGHHAFNYPDKHIYWTDETVEYAREFFVEELG 179

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + +           EE                  IT  +++W     G  GPC E+    
Sbjct: 180 IPE-----------EE------------------ITFKESWWEGG--GNAGPCFEVAV-- 206

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFILPKMSIDTGMGLERMATVL 237
                GGL           E+  LVFM +   +   +E   +P   +DTG G+ER+A  +
Sbjct: 207 -----GGL-----------ELATLVFMMYRVSEGGYEE---IPLKIVDTGYGIERIAWFV 247

Query: 238 QEKTNNY--------------------DIDLFKHLIQASEQVTGMKYEG----------- 266
           Q+    +                    D D+   + + + ++    Y             
Sbjct: 248 QKTPTAFHAVYGSLLTDFHKKLNISEPDRDILYAVARRAARIDPSNYSSILAIYEDISRS 307

Query: 267 ------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
                        NI +   I+DH ++ + +++DGI+P+N G GY+ R ++RR++     
Sbjct: 308 MGVSVKEIEDQLKNIFDLYAILDHTKTIALMLSDGIVPSNSGEGYLARLVIRRSLRKLAK 367

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           L   +  +  L+       G  YP +I+ +  I E +R E++++     RG++     ++
Sbjct: 368 LN-VDIDLSELVSMQLGYWGDMYPRMIRYRDTILEMVRLEEDKY-----RGVISKLSTIA 421

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS-FNQALEEQRSRARAHS 433
               ++  + D    LYD+ G+P D++ + L  R    I++ S F   +  + SR +   
Sbjct: 422 PRYVNKSPSLDELVTLYDSQGIPPDLLAEELDKRFSYRINVPSNFYSIVASRHSRPK--- 478

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                        +++E     + +  D++       E R++  + P          + +
Sbjct: 479 -------------TVREY--EKEELPRDVVERVSSFPETRRIFHEDP-------YRRVFR 516

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A V         V G +  +V D T FY E GGQLGD G    +G  + +   +K    +
Sbjct: 517 AKVL-------GVIGDRY-IVLDATAFYPEGGGQLGDRGILRVNGKTINVVSTKKIGNVV 568

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                 VE GI  + M +   +D+  R +   +H+ATH+L  AL  +LG HV Q G+  T
Sbjct: 569 VHVVDSVE-GI-SSGMEVDGEVDWGIRYRRMRHHTATHILLGALRRVLGDHVWQAGAEKT 626

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
               R DVTH K  +  E++ IE   N ++ + + V    + R +A       L   G  
Sbjct: 627 EFKARLDVTHYKMPSEDEIRRIEYLANRVVDEAIDVKIHYLPRNEAEKIYGFTLYQGGVP 686

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +RVV +   D     +  C GTHV +T E+  + I++   I  G+ R E +     
Sbjct: 687 MEPTIRVVEIPGWD-----AQACFGTHVRNTSEVGGIKIINIDRIADGVIRFEYVVATAL 741

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             +    ++KLKS+A  +  S  ++  R+E + +E    +++
Sbjct: 742 ADYARSFEDKLKSMAKSVGSSVDDIDKRIETLVKEMNNYRML 783


>gi|259015933|gb|ACV89249.1| alanyl-tRNA synthetase [Kempynus sp. BMW-2009]
          Length = 226

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 131/228 (57%), Gaps = 23/228 (10%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEMLGN+SFG YFK+     AW+ LT+ F L   +LY+T +        + DEE  
Sbjct: 2   HHTFFEMLGNWSFGDYFKQEICTWAWEFLTEVFHLPPDQLYVTYFGGHPASGLEPDEECK 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGE 195
            +W K+ G+    ++  +  DNFW M ETGPCGPCSE+ FD+     +P  +   + +  
Sbjct: 62  NIWIKL-GVPESHVLPGSMKDNFWEMGETGPCGPCSELHFDRIGNRDVPHLV---NMDDP 117

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
             +EIWNLVF+QF +++     +LPK  ID G+G ER+ +V+Q K  NYD DLF  L  A
Sbjct: 118 DVLEIWNLVFIQFNRESDSSLKLLPKKHIDCGLGFERLVSVIQGKRANYDTDLFMPLFAA 177

Query: 256 SEQVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPAN 294
            ++ TG++     +         + +RV+ DH R+ +  ++DG  P N
Sbjct: 178 IQKGTGIREYSGQVGDADSDGIDMAYRVLADHARTLTISLSDGGRPDN 225


>gi|259015935|gb|ACV89250.1| alanyl-tRNA synthetase [Platystoechotes sp. BMW-2009]
          Length = 226

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/227 (42%), Positives = 135/227 (59%), Gaps = 21/227 (9%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEMLGN+SFG YFK+     AW+LLT+ F L    LY+T +        + D E  
Sbjct: 2   HHTFFEMLGNWSFGDYFKKEICTWAWELLTQVFKLPADNLYVTYFGGHEASGLEPDLECK 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGER 196
            +W K+ G+    I+  +  DNFW M ETGPCGPCSE+ FD+ G      L   + +   
Sbjct: 62  NIWLKL-GVLEHHILPGSMKDNFWEMGETGPCGPCSELHFDRIGNRDAAHL--VNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+GLER+ +V+Q K  NYD DLF  L +A 
Sbjct: 119 VLEIWNLVFIQFNRESDGSLKLLPKKHIDCGLGLERLVSVIQGKRANYDTDLFTSLFEAI 178

Query: 257 EQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLIADGILPAN 294
           ++ TG++ Y+G       + I + +RV+ DH R+ +  +ADG  P N
Sbjct: 179 QKGTGIREYQGKIGDADKDGIDMAYRVLGDHARTLTIALADGGRPDN 225


>gi|262301335|gb|ACY43260.1| ala-tRNA synthetase [Carcinoscorpius rotundicauda]
          Length = 235

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 147/240 (61%), Gaps = 19/240 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG       + +    +EIWNLVF+QF ++N     +LPK
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRDAKHLVNADVPDVLEIWNLVFIQFNRENDGTLKMLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNH-------- 272
             +DTGMGLER+ +V+Q K++NYD DLF  + +A ++VTG + YEG  I +H        
Sbjct: 57  KHVDTGMGLERLVSVIQGKSSNYDTDLFVPIFEAIQKVTGSRPYEG-KIGSHDEGGIDMA 115

Query: 273 -RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALC 330
            RV+ DH+R+ +  ++DG  P + GRGYVLRRI+RR + +A      +P +   ++P + 
Sbjct: 116 YRVLADHVRTLTVSLSDGGRPDSTGRGYVLRRILRRGVRFATEKLNAKPGVFAGIVPTVV 175

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +G  +PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG  ++L GDVA++L
Sbjct: 176 NILGDVFPELRKDPQMVMDIINEEESQFLKTLTRGRRLLERTILKLGNIKMLPGDVAWRL 235


>gi|262301391|gb|ACY43288.1| ala-tRNA synthetase [Prokoenenia wheeleri]
          Length = 235

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 146/242 (60%), Gaps = 23/242 (9%)

Query: 165 ETGPCGPCSEIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI 218
           +TGPCGPCSEI +D+       E +   +P         +EIWNLVF+QF +++      
Sbjct: 1   DTGPCGPCSEIHYDRIGGRDAKELVNADVPD-------VLEIWNLVFIQFNRESDGSLKP 53

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNIVN--- 271
           LPK  +DTGMGLER+ +V+Q K +NYD D+F  + +A ++ TG      + G+  V+   
Sbjct: 54  LPKKHVDTGMGLERLVSVIQNKPSNYDTDIFVPIFEAIQKATGCPPYSGFVGSEDVSGVD 113

Query: 272 --HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPA 328
             +RV+ DH+R+ +  ++DG  P + GRGYVLRRI+RRA+ YA      +P L+  L+P 
Sbjct: 114 MAYRVVADHIRTLTIALSDGGHPDSTGRGYVLRRILRRAVRYATEKLNAKPGLLSSLIPI 173

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           + + +G  +PEL +    +++ +  E+++F KTL RG  L +  ++ +G  + L GDVA+
Sbjct: 174 VISILGETFPELSKDPESVKDIIEEEEKQFLKTLSRGKRLFERTINKMGDQKYLPGDVAW 233

Query: 389 KL 390
           +L
Sbjct: 234 RL 235


>gi|262301369|gb|ACY43277.1| ala-tRNA synthetase [Loxothylacus texanus]
          Length = 235

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 140/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPC+EI FD+     GG   +   +++    +EIWNLVF+QF +++      LP+
Sbjct: 1   DTGPCGPCTEIHFDR----EGGRNAAHLVNQDDPNVVEIWNLVFIQFNRESDGSLRTLPR 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             +DTGMGLER+ ++LQ K +NYD DLF+ +     Q+TG++ Y G   V         +
Sbjct: 57  QHVDTGMGLERLVSILQNKMSNYDTDLFQPIFSKITQLTGVRQYTGKVGVEDKDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P +   L+P +  
Sbjct: 117 RVLADHVRTLTIALSDGGRPDNVGRGYVLRRILRRGVRYASEKFAAKPGVFAALVPTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL +    + + +  E+ +F KTL RG  LL+  +S L     + GDV ++L
Sbjct: 177 ILGDTFPELRKDPDTVMDIINEEEVQFLKTLKRGRSLLERAISRLANTTTVPGDVVWRL 235


>gi|262301329|gb|ACY43257.1| ala-tRNA synthetase [Armadillidium vulgare]
          Length = 235

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           +TGPCGPCSEI FD+ G      L   +++    +EIWNLVF+QF ++N      LPK  
Sbjct: 1   DTGPCGPCSEIHFDRIGNRNASTL--VNQDDPNVLEIWNLVFIQFNRENDGSLKSLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ ++LQ K +NYD DLF  L  A +  TG++     +         + +RV
Sbjct: 59  IDCGLGLERLVSILQNKNSNYDTDLFTPLFNAIQNKTGIRPYTGKVGDEDIDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG LP N GRGYVLRRI+RR + +A      +P +   L+  +   +
Sbjct: 119 VADHARTLTIXLSDGGLPDNTGRGYVLRRILRRGVRFAAEKLKAKPSIFASLIDDVVITL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
              +PE+ +    I++T+  E+++F KTLDRG  LL+  +  LG    + GDVA++L
Sbjct: 179 KDIFPEVSKDVDYIKDTINEEEQQFLKTLDRGHKLLERTIHKLGXSNNIPGDVAWRL 235


>gi|254470257|ref|ZP_05083661.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960568|gb|EEA95764.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 284

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/266 (39%), Positives = 162/266 (60%), Gaps = 11/266 (4%)

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--- 683
           +++ E   +E   N+I+ QN  V T +M  ++AI +GA AL G KY D VRVVS+     
Sbjct: 1   MSAEETTKVEALANEIVLQNGAVETSLMEVDEAIEAGAMALFGEKYGDEVRVVSMGTATT 60

Query: 684 --EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             + G  +S  LCGGTHV  TG+I L+ +VSE ++ AG+RRIEA+TG  AR +L  QD  
Sbjct: 61  GEKAGKSYSVELCGGTHVKRTGDIGLVTVVSEGAVAAGVRRIEALTGDEARKYLAEQDAL 120

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLS----CHKIADVN 795
           ++  A  LKVS  +V  R+  + +E +KL+  L  AK+KL +            +     
Sbjct: 121 MRETAGLLKVSAADVPARIAGLLDERKKLERELAEAKKKLAMGGGGSGGDAGVTEAGKFK 180

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            M+ ++  ++ K+LKSV D  +  I SG+++L+  +++ KA++++  T+D+ +  +AVDL
Sbjct: 181 LMARVLEGINPKDLKSVADEGKTAIGSGVVVLISKAEDGKAAIVVGSTKDVSETASAVDL 240

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPN 881
            R+ +  LGG GGGGRP MAQ+GGP+
Sbjct: 241 VRIGSAALGGRGGGGRPDMAQAGGPD 266


>gi|167042980|gb|ABZ07693.1| putative tRNA synthetases class II (A) [uncultured marine
           microorganism HF4000_ANIW137P11]
          Length = 961

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 225/955 (23%), Positives = 405/955 (42%), Gaps = 134/955 (14%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVTTV 64
           ++R  FL FF++  H  +    +I      +  T + +  F+ ++ +GQ  P    +   
Sbjct: 75  AMREMFLGFFEERDHTRIEPYPVIARWRDDIHLTIASIADFQPHVTSGQVPPPANPLVIS 134

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+R      D+  VGR+ RH + FEM+ + +F    KE A+ + W        +DQ  
Sbjct: 135 QPCIRL----TDVAAVGRSGRHLSTFEMMAHHTFN-RPKEGAV-VYW--------IDQCV 180

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
            Y      DE    +     G++A +I  +   +N WS    G  GP  E+     E   
Sbjct: 181 RYC-----DE----MLSDRLGIAASEITYV---ENPWSGG--GNAGPALEVIVGGLELAT 226

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQ-----NKQERF-------------ILPKM---- 222
                  E  +  IEI  L + + + Q        ERF             I P+     
Sbjct: 227 LVFMSLEEHTDGDIEIKGLRYREMDLQIIDTGYGLERFCWAAAGTPTIYEAIYPESVEWL 286

Query: 223 -------SIDTGMGLE-----------RMATVLQEKTNNYDIDLFKHLIQA------SEQ 258
                  ++ TG+GL+           ++A +L          L++ L +       S  
Sbjct: 287 KELAGFDAMVTGLGLDVDTDALLGELSKLAGILNIDVGTDVASLYEKLAERLGEKGISIS 346

Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG-Y 317
           V  +K     + +   I DH+++   ++ DG++P+N   GY++R + RR +C  R+LG  
Sbjct: 347 VGELKRLTEPLSSIYAIPDHMQAICNMLGDGLVPSNAKAGYLVRMLARR-VC--RMLGDL 403

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
           +  + +  L A   +    +   +Q++  + + L  E+ R+ + L +G   +   L  + 
Sbjct: 404 SLAVTLAELGAHHMDTHLDFDGFVQSRSAVLQILDLEEARYHEMLRKGEAAVRTALRSVP 463

Query: 378 KDEILNGD-VAFKLYDTHGLPLDIMQDILCARGLAGIDI-ISFNQALEEQRSRARAHSLG 435
           K      D   F+L +  GL  +++  I  A G   + + + F     +  +R   H+  
Sbjct: 464 KTAAEAPDETLFRLAEERGLNPEMVVSIAHALGWENLSVRVGFAA---DMAARNALHTKA 520

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                T + +F+     GA   +        +F ++  +   +   +D +      +  +
Sbjct: 521 AAVAKTREAFFATN---GAAATV-------REFYEDTSQTAFETTVLDCSALTEVQLSTL 570

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
               E+  E        V+   T FY E GGQLGD G ++GD     + D + + E + +
Sbjct: 571 NFSSEVKGEPTHA----VILRSTLFYPEGGGQLGDQG-SLGD---TSVVDTRIEGE-VII 621

Query: 556 H--HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           H     V+ G +  +      +D+  RRQL  +H+A H++  +    LG H+ Q GS   
Sbjct: 622 HLTDGPVQAGPISGQ------VDWNRRRQLMDHHTAVHIVGGSARAHLGPHIWQAGSNKG 675

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
               R DVTH + +T  +L  IED+ N+IIA N  +   +M R +A       L   G  
Sbjct: 676 ERYARLDVTHFQRLTRDDLHQIEDHANEIIAANHSIEKLVMGRAEADQRFGFELYQGGPP 735

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              ++R++ +     G H    CGGTH    G++  L I+  S ++ G+ R++ + G+ A
Sbjct: 736 KQQQIRIIRI-----GEHDVQACGGTHHDEAGQVGELRIIRSSQVQDGVERLQIVAGETA 790

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK- 790
           R H   Q+  L   +    VS  N+   V+  +EE++  Q    KR   L  E +     
Sbjct: 791 REHARAQERLLNESSEVFGVSPENLPATVQRFFEEWKSQQ----KRIEILEAEIVRLRTS 846

Query: 791 -----IADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                  + + + + I E+D   K++ +++  L +      + ++G ++     +++  T
Sbjct: 847 GGGGDAVEKDGIRYAIMEIDGEMKQMMTMLTQLTRDASKPTLAILG-TRSDGGKLIVAST 905

Query: 844 EDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           E  L  +R +AV++    A  + GGGGGGRP +AQ GG NG+    A+      L
Sbjct: 906 EGSLAAERHDAVEILNAIAGHI-GGGGGGRPTLAQGGGSNGDGIPAALDAARQLL 959


>gi|262301363|gb|ACY43274.1| ala-tRNA synthetase [Limnadia lenticularis]
          Length = 235

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG   +   +++    +EIWNLVFM + ++      +LPK
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRDAAHLVNQDDPDVLEIWNLVFMTYNRETDGSLKVLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID GMGLER+ +V+Q+K +NYD DLF  +  A ++ T  + Y G   V         +
Sbjct: 57  KHIDCGMGLERLVSVIQDKRSNYDTDLFVPIFDAIQKGTNARPYAGKVGVEDRDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+P +C 
Sbjct: 117 RVLADHARTLTISLSDGGRPDNVGRGYVLRRILRRGVRYATEKLSAKPGFFASLVPTVCQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +GS +PE+ +   L+ + +  E+ +F KTL RG  LL+  ++ L     L GDVA++L
Sbjct: 177 VLGSTFPEVNRDPQLVMDIINDEEAQFLKTLSRGRNLLERTVAKLEGQTTLPGDVAWRL 235


>gi|262301393|gb|ACY43289.1| ala-tRNA synthetase [Scutigera coleoptrata]
          Length = 235

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 139/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG       + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSEIHYDR----VGGRNARDLVNMDDPDVLEIWNLVFIQFNRETDGSLRSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+G ER+ +V+Q K++NYD D F  L  A ++ TG + YEG    +        +
Sbjct: 57  KHIDCGLGFERIVSVIQNKSSNYDTDCFMPLFDAVQKGTGARPYEGKIGADDKDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLSAKAGFFSTLVDVVVQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +   L+++ +  E+ +F KTL RG  LL+  +S LG +++L GDVA++L
Sbjct: 177 NLGEMFPEVTKDPQLVKDIINEEEVQFLKTLSRGHRLLERTISKLGSEKVLPGDVAWRL 235


>gi|262301383|gb|ACY43284.1| ala-tRNA synthetase [Peripatus sp. 'Pep']
          Length = 235

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG   +S    +    +EIWNLVF+Q+ ++N     +LPK
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRNAASFVNMDDPDVLEIWNLVFIQYNRENDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YE---GNNIVN-----H 272
             ID GMG ER+ +V+Q K +NYD D+F  L  A ++ TG + YE   GN  V+     +
Sbjct: 57  KHIDCGMGFERLVSVIQNKNSNYDTDIFVPLFDAIQKGTGTRPYEGKVGNEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +  
Sbjct: 117 RVLADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAPPGFFGSLVHVVVN 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G A+PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG   IL GDVA++L
Sbjct: 177 LLGDAFPELKKDPEMVIDIINEEEVQFLKTLARGRRLLERTVDKLGNCNILPGDVAWRL 235


>gi|299561740|gb|ADJ36942.1| alanyl-tRNA synthetase [Stylogaster stylata]
          Length = 183

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/171 (47%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT +  L
Sbjct: 17  VTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICHWAWEFLTTKLML 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  D+        E  ++W  I G++A+ II     DNFW M ETGPCGPC
Sbjct: 77  PKERLYVTYFGGDQKGGLEPDLECKQIWLDI-GITAEHIIPGNMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SEI FD+     +P  +   +++    +EIWNLVF+QF ++       LPK
Sbjct: 136 SEIHFDRIGNRSVPELV---NQDDPDVLEIWNLVFIQFNREQNGSLKPLPK 183


>gi|322693348|gb|EFY85211.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 616

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 174/628 (27%), Positives = 281/628 (44%), Gaps = 99/628 (15%)

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYD 392
           + +P+L++ +  I++ L  E++ F KTL RG    +   +       + L+G   ++L D
Sbjct: 20  TGFPDLVKKQKDIKDVLDEEEQAFTKTLSRGERQFEKYSAQASATGSKKLSGANVWRLSD 79

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P D+ + +   RGL+ ID       + + R +AR  S+ +              K 
Sbjct: 80  TYGFPEDLTKLMAEERGLS-ID----ENEVADARQKARQDSMVI--------------KN 120

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPID----LTNG-VSSIVKAIVQQGEIVEEA-- 505
               F   ++ + +K      K   Q PP D     + G +++ V+ I    E +E    
Sbjct: 121 SVQTFAKLNIHQLAKL-----KETLQLPPSDDESKFSKGNITARVQLIFTGSEFLESTKG 175

Query: 506 -VSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIG-DGIRLQITDVQKKAEGIFVHHAIVER 562
               +   ++ D+T FYAE GGQ+ DTG   IG D    ++ DVQ+   G  VH+  +E 
Sbjct: 176 IPPNEPFGLLLDRTNFYAEQGGQVTDTGRIIIGVDVAEFKVLDVQQLG-GYIVHNGYLEY 234

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G L+    +V   D   R+ +  NH+ TH+L+H++  +LG  + Q+GS +  D LRFD +
Sbjct: 235 GELKAGDEVVSEYDELRRQLIRNNHTGTHILNHSIREVLGD-IDQHGSLVDQDRLRFDFS 293

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
           H   IT ++LK IED  N  I ++  V  +++  E A+  +G  A+ G KY + VRVVSV
Sbjct: 294 HKATITISDLKVIEDMSNAYIRRDCKVYAKVVELELALRINGIRAVFGEKYINPVRVVSV 353

Query: 682 -----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ- 729
                      E       S  LCGGTHV+ TG I  + IV E+ I +GIRR+ A TG  
Sbjct: 354 GIDVDKILEKPENPQWRNFSIELCGGTHVAKTGSIKEMVIVEENGIASGIRRVVAYTGNA 413

Query: 730 -----------------------------------RARSHLMGQDEKLKSL-ASFLKVSQ 753
                                              R R +L+      + L A F KV  
Sbjct: 414 AYAAQRDAAEFAKRIDEIDALPFGAEKEAAVKAAARDRENLIISKVTAEGLEAKFTKV-- 471

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSV 812
                 V+ + +E +K Q   +K          +  +  DV  F+ ++    ++K +  V
Sbjct: 472 ------VKSVTDEQKKRQKAESKAAFDAVTGHFAKVENKDVKFFIGYLPISANAKVIFDV 525

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVL-IVVTEDL-LDRFNAVDLARLSAKVLGGGGGGG 870
           ++  +   +   + L G S  + A V  + V +DL L    A   A   +KV+GG  GG 
Sbjct: 526 INHYKTNEKEKSVYLFGGSTAEGAVVHGVYVAKDLALKGVTAEAWAAAVSKVVGGKSGGK 585

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
            P   Q  G N  K D A+    ++L++
Sbjct: 586 EP-TRQGRGTNAEKIDDAVEAARNWLEQ 612


>gi|164503900|gb|ABY59260.1| alanyl-tRNA synthetase [Afroleptomydas sp. 'Clanwilliam']
          Length = 183

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 110/171 (64%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKETCTWAWELLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWSNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPNVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503986|gb|ABY59303.1| alanyl-tRNA synthetase [Lasiopogon aldrichii]
          Length = 183

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        D D E  ++W K+ G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLDPDLECKEIWLKL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+QF +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQFNRESDGSLKLLPK 183


>gi|262301321|gb|ACY43253.1| ala-tRNA synthetase [Acheta domesticus]
          Length = 235

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 143/238 (60%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSE+ FD+  G  +P  +   +++    +EIWNLVF+QF ++   E   LPK 
Sbjct: 1   ETGPCGPCSELHFDRIGGREVPHLV---NQDDPDVLEIWNLVFIQFNREVGGELKSLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-------YEGNNIVN--HR 273
            ID GMGLER+ +V+Q+K +NYD DLF  L QA +Q TG +        E ++ V+  +R
Sbjct: 58  HIDCGMGLERLVSVIQQKRSNYDTDLFMPLFQAIQQGTGSRPYAGLVGSEDSDGVDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L      +  L+  +   
Sbjct: 118 VLADHARTLTIALADGGYPDNTGRGYVLRRILRRAVRYATEKLNAKAGWLSSLVHVVVDL 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G  +PE+ +    I + +  E+ +F KTL RG  LL+  ++ L   + + GD+A++L
Sbjct: 178 LGDTFPEVKRDPQAIIDVINEEEIQFLKTLSRGRSLLNRTVAKLEGADTVPGDIAWRL 235


>gi|262301331|gb|ACY43258.1| ala-tRNA synthetase [Chthamalus fragilis]
          Length = 235

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 141/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPC+EI FD+     GG   ++    +    +EIWNLVF+QF +++      LPK
Sbjct: 1   DTGPCGPCTEIHFDR----IGGRDAANLVNMDDPNVVEIWNLVFIQFNRESDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             +D G+GLER+ ++LQ K +NYD DLF+ + Q   ++TG + Y G    +        +
Sbjct: 57  KHVDCGLGLERLVSILQGKLSNYDTDLFQPIFQHITKLTGARPYTGKVGADDTDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P + GRGYVLRRI+RR + YA   LG    +   L+P +  
Sbjct: 117 RVLADHVRTLTIALSDGGRPDSVGRGYVLRRILRRGVRYATEKLGARRGVFAALVPTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL +    + + +  E+ +F KTL+RG  LL+  +  LG  + L GDVA++L
Sbjct: 177 LLGDFFPELKKDPQTVMDIINEEEAQFLKTLNRGRTLLERTIGKLGDSKTLPGDVAWRL 235


>gi|262301377|gb|ACY43281.1| ala-tRNA synthetase [Neogonodactylus oerstedii]
          Length = 235

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 142/239 (59%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSEI FD+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   DTGPCGPCSEIHFDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNREPDSSLRLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YE---GNNIVN-----H 272
             ID GMGLER+ +++Q K +NYD D+F  +  A +++T    Y+   G + VN     +
Sbjct: 57  KHIDCGMGLERVVSIMQNKRSNYDTDMFTPIFDAIQRLTNAPSYQGRVGKDDVNGLDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH+R+ +  ++DG +P N+GRGYVLRRI+RR + YA   LG    +   L+  +  
Sbjct: 117 RVLADHIRTITIALSDGGMPDNQGRGYVLRRILRRGVRYASEKLGAKPGVFASLVDVVIE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +   +PE+ +    I+  +  E+ +F KTL+RG  LL+  +S L    ++ GDVA++L
Sbjct: 177 LLKGTFPEVTKDPEFIKSVINEEETQFLKTLERGRKLLERTISRLDGTTVIPGDVAWRL 235


>gi|321442083|gb|ADW85456.1| ala-tRNA synthetase [Melittia cucurbitae]
          Length = 235

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNRETDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +A E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFKAIESGTGVRPYSGKVGAEDEDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSTLIHTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  LGK +I+ GDVA++L
Sbjct: 177 LLGDVFPEITKDPNSIIQTINEEEVQFLKTLSRGRNLLNRTIEKLGKXKIIPGDVAWRL 235


>gi|262301339|gb|ACY43262.1| ala-tRNA synthetase [Dinothrombium pandorae]
          Length = 234

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 14/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSEI +D+ G+     L    +     IEIWNLVF+Q+ ++N     +LPK  
Sbjct: 1   ETGPCGPCSEIHYDKIGDRDAAYLVNMDDPD--VIEIWNLVFIQYNRENDGSLSLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           IDTGMG ER+ +V+Q K +NYD D+F+   +A +Q+T  +     +         + +RV
Sbjct: 59  IDTGMGFERLTSVIQGKPSNYDTDIFQPFFEAIQQLTNSREYSGKVGKDDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+P +   +
Sbjct: 119 LADHARTLTIALADGGRPDNVGRGYVLRRILRRAVRYATEKFNAKPGTFASLVPVVVNTL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  + EL +    I + +  E+ +F KTL RG  LL+  +S    + IL GD+A++L
Sbjct: 179 GDVFLELKKDPQTIIDIINEEEAQFLKTLSRGRKLLERAISKTDSN-ILPGDIAWRL 234


>gi|262301371|gb|ACY43278.1| ala-tRNA synthetase [Lynceus sp. 'Lyn']
          Length = 235

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 137/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   +   +++    +EIWNLVFM F ++      +LPK
Sbjct: 1   ETGPCGPCSEIHFDRI----GGRDAAHLVNQDDPDVLEIWNLVFMTFNRETDGSLKVLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID GMG ER+ +V+Q K +NYD DLFK + +A ++ T  +     +         + +
Sbjct: 57  KHIDCGMGFERLVSVIQNKRSNYDTDLFKPIFEAIQKGTNARPYTGKVGAEDPECIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  +AD   P N GRGYVLRRI+RR + YA      +P     L+P +  
Sbjct: 117 RVLADHARTITIALADHGRPDNVGRGYVLRRILRRGVRYATEKLNAKPGFFAGLVPTVIQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +   +I + +  E+ +F KTL RG  LL+  ++ LG  + L GD+A++L
Sbjct: 177 ILGPTFPEVSRDPQVIIDIINDEEAQFLKTLTRGRNLLNRTINKLGDQKTLPGDIAWRL 235


>gi|164503988|gb|ABY59304.1| alanyl-tRNA synthetase [Lasiopogon cinctus]
          Length = 183

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 109/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W K+ G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWLKL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+QF +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQFNRESDGSLKLLPK 183


>gi|262301357|gb|ACY43271.1| ala-tRNA synthetase [Idiogaryops pumilis]
          Length = 235

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 137/238 (57%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSEI +D+  G  +   +     E    +EIWNLVF+Q+ ++      +LPK 
Sbjct: 1   ETGPCGPCSEIHYDRIGGRNVAHLVNADVPE---VLEIWNLVFIQYNRETDGSLRLLPKQ 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHR 273
            +DTGMG ER+ +V+Q+K +NYD D+F  + +A ++ TG++     +         + +R
Sbjct: 58  HVDTGMGFERLVSVIQDKPSNYDTDIFMPIFEAIQKATGVRPYTGKVGKDDADGIDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTE 332
           V+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA       P     L+P +   
Sbjct: 118 VLADHSRTLTIALSDGGRPDNIGRGYVLRRILRRAVRYATEKMNAAPGTFARLVPVVVGI 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G  +PEL +    + + +  E+ +F KTL RG  LL+  +  LG  + L G VA++L
Sbjct: 178 LGDVFPELKKDPEGVMDIINEEENQFLKTLSRGRRLLEKTVGKLGDQKFLPGXVAWRL 235


>gi|164503934|gb|ABY59277.1| alanyl-tRNA synthetase [Dioctria atricapillus]
          Length = 183

 Score =  161 bits (408), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 110/171 (64%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTERLRL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E++         ++W K+ G+ A+ I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQSGLEPDLDCKEIWMKL-GVKAEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREPDSSLKLLPK 183


>gi|164503908|gb|ABY59264.1| alanyl-tRNA synthetase [Proctacanthus philadelphicus]
          Length = 183

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 110/171 (64%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEMLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +EEA         ++W+ + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEEAGLEPDNECKEIWQNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|259015951|gb|ACV89258.1| alanyl-tRNA synthetase [Boreus brumalis]
          Length = 208

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 118/192 (61%), Gaps = 15/192 (7%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAF 137
           HHTFFEMLGN+SFG YFK    + AW+LLT+ F L   RLY+T +  DE        E  
Sbjct: 2   HHTFFEMLGNWSFGDYFKTEICEWAWELLTEVFKLPADRLYVTYFGGDEASGLEPDNECK 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGE 195
           ++W ++ G+    ++  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +  
Sbjct: 62  EIWLRL-GVPPSHVLPGSMKDNFWEMGETGPCGPCSELHFDRIGGRDVPELV---NMDDP 117

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
             +EIWNLVF+QF +++      LPK  ID GMG ER+ +V+Q K  NYD DLF  L +A
Sbjct: 118 DVLEIWNLVFIQFNRESDSSLKPLPKKHIDCGMGFERLVSVIQNKRANYDTDLFVPLFEA 177

Query: 256 SEQVTGM-KYEG 266
            ++ TG  +Y+G
Sbjct: 178 IQKGTGAPQYQG 189


>gi|164503906|gb|ABY59263.1| alanyl-tRNA synthetase [Pogonioefferia pogonias]
          Length = 183

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 110/171 (64%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +EEA         ++W+ + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEEAGLEPDHECKEIWQNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|157813822|gb|ABV81656.1| putative AATS-ALA protein [Lithobius forticatus]
          Length = 236

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 143/240 (59%), Gaps = 18/240 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG       + +    +EIWNLVF+Q+ ++   +   LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDAKHLVNADDPDVLEIWNLVFIQYNREVGGKLKSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +V+Q+K++NYD D+F  + +A E+  G + YEG    +        +
Sbjct: 57  KHIDCGLGLERLVSVIQQKSSNYDTDIFVPIFKAIEEKMGARPYEGKLGADDTEGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P L   L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYASEKLKAKPGLFASLVDDVVA 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKL 390
            +G  +PE+ +   ++++ +  E+ +F KTL+RG  LL+  +  L  +  +L GDVA++L
Sbjct: 177 TLGGTFPEVTKDPQMVKDIINDEETQFLKTLNRGRRLLERTIGKLTSRQTVLPGDVAWRL 236


>gi|164503940|gb|ABY59280.1| alanyl-tRNA synthetase [Choerades bella]
          Length = 183

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+ A+ I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKEAGLEPDYECRDIWLNL-GVKAEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+QF ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQFNREADGSLKLLPK 183


>gi|299561762|gb|ADJ36953.1| alanyl-tRNA synthetase [Platypeza sp. JFG-2010]
          Length = 183

 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 79/174 (45%), Positives = 107/174 (61%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +Q VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK+     AW+ LT+ 
Sbjct: 14  WQRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGTWSFGDYFKKEICAWAWEFLTER 73

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            +L + RLY+T +  DE        E  ++W  + GL  + ++     DNFW M ETGPC
Sbjct: 74  LNLPKDRLYVTYFAGDEAAGLEPDTECKQIWLDL-GLLPEHVLPGNMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGSLKPLPK 183


>gi|164503896|gb|ABY59258.1| alanyl-tRNA synthetase [Opomydas townsendi]
          Length = 183

 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 110/171 (64%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W+ + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWQNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503928|gb|ABY59274.1| alanyl-tRNA synthetase [Molobratia teutonus]
          Length = 183

 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 109/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGHEQAGLEPDLECKEIWLKL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLRLLPK 183


>gi|262301351|gb|ACY43268.1| ala-tRNA synthetase [Hanseniella sp. 'Han2']
          Length = 235

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 138/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG   S   + +    +EIWNLVF+Q+ +++      LP+
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRDASHLVNADVPDVLEIWNLVFIQYNRESDGSLRSLPR 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----GNNIVN-----H 272
             ID GMGLER+ +V+Q K +NYD DLF  L  A E+ TG +      G + V+     +
Sbjct: 57  KHIDCGMGLERLVSVIQNKPSNYDTDLFMPLFSAIEKGTGSRPYLGRVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y       +P     L  +  E
Sbjct: 117 RVLADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAKPGFFSTLVDVVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +GS +PEL +   ++++    E+  F KTL RG  LL+  ++ LG    L GDVA++L
Sbjct: 177 LLGSTFPELQKDPQMVKDIXNEEEAMFLKTLTRGQKLLERTIAKLGDTTTLPGDVAWRL 235


>gi|262301319|gb|ACY43252.1| ala-tRNA synthetase [Aphonopelma chalcodes]
          Length = 234

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 18/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   S   + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDASDLVNADIPDVLEIWNLVFIQFNREGDGFLRSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNH 272
             +DTGMGLER+ +V+Q K++NYD DLF  + +A +++TG   Y G           + +
Sbjct: 57  KHVDTGMGLERLVSVIQNKSSNYDTDLFMPIFEAIQKLTGAPSYTGKVGAEDVDGTDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  +ADG  P + GRGYVLRRI+RRA+ Y+   LG    +   L+P + +
Sbjct: 117 RVLADHARTLTVALADGGRPDSTGRGYVLRRILRRAVRYSTEKLGGKPGMFATLVPVVVS 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  + EL +    I + L  E+++F KTL RG  LL   +  L   ++L G+VA++L
Sbjct: 177 ILGDIFTELKKDPQTIMDILNDEEQQFLKTLSRGHKLLQRTIQKLNS-KVLPGNVAWRL 234


>gi|164503890|gb|ABY59255.1| alanyl-tRNA synthetase [Phycus frommeri]
          Length = 183

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 14/167 (8%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L + R
Sbjct: 21  QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTERLKLPKER 80

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPCGPCSE+ 
Sbjct: 81  LYVTYFGGNEKAGLEPDLECKEIWLKL-GIKPEHILPGSMKDNFWEMGETGPCGPCSELH 139

Query: 177 FDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           FD+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 140 FDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREQDGTLKLLPK 183


>gi|164503942|gb|ABY59281.1| alanyl-tRNA synthetase [Lamyra gulo]
          Length = 183

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 109/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +EEA         ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEEAGLEPDYECREIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|70922133|ref|XP_734281.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56506876|emb|CAH86296.1| hypothetical protein PC301932.00.0 [Plasmodium chabaudi chabaudi]
          Length = 213

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 32/221 (14%)

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSA 148
           FG YFKE +I+ AWDLLT  + ++  RLY+T +  D+         EA K+W K   L  
Sbjct: 1   FGDYFKEESIEYAWDLLTNVYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDE 58

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVF 205
            +I+     DNFW MAETGPCGPCSEI +D+     G    S   +++    +EIWN+VF
Sbjct: 59  KRILPFGMKDNFWEMAETGPCGPCSEIHYDR----IGNRDASDLVNKDDPSVLEIWNIVF 114

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG--MK 263
           MQ+ +  K+    LP   IDTGMGLER+ ++LQ   +NYD DLF  + +  +++      
Sbjct: 115 MQYNKDEKKNMNKLPSPCIDTGMGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDIPN 174

Query: 264 YEGNNIVN----------HRVIVDHLRSSSFLIADGILPAN 294
           Y+G   +N          +RVI DH+R ++  I+DG +P+N
Sbjct: 175 YQGK--INEEDPDKIDYAYRVISDHIRCATIAISDGCIPSN 213


>gi|164503938|gb|ABY59279.1| alanyl-tRNA synthetase [Cerotainia albipilosa]
          Length = 183

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTERIKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W K+ G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKESGLEPDYECKDIWLKL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503902|gb|ABY59261.1| alanyl-tRNA synthetase [Neolophonotus bimaculatus]
          Length = 183

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W+ + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDHECKEIWRSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503904|gb|ABY59262.1| alanyl-tRNA synthetase [Philodicus tenuipes]
          Length = 183

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 110/171 (64%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W+K+ G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWEKL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++      LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPK 183


>gi|299561744|gb|ADJ36944.1| alanyl-tRNA synthetase [Heterophlebus versabilis]
          Length = 183

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/171 (47%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT +  L
Sbjct: 17  VVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDKLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +          D E  ++W KI G+  + +I    NDNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGHQESGLKPDLECKEIWLKI-GVKPEHVIPGNMNDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ-GE-CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+ GE  +P  +   +++    +EIWNLVF+QF ++   +   LPK
Sbjct: 136 SELHFDRIGERSVPELV---NQDDPDVLEIWNLVFIQFNREIDGKLKSLPK 183


>gi|299561764|gb|ADJ36954.1| alanyl-tRNA synthetase [Lamprogaster nigripes]
          Length = 183

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 105/167 (62%), Gaps = 14/167 (8%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L + R
Sbjct: 21  QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDTLHLPKDR 80

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T +  DE        E  +LW  + GL  + ++  +  DNFW M ETGPCGPCSE+ 
Sbjct: 81  LYVTYFGGDEASGLAPDLECKELWLSL-GLKPEHVLPGSMKDNFWEMGETGPCGPCSELH 139

Query: 177 FDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           FD+  G  +P  +   +++    +EIWNLVF+Q+ ++      +LPK
Sbjct: 140 FDRIGGRSVPELV---NQDDPDVLEIWNLVFIQYNREQDGSLKLLPK 183


>gi|164503980|gb|ABY59300.1| alanyl-tRNA synthetase [Scylaticus costalis]
          Length = 183

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT   +L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLNL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        D D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKEGGLDPDLECRDIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|262301385|gb|ACY43285.1| ala-tRNA synthetase [Polyzonium germanicum]
          Length = 235

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 146/237 (61%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPC+EI +D+ GE     L   + +    +EIWNLVF+QF ++      +LPK  
Sbjct: 1   ETGPCGPCTEIHYDRIGERDAASL--VNADVPDVLEIWNLVFIQFNRETDGSLRLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRV 274
           +DTGMGLER+ +V+Q K++NYD D F  +  A +  TG+ KY+G       + I + +RV
Sbjct: 59  VDTGMGLERLISVVQNKSSNYDTDAFVPIFDAIQTSTGVRKYQGLVGAQDLDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P + GRGYVLRRI+RRA+ YA      +P ++  L+  + + +
Sbjct: 119 LADHARTLTIALSDGGRPDSTGRGYVLRRILRRAVRYASEKLNAKPGVLAALVDVVVSLL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    +++ +  E+ +F KTL RG  LL+  ++ LG   +L GDVA++L
Sbjct: 179 GDTFPEVTKDPQSVKDIINEEEAQFLKTLSRGQHLLERTINKLGDQTVLPGDVAWRL 235


>gi|321442059|gb|ADW85444.1| ala-tRNA synthetase [Euclemensia bassettella]
          Length = 235

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 138/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +VLQ K  NYD DLF  L +A ++ TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVLQNKRANYDTDLFVPLFEAIQKGTGARPYTGKVGAEDVDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLIYTVVQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG  +++ GDVA++L
Sbjct: 177 LLGBVFPEITKDPESIVQLINEEENQFLKTLSRGRNLLNRTIEKLGGSKVVPGDVAWRL 235


>gi|329765739|ref|ZP_08257308.1| alanyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137805|gb|EGG42072.1| alanyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 896

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 239/966 (24%), Positives = 384/966 (39%), Gaps = 236/966 (24%)

Query: 14  FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAVTTVQKCVRA 70
           FF KNGH  +    ++      L FT + +V F+ I   +   E P    +   Q C+R 
Sbjct: 82  FFVKNGHTSVSRYPVVCRWRDDLYFTIASIVDFQRIMGSKVVFEFPA-NPLIVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  + L + LLT++F         
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSIPNSQGYWKDECVDLDFRLLTEQF--------- 187

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                            G+  ++++ +   ++ W  A  G  G   E F           
Sbjct: 188 -----------------GIKKEEVVFV---EDVW--AGGGSFGSSLEYFV---------- 215

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD-- 245
                   R +E+ N VF +F Q       IL +  ID G GLER A + +     YD  
Sbjct: 216 --------RGLELGNAVFTEF-QGELGNHTILDQKIIDMGAGLERFAWITKGTPTAYDCC 266

Query: 246 --------------------------------------IDLFKHLIQASEQVTGMKYEG- 266
                                                 ID+ KH + A    TG+  +  
Sbjct: 267 FGPITNHLFEKIGIDSDSEMLRKYFTAIAKNLEIHEDLIDVRKHAVNA----TGLSQDQI 322

Query: 267 NNIVNH----RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR---AMCYARL-LGYT 318
           N I+       +I DHLR+  F I DG LP+N G GY LR ++RR    M    L L   
Sbjct: 323 NRIITPLEGMYLIADHLRTLIFAITDGALPSNVGGGYNLRMMLRRINGTMDRMNLKLDID 382

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE-------RFGKTLDRGLVLLDG 371
           E + MH+       +   YPEL + +  ++   + E E       R GK   R       
Sbjct: 383 ELVDMHI-----DYLRDTYPELDEKRDDVKTIFKLESERYVESKVRMGKMASR------- 430

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            L   G+   +  D    LY++ G+  + +++I                 + E  S   A
Sbjct: 431 -LKDKGRAPTV--DELITLYESDGITPEYLKEI---------------NVISEIPSSFYA 472

Query: 432 HSLGLGSGTTEKIWFSLK-EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
               L     +K   SL  E    T+ +         F K+D        P++    V  
Sbjct: 473 KLSDLHQSDKKKALESLPLENIPETEML---------FYKDD--------PMEFDAKVLK 515

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
           +  +                  VV D+T FYA  GGQ  D G   G     ++ DV K  
Sbjct: 516 VFDS-----------------SVVLDRTSFYARGGGQEPDHGVIAG----AKVIDVNKDG 554

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G+ VH   +E  + +   ++   +D   R  ++ NH++TH+L+ +  ++LGS + Q+ +
Sbjct: 555 -GVIVHK--LEGQVPKEGDTVSCKVDATRRANITKNHTSTHILNSSSRSVLGSWIWQHSA 611

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
               D  R D+TH   +T  ++  IE   N+I+A+++ V     +R  A       +   
Sbjct: 612 FKEADHARLDITHHSSLTDQQVADIERKANEIVAKDMTVSIENYDRGTAEQKYGFKIYQG 671

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G      VR+VS+  ED  V +   CGGTHV  T ++ L+ I     I+ G+ R+E ++G
Sbjct: 672 GVVPVKSVRIVSI--EDFDVEA---CGGTHVKKTRDVELIKITKTKRIQDGVVRLEFVSG 726

Query: 729 QRARSHLMGQD-EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
             AR ++  Q+ E+ + L             + +E  ++ R+ +   AK K+   +E +S
Sbjct: 727 PTAREYVKQQEIERAQRLQE----------EKQKEFKDKQREEEKQKAKEKIPALLEQVS 776

Query: 788 CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVG--ISKEKKASVLIVVT 843
             K       S II E++    ++KS      K+      M  G  + K+   SV + + 
Sbjct: 777 AQK------SSAIIDEIEINVDKIKSCF-TNSKQYDEFFHMNFGKRLVKDNPNSVYVGIF 829

Query: 844 E-------------DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E             +     NA  +A+  A++LGG GGG     AQ GG + +K ++AI 
Sbjct: 830 ESGPTVRVIAYAGDEASKGKNAGIIAKSVAEILGGAGGGD-AKFAQGGGKDTSKINEAIT 888

Query: 891 GVASFL 896
              S +
Sbjct: 889 KAKSMI 894


>gi|299561746|gb|ADJ36945.1| alanyl-tRNA synthetase [Minettia lupulina]
          Length = 181

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 104/161 (64%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+  +L
Sbjct: 17  VTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLNL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEASGLGPDLECKQIWTDL-GLRPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 136 SELHFDRIGGRSVPELV---NLDDPDVLEIWNLVFIQYNRE 173


>gi|330973622|gb|EGH73688.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 118

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 83/113 (73%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y    T 
Sbjct: 4   AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT E
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSE 116


>gi|321442101|gb|ADW85465.1| ala-tRNA synthetase [Tineola bisselliella]
          Length = 235

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF +++      LPK 
Sbjct: 1   ETGPCGPCSELHFDRIGGRDVPHLV---NMDDPDVLEIWNLVFIQFNRESDGSLRSLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHR 273
            ID G+GLER+ +V+Q K  NYD DLF  L  A ++ TG++     +         + +R
Sbjct: 58  HIDCGLGLERLVSVIQNKKANYDTDLFIPLFDAIQKGTGVRPYSGKVGAEDVDGIDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L   +     L+  +   
Sbjct: 118 VLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKKGFFGSLVNTVVEL 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  + K +++ GDVA++L
Sbjct: 178 LGDVFPEIKRDPESIIQTINEEEIQFLKTLSRGRNLLNRTMEKINKTKVVPGDVAWRL 235


>gi|164504010|gb|ABY59315.1| alanyl-tRNA synthetase [Neoitamus cyanurus]
          Length = 183

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 109/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W+ + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEKAGLEPDVECQEIWRSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|262301397|gb|ACY43291.1| ala-tRNA synthetase [Skogsbergia lerneri]
          Length = 234

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 138/239 (57%), Gaps = 18/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   +S    +    +EIWNLVF+QF +        LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDAASLVNMDDPNVVEIWNLVFIQFNRDTDGGLNPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             IDTGMG ER+ +++QE+++NYD  LF  + +A ++ TG++    ++         + +
Sbjct: 57  KHIDTGMGFERLLSIIQERSSNYDTGLFTPIFEAIQKETGVRAYTGHVGADDTDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N+GRGYVLRRI+RR + YA   LG    L+  L+  +  
Sbjct: 117 RVVADHARTLTIALSDGGRPDNQGRGYVLRRILRRGVRYATEKLGAKPGLLGKLVHTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    + + +  E+E F KTL RG  LL   +S L     L GDVA++L
Sbjct: 177 LLGEQFPEVTKDPQSVIDIINEEEETFLKTLTRGQKLLSRTISKL-NGTTLPGDVAWRL 234


>gi|164503912|gb|ABY59266.1| alanyl-tRNA synthetase [Asilus sericeus]
          Length = 183

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +EEA         ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEEAGLEPDLECKEIWMNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKLLPK 183


>gi|164503888|gb|ABY59254.1| alanyl-tRNA synthetase [Bombylius major]
          Length = 183

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  VTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRVGL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W  + G+  + ++  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDNECKQIWIDL-GVRPEHVLPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGSLKLLPK 183


>gi|157813820|gb|ABV81655.1| putative AATS-ALA protein [Forficula auricularia]
          Length = 236

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 142/239 (59%), Gaps = 16/239 (6%)

Query: 165 ETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSE+ FD+  G  +P  +   +++    +EIWNLVF+Q+ +++      LPK 
Sbjct: 1   ETGPCGPCSELHFDRIGGREVPHLV---NQDDPDVLEIWNLVFIQYNRESDGSLKPLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHR 273
            ID GMG ER+ +V+QEK +NYD D+F  L +A ++ TG + Y+G           + +R
Sbjct: 58  HIDCGMGFERLVSVIQEKRSNYDTDIFTPLFEAIQKGTGSRPYQGLLGSEDSEGIDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTE 332
           V+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ +       +P     L   +   
Sbjct: 118 VLADHARTLTIALADGGHPDNTGRGYVLRRILRRAVRFGTEKLNAKPGFFASLSDTVANL 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKL 390
           +G  +PE+++    I++ +  E+E+F KTL RG  LL   +S L  D + + GDVA++L
Sbjct: 178 LGDQFPEVLKDPQSIKDIINEEEEQFLKTLSRGRNLLHRTISKLPADSKTIPGDVAWRL 236


>gi|262301333|gb|ACY43259.1| ala-tRNA synthetase [Ctenolepisma lineata]
          Length = 236

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 139/240 (57%), Gaps = 18/240 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   +++    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNQDDPDVLEIWNLVFIQFNRESDGTLKSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVN--------H 272
             ID GMGLER+ +V+Q K +NYD DLF  + +A ++ TG   Y+G    +        +
Sbjct: 57  KHIDCGMGLERIVSVIQNKRSNYDTDLFTPIFKAIQEGTGAPPYQGRVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    LG        L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGHPDNTGRGYVLRRILRRAVRYGTEKLGAKPGFFATLVSTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKL 390
            +G  +PE+      I + L  E+ +F KTL RG  LL+  ++ L GK  +L GDVA++L
Sbjct: 177 ILGDTFPEVRNDPQGIMDILNEEESQFLKTLSRGRNLLNRTIAKLDGKSNVLPGDVAWRL 236


>gi|164503956|gb|ABY59288.1| alanyl-tRNA synthetase [Leptogaster arida]
          Length = 183

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEKSGLEPDLECKNIWLSL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREQDGSLKLLPK 183


>gi|262301337|gb|ACY43261.1| ala-tRNA synthetase [Cryptocellus centralis]
          Length = 235

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 23/242 (9%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSEI +D+ G    GGL   + +    +EIWNLVF+Q+ ++N      LPK  
Sbjct: 1   ETGPCGPCSEIHYDRIGNRDAGGL--VNADVPEVVEIWNLVFIQYNRENDGSLRSLPKXH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRV 274
           +DTG+GLER+ +V+Q K +NYD DLF  L +A ++VTG++ Y+G   V+        +RV
Sbjct: 59  VDTGLGLERLVSVIQNKLSNYDTDLFTPLFEAIQKVTGIRPYQGQLGVDDSGGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH------LLPA 328
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y      TE L M       L+P 
Sbjct: 119 VADHARTLTIALSDGGRPDNTGRGYVLRRILRRAIRYG-----TEKLDMKPGQFSTLVPV 173

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           +   +G  +PEL +  L + + ++ E+ +F KTL RG  LL+  +  LG  +IL G VA+
Sbjct: 174 VVDLLGDVFPELKKDPLAVIDIIQEEEXQFLKTLARGRRLLERTVGRLGDRKILPGQVAW 233

Query: 389 KL 390
           +L
Sbjct: 234 QL 235


>gi|164503918|gb|ABY59269.1| alanyl-tRNA synthetase [Philonicus albiceps]
          Length = 183

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 109/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W+ + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWRSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503930|gb|ABY59275.1| alanyl-tRNA synthetase [Pegesimallus laticornis]
          Length = 183

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/174 (44%), Positives = 109/174 (62%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+ 
Sbjct: 14  WSRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTER 73

Query: 118 FDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +  +E+A         ++W  + G+ A+ I+  +  DNFW M ETGPC
Sbjct: 74  MKLPKDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKAEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 133 GPCSELHFDRIGGRSVPKLV---NMDDPDVLEIWNLVFIQYNREPDGSLKLLPK 183


>gi|262301403|gb|ACY43294.1| ala-tRNA synthetase [Tomocerus sp. 'Tom2']
          Length = 236

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 140/240 (58%), Gaps = 18/240 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSEI FD+     GG   +S   ++    +E+WNLVF+QF +++      LPK
Sbjct: 1   DTGPCGPCSEIHFDR----IGGRNAASLVNQDDPDVLEVWNLVFIQFNRESDGSLKSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID GMGLER+ +V+Q K +NYD DLF  + +A  Q TG +     +         + +
Sbjct: 57  KHIDCGMGLERIVSVIQGKRSNYDTDLFVPIFEAIRQATGARPYTGKVGAEDTDGLDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA    + +P L   L+  +  
Sbjct: 117 RVVADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGVRYAIEKLHGKPGLFARLVNVVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKL 390
            +G  +PE+ +    + + +  E+ +F KTL+RG  LL+  +S L   E  L GDVA+++
Sbjct: 177 ILGDTFPEVRKDPQSVMDVINEEEAQFLKTLNRGRNLLERTVSKLTSGETTLPGDVAWRM 236


>gi|164503914|gb|ABY59267.1| alanyl-tRNA synthetase [Dysmachus trigonus]
          Length = 183

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE+A         ++W+ + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEKAGLEPDLECKEIWRSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++      LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKQLPK 183


>gi|164503982|gb|ABY59301.1| alanyl-tRNA synthetase [Tillobroma punctipennis]
          Length = 183

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 109/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA-----FK---LWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A     F+   +W K+ G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDFECKDIWLKL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKLLPK 183


>gi|164503974|gb|ABY59297.1| alanyl-tRNA synthetase [Plesiomma sp. 'Guanacaste']
          Length = 183

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERIKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKERLYVTYFGGNEQAGLEPDLECRNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503946|gb|ABY59283.1| alanyl-tRNA synthetase [Nusa infumata]
          Length = 183

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT   +L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLNL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +EEA          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEEAGLEPDYECRDIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKLLPK 183


>gi|164503944|gb|ABY59282.1| alanyl-tRNA synthetase [Laxenecera albicincta]
          Length = 183

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERIKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEAAGLEPDYECRDIWLSL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREADGNLTLLPK 183


>gi|164503894|gb|ABY59257.1| alanyl-tRNA synthetase [Mitrodetus dentitarsis]
          Length = 183

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQSGLEPDLECKEIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503910|gb|ABY59265.1| alanyl-tRNA synthetase [Asilus crabroniformis]
          Length = 183

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKERLYVTYFGGNKEAGLEPDLECKEIWMNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKLLPK 183


>gi|319740493|gb|ADV60540.1| ala-tRNA synthetase [Lemonia dumi]
          Length = 235

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 137/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRETDGTLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +  E+ TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFETIEKGTGIRPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTITIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNXKPGFFGSLVYTVVN 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  LG  +I+ GD+A++L
Sbjct: 177 LLGDVFPEIKKDPDSIVQTINEEEVQFLKTLSRGRNLLNRTIEKLGDSKIIPGDIAWRL 235


>gi|321442103|gb|ADW85466.1| ala-tRNA synthetase [Tinea columbariella]
          Length = 235

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF +++      LPK 
Sbjct: 1   ETGPCGPCSELHFDRIGGREVPHLV---NMDDPDVLEIWNLVFIQFNRESDGSLRSLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHR 273
            ID G+GLER+ +V+Q K  NYD DLF  L  A ++ TG++     +         + +R
Sbjct: 58  HIDCGLGLERLVSVIQNKNANYDTDLFVPLFDAIQKGTGVRSYSGKVGAEDVDSIDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTE 332
           V+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   
Sbjct: 118 VLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVNTVVEL 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  + K +++ GDVA++L
Sbjct: 178 LGDVFPEIKRDPESIIQTINEEEIQFLKTLIRGRNLLNRTMEKIDKTKVVPGDVAWRL 235


>gi|164503950|gb|ABY59285.1| alanyl-tRNA synthetase [Laphystia tolandi]
          Length = 183

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNAEAGLEPDIECKNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+QF +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQFNRESDGSLKLLPK 183


>gi|164503990|gb|ABY59305.1| alanyl-tRNA synthetase [Stichopogon punctum]
          Length = 183

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLRLLPK 183


>gi|321442069|gb|ADW85449.1| ala-tRNA synthetase [Ethmia eupostica]
          Length = 235

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 137/237 (57%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ G+     L    +     +EIWNLVF+QF ++      +LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGDRNAAHLVNMDDPD--VLEIWNLVFIQFNRETDGSLKLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRV 274
           ID G+GLER+ +V+Q K  NYD DLF  L +A E+ TG++ Y G   V         +RV
Sbjct: 59  IDCGLGLERLVSVIQNKKANYDTDLFMPLFKAIEKGTGVRAYSGKVGVEDIDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +
Sbjct: 119 LADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVYTVVEIL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 179 GDVFPEIKKDPESIIQTINEEEIQFLKTLSRGRNLLNRTIEKLNDSKTVPGDVAWRL 235


>gi|262301381|gb|ACY43283.1| ala-tRNA synthetase [Periplaneta americana]
          Length = 235

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 141/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   +++    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGRDAAHLVNQDDPDVLEIWNLVFIQFNRESDGSLRSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNH 272
             ID G+GLER+ +V+Q+K +NYD DLF  L  A ++ TG   Y+G       + I + +
Sbjct: 57  KHIDCGLGLERLVSVIQQKRSNYDTDLFMPLFDAIQKGTGAPPYKGRVGEEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTISLSDGGRPDNTGRGYVLRRILRRGVRYATEKLNAKPGFFASLVNTVVX 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +  L + + +  E+ +F KTL RG  LL+  +  LG  + + GDVA++L
Sbjct: 177 ILGDTFPEVKKDPLSVMDIINEEEAQFLKTLSRGRNLLNRTILKLGDSKTVPGDVAWRL 235


>gi|164503978|gb|ABY59299.1| alanyl-tRNA synthetase [Rhabdogaster pedion]
          Length = 183

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 105/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGHKEAGLEPDLECRDIWMNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREQDSSLKLLPK 183


>gi|262301345|gb|ACY43265.1| ala-tRNA synthetase [Eremocosta gigasella]
          Length = 235

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 140/242 (57%), Gaps = 23/242 (9%)

Query: 165 ETGPCGPCSEIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI 218
           +TGPCGPCSEI FD+         +   +P         +EIWNLVF+QF ++       
Sbjct: 1   DTGPCGPCSEIHFDRIGNRDAKHLVNADVPD-------VLEIWNLVFIQFNRETDGVLKP 53

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI- 269
           LPK  +DTGMGLER+ +V+Q K +NYD DLF  + +A E+ TG + Y+G       + I 
Sbjct: 54  LPKKHVDTGMGLERLVSVIQCKXSNYDTDLFVPIFEAIEKSTGARPYQGKVGKEDEDGID 113

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPA 328
           + +RV+ DH+R+ +  ++D   P N GRGYVLRRI+RRA+ +A      +P     L+P 
Sbjct: 114 MAYRVLADHIRTLTVALSDXGRPDNTGRGYVLRRILRRAVRFATEKLNAKPGTFASLVPV 173

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           +   +G  +PE+ +    + + +  E+ +F KTL RG  LL+  +  LG   +L G+VA+
Sbjct: 174 VVDILGDTFPEIKKDPQSVMDIINDEETQFLKTLSRGHRLLERTIHKLGDQNLLPGNVAW 233

Query: 389 KL 390
           +L
Sbjct: 234 RL 235


>gi|164503966|gb|ABY59293.1| alanyl-tRNA synthetase [Acnephalum cylindricum]
          Length = 183

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERVKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        D D E  ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKEAGLDPDLECREIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREPDGSLRLLPK 183


>gi|164503976|gb|ABY59298.1| alanyl-tRNA synthetase [Prolepsis tristis]
          Length = 183

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ Q+      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNQELDGSLRLLPK 183


>gi|321442073|gb|ADW85451.1| ala-tRNA synthetase [Fulgoraecia exigua]
          Length = 235

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 142/239 (59%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNRETDGSLKMLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------EGNNIVN--H 272
             ID G+GLER+ +V+Q K  NYD D+F  L +A E+ TG++        E N+ ++  +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDIFMPLFEAIEKGTGVRAYTGKVGKEDNDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P  +  L+  +  
Sbjct: 117 RVLADHVRTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFLGSLVFKVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    +   +  E+ +F KTL RG  LL+  +  LG  +I+ G+VA++L
Sbjct: 177 LLGEVFPEIKRDPYNVINIINEEETQFLKTLTRGRGLLNRTIEKLGDSKIIPGEVAWRL 235


>gi|183011886|gb|ACC37872.1| alanyl-tRNA synthetase [Heterocheila buccata]
          Length = 183

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 102/171 (59%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE     AW+ LT    L
Sbjct: 17  VVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEEICSFAWEFLTDCLKL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  + W  + G+  + I+     DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEKSSLEADLECQQFWLNL-GVKPEHILPGNMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+     +P  +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 136 SELHFDRIGDRSVPELV---NMDDPDVLEIWNLVFIQFNREQNGSLKLLPK 183


>gi|164503922|gb|ABY59271.1| alanyl-tRNA synthetase [Dasypogon diadema]
          Length = 183

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGHEAAGLEPDLECKDIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503958|gb|ABY59289.1| alanyl-tRNA synthetase [Leptogaster cylindrica]
          Length = 183

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEKAGLEPDLECKDIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREQDGSLKLLPK 183


>gi|164503920|gb|ABY59270.1| alanyl-tRNA synthetase [Tolmerus atricapillus]
          Length = 183

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 108/171 (63%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWMSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503994|gb|ABY59307.1| alanyl-tRNA synthetase [Damalis annulata]
          Length = 183

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTERVQL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  ++EA          +W K+ GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKEAGLEPDLDCRDIWLKL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++       LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREPDGTLKPLPK 183


>gi|164503936|gb|ABY59278.1| alanyl-tRNA synthetase [Atomosia puella]
          Length = 184

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 106/172 (61%), Gaps = 15/172 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERIKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKERLYVTYFGGNKDAGLEPDYECRDIWLNL-GIKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ---GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+   G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGGRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKLLPK 184


>gi|183011936|gb|ACC37897.1| alanyl-tRNA synthetase [Palaeosepsis pusio]
          Length = 162

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/166 (45%), Positives = 103/166 (62%), Gaps = 14/166 (8%)

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L + RL
Sbjct: 1   KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGLPKDRL 60

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPCSE+ F
Sbjct: 61  YVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPCSELHF 119

Query: 178 DQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           D+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 120 DRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREQDSSLKLLPK 162


>gi|164503996|gb|ABY59308.1| alanyl-tRNA synthetase [Damalis monochaetes]
          Length = 183

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTERVKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W K+ G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKEAGLEPDLECRDIWLKL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++       LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREQDGSLKPLPK 183


>gi|164503952|gb|ABY59286.1| alanyl-tRNA synthetase [Trichardis sp. TD-2008]
          Length = 183

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECRNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKLLPK 183


>gi|321442075|gb|ADW85452.1| ala-tRNA synthetase [Eterusia aedea]
          Length = 235

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/237 (37%), Positives = 137/237 (57%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ G      L   + +    +EIWNLVF+Q+ ++      +LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGNRNAAHL--VNMDDPDVLEIWNLVFIQYNRETDGSLKMLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q+K  NYD D F  L +A EQ TG++     +         + +RV
Sbjct: 59  IDCGLGLERLVSVIQDKKANYDTDFFVPLFKAIEQGTGVRPYSGKVGAEDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  + + +
Sbjct: 119 LADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFAGLVNTVVSLL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L    I+ GD+A++L
Sbjct: 179 GDVFPEIKKDPESIMQTINDEEIQFLKTLTRGRNLLNRTIEKLNGSNIIPGDLAWRL 235


>gi|183011996|gb|ACC37927.1| alanyl-tRNA synthetase [Toxopoda sp. 2 RM-2008]
          Length = 181

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 102/161 (63%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 20  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLCL 79

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 80  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 138

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++
Sbjct: 139 SELHFDRIGGXSVPELV---NMDXPDVLEIWNLVFIQFNRE 176


>gi|183011976|gb|ACC37917.1| alanyl-tRNA synthetase [Themira biloba]
          Length = 167

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/161 (47%), Positives = 101/161 (62%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L
Sbjct: 9   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTERLCL 68

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W ++ GL  + I+     DNFW M ETGPCGPC
Sbjct: 69  PKDRLYVTYFGGDEASGLEPDLECKQIWTEL-GLKPEHILPGNMKDNFWEMGETGPCGPC 127

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++
Sbjct: 128 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRE 165


>gi|183011928|gb|ACC37893.1| alanyl-tRNA synthetase [Microsepsis armillata]
          Length = 179

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 81/183 (44%), Positives = 106/183 (57%), Gaps = 19/183 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPXFLGTAXPNSEMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQ 207
            I+     DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +E WNLVF+Q
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEXWNLVFIQ 176

Query: 208 FEQ 210
           F +
Sbjct: 177 FNR 179


>gi|164503924|gb|ABY59272.1| alanyl-tRNA synthetase [Diogmites grossus]
          Length = 183

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKDIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKLLPK 183


>gi|183011882|gb|ACC37870.1| alanyl-tRNA synthetase [Icaridion debile]
          Length = 183

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 102/171 (59%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  VVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTDCLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        D D E  ++W  + GL  + +I     DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDESSGLDPDYECRQIWLDL-GLKTEHVIPGNMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+     +P  +   + +    +EIWNLVF+Q+ ++       LPK
Sbjct: 136 SELHFDRIGSRSVPELV---NMDDPDVLEIWNLVFIQYNREQNSTLMPLPK 183


>gi|164503898|gb|ABY59259.1| alanyl-tRNA synthetase [Mydas clavatus]
          Length = 183

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 111/174 (63%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+ 
Sbjct: 14  WVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTER 73

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E  ++W+K+ G+  + I+  +  DNFW M ETGPC
Sbjct: 74  LKLPKDRLYVTYFGGNEQAGLEPDLECKEIWQKL-GIKPEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|183011884|gb|ACC37871.1| alanyl-tRNA synthetase [Gluma nitida]
          Length = 177

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 103/168 (61%), Gaps = 14/168 (8%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   ++ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 10  EMSKWKRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEF 69

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT    L + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M E
Sbjct: 70  LTDRLKLPRERLYVTYFGGDETCGLAPDMECRQIWLDL-GLKPEHILPGNMKDNFWEMGE 128

Query: 166 TGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           TGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 129 TGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 173


>gi|299561766|gb|ADJ36955.1| alanyl-tRNA synthetase [Chyliza scrobiculata]
          Length = 184

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 109/175 (62%), Gaps = 15/175 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+ 
Sbjct: 14  WLRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTER 73

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            +L + RLY+T +        + D E  ++W  + GL A+ I+  +  DNFW M ETGPC
Sbjct: 74  LNLPKDRLYVTYFGGHAESGLEPDLECRQIWLDL-GLKAEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ---GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+   G  +P  +   + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 133 GPCSELHFDRIGGGRSVPELV---NMDDPDVLEIWNLVFIQYNREADSSLRLLPK 184


>gi|321442093|gb|ADW85461.1| ala-tRNA synthetase [Pryeria sinica]
          Length = 235

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ G      L   + +    +EIWNLVF+QF ++       LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGNRNAAHL--VNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRV 274
           ID G+GLER+ +V+Q K+ NYD D F  L +A E+ TG++ Y G    N        +RV
Sbjct: 59  IDCGLGLERLVSVIQNKSANYDTDFFMPLFKAIEEGTGVRAYTGKVGANDVDGVDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +
Sbjct: 119 LADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVHTVVELL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 179 GDVFPEIKRDPKSIIQTINEEEIQFLKTLIRGRNLLNRTIEKLNDSKIVPGDLAWRL 235


>gi|164503926|gb|ABY59273.1| alanyl-tRNA synthetase [Lestomyia fraudiger]
          Length = 183

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQSGLEPDLECKDIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREPDGSLKLLPK 183


>gi|164503960|gb|ABY59290.1| alanyl-tRNA synthetase [Emphysomera pallidapex]
          Length = 183

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PSDRLYVTYFGGHEQAGLEPDLECKNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503916|gb|ABY59268.1| alanyl-tRNA synthetase [Machimus occidentalis]
          Length = 183

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLDNVG+   HHTFFEM GN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDNVGKDVNHHTFFEMXGNWSFGDYFKKEICSWAWEMLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWTNL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++      LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKQLPK 183


>gi|164503972|gb|ABY59296.1| alanyl-tRNA synthetase [Lycostommyia albifacies]
          Length = 183

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 107/171 (62%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A         ++W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|164503984|gb|ABY59302.1| alanyl-tRNA synthetase [Willistonina bilineata]
          Length = 183

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREPDGSLKLLPK 183


>gi|183011926|gb|ACC37892.1| alanyl-tRNA synthetase [Meroplius fukuharai]
          Length = 175

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLCL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 173


>gi|183011890|gb|ACC37874.1| alanyl-tRNA synthetase [Archisepsis excavata]
          Length = 161

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/165 (46%), Positives = 102/165 (61%), Gaps = 14/165 (8%)

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L + RLY
Sbjct: 1   CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGLPKDRLY 60

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPCSE+ FD
Sbjct: 61  VTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPCSELHFD 119

Query: 179 Q--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +  G  +P  +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 120 RIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREADSSLKLLPK 161


>gi|299561756|gb|ADJ36950.1| alanyl-tRNA synthetase [Toxoneura superba]
          Length = 171

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 99/157 (63%), Gaps = 14/157 (8%)

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+  I  AW+ LT   +L 
Sbjct: 18  TNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEIISWAWEFLTDRLELP 77

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  + W  + GL  + II  +  DNFW M ETGPCGPCS
Sbjct: 78  KDRLYVTYFGGHPESGLEPDLECRQFWIDM-GLKEEHIIPGSMKDNFWEMGETGPCGPCS 136

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQF 208
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q 
Sbjct: 137 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQL 170


>gi|319740503|gb|ADV60545.1| ala-tRNA synthetase [Oxytenis modestia]
          Length = 235

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L     E
Sbjct: 117 RVLADHARTLTIALSDGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGTLVNTVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIQVINEEEIQFLKTLTRGRNLLNRTIEKLDDSKIIPGDVAWRL 235


>gi|299561730|gb|ADJ36937.1| alanyl-tRNA synthetase [Thecophora occidensis]
          Length = 173

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 104/168 (61%), Gaps = 14/168 (8%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   + AW+ 
Sbjct: 10  EMSKWTRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICRWAWEF 69

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT    L    LY+T +  D         E  +LW ++ G++ D I+  T  DNFW M E
Sbjct: 70  LTVCLKLPIDNLYVTYFGGDSQCSLPPDLECKQLWIEL-GITPDHIVAGTMKDNFWEMGE 128

Query: 166 TGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           TGPCGPCSEI FD+  G  +P  +   +++    +EIWNLVF+QF ++
Sbjct: 129 TGPCGPCSEIHFDRIGGRNVPELV---NKDDPDVLEIWNLVFIQFNRE 173


>gi|164503964|gb|ABY59292.1| alanyl-tRNA synthetase [Ommatius tibialis]
          Length = 183

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEMLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PSDRLYVTYFGGNEKAGLEPDLECKNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 183


>gi|321442089|gb|ADW85459.1| ala-tRNA synthetase [Poecilocampa populi]
          Length = 235

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   DTGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDSTLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +A E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFKAIENGTGTRPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPRFFASLVYTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G+ +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 177 LLGNVFPEIKKDPKSIIQLINEEEVQFLKTLSRGRNLLNRTIEKLNNSKIIPGDVAWRL 235


>gi|183011906|gb|ACC37882.1| alanyl-tRNA synthetase [Dicranosepsis cf. sauteri RM-2008]
          Length = 177

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/178 (45%), Positives = 105/178 (58%), Gaps = 19/178 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVF 205
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVF 177


>gi|262301367|gb|ACY43276.1| ala-tRNA synthetase [Leiobunum verrucosum]
          Length = 235

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   S   + +    +EIWNLVF+Q+ +++      LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRQASHLVNADVPDVLEIWNLVFIQYNRESDGSLKQLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------H 272
             +DTGMG ER+ +V+QEK +NYD D F  + +A EQ TG +     + N         +
Sbjct: 57  KHVDTGMGFERLVSVIQEKPSNYDTDCFMPIFKAIEQATGTRXYTGKVGNDDEGMIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM-HLLPALCT 331
           RV+ DH R+ +  +ADG  P N GRGYVLRR++RRA+ +A      +P M   L+P +  
Sbjct: 117 RVVADHARTLTVALADGGTPDNTGRGYVLRRVLRRAVRFATEKLNAKPGMFAQLVPVVIE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL +    I + +  E+ +F KTL RG  LL+  +S L   +IL GDVA++L
Sbjct: 177 SLGDVFPELSKDPNSIMDIINDEEAQFLKTLSRGHKLLERTISKLDNSKILPGDVAWRL 235


>gi|262301343|gb|ACY43264.1| ala-tRNA synthetase [Eurytemora affinis]
          Length = 236

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 134/239 (56%), Gaps = 16/239 (6%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSEI +D+   I GG   +   + +    +EIWNLVFMQ+ ++  +    LP 
Sbjct: 1   DTGPCGPCSEIHYDR---IGGGRDAAHLVNMDDPDVLEIWNLVFMQYNREQDKSLKQLPN 57

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID GMG ER+ +V+Q+K +NYD DLF    Q  +  TG++     +         + +
Sbjct: 58  KHIDCGMGFERLVSVVQDKRSNYDTDLFLPFFQHIQAGTGVRAYAGRVGAEDTDGIDMAY 117

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG        L+  +  
Sbjct: 118 RVLADHARTLTIALSDGGRPDNVGRGYVLRRILRRGVRYASEKLGAKPGFFASLVHTVVQ 177

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    + + +  E+ +F KTL RG  LLD  +S L   + L GD+A++L
Sbjct: 178 VLGETFPEVKKDPQTVIDIINEEETQFLKTLSRGQKLLDRTISKLEGAKELPGDIAWRL 236


>gi|262301327|gb|ACY43256.1| ala-tRNA synthetase [Artemia salina]
          Length = 235

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   +   +++    +EIWNLVFM + +++      LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDAADLVNKDDPDVLEIWNLVFMTYNRESDGTLKYLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +V+QEK +NYD DLF  L  A ++ T M+ Y G   V         +
Sbjct: 57  KHIDCGLGLERLVSVVQEKRSNYDTDLFVPLFDAIQKGTSMQAYSGKVGVEDKEGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+  +  
Sbjct: 117 RVVADHIRTLTIALSDGGRPDNVGRGYVLRRILRRGVRYATEKLKAKPGFFGSLVHVVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  + E+ +    I   +  E+ +F KTL RG  LL+  ++ LG  ++L G++A++L
Sbjct: 177 ILGDTFSEIKKDPETIISIIDEEERQFLKTLSRGKSLLERTVAKLGDSKVLPGNIAWRL 235


>gi|183011922|gb|ACC37890.1| alanyl-tRNA synthetase [Dicranosepsis unipilosa]
          Length = 170

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 100/158 (63%), Gaps = 14/158 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLAL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQF 208
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQY 170


>gi|183011892|gb|ACC37875.1| alanyl-tRNA synthetase [Archisepsis pleuralis]
          Length = 173

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 105/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 7   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGL 66

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPC
Sbjct: 67  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPC 125

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 126 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREADSSLKLLPK 173


>gi|259015923|gb|ACV89245.1| alanyl-tRNA synthetase [Ctenocephalides felis]
          Length = 214

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 128/218 (58%), Gaps = 23/218 (10%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--DE------DEEAFKLW 140
           FFEMLGN+SFG YFK+     AW+LLT+ F L   RLY+T +  DE      DEE  ++W
Sbjct: 1   FFEMLGNWSFGDYFKKEICAWAWELLTQVFKLPADRLYVTYFGGDEASGLAADEECKQIW 60

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYI 198
             +  LS+  ++     DNFW M ETGPCGPCSE+ +D+     +P  +   + +    +
Sbjct: 61  LDLGVLSS-HVLPGNMKDNFWEMGETGPCGPCSELHYDRIGNRDVPHLV---NMDDPDVL 116

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           EIWNLVF+Q+ ++   E  +LPK  ID GMG ER+ +V+Q K  NYD DLF  L +A + 
Sbjct: 117 EIWNLVFIQYNRETDGELKLLPKKHIDCGMGFERLVSVIQNKRANYDTDLFGPLFEAIQS 176

Query: 259 VTGM-KYEG-------NNI-VNHRVIVDHLRSSSFLIA 287
            TG   Y+G       + I + +RV+ DH R+ +  +A
Sbjct: 177 GTGAPPYQGRIGKDDKDGIDMAYRVLADHARTITIALA 214


>gi|164503962|gb|ABY59291.1| alanyl-tRNA synthetase [Afroestricus chiastoneurus]
          Length = 166

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 14/167 (8%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L   R
Sbjct: 4   QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTERLKLPSDR 63

Query: 125 LYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPCSE+ 
Sbjct: 64  LYVTYFGGNEQAGLEPDLECKNIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPCSELH 122

Query: 177 FDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 123 FDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 166


>gi|321442091|gb|ADW85460.1| ala-tRNA synthetase [Prionoxystus robiniae]
          Length = 235

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 139/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q +  NYD DLF  L +A E+ TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNRRANYDTDLFVPLFKAIERGTGVRPYSGKVGPEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLIHTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L + + + G+VA++L
Sbjct: 177 ILGDVFPEIKKDPESIIQTINEEEIQFLKTLSRGRNLLNRTIEKLSESKTVPGEVAWRL 235


>gi|319740511|gb|ADV60549.1| ala-tRNA synthetase [Quentalia chromana]
          Length = 235

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 133/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRETDASLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGVRPYSGKVGADDSDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L     E
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRGVRYASEKLNAKPGFFGTLVHTVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIQTINEEEIQFLKTLSRGRSLLNRTIEKLDNSKTIPGDVAWRL 235


>gi|299561748|gb|ADJ36946.1| alanyl-tRNA synthetase [Melanina sp. JFG-2010]
          Length = 183

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 108/174 (62%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT  
Sbjct: 14  WVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEFLTHR 73

Query: 118 FDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            +L + RLY+T +          D+E  ++W ++ GL  + I+  +  DNFW M ETGPC
Sbjct: 74  LNLPKDRLYVTYFGGDASSNLAPDDECRQIWLEL-GLKPEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGILKLLPK 183


>gi|259015921|gb|ACV89244.1| alanyl-tRNA synthetase [Microchorista philpotti]
          Length = 199

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 116/188 (61%), Gaps = 15/188 (7%)

Query: 90  FEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWK 141
           FEMLGN+SFG YFK+   + AW+LLT+ F L + RLY+T +          DEE   LW 
Sbjct: 1   FEMLGNWSFGDYFKKEICEWAWELLTQVFKLPRDRLYVTYFGGDKVSGLQPDEECRDLWI 60

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIE 199
           ++ G+    +I  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +E
Sbjct: 61  RL-GVPPTHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPEFV---NMDDPDVLE 116

Query: 200 IWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           IWNLVF+QF +++     +LPK  ID GMG ER+ +V+Q K  NYD D+F  L +A ++ 
Sbjct: 117 IWNLVFIQFNRESDASLKLLPKKHIDCGMGFERLVSVIQNKRANYDTDIFMPLFEAIQKG 176

Query: 260 TGM-KYEG 266
           TG  +Y+G
Sbjct: 177 TGAPEYQG 184


>gi|259015937|gb|ACV89251.1| alanyl-tRNA synthetase [Hydropsyche phalerata]
          Length = 208

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 114/193 (59%), Gaps = 17/193 (8%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEMLGN+SFG YFK+     AW+LLT+   L   RLY+T +        D D+E  
Sbjct: 2   HHTFFEMLGNWSFGDYFKKEICSWAWELLTEVLKLPSERLYVTYFGGDSKSGLDPDDECK 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEG 194
            +W  + G+    I+  +  DNFW M ETGPCGPCSE+ FD+     GG   +   + + 
Sbjct: 62  NIWLNL-GVLPSHILPGSMKDNFWEMGETGPCGPCSELHFDR----IGGREAAHLVNMDD 116

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
              +EIWNLVF+QF ++      +LPK  ID G+GLER+ +V+Q K  NYD D+F  + +
Sbjct: 117 PDVLEIWNLVFIQFNRETDGSLRLLPKKHIDCGLGLERLVSVIQNKRANYDTDIFVPIFE 176

Query: 255 ASEQVTGMK-YEG 266
           A ++ T  + Y G
Sbjct: 177 AIQKGTNSRPYSG 189


>gi|321442107|gb|ADW85468.1| ala-tRNA synthetase [Trogoptera salvita]
          Length = 235

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD DLF  L +A E  TGM+     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDLFMPLFKAIEIGTGMRPYSGKVGDEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLIYTVID 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    +   +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 177 ILGDVFPEIKKDPESLIHLINEEEIQFLKTLSRGRNLLNRTMEKLNDSKTIPGDVAWRL 235


>gi|164503948|gb|ABY59284.1| alanyl-tRNA synthetase [Pilica formidolosa]
          Length = 183

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKEAGLEPDYECQNIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+     +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGNRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKLLPK 183


>gi|183011940|gb|ACC37899.1| alanyl-tRNA synthetase [Platytoxopoda sp. RM-2008]
          Length = 170

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 100/158 (63%), Gaps = 14/158 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLCL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQF 208
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQY 170


>gi|299561754|gb|ADJ36949.1| alanyl-tRNA synthetase [Spilogona sp. JFG-2010]
          Length = 183

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 106/174 (60%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+ 
Sbjct: 14  WVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTER 73

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +  DE        E  +LW  + GL  + I+  +  DNFW M ETGPC
Sbjct: 74  LRLPEDRLYVTYFGGDEASGLAPDLECKQLWLDL-GLRPEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGSLKSLPK 183


>gi|299561728|gb|ADJ36936.1| alanyl-tRNA synthetase [Leopoldius coronatus]
          Length = 182

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/173 (45%), Positives = 105/173 (60%), Gaps = 14/173 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK    + AW+ LT  
Sbjct: 13  WVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTEICRWAWEFLTNR 72

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L +  LY+T +  DE        E  +LW  I G+  + I+  T  DNFW M +TGPC
Sbjct: 73  LQLSKDNLYVTYFGGDEKSGLAPDVECKQLWLDI-GVIPEHIVPGTLKDNFWEMGDTGPC 131

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           GPCSEI FD+  G  +P  +   +++    +EIWNLVF+Q+ +++      LP
Sbjct: 132 GPCSEIHFDRIGGRSVPELV---NQDDPDVLEIWNLVFIQYNREDNGNLLALP 181


>gi|321442111|gb|ADW85470.1| ala-tRNA synthetase [Eucalantica sp. JCR-2011]
          Length = 235

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNREVDGTLKALPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +++Q+K  NYD D F  L +  E+ TG++ Y G   +         +
Sbjct: 57  KHIDCGLGLERLVSIIQDKRANYDTDFFMPLFKVIERGTGVRPYSGKVGIEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L     E
Sbjct: 117 RVLADHARTLTIALSDGGFPDNTGRGYVLRRILRRAVRYASEKLXAKPKFFGTLVHTVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG   ++ GDVA++L
Sbjct: 177 ILGDVFPEIKKDPEGIIQVINDEEIQFLKTLSRGRKLLNRTIEKLGNITVVPGDVAWRL 235


>gi|299561736|gb|ADJ36940.1| alanyl-tRNA synthetase [Dalmannia vitiosa]
          Length = 183

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 102/171 (59%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK    + AW+ L    +L
Sbjct: 17  VVNTQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGDYFKLEICKWAWEFLIDSLEL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY+T +        D D E  ++W  I GL    I+  +  DNFW M + GPCGPC
Sbjct: 77  PKDNLYVTYFGGDEKSGLDPDLECKQIWLNI-GLDVSHIVPGSMKDNFWEMGDIGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SEI FD+  G  +P  +   +++    +EIWNLVF+QF ++       LPK
Sbjct: 136 SEIHFDRIGGRSVPELV---NKDDPDVLEIWNLVFIQFNREKDGSLRPLPK 183


>gi|321442055|gb|ADW85442.1| ala-tRNA synthetase [Caloptilia bimaculatella]
          Length = 235

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q+K  NYD D F  L  A E+ TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQDKKANYDTDFFIPLFNAIEKGTGSRPYTGKVGPDDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    + E +  E+ +F KTL RG  LL+  +  LG  + + GDVA++L
Sbjct: 177 TLGDVFPEIKKNPEGVIEVINEEEIQFLKTLTRGRNLLNRTIDKLGNSKTVPGDVAWRL 235


>gi|321442081|gb|ADW85455.1| ala-tRNA synthetase [Lasiocampa quercus]
          Length = 235

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/237 (37%), Positives = 135/237 (56%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           +TGPCGPCSE+ +D+ G+     L   + +    +EIWNLVF+QF +++     +LPK  
Sbjct: 1   DTGPCGPCSELHYDRIGDRNAAHL--VNMDDPDVLEIWNLVFIQFNRESDGTLKLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q K  NYD D F  L +A E  TG +     +         + +RV
Sbjct: 59  IDCGLGLERLVSVIQNKRANYDTDFFMPLFKAIENGTGTRPYSGKVGTDDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +
Sbjct: 119 LADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVDLL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 179 GHVFPEIKKDPKTIVQLINEEEVQFLKTLSRGRNLLNRTIEKLTNSKIIPGDIAWRL 235


>gi|184161011|gb|ACC68527.1| alanyl-tRNA synthetase [Ospriocerus aeacus]
          Length = 183

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 104/171 (60%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PSDRLYVTYFGGNEQAGLEPDLECKDIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKLLPK 183


>gi|164503968|gb|ABY59294.1| alanyl-tRNA synthetase [Connomyia varipennis]
          Length = 183

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFF+MLGN+SFG YFK+     AW+LLT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFKMLGNWSFGDYFKKEICTWAWELLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKEAGLEPDLECKDIWLNL-GVKPEHILPGSMKDNFWDMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREPDGSLRLLPK 183


>gi|321442047|gb|ADW85438.1| ala-tRNA synthetase [Amauta cacica]
          Length = 235

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +V+Q K  NYD D F  L +A E  TG++ Y G   V         +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFVPLFKAIEDGTGVRSYTGKVGVEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPEFFSSLVNTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 177 LLGDVFPEIKKDPESIIQIINEEEVQFLKTLSRGRNLLNRTMDKLNDSKTVPGDIAWRL 235


>gi|164503932|gb|ABY59276.1| alanyl-tRNA synthetase [Saropogon luteus]
          Length = 183

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECKDIWLSL-GVKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+     +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGDRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKLLPK 183


>gi|183011934|gb|ACC37896.1| alanyl-tRNA synthetase [Ortalischema albitarse]
          Length = 167

 Score =  154 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 99/157 (63%), Gaps = 14/157 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 15  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEFLTERLCL 74

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  K+W  + GL  + II  +  DNFW M ETGPCGPC
Sbjct: 75  PKDRLYVTYFGGDKASGLEPDYECQKIWLDL-GLKPEHIIPGSMKDNFWEMGETGPCGPC 133

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQ 207
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q
Sbjct: 134 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQ 167


>gi|183011880|gb|ACC37869.1| alanyl-tRNA synthetase [Lopa convexa]
          Length = 173

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 102/164 (62%), Gaps = 14/164 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           Y  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT  
Sbjct: 11  YIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCAWAWEFLTVR 70

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        D D E  ++W ++ GL  + II     DNFW M ETGPC
Sbjct: 71  MKLPKERLYVTYFGGDESGGLDADIECRQIWLQL-GLQPEHIIPGNIKDNFWEMGETGPC 129

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++
Sbjct: 130 GPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRE 170


>gi|157813830|gb|ABV81660.1| putative AATS-ALA protein [Podura aquatica]
          Length = 237

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 143/240 (59%), Gaps = 17/240 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+   I GG   +S    +    +E+WNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSEIHFDR---IGGGRNAASLVNMDDPDVLEVWNLVFIQFNRESDGSLKSLPK 57

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID GMGLER+ +V+Q K +NYD DLF  + +A E+ TG + Y G   V         +
Sbjct: 58  KHIDCGMGLERIVSVIQNKRSNYDTDLFVPIFKALEKATGSRAYSGKVGVEDSDGVDMAY 117

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG    L   L+  +  
Sbjct: 118 RVVADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGIRYAIEKLGGKPGLFAQLVDTVIE 177

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKL 390
            +GS +PEL +    +++ +  E+ +F KTL RG  LL+  +S L    ++L GD+A++L
Sbjct: 178 SLGSTFPELSKDPQSVKDVINEEESQFLKTLSRGRSLLERTVSKLEXGCKVLPGDIAWRL 237


>gi|321442053|gb|ADW85441.1| ala-tRNA synthetase [Axia margarita]
          Length = 235

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEIGTGVRPYTGKVGAEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG  +I+ GDVA++L
Sbjct: 177 LLGEVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLGXSKIIPGDVAWRL 235


>gi|262301373|gb|ACY43279.1| ala-tRNA synthetase [Hexagenia limbata]
          Length = 236

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/240 (37%), Positives = 140/240 (58%), Gaps = 18/240 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+QF +++  E  +LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGELRLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNH 272
             ID G+G ER+ +V+Q K +NYD D+F  +  A ++ TG   Y+G           + +
Sbjct: 57  KHIDCGLGYERLVSVIQNKRSNYDTDVFVPIFDAIQKGTGCPPYQGRVGAEDKDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    LG        L+  +  
Sbjct: 117 RVLADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPGFFATLVHVVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKL 390
            +G  +PE+ +    + E +  E+++F KTL RG  LL+  +  LG + ++L G++A++L
Sbjct: 177 LLGDTFPEVRRDPTAVVEVINEEEQQFLKTLARGRSLLNRTVERLGSETKVLPGEIAWRL 236


>gi|319740505|gb|ADV60546.1| ala-tRNA synthetase [Phiditia sp. JCR-2009]
          Length = 235

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + ++ E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+ ++  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLIYSVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLEBSKIIPGDVAWRL 235


>gi|164503992|gb|ABY59306.1| alanyl-tRNA synthetase [Stichopogon trifasciatus]
          Length = 183

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+ 
Sbjct: 14  WVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTER 73

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPC
Sbjct: 74  LKLPKDRLYVTYFGGNEQAGLEADLECKNIWLSL-GVKPEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNRESDGSLRLLPK 183


>gi|321442085|gb|ADW85457.1| ala-tRNA synthetase [Platynota idaeusalis]
          Length = 235

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 138/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+Q+ +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A +  TG + Y G           + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFVPIFEAIQTGTGSRPYSGKVGDDDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +  + I +T+  E+ +F KTL RG  LL+  +  LG  + + G+VA++L
Sbjct: 177 ILGDVFPEIKKDPVSIIQTINEEEIQFLKTLTRGRNLLNRTIEKLGDSKTVPGEVAWRL 235


>gi|183011896|gb|ACC37877.1| alanyl-tRNA synthetase [Archisepsis scabra]
          Length = 175

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 104/170 (61%), Gaps = 14/170 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 10  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGL 69

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPC
Sbjct: 70  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPC 128

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LP
Sbjct: 129 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREADSSLKLLP 175


>gi|319740489|gb|ADV60538.1| ala-tRNA synthetase [Bombyx mori]
          Length = 235

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 133/237 (56%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ GE     L    +     +EIWNLVF+QF ++      +LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGEREAAHLVNMDDPD--VLEIWNLVFIQFNRETDGSLKLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRV 274
           ID G+GLER+ +V+Q K  NYD D F  + +A E  TG++ Y G   ++        +RV
Sbjct: 59  IDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGIDDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +
Sbjct: 119 LADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I   +  E+ +F KTL RG  LL   +  L   + L GDVA++L
Sbjct: 179 GDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRL 235


>gi|183011912|gb|ACC37885.1| alanyl-tRNA synthetase [Dicranosepsis emiliae]
          Length = 182

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 14/173 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT  
Sbjct: 14  WVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTXR 73

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPC
Sbjct: 74  LALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LP
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREADSSLKLLP 182


>gi|299561726|gb|ADJ36935.1| alanyl-tRNA synthetase [Physocephala marginata]
          Length = 167

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 97/155 (62%), Gaps = 14/155 (9%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   + AW+ LT    L
Sbjct: 17  VVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICKWAWEFLTDNLQL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY+T +  DE        E  +LW  I G+  D I+  +  DNFW M +TGPCGPC
Sbjct: 77  SKENLYVTYFGGDEKNNLEADIECKQLWLDI-GVIPDHIVPGSLKDNFWEMGDTGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVF 205
           SEI FD+  G  +P  +   +++    +EIWNLVF
Sbjct: 136 SEIHFDRIGGRSVPELV---NKDDPDVLEIWNLVF 167


>gi|299561774|gb|ADJ36959.1| alanyl-tRNA synthetase [Campiglossa pygmaea]
          Length = 169

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/156 (47%), Positives = 99/156 (63%), Gaps = 14/156 (8%)

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT   +L 
Sbjct: 18  TNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEMCTWAWEFLTDRMNLP 77

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPCGPCS
Sbjct: 78  KDRLYVTYFGGDKASGLEPDLECKQMWLDL-GLRPEHILPGSMKDNFWEMGETGPCGPCS 136

Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQ 207
           E+ FD+  G  +P  +   + +    +EIWNLVF+Q
Sbjct: 137 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQ 169


>gi|164503954|gb|ABY59287.1| alanyl-tRNA synthetase [Lasiocnemus lugens]
          Length = 183

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 107/174 (61%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+ 
Sbjct: 14  WVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWELLTER 73

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E   +W  + G+  + I+  +  DNFW M ETGPC
Sbjct: 74  LQLPKDRLYVTYFGGNEQAGLEPDLECRDIWLSL-GVKPEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREQDGSLKLLPK 183


>gi|157813832|gb|ABV81661.1| putative AATS-ALA protein [Speleonectes tulumensis]
          Length = 235

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 134/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG   +   + +    +EIWNLVF+QF +        LPK
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRDTSGTLNPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID GMG ER+ +V+Q+  +NYD DLF  L  A  + TG++     +         + +
Sbjct: 57  KHIDCGMGFERVVSVIQDLHSNYDTDLFIPLFDAIHKGTGVRCYTGKVGEEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y       +P     L+  +  
Sbjct: 117 RVLADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAKPGFFATLVDVVIQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G+ +PEL +   ++++ +  E+ +F KTL RG  LL   +  LG  + L GDVA++L
Sbjct: 177 VLGATFPELKKDPEMLKDIINEEEAQFLKTLSRGRNLLQRTIRKLGDQKNLPGDVAWRL 235


>gi|321442065|gb|ADW85447.1| ala-tRNA synthetase [Acraga philetera]
          Length = 235

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGREAAHXVNMDDPDVLEVWNLVFIQYNREKDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNH 272
             ID G+GLER+ +V+Q K +NYD DLF  L +A E  TG K Y G           + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRSNYDTDLFVPLFKAIETGTGAKPYTGKVGAEDVDGTDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTISLSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVXTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I   +  E+ +F KTL+RG  LL+  +  LG    + GD+A++L
Sbjct: 177 ILGDTFPEIKKDPEAIIHIINEEEIQFLKTLNRGRNLLNRTIEKLGDTXTVPGDIAWRL 235


>gi|84490050|ref|YP_448282.1| alanyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|121707543|sp|Q2NEW4|SYA_METST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84373369|gb|ABC57639.1| AlaS [Methanosphaera stadtmanae DSM 3091]
          Length = 903

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 205/894 (22%), Positives = 353/894 (39%), Gaps = 187/894 (20%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPC---NDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           I+  F  FF+ +GH  +    ++     ND  +    + +  F+   T G  +P    + 
Sbjct: 56  IQKKFKGFFKDHGHTPINRYPVLAKRWRND--VFLVGASIYDFQPWVTSGMVRPPANPLV 113

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q  +R     ND+DNVGRT RH T F M  + +F       Y+K   ++   + L   
Sbjct: 114 VAQPSIRL----NDVDNVGRTGRHMTCFTMGAHHAFNTDETPIYWKNETLRYCHEFLVS- 168

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                      G++ ++I  I   +++W     G  GP  EI  
Sbjct: 169 --------------------------IGINPEEITYI---ESWWKGG--GNEGPSFEI-- 195

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G            +E+  LVF+Q+       + I P   +DTG GLER+A V 
Sbjct: 196 ----CAHG------------VELATLVFIQYATTKDGLKEI-PLKIVDTGYGLERIAWVS 238

Query: 238 QEKTNNYD---------------IDLFKHLIQASEQVTGM-------------------- 262
           Q     YD               ++L   ++  + ++ GM                    
Sbjct: 239 QGTPTAYDATFGSVIDKLTDISGVELNTEILSENARIAGMMDIEDISDLKLLRKKVADKL 298

Query: 263 -------KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                  K     +    ++ DH R  SF++ADGI+P+N   GY+ R ++RR + Y   L
Sbjct: 299 SLDPDMLKKTTAPMEAIYIVADHTRCLSFMLADGIIPSNVKEGYLARLVLRRTVKYMNEL 358

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  E L   ++      +   YPE+   K  I      E+ER+  TL +           
Sbjct: 359 GLNESLS-DIMKMQVDYLSKTYPEIKDNKDHIINITDLEEERYHTTLTK----------- 406

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA--GIDIISFNQALEEQ------RS 427
            GK+ +       K  +    P D++ +   + G+    ++ IS   A +          
Sbjct: 407 -GKNLVKRSIKTLKKQNKKSFPTDMLINFYDSHGIPPETVEAISKENAFDANIPDNFYTQ 465

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
            A AH         E         +  T+   YD L+   F                   
Sbjct: 466 IAAAHEEEEEEEIEEMEL-----NFPKTKLSFYDDLKQRTF------------------- 501

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDV 546
            ++ V  +V   +I+             +QT +Y E GGQ  D G     +G  L IT  
Sbjct: 502 -TAKVLGVVDSNKII------------LNQTIYYPEGGGQPSDIGTITRVNGEVLNITYA 548

Query: 547 QKKAEGIFVHHAIVER-----GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           QK  +GI +HH   E       I+  E++    ID + R  L+ NH+ATHL+  +   +L
Sbjct: 549 QK-VDGIVLHHVAKEDESKLDNIVGEEITG--EIDSKRRDLLTRNHTATHLVIASAREVL 605

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H+ Q G+    D  R D++H K I+  E++ IE   N  + +N PV  +  +R DA  
Sbjct: 606 GKHIWQAGAQKGLDKTRIDLSHYKRISHEEVQEIERLANKRVQENHPVNIQWYDRTDAEV 665

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L   G      +RVV +     G+   A C GTH   TG+I ++ ++    ++ G
Sbjct: 666 KYGFKLYQGGIVPGKNIRVVEIP----GIDVQA-CAGTHCEKTGDIGVIKLLRTERVQDG 720

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778
           + R+E          +   D+ +++ +    V    +    +  + E+++ Q  I +  K
Sbjct: 721 VERLEYAVSDSGIKKIQDDDDIIRNSSDVFGVDAEQLPRTCKRFFNEWKEQQKRIKSLEK 780

Query: 779 LQLNVEDLSC-HKIADVNFMSHI--ISEVDSKELKSV-MDALQKKIQSGIIMLV 828
               V+  S  ++IA++N  + I  + +VD+ +L+ + ++ ++K+  + I +L+
Sbjct: 781 QLAQVKIFSLENEIANINGYNVITEVLDVDNNQLREIAINLVEKEEVADIAILI 834


>gi|262301349|gb|ACY43267.1| ala-tRNA synthetase [Eurypauropus spinosus]
          Length = 235

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPC+EI +D+        P  + +    +EIWNLVF+QF +++      LPK  +
Sbjct: 1   DQGPCGPCTEIHYDR-IGXRDAAPLVNADVPDVLEIWNLVFIQFNRESDGSLRSLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVI 275
           DTGMG ER+ +V+Q K +NYD D+F  +  A ++ TG + Y G       + I + +RV+
Sbjct: 60  DTGMGFERLVSVIQNKMSNYDTDVFTPIFDAIQKGTGCRPYSGLVGADDKDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMG 334
            DH R+ +  +ADG  P + GRGYV+RRI+RRA+ YA      +P     L+  +   + 
Sbjct: 120 ADHARTLTVTLADGGHPDSVGRGYVMRRILRRAVRYAHEKLNAKPGFFATLVDIVLQLLA 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I++T+  E+ +F KTL RG  LL+  +  LG      GDVA++L
Sbjct: 180 ETFPELAKDPQSIKDTINEEESQFLKTLSRGRKLLERTIVKLGNTTTFPGDVAWRL 235


>gi|164503998|gb|ABY59309.1| alanyl-tRNA synthetase [Holcocephala calva]
          Length = 183

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 103/171 (60%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLT+   L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKIEICTWAWELLTERLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E   +W  + G+  + I+     DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNKNAGLEPDIECKNIWLNL-GIKPEHILPGNMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+     +P  +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 136 SELHFDRIGNRSVPELV---NMDDPDVLEVWNLVFIQYNRETDGTLKLLPK 183


>gi|157813838|gb|ABV81664.1| putative AATS-ALA protein [Antheraea paukstadtorum]
          Length = 235

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFXPIFKAIENGTGARPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L     E
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPXFFASLVYTVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRNIEKLNNSKTIPGDVAWRL 235


>gi|319740509|gb|ADV60548.1| ala-tRNA synthetase [Paonias myops]
          Length = 235

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L ++ E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFKSIEIGTGARPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    + + +  E+ +F KTL RG  LL+  +  L K +I+ GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESLVQLINEEEIQFLKTLTRGRNLLNRTMEKLDKSKIIPGDVAWRL 235


>gi|299561770|gb|ADJ36957.1| alanyl-tRNA synthetase [Strongylophthalmyia angustipennis]
 gi|299561772|gb|ADJ36958.1| alanyl-tRNA synthetase [Toxomerus marginatus]
          Length = 171

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/154 (47%), Positives = 98/154 (63%), Gaps = 14/154 (9%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L   R
Sbjct: 21  QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERMKLPADR 80

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T +  DE        E  ++W  + GL  + ++  +  DNFW M ETGPCGPCSE+ 
Sbjct: 81  LYVTYFGGDEKSGLAPDSECRQIWLDL-GLKPEHVLPGSMKDNFWEMGETGPCGPCSELH 139

Query: 177 FDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQF 208
           FD+  G  +P  +   + +    +EIWNLVF+Q+
Sbjct: 140 FDRIGGRSVPELV---NMDDPDVLEIWNLVFIQY 170


>gi|183011980|gb|ACC37919.1| alanyl-tRNA synthetase [Themira leachi]
          Length = 173

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 14/157 (8%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L + R
Sbjct: 21  QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTERLCLPKDR 80

Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LY+T +        + D E  ++W ++ G+  + I+  +  DNFW M ETGPCGPCSE+ 
Sbjct: 81  LYVTYFGGDAASGLEPDLECKQMWTEL-GVKPEHILPGSMKDNFWEMGETGPCGPCSELH 139

Query: 177 FDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 140 FDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 173


>gi|217033202|ref|ZP_03438651.1| hypothetical protein HPB128_150g2 [Helicobacter pylori B128]
 gi|216945066|gb|EEC23778.1| hypothetical protein HPB128_150g2 [Helicobacter pylori B128]
          Length = 367

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 188/376 (50%), Gaps = 24/376 (6%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V  +TPFYAE GG +GD G    D     +    K   G+      +++ + + +  +  
Sbjct: 3   VVRKTPFYAEGGGAIGDRGTLFKDNEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQ 62

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+
Sbjct: 63  VSD--ERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELE 120

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +ED VN  I ++L      M    A   GA AL   KY + VRVVS +       S  L
Sbjct: 121 KVEDLVNAQIFKHLTSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEV-----SIEL 175

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK   
Sbjct: 176 CGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--N 233

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +V+  + ++ E  +  Q    K  + +   DL   KI  V+ +  ++ + D KE+   +
Sbjct: 234 NDVIAGINKLKESVKNSQ----KAPVSM---DLPIEKIHGVSLVVGVVEQGDIKEM---I 283

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D L+ K +  + M+    KE +   L    ++   + NA   A   A++L GG GGGR  
Sbjct: 284 DRLKSKHERLLAMV--FKKENERITLACGVKNAPIKANA--WANEVAQIL-GGKGGGRDD 338

Query: 874 MAQSGGPNGNKADQAI 889
            A +GG +  K   A+
Sbjct: 339 FASAGGKDTEKLQAAL 354


>gi|262301375|gb|ACY43280.1| ala-tRNA synthetase [Milnesium tardigradum]
          Length = 235

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   S+   ++    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSEIHFDR----JGGRDASALVNQDDPDVLEIWNLVFIQFNREPDSSLVPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             IDTGMGLER+ +V+Q K +NYD DLF  + +A E+ TG +     +         + +
Sbjct: 57  KHIDTGMGLERLVSVIQNKRSNYDTDLFMPIFKAIEKGTGSRAYXGKVGXEDTDKMDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH+R+    ++DG  P N GRGYVLRRI+RRA+ YA      +P  +  L+P +  
Sbjct: 117 RVVADHIRTLVXALSDGGRPDNVGRGYVLRRILRRAIRYASEKLNAKPGFLGSLVPTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G A+PE+ +    +   +  E+ +F +TL RG  LL+  ++  G  ++L+G+VA++L
Sbjct: 177 MLGDAFPEVRKDPTTVTRIIDEEETQFLRTLVRGRRLLERTINQSGXSKVLSGEVAWRL 235


>gi|299561750|gb|ADJ36947.1| alanyl-tRNA synthetase [Lonchoptera tristis]
          Length = 183

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/171 (45%), Positives = 105/171 (61%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  AANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W  + GL  + II  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGHEESGLEGDLECKQIWLDL-GLKPEHIIPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ +D+  G  +P  +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 136 SELHYDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 183


>gi|183011994|gb|ACC37926.1| alanyl-tRNA synthetase [Toxopoda sp. 1 RM-2008]
          Length = 180

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 102/161 (63%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLCL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFXRE 173


>gi|321442087|gb|ADW85458.1| ala-tRNA synthetase [Pollanisus sp. JCR-2011]
          Length = 235

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L  A ++ TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFVPLFTAIQKGTGTRPYSGKVGTEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G+ +PE+ +    I++ +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 177 LLGNVFPEIKKDPESIKQIINEEEIQFLKTLTRGRNLLNRTIDKLKNSKIVPGDLAWRL 235


>gi|319740513|gb|ADV60550.1| ala-tRNA synthetase [Saturnia naessigi]
          Length = 235

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGVRPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVYTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 177 LLGDVFPEINKDPDSIIQLINEEEIQFLKTLSRGRNLLNRTIEKLNNSKTIPGDVAWRL 235


>gi|330974797|gb|EGH74863.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 152

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/146 (50%), Positives = 101/146 (69%), Gaps = 2/146 (1%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDH 278
           LP  S+DTGMGLER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH
Sbjct: 9   LPAPSVDTGMGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADH 66

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +RS  FLIADG+LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+P
Sbjct: 67  IRSCGFLIADGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFP 126

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDR 364
           EL+Q +  IE  L+ E+E+F KTL++
Sbjct: 127 ELVQQQSHIERVLKGEEEQFAKTLEQ 152


>gi|157813840|gb|ABV81665.1| putative AATS-ALA protein [Cydia pomonella]
          Length = 235

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 134/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD DLF  L +A E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDLFMPLFKAIEVGTGSRPYTGKVGDEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVHTVID 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    +++ +  E+ +F KTL RG  LL+  +  LG    + G+VA++L
Sbjct: 177 ILGDVFPEIKKDPESVKQIINEEEVQFLKTLTRGRNLLNRTIEKLGHSNSIPGEVAWRL 235


>gi|321442041|gb|ADW85435.1| ala-tRNA synthetase [Apha aequalis]
          Length = 235

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 132/237 (55%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ FD+ G      L   + +    +EIWNLVF+QF +++      LPK  
Sbjct: 1   ETGPCGPCSELHFDRIGNRNAAHL--VNMDDPDVLEIWNLVFIQFNRESDGSLKQLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q K  NYD D F  L ++ E  TG +     +         + +RV
Sbjct: 59  IDCGLGLERLVSVIQNKRANYDTDFFMPLFKSIESGTGTRPYSGKVGTDDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-M 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L     E +
Sbjct: 119 LADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGTLVYTVVELL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I   +  E+ +F KTL RG  LL+  +  LG  +I+ GDVA++L
Sbjct: 179 GDIFPEIKKDPDSIVLLINEEEIQFLKTLSRGRNLLNRTMEKLGGSKIIPGDVAWRL 235


>gi|157813826|gb|ABV81658.1| putative AATS-ALA protein [Mastigoproctus giganteus]
          Length = 235

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 138/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG    S    +    +EIWNLVF+QF ++N      LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDAQSLVNADVADVLEIWNLVFIQFNRENDGSLIPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             +DTGMGLER+ +V+Q KT+NYD DLF  +  A ++ TG +     +         + +
Sbjct: 57  KHVDTGMGLERIVSVIQCKTSNYDTDLFVPIFDAIQKATGARPYAGRLGSEDTDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L     +   L+P    
Sbjct: 117 RVLADHVRTLTVALSDGGRPDNTGRGYVLRRILRRAIRYATEKLRARRGMFADLVPVAVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL +    + + +  E+ +F KTL RG  LL+  +  L   +IL GDVA++L
Sbjct: 177 LLGDVFPELRKDPQNVMDIINDEEIQFLKTLSRGRYLLERTIGKLDDQKILPGDVAWRL 235


>gi|319740485|gb|ADV60536.1| ala-tRNA synthetase [Acanthobrahmaea europaea]
          Length = 235

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/237 (37%), Positives = 134/237 (56%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ G+     L   + +    +EIWNLVF+QF ++       LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGDRNAAHL--VNMDDPDVLEIWNLVFIQFNRETGGALKPLPKRH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q K  NYD D F  L +A ++ TG++     +         + +RV
Sbjct: 59  IDCGLGLERLVSVIQNKRANYDTDFFMPLFEAIQKGTGIRPYSGKVGADDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +
Sbjct: 119 LADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYAFEKLNAKSGFFGSLVYTVVKLL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 179 GDVFPEIKKDPDSIVQMINEEEVQFLKTLSRGRNLLNRTIEKLDDSKIIPGDIAWRL 235


>gi|321442071|gb|ADW85450.1| ala-tRNA synthetase [Emmelina monodactyla]
          Length = 235

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 133/237 (56%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ G      L    +     +EIWNLVF+QF ++      +LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGNRDAAHLVNMDDPD--VLEIWNLVFIQFNRETDGSLKLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q+K  NYD DLF  L +A E  TG +     +         + +RV
Sbjct: 59  IDCGLGLERLVSVIQDKRANYDTDLFMPLFKAIEVGTGARPYSGKVGADDEDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +
Sbjct: 119 LADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYACEKLNAKSGFFGTLVYKVVEIL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    + + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 179 GDVFPEIKKDPEAVIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNVKVIPGDVAWRL 235


>gi|319740487|gb|ADV60537.1| ala-tRNA synthetase [Apatelodes torrefacta]
          Length = 235

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGARPYSGKVGAEDIDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYSTEKLNGKPGFFSSLVYTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I   +  E+ +F KTL RG  LL+  +  L    I+ GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIVHIINDEEIQFLKTLTRGRNLLNRTIEKLNSSTIIPGDVAWRL 235


>gi|321442045|gb|ADW85437.1| ala-tRNA synthetase [Alucita sp. JCR-2011]
          Length = 235

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNREKDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +A EQ TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEQGTGVRPYSGKVGDEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVRTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNSKIIPGDVAWRL 235


>gi|321442113|gb|ADW85471.1| ala-tRNA synthetase [Zeuzera coffeae]
          Length = 235

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 137/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +S   ++    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAASLVNKDDPDVLEIWNLVFIQFNRESDGSLQSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+G ER+ +V+Q K  NYD DLF  L +A E+ TG++ Y G   V         +
Sbjct: 57  KHIDCGLGFERLVSVIQNKKANYDTDLFVPLFKAIEEGTGVREYSGKVGVEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVNTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +   +PE+ +    + +T+  E+ +F KTL RG  LL+  +  L   + + GDVA+++
Sbjct: 177 LLEDTFPEINKDPKSVIQTINEEEIQFLKTLLRGRNLLNRTIEKLNDCKTVPGDVAWRM 235


>gi|321442063|gb|ADW85446.1| ala-tRNA synthetase [Dalcerides ingenita]
          Length = 235

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +E+WNLVF+Q+ ++      +LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGREAAHLVNMDDPDVLEVWNLVFIQYNREKDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNH 272
             ID G+GLER+ +V+Q K +NYD DLF  L +A E  TG K Y G           + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRSNYDTDLFVPLFKAIESGTGAKPYTGKVGAEDVNGTDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 177 ILGDTFPEIKKDPEAIIHIINEEEIQFLKTLTRGRNLLNRTIDKLNDTKTVPGDIAWRL 235


>gi|299561768|gb|ADJ36956.1| alanyl-tRNA synthetase [Rachispoda sp. JFG-2010]
          Length = 174

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 103/164 (62%), Gaps = 14/164 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+ 
Sbjct: 14  WVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTER 73

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E  + W  + GL A+ +I  +  DNFW M ETGPC
Sbjct: 74  LHLPKDRLYVTYFGGDAASGLEPDLECKQYWLDL-GLLAEHVIPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRE 173


>gi|262301317|gb|ACY43251.1| ala-tRNA synthetase [Armillifer armillatus]
          Length = 234

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 137/239 (57%), Gaps = 18/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           + GPCGPCSEI +D+     G    S   ++     +EIWNLVF+Q+ +++      LP 
Sbjct: 1   DVGPCGPCSEIHYDR----IGNRDASHLVNKNDPNVLEIWNLVFIQYNRESNGNLHFLPS 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVN--------H 272
             ID G+G ER+ +V+Q   +NYD DLF  L +  ++ TG+  Y G   +         +
Sbjct: 57  KHIDCGLGFERLVSVIQGTLSNYDTDLFSPLFECIQKKTGLPPYSGKVGIEDSSGYDTAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ Y       +P L+  L+P +  
Sbjct: 117 RVVADHARTLTVALADGGRPDNTGRGYVLRRILRRAVRYCCDKFKCKPGLLSSLVPVVIH 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            + + +PEL + + +I++ + +E+  F KTL RG +LL   +  L K+ IL G VA+KL
Sbjct: 177 TLKNIFPELSKNQEIIQDLINTEEVLFLKTLKRGQLLLKRAIEGLPKN-ILPGQVAWKL 234


>gi|299561734|gb|ADJ36939.1| alanyl-tRNA synthetase [Dalmannia nigriceps]
          Length = 183

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/171 (44%), Positives = 100/171 (58%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK    + AW+ L     L
Sbjct: 17  VVNTQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGTWSFGDYFKLDICKWAWEFLIDSLKL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY+T +        D D E  ++W  I GL    I+  +  DNFW M + GPCGPC
Sbjct: 77  PKDNLYVTYFGGDEKSGLDPDLECKQIWLDI-GLDVSHIVPGSMKDNFWEMGDIGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SEI FD+  G  +P  +   +++    +EIWNLVF+QF ++       LPK
Sbjct: 136 SEIHFDRIGGRSVPELV---NKDDPDVLEIWNLVFIQFNREKNGSLRPLPK 183


>gi|153810791|ref|ZP_01963459.1| hypothetical protein RUMOBE_01175 [Ruminococcus obeum ATCC 29174]
 gi|149833187|gb|EDM88269.1| hypothetical protein RUMOBE_01175 [Ruminococcus obeum ATCC 29174]
          Length = 153

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 93/139 (66%), Gaps = 4/139 (2%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG EKP    V+T
Sbjct: 6   VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPRTRVST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAN 121

Query: 124 RLYITVYDEDEEAFKLWKK 142
           RLY +VY +D+EAF +W K
Sbjct: 122 RLYPSVYQDDDEAFDIWNK 140


>gi|183011916|gb|ACC37887.1| alanyl-tRNA synthetase [Dicranosepsis javanica]
          Length = 176

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLAL 76

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 173


>gi|157813842|gb|ABV81666.1| putative AATS-ALA protein [Prodoxus quinquepunctellus]
          Length = 235

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+Q+ +++      LPK
Sbjct: 1   ETGPCGPCSELHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKFLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +  ++ TG++ Y G           + +
Sbjct: 57  KHIDCGLGLERLVSVIQGKRANYDTDFFMPLFEEIQKGTGVRAYTGKVGDDDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTVALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVHTVVK 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL +    I ET+  E+ +F KTL RG  LL+   + LG   I+ GDVA++L
Sbjct: 177 CLGDTFPELKRDPQSIIETINEEEIQFLKTLSRGRNLLNRTFTKLGNSTIVPGDVAWRL 235


>gi|183011944|gb|ACC37901.1| alanyl-tRNA synthetase [Saltella nigripes]
          Length = 182

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 104/170 (61%), Gaps = 14/170 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLCL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W  + GL  + I+     DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILPGNMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++      +LP
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREADSSLKMLP 182


>gi|183011958|gb|ACC37908.1| alanyl-tRNA synthetase [Sepsis indica]
          Length = 167

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 101/161 (62%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 9   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLAL 68

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPC
Sbjct: 69  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPC 127

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 128 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 165


>gi|319740499|gb|ADV60543.1| ala-tRNA synthetase [Nataxa flavescens]
          Length = 235

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + ++ E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGTDDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHNVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G+ +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 177 LLGNVFPEIKKDPESIIQLINEEEIQFLKTLCRGRNLLNRTMDKLDASKIIPGDVAWRL 235


>gi|319740515|gb|ADV60551.1| ala-tRNA synthetase [Carthaea saturnioides]
          Length = 235

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +V+Q K  NYD D F  L ++ E  TG++ Y G    +        +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFESIENGTGVRPYTGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTMEKLDDSKTIPGDVAWRL 235


>gi|319740495|gb|ADV60541.1| ala-tRNA synthetase [Malacosoma americanum]
          Length = 235

 Score =  150 bits (379), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 139/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++      LPK
Sbjct: 1   DTGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKFLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +A E  +G++ Y G    +++    + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEIGSGIRPYTGXVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 177 LLGHVFPEIKKDPKSIVQLINEEEIQFLKTLSRGRNLLNRTIEKLSNSKIIPGDIAWRL 235


>gi|164503970|gb|ABY59295.1| alanyl-tRNA synthetase [Gonioscelis ventralis]
          Length = 183

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/171 (43%), Positives = 102/171 (59%), Gaps = 14/171 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT    L
Sbjct: 17  VCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLKL 76

Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  +E+A          +W  + G+    I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGNEQAGLEPDLECRDIWLSL-GVKPQHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SE+ FD+     +P  +   + +    +E+WNLVF+Q+ ++       LPK
Sbjct: 136 SELHFDRIGDRSVPELV---NMDDPDVLEVWNLVFIQYNREADGSLKSLPK 183


>gi|319740507|gb|ADV60547.1| ala-tRNA synthetase [Prismosticta fenestrata]
          Length = 235

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 133/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +V+Q K  NYD D F  + ++ E  TG++ Y G    +        +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKSIEHGTGVRPYSGKVXADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPEFFGSLVHTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L     + GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLDSSTTIPGDVAWRL 235


>gi|261884369|ref|ZP_06008408.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 274

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/283 (35%), Positives = 157/283 (55%), Gaps = 17/283 (6%)

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D  PF A++ GQ  DTG  +G   ++Q  D  KK  G+ +  +++E         +VL  
Sbjct: 4   DSIPFKAQSAGQCEDTGM-LG---KIQAPDT-KKYFGLIL--SMIEAKTSLKIGDIVLCE 56

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
              NR ++  +HSATH+L  AL  +LG+H++Q GS +  D LRFD +H KP+T  EL+ I
Sbjct: 57  VSLNRLEIRRHHSATHILQAALRNVLGAHIAQAGSSVEADKLRFDFSHPKPVTKEELEKI 116

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+ VN+ I +  P    IM+ ++A  SGA AL G KY D+VRV+++        S  LCG
Sbjct: 117 ENFVNEAILKGAPAKIEIMDIQNAKKSGAIALFGEKYADKVRVLTLG------PSKELCG 170

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV +  EI   +IV ES + AG+RRIEA+  + A        +++  +   LK    +
Sbjct: 171 GTHVENLNEIGSFFIVRESGVSAGVRRIEAVCSKAALELSKEFRKEINDIKDSLK--GAD 228

Query: 756 VVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNF 796
            +  ++++ +E + LQ  L +A     LNV+D++  K+    F
Sbjct: 229 PLLSIKKLKDEIKSLQNDLKNASNTKDLNVKDINGVKVVVSKF 271


>gi|321442097|gb|ADW85463.1| ala-tRNA synthetase [Spodoptera frugiperda]
          Length = 234

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 136/239 (56%), Gaps = 18/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEVGTGTRPYTGKVGAEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L  +  E
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHVVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +  L + + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 177 LLGDVFPEITKDPLSLIQLINEEELQFLKTLTRGRNLLNRTIEKL-NGKVIPGDVAWRL 234


>gi|183011982|gb|ACC37920.1| alanyl-tRNA synthetase [Themira lucida]
 gi|183011988|gb|ACC37923.1| alanyl-tRNA synthetase [Themira pusilla]
          Length = 172

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 102/161 (63%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L
Sbjct: 12  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTERLCL 71

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 72  PKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGETGPCGPC 130

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 131 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 168


>gi|183011974|gb|ACC37916.1| alanyl-tRNA synthetase [Themira arctica]
          Length = 166

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 102/161 (63%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L
Sbjct: 7   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTERLCL 66

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 67  PKDRLYVTYFGGDVASGLEPDLECKQMWTEL-GLKPEHILPGSMKDNFWEMGETGPCGPC 125

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 126 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 163


>gi|255761630|gb|ACU32858.1| alanyl-tRNA synthetase [Dicranosepsis revocans]
          Length = 174

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 101/175 (57%), Gaps = 19/175 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT    L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTXRLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWN 202
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWN
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIWN 174


>gi|259015941|gb|ACV89253.1| alanyl-tRNA synthetase [Nannochorista sp. BMW-2009]
          Length = 198

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/187 (43%), Positives = 115/187 (61%), Gaps = 15/187 (8%)

Query: 91  EMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--DE------DEEAFKLWKK 142
           EMLGN+SFG YFK+   + AW+LLT+ F L   RLY+T +  DE      DEE   +W +
Sbjct: 1   EMLGNWSFGDYFKKEICEWAWELLTQVFKLPGDRLYVTYFGGDEASGLQPDEECRDIWIR 60

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEI 200
           + G+ +  +I  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EI
Sbjct: 61  L-GVPSAHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEI 116

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WNLVF+QF +++      LPK  ID GMG ER+ +V+Q K  NYD D+F  L +A ++ T
Sbjct: 117 WNLVFIQFNRESDSSLKSLPKKHIDCGMGFERLVSVIQNKRANYDTDIFMPLFEAIQKGT 176

Query: 261 GM-KYEG 266
           G  +Y G
Sbjct: 177 GAPQYRG 183


>gi|262301353|gb|ACY43269.1| ala-tRNA synthetase [Hadrurus arizonensis]
          Length = 235

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG       + +    +EIWNLVF+QF ++N      LPK
Sbjct: 1   ETGPCGPCSEIHYDRI----GGRDAKHLVNADVPDVLEIWNLVFIQFNRENDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG-------NNI-VNH 272
             +DTGMGLER+ +V+Q+K++NYD DLF  +  A ++ T  + Y+G       N I + +
Sbjct: 57  KHVDTGMGLERLVSVIQDKSSNYDTDLFVPIFDAIQKATNAIPYQGKVGTEDTNGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ +A      +P     L+P +  
Sbjct: 117 RVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAIRFATEKLNAKPGAFASLVPVVID 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PEL +    I + +  E+ +F KTL RG  LL+  +  LG +++L G++A++L
Sbjct: 177 ILGDVFPELKRDPQAIIDIILDEETQFLKTLSRGQRLLERTIFKLGNEKVLPGEIAWRL 235


>gi|183011998|gb|ACC37928.1| alanyl-tRNA synthetase [Zuskamira inexpectata]
          Length = 180

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 101/164 (61%), Gaps = 14/164 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW  LT+ 
Sbjct: 14  WVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWQFLTER 73

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E  ++W  + GL  + I+     DNFW M ETGPC
Sbjct: 74  LCLPKDRLYVTYFGGDAASGLEPDLECKQIWMDL-GLKPEHILPGNMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           GPCSE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRE 173


>gi|256075153|ref|XP_002573885.1| alanyl-tRNA synthetase [Schistosoma mansoni]
 gi|238659075|emb|CAZ30118.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 1667

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 140/279 (50%), Gaps = 39/279 (13%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
           S+VS +R  F+ FFQ + H ++  +S+ P       F N+GM  FK+IF  Q   +    
Sbjct: 520 SSVSELRREFINFFQSHQHSVVAPASVFPKRHEGSYFINAGMNQFKSIFLNQSDNICSEF 579

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +  T  Q C+R GG+H+DL++VG    HHT FEMLG++SFG Y+K+ A    W  LT
Sbjct: 580 KQLRRATNSQPCIRIGGRHDDLNDVGYDRHHHTMFEMLGSWSFGDYYKKEACSQVWKFLT 639

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET- 166
           +  +L    +YIT +          D+E   +W  + G+   K++      NFW   +  
Sbjct: 640 EVLNLPTNAIYITYFGGDQKLGLPPDDETRDIWLNL-GVMDQKLMPFGIESNFWRANQFS 698

Query: 167 --GPCGPCSEIFF--------DQGECIPGGLPGSSEEGERYIEIWNLVFMQ---FEQQNK 213
             G CGP +E+          DQ +C    +  SS +    +E+WN VF+        + 
Sbjct: 699 GGGLCGPSTEVHIDFKALCGGDQLDCARCLVNTSSPQ---VLELWNCVFITHRIIADNDV 755

Query: 214 QERFILP-------KMSIDTGMGLERMATVLQEKTNNYD 245
            E+ + P       K  +DTGMGLER+A V+Q  T+NYD
Sbjct: 756 TEKHLKPDLLQPLTKSFVDTGMGLERLACVMQGLTSNYD 794



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 100/268 (37%), Gaps = 41/268 (15%)

Query: 514  VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ----------KKAEGIFVHHA----- 558
            +F++T F+   GGQ  DTG        LQ   ++              G  +H       
Sbjct: 1179 IFEKTNFFTSRGGQDADTGFIHYPSKILQFQVIETTFVPDPTSNSSTNGWIIHWCHKPDN 1238

Query: 559  -IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              +    L  + S VL ID + R  L  +H+  HL   AL +++ S  S + +     G 
Sbjct: 1239 LFLSLNNLNFDQSFVLRIDKERRFNLMCSHTGQHLFTSALESLVLSRASNSSAFQHIGGT 1298

Query: 618  RFD--VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT----- 670
                  T    I  +  + +++++ D   Q      +++N    I+     L        
Sbjct: 1299 SHPNYFTLKAAIIGSASELMQEDLGDFTRQLEQKCQKLINENGFISIWNTELAHAIKVKQ 1358

Query: 671  -------KYNDRVRVVSVEYED-----------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
                   +Y+ +VR V +  E              V S+ LCGGTH+    +++ + IV+
Sbjct: 1359 IRYFPWEEYSAKVRTVCITKEKHPFNDHELADFNSVISAELCGGTHLFELSDLLDIAIVA 1418

Query: 713  ESSIRAGIRRIEAITGQRARSHLMGQDE 740
                +  I+    I G  A+S     DE
Sbjct: 1419 VKGRQKTIKEFTCIFGHLAKSAHQCADE 1446



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
           +RV+VDH R+ +F ++DG+LP  +G    +R+++ RA   + L G
Sbjct: 891 YRVLVDHSRALAFALSDGLLPGRQGLPLKIRQLIHRAFRASVLTG 935


>gi|183011978|gb|ACC37918.1| alanyl-tRNA synthetase [Themira flavicoxa]
          Length = 169

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 102/161 (63%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L
Sbjct: 12  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTERLCL 71

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 72  PKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGETGPCGPC 130

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 131 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 168


>gi|319740491|gb|ADV60539.1| ala-tRNA synthetase [Endromis versicolora]
          Length = 235

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGLLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + ++ E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGADDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 177 LLGDVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLDSSKTIPGDIAWRL 235


>gi|145488850|ref|XP_001430428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397526|emb|CAK63030.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1159

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 197/835 (23%), Positives = 329/835 (39%), Gaps = 175/835 (20%)

Query: 18   NGHELLPSSSLIPCND----PTLM-------FTNSGMVPFKNI-FTGQEKPVYQAVTTVQ 65
            NG +   +S+ +PC      P +        +  +G+  F+    TG+  P    +   Q
Sbjct: 302  NGFKKSLTSARVPCTAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQ 361

Query: 66   KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDL 120
             CVR     NDLDN+G T RH++ F MLG  +F       +FKE  ++  +  LT+E ++
Sbjct: 362  FCVR----FNDLDNIGLTGRHYSGFIMLGIQTFNYPEKYVFFKEECVEFNYRWLTEELEI 417

Query: 121  DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            +                                IT  ++ W  A  G  GP  E F +  
Sbjct: 418  NPDD-----------------------------ITFIEDVW--AGGGNLGPSVEYFVN-- 444

Query: 181  ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                 GL           E+ N+VFMQ++  +      LP   IDTG+GLER+  ++   
Sbjct: 445  -----GL-----------EVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLERIPWLINGS 488

Query: 241  TNNYDIDLF---------KHLIQASEQV-------------------------------- 259
              +Y  D+F         K  +Q S +V                                
Sbjct: 489  PTSYH-DVFAGAFAYLSEKLQVQYSNEVWKAFGPYSCLLNVDEIENVDKTWEYISTQIGY 547

Query: 260  --TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                +K E   + +  +I+DH R+   ++ DG LP+N G G  +R I+RR     +   +
Sbjct: 548  DVPTIKKEIEQLKDMYIILDHTRTVMMVVTDGSLPSNVGGGSNIRNIIRRVFAVLKKNSW 607

Query: 318  TEPLMMHLLPALCTE----MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
             E L M  L  L  E    +   Y    + K   +  ++ E ER+ KT D    +    L
Sbjct: 608  WEKLGMDGLLQLFQEHKNDLAKLYGPFGEYKSF-DLIIKQEYERWAKT-DDDKKVKLEKL 665

Query: 374  SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                 +++   D  F +  THG+P D +  I     + G    +    L ++ +R     
Sbjct: 666  LKQKNNQLSIDDWIFAM-STHGIPADTISQI-SKLPIPG----NLYAELADRAARITK-- 717

Query: 434  LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                                A + I Y+ +     + E   +  Q P     N     + 
Sbjct: 718  --------------------APEAILYNTVH----LPETVNLYYQTPKDGKFNAKIVTIF 753

Query: 494  AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            + VQQ  +    +         +Q+ FY   GGQ  D G     G R  + +VQK   G 
Sbjct: 754  SNVQQQNLPNIVI--------LNQSAFYPFGGGQDYDQGWLTIQGERHFVNNVQKV--GK 803

Query: 554  FVHHAIVERGI-----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             V H I+++ +           ++  ID   R  L  +H+ATH++  A   +LG HV QN
Sbjct: 804  VVLH-ILDKPLSDPIDTYVNQEILAEIDLDRRTILRNHHTATHIVFAACRRVLGPHVWQN 862

Query: 609  GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
            G+  + +    D+TH  P+T  + ++IE+ VN II     +    M++ DA       L 
Sbjct: 863  GAHKSVNNAHLDITHFAPLTKEQEQNIENEVNKIILSARQINKGFMSKSDAEKEYGFRLY 922

Query: 669  --GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
              G    + +RVV++E    G+   A C GTH  ST E+  + I+    ++ G+ R+  +
Sbjct: 923  QGGIVPGNELRVVNIE----GIDVEACC-GTHCDSTSEVGWVRILKTQKLQDGVVRLYYV 977

Query: 727  TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             G +    L  + E +  L     +S+  +V    +I++E +  +  +   K +L
Sbjct: 978  AGVKTIEVLNSEGEMINQLVKLWSISKNQLVEEGSKIFQEKKHYETAYNSIKAEL 1032


>gi|321442105|gb|ADW85467.1| ala-tRNA synthetase [Tolype notialis]
          Length = 235

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 137/237 (57%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           +TGPCGPCSE+ +D+ G+     L   + +    +EIWNLVF+QF ++      +LPK  
Sbjct: 1   DTGPCGPCSELHYDRIGDRNAAHL--VNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRV 274
           ID G+GLER+ +V+Q K  NYD D F  L +A E  TG++ Y G   ++        +RV
Sbjct: 59  IDCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEIGTGIRPYSGKVGIDDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +
Sbjct: 119 LADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLIYTVVELL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G+ +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 179 GNIFPEIKKDPDSIVQLINEEELQFLKTLLRGRNLLNRTIEKLTNTKTIPGDIAWRL 235


>gi|321442051|gb|ADW85440.1| ala-tRNA synthetase [Atteva punctella]
          Length = 235

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+  D+     GG   +   + +    +EIWNLVF+Q+ +++     +LPK
Sbjct: 1   ETGPCGPCSELHXDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q+K  NYD D F  + +  E+ TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQDKRANYDTDFFMPIFKVIEKGTGVRPYMGKVGAEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 177 ILGDVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTMDKLNDSKIVPGDVAWRL 235


>gi|296115011|ref|ZP_06833655.1| alanyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978473|gb|EFG85207.1| alanyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 266

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 102/266 (38%), Positives = 160/266 (60%), Gaps = 16/266 (6%)

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG-GVHSSALCGGTHVS 700
           I +N  V TR M  ++AI  GA AL G KY D VRVVS+   EDG    S  LCGGTHV 
Sbjct: 3   IRENTEVTTRHMTPDEAIEQGAMALFGEKYGDEVRVVSMGGPEDGRAAWSIELCGGTHVR 62

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG+I L  I +E+ + +G+RRIEA+TG+ A +  +  +++L  +A+ ++V+      R+
Sbjct: 63  RTGDIGLFRITAENGVSSGVRRIEAVTGKAAETAAVTTEQRLFQMAAMMRVTPAEAPERL 122

Query: 761 EEIWEEYRKL--QLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             + EE R +  QL   +RKL         VED     +A  +F++  + ++  KELK +
Sbjct: 123 AALLEERRVMERQLSDLQRKLAAGGDGTPKVED-----VAGTSFVARNVGDLPPKELKPL 177

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            D+L+K+I SG++ LV  + + K S+++ VT D  ++ +AV L R+++  +GG GGGGR 
Sbjct: 178 ADSLRKEIGSGVVALVS-TADGKGSIVVAVTTDRAEQVDAVALVRIASPAMGGKGGGGRR 236

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            MAQ+GGP+ +KA  A+  + + L +
Sbjct: 237 DMAQAGGPDISKAQAALDAIRAALPQ 262


>gi|183011920|gb|ACC37889.1| alanyl-tRNA synthetase [Dicranosepsis papuana]
          Length = 168

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPIFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICTWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|289524521|ref|ZP_06441375.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502239|gb|EFD23403.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 244

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ+GD G       +L++ D     + +  H   V+ G +  +      +D 
Sbjct: 1   TPFYAEKGGQVGDKGWIETSTGKLEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDL 60

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  +H++TH++H AL+ +LG H+ Q GS ++P+  RFD TH   I+  ++  IE 
Sbjct: 61  SRRNAIRRHHTSTHIVHEALTRVLGPHIRQAGSYVSPNYFRFDFTHFDAISRDDIVKIEQ 120

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N++I  N+ +     + E+A   GA A    KY DRVRV+ +       + + LCGG 
Sbjct: 121 IANEVIQANIKLNIFETSMEEAKKIGAKAFFDEKYGDRVRVIQIP-----GYCAELCGGL 175

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV++TG+I L+ IV E SI +G+RRI A+ G  A SH     + +K L     V  G++ 
Sbjct: 176 HVNATGDIGLIKIVEEESIGSGLRRITALAGMAAVSHYQELFDLVKDLTLISGVEAGSLK 235

Query: 758 GRVEEIWEE 766
            +  +++++
Sbjct: 236 EKFTDVFQD 244


>gi|183011946|gb|ACC37902.1| alanyl-tRNA synthetase [Saltella sphondylii]
          Length = 182

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 106/180 (58%), Gaps = 19/180 (10%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPFFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +        + D E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
               DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 120 GNMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 176


>gi|183011956|gb|ACC37907.1| alanyl-tRNA synthetase [Sepsis fulgens]
 gi|183011964|gb|ACC37911.1| alanyl-tRNA synthetase [Sepsis orthocnemis]
 gi|183011970|gb|ACC37914.1| alanyl-tRNA synthetase [Sepsis violacea]
          Length = 168

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|183011952|gb|ACC37905.1| alanyl-tRNA synthetase [Sepsis duplicata]
          Length = 165

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 122 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 158


>gi|183011948|gb|ACC37903.1| alanyl-tRNA synthetase [Sepsis biflexuosa]
          Length = 168

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEGSGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|183011924|gb|ACC37891.1| alanyl-tRNA synthetase [Lasionemopoda hirsuta]
          Length = 170

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTXL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|164503892|gb|ABY59256.1| alanyl-tRNA synthetase [Hemigephyra atra]
          Length = 183

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 104/174 (59%), Gaps = 14/174 (8%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT  
Sbjct: 14  WVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDR 73

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L   RLY+T +        + D E  ++W  + G+  + I+  +  DNFW M ETGPC
Sbjct: 74  LKLPSDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKPEHILPGSMKDNFWEMGETGPC 132

Query: 170 GPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           GPCSE+ FD+  G  +P  +   + +    +E+WNLVF+Q+ ++       LPK
Sbjct: 133 GPCSELHFDRIGGRSVPELV---NMDDPDVLEVWNLVFIQYNREQDGSLKQLPK 183


>gi|183011966|gb|ACC37912.1| alanyl-tRNA synthetase [Sepsis punctum]
          Length = 159

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|183011954|gb|ACC37906.1| alanyl-tRNA synthetase [Sepsis flavimana]
          Length = 168

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICTWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|183011930|gb|ACC37894.1| alanyl-tRNA synthetase [Microsepsis furcata]
          Length = 166

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G  +P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTAEPNSEMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+     DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGXMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|183011938|gb|ACC37898.1| alanyl-tRNA synthetase [Paratoxopoda amonane]
          Length = 151

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/154 (47%), Positives = 96/154 (62%), Gaps = 14/154 (9%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 2   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLCL 61

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 62  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 120

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLV 204
           SE+ FD+  G  +P  +   + +    +EIWNLV
Sbjct: 121 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLV 151


>gi|259015925|gb|ACV89246.1| alanyl-tRNA synthetase [Halictophagidae sp. BMW-2009]
          Length = 201

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 12/185 (6%)

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKL 139
           TFFEMLGN+SFG YFK+     AW  L     L++ RLY+T +          D E  ++
Sbjct: 1   TFFEMLGNWSFGDYFKKEVCHWAWQYLVDVLKLEKDRLYVTYFAGDSKSQLKPDYEVQEI 60

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYI 198
           WK+I G+    II  +  DNFW M ETGPCGPCSEI FD+ G      L   +++    +
Sbjct: 61  WKQI-GIDDSHIIPGSMKDNFWEMGETGPCGPCSEIHFDRIGNRNAADL--VNQDDPDVL 117

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           E+WNLVF++F + +  +   LPK  +DTGMGLER+ +++Q K +NYD DLF  +      
Sbjct: 118 EVWNLVFIEFNRDSSGQLHSLPKKHVDTGMGLERLVSIMQNKRSNYDTDLFTPIFDEICA 177

Query: 259 VTGMK 263
            TG +
Sbjct: 178 KTGTR 182


>gi|183011910|gb|ACC37884.1| alanyl-tRNA synthetase [Dicranosepsis distincta]
          Length = 173

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 94/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 159


>gi|183011942|gb|ACC37900.1| alanyl-tRNA synthetase [Saltella bezzii]
          Length = 177

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLCL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W  + GL  + I+     DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILPGNMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 136 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 173


>gi|183011968|gb|ACC37913.1| alanyl-tRNA synthetase [Sepsis thoracica]
          Length = 168

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 93/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEXSGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+     DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|183011960|gb|ACC37909.1| alanyl-tRNA synthetase [Sepsis lateralis]
          Length = 159

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 93/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+     DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 123 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 159


>gi|183011900|gb|ACC37879.1| alanyl-tRNA synthetase [Australosepsis niveipennis]
 gi|183011962|gb|ACC37910.1| alanyl-tRNA synthetase [Sepsis neocynipsea]
          Length = 168

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 93/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+     DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 156


>gi|183011990|gb|ACC37924.1| alanyl-tRNA synthetase [Themira putris]
          Length = 173

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 100/161 (62%), Gaps = 14/161 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S G YFK      AW+ LT+   L
Sbjct: 13  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSXGDYFKREICTWAWEFLTERLCL 72

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W ++ GL  + I+     DNFW M ETGPCGPC
Sbjct: 73  PKDRLYVTYFGGDEASGLEPDLECKQIWTEL-GLKPEHILPGNMKDNFWEMGETGPCGPC 131

Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           SE+ FD+  G  +P  +   + +    +EIWNLVF+QF ++
Sbjct: 132 SELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRE 169


>gi|183011898|gb|ACC37878.1| alanyl-tRNA synthetase [Australosepsis frontalis]
          Length = 173

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 100/175 (57%), Gaps = 19/175 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPXFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWN 202
            I+     DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWN
Sbjct: 122 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIWN 173


>gi|321442061|gb|ADW85445.1| ala-tRNA synthetase [Cyclotorna sp. JCR-2011]
          Length = 235

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 136/237 (57%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ G      L    +     +EIWNLVF+QF ++      +LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGNRDAAHLVNMDDPD--VLEIWNLVFIQFNRETDGTLKLLPKRH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q K  NYD DLF  L +A E+ T M+     +         + +RV
Sbjct: 59  IDCGLGLERLISVIQNKRANYDTDLFIPLFKAIEKGTSMRPYSGKVGKEDIDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-M 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L  +  E +
Sbjct: 119 LADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYACEKLNAKPGFFGSLVNVVVEIL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I ET+  E+ +F KTL RG  LL+  +  L   +I++GDVA++L
Sbjct: 179 GEVFPEIKKDPKSIIETINEEEIQFLKTLLRGRNLLNRTIDKLNSSKIVSGDVAWRL 235


>gi|296242680|ref|YP_003650167.1| alanyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296095264|gb|ADG91215.1| alanyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 908

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 198/894 (22%), Positives = 368/894 (41%), Gaps = 176/894 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F    GH ++    ++      L    + ++ F+   T G   P +  +
Sbjct: 59  SLQEVREKFINFLVSKGHGVVDPYPVLARWRNDLYLNIASIIVFQPAVTEGIVDPPHNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R     +D+DNVG T  RH T FEM G  +F       Y+ E  I    +   
Sbjct: 119 VIIQPSIRL----SDIDNVGLTFGRHLTSFEMGGMHAFNKPGKMIYWVEGIIDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D   L           FK                   + +W     G  GP  E+
Sbjct: 175 KEIGIDLEDL----------VFK-------------------EGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL-PKMSIDTGMGLERMA 234
             D                   +E+  LV M ++  +   ++I  P + +D G G+ER+ 
Sbjct: 204 LVDG------------------MELATLVHMMYKTVDG--KYIENPVLVVDCGYGIERIT 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV------------------ 276
              Q+    +   ++  L+   + V G++   ++++   V +                  
Sbjct: 244 WFTQKSPTGFHA-IYGRLVDEYKDVLGVEEPPHDVLKKAVYLLSDKELNSVAEYVKALEE 302

Query: 277 --------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                               DH+R+ S +++DGI+P+N G GY+ R ++RR       LG
Sbjct: 303 YGFSEHTASFTKIIYLYGSLDHVRTISLMLSDGIVPSNSGEGYLARLVLRRLFRNLVNLG 362

Query: 317 YTEPLMMHLLPALCTEM------GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
                +  ++  L  +          Y +  + +  I + +  E  +F  ++ RG+ ++D
Sbjct: 363 VESNKLADIVQELVDKQIKYWKNDYIYGKFEKHRDYILDVVALEANKFVDSVYRGVEIVD 422

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
               +L + + L  +   ++YD+HG+P + +  +  ARG  G+++        +   R  
Sbjct: 423 ---KYLKRKKALGEEDLIEIYDSHGIPPEFV--VERARG-KGVEVRVPGDFYSKIAQRHS 476

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
           A  L             +KEK         +L + ++   E  +V  Q P       +++
Sbjct: 477 AAPL-------------VKEK---EHEFPEELAKWAEGFPETVRVFHQDP---YATSINA 517

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            V  ++                V+ D+T  Y  AGGQ  DTG  + +G    +  V K  
Sbjct: 518 KVLGVLGN-------------YVILDRTIMYPWAGGQDHDTGVLVFNGKAYPVKYVGKIG 564

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G+ VH  + E+   +    + + I++  R +L  +H+ATH++  A   ILG HV Q G+
Sbjct: 565 -GVIVHE-LEEKPGFKPGDEVEVKIEWFRRYRLMRHHTATHVVLAAARKILGDHVWQAGA 622

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
             T +  R D+TH KP+T  E+  IE+  N II   + +    M + +A +     +   
Sbjct: 623 EKTVEKGRLDITHHKPLTRKEIAEIEELANKIIDSRIQLRFNYMGKFEAESKYGLKIYQG 682

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G  Y+  +R+V +   D     +  C GTH+ +T EI  + I++   I+ G+ R+E + G
Sbjct: 683 GAVYSPVLRIVEIPGWD-----AQACFGTHLQNTAEIGGVKIINAERIQDGVIRLEFVAG 737

Query: 729 QR----ARSHLMGQDEKLKSLASFLK---VSQGNV---VGRVEEIWEEYRKLQLIHAKRK 778
            R    AR+    +++ L+++ S  K   V+ G +   + R+EE    YR++ L  A   
Sbjct: 738 TRLAELARNMEEEREKALEAMGSPHKDIVVAAGKLRESLSRLEETVATYRRI-LADALVS 796

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
             LN + + C        +   ++E    D K +K+V++ L  K ++  ++  G
Sbjct: 797 NALNTKRVVCG-------VETTLAETPVEDEKLVKTVLEDLSLKHKTLAVVFTG 843


>gi|262301387|gb|ACY43286.1| ala-tRNA synthetase [Phrynus marginemaculatus]
          Length = 235

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 139/242 (57%), Gaps = 23/242 (9%)

Query: 165 ETGPCGPCSEIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI 218
           ETGPCGPCSEI FD+       + +   LP         +EIWNLVF+QF +++      
Sbjct: 1   ETGPCGPCSEIHFDRIGGRDAKDLVNADLPD-------VLEIWNLVFIQFNRESDGSLKP 53

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------- 269
           LPK   DTGMGLER+ +V+Q K++NYD DLF  +  A ++ TG +     +         
Sbjct: 54  LPKKHXDTGMGLERIVSVIQNKSSNYDTDLFVPIFDAIQKATGTRPYSGKVGKEDEDGID 113

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPA 328
           + +RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P M   L+P 
Sbjct: 114 MAYRVLADHARTLTVALSDGGRPDNTGRGYVLRRILRRAIRYATEKLNGKPGMFATLVPI 173

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           +   +G  +PEL +    + + +  E+ +F KTL RG  LL+  ++ +G   +L GDVA+
Sbjct: 174 VVDLLGDIFPELKKDPQTVIDIITDEENQFLKTLTRGRKLLERTINKMGDLTVLPGDVAW 233

Query: 389 KL 390
           +L
Sbjct: 234 RL 235


>gi|319740497|gb|ADV60542.1| ala-tRNA synthetase [Mirina christophi]
          Length = 235

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 133/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  +  + E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFASIENGTGVRPYSGKVGAEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 177 LLGDVFPEIKKDPDSIIQLIDEEEIQFLKTLCRGRNLLNRTIEKLDNSKTIPGDIAWRL 235


>gi|157813828|gb|ABV81659.1| putative AATS-ALA protein [Narceus americanus]
          Length = 235

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 146/238 (61%), Gaps = 15/238 (6%)

Query: 165 ETGPCGPCSEIFFDQGECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           +TGPCGPC+EI +D+   I G    P  + +    +EIWNLVF+QF ++N     +LPK 
Sbjct: 1   DTGPCGPCTEIHYDR---IGGRDAAPLVNADVPDVLEIWNLVFIQFNRENDGSLRVLPKK 57

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHR 273
            +DTGMGLER+ +V+Q KT+NY+ D F  +  A ++ TG + Y+G           + +R
Sbjct: 58  HVDTGMGLERVVSVIQNKTSNYETDCFMPIFDAIQKATGCRTYQGLLGAEDVDGVDMAYR 117

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM-HLLPALCTE 332
           V+ DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+    ++EP M+  L+  +   
Sbjct: 118 VVADHIRTLTIALSDGGRPDNVGRGYVLRRILRRAIRYSTEKLHSEPGMLASLVDVVIDT 177

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           +G  + EL +    +++ +  E+ +F KTL RG  LL+  ++ L   +IL GD+A++L
Sbjct: 178 LGDMFVELKKDPQSVKDIIIEEEAQFLKTLSRGQRLLERTINKLSDQKILPGDIAWRL 235


>gi|258616276|ref|ZP_05714046.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 147

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 94/150 (62%), Gaps = 8/150 (5%)

Query: 1   MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +SS  +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGL 146
               D  +LY+TVY +D EA ++W +  GL
Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGL 146


>gi|183011950|gb|ACC37904.1| alanyl-tRNA synthetase [Sepsis coprophila]
          Length = 170

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 93/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERXGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+     DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 122 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 158


>gi|321442067|gb|ADW85448.1| ala-tRNA synthetase [Euclea delphinii]
          Length = 235

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 132/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   DTGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETGGALSLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +A E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKKANYDTDFFMPLFKAIEIGTGARPYSGKVGPEDTDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y       +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGHPDNTGRGYVLRRILRRAVRYTTEKLNGKPGFFGSLVHTVVQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 177 LLGDVFPEIKKDPESIIHIINEEELQFLKTLTRGRNLLNRTIEKLSDKKIVPGDVAWRL 235


>gi|168700524|ref|ZP_02732801.1| alanyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 425

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 197/399 (49%), Gaps = 19/399 (4%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +G    ++ D+T FYAE GGQ+GDTG        G   ++ D Q+  E +  H   +  G
Sbjct: 17  AGDSAALLLDRTNFYAEQGGQVGDTGTIDRPGTAGAEFEVEDTQRLGETVL-HVGALLAG 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+    + L      R  +  NH+ATHLL+ AL  +LG HV Q GS +  +  RFD +H
Sbjct: 76  ELKVGDRVTLQQTTTRRIDVMRNHTATHLLNLALREVLGHHVEQKGSLVDEEKTRFDFSH 135

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE 682
            KP+T+ EL+ IE  VN  +  +  V  + M    A    G  A+ G KY D VRVV + 
Sbjct: 136 DKPVTAEELREIERRVNRQVVLDQVVTAQTMPLAQAKGLPGVRAVFGEKYPDPVRVVMIG 195

Query: 683 YEDGGV----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
            E         S   CGGTH+  TG I    IVS+  +  GIRRI A+TG+ A   +  +
Sbjct: 196 AEAPEKVTQDMSVEFCGGTHLPRTGTIGYFKIVSQEGVAKGIRRITAVTGKPAYEDVQTR 255

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNF 796
              +  LA   +     +  RV  + E+ +  + QL  A       V D       DV  
Sbjct: 256 SAIVDELAGTFQCRPDELPTRVGALQEQLKAAQAQLKKAVAAALTGVVDELIASAPDVGG 315

Query: 797 MSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI-VVTEDLLDR-F 850
              +++++     ++ +++ +D +++K  S  ++  G S+  +++ LI  +T DL+ +  
Sbjct: 316 SKVVVAKLPDGASNETVRTQIDRVKQKCGSAFVVF-GWSEGPESAFLIAALTPDLVKKGL 374

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            A D+ +  A V+ GGGGGG+P  AQ+GG    K  +A+
Sbjct: 375 KAGDVVKQVAPVI-GGGGGGKPEQAQAGGKEPAKLPEAL 412


>gi|321442043|gb|ADW85436.1| ala-tRNA synthetase [Apoda biguttata]
          Length = 235

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 134/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLSLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------H 272
             ID G+GLER+ +V+Q K  NYD D F  L +A +  TG++ Y G   V         +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFEAIQIGTGVRPYSGKVGVEDTDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVHTVVK 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 177 LLGDVFPEIKKDPESIIHIIDEEEIQFLKTLSRGRNLLNRTIEKLNNSKTVPGDLAWRL 235


>gi|157813834|gb|ABV81662.1| putative AATS-ALA protein [Thulinius stephaniae]
          Length = 235

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 140/237 (59%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPC+EI FD+ G      L   +++    +EIWNLVF+QF ++      +LP+  
Sbjct: 1   ETGPCGPCTEIHFDRIGNRDASQL--VNQDDPDVLEIWNLVFIQFNREADGSLSLLPRKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           IDTGMG ER+ +V+Q K +NYD D+F  +  A E+ TG +     I         + +RV
Sbjct: 59  IDTGMGFERLVSVVQNKRSNYDTDVFVPIFAAIEKGTGSRPYTGKIGAEDVDKVDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH+R+    ++DG  P N GRGYVLRRI+RRA+ YA+     +P  +  L+P +   +
Sbjct: 119 VADHIRNLVIALSDGGRPDNVGRGYVLRRILRRAIRYAKEKLNAKPGFLSGLVPQVSETL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G A+PE+ +    +   +  E+ +F +TL RG  LL+  ++ +G  + L GDVA++L
Sbjct: 179 GEAFPEVKKDPETVARIIEEEESQFLRTLTRGRRLLERTIAQMGDCKTLPGDVAWRL 235


>gi|319740501|gb|ADV60544.1| ala-tRNA synthetase [Oberthueria formosibia]
          Length = 235

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 133/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKQLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L ++ E  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPLFKSIEIGTGVRPYSGKVGPDDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVHTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 177 LLGGVFPEIKKDPESIIQLINEEEIQFLKTLSRGRSLLNRTMEKLDGSKTIPGDIAWRL 235


>gi|257076158|ref|ZP_05570519.1| alanyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 891

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 196/847 (23%), Positives = 344/847 (40%), Gaps = 186/847 (21%)

Query: 3   NVSSIRTTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQ 59
           ++  +R  FL FF+++   H ++    ++P     ++  N+ +  F+  + +G   P   
Sbjct: 59  SLDEMRQEFLSFFKEDKLPHTIIEKYPVVPRWRDDVLLVNASIYDFQPQVTSGLVPPPGN 118

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      DLD VG+T RH T FEML + +F       Y+K   I+ ++  L
Sbjct: 119 PLAMSQPSIRML----DLDLVGKTGRHLTSFEMLCHDAFNYENKYIYWKNETIEYSYRFL 174

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T++  +D                                IT  +  W     G  G   E
Sbjct: 175 TEKLHVDG-----------------------------AEITYKEKPWFGG--GNAGNAVE 203

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTG 227
           +F                   R +E+  LVFM  ++    E  I       +P   +DTG
Sbjct: 204 VFV------------------RGLEVATLVFMDMKEDPDGEIDIEGTKYSMMPLKIVDTG 245

Query: 228 MGLERMATV------------------LQEKTNNYDID--LFKHLIQASEQV-------- 259
            GLER+  +                  +++ ++  DID  + + L + S ++        
Sbjct: 246 YGLERLVWLSTGTPTVYESILGETIEYIRKNSSAGDIDPEIMQKLSELSAEIDPYSESKL 305

Query: 260 -----TGMKYEGNNIVNHRV-----------IVDHLRSSSFLIADGILPANEGRGYVLRR 303
                  +K +  +I N  +           + DH ++   + AD ++P+N   GY+ R 
Sbjct: 306 LKQVAPWLKKKHISIDNEFLRRLKSFRSLYSLADHTKTLLLMFADYVIPSNVKVGYLART 365

Query: 304 IMRRAMCYARLLGYTEPLM--MHLLPALCTEMGSAYP-ELIQAKLLIEETLRSEDERFGK 360
           ++RR++ +   + +++  M  M     + + + S Y  + I+  + IE+   +E  +  +
Sbjct: 366 LVRRSLKFMDDISFSKDFMDLMDFQHEIFSRIVSNYDRDFIKNIIDIEKEKYAEINKSAE 425

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
              R  +       H GK E+ N   A  LYD+ G+  D++ +    + + G D+   + 
Sbjct: 426 GKVRKYI-------HSGKLELKN---AITLYDSEGMNEDLISE--SFKKITGKDLELPDN 473

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
             E   SR                     +K  A QF                       
Sbjct: 474 FQEIVISRHETRH---------------TKKKEAPQFPP-----------------VHTR 501

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
           P+   N   S    IV          SG+K  ++ +QT FY E GGQ  D G  I +G +
Sbjct: 502 PLYYDNTKISEFTGIV--------LYSGEKC-IIPNQTAFYPEGGGQPCDLGYFIANGKK 552

Query: 541 LQITDVQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + DVQK  + I  F+ + I     ++        IDY  R+QL I+HSATHLL   + 
Sbjct: 553 VNVVDVQKYNDSIVHFLDNNIPANSRVKG------YIDYTRRKQLMIHHSATHLLLGIMR 606

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
              G HV Q+G     +  R D+TH + IT  +++ IED   + I Q+  +    ++   
Sbjct: 607 KYFGEHVWQSGVKKDINESRIDITHYRKITLEDIRHIEDMCMEAIEQDRKITVSNVSWNP 666

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI      L   G   + ++R+V+++    G+ S   CGGTH+ ST  I  + I+   ++
Sbjct: 667 AIEKYGFRLFEGGVPVSSKIRIVTID----GIDSEG-CGGTHLDSTAPIGFIKIMKVETL 721

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE---EYRKLQLI 773
           + GI+RI    G  A  ++    + ++    +LKV   +V  +  EI+    E RKL   
Sbjct: 722 QEGIQRITYSAGPAAMRYVQLLHDTVQMEQEYLKVDTEDVYRQSLEIFHENLENRKLIDK 781

Query: 774 HAKRKLQ 780
           + K K++
Sbjct: 782 YRKEKIE 788


>gi|183011902|gb|ACC37880.1| alanyl-tRNA synthetase [Decachaetophora aeneipes]
          Length = 158

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 91/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPVFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQMWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+  +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDR 152


>gi|289803192|ref|ZP_06533821.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 296

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 148/242 (61%), Gaps = 12/242 (4%)

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NLP+ T IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+
Sbjct: 2   RNLPIETNIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGD 56

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + 
Sbjct: 57  IGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVL 116

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKK 819
           E  R+L+    + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ +
Sbjct: 117 ERTRQLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQ 176

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + S +I+L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG
Sbjct: 177 LGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGG 234

Query: 880 PN 881
            +
Sbjct: 235 TD 236


>gi|321442077|gb|ADW85453.1| ala-tRNA synthetase [Lacturidae gen. sp. JCR-2011]
          Length = 235

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG K     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEIGTGAKPYSGKVGAEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGYPDNTGRGYVLRRILRRGVRYATEKLNAKPGFFASLVHTVVQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I E +  E+ +F KTL RG  LL+  +  LG  +++ GD+A++L
Sbjct: 177 LLGDVFPEIKKDPESIIEIINEEEIQFLKTLIRGRNLLNRTIEKLGSLKVIPGDLAWRL 235


>gi|183011904|gb|ACC37881.1| alanyl-tRNA synthetase [Dicranosepsis cf. parva RM-2008]
          Length = 173

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 93/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPXFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 159


>gi|183011908|gb|ACC37883.1| alanyl-tRNA synthetase [Dicranosepsis crinita]
          Length = 171

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 93/157 (59%), Gaps = 16/157 (10%)

Query: 43  MVPFKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPXFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIP 184
            I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVP 159


>gi|321442079|gb|ADW85454.1| ala-tRNA synthetase [Lagoa crispata]
          Length = 235

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 132/239 (55%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++       LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E+ TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEEGTGTRPYTGKVGAEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKSGFFASLVYTVVA 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L    I+ GD+A++L
Sbjct: 177 LLGDVFPEIKKDPESIIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNTNIVPGDLAWRL 235


>gi|321442099|gb|ADW85464.1| ala-tRNA synthetase [Synemon plana]
          Length = 235

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 134/237 (56%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ G+     L   + +    +EIWNLVF+QF ++      +LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGDREAAHL--VNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q K  NYD D F  L +A +  TG++     +         + +RV
Sbjct: 59  IDCGLGLERLVSVIQNKRANYDTDFFMPLFKAIQAGTGVRSYTGKVGAEDVDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +   +
Sbjct: 119 LADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVNTVVEIL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 179 GDVFPEIKKDPKSIIQIINEEEIQFLKTLSRGRNLLNRTIDRLNDSKTIPGDIAWRL 235


>gi|321442057|gb|ADW85443.1| ala-tRNA synthetase [Chelepteryx collesi]
          Length = 235

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSE+ +D+ GE     L   + +    +EIWNLVF+QF +++      LPK  
Sbjct: 1   ETGPCGPCSELHYDRIGERDAAHL--VNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRV 274
           ID G+GLER+ +V+Q K  NYD D F  + ++ E  TG++     +         + +RV
Sbjct: 59  IDCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGTDDMDGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RR + YA      +P     L+  +   +
Sbjct: 119 LADHARTLTIALSDGGYPDNTGRGYVLRRILRRGVRYASEKLNAKPGFFGSLVYKVVELL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 179 GDVFPEIRKDPESIIQLINEEEIQFLKTLCRGRNLLNRTIDKLDTSKTIPGDIAWRL 235


>gi|321442049|gb|ADW85439.1| ala-tRNA synthetase [Argyrotaenia alisellana]
          Length = 235

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 135/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++      LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGRNAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLRPLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  + +A E  TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFVPIFKAIEVGTGTRPYSGKVGDEDVDGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVHTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I ET+  E+ +F KTL RG  LL+  +  LG  + + G+VA++L
Sbjct: 177 ILGDVFPEIKKDPESIIETINEEEIQFLKTLTRGRNLLNRTIEKLGDSKTVPGEVAWRL 235


>gi|262301389|gb|ACY43287.1| ala-tRNA synthetase [Pedetontus saltator]
          Length = 235

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 142/239 (59%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSE+ FD+     GG   +S   ++    +EIWNLVF+QF +++      LPK
Sbjct: 1   DTGPCGPCSELHFDR----IGGRNAASLVNQDDPNVLEIWNLVFIQFNRESDGSLKNLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNH 272
             ID G+GLER+ +V+QEKT+NYD D+F  + +A E+ TG   Y G       + I + +
Sbjct: 57  KHIDCGLGLERLISVIQEKTSNYDTDVFGPIFKAIEKGTGAPPYRGRVGAEDTDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA  YA      +P     L     E
Sbjct: 117 RVLADHARTITIALSDGGHPDNTGRGYVLRRILRRAXRYATEKLNAKPGFFATLVTTVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    + + +  E+++F KTL RG  LL+  ++ LG  + + GDVA+++
Sbjct: 177 LLGDTFPEVRKDPQYVMDVINDEEDQFLKTLSRGRNLLNRTIAKLGGSQTVPGDVAWRM 235


>gi|183011918|gb|ACC37888.1| alanyl-tRNA synthetase [Dicranosepsis olfactoria]
          Length = 148

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/134 (50%), Positives = 86/134 (64%), Gaps = 11/134 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 13  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLAL 72

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 73  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGPC 131

Query: 173 SEIFFDQ--GECIP 184
           SE+ FD+  G  +P
Sbjct: 132 SELHFDRIGGRSVP 145


>gi|205374234|ref|ZP_03227033.1| alanyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 153

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 92/144 (63%), Gaps = 6/144 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+FFQ+ GH + PS+SL+P  DPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMYLDFFQEKGHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGSVVPDNPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122
           QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT E     D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDWAWEFLTSEKWIGFDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGL 146
            +L +TV+ ED EA+ +WK   G+
Sbjct: 123 EKLSVTVHPEDHEAYDMWKNDIGV 146


>gi|183011888|gb|ACC37873.1| alanyl-tRNA synthetase [Archisepsis diversiformis]
          Length = 154

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/134 (50%), Positives = 85/134 (63%), Gaps = 11/134 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 20  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLGL 79

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPC
Sbjct: 80  PKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPC 138

Query: 173 SEIFFDQ--GECIP 184
           SE+ FD+  G  +P
Sbjct: 139 SELHFDRIGGRSVP 152


>gi|183011914|gb|ACC37886.1| alanyl-tRNA synthetase [Dicranosepsis hamata]
          Length = 149

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 89/146 (60%), Gaps = 14/146 (9%)

Query: 47  KNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPVFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQ 179
            +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 GSMKDNFWEMGETGPCGPCSELHFDR 145


>gi|326676062|ref|XP_003200495.1| PREDICTED: hypothetical protein LOC100535229 [Danio rerio]
          Length = 1296

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 128/241 (53%), Gaps = 38/241 (15%)

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFM 206
           +I+  +  DNFW M +TGPCGPCSEI +D+     GG   +   S      +EIWNLVF+
Sbjct: 638 RILPGSMKDNFWEMGDTGPCGPCSEIHYDRI----GGRDAAHLVSMNDPNVLEIWNLVFI 693

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF ++++     LPK SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG +   
Sbjct: 694 QFNRESETVLKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYT 753

Query: 267 NNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
             +         + +RV+ DH R+ +  + DG  P N GRG                   
Sbjct: 754 GKVGAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGRG------------------- 794

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
             P  M LL  + +  G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG
Sbjct: 795 --PTEM-LLFGISSGQGDAFPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLG 851

Query: 378 K 378
           +
Sbjct: 852 E 852



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNL 203
           +I+  +  DNFW M +TGPCGPCSEI +D      GG   +   + +    +EIWNL
Sbjct: 60  RILPGSMKDNFWEMGDTGPCGPCSEIHYDHI----GGRDAAHLVNMDDPNKLEIWNL 112



 Score = 44.3 bits (103), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 28/37 (75%)

Query: 7  IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGM 43
          IR  F++FF+ + H+ + SS+ IP +DPTL+F N+GM
Sbjct: 10 IREKFIDFFRCHEHQYVHSSATIPLDDPTLLFANAGM 46


>gi|262301379|gb|ACY43282.1| ala-tRNA synthetase [Orchesella imitari]
          Length = 236

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 139/240 (57%), Gaps = 18/240 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +TGPCGPCSEI FD+     GG   +   +++    +E+WNLVF+QF +++      LPK
Sbjct: 1   DTGPCGPCSEIHFDR----IGGRNAADLVNQDDPDVLEVWNLVFIQFNRESDGTLKSLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID GMGLER+ +V+Q+K +NYD DLF  +  A ++ TG +     +         + +
Sbjct: 57  KHIDCGMGLERIVSVIQQKRSNYDTDLFVPIFDAIQKATGARTYTGKVGXEDSDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG       +L+  +  
Sbjct: 117 RVVADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGIRYAIEKLGGKPGTFANLVDVVVQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKL 390
            +G  +PE  +    I + +  E+ +F KTL+RG  LL+  +S L   E  L GDVA++L
Sbjct: 177 ILGDTFPEXQKDPHSIMDVINEEEAQFLKTLNRGRSLLERTVSKLSPTEKTLPGDVAWRL 236


>gi|189531576|ref|XP_001922082.1| PREDICTED: hypothetical protein LOC559142 [Danio rerio]
          Length = 725

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 133/248 (53%), Gaps = 37/248 (14%)

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEI 200
           +G++  +I+  +  DNFW M +TGPCGPCSEI +D+     GG   +   + +    +EI
Sbjct: 44  AGMNQSRILPGSMKDNFWEMGDTGPCGPCSEIHYDRI----GGRDAAHLVNMDDPNELEI 99

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WNLVF+QF ++++     L K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ T
Sbjct: 100 WNLVFIQFNRESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGT 159

Query: 261 GMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           G +     +         + +RV+ DH R+ +  + DG  P N GRG +           
Sbjct: 160 GARAYTGKVSAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGRGLL----------- 208

Query: 312 ARLLGYTEPLMMHLLPALCT-EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
              LG+        +   CT   G A+PEL +   ++++ +  E+ +F KTL RG  +LD
Sbjct: 209 --SLGFA-------VECTCTVARGDAFPELRKDPYMVKDIINEEEAQFLKTLSRGRRILD 259

Query: 371 GVLSHLGK 378
             +  LG+
Sbjct: 260 RKIQSLGE 267



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 29/37 (78%)

Query: 7  IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGM 43
          IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM
Sbjct: 10 IREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGM 46


>gi|330798390|ref|XP_003287236.1| hypothetical protein DICPUDRAFT_151319 [Dictyostelium purpureum]
 gi|325082755|gb|EGC36227.1| hypothetical protein DICPUDRAFT_151319 [Dictyostelium purpureum]
          Length = 183

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 92/137 (67%), Gaps = 11/137 (8%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70
           FL +F+ N  + LPSSSLIP ND TL+FTN+GMV FKN FT  E+  Y+ VTT QKCVRA
Sbjct: 4   FLNYFETNKRKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTALEESKYKLVTTSQKCVRA 63

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           GG  NDL+NVG T RHHTFFEML            +IQ AW+LLTK+F L + RL I+V 
Sbjct: 64  GGNQNDLENVGYTARHHTFFEMLD-----------SIQQAWNLLTKDFGLPKERLAISVL 112

Query: 131 DEDEEAFKLWKKISGLS 147
           + DE   KL  ++  LS
Sbjct: 113 EGDEGEVKLGFQMIKLS 129



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 4/47 (8%)

Query: 217 FILPKMSI---DTGMGLERMATVLQEKTNNYDIDLFKHLIQA-SEQV 259
           F + K+SI   DTG+GLERMATVLQEKT NYDIDLF++LI +  EQV
Sbjct: 123 FQMIKLSIPCVDTGLGLERMATVLQEKTTNYDIDLFQNLINSFKEQV 169


>gi|183011984|gb|ACC37921.1| alanyl-tRNA synthetase [Themira minor]
          Length = 144

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/134 (49%), Positives = 86/134 (64%), Gaps = 11/134 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L
Sbjct: 9   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTERLCL 68

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 69  PKDRLYVTYFGGDXASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGETGPCGPC 127

Query: 173 SEIFFDQ--GECIP 184
           SE+ FD+  G  +P
Sbjct: 128 SELHFDRIGGRSVP 141


>gi|293336582|ref|NP_001168420.1| hypothetical protein LOC100382190 [Zea mays]
 gi|223948147|gb|ACN28157.1| unknown [Zea mays]
          Length = 349

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 152/282 (53%), Gaps = 16/282 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           ++++G +     +  ++D + R+    +H+ATHLL  AL +++GS  SQ GS +  D LR
Sbjct: 1   MIKQGSVEVGKEVDASVDAKLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDHLR 60

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD    +P++  EL +IE  +N  I     V T++M  +DA  +GA A+ G KY ++VRV
Sbjct: 61  FDFNFHRPLSEEELTTIEALINQWIGNAAHVETKVMALQDAKNAGAIAMFGEKYGEQVRV 120

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V V     G+ S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ G     ++  +
Sbjct: 121 VEVP----GI-SLELCGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFVDYVCAR 175

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------ 792
           D  ++ L   LKV   +V  RVE I EE R  + + +  + ++ V  L    +A      
Sbjct: 176 DNYMRRLCLSLKVKAEDVNSRVETILEELRATRNVASSLRSKIAV--LKAASLASRATTV 233

Query: 793 ---DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              +V  +   + +VD+  LKS  + L   ++    +++G S
Sbjct: 234 EPQNVRIVVENMGDVDADGLKSAAEYLIDTLKDPAAVILGSS 275


>gi|183011992|gb|ACC37925.1| alanyl-tRNA synthetase [Themira superba]
          Length = 146

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 9/127 (7%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L
Sbjct: 17  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTERLCL 76

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGPCGPC
Sbjct: 77  PKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGETGPCGPC 135

Query: 173 SEIFFDQ 179
           SE+ FD+
Sbjct: 136 SELHFDR 142


>gi|242556274|pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase Lacking The C-Terminal Dimerization Domain In
           Complex With Ala-Sa
          Length = 739

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 196/802 (24%), Positives = 314/802 (39%), Gaps = 209/802 (26%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQK 66
           R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +T  Q 
Sbjct: 66  REYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQP 125

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTKEFDLD 121
           C+R     +DLD+VGRT RH T FE   +  F++ G   Y+K   +    +LL +     
Sbjct: 126 CIRL----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELLNE----- 176

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
                + V  ED                    I   +  W  A  G  GPC E       
Sbjct: 177 -----LGVKKED--------------------IVYKEEPW--AGGGNAGPCLE------- 202

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQ------------NKQERFILPKMSIDTGMG 229
            I GGL           E+  LVF   E+              K + +I     +DTG G
Sbjct: 203 AIVGGL-----------EVATLVFXNLEEHPEGDIEIKGARYRKXDNYI-----VDTGYG 246

Query: 230 LERMATVLQEKTNNYDI---------------------DLFKHLIQASEQVTGM------ 262
           LER     +     YD                      +  + ++  S ++ G+      
Sbjct: 247 LERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIXGELRG 306

Query: 263 -------------------KYEGNNIVNHRV--IVDHLRSSSFLIADGILPANEGRGYVL 301
                              + EG  +   +V  + DH R   F + DG++P+N G GY+ 
Sbjct: 307 ERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLA 366

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA--KLL----------IEE 349
           R  +RR++  A  L                E+G    +L++   K+L          ++E
Sbjct: 367 RLXIRRSLRLAEEL----------------ELGLDLYDLVEXHKKILGFEFDVPLSTVQE 410

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L  E ER+  T+ +G  L++ ++    K   L  D   +LYD+HG+P+++   I   +G
Sbjct: 411 ILELEKERYRTTVSKGTRLVERLVERKKK---LEKDDLIELYDSHGIPVELAVGIAAEKG 467

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
                       L ++ S+A            ++   +L+ +Y AT+ + YD        
Sbjct: 468 AEVEXPKDIYAELAKRHSKAE---------KVQEKKITLQNEYPATEKLYYD-------- 510

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
             D  +L                       E   E +  +   V+ +++ FY E+GGQ  
Sbjct: 511 --DPTLL-----------------------EFEAEVIGVEGDFVILNRSAFYPESGGQDN 545

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  I +G + ++ DV  +A+G+ +H  +V+         +   ID   R +   +HSA
Sbjct: 546 DVGYLIANGGKFEVVDVL-EADGVVLH--VVKGAKPEVGTKVKGVIDSDVRWRHXRHHSA 602

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+L ++L  +LG+HV Q G+       R DVTH +  +  E+K IE   N  I  N P+
Sbjct: 603 THVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEXLANREILANKPI 662

Query: 650 VTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                +R +A       L   G     ++RVV V     G    A CGGTH  STGEI  
Sbjct: 663 KWEWXDRIEAERKFGFRLYQGGVPPGRKIRVVQV-----GDDVQA-CGGTHCRSTGEIGX 716

Query: 708 LYIVSESSIRAGIRRIEAITGQ 729
           L I+   SI+ G+ R E   G+
Sbjct: 717 LKILKVESIQDGVIRFEFAAGE 738


>gi|183011932|gb|ACC37895.1| alanyl-tRNA synthetase [Nemopoda nitidula]
          Length = 159

 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/134 (48%), Positives = 84/134 (62%), Gaps = 11/134 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+   L
Sbjct: 15  VANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICSWAWEFLTERLCL 74

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +        + D E  ++W  + G+  + I+     DNFW M ETGPCGPC
Sbjct: 75  PKDRLYVTYFGGDAASGLEPDLECKQMWTDL-GVKPEHILPGNMKDNFWEMGETGPCGPC 133

Query: 173 SEIFFDQ--GECIP 184
           SE+ FD+  G  +P
Sbjct: 134 SELHFDRIGGRSVP 147


>gi|296109504|ref|YP_003616453.1| alanyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434318|gb|ADG13489.1| alanyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 873

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 190/393 (48%), Gaps = 37/393 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T FY E GGQ  DTG  I D  + ++ DVQK  + I   H +     LR    + 
Sbjct: 504 VILDRTAFYPEGGGQKADTGYLIKDNKKYRVLDVQKFGKAI--AHKLESVEGLREGDEVK 561

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R  L  +H+ATH++  A   +LG HV+Q GS +  D  R D+TH K ++  E+
Sbjct: 562 GVIDWDRRESLMRHHTATHIIGSACRKVLGKHVNQAGSDVDIDKARLDITHYKRLSREEI 621

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           K IE   N+I+ +N  +  + M+R +A      ++   G    DR+R+V +  +D  V +
Sbjct: 622 KEIERIANEIVVRNYNIEAKFMDRNEAEEKYGFSIYQGGVVPGDRIRIVKI--DDIDVQA 679

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH S TG++ L+ I+    ++ G+ R+    G +A   +   ++ L S++  LK
Sbjct: 680 ---CGGTHCSKTGDVGLIKILKTERVQDGVERLIYSAGLKALEKVQELEDNLLSVSETLK 736

Query: 751 VSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVD 805
               NVV  +++    W+E RK      K+  +L   +L     K+ DV  +   + E +
Sbjct: 737 CQPENVVKVLDKFVNEWKELRKRVEELEKKVGELKKYELINKFEKVGDVELLVEKV-EGN 795

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            KEL ++ D L    +  I+        K+  V + V E L++ F               
Sbjct: 796 PKELLNLADHLALGNRLVILTNGNFVICKRGEVKLDVRE-LINLF--------------- 839

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G GGGR  +AQ       K+D+++  +   +K+
Sbjct: 840 GRGGGREDLAQG------KSDKSVEEIKKIVKE 866



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 195/450 (43%), Gaps = 121/450 (26%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F+ FF+K+GHE +  + ++     D  L+   S  V    +  G  KP    +   Q C+
Sbjct: 62  FINFFKKHGHEPIKRAPVVAKRWRDDILLTIASIAVFQPWVTKGLVKPKANPLVIAQPCI 121

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M G+ +F       Y+ +  ++L ++   K   +D++
Sbjct: 122 RL----NDIDNVGRTGRHLTCFTMGGHHAFNSEEEFKYWIDETVELCFNFF-KNLGIDEK 176

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                                         IT  +++W     G  GPC E+        
Sbjct: 177 S-----------------------------ITFIESWWEGG--GNAGPCFEVLTHG---- 201

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                         +E+  LVFMQ+E+   + + I P   +DTG G+ER   V   +   
Sbjct: 202 --------------VELATLVFMQYEKVGNEYKEI-PLKIVDTGYGIERFVWVSTGEPTI 246

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIV--------------------------------- 270
           YD  LFK +I+  ++  G++     I+                                 
Sbjct: 247 YDA-LFKDIIEKLKKEAGIEEIDKEILAKITELSGLMDVKDVGDLRKLREVVAKRVGLDV 305

Query: 271 -----------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT- 318
                      N   +VDH R+ +FL+ DG++P+N   GY+LR ++R+++ +   L    
Sbjct: 306 EELERILEPYENLYALVDHTRAITFLLGDGVVPSNVKEGYLLRMLIRKSLRHLNKLNLNL 365

Query: 319 ---EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL-S 374
              + + +HL      E+ + YPEL+  K  +E+ L  E ER+ +TL RG    +G++  
Sbjct: 366 SLFDVVELHL-----KELKALYPELLDMKDYMEKVLALETERYKETLKRG----EGIIKR 416

Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            L K + L+ +   +LYD+HG+P+D++++I
Sbjct: 417 LLKKKKSLDLEDIIELYDSHGIPVDLIEEI 446


>gi|94272583|ref|ZP_01292152.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93450079|gb|EAT01436.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
          Length = 267

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 149/272 (54%), Gaps = 11/272 (4%)

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++ +E  VN  I  N  + T ++NR++A+ SGAAAL G KY + VRVV+V     G  S 
Sbjct: 1   IREVERLVNVEIRANNSLETAMVNRDEALQSGAAALFGEKYGETVRVVTV-----GEFSK 55

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV +TGEI L  I++E+ I A  RRIEA+ G+ A       +++  +LA  LK 
Sbjct: 56  ELCGGTHVGATGEIGLFRIIAEAGIAASTRRIEAVCGEEALHRCQQLEDQWAALAGRLKC 115

Query: 752 SQGNVVGRVEEIWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             G + GR++++    ++L     Q+        L  E     +I     ++  +     
Sbjct: 116 GPGELAGRIDKLLARQKELERKLTQMASQASGFDLERELSRVREIGGARLLACRVPADSV 175

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           K L+ + D ++ K+ S  I ++    + +A++L +V ++L  R+ A +L +  A ++ GG
Sbjct: 176 KTLRELGDKVRDKLGSTGIAVLAAEIDGQAALLALVGKELQGRYKAGELVKQVAALV-GG 234

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGGRP MAQ+GG +    DQA+A V   ++K
Sbjct: 235 KGGGRPDMAQAGGGDPAGIDQALAAVPEIVEK 266


>gi|262301341|gb|ACY43263.1| ala-tRNA synthetase [Daphnia magna]
          Length = 235

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 138/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           + GPCGPCSEI FD+     GG   +   + +    +EIWNLVFM F +++      LP+
Sbjct: 1   DVGPCGPCSEIHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFMTFNRESDGSLKPLPR 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN------NIVN--H 272
             ID GMG ER+ +V+Q K +NYD D+F+ + +A ++ T    Y+G       N V+  +
Sbjct: 57  KHIDCGMGFERLVSVIQNKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGSEDVNGVDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRR++RR + YA      +P     L+P +C 
Sbjct: 117 RVLADHARTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQ 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +   L+ + +  E+ +F KTL RG  LL+  +S L     L GDVA++L
Sbjct: 177 VLGLTFPEVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRL 235


>gi|183011972|gb|ACC37915.1| alanyl-tRNA synthetase [Themira annulipes]
          Length = 147

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/134 (48%), Positives = 84/134 (62%), Gaps = 11/134 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFF MLGN+SFG YFK      AW+ LT+   L
Sbjct: 3   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFXMLGNWSFGDYFKXEICTWAWEFLTERLCL 62

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W ++ G+  + I+     DNFW M ETGPCGPC
Sbjct: 63  PKDRLYVTYFGGDEASGLEPDFECKQIWTEL-GVRPEHILPGNMKDNFWEMGETGPCGPC 121

Query: 173 SEIFFDQ--GECIP 184
           SE+ FD+  G  +P
Sbjct: 122 SELHFDRIGGRSVP 135


>gi|238588757|ref|XP_002391823.1| hypothetical protein MPER_08693 [Moniliophthora perniciosa FA553]
 gi|215457008|gb|EEB92753.1| hypothetical protein MPER_08693 [Moniliophthora perniciosa FA553]
          Length = 355

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 133/252 (52%), Gaps = 8/252 (3%)

Query: 488 VSSIVKAIVQQGEIVE---EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQI 543
           +++ VKAI      +    E   G    V+ D+T FYAE+GGQ  DTG  + DG+   ++
Sbjct: 4   ITATVKAIFHNKSFISSTSEIPPGTDFGVLLDRTSFYAESGGQENDTGSIVIDGVADFEV 63

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TDVQ    G  +H   ++ G L+    +V   D   R  L  NH+ATH+L++ L  +LG 
Sbjct: 64  TDVQV-YNGYVLHTGRLKYGRLKVGDEVVSQYDELRRWPLRNNHTATHILNYCLREVLGD 122

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-S 662
           H+ Q GS + P  LRFD +H   IT+ EL  IE+     I++N+ V ++ ++ ++     
Sbjct: 123 HIDQKGSLVAPSKLRFDFSHKAGITTPELTKIENMSLGWISRNVKVYSKDLSLQEGYKIP 182

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS--TGEIMLLYIVSESSIRAGI 720
           G  A+ G  Y D VRVVS+EY+   +           +S  TG+I    I  ES I  GI
Sbjct: 183 GLRAVFGEAYPDPVRVVSLEYDVDEIAKDLKNPKWRSTSQKTGDIKHFVITEESGIAKGI 242

Query: 721 RRIEAITGQRAR 732
           RRI A+TG  A+
Sbjct: 243 RRITAVTGHEAQ 254


>gi|255761632|gb|ACU32859.1| alanyl-tRNA synthetase [Dicranosepsis sp. 'fake revocans']
          Length = 147

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/134 (49%), Positives = 83/134 (61%), Gaps = 11/134 (8%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L
Sbjct: 7   VANTQKCIRAGGKHNDLDXVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLAL 66

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGP GPC
Sbjct: 67  PKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILPGSMKDNFWEMGETGPXGPC 125

Query: 173 SEIFFDQ--GECIP 184
           SE  FD+  G  +P
Sbjct: 126 SEXHFDRIGGRSVP 139


>gi|213419398|ref|ZP_03352464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 248

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 142/234 (60%), Gaps = 12/234 (5%)

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+S
Sbjct: 2   IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 56

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+ 
Sbjct: 57  ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 116

Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+L
Sbjct: 117 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 176

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +
Sbjct: 177 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 228


>gi|189531570|ref|XP_001922060.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Danio rerio]
          Length = 305

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 38/241 (15%)

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFM 206
           +I+  +  DNFW M +TGPCGPCSEI +D+     GG   +   + +    +EIWNLVF+
Sbjct: 60  RILPGSMKDNFWEMGDTGPCGPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFI 115

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF ++++     L K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG +   
Sbjct: 116 QFNRESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYT 175

Query: 267 NNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
             +         + +RV+ DH R+ +  + DG  P N GRG                   
Sbjct: 176 GKVSAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGRG------------------- 216

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
             P  M LL  + +  G A+PEL +   ++++ +  E+ +F KTL R   +LD  +  LG
Sbjct: 217 --PTEM-LLFGISSRQGDAFPELRKDPDMVKDIINEEEAQFLKTLSRRRRILDRKIQSLG 273

Query: 378 K 378
           +
Sbjct: 274 E 274



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI 49
           + IR  F++  +++ H+ + SS+ IP +DPTL+F N+GM  F N+
Sbjct: 7  AAQIREKFIDLIRRHEHQYVHSSATIPLDDPTLLFANAGMNQFVNV 52


>gi|199581644|gb|ACH89493.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581648|gb|ACH89495.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581650|gb|ACH89496.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581654|gb|ACH89498.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581656|gb|ACH89499.1| alanyl-tRNA synthetase [Alpheus millsae]
          Length = 190

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/182 (42%), Positives = 113/182 (62%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++     ILPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKILPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K Y G       + I + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|307108974|gb|EFN57213.1| hypothetical protein CHLNCDRAFT_143654 [Chlorella variabilis]
          Length = 524

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 7/118 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           V+ +R+TF+EFF    H  + SS ++P NDPTL+  N+GM  FK IF G   P       
Sbjct: 15  VARVRSTFVEFFVGKQHTAVSSSPVVPVNDPTLL--NAGMNQFKPIFLGTVDPNSDFAKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           +     QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI  AW+LLT+
Sbjct: 73  KRAANSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAISWAWELLTE 130



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 178/387 (45%), Gaps = 43/387 (11%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A G  +H      G +R   ++   +DY  R ++  NH+ TH+L++AL  +LG HV Q G
Sbjct: 135 AAGYVLHLGRRPEGEIRVGEAVTTKVDYARRGRIMPNHTFTHVLNYALRKVLGDHVEQKG 194

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALL 668
           S + PD LRFD +++  + +A+L  +E      +A    V  + +    A A +G  A+ 
Sbjct: 195 SIVLPDRLRFDFSNNGVVEAAKLAEVEALCQQYLASPQQVYKQEVPLAQAKAINGLRAVF 254

Query: 669 GTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           G  Y D VRVVSV           + ED   +    CGGTH+ ST +     +++E  I 
Sbjct: 255 GETYPDPVRVVSVGRPVEQLVANPDAEDNLSYPIEFCGGTHLDSTAQARAFALLTEEGIS 314

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--------------- 762
            G+RRI A+TG+ A + +   D+   ++ +  ++  G + G V+                
Sbjct: 315 KGVRRIVAVTGEEAEAAIALADQLAAAVEAAGRLPVGEMQGEVKALTQAVSGAVIPTVRK 374

Query: 763 -------------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-SHIISEVDSKE 808
                        I EE +K    + +R +   V+       A   F+ + +   +D+K 
Sbjct: 375 AALAEALQGLTRLILEEQKKAAAANKERAVAAAVDASDAAAAAGQKFLVTRLDVGLDAKA 434

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           ++   +A+QKK  S  +M +  + E KA     V +D+  + +A D  +       GG G
Sbjct: 435 VQEAWNAIQKKHPSLPVMFL-TAGEDKALAYAGVPQDISKQLSAGDWIK-EVLGTLGGRG 492

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASF 895
           GG+P  AQ  GP   K D+A+   ASF
Sbjct: 493 GGKPTNAQGTGPEVGKVDEALQAAASF 519


>gi|294992425|gb|ADF57351.1| alanyl-tRNA synthetase [Roseburia inulinivorans DSM 16841]
          Length = 190

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
           +R++E+WN VF QFE   K     L + +IDTGMGLER+A V+Q+  + +DID  K +  
Sbjct: 15  DRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVVMQDVDSVFDIDTMKAIRD 74

Query: 255 ASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
              +++G KYE + +  V+ R+I DH+RSS+F+I+DGI+P+NEGRGYVLRRI+RRA  + 
Sbjct: 75  RVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSNEGRGYVLRRIIRRAARHG 134

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R+LG     M  L   +  E    YPEL + K  I + L  E+E+F KT+
Sbjct: 135 RMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQEEEKFAKTI 184


>gi|259015943|gb|ACV89254.1| alanyl-tRNA synthetase [Panorpa sp. BMW-2009]
          Length = 150

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 95/153 (62%), Gaps = 14/153 (9%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--DE------DEEAF 137
           HHTFFEMLGN+SFG YFK+   + AW+LLT+ F L   RLY+T +  DE      DEE  
Sbjct: 2   HHTFFEMLGNWSFGDYFKKEICEWAWELLTQVFKLPGDRLYVTYFGGDEASGLQPDEECR 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGE 195
            +W ++ G+ +  +I  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +  
Sbjct: 62  DIWIRL-GVPSAHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDP 117

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
             +EIWNLVF+QF +++      LPK  ID GM
Sbjct: 118 DVLEIWNLVFIQFNRESDSSLKSLPKKHIDCGM 150


>gi|118566844|gb|ABL01741.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 140

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 94/132 (71%), Gaps = 1/132 (0%)

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   
Sbjct: 10  RVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEV 69

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYD
Sbjct: 70  MGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYD 128

Query: 393 THGLPLDIMQDI 404
           T+G P+D+  D+
Sbjct: 129 TYGFPVDLTADV 140


>gi|262301315|gb|ACY43250.1| ala-tRNA synthetase [Acanthocyclops vernalis]
          Length = 237

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 141/241 (58%), Gaps = 19/241 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   +   + +    +EIWNLVF+QF ++       LP 
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNREQDSTLRSLPA 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEG-------NNI-VN 271
             ID GMG ER+ +V+Q K +NYD D+F  + QA E+ +  G+ Y+G       + I + 
Sbjct: 57  KHIDCGMGFERLVSVIQNKRSNYDTDIFVPIFQAIEKESGVGVPYKGRVGDDDTDKIDMA 116

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALC 330
           +RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RR + Y+      +P     L+  + 
Sbjct: 117 YRVVADHIRTLTVALSDGGRPDNVGRGYVLRRILRRGIRYSSEKLNAKPGFFAALVDTVV 176

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFK 389
             +G  +PE+ +    I+  +  E+ +F KTL+RG  LLD  ++ L +  ++L GD+A++
Sbjct: 177 QLLGEFFPEVGKDPESIKNIINEEETQFLKTLNRGHKLLDRTIAKLPQGTKVLPGDIAWR 236

Query: 390 L 390
           L
Sbjct: 237 L 237


>gi|229545938|ref|ZP_04434663.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229308901|gb|EEN74888.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 134

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/131 (48%), Positives = 83/131 (63%), Gaps = 6/131 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    D 
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122

Query: 123 RRLYITVYDED 133
            +LY+TVY +D
Sbjct: 123 EKLYVTVYPKD 133


>gi|226328742|ref|ZP_03804260.1| hypothetical protein PROPEN_02642 [Proteus penneri ATCC 35198]
 gi|225201928|gb|EEG84282.1| hypothetical protein PROPEN_02642 [Proteus penneri ATCC 35198]
          Length = 228

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 126/220 (57%), Gaps = 10/220 (4%)

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           + GS +    LRFD +H + +   +L+ IED VN  I  N PVVT +M+ EDA   GA A
Sbjct: 4   KKGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVTELMDLEDAKEKGAMA 63

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L G KY++RVRV+++     G  S+ LCGGTH S TG+I L  IVSES   AGIRRIEAI
Sbjct: 64  LFGEKYDERVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIVSESGTAAGIRRIEAI 118

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           TG  A   +  Q + +  +A  LK    N+V R++ + E+YR L+    + K Q   ++ 
Sbjct: 119 TGIAAIESIHEQSDLISLVAQVLKSDGTNLVERIKTVQEKYRLLEKELQQLKDQQAAQES 178

Query: 787 S-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           S        +  +  +   ++ V+ K L++++D L+K I+
Sbjct: 179 SSLGSQAKNVKGIKLLVRELNGVEPKMLRTMVDDLKKSIR 218


>gi|199581748|gb|ACH89545.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581750|gb|ACH89546.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581752|gb|ACH89547.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581754|gb|ACH89548.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581756|gb|ACH89549.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581758|gb|ACH89550.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581760|gb|ACH89551.1| alanyl-tRNA synthetase [Alpheus nuttingi]
          Length = 190

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581718|gb|ACH89530.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581720|gb|ACH89531.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
          Length = 190

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +    I+  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILZDAFPEVAKDPEYIKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|14521870|ref|NP_127346.1| alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|13878785|sp|Q9UY36|SYA_PYRAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|5459090|emb|CAB50576.1| alaS alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 914

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 190/391 (48%), Gaps = 24/391 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V DQT FY E GGQ  DTG    +G  +++T+VQK   G  + H +   G+ +  M + 
Sbjct: 541 IVLDQTAFYPEGGGQPYDTGVLFVNGSEVKVTNVQKV--GKVIVHKVENPGLFKEGMEVR 598

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R Q   +H+ TH+L  AL  +LG HV Q GS +T D  R D++H K I+  EL
Sbjct: 599 GRIDWDRRIQHMRHHTGTHVLMGALVRVLGKHVWQAGSQLTTDWARLDISHYKRISDEEL 658

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           + IE   N I+ ++  V    + R +A       L   G      +RVV +  ED  V +
Sbjct: 659 REIERLANRIVMEDRKVTWEWLPRTEAEQRYGFRLYQGGVVPGRVIRVVKI--EDWDVQA 716

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH+ STG +  + I+    I+ G+ RI    G+ A      + E LK  +  L+
Sbjct: 717 ---CGGTHLPSTGLVGPIKILRTERIQDGVERIIFACGEAAIKEWQKEREILKKASQVLR 773

Query: 751 VSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD 805
           V    +    E     W+E RK      K   +L V +L     K+ +  F+  I+ E  
Sbjct: 774 VPPEKLPETAERFFNEWKEARKEVEKLKKELAKLLVYELEAKVQKVKEYEFIGEIV-EGS 832

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
             +L+  ++ L+K   + I++LV     K+    I V +++    NA DLA+     + G
Sbjct: 833 MDDLREAVERLKK--PNRIVVLVS----KEGYFAISVGDNV--NLNANDLAK-KLTSIAG 883

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGGGR  +AQ    + +KA +AI  +   L
Sbjct: 884 GGGGGRKDVAQGRIKDVSKAKEAIESIVKLL 914



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 207/479 (43%), Gaps = 130/479 (27%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKN-IFTGQEKP 56
            +  +R  FL+FF+K  HE+ P        ++P     ++   + ++ F+  + +G+  P
Sbjct: 58  TLDEMREKFLKFFEK--HEVYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADP 115

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAW 111
               +   Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA+
Sbjct: 116 PANPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWIDETVELAF 171

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +  TKE  +           ED                    IT  +N W  A  G  GP
Sbjct: 172 EFFTKELKMKP---------ED--------------------ITFKENPW--AGGGNAGP 200

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-----------KQERFI-L 219
             E+ +                  R +E+  LVFMQ+++             K +R++ +
Sbjct: 201 AFEVLY------------------RGLEVATLVFMQYKKAPENAPEDQVVIIKGDRYVPM 242

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV--- 274
               +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+  N R+   
Sbjct: 243 ETKVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKRMAGVEKIDERILMENSRLAGM 301

Query: 275 ---------------------------------------IVDHLRSSSFLIADGILPANE 295
                                                  I DH ++ +F++ADG++P+N 
Sbjct: 302 FDIEDMGDLKLLRKKVAEKVGISVEELEKAIRPYELIYAIADHTKALTFMLADGVIPSNV 361

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+ R ++R+++ + + LG   PL   ++     E+   +PE  + + +I E +  E+
Sbjct: 362 KAGYLARLLIRKSIRHLKELGLEVPL-SEIVALHIKELHKTFPEFKEMEDVILEIIDLEE 420

Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +++ +TL RG  L+   ++ L   G  EI L   + F  Y++HGL  +++++I    G+
Sbjct: 421 KKYSETLKRGSDLVRREIAKLKKKGMSEIPLEKLITF--YESHGLTPELVKEIAEKEGI 477


>gi|199581736|gb|ACH89539.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581738|gb|ACH89540.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581740|gb|ACH89541.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581742|gb|ACH89542.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581744|gb|ACH89543.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581746|gb|ACH89544.1| alanyl-tRNA synthetase [Alpheus malleator]
          Length = 190

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +    I+  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYIKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581646|gb|ACH89494.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581652|gb|ACH89497.1| alanyl-tRNA synthetase [Alpheus millsae]
          Length = 190

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKXLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K Y G       + I + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581836|gb|ACH89589.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581838|gb|ACH89590.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581840|gb|ACH89591.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581842|gb|ACH89592.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581844|gb|ACH89593.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581846|gb|ACH89594.1| alanyl-tRNA synthetase [Alpheus umbo]
          Length = 190

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581614|gb|ACH89478.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
          Length = 190

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLXGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581716|gb|ACH89529.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581722|gb|ACH89532.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581724|gb|ACH89533.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581726|gb|ACH89534.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581728|gb|ACH89535.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581730|gb|ACH89536.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581732|gb|ACH89537.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581734|gb|ACH89538.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
          Length = 190

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +    I+  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILEDAFPEVAKDPEYIKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581658|gb|ACH89500.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581660|gb|ACH89501.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581662|gb|ACH89502.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581664|gb|ACH89503.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581666|gb|ACH89504.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581668|gb|ACH89505.1| alanyl-tRNA synthetase [Alpheus colombiensis]
          Length = 190

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  RLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581698|gb|ACH89520.1| alanyl-tRNA synthetase [Alpheus xanthocarpus]
 gi|199581700|gb|ACH89521.1| alanyl-tRNA synthetase [Alpheus xanthocarpus]
 gi|199581702|gb|ACH89522.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581704|gb|ACH89523.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581706|gb|ACH89524.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581708|gb|ACH89525.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581710|gb|ACH89526.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581712|gb|ACH89527.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581714|gb|ACH89528.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
          Length = 190

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ +VLQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKNLPKKHIDCGMGLERLVSVLQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581824|gb|ACH89583.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581826|gb|ACH89584.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581828|gb|ACH89585.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581830|gb|ACH89586.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581832|gb|ACH89587.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581834|gb|ACH89588.1| alanyl-tRNA synthetase [Alpheus schmitti]
          Length = 190

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K +NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKPSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYAGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581670|gb|ACH89506.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581672|gb|ACH89507.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581674|gb|ACH89508.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581676|gb|ACH89509.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581680|gb|ACH89511.1| alanyl-tRNA synthetase [Alpheus estuariensis]
          Length = 190

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKSLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|299561732|gb|ADJ36938.1| alanyl-tRNA synthetase [Zodion cinereum]
          Length = 126

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 9/123 (7%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ L     + +  
Sbjct: 1   QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICLWAWEFLVCSLQIPEDN 60

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LYIT +  DE        E  ++W  I G+ +D I+  +  DNFW M +TGPCGPC EI 
Sbjct: 61  LYITYFGGDEKSDLAPDVECKQIWLDI-GVPSDHIVPGSMKDNFWEMGDTGPCGPCCEIH 119

Query: 177 FDQ 179
           +D+
Sbjct: 120 YDR 122


>gi|199581612|gb|ACH89477.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581616|gb|ACH89479.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581620|gb|ACH89481.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581622|gb|ACH89482.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581624|gb|ACH89483.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581626|gb|ACH89484.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581628|gb|ACH89485.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581632|gb|ACH89487.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581634|gb|ACH89488.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581638|gb|ACH89490.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581640|gb|ACH89491.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581642|gb|ACH89492.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|262301405|gb|ACY43295.1| ala-tRNA synthetase [Streptocephalus seali]
          Length = 235

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI FD+     GG   +   +++    +EIWNLVFM F +++      LPK
Sbjct: 1   ETGPCGPCSEIHFDR----IGGRDAAHLVNQDDPDVLEIWNLVFMTFNRESDSSLKHLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K +NYD DLF  + +A ++ TG       +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRSNYDTDLFMPIFEAIQKGTGAPAYSGKVGAEDKEGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH+R+ +  ++DG  P N GRGYVLRRI+RR + +A      +P     L+  +  
Sbjct: 117 RVVADHIRTLTXSLSDGGRPDNVGRGYVLRRILRRGIRFATEKLKAKPGFFGSLVHEVIK 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  + E+ +    +   +  E+ +F KTL RG  LL+  ++ L  +++L GD+A++L
Sbjct: 177 ILGDTFAEIKKDPDSVISIINEEEAQFLKTLSRGRNLLERTIAKLDGNKVLPGDIAWRL 235


>gi|199581678|gb|ACH89510.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581682|gb|ACH89512.1| alanyl-tRNA synthetase [Alpheus estuariensis]
          Length = 190

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKSLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L     E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDXVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581684|gb|ACH89513.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581686|gb|ACH89514.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581688|gb|ACH89515.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581690|gb|ACH89516.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581692|gb|ACH89517.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581694|gb|ACH89518.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581696|gb|ACH89519.1| alanyl-tRNA synthetase [Alpheus utriensis]
          Length = 190

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWNLVFMQF +++      LPK  ID GMG ER+ ++LQ K++NYD D+F  L  A +
Sbjct: 7   IEIWNLVFMQFNRESDGSLRNLPKKHIDCGMGFERLVSILQNKSSNYDTDIFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ + +++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIILSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYAKSIINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581618|gb|ACH89480.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
          Length = 190

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
            ++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  XLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|17862882|gb|AAL39918.1| SD01519p [Drosophila melanogaster]
          Length = 540

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 201/462 (43%), Gaps = 61/462 (13%)

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDV 546
           +S + A+  + + V E  SGQK  +V D+T FYAE+GGQ+ D G    + D     + D 
Sbjct: 79  NSKIVALRFENQFVNEITSGQKAGIVLDKTNFYAESGGQIYDQGALVKVNDEANEFLVDR 138

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
                G  +H  +VE G L+    L L ID + R     NHSATH L+H L  +LG    
Sbjct: 139 VYNRGGYILHIGVVE-GTLKVGDELELHIDVERRWLTMKNHSATHALNHCLLQVLGKDTE 197

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----- 661
           Q GS + P+ LRFD      +T  ++   E    +++ +N+P    I  +E  +A     
Sbjct: 198 QKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQLTKEMVYKNVP----IYAKESKLALAKKI 253

Query: 662 SGAAALLGTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            G  ++    Y D VRV+S            + E G   S   CGGTH+  +G IM   I
Sbjct: 254 RGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSEAGEQTSVEFCGGTHLRRSGHIMDFVI 313

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-----VEEIWE 765
            SE +I  GIRRI A+TG  A   L   +   + +         +  G+     V+EI E
Sbjct: 314 SSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIVRLKATIDNDKSGKDSKSHVKEIVE 373

Query: 766 ----------------EYRKL------QLIHAKRKLQLNVEDLSCHK---IADVNFMSHI 800
                           E R L       L   +R L+  V      +   + + N  + +
Sbjct: 374 LTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAVSVTVVERAKTLCEANPNATV 433

Query: 801 ISEV-----DSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAV 853
           + E      ++K L + +  ++ ++     M + +  + KK   L  V +  +++   A 
Sbjct: 434 LVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDADSKKIFCLSSVPKSAVEKGLKAN 493

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +  +  +  L GG GGG+P  AQ+ G N  K D+ +   + F
Sbjct: 494 EWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQLASKF 534


>gi|37573979|gb|AAH58620.1| Aars protein [Mus musculus]
          Length = 507

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/277 (35%), Positives = 141/277 (50%), Gaps = 21/277 (7%)

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQI 543
           + V A+ ++   V+E V+GQ+  VV D+T FYAE GGQ+ D G  +       D     +
Sbjct: 43  ATVLALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTV 102

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            + Q +  G +V H     G L+    + L ID   RR +  NH+ATH+L+ AL ++LG 
Sbjct: 103 KNAQVR--GGYVLHIGTIYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG- 159

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-S 662
              Q GS + PD LRFD T    +++ ++K  E+ VN +I    PV T+      A A  
Sbjct: 160 EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQ 219

Query: 663 GAAALLGTKYNDRVRVVSV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIV 711
           G  A+    Y D VRVVS+     E  D      G + S   CGGTH+ ++       IV
Sbjct: 220 GLRAVFDETYPDPVRVVSIGVPVSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIV 279

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
           +E +I  GIRRI A+TG  A+  L   +   KSL++ 
Sbjct: 280 TEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLSAM 316


>gi|330973619|gb|EGH73685.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 281

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 158/289 (54%), Gaps = 19/289 (6%)

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H + I + +L+++ED VN  I +N  V+T   + + A   GA AL G KY D VRV
Sbjct: 1   FDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEETDIDTAKKKGAMALFGEKYGDSVRV 60

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +S+    GG  S  LCGG H S TG+I L  IVSE  + AG+RRIEA+TG  A + L   
Sbjct: 61  LSM----GGEFSVELCGGIHASRTGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSA 116

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-------EDLSCHK- 790
           +++LK  A+ +K ++ N++ ++  + E  R L+    K+  QL         +DLS    
Sbjct: 117 EDQLKEAATLVKGNRDNLLDKLTAVIERNRLLE----KQPEQLQAKAASAAGDDLSSAAL 172

Query: 791 -IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            +  V  ++  +   D K L +++D L+ K+   +I+L G   E K  ++  VT+DL  +
Sbjct: 173 DVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL-GSVHEDKVVLVAGVTKDLTGQ 231

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             A DL +  A    GG GGGRP MAQ GG +    D A+A    F+++
Sbjct: 232 LKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDSALALAVPFVEQ 279


>gi|284163328|ref|YP_003401607.1| alanyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284012983|gb|ADB58934.1| alanyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 925

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 195/404 (48%), Gaps = 44/404 (10%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +VV DQT FY E GGQ  DTG    D    ++TDVQ + +G+ +H A    G  + E  +
Sbjct: 545 DVVLDQTMFYPEGGGQPADTGTLSTDDTAAEVTDVQIE-DGVILHRADENPG--KGEF-V 600

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID   RRQL  +H+ATH++ HA   +LG H+ Q G+    D  R DV H   I+ A+
Sbjct: 601 NGQIDGGRRRQLMRHHTATHIVIHAARQVLGEHIRQAGAQKGVDSSRIDVRHYDRISRAD 660

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVH 689
           +K IE   N+++  N  V     +R DA A     L   G    +++R++ V        
Sbjct: 661 VKEIESLANELVMDNTQVSQDWPDRHDAEAEHGFDLYQGGIPPGEQIRLIQV------AD 714

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               CGGTHV+ TG+I  + I++   ++ G+ RI    G+ A      +++ L   A  L
Sbjct: 715 DIQACGGTHVARTGDIGSIKILNTERVQDGVERITFAAGEAAIESTQVKEDALYEAAEIL 774

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------------DVNFM 797
            VS  +V    E  +EE++      A+ K    +EDL+    A            DV   
Sbjct: 775 DVSPEDVPETAERFFEEWK------ARGK---EIEDLTEQLAAARAGGGGGGEEVDVGDR 825

Query: 798 SHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD- 854
           + ++  +D+   EL++  +AL   ++ G I ++G S +  A  ++ V +D     NA + 
Sbjct: 826 TAVVDRIDADMDELRATANAL---VEEGKIAVLG-SGQSGAQFVVAVPDD--SDVNAGEV 879

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  L+ +V GGGGG   P  AQ GGPN    D A+      L++
Sbjct: 880 VGELAGRVGGGGGGP--PDFAQGGGPNVEDLDAALEDAPDVLRQ 921



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 108/473 (22%), Positives = 186/473 (39%), Gaps = 138/473 (29%)

Query: 3   NVSSIRTTFLEFFQKNGHELL---PSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
           +++ +R  FL +F+ N HE +   P ++    +D  ++ T + +  F+ + T G+  P  
Sbjct: 61  SLTEMREVFLSYFEDNDHERIEPYPVAANRWRDD--VLLTQASIYDFQPLVTSGETPPPA 118

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG---------------YFK 103
             +T  Q C+R      D+DNVG+T RH   FEM+ + +F                 Y+K
Sbjct: 119 NPLTVSQPCIRM----QDIDNVGKTGRHTMAFEMMAHHAFNTREDIPEDKYAYHGEVYWK 174

Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163
           +R ++L   LL +                             L AD I  +T  ++ W  
Sbjct: 175 DRTVELCDGLLQE-----------------------------LGAD-ISEVTYIEDPWVG 204

Query: 164 AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------R 216
              G  GP  E+ +                  R +EI  LVFM  EQ  + E       R
Sbjct: 205 G--GNAGPAIEVIY------------------RGLEIATLVFMCMEQDPEGEYELKDGNR 244

Query: 217 F-ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHR 273
           +  +    +DTG GLER   + Q     Y+  ++  +I   +   G+ Y  E   IV+  
Sbjct: 245 YSYMDTYIVDTGYGLERWTWMSQGTATVYEA-IYPEMIDFLKDNAGLSYTDEETEIVSRA 303

Query: 274 --------------------------------------------VIVDHLRSSSFLIADG 289
                                                        I DH R+ ++++ DG
Sbjct: 304 ARLSGQLDIDDVDDVEAARGEIAAEIGVSVDELRDLVEPLEDIYAIADHCRTLAYMLGDG 363

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           I+P+N G GY+ R ++RR        G   PL          +M +   E  + +  I +
Sbjct: 364 IVPSNVGTGYLARMVLRRTKRLCDNAGVDAPL------DELVDMQAQRLEY-ENRDTIRD 416

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401
            +R+E E++ +TL+RG   ++ +     K  E +  +   +LYD+HG+  D++
Sbjct: 417 IVRTEVEKYRETLERGGRRVETLAEEYAKKGEPIPIEELIELYDSHGIQPDMV 469


>gi|199581810|gb|ACH89576.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581812|gb|ACH89577.1| alanyl-tRNA synthetase [Alpheus simus]
          Length = 190

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGXKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581796|gb|ACH89569.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581802|gb|ACH89572.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581804|gb|ACH89573.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581806|gb|ACH89574.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581808|gb|ACH89575.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581814|gb|ACH89578.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581816|gb|ACH89579.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581818|gb|ACH89580.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581820|gb|ACH89581.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581822|gb|ACH89582.1| alanyl-tRNA synthetase [Alpheus simus]
          Length = 190

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581630|gb|ACH89486.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581636|gb|ACH89489.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M      +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASXVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581798|gb|ACH89570.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L     E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDXVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|211827288|gb|AAH26611.2| Aars protein [Mus musculus]
          Length = 458

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/265 (35%), Positives = 135/265 (50%), Gaps = 21/265 (7%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFV 555
           V+E V+GQ+  VV D+T FYAE GGQ+ D G  +       D     + + Q +  G +V
Sbjct: 6   VDEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYV 63

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
            H     G L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD
Sbjct: 64  LHIGTIYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPD 122

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674
            LRFD T    +++ ++K  E+ VN +I    PV T+      A A  G  A+    Y D
Sbjct: 123 RLRFDFTAKGAMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPD 182

Query: 675 RVRVVSV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            VRVVS+     E  D      G + S   CGGTH+ ++       IV+E +I  GIRRI
Sbjct: 183 PVRVVSIGVPVSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRI 242

Query: 724 EAITGQRARSHLMGQDEKLKSLASF 748
            A+TG  A+  L   +   KSL++ 
Sbjct: 243 VAVTGAEAQKALRKSETLKKSLSAM 267


>gi|199581794|gb|ACH89568.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMM-HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L+  +   +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVXILHDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|218884411|ref|YP_002428793.1| alanyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766027|gb|ACL11426.1| alanyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 908

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 195/900 (21%), Positives = 363/900 (40%), Gaps = 171/900 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F +  GH ++    ++      L  T + +V F+   T G   P Y  +
Sbjct: 59  SLQEVREKFIGFLKSKGHGVVDPYPVLARWRNDLYLTIASIVVFQPAVTDGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R     +D+DNVG T  RH T FEM G  +F       Y+ E  +    +   
Sbjct: 119 VIIQPSIRL----SDIDNVGLTFGRHLTSFEMGGMHAFNKPGKFVYWVEGILDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D           D+  FK                   + +W     G  GP  E+
Sbjct: 175 KEIGIDL----------DDLVFK-------------------EGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL-PKMSIDTGMGLERMA 234
             D                   +E+  LV M ++  +   +++  P + +D G G+ER+A
Sbjct: 204 LVDG------------------MELATLVHMMYKVVDG--KYVENPVLVVDCGYGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV------------------ 276
              Q+    +   ++  L+   + V G++    +++   V +                  
Sbjct: 244 WFTQKTPTGFHA-IYGRLVNEYKDVLGVEEPSYDVLKKAVYLLSDKEIGGIHEYERLLRE 302

Query: 277 --------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                               DH R+ S +++DG++P+N G GY+ R ++RR +     LG
Sbjct: 303 LGFGDYVDEFVKTIYLYSALDHARTISLMLSDGVVPSNTGEGYLARLVIRRLLRNLARLG 362

Query: 317 YTEPLMMHLLPALCTEM------GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
                +  ++  L             Y +  + +  I + +  E  +F   + RG+ ++D
Sbjct: 363 VEPSRLTDVVQELLDRQVKYWKNDYIYGKFEKHRDYILDVVTMETSKFIDAVSRGIDIVD 422

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
            +L    +  + +      +YD+HG+P + + +     G+       F   + ++ S   
Sbjct: 423 KLLKKKRELLLED---LITIYDSHGIPPEFVAERAREHGVKVEIPGDFYSRIAQRHS--- 476

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
             S G+           +KEK         D+++ +       +V  + P +   N    
Sbjct: 477 --SPGV----------LVKEK---EHEFPEDVVKWASGFPATYRVFHENPYLTSVNA--- 518

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
             K +  +G+ +           + D+T  Y  AGGQ  DTG    +G   ++  V K  
Sbjct: 519 --KVLGVRGKYL-----------ILDRTVMYPWAGGQDHDTGFIEVNGRGYEVEYVGKVG 565

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + I   H + E   +     + + ID+  R +L  +H+ATH++  A   ILG HV Q G+
Sbjct: 566 DVII--HVLKEPVEINENTMVRVVIDWYRRYRLMKHHTATHIILAAARYILGDHVWQAGA 623

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
             T +  R D+TH K +TS +++ IE+  N II   + +      + +A       +   
Sbjct: 624 EKTIEKARLDITHHKSLTSEDVRKIEELANRIIEDRVDLRFHYTGKFEAENKYGLKIYQG 683

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G  Y+  +R+V +   D     +  C GTHV +T E+  + I++   I+ G+ R+E I  
Sbjct: 684 GAIYSPILRIVEIPGWD-----AQACFGTHVFNTSEVGGVKIINAERIQDGVIRLEFIAS 738

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-LQLIHAKRKL-------Q 780
            R    +   + ++    S L   QG++   V++I  EY K L+++   R L       +
Sbjct: 739 TRLVDKIHLLENEIGEALSILGSKQGDLASAVKKIKREYDKTLEVLDKYRDLMGKTIISK 798

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK------IQSGIIMLVGISKEK 834
              E+++   I D  ++   IS  D K +K V++ L  K      I +G ++ + +  EK
Sbjct: 799 ALTEEINICGI-DTVYVELPIS--DEKLVKQVLEELSLKHGVLTTIDTGELIEIAVKPEK 855


>gi|199581762|gb|ACH89552.1| alanyl-tRNA synthetase [Alpheus nuttingi]
          Length = 190

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 111/182 (60%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  L  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTPLFDAIQ 66

Query: 258 QVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K Y G       + I + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTL RG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKTLGRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581766|gb|ACH89554.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581768|gb|ACH89555.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581770|gb|ACH89556.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581774|gb|ACH89558.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581776|gb|ACH89559.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581778|gb|ACH89560.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581780|gb|ACH89561.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581782|gb|ACH89562.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581784|gb|ACH89563.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581786|gb|ACH89564.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581790|gb|ACH89566.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581792|gb|ACH89567.1| alanyl-tRNA synthetase [Alpheus panamensis]
          Length = 190

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RR 
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRG 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581764|gb|ACH89553.1| alanyl-tRNA synthetase [Alpheus formosus]
          Length = 190

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RR 
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRG 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|199581800|gb|ACH89571.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 109/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RRA
Sbjct: 67  KLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRA 126

Query: 309 MCYARLLGYTEPLMM-HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L+  +   +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDDVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|321442109|gb|ADW85469.1| ala-tRNA synthetase [Urodus decens]
          Length = 235

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 137/239 (57%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF +++     +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD DLF  L +A +  TG++     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDLFMPLFKAIQXGTGVRXYSGKVGADDSDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAIRYASEKLNAKPGFFGTLVWTVVA 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 177 ILGDVFPEIKKDPDSIIQIINEEEIQFLKTLTRGRNLLNRTMEKLSNSKVVPGDVAWRL 235


>gi|199581772|gb|ACH89557.1| alanyl-tRNA synthetase [Alpheus formosus]
          Length = 190

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 10/182 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMKYEGNNI---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K     +         + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RR 
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRG 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG  
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRGQK 186

Query: 368 LL 369
           LL
Sbjct: 187 LL 188


>gi|2316010|gb|AAC45550.1| alanyl-tRNA synthetase [Spiroplasma citri]
          Length = 136

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/134 (47%), Positives = 86/134 (64%), Gaps = 6/134 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           ++IR  +L+FF+   H  LPS SLIP +DP+L++ NSG+   K  F G++ P    +T  
Sbjct: 7   NAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTNS 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TKEFDLDQ 122
           QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+ L   K    D 
Sbjct: 67  QKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGFDP 122

Query: 123 RRLYITVYDEDEEA 136
            +LY+T+Y +D+EA
Sbjct: 123 AKLYVTIYKDDQEA 136


>gi|150403315|ref|YP_001330609.1| alanyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|189082112|sp|A6VJ32|SYA_METM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150034345|gb|ABR66458.1| alanyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 892

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 149/283 (52%), Gaps = 15/283 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FYAE GGQ  D G   G    +++ DVQKK  GI V H + +    +    + 
Sbjct: 528 VVLDKTLFYAEGGGQKYDIGQING----IEVIDVQKK-NGI-VFHKVSDISKFKEGDIVK 581

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            T++++NR +L  NH+ATH+++ A + +LG H+ Q GS +  +  R D+TH + I+  ++
Sbjct: 582 GTVNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSNVDTEKGRLDITHYERISREQV 641

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           K IE   N+I+   +PV +  M+R DA       +   G    D +R++ +E  D     
Sbjct: 642 KEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGGVVPGDTLRIIEIEGTD----- 696

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH S+T EI  + ++    I+ G+ R+E  TG  + S +   ++ L   A  L 
Sbjct: 697 VEACGGTHCSNTSEIGYIKVLKTERIQDGVERLEYSTGMGSVSEIAVLEDTLIDSAEILG 756

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +    +   V+  +EE+++ +      +LQ  V +L  +++AD
Sbjct: 757 IPNDQLPKTVKRFFEEWKEQK--KTIEELQKKVGELVKYELAD 797



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 189/446 (42%), Gaps = 111/446 (24%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F  FF + GH  +  S ++     D  L+   S  V    +  G  KPV   +   Q C+
Sbjct: 68  FTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNPLVIAQPCI 127

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ +   +D +
Sbjct: 128 RL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDDYKYWTDKTVEYCFELMNR-LGIDGK 182

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                                         IT  +++W     G  GPC E+       I
Sbjct: 183 T-----------------------------ITFIESWWEGG--GNAGPCYEV-------I 204

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
             G           +E+  LVFMQ+++   +   I P   +DTG G+ER A   Q     
Sbjct: 205 THG-----------VELATLVFMQYKKVGSEYEEI-PLKIVDTGYGIERFAWASQGTPTV 252

Query: 244 YDIDLFKHLIQASEQVTGMK----------------YEGNNIVNHRV------------- 274
           Y+  LF  +I+  ++  G+                  +  N+ + RV             
Sbjct: 253 YE-SLFSEVIEKLKEDAGIPGVDEKIMAESATLAGLMDIENVGDLRVLRQKVAEKIGMDV 311

Query: 275 ---------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE 319
                          I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y   +G + 
Sbjct: 312 DELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRYMEKIGISM 371

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
            +   ++      M   YPEL + K  I + L SE++++ +T++RG  +++ + +   K 
Sbjct: 372 SI-KDIISMQLENMKEIYPELSEMKEYIMDVLDSEEKKYIQTVNRGRGIVERMAA--SKS 428

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDIL 405
           EI   D+  +LYD++GLP +I++D++
Sbjct: 429 EITLDDL-IELYDSNGLPPEIVKDVV 453


>gi|159904900|ref|YP_001548562.1| alanyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|205830141|sp|A9A6Q2|SYA_METM6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159886393|gb|ABX01330.1| alanyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 892

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 197/394 (50%), Gaps = 37/394 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FYAE GGQ  D G  + D   ++++DVQKK  GI V H + +    +   ++ 
Sbjct: 528 VVLDKTLFYAEGGGQKYDIG-QLND---IEVSDVQKK-NGI-VFHKVSDISKFKEGDTVK 581

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            T++++NR +L  NH+ATH+++ A + +LG H+ Q GS +  +  R D+TH + I+  ++
Sbjct: 582 GTLNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSNVDTEKGRLDITHYERISREQV 641

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           K IE   N+++   +PV +  M+R DA       +   G    D +R++ +E  D     
Sbjct: 642 KEIERIANEMVLSKMPVNSTFMDRNDAEQKYGFTIYQGGVVPGDTLRIIEIEETD----- 696

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH S+T E+  + ++    I+ G+ R+E  TG  + S +   ++ L   A  L 
Sbjct: 697 VEACGGTHCSNTSEVGYIKVLKTERIQDGVERLEYSTGMGSVSEIAIIEDTLIDSAEILG 756

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVD- 805
           +    +   V+  +EE+++ +      +LQ  V +L  +++AD    V     ++ +V  
Sbjct: 757 IPNDQLPKTVKRFFEEWKEQK--KTIEELQKKVGELVKYELADKFEKVGDYEVLVEQVSG 814

Query: 806 -SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
              EL S+ D L   + + +I+L+      ++  L      L  R   V+L+ +   +  
Sbjct: 815 TPNELMSIADNLA--VGNKLIVLMN-----ESDYL------LCKRGENVELS-MKELIRN 860

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            G GGG+ ++AQ  G      +Q    ++  L K
Sbjct: 861 IGKGGGKDNLAQ--GKYSETKEQITEKISQILNK 892



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 191/447 (42%), Gaps = 113/447 (25%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F  FF + GH  +  S ++     D  L+   S  V    +  G  KPV   +   Q C+
Sbjct: 68  FTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNPLVIAQPCI 127

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+        +
Sbjct: 128 RL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVEYCFELM--------Q 175

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL                   G+    I  I   +++W     G  GPC E+       I
Sbjct: 176 RL-------------------GIDGKTITFI---ESWWEGG--GNAGPCYEV-------I 204

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G           +E+  LVFMQ+++  N  E   +P   +DTG G+ER A   Q    
Sbjct: 205 THG-----------VELATLVFMQYKKVGNDYEE--IPLKIVDTGYGIERFAWASQGTPT 251

Query: 243 NYDIDLFKHLIQASEQVTGMK----------------YEGNNIVNHRV------------ 274
            Y+  LF  +I+  ++  G+                  +  N+ + RV            
Sbjct: 252 VYE-SLFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKVAEKIGMD 310

Query: 275 ----------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                           I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y   +G +
Sbjct: 311 VDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRYMEKIGIS 370

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
             +   ++      M   YPEL + K  + + L +E++++ +T++RG  +++ + +   K
Sbjct: 371 MSI-KDIIAMQLENMKEIYPELSEMKEYVMDVLDAEEKKYIQTVNRGRGIVERMAA--SK 427

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDIL 405
            EI   D+  +LYD++GLP +I++D++
Sbjct: 428 SEITLDDL-IELYDSNGLPPEIVKDVV 453


>gi|134046268|ref|YP_001097753.1| alanyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|189082111|sp|A4FZA5|SYA_METM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|132663893|gb|ABO35539.1| alanyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 892

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 194/395 (49%), Gaps = 39/395 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T FYAE GGQ  D G   G    ++++DVQKK  GI V H + +    +   ++ 
Sbjct: 528 VLLDKTLFYAEGGGQKYDIGQLNG----IEVSDVQKK-NGI-VFHKVSDISKFKEGDTVK 581

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            T++++NR +L  NH+ATH+++ A + +LG H+ Q GS +  +  R D+TH + I+  ++
Sbjct: 582 GTLNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSNVDTEKGRLDITHYERISREQV 641

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           K IE   N+I+   +PV +  M+R D+       +   G    D +R++ +E  D     
Sbjct: 642 KEIERIANEIVLSKMPVNSTFMDRNDSEQKYGFTIYQGGVVPGDTLRIIEIEGTD----- 696

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH S+T E+  + ++    I+ G+ R+E  TG  + S +   ++ L   A  L 
Sbjct: 697 VEACGGTHCSNTSEVGYIKVLKTERIQDGVERLEYSTGMGSVSEIAVLEDILIDSAEILG 756

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV------ 804
           +    +   V+  +EE+++ +      +LQ  V +L  +++AD  F  H   EV      
Sbjct: 757 IPNDQLPKTVKRFFEEWKEQK--KTIEELQKKVGELVKYELAD-KFEKHGDYEVLVEQVS 813

Query: 805 -DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
               EL S+ D L   I + +I+L+      +   L      L  R   V+L+ +   + 
Sbjct: 814 GTPNELMSIADNLA--IGNKLIVLMN-----ENDYL------LCKRGENVELS-MKELIR 859

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             G GGG+ ++AQ  G      +Q    ++  L K
Sbjct: 860 NIGKGGGKDNLAQ--GKYSETKEQITEKISQILNK 892



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 194/447 (43%), Gaps = 113/447 (25%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F  FF + GH  +  S ++     D  L+   S  V    + +G  KPV   +   Q C+
Sbjct: 68  FTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNPLVIAQPCI 127

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+        +
Sbjct: 128 RL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVEYCFELM--------K 175

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL I     DE+                  +T  +++W     G  GPC E+       I
Sbjct: 176 RLGI-----DEKT-----------------VTFIESWWEGG--GNAGPCYEV-------I 204

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G           +E+  LVFMQ+++  N  E   +P   +DTG G+ER A   Q    
Sbjct: 205 THG-----------VELATLVFMQYKKVGNDYEE--IPLKIVDTGYGIERFAWASQGTPT 251

Query: 243 NYDIDLFKHLIQASEQVTGMK----------------YEGNNIVNHRV------------ 274
            Y+  LF  +I+  ++  G+                  +  N+ + RV            
Sbjct: 252 VYE-SLFSEVIEKLKKDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKVAEKIGMD 310

Query: 275 ----------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                           I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y   +G +
Sbjct: 311 VDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRYMEKIGIS 370

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
             +   ++      M   YPEL + K  I + L SE++++ +T++RG  +++ +   + K
Sbjct: 371 MSI-KDIIAMQLENMKEIYPELSEMKEYIMDVLDSEEKKYIQTVNRGRGIVERMA--VSK 427

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDIL 405
            EI   D+  +LYD++G+P +I++D++
Sbjct: 428 SEITLDDL-IELYDSNGIPPEIVKDVV 453


>gi|199581788|gb|ACH89565.1| alanyl-tRNA synthetase [Alpheus panamensis]
          Length = 186

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 10/178 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +  A +
Sbjct: 7   LEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPIFDAIQ 66

Query: 258 QVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           +++G K Y G       + I + +RV+ DH R+ +  ++DG +P N GRGYVLRRI+RR 
Sbjct: 67  KLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRRILRRG 126

Query: 309 MCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           + YA      +P M   L  +  E +  A+PE+ +     +  +  E+++F KTLDRG
Sbjct: 127 VRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTLDRG 184


>gi|332158554|ref|YP_004423833.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034017|gb|AEC51829.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 916

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 158/335 (47%), Gaps = 29/335 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FY E GGQ  DTG  + DG  +++T+VQK   G  + H + +  + R  + + 
Sbjct: 542 VVLDRTAFYPEGGGQPYDTGVLLVDGTEVKVTNVQKV--GRVILHKVEKPELFREGIEVH 599

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R Q   +H+ TH+L  AL  +LG HV Q GS +T D  R D++H K I+  EL
Sbjct: 600 GKIDWDRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEEL 659

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           + IE   N I+ +N  V    + R +A       L   G      +RV+++E  D     
Sbjct: 660 REIEMLANKIVMENRKVTWEWLPRTEAEQKYGFRLYQGGVVPGRTIRVINIEGWD----- 714

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH+ STG +  + I+    I+ G+ RI    G+ A        E LK  +  L+
Sbjct: 715 VQACGGTHLPSTGLVGPIKILRTERIQDGVERIIFACGEAAIKEWQKDRELLKRASQVLR 774

Query: 751 VSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVD 805
           V    +    E     W+E RK      K   +L V +L     +I D+ F+  ++    
Sbjct: 775 VPPEKLPETAERFFNEWKEARKEVEKLKKELAKLLVYELESKVERINDIEFIGEVV---- 830

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
               +  MD L++ ++        + + K+ +VLI
Sbjct: 831 ----EGSMDDLREAVEK-------LRRPKRVTVLI 854



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 206/479 (43%), Gaps = 130/479 (27%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSS-----SLIPCNDPTLMFTNSGMVPFKN-IFTGQEKP 56
            +  +R  FL+FF+K  HE+ P        ++P     ++   + ++ F+  + +G+  P
Sbjct: 58  TLDEMREKFLKFFEK--HEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADP 115

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAW 111
               +   Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA+
Sbjct: 116 PANPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAF 171

Query: 112 DLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +  TKE  +           ED                    IT  +N W  A  G  GP
Sbjct: 172 EFFTKELKMKP---------ED--------------------ITFKENPW--AGGGNAGP 200

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-----------KQERFI-L 219
             E+ +                  R +E+  LVFMQ+++             K E+++ +
Sbjct: 201 AFEVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVIIKGEKYVPM 242

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV--- 274
               +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+  N R+   
Sbjct: 243 ETKVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGVEKIDERILMENSRLAGM 301

Query: 275 ---------------------------------------IVDHLRSSSFLIADGILPANE 295
                                                  I DH ++ +F++ADG++P+N 
Sbjct: 302 FDIEDLGDLRYLREQVAKRVGISVEELEKAVRPYELIYAIADHTKALTFMLADGVVPSNV 361

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
             GY+ R ++R+++ + R LG   PL   ++     E+   +PE  + + +I E +  E+
Sbjct: 362 KAGYLARLLIRKSLRHLRELGLEVPL-AEIVAMHIKELHKTFPEFKEMEDIILEMIELEE 420

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +++ +TL RG  L+   ++ L K  +    L   V F  Y++HGL  +I+++I    G+
Sbjct: 421 KKYAETLRRGSDLVKREVAKLKKKGVKEIPLEKLVMF--YESHGLTPEIVKEIAEKEGI 477


>gi|259015957|gb|ACV89261.1| alanyl-tRNA synthetase [Neotyphloceras sp. BMW-2009]
          Length = 153

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 14/153 (9%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--DE------DEEAF 137
           HHTFFEMLGN+SFG YFK+     AW+LLT  F L   RLY+T +  DE      DEE  
Sbjct: 4   HHTFFEMLGNWSFGDYFKKEICAWAWELLTGVFKLPGDRLYVTYFGGDEASGLQPDEECK 63

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGE 195
           ++W  + G+    ++  +  DNFW M ETGPCGPCSE+ +D+  G  +P  +   + +  
Sbjct: 64  QIWLDL-GVLPSHVLPGSMKDNFWEMGETGPCGPCSELHYDRIGGRDVPHLV---NMDDP 119

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
             +EIWNLVF+Q+ ++      +LPK  ID GM
Sbjct: 120 DVLEIWNLVFIQYNRETDSTLKLLPKKHIDCGM 152


>gi|73668887|ref|YP_304902.1| alanyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|121697109|sp|Q46CS0|SYA_METBF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72396049|gb|AAZ70322.1| alanyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 923

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 179/387 (46%), Gaps = 19/387 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D T FYAE GGQ  D G         ++ DVQ   +G+ VH      G L      +
Sbjct: 536 IVLDNTFFYAEGGGQPADMGTIATAYAVYKVVDVQV-YDGVIVHTIENPDGNLDIRKGDI 594

Query: 573 LT--IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D + R  L+ +H+ATH+++ A   +LG+H+ Q G+    D  R D++H K I+  
Sbjct: 595 VNGKVDEKRRMTLARHHTATHIVNDAARKVLGTHIWQAGAQKFEDHSRLDLSHYKHISPD 654

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGV 688
           ELK IE   N ++ +N  VVT  M+R +A       L   G    +++RVV V     G 
Sbjct: 655 ELKQIELLANRMVMENKRVVTEWMSRTEAEQEYGFGLYQGGVPPGEKIRVVKV-----GD 709

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
              A C GTH  STG +  + I+    I+ G+ R+E   G  A   +   D  L   A  
Sbjct: 710 DVEA-CAGTHCVSTGVVGPIKILRTERIQDGVERVEFAAGVAAVRAMQKIDSLLSDSAKT 768

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE 803
           L V    +   VE  + E++ L+  + K K ++    +        ++A +  ++  I E
Sbjct: 769 LSVPPEQLPASVERFFGEWKDLKKENEKLKEEIARARVYRLLGGASEVAGLKVIAEFIPE 828

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            DS EL+     L K     ++ L+    E    V     + L    NA  L R  +K++
Sbjct: 829 ADSLELQKTATELLK--HEDVVTLLASDAEGVKLVASAGQKALSCGINAGSLVREMSKLV 886

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIA 890
             GGGGG+P +A  GG + +K   A+A
Sbjct: 887 -SGGGGGKPALAMGGGTDPSKIQDALA 912



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 117/477 (24%), Positives = 191/477 (40%), Gaps = 132/477 (27%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S +R  +L FF++ GH  +    ++      L  T + +  F+   T GQ  P    +
Sbjct: 59  DISQMREYYLSFFEEKGHTRINRYPVVARWRDDLYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE A++L  +LLT 
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTTFEMMAHHAFNKRDHEIYWKEHAMELCDELLTS 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD                              + ++  +  W  A  G  GPC E+ 
Sbjct: 175 -LKLDP-----------------------------LAVSYKEEPW--AGGGNAGPCVEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMS---IDTGMG 229
                                +E+  LVFM  +   K +  I      KM    +DTG G
Sbjct: 203 VHG------------------LELATLVFMDLKADKKGDVLIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------IVNHRV-------- 274
           LER     +     YD  LF  ++     + G+++E +N         N R+        
Sbjct: 245 LERFVWASKGSPTIYDA-LFPGIVNELMGLAGLEHELDNSEYANILAQNARLAGFMDVSE 303

Query: 275 ----------------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 QSNLLELRKKVASSIGMTVDKLSAIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLM----MHL--LPALCTEMGSAYPELIQAKLLIEETLRSE 354
            R ++RR +     L    PL     MH+  +P         YPE  +   +I++ L SE
Sbjct: 364 ARLVIRRTLRMMDDLDIRIPLSEIMDMHIKNMP--------EYPEFRENFPVIQDILVSE 415

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+F  T+++G  ++    SH  K  E +      +LYD+HG+P ++ +++    G+
Sbjct: 416 EEKFRNTMEKGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVASEIGV 472


>gi|321442095|gb|ADW85462.1| ala-tRNA synthetase [Podosesia syringae]
          Length = 235

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 134/239 (56%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ +D+     GG   +   + +    +EIWNLVF+QF ++      +LPK
Sbjct: 1   ETGPCGPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQFNREADGSLKLLPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNH 272
             ID G+GLER+ +V+Q K  NYD D F  L +A E+ TG +     +         + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRANYDTDFFTPLFEAIEKGTGARPYSGKVGEEDVDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGCPDNTGRGYVLRRILRRAIRYSSEKLNGKPGFFSSLVQTVVE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +    I E +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 177 ILGDVFPEITKDPQSIIEIINEEELQFLKTLSRGRNLLNRTIEKLNGSKTIPGDVAWRL 235


>gi|45357960|ref|NP_987517.1| alanyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|48428515|sp|P61710|SYA_METMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|44920717|emb|CAF29953.1| Alanyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 892

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 149/283 (52%), Gaps = 15/283 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FYAE GGQ  D G  + D   +++ DVQKK  GI V H + +    +   ++ 
Sbjct: 528 VVLDKTLFYAEGGGQKYDIG-QLND---IEVMDVQKK-NGI-VFHKVSDISKFKEGDTVK 581

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +++ NR +L  NH+ATH+++ A + +LG HV Q GS +  +  R D+TH + I+  ++
Sbjct: 582 GAVNWDNRLKLMRNHTATHVINAAATRVLGKHVWQTGSNVDTEKGRLDITHYERISREQV 641

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           K IE   N+I+   +PV +  M+R DA       +   G    D +R++ +E    G   
Sbjct: 642 KEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGGVVPGDTLRIIEIE----GTDV 697

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            A CGGTH S+T E   + ++    I+ G+ R+E  TG  + S +   ++ L   A  L 
Sbjct: 698 EA-CGGTHCSNTSECGYIKVLKTERIQDGVERLEYSTGMGSVSEIASLEDTLIDSAEILG 756

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +    +   V+  +EE+++ +      +LQ  V +L  +++AD
Sbjct: 757 IPNDQLPKTVKRFFEEWKEQK--KTIEELQKKVGELVKYELAD 797



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 191/447 (42%), Gaps = 113/447 (25%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F  FF + GH  +  S ++     D  L+   S  V    + +G  KPV   +   Q C+
Sbjct: 68  FTNFFDEKGHTPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNPLVIAQPCI 127

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+        +
Sbjct: 128 RL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDDYKYWTDKTVEYCFELM--------Q 175

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL                   G+    I  I   +++W     G  GPC E+       I
Sbjct: 176 RL-------------------GIDGKTITFI---ESWWEGG--GNAGPCYEV-------I 204

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G           +E+  LVFMQ+++  N  E   +P   +DTG G+ER A   Q    
Sbjct: 205 THG-----------VELATLVFMQYKKIGNDYEE--IPLKIVDTGYGIERFAWASQGTPT 251

Query: 243 NYDIDLFKHLIQASEQVTGMK----------------YEGNNIVNHRV------------ 274
            Y+  LF  +I+  ++  G+                  +  N+ + RV            
Sbjct: 252 VYE-SLFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKVAEKIGMD 310

Query: 275 ----------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                           I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y   +G +
Sbjct: 311 VDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRYMEKIGIS 370

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
             +   ++      M   YPEL   K  I + L +E++++ +T++RG  +++ + +   K
Sbjct: 371 MSI-KDIISMQLENMKEIYPELSAMKEYIMDVLDAEEKKYIQTVNRGRGIVERMAA--SK 427

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDIL 405
            EI   D+  +LYD++GLP +I++D++
Sbjct: 428 SEITLDDL-IELYDSNGLPPEIVKDVV 453


>gi|330973620|gb|EGH73686.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 199

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 33/231 (14%)

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSG 439
           ++ G+V FKLYDT+G P+D+  DI   R L  +D   F + ++ QR RAR A S G+   
Sbjct: 1   MVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LDEAGFEREMDAQRVRARSASSFGMD-- 57

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
                + SL +   ATQF GY                        T G +S+V A+ ++G
Sbjct: 58  -----YNSLVKVDVATQFTGYSA----------------------TTGSASVV-ALYKEG 89

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           + V     G++  V+ D TPFYAE+GGQ+GD+G       R  ++D  K   G F+HH +
Sbjct: 90  QSVSHLNEGEEGVVILDITPFYAESGGQIGDSGFLQAGDARFDVSDTTKTG-GAFLHHGV 148

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           V  G L     +   +  + R    +NHSATHLLH AL  +LG HV Q GS
Sbjct: 149 VASGSLSVGAQVETQVADEVRDATKLNHSATHLLHAALRQVLGEHVQQKGS 199


>gi|297724655|ref|NP_001174691.1| Os06g0245800 [Oryza sativa Japonica Group]
 gi|52076744|dbj|BAD45655.1| alanyl-tRNA synthetase-like [Oryza sativa Japonica Group]
 gi|255676887|dbj|BAH93419.1| Os06g0245800 [Oryza sativa Japonica Group]
          Length = 326

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 160/291 (54%), Gaps = 31/291 (10%)

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  NNY+ DL   +I+ 
Sbjct: 42  RFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNNYETDLIFPIIEK 101

Query: 256 SEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGYV+RR++RR +   
Sbjct: 102 AASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGYVVRRLIRRVVRTG 161

Query: 313 RLLGYTE-----------PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RL+G              P +  +  +L TE+    P++   +  I   L+ E+ RF +T
Sbjct: 162 RLIGIRGDGHGNSEGAFLPSLAEVAISLSTEID---PDVESRRKSILGELQREELRFVQT 218

Query: 362 LDRG-------LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           L+RG       L        + G    L+G   F LYDT+G P++I  +I   RG+  +D
Sbjct: 219 LERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEISGERGVI-VD 277

Query: 415 IISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +  F+  +E QR +++A  + + L  G   +I  S+ +    T+F+G D +
Sbjct: 278 MKGFDMEMENQRKQSQAAHNVVKLSVGNETEIVKSIPD----TEFLGSDTI 324


>gi|161527876|ref|YP_001581702.1| alanyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|205830161|sp|A9A565|SYA_NITMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160339177|gb|ABX12264.1| alanyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 889

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 183/391 (46%), Gaps = 30/391 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T FYA  GGQ  D G   G     ++ +V K A+ I VH   +E G+ +   ++ 
Sbjct: 520 IVLDRTSFYARGGGQEPDFGSIAG----FKVINVDKHAD-IIVHQ--LEGGVPKEGETVS 572

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R  ++ NH++TH+++ +   +LGS + Q+ +    D  R D+TH   +++ E+
Sbjct: 573 CKVDETRRSNITKNHTSTHIINASSRKVLGSWIWQHSAFKDDDHARLDITHHSSLSNDEV 632

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDA-------IASGAAALLGTKYNDRVRVVSVEYED 685
           + IED  ND+I +N PV     +R  A       I  G    + +     VR+VS+E +D
Sbjct: 633 QKIEDEANDMIKKNYPVKINYYDRGTAEQKYGFRIYQGGVVPVKS-----VRIVSIEDKD 687

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTHV  TG+I L+ I     I+ G+ R+E ++G  A  +   Q+++ K  
Sbjct: 688 -----IEACGGTHVKKTGDIELIKITKTKRIQDGVVRLEFVSGPNAFEYEKQQEQESKRK 742

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           A      +     R E   +   K+ ++  K     +VE    +    + F +   S+ D
Sbjct: 743 AEEAVAKEQLEKQREENKSKAREKIPVLLEKVLAGEDVESDGINTKGKLCFTAS--SDYD 800

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
               ++    L  K  +     V    E   ++ ++V        NA ++A+  A +LGG
Sbjct: 801 DYFHQNFGKKLVGKDSTAAFCGVF---EAGPTIRVMVFSGEQSGVNAGEIAKKIASILGG 857

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GGG     AQ GG + +K D+AI+   S +
Sbjct: 858 SGGG-DAKFAQGGGKDTSKKDEAISKAKSMI 887



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 156/393 (39%), Gaps = 103/393 (26%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAVTTVQKCVR 69
           EFF KN H  +    ++      L FT + +V F+ +   +   E P    +   Q C+R
Sbjct: 81  EFFVKNNHTSVSRYPVVCRWRDDLYFTIASVVDFQRVMGSKVVFEFPA-NPLVVPQTCLR 139

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFS---FGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
                 DL+NVG T RH + F M+G  S    GGY+K+  + L + LLT++F        
Sbjct: 140 ----FKDLENVGVTGRHFSSFCMIGQHSVPDLGGYWKDECVDLDYRLLTEQF-------- 187

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
                             G++ D+++ +   ++ W  A  G  GP  E +F QG      
Sbjct: 188 ------------------GINKDEVVFV---EDVW--AGGGSFGPSLE-YFVQG------ 217

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD- 245
                      +E+ N VF +F Q    +   L +  ID G GLER A +       YD 
Sbjct: 218 -----------LELGNAVFTEF-QGELGKHTTLDQRVIDMGAGLERFAWITMGTPTAYDC 265

Query: 246 --------------ID-----LFKHLIQASE---------QVTGMKYEGNNIVNHR---- 273
                         ID     L K+  + ++         QV  +  +   I + +    
Sbjct: 266 CFGPINEKLFGTIGIDSDSEILRKYFTEIAKEIDHYDDLNQVRRLAVKNAGITDEQMQKM 325

Query: 274 --------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                   +I DHLR+  F I DG LP+N G GY LR ++RR       L     +   L
Sbjct: 326 ITPLEGMYLIADHLRTLIFAITDGALPSNVGGGYNLRMMLRRINATISKLNLKLNI-DDL 384

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +      +   YPEL + +  ++  L+ E  R+
Sbjct: 385 IDLHVDYLKDTYPELDEKRDDVKSILKLESARY 417


>gi|150400126|ref|YP_001323893.1| alanyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|189082114|sp|A6US09|SYA_METVS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150012829|gb|ABR55281.1| alanyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 892

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 137/259 (52%), Gaps = 13/259 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ D+T FYAE GGQ  D G   G    + + DVQKK  GI V H +++    +    + 
Sbjct: 528 IILDRTVFYAEGGGQKYDIGQISG----VDVVDVQKK-NGI-VFHKVLDISKFKEGNLVK 581

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ++++NR +L  NH+ATH+++ AL  +LG HV Q GS +  +  R DVTH + I+  E+
Sbjct: 582 GELNFENRLKLMRNHTATHVINAALKQVLGKHVWQTGSNVDTEKGRLDVTHYERISRKEI 641

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           K IE   N+I+    PV  + M+R DA       +   G    D +R+V ++    G+  
Sbjct: 642 KEIEKIANEIVLLGKPVTCKFMDRNDAEQEYGFKIYQGGVVPGDTLRIVEID----GIDV 697

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            A CGGTHV++T EI  + ++    I+ G+ R+E  TG  +   +   ++ L   A  L 
Sbjct: 698 EA-CGGTHVTNTSEIGYIKVLKTERIQDGVERLEYSTGMGSIFEIAALEDILLDSAEVLG 756

Query: 751 VSQGNVVGRVEEIWEEYRK 769
           V   N+    +  +EE+++
Sbjct: 757 VPIENLPKTAKRFFEEWKE 775



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 189/449 (42%), Gaps = 117/449 (26%)

Query: 11  FLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
           F  FF + GH  +  S +I     D  L+   S  V    +  G  KPV   +   Q C+
Sbjct: 68  FTNFFDERGHSPVKRSPVIAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNPLVITQPCI 127

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQR 123
           R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++L ++L+ K       
Sbjct: 128 RL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVELCFELMQK------- 176

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
                                G+    I  I   +++W     G  GPC E+       I
Sbjct: 177 --------------------LGIDGHTITFI---ESWWEGG--GNAGPCYEV-------I 204

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMA------- 234
             G           +E+  LVFMQ+++   N +E   +P   +DTG G+ER A       
Sbjct: 205 THG-----------VELATLVFMQYKKVGNNYEE---IPLKIVDTGYGIERFAWASQGTP 250

Query: 235 --------TVLQEKTNNYDIDLFKHLIQAS----------EQVTGMKYEGNNI------- 269
                    ++++   N +I +    I A           E V  +K     +       
Sbjct: 251 TVYEALFSDIIEKLKKNANIPIVDEKIMAESATLAGLMDIENVGDLKALRQKVAEKIGMD 310

Query: 270 VNH-----------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           VN              I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y   +G +
Sbjct: 311 VNELDRLISPLEYIYAISDHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRYMEKVGIS 370

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG- 377
             +   +L  L   M   YPELI  K  I + L SE++++ +T+++G     G++  +  
Sbjct: 371 YSIKEIILMQL-ESMKEVYPELIGMKDYIMDVLDSEEKKYIQTVNKG----RGIVERMTK 425

Query: 378 -KDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            K EI   D+   LYD++GLP +I++DI+
Sbjct: 426 LKSEITLNDL-INLYDSNGLPPEIVKDII 453


>gi|241998228|ref|XP_002433757.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215495516|gb|EEC05157.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 419

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 190/414 (45%), Gaps = 51/414 (12%)

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
           C   + +   +T+V  +  G  VH   +  G LR    L L ID Q R+ +  NH+ TH+
Sbjct: 3   CETNEDLEFAVTEVHTQG-GYVVHIGRLISGTLRVGDKLKLAIDEQRRKLVMNNHTGTHI 61

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL  +L +   Q GS + PD LRFD  + KP++ AE+K+ E +  ++I++N  V  +
Sbjct: 62  LNFALRKVLTAEADQRGSLVAPDRLRFDFANKKPMSPAEVKAAEQSAVELISKNGEVYAK 121

Query: 653 IMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED---------GGVHSSALCGGTHVS 700
                 A A  G  A+    Y D VRVVS  V  +D         G + S   CGGTH+ 
Sbjct: 122 DSPLSIAKAIQGLRAVFNETYPDPVRVVSIGVPVDDLMADPSSPAGSLTSIEFCGGTHLK 181

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----QDEKLKSLASFLKVSQG-- 754
             G +    I +E +I  GIRRI A+TG  A   L      Q+E  +  A   KV+Q   
Sbjct: 182 RAGHVGDFVITTEEAIAKGIRRIVALTGPEAAKALKKAEHYQNEVNRIKAEGAKVTQAAQ 241

Query: 755 --NVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS------ 798
              +V ++ E+ EE        ++K +L    + L+  ++DL     A    M+      
Sbjct: 242 GKELVKQLVELTEEISQSNISYWKKDELRTELKNLKKQLDDLDRSNKAQAQQMAIENVKK 301

Query: 799 ---------HIISEVDSKELKSVMDALQKKIQS----GIIMLVGISKEK-KASVLIVVTE 844
                    +I+  ++  +    +DA  K++++       M      EK K   L  V +
Sbjct: 302 LLEQKKDSEYIVHALEVGDNAKALDAALKQVRTITPNAAAMFFSCDAEKGKVICLSSVPK 361

Query: 845 DLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D++ R   A    +  ++V+ GG GGGR   AQ+ G N +  D+A+    +F K
Sbjct: 362 DIVARGLTANGWIKEVSEVI-GGKGGGREESAQAIGNNVSSLDKALEVAHNFAK 414


>gi|299561752|gb|ADJ36948.1| alanyl-tRNA synthetase [Taeniaptera trivittata]
          Length = 143

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 88/146 (60%), Gaps = 14/146 (9%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAF 137
           HHTFFEMLGN+SFG YFK+     AW+ LT+  +L + RLY+T +  DE        E  
Sbjct: 2   HHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLNLPKDRLYVTYFGGDEASGLGPDLECK 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGE 195
           ++W  + GL  + I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +  
Sbjct: 62  QIWTDL-GLRPEHILPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDP 117

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPK 221
             +EIWNLVF+Q+ ++      +LPK
Sbjct: 118 DVLEIWNLVFIQYNREPDGSLSLLPK 143


>gi|207108302|ref|ZP_03242464.1| alanyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 334

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 136/255 (53%), Gaps = 17/255 (6%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H K +   EL+ +ED V
Sbjct: 34  RLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLV 93

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I ++L      M    A   GA AL   KY + VRVVS  +++  +    LCGG HV
Sbjct: 94  NAQIFKHLTSQVEHMPLNQAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHV 148

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK    +V+  
Sbjct: 149 ENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAG 206

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           + ++ E  +  Q    K  + +   DL   KI  VN +  ++ + D KE+   +D L+ K
Sbjct: 207 INKLKESVKNSQ----KAPVSM---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSK 256

Query: 820 IQSGIIMLVGISKEK 834
            +  + M+     E+
Sbjct: 257 HERLLAMVFKKENER 271


>gi|77407177|ref|ZP_00784160.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77174212|gb|EAO77098.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 164

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 6/128 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T  
Sbjct: 7   AQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD  +
Sbjct: 67  QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122

Query: 123 RRLYITVY 130
            +LY+T Y
Sbjct: 123 DKLYMTYY 130


>gi|219851912|ref|YP_002466344.1| alanyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219546171|gb|ACL16621.1| alanyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 913

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 19/321 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ DQT FY E GGQ  DTG  +     +++ D  K   G+ +H   +  G L+    + 
Sbjct: 537 VILDQTLFYPEGGGQPADTGTLVTAESMVRVEDTIKMG-GVILHK--ISGGSLKRGERVK 593

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R  L  +H+ATH+L HA   +LG+H+ Q+G+    +  R D+ H K IT  EL
Sbjct: 594 GMVDEDRRWSLMRHHTATHILLHASKEVLGAHIHQSGAQKGSESSRIDIRHFKHITPEEL 653

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           + IE   N I+ +N P+  +I  R  A       L   G      +R+V V   DG + +
Sbjct: 654 RRIEVKANQIVMKNRPISIKIEERTKAEQKYGFGLYQGGVPPGKEIRIVKV---DGDIEA 710

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C GTH  STGE+  + I+    I+ GI RIE   G+ A + +   ++ L   A  L+
Sbjct: 711 ---CAGTHCKSTGEVGAIKILRVEHIQDGIERIEFSAGRAAITAMQHVEQLLDESAQTLR 767

Query: 751 VSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           +   N+   V+  + E+    ++++ + A R + L ++++    +  VN +   I +VD 
Sbjct: 768 IQPENLPSSVQRFFTEWKERGKEVERLRA-RLVDLELQNVRYESVRGVNLVIKEI-DVDP 825

Query: 807 KELKSVMDALQKKIQSGIIML 827
            +L S+   L K    G+ +L
Sbjct: 826 SQLASLARKLSK--NDGVALL 844



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/471 (22%), Positives = 176/471 (37%), Gaps = 122/471 (25%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  +L FF+++GH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  TLDEMREAYLSFFERHGHTRIDRYPVAARWRDDIYLTIASIADFQPYVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+  ++L       
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTLFEMMAHHAFNSPKEEIYWKDHTVELC-----D 168

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           EF                        +  +  D +  IT  ++ W     G  GP  E+ 
Sbjct: 169 EF------------------------VHSIGGD-LNAITYKEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---------QERFILPKMSIDTG 227
                   GGL           EI  LVFM   +Q            + + +    +DTG
Sbjct: 202 I-------GGL-----------EIATLVFMSLGRQKTDHPPVELEGNQYYPMSTRVVDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-----------------------MKY 264
            GLERM          YD  +F  ++       G                       M  
Sbjct: 244 YGLERMVWASTGSPTIYDA-VFPDMVSTIMHSAGLDHHLDNPESTKMLALNAKFAGLMDI 302

Query: 265 EGNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGY 299
            G N+   R                          I DH R  ++++ D I+P+N   GY
Sbjct: 303 SGANLFQLRKKVAATIDVPIEKLQKMIVPIEQVYTIADHTRCLAYMLGDLIVPSNVREGY 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR +     L     L   L+     ++G++  E  Q   +I E +  E E++ 
Sbjct: 363 LARLVLRRTLRVMNDLKMDIDL-GDLIEMQINKIGNSQFE--QNLDVIHEIVDREVEKYA 419

Query: 360 KTLDRGLVLLDGV-LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            T++RG  ++  V  ++  K E +       LYD+HGLP ++++++    G
Sbjct: 420 ATIERGTRIIQKVATTYKKKSEKVPLQEVVTLYDSHGLPPELIKEVASKEG 470


>gi|262301359|gb|ACY43272.1| ala-tRNA synthetase [Ischnura verticalis]
          Length = 238

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/242 (38%), Positives = 133/242 (54%), Gaps = 20/242 (8%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+QF +++     +LP 
Sbjct: 1   ETGPCGPCSELHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPH 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG--------NNIVNH 272
             ID G+GLER+ +V+Q K +NYD DLF  +  A ++ T    Y G           + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRSNYDTDLFMPIFDAIQKGTNAAPYTGRVGADDVDGKDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH R+ +  +ADG  P N GRGYVLRRI+RR + YA      +P     L     E
Sbjct: 117 RVLADHARTLTIALADGGRPDNTGRGYVLRRILRRGIRYATEKLNAKPKFFGTLVHTVVE 176

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAF 388
            +G  +PEL +    I + +  E+E+F KTL RG  LL+  +  L       +L GDVA+
Sbjct: 177 LLGDTFPELSKDVSGIIDIINEEEEQFLKTLSRGRNLLNRTVEKLTGATSGSVLPGDVAW 236

Query: 389 KL 390
           +L
Sbjct: 237 RL 238


>gi|212224880|ref|YP_002308116.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212009837|gb|ACJ17219.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 909

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 211/474 (44%), Gaps = 123/474 (25%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+  + +G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E                           G+ A+    IT  +N W  A  G  GP  E+ 
Sbjct: 174 EL--------------------------GMKAED---ITFKENPW--AGGGNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ-----------QNKQERFI-LPKMSI 224
           +                  R +E+  LVFMQ+++           + K ++++ +  M +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDKYVPMETMVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------------- 269
           DTG GLER+  + Q     YD  +  ++I+  +++ G++     I               
Sbjct: 245 DTGYGLERLVWMSQGTPTAYDA-VLGYVIEPLKRMAGIEKIDERILMENSKLAGMFDIED 303

Query: 270 ----------VNHRV-------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                     V  RV                   I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLRVLRQEVAKRVGISVEELEKLVRPYELIYAIADHTKALTFMLADGVIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   PL   ++     E+  ++PE  + + +I + +  E++R+ +
Sbjct: 364 ARLLIRKSIRHLRELGLEMPL-AEIVAMHIKELSPSFPEFKEMEDVILDIINVEEKRYQE 422

Query: 361 TLDRGLVLLDGVLSHL---GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           TL RG  L+   ++ L   G++EI L   + F  Y++HGL  +I+ +I    G+
Sbjct: 423 TLRRGSDLVKREIAKLKKKGENEIPLEKLILF--YESHGLTPEIVAEIAQKEGV 474



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 125/391 (31%), Positives = 192/391 (49%), Gaps = 28/391 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FY E GGQ  DTG   G    +++T+VQK   G  + H + E    +  M++ 
Sbjct: 539 VVLDRTAFYPEGGGQPYDTGELNG----VKVTNVQKV--GKVILHRVEEPEKFKEGMTVH 592

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             I++  R Q   +H+ TH+L  AL  +LG HV Q GS +  D  R D++H K IT  EL
Sbjct: 593 GRINWDRRIQHMRHHTGTHVLMGALVRVLGKHVWQAGSQLHTDWARLDISHYKRITEEEL 652

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDR-VRVVSVEYEDGGVHS 690
           + IE   N I+ +N  V    + R +A +  G     G     R +RV+ +  ED  V +
Sbjct: 653 REIERLANRIVMENRRVAWEWLPRTEAEMKYGFRLYQGGVVPGRIIRVLRI--EDWDVQA 710

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH+ +TG +  + I+    I+ G+ RI    G+ A + +   +  LK  +   +
Sbjct: 711 ---CGGTHLPNTGLVGPIKILRTERIQDGVERIIFAAGEAAVNWMQETERILKRTSEVFR 767

Query: 751 VSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD 805
           V    +    GR    W+E RK      K   +L V +L     ++ +V F+  ++ E  
Sbjct: 768 VPPEKLPETAGRFFNEWKEARKEVERLRKELAKLLVYELEDRIERVGEVEFIGAVV-EGT 826

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
             +L+   + L+K     +++L  IS+E      +V   D LD   A +LA++   V  G
Sbjct: 827 MDDLREAANKLRK--DKRVVLL--ISREGH---FVVAVGDGLD-LKAGELAKVITSV-AG 877

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGGGR  +AQ    N  KA++AIA V   L
Sbjct: 878 GGGGGRKELAQGRIKNPLKAEEAIAEVKKRL 908


>gi|56752605|gb|AAW24516.1| SJCHGC03396 protein [Schistosoma japonicum]
          Length = 122

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 5/106 (4%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61
           +R  F +FF   GH  + SSS IP NDP+L+F N+GM  +K IF G   P       +  
Sbjct: 10  LRQQFFDFFNSRGHVYVHSSSTIPHNDPSLLFANAGMNQYKPIFQGTADPNSELGQLKRA 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAI 107
              QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK++ +
Sbjct: 70  YNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKKHV 115


>gi|262301365|gb|ACY43275.1| ala-tRNA synthetase [Plathemis lydia]
          Length = 238

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 135/242 (55%), Gaps = 20/242 (8%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSE+ FD+     GG   +   + +    +EIWNLVF+QF +++      LP 
Sbjct: 1   ETGPCGPCSELHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFIQFNRESNGSLKSLPS 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNH 272
             ID G+GLER+ +V+Q K +NYD DLF  +  A ++ T         G + +    + +
Sbjct: 57  KHIDCGLGLERLVSVIQNKRSNYDTDLFMPIFDAIQKGTNAPQYTGKVGAEDKDGKDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCT 331
           RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA      +P     L+  +  
Sbjct: 117 RVLADHARTLTIALADGGRPDNTGRGYVLRRILRRAIRYATEKLNAKPQFFGSLVHVVVD 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAF 388
            +G  +PEL +    I + +  E+E+F KTL RG  LL+  +  L       +L G+VA+
Sbjct: 177 LLGDTFPELKKDVSGIIDIINEEEEQFLKTLTRGRNLLNRTVEKLTGGASGTVLPGEVAW 236

Query: 389 KL 390
           +L
Sbjct: 237 RL 238


>gi|37521918|ref|NP_925295.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|35212917|dbj|BAC90290.1| gll2349 [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 12/217 (5%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
              +PF AE  GQ  D G    + + + +  V+++   +++H   V+RG L+   ++   
Sbjct: 61  LSHSPFLAEGSGQACDQGVLAAENLVVAVEAVRRQG-AVYLHKGKVQRGELKVGETVQAQ 119

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++   RR +  +HSA HLLH AL  +LG+ + Q G+    D LRF+    + +   E+  
Sbjct: 120 VNAIRRRLVQTHHSAVHLLHAALRRVLGAEIEQRGALAASDRLRFEFAAPQSLGGQEVAR 179

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSS 691
           +E  VN  + +  P+    M  E A   GA    G +Y ++VRV+    + +E       
Sbjct: 180 VEQVVNLWVLEGHPLGVETMPAEKARQIGALPFPGERYGEQVRVIGTPEIGFE------- 232

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            LCGGTHVS+T EI    IV  S   AG+RR+EA+ G
Sbjct: 233 -LCGGTHVSNTIEIGPFKIVGHSEPEAGVRRLEAVAG 268


>gi|328880599|emb|CCA53838.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 196

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/197 (35%), Positives = 105/197 (53%), Gaps = 17/197 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           I  TF+E+F++ GH  +  S+L+P     ++FT SGM P      G+  P+ + +  VQ+
Sbjct: 6   IVRTFVEYFEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGRRLVDVQR 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R      DLD VG    H T FEMLG +S G Y   R++   + LLT+ F +D   L+
Sbjct: 66  CLRT----TDLDEVGDAT-HLTVFEMLGTWSLGDYEGPRSLDWGYGLLTEGFGIDPGLLH 120

Query: 127 ITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF-FDQ 179
            TVY      + D+ + +LW+   G+     + +T  DN+WS   TGPCGP SEIF +++
Sbjct: 121 ATVYSGDGRTERDDASLELWQD-RGVP----VELTLQDNWWSNGPTGPCGPDSEIFLWER 175

Query: 180 GECIPGGLPGSSEEGER 196
           G   P      +  G R
Sbjct: 176 GTPRPAPRRPGTTAGSR 192


>gi|282165634|ref|YP_003358019.1| alanyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282157948|dbj|BAI63036.1| alanyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 863

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 138/272 (50%), Gaps = 34/272 (12%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V+VV D+T FY   GGQ GDTG   G    +++ DV K+ +G+ VH  ++E  +      
Sbjct: 517 VKVVLDRTLFYPLGGGQAGDTGFMNG----IKVKDVYKQ-DGVVVH--VLESPLPADAKR 569

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V  +D   RR LS +H++TH++++A   +LG HV Q G+  TP+  R D+TH + +T A
Sbjct: 570 VVGEVDKDRRRILSAHHTSTHIVNYAARKVLGDHVWQAGAEKTPEKARLDITHYESLTFA 629

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L+ IE   N ++ +N+PV    ++R +A           +Y+ R+      Y+ G V  
Sbjct: 630 QLQEIERVANGLVMENVPVHVEELSRTEA---------ERRYSMRI------YQGGAVPG 674

Query: 691 SAL------------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
             L            CGG HV +T ++  + ++S   I+ G+ R+E  +   + + +   
Sbjct: 675 KVLRIIRIPGYDVEACGGIHVDNTAKVGFIKMLSSERIQDGVVRLEFKSLDNSLNEVQYH 734

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           D  LK ++    V   ++       + E+++L
Sbjct: 735 DRLLKEVSDLWGVGYDDIPKTAARFFNEWKEL 766



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 168/441 (38%), Gaps = 107/441 (24%)

Query: 11  FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVR 69
           +++ F++ G+  L     +      L F  +G+  F+  + +G+ +P   AV   Q C+R
Sbjct: 74  YVKTFEQWGYVPLERYPTVARWYEDLYFVAAGINDFQPYVVSGELEPPAPAVLEPQFCLR 133

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRR 124
                ND+DNVG T RH+T F M+G  +F       YFKE  I    + LTK        
Sbjct: 134 ----FNDIDNVGITGRHYTGFIMVGQHTFNTPEKHVYFKEEGIAQIQEFLTKGL------ 183

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
                               G+ A +I+    +++ W  A  G  GP  E F        
Sbjct: 184 --------------------GIPAHEIL---FHEDVW--AGGGNFGPSIEYF-------- 210

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                      R +E+ N V+MQ+EQ     R +  K+ ID G GLER A   Q    +Y
Sbjct: 211 ----------SRGLELGNQVYMQYEQLPDGFRELKTKV-IDMGAGLERWAWFSQGLPMSY 259

Query: 245 DIDLFK----------HLIQASEQVTGMKYEG--------------NNIVNH-------- 272
           D    K          +      Q    KY G              N+I           
Sbjct: 260 DATFPKTMDFLYTKTGYRPDPEFQARFAKYAGILNVDELEDAHSAWNDIAGQMGMSLDEL 319

Query: 273 ----------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
                       I DH RS    I DG LP+N G GY LR ++RR    A   G    L 
Sbjct: 320 KGAVYKNRALYAIADHTRSLLVAIHDGALPSNVGGGYNLRNLLRRCWTLADQYGLDVDL- 378

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             +      E GS Y EL     L  + +  E +R+ ++  +   ++  ++      E  
Sbjct: 379 NDVFRCHIDEFGSWYTELKDYGSLF-DIIDVEKKRYDESKQKSQNIIKRMVK---SKEAF 434

Query: 383 NGDVAFKLYDTHGLPLDIMQD 403
             +   +LYD+ G+  +++++
Sbjct: 435 TPEKLVELYDSQGVAPEMIKE 455


>gi|21227588|ref|NP_633510.1| alanyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|24418696|sp|Q8PWU0|SYA_METMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|20905972|gb|AAM31182.1| Alanyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 926

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 188/389 (48%), Gaps = 25/389 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH---HAIVERGILRTEM 569
           VV D T FYAE GGQ  D G  + +    ++ DVQ   EG+ +H   +   E  I + E+
Sbjct: 536 VVLDNTFFYAEGGGQPADIGTIVAEDTVYRVVDVQV-YEGVILHTIENPGKELAITKGEL 594

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +D + R  L+ +H+ATH+++ A   +LG H+ Q G+    D  R D++H K I+ 
Sbjct: 595 -ITGKVDEKRRMTLARHHTATHIVNDAARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISP 653

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGG 687
            E++ IE   N  + +N  VVT  M R +A       L   G    +++R+V V     G
Sbjct: 654 EEIRQIELLANRTVMENKRVVTEWMPRTEAEQVYGFGLYQGGVPPGEKIRIVKV-----G 708

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-------QRARSHLMGQDE 740
               A CGGTH +STG I  + I+    I+ G+ RIE   G       Q+  S L+   +
Sbjct: 709 DDVEA-CGGTHCTSTGIIGPIKILKTERIQDGVERIEFAAGTAAVRAMQKLESLLVDSSK 767

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L      L VS     G  +++ +E  +L+   A+ ++   + D S  +++ +  ++  
Sbjct: 768 TLSVPPEHLPVSVDRFFGEWKDLKKENERLKEELARSRVYRMLGDAS--EVSGLKVITEQ 825

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +S  DS EL+ +   L K     ++ L+    E    V     + +    NA +L R  +
Sbjct: 826 VSGADSLELQKIATELLK--TENVVALLASDFEGVKIVASAGEKAMKCGVNAGNLVREMS 883

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           K++ GGGGGG+P +A  GG +  +   A+
Sbjct: 884 KIV-GGGGGGKPALAMGGGTDPTRIQDAL 911



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 194/477 (40%), Gaps = 132/477 (27%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+S +R  +L FF+  GH  +    ++      +  T + +  F+   T GQ  P    +
Sbjct: 59  NISEMREYYLSFFEARGHTRINRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE  ++L  +LL  
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTNFEMMAHHAFNRRDNEIYWKEHTLELCDELLNS 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                    K++ L+      +T  +  W  A  G  GPC E+ 
Sbjct: 175 ------------------------LKVNPLA------VTYKEEPW--AGGGNAGPCVEV- 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMS---IDTGMG 229
                 I  GL           E+  LVFM  +   K +  I      KM    +DTG G
Sbjct: 202 ------IVHGL-----------ELATLVFMDLKTDKKGDIEIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----NIV--NHRV-------- 274
           LER     +     YD  LF  ++     + G+++E N     NI+  N R+        
Sbjct: 245 LERFVWASRGSPTIYDA-LFPGIVNELMGLAGIEHELNDSEYANILAQNARLAGFMDVSE 303

Query: 275 ----------------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 KANLMELRKKVASSIGMTVDKLSAIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLM----MHL--LPALCTEMGSAYPELIQAKLLIEETLRSE 354
            R ++RR +   + L    PL     MH+  +P         YP   +   +I++ L SE
Sbjct: 364 ARLVLRRTLRMMKDLDIRIPLSEIVDMHIKNMP--------EYPGFRENFPVIQDILESE 415

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+F  T++RG  ++    SH  K  E +      +LYD+HG+P ++ +++    G+
Sbjct: 416 EEKFNTTMERGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVAAEIGV 472


>gi|27982009|gb|AAM94643.1| alanyl tRNA synthetase [Spironucleus barkhanus]
          Length = 623

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 133/516 (25%), Positives = 219/516 (42%), Gaps = 76/516 (14%)

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR--------LLGYTEPLMMHL 325
           +++DHLRS    I DG LP+N G G  LR + RR +   +        L G  E +  H 
Sbjct: 35  IVLDHLRSLLVAIQDGALPSNVGGGCNLRNVFRRVLSILQKNNWIHIGLDGIYEIMESHR 94

Query: 326 LPALCTEMGSAYPELIQAKLLIE-ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNG 384
           +     +   ++PE    K +++ E LR       KT D        +   L K+ IL  
Sbjct: 95  IDLQKIQGPDSFPEFKPMKQVLDIEILR------WKTTDADAKSK--LQKLLKKNPILKL 146

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS-------FNQALEEQRSRARAHSLGLG 437
           D       T G+  D +  I  A+ +   D+ S        NQ    Q+     H L   
Sbjct: 147 DDWVVASTTFGIDPDTIAQI-SAQPIPN-DLYSKISEQQELNQVKTHQKQLYDTHDLL-- 202

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
              TE+++++  E+ G  +FI  D                           + +VK I  
Sbjct: 203 --PTEQVYYT--EENGEEKFIQND---------------------------AKLVKII-- 229

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVH 556
             E VE   S  K   VFD+T FY  +GGQ  D G  + D    ++I DV+K    +F H
Sbjct: 230 --EDVENKNS--KTIFVFDKTIFYPISGGQANDIGIIVTDQNETIEIIDVKKVGPVVF-H 284

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           +A     I    +S ++ ID +NR QL  +H+  H++  A   ILG H+ Q G+  T   
Sbjct: 285 YAKNTPKI--PFISCIMKIDEENRYQLMCHHTGAHVISAACRQILGPHIWQAGAKKTAKE 342

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYND 674
              D+TH + +   E   IE   N ++  +LP+    + + +A       L   G     
Sbjct: 343 ATLDITHFRSLDPEEELEIEKLSNRLVRNSLPITKENLLKNEAENRYGFTLYQGGVVPGS 402

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VR V ++  D        C GTH+S+T  I L+ ++    +  G+ R+  + G+ A ++
Sbjct: 403 SVRCVCIQNTD-----FEACCGTHLSNTSRIGLIRLIKSKRVSDGVVRLTFVCGEAALTY 457

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
              Q + + +L +   V Q  ++   ++ ++ ++KL
Sbjct: 458 SESQQQIINNLKTSWGVDQSQILQTADKFFDGWKKL 493


>gi|167950024|ref|ZP_02537098.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
 gi|110589400|gb|ABG77209.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 167

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 89/142 (62%)

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+  ++ D +K+   +F H   +E G L     +   ++   R+  ++NHSATHLLH AL
Sbjct: 7   GVLFEVEDTRKQGGDVFGHIGKLEEGSLAVGDPVTAEVNAFTRQATALNHSATHLLHAAL 66

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS +  + LRFD +  +P++  +L+ +E  VN+ I QN  V TRIM+ E
Sbjct: 67  REVLGDHVAQKGSLVDDERLRFDFSQFEPVSREQLQRVEQRVNEQIRQNHMVETRIMSLE 126

Query: 658 DAIASGAAALLGTKYNDRVRVV 679
           DA +SGA AL G KY+++VRV+
Sbjct: 127 DARSSGAMALFGEKYDEQVRVL 148


>gi|183011986|gb|ACC37922.1| alanyl-tRNA synthetase [Themira nigricornis]
          Length = 132

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/132 (43%), Positives = 75/132 (56%), Gaps = 14/132 (10%)

Query: 46  FKNIFTGQEKPVYQA-----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100
           FK +F G   P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG 
Sbjct: 2   FKPVFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 61

Query: 101 YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKII 152
           YFK      AW+ LT+   L + RLY+T +  DE        E  ++W ++ GL  + I+
Sbjct: 62  YFKREICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTEL-GLKPEHIL 120

Query: 153 RITTNDNFWSMA 164
                DNFW M 
Sbjct: 121 PGNMKDNFWEMG 132


>gi|48477495|ref|YP_023201.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|74568036|sp|Q6L1Z4|SYA_PICTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|48430143|gb|AAT43008.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 870

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 15/224 (6%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E++ +QT FY E GGQ  D G  + +G ++++ DVQK    I VH   +  G +     +
Sbjct: 514 EIILNQTAFYPEGGGQPADHGYFLYNGKKIEVLDVQKYGNSI-VH---IINGSIPGHSRI 569

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D + R QL I+HSATHLL        G HV QN      D  R D+TH K IT  +
Sbjct: 570 KGFVDKERRTQLMIHHSATHLLLGICRAYFGEHVWQNSVKKDIDESRLDITHYKKITEDD 629

Query: 632 LKSIEDNVNDII--AQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGG 687
           +K+IE+   D I  ++N+ V     NR  AI+     L   G   +D +RVV+++  D  
Sbjct: 630 IKNIENMCLDAIMASKNIHVKNIEWNR--AISEYGFRLFEGGFPLSDTIRVVTIDDID-- 685

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              S  CGGTH+ +T +I++L IVS  +++ GI+RI    G  A
Sbjct: 686 ---SEGCGGTHLKNTKDILMLKIVSTETVQEGIQRIVFTAGPAA 726



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 96/455 (21%), Positives = 182/455 (40%), Gaps = 112/455 (24%)

Query: 3   NVSSIRTTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQ 59
           NV  +R  F++FF+ +   H+ +    ++P     ++  N+ +  F+  + +G  KP   
Sbjct: 56  NVDEMRDEFIKFFENDSLPHKFVEPYPVVPRWRDDVLLVNASIYDFQPQVTSGLAKPPGN 115

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VG+T RH T FEML + SF       Y+K+  ++ ++  L
Sbjct: 116 PIVMSQPSIRML----DIDLVGKTGRHLTSFEMLCHDSFNYDDNYIYWKDETVRYSFRFL 171

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+   +D                              + IT  +  W     G  G   E
Sbjct: 172 TERLRVDP-----------------------------LLITYKEKPWFGG--GNAGNALE 200

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFI-LPKMSIDTG 227
           +F      + G            +E+  LVFM  ++    +      R+  +P   +DTG
Sbjct: 201 VF------VMG------------LEVATLVFMDLKEDKNGDIELEGTRYSRMPLRVVDTG 242

Query: 228 MGLERMA-------TVLQE----------KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV 270
            GLER+        TV +           K +N +    + + + SE    +    + +V
Sbjct: 243 YGLERLVWLSTGTPTVYESIYKRSLDYIIKNSNAEYVSPEIMARISEIAAEIDPYSDELV 302

Query: 271 NHRV--------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
             R+                    +VDH R+   + +D ++P+N   GY+ R ++RR+  
Sbjct: 303 LSRINKTGDKKFMEMLDNIRSAYGLVDHARTLLLMFSDYVIPSNVKVGYLARMLLRRSFR 362

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
           +   + +   +   +  A+  E           K  I   ++ E E++ + L     +  
Sbjct: 363 FMEKIKFNGSI-NDIFDAVYDEFNKIIKNY--DKDFINNIIKIETEKYKEMLRSAPEI-- 417

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +  H+ K+ I N ++A K+YDT+G+PL+I+  + 
Sbjct: 418 -IRKHINKNTISNENIA-KIYDTYGIPLEIISKVF 450


>gi|149236427|ref|XP_001524091.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452467|gb|EDK46723.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 402

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 174/389 (44%), Gaps = 43/389 (11%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G  +H      G L     +V   D   R  +  NH+ TH+L++AL   LG  V Q GS 
Sbjct: 13  GYVLHTGYFVEGSLALGDEVVAAYDELRRWPIRNNHTGTHVLNYALRETLGEGVDQKGSL 72

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670
           +  + LRFD +H + +T  EL+ +E   N  I +N  V  + +   DA + +G  A+ G 
Sbjct: 73  VAQEKLRFDFSHKQALTIKELEQVEQLSNQYIKENKQVYYKDVPLADARSINGLRAVFGE 132

Query: 671 KYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            Y D VRVVS+           E E+    S   CGGTHV+ T EI  L I  ES I  G
Sbjct: 133 TYPDPVRVVSIGVPVETLLKNPENEEWRSISIEFCGGTHVARTSEIKDLVITEESGIAKG 192

Query: 720 IRRIEAITGQRARS-------------------HLMGQDEKLKSLASFLKVSQGNVV--- 757
           IRRI A+TG  A +                   +   ++ KLK     LK    +V+   
Sbjct: 193 IRRIVAVTGHDAHAVQRIAKEFDEKLNEVEKMENGPFKESKLKEFGVALKKLTISVLDKQ 252

Query: 758 ------GRVEEIWEEYRK-LQLIHAKRKLQLNVEDLSCHKIADVNFM-SHIISEVDSKEL 809
                 G++++ ++++ K +Q   +K+ L +  + L   K  + +F+ + I    ++K +
Sbjct: 253 KLTDKFGKIDKSYKDHLKAIQKEESKKTLDVVKKWLDGTKEEECDFLVARIPIGANAKAI 312

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
                 ++K+ ++  + L     ++ A    +    +    N  +LA  + K + GG  G
Sbjct: 313 TEAFTFVKKQNRAKSLYLFTGESDRVAHGCYISDAAIAKGLNGSELAAAAVKFV-GGKAG 371

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+ ++ Q  G N  + D A+  V    K+
Sbjct: 372 GKGNIVQGMGDNDKQVDAAVEEVTRLFKE 400


>gi|167388190|ref|XP_001738467.1| Alanyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165898303|gb|EDR25208.1| Alanyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 980

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 10/281 (3%)

Query: 495 IVQQGEIVEEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
           IV   E V+E   G  +   V+  +T FY   GGQ  DTG    DG+   +T V+K  + 
Sbjct: 547 IVSVLEKVDEKGKGTGIHNLVILKETAFYPIGGGQDNDTGKIKIDGVIYDVTYVEKVGKC 606

Query: 553 IFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           I  H     +     +  +V+  +D Q R QL  +H+ATH++H A   +LG HV QNG+ 
Sbjct: 607 ILHHINSDLKNWEELKGKMVIGYVDDQRRNQLRAHHTATHIIHQAAHQVLGPHVWQNGAK 666

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            T +    D+TH   IT  E  +IE   N++I ++L +   ++++E+A      +L   G
Sbjct: 667 KTVEEAHLDITHFSSITREEENAIEKLANEMIRKSLKINKFVLSKEEAEKRYGFSLYQGG 726

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + VR+V +     G  + A C GTH  +T ++ L+ I+  + I  G+ RI  + G 
Sbjct: 727 VVAGNEVRIVDI----SGYDTEACC-GTHCDNTSQVGLIRIIKTNRISDGVVRIRFVAGD 781

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            A  ++  +   +  L     V    +   +E I+ +Y+KL
Sbjct: 782 AAYKNMAMEKNLINDLCDSYSVLPEVLQPTLERIFTDYKKL 822



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 122/336 (36%), Gaps = 106/336 (31%)

Query: 38  FTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           F  +G+  F+    TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G  
Sbjct: 127 FVAAGIYCFQPYCVTGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQ 182

Query: 97  SFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
            F       YFKE  +      LTKE +++                             +
Sbjct: 183 VFNSPQKYVYFKEECVDYNLRWLTKELEIE-----------------------------L 213

Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
             IT  ++ W     G  GP  E+F                   + +E+ N+VF Q++  
Sbjct: 214 DDITLIEDVWCGG--GNLGPSIEMFV------------------KGLEVGNMVFTQYKIL 253

Query: 212 N--KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI 269
           +  K E   L    ID G+GLER+  ++     +Y ++ F   ++  +   G+  E + I
Sbjct: 254 DFVKGEFEPLKHQVIDVGIGLERIPWLINGTPTSY-LEAFPGAVKYLQSKLGVTLESDVI 312

Query: 270 ------------------------------VNHR--------------VIVDHLRSSSFL 285
                                         V +R              +I DH R+    
Sbjct: 313 SKFAPYCCLLNLDECKDVNKAWADIAKECGVENREVLQKAIQPARDLYIIADHSRTMLIA 372

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           I DG LP+  G G  LR I+RR        G+ E L
Sbjct: 373 IYDGALPSAVGGGANLRNIVRRMFSILARNGWWEKL 408


>gi|297519749|ref|ZP_06938135.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 214

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 118/197 (59%), Gaps = 7/197 (3%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  L
Sbjct: 1   STELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLL 60

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---V 804
           K    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++S+   V
Sbjct: 61  KGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGV 120

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L  + A+ + 
Sbjct: 121 EPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV- 178

Query: 865 GGGGGGRPHMAQSGGPN 881
           GG GGGRP MAQ+GG +
Sbjct: 179 GGKGGGRPDMAQAGGTD 195


>gi|67479233|ref|XP_654998.1| alanyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56472100|gb|EAL49612.1| alanyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 980

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 12/282 (4%)

Query: 495 IVQQGEIVEEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
           IV   E V+E   G  V   V+  ++ FY   GGQ  DTG    DG+   +T V+K  + 
Sbjct: 547 IVSILEKVDEKGKGTGVHNLVILKESAFYPIGGGQDNDTGKIKIDGVIYDVTYVEKVGKC 606

Query: 553 IFVHHAIVERGILRTEMSLVLT--IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           I +HH   +          V+T  +D Q R QL  +H+ATH++H A   +LG HV QNG+
Sbjct: 607 I-LHHINSDLKNWNELKGQVVTGYVDDQRRNQLRAHHTATHIIHQAAHQVLGPHVWQNGA 665

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
             T +    D+TH   IT  E  +IE   N++I ++L +   ++++E+A      +L   
Sbjct: 666 KKTVEEAHLDITHFSSITREEENAIEKLANEMIRKSLKINKFVLSKEEAEKRYGFSLYQG 725

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G    + VR+V +     G  + A C GTH  +T ++ L+ I+  + I  G+ RI  + G
Sbjct: 726 GVVAGNEVRIVDI----SGYDTEACC-GTHCDNTSQVGLIRIIKTNRISDGVVRIRFVAG 780

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             A  ++  +   +  L     V    +   +E I+ +Y+KL
Sbjct: 781 DAAYKNMAMEKNLINDLCDSYSVLPEVLQPTLERIFTDYKKL 822



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 122/336 (36%), Gaps = 106/336 (31%)

Query: 38  FTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           F  +G+  F+    TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G  
Sbjct: 127 FVAAGIYCFQPYCVTGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQ 182

Query: 97  SFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
            F       YFKE  +      LTKE +++                             +
Sbjct: 183 VFNSPQKYVYFKEECVDYNLRWLTKELEIE-----------------------------L 213

Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
             IT  ++ W     G  GP  E+F                   + +E+ N+VF Q++  
Sbjct: 214 DDITLIEDVWCGG--GNLGPSIEMFV------------------KGLEVGNMVFTQYKIL 253

Query: 212 N--KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI 269
           +  K E   L    ID G+GLER+  ++     +Y ++ F   ++  +   G+  E + I
Sbjct: 254 DFVKGEFEPLKHQVIDVGIGLERIPWLINGTPTSY-LEAFPGAVKYLQSKLGVTLESDVI 312

Query: 270 ------------------------------VNHR--------------VIVDHLRSSSFL 285
                                         V +R              +I DH R+    
Sbjct: 313 SKFAPYCCLLNLDECKDVNKAWADIAKECGVENREVLQKAIQPARDLYIIADHSRTMLIA 372

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           I DG LP+  G G  LR I+RR        G+ E L
Sbjct: 373 IYDGALPSAVGGGANLRNIVRRMFSILAKNGWWEKL 408


>gi|259015955|gb|ACV89260.1| alanyl-tRNA synthetase [Muscidifurax raptorellus]
          Length = 133

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 16/136 (11%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--DE------DEEAF 137
           HHTFFEM+GN+SFG YFK+     AW+ LT++ +L   RLY+T +  DE      DEE  
Sbjct: 2   HHTFFEMMGNWSFGDYFKKEICGWAWEFLTEKLNLPADRLYVTYFGGDEKSNLKPDEECK 61

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEG 194
           K W  + G+    ++  +  DNFW M ETGPCGP SE+ +D+     GG   +   + + 
Sbjct: 62  KFWLSL-GVPESHVLPGSMKDNFWEMGETGPCGPXSELHYDR----IGGREAAHLVNMDD 116

Query: 195 ERYIEIWNLVFMQFEQ 210
              +EIWNLVF+Q+ +
Sbjct: 117 PDVLEIWNLVFIQYNR 132


>gi|299561742|gb|ADJ36943.1| alanyl-tRNA synthetase [Drosophila sp. JFG-2010]
          Length = 137

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 14/141 (9%)

Query: 91  EMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKK 142
           EMLGN+SFG YFK      AW  LT+   L + RLY+T +  DE        E  ++W  
Sbjct: 1   EMLGNWSFGDYFKXEICSWAWQFLTERLRLPKDRLYVTYFGGDEASGLQPDLECKQMWLD 60

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEI 200
           + GL+ + I+  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +EI
Sbjct: 61  L-GLTPEHILPGSMKDNFWEMGETGPCGPCSELHFDRVGGRSVPELV---NMDDPDVLEI 116

Query: 201 WNLVFMQFEQQNKQERFILPK 221
           WNLVF+QF +++      LPK
Sbjct: 117 WNLVFIQFNRESDGSLRPLPK 137


>gi|167950026|ref|ZP_02537100.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 139

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 87/121 (71%), Gaps = 1/121 (0%)

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FL+ DG++P+NEGRG+VLRRI+RRA+ +  +LG        L+  LC E
Sbjct: 13  RVIADHIRSCAFLVVDGVIPSNEGRGFVLRRIIRRAIRHGYMLGQKGAFFYRLVGPLCDE 72

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG++YPEL+ A+ L+E  L+ E+ERF +TL++G+ +L+ V++ L   +I  G   FKLYD
Sbjct: 73  MGASYPELLSARALVERVLKQEEERFAETLEQGMRILEEVIAGLEGKQI-PGATVFKLYD 131

Query: 393 T 393
           T
Sbjct: 132 T 132


>gi|167950028|ref|ZP_02537102.1| Phosphoserine aminotransferase, Methanosarcina type [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 91

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 56/74 (75%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           MV FK+ F G++K  Y    + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MVQFKDAFLGRDKRSYLRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTK 116
           K  AI  AW+ LT+
Sbjct: 61  KREAINYAWEFLTR 74


>gi|241709472|ref|XP_002403411.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215505071|gb|EEC14565.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 587

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 15/204 (7%)

Query: 167 GPCGPCSEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           GPCGP +EI  D  E      P  L  ++  G+  +E+WNLVF+QF +        LP  
Sbjct: 2   GPCGPSTEIHIDLAEGGGPLKPATLRVNAGSGD-LVELWNLVFIQFNRDAGGNLSSLPNK 60

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG------NNIVNHRVI 275
            +DTGMGLER+  VLQ   +NYD DLF  L+ A ++   +  Y G      +  V +R++
Sbjct: 61  HVDTGMGLERLTAVLQNVKSNYDTDLFSPLLSALQKSARVAPYRGLVGPDASVDVAYRIV 120

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
           VDH R  +  I+DG+LP +   G  LRR++R+A   A + L   + ++  L  ++ T +G
Sbjct: 121 VDHARMFTVAISDGVLPEHFDAGNKLRRVIRKASHAAIKHLKCDQGVLASLADSVYTVLG 180

Query: 335 SAYPELIQAKLLIEETLRSEDERF 358
             YP L     L++  +  E++R+
Sbjct: 181 EFYPNLDLE--LVKNIVNLEEDRY 202



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH L+ AL  +LGS   Q  S +    LRFD    K +T+ +++ ++D  N +I +N 
Sbjct: 223 SATHCLNMALRAVLGS-TEQRSSLVDSRHLRFDFLSKKGLTTDQVQRVQDCCNAMIRENH 281

Query: 648 PVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            V   I+ + +A+       +   +Y   V V+++   D  V S  LC GTHVSS  ++ 
Sbjct: 282 DVQRVILPKSEALELPQLVTVANEEYPTSVSVITIGKNDNIV-SRELCCGTHVSSLSDLG 340

Query: 707 LLYIVSESSIRAGIRRIEAITGQRA 731
              + S  S+ + +R + A+ G  A
Sbjct: 341 EFVLTSHRSVGSMVRSVCAVAGPLA 365


>gi|317497359|ref|ZP_07955682.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895428|gb|EFV17587.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 102

 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 65/95 (68%), Gaps = 4/95 (4%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
          V+ +R  +LEFF+  GH  L S SL+P ND +L+  N+GM P K  FTGQE P    VTT
Sbjct: 6  VNELRKMYLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTT 65

Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF 98
           QKC+R G    D++NVG+T RH TFFEMLGNFSF
Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSF 96


>gi|299561738|gb|ADJ36941.1| alanyl-tRNA synthetase [Stylogaster neglecta]
          Length = 136

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/140 (41%), Positives = 79/140 (56%), Gaps = 14/140 (10%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           MLGN+SFG YFK      AW+ LTK   L + RLY+T +  DE        E  ++W  +
Sbjct: 1   MLGNWSFGDYFKTEICHWAWEFLTKRLMLPKDRLYVTYFGGDEKGGLLPDLECKQIWLDM 60

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIW 201
            G+ A+ II     DNFW M ETGPCGPCSEI +D+     +P  +   +++    +EIW
Sbjct: 61  -GIKAEHIIPGNMKDNFWEMGETGPCGPCSEIHYDRIGDRSVPELV---NQDDPDVLEIW 116

Query: 202 NLVFMQFEQQNKQERFILPK 221
           NLVF+QF ++       LPK
Sbjct: 117 NLVFIQFNREQDGSLKPLPK 136


>gi|291533809|emb|CBL06922.1| Alanyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 244

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 12/235 (5%)

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA AL G KY D VRVV+V        S  LCGG+HV + G+I +  I+ ES + AG+R
Sbjct: 5   AGAMALFGEKYGDIVRVVTVPG-----FSMELCGGSHVKNIGQIGMFKIIGESGVAAGVR 59

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEAITG+ A  ++  + + L++  + LK ++ N+  ++  + +E ++++   AK + + 
Sbjct: 60  RIEAITGKAAIDYMNAKAKLLQTAITTLKTNESNLCDKIANLLQENKEMKAEIAKVQAER 119

Query: 782 NVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
              D     ++  +   VN +   I   +  EL++  D L  K     ++++G     K 
Sbjct: 120 AKADSNKLLMALKEYNGVNVIVGKIQATNMDELRNNADLLCNKFDKAGVVVLGAILNDKV 179

Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + ++ V +D + R  +A  + +  A V  GG GGGRP MAQ+GG    K + A A
Sbjct: 180 NFVVKVNKDGVARGLHAGKIVKEVAMVT-GGNGGGRPDMAQAGGKQPEKLNDAFA 233


>gi|330947236|gb|EGH47963.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 146

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 1/112 (0%)

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+
Sbjct: 1   SNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLK 60

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI
Sbjct: 61  GEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDI 111


>gi|290559656|gb|EFD92983.1| Alanine--tRNA ligase [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 675

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 172/691 (24%), Positives = 279/691 (40%), Gaps = 167/691 (24%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPF-KNIFTGQEKPVYQAVTTVQ 65
           I   F +FF K  H  +    ++      + F  + +  F   +  G  +P    +   Q
Sbjct: 79  IWKLFSQFFSKKKHTEIKRYPVVARWRDDIYFVEAAIDDFAPYVIKGTAEPPANPLVVPQ 138

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDL 120
            C R     ND++NVG T RH T F M    +F       YF E AI             
Sbjct: 139 ICFR----FNDINNVGLTGRHLTSFVMAEEAAFNTKEKKTYFDEEAI------------- 181

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               +YIT +            + GL   K   +T  ++ W+ A  G  G C E F    
Sbjct: 182 ----IYITEW-----------LLKGLKIKKE-ELTFIEDAWAGA--GYAGSCLEYF---- 219

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE-QQNKQERFILPKMSIDTGMGLERMATV--- 236
               GGL           E+ N V+M++    +K E   LP  +ID G GLER + V   
Sbjct: 220 ---AGGL-----------ELGNQVYMRYIIGSDKLED--LPTKTIDMGAGLERWSWVSSS 263

Query: 237 ---------------LQEKTN-NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRV--- 274
                          ++ K N NY     K + Q   +    K E N    I+ ++    
Sbjct: 264 TPTIYEATFPKVINFIKNKANVNYSDKDIKEVYQYLGKFDFEKTEFNEALEIIANKTKFN 323

Query: 275 ----------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                           I DH R+    I DG LP+N G GY LR I+RR++ +     + 
Sbjct: 324 TAEIKKMVSDMRAVYSIADHTRTLLIAIHDGSLPSNVGGGYNLRNILRRSLNFIDSKNWK 383

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
             +   ++     E+ + YPEL+Q +    E +  E ER+ ++  R   ++     ++ K
Sbjct: 384 IDI-NDVINEHKKELKTLYPELMQTECT--EVINKEIERYKESKSRNAKIIS---EYVKK 437

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
            +I N ++  KLY++ G+ +D +QD   A   AG +II   +      +R +   +    
Sbjct: 438 GKIDNNEM-LKLYESEGVTIDDLQD---AAERAGKNII-IPENFYSNINRTKTSEIKKQD 492

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
                                 DL++G   +K+  K+   +   +LT   + I+K I   
Sbjct: 493 T---------------------DLIKG---IKKTEKLFYDE---ELTESRAKIIKIIKPN 525

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
                         V+ D+T FY E GGQ  D G    +    ++TDV K  E + +H+ 
Sbjct: 526 M-------------VILDKTIFYPEMGGQKADNGFIEKN----RVTDV-KVLEDVIIHYL 567

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
               GI +   ++ + +D + R  L  +H+ATH+++ A   ILG  V QN   I    L 
Sbjct: 568 DNIDGI-KEGQNVDIKVDSERRELLRRHHTATHIINQASRRILGQFVYQN---INEKKLL 623

Query: 619 --FDVTHS-KPITSAELKSI-EDNVNDIIAQ 645
             +D  +S   I S+EL ++ +DN+  I+++
Sbjct: 624 AVYDSANSLTKINSSELTNVSDDNIKLILSE 654


>gi|242399787|ref|YP_002995212.1| Alanyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242266181|gb|ACS90863.1| Alanyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 911

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/477 (21%), Positives = 201/477 (42%), Gaps = 127/477 (26%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
            +  +R  FL +F++  H  +    ++P     ++   + ++ F+  + +G+  P    +
Sbjct: 60  TLEEMREAFLSYFERKNHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN--FSFGG---YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ +  F++ G   Y+ +  ++ A++  TK
Sbjct: 120 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVEYAYEFFTK 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +                           G+  + I   T  +N W  A  G  GP  E+ 
Sbjct: 176 DL--------------------------GMKGEDI---TFKENPW--AGGGNAGPAFEVL 204

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE-----------QQNKQERFI-LPKMSI 224
           +                  R +E+  LVFMQ++            + K ++++ +    +
Sbjct: 205 Y------------------RGLEVATLVFMQYKLAPPDADPSQIVEIKGDKYVPMDTRVV 246

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV-------- 274
           DTG GLER+  + Q     YD  +  ++++  +++ G+    + I+  N R+        
Sbjct: 247 DTGYGLERLVWMSQGTPTAYDA-VLGYVVKPLKRMAGIDKIDDRILMENSRLAGMFDIED 305

Query: 275 ----------------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH ++ +F++ADG++P+N   GY+
Sbjct: 306 MGDLRVLRETVAKNVDMAPDELTRLVRPYELIYAIADHTKALTFMLADGVVPSNAKAGYL 365

Query: 301 LRRIMRRAMCYARLLGYTEPL----MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
            R ++R+++ + R LG   PL     MH+      E+   +PE  + + ++ + +  E+ 
Sbjct: 366 ARLLIRKSIRHLRELGLQIPLSEIVAMHI-----KELHKTFPEFKEMEDVVIDMVNVEER 420

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++  TLDRG  L+   +  L K  +  L  +     Y++HGL  +I+++I    G+ 
Sbjct: 421 KYADTLDRGNDLVRREIERLKKQGVGELPLERLMLFYESHGLTPEIVKEIAEKEGMT 477



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 173/363 (47%), Gaps = 38/363 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-----IVERGILRT 567
           VV D T FY E GGQ     C +G+   +++ DVQK  + I +H         ERGI+  
Sbjct: 541 VVLDATAFYPEGGGQ----PCDLGELNGVEVLDVQKVGK-IILHKVKEPEKFKERGIVHG 595

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +      I+++ R Q   +H+ TH+L  AL  +LG HV Q GS ++ D  R D+ H K +
Sbjct: 596 K------INWERRIQHMRHHTGTHVLMGALVRVLGKHVWQAGSQLSTDWARLDIAHYKRV 649

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYED 685
           +  ELK IE   N I+ ++  V    + R +A       L   G      +RV+++  +D
Sbjct: 650 SEEELKEIELLANRIVMEDREVKWEWLPRTEAEQRYGFRLYQGGVVPGRVIRVLNI--KD 707

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
             V +   CGGTH+  TG I  + I+    I+ G+ RI    G+ A      + E +   
Sbjct: 708 WDVQA---CGGTHLPRTGLIGPIKILRTERIQDGVERIIFACGEAAIKEWQKEREIISKT 764

Query: 746 ASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHI 800
           +   +V    +    GR  E W++ RK      K   +L V +L     KI ++ F+  +
Sbjct: 765 SEVFRVPLEKLPETAGRFFEEWKQARKEVEKLNKELAKLLVYELENRVEKIGEIEFIGAV 824

Query: 801 IS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           +  E+D   L+    AL+ K  + I+ L+    E+  +V++ V EDL   + A DL R+ 
Sbjct: 825 VEGEIDH--LREA--ALKLKKSNRIVALIS---EESNAVVVTVGEDL--NYKAGDLIRII 875

Query: 860 AKV 862
            +V
Sbjct: 876 TRV 878


>gi|320101298|ref|YP_004176890.1| alanyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319753650|gb|ADV65408.1| alanyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 908

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 183/381 (48%), Gaps = 41/381 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T  Y  AGGQ  DTG     G R  +  V K    + +H  +++  +   E ++V
Sbjct: 528 LVLDRTVMYPWAGGQDHDTGFIEVAGRRYAVEYVGKVG-NVIIH--VLKEPVEIAEGTVV 584

Query: 573 -LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            ++ID+  R +L  +H+ATH++  A   +LG HV Q G+  T +  R D+TH K +T  E
Sbjct: 585 NVSIDWYRRYRLMKHHTATHVVLAAARRVLGDHVWQAGAEKTVEKARLDITHHKSLTPEE 644

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVH 689
           L+ IED  N +I   + +    M + +A +     +   G  Y+  +R+V +   D    
Sbjct: 645 LRRIEDLANKLIEDRINLRFHEMGKFEAESKYGLRIYQGGAVYSPILRIVEIPGWD---- 700

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +  C GTHV +T EI  + IV+   I+ G+ R+E I   R   H+   + ++    + +
Sbjct: 701 -AQACFGTHVHNTSEIGGVKIVNAERIQDGVVRLEFIASTRLVDHIRSLEGEIDEALAVM 759

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA--------DVNFMSHII 801
              QG++   V ++  E+ ++  +  + + +L  + L    +A        DV ++   +
Sbjct: 760 GARQGDLASAVRKMSREHAEVSKLLEEYRARL-ADTLVSQGVAGKTSICGVDVTYVELPV 818

Query: 802 SEVDSKELKSVMDALQKK------IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
              D K L+ V++ L  K      I +G  + + +  EK +   I    DL  R  A   
Sbjct: 819 R--DEKLLRQVLEELSLKQGILTVIDAGETLEIAVKPEKASEKNI----DL--RKTA--- 867

Query: 856 ARLSAKVLGGGGGGGRP-HMA 875
           ARLSAK   G  GGG+P H+A
Sbjct: 868 ARLSAK---GAKGGGKPDHVA 885



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 93/453 (20%), Positives = 174/453 (38%), Gaps = 111/453 (24%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F +  GH ++    ++      L  T + ++ F+   T G   P Y  +
Sbjct: 59  SLQEVREKFIGFLRSKGHGVVDPYPVLARWRNDLYLTIASIIVFQPAVTEGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R     +D+DNVG T  RH T FEM G  +F       Y+ E  +    +   
Sbjct: 119 VIIQPSIRL----SDIDNVGLTFGRHLTSFEMGGMHAFNKPGRFIYWVEGILDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D           D+  FK                   + +W     G  GP  E+
Sbjct: 175 KEIGIDL----------DDLVFK-------------------EGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL-PKMSIDTGMGLERMA 234
             D                   +E+  LV M ++  +   +++  P + +D G G+ER+A
Sbjct: 204 LVDG------------------MELATLVHMMYKVVDG--KYVENPVLVVDCGYGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRV-------------------- 274
              Q+    +   ++  LI   + V G++    +++   V                    
Sbjct: 244 WFTQKTPTGFHA-IYGRLINEYKDVLGVEEPPYDVLKKAVYMLSDREIEGIREYERALRE 302

Query: 275 ------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                             ++DH R+ S +++DG++P+N G GY+ R ++RR +     LG
Sbjct: 303 HGFGDHIDEFVKVIYLYSVLDHARTMSLMLSDGVVPSNTGEGYLARLVIRRLLRNLVRLG 362

Query: 317 YTEPLMMHLLPALCTEMGSAYP-ELIQAKL-----LIEETLRSEDERFGKTLDRGLVLLD 370
                +  ++  L       +  + I  K       I +    E  +F   + RG+ ++D
Sbjct: 363 VEPARLTDVVQELLDRQIKYWKNDYIYGKFEAHRDYIMDVAAVETAKFIDAVSRGIDIVD 422

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
            +L    K + L  D    +YD+HG+P + + +
Sbjct: 423 KLLK---KRKSLGLDDLITIYDSHGIPPEFVAE 452


>gi|297527343|ref|YP_003669367.1| alanyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256259|gb|ADI32468.1| alanyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 909

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 9/263 (3%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+FDQT FY  AGGQ  D G  I     + +  V K  E I   H +  R  +     + 
Sbjct: 528 VIFDQTIFYPRAGGQDHDKGYIILGDEHIPVKHVYKVGEVIV--HQLATRRKIEPGTRVE 585

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID+ NR +L  +H+ATH++  A   +LG HV Q G+  T +  R D+TH K +++ E+
Sbjct: 586 LVIDWYNRYRLMRHHTATHIVLGAARKVLGEHVWQAGAEKTTEKARLDITHYKSLSNEEI 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           + IE+  N +I + + +    + + +A       +   G  Y+  +R+V +   D     
Sbjct: 646 RKIEELANKVIDEKIDLRFYFLPKFEAEKKFGLKIYQGGAVYSPILRIVEIPGWD----- 700

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +  C GTHV +T E+  + I+    I+ G+ R+E I   R   ++    +++     FL 
Sbjct: 701 AEACFGTHVYNTSEVGGIKIIKSEKIQDGVIRLEYIASTRLPEYISDLQKEVDKALEFLG 760

Query: 751 VSQGNVVGRVEEIWEEYRKLQLI 773
           V   ++    +++ EE  K +++
Sbjct: 761 VKGSSISIAAKKVSEELDKYKVL 783



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 106/447 (23%), Positives = 182/447 (40%), Gaps = 109/447 (24%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQK 66
           R  F+EFF  +GHE +    ++      L  T + ++ F+   T G   P Y  +  VQ 
Sbjct: 64  RRKFIEFFTSHGHEYVEPYPVLARWRNDLYLTIASIIVFQPAVTEGIIDPPYNPLVIVQP 123

Query: 67  CVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDL 120
            VR      D+DNVG T  RH T FEM G+ +F       Y+    +Q A+D  TK   +
Sbjct: 124 SVRL----EDIDNVGLTFGRHLTSFEMGGHHAFNKKNQYVYWVNETLQYAFDFFTKTLGI 179

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +   L           FK                   +++W     G  GP  E+  D  
Sbjct: 180 EPENL----------VFK-------------------ESWWEGG--GNAGPAYEVLVD-- 206

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                GL           E+  LVFM+++  N  E+   P + +DTG G+ER+A   Q  
Sbjct: 207 -----GL-----------ELATLVFMKYKIVN-GEKVKNPVLVVDTGYGIERIAWFTQRT 249

Query: 241 TNNYDIDLFKHLIQASEQVTGMK----------------------YEGNNI--------- 269
              +   +F  L++  + + G+                       Y  NN          
Sbjct: 250 PTAFHT-IFGSLLETYKNILGIDEPPYDVLKKIVYLLSDKEIEDIYMLNNYLEEINYSEY 308

Query: 270 -------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT---- 318
                  +N    +DH+++ S +++DGI+P+N G GY+ R ++RR +     LG      
Sbjct: 309 YKSLVDAINLYTALDHVKTLSLMLSDGIVPSNSGEGYLARLVIRRLLRTLIRLGIKVSAL 368

Query: 319 EPLMMHLL--PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
           E +++ L+   A   +    Y +  +    I + +  E  ++   + RG+  +D  +   
Sbjct: 369 EDVVLELIDKQAKYWKGKYVYDKFHRRLDYILDVMSYETRKYVDIITRGIREIDRFIKK- 427

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQD 403
            K  +LN  +  ++YD+ G+P +I+ +
Sbjct: 428 KKKLVLNDLI--QIYDSKGIPPEIVAE 452


>gi|222875352|gb|EEF12483.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 13/248 (5%)

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A A+GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +V E
Sbjct: 1   MDIESAKATGAMMLFGEKYGDSVRVLDIG------SSRELCGGTHVQRTGDIGLFKVVGE 54

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
             + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    E+ R L  +
Sbjct: 55  GGVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKE 114

Query: 772 LIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   K KL  +  D    +  DV     ++  +   D+K L+  MD L+ K+ +  I+L 
Sbjct: 115 VAALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLA 174

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  +   VT+    R  A DL    A  + GG GGG+P MA +GG + +    A
Sbjct: 175 AVDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAA 232

Query: 889 IAGVASFL 896
           +AGV +++
Sbjct: 233 LAGVHAWV 240


>gi|118576438|ref|YP_876181.1| alanyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|205830019|sp|A0RX10|SYA_CENSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118194959|gb|ABK77877.1| alanyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 894

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 26/230 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FYA  GGQ  D G   G     ++TDV K   GI +H   ++ G L    ++ 
Sbjct: 520 VVLDRTSFYARGGGQEPDHGTIGG----FRVTDVSKHG-GIILHR--LDGGSLAEGSTVR 572

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D + R  ++ NH++TH+L+ +   +LGS V Q+ +    D  R D+TH  P+++AE+
Sbjct: 573 CIRDEKRRAGITRNHTSTHILNASARGVLGSWVWQHSAFKEEDHARLDITHHSPLSAAEV 632

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDA-------IASGAAALLGTKYNDRVRVVSVE-YE 684
           K IE   N I+ ++  V      R +A       I  G    + T     VR+V+++ Y+
Sbjct: 633 KKIEAAANGIVKEDRGVSIGYHPRGEAEQKYGFRIYQGGVVPVST-----VRIVTIKGYD 687

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           D        CGGTHV STGE+ L+ I     I+ G+ R+E ++G  A  H
Sbjct: 688 D------EACGGTHVKSTGEVGLIRITRTKRIQDGVVRLEFVSGDAAIEH 731



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 154/406 (37%), Gaps = 111/406 (27%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAVTTVQK 66
           T  E+F KNGHE +P   ++      L FT + +V F+ +       E P    +   Q 
Sbjct: 77  TIEEYFVKNGHESVPRYPVVCRWRDDLYFTIASIVDFQRVMGSSVVFEFPA-NPLVVPQT 135

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF---GGYFKERAIQLAWDLLTKEFDLDQR 123
           C+R      DL+NVG T RH + F M+G  +    GGY+K+  I L + LL ++  + + 
Sbjct: 136 CLR----FKDLENVGVTGRHFSSFCMIGQHAVPGNGGYWKDECIDLDYGLLVRQLGIPKE 191

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            +   V+ ED     +W                       A  G  GP  E +       
Sbjct: 192 EV---VFVED-----VW-----------------------AGGGSFGPSLEYYV------ 214

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                       R +E+ N VF +F Q        L +  ID G GLER A +       
Sbjct: 215 ------------RGLELGNAVFTEF-QGELGNHTTLDRRIIDMGAGLERFAWITTGTPTA 261

Query: 244 YDIDLFKHLIQASEQVTG-------MKYEGNNIVN------------------------- 271
           YD      + + +E +           Y     VN                         
Sbjct: 262 YDCCFGPVMGRLAESLGADQDSAELAAYYTRVAVNLGRCGDLNEARRRSAQEAGISDSRM 321

Query: 272 ---------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR-AMCYARL---LGYT 318
                      ++ DH+R+  F I+DG LP+N G GY LR ++RR A    R    L   
Sbjct: 322 AGAIAPLGEAYMVADHIRTLIFAISDGALPSNVGGGYNLRMMLRRVAGAMERTFPGLDLD 381

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           E + +H+   + T     YPEL  A+  ++  L  E  R+G + +R
Sbjct: 382 ELVDLHIDYLMGT-----YPELDGARQDVKTILDIEASRYGDSKER 422


>gi|126465992|ref|YP_001041101.1| alanyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|205830219|sp|A3DNI3|SYA_STAMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126014815|gb|ABN70193.1| alanyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 909

 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 175/374 (46%), Gaps = 34/374 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+FDQT FY  AGGQ  D G  I     + +  V K  E I    A   R +  T++ LV
Sbjct: 528 VIFDQTIFYPRAGGQDHDKGYVILGNEHIPVKHVYKVGEVIVHQLATKRRLVPGTQVELV 587

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+ NR +L  +H+ATH++  A   +LG HV Q G+  T +  R D+TH K ++  E+
Sbjct: 588 --IDWYNRYRLMRHHTATHIVLGAARKVLGEHVWQAGAEKTVEKARLDITHYKSLSDEEI 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
           + IE+  N +I + + +    + + +A       +   G  Y+  +R+V +   D     
Sbjct: 646 RKIEELANKVIDERIDLKFYFLPKFEAEKRFGLRIYQGGAVYSPILRIVEIPGWD----- 700

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL- 749
           +  C GTHV +T EI  + I+    I+ G+ R+E I   R   ++    +++     FL 
Sbjct: 701 AEACFGTHVYNTSEIGGIKIIKAEKIQDGVIRLEYIASTRLPEYISDLQKEVDKALKFLG 760

Query: 750 --KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
              +    V  +V E  ++Y+ L LI  +R  +   E L  H + +   +  + + V  K
Sbjct: 761 AKGLPISIVAKKVSEELDKYKTL-LIQYRRLFK---EILLKHLLEEALEICGLKTVVIEK 816

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL------DRFN--AVDLARLS 859
           +L+   + L K I   + +       KK  + I V++  +      D  N   +DL +L 
Sbjct: 817 QLED--EQLYKSIIEDLSL-------KKRVLTIYVSDKFVEIAIHPDEANNRKLDLRKLV 867

Query: 860 AKVLG-GGGGGGRP 872
             +   GG GGG+P
Sbjct: 868 EILQNMGGRGGGKP 881



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 133/342 (38%), Gaps = 100/342 (29%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQK 66
           R  F+EFF  +GH  +    ++      L  T + ++ F+   T G   P Y  +  VQ 
Sbjct: 64  RRKFIEFFTSHGHGYVDPYPVLARWRNDLYLTIASIIVFQPAVTEGIVDPPYNPLVIVQP 123

Query: 67  CVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDL 120
            VR      D+DNVG T  RH T FEM G+ +F       Y+    +Q A+D  TK    
Sbjct: 124 SVRL----EDIDNVGLTFGRHLTSFEMGGHHAFNKKDQYVYWVNETLQYAFDFFTK---- 175

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
                                 I G+  + I+     +++W     G  GP  E+  D  
Sbjct: 176 ----------------------IIGIEPENIV---FKESWWEGG--GNAGPAYEVLVD-- 206

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                GL           E+  LVFM+++  N + +   P + +DTG G+ER+A   Q  
Sbjct: 207 -----GL-----------ELATLVFMKYKIVNGK-KVRNPVLVVDTGYGIERIAWFTQRT 249

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI------------------------------- 269
              +   +F  L++  + + G+     ++                               
Sbjct: 250 PTAFHT-IFSSLLETYKNILGIDEPPYDVLKKIVYLLSDKEIEDVYMLNKYLEEIDYSEY 308

Query: 270 -------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
                  +N    +DH+++ S +++DGI+ +N G GY+ R +
Sbjct: 309 YKSLVDTINLYTALDHVKTLSLMLSDGIVSSNTGEGYLARLV 350


>gi|299561758|gb|ADJ36951.1| alanyl-tRNA synthetase [Conicera dauci]
          Length = 122

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 74/126 (58%), Gaps = 14/126 (11%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLW 140
           FFEMLGN+SFG YFK+  I  AW+ LT   +L + RLY+T +        + D E  + W
Sbjct: 1   FFEMLGNWSFGDYFKKEIISWAWEFLTDRLELPKDRLYVTYFGGHPESGLEPDLECRQFW 60

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYI 198
             + GL  + II  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   + +    +
Sbjct: 61  IDM-GLKEEHIIPGSMKDNFWEMGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVL 116

Query: 199 EIWNLV 204
           EIWNLV
Sbjct: 117 EIWNLV 122


>gi|118374997|ref|XP_001020686.1| alanyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89302453|gb|EAS00441.1| alanyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 1049

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 133/285 (46%), Gaps = 20/285 (7%)

Query: 498 QGEIVEEAVSGQKVE----VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           + +IVE     + VE    V+ DQ+ FY  +GGQ  D G    DG +  + DV K  + +
Sbjct: 631 EAKIVEIFADYKNVENRNIVILDQSCFYPTSGGQQNDIGVMTVDGQKYNVVDVIKVGKCV 690

Query: 554 FVHHAIVERGILRTEMSLVL------TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
                I++R +   + S  +       +D   R+ L  +H++TH++  A   +LG HV Q
Sbjct: 691 L---HILDRSLPNPDNSHYIGQKVHAVVDENRRKILRNHHTSTHIVFAACRQVLGPHVWQ 747

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
           NG+  T D    D+TH   +T  +   IE   N I+  +  +    +N+ +A       L
Sbjct: 748 NGAKKTVDMAHLDITHYASLTEEQEMEIEKIANTIVFSSKNINKEFVNKAEAEKEHGFRL 807

Query: 668 L--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              G    D +RVV++E    G    A C GTH  +T E+ ++ I+  + I  GI R+  
Sbjct: 808 YQGGVVPGDTLRVVNIE----GTDVEACC-GTHCDNTSEVGIIRILKTNRISDGIIRLYF 862

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + G+R+   L  Q + L  L +  KV + ++V    + + E  K 
Sbjct: 863 VAGERSLQKLSTQTKVLVDLQNIFKVKESDLVSTSLKFFTERNKF 907



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 130/335 (38%), Gaps = 105/335 (31%)

Query: 38  FTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG-- 94
           F  +G+  F+    TG+ +P    +   Q CVR     NDLDN+G T RH++ F M+G  
Sbjct: 211 FVAAGIYCFQPYCMTGELQPPANPLIQPQFCVR----FNDLDNIGLTGRHYSGFIMIGIQ 266

Query: 95  NFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           +F + G     +F E  +         EF+L+                  W  I GL   
Sbjct: 267 SFCYPGTEDKTFFSEECV---------EFNLN------------------W-LIDGLKIP 298

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
           K   IT  ++ WS    G  G C E F      + G            +E+ N+VF  ++
Sbjct: 299 K-DEITLIEDIWSGG--GNLGSCVEYF------VKG------------LEVGNMVFTMYK 337

Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF----KHL------------- 252
                +   L    ID G+G+ER+  ++     +Y +D+F    K+L             
Sbjct: 338 YYPDGKLEDLEIKVIDVGIGMERIPWLINGTPTSY-MDVFDTSYKYLQEKLQVETSTEIW 396

Query: 253 ---------IQASEQ-----------------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
                    + A E                  V   K     + +  +++DH R++  LI
Sbjct: 397 KQIGPYTCHLNADESDDMEKTWQMVASSIGKTVQECKQAITPVKDLYIVLDHTRAALVLI 456

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
            DG LP+N G G  +R I+RR     +  G+ + L
Sbjct: 457 QDGALPSNTGGGSNIRNIIRRVFAIMKKNGWWDKL 491


>gi|159108361|ref|XP_001704452.1| Alanyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157432515|gb|EDO76778.1| Alanyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 969

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 14/283 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA---IGDG--IRLQITDVQKKAEGIFVH-HAIVERGILR 566
           V+ D+T FY  +GGQ  DTG     +G+G  I   + DV+K    +    +A V   I++
Sbjct: 567 VILDKTVFYPTSGGQQHDTGVLKFLLGNGKMIIHDVVDVRKVGHCVMHELNAPVADSIVQ 626

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              S+ + ID   R QL  +H+A H++H   + +LG HV Q G+  T +    D+TH + 
Sbjct: 627 G-TSVSMAIDSARRDQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEVATLDITHYRS 685

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +T  E ++IE   N +I  N+P+    + + +A      +L   G      VR V +   
Sbjct: 686 LTFDEERAIEREANRMIRDNIPIRKYQLPKNEAEKKYGFSLYQGGVVPGSTVRCVDITD- 744

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
               H +  C GTH+ +TG+I L+ IV  + I  G+ R+  + G+RA      Q E L +
Sbjct: 745 ----HDTEACCGTHLDNTGKIGLIRIVKSTRISDGVVRLTFVAGERALDFTDTQSEILHT 800

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
                 V Q  +V   ++ +   ++L+ +  + + +L   +L+
Sbjct: 801 QMDRWGVDQAGIVKTGDKFFTAMKRLENLTVQLRGELLTSNLT 843



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 139/356 (39%), Gaps = 107/356 (30%)

Query: 7   IRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTT 63
           +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P    +  
Sbjct: 91  VWNSFAQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQ 150

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+         F
Sbjct: 151 PQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIR---------F 197

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L+                  W +  G+  D++  I    + W  A  G  GPC E +F 
Sbjct: 198 NLE------------------WLQTMGIDLDEVTLIA---DVW--AGGGNLGPCVE-YFM 233

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G                 +E+ N+VFM+F+         LP   +D G+GLER+  +L 
Sbjct: 234 HG-----------------LEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIPWLLN 276

Query: 239 EKTNNY-------------------------------------DIDLFKHLIQAS---EQ 258
               +Y                                     +ID    + QA    ++
Sbjct: 277 RSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWALIKE 336

Query: 259 VTGMKYEG-NNIV----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
            TG+  E   N++       +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 337 RTGLTTEDITNVIEPVRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 392


>gi|10798907|gb|AAG23137.1|AF245445_1 alanyl-tRNA synthetase [Giardia intestinalis]
          Length = 954

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 138/283 (48%), Gaps = 14/283 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA---IGDG--IRLQITDVQKKAEGIFVH-HAIVERGILR 566
           V+ D+T FY  +GGQ  DTG     +G+G  I   + DV+K    +    +A V   I++
Sbjct: 552 VILDKTVFYPTSGGQQHDTGVLKFLLGNGKMIIHDVVDVRKVGHCVMHELNAPVADSIVQ 611

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              S+ + ID   R QL  +H+A H++H   + +LG HV Q G+  T +    D+TH + 
Sbjct: 612 G-TSVSMAIDSARRDQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEVATLDITHYRS 670

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +T  E ++IE   N +I  N+P+    + + +A      +L   G      VR V +   
Sbjct: 671 LTFDEERAIEREANRMIRDNIPIRKYQLPKNEAEKKYGFSLYQGGVVPGSTVRCVDITD- 729

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
               H +  C GTH+ +TG+I L+ IV  + I  G+ R+  + G+RA      Q E L +
Sbjct: 730 ----HDTEACCGTHLDNTGKIGLIRIVKSTRISDGVVRLTFVAGERALDFTDTQSEILHT 785

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
                 V Q  +V   ++ +   ++L+ +  + + +L   +L+
Sbjct: 786 QMDRWGVDQAGIVKTGDKFFTAMKRLENLTVQLRGELLTSNLT 828



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 139/356 (39%), Gaps = 107/356 (30%)

Query: 7   IRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTT 63
           +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P    +  
Sbjct: 76  VWNSFAQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQ 135

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+         F
Sbjct: 136 PQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIR---------F 182

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L+                  W +  G+  D++  I    + W  A  G  GPC E +F 
Sbjct: 183 NLE------------------WLQTMGIDLDEVTLIA---DVW--AGGGNLGPCVE-YFM 218

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G                 +E+ N+VFM+F+         LP   +D G+GLER+  +L 
Sbjct: 219 HG-----------------LEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIPWLLN 261

Query: 239 EKTNNY-------------------------------------DIDLFKHLIQAS---EQ 258
               +Y                                     +ID    + QA    ++
Sbjct: 262 RSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWALIKE 321

Query: 259 VTGMKYEG-NNIV----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
            TG+  E   N++       +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 322 RTGLTTEDITNVIEPVRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 377


>gi|6176444|gb|AAF05594.1|AF188719_1 alanyl-tRNA synthetase [Giardia intestinalis]
          Length = 969

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 137/283 (48%), Gaps = 14/283 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA---IGDG--IRLQITDVQKKAEGIFVH-HAIVERGILR 566
           V+ D+T FY  +GGQ  DTG     +G+G  I   + DV+K    +    +A V   I++
Sbjct: 567 VILDKTVFYPTSGGQQHDTGVLKFLLGNGKMIIHDVVDVRKVGHCVMHELNAPVADSIVQ 626

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              S+ + ID   R QL  +H+A H++H   + +LG HV Q G+  T +    D+TH + 
Sbjct: 627 G-TSVSMAIDSARRDQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEVATLDITHYRS 685

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +T  E ++IE   N +I  N+P+    + +  A      +L   G      VR V +   
Sbjct: 686 LTFDEERAIEREANRMIRDNIPIRKYQLPKNKAEKKYGFSLYQGGVVPGSTVRCVDITD- 744

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
               H +  C GTH+ +TG+I L+ IV  + I  G+ R+  + G+RA      Q E L +
Sbjct: 745 ----HDTEACCGTHLDNTGKIGLIRIVKSTRISDGVVRLTFVAGERALDFTDTQSEILHT 800

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
                 V Q  +V   ++ +   ++L+ +  + + +L   +L+
Sbjct: 801 QMDRWGVDQAGIVKTGDKFFTAMKRLENLTVQLRGELLTSNLT 843



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 139/356 (39%), Gaps = 107/356 (30%)

Query: 7   IRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTT 63
           +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P    +  
Sbjct: 91  VWNSFAQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQ 150

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+         F
Sbjct: 151 PQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIR---------F 197

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L+                  W +  G+  D++  I    + W  A  G  GPC E +F 
Sbjct: 198 NLE------------------WLQTMGIDLDEVTLIA---DVW--AGGGNLGPCVE-YFM 233

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G                 +E+ N+VFM+F+         LP   +D G+GLER+  +L 
Sbjct: 234 HG-----------------LEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIPWLLN 276

Query: 239 EKTNNY-------------------------------------DIDLFKHLIQAS---EQ 258
               +Y                                     +ID    + QA    ++
Sbjct: 277 RSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWALIKE 336

Query: 259 VTGMKYEG-NNIV----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
            TG+  E   N++       +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 337 RTGLTTEDITNVIEPVRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 392


>gi|299561760|gb|ADJ36952.1| alanyl-tRNA synthetase [Pipunculus sp. JFG-2010]
          Length = 136

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 14/140 (10%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           MLGN+SFG YFK+     AW+ LT    L + RLY+T +  DE        E  + W  +
Sbjct: 1   MLGNWSFGDYFKKEICAWAWEFLTNRLKLPKERLYVTYFGGDEDSGLSPDLECRQTWIDL 60

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIW 201
            GL  + ++  +  DNFW M E+GPCGPCSE+ FD+  G  +P  +   + +    +EIW
Sbjct: 61  -GLKPEHVLPGSMKDNFWEMGESGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIW 116

Query: 202 NLVFMQFEQQNKQERFILPK 221
           NLVF+Q+ ++      +LP+
Sbjct: 117 NLVFIQYNREADGSLKMLPR 136


>gi|15430869|gb|AAK98603.1|AF406753_1 analyl-tRNA synthetase-like protein [Actinidia deliciosa]
          Length = 209

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 114/216 (52%), Gaps = 13/216 (6%)

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+HV+Q GS + P+ LRFD TH   ++  EL  +E+ VN  I   LPV     N  +A A
Sbjct: 1   GTHVNQAGSLVAPERLRFDFTHFDKVSDEELARVEEIVNQKIWAKLPVNIFQKNIAEAKA 60

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY D V VV +     G +   LCGG HV++T EI L  IV+E+ I AG R
Sbjct: 61  VGAMALFG-KYGDIVPVVQI-----GDYGLELCGGCHVANTSEIGLFKIVAEAGIGAGTR 114

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFL-KVSQGNVVGRVEEIWEEYRKLQ-----LIHA 775
           RIEA+TG+ A + L+ +  +  S   FL K +   +  R+E + ++  +L+     L   
Sbjct: 115 RIEAVTGKAAFT-LLNEPSQGSSAYRFLVKTTIEGIPDRIEGLSQQIHQLEKEKESLTAK 173

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
               +LN    S  KI  V+ ++  I   D   L++
Sbjct: 174 LGNTELNDIKQSIKKIEGVSVVARKIEGQDMNGLRA 209


>gi|304316619|ref|YP_003851764.1| threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778121|gb|ADL68680.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 394

 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 174/378 (46%), Gaps = 41/378 (10%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E++ D+T FY E+GGQ  DTG    DGI++    ++       V H + E   +    S+
Sbjct: 29  EIILDETYFYPESGGQPADTGTI--DGIKVDNVVLKNNK----VIHMLKE---IPKNKSV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      HS  HLL      +  +        I  D     +T++  ++ +E
Sbjct: 80  FCEIDWEKRFDNMQQHSGQHLLSAVFYKLYNAETE--SFSIGDDCSHITLTNNN-LSESE 136

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L   E+  N II  NLP+ T  ++ E+ I          K N+ +R+V ++  D      
Sbjct: 137 LAVAEEEANKIIYSNLPISTYFVDNEELIKLPLRK--KPKVNENIRIVEIKDID-----Y 189

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           + CGGTHV S GEI L+ I +    + GI RIE + G RA      ++  +  L S L V
Sbjct: 190 SPCGGTHVKSLGEIGLIKIRNYEKSKKGI-RIEFLCGLRAIKDYNVKNNCINMLISLLSV 248

Query: 752 SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
            +  ++ +V +++ E ++L+          L++   KL     DL  +K+    F     
Sbjct: 249 KEDEILDKVNKLFLENKELKKELNKMKENILLYEAEKLISESIDLKKYKLVTKTF----- 303

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++ D KEL+++   + K  + GI+ +V  S  K A+++I  +ED+    N+   + L   
Sbjct: 304 NDRDLKELRTLSQIVTK--EKGIVCIV-CSISKNANIVISRSEDVNININSFFNSVLD-- 358

Query: 862 VLGGGGGGGRPHMAQSGG 879
            +  G GGG   M Q  G
Sbjct: 359 -IIDGNGGGNQKMCQGCG 375


>gi|241709470|ref|XP_002403410.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215505070|gb|EEC14564.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 104

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 9/92 (9%)

Query: 45  PFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           PF+N+         +     QKC+R GGKHNDL++VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 6   PFENL---------KRAANYQKCIRVGGKHNDLEDVGKDLNHHTFFEMLGNWSFGDYFKK 56

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA 136
            A  +AW+LLT+ + L + RLY+T +  D+EA
Sbjct: 57  EACAMAWELLTEVYRLPKERLYVTYFAGDKEA 88


>gi|13541650|ref|NP_111338.1| alanyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|14325050|dbj|BAB59975.1| tRNA synthetase Ala [Thermoplasma volcanium GSS1]
          Length = 878

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 11/222 (4%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T FY E GGQ  D G     G ++ + DVQK    I VH      G +   + +
Sbjct: 521 EVILDKTAFYPEGGGQPADHGYFEFKGKKINVLDVQKHGNAI-VHKL---DGEIPEGVRV 576

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R +L ++H+ATHLL   L  ILG HV Q+G          D+TH K I    
Sbjct: 577 KGVIDWERRSRLMVHHTATHLLLGVLRDILGDHVWQSGVQKDVSESHLDITHYKRIDEDT 636

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVH 689
           +K IE  + ++I +  PV  + ++   AI      L   G   + +VRVV +E    GV 
Sbjct: 637 IKKIEHRIFELITEGRPVSVKNLDWYMAIGKYGFRLFEGGVPLSPKVRVVEIE----GVD 692

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +   CGGTH+ +   I +L I    +I+  I RI  + G  A
Sbjct: 693 AEG-CGGTHLKNISSIGVLKIKKIEAIQENIYRITFVAGVPA 733



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 187/461 (40%), Gaps = 113/461 (24%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61
            +S +R  F +FF+K GH+LL    ++P     ++  N+ +  F+ ++ +G  KP    +
Sbjct: 63  TLSEMRKAFFDFFEKRGHKLLEPYPVVPRWREDVLLVNASIYDFQPHVTSGIVKPPGNPI 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + +F       Y+KE  ++ +++ LT 
Sbjct: 123 VMSQPSIRM----NDVDLVGVTGRHLTSFEMLCHDAFNSKNDFVYWKEETVRYSYEFLT- 177

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                       GL  D  + IT  +  WS    G  G   E+F
Sbjct: 178 ---------------------------DGLGIDGSL-ITYKEKPWSGG--GNAGNALEVF 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSI-DTGMG 229
                              R +E+  LVFM  ++  + E      R+    M I DTG G
Sbjct: 208 V------------------RGLEVATLVFMDMKEDQEGEVEIEGTRYTKMDMQIVDTGYG 249

Query: 230 LERMATVLQEKTNNY--------------------DIDLFKHLIQASE-----------Q 258
           LER+  + Q     Y                    D +    +++ S             
Sbjct: 250 LERLTWLSQGTPTVYQAIYPEIIDYVLENSYVESIDNEFLSDVVRVSVMREPYDEAFVLS 309

Query: 259 VTGMKY--------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
             G KY        +   + +  V++DH RS   +    ++P+N   GY+ R ++RR++ 
Sbjct: 310 TLGEKYPNALERFEKAKKVRDIFVLIDHARSLMHMFEAFVIPSNVKVGYLARLLIRRSIR 369

Query: 311 YARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
             + +G+   L ++L+     E+     P  I+    I++ L  E +++ +   RG  ++
Sbjct: 370 AQKNIGFKGSL-INLIERNYNELKDIVKPLPIE---FIKDVLSIEMQKYSELEKRGQQVI 425

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + +L    K  I   D+   LYD+HG+  D++  +   +GL
Sbjct: 426 EKILK--TKKSIDIDDLVL-LYDSHGISPDVVAAMAAEKGL 463


>gi|22096202|sp|Q97AH7|SYA_THEVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 11/222 (4%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T FY E GGQ  D G     G ++ + DVQK    I VH      G +   + +
Sbjct: 519 EVILDKTAFYPEGGGQPADHGYFEFKGKKINVLDVQKHGNAI-VHKL---DGEIPEGVRV 574

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R +L ++H+ATHLL   L  ILG HV Q+G          D+TH K I    
Sbjct: 575 KGVIDWERRSRLMVHHTATHLLLGVLRDILGDHVWQSGVQKDVSESHLDITHYKRIDEDT 634

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVH 689
           +K IE  + ++I +  PV  + ++   AI      L   G   + +VRVV +E    GV 
Sbjct: 635 IKKIEHRIFELITEGRPVSVKNLDWYMAIGKYGFRLFEGGVPLSPKVRVVEIE----GVD 690

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +   CGGTH+ +   I +L I    +I+  I RI  + G  A
Sbjct: 691 AEG-CGGTHLKNISSIGVLKIKKIEAIQENIYRITFVAGVPA 731



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 187/461 (40%), Gaps = 113/461 (24%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAV 61
            +S +R  F +FF+K GH+LL    ++P     ++  N+ +  F+ ++ +G  KP    +
Sbjct: 61  TLSEMRKAFFDFFEKRGHKLLEPYPVVPRWREDVLLVNASIYDFQPHVTSGIVKPPGNPI 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + +F       Y+KE  ++ +++ LT 
Sbjct: 121 VMSQPSIRM----NDVDLVGVTGRHLTSFEMLCHDAFNSKNDFVYWKEETVRYSYEFLT- 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                       GL  D  + IT  +  WS    G  G   E+F
Sbjct: 176 ---------------------------DGLGIDGSL-ITYKEKPWSGG--GNAGNALEVF 205

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSI-DTGMG 229
                              R +E+  LVFM  ++  + E      R+    M I DTG G
Sbjct: 206 V------------------RGLEVATLVFMDMKEDQEGEVEIEGTRYTKMDMQIVDTGYG 247

Query: 230 LERMATVLQEKTNNY--------------------DIDLFKHLIQASE-----------Q 258
           LER+  + Q     Y                    D +    +++ S             
Sbjct: 248 LERLTWLSQGTPTVYQAIYPEIIDYVLENSYVESIDNEFLSDVVRVSVMREPYDEAFVLS 307

Query: 259 VTGMKY--------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
             G KY        +   + +  V++DH RS   +    ++P+N   GY+ R ++RR++ 
Sbjct: 308 TLGEKYPNALERFEKAKKVRDIFVLIDHARSLMHMFEAFVIPSNVKVGYLARLLIRRSIR 367

Query: 311 YARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
             + +G+   L ++L+     E+     P  I+    I++ L  E +++ +   RG  ++
Sbjct: 368 AQKNIGFKGSL-INLIERNYNELKDIVKPLPIE---FIKDVLSIEMQKYSELEKRGQQVI 423

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + +L    K  I   D+   LYD+HG+  D++  +   +GL
Sbjct: 424 EKILK--TKKSIDIDDLVL-LYDSHGISPDVVAAMAAEKGL 461


>gi|308160664|gb|EFO63139.1| Alanyl-tRNA synthetase [Giardia lamblia P15]
          Length = 969

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 128/268 (47%), Gaps = 16/268 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC---AIGDGIRL--QITDVQKKAEGIF--VHHAIVERGIL 565
           V+ D+T FY  +GGQ  DTG     +G G      + DV+K    +   +   I +  + 
Sbjct: 567 VILDKTVFYPTSGGQQHDTGVLKFILGRGKMFIHNVVDVRKVGHCVMHELDAPIADSIVQ 626

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
            T +S+   ID   R QL  +H+A H++H   + +LG HV Q G+  T +    D+TH +
Sbjct: 627 GTSVSMA--IDSARRDQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTEAATLDITHYR 684

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEY 683
            +T  E ++IE   N +I +N+P+    + + +A      +L   G      VR V +  
Sbjct: 685 SLTFNEERAIEREANRMIRENIPIRKYQLPKNEAEKRYGFSLYQGGVVPGSIVRCVDI-- 742

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                H +  C GTH+ +TG+I L+ I+  + I  G+ R+  + G+RA      Q E L 
Sbjct: 743 ---ANHDTEACCGTHLDNTGKIGLIRIIKSTRISDGVVRLTFVAGERALDFTDTQSEILH 799

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +      V Q  +V   ++ +   ++L+
Sbjct: 800 TQMDRWGVDQAGIVKTGDKFFTAMKRLE 827



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 137/358 (38%), Gaps = 111/358 (31%)

Query: 7   IRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTT 63
           +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P    +  
Sbjct: 91  VWNSFTQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQ 150

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEF 118
            Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+         F
Sbjct: 151 PQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIR---------F 197

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L+                  W +  G+  D++  I    + W  A  G  GPC E F  
Sbjct: 198 NLE------------------WLQTMGIDLDEVTLIA---DVW--AGGGNLGPCVEYFMH 234

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                              +E+ N+VFM+F+         LP   +D G+GLER+  +L 
Sbjct: 235 G------------------LEVGNMVFMEFKAFTDGTIEPLPVQVVDVGIGLERIPWLLN 276

Query: 239 EKTNNY-------------------------------------DIDLFKHLIQAS---EQ 258
               +Y                                     +ID    + QA    ++
Sbjct: 277 RSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWALIKE 336

Query: 259 VTGMKYEGNNIVN-------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
            TG+  E   I+N         +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 337 RTGLTTE--EIINVIEPVRHMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 392


>gi|67922592|ref|ZP_00516098.1| Alanine--tRNA ligase [Crocosphaera watsonii WH 8501]
 gi|67855520|gb|EAM50773.1| Alanine--tRNA ligase [Crocosphaera watsonii WH 8501]
          Length = 269

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 139/271 (51%), Gaps = 13/271 (4%)

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IED +N  IA+       +M  E A   GA A+ G KY   VRV+ V     GV S  LC
Sbjct: 2   IEDLINTWIAEAHDTEIEVMPIETAKEKGAIAMFGEKYGAEVRVIDVP----GV-SMELC 56

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV +T EI L  I+SES I +G+RRIEA+ G     +L  ++  +K L    K+   
Sbjct: 57  GGTHVRNTAEIGLFKIMSESGISSGVRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKPE 116

Query: 755 NVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL 809
            +  R+  +  E +  Q  L   K++L +   D        I +   +   + E+D+K L
Sbjct: 117 EISDRITTLQSELKTTQKELEGVKQELAIAKSDQLLNEAESIGEFKLLVSDMGEMDAKAL 176

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGG 867
           ++  + LQ+K+  G ++L  I  E K S L+      +++   +   +   ++  + GGG
Sbjct: 177 QTAAERLQQKLGEGAVILGSIPSEGKVS-LVAAFSKKVNKEKQLQAGKFIGQIAKICGGG 235

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGRP++AQ+GG + +K  +A++     LK+
Sbjct: 236 GGGRPNLAQAGGRDPSKLSEALSTAKQQLKE 266


>gi|145525685|ref|XP_001448659.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416214|emb|CAK81262.1| unnamed protein product [Paramecium tetraurelia]
          Length = 975

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 15/276 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ +Q+ FY   GGQ  D G     G R  + +VQK  + + +H  I+E+ +     + V
Sbjct: 581 VILNQSAFYPFGGGQDFDQGWLTIQGERHYVNNVQKVGK-VVLH--ILEKPLPNAVDTYV 637

Query: 573 -----LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
                  ID + R  L  +H+ATH++  A   +LG HV QNG+  +      D+TH  P+
Sbjct: 638 GQDVLAEIDLERRSILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVHNAHLDITHFAPL 697

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYED 685
           +  + ++IE+ VN II     +    MN+ DA       L   G    + +RVV+++   
Sbjct: 698 SKEQEQAIENEVNKIILSAKQINKGFMNKADAEKEYGFRLYQGGIVPGNELRVVNID--- 754

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G+   A C GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E + SL
Sbjct: 755 -GIDVEACC-GTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEMINSL 812

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                +S+  +V    +I++E +  +  + + K +L
Sbjct: 813 VKLWSISKTQLVEEGSKIFQEKKHYESAYNQLKAEL 848



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 172/439 (39%), Gaps = 108/439 (24%)

Query: 18  NGHELLPSSSLIPCND----PTLM-------FTNSGMVPFKNI-FTGQEKPVYQAVTTVQ 65
           NG +   +S+ +PC      P +        +  +G+  F+    TG+  P    +   Q
Sbjct: 129 NGFKKSLTSARVPCTAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQ 188

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDL 120
            CVR     NDLDN+G T RH++ F MLG  +F       +FKE  ++  +  LT+E ++
Sbjct: 189 FCVR----FNDLDNIGLTGRHYSGFIMLGIQTFNYPDKYVFFKEECVEFNYRWLTEELEI 244

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +                           D I  I   ++ W  A  G  GP  E F +  
Sbjct: 245 N--------------------------PDDITFI---EDVW--AGGGNLGPSVEYFVN-- 271

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE--------R 232
                GL           E+ N+VFMQ++  +      LP   IDTG+GLE         
Sbjct: 272 -----GL-----------EVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLELTFDVFAGA 315

Query: 233 MATVLQEKTNNYDIDLFKHL-----------------------IQASEQVTGMKYEGNNI 269
            A + Q+    Y  D++K                          Q    V  +K E   +
Sbjct: 316 FAFLAQKLQVEYSNDVWKAFGPYSCLLNVDEVENVDKTWEFISSQIGYDVQTIKKEIEQL 375

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
            +  +I+DH R+   ++ DG LP+N G G  +R I+RR     +   + + L M  L  L
Sbjct: 376 KDMYIILDHTRTVMMVVTDGSLPSNVGGGSNIRNIIRRVFAVLKKNNWWDKLGMDGLLQL 435

Query: 330 CTE----MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
             E    +   Y    + K   ++ ++ E ER+ KT D    +    L     +++   D
Sbjct: 436 FQEHKNDLAKLYGPFGEYKSF-DQIIKQEYERWAKT-DDDKKVKLEKLLKQKNNQLSIDD 493

Query: 386 VAFKLYDTHGLPLDIMQDI 404
             F +  THG+P D +  I
Sbjct: 494 WIFAM-STHGIPADTISQI 511


>gi|57641542|ref|YP_184020.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           kodakarensis KOD1]
 gi|57159866|dbj|BAD85796.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           kodakarensis KOD1]
          Length = 406

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 165/380 (43%), Gaps = 40/380 (10%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EAV   K+ V+ D+T FY E GGQ  D G   GDG R+ +  V  K E    H   +E  
Sbjct: 23  EAVEDGKIRVLLDRTIFYPEGGGQPSDRGIIEGDGFRVLVEKVSGKEE--IWHEGKLEGR 80

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +      + L +D++ R +   NH+  H+L   +  + G+  +  G  I  +  + ++ +
Sbjct: 81  LPEAREEVRLVLDWEWRYENMKNHTGQHVLSAIIKGLYGAETT--GFQIFENYNKIEIDY 138

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLGTKYNDRVRVVSV 681
              +T   ++ IE   N++I  +LPV         ED +      +  +K +DR+R++ +
Sbjct: 139 PGELTWEMIQEIERKTNEVIWGDLPVEVEEYQYLPEDVVKILRKHV--SKVHDRIRIIKI 196

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G   +  CGGTHV ST EI  L I+        + RIE + G RA   L G    
Sbjct: 197 -----GTVDATPCGGTHVKSTREIGFLKILRFYRKSRKLWRIEFVAGNRALRTLNGILSD 251

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKL---------QLIHAKRKLQLNVEDLSCHKIA 792
             +    +      +V R++E+ E   KL         +L   K K  L        KI 
Sbjct: 252 YWNALDEMPNKNPPLVERIQELKETMDKLEAEKDELKEELWEWKGKYLLE----KSEKIG 307

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDR 849
           D+     +++ ++ K +K V     K ++     ++++VG     +  VL    ED+   
Sbjct: 308 DI----RVVTLIEGKPMKEVQGFAVKFVEKNPRTVLLVVG-----ENYVLFARNEDV--N 356

Query: 850 FNAVDLARLSAKVLGGGGGG 869
            +  +L    A  LGG GGG
Sbjct: 357 VSMRELFERVASQLGGKGGG 376


>gi|145492553|ref|XP_001432274.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399384|emb|CAK64877.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 15/276 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ +Q+ FY   GGQ  D G     G R  + +VQK  + + +H  I+E+ +     + V
Sbjct: 560 VILNQSAFYPFGGGQDFDQGWLTIQGERHFVNNVQKVGK-VVLH--ILEKPLPNAVDTYV 616

Query: 573 -----LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
                  ID + R  L  +H+ATH++  A   +LG HV QNG+  +      D+TH  P+
Sbjct: 617 GQEVQAEIDLERRSILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVHNAHLDITHFAPL 676

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYED 685
           +  + ++IE+ VN II     +    MN+ DA       L   G    + +RVV+++   
Sbjct: 677 SKEQEQAIENEVNKIILSAKQINKGFMNKADAEKEYGFRLYQGGIVPGNELRVVNID--- 733

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G+   A C GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E + SL
Sbjct: 734 -GIDVEACC-GTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEMINSL 791

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                +S+  +V    +I++E +  +  + + K +L
Sbjct: 792 VKLWSISKTQLVEEGSKIFQEKKHYESAYNQLKAEL 827



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 176/447 (39%), Gaps = 120/447 (26%)

Query: 18  NGHELLPSSSLIPCND----PTLM-------FTNSGMVPFKNI-FTGQEKPVYQAVTTVQ 65
           NG +   +S+ +PC      P +        +  +G+  F+    TG+  P    +   Q
Sbjct: 104 NGFKKSLTSARVPCTAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQ 163

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDL 120
            CVR     NDLDN+G T RH++ F MLG  +F       +FKE  ++  +  LT+E ++
Sbjct: 164 FCVR----FNDLDNIGLTGRHYSGFIMLGIQTFNYPDKYVFFKEECVEFNYRWLTEELEI 219

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +                           D I  I   ++ W  A  G  GP  E F +  
Sbjct: 220 N--------------------------PDDITFI---EDVW--AGGGNLGPSVEYFVN-- 246

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM------- 233
                GL           E+ N+VFMQ++  +      LP   IDTG+GLER+       
Sbjct: 247 -----GL-----------EVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLERIPWLVNGT 290

Query: 234 ------------ATVLQEKTNNYDIDLFKHL-----------------------IQASEQ 258
                       A + Q+    Y  D++K                          Q    
Sbjct: 291 PTSYFDVFAGAFAFLAQKLQVEYSNDVWKAFGPYSCLLNVDEVENVDKTWEFISSQIGYD 350

Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           V  +K E   + +  +I+DH R+   ++ DG LP+N G G  +++  ++++C        
Sbjct: 351 VQTIKKEIEQLKDMYIILDHTRTVMMVVTDGSLPSNVGGGSNIQKYHQKSICSVE----E 406

Query: 319 EPLMMHLLPA-LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
           E L+  +    +  ++   Y    + K   ++ ++ E ER+ KT D   V L+ +L    
Sbjct: 407 EQLVGQIRNGWIINDLAKLYGPFGEYKSF-DQIIKQEYERWAKTDDDKKVKLEKLLKQ-- 463

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           ++  L+ D       THG+P D +  I
Sbjct: 464 RNNQLSIDDWIFAMSTHGIPADTISQI 490


>gi|330974931|gb|EGH74997.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 80

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/80 (57%), Positives = 57/80 (71%), Gaps = 8/80 (10%)

Query: 134 EEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEIFFD G  I GG
Sbjct: 1   DEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEIFFDHGPEIWGG 60

Query: 187 LPGSSEE-GERYIEIWNLVF 205
            PGS EE G+RYIEIWN VF
Sbjct: 61  PPGSPEEDGDRYIEIWNNVF 80


>gi|323704225|ref|ZP_08115804.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536291|gb|EGB26063.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 395

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 179/391 (45%), Gaps = 41/391 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            ++++  V+ +  EV+ D+T FY E+GGQ  D+G    DGI         K E +F+   
Sbjct: 17  AKVIDINVTNEYCEVILDKTYFYPESGGQPADSGFI--DGI---------KVENVFLRDD 65

Query: 559 IVERGILRTEMS---LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
            V   +L+T      ++  ID++ R      HS  HLL      +  +    +   I  D
Sbjct: 66  KVIH-VLKTPPKNDLVICEIDWEKRFDNMQQHSGQHLLSAVFYKLFNAET--DSFSIGDD 122

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
                +T+S  ++   LK +E   N +I  NLPV +  +  +D              N R
Sbjct: 123 SSHITLTNSN-LSEDNLKEVEIETNRLIYLNLPVTSYFVKDDDLKKLPLRKKPKVDENIR 181

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +    VE +D      + CGGTHV S GEI ++ I      + G+ RIE + G RA +  
Sbjct: 182 I----VEIKD---FDYSPCGGTHVKSLGEIGIVKIKKFERTKKGL-RIEFVCGFRAFNDY 233

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK-LQLNVEDLSCHKIA 792
           + ++  + SL + L   +  ++ +V +I +E ++L  +LI  K   LQ   E L    + 
Sbjct: 234 LKKNNYINSLITSLSAKEEEILEKVNKILDENKELKKELIKLKDNILQYEAEKLVAESVN 293

Query: 793 DVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             NF  ++ I ++ D KEL+ V+  +  K +  + +L GI+     +++I  ++D+    
Sbjct: 294 LKNFKLVTKIFNDRDMKELR-VLSQIITKGKGFVCILGGIT--DCGNIVISRSDDV---- 346

Query: 851 NAVDLARLSAKVLG--GGGGGGRPHMAQSGG 879
             +D+     ++L    G GGG   + Q  G
Sbjct: 347 -DIDINSFFKEILDVIEGNGGGNQKICQGSG 376


>gi|158321701|ref|YP_001514208.1| threonyl/alanyl tRNA synthetase SAD [Alkaliphilus oremlandii
           OhILAs]
 gi|158141900|gb|ABW20212.1| Threonyl/alanyl tRNA synthetase SAD [Alkaliphilus oremlandii
           OhILAs]
          Length = 401

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 173/410 (42%), Gaps = 50/410 (12%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E++EE     +  +  D+T FY E GGQ  D G      I      V +K + I+    +
Sbjct: 20  EVIEE---DHQFHIRLDRTYFYPEGGGQPSDVGYIESSPIIY----VYEKEDLIY---HV 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITP 614
            ER   + +  +   ID+Q R      H   H+L  +      +T +G H+S+  S I  
Sbjct: 70  TERKPSKFK-KVQCEIDWQVRFDYMQQHLGQHILSASFVELFDATTIGFHLSKEYSTIDI 128

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D         K I S   K +ED  N+ IA NL V T     ++         +  K   
Sbjct: 129 D---------KVIDSDGFKKVEDLANETIANNLTVETLFPTEQELRKLPLRKQVSEKVQG 179

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R+V +     G      C GTH  ST E+ L+ I+     + G+R IE + G+RA   
Sbjct: 180 PIRLVKI-----GDFDLVACCGTHPKSTLEVQLIKIIKVEKYKVGMR-IEFLCGKRAIGD 233

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD- 793
              + E LK +A  L V++ +V  RV  +  +   L    + R L+    ++ CH +   
Sbjct: 234 YSKKQESLKEVARLLGVNEQDVPARVHHMSSDINDLH--SSVRALR---SEVICHTVEKM 288

Query: 794 ---------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                    +  +  +   +D K + ++  A Q      +I L GI  + KA +L   ++
Sbjct: 289 LRDAETIDGIKVIKEVYQNIDLKYVNNI--ATQLTAYPNVIALFGIEADDKAHLLFAQSK 346

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +L  +  ++++    A  L  G GGG    AQ GG N N  D +IA   S
Sbjct: 347 EL--KLLSMNVLLKDAITLIDGKGGGSDFSAQGGGKNNNNLDSSIAYAYS 394


>gi|147918761|ref|YP_687515.1| alanyl-tRNS synthetase-related protein [uncultured methanogenic
           archaeon RC-I]
 gi|110622911|emb|CAJ38189.1| alanyl-tRNS synthetase-related protein [uncultured methanogenic
           archaeon RC-I]
          Length = 390

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 170/395 (43%), Gaps = 54/395 (13%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           Q E+V       K  VV  +T FY E GGQ  D G   G    + +  V +  EG  V+H
Sbjct: 16  QTEVVNVLNKDGKYHVVLAETNFYPEGGGQPADRGTIAG----IPVEHVYE--EGGEVYH 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC-ITPDG 616
            +        E ++   +D+  R  L   HS  HLL    + +  +H  + GS  ++ +G
Sbjct: 70  VL---AFAPAEKTVACKLDWARRFDLMQQHSGQHLLS---AVMYNNHGWETGSLHMSEEG 123

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR- 675
           L  DV  +  +T   LK IED  N+++ ++L + T I+  E+A           KY +R 
Sbjct: 124 LSVDVL-TPDVTPEALKEIEDAANEVVTRDLEIKTHIVTPEEA----------KKYPNRK 172

Query: 676 -------VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                  +R+V +       H  + C GTHV+ TGEI ++ I     ++  +R      G
Sbjct: 173 IPPTAGTIRIVEI-----SSHDFSPCCGTHVARTGEIGIIKITGTQKMKDSMRLFFKCGG 227

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDL 786
           +  R +   Q E +  L+   K  QG ++ R+E    E R    +L   K KL L +E  
Sbjct: 228 RALRDYQAKQ-EIITKLSQLFKADQGKLLSRIEAHEAEARAHWKELTELKDKL-LKIEAG 285

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTED 845
           +  + A       I    + K    +M   +  +Q+G  IM++    EK+   L+     
Sbjct: 286 NLARSASTPV---IRVAYEDKSFNDLMSLSKYLLQAGDFIMILASVPEKR---LLFARSK 339

Query: 846 LLDRFNAVDLARLSAKVLGG--GGGGGRPHMAQSG 878
             D    VD  +L  + L    G GGG+P  A +G
Sbjct: 340 KFD----VDCGKLMKEHLAAFNGKGGGKPEFANAG 370


>gi|15488935|gb|AAH13593.1| AARS2 protein [Homo sapiens]
          Length = 551

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 184/431 (42%), Gaps = 53/431 (12%)

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           + +++   + G  V     GQ+  ++ D+T FYAE GGQ  D G  +  G    +  V +
Sbjct: 99  AQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVAR 158

Query: 549 -KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
            +  G F+ H  V    LR    + L +D   R      H+ATHLL+ AL   LG    Q
Sbjct: 159 AQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQ 218

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS + P+ LR DVT   P+T  +L+++E+ V + + Q+  V       E+   +  A +
Sbjct: 219 QGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYM-----EEVPLALTAQV 273

Query: 668 LGTKYNDRV---------------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            G +  D V                 +    +     S  LC GTH+  TG +  L I+ 
Sbjct: 274 PGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIG 333

Query: 713 ESSIRAGIRRIEAITGQRA-RSHLMGQD---------EKL----KSLASFLKVSQ--GNV 756
           +  +  G  R+ A+TG++A ++  +GQ          E+L    + +A  L++S+  G +
Sbjct: 334 DRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRL 393

Query: 757 VGRVE-EIWEEYRKLQLIH-----------AKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           +  VE  +  ++++ +L+            A RKLQ+        ++ + +    +I + 
Sbjct: 394 IEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDT 453

Query: 805 DSKE----LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            S E    L  V+  L ++  S  ++L+      K      V +  +  F A   A    
Sbjct: 454 VSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVC 513

Query: 861 KVLGGGGGGGR 871
             +GG   G R
Sbjct: 514 SHMGGKAWGSR 524


>gi|71051710|gb|AAH98738.1| Aars protein [Rattus norvegicus]
          Length = 369

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  E+ VN +I  
Sbjct: 5   NHTATHILNFALRSVLG-DADQKGSLVAPDRLRFDFTAKGAMSTEQIKKTEEIVNGMIEA 63

Query: 646 NLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYED------GGVHSSAL 693
             PV T       A A  G  A+    Y D VRVVS+     E  D      G + S   
Sbjct: 64  AKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEF 123

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
           CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   KSL++ 
Sbjct: 124 CGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLSAM 178


>gi|297737255|emb|CBI26456.3| unnamed protein product [Vitis vinifera]
          Length = 267

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 5/137 (3%)

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           S++KAI    E +E A +G +V ++ + T FY E GGQ+ DTG   G     Q+++VQ  
Sbjct: 31  SVIKAIYTGTEFLESAAAGDEVGIILETTSFYTEKGGQIFDTGSLEGSCGSFQVSNVQ-- 88

Query: 550 AEGIFVHH---AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G FV H      E G       ++  +DY  R+ ++ NH+ TH+L+ A+  +LG+HV 
Sbjct: 89  IYGGFVLHIGSVTGEIGRFSVGDKVICKVDYDRRKLIAPNHTYTHMLNFAMREVLGNHVD 148

Query: 607 QNGSCITPDGLRFDVTH 623
           Q GS + P+ LRFD +H
Sbjct: 149 QKGSIVLPEKLRFDFSH 165



 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           ++  G  H+S +  GTH+S+T E     ++SE  I  GIRRI A+T   A
Sbjct: 162 DFSHGNSHNSWIYSGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDSA 211


>gi|210622878|ref|ZP_03293401.1| hypothetical protein CLOHIR_01349 [Clostridium hiranonis DSM 13275]
 gi|210153983|gb|EEA84989.1| hypothetical protein CLOHIR_01349 [Clostridium hiranonis DSM 13275]
          Length = 399

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 174/389 (44%), Gaps = 43/389 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  DQT F+   GGQ  D G   G    +++ D+ +  E   V+H I E     +E  + 
Sbjct: 30  VELDQTAFFPGGGGQFCDKGTLNG----IEVVDMLE--ENGKVYHIIEEN---LSENQVK 80

Query: 573 LTIDYQNRRQLSINHSATHLLHHALST-----ILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ID+  R      H   H+L     T       G H+ ++ S +  +G           
Sbjct: 81  GAIDWDRREDGMHQHFGQHVLSGCFFTKYNRNTCGFHLGEDISTVDIEG---------EF 131

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T   L  +E   ND+I QN+ V   + ++++   +     L     + +R+V +    G 
Sbjct: 132 TDEMLLEVEKMANDVIRQNIHVDIFVPSKDELEDTWTRRKL-PDTAEEIRIVRI----GD 186

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           + ++A CG  H   TGE+ LL I      R   R +E + G+RA  +++ +D  + SL  
Sbjct: 187 LDTNACCG-CHPEYTGELKLLKIKRTEKCRNATR-VEFLAGKRAVDYVLKRDAVMTSLCK 244

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-------DVNFMSHI 800
            L  ++ N+   V+ I E+    ++IH K  L+  + D    ++        D+  +  +
Sbjct: 245 HLSCNEENIEKCVKNIEEKCD--EIIHQKNMLEDELLDYRIKELVEKAELVDDIKLIKAV 302

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             + DS+ L  ++  + +  +  ++ L  +S   + +V+   TED+ D  +  D+ R + 
Sbjct: 303 FKDKDSRYLNKMVKKITENEKMAVMFLNEVSN--RINVVFAYTEDI-DGPSMSDILRSNI 359

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++ G GGG R + AQ GG N  K+D+ I
Sbjct: 360 SIIEGKGGGSR-YSAQGGGVNNGKSDEFI 387


>gi|228945376|ref|ZP_04107731.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814348|gb|EEM60614.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 236

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G  
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGFVFEVEKV-KKEQGEIVHY--IKDGAQ 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S+ L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGSVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|253741622|gb|EES98488.1| Alanyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 969

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 131/278 (47%), Gaps = 15/278 (5%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVH 556
           +EE   G+ + V+ D+T FY  +GGQ  DTG        G  I   + DV++    + VH
Sbjct: 557 MEEKSKGRNL-VILDKTVFYPTSGGQQHDTGVLRFILDNGKMITHDVVDVKRVGHCV-VH 614

Query: 557 HAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                   L T  + V + ID   R QL  +H+A H++H   + +LG HV Q G+  T +
Sbjct: 615 ELDTPINDLITLGTCVSMEIDSARRHQLMCHHTAAHVIHATANKVLGPHVWQAGAKKTTE 674

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYN 673
               D+TH + +T  E ++IE   N +I  N+P+    + + +A      +L   G    
Sbjct: 675 VATLDITHYRSLTFEEERAIEREANRMIRDNVPIRKHQLPKNEAEKKYGFSLYQGGVVPG 734

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             VR V +       H +  C GTH+ +TG+I ++ I+  + I  G+ R+  + G++A  
Sbjct: 735 STVRCVDIVG-----HDTEACCGTHLDNTGKIGMIRIIKSTRISDGVVRLTFVAGEKALD 789

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
               Q E L +      V Q  +V   ++ +   ++L+
Sbjct: 790 FTDTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLE 827



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 136/356 (38%), Gaps = 113/356 (31%)

Query: 10  TFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQK 66
           +F + F +    H ++P   ++        FT +G+  ++    TG+ +P    +   Q 
Sbjct: 94  SFTQSFTRTIPPHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPANPLIQPQL 153

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQ--LAWDLLTKEFD 119
           C+R     NDLD++G + RH++ F MLG   F       YFKE  I+  L W L T   D
Sbjct: 154 CLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSAKYVYFKEEIIRFNLEW-LQTMNID 208

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           LD+  L   V+                                 A  G  GPC E +F  
Sbjct: 209 LDEVTLIADVW---------------------------------AGGGNLGPCVE-YFMH 234

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G                 +E+ N+VFM+F+         LP   +D G+GLER+  +L  
Sbjct: 235 G-----------------LEVGNMVFMEFKAFANGTIEPLPVQVVDVGIGLERIPWLLNR 277

Query: 240 KTNNYDIDLF----KHLIQ----ASEQVTGMKY--------------------------- 264
              +Y I  F    KH+ Q     +E +TG  +                           
Sbjct: 278 SVTSY-ITAFPTALKHMSQLIGITTETITGDVWRRFGRYSCLLNIDEVSDISQVWSLIKE 336

Query: 265 -------EGNNIVNH----RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
                  E  N++       +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 337 RTGLTTEEITNVIEPVRCMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 392


>gi|229172419|ref|ZP_04299978.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus MM3]
 gi|228610890|gb|EEK68153.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus MM3]
          Length = 236

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G K+ V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G L
Sbjct: 22  VEGNKIFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHY--IKDGAL 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGPVKLEVNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKKVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|30261778|ref|NP_844155.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. Ames]
 gi|47527011|ref|YP_018360.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184612|ref|YP_027864.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. Sterne]
 gi|65319055|ref|ZP_00392014.1| COG2872: Predicted metal-dependent hydrolases related to
           alanyl-tRNA synthetase HxxxH domain [Bacillus anthracis
           str. A2012]
 gi|165869526|ref|ZP_02214185.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0488]
 gi|167633249|ref|ZP_02391574.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0442]
 gi|167638818|ref|ZP_02397093.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0193]
 gi|170686273|ref|ZP_02877495.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0465]
 gi|170706590|ref|ZP_02897050.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0389]
 gi|177650513|ref|ZP_02933480.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0174]
 gi|190566371|ref|ZP_03019289.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815454|ref|YP_002815463.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str. CDC
           684]
 gi|229600184|ref|YP_002866165.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0248]
 gi|254683275|ref|ZP_05147136.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723858|ref|ZP_05185644.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A1055]
 gi|254734628|ref|ZP_05192340.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741037|ref|ZP_05198725.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Kruger B]
 gi|254755280|ref|ZP_05207314.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Vollum]
 gi|254759817|ref|ZP_05211841.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Australia 94]
 gi|30256006|gb|AAP25641.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Ames]
 gi|47502159|gb|AAT30835.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178539|gb|AAT53915.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Sterne]
 gi|164714966|gb|EDR20484.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0488]
 gi|167513282|gb|EDR88653.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0193]
 gi|167531287|gb|EDR93965.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0442]
 gi|170128688|gb|EDS97555.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0389]
 gi|170669970|gb|EDT20711.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0465]
 gi|172083657|gb|EDT68717.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0174]
 gi|190562506|gb|EDV16473.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006687|gb|ACP16430.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str. CDC
           684]
 gi|229264592|gb|ACQ46229.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0248]
          Length = 236

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGFVFEVEKV-KKEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|196033490|ref|ZP_03100902.1| alanyl-tRNA synthetase domain protein [Bacillus cereus W]
 gi|195993924|gb|EDX57880.1| alanyl-tRNA synthetase domain protein [Bacillus cereus W]
          Length = 236

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGFVFEVEKV-KKEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVQNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|196045110|ref|ZP_03112343.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB108]
 gi|196024112|gb|EDX62786.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB108]
          Length = 236

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R +L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHKLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|242059365|ref|XP_002458828.1| hypothetical protein SORBIDRAFT_03g041025 [Sorghum bicolor]
 gi|241930803|gb|EES03948.1| hypothetical protein SORBIDRAFT_03g041025 [Sorghum bicolor]
          Length = 439

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 166/383 (43%), Gaps = 37/383 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F  + +  G++ LPS  ++P  D    F +  +  F   F G     +    
Sbjct: 13  DAAQVRELFFSYSRGRGYKFLPSGPVLPVGDSKGPF-HGALDHFNQAFLGPAPWSHGHAG 71

Query: 63  TV--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF-- 118
           +     C+       D  +      HH+  ++  N  F  +    + Q   +  +KE   
Sbjct: 72  SAFSLHCINMSDMLVDFSDPS----HHSLMDIFCNCFFEFFCLADS-QCLSEYFSKEMVT 126

Query: 119 -DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIF 176
                 R+Y+T Y +D+E+ ++  K   LS  +++  T   N++      GPCGPC++IF
Sbjct: 127 CKFSAGRIYVTCYADDDESREICMKF--LSKKQLLNFTCETNYYIGKNGCGPCGPCTKIF 184

Query: 177 FDQGECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +     +P       G    + +GE YIE+ N+V ++ ++++     ++ K ++ +G+  
Sbjct: 185 Y-----LPSDNRKYHGHSAITIDGETYIELANIVSVEVDKEDDMFWPLVIKHAV-SGINY 238

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVN------HRVIVDHLRS 281
           E + T+LQ K + YD DLF  + +A  +    K   Y GN  V       +R+  DH+R 
Sbjct: 239 ECLVTLLQHKESFYDTDLFTKMFEAIRKYACNKVQPYSGNASVTCDVDAAYRLFADHVRI 298

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            S   A        GR Y L  I RRA+    + L         LL      M   YP+L
Sbjct: 299 ISCASAPQSQLGERGREYFLNFIDRRAIESGHQKLKIEAHFYPELLKVAVIMMDPIYPDL 358

Query: 341 IQAKLLIEETLRSEDERFGKTLD 363
              K  IEE L++E   + K LD
Sbjct: 359 -NIKDRIEEILKTEMLIYKKALD 380


>gi|196038963|ref|ZP_03106270.1| alanyl-tRNA synthetase domain protein [Bacillus cereus NVH0597-99]
 gi|196030108|gb|EDX68708.1| alanyl-tRNA synthetase domain protein [Bacillus cereus NVH0597-99]
          Length = 236

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 26/223 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVERGILRTE 568
           V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+ G ++  
Sbjct: 27  VFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKV-KKEQGEIVHYIKDGAQVKLGPVK-- 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
               L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    + ++
Sbjct: 84  ----LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQELS 137

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVE 682
           S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V++E
Sbjct: 138 SVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQEIRIVTIE 195

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 196 NLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|229155344|ref|ZP_04283454.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 4342]
 gi|228628059|gb|EEK84776.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 4342]
          Length = 236

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV     +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKV--FIKETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|229090738|ref|ZP_04221971.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock3-42]
 gi|300117305|ref|ZP_07055095.1| alanine--tRNA ligase [Bacillus cereus SJ1]
 gi|228692680|gb|EEL46406.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock3-42]
 gi|298725140|gb|EFI65792.1| alanine--tRNA ligase [Bacillus cereus SJ1]
          Length = 236

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|115704026|ref|XP_001203291.1| PREDICTED: similar to Alanyl-tRNA synthetase, mitochondrial
           precursor, putative, expressed, partial
           [Strongylocentrotus purpuratus]
 gi|115755043|ref|XP_796369.2| PREDICTED: similar to Alanyl-tRNA synthetase, mitochondrial
           precursor, putative, expressed, partial
           [Strongylocentrotus purpuratus]
          Length = 111

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 4/98 (4%)

Query: 159 NFWSMAETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF 217
           NFW M E  PCGPC EI FD+ G+     +   + +    +EIWNLVF QF +++     
Sbjct: 14  NFWEMGEV-PCGPCIEIHFDRIGDRDARAM--VNMDVPDVLEIWNLVFTQFNRESDGTLN 70

Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           +LPK  +DTGMGLER+A+V+Q +++NYD DLF  +  A
Sbjct: 71  VLPKKCVDTGMGLERIASVIQGRSSNYDTDLFMPIFDA 108


>gi|52143685|ref|YP_083143.1| alanine--tRNA ligase [Bacillus cereus E33L]
 gi|51977154|gb|AAU18704.1| possible alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           cereus E33L]
          Length = 236

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGFIVQDGSVFEVEKV-KKEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|228984858|ref|ZP_04145028.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774808|gb|EEM23204.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 236

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTVINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|150391131|ref|YP_001321180.1| threonyl/alanyl tRNA synthetase, SAD [Alkaliphilus metalliredigens
           QYMF]
 gi|149950993|gb|ABR49521.1| Threonyl/alanyl tRNA synthetase, SAD [Alkaliphilus metalliredigens
           QYMF]
          Length = 403

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 175/420 (41%), Gaps = 62/420 (14%)

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
            +SI+  + ++G+            VV D+T FY E GGQ  DTG    D I +      
Sbjct: 17  TTSIINTVEKEGQ----------YHVVLDETYFYPEGGGQPSDTGTI--DSIPVIFVYED 64

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST-------- 599
           +  E I+    ++E+   + +  +  +ID+ NRR    +H   HL  H LS         
Sbjct: 65  ETQETIY---HVLEKKPNKLK-RVTCSIDW-NRR---YDHMQQHLGQHLLSASIFELFNG 116

Query: 600 -ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G H+S++   I  D         K +    +   E  VN  I  +  V   +     
Sbjct: 117 VTVGFHLSEHYCTIDID---------KAMNETGILEAEKAVNQSILDSRKV-QGLFPTYT 166

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
            +       +  +   ++R+V +E    G+ ++  CG TH  ST E+ L+ I      + 
Sbjct: 167 ELKKLPLRKMPPQTTGQIRIVQIE----GIDATPCCG-THPHSTLEVQLMKITKWEKYKG 221

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G R IE + G RA      + E +K  A FL  ++  ++ R  ++ EE R  Q    +R 
Sbjct: 222 GTR-IEFLCGSRAIRDYAFKHETIKKTAQFLSCNENTLLERTNQLLEELR--QSNADRRS 278

Query: 779 LQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           LQ  V D        S   + D   +  I +  + K++ S+   L    +  +I+L GI 
Sbjct: 279 LQAQVTDYEVKDIFTSAESVGDNKIIKSIFNNAEMKQINSLASKLVSFPR--VIVLFGIK 336

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E KA +L + +E+L      + +  L   A  L  G GGG    AQ GG N    D AI
Sbjct: 337 SEDKAQLLFMRSEEL----TTISMKTLLRDAITLVDGKGGGSDLSAQGGGKNKGNLDSAI 392


>gi|226324688|ref|ZP_03800206.1| hypothetical protein COPCOM_02474 [Coprococcus comes ATCC 27758]
 gi|225207136|gb|EEG89490.1| hypothetical protein COPCOM_02474 [Coprococcus comes ATCC 27758]
          Length = 382

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 165/376 (43%), Gaps = 34/376 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E V  +T F+ E GGQ  DTG  + DGIR  + DVQ+K E IF H+     G L    ++
Sbjct: 30  EAVLSRTAFFPEGGGQAADTG--VIDGIR--VYDVQEKGEQIF-HYL---EGELEEGKTV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      HS  H++   +    G      G  +  +    D+  S P+T  E
Sbjct: 82  TGQIDWDKRFSRMQQHSGEHIVSGIVHARFG--YDNVGFHLNDELCTLDL--SGPLTKEE 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ +E+  N+ +  N+PV     ++E        + +  + + +VR+V++   D      
Sbjct: 138 LREVENAANEAVFANVPVQISYPSKEKLKTLDYRSKI--EIDGQVRIVTIPGYD-----V 190

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             C   HV  TGEI L+ +V   + + GI RI  + G+RA      ++E +K++   L  
Sbjct: 191 CACCAPHVYFTGEIGLIKLVQSQNYKGGI-RITMLCGRRALKDYQQKEESVKAIMGSLSA 249

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
            +  +   VE + EE  +L+   A+ + Q+       +            S++   E + 
Sbjct: 250 KEELIAEAVERVKEECTQLKSELAETRYQILEAQAEKNSGGTEKRSVFFDSKLSGNEPRE 309

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---GGGG 868
           +M+ + KK      +  G  +     V+   TED+          R  +K+L     G G
Sbjct: 310 LMNLVLKKGTEVCAVFAGNEESGYRYVIGSETEDV----------RPYSKILKEQFDGRG 359

Query: 869 GGRPHMAQSGGPNGNK 884
           GG+P M Q G  NG++
Sbjct: 360 GGKPVMVQ-GSVNGSE 374


>gi|255526550|ref|ZP_05393458.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|296187528|ref|ZP_06855923.1| DHHA1 domain protein [Clostridium carboxidivorans P7]
 gi|255509735|gb|EET86067.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|296048050|gb|EFG87489.1| DHHA1 domain protein [Clostridium carboxidivorans P7]
          Length = 391

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 172/394 (43%), Gaps = 46/394 (11%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +I+EE     KV VV D+TPFY E GGQ  DTG    DGI+  ++ V +K E I+ H   
Sbjct: 21  DIIEE---DGKVLVVLDKTPFYPEGGGQPSDTGTI--DGIK--VSYVSEKGEIIYHHMDK 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +  +ID++ R      HS  HLL  A+  + G   +  G  +  + +  
Sbjct: 74  APEN-----KKVKCSIDFERRFDHMQQHSGEHLLSGAIYKLYGG--NNKGFHLGEEYVTV 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+    P T   +K +ED VN+ I  N    T I+ +++     A   +    ++ +R+V
Sbjct: 127 DIDID-PFTEDMVKKVEDEVNEYIYANRSFDTYIVTKDEVDKVPARKKINV--DEDIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
             +  D        C GTHV +T E+ ++ I+     + G+ RI    G+RA      + 
Sbjct: 184 EAKDMD-----CCPCCGTHVKTTSEVGIVKILKAERYK-GMTRIYIKCGKRAFKDFQVKH 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMS 798
           + + SL   L V +  ++ RV + +EE   L+   ++ K  +  +E  S  K A    +S
Sbjct: 238 DIITSLNKVLSVDENGILDRVNKQFEEIESLKRESSRSKSTIAGIEAESIIKNAKSKLIS 297

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
               + + ++++ +   L+ K   G I++    ++KK   L           N  D+   
Sbjct: 298 IQFEDKNFEDIQLIGSILENK---GYIVIFASLEDKKILFL-----------NNTDIDIS 343

Query: 859 SAKVLG------GGGGGGRPHMAQSGGPNGNKAD 886
             K+         G GGG+   AQ  G   NK D
Sbjct: 344 CGKLFKEHIREFNGKGGGKDKRAQ--GTFDNKED 375


>gi|313112949|ref|ZP_07798593.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624714|gb|EFQ08025.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 22/267 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHH--AIVERGILRTEM 569
           +  D T FY E GGQ  D G   + DG  L +TDV +  +GI  H   A+ E  +  T +
Sbjct: 35  IALDGTVFYPEGGGQPADRGTLTLPDGTTLNVTDVHEH-DGILWHSVDALPESAVPGTAV 93

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S    ID++ R      H+  H+L   L  + G+     G  I  + +R D   S PI++
Sbjct: 94  SGC--IDWEWRFDKMQQHTGEHILSGILHQMFGAE--NVGFHIGSEAVRMDT--SVPISA 147

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK--YNDRVRVVSVEYEDGG 687
             L++ E   N I+ Q++PV+     RE+     AA +  +K     +VR+V++   D  
Sbjct: 148 EGLQAAELAANRIVWQDVPVLVSYPTREEL----AALVYRSKKEIEGQVRIVTIPGAD-- 201

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C GTH  +TG++  + I++  + + G+ R+  + GQRA        ++   + +
Sbjct: 202 ---VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCGQRALLAAQAMRQRQAEIGA 257

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            L          V  I++EY  L+  H
Sbjct: 258 LLSAKADQTAVAVHRIYDEYTALKFTH 284


>gi|51102326|gb|AAT95876.1| alanyl-tRNA synthetase [Entamoeba invadens]
          Length = 607

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 10/180 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-----IVERGILRT 567
           V+ DQ+ FY   GGQ  DTG    DG    +T V+K  + I  H +      VE  I +T
Sbjct: 430 VILDQSAFYPIGGGQDNDTGKMEIDGKMYDVTYVEKVGKCILHHLSGNFAEKVETLIGKT 489

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
               V   D   R QL  +H+ATH++H A   +LG HV QNG+  T      D+TH   I
Sbjct: 490 ATGYV---DDARRNQLRAHHTATHVIHQAAHQVLGPHVWQNGAKKTVKEAHLDITHFASI 546

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYED 685
           T  E   IE   N+I+ +NL V   ++++EDA      +L   G    + VR+V ++  D
Sbjct: 547 TREEENQIEKLANEIVRKNLKVNKFVLSKEDAERKYGFSLYQGGVVAGNTVRIVDIDNFD 606



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 116/322 (36%), Gaps = 105/322 (32%)

Query: 51  TGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKER 105
           TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G   F       +FKE 
Sbjct: 4   TGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQVFNSPQKYVFFKEE 59

Query: 106 AIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
            +      LTKE ++D                                IT  ++ W    
Sbjct: 60  CVDYNLRWLTKELEIDPD-----------------------------DITLIEDVWCGG- 89

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFILPKMS 223
            G  GP  E+F                   R +E+ N+VF Q++  +  K E   L    
Sbjct: 90  -GNLGPSIEMFV------------------RGLEVGNMVFTQYKILDFVKGEFEPLKHQV 130

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------- 269
           ID G+GLER+  ++   + +Y ++ F   ++   +   +  E + I              
Sbjct: 131 IDVGIGLERIPWLVNGTSTSY-LEAFPCAVKYLREKLNVTLESDVITKFAPYCCLLNLDE 189

Query: 270 ----------------VNHR--------------VIVDHLRSSSFLIADGILPANEGRGY 299
                           V +R              ++ DH RS    I DG LP+  G G 
Sbjct: 190 CDDVNKAWGEIAKECGVENREILENAIKPARDLYIVADHSRSLLIAIYDGALPSAVGGGA 249

Query: 300 VLRRIMRRAMCYARLLGYTEPL 321
            LR I+RR     +  G+ E L
Sbjct: 250 NLRNIVRRLFSVLKNNGWWEML 271


>gi|315231455|ref|YP_004071891.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184483|gb|ADT84668.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 408

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 30/378 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           + G KV +  D+T FY E GGQ  D G   GDG  +++  V  K E    H   ++    
Sbjct: 24  IRGNKVRLNLDRTIFYPEGGGQPSDKGIIRGDGFEIRVEKVYGKDE--IWHEGTLKGREP 81

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    + L +D++ R +    H+  H+L   L  +  S+ +  G  I  +  + ++  + 
Sbjct: 82  KPGEEVELELDWEWRYENMKQHTGQHILSAVLKDLYDSNTT--GFQIFENYNKIEINFNG 139

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAAALLGTKYNDRVRVVSVEYE 684
            +T   + + E   N+I++++LPV     N   + + +     L  K    +R+VS+   
Sbjct: 140 KLTWEHILNAEIRANEIVSKDLPVEIEFYNELPEDLRNQLRKDLSDKIKPPIRIVSI--- 196

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             GV     CGGTHV ST E+  + +V+       I RIE + G RA  +L   DE L+ 
Sbjct: 197 -PGVDVIP-CGGTHVKSTREVGFIKVVNFYKKSKNIWRIEFVCGNRALRYL---DELLED 251

Query: 745 -LASFLKVSQGN--VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-------HKIADV 794
              S  ++   N  ++ RV E+  E  KL+    K+ L+L + +           ++  +
Sbjct: 252 YWESLDEMPNKNRPLIKRVRELKNEIVKLE--EEKKALRLELWEWKAKALLRGSEEVKGI 309

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----ISKEKKASVLIVVTEDLLDRF 850
             +S  + E+D K+ ++ +  L  K  + I + VG    I  + +    + + E L +  
Sbjct: 310 KIVS-TVEELDMKDAQAFVVYLVDKNPNTIALFVGRNYVIFAKNRGVEGVSMKELLREVI 368

Query: 851 NAVDLARLSAKVLGGGGG 868
                    ++VL  GGG
Sbjct: 369 KETGGGGGGSEVLAKGGG 386


>gi|47565442|ref|ZP_00236483.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557432|gb|EAL15759.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 236

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  + K  +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKI-KNEQGEIVHYIKDGAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|218506791|ref|ZP_03504669.1| alanyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 119

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 71/98 (72%)

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+G+S++ KAS ++ VT DL
Sbjct: 8   AVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLIGVSEDGKASAVVAVTPDL 67

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 68  VDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 105


>gi|123455522|ref|XP_001315505.1| alanyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
 gi|121898183|gb|EAY03282.1| alanyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
          Length = 1009

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEM 569
           ++VFD+T  Y   GGQ  D G   IGD +  ++ +++K +   IF     V+   + TE 
Sbjct: 579 KLVFDRTILYPTQGGQEHDDGKIKIGDKL-YEVQNIEKVRKVAIFTVDGDVDEKYVNTEC 637

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   +D + R  +   HSATHL+  A   +LG HV QNG+  T      D+TH    T 
Sbjct: 638 TMY--VDPEVREIMRTQHSATHLVAAAARRVLGPHVWQNGAKKTKVESHIDLTHYSLPTF 695

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGG 687
            ++  I+   N++I  N  V   +  R++A       L   G    + +RVV +    GG
Sbjct: 696 EQVLEIQRVANELIMTNAAVKKCVYTRKEAEDKWGFVLYQGGAIPGNDIRVVDI----GG 751

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           + + A C GTHVS   EI  + I+  +S++ G+ R   + G+ A
Sbjct: 752 IDTEACC-GTHVSHLSEIGQIRILGVNSVQDGVFRCTFVAGKLA 794



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 120/326 (36%), Gaps = 104/326 (31%)

Query: 38  FTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           F  +G+  F+    TG+ +P    +   Q C+R     NDLDN+G T RH++ F MLG  
Sbjct: 129 FVAAGIYCFQPFCVTGESEPPANPLCACQFCLR----FNDLDNIGITGRHYSGFNMLGIQ 184

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK----------ISGL 146
            F                      D+ R     + E EE F  WK              L
Sbjct: 185 VFN-------------------HADRARKEPNQFGETEEIF--WKDTLIANNYRWCTETL 223

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206
             D   ++T  ++ W  A  G CG C E F+       GGL           EI N+VF 
Sbjct: 224 HLDP-KKLTFIEDVW--AGGGNCGACVEYFY-------GGL-----------EIGNMVFT 262

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---- 262
           ++    + E   +    +D G+GLER+  ++     +Y +D+F +++    Q   +    
Sbjct: 263 EYTVSPQGEFSPISTKVVDVGIGLERIPWLVNGGWTSY-LDVFDYILPVLSQKLDVPIDT 321

Query: 263 ----KYEGNNIV-----NHRV---------------------------------IVDHLR 280
               K+  N  +     N  +                                 I DH R
Sbjct: 322 PEFRKFAPNTALFDADENQHIEQTWAKVGEEMGLDKAGLAKFRQHLRQFSDLVRICDHTR 381

Query: 281 SSSFLIADGILPANEGRGYVLRRIMR 306
           +  + I DG LP+N G    +R I+R
Sbjct: 382 TVLYAIEDGALPSNNGGAANIRDILR 407


>gi|51102334|gb|AAT95880.1| alanyl-tRNA synthetase [Trichomonas vaginalis]
          Length = 1003

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 12/224 (5%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEM 569
           ++VFD+T  Y   GGQ  D G   IGD +  ++ +++K +   IF     V+   + TE 
Sbjct: 573 KLVFDRTILYPTQGGQEHDDGKIKIGDKL-YEVQNIEKVRKVAIFTVDGDVDEKYVNTEC 631

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   +D + R  +   HSATHL+  A   +LG HV QNG+  T      D+TH    T 
Sbjct: 632 TMY--VDPEVREIMRTQHSATHLVAAAARRVLGPHVWQNGAKKTKVESHIDLTHYSLPTF 689

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGG 687
            ++  I+   N++I  N  V   +  R++A       L   G    + +RVV +    GG
Sbjct: 690 EQVLEIQRVANELIMTNAAVKKCVYTRKEAEDKWGFVLYQGGAIPGNDIRVVDI----GG 745

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           + + A C GTHVS   EI  + I+  +S++ G+ R   + G+ A
Sbjct: 746 IDTEACC-GTHVSHLSEIGQIRILGVNSVQDGVFRCTFVAGKLA 788



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 120/326 (36%), Gaps = 104/326 (31%)

Query: 38  FTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           F  +G+  F+    TG+ +P    +   Q C+R     NDLDN+G T RH++ F MLG  
Sbjct: 123 FVAAGIYCFQPFCVTGESEPPANPLCACQFCLR----FNDLDNIGITGRHYSGFNMLGIQ 178

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK----------ISGL 146
            F                      D+ R     + E EE F  WK              L
Sbjct: 179 VFN-------------------HADRARKEPNQFGETEEIF--WKDTLIANNYRWCTETL 217

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206
             D   ++T  ++ W  A  G CG C E F+       GGL           EI N+VF 
Sbjct: 218 HLDP-KKLTFIEDVW--AGGGNCGACVEYFY-------GGL-----------EIGNMVFT 256

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---- 262
           ++    + E   +    +D G+GLER+  ++     +Y +D+F +++    Q   +    
Sbjct: 257 EYTVSPQGEFSPISTKVVDVGIGLERIPWLVNGGWTSY-LDVFDYILPVLSQKLDVPIDT 315

Query: 263 ----KYEGNNIV-----NHRV---------------------------------IVDHLR 280
               K+  N  +     N  +                                 I DH R
Sbjct: 316 PEFRKFAPNTALFDADENQHIEQTWAKVGEEMGLDKAGLAKFRQHLRQFSDLVRICDHTR 375

Query: 281 SSSFLIADGILPANEGRGYVLRRIMR 306
           +  + I DG LP+N G    +R I+R
Sbjct: 376 TVLYAIEDGALPSNNGGAANIRDILR 401


>gi|51102328|gb|AAT95877.1| alanyl-tRNA synthetase [Entamoeba moshkovskii]
          Length = 606

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 19/180 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--- 569
           V+  ++ FY   GGQ  DTG    DGI   +T V+K  + I +HH       L T++   
Sbjct: 430 VILKESAFYPIGGGQDNDTGKMKIDGITYDVTYVEKVGKCI-LHH-------LDTDLKNW 481

Query: 570 ------SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 S+   ID Q R QL  +H+ATH++H A   +LG H+ QNG+  T +    D+TH
Sbjct: 482 NDLKGKSVTAYIDDQRRNQLRSHHTATHIIHQAAHQVLGPHIWQNGAKKTVEEAHLDITH 541

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSV 681
              IT  E   IE   N+++ +NL +   ++++E+A      +L   G    + VR+V +
Sbjct: 542 FASITREEENEIEKLANEMVRKNLKINKFVLSKEEAEKKYGFSLYQGGVVAGNTVRIVDI 601



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 113/321 (35%), Gaps = 103/321 (32%)

Query: 51  TGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKER 105
           TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G   F       YFKE 
Sbjct: 4   TGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQVFNSPQKYVYFKEE 59

Query: 106 AIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
            +      LTKE +++                             +  IT  ++ W    
Sbjct: 60  CVDYNLRWLTKELEIN-----------------------------VDDITLIEDVWCGG- 89

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFILPKMS 223
            G  GP  E+F                   + +E+ N+VF Q++  +  K E   L    
Sbjct: 90  -GNLGPSIEMFV------------------KGLEVGNMVFTQYKILDFVKGEFEPLKHQV 130

Query: 224 IDTGMGLERMATVLQEKTNNY----------------------------------DIDLF 249
           ID G+GLER+  ++     +Y                                  ++D  
Sbjct: 131 IDVGIGLERIPWLINGTPTSYLEAFPGAVKYLQSKLEVTLESEVISKFAPFCCLLNLDEC 190

Query: 250 KHLIQASEQVTG-MKYEGNNIVNHRV--------IVDHLRSSSFLIADGILPANEGRGYV 300
           K + +A   +      E   I+   +        I DH R+    I DG LP+  G G  
Sbjct: 191 KDVNKAWADIAKECGVENREILQTAIQPTRDLYIIADHSRTMLIAIYDGALPSAVGGGAN 250

Query: 301 LRRIMRRAMCYARLLGYTEPL 321
           LR I+RR        G+ E L
Sbjct: 251 LRNIVRRMFSILHKNGWWEKL 271


>gi|32453275|gb|AAP82770.1| alanyl tRNA synthetase [Thermocrinis ruber DSM 12173]
          Length = 55

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          FTN+GMVPFKN+F G EK  Y    + QKC+R  GKHNDL+ VG T+RHHTFFEM
Sbjct: 1  FTNAGMVPFKNVFLGLEKRPYTRAVSCQKCLRVSGKHNDLEQVGYTSRHHTFFEM 55


>gi|118477205|ref|YP_894356.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Bacillus thuringiensis str. Al Hakam]
 gi|225863631|ref|YP_002749009.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB102]
 gi|229183965|ref|ZP_04311180.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BGSC 6E1]
 gi|118416430|gb|ABK84849.1| Ala-tRNA(Pro) hydrolase [Bacillus thuringiensis str. Al Hakam]
 gi|225787536|gb|ACO27753.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB102]
 gi|228599490|gb|EEK57095.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BGSC 6E1]
          Length = 236

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G L
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGKIVHY--IKDGAL 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|49480535|ref|YP_035892.1| alanine--tRNA ligase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332091|gb|AAT62737.1| possible alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 236

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 109/226 (48%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G L
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHY--IKDGAL 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGPVKLEVNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPATIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|152002514|dbj|BAF73538.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 321

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 149/338 (44%), Gaps = 66/338 (19%)

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    ++  DA 
Sbjct: 5   LGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQLSIPDAQ 64

Query: 661 ASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              A  L      KY D+VR+VS++       S  LCGGTH ++T ++    I+S  SI 
Sbjct: 65  KKYATLLEKNQKAKYKDKVRIVSID-----TFSVDLCGGTHATNTKDLEHFTILSCESIS 119

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GI RIEA+     +          +SL + L   Q +    + ++ ++ + LQ     +
Sbjct: 120 SGIYRIEAVCNNNCQ----------ESLNAKLVPYQND----LHQLTQKAKSLQT----Q 161

Query: 778 KLQLNVEDLS--CHKIADV-NFMSHIISEVDSKEL--KSVMDALQKKI---QSGII---- 825
            L  +V++         D+ N+  HI ++  +  L  K V++  QKK+   +S  +    
Sbjct: 162 NLIFDVKNFPPITQSYQDILNYQKHIKAQQQALVLFEKKVLEYHQKKMVQAESNFLPPQI 221

Query: 826 ---MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS----------------------- 859
              M++ I +EK   VL      + D+++ +++  LS                       
Sbjct: 222 TKKMMLTIEEEKPLEVLKFFINHIFDKYH-LEVLFLSYVQPEKIVFLCKSKTLHAGNLIK 280

Query: 860 -AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A  L  G GGG   +AQ G       +Q +  V + L
Sbjct: 281 EAVSLVCGSGGGNASLAQGGTKKTKNLEQVLNFVKTKL 318


>gi|295101312|emb|CBK98857.1| Alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 394

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 113/269 (42%), Gaps = 26/269 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +  D T FY E GGQ  D G   + DG  L +TDV +   GI  H         +   ++
Sbjct: 35  IALDGTVFYPEGGGQPADRGTLTLADGTVLHVTDVHET-NGIIWHTVDALPETTQPGAAV 93

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             TID++ R      H+  H+L   L  + G+     G  I  D +R D   S PI++  
Sbjct: 94  TGTIDWEWRFDKMQQHTGEHILSGILHQMFGAE--NVGFHIGSDAVRMDT--SVPISAEG 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVSVEYED 685
           L+  E   N II +N+PV+      E+        L    Y  +      VR+V++   D
Sbjct: 150 LREAELAANRIIWENVPVLITYPTPEE--------LAALTYRSKKEIAGQVRIVTIPGAD 201

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   C GTH ++TG++  + I++  + + G+ R+  + G RA         +   +
Sbjct: 202 -----VCACCGTHTAATGQVGQIKILTSENYKGGV-RLSVVCGGRALREAQAMRSRQADI 255

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + L          V  +++EY  L+  H
Sbjct: 256 GALLSAKADQTAVAVHRVYDEYTALKFAH 284


>gi|259015947|gb|ACV89256.1| alanyl-tRNA synthetase [Strangalia bicolor]
          Length = 121

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 28/132 (21%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSA 148
           FFEM+ N+S G Y K      AW+ LT+   L   RLY+T +  D+         SGL  
Sbjct: 1   FFEMMXNWSLGDYVKNEVCTWAWEYLTERLKLPADRLYVTYFGGDQS--------SGLEP 52

Query: 149 D---------------KIIRITTNDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSS 191
           D                +I  +  DNFW M ETGPCGPCSE+ FD+  G  +P  +   +
Sbjct: 53  DYECKQVKYQIISKPSHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGGREVPELV---N 109

Query: 192 EEGERYIEIWNL 203
            +    +EIWNL
Sbjct: 110 NDDPDVLEIWNL 121


>gi|260881608|ref|ZP_05404819.2| putative alanyl-tRNA synthetase domain-containing protein 1
           [Mitsuokella multacida DSM 20544]
 gi|260848372|gb|EEX68379.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Mitsuokella multacida DSM 20544]
          Length = 390

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 161/378 (42%), Gaps = 42/378 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQT F++E GGQL DTG     G  L +T V +KA  IF  H   E   L     + 
Sbjct: 21  VVLDQTVFFSEGGGQLSDTGTLTAAGKVLAVTHVHEKAGEIF--HETKEP--LEPGTKVQ 76

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+Q R      H   H+L +A   + G+H    G  ++ D +  D+   K +   + 
Sbjct: 77  AKLDWQVRFDHMQQHCGEHMLSYAFYKLFGAH--NVGFHMSADMVGIDL--DKEVDWQQA 132

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR----VRVVSVEYEDGGV 688
              E   N  I ++ P+ T+++  E+     AA +   K+ND+    +R+VSVE  D   
Sbjct: 133 LQAERFTNRQIQEDRPITTKLVPAEE-----AAKMNLRKFNDKLTGILRIVSVEGSD--- 184

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             S  C GTH +S+G + L+ I      + G  R+  + G+ A   +          ++ 
Sbjct: 185 --SCTCCGTHPTSSGMVGLVKIFKVEKHKEG-SRVSFLCGREALERVEQYMLAALDASNL 241

Query: 749 LKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVD 805
           L + +  +   V  + +E ++L  +L     K L+  + ++  H  A         ++  
Sbjct: 242 LSIKETELPDGVARLQQEKKELSERLTECTGKLLEYRIAEMQAHPTA---------TKAG 292

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL-- 863
            K+   +   +  K    +   +G   E  +++     E L   F A D A LS + +  
Sbjct: 293 HKKFVFLEPDMMPKEAKALAKRLGEIPESFSAIFYRNGERLNYMFLATDGAELSCQQVIR 352

Query: 864 -----GGGGGGGRPHMAQ 876
                 GG GGGRP   Q
Sbjct: 353 TVNEAFGGRGGGRPESCQ 370


>gi|183011894|gb|ACC37876.1| alanyl-tRNA synthetase [Archisepsis priapus]
          Length = 112

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 14/111 (12%)

Query: 111 WDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWS 162
           W+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW 
Sbjct: 1   WEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQMWTDL-GLKPEHILPGSMKDNFWE 59

Query: 163 MAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           M ETGPCGPCSE+ FD+  G  +P  +   + +    +EIWNLVF+Q+ ++
Sbjct: 60  MGETGPCGPCSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRE 107


>gi|225454668|ref|XP_002269399.1| PREDICTED: similar to ALATS (ALANYL-TRNA SYNTHETASE); ATP binding /
           alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and
           related compounds / nucleic acid binding [Vitis
           vinifera]
          Length = 532

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 68/258 (26%)

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  FN  ++E R R+R           +K     K K G           G+  M  D
Sbjct: 9   VDVTGFNITMDEARERSR---------NAQK-----KGKAG-----------GAIVMDAD 43

Query: 473 RKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 K  +  T+ +S         S++KAI    E +E A +G +V ++ + T FY E
Sbjct: 44  ATATLHKMGVAATDDISKFTWFEDHESVIKAIYTGTEFLESAAAGDEVGIILETTSFYTE 103

Query: 524 AGGQLG-----------------------------DTGCAIGDGIRLQITDVQKKAEGIF 554
            GGQ                               DTG   G     Q+++VQ    G F
Sbjct: 104 KGGQFDPVESAPEVPKLDTLTVRLSSGSILMDLIFDTGSLEGSCGSFQVSNVQ--IYGGF 161

Query: 555 VHH---AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           V H      E G       ++  +DY  R+ ++ NH+ TH+L+ A+  +LG+HV Q GS 
Sbjct: 162 VLHIGSVTGEIGRFSVGDKVICKVDYDRRKLIAPNHTYTHMLNFAMREVLGNHVDQKGSI 221

Query: 612 ITPDGLRFDVTHSKPITS 629
           + P+ LRFD +H   I++
Sbjct: 222 VLPEKLRFDFSHGTHISN 239


>gi|218679049|ref|ZP_03526946.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 79

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 61/74 (82%)

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I SGI+ L+G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GG
Sbjct: 1   IGSGIVTLIGVSEDGKASAVVAVTPDLVDRFSAVDLVRIASAALGGKGGGGRPDMAQAGG 60

Query: 880 PNGNKADQAIAGVA 893
           P+G+KAD+AI  VA
Sbjct: 61  PDGSKADEAIEAVA 74


>gi|206970665|ref|ZP_03231617.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH1134]
 gi|206734301|gb|EDZ51471.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH1134]
          Length = 236

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMCHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|218231311|ref|YP_002366458.1| alanyl-tRNA synthetase domain protein [Bacillus cereus B4264]
 gi|218159268|gb|ACK59260.1| alanyl-tRNA synthetase domain protein [Bacillus cereus B4264]
          Length = 236

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++ EM      +++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVKLEM------NWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|42780865|ref|NP_978112.1| alanyl-tRNA synthetase domain-containing protein [Bacillus cereus
           ATCC 10987]
 gi|42736786|gb|AAS40720.1| alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10987]
          Length = 236

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G  
Sbjct: 22  VEGNKVYV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHY--IKDGAQ 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VNLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTNEIGTLVIDKVKSKGKQNRRFEV 233


>gi|166031100|ref|ZP_02233929.1| hypothetical protein DORFOR_00785 [Dorea formicigenerans ATCC
           27755]
 gi|166028947|gb|EDR47704.1| hypothetical protein DORFOR_00785 [Dorea formicigenerans ATCC
           27755]
          Length = 380

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 174/397 (43%), Gaps = 64/397 (16%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +++     G+  +VV D+T F+ E GGQ  DTG   G    + + D Q+K +GI  H+
Sbjct: 16  EAQVISCEPEGEGYKVVLDKTVFFPEGGGQYADTGILGG----VHVLDAQEK-DGIIYHY 70

Query: 558 ---AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNG 609
              A+    I++ E      ID++ R +    HS  H++   +        +G H+  + 
Sbjct: 71  TDGALTPGEIVKGE------IDWEKRFESMQQHSGEHIISGIVHGRFGYNNVGFHLGADY 124

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE---DAIASGAAA 666
             +  DG         PIT  +LK IE+  N I+ +NL +      +E   D        
Sbjct: 125 CTMDFDG---------PITKEQLKEIEEEANRIVYKNLNIEILYPTKEELKDLTYRSKIE 175

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + G     +VR+V++     GV   A C   HV  TGEI  + +V   S + G  RI  +
Sbjct: 176 IEG-----QVRIVNIP----GVDICACC-APHVDRTGEIGNIKLVDMVSYKGG-ERITML 224

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +G RA +    ++E +K +++ L      V   VE++ EE   L     K ++    + L
Sbjct: 225 SGSRALTDHQQKEESVKKISALLCAKDTEVAEAVEKLKEEQLDL-----KNQVSALKQKL 279

Query: 787 SCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             ++  +++    ++    SE+   E + +M+ L ++      +  G  +E    V+   
Sbjct: 280 LAYQAKEIDVTPELVKVFDSELSGNEPRELMNILLERGAKICAIFAGNDEEGYRYVIGSH 339

Query: 843 TEDLLDRFNAVDLARLSAKVLG---GGGGGGRPHMAQ 876
           +ED+          R+ +K L     G GGG+P M Q
Sbjct: 340 SEDV----------RVISKKLNEAFQGRGGGKPQMVQ 366


>gi|206974976|ref|ZP_03235891.1| alanyl-tRNA synthetase domain protein [Bacillus cereus H3081.97]
 gi|217959256|ref|YP_002337804.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH187]
 gi|229138474|ref|ZP_04267063.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST26]
 gi|206746995|gb|EDZ58387.1| alanyl-tRNA synthetase domain protein [Bacillus cereus H3081.97]
 gi|217066743|gb|ACJ80993.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH187]
 gi|228645011|gb|EEL01254.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST26]
          Length = 236

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 26/232 (11%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AI 559
           E +  ++ +V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A 
Sbjct: 18  EVIKVEENKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVQKV-KKEQGEIVHYIKDGAQ 76

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V+ G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R 
Sbjct: 77  VKLGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARI 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------ 673
           D    + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N      
Sbjct: 129 DFNELQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTI 186

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 187 QEIRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|229144386|ref|ZP_04272791.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST24]
 gi|228639017|gb|EEK95442.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST24]
          Length = 236

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 111/229 (48%), Gaps = 28/229 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPAGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++ EM      +++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVKLEM------NWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSMEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|229195986|ref|ZP_04322738.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1293]
 gi|228587368|gb|EEK45434.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1293]
          Length = 236

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 26/232 (11%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AI 559
           E +  ++ +V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A 
Sbjct: 18  EVIKVEENKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVQKV-KKEQGEIVHYIKDGAQ 76

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V+ G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R 
Sbjct: 77  VKLGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARI 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------ 673
           D    + ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N      
Sbjct: 129 DFNELQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTI 186

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 187 QEIRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|310778595|ref|YP_003966928.1| Threonyl/alanyl tRNA synthetase SAD [Ilyobacter polytropus DSM
           2926]
 gi|309747918|gb|ADO82580.1| Threonyl/alanyl tRNA synthetase SAD [Ilyobacter polytropus DSM
           2926]
          Length = 372

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 39/280 (13%)

Query: 505 AVSGQKVE----VVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            VS +KV+    +  + +P Y +  GGQLGD G          I  V+K       ++ +
Sbjct: 6   VVSCEKVKNGYKITLEDSPLYQDGKGGQLGDRGSIANK----NILSVEK-------NYIL 54

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCIT 613
           V+  +   E  L   IDY  R+ + + H+A HL        ++L+T+ G  +++  S + 
Sbjct: 55  VDGEVQLGENDLF--IDYDRRKDIEVQHTAQHLFSAIAYNEYSLNTV-GFRMAEEYSTVD 111

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY 672
            D        SK +T   +K IE  VN+ I  ++PV T I+ RE+ +   G    +  K 
Sbjct: 112 LD--------SKDLTEENIKGIEKMVNNAIKSSIPVETSIVKREEVMTLEGMRKTVSEKV 163

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              VR+V +    G + ++A CGG HV++  E+ +  I+S   I+    R   I G RA 
Sbjct: 164 TGDVRIVKI----GDLDTNA-CGGFHVNNICELQIFKILSWEKIKGNYTRFYYIAGNRAI 218

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
               G+++ +  L   L   +  ++  ++++  + +  +L
Sbjct: 219 EDYYGKNKLIGKLCQTLSCRENEIITMIDKMVSDKKSSEL 258


>gi|218896708|ref|YP_002445119.1| alanyl-tRNA synthetase domain protein [Bacillus cereus G9842]
 gi|228964758|ref|ZP_04125865.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218544569|gb|ACK96963.1| alanyl-tRNA synthetase domain protein [Bacillus cereus G9842]
 gi|228795008|gb|EEM42507.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 236

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|75761803|ref|ZP_00741737.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228900357|ref|ZP_04064586.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           4222]
 gi|74490715|gb|EAO53997.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228859244|gb|EEN03675.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           4222]
          Length = 236

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEAVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|30019816|ref|NP_831447.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus cereus ATCC 14579]
 gi|228958054|ref|ZP_04119789.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043529|ref|ZP_04191238.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus AH676]
 gi|229127100|ref|ZP_04256097.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-Cer4]
 gi|29895361|gb|AAP08648.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus cereus ATCC 14579]
 gi|228656216|gb|EEL12057.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-Cer4]
 gi|228725751|gb|EEL76999.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus AH676]
 gi|228801571|gb|EEM48453.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 236

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|296502374|ref|YP_003664074.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
 gi|296323426|gb|ADH06354.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
          Length = 236

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|324325791|gb|ADY21051.1| alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 236

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G  
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHY--IKDGAQ 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|228920483|ref|ZP_04083828.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229069324|ref|ZP_04202614.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus F65185]
 gi|229078955|ref|ZP_04211507.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock4-2]
 gi|229109229|ref|ZP_04238828.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock1-15]
 gi|229178181|ref|ZP_04305552.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 172560W]
 gi|228605311|gb|EEK62761.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 172560W]
 gi|228674239|gb|EEL29484.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock1-15]
 gi|228704369|gb|EEL56803.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock4-2]
 gi|228713811|gb|EEL65696.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus F65185]
 gi|228839113|gb|EEM84409.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 236

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|218902887|ref|YP_002450721.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH820]
 gi|228914351|ref|ZP_04077966.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228933057|ref|ZP_04095920.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229121325|ref|ZP_04250556.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 95/8201]
 gi|218539979|gb|ACK92377.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH820]
 gi|228662170|gb|EEL17779.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 95/8201]
 gi|228826658|gb|EEM72429.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228845345|gb|EEM90381.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 236

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G  
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHY--IKDGAQ 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPATIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|229189871|ref|ZP_04316881.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10876]
 gi|228593545|gb|EEK51354.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10876]
          Length = 236

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETIFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|228952156|ref|ZP_04114248.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807510|gb|EEM54037.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 236

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETIFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|90018162|gb|ABD83894.1| alanyl-tRNA synthetase-like [Ictalurus punctatus]
          Length = 92

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 5/84 (5%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           + IR  F++FF++  HE + SSS IP +DPTL+F N+GM  FK IF     P +     
Sbjct: 7  AAQIREKFIDFFRRYEHEYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMARL 66

Query: 59 QAVTTVQKCVRAGGKHNDLDNVGR 82
          +     QKC+RAGGK NDLD+VG+
Sbjct: 67 KRAANTQKCIRAGGKRNDLDDVGK 90


>gi|94971059|ref|YP_593107.1| threonyl/alanyl tRNA synthetase, SAD [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553109|gb|ABF43033.1| Threonyl/alanyl tRNA synthetase, SAD [Candidatus Koribacter
           versatilis Ellin345]
          Length = 403

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 184/425 (43%), Gaps = 52/425 (12%)

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRL 541
           L N  ++++ A V+ G  +          VV D+T FY  +GGQ+ DTG      D  +L
Sbjct: 12  LLNFTAAVLDARVEDGRAI----------VVLDRTAFYPTSGGQIFDTGWMELEKDARKL 61

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI- 600
           ++++V +  EG+  H+          +  +   ID + RR     H+  H+L  A  ++ 
Sbjct: 62  RVSEVGETEEGVIQHYVDTSDVETLKDGRVRGFIDVERRRDHMQQHTGQHVLSSAFESLF 121

Query: 601 ----LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
               +  H+      I  D        +K +   ++K  E   N++IA++ PV  +    
Sbjct: 122 EMKTVSFHMGAESCTIDLD--------TKALAPEQVKKAEAVANEVIAEDRPVEIKYATV 173

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A G   +   +  +++R++ ++  D        CGGTHV +TG+I  L I   +  
Sbjct: 174 DEARAMGVRKIPPAE-REKLRLIDIKDFDLNA-----CGGTHVRATGQIGGLLIRKIAKE 227

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G  R+E + G RA +      E L   A+       +V  +V ++ EE +       K
Sbjct: 228 KQGF-RVEFVCGGRAVNTARRDFETLTDAATLFSSHIYDVPVQVRKLIEENKA----GTK 282

Query: 777 RKLQLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           R+ +L  E      D+   ++ D   +    ++ D   +K +   L +  Q  ++ L+G 
Sbjct: 283 REHKLLEEVASLTADVMLAQLGDKKVVRQFYTDRDMTFIKLLAQRLTR--QGSVVALLGC 340

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888
              + A V+   T  L +     D+  L  + L   GG GGG   MAQ G  + +K +  
Sbjct: 341 GGTQPA-VIFAQTSGLPN-----DMGGLMKEALVELGGRGGGNKDMAQGGATDASKIEAV 394

Query: 889 IAGVA 893
           +  +A
Sbjct: 395 LEKIA 399


>gi|228926809|ref|ZP_04089877.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832922|gb|EEM78491.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 236

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 20/226 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G  
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHY--IKDGAQ 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPATIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++E  D        CGGTHV +T E+  L I    S     RR E 
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEVGTLVIDKVKSKGKQNRRFEV 233


>gi|301053311|ref|YP_003791522.1| putative alanine-tRNA ligase [Bacillus anthracis CI]
 gi|300375480|gb|ADK04384.1| possible alanine-tRNA ligase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 236

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 104/211 (49%), Gaps = 20/211 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V KK +G  VH+  ++ G  
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KKEQGEIVHY--IKDGAQ 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D    +
Sbjct: 77  VKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQ 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVV 679
            ++S E++ I   VN +I QN  + TR M+RE+  A  A  ++ T  N        +R+V
Sbjct: 135 ELSSVEVEEIVKEVNKLIKQNKEISTRYMSREE--AENAVGMIKTAINLLPITIQEIRIV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++E  D        CGGTHV +T EI  L I
Sbjct: 193 TIENLD-----EQACGGTHVKNTSEIGTLVI 218


>gi|228938887|ref|ZP_04101487.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971768|ref|ZP_04132389.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978377|ref|ZP_04138754.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           Bt407]
 gi|228781394|gb|EEM29595.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           Bt407]
 gi|228787858|gb|EEM35816.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820736|gb|EEM66761.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939387|gb|AEA15283.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 236

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V K+ +G  VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KREQGEIVHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++ EM      +++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVKLEM------NWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + TR M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIEQNKEISTRYMSREE--AENAVGMIKTAINLLPTTIRE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|169835921|ref|ZP_02869109.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 69

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162
           K+ AI  AW+ +T+   L + RLY+TV++ D+EAF LW++   ++ ++I R   +DNFW 
Sbjct: 1   KKDAIAYAWEFVTQVLKLPKDRLYVTVHESDDEAFALWEQ--HIAKERIYRFGDHDNFWQ 58

Query: 163 MAETGPCGPCS 173
           M +TGPCGPCS
Sbjct: 59  MGDTGPCGPCS 69


>gi|56067733|gb|AAV70334.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067735|gb|AAV70335.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 162

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 7/132 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 34  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 92

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 93  GVVE-GTLRVGDEVHCHMDVM-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 150

Query: 617 LRFDVTHSKPIT 628
           LRFD T+   +T
Sbjct: 151 LRFDFTNKSAMT 162


>gi|37784160|gb|AAO86574.1| alanyl-tRNA synthetase [Hydrogenobacter hydrogenophilus]
          Length = 57

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 40 NSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
          N+GMV FKN+F G EK  Y    + QKC+R  GKHNDL++VG T+RHHTFFEM G F
Sbjct: 1  NAGMVQFKNVFLGIEKRPYTRAVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMKGEF 57


>gi|210609958|ref|ZP_03288187.1| hypothetical protein CLONEX_00371 [Clostridium nexile DSM 1787]
 gi|210152704|gb|EEA83710.1| hypothetical protein CLONEX_00371 [Clostridium nexile DSM 1787]
          Length = 394

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 167/378 (44%), Gaps = 44/378 (11%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           SG+  EVV D+T F+ E GGQ  DTG  + D    ++TDVQ+KA GI  H       I +
Sbjct: 25  SGEVYEVVLDRTAFFPEGGGQYADTG-RLDDA---KVTDVQEKA-GIIYHKTNQSLEIGK 79

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           T      TID++ R      HS  H++   +  + G      G  +  D +  D   S  
Sbjct: 80  TVQG---TIDWEERFSKMQQHSGEHIVSGIVHAVYG--YDNVGFHMGKDAITMDFNGS-- 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNRE--DAIASGAAALLGTKYNDRVRVVSVEYE 684
           I+  ELK IE   N+ + ++L +      +E  D+IA  +      +   +VR+V +   
Sbjct: 133 ISKEELKVIERKANEAVVKSLDIKVLYPAKEELDSIAYRSK----IEIEGQVRIVEIPGY 188

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        C   HV  TGEI L+ +++  + + G+ RI  + G RA      + E +K 
Sbjct: 189 D-----VCACCAPHVKKTGEIGLIKLLNVQNYKGGV-RISMLCGFRALQDYEQKAESVKK 242

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHII- 801
           ++  L   +       EE++ E  +L  ++   K K+    + L  +K+  +     ++ 
Sbjct: 243 ISVLLSAPE-------EEVFSEVTRLKQEISSGKAKVSQLQQKLLVYKVEQIPQSQEVVV 295

Query: 802 ---SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
               E++    + + + +   I++G  +    + ++K     V+     D    +   RL
Sbjct: 296 WFEEELEGNAPRELTNLI---IENGASIGAVFAGDEKDGYRYVIGSKSCD--TRIFSKRL 350

Query: 859 SAKVLGGGGGGGRPHMAQ 876
           + K   GG GGG+P M Q
Sbjct: 351 NEKF--GGRGGGKPEMVQ 366


>gi|319654730|ref|ZP_08008809.1| hypothetical protein HMPREF1013_05431 [Bacillus sp. 2_A_57_CT2]
 gi|317393646|gb|EFV74405.1| hypothetical protein HMPREF1013_05431 [Bacillus sp. 2_A_57_CT2]
          Length = 400

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 39/380 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +K+  V  +T FY   GGQ  D G   G    +++ DV++ AEG   H+  +ER +  + 
Sbjct: 27  EKIYAVLKETAFYPTGGGQPHDEGTLNG----VKVLDVEE-AEGEIRHY--LERELDPSI 79

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTH 623
            S+   ID+  R      H+  H+L  A   + G      H+ +    I  D     V H
Sbjct: 80  SSVSGEIDWNRRFDHMQQHAGQHILSAAFEELYGYKTVSFHLGKETLTIDLDISELPVRH 139

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           ++          E   N II +N P+  R ++ E+A        L  + + R+ V+  E+
Sbjct: 140 AE--------EAERLANRIILENRPIEARWVSAEEASQFPLRKQLSVREDIRL-VMIPEF 190

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           +  G      CGGTH SSTG++  + ++     +  I R++ I G R  + L  + E  K
Sbjct: 191 DYNG------CGGTHPSSTGQVAGIKVLDWERQKKKI-RVQFICGNRILAQLQSKHEITK 243

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           +L+  L  S+ ++      + E  + L  QL  AK  L L  E        +    S + 
Sbjct: 244 NLSQLLNASEEDLPSAASRLIENGKNLEKQLEAAKEAL-LAYEAKELFIAGNGECTSKVF 302

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
                +EL+ +   +  + ++ +++L+  + +K    L  V     D  +  D+  L+A+
Sbjct: 303 EGRSIQELQKLARLIASQSENAVVILINETADK----LQFVCASGAD--SGSDMKGLAAE 356

Query: 862 VLG--GGGGGGRPHMAQSGG 879
           +L    G GGG P  AQ GG
Sbjct: 357 LLQKINGKGGGNPQFAQGGG 376


>gi|41615006|ref|NP_963504.1| hypothetical protein NEQ211 [Nanoarchaeum equitans Kin4-M]
 gi|40068730|gb|AAR39065.1| NEQ211 [Nanoarchaeum equitans Kin4-M]
          Length = 499

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 193/455 (42%), Gaps = 49/455 (10%)

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE--QRSRARAHSLGLGSGTTEK 443
           V F+LY + G+  D++ D +  +         F + LE+  Q+S+A  H   +    +  
Sbjct: 44  VLFELYISKGITPDLIVDHIPEK---------FYELLEKHRQKSKAEKHKKEIDIDVS-- 92

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMK----------EDRKVLCQKPPIDLTNGVSSIVK 493
                  KY  T+F    L     F+K          +D  +  +        G      
Sbjct: 93  -------KYKPTEF----LFWKDTFLKFCEANLLGIEKDYAIFDKTVFYPTMGGQEHDTG 141

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            I+ +  +V    +GQ  +      PFY +      D      + + +++ DV KK + I
Sbjct: 142 YIIDRDSLVYLYKTGQYSKY---NIPFYKDVYEYYKDYQYKKEEIVFVRVIDVIKKGKVI 198

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
              H + +   L+   + VL ID+  R QLS NH+A H++      + G H+ Q G+   
Sbjct: 199 L--HKVDDIEKLKKIENPVLLIDFDRRLQLSRNHTAVHIITGIARKLFGEHIWQAGAEKK 256

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKY 672
            +    D+TH K ++  EL+ +E   N I+ +  P+    + + +A    G     G   
Sbjct: 257 YEYATIDLTHYKNLSDEELELLEKEANKIVMEMRPIKKYFLPKNEAEKRFGFRIYQGGVV 316

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            +++  + VE ED  V +   C GTH+ +T ++  + I++   I     RI   TG +A 
Sbjct: 317 PEKILRI-VEIEDLDVEA---CSGTHLDNTIQVGYIKILASKKISDNTIRIYLTTGNQAV 372

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             ++ +D+ LK ++   K    N    V++ ++ ++ ++     +K    ++D       
Sbjct: 373 KEIIKRDKILKEISKITKTDIDNTPIAVKKFFDNWKAME-----KKYDSLLKDYFRLIQE 427

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +N   +II   DS EL  ++  ++K I    ++L
Sbjct: 428 KINNGEYIIKVSDSLELSDLIKLIKKLIDLDCVVL 462


>gi|257440072|ref|ZP_05615827.1| putative DHHA1 domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257197424|gb|EEU95708.1| putative DHHA1 domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 394

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 22/267 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +  D T FY E GGQ  D G   + DG  L +TDV ++A G+  H               
Sbjct: 35  IALDGTVFYPEGGGQPADRGTLTLADGTVLTVTDVHEQA-GVIWHMVTSLPAGAVPGAEA 93

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      H+  H+L   L ++ G+     G  I  D +R D   + PI++  
Sbjct: 94  AQAIDWAWRFDKMQQHTGEHILSGILHSMFGAE--NVGFHIGSDAVRMDT--NIPISAEG 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----RVRVVSVEYEDGG 687
           LK+ E   N II +N+PV      RE+       A+L  +       +VR+V++   D  
Sbjct: 150 LKAAETAANRIIWENVPVNITYPTREE------LAILTYRSKKEIEGQVRIVTIPGAD-- 201

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C GTH + TG +  + I++  + + G+ R+  + G RA         +   + +
Sbjct: 202 ---VCACCGTHTAFTGAVGQIKILAAENYKGGV-RLSIVCGGRALEAAQAMRARQAEIGA 257

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            L          V  +++EY  L+  H
Sbjct: 258 LLSAKASETANAVHRVYDEYTALKFTH 284


>gi|134300172|ref|YP_001113668.1| phage tail protein I [Desulfotomaculum reducens MI-1]
 gi|134052872|gb|ABO50843.1| phage tail protein I [Desulfotomaculum reducens MI-1]
          Length = 404

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 23/268 (8%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRT 567
           K  ++F++T FY E GGQ  D G  + D  R   ++  V+++ EGI   H I   G L+ 
Sbjct: 27  KTGILFEETIFYPEGGGQPSDRGTLVCDARRTSHEVLHVEQRPEGIV--HWIA--GSLKP 82

Query: 568 EM--SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTH 623
            +  S++LT+D + R+    +H   H   H LS +   +   +  G  + P+    D+T 
Sbjct: 83  TIGASVLLTVDAERRQ----DHMQQHHGQHILSAVFERNYGWDTVGFHLGPETSTIDLTV 138

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              I+   L+ +E  VN II +N+PV T    RED +       L +  N+ VR+V +  
Sbjct: 139 GD-ISQDVLQEVELEVNRIIMENIPVKTEYYKRED-LGQELIKKLPSDQNE-VRLVVIP- 194

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G+  +A C GTH   TGE+    I+    +R  I R+  I G+R  + +    + L 
Sbjct: 195 ---GIDENACC-GTHPQRTGEVGPCKILKIEKLRGNI-RLSFICGERTIAWMRQTADTLH 249

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            L   +  S    + R+E+   E +KLQ
Sbjct: 250 QLEKAIGASGNEALIRLEKREVELKKLQ 277


>gi|164686159|ref|ZP_02210189.1| hypothetical protein CLOBAR_02597 [Clostridium bartlettii DSM
           16795]
 gi|164601761|gb|EDQ95226.1| hypothetical protein CLOBAR_02597 [Clostridium bartlettii DSM
           16795]
          Length = 353

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 122/274 (44%), Gaps = 37/274 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI++      K  +V D+T FY E GGQL    C +G      I  V +K + I+  H 
Sbjct: 16  AEIIDIKEIDNKFHIVLDKTGFYPEGGGQL----CDLGKIDSHDIEYVYEKDDVIY--HV 69

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL---------GSHVSQNG 609
           +  + I   ++  +L     NRR+ S+ H   HL  H +S +            H+    
Sbjct: 70  LNTKPIKIHKVKCILN---WNRREYSMTH---HLAQHIISALFLKEFNKKTTSFHMGIED 123

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           SC+  +G           +  E+K IE   NDIIA+N+PV T  + +++A          
Sbjct: 124 SCVDIEG---------SFSDKEIKKIEKMANDIIAENIPVETFEITKKEAKKLKLKDDF- 173

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           +K N  VR+V V     G   +  C G H  +T ++ ++        +    RIE + G+
Sbjct: 174 SKINGNVRIVKV-----GDLDTNCCCGVHPQNTLDLRIIKFKKHEKYKTS-TRIEYLAGK 227

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +A ++++ +D+ L  +  +L  S  + +  +E I
Sbjct: 228 KAINYIINRDDNLSKICKYLSCSDEDSIKGIENI 261


>gi|150019605|ref|YP_001311859.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906070|gb|ABR36903.1| Threonyl/alanyl tRNA synthetase, SAD [Clostridium beijerinckii
           NCIMB 8052]
          Length = 403

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 185/406 (45%), Gaps = 48/406 (11%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EIV+      K  V+ D+T F+   GGQ     C IG     ++ DV +K E   V+H 
Sbjct: 16  AEIVDIKEIDNKFHVILDKTAFFPGGGGQ----SCDIGTLEDQKVIDVYEKEE--IVYH- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCIT 613
           +VE+  L+    +  +ID+  R+     H   H+L  +   +  +     H+  + S + 
Sbjct: 69  VVEKKPLKIH-KVKCSIDWDIRQDGMHQHLGQHVLSGSFFNLFNANTFAIHLGSDISTVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAAALLGTKY 672
             G+         +T  +++  E   N +I   LPV + +  + E    S   AL  T+ 
Sbjct: 128 IYGV---------LTEEQVREAERLANKVIGDALPVESFVPTKAELKKLSLRRALPNTE- 177

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            + +R+V +    G    +A C G H +ST ++ L+ I      + G  RIE + G+RA 
Sbjct: 178 -EDIRIVKI----GDFDINACC-GLHPTSTLDLRLIKIKKFEKHKEGT-RIEFLAGERAI 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVED 785
           S    +DE   S+  +L  ++   +  ++ + +  R+       L ++ AK +++  +E+
Sbjct: 231 SDSFKKDEFQTSICRYLSCNENEAINGIKNLNQNLREANETNKNLNILLAKYQVKEILEN 290

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTE 844
            +  KI +V  +  I    D + LK V +   K I++   I L+ +  ++K ++L   ++
Sbjct: 291 AA--KINNVKVIKQIF---DGENLKYVNNLTSKLIENENTIALMAVKSDEKVNLLFACSK 345

Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           D+ D + N +    +S   L  G GGG P  AQ  G N +  + A+
Sbjct: 346 DIKDIKMNELLKDAIS---LIDGKGGGSPFQAQGAGKNNSNLESAM 388


>gi|212224908|ref|YP_002308144.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           onnurineus NA1]
 gi|212009865|gb|ACJ17247.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           onnurineus NA1]
          Length = 404

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 161/362 (44%), Gaps = 54/362 (14%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
           G  ++V+A V+QG  V        + +  D+T FY E GGQ  D G   G+G R+ +  V
Sbjct: 14  GSEAVVQA-VEQGNGV--------IRLALDRTIFYPEGGGQPSDRGVIEGNGFRVLVDRV 64

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            ++      H   +E  +      + L +D+  R +   NH+  H+L   L  + G  + 
Sbjct: 65  YERDR--IWHEGKLEGRLPEAGERVRLVLDWDWRYENMKNHTGQHILSAVLKNLYG--LD 120

Query: 607 QNGSCITPDGLRFDVT---HSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIAS 662
             G  I  D  + +V      + IT AE+++     N I+ + +PV V    +  D IA 
Sbjct: 121 TTGFQIFDDYNKIEVNGELDWEMITRAEIEA-----NSIVWEAIPVTVEEFKDLPDDIAR 175

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                + +K  DRVR+V +    G +  +  CGGTHV +T EI L+ ++        + R
Sbjct: 176 TLRKHV-SKVTDRVRIVMI----GDIDRTP-CGGTHVRNTSEIGLIKVLRFYRKSKKLWR 229

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFL----KVSQGN--VVGRVEEIWEEYRKL------ 770
           IE + G RA  +L       K LA +     ++   N  +V RV+++  E  KL      
Sbjct: 230 IEFVAGNRALKYLN------KLLADYWESLDEMPNKNRPLVERVKDLKAELDKLEEEKDN 283

Query: 771 ---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +L   K K  L+       +I  V  +SHI S  D K+ ++ +  L  K    I ++
Sbjct: 284 LRKELWEWKAKALLD----RAEEIGGVRIVSHIES-ADMKDAQAFVVYLVDKNPGTIALV 338

Query: 828 VG 829
           VG
Sbjct: 339 VG 340


>gi|289581020|ref|YP_003479486.1| Alanyl-tRNA synthetase, class IIc-like protein [Natrialba magadii
           ATCC 43099]
 gi|289530573|gb|ADD04924.1| Alanyl-tRNA synthetase, class IIc-like protein [Natrialba magadii
           ATCC 43099]
          Length = 249

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 14/201 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           +V DQT FY E GGQ  D G   + DG     +TDVQKK      HH  +E G       
Sbjct: 27  LVLDQTAFYPEGGGQPADIGSLRLEDGTESWSVTDVQKK--DTIYHHLELENGAEAPAPG 84

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++V  +D   RR  +  H+A HLL   L     +  +  G+ +  D  R D  + +   
Sbjct: 85  TTVVGELDADRRRAHNRYHTAQHLLSAVLLEEFDAQTT--GNQLYADRARLDCAYER-FE 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYE 684
            A+L+ +E  +ND++   LPV    ++REDA A          L  +    VR+V +  +
Sbjct: 142 DADLERLEQRLNDLVDDELPVTWDTLDREDAEARLDPDRTRLHLLPESITEVRIVQIGAD 201

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
           D  +  +A C GTHV +TGEI
Sbjct: 202 DAVIDRTA-CAGTHVENTGEI 221


>gi|302557376|ref|ZP_07309718.1| alanine-tRNA ligase [Streptomyces griseoflavus Tu4000]
 gi|302474994|gb|EFL38087.1| alanine-tRNA ligase [Streptomyces griseoflavus Tu4000]
          Length = 132

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 7/86 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  FL+FF + GH  +PS+ L  C+ DPTL+F N+GMVPFK   TG+    +    +
Sbjct: 50  AEIRRRFLDFFAERGHTAVPSAPL--CSPDPTLLFVNAGMVPFKPYLTGEASTPWPRAAS 107

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTF 89
           VQKCVR      D++ VGRT RH +F
Sbjct: 108 VQKCVRT----LDIEEVGRTTRHASF 129


>gi|302386087|ref|YP_003821909.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           saccharolyticum WM1]
 gi|302196715|gb|ADL04286.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           saccharolyticum WM1]
          Length = 384

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 32/261 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V+ D+T FY   GGQ  D G  +G+     + DV++ AEGI +H        L+    +
Sbjct: 30  QVLLDRTAFYPVGGGQPADRG-TLGEA---AVLDVREMAEGI-IHFTDKP---LKPGSRV 81

Query: 572 VLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           + TID++ R  L  NHS  HLL      H+ L  + G H+ ++   +  +G         
Sbjct: 82  IGTIDWERRFCLMQNHSGEHLLSGIVHKHYGLDNV-GFHMGKDEVTVDFNG--------- 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P+T  ++++ E  VNDII +N+PVV    ++E+   S        +   +VR+  +E+  
Sbjct: 132 PLTLEQIEAAEAEVNDIIWRNIPVVEFYPSKEE--LSRMDYRSKKELTGQVRL--IEFPG 187

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G V     C GTHV S+GEI +L +      + G+ R+  + G+ A      + + +  +
Sbjct: 188 GDV---CACCGTHVMSSGEIGILKVTGMIHYKGGV-RVSMVCGRLALQDYGNKQKAVSGI 243

Query: 746 ASFLKVSQGNVVGRVEEIWEE 766
           +  L      V+  V+ + EE
Sbjct: 244 SILLSAKPDQVLEAVDRLKEE 264


>gi|153814088|ref|ZP_01966756.1| hypothetical protein RUMTOR_00297 [Ruminococcus torques ATCC 27756]
 gi|317499897|ref|ZP_07958133.1| hypothetical protein HMPREF1026_00075 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087880|ref|ZP_08336805.1| hypothetical protein HMPREF1025_00388 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848484|gb|EDK25402.1| hypothetical protein RUMTOR_00297 [Ruminococcus torques ATCC 27756]
 gi|316898614|gb|EFV20649.1| hypothetical protein HMPREF1026_00075 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409575|gb|EGG89016.1| hypothetical protein HMPREF1025_00388 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 165/396 (41%), Gaps = 50/396 (12%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTG---------CAIGDGIR--LQITDVQKKAEGIFV 555
           +G+  E+  D+T F+ E GGQ  DTG         C + +  R  +Q+ DV+++   IF 
Sbjct: 41  AGEYYEIELDRTAFFPEGGGQYADTGVLYMADDDTCGLDETARKKVQVLDVRERNGRIF- 99

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQNGS 610
           H   +  G +  + ++  +ID++ R      H+  H    L+H A     +G H+     
Sbjct: 100 H---ITDGFIEAKTAVKGSIDWEERFMKMQQHTGEHIVSGLIHAAYGYNNVGFHLGSEDC 156

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +  DG          IT  EL+ IE   N  + +NL V T    +E+   S        
Sbjct: 157 TMDFDG---------EITEEELRRIEAEANKAVWKNLKVFTHYPKKEE--LSQIEYRSKI 205

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           +   +VR++ +     G    A C   HV+ TGEI L+ +V     + G+ RI  + G R
Sbjct: 206 EIEGQVRIIEIP----GYDCCACC-APHVTYTGEIGLIKLVQAQRYKGGV-RITMLCGVR 259

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSC 788
           A S  + ++ + K ++  L   +  +   V  + EE  +L  +L   +R+L     D+  
Sbjct: 260 AFSDYVRKEAQAKEISRLLCAKENEIADAVAHLAEETNQLKYELAEKERRLVKAYADMIS 319

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
                V   +    E     ++ +M+ +         +  G  K+    VL    +D+  
Sbjct: 320 ESKDAVCIFT---EEFGGDSMRMLMNYVLDAGHCICAVFFGNEKDGYRYVLGSRQQDVR- 375

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
                ++A+   K    G GGG+P M Q G   G K
Sbjct: 376 -----EMAKEFNKRF-DGRGGGKPEMVQ-GTVRGEK 404


>gi|331085926|ref|ZP_08335009.1| hypothetical protein HMPREF0987_01312 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406849|gb|EGG86354.1| hypothetical protein HMPREF0987_01312 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 326

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 28/300 (9%)

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           S   AIVQ     E   SG   E++ D+T F+ E GGQ  DTG   G    + ++DVQ +
Sbjct: 13  STFTAIVQ-----EVRPSGNGYEIILDRTAFFPEGGGQSSDTGSLGG----VSVSDVQ-E 62

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H+     G L     +   ID+  R      H+  H++   +  I G H    G
Sbjct: 63  IDGKIIHYT---DGPLVEGTEVEGCIDWTERFSKMQQHTGEHIVSGLIHKIYGYH--NVG 117

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  D +  D     P    +L  IE   N+ +A+NLPV  +++   D   S  +    
Sbjct: 118 FHLGTDSVTLDFNGGVP--KEKLHEIEQLANEAVAKNLPV--QVLYPTDEELSKISYRSK 173

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            +   +VR+V +   DG  +    C   HV  TGEI L+ +V   + + G+ RI  + G 
Sbjct: 174 IEIEGQVRIVVI---DG--YDVCACCAPHVKQTGEIGLIKLVGMQNYKGGV-RISMLCGF 227

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE--YRKLQLIHAKRK-LQLNVEDL 786
           RA      +++  + +A  L   +      VE + EE   +K ++   +RK L+  VE L
Sbjct: 228 RALEDYYQKEKNNREIAVMLSAKEYETAVEVERLQEELAMKKAKIAELERKFLEQKVETL 287


>gi|56067669|gb|AAV70302.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067671|gb|AAV70303.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067743|gb|AAV70339.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 161

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 7/131 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 34  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 92

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 93  GVVE-GTLRVGDEVHCHMDVM-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 150

Query: 617 LRFDVTHSKPI 627
           LRFD T+   +
Sbjct: 151 LRFDFTNKSAM 161


>gi|149508352|ref|XP_001507948.1| PREDICTED: similar to Aars2 protein [Ornithorhynchus anatinus]
          Length = 725

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 110/246 (44%), Gaps = 32/246 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHH 557
           G  ++EA  GQK  ++ D+T FYAE GGQ GD G  + +G +  +  V   +  G FV H
Sbjct: 96  GAALDEAGGGQKCGLLLDRTSFYAEQGGQAGDRGYLLIEGQQDVLFPVAGAQLSGGFVLH 155

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +   G LR    + L +D   R      H+ATHLL  AL  +LG  V+Q G+ + P+ L
Sbjct: 156 EVTAYGRLRVGDRVQLFVDEAWRLGCMEKHTATHLLSWALRRVLGPEVAQRGAHLGPEQL 215

Query: 618 RFDVTHSKPITSAELKS-----------IEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           RFDV   +   +  + S              + ND+  +          RE  ++ G  A
Sbjct: 216 RFDVATKEEQVAWGVPSDPPVPRGRRRPPGPSWNDLGER---------RREPGVSPGPPA 266

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L         RV S   +        +    H+  TG I  L IV +  +  G  R+ A+
Sbjct: 267 LH--------RVGSFPGQPSPPRRGVV---RHLLRTGAIGDLSIVGDRQVVKGTVRLVAV 315

Query: 727 TGQRAR 732
           TG++A+
Sbjct: 316 TGEQAQ 321


>gi|228907407|ref|ZP_04071265.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           200]
 gi|228852268|gb|EEM97064.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           200]
          Length = 236

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 28/230 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH----AIVE 561
           V G KV V   +T FY   GGQ  DTG  + DG   ++  V+K+ E I VH+    A V+
Sbjct: 22  VEGNKVFV--KETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQEEI-VHYIKDEAQVK 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++      L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D 
Sbjct: 79  LGPVK------LEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDF 130

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DR 675
              + ++S E++ I + VN +I QN  + T  M+RE+  A  A  ++ T  N        
Sbjct: 131 NELQELSSVEVEEIVEEVNKLIKQNKEISTCYMSREE--AENAVGMIKTAINLLPTTIQE 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V++E  D        CGGTHV +T EI  L I    S     RR E 
Sbjct: 189 IRIVTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEV 233


>gi|225874002|ref|YP_002755461.1| threonyl and Alanyl tRNA synthetase/DHHA1 domain protein
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794335|gb|ACO34425.1| threonyl and Alanyl tRNA synthetase/DHHA1 domain protein
           [Acidobacterium capsulatum ATCC 51196]
          Length = 422

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 173/397 (43%), Gaps = 48/397 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-----CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +V  D++ FY  +GGQ  D G       +G+ + L +  V++  +G  V H + +  I  
Sbjct: 37  QVALDRSAFYPTSGGQPFDLGLLRATSRLGNVLELPVVAVEEDEQG-EVWHFVQKPLIAG 95

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLL-----HHALSTILGSHVSQNGSCITPDGLRFDV 621
           T++  +  +D+  R      HS  HLL     H   +  L  H+ +  S I  D      
Sbjct: 96  TQIEGL--VDWPRRLDHMQQHSGQHLLSAVFAHELEAHTLSFHLGEEVSTIDLD------ 147

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRV 678
               P+  A L  IE   N+ IA N PV  R + R +A   +ASG    L  + +  +R+
Sbjct: 148 --CGPLDEATLVRIERIANEQIAGNRPVRVRQLPRSEAEAMLASGELRKLPER-DGELRI 204

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +E  D        CGGTHV++TG+I  L I     +  G+ R+  + G RA       
Sbjct: 205 IEIEDYDRNA-----CGGTHVNTTGQIGSLLIRGTEKVSRGV-RVSYVCGLRAVMAARQD 258

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------ 792
              L S A+ L V   +V   VE +  E +    +   +KL+  +      +IA      
Sbjct: 259 AAILASTAAQLSVGVPDVPASVERLRSEAKA--AVKVNQKLREELAHYQATQIAVEVPIQ 316

Query: 793 -DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             + ++  ++++ D+  L+ +  +L   +   I +L   S E+  +V +V+   L    +
Sbjct: 317 NGLRWVDRVMNDRDADYLRMLASSLAAAVPRTIALL---SCEQGQTVRLVLARSLDLDLH 373

Query: 852 AVDLARLSAKVLGGGG--GGGRPHMAQSGGPNGNKAD 886
             D+ +    VL   G  GGG P +AQ+  P    A+
Sbjct: 374 CGDVMK---AVLARFGLRGGGSPGLAQTDVPLARLAE 407


>gi|56067697|gb|AAV70316.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 7/136 (5%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQK 548
           V A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  
Sbjct: 25  VVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYN 84

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQ 607
           +  G  +H  +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q
Sbjct: 85  RG-GYVLHIGVVE-GTLRVGDEVHCHMDVM-RRQLTMKNHSATHALNHSLLKVLGQDTDQ 141

Query: 608 NGSCITPDGLRFDVTH 623
            GS + P+ LRFD T+
Sbjct: 142 RGSLVVPEKLRFDFTN 157


>gi|56067665|gb|AAV70300.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067667|gb|AAV70301.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067675|gb|AAV70305.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067687|gb|AAV70311.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067703|gb|AAV70319.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067729|gb|AAV70332.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067731|gb|AAV70333.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 34  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 92

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 93  GVVE-GTLRVGDEVHCHMDVM-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 150

Query: 617 LRFDVTH 623
           LRFD T+
Sbjct: 151 LRFDFTN 157


>gi|56067723|gb|AAV70329.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 21  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 79

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 80  GVVE-GTLRVGDEVHCHMDVM-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 137

Query: 617 LRFDVTH 623
           LRFD T+
Sbjct: 138 LRFDFTN 144


>gi|56067689|gb|AAV70312.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 130

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 4   FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 62

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 63  GVVE-GTLRVGDEVHCHMDVM-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 120

Query: 617 LRFDVTH 623
           LRFD T+
Sbjct: 121 LRFDFTN 127


>gi|13470598|ref|NP_102167.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|14021340|dbj|BAB47953.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 248

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++FD+T FYA +GGQ GDTG     DG R+ I   +  + +   +H    ++  L     
Sbjct: 32  IIFDRTIFYATSGGQPGDTGHLERADGSRIAIAATITGETKDEIIHVPAPQQAALAVGEK 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           + L ID++ R  L   H+A HLL       I G+ VS++ S +      FD+    P  S
Sbjct: 92  VKLAIDWERRHLLMRMHAACHLLTVVCPFPITGAAVSEDDSRVD-----FDI----PDAS 142

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY------NDRVRVVSVEY 683
              + +  ++ D++  N P+ TR+++ E+  A+    L+ +K         ++R+V +  
Sbjct: 143 FSKEEVTASLMDLVRANHPIFTRLISDEELAAN--PGLVKSKNVRPPVGTGKIRLVCIG- 199

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           E+G V S   CGGTHV STGEI  ++I
Sbjct: 200 ENGAVDSQP-CGGTHVKSTGEIGEIHI 225


>gi|56067661|gb|AAV70298.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067663|gb|AAV70299.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067741|gb|AAV70338.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067745|gb|AAV70340.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067747|gb|AAV70341.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 161

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 7/131 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 34  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 92

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 93  GVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 150

Query: 617 LRFDVTHSKPI 627
           LRFD T+   +
Sbjct: 151 LRFDFTNKSAM 161


>gi|205372400|ref|ZP_03225214.1| hypothetical protein Bcoam_02729 [Bacillus coahuilensis m4-4]
          Length = 396

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 167/372 (44%), Gaps = 29/372 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + +T V+++ +G   H+  +E  +   E++L 
Sbjct: 31  VVLEETIFYPTGGGQPHDTGTMNG----VVVTQVERE-DGEIRHY--IETALPEGEVTLE 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L  D+  R      H+  H+L  A +  LG         +  D L  D+  +  +T  E 
Sbjct: 84  L--DWNRRFDHMQQHAGQHILSAAFAESLGYETV--SFHLGTDFLTIDLK-TPSLTPEEA 138

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
              ED  N II    P+ T+ ++RE+ I       +  + + R+ V+  E++        
Sbjct: 139 LQAEDLANKIIQDARPIETKWVSREELINYPLRKHISVEEDIRL-VIIPEFDYNA----- 192

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            CGGTH   T E+  + +      R  + R+  + G R R  L G+ E +++L S L+  
Sbjct: 193 -CGGTHPRLTSEVGTIKVFDWEKHRGNV-RLHFVCGDRVRQQLQGKHEAIRNLTSTLQSP 250

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHKIADVN--FMSHIISEVDSK 807
           +G +V   E++    +  +      K QL    ++DL  +     +  ++    +    K
Sbjct: 251 EGKLVEAAEKLLHNQKDQEKEIESLKEQLLSFELKDLVANAATKESYAYIKGAFTHRPIK 310

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           EL+++   + +     +++L   + EK   V+   +E  +D      +A+L+  ++  G 
Sbjct: 311 ELQTLAQNITEDHNQMVVVLTVQNDEKLQLVMAKGSEPAVD---IRSVAKLAFHLI-NGK 366

Query: 868 GGGRPHMAQSGG 879
           GGG+ ++ Q GG
Sbjct: 367 GGGKEYLVQGGG 378


>gi|56067679|gb|AAV70307.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 7/136 (5%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQK 548
           V A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  
Sbjct: 25  VVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYN 84

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQ 607
           +  G  +H  +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q
Sbjct: 85  RG-GYVLHIGVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQ 141

Query: 608 NGSCITPDGLRFDVTH 623
            GS + P+ LRFD T+
Sbjct: 142 RGSLVVPEKLRFDFTN 157


>gi|56067673|gb|AAV70304.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067677|gb|AAV70306.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067681|gb|AAV70308.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067683|gb|AAV70309.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067685|gb|AAV70310.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067699|gb|AAV70317.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067701|gb|AAV70318.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067705|gb|AAV70320.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067707|gb|AAV70321.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067709|gb|AAV70322.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067711|gb|AAV70323.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067717|gb|AAV70326.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067719|gb|AAV70327.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067725|gb|AAV70330.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067727|gb|AAV70331.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067737|gb|AAV70336.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067739|gb|AAV70337.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 34  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 92

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 93  GVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 150

Query: 617 LRFDVTH 623
           LRFD T+
Sbjct: 151 LRFDFTN 157


>gi|163848562|ref|YP_001636606.1| threonyl/alanyl tRNA synthetase SAD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526497|ref|YP_002570968.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus sp. Y-400-fl]
 gi|163669851|gb|ABY36217.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450376|gb|ACM54642.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus sp. Y-400-fl]
          Length = 410

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 171/384 (44%), Gaps = 44/384 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           V  DQ+ FY E GGQ  D G    A     R  + DVQ    G+  H  I+  G+   E 
Sbjct: 33  VALDQSAFYPEGGGQPADQGWLSAATDPDRRWPVIDVQSD-NGVVWH--ILATGVQLPEP 89

Query: 570 SLVLT--IDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDVT 622
             ++T  I+++ R      H   H+L  A      +  +  H+S+    I       D++
Sbjct: 90  GTIVTGQINWERRFDHMQQHCGQHILTAAFIATCNAPTVSFHLSERSVTI-------DLS 142

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             + ++  ++++ E   N  +  NLP+  R ++  +   +          +D VRVVS+ 
Sbjct: 143 IGE-LSLDQVQAAEAWANRAVWANLPIHARFVSPTE--LAQIPLRKPPTVSDAVRVVSI- 198

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
              G +  SA CGGTH + +GE+  + ++     R G+ R+E + G R  + L  +D  +
Sbjct: 199 ---GDIDHSA-CGGTHPARSGEVGAIAVLGWGRQR-GLIRVEFVCGNRVITALHERDTAV 253

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVN---FM 797
           ++ A+ L V    +   V  + E  + LQ  L   +R+L          +   VN    +
Sbjct: 254 RTAAAALSVGWAELPQTVNRLQETQQSLQRELRQTQRELDALRAAQWYAQTPPVNGRRIV 313

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           +  +   D++ L+++   +  ++  GI ++ G S+  +  +++   ED     +A D  +
Sbjct: 314 TATLPAADAERLRTIAGFI-AELPGGIAIVAGGSERPQ--IVVACAED-----SAGDARQ 365

Query: 858 LSAKVLG--GGGGGGRPHMAQSGG 879
           + A  +   GG GGG   +AQ GG
Sbjct: 366 ILAAGMAVLGGRGGGNARLAQGGG 389


>gi|56067749|gb|AAV70342.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067751|gb|AAV70343.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 7/131 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 20  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 78

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 79  GVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 136

Query: 617 LRFDVTHSKPI 627
           LRFD T+   +
Sbjct: 137 LRFDFTNKSAM 147


>gi|14591706|ref|NP_143794.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570355|sp|O57734|ALAXL_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-L; Short=AlaX-L;
           AltName: Full=Alanyl-tRNA deacylase AlaX-L
 gi|3258413|dbj|BAA31096.1| 404aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 404

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 24/244 (9%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            +IV+      +VEVV D+T FY E GGQ GD G   G+   + + D  +K   IF  H 
Sbjct: 17  AKIVDVRKEKDRVEVVLDRTIFYPEGGGQPGDRGVIKGNDFEIMVEDTIEKNGEIF--HI 74

Query: 559 IVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              RG +  E   V L +D++ R      H+  H+L   L  +    +   G  I  D  
Sbjct: 75  GKLRGEIPKEGEKVKLYLDWEWRYGNMQMHTGQHILSAVLKKLY--DLDTTGFNIFRDYA 132

Query: 618 RFDVT---HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG---TK 671
           + +V    +   I  AEL+     VN II  +LPVV   +   D +    A  L    TK
Sbjct: 133 KIEVNGEVNWDMIERAELE-----VNKIIINDLPVV---IEEYDKLPEEIALKLRKNVTK 184

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             +++R+V +    G V  +  CGGTHV ST E+ ++ ++        + RIE   G RA
Sbjct: 185 VKEKIRIVKI----GDVDVTP-CGGTHVKSTREVGIIKVLRFYKKSKNLWRIEFTCGYRA 239

Query: 732 RSHL 735
            S +
Sbjct: 240 ISKM 243


>gi|52081131|ref|YP_079922.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786509|ref|YP_092338.1| hypothetical protein BLi02774 [Bacillus licheniformis ATCC 14580]
 gi|52004342|gb|AAU24284.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349011|gb|AAU41645.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 410

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 27/374 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V ++ ++T FY   GGQ  DTG    +G+++   D   + +G   H+  VER +      
Sbjct: 33  VYIILEETAFYPTGGGQPHDTGTL--NGVKVLNVD---EIDGEIRHY--VERPLPHLNDQ 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V  ID++ R      H+  H+L  A + +   H    G  +  D +  D+  S+ +T  
Sbjct: 86  VVGVIDWERRFDHMQQHTGQHILSAAFAQLYDLHTV--GFHLGNDTVTIDLDVSE-LTEE 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
                E   N+II +N  +V + +  +D +      L   K N R+ ++  E++  G   
Sbjct: 143 MAGKAEKLANEIITENRSIVAKWVEYDDLVNYPIRKLPSVKENIRLVMID-EFDYNG--- 198

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH S+TGE+  + +++    R  I R+  + G R  +    + + +  L   L 
Sbjct: 199 ---CGGTHPSATGEVGAIKVLNWERQRKKI-RLYFVCGNRVITQFDQKQKAIVELTGLLN 254

Query: 751 VSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVD 805
             +G +   ++ + E  +KL    L   ++ LQ    +L        D   +    S+  
Sbjct: 255 RPEGELSEAIKRLLENVKKLDKALLESYEKNLQYEANELLAKSAIQNDTVMVIETFSDRS 314

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            +EL+ +   +  + +  +I  +    E      +V      ++ N  DL + +  ++ G
Sbjct: 315 IQELQKLAKMIADREKRALIFFLS---ENDHRFQLVCGRGEANKMNMRDLMQEALSLIDG 371

Query: 866 GGGGGRPHMAQSGG 879
            GGG +   AQ GG
Sbjct: 372 KGGGNK-MFAQGGG 384


>gi|56067713|gb|AAV70324.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067715|gb|AAV70325.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 146

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 20  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 78

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 79  GVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 136

Query: 617 LRFDVTH 623
           LRFD T+
Sbjct: 137 LRFDFTN 143


>gi|115648515|ref|XP_001203711.1| PREDICTED: similar to SJCHGC03396 protein, partial
           [Strongylocentrotus purpuratus]
 gi|115670729|ref|XP_795191.2| PREDICTED: similar to SJCHGC03396 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 63

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 7/64 (10%)

Query: 46  FKNIFTGQEKP------VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG 99
           FK IF G   P      + +AV + QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG
Sbjct: 1   FKPIFQGTVDPNSDLGRLARAVNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGTWSFG 59

Query: 100 GYFK 103
            YFK
Sbjct: 60  DYFK 63


>gi|56067691|gb|AAV70313.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 130

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 4   FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 62

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 63  GVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 120

Query: 617 LRFDVTH 623
           LRFD T+
Sbjct: 121 LRFDFTN 127


>gi|56067721|gb|AAV70328.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 7/127 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 21  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 79

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS + P+ 
Sbjct: 80  GVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEK 137

Query: 617 LRFDVTH 623
           LRFD T+
Sbjct: 138 LRFDFTN 144


>gi|37784136|gb|AAO83540.1| alanyl-tRNA synthetase [Hydrogenothermus marinus]
          Length = 54

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 38/53 (71%)

Query: 40 NSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          N+GMV FKN+F G EK  Y+   + QK  R  GKHNDLDNVG T RHHTFFEM
Sbjct: 1  NAGMVQFKNVFLGLEKRPYKRAASCQKVFRVSGKHNDLDNVGYTPRHHTFFEM 53


>gi|242399764|ref|YP_002995189.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
 gi|242266158|gb|ACS90840.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
          Length = 409

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 15/245 (6%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V+A V++ E     V   KV +  D+T FY E GGQ GD G   GDG R+++  V+ K E
Sbjct: 15  VRAKVEKVE-----VKDSKVRLKLDRTIFYPEGGGQPGDIGIIKGDGFRVEVEKVEGK-E 68

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I+ H   V+  I      + L +D++ R +    H+  H+L   L  +  S  +  G  
Sbjct: 69  DIW-HEGKVKGRIPEVGEEVELELDWEWRYENMRQHTGQHILSAILKKMYNSDTT--GFQ 125

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGT 670
           I P+  + ++   + +T   + + E   N+++  NLPV              A    L  
Sbjct: 126 IFPEYNKIEINFDEELTWEHILAAEFEANEVVWDNLPVEVEEYEELPEEVHNALRKDLSK 185

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
               ++R+V +   D        CGGTHV +TGE+  + +++       I RIE   G R
Sbjct: 186 NVQGKIRLVKIPNID-----LIPCGGTHVKNTGEVGFIKVLNFYKKTKNIWRIEFACGYR 240

Query: 731 ARSHL 735
           A  +L
Sbjct: 241 ALIYL 245


>gi|260588008|ref|ZP_05853921.1| putative alanyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|331082422|ref|ZP_08331548.1| hypothetical protein HMPREF0992_00472 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541535|gb|EEX22104.1| putative alanyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|330400908|gb|EGG80509.1| hypothetical protein HMPREF0992_00472 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 392

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 54/387 (13%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +G   E V D+T F+ E GGQ  DTG    +   +Q+ DVQ++  G  +H   +++ IL 
Sbjct: 25  NGNHFEAVLDRTAFFPEGGGQCADTGVLHIENREIQVFDVQER-NGEIIH--FIDKEILP 81

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLL----HHALS-TILGSHVSQNGSCITPDGLRFDV 621
            + +++  +D+Q R      H+  H++    H       +G H+ +    +  DG     
Sbjct: 82  GQ-TVIGELDFQERFSKMQQHTGEHIISGIVHRRFGYENVGFHLGKEEVTMDYDG----- 135

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------R 675
               P+T  EL+SIE   N ++A+N  +         A   G   L    Y        +
Sbjct: 136 ----PLTPEELRSIEYEANQVVAENREI--------RAYFPGTEELEKIPYRSKKELQGK 183

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R+V ++  D        C   HV +TG + L+ I +    + G+ R+    G RA    
Sbjct: 184 IRIVEIQDCD-----ICACCAPHVKTTGNVGLIKITNAIRYKGGM-RLWITCGMRALEDY 237

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-DV 794
             ++  +  +++ L   Q  V   V+ + EE ++L+   AK + +L +  L   K+    
Sbjct: 238 NQKEASVVQISNMLSAKQQEVTDAVKRLTEEIQQLKEKAAKMQERLVMGYLESEKVVLKE 297

Query: 795 NFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           N  ++++    E+D+  +++ ++A  +  +      VG  K+    VL           +
Sbjct: 298 NPNANLLLFEKELDAMAMRNFVNAGMELTKGVCGAFVGDEKQGFRYVL----------GS 347

Query: 852 AVDLARLSAKVLGG--GGGGGRPHMAQ 876
           + D+  +  K+     G GGG+P M Q
Sbjct: 348 SGDIREIGKKLNAAFQGKGGGKPPMIQ 374


>gi|170288890|ref|YP_001739128.1| threonyl/alanyl tRNA synthetase SAD [Thermotoga sp. RQ2]
 gi|33413314|emb|CAD67939.1| hypothetical protein [Thermotoga sp. RQ2]
 gi|170176393|gb|ACB09445.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga sp. RQ2]
          Length = 373

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 48/277 (17%)

Query: 508 GQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGI 564
           G+K+  V   +PFY +  GGQLGD G  IG    L++    K+  G  +H+  A +E G 
Sbjct: 15  GEKIIAVSRTSPFYTDGKGGQLGDRG-KIGPANVLKV----KEKNGYILHYLDAHLEPGE 69

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHA---------LSTILGSHVSQ---NGSCI 612
              E      ID   R+ ++  H+A H+L  A         +S ++G  VS    N   +
Sbjct: 70  YEYE------IDLARRKDIACQHTAQHILSAAFLKVADLETVSFLMGERVSTIDLNAPFV 123

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             D L               +  ED  N+++     V    + +E+A       L   + 
Sbjct: 124 LEDVL---------------EEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKLPNVE- 167

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
             +VRVV +     G      CGG HV +TGEI L+ IV    ++  + RI  + G RA 
Sbjct: 168 -GKVRVVKI-----GDFDVTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFVAGDRAL 221

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                +D+ LKSL+  L  S   ++ R E + EE ++
Sbjct: 222 KDYREKDKLLKSLSRVLTTSTKELLKRAENLLEEVKE 258


>gi|326790117|ref|YP_004307938.1| Alanyl-tRNA synthetase, class IIc [Clostridium lentocellum DSM
           5427]
 gi|326540881|gb|ADZ82740.1| Alanyl-tRNA synthetase, class IIc [Clostridium lentocellum DSM
           5427]
          Length = 382

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 122/272 (44%), Gaps = 30/272 (11%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV DQT FY E GGQ  D G   G    +++ DV+ K   I+    IVE   L    S+
Sbjct: 30  EVVLDQTAFYPEGGGQPSDEGILGG----VKVKDVRIKDHVIY---HIVE-CPLEVGSSV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKP 626
              ID+  R  +   HS  H++   ++       +G H+S+       DG          
Sbjct: 82  EGKIDFDKRFDMMQQHSGEHIISGLINKYYGYNNVGFHLSRENMTADVDG---------E 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +TS ++  IE   N+ I +N+PV   I  +E+       + +  + N+ VR+V++   D 
Sbjct: 133 LTSEQVSEIEYLANEAIYKNIPVQGAIYGQEEVREMTYRSKI--ELNEDVRLVTIPGYD- 189

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
               +  C GTHV  TGEI ++  +S    R G R   A  G+RA      + E + S  
Sbjct: 190 ----TCACCGTHVKYTGEIGMIKFISSERHRGGTRLTLA-CGKRALKDYSKKQEIVSSAM 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           + L      +   ++++ EE+ + +   A+ K
Sbjct: 245 AILSAKPEMITSHLQKLQEEFNETKFKLAEVK 276


>gi|325662129|ref|ZP_08150747.1| hypothetical protein HMPREF0490_01485 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471578|gb|EGC74798.1| hypothetical protein HMPREF0490_01485 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 326

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 133/300 (44%), Gaps = 28/300 (9%)

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           S   AIVQ     E   SG   E++ D+T F+ E GGQ  DTG   G    + ++DVQ +
Sbjct: 13  STFTAIVQ-----EVRPSGNGYEIILDRTAFFPEGGGQSSDTGSLGG----VSVSDVQ-E 62

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H+     G L     +   ID+  R      H+  H++   +  I G H    G
Sbjct: 63  IDGKIIHYT---DGPLVEGAEVEGCIDWTERFSKMQQHTGEHIVSGLIHKIYGYH--NVG 117

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  D +  D     P    +L  IE   N+ +A+NLPV  +++   D   S  +    
Sbjct: 118 FHLGTDSVTLDFNGVVP--KEKLHEIEQLANEAVAKNLPV--QVLYPTDEELSKISYRSK 173

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            +   +VR+V +   DG  +    C   HV  TGEI L+ +V   + + G+ RI  + G 
Sbjct: 174 IEIEGQVRIVVI---DG--YDVCACCAPHVKQTGEIGLIKLVGMQNYKGGV-RISMLCGF 227

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE--YRKLQLIHAKRK-LQLNVEDL 786
           RA      +++  + +A  L   +      VE + EE   +K ++   ++K L+  VE L
Sbjct: 228 RALEDYYQKEKNNREIAVMLSAKEYETAVEVERLQEELAMKKAKIAELEQKFLEQKVETL 287


>gi|323489249|ref|ZP_08094481.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323397136|gb|EGA89950.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 393

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 154/377 (40%), Gaps = 45/377 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQ+ FY E GGQ  DTG  IG     ++ DVQ   +G   H+   E   L  E   V
Sbjct: 31  VVLDQSCFYPEGGGQPADTG-EIGPA---KVWDVQL-IDGEIRHYTDRE---LEKE-RFV 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILG-----SHVSQNGSCITPDGLRFDVTHSKPI 627
             +D Q R      H+  HLL        G      H+ +    I  D    D       
Sbjct: 82  AQLDEQRRWDHMQQHAGQHLLSALFEDTYGLKTQSFHLGKERVTIDLD---LDTA----- 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDG 686
           T  +++ IE   N++I Q LP+ TR +  E A       L      D  +R+V +E    
Sbjct: 134 TKEQIQVIEKKANELIGQALPISTRWVTSEKA---DTLKLRKPPVVDGEIRLVEIE---- 186

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G+  +A CGGTH  +T EI LL I+S    + G+ R+  + G RA  +     E    L 
Sbjct: 187 GIDLNA-CGGTHPKNTAEIGLLKIISTEKSKGGM-RVYFLCGDRALQYFNFLSETTDQLV 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-- 804
             L      +   VE +  +  K  +    + LQ  + +L    I   N   H+I EV  
Sbjct: 245 VKLNAPAAELTQAVETLLAD--KATMSKTIKSLQEQLLNLEAKTIVPEN---HLIQEVFE 299

Query: 805 --DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
               KEL+ +   +  +  + I + +  S E     +    ED L     V L +L   V
Sbjct: 300 NRSIKELQQLARLVISEHPTAIALFIS-STEGDMRFVCAKGEDALGDMREV-LKQLL--V 355

Query: 863 LGGGGGGGRPHMAQSGG 879
           L  G GGG    AQ GG
Sbjct: 356 LTDGKGGGNVQFAQGGG 372


>gi|157363421|ref|YP_001470188.1| threonyl/alanyl tRNA synthetase SAD [Thermotoga lettingae TMO]
 gi|157314025|gb|ABV33124.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga lettingae TMO]
          Length = 369

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 35/291 (12%)

Query: 516 DQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLV 572
           +++PFY +  GGQLGD G  I   + L +    ++ EG+  H   A VE G         
Sbjct: 19  EKSPFYPDGKGGQLGDRG-KIDTALVLGV----EEREGLICHILDAPVEPG------EHT 67

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKPI 627
             IDY  R+ ++I HSA H+L  +   +     L  H+ +  S I  D           I
Sbjct: 68  FEIDYLRRKDIAIQHSAQHILSASFLRVADIQTLSFHMGEEFSTIDLD--------VPQI 119

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T   L+ +E+  N+I+   + V     N E A        L  K  + VRVV +    G 
Sbjct: 120 TEVVLQEVEEMANEIVRSCIKVEIVETNIESAKNLNLRKSLSEKVGEIVRVVKI----GD 175

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
              SA C G HVS+TG+I ++ IVS   ++  + R+  + G RA      +   L+ L++
Sbjct: 176 FDLSA-CAGFHVSNTGKIGIIKIVSWEKVKKTLTRVYFLAGNRALRDYSIRVSVLRELST 234

Query: 748 FLKVSQGNVVGRVEEIWEEYR-KLQLIH--AKRKLQLNVEDLSCHKIADVN 795
            L  S   +  R   + E+ + +  LI+  ++   +   +DL  HKI  +N
Sbjct: 235 LLTSSVSEMPARTRILLEKVKDQAALINRISEEYAKYLSKDLETHKIKGIN 285


>gi|302337401|ref|YP_003802607.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta smaragdinae DSM
           11293]
 gi|301634586|gb|ADK80013.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta smaragdinae DSM
           11293]
          Length = 391

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 162/373 (43%), Gaps = 29/373 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T FY E GGQ  DTG  IG+   L +  V     G  V H +  R     E  +
Sbjct: 30  EVLLDKTQFYPEGGGQPSDTGW-IGEQPLLDVKKV-----GSDVVHLLQNRP---AEGPV 80

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  +D+ +R      H+A H+L   L    G  ++     +  D L  +V   + I    
Sbjct: 81  LCRLDWNHRFDYMQQHTAQHILSAVLYREFG--INTLAVHLGEDFLTIEVDREE-IDEGV 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ ++    +++ +NLP+ T     ++ +AS        K +  +R+V +     G + +
Sbjct: 138 LEKVDFLAQELVCRNLPIET-FWTDDEKVASFDLRRT-PKVSGHIRIVRL-----GNYDA 190

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGG H S TGE++L+       IR G  RI+   G RA      + E +  L     V
Sbjct: 191 VACGGVHCSKTGEVLLIRRCGVERIR-GHMRIQWKAGGRAFRDYGEKMELVTRLCELNSV 249

Query: 752 SQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVE--DLSCHKIADVNFMSHIISEVDSKE 808
               +  R  ++  E ++L++ I + R+ Q   E  +LS  + A  +F+S      +   
Sbjct: 250 KSDELEERSRQLIAEQQRLKVTIESLRREQAAAEARNLS-EQAAKASFLSRTFVGQEKDF 308

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L++V DAL    +  +++ +    E     L+     L   FN +    LSA     G G
Sbjct: 309 LRNVADALTG--EKPLLVALTNKTENGVQWLVAALGGLDFPFNELRKELLSAI---DGKG 363

Query: 869 GGRPHMAQSGGPN 881
           GG+  M Q  G N
Sbjct: 364 GGKAPMWQGIGSN 376


>gi|260187570|ref|ZP_05765044.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
          Length = 87

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 17  KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHND 76
           K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QKC+R      D
Sbjct: 2   KAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQKCIRT----PD 56

Query: 77  LDNVGRTNRHHTFFEMLGNFSFGGYFKERA 106
           +D VG T RH+TFF     F     F+ R 
Sbjct: 57  IDEVGITTRHNTFFSDGPQFQLRRLFQTRG 86


>gi|83816272|ref|YP_445267.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757666|gb|ABC45779.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 260

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 99/218 (45%), Gaps = 16/218 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D T FY E GGQ  D G    DG    + DVQK+     V H I +R   R E    
Sbjct: 48  IVLDGTYFYPEGGGQPADHGTLHWDGGSAPVVDVQKEHGA--VRHYIDDREGERPEQGDE 105

Query: 573 LT--IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            T  ID   RR L   H+A H+L   +  + G+  +  G+ I  D  R D   +   +  
Sbjct: 106 ATGQIDEARRRTLRRMHTAQHVLSKVVLDVFGAQTA--GNQIHTDRSRIDFEPAD-FSEE 162

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAAL-LGTKYNDRVRVVSVEYEDG 686
           ++  IE+  N  I Q+LPV  + M R   E+    G   L L   + D +R+V +     
Sbjct: 163 DVAVIEERTNTAIEQDLPVEKKEMERARAEEHTPEGRGLLNLIPDHVDPLRMVQI----- 217

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           G      CGGTHV  T +I  + I + +S  A + RIE
Sbjct: 218 GDLDLCPCGGTHVDRTRDIGRIRITNRTSKGAEVDRIE 255


>gi|159901144|ref|YP_001547391.1| threonyl/alanyl tRNA synthetase SAD [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894183|gb|ABX07263.1| Threonyl/alanyl tRNA synthetase SAD [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 387

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 165/391 (42%), Gaps = 39/391 (9%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + V+  +  V  D++ FY E GGQ  D G   G    + + DVQ     +  H   
Sbjct: 15  EWSAQIVARDQQRVALDRSAFYPEGGGQPADHGWING----VAVVDVQADDHDLVWH--- 67

Query: 560 VERGILRTEM---SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                L   +   S+   +D+Q R      H   HLL  A   +        G  ++ + 
Sbjct: 68  ----TLAAPIDSDSVECRLDWQRRFDHMQQHHGQHLLSAAFDQLFNWRTV--GFHLSSEY 121

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           +  D+   +   S +L   E   N +I QNLP++ R ++ E+   +  A          +
Sbjct: 122 VTIDLATGEA-DSEQLGEAETLANQVIWQNLPILARFVSAEE--LATLALRKAPSVTGAI 178

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVVS    D   HS+  CGGTH ++TG +  ++I   S  R    RIE + G RA   L 
Sbjct: 179 RVVSAGDFD---HSA--CGGTHPNATGAVGQIHI-RRSEKRGESVRIEFVCGGRALQDLR 232

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADV 794
            ++  L  +A+   V+Q      +E + E+ +++  Q   A+++L L  E  +  + A  
Sbjct: 233 WKNAALGRIAAGFSVAQPQAEQAIERLREQEQQVRKQFQQAEQQL-LEFEAKALVEQAQR 291

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
                ++++V  +E ++V        Q+G + L G++  K    LI   + L       D
Sbjct: 292 IGQLKVVAQVWLREPQTVRQLANLVAQAGGVALFGVAASKPQ--LIFAGQGL-------D 342

Query: 855 LARLSAKVLG--GGGGGGRPHMAQSGGPNGN 883
              +  +V+   GG GGG    AQ G    N
Sbjct: 343 CGAILRQVVAAFGGKGGGSVQQAQGGIAEAN 373


>gi|167772611|ref|ZP_02444664.1| hypothetical protein ANACOL_03990 [Anaerotruncus colihominis DSM
           17241]
 gi|167665089|gb|EDS09219.1| hypothetical protein ANACOL_03990 [Anaerotruncus colihominis DSM
           17241]
          Length = 391

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 170/393 (43%), Gaps = 53/393 (13%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A+V   E++ +A S     V  D+T FY E GGQ GDTG A+G G+R  + D Q   +G 
Sbjct: 23  AVVTACEMIVDAWS-----VTLDRTAFYPEGGGQPGDTG-ALG-GVR--VCDTQDGPDGE 73

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             H   +  G L    ++   ID+  R     +H+  H+L   L ++ G  V   G  + 
Sbjct: 74  IRH---ITDGPLAVGTAVHGQIDWPVRFSHMQHHTGEHILSGLLHSLYG--VDNVGFHMG 128

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-Y 672
            D +  D+  S+ ++  EL   E   N+ + +++PV  RI    DA A  A A    K  
Sbjct: 129 RDTVTIDL--SRELSWDELLRAEQLANETVWRDVPV--RI-EYPDAGALAALAYRSKKAL 183

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           +  VR+V+V   D        C GTH + TGE+ ++ ++S    + G  R+    G RA 
Sbjct: 184 SGAVRIVTVPGAD-----VCACCGTHTARTGEVGIIKLLSAQRYKGGT-RVWLCCGGRAL 237

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKRKLQLNVEDLSCHKI 791
                ++  + ++++ L    G V G    +  E   L Q + A R+             
Sbjct: 238 KDYEAKNASVHAISALLSAKPGEVAGAAARMQRENEALRQRLSALRR------------- 284

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                 ++   EV+     +V+   ++ ++   +  + ++   +  V  V+     DR++
Sbjct: 285 ---QLFAYRAKEVEQGARCAVL--FEEAMEPADLRHLCMALTSRCGVATVLAGGEGDRWS 339

Query: 852 -AVDLARLSAKVLGG-------GGGGGRPHMAQ 876
            AV   +   + LG        G GGG+P + Q
Sbjct: 340 YAVGSEQTDVRPLGAALNETFDGRGGGKPGLVQ 372


>gi|15644472|ref|NP_229524.1| alanyl-tRNA synthetase-related protein [Thermotoga maritima MSB8]
 gi|4982303|gb|AAD36791.1|AE001812_1 alanyl-tRNA synthetase-related protein [Thermotoga maritima MSB8]
          Length = 373

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 34/270 (12%)

Query: 508 GQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGI 564
           G+K+  V   +PFY +  GGQLGD G  IG    L++    K+  G  +H+  A +E G 
Sbjct: 15  GEKIIAVSRTSPFYPDGKGGQLGDRG-KIGPANVLKV----KEKNGYILHYLDAHLEPGD 69

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRF 619
              E      ID   R+ ++  H+A H+L  A   +     +  H+ +  S I       
Sbjct: 70  YECE------IDPARRKDIACQHTAQHILSAAFLKVADLETVSFHMGERVSTID------ 117

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
              ++  +    L+  ED  N+++     V    + +E+A       L   +   +VRVV
Sbjct: 118 --LNAPFVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKLPNVE--GKVRVV 173

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G      CGG HV +TGEI L+ IV    ++  + RI    G RA      +D
Sbjct: 174 KI-----GDFDVTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFTAGDRALKDYREKD 228

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + LKSL+  L  S   ++ R E + EE ++
Sbjct: 229 KLLKSLSRVLTTSTKELLKRAENLLEEVKE 258


>gi|17545707|ref|NP_519109.1| hypothetical protein RSc0988 [Ralstonia solanacearum GMI1000]
 gi|17428001|emb|CAD14690.1| probable threonyl/alanyl trna synthetase protein [Ralstonia
           solanacearum GMI1000]
          Length = 245

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 39/247 (15%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVER- 562
           AV  + +E+  DQT FYA  GGQ GDTG  I  DG  + I D    A+ + + H   +  
Sbjct: 22  AVHPEGIEL--DQTVFYARGGGQAGDTGTLILPDGQTVAIADTVYHADRLAILHVPADPA 79

Query: 563 --GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G+L   + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 80  NLGLLAPGLPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYN 673
                P ++ E +++   +N +IA++ PV   ++  E   A        GAA   G    
Sbjct: 134 F--DLPESTLERETLTAQLNALIARDTPVRIALITPEALAAQPQLVRTIGAAPPAGVS-- 189

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +R+V ++    G+     CGGTHV +TGEI           RA + +IE  + Q  R 
Sbjct: 190 -AIRIVEID----GIDRQP-CGGTHVRATGEIG----------RATVTKIEKKSRQNRRV 233

Query: 734 HLMGQDE 740
            +   DE
Sbjct: 234 VVALADE 240


>gi|304391378|ref|ZP_07373320.1| threonyl/alanyl tRNA synthetase SAD [Ahrensia sp. R2A130]
 gi|303295607|gb|EFL89965.1| threonyl/alanyl tRNA synthetase SAD [Ahrensia sp. R2A130]
          Length = 242

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 117/229 (51%), Gaps = 30/229 (13%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEG 552
           A  Q  + V  AVS   +E   DQT FYA +GGQ GD+G     DG ++ IT V + A+G
Sbjct: 10  AYAQTCDAVVVAVSADGIE--LDQTVFYATSGGQPGDSGFLERADGSQIVITGV-RYADG 66

Query: 553 --IFVHHAIVERGILRTEM--SLVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQ 607
             I + H I E G    ++   L+  ID++ R +L   H+A HLL  AL   I G+ VS+
Sbjct: 67  SKITILHEI-EDGAALPDVGEKLIAHIDWERRHRLMRMHTACHLLSVALPLPITGAAVSE 125

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
             S I      FD+T +     AEL +    + +++  N  V TR +  ++  A+    L
Sbjct: 126 TDSRID-----FDMTETA--DKAELTA---KLMELVEGNHSVFTRWITPDELAAN--PGL 173

Query: 668 LGTKYN------DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           + +K        DR+R+V +   D  V  S  CGGTHVS TGEI  ++I
Sbjct: 174 VKSKNVRPPTGVDRIRLVCIG--DDAVVDSQPCGGTHVSETGEIGEIHI 220


>gi|225568685|ref|ZP_03777710.1| hypothetical protein CLOHYLEM_04763 [Clostridium hylemonae DSM
           15053]
 gi|225162184|gb|EEG74803.1| hypothetical protein CLOHYLEM_04763 [Clostridium hylemonae DSM
           15053]
          Length = 385

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 161/380 (42%), Gaps = 50/380 (13%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G++ ++V D+T F+ E GGQ  DTG  IG G+R  +TD  +K EG+  H A    G L  
Sbjct: 26  GEQYKIVLDETAFFPEGGGQYADTG-WIG-GVR--VTDAHEK-EGVIFHTA---GGPLVP 77

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +  TID+  R +    HS  H++   +    G      G  +  D    D   + PI
Sbjct: 78  GTKVKGTIDWDERFEKMQQHSGEHIVSGLIHQKFG--YDNVGFHLGSDYCTLDF--NGPI 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  EL  IE   N+ + +NL +     ++E+       + +  +   +VR+V+V   D  
Sbjct: 134 TREELCGIETMANEAVFRNLDIQVSYPSKEELEHIDYRSKI--EIEGQVRIVTVPGYD-- 189

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C   H+  TGEI L+ +    + + G  RI  + G RA      ++  +K++++
Sbjct: 190 ---VCACCAPHMDKTGEIGLIKLTDMVNYKGG-ERISMLCGFRALRDYRQKECNVKAISA 245

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS----E 803
            L   +      V  + EE      +  K K+    + +  +K A+++    + +    E
Sbjct: 246 LLCAREEETAEAVGHLKEEQ-----VRQKGKIASLQQKMLTYKAAEISTDGAVAAVFDPE 300

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-------LLDRFNAVDLA 856
           +     + +M+ L  +      +L G  +E    V+   TED       L DRF+     
Sbjct: 301 LSGNGPRELMNLLLDRGARVCAVLAGTDEEGYRYVIGSRTEDVRQLCRELNDRFS----- 355

Query: 857 RLSAKVLGGGGGGGRPHMAQ 876
                    G GGG+P M Q
Sbjct: 356 ---------GKGGGKPEMVQ 366


>gi|313125945|ref|YP_004036215.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312292310|gb|ADQ66770.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 400

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 121/274 (44%), Gaps = 27/274 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V  DQT FYAE+GGQ  D G   G    + + DVQK  +G  VH           E ++
Sbjct: 25  DVTLDQTYFYAESGGQPADRGTLGG----IPLDDVQK-VDGNVVHTLASAPDFDEGE-TI 78

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID   R      H+A+H+L+ A   IL S +   G  I+P+ +R D   +  I    
Sbjct: 79  TGVIDDDFRTYCMRAHTASHVLYGAGRRIL-SDLGYGGFDISPEKVRVDFVTTTEIDDEV 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVRVVSVEYE 684
           L  +E  VN  +    PV    +  E+A      A   TK        +D +R+V+VE  
Sbjct: 138 LVELERLVNRAVWDARPVSWEEVPAEEAFERDDVAF-NTKTEEGVMGDSDTIRLVTVEDW 196

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-----QRARSHLMGQD 739
           D      A CGGTHVS+T EI  + ++  S+   G+ R+E   G     +RA  H    D
Sbjct: 197 D-----VAACGGTHVSNTLEIGPVTVLGRSNPGEGLTRVEFAVGPTGIDRRATVHRAALD 251

Query: 740 EKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQ 771
              +   S    ++     R E+  I  E RKL+
Sbjct: 252 TACELETSVDDTAEAAASLRAEKQSIEAERRKLE 285


>gi|323702819|ref|ZP_08114478.1| Threonyl/alanyl tRNA synthetase SAD [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532207|gb|EGB22087.1| Threonyl/alanyl tRNA synthetase SAD [Desulfotomaculum nigrificans
           DSM 574]
          Length = 400

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 35/273 (12%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K+ V+ + T FY E GGQ  D G  +      ++  V+++ EGI   H +    +     
Sbjct: 26  KMGVLLENTIFYPEGGGQPSDRGTMVSARRCYEVVHVEQRPEGIV--HWLAGTSVPENGA 83

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCITPDGLRFD 620
           S++++ID  +RRQ   +H   H   H +S I         +G H+ +  S I       D
Sbjct: 84  SVLMSID-ADRRQ---DHMQQHHGQHIISAIFEQKYGWDTVGFHLGEETSTI-------D 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND--RVRV 678
           +T  K I    L+ +E+  N ++ +NLPV     +RE        ALL     D  +VR+
Sbjct: 133 LTTDK-IPLHVLQEVEEEANRVVMENLPVKIETYDREQL----NPALLKKVPPDQEKVRL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V++     G+  +A C GTH  +TGE+  + ++    +R G  R+  I G R    +   
Sbjct: 188 VTI----SGIDENACC-GTHPRATGEVGPVKLLKTEKVR-GNTRLHFICGLRTIRWIRQT 241

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E L+S+   +       + R+     E +KLQ
Sbjct: 242 AETLRSIEDAVGAVGSEAITRINNREAELKKLQ 274


>gi|295103797|emb|CBL01341.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Faecalibacterium prausnitzii
           SL3/3]
          Length = 396

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +  D T FY E GGQ  D G   + DG  L+++DV ++A GI  H             ++
Sbjct: 35  IALDGTVFYPEGGGQPADRGTLTLPDGTVLRVSDVHEQA-GIIWHTVDALPAAAAPGAAV 93

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      H+  H+L   L  + G+     G  +  + +R D   S PI+   
Sbjct: 94  AGCIDWDWRFDKMQQHTGEHILSGILHQMFGAE--NVGFHVGTEVVRMDT--SVPISPEG 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK--YNDRVRVVSVEYEDGGVH 689
           L+  E   N I+ Q++PV+     RE+     AA +  +K     +VR+V++   D    
Sbjct: 150 LRQAELAANRIVWQDVPVLISYPTREEL----AALVYRSKKEIEGQVRIVTIPGAD---- 201

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               C GTH  +TG++  + I++  + + G+ R+  + G RA +       +   + + L
Sbjct: 202 -VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCGARALAAAQAMRARQAEIGALL 259

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIH 774
                     V  +++EY  L+  H
Sbjct: 260 SAKADQTAVAVHRVYDEYTALKFTH 284


>gi|294507136|ref|YP_003571194.1| Alanyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294343464|emb|CBH24242.1| Alanyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 240

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 99/218 (45%), Gaps = 16/218 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D T FY E GGQ  D G    DG    + DVQK+     V H I +R   R E    
Sbjct: 28  IVLDGTYFYPEGGGQPADHGTLHWDGGSAPVVDVQKEHGA--VRHYIDDREGERPEQGDE 85

Query: 573 LT--IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            T  ID   RR L   H+A H+L   +  + G+  +  G+ I  D  R D   +   +  
Sbjct: 86  ATGQIDEARRRTLRRMHTAQHVLSKVVLDVFGAQTA--GNQIHTDRSRIDFEPAD-FSEE 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAAL-LGTKYNDRVRVVSVEYEDG 686
           ++  IE+  N  I Q+LPV  + M R   E+    G   L L   + D +R+V +     
Sbjct: 143 DVAVIEERTNTAIEQDLPVEKKEMERARAEEHTPEGRGLLNLIPDHVDPLRMVQI----- 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           G      CGGTHV  T +I  + I + +S  A + RIE
Sbjct: 198 GDLDLCPCGGTHVDRTRDIGRIRITNRTSKGAEVDRIE 235


>gi|322368847|ref|ZP_08043414.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320551578|gb|EFW93225.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 396

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 168/368 (45%), Gaps = 43/368 (11%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A+ G+ V     +T FYAE+GGQ  D G   G    + + DVQK+ +G  VH    +   
Sbjct: 19  AIDGRNVS--LSETYFYAESGGQPADRGTLGG----ISVVDVQKR-DGDVVHTLETDPEF 71

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
              E  +   +D + R     +H+A+H+L+ A   IL   +   G  I  + +R D   S
Sbjct: 72  EEGE-EIRGQVDEEFRTYCMRSHTASHVLYGAGRLIL-DDLGYGGFDIGEEKIRVDFQTS 129

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVR 677
             I    L  +E   N  +  +LPV    + +E+A+A    A   TK        ++ VR
Sbjct: 130 TDIDDDVLVELERLTNRAVWDSLPVSWEAVPKEEALAREDIAF-NTKTEEGVLSGSETVR 188

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLM 736
           VV +E  D      A CGGTHV +T EI  + IV  S+   G+ R+E   G  A R+   
Sbjct: 189 VVDIEGWD-----VAACGGTHVENTREIGPVTIVDRSNPGEGMTRVEFAVGPPAIRTR-- 241

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------QLIHAKRKL-QLNVEDL 786
             DEK  +LA+      G     VE++ +E  +L         +L  AK +L    +++L
Sbjct: 242 -ADEKRSALAAARIAGTG-----VEDLPDEIDRLTGEIDALETELADAKSRLVGATIDEL 295

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +   +A  N    ++  +D      + D + +++      +V ++ ++ ++ L+V T+  
Sbjct: 296 AEETVA-RNGHEWLVGTIDGVGPNELSDRV-RELAGETADVVALTGKEGSTFLVVGTDGD 353

Query: 847 LDRFNAVD 854
           ++  + VD
Sbjct: 354 VEAGDVVD 361


>gi|154249461|ref|YP_001410286.1| threonyl/alanyl tRNA synthetase SAD [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153397|gb|ABS60629.1| Threonyl/alanyl tRNA synthetase SAD [Fervidobacterium nodosum
           Rt17-B1]
          Length = 373

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 32/267 (11%)

Query: 518 TPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGILRTEMSLVLT 574
           +PFY +  GGQLGD G   G     ++  V++  E I +H     +E GI   +      
Sbjct: 31  SPFYPDWKGGQLGDRGFING----AKVLSVKETEEWI-IHELDKPIELGIYEVQ------ 79

Query: 575 IDYQNRRQLSINHSATHLL-----HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ID   R+ ++  H+  H+L     H A    +G H+ +  S I       D+ + +P   
Sbjct: 80  IDENRRKDIAQQHTGQHILSAAFIHVAEIETVGFHMGEEYSTID-----LDIPYIEPDV- 133

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             L  +E+  N II  N+ +   I +   A        L  K  + VR++ +     G  
Sbjct: 134 --LNEVEELSNQIIQSNIQIEEIITDVNGANTYPLRKKLSDKIKEEVRLIKI-----GDF 186

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             + CGG H   TGE+ L+ I+    ++  + R+ A++G RA  +    +  LK L+  L
Sbjct: 187 DISACGGFHTDYTGEVGLIKIIDTEKVKGNLTRVYAVSGMRALKYFQKYNSVLKDLSKLL 246

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             S   +  R +++  + R+  L  +K
Sbjct: 247 TSSIDELNLRTQKLLNQVREQALTLSK 273


>gi|310644107|ref|YP_003948865.1| threonyl/alanyl tRNA synthetase sad [Paenibacillus polymyxa SC2]
 gi|309249057|gb|ADO58624.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus polymyxa SC2]
          Length = 391

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 164/378 (43%), Gaps = 50/378 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG     GIR  + DV  + +G   H   VER  L  E  + 
Sbjct: 31  VMLEETAFYPHGGGQPCDTGTI--QGIR--VLDVFLE-DGDIWHQ--VER--LPNEGKVA 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTHSKPI 627
             +D++ R      HS  HLL      +LG+     H+ Q  + I       DV  S+ +
Sbjct: 82  CQLDWERRFDHMQQHSGQHLLSAVCLVLLGARTESFHLGQEYATI-------DVNCSE-V 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           TSA+L +IE  VN  I  N  + +  +  E         +   K  + +R+V +E    G
Sbjct: 134 TSAQLSAIEQEVNQQIYNNRSIKSYFVTHEQWKDIPLVKM--PKVTENIRIVEIE----G 187

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +  +A CGGTHV+ TGEI ++  +     + G+ RI    G RA          L  L++
Sbjct: 188 IEYNA-CGGTHVAQTGEIGMIKCLKWEK-QKGMARIHFKCGARALHDFNDSVRILDVLSA 245

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
                + +++ R E+  +E+++L     K +++L  E+ + ++  +      ++S V   
Sbjct: 246 KFNTGRKDILTRFEKWEQEHKQL-----KAQVELLQEENASYQAKE------LLSAVQGH 294

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-----LLDRFNAVDLARLSAKV 862
            L  V +  QK IQ    +   ++ E    VL   T +       +   +V       + 
Sbjct: 295 VLAYVFE--QKSIQEMQQLAAKLTAEHDLLVLFATTAENKIILAHNGTQSVSCGAFLKEN 352

Query: 863 LGG--GGGGGRPHMAQSG 878
           LG   G GGG    AQ+ 
Sbjct: 353 LGAFQGKGGGSNQSAQAA 370


>gi|308070856|ref|YP_003872461.1| Predicted metal-dependent hydrolase [Paenibacillus polymyxa E681]
 gi|305860135|gb|ADM71923.1| Predicted metal-dependent hydrolase [Paenibacillus polymyxa E681]
          Length = 391

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 168/381 (44%), Gaps = 44/381 (11%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K  V+ ++T FY   GGQ  DTG   G    +++ DV  + +G   H   VER  L  + 
Sbjct: 28  KYLVMLEETAFYPHGGGQPCDTGTIQG----VRVLDVVLE-DGDIWHQ--VER--LPEDR 78

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTHS 624
            +   +D++ R      HS  HLL      +LG+     H+ Q  + I       DV  S
Sbjct: 79  KVACQLDWERRFDHMQQHSGQHLLSAVCLELLGARTESFHLGQEYATI-------DVNCS 131

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             IT A+L +IE  VN  I  N  + +  +  E         +   K  + +R+V +E  
Sbjct: 132 D-ITPAQLSAIEQEVNQQIYSNRSIKSYFVTHEQL--QDIPLVKTPKVTEDIRIVEIE-- 186

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G+  +A CGGTHV+ TGEI ++  +     + G+ RI    G RA        + L  
Sbjct: 187 --GIEYNA-CGGTHVAQTGEIGIIKCLKWEK-QKGMARIHFKCGARALQDFNDSVQILDV 242

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMSHIIS 802
           L++     + +++ R E+  +E+++L     K +++L  E+ + ++  ++      H+++
Sbjct: 243 LSTKFNTGRKDILTRFEKWEQEHKQL-----KAQVELLQEENASYQAKELLSAVQGHVLA 297

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            V  ++    M  L  K+ +   +LV  +   +  +L+       +   +V       + 
Sbjct: 298 HVFEQKSLQDMQQLATKLTAEHDLLVLFATTAENKILLA-----HNGTQSVACGAFLKEN 352

Query: 863 LGG--GGGGGRPHMAQSGGPN 881
           LG   G GGG    AQ+  P+
Sbjct: 353 LGAFHGKGGGSNQSAQAAFPS 373


>gi|255656151|ref|ZP_05401560.1| putative RNA-binding protein [Clostridium difficile QCD-23m63]
 gi|296450416|ref|ZP_06892172.1| DHHA1 domain protein [Clostridium difficile NAP08]
 gi|296879461|ref|ZP_06903455.1| DHHA1 domain protein [Clostridium difficile NAP07]
 gi|296260677|gb|EFH07516.1| DHHA1 domain protein [Clostridium difficile NAP08]
 gi|296429607|gb|EFH15460.1| DHHA1 domain protein [Clostridium difficile NAP07]
          Length = 399

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 176/397 (44%), Gaps = 44/397 (11%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHH 557
            EIVE      K  V+ D+T F+   GGQ  D G       ++   DV     EG  V+H
Sbjct: 16  AEIVEIKEVENKFHVLLDKTAFFPGGGGQFADLG-------KIDNYDVISVYEEGKKVYH 68

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCI 612
            + ++ I    +    +ID+  R      H   H+L         +   G H+    S +
Sbjct: 69  VLDKKPIKIHRVK--CSIDWNRREDGMHQHFGQHVLSGCFFKTFNANTTGFHLGSEYSTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +G          +   +++ IE   N+II QN+ V T +  +++         L    
Sbjct: 127 DIEG---------NLDEDKIREIELLSNEIIRQNIQVETLLPTKKELKKIWLRRDLPNT- 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +RVV +    G + ++A C G H  +TGE+ ++ I      ++   RIE + G+RA 
Sbjct: 177 DEEIRVVKI----GDLDTNACC-GVHPKATGELRMIKIKKWEKHKSST-RIEFLAGKRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVED 785
             ++ +D  L  +  +L  ++ + +        +VEE+  + R+L+ + +  +++  +E 
Sbjct: 231 DDILKRDIYLTKICRYLSCNEEDAINGIVNLNSKVEEVLIKKRRLEEVVSTYQVKEMIE- 289

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              +KI +++ +  I  + D K +  + + + +      I L+ +    K +++   +++
Sbjct: 290 -KANKIGNISVVKKIYEDEDLKYVNKIANKITE--HENNIALLAVKFNDKINLVFACSKN 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L D  N   L + +  ++ G GGG +  +AQ GG N 
Sbjct: 347 LKD-INMGVLLKDAISLIDGKGGGSKI-LAQGGGKNN 381


>gi|328880598|emb|CCA53837.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 192

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 60/91 (65%), Gaps = 5/91 (5%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDH 278
           LP+ ++DTG+GLER+A++LQ K++ +D D+F    +    +  ++       + R++ DH
Sbjct: 15  LPQRNVDTGLGLERLASLLQGKSSVFDCDVFDPWRRLLPGLWPLEE-----TSLRLVSDH 69

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           LRS+  +I DG+ P   GRGYVLRR++RR +
Sbjct: 70  LRSAVVVIGDGVRPGATGRGYVLRRLIRRVL 100


>gi|114707282|ref|ZP_01440179.1| Alanyl-transfer RNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537163|gb|EAU40290.1| Alanyl-transfer RNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 253

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 20/206 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM-- 569
           +VFD+T FYA  GGQ GD G     DG ++QI +    +    V     E  +L  E+  
Sbjct: 38  LVFDRTNFYATGGGQPGDRGFVEQSDGTKIQIVETAYSSNARDVVMFAGESALL-PELGE 96

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           +L L ID++ R +L   H+A HLL       I G+ V +  S I      FD     P  
Sbjct: 97  TLTLHIDWKRRYKLMRMHTACHLLSVVCPYPITGAAVGEEESRID-----FDW----PEA 147

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
           +AE ++I + V +I+A N PV T+ +   +  A+     +A +   K    +R+V +  E
Sbjct: 148 AAEKQAISERVMEIVAANHPVFTKTITEAELEATPGLVKSANVKPPKGTCVIRLVCIG-E 206

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYI 710
           +  V +   CGGTHVS TGE+  ++I
Sbjct: 207 NSSVDAQP-CGGTHVSETGEVGEVHI 231


>gi|17987215|ref|NP_539849.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23501932|ref|NP_698059.1| hypothetical protein BR1054 [Brucella suis 1330]
 gi|62289975|ref|YP_221768.1| hypothetical protein BruAb1_1059 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699903|ref|YP_414477.1| alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus
           2308]
 gi|161619004|ref|YP_001592891.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843321|ref|YP_001627725.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189024217|ref|YP_001934985.1| Alanyl-transfer RNA synthetase [Brucella abortus S19]
 gi|225627528|ref|ZP_03785565.1| Alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225852557|ref|YP_002732790.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|237815478|ref|ZP_04594476.1| Alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|254689282|ref|ZP_05152536.1| Alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693766|ref|ZP_05155594.1| Alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|254697419|ref|ZP_05159247.1| Alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701801|ref|ZP_05163629.1| Alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|254704343|ref|ZP_05166171.1| Alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254706757|ref|ZP_05168585.1| Alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254710136|ref|ZP_05171947.1| Alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714135|ref|ZP_05175946.1| Alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716807|ref|ZP_05178618.1| Alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|254730317|ref|ZP_05188895.1| Alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256031631|ref|ZP_05445245.1| Alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256044713|ref|ZP_05447617.1| Alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113605|ref|ZP_05454425.1| Alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|256159773|ref|ZP_05457516.1| Alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255031|ref|ZP_05460567.1| Alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|256257532|ref|ZP_05463068.1| Alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|256263952|ref|ZP_05466484.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369479|ref|YP_003106987.1| hypothetical protein BMI_I1059 [Brucella microti CCM 4915]
 gi|260168760|ref|ZP_05755571.1| hypothetical protein BruF5_10408 [Brucella sp. F5/99]
 gi|260545278|ref|ZP_05821019.1| alanyl-transfer RNA synthetase [Brucella abortus NCTC 8038]
 gi|260564056|ref|ZP_05834542.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260566409|ref|ZP_05836879.1| alanyl-transfer RNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260754791|ref|ZP_05867139.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 6 str.
           870]
 gi|260758014|ref|ZP_05870362.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 4 str.
           292]
 gi|260761837|ref|ZP_05874180.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883808|ref|ZP_05895422.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 9 str.
           C68]
 gi|261214042|ref|ZP_05928323.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218606|ref|ZP_05932887.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M13/05/1]
 gi|261222223|ref|ZP_05936504.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti B1/94]
 gi|261314219|ref|ZP_05953416.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M163/99/10]
 gi|261317689|ref|ZP_05956886.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis B2/94]
 gi|261321897|ref|ZP_05961094.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M644/93/1]
 gi|261752358|ref|ZP_05996067.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 5 str. 513]
 gi|261755016|ref|ZP_05998725.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 3 str. 686]
 gi|261758241|ref|ZP_06001950.1| alanyl-transfer RNA synthetase [Brucella sp. F5/99]
 gi|265988722|ref|ZP_06101279.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M292/94/1]
 gi|265991136|ref|ZP_06103693.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994972|ref|ZP_06107529.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998187|ref|ZP_06110744.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M490/95/1]
 gi|294852359|ref|ZP_06793032.1| alaS [Brucella sp. NVSL 07-0026]
 gi|297248374|ref|ZP_06932092.1| alaS; alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|17982886|gb|AAL52113.1| metal-dependent hydrolase [Brucella melitensis bv. 1 str. 16M]
 gi|23347876|gb|AAN29974.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62196107|gb|AAX74407.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616004|emb|CAJ11030.1| Alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus
           2308]
 gi|161335815|gb|ABX62120.1| Alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674044|gb|ABY38155.1| Alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189019789|gb|ACD72511.1| Alanyl-transfer RNA synthetase [Brucella abortus S19]
 gi|225617533|gb|EEH14578.1| Alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225640922|gb|ACO00836.1| Alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|237790315|gb|EEP64525.1| Alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|255999639|gb|ACU48038.1| hypothetical protein BMI_I1059 [Brucella microti CCM 4915]
 gi|260096685|gb|EEW80560.1| alanyl-transfer RNA synthetase [Brucella abortus NCTC 8038]
 gi|260154072|gb|EEW89164.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260155927|gb|EEW91007.1| alanyl-transfer RNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260668332|gb|EEX55272.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 4 str.
           292]
 gi|260672269|gb|EEX59090.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674899|gb|EEX61720.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 6 str.
           870]
 gi|260873336|gb|EEX80405.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 9 str.
           C68]
 gi|260915649|gb|EEX82510.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 3 str.
           Tulya]
 gi|260920807|gb|EEX87460.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti B1/94]
 gi|260923695|gb|EEX90263.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M13/05/1]
 gi|261294587|gb|EEX98083.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M644/93/1]
 gi|261296912|gb|EEY00409.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis B2/94]
 gi|261303245|gb|EEY06742.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M163/99/10]
 gi|261738225|gb|EEY26221.1| alanyl-transfer RNA synthetase [Brucella sp. F5/99]
 gi|261742111|gb|EEY30037.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 5 str. 513]
 gi|261744769|gb|EEY32695.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 3 str. 686]
 gi|262552655|gb|EEZ08645.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M490/95/1]
 gi|262766085|gb|EEZ11874.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001920|gb|EEZ14495.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094096|gb|EEZ18018.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660919|gb|EEZ31180.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M292/94/1]
 gi|294820948|gb|EFG37947.1| alaS [Brucella sp. NVSL 07-0026]
 gi|297175543|gb|EFH34890.1| alaS; alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|326409075|gb|ADZ66140.1| Alanyl-transfer RNA synthetase [Brucella melitensis M28]
 gi|326538781|gb|ADZ86996.1| Alanyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 247

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     + +      
Sbjct: 31  IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL ID+Q R +L   H+A HLL  A    I G+ V ++ S +      FD+    P  S
Sbjct: 91  LVLHIDWQRRYKLMRMHTACHLLSVACPFPITGAAVGEDESRVD-----FDL----PDQS 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEY 683
              +S+ + + +++  N PV    ++ E+ +A+    ++ +K         R+R+V++  
Sbjct: 142 YTKESVTEKLMELVQANAPVSIHWISDEEFLAN--PDIVKSKNVRPPVGLGRIRLVAIG- 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           E+G V S   CGGTHVS T E+  ++I
Sbjct: 199 ENGSVDSQP-CGGTHVSETQEVGEIHI 224


>gi|281412503|ref|YP_003346582.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga naphthophila
           RKU-10]
 gi|281373606|gb|ADA67168.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga naphthophila
           RKU-10]
          Length = 373

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 126/277 (45%), Gaps = 35/277 (12%)

Query: 502 VEEAVSGQ-KVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-- 557
           V+E V  + K+  +   +PFY +  GGQLGD G  IG    L++    K+ +G  +H+  
Sbjct: 8   VDEVVRDRDKIIAISRTSPFYPDGKGGQLGDRG-KIGPANVLKV----KEKDGYILHYLD 62

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCI 612
             +E G    ++ LV       RR ++  H+A H+L  A   +     +  H+ +  S I
Sbjct: 63  THLEPGEYEYKIDLV------RRRDIACQHTAQHILSAAFLKVADLETVSFHMGERVSTI 116

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
                     ++  +    L+  ED  N+++     V    + +E+A       L   + 
Sbjct: 117 D--------LNAPFVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKLPNVE- 167

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
             +VRVV +     G      CGG HV +TGEI L+ IV+   ++  + RI  + G RA 
Sbjct: 168 -GKVRVVKI-----GDFDVTACGGFHVENTGEIGLIKIVNAEKVKKVLTRIYFVAGDRAL 221

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                +D+ LKSL+  L  S   ++ R E + EE ++
Sbjct: 222 KDYREKDKLLKSLSRVLTTSTKELLKRAENLLEEVKE 258


>gi|269986161|gb|EEZ92474.1| Alanine--tRNA ligase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 614

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 170/452 (37%), Gaps = 112/452 (24%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPF-KNIFTGQEKPVYQA 60
           S+   I   F  FF+K GH+ +    ++      + F  + +  F   +  G  +P    
Sbjct: 61  SSYKDIWDGFSSFFKKKGHKEIKRYPVVARWRDDIYFVEAAIDDFAPYVIKGIAEPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND++NVG + RH T F M    +F       YF + AI+   D + 
Sbjct: 121 LVVPQICLR----FNDINNVGLSGRHLTSFIMAEEAAFNTTKKKTYFDKEAIKYITDWI- 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                      ++GL   K   +T  ++ W  A  G  G C E 
Sbjct: 176 ---------------------------LTGLKIKKE-ELTFIEDAWVGA--GYAGSCLEY 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE-QQNKQERFILPKMSIDTGMGLERMA 234
           F        GGL           E+ N V+M++   +NK E   +P  +ID G GLER +
Sbjct: 206 F-------AGGL-----------ELGNQVYMRYVINENKLEE--IPTKTIDMGAGLERWS 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI------------------------- 269
            V       Y+   F  +++  ++  G+ Y+   I                         
Sbjct: 246 WVTNNTPTIYEA-TFPKVVEYIKKKVGVSYDDKKIKLAYEYIGKIDFEKTGIEEAIKAVA 304

Query: 270 ----VNHR-------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                N                I DH R+    I DG LP+N G GY LR I+RRA+ + 
Sbjct: 305 RDTKTNENEIKKMLSDMQAVYSIADHSRTLLVAIHDGALPSNVGGGYNLRNILRRALNFI 364

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           R   + +  +  ++     E GS + EL   K   +  +  E ER+    +R    +  +
Sbjct: 365 RSKNW-DLDINDVIEEHKKEFGSWFEEL--KKTDTKGVIDKEIERYNDFRERNYKFISSL 421

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           L     DE        +LY++ G+ +D ++ +
Sbjct: 422 LDKKEIDE----KQMIELYESRGITIDDIKTV 449


>gi|240102207|ref|YP_002958515.1| Alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           gammatolerans EJ3]
 gi|239909760|gb|ACS32651.1| Alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           gammatolerans EJ3]
          Length = 405

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 20/250 (8%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G +V ++ D+T FY E GGQ  D G   G+G R+ +  V  K +    H   +E      
Sbjct: 26  GDRVRLLLDRTIFYPEGGGQPSDRGFIEGNGFRVLVDRVYGKDK--IWHEGKLEGRFPEK 83

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + LT+D++ R +    H+  H+L   +  +LG+  +  G  I P+  + ++ +   +
Sbjct: 84  GDEVRLTLDWEWRYENMRAHTGQHILSAVIKGLLGADTT--GFQIFPEHGKIEIDYPGEL 141

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +  IE   N+II  ++ V   +       ++      L  K    +R+V +     
Sbjct: 142 SWELVNEIERKTNEIIWGDVEVEVEVYEELPGELSERLRKPLSEKVKPPIRIVKI----- 196

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G      CGGTHV ST E+ +L +++       + RIE  TG RA          L++L 
Sbjct: 197 GTVDVTPCGGTHVRSTREVGVLKVLNFYRKSRKLWRIEFATGNRA----------LRALN 246

Query: 747 SFLKVSQGNV 756
             LK   G++
Sbjct: 247 EILKDYWGSL 256


>gi|241662530|ref|YP_002980890.1| threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12D]
 gi|240864557|gb|ACS62218.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12D]
          Length = 239

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 27/204 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTE 568
           +  D T FYA +GGQ GDTG   + DG  + I D     +   V H   +     +L   
Sbjct: 28  IELDATVFYARSGGQAGDTGTLVLADGTTMAIADTVYSPDRQTVLHVPADNAGLTLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++  TID+  R +L   H+  HLL   +       V   G  I+PD  R D     P +
Sbjct: 88  TAVTATIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDAGRIDF--DLPES 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDRVRVVSV 681
           + +  ++   +N++I +N PV   ++  E+  A        GAA   GT     +R++ +
Sbjct: 140 TLDRDTLTAQLNELIGRNTPVRIDLITPEELAAQPELVRTIGAAPPAGTS---AIRIIHI 196

Query: 682 EYEDGGVHSSALCGGTHVSSTGEI 705
           +    G+     CGGTHV +TGEI
Sbjct: 197 D----GIDRQP-CGGTHVRATGEI 215


>gi|300214774|gb|ADJ79190.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 214

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 12/215 (5%)

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            CGGTHV +T EI L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK+ 
Sbjct: 3   FCGGTHVDNTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIV 62

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVD--- 805
           Q   V R  E  +E  KL L   K+ L+              + ++N  + I  +V+   
Sbjct: 63  QIKEVPRKIEQLQEQVKL-LEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSG 121

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVL 863
             +L+ + D  ++K  S +++L   + + K +++  ++ D +   + A DL + ++ KV 
Sbjct: 122 MSQLRQLADQWKEKQLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVG 181

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             GGGGGRP +AQ+GG       +A+     +L K
Sbjct: 182 --GGGGGRPDLAQAGGKKPEGIQEALKAAEDWLSK 214


>gi|15894193|ref|NP_347542.1| alanyl-tRNA synthetase-like protein [Clostridium acetobutylicum
           ATCC 824]
 gi|15023805|gb|AAK78882.1|AE007606_2 Alanyl-tRNA synthetase related protein [Clostridium acetobutylicum
           ATCC 824]
 gi|325508321|gb|ADZ19957.1| Alanyl-tRNA synthetase related protein [Clostridium acetobutylicum
           EA 2018]
          Length = 387

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 167/397 (42%), Gaps = 44/397 (11%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G+IV+   +  K E+V D+T FY E GGQ     C +G    + +  V +K + I+  H
Sbjct: 16  EGKIVDVLENDGKYEIVLDETSFYPEGGGQ----PCDLGTINNIPVEYVYEKGDTIY--H 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCI 612
            + ER    T       +D+  R+     H+  HLL  A   +      G H+ ++   I
Sbjct: 70  VMKERPEGNTAKC---KVDFLRRQDNIQQHTGEHLLSAAFFKLYNGVNYGFHMGEDYVTI 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             D         + +T+  +K IE   N  I  N+   T  M++ +  A         K 
Sbjct: 127 DID--------MEEVTNDMIKKIEAEANAYIYANVETKTYFMSKPE--AEKLPLRKAIKA 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
             ++R+V +    G V  SA C GTHV  TGE+ ++ ++     + G+ R+    G+RA 
Sbjct: 177 EGKIRIVQL----GDVDYSACC-GTHVVRTGEVGIIKVLRTEKYK-GMTRVYFKCGRRAF 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                +   +  L   L + + N++ +V+   EE   L+      + + N   L   KI 
Sbjct: 231 DEYSKEHNIITKLQKNLSIDEDNILNKVQTTMEEISNLKK--KLLEYKKNEAKLEVEKIK 288

Query: 793 DVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           + N    I    +  +   L+ + D ++ + ++ II+  G+         I+  ++ +D 
Sbjct: 289 EKNNNGVIFEHYEDGDFSFLEEIYDGIKDE-KAVIILTSGVDNR------ILFAQNGIDD 341

Query: 850 FNAVDLARLSAKVLGGGGGGG--RPHMAQSGGPNGNK 884
                + + + K   G GGG   R   A S   + NK
Sbjct: 342 IECGKIFKENIKEYNGRGGGNAKRAQAAFSNKDDLNK 378


>gi|311896687|dbj|BAJ29095.1| hypothetical protein KSE_32860 [Kitasatospora setae KM-6054]
          Length = 412

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 12/135 (8%)

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  +E  +N+++ + L V   +M  + A   GA A+ G K+ D VRVV++     G  S 
Sbjct: 80  LADVEQKINEVLVRELDVTAEVMTMDQAREQGAIAMFGEKHGDSVRVVTI-----GDFSK 134

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            L GGTHV +T ++ L+ ++ ESSI +G+RR+EA+ G  A   L  +   +  L   +K 
Sbjct: 135 ELGGGTHVGNTAQLGLVKLLGESSIGSGVRRVEALVGADAYRFLAREHTVVAQLTELVK- 193

Query: 752 SQGNVVGRVEEIWEE 766
                 GR EE+ E+
Sbjct: 194 ------GRPEELPEK 202


>gi|148270155|ref|YP_001244615.1| threonyl/alanyl tRNA synthetase, SAD [Thermotoga petrophila RKU-1]
 gi|147735699|gb|ABQ47039.1| Threonyl/alanyl tRNA synthetase, SAD [Thermotoga petrophila RKU-1]
          Length = 373

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 125/284 (44%), Gaps = 49/284 (17%)

Query: 502 VEEAVSGQ-KVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-- 557
           V+E V  + K+  +   +PFY +  GGQLGD G  IG    L++    K+ +G  +H+  
Sbjct: 8   VDEVVRDRDKIIAISRTSPFYPDGKGGQLGDRG-KIGPANVLKV----KEKDGYILHYLD 62

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA---------LSTILGSHVSQ- 607
             +E G    ++ LV       RR ++  H+A H+L  A         +S ++G  VS  
Sbjct: 63  THLEPGEYEYKIDLV------RRRDIACQHTAQHILSAAFLKVADLETVSFLMGERVSTI 116

Query: 608 --NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
             N   +  D L               +  ED  N+++     V    + +E+A      
Sbjct: 117 DLNAPFVLEDVL---------------EEAEDLANEVVRSCERVEILEIEKEEAEKMNLR 161

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            L   +   +VRVV +     G      CGG HV +TGEI L+ IV    ++  + RI  
Sbjct: 162 KLPNVE--GKVRVVKI-----GDFDVTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYF 214

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + G RA      +D+ LKSL+  L  S   ++ R E + EE ++
Sbjct: 215 VAGDRALKDYREKDKLLKSLSRVLTTSTKELLKRAENLLEEVKE 258


>gi|206901179|ref|YP_002251462.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Dictyoglomus thermophilum H-6-12]
 gi|206740282|gb|ACI19340.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Dictyoglomus thermophilum H-6-12]
          Length = 382

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 104/239 (43%), Gaps = 33/239 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLV 572
            D+T FY E GGQ  D G  IGDG ++ + D   + +GI  H      ER     E+  +
Sbjct: 33  LDETIFYPEGGGQPSDKGEIIGDGWKI-LVDYVFEEDGIIWHKGKKSGERFPKVGEVVDI 91

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVS--QNGSCITPDGLRFDVTHSKPITSA 630
             ID   RR+    H+A HL    LS IL    S    G  I  D  + ++ +      +
Sbjct: 92  F-IDKDLRREYMEQHTAQHL----LSAILEKEYSLETTGFQIFEDHTKIEIPYKGLNPES 146

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            +K +E+ VND I +N+PV                       +++ R+V +     G+  
Sbjct: 147 FIKEVEEKVNDFIGKNIPVSIYWK------------------DEKTRIVEIP----GLDV 184

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           +  CGG HV + GE+ +L IV          R+E + G+R    L  ++++ K +   L
Sbjct: 185 NP-CGGLHVKNLGELRVLKIVDFYRKNNIYWRVEFVAGRRVIKRLEEREKEYKKIKELL 242


>gi|160943556|ref|ZP_02090789.1| hypothetical protein FAEPRAM212_01049 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445235|gb|EDP22238.1| hypothetical protein FAEPRAM212_01049 [Faecalibacterium prausnitzii
           M21/2]
          Length = 396

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 18/265 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +  D T FY E GGQ  D G   + DG  L++ DV ++A G+  H             ++
Sbjct: 35  IALDGTVFYPEGGGQPADRGTLTLPDGTVLRVLDVHEQA-GVIWHTVDALPAAAAPGAAV 93

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      H+  H+L   L  + G+     G  +  + +R D   S PI+   
Sbjct: 94  AGCIDWDWRFDKMQQHTGEHILSGILHQMFGAE--NVGFHVGTEVVRMDT--SVPISPEG 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK--YNDRVRVVSVEYEDGGVH 689
           L+  E   N I+ Q++PV+     RE+     AA +  +K     +VR+V++   D    
Sbjct: 150 LRQAELAANRIVWQDVPVLISYPTREEL----AALVYRSKKEIEGQVRIVTIPGAD---- 201

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               C GTH  +TG++  + I++  + + G+ R+  + G RA +       +   + + L
Sbjct: 202 -VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCGARALAAAQAMRARQAEIGALL 259

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIH 774
                     V  +++EY  L+  H
Sbjct: 260 SAKADQTAVAVHRVYDEYTALKFTH 284


>gi|282164144|ref|YP_003356529.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
 gi|282156458|dbj|BAI61546.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
          Length = 402

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 119/262 (45%), Gaps = 22/262 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V VV  +T FY   GGQ  D G    DGI   + DV ++ +G  VH  ++ +      +S
Sbjct: 37  VRVVLSETAFYPGGGGQPSDRGTI--DGI--PVDDVIEQ-DGHVVH--VLGKAPANKTVS 89

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  ID+  R  L   HS  HLL   L  +     S     +  D L  DV  + P   A
Sbjct: 90  CI--IDFDRRFDLMQQHSGQHLLSAVLFKLYQCKTSSLHMGM--DELSIDV--AMPDMPA 143

Query: 631 E-LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           + L ++E+ VN  I ++LPVV  ++  E  +AS             VR+V +   D    
Sbjct: 144 QMLMTVEEEVNAYIYKDLPVVISVVTPE--VASEMTLRKTPPKEGEVRIVEITSID---- 197

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             + C GTHV  TGEI ++ IV ++  R    R+    G+RA      + + +  L    
Sbjct: 198 -RSPCCGTHVRRTGEIGIIKIV-KTEKRGAETRVYFKCGKRALKDYQFKQDIVTGLVHLY 255

Query: 750 KVSQGNVVGRVEEIWEEYRKLQ 771
           ++S+G+V+ + E +  + R  Q
Sbjct: 256 RMSEGDVLAKTEALAAQLRNTQ 277


>gi|257458286|ref|ZP_05623435.1| threonyl and alanyl tRNA synthetase domain protein [Treponema
           vincentii ATCC 35580]
 gi|257444313|gb|EEV19407.1| threonyl and alanyl tRNA synthetase domain protein [Treponema
           vincentii ATCC 35580]
          Length = 400

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 29/268 (10%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTE 568
           E+    T FY E GGQ GD G    +G +   + ++D Q + E I VH A  +   L   
Sbjct: 32  EIELSDTAFYPEGGGQPGDKGVLFAEGRQERAIHVSDTQFEGERI-VHIADAK---LAAG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTH 623
             +   +D+ NR      HS  H++   LS       +G H+ +  S IT D        
Sbjct: 88  TKVHGVLDWVNRCDNMQGHSGEHIITGILSKTYGYENIGFHMGE--SFITID-------F 138

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           + P+   ++   E   N+I+ +NLP+     + E+       + +  + +  VR++++  
Sbjct: 139 NGPLDDGQVLGAERRANEIVRENLPIQESFPSAEERKTMQYRSKI--ELSGTVRIITIP- 195

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G+ S A CG THV++TGEI L+ I++ ++ + G+ R+E + G++A      + E+++
Sbjct: 196 ---GLDSCACCG-THVTATGEIGLIKIINFTNRKKGV-RLEVLCGRKAVLAYEQEMEQVR 250

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +++  L      V   VE++  E  KLQ
Sbjct: 251 AISRCLSAKPTEVQEAVEKLNAEKGKLQ 278


>gi|108805363|ref|YP_645300.1| Ala-tRNA(Pro) hydrolase [Rubrobacter xylanophilus DSM 9941]
 gi|108766606|gb|ABG05488.1| Ala-tRNA(Pro) hydrolase [Rubrobacter xylanophilus DSM 9941]
          Length = 236

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 20/222 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           EVV D+T FY   GGQ  D G A+G G +R  + DV ++A G  VH  +++R I  T   
Sbjct: 26  EVVLDRTAFYPGGGGQPADRG-ALGIGPVRAAVVDV-RRAGGEIVH--VLDRPIPDTVRR 81

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L   +D++ R      H+A H+L   +    G+ V+  G  +  D  R D +     TS 
Sbjct: 82  LRGELDWERRYAHMRYHTALHVLSGVIWRRFGAKVT--GGQMRADRARMDFSFPGEWTSE 139

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYE 684
            +  IE   N  +A+  PV    + RE+A+ +    L+ T+ N      + VRVV +E  
Sbjct: 140 VVGEIERLTNAALAEERPVRVYELPREEALEN--PDLIRTQVNLVPERVELVRVVEIE-- 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G+ + A  GGTHV++T E+  + I S  S     +R+E +
Sbjct: 196 --GIDTQA-DGGTHVANTREVGRMEITSHKSKGRRNKRVEFV 234


>gi|312879726|ref|ZP_07739526.1| Alanyl-tRNA synthetase, class IIc [Aminomonas paucivorans DSM
           12260]
 gi|310783017|gb|EFQ23415.1| Alanyl-tRNA synthetase, class IIc [Aminomonas paucivorans DSM
           12260]
          Length = 392

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 25/214 (11%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EA  G +V++V  + PF+   GGQ GD+G     G+R +I D + + EG  V    V  G
Sbjct: 10  EAGKGNRVKLVLGENPFHPAGGGQPGDSGWVEAPGLRCRILDCRME-EGAPVLLGEVLEG 68

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST------ILGSHVSQNGSCITPDGL 617
                  +   +D +    L+  HS  H L  AL        +   +V    S IT   L
Sbjct: 69  TPVPGAEVEARVDEERHHLLARMHSGEHALSRALEKNVPGLRVFKVNVDTKESLIT---L 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-----IASGAAALLGTK- 671
           R++      +T   L + E   N +I  +LPV TR+ +RE+A     + +    L G K 
Sbjct: 126 RWEGE----LTWEVLFAAEAEANGVIRADLPVTTRVFSREEARVDPDLKANWDRLEGGKE 181

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             + +RVVS+     G +    C G+HV  TG+I
Sbjct: 182 APESLRVVSL-----GDYDKVACCGSHVERTGQI 210


>gi|291535695|emb|CBL08807.1| Alanyl-tRNA synthetase [Roseburia intestinalis M50/1]
          Length = 385

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 32/274 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T F+ E GGQ  D G    DGI  ++TDVQ K +   + H++ E   L    ++ 
Sbjct: 35  VILDRTLFFPEEGGQSPDKGTI--DGI--EVTDVQIKKD--VITHSLKEP--LAVGETVH 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTHSKPI 627
             ID+ +R      HS  H+    + +  G      H+S N   +  +G+         +
Sbjct: 87  GIIDWTHRFNNMQQHSGEHIFSGIVHSRFGYDNVGFHLSDNIVTMDFNGV---------L 137

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T+ E++ +E  VN++I +NLPV     ++E+       + +  +   +VR+V++     G
Sbjct: 138 TADEVREVETAVNEVIVKNLPVEITYPSKEELKTLDYRSKI--EIEGQVRIVTIP----G 191

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           V   A C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++ 
Sbjct: 192 VDVCACC-APHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISG 249

Query: 748 FLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKL 779
            L  +Q  +   VE++ +  +  K +L  AK+KL
Sbjct: 250 TLSANQELLPELVEKLKQSNQDLKYKLAQAKQKL 283


>gi|89101059|ref|ZP_01173899.1| hypothetical protein B14911_07628 [Bacillus sp. NRRL B-14911]
 gi|89084232|gb|EAR63393.1| hypothetical protein B14911_07628 [Bacillus sp. NRRL B-14911]
          Length = 398

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 168/394 (42%), Gaps = 50/394 (12%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           I ++  S  K   V D+T FY   GGQ  DTG   G    + +TDV+++ EG  + H + 
Sbjct: 23  IRQDQNSDGKWYAVLDRTAFYPTGGGQPFDTGTIHG----ISVTDVEEE-EG-EIRHYLE 76

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           ER  L     +   +++Q R      HS  H+L  A   + G         +  + L  D
Sbjct: 77  ER--LPESGEVDGRVNWQRRFDHMQQHSGQHILSAAFDELFGYRTV--SFHLGKETLTID 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  ++ ++  E    E   N+II  NLP+ T+ ++  +   +G      TK  + +R+V 
Sbjct: 133 I-ETENLSEEEAARAERKSNEIITDNLPIETKWVSESE--LAGYPLRKETKVKENIRLVI 189

Query: 681 V-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           + E++  G      CGGTH  +TGE+  + I+  S  +    R+E + G R    L  ++
Sbjct: 190 IPEFDYNG------CGGTHPKATGEVQAIKILGWSRQKKQT-RVEFVCGGRVLKQLHTKN 242

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----------C 788
             +      +   +G +   +         ++L+  +++++  +E+L             
Sbjct: 243 VIVNRTGQLISSPEGEIPEAI---------IKLLDTQKQMEKELEELKNQLLEQEGKEYA 293

Query: 789 HKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             I D +  +  +  + + KEL+ +  ++  +    I++    +  +  +V    T+   
Sbjct: 294 RSILDGSAIIRKVFRDRNVKELQKLAKSIAIQNDQAIVLFAAENGRQLQAVCASGTK--- 350

Query: 848 DRFNAVDLARLSAKVLGG--GGGGGRPHMAQSGG 879
                 D+ ++   +L    G GGG  H AQ GG
Sbjct: 351 ---TEADMKKIIQSILPAIHGRGGGNKHFAQGGG 381


>gi|15824732|gb|AAL09461.1|AF332359_1 alanyl-tRNA synthase [Fibrobacter succinogenes subsp.
          succinogenes S85]
 gi|15822558|gb|AAK13021.1| alanyl-tRNA synthase [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 57

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 36/57 (63%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
          FTN+GM  FK IF G    V       QKC+R  GKHNDLD VGR N HHTFFEM G
Sbjct: 1  FTNAGMNQFKAIFLGDNPKVGSRACNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMKG 57


>gi|148559488|ref|YP_001258988.1| hypothetical protein BOV_1019 [Brucella ovis ATCC 25840]
 gi|148370745|gb|ABQ60724.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 247

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 20/206 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     + +      
Sbjct: 31  IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           LVL ID+Q R +L   H+A HLL  A    +       G+ +  D  R D   + P  S 
Sbjct: 91  LVLHIDWQRRYKLMRMHTACHLLSVACPFPI------TGAAVGEDESRVDF--NLPDQSY 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYE 684
             +S+ + + +++  N PV    ++ E+ +A+    ++ +K         R+R+V++  E
Sbjct: 143 TKESVTEKLMELVQANAPVSIHWISDEEFLAN--PDIVKSKNVRPPVGLGRIRLVAIG-E 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYI 710
           +G V S   CGGTHVS T E+  ++I
Sbjct: 200 NGSVDSQP-CGGTHVSETQEVGEIHI 224


>gi|149180556|ref|ZP_01859060.1| hypothetical protein BSG1_16405 [Bacillus sp. SG-1]
 gi|148851709|gb|EDL65855.1| hypothetical protein BSG1_16405 [Bacillus sp. SG-1]
          Length = 404

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 155/379 (40%), Gaps = 47/379 (12%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            ++T FY   GGQ  D G  + + +  ++ +V    EGI  H+       L+    +   
Sbjct: 42  LEETAFYPTGGGQPFDKG-TLNNSMVTEVEEV----EGIIRHYI---DSPLKGTYEISGA 93

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           I++  R      H+  H+L  + S  LG         +  D    D+  S  +T  E   
Sbjct: 94  INWTRRFDHMQQHAGQHILSASFSKSLGYETV--SFHLGRDTCTIDINTS-ALTEEESSK 150

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
            E   N +I QN P+ T+ +N+E+            + + R+ V+  E++  G      C
Sbjct: 151 AEALANQVILQNQPIHTKWINKEEVDQYPLRKKPAVEGDIRL-VIIPEFDYNG------C 203

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTH  STGE+ ++ I++    +    R+  + GQR    L  ++  LK L   L     
Sbjct: 204 GGTHPRSTGEVGMIKILNWEKQKKNT-RVTFVCGQRVADQLHEKNSILKELTGVLNAPPS 262

Query: 755 NVVGRVEEIWEEYRKLQ-LIHAKRK--LQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
            ++  V  + E   K + L+   R+  L    EDL             I S VD   +K 
Sbjct: 263 EMISAVRTLIENGNKNEKLLEEARETILVYEAEDL-------------IKSSVDRGGVKV 309

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV---------DLARL--SA 860
           V   LQ +  + +  +     +    V+++V+E+  D+   V         D+  L   A
Sbjct: 310 VKKVLQHRSMADMQKMARTILQTHEVVVLLVSEN-GDKLQYVFGSCSSCQKDMKELIGVA 368

Query: 861 KVLGGGGGGGRPHMAQSGG 879
             L  G GGG P MAQ GG
Sbjct: 369 LALTDGKGGGNPSMAQGGG 387


>gi|253741613|gb|EES98479.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia intestinalis ATCC 50581]
          Length = 398

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 19/263 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V V   Q+ F+ ++GGQLGDTG +IG G+ +  T      EG    H +        E+S
Sbjct: 25  VYVRLSQSYFFPQSGGQLGDTG-SIG-GLPVITTSC---GEGHQPLHLMATAPPEDVELS 79

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   RRQ SI+H+      H  S++     +   S  T       +  S  ++  
Sbjct: 80  CI--VDATYRRQNSISHTG----QHVFSSVAERRFNAATSSYTMGAELSTLELSIKLSMD 133

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGV 688
           EL  IE+  NDII Q +PV + ++  E+ +              N  +R+V +   D   
Sbjct: 134 ELLEIENQANDIIRQCIPVKSTLVYSEEELGRYPEISRSKLKSLNFPLRIVDIANVD--- 190

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             + LC GTH S+TGE  L+ + +  S R G+ +++   G RA S +  +   L ++ + 
Sbjct: 191 --TCLCCGTHASNTGECGLVKVFACESSRGGV-KVQFAVGDRALSLINKRLMTLSTVCAS 247

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQ 771
           L     +V+  VE +  E + L+
Sbjct: 248 LTTGHDSVIKSVEALQAESKALR 270


>gi|167950027|ref|ZP_02537101.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 67

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG PG+ EE G+RYIEIWNLVFMQ+ +  +     LPK S+DTGMGLER+A V+  ++
Sbjct: 5   VAGGPPGTPEEDGDRYIEIWNLVFMQYNRDAEGNMTPLPKPSVDTGMGLERLAAVMPGRS 64


>gi|116620597|ref|YP_822753.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223759|gb|ABJ82468.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 386

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 165/407 (40%), Gaps = 48/407 (11%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           Q  IV+ +  GQ V    D++ FY  +GGQ  D G   G  + +++ D   +     + H
Sbjct: 16  QARIVDRSPDGQTV--YLDRSAFYPTSGGQPFDLGSIAGIAV-VEVVDEDDR-----IAH 67

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-----SHVSQNGSCI 612
            +     L T   +   ID+  R      HS  HL+      + G      H+    + I
Sbjct: 68  RLA--APLTTGEEVTARIDWARRFDHMQQHSGQHLISAVFEELFGLRTVSFHLGAESATI 125

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +G         P+    L   E   N +I +N P+  R  + ++A     A    ++ 
Sbjct: 126 DLEG--------GPVDPGTLPRAELRANQLIYENRPLDVRFEDAKEAQGLRKA----SER 173

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              +R+VS+E    G+  SA CGGTHV +TGEI ++ +     IR    R+E + G RA 
Sbjct: 174 EGMLRIVSIE----GLDRSA-CGGTHVRATGEIGVILLRKVEKIRQAA-RVEFVCGGRAV 227

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-----EDLS 787
                  E L  ++     +   V G V    E  +  +   A+RK++L +     +DL 
Sbjct: 228 KRARADFEALTKVSQVFSAALDEVPGMVAAQVEAAKAGE--KARRKVELELAAYQGKDLY 285

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                  + M  +   ++   L+  + A+ +   +  + +   + +   SVL+  + D  
Sbjct: 286 QATAPGPDGMRRVTQRLERGNLED-LRAVAQNFTAQPMAVFLATLQDPPSVLLAASAD-- 342

Query: 848 DRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              + VD  ++  +A     G GGG   +AQ   P+     + +  V
Sbjct: 343 ---SGVDAGKVLKAALTAASGRGGGNARIAQGSVPDAGALQKVVQAV 386


>gi|152974311|ref|YP_001373828.1| threonyl/alanyl tRNA synthetase SAD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023063|gb|ABS20833.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cytotoxicus NVH
           391-98]
          Length = 238

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 28/241 (11%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           ++QG  + + +  +K+  + D+T FY   GGQ  D G    + I   +  V++  +   +
Sbjct: 12  IKQGFSIIKNIENEKI--ILDKTIFYPTGGGQPCDIGYLKQNKIIFPVNKVER-VDNEII 68

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGS 610
           H       +    + LVL  D+  R +    HS  H+    L     +  LG+ + +N +
Sbjct: 69  HFIDNSEKLQYGPVELVL--DWNRRYKFMRYHSLLHVFAGYLYNEYDALTLGNQIFENRA 126

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR-----EDAIASGAA 665
                  R D+  +  ++  E ++IE  +N+II  N  + +RI+NR      D       
Sbjct: 127 -------RIDIQFNAQLSDTEFQNIEKRINEIIQDNHQIKSRIINRCEGTNLDGKIKTVL 179

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +L+    N+ +R++ +E  D        C GTHVS T EI    I+S  S   G RR E 
Sbjct: 180 SLIPNNINN-IRLIEIENLD-----EQPCNGTHVSETKEIGSFQIISNKSKGKGKRRFEL 233

Query: 726 I 726
           I
Sbjct: 234 I 234


>gi|326389883|ref|ZP_08211447.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994151|gb|EGD52579.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 400

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 123/276 (44%), Gaps = 30/276 (10%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           IV++     K E+V D+T FY E GGQ  DTG    DGI+  +  + ++ + ++      
Sbjct: 19  IVDKRKINNKWELVLDKTYFYPEGGGQPSDTGLI--DGIK--VYKIYEENDTVYHLADKC 74

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH-----VSQNGSCITPD 615
            +GI      +   +D++ R      H+  HLL   L    G+H     +    S IT  
Sbjct: 75  PKGI-----KVHCQVDWERRFDHMQQHTGQHLLSAVLEKKYGAHTQSFSIGDKSSHITIT 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
              F+   +  +           VN  + +N+PV T   + E  +          + ++ 
Sbjct: 130 KDTFNEEEAFEVEKE--------VNSFVYKNIPVKTYFADEE--MLKKLPLRKQPQVSEN 179

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R+V +E    G+  S  CGGTHV +TGEI ++ I        GI R+E + G RA    
Sbjct: 180 IRIVEIE----GIDYSP-CGGTHVMTTGEIGIVKIKKWEKTNKGI-RLEFVAGFRALYDY 233

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             ++  + +L   L   + N++  V ++ EE ++++
Sbjct: 234 HIKNNYVNALCHLLSEQEENILEHVLKLLEENKEVK 269


>gi|300681550|emb|CBH32647.1| alanyl-tRNA synthetase, putative, expressed [Triticum aestivum]
          Length = 256

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 18/226 (7%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           G +  VV D T F+ + GGQ  DTG    A G G R  + DV+ K +G+  H+   E   
Sbjct: 33  GGRRAVVLDATVFHPQGGGQPADTGAIVSAAGTGARFLVEDVRVK-DGVVFHYGRFEDAA 91

Query: 565 LRTEM----SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              E+    S+ L ID + R+  S  HSA HLL   + T LG H+        PDG   +
Sbjct: 92  AGEELSQGQSVSLEIDAERRKLNSRLHSAGHLLDSCM-TNLGLHLEPGKGYHFPDGPSVE 150

Query: 621 VTHSKPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-R 677
                P    + K I  E   N++I++   V+  +   E+A      AL      D   R
Sbjct: 151 YKGVVPADQLQDKKIQLEKEANELISKGSKVLVSVFPYEEAAKLCGGALPSYIPQDSTPR 210

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +V       G +    CGGTHV+   +I  L  V+   ++ G+ ++
Sbjct: 211 IVKF-----GNYPGCPCGGTHVADIADIGNLK-VTNIRVKKGVTKV 250


>gi|307266901|ref|ZP_07548420.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918058|gb|EFN48313.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 406

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 48/285 (16%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITD--------VQKKAE 551
           I+++     K E+V D+T FY E GGQ  DTG    DGI++ +I +          K  E
Sbjct: 19  IIDKRKINNKWELVLDKTYFYPEGGGQPSDTGLI--DGIKVYKIYEENDTVYHLADKCPE 76

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH-----VS 606
           GI VH                  +D++ R      H+  HLL   L    G+H     + 
Sbjct: 77  GIKVH----------------CQVDWERRFDHMQQHTGQHLLSAVLEKKYGAHTQSFSIG 120

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
              S IT     F+   +  +           VN  + +N+PV T   + E  +      
Sbjct: 121 DKSSHITITKDTFNEEEAFEVEKE--------VNSFVYKNIPVKTYFADEE--MLKKLPL 170

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
               + ++ +R+V +E    G+  S  CGGTHV +TGEI ++ I        GI R+E +
Sbjct: 171 RKQPQVSENIRIVEIE----GIDYSP-CGGTHVKTTGEIGIVKIKKWEKTNKGI-RLEFV 224

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            G RA      ++  + +L   L   + N++  V ++ EE ++++
Sbjct: 225 AGFRALYDYHIKNNYVNALCHLLSEQEENILEHVLKLLEENKEVK 269


>gi|329922834|ref|ZP_08278350.1| threonine/alanine tRNA ligase second additional domain protein
           [Paenibacillus sp. HGF5]
 gi|328941607|gb|EGG37892.1| threonine/alanine tRNA ligase second additional domain protein
           [Paenibacillus sp. HGF5]
          Length = 394

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 30/264 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V ++T FY   GGQ     C +G   ++ + DV ++ +G  +H   +ER   R E++  
Sbjct: 31  LVLEETAFYPHGGGQ----PCDLGWIDKIPVLDVVQE-DGEILHK--IERLPEREEVTCR 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           L  D+  R     +HS  HLL         +  L  H+ Q+ + I       D+  S  +
Sbjct: 84  L--DWDRRFDHMQHHSGQHLLSAMCLQVCEAETLSFHLGQDYATI-------DIARSD-L 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
              +L  +E  VND I  N  V   +++RE A A     +   K  D +R+V +E    G
Sbjct: 134 PQHQLMMLELEVNDQIYLNRQVTNYVVSREQAAA--LPLVKQPKVTDDIRIVEIE----G 187

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +  +A CGGTHVS+TGEI ++ ++  +  + G  R+    G RA        E L SL++
Sbjct: 188 IEYNA-CGGTHVSATGEIGMIKLLR-AEKQKGQMRLYFKCGYRALKEFNAGMEILGSLSA 245

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQ 771
               ++  ++ R+ +  +E ++LQ
Sbjct: 246 RFNTAKEEILDRIAKWDQEQKQLQ 269


>gi|292655029|ref|YP_003534926.1| alanyl-tRNA synthetase-like protein [Haloferax volcanii DS2]
 gi|291371865|gb|ADE04092.1| alanyl-tRNA synthetase homolog [Haloferax volcanii DS2]
          Length = 244

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 20/243 (8%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQK 548
           A   + E   E V G    VV D+T FY E GGQ  DTG         DG    +TDVQK
Sbjct: 10  ATTHEFEATVETVRGTD-RVVLDRTYFYPEGGGQPHDTGTLSVDGEGCDGETWDVTDVQK 68

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           +     + H +V         ++   +D   RR  S  H+A HLL   L     +  +  
Sbjct: 69  RDR---IEH-VVAGDAPDPGATVTGRVDPARRRAHSRYHTAQHLLSAVLLDEFDAETT-- 122

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----G 663
           G+ +  D    D  + +     +L++IE  +ND++A +LPV    ++RE+A A+      
Sbjct: 123 GNQLYADHAHLDCAYDR-FDGDDLRTIETRLNDLVASDLPVRWYSLDREEAEATLDPDRT 181

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              LL     + VR+V +   D     +A C GTHV STG+I  + I   ++  +   R+
Sbjct: 182 RLHLLPESIRE-VRIVEIGDADDPFDRTA-CAGTHVESTGDIGTVSIAGRTTQGSAHERV 239

Query: 724 EAI 726
             +
Sbjct: 240 NFV 242


>gi|295091706|emb|CBK77813.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Clostridium cf. saccharolyticum
           K10]
          Length = 387

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 123/262 (46%), Gaps = 31/262 (11%)

Query: 502 VEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V   VSG+K  EV  D+T FY E GGQ  DTG  +G     ++ DV +K +G  +H+   
Sbjct: 18  VTACVSGKKGFEVELDRTCFYPEGGGQPADTG-VLGTA---RVLDVHEK-DGTVIHYTDR 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPD 615
           E   L     +   ID++ R      HS  H++   + ++     +G H+ +  + I  +
Sbjct: 73  E---LSVGEEVTGRIDWEARFSNMQQHSGEHIVSGLIHSVYGYDNVGFHMGREETTIDLN 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G         P++  EL  IE+  N  +  N+P+     + E+       +    + + +
Sbjct: 130 G---------PMSWEELMEIEEKANRAVWANIPLKITYPSEEELEKLDYRS--KKELSGQ 178

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR+V V     GV + A C GTHV+ TGEI ++  +S  + + G+ RI  + GQ+A    
Sbjct: 179 VRIVEVP----GVDTCACC-GTHVAYTGEIGVIKFLSLMNYKGGV-RISMLCGQKALKAC 232

Query: 736 MGQDEKLKSLASFLKVSQGNVV 757
             + E++ +++  L      +V
Sbjct: 233 DRKTEQVSAVSVLLSAKPEEIV 254


>gi|297583294|ref|YP_003699074.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus selenitireducens
           MLS10]
 gi|297141751|gb|ADH98508.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus selenitireducens
           MLS10]
          Length = 407

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 169/404 (41%), Gaps = 50/404 (12%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LR 566
           G  V +VFDQT FY E GGQ  D G   G    L +TDVQ + +G   H  +VERG+ + 
Sbjct: 27  GGTVYLVFDQTWFYPEGGGQPADKGSISG----LPVTDVQLE-DGEIRH--MVERGVEVN 79

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDV 621
              ++   +D+  R      H A HLL   L     +  +  H+      I       +V
Sbjct: 80  VGDTVHCKLDWNRRLDYMQQHHAQHLLSAVLDDQFDAPTVSVHLGSEECAI-------EV 132

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRV 678
           T    +T  E+    D VN  I +N  + T  + RE+A         A+ G      VR+
Sbjct: 133 TWDD-LTEREVLEAVDQVNTWIRENHLINTTNVTREEADRYPLRKTPAVSGD-----VRL 186

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V VE    G+  +  CGGTH   TGE+ L+++      R G+R I  + G RA + L  Q
Sbjct: 187 VIVE----GIDYNP-CGGTHPLRTGEVQLVHLTGMERARGGLR-ITYLAGGRAVARLR-Q 239

Query: 739 DEKLKSLAS-FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-- 795
            +++   AS  L      +   + +  + +++L       K QL  +  +      VN  
Sbjct: 240 FQRITDEASRLLNSPPEGITDTLHKQIDAHQRLDKEMRSLKEQLLEQLFADWLKGAVNTK 299

Query: 796 --FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA-SVLIVVTEDLLDRFNA 852
              +  I  +   KEL+ +     + +    ++   +SK+    S L  V      R   
Sbjct: 300 EAMVPFIKEDFGMKELQKLSAKAVQALPDRPVLFATVSKDDNGDSHLEFVL--AAGRDCG 357

Query: 853 VDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           VDL R+   V     G GGG P   Q GG    KAD ++    S
Sbjct: 358 VDLKRVEKDVFALIQGKGGGSPKKLQGGG----KADLSLEAFKS 397


>gi|261408306|ref|YP_003244547.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. Y412MC10]
 gi|261284769|gb|ACX66740.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. Y412MC10]
          Length = 394

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 30/264 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V ++T FY   GGQ     C +G   ++ + DV ++ +G  +H   +ER   R E++  
Sbjct: 31  LVLEETAFYPHGGGQ----PCDLGWIDKIPVLDVVQE-DGEILHK--IERLPEREEVTCR 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           L  D+  R     +HS  HLL         +  L  H+ Q+ + I       D+  S  +
Sbjct: 84  L--DWDRRFDHMQHHSGQHLLSAMCLQVCEAETLSFHLGQDYATI-------DIARSD-L 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
              +L  +E  VND I  N  V   +++RE A A     +   K  D +R+V +E    G
Sbjct: 134 PQHQLMMLELEVNDQIYLNRQVTNYVVSREQAAA--LPLVKQPKVTDDIRIVEIE----G 187

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +  +A CGGTHVS+TGEI ++ ++  +  + G  R+    G RA        E L SL++
Sbjct: 188 IEYNA-CGGTHVSATGEIGMIKLLR-AEKQKGHMRLYFKCGYRALKEFNAGMEILGSLSA 245

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQ 771
               ++  ++ R+ +  +E ++LQ
Sbjct: 246 RFNTAKEEILDRIAKWDQEQKQLQ 269


>gi|300711202|ref|YP_003737016.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299124885|gb|ADJ15224.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 408

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV D+T FYAE GGQ  D G   G  +R    DVQ + +G  VH      G+  T  ++
Sbjct: 25  EVVLDRTYFYAEGGGQPADRGEIDGVAVR----DVQTR-DGTVVHSLADGSGV-ETGRTV 78

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID   R      H+A+H+L+ A   +L   +   G  I     R D   S  I    
Sbjct: 79  ACEIDPAFRTYCMRTHTASHVLYGAGRRLL-DDLGYGGFDIDERKARIDFETSTDIDDDV 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-----LGTKYNDR-VRVVSVEYED 685
           L  +E   N  + +  PV    +   DA A  A A       G    DR VR+VS+  + 
Sbjct: 138 LIELEVLANRTVWEGRPVTWETVPVADARAREAVAFNTRTEEGVFEEDRGVRIVSIGADR 197

Query: 686 GGVHSS-----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
               ++     A CGGTHVS+T EI  + ++  S+   G+ R+E   G  A  H
Sbjct: 198 TPTSTAESWDDAACGGTHVSNTREIGPISVLGRSNPGEGLTRVELAVGPAAIEH 251


>gi|291540969|emb|CBL14080.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Roseburia intestinalis XB6B4]
          Length = 385

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 32/274 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T F+ E GGQ  D G    DGI  ++TDVQ K +   + H++ E   L    ++ 
Sbjct: 35  VILDRTLFFPEEGGQSPDKGTI--DGI--EVTDVQIKKD--VITHSLKEP--LAVGETVH 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTHSKPI 627
             ID+ +R      HS  H+    + +  G      H+S N   +  +G+         +
Sbjct: 87  GIIDWTHRFNNMQQHSGEHIFSGIVHSRFGYDNVGFHLSDNIVTMDFNGV---------L 137

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T+ E++ +E   N++I +NLPV     ++E+       + +  +   +VR+V++     G
Sbjct: 138 TADEVREVETAANEVIVKNLPVKITYPSKEELKTLDYRSKI--EIEGQVRIVTIP----G 191

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           V   A C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++ 
Sbjct: 192 VDVCACCA-PHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISG 249

Query: 748 FLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKL 779
            L  +Q  +   VE++ +  +  K +L  AK+KL
Sbjct: 250 TLSANQELLPELVEKLKQSNQDLKYKLAQAKQKL 283


>gi|260459528|ref|ZP_05807783.1| Threonyl/alanyl tRNA synthetase SAD [Mesorhizobium opportunistum
           WSM2075]
 gi|259035082|gb|EEW36338.1| Threonyl/alanyl tRNA synthetase SAD [Mesorhizobium opportunistum
           WSM2075]
          Length = 247

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           V+ D+T FYA +GGQ GD+G     DG R++I   +  + +   VH     +  L     
Sbjct: 31  VILDRTIFYATSGGQPGDSGALERADGSRIEIAATITGETKDEIVHVQAPAQAALVVGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           + L ID++ R  L   H+A HLL       I G+ VS++ S +      FD+    P  S
Sbjct: 91  VKLAIDWERRHLLMRMHAACHLLTVVCPFPITGASVSEDDSRVD-----FDI----PDAS 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY------NDRVRVVSVEY 683
              + +   + D++  + P+ TR+++ E+  A+    L+ +K         R+R+V +  
Sbjct: 142 FTREEVTAGLMDLVRADHPIFTRLISDEELAAN--PGLVKSKNVRPPVGTGRIRLVCI-G 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           E+  V S   CGGTHV STGE+  ++I
Sbjct: 199 ENASVDSQP-CGGTHVKSTGEVGEIHI 224


>gi|240146561|ref|ZP_04745162.1| putative alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257201292|gb|EEU99576.1| putative alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 385

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 32/274 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T F+ E GGQ  D G    DGI  ++TDVQ K +   + H++ E   L    ++ 
Sbjct: 35  VILDRTLFFPEEGGQSPDKGTI--DGI--EVTDVQIKKD--VITHSLKEP--LAVGETVH 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTHSKPI 627
             ID+ +R      HS  H+    + +  G      H+S N   +  +G+         +
Sbjct: 87  GIIDWTHRFNNMQQHSGEHIFSGIVHSRFGYDNVGFHLSDNIVTMDFNGV---------L 137

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T+ E++ +E   N++I +NLPV     ++E+       + +  +   +VR+V++     G
Sbjct: 138 TADEVREVETAANEVIVKNLPVEITYPSKEELKTLDYRSKI--EIEGQVRIVTIP----G 191

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           V   A C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++ 
Sbjct: 192 VDVCACCA-PHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISG 249

Query: 748 FLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKL 779
            L  +Q  +   VE++ +  +  K +L  AK+KL
Sbjct: 250 TLSANQELLPELVEKLKQSNQDLKYKLAQAKQKL 283


>gi|167757739|ref|ZP_02429866.1| hypothetical protein CLOSCI_00070 [Clostridium scindens ATCC 35704]
 gi|167664621|gb|EDS08751.1| hypothetical protein CLOSCI_00070 [Clostridium scindens ATCC 35704]
          Length = 384

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 161/386 (41%), Gaps = 42/386 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E+++      K EVV D+T F+ E GGQ  DTG  + D   +++ DV+++ + IF H 
Sbjct: 16  EAEVLDCRPVKDKYEVVLDRTAFFPEGGGQYADTG-YLDD---VEVLDVKEREDVIF-HT 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 I R    +   ID++ R      H+  H++   +    G      G  +  D  
Sbjct: 71  TAAPLEIGRM---VAGRIDWEQRFDRMQQHTGEHMVSGLIHRRFG--YDNVGFHLGSDYC 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D   + PI    LK IE   N  + QNL +     ++++       + +  + + +VR
Sbjct: 126 TMDF--NGPIPREALKEIEQEANRAVFQNLDIQISYPSKKELKELEYRSKI--EIDGQVR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V+V   D        C   HV  TGEI L+ +V  +  + G  RI  + G+RA      
Sbjct: 182 IVTVPGYD-----VCACCAPHVKRTGEIGLIKLVGMAKYKGG-ERISMLCGRRALLDYEI 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +DE  K +++ L   +  V   VE + EE   L     K KL    + L  ++ A +   
Sbjct: 236 KDENAKRISALLCAKEYEVADAVERMKEEQASL-----KGKLASLQQKLLSYQAAQIPVE 290

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------- 850
             + +  D         +L       ++ L+ + +      +   T+DL  R+       
Sbjct: 291 GKVTAVFDP--------SLSGNAPRDLMNLL-LGRGAVVCAVFTGTDDLGYRYVIGSGRE 341

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +   L R+  +    G GGG+P MAQ
Sbjct: 342 DVRPLCRMLNEAF-EGRGGGKPEMAQ 366


>gi|307692628|ref|ZP_07634865.1| Alanyl-tRNA synthetase, class IIc-like protein [Ruminococcaceae
           bacterium D16]
          Length = 382

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 27/274 (9%)

Query: 502 VEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           VE    G+K  +++ DQT FY E GGQ  DTG   G    + + +V ++ EG  VH    
Sbjct: 18  VESCTQGKKGWDILLDQTAFYPEGGGQPYDTGTLGG----VPVLEVHQR-EGWVVHTCAA 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     +   ID+  R  L  +HS  H++     ++ G      G  +  D +  D
Sbjct: 73  P---LEAGSQVEGQIDWPRRFDLMQHHSGEHIVSGIAHSLYG--CDNVGFHMGSDVITID 127

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIAS--GAAALLGTKYNDRVR 677
           +  +  +T  ++  +E   N  I ++ P+ VT    +E  +       AL G     +VR
Sbjct: 128 L--NVELTPEQVAQLEARANQYIWEDHPIAVTYPTPQELEVLEYRSKKALTG-----QVR 180

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +VS    D     +  C GTHVSS+G++ L+ ++S    R G+ RIE + G+RA  +L  
Sbjct: 181 IVSFPGAD-----TCACCGTHVSSSGQVGLVKLLSCQKFRDGV-RIELVCGKRALDYLSQ 234

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             E+   +++ L        G V  + +E   L+
Sbjct: 235 VWEQNHQISNLLSAKTMQTSGAVRRLLDENAALK 268


>gi|299066945|emb|CBJ38140.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 245

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 29/212 (13%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVER- 562
           AV  + +E+  D+T FYA  GGQ GDTG   + DG  + I D   +A+   + H   +  
Sbjct: 22  AVHPEGIEL--DRTVFYARGGGQAGDTGTLVLPDGQTVAIADTVYRADRQAILHVPADPA 79

Query: 563 --GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G+L   + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 80  DLGLLAPGLPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYN 673
                P ++ E +++   +N +IA++ PV   ++  E   A        GAA   G    
Sbjct: 134 F--DLPESTLERETLTAQLNALIARDTPVRIALITPEALAAQPQLVRTIGAAPPAGVS-- 189

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             +R+V ++    G+     CGGTHV +TGEI
Sbjct: 190 -AIRIVEID----GIDRQP-CGGTHVHATGEI 215


>gi|332158482|ref|YP_004423761.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331033945|gb|AEC51757.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 404

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 14/240 (5%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  ++E    G+ V++  D+T FY E GGQ GD G   GD  ++ + +  ++   I+ H 
Sbjct: 16  KARVLEVKKDGELVKIRLDRTIFYPEGGGQPGDRGVIEGDEFKVIVENTIEENGEIW-HV 74

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +E  I +   S+ L +D++ R      H+  H+L   L  +    +   G  I  +  
Sbjct: 75  GKLEGDIPKEGSSVKLKLDWEWRYGNMQIHTGQHILSAVLKKLY--DLDTTGFTIFGEYA 132

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT--KYNDR 675
           + +V         E   IE   N ++  N+PV  ++   E+     A  L  +  K   +
Sbjct: 133 KIEVNGELSWDMIERAEIE--ANKVVWSNVPV--KVEEYEELPPEVARELRKSVVKSKGK 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R+V V    G V ++  CGGTHVS TGE+ ++ ++        + RIE   G RA + L
Sbjct: 189 IRIVRV----GDVDATP-CGGTHVSRTGEVGVIKVLRFYKKSRDLWRIEFTCGYRAITKL 243


>gi|297852292|ref|XP_002894027.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339869|gb|EFH70286.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 400

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 61/209 (29%)

Query: 113 LLTKEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
            +T+ + L   R+Y T ++         D EA  +W K   L + +++     DNFW M 
Sbjct: 8   FMTQVYGLPTDRIYSTYFEGDVKAGLQPDNEAGDIWLKF--LPSGRVMPFDCKDNFWEMG 65

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI +D+           +++    +EIWNLVF+QF    K           
Sbjct: 66  DTGPCGPCTEIHYDRDAA-----SLVNKDDPTCLEIWNLVFIQFNNSGK----------- 109

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
              +G +             D+D             G  Y        RV+ D +R+   
Sbjct: 110 ---VGAD-------------DVDR-----------VGTAY--------RVVADPIRTLLI 134

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR 313
            I +G  P +EG  + LR I+R A+ Y +
Sbjct: 135 AIVNGSRPGSEGLQHDLRSILRGAVRYGK 163


>gi|283798149|ref|ZP_06347302.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Clostridium sp. M62/1]
 gi|291074129|gb|EFE11493.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Clostridium sp. M62/1]
          Length = 387

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 122/262 (46%), Gaps = 31/262 (11%)

Query: 502 VEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V   VSG+K  EV  D+T FY E GGQ  DTG  +G     ++ DV +K +G  +H+   
Sbjct: 18  VTACVSGKKGFEVELDRTCFYPEGGGQPADTG-VLGTA---RVLDVHEK-DGTVIHYTDR 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPD 615
           E   L     +   ID++ R      HS  H++   + ++     +G H+ +    I  +
Sbjct: 73  E---LSVGEEVTGRIDWEARFSNMQQHSGEHIVSGLIHSVYGYDNVGFHMGREEMTIDLN 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G         P++  EL  IE+  N  I  N+P+     + E+       +    + + +
Sbjct: 130 G---------PMSWEELMEIEEKANRAIWANIPLKITYPSEEELEKLDYRS--KKELSGQ 178

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR+V V     GV + A C GTHV+ TGEI ++  +S  + + G+ RI  + GQ+A    
Sbjct: 179 VRIVEVP----GVDTCACC-GTHVAYTGEIGVIKFLSLMNYKGGV-RISMLCGQKALKAC 232

Query: 736 MGQDEKLKSLASFLKVSQGNVV 757
             + E++ +++  L      +V
Sbjct: 233 DRKTEQVSAVSVLLSAKPEEIV 254


>gi|253573261|ref|ZP_04850604.1| threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846789|gb|EES74794.1| threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 389

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 166/378 (43%), Gaps = 46/378 (12%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V VV +++ FY   GGQ  DTG   G    + + DV   +EG  V H  VER     E  
Sbjct: 30  VYVVLEESAFYPHGGGQPNDTGRIGG----IPVLDV--ISEGDEVLHK-VER--FPEEAQ 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSK 625
           +   ID+  R      HS  HLL      +     L  H+ ++   I  D         +
Sbjct: 81  VRCEIDWNRRFDHMQQHSGQHLLSAVCRELYEAMTLSFHLGEDYCTIDVD---------R 131

Query: 626 P-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-Y 683
           P ++S +L++IE   N  I  N  +    + +E+A  S    +   K  DRVR+V +E  
Sbjct: 132 PELSSEQLEAIEREANRHIYLNHKISGYFVTQEEA--SRLPLVKPPKAVDRVRIVEMEDV 189

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E  G      CGGTHV++TG I ++ ++     +  + RI    G RA      Q   L 
Sbjct: 190 EYNG------CGGTHVAATGAIGMIKLLKTEKQKGNV-RIFFKCGYRALREFQEQQHILG 242

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---QLNVEDLSCHKIADVNFMSHI 800
           S+ + L+  + +++ R+++  +E ++LQ      K    ++ V +L   +   +  ++ I
Sbjct: 243 SITAKLRTGRDSILERLDKWEDEQKRLQREFDTLKEAMDEMTVRELLTKREGGI--IAQI 300

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            ++   K+L+S+   L     + +++    + E +  V++           A     LSA
Sbjct: 301 FADKSLKDLQSLAQKLTAHSDAAVLL----ATEAEQKVVLAHNGSRSLSCGAFFKEHLSA 356

Query: 861 KVLGGGGGGGRPHMAQSG 878
               GG GGG   +AQ+G
Sbjct: 357 Y---GGKGGGSDKLAQAG 371


>gi|291294611|ref|YP_003506009.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus ruber DSM 1279]
 gi|290469570|gb|ADD26989.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus ruber DSM 1279]
          Length = 390

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 155/388 (39%), Gaps = 53/388 (13%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + ++V     G K   V DQT FY  +GGQ  DTG   G  +   + D   KA G  +H 
Sbjct: 14  EAQVVRAWSEGGKHFAVLDQTLFYPTSGGQACDTGHLGGVAVLEVLEDA--KATGPVIHR 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV----SQNGSCIT 613
             +E  +L  +  +V  +D+  R +    H+A H+L  A     G +V      N  C  
Sbjct: 72  --LESPLLEGQ-RVVGQLDWARRYRHMQRHTAEHMLGQAFLRAAGWNVVAVNMSNPVCT- 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
              + FD     P   A ++  E   N  +  N  V T  +N  +A A G       K  
Sbjct: 128 ---MDFD----GPPDEAVIRQAEALANWAVYANTAVRTYFINDAEAPAHGLRR--APKVA 178

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             +RVV +E  D        CGG HV+ TGE   + I      + G  R+  + G  A  
Sbjct: 179 GLIRVVEIEGWD-----RVACGGLHVARTGEAGPIKITRFERYKGGT-RVYFMAGWEALE 232

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
               +   L  L  +   S   V   +  + EE+R+ +  +A  K +L            
Sbjct: 233 LFEQEHRLLARLGEWFSSSPLEVEKPIGNLREEWRRARAENAALKDELA----------- 281

Query: 794 VNFMSHIISEVDSKELK-----SVMDALQKKI--QSGIIMLVGISKEKKASVLIVV---- 842
              M  +++E  ++ +      SV+D + K++    G++ L+    E KA  +++     
Sbjct: 282 ERIMRDLLTEFPTQTMAAQVPHSVLDMVGKRLAEWPGVLALLVAQAEDKARYVLLKHPSR 341

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +EDL   +  V       K LG  GGG 
Sbjct: 342 SEDLQAIWEEV------LKPLGARGGGA 363


>gi|330816733|ref|YP_004360438.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia gladioli BSR3]
 gi|327369126|gb|AEA60482.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia gladioli BSR3]
          Length = 244

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 44/233 (18%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKK-----AEGIFVHHAIVERGILR 566
           +  ++T FY   GGQLGDTG   +GDG RL I D +K           +H    ++  + 
Sbjct: 28  LTLERTVFYPHGGGQLGDTGVITLGDGSRLAIADARKSQLPGATPDDVLHVPAPDQLAVL 87

Query: 567 TEMS----LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           ++++    + + ID+  R ++   H+A+HL+  AL   +      +G  ITPD  R D  
Sbjct: 88  SKLAVGDEVAIEIDWARRNRMMRLHTASHLMCGALPYPV------DGCSITPDYARLDFV 141

Query: 623 HSKPITSAEL-----KSIE-------DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            S+P+   E+     K +E       + ++D   Q  P + R M+ +     G+  L   
Sbjct: 142 TSEPLARDEIDATLAKWVEAARAVTIEQISDEALQANPDLVRTMSVKPPSGFGSVRL--- 198

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                VR+  ++ +         CGGTHV++T EI  +++       A  RR+
Sbjct: 199 -----VRIDGIDLQP--------CGGTHVANTAEIGPIHVTKMEKKTARTRRV 238


>gi|4928218|gb|AAD33469.1|AF130451_1 alanyl-tRNA synthetase [Terrimonas ferruginea]
          Length = 56

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 35/55 (63%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          FTN+GM  FK+ F G  KP    V   QKC+R  GKHNDL+ VG    HHTFFEM
Sbjct: 1  FTNAGMNQFKDYFLGNRKPASARVADTQKCLRVSGKHNDLEEVGVDTYHHTFFEM 55


>gi|312109703|ref|YP_003988019.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y4.1MC1]
 gi|311214804|gb|ADP73408.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 20/221 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +++ D+T FY   GGQ  DTG         ++  VQ++  G  VH+      I + +   
Sbjct: 26  KIILDETIFYPTGGGQPHDTGMIKQGNETFKVNKVQRE-NGQIVHYV---DNIEKLKQGP 81

Query: 572 V-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           V + ID+  R +    HS  H+L   L    G+     G+ I  D  R D    +P+T+ 
Sbjct: 82  VEILIDWDRRYKFMRYHSLLHVLAGYLYNKFGALAI--GNQIFEDRARIDFQFEEPLTNE 139

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDA------IASGAAALLGTKYNDRVRVVSVEYE 684
           +   IED +N +I ++  V  R ++RE+A      I +    L  +  N  VR+V++   
Sbjct: 140 QFNEIEDEINKLIQEDHQVSIRTVSREEAERIDGSIKTVINLLPPSIKN--VRLVAI--- 194

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            G +   A CGGTHV  T EI    I    S     +R+E 
Sbjct: 195 -GDIDEQA-CGGTHVKETKEIGPFQISKIKSKGQNKKRLEV 233


>gi|298526029|ref|ZP_07013438.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495823|gb|EFI31117.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 100

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 7  IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
          IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QK
Sbjct: 6  IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64

Query: 67 CVRAGGKHNDLDNVG 81
          C+R      D+D VG
Sbjct: 65 CIRT----PDIDEVG 75


>gi|222099897|ref|YP_002534465.1| Alanyl-tRNA synthetase-related protein [Thermotoga neapolitana DSM
           4359]
 gi|221572287|gb|ACM23099.1| Alanyl-tRNA synthetase-related protein [Thermotoga neapolitana DSM
           4359]
          Length = 370

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 39/279 (13%)

Query: 502 VEEAVSGQ-KVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +EE V  + +V  +  ++PFY +  GGQLGD G  IG    L++    K+  G  +H+  
Sbjct: 6   IEEVVKNENQVIAIARESPFYPDGKGGQLGDRG-KIGPARVLKV----KEKNGYILHY-- 58

Query: 560 VERGILRTEMS---LVLTIDYQNRRQLSINHSATHLLHHA------LSTILGSHVSQNGS 610
                L TE+        ID   R+ ++  H+A H+L  A      L T+   H+ +  S
Sbjct: 59  -----LDTELEPGEYDCEIDLSRRKDIACQHTAQHILSAAFLKTADLETV-SFHMGEEIS 112

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            I          ++  I    L+ +ED  N+++ +   V    ++ ++A       +   
Sbjct: 113 TID--------LNAPFILEDVLEEVEDLANEVVRKCERVEISEVDLKEAETLNLRKIPEV 164

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           K  +++RVV +     G      CGG HV +TGEI L+ IV    ++    R+  + G+R
Sbjct: 165 K--EKIRVVKI-----GDFDITACGGFHVENTGEIGLIKIVDTEKVKKMFTRVYFVAGER 217

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           A      +D  ++SL + L  S   +  RV+ + E  ++
Sbjct: 218 ALKDYRSKDRLIRSLTTVLTTSSQELEKRVKNLLESVKE 256


>gi|284048719|ref|YP_003399058.1| Threonyl/alanyl tRNA synthetase SAD [Acidaminococcus fermentans DSM
           20731]
 gi|283952940|gb|ADB47743.1| Threonyl/alanyl tRNA synthetase SAD [Acidaminococcus fermentans DSM
           20731]
          Length = 397

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 168/398 (42%), Gaps = 41/398 (10%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE-GIFVH---HAIVERGILRT 567
           EV+ D+T  + E GGQL D G        L +  V   +E G  V    HA VE G    
Sbjct: 30  EVILDRTVLFPEGGGQLSDKG-------WLDMVPVYYASEDGPEVRHWTHAPVEPG---- 78

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++ + +D+  R      H   H+L +A     G+  +  G  +  D +  D+   + I
Sbjct: 79  -KTVTVKLDWPVRLDRMQQHCGEHILSYAFWKTCGA--NNVGFHMNEDSVFIDL--DQEI 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR--VVSVEYED 685
              + K  E   N+ +  N PV    +   DA   G   L   K N+++R  V  V+ ++
Sbjct: 134 DEEKAKKAEWMANECLWANEPVSLHYV---DASELGKYPL--RKKNEKLRGTVRLVDIKN 188

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G +     C GTH   TG +  + I+     + G  RIE + G RA   +  ++  L+  
Sbjct: 189 GDI---CTCCGTHPPYTGMVGSIQIIRFVRHKGG-SRIEFLCGNRALKAMHERNRILEET 244

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK--LQLNVEDLSCHK--IADVNFMSHI 800
           ++FL V   +V+  VE++ +E   L+  +  K +  ++  + DL      +AD   +  +
Sbjct: 245 SNFLSVKAEDVLPAVEKLHQEILDLRGKVREKTQELIRFQLPDLLAQAPVLADGTRLLVL 304

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             E  + + KS M       + G++  V      +      ++E       A       A
Sbjct: 305 TLEGTAADGKSAMKL--ASAEPGVLAAVFTKDGDRIMYQFALSEGAEGDCKA---CCTKA 359

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             L GG GGGRP  AQ GG  G   +Q +  + + +KK
Sbjct: 360 NALFGGRGGGRPQSAQGGGTAGADWEQKVRELVAEIKK 397


>gi|282857461|ref|ZP_06266694.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282584746|gb|EFB90081.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 391

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 148/376 (39%), Gaps = 46/376 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV   QT FY E GGQL D+G  IGD     ++D ++K +G  VH+A     +   +   
Sbjct: 32  EVTLSQTAFYPEGGGQLADSG-VIGDA---AVSDTRRK-DGAIVHYADKPLPVGSVQHG- 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+Q R     +H   H   H +S ++      +         +  V  + PI   +
Sbjct: 86  --AIDWQKR----FDHMQAHSGEHIVSGLVHRRWGYDNVGFHMAADKVTVDFNGPIGEEQ 139

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  +E + N  I  NLPV     + E+  A    +    + +  VR+V    E  GV   
Sbjct: 140 LAELERDANAAIYANLPVRVAFPSPEELAALDYRSK--KELSGAVRLV----EFPGVDLC 193

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           A C GTHV  +GEI L+  ++ +  + G+ RIE + G+ A      ++E+ + +      
Sbjct: 194 ACC-GTHVERSGEIGLIKFIAMARYKGGV-RIEMLCGRLAMQDYARKNEQEREIGRIFSA 251

Query: 752 SQGNVVGRVEE---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
                V  V +     E         A+R  +L            ++F           E
Sbjct: 252 KPYETVEAVRQHVAAAEAAEARASELARRYFELRTAQFPAGDGLLIDFEEGF----KPAE 307

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA-----RLSAKVL 863
           L+   DA           LV   K K A+VL     +    +N V  A     R + K L
Sbjct: 308 LRKFCDA-----------LVSGGKAKTAAVLSPAESNGRKGWNYVICAREPVLREAVKTL 356

Query: 864 G---GGGGGGRPHMAQ 876
               GG GGG P + Q
Sbjct: 357 NKELGGRGGGDPTLVQ 372


>gi|51893904|ref|YP_076595.1| alanyl-tRNA synthetase, truncated [Symbiobacterium thermophilum IAM
           14863]
 gi|51857593|dbj|BAD41751.1| alanyl-tRNA synthetase, truncated [Symbiobacterium thermophilum IAM
           14863]
          Length = 400

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 167/409 (40%), Gaps = 45/409 (11%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G ++  +  G    VV +QT FY  +GGQ  D+G   G      + DV  + +G  VH 
Sbjct: 17  EGHVLSCSPVGDAWAVVLNQTCFYPASGGQPSDSGTLGGQ----PVLDVHAEPDGTIVH- 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCI 612
             V  G L    ++V  +D+  R      H+  HLL  A   +L +     H+    S +
Sbjct: 72  --VVGGPL--SGTVVGQVDWTRRLDHMEQHTGQHLLSAAFVHLLQADTVSWHLGAEASTV 127

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
                  D+     +++ +++ +E   N +I   LPV   + + E+A             
Sbjct: 128 -------DIAVEN-LSAEQVEEVELTCNRLIRAGLPVHAHLCSPEEA--HRFPLRKPPTV 177

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           +  VR++ +E  D      + CGGTH+ S GE+ L+ I +    +  +R +  + GQRA 
Sbjct: 178 SGPVRIIEIEGYD-----WSPCGGTHLRSIGELGLIKIKTWERYKRAVR-VTFLAGQRAL 231

Query: 733 SHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--S 787
              M  D   + LA  L +   ++     R +E     RK      +  L +  E L   
Sbjct: 232 HDYMALDRMTRDLARRLSIGAADLPRWADRTQEEVTSLRKRVRTQQEELLAVEAERLLAG 291

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +I     +        + EL+  + A +     G + + G ++     ++     DL 
Sbjct: 292 ARRIGPARVVRQTFGGRPADELR--LLAAKVAGTPGCVAVFG-TRGALPQLIFHRAADL- 347

Query: 848 DRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                +D+ ++ + VL    G GGG P  AQ GG    + ++A+    S
Sbjct: 348 ----RLDVGQILSAVLPIIDGKGGGSPVQAQGGGTRPERLEEALDAAVS 392


>gi|257051705|ref|YP_003129538.1| Threonyl/alanyl tRNA synthetase SAD [Halorhabdus utahensis DSM
           12940]
 gi|256690468|gb|ACV10805.1| Threonyl/alanyl tRNA synthetase SAD [Halorhabdus utahensis DSM
           12940]
          Length = 265

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 104/226 (46%), Gaps = 18/226 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE-RGI 564
           V   +  +V D T FY E GGQ  D G    DG    + DV+K      VHH I +  G 
Sbjct: 45  VEATEESIVLDGTYFYPEGGGQPADRGTIEWDGGAAAVVDVRKDHGE--VHHEIDDVEGD 102

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS-TILGS-HVSQNGSCITPDGLRFDVT 622
           L  E    +    +NRR+    H   H   H LS  +LG+   +  G+ I  D  R D  
Sbjct: 103 LPAEGETAIGQIDENRREA---HRRMHTAQHILSRVVLGAFDATTAGNQIHADCSRIDFE 159

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAAL-LGTKYNDRVRV 678
            +     A+L+ IE+  N++I ++L V      R   E+ +A G + L L   + + +RV
Sbjct: 160 PAD-FDDADLELIEERTNEVIERDLRVNKDERPRETVEETVAEGRSNLSLLPDHVEELRV 218

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V ++  D        CGGTHV  TGEI  + I +  S  A + RIE
Sbjct: 219 VEIDDFD-----MCPCGGTHVDRTGEIGPIEITNRLSKGAEVERIE 259


>gi|182418186|ref|ZP_02949486.1| dhha1 domain protein [Clostridium butyricum 5521]
 gi|237666298|ref|ZP_04526285.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378004|gb|EDT75544.1| dhha1 domain protein [Clostridium butyricum 5521]
 gi|237658388|gb|EEP55941.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 401

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 169/392 (43%), Gaps = 41/392 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K  V  D+T F+   GGQ  DTG  IGD    ++ DV +  E   V+H IVE+  ++   
Sbjct: 27  KFRVTLDKTAFFPGGGGQSCDTG-MIGDH---KVIDVYE--ENDIVYH-IVEKKPIKIH- 78

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTHS 624
           ++   ID + R      H   H+L      +  +     H+  + S +   G+       
Sbjct: 79  NVKCKIDSERRTDGMCQHLGQHVLSGCFFNLFNANTFAIHLGADISTVDIYGV------- 131

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683
             +T  ++++ E   N +I   L V + I  + +    +   AL  TK  + +R+V +  
Sbjct: 132 --LTEEQIRAAERLANKVIGDALKVESFIPTKSELKKLTLRRALPNTK--EDIRIVKI-- 185

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G       C G H  ST ++ L+ I      + G R IE ++G RA      +DE   
Sbjct: 186 --GDDFDINACCGLHPKSTLDLRLIKIKKFEKHKEGTR-IEFLSGNRAIEDSYKKDEFQN 242

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSH 799
           S+  +L  ++   V  ++ +    ++   I+  + L + + +    ++ D    V     
Sbjct: 243 SICKYLNCNENEAVNGIKNLNNNLKEANEIN--KSLNITLANYQVKELIDNAETVGEFKI 300

Query: 800 IISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLAR 857
           I S  D++ LK + +   K +++   + L+ +  E K +++   T+ + + + N V    
Sbjct: 301 IKSIFDNENLKYINNLTSKLVETPNTVTLMAVKSEDKVNLIFACTKGIKEIKVNEVLKDA 360

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +S   L  G GGG P MAQ  G N    D A+
Sbjct: 361 IS---LIDGKGGGSPFMAQGAGKNNANLDGAL 389


>gi|150020809|ref|YP_001306163.1| threonyl/alanyl tRNA synthetase, SAD [Thermosipho melanesiensis
           BI429]
 gi|149793330|gb|ABR30778.1| Threonyl/alanyl tRNA synthetase, SAD [Thermosipho melanesiensis
           BI429]
          Length = 363

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 120/266 (45%), Gaps = 30/266 (11%)

Query: 508 GQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           G +   +   +PFY +  GGQLGD G  IG+   L++ +   K     ++H I +R I  
Sbjct: 12  GDRYYAISSNSPFYVDYKGGQLGDRG-YIGNSRVLRVFEKDGK-----IYHEI-DREI-- 62

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E S  + ID ++R  +  +H+A H+L  AL  I         + I   G R    ++  
Sbjct: 63  EEGSYEIEIDEEHRNFVKAHHTAQHILSAALHEI---------AEINTVGFRMGFEYTTV 113

Query: 627 ------ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 +    LK  E+  ND++ + + V   +++RED         L  K   +VR++ 
Sbjct: 114 DLDVPFVNDMVLKEAEELSNDVVKRCINVEEVLVDREDVGRFKLRKPLSEKVEGKVRIIK 173

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G    + CGG HV +TGEI ++ ++ +  I+  + R+  +    A  +    + 
Sbjct: 174 I-----GEFDYSPCGGFHVKNTGEIGVIKVLKQEKIKGNLTRLYFVASSLALKYFWKYNN 228

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEE 766
            L++++  L  S   +  +V +  +E
Sbjct: 229 ILRNISKTLTSSISEIEEKVSKTLDE 254


>gi|110668771|ref|YP_658582.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
 gi|109626518|emb|CAJ52980.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 412

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 116/266 (43%), Gaps = 20/266 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  D T FYAE+GGQ  D G  + D   + +TDVQ  A+G+ V H +           + 
Sbjct: 26  VTLDHTYFYAESGGQPPDIGT-LSD---ISVTDVQS-ADGV-VKHTLASTPAFDIGDDIT 79

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID + R      H+A+H+++ A   IL  ++   G  I  + +R D T + PI    L
Sbjct: 80  GIIDDEFRNYCMRAHTASHIIYGAGRQIL-DNLGYGGFGINSEKIRVDFTTTTPIDDETL 138

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-------DRVRVVSVEYED 685
             +E   N  + ++  V    +   +A A    A   TK         D VR+V ++  D
Sbjct: 139 IKLEQLTNRTVWESRDVTWETVPTAEAAAREDVAF-NTKTEEGVMSDADSVRLVDIDGWD 197

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                 A CGGTHV +T  +  + ++  S+   G+ RIE   G         Q   L+  
Sbjct: 198 -----VAACGGTHVGNTSAVGPVTVLERSNPGEGMTRIEFAVGPTGIDRRATQHRALRET 252

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           A  L+ +  N+  R   + +E  +L+
Sbjct: 253 AIALETNIINLSDRATALRDERDELE 278


>gi|56807614|ref|ZP_00365516.1| COG0013: Alanyl-tRNA synthetase [Streptococcus pyogenes M49 591]
          Length = 88

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 6/86 (6%)

Query: 1  MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
          M  +SS  IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1  MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTN 84
            +T  QK +R     ND++NVG+T+
Sbjct: 61 PRITNAQKSIRT----NDIENVGKTS 82


>gi|296536252|ref|ZP_06898368.1| alanyl-tRNA synthetase AlaS [Roseomonas cervicalis ATCC 49957]
 gi|296263406|gb|EFH09915.1| alanyl-tRNA synthetase AlaS [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 17/199 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+TPFYA+AGGQ GDTG    +G  + + +  K   G  +H    E  +      + 
Sbjct: 27  VVLDRTPFYAQAGGQPGDTGVLAWEGGAMPVANAVKGEAGAVLHVPAPEAALPSVGARVT 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R +L   H++ HLL    S I G+ V+  G  I  +  R D   ++P T   L
Sbjct: 87  ARLDWARRHRLMRMHTSLHLL---CSLIPGAGVT--GGQIGVEKSRLDFDLAEPPTKEWL 141

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYNDRVRVVSVEYEDG 686
               + +  + A +  V  R ++  DA      +L+ T      +   +VR+V +  E+ 
Sbjct: 142 ---SERLTALAAADHAVTERWIS--DAELDANPSLVRTLSVQPPRGGGQVRLVRIGAEEA 196

Query: 687 GVHSSALCGGTHVSSTGEI 705
            V     CGGTHV  TGEI
Sbjct: 197 PVDLQP-CGGTHVRQTGEI 214


>gi|306843926|ref|ZP_07476521.1| alanyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275681|gb|EFM57405.1| alanyl-tRNA synthetase [Brucella sp. BO1]
          Length = 247

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     + +      
Sbjct: 31  IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL ID+Q R +L   H+A HLL       I G+ V ++ S +      FD+    P  S
Sbjct: 91  LVLHIDWQRRYKLMRMHTACHLLSVVCPFPITGAAVGEDESRVD-----FDL----PDQS 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEY 683
              +S+ + + +++  N PV    ++ E+ +A+    ++ +K         R+R+V++  
Sbjct: 142 YTKESVTEKLMELVQANAPVSIHWISDEEFLAN--PDIVKSKNVRPPVGLGRIRLVAIG- 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           E+G V S   CGGTHV  T E+  ++I
Sbjct: 199 ENGSVDSQP-CGGTHVCETQEVGEIHI 224


>gi|70926489|ref|XP_735776.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56509736|emb|CAH86830.1| hypothetical protein PC302180.00.0 [Plasmodium chabaudi chabaudi]
          Length = 258

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 70/120 (58%), Gaps = 8/120 (6%)

Query: 495 IVQQGEIVEEAVSGQKVE-------VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
           IV   +  +E+ SG+K+E       ++  +T FY E GGQ+ DTG    + ++ Q+ +VQ
Sbjct: 89  IVHTDDDAKESSSGEKIENKQKKYALILKETNFYYENGGQIYDTGYIQNESMKFQVLNVQ 148

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K  + I +H  ++  G ++   ++   +D++ R+ ++ NH+ATHLL+ AL  +L   V+Q
Sbjct: 149 KMNDYI-LHIGVLLNGHIKKNDAIETVVDFERRKLIACNHTATHLLNFALRKVLTDQVNQ 207


>gi|325262863|ref|ZP_08129599.1| alanyl-tRNA synthetase family protein [Clostridium sp. D5]
 gi|324031957|gb|EGB93236.1| alanyl-tRNA synthetase family protein [Clostridium sp. D5]
          Length = 389

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 166/388 (42%), Gaps = 47/388 (12%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G+  EVV D+T F+ E GGQ  DTG  + D    ++ DV +K +GI  H   V    +  
Sbjct: 26  GEYYEVVLDRTAFFPEGGGQYADTG-WLEDS---KVMDVWEK-DGIIYH---VTEAPVEE 77

Query: 568 EMSLVLTIDYQNRRQLSINHSATHL---LHHAL--STILGSHVSQNGSCITPDGLRFDVT 622
              +   ID+  R      H+  H+   L HA      +G H+      +  DG      
Sbjct: 78  NREITGKIDWDMRFMKMQQHTGEHIVSGLVHARFGYNNVGFHLGSGDCTMDFDG------ 131

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               IT  EL+ IE   N+   +NL V     ++E+ ++    + +  +    VR+V++ 
Sbjct: 132 ---EITKEELREIEWQANEAAVKNLEVQVSWPSKEELVSLEYRSKI--EIEGEVRIVTIP 186

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             D        C   HV  TGEI L+ + +    + G  R+  + G RA +    +++ +
Sbjct: 187 GYD-----VCACCAPHVKKTGEIGLIKLTNVQRYKGGA-RVTMLCGFRALADYDSKEQHV 240

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           KS+++ L   +  +      + EE  +L+ + A+++ +L +E  +     +  F      
Sbjct: 241 KSISALLSAKEEEISQAAGRMKEECGRLKAVLAEKQKRL-LEYRAAEISGEETFACLFEE 299

Query: 803 EVDSKELKSVMD-ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           E++    + +M+  L + I+   + L    K  +  V+  + ED+          R  AK
Sbjct: 300 ELEGDGPRILMNLVLARGIECCAVFLKTGDKSWR-YVIGSMGEDM----------RPVAK 348

Query: 862 VLG---GGGGGGRPHMAQSGGPNGNKAD 886
            L     G GGG+P M Q G   G + D
Sbjct: 349 GLNEEFCGRGGGKPEMVQ-GSLQGKEED 375


>gi|295401328|ref|ZP_06811299.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976543|gb|EFG52150.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 238

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 20/221 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +++ D+T FY   GGQ  DTG         ++  VQ++  G  VH+      I + +   
Sbjct: 26  KIILDETIFYPTGGGQPHDTGMIKQGNETFKVNKVQRE-NGQIVHYV---DNIEKLKQGP 81

Query: 572 V-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           V + ID+  R +    HS  H+L   L    G+     G+ I  D  R D    +P+T+ 
Sbjct: 82  VEILIDWDRRYKFMRYHSLLHVLAGYLYNKFGALAI--GNQIFEDRARIDFQFEEPLTNE 139

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDA------IASGAAALLGTKYNDRVRVVSVEYE 684
           +   IED +N +I ++  V  R ++RE+A      I +    L  +  N  VR+V++   
Sbjct: 140 QFNEIEDEINKLIQEDHQVSIRTVSREEAERIDGSIKTVINLLPPSIKN--VRLVAI--- 194

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            G +   A CGGTHV  T EI    I    S     +R+E 
Sbjct: 195 -GDIDEQA-CGGTHVKETKEIGPFQISKIKSKGQNKKRLEV 233


>gi|315648430|ref|ZP_07901529.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus vortex V453]
 gi|315276124|gb|EFU39470.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus vortex V453]
          Length = 393

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 167/383 (43%), Gaps = 43/383 (11%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           + +V ++T FY   GGQ     C +G   ++ + DV  + EG  +H   VE    + E+ 
Sbjct: 29  IYLVLEETAFYPHGGGQ----PCDLGWIDKIPVLDVVLE-EGAILHK--VEFFPEKEEVG 81

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDVTHSK 625
             L  D+  R     +HS  HLL         +  L  H+ Q+ + I       DV  S 
Sbjct: 82  CHL--DWDRRFDHMQHHSGQHLLSAMCLEAFQAETLSFHLGQDYATI-------DVARSG 132

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            ++ AEL  +E  +ND I  N  V    ++RE A       +   K  D +R+V +E   
Sbjct: 133 -LSQAELMMLELEINDQIYLNRKVSNYFVSREQAAV--LPLVKQPKVTDDIRIVEIE--- 186

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G+  +A CGGTHVS+TGEI ++ ++  +  + G  RI    G RA        E L SL
Sbjct: 187 -GIEYNA-CGGTHVSATGEIGMIKLLR-AEKQKGHVRIYFKCGYRALKEFNIGMEILGSL 243

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISE 803
           ++    ++  +  R+ +   E ++LQ   +  K + +V  L+   +AD     + H+ ++
Sbjct: 244 SARFNTAKEEIPDRIAKWDLEQKQLQAELSAVKAENDVY-LAEKLLADRQGRLIQHVFAD 302

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKV 862
              K LK + +   K  +   ++ + +SK     VL           F  + LA      
Sbjct: 303 ---KPLKDMQNLTAKLTEQADVIALFVSKTDHKVVLAQGERGPACGAFFKLHLADY---- 355

Query: 863 LGGGGGGGRPHMAQSGGPNGNKA 885
             GG GGG   MAQ+G      A
Sbjct: 356 --GGKGGGSDKMAQAGFATAEDA 376


>gi|319783367|ref|YP_004142843.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169255|gb|ADV12793.1| Alanyl-tRNA synthetase, class IIc-like protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 247

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D+T FYA +GGQ GDTGC    DG R+ I   +  + +   +H    E+ + +   +
Sbjct: 31  IILDRTIFYATSGGQPGDTGCLERADGSRIAIAATLTGETKDEIIHVPAPEQAVPQVGET 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           + L ID++ R  L   H+A HLL       I G+ VS++ S +      FD     P   
Sbjct: 91  VRLAIDWERRHLLMRMHAACHLLTVVCPFPITGAAVSEDDSRVD-----FDA----PDAG 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY------NDRVRVVSVEY 683
              + I   + +++  + P+  R+++ E+  A+    L+ +K         ++R+V +  
Sbjct: 142 FTKEDITAGLMELVRADHPIFVRLISDEELAAN--PGLVKSKNVRPPAGTGKIRLVCI-- 197

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            D     S  CGGTHV STGE+  ++I
Sbjct: 198 GDNASVDSQPCGGTHVKSTGEVGEIHI 224


>gi|167950023|ref|ZP_02537097.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 139

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 5/138 (3%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + + G+I L  I+ E+ I AG+RRIEA+TGQRA   +   +E++    + LK S+ ++  
Sbjct: 1   MKAVGDIGLCKIIVETGIAAGVRRIEAVTGQRAIEWMEADEERVLRTVALLKGSRDDLEE 60

Query: 759 RVEEIWEEYRKL--QLIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++ E  RKL  +L   K KL      DL  S   +A +  ++  +   DSK L+  M
Sbjct: 61  KVMQLLERNRKLEKELEQLKGKLASAAGSDLASSAEDVAGIKVLAATLEGADSKSLRETM 120

Query: 814 DALQKKIQSGIIMLVGIS 831
           D L+ K+ S +I+L  I+
Sbjct: 121 DQLKNKLGSAVILLAAIN 138


>gi|254240533|ref|ZP_04933855.1| hypothetical protein PA2G_01189 [Pseudomonas aeruginosa 2192]
 gi|126193911|gb|EAZ57974.1| hypothetical protein PA2G_01189 [Pseudomonas aeruginosa 2192]
          Length = 244

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 46/239 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEG-----IFVH-----HAIVE 561
           ++ DQT FY + GGQ GD+G   + DG RL+I D +K  E        +H      A V 
Sbjct: 29  LLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDAILHIPAEGQATVL 88

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R +   E+ L   ID+  R +    H+A H+L   L   +      NG  IT +  R D 
Sbjct: 89  RAMKPGEVVLA-QIDWVRRYRHMRLHTAAHMLCAVLPYPV------NGCSITDEHARLDF 141

Query: 622 THSKPITSAELKS-----IE-------DNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             S+P++   + S     +E       D ++D   +  P + R M+ +  + +G      
Sbjct: 142 VTSEPLSREAIDSALAAMVEAAHPVSIDTMSDDALRARPDLVRTMSVQPPMGAG------ 195

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +VR+VS++  D        CGGTHV++T E+ ++ +       A  RR+  + G
Sbjct: 196 -----QVRLVSIKDTD-----LQPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVLVLG 244


>gi|49082120|gb|AAT50460.1| PA2106 [synthetic construct]
          Length = 245

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 46/239 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEG-----IFVH-----HAIVE 561
           ++ DQT FY + GGQ GD+G   + DG RL+I D +K  E        +H      A V 
Sbjct: 29  LLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDAILHIPAEGQATVL 88

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R +   E+ L   ID+  R +    H+A H+L   L   +      NG  IT +  R D 
Sbjct: 89  RAMKPGEVVLA-QIDWVRRYRHMRLHTAAHMLCAVLPYPV------NGCSITDEHARLDF 141

Query: 622 THSKPITSAELKS-----IE-------DNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             S+P++   + S     +E       D ++D   +  P + R M+ +  + +G      
Sbjct: 142 VTSEPLSREAIDSALAAMVEAAHPVSIDTMSDDALRARPDLVRTMSVQPPMGAG------ 195

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +VR+VS++  D        CGGTHV++T E+ ++ +       A  RR+  + G
Sbjct: 196 -----QVRLVSIKDTD-----LQPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVLVLG 244


>gi|15597302|ref|NP_250796.1| hypothetical protein PA2106 [Pseudomonas aeruginosa PAO1]
 gi|9948120|gb|AAG05494.1|AE004638_4 hypothetical protein PA2106 [Pseudomonas aeruginosa PAO1]
          Length = 244

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 46/239 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEG-----IFVH-----HAIVE 561
           ++ DQT FY + GGQ GD+G   + DG RL+I D +K  E        +H      A V 
Sbjct: 29  LLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDAILHIPAEGQATVL 88

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R +   E+ L   ID+  R +    H+A H+L   L   +      NG  IT +  R D 
Sbjct: 89  RAMKPGEVVLA-QIDWVRRYRHMRLHTAAHMLCAVLPYPV------NGCSITDEHARLDF 141

Query: 622 THSKPITSAELKS-----IE-------DNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             S+P++   + S     +E       D ++D   +  P + R M+ +  + +G      
Sbjct: 142 VTSEPLSREAIDSALAAMVEAAHPVSIDTMSDDALRARPDLVRTMSVQPPMGAG------ 195

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +VR+VS++  D        CGGTHV++T E+ ++ +       A  RR+  + G
Sbjct: 196 -----QVRLVSIKDTD-----LQPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVLVLG 244


>gi|254719126|ref|ZP_05180937.1| Alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984121|ref|ZP_06096856.1| threonyl/alanyl tRNA synthetase SAD [Brucella sp. 83/13]
 gi|306838411|ref|ZP_07471256.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662713|gb|EEZ32974.1| threonyl/alanyl tRNA synthetase SAD [Brucella sp. 83/13]
 gi|306406551|gb|EFM62785.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 247

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 106/207 (51%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     + +      
Sbjct: 31  IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL ID+Q+R +L   H+A HLL       I G+ V ++ S +      FD+    P  S
Sbjct: 91  LVLHIDWQHRYKLMRMHTACHLLSVVCPFPITGAVVGEDESRVD-----FDL----PDQS 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEY 683
              +S+ + + +++  N PV    ++ E+ +A+    ++ +K         R+R+V++  
Sbjct: 142 YTKESVTEKLMELVRANAPVSIHWISDEEFLAN--PDIVKSKNVRPPVGLGRIRLVAIG- 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           E+G V S   CGGTHV  T E+  ++I
Sbjct: 199 ENGSVDSQP-CGGTHVCETQEVGEIHI 224


>gi|83647732|ref|YP_436167.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
 gi|83635775|gb|ABC31742.1| predicted metal-dependent Hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Hahella chejuensis KCTC 2396]
          Length = 235

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 19/229 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHA 558
           E + + V+ ++  V+ D+T FY   GGQ GDTG       R+ ++TD +K  +G  + H 
Sbjct: 14  ECIAKVVAIKENSVLLDRTIFYPLGGGQPGDTGEFENQSARVWKVTDTRKDPDGEGILHI 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L   M L L ID++ R      H   H   H L +++ + V+  G  I+ D  R
Sbjct: 74  LDRSEGLEEGMELALRIDWERR----YAHMRMHTCLHLLCSLIEAPVT--GGNISVDKGR 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYND 674
            D        S +   +E  +N ++A   PV  R +  E+  A        ++   K   
Sbjct: 128 LDFYLD---YSPDKDGLESRINALVAAGHPVSYRWITDEELDAQPELVRTLSVQPPKGAG 184

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +VR+VSV+    GV     CGGTHV +T EI  + I    +   G RR+
Sbjct: 185 KVRLVSVD----GVDLQP-CGGTHVKNTAEIGPVLIGKIENKGKGNRRV 228


>gi|120613091|ref|YP_972769.1| metal-dependent hydrolase [Acidovorax citrulli AAC00-1]
 gi|120591555|gb|ABM34995.1| Predicted alanyl-tRNA synthetase-like metal-dependent hydrolase
           [Acidovorax citrulli AAC00-1]
          Length = 255

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 24/224 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQ--KKAEG------IFVHHAIVERG 563
           +V D+T FY   GGQ GD G  +  DG  + ITD +  K AEG      + V     E  
Sbjct: 37  IVLDRTVFYPLGGGQAGDAGVLVRADGREVPITDTRKGKDAEGKPTAAIVHVPAPGAEPP 96

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  E++    ID++ R +L   H+ THLL H ++  +      NG  +TPD  R D   
Sbjct: 97  AVGEEVT--ARIDWERRHRLMRFHTTTHLLCHLVAQPV------NGCSVTPDAARLDFHM 148

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVV 679
             P+ +A L +    +  ++A+  PV    +   +  A      + ++   + + +VR V
Sbjct: 149 DGPLDAAALNA---GIARLVAEAHPVAIGAITDAELDAQPELVKSMSVQPPRGSGQVRTV 205

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V  +         CGGTHV++T EI  + +       A  RR+
Sbjct: 206 RVGTDGQTQIDLQPCGGTHVANTAEIGAVVVTKIEKKGAMARRV 249


>gi|222480904|ref|YP_002567141.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453806|gb|ACM58071.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
          Length = 432

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 36/243 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH------HAIVERGILR 566
           +V D+T FYAE+GGQ  D G    DGI L   DV ++ +G  VH        + E G   
Sbjct: 27  IVLDETYFYAESGGQPADRGTI--DGILL--ADVIER-DGRVVHILDQDAETLPEAG--- 78

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R   +  H+A+H+L+ A        +   G  I+   +R D+T ++P
Sbjct: 79  --ETVSAVVDDAFRTYCTRAHTASHVLYGAARRTC-DDLGYAGFDISATKVRVDLTTAEP 135

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVRVV 679
           +  A+L  +E   N  +  +LPV    +  ++A A    A   TK        ++ VRVV
Sbjct: 136 LDDADLVELERLANRAVWDSLPVSWEALPEDEARAVDGIAF-NTKTEEGAMSGSEAVRVV 194

Query: 680 SV-------EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           +V       + E GG ++     A CGGTHV +T EI  + ++  S+   G+ R+E   G
Sbjct: 195 TVGERGGERDGEHGGENAPTWDVAACGGTHVRNTSEIGPISVLDRSNPGEGVTRVEFAVG 254

Query: 729 QRA 731
             A
Sbjct: 255 PTA 257


>gi|187927944|ref|YP_001898431.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12J]
 gi|187724834|gb|ACD25999.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12J]
          Length = 239

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 23/209 (11%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           AV  + +E+  D T FYA +GGQ GDTG   + DG  ++I D     +   V H   +  
Sbjct: 22  AVHSEGIEL--DATVFYARSGGQAGDTGTLVLADGTTIRIADTVYSPDRQTVLHVPADNA 79

Query: 564 ---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              +L    ++  TID+  R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 80  GLTLLAPGTAVTATIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDAGRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRV 676
                P ++ +  ++   +N++I +N PV   ++  E+  A                  +
Sbjct: 134 F--DLPESTLDRDTLTTQLNELIGRNTPVRIDLITPEELAAQPELVRTIGAAPPAGASAI 191

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           R++ ++    G+     CGGTHV +TGEI
Sbjct: 192 RIIHID----GIDRQP-CGGTHVRATGEI 215


>gi|188589051|ref|YP_001921224.1| dhha1 domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499332|gb|ACD52468.1| dhha1 domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 399

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 181/410 (44%), Gaps = 38/410 (9%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI E    G +  +V ++T F+   GGQ  D    +G    +++ +V +K + I+    
Sbjct: 16  AEIDEIKEVGNEFHIVLNKTAFFPGGGGQRHD----LGKIDEIEVLNVYEKDDLIY---H 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +++R   R   ++  +ID+  RR   +NH   HL  H LS       + N   +      
Sbjct: 69  VLDRKPSRIH-NVKCSIDWL-RRLDGMNH---HLAQHILSASFFKLFNINTIAVHHGNEF 123

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVR 677
             +  +  +T  +++S E   ND+I ++L V       RE         L  T  N+++R
Sbjct: 124 STIDFNSILTEEQVRSCEKYANDVIGESLDVEFLTPTKRELKNMKLRRDLPDT--NEQIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V ++  D        C G H  ST ++ L+ I      + G  RIE ITG +A S  + 
Sbjct: 182 IVKIDDLDLNA-----CCGVHPKSTLDLRLIKIKKYEKHKKG-SRIEFITGSKAVSDSLE 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           +D    S+  +L  ++   +  +E +  E + +   +    ++L+  ++     +  +I 
Sbjct: 236 KDSFANSMCKYLNCNEKEALNGIENLKLELKNVLNENKNISIELSNYEIKEIIENSAQIN 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           D+N + ++ +    K + +++  + +K     I L+ +  + K +++   ++++ +    
Sbjct: 296 DINIIKYVYNNKTLKFVNTIISQITEK--DNKIALIALVNDDKINLIFSCSKNIKN---- 349

Query: 853 VDLARL--SAKVLGGGGGGGRPHMAQSGGPN----GNKADQAIAGVASFL 896
           V++  L   A VL  G GGG   MAQ  G N     N  D A   + S L
Sbjct: 350 VNMGELLKDAIVLIDGRGGGNQTMAQGAGKNLLNLDNTLDYAFNKLKSIL 399


>gi|161598611|ref|YP_001573826.1| tRNA synthetase-related protein [Bacillus thuringiensis serovar
           israelensis]
 gi|21685478|emb|CAD30140.1| tRNA synthetase-related protein [Bacillus thuringiensis serovar
           israelensis]
          Length = 235

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 42/209 (20%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH--HAIVERGI----- 564
           ++  +QT FY E GGQ+GD G   G+    ++ D QK    +F H    I++ G      
Sbjct: 26  KIFLNQTVFYPEGGGQIGDQGWIEGN----EVIDTQKTGGNLFYHSNFPIIKVGSEVAHI 81

Query: 565 -------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  LR  M +   I+++ R  L   H+A HL+++    + G    + G  I  D  
Sbjct: 82  LKEPVKGLREGMEVKAKINWERRHMLMRMHAAAHLVYYYTFQVFGEMYVK-GCHIAEDRA 140

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           RFD  +  K +    L  +E+  N I+  N+P+    +N E                   
Sbjct: 141 RFDFYSPDKRLDREGLDKVEEFANLIVTDNIPIKNIPLNEEPE----------------- 183

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              ++ +  G +H    CGGTHV  TG+I
Sbjct: 184 ---AINWICGDMHIP--CGGTHVRQTGDI 207


>gi|257469927|ref|ZP_05634019.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317064157|ref|ZP_07928642.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313689833|gb|EFS26668.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 374

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 35/261 (13%)

Query: 519 PFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           PFY +  GGQLGD G  IG+ I L++ D             +V++ +   E     +I+ 
Sbjct: 25  PFYIDGKGGQLGDRG-TIGESIVLEVKD----------GSILVDKEVALGEQEC--SINM 71

Query: 578 QNRRQLSINHSATHLLH------HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + R+ ++  H+A HL        + L+T +G  +++  + +  D        S  IT   
Sbjct: 72  ERRKDIASQHTAQHLFSALAYNDYQLNT-MGFRMAEEYTTVDLD--------SNTITEET 122

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +K +E+  N++I + + +    +N E+A+   G    +  K    VR V +   D G   
Sbjct: 123 IKELENKANEVIRRAIELKIYTLNHEEAMKIEGLRKAIKDKVTGDVRFVEIPDTDLGA-- 180

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C G HV +T +I L  I+S   I+    R   I G RA      + E  K L     
Sbjct: 181 ---CAGFHVENTKDIKLFKILSHEKIKGNYTRFFFIAGDRALKDYAFKHELSKELCHIFS 237

Query: 751 VSQGNVVGRVEEIWEEYRKLQ 771
                ++  + +  +E +K++
Sbjct: 238 CKDHEILTMLNKSLDEKKKIE 258


>gi|297834538|ref|XP_002885151.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330991|gb|EFH61410.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 256

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 28/230 (12%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           ++ ++ D T F+ + GGQ  DTG  +  G   +  + DV+ K +GI +H+ + E     +
Sbjct: 33  RIALILDSTLFHPQGGGQPADTGLIVFSGSDFKFSVQDVRSK-DGIVLHYGVFEGSNPES 91

Query: 568 EMSL------VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            M +       +T+D   R+  S  HSA HLL   +  +   H+        PDG   + 
Sbjct: 92  GMDIEKGKEVYVTVDESRRKLNSRLHSAGHLLDLCMQKVGLGHLEPGKGYHFPDGPFVEY 151

Query: 622 THSKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--- 676
             S P    + + K +E   ND+I +   V   I+  E+     A+ L G    D +   
Sbjct: 152 KGSVPQGQMAVKQKELEAEANDLITKGGKVYAAILPYEE-----ASVLCGGNLPDYISKG 206

Query: 677 ---RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              R++ +     G      CGGTHVS   +I+ +  V++   + GI ++
Sbjct: 207 STPRIIKL-----GDSPGCPCGGTHVSDLSDIIAMK-VTQMRTKKGITKV 250


>gi|229825552|ref|ZP_04451621.1| hypothetical protein GCWU000182_00912 [Abiotrophia defectiva ATCC
           49176]
 gi|229790115|gb|EEP26229.1| hypothetical protein GCWU000182_00912 [Abiotrophia defectiva ATCC
           49176]
          Length = 400

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 159/386 (41%), Gaps = 60/386 (15%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E+V DQT F+ EAGGQ  D G        ++  D     E + + +  V   I+R+E+ L
Sbjct: 34  ELVLDQTLFFPEAGGQSCDKG-------SIKTGDSTTTVERVIIDNEDVITHIIRSELPL 86

Query: 572 ----------VLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPD 615
                        ID+ +R      HSA H+        +    + G H+S N   +T D
Sbjct: 87  QPDSLIGIEIAGMIDWTHRFSNMQQHSAEHIFSGIVHRKYGFENV-GFHLSDNN--VTMD 143

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKY 672
                  +S  +T  ++  IE   N +IAQN+ +     N    +D      + L G   
Sbjct: 144 -------YSGYLTPEQVAEIEFETNRVIAQNISITCYYPNENELKDIDYRCKSELSGD-- 194

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              +R+V ++    GV   A C   HV  TGEI L+ ++S    + G  R+  + G RA 
Sbjct: 195 ---IRIVEIK----GVDICACC-CPHVKQTGEIGLMKVISSVRYKGGT-RLSILCGFRAL 245

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +      ++  L S L   QG +V  V  +  E  +L+  +  R++  N+       + 
Sbjct: 246 EYFNSIYAQMGELKSLLSAEQGEIVNTVTLLKNERDELK--NKLREVNRNLLISEIDNLP 303

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           D +       E++ K  +  ++ L  K  +   +L G   +KK    ++ +       N 
Sbjct: 304 DGSPSLIFADEINPKSQREALNYLISKRDNYCGILSG--NDKKGYSYLIGS-------NN 354

Query: 853 VDLARLSAKVLGG--GGGGGRPHMAQ 876
           +D   + AK+  G    GGG+  M Q
Sbjct: 355 LDSVLVQAKLKEGLNAKGGGKKEMIQ 380


>gi|288556728|ref|YP_003428663.1| hypothetical protein BpOF4_18650 [Bacillus pseudofirmus OF4]
 gi|288547888|gb|ADC51771.1| hypothetical protein BpOF4_18650 [Bacillus pseudofirmus OF4]
          Length = 398

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 160/390 (41%), Gaps = 56/390 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ----KKAEGIFVHHAIVERGILRTE 568
           +V DQT FY   GGQ  D G         Q+ DV+    ++ EG   H+  V+  +L T 
Sbjct: 31  LVLDQTVFYPTGGGQPCDRG---------QLDDVEITLVEEVEGEIRHY--VQSPLLETG 79

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   ID+  R      H+  H+L  A + + G      G  +  + +  D+   + +T
Sbjct: 80  QTVHGQIDWSRRFDHMQQHAGQHILSAAFAELFGYQTV--GFHLGTEEVTIDLEIPQ-LT 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E + +    N+II +N  +  R ++ E+A        L  K + R+ V+  +++  G 
Sbjct: 137 IDEAEKVVHYANEIIQENRVIEARWVSEEEANRYPLRKALSVKGDIRL-VIIPDFDYNG- 194

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR-----ARSH--------- 734
                CGGTH   T E+  L I      R  I RI  + G R     AR +         
Sbjct: 195 -----CGGTHPKQTLEVQGLSITGWEKQRNNI-RISFLCGNRVFKQFARHNQILQKLSQT 248

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  Q  KL   A+ L V Q      +E+I     K +L+  +    LN    SC  +++ 
Sbjct: 249 LNAQYIKLPEKATSLIVKQKEADKELEQI-----KSELLKYEAAELLN----SCEVVSNQ 299

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           + +         KEL+ +   + ++    ++  V  + EK   V+ V         N+V 
Sbjct: 300 SRLFKRFKNRSIKELQQLAKDVVEENDQAVVFFVSETAEKTQLVMAVGKA-----VNSVQ 354

Query: 855 LARLSAKVLG--GGGGGGRPHMAQSGGPNG 882
              +  KVL    G GGG  H AQ GG  G
Sbjct: 355 ANMMMKKVLPYLDGRGGGNQHFAQGGGNKG 384


>gi|319791439|ref|YP_004153079.1| alanyL-tRNA synthetase, class iic-like protein [Variovorax
           paradoxus EPS]
 gi|315593902|gb|ADU34968.1| Alanyl-tRNA synthetase, class IIc-like protein [Variovorax
           paradoxus EPS]
          Length = 252

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 24/226 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK--KAEGI----FVHHAIVERGIL 565
           +V D+T FY   GGQ GD G  A+ DG  + I D +K    EG     FVH    ++  L
Sbjct: 27  IVLDRTVFYPLGGGQAGDAGVLALADGREVAIADTRKAKNEEGQPTNEFVHVPAPDQAEL 86

Query: 566 RTEM----SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              +    ++   +D++ R +L   H+A+HLL H +       V  NG  ITPD  R D 
Sbjct: 87  LAALKPGDTVTARLDWERRHRLMRFHTASHLLCHLVP------VPVNGCSITPDYARIDF 140

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVR 677
             + P+    L +    +  ++    P+    ++ E+  A+ A     ++   +    VR
Sbjct: 141 HMTDPLDKEALTA---GLARLVEAAHPLTVGAISDEELDANPALVKSMSVQPPRGTGTVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            + +  E         CGGTHV++T EI  + +       A  RR+
Sbjct: 198 TIRIGGEGETQIDFQPCGGTHVANTAEIGTVVVTKIEKKSANSRRV 243


>gi|306840537|ref|ZP_07473296.1| alanyl-tRNA synthetase [Brucella sp. BO2]
 gi|306289552|gb|EFM60770.1| alanyl-tRNA synthetase [Brucella sp. BO2]
          Length = 247

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     + +      
Sbjct: 31  IILDRTNFYATSGGQPGDTGFFERVDGSRIEIATTVTGETKNEIVHMPAQGQQMPDVGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL ID+Q R +L   H+A HLL       I G+ V ++ S +      FD+    P  S
Sbjct: 91  LVLHIDWQRRYKLMRMHTACHLLSVVCPFPITGAAVGEDESRVD-----FDL----PDQS 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEY 683
              +S+ + + +++  N PV    ++ E+ +A+    ++ +K         R+R+V++  
Sbjct: 142 YTKESVTEKLMELVQANAPVSIHWISDEEFLAN--PDIVKSKNVRPPVGLGRIRLVAIG- 198

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
           E+G V S   CGGTHV  T E+  ++I
Sbjct: 199 ENGSVDSQP-CGGTHVCETQEVGEIHI 224


>gi|90419363|ref|ZP_01227273.1| possible alanyl-tRNA synthetase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336300|gb|EAS50041.1| possible alanyl-tRNA synthetase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 251

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 18/205 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMS 570
           +VF +T F+A  GGQ GDTG     DG +++I D    A+   +   + +   L +   +
Sbjct: 36  LVFARTNFFAAGGGQPGDTGFVETADGRQVKIVDTVYAADKSTILMLVEDDAALPQPGET 95

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL +D++ R +L   H+A HLL       I G+ V ++ S +      FD+    P   
Sbjct: 96  LVLHVDWKRRYKLMRMHTACHLLTVVCPFPITGAAVGEDESRVD-----FDIPEGAP-DK 149

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
           AE+ +    + +++  N PV TR ++  +  A+     +A +   +   R+R+V V   D
Sbjct: 150 AEVTA---GLMELVEANHPVFTRWISDAELDANPGLVKSANVKPPRGTGRIRLVCV--GD 204

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYI 710
            G   +  CGGTHV  TGE+  ++I
Sbjct: 205 EGAVDTQPCGGTHVLETGEVGEIHI 229


>gi|91773034|ref|YP_565726.1| Ala-tRNA(Pro) hydrolase [Methanococcoides burtonii DSM 6242]
 gi|91712049|gb|ABE51976.1| Threonyl/alanyl tRNA synthetase second additional domain
           [Methanococcoides burtonii DSM 6242]
          Length = 234

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 14/214 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY  +GGQ  DTG  + D     +T V K    I   H + E G L+    + 
Sbjct: 27  VVLNRTAFYPSSGGQPHDTGKLVCDRKEYPVTFVGKFDGKI--SHEVSEAG-LKAGDKVK 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            TID+  R      H+A H+L   + +  G+ +S  G+ I  +  R D  + +      +
Sbjct: 84  GTIDWDRRSLFMKYHTAAHILSAMIHSETGAKIS--GNQIAEEKTRVDF-NLEDFDRELI 140

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVH 689
            S E  VN+II + + V   I+ R++A+   +   L   +    + +RV+ +   D    
Sbjct: 141 GSYEAKVNEIIDRKIDVEIEILPRDEALKIPSVVKLKDAFPPEIEEIRVIRIPDVD---- 196

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               CGGTHV++TGEI  + I    +     RRI
Sbjct: 197 -DQACGGTHVANTGEIPHIEIFKAENKGKNNRRI 229


>gi|226510067|ref|NP_001142842.1| hypothetical protein LOC100275233 [Zea mays]
 gi|195610446|gb|ACG27053.1| hypothetical protein [Zea mays]
          Length = 233

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 16/165 (9%)

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRVV+V     G+ S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ G     ++
Sbjct: 2   VRVVAVP----GI-SLELCGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFVDYV 56

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA--- 792
             +D  ++ L   LKV   +V  RVE I EE R  +  +    L+  +  L    +A   
Sbjct: 57  CARDNYMRRLCLSLKVKAEDVNSRVETILEELRATR--NEASSLRSKIAVLKAASLASRA 114

Query: 793 ------DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                 +V  +   + +VD+  LKS  + L   ++    +++G S
Sbjct: 115 TTVEPQNVRIVVENMGDVDADGLKSAAEHLIDTLKDPAAVILGSS 159


>gi|311031431|ref|ZP_07709521.1| hypothetical protein Bm3-1_12936 [Bacillus sp. m3-13]
          Length = 400

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 167/401 (41%), Gaps = 47/401 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            V +QT FY E GGQ  DTG  + D    ++T+VQ +  G   H+  +E+ +  T   + 
Sbjct: 31  AVLEQTAFYPEGGGQPYDTGI-LDDH---KVTEVQ-EINGEIRHY--LEQPLPETTQDVT 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+  HLL  A   +        H+ +  S I  D        +K +
Sbjct: 84  GNINWERRYDHMQQHAGQHLLSAAFEELFSYKTKSFHLGKEASTIDLD--------AKGL 135

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E+   E  VN II +N  +  + + +E+         L    N R+ V+  +++  G
Sbjct: 136 TEQEILETETLVNKIILENRKIEAKWVTKEELSDYPLRNELSVSENIRL-VIIPDFDYNG 194

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 CGGTH  STG +  L I+S    +  I R+  + G R    L  + E L  L+S
Sbjct: 195 ------CGGTHPHSTGGVASLKILSLEKQKNMI-RVSFVAGNRVLKQLHEKQEVLSELSS 247

Query: 748 FLKVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMS 798
            L   Q         ++G+ +E  +E + ++    +R L+     L      ++  + + 
Sbjct: 248 LLNAPQNGMSDTVTRMLGQSKEQAKELKDMK----ERLLEYEAAALVSQTELVSGRSIIK 303

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLAR 857
            ++   +  EL+S+   L    +   + L+  +  K   V    +E  LD +F A ++  
Sbjct: 304 SVLQNREMAELQSMARKLVSTREDLNVFLIAENTGKLQFVGARGSESDLDMKFIANEVF- 362

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   G GGGR +  Q GG      ++ I  +   L K
Sbjct: 363 ----AFINGKGGGRENFVQGGGETTLTGEEVIERIMLILLK 399


>gi|310821145|ref|YP_003953503.1| threonyl/alanyl tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394217|gb|ADO71676.1| Threonyl/alanyl tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 400

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 23/273 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           G +V  A       ++ D+T FY EAGGQ+ D G   G  +R    DVQ    G+ VHH 
Sbjct: 19  GRVVAHAAWNGAPSIILDRTAFYPEAGGQMADRGVLGGAVVR----DVQVDDAGL-VHHV 73

Query: 559 I-VERGILRTEMSLVLT--IDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCIT 613
           + +  G    E+   L   ID   RR     H+  H+L  AL  +  +H   S+ G  + 
Sbjct: 74  LELSEGGALPEVGAELPGEIDRVRRRLHMALHTGQHMLSRALVDVANAHTVSSRLGETLC 133

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
              +  DV   + +  A     E+ VN +I  ++ +       E+  A         K  
Sbjct: 134 TIDVDLDVLDERKVAEA-----EEFVNAVIEDDVAIRAFFPTPEELAA--LPLRRQPKVT 186

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +RVV ++  D      + CGGTH + + ++ ++ ++     + G  R+    G+RARS
Sbjct: 187 ENIRVVQIDGFD-----VSPCGGTHCTRSAQVGMIRVLGVERNK-GKGRVLFSAGRRARS 240

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            L  +   L+ L+       G V   ++++  E
Sbjct: 241 ELWAEAGTLRGLSRAFTCGPGEVPTSIDKLRRE 273


>gi|239813741|ref|YP_002942651.1| threonyl/alanyl tRNA synthetase SAD [Variovorax paradoxus S110]
 gi|239800318|gb|ACS17385.1| Threonyl/alanyl tRNA synthetase SAD [Variovorax paradoxus S110]
          Length = 249

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 24/226 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQ--KKAEGIFVHHAIVERGILRTEM 569
           +V D+T FY   GGQ GDTG  A+ DG  L I D +  K  EG      +      + E+
Sbjct: 27  IVLDRTVFYPLGGGQAGDTGVLALADGRELAIADTRKVKNEEGQPTQEVVHVPAPGQAEL 86

Query: 570 --------SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                   ++   +D++ R +L   H+A+HLL H +       V  NG  ITPD  R D 
Sbjct: 87  LAALEPGAAVTARLDWERRHRLMRFHTASHLLCHLVP------VPVNGCSITPDYARIDF 140

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVR 677
             + P+    L +    +  ++    P+    +  E+  A+ A     ++   +    VR
Sbjct: 141 HMTDPLDKEALTA---GLARLVEAAHPLTVGAITDEELDANPALVKSMSVQPPRGTGTVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            + +  E         CGGTHV++T EI  + +       A  RR+
Sbjct: 198 TIRIGGEGEAQIDFQPCGGTHVANTAEIGAVMVTKIEKKSANSRRV 243


>gi|297530207|ref|YP_003671482.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. C56-T3]
 gi|297253459|gb|ADI26905.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. C56-T3]
          Length = 389

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 23/263 (8%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G+   V   +T FY E GGQ  D G   G    L + DV  +  G   H      G    
Sbjct: 26  GETYVVTLAETAFYPEGGGQPSDAGTIAG----LPVLDVFDE-NGEVYHRLPAHPG---- 76

Query: 568 EMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            M +V   +D + RR  +  HS  HLL       LG+     G  +  D +  D+T    
Sbjct: 77  -MGVVSCVLDMKRRRDHTQQHSGQHLLSAVFIEQLGAETV--GFHLGRDVVTIDIT-VDA 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T +E+ ++E+  N++I  NLPV T  +  E+A           + N  VRVV ++    
Sbjct: 133 LTESEMLAVENRANELIYANLPVDTYWVTPEEAERMPFRKRPDVQGN--VRVVEMK---- 186

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G+  SA C GTHV  TGEI ++ ++     R G+ R+  + G RA +        +++ A
Sbjct: 187 GIDLSACC-GTHVKRTGEIGVIKLLKAERHR-GMTRLSFLCGGRALADYQQTHRVVQAAA 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRK 769
                S+  ++  + + WE+ +K
Sbjct: 245 GRFGTSRNQLLEVIAK-WEQEKK 266


>gi|251779379|ref|ZP_04822299.1| dhha1 domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083694|gb|EES49584.1| dhha1 domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 399

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 179/402 (44%), Gaps = 40/402 (9%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G +  +V D+T F+   GGQ  D    +G    +++ +V +K + I+    +++R   R 
Sbjct: 25  GNEFHIVLDKTAFFPGGGGQRHD----LGKIDEIEVLNVYEKDDLIY---HVLDRKPSRI 77

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++  +ID+  RR   +NH   HL  H LS       + N   +        +  +  +
Sbjct: 78  H-NVKCSIDWL-RRLDGMNH---HLAQHILSASFFKLFNINTIAVHHGNEFSTIDFNSIL 132

Query: 628 TSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           T  +++S E   ND+I ++L V       RE         L  T  N+++R+V ++  D 
Sbjct: 133 TEEQVRSCEKYANDVIGESLDVEFLTPTKRELKNMKLRRDLPDT--NEQIRIVKIDDLDL 190

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C G H  ST ++ L+ I      + G  RIE ITG +A S  + +D    S+ 
Sbjct: 191 NA-----CCGVHPKSTLDLRLIKIKKYEKHKKG-SRIEFITGSKAVSDSLEKDSFANSMC 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI----ADVNFMSHIIS 802
            +L  ++   +  +E +  E +   +++  + + + + +    +I    A +N + HII 
Sbjct: 245 KYLNCNEKEALNGIENLKLELK--NVLNENKNISIELSNYEIKEIIENSAQINDI-HIIK 301

Query: 803 EV-DSKELKSVMDAL-QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL-- 858
            V ++K LK V   + Q   +   I L+ +  + K +++   ++++ +    V++  L  
Sbjct: 302 YVYNNKTLKFVNTIISQITEKDNKIALIALVNDDKINLIFSCSKNIKN----VNMGELLK 357

Query: 859 SAKVLGGGGGGGRPHMAQSGGPN----GNKADQAIAGVASFL 896
            A VL  G GGG   MAQ  G N     N  D A   + S L
Sbjct: 358 DAIVLIDGRGGGNQTMAQGAGKNLLNLDNTLDYAFNKLKSML 399


>gi|308160674|gb|EFO63149.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia P15]
          Length = 401

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 122/263 (46%), Gaps = 19/263 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V V    + F+ ++GGQLGD G +IG G+ +  T+  +    +   H +       TE+ 
Sbjct: 25  VYVRLSHSYFFPQSGGQLGDVG-SIG-GLPVITTNCDEDHRPL---HLMATAPPSDTELD 79

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
             +   Y  RRQ SI+H+  H+  +       +  S     + P+    ++  S  +   
Sbjct: 80  CSVNAVY--RRQNSISHTGQHIFSNVAEQCFQAITSSYT--MGPELSTLEL--SVKLDMD 133

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +L  IE+  NDII Q +PV + +++ E+ +   SG +       N  +R+V +E  D   
Sbjct: 134 KLLEIENRTNDIIRQCIPVKSILIHSEEELGQYSGLSRSKLKSLNFPLRIVDIEGVD--- 190

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               LC GTH S+TGE  L+ +    S R G+ +++   G RA S +  + + L  + + 
Sbjct: 191 --VCLCCGTHASNTGECGLVKVFGCESSRGGV-KVQFAVGDRAISLINNRLKTLSIICAS 247

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQ 771
           L      VV  VE +  E + L+
Sbjct: 248 LTTGHDAVVKSVETLLSEGKALR 270


>gi|146276871|ref|YP_001167030.1| threonyl/alanyl tRNA synthetase, SAD [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555112|gb|ABP69725.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides ATCC 17025]
          Length = 239

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 15/209 (7%)

Query: 503 EEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           E  V+G   E  ++ D++ FY   GGQ GD+GC + +G R+ I     KAEG  V     
Sbjct: 16  EARVTGHTAEGGILIDRSIFYPTGGGQPGDSGCLVWEGGRIPIA-TAIKAEGGRVALVPA 74

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E   L  E + V  I   +RR     H   H   H LS ++   V+  G  I  +  R D
Sbjct: 75  EAAALPPEGAPVRQILDWDRRH---RHMRVHTALHLLSVVIPLPVT--GGQIGAERGRLD 129

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRV 676
               +P   A++ ++E+ +N ++ ++LPV    +   + +A  +     +++      RV
Sbjct: 130 FDMPEP--PADVAALEEALNALVGRDLPVSEDWITDAELLADPSIVKTMSVMPPTGQGRV 187

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           R+V +      V     CGGTHV+ TGEI
Sbjct: 188 RLVRIGQGADQVDLQP-CGGTHVARTGEI 215


>gi|169344498|ref|ZP_02865467.1| DHHA1 domain protein [Clostridium perfringens C str. JGS1495]
 gi|169297418|gb|EDS79527.1| DHHA1 domain protein [Clostridium perfringens C str. JGS1495]
          Length = 400

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 179/404 (44%), Gaps = 42/404 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD    + DGI+  + DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDL--GLIDGIK--VLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCI 612
              E   L+   +L   +D++ R      H   HLL      + G+     H+ +  S +
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              G          +    ++  E   N +I +NL V +   ++++         L  K 
Sbjct: 127 DIVGF---------LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRAL-PKT 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +     G+  +A C G H  +T ++ ++ I      +    RIE + G RA 
Sbjct: 177 DEEIRIVEI----VGLDLNACC-GVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAGNRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------ 786
           S    +DE L  +   LK  +G+ +  V+ + E  +   L+   RK++  + D       
Sbjct: 231 SDFFTKDEILGEICKLLKSGEGDTLNAVKNLLENNK--NLVDENRKVKAEIGDYKIKEML 288

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +I  +  ++ I    D+K +  + + + ++ ++  I+L  +   ++ +++   ++D
Sbjct: 289 NKSERIGSITLVNEIFDGEDTKHIGKLANKITEEYEA--IVLFAVKNGERVNLIFNSSKD 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + N  D+ + +  ++ G GGG +   AQ GG N    + AI
Sbjct: 347 -MKKVNMSDILKDTITLIDGRGGGNQ-FAAQGGGKNNGNTEVAI 388


>gi|83745752|ref|ZP_00942809.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Ralstonia solanacearum UW551]
 gi|207743664|ref|YP_002260056.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           IPO1609]
 gi|83727442|gb|EAP74563.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Ralstonia solanacearum UW551]
 gi|206595063|emb|CAQ61990.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 239

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 27/211 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVER- 562
           AV  + VE+  DQT FYA +GGQ GD G   + DG  + I D    A+   + H   +  
Sbjct: 22  AVHPEGVEL--DQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSADRQTILHVPADPA 79

Query: 563 --GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G+L   + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 80  DLGLLAPGVPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYND 674
                P ++ E +++   +N +I ++ PV   ++  E    S   AL+ T          
Sbjct: 134 F--DLPESTLERETLTAQLNALIERDTPVRIDLITPE--ALSAQPALVRTAGAAPPAGMA 189

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +R+V +E    GV     CGGTHV +TGEI
Sbjct: 190 AIRIVEIE----GVDRQP-CGGTHVRATGEI 215


>gi|300704680|ref|YP_003746283.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299072344|emb|CBJ43678.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 239

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 29/212 (13%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVER- 562
           AV  + VE+  DQT FYA +GGQ GD G   + DG  + I D     +   + H   +  
Sbjct: 22  AVHPEGVEL--DQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSTDRQTILHVPADPA 79

Query: 563 --GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G+L   + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 80  DLGLLAPGVPVSAAIDWPRRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-------SGAAALLGTKYN 673
                P ++ E +++   +N +I ++ PV   ++  E   A       +GAA   G    
Sbjct: 134 F--DLPESTLERETLTAQLNALIERDTPVRIDLITPEALAAQPELVRTAGAAPPAGMT-- 189

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             +R+V +E    G+     CGGTHV +TGEI
Sbjct: 190 -AIRIVEIE----GIDRQP-CGGTHVRATGEI 215


>gi|317404689|gb|EFV85081.1| Ala-tRNA(Pro) hydrolase [Achromobacter xylosoxidans C54]
          Length = 237

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 29/219 (13%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFV 555
           +Q + +  AV    VE+  DQT  YA +GGQ GD+G   + DG  L +TD     E   +
Sbjct: 15  RQCDAIVIAVGADGVEL--DQTVCYARSGGQAGDSGTLTLADGRVLALTDTVYADERRRI 72

Query: 556 HHAIVERGILRTEMS--LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            H + E G+    +   + + ID+  R +L   H+  HL    L  ++ + V+  G  I+
Sbjct: 73  VHVLAE-GVAPPPVGERVTVAIDWPRRHRLMRLHTCLHL----LGALVPAPVT--GCSIS 125

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAA 666
           PD  R D     P ++ +   + + +N +I     V    +  E+  A        GAA 
Sbjct: 126 PDSARIDF--DLPESTLDKADLTERLNALITAATDVTVNAITPEELAAQPDLVRTIGAAP 183

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             GT   +R+R++ +     GV     CGGTHV++TGEI
Sbjct: 184 PAGT---ERIRIIEIP----GVDRQP-CGGTHVANTGEI 214


>gi|115390396|ref|XP_001212703.1| hypothetical protein ATEG_03525 [Aspergillus terreus NIH2624]
 gi|114195099|gb|EAU36799.1| hypothetical protein ATEG_03525 [Aspergillus terreus NIH2624]
          Length = 303

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 15/155 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +    +T  +++ ++      I 
Sbjct: 1   MNHTGTHILNFALREVLGKDVKQKGSLVAPEKLRFDFSFKASLTEKDIERVQQISYKYIQ 60

Query: 645 QNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEYEDGGVHSSA 692
            +  V    +  E A    G  A+ G  Y D  RVVS           V  +D   +S  
Sbjct: 61  DDQQVFVSDVALEKARQIEGVQAVSGETYPDPTRVVSIGVSVDTLVDNVSNKDWWNYSIE 120

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            CGGTHV +      + I+     RA  RR+E IT
Sbjct: 121 FCGGTHVQAELATTAVSILDR---RALSRRLEEIT 152


>gi|320166188|gb|EFW43087.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 410

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 112/258 (43%), Gaps = 39/258 (15%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T  + E GGQ  DTG    +G    +  V+K A  + VHH    +  L        T+D+
Sbjct: 28  TVLFPEGGGQPHDTGSV--NGTVAVVAVVRKGA--VAVHHT---QSPLEPGTPAHQTVDW 80

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R      HSA HL+    S   G   +      T   +  D+   +P+T   ++ +ED
Sbjct: 81  KRRWDHMQQHSAQHLITAVASDQFGLKTTSWSLGATKSTI--DLVGERPLTDEVMQQLED 138

Query: 638 NVNDIIAQ-----------NLPVVTRIMNR---EDAIASGAAALLGTKYNDRVRVVSVEY 683
            VN+IIA+           N P +  + +R   ED +ASGAA          +RVVS+  
Sbjct: 139 KVNEIIAEGRDVVATTYQPNSPELMAVRSRGLPEDVLASGAA----------IRVVSI-- 186

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             GG+  +  C GTHV ST  +  + ++   + R G  R+  + G+R R+ L      ++
Sbjct: 187 --GGLDVNTCC-GTHVKSTAHLQTVKLLHTEASRGG-SRLHFVAGERTRALLGAMYSDMR 242

Query: 744 SLASFLKVSQGNVVGRVE 761
           +L          VV R E
Sbjct: 243 TLGKSFTCGLELVVDRAE 260


>gi|168217153|ref|ZP_02642778.1| DHHA1 domain protein [Clostridium perfringens NCTC 8239]
 gi|182380730|gb|EDT78209.1| DHHA1 domain protein [Clostridium perfringens NCTC 8239]
          Length = 400

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 176/404 (43%), Gaps = 42/404 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+      + DGI+  + DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQM--GDLGLIDGIK--VLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCI 612
              E   L+   +L   +D++ R      H   HLL      + G+     H+ +  S +
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTYGFHLGKEVSTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              G          +    ++  E   N +I +NL V +   ++++         L  K 
Sbjct: 127 DIVGF---------LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRAL-PKT 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +     G+  +A C G H  +T ++ ++ I      +    RIE + G RA 
Sbjct: 177 DEEIRIVEI----VGLDLNACC-GVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAGNRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------ 786
           S    +DE L  +   LK  +G+ +  V+ + E  +   L+   RK++  + D       
Sbjct: 231 SDFFTKDEILGEICKLLKSGEGDTLNAVKNLLENNK--NLVDENRKVKAEIGDYKIKEML 288

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +I  +  ++ I    D+K +  + + + ++ ++  I+L  +    + +++   ++D
Sbjct: 289 NKSERIGSITLVNEIFDGEDTKHIGKLANKITEEYEA--IVLFAVKNGDRVNLIFNSSKD 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + N  D+ + +  ++ G GGG +   AQ GG N    + AI
Sbjct: 347 -MKKVNMSDILKDTITLIDGRGGGNQ-FAAQGGGKNNGNTEVAI 388


>gi|289677328|ref|ZP_06498218.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 174

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 8/162 (4%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I L  IVSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++ 
Sbjct: 1   TGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLT 60

Query: 762 EIWEEYR----KLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDA 815
            + E  R    +L+ + AK       +DLS     +  V  ++  +   D K L +++D 
Sbjct: 61  AVIERNRLLEKQLEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQ 119

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           L+ K+   +I+L G   E K  ++  VT+DL  +  A DL +
Sbjct: 120 LKNKLGRAVILL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMK 160


>gi|309781113|ref|ZP_07675851.1| threonyl and alanyl tRNA synthetase domain protein [Ralstonia sp.
           5_7_47FAA]
 gi|308920179|gb|EFP65838.1| threonyl and alanyl tRNA synthetase domain protein [Ralstonia sp.
           5_7_47FAA]
          Length = 239

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 21/201 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTE 568
           +  D T FYA +GGQ GDTG   + DG  + I D     +   V H   +     +L   
Sbjct: 28  IELDATVFYARSGGQAGDTGTLVLADGTTIAIADTVYSPDRQTVLHVPADNAGLTLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++  TID+  R +L   H+  HLL   +       V   G  I+PD  R D     P +
Sbjct: 88  TAITATIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDAGRIDF--DLPES 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
           + +  ++   +N++I +N PV   ++  E+  A                  +R++ ++  
Sbjct: 140 TLDRDTLTTQLNELIGRNTPVRIDLITPEELPAQPELVRTIGAAPPAGASAIRIIHID-- 197

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
             G+     CGGTHV +TGEI
Sbjct: 198 --GIDRQP-CGGTHVRATGEI 215


>gi|228905303|ref|ZP_04069285.1| TRNA synthetase-related protein [Bacillus thuringiensis IBL 4222]
 gi|228854340|gb|EEM99016.1| TRNA synthetase-related protein [Bacillus thuringiensis IBL 4222]
          Length = 207

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 42/205 (20%)

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH--HAIVERGI--------- 564
           +QT FY E GGQ+GD G   G+    ++ D QK    +F H    I++ G          
Sbjct: 2   NQTVFYPEGGGQIGDQGWIEGN----EVIDTQKTGGNLFYHSNFPIIKVGSEVAHILKEP 57

Query: 565 ---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              LR  M +   I+++ R  L   H+A HL+++    + G    + G  I  D  RFD 
Sbjct: 58  VKGLREGMEVKAKINWERRHMLMRMHAAAHLVYYYTFQVFGEMYVK-GCHIAEDRARFDF 116

Query: 622 -THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +  K +    L  +E+  N I+  N+P+    +N E                      +
Sbjct: 117 YSPDKRLDREGLDKVEEFANLIVTDNIPIKNIPLNEEPE--------------------A 156

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEI 705
           + +  G +H    CGGTHV  TG+I
Sbjct: 157 INWICGDMHIP--CGGTHVRQTGDI 179


>gi|18309700|ref|NP_561634.1| DHHA1 domain protein [Clostridium perfringens str. 13]
 gi|110799085|ref|YP_695166.1| DHH domain-containing protein [Clostridium perfringens ATCC 13124]
 gi|168214312|ref|ZP_02639937.1| DHHA1 domain protein [Clostridium perfringens CPE str. F4969]
 gi|18144377|dbj|BAB80424.1| truncated alanine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110673732|gb|ABG82719.1| DHHA1 domain protein [Clostridium perfringens ATCC 13124]
 gi|170714209|gb|EDT26391.1| DHHA1 domain protein [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 178/404 (44%), Gaps = 42/404 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD    + DGI+  + DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDL--GLIDGIK--VLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCI 612
              E   L+   +L   +D++ R      H   HLL      + G+     H+ +  S +
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              G          +    ++  E   N +I +NL V +   ++++         L  K 
Sbjct: 127 DIVGF---------LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRAL-PKT 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +     G+  +A C G H  +T ++ ++ I      +    RIE + G RA 
Sbjct: 177 DEEIRIVEI----VGLDLNACC-GVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAGNRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------ 786
           S    +DE L  +   LK  +G+ +  V+ + E  +   L+   RK++  + D       
Sbjct: 231 SDFFTKDEILGEICKLLKSGEGDTLNAVKNLLENNK--NLVDENRKVKAEIGDYKIKEML 288

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +I  +  ++ I    D+K +  + + + ++ ++  I+L  +    + +++   ++D
Sbjct: 289 NKSERIGSITLVNEIFDGEDTKHIGKLANKITEEYEA--IVLFAVKNGDRVNLIFNSSKD 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + N  D+ + +  ++ G GGG +   AQ GG N    + AI
Sbjct: 347 -MKKVNMSDILKDTITLIDGRGGGNQ-FAAQGGGKNNGNTEVAI 388


>gi|110801783|ref|YP_698031.1| DHH domain-containing protein [Clostridium perfringens SM101]
 gi|110682284|gb|ABG85654.1| DHHA1 domain protein [Clostridium perfringens SM101]
          Length = 400

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 181/404 (44%), Gaps = 42/404 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD    + DGI+  + DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDL--GLIDGIK--VLDVYEE-EGKVYH- 68

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCI 612
            I+E+   + + +L   +D++ R      H   HLL      + G+     H+ +  S +
Sbjct: 69  -ILEKEPKKFK-NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              G          +    ++  E   N +I +NL V +   ++++         L  K 
Sbjct: 127 DIVGF---------LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRAL-PKT 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +     G+  +A C G H  +T ++ ++ I      +    RIE + G RA 
Sbjct: 177 DEEIRIVEI----VGLDLNACC-GVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAGNRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------ 786
           S    +DE L  +   LK  +G+ +  V+ + E  +   L+   RK++  + D       
Sbjct: 231 SDFFTKDEILGEICKLLKSGEGDTLNAVKNLLENNK--NLVDENRKVKAEIGDYKIKEML 288

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +I  +  ++ I    D+K +  + + + ++ ++  I+L  +    + +++   ++D
Sbjct: 289 NKSERIGSITLVNEIFDGEDTKHVGKLANKITEEYEA--IVLFAVKNGDRVNLIFNSSKD 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + N  D+ + +  ++ G GGG +   AQ GG N    + AI
Sbjct: 347 -MKKVNMSDILKDTITLIDGRGGGNQ-FAAQGGGKNNGNTEVAI 388


>gi|261419834|ref|YP_003253516.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC61]
 gi|319766649|ref|YP_004132150.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC52]
 gi|261376291|gb|ACX79034.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC61]
 gi|317111515|gb|ADU94007.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC52]
          Length = 389

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 118/263 (44%), Gaps = 23/263 (8%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G+   V   +T FY E GGQ  D G   G    L + DV  +  G   H      G    
Sbjct: 26  GETYVVTLAETAFYPEGGGQPSDAGTIAG----LPVLDVFDE-NGEVYHRLPAHPG---- 76

Query: 568 EMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            M +V   +D + RR  +  HS  HLL       LG+     G  +  D +  D+T    
Sbjct: 77  -MGVVSCVLDMKRRRDHTQQHSGQHLLSAVFIEQLGAETV--GFHLGRDVVTIDIT-VDA 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T +E+ ++E+  N++I  NLPV T  +  E+A           + N  VRVV ++    
Sbjct: 133 LTESEMLAVENRANELIYANLPVDTYWVTPEEAERMPFRKRPDVQGN--VRVVEMK---- 186

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           GV  SA C GTHV  TGEI ++ ++     R G+ R+  + G RA +        +++ A
Sbjct: 187 GVDLSACC-GTHVKRTGEIGVIKLLKAERHR-GMTRLSFLCGGRALADYQQTHHIVQAAA 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRK 769
                S+  ++  + + WE+ +K
Sbjct: 245 GRFGTSRDQLLEVIVK-WEQEKK 266


>gi|195587928|ref|XP_002083713.1| GD13880 [Drosophila simulans]
 gi|194195722|gb|EDX09298.1| GD13880 [Drosophila simulans]
          Length = 466

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 118/252 (46%), Gaps = 16/252 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-------LQITDVQKKA 550
           QG  +++  S   + +V   + FY E+GGQ  D G  +    +       L++  V K  
Sbjct: 12  QGSRIQQP-STDLISIVTAASNFYYESGGQQSDGGKILVSNHQHPEHPHSLEVISV-KHL 69

Query: 551 EGIFVHHAIVERGILRTEMSL----VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
               VH   +       ++++     L +D Q R+  + +H+ATHLL+ A+ ++      
Sbjct: 70  NDCVVHVCKLSSPTDTFQLAIGDEVELLVDAQQRQLNTCHHTATHLLNAAIRSLFKKVTY 129

Query: 607 QNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           Q  S +T D  + ++    K I  ++++ IED +N +I    PV  ++++  + +     
Sbjct: 130 QVSSSVTSDQCKLELGLLGKRIQKSDVQLIEDLINRVICSAAPVEVQLLSAAEVLEQNDI 189

Query: 666 ALL-GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            ++ G  Y ++ +R+V+VE  +  + S  LC GTH ++T E+    IV+           
Sbjct: 190 TMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFCIVNLKQTNRARFAF 249

Query: 724 EAITGQRARSHL 735
            A+ GQ A + L
Sbjct: 250 TAVAGQAAENVL 261


>gi|302423985|ref|XP_003009819.1| tRNA_SAD domain-containing protein [Verticillium albo-atrum
           VaMs.102]
 gi|261361653|gb|EEY24081.1| tRNA_SAD domain-containing protein [Verticillium albo-atrum
           VaMs.102]
          Length = 265

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 25/206 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           V  DQT FYA+ GGQ  DTG       GD  +  +T V+K  EG  +H    E       
Sbjct: 50  VATDQTFFYAQGGGQPADTGTMTSMITGDAAKFHVTGVRKTTEGTILHLGSFEDSPFEKS 109

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   ID   RR  S  H A H++  A+  +  +          PD       H     
Sbjct: 110 DLVTQKIDMDKRRLHSKIHDAGHIISSAVRKLADA---------IPDITELKAQHYPDSA 160

Query: 629 SAELK---------SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
             E K          IE   N +I +NLP+      +E+ + +  +        +     
Sbjct: 161 FVEFKGFIDGKHKADIEAAANALIDENLPIKVCYWTQEELVRACWSVPETLVLPEGELAR 220

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI 705
           +V+ E  G ++   CGGTH+++TGE+
Sbjct: 221 AVDIEGAGAYA---CGGTHMATTGEV 243


>gi|325970470|ref|YP_004246661.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta sp. Buddy]
 gi|324025708|gb|ADY12467.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta sp. Buddy]
          Length = 394

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D T  Y E GGQ GD G   G    + + +  K  +    HH      ++  ++ +V
Sbjct: 28  LVLDSTICYPEGGGQSGDIGTISG----VTLLNTTKDDDHTIYHHVAEHSFVVGAQVGIV 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVS-QNGSCITPDGLRFDVTHSKPITSAE 631
           L  D+ +R      H+A H+     S +L +H S Q  S    + +    T +  I  + 
Sbjct: 84  L--DWNHRYHYMQMHTAQHVA----SGLLFTHFSIQTVSVHQGERILTIETDAVAIEPSL 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              +ED VND++ QN PV   +  +  A   G    +  +  D VR+V VE  D     +
Sbjct: 138 CYQLEDLVNDVVRQNHPVHYEVHTQSSAQTLGLRRSIKVE-GDGVRLVVVEQVD-----T 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             CGG HV +T EI   +   +  IR  IR I
Sbjct: 192 VACGGLHVGNTSEIEFFHYAGQEKIRGHIRLI 223


>gi|297565180|ref|YP_003684152.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus silvanus DSM 9946]
 gi|296849629|gb|ADH62644.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus silvanus DSM 9946]
          Length = 398

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 92/228 (40%), Gaps = 35/228 (15%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-----------KAEGIFVH 556
           G K   V DQT FY  AGGQ  DTG    DG+R  + DV++           KA+G  VH
Sbjct: 24  GGKHYAVLDQTLFYPTAGGQANDTGTL--DGVR--VVDVREASFRGEGGVDGKAKGEVVH 79

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH---VSQNGSCIT 613
              V    L     +   +D+  R +    H+A H L  A     G     V+ +G   T
Sbjct: 80  ---VLEAPLPEGQEVQGELDWTRRYRHMQRHTAEHTLAQAFWRAAGWETLAVNMSGPVCT 136

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D        S     A ++  E   N  +  N PV T  +  ED+           K +
Sbjct: 137 ID-------FSGEPNPATIQQAEALANWAVYANTPVKTFWL--EDSEVGSYPLRRAPKVS 187

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            R+R+V +E  D        CGGTHV+ TGE   + IV     + G R
Sbjct: 188 GRIRIVEIEGWD-----MVACGGTHVARTGEAGPIKIVKYERYKGGTR 230


>gi|168209904|ref|ZP_02635529.1| DHHA1 domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170712001|gb|EDT24183.1| DHHA1 domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 400

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 178/404 (44%), Gaps = 42/404 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD    + DGI+  + DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDL--GLIDGIK--VLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCI 612
              E   L+   +L   +D++ R      H   HLL      + G+     H+ +  S +
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              G          +    ++  E   N +I +NL V +   ++++         L  K 
Sbjct: 127 DIVGF---------LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRAL-PKT 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +     G+  +A C G H  +T ++ ++ I      +    RIE + G RA 
Sbjct: 177 DEEIRIVEI----VGLDLNACC-GVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAGNRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------ 786
           S    +DE L  +   LK  +G+ +  V+ + E  +   ++   RK++  + D       
Sbjct: 231 SDFFTKDEILGEICKLLKSGEGDTLNAVKNLLENNK--NIVDENRKVKAEIGDYKIKEML 288

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +I  +  ++ I    D+K +  + + + ++ ++  I+L  +    + +++   ++D
Sbjct: 289 NKSERIGSITLVNEIFDGEDTKHIGKLANKITEEYEA--IVLFAVKNGDRVNLIFNSSKD 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + N  D+ + +  ++ G GGG +   AQ GG N    + AI
Sbjct: 347 -MKKVNMSDILKDTITLIDGRGGGNQ-FAAQGGGKNNGNTEVAI 388


>gi|20807415|ref|NP_622586.1| metal-dependent hydrolase [Thermoanaerobacter tengcongensis MB4]
 gi|20515937|gb|AAM24190.1| predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Thermoanaerobacter
           tengcongensis MB4]
          Length = 418

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 122/283 (43%), Gaps = 36/283 (12%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E   G+K  VV D+T FY E GGQ  DTG     G +  I   +KK E   V+H + +  
Sbjct: 41  EEKDGEKT-VVLDRTYFYPEGGGQPSDTGKI---GSKSVIKAYEKKGE---VYHVVED-- 91

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLR 618
                  +   ID+  R      H+  HLL   L    G+      + +N S IT     
Sbjct: 92  -FPEGERVHCVIDWDRRFDHMQQHTGQHLLSSVLLKKYGADTESFSIGENSSHITVTKEF 150

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           F        T  E+  +E  VN +I +NL V +   +  + + S        +  + +R+
Sbjct: 151 F--------TEEEIHEVEKEVNGLIYKNLAVKSYFAD--EKLISKLPLRKKPQVKENIRI 200

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +E    G+  S  CGGTHV +TGEI +L I        G  R+E + G RA      +
Sbjct: 201 VEIE----GIDYSP-CGGTHVKNTGEIGILKIKKWERTNKGA-RLEFVCGFRALEDYQKK 254

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           +  +  L   L   +  +   ++++ E+YR+     AKR++  
Sbjct: 255 NSLVNFLIQVLSEKEEGIAEHLQKLLEDYRE-----AKREVNF 292


>gi|152002523|dbj|BAF73547.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 85

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 7  IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
          IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G +KP ++ +T VQK
Sbjct: 6  IRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRITNVQK 65

Query: 67 CV 68
          C+
Sbjct: 66 CI 67


>gi|291442032|ref|ZP_06581422.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291344927|gb|EFE71883.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 324

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 4/122 (3%)

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE+  +  + ++LPV  R M   +A   GA AL    Y ++VRVV +    GG  S  LC
Sbjct: 57  IEEAADQALRRDLPVGVRWMTLPEAKELGALALFDETYGEKVRVVEI----GGAWSRELC 112

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV    +I  + + SESS+ AG+ R+EA  G     +L  + + +  +A  L+  + 
Sbjct: 113 GGTHVEHASQIGTVVLTSESSVGAGMCRLEAAVGIEGFGYLARERDPVTRIAEQLQAPRA 172

Query: 755 NV 756
            +
Sbjct: 173 EL 174


>gi|149202516|ref|ZP_01879488.1| hypothetical protein RTM1035_07864 [Roseovarius sp. TM1035]
 gi|149143798|gb|EDM31832.1| hypothetical protein RTM1035_07864 [Roseovarius sp. TM1035]
          Length = 239

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 94/202 (46%), Gaps = 23/202 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSL 571
           +V DQT FY   GGQ GD+G  +  G  L I     KAEG  +   + E   L     +L
Sbjct: 28  IVLDQTLFYPMGGGQPGDSGRLMCQGRSLPIA-TAVKAEGEQIALVMAEPMALPPIGTAL 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R +L   H+A HL    LS ++   VS      T   L FD+    P    +
Sbjct: 87  RQAIDWPRRHRLMRMHTALHL----LSVVIPLPVSGGAVAETRSRLDFDM----PEAPED 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--------GAAALLGTKYNDRVRVVSVEY 683
            +++ED +N ++ Q+LPV    +  +DA+ +          A  +G+    RVR+V +  
Sbjct: 139 RETLEDYLNQLVDQDLPVTEEWIT-DDALRANPGLVKTMSVAPPMGS---GRVRLVRIGQ 194

Query: 684 EDGGVHSSALCGGTHVSSTGEI 705
               V     CGGTHV+ TGEI
Sbjct: 195 GTDQVDLQP-CGGTHVARTGEI 215


>gi|153854643|ref|ZP_01995893.1| hypothetical protein DORLON_01888 [Dorea longicatena DSM 13814]
 gi|149752747|gb|EDM62678.1| hypothetical protein DORLON_01888 [Dorea longicatena DSM 13814]
          Length = 384

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 56/396 (14%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIV 560
           EEA  G +V  V DQT F+ E GGQ  DTG  +G    + +TDV +K + I+ H+  A +
Sbjct: 23  EEAKDGYRV--VLDQTVFFPEGGGQYADTG-VLG---TVNVTDVHEKDDVIY-HYTTAPL 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQNGSCITPD 615
           E G + T       I+++ R +    H+  H    ++H       +G H+  +   +  D
Sbjct: 76  EVGSIVTG-----KINWEERFEKMQQHTGEHIVSGIVHERFGYNNVGFHLGADYCTMDFD 130

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G          I+  +LK IE   N+ + Q+L +     ++++       + +  +   +
Sbjct: 131 G---------TISKEQLKEIEAAANEAVYQDLEIEILYPSKDELKDMDYRSKI--EIEGQ 179

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR+V +   D        C   HV +TGEI  + +VS ++ + G  RI  + G+RA    
Sbjct: 180 VRIVKIPGYD-----VCACCAPHVKTTGEIGAVKLVSMANYKGG-ERITMLCGRRAMRDY 233

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIAD 793
             +D   K +++ L   +  V   V ++ +E  ++  Q+   ++KL          ++A+
Sbjct: 234 EKKDAMTKEISALLCAKEYEVADAVGKLKDEQTRMKSQIAELQQKLLE-------FRVAE 286

Query: 794 VNFMSHIISEVDS----KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           +     I++  DS       + +M+ L  K      +  G   +    V+   +ED+   
Sbjct: 287 IPVEEKIVTVFDSALSGNLPREMMNRLLDKGAVICAVFAGTDTDGYRYVIGSRSEDVRPI 346

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             A+++A         G GGG+P M Q       KA
Sbjct: 347 SKALNVAF-------EGRGGGKPEMVQGSVKGTGKA 375


>gi|18976557|ref|NP_577914.1| partial alanyl-tRNA synthetase matches COOH terminus half
           [Pyrococcus furiosus DSM 3638]
 gi|18892116|gb|AAL80309.1| partial alanyl-tRNA synthetase matches COOH terminus half
           [Pyrococcus furiosus DSM 3638]
          Length = 404

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 12/234 (5%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            +IV+    G  V+V  D+T FY E GGQ GD G   G+G  + + +  +K   IF    
Sbjct: 16  AKIVDLKFEGDNVKVELDRTIFYPEGGGQPGDKGVIKGEGFEIIVENTIEKEGRIFHIGK 75

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           ++ +   + + S+ L +D+  R      +   H   H LS +L    + + +  T  G  
Sbjct: 76  LIGKTPNKGD-SVELELDWDWR----YGNMQIHTGQHILSAVLKKMYNLDTTGFTIFGEY 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAAALLGTKYNDRVR 677
             +  +  IT   ++  E   N II  +LPV+    +   + +AS     +  K   ++R
Sbjct: 131 AKIEVNGEITWDIIERAELEANKIIISDLPVIIEEYHELPEELASELRKSVA-KVKGKIR 189

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +V +    G V  +  CGGTHV ST E+ ++ ++        + RIE   G RA
Sbjct: 190 IVKI----GDVDITP-CGGTHVRSTKEVGIIKVLRFYKKSRDLWRIEFTCGFRA 238


>gi|328471106|gb|EGF42011.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 74

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 1  MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
          M  +SS  IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1  MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59 QAVTTVQKCVR 69
            +T  QK +R
Sbjct: 61 PRITNAQKSIR 71


>gi|229917979|ref|YP_002886625.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sp. AT1b]
 gi|229469408|gb|ACQ71180.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sp. AT1b]
          Length = 386

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 31/254 (12%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            + +PFYAE GGQ  D G  IG    L + DVQ K   ++  H + E   L T  ++ + 
Sbjct: 24  LENSPFYAEGGGQPADRGW-IGT---LPVLDVQIKDGEVW--HLLSES--LPTGKAVEVR 75

Query: 575 IDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           ID   RR  SI H+A H++       H + T L   + +  S I  +    D  H     
Sbjct: 76  IDEDVRRDHSIQHTAQHVITAILEDRHGIRT-LSFGIGETDSSIEIETATMDWAH----- 129

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
              ++++E  +  +I +N P+    + +E+     A     T     +R+V +E    G+
Sbjct: 130 ---VEALEQEMQQLIFENRPIRVYEIPKEEV--DRARLRKETDRTGMIRIVEIE----GL 180

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             +A CGGTHV +TG++  +++ +   +R  + R+  + G RA          L+++   
Sbjct: 181 DYNA-CGGTHVETTGQLGTIHVTAMKKVRGNL-RLTYVAGNRAIKATQQARAALRTIHHT 238

Query: 749 LKVSQGNVVGRVEE 762
              +  +V  RV E
Sbjct: 239 FSTTNESVAARVIE 252


>gi|239617886|ref|YP_002941208.1| Threonyl/alanyl tRNA synthetase SAD [Kosmotoga olearia TBF 19.5.1]
 gi|239506717|gb|ACR80204.1| Threonyl/alanyl tRNA synthetase SAD [Kosmotoga olearia TBF 19.5.1]
          Length = 377

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 22/262 (8%)

Query: 513 VVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           + F++   Y +  GGQLGD G   G+ I LQ+    K+ +G +    I ++    T   +
Sbjct: 17  LCFEKGTLYVDGEGGQLGDRGKIDGNKI-LQV----KRVDG-YPCAVIEKKNNYSTGEFV 70

Query: 572 VLTIDYQNRRQLSINHSATHLLHH-ALSTILGSHVS-QNGSCITPDGLRFDVTHSKPITS 629
            L +D + R  ++  H+A HLL   AL  +    V  Q G   +   L   +   K    
Sbjct: 71  ELELDLERRVDIAQQHTAQHLLSAVALRELDAETVGFQMGEEFSTIDLTIGLLEDKM--- 127

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDG 686
              + +ED  ND I + LPV  + ++  +         +  K     +++R+V +E    
Sbjct: 128 --KRLLEDVSNDCILKLLPVTVKEVDPSEIFRYNLRKSVSDKILEKAEKIRLVKIE---- 181

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G+  S  CGG HV +TGE+ LL I+    ++  + R+  + G+RA      +   L SL 
Sbjct: 182 GIDVSP-CGGFHVKNTGEVGLLKILKVEKVKGNLTRVYFVAGKRAIRVFQNEHSILGSLG 240

Query: 747 SFLKVSQGNVVGRVEEIWEEYR 768
             L      +V R + I E+ +
Sbjct: 241 KLLTCGYHELVSRTQSILEDLK 262


>gi|217968140|ref|YP_002353646.1| Threonyl/alanyl tRNA synthetase SAD [Dictyoglomus turgidum DSM
           6724]
 gi|217337239|gb|ACK43032.1| Threonyl/alanyl tRNA synthetase SAD [Dictyoglomus turgidum DSM
           6724]
          Length = 383

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 27/242 (11%)

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FY E GGQ  D G  +G+  +L+++ V +K   I+    I      +    + L I
Sbjct: 35  DETIFYPEGGGQPSDRGEIVGEAWKLEVSKVFEKDGVIWHKGKIFGENFPKIGEIVDLFI 94

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +   RR+    H+A HLL   L       +   G  +  D  + ++ +        +K +
Sbjct: 95  NIDLRREYMEQHTAQHLLSAILEK--DYSLETTGFQVFEDHTKIEIPYKGLDPEGFIKEV 152

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ I +N+ +                       ++  R+V +     G+  +  CG
Sbjct: 153 EGKVNEYIGRNISISIYWK------------------DESTRIVEIP----GLDVNP-CG 189

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV S GE+ LL I+          R+E + G+R    L  ++++ K +    K+   N
Sbjct: 190 GLHVKSLGELKLLKILDFYKKNNLYWRVEFVAGRRIIKQLEKREKEYKIIKE--KLGNPN 247

Query: 756 VV 757
           +V
Sbjct: 248 IV 249


>gi|326319125|ref|YP_004236797.1| threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375961|gb|ADX48230.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 255

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 24/224 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQ--KKAEG------IFVHHAIVERG 563
           +V D+T FY   GGQ GD G  +  G R + I D +  K AEG      + V     E  
Sbjct: 37  IVLDRTVFYPLGGGQAGDAGVLVRAGGREVPIADTRKAKDAEGKPTAAIVHVPAPGAEPP 96

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  E++    ID++ R +L   H+ THLL H ++  +      NG  +TPD  R D   
Sbjct: 97  AVGEEVT--ARIDWERRHRLMRFHTTTHLLCHLVAQPV------NGCSVTPDAARLDFHM 148

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVV 679
             P+ +A L +    +  ++A+  PV    +   +  A      + ++   + + +VR V
Sbjct: 149 DGPLDAAALNA---GIARLVAEAHPVTIGAITDAELDAQPDLVKSMSVQPPRGSGQVRTV 205

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V  +         CGGTHV++T EI  + +       A  RR+
Sbjct: 206 RVGTDGQPRIDLQPCGGTHVANTAEIGAVVVTKIEKKGAMARRV 249


>gi|242034369|ref|XP_002464579.1| hypothetical protein SORBIDRAFT_01g021216 [Sorghum bicolor]
 gi|242074962|ref|XP_002447417.1| hypothetical protein SORBIDRAFT_06g000746 [Sorghum bicolor]
 gi|242087319|ref|XP_002439492.1| hypothetical protein SORBIDRAFT_09g008037 [Sorghum bicolor]
 gi|241918433|gb|EER91577.1| hypothetical protein SORBIDRAFT_01g021216 [Sorghum bicolor]
 gi|241938600|gb|EES11745.1| hypothetical protein SORBIDRAFT_06g000746 [Sorghum bicolor]
 gi|241944777|gb|EES17922.1| hypothetical protein SORBIDRAFT_09g008037 [Sorghum bicolor]
          Length = 97

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 11/85 (12%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEG----NNI-- 269
           LP   +DTGMG ER+ ++LQ K +NYD D+F  +  A  Q+ G     Y G    ++I  
Sbjct: 12  LPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPYSGKVGSDDIGK 71

Query: 270 --VNHRVIVDHLRSSSFLIADGILP 292
             + +RV+ DH+R+ SF IADG  P
Sbjct: 72  VDMAYRVVADHIRTLSFAIADGAQP 96


>gi|291546607|emb|CBL19715.1| Alanyl-tRNA synthetase [Ruminococcus sp. SR1/5]
          Length = 383

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 158/379 (41%), Gaps = 59/379 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ D++ FY E GGQ  DTG  + D   +++ +V +K EG  +H+       +     + 
Sbjct: 33  IILDESAFYPEGGGQPSDTG-YLND---VKVKEVHEK-EGELLHYT---DQPMEVGTEVQ 84

Query: 573 LTIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ID+  R  L   HS  H    L+H A     +G H+  +   I  +G         P+
Sbjct: 85  GRIDWARRFDLMQQHSGEHMVSGLIHEAYGYDNVGFHMGSDTITIDLNG---------PL 135

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVSV 681
             A+L  IE   N  I ++  +          I   A  L    Y  +      VR+V  
Sbjct: 136 DEAQLAEIERKTNQKIWEDTQI--------KIIYPTAEELEKIDYRSKKELTGQVRIV-- 185

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             E  GV   A CG THV+ TGEI ++ ++S    R G+ RIE I G+R   +L   +++
Sbjct: 186 --EFPGVDICACCG-THVTHTGEIGMVKLLSVEKFREGV-RIEMICGKRVLDYLNMVNDQ 241

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-- 799
              ++  L          VE + EE  +L     K ++   V+D+ C K A+    S   
Sbjct: 242 NHQISVKLSAKMDKTAQAVERLQEENFRL-----KGQVGQLVDDM-CRKEAERYAGSGSV 295

Query: 800 --IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              +  +D+  ++ + DA+ +  Q    +  G +       +     DL  +F     A+
Sbjct: 296 LIFMDGMDADSVRKLADAVTQTCQGCCAVFSGNADGSYKYAMGEKDGDLR-QFTKEMNAK 354

Query: 858 LSAKVLGGGGGGGRPHMAQ 876
           L+      G GGG+P   Q
Sbjct: 355 LN------GRGGGKPFFVQ 367


>gi|322371755|ref|ZP_08046298.1| Alanyl-tRNA synthetase, class IIc-like protein [Haladaptatus
           paucihalophilus DX253]
 gi|320548640|gb|EFW90311.1| Alanyl-tRNA synthetase, class IIc-like protein [Haladaptatus
           paucihalophilus DX253]
          Length = 240

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 92/199 (46%), Gaps = 20/199 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FY E GGQ  DTG    +     +TDVQKK     ++H +   G L  E + V
Sbjct: 33  VVLDRTLFYPEGGGQPFDTGVLESEDETWAVTDVQKKDT---IYHTL--DGTLPEEGTTV 87

Query: 573 L-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSA 630
              ID++ R      H+A HLL    + +L  + +Q  G+ +  D  R D  + +  T  
Sbjct: 88  TGRIDWERRYAHMRYHTAQHLLS---AVLLEEYDAQTTGNQLYEDRARIDCGYER-FTDE 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDG 686
           E   IE  +ND I   L V    M+R++A AS         L  +   R+R+V +E  D 
Sbjct: 144 EFARIESVMNDRIDAGLAVNWYEMDRDEAEASLDPERTRIHLLPESIRRIRIVEIEGTD- 202

Query: 687 GVHSSALCGGTHVSSTGEI 705
                  C GTHV  T E+
Sbjct: 203 ----RTACAGTHVERTDEL 217


>gi|302874189|ref|YP_003842822.1| Alanyl-tRNA synthetase, class IIc-like [Clostridium cellulovorans
           743B]
 gi|307689551|ref|ZP_07631997.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           cellulovorans 743B]
 gi|302577046|gb|ADL51058.1| Alanyl-tRNA synthetase, class IIc-like [Clostridium cellulovorans
           743B]
          Length = 401

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 160/392 (40%), Gaps = 36/392 (9%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+       +  V  D+T FY E GGQ  DTG      +     D     +GI  H  
Sbjct: 16  AEIINILEKDNEFHVELDKTYFYPEGGGQPSDTGFIETSKVTYVYED-----QGIIYH-- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V             ++D+ NRR    +H   HL  H LS       + N          
Sbjct: 69  -VVDKKPIKLKKTKCSLDW-NRR---FDHMQQHLGQHILSAAFLELFNVNTIAFHLGSEN 123

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             +   KP+T AE++  E   N  I +N+ V     ++ +         +  K ND +R+
Sbjct: 124 CTIDLDKPLTDAEIREAESLANKTILENINVEFLFPSKAELKKFHIKKTI-PKTNDAIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +  +D  ++    C G H +ST E+ ++ I      + GI R+E + G R        
Sbjct: 183 VKI--DDFDINP---CCGLHPNSTLEVQIIKIKKYEKHKTGI-RLEFLCGNRGIKDSFII 236

Query: 739 DEKLKSLASFLKVSQGNVV-------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           ++ +  L   LK +    +         ++ +  E ++L+ I A  +++  +++    K+
Sbjct: 237 EDFVTKLCRTLKCNHEEALENITKQSTNIKNLLAENKELKSIIADYEVKTMIDN--GEKV 294

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR 849
            D+  +  I    D+ + K V + L  K+ +   +++L  +     A +L + + ++L+ 
Sbjct: 295 KDITIIKTI---HDTDDFKYV-NLLASKLTTFDNVVVLFAVKTSDMAKLLFMCSRNILN- 349

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            N   L +  A  L  G GGG    AQ GG N
Sbjct: 350 LNMGTLLK-DAITLIDGNGGGSNISAQGGGKN 380


>gi|121607368|ref|YP_995175.1| threonyl/alanyl tRNA synthetase, SAD [Verminephrobacter eiseniae
           EF01-2]
 gi|121552008|gb|ABM56157.1| Ala-tRNA(Pro) hydrolase [Verminephrobacter eiseniae EF01-2]
          Length = 252

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 104/238 (43%), Gaps = 46/238 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQ--KKAEGIFVHHAIV--------- 560
           +V D+T FY + GGQ GD+G  +  DG  + I D +  K A+G    HA           
Sbjct: 28  IVLDRTVFYPQGGGQAGDSGLLLRADGSSITIADTRKGKDAQG----HATADIVHIPAPG 83

Query: 561 --ERGILRTEMSLVLT-IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +R    T  + V   I ++ R ++   H+ THLL H +  ++      NG  ITPD  
Sbjct: 84  QQDRMAQWTPGTAVTARIAWERRHRMMRLHTTTHLLCHLVPHLV------NGCSITPDYA 137

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------K 671
           R D   + P+    L +    +  ++A   P+   + +  DA      AL+ +      +
Sbjct: 138 RLDFAITDPLDKQALNT---GIAALVAAAHPLT--VASISDAELDANPALVKSMSVQPPR 192

Query: 672 YNDRVRVVSVEYEDGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              R+R + +    GG  +SA       CGGTHV++T EI  + +       A  RR+
Sbjct: 193 GTGRIRTIRI----GGQSASAALIDLQPCGGTHVANTAEIGAIVVTKIEKKSATTRRV 246


>gi|194290242|ref|YP_002006149.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193224077|emb|CAQ70086.1| putative ALANYL-TRNA SYNTHETASE [Cupriavidus taiwanensis LMG 19424]
          Length = 237

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 27/210 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           A S + +E+  D+T  YA +GGQ GDT   A+ DG  + I D     +   + H      
Sbjct: 23  AASAEGIEL--DETVCYARSGGQAGDTATLALADGRTVAIDDTVYADDRTRILHVPAAGA 80

Query: 564 IL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L R    + + ID+  R +L   H+  HLL   +       V   G  I+PD  R D  
Sbjct: 81  PLPRVGERVTVAIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDAARIDF- 133

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDR 675
              P ++ +   + + +N +I  N  V T ++  ++  A        GAA   GT     
Sbjct: 134 -DLPESTLDKADLTERLNALIRANTAVRTTLITPQELAAQPDLVRTIGAAPPAGTA---S 189

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +R++ +     GV     CGGTHV++TGEI
Sbjct: 190 IRIIEIP----GVDRQP-CGGTHVANTGEI 214


>gi|48477442|ref|YP_023148.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430090|gb|AAT42955.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 249

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 14/218 (6%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T FY   GGQ  DTG  + D  + Q+ DV K  + I   H I      R +  L
Sbjct: 37  EVILDRTCFYPTGGGQPNDTGLLLKDDKKYQVIDVYKNNDDII--HKISGDVPGRGD-KL 93

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R  L   H+A H++   +      H    G  +  D  R D      I    
Sbjct: 94  HGIIDWDRRYSLMRYHTAVHIIDGVVKNYYNDHGMLTGGQLYTDHARVDFDFDD-INREL 152

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDG 686
           +++I +  N+II + L V  + + R++A+A    A            D VRV+ +E  D 
Sbjct: 153 IETIINQSNEIIEKGLNVFEKTLTRDEALAIPDLARTEPGRRLIESLDYVRVIEIEGFD- 211

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            + S    GGTHV +T E+  + I    +   G +R+E
Sbjct: 212 -MQSD---GGTHVKNTSEVGKIIIKKIENKGRGHKRLE 245


>gi|145332595|ref|NP_001078163.1| ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA
           and related compounds / nucleic acid binding /
           nucleotide binding [Arabidopsis thaliana]
          Length = 256

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 28/230 (12%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIV-----ER 562
           ++ ++ + T F+ + GGQ  DTG  +  G  ++  + DV+ K +GI +H+ +      E 
Sbjct: 33  RIALILESTVFHPQGGGQPSDTGLIVFSGSDLKFSVQDVRSK-DGIVLHYGVFEGSNPES 91

Query: 563 GILRTE-MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           GI   +   + LT+D   R+  S  HSA HLL   +  +   H+        PDG   + 
Sbjct: 92  GIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLDMCMQKVGLGHLEPGKGYHFPDGPFVEY 151

Query: 622 THSKPITSAELKS--IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--- 676
             S P    ++K   +E   N++I++   V   I+  E+     A+ L G    D +   
Sbjct: 152 KGSVPQEEFQVKQKELEAEANELISKGGKVYAAILPYEE-----ASVLCGGSLPDYISKG 206

Query: 677 ---RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              R++ +     G      CGGTHVS+  +I+ + I ++   + G+ ++
Sbjct: 207 STPRIIKL-----GDSPGCPCGGTHVSNLSDIISMKI-TQMRTKKGMTKV 250


>gi|331091305|ref|ZP_08340145.1| hypothetical protein HMPREF9477_00788 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404466|gb|EGG84010.1| hypothetical protein HMPREF9477_00788 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 387

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 169/377 (44%), Gaps = 52/377 (13%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +VV ++T F++E GGQ  DTG    DG+R  + DVQ+K +GI  H  + E+  L    ++
Sbjct: 30  KVVLNRTAFFSEGGGQSADTGTL--DGVR--VFDVQEK-DGILYH--MTEKP-LEQGKTV 81

Query: 572 VLTIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ID++ R      HS  H    L+H       +G H+ Q+   +  DG+         
Sbjct: 82  TGKIDWEERFSKMQQHSGEHIVSGLIHRKYGYNNVGFHLGQDTVTMDFDGV--------- 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  +L+ IE   N  + +NL +      +E+       + +  +   ++R+V++   DG
Sbjct: 133 LTKEQLREIELLANGAVVKNLDIQVDYPTKEELHTIEYRSKI--EIEGQIRIVTI---DG 187

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             +    C   HV  TGEI L+ + +  + + G+R I  + G RA +    ++  ++ ++
Sbjct: 188 --YDVCACCAPHVKKTGEIGLIKLTNVQNYKGGVR-ITMLCGFRALADYNEKEASVRKVS 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             +   +  +   VE++ EE  K QL   K ++ L  + L   K + +      +   DS
Sbjct: 245 VLMSAKENEIDEAVEQLKEE--KAQL---KNEIALLQDKLLRSKASRIEPGQETVCLFDS 299

Query: 807 -------KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
                  +EL +++  L+K ++   I  V    + +    +V +  +  R  A  L    
Sbjct: 300 ELSGNAPRELVNLL--LEKDVK---ICGVFFGNDSEGYRYVVGSRSVDTRPIAKSLNETF 354

Query: 860 AKVLGGGGGGGRPHMAQ 876
           +     G GGG+P M Q
Sbjct: 355 S-----GRGGGKPEMVQ 366


>gi|296127837|ref|YP_003635089.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296019653|gb|ADG72890.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 643

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 20/154 (12%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           ++ L+LT    N     + HS +HL+  A+  +  +     G  I  DG  +D    KP 
Sbjct: 55  DLELILTT--TNEGLEVLRHSTSHLMAQAVRRLYPNTQVTIGPAIK-DGFYYDFDAEKPF 111

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----- 682
           T  +L  IED +  II +N+PVV ++MN+ +AI     A      N+  +V  +E     
Sbjct: 112 TEEDLPKIEDEMKKIIKENIPVVRKVMNKNEAIEYFKKA------NEPYKVEIIEGIDAD 165

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               YE G      LC G HV STG I    ++S
Sbjct: 166 TVSFYEQGDFID--LCRGPHVPSTGYIKSYKLMS 197


>gi|260174420|ref|ZP_05760832.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315922688|ref|ZP_07918928.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313696563|gb|EFS33398.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 158

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N   I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIED VN++I+QNLPV    M  E A      + L    ++ +R+V +     G 
Sbjct: 60  AEQIQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+ +  I+S
Sbjct: 115 YDACACIGLHVSNTSEVDIFKIIS 138


>gi|253584156|ref|ZP_04861354.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834728|gb|EES63291.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 374

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 35/261 (13%)

Query: 519 PFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           PFY +  GGQLGD G  +G+   L++ D             I ++ +   E     TID 
Sbjct: 25  PFYIDGKGGQLGDRG-TLGESNVLEVKD----------GSIITDKEVPLGEQEY--TIDM 71

Query: 578 QNRRQLSINHSATHLLH------HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + R+ ++  H+A HL        + L+T+ G  +++  + +  D        S  I+   
Sbjct: 72  ERRKDIACQHTAQHLFSALAYNDYQLNTV-GFRMAEEYTTVDLD--------SNTISEET 122

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +  +E+  N+II + + +    +N E+A+   G    +  K    VR V +   D G   
Sbjct: 123 ITELENKANEIIRKAIELKIYTLNHEEALKIEGLRKAIKDKVTGDVRFVEIPEIDLGA-- 180

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C G HV +T +I L  I+S   I+    R   I G RA      + E  K L     
Sbjct: 181 ---CAGFHVENTKDIKLFKILSHEKIKGNYTRFFFIAGDRAIKDYAFKHELSKELCHIFS 237

Query: 751 VSQGNVVGRVEEIWEEYRKLQ 771
                ++  + +  EE +K +
Sbjct: 238 CKDYEILTMLNKSLEEKKKTE 258


>gi|73542031|ref|YP_296551.1| Ala-tRNA(Pro) hydrolase [Ralstonia eutropha JMP134]
 gi|72119444|gb|AAZ61707.1| Ala-tRNA(Pro) hydrolase [Ralstonia eutropha JMP134]
          Length = 237

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 27/210 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           AVS   +E+  D+T  YA +GGQ GDT    + DG  + ITD     +   + H   E  
Sbjct: 23  AVSDAGIEL--DETICYARSGGQAGDTATLTLEDGRTMSITDTVYADDRARILHVPAEGT 80

Query: 564 IL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L R    + +TID++ R +L   H+  HLL   +       V   G  I+PD  R D  
Sbjct: 81  ALPRVGERVTVTIDWERRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDSARIDF- 133

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDR 675
              P ++ +   + + +N +I  N  V   ++  ++  A        GAA   GT     
Sbjct: 134 -DLPESTLDKAVLTEQLNALIRANTAVRVTLITPQELAAQPELVRTIGAAPPAGTS---S 189

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +R++ +     GV     CGGTHV++T EI
Sbjct: 190 IRIIEIP----GVDRQP-CGGTHVANTSEI 214


>gi|294868394|ref|XP_002765516.1| Alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239865559|gb|EEQ98233.1| Alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 436

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 29/257 (11%)

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +VLC   P  L +  + ++       + V     G K  V  DQT  Y E GGQ  DTG 
Sbjct: 4   RVLCIAQP-KLRSATAKVLTCEAAPKKAVAPMAKGSKFVVTLDQTLLYPEGGGQPSDTG- 61

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            IG+    ++  V K +EG  VHH +  +  + +E++  +T+D+  R   +  HS  HL+
Sbjct: 62  RIGNA---KVLYVNKNSEG-EVHHYVDSKVEVGSEVA--VTLDWDRRWDNTQQHSGQHLI 115

Query: 594 -----HHALSTILGSHVSQ---NGSCITPDG-LRFDVTHSKPITSAELKSIEDNVNDIIA 644
                H  +    G   S    N SC    G    D+        + +K++E   N  I 
Sbjct: 116 SALCEHAEIFPEFGKTDSWEFGNESCSVDIGPCNLDLIPQGETLESRVKALEKACNQAIR 175

Query: 645 QNLPVVTRIMNREDAIASGA-------AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           ++  V  R M R +             +AL      D  R+V ++    G+  +A CGGT
Sbjct: 176 EHRTVFNRQMKRSELEDENGNRDPMLRSALPKKVKGDVFRIVEID----GIEKNA-CGGT 230

Query: 698 HVSSTGEIMLLYIVSES 714
           HV +  E+  + I+  S
Sbjct: 231 HVENLSELQCVKIIGHS 247


>gi|316932601|ref|YP_004107583.1| Threonyl/alanyl tRNA synthetase SAD [Rhodopseudomonas palustris
           DX-1]
 gi|315600315|gb|ADU42850.1| Threonyl/alanyl tRNA synthetase SAD [Rhodopseudomonas palustris
           DX-1]
          Length = 249

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 34/216 (15%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAI 559
           IV+++ +G    V  ++T FYAE+GGQ GD G  + D G  L + D Q     + + H +
Sbjct: 23  IVDQSDAG----VCLEKTIFYAESGGQPGDVGELVLDSGESLLVADAQYIPGRLRIAHVL 78

Query: 560 V---ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
               +R ++  ++  +  ID++ R +L   H++ HL    L +++ + V+  G  I PD 
Sbjct: 79  ATPPDRSLIGAKV--LARIDWERRYRLMRLHTSLHL----LCSLVDAPVT--GCAIYPDY 130

Query: 617 LRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT----- 670
            R D      I SA + +++ D +N ++  +LPV   I  R   + S   +L+ T     
Sbjct: 131 ARLDFD----IESALDRQTLTDRLNALVRNDLPV--EIECRSADVLSAEPSLVRTVQVAL 184

Query: 671 -KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +   ++R+VS+     G      CGGTHV STGEI
Sbjct: 185 PQTGKQLRLVSI-----GEVDRQPCGGTHVRSTGEI 215


>gi|168204578|ref|ZP_02630583.1| DHHA1 domain protein [Clostridium perfringens E str. JGS1987]
 gi|170663792|gb|EDT16475.1| DHHA1 domain protein [Clostridium perfringens E str. JGS1987]
          Length = 400

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 177/398 (44%), Gaps = 41/398 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD    + DGI+  + DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDL--GLIDGIK--VLDVYEE-EGKVYH- 68

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCI 612
            I+E+   + + +L   +D++ R      H   HLL      + G+     H+ +  S +
Sbjct: 69  -ILEKEPKKLK-NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCSFHLGKEISTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              G          +    ++  E   N +I +NL V +   ++++         L  K 
Sbjct: 127 DIVGF---------LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRAL-PKT 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +     G+  +A C G H  +T ++ ++ I      +    RIE + G RA 
Sbjct: 177 DEEIRIVEI----VGLDLNACC-GVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAGNRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------ 786
           S    +DE L  +   LK  +G+ +  V+ + E  +   L+   RK++  + D       
Sbjct: 231 SDFFTKDEILGEICKLLKSGEGDTLNAVKNLLENNK--NLVDENRKVKAEIGDYKIKEML 288

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +I  +  ++ I    D+K +  + + + ++ ++  I+L  +    + +++   ++D
Sbjct: 289 NKSERIGSITLVNEIFDGEDTKHIGKLANKITEEYEA--IVLFAVKNGDRVNLIFNSSKD 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            + + N  D+ + +  ++ G GGG +      G  NGN
Sbjct: 347 -MKKVNMSDILKDTITLIDGRGGGNQFAAQGRGKNNGN 383


>gi|254474545|ref|ZP_05087931.1| alanyl-transfer RNA synthetase domain protein [Ruegeria sp. R11]
 gi|214028788|gb|EEB69623.1| alanyl-transfer RNA synthetase domain protein [Ruegeria sp. R11]
          Length = 239

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 17/199 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V +Q+ FY   GGQ GDTG    DG  L I +  K   G  V     +  +     ++ 
Sbjct: 28  LVLNQSVFYPTGGGQPGDTGALSWDGGHLSIINTVKGEAGEIVLIPEPDAALPPVGAAVS 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            ++D+  R    + H   H   H LS +L   VS  G  I  +  R D   + P    + 
Sbjct: 88  QSLDWDRR----MGHMRIHTALHLLSVVLPLPVS--GGAIGAEKGRLDF--NMPEAPEDK 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYNDRVRVVSVEYEDG 686
           +++ED +N +IA++L V  R +   DA       L+ T      + + R+R+V +  +  
Sbjct: 140 QALEDALNALIARDLEVTERWIT--DAELDAQPDLVKTMSVSPPRGSGRIRLVRIGTQSD 197

Query: 687 GVHSSALCGGTHVSSTGEI 705
            +     CGGTHV+ TGEI
Sbjct: 198 QIDLQP-CGGTHVNRTGEI 215


>gi|330837250|ref|YP_004411891.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta coccoides DSM 17374]
 gi|329749153|gb|AEC02509.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta coccoides DSM 17374]
          Length = 424

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 169/415 (40%), Gaps = 66/415 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +V D T FY E GGQ GD G         GD + +Q+           +H       IL 
Sbjct: 41  LVLDCTIFYPEGGGQPGDRGIIRKRGIDKGDSLTVQVVATITDEASRILH-------ILD 93

Query: 567 TEMSLV------LTIDYQNRRQLSINHSATHL---LHHALSTILGSHVSQNGSCITPDGL 617
            E SLV      L +D+ +R      H+A H+   L H L  I    V Q    +T +  
Sbjct: 94  KETSLVPGDDVTLELDWGHRYAYMQMHTAQHMISGLAHTLFGIGTLSVHQGAEGLTIETD 153

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R D+     I       +E+ V   I +++PV++R ++  +A   G    +  K    VR
Sbjct: 154 RSDIPMETIII------LEEAVTCAIHRDIPVISREVSHAEATRLGLRRSI--KVEGDVR 205

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRA 731
           +VS+E    G+   A CGG HV+ TGE+  +      S+R+ + R++ +TG      +R 
Sbjct: 206 IVSIE----GIDLMA-CGGVHVARTGEVRAVRYAGSESVRSHV-RMKWLTGDSVLETERQ 259

Query: 732 RSHLMGQ--------DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
              ++G+         E + S  + L+VS      + E+  EE   L L+ AK     + 
Sbjct: 260 ARAIIGELTTVLSAPPEDIVSSVTALQVSAMQSRHQAEQAMEEAAFLHLL-AKAASTPDT 318

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +     DV   S +       ELK V  A+      G I+L    + +  +   +  
Sbjct: 319 YGGTPVVTWDVPAASFM-------ELKHVAAAIPA---CGSIILCATRETEGKTAWCIAL 368

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +D    F  +   R    +  G  GGG+  + Q   P    A + I    +F+KK
Sbjct: 369 KDAACNFETI---RTEVLLPLGAKGGGKSPLWQGIAP--VPAVRLIEDFLNFMKK 418


>gi|227824520|ref|ZP_03989352.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905019|gb|EEH90937.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 402

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 37/385 (9%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G   E+V D T  + E GGQL D G    D I +            F H A      L  
Sbjct: 26  GDHFEIVLDGTVIFPEGGGQLSDQGWI--DDIPVYYAAESGDDVRHFTHKA------LPV 77

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + + +D+  R      H   H+L +A     G+  +  G  +  + +  D+   K +
Sbjct: 78  GEKVTVRLDWDVRLDRMQQHCGEHMLSYAFWKTCGA--NNVGFHMNEESVFIDL--DKEV 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR--VVSVEYED 685
               +K  E + N  + +N P+    +   +    G       K ND++R  V  V+ ++
Sbjct: 134 DEKTVKEAELSANAAVWENHPITLHYVPYTELGKYGL-----RKKNDKLRGIVRLVDIKE 188

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G    +  C GTH   TG + L+ ++  +  + G  RIE + G+RA   +  +   L+  
Sbjct: 189 G---DTCTCCGTHPPFTGMVGLIKVIRFNRYKGG-SRIEFLCGKRAVEAIHERSRILEET 244

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHI 800
           ++ L V    V+  VE++ +E   L+    +R   L   +L         +A       +
Sbjct: 245 SNLLSVKSEEVLPAVEKLHQEVLDLKASLRERTQDLFQAELPALLEKAPLLASGTRFVFV 304

Query: 801 ISEVDSKELKSVMDAL--QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           ++E   ++ KS+M  L  ++KI + +I+  G     K       T+   +R    DL  +
Sbjct: 305 LTEGTPRDGKSLMKLLTGKEKILAALILKNG----DKVMYQFAATKGAEERCR--DLCTM 358

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGN 883
           +  V  G GGG  P  +Q GG  G+
Sbjct: 359 AGNVFHGRGGGS-PTSSQGGGIAGS 382


>gi|226312694|ref|YP_002772588.1| truncated alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226095642|dbj|BAH44084.1| truncated alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 403

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 157/379 (41%), Gaps = 41/379 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV +QT FY   GGQ  D G  + + IR  + DV++  +G   H   +E  +  +   + 
Sbjct: 32  VVLNQTAFYPTGGGQPSDLG--VLEEIR--VVDVEE-VDGEIRHR--LEAPLSESIGEVT 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ---NGSCITPDGLRFDVTHSKPITS 629
             ID+  R      H+  H+L  +   ++ +           IT D +R D      +T+
Sbjct: 85  GYIDWDRRFDHMQQHAGQHILSASFLEVVQAETVAFHLGKERITID-VRLD-----ELTT 138

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVVSVEYED 685
              + +E   N I+ +N P++ R ++ E+       A L  K      + +RVV +   D
Sbjct: 139 EVWEKVEKRANQIVLENHPILARFVDDEEL------ATLPLKKQPTVTENIRVVMIPEFD 192

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTH + TGE+ ++ I+     R  I R+E I G RA      +   ++  
Sbjct: 193 YNP-----CGGTHPARTGEVGMIKILGWERHRGNI-RLEFICGWRALRDYNQKQAVVRDT 246

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHI 800
           A  L  ++G ++ + E +  E   L+   A+   QL     N +  +  ++     +   
Sbjct: 247 AKLLATNEGELIAQTERLLAERDTLKAKLAEVDKQLLEVEVNQQLATASQLGQSRLIMCT 306

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            S+  + +       L   +    I L+  + E K  ++    +D+    N V    L  
Sbjct: 307 FSD-KTIQQLQQFAQLATALAPDAICLLAATTEDKMQIVFGRGQDVNVAINQVLKETLP- 364

Query: 861 KVLGGGGGGGRPHMAQSGG 879
             +  G GGG P MAQ GG
Sbjct: 365 --IINGKGGGNPAMAQGGG 381


>gi|149914839|ref|ZP_01903369.1| Alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           AzwK-3b]
 gi|149811632|gb|EDM71467.1| Alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           AzwK-3b]
          Length = 239

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 23/228 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GGQ GD+G    DG RL++ T ++ + + I +  A  E  +      +
Sbjct: 28  VILDRTIFYPTGGGQPGDSGTLEWDGGRLEVATTLKSEGDAIVLVPAEPEP-LPPVGAHV 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +++++ R      H   H   H LS ++   V+      T   L FD+    P    +
Sbjct: 87  QQSLNWRRR----FGHMRVHTALHLLSVVIPLPVTGGSITETKGRLDFDM----PEALED 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGT---KYNDRVRVVSVEYEDGG 687
           + +IE  +ND++A +LPV    + +ED  A+ G    L     K   R+R+V +      
Sbjct: 139 IAAIEAALNDLVAADLPVTEAWITQEDLAATPGLVKTLSVAPPKGAGRIRLVRIGQGSDP 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           V     CGGTHV+ST +I         S+R G    +    +R   HL
Sbjct: 199 VDLQP-CGGTHVASTAQI--------GSLRLGKMEKKGRQNRRVYLHL 237


>gi|224107335|ref|XP_002314450.1| predicted protein [Populus trichocarpa]
 gi|222863490|gb|EEF00621.1| predicted protein [Populus trichocarpa]
          Length = 246

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 34/218 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT-E 568
           ++ D T F+ + GGQL DTG    A     +  + DV+ K +GI  H+ ++E G  +  E
Sbjct: 36  LILDSTIFHPQGGGQLADTGVITIAADSSFKFIVQDVRSK-DGIVYHYGVIEEGSGKDFE 94

Query: 569 MSLV------LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           M +V      L +D   R+  S  HSA HL+   L  +   H+        PDG    V 
Sbjct: 95  MEVVRGGEVFLFVDEARRKLNSRLHSAGHLMDACLEEVGLGHLEPGKGYHFPDGPF--VE 152

Query: 623 HSKPITSAELKS----IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-- 676
           +   I   EL+S    +E   N +I++   V   ++  E+A     A L G    D +  
Sbjct: 153 YKGTIPQNELQSKQHELELAANALISRGGKVSAAVLPYEEA-----AELCGGFLPDYIPK 207

Query: 677 ----RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               RVV +       +S+  CGGTHVS   EI+ L +
Sbjct: 208 DSTPRVVKLG------NSAVCCGGTHVSDISEIISLQV 239


>gi|33322806|gb|AAQ07138.1|AF496449_1 alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 193

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 11/187 (5%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEI 763
           I +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K ++  ++  ++  +
Sbjct: 7   IGVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASL 66

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE R  +  +A  K Q+N             + D+  ++ I       +L+ + D  + 
Sbjct: 67  QEELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKS 126

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + +S +++L G   E KA++LI + +  LD+   A DL +  A +   GG GGRP+MAQ+
Sbjct: 127 EGKSDVLIL-GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-XGGXGGRPNMAQA 184

Query: 878 GG--PNG 882
           GG  P G
Sbjct: 185 GGKKPEG 191


>gi|329957977|ref|ZP_08298409.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides clarus YIT 12056]
 gi|328522126|gb|EGF49242.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides clarus YIT 12056]
          Length = 582

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 23/209 (11%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MSLVLTIDYQNRRQ 582
           A G     G  +  G RL+ T+   +      +  I    IL+ E M   + ++  N+++
Sbjct: 382 ATGNTASNGIPVRLGFRLEGTERAGELLASGEYADIHVYSILKEELMEQQIQLNEHNKQE 441

Query: 583 LSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
               H+  H+++  +  + G      +H+ +  S       + D   +   T  ++KS+E
Sbjct: 442 YPPMHTTEHIVNQTMIRLFGCGRSVSAHIERKKS-------KLDYRLNACPTEEQIKSLE 494

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + VN++IA++LPV T  + +E+A        L    ++ VRVV V     G +   LC G
Sbjct: 495 EAVNEVIARHLPVTTEFITQEEAKGRFDLERLPEDASETVRVVKV-----GDYDECLCIG 549

Query: 697 THVSSTGEIMLLYIVS----ESSIRAGIR 721
           THV++T EI    I+S    E S R  +R
Sbjct: 550 THVANTSEIGTFKIISHDWDEESKRWRMR 578


>gi|53805116|ref|YP_113204.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|73919805|sp|Q60AZ3|SYT_METCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53758877|gb|AAU93168.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 638

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  I  DG  +D ++ +P T  +L++IE  ++++ A
Sbjct: 71  IRHSTAHLLAQAVKALYPKAQVTIGPVIQ-DGFYYDFSYERPFTPEDLEAIEAKMHELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-------DRVRVVSVEYEDGGVHSSALCGGT 697
           Q LPV  R M RE+AIA   +  LG  Y         R  V+S+ Y  G    + LC G 
Sbjct: 130 QALPVERRTMPREEAIAYFRS--LGEAYKAEIIEAIPRGEVISL-YSQGDF--TDLCRGP 184

Query: 698 HVSSTGEI 705
           HV  TG +
Sbjct: 185 HVPDTGRL 192


>gi|222617646|gb|EEE53778.1| hypothetical protein OsJ_00171 [Oryza sativa Japonica Group]
          Length = 1257

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVE----- 561
           G +  V+ D T FY + GGQ  DTG  + G G R  + DV+ K +G+  H+   E     
Sbjct: 40  GGRRAVLVDSTVFYPQGGGQPADTGVISAGGGTRFIVDDVRMK-DGVVFHYGRFEDAGDG 98

Query: 562 -RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                    S+ L +D + R   S  HSA HL+   +S I  SH         PDG   +
Sbjct: 99  CNSGFSEGQSVSLEVDAERRNLNSRLHSAGHLIDICMSNIGLSHFDPGKGHHFPDGPFVE 158

Query: 621 VTHSKPITSAELKS--IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-R 677
                P    + K   +E   N++I +   V+  I+  E+A      AL      D   R
Sbjct: 159 YKGVIPPDQLQDKKNELEKEANELITKGAKVLAYILPYEEAAQLCGGALPSYISKDSTPR 218

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +V       G +    CGGTHV+   +I ++  +  ++IR
Sbjct: 219 IVKF-----GDYPGGPCGGTHVA---DISIINNIKVTNIR 250


>gi|323142088|ref|ZP_08076936.1| threonine/alanine tRNA ligase second additional domain protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413475|gb|EFY04346.1| threonine/alanine tRNA ligase second additional domain protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 399

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 169/399 (42%), Gaps = 44/399 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  DQT F+ E GGQL D G  + D +   ++ V +K   I+  H   +   +  E+  V
Sbjct: 31  VELDQTVFFPEGGGQLSDRG-KLADAV---VSHVSEKDGHIY--HECDKPLEVGAEVEAV 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKPI 627
           L  D+  R      H   HLL +A   +     +G H++++   I  D         K +
Sbjct: 85  L--DWSVRLDRMQQHLGEHLLSYACWKLFKANNIGFHMNEDDVFIDLD---------KEL 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686
           T  EL   E   N+II +N PV    M+  +A+          +K    +R+VSVE  D 
Sbjct: 134 TDEELLQAELYTNEIIWENRPVHISYMDSIEAVKLKDKMRKFNSKLTGTLRIVSVEDAD- 192

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C GTH   TG +  + ++     + G  R+E + G RA      ++  L S+A
Sbjct: 193 ----ICTCCGTHPPFTGMLGSVKVIRHEKHKGGC-RVEFVCGHRALLDADAKNSTLLSVA 247

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-------AD-VNFMS 798
           + L V    V   V +   +    QL  AK KL L +E+    +        AD V  ++
Sbjct: 248 ASLSVKPEQVPAAVSKQKNDLLA-QLDIAKSKL-LKIEEEKLQETYAAAPVNADGVKVLA 305

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             +   D+K++K+ +  +   +++ + +L+ +  E+ +  + +  +   D  + + L   
Sbjct: 306 LPMEGHDAKDIKAFLPKVT-ALKNTLSLLLAVQPERISYAVALGVDTEGDCRSVIKLLNE 364

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +     GG GGG+   AQ G        + +  V   LK
Sbjct: 365 AF----GGRGGGKSDCAQGGADYCADWQEKLQSVVEKLK 399


>gi|292656836|ref|YP_003536733.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291371887|gb|ADE04114.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 398

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 19/226 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FY E GGQ  D G   G    + +  V+  A+G  VH    + G    + +  
Sbjct: 27  VVLDETYFYLEGGGQPADRGVLGG----VDVEHVRTNADGAVVHDLAADPGFAAGDEATG 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D   R      H+A+H+L+ A   I    +   G  I+ + +R D   S  +    L
Sbjct: 83  V-VDDDFRTYCMRAHTASHVLYGAGRRIF-DDLGYGGFDISAEKVRVDFETSTEVDDDAL 140

Query: 633 KSIEDNVNDIIAQNLPV------VTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYED 685
             +E  VN  +  +  V      V    +RE+ IA       G    ++ VRVVS++  D
Sbjct: 141 VELERLVNRAVWDSREVSWEEISVAEARDREE-IAFNVKTEEGVFSESETVRVVSIDGWD 199

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                 A CGGTHVS+T EI  + ++  S+   G+ R+E   G  A
Sbjct: 200 -----WAACGGTHVSNTVEIGPVEVLGRSNPGEGLTRVEFAVGSSA 240


>gi|225619668|ref|YP_002720925.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214487|gb|ACN83221.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 643

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 18/137 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +  +     G  I  DG  +D    KP T  +L  IED +  II 
Sbjct: 70  LRHSTSHLMAQAVRRLYPNTQVTIGPAIK-DGFYYDFDAEKPFTEEDLPKIEDEMKKIIK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---------YEDGGVHSSALCG 695
           +N+PVV ++MN+ +AI     A      N+  +V  +E         YE G      LC 
Sbjct: 129 ENIPVVRKVMNKNEAIEYFKKA------NEPYKVEIIEGIDADTVSFYEQGDFID--LCR 180

Query: 696 GTHVSSTGEIMLLYIVS 712
           G HV STG +    ++S
Sbjct: 181 GPHVPSTGYLKAYKLMS 197


>gi|116754895|ref|YP_844013.1| threonyl/alanyl tRNA synthetase, SAD [Methanosaeta thermophila PT]
 gi|116666346|gb|ABK15373.1| Ala-tRNA(Pro) hydrolase [Methanosaeta thermophila PT]
          Length = 232

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 25/218 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEMS 570
           V  D+T FY  +GGQ  D G  I GD +  ++  V+    GI    H +     ++ E  
Sbjct: 27  VYLDRTAFYPRSGGQPSDLGVLIRGDQV-FRVEGVEPSEHGICHRAHGLSPGDKVKGE-- 83

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID++ R ++  +H+A H+L   +    G+ ++  G+ I  D  R D +    + S 
Sbjct: 84  ----IDWERRYRIMRSHTACHVLSAVIFRETGALIT--GNQIDTDRSRVDFS----LESF 133

Query: 631 ELKSIEDNV---NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVVSVEYED 685
           +   IE  V   ND+I +  PV  R+M R++A+       L     +R  VRV+ +E   
Sbjct: 134 DRSMIETYVRMANDLIKEGHPVRVRLMTRDEAMEIPDLVRLAKNVPERESVRVIEIE--- 190

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            GV   A CGGTHV +T EI  + +V   +     RR+
Sbjct: 191 -GVDLQA-CGGTHVRNTSEIGEIRLVKAENKGKSNRRV 226


>gi|149239556|ref|XP_001525654.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451147|gb|EDK45403.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 439

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 18/265 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           K  V F+ T  + E GGQ  D G   I DG   +I +V            IVE+ I    
Sbjct: 52  KYGVEFEDTILFPEGGGQPFDKGTITILDGADKEIIEVNSILRDKLKAVHIVEKPI-EVG 110

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R  +   H+  HLL    S +  ++  +  S    D + +    SK + 
Sbjct: 111 TPVQLDVDWDRRLDIMQQHTGQHLL----SAVFDTYNMETLSWSMGDEINYIELPSK-VE 165

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYED 685
              +K ++D VN +I +  P+     + E        + L   Y+     +R+V +    
Sbjct: 166 DDIVKEVQDKVNQLIFEAHPITVVTPDAEGHEID--TSHLPDDYDQTQGIIRIVKI---- 219

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G   S  C GTH+SST +I  L +++++SIR G  R+    GQR         + LK++
Sbjct: 220 -GDLDSNPCCGTHLSSTSQIQSLVLLNQTSIRGGHSRLYFTCGQRVSKLSSEYFDILKTV 278

Query: 746 ASF-LKVSQGNVVGRVEEIWEEYRK 769
           +   L     +VV +V+++   YRK
Sbjct: 279 SGLQLSCQISDVVNKVDQLNTNYRK 303


>gi|4928220|gb|AAD33470.1|AF130452_1 alanyl-tRNA synthetase [Flavobacterium hydatis]
          Length = 57

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 33/57 (57%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
          FTN+GM  FK  F G   P    +   QKC+R  GKHNDL+ VG    HHTFF + G
Sbjct: 1  FTNAGMAQFKEYFLGNGTPKSPRIADTQKCLRVSGKHNDLEEVGIDTYHHTFFALKG 57


>gi|300692048|ref|YP_003753043.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299079108|emb|CBJ51771.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 239

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 21/201 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTE 568
           +  DQT FYA +GGQ GDTG   + DG  + I D    A+ + + H   +     +L   
Sbjct: 28  IELDQTVFYARSGGQAGDTGTLVLPDGQTVAIADTLYSADRLSLLHVPTDPADLDLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D     P +
Sbjct: 88  MPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRIDF--DLPES 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
           + + +++   +N +I ++ PV   ++  +   A       A          +R+V +E  
Sbjct: 140 TLDRETLTAQLNALIDRDTPVRIDLITPQALAAQPELVRTAGAAPPAGAATIRIVEIE-- 197

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
             G+     CGGTHV +TGEI
Sbjct: 198 --GIDRQP-CGGTHVRATGEI 215


>gi|207725304|ref|YP_002255700.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           MolK2]
 gi|206590539|emb|CAQ37501.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           MolK2]
          Length = 239

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 105/234 (44%), Gaps = 28/234 (11%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVER- 562
           AV  + VE+  DQT FYA +GGQ GD G   + DG  + I D    A+   + H   +  
Sbjct: 22  AVHPEGVEL--DQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSADRQTILHVPADPA 79

Query: 563 --GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G+L   + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 80  DLGLLAPGVPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYND 674
                P ++ E +++   +N +I ++ PV   ++  E    S    L+ T          
Sbjct: 134 F--DLPESTLERETLTAQLNALIERDTPVRIDLITPE--ALSAQPELVRTAGAAPPAGMA 189

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRAGIRRIEAIT 727
            +R+V ++    G+     CGGTHV +TGEI  + +   E   R   R + A+T
Sbjct: 190 AIRIVEIK----GIDRQP-CGGTHVRATGEIGPVLVTRIEKKSRQNRRVVVALT 238


>gi|145361275|ref|NP_683570.3| ATP binding / alanine-tRNA ligase/ nucleic acid binding /
           nucleotide binding [Arabidopsis thaliana]
          Length = 253

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 27/213 (12%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIV-----ER 562
           ++ ++ + T F+ + GGQ  DTG  +  G  ++  + DV+ K +GI +H+ +      E 
Sbjct: 33  RIALILESTVFHPQGGGQPSDTGLIVFSGSDLKFSVQDVRSK-DGIVLHYGVFEGSNPES 91

Query: 563 GILRTE-MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           GI   +   + LT+D   R+  S  HSA HLL   +  +   H+        PDG   + 
Sbjct: 92  GIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLDMCMQKVGLGHLEPGKGYHFPDGPFVEY 151

Query: 622 THSKPITSAELKS--IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--- 676
             S P    ++K   +E   N++I++   V   I+  E+     A+ L G    D +   
Sbjct: 152 KGSVPQEEFQVKQKELEAEANELISKGGKVYAAILPYEE-----ASVLCGGSLPDYISKG 206

Query: 677 ---RVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
              R++ +     G      CGGTHVS+  +I+
Sbjct: 207 STPRIIKL-----GDSPGCPCGGTHVSNLSDII 234


>gi|169826273|ref|YP_001696431.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168990761|gb|ACA38301.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 153/375 (40%), Gaps = 38/375 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--FVHHAIVE-RGILRTEM 569
           VV   T FY   GGQ  DTG   G    + + DV+K  E I  ++   I E +GI+    
Sbjct: 66  VVLSNTAFYPTGGGQPHDTGTLNG----IDVIDVEKNGEEIRHYMQGDISELKGIVHG-- 119

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
               T+++  R      H+  H+L  A   +  +        +    +  D+     +T 
Sbjct: 120 ----TLNWSRRFDHMQQHAGQHILTAAFVELFDAQTV--SFHLGSQHVTIDIA-VDTLTE 172

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +L + E   N++I +NLP+ T  +   + +       +    + R+ ++   Y+  G  
Sbjct: 173 QQLAAAEARANEVILENLPIETTWITENELVHYHLRKEVAVAGDIRLVIIP-NYDYNG-- 229

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               CGGTH +STG++  + I+    ++  + R+  + GQR    L  + + L  +A  L
Sbjct: 230 ----CGGTHPTSTGQVNAIKILGTEKMKGNV-RVSFVCGQRVLHELAMRKKVLGDVARQL 284

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEV 804
            V +      + +I    +     H +R L    E+L  ++   +     N M+    + 
Sbjct: 285 SVPEVEAATALTKILSAQK-----HTERALVAAKEELLTYEAKALVSNSGNLMTAAFQQR 339

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
             +EL+ +   +  +    I +LV  S E K   +    +++     A+    L    L 
Sbjct: 340 TMQELQKLARTIVSEHDDMITLLVSES-EGKLQFVAARGKNVSKSMKAIAEKALP---LI 395

Query: 865 GGGGGGRPHMAQSGG 879
            G GGG   M Q GG
Sbjct: 396 NGKGGGSDQMVQGGG 410


>gi|226229209|ref|YP_002763315.1| putative alanyl-transfer RNA synthetase [Gemmatimonas aurantiaca
           T-27]
 gi|226092400|dbj|BAH40845.1| putative alanyl-transfer RNA synthetase [Gemmatimonas aurantiaca
           T-27]
          Length = 410

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 171/394 (43%), Gaps = 47/394 (11%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V+G    V  D++ FY  +GGQ  D G  + D   + + DV  + E +  HH     G+ 
Sbjct: 35  VAGDGRIVYLDRSAFYPTSGGQPHDLGW-LAD---ISVVDVVDEDERV-AHHLAEPLGLP 89

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHS 624
              M + L +D   R      H+  HLL   ++   G   VS +   IT      DV  +
Sbjct: 90  IGAMVVGL-VDMARRFDHMQQHTGQHLLSALMADRYGWPTVSVHFGDITST---VDVAAA 145

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDR---VRVVS 680
           + +T A+L  IE   N +   NL V    ++ EDA  ASG       K +DR   +R+V+
Sbjct: 146 E-VTPAQLIEIEQRANALALDNLEVS---VSYEDAETASGL-----RKASDRSGTLRIVT 196

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           ++    G+  SA CGGTHV+ T EI  + +      R G  RIE + G RA        +
Sbjct: 197 ID----GLDRSA-CGGTHVARTAEIGAVLLRRAERTR-GHTRIEFVCGHRAVQRARLDAD 250

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH--------KIA 792
            L   A  L  +  +V   VE++ +  + L+     R+L+     L+ H         I 
Sbjct: 251 LLTRAARPLSAAPHDVPALVEQMQQRLQDLE-----RELKRTTLALAAHDALAHWNAAIP 305

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           D N +  +   V+     S   A Q   + G ++LV  +      VL+   +D+    +A
Sbjct: 306 DANGVRRVRLTVNGAVKDSEALAQQLTARGGCVVLV--TSATVGGVLLATADDV--SIDA 361

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
               R + + +GG GGG  P +AQ   P G+  +
Sbjct: 362 GQQLRAALQSVGGRGGG-SPRVAQGAVPGGSDGN 394


>gi|50552115|ref|XP_503532.1| YALI0E04246p [Yarrowia lipolytica]
 gi|49649401|emb|CAG79113.1| YALI0E04246p [Yarrowia lipolytica]
          Length = 415

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 168/413 (40%), Gaps = 56/413 (13%)

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
           CQ  P      + ++   ++   E+ +   +  K EV  + T  + E GGQ  D G    
Sbjct: 14  CQNEPY-----LKALTTRVIGCEEVPKTKKTPAKYEVELEDTILFPEGGGQPADLGTLSY 68

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +   + +  V++  +G+   H          E+   + +D +  R+   +H   H   H 
Sbjct: 69  EETSVPVNYVKR--DGLIAKHETDSP----IEVGTTVNVDLEWARRF--DHMQQHTGQHL 120

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           LS I  +   +  +    D   + V   K +T  E+ +++  VN +I Q+L + T I+  
Sbjct: 121 LSAIFDTRKLETLAWSLGDKFCY-VELPKRVTREEMDAVQAEVNRVIQQDLKITTTIITN 179

Query: 657 EDAIASGAAALLGTKYNDR------VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           E+  A+   +++    +D       +RVV++    G +  +  CG TH++ST EI  + +
Sbjct: 180 EEEKAAADPSVVEKIPDDYDVNNGVIRVVNI----GDIDHNPCCG-THLNSTREIGSVAL 234

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---------- 760
           +   ++R    R+  + G R   +       +K + S L     ++  ++          
Sbjct: 235 LHTQAMRGSNCRVFFVCGDRVHKYASEAHRTIKMVNSHLSCLTEDIENKILALNQNLKDA 294

Query: 761 ---EEIW-EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDA 815
              E++W  E       +AK+ L+           A ++F++ I  E+ D  E K+ + A
Sbjct: 295 SNREKMWMAEVATFTAHNAKQDLETKNVVFVYKPEASLDFLNVIAKEIGDLAEGKTAILA 354

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             +    G IM++G               D LD  +A  +  +   V GGG G
Sbjct: 355 CGQGTAGGAIMIIG---------------DKLDEVSA-KVKDIVVNVKGGGKG 391


>gi|121605747|ref|YP_983076.1| threonyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|166225475|sp|A1VR77|SYT_POLNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120594716|gb|ABM38155.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas
           naphthalenivorans CJ2]
          Length = 635

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILG 602
           T + K A G  V   +V+   L ++ S +  +  ++   L  I HSA HLL +A+  +  
Sbjct: 29  TGLAKAALGGKVDGKLVDTSFLISQDSALSIVTAKDAEGLELIRHSAAHLLAYAVKELFP 88

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                 G  I  +G  +D ++ +P T  +L +IE  + +++A++ PV  R++ R++A+A 
Sbjct: 89  EAQVTIGPVIE-NGFFYDFSYKRPFTPEDLVAIEKRMAELVAKDEPVTRRVLPRDEAVAY 147

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIV 711
             +  LG  Y   +       ED  ++       LC G HV STG++    ++
Sbjct: 148 FKS--LGEYYKAEIIASIPANEDVSLYREGKFEDLCRGPHVPSTGKLKFFKLM 198


>gi|189463515|ref|ZP_03012300.1| hypothetical protein BACCOP_04234 [Bacteroides coprocola DSM 17136]
 gi|189429782|gb|EDU98766.1| hypothetical protein BACCOP_04234 [Bacteroides coprocola DSM 17136]
          Length = 153

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 19/155 (12%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPIT 628
           ++  N+++    H+  H+++  +  I G      +H+ +  S       + D    K  +
Sbjct: 7   LNEHNKQEYPPMHTCEHIVNRTMVNIFGCGRAVSAHIERKKS-------KLDFALPKAPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++++IE  VN++IA++LPV T  + +E+A+       L    +D VR+V V     G 
Sbjct: 60  VEDIENIEKTVNEVIARHLPVTTEFITQEEAVGRFDLKRLPDNASDTVRIVRV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   LC G HV++T EI    I+S S  + GI RI
Sbjct: 115 YDECLCIGLHVTNTSEIGTFRIIS-SDYKDGIFRI 148


>gi|73669588|ref|YP_305603.1| Ala-tRNA(Pro) hydrolase [Methanosarcina barkeri str. Fusaro]
 gi|121722150|sp|Q46AR9|ALAXM_METBF RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|72396750|gb|AAZ71023.1| Ala-tRNA(Pro) hydrolase [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 105/225 (46%), Gaps = 20/225 (8%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGI 553
           +++ E   E V+  K  VV D+T FY E+GGQ  DTG  +   DG    +  V+K    I
Sbjct: 12  MKEFEATVEKVTDDKF-VVLDRTVFYPESGGQPSDTGKLVRESDGAEFNVLYVRKFNGDI 70

Query: 554 FVHHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
              H I    +   L+    +   ID+  R +    H+ATH++ + +    G+ ++ N  
Sbjct: 71  --SHEIDGENVSNGLKAGDKVKGFIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQL 128

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLG 669
            +    + F +        AE + I    ND+IAQ  PV   +++R++A         L 
Sbjct: 129 GLDQSRVDFSLEVFDRDKFAEYEKI---ANDLIAQKSPVNLYLVSRKEAEEKLSRLTTLA 185

Query: 670 TKYND---RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             ++D    VR+V +E    GV   A CGGTHV +T EI  + I+
Sbjct: 186 KGFSDEIKEVRIVEIE----GVTIEA-CGGTHVKNTEEIKGVKII 225


>gi|229134426|ref|ZP_04263239.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST196]
 gi|228649047|gb|EEL05069.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST196]
          Length = 411

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 28/255 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G  + + + +V  +     + H I+E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNGIPV-INVEEVNGE-----IRHFIIEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDVTHSKPITSA 630
             ID++ R     +H   H   H LS     H  +   G  +  + +  D+  +  +++ 
Sbjct: 94  GKIDWERR----FDHMQQHTAQHILSAAFWDHFNIPTIGFHLGKETITIDL-ETANLSTE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVH 689
            ++      N I+ +N P+  + MN E+A A            + +RVV +E Y+  G  
Sbjct: 149 TVEKAAQIANQIVFENHPIRIKWMNLEEAKA--LPLRKEPTMTENIRVVIIENYDYNG-- 204

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLASF 748
               CGGTH   TGE+  + ++     + GI R+  I G R+   LMGQ ++ +K ++  
Sbjct: 205 ----CGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLK-LMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEI 763
           L  S  ++  +V ++
Sbjct: 259 LNSSDTDIPAKVAQL 273


>gi|56067693|gb|AAV70314.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067695|gb|AAV70315.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 144

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 7/114 (6%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH 557
            VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V  +  G  +H 
Sbjct: 34  FVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHI 92

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGS 610
            +VE G LR    +   +D   RRQL++ NHSATH L+H+L  +LG    Q GS
Sbjct: 93  GVVE-GTLRVGDEVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGS 144


>gi|146342087|ref|YP_001207135.1| putative alanyl-tRNA synthetase-like protein [Bradyrhizobium sp.
           ORS278]
 gi|146194893|emb|CAL78918.1| putative alanyl-tRNA synthetase related protein [Bradyrhizobium sp.
           ORS278]
          Length = 243

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 25/202 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+  ++PFY   GGQL D G    +GI   +T  +  ++G++  H   +  +     ++ 
Sbjct: 31  VLLSRSPFYPGGGGQLPDRGTIAWNGIVRDVTGFEPTSDGLW--HQFGDDAV--PWGTIT 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT----PDGLRFDVTHSKP-I 627
           L +D   R+++   H+  HL++ A+ T+       +G+ +T     D   F V    P +
Sbjct: 87  LRVDAAFRQRMCEQHTVAHLVNSAVYTLF------DGALLTGVRMTDTDEFSVDFDLPKV 140

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYND-RVRVVSVE 682
              +L+++ED VN  I+   PV    M  +DA A+     A ++   +  D  +R+V ++
Sbjct: 141 APEQLRAVEDAVNAAISDGRPVRAFDMPYDDAQATAGLFRAKSVAPPRQADGMIRIVDID 200

Query: 683 YEDGGVHSSALCGGTHVSSTGE 704
               G+   A CGGTH+ ST +
Sbjct: 201 ----GLDRQA-CGGTHLVSTAQ 217


>gi|330508520|ref|YP_004384948.1| alanyl-tRNA synthetase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929328|gb|AEB69130.1| alanyl-tRNA synthetase domain protein [Methanosaeta concilii GP-6]
          Length = 233

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 15/213 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY ++GGQ  D G    D     +  V+       +H  I++R  L     + 
Sbjct: 28  VILEETAFYPQSGGQPSDLGSLFRDEDEFCVLRVEPSGP---IH--IMDRTGLAPGDRVS 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R +   +H+A H+L   +    G+ ++ N   I    + F +   +    +++
Sbjct: 83  GRIDWDRRYRFMRSHTACHILSSVIFDKTGARITGNQIDIARSRVDFSL---EAFDKSKI 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVVSVEYEDGGVHS 690
               D  N +I+++  V   ++ R +A+A      L     DR  +RVV +E    GV  
Sbjct: 140 AEYVDQANQLISEDHAVRISLLPRAEAMAIPDLVRLAMDVPDREEIRVVEIE----GVDR 195

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            A CGGTHV  TGEI  + +V   +     RR+
Sbjct: 196 QA-CGGTHVGRTGEIKGIKLVKAENKGKANRRV 227


>gi|320528734|ref|ZP_08029886.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
 gi|320130944|gb|EFW23522.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
          Length = 391

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 176/401 (43%), Gaps = 65/401 (16%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E+V   T FY E GGQ  D G   G    +++  VQ++ E I VH   + +  L    ++
Sbjct: 32  ELVLKDTIFYPEGGGQPCDKGTIQG----VEVIAVQREKERI-VH---ITKQPLAPGENV 83

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILG-SHVS-QNGSCITPDGLRFDVTHSKPITS 629
              ID++ R  L  NH+  H+    +  + G S+V    G  I  D        +  +T 
Sbjct: 84  HCEIDWEYRFDLMQNHTGEHIFSGVVKQLYGYSNVGFHMGEYICAD-------FNGNLTE 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR--------VRVVSV 681
             ++ +E  VN  I  NL V       ++ + S +      KY+ R         R++S+
Sbjct: 137 ENIEEVERRVNQAIWMNLCV-------QEILCSPSET---AKYDYRSKISIEGTTRIISI 186

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              DG  +    C G HV +TGEI +  +++    R    R+  ++G+RA ++L    ++
Sbjct: 187 ---DG--YDMCACCGMHVKNTGEIGICKVINFEKSRNKT-RVFLLSGRRAFAYLSHIHQE 240

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
             S++  L      +   V  + + Y  +Q  +    +++ ++D     I D    + ++
Sbjct: 241 NSSISKLLSAKPLEISTAVSHLQQRYVDVQKAYRTVLMEMMMKDADQIPIQDAIIYTSVL 300

Query: 802 SEVDSKELKSVMDALQKKIQSGI--IMLVGISKEKKASVLIVVTEDLLD---RFNAVDLA 856
           +  DS+ +++  +   + I+ GI  +M++  ++   A V++  T DLL     FNA   A
Sbjct: 301 A--DSEGMRAFCN---RCIEMGISTVMVIAKTEVGYAYVIMSHTIDLLSIRAEFNAAIHA 355

Query: 857 RLSAKVLGGGGGGGRPHMAQ---SGGPNG-NKADQAIAGVA 893
           +          GGG   M Q   + GP   + A  A+ G++
Sbjct: 356 K----------GGGNHEMMQGSCTAGPTEISIAFHAVTGIS 386


>gi|229018813|ref|ZP_04175660.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1273]
 gi|229025054|ref|ZP_04181482.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1272]
 gi|228736260|gb|EEL86827.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1272]
 gi|228742434|gb|EEL92587.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1273]
          Length = 411

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 40/276 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + +++V++  +G  + H IVE+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPNDTGTLNG----IPVSNVEE-VDG-EIRHFIVEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             ID++ R      H+A H+L      H  + TI G H+ +    IT D L  +  H++ 
Sbjct: 94  GKIDWERRFDHMQQHTAQHILSAAFWDHFNIPTI-GFHLGK--ETITID-LETENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+    MN E+A              + +RVV +E ++ 
Sbjct: 150 VEKAVQIA-----NKIVFENHPIRIEWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAK 776
           ++  L  S+ ++  +V ++     E  + LQ ++ K
Sbjct: 255 VSKQLNSSEADIPAKVSQLLTSQKENEKALQTMNEK 290


>gi|253568623|ref|ZP_04846034.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251842696|gb|EES70776.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 158

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+++    H+A HLL+  +    G   S+N   I     + D       T AE+++IED
Sbjct: 10  HNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILPTCPTDAEIQTIED 68

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+II+QNLPV    M  E A      + L    ++ +R++ +     G + +  C G 
Sbjct: 69  KVNEIISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIIRI-----GDYDACACIGL 123

Query: 698 HVSSTGEIMLLYIVS 712
           HVS+T E+    I+S
Sbjct: 124 HVSNTSEVGTFKIIS 138


>gi|330998666|ref|ZP_08322396.1| threonine/alanine tRNA ligase second additional domain protein
           [Parasutterella excrementihominis YIT 11859]
 gi|329576527|gb|EGG58035.1| threonine/alanine tRNA ligase second additional domain protein
           [Parasutterella excrementihominis YIT 11859]
          Length = 388

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 42/372 (11%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV D T FY E GGQ  D G  +G+   + +  V     G  + H I +   L    ++
Sbjct: 32  EVVLDDTAFYPEGGGQPSDEG-TLGEAKVIFVKRV-----GPEIVHYIDKP--LEVGSTV 83

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID++ R     NH+  H+    +       +   G  + PD +  D +   P+ S  
Sbjct: 84  IGKIDWERRFDNMQNHTCEHIFSGLVHQKY--KLENVGFHMDPDDITVDFSGEIPMES-- 139

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVSVEYED 685
           +  +E  VN  I Q++ +       E        AL   +Y  +      VR+V++    
Sbjct: 140 IPELEQLVNQAITQDIDLKIEFPTEE--------ALEAMEYRSKKELHGVVRIVTIP--- 188

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G    A C GTHV  +GEI +  I+  S  R G  R+  + G+RAR     + +++  +
Sbjct: 189 -GCDRCACC-GTHVRRSGEIGMFKILDASKHRGGT-RVRFVAGERARRDYGWRVKEIAKV 245

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           ++        +        EE +      A+R  +  ++ ++   ++    +     ++ 
Sbjct: 246 SALFSAKPHEIAKAAANFIEEGKAKDQKSAQR-TERYLQFVASGLVSRNGLVKVFEEDLS 304

Query: 806 SKELKSVMDALQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
             ELK     L++K  +S I +   I  E   + +I  ++  L +F+    A+L+     
Sbjct: 305 PFELKRFAGMLKEKFPESSIGVFSPI--EGGFNYVIASSDPELPKFSKSLNAKLN----- 357

Query: 865 GGGGGGRPHMAQ 876
            G GGGR  M Q
Sbjct: 358 -GRGGGRDGMVQ 368


>gi|257463065|ref|ZP_05627467.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 248

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 25/237 (10%)

Query: 513 VVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V   + PFY +  GGQLGD G  IG    LQ+ + +     +++   + E+     E   
Sbjct: 17  VSIQENPFYPDGKGGQLGDRG-KIGTAKILQVFEKE-----LWLDSPLEEK----KEYDY 66

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPITS 629
           V  ID + +++++  H+A H+     S++   + S N  G  +  D    D+ H   I  
Sbjct: 67  V--IDSERQQEIAQQHTAQHIF----SSLAHRYFSWNTVGFRMAEDYSTVDLDHL-DIPF 119

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +++ +E  VN+ I Q+L +    ++ E A        + +K    VR V V     GV 
Sbjct: 120 EQIRFLEQEVNNTIEQSLSLRIFSLSSEKAHQLSLRKAISSKIQGEVRFVEV----PGVD 175

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             A CGG HV +T EI    I+   +IR    R   + G+RA      + +  KSL+
Sbjct: 176 LCA-CGGFHVKNTLEIRAFKIIHRENIRGKFTRFYFLAGKRALQDYFQKHQITKSLS 231


>gi|317060667|ref|ZP_07925152.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686343|gb|EFS23178.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 249

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 25/237 (10%)

Query: 513 VVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V   + PFY +  GGQLGD G  IG    LQ+ + +     +++   + E+     E   
Sbjct: 18  VSIQENPFYPDGKGGQLGDRG-KIGTAKILQVFEKE-----LWLDSPLEEK----KEYDY 67

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPITS 629
           V  ID + +++++  H+A H+     S++   + S N  G  +  D    D+ H   I  
Sbjct: 68  V--IDSERQQEIAQQHTAQHIF----SSLAHRYFSWNTVGFRMAEDYSTVDLDHL-DIPF 120

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +++ +E  VN+ I Q+L +    ++ E A        + +K    VR V V     GV 
Sbjct: 121 EQIRFLEQEVNNTIEQSLSLRIFSLSSEKAHQLSLRKAISSKIQGEVRFVEV----PGVD 176

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             A CGG HV +T EI    I+   +IR    R   + G+RA      + +  KSL+
Sbjct: 177 LCA-CGGFHVKNTLEIRAFKIIHRENIRGKFTRFYFLAGKRALQDYFQKHQITKSLS 232


>gi|217416402|ref|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1 [Homo sapiens]
 gi|119581307|gb|EAW60903.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_a [Homo
           sapiens]
 gi|194380464|dbj|BAG58385.1| unnamed protein product [Homo sapiens]
          Length = 586

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 159/368 (43%), Gaps = 60/368 (16%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K      +VV + T  + 
Sbjct: 172 KKVSTKRPPPAMDDLDFTTTVVSCCPA-----ELQTEGSNGKKEVLSGFQVVLEDTVLFP 226

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R  
Sbjct: 227 EGGGQPDDRG-TINDISVLRVTRRGEQADHF-------TQTPLDPGSQVLVRVDWERRFD 278

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKP-ITSAELKSIEDNVN 640
               HS  HL+     T +  H+ +  +     G  R  +    P +T+ ++ +IE +VN
Sbjct: 279 HMQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSVN 333

Query: 641 DIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           + I   LPV  R ++ +D  +   +   L   +   +RVV++E    GV S+ +C GTHV
Sbjct: 334 EKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIE----GVDSN-MCCGTHV 388

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  ++ ++ I+     +     +  ++G R    +       K+L + LK    + V  
Sbjct: 389 SNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEA 448

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-------------------KIADVNFMSHI 800
           V+++    + LQ    K  L L + DL+ H                   K  D  FM+ I
Sbjct: 449 VKKLQNSTKILQ----KNNLNL-LRDLAVHIAHSLRNSPDWGGVVILHRKEGDSEFMNII 503

Query: 801 ISEVDSKE 808
            +E+ S+E
Sbjct: 504 ANEIGSEE 511


>gi|304403794|ref|ZP_07385456.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304346772|gb|EFM12604.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 637

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 10/140 (7%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D Q  R +   HS  H++  A+  +  +   + G   +  DG  +D+  +KP++S 
Sbjct: 60  LVTLDSQLGRDIH-RHSTAHVMAQAIKRLFPNQSVKLGIGPVIEDGFYYDIDIAKPLSSE 118

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YED 685
           +L +IE  +N II +NLP+V R ++RE+A+ +        K  + +R +  +     YE 
Sbjct: 119 DLVAIEYEMNHIIGENLPIVRRAVSREEAVQTFEECEEPLKL-ELIRDLPADAVITIYEQ 177

Query: 686 GGVHSSALCGGTHVSSTGEI 705
           G    S LC G H+ STG I
Sbjct: 178 GEF--SDLCRGPHLPSTGRI 195


>gi|222110646|ref|YP_002552910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|254783520|sp|B9MHX8|SYT_DIAST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221730090|gb|ACM32910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 639

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLAAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PVV R++ R++A+A      LG  Y   + + S+        Y +GG     LC G 
Sbjct: 130 KDEPVVRRVLPRDEAVAYFKG--LGEHYKAEI-IASIPTNEDVSLYREGGFED--LCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++    ++
Sbjct: 185 HVPSTGKLKFFKLM 198


>gi|229174283|ref|ZP_04301816.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus MM3]
 gi|228609140|gb|EEK66429.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus MM3]
          Length = 411

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 121/258 (46%), Gaps = 34/258 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H IVE+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGT-LNDIDVINVEEIHGE-----IRHFIVEK--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LEAENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+ T  MN E+A A            + +RVV +E Y+ 
Sbjct: 150 VEKAVHIA-----NKIVFENHPIRTLWMNLEEAKALPLRK--EPTLTENIRVVIIENYDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K +
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLMGHQQQIIKDV 255

Query: 746 ASFLKVSQGNVVGRVEEI 763
           +  L  S+ ++  +V ++
Sbjct: 256 SKQLNSSESDIPAKVAQL 273


>gi|148256966|ref|YP_001241551.1| putative alanyl-tRNA synthetase-like protein [Bradyrhizobium sp.
           BTAi1]
 gi|146409139|gb|ABQ37645.1| putative alanyl-tRNA synthetase related protein [Bradyrhizobium sp.
           BTAi1]
          Length = 243

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 15/196 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+  ++PFY   GGQL D G    +GI  ++   +  A+G++  H I +  I   +  + 
Sbjct: 31  VLLARSPFYPGGGGQLPDRGTIAWNGIVREVVGFEVTADGLW--HLIGDDAI--PDGMIE 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D   R+++   H+  HL++ A+ T+    +         D    D    K +   +L
Sbjct: 87  LRVDQAFRQRMCEQHTVAHLVNSAVYTLFDGALLTGVRMTETDEFSVDFDLPK-VAPEQL 145

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYND-RVRVVSVEYEDGG 687
           ++++D VN  IA + PV T  M+ + A  +     A ++   +  D  +R+V ++    G
Sbjct: 146 RAVQDAVNTAIADDRPVRTFDMDYDTAQTTAGLFRAKSVAPPRQADGLIRIVDID----G 201

Query: 688 VHSSALCGGTHVSSTG 703
           +   A CGGTH++ST 
Sbjct: 202 LDRQA-CGGTHLASTA 216


>gi|121594741|ref|YP_986637.1| threonyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|166223314|sp|A1W8I6|SYT_ACISJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120606821|gb|ABM42561.1| Ser-tRNA(Thr) hydrolase [Acidovorax sp. JS42]
          Length = 639

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLAAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PVV R++ R++A+A      LG  Y   + + S+        Y +GG     LC G 
Sbjct: 130 KDEPVVRRVLPRDEAVAYFKG--LGEHYKAEI-IASIPTNEDVSLYREGGFED--LCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++    ++
Sbjct: 185 HVPSTGKLKFFKLM 198


>gi|159110639|ref|XP_001705570.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia ATCC 50803]
 gi|157433657|gb|EDO77896.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia ATCC 50803]
          Length = 401

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 23/265 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V V    + F+ ++GGQLGD G +IG G+ +  T   ++   + +           +++ 
Sbjct: 25  VYVRLSHSYFFPQSGGQLGDVG-SIG-GLPVITTSCDEEHRPLHLMATAPP-----SDIE 77

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L  +++   RRQ SI+H+  H+L         +  S     + PD    ++  S  +   
Sbjct: 78  LDCSVNEVYRRQNSISHTGQHILSGVAEQCFQATTSSYT--MGPDLSTLEL--SVKLDMD 133

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDG 686
           +L  IE   NDII Q +PV + +++ E+ +  G  + L        N  +RVV +E  D 
Sbjct: 134 KLLEIESRANDIIRQCIPVKSILIHSEEEL--GKYSELSRPKLKSLNFPLRVVDIEGVD- 190

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
               + LC GTH  +TGE  L+ +    S R G+ +++   G RA S +  + + L  + 
Sbjct: 191 ----TCLCCGTHAGNTGECGLVKVFGCESSRGGV-KVQFAVGDRAVSLINNRLKTLSIIC 245

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQ 771
           + L      V   VE +  E + L+
Sbjct: 246 ASLTTGHDAVAKSVEALLAEGKVLK 270


>gi|225572851|ref|ZP_03781606.1| hypothetical protein RUMHYD_01042 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039777|gb|EEG50023.1| hypothetical protein RUMHYD_01042 [Blautia hydrogenotrophica DSM
           10507]
          Length = 384

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 20/260 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV  DQT FY E GGQ  DTG  +G   + ++ +V  K +G   H        L     +
Sbjct: 31  EVALDQTAFYPEGGGQPYDTG-TLG---KAKVLEVHSK-DGEVWHDTDCP---LEVGSQV 82

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R  L   HS  HL+   +    G      G  +  D +  D     P    +
Sbjct: 83  EGNIDWDRRFDLMQQHSGEHLVSGLIHEKYG--YDNVGFHMGTDRITIDFNGIVP--EED 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  +E+ +N++I +N+   TR++   +            + +  VR+V    E  G    
Sbjct: 139 LPKLEEKINEVIWENIQ--TRVLYPTEEELKQLCYRSKKELSGWVRLV----EFPGTDLC 192

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           A C G HV+ TGEI ++ ++S    R G+ R+E I+G+R   +L    E+   ++  L  
Sbjct: 193 ACC-GLHVTYTGEIGMVKLLSVQKFREGV-RMEMISGKRVLDYLNEISEQNHQISVQLSA 250

Query: 752 SQGNVVGRVEEIWEEYRKLQ 771
             G     V  + EE  +L+
Sbjct: 251 KPGETAAAVRRLAEENFRLR 270


>gi|289580836|ref|YP_003479302.1| threonyl/alanyl tRNA synthetase SAD [Natrialba magadii ATCC 43099]
 gi|289530389|gb|ADD04740.1| Threonyl/alanyl tRNA synthetase SAD [Natrialba magadii ATCC 43099]
          Length = 446

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 131/299 (43%), Gaps = 49/299 (16%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A+ G+++    + + FY E+GGQ  D G   G      + DVQ  A+G  VH  + E   
Sbjct: 21  AIDGRRI--WLETSYFYGESGGQPADRGTIDG----AAVEDVQL-ADGKQVH-VMAEEPT 72

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
            RT   ++ +ID+  R      H+A+H+L+ A   +L   +   G  I  + +R D+  +
Sbjct: 73  FRTGQRVLCSIDWAFRMYCMRAHTASHVLYGAGRRLL-DDLGYGGFDIGEEKVRVDLETT 131

Query: 625 KPITSAELKSIEDNVNDIIAQNLPV------VTRIMNREDAIASGAAALLGTKYNDRVRV 678
             +    L  ++  VN  + ++ PV      V     RED IA   A   G     RVR+
Sbjct: 132 SDLDDETLLELDSLVNKAVWESRPVSWDDIPVADARERED-IAFNEATEDGAFQKGRVRI 190

Query: 679 VSV--EYEDGG--------------VHSS----------ALCGGTHVSSTGEIMLLYIVS 712
           V++    E+GG              V +S          A CGGTHV +T EI  + ++ 
Sbjct: 191 VTIGGADENGGNGTRARNRSSSGPTVTTSTDGSAEPWDVAACGGTHVRNTREIGPVTVLG 250

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            S+   G+ R+E   G  A       D + +  A+ L   Q   V  +EE+ +E  +LQ
Sbjct: 251 RSNPGEGMTRVEFSVGPTA------IDRRREEKATALTARQELGV-PLEEVGDELTRLQ 302


>gi|115434218|ref|NP_001041867.1| Os01g0120400 [Oryza sativa Japonica Group]
 gi|53791243|dbj|BAD52448.1| unknown protein [Oryza sativa Japonica Group]
 gi|53791322|dbj|BAD52587.1| unknown protein [Oryza sativa Japonica Group]
 gi|113531398|dbj|BAF03781.1| Os01g0120400 [Oryza sativa Japonica Group]
 gi|125524198|gb|EAY72312.1| hypothetical protein OsI_00165 [Oryza sativa Indica Group]
 gi|215740772|dbj|BAG96928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766588|dbj|BAG98747.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 264

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVE----- 561
           G +  V+ D T FY + GGQ  DTG  + G G R  + DV+ K +G+  H+   E     
Sbjct: 40  GGRRAVLVDSTVFYPQGGGQPADTGVISAGGGTRFIVDDVRMK-DGVVFHYGRFEDAGDG 98

Query: 562 -RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                    S+ L +D + R   S  HSA HL+   +S I  SH         PDG   +
Sbjct: 99  CNSGFSEGQSVSLEVDAERRNLNSRLHSAGHLIDICMSNIGLSHFDPGKGHHFPDGPFVE 158

Query: 621 VTHSKPITSAELKS--IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-R 677
                P    + K   +E   N++I +   V+  I+  E+A      AL      D   R
Sbjct: 159 YKGVIPPDQLQDKKNELEKEANELITKGAKVLAYILPYEEAAQLCGGALPSYISKDSTPR 218

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +V       G +    CGGTHV+   +I ++  +  ++IR
Sbjct: 219 IVKF-----GDYPGGPCGGTHVA---DISIINNIKVTNIR 250


>gi|323691798|ref|ZP_08106055.1| hypothetical protein HMPREF9475_00917 [Clostridium symbiosum
           WAL-14673]
 gi|323504164|gb|EGB19969.1| hypothetical protein HMPREF9475_00917 [Clostridium symbiosum
           WAL-14673]
          Length = 384

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 30/260 (11%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T FY E GGQ  DTG  +G     ++ DV ++ E + +H+   E   L+   ++
Sbjct: 29  EVILDRTAFYPEGGGQPSDTG-TLGTA---RVLDVHERGEEV-IHYTEQE---LQEGQTV 80

Query: 572 VLTIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKP 626
             TID+ NR      HS  H    L+H       +G H+      I  +G+         
Sbjct: 81  TGTIDWDNRFSNMQQHSGEHIVSGLIHGRYGYDNVGFHMGHEEMTIDLNGI--------- 131

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  EL  IE   N+I+  N  +     + E+       +    + + RVR+V V   D 
Sbjct: 132 LTWEELMEIEKEANEIVFANRQIKATYPSEEELQKLDYRS--KKELSGRVRIVEVPGAD- 188

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C GTHV  TGEI  +  +S    + G+ RI  + G +A      + ++  +++
Sbjct: 189 ----CCACCGTHVEYTGEIGAVKFLSMIHYKGGV-RISMLCGAKAMEDYRRKTDQTAAIS 243

Query: 747 SFLKVSQGNVVGRVEEIWEE 766
           + L      +   VE +  E
Sbjct: 244 NLLSAKPDRLKEAVERLKNE 263


>gi|310659329|ref|YP_003937050.1| alanyl-tRNA synthetase-like protein [Clostridium sticklandii DSM
           519]
 gi|308826107|emb|CBH22145.1| Alanyl-tRNA synthetase related protein [Clostridium sticklandii]
          Length = 402

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 20/260 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           ++V D+T FY E GGQ  D     G+   + + DV++K +GI V+H + E   L     +
Sbjct: 47  KIVLDETIFYPEGGGQPSDR----GEIEEIPVFDVKEK-DGI-VYHYVNE---LPKNSKV 97

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      HS  H L   +  + G   +  G  I    +  D+ + K +T   
Sbjct: 98  KSKIDFNRRFDFMQQHSGEHALSGVILKLFGG--ANKGFHIGEQFVTIDI-NIKDMTEEM 154

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L   E+  N  I +N  V   + + E   A      +  +  + +RVVS+     G    
Sbjct: 155 LIEAENETNRYIFENQKVDQIVTDTEGLKAYPIRKEITAE--EDIRVVSM-----GEADC 207

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             C GTHV + GE+ ++ I+   S + G+ RI  + G RA +    +++ +KSL   L  
Sbjct: 208 CACCGTHVRNLGEVGIIKIIKAESYK-GMTRISFLCGYRALNDYKEKNDIIKSLKKELSS 266

Query: 752 SQGNVVGRVEEIWEEYRKLQ 771
            +  ++ +V++  E+   L+
Sbjct: 267 EESMILTKVQKQREDISALK 286


>gi|160902574|ref|YP_001568155.1| threonyl/alanyl tRNA synthetase SAD [Petrotoga mobilis SJ95]
 gi|160360218|gb|ABX31832.1| Threonyl/alanyl tRNA synthetase SAD [Petrotoga mobilis SJ95]
          Length = 369

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 32/261 (12%)

Query: 514 VFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
             +  PFY +  GGQLGD G       ++ I +V    E   + +  +  G         
Sbjct: 20  TIENNPFYPDGKGGQLGDRG-------KIDIAEVLGTTETGVILNKHLNPG------EYF 66

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ID + R  ++  H+  H+L  A   I     +   + +  S I  DG        + I
Sbjct: 67  YEIDKKRRFDIAQQHTGQHILSAAFERIGSLKTVSFKMGEEYSTIDLDG--------QNI 118

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
               L   ++  NDII++ + V     ++E A        L  K +  VR++ ++  D  
Sbjct: 119 EEELLNKAQELSNDIISKCIEVEEIYTDKERAQKYNLRKPLSDKISGEVRLIKIDDFD-- 176

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
               + CGG HV +TG I LL I +   ++  + R+  + G RA +    +D  LK+++S
Sbjct: 177 ---ISACGGFHVKNTGNINLLKITNTEKVKGNLTRVYFLAGLRAINDYSQKDSILKNISS 233

Query: 748 FLKVSQGNVVGRVEEIWEEYR 768
            L     ++  +VE +  E +
Sbjct: 234 ILTSGLYDLENKVESLLNENK 254


>gi|29345976|ref|NP_809479.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337870|gb|AAO75673.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 158

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+++    H+A HLL+  +    G   S+N   I     + D       T AE+++IED
Sbjct: 10  HNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILPTCPTDAEIQAIED 68

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN++I+QNLPV    M  E A      + L    ++ +R++ +     G + +  C G 
Sbjct: 69  KVNEVISQNLPVTVEFMTHEQAKGIVDLSKLPADASETLRIIRI-----GDYDACACIGL 123

Query: 698 HVSSTGEIMLLYIVS 712
           HVS+T E+    I+S
Sbjct: 124 HVSNTSEVGTFKIIS 138


>gi|320100428|ref|YP_004176020.1| Ala-tRNA(Pro) hydrolase [Desulfurococcus mucosus DSM 2162]
 gi|319752780|gb|ADV64538.1| Ala-tRNA(Pro) hydrolase [Desulfurococcus mucosus DSM 2162]
          Length = 238

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 13/215 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           + +++ + V EAV G KV    D+T F+  +GG   DTG  I   +R+++ +V    E  
Sbjct: 10  SYIKECDAVVEAVQGNKV--FLDRTVFHPRSGGVENDTGFIIAGDVRVRVLNVYYDKETG 67

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V H + +   +     + L +D+  R +L   H+A H+L   +    G+ ++  G  IT
Sbjct: 68  DVAHEVDDASSITIGSRVKLLLDWDRRYRLMRLHTAAHVLSAVMYMDHGALIT--GGNIT 125

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLG--T 670
           P+   +D    +  +S   +      N+I+A+N+ V    + RE+A+   G   L G   
Sbjct: 126 PE-YGYDDYSLQTFSSGVFEEAVRKANEIVARNIEVKVYWLPREEAMRIPGVVKLAGRMP 184

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              +++R+V +     GV   A  GG HV  T EI
Sbjct: 185 PNVEKLRIVEIP----GVDIQA-DGGPHVRHTSEI 214


>gi|50426755|ref|XP_461975.1| DEHA2G09856p [Debaryomyces hansenii CBS767]
 gi|49657645|emb|CAG90445.1| DEHA2G09856p [Debaryomyces hansenii]
          Length = 448

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 122/264 (46%), Gaps = 28/264 (10%)

Query: 518 TPFYAEAGGQLGDTGCAI-GDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           T  + E GGQ  DTG  I  +  RL +  V + +   + +  + ++ G       + L +
Sbjct: 67  TILFPEGGGQPFDTGSIILPNDNRLPVQMVLRNQLTALHIVPSPIDPG-----TKVTLQV 121

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D+  R  L   H+  HLL    S +L ++  +  S    + + + +   + ++   ++ I
Sbjct: 122 DWDRRIDLMQQHTGQHLL----SAVLDTYDLETLSWSLNEMINY-IELPRKVSDEIVEEI 176

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDGGVHSSA 692
              VND I + LP+  +++  ++  A    + +   Y+     +R+V +     G   S 
Sbjct: 177 NKKVNDYILEGLPI--KVVTPDEHGAEIDTSHIPDDYDTSKGIIRIVKI-----GELDSN 229

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            C GTH+SST +I  + ++ + ++R G  R+  I G R   +L+ Q   LK+      VS
Sbjct: 230 PCCGTHLSSTSQIQAISLLHQVNVRGGNSRLHFICGSRVYKYLIKQHNILKA------VS 283

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAK 776
            G +  ++EE+ E+   L L + K
Sbjct: 284 GGQLSCQIEEVAEKVGVLNLNYKK 307


>gi|163941229|ref|YP_001646113.1| threonyl/alanyl tRNA synthetase SAD [Bacillus weihenstephanensis
           KBAB4]
 gi|163863426|gb|ABY44485.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus weihenstephanensis
           KBAB4]
          Length = 411

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 28/255 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + +++V++    I   H I+E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----VPVSNVEEVNGEI--RHFIIEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDVTHSKPITSA 630
             ID++ R     +H   H   H LS     H  +   G  +  + +  D+  +  +++ 
Sbjct: 94  GKIDWERR----FDHMQQHTAQHILSAAFWDHFNIPTIGFHLGKETITIDL-ETANLSTE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVH 689
            ++      N I+ +N P+  + MN E+A A            + +RVV +E Y+  G  
Sbjct: 149 TVEKAAQIANQIVFENHPIRIKWMNLEEAKA--LPLRKEPTMTENIRVVIIENYDYNG-- 204

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLASF 748
               CGGTH   TGE+  + ++     + GI R+  I G R+   LMGQ ++ +K ++  
Sbjct: 205 ----CGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLK-LMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEI 763
           L  S  ++  +V ++
Sbjct: 259 LNSSDTDIPAKVAQL 273


>gi|253577580|ref|ZP_04854892.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843049|gb|EES71085.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 645

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 32/206 (15%)

Query: 521 YAEAGGQLGDTGCAIGDGIRL-----QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           YAE G  L D   +I  G+R      +I  V        V  A VE          ++T 
Sbjct: 15  YAE-GSSLEDVAASISSGLRKNALAGKINGVAVDLNTKLVDGAKVE----------IITG 63

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKS 634
           D Q   ++ + HS+ HL+  A+  + G+   + G   +  DG  +D+    P+   +L+ 
Sbjct: 64  DSQEGLEI-MRHSSAHLMAQAVKRLFGNKEVKLGIGPVIEDGFYYDMDLEHPLNPEDLQK 122

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA- 692
           IE  +  II +NLP+  R ++RE+A+A      + T+ +D  ++ +  E  +G V S   
Sbjct: 123 IEKEMERIIGENLPITRREVSREEALA------IYTELDDPYKLEIIRELPEGSVISIYD 176

Query: 693 ------LCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG+I +  ++S
Sbjct: 177 QGEFFDLCRGPHVPSTGKIKVFKLLS 202


>gi|327441832|dbj|BAK18197.1| predicted metal-dependent hydrolase [Solibacillus silvestris
           StLB046]
          Length = 391

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 170/384 (44%), Gaps = 32/384 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V + T FY   GGQ  DTG  I D   ++I DV+K  E I  H+   +   +  E+S  
Sbjct: 31  IVLNNTAFYPTGGGQPHDTGW-IND---VEIIDVEKINEEIR-HYTAADVSNISGEISGK 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L   +  R      H+  H+L  A   +    ++     +  + +  D+   + ++  +L
Sbjct: 86  L--HWSRRFDHMQQHAGQHILSAAFVELF--DMATVSFHLGTELVTIDLNVGE-VSEDQL 140

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSS 691
            ++E   N+II +N P+ T+ + +E+            K ++ +R+V + +Y+  G    
Sbjct: 141 AAVEKRANEIILENRPIETKWVTKEELAQYNLRK--DVKVDEDIRLVIIPDYDYNG---- 194

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH +STG++ L+ I++   ++  I R+  + G R    L  + + L  +A  L  
Sbjct: 195 --CGGTHPTSTGQVGLIKILATEKMKKQI-RVHFVCGNRVLQQLAMRKQVLSDVARQLSA 251

Query: 752 SQGNVVGRVEEIWEEYRKLQ--LIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           S+      + +  +  ++ +  L  A+   L+   ++L+   +A   F +  I     + 
Sbjct: 252 SEEEAANTLRKFTKAAKQTEKSLTEAQDNLLEFEAKELAKETVAAATFENRSI-----QS 306

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+ +   + ++    I +LV  +++K    L  V     ++  ++     +A  L  G G
Sbjct: 307 LQKLARFITQQNGEAIALLVANNEDK----LQFVAARGSEQTKSMKDISAAALPLINGKG 362

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GG   + Q GG     A+  I  +
Sbjct: 363 GGNDALVQGGGEKAITAEALIKAM 386


>gi|89094703|ref|ZP_01167639.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89081049|gb|EAR60285.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 639

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLMAMAVQELFPGAQVTIGPVIE-DGFYYDFAYERPFTPEDLEKIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           QNLPV   +M+R++  A+     +G KY   +     + ED   +S      LC G HV 
Sbjct: 130 QNLPVTRSLMSRDE--ATKMFDEMGEKYKVELLQAVPDSEDLSFYSQGDFIDLCRGPHVP 187

Query: 701 STGEI 705
           STG I
Sbjct: 188 STGHI 192


>gi|237719437|ref|ZP_04549918.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293370234|ref|ZP_06616794.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CMC 3f]
 gi|299146201|ref|ZP_07039269.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_23]
 gi|229451297|gb|EEO57088.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292634731|gb|EFF53260.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CMC 3f]
 gi|298516692|gb|EFI40573.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_23]
          Length = 158

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N   I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIED VN++I+QNLPV    M  E A      + L    ++ +R+V +     G 
Sbjct: 60  AEQIQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS T E+    I+S
Sbjct: 115 YDACACIGLHVSHTSEVGTFKIIS 138


>gi|212224048|ref|YP_002307284.1| alanyl-tRNA synthetase-related protein [Thermococcus onnurineus
           NA1]
 gi|212009005|gb|ACJ16387.1| alanyl-tRNA synthetase-related protein [Thermococcus onnurineus
           NA1]
          Length = 214

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 92/219 (42%), Gaps = 43/219 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K   G  V HA+ E G  +    + 
Sbjct: 27  LLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDDAG-NVWHAVAEPGKFKPGDEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAE 631
           L ID+  R +L   HSA HLL H L+ +LG  +    GS ++ +  R+D+ + + +   +
Sbjct: 82  LKIDWDYRYKLMRIHSAMHLLEHVLNEVLGEGNWELYGSGMSAEKGRYDILYPENVNQYK 141

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            K IE                               L  KY D    + + +E    ++ 
Sbjct: 142 EKIIE-------------------------------LFNKYVDEGGEMKIWWEGETRYTQ 170

Query: 692 AL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV    EI  L  +  SS+  G +R+E
Sbjct: 171 IRDFEVIPCGGTHVKDIKEIGHLKKLKRSSLGKGKQRLE 209


>gi|320583028|gb|EFW97244.1| Alanyl-tRNA synthetase, putative [Pichia angusta DL-1]
          Length = 384

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 26/266 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +G K EV  + T  + E GGQ  DTG        L++  V +   G+   H + +   L 
Sbjct: 28  NGNKYEVELEDTVLFPEGGGQPSDTGKISSGSDILEVESVIRA--GLKALHLVDKP--LE 83

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           T   + L++D++ R     +H   H   H LS +L        S    D + + +   + 
Sbjct: 84  TGAPVNLSVDWERR----FDHMQQHTGQHLLSAVLDKRDLPTLSWNMGDMINY-IEIPRK 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIM-NREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           +T  E + +   VN  I QNLP+   +  +RE     G            +R++ +    
Sbjct: 139 LTDTEREEVTKEVNSYITQNLPISVEVPPDREVDEVKGV-----------MRIIHI---- 183

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G + S+A CG TH+ ++G+I  + ++++ + + G  R+  I G R           L++L
Sbjct: 184 GDLDSNACCG-THLKNSGQIKGIVLLNQIAGKGGNSRLNFIAGDRIFKFAETSHSILRAL 242

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            S   V    +V +V ++    ++LQ
Sbjct: 243 NSATSVQSEQLVDKVNDLVTATKRLQ 268


>gi|206976173|ref|ZP_03237082.1| alanyl-tRNA synthetase family protein [Bacillus cereus H3081.97]
 gi|217961027|ref|YP_002339595.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH187]
 gi|206745627|gb|EDZ57025.1| alanyl-tRNA synthetase family protein [Bacillus cereus H3081.97]
 gi|217063211|gb|ACJ77461.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH187]
          Length = 400

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 179/407 (43%), Gaps = 63/407 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+  L TE  + 
Sbjct: 32  VVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFITEQ--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+   G  I    L  +  H++ 
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHL---GREIVTIDLETENLHTET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVE 682
           +  A   +     N+I+ +N P+    MN E      AA  L  +      + +RVV +E
Sbjct: 139 VEKAVQIA-----NNIVFENHPIRIEWMNLE------AAKTLPLRKEPTMIENIRVVMIE 187

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
            ++  G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + 
Sbjct: 188 NFDYNG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQI 240

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHI 800
           +K ++  L  S+ ++  +V          QL+ ++++ +  ++ ++   + A+ N +   
Sbjct: 241 MKDVSKQLNSSESDIPAKV---------AQLLTSQKENEKTIQTMTEKLLYAEANELLQH 291

Query: 801 ISEVDSKELKSVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD------RFNA 852
            +E+ +  L S M    + +Q  S +  ++   +E   +  ++  +D L       +   
Sbjct: 292 PTEIHAGILISKM-FTNRSMQEVSKLSAIITEQQEHAITYFVIENDDKLQCILACGKTVT 350

Query: 853 VDLARLSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +D+  L  K L    G GGG    A+ GG      D+ +  + S L+
Sbjct: 351 LDMNALLKKALPTIEGKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 397


>gi|77462699|ref|YP_352203.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides 2.4.1]
 gi|77387117|gb|ABA78302.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides 2.4.1]
          Length = 239

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 19/206 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MSL 571
           ++ D++ FYA  GGQ GD+G    DG R+ +     KA+G  +     E G L  E  S+
Sbjct: 28  ILVDRSIFYATGGGQPGDSGFLDWDGGRIDVA-TAVKADGGRIALVPAEAGPLPPEGASV 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             T+D++ R +    H+A HL    LS ++   V+  G  I  +  R D    +P   A+
Sbjct: 87  RQTLDWERRHRHMRVHTALHL----LSVVIPLPVT--GGQIGAERGRLDFDMPEP--PAD 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDGG 687
             ++E  +N +IA++L V    +  E+ +A  +     +++      RVR+V +     G
Sbjct: 139 PAALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRI---GQG 195

Query: 688 VHSSAL--CGGTHVSSTGEIMLLYIV 711
                L  CGGTHV+ TGEI  + +V
Sbjct: 196 AEQVDLQPCGGTHVARTGEIGRVLLV 221


>gi|193787605|dbj|BAG52811.1| unnamed protein product [Homo sapiens]
          Length = 543

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 159/368 (43%), Gaps = 60/368 (16%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K      +VV + T  + 
Sbjct: 129 KKVSTKRPPPAMDDLDFTTTVVSCCPA-----ELQTEGSNGKKEVLSGFQVVLEDTVLFP 183

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R  
Sbjct: 184 EGGGQPDDRG-TINDISVLRVTRRGEQADHF-------TQTPLDPGSQVLVRVDWERRFD 235

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKP-ITSAELKSIEDNVN 640
               HS  HL+     T +  H+ +  +     G  R  +    P +T+ ++ +IE +VN
Sbjct: 236 HMQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSVN 290

Query: 641 DIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           + I   LPV  R ++ +D  +   +   L   +   +RVV++E    GV S+ +C GTHV
Sbjct: 291 EKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIE----GVDSN-MCCGTHV 345

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  ++ ++ I+     +     +  ++G R    +       K+L + LK    + V  
Sbjct: 346 SNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEA 405

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-------------------KIADVNFMSHI 800
           V+++    + LQ    K  L L + DL+ H                   K  D  FM+ I
Sbjct: 406 VKKLQNSTKILQ----KNNLNL-LRDLAVHIAHSLRNSPDWGGVVILHRKEGDSEFMNII 460

Query: 801 ISEVDSKE 808
            +E+ S+E
Sbjct: 461 ANEIGSEE 468


>gi|222097079|ref|YP_002531136.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|229140236|ref|ZP_04268794.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST26]
 gi|221241137|gb|ACM13847.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|228643322|gb|EEK99595.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST26]
          Length = 411

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 179/407 (43%), Gaps = 63/407 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFITEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+   G  I    L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHL---GREIVTIDLETENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVE 682
           +  A   +     N+I+ +N P+    MN E      AA  L  +      + +RVV +E
Sbjct: 150 VEKAVQIA-----NNIVFENHPIRIEWMNLE------AAKTLPLRKEPTMIENIRVVMIE 198

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
            ++  G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + 
Sbjct: 199 NFDYNG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQI 251

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHI 800
           +K ++  L  S+ ++  +V          QL+ ++++ +  ++ ++   + A+ N +   
Sbjct: 252 MKDVSKQLNSSESDIPAKV---------AQLLTSQKENEKTIQTMTEKLLYAEANELLQH 302

Query: 801 ISEVDSKELKSVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD------RFNA 852
            +E+ +  L S M    + +Q  S +  ++   +E   +  ++  +D L       +   
Sbjct: 303 PTEIHAGILISKM-FTNRSMQEVSKLSAIITEQQEHAITYFVIENDDKLQCILACGKTVT 361

Query: 853 VDLARLSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +D+  L  K L    G GGG    A+ GG      D+ +  + S L+
Sbjct: 362 LDMNALLKKALPTIEGKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 408


>gi|291563576|emb|CBL42392.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [butyrate-producing bacterium
           SS3/4]
          Length = 389

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 150/389 (38%), Gaps = 75/389 (19%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV  DQT FY E GGQ  DTG  +G      + DV+    G  VH+      +  T   +
Sbjct: 29  EVALDQTAFYPEGGGQPYDTGI-LGGAHVTAVHDVK----GEIVHYTDAPLAVGET---V 80

Query: 572 VLTIDYQNRRQLSINHSATHL---LHHALSTI--LGSHVSQNGSCITPDGLRFDVTHSKP 626
              I++  R Q    HS  HL   L HA      +G H+      I  +GL         
Sbjct: 81  TGEINWDRRFQNMQGHSGEHLVSGLIHAKYGYDNVGFHMGTEEITIDLNGL--------- 131

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVS 680
           +   +L  IE   N II ++  +     + E+        L    Y  +      +R+VS
Sbjct: 132 LEWEDLMEIEKKANRIIWEDREIYAGFPSAEE--------LAHMDYRSKKELTGAIRIVS 183

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D     +  C GTHV +TGEI L+  ++    + G+ RI  + G+ A      + E
Sbjct: 184 IPGGD-----TCACCGTHVKTTGEIGLVKFLTMIHYKGGV-RISLLCGEAAVMDYEKKRE 237

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEY-----------RKLQLIHAKRKLQLNVEDLSCH 789
           +L+ ++  L    G     VE++  E            RKL  I+A +    N +     
Sbjct: 238 ELQKISVLLSAKAGKTADAVEKVKNELTMTQAKCSEMSRKLMKIYADQLNGGNSKICWIE 297

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
              D+  + H ++     +   ++ AL + +  G   ++G   E                
Sbjct: 298 DGLDMTELRHFVNFALEGKKGGIVLALSESVNGGFSYVLGSQSE---------------- 341

Query: 850 FNAVDLARLSAKVLG--GGGGGGRPHMAQ 876
               D+  LS ++ G   G GGG   MAQ
Sbjct: 342 ----DMRALSKELNGELSGRGGGSSQMAQ 366


>gi|13376886|ref|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [Homo sapiens]
 gi|13278807|gb|AAH04172.1| Alanyl-tRNA synthetase domain containing 1 [Homo sapiens]
 gi|17939656|gb|AAH19324.1| Alanyl-tRNA synthetase domain containing 1 [Homo sapiens]
 gi|119581308|gb|EAW60904.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_b [Homo
           sapiens]
 gi|190689425|gb|ACE86487.1| alanyl-tRNA synthetase domain containing 1 protein [synthetic
           construct]
 gi|190690787|gb|ACE87168.1| alanyl-tRNA synthetase domain containing 1 protein [synthetic
           construct]
          Length = 525

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 159/368 (43%), Gaps = 60/368 (16%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K      +VV + T  + 
Sbjct: 111 KKVSTKRPPPAMDDLDFTTTVVSCCPA-----ELQTEGSNGKKEVLSGFQVVLEDTVLFP 165

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R  
Sbjct: 166 EGGGQPDDRG-TINDISVLRVTRRGEQADHF-------TQTPLDPGSQVLVRVDWERRFD 217

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKP-ITSAELKSIEDNVN 640
               HS  HL+     T +  H+ +  +     G  R  +    P +T+ ++ +IE +VN
Sbjct: 218 HMQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSVN 272

Query: 641 DIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           + I   LPV  R ++ +D  +   +   L   +   +RVV++E    GV S+ +C GTHV
Sbjct: 273 EKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIE----GVDSN-MCCGTHV 327

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  ++ ++ I+     +     +  ++G R    +       K+L + LK    + V  
Sbjct: 328 SNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEA 387

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-------------------KIADVNFMSHI 800
           V+++    + LQ    K  L L + DL+ H                   K  D  FM+ I
Sbjct: 388 VKKLQNSTKILQ----KNNLNL-LRDLAVHIAHSLRNSPDWGGVVILHRKEGDSEFMNII 442

Query: 801 ISEVDSKE 808
            +E+ S+E
Sbjct: 443 ANEIGSEE 450


>gi|300870146|ref|YP_003785017.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687845|gb|ADK30516.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 643

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 18/137 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +  +     G  I  DG  +D    KP T  +L  IED +  I+ 
Sbjct: 70  LRHSTSHLMAQAVRRLYPNTQVTIGPAIK-DGFYYDFDAEKPFTEEDLPKIEDEMKKIVK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---------YEDGGVHSSALCG 695
           +N+PVV ++M +++AI     A      N+  +V  +E         YE G      LC 
Sbjct: 129 ENIPVVRKVMKKDEAIEYFKKA------NEPYKVEIIEGIDADTVSFYEQGDFID--LCR 180

Query: 696 GTHVSSTGEIMLLYIVS 712
           G HV STG I    ++S
Sbjct: 181 GPHVPSTGYIKSYKLMS 197


>gi|317055145|ref|YP_004103612.1| alanyl-tRNA synthetase, class IIc-like protein [Ruminococcus albus
           7]
 gi|315447414|gb|ADU20978.1| Alanyl-tRNA synthetase, class IIc-like protein [Ruminococcus albus
           7]
          Length = 384

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 32/274 (11%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T F+ E GGQ GD G    DG++  +TD  ++  G  +H   + R  L     +
Sbjct: 29  EVILDRTAFFPEGGGQAGDAGTL--DGVK--VTDTYER-NGEVIH---LCRSSLEVGKKV 80

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKP 626
              ID   R +   NHS  HLL   +  +     +G H+      +  DG+         
Sbjct: 81  YGEIDADIRIRRMQNHSGEHLLMGFIHNMTGYENVGFHMGSEEVLLDLDGV--------- 131

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           I++ +++  E   N+ +A ++P+     + E+       + L  +  + VR+V++E    
Sbjct: 132 ISAEDIRICEQKANEAVAADVPITISYPDGEELSCMEYRSKL--EMTENVRIVTIE---- 185

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G+   A C   H  STG I ++ ++S  S R G  R+  I G  A   +  + E   +++
Sbjct: 186 GIDRCACC-APHFPSTGSIGIIKVISAESNRGGT-RLHIICGLDALDLIRQRMESNAAIS 243

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
             L          VE++  E   L  QL   +R+
Sbjct: 244 RMLSAKPEKTADAVEKLLGENAALKKQLAENERR 277


>gi|224543391|ref|ZP_03683930.1| hypothetical protein CATMIT_02592 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523678|gb|EEF92783.1| hypothetical protein CATMIT_02592 [Catenibacterium mitsuokai DSM
           15897]
          Length = 365

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 33/277 (11%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            V   K E++ DQT F+ E GGQ  D G  I D   + + DVQ K + + +H+  V++  
Sbjct: 20  VVEVNKNEIILDQTLFFPEEGGQECDLG-TIND---IPVKDVQIKND-VIIHY--VKKHH 72

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRF 619
                ++   ID++ R     NH+  HLL   + ++ G      H++     +  DG   
Sbjct: 73  FNVGDTIEGHIDWKRRYSFMQNHTGEHLLSGIVHSLYGYDNVSFHLNSEEGQVEYDG--- 129

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+         ++  IE+ VN  I +N  +     +  ++I+  +   +  K    VR+V
Sbjct: 130 DI--------KDIDLIEEKVNQAIYENKEIHCFYPDDLESISYRSKKEIEGK----VRIV 177

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D        C   HV  TGE+ +  I+       G R I  + G+RA        
Sbjct: 178 EIKDYD-----ICACCAPHVKRTGELGIFKIIKVIHTTRGTRFI-FLFGERAYHRFKDDF 231

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + L+SL      +   +V +V +++EE   L++ +A+
Sbjct: 232 DHLESLYHLFSSNNQTLVKQVNKMYEEKTALEVKYAQ 268


>gi|254787772|ref|YP_003075201.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237685363|gb|ACR12627.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 242

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 24/221 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE--- 568
            +FD+T FY   GGQ GDTG     DG    +T+  +  E        +E     +E   
Sbjct: 33  ALFDKTIFYPLGGGQPGDTGTLEFPDGTSRNVTNTYRDREQ--TQQIWLELDTPLSEEHI 90

Query: 569 -MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
            +S + T+++  R +    H   H   H L  ++ + V+  G  I+ D  R D    +P 
Sbjct: 91  GLSALQTLNWDRRYR----HMQFHTCLHLLCALVDAPVT--GCNISEDKARLDFDLPEPS 144

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEY 683
            + E   I + +N +I +   V    +  E+  ++     +A +    YN R+R+V +E 
Sbjct: 145 VTKE--GITEELNALIQKAAAVTPASITPEELASNTDLIKSADVAPPAYNGRIRLVKIE- 201

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              G+ +   CGGTHV +T EI  +       +    RRIE
Sbjct: 202 ---GIDTQP-CGGTHVKTTSEINTVVCTKIKKVSKSNRRIE 238


>gi|30263570|ref|NP_845947.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Ames]
 gi|47528968|ref|YP_020317.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186419|ref|YP_029671.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Sterne]
 gi|65320898|ref|ZP_00393857.1| COG2872: Predicted metal-dependent hydrolases related to
           alanyl-tRNA synthetase HxxxH domain [Bacillus anthracis
           str. A2012]
 gi|254759251|ref|ZP_05211277.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Australia 94]
 gi|30258205|gb|AAP27433.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Ames]
 gi|47504116|gb|AAT32792.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180346|gb|AAT55722.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Sterne]
          Length = 411

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 174/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E +K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENKKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 408


>gi|187932858|ref|YP_001885945.1| dhha1 domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721011|gb|ACD22232.1| dhha1 domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 399

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 177/396 (44%), Gaps = 32/396 (8%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +K    + E V+E   G +  +V ++T F+   GGQ  D    +G    +++ +V +K  
Sbjct: 11  LKKFTAEIEQVKEV--GNEFHIVLNKTAFFPGGGGQRHD----LGKIDEIEVLNVYEKDN 64

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I+    +++R   R   ++  +ID+  RR   +NH   HL  H LS+      + N   
Sbjct: 65  LIY---HVLDRKPSRIH-NVKCSIDWL-RRLDGMNH---HLAQHVLSSCFFRLFNINTIA 116

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGT 670
           +        +  S  +T  +++S E   N+II ++L V       RE         L  T
Sbjct: 117 VHHGNEFSTIDFSSILTEEQVRSCEKYANNIIEKSLDVEFLTPTKRELKSMKLRRDLPDT 176

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
             N+++R+V ++  D        C G H  ST ++ L+ I      + G  RIE ITG +
Sbjct: 177 --NEQIRIVKIDDLDLNA-----CCGVHPKSTLDLRLIKIKKYEKHKKG-SRIEFITGSK 228

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786
           A +  + +D    S+  +L  ++   +  +E +  E + +   +    ++L+  ++    
Sbjct: 229 AVTDSLEKDLFANSMCKYLNCNEKEALNGIENLNLELKNVLNENKSMSIELSNYEIKEII 288

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +I ++N + ++ +    K + +++  + +K     I L+ +  + K +++   +++
Sbjct: 289 EKSAQINNINIIKYVYNNKTLKFVNTIVSQITEK--DNKIALIALVNDDKINLIFSCSKN 346

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +   N  +L +  A VL  G GGG   +AQ  G N
Sbjct: 347 -IKNVNMNELLK-DAIVLIDGRGGGNQTLAQGAGKN 380


>gi|167640567|ref|ZP_02398829.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0193]
 gi|170708135|ref|ZP_02898582.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0389]
 gi|177652509|ref|ZP_02934976.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0174]
 gi|190564654|ref|ZP_03017575.1| alanyl-tRNA synthetase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229600113|ref|YP_002867814.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0248]
 gi|254738662|ref|ZP_05196365.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|167511435|gb|EDR86819.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0193]
 gi|170126943|gb|EDS95823.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0389]
 gi|172082183|gb|EDT67250.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0174]
 gi|190563971|gb|EDV17935.1| alanyl-tRNA synthetase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229264521|gb|ACQ46158.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0248]
          Length = 400

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 174/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 32  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 139

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 140 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 192

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 193 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 244

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E +K      ++ L     +L     KI     +S +
Sbjct: 245 SKQLNSSEADIPAKVAQLLTSQKENKKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 304

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 305 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 361

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 362 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 397


>gi|196034210|ref|ZP_03101620.1| alanyl-tRNA synthetase family protein [Bacillus cereus W]
 gi|195993284|gb|EDX57242.1| alanyl-tRNA synthetase family protein [Bacillus cereus W]
          Length = 400

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 173/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 32  VILNETAFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 139

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 140 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 192

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 193 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 244

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 245 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 304

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 305 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 361

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 362 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 397


>gi|301629969|ref|XP_002944104.1| PREDICTED: threonyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 841

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPQAQVTIGPVIE-NGFYYDFSYQRPFTPEDLVAIEKRMTELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PVV R++ R++A+       LG  Y   + + S+        Y +GG     LC G 
Sbjct: 130 KDEPVVRRVLPRDEAVTYFKG--LGEHYKAEI-IASIPRNEDVSLYREGGFED--LCRGP 184

Query: 698 HVSSTGEI 705
           HV STG++
Sbjct: 185 HVPSTGKL 192


>gi|228916251|ref|ZP_04079821.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928672|ref|ZP_04091708.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123139|ref|ZP_04252346.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 95/8201]
 gi|228660433|gb|EEL16066.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 95/8201]
 gi|228830991|gb|EEM76592.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843449|gb|EEM88527.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 411

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 173/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETAFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 408


>gi|319763197|ref|YP_004127134.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|330825391|ref|YP_004388694.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|317117758|gb|ADV00247.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|329310763|gb|AEB85178.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 639

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKRMMELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PVV R++ R++A+A      LG  Y   + + S+        Y +GG     LC G 
Sbjct: 130 KDEPVVRRVLPRDEAVAYFKG--LGEHYKAEI-IASIPSNEDVSLYREGGFED--LCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++    ++
Sbjct: 185 HVPSTGKLKFFKLM 198


>gi|152975999|ref|YP_001375516.1| threonyl/alanyl tRNA synthetase SAD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024751|gb|ABS22521.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cytotoxicus NVH
           391-98]
          Length = 414

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 174/400 (43%), Gaps = 47/400 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSL 571
           V   +T FY   GGQ  D    IG    + +T+V++   E   + H I E      E+ +
Sbjct: 46  VTLTETAFYPTGGGQPHD----IGTLNNVSVTNVEEINGE---IRHFISEE---LHEVEV 95

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDVTHSKPITS 629
           +  ID+ NRR    +H   H   H LS     H  +   G  +  + +  D+    P  S
Sbjct: 96  IGKIDW-NRR---FDHMQQHAAQHILSAAFWDHFNIPTIGFHLGAETVTIDL--DTPTLS 149

Query: 630 AELKSIEDNV-NDIIAQNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRVVSVE-YED 685
           AE  +    + N I+ +N P+  + MN E+A  +      LL     + +RVV +E ++ 
Sbjct: 150 AETATEALRIANQIVLENHPIHIKWMNLEEAKQLPLRKEPLL----YENIRVVIIENFDY 205

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  ++I+     + GI R+  I G RA   +  Q + +K +
Sbjct: 206 NG------CGGTHPKYTGEVGPIHIIGWERNKGGI-RLSFIAGWRAIKLMGHQQQIIKEV 258

Query: 746 ASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMS 798
           +  L   + ++  +V ++     E  ++LQ++  K  L +   DL   + AD +    +S
Sbjct: 259 SKQLNSGENDIPRKVHQLITSQKESEKELQVMREKL-LVIEANDL-LQEAADTHVGMLIS 316

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
              S    +E+  +   + ++ ++ I   V  +++K   +L       +   N +  A  
Sbjct: 317 KAFSNRSMQEIAKLSAIITEQNENTITYFVTENEDKLQCILACGKSINISMNNMLKDALP 376

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + +    G GGG P  A+ GG      +Q +  +   LK+
Sbjct: 377 TIE----GKGGGNPKSARGGGKALISGEQFLQQLVQALKE 412


>gi|222112295|ref|YP_002554559.1| threonyl/alanyl tRNA synthetase sad [Acidovorax ebreus TPSY]
 gi|221731739|gb|ACM34559.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax ebreus TPSY]
          Length = 250

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 77/281 (27%), Positives = 111/281 (39%), Gaps = 56/281 (19%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +DL R   +++E                 S+IV A+  +G             VV D+T 
Sbjct: 3   HDLFRADSYLRE----------------CSAIVTALTPEGG------------VVLDRTV 34

Query: 520 FYAEAGGQLGDTGCAI-GDGIRLQITDVQ--KKAEGI----FVHHAIVERGI-LRTEMSL 571
           FY   GGQ GD G  +  DG  L I D +  K AEG      VH     + + L    ++
Sbjct: 35  FYPLGGGQAGDAGVLLRPDGSALAIADTRKGKDAEGRPTADIVHVPAPGQALGLAVGDAV 94

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R +L   H+ THLL H ++  +      NG  ITPD  R D      +    
Sbjct: 95  TARIDWERRHRLMRFHTTTHLLCHIVAQPV------NGCSITPDYARLDFHMDGALDKDA 148

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL---------GTKYNDRVRVVSVE 682
           L +    +  ++AQ+  V    ++  DA       L+         GT     VRV    
Sbjct: 149 LTAA---IARLVAQDHAVTIGAIS--DAALDANPQLVKSMSVQPPRGTGTVRTVRVGGAC 203

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             D        CGGTHV+ TGEI  + +       A  RR+
Sbjct: 204 DGDAAQIDLQPCGGTHVARTGEIGAVVVTKIEKKGAMSRRV 244


>gi|242398217|ref|YP_002993641.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
 gi|242264610|gb|ACS89292.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
          Length = 213

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 91/214 (42%), Gaps = 33/214 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ +QT FY   GGQ  DTG   G    +++ DV K  E   + H +    + R    + 
Sbjct: 27  LLLNQTIFYPTGGGQPHDTGTING----VKVLDVYKDEEE-NIWHVVENPEMFRVGDEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAE 631
           L +D+  R +L   H+A HLL H L  +LG    + +GS + P+  R+D+ + + I   +
Sbjct: 82  LKLDWDRRYKLMRIHTAMHLLDHILYEVLGKGTWEPHGSGMNPEKGRYDIRYPENINQHK 141

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            K IE                + NR  D          G K   ++R   +         
Sbjct: 142 EKIIE----------------LFNRYVDEGGEVKVWWEGKKRLTQIRDFEI--------- 176

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              CGGTHV    EI  L  +  SSI  G +RIE
Sbjct: 177 -LPCGGTHVKDIKEIGHLKKLKRSSIGKGAQRIE 209


>gi|168014116|ref|XP_001759601.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689140|gb|EDQ75513.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 270

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 115/252 (45%), Gaps = 39/252 (15%)

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDV 546
           ++IV  ++ +GE         ++ VV DQT  + + GGQ  DTG   A+   I+  +TDV
Sbjct: 32  NAIVAGVITEGE---------RLAVVLDQTILHPQGGGQPFDTGSIEAVDGTIKFCVTDV 82

Query: 547 QKKAEGIFVHHA------IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + K+ G+  H+       ++E         + +++D   R   S  HSA HLL   +S I
Sbjct: 83  RTKS-GVVYHYGNYHENRVMEATGFEPGHEVKISVDGARRTLNSRLHSAGHLLDACMSNI 141

Query: 601 -LGSHVSQNGSCITPDGLRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVTRIMNRE 657
            LGS     G    PDG   +   + P +  E K  ++E   N +IA    V   +    
Sbjct: 142 GLGSLEPGKGYHF-PDGPFVEYKGTIPSSDLENKRDALESEANHLIALGGQVRATV---- 196

Query: 658 DAIASGAAALLGTKYNDRV------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            A  S AAAL G +  D +      R++ +     G +    CGGTHV +  EI  +  V
Sbjct: 197 -ASYSEAAALCGGRLPDYIAKESCPRIICL-----GENLGCPCGGTHVLAISEIGEIK-V 249

Query: 712 SESSIRAGIRRI 723
           S+  +R G+ ++
Sbjct: 250 SQIRVRKGVTKV 261


>gi|228947237|ref|ZP_04109531.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812484|gb|EEM58811.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 411

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 173/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETAFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIESFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 408


>gi|254488453|ref|ZP_05101658.1| alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           GAI101]
 gi|214045322|gb|EEB85960.1| alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           GAI101]
          Length = 239

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 27/209 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI-TDVQKKAEGIFVHHA--IVERGILRTEM 569
           +V D T FY   GGQ GD+G  I DG R+ I T V+ + + I +  A  +   GI     
Sbjct: 28  IVLDSTIFYPTGGGQPGDSGWLIWDGQRMPIATTVKGQGDAIVLVPAEPLPLPGI---GT 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +  T+D+  R +    H   H + H LS ++   V+          L FD+    P   
Sbjct: 85  HVTQTLDWDRRHR----HMRVHTMLHLLSVVVPFGVTGGQISARQGRLDFDM----PEAP 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
            + + IE  +N+ +  +L V  R + + +  A+       A+   K  +RVR+V +    
Sbjct: 137 DDREGIETALNNFVMADLRVSDRWITQAELDAAPELVKTMAVKPPKSAERVRLVQI---- 192

Query: 686 GGVHSSAL----CGGTHVSSTGEIMLLYI 710
            G  SS +    CGGTH++ TGEI  L +
Sbjct: 193 -GDQSSWIDLQPCGGTHIARTGEIGALRL 220


>gi|229012797|ref|ZP_04169966.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides DSM 2048]
 gi|228748478|gb|EEL98334.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides DSM 2048]
          Length = 411

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 117/254 (46%), Gaps = 26/254 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + +++V++    I   H I+E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----IPVSNVEEVNGEI--RHFIIEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDVTHSKPITSA 630
             ID++ R     +H   H   H LS     H  +   G  +  + +  D+  +  +++ 
Sbjct: 94  GKIDWERR----FDHMQQHTAQHILSAAFWDHFNIPTIGFHLGKETITIDL-ETANLSTE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            ++      N I+ +N P+  + MN E+A A           N RV V+   Y+  G   
Sbjct: 149 TVEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRKEPTMTENIRV-VIIANYDYNG--- 204

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLASFL 749
              CGGTH   TGE+  + ++     + GI R+  I G R+   LMGQ ++ L  ++  L
Sbjct: 205 ---CGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLK-LMGQHQQILTDVSKQL 259

Query: 750 KVSQGNVVGRVEEI 763
             S+ ++  +V ++
Sbjct: 260 NSSETDIPAKVAQL 273


>gi|229191707|ref|ZP_04318685.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 10876]
 gi|228591753|gb|EEK49594.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 10876]
          Length = 411

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 34/258 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    IT D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETITID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A   +     N I+ +N P+    MN E+A              + +RVV +E Y+  
Sbjct: 151 EKAVQIA-----NKIVFENHPIRIEWMNLEEA--KTLPLRKEPTMTENIRVVIIENYDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEI 763
           +  L  S+ ++  +V ++
Sbjct: 256 SKQLNSSETDIPAKVAQL 273


>gi|261408878|ref|YP_003245119.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261285341|gb|ACX67312.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 645

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + D   +I  G+R     V  K +GI     +V+      + +L+  +       
Sbjct: 16  EAGSNIEDVAASISSGLRKNA--VAGKMDGI-----VVDLSTPLQDGALIEIVTQDTPEG 68

Query: 583 LSI-NHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           L +  HS  HLL  A   + G    + G   +  DG  +D+   +P+   +L+ IE  + 
Sbjct: 69  LEVMRHSTAHLLAQATKRLYGQKEVKLGVGPVIEDGFYYDMDLEEPLNPEDLQKIEKEME 128

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSAL 693
            II +NLP+V + ++R DA+       LG  Y   +        ++++ YE G      L
Sbjct: 129 RIIGENLPIVRKEVSRADALRIFGE--LGDPYKLELINALPEDSIITI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I +  +++
Sbjct: 184 CRGPHVPSTGKIKVFKLMN 202


>gi|42782693|ref|NP_979940.1| alanyl-tRNA synthetase family protein [Bacillus cereus ATCC 10987]
 gi|42738619|gb|AAS42548.1| alanyl-tRNA synthetase family protein [Bacillus cereus ATCC 10987]
          Length = 400

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 179/403 (44%), Gaps = 55/403 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+  L TE  + 
Sbjct: 32  VVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFITEQ--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGR--ETVTID-LETENLHTET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N+I+ +N P+    MN E+A              + +RVV +E ++ 
Sbjct: 139 VEKAVQIA-----NNIVFENHPIRIEWMNLEEA--KTLPLRKEPTMIENIRVVMIENFDY 191

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K +
Sbjct: 192 NG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQIMKDV 244

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEV 804
           +  L  S+ ++  +V          QL+ ++++ +  ++ ++   + A+ N +    +E+
Sbjct: 245 SKQLNSSESDISAKV---------AQLLTSQKENEKTIQTMTEKLLYAEANELLQHPTEI 295

Query: 805 DSKELKSVMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLD------RFNAVDLA 856
            +  L S M    + +Q  S +  ++   +E   +  ++  +D L       +   +D+ 
Sbjct: 296 HAGILISKM-FTNRSMQEVSKLSAIITEQQEHAITYFVIENDDKLQCILACGKTVTLDMN 354

Query: 857 RLSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            L  K L    G GGG    A+ GG      D+ +  + S L+
Sbjct: 355 ALLKKALPTIEGKGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 397


>gi|297273145|ref|XP_001112499.2| PREDICTED: alanyl-tRNA editing protein Aarsd1-like isoform 2
           [Macaca mulatta]
          Length = 585

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 164/388 (42%), Gaps = 60/388 (15%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQKV----EVVFDQTPFYAE 523
           +KV  ++PP     +D T  V S   A     E+  E  +G+KV     VV + T  + E
Sbjct: 172 QKVSTKRPPPAMDDLDFTTTVVSCRPA-----ELQTEGSNGKKVLSGFHVVLEDTLLFPE 226

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R   
Sbjct: 227 GGGQPDDHG-TINDISVLRVTRRGEQADHF-------TQTPLDPGSQVLVRVDWERRFDH 278

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKP-ITSAELKSIEDNVND 641
              HS  HL+     T +  H+ +  +     G  R  +    P +T+ ++ +IE +VN+
Sbjct: 279 MQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAIELDTPSMTTEQVAAIEQSVNE 333

Query: 642 IIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I   LPV  R ++ +D  +       L   +   VRVVS++  D     S +C GTHVS
Sbjct: 334 KIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPVRVVSIKGVD-----SNMCCGTHVS 388

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +  ++ ++ I+     +     +  + G R    +       K+L + LK    + V  V
Sbjct: 389 NLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAV 448

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCH-------------------KIADVNFMSHII 801
           +++    + LQ    K  L L + DL+ H                   K  D  FM+ I 
Sbjct: 449 KKLQNSTKILQ----KNNLNL-LRDLAVHIAHSLRNSPDWGGVVVLHRKEGDSEFMNIIA 503

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +E+ S+E    +    +K  +G+ +L G
Sbjct: 504 NEIGSEETLLFLTVGDEK-GAGLFLLAG 530


>gi|197303753|ref|ZP_03168790.1| hypothetical protein RUMLAC_02483 [Ruminococcus lactaris ATCC
           29176]
 gi|197297273|gb|EDY31836.1| hypothetical protein RUMLAC_02483 [Ruminococcus lactaris ATCC
           29176]
          Length = 397

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 161/370 (43%), Gaps = 38/370 (10%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E+V DQT F+ E GGQ  DTG  +GD    ++ DVQ++ EG  +H    E   L     +
Sbjct: 40  EIVLDQTAFFPEGGGQYADTG-YLGDA---KVLDVQEQ-EGQILHRTDQE---LPVGEKV 91

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D++ R      H+  H++   +    G      G  +  +    D +   P+   +
Sbjct: 92  TGQLDWELRFMKMQQHTGEHIVSGIVHERYG--YENVGFHLGNEDCTMDFSGEIPVE--D 147

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE   N  + +NL +     ++E+       + +  +   +VRVV V   D     +
Sbjct: 148 LQEIEFRANQAVWENLKIQILYPSKEEEKEMTYRSKI--EITGQVRVVIVPGYD-----A 200

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             C   HV  TGEI L+ +V     + G+ R+  + G RA +    + ++ K +++ L  
Sbjct: 201 CACCAPHVDFTGEIGLIKLVGMQRYKGGV-RVTMLCGGRAMADYALKQKQAKEISAMLCA 259

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISE-VDSKE 808
            +  +   V  + +E  + +   A+++ +L    + C   +I +   +  I  E +    
Sbjct: 260 KENELTDAVAHLQKELAEKKTELAEKEQEL----IRCKAEQIPESEQIVCIFPEGIQGDS 315

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG--G 866
           L+ +M+A+ +K +    +  G   +      ++ + D       VD+  ++ ++     G
Sbjct: 316 LRILMNAVLEKNRKLCAVFSG--NDAAGYRYVIGSRD-------VDVRNMAKELNAAFEG 366

Query: 867 GGGGRPHMAQ 876
            GGGRP M Q
Sbjct: 367 RGGGRPEMVQ 376


>gi|219850409|ref|YP_002464842.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aggregans DSM
           9485]
 gi|219544668|gb|ACL26406.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aggregans DSM
           9485]
          Length = 408

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 163/388 (42%), Gaps = 47/388 (12%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILR 566
           +  +  D++ FY E GGQ  D G  + D     R  + DVQ    G+  H    +  +  
Sbjct: 30  RPALALDRSAFYPEGGGQPADHGW-LTDADSRQRWAVQDVQSD-NGVVWHIMSDDEPLPT 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDV 621
              S++  ID+  R      H   H+L  A      +  +  H+S+    I       D+
Sbjct: 88  AGNSVIGQIDWTRRFDHMQQHCGQHILTAAFIATCNAPTVSFHLSERSVTI-------DL 140

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
             S  +   + ++ +   N  I QNLP+  R +   +   +          N++VRVVS+
Sbjct: 141 AIST-LNDEQAQAAKAWANTAIWQNLPIQARFVTPTEL--AHIPLRKPPTVNEQVRVVSI 197

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G +  SA CGGTH + +GE+  + I+  S  R G+ R+E + G R  + L  +D  
Sbjct: 198 ----GDIDHSA-CGGTHPARSGEVGAIAILGWSRQR-GMIRVEFVCGGRVIAALHERDRA 251

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQ--------LNVEDLSCHKI 791
            +  A+ L V    +   +  + E  + LQ  L   +R+L              +   +I
Sbjct: 252 ARGAAAVLSVGWTELPQAIARLQETQQALQRELTQTQRELDALRATQWYTQTPPVDGRRI 311

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             V   +  I     + L+S+   +  ++  GI ++ G ++     V IVV        +
Sbjct: 312 VTVTLPTASI-----ERLRSIAGFI-AELPGGIAIVAGGTER----VQIVVACAADTGAD 361

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           A ++      VLGG GGG + H+AQ GG
Sbjct: 362 AREILAAGMSVLGGRGGG-QMHLAQGGG 388


>gi|288958139|ref|YP_003448480.1| threonyl/alanyl tRNA synthetase SAD [Azospirillum sp. B510]
 gi|288910447|dbj|BAI71936.1| threonyl/alanyl tRNA synthetase SAD [Azospirillum sp. B510]
          Length = 235

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 29/204 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI--FVHHAIVERGILRTEMS 570
           +  D+T FY   GGQ GD+G    DG  ++I D  K   G    +H     + +     +
Sbjct: 26  IRLDRTVFYPTGGGQPGDSGALRFDGFTVRIKDTVKGDAGPDDVIHVPEEGQELPDPGTA 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID++ R +    H+A HLL    + + G   S  G  I  D  R D   + P  S 
Sbjct: 86  VEAEIDWERRYRHMRMHTALHLL---CAVVPG---SVTGGQIGADKSRLDF--NVPAESL 137

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +   + + VN +IA + PV TR ++ E+  A            + VR +SV+   GG   
Sbjct: 138 DKDVLAEAVNRLIAADTPVGTRWISDEEMAAQ----------PELVRTMSVKPPAGGGRV 187

Query: 691 SAL---------CGGTHVSSTGEI 705
             L         CGGTHV+ TGEI
Sbjct: 188 RLLNVEGVDLQPCGGTHVARTGEI 211


>gi|295704343|ref|YP_003597418.1| Threonyl and Alanyl tRNA synthetase domain-containing protein
           [Bacillus megaterium DSM 319]
 gi|294802002|gb|ADF39068.1| Threonyl and Alanyl tRNA synthetase domain protein [Bacillus
           megaterium DSM 319]
          Length = 391

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 173/420 (41%), Gaps = 76/420 (18%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E++E         +    T FY E GGQ  D G   G    + + DV +  E   V+H
Sbjct: 16  ETEVIETRSLSNGYALTLKHTAFYPEGGGQPSDYGNIAG----IDVKDVYE--ENGEVYH 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH---------HALSTILGSHVSQN 608
            +     L  + ++   ID+  R      HS  HLL          H +S  LGS     
Sbjct: 70  IV---DTLPEQTNVTCEIDWHRRFDHMQQHSGQHLLSALLIDTYDIHTVSFHLGS----- 121

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                 + +  D+   + ++  +L  IE  VND I  N  + T  + +ED + + A   +
Sbjct: 122 ------EAVSIDLNVPQ-LSHEQLLHIEKVVNDAIYSNRHIKTYEVTKED-LHTLALRKV 173

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
               ++ VR+V +E    G+  SA C GTHV+  GE+ L+ +      R G  R+    G
Sbjct: 174 PDLEDEVVRIVEIE----GIDVSACC-GTHVNQIGELGLIKLTKTEKQR-GNTRLFFKCG 227

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            RA +      E +  L++    S+  VV R++++  E         +++LQ  +E+L  
Sbjct: 228 MRALADYQQSQEIVAELSNKFSTSRELVVERIKKLETE---------QKELQKQLEELKN 278

Query: 789 HKIADVNFMSHIISEVDSKELKSVM------------DALQKKI--QSGIIMLVGISKEK 834
              A      ++ SE+++K+  S +             AL K++    G  +L   S ++
Sbjct: 279 ENAA------YLASELEAKKEGSFLCHHFENRTLKDGQALTKQLLQTPGTTLLFAFSSDQ 332

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K  VL      L    + V    L  ++L    G GGG P  AQ+   +    +  ++ V
Sbjct: 333 K--VL------LAHSGSEVKCGELYKELLPLYDGKGGGGPKQAQASFSSSENMNAFLSAV 384


>gi|121596140|ref|YP_988036.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Acidovorax sp. JS42]
 gi|120608220|gb|ABM43960.1| Ala-tRNA(Pro) hydrolase [Acidovorax sp. JS42]
          Length = 250

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 95/228 (41%), Gaps = 28/228 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQ--KKAEGI----FVHHAIVERGI- 564
           VV D+T FY   GGQ GD G  +  DG  L I D +  K AEG      VH     + + 
Sbjct: 28  VVLDRTVFYPLGGGQAGDAGVLLRPDGTALAIADTRKGKDAEGRPTADIVHVPAPGQALG 87

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    ++   ID++ R +L   H+ THLL H ++  +      NG  ITPD  R D    
Sbjct: 88  LAVGDAVTARIDWERRHRLMRFHTTTHLLCHIVAQPV------NGCSITPDYARLDFHMD 141

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL---------GTKYNDR 675
             +    L +    +  ++AQ+  V    ++  DA       L+         GT     
Sbjct: 142 GALDKDALTAA---IARLVAQDHAVTIGAIS--DAALDANPQLVKSMSVQPPRGTGTVRT 196

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           VRV      D        CGGTHV+ TGEI  + +       A  RR+
Sbjct: 197 VRVGGACDGDAAQIDLQPCGGTHVARTGEIGAVVVTKIEKKGAMSRRV 244


>gi|165871092|ref|ZP_02215743.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0488]
 gi|167636463|ref|ZP_02394761.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0442]
 gi|170688416|ref|ZP_02879624.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0465]
 gi|218904751|ref|YP_002452585.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH820]
 gi|227813545|ref|YP_002813554.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str. CDC
           684]
 gi|254726044|ref|ZP_05187826.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A1055]
 gi|164713303|gb|EDR18829.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0488]
 gi|167528122|gb|EDR90914.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0442]
 gi|170667586|gb|EDT18341.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0465]
 gi|218539367|gb|ACK91765.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH820]
 gi|227004254|gb|ACP13997.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str. CDC
           684]
          Length = 400

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 173/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 32  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 139

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 140 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 192

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 193 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 244

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 245 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 304

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 305 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 361

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 362 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 397


>gi|229071122|ref|ZP_04204348.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus F65185]
 gi|228712062|gb|EEL64011.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus F65185]
          Length = 411

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 176/402 (43%), Gaps = 53/402 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHTETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             A   +     N I+ +N P+    MN E+A             N RV ++   Y+  G
Sbjct: 151 EKAVQIA-----NKIVFENHPIRIEWMNLEEAKTLPLRKEPNMTENIRVFIIE-NYDYNG 204

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLA 746
                 CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K ++
Sbjct: 205 ------CGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVD 805
             L  S+ ++  +V          QL+ ++++ +  ++ ++   + A+ N +    +E+ 
Sbjct: 257 KQLNSSETDIPAKV---------AQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIH 307

Query: 806 SKEL--KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD------RFNAVDLAR 857
           +  L  K+  D   ++I + I  ++   +E   +  ++  +D L       +   +D+  
Sbjct: 308 AGLLISKAFTDRSMQEI-AKISAIITEQQEHAITYFVIENDDKLQCILACGKTVTLDMNA 366

Query: 858 LSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L    L    G GGG    A+ GG      D+ +  + S L+
Sbjct: 367 LLKDALPAIEGKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|323484730|ref|ZP_08090089.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14163]
 gi|323401967|gb|EGA94306.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14163]
          Length = 384

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 30/260 (11%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T FY E GGQ  DTG     GI  ++ DV ++ E + +H+   E   L+   ++
Sbjct: 29  EVILDRTAFYPEGGGQPSDTGTL---GI-ARVLDVHERGEEV-IHYTDQE---LQEGQTV 80

Query: 572 VLTIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ID+ NR      HS  H    L+H       +G H+      I  +G+         
Sbjct: 81  TGAIDWDNRFSNMQQHSGEHIVSGLIHGRYGYDNVGFHMGHEEMTIDLNGI--------- 131

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  EL  IE   N+I+  N  +     + E+       +    + + RVR+V V   D 
Sbjct: 132 LTWEELMEIEKEANEIVFANRQIKATYPSEEELQKLDYRS--KKELSGRVRIVEVPGAD- 188

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C GTHV  TGEI  +  +S    + G+ RI  + G +A      + ++  +++
Sbjct: 189 ----CCACCGTHVEYTGEIGAVKFLSMIHYKGGV-RISMLCGAKAMEDYRRKTDQTAAIS 243

Query: 747 SFLKVSQGNVVGRVEEIWEE 766
           + L      +   VE +  E
Sbjct: 244 NLLSAKPDRLKEAVERLKNE 263


>gi|159044856|ref|YP_001533650.1| aminoacyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|157912616|gb|ABV94049.1| aminoacyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 239

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 13/197 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V DQT FYA  GGQ GD G    DG  ++I    K   G   H       +      L 
Sbjct: 28  IVTDQTVFYATGGGQPGDAGRIAWDGGEIEIATAVKLDTGAIAHVPAEAASLPHVGAGLR 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L++D+  R +    H+A HL    LS ++   V+          L FD+    P    + 
Sbjct: 88  LSLDWARRHRHMRIHTALHL----LSVVIPLPVTGGAVSAQKGRLDFDM----PDAPEDR 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGV 688
            ++E  +  +I ++LPV    +   + +A        A+     + +VR+V +  E    
Sbjct: 140 DALEAQLATLIERDLPVADEWITEAELLAKPELVKTMAVKPPLVSGQVRLVRIG-EGAET 198

Query: 689 HSSALCGGTHVSSTGEI 705
                CGGTHV+ TGEI
Sbjct: 199 VDLQPCGGTHVARTGEI 215


>gi|260770348|ref|ZP_05879281.1| alanyl-tRNA synthetase domain protein [Vibrio furnissii CIP 102972]
 gi|260615686|gb|EEX40872.1| alanyl-tRNA synthetase domain protein [Vibrio furnissii CIP 102972]
          Length = 212

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 32/219 (14%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           + G +VE+  ++T FYAE+GGQ  DTG   G      IT ++ + +G  + + + +    
Sbjct: 22  LEGDQVEL--EETIFYAESGGQESDTGTIAG------ITVLKAEKQGRTIRYTLEQTPAF 73

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + + ID+  R QL   H A  L+         S+V + G+ I+ D  R D    +
Sbjct: 74  SVGEEVWVKIDWPRRYQLMKLHFAAELVLELFYQQF-SNVEKIGAHISQDKSRIDFYWPE 132

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            I    L S+ +  N +IAQ+ P+++   +                  +  R   VE   
Sbjct: 133 SIAPL-LPSVTEQANHLIAQDTPILSAFSDE----------------AEERRYWQVE--- 172

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               +   CGGTH+ STGE+  + +    +I  G  R+E
Sbjct: 173 --GFAKVPCGGTHLKSTGEVGPIRL-KRKNIGGGKERVE 208


>gi|254686189|ref|ZP_05150048.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254744780|ref|ZP_05202458.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Kruger B]
 gi|254752980|ref|ZP_05205016.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Vollum]
          Length = 411

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 173/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 408


>gi|332109489|gb|EGJ10412.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  +  +G  +D  + +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKQLFPEAQVTIGPTVE-NGFYYDFAYKRPFTPEDLAAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N PVV R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KNEPVVRRVLPRDEAVAYFKG--LGEDYKAEIIGSIPSNEDVSLYREGDFEDLCRGPHVP 187

Query: 701 STGEI 705
           STG +
Sbjct: 188 STGRL 192


>gi|218662981|ref|ZP_03518911.1| alanyl-tRNA synthetase protein [Rhizobium etli IE4771]
          Length = 245

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 17/205 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMS 570
           +  DQT FYA +GGQ GDTG     DG ++ +   +  A + I +H  +          +
Sbjct: 29  IELDQTCFYAASGGQPGDTGQLERADGSKIALGQTKHGASKDIIIHVPLDNEPQPEIGET 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL +D+  R +L   H+A HLL    S  I G+ V +  S       R D   S+ I  
Sbjct: 89  LVLHVDWPRRYRLMRMHTACHLLSVICSYPITGAAVGEEES-------RIDFDMSETIDK 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDG 686
            E+ +    + ++I QN PV  + +  +D +A+    +        +   RV  V   + 
Sbjct: 142 DEVTA---RLMELIGQNHPVYLQWIT-DDELAANPDIVKSKNVRPPIGLGRVSLVCIGEN 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIV 711
               S  CGGTHVS T E+  ++I 
Sbjct: 198 SSIDSQPCGGTHVSETQEVGQIHIA 222


>gi|291614198|ref|YP_003524355.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584310|gb|ADE11968.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 637

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +S+P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLFPEAQVTIGPVIE-NGFYYDFAYSRPFTPEDLTAIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++LPV  +++ R++A+A   +  +G KY   +       +D  ++S      LC G HV 
Sbjct: 130 KDLPVTRKVLPRDEAVAYFKS--IGEKYKAEIIESIPADQDVSLYSEGDFTDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|229168340|ref|ZP_04296065.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH621]
 gi|228615166|gb|EEK72266.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH621]
          Length = 411

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 166/401 (41%), Gaps = 51/401 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G  + + + +V  +     + H IVE+  L  E  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNGIPV-INVEEVDGE-----IRHFIVEQ--LHME-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDVTHSKPITSA 630
             ID+  R     +H   H   H LS     H  +   G  +  + +  D+  +  +++ 
Sbjct: 94  GKIDWDRR----FDHMQQHTAQHILSAAFWDHFNIPTIGFHLGKETITIDL-ETANLSTE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            ++      N I+ +N P+  + MN E+A A           N RV V+   Y+  G   
Sbjct: 149 TVEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRKEPTMTENIRV-VIIANYDYNG--- 204

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLASFL 749
              CGGTH   TGE+  + I+     + GI R+  I G R+   LMGQ ++ +K ++  L
Sbjct: 205 ---CGGTHPKHTGEVGPIQILGWERNKGGI-RLTFIAGWRSLK-LMGQQQQIMKDVSKQL 259

Query: 750 KVSQGNVVGRVEEIWEEYR-----------KLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
             S  ++  +V ++    +           KL  + A   LQ + E++    +    F +
Sbjct: 260 NSSDTDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQS-EEIHAGTLISRAFTN 318

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             + EV      + + A+  + Q   I    I  E+K   ++   + +      +D+  L
Sbjct: 319 RSMQEV------AKLAAIITEQQEHAITYFVIENEEKLQCILACGKAV-----TLDMNTL 367

Query: 859 SAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
               L    G GGG    A+ GG      D+ +  + S L+
Sbjct: 368 LKDALPSIEGKGGGNKKNARGGGKAIMSGDEFLDQLVSSLQ 408


>gi|299139528|ref|ZP_07032702.1| Alanyl-tRNA synthetase, class IIc-like protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598456|gb|EFI54620.1| Alanyl-tRNA synthetase, class IIc-like protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 423

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 128/298 (42%), Gaps = 22/298 (7%)

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---- 535
           P ++ T  V+ I     ++ E  E+    Q  +V  D+T FY E GGQ  DTG  +    
Sbjct: 14  PALEFTATVADIRLDSHEKNEAGEKQ---QLWQVALDRTAFYPEGGGQPWDTGVLVAVSR 70

Query: 536 -GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + + +  V++   G   H+    R  L     +   +D   R      HS  HLL 
Sbjct: 71  SGATLEVAVERVEEDEAGEVWHYV---RKPLVEGTEITGRVDAARRMDHVQQHSGQHLLS 127

Query: 595 HA-LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            A LS +    VS +    T          S+ ++  EL+ +E   N ++  +  +  R 
Sbjct: 128 AAFLSELEAKTVSFHLGAETSSIDLVLREGSERLSEDELQRVETAANRLVFADRVLTPRW 187

Query: 654 MNR---EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++R   E+    G    L  +    +R+V ++    GV  +A CGGTHV+STG I  + +
Sbjct: 188 VSRGEAEEMYERGDLRKLPEREGP-MRIVEMQ----GVEFNA-CGGTHVASTGAIGGVML 241

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
                +R G  R+E + G RA          L  +A  L V  G+V GRV  + E+ +
Sbjct: 242 RRVEKVRQGW-RVEFVCGLRAVQAARKDFGLLAEVAGSLSVGAGDVPGRVASLLEDAK 298


>gi|119581310|gb|EAW60906.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_d [Homo
           sapiens]
          Length = 536

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 41/330 (12%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K      +VV + T  + 
Sbjct: 172 KKVSTKRPPPAMDDLDFTTTVVSCCPA-----ELQTEGSNGKKEVLSGFQVVLEDTVLFP 226

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R  
Sbjct: 227 EGGGQPDDRG-TINDISVLRVTRRGEQADHF-------TQTPLDPGSQVLVRVDWERRFD 278

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKP-ITSAELKSIEDNVN 640
               HS  HL+     T +  H+ +  +     G  R  +    P +T+ ++ +IE +VN
Sbjct: 279 HMQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSVN 333

Query: 641 DIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           + I   LPV  R ++ +D  +   +   L   +   +RVV++E    GV S+ +C GTHV
Sbjct: 334 EKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIE----GVDSN-MCCGTHV 388

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  ++ ++ I+     +     +  ++G R    +       K+L + LK    + V  
Sbjct: 389 SNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEA 448

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           V+++    + LQ    K  L L + DL+ H
Sbjct: 449 VKKLQNSTKILQ----KNNLNL-LRDLAVH 473


>gi|196038530|ref|ZP_03105839.1| alanyl-tRNA synthetase family protein [Bacillus cereus NVH0597-99]
 gi|196030938|gb|EDX69536.1| alanyl-tRNA synthetase family protein [Bacillus cereus NVH0597-99]
          Length = 400

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 171/396 (43%), Gaps = 41/396 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 32  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 139

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 140 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 192

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 193 G------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHII 801
             L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S + 
Sbjct: 246 KQLNSSESDIPAKVAQLLTSKKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +  
Sbjct: 306 TNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQYILACGKTVTLDMNA--LLKEALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 363 TIEGKGGGNKKS-ARGGGKALMSGDEFLNQLISSLQ 397


>gi|229104160|ref|ZP_04234832.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-28]
 gi|228679177|gb|EEL33382.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-28]
          Length = 411

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 30/256 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G      +T+V++    I   H I E+  L  E  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGTLNGT----LVTNVEEVNGEI--RHFIAEQ--LEAE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDV-THSKPITS 629
             I+++ R     +H   H   H LS     H  +   G  +  + +  D+ T + P  +
Sbjct: 94  GKINWERR----FDHMQQHAAQHILSAAFWDHFNIPTIGFHLGKETVTIDLETENLPAET 149

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGV 688
            E K+++   N+I+ +N P+  + MN E+A          T   + +RVV +E ++  G 
Sbjct: 150 IE-KAVQI-ANNIVFENHPIRIQWMNLEEA--KTLPLRKETTLTENIRVVIIENFDYNG- 204

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLAS 747
                CGGTH   TGE+ L+ +++    + GI R+  I G R    LMGQ ++ +K ++ 
Sbjct: 205 -----CGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDVSK 257

Query: 748 FLKVSQGNVVGRVEEI 763
            L  S+ ++  +V ++
Sbjct: 258 QLNSSETDIPAKVAQL 273


>gi|218131207|ref|ZP_03460011.1| hypothetical protein BACEGG_02813 [Bacteroides eggerthii DSM 20697]
 gi|217986599|gb|EEC52934.1| hypothetical protein BACEGG_02813 [Bacteroides eggerthii DSM 20697]
          Length = 155

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S +   I     + D   +   T
Sbjct: 1   MEQTIQLNEHNKQEYPPMHTCEHIINQTMIRLFGCGRSVSAH-IERKKSKLDYRLTACPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++K++E+ VN II Q+LPV T  + +E+A        L    ++ VRVV V     G 
Sbjct: 60  EEQIKNLENTVNQIIMQHLPVTTEFITQEEAKGRFDLKRLPEDASETVRVVKV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           +   LC GTHV++T EI    I+S
Sbjct: 115 YDECLCIGTHVANTSEIGTFKIIS 138


>gi|254172499|ref|ZP_04879174.1| alanyl-trna synthetase domain protein [Thermococcus sp. AM4]
 gi|214033428|gb|EEB74255.1| alanyl-trna synthetase domain protein [Thermococcus sp. AM4]
          Length = 213

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 34/214 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H + E    +    + 
Sbjct: 27  LLLDQTIFYPTGGGQPHDRGTING----IEVLDVYKDDEG-NVWHVVAEPEKFKPGDEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID+  R +L   HSA HLL H L+ +L       GS ++ +  R+D+ +         
Sbjct: 82  LKIDWDYRYKLMRIHSAMHLLEHVLNLVLPGKWELYGSGMSVEKGRYDILYP-------- 133

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHS 690
               +NVN    Q +    R+++       G   +   G K   ++R   V         
Sbjct: 134 ----ENVNQWKEQIIETFNRLVDE-----GGEMKIWWEGEKRLTQIRDFEV--------- 175

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              CGGTHV    EI  L     SS+  G +R+E
Sbjct: 176 -IPCGGTHVRDIKEIGHLKKFKRSSLGKGKQRLE 208


>gi|290953863|ref|ZP_06558484.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295312766|ref|ZP_06803503.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
          URFT1]
          Length = 61

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 1  MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
          M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK +++ 
Sbjct: 1  MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKRIFRV 60


>gi|94985303|ref|YP_604667.1| threonyl/alanyl tRNA synthetase, SAD [Deinococcus geothermalis DSM
           11300]
 gi|94555584|gb|ABF45498.1| Threonyl/alanyl tRNA synthetase, SAD [Deinococcus geothermalis DSM
           11300]
          Length = 399

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 143/386 (37%), Gaps = 59/386 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSL 571
           V  D + FY E GGQ GD G     G   ++TD +K K+ G+  H    E  +     S+
Sbjct: 27  VALDASAFYPEGGGQNGDVGVLRWRGGEARVTDTRKDKSSGVIWHEGEGE--LPPVGASI 84

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV--------SQNGSCITPDGLRFDVTH 623
              +D   R +    HSA HLL  A   +  +          +++   +T D    DV  
Sbjct: 85  RGEVDPVCRWRNMARHSAEHLLAQAFHRVNPAFAVAAVSLRNAESTIDLTGDPGEADVRA 144

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           ++ +    L   E  +  +      +    + RE             K    VR+V    
Sbjct: 145 AERLLRETLARTELTLETLTVPEEELYRYPLRRE------------AKVRGDVRLVIFRD 192

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            +G     + CGGTHV     +  + ++    IR G+ R+  + G+ A ++L       +
Sbjct: 193 AEGIPFDVSACGGTHVPCASMVAPVVVLRTERIRGGLTRVFFMAGEEASAYLADVYRDAR 252

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-------------DLSCHK 790
           +LA     S  ++ GRV  +  E   L+      + +L                 L    
Sbjct: 253 ALAQSFSASVSDLPGRVAALATERDMLKAEGTALRARLARLLADAAPLETVAGVPLRLLN 312

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           + D N +S  ++     E++  +        SG    VG  +E       V    LL+  
Sbjct: 313 LEDPNLLSDALAATPKGEVRVAL-------ASGGRCGVGSGRED------VSAGKLLE-- 357

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQ 876
                   +A  L GG GGGRP +AQ
Sbjct: 358 --------AALRLTGGKGGGRPALAQ 375


>gi|15965373|ref|NP_385726.1| hypothetical protein SMc01173 [Sinorhizobium meliloti 1021]
 gi|307308761|ref|ZP_07588457.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti BL225C]
 gi|307317234|ref|ZP_07596675.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti AK83]
 gi|15074553|emb|CAC46199.1| Probable alanyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|306897322|gb|EFN28067.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti AK83]
 gi|306900767|gb|EFN31378.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti BL225C]
          Length = 249

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 33/210 (15%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMSLV 572
            DQT FYA +GGQ GDTG     DG R+ I + +  A + + VH +     +      LV
Sbjct: 33  LDQTCFYATSGGQPGDTGFLEREDGSRIDIVETRHGANKDVIVHMSADGAPVPAVGEKLV 92

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHS---KPIT 628
           L ID+  R +L   H+A HLL       I G+ V +  S +      FD++ +     +T
Sbjct: 93  LHIDWPRRYRLMRMHTACHLLSVVCPFPITGAAVGEEESRVD-----FDMSETIDKDEVT 147

Query: 629 SAELKSIEDN--------VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  +K +E+N         ++ +A N P + +  N    +  G  +L+    N  +    
Sbjct: 148 AGLMKLVEENHPVYVQWITDEELAAN-PGIVKSKNVRPPMGLGRVSLVCIGENSSI---- 202

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
                     S  CGGTHVS T E+  ++I
Sbjct: 203 ---------DSQPCGGTHVSETQEVGAIHI 223


>gi|228934894|ref|ZP_04097725.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824794|gb|EEM70595.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 333

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 32/257 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    I    L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGKETVTI---DLETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEI 763
             L  S+ ++  +V ++
Sbjct: 257 KQLNSSESDIPAKVAQL 273


>gi|239831925|ref|ZP_04680254.1| Alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824192|gb|EEQ95760.1| Alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 247

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 20/206 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ DQT FYA +GGQ GD G     DG R++I   V  + +   +H     +        
Sbjct: 31  IILDQTNFYATSGGQPGDIGFFERADGSRIEIAATVTGENKNEIIHVPAEGQAAPAIGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           LVL +D+  R +L   H+A HL    LS +    ++  G+ +  D  R D     P  + 
Sbjct: 91  LVLHVDWPRRYKLMRMHTACHL----LSVVCPFPIT--GAAVGEDESRVDFDLPDPTYTK 144

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYE 684
           E   + + + + ++ N  V  R ++ E+ +A+    ++ +K         R+R+V +   
Sbjct: 145 EF--VTEKLMERVSANDAVAIRWISDEEFLAN--PDIVKSKNVRPPVGLGRIRLVLI--G 198

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYI 710
           + GV  S  CGGTHVS T E+  ++I
Sbjct: 199 ENGVVDSQPCGGTHVSETQEVGEIHI 224


>gi|149183677|ref|ZP_01862091.1| alanyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848625|gb|EDL62861.1| alanyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 73

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 5  SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
          + IR  FLEFF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +   
Sbjct: 7  AEIRRMFLEFFKEKGHGVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRIVNA 66

Query: 65 QKCVRA 70
          QK +R 
Sbjct: 67 QKSIRT 72


>gi|52141918|ref|YP_084911.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|301055110|ref|YP_003793321.1| alanine-tRNA ligase [Bacillus anthracis CI]
 gi|51975387|gb|AAU16937.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|300377279|gb|ADK06183.1| alanine-tRNA ligase [Bacillus cereus biovar anthracis str. CI]
          Length = 411

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 173/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 408


>gi|221638559|ref|YP_002524821.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides KD131]
 gi|221159340|gb|ACM00320.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides KD131]
          Length = 239

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 19/200 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MSL 571
           ++ D++ FYA  GGQ GD+G    +G R+ +     KA+G  +     E G L  E  S+
Sbjct: 28  ILVDRSIFYATGGGQPGDSGFLDWEGGRIDVA-TAVKADGGRIALVPAEAGPLPPEGASV 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             T+D++ R +    H+A HL    LS ++   V+  G  I  +  R D    +P   A+
Sbjct: 87  RQTLDWERRHRHMRVHTALHL----LSVVIPLPVT--GGQIGAERGRLDFDMPEP--PAD 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDGG 687
             ++E  +N +IA++L V    +  E+ +A  +     +++      RVR+V +     G
Sbjct: 139 PAALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRI---GQG 195

Query: 688 VHSSAL--CGGTHVSSTGEI 705
                L  CGGTHV+ TGEI
Sbjct: 196 AEQVDLQPCGGTHVARTGEI 215


>gi|315648987|ref|ZP_07902081.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315275668|gb|EFU39022.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 645

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 21/199 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + D   +I  G+R     V  K +GI     +V+      + +L+  +       
Sbjct: 16  EAGSSIEDVAASISSGLRKNA--VAGKLDGI-----VVDLSTPLQDGALIEIVTQDTPEG 68

Query: 583 LSI-NHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           L +  HS  HLL  A   + G+   + G   +  DG  +D+   +P+   +L+ IE  + 
Sbjct: 69  LEVMRHSTAHLLAQATKRLYGAKEVKLGVGPVIEDGFYYDMDLEEPLNPEDLQKIEKEME 128

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSAL 693
            II +NLP+V + ++R +A+       LG  Y   +        V+++ YE G      L
Sbjct: 129 RIIGENLPIVRKEVSRAEALR--VFGELGDPYKLELINALPEDSVITI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I +  +++
Sbjct: 184 CRGPHVPSTGKIKVFKLMN 202


>gi|163736271|ref|ZP_02143690.1| hypothetical protein RGBS107_14106 [Phaeobacter gallaeciensis
           BS107]
 gi|161390141|gb|EDQ14491.1| hypothetical protein RGBS107_14106 [Phaeobacter gallaeciensis
           BS107]
          Length = 243

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 17/201 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGI---RLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +V +Q+ FYA  GGQ GDTG  +  DG     L IT+  K   G  V        +    
Sbjct: 28  LVLNQSVFYATGGGQPGDTGSLSWSDGAGDHHLPITNTVKGEAGRIVLIPAESEPLPAVG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R      H   H   H LS ++   VS  G  I  +  R D   + P  
Sbjct: 88  QEVTQALDWDRR----FGHMRVHTALHLLSVVIPLPVS--GGSIGAEKGRLDF--NMPEA 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
             + +++ED +N +IA++L V  R +   +  A+       ++   + N R+R+V +   
Sbjct: 140 PEDKQALEDALNALIARDLEVSERWITEAELDANPELVKTMSVAPPRGNGRIRLVRIGSA 199

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
           D  +     CGGTHV ST EI
Sbjct: 200 DEQIDLQP-CGGTHVRSTAEI 219


>gi|226356287|ref|YP_002786027.1| alanine--tRNA ligase [Deinococcus deserti VCD115]
 gi|226318277|gb|ACO46273.1| putative Alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 412

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 129/331 (38%), Gaps = 30/331 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q  E+  D T FY E GGQ  DTG     G   ++T  +K      + HA+   G L   
Sbjct: 27  QAQEIALDATAFYPEGGGQNTDTGRVRWTGSEARMTAARKDKSTGVIWHALA--GDLPPP 84

Query: 569 MSLVL-TIDYQNRRQLSINHSATHLLHHALSTILG----SHVSQNGSCITPDGLRFDVTH 623
            + +   +D   R + +  HS  HLL  A + I      + VS      T D LR D   
Sbjct: 85  GTRITGEVDQDVRWRHAQRHSGEHLLAQAFARINPVFQVAAVSMRSPECTLD-LRGDPAE 143

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVV------TRIMNREDAIASGAAALLGTKYNDRVR 677
           S  + +AE    E      +  + P+V      T  + RE            TK   +VR
Sbjct: 144 SH-VRAAEALLRETLGRRDLELHTPIVPEDQLGTYSLRRE------------TKVRGQVR 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V  +   G     + CGGTHV        + I+     +AG+ R+  + G+ A  +L G
Sbjct: 191 LVIFQEPGGAPFDVSACGGTHVPRASLAAPVVILRTERQKAGLTRVVFMAGEEATRYLSG 250

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
                ++LA    V    +  RV  +  E   L+      + +L    L    +  V  +
Sbjct: 251 VYHSARTLAQGFSVPVDGLADRVAALAGERDALRAAMETLREKLAAALLEAQPLQTVGGV 310

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                ++D  EL   +  L  ++  G +++V
Sbjct: 311 PLREIQLDDPEL---LAPLLMRVPQGTVVVV 338


>gi|206969398|ref|ZP_03230353.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH1134]
 gi|206736439|gb|EDZ53597.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH1134]
          Length = 400

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 181/404 (44%), Gaps = 57/404 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+  L TE  + 
Sbjct: 32  VVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFIAEQ--LHTE-DVE 82

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      +  + TI G H+ +    IT D L  +  H++ 
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAVFWDYFNIPTI-GFHLGK--ETITID-LETENLHAET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+    MN E+A              + +RVV +E Y+ 
Sbjct: 139 VEKAVQIA-----NKIVFENHPIRIEWMNLEEA--KTLPLRKEPTMTENIRVVIIENYDY 191

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 192 NG------CGGTHPKCTGEVGSIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 243

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISE 803
           ++  L  S+ ++  +V          QL+ ++++ +  ++ ++   + A+ N +    +E
Sbjct: 244 VSKQLNSSETDIPAKV---------AQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTE 294

Query: 804 VDSKEL--KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD------RFNAVDL 855
           + +  L  K+  D   ++I + +  ++   +E   +  ++  +D L       +   +D+
Sbjct: 295 IHAGLLISKAFTDRSMQEI-AKLSAIITEQQEHAITYFVIENDDKLQCILACGKTVTLDM 353

Query: 856 ARLSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             L    L    G GGG    A+ GG +    D+ +  + S L+
Sbjct: 354 NALLKDALPAIEGKGGGNKKSARGGGKSVMNGDEFLNQLVSSLQ 397


>gi|154504605|ref|ZP_02041343.1| hypothetical protein RUMGNA_02111 [Ruminococcus gnavus ATCC 29149]
 gi|153795087|gb|EDN77507.1| hypothetical protein RUMGNA_02111 [Ruminococcus gnavus ATCC 29149]
          Length = 389

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 169/410 (41%), Gaps = 78/410 (19%)

Query: 502 VEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           VE+ V  G+  ++V D+T F+ E GGQ  DTG  +G     ++ DVQ+K +G+  H    
Sbjct: 19  VEQCVPDGENWQIVLDRTAFFPEGGGQYADTG-ILGSA---RVLDVQEK-DGVIFH---- 69

Query: 561 ERGILRTEMSLVL------TIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQNG 609
                RT+  L +       ID+  R      H+  H    L+H       +G H+    
Sbjct: 70  -----RTDAPLSVGDCVEGRIDWDLRFMKMQQHTGEHIVSGLVHKRFGYQNVGFHLGSED 124

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  +G          IT  E++ IE   N  + +NL V        +       AL  
Sbjct: 125 CTMDFNG---------EITKEEIREIEWEANRAVVRNLEV--------EVTYPDQKALQT 167

Query: 670 TKYNDR------VRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             Y  +      VR+V++ EY+         C   HV  TGEI  + +      + G+ R
Sbjct: 168 LVYRSKIEIEGQVRIVTIPEYD------VCACCAPHVKQTGEIGQIRLTGVQRYKGGV-R 220

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---L 779
           +  + G RA      + E    ++S L V + +V   VE++  +  + +  +A+ K   L
Sbjct: 221 VTMLCGFRALEDYRRKAESTGCISSALCVKEEDVAQGVEKLKNDCTEWKQRYAQLKRDML 280

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +  E L+      + F      +++ +EL+ +M+ +   +  G  +      +++    
Sbjct: 281 AIRAERLAGQSEDVIVFA----DDLEGEELRILMNLV---LDHGKRICAAFGGDEEHGFR 333

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLG---GGGGGGRPHMAQSGGPNGNKAD 886
            V+   +LD        R  AK L     G GGG+P M Q G   GN+++
Sbjct: 334 YVIGSRILD-------MRPLAKELNETFHGRGGGKPEMVQ-GSVQGNESE 375


>gi|126461592|ref|YP_001042706.1| threonyl/alanyl tRNA synthetase, SAD [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103256|gb|ABN75934.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides ATCC 17029]
          Length = 239

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 19/200 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MSL 571
           ++ D++ FYA  GGQ GD+G    +G R+ +     KA+G  +     E G L  E  S+
Sbjct: 28  ILVDRSIFYATGGGQPGDSGFLDWEGGRIDVA-TAVKADGGRIALVPAEAGPLPPEGASV 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             T+D++ R +    H+A HL    LS ++   V+  G  I  +  R D    +P   A+
Sbjct: 87  RQTLDWERRHRHMRVHTALHL----LSVVIPLPVT--GGQIGAERGRLDFDMPEP--PAD 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDGG 687
             ++E  +N +IA++L V    +  E+ +A  +     +++      RVR+V +     G
Sbjct: 139 PAALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRI---GQG 195

Query: 688 VHSSAL--CGGTHVSSTGEI 705
                L  CGGTHV+ TGEI
Sbjct: 196 AEQVDLQPCGGTHVARTGEI 215


>gi|47226041|emb|CAG04415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 402

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 142/335 (42%), Gaps = 32/335 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V    T  +   GG   D G  IGD   L++T  ++  E +    + +E G       + 
Sbjct: 42  VTLQDTILFPVGGGHPDDHGL-IGDVPVLRVT--RQGPEAVHFVSSPLEEG-----QEVR 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D+  R      HS  HL+     ++ G   +          +  D    KP    +L
Sbjct: 94  VKVDWDRRFDHMQQHSGQHLITALADSLFGYKTTSWEHGRQRSNIELDTPSFKP---GQL 150

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +++ED VN+ I  ++PV  + ++ +D A+    +  L   +   +R+V +E    GV + 
Sbjct: 151 QALEDAVNEKIRAHIPVTVQFLSLDDPAVEKVRSRGLPEDFAGPIRIVDIE----GVEAD 206

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHVS+   + ++ +V     +     +  + G R   +      K +SL S LK 
Sbjct: 207 -MCCGTHVSNLSHLQVIKLVGTEKGKKNKTNLIFLVGNRVLKYAEKSYNKDRSLVSLLKT 265

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAK--RKLQLNVED-----------LSCHKI-ADVNFM 797
                V  V+++ +  R L   +    R++ + +              S HK   D  FM
Sbjct: 266 GPDGHVEAVDKLQKSVRLLNKANLSLLREMAVLIAQNFVSSPERSNFFSLHKKEGDNEFM 325

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + I +E++++E  + +   ++K   G+ +L G SK
Sbjct: 326 NIIANELNTEETLAFLTVGEEK-GPGLFLLAGPSK 359


>gi|319644905|ref|ZP_07999138.1| hypothetical protein HMPREF1012_00171 [Bacillus sp. BT1B_CT2]
 gi|317392714|gb|EFV73508.1| hypothetical protein HMPREF1012_00171 [Bacillus sp. BT1B_CT2]
          Length = 235

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 17/195 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V ++ ++T FY   GGQ  DTG    +G+++   D   + +G   H+  VER +      
Sbjct: 33  VYIILEETAFYPTGGGQPHDTGTL--NGVKVLNVD---EIDGEIRHY--VERPLPHLNDQ 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V  ID++ R      H+  H+L  A + +   H    G  +  D +  D+  S+ +T  
Sbjct: 86  VVGVIDWERRFDHMQQHTGQHILSAAFAQLYDLHTV--GFHLGNDTVTIDLDVSE-LTEE 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
                E   N+II +N  +V + +  +D +      L   K N R+ ++  E++  G   
Sbjct: 143 MAGKAEKLANEIITENRSIVAKWVEYDDLVNYPIRKLPSVKENIRLVMID-EFDYNG--- 198

Query: 691 SALCGGTHVSSTGEI 705
              CGGTH S+TGE+
Sbjct: 199 ---CGGTHPSATGEV 210


>gi|195634791|gb|ACG36864.1| alanyl-tRNA synthetase [Zea mays]
          Length = 263

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 16/225 (7%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI---VERG- 563
           G +V VV D T F+ + GGQ  DTG     G R  + DV+ K +G+  H+      E+G 
Sbjct: 40  GGRVAVVLDATVFHPQGGGQPADTGVISAGGARFLVEDVRAK-DGVVFHYGRFEGTEQGC 98

Query: 564 --ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             + +   ++ L +D + R   S  HSA HLL   +  +   H+        PDG   + 
Sbjct: 99  GTVFKEGETVSLQVDAERRSFNSRLHSAGHLLDICVHNVGLFHLEPGKGYHFPDGPFVEY 158

Query: 622 THSKPITSAELKS--IEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRV 678
               P     +K   +E   N +I++   V+  +   E+ AI  G +       +   R+
Sbjct: 159 KGIIPPDQIPVKKNELEREANRLISEGAKVLASVFPYEEAAILCGGSLPSYISKDSNPRI 218

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V      GG      CGGTHV+    I  L  V+   ++ G+ ++
Sbjct: 219 VKFGDNPGGP-----CGGTHVADISIINSLK-VTNIRVKKGLTKV 257


>gi|160900048|ref|YP_001565630.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|238687213|sp|A9C3D4|SYT_DELAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160365632|gb|ABX37245.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 643

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 75  IRHSTAHLLAYAVKDLFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLVAIEKRMAELAA 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ PVV R++ R++A+A      +G  Y   +       ED  ++       LC G HV 
Sbjct: 134 KDEPVVRRVLPRDEAVAYFKG--IGENYKAEIIASIPSNEDVSLYREGSFEDLCRGPHVP 191

Query: 701 STGEIMLLYIV 711
           STG++    ++
Sbjct: 192 STGKLKFFKLM 202


>gi|160937038|ref|ZP_02084401.1| hypothetical protein CLOBOL_01927 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439939|gb|EDP17687.1| hypothetical protein CLOBOL_01927 [Clostridium bolteae ATCC
           BAA-613]
          Length = 390

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 112/262 (42%), Gaps = 38/262 (14%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           VK+ +   E  EE+  G  + V  +QT FY E GGQ  DTG   G    + +  V +K E
Sbjct: 13  VKSFMCTVEHCEESGKGTWL-VTLNQTGFYPEGGGQPYDTGTLNG----ISVVSVHEKGE 67

Query: 552 GIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            +    A  +E G L   +     ID+Q R     ++   H   H LS ++  H   +  
Sbjct: 68  QVIHELAQPIEEGTLAEGI-----IDWQRR----YDNMQLHTGEHILSGLVHKHFGYDNV 118

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
                     V  +  I   +L  +ED  N ++  N+PV   +   ED + +        
Sbjct: 119 GFHMGAEEVTVDFNGIIEPEDLDWLEDEANQLVYANVPVKV-LYPSEDELKT-------M 170

Query: 671 KYNDR------VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +Y  +      VR+V V   D        C GTHV +TGE+ ++ I S    + G+ R+ 
Sbjct: 171 EYRSKKELSGLVRIVEVPGAD-----VCACCGTHVENTGEVGIIKIRSMIHYKGGV-RLS 224

Query: 725 AITGQRARSHLMGQDEKLKSLA 746
            + G+RA   L+   ++LK  A
Sbjct: 225 MLCGRRA---LLDYRDRLKDEA 243


>gi|91787975|ref|YP_548927.1| threonyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123059945|sp|Q12BR3|SYT_POLSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91697200|gb|ABE44029.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas sp.
           JS666]
          Length = 635

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFSEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLAAIEKRMTELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ PV  R++ R++A+A   +  +G  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPVTRRVLPRDEAVAHFKS--IGEHYKAEIIASIPANEDVSLYREGTFEDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++    ++
Sbjct: 188 STGKLKFFKLM 198


>gi|94311445|ref|YP_584655.1| Ala-tRNA(Pro) hydrolase [Cupriavidus metallidurans CH34]
 gi|93355297|gb|ABF09386.1| Alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 238

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 27/210 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITD-VQKKAEGIFVHHAIVER 562
           AVS   +E+  DQT  YA +GGQ GDTG     DG  + + D V        +H    + 
Sbjct: 24  AVSEAGIEL--DQTVCYARSGGQAGDTGTLTTADGRIVTLADTVYADDRQRILHVPASDA 81

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L+    + + ID+  R +L   H+  HLL   +       V   G  I+PD  R D  
Sbjct: 82  PALQAGDRVEVKIDWTRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDSARIDF- 134

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDR 675
              P ++ +   + + +N +I    PV    +  E+  A        GAA   GT     
Sbjct: 135 -DLPESTLDKAVLTEQLNALINAKTPVTIDRITPEELAAQPDLVRTIGAAPPAGTS---T 190

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +R++ +     GV     CGGTHV++TGEI
Sbjct: 191 IRIIEIP----GVDRQP-CGGTHVANTGEI 215


>gi|315230057|ref|YP_004070493.1| alanyl-tRNA synthetase domain-containing protein [Thermococcus
           barophilus MP]
 gi|315183085|gb|ADT83270.1| alanyl-tRNA synthetase domain protein [Thermococcus barophilus MP]
          Length = 214

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 89/213 (41%), Gaps = 31/213 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    + + DV K  EG  V H + E    R    + 
Sbjct: 27  LLLDQTIFYPTGGGQPHDRGTING----VHVLDVYKDEEG-NVWHVVEEPEKFRIGDEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAE 631
           L ID+  R +L   H+A HLL H L+ +LG    Q  GS ++ +  R+D+ +        
Sbjct: 82  LKIDWDYRYKLMRIHTAMHLLDHVLNEVLGKDKWQLYGSGMSVEKGRYDILYP------- 134

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
                +NVN    Q   ++ R     D          G K   ++R   V          
Sbjct: 135 -----ENVNKYKEQ---IIERFNKYVDEGGEVKIWWEGEKRLTQIRDFEV---------- 176

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 177 LPCGGTHVKDIREIGHIKKLKRSSIGKGKQRLE 209


>gi|194690850|gb|ACF79509.1| unknown [Zea mays]
 gi|219885957|gb|ACL53353.1| unknown [Zea mays]
          Length = 263

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 16/225 (7%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI---VERG- 563
           G +V VV D T F+ + GGQ  DTG     G R  + DV+ K +G+  H+      E+G 
Sbjct: 40  GGRVAVVLDATVFHPQGGGQPADTGVISAGGARFLVEDVRAK-DGVVFHYGRFEGTEQGC 98

Query: 564 --ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             + +   ++ L +D + R   S  HSA HLL   +  +   H+        PDG   + 
Sbjct: 99  GTVFKEGGTVSLQVDAERRSFNSRLHSAGHLLDICVHNVGLFHLEPGKGYHFPDGPFVEY 158

Query: 622 THSKPITSAELKS--IEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRV 678
               P     +K   +E   N +I++   V+  +   E+ AI  G +       +   R+
Sbjct: 159 KGIIPPDQIPVKKNELEREANRLISEGAKVLASVFPYEEAAILCGGSLPSYISKDSNPRI 218

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V      GG      CGGTHV+    I  L  V+   ++ G+ ++
Sbjct: 219 VKFGDNPGGP-----CGGTHVADISIINSLK-VTNIRVKKGLTKV 257


>gi|317419211|emb|CBN81248.1| Alanyl-tRNA synthetase domain-containing protein 1 [Dicentrarchus
           labrax]
          Length = 525

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 150/346 (43%), Gaps = 39/346 (11%)

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGD 537
           DL++ V+S+V     +   +++ V+G+K       V    T  + E GGQ  D G  IGD
Sbjct: 123 DLSDFVTSVVSCCPAE---LKQEVNGKKETVKGFNVKLQDTILFPEGGGQPDDHGL-IGD 178

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L++T  ++  E I    + +E G       + + +D++ R      HS  HL+    
Sbjct: 179 VPVLRVT--RQGTEAIHFVSSPLEEG-----QEVQVKVDWERRFDHMQQHSGQHLITALA 231

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            +  G   +          +  D    KP   A+L+++E+ +N+ I  ++PV  ++++ +
Sbjct: 232 DSFFGYKTTSWELGHQRSTIELDTPSVKP---AQLQALEEAINENIRAHVPVTVQLLSID 288

Query: 658 D-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D A+    +  L   +   +R++ +E  D       +C GTHVS+   + ++ ++     
Sbjct: 289 DPAVEKVRSRGLPEDHAGPIRIIDIEGIDAN-----MCCGTHVSNLSHLQVIKLLGTEKG 343

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           +     +  + G R   +        +SL S LK      V  V+++ +  + LQ  +  
Sbjct: 344 KKNKTNLIFLAGNRVLKYAEKSYSTERSLVSLLKTGPDVHVEAVDKLQKSVKLLQKTNLS 403

Query: 777 --RKLQLNVED-----------LSCHKI-ADVNFMSHIISEVDSKE 808
             R + + +              S HK   D  FM+ I++E++++E
Sbjct: 404 LLRDMAVLIAQNFKNDPQRGNFFSLHKKEGDNEFMNIIVNEINTEE 449


>gi|109115545|ref|XP_001112534.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like isoform 3
           [Macaca mulatta]
          Length = 524

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 166/388 (42%), Gaps = 60/388 (15%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQKV----EVVFDQTPFYAE 523
           +KV  ++PP     +D T  V S   A     E+  E  +G+KV     VV + T  + E
Sbjct: 111 QKVSTKRPPPAMDDLDFTTTVVSCRPA-----ELQTEGSNGKKVLSGFHVVLEDTLLFPE 165

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R   
Sbjct: 166 GGGQPDDHG-TINDISVLRVTRRGEQADHF-------TQTPLDPGSQVLVRVDWERRFDH 217

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKP-ITSAELKSIEDNVND 641
              HS  HL+     T +  H+ +  +     G  R  +    P +T+ ++ +IE +VN+
Sbjct: 218 MQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAIELDTPSMTTEQVAAIEQSVNE 272

Query: 642 IIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I   LPV  R ++ +D  +       L   +   VRVVS++    GV S+ +C GTHVS
Sbjct: 273 KIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPVRVVSIK----GVDSN-MCCGTHVS 327

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +  ++ ++ I+     +     +  + G R    +       K+L + LK    + V  V
Sbjct: 328 NLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAV 387

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCH-------------------KIADVNFMSHII 801
           +++    + LQ    K  L L + DL+ H                   K  D  FM+ I 
Sbjct: 388 KKLQNSTKILQ----KNNLNL-LRDLAVHIAHSLRNSPDWGGVVVLHRKEGDSEFMNIIA 442

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +E+ S+E    +    +K  +G+ +L G
Sbjct: 443 NEIGSEETLLFLTVGDEK-GAGLFLLAG 469


>gi|78066086|ref|YP_368855.1| threonyl-tRNA synthetase [Burkholderia sp. 383]
 gi|123756187|sp|Q39H55|SYT_BURS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77966831|gb|ABB08211.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           sp. 383]
          Length = 635

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + +++ 
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|15805529|ref|NP_294225.1| alanyl-tRNA synthetase-like protein [Deinococcus radiodurans R1]
 gi|6458192|gb|AAF10082.1|AE001909_4 alanyl-tRNA synthetase-related protein [Deinococcus radiodurans R1]
          Length = 409

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 98/247 (39%), Gaps = 23/247 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRT 567
           Q  EV    T FY E+GGQ  D G     G   ++T  +K KA G   H    E   +  
Sbjct: 42  QGQEVALAATAFYPESGGQSSDVGLLRWPGSEARVTHARKDKATGTVWHRVDGELPPVGA 101

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG----SHVSQNGSCITPDGL----RF 619
           E++    +D   R + +  HSA HLL  A   +      + V+  G   T D L      
Sbjct: 102 EVT--GEVDPGPRWRHTQRHSAEHLLAQAFRRVNPAFEVASVNMTGPECTIDFLGDPGEA 159

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+  ++ +    L   E  +   I     +V   + RE            +K   +VR+V
Sbjct: 160 DIRAAEALLRETLGRDELTLETPIVPEAELVNYPLRRE------------SKVGGQVRLV 207

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                DG     + CGGTHV        + I+    +R G  R+  + G+ A  +L G  
Sbjct: 208 MFRGSDGDFFDVSACGGTHVPGAAMCAPVVILRTERVRGGQVRVVFMAGEEASEYLSGVY 267

Query: 740 EKLKSLA 746
           +  ++LA
Sbjct: 268 QSARTLA 274


>gi|298387362|ref|ZP_06996915.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 1_1_14]
 gi|298260031|gb|EFI02902.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 1_1_14]
          Length = 162

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +    G   S+N   I     + D       T AE+++IED VN++I+QN
Sbjct: 23  HTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILPTCPTDAEIQAIEDKVNEVISQN 81

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV    M  E A      + L    ++ +R++ +     G + +  C G HVS+T E+ 
Sbjct: 82  LPVTVEFMTHEQAKGIVDLSKLPADASETLRIIRI-----GDYDACACIGLHVSNTSEVG 136

Query: 707 LLYIVS 712
              I+S
Sbjct: 137 TFKIIS 142


>gi|49478299|ref|YP_037698.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329855|gb|AAT60501.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 411

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 173/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G  + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETVFYPTGGGQPHDTGTLNGIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQYILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKALMSGDEFLNQLISSLQ 408


>gi|163796942|ref|ZP_02190898.1| predicted metal-dependent hydrolase [alpha proteobacterium BAL199]
 gi|159177689|gb|EDP62240.1| predicted metal-dependent hydrolase [alpha proteobacterium BAL199]
          Length = 236

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 29/222 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V D+T FY   GGQ GD+G     DG ++ ITD  +K EG   H       +L     +
Sbjct: 27  IVLDRTVFYPTGGGQPGDSGSLTRPDGAQVSITDT-RKVEGGIAHVPAEGAAMLSVGDKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             T+D+  R +    H+A H++    S I G      G  I     R D  + +P    E
Sbjct: 86  TATLDWDRRYRHMRVHTALHVM---CSQIQGG---VTGGQIGDGKGRLDF-NLEPENVPE 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            +S+ +++N +IA + P+    +  E+  A+           D VR +SV+   G     
Sbjct: 139 KESLTEHLNALIAVDHPLGISWITDEELTAN----------PDLVRTMSVKPPMGAGRVR 188

Query: 692 AL----------CGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +          CGGTHV STGEI  + I    S     RRI
Sbjct: 189 MIRIGDAVDYQPCGGTHVKSTGEIGRIAITKIESKGKQNRRI 230


>gi|284172780|ref|YP_003406162.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284017540|gb|ADB63489.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 403

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 117/267 (43%), Gaps = 25/267 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  ++T FYAE GGQ  D G   G    + + DVQ + +G  VH  +       T   + 
Sbjct: 31  VRLEETYFYAEGGGQPADRGTLNG----IDVVDVQTR-DGETVH-TLATAPDFETGDDVT 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            +ID + R      H+A+H+L+ A   +   H    G  I  +  R D    +       
Sbjct: 85  GSIDDEFRTYCMRAHTASHVLYGAGRELFDDH-GYGGFDIDAEKGRIDFETDRDPDEVNA 143

Query: 633 KSIEDNVNDIIAQNLPVVTRIMN------REDAI--ASGAAALLGTKYNDRVRVVSVEYE 684
            +++  VN+++ ++  V  R M+      R++ +   +GAA     +  D VRVV ++  
Sbjct: 144 LTLQRMVNEVVWESRDVSWREMDAAQARDRDEIVFNETGAA-----ETTDTVRVVEIDDW 198

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D      A CGGTHV +T EI  + ++  S+  +G+ R+E   G  A    + +      
Sbjct: 199 D-----IAACGGTHVENTVEIGPVKVLEVSNPGSGLVRVEYAVGPTAVRAQLDETRAATR 253

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            A  L+ S   +  R   + EE   L+
Sbjct: 254 AARTLETSVEELPERATAVVEENATLE 280


>gi|57640919|ref|YP_183397.1| alanyl-tRNA synthetase-related protein (partial) [Thermococcus
           kodakarensis KOD1]
 gi|57159243|dbj|BAD85173.1| alanyl-tRNA synthetase-related protein (partial) [Thermococcus
           kodakarensis KOD1]
          Length = 215

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 31/213 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H + E  + +    + 
Sbjct: 28  LLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEG-NVWHVVAEPEMFKVGDEVE 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAE 631
           L ID+  R +L   HSA HLL H L+ +LG       GS ++ +  R+D+ + + +   +
Sbjct: 83  LKIDWDYRYKLMRIHSAMHLLDHVLNEVLGKGKWKPYGSGMSYEKGRYDIEYPENVNQYK 142

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            K IE                + NR   +  G    +  +   R+  +  ++E       
Sbjct: 143 EKIIE----------------LFNR--YVDEGGEMKIWWEGETRLTQIR-DFE------V 177

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTHV    EI  L  +  SS+  G +R+E
Sbjct: 178 IPCGGTHVRDIKEIGHLKKLKRSSLGRGKQRLE 210


>gi|228953891|ref|ZP_04115930.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805859|gb|EEM52439.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 411

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 124/261 (47%), Gaps = 40/261 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LETENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVE-Y 683
           +  A   +     N I+ +N P+    MN E+A        L  + N  + +RVV +E Y
Sbjct: 150 VEKAVQIA-----NKIVFENHPIRIEWMNLEEA----KTLPLRKEPNITENIRVVIIENY 200

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-L 742
           +  G      CGGTH   TGE+ L+ ++     + GI R+  I G R    LMGQ ++ +
Sbjct: 201 DYNG------CGGTHPKRTGEVGLIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIM 252

Query: 743 KSLASFLKVSQGNVVGRVEEI 763
           K ++  L  S+ ++  +V ++
Sbjct: 253 KDVSKQLNSSETDIPAKVAQL 273


>gi|229179908|ref|ZP_04307254.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 172560W]
 gi|228603589|gb|EEK61064.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 172560W]
          Length = 411

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 36/259 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      +  + TI G H+ +    IT D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAVFWDYFNIPTI-GFHLGK--ETITID-LETENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+    MN E+A              + +RVV +E Y+ 
Sbjct: 150 VEKAVQIA-----NKIVFENHPIRIEWMNLEEA--KTLPLRKEPTMTENIRVVIIENYDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEI 763
           ++  L  S+ ++  +V ++
Sbjct: 255 VSKQLNSSETDIPAKVAQL 273


>gi|327193146|gb|EGE60056.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 319

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 17/205 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMS 570
           +  DQT FYA +GGQ GDTG     DG ++ +   +  A + I +H  +          +
Sbjct: 103 IELDQTCFYAASGGQPGDTGQLERADGSKIALGQTKHGASKDIIIHVPLENEPQPEIGET 162

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL +D+  R +L   H+A HLL    S  I G+ V +  S       R D   S+ I  
Sbjct: 163 LVLHVDWPRRYRLMRMHTACHLLSVVCSYPITGAAVGEEES-------RIDFDMSETIDK 215

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDG 686
            E+ +    + +++ QN PV  + +  +D +A+    +        +   RV  V     
Sbjct: 216 DEVTA---RLMELVGQNHPVYLQWIT-DDELAANPDIVKSKNVRPPMGLGRVSLVCIGKN 271

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIV 711
               S  CGGTHVS T E+  ++I 
Sbjct: 272 SSIDSQPCGGTHVSETQEVGQIHIA 296


>gi|194216871|ref|XP_001917615.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 [Equus
           caballus]
          Length = 524

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 49/362 (13%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGG 526
           +KV  +KPP     +D    V S V  +  +G    +E +SG  ++VV + T  + E GG
Sbjct: 111 KKVSTKKPPPAMDDLDFATTVVSCVPELQTEGSNGKKEVLSG--LQVVLEDTLLFPEGGG 168

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G   G  + L++T    +A+          +  L     + + +D++ R      
Sbjct: 169 QPDDHGTIDGVPV-LRVTRRGAQADHF-------TQTPLTPGSEVQVRVDWERRFDHMQQ 220

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HL+      + G   +          +  D   S  +T+ ++ +IE +VN+ I   
Sbjct: 221 HSGQHLITAVADHLFGLKTTSWELGRLRSVIELD---SPSVTTEQVAAIEQSVNEKIRDR 277

Query: 647 LPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           LPV  R ++ +D  +       L   +   +RVV+++    GV S+ +C GTHVS+  ++
Sbjct: 278 LPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIK----GVDSN-MCCGTHVSNLSDL 332

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            ++ I++    +     +  + G R    +       K+L S LK    + V  V+++  
Sbjct: 333 QVIKILATEKGKKNKTNLIFLAGNRVLKWMERSHGTEKALTSLLKCGAEDHVEAVKKLQN 392

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCH-------------------KIADVNFMSHIISEVDS 806
             + LQ    K  L L + DL+ H                   K  D  FM+ I +E+ S
Sbjct: 393 STKLLQ----KSNLNL-LRDLAVHVAHSLRNSPDWGGVVALHRKEGDSEFMNIIANEIGS 447

Query: 807 KE 808
           +E
Sbjct: 448 EE 449


>gi|163741200|ref|ZP_02148592.1| hypothetical protein RG210_17110 [Phaeobacter gallaeciensis 2.10]
 gi|161385553|gb|EDQ09930.1| hypothetical protein RG210_17110 [Phaeobacter gallaeciensis 2.10]
          Length = 243

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 17/201 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGI---RLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +V +Q+ FYA  GGQ GDTG  +  DG     L IT+  K   G  V        +    
Sbjct: 28  LVLNQSVFYATGGGQPGDTGRLSWSDGAGDHHLPITNTVKGEAGRIVLIPAEGEPLPAVG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R      H   H   H LS ++   VS  G  I  +  R D   + P  
Sbjct: 88  QEVTQALDWDRR----FGHMRVHTALHLLSVVIPLPVS--GGSIGAEKGRLDF--NMPEA 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
             + +++ED +N +IA++L V  R +   +  A+       ++   + N R+R+V +   
Sbjct: 140 PEDKQALEDALNALIARDLEVSERWITEAELDANPELVKTMSVAPPRGNGRIRLVRIGSA 199

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
           D  +     CGGTHV ST EI
Sbjct: 200 DEQIDLQP-CGGTHVRSTAEI 219


>gi|124516423|gb|EAY57931.1| Threonyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 617

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA H L  A+  +  S     G   T +G  +D  + +P T  +L+ IE+ +  +I
Sbjct: 42  ALRHSAAHTLAQAVKKLYPSAQVGVGPA-TEEGFYYDFRYERPFTPEDLERIENEMKSLI 100

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
             +LP+V + ++R      G A  L  + N+  ++  ++          YE G      L
Sbjct: 101 RSSLPIVRKPVSR------GEAEKLFRERNEPFKLELIQGIPEDAEITVYEQGEF--VDL 152

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G HVSSTGEI  + ++S SS
Sbjct: 153 CRGPHVSSTGEIPAVRLLSTSS 174


>gi|269836349|ref|YP_003318577.1| Threonyl/alanyl tRNA synthetase SAD [Sphaerobacter thermophilus DSM
           20745]
 gi|269785612|gb|ACZ37755.1| Threonyl/alanyl tRNA synthetase SAD [Sphaerobacter thermophilus DSM
           20745]
          Length = 247

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 102/233 (43%), Gaps = 33/233 (14%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG- 563
           AV G+   VV D+T FY   GGQ  D G         Q+  + ++ +G  VH  ++E G 
Sbjct: 21  AVVGE-TGVVLDRTAFYPGGGGQPHDLGTLTDGTHSWQVVRIARE-DGQIVH--VLEGGA 76

Query: 564 ------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  LR E      ID+  R +L   HSA H+L   +    G+ V+  G  + PD  
Sbjct: 77  PPPPGTALRGE------IDWDRRYRLMRMHSALHVLCGVVFREYGALVT--GGNMGPDKA 128

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---- 673
           R D    + +    +  IE   N+ IA  LP+  R + RE+A       L+ TK N    
Sbjct: 129 RMDF-ELEDLNPERVAHIERTANERIAAGLPISWRTLPREEAFQ--IPDLIRTKINLLPA 185

Query: 674 --DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               VRVV +E  D         GGTHV +T EI  L ++   S     +R+E
Sbjct: 186 HIQEVRVVEIEGLDLQAD-----GGTHVRNTREIGGLKVIGTRSKGRINKRLE 233


>gi|15897381|ref|NP_341986.1| hypothetical protein SSO0450 [Sulfolobus solfataricus P2]
 gi|284173278|ref|ZP_06387247.1| hypothetical protein Ssol98_01285 [Sulfolobus solfataricus 98/2]
 gi|74557376|sp|Q97ZX2|ALAXM_SULSO RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|13813606|gb|AAK40776.1| Alanyl-tRNA synthetase truncated homolog (alaS-like1) [Sulfolobus
           solfataricus P2]
 gi|261602058|gb|ACX91661.1| Alanyl-tRNA synthetase, class IIc-like protein [Sulfolobus
           solfataricus 98/2]
          Length = 236

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GG   DTG  + + G R+ +T+V K+ E   + H I + G L     +
Sbjct: 27  VILDKTAFYPGGGGLDNDTGFLVNEKGERISVTEV-KRGENGEILHKIDQNGSLNVNEKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + TID+  R ++   H+A+H++        G+ ++  G  I+P+  + D       T  E
Sbjct: 86  IGTIDWDRRYRMMRLHTASHIVAALAYRKFGALIT--GGHISPEQAKDDFNVENKDTLIE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L    +  N+II +++ +    + RE+A+   A   L  +   ++ +  +  E  G+   
Sbjct: 144 LI---NEANEIIKKDIELKIYFLPREEALMIPAIVKLAGRNPPQIPIWRI-VEIPGIDIQ 199

Query: 692 ALCGGTHVSST---GEIMLLYIVSESSIR 717
           A  GG HV +T   GEI+LL + ++   R
Sbjct: 200 A-DGGPHVKNTKEIGEIVLLKVENKGKGR 227


>gi|303258323|ref|ZP_07344326.1| putative alanyl-tRNA synthetase [Burkholderiales bacterium 1_1_47]
 gi|302858769|gb|EFL81857.1| putative alanyl-tRNA synthetase [Burkholderiales bacterium 1_1_47]
          Length = 388

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 32/227 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV D T FY E GGQ  D G  +G+   + +  V     G  + H I +   L    ++
Sbjct: 32  EVVLDDTAFYPEGGGQPSDEG-TLGEAKVIFVKRV-----GPEIVHYIDKP--LEVGSTV 83

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID++ R     NH+  H+    +       +   G  + PD +  D +   P+ S  
Sbjct: 84  IGKIDWERRFDNMQNHTCEHIFSGLVHQKY--KLENVGFHMDPDDITVDFSGEIPMES-- 139

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVSVEYED 685
           +  +E  VN  I Q++ +       E         L   +Y  +      VR+V++    
Sbjct: 140 IPELEQLVNQAITQDIDIKIEFPTEE--------VLEAMEYRSKKELHGVVRIVTIP--- 188

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            G    A C GTHV  +GEI +  I+  S  R G  R+  + G+RAR
Sbjct: 189 -GCDRCACC-GTHVRRSGEIGMFKILDASKHRGGT-RVRFVAGERAR 232


>gi|329928815|ref|ZP_08282654.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328937458|gb|EGG33879.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 645

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + D   +I  G+R     V  K +GI     +V+      + +L+  +       
Sbjct: 16  EAGSNIEDVAASISSGLRKNA--VAGKMDGI-----VVDLSTPLQDGALIEIVTQDTPEG 68

Query: 583 LSI-NHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           L +  HS  HLL  A   + G    + G   +  DG  +D+   +P+   +L+ IE  + 
Sbjct: 69  LEVMRHSTAHLLAQATKRLYGQKEVKLGVGPVIEDGFYYDMDLEEPLNPEDLQKIEKEME 128

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSAL 693
            II +NLP+V + ++R +A+       LG  Y   +        ++++ YE G      L
Sbjct: 129 RIIGENLPIVRKEVSRAEALRIFGE--LGDPYKLELINALPEDSIITI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I +  +++
Sbjct: 184 CRGPHVPSTGKIKVFKLMN 202


>gi|225026308|ref|ZP_03715500.1| hypothetical protein EUBHAL_00549 [Eubacterium hallii DSM 3353]
 gi|224956372|gb|EEG37581.1| hypothetical protein EUBHAL_00549 [Eubacterium hallii DSM 3353]
          Length = 387

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 39/369 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ ++T FY E GGQ  D G   G+    ++ DVQ   +G   H   + +  L+    +V
Sbjct: 32  IILNETAFYPEGGGQPADKGTIEGE----EVLDVQ-YVDGEICH---IMKKPLKAGEQVV 83

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R  L   HS  H++   +        +G H+ +    I   G+         +
Sbjct: 84  GRINWEWRFDLMQQHSGEHIVSGMIHEKYGYENVGFHMGEEVITIDLSGM---------L 134

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  ++  IE  VND I  N  V   I   ++            +    +R+V    E  G
Sbjct: 135 TEEQVAEIEQKVNDYIWMNQEV--NIFYPDERQRKLIPYRSKKELTGEIRLV----EFPG 188

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
               A C G HV+   +I L+ I+S    R G+ R+E ++G+RA  +L    E+   +A 
Sbjct: 189 ADLCACC-GLHVTHASQIGLVKILSSKKFRDGV-RMEMLSGKRALEYLSKSAEQNSQVAV 246

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            L V +      V+ + +E   L+   A  K Q + E ++   +   N +  I  +++  
Sbjct: 247 RLSVKEKETKDAVQRLLDEVYNLKGELAAEK-QKHFEQIAASCVGKENVLL-IEGDMEPV 304

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           E++   DA+            G  K+     +     D+       +L +   K L  G 
Sbjct: 305 EVRKCTDAILDTCSGVAAFFAGNDKDGYKYAIGQREGDVR------ELVKQVNKEL-NGR 357

Query: 868 GGGRPHMAQ 876
           GGG+P  AQ
Sbjct: 358 GGGKPFFAQ 366


>gi|229092592|ref|ZP_04223743.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-42]
 gi|228690745|gb|EEL44521.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-42]
          Length = 411

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 172/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG   G    + +  V++  E I   H I E+  L TE  + 
Sbjct: 43  VILNETAFYPTGGGQPHDTGTLNG----ITVFGVEEVNEEI--RHFITEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAIMSGDEFLNQLISSLQ 408


>gi|218463377|ref|ZP_03503468.1| alanyl-tRNA synthetase protein [Rhizobium etli Kim 5]
          Length = 245

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 17/204 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMS 570
           +  DQT FYA +GGQ GDTG     DG ++ +   +  A + I +H  +          +
Sbjct: 29  IELDQTCFYAASGGQPGDTGQLERADGSKIVLGQTKHGASKDIIIHVPLDNEPQPEIGET 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL +D+  R +L   H+A HLL    S  I G+ V +  S       R D   S+ I  
Sbjct: 89  LVLHVDWPRRYRLMRMHTACHLLSVICSYPITGAAVGEEES-------RIDFDMSETIDK 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDG 686
            E+ +    + +++ QN PV  + +  +D +A+    +        +   RV  V   + 
Sbjct: 142 DEVTA---RLMELVGQNHPVYLQWIT-DDELAANPDIVKSKNVRPPIGLGRVSLVCIGEN 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI 710
               S  CGGTHVS T E+  ++I
Sbjct: 198 SSIDSQPCGGTHVSETQEVGQIHI 221


>gi|260219598|emb|CBA26443.1| Threonyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 665

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 9/184 (4%)

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLS-I 585
           + +   +IG G+       + +AEG     A +V+     T  S +  I  ++   L  I
Sbjct: 41  VAEVAASIGTGLAKAALAGKVRAEGESADAAKVVDTSFQMTADSALSIITAKDADGLEVI 100

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL +A+  +        G  I   G  +D ++ +P T  +L +IE  + ++  +
Sbjct: 101 RHSTAHLLAYAVKELFPDAQVTIGPVIE-HGFFYDFSYKRPFTPEDLAAIEKKMTELANK 159

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSS 701
           + PVV R++ R+DA+    +  LG +Y   +       ED  ++       LC G HV S
Sbjct: 160 DEPVVRRVLPRDDAVEYFKS--LGEQYKAEIIASIPANEDVSLYREGNFEDLCRGPHVPS 217

Query: 702 TGEI 705
           TG++
Sbjct: 218 TGKL 221


>gi|218674822|ref|ZP_03524491.1| alanyl-tRNA synthetase protein [Rhizobium etli GR56]
          Length = 245

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 17/204 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMS 570
           +  DQT FYA +GGQ GDTG     DG ++ +   +  A + I +H  +          +
Sbjct: 29  IELDQTCFYAASGGQPGDTGQLERADGSKIGLGQTKHGASKDIIIHVPLDNAPQPEIGET 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL +D+  R +L   H+A HLL    S  I G+ V +  S       R D   S+ I  
Sbjct: 89  LVLHVDWPRRYRLMRMHTACHLLSVVCSYPITGAAVGEEES-------RIDFDMSETIDK 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDG 686
            E+ +    + +++ QN PV  + +  +D +A+    +        +   RV  V   + 
Sbjct: 142 DEVTA---RLMELVGQNHPVYLQWIT-DDELAANPDIVKSKNVRPPIGLGRVSLVCIGEN 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI 710
               S  CGGTHVS T E+  ++I
Sbjct: 198 SSIDSQPCGGTHVSETQEVGQIHI 221


>gi|153009471|ref|YP_001370686.1| threonyl/alanyl tRNA synthetase SAD [Ochrobactrum anthropi ATCC
           49188]
 gi|151561359|gb|ABS14857.1| Threonyl/alanyl tRNA synthetase SAD [Ochrobactrum anthropi ATCC
           49188]
          Length = 247

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 16/204 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQIT-DVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ DQT FYA +GGQ GD G     DG R++I+  V  + +   +H     +        
Sbjct: 31  IILDQTNFYATSGGQPGDIGFLERADGSRIEISATVTGENKNEIIHVPAEGQASPTVGEK 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL +D+  R +L   H+A HLL      +I G+ V ++ S +  D    D +++K   +
Sbjct: 91  LVLHLDWPRRYKLMRMHTACHLLSVVCPFSITGAAVGEDESRVDFD--LPDPSYTKEFVT 148

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG---AAALLGTKYNDRVRVVSVEYEDG 686
             L     N ND +A         +   D + S        LG     R+R+V +   + 
Sbjct: 149 ERLME-RVNANDAVAIRWISDEEFLANPDIVKSKNVRPPVGLG-----RIRLVLI--GEN 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI 710
           GV  S  CGGTHVS T E+  ++I
Sbjct: 201 GVVDSQPCGGTHVSETQEVGEIHI 224


>gi|229080827|ref|ZP_04213345.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-2]
 gi|228702561|gb|EEL55029.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-2]
          Length = 411

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 180/404 (44%), Gaps = 57/404 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++ ++     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINRE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LETENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+    MN E+A              + +RVV +E Y+ 
Sbjct: 150 VEKAVQIA-----NKIVFENHPIRIEWMNLEEA--KTLPLRKEPNMTENIRVVIIENYDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISE 803
           ++  L  S+ ++  +V          QL+ ++++ +  ++ ++   + A+ N +    +E
Sbjct: 255 VSKQLNSSETDIPAKV---------AQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTE 305

Query: 804 VDSKEL--KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD------RFNAVDL 855
           + +  L  K+  D   ++I + I  ++   +E   +  ++  +D L       +   +D+
Sbjct: 306 IHAGLLISKAFTDRSMQEI-AKISAIITEQQEHAITYFVIENDDKLQCILACGKTVTLDM 364

Query: 856 ARLSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             L    L    G GGG    A+ GG      D+ +  + S L+
Sbjct: 365 NALLKDALPAIEGKGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|160885717|ref|ZP_02066720.1| hypothetical protein BACOVA_03721 [Bacteroides ovatus ATCC 8483]
 gi|156108530|gb|EDO10275.1| hypothetical protein BACOVA_03721 [Bacteroides ovatus ATCC 8483]
          Length = 158

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N   I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIED VN++I+QNLPV    M  E A      + L    ++ + +V +     G 
Sbjct: 60  AEQIQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLHIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS T E+    I+S
Sbjct: 115 YDACACIGLHVSHTSEVGTFKIIS 138


>gi|186476790|ref|YP_001858260.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia phymatum STM815]
 gi|184193249|gb|ACC71214.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phymatum STM815]
          Length = 243

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 98/224 (43%), Gaps = 30/224 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAEGIF----VHHAIVERGILRTE 568
            DQT FY   GGQ GD G   + DG R+QI D +K K EG      VH     +  L  +
Sbjct: 30  LDQTVFYPLGGGQAGDAGVLTLADGTRIQIADTRKAKFEGATPDDAVHVPAPGQEALLAQ 89

Query: 569 MS----LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           ++    L   ID+  R +    H+A+HL+   L   +      +G  IT D  R D    
Sbjct: 90  LAAGQPLTAEIDWGRRYRHMRLHTASHLMCAVLPYPV------DGCSITSDYARLDFATV 143

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVV 679
           +PI   E   +E  + +++     V T+ +  +D +AS    +            RVR++
Sbjct: 144 EPIGREE---VETRLAELVGGAHGVATQWIT-DDEMASRPELVRTMSVKPPMGLGRVRLL 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 200 RIE----GVDLQP-CGGTHVRNTQEIGGLRVAKLEKKSARTRRL 238


>gi|145640916|ref|ZP_01796498.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274430|gb|EDK14294.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 134

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 2/112 (1%)

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S  KI DV+ ++  +  +++K L+ ++D L+ ++ SG+I    I  EK  ++++ VT DL
Sbjct: 23  SAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVIAFASILDEK-VNLVVGVTNDL 81

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             +  A +L  L A+ +GG GGG RP MA +GG       QAI     +L K
Sbjct: 82  TAKIKAGELVNLMAQQVGGKGGG-RPDMAMAGGSQPENVAQAIKVAQDWLNK 132


>gi|294499023|ref|YP_003562723.1| Threonyl and Alanyl tRNA synthetase domain-containing protein
           [Bacillus megaterium QM B1551]
 gi|294348960|gb|ADE69289.1| Threonyl and Alanyl tRNA synthetase domain protein [Bacillus
           megaterium QM B1551]
          Length = 391

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 170/400 (42%), Gaps = 36/400 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E++E         +   QT FY E GGQ  D G   G    + + DV +  E   V+H
Sbjct: 16  ETEVIETRSLSNGYALTLKQTAFYPEGGGQPSDYGNIAG----IDVKDVYE--ENGEVYH 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +     L  + ++   I++  R      HS  HLL   L      H       +  + +
Sbjct: 70  IV---NTLPAQTNVTCEINWHRRFDHMQQHSGQHLLSALLIDTYDIHTV--SFHLGNEAV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + ++  +L  IE  VND I  N  + T  + +E+ + + A   +    ++ VR
Sbjct: 125 SIDLNVPQ-LSHEQLLHIEKVVNDAIHSNRHIKTYEVKKEE-LHTLALRKVPDLEDEVVR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E    G+  SA C GTHV+  GE+ L+ +      R G  R+    G RA +    
Sbjct: 183 IVEIE----GIDVSACC-GTHVNQIGELGLIKLTKTEKQR-GNTRLFFKCGMRALADYQQ 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVN 795
             E +  L++    S+  VV R++++  E ++LQ    K+  +L  E+ +    ++    
Sbjct: 237 SQEIVAELSNKFSTSRELVVERIKKLETEQKELQ----KQLEELKNENAAYLASELESKK 292

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             S +    +++ LK V    ++ +Q+    +L   S ++K  VL      L    + V 
Sbjct: 293 EGSFLYHHFENRTLKDVQALTKQLLQTPDTTLLFSFSSDQK--VL------LAHSGSGVK 344

Query: 855 LARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              L  ++L    G GGG P  AQ+   +    +  I+ V
Sbjct: 345 CGELYKELLPLYDGKGGGGPKQAQASFSSSENMNAFISAV 384


>gi|294873445|ref|XP_002766631.1| alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239867663|gb|EEQ99348.1| alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 403

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGIL 565
           G K  V  DQT  Y E GGQ  DTG  IG+    ++  V K +EG   H+  + VE G  
Sbjct: 4   GSKFVVTLDQTLLYPEGGGQPSDTG-RIGNA---KVLYVNKNSEGEVYHYVDSKVEVG-- 57

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLL-----HHALSTILGSHVSQ---NGSCITPDG- 616
                + +T+D+  R   +  HS  HL+     H  +    G   S    N SC    G 
Sbjct: 58  ---SEVAVTLDWDRRWDNTQQHSGQHLISALCEHAEIFPEFGKTDSWEFGNESCSVDIGP 114

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-------AALLG 669
              D+        + +K++E   N  I ++  V  R M R +             +AL  
Sbjct: 115 CNLDLIPQGETLESRVKALEKACNQAIREHRTVFNRQMKRSELEDENGNRDPMLRSALPK 174

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
               D  R+V ++    G+  +A CGGTHV +  E+  + I+  S
Sbjct: 175 KVKGDVFRIVEID----GIEKNA-CGGTHVENLSELQCVKIIGHS 214


>gi|206603264|gb|EDZ39744.1| Threonyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 617

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 19/142 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA H L  A+  +  S     G   T +G  +D  + +P T  +L+ IE+ +  +I
Sbjct: 42  ALRHSAAHTLAQAVKKLYPSAQVGIGPA-TEEGFYYDFRYERPFTPEDLERIENEMKSLI 100

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
             +LP+V + ++R      G A  L  + N+  ++  ++          YE G      L
Sbjct: 101 RSSLPIVRKPVSR------GEAEKLFRERNEPFKLELIQGIPEDAEITVYEQGEF--VDL 152

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G HVSSTGEI  + ++S SS
Sbjct: 153 CRGPHVSSTGEIPAVRLLSTSS 174


>gi|320528277|ref|ZP_08029439.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
 gi|320131191|gb|EFW23759.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
          Length = 369

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 155/380 (40%), Gaps = 60/380 (15%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            F +T FY E GG  GD G   G    L++ D+  K E   ++H +   G L+  +   +
Sbjct: 25  TFAETVFYGEKGGMPGDKGTING----LEVIDL--KWEDDVLYHKV--DGTLQNPIH--M 74

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D + R   +   SA HLL       +G ++   G   +P+   ++V +SK +    L+
Sbjct: 75  EVDKETRIINTTVQSAYHLLDGYYGK-MGLYIVAIG-VTSPENQWYEV-NSKDLDEKHLQ 131

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSS 691
            ++D +ND + Q++P         +      +     KY  +D VRVV+      G   S
Sbjct: 132 EVQDFMNDTLLQDIPT--------EFTYYKGSEYPNPKYANHDEVRVVTF-----GDIDS 178

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CG  HV++  +I    I+       G  RI           L      ++ L   L  
Sbjct: 179 QPCGTPHVNNVNQIGSFIILGSEKTSRGT-RIYTTVSWATNIKLKKYYNLIQELRKILNA 237

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKEL 809
            + +++  ++ +    R    I+ K+  +L  E L+ +K+ D+  M    ++  VD  +L
Sbjct: 238 KEDDILENIQTL----RNTNKIYKKQIEELQKE-LTAYKVKDILQMKANVLVDVVDVSQL 292

Query: 810 KSVMDALQKKIQSGIIMLVG---------ISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           ++V  AL  ++ S  I++           IS E KA  +    E+ L+            
Sbjct: 293 RTVSQALLNQVSSTKILITSSDDINDFSIISPEGKARDIYAAIEESLE------------ 340

Query: 861 KVLGGGGGGGRPHMAQSGGP 880
                GGG  +   A+S  P
Sbjct: 341 ---ASGGGSPKIVTARSSKP 357


>gi|311108327|ref|YP_003981180.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Achromobacter xylosoxidans
           A8]
 gi|310763016|gb|ADP18465.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Achromobacter xylosoxidans A8]
          Length = 236

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 28/210 (13%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           AVS + VE+  D+T  YA +GGQ GD+G   + DG  L +TD     +   + H ++E G
Sbjct: 23  AVSPEGVEL--DETVCYARSGGQAGDSGTLTLADGRALALTDTVYADDRQRILH-VLEGG 79

Query: 564 IL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           +  +    + + ID+  R +L   H+  HLL      ++ + V+  G  I+PD  R D  
Sbjct: 80  MTPQVGDRVSVAIDWPRRHRLMRLHTCLHLL----GALVPAPVT--GCSISPDSARVDF- 132

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDR 675
              P ++ +   + + +N +I     V    +  E   A        GAA   GT     
Sbjct: 133 -DLPESTLDKADLTERLNALIEARTGVSINCITPEQLAAEPDLVRTVGAAPPAGTA---S 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +R+V +     GV     CGGTHV++TGEI
Sbjct: 189 IRIVEIP----GVDRQP-CGGTHVANTGEI 213


>gi|113868616|ref|YP_727105.1| metal-dependent hydrolase [Ralstonia eutropha H16]
 gi|113527392|emb|CAJ93737.1| predicted metal-dependent hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Ralstonia eutropha H16]
          Length = 237

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 25/202 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITD-VQKKAEGIFVHHAIVERGILRTEMS 570
           +  D+T  YA +GGQ GDT   A+ DG  + I D +  +     +H    +  + R    
Sbjct: 29  IELDETVCYARSGGQAGDTATLALADGRTVAIADTIYAEDRSRILHVPAPDAPLPRVGER 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + +TID+  R +L   H+  HLL   +       V   G  I+P+  R D     P ++ 
Sbjct: 89  VTVTIDWARRHKLMRLHTCLHLLGSLIP------VPVTGCGISPESARVDF--DLPESTL 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDRVRVVSVEY 683
           +   + + +N +I  +  V T ++  ++  A        GAA   GT     +R++ +  
Sbjct: 141 DKADLTERLNALIHADTAVRTTLITPQELAAQPELVRTIGAAPPAGTA---SIRIIEIP- 196

Query: 684 EDGGVHSSALCGGTHVSSTGEI 705
              GV     CGGTHV++T EI
Sbjct: 197 ---GVDRQP-CGGTHVANTSEI 214


>gi|172060451|ref|YP_001808103.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|238689138|sp|B1YP13|SYT_BURA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171992968|gb|ACB63887.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 635

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + +I  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQTDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|171318442|ref|ZP_02907597.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171096356|gb|EDT41258.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 635

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + +I  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|115351412|ref|YP_773251.1| threonyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323391|sp|Q0BG06|SYT_BURCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115281400|gb|ABI86917.1| Ser-tRNA(Thr) hydrolase [Burkholderia ambifaria AMMD]
          Length = 635

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + +I  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQTDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|153214946|ref|ZP_01949729.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124115019|gb|EAY33839.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 57

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 9/49 (18%)

Query: 141 KKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSEIFFDQGE 181
           KK+ G+ AD+IIRI          +DNFW M +TGPCGPC+EIF+D G+
Sbjct: 10  KKV-GIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGD 57


>gi|170701132|ref|ZP_02892106.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133954|gb|EDT02308.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 635

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + +I  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQTDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|114667072|ref|XP_001157692.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 1
           [Pan troglodytes]
 gi|114667074|ref|XP_001157998.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 2
           [Pan troglodytes]
 gi|114667076|ref|XP_511526.2| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 4
           [Pan troglodytes]
 gi|114667078|ref|XP_001158111.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 3
           [Pan troglodytes]
          Length = 527

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 36/312 (11%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K      +VV + T  + 
Sbjct: 111 KKVSTKRPPPAMDDLDFTTTVVSCCPA-----ELQTEGSNGKKEVLSGFQVVLEDTVLFP 165

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R  
Sbjct: 166 EGGGQPDDRG-TINDISVLRVTRRGEQADHF-------TQTPLDPGSQVLVRVDWERRFD 217

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKP-ITSAELKSIEDNVN 640
               HS  HL+     T +  H+ +  +     G  R  +    P +T+ ++ +IE +VN
Sbjct: 218 HMQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVAAIEQSVN 272

Query: 641 DIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           + I   LPV  R ++ +D  +   +   L   +   +RVVS+E    GV S+ +C GTHV
Sbjct: 273 EKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVSIE----GVDSN-MCCGTHV 327

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+  ++ ++ I+     +     +  + G R    +       K+L + LK    + V  
Sbjct: 328 SNLSDLQVIKILGTEKGKKNRTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEA 387

Query: 760 VEEIWEEYRKLQ 771
           V+++    + LQ
Sbjct: 388 VKKLQNSTKILQ 399


>gi|325679368|ref|ZP_08158953.1| threonine/alanine tRNA ligase second additional domain protein
           [Ruminococcus albus 8]
 gi|324108965|gb|EGC03196.1| threonine/alanine tRNA ligase second additional domain protein
           [Ruminococcus albus 8]
          Length = 383

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 39/293 (13%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +G+  E+  D++ F+ E GGQ GD G  + D +++  T  +K  E +    A +E G   
Sbjct: 24  AGKYYELTLDRSAFFPEGGGQKGDVG--LIDSVKVLDT-YEKNGEVVHKCTAPIEAG--- 77

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDV 621
             M +   +D   R +   NHS  HLL   +        +G H+  +   +  DG+    
Sbjct: 78  --MQVCGEVDADIRLRRMQNHSGEHLLMGVIHRKTGFENVGFHLGSDDVTLDLDGV---- 131

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                I +  L   E   N  IA +LPV     + E        + L  +  + VR+V++
Sbjct: 132 -----IPTETLIECEFLANKAIAADLPVTISYPDSESLKTLEYRSKL--EMTENVRIVTI 184

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           E    GV   A C   HV+STG+I ++ ++S  S + G  R+  + G  A   +  + ++
Sbjct: 185 E----GVDVCACC-APHVASTGQIGIIKVLSAESYKGGT-RLHILCGLDAFELIRNRMDE 238

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L +++  L         + E+I E+ ++  LI     L+  + D+   K A +
Sbjct: 239 LSAISRLLS-------AKPEKILEQTKR--LIDENDALKRQLADIEQRKAARI 282


>gi|213515028|ref|NP_001133686.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar]
 gi|209154936|gb|ACI33700.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar]
          Length = 408

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 156/364 (42%), Gaps = 40/364 (10%)

Query: 488 VSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
           V+S+V      GE+ +E ++G+K       V    T  + E GGQ  D G  IGD   L+
Sbjct: 15  VTSVVAC--SPGEMKQE-INGKKETVKGFNVRLQDTILFPEGGGQPDDHGL-IGDVPVLR 70

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +T  ++ AE +    + +E G       + L +D++ R      HS  HL+     ++ G
Sbjct: 71  VT--RQGAEAVHFVSSALEVG-----QEVQLKLDWERRFDHMQQHSGQHLVTAIAESMFG 123

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIA 661
              +          +  D    KP   A+++++E  VN+ I  ++PV  ++++ +D A+ 
Sbjct: 124 YKTTSWELGRQRSTIELDTPSMKP---AQMEALEAAVNEKIRAHVPVAVQVLSLDDPALE 180

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              +  L       +R++ +E  D       +C GTHVS+   + ++ ++     +    
Sbjct: 181 KVRSRGLPDDAAGPIRIIDIEGID-----VNMCCGTHVSNLSHLQVIKLLGTEKGKKNKT 235

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRK 778
            +  + G R   +        +SL S LK    + V  V++I +  + LQ   L   +  
Sbjct: 236 NLLFLVGNRVLKYAEKSYSTERSLVSLLKTGPDDHVDTVDKIQKTVKGLQKSNLGLLRDM 295

Query: 779 LQLNVEDLSCH-----------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             L  ++  C+           K  D  FMS I +E+ ++E    +   ++K   G+ +L
Sbjct: 296 AVLIAQNFKCNPERGNFFTLHKKEGDNEFMSIIANEIGTEETLVFLTVGEEK-GPGLFLL 354

Query: 828 VGIS 831
            G S
Sbjct: 355 AGPS 358


>gi|284172923|ref|YP_003406304.1| threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284017683|gb|ADB63631.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 239

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 27/228 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D T FY E GGQ  D G    DG    I DV+K    +  +   +E  +  +   + 
Sbjct: 28  LVLDGTYFYPEGGGQPADRGQLSWDGGSATIRDVRKNHGDVRHYVEAIEGTVPDSGTCIT 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ID Q R +L   H+A H++   +     +  +G+ V  + S I  +   FD T     
Sbjct: 88  GEIDAQRRERLRRMHTAQHVVSKVVLDMFDAATVGNQVHVDRSHIDFEPADFDAT----- 142

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSV 681
              ++ +IE   N I+  +  V      R +  A        T+++      D +RVV +
Sbjct: 143 ---DVATIERESNRIVDADFQVTKAERQRTEVEAETPEGR--TQFDQIPDSVDPLRVVEI 197

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           +  D        CGGTHV  TG I  +YI   SS +  +  IE   G+
Sbjct: 198 DTFD-----LCPCGGTHVDHTGAIGPIYITDRSS-KGDVESIEFELGE 239


>gi|86357404|ref|YP_469296.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
 gi|86281506|gb|ABC90569.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 253

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 15/204 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMS 570
           +  +QT FYA +GGQ GDTG     DG ++ +   +  A + + +H  +          +
Sbjct: 29  IELNQTCFYATSGGQPGDTGQLERADGTKIALGQTKHGAGKDVIIHVPLENEPRPEVGET 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           LVL +D+  R +L   H+A HL    LS I    ++  G+ +  +  R D   S+ I   
Sbjct: 89  LVLHVDWPRRYRLMRMHTACHL----LSVICSYPIT--GAAVGEEESRVDFDMSETIDKD 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGG 687
           E+ +    + +++ QN PV  + +  +D +A+    +        V   RV  V   +  
Sbjct: 143 EVTA---KLMELVGQNHPVYQQWIT-DDELAANPDIVKSKNVRPPVGLGRVSLVCIGENS 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIV 711
              S  CGGTHVS T E+  ++I 
Sbjct: 199 SIDSQPCGGTHVSETQEVGQIHIA 222


>gi|315181416|gb|ADT88329.1| Threonyl/alanyl tRNA synthetase SAD [Vibrio furnissii NCTC 11218]
          Length = 212

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 32/219 (14%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           + G +VE+  ++T FYAE+GGQ  DTG   G      I  ++ + +G  + + + +    
Sbjct: 22  LEGDQVEL--EETIFYAESGGQESDTGTIAG------IAVLKAEKQGRTIRYTLEQTPAF 73

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + + ID+  R QL   H A  L+         S+V + G+ I+ D  R D    +
Sbjct: 74  SVGEEVWVKIDWPRRYQLMKLHFAAELVLELFYQRF-SNVEKIGAHISQDKSRIDFYWPE 132

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            I    L S+ +  N +IAQ+ P+++   +                  +  R   VE   
Sbjct: 133 SIAPL-LPSVTEQANHLIAQDTPILSAFSDE----------------AEERRYWQVE--- 172

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               +   CGGTH+ STGE+  + +    +I  G  R+E
Sbjct: 173 --GFAKVPCGGTHLKSTGEVGPIRL-KRKNIGGGKERVE 208


>gi|255691526|ref|ZP_05415201.1| alanyl-tRNA synthetase family protein [Bacteroides finegoldii DSM
           17565]
 gi|260622917|gb|EEX45788.1| alanyl-tRNA synthetase family protein [Bacteroides finegoldii DSM
           17565]
          Length = 158

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N   I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIE+ VN+ I+QNLPV    M  E A      + L    ++ +R+V +     G 
Sbjct: 60  AEQIQSIENKVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEVGTFKIIS 138


>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074079|gb|ADJ63478.1| threonyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 68/131 (51%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVID-NGFYYDFSYKRPFTPEDLQAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  +++ R++A+A   +  +G  Y   +     + ED  +++    + LC G HV 
Sbjct: 130 KDEPVTRKVLPRDEAVAYFKS--IGEDYKAEIIASIPQNEDVSLYTEGSFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|224023759|ref|ZP_03642125.1| hypothetical protein BACCOPRO_00475 [Bacteroides coprophilus DSM
           18228]
 gi|224016981|gb|EEF74993.1| hypothetical protein BACCOPRO_00475 [Bacteroides coprophilus DSM
           18228]
          Length = 153

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 19/155 (12%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPIT 628
           ++  N+++    H+  H+++  +  + G      +H+ +  S       + D   S+  T
Sbjct: 7   LNEHNKQEYPPMHTCEHIVNRTMVNLFGCGRAVSAHIERKKS-------KLDFALSQAPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E++ IE  VN++IA++L V  + +++++A        L    +D VRVVSV     G 
Sbjct: 60  DEEIEQIEAKVNEVIARHLDVTVKFISQQEAAGQFDLKRLPEGASDTVRVVSV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   LC GTHV++T EI    I+S    + GI R+
Sbjct: 115 YDDCLCIGTHVANTSEIGTFKIISH-DYKDGIFRM 148


>gi|150396580|ref|YP_001327047.1| threonyl/alanyl tRNA synthetase SAD [Sinorhizobium medicae WSM419]
 gi|150028095|gb|ABR60212.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium medicae WSM419]
          Length = 249

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 33/210 (15%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLV 572
            DQT FYA +GGQ GD G     DG R+ I D +  A    + H   E   +      LV
Sbjct: 33  LDQTCFYATSGGQPGDKGFLEREDGSRIDIIDTRHGATKDIILHIPAEGARMPDVGEKLV 92

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTH---SKPIT 628
           L ID+  R +L   H+A HLL       I G+ V +  S +      FD++       +T
Sbjct: 93  LHIDWPRRYRLMRMHTACHLLSVVCPFPITGAAVGEEESRVD-----FDMSELIDKDQVT 147

Query: 629 SAELKSIEDN--------VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +A +K + +N         ++ +A N P + +  N    +  G  +L+    N  V    
Sbjct: 148 AALMKLVHENHPVYVQWITDEELAAN-PAIVKSKNVRPPMGLGRVSLVCIGENSSV---- 202

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
                     S  CGGTHVS T E+  ++I
Sbjct: 203 ---------DSQPCGGTHVSETQEVGAIHI 223


>gi|167587363|ref|ZP_02379751.1| threonyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 635

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L+ IE  + +I  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEKIEKRMQEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|88800056|ref|ZP_01115626.1| predicted metal-dependent Hydrolase [Reinekea sp. MED297]
 gi|88777182|gb|EAR08387.1| predicted metal-dependent Hydrolase [Reinekea sp. MED297]
          Length = 241

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 33/213 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE-GIFVHHAIVERGI--LRTEM 569
           V+ D T FYA +GGQ GDTG    DG+ +++ D +  A+    +H+   E  +   +T  
Sbjct: 29  VILDSTIFYALSGGQPGDTGELSADGLTVRVVDTRYDADRKTILHYLDPESPVPEWKTGQ 88

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCI-----TPDGLRFDVTH 623
            + + ID+  R +L   H+A HLL   +   + G  V +  S +     T D  + D++ 
Sbjct: 89  IIEMKIDWARRHRLMRMHTAMHLLCSLIPYPVTGGGVGERESRVEFDMDTADFDKADLSQ 148

Query: 624 --SKPIT---SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             ++ +T   S ++ SI D++ D    N P + R M+ +     G+  ++          
Sbjct: 149 KLNQLVTQNLSVDVSSITDDMLD----NNPELIRTMSVQPPRGQGSVRMINIGQG----- 199

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             ++Y+         CGGTHV  TGEI  L + 
Sbjct: 200 --IDYQP--------CGGTHVRETGEIGELVVT 222


>gi|326502278|dbj|BAJ95202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 257

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 15/222 (6%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI--- 564
           G +  VV D T F+ + GGQ  DTG  +    R  + DV+ K +G+  H+   E      
Sbjct: 39  GGRRAVVLDATIFHPQGGGQPADTGVIV-SAARFLVEDVRVK-DGVVFHYGRFEDADGEE 96

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    S+ + ID   R+  S  HSA HLL   + T LG H+        PDG   +    
Sbjct: 97  LSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCM-TNLGLHMEPGKGYHFPDGPFVEYKGV 155

Query: 625 KPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RVVSV 681
            P    +   I  E   N++I++   V+  +   E+A      AL      D   R+V  
Sbjct: 156 VPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALPSYISEDSTPRIVKF 215

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                G      CGGTHV+   +I  L  V+   ++ G+ ++
Sbjct: 216 -----GDCPGCPCGGTHVADITDIGNLK-VTNIRVKKGVTKV 251


>gi|326491881|dbj|BAJ98165.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 251

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 15/222 (6%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI--- 564
           G +  VV D T F+ + GGQ  DTG  +    R  + DV+ K +G+  H+   E      
Sbjct: 33  GGRRAVVLDATIFHPQGGGQPADTGVIV-SAARFLVEDVRVK-DGVVFHYGRFEDADGEE 90

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    S+ + ID   R+  S  HSA HLL   + T LG H+        PDG   +    
Sbjct: 91  LSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCM-TNLGLHMEPGKGYHFPDGPFVEYKGV 149

Query: 625 KPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RVVSV 681
            P    +   I  E   N++I++   V+  +   E+A      AL      D   R+V  
Sbjct: 150 VPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALPSYISEDSTPRIVKF 209

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                G      CGGTHV+   +I  L  V+   ++ G+ ++
Sbjct: 210 -----GDCPGCPCGGTHVADITDIGNLK-VTNIRVKKGVTKV 245


>gi|218883373|ref|YP_002427755.1| Threonyl/alanyl tRNA synthetase [Desulfurococcus kamchatkensis
           1221n]
 gi|218764989|gb|ACL10388.1| Threonyl/alanyl tRNA synthetase [Desulfurococcus kamchatkensis
           1221n]
          Length = 235

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 14/206 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +A+ G +V    D+T F+  +GG   DTG  + +   +++ +V    E   V H +    
Sbjct: 16  KAIKGSRV--FLDKTIFHPRSGGVENDTGYMVFNEGMVRVVNVYYDKESGDVAHEVDNAS 73

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           +L    S V L +D++ R +L   H+A H+L   + T   + ++  G  ITP+   +D  
Sbjct: 74  LLPQPGSSVKLVLDWERRYRLMRLHTAAHILSAIMYTNYNALIT--GGNITPE-YGYDDY 130

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVV 679
                +    +      N+++A+N+ V    + RE+A+       L +K     +++R+V
Sbjct: 131 SLTEFSREIFEEAVKKANEVVARNIEVKIYWLPREEALRIPGVVKLASKMPPEVEKLRIV 190

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI 705
            +     GV   A  GG HV STGEI
Sbjct: 191 EIP----GVDIQA-DGGPHVKSTGEI 211


>gi|237738264|ref|ZP_04568745.1| metal-dependent hydrolase [Fusobacterium mortiferum ATCC 9817]
 gi|229420144|gb|EEO35191.1| metal-dependent hydrolase [Fusobacterium mortiferum ATCC 9817]
          Length = 252

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 40/208 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQK--------------KAEGIFVH 556
           +VFD+T  Y E GGQ+GD+G  I +  +  ++  D  K              K EG+ +H
Sbjct: 28  LVFDKTIAYPEGGGQIGDSGILIREKTKEEIEFLDTTKIKGRNIYLEDFPVIKVEGVIIH 87

Query: 557 HA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITP 614
           H  I     L      ++ ++ + R + +++HS  HL    L+ +  G      G+ IT 
Sbjct: 88  HINISLLNNLELGEEFIIKLNVEKRAKTTLHHSGLHLALMILANMREGIDKKIVGAKITD 147

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              R D +  +  +  EL+ IED  N++I + L +               ++   T  N+
Sbjct: 148 TYGRLDFSTEEKFSKEELQKIEDKCNELIQEKLEI---------------SSYHHTVENE 192

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +    ++Y       S  CGGTH  +T
Sbjct: 193 AIYWKCLDY-------SVPCGGTHCDNT 213


>gi|171058428|ref|YP_001790777.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|238689097|sp|B1XYZ3|SYT_LEPCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170775873|gb|ACB34012.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 637

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + D+ A
Sbjct: 75  IRHSTAHLLAYAVKELFPDAQVTIGPTIE-NGFFYDFSYKRPFTPDDLAAIEKKMGDLAA 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++ PVV  +M R++A++   +  +G  Y   +       + VS+ Y +G    + LC G 
Sbjct: 134 KDEPVVRSVMPRDEAVSYFKS--IGEAYKAEIIESIPADQAVSL-YAEGKF--TDLCRGP 188

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++    ++
Sbjct: 189 HVPSTGKLKFFKLM 202


>gi|167570156|ref|ZP_02363030.1| threonyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 635

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L+ IE  + +++ 
Sbjct: 71  IRHSTAHLLAYAVKDLYPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEKIEKRMQELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A++   +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDEAVSYFRS--IGEKYKAEI-IESIPASDEIKLYAHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|229185856|ref|ZP_04313029.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BGSC 6E1]
 gi|228597568|gb|EEK55215.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BGSC 6E1]
          Length = 411

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 172/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG      + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETAFYPTGGGQPHDTGTLNSIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKGV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAMMSGDEFLNQLISSLQ 408


>gi|167562968|ref|ZP_02355884.1| threonyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 635

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L+ IE  + +++ 
Sbjct: 71  IRHSTAHLLAYAVKDLYPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEKIEKRMQELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A++   +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDEAVSYFRS--IGEKYKAEI-IESIPASDEIKLYAHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|241764278|ref|ZP_04762308.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366347|gb|EER60877.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 639

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ P+  R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPIARRVLPRDEAVAYFKG--LGENYKAEIIASIPSNEDVSLYREGRFEDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++    ++
Sbjct: 188 STGKLKFFKLM 198


>gi|20090862|ref|NP_616937.1| alanyl-tRNA synthetase domain-containing protein [Methanosarcina
           acetivorans C2A]
 gi|74551374|sp|Q8TPA0|ALAXM_METAC RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|19915934|gb|AAM05417.1| alanyl-tRNA synthetase domain protein [Methanosarcina acetivorans
           C2A]
          Length = 245

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 30/225 (13%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGI 553
           +++ E + E V+  K  VV D+T FY E+GGQ  DTG  +   DG   ++  V  K  G 
Sbjct: 12  LREFEAIVEKVTDDKY-VVLDRTAFYPESGGQPSDTGKLVREEDGAEFEVVYVG-KFNGD 69

Query: 554 FVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             H      G     L+    +   ID+  R +    H+ATH++ + +    G+ ++ N 
Sbjct: 70  ISHEITPVDGNAALGLKAGDRVRGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQ 129

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---------I 660
             +    + F +        AE + I    N +I +N PV   +++R++A         +
Sbjct: 130 LGLDKSRVDFSLEAFDRDKFAEYEKI---ANKVITENHPVNLYLVSRKEAEEKLSRLTTL 186

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           A G +  +       VR+V +E    G+   A CGGTH+ +TGEI
Sbjct: 187 AKGFSEEIS-----EVRLVEIE----GITIEA-CGGTHLKNTGEI 221


>gi|91776355|ref|YP_546111.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
 gi|123254150|sp|Q1GZR7|SYT_METFK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91710342|gb|ABE50270.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
          Length = 635

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  I  +G  +D ++ +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAQAVKQLFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLQKIEARMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +++P+V  +M R++A+A   +  +G +Y   +       + +S+  +D     + LC GT
Sbjct: 130 RDIPIVRTVMERDEAVAYFQS--IGEQYKAEIIGSIPADQEISLYTQDD---FTDLCRGT 184

Query: 698 HVSSTGEI 705
           HV STG++
Sbjct: 185 HVPSTGKL 192


>gi|229031279|ref|ZP_04187285.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1271]
 gi|228730037|gb|EEL81011.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1271]
          Length = 411

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 36/259 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG  + D   + + ++  +     + H IVE+  L TE  + 
Sbjct: 43  VILNETAFYPTGGGQPYDTGT-LNDIDVINVEEINGE-----IRHFIVEQ--LHTE-EVK 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  D  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LETDNLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+ T  +N E+A              + +RVV +E ++ 
Sbjct: 150 VEKAAQIA-----NKIVFENHPIRTLWVNLEEA--KTLPLRKEPTLTENIRVVIIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIIKD 254

Query: 745 LASFLKVSQGNVVGRVEEI 763
           ++  L  S+ ++  +V ++
Sbjct: 255 VSQQLNSSENDIPAKVAQL 273


>gi|239933643|ref|ZP_04690596.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 252

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M   +A   GA AL    Y ++VRVV +    GG  S  LCGGTHV    +I  + + 
Sbjct: 2   RWMTLPEAKELGALALFDETYGEKVRVVEI----GGAWSRELCGGTHVEHASQIGTVVLT 57

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           SESS+ AG+ R+EA  G     +L  + + +  +A  L+  +  +
Sbjct: 58  SESSVGAGMCRLEAAVGIEGFGYLARERDPVTRIAEQLQAPRAEL 102


>gi|261368157|ref|ZP_05981040.1| alanyl-tRNA synthetase [Subdoligranulum variabile DSM 15176]
 gi|282569921|gb|EFB75456.1| alanyl-tRNA synthetase [Subdoligranulum variabile DSM 15176]
          Length = 383

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 113/265 (42%), Gaps = 33/265 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T F+ E GGQ  DTG  +GD   L +       +G  + H       L    ++ 
Sbjct: 31  VVLDRTAFFPEGGGQPCDTG-RLGDARVLAV-----HTDGETITH--TTDAPLPVGAAVE 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R      H+  H+L   L  + G+     G  I    +R D   S P+T+ +L
Sbjct: 83  GILDWAARLDAMQQHTGEHILSGTLHRLYGAE--NVGFHIGSPYVRMDT--SIPLTAEQL 138

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVSVEYEDG 686
            + E   N  +  + PV   + +        AA L  T+Y  +      VR+V    E G
Sbjct: 139 AAAEAQANAAVRADTPVHCYVPD--------AATLAATEYRSKKELEGPVRLV----EAG 186

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   +  C GTH++ TGE+ L+ I+S    + G+ R+    GQRA   +       +S  
Sbjct: 187 GDRCA--CCGTHLARTGEVGLIKIISAQHYKVGM-RLAVACGQRAYDAVAAGWADAESAG 243

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQ 771
             L V  G++ G    + E   KL+
Sbjct: 244 RLLSVPVGSLTGAAGRLREAEAKLK 268


>gi|217077247|ref|YP_002334965.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037102|gb|ACJ75624.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 366

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 131/299 (43%), Gaps = 42/299 (14%)

Query: 502 VEEAVSGQ-KVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +EE +  + K+  +  ++PFY +  GGQLGD G  IG+   L +     K     ++H I
Sbjct: 5   IEEVLKEKGKIFAISSESPFYVDYKGGQLGDRG-KIGNASVLSVMSKNGK-----IYHEI 58

Query: 560 ---VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              V+ G              +N  ++ +NH      HH    IL S V +  + I+  G
Sbjct: 59  DREVDLG--------------ENDVEIDLNHQLFVRQHHTGQHIL-SAVFEELADISTVG 103

Query: 617 LR--FDVT----HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            R  F+ T    +   I    L  +E+ VN II + + V   ++ +E+         L  
Sbjct: 104 FRMGFEYTTIDLNVPYIVEELLDEVEERVNSIITECVDVQEILVEKEEVDRFPLRKKLSD 163

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           K    VR++ +     G +  + CGG HV +TG+I LL I+    ++  + R+  + G +
Sbjct: 164 KVEGMVRIIKI-----GEYDYSPCGGYHVKNTGQIGLLKILKTEKVKGELTRVYFVAGFK 218

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           A  +     + LK+++  L  S   V  +V  +  E ++        +L+   E L+C+
Sbjct: 219 AMEYFRKYSKILKNISVSLTSSIFEVEDKVRSLLSEVKE-----KSSRLENLAEKLACY 272


>gi|153806680|ref|ZP_01959348.1| hypothetical protein BACCAC_00950 [Bacteroides caccae ATCC 43185]
 gi|149131357|gb|EDM22563.1| hypothetical protein BACCAC_00950 [Bacteroides caccae ATCC 43185]
          Length = 155

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N   I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSSPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + ++++IE+ VN++I QNLPV    M  E A      + L    ++ +R++ +     G 
Sbjct: 60  AEQIQAIENKVNEVINQNLPVTIEFMTHEQAKNIVDLSKLPKDASETLRIIRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS T E+ +  I+S
Sbjct: 115 YDACACIGAHVSHTSEVGIFKIIS 138


>gi|160899658|ref|YP_001565240.1| threonyl/alanyl tRNA synthetase SAD [Delftia acidovorans SPH-1]
 gi|160365242|gb|ABX36855.1| Threonyl/alanyl tRNA synthetase SAD [Delftia acidovorans SPH-1]
          Length = 236

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 26/220 (11%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEG 552
           A + + E    AVS + VE+  D T  YA +GGQ GDTG   + DG  L + D     + 
Sbjct: 12  AYLDRCEATVTAVSAEGVEL--DATVCYARSGGQAGDTGTLTLADGRSLALIDTVYADDR 69

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             + H +      +    + + ID+  R +L   H+  HLL   +       V   G  I
Sbjct: 70  QRILHVLQTDAPPQVGERVQVAIDWDRRHRLMRLHTCLHLLGVLVP------VPVTGCSI 123

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAI------ASGAA 665
           +PD  R D     P ++ +   + + +N +I  +  V V RI   + A        +GAA
Sbjct: 124 SPDSARLDF--DLPESTLDKTDLTERLNALITASHAVNVDRITPEQLAAQPDLVRTAGAA 181

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              GT     +R++ +   D        CGGTHV ST EI
Sbjct: 182 PPGGTS---TIRIIDIPGLD-----RQPCGGTHVRSTAEI 213


>gi|330816669|ref|YP_004360374.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327369062|gb|AEA60418.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 635

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++S+P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVID-NGFYYDFSYSRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++RE+A        +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSREEAAEYFRG--IGEKYKAEI-IESIPSSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|190891467|ref|YP_001978009.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|190696746|gb|ACE90831.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 245

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 17/204 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMS 570
           +  DQT FYA +GGQ GDTG     DG ++ +   +  A + I +H  +          +
Sbjct: 29  IELDQTCFYATSGGQPGDTGQLERADGSKIALGQTKHGASKDIIIHVPLENEPQPEIGET 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           LVL +D+  R +L   H+A HLL    S  I G+ V +  S       R D   S+ I  
Sbjct: 89  LVLHVDWPRRYRLMRMHTACHLLSVICSYPITGAAVGEEES-------RIDFDMSETIDK 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDG 686
            E+ +    + +++ QN PV  + +  +D +A+    +        +   RV  V     
Sbjct: 142 DEVTA---RLMELVGQNHPVYLQWIT-DDELAANPDIVKSKNVRPPMGLGRVSLVCIGKN 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI 710
               S  CGGTHVS T E+  ++I
Sbjct: 198 SSIDSQPCGGTHVSETQEVGQVHI 221


>gi|313905304|ref|ZP_07838671.1| Threonyl/alanyl tRNA synthetase SAD [Eubacterium cellulosolvens 6]
 gi|313469915|gb|EFR65250.1| Threonyl/alanyl tRNA synthetase SAD [Eubacterium cellulosolvens 6]
          Length = 409

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 151/367 (41%), Gaps = 34/367 (9%)

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEMSLVLTID 576
           FY E GGQ GD G      D   + + D +++ + I ++    VE G       ++  +D
Sbjct: 43  FYPEGGGQPGDRGTLTYGTDMKTVHVLDTKRQGQDIVLYTDEPVEEGT-----QVLQQLD 97

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           ++ R      HS  H+    +    G     N      D +R D   + P+T  ++  +E
Sbjct: 98  WEFRFSNMQGHSGEHIFSGIVHRKFGY---DNVGFHMGDTIRVDF--NGPLTWEQILEVE 152

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  + +N P+   I    +A  +        +   ++R+V++   D        C G
Sbjct: 153 NEANRYVWKNEPI--EITVGSEAEVADIDFRSKKELEGKIRLVTIPGAD-----VCACCG 205

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV  TGEI ++  +S  S + G+ R+E + G +A S+L G + +   +A  L V     
Sbjct: 206 LHVRRTGEIGMIKCISAQSYKGGV-RLELLCGAKALSYLQGIESQNSQIARDLSVKPEET 264

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKS 811
              VE +     +  L+  K+K   N+      +IA+++      +     E+   +++ 
Sbjct: 265 ALAVERL-----RNDLMEEKQKAAANMNRYFRARIAELHTDDGGVVIDFEKEMSVTDIRR 319

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGG 869
             D + K+  + +  ++     + A+     T    D    N  + A+   + L G GGG
Sbjct: 320 FCDWILKQGAAKVACVLAPRDPEDAAAGWNYTIGTTDAVVCNLREKAKEFNEALNGRGGG 379

Query: 870 GRPHMAQ 876
             P M Q
Sbjct: 380 S-PEMIQ 385


>gi|206559848|ref|YP_002230612.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|238693072|sp|B4E7I6|SYT_BURCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198035889|emb|CAR51780.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 635

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|105892737|gb|ABF75902.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia AU 1054]
 gi|116647586|gb|ABK08227.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia HI2424]
          Length = 618

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 54  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELAK 112

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 113 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 167

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 168 HVPSTGKLKVFKLM 181


>gi|162218055|ref|YP_620875.2| threonyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|162227933|ref|YP_835120.2| threonyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|254245609|ref|ZP_04938930.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
 gi|124870385|gb|EAY62101.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
          Length = 635

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|170732802|ref|YP_001764749.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|238688618|sp|B1K091|SYT_BURCC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169816044|gb|ACA90627.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 635

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|325528727|gb|EGD05797.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 635

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|255942495|ref|XP_002562016.1| Pc18g01720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586749|emb|CAP94396.1| Pc18g01720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 264

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 27/229 (11%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHA--IVE 561
           V  +   +   QT FYA+ GGQ  DTG    +      +++ V+K  +G F+H    +  
Sbjct: 42  VPAEDNAITMRQTIFYAQGGGQPSDTGAIGPVDQDPTFEVSAVRKTPDGRFLHFGKFLDA 101

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-------GSHVSQNGSCITP 614
                   S+V  +D   R   S  H+A H++  A+  ++        +H  +  S +  
Sbjct: 102 TSSFVVGQSVVQKVDDSKRNYHSRLHTAGHIVGLAMQLLMPEKKKVKANHFPREAS-MEY 160

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           +GL ++    KP+       I++ V++++  +LP++   +     +  G  A  G  ++ 
Sbjct: 161 EGLLYN--EHKPV-------IQEKVDELVRLDLPILISWLQGGALVGDGEGAEEGRSHDG 211

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R R+ S+    GG+  +  CGGTHV+ T  ++   ++ + S + GI R+
Sbjct: 212 RTRIASI----GGLDHNP-CGGTHVART-SLVGSVVIRKISRQKGISRV 254


>gi|291459972|ref|ZP_06599362.1| putative alanyl-tRNA synthetase [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417313|gb|EFE91032.1| putative alanyl-tRNA synthetase [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 460

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 27/287 (9%)

Query: 465 GSKFMKEDRKVLCQKPPI-DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT----P 519
           G + MK D  +  ++PPI D T  +  +  +  Q+  +V + + G+++  ++        
Sbjct: 23  GREEMKRD-ALYYERPPIGDFTAELLELRASTEQEKRLVSQRL-GRELSSLYTAKLFPEG 80

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ  D G  +G+   L   + +    G  +H+  ++R ++       L +D+  
Sbjct: 81  FYPEGGGQSADRG-KVGEAELLYALEEK----GEVLHY--LDRELMPGTYPCRLDLDF-- 131

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR+ + +HS  H++   +    G H    G  +  DGL   +     IT  EL+ +E   
Sbjct: 132 RRRNTQSHSGEHIVSGIVHRRFGYH--NVGFHMGKDGL-LTIDFDGRITEEELRELEKLS 188

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  + +N PV     +RE+   S        + ++ VR+V +E    GV   A CG T V
Sbjct: 189 NLAVWENHPVRILYPDREEL--SRLDYRSKKELSETVRLVEIE----GVDLCACCG-TQV 241

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             +GEI L+ + S +S R G  RIE   G+ A S L+ ++E LK  A
Sbjct: 242 EQSGEIGLIRLYSVTSRREGC-RIEMRAGESALSDLIRKEEVLKRCA 287


>gi|189465580|ref|ZP_03014365.1| hypothetical protein BACINT_01938 [Bacteroides intestinalis DSM
           17393]
 gi|189437854|gb|EDV06839.1| hypothetical protein BACINT_01938 [Bacteroides intestinalis DSM
           17393]
          Length = 157

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S +   I     + D +     T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTCEHIVNRTMMNLFGCGRSVSAH-IERKKSKLDYSLETAPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++K +E+ VND+IAQ L V T  + +E+A        L    ++ VR+V V     G 
Sbjct: 60  EEDVKRLEEAVNDVIAQGLDVTTEFITQEEAQGRFDLKRLPEDASETVRIVKV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           +   LC GTHV +T EI +  ++S
Sbjct: 115 YDECLCLGTHVKNTSEIGIFKVIS 138


>gi|196044606|ref|ZP_03111841.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB108]
 gi|225865605|ref|YP_002750983.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB102]
 gi|196024641|gb|EDX63313.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB108]
 gi|225788966|gb|ACO29183.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB102]
          Length = 400

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 172/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG      + L + +V ++     + H I E+  L TE  + 
Sbjct: 32  VILNETAFYPTGGGQPHDTGTLNSIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 139

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 140 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDYN 192

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 193 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDV 244

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 245 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 304

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 305 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 361

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 362 PTIEGKGGGNKKS-ARGGGKAIMSGDEFLNQLISSLQ 397


>gi|229075515|ref|ZP_04208503.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-18]
 gi|228707611|gb|EEL59796.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-18]
          Length = 411

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 30/256 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G      +T+V++    I   H I E+  L T   + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGTLNGT----LVTNVEEVNGEI--RHFIAEQ--LET-AEVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDV-THSKPITS 629
             I+++ R     +H   H   H LS     H  +   G  +  + +  D+ T + P  +
Sbjct: 94  GKINWERR----FDHMQQHAAQHILSAAFWDHFNIPTIGFHLGKETVTIDLETENLPAET 149

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGV 688
            E K+++   N+I+ +N P+  + MN E+A              + +RVV +E ++  G 
Sbjct: 150 IE-KAVQI-ANNIVFENHPIRIQWMNLEEA--KTLPLRKEPTLTENIRVVIIENFDYNG- 204

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLAS 747
                CGGTH   TGE+ L+ +++    + GI R+  I G R    LMGQ ++ +K ++ 
Sbjct: 205 -----CGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDVSK 257

Query: 748 FLKVSQGNVVGRVEEI 763
            L  S+ ++  +V ++
Sbjct: 258 QLNSSETDIPAKVAQL 273


>gi|228966520|ref|ZP_04127573.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793242|gb|EEM40792.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 408

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 173/382 (45%), Gaps = 49/382 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + + DV++  + I   H I E+  L TE  + 
Sbjct: 40  VVSNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVNDEI--RHFITEQ--LHTE-EVE 90

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 91  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LETENLHAET 146

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+ T  MN E+A              + +RVV +E ++ 
Sbjct: 147 VEEAVQIA-----NKIVFENHPIRTLWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDY 199

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 200 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIIKD 251

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FM 797
           ++  L  S+ ++  +V ++     E  + +Q ++ K  L     +L   + A+++    +
Sbjct: 252 VSKQLNSSEIDIPTKVAQLLTSQKENEKAIQTMNEKL-LYAEANEL-LQQPAEIHASILI 309

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           S + +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L +
Sbjct: 310 SQVFTNRSMQEIAKLSAIITEQQEHAITYFV-IQNEDKLQCILACGKSITLDMNA--LLK 366

Query: 858 LSAKVLGGGGGGGRPHMAQSGG 879
            +   + G GGG +   A+ GG
Sbjct: 367 EALPTIDGKGGGNKKS-ARGGG 387


>gi|238564835|ref|XP_002385735.1| hypothetical protein MPER_16299 [Moniliophthora perniciosa FA553]
 gi|215435605|gb|EEB86665.1| hypothetical protein MPER_16299 [Moniliophthora perniciosa FA553]
          Length = 80

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 33/52 (63%)

Query: 5  SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP 56
          S +R  F  +F+   H L+PSSS IP +DPTL+F N+GM  +K IF G   P
Sbjct: 14 SKVRDEFFNYFRSREHTLVPSSSTIPYDDPTLLFANAGMNQYKAIFLGTVDP 65


>gi|229098065|ref|ZP_04229013.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-29]
 gi|228685256|gb|EEL39186.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-29]
          Length = 411

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 34/273 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G      +T+V++    I   H I E+  L T   + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGTLNGT----LVTNVEEVNGEI--RHFIAEQ--LET-AEVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDV-THSKPITS 629
             I+++ R     +H   H   H LS     H  +   G  +  + +  D+ T + P  +
Sbjct: 94  GKINWERR----FDHMQQHAAQHILSAAFWDHFNIPTIGFHLGKETVTIDLETENLPAET 149

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGV 688
            E K+++   N+I+ +N P+  + MN E+A              + +RVV +E ++  G 
Sbjct: 150 IE-KAVQI-ANNIVFENHPIRIQWMNLEEA--KTLPLRKEPTLTENIRVVIIENFDYNG- 204

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLAS 747
                CGGTH   TGE+ L+ +++    + GI R+  I G R    LMGQ ++ +K ++ 
Sbjct: 205 -----CGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDVSK 257

Query: 748 FLKVSQGNVVGRVEEIW----EEYRKLQLIHAK 776
            L  S+ ++  +V ++     E  + +Q I+ K
Sbjct: 258 QLNSSETDIPAKVAQLLISQKENEKAIQTINEK 290


>gi|229117082|ref|ZP_04246462.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-3]
 gi|228666371|gb|EEL21833.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-3]
          Length = 411

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 30/256 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G      +T+V++    I   H I E+  L T   + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGTLNGT----LVTNVEEVNGEI--RHFIAEQ--LET-AEVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCITPDGLRFDV-THSKPITS 629
             I+++ R     +H   H   H LS     H  +   G  +  + +  D+ T + P  +
Sbjct: 94  GKINWERR----FDHMQQHAAQHILSAAFWDHFNIPTIGFHLGKETVTIDLETENLPAET 149

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGV 688
            E K+++   N+I+ +N P+  + MN E+A              + +RVV +E ++  G 
Sbjct: 150 IE-KAVQI-ANNIVFENHPIRIQWMNLEEA--KTLPLRKEPTLTENIRVVIIENFDYNG- 204

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLAS 747
                CGGTH   TGE+ L+ +++    + GI R+  I G R    LMGQ ++ +K ++ 
Sbjct: 205 -----CGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKDVSK 257

Query: 748 FLKVSQGNVVGRVEEI 763
            L  S+ ++  +V ++
Sbjct: 258 QLNSSETDIPAKVAQL 273


>gi|86160636|ref|YP_467421.1| threonyl/alanyl tRNA synthetase, SAD [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777147|gb|ABC83984.1| Threonyl/alanyl tRNA synthetase, SAD [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 408

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 22/227 (9%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  VV D+T FY E GGQ  D G   G      + DVQ + +G  +H   +E        
Sbjct: 28  RPAVVLDRTAFYPEGGGQPADRGRLGG----AAVVDVQ-EVDGEVLH--ALEGAPPDAGA 80

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ----NGSCITPDGLRFDVTHSK 625
            +   +D   RR     H   HLL  A     G+H         +C     +  D   + 
Sbjct: 81  PVPGEVDAVRRRDHLQQHHGQHLLSAAFEATAGAHTVSFHLGAETCT----IDLDAAPAS 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYE 684
            +    L++ E   ND++ ++LPV  R      A A  AA  L        R+V V +  
Sbjct: 137 -LGEERLRAAEARANDLVFRDLPVTARDF----APAELAALPLRKAPEKGARIVVVGDPA 191

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            G V  ++ CGGTH   TG +  + ++       G  R+E + G RA
Sbjct: 192 RGEVVDASPCGGTHPRRTGAVGAIAVLGAQRWGGGT-RVEFVCGARA 237


>gi|47567906|ref|ZP_00238613.1| alanyl-tRNA synthetase-related protein [Bacillus cereus G9241]
 gi|47555384|gb|EAL13728.1| alanyl-tRNA synthetase-related protein [Bacillus cereus G9241]
          Length = 411

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 172/398 (43%), Gaps = 45/398 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + +  V++  E I   H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----ITVFGVEEVNEEI--RHFITEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSASFWDHFNIPTI-GFHLGR--ETVTID-LETENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N+I+ +N P+    M+ E+A              + +RVV +E ++ 
Sbjct: 150 VEKAVQIA-----NNIVFENHPIHIEWMDLEEA--KTLPLRKEPNMTENIRVVMIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K +
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSH 799
           +  L  S+ ++  +V ++     E  + +Q ++ K  L     +L     KI     +S 
Sbjct: 256 SKQLNSSESDIPAKVAQLLTSQKENEKTIQTMNEKL-LYAEANELLQQPAKIHASILISK 314

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           + +    +E+ S + A+  + Q   I    I  E K   ++   + +    NA+    L 
Sbjct: 315 VFTNRSMQEI-SKLSAIITEQQEHAITYFIIENEDKLQCILACGKTVTLDMNALLKDALP 373

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A     G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AI---EGKGGGNKKSARGGGKAIMTGDEFLNQLISSLQ 408


>gi|14521955|ref|NP_127432.1| alanyl-tRNA synthetase related protein (fragment) [Pyrococcus
           abyssi GE5]
 gi|5459175|emb|CAB50661.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 405

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 110/259 (42%), Gaps = 26/259 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +I +  + G K+EV   +T FY   GGQ GD G   GDG  + + D  ++ +G   H 
Sbjct: 16  KAKISDLTIKGDKIEVSLTETIFYPRGGGQPGDKGKIRGDGFEIIVEDTVER-DGEIWHV 74

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +          + L +D++ R      H+  H+L   L       +  +G  I  D  
Sbjct: 75  GKLNGRTPEVGEEVELELDWEWRYGNMQMHTGQHILSAVLKK--RYDLDTSGFNIFGDYA 132

Query: 618 RFDVT---HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-- 672
           + +V    + + I  AEL++     N +I  +LPV  R+   E  +  G    L  KY  
Sbjct: 133 KIEVNGELNWEMIEEAELEA-----NKVIIDDLPV--RVEEYE-VLPKGVVEKL-RKYIP 183

Query: 673 --NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
               ++R+V +    G       CGGTHV ST E+ ++ ++          RIE   G R
Sbjct: 184 NIKGKIRIVRI----GENFDLTPCGGTHVKSTREVGVIKVLRFYKKSKDTWRIEFTCGFR 239

Query: 731 ARSHLMGQDEKLKSLASFL 749
           A   L   +E LK   S L
Sbjct: 240 AIKKL---NEILKDYWSAL 255


>gi|326941340|gb|AEA17236.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 400

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 182/401 (45%), Gaps = 51/401 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 32  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 82

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 139 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDY 191

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 192 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 243

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNF 796
           ++  L  S+ ++  +V ++     E  + +Q ++ K       +L ++ +  H  AD+  
Sbjct: 244 VSKQLNSSETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIH--ADI-L 300

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +S + +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L 
Sbjct: 301 ISKVFTNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LL 357

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + +   + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 358 KDALPTIEGKGGGNKKS-ARGGGKAIMSGDEFLNQLVSSLQ 397


>gi|118478861|ref|YP_896012.1| alanine--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|118418086|gb|ABK86505.1| alanine--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 411

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 172/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY   GGQ  DTG      + L + +V ++     + H I E+  L TE  + 
Sbjct: 43  VILNETAFYPTGGGQPHDTGTLNSIAV-LGVEEVDEE-----IRHFIAEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A         N I+ +N P++ + MN E+A              + +RVV +E ++  
Sbjct: 151 EKAV-----QIANKIVFENHPILIKWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKGV 255

Query: 746 ASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
           +  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S +
Sbjct: 256 SKQLNSSEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + + 
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEAL 372

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 373 PTIEGKGGGNKKS-ARGGGKAIMSGDEFLNQLISSLQ 408


>gi|254785570|ref|YP_003072999.1| threonyl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259516754|sp|C5BSQ1|SYT_TERTT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237684404|gb|ACR11668.1| threonine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 637

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+ ++        G  I  DG  +D  +S+  T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAQAVKSLFPEAQVTIGPVID-DGFYYDFAYSRAFTPEDLAAIEKKMTELSE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q++PV  R++ R++A+A      +G  Y   +       ED  ++       LC G HV 
Sbjct: 130 QDIPVSRRVLPRDEAVAFFRG--IGEDYKAEIIESIPANEDLSLYKQGDFEDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|228940707|ref|ZP_04103270.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973626|ref|ZP_04134208.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980184|ref|ZP_04140498.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis Bt407]
 gi|228779542|gb|EEM27795.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis Bt407]
 gi|228786087|gb|EEM34084.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818951|gb|EEM65013.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 411

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 182/401 (45%), Gaps = 51/401 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 150 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KTLPLRKEPTMTENIRVVIIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNF 796
           ++  L  S+ ++  +V ++     E  + +Q ++ K       +L ++ +  H  AD+  
Sbjct: 255 VSKQLNSSETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIH--ADI-L 311

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +S + +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L 
Sbjct: 312 ISKVFTNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LL 368

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + +   + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 369 KDALPTIEGKGGGNKKS-ARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|153811258|ref|ZP_01963926.1| hypothetical protein RUMOBE_01650 [Ruminococcus obeum ATCC 29174]
 gi|149832756|gb|EDM87840.1| hypothetical protein RUMOBE_01650 [Ruminococcus obeum ATCC 29174]
          Length = 383

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 25/273 (9%)

Query: 502 VEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V E   G+K  E++ DQT FY E GGQ  D G  + D   +++ +V +K +G  +H+   
Sbjct: 21  VLECREGKKGYEIILDQTAFYPEGGGQPYDLG-ILND---VEVLEVHEK-DGEIIHYT-- 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
            +  +     +   ID+  R  L   HS  H++   +    G      G  ++ D +  D
Sbjct: 74  -KEAIEAGSDVTGKIDWHRRFDLMQQHSGEHIVSGLVHEAYG--YDNVGFHMSSDVITVD 130

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE--DAIASGAAALLGTKYNDRVRV 678
           +  S  ++ A+L  IE   N  I +N  V     +RE  D +   +   L      +VR+
Sbjct: 131 L--SGVLSEAQLAEIEVETNRKIWENSEVEITYPSREELDKLDYRSKKEL----TGQVRL 184

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V     D        C GTHV+ TGEI  + I++  +   GI R+  I G+R   +L   
Sbjct: 185 VRFPGSD-----LCACCGTHVTHTGEIGAVKILTVENFHEGI-RLTMICGKRVMDYLNMV 238

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +++ + ++  L    G     V  + +E  +L+
Sbjct: 239 NDQNRQVSMKLSAKIGETAAAVARLQDENFRLK 271


>gi|119897370|ref|YP_932583.1| threonyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|166223320|sp|A1K4E1|SYT_AZOSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119669783|emb|CAL93696.1| ThrS protein [Azoarcus sp. BH72]
          Length = 638

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D ++ +P T  +L++IE  + +++ 
Sbjct: 71  IRHSTAHLLAHAVKELFPEAQVTIGPVIE-NGFYYDFSYKRPFTPEDLEAIEKRMAELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           + LPV   +  R+ A+A   +  +G  Y   +       ED  ++       LC G HV 
Sbjct: 130 RELPVEREVWPRDKAVAFFKS--IGEHYKAEIIASIPANEDVSLYRQGEFVDLCRGPHVP 187

Query: 701 STGEIMLL 708
           STG + + 
Sbjct: 188 STGRLKVF 195


>gi|134295547|ref|YP_001119282.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166223329|sp|A4JDU4|SYT_BURVG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134138704|gb|ABO54447.1| Ser-tRNA(Thr) hydrolase [Burkholderia vietnamiensis G4]
          Length = 635

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPEAQVTIGPVID-NGFYYDFAYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPQSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|229162453|ref|ZP_04290414.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus R309803]
 gi|228620932|gb|EEK77797.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus R309803]
          Length = 411

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 165/386 (42%), Gaps = 57/386 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV +++ FY   GGQ  DTG  + D   + + ++  +     + H IVE+  L TE  + 
Sbjct: 43  VVLNESAFYPTGGGQPYDTGT-LNDIDVINVEEINGE-----IRHLIVEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LETENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N I+ +N P+    MN E+A              + +RVV +E Y+ 
Sbjct: 150 VEKAVQIA-----NKIVFENHPIRIEWMNLEEA--KTLPLRKEPNMTENIRVVIIENYDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEIWEEYR-----------KLQLIHAKRKLQLNVEDLSCHKIAD 793
           ++  L  S+ ++  +V ++    +           KL    A   LQ ++E  +   I+ 
Sbjct: 255 VSKQLNSSETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQSIEIHAGLLISK 314

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
             F +  + E+      + + A+  + Q   I    I  E K   ++   + +    NA+
Sbjct: 315 A-FTNRSMQEI------AKLSAIITEQQEHAITYFVIENEDKLQCILACGKTITLDMNAL 367

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGG 879
               L A     G GGG    A+ GG
Sbjct: 368 LKNALPAI---EGKGGGNKKSARGGG 390


>gi|83953684|ref|ZP_00962405.1| hypothetical protein NAS141_05653 [Sulfitobacter sp. NAS-14.1]
 gi|83841629|gb|EAP80798.1| hypothetical protein NAS141_05653 [Sulfitobacter sp. NAS-14.1]
          Length = 239

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 17/217 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T FY   GGQ GD+G    D  R+ I    K  +G  +        I +    + 
Sbjct: 28  IVLDRTVFYPTGGGQPGDSGWLNWDKQRMPIATTVKGLDGSIILVPAEPEEIPQPGTHVT 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R +    H   H L H LS ++   V       T   L FD+  +      + 
Sbjct: 88  QKLDWDRRHR----HMRVHSLLHLLSVVVPFPVVGGQISATHGRLDFDLADA----PEDR 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASG------AAALLGTKYNDRVRVVSVEYEDG 686
             IED +   IAQ+LP+    + +E+  A+       + A   T  N  VR+V +   D 
Sbjct: 140 DGIEDALASYIAQDLPITDHWITQEELQAAPELVKTLSVAPPVTAAN--VRLVQIGEGDA 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     CGGTHV+ TGEI  + +        G RRI
Sbjct: 198 WIDLQP-CGGTHVARTGEIGAVRLGKIEKKGRGTRRI 233


>gi|117923678|ref|YP_864295.1| threonyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|259516564|sp|A0L4J6|SYT_MAGSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117607434|gb|ABK42889.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Magnetococcus
           sp. MC-1]
          Length = 648

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA+HL+  A+ T+        G  I  +G  +D  + +P T  +L +IE+ +  +  
Sbjct: 72  IRHSASHLMAQAVKTLFPQAQVTIGPAIE-NGFYYDFDYERPFTPDDLTAIENCMRKLAK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N  V  R+M R++A+A   A  +G  Y   +       ED  ++S      LC G HV 
Sbjct: 131 RNEKVERRVMPRDEAVAYFQA--MGELYKAEIIGAIPAGEDVSLYSQGEFTDLCRGPHVP 188

Query: 701 STGEI 705
           STG++
Sbjct: 189 STGKL 193


>gi|83942465|ref|ZP_00954926.1| hypothetical protein EE36_15532 [Sulfitobacter sp. EE-36]
 gi|83846558|gb|EAP84434.1| hypothetical protein EE36_15532 [Sulfitobacter sp. EE-36]
          Length = 239

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 17/217 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T FY   GGQ GD+G    D  R+ I    K  +G  +        I +    + 
Sbjct: 28  IVLDRTVFYPTGGGQPGDSGWLNWDKQRMPIATTVKGLDGSIILVPAEPEEIPQPGTHVT 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R +    H   H L H LS ++   V       T   L FD+  +      + 
Sbjct: 88  QKLDWDRRHR----HMRVHSLLHLLSVVVPFPVVGGQISATHGRLDFDLADA----PEDR 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASG------AAALLGTKYNDRVRVVSVEYEDG 686
             IED +   IAQ+LP+    + +E+  A+       + A   T  N  VR+V +   D 
Sbjct: 140 DGIEDALASYIAQDLPITDHWITQEELQAAPELVKTLSVAPPVTAAN--VRLVQIGEGDA 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     CGGTHV+ TGEI  + +        G RRI
Sbjct: 198 WIDLQP-CGGTHVARTGEIGAVRLGKIEKKGRGTRRI 233


>gi|228909431|ref|ZP_04073256.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           200]
 gi|228850208|gb|EEM95037.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           200]
          Length = 411

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 182/401 (45%), Gaps = 51/401 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAEM 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 150 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KTLPLRKEPNMTENIRVVIIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNF 796
           ++  L  S+ ++  +V ++     E  + +Q ++ K       +L ++ +  H  AD+  
Sbjct: 255 VSKQLNSSETDIPAKVAQLLTSQKENEKAIQTMNEKLLFVEANELLLQPIKIH--ADI-L 311

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +S + +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L 
Sbjct: 312 ISKVFTNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LL 368

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + +   + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 369 KDALPTIEGKGGGNKKS-ARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|10639269|emb|CAC11271.1| alanyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 245

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 7/208 (3%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   E VS     +V D+T FY   GGQ  DTG  + D    ++ DVQK  + +   H +
Sbjct: 18  EFQAEVVSVDSNGIVLDRTAFYPTGGGQPNDTGIIVNDDKTYRVVDVQKHGDDVV--HIL 75

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L+    +   ID++ R      H+A H+L   +S    S     G  I  D  R 
Sbjct: 76  ESVDGLKAGDRIYGKIDWERRYAHMRYHTAIHILDGIVSAKHNSEALLTGGQIYEDRSRI 135

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVR 677
           D+ + +  T   +  I    N+ I++   V    ++RE+A+     A    G K  + + 
Sbjct: 136 DM-NIENFTKEFVDQIIQEANEFISEGHRVYAENISREEAMKRPNLARTEPGRKLIESLP 194

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           VV +   +G    S   GGTHV++T E+
Sbjct: 195 VVRIIVIEGLDEQSD--GGTHVANTREV 220


>gi|301789379|ref|XP_002930107.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA editing protein
           Aarsd1-like [Ailuropoda melanoleuca]
          Length = 599

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 158/390 (40%), Gaps = 63/390 (16%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K       VV + T  + 
Sbjct: 185 KKVNTKRPPPGMDDLDFTTTVVSCSPA-----ELQTEGSNGKKEVLSGFHVVLEDTLLFP 239

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  I D   L++T  ++ A+        +  G   TE+ +   +D++ R  
Sbjct: 240 EGGGQPDDRG-TINDISVLRVT--RRGAQADHFTQTPLAPG---TEVQV--RVDWERRFD 291

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HS  HL+      + G   +          +  D   S  +T  ++ +IE +VN+ 
Sbjct: 292 HMQQHSGQHLITAVADHLFGLKTTSWELGRVRSVIELD---SPSVTVEQVAAIEQSVNEK 348

Query: 643 IAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   LPV+ + ++ +D  +       L   +   VRVV++E  D       +C GTHVS+
Sbjct: 349 IRSRLPVIVQELSLDDPEVEQVRGRGLPDDHAGPVRVVTIESIDAN-----MCCGTHVSN 403

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             ++ ++ I+     +     +  + G R    L       K+L + LK          E
Sbjct: 404 LSDLQVIKILGVEKGKKNKTNLAFLAGNRVLKWLERSHGTEKALTALLKCG-------AE 456

Query: 762 EIWEEYRKLQ-----------------LIHAKRKLQLNVED----LSCH-KIADVNFMSH 799
           E  E  RKLQ                  +H    L+ N  D    ++ H K  D  FM+ 
Sbjct: 457 EHAEAVRKLQNSTKLLQKNNLNLLRDLAVHVAHSLR-NSPDWGGVVTLHRKEGDSEFMNI 515

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           I +E+ S+E    +    +K  +G+ +L G
Sbjct: 516 IANEIGSEETLLFLTVGDEK-GAGLFLLAG 544


>gi|229157195|ref|ZP_04285275.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 4342]
 gi|228626259|gb|EEK83006.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 4342]
          Length = 411

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 173/398 (43%), Gaps = 45/398 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G  + L + +V ++     + H I ++  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNGITV-LGVEEVNEE-----IRHFITKQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSASFWDHFNIPTI-GFHLGR--ETVTID-LETENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N+I+ +N P+    M+ E+A              + +R+V +E ++ 
Sbjct: 150 VEKAVQIA-----NNIVFENHPIRIEWMDLEEA--KTLPLRKEPNMTENIRIVMIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K +
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDV 255

Query: 746 ASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSH 799
           +  L  S+ ++  +V ++     E  + +Q ++ K  L     +L     KI     +S 
Sbjct: 256 SKQLNSSESDIPAKVAQLLTSQKENEKTIQTMNEKL-LYAEANELLQQPAKIHASILISK 314

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           + +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA+    L 
Sbjct: 315 VFTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNALLKDALP 373

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A     G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AI---EGKGGGNKKSARGGGKAFMTGDEFLNQLISSLQ 408


>gi|209549040|ref|YP_002280957.1| threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534796|gb|ACI54731.1| Threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLV 572
            DQT FYA +GGQ GD+G     DG ++ +   +   ++ I +H  +          +LV
Sbjct: 31  LDQTCFYATSGGQPGDSGELERADGTKIVLGQTKHGPSKDIVIHVPLENEPRPLVGETLV 90

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           L +D+Q R +L   H+A HLL    S  I G+ V +  S       R D    + I   E
Sbjct: 91  LHVDWQRRYRLMRMHTACHLLSVVCSYPITGAAVGEEES-------RVDFDMVETIDKDE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGV 688
           + +    + +++ +N PV  + +  ED +A+    +        +   RV  V   +   
Sbjct: 144 VTA---KLMELVGENHPVYLQWITDED-LAANPDIVKSKNVRPPIGLGRVSLVCIGENSS 199

Query: 689 HSSALCGGTHVSSTGEIMLLYI 710
             S  CGGTHVS T E+  ++I
Sbjct: 200 IDSQPCGGTHVSETQEVGQIHI 221


>gi|89900130|ref|YP_522601.1| threonyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|89344867|gb|ABD69070.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodoferax
           ferrireducens T118]
          Length = 669

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  +  + A
Sbjct: 99  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFFYDFSYKRPFTPEDLLAIEQKMAALAA 157

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ PV  R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 158 KDEPVTRRVLPRDEAVAYFKG--LGENYKAEIIASIPAGEDVSLYREGKFEDLCRGPHVP 215

Query: 701 STGEIMLLYIV 711
           STG++    ++
Sbjct: 216 STGKLKFFKLM 226


>gi|254498720|ref|ZP_05111436.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
 gi|254352048|gb|EET10867.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
          Length = 648

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           ++  + SLV+  + Q      I HS  HLL  A+ ++  S     G  I  DG  +D + 
Sbjct: 59  LMEHDCSLVIITEKQEESLEVIRHSTAHLLAQAVKSLFPSAQVTIGPVIE-DGFYYDFSF 117

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV------- 676
            +P T  +L+ IE  + ++   N P+  R + R++AI       +G +Y  ++       
Sbjct: 118 QRPFTPEDLEQIEAKMMELAKANYPITRRELPRDEAI--NYFKDIGEEYKAKIIADIPAT 175

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTG 703
            V+S+ Y+ G      LC G HV +TG
Sbjct: 176 EVLSL-YKQGDFED--LCRGPHVPATG 199


>gi|297622597|ref|YP_003704031.1| Threonyl/alanyl tRNA synthetase SAD [Truepera radiovictrix DSM
           17093]
 gi|297163777|gb|ADI13488.1| Threonyl/alanyl tRNA synthetase SAD [Truepera radiovictrix DSM
           17093]
          Length = 397

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 147/388 (37%), Gaps = 45/388 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL--RTEMS 570
           V  + T FY  +GGQ  DTG   G  +    TDV  K EG  V H +  R  +  R E +
Sbjct: 32  VRLEDTLFYPTSGGQPHDTGTLGGAAV----TDV--KLEGDAVWHLVAGRPEVGARVEGA 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSH----VSQNGSCITPDGLRFDVTHSKP 626
           L    D+  R +    HSA HLL  A   +  +     VS  GS  T D        ++ 
Sbjct: 86  L----DWSRRYRHMQRHSAQHLLSQAFYRLAPAFETRAVSLAGSVCTLD--LAGAPSAED 139

Query: 627 ITSAELKSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
              AE  ++E     +      V    ++R   R              K   RVR+V + 
Sbjct: 140 AAQAETLALEAMYAALAVTTFEVDEGELSRYPLRRP-----------PKVTGRVRLVQM- 187

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G    + CGGTHV  TGE + L ++    IR  + R+    G  A++    + + +
Sbjct: 188 ----GDFELSACGGTHVRCTGEALPLKVLKLERIRGALTRVHFAAGWEAQADYGVKHQLV 243

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHII 801
             LA+       ++  RV  +      LQ  + A R            + A    + + +
Sbjct: 244 SDLAARFSARPSDLSARVGALQAALHDLQRDLEAARARLAAGLAAELGRSASGGVVCYAL 303

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            E  +  L+ +   L ++   G+  L+   +E +A +L            A   A L   
Sbjct: 304 REDQADLLEPLAGQLTER---GLTALLAAPREGRAQLLFARPAAGEGDLRAALRAALPYL 360

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               G GGG P  AQ  GP   +  +A+
Sbjct: 361 R---GRGGGTPARAQGSGPETARVPEAL 385


>gi|251795037|ref|YP_003009768.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247542663|gb|ACS99681.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 637

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  H+L  A+  + GS   + G   +  DG  +DV     +++ +L++IE  +  I+ +
Sbjct: 74  HSTAHVLAQAIKRLYGSEAVKLGIGPVIEDGFYYDVDLDHSLSTKDLEAIEQEMRSIVKE 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGTH 698
           NLP+  RI++RE+A+      L G +       + +   DG V         + LC G H
Sbjct: 134 NLPIKRRIVSREEAL-----VLFGERGEPLKLELILNLPDGEVIRIYEQGEFADLCRGPH 188

Query: 699 VSSTGEI 705
           + STG I
Sbjct: 189 LPSTGRI 195


>gi|89054486|ref|YP_509937.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Jannaschia sp. CCS1]
 gi|88864035|gb|ABD54912.1| Ala-tRNA(Pro) hydrolase [Jannaschia sp. CCS1]
          Length = 246

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 17/215 (7%)

Query: 506 VSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           V GQ  E  V+ D+T FYA  GGQ GD+G    DG RL I    K    I V  A     
Sbjct: 20  VIGQTEEGGVILDRTIFYARGGGQPGDSGALTWDGHRLPIATAVKGP--IPVEGAGGAIV 77

Query: 564 ILRTEMSLVLTIDYQNRRQLS----INHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           ++  E + +  +  +  +QL     + H   H   H LS ++   V+  G  +  D  R 
Sbjct: 78  LIPAEPAPLPPVGAEVEQQLDWDRRLGHMRIHTALHLLSVVIPLPVT--GGAVAADKGRL 135

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDR 675
           D    +P     +  +E  +N +I ++LPV    +      A+       ++        
Sbjct: 136 DFLMPQPPEDKMI--LEGQLNALITRDLPVSVEWITESQLNANPNLVKTLSVQPPSGAGE 193

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +R+V +  E   V     CGGTHV+ T EI  L I
Sbjct: 194 IRLVRIGDEAAPVDLQP-CGGTHVARTSEIGKLAI 227


>gi|253580472|ref|ZP_04857737.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848202|gb|EES76167.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 390

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 26/226 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D++ FY E GGQ  D G  +GD    ++T+V +K +G  +H+       L     + 
Sbjct: 40  VILDESAFYPEGGGQPSDVG-TLGDA---KVTEVHEK-DGELLHYT---DKALEVGAKVE 91

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R  L   HS  H++   +    G      G  +  D +  D+  +  +  ++L
Sbjct: 92  GKIDWVRRFDLMQQHSGEHMVSGIIHEKYG--YDNVGFHMGSDVITVDL--NGMLDDSQL 147

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             IE  VN+ + ++  VV    + E+           L G     +VR+V+      GV 
Sbjct: 148 AEIEREVNERVWEDREVVITYPDAEELKTIDYRSKKELTG-----QVRIVTFP----GVD 198

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
             A CG THV+ TGEI ++ ++S      GI R+E I G+R   +L
Sbjct: 199 VCACCG-THVTHTGEIGMVKLLSVVKFHDGI-RMEMICGKRVLDYL 242


>gi|307594435|ref|YP_003900752.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta distributa DSM
           14429]
 gi|307549636|gb|ADN49701.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta distributa DSM
           14429]
          Length = 240

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  DQT F+  +GG   DTG  I  G    + +V K+ E     H +      R   +L 
Sbjct: 28  VWLDQTLFHPRSGGVANDTGRLIWQGEEYVVKEVIKEGEDAV--HILDREPRFRVGDTLH 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR--FDVTHSKPITSA 630
             ID++ R +L   H+ATH++         + V+  G  ITP+  R  +++T S      
Sbjct: 86  GVIDWERRYRLMRLHTATHIIAALAYKKYNALVT--GGDITPEYARDDYNLTLSGDALRK 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGG 687
             + +    N+I+ + +PV    + RE+A+       L  +     D  R+V +E    G
Sbjct: 144 AFQDLIAEANEIVRRGIPVKIYFLRREEAMKIPGVVKLAEREPPPGDEWRIVEIE----G 199

Query: 688 VHSSALCGGTHVSSTGEI-MLLYIVSES 714
           +   A  GG HV++T EI  ++++ SES
Sbjct: 200 IDIQA-DGGPHVANTREIGEIVFLKSES 226


>gi|47504|emb|CAA41766.1| alaS [Sulfolobus solfataricus]
          Length = 182

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           V   R  FL FF+K GH ++P   ++      L  T + +V F+   T G  KP    + 
Sbjct: 63  VRESREKFLRFFEKRGHTIVPPKPVVAKWRDDLYLTIASIVDFQPFVTSGLAKPPANPLV 122

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
             Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  +  A +  T+
Sbjct: 123 VSQPCIRL----EDVDNVGITFGRHLTTFEMAAHHAFNYPDKQIYWKDETVAFAKEFFTE 178

Query: 117 EFDL 120
           E  +
Sbjct: 179 ELGI 182


>gi|320335199|ref|YP_004171910.1| Alanyl-tRNA synthetase, class IIc [Deinococcus maricopensis DSM
           21211]
 gi|319756488|gb|ADV68245.1| Alanyl-tRNA synthetase, class IIc [Deinococcus maricopensis DSM
           21211]
          Length = 394

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 134/311 (43%), Gaps = 23/311 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  D T FY E GGQ  D G     G  +++ DVQ++A G+  H   V+        +++
Sbjct: 28  VALDGTCFYPEGGGQNADAGTLAWAGGEVRVVDVQREA-GVVWHR--VDGPAPAVGEAVM 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ++   R +    HS  HLL  A   I   H     + ++       +      T AE+
Sbjct: 85  GRVEAGRRWRHMERHSGEHLLAQAFVRI---HPRLRVAAVSMRSAECTLDLEGDPTEAEV 141

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           ++ E  + ++I ++L + T +   E  + S           D VR+V    E G +   +
Sbjct: 142 RAAEALLREVIRRDLRLET-VTVPESELGSYPLRRPPQVRGD-VRLVMFRDEAGELFDVS 199

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            CGGTHV     +  + ++    +R G+ R+  + G+ A+++L G     ++LA      
Sbjct: 200 ACGGTHVPRAAVVAPVVVLRTERVRGGLTRVVFMAGEEAQAYLGGVYRDARALAGTFSTG 259

Query: 753 QGNVVGRVEEIWEEYRKL--QLIHAKRK------LQLNVEDLSCHKIADVNFMSHIISEV 804
              +  RVE +  E   L  +L  A+ +      LQ+  E L+    A V F    ++  
Sbjct: 260 VEGLSERVEALRAERDALSAELKQARTQLAAALTLQVTPESLNG---APVRF----VALP 312

Query: 805 DSKELKSVMDA 815
           D++ L  V++A
Sbjct: 313 DARLLPDVLEA 323


>gi|16082487|ref|NP_393602.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Thermoplasma acidophilum DSM 1728]
          Length = 241

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 7/208 (3%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   E VS     +V D+T FY   GGQ  DTG  + D    ++ DVQK  + +   H +
Sbjct: 14  EFQAEVVSVDSNGIVLDRTAFYPTGGGQPNDTGIIVNDDKTYRVVDVQKHGDDVV--HIL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L+    +   ID++ R      H+A H+L   +S    S     G  I  D  R 
Sbjct: 72  ESVDGLKAGDRIYGKIDWERRYAHMRYHTAIHILDGIVSAKHNSEALLTGGQIYEDRSRI 131

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVR 677
           D+ + +  T   +  I    N+ I++   V    ++RE+A+     A    G K  + + 
Sbjct: 132 DM-NIENFTKEFVDQIIQEANEFISEGHRVYAENISREEAMKRPNLARTEPGRKLIESLP 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           VV +   +G    S   GGTHV++T E+
Sbjct: 191 VVRIIVIEGLDEQSD--GGTHVANTREV 216


>gi|229111045|ref|ZP_04240604.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-15]
 gi|228672408|gb|EEL27693.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-15]
          Length = 411

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 34/263 (12%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G  + VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L T
Sbjct: 38  GGNLYVVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHT 89

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDV 621
           E  +   I+++ R      H+A H+L      H  + TI G H+ +    +T D L  + 
Sbjct: 90  E-DVEGKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETEN 144

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            H++ +     K+I+   N I+ +N P+  + MN E+A              + +RVV +
Sbjct: 145 LHAETVE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KTLPLRKEPTMTENIRVVMI 197

Query: 682 E-YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           E ++  G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q +
Sbjct: 198 ENFDYNG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQ 250

Query: 741 KLKSLASFLKVSQGNVVGRVEEI 763
            +K+++  L  S+ ++  +V ++
Sbjct: 251 IMKNVSKQLNSSETDIPTKVAQL 273


>gi|295083903|emb|CBK65426.1| Alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
          Length = 158

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N   I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIE+ VN+ I+QNLPV    M  E A      + L    +  +R+V +     G 
Sbjct: 60  AEQIQSIEETVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEMGTFKIIS 138


>gi|161524952|ref|YP_001579964.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350300|ref|YP_001945928.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|238687005|sp|A9ABF9|SYT_BURM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160342381|gb|ABX15467.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334322|dbj|BAG43392.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 635

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFAYHRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPESDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|238027731|ref|YP_002911962.1| threonyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876925|gb|ACR29258.1| Threonyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 635

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL +A+  +        G  I  +G  +D ++S+P T  +L  IE  + ++  
Sbjct: 71  IRHSAAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFSYSRPFTPEDLAKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R +A+       +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRAEAVDYFRG--IGEKYKAEI-IESIPSSDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|307730402|ref|YP_003907626.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584937|gb|ADN58335.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 635

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +S+P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYSRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+    +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEI-IQSIPATDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|227822050|ref|YP_002826021.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227341050|gb|ACP25268.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 249

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--SL 571
            DQT FYA +GGQ GDTG     DG R+ I + +  A    + H   + G  R  +   L
Sbjct: 33  LDQTCFYATSGGQPGDTGFLEREDGSRIAIANTRHGASKDVIVHVPAD-GQARPAIGEKL 91

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           VL ID+  R +L   H+A HLL       I G+ V +  S       R D   S+ I   
Sbjct: 92  VLHIDWPRRYRLMRMHTACHLLSVVCPYPITGAAVGEEES-------RVDFDMSETIDKD 144

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-----RVVSVEYED 685
           E+ +    +  ++  N PV  + +  E+  A+    ++ +K N R      RV  V   +
Sbjct: 145 EVTAA---LMKLVEANHPVYVQWITDEELAAN--PGIVKSK-NVRPPSGMGRVSLVCIGE 198

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYI 710
                S  CGGTHVS T E+  ++I
Sbjct: 199 SSSIDSQPCGGTHVSETQEVGAIHI 223


>gi|325279389|ref|YP_004251931.1| Threonyl/alanyl tRNA synthetase SAD [Odoribacter splanchnicus DSM
           20712]
 gi|324311198|gb|ADY31751.1| Threonyl/alanyl tRNA synthetase SAD [Odoribacter splanchnicus DSM
           20712]
          Length = 161

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +L+  M   + ++  N+++    H+A H+L+  +  + G   S+N   I     + D  
Sbjct: 2   SLLKNYMEQEIQLNGHNKQEYPPMHTAEHILNQTMIRMFGCERSKNTH-IERKKSKCDYI 60

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            S   T+  +  IE+ VN++I Q+LPV T  + RE+       + L    +  +R+V + 
Sbjct: 61  LSVEPTAEMITEIENRVNEVIGQDLPVTTCFVTREEVPEGVDLSKLPEDASATLRIVKI- 119

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               G + +  C G HV +T EI    I+S
Sbjct: 120 ----GEYDTCACIGQHVGTTAEIGKFKIIS 145


>gi|221214904|ref|ZP_03587872.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165131|gb|EED97609.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 635

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFAYHRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPESDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|167582118|ref|ZP_02374992.1| threonyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 635

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEAIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A++   +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 RDEPVTRRVVSRDEAVSYFRS--IGEKYKAEI-IESIPASDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|289423549|ref|ZP_06425350.1| threonyl/alanyl tRNA synthetase, SAD [Peptostreptococcus anaerobius
           653-L]
 gi|289156051|gb|EFD04715.1| threonyl/alanyl tRNA synthetase, SAD [Peptostreptococcus anaerobius
           653-L]
          Length = 424

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 175/388 (45%), Gaps = 52/388 (13%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTG--CAIGDG---IRLQITDVQK---------KAEGIFVH 556
           +E+ F+ T F+   GGQ  D G    +  G    R ++ D+++           + +   
Sbjct: 28  LELEFEDTIFFPGGGGQPMDRGFISLVSGGEVKHRYKLEDIREVDNRIKHIVSRDQVLST 87

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----GSHVSQNGSC 611
           + I    I   ++  ++ +D+ +R      H+  HLL      +      G H+ ++ S 
Sbjct: 88  YEISSDKISSGDIECLMELDWDHRIDGMQQHTGQHLLSGCFYKLFKANTKGLHIGKDVSQ 147

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG           T   +K +ED  ND I++ + +   ++   D++ +    L  T 
Sbjct: 148 LDIDG---------EFTDEMVKKLEDYANDQISRAINIKNYVLKEGDSLET-RRPLPSTD 197

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            + R+    +E ED  +++   C G H+ +T +I ++ I      ++G R  E + G+RA
Sbjct: 198 GDIRI----LEIEDLDINA---CCGLHLDNTRDITMVKIKRYYKHKSGTR-FEYLAGKRA 249

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEY--RKLQLIHAKRKLQLNVEDL 786
             +L+ +D    S+ +     + N++  +E I    ++Y  R   L++   K  + +  L
Sbjct: 250 VDYLLKRDRIFDSVLNKYSAGEDNIIKSLENIEKKKDDYYSRSAYLLNELIKKDMEIY-L 308

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKK-IQSGIIMLVGISKEK-KASVLIVVTE 844
           S  K ++   +  IIS+ D++E    +D+L K  ++SG ++L+  +K++ K  +  + ++
Sbjct: 309 SSAK-SNAKGLKVIISKFDNEE-TWYLDSLAKHLVESGPLVLIFANKKQGKYMINFMASK 366

Query: 845 DLLDRFNAVDLARLSAKV-----LGGGG 867
             +     +DL +L   +     L GGG
Sbjct: 367 TTISEHTYIDLGKLFKSLANEYPLKGGG 394


>gi|221197733|ref|ZP_03570779.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204709|ref|ZP_03577726.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175566|gb|EEE07996.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221181665|gb|EEE14066.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 635

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFAYHRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVTRRVVSRDE--AAGYFRSIGEKYKAEI-IESIPESDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|83719712|ref|YP_443111.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620276|ref|ZP_02388907.1| threonyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|123767616|sp|Q2SVD8|SYT_BURTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83653537|gb|ABC37600.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 635

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEAIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A++   +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 RDEPVTRRVVSRDEAVSYFRS--IGEKYKAEI-IESIPASDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|15888552|ref|NP_354233.1| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|15156264|gb|AAK87018.1| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 245

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 21/204 (10%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--SL 571
            DQT FYA +GGQ GD+G     DG R+++   +  A+   + H  +E G    E+   L
Sbjct: 31  LDQTCFYATSGGQPGDSGFLERADGSRIELGVTKNGADKSVIVHVPLE-GQPSPEIGEKL 89

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D+  R +L   H+A HL    LS +    ++  G+ +  D  R D   S+ I   E
Sbjct: 90  TLHVDWPRRYKLMRMHTACHL----LSVVCQWPIT--GAAVGEDESRVDFDMSETIEKDE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-----RVVSVEYEDG 686
           + +    + +++  N PV  + ++ E+  A+    ++ +K N R      RV  V   + 
Sbjct: 144 VTA---KLMELVKANHPVFLQWISDEELQAN--PGIVKSK-NVRPPMGLGRVSLVCIGEN 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI 710
               S  CGGTHVS T E+  ++I
Sbjct: 198 SSIDSQPCGGTHVSETQEVGDIHI 221


>gi|228922330|ref|ZP_04085637.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837385|gb|EEM82719.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 411

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 34/258 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETVFYPTGGGQPYDTG-TLNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  A         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDYFNIPTIGFHLGK--ETVTID-LETENLHAETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A   +     N+I+ +N P+    MN E+A              + +RVV +E Y+  
Sbjct: 151 EKAVQIA-----NNIVFENHPICIEWMNLEEA--KTLPLRKEPTMTENIRVVIIENYDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSL 745
           G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K +
Sbjct: 204 G------CGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIIKDV 255

Query: 746 ASFLKVSQGNVVGRVEEI 763
           +  L  S+ ++  +V ++
Sbjct: 256 SKQLNSSETDIPAKVAQL 273


>gi|329904275|ref|ZP_08273747.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548052|gb|EGF32784.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 635

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPTIE-NGFYYDFSYKRPFTPDDLVTIEKKMLELAK 129

Query: 645 QNLPVVTRIMNREDAIA-------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           ++ PV  ++M+R+DAIA       +  A L+G    D  + VS+ Y +G    + LC G 
Sbjct: 130 RDEPVTRQVMSRDDAIAYFLAIGEAYKAELIGAIPAD--QEVSL-YTEGKF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|302878338|ref|YP_003846902.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302581127|gb|ADL55138.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 637

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D   +IG G  L    +  + +G  V  +     ++ T+  L +  D        I H
Sbjct: 20  VADVAASIGAG--LARATLAGRVDGSVVDSSF----LIETDAQLAIITDKDEAGLEVIRH 73

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S  HL+ HA+  +  S V      +  +G  +D ++ +P T  +L +IE  + +I+ ++L
Sbjct: 74  SMAHLMAHAVKELF-SDVQVTIGPVIENGFFYDFSYQRPFTPEDLLAIEKRMAEIVKRDL 132

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTG 703
            VV  ++ R++A+A      +G  Y   +       +D  +++    + LC G HV STG
Sbjct: 133 KVVRSVVPRDEAVAYFKG--IGENYKAEIIESIPADQDVSLYTQGEFTDLCRGPHVPSTG 190

Query: 704 EIMLLYIV 711
           ++ +  ++
Sbjct: 191 KLKVFKLM 198


>gi|257139340|ref|ZP_05587602.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 593

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 66  IRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEAIEKRMQELAK 124

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A++   +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 125 RDEPVTRRVVSRDEAVSYFRS--IGEKYKAEI-IESIPASDEIKLYSHGGF--TDLCRGP 179

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 180 HVPSTGKLKVFKLM 193


>gi|254252558|ref|ZP_04945876.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895167|gb|EAY69047.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 635

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFAYHRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++  A+G    +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVARRVVSRDE--AAGYFRSIGEKYKAEI-IESIPESDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|328951539|ref|YP_004368874.1| Threonyl/alanyl tRNA synthetase SAD [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451863|gb|AEB12764.1| Threonyl/alanyl tRNA synthetase SAD [Marinithermus hydrothermalis
           DSM 14884]
          Length = 387

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 146/373 (39%), Gaps = 57/373 (15%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERG-ILRTEMSL 571
           V DQT FY  +GGQ  DTG  +  G+R+ ++ + +K  E + V  A +E G ++  E   
Sbjct: 30  VLDQTLFYPTSGGQPHDTG--VLGGVRVTKVLEREKGGEILHVLEAPLEAGQVVEGE--- 84

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I +  R +    H+A H+L  A     G                  V+ ++P    +
Sbjct: 85  ---IHWNRRYRHMQRHTAQHILSQAFVRAAGWPT-------------VSVSLARPTCVID 128

Query: 632 LKSIEDN---------VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           L++  D           N  +  NLP+  R     +A A+        K   R+RVV +E
Sbjct: 129 LEADPDEGVIRKAEALANWAVYANLPI--RAFFASEAEAAQLPLRRAPKVTGRIRVVEIE 186

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             D      A CGGTH+ S+ E   + I+     R G  R+    G  A      +   L
Sbjct: 187 GWD-----LAACGGTHLRSSAEAGPIKILKYEKHRRGTTRVYFTAGWEALEDYAAKHTAL 241

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           K++A         V  RV ++        L+   R      + L   +I      +H   
Sbjct: 242 KTVAEHFSAQPLEVPARVAKL------EALLQEVRGALQETQRLLAERIVRELLETHPDR 295

Query: 803 EVDSKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTE----DLLDRFNAVDLA 856
            + +     V+D +  ++    G++ L+   + ++A VL+        DL   +NA    
Sbjct: 296 TIAALVPAVVLDEVGARLAEWPGVLALLVAPEGERARVLLTQHPERGADLRALWNA---- 351

Query: 857 RLSAKVLGGGGGG 869
             + + LG  GGG
Sbjct: 352 --ALRPLGAKGGG 362


>gi|329960573|ref|ZP_08298940.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328532637|gb|EGF59427.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 155

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E+K +E+ VN +IAQ+LPV T  + +E+A        L    ++ VR+V V     G
Sbjct: 59  TEKEVKQLEETVNAVIAQHLPVTTEFITQEEAKGRFDLERLPEDASETVRIVKV-----G 113

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
            +   LC GTHV++T EI +  I+S
Sbjct: 114 EYDECLCIGTHVANTSEIGIFKIIS 138


>gi|257095480|ref|YP_003169121.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048004|gb|ACV37192.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 245

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 22/220 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAE-GIFVHHAIVERGILRTEMS 570
           V  ++T FY   GGQ GD G  I  DG  LQI D +K A+ G  +H     +     ++S
Sbjct: 27  VQLERTIFYPLGGGQAGDRGALILPDGSDLQIADTRKGAQAGEILHVPAAGQEARLAQIS 86

Query: 571 LVLTIDYQ---NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +   +  +   +RRQ    H   H   H L  ++   V  NG  IT D  R D   ++P+
Sbjct: 87  IGQIVHARLDAHRRQ---RHMRFHTTTHLLCALIPHPV--NGCSITCDYARLDFHMAEPL 141

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEY 683
               L +    +  ++ +  PV  R +   +  A+     + ++   +   RVRV+ +E 
Sbjct: 142 DKEALTA---GLARLVGEARPVRQRWIAESELDANPGLVRSMSVQPPRGLGRVRVIEIE- 197

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              GV     CGGTHVS+T EI  + +       A  RR+
Sbjct: 198 ---GVDLQP-CGGTHVSNTAEIGAVVVTRIEKKSAMTRRV 233


>gi|319901999|ref|YP_004161727.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides helcogenes P
           36-108]
 gi|319417030|gb|ADV44141.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides helcogenes P
           36-108]
          Length = 155

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S +   I     + D       T
Sbjct: 1   MEQAIQLNEHNKQEYPPMHTTEHIINQTMIRLFGCGRSVSAH-IERKKSKLDYCLRACPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E++ +E+ VN II Q+LPV T ++ +++A        L    ++ VR+V V     G 
Sbjct: 60  EEEVRKLEEAVNAIIQQHLPVTTELITQKEAKDYFDLTRLPKDASEAVRIVKV-----GE 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIR 721
           +   LC G HVS+T EI    I+S    E + R  IR
Sbjct: 115 YDKCLCLGAHVSNTSEIGYFQIISHDWDEETKRWRIR 151


>gi|84517105|ref|ZP_01004461.1| hypothetical protein SKA53_03594 [Loktanella vestfoldensis SKA53]
 gi|84509000|gb|EAQ05461.1| hypothetical protein SKA53_03594 [Loktanella vestfoldensis SKA53]
          Length = 238

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 21/201 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRT-EMS 570
           +V D   FY  AGGQ GD+G     G  L I T V+ + + I +  A  E   L +   S
Sbjct: 28  IVLDACLFYPTAGGQPGDSGSLSWQGTTLDIATAVKGEGDSIILLPA--EPAPLPSVGQS 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L+  +++  R +    H+A HL    LS ++   VS  G  I  D  R D     P    
Sbjct: 86  LLQKLNWDRRYRHMRVHTALHL----LSVVIPLPVS--GGAIATDKGRLDF--DMPDAPE 137

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYEDG 686
           + +++ED +N +IA N+ V    +   D  A        ++   + + R+R+V +     
Sbjct: 138 DKEALEDALNRLIACNMAVTEEWITEADLDAQPDLVKTMSVQPPRGSGRIRLVRIGI--- 194

Query: 687 GVHSSAL--CGGTHVSSTGEI 705
           G  ++ L  CGGTHV++T EI
Sbjct: 195 GAETADLQPCGGTHVANTSEI 215


>gi|298482854|ref|ZP_07001037.1| alanyl-tRNA synthetase family protein [Bacteroides sp. D22]
 gi|298271054|gb|EFI12632.1| alanyl-tRNA synthetase family protein [Bacteroides sp. D22]
          Length = 158

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N   I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTYGCPRSRNAH-IERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIE+ VN+ I+QNLPV    M  E A      + L    +  +R+V +     G 
Sbjct: 60  AEQIQSIEETVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEMGTFKIIS 138


>gi|217072496|gb|ACJ84608.1| unknown [Medicago truncatula]
          Length = 258

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 30/228 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVE------RGI 564
           ++ D+T FY + GGQ  DTG  I     I+  + DV+ K +GI +H+ + E       G 
Sbjct: 38  LILDRTIFYPQGGGQPADTGFLIIHDSNIKFVVHDVRSK-DGIVLHYGVFEGMGGEFEGT 96

Query: 565 LRTEMSLVLTIDYQNRRQLSIN-HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L     + L++D ++RR+L+   HSA HLL   L  I   H+    +    DG   +   
Sbjct: 97  LEKGKEVSLSVD-EDRRKLNFRLHSAGHLLDICLPKIGLGHLEPGKAYHFSDGPWVEYKG 155

Query: 624 SKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----- 676
             P    +   K +E   N +I+    V   I+  ++     AA L G    D V     
Sbjct: 156 VVPQNEMQNKQKELEIEANALISMGGKVSADILLYDE-----AAKLCGGILPDYVPKEST 210

Query: 677 -RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            R+V +     G +    CGGTHV    +I  +  VS+   + G+ ++
Sbjct: 211 PRIVQI-----GDNPGCPCGGTHVLDVSDITKIK-VSQIRSKKGMTKV 252


>gi|55377393|ref|YP_135243.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55230118|gb|AAV45537.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 419

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 114/280 (40%), Gaps = 34/280 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV   T FYAE GGQ  D G   G    + + DVQ +   I   H + E        ++ 
Sbjct: 26  VVLTDTYFYAEGGGQPADRGTLDG----VAVVDVQHRNGDIV--HELAEPPTFGPGETVE 79

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG---SCITPD-------------G 616
             +D   R      H+A+H+L+ A   +L S +   G   S   PD              
Sbjct: 80  GQVDTAFRTYCMRAHTASHVLYGAGRRLL-SDLGYGGFDISARVPDEADDDDFGPAITGK 138

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---- 672
           +R D   +  I    L  +E   N  + ++  V    + R++A+     A   TK     
Sbjct: 139 VRVDFETTTEIGDETLTELERLTNRAVWESYDVTWEEIPRDEALGRDDIAF-NTKTEEGI 197

Query: 673 -NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             + VRVV+++  D      A CGGTHV +T EI  + ++  S+   G+ R+E   G RA
Sbjct: 198 EGETVRVVTIDGWD-----VAACGGTHVGNTREIGPVTVLGRSNPGEGLTRVEFAVGPRA 252

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
                 + E+  + A  L  +   +   V+ +  E   L+
Sbjct: 253 IRRRATEHERAMTAAQSLDTNVAELPAAVDGLQSECDDLR 292


>gi|241204347|ref|YP_002975443.1| threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858237|gb|ACS55904.1| Threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 245

 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 23/205 (11%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--SL 571
            DQT FYA +GGQ GDTG     DG ++ +   +       + H  +E G  R  +  +L
Sbjct: 31  LDQTCFYATSGGQPGDTGELERADGSKIALGQTKHGPSKDVIIHVPLE-GAPRPVVGETL 89

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           VL +D+  R +L   H+A HLL    S  I G+ V +  S +      FD+     I + 
Sbjct: 90  VLHVDWPRRYRLMRMHTACHLLSVVCSYPITGAAVGEEESRVD-----FDM-----IETI 139

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-----RVVSVEYED 685
           +  ++   +  ++ QN PV  + +  E+ +A+    ++ +K N R      RV  V   +
Sbjct: 140 DKDAVTVKLMQLVEQNHPVTLQWITDEELVAN--PDIVKSK-NVRPPMGLGRVSLVCIGE 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYI 710
                S  CGGTHVS T E+  ++I
Sbjct: 197 NSSIDSQPCGGTHVSETQEVGRIHI 221


>gi|253996955|ref|YP_003049019.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983634|gb|ACT48492.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 635

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSAAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLIAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  +++ R +A+A   +  +G +Y   +       +D  +++    + LC G HV 
Sbjct: 130 KDEPVTRKVLPRAEAVAYFKS--IGEQYKAEIIESIPSDDDVSLYTEGNFTDLCRGPHVP 187

Query: 701 STGEI 705
           STG+I
Sbjct: 188 STGKI 192


>gi|167764447|ref|ZP_02436568.1| hypothetical protein BACSTE_02831 [Bacteroides stercoris ATCC
           43183]
 gi|167697116|gb|EDS13695.1| hypothetical protein BACSTE_02831 [Bacteroides stercoris ATCC
           43183]
          Length = 582

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 11/203 (5%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MSLVLTIDYQNRRQ 582
           A G +   G  +  G RL+ T+   +      +  I    IL+ E M     ++  N+++
Sbjct: 382 ATGNVASNGIPVRLGFRLEGTERAGELLASGEYADIHVYSILKEELMEQQAKLNEHNKQE 441

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H+  H+++  +  + G   S +   I     + D   +   T  +++S+E  VN++
Sbjct: 442 YPPMHTTEHIINQTMIRLFGCGRSVSAH-IERKKSKLDYRLNACPTEEQIESLEKAVNEV 500

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           IA++LPV T  + + +A        L    ++ VR+V V     G +   LC GTHV +T
Sbjct: 501 IARHLPVTTEFIAQAEAKGRFDLERLPEDASETVRIVKV-----GDYDECLCIGTHVVNT 555

Query: 703 GEIMLLYIVS----ESSIRAGIR 721
            EI    I+S    E S R  +R
Sbjct: 556 SEIGTFKIISHDWDEESKRWRMR 578


>gi|83647272|ref|YP_435707.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123753567|sp|Q2SDJ2|SYT_HAHCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83635315|gb|ABC31282.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 637

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HLL  A+ +I  S     G  I  DG  +D    +P T  +L  IE+ + ++  
Sbjct: 71  IRHSSAHLLAMAVQSIFPSAQVTIGPVIE-DGFYYDFAFERPFTPDDLVKIEEKMQELSD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHV 699
            +LPV   +M+R +A+       +G +Y   + + S+  E+     S      LC G HV
Sbjct: 130 ADLPVTRSLMSRSEAVE--LFKKMGEEYKVEI-IASIPTEENLSFYSQGDFIDLCRGPHV 186

Query: 700 SSTGEI 705
            STG+I
Sbjct: 187 PSTGKI 192


>gi|53713916|ref|YP_099908.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|52216781|dbj|BAD49374.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
          Length = 230

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           T V + ++ I VH    +    +  M     ++  N+++    H+A HLL+  +    G 
Sbjct: 52  TQVYRNSKRINVHQKYKKENNAQIIMEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGC 111

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             S+N   I     + D       T  ++ +IE+ VN+ I ++LPV    M  E+A +  
Sbjct: 112 PRSRNAH-IEKKKSKCDYELPTCPTEEQIHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIV 170

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + L    ++ +R+V +     G + +  C G HV +T EI L  I+S
Sbjct: 171 DLSKLPENASEILRIVRI-----GDYDACACIGQHVENTSEIGLFKIIS 214


>gi|288940715|ref|YP_003442955.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896087|gb|ADC61923.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 639

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 21/185 (11%)

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D   AIG G  L    +  + +G  V  + +++R      +++V + D +   +L + H 
Sbjct: 22  DVAAAIGPG--LAKAALAGRVDGRLVDTSHVIDRD---AALAIVTSKDEETALEL-LRHD 75

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           A H++  A+  +        G  I  +G  +D    +P T A+L+ IE+ +++I+ ++LP
Sbjct: 76  AAHVMAQAVQELYPGAQVTIGPAIE-NGFYYDFARDEPFTPADLERIEERMHEIVKRDLP 134

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRV--------RVVSVEYEDGGVHSSALCGGTHVS 700
           +V  IM+RE+  A    A LG  Y   +          VS+ Y  G      +C G H+ 
Sbjct: 135 IVREIMDREE--AKRVFAELGEHYKVEIIDDIIPAGEAVSI-YRQGDWFD--VCRGPHLP 189

Query: 701 STGEI 705
           STG++
Sbjct: 190 STGKL 194


>gi|325292579|ref|YP_004278443.1| alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060432|gb|ADY64123.1| alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 245

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 21/206 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM-- 569
           +  DQT FYA +GGQ GD+G     DG R+++   +  ++   + H  +E G    E+  
Sbjct: 29  IELDQTCFYATSGGQPGDSGFLERADGSRIELGTTKNGSDKSVIIHVPLE-GQPSPEVGE 87

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L L +D+  R +L   H+A HL    LS +    ++  G+ +  D  R D   S+ I  
Sbjct: 88  KLTLHVDWPRRYKLMRMHTACHL----LSVVCQWPIT--GAAVGEDESRVDFDMSETIDK 141

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-----RVVSVEYE 684
            E+ +    + +++  N PV  + +  E+  A+    ++ +K N R      RV  V   
Sbjct: 142 DEVTA---KLMELVKANHPVFLQWITDEELQAN--PGIVKSK-NVRPPIGLGRVSLVCIG 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYI 710
           +     S  CGGTHVS T E+  ++I
Sbjct: 196 ENSTIDSQPCGGTHVSETQEVGDIHI 221


>gi|229830124|ref|ZP_04456193.1| hypothetical protein GCWU000342_02231 [Shuttleworthia satelles DSM
           14600]
 gi|229791422|gb|EEP27536.1| hypothetical protein GCWU000342_02231 [Shuttleworthia satelles DSM
           14600]
          Length = 407

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 117/272 (43%), Gaps = 49/272 (18%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----------GDGIRLQITDVQKKAEG 552
           E++  GQ  +++ +QT F+ E GGQ  D G  I          G   ++ + DV+ K+ G
Sbjct: 32  EKSHKGQ-FDIILNQTLFFPEEGGQTPDLGLLIPLPSSPDLPAGASPQVHVLDVKIKS-G 89

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH----LLHHALS-TILGSHVSQ 607
           + +HH     G L     +  +ID++ R     NHS  H    L+H A     +G H+S+
Sbjct: 90  V-IHHFC--DGPLAPGTPVRGSIDWERRYDNMQNHSGEHIFSGLVHSAFGYENVGFHLSE 146

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
             +C         + +S P+T  E+  +E   N II  N     R++   DA    A  L
Sbjct: 147 R-TC--------SMDYSGPLTREEIDRLETAANRIIFDN-----RVI---DASYPSAEEL 189

Query: 668 LGTKYNDR------VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
               Y  +      VR+V++   D        C   HV  TGE+ LL ++   S + G R
Sbjct: 190 AQLDYRSKKALSGPVRIVTIPDCD-----VCACCAPHVRRTGEVGLLKVLQIQSYKGGTR 244

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            + A  G RA +    +   L+ ++  L   Q
Sbjct: 245 LMIA-CGMRALADFRRKQSVLEEVSHLLSSPQ 275


>gi|218230827|ref|YP_002368436.1| alanyl-tRNA synthetase family protein [Bacillus cereus B4264]
 gi|218158784|gb|ACK58776.1| alanyl-tRNA synthetase family protein [Bacillus cereus B4264]
          Length = 400

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 34/258 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 32  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 82

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 139 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KRLPLRKEPTMTENIRVVMIENFDY 191

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K++
Sbjct: 192 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQSMKNV 244

Query: 746 ASFLKVSQGNVVGRVEEI 763
           +  L  S+ ++  +V ++
Sbjct: 245 SKQLNSSETDIPAKVAQL 262


>gi|239626668|ref|ZP_04669699.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516814|gb|EEQ56680.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 390

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 35/237 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSL 571
            V +Q  FY E GGQ  DTG       ++ +  V ++ E I    A  +E G L   +  
Sbjct: 33  AVLNQNGFYPEGGGQPSDTGTLN----QVPVLSVHEQGEEILHELASPLEPGTLAEGV-- 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKP 626
              ID+Q R      H+  H+L   +        +G H+      +  +G+         
Sbjct: 87  ---IDWQKRYDNMQQHTGEHILSGLVHRRYGYDNVGFHMGAGEVTVDFNGI--------- 134

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T+ EL  +ED  N ++  N+PV T   ++E+  +    +    + + +VR++ +   D 
Sbjct: 135 MTAEELDGLEDAANQVVYDNVPVHTLYPSKEELPSIDYRS--KKELSGQVRIIEIPGGD- 191

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                  C GTHV +TGE+ ++ I      + G+ RI  + G+RA   L+   E+LK
Sbjct: 192 ----VCACCGTHVENTGEVGIIKIRGMIRYKGGV-RISMLCGRRA---LLDYRERLK 240


>gi|209964464|ref|YP_002297379.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
 gi|209957930|gb|ACI98566.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
          Length = 244

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 99/232 (42%), Gaps = 40/232 (17%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE-----GIFVHHAIVERG--IL 565
           V  D+T FY   GGQ GD+G    +G  L+I D +K  E     G  V H   +    + 
Sbjct: 26  VRLDRTLFYPAGGGQPGDSGTLTWEGGTLRIADTRKAGEAAPLSGDDVLHIPEDAAAPLP 85

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHS 624
                + L ID++ R +    H+  HLL   +  ++ G  V  + S      L FDV   
Sbjct: 86  APGTPVTLEIDWERRHRHMRMHTTLHLLCAVVPGSVTGGQVGADRS-----RLDFDV--- 137

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
            P  S +   IE  +N +IA + PV  RI++  +            +  D VR +SV+  
Sbjct: 138 -PSGSLDKAEIEGALNALIAADHPVTERIVDDAEL----------DRRPDLVRTLSVQPP 186

Query: 685 DG---------GVHSSAL----CGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            G         G   + +    CGGTHV+ TGEI  + +V   +     RRI
Sbjct: 187 RGGGLLRLLLIGTDEAPVDLQPCGGTHVARTGEIGPVSVVKIENKGRQNRRI 238


>gi|167836852|ref|ZP_02463735.1| threonyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 635

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 11/133 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEQIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVE---YEDGGVHSSALCGGTH 698
           ++ PV  R+++R++A++   +  +G KY   +     VS E   Y  GG   + LC G H
Sbjct: 130 RDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIESIPVSDEIKLYSHGGF--TDLCRGPH 185

Query: 699 VSSTGEIMLLYIV 711
           V STG++ +  ++
Sbjct: 186 VPSTGKLKVFKLM 198


>gi|254504439|ref|ZP_05116590.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222440510|gb|EEE47189.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 238

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 28/204 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MS 570
           +V D+T FYA  GGQ GDTG   + DG R+ I      A+   + H   E   L T    
Sbjct: 28  IVLDRTVFYATGGGQPGDTGYLELEDGTRIDIATTVYDADKKTIVHVPAEEQTLPTPGTK 87

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           L   ID+  R +L   H+A HLL  AL   + G  +      +  D    D    K   +
Sbjct: 88  LTAHIDWARRYRLMRMHTALHLLSVALPFPVTGGQIGDGEGRLDFD--MGDTALDKEKVA 145

Query: 630 AELKSIEDNVNDIIAQNL--------PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           A L  +    +D+ ++ +        P + + M+ +    +G           RVR+V +
Sbjct: 146 AALNELAGGDHDVASEWISDEELDANPGLVKTMSVQPPRGAG-----------RVRLVRI 194

Query: 682 EYEDGGVHSSALCGGTHVSSTGEI 705
               G       CGGTHVS T EI
Sbjct: 195 ----GRDIDLQPCGGTHVSRTSEI 214


>gi|82548305|gb|ABB82995.1| putative metal-dependent hydrolase related to alanyl-tRNA
           synthetase [uncultured organism HF10_3D09]
          Length = 242

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 19/219 (8%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V+ DQT FY   GGQ  D G   G    + + +V+ +     +HH + +   L    ++
Sbjct: 30  KVILDQTLFYPLGGGQNWDLGTLQGPNGEMNVIEVRGRDS---IHHTVDDTFDLEVGDAV 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A HL+      + G  V   G+ I  D  R D    KPI   E
Sbjct: 87  HGKIDFERRYAHMRMHTAQHLVSGIAYEMFGG-VRTVGNQIHTDQSRIDF---KPIQFTE 142

Query: 632 --LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYE 684
             L +++++VN  I QNL V    M R +  +          LL +   D +RV+++   
Sbjct: 143 EMLANLQESVNHQITQNLDVTDSQMTRAEINSIMPEERTNMDLLPSFITD-LRVITI--- 198

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            G       C GTHV +  EI  +    + S   G +R+
Sbjct: 199 -GDKQDLCPCAGTHVRNISEIKGIEFTGKKSKGKGTQRV 236


>gi|302671191|ref|YP_003831151.1| alanyl-tRNA synthetase family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395664|gb|ADL34569.1| alanyl-tRNA synthetase family protein [Butyrivibrio proteoclasticus
           B316]
          Length = 409

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 119/273 (43%), Gaps = 37/273 (13%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           + EVV D+T F+ E GGQ  D G    D  +  +  ++  + G  + H   +   + T +
Sbjct: 33  RYEVVLDRTAFFPEQGGQGSDIGVLEFDDGK-SVAGIEHVSIGSEIRHIADKEIPVGTRV 91

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALST-----ILGSHVSQNGSCITPDGLRFDVTHS 624
             V  ID+  R      H+  H+    +++      +G H+S +   +  DG+       
Sbjct: 92  RGV--IDFARRFSNMQQHTGEHIFSGLVNSEYGYNNVGFHLSDSEVTMDYDGV------- 142

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRV 678
             +T+  ++ +E   N+ I  NL V+             A  L    Y  +      VR+
Sbjct: 143 --LTAENIRKLEIKANEAIWANLDVICEFPE--------ADKLSEIPYRSKKELSGDVRI 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V++     G+   A C   HV+ TGEI +L +V   + + G+ R+  + G+RA  +L G+
Sbjct: 193 VTIP----GIDICACC-APHVNRTGEIGMLKVVGLQNYKGGV-RVNILCGRRALLYLQGE 246

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            + +  L + L  S   VV  V+  +++   ++
Sbjct: 247 HDIVGELTALLTTSADKVVTSVKRAFDDNSNMK 279


>gi|209516675|ref|ZP_03265528.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209502950|gb|EEA02953.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 635

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFSYNRPFTPEDLERIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+    +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEAVEYFKS--IGEKYKAEI-IESIPASDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|186476316|ref|YP_001857786.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|238691316|sp|B2JJJ7|SYT_BURP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|184192775|gb|ACC70740.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 635

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++S+P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLFPEAQVTIGPVID-NGFYYDFSYSRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A  +     +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEA--ADYFKSIGEKYKAEI-IESIPASDDIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|295677048|ref|YP_003605572.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436891|gb|ADG16061.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 635

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+       +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEAVEYFKG--IGEKYKAEI-IESIPAGDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|319942329|ref|ZP_08016644.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804202|gb|EFW01102.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 636

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D ++++  T  +LK+IE  +++++ 
Sbjct: 71  IRHSTAHLMAQAVKELFPEAQVTIGPAIE-NGFYYDFSYTRAFTPEDLKAIEARMDELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +N+P+V   M RE+AI    A  LG  Y   +        V+S+ Y  G      LC G 
Sbjct: 130 KNIPIVREEMPREEAIDFFKA--LGEHYKAEIISSIPAGEVISL-YRQGDFVD--LCRGP 184

Query: 698 HVSSTG 703
           HV STG
Sbjct: 185 HVPSTG 190


>gi|13541032|ref|NP_110720.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Thermoplasma volcanium GSS1]
 gi|14324415|dbj|BAB59343.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 242

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 13/203 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ D+T FY   GGQ  DTG     G   ++ DV K  + +   H + +   L     + 
Sbjct: 27  LILDRTAFYPTGGGQPNDTGVIFCCGKEYRVNDVTKDGDEVI--HVVDDSTGLSAGAKVH 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            TID+  R      H+A H++   ++ + GS     G  I  D  R D+ + +  T   +
Sbjct: 85  GTIDWDRRYAHMRYHTAIHVIDGVVNVMHGSEALLTGGQIYEDRARIDM-NIENFTKEFV 143

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYND---RVRVVSVEYEDGG 687
             I +  N  + +   V   I+ +E+AI     A    G K  +    VR++ +E  D  
Sbjct: 144 DKIIEESNSFMKEGHRVYPDILTKEEAIKRPNLARTEPGRKLIETLPEVRIIVIEGLD-- 201

Query: 688 VHSSALCGGTHVSSTGEIMLLYI 710
                  GGTHVS+T E+  +++
Sbjct: 202 ---EQSDGGTHVSNTKEVGTIFV 221


>gi|198275260|ref|ZP_03207791.1| hypothetical protein BACPLE_01419 [Bacteroides plebeius DSM 17135]
 gi|198271843|gb|EDY96113.1| hypothetical protein BACPLE_01419 [Bacteroides plebeius DSM 17135]
          Length = 153

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 18/150 (12%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVT 622
           M   + ++  N+++    H+  H+++  +  + G      +H+ +  S       + D  
Sbjct: 1   MEQEIQLNAHNKQEYPPMHTCEHIINRTMVNLFGCGRAVSAHIERKKS-------KLDFA 53

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            S+ ++  ++  IE  VN++IA++LPV T  + +E+A        L    ++ VRVV V 
Sbjct: 54  LSQALSEDDIARIETTVNEVIARHLPVTTEFITQEEATGRFDMKRLPEGASETVRVVHV- 112

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               G +   LC G HV +T EI    I+S
Sbjct: 113 ----GDYDECLCIGQHVENTSEIGTFKIIS 138


>gi|83951321|ref|ZP_00960053.1| Alanyl-transfer RNA synthetase domain protein [Roseovarius
           nubinhibens ISM]
 gi|83836327|gb|EAP75624.1| Alanyl-transfer RNA synthetase domain protein [Roseovarius
           nubinhibens ISM]
          Length = 238

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 26/224 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V DQT FY   GGQ GD+G    D   + I T V+ + + + +  A   R +      L
Sbjct: 28  IVLDQTVFYPAGGGQPGDSGRLSWDRSEMTIATAVRGEGDQVVLVPAEPRR-LPPVGAHL 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDG---LRFDVTHSKPI 627
              ID++ R +    H+A H+L   +   ++G  V         DG   L FD+  +   
Sbjct: 87  EQRIDWERRHRHMRMHTALHILSVVIPLPVVGGAVG--------DGRGRLDFDMGEA--- 135

Query: 628 TSAELKSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            SA+++++E+ +N+ + ++LPV    +T+    E+         +  +  DRVR+V +  
Sbjct: 136 -SADVETLEELLNEAVDRDLPVEEEWITQTALAENPQLIKTVGAMPPRGVDRVRLVRIG- 193

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             G       CGGTHV+ TGEI  L I   S I +  RR   +T
Sbjct: 194 TGGDQIDLQPCGGTHVARTGEIGHLRI---SRIESRGRRTRRVT 234


>gi|160889513|ref|ZP_02070516.1| hypothetical protein BACUNI_01937 [Bacteroides uniformis ATCC 8492]
 gi|270296644|ref|ZP_06202843.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156861030|gb|EDO54461.1| hypothetical protein BACUNI_01937 [Bacteroides uniformis ATCC 8492]
 gi|270272631|gb|EFA18494.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 155

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 18/141 (12%)

Query: 578 QNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            N+++    H+  H+++  +  + G      +H+ +  S       + D   +   T  E
Sbjct: 10  HNKQEYPPMHTTEHIINQTMIRLFGCGRSISAHIERKKS-------KLDYLLAACPTEEE 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +K +E+ VN++IA+ LPV T  + +E+A        L    ++ VRVV V     G +  
Sbjct: 63  IKKLEEAVNEVIARQLPVTTEFITQEEAQGRFDLERLPDGASETVRVVKV-----GDYDE 117

Query: 692 ALCGGTHVSSTGEIMLLYIVS 712
            LC G HV +T EI    I+S
Sbjct: 118 CLCIGVHVENTSEIGTFKIIS 138


>gi|240103692|ref|YP_002960001.1| Alanyl-tRNA synthetase related protein [Thermococcus gammatolerans
           EJ3]
 gi|239911246|gb|ACS34137.1| Alanyl-tRNA synthetase related protein [Thermococcus gammatolerans
           EJ3]
          Length = 213

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 30/212 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H + E    +    + 
Sbjct: 27  LLLDQTIFYPTGGGQPHDRGWING----VEVLDVYKDEEG-NVWHVVKEPEKFKPNQEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID+  R +L   HSA HLL H L+ +L       GS ++ +  R+D+ +         
Sbjct: 82  LKIDWDYRYKLMRIHSAMHLLEHVLNLVLPGKWELYGSGMSVEKGRYDILYP-------- 133

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
               +NVN    + +    R+++    +         T+Y  ++R   V           
Sbjct: 134 ----ENVNKWKQEIIETFNRLVDEGGEMKIWWEG--ETRYT-QIRDFEV----------I 176

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            C GTHV    EI  L     SS+  G +R+E
Sbjct: 177 PCAGTHVRDIREIGHLKKFKRSSLGKGKQRLE 208


>gi|241715963|ref|XP_002413545.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215507361|gb|EEC16853.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 410

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 136/335 (40%), Gaps = 34/335 (10%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E+V + T  + E GGQ  D G A G  +   +   +K    I   H+    G       +
Sbjct: 41  ELVLEDTVLFPEGGGQPDDRGTANGVPV---LRVFRKNGHAIHFVHSPFTVG-----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF-DVTHSKPITSA 630
            L +D+  R      HS  HL+          H +   S    D + F ++     I +A
Sbjct: 93  ALEVDWTRRYDHMQQHSGQHLITAVAEDQFNWHTT---SWSLGDEVSFVELDAPAGIQAA 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGV 688
            ++ +E  VN+ I + +PV  ++        +G    L       D +RVV++     GV
Sbjct: 150 GVQRLEAAVNEKIRECVPVSVKLYEHGSEELNGVRTRLKLPEGEGDSIRVVTI----AGV 205

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S+  CG THVS+   +  + ++     + G   +  + G R   +L    ++ +SL + 
Sbjct: 206 DSNTCCG-THVSNLSHLQAIKLLYTEKGKQGKTNLYFLVGNRVLGYLDKAVKRERSLNTL 264

Query: 749 LKVSQGNVVGRVEEIWEE-----------YRKLQLIHAKRKLQLN--VEDLSCHKI-ADV 794
           LK          E++ +             R L L  AK   QL+   +  S H+  AD 
Sbjct: 265 LKCGPEEHAAMAEKLAKSLKLANKNALSVLRDLALAEAKLFKQLDPLPKFFSFHRREADA 324

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            FMS   +EV +K++   + A  +K  SG  +L G
Sbjct: 325 EFMSIFANEVGNKDVLLFLTAGDEK-GSGQFLLAG 358


>gi|324327522|gb|ADY22782.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 411

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 168/402 (41%), Gaps = 53/402 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H IVE+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDIDVINVEEIDGE-----IRHFIVEQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  +         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSASFWDYFNIPTIGFHLGR--ETVTID-LETENLHTETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A   +     N+I+ +N P+    M+ E+A              + +R+V +E ++  
Sbjct: 151 EKAVQIA-----NNIVFENHPIRIEWMDLEEA--KTLPLRKEPNMTENIRIVMIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKVIGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYR-----------KLQLIHAKRKLQLNVEDLSCHKIADVN 795
             L  S+ ++  +V ++    +           KL    A   LQ  V      KI    
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKTIQTMNEKLLYTEANELLQQPV------KIHASI 310

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +S + +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA+  
Sbjct: 311 LISKVFTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNALLK 369

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             L A     G GGG    A+ GG      D+ +  + S L+
Sbjct: 370 DALPAI---EGKGGGNKKSARGGGKAFMTGDEFLNQLISSLQ 408


>gi|126699779|ref|YP_001088676.1| putative RNA-binding protein [Clostridium difficile 630]
 gi|255101299|ref|ZP_05330276.1| putative RNA-binding protein [Clostridium difficile QCD-63q42]
 gi|115251216|emb|CAJ69047.1| putative alanyl-tRNA synthetase [Clostridium difficile]
          Length = 399

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 177/396 (44%), Gaps = 42/396 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+E      K  V+ D+T F+   GGQ GD G    D +      +    +G  ++H 
Sbjct: 16  AEIIEIKEVENKYHVLLDKTAFFPGGGGQFGDLGKIENDDV------INVYEDGKKIYHV 69

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCIT 613
           + ++ I   ++    +ID+  R      H   H+L         +   G H+    S + 
Sbjct: 70  LDKKPIKIHKVK--CSIDWDRREDGMHQHFGQHVLSGCFFKTFNANTTGFHLGNEYSTVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G          +   +++ IE   N+II QN+ V T +  +++         L    +
Sbjct: 128 IEG---------NLEEDKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-D 177

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +RV+ +    G + ++A C G H  STGE+ ++ I      ++   RIE + G+RA  
Sbjct: 178 EEIRVIKI----GDLDTNACC-GVHPKSTGELRMIKIKKWEKHKSST-RIEFLAGKRAVD 231

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            ++ +D  L  +  +L  S+ + +        +VEE   + R+L+ + +  +++  +E  
Sbjct: 232 EVLKRDIYLTKICRYLSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIE-- 289

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             +K+ +++ +  I  + D K +  + + + +   S  I L+ +    K +++   +++L
Sbjct: 290 KANKVGNISVIKKIYDDEDLKYVNKIANKIAEYENS--IALLAVKFNDKINLVFACSKNL 347

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            D  N   L + +  ++ G GGG +  +AQ GG N 
Sbjct: 348 KD-INMGVLLKDAINLIDGKGGGSKV-LAQGGGKNN 381


>gi|254975759|ref|ZP_05272231.1| putative RNA-binding protein [Clostridium difficile QCD-66c26]
 gi|255093146|ref|ZP_05322624.1| putative RNA-binding protein [Clostridium difficile CIP 107932]
 gi|255314888|ref|ZP_05356471.1| putative RNA-binding protein [Clostridium difficile QCD-76w55]
 gi|255517562|ref|ZP_05385238.1| putative RNA-binding protein [Clostridium difficile QCD-97b34]
 gi|255650673|ref|ZP_05397575.1| putative RNA-binding protein [Clostridium difficile QCD-37x79]
 gi|260683762|ref|YP_003215047.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260687422|ref|YP_003218556.1| putative RNA-binding protein [Clostridium difficile R20291]
 gi|306520599|ref|ZP_07406946.1| putative RNA-binding protein [Clostridium difficile QCD-32g58]
 gi|260209925|emb|CBA63887.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260213439|emb|CBE05105.1| putative RNA-binding protein [Clostridium difficile R20291]
          Length = 399

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 177/396 (44%), Gaps = 42/396 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+E      K  V+ D+T F+   GGQ GD G    D +      +    +G  ++H 
Sbjct: 16  AEIIEIKEVENKYHVLLDKTAFFPGGGGQFGDLGKIENDDV------INVYEDGKNIYHV 69

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCIT 613
           + ++ I   ++    +ID+  R      H   H+L         +   G H+    S + 
Sbjct: 70  LDKKPIKIHKVK--CSIDWDRREDGMHQHFGQHVLSGCFFKTFNANTTGFHLGNEYSTVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G          +   +++ IE   N+II QN+ V T +  +++         L    +
Sbjct: 128 IEG---------NLEENKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-D 177

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +RV+ +    G + ++A C G H  STGE+ ++ I      ++   RIE + G+RA  
Sbjct: 178 EEIRVIKI----GDLDTNACC-GVHPKSTGELRMIKIKKWEKHKSST-RIEFLAGKRAVD 231

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            ++ +D  L  +  +L  S+ + +        +VEE   + R+L+ + +  +++  +E  
Sbjct: 232 EVLKRDIYLTKICRYLSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIE-- 289

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             +K+ +++ +  I  + D K +  + + + +   S  I L+ +    K +++   +++L
Sbjct: 290 KANKVGNISVIKKIYDDEDLKYVNKIANKIAEYENS--IALLAVKFNDKINLVFACSKNL 347

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            D  N   L + +  ++ G GGG +  +AQ GG N 
Sbjct: 348 KD-INMGVLLKDAISLIDGKGGGSKV-LAQGGGKNN 381


>gi|307942358|ref|ZP_07657709.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307774644|gb|EFO33854.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 240

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 20/200 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMS 570
           ++ D+T FYA  GGQ GDTG   +  G RL I      ++   + H  VE   L      
Sbjct: 30  LILDRTIFYATGGGQPGDTGYLELDGGERLDIAATVYDSDRTTIIHVPVEGSPLPEIGAK 89

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +V  +D+Q R  +   H+A HLL  AL   + G  +S+         L FD+      T 
Sbjct: 90  VVAHLDWQRRYHMMRVHTALHLLSVALPFPVTGGQISEGEG-----RLDFDMGD----TQ 140

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYED 685
            + + I+  + D++A +  V T  +  E+  A        ++   + + RVR+V +    
Sbjct: 141 LDKEDIKARLADLVAGDHEVTTEWITDEELDAKPDLVKTMSVKPPRGSGRVRLVRI---- 196

Query: 686 GGVHSSALCGGTHVSSTGEI 705
           G       CGGTHV+ T EI
Sbjct: 197 GADVDLQPCGGTHVTRTSEI 216


>gi|296504127|ref|YP_003665827.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
 gi|296325179|gb|ADH08107.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
          Length = 400

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 34/258 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 32  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 82

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 139 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KRLPLRKEPTMTENIRVVMIENFDY 191

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K++
Sbjct: 192 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMEQQQQIMKNV 244

Query: 746 ASFLKVSQGNVVGRVEEI 763
           +  L  S+ ++  +V ++
Sbjct: 245 SKQLNSSETDIPAKVAQL 262


>gi|296242902|ref|YP_003650389.1| Ala-tRNA(Pro) hydrolase [Thermosphaera aggregans DSM 11486]
 gi|296095486|gb|ADG91437.1| Ala-tRNA(Pro) hydrolase [Thermosphaera aggregans DSM 11486]
          Length = 238

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 102/211 (48%), Gaps = 28/211 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTE-MS 570
           +V D+T F+ ++GG   DTG  + +G+ + +  V   K  G+ +H   +E+ +  +E + 
Sbjct: 27  LVLDKTIFHPKSGGVDNDTGWIVYNGLEIPVNSVYYDKESGLLIHE--LEKPLEASEGVK 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCITPDGLRFDVTHSK 625
           ++L +++  R +L   H+A HLL   +     + I G ++S+  +        FD     
Sbjct: 85  VLLRLNWNRRYRLMRLHTAAHLLSAIMYRDYNALITGGNISEEYAYDDYSMETFD----- 139

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVE 682
               A LK++E   N I+ Q L V    + R++A+       L  +     D++R+V + 
Sbjct: 140 --REAFLKAVE-KANQIVRQALEVKIYWLPRDEALKIPGVVKLAARMPPSVDKLRIVEIP 196

Query: 683 YEDGGVHSSALCGGTHVSST---GEIMLLYI 710
               G+   A  GG HV +T   GEI+LL I
Sbjct: 197 ----GIDVQA-DGGPHVRNTLEIGEIVLLKI 222


>gi|222085755|ref|YP_002544285.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723203|gb|ACM26359.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 245

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 15/201 (7%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLV 572
            DQT FYA +GGQ GDTG     DG ++ +   +    + I +H  +           LV
Sbjct: 31  LDQTCFYATSGGQPGDTGFLERADGSKIMLGQTRHGPIKDIIIHVPLESEAQPILGEKLV 90

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D+  R +L   H+A HL    LS +    ++  G+ +  D  R D   S+ I   E+
Sbjct: 91  LHVDWPRRYKLMRMHTACHL----LSVVCQFPIT--GAAVGEDESRVDFDMSETIDKDEV 144

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVH 689
            +    +  ++ +N PV  + +  E+ +A+    +        V   RV  V   +    
Sbjct: 145 TA---KMMALVNENHPVFVQWITDEE-LAANPGIVKSKNVRPPVGLGRVSLVCIGENSAV 200

Query: 690 SSALCGGTHVSSTGEIMLLYI 710
            S  CGGTHVS T E+  ++I
Sbjct: 201 DSQPCGGTHVSETQEVGAIHI 221


>gi|229146190|ref|ZP_04274565.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST24]
 gi|228637249|gb|EEK93704.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST24]
          Length = 411

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 121/258 (46%), Gaps = 34/258 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 150 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KRLPLRKEPTMTENIRVVMIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K++
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMEQQQQIMKNV 255

Query: 746 ASFLKVSQGNVVGRVEEI 763
           +  L  S+ ++  +V ++
Sbjct: 256 SKQLNSSETDIPAKVAQL 273


>gi|228959807|ref|ZP_04121482.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799937|gb|EEM46879.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 411

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 123/259 (47%), Gaps = 36/259 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DIE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A +K      N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 150 VEKA-IKI----ANKIVFENHPIRIQWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K+
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKN 254

Query: 745 LASFLKVSQGNVVGRVEEI 763
           ++  L  S+ ++  +V ++
Sbjct: 255 VSKQLNSSETDIPVKVAQL 273


>gi|83594816|ref|YP_428568.1| threonyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123753041|sp|Q2RNL4|SYT_RHORT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83577730|gb|ABC24281.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 643

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D   ++P T  +L+ IE+ + +I+ 
Sbjct: 71  LRHDAAHVMAQAVQELYPGTQVTIGPAIE-NGFYYDFARAEPFTPEDLERIEERMREIVG 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++LP+V  +  R++AIA      LG  Y   +       ED  V+       LC G H+ 
Sbjct: 130 RDLPIVREVWERDEAIAYFTK--LGETYKAELITGLPANEDVSVYRQGDWLDLCRGPHLP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|255307175|ref|ZP_05351346.1| putative RNA-binding protein [Clostridium difficile ATCC 43255]
          Length = 399

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 177/396 (44%), Gaps = 42/396 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+E      K  V+ D+T F+   GGQ GD G    D +      +    +G  ++H 
Sbjct: 16  AEIIEIKEVENKYHVLLDKTAFFPGGGGQFGDLGKIESDDV------INVYEDGKNIYHV 69

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCIT 613
           + ++ I   ++    +ID+  R      H   H+L         +   G H+    S + 
Sbjct: 70  LDKKPIKIHKVK--CSIDWDRREDGMHQHFGQHVLSGCFFKTFNANTTGFHLGNEYSTVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G          +   +++ IE   N+II QN+ V T +  +++         L    +
Sbjct: 128 IEG---------NLEEDKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-D 177

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +RV+ +    G + ++A C G H  STGE+ ++ I      ++   RIE + G+RA  
Sbjct: 178 EEIRVIKI----GDLDTNACC-GVHPKSTGELRMIKIKKWEKHKSST-RIEFLAGKRAVD 231

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            ++ +D  L  +  +L  S+ + +        +VEE   + R+L+ + +  +++  +E  
Sbjct: 232 EVLKRDIYLTKICRYLSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIE-- 289

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             +K+ +++ +  I  + D K +  + + + +   S  I L+ +    K +++   +++L
Sbjct: 290 KANKVGNISVIKKIYDDEDLKYVNKIANKIAEYENS--IALLAVKFNDKINLVFACSKNL 347

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            D  N   L + +  ++ G GGG +  +AQ GG N 
Sbjct: 348 KD-INMGVLLKDAISLIDGKGGGSKV-LAQGGGKNN 381


>gi|114332291|ref|YP_748513.1| threonyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122313048|sp|Q0ADN4|SYT_NITEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114309305|gb|ABI60548.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Nitrosomonas
           eutropha C91]
          Length = 635

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  S     G  I  DG  +D ++ +P T  +L +IE  + +I  
Sbjct: 71  IRHSCAHLLAHAVKELFPSAQVTIGPVIE-DGFYYDFSYERPFTPEDLAAIEKRMQEISR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +NL +  ++ +R  AI  G    LG  Y  ++       E   ++S    + LC G HV 
Sbjct: 130 RNLKIERKVWDRSKAI--GFFKDLGEHYKAQIIASIPNDEPVSLYSQGDFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
            T  I +  ++
Sbjct: 188 YTSRIKVFKLM 198


>gi|167836018|ref|ZP_02462901.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 243

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 30/224 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAEGIF----VH-----HAIVERG 563
            D+T FY   GGQ GDTG   +  G  L + D +K + +G      VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDTGTLTLAGGATLAVADTRKARFDGATPDDAVHVLAPGQAPLASG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + R   ++V  ID+  R +    H+A+HLL   L   +      +G  +T D +R D   
Sbjct: 90  V-RPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRVV 679
            +PI   + + +E  + +++    PV T  I + E A        +  K      RVR++
Sbjct: 143 VEPI---DRELVEARLAELVGGAHPVTTEWITDDEMAARPELVRTMSVKPPMGLGRVRLL 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 200 RIE----GVDLQP-CGGTHVHNTAEIGALRVAKLEKKSARTRRL 238


>gi|41615330|ref|NP_963828.1| hypothetical protein NEQ547 [Nanoarchaeum equitans Kin4-M]
 gi|40069054|gb|AAR39389.1| NEQ547 [Nanoarchaeum equitans Kin4-M]
          Length = 381

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 130/338 (38%), Gaps = 95/338 (28%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVTTVQKCVRAG 71
           +FF + G+  L S  ++      L F  + +V F+ +I  G+ +P+   +   Q C+R  
Sbjct: 76  KFFSERGYVPLNSYPVVARWRDDLDFVIASIVDFQPHIVNGEIEPIANRIIIPQYCLR-- 133

Query: 72  GKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD 131
              +DL  VG + RH T F M+G  +F         +   DLL                 
Sbjct: 134 --FDDLPLVGYSGRHFTSFIMIGQHAFEKPENYNPYKYLRDLLD---------------- 175

Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS 191
                   +    G   ++++    +++ W  A  G  GP  EIF+        GL    
Sbjct: 176 --------YFNYLGFKDNQLV---IHEDAW--AGGGNAGPSLEIFY-------TGL---- 211

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI---DTGMGLERMATVLQEKTNNYDIDL 248
                  E+ N V+M ++  + +   ++P  +I   D G G ER+   L    N Y++  
Sbjct: 212 -------ELANQVYMVYKVIDNK---LIPMENIRVLDMGAGHERIVWALNGSINAYEVTF 261

Query: 249 ------FKHLIQASEQVTGMKYEG------NNIVN------------------------- 271
                  ++      ++  + Y G      ++I+N                         
Sbjct: 262 PNSLKYLRNYFDLDREIKDIYYLGYKIESKDDIINVAKEYAENFGFDLDYVLKAWEEYAK 321

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
             ++ DHLRS    I DG+LP+N G GY +R ++RR  
Sbjct: 322 MYIVADHLRSVYLAIKDGMLPSNTGGGYNIRILLRRVF 359


>gi|85703002|ref|ZP_01034106.1| hypothetical protein ROS217_19712 [Roseovarius sp. 217]
 gi|85671930|gb|EAQ26787.1| hypothetical protein ROS217_19712 [Roseovarius sp. 217]
          Length = 239

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 15/198 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D   FY   GGQ GD+G     G  L I    K         A   + +     +L 
Sbjct: 28  IVLDHCLFYPAGGGQPGDSGRLEWRGRSLPIATAVKADGAAIALVAAEPQPLPAVGTALR 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            TID+  R +L   H+A HLL    S ++   VS  G  +  +  R D     P    + 
Sbjct: 88  QTIDWPRRHRLMRMHTALHLL----SVVIPLPVS--GGAVAEERSRLDF--DMPEAPTDR 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGG 687
            ++ED +N ++ ++LPV    +  +DA+ +    +          + RVR+V +      
Sbjct: 140 DTLEDYLNQLVDRDLPVTEDWIT-DDALRANPGLIKTMSVAPPMGSGRVRLVRIGQGRDQ 198

Query: 688 VHSSALCGGTHVSSTGEI 705
           V     CGGTHV+ TGEI
Sbjct: 199 VDLQP-CGGTHVARTGEI 215


>gi|299822779|ref|ZP_07054665.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816308|gb|EFI83546.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 640

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 15/195 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           + G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  DKGVSTADIAASISPGLKKKALAGKINGELVDLATPIEEDGKIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HLL  AL  +        G  I   G  +DV   +PI+      IE  +  I
Sbjct: 69  I-LRHSTAHLLAQALKRLYPDIKFGVGPAIE-TGFYYDVDTEEPISEESFPVIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSA----LCGGT 697
           + +NLP+V  +++RE+AI    A  +G  Y  + +  +  + E   ++S      LC G 
Sbjct: 127 VRENLPIVREVVSREEAIKRFEA--IGDHYKLELIEAIPAD-ETVTIYSQGEFFDLCRGI 183

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG++ +  +++
Sbjct: 184 HVPSTGKLQVFQLLN 198


>gi|292655832|ref|YP_003535729.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291370664|gb|ADE02891.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 643

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 13/196 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ D T    E G  + D   AIG G+       +    G+     + +   L     LV
Sbjct: 7   ILPDGTELSVEEGATVRDAAFAIGPGLG------KDTVAGVVDGELVDKETPLHDGADLV 60

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           +  D  +     + HSA H+   AL   L           T DG  +DVT S  +   +L
Sbjct: 61  IVTDQSDEYLDVLRHSAAHVFAQALQR-LHPEAKLTIGPWTDDGFYYDVT-SVDLEQEDL 118

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGVH 689
           ++IED + DII ++L +   +++RE+A+   A         +       E   Y+ G   
Sbjct: 119 EAIEDEMRDIIEEDLDIERVVVDREEALEKYADNPYKRDILEEEAAGDDELSFYQQGEFE 178

Query: 690 SSALCGGTHVSSTGEI 705
              LC G HV STGEI
Sbjct: 179 D--LCKGPHVESTGEI 192


>gi|14590056|ref|NP_142120.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570440|sp|O57848|ALAXM_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|134104183|pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
           Pyrococcus Horikoshii
 gi|3256494|dbj|BAA29177.1| 216aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 216

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/219 (27%), Positives = 92/219 (42%), Gaps = 43/219 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H + E    +    + 
Sbjct: 30  ILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEG-NVWHVVKEPEKFKVGDEVE 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAE 631
           L ID+  R +L   H+  HLL H L+ +LG    Q  GS ++ +  R+D+ +        
Sbjct: 85  LKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYP------- 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
                +N+N               +E  I+      L  KY D    V + +E    ++ 
Sbjct: 138 -----ENLNKY-------------KEQIIS------LFNKYVDEGGEVKIWWEGDRRYTQ 173

Query: 692 AL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 174 IRDFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLE 212


>gi|228986711|ref|ZP_04146841.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773042|gb|EEM21478.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 411

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 171/397 (43%), Gaps = 43/397 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G  + L + +V ++     + H I ++  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNGITV-LGVEEVNEE-----IRHFITKQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             I+++ R      H+A H+L  +         +G H+ +    +T D L  +  H++ +
Sbjct: 94  GKINWERRFDHMQQHAAQHILSASFWDYFNIPTIGFHLGR--ETVTID-LETENLHTETV 150

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDG 686
             A   +     N+I+ +N P+    M+ E+A              + +R+V +E ++  
Sbjct: 151 EKAVQIA-----NNIVFENHPIRIEWMDLEEA--KTLPLRKEPNMTENIRIVMIENFDYN 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++
Sbjct: 204 G------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVS 256

Query: 747 SFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
             L  S+ ++  +V ++     E  + +Q ++ K  L     +L     KI     +S +
Sbjct: 257 KQLNSSESDIPAKVAQLLTSQKENEKTIQTMNEKL-LYAEANELLQQPAKIHASILISKV 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA+    L A
Sbjct: 316 FTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNALLKDALPA 374

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                G GGG    A+ GG      D+ +  + S L+
Sbjct: 375 I---EGKGGGNKKSARGGGKAFMTGDEFLNQLISSLQ 408


>gi|187924732|ref|YP_001896374.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|238689588|sp|B2SZG2|SYT_BURPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187715926|gb|ACD17150.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 635

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+    +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEI-IESIPATDDIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|89069105|ref|ZP_01156478.1| hypothetical protein OG2516_15309 [Oceanicola granulosus HTCC2516]
 gi|89045278|gb|EAR51344.1| hypothetical protein OG2516_15309 [Oceanicola granulosus HTCC2516]
          Length = 237

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 88/203 (43%), Gaps = 26/203 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D+T FYA  GGQ GD+G    DG  ++I    K A+G  V        +      + 
Sbjct: 28  VVLDRTIFYATGGGQPGDSGRLSWDGGAIEIATTVKGADGDVVLVPAEPAPLPPAGARVR 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D++ R +    H+A HLL  A+       +   G  IT +  R D     P   A  
Sbjct: 88  QELDWERRHRHMRVHTALHLLSVAIP------LPVTGGSITAEKGRLDF--DMPDAPAR- 138

Query: 633 KSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
             IE  +  ++A +LPV    +       R D + +    +   +   RVR+V +     
Sbjct: 139 DGIEAALARMVAADLPVSAEWITEGELDARPDLVKT--LRVQPPRGTGRVRLVRI----- 191

Query: 687 GVHSSAL----CGGTHVSSTGEI 705
           G  +  L    CGGTHV+STGEI
Sbjct: 192 GQGADTLDLQPCGGTHVASTGEI 214


>gi|317480009|ref|ZP_07939122.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316903808|gb|EFV25649.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 155

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 18/141 (12%)

Query: 578 QNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            N+++    H+  H+++  +  + G      +H+ +  S       + D   +   T  E
Sbjct: 10  HNKQEYPPMHTTEHIINQTMIRLFGCGRSISAHIERKKS-------KLDYRLAACPTEEE 62

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +K +E+ VN++IA+ LP+ T  + +E+A        L    ++ VRVV V     G +  
Sbjct: 63  IKKLEEAVNEVIARQLPITTEFITQEEAQGRFDLERLPDGASETVRVVKV-----GDYDE 117

Query: 692 ALCGGTHVSSTGEIMLLYIVS 712
            LC G HV +T EI    I+S
Sbjct: 118 CLCIGVHVENTSEIGTFKIIS 138


>gi|311693962|gb|ADP96835.1| threonyl-tRNA synthetase [marine bacterium HP15]
          Length = 641

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D  + +P T+ +L  IE  + ++  
Sbjct: 71  IRHSTAHLMAMAVQELFPGAQVTIGPVID-NGFYYDFKYDRPFTNEDLARIEKRMEELSK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+LPV   IM+R++AI       +G +Y  R+       ED   +S      LC G HV 
Sbjct: 130 QDLPVSRSIMSRDEAIK--LFEDMGEEYKVRIIQDIPGEEDLSFYSQGDFIDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|91784428|ref|YP_559634.1| threonyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358618|sp|Q13WF7|SYT_BURXL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91688382|gb|ABE31582.1| Ser-tRNA(Thr) hydrolase [Burkholderia xenovorans LB400]
          Length = 635

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+    +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEI-IESIPATDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|74200281|dbj|BAE22937.1| unnamed protein product [Mus musculus]
          Length = 412

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 154/385 (40%), Gaps = 62/385 (16%)

Query: 476 LCQKPPI--DLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQL 528
           LCQ+     + T  V S   A     E+  +A  G+K       VV + T  + E GGQ 
Sbjct: 4   LCQRDSYAREFTTTVVSCSPA-----ELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQP 58

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I D   L++T    +A G F          L     + + +D++ R      HS
Sbjct: 59  DDRG-TINDISVLRVTRRGAQA-GHFTESP------LSPGSQVQVRVDWERRFDHMQQHS 110

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
             HL+      + G   +          +  D   S  +T+ ++ +IE +VN  I   LP
Sbjct: 111 GQHLITAVADLLFGLKTTSWELGRLRSVIELD---SPSVTAEQVAAIEQSVNQKIRDRLP 167

Query: 649 VVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V  R ++ +D  +       L   +   +RVV++E  D     S +C GTHVS+  ++ +
Sbjct: 168 VSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVD-----SNMCCGTHVSNLSDLQV 222

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + I+     +     +  + G R    +       K+L S LK         VE+  E  
Sbjct: 223 IKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCG-------VEDHVEAV 275

Query: 768 RKLQLIHAKRKLQLN----VEDLSCH-------------------KIADVNFMSHIISEV 804
           +KLQ  +A + LQ N    + DL+ H                   K  D  FM+ I +E+
Sbjct: 276 KKLQ--NATKLLQKNNLNHLRDLAVHTAHSLRSSPAWGGVVTLHRKEGDSEFMNIIANEI 333

Query: 805 DSKELKSVMDALQKKIQSGIIMLVG 829
            S+E    +    +K  +G+ +L G
Sbjct: 334 GSEETLLFLTVGDEK-GAGLFLLAG 357


>gi|229005861|ref|ZP_04163555.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock1-4]
 gi|228755325|gb|EEM04676.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock1-4]
          Length = 400

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 169/396 (42%), Gaps = 48/396 (12%)

Query: 499 GEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            +I+++A  S +K+ V   +T FY   GGQ  DTG         + + V  +     + H
Sbjct: 17  AQIIKQAYDSEEKLYVTLTETAFYPTGGGQPHDTGTLN------EASVVNVEEVEGEIRH 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSC 611
            I     L T+  +   I++Q R      H+A H+L      H  + TI G H+ +    
Sbjct: 71  FISSE--LHTK-EVTGKINWQRRFDHMQQHTAQHILSAAFWDHFDIPTI-GFHLGKETIT 126

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  D     +   +  TSA         N I+ +N P+  + MN E+A            
Sbjct: 127 IDLDTPELSI---ETATSAL-----QIANQIVFENHPIHIKWMNLEEA--KQLPLRKEPT 176

Query: 672 YNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
             + +RVV +E Y+  G      CGGTH   TGE+  ++I+     + GI R+  + G R
Sbjct: 177 ITENIRVVIIENYDYNG------CGGTHPKYTGEVGPIHIIEWERNKGGI-RLTLVAGWR 229

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL 786
               +    + +K ++  L  S+ ++  +V ++     E  + LQ ++ K  L +    L
Sbjct: 230 VLKLMERHQQIIKDVSKQLNSSENDIPNKVTQLLTSQEENEKALQTMNEKL-LFVEANKL 288

Query: 787 SCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             H I D++    +S + +    +E+  +   + ++ ++ I  LV  ++EK   VL    
Sbjct: 289 LQHSI-DIHAGTLISKVFTHRSMQEITKLSAIITEQNENSITYLVTENEEKLQCVL-ACG 346

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + +    N + L      + G GGG  +   A+ GG
Sbjct: 347 KAVTANMNTI-LKNALPTIEGKGGGNQKS--ARGGG 379


>gi|122889668|emb|CAM14331.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|123236422|emb|CAM21015.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 543

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 39/309 (12%)

Query: 474 KVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAE 523
           KV  ++PP     +D T  V S   A     E+  +A  G+K       VV + T  + E
Sbjct: 130 KVSTKRPPPAMDDLDFTTTVVSCSPA-----ELQTDASGGKKEVLSGFHVVLEDTLLFPE 184

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D G  I D   L++T  ++ A+      + +  G       + + +D++ R   
Sbjct: 185 GGGQPDDRG-TINDISVLRVT--RRGAQADHFTESPLSPG-----SQVQVRVDWERRFDH 236

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS  HL+      + G   +          +  D   S  +T+ ++ +IE +VN  I
Sbjct: 237 MQQHSGQHLITAVADLLFGLKTTSWELGRLRSVIELD---SPSVTAEQVAAIEQSVNQKI 293

Query: 644 AQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
              LPV  R ++ +D  +       L   +   +RVV++E    GV S+ +C GTHVS+ 
Sbjct: 294 RDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIE----GVDSN-MCCGTHVSNL 348

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++ ++ I+     +     +  + G R    +       K+L S LK         VE+
Sbjct: 349 SDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCG-------VED 401

Query: 763 IWEEYRKLQ 771
             E  +KLQ
Sbjct: 402 HVEAVKKLQ 410


>gi|225389532|ref|ZP_03759256.1| hypothetical protein CLOSTASPAR_03280 [Clostridium asparagiforme
           DSM 15981]
 gi|225044396|gb|EEG54642.1| hypothetical protein CLOSTASPAR_03280 [Clostridium asparagiforme
           DSM 15981]
          Length = 403

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 32/237 (13%)

Query: 502 VEEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           VEE   G+     V  +QT FY E GGQ  DTG    DG+ ++    +K  +      A 
Sbjct: 30  VEECRPGKDGTWMVALNQTGFYPEGGGQPSDTGTL--DGVLVRYV-CEKDGKVWHQVDAP 86

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITP 614
           +E G L   +     ID++ R     +H+  H+L   +        +G H+ ++   I  
Sbjct: 87  LEPGRLAEGV-----IDWERRYDHMQHHTGEHILSGLIHRRYGYDNVGFHMGKDEVTIDF 141

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           +GL         +T  +L+ +ED  N ++  N+PV       +   A    +    +   
Sbjct: 142 NGL---------LTMEQLEELEDMANGVVWDNVPVEEHFPTPQQLAALDYRS--KKELTG 190

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +VR++++   D     +  C GTHV++TGE+ ++ +      + G+ RI  + G++A
Sbjct: 191 QVRIINIPGGD-----TCACCGTHVTNTGEVGIIKVTGMIHYKGGV-RISILCGRKA 241


>gi|118589044|ref|ZP_01546451.1| Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614]
 gi|118438373|gb|EAV45007.1| Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614]
          Length = 257

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 22/204 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           +V D+T FYA  GGQ GD+G   + DG +L+I T V ++ +   VH     + +  T   
Sbjct: 47  IVLDRTVFYATGGGQPGDSGALELEDGTKLEIATAVYEEDKKTIVHVPSEGQNLPGTGSR 106

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDG-LRFDVTHSKPIT 628
           +   ID+  R +L   H+A HLL  AL   + G  +        P+G L FD+       
Sbjct: 107 VTAHIDWARRYRLMRIHTALHLLSVALPFPVTGGQIGD------PEGRLDFDMGDE---- 156

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKY---NDRVRVVSVEYE 684
           + +  ++ + +N + + +  V T+ +  E+  A+ G    +  K    + +VR+V +   
Sbjct: 157 TIDRDALVEKLNALASGDHEVTTQWITDEELDANPGLVKTMSVKPPRGSGKVRLVRI--- 213

Query: 685 DGGVHSSALCGGTHVSSTGEIMLL 708
            G       CGGTHV+ T EI +L
Sbjct: 214 -GSDVDLQPCGGTHVTRTSEIGVL 236


>gi|228998375|ref|ZP_04157966.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock3-17]
 gi|228761296|gb|EEM10251.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock3-17]
          Length = 400

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 169/396 (42%), Gaps = 48/396 (12%)

Query: 499 GEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            +I+++A  S +K+ V   +T FY   GGQ  DTG         + + V  +     + H
Sbjct: 17  AQIIKQAYDSEEKLYVTLTETAFYPTGGGQPHDTGTLN------EASVVNVEEVEGEIRH 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSC 611
            I     L T+  +   I++Q R      H+A H+L      H  + TI G H+ +    
Sbjct: 71  FISSE--LHTK-EVTGKINWQRRFDHMQQHTAQHILSAAFWDHFDIPTI-GFHLGKETIT 126

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  D     +   +  TSA         N I+ +N P+  + MN E+A            
Sbjct: 127 IDLDTPELSI---ETATSAL-----QIANQIVFENHPIHIKWMNLEEA--KQLPLRKEPT 176

Query: 672 YNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
             + +RVV +E Y+  G      CGGTH   TGE+  ++I+     + GI R+  + G R
Sbjct: 177 ITENIRVVIIENYDYNG------CGGTHPKYTGEVGPIHIIEWERNKGGI-RLTLVAGWR 229

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL 786
               +    + +K ++  L  S+ ++  +V ++     E  + LQ ++ K  L +    L
Sbjct: 230 VLKLMERHQQIIKDVSKQLNSSENDIPNKVTQLLTSQEENEKALQTMNEKL-LFVEANKL 288

Query: 787 SCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             H I D++    +S + +    +E+  +   + ++ ++ I  LV  ++EK   VL    
Sbjct: 289 LQHSI-DIHAGTLISKVFTHRSMQEITKLSAIITEQNENSITYLVTENEEKLQCVL-ACG 346

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           + +    N + L      + G GGG  +   A+ GG
Sbjct: 347 KAVTANMNTI-LKNALPTIEGKGGGNQKS--ARGGG 379


>gi|161524176|ref|YP_001579188.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia multivorans ATCC
           17616]
 gi|189351067|ref|YP_001946695.1| putative metal-dependent hydrolase [Burkholderia multivorans ATCC
           17616]
 gi|160341605|gb|ABX14691.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia multivorans ATCC
           17616]
 gi|189335089|dbj|BAG44159.1| predicted metal-dependent hydrolase [Burkholderia multivorans ATCC
           17616]
          Length = 243

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 102/244 (41%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A +   E + EAV    + +  D+T FY   GGQ GD G   + DG  + I D +K K +
Sbjct: 11  AYLAHCEAIVEAVGDDGIRL--DRTVFYPLGGGQAGDAGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+         +   L     +V TID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDALHVPAPGQDADVAALAPGTRVVATIDWARRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   S  I   +   +E  + +++    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATSDAI---DRDDVERRLAELVRGAHPVTTEWITDEEMAARP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ ++    GV     CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRID----GVDLQP-CGGTHVRNTSEIGALRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|222148395|ref|YP_002549352.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735383|gb|ACM36346.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 245

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 27/207 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            DQT FYA +GGQ GDTG    A G  I+L +T      + I +H  +  +        L
Sbjct: 31  LDQTCFYATSGGQPGDTGFLERADGSTIQLGLTR-HGPDKSIILHLPLEGQPSPDLGEKL 89

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           VL +D+  R +L   H+A HLL       I G+ V ++ S +  D    D    + +T+ 
Sbjct: 90  VLHVDWPRRYKLMRMHTACHLLSVVCPFPITGAAVGEDESRVDFD--MSDAIDRETVTAD 147

Query: 631 ELKSIEDN-------VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            ++ +E+N       + D      P + +  N    +  G  +L+    N  V       
Sbjct: 148 LMRLVEENHPVYLEWITDAQLAANPDIVKSKNVRPPMGLGRVSLVCIGENSSV------- 200

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
                  S  CGGTHVS T E+  ++I
Sbjct: 201 ------DSQPCGGTHVSETQEVGAIHI 221


>gi|229128895|ref|ZP_04257871.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-Cer4]
 gi|228654600|gb|EEL10462.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-Cer4]
          Length = 411

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 118/258 (45%), Gaps = 34/258 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I++  R      H+A H+L      H  + TI G H+   G       L  +  H++ 
Sbjct: 94  GKINWDRRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHL---GKVTVTIDLETENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 150 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K++
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNV 255

Query: 746 ASFLKVSQGNVVGRVEEI 763
           +  L  S+ ++  +V ++
Sbjct: 256 SKQLNSSETDIPTKVAQL 273


>gi|221211703|ref|ZP_03584682.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD1]
 gi|221169064|gb|EEE01532.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD1]
          Length = 243

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 102/244 (41%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A +   E + EAV    + +  D+T FY   GGQ GD G   + DG  + I D +K K +
Sbjct: 11  AYLAHCEAIVEAVGDDGIRL--DRTVFYPLGGGQAGDAGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+         +   L     ++ TID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQDADVAALAPGTRVIATIDWARRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   S  I   +   +E  + +++    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATSDAI---DRDDVERRLAELVRGAHPVTTEWITDEEMAARP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ ++    GV     CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRID----GVDLQP-CGGTHVRNTSEIGALRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|237738437|ref|ZP_04568918.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420317|gb|EEO35364.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 371

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 117/276 (42%), Gaps = 34/276 (12%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           E+  +G  VEV      +    GGQLGD G  I +    QI +V++          +V+R
Sbjct: 9   EKIKNGYLVEVEPKDILYIDGKGGQLGDRG-KIEEA---QILEVKESG-------VVVDR 57

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDG 616
            +   E  +   IDY  +  ++  H+A H+        + L+T+ G  +++  + +  D 
Sbjct: 58  ELEYGEYEV--KIDYIRQEDIACQHTAQHMFSAIAYNDYKLNTV-GFRMAEEYTTVDLD- 113

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR 675
                  S  IT   ++ +E   N++I + + +   IMN E+A    G    +  K    
Sbjct: 114 -------SNEITEEVIEELERKANEVIKKAIQLKIFIMNNEEARKIEGLRKAIKEKVVGD 166

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR V +   D G      C G HV +T +I L  I++   I+    R   + G+RA    
Sbjct: 167 VRFVEIPGVDLGA-----CAGFHVENTKDIQLFKIINHEKIKGNYIRFYFLAGERALKDY 221

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             + +  K L          ++  +++  +E +K++
Sbjct: 222 SFKHKLSKDLCHVFSCKDYEIMEMLDKTLDEKKKIE 257


>gi|229151818|ref|ZP_04280017.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1550]
 gi|228631631|gb|EEK88261.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1550]
          Length = 411

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 36/259 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I++  R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWDRRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +     K+I+   N I+ +N P+  + MN E+A              + +RVV +E ++ 
Sbjct: 150 VE----KAIQI-ANKIVFENHPIRIQWMNLEEA--KRLPLRKEPTMTENIRVVMIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEI 763
           ++  L  S+ ++  +V ++
Sbjct: 255 VSKQLNSSETDIPAKVAQL 273


>gi|227873441|ref|ZP_03991696.1| alanyl-tRNA synthetase [Oribacterium sinus F0268]
 gi|227840746|gb|EEJ51121.1| alanyl-tRNA synthetase [Oribacterium sinus F0268]
          Length = 408

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 83/215 (38%), Gaps = 28/215 (13%)

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           ++ FY E GGQ  D G   G   +L   + +      +      E   +R +       D
Sbjct: 15  ESFFYPEGGGQPCDRGSIAG--AKLLFVEEKDGELWQYTEADFPEGAKVRCQ------FD 66

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR  S NHSA H+    +S       S        +     V      +  EL+ +E
Sbjct: 67  TDFRRWQSENHSAEHIFSGLVSKRFSYKNSGFHMECFGENPHMTVDFDGEFSEKELEELE 126

Query: 637 DNVNDIIAQNLPVVT--------RIMNREDAIAS--GAAALLGTKYNDRVRVVSVEYEDG 686
             VN +I +NLP+          R + R+D   S     AL G      +R++ +   D 
Sbjct: 127 QGVNAVIRKNLPIREIYLEGEEDRSLERKDGSISFRQKKALEGD-----IRIIEIPKVD- 180

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
               S  C GTHVS TGEI +  I+S    R G R
Sbjct: 181 ----SCACCGTHVSFTGEIGVFTILSYEKHRKGCR 211


>gi|170695920|ref|ZP_02887060.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139218|gb|EDT07406.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 635

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +S+P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYSRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R +A+    +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRGEAVDYFKS--IGEKYKAEI-IESIPATDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|16079947|ref|NP_390773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310836|ref|ZP_03592683.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315161|ref|ZP_03596966.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221324361|ref|ZP_03605655.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|135175|sp|P18255|SYT1_BACSU RecName: Full=Threonyl-tRNA synthetase 1; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|143766|gb|AAA22864.1| (thrSv) (EC 6.1.1.3) [Bacillus subtilis]
 gi|1769999|emb|CAA99608.1| threonyl-tRNA-synthetase [Bacillus subtilis]
 gi|2293284|gb|AAC00362.1| threonine tRNA synthetase [Bacillus subtilis]
 gi|2635360|emb|CAB14855.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 643

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL  A+  I        G  I  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSAAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMDEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
            NLP+V + ++RE+A A  A     L  +  D +     VS+ YE G      LC G HV
Sbjct: 133 ANLPIVRKEVSREEAKARFAEIGDDLKLELLDAIPEGETVSI-YEQGEFFD--LCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I    ++S
Sbjct: 190 PSTGKIKEFKLLS 202


>gi|296163127|ref|ZP_06845898.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295886629|gb|EFG66476.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 635

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYNRPFTPEDLEKIERRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+    +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEI-IESIPATDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|150006475|ref|YP_001301219.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294775423|ref|ZP_06740938.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides vulgatus PC510]
 gi|149934899|gb|ABR41597.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294450743|gb|EFG19228.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides vulgatus PC510]
          Length = 152

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 18/145 (12%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPI 627
           +++  N+++    H+  H+++  +  + G      +H+ +  S       + D       
Sbjct: 5   SLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAISAHIERKKS-------KLDFALQTCP 57

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             A++  IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V     G
Sbjct: 58  EEADIIRIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----G 112

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
            +   LC G HV +T EI    I+S
Sbjct: 113 DYDECLCIGQHVKNTSEIGTFKIIS 137


>gi|254881607|ref|ZP_05254317.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|319642992|ref|ZP_07997626.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|254834400|gb|EET14709.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|317385357|gb|EFV66302.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 152

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 18/145 (12%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPI 627
           +++  N+++    H+  H+++  +  + G      +H+ +  S       + D       
Sbjct: 5   SLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAISAHIERKKS-------KLDFALQTCP 57

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             A++  IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V     G
Sbjct: 58  EEADIIRIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----G 112

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
            +   LC G HV +T EI    I+S
Sbjct: 113 DYDECLCIGQHVENTSEIGTFKIIS 137


>gi|122889667|emb|CAM14330.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|123236421|emb|CAM21014.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 525

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 39/309 (12%)

Query: 474 KVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAE 523
           KV  ++PP     +D T  V S   A     E+  +A  G+K       VV + T  + E
Sbjct: 112 KVSTKRPPPAMDDLDFTTTVVSCSPA-----ELQTDASGGKKEVLSGFHVVLEDTLLFPE 166

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D G  I D   L++T  ++ A+      + +  G       + + +D++ R   
Sbjct: 167 GGGQPDDRG-TINDISVLRVT--RRGAQADHFTESPLSPG-----SQVQVRVDWERRFDH 218

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS  HL+      + G   +          +  D   S  +T+ ++ +IE +VN  I
Sbjct: 219 MQQHSGQHLITAVADLLFGLKTTSWELGRLRSVIELD---SPSVTAEQVAAIEQSVNQKI 275

Query: 644 AQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
              LPV  R ++ +D  +       L   +   +RVV++E    GV S+ +C GTHVS+ 
Sbjct: 276 RDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIE----GVDSN-MCCGTHVSNL 330

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++ ++ I+     +     +  + G R    +       K+L S LK         VE+
Sbjct: 331 SDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCG-------VED 383

Query: 763 IWEEYRKLQ 771
             E  +KLQ
Sbjct: 384 HVEAVKKLQ 392


>gi|229047304|ref|ZP_04192903.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH676]
 gi|228724046|gb|EEL75392.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH676]
          Length = 367

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 34/256 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            ++T FY   GGQ  DTG  + D   + + ++  +     + H I E+  L TE  +   
Sbjct: 1   MNETAFYPTGGGQPYDTGT-LNDINVINVEEINGE-----IRHYIAEQ--LHTE-DIEGK 51

Query: 575 IDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ + 
Sbjct: 52  INWERRFDHMQQHAAQHILSAAFWDHFNMPTI-GFHLGK--ETVTID-LETENLHAETVE 107

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGG 687
               K+I+   N I+ QN P+  + MN E+A              + +RVV +E ++  G
Sbjct: 108 ----KAIQI-ANKIVFQNHPIRIQWMNLEEA--KTLPLRKEPTMTENIRVVMIENFDYNG 160

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K+++ 
Sbjct: 161 ------CGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNVSK 213

Query: 748 FLKVSQGNVVGRVEEI 763
            L  S+ ++  +V ++
Sbjct: 214 QLNSSETDIPTKVAQL 229


>gi|125987702|sp|Q9BTE6|AASD1_HUMAN RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
          Length = 412

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 142/328 (43%), Gaps = 47/328 (14%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G  I D   L++T   ++A+          +
Sbjct: 35  KEVLSG--FQVVLEDTVLFPEGGGQPDDRG-TINDISVLRVTRRGEQADHF-------TQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDV 621
             L     +++ +D++ R      HS  HL+     T +  H+ +  +     G  R  +
Sbjct: 85  TPLDPGSQVLVRVDWERRFDHMQQHSGQHLI-----TAVADHLFKLKTTSWELGRFRSAI 139

Query: 622 THSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVV 679
               P +T+ ++ +IE +VN+ I   LPV  R ++ +D  +   +   L   +   +RVV
Sbjct: 140 ELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVV 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ++E  D     S +C GTHVS+  ++ ++ I+     +     +  ++G R    +    
Sbjct: 200 NIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSH 254

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---------- 789
              K+L + LK    + V  V+++    + LQ    K  L L + DL+ H          
Sbjct: 255 GTEKALTALLKCGAEDHVEAVKKLQNSTKILQ----KNNLNL-LRDLAVHIAHSLRNSPD 309

Query: 790 ---------KIADVNFMSHIISEVDSKE 808
                    K  D  FM+ I +E+ S+E
Sbjct: 310 WGGVVILHRKEGDSEFMNIIANEIGSEE 337


>gi|163784882|ref|ZP_02179652.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879851|gb|EDP73585.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 93

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           EL+ + D  + K+   +I+L  I KEK K ++++ V+++L D++ A  + +  A+V+GG 
Sbjct: 5   ELRDLADVAKAKLGKSVILLSSIDKEKGKINMVVSVSKELTDKYKAGQIIKEVAQVIGGK 64

Query: 867 GGGGRPHMAQSGGPNGNKADQA 888
           GGG RP MAQ GG   +K D+A
Sbjct: 65  GGG-RPDMAQGGGTQIDKLDEA 85


>gi|21226335|ref|NP_632257.1| alanyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|20904584|gb|AAM29929.1| Alanyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 270

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 33/220 (15%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAI 559
           VE+   G+ +  V D+T FY E+GGQ  DTG  +   DG   ++    K    I   H I
Sbjct: 38  VEKVTEGKYI--VLDRTAFYPESGGQPSDTGKLVRERDGAEFKVVYAGKFNGDI--SHEI 93

Query: 560 VERGI-----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
              G      L+    +   ID+  R +    H+ATH++ + +    G+ ++ N   +  
Sbjct: 94  SPEGETGAEGLKVGDKVKGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQLGLDQ 153

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---------IASGAA 665
             + F +        AE + I    N+IIA+N  V   +++R++A         +A G +
Sbjct: 154 SRVDFSLEAFDREKFAEYEKI---ANEIIAENHSVNLYLVSRKEAEERLSRLTTLAKGFS 210

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             +       VR+V +E    GV   A CGG+H+ +TGEI
Sbjct: 211 EEI-----TEVRLVEIE----GVTIEA-CGGSHLKNTGEI 240


>gi|121610033|ref|YP_997840.1| threonyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|166225514|sp|A1WMG5|SYT_VEREI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121554673|gb|ABM58822.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Verminephrobacter eiseniae EF01-2]
          Length = 639

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L ++E  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVID-NGFYYDFAYQRPFTPDDLVAMEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++ PV+ R++ R+ AIA      LG  Y   +         VS+ Y +G      LC G 
Sbjct: 130 KDEPVLRRVLPRDAAIAYFKG--LGEHYKAEIIAGIPGDEEVSL-YREGSFED--LCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++    ++
Sbjct: 185 HVPSTGKLKFFKLM 198


>gi|288802262|ref|ZP_06407702.1| alpha-amylase family protein [Prevotella melaninogenica D18]
 gi|288335229|gb|EFC73664.1| alpha-amylase family protein [Prevotella melaninogenica D18]
          Length = 721

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 574 TIDY----QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           T+DY     N+ +    H+A HLL+  +  + G+  S N            +   KP + 
Sbjct: 566 TVDYVLNAHNKEEFPPAHTAEHLLNQVMMRMFGAERSNNAHIERKKSKMTFILDHKP-SR 624

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA++LPV   +++R +         L    ++ +R+V +     G  
Sbjct: 625 KEEKAIEDEMNRLIAEDLPVTFEMIDRNNIPEGVDVGKLPEDASEMLRLVRI-----GDF 679

Query: 690 SSALCGGTHVSSTGEI 705
              LC G HV ST +I
Sbjct: 680 DVCLCIGKHVRSTAQI 695


>gi|317121664|ref|YP_004101667.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591644|gb|ADU50940.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 644

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG-----DTGCAIGDGIRLQITDVQKKAE 551
           +   IV E   G K EV    TP   E   Q+G     D   A  +G   QI D+ +  E
Sbjct: 4   EPARIVVELPDGSKREVPRGITPL--EVAQQIGPRLARDAVAARWNG---QIVDLNRPLE 58

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
                    E G L      +LT   +  R++   HS  HL+  A+  +        G  
Sbjct: 59  ---------EDGRLE-----ILTFADEAGREV-YRHSTAHLMAQAVKRLWPEAQLAVGPP 103

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D+   +P+++ +L++IE  +  I+A++LP+  R ++R++A+    A   G +
Sbjct: 104 LE-DGFFYDIETPRPLSTDDLEAIEKEMARIVAEDLPIRRRPVSRQEALDLFRAR--GER 160

Query: 672 YNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEI 705
           Y   +     E E   V+       LC G H+ STG I
Sbjct: 161 YKIEIIEAIPEDEPLTVYEQGEFVDLCRGPHLPSTGRI 198


>gi|113867357|ref|YP_725846.1| threonyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123134164|sp|Q0KBZ3|SYT_RALEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113526133|emb|CAJ92478.1| Threonyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 635

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLAAIEKKMTELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV  + NR++A+A   +  +G KY   +       ++ G++       LC G HV 
Sbjct: 130 KDEKVVREVWNRDEAVALFES--MGEKYKAEIIASIPADQEIGLYREGSFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|75762317|ref|ZP_00742198.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228902122|ref|ZP_04066286.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           4222]
 gi|74490200|gb|EAO53535.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228857548|gb|EEN02044.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           4222]
          Length = 411

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 178/401 (44%), Gaps = 51/401 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H IVE+  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGT-LNDIDVINVEEIHGE-----IRHFIVEK--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LEIENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A      +  N I+ +N  +    MN E A              + +RVV +E ++ 
Sbjct: 150 VEKAI-----NIANKIVFENHQIHIEWMNLEKA--KTFPLRKEPTITENIRVVIIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNF 796
           ++  L  S+ ++  +V ++     E  + +Q ++ K       +L ++ +  H  AD+  
Sbjct: 255 VSKQLNSSESDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIH--ADI-L 311

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +S + +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L 
Sbjct: 312 ISKVFTNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LL 368

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + +   + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 369 KDALPTIEGKGGGNKKS-ARGGGRAIMSGDEFLNQLVSSLQ 408


>gi|160871539|ref|ZP_02061671.1| threonyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120338|gb|EDP45676.1| threonyl-tRNA synthetase [Rickettsiella grylli]
          Length = 642

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 13/131 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D   S P T  +L +IE  + +++ 
Sbjct: 71  IRHSTAHLLAHAVKQLFPMAQVTMGPVIE-NGFYYDFALSHPFTPEDLLNIEKRMRELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           Q++P+    + R++AI    A  LG  Y   +        V+S+ Y +G      LC G 
Sbjct: 130 QDIPIQRSTLPRDEAIQFFKA--LGEDYKAEIITAIPKEEVLSL-YREGDF--VDLCRGP 184

Query: 698 HVSSTGEIMLL 708
           HV STG++ + 
Sbjct: 185 HVPSTGKLKVF 195


>gi|304436955|ref|ZP_07396918.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369906|gb|EFM23568.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 639

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 14/142 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSA 630
           VLT D +  R  ++ H+A H++  A+  +   SHV         +G  +D      +T A
Sbjct: 59  VLTFDDEGGRH-ALRHTAAHVMAQAVKRLYPESHVQLAIGPAIENGFYYDFDMEHQLTDA 117

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGV- 688
           +L+ IE  +  I+ +NLP+V R + R +AI     AL   K  N +V ++    ED  + 
Sbjct: 118 DLRDIEKEMKKIVKENLPLVRREIPRAEAI-----ALFREKGENYKVELIEDLPEDEVIS 172

Query: 689 -----HSSALCGGTHVSSTGEI 705
                  + LC G HV STG++
Sbjct: 173 LYTQGEFTDLCAGPHVVSTGKV 194


>gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166223349|sp|A6SY30|SYT_JANMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151280543|gb|ABR88953.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 635

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLVAIEKKMTELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++ PV  ++M R++A+A   +  +G  Y   +       + VS+ Y +G    + LC G 
Sbjct: 130 KDEPVTRKVMPRDEAVAYFKS--IGEAYKAEIIESIPADQEVSL-YTEGKF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|229149979|ref|ZP_04278204.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1550]
 gi|228633417|gb|EEK90021.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1550]
          Length = 142

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 19/145 (13%)

Query: 592 LLHHALSTILGSHVSQ------NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           + HH+L  ++G+ V +       G+ I PD  R D    + ++S E++ I + VN +I Q
Sbjct: 1   MRHHSLLHLIGAVVYEKYGALCTGNQIYPDKARIDFNELQELSSVEVEEIVEEVNKLIKQ 60

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  + TR M+RE+  A  A  ++ T  N        +R+V++E  D        CGGTHV
Sbjct: 61  NKEISTRYMSREE--AENAVGMIKTAINLLPTTIQEIRIVTIENLD-----EQACGGTHV 113

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIE 724
            +T EI  L I    S     RR E
Sbjct: 114 KNTSEIGTLVIDKVKSKGKQNRRFE 138


>gi|255638817|gb|ACU19712.1| unknown [Glycine max]
          Length = 262

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 31/223 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQKKAEGIFVHHAIVE------RG 563
           +  D+T FY + GGQ  DTG  +  G    +  ++DV+ K +GI  H+   E        
Sbjct: 41  LTLDRTIFYPQGGGQPADTGFVLIHGFDNNKFLVSDVRSK-DGIVFHYGFFENLGGEFEP 99

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG--LRFDV 621
            L     + L +D   R+  S  HSA HLL   L  I   ++    +   PDG  + +  
Sbjct: 100 TLEKGKEVSLFVDQPRRKLNSRLHSAGHLLDICLPRIGLGNLEPGKAYHFPDGPWVEYKG 159

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----- 676
           T S+    ++ K +E   N +I+    V   I+  ++     AA L G    D V     
Sbjct: 160 TISQNEMQSKQKDLELEANALISMGGKVSVDILPYDE-----AAKLCGGCLPDYVPKEST 214

Query: 677 -RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
            R+V +    G       CGGTHV+   +I  + +   S IR+
Sbjct: 215 PRIVRIRDNPG-----CPCGGTHVADISDIKQIKV---SQIRS 249


>gi|290463151|sp|Q8Q0A4|ALAXM_METMA RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           Short=AlaXp; AltName: Full=Alanyl-tRNA deacylase AlaX-M
          Length = 251

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 33/220 (15%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAI 559
           VE+   G+ +  V D+T FY E+GGQ  DTG  +   DG   ++    K    I   H I
Sbjct: 19  VEKVTEGKYI--VLDRTAFYPESGGQPSDTGKLVRERDGAEFKVVYAGKFNGDI--SHEI 74

Query: 560 VERGI-----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
              G      L+    +   ID+  R +    H+ATH++ + +    G+ ++ N   +  
Sbjct: 75  SPEGETGAEGLKVGDKVKGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQITGNQLGLDQ 134

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---------IASGAA 665
             + F +        AE + I    N+IIA+N  V   +++R++A         +A G +
Sbjct: 135 SRVDFSLEAFDREKFAEYEKI---ANEIIAENHSVNLYLVSRKEAEERLSRLTTLAKGFS 191

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             +       VR+V +E    GV   A CGG+H+ +TGEI
Sbjct: 192 EEI-----TEVRLVEIE----GVTIEA-CGGSHLKNTGEI 221


>gi|323526736|ref|YP_004228889.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383738|gb|ADX55829.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 635

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYHRPFTPEDLERIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+    +  +G KY   + + S+        Y  GG   + LC G 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEI-IESIPASDEIKLYSHGGF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|170290346|ref|YP_001737162.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174426|gb|ACB07479.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 247

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 14/216 (6%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G    VV D + F+   GGQ  D G   G+G   ++  V +  + I ++  ++ RG L  
Sbjct: 38  GSYYYVVPDSSIFHPLGGGQPSDQGWIRGEGFEAEVRKVLESDDVIVIYCKLI-RGDLEG 96

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E    L  D++ R  +   H+A H++  AL+ ++G  V   G+   P   R  V +   I
Sbjct: 97  EAEQEL--DWEKRYLVMRLHTAGHVIDRALADLMG-RVETLGAFHGPP--RAYVDYRASI 151

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRVVSVEYED 685
             + L  IE   N+++ +   V+ R +  ED   +  GA  L      +R R+V ++   
Sbjct: 152 DESLLPEIERGANELLGER-EVIVREVAPEDLEKVIYGAPNLGRLPRAERYRIVEIK--- 207

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GV++   C GTHV +  E+  + I     +  G R
Sbjct: 208 -GVNAMP-CTGTHVRNAAEVGRISITGIERVEGGTR 241


>gi|304406649|ref|ZP_07388304.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304344182|gb|EFM10021.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 645

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 25/201 (12%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G  + D   +I  G  LQ   V  K +G  V          + E   ++T+D  +  +
Sbjct: 16  ESGATIDDVAGSISKG--LQKNAVAGKIDGKVVDIYTPIEADAKVE---IVTLDSADGLE 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   HS  HL+  A+  + G+   + G   +  DG  +D+   + +T  +L  IE  +  
Sbjct: 71  V-YRHSTAHLMAQAIKRLYGNTAVKLGIGPVIEDGFYYDIDLEQSLTPEDLVKIEKEMAK 129

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSS 691
           I+ ++LP+  R++ RE+AIA+       T+  D +++  +           Y+ G     
Sbjct: 130 IVKEDLPIRRRVVGREEAIAT------FTELGDPLKLELIRDLPENVELTIYDQGEFFD- 182

Query: 692 ALCGGTHVSSTGEIMLLYIVS 712
            LC G H+ STG I    ++S
Sbjct: 183 -LCRGPHLPSTGRIKAFKLLS 202


>gi|153007207|ref|YP_001381532.1| threonyl/alanyl tRNA synthetase SAD [Anaeromyxobacter sp. Fw109-5]
 gi|152030780|gb|ABS28548.1| Threonyl/alanyl tRNA synthetase SAD [Anaeromyxobacter sp. Fw109-5]
          Length = 401

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 29/227 (12%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTE 568
           +  V+ D+T FY E GGQ  D G   G    + + DV++   E + V       G     
Sbjct: 28  RAAVLLDRTAFYPEGGGQPADRGSLGG----VPVVDVRELGGEILHVLAGPAPAG----- 78

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVTH 623
             +   +D Q RR     H   HLL  A     G+     H+ +    I  D        
Sbjct: 79  -KVAGRVDGQRRRDHVQQHHGQHLLSAAFEGARGARTLSFHLGEATCTIDLD------AP 131

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRVVSV 681
           +  +    L+++E   N ++  +LPV  R ++  D  A+    A   G     RV VV  
Sbjct: 132 AASLDEGALRAVEAAANALVFADLPVEARELSPADLDALPLRKAPTKGA----RVVVVGE 187

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
               GG+  ++ CGGTH   TGE+  + ++      AG  R+E + G
Sbjct: 188 AGTPGGIVDASPCGGTHPRRTGEVGAIAVLGVQKWGAG-SRVEFVCG 233


>gi|312870162|ref|ZP_07730296.1| threonine/alanine tRNA ligase second additional domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311094357|gb|EFQ52667.1| threonine/alanine tRNA ligase second additional domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 251

 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 18/207 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           VS  +  +  DQT  Y   GGQ  D    + +    Q+ ++++  E    +   ++R I+
Sbjct: 33  VSADRRWISLDQTIIYPGGGGQPADQAKLLINEEWYQVVEIRRGQEDGISYK--LDRPIV 90

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             + +  + ID+  R Q    H+  H++   L     + V+ +G  I  D  R +V   +
Sbjct: 91  GDDQAAFIQIDWAFRYQNMRYHTLLHIISGYLYRKYHALVTSSG--IMSDHARLEVEFQE 148

Query: 626 PITSAELKS--IEDNVNDIIAQNLPVVT-----RIMNREDAIASGAAALLGTKYNDRVRV 678
               +E     I  N+  +I  + PV T       +N ED I +    +  +  N  VR+
Sbjct: 149 DNVPSEFDPELITQNIQQLIKDDFPVTTATIDRNTLNEEDLIRTYTNLIPKSITN--VRL 206

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEI 705
           V +     G      C GTHV+STGE+
Sbjct: 207 VKI-----GDFDEQACAGTHVASTGEV 228


>gi|296201512|ref|XP_002806858.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA editing protein
           Aarsd1-like [Callithrix jacchus]
          Length = 608

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 43/331 (12%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K      +VV + T  + 
Sbjct: 194 KKVSTKRPPPAMDDLDFTTTVVSCRPA-----ELQTEGSNGKKEVLSGFQVVLEDTLLFP 248

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  I D   L++T   ++A+          +  L     +++ +D++ R  
Sbjct: 249 EGGGQPDDHG-TINDIPVLKVTRRGEQADHF-------TQTPLEPGSQVLVQVDWERRFD 300

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT---HSKPITSAELKSIEDNV 639
               HS  HL+     T +  H+ +  +     G RF       S  +T+ ++ +IE +V
Sbjct: 301 HMQQHSGQHLI-----TAVADHLFKLKTTSWELG-RFRSVIELDSPSVTAEQVAAIEQSV 354

Query: 640 NDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N+ I   LPV  + ++ +D  +       L   +   +RVV+++  D     S +C GTH
Sbjct: 355 NEKIRDRLPVNVQELSLDDPEVEQVRGRGLPDDHAGPIRVVTIKGVD-----SNMCCGTH 409

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           VS+  ++ ++ ++     +     +  + G R    +       K+L + LK    + V 
Sbjct: 410 VSNLSDLQVIKMLGTEKGKKNKTNLIFLAGNRVLKWMGRSHGTEKALTALLKCGAEDHVE 469

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            V+++    + LQ    K  L L + DL+ H
Sbjct: 470 AVKKLQNSTKLLQ----KNNLSL-LRDLAVH 495


>gi|212691330|ref|ZP_03299458.1| hypothetical protein BACDOR_00822 [Bacteroides dorei DSM 17855]
 gi|237712222|ref|ZP_04542703.1| alanyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237726368|ref|ZP_04556849.1| alanyl-tRNA synthetase [Bacteroides sp. D4]
 gi|212666083|gb|EEB26655.1| hypothetical protein BACDOR_00822 [Bacteroides dorei DSM 17855]
 gi|229434894|gb|EEO44971.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453543|gb|EEO59264.1| alanyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 152

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 18/145 (12%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPI 627
           +++  N+++    H+  H+++  +  + G      +H+ +  S       + D       
Sbjct: 5   SLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAISAHIERKKS-------KLDFALQTCP 57

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
              ++  IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V     G
Sbjct: 58  EETDITRIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----G 112

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
            +   LC G HV +T EI    I+S
Sbjct: 113 DYDECLCIGQHVKNTSEIGTFKIIS 137


>gi|145589014|ref|YP_001155611.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083617|sp|A4SX33|SYT_POLSQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145047420|gb|ABP34047.1| Ser-tRNA(Thr) hydrolase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 640

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 15/194 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EA  ++ D   +IG G+        K A G  V   +V+   +  + S +  I  ++   
Sbjct: 15  EAPVRVADVAQSIGSGL-------AKAALGGIVDGQMVDTSFVIDKDSHLAIITDKSPEA 67

Query: 583 LSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           L I  HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L ++E  + +
Sbjct: 68  LEIVRHSTAHLLAYAVKELFPEAQVTIGPVIE-NGFYYDFSYHRPFTPDDLVALEKKMTE 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGT 697
           +  ++ PVV  +M R++A+        G  Y   +     + ED  +++      LC G 
Sbjct: 127 LAKKDEPVVRTVMPRDEAVEFFKQQ--GENYKAELIASIPQGEDVSLYAEGKFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|53719558|ref|YP_108544.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|53725296|ref|YP_102787.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76810857|ref|YP_333290.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121600801|ref|YP_992866.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124385818|ref|YP_001026205.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126441516|ref|YP_001058752.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126449349|ref|YP_001080524.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126453502|ref|YP_001066005.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134282197|ref|ZP_01768902.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167003090|ref|ZP_02268880.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167719848|ref|ZP_02403084.1| threonyl-tRNA synthetase [Burkholderia pseudomallei DM98]
 gi|167738851|ref|ZP_02411625.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816071|ref|ZP_02447751.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824445|ref|ZP_02455916.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167845979|ref|ZP_02471487.1| threonyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894556|ref|ZP_02481958.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167902959|ref|ZP_02490164.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911196|ref|ZP_02498287.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919220|ref|ZP_02506311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423341|ref|ZP_03454842.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226199711|ref|ZP_03795264.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237812016|ref|YP_002896467.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238562605|ref|ZP_04610138.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242317788|ref|ZP_04816804.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254177492|ref|ZP_04884147.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180004|ref|ZP_04886603.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188582|ref|ZP_04895093.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197889|ref|ZP_04904311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254199739|ref|ZP_04906105.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254206061|ref|ZP_04912413.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254259413|ref|ZP_04950467.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297839|ref|ZP_04965292.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358432|ref|ZP_04974705.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|73919776|sp|Q62KI2|SYT_BURMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919777|sp|Q63TM2|SYT_BURPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771913|sp|Q3JT13|SYT_BURP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223324|sp|A3MJT8|SYT_BURM7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223325|sp|A2S2N6|SYT_BURM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223326|sp|A1V3R3|SYT_BURMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223327|sp|A3NUI4|SYT_BURP0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223328|sp|A3N8T1|SYT_BURP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52209972|emb|CAH35944.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|52428719|gb|AAU49312.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76580310|gb|ABA49785.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229611|gb|ABM52129.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124293838|gb|ABN03107.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126221009|gb|ABN84515.1| threonine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126227144|gb|ABN90684.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242219|gb|ABO05312.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134246235|gb|EBA46324.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|147749335|gb|EDK56409.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753504|gb|EDK60569.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148027559|gb|EDK85580.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157806992|gb|EDO84162.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936261|gb|EDO91931.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698531|gb|EDP88501.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169654630|gb|EDS87323.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210544|gb|EDU07587.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393199|gb|EEC33220.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225928297|gb|EEH24331.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237505158|gb|ACQ97476.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238522290|gb|EEP85735.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242141027|gb|EES27429.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243061341|gb|EES43527.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254218102|gb|EET07486.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 635

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFYYDFSYHRPFTPEDLEAIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG---GVHSS--ALCGGTHV 699
           ++ PV  R+++R++A++   +  +G KY   + + S+   D      H S   LC G HV
Sbjct: 130 RDEPVTRRVVSRDEAVSYFRS--IGEKYKAEI-IESIPASDEIKLYSHGSFTDLCRGPHV 186

Query: 700 SSTGEIMLLYIV 711
            STG++ +  ++
Sbjct: 187 PSTGKLKVFKLM 198


>gi|332158282|ref|YP_004423561.1| alanyl-tRNA synthetase-related protein [Pyrococcus sp. NA2]
 gi|331033745|gb|AEC51557.1| alanyl-tRNA synthetase-related protein [Pyrococcus sp. NA2]
          Length = 213

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 43/220 (19%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +++ DQT FY   GGQ  D G   G    +++ DV K  +G  V H + E    +    +
Sbjct: 26  DLLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEQG-NVWHVVKEPEKFKVGDEV 80

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSA 630
            L ID+  R +L   H+  HLL H L+ +LG    Q  GS ++ +  R+D+ + + +   
Sbjct: 81  ELKIDWDYRYRLMRIHTGLHLLEHVLNEVLGEGKWQLVGSGMSVEKGRYDIAYPENLNKY 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           + + IE                               L  KY D    V + +E    ++
Sbjct: 141 KDQIIE-------------------------------LFNKYVDEGGEVKIWWEGETRYT 169

Query: 691 SAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV    E+  +  +  SSI  G +R+E
Sbjct: 170 QIRDFEVIPCGGTHVRDIKEVGHIKKLKRSSIGRGKQRLE 209


>gi|323702723|ref|ZP_08114384.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532386|gb|EGB22264.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 12/140 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT + +  R +   HS  H+L  A+  +        G  I  DG  +D    +P T AE
Sbjct: 59  LLTFNDEEGRHV-YRHSTAHVLAQAVKRLFPDTKLAIGPAIQ-DGFYYDFDVDRPFTPAE 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS- 690
           L+ IE  +N II ++LP     ++RE+A+     A  G  Y  +V +++   ED  +   
Sbjct: 117 LEQIEAEMNKIIKEDLPFERVEISREEALERFGKA--GEIY--KVELINDLPEDAVISCY 172

Query: 691 -----SALCGGTHVSSTGEI 705
                + LC G HV STG +
Sbjct: 173 KQGDFTDLCAGPHVPSTGRL 192


>gi|323486959|ref|ZP_08092274.1| alanyl-tRNA synthetase [Clostridium symbiosum WAL-14163]
 gi|323399731|gb|EGA92114.1| alanyl-tRNA synthetase [Clostridium symbiosum WAL-14163]
          Length = 61

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF 50
          V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K IF
Sbjct: 6  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKTIF 52


>gi|238018994|ref|ZP_04599420.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
 gi|237864478|gb|EEP65768.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
          Length = 636

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 72  TLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHTLTPEDLGKIEKEMSRIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M+R++AI         +K  D +V ++    ED  +   A      LC G
Sbjct: 131 KENLPITKSVMSRQEAI-----EFFKSKNEDYKVELIEDLPEDAVISCYAQGDFIDLCAG 185

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 186 PHVASTGKV 194


>gi|163759477|ref|ZP_02166562.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283074|gb|EDQ33360.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 237

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 25/206 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           ++ DQT FYA +GGQ GDTG      G+ I +  T V  +++   +H  I   G     +
Sbjct: 27  IMLDQTCFYATSGGQPGDTGFLERTNGEKIIIAGT-VTGESKSEIIH--IPAPGRSARAV 83

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPIT 628
             V+ ID+            T +    L + LG   +  +G+ ++    R D   S+ I 
Sbjct: 84  RAVMHIDWSG---------GTLMRCTPLPSTLGGLPLPDHGAAVSETDSRIDFDMSETID 134

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
            AE+ +    + +++  N P+ T+ ++ +D  A+     +  +   +  DR+R+V +   
Sbjct: 135 KAEVTA---KLMELVNANHPIFTQWISEDDLAANPDLVKSKNVRPPRGQDRIRLVCI--G 189

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYI 710
           +G    S  CGGTHVS T E+  ++I
Sbjct: 190 EGSAIDSQPCGGTHVSETAEVGEIHI 215


>gi|18976458|ref|NP_577815.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
 gi|18891997|gb|AAL80210.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
          Length = 214

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 43/219 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H + E    +    + 
Sbjct: 27  LLLDQTIFYPTGGGQPHDRGWING----VEVLDVYKDEEG-NVWHVVKELEKFKPGDEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAE 631
           L +D++ R +L   HSA HLL + L  ILG  +    GS +T +  R DV + + + + +
Sbjct: 82  LKLDWEYRYKLMRIHSALHLLENVLDQILGKGNWEVVGSGMTHEKGRLDVGYPENLNAYK 141

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            K IE                               L  +Y D    + + +E    ++ 
Sbjct: 142 EKIIE-------------------------------LFNRYVDEGGEIKIWWEGEKRYTQ 170

Query: 692 AL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 171 IRDFDPIPCGGTHVKDIREIGHIKKLKRSSIGRGKQRLE 209


>gi|257869188|ref|ZP_05648841.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803352|gb|EEV32174.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 646

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 15/160 (9%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           ++RGI       ++T D+++   L + HSA HL+  A+  +  +     G  I   G  +
Sbjct: 48  LDRGIEEDAQIEIVTPDHEDALGL-VRHSAAHLMAQAMRRLYPNIHFGVGPAID-TGFYY 105

Query: 620 DVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           D  + + PIT+ +L +IE  +  I+ +NLP+  R++++++A+       L  +   +V +
Sbjct: 106 DTDNGESPITAEDLPAIEAEMMKIVKENLPIERRVLSKKEALE------LFAEDPYKVEL 159

Query: 679 VSVEYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVS 712
           +S   ED  + +        LC G HV STG I +  ++S
Sbjct: 160 ISELPEDETITAYQQGEFVDLCRGPHVPSTGRIQVFKLLS 199


>gi|13924631|gb|AAK49080.1|AF258288_1 alanyl-tRNA synthetase [Brassica napus]
          Length = 107

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++KSL S LKV   +V  RV+
Sbjct: 1   TAEIRSFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKSLCSILKVKAEDVTNRVD 60

Query: 762 EIWEEYR 768
            + EE R
Sbjct: 61  NLLEELR 67


>gi|301163594|emb|CBW23145.1| putative alanyl-tRNA synthetase (fragment) [Bacteroides fragilis
           638R]
          Length = 154

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+++    H+A HLL+  +    G   S+N   I     + D       T  ++ +IE+
Sbjct: 10  HNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IEKKKSKCDYELPTCPTEEQIHAIEE 68

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I ++LPV    M  E+A +    + L    ++ +R+V +     G + +  C G 
Sbjct: 69  KVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASETLRIVRI-----GDYDACACIGQ 123

Query: 698 HVSSTGEIMLLYIVS 712
           HV +T EI L  I+S
Sbjct: 124 HVENTSEIGLFKIIS 138


>gi|269139965|ref|YP_003296666.1| hypothetical protein ETAE_2620 [Edwardsiella tarda EIB202]
 gi|267985626|gb|ACY85455.1| hypothetical protein ETAE_2620 [Edwardsiella tarda EIB202]
 gi|304559799|gb|ADM42463.1| alanyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 255

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 43/211 (20%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKK--------AEGIFVHHAIVERG 563
           VFD+T FYAE+GGQ+ D G  +    G    + DVQ K         EG+ V    VE  
Sbjct: 42  VFDRTIFYAESGGQVCDVGAIVSAAGGTPCPVVDVQHKLGHKLYIKREGVNVPLVAVETR 101

Query: 564 I---------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           I         L+    +++ ID+  R  +  +H+  H L  A++    + +   G  I  
Sbjct: 102 IVHRLAYAPDLQPGDRVIMQIDWPRRYAIMRHHTLAHFLFSAVNRYFSAGIGIKGCTIDA 161

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
               F +   K ++  +  +I+ +  D++AQ  P+        D+       L   +Y +
Sbjct: 162 QKAVFSL--DKKLSEDDFCAIQAHTRDLLAQAHPLAVESAPETDS-------LFYWRYGE 212

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +                 CGGTHV +  E+
Sbjct: 213 TL---------------IPCGGTHVQALSEV 228


>gi|237713560|ref|ZP_04544041.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262406342|ref|ZP_06082891.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|229446282|gb|EEO52073.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262355045|gb|EEZ04136.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
          Length = 162

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +    G   S+N   I     + D   S   T+ +++SIE+ VN+ I+QN
Sbjct: 23  HTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSCPTAEQIQSIEETVNEAISQN 81

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV    M  E A      + L    +  +R+V +     G + +  C G HVS+T E+ 
Sbjct: 82  LPVTIEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GDYDACACIGLHVSNTSEMG 136

Query: 707 LLYIVS 712
              I+S
Sbjct: 137 TFKIIS 142


>gi|293376470|ref|ZP_06622699.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325842051|ref|ZP_08167588.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644892|gb|EFF62973.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325489773|gb|EGC92129.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 645

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           INHSA HL+  A+  +        G  I  DG  +D+     I+ A+L +IE  +  I +
Sbjct: 71  INHSAAHLMAAAIKRLYPDAKFGVGPAIE-DGFYYDIDTESKISEADLPAIEKMMQKISS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR--VVSVEYEDGGVHSSALCGGTHVSST 702
           + LP++ + ++RE+A    AA     +  D ++   +   Y +G    + LC G HV +T
Sbjct: 130 EALPIIRQELSREEAKELFAADEYKLELIDAIKEGEIITTYSEGDF--TDLCSGVHVPNT 187

Query: 703 GEIMLLYIVS 712
            ++    ++S
Sbjct: 188 KDVKFFKLLS 197


>gi|294643224|ref|ZP_06721050.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CC 2a]
 gi|294806650|ref|ZP_06765484.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292641347|gb|EFF59539.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CC 2a]
 gi|294446186|gb|EFG14819.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 141

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +    G   S+N   I     + D   S   T+ +++SIE+ VN+ I+QN
Sbjct: 2   HTAEHLLNATMVKTFGCPRSRNAH-IERKKSKCDYILSSCPTAEQIQSIEETVNEAISQN 60

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV    M  E A      + L    +  +R+V +     G + +  C G HVS+T E+ 
Sbjct: 61  LPVTIEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GDYDACACIGLHVSNTSEMG 115

Query: 707 LLYIVS 712
              I+S
Sbjct: 116 TFKIIS 121


>gi|126667900|ref|ZP_01738865.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627560|gb|EAZ98192.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 641

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL   +  +        G  I  DG  +D  + +P T+ +L  IE  + ++  
Sbjct: 71  IRHSTAHLLAMTVKELFPEAQVTIGPVID-DGFYYDFKYDRPFTNEDLARIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+LPV   +M+R +A+   ++  +G +Y  R+       ED   +       LC G HV 
Sbjct: 130 QDLPVSRSVMSRSEAVELFSS--MGEEYKVRIIEDIPGAEDLSFYRQGDFIDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKM 192


>gi|262066380|ref|ZP_06025992.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379945|gb|EFE87463.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 375

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 115/269 (42%), Gaps = 37/269 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S    EV+   +PFY +  GGQLGD G  I +     I +V+   E I +    +E G 
Sbjct: 11  ISDMTYEVL--NSPFYVDGKGGQLGDRG-TIAEA---NIVEVK---ENIVILDKNLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                    +ID + +  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 61  -----EYTYSIDEKRQEDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   ++ +E+ VN+ I  ++ V   I   EDA         +  K    VR
Sbjct: 112 -----QKDISKETIEKLEELVNNDIKADILVEEEIYTNEDAHKIENLRKTIKEKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G V   A C G HV+ T EI +  I++  +I+    R   + G RA++    
Sbjct: 167 FIKI----GDVDICA-CAGFHVARTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           + + +K L +        ++  +++  +E
Sbjct: 222 KHDIIKKLTNTFSCKDDEILEMLDKALKE 250


>gi|325298491|ref|YP_004258408.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides salanitronis DSM
           18170]
 gi|324318044|gb|ADY35935.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides salanitronis DSM
           18170]
          Length = 152

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 19/155 (12%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPIT 628
           ++  N+ +    H+  H+++  +  + G      +H+ +  S       + D    +  +
Sbjct: 6   LNEHNKTEYPPMHTCEHIVNRTMVNLFGCGRAVSAHIERKKS-------KLDFALPQAPS 58

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++  IE  VN+ IA++LPV T  + +++A+       L    +D VR+V V     G 
Sbjct: 59  PEDIARIEAQVNETIARHLPVTTEFITQQEALGRFDLKRLPEGASDTVRIVKV-----GD 113

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   LC G HV++T EI    I+S S  + GI R+
Sbjct: 114 YDECLCIGLHVANTSEIGTFKIIS-SDYKDGIFRM 147


>gi|256026776|ref|ZP_05440610.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289764772|ref|ZP_06524150.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289716327|gb|EFD80339.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 375

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 117/273 (42%), Gaps = 37/273 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I D   +++       E + +    +E G 
Sbjct: 11  ISDKTYEIL--NSPFYIDGKGGQLGDRG-TISDANIIEV------KENLVILDKNLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                     ID + R  +S  H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 61  -----EYTYFIDEKRREDISQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   +  +E+ VN+ I +++ V   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEIIDKLEELVNNDIKKDIIVEEEIYTNEEAHKIENLRKAIKDKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T +I +  I++  +++    R   + G+RA++    
Sbjct: 167 FIKI----GDIDICA-CAGFHVSRTSQIEIFKIINYENVKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + + +K L +        ++  +++   E  K+
Sbjct: 222 KHDIIKKLTNIFSCKDDEILEMLDKSLAEKTKI 254


>gi|206895152|ref|YP_002247625.1| alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737769|gb|ACI16847.1| alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 346

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 118/273 (43%), Gaps = 40/273 (14%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y   GGQ  D     G G  ++  +  K+  G F     +   + +TE+ + + ID   R
Sbjct: 22  YEGGGGQPADRIKVKGPGFYIESDEAFKEKGGTFWKVRSISGEVPKTEVEVDVVIDELWR 81

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDN 638
            ++S  H+A H+   AL+  L    S+ G  I  D  + ++      P   A+L   E  
Sbjct: 82  LEVSQQHTAQHIF-SALAEQLYGWPSE-GFAIFDDESKIELLGADEDPEKYAQL---ERQ 136

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN++I + +PV   +    D           T Y +  R+V +E    G+   A CGGTH
Sbjct: 137 VNEVILRQIPVRVYVTEEVDEKLRKH-----TDY-EHPRIVEIE----GIDKCA-CGGTH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITG-----QRARSHLMGQDEKLKSLASFLKVSQ 753
           V++TG +    I+     R   R +  I        R   + + +++KLK+L        
Sbjct: 186 VTNTGYVGGFAILKVE--RKNTRYVRVIFAAGIRLARIAKNYIEREQKLKNL-------- 235

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             + G VEE     R  QL+  K++L+L  ++L
Sbjct: 236 --LTGDVEE-----RVFQLLEQKKQLELEKKNL 261


>gi|264679166|ref|YP_003279073.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209679|gb|ACY33777.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 687

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 119 IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLAAIEKKMTELAN 177

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV R++ R++A+       LG  Y   +       ED  ++       LC G HV 
Sbjct: 178 KDEQVVRRVLPRDEAVQYFKG--LGEAYKAEIIASIPSNEDVSLYREGAFEDLCRGPHVP 235

Query: 701 STGEI 705
           STG++
Sbjct: 236 STGKL 240


>gi|221199625|ref|ZP_03572669.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2M]
 gi|221205475|ref|ZP_03578490.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2]
 gi|221174313|gb|EEE06745.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2]
 gi|221180910|gb|EEE13313.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2M]
          Length = 243

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A +   E + EAV    + +  D+T FY   GGQ GD G   + DG  + I D +K K +
Sbjct: 11  AYLAHCEAIVEAVGDDGIRL--DRTVFYPLGGGQAGDAGTLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V TID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQDAHVAALAPGTRVVATIDWVRRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   S  I   +   +E  + +++    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATSDAI---DRDDVERRLAELVRGAHPVTTEWITDEEMAARP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ ++    GV     CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRID----GVDLQP-CGGTHVRNTSEIGALRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|228992319|ref|ZP_04152250.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus pseudomycoides DSM
           12442]
 gi|228767344|gb|EEM15976.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus pseudomycoides DSM
           12442]
          Length = 414

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 167/400 (41%), Gaps = 56/400 (14%)

Query: 499 GEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            +I+++A  S +K+ V   +T FY   GGQ  DTG         + + V  +     + H
Sbjct: 31  AQIIKQAYDSEEKLYVTLTETAFYPTGGGQPHDTGTL------NEASVVNVEEVEGEIRH 84

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSC 611
            I     L T+  +   I++Q R      H+A H+L      H  + TI G H+ +    
Sbjct: 85  FISSE--LHTK-EVTGKINWQRRFDHMQQHTAQHILSAAFWDHFDIPTI-GFHLGKETIT 140

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  D     +   +  TSA         N I+ +N P+  + MN E+A            
Sbjct: 141 IDLDTPELSI---ETATSAL-----QIANQIVFENHPIHIKWMNLEEA--KQLPLRKEPT 190

Query: 672 YNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
             + +RVV +E Y+  G      CGGTH   TGE+  ++I+     + GI R+  + G R
Sbjct: 191 ITENIRVVIIENYDYNG------CGGTHPKYTGEVGPIHIIGWERNKGGI-RLTLVAGWR 243

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW---EE--------YRKLQLIHAKRKL 779
               +    + +K ++  L  S+ ++  +V ++    EE          KL  + A + L
Sbjct: 244 VLKLMKRHQQIIKDVSKQLNSSENDIPNKVTQLLTSQEENEKALQTMNEKLLFVEANKLL 303

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           Q +++      I     +S + +    +E+  +   + ++ ++ I  LV  ++EK   VL
Sbjct: 304 QQSID------IHAGTLISKVFTHRSMQEITKLSAIITEQNENSITYLVTENEEKLQCVL 357

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               + +    N + L      + G GGG  +   A+ GG
Sbjct: 358 -ACGKAVTANMNTI-LKNALPTIEGKGGGNQKS--ARGGG 393


>gi|257139722|ref|ZP_05587984.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis E264]
          Length = 243

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 30/224 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAEGIF----VH-----HAIVERG 563
            D+T FY   GGQ GDTG   +  G  L + D +K K +G      VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDTGTLTLAGGAALVVADTRKAKFDGATPDDAVHVLAPGQAPLASG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   ++V  ID+  R +    H+A+HLL   L   +      +G  +T + +R D   
Sbjct: 90  V-KPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTAEYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRVV 679
            +PI   + + +E  + +++    PV T  I + E A        +  K      RVR++
Sbjct: 143 VEPI---DREQVETRLAELVGGAHPVTTEWITDDEMAARPELVRTMSVKPPMGLGRVRLL 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 200 RIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|317477275|ref|ZP_07936512.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906587|gb|EFV28304.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 102

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  ++K++E+ VN II Q+LPV T  + +E+A        L    ++ VRVV V     G
Sbjct: 6   TEEQIKNLENTVNQIIMQHLPVTTEFITQEEAKGRFDLKRLPEDASETVRVVKV-----G 60

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
            +   LC GTHV++T EI    I+S
Sbjct: 61  DYDECLCIGTHVANTSEIGTFKIIS 85


>gi|85858497|ref|YP_460699.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85721588|gb|ABC76531.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 645

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 15/140 (10%)

Query: 575 IDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           ID  +R  L I  HS +H++  A+  I    +   G  I  DG  +D  +    T  EL+
Sbjct: 69  IDIHSREGLEILRHSISHIMAQAVQDIFPGVLVSIGPAIE-DGFYYDFEYGNTFTPEELE 127

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----ND---RVRVVSVEYED 685
            IE  + +I+ ++ P V   ++RE+A+A       G  Y     ND    ++ VS+ Y  
Sbjct: 128 KIEARMQEIVKEDHPFVREEVSREEAVAFFQGK--GESYKVELLNDLPGNIKTVSL-YRQ 184

Query: 686 GGVHSSALCGGTHVSSTGEI 705
           G  H + LC G HV ST  I
Sbjct: 185 G--HYTDLCRGPHVPSTSMI 202


>gi|294649364|ref|ZP_06726795.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824734|gb|EFF83506.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 640

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           ++  +V+   L TE + V  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  INDRLVDACDLITEDATVQIITQKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  RED IA   A   G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPREDVIAEFTAR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E    G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|284165925|ref|YP_003404204.1| threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284015580|gb|ADB61531.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 285

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 26/236 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  + + FY  + GQ  D G  +GD     +TDV +  +G   H    E    R    ++
Sbjct: 27  VWLETSYFYGTSDGQPADRG-TVGDA---AVTDV-RLVDGEQAHVLAAEPS-FRAGHRVL 80

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            +ID+  R      H+A H+ + A    L S     G  I  + +  D+  + P+    L
Sbjct: 81  CSIDWSFRMYCMRAHTAAHICYGAARRCLESP-EYAGLEIGEETVAIDL-ETAPLDDEAL 138

Query: 633 KSIEDNVNDIIAQNLPV------VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
             +++ +N  + ++ PV      V  +  R+D +     +    +   RVRVV++  E+ 
Sbjct: 139 IELDELINRTVWESRPVSWESVPVATVRERDDVVFDEERSETAVE-KGRVRVVTIGDEND 197

Query: 687 GVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             H           + A CGGTHV +T E+  + ++  SS   G+RRIE   G +A
Sbjct: 198 TGHGMATADAREPWNVAACGGTHVRNTREVGPVTVLGCSSPAEGVRRIEFAVGPQA 253


>gi|251772034|gb|EES52606.1| threonyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 587

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +++ HSA H+L  A+  +  S     G   T +G  +D    +P +  +L+ IE+ +  I
Sbjct: 16  MALRHSAAHVLAQAVKRLFPSAQVGIGPA-TEEGFYYDFRFERPFSPEDLEKIEEEMRRI 74

Query: 643 IAQNLPVVTRIMNREDAI----ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           IA + P+V R ++RE A      +G    L   ++         Y+ G    + LC G H
Sbjct: 75  IATDAPIVRRPLSREAAHELFEKTGEPFKLEILHSIPAEAEITVYDQG--EFTDLCRGPH 132

Query: 699 VSSTGEIMLLYIVSES 714
           +  TG+I  + ++S S
Sbjct: 133 LPGTGQIGAVKLLSSS 148


>gi|221066194|ref|ZP_03542299.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711217|gb|EED66585.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 639

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLAAIEKKMTELAN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV R++ R++A+       LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEQVVRRVLPRDEAVQYFKG--LGEAYKAEIIASIPSNEDVSLYREGAFEDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|14520326|ref|NP_125801.1| fragment of alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|5457541|emb|CAB49032.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 213

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 43/219 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H + E    +    + 
Sbjct: 27  LLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEG-NVWHVVKEPEKFKVGDEVE 81

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFDVTHSKPITSAE 631
           L ID+  R +L   H+  HLL H L+ +LG    +  GS ++ +  R+D+ +        
Sbjct: 82  LKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGKWELVGSGMSVEKGRYDIAYP------- 134

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
                +N+N               +E  I+      L  KY D    V + +E    ++ 
Sbjct: 135 -----ENLNKY-------------KEQIIS------LFNKYVDEGGEVKIWWEGETRYTQ 170

Query: 692 AL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 171 IRDFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLE 209


>gi|148908305|gb|ABR17266.1| unknown [Picea sitchensis]
          Length = 258

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 29/247 (11%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFV 555
           +   +     G+++ V+ D T  Y + GGQ  D G    + + ++ ++ DV+ +  G+  
Sbjct: 24  RASFISMVADGERLAVIVDSTILYPQGGGQPADIGFIYDLDERLKFRVQDVRSR-NGVVF 82

Query: 556 HHA-----IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-LGSHVSQNG 609
           H+      + E+   +    ++L++D   R   S  HSA HLL   +  I L S  S  G
Sbjct: 83  HYGYFDSPLSEQSTFQKGQEVILSVDEHRRGLNSRLHSAGHLLDVCMHNIGLASLESGKG 142

Query: 610 SCITPDGLRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
               PDG   +     P    E K  ++E     +++    V   I+  E      AAAL
Sbjct: 143 HHF-PDGAFVEYKGKIPADDLERKREALEKEAKRLVSIGGKVSAAIVPYES-----AAAL 196

Query: 668 LGTKYNDRV------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            G +  + +      R+V +     G +    CGGTHV+   +I ++  VS+  +R G+ 
Sbjct: 197 CGGELPEYIPKDTTPRIVML-----GDNLGCPCGGTHVADISDIGIIK-VSQIRVRKGLT 250

Query: 722 RIEAITG 728
           ++    G
Sbjct: 251 KVSYTIG 257


>gi|321312429|ref|YP_004204716.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|291485328|dbj|BAI86403.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320018703|gb|ADV93689.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 643

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I        G  I  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMDEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
            NLP+V + ++RE+A A  A     L  +  D +     VS+ YE G      LC G HV
Sbjct: 133 ANLPIVRKEVSREEAKARFAEIGDDLKLELLDAIPEGETVSI-YEQGEFFD--LCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I    ++S
Sbjct: 190 PSTGKIKEFKLLS 202


>gi|237653686|ref|YP_002890000.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|237624933|gb|ACR01623.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 638

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D ++ +P T  +L++IE  + +I  
Sbjct: 71  IRHSTAHLLAHAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLQAIEQRMAEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           + +PV   +  R+ A+       +G  Y   +       ED  ++       LC G HV 
Sbjct: 130 REIPVHREVWPRDKAVDFFKG--IGEHYKAEIIASIPAGEDVSLYRQGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|253567091|ref|ZP_04844542.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|251944215|gb|EES84724.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
          Length = 154

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+++    H+A HLL+  +    G   S+N   I     + D       T  ++ +IE+
Sbjct: 10  HNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IEKKKSKCDYELPTCPTEEQIHAIEE 68

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I ++LPV    M  E+A +    + L    ++ +R+V +     G + +  C G 
Sbjct: 69  KVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASEILRIVRI-----GDYDACACIGQ 123

Query: 698 HVSSTGEIMLLYIVS 712
           HV +T EI L  I+S
Sbjct: 124 HVENTSEIGLFKIIS 138


>gi|229197730|ref|ZP_04324450.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1293]
 gi|228585807|gb|EEK43905.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1293]
          Length = 411

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 172/398 (43%), Gaps = 45/398 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G    + +  V++  E I   H I ++  L TE  + 
Sbjct: 43  VVLNETAFYPTGGGQPHDTGTLNG----ITVFGVEEVNEEI--RHFITKQ--LHTE-EVE 93

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 94  GKINWERRFDHMQQHAAQHILSASFWDHFNIPTI-GFHLGR--ETVTID-LETENLHTET 149

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A   +     N+I+ +N P+    M+ E+  A            + +RVV +E ++ 
Sbjct: 150 VEKAVQIA-----NNIVFENHPIRIEWMDLEE--AKTLPLRKEPNMTENIRVVMIENFDY 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  ++++     +  I R+  I G R    LMGQ ++ +K 
Sbjct: 203 NG------CGGTHPKRTGEVGPIHVLGWERNKGSI-RLTFIAGWRTLK-LMGQQQQIMKD 254

Query: 745 LASFLKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSH 799
           ++  L  S+ ++  +V ++    +E  K      ++ L     +L     KI     +S 
Sbjct: 255 VSKQLNSSEADIPVKVAQLLTSQKETEKAMQTMNEKLLYAEANELLQQPTKIHAGILISK 314

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           + +    +E+  +   + ++ +  I   V I  E K   ++   + +    NA+    L 
Sbjct: 315 VFTNRSMQEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNALLKDALP 373

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A     G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 AI---EGKGGGNKKSARGGGKAIMTGDEFLNQLVSSLQ 408


>gi|294785828|ref|ZP_06751116.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294487542|gb|EFG34904.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 375

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 116/273 (42%), Gaps = 37/273 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I D   +++       E + +    +E G 
Sbjct: 11  ISDRTYEIL--NSPFYTDGKGGQLGDRG-TISDANIIEV------KENLVILDKDLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                     ID + R  +   H+A H+       +  L+T+ G  +++  + I  D   
Sbjct: 61  -----EYTYFIDEKRREDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTIDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   ++ +E+ VN+ I  ++ V   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEIIEKLEELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T +I +  I++  +I+    R   + G+RA++    
Sbjct: 167 FIKI----GDIDICA-CAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + + +K L +        ++  +++   E  K+
Sbjct: 222 KHDIIKKLTNIFSCKDDEILEMLDKSLTEKTKI 254


>gi|313233353|emb|CBY24467.1| unnamed protein product [Oikopleura dioica]
          Length = 544

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 114/267 (42%), Gaps = 33/267 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           +++  +T F+ E GGQ GD G    GD        V++    + +    V  G   TE+S
Sbjct: 38  KILLTETIFFPEGGGQPGDNGKITWGDDSSSVFYTVREGENAVHLCDKQVPEG---TEVS 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALST--ILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             L +D+ +R      HS  HL+           S +S N      D   F +  S+P+T
Sbjct: 95  --LEVDWDSRFDNMSQHSGQHLISAIFEQPEFNASTISWN----LGDDKSF-IELSRPVT 147

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E++ +E+  N+ I +   V   ++  ++ +  G    L   +   +RVV+++  D   
Sbjct: 148 DEEVQRVENMCNEAIRKRTRVSVELLTSKEDLRKGCKD-LPKDFAGPIRVVNIDGID--- 203

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               +C GTHV S  ++  + ++ +   + G   +  + GQR           LK+LA  
Sbjct: 204 --QNMCCGTHVESLSDLQAIKLLHQEK-KKGKGIVWFVCGQRV----------LKTLADS 250

Query: 749 LKVSQ---GNVVGRVEEIWEEYRKLQL 772
             VS+     +  + EEI E    LQ+
Sbjct: 251 WNVSREACKKMSCKEEEIPERIENLQV 277


>gi|325569916|ref|ZP_08145910.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325157039|gb|EGC69207.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 646

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 11/146 (7%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   L + HS  HL+  A+  +  S     G  I   G  +D  + + P+T+ 
Sbjct: 60  IVTPDHEDALGL-LRHSTAHLMAQAMRRLYPSIHFGVGPAID-SGFYYDTDNGENPVTAE 117

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDG 686
           +L +IE  +  II +NLP+  R++ +E+A+A  A       L T+  D   + +  Y+ G
Sbjct: 118 DLPAIEAEMMKIIKENLPIERRVLTKEEALALFAEDPYKVELITELPDDETITA--YQQG 175

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I +  ++S
Sbjct: 176 EF--VDLCRGPHVPSTGRIQVYKLLS 199


>gi|296332117|ref|ZP_06874581.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675488|ref|YP_003867160.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150888|gb|EFG91773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413732|gb|ADM38851.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 643

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I        G  I  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMEEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
            NLP+V + ++RE+A A  A     L  +  D +     VS+ YE G      LC G HV
Sbjct: 133 ANLPIVRKEVSREEAKARFAEIGDDLKLELLDAIPEGETVSI-YEQGEFFD--LCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I    ++S
Sbjct: 190 PSTGKIKEFKLLS 202


>gi|226954309|ref|ZP_03824773.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834935|gb|EEH67318.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 640

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           ++  +V+   L TE + V  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  INDRLVDACDLITEDATVQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  RED IA   A   G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPREDVIAEFTAR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E    G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|262369846|ref|ZP_06063173.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262314885|gb|EEY95925.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 640

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 17/225 (7%)

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D   +IG G  L    V  K +G  V  +     ++ T+ SL +           I HS 
Sbjct: 22  DVALSIGPG--LAKNTVAGKVDGRLVDAS----DLITTDASLQIITPKDEEGVEIIRHSC 75

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            HL+ HA+  +        G  I  DG  +D+  +KP T  ++ +IE+ +  +I Q+  V
Sbjct: 76  AHLVGHAVKQLFPEAKMVIGPVIE-DGFYYDIFSAKPFTPEDMLAIEERMKKLIDQDYDV 134

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEI 705
           + ++  R++ IA   A   G  Y  R+     E  + G++       +C G HV +T   
Sbjct: 135 IKKMTPRDEVIAEFTAR--GEDYKLRLIADMPEETEMGLYYHQDYLDMCRGPHVPNTK-- 190

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             L     + +     R +A   Q  R +     +K K LA+++K
Sbjct: 191 -FLKAFKLTKMSGAYWRGDAKNEQLQRIYGTAWADK-KQLAAYIK 233


>gi|218898715|ref|YP_002447126.1| alanyl-tRNA synthetase family protein [Bacillus cereus G9842]
 gi|218543242|gb|ACK95636.1| alanyl-tRNA synthetase family protein [Bacillus cereus G9842]
          Length = 400

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 177/401 (44%), Gaps = 51/401 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG  + D   + + ++  +     + H IVE+  L TE  + 
Sbjct: 32  VVLNETAFYPTGGGQPHDTGT-LNDIDVINVEEIHGE-----IRHFIVEK--LHTE-EVE 82

Query: 573 LTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             I+++ R      H+A H+L      H  + TI G H+ +    +T D L  +  H++ 
Sbjct: 83  GKINWERRFDHMQQHAAQHILSAAFWDHFNIPTI-GFHLGK--ETVTID-LEIENLHTET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YED 685
           +  A      +  N I+ +N  +    MN E A              + +RVV +E ++ 
Sbjct: 139 VEKAI-----NIANKIVFENHQIHIEWMNLEKA--KTFPLRKEPTITENIRVVIIENFDY 191

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKS 744
            G      CGGTH   TGE+  + ++     + GI R+  I G R    LMGQ ++ +K 
Sbjct: 192 NG------CGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLK-LMGQQQQIMKD 243

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNF 796
           ++  L  S  ++  +V ++     E  + +Q ++ K       +L ++ +  H  AD+  
Sbjct: 244 VSKQLNSSGSDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIH--ADI-L 300

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +S + +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L 
Sbjct: 301 ISKVFTNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LL 357

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + +   + G GGG +   A+ GG      D+ +  + S L+
Sbjct: 358 KDALPTIEGKGGGNKKS-ARGGGRAIMSGDEFLNQLVSSLQ 397


>gi|323475009|gb|ADX85615.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus REY15A]
 gi|323477739|gb|ADX82977.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus HVE10/4]
          Length = 236

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GG   DTG  I + G ++ +T+  K+ E   + H I +   L     +
Sbjct: 27  VMLDKTAFYPGGGGLENDTGFLINERGEKINVTEA-KRGENGEILHKIDQNASLNVGDKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  + D       T  E
Sbjct: 86  IGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQAKDDFNVENKDTLIE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L    +  N+I+ + + +    + RE+A+   A   L  +   ++ +  +  E  G+   
Sbjct: 144 LI---NEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPIWRI-VEIPGIDIQ 199

Query: 692 ALCGGTHVSST---GEIMLLYIVSESSIR 717
           A  GG HV++T   GEI+LL + ++   R
Sbjct: 200 A-DGGPHVNNTKEIGEIVLLKVENKGKGR 227


>gi|270158051|ref|ZP_06186708.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|269990076|gb|EEZ96330.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
          Length = 639

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           ++  + +LV+  + Q      I HS  HLL  A+ +I  S     G  +  DG  +D   
Sbjct: 50  LIENDSALVILTEKQEESLEIIRHSTAHLLAQAVKSIFPSAQVTIGPVVE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV------- 676
            +  T  +L+ IE  + ++   N PV  R + R++AI    +  +G +Y  ++       
Sbjct: 109 QRAFTPDDLELIEAKMAELAKANYPVTRRELPRDEAIQYFKS--IGEEYKAKIIADIPKD 166

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTG 703
            V+S+ Y+ G      LC G HV +TG
Sbjct: 167 EVLSL-YKQGDFED--LCRGPHVPATG 190


>gi|221320079|ref|ZP_03601373.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
          Length = 643

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL   +  I        G  I  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSAAHLLAQTIKRIYKDVKFGVGPVIE-NGFYYDVEMDEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
            NLP+V + ++RE+A A  A     L  +  D +     VS+ YE G      LC G HV
Sbjct: 133 ANLPIVRKEVSREEAKARFAEIGDDLKLELLDAIPEGETVSI-YEQGEFFD--LCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I    ++S
Sbjct: 190 PSTGKIKEFKLLS 202


>gi|73965625|ref|XP_537630.2| PREDICTED: similar to CG10802-PA [Canis familiaris]
          Length = 543

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 129/310 (41%), Gaps = 39/310 (12%)

Query: 473 RKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYA 522
           +KV  ++PP     +D T  V S   A     E+  E  +G+K      +VV + T  + 
Sbjct: 129 KKVSTKRPPPGMDDLDFTTTVVSCRPA-----ELETEGSNGKKEVLSGFQVVLEDTLLFP 183

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G   G  + L++T  ++ A+        +  G   TE+ +   +D++ R  
Sbjct: 184 EGGGQPDDHGTINGISV-LRVT--RRGAQADHFTQTPLAPG---TEVQV--RVDWERRFD 235

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HS  HL+      + G   +          +  D   S  +T  ++ +IE +VN+ 
Sbjct: 236 HMQQHSGQHLITAVADHLFGLKTTSWELGRLRSVIELD---SPSVTIEQVAAIEQSVNEK 292

Query: 643 IAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   LPV  R ++ +D  +       L   +   +RVV++E  D       +C GTHVS+
Sbjct: 293 IRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIENVDAN-----MCCGTHVSN 347

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             ++ ++ I+     +     +  + G R    +       K+L + LK         VE
Sbjct: 348 LSDLQVIKILGIEKGKKNKTNLAFLAGNRVLKWMERSHGTEKALTALLKCG-------VE 400

Query: 762 EIWEEYRKLQ 771
           +  E  +KLQ
Sbjct: 401 DHVEAVKKLQ 410


>gi|311069390|ref|YP_003974313.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869907|gb|ADP33382.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 643

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I        G  I  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMEEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
            NLP+V + ++RE+A A  A     L  +  D +     VS+ YE G      LC G HV
Sbjct: 133 ANLPIVRKEVSREEAKARFAEIGDDLKLELLDAIPEGETVSI-YEQGEFFD--LCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I    ++S
Sbjct: 190 PSTGKIKEFKLLS 202


>gi|289163681|ref|YP_003453819.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
 gi|288856854|emb|CBJ10665.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
          Length = 639

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           ++  + +LV+  + Q      I HS  HLL  A+ +I  S     G  +  DG  +D   
Sbjct: 50  LIENDSALVILTEKQEESLEIIRHSTAHLLAQAVKSIFPSAQVTIGPVVE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV------- 676
            +  T  +L+ IE  + ++   N PV  R + R++AI    +  +G +Y  ++       
Sbjct: 109 QRAFTPDDLELIEAKMAELAKANYPVTRRELPRDEAIQYFKS--IGEEYKAKIIADIPKD 166

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTG 703
            V+S+ Y+ G      LC G HV +TG
Sbjct: 167 EVLSL-YKQGDFED--LCRGPHVPATG 190


>gi|309782526|ref|ZP_07677250.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918863|gb|EFP64536.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 580

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVIE-NGFYYDFAYKRPFTPDDLVAIEKKMGELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   +++R+DA+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVLSRDDAVKLFQG--MGEKYKAEIIASIPEDQEIGLYREGNFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|46126749|ref|XP_387928.1| hypothetical protein FG07752.1 [Gibberella zeae PH-1]
          Length = 245

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 10/194 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V+ D T FYA+ GGQ  DTG      +     +T VQK   G  VH           +  
Sbjct: 35  VITDSTIFYAKGGGQPSDTGTMSFPDEASTFTVTSVQKLPSGTIVHLGTYSGSPFEEQKM 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++  ID   R+  S  H A H+L  A+  +    + +  +   P G  F V     I S 
Sbjct: 95  VIQKIDKDTRKLHSQIHDAGHILSSAIRRLGIPELREIKAQHYP-GTAF-VDFHGIIQSD 152

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             + +E   N+I+  +  +  R  +R++    S          +D VR V +E E     
Sbjct: 153 RKEDLERMANEIVQGDRSIDVRWWSRDELKEKSWTMPEDDGSRDDLVRAVEIEGE----- 207

Query: 690 SSALCGGTHVSSTG 703
            + +CGGTH+ ST 
Sbjct: 208 GAYMCGGTHMRSTA 221


>gi|171463692|ref|YP_001797805.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689063|sp|B1XV14|SYT_POLNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171193230|gb|ACB44191.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 640

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 15/194 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EA  ++ D   +IG G+        K A G  V   +V+   +  + S +  I  ++   
Sbjct: 15  EAPVRVADVAQSIGSGL-------AKAALGGIVDGKMVDTSFVIDKDSQLAIITDKSPEA 67

Query: 583 LSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           L I  HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L ++E  + +
Sbjct: 68  LEIVRHSTAHLLAYAVKELFPEAQVTIGPVIE-NGFYYDFSYHRPFTPDDLVALEKKMTE 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGT 697
           +  ++ PV   +M R++A+        G  Y   +     + ED  +++      LC G 
Sbjct: 127 LAKRDEPVTRTVMPRDEAVEFFKKQ--GENYKAELIASIPQGEDVSLYAEGKFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|325968851|ref|YP_004245043.1| threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta moutnovskia
           768-28]
 gi|323708054|gb|ADY01541.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta moutnovskia
           768-28]
          Length = 240

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  DQT F+  +GG   DTG  I  G    I +V K++E     H +      R   S+ 
Sbjct: 28  VWLDQTLFHPRSGGVANDTGKLIWQGEEYVIKEVIKESEDAV--HILDREPRFRVGDSVH 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR--FDVTHSKPITSA 630
             ID+  R +L   H+ATH++         + V+  G  ITP+  R  +++T S      
Sbjct: 86  GIIDWDRRYRLMRLHTATHIIAALAYKDYNALVT--GGDITPEYARDDYNLTLSGDALRK 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGG 687
             + +    N+++ + +PV    + +E+A+       L  +     +  R+V +E    G
Sbjct: 144 AFQDLIAEANEVVKRGIPVKIYFLKKEEALKIPGIVKLAEREPPPGEEWRIVEIE----G 199

Query: 688 VHSSALCGGTHVSSTGEI-MLLYIVSES 714
           +   A  GG HV++T EI  ++++ SES
Sbjct: 200 IDIQA-DGGPHVANTREIGEIVFLKSES 226


>gi|303229391|ref|ZP_07316181.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515927|gb|EFL57879.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 636

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 72  TLRHTASHVMAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHTLTPEDLTKIEKEMSRIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M+R++AI         +K  D +V ++    ED  +   A      LC G
Sbjct: 131 KENLPITKSVMSRQEAI-----EFFKSKNEDYKVELIEDLPEDAVISCYAQGDFVDLCAG 185

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 186 PHVASTGKV 194


>gi|206560731|ref|YP_002231496.1| putative alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|198036773|emb|CAR52673.1| putative alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 243

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A + Q E + +AV    + +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAVGDDGIRL--DRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPDQEASVATLAPGTRVVAAIDWLRRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   S  I   +   +E  +   +    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATSDAI---DRDDVERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|13542113|ref|NP_111801.1| threonyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|22654129|sp|Q978W0|SYT_THEVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14325544|dbj|BAB60447.1| tRNA synthetase Thr [Thermoplasma volcanium GSS1]
          Length = 660

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL +A++ +    +   G  +  +G  +D    KPIT  +L  IE+ +  I+ 
Sbjct: 59  LRHSAAHLLANAVTNLFPEALPNTGPVVE-NGFYYDFD-MKPITEEDLSKIEEEMKRIVK 116

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+   I ++++ +   +      +  N+ V   S  Y+ G      LC G HV STG
Sbjct: 117 ENVPIRRMIYSKDELLKIFSKNPYKIRIINENVEGKSSVYQQGNF--VDLCLGPHVPSTG 174

Query: 704 EIMLLYIVSESS 715
            I    ++S +S
Sbjct: 175 YIKAFKLLSIAS 186


>gi|323345550|ref|ZP_08085773.1| alpha-amylase [Prevotella oralis ATCC 33269]
 gi|323093664|gb|EFZ36242.1| alpha-amylase [Prevotella oralis ATCC 33269]
          Length = 718

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+      H+A HLL+  +  + G   S N            +   KP    E K+IED
Sbjct: 572 HNKEDFPPAHTAEHLLNQTMVRMFGCERSNNAHIERKKSKITYILDHKP-DRKEEKAIED 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N++I ++LPV   +++R+          L    +D +R+V +     G +   LC G 
Sbjct: 631 KMNELIQEDLPVTYEVVDRDHLPTDVKTDRLPADASDMLRLVRI-----GDYDVCLCIGK 685

Query: 698 HVSSTGEI 705
           HV ST +I
Sbjct: 686 HVRSTSQI 693


>gi|303230749|ref|ZP_07317496.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514509|gb|EFL56504.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 636

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 72  TLRHTASHVMAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHTLTPEDLTKIEKEMSRIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M+R++AI         +K  D +V ++    ED  +   A      LC G
Sbjct: 131 KENLPITKSVMSRQEAI-----EFFKSKNEDYKVELIEDLPEDAVISCYAQGDFVDLCAG 185

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 186 PHVASTGKV 194


>gi|237745470|ref|ZP_04575950.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229376821|gb|EEO26912.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 650

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 86  LRHSTAHLLAYAVKQLFPEAQVTIGPVIE-NGFYYDFSYKRPFTPEDLQAIEKKMTELAR 144

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N  V  +++ R++A+A   +  +G  Y   +     + ED  +++S     LC G HV 
Sbjct: 145 KNETVTRKVLPRDEAVAYFKS--IGEDYKAEIIESIPQNEDVSLYTSGGFTDLCRGPHVP 202

Query: 701 STGEIMLLYIV 711
           + G++ +  ++
Sbjct: 203 ANGKLKVFKLM 213


>gi|156406576|ref|XP_001641121.1| predicted protein [Nematostella vectensis]
 gi|156228258|gb|EDO49058.1| predicted protein [Nematostella vectensis]
          Length = 386

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 44/272 (16%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV + T  + E GGQ  D G   G  + LQ+    ++A  +   H  ++ G    + SL
Sbjct: 34  EVVLEDTILFPEGGGQPDDKGMINGIEV-LQVFRRGRQAVHVLSQH--IDEG---AQASL 87

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILG------------SHVSQNGSCITPDGLRF 619
           VL  D++ R      HS  HLL   +    G            SH+  +  C+TPD    
Sbjct: 88  VL--DWERRFDHMQQHSGQHLLSALIENKFGYKTTSWELGRVRSHIELHCKCLTPD---- 141

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM--NREDAIASGAAALLGTKYNDRVR 677
                      E+  IE + N  I  ++PV   +     +  +       L   +   +R
Sbjct: 142 -----------EIACIESSANAAIRGHVPVCVHVYPDKTDPELEEAQTRGLPDDHIGPIR 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE-SSIRAGIRRIEAITGQRARSHLM 736
           V+ ++  D       +C GTHV +  ++  + +  +  S+R G  R+  + G R   HL 
Sbjct: 191 VIEIKGIDKN-----MCCGTHVDNLSQVQAVKLFPDVDSMRGGC-RLFFLCGDRVFKHLG 244

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
              E  ++L+  L          VE I    R
Sbjct: 245 RAMENDRALSKCLSCGPDEHTTAVERIQTSLR 276


>gi|328543630|ref|YP_004303739.1| Alanyl-transfer RNA synthetase domain protein [Polymorphum gilvum
           SL003B-26A1]
 gi|326413374|gb|ADZ70437.1| Alanyl-transfer RNA synthetase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 238

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 90/205 (43%), Gaps = 20/205 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTEMS 570
           +V D+T FYA  GGQ GD+G     DG R+ I T V        VH       +     +
Sbjct: 28  IVLDRTVFYASGGGQPGDSGYLEREDGSRIAITTTVYDNDRTTIVHVPADGEAMPAPGET 87

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKPITS 629
           +V  +D+  R +L   H+A HL    LS +L   V+  G    P+G L FD+    P   
Sbjct: 88  VVAHLDWARRYRLMRMHTALHL----LSVVLPYPVT-GGQIGDPEGRLDFDI----PEAD 138

Query: 630 AELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKY---NDRVRVVSVEYED 685
            +  ++   +N + A +  V T  I + E     G    +  K    + RVR+V +    
Sbjct: 139 FDRDALTARLNALAAGDHAVTTEWITDAELDANPGLVKTMSVKPPRGSGRVRLVRI---- 194

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYI 710
           G       CGGTHVS T EI  L I
Sbjct: 195 GTDVDLQPCGGTHVSRTSEIGPLSI 219


>gi|313892956|ref|ZP_07826533.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442309|gb|EFR60724.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 636

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 72  TLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHTLTPEDLGKIEKEMSRIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M+R++AI         +K  D +V ++    ED  +   +      LC G
Sbjct: 131 KENLPITKSVMSRQEAI-----EFFKSKNEDYKVELIQDLPEDAVISCYSQGDFIDLCAG 185

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 186 PHVASTGKV 194


>gi|294340009|emb|CAZ88373.1| threonine tRNA synthetase [Thiomonas sp. 3As]
          Length = 639

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLEKIEARMAELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ PV  +++ R++A+    +  LG  Y   +       ED  ++S      LC G HV 
Sbjct: 130 KDEPVRRKVLPRDEAVDYFKS--LGEHYKAEIIASIPAGEDVSLYSEGAFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG + +  ++
Sbjct: 188 STGRLKVFKLM 198


>gi|78067074|ref|YP_369843.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Burkholderia sp. 383]
 gi|77967819|gb|ABB09199.1| Ala-tRNA(Pro) hydrolase [Burkholderia sp. 383]
          Length = 243

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 91/225 (40%), Gaps = 28/225 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAEGIFVHHAI--------VER 562
           +  D+T FY   GGQ GDTG   + DG  + I D +K K +G     A+           
Sbjct: 28  IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFDGATPDDAVHVPAPGQEASV 87

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     +V  ID+  R +    H+A HL+   L   +      +G  +T D +R D  
Sbjct: 88  AALVAGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLPYAV------DGCSVTADYVRLDFA 141

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRV 678
            S  I   +   +E  +  ++    PV T  I + E A        +  K      RVR+
Sbjct: 142 TSDAI---DRDDVERRLAGLVVGAHPVTTEWITDDEMAARPDLVRTMSVKPPMGLGRVRL 198

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 199 LRIEQVD-----LQPCGGTHVRNTSEIGALRVAKLEKKSARTRRL 238


>gi|56475898|ref|YP_157487.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|73919766|sp|Q5P7X5|SYT_AZOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56311941|emb|CAI06586.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 638

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAHAVKELFPEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLEKIEKRMAELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           + +PV   +  R+ A+    +   G  Y   +     + ED  ++       LC G HV 
Sbjct: 130 REIPVSREVWPRDKAVEFFKSQ--GEHYKAEIIASIPQAEDVSLYRQGDFIDLCRGPHVP 187

Query: 701 STGEIMLL 708
           STG++ + 
Sbjct: 188 STGKLKVF 195


>gi|237747667|ref|ZP_04578147.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229379029|gb|EEO29120.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 635

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 71  LRHSTAHLLAYAVKQLFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLQAIEKKMTELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N  V  +++ R++A+A   +  +G  Y   +     + ED  +++S     LC G HV 
Sbjct: 130 KNEEVTRKVLPRDEAVAYFKS--IGEDYKAEIIESIPQNEDVSLYTSGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           + G++ +  ++
Sbjct: 188 ANGKLKVFKLM 198


>gi|224540053|ref|ZP_03680592.1| hypothetical protein BACCELL_04966 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518331|gb|EEF87436.1| hypothetical protein BACCELL_04966 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 155

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S +   I     + D       T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTCEHIVNRTMMNLFGCGRSVSAH-IERKKSKLDYALETAPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++K +E+ VN +IAQ L V T  + +E+A        L    ++ VR+V V     G 
Sbjct: 60  EEDVKRLEEAVNAVIAQGLDVTTEFITQEEAQGRFDLKRLPEDASETVRIVKV-----GN 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           +   LC GTHV +T E+    ++S
Sbjct: 115 YDECLCLGTHVKNTSEVGTFKVIS 138


>gi|58039289|ref|YP_191253.1| threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|73919795|sp|Q5FSP9|SYT_GLUOX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58001703|gb|AAW60597.1| Threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 645

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 11/147 (7%)

Query: 567 TEMSLVLTIDYQNRRQLS----INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           TE+S   ++ +  R+       I H A H+L  A+ ++        G  I  DG  +D +
Sbjct: 49  TEISSDASVKFITRKDEDALEMIRHDAAHVLAEAVQSLWPETQVTIGPSIK-DGFYYDFS 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             KP T  +  +IE  + +I+A N P V  + +R+DAI        G  +  ++     E
Sbjct: 108 REKPFTPEDFPAIEAKMREIVAANTPFVREVWDRDDAIRFFEEK--GEDFKAQLIQDLPE 165

Query: 683 YEDGGVHSSA----LCGGTHVSSTGEI 705
            E   ++       LC G H+ +TG++
Sbjct: 166 DEQISIYRQGEWLDLCRGPHLRTTGDV 192


>gi|86357812|ref|YP_469704.1| threonyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|123765783|sp|Q2K859|SYT_RHIEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|86281914|gb|ABC90977.1| threonyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 668

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPDDLPKIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P   +I +RE A    AA   G +Y   +     E +D  ++       LC G H++
Sbjct: 132 RNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGEWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG++
Sbjct: 190 STGQV 194


>gi|22299745|ref|NP_682992.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|73919834|sp|Q8DGW0|SYT_THEEB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22295929|dbj|BAC09754.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 605

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           ++ R   I H+ +H+L  A+  +        G  I  +G  +D  H +P +  +L+ IE 
Sbjct: 16  ESERLKRIRHTTSHILAMAVQKLFPKAQVTIGPWIE-NGFYYDFDHPEPFSEKDLRLIEK 74

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSA 692
            +  II + LPV+   + RE+A     A  LG  Y      D    +++ +   G     
Sbjct: 75  EMVKIIKRKLPVIREEVTREEAERRIRA--LGEPYKLEILQDLEEPITIYH--LGDEWWD 130

Query: 693 LCGGTHVSSTGEIMLLYIVSES 714
           LC G HV +TGEI    I  ES
Sbjct: 131 LCAGPHVENTGEIDPKAIALES 152


>gi|94264275|ref|ZP_01288069.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|94270245|ref|ZP_01291687.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93450880|gb|EAT01895.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93455320|gb|EAT05527.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
          Length = 641

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  + G  V       T DG  +D    +P T  +L+ IE  + +I+A
Sbjct: 73  LRHSAAHVMAEAVLDLFGPEVQVTIGPATADGFYYDFDRRQPFTPDDLEKIEARMAEIVA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            + P   R M+   AI    A   G +Y   + +  +E E   ++S      LC G H+ 
Sbjct: 133 ADQPFERREMSLAQAIDFFTAQ--GQEYKVEL-LRELEAEQVSLYSQGNFVDLCRGPHLP 189

Query: 701 STG 703
           STG
Sbjct: 190 STG 192


>gi|161621305|ref|YP_583315.2| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 635

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMTELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + NR++A+A   +  +G KY   +       ++ G++       LC G HV 
Sbjct: 130 KDEKVSREVWNRDEAVALFES--MGEKYKAEIIASIPADQEIGLYREGSFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|93353957|gb|ABF08046.1| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 663

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 99  IRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMTELAR 157

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + NR++A+A   +  +G KY   +       ++ G++       LC G HV 
Sbjct: 158 KDEKVSREVWNRDEAVALFES--MGEKYKAEIIASIPADQEIGLYREGSFVDLCRGPHVP 215

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 216 STGKLKVFKLM 226


>gi|229061186|ref|ZP_04198536.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH603]
 gi|228718057|gb|EEL69697.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH603]
          Length = 411

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 30/256 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV ++T FY   GGQ  DTG   G  + + + ++  +     + H I E+  L TE  + 
Sbjct: 43  VVLNETTFYPTGGGQPHDTGTLNGIPV-INVEEIDGE-----IRHFIAEQ--LHTE-EVD 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+Q R     +H   H   H LS     H   N   I     +  VT     T+  +
Sbjct: 94  GKIDWQRR----FDHMQQHTAQHILSASFWDHF--NIPTIGFHLGKETVTIDLETTNLSI 147

Query: 633 KSIEDNV---NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGV 688
           +++E  V   N I+ +N P+    MN ++  A            + +RVV +E ++  G 
Sbjct: 148 ETVEKAVQIANQIVFENHPIRIEWMNLDE--AKKLPLRKEPTMTENIRVVIIENFDYNG- 204

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-LKSLAS 747
                CGGTH   TGE+  + ++     +  I R+  I G R+   LMGQ ++ L  ++ 
Sbjct: 205 -----CGGTHPKHTGEVGPIQVLGWERNKGRI-RLTFIAGWRSLK-LMGQHQQILTDVSK 257

Query: 748 FLKVSQGNVVGRVEEI 763
            L  S+ ++  +V ++
Sbjct: 258 QLNSSETDIPAKVAQL 273


>gi|82701621|ref|YP_411187.1| threonyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123727233|sp|Q2YBS6|SYT_NITMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82409686|gb|ABB73795.1| Ser-tRNA(Thr) hydrolase [Nitrosospira multiformis ATCC 25196]
          Length = 638

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HLL HA+  +        G  I  DG  +D ++ +P T  +L +IE  + +I  
Sbjct: 71  IRHSSAHLLAHAVKELFPEAQVTIGPVIE-DGFYYDFSYKRPFTPEDLAAIEKRMAEIST 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +NL V  ++ +R +AI        G  Y  ++       ED  ++S      LC G HV 
Sbjct: 130 RNLKVERQVWDRSEAINFFKNQ--GEHYKAQIIEAIPGDEDVSLYSQGNFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           +T  + +  ++
Sbjct: 188 ATSRLKVFKLM 198


>gi|217967413|ref|YP_002352919.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336512|gb|ACK42305.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 638

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 16/154 (10%)

Query: 570 SLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           SLV  +D++N    +I  H++ H+L HA+  +        G  I  DG  +D    +P +
Sbjct: 51  SLVELLDWENEEGRNIYRHTSAHILAHAVKELFPEVKLGIGPAIE-DGFYYDFYRKEPFS 109

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-------- 680
             +L+ IE+ + +II +NLP+    + RE+AI      L   K + ++ ++         
Sbjct: 110 QEDLEKIENKMKEIINRNLPIERIEVTREEAI----KILRDLKEDFKLELLEEIPEGEKI 165

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             Y+ G      LC G H+ ST  +    ++S S
Sbjct: 166 SFYKQGSFMD--LCRGPHLPSTSWVKAFKLLSVS 197


>gi|187929057|ref|YP_001899544.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|238691850|sp|B2UGJ8|SYT_RALPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187725947|gb|ACD27112.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 635

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVIE-NGFYYDFAYKRPFTPDDLVAIEKKMGELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   +++R+DA+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVLSRDDAVKLFQG--MGEKYKAEIIASIPEDQEIGLYREGNFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|327188321|gb|EGE55539.1| threonyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 668

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPDDLPKIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P   +I +RE A    AA   G +Y   +     E +D  ++       LC G H++
Sbjct: 132 RNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG++
Sbjct: 190 STGQV 194


>gi|256390992|ref|YP_003112556.1| threonyl/alanyl tRNA synthetase SAD [Catenulispora acidiphila DSM
           44928]
 gi|256357218|gb|ACU70715.1| Threonyl/alanyl tRNA synthetase SAD [Catenulispora acidiphila DSM
           44928]
          Length = 244

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 20/218 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D++ FY   GGQ  D G  +  G+R +I  V+K  + + + H   E  +     ++ 
Sbjct: 34  IVLDRSAFYPGGGGQPPDEGVLVWGGVRTRIVGVRKGDDLVLIPHD--EDPLPPAGTAVR 91

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D + R  L   HS  HLL   +     + V+  G  + P   R D   + P   A+ 
Sbjct: 92  GALDDERRTWLMRTHSGLHLLSGVVFRDFNALVT--GGNMEPGTARMDF--NLPEVPADF 147

Query: 633 KS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYED 685
           K+ IE+  N  + ++  +  +++ RE+A A     ++ T  N      + VR+V +    
Sbjct: 148 KARIEEACNVEVVKDHRIDVKVLPREEAFA--IPDIIRTATNLVPPELEEVRIVDIV--- 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            G+ + A  GGTHV ST  I  + ++   +   G RR+
Sbjct: 203 -GLDTQA-DGGTHVESTRWIGKIEVLKVENKGKGFRRL 238


>gi|190891876|ref|YP_001978418.1| threonyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|238692487|sp|B3PNV4|SYT_RHIE6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190697155|gb|ACE91240.1| threonyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 668

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPDDLPKIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P   +I +RE A    AA   G +Y   +     E +D  ++       LC G H++
Sbjct: 132 RNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG++
Sbjct: 190 STGQV 194


>gi|120554978|ref|YP_959329.1| threonyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|166223352|sp|A1U2C3|SYT_MARAV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120324827|gb|ABM19142.1| Ser-tRNA(Thr) hydrolase [Marinobacter aquaeolei VT8]
          Length = 641

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D  + +P T+ ++  IE  + ++  
Sbjct: 71  IRHSTAHLMAMAVQELFPGAQVTIGPVIE-NGFYYDFKYERPFTNEDMARIEKRMEELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+LPV   IM+R++AI       +G +Y  R+       ED   +       LC G HV 
Sbjct: 130 QDLPVSRSIMSRDEAIK--LFNEMGEEYKVRIIEDIPGEEDLSFYRQGDFIDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|320451353|ref|YP_004203449.1| alanyl-tRNA synthetase-like protein [Thermus scotoductus SA-01]
 gi|320151523|gb|ADW22901.1| alanyl-tRNA synthetase related protein [Thermus scotoductus SA-01]
          Length = 375

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 16/226 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV--QKKAEGIFV 555
           Q  +V      Q   VV  QT FY E+GGQ  DTG   G+  ++++  V  + KA G  V
Sbjct: 14  QARVVRAWSDEQGHHVVLSQTLFYPESGGQPADTGVLKGEFGQVRVLYVFEEAKAFGDVV 73

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H      G +     +   ID+  R +    H+A H+L  AL    G H       ++ D
Sbjct: 74  HRV---DGPIPEGAEVEGEIDWNRRFRHMQRHTAQHILSQALLRAGGYHT----IAVSLD 126

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
                V   + +  A+L+  E   N  +  + P+    ++ E+   +        K   +
Sbjct: 127 SPVSTVDLEEEVEEAKLQEAEALANFAVYADYPIEAFWVSEEE--LARYPLRRPPKVQGQ 184

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           VR+V +     G    A CGGTH+ ++ +   + ++     + G R
Sbjct: 185 VRLVRI-----GDFDLAACGGTHLRTSAQAGPIKVLKWERYKGGSR 225


>gi|56696797|ref|YP_167158.1| hypothetical protein SPO1923 [Ruegeria pomeroyi DSS-3]
 gi|56678534|gb|AAV95200.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 240

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 21/201 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--S 570
           V+ D++ FYA  GGQ GD+G    DG  + +    K  EG      +   G     +   
Sbjct: 29  VILDRSLFYATGGGQPGDSGLLRWDGGEMTVATTIKAGEGAIA--VLPAEGATPPPIGTE 86

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++  +D++ R      H+A HL    LS ++   VS  G  I  D  R D   + P    
Sbjct: 87  VIQELDWERRHAHMRVHTALHL----LSVVIPLEVS--GGAIAADKGRLDF--NMPEAPE 138

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYNDRVRVVSVEYE 684
           +  ++E  +  +I ++L V    +   DA      AL+ T      + + RVR+V +   
Sbjct: 139 DKAALEQALQALIERDLAVSEDWIT--DAELDANPALVKTMSVSPPRGSGRVRLVRIGQG 196

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
              V     CGGTHV+ TGEI
Sbjct: 197 ADQVDLQP-CGGTHVARTGEI 216


>gi|115352367|ref|YP_774206.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia ambifaria AMMD]
 gi|115282355|gb|ABI87872.1| Ala-tRNA(Pro) hydrolase [Burkholderia ambifaria AMMD]
          Length = 243

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/252 (25%), Positives = 99/252 (39%), Gaps = 46/252 (18%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAE 551
           A + Q + V  AV    + +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDGIRL--DRTVFYPLGGGQAGDTGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+Q R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLPYPV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKS------------IEDNVNDIIAQNLPVVT 651
               +G  +T D +R D   S  I  A+++               + + D      P + 
Sbjct: 127 ----DGCSVTSDYVRLDFATSDAIDRADVERRLAELVSGAHAVTTEWITDAEMTERPELV 182

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M+ +  +  G   LL        R+  V+ +         CGGTHV +T EI  L + 
Sbjct: 183 RTMSVKPPMGLGRVRLL--------RIAGVDLQP--------CGGTHVRNTSEIGDLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRV 238


>gi|254247630|ref|ZP_04940951.1| Threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           PC184]
 gi|124872406|gb|EAY64122.1| Threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           PC184]
          Length = 243

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A + Q E + +AV    + +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAVGDDGIRL--DRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQEASVATLAPGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   S  I   +   +E  +   +    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATSDAI---DRDDVERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|114328278|ref|YP_745435.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|122326764|sp|Q0BRP0|SYT_GRABC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114316452|gb|ABI62512.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   ++P T  +L +IE  + +IIA
Sbjct: 71  IRHDAAHVLAEAVQELFPGTQVTIGPSIE-NGFYYDFARNEPFTPEDLPAIEAKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +R+DAI        G KY  ++     + E   V+       LC G H+ 
Sbjct: 130 RNAPFEREVWDRQDAIRFFQDK--GEKYKAQLIQDLPDTETITVYRQGEWLDLCRGPHMR 187

Query: 701 STGEI 705
           STG+I
Sbjct: 188 STGDI 192


>gi|220919455|ref|YP_002494759.1| phosphoesterase DHHA1 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957309|gb|ACL67693.1| phosphoesterase DHHA1 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 406

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 151/384 (39%), Gaps = 33/384 (8%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D+T FY E GGQ  D G   G      + DVQ + +G  +H   +E        
Sbjct: 28  RPALVLDRTAFYPEGGGQPADRGRLGG----AAVVDVQ-EVDGEVLH--ALEGTPPDAGA 80

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ----NGSCITPDGLRFDVTHSK 625
            +   +D   RR     H   HLL  A     G+H         +C     +  D   + 
Sbjct: 81  PVPGEVDAARRRDHLQQHHGQHLLSAAFEATAGAHTVSFHLGAETCT----IDLDAPPAG 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYE 684
            +  A L++ E   ND++ ++LPV  R      A A  AA  L        R+V V +  
Sbjct: 137 -LGEARLRAAEARANDLVFRDLPVTARDF----APAELAALPLRKAPEKGARIVVVGDLA 191

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G V  ++ CGGTH   TG +  + ++      AG  R+E + G RA   L     +L +
Sbjct: 192 RGEVVDASPCGGTHPRRTGAVGAVAVLGAQKWGAGT-RVEFVCGARAVRALAEARGRLAA 250

Query: 745 LASFLKVSQGNVVGRVEEIWEE--YRKLQLIHAKRKLQLNVED--LSCHKIADVNFMSHI 800
            A+ L+ +   V      +  E   R+  L      L     D   +      V  +   
Sbjct: 251 AAASLRCAPAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLAAAQPAGAVRAVLAP 310

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA---R 857
            +   +  L++V   L  + ++     +G  +E +A +      D       VD+    R
Sbjct: 311 PAPGAAGYLRAVAAGLAARGRA---AFLGAEEEGRAHLAFARPRDTGPGVTGVDMGARVR 367

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPN 881
            +A  LGG GGG  P +AQ  GP+
Sbjct: 368 EAAARLGGKGGGA-PDLAQGSGPD 390


>gi|50306437|ref|XP_453192.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642326|emb|CAH00288.1| KLLA0D02794p [Kluyveromyces lactis]
          Length = 452

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 23/272 (8%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           E+    T  + E GGQ  D+G   +  G  + ++ V ++  G+   H I +R +      
Sbjct: 54  EIELQDTILFPEGGGQPSDSGKFLLKTGASIPVSSVFRR--GLHAVH-ITDRDV-PVGAK 109

Query: 571 LVLTIDYQNRRQLSINHSATHLLH---------HALSTILGSHVSQNGSCITPDGLRFDV 621
           + + ID+  R      H+  HL+            LS  +G   S+    I P  L   +
Sbjct: 110 VSVEIDWDKRLDYMQQHTGQHLVSAILEQKWGLKTLSWSMGGIPSEKKPKIEPYDLFNYL 169

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRV 678
             ++ +TS E+K + D V + I  N   +T      ++    +   +   Y+     +RV
Sbjct: 170 EINRRLTSEEVKELSDTVTEYITVNPKTITIFEGDPESQGEISTHKVPDDYDLSKGVLRV 229

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V +E  D        C GTH+ +T +I  +L + S+SS+R    R+  + G R R + + 
Sbjct: 230 VHIEDLDKNP-----CCGTHLQTTSQISSVLILPSQSSVRGTNSRLFFMCGDRVRRYALF 284

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
            +E + +    L  S+  +  + + + +  +K
Sbjct: 285 SNEVISNTKKLLSCSEDQIEHKCDMLLKNMQK 316


>gi|206900126|ref|YP_002250745.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206739229|gb|ACI18287.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 638

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSH 604
           ++KK  G  ++  + +  +   + S V  +D+++    SI  H++ H+L HA+  +    
Sbjct: 27  LEKKVFGAKINGVLSDLNVFPQDGSFVELLDWESEDGRSIYRHTSAHILAHAVKELFPEV 86

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G  I  DG  +D   S+P +  +L+ IE  + +II Q+LP+    + RE+A     
Sbjct: 87  KLGIGPAIE-DGFYYDFYRSEPFSQEDLEKIEAKMREIIKQDLPIERIEVTREEA----E 141

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSA-------LCGGTHVSSTGEIMLLYIVSES 714
             L   K + ++ ++  E  +G   S         LC G H+ STG +    ++S S
Sbjct: 142 RILKEMKEDFKLELLE-EIPEGERISFYRQGNFIDLCRGPHLPSTGWVKSFKLLSVS 197


>gi|226311191|ref|YP_002771085.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094139|dbj|BAH42581.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 637

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 18/136 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HLL  A+  I G+ V      +  DG  +D+     ++  +L  IE  +  I+ ++
Sbjct: 75  HSTAHLLAQAVKRIYGAEVKFGIGPVIEDGFYYDMDIPVSLSPEDLGKIEAEMEKIVKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGG 696
           LP+  ++++RE+A A      +  + ND +++  +           YE G      LC G
Sbjct: 135 LPIRRKVVSREEATA------IFQELNDHLKLELIRDLPEDATITLYEQGEFFD--LCRG 186

Query: 697 THVSSTGEIMLLYIVS 712
            H+ STG I    ++S
Sbjct: 187 PHLPSTGFIKAFKLMS 202


>gi|299533556|ref|ZP_07046932.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298718462|gb|EFI59443.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 639

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLAAIEKKMTELAN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV R++ R++A+       +G  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEQVVRRVLPRDEAVQYFKG--IGEAYKAEIIASIPSNEDVSLYREGAFEDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|299542048|ref|ZP_07052367.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298725471|gb|EFI66116.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 391

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 65/388 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV   T FY   GGQ  DTG        L++ DV+K  + I   H I   G L T   +V
Sbjct: 32  VVLSNTAFYPTGGGQPHDTGTLNA----LKVIDVEKVNDEI--RHYI--EGDLSTLDGVV 83

Query: 573 L-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +++  R      H+  H+L  A   +  +        +  + +  D+   + I+  +
Sbjct: 84  HGKLNWSRRFDHMQQHAGQHILTAAFVELFNAQTV--SFHLGSEQVTIDLA-IETISEQQ 140

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR--------VRVVSV-E 682
           L + E   NDII +N P+ T  +  ++         LG  YN R        +R+V +  
Sbjct: 141 LAAAEARANDIILENRPIQTTWVTEQE---------LG-NYNLRKEVAVTGDIRLVIIPN 190

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
           ++  G      CGGTH +STG++  + I+    ++  + R+  + GQR  + L  + + L
Sbjct: 191 FDYNG------CGGTHPTSTGQVSTIKILGTEKMKGNV-RVSFVCGQRVLTELGMRKKIL 243

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
             +A  L V +      + ++    +  +   A  K +L    L+    A VN    + +
Sbjct: 244 ADVARQLSVPEVEAATALSKVLSTQKTTEKALAAAKEEL----LTYEARALVNSEGVVTA 299

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED------LLDRFNAV--- 853
             + +     M  LQK     I  L  I  E+K  + ++V+E+      +  R N V   
Sbjct: 300 AFNQR----TMQELQK-----IARL--IVTEQKDVIALLVSENEGKLQFVAARGNNVSKS 348

Query: 854 --DLARLSAKVLGGGGGGGRPHMAQSGG 879
             D+A+  A  L  G GGG   M Q GG
Sbjct: 349 MKDVAQ-KALPLINGKGGGSDQMVQGGG 375


>gi|170733637|ref|YP_001765584.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia cenocepacia
           MC0-3]
 gi|169816879|gb|ACA91462.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia cenocepacia
           MC0-3]
          Length = 243

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A + Q E + +AV    + +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAVGDDGIRL--DRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVSAPGQEASVATLAPGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   S  I   +   +E  +   +    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATSDAI---DRDDVERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|299537247|ref|ZP_07050550.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727488|gb|EFI68060.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 638

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 7/124 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL   A+   L  H       +  +G  +D+  +  +T ++L+ IE  +  I+ 
Sbjct: 75  IRHSTAHLFAQAIKR-LYPHAQFGVGPVIENGFYYDIDIADTLTPSDLQQIEKKMKQIVQ 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSS 701
           +N+PV  R ++RE+A    A  +L  +  + +    +V++ YE G  +   LC G HV S
Sbjct: 134 ENIPVHRREVSREEAKQLFAHDVLKLELLEAIPADELVTI-YEQGEFYD--LCRGPHVQS 190

Query: 702 TGEI 705
           TG++
Sbjct: 191 TGKL 194


>gi|205374566|ref|ZP_03227362.1| threonyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 643

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 7/132 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  HL+  A+  + G    + G   +   G  +DV     IT  +L +IE  +  I+
Sbjct: 74  LRHSTAHLMAQAIKRLYGDESVKLGVGPVIEGGFYYDVDSEHKITPEDLPAIEKEMKKIV 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVS 700
            +NL +V   ++R++A A  A      +  D +     VS+ YE G      LC G HV 
Sbjct: 134 NENLDIVRSEVSRDEAKARFAGDEYKVELLDAIPADEAVSI-YEQGEFFD--LCRGIHVP 190

Query: 701 STGEIMLLYIVS 712
           STG+I    ++S
Sbjct: 191 STGKIKEFKLLS 202


>gi|218515175|ref|ZP_03512015.1| threonyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 328

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPDDLPKIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P   +I +RE A    AA   G +Y   +     E +D  ++       LC G H++
Sbjct: 132 RNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG++
Sbjct: 190 STGQV 194


>gi|319778289|ref|YP_004129202.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317108313|gb|ADU91059.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 646

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D ++ +P T  +L+ IE  +++++ 
Sbjct: 76  IRHSTAHLLAHAVKELFPDAQVTIGPVIN-NGFYYDFSYKRPFTPEDLQKIEKRMSELVK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           Q++ V+    +R++AI        G  Y   +        V+S+ Y  G      LC G 
Sbjct: 135 QDIAVIREEWDRDEAIEFFKKE--GELYKAEIISSIPQGEVISL-YRQGSF--VDLCRGP 189

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 190 HVPSTGKLKVFKLM 203


>gi|323447698|gb|EGB03610.1| hypothetical protein AURANDRAFT_55515 [Aureococcus anophagefferens]
          Length = 657

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + I HS +H++  A+  +    V         +G  +D    + I+  +LK I+  ++ I
Sbjct: 59  VKIRHSTSHIMALAVKRVFKDDVQVTIGPWIENGFYYDFYREEQISDKDLKRIKKEMDKI 118

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV------SVEYEDGGVHSSALCGG 696
           I  +LP++  ++ RE+A     A LL      +V V+      ++ +   G     LC G
Sbjct: 119 IKADLPIIREVVPREEA----RARLLAEGETFKVEVLDGITDDTISFYRIGDEWWDLCAG 174

Query: 697 THVSSTGEI 705
            HV STG I
Sbjct: 175 PHVPSTGAI 183


>gi|154687027|ref|YP_001422188.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166223321|sp|A7Z7I1|SYT_BACA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154352878|gb|ABS74957.1| ThrS [Bacillus amyloliquefaciens FZB42]
          Length = 643

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I        G  I  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMEQALTPDDLPKIEKEMKRIVG 132

Query: 645 QNLPVVTRIMNREDAIASGAA-------ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           +NLP++ + ++R++A A  A         LL     D    VS+ YE G      LC G 
Sbjct: 133 ENLPIIRKEVSRDEAKAMFAEIGDNLKLELLDAIPED--ETVSI-YEQGEFFD--LCRGV 187

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG+I    ++S
Sbjct: 188 HVPSTGKIKEFKLLS 202


>gi|73540970|ref|YP_295490.1| threonyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|123732957|sp|Q472N7|SYT_RALEJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72118383|gb|AAZ60646.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Ralstonia
           eutropha JMP134]
          Length = 635

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLAAIEKKMTELSR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + NR++A+A   +  +G KY   +       ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWNRDEAVALFES--MGEKYKAEIIASIPADQEIGLYREGKFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|237741554|ref|ZP_04572035.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229429202|gb|EEO39414.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 375

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 116/273 (42%), Gaps = 37/273 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I D     I +V+   E + +    +E G 
Sbjct: 11  ISDRTYEIL--NSPFYTDGKGGQLGDRG-TISDA---NIIEVK---ENLVILDKDLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                     ID + R  +   H+A H+       +  L+T+ G  +++  + I  D   
Sbjct: 61  -----EYTYFIDEKRREDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTIDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   ++ +E  VN+ I  ++ V   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEIIEKLEKLVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T +I +  I++  +I+    R   + G+RA++    
Sbjct: 167 FIKI----GDIDICA-CAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + + +K L +        ++  +++   E  K+
Sbjct: 222 KHDIIKKLTNIFSCKDDEILEMLDKSLTEKAKI 254


>gi|254168839|ref|ZP_04875680.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|197622276|gb|EDY34850.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
          Length = 233

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 26/201 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +  D+T FY   GGQ  DTG  I +G    +T V+++     +H    E+  +  E+  +
Sbjct: 28  IYLDRTAFYLGGGGQPADTGKIIANGKEYVVTGVRREDA---LHLIEGEKPEIGEEVKGI 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL-----RFDVTHSKPI 627
             ID++ R ++   H+A H+       I G    Q G  IT + L     R D++     
Sbjct: 85  --IDWERRYKIMRTHTAVHV-------ISGVAYQQFGVVITGNQLYEGRARLDLSFENMS 135

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYE 684
               ++ IE++ N ++ ++LPV    +++E+         +  K     D++RVV +E  
Sbjct: 136 KELAMQIIEES-NKVVKKDLPVRWYFISKEEFKNRPELMRVNPKLYEKYDKIRVVEIE-- 192

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
             G    A  GGTHV    EI
Sbjct: 193 --GFDIQA-DGGTHVKHLAEI 210


>gi|241663242|ref|YP_002981602.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240865269|gb|ACS62930.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 635

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKKMTELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   +++R++A+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVLSRDEAVKLFEG--MGEKYKAEIIASIPEDQEIGLYREGNFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|296135845|ref|YP_003643087.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795967|gb|ADG30757.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 639

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLEKIEVRMAELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ PV  +++ R++A+    +  LG  Y   +       ED  ++S      LC G HV 
Sbjct: 130 KDEPVRRKVLPRDEAVDYFKS--LGEHYKAEIIASIPAGEDVSLYSEGAFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG + +  ++
Sbjct: 188 STGRLKVFKLM 198


>gi|265751926|ref|ZP_06087719.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|263236718|gb|EEZ22188.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 157

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 587 HSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           H+  H+++  +  + G      +H+ +  S       + D          ++  IE+ VN
Sbjct: 23  HTTEHVINRTMVNLFGCGRAISAHIERKKS-------KLDFALQTCPEETDITRIENTVN 75

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           +++ +NLPV    +++E+AI       L  K ++ VR+V V     G +   LC G HV 
Sbjct: 76  EVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----GDYDECLCIGQHVK 130

Query: 701 STGEIMLLYIVS 712
           +T EI    I+S
Sbjct: 131 NTSEIGTFKIIS 142


>gi|126307888|ref|XP_001362694.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           isoform 1 [Monodelphis domestica]
          Length = 546

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 32/273 (11%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G +I +   L++T    +A+   +       
Sbjct: 169 KEKLSG--YHVVLEDTLLFPEGGGQPDDRG-SIDNIPVLRVTRRGSEADHFLL------- 218

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS--QNGSCITPDGLRFD 620
             L     + + +D++ R      HS  HL+      + G   +  + G C      R  
Sbjct: 219 TPLAPGSQVQVQLDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWELGRC------RST 272

Query: 621 VTHSKPITSAE-LKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRV 678
           +    P+   E + +IE +VN+ I   LPV+ + ++ +D  +       L   +   +RV
Sbjct: 273 IELDSPMVLPEQIVAIEQSVNEKIRSRLPVIVKELSPDDPEVEKVRGRGLPDDHAGPIRV 332

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +++E    GV S+ +C GTHV +  ++ ++ I+     +     I  +TG R    +   
Sbjct: 333 ITIE----GVDSN-MCCGTHVGNLSDLQVIKILGTEKGKKNKTNIVFLTGNRVLKWMERS 387

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
               K+L S LK         VEE  E  +KLQ
Sbjct: 388 HGSQKALTSLLKCG-------VEEHAEAVQKLQ 413


>gi|195564917|ref|XP_002106055.1| GD16642 [Drosophila simulans]
 gi|194203425|gb|EDX17001.1| GD16642 [Drosophila simulans]
          Length = 436

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 35/268 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ + T  + E GGQ  D G   G      + +VQ+K  G+   H +        +  ++
Sbjct: 43  VICEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GLTAVHFVESPTSFEQDAEVL 96

Query: 573 LTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           LT+DYQ R      HS  HL+         +   S  LGS VS          ++    H
Sbjct: 97  LTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVSY---------IQLSTPH 147

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVS 680
              I+   L  IE   ND+I +   V   +++ E A     + A   L   +    RVV 
Sbjct: 148 L--ISRESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVR 205

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E    G+ S+ +C GTHV++  ++  + ++    +++ +  +  + G+R    L    +
Sbjct: 206 IE----GIESN-MCCGTHVTNLSQLQCIKLLYAEKVKSNV-LVHFVVGERVLVKLGEVFQ 259

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           + + L + LK   G  +  V+++ +  +
Sbjct: 260 REQQLTAALKGGPGQHLELVQKLQQNVK 287


>gi|46907789|ref|YP_014178.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b F2365]
 gi|47093096|ref|ZP_00230873.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217964294|ref|YP_002349972.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|226224160|ref|YP_002758267.1| threonyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824382|ref|ZP_05229383.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852182|ref|ZP_05241530.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|254931499|ref|ZP_05264858.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|255520160|ref|ZP_05387397.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|290893960|ref|ZP_06556936.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|300764775|ref|ZP_07074765.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|67461796|sp|Q71ZA9|SYT_LISMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783526|sp|B8DHI9|SYT_LISMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516560|sp|C1KVK6|SYT_LISMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46881058|gb|AAT04355.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018536|gb|EAL09292.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217333564|gb|ACK39358.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|225876622|emb|CAS05331.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605487|gb|EEW18095.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|290556498|gb|EFD90036.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|293583051|gb|EFF95083.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293593617|gb|EFG01378.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514451|gb|EFK41508.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|307571140|emb|CAR84319.1| thrS [Listeria monocytogenes L99]
 gi|313608610|gb|EFR84472.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
 gi|328465594|gb|EGF36823.1| threonyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 640

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|294793964|ref|ZP_06759101.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455534|gb|EFG23906.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 636

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA+H+L  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 72  TLRHSASHILAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHILTPEDLGKIEKEMSRIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M R++AI          K  D +V ++    ED  +   +      LC G
Sbjct: 131 KENLPITKSVMPRQEAI-----EFFKAKNEDYKVELIQDLPEDAVISCYSQGDFIDLCAG 185

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 186 PHVASTGKV 194


>gi|313202649|ref|YP_004041306.1| threonyl/alanyl tRNA synthetase sad [Paludibacter propionicigenes
           WB4]
 gi|312441965|gb|ADQ78321.1| Threonyl/alanyl tRNA synthetase SAD [Paludibacter propionicigenes
           WB4]
          Length = 151

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+  H+L+  +  + G   S N   I     + D   S+  T  ++  + D VN +I Q+
Sbjct: 17  HTCEHILNQTMIRMFGCPRSMNAH-IEKKKSKCDYVLSEAPTEEQISELVDKVNAVINQH 75

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV    M+R+DA      + L     + +R++ V     G + +  C G HVS+T E+ 
Sbjct: 76  LPVTIDFMDRKDAAQLVDLSKLPADATETLRIIRV-----GDYDACACIGQHVSNTAELG 130

Query: 707 LLYIVS 712
              I+S
Sbjct: 131 RFEIIS 136


>gi|218886217|ref|YP_002435538.1| threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757171|gb|ACL08070.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 148

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 19/143 (13%)

Query: 587 HSATHLLH------HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           H+A H+L+      H       +HV+       P   + D      +  AE ++IE  VN
Sbjct: 10  HTAEHVLNGVMVARHGCGRCFSAHVN-------PKKSKCDYHFDHQLDDAEARAIEAEVN 62

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +++ NLPV+   M+R +A +      L     D +R+V V     G   +  C GTHV+
Sbjct: 63  RVLSGNLPVIAVDMDRAEAASRFDLGRLPDDAGDTLRIVRV-----GDFDACPCSGTHVA 117

Query: 701 STGEIMLLYIVSESSIRAGIRRI 723
           +T E+    I+S      G+ R+
Sbjct: 118 NTAEVGTFRIISH-DFENGVLRV 139


>gi|302891482|ref|XP_003044623.1| hypothetical protein NECHADRAFT_98240 [Nectria haematococca mpVI
           77-13-4]
 gi|256725547|gb|EEU38910.1| hypothetical protein NECHADRAFT_98240 [Nectria haematococca mpVI
           77-13-4]
          Length = 262

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 19/219 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           +V   T FYA+ GGQ  DTG   ++       +T VQK   G  +H         + +M 
Sbjct: 52  IVTSSTIFYAKGGGQPSDTGTMTSLDQTSTFTVTSVQKLPSGTIMHLGTYSGNPFQEKML 111

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   I+   R+  S  H A H+L  A+  +    + +  +   PD + F V     I   
Sbjct: 112 VAQKINKDARKLHSQIHDAGHILALAVRRLGIPDLREVKAQHYPD-VAF-VEFQGIIGGD 169

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSVEYEDGGV 688
           + + IE   N+I+  +  +  R  + E+  A        +G   ND +R V +E E    
Sbjct: 170 KKEEIERIANEIVGHDRSIAVRWWSPEELKAKSWTMPEDIGDG-NDLIRAVEIEGE---- 224

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             + +CGGTHV ST       +V +  +R  I+R + IT
Sbjct: 225 -GAYMCGGTHVKSTA------LVGKLKVRK-IKRQQGIT 255


>gi|254304123|ref|ZP_04971481.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324315|gb|EDK89565.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 373

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 116/273 (42%), Gaps = 37/273 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I D     I +V+   E + +    +E G 
Sbjct: 11  ISDKTYEIL--NSPFYVDGKGGQLGDRG-TIFDA---NIIEVR---ENLVILDKNLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                     ID + R  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 61  -----EYTYFIDEKRREDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   +  +E+ VN+ I +++ +   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEVIDKLEELVNNDIKKDIIIEEEIYTNEEAHKIENLRKAIKDKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T EI +  ++   +I+    R   + G+RA++    
Sbjct: 167 FIKI----GDIDICA-CAGFHVSRTSEIEIFKLIYHENIKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + + +K L +        ++  +++   E  K+
Sbjct: 222 KHDIIKKLTNIFSCKDDEILEMLDKSLTEKAKI 254


>gi|222479402|ref|YP_002565639.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452304|gb|ACM56569.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
          Length = 293

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 92/241 (38%), Gaps = 52/241 (21%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDG---------------IRLQITDVQKK------- 549
           VV DQT FY   GGQ  DTG   + D                 R ++ DV+KK       
Sbjct: 27  VVLDQTHFYPTGGGQPHDTGTLRVADAEMADGDGVADGDDADRRWRVVDVEKKDTVYHTL 86

Query: 550 ------AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
                 A G     A      L     +V  ID   RR  S  H+A HLL   L     +
Sbjct: 87  EPAGDGASGAGDDSATDTVAPLEPGTVVVGEIDAARRRAHSRYHTAQHLLSALLLAEFDA 146

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS- 662
             S  G+ +  D    D  + +     +L  IE  +N+++A   PV +  MNRE+A A+ 
Sbjct: 147 --STTGNQLYDDHAHLDAAYER-FDDGDLVQIETRLNELVADERPVTSYTMNREEAEATL 203

Query: 663 ----GAAALLGTKYNDRVRVVSVEYEDGGV--------------HSSALCGGTHVSSTGE 704
                   LL    ++ +R+V +    G                +    C GTHV++T E
Sbjct: 204 DTDRTRIDLLPDSISE-LRIVEIGAARGTDGNDGDDGDDGNKEPYDRTACAGTHVANTAE 262

Query: 705 I 705
           I
Sbjct: 263 I 263


>gi|16800662|ref|NP_470930.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|22654125|sp|Q92BF5|SYT_LISIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16414081|emb|CAC96825.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|313618753|gb|EFR90658.1| threonyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 640

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFEA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|254828206|ref|ZP_05232893.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600595|gb|EEW13920.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 640

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|254831960|ref|ZP_05236615.1| threonyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 640

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|254468875|ref|ZP_05082281.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087685|gb|EDZ64968.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 652

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  DG  +D ++ +  T  +L +IE  + +++ 
Sbjct: 88  IRHSTAHLLAYAVKELFPEAQVTIGPTID-DGFYYDFSYHRAFTPEDLSAIEKKMAELVK 146

Query: 645 QNLPVVTRIMNREDAIA-------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           ++  V   +M R+DA+           A ++G+   D    V   Y +G    S LC G 
Sbjct: 147 EDHAVTREVMKRDDAVKFFLDQGEKYKAEIIGSIPQDEEVTV---YHEGKF--SDLCRGP 201

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 202 HVPSTGKLKVFKLM 215


>gi|126735839|ref|ZP_01751584.1| hypothetical protein RCCS2_18226 [Roseobacter sp. CCS2]
 gi|126715026|gb|EBA11892.1| hypothetical protein RCCS2_18226 [Roseobacter sp. CCS2]
          Length = 238

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT---EM 569
           +V D T FY  +GGQ GD+G     G  + I     K EG  V     E   + T   ++
Sbjct: 28  IVLDGTIFYPTSGGQPGDSGTLRWKGREIDIA-TTVKGEGDAVVLVPAEPAGMPTIGQDV 86

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           + VL  D + R      H   H   H LS ++   VS  G  I  +  R D     P   
Sbjct: 87  TQVLNWDRRYR------HMRVHTALHLLSVVIPLPVS--GGSIGAEKGRLDF--DMPEAP 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
            +  ++ED++N +IA N+ V    ++ E+  A        ++   +   R+R+V +   D
Sbjct: 137 EDKTALEDDINRLIACNMHVTEEWISDEELDAQPDLVKTMSVQPPRGTGRIRLVRIGVGD 196

Query: 686 GGVHSSALCGGTHVSSTGEI 705
                   CGGTHV++T EI
Sbjct: 197 ETADLQP-CGGTHVANTEEI 215


>gi|126307890|ref|XP_001362776.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           isoform 2 [Monodelphis domestica]
          Length = 415

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 32/273 (11%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G +I +   L++T    +A+   +       
Sbjct: 38  KEKLSG--YHVVLEDTLLFPEGGGQPDDRG-SIDNIPVLRVTRRGSEADHFLLTP----- 89

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS--QNGSCITPDGLRFD 620
             L     + + +D++ R      HS  HL+      + G   +  + G C      R  
Sbjct: 90  --LAPGSQVQVQLDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWELGRC------RST 141

Query: 621 VTHSKPITSAE-LKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRV 678
           +    P+   E + +IE +VN+ I   LPV+ + ++ +D  +       L   +   +RV
Sbjct: 142 IELDSPMVLPEQIVAIEQSVNEKIRSRLPVIVKELSPDDPEVEKVRGRGLPDDHAGPIRV 201

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +++E  D     S +C GTHV +  ++ ++ I+     +     I  +TG R    +   
Sbjct: 202 ITIEGVD-----SNMCCGTHVGNLSDLQVIKILGTEKGKKNKTNIVFLTGNRVLKWMERS 256

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
               K+L S LK         VEE  E  +KLQ
Sbjct: 257 HGSQKALTSLLKCG-------VEEHAEAVQKLQ 282


>gi|326492063|dbj|BAJ98256.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326499331|dbj|BAK06156.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 667

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E  +VL  +  +   L I H+  H++  A+  +  +     G  I  +G  +D    +P+
Sbjct: 82  EARVVLPTNESSENLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWID-NGFYYDFD-MEPL 139

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEY 683
           T  +LK I+  ++ II +NLP+V   ++RE+A     A  L   Y     +R++   +  
Sbjct: 140 TDKDLKKIKKEMDRIIRRNLPLVREEVSREEAQKRIQA--LNEPYKLEILERIKEEPITI 197

Query: 684 EDGGVHSSALCGGTHVSSTGEI 705
              G     LC G HV STG+I
Sbjct: 198 YHIGEEWWDLCAGPHVESTGKI 219


>gi|225432302|ref|XP_002273600.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 256

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D T F+ + GGQ  DTG  AI +  I+  + DV+ K +G+  H+  +E      E  
Sbjct: 36  LILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRSK-DGVVFHYGFIENSNEELESK 94

Query: 571 L------VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L       L +D   R+  S  HSA HLL   + T+   ++        PDG   +    
Sbjct: 95  LEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLGNLEPGKGYHFPDGPFVEYKGV 154

Query: 625 KPIT--SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL---LGTKYNDRVRVV 679
            P      + K +E + N +I++   V   ++   +A+      L   +    N R+  +
Sbjct: 155 VPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVELCGGCLPDYIPKSSNPRILKL 214

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                  G +    CGGTHVS   EI+ +  V++   + G+ ++    G
Sbjct: 215 -------GDNPGCPCGGTHVSDISEIISVK-VTQIRTKKGVTKVYYTIG 255


>gi|313623625|gb|EFR93788.1| threonyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 640

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFEA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|237745019|ref|ZP_04575500.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|260494796|ref|ZP_05814926.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_33]
 gi|229432248|gb|EEO42460.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|260197958|gb|EEW95475.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_33]
          Length = 375

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 113/262 (43%), Gaps = 35/262 (13%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G  I D   +++       E + + +  +E G           I
Sbjct: 20  NSPFYIDGKGGQLGDRG-TISDANIIEV------KENLVILNKNLEDG------EHAYFI 66

Query: 576 DYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           D + R  +S  H+A H+       +  L+T+ G  +++  + +  D         K I+ 
Sbjct: 67  DEKRREDISQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--------QKDISK 117

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +  +++ VN+ I +++ +  +I   E+A         +  K    VR + +    G +
Sbjct: 118 EIIDKLDELVNNDIKKDIVIEEKIYTNEEAHKIENLRKAIKDKIKGDVRFIKI----GDI 173

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
              A C G HVS T +I +  I++  +++    R   + G+RA++    + + +K L + 
Sbjct: 174 DICA-CAGFHVSRTSQIEIFKIINYENVKGNYTRFYFLAGERAKADYNKKHDIIKKLTNI 232

Query: 749 LKVSQGNVVGRVEEIWEEYRKL 770
                  ++  +++   E  K+
Sbjct: 233 FSCKDDEILEMLDKSLTEKSKI 254


>gi|238920792|ref|YP_002934307.1| alanyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|238870361|gb|ACR70072.1| alanyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
          Length = 255

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 43/211 (20%)

Query: 514 VFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQK--------KAEGIFVHHAIVERG 563
           VFD+T FYAE+GGQ+ D G   A+  G    + DVQ         K EG+ V    VE  
Sbjct: 42  VFDRTIFYAESGGQVCDVGSIRAVVGGAPCPVVDVQHKLGHRLYIKREGVNVPLVDVETR 101

Query: 564 I---------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           I         L+    +++ I++  R  +  +H+  H L  A S    +  S  G  I  
Sbjct: 102 IVHRLAYAPNLQPGDRVIMQINWSRRYAIMRHHTLAHFLFSAFSRHFSASASVKGCIIDA 161

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
               F +   K ++  +  +I+    +++AQ  P+        D        L    Y +
Sbjct: 162 QKAVFSL--DKKLSDDDFSAIQSYTREMLAQGSPMWIEPAPETD-------TLFYWNYGE 212

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +                 CGGTHV +  EI
Sbjct: 213 TI---------------IPCGGTHVQALAEI 228


>gi|34496803|ref|NP_901018.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|73919781|sp|Q7NYC6|SYT_CHRVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34102658|gb|AAQ59023.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 633

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 13/135 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPEIE-NGFYYDFAYKRPFTPEDLAAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +++PV    + R++AIA   +  +G  Y   +        V+S+ Y +G    + LC G 
Sbjct: 130 KDIPVERYELPRDEAIAYFKS--IGEAYKAEIIESIPQGEVLSL-YREGEF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG++ +  ++ 
Sbjct: 185 HVPSTGKLKVFKLMK 199


>gi|16803599|ref|NP_465084.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501501|ref|ZP_03669808.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|22654119|sp|Q8Y6X2|SYT_LISMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16410988|emb|CAC99637.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 640

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|87303299|ref|ZP_01086092.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
 gi|87282194|gb|EAQ74155.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
          Length = 603

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 16/131 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I HS +H+L  A+  +  S     G   T +G  +D  + +P T A+LK+I+  +  I
Sbjct: 22  LRIRHSMSHVLAMAVQKLFPSSQVTIGPW-TENGFYYDFDNPEPFTEADLKAIKKEMGKI 80

Query: 643 IAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IA+ LP+    ++RE A A   A         L G +    +  +  E+ D       LC
Sbjct: 81  IARKLPLQRLEVSREQAEARIKAQNEPYKLEILAGIQEPITLYTLGDEWWD-------LC 133

Query: 695 GGTHVSSTGEI 705
            G HV++T E+
Sbjct: 134 AGPHVANTSEL 144


>gi|312795972|ref|YP_004028894.1| Threonyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167747|emb|CBW74750.1| Threonyl-tRNA synthetase (EC 6.1.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 643

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  +  +G  +D  + +  T  +L+SIE  ++++  
Sbjct: 79  IRHSTAHLLAYAVKELFPQAQVTIGPVVD-NGFYYDFAYHRAFTPEDLQSIEQRMHELAK 137

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++ PV  R+++R++A+       +G +Y   + + S+        Y  GG   + LC G 
Sbjct: 138 KDEPVSRRVVSRDEAV--DYFKRIGERYKAEI-IESIPQGEQIKLYSHGGF--TDLCRGP 192

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 193 HVPSTGKLKVFKLM 206


>gi|284801950|ref|YP_003413815.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995092|ref|YP_003416860.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057512|gb|ADB68453.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060559|gb|ADB71498.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 640

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|282164324|ref|YP_003356709.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
 gi|282156638|dbj|BAI61726.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
          Length = 215

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   +  S   V V+ + T F+   GGQ GD+G   G    +++ D      G  VH  I
Sbjct: 14  EFKSKVASVDGVNVILEDTYFFPRGGGQTGDSGTIGG----VKVVDTV-AGNGRIVH--I 66

Query: 560 VERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVS-QNGSCITPDGL 617
           +E         +V   ID++ R +    HSA+H++++ +  + G   +  +   +  +  
Sbjct: 67  MESAPSFKAGDMVECAIDWEKRYRKMRLHSASHIVYYLMKEVFGDACTIASSGLLDENKE 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           R D     P+  A+LK +ED  N +IA+   + T
Sbjct: 127 RSDYLFEAPLDKAKLKEVEDRANALIAEGWDIKT 160


>gi|288926990|ref|ZP_06420885.1| alpha-amylase family protein [Prevotella buccae D17]
 gi|288336236|gb|EFC74622.1| alpha-amylase family protein [Prevotella buccae D17]
          Length = 712

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +M+  L ++  N+ +    H+A HLL+  +  + G   S+N            V   KP 
Sbjct: 557 DMNEDLILNGHNKDEFPPAHTAEHLLNRLMMRMFGCERSRNAHIERKKSKISYVLDHKP- 615

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E K+I D +N +IA++LPV   +++R+          L     +++R+V +     G
Sbjct: 616 TRKEEKAIADEMNRLIAEDLPVTYEMVDRDHIPEGVTLDRLPDTAGEKLRLVRI-----G 670

Query: 688 VHSSALCGGTHVSSTGEI 705
            +    C G HV STG+I
Sbjct: 671 DYDVCPCIGKHVRSTGQI 688


>gi|255513359|gb|EET89625.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 237

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 17/236 (7%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A V+  E    +V  Q VE   D+T FY   GGQ  D+G       R ++ +V K  + +
Sbjct: 10  AYVKDFEATVSSVDNQIVE--LDRTAFYPTGGGQPSDSGTISFGNSRYKVIEVSKSGDSV 67

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
              H +     L     +   +D++ R      H+A H++   +   L  +++  G  I 
Sbjct: 68  L--HKMENAQGLEAGTQIEGHLDWEKRYMHMRLHTALHIIDGVVHKNLDGNIT--GGQIY 123

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-----IASGAAALL 668
            D  R D      +   +++ I +   +I+ + L V  + M++E+A     IA  A    
Sbjct: 124 DDRARMDFD-VPGLDRQKVEKIIEAAQEIVDKRLTVSVKFMSKEEASAVPGIARTAPGEE 182

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             +  D +R++ +E  D       L GGTHV++T E+  + I+   +  +  +RIE
Sbjct: 183 LMRKLDIIRIIDIEGFD-----FQLDGGTHVANTSEVGKIGIIKYENKGSHNKRIE 233


>gi|315608749|ref|ZP_07883727.1| alpha-amylase [Prevotella buccae ATCC 33574]
 gi|315249599|gb|EFU29610.1| alpha-amylase [Prevotella buccae ATCC 33574]
          Length = 712

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +M+  L ++  N+ +    H+A HLL+  +  + G   S+N            V   KP 
Sbjct: 557 DMNEDLILNGHNKDEFPPAHTAEHLLNRLMMRMFGCERSRNAHIERKKSKISYVLDHKP- 615

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E K+I D +N +IA++LPV   +++R+          L     +++R+V +     G
Sbjct: 616 TRKEEKAIADEMNRLIAEDLPVTYEMVDRDHIPEGVTLDRLPDTAGEKLRLVRI-----G 670

Query: 688 VHSSALCGGTHVSSTGEI 705
            +    C G HV STG+I
Sbjct: 671 DYDVCPCIGKHVRSTGQI 688


>gi|224826514|ref|ZP_03699615.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224601115|gb|EEG07297.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 632

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPEIE-NGFYYDFSYKRPFTPEDLVAIEKKMGELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +++PV    + R++AIA   +  +G  Y   +        V+S+ Y +G    + LC G 
Sbjct: 130 KDIPVERYELPRDEAIAYFKS--IGEHYKAEIIESIPQGEVLSL-YREGDF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|257875532|ref|ZP_05655185.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809698|gb|EEV38518.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 646

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 11/146 (7%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   L + HS  HL+  A+  +  S     G  I   G  +D  + + P+T+ 
Sbjct: 60  IVTPDHEDALGL-LRHSTAHLMAQAMRRLYPSIHFGVGPAID-SGFYYDTDNGENPVTAE 117

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDG 686
           +L +IE  +  II +NLP+  R++ +E+A+   A       L T+  D   + +  Y+ G
Sbjct: 118 DLPAIEAEMMKIIKENLPIERRVLTKEEALTLFAEDPYKVELITELPDDETITA--YQQG 175

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I +  ++S
Sbjct: 176 EF--VDLCRGPHVPSTGRIQVYKLLS 199


>gi|256844889|ref|ZP_05550347.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_36A2]
 gi|256718448|gb|EEU32003.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_36A2]
          Length = 375

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 37/260 (14%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I D   + I +V+   E + +    +E G 
Sbjct: 11  ISDKTYEIL--NSPFYVDGKGGQLGDRG-TISD---VNIVEVK---ENLVILDKNLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                     ID + R  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 61  -----EYTYFIDEKRREDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   +  +E+ VN+ I  ++ V   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEIIDKLEELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T +I +  I++  +I+    R   + G+RA++    
Sbjct: 167 FIKI----GDIDICA-CAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVV 757
           + + +K L +        ++
Sbjct: 222 KHDIIKKLTNIFSCKDDEIL 241


>gi|317155876|ref|XP_001825428.2| alanyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 299

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 38/232 (16%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQ 547
           +  + +  + + + V+ +   +   +T FY + GGQ  DTG        +G   ++  V+
Sbjct: 59  ISQLTENEKSLAKTVAPESFALTTRETVFYPQGGGQPSDTGVITLADKSNGSTFKVLLVR 118

Query: 548 KKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHA---LSTILG- 602
           K  +G  +H          T+  LV   ID+  R   S  H+A H++  A   L+ +LG 
Sbjct: 119 KTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTAGHIIGLAMRLLAPVLGE 178

Query: 603 -----SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT------ 651
                ++ +   +C+  +GL +  T  K +       IED VN+++   LPV T      
Sbjct: 179 RKKVKANHAPGQACMEFEGLLY--TEHKSV-------IEDKVNELVGMKLPVTTEWWDED 229

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           RI N +  +  G    L    N + R+  +    G + ++  CGGTHV  TG
Sbjct: 230 RIQNADLNMVEG----LQLGKNGQARIAMI----GDIDANP-CGGTHVEHTG 272


>gi|293607159|ref|ZP_06689501.1| threonyl and alanyl tRNA synthetase domain protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292814493|gb|EFF73632.1| threonyl and alanyl tRNA synthetase domain protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 239

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 35/215 (16%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           AV+ + +E+  D+T  YA +GGQ  D+G   + DG  + + D     +   + H +    
Sbjct: 23  AVTPEGIEL--DETICYARSGGQASDSGTLTLPDGRVVALADTVYADDRQRILHVL---A 77

Query: 564 ILRTEMS------LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           +   E S      + + ID+  R +L   H+  HLL      ++ + V+  G  I+PD  
Sbjct: 78  LAEGEASPAVGDRVTVAIDWPRRHRLMRLHTCLHLL----GALVPAPVT--GCSISPDSA 131

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGT 670
           R D     P ++ E   + + +N +I + L V    +  E+  A        GAA   GT
Sbjct: 132 RIDF--DLPESTLEKGELTERLNALINRGLDVTVTGITPEELAAQPDLVRTVGAAPPTGT 189

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
               ++R+V V     GV     CGGTHV +T EI
Sbjct: 190 A---KIRIVDVP----GVDRQP-CGGTHVRNTSEI 216


>gi|253998429|ref|YP_003050492.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|313200504|ref|YP_004039162.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|253985108|gb|ACT49965.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|312439820|gb|ADQ83926.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 640

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKELFPEAQVTIGPVID-NGFYYDFSYKRPFTPEDLEAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++  V  +++ R++A+A   +  +G  Y   +       +D  +++    + LC G HV 
Sbjct: 135 KDEQVTRKVLPRDEAVAYFQS--IGEAYKAEIIASIPADQDVSLYTEGNFTDLCRGPHVP 192

Query: 701 STGEI 705
           STG++
Sbjct: 193 STGKL 197


>gi|260943063|ref|XP_002615830.1| hypothetical protein CLUG_04712 [Clavispora lusitaniae ATCC 42720]
 gi|238851120|gb|EEQ40584.1| hypothetical protein CLUG_04712 [Clavispora lusitaniae ATCC 42720]
          Length = 442

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 117/264 (44%), Gaps = 21/264 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V F  T  + E GGQ  DTG  I  +   +++  V +  +G+   H + +   + T ++L
Sbjct: 57  VEFKDTVLFPEGGGQPSDTGAIILPNETAIEVQQVLR--QGLKAVHVVPQPVEIGTNVTL 114

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D+  R  +   H+  HL+    S +  ++  +  S    D + + +   K +    
Sbjct: 115 --KVDWDRRIDIMQQHTGQHLI----SAVFDTYDLETLSWSMGDMINY-IELPKKVDDDI 167

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDGGV 688
           L+ +   VND+I Q +P+   +   ++       + +   Y+     +R+V +     G 
Sbjct: 168 LEEVSQKVNDLILQAIPIT--VTTPDEHGGEIDTSHIPDDYDLSKGIIRIVKI-----GD 220

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA-S 747
             +  C GTH++ST ++  +  + +++IR G  R+  + G R    L    + LK  + S
Sbjct: 221 LDANPCCGTHLTSTSQVQGVSFLHQANIRGGHSRLHFVCGSRVSKLLTSYHKILKDTSGS 280

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQ 771
            L  S   V  +V ++   Y+K Q
Sbjct: 281 SLSCSIEEVSQKVSDLNMNYKKSQ 304


>gi|169831543|ref|YP_001717525.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638387|gb|ACA59893.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 635

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           LT + ++ R L   HS +H+L  A+  +        G  +T DG  +D    +  T  +L
Sbjct: 59  LTFEDEDAR-LVYRHSTSHVLAQAVKRLYPEARLAIGPAVT-DGFYYDFDVPRTFTPEDL 116

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-------VEYED 685
           + IE  + DIIA +LP+    ++R++A+      + G   N +V ++S       + +  
Sbjct: 117 ERIESEMEDIIAADLPIERFELSRDEAL----ELVGGDGENYKVELISGLGPDEVISFYR 172

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
            G  +  LC G HV STG I  + ++S
Sbjct: 173 QGEFTD-LCAGPHVPSTGRIKAVKLLS 198


>gi|194289383|ref|YP_002005290.1| threonyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|238692758|sp|B3R4J1|SYT_CUPTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193223218|emb|CAQ69223.1| threonine tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 635

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLAAIEKKMTELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + NR++A+A   +  +G KY   +       ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWNRDEAVALFES--MGEKYKAEIIGSIPADQEIGLYREGNFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|167565993|ref|ZP_02358909.1| alanyl-tRNA synthetase-related protein [Burkholderia oklahomensis
           EO147]
 gi|167574538|ref|ZP_02367412.1| alanyl-tRNA synthetase-related protein [Burkholderia oklahomensis
           C6786]
          Length = 239

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 33/206 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--S 570
           V   Q PFY   GGQL D G    +G    +T  ++   G+++  A       R E+   
Sbjct: 27  VRLSQHPFYPGGGGQLPDLGAVRWEGGVETVTGFREDERGLWIEFAD------RVEIVGD 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI--- 627
           +  ++D   RR +   H+  H+L+  +      +   +G+ +T  G++ +   +  I   
Sbjct: 81  VQSSVDAAFRRAMRELHTDLHVLNALV------YRDFDGALVT--GVQMNADRTARIDFD 132

Query: 628 ----TSAELKSIEDNVNDIIAQNLPVVTRIM-----NREDAIASGAAALLGTKYNDRVRV 678
                +  L+++E  +NDI+ ++LPV TR +      +E  +    +       +  VR+
Sbjct: 133 LPDADNDRLRALEAELNDIVRRDLPVRTRYVPLAEAQQESGLLRSRSVAPPPTPDGLVRI 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGE 704
           V ++    G+   A CGGTH++STGE
Sbjct: 193 VEID----GLDCQA-CGGTHLASTGE 213


>gi|294792093|ref|ZP_06757241.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457323|gb|EFG25685.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 641

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 77  TLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHTLTPEDLGKIEKEMSRIV 135

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M R++AI          K  D +V ++    ED  +   +      LC G
Sbjct: 136 KENLPITKSVMPRQEAI-----EFFKAKNEDYKVELIQDLPEDAVISCYSQGDFIDLCAG 190

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 191 PHVASTGKV 199


>gi|330470347|ref|YP_004408090.1| threonyl/alanyl tRNA synthetase SAD [Verrucosispora maris
           AB-18-032]
 gi|328813318|gb|AEB47490.1| threonyl/alanyl tRNA synthetase SAD [Verrucosispora maris
           AB-18-032]
          Length = 245

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMS 570
           +V D++ FY   GGQ  D G  +  G++ ++    +KA+ +++   I   G  +  T  +
Sbjct: 35  IVLDRSAFYPGGGGQPPDHGVLLWQGVQTRVVGT-RKADDLWL---IPAEGDPLPPTGTT 90

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ++   R +L   HS  H+L   +    G+ V+  G  + P   R D   + P   +
Sbjct: 91  VTGAVEDDRRTRLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDF--NLPEVPS 146

Query: 631 ELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYED 685
           + KS IE+ VN  +A +  V TR++ R +A+A     ++ T+ N    D   V  V+   
Sbjct: 147 DFKSRIEELVNAEVAADRAVATRVLPRVEALA--LPDIIRTQSNLIPPDEAEVRIVDIVG 204

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             V +    GGTHV+ST +I  + +V   S     RR+
Sbjct: 205 LDVQAD---GGTHVASTAQIGKVRVVKVESKGRANRRV 239


>gi|313885013|ref|ZP_07818765.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619704|gb|EFR31141.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 651

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I  +G  +D    + +T A+L  IE  +  I++
Sbjct: 73  LRHSTAHLMAQAMKRLYPEIHFGVGPAIE-NGFYYDTDKPEALTDADLPKIEKEMKKIVS 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----EYEDGGVHS----SALCGG 696
           QN P+  R+++RE+A        L    +D  +V  +    E E+  V++    + LC G
Sbjct: 132 QNYPIEGRVVSREEA--------LDIFQDDPYKVELINDLPENEEISVYTQGEFTDLCRG 183

Query: 697 THVSSTGEIMLLYIVS 712
            HV STG+I    ++S
Sbjct: 184 GHVPSTGKIKAFKLLS 199


>gi|50288005|ref|XP_446431.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525739|emb|CAG59358.1| unnamed protein product [Candida glabrata]
          Length = 456

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 138/328 (42%), Gaps = 39/328 (11%)

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD--QTPFYAEAGGQLGDTG-C 533
           CQ+ P  L +  ++++  +    +  ++ + G++   V +   T  + E GGQ  DTG  
Sbjct: 14  CQREPFLLEDFETNVISCVKVDSKTAKKFLIGKEATHVLELEDTILFPEGGGQPSDTGYV 73

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAI---VERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            + D    +I  V+   EG+   H +   +E G       + L +D + R      H+  
Sbjct: 74  TLRDDETKRINVVKVVREGLHAKHYVDQAIEPG-----SKISLHVDKEKRLDYMQQHTGQ 128

Query: 591 HLLH----------HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           HLL             LS  +G   S     + P      +   + ++  E+  I D  N
Sbjct: 129 HLLSAILDNYYDNADTLSWSMGGIPSTKKPILEPSDYLNYLELPRKLSKDEISEITDKFN 188

Query: 641 DIIAQN-LPVVTR---IMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSAL 693
           +I++ N +P+  +    + + ++I   +   +   Y+  +   R +++     G      
Sbjct: 189 EIVSTNVMPITVKETIAVEKSESIEDVSTKKIPDDYDYTLGVLRTINI-----GELDKNP 243

Query: 694 CGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           C GTH+++T ++  + I+ ++S++R    R+  + G+R   +     + + S    L  S
Sbjct: 244 CCGTHLTATSQVQSILILDNQSTVRGTNSRLYFMCGKRVSLYAKMLTDYISSAKVELSCS 303

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           +  +  +V  + E  +K     AK+K Q
Sbjct: 304 ESQISSKVVALKENLQK-----AKKKEQ 326


>gi|52081397|ref|YP_080188.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786773|ref|YP_092602.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319647305|ref|ZP_08001527.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
 gi|52004608|gb|AAU24550.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349275|gb|AAU41909.1| ThrS [Bacillus licheniformis ATCC 14580]
 gi|317390652|gb|EFV71457.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
          Length = 643

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+   L  +V      +  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLMAQAIKR-LYKNVKLGVGPVIENGFYYDVDLEEALTPEDLPKIEKEMKKIVG 132

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +NLP+V + ++RE+A A  A     L  +  D +     VS+ YE G      LC G HV
Sbjct: 133 ENLPIVRKEVSREEARALFAEIGDDLKLELLDAIPEGETVSI-YEQGEFFD--LCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I    ++S
Sbjct: 190 PSTGKIKEFKLLS 202


>gi|171321067|ref|ZP_02910049.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MEX-5]
 gi|171093659|gb|EDT38811.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MEX-5]
          Length = 243

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 99/252 (39%), Gaps = 46/252 (18%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAE 551
           A + Q + V  AV    + +  D+T FY   GGQ GD+G   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDGIRL--DRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+Q R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLPYPV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKS------------IEDNVNDIIAQNLPVVT 651
               +G  +T D +R D   S  I  A+++               + + D      P + 
Sbjct: 127 ----DGCSVTADYVRLDFATSDAIDRADVERRLAELVRGAHAVTTEWITDAEMTERPELV 182

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M+ +  +  G   LL        R+  V+ +         CGGTHV +T EI  L + 
Sbjct: 183 RTMSVKPPMGLGRVRLL--------RIAGVDLQP--------CGGTHVRNTSEIGDLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRV 238


>gi|17546296|ref|NP_519698.1| threonyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|22654118|sp|Q8XZ29|SYT_RALSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17428593|emb|CAD15279.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 635

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + +R+DA+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWSRDDAVKLFEG--MGEKYKAEIIASIPEDQEIGLYREGNFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|300711786|ref|YP_003737600.1| Alanyl-tRNA synthetase, class IIc-like protein [Halalkalicoccus
           jeotgali B3]
 gi|299125469|gb|ADJ15808.1| Alanyl-tRNA synthetase, class IIc-like protein [Halalkalicoccus
           jeotgali B3]
          Length = 255

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 92/234 (39%), Gaps = 23/234 (9%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G    VV D T FY E GGQ  D G A+       + DV+K  E   ++H +   G    
Sbjct: 26  GDAARVVLDATHFYPEGGGQPADRG-ALSGSENWPVRDVRKTDE---IYHTVEGEGPTVG 81

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E  +V  ID ++R      H+A HLL   L  +        G+ +  D  R D  + +  
Sbjct: 82  E-RVVGEIDREHRAAHMQYHTAQHLLSAVL--LEEYDAPTTGNQLYADHARLDCAYER-F 137

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSVEYED 685
           T  +L ++E  +N+++   + V    + RE A          L         +  VE  D
Sbjct: 138 TDEDLDALETRMNELVGAAMDVRWYTLGRERAQTELDPERTRLDLLPESITEIRIVEIGD 197

Query: 686 G-------------GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           G              V     C GTHVS+T EI  + +    +  +   R+E +
Sbjct: 198 GIGSTPNGEPSGPSTVFDRVACAGTHVSNTAEIGRVEVTGRRTQGSDEERVEFV 251


>gi|212638370|ref|YP_002314890.1| threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|226701399|sp|B7GGN9|SYT_ANOFW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212559850|gb|ACJ32905.1| Threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 643

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+   L   V      +  +G  +D+    PIT+ +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAVKR-LYKDVKLGVGPVIENGFYYDIDVDVPITAEDLPKIEQEMKKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAA---ALLGTKYND--RVRVVSVEYEDGGVHSSALCGGTHV 699
           +NL +V + ++RE+AI         L     ND     VVS+ YE G      LC G HV
Sbjct: 133 ENLDIVRKEVSREEAIRRYEEIGDPLKIELINDIPEGEVVSI-YEQGEFFD--LCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I    ++S
Sbjct: 190 PSTGKIKEFKLLS 202


>gi|57525832|ref|NP_001003572.1| alanyl-tRNA editing protein Aarsd1 [Danio rerio]
 gi|82182671|sp|Q6DEJ5|AASD1_DANRE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|50417382|gb|AAH77118.1| Alanyl-tRNA synthetase domain containing 1 [Danio rerio]
          Length = 412

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 109/260 (41%), Gaps = 17/260 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V    T  + E GGQ  D G  IG    L++  +++  + +    + +E G       + 
Sbjct: 42  VKLKDTILFPEGGGQPDDHG-TIGGVPVLRV--LRQGPDAVHFVSSALEEG-----QEVH 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D++ R      HS  HL+     T+ G   +          +  D    KP    E+
Sbjct: 94  IKLDWERRFDHMQQHSGQHLITALADTMFGYKTTSWDLGRQRSSIELDTATVKP---GEM 150

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +++E  VN+ I  ++PV   +++ +D A+    +  L   +   +R++ +E  D     +
Sbjct: 151 EALETAVNEKIRAHVPVTVNLLSIDDPAVEKVRSRGLPDDHAGPIRIIDIEGVD-----A 205

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHVS+   + ++ I+     +     +  I G R   +        KSL   LK 
Sbjct: 206 NMCCGTHVSNLSHLQVIKILGTEKGKKNKTNLIFIAGNRVLKYAEKSYNIEKSLTVLLKT 265

Query: 752 SQGNVVGRVEEIWEEYRKLQ 771
                V  V+++ +  ++LQ
Sbjct: 266 GADEHVDAVDKLQKTVKRLQ 285


>gi|83774170|dbj|BAE64295.1| unnamed protein product [Aspergillus oryzae]
          Length = 270

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 49/249 (19%)

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           VL  +P   LT    S+ K            V+ +   +   +T FY + GGQ  DTG  
Sbjct: 24  VLSCQPISQLTENEKSLAKT-----------VAPESFALTTRETVFYPQGGGQPSDTGVI 72

Query: 535 I----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSA 589
                 +G   ++  V+K  +G  +H          T+  LV   ID+  R   S  H+A
Sbjct: 73  TLADKSNGSTFKVLLVRKTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTA 132

Query: 590 THLLHHA---LSTILG------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            H++  A   L+ +LG      ++ +   +C+  +GL +  T  K +       IED VN
Sbjct: 133 GHIIGLAMRLLAPVLGERKKVKANHAPGQACMEFEGLLY--TEHKSV-------IEDKVN 183

Query: 641 DIIAQNLPVVT------RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +++   LPV T      RI N +  +  G    L    N + R+  +    G + ++  C
Sbjct: 184 ELVGMKLPVTTEWWDEDRIQNADLNMVEG----LQLGKNGQARIAMI----GDIDANP-C 234

Query: 695 GGTHVSSTG 703
           GGTHV  TG
Sbjct: 235 GGTHVEHTG 243


>gi|302346650|ref|YP_003814948.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302150421|gb|ADK96682.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 155

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++  N+ +    H+A HLL+  +  + G+  S N            +   KP    E K+
Sbjct: 5   LNSHNKEEFPPAHTAEHLLNQVMIRMFGTERSNNAHIERKKSKMTFILDHKPDRKEE-KA 63

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IED +N +IA++LPV   +++R +         L    ++ +R+V +     G     LC
Sbjct: 64  IEDEMNRLIAEDLPVTFEMVDRNNIPEGVTVDRLPEDASEMLRLVRI-----GDFDICLC 118

Query: 695 GGTHVSSTGEI 705
            G HV ST +I
Sbjct: 119 IGKHVRSTAQI 129


>gi|206889512|ref|YP_002249047.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741450|gb|ACI20507.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 617

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++ HA+  +        G  I  DG  +D     P T  +L+ IE  +++II 
Sbjct: 52  LRHSVAHIMAHAVKDLFPDVKVTIGPAIE-DGFYYDFDRDTPFTEEDLQKIEKRMHEIIK 110

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV------VSVEYEDGGVHSSALCGGTH 698
              P + + +++++AI    +  LG  Y   +        VS+ YE+GG     LC G H
Sbjct: 111 SRQPFIRKEISKDEAIKLFES--LGESYKIEIINEIEDEKVSI-YEEGGFID--LCRGPH 165

Query: 699 VSSTGEIMLLYIVS 712
           +  TG +    ++S
Sbjct: 166 IPHTGIVKAFKLLS 179


>gi|238498766|ref|XP_002380618.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220693892|gb|EED50237.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 267

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 49/249 (19%)

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-- 532
           VL  +P   LT    S+ K            V+ +   +   +T FY + GGQ  DTG  
Sbjct: 21  VLSCQPISQLTESEKSLAKT-----------VAPESFALATRETVFYPQGGGQPSDTGVI 69

Query: 533 --CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSA 589
                 +G   ++  V+K  +G  +H          T+  LV   ID+  R   S  H+A
Sbjct: 70  TLADTSNGSTFKVLLVRKTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTA 129

Query: 590 THLLHHA---LSTILG------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            H++  A   L+ +LG      ++ +   +C+  +GL +  T  K +       IED VN
Sbjct: 130 GHIIGLAMRLLAPVLGERKKVKANHAPGQACMEFEGLLY--TEHKSV-------IEDKVN 180

Query: 641 DIIAQNLPVVT------RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +++   LPV T      RI N +  +  G    L    N + R+  +    G + ++  C
Sbjct: 181 ELVGMKLPVTTEWWDEDRIHNADLNMVEG----LQLGKNGQARIAMI----GDIDANP-C 231

Query: 695 GGTHVSSTG 703
           GGTHV  TG
Sbjct: 232 GGTHVEHTG 240


>gi|288959315|ref|YP_003449656.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911623|dbj|BAI73112.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 650

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I H A H+L  A+  +  G+ V+   S  T  G  +D    +P T  +L+ IE  + +++
Sbjct: 74  IRHDAAHVLADAVQKLYPGTQVTIGPSIAT--GFYYDFARDEPFTPEDLEKIEAKMRELV 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHV 699
           A ++P++  + +R++AIA      LG  Y   +     + E   V+       LC G H 
Sbjct: 132 AADIPILREVWDRDEAIAYFKK--LGEHYKAELIETIPQGEPVSVYRQGDWLDLCRGPHA 189

Query: 700 SSTGEI 705
            +TG++
Sbjct: 190 MTTGKV 195


>gi|265764262|ref|ZP_06092830.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|263256870|gb|EEZ28216.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
          Length = 154

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+++    H+A HLL+  +    G   S+N   I     + D       T  ++ +IE+
Sbjct: 10  HNKQEYPPMHTAEHLLNATMVKTFGCPRSRNAH-IEKKKSKCDYELPTCPTEEQIHAIEE 68

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I ++LPV    M  E+A +    + L    ++ +R+V +     G + +  C G 
Sbjct: 69  KVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASETLRIVRI-----GDYDACACIGQ 123

Query: 698 HVSSTGEIMLLYIVS 712
           HV +T EI L  I+S
Sbjct: 124 HVENTSEIGLFKIIS 138


>gi|297736873|emb|CBI26074.3| unnamed protein product [Vitis vinifera]
          Length = 243

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++ D T F+ + GGQ  DTG  AI +  I+  + DV+ K +G+  H+  +E      E  
Sbjct: 23  LILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRSK-DGVVFHYGFIENSNEELESK 81

Query: 571 L------VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L       L +D   R+  S  HSA HLL   + T+   ++        PDG   +    
Sbjct: 82  LEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLGNLEPGKGYHFPDGPFVEYKGV 141

Query: 625 KPIT--SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL---LGTKYNDRVRVV 679
            P      + K +E + N +I++   V   ++   +A+      L   +    N R+  +
Sbjct: 142 VPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVELCGGCLPDYIPKSSNPRILKL 201

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                  G +    CGGTHVS   EI+ +  V++   + G+ ++    G
Sbjct: 202 -------GDNPGCPCGGTHVSDISEIISVK-VTQIRTKKGVTKVYYTIG 242


>gi|116335011|ref|YP_802506.1| putative alanyl-tRNA synthetase [Candidatus Carsonella ruddii PV]
 gi|116235292|dbj|BAF35140.1| putative alanyl-tRNA synthetase [Candidatus Carsonella ruddii PV]
          Length = 328

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 37/231 (16%)

Query: 12  LEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA---VTTVQKCV 68
           L FF    +++L + + I   + TL+F NSG+   K       K V+++   +++ Q CV
Sbjct: 5   LLFFSFYYYKILGTQN-INSTNKTLIFVNSGLASLK-------KFVFRSNVEISSFQYCV 56

Query: 69  RAGGKHNDLDNVGRTNR--HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           R  G +ND      TN   H T F MLGNF+                L K   L+ ++L+
Sbjct: 57  RMQGIYNDFK---LTNDGIHQTSFLMLGNFTKKNNINNFKKIKKILFLIK---LNFKKLF 110

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            T+   D     L   +       I    TN N W + + G CG   EI+          
Sbjct: 111 FTININDYLNIILILILKININQVIF---TNKNIWKINKNGYCGFSLEIY---------- 157

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                +  ++ +EIWN+V + F ++ K+ +  L K  IDTG+GL R+  V 
Sbjct: 158 ----IKISKKLLEIWNIVNVSFIKKKKKIK-FLKKKIIDTGLGLNRIIYVF 203


>gi|172061237|ref|YP_001808889.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MC40-6]
 gi|171993754|gb|ACB64673.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MC40-6]
          Length = 243

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 99/252 (39%), Gaps = 46/252 (18%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAE 551
           A + Q + V  AV    + +  D+T FY   GGQ GD+G   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDGIRL--DRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+Q R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLPYPV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKS------------IEDNVNDIIAQNLPVVT 651
               +G  +T D +R D   S  I  A+++               + + D      P + 
Sbjct: 127 ----DGCSVTADYVRLDFATSDAIDRADVERRLAELVSGAHAVTTEWITDAEMTERPELV 182

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M+ +  +  G   LL        R+  V+ +         CGGTHV +T EI  L + 
Sbjct: 183 RTMSVKPPMGLGRVRLL--------RIAGVDLQP--------CGGTHVRNTSEIGDLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRV 238


>gi|114570943|ref|YP_757623.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Maricaulis
           maris MCS10]
 gi|122315357|sp|Q0AM08|SYT_MARMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114341405|gb|ABI66685.1| Ser-tRNA(Thr) hydrolase [Maricaulis maris MCS10]
          Length = 644

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  DG  +D   S+P T  + ++IE  + +I+ 
Sbjct: 71  IRHDTAHILAQAVQDLFPGTQVTIGPAIE-DGFYYDFARSEPFTPEDFEAIEKRMGEIVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            +LP    + +R DAIA      +G  Y   +     E E   ++       LC G H+ 
Sbjct: 130 ADLPFEREVWDRNDAIAKFEE--MGEAYKAELIRDLPEDETITIYRQGEWFDLCLGPHLP 187

Query: 701 STGEI 705
           STG+I
Sbjct: 188 STGKI 192


>gi|251798759|ref|YP_003013490.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247546385|gb|ACT03404.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 645

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 19/137 (13%)

Query: 587 HSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  HL+  A+  + G ++V      +  DG  +D+   + +T  +L  IE  +  I+ +
Sbjct: 74  HSTAHLMAQAIKRLYGNANVKLGIGPVIEDGFYYDIDMEQSLTPEDLTKIEKEMQRIVNE 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALCG 695
           NL +  R+++R++A+A      + T+ +D +++          V   Y+ G      LC 
Sbjct: 134 NLDIRRRVVSRDEALA------IFTELDDNLKLELIRDLPEDSVITMYDQGEFFD--LCR 185

Query: 696 GTHVSSTGEIMLLYIVS 712
           G H+ STG I    ++S
Sbjct: 186 GPHLPSTGRIKAFKLLS 202


>gi|134296462|ref|YP_001120197.1| metal-dependent hydrolase-like protein [Burkholderia vietnamiensis
           G4]
 gi|134139619|gb|ABO55362.1| Ala-tRNA(Pro) hydrolase [Burkholderia vietnamiensis G4]
          Length = 243

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 99/252 (39%), Gaps = 46/252 (18%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A + + E V  AV    + +  D+T FY   GGQ GD G   + DG  + I D  K + +
Sbjct: 11  AYLTRCEAVVAAVGDDGIRL--DRTVFYPLGGGQAGDAGTLTLPDGGTIAIADTHKARFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             LR    +V  ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQEARIAALRPGARVVADIDWARRYRHMRLHTAAHLMCAVLPYPV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKS------------IEDNVNDIIAQNLPVVT 651
               +G  +T D +R D   S  I  A+++               + + D      P + 
Sbjct: 127 ----DGCSVTADYVRLDFATSDAIERADVEQRLAALVHGAHAVTTEWITDAEMAERPELV 182

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M+ +  +  G           RVR++ +E    GV     CGGTHV +T E+  L + 
Sbjct: 183 RTMSVKPPMGLG-----------RVRLLRIE----GVDLQP-CGGTHVRNTAEVGALRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRV 238


>gi|313673284|ref|YP_004051395.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940040|gb|ADR19232.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 640

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I  DG  +D     P    +L+ IE  + DI  
Sbjct: 70  LRHSTAHLMAQAVQRLFKDVKVTIGPTIQ-DGFYYDFDIDTPFKEEDLEKIEQVMADIAR 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           Q+LP++ + + +EDAI   +   +G  Y  +V +++   ED   V+S      LC G H+
Sbjct: 129 QDLPIIRKELTKEDAIKLFSE--MGETY--KVEIINDLGEDVVSVYSQGDFVDLCRGPHL 184

Query: 700 SSTGEIMLLYIVS 712
            STG I    ++S
Sbjct: 185 PSTGFIKHFKLLS 197


>gi|227498537|ref|ZP_03928681.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903993|gb|EEH89911.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 636

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H+A+H++  A+  +        G  I   G  +D+      T  +LK+IE  +  I+
Sbjct: 72  AIRHTASHVMAQAIQHLFPGTKFAIGPAIE-KGFYYDLDSEHVFTPDDLKAIEKEMAKIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSA------LCG 695
            QNLPVV   + R +A+A   A       N+  +V  +E   ED  + + +      LC 
Sbjct: 131 KQNLPVVRHEIPRAEALAKFKAE------NEPYKVELIEDLPEDAVISTYSQGDFTDLCA 184

Query: 696 GTHVSSTGEIMLLYIVS 712
           G H  STG +    ++S
Sbjct: 185 GPHCPSTGRVKAFKLMS 201


>gi|291549913|emb|CBL26175.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Ruminococcus torques L2-14]
          Length = 404

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 155/383 (40%), Gaps = 66/383 (17%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  D+T F+ E GGQ  DTG  + D    +++DV +K  G  +H  I ++     E+ + 
Sbjct: 44  VELDRTAFFPEGGGQYADTG-KLKDA---KVSDVWEK-NGRILH--ITDQPFEAGEI-VE 95

Query: 573 LTIDYQNRRQLSINHSATHLLH---HALSTI--LGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ID++ R      H+  H++    HA      +G H+      +  DG          I
Sbjct: 96  GEIDWKTRFMKMQQHTGEHIVSGIVHARYGFNNVGFHLGTEDCTMDFDG---------EI 146

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           +   L+ IE   N  + +NL +     ++E+       + +  +   +VR+VSV     G
Sbjct: 147 SKEALQEIELEANRAVWKNLTIEVSYPSKEELEELDYRSKI--EIEGQVRIVSVP----G 200

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
               A C   HV  TGEI ++ +V+    + G+ R+  + G RA +    + E+ + +++
Sbjct: 201 YDICACC-APHVERTGEIGMIKLVNMQRYKGGV-RVTMLCGSRALTDYEKKQEQNRKISA 258

Query: 748 FLKVSQGNVVGRVEEIWEEYRKL---------QLIHAKRKLQLNVEDLSCHKIADV--NF 796
            L   +      V  + EE   L         QL+H   +     E   C    D+  + 
Sbjct: 259 LLCAKEYETAEAVGHLKEEMDSLKRTLVEKERQLVHIWAQSVPEEEKTVCMFSEDISADA 318

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           M   ++EV  KE + +         +G   ++G             T+DL          
Sbjct: 319 MRQYVNEVLEKE-RILCAVFYGNDAAGYRYVIGSR-----------TQDL---------- 356

Query: 857 RLSAKVLGG---GGGGGRPHMAQ 876
           R  +K+L     G GGG+P M Q
Sbjct: 357 RAFSKMLNAAFEGRGGGKPEMVQ 379


>gi|282850470|ref|ZP_06259849.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579963|gb|EFB85367.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 636

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 72  TLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHTLTPEDLGKIEKEMSRIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M R++AI          K  D +V ++    ED  +   +      LC G
Sbjct: 131 KENLPITKSVMPRQEAI-----DFFKAKNEDYKVELIQDLPEDAVISCYSQGDFIDLCAG 185

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 186 PHVASTGKV 194


>gi|328957059|ref|YP_004374445.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673383|gb|AEB29429.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 645

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D+++  Q+ + HS  HL+ +AL  +        G  I+  G  +D     PIT  +
Sbjct: 61  IITPDHEDALQI-LRHSTAHLMANALRRLYPDIKFGVGPAIS-TGFYYDTDSEAPITDED 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE  +  I+ +N P+V + + RE+A+           Y   +     E E   V+  
Sbjct: 119 IPKIEAEMMAIVKENNPIVRKEVTREEAL----EIFKDDPYKVELITALPESEKITVYDQ 174

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG I +  ++S
Sbjct: 175 GDFVDLCRGVHVPSTGRIQVFKLLS 199


>gi|229581785|ref|YP_002840184.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012501|gb|ACP48262.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.N.15.51]
          Length = 236

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 12/202 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GG   DTG  I + G ++ + +  K+ E   + H I +   L     +
Sbjct: 27  VMLDKTSFYPGGGGLENDTGFLINERGEKINVIEA-KRGENGEILHKIDQNASLNVGDKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  + D       T  E
Sbjct: 86  IGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQAKDDFNVENKDTLIE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L    +  N+I+ + + +    + RE+A+   A   L  +   ++ +  +  E  G+   
Sbjct: 144 LI---NEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPIWRI-VEIPGIDIQ 199

Query: 692 ALCGGTHVSST---GEIMLLYI 710
           A  GG HV++T   GEI+LL +
Sbjct: 200 A-DGGPHVNNTKEIGEIVLLKV 220


>gi|321475975|gb|EFX86936.1| hypothetical protein DAPPUDRAFT_312382 [Daphnia pulex]
          Length = 403

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 169/432 (39%), Gaps = 86/432 (19%)

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDT 531
           CQK P       S +V     Q   +E  V G+K      EV+ + T F+ E GGQ  D 
Sbjct: 5   CQKSPYK-KEFTSKVVSCSPCQ---IERLVQGKKEKVQVFEVLLEDTVFFPEGGGQPDDR 60

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  + LQ+   ++  + I      ++ G L T +     ID++ R      HS  H
Sbjct: 61  GFLNGIPV-LQVK--RRGKDAIHFLQDSLDVGTLATGV-----IDWERRWDHMQQHSGQH 112

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           ++        G   +      +   +  D  +   +T A+LK+IE  VN+ I + + V  
Sbjct: 113 VITAIADASFGFKTTSWWLGESVSHIELDTVN---VTDAQLKTIESQVNEKIREAVSVEV 169

Query: 652 RIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++    DAI     +  L   +   VRVV++   D     S +C GTHVS+   +  + +
Sbjct: 170 KVY-EGDAIPDQVRSRGLPDDHVGPVRVVTILGVD-----SNMCCGTHVSNLSHLQFIKL 223

Query: 711 VSESSIRAGIRRIEAITGQRARSHL---MGQDEKL---------------KSLASFLKVS 752
           +     +     +  I+G R   ++   + ++ +L                 L + +K+S
Sbjct: 224 LYTEKGKKNKTNLFFISGNRVLDYINRSLDRERQLTKILKNGPEDHVDLANKLQALVKLS 283

Query: 753 QGNV--------VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           Q  +        V + E+I  E  K  ++H K                D ++ S +ISE+
Sbjct: 284 QKTLQTLMKELAVVQAEKIKSEKPKFAIVHRKD--------------GDADYASALISEL 329

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
            S+                I +L+ + ++    + ++  ED++         ++ + + G
Sbjct: 330 ASE---------------AITLLITVGEDNNGQMTLIGQEDVVSSLG----PKICSCLAG 370

Query: 865 GGGGGGRPHMAQ 876
            G G G    A+
Sbjct: 371 KGAGKGNKFQAK 382


>gi|315282482|ref|ZP_07870886.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613866|gb|EFR87606.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 640

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKFNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G  Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDHYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|288574772|ref|ZP_06393129.1| Threonyl/alanyl tRNA synthetase SAD [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570513|gb|EFC92070.1| Threonyl/alanyl tRNA synthetase SAD [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 397

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 14/210 (6%)

Query: 508 GQKVEVVFDQTPF-YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           G+K  V+ D   F + E GGQ GD+G    D     I + +K  +G+ V    ++ G LR
Sbjct: 22  GKKASVLIDGDHFLHPEGGGQPGDSGVFSSDNCDGFILNTRKDEDGLCVLDLKLKSGELR 81

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI---LGSHVSQNGSCITPDGLRFDVTH 623
               L +  D      LS  HS  H+L   +  +   L  +    G   T   +R+D   
Sbjct: 82  EGDLLKIERDDVRHSVLSRMHSGEHVLSRIMEDMRPGLSVYKVAVGEERTGIYMRYD--- 138

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE 682
              +    L   ED    ++  +LPV T ++  E+A    G  A      +D +RVV + 
Sbjct: 139 -GDLDWDFLFEAEDRARGVVRSSLPVETLVLPIEEAKRLDGLKARWDRVSDDSIRVVRIP 197

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             D        C G+HV +T EI  L++ S
Sbjct: 198 DFD-----LIACSGSHVENTSEIGTLFVES 222


>gi|293610405|ref|ZP_06692706.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|292827637|gb|EFF86001.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|325124561|gb|ADY84084.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 640

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  VV ++  R++ IA   A   G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E    G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|269798232|ref|YP_003312132.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094861|gb|ACZ24852.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 636

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D+     +T  +L  IE  ++ I+
Sbjct: 72  TLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDIDMEHILTPEDLGKIEKEMSRIV 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA------LCGG 696
            +NLP+   +M R++AI          K  D +V ++    ED  +   +      LC G
Sbjct: 131 KENLPITKSVMPRQEAI-----EFFKAKNEDYKVELIQDLPEDAVISCYSQGDFIDLCAG 185

Query: 697 THVSSTGEI 705
            HV+STG++
Sbjct: 186 PHVASTGKV 194


>gi|328912917|gb|AEB64513.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 653

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I        G  I  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 84  MRHSTAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMEQALTPDDLPKIEKEMKRIVG 142

Query: 645 QNLPVVTRIMNREDAIASGAA-------ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           +NLP++ + ++R++A +  A         LL     D    VS+ YE G      LC G 
Sbjct: 143 ENLPIIRKEVSRDEAKSMFAEIGDNLKLELLDAIPED--ETVSI-YEQGEFFD--LCRGV 197

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG+I    ++S
Sbjct: 198 HVPSTGKIKEFKLLS 212


>gi|193211793|ref|YP_001997746.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085270|gb|ACF10546.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 661

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 21/179 (11%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + R     ++T D    +++   HS++HL+ HA+  +        G  I   G  +D+  
Sbjct: 64  VTRDAAVSIVTFDSPEGKEI-FWHSSSHLMAHAIEELFPGAKFGAGPAIE-QGFYYDIAC 121

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYNDR 675
                  +L++IE  + +I  +NL +    M RE AI   A          +L     + 
Sbjct: 122 EHRFNEDDLRAIEAKMLEISQRNLSITREEMPREQAIEYFANERKDPYKVEILEDTLKE- 180

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEI--MLLYIVSES-----SIRAGIRRIEAIT 727
           V  VSV Y+DG    + LC G H+ STG++  +LL  +S S     S R  ++RI  IT
Sbjct: 181 VPTVSVYYQDG---FADLCSGPHLPSTGKVKAVLLTNISSSYWRGDSSRETMQRIYGIT 236


>gi|308513249|ref|YP_003474861.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|307346955|gb|ADC90325.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 646

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  R  +  H+A+H+L  A+  +        G  I  +G  +D     P    E
Sbjct: 58  ILTFDDEGGRH-AFRHTASHILAQAVKRLYPDTKLAIGPAIE-NGFYYDFDRDHPFNDEE 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDG 686
           L+++E  +  I+ +NLP+ + ++ R++AIA       G  Y     ND     ++ + + 
Sbjct: 116 LRALEAEMKKIVKENLPIKSFLLPRDEAIALMEKR--GEPYKVELINDLPADAALSFYEQ 173

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
           G     LC G H++ST  +    + S
Sbjct: 174 GEFVD-LCAGPHLASTKPVKAFKLTS 198


>gi|255261320|ref|ZP_05340662.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255103655|gb|EET46329.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 239

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 25/232 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MSL 571
           +V DQT FY   GGQ GD+G    D   ++I     K EG  +     E   L  E +++
Sbjct: 28  IVLDQTIFYPTGGGQPGDSGRLTWDEGAIEIA-TTIKGEGTDIVLVPAEPSALPPEGVAV 86

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D+  R +    H+A HL    LS ++   V+  G  I  +  R D   + P+    
Sbjct: 87  KQELDWDRRHRHMRVHTALHL----LSVVIPLPVT--GGQIGAEKGRLDF--NMPVALEN 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDGG 687
              IE+ +N +IA + PV T  ++  +  A+       ++   +    +R+V +   D  
Sbjct: 139 KDEIEETLNKLIACDFPVTTESISEVELDANPGLVKTMSVQPPRGTGHIRLVRIGEGD-N 197

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           +     CGGTHV+ T EI          +R G  ++E    Q  R HL  +D
Sbjct: 198 MADLQPCGGTHVAHTIEI--------GRVRLG--KVENKGKQNRRVHLHLED 239


>gi|291279885|ref|YP_003496720.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754587|dbj|BAI80964.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 640

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I  DG  +D     P T  +L+ IE+ +  I  
Sbjct: 70  LRHSTAHLMAQAVQRLFKDVKVTIGPVIE-DGFYYDFDKETPFTETDLEKIEEEMKKIAQ 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVS-VEYEDGGVHSSA----LCGGTH 698
           +NLP+  + + +E+AI      L   K  D ++ +++ ++ E   V+       LC G H
Sbjct: 129 ENLPIRRKELKKEEAI-----KLFKDKGEDYKIEIINEIDDEYVSVYEQGEFVDLCRGPH 183

Query: 699 VSSTGEIMLLYIVS 712
           + STG+I    ++S
Sbjct: 184 LESTGKIKHFKLLS 197


>gi|124028073|ref|YP_001013393.1| metal-dependent hydrolase [Hyperthermus butylicus DSM 5456]
 gi|123978767|gb|ABM81048.1| predicted metal-dependent hydrolase [Hyperthermus butylicus DSM
           5456]
          Length = 241

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 13/208 (6%)

Query: 513 VVFDQTPFYAEAGGQL-GDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V  + T F+    G L  D G  I  DG  L++ DV  + EG   H    +   L   M 
Sbjct: 28  VFLEATAFHPRPSGGLDADHGILILPDGSELRVVDVVMR-EGDVAHIVDGDLSKLHPGMR 86

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID++ R Q+   H+A+H+L   L    G+ V+  G  ITP+  R D+  +     +
Sbjct: 87  VHGVIDWERRYQMMKLHTASHILLAVLYNKYGARVT--GGHITPETARDDLEINVDDWKS 144

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGG 687
            ++   +  N II + + V    + RE+A+       L  K     +++R+V +     G
Sbjct: 145 AVRQAVEEANQIIRRCIEVKVYWLPREEALRIPGIVKLADKLPPDVEKLRIVEIP----G 200

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           V   A  GG HV +T EI  + IV   S
Sbjct: 201 VDIQA-DGGPHVRNTCEIPGIKIVKLES 227


>gi|255582427|ref|XP_002532001.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223528332|gb|EEF30374.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 658

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  + + L I H+  H++  A+  +        G  I  +G  +D    +P+T  
Sbjct: 92  IVLPTNESSEKLLRIRHTCAHVMAMAVQKVYPEAKVTIGPWIE-NGFYYDFD-MEPLTDK 149

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGV 688
           +LK I+  ++ II QNLP+V   ++RE+A     A     K    D ++   +     G 
Sbjct: 150 DLKRIKKEMDRIIGQNLPLVREEVSREEAQKRIMAVNEPYKMEILDSIKEDPITIYHIGD 209

Query: 689 HSSALCGGTHVSSTGEI 705
               LC G HV STG I
Sbjct: 210 EWWDLCAGPHVESTGNI 226


>gi|148653933|ref|YP_001281026.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048584|sp|A5WHD5|SYT_PSYWF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148573017|gb|ABQ95076.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 644

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  +V      +  DG  +D+   KP T  ++ +IE  + ++I 
Sbjct: 71  IRHSTAHLLGHAVKQ-LYPNVKMVIGPVIEDGFYYDIFSEKPFTPEDMAAIEKRMAELIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           QN  V+ ++  RE+AI        G  Y  ++     E ++ G++       +C G HV 
Sbjct: 130 QNYDVIKKMTPREEAIKIFEER--GEDYKLKLIADMPEEKELGLYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|308174589|ref|YP_003921294.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607453|emb|CBI43824.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328554512|gb|AEB25004.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 643

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I        G  I  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMEQALTPDDLPKIEKEMKRIVG 132

Query: 645 QNLPVVTRIMNREDAIASGAA-------ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           +NLP++ + ++R++A +  A         LL     D    VS+ YE G      LC G 
Sbjct: 133 ENLPIIRKEVSRDEAKSMFAEIGDNLKLELLDAIPED--ETVSI-YEQGEFFD--LCRGV 187

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG+I    ++S
Sbjct: 188 HVPSTGKIKEFKLLS 202


>gi|18543305|ref|NP_570062.1| CG10802 [Drosophila melanogaster]
 gi|17862184|gb|AAL39569.1| LD13611p [Drosophila melanogaster]
 gi|22831622|gb|AAF45874.2| CG10802 [Drosophila melanogaster]
 gi|220943032|gb|ACL84059.1| CG10802-PA [synthetic construct]
          Length = 436

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 35/268 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  ++
Sbjct: 43  VICEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GSTAVHFVESPTSFEQDAEVL 96

Query: 573 LTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           LT+DYQ R      HS  HL+         +   S  LGS VS          ++    H
Sbjct: 97  LTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSTVSY---------IQLSTPH 147

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVS 680
              I+   L  IE   ND+I +   V   +++ E A     + A   L   +    RVV 
Sbjct: 148 L--ISRESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVR 205

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E    G+ S+ +C GTHV++  ++  + ++    ++A +  +  + G+R    L    +
Sbjct: 206 IE----GIESN-MCCGTHVTNLSQLQCIKLLYAEKVKANV-LVHFVVGERVLVKLGEVFQ 259

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           + + L   LK   G  +  V+++ +  +
Sbjct: 260 REQQLTQALKGGPGQHLELVQKLQQNVK 287


>gi|328951014|ref|YP_004368349.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451338|gb|AEB12239.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 647

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 15/144 (10%)

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNG----------SCITPDGLRFDVTHSKPIT 628
            R+     H   H L H L+  +     + G            +  +G  +D+   +PI+
Sbjct: 61  TRKDPEYQHLFRHTLAHVLAQAVKEFFQEKGYDPDAVKLGVGPVIENGFYYDIDAPEPIS 120

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVE-YED 685
            ++L +IE  ++ I+ +NLP+   +++RE+A+A   G          D      +  YE 
Sbjct: 121 DSDLPAIEKRMHHILKRNLPLRRYVLSREEALARYRGKDPYKTELIQDLPEDEEISFYEQ 180

Query: 686 GGVHSSALCGGTHVSSTGEIMLLY 709
            G   + LC G HV STG+I   +
Sbjct: 181 EGF--TDLCRGPHVPSTGKIPPFF 202


>gi|257095791|ref|YP_003169432.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048315|gb|ACV37503.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 641

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  +  S     G  I  DG  +D    +P T  +L  IE  + ++ A
Sbjct: 71  LRHSCAHLLAMAVKQLYPSAQVTIGPVIE-DGFFYDFAFERPFTPDDLVEIEARMQELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            +LP+  R + R+ A+A      LG  Y   +     E E   +++      LC G HV 
Sbjct: 130 ADLPLGRRELPRDQAVAYFEQ--LGESYKAELIRAIPEGETLSLYAQGDFADLCRGPHVP 187

Query: 701 STGEI 705
           STG +
Sbjct: 188 STGRL 192


>gi|159041822|ref|YP_001541074.1| threonyl/alanyl tRNA synthetase SAD [Caldivirga maquilingensis
           IC-167]
 gi|157920657|gb|ABW02084.1| Threonyl/alanyl tRNA synthetase SAD [Caldivirga maquilingensis
           IC-167]
          Length = 242

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 16/213 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+  + ++     V+ D+T  +  +GG + DTG  I  G + +I D   K +   V H +
Sbjct: 15  EVDAKVIAVDGSNVILDKTIIHPSSGGVVHDTGLIITKGEQYRIIDAVHKRDTDDVIHVL 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L+    + + +D+  R +L   H+A+H++     +   + V+  G  I PD  R 
Sbjct: 75  DRSPQLKYGDDVKVVLDWDRRYRLMRLHTASHIMAGIAYSKYNALVT--GGDIQPDYARD 132

Query: 620 DVTHSKPITSAELKSIEDNV----NDIIAQNLPVVTRIMNREDAIASGAAALLGTKY--- 672
           D  +S      EL+ I + +    N+I+ + + V    M RE+A+       L  +    
Sbjct: 133 D--YSLTAGGEELRRIFNEIVTEANEIVKKGIEVKVYWMPREEALKVPGIVKLAEREPPP 190

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            D+ R+V +     GV   A  GG HV++T EI
Sbjct: 191 GDKWRIVEIP----GVDVQA-DGGPHVANTREI 218


>gi|146304928|ref|YP_001192244.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
 gi|145703178|gb|ABP96320.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
          Length = 235

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 17/215 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T F+   GG   DTG  I  G   ++T+V  K EG  + H + +   LR    + 
Sbjct: 28  VILDRTAFHPRGGGLESDTGALILGGNTYRVTEV--KFEGNEIVHVLEKLDGLREGDEVE 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAE 631
             ID++ R ++   H+A+H++     +   + ++  G  ITP+  + D    +K +    
Sbjct: 86  GRIDWERRYRMMRLHTASHIIASIAFSKYNALIT--GGNITPEYAKDDFNVENKDL---- 139

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGV 688
           L  I +  N+I  + + V    + RE+A+       L  K    +   R+V +E    G+
Sbjct: 140 LPKIVEEANEIAKRGIKVKVYFLPREEAMKIPGVVKLAEKMPPELETWRIVEIE----GI 195

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              A  GG HVS+T EI  + ++   +   G +R+
Sbjct: 196 DIQA-DGGPHVSNTEEIGSIEVIKVENRGKGKKRL 229


>gi|299771535|ref|YP_003733561.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701623|gb|ADI92188.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 640

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  VV ++  R++ IA   A   G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E    G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|322383766|ref|ZP_08057517.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151978|gb|EFX44921.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 649

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 25/199 (12%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G  +G+   +I  G++ Q   V  K +G  V    + R I       + T+D +   ++ 
Sbjct: 17  GTTVGEVAASISSGLKKQA--VAGKMDGQPVD---LSRPIEYNAAVEIWTLDSEEGLEV- 70

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             HS  HL+  AL  I G    + G   +   G  +D+     +T  +L  IE  +  II
Sbjct: 71  YRHSTAHLMAQALKRIYGEKAVKLGIGPVIEGGFYYDIDMETSLTPEDLGKIEKEMEKII 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
            ++LP+  R++++E+AI       +  +  D +++  +           Y+ G      L
Sbjct: 131 KEDLPITRRVVSKEEAIR------IYEEIEDPLKLELIHEFPEDATITIYDQGEFFD--L 182

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G H+ STG I    ++S
Sbjct: 183 CRGPHLPSTGRIKAFKLLS 201


>gi|119485182|ref|ZP_01619567.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457410|gb|EAW38535.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 608

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II 
Sbjct: 30  IRHTASHIMAMAVQKLFPKAQVTIGPWIE-NGFYYDFDSPEPFTEKDLKAIQKEMAKIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-----RVVSVEYEDGGVHSSALCGGTHV 699
           + LPVV   ++RE+  A      LG  Y   +       +++ Y   G     LC G HV
Sbjct: 89  RKLPVVREELSREE--AKRRIEELGEPYKLEILEGLEDPITIYYLGDGWWD--LCAGPHV 144

Query: 700 SSTGEI 705
            +T +I
Sbjct: 145 ENTADI 150


>gi|224499783|ref|ZP_03668132.1| threonyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 640

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D+++   + + HS  HL+  AL  +        G  I   G  +D+     I+   
Sbjct: 58  IVTPDHEDALGI-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDES 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  IE  +  I+ +N+P+   +++RE+AI    A  +G +Y   +     E E   +++ 
Sbjct: 116 LVEIEKEMQKIVRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQ 173

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG+I +  ++S
Sbjct: 174 GEFFDLCRGVHVPSTGKIQVFKLLS 198


>gi|291406181|ref|XP_002719462.1| PREDICTED: alanyl-tRNA synthetase domain containing 1-like
           [Oryctolagus cuniculus]
          Length = 412

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 142/350 (40%), Gaps = 50/350 (14%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G   G  + L++T    +A+  F   A+   
Sbjct: 35  KEVLSG--FHVVLEDTLLFPEGGGQPDDRGTINGVSV-LRVTRRGPQADH-FTQTALTPG 90

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             ++      + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 91  SQVQ------VRVDWERRFDHMQQHSGQHLITAVADHLFGLKTT----SWELGRLRSTIE 140

Query: 623 HSKPITSAE-LKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVS 680
              P  SAE   +IE +VN+ I   LPV  R ++ ED  +       L   +   +RV++
Sbjct: 141 LDSPSVSAEQAAAIEQSVNEKIRDRLPVHVRELSLEDPEVEQVRGRGLPDDHTGPIRVIT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           ++  D     S +C GTHVS+  ++ ++ I+     +     +  + G R  S +     
Sbjct: 201 IQGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLSWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCH--------- 789
             K+L + LK          E+  E  RKLQ      ++     + DL+ H         
Sbjct: 256 TEKALTALLKCG-------AEDHVEAVRKLQNSTKLLQKNNLNLLRDLAVHIAHSLRNSP 308

Query: 790 ----------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                     K AD  FM+ I +E+ S+E    +    +K  +G+ +L G
Sbjct: 309 DWGGVVVLHRKEADSEFMNIIANEIGSEETLLFLTVGDEK-GAGLFLLAG 357


>gi|146100812|ref|XP_001468953.1| threonyl-tRNA synthetase [Leishmania infantum]
 gi|134073322|emb|CAM72048.1| putative threonyl-tRNA synthetase [Leishmania infantum JPCM5]
          Length = 788

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 78/152 (51%), Gaps = 17/152 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +L  D ++ R++   HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++
Sbjct: 106 LLDWDEKDAREV-FWHSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESD 163

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHS 690
            K+IE  + +++ Q +P     +++EDA+      L G T++  + ++++ +  DGG  +
Sbjct: 164 YKAIESAMQELVKQKMPYQRLEVSKEDAL-----RLFGYTEF--KSKILASKVPDGGSCT 216

Query: 691 SALCG-------GTHVSSTGEIMLLYIVSESS 715
              CG       G H+  TG +    +   SS
Sbjct: 217 VYRCGMLIDPCRGPHLPDTGRVKAFAVTKNSS 248


>gi|154344603|ref|XP_001568243.1| threonyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065580|emb|CAM43350.1| putative threonyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 789

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 16/137 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++ K+IE  + +++ Q 
Sbjct: 120 HSSSHVLGYALERIFDTKLSV-GPALKEGGFFYEGLTNRPVSESDYKAIESAMQELVKQK 178

Query: 647 LPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCG-------GTH 698
           +P     +++EDA+      L G T++  + ++++ +  DGG  +   CG       G H
Sbjct: 179 MPYQRLEVSKEDAL-----RLFGYTEF--KSKILASKVPDGGTCTVYRCGMLIDPCRGPH 231

Query: 699 VSSTGEIMLLYIVSESS 715
           +  TG +    +   SS
Sbjct: 232 LPDTGRVKAFAVTKNSS 248


>gi|56965736|ref|YP_177470.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56911982|dbj|BAD66509.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 637

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 7/124 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HAL  +  + V      +  DG  +DV   +PIT  +L  IE  +  II 
Sbjct: 75  LRHSTAHLLAHALKRLYPA-VHLGVGPVIGDGFFYDVALDQPITVGDLLRIEQMMKQIIK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSS 701
           +++ +  + + RE A        L  +  + +     V+V YE G  +   LC G H+ S
Sbjct: 134 EDMEITRKEVTREKAKQLFKQDPLKLELLEDIPPDETVTV-YEQGDFYD--LCRGPHIPS 190

Query: 702 TGEI 705
           TG+I
Sbjct: 191 TGKI 194


>gi|317486706|ref|ZP_07945523.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922089|gb|EFV43358.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 150

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 12/131 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A H+L+  +  + G   S + S +  D  + D    +P+  AE   +E  +N+++AQ+
Sbjct: 2   HTAEHVLNQTMVRMFGCGRSFS-SHLNADKSKCDYHFPRPLEDAEASELERRINEVLAQH 60

Query: 647 LPVVTRIMNREDA-----IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           +PV T ++ RE+A     +    A L G +    VR+V+V     G +    C G HV +
Sbjct: 61  MPVRTEMLPREEAGKLVDLGRLPAHLEGEE-ELMVRIVTV-----GDYDICPCIGEHVEN 114

Query: 702 TGEIMLLYIVS 712
           T E+    +VS
Sbjct: 115 TSEVGAFRLVS 125


>gi|195477347|ref|XP_002100173.1| GE16301 [Drosophila yakuba]
 gi|194187697|gb|EDX01281.1| GE16301 [Drosophila yakuba]
          Length = 436

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 35/235 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  ++
Sbjct: 43  VICENTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GTTAVHFVESSTSFEQDAEVL 96

Query: 573 LTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           LT+DYQ R      HS  HL+         +   S  LGS VS          ++    H
Sbjct: 97  LTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVSY---------IQLSTPH 147

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVS 680
              I+   L  IE   ND+I +   V   +++ E A     + A   L   +    RVV 
Sbjct: 148 L--ISRESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVR 205

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +E    G+ S+ +C GTHV++  ++  + ++    ++  +  +  + G+R  + L
Sbjct: 206 IE----GIESN-MCCGTHVTNISQLQCIKLLYAEKVKTNV-LVHFVVGERVLAKL 254


>gi|47096724|ref|ZP_00234309.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898274|ref|ZP_05258198.1| threonyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912233|ref|ZP_05262245.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936561|ref|ZP_05268258.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|47014908|gb|EAL05856.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609155|gb|EEW21763.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590208|gb|EFF98542.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 640

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI      ++G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKR--FKVIGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|260551943|ref|ZP_05825805.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260405346|gb|EEW98841.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 640

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  VV ++  R++ IA   A   G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E    G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|313902061|ref|ZP_07835474.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467670|gb|EFR63171.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 638

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 19/130 (14%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HL+  A+  +        G  +  DG  +D+   +P+++ +L++IE  +  I+ +
Sbjct: 72  RHSTAHLMAQAVKRLWPEAQLAVGPPLE-DGFFYDIQTPRPLSTDDLEAIEQEMARIVQE 130

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCG 695
           +LP+  R ++R++A+       L  +  +R +V  +E          YE G      LC 
Sbjct: 131 DLPIRRRPVSRQEALD------LFRQRGERYKVEIIESIPEDEPLTVYEQG--EFVDLCR 182

Query: 696 GTHVSSTGEI 705
           G H+ STG I
Sbjct: 183 GPHLPSTGRI 192


>gi|241950131|ref|XP_002417788.1| alanyl-tRNA synthetase-related protein, putative [Candida
           dubliniensis CD36]
 gi|223641126|emb|CAX45502.1| alanyl-tRNA synthetase-related protein, putative [Candida
           dubliniensis CD36]
          Length = 449

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 124/276 (44%), Gaps = 29/276 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEM 569
           V  + T  + E GGQ  D G    + D   +++  V + K + + + + ++E G   T++
Sbjct: 66  VELEDTILFPEGGGQPYDKGTITILPDNKIIEVKSVLRDKLKAVHLVNELIEPG---TQV 122

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           SL   ID+  R  +   H+  HLL    S +  ++  +  S    + + +    +K IT 
Sbjct: 123 SL--NIDWNRRIDIMQQHTGQHLL----SAVFDTYELETLSWSMGEDINYIELPTK-ITQ 175

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDG 686
             +  +++ VN +I + +P+   ++  +        + L   Y+     +R+V +     
Sbjct: 176 ELIIEVQNKVNQLIVEAIPIT--VVTPDQHGHEIDVSHLPDDYDLSKGIIRIVKI----- 228

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   +  C GTH++ST +I  + ++ +S IR G  R+    G R  ++L  + E L++  
Sbjct: 229 GELDANPCCGTHLTSTAQIQSIVLLHQSPIRGGHSRLYFTCGGRVANYLRKEHEILRN-- 286

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
               VS   +   +E + E+   L L + K    LN
Sbjct: 287 ----VSTNQLSCAIEVVEEKVELLSLNYKKANSTLN 318


>gi|198284332|ref|YP_002220653.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666034|ref|YP_002426993.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|259516307|sp|B7J7T0|SYT_ACIF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516338|sp|B5EN57|SYT_ACIF5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198248853|gb|ACH84446.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518247|gb|ACK78833.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 644

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+ ++        G  I  +G  +D    +  T  +L++IE  ++ ++ 
Sbjct: 71  IRHSTAHLLAQAVQSLYPEAQVTIGPVID-NGFYYDFAFPRGFTPEDLEAIEARMHALVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +NLPV   +++REDAIA      +G  Y   +       E   ++       LC G HV 
Sbjct: 130 ENLPVQREMLSREDAIA--LFEKMGEDYKVEIIRAIPRGEPLSLYRQGDFVDLCRGPHVP 187

Query: 701 STG 703
           STG
Sbjct: 188 STG 190


>gi|332110535|gb|EGJ10858.1| Threonyl/alanyl tRNA synthetase SAD [Rubrivivax benzoatilyticus
           JA2]
          Length = 242

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 23/220 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAE--GIFVHHAI--VERGILRT 567
           +V D+T FY + GGQ GD G  +  DG R+ I D +K  E  G+ VH A    +   L  
Sbjct: 30  IVLDRTVFYPQGGGQAGDAGELLATDGRRVAIADTRKHPEHPGVVVHRAAEGADLSWLAP 89

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++   ID   R+     HSATHLL   +   +      +G  IT    R D   ++P+
Sbjct: 90  GTAVRAAIDVARRQAHRRFHSATHLLCALVPQPV------DGCSITAGYARLDFHMTEPL 143

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEY 683
               L +    +  ++A+  PV TR ++ ++  A+     + ++   +   RVR+V +E 
Sbjct: 144 DKDLLGA---GLARLVAEARPVHTRWISEDELDANPQLVRSMSVQPPRGQGRVRLVEIEG 200

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            D        CGGTHV++T EI  + +       A  RR+
Sbjct: 201 LD-----LQPCGGTHVANTAEIGAVVVTKIEKKSAKTRRV 235


>gi|297617667|ref|YP_003702826.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145504|gb|ADI02261.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT + ++ R++   HS+ H++  A+  +        G  I   G  +D    +P T  +
Sbjct: 59  ILTFEDEDGREV-YRHSSAHVMAQAVKRLFPGTRLAIGPAID-KGFYYDFDPEQPFTPED 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              IE  +  II+ + P+V + ++RE+A+   +   LG  Y   +     E E   V+  
Sbjct: 117 FDRIEQEMQSIISADYPIVRKEISREEALELFSG--LGETYKVELIEGLAEGETISVYQQ 174

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G H+ STG+I    ++S
Sbjct: 175 GEFIDLCAGPHLMSTGKIKAFKLMS 199


>gi|37522455|ref|NP_925832.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|73919794|sp|Q7NCU0|SYT_GLOVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|35213456|dbj|BAC90827.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 627

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +H+L  A+  +        G  I  +G  +D     P T  +LK IE  +  I+ 
Sbjct: 48  IRHSTSHILAMAVQKLFPETKVTIGPAIE-NGFYYDFDRPTPFTPEDLKKIEKEMRRIVQ 106

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-------DRVRVVSVEYEDGGVHSSALCGGT 697
           Q LP+V   + RE A+     A LG  Y        D    VS+ Y  G      LC G 
Sbjct: 107 QKLPLVREEVPRE-AMRERLEA-LGEPYKLELFEGFDHDAPVSL-YRTGDWWD--LCAGP 161

Query: 698 HVSSTGEI 705
           HV ST EI
Sbjct: 162 HVESTAEI 169


>gi|149374489|ref|ZP_01892263.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149361192|gb|EDM49642.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 641

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +  S     G  +  +G  +D    +P T+ +L  IE  + ++  
Sbjct: 71  IRHSTAHLLAMAVKELFPSAQVTIGPVVD-NGFYYDFKFDRPFTNEDLSRIEKRMEELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q++PV   +M+R++A+       +G +Y  R+       ED   +       LC G HV 
Sbjct: 130 QDIPVSRSVMSRDEAVR--LFDEMGEEYKVRIIEDIPGEEDLSFYRQGDFIDLCRGPHVP 187

Query: 701 STGEI 705
           +TG++
Sbjct: 188 NTGKL 192


>gi|322495387|emb|CBZ30691.1| putative threonyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 787

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 78/152 (51%), Gaps = 17/152 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +L  D ++ R++   HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++
Sbjct: 105 LLDWDDKDAREV-FWHSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESD 162

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHS 690
            K+IE  + +++ Q +P     +++EDA+      L G T++  + ++++ +  DGG  +
Sbjct: 163 YKAIESAMQELVKQKMPYQRLEVSKEDAL-----RLFGYTEF--KSKILASKVPDGGSCT 215

Query: 691 SALCG-------GTHVSSTGEIMLLYIVSESS 715
              CG       G H+  TG +    +   SS
Sbjct: 216 VYRCGMLIDPCRGPHLPDTGRVKAFAVTKNSS 247


>gi|238620148|ref|YP_002914974.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.4]
 gi|238381218|gb|ACR42306.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.4]
          Length = 236

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 12/209 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GG   DTG  I + G ++ +T+  K+ E   + H I +   L     +
Sbjct: 27  VILDKTAFYPGGGGLENDTGFLINERGEKINVTEA-KRGENGEILHKIDQNASLNVGDKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  + D       T  E
Sbjct: 86  IGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQAKDDFNVENKDTLIE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L    +  N+I+ + + +    + RE+A+   A   L  +   ++ +  +  E  G+   
Sbjct: 144 LI---NEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPIWRI-VEIPGIDIQ 199

Query: 692 ALCGGTHVSST---GEIMLLYIVSESSIR 717
           A  GG HV++T   GEI+LL + ++   R
Sbjct: 200 A-DGGPHVNNTKEIGEIVLLKVENKGKGR 227


>gi|46581046|ref|YP_011854.1| alanyl-tRNA synthetase family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601658|ref|YP_966058.1| threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
 gi|46450467|gb|AAS97114.1| alanyl-tRNA synthetase family protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120561887|gb|ABM27631.1| Threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
 gi|311234729|gb|ADP87583.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris RCH1]
          Length = 147

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSC----ITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           H+A H+L+  +    G      G C    I P   + D       + AE + +E+ VN I
Sbjct: 10  HTAEHVLNGVMVATFGC-----GRCFSAHINPKKSKCDYHFDGVFSDAEARLVEERVNAI 64

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +    PVV   ++RE+A        L     + VRV+SV     G H +  C G HV++T
Sbjct: 65  LQSGQPVVETFLSREEAAVRFDLTRLPADAGETVRVISV-----GEHDACPCIGPHVANT 119

Query: 703 GEIMLLYIVS 712
            E+  L I+S
Sbjct: 120 LEVGTLRIIS 129


>gi|167569390|ref|ZP_02362264.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           oklahomensis C6786]
          Length = 243

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 30/224 (13%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAEGIFVHHAI---------VERG 563
            D+T FY   GGQ GD+G   +  G  L + D +K K EG     A+         +  G
Sbjct: 30  LDRTVFYPLGGGQAGDSGMLTLPGGATLAVADTRKAKFEGATPDDAVHVLAPGQEALAAG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   ++V  ID+  R +    H+A+HLL   L   +      +G  +T D  R D   
Sbjct: 90  V-KPGDAVVAEIDWTPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYARIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRVV 679
            +PI  A    ++  + +++    PV T  I + E A        +  K      RVR++
Sbjct: 143 VEPIDRA---FVDARLAELVGGAHPVTTEWITDDEMAERPDLVRTMSVKPPMGLGRVRLL 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +    GG+     CGGTHV +T EI  L +       A  RR+
Sbjct: 200 RI----GGIDLQP-CGGTHVRNTAEIGGLRVAKLEKKSARTRRL 238


>gi|260835389|ref|XP_002612691.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae]
 gi|229298070|gb|EEN68700.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae]
          Length = 407

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 130/317 (41%), Gaps = 49/317 (15%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ + T  + E GGQ  D G  I D   +++T  Q +A    VH   VE   L     +
Sbjct: 38  EVILEDTILFPEGGGQPDDRG-KINDVDVIRVTRKQNQA----VH--FVETP-LEVGSEV 89

Query: 572 VLTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRFDVT 622
            + +D+  R      HS  HL+         +   S  LGS VS          +  D  
Sbjct: 90  KMEVDWTRRFDHMQQHSGQHLITAIAEAKFGYKTTSWDLGSKVS---------SIEMD-- 138

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAAALLGTKYNDRVRVVSV 681
            +  IT  +L  +E  VN+ I + +P+  R++      +    +  L   +   VRVV +
Sbjct: 139 -TPTITLEQLSELEREVNECIRRQIPMTPRLLEPGSPELEQVRSRGLPDDHIGPVRVVEI 197

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           E  D   H++  C GTHVS+   +  + ++S    + G   +  + G R    +    ++
Sbjct: 198 EGID---HNT--CCGTHVSNLAHLQAIKLLSLEKGKKGKTNVMFVAGNRVLDFVGRAYDR 252

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEE-----------YRKLQLIHAKR-KLQLNVEDLSC- 788
            K L   LK      V   +++ +             R + ++ A+R K Q N + + C 
Sbjct: 253 EKGLTGILKCPPEEHVEMADKLQKSLRISNKTCTGLLRDVAVLEAQRYKSQPNRDPVFCL 312

Query: 789 -HKIADVNFMSHIISEV 804
             K  D  FM+ I +EV
Sbjct: 313 HRKEGDSEFMNIIANEV 329


>gi|254449956|ref|ZP_05063393.1| alanyl-transfer RNA synthetase domain protein [Octadecabacter
           antarcticus 238]
 gi|198264362|gb|EDY88632.1| alanyl-transfer RNA synthetase domain protein [Octadecabacter
           antarcticus 238]
          Length = 239

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 19/200 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ D + FYA +GGQ GD+G     G  + I    K A G  +        +      + 
Sbjct: 28  IILDASIFYATSGGQPGDSGTLTWQGGAIDIATAVKGAGGTIILVPAEPNALPAVGTKVS 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            +++++ R +    H+A HL    LS ++   V+  G  I  +  R D     P   A+ 
Sbjct: 88  QSLNWERRHRHMRVHTALHL----LSVVIPLPVT--GGSIGAEKGRLDF--DMPDAIADK 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYEDGGV 688
            ++E+ +N++I  +  + T  ++  +  A+       ++   K   R+R+V +    G  
Sbjct: 140 AALENTLNELIDCHFDISTEWIDESELAANPELVKTMSVAPPKGAGRIRMVRI----GAA 195

Query: 689 HSSA---LCGGTHVSSTGEI 705
            ++A    CGGTHV +T EI
Sbjct: 196 ENTADYQPCGGTHVRNTSEI 215


>gi|255014047|ref|ZP_05286173.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 153

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N   I     + D   ++  +
Sbjct: 1   MEQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKNAH-IERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E+A      + L    +D +R+V +     G 
Sbjct: 60  AEVMAEVEKKINEVIDRHLPVTIEFMPKEEAGGIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEI 705
           + +  C G+HV++T EI
Sbjct: 115 YDACACIGSHVANTSEI 131


>gi|15615703|ref|NP_244007.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
 gi|20139931|sp|Q9K866|SYT_BACHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10175763|dbj|BAB06860.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
          Length = 645

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  H++  AL  +      + G   +   G  +DV   + +T  +L  IE  +  II
Sbjct: 74  LRHSTAHVMAQALKRLFKDRNVKLGVGPVIEGGFYYDVDMDESLTPEDLPKIEKEMKKII 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVE-YEDGGVHSSALCGGT 697
            +NLP+   +++RE+A+A      +G  Y     ND     ++  YE G      LC G 
Sbjct: 134 GENLPIERVVVSREEALARYEE--VGDPYKIELINDLPEDETITIYEQGEFFD--LCRGV 189

Query: 698 HVSSTGEI 705
           HV STG++
Sbjct: 190 HVPSTGKL 197


>gi|322502963|emb|CBZ38047.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 788

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 78/152 (51%), Gaps = 17/152 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +L  D ++ R++   HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++
Sbjct: 106 LLDWDDKDAREV-FWHSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESD 163

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHS 690
            K+IE  + +++ Q +P     +++EDA+      L G T++  + ++++ +  DGG  +
Sbjct: 164 YKAIESAMQELVKQKMPYQRLEVSKEDAL-----RLFGYTEF--KSKILASKVPDGGSCT 216

Query: 691 SALCG-------GTHVSSTGEIMLLYIVSESS 715
              CG       G H+  TG +    +   SS
Sbjct: 217 VYRCGMLIDPCRGPHLPDTGRVKAFAVTKNSS 248


>gi|255024220|ref|ZP_05296206.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 279

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D+++   + + HS  HL+  AL  +        G  I   G  +D+     I+   
Sbjct: 18  IVTPDHEDALGI-LRHSTAHLMAQALKRLYPDVKFGVGPAIDT-GFYYDIDTEAVISDES 75

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  IE  +  I+ +N+P+   +++RE+AI    A  +G +Y   +     E E   +++ 
Sbjct: 76  LVEIEKEMQKIVRENIPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQ 133

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG+I +  ++S
Sbjct: 134 GEFFDLCRGVHVPSTGKIQVFKLLS 158


>gi|209549439|ref|YP_002281356.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065117|sp|B5ZQK2|SYT_RHILW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209535195|gb|ACI55130.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 668

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPDDLPKIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P   +I +RE A    AA   G  Y   +       +D  +++      LC G H++
Sbjct: 132 RNAPFTKQIWSREKAKEVFAAK--GENYKVELVDAIPAGQDLKIYNQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG++
Sbjct: 190 STGQV 194


>gi|254168752|ref|ZP_04875594.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289596811|ref|YP_003483507.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
 gi|197622378|gb|EDY34951.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289534598|gb|ADD08945.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
          Length = 233

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 26/201 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +  D+T FY   GGQ  DTG  I +G    +T V+++     +H    E+  +  E+  +
Sbjct: 28  IYLDRTAFYLGGGGQPADTGKIIANGKEYVVTGVRREDA---LHLIEGEKPEIGEEVKGI 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL-----RFDVTHSKPI 627
             I+++ R ++   H+A H+       I G    Q G  IT + L     R D++     
Sbjct: 85  --INWERRYKIMRTHTAVHV-------ISGVAYQQFGVVITGNQLYEGRARLDLSFENMS 135

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYE 684
               ++ IE++ N ++ ++LPV    +++E+         +  K     D++RVV +E  
Sbjct: 136 KELAMQIIEES-NKVVKKDLPVRWYFISKEEFKNRPELMRVNPKLYEKYDKIRVVEIE-- 192

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
             G    A  GGTHV    EI
Sbjct: 193 --GFDIQA-DGGTHVKHLAEI 210


>gi|262281009|ref|ZP_06058792.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257909|gb|EEY76644.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ ++E+ +  +I Q+  VV ++  R++ IA   A   G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAVEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E    G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|298291392|ref|YP_003693331.1| threonyl/alanyl tRNA synthetase SAD [Starkeya novella DSM 506]
 gi|296927903|gb|ADH88712.1| Threonyl/alanyl tRNA synthetase SAD [Starkeya novella DSM 506]
          Length = 237

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 21/200 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MS 570
           +V D+T FYA AGGQ GD G  +  +G  + I         + + H  V   IL     +
Sbjct: 29  IVVDRTVFYATAGGQPGDRGTLLRTNGTEIPIETAIYGPSKVDIVHVPVGGPILPEPGEA 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           + L +D+  R +    H+A HLL  AL   + G  + +  S      L FD+    P   
Sbjct: 89  VTLRLDWATRHRRMRMHTALHLLSVALPFPVTGGSIGEEESR-----LDFDI----PEAG 139

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKY---NDRVRVVSVEYED 685
            +   I   + ++IA    V  R ++ E+ +A+ G    +  K      +VR+V +   D
Sbjct: 140 LDKDEITARLAEMIASGAKVSERWISDEELLANPGLVKTMAVKPPMGTGKVRLVEIAGLD 199

Query: 686 GGVHSSALCGGTHVSSTGEI 705
                   CGGTHV S  EI
Sbjct: 200 -----LQPCGGTHVRSLEEI 214


>gi|256831207|ref|YP_003159935.1| Threonyl/alanyl tRNA synthetase SAD [Desulfomicrobium baculatum DSM
           4028]
 gi|256580383|gb|ACU91519.1| Threonyl/alanyl tRNA synthetase SAD [Desulfomicrobium baculatum DSM
           4028]
          Length = 147

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSC----ITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           H+A H+L+  +  +        G C    + PD  + D  +++ +T AE + +E  VN +
Sbjct: 10  HTAEHILNQTMDRLFAC-----GRCFSAHVNPDKAKCDYHYNRDLTEAEARDVEARVNAV 64

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           IA +LPV    M R +A        L    ++ +R++ +     G + +  C G HV  T
Sbjct: 65  IAADLPVFAENMARSEAQTLFNLERLPNDASEELRIIRI-----GDYDACPCIGEHVDQT 119

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQ 729
             + +  + +  S   G+ R+    G+
Sbjct: 120 SALGVFRLTTH-SFENGVLRLRFKLGK 145


>gi|167562141|ref|ZP_02355057.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           oklahomensis EO147]
          Length = 243

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 30/224 (13%)

Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAEGIFVHHAI---------VERG 563
            D+T FY   GGQ GD+G   +  G  L + D +K K EG     A+         +  G
Sbjct: 30  LDRTVFYPLGGGQAGDSGMLTLPGGATLAVADTRKAKFEGATPDDAVHVLAPGQEALAAG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   ++V  ID+  R +    H+A+HLL   L   +      +G  +T D  R D   
Sbjct: 90  V-KPGDAVVAEIDWTPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYARIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRVV 679
            +PI  A    ++  + +++    PV T  I + E A        +  K      RVR++
Sbjct: 143 VEPIDRA---FVDARLAELVGGAHPVTTEWITDDEMAERPDLVRTMSVKPPMGLGRVRLL 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +    GG+     CGGTHV +T EI  L +       A  RR+
Sbjct: 200 RI----GGIDLQP-CGGTHVRNTAEIGGLRVAKLEKKSARTRRL 238


>gi|326518808|dbj|BAJ92565.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 305

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)

Query: 639 VNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+           E ++ 
Sbjct: 1   VNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLANPESKEW 60

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
              S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T + A   +
Sbjct: 61  LSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAM 109


>gi|221633766|ref|YP_002522992.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155914|gb|ACM05041.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 251

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 18/219 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GGQ  DTG  +  DG   ++  +++      + H +++R       ++
Sbjct: 29  VILDRTAFYPGGGGQPHDTGELVSTDGRSWRVVSLRRGTTADEIVH-LLDREPPPVGTAV 87

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D+  R +L   H+A H+L   +    G+ V+  G+ +  D  R D    + +    
Sbjct: 88  RGVLDWDRRYRLMRFHTALHVLSAVVFREFGALVT--GANLDVDKARMDF-ELEDLAPER 144

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYED 685
           +  IE   N+ IA+ LPV    + R  A A     L+ TK N        +RVV +   D
Sbjct: 145 VARIEQLANEAIARGLPVRWWTIPR--AEAERIPDLIRTKVNLLPPSIQSIRVVEISGLD 202

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    GGTHV +T EI  + +V   S     +RIE
Sbjct: 203 LQAD-----GGTHVRNTREIGGIRVVGTRSKGRNNKRIE 236


>gi|116872988|ref|YP_849769.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458497|sp|A0AJ08|SYT_LISW6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116741866|emb|CAK20990.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 640

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     + E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPKDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 185 VPSTGKIQVFKLLS 198


>gi|254515029|ref|ZP_05127090.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219677272|gb|EED33637.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 645

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  I  DG  +D       T  +L  IE+ +  I+A
Sbjct: 71  IRHSTAHLLAMAVQDLFPGTQVTIGPVID-DGFYYDFAGEHQFTPDDLPKIEERMAQIVA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            ++PV   +M+R++A A  A   +G  Y   +     E E+  ++       LC G HV 
Sbjct: 130 DDVPVERIVMDRDEAAA--AFEKMGESYKVEIIRDLPEGEEISLYKQGAWMDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|115446545|ref|NP_001047052.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|50251985|dbj|BAD27919.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|50252661|dbj|BAD28830.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113536583|dbj|BAF08966.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|215765092|dbj|BAG86789.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623006|gb|EEE57138.1| hypothetical protein OsJ_07040 [Oryza sativa Japonica Group]
          Length = 674

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E  +VL  +  + R L I H+  H++  A+  +  +     G  I  +G  +D    +P+
Sbjct: 88  EERVVLPTNESSDRLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWID-NGFYYDFD-MEPL 145

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG- 686
           T  +LK I+  ++ II +NLP+V   ++RE+A     A  L   Y  ++ ++    ED  
Sbjct: 146 TDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKRIEA--LNEPY--KLEILEGIKEDPI 201

Query: 687 -----GVHSSALCGGTHVSSTGEI 705
                G     LC G HV STG+I
Sbjct: 202 TIYHIGEEWWDLCAGPHVESTGKI 225


>gi|13924625|gb|AAK49078.1|AF258286_1 alanyl-tRNA synthetase [Brassica oleracea]
          Length = 100

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV+  +V  RV+ 
Sbjct: 1   SEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVNAEDVTNRVDN 60

Query: 763 IWEEYR 768
           + EE R
Sbjct: 61  LLEELR 66


>gi|256839616|ref|ZP_05545125.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256738546|gb|EEU51871.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 153

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N   I     + D   ++  +
Sbjct: 1   MKQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKNAH-IERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E A      + L    +D +R+V +     G 
Sbjct: 60  AEAMAEVEKKINEVIDRHLPVTIEFMPKEKAGGIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEI 705
           + +  C G+HV++T EI
Sbjct: 115 YDACACIGSHVANTSEI 131


>gi|299066586|emb|CBJ37776.1| threonine tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 635

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + +R+DA+       +G KY   +     + ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWSRDDAVKLFEG--MGEKYKAEIIASIPQDQEIGLYREGNFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|255019069|ref|ZP_05291195.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 188

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D+++   + + HS  HL+  AL  +        G  I   G  +D+     I+   
Sbjct: 24  IVTPDHEDALGI-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDES 81

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  IE  +  I+ +N+P+   +++RE+AI    A  +G +Y   +     E E   +++ 
Sbjct: 82  LVEIEKEMQKIVRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQ 139

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG+I +  ++S
Sbjct: 140 GEFFDLCRGVHVPSTGKIQVFKLLS 164


>gi|330819285|ref|YP_004348147.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327371280|gb|AEA62635.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 682

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+ + +P T  +L +IE  + ++I 
Sbjct: 90  IRHSCAHLLGHAVKQLYPDANMVIGPVIE-DGFYYDIAYPRPFTPEDLAAIEQRMRELID 148

Query: 645 QNLPVVTRIMNREDAI 660
            +  V+ R++ RE+AI
Sbjct: 149 LDYEVIKRVLPREEAI 164


>gi|15889049|ref|NP_354730.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22654115|sp|Q8UEL1|SYT_AGRT5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15156846|gb|AAK87515.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 667

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPEDLPKIEKRMKEIIQ 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    I +RE A    AA   G  Y   +     E +D  ++       LC G H++
Sbjct: 132 RNKPFTREIWSREKAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG+I
Sbjct: 190 STGQI 194


>gi|254251835|ref|ZP_04945153.1| hypothetical protein BDAG_01037 [Burkholderia dolosa AUO158]
 gi|124894444|gb|EAY68324.1| hypothetical protein BDAG_01037 [Burkholderia dolosa AUO158]
          Length = 243

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 34/246 (13%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A +   + + EAV    + +  D+T FY   GGQ GD+G   + DG  L I D +K K +
Sbjct: 11  AYLTHCDAIVEAVGDDGIRL--DRTVFYPLGGGQAGDSGTLTLPDGSTLAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGILRTEMSLVLT--------IDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+      + E+   L         ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQHELVATLARGARVSAAIDWTRRYRHMRLHTAAHLMCAVLPYPV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
               +G  +T D +R D   S  I   +   +E  +  ++A   PV T  +  ++ +   
Sbjct: 127 ----DGCSVTADYVRLDFATSDAI---DRDDVERRLAALVAGAYPVTTEWITDDEMVER- 178

Query: 664 AAALLGTKYND------RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              L+ T          RVR++ ++    GV     CGGTHV +T EI  L +       
Sbjct: 179 -PELVRTMSVKPPMGLGRVRLLRID----GVDLQP-CGGTHVRNTSEIGSLRVAKLEKKS 232

Query: 718 AGIRRI 723
           A  RR+
Sbjct: 233 ARTRRV 238


>gi|229823243|ref|ZP_04449312.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
 gi|229787409|gb|EEP23523.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
          Length = 647

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  HL+ HAL+ +  G H    G  I   G  +D      +T  +L ++E  +  II
Sbjct: 73  MRHSTAHLMAHALTRLYPGIHFGV-GPAIE-SGFYYDTDKEVQLTEDDLPAVEKEMKKII 130

Query: 644 AQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +QN P+V R ++R +A+           L+     D V +   + ED     + LC G H
Sbjct: 131 SQNYPIVRREVSRAEALELFKHDPYKVELITDLPADEV-ITVYQQED----FTDLCRGIH 185

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I +  ++S
Sbjct: 186 VPSTGKIKVFKLLS 199


>gi|172058202|ref|YP_001814662.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|171990723|gb|ACB61645.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 646

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 19/139 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I HS+ HL+  A+  +        G   T  +G  +D+   + +T  +L  IE  +N I 
Sbjct: 73  IRHSSAHLMAQAIKRLYPDETIHLGIGPTIENGFYYDIDMERRLTEEDLPEIEKMMNKIA 132

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
            +NLP+   +++R++A+A      +  + ND +++  +E          Y  G      L
Sbjct: 133 GENLPIEREVVSRDEALA------VYQELNDPLKIELIESIPADQDLTFYRQGEFFD--L 184

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV +T ++ +  ++S
Sbjct: 185 CRGPHVPATAKLQVFKLMS 203


>gi|72547539|ref|XP_843247.1| threonyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|323363762|emb|CBZ12768.1| putative threonyl-tRNA synthetase [Leishmania major strain
           Friedlin]
          Length = 787

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 70/137 (51%), Gaps = 16/137 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++ K+IE  + +++ Q 
Sbjct: 119 HSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESDYKAIESAMQELVKQK 177

Query: 647 LPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCG-------GTH 698
           +P     +++EDA+      L G T++  + ++++ +  DGG  +   CG       G H
Sbjct: 178 MPYQRLEVSKEDAL-----RLFGYTEF--KSKILASKVPDGGSCTVYRCGMLIDPCRGPH 230

Query: 699 VSSTGEIMLLYIVSESS 715
           +  TG +    +   SS
Sbjct: 231 LPDTGRVKAFAVTKNSS 247


>gi|238927112|ref|ZP_04658872.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885092|gb|EEQ48730.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 639

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 14/142 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSA 630
           VLT + +  R  ++ H+A H++  A+  +   S+V         +G  +D      +T A
Sbjct: 59  VLTFEDEGGRH-ALRHTAAHVMAQAVKRLYPESNVQLAIGPAIENGFYYDFDMEHQLTDA 117

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGV- 688
           +L  IE  +  I+ +N P+V R ++R DAI     AL   K  N +V ++    E+  + 
Sbjct: 118 DLHEIEKEMKKIVKENFPLVRREISRADAI-----ALFREKGENYKVELIEDLPENAVIS 172

Query: 689 -----HSSALCGGTHVSSTGEI 705
                  + LC G HV+STG++
Sbjct: 173 LYTQGEFTDLCAGPHVASTGKV 194


>gi|218190922|gb|EEC73349.1| hypothetical protein OsI_07557 [Oryza sativa Indica Group]
          Length = 674

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 8/142 (5%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E  +VL  +  + R L I H+  H++  A+  +  +     G  I  +G  +D    +P+
Sbjct: 88  EERVVLPTNESSDRLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWID-NGFYYDFD-MEPL 145

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEY 683
           T  +LK I+  ++ II +NLP+V   ++RE+A     A  L   Y     + ++   +  
Sbjct: 146 TDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKRIEA--LNEPYKLEILEGIKEEPITI 203

Query: 684 EDGGVHSSALCGGTHVSSTGEI 705
              G     LC G HV STG+I
Sbjct: 204 YHIGEEWWDLCAGPHVESTGKI 225


>gi|254520162|ref|ZP_05132218.1| threonyl/alanyl tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226913911|gb|EEH99112.1| threonyl/alanyl tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 399

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 172/392 (43%), Gaps = 56/392 (14%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF--VHHAIVERGILRT 567
           K  +  D+T F+   GGQ     C IG+   + + DV ++   I+  V   I +  I++ 
Sbjct: 27  KFHIALDKTAFFPGGGGQC----CDIGELNGINVLDVYEENREIYHVVSQDISDSTIVKG 82

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-----HVSQNGSCITPDGLRFDVT 622
           +      ID+  R      H A H+L      +        H+ ++ S +   G      
Sbjct: 83  K------IDWDRREDGMHQHLAQHVLSGCFFKLFNCNTVSIHLGKDISTVDIIG------ 130

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSV 681
               +T  +++  E   N II +N+ V + +   +E    +    L  T+  + +RVV +
Sbjct: 131 ---NLTEEKIRKAEKMANYIIRENILVESFVPTEKELENMNLRRDLPNTE--EEIRVVKI 185

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G +  +A CG  H   T ++ L+ I      +   R IE ++G+RA    + +D+ 
Sbjct: 186 ----GDLDINACCG-VHPKRTLDLKLIKIKKYEKNKNNTR-IEFLSGERAVKDSLYKDKM 239

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-- 799
           LK + ++L  ++   +  ++ +      L   + KRKL+   E+L  ++I   N +S+  
Sbjct: 240 LKDICNYLSSNEEEALNSIKNLKSNIDALS--NEKRKLE---EELINYEIE--NILSNSS 292

Query: 800 ------IISEVDSKELKSVMDALQKKI--QSGIIMLVG--ISKEKKASVLIVVTEDLLDR 849
                 II+++ ++     +  L  KI  +S II L     +   K ++L   ++D L++
Sbjct: 293 KENDLTIITKIFNERSIDYIRKLANKIGDRSNIICLFATINNNNNKTNILFSCSKD-LEQ 351

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            N   L + S K + G GGG +  +AQ  G N
Sbjct: 352 VNMGKLLKESIKEINGKGGGSKI-LAQGSGEN 382


>gi|320109353|ref|YP_004184943.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927874|gb|ADV84949.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 676

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 10/127 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+ T L   V       T +G  +D+   KP T  +L +IE  + D++ 
Sbjct: 102 LRHSAAHVMATAI-TELYPEVKLGHGPATDNGFFYDIYREKPFTPDDLAAIEQRMADVVK 160

Query: 645 QNLPVVTRIMNREDAIASGAA------ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           ++ P +     RE A+A  AA           K+      VS+ Y++G    +  C G H
Sbjct: 161 RDEPFLRSYEPREQALADYAAHGEFMKQHFIEKFTHPGEEVSL-YKNGAF--TDFCRGPH 217

Query: 699 VSSTGEI 705
           V STG +
Sbjct: 218 VPSTGRV 224


>gi|296133381|ref|YP_003640628.1| threonyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031959|gb|ADG82727.1| threonyl-tRNA synthetase [Thermincola potens JR]
          Length = 637

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  R++   HS++H+L  A+  +        G  I  DG  +D    +  T  +
Sbjct: 61  ILTFDDEEGREV-FRHSSSHVLAQAVKHLFPETKLGIGPAIA-DGYYYDFDVKENFTPED 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  +  I+ Q+LP     ++RE+A+       +G  Y  +V +++   ED  +   
Sbjct: 119 LEKIEKEMEKIVQQDLPFERSELSREEALKLFNE--MGEPY--KVELINDLPEDAVISCY 174

Query: 692 A------LCGGTHVSSTGEIMLLYIVS 712
                  LC G HV STG++  + ++S
Sbjct: 175 KQGDFVDLCAGPHVPSTGKLKAIKLMS 201


>gi|326790613|ref|YP_004308434.1| threonyl/alanyl tRNA synthetase SAD [Clostridium lentocellum DSM
           5427]
 gi|326541377|gb|ADZ83236.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium lentocellum DSM
           5427]
          Length = 254

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 31/197 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGI--RLQIT--DVQKKAEGIFV------------ 555
           +V DQT  + E GGQ  D GC  I D    RL+I   +V+K    +F+            
Sbjct: 29  IVCDQTVAFPEGGGQQADKGCFLIEDNFKQRLKILFFNVKKGVGDVFLEQDFPTISVNTP 88

Query: 556 --HHAIVER-GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSC 611
             H+  VE     +  M + + ID + R +L+I+H+A HL+  A+  +    ++   G+ 
Sbjct: 89  IYHYIEVEYLRYFKVGMKVKICIDVERRARLTISHTAIHLVLMAIDRVRKGIITYVKGAD 148

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNREDAI---------A 661
           I  D  R D      +   E+  I + VN++I  +  + T   + +++A+         A
Sbjct: 149 IREDLARLDFFIHDKLNDDEIMKITECVNELILNDYKIETYAHVKQKEAVYWKCLDYVCA 208

Query: 662 SGAAALLGTKYNDRVRV 678
            G   L  TKY   VR+
Sbjct: 209 CGGTHLPSTKYIGNVRI 225


>gi|15606769|ref|NP_214149.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|8928367|sp|O67583|SYT_AQUAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2984004|gb|AAC07549.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 638

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDV-THSKPITSAELKSIEDNVNDI 642
           + HS  H++  AL  + G+     G    T +G  +DV      IT  +L  IE  + +I
Sbjct: 69  MRHSLAHIMAQALKELYGAKKVHLGVGPTTEEGFYYDVEVEGHKITEEDLPKIEQKMKEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCG 695
           I ++ P++ R ++RE+AI       L  KY   +        V+SV YE G      LC 
Sbjct: 129 IERDYPILRRELSREEAIK--LFDKLKEKYKIDIIKEIPEEEVISV-YEQGDFID--LCK 183

Query: 696 GTHVSSTGE 704
           G H+ STG+
Sbjct: 184 GPHLPSTGK 192


>gi|327275562|ref|XP_003222542.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like [Anolis
           carolinensis]
          Length = 542

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 25/268 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q   V+ + T  + E GGQ  D G   G  + L++T  ++  + +      +E G     
Sbjct: 169 QGYHVILEDTILFPEGGGQPDDRGLMNGIPV-LRVT--RQGPDALHFIQTPLEPG----- 220

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R      HS  HL+      + G   +          +  D +    +T
Sbjct: 221 SEVQLELDWDRRFDHMQQHSGQHLITALADLMFGFKTTSWELGRQRSTIELDTSS---MT 277

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YNDRVRVVSVEY 683
             ++ ++E +VND I   +PVV R    E A+      ++ ++     +   VR++S+E 
Sbjct: 278 PEQVAALEQSVNDKIRARVPVVVR----EFAVGDPEVEMVRSRGLPDDHTGPVRIISIEG 333

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D       +C GTHVS+  ++ ++ ++     +     +  + G R    L       K
Sbjct: 334 IDAN-----MCCGTHVSNLSDLQVVKLLGTEKGKKNKTNLVFLAGNRVLKTLERNHTTEK 388

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +L S LK      V  V+ +    ++LQ
Sbjct: 389 ALTSLLKNGPEEHVEAVKRLQNSLKQLQ 416


>gi|193084147|gb|ACF09813.1| putative metal-dependent hydrolase related to alanyl-tRNA
           synthetase [uncultured marine group III euryarchaeote
           SAT1000-53-B3]
          Length = 244

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 22/220 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  ++T FY   GGQ  D G    +     + DV+KK     + H +VE  +     S+ 
Sbjct: 30  VELEETAFYHLGGGQPSDKGTLNWEDGESIVYDVRKKNR---IRH-MVEGDLPEVGDSVN 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +++  R      H++ HL+   +S + G+     G+ I  D  R D    K ++  E+
Sbjct: 86  GKLNWDRRYTHMRMHTSQHLVSAIVSDLYGADTV--GNQIGFDKSRIDFKPLK-LSMNEI 142

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNRED---------AIASGAAALLGTKYNDRVRVVSVEY 683
             + D  ND + +++ V     NR D         +++SG   LL  K   R+RV+S++ 
Sbjct: 143 DDLIDRTNDYVTKDISVNISEANRSDLEGNPEIRSSMSSGLWKLL-PKSVTRLRVISIDE 201

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            D        C GTHV S  EI  +  V   +  AG +R+
Sbjct: 202 ID-----VCPCAGTHVRSLKEIGKVEFVKRDNKGAGKQRL 236


>gi|118595089|ref|ZP_01552436.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
 gi|118440867|gb|EAV47494.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
          Length = 635

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L  IE  + ++  
Sbjct: 71  IRHSTAHLLANAVKELFPEAQVTIGPVID-EGFYYDFSYKRPFTPDDLLVIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++LP+   IM R++AI   +   LG  Y  ++     + E   ++       LC G HV 
Sbjct: 130 KDLPIERSIMPRKEAIQFFSD--LGEHYKSQIIESIPQSESVSLYKQGDFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           ST ++ +  ++
Sbjct: 188 STAKLKVFKLM 198


>gi|148358548|ref|YP_001249755.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|296108363|ref|YP_003620064.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166223351|sp|A5IAK9|SYT_LEGPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148280321|gb|ABQ54409.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|295650265|gb|ADG26112.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 637

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 7/144 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  +D   
Sbjct: 50  LIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVIE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  +L  IE  ++++   NL +  R + R +AI    +  LG +Y  ++     E 
Sbjct: 109 ERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKS--LGEEYKAKIIADIPEN 166

Query: 684 EDGGVHSSA----LCGGTHVSSTG 703
           E   ++       LC G HV STG
Sbjct: 167 EALSLYRQGDFEDLCRGPHVPSTG 190


>gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166223347|sp|A4G619|SYT_HERAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|133738909|emb|CAL61956.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Herminiimonas arsenicoxydans]
          Length = 635

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFYYDFSYKRPFTPEDLLAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  +++ R+ A+    +  +G  Y   +       +D  +++    + LC G HV 
Sbjct: 130 KDEPVTRQVLPRDVAVEYFKS--IGEAYKAEIIASIPADQDVSLYTEGKFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|312217078|emb|CBX97027.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 275

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 29/204 (14%)

Query: 518 TPFYAEAGGQLGDTGC-AIGDGIR---LQITDVQKKAEGIFVHHAI---VERGILRTEMS 570
           T F+A+ GGQ  DTG  A+          I  V+K A  I +H  I   V      T + 
Sbjct: 59  TIFHAQGGGQPSDTGTIALASSPSTPTFHIHQVRKLAPTI-LHMGIFAPVPHTPFPTGIQ 117

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH------- 623
           +  TID   R   S  H+A H+L  A++ +  S        + PD +    +H       
Sbjct: 118 ITQTIDVDKRILHSRLHTAGHILGLAINLLTAS------GALPPDLIDGKASHYPSAAFV 171

Query: 624 --SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVS 680
             +  I S    +I+  V++++AQNLPV       ++A +  +  +   K + D VRVV 
Sbjct: 172 EFTGLIPSTAKSAIQAKVDELVAQNLPVGIHFWTEDEARSRCSGVVGEVKGDADGVRVVK 231

Query: 681 VEYEDGGVHSSALCGGTHVSSTGE 704
           +     G   S  CGGTHV    E
Sbjct: 232 I-----GEVGSYPCGGTHVLRLAE 250


>gi|307611592|emb|CBX01274.1| threonyl tRNA synthetase [Legionella pneumophila 130b]
          Length = 637

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  +D   
Sbjct: 50  LIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVIE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++     E 
Sbjct: 109 ERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKG--LGEEYKAKIIADIPEN 166

Query: 684 EDGGVHSSA----LCGGTHVSSTG 703
           E   ++       LC G HV STG
Sbjct: 167 ESLSLYRQGDFEDLCRGPHVPSTG 190


>gi|134299469|ref|YP_001112965.1| threonyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|189083605|sp|A4J4Y7|SYT_DESRM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134052169|gb|ABO50140.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Desulfotomaculum reducens MI-1]
          Length = 635

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 17/135 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H+L  A+  +        G  I  DG  +D    +P T A+L+ IE+ +N II ++
Sbjct: 73  HSTAHVLAQAVKRLFPDAKLAIGPAIQ-DGYYYDFDVEQPFTPAQLERIEEEMNKIIKED 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHS------SALCGGT 697
           +P     ++RE+A+          K  D   ++ +++   ED  +          LC G 
Sbjct: 132 IPFKRVELSREEALEH-------FKKQDEIYKIELITDLPEDAVISCYQQGDFDDLCAGP 184

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG +  L ++S
Sbjct: 185 HVPSTGRLKSLKLMS 199


>gi|124267077|ref|YP_001021081.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
 gi|166225459|sp|A2SH07|SYT_METPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124259852|gb|ABM94846.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
          Length = 635

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVIE-NGFYYDFSYKRPFTPEDLAAIEAKMTELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V  R++ R++A+A   +  +G  Y   +       +D  ++       LC G HV 
Sbjct: 130 KDEKVERRVLPRDEAVAYFKS--IGEDYKAEIIAGIPAGQDVSLYREGRFEDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|150007326|ref|YP_001302069.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262382100|ref|ZP_06075238.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298375313|ref|ZP_06985270.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_19]
 gi|149935750|gb|ABR42447.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262297277|gb|EEY85207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298267813|gb|EFI09469.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_19]
          Length = 153

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N   I     + D   ++  +
Sbjct: 1   MKQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKNAH-IERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E+A      + L    +D +R+V +     G 
Sbjct: 60  AEVMAEVEKKINEVIDRHLPVTIEFMPKEEAGDIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEI 705
           + +  C G+HV++T EI
Sbjct: 115 YDACACIGSHVANTSEI 131


>gi|302815607|ref|XP_002989484.1| hypothetical protein SELMODRAFT_428079 [Selaginella moellendorffii]
 gi|300142662|gb|EFJ09360.1| hypothetical protein SELMODRAFT_428079 [Selaginella moellendorffii]
          Length = 236

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 29/229 (12%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVER--GI 564
           ++V +V D+T  Y + GGQ GD G   ++      Q+ D + K  G+  H+ + E     
Sbjct: 18  ERVAIVSDRTILYPQGGGQPGDRGSISSLNGDTTFQVQDTRMK-NGVVYHYGVFEPSDST 76

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 + L ++ Q R   S  H+A HL+   +  ++G  +       +P+G   +   +
Sbjct: 77  FEAGQEVSLRVESQRRELHSRLHTAGHLIDVCMK-LVGRTLEPAKGNHSPEGAFVEYIGA 135

Query: 625 KPITSAELKS----IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---- 676
            P  S E++S    ++  ++ +IA    V   ++  ++     AA L G    D +    
Sbjct: 136 IP--SGEIESTRVALQKEIDRLIASGASVNASVLPYDE-----AAGLCGGSLPDYISKDS 188

Query: 677 --RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             R+V +     G H+   CGGTHV     +  L  V++  ++ G+ ++
Sbjct: 189 SPRIVRI-----GDHTGCPCGGTHVDDVSSLTGLK-VTQIRVKKGVTKV 231


>gi|303237246|ref|ZP_07323816.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella disiens FB035-09AN]
 gi|302482633|gb|EFL45658.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella disiens FB035-09AN]
          Length = 156

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+ +    H+A HLL+  +  I G+  S N            +   KP+   E K+IED
Sbjct: 10  HNKEEFPPAHTAEHLLNQLMGRIFGAERSNNAHIERKKSKMTFLLDHKPLRKEE-KAIED 68

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N +I  ++P+   + +R +     +   L    ++++R+V +     G +    C G 
Sbjct: 69  EMNRLIELDMPITYELADRNELPEGVSLDRLPEDASEKIRLVRI-----GDYDVCPCIGK 123

Query: 698 HVSSTGEI 705
           HV ST +I
Sbjct: 124 HVRSTAQI 131


>gi|331695255|ref|YP_004331494.1| Threonyl/alanyl tRNA synthetase SAD [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949944|gb|AEA23641.1| Threonyl/alanyl tRNA synthetase SAD [Pseudonocardia dioxanivorans
           CB1190]
          Length = 247

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 18/217 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D++ FY   GGQ  D G  +  G+R +I     + + +++  A  +  +  T  ++ 
Sbjct: 38  IVLDRSAFYPGGGGQPPDEGVLLWGGVRTRIVGTV-RGDDLYLVPAEGD-PVPATGTAVR 95

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID + R  L   HS  H+L   +    G+ V+  G  + P   R D     P    + 
Sbjct: 96  GAIDDERRTGLMRTHSGLHVLTAVVFRDFGAKVT--GGNMEPLTARMDF--DLPQVPPDF 151

Query: 633 KS-IEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDG 686
           K  + +  N  IA + P+  R++ R +A A       AA LL     + +RVV ++    
Sbjct: 152 KDRVAEAANAEIALDRPIAARLLPRAEAFAIPNLVRTAADLLPEDL-ETIRVVDID---- 206

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           G+   A  GGTHV+ST  I  + +V   +   G RR+
Sbjct: 207 GLDQQA-DGGTHVASTKLIGRVEVVKVENKGRGFRRL 242


>gi|167839951|ref|ZP_02466635.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 239

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 33/205 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V   Q PFY   GGQL D G    +G    +T   +   G+++  A     +   + S  
Sbjct: 27  VRLSQHPFYPGGGGQLPDLGTVQWEGGVETVTGFSEDEGGLWIELANGVEIVGHVQSS-- 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI----- 627
             +D   RR +   H+  H+L+  +      +   +G+ +T  G++ +   +  I     
Sbjct: 85  --VDAAFRRSMRELHTDLHVLNALV------YRDFDGALVT--GVQMNADRTARIDFDLP 134

Query: 628 --TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVRV 678
              +  L+++E  +ND++ ++LPV TR +   D  A   + LL ++        +  VR+
Sbjct: 135 DADNDRLRALEAELNDVVHRDLPVRTRYVPLAD--AQQESGLLRSRSVAPPPTADGLVRI 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTG 703
           V ++    G+ S A CGGTH++STG
Sbjct: 193 VEID----GLDSQA-CGGTHLASTG 212


>gi|229543582|ref|ZP_04432642.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328002|gb|EEN93677.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 640

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  + G+     G  I  +G  +D+     +T  +L  IE  +  I+A
Sbjct: 74  LRHSTAHLMAQAVRRLYGNVKFGVGPAIE-NGFYYDMDLEVSLTPEDLPKIEKEMKKIVA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSST 702
           +NL +V ++++R++A    A      +  D +    V+V YE G      LC G HV ST
Sbjct: 133 ENLEIVRKVVSRDEARKMFAHDEYKLELIDAIPDETVTV-YEQGEF--VDLCRGVHVPST 189

Query: 703 GEI 705
           G+I
Sbjct: 190 GKI 192


>gi|289208097|ref|YP_003460163.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943728|gb|ADC71427.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 638

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D  + +  T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLMAQAVKQLFPEAQVTIGPTIE-NGFYYDFAYDRGFTPEDLEKIEKRMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+LPV   +M+R++A+       +G +Y   +     + E+  ++       LC G H+ 
Sbjct: 130 QDLPVERSLMDRDEAVKYFRD--MGEEYKAEIIASIPQGENISLYKQGDFVDLCRGPHIP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|13924628|gb|AAK49079.1|AF258287_1 alanyl-tRNA synthetase [Brassica napus]
          Length = 106

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV   +V  RV+ 
Sbjct: 1   AEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVKAEDVTNRVDN 60

Query: 763 IWEEYR 768
           + EE R
Sbjct: 61  LLEELR 66


>gi|13924622|gb|AAK49077.1|AF258285_1 alanyl-tRNA synthetase [Brassica rapa]
          Length = 103

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI  + I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV   +V  RV+ 
Sbjct: 1   SEIRAVKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVKAEDVTNRVDN 60

Query: 763 IWEEYR 768
           + EE R
Sbjct: 61  LLEELR 66


>gi|254462531|ref|ZP_05075947.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206679120|gb|EDZ43607.1| alanyl-transfer RNA synthetase domain protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 242

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 42/213 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-----KAEGIFVHHAIVERGILRT 567
           V+ DQ+ FYA  GGQ GD+G  + +   L I    K       +   V    V+   + T
Sbjct: 28  VILDQSIFYATGGGQPGDSGMMMWNDNHLPIATCVKVKGREDTQLALVPAEPVQLPPVGT 87

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           ++S  L++D++ R     +H   H   H LS ++   VS     +    L FD+    P 
Sbjct: 88  QVS--LSLDWERRH----SHMRVHTALHLLSVVISLPVSGGSISVGKGRLDFDM----PE 137

Query: 628 TSAELKSIEDNVNDIIAQNL---------------PVVTRIMNREDAIASGAAALLGTKY 672
              +  ++E ++N +I  +                P + + M+ +  + SG   L+  + 
Sbjct: 138 APEDKDALEASLNRLIELDYVVSEGWISEEELRANPTLVKTMSVQPPMGSGRVRLV--RI 195

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            D  R + ++           CGGTHV+ T EI
Sbjct: 196 GDDTRQIDLQP----------CGGTHVARTSEI 218


>gi|319943475|ref|ZP_08017757.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743290|gb|EFV95695.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 636

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ +A+  +        G  I  +G  +D  + +P T  +L +IE  ++++  
Sbjct: 71  IRHSTAHLMAYAVQDLFPEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLAAIEKRMHELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHV 699
            +  VV    +R++A+    +  +G KY   + + S+  E+G           LC G HV
Sbjct: 130 LDETVVREEWDRQEAVKYFES--IGEKYKAEI-IASIPAEEGITFYREGRFVDLCRGPHV 186

Query: 700 SSTGEIMLLYIV 711
            STG++ +  ++
Sbjct: 187 PSTGKLKVFKLM 198


>gi|34763243|ref|ZP_00144205.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887096|gb|EAA24205.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 375

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 113/260 (43%), Gaps = 37/260 (14%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I +   +++ +          +  I+++ +
Sbjct: 11  ISDRTYEIL--NSPFYTDGKGGQLGDRG-TISNANIIEVKE----------NLVILDKDL 57

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
              E +    ID + R  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 58  KDGEYTYF--IDEKRREDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   ++ +E+ VN+ I  ++ V   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEIIEKLEELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T +I +  I++  +I+    R   + G+RA++    
Sbjct: 167 FIKI----GDIDICA-CAGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVV 757
           + + +K L +        ++
Sbjct: 222 KHDIIKKLTNIFSCKDDEIL 241


>gi|307321522|ref|ZP_07600917.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306892829|gb|EFN23620.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
          Length = 660

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 578 QNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +++R L  I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---- 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 124 KKMREIIARNKPFTKEVWSRDRAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEI 705
           LC G H++STG+I
Sbjct: 182 LCRGPHMASTGQI 194


>gi|150396275|ref|YP_001326742.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166225503|sp|A6U8C7|SYT_SINMW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150027790|gb|ABR59907.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 660

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 578 QNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +++R L  I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---- 692
             + +IIA+N P    + +R+   A    A+ G  Y   +     E +D  ++       
Sbjct: 124 KRMREIIARNKPFTKEVWSRDK--AKEVFAVKGESYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEI 705
           LC G H++STG+I
Sbjct: 182 LCRGPHMASTGQI 194


>gi|15965178|ref|NP_385531.1| threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|22654127|sp|Q92QB0|SYT_RHIME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15074358|emb|CAC46004.1| Probable threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
          Length = 661

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 578 QNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +++R L  I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 66  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---- 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 125 KKMREIIARNKPFTKEVWSRDRAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFD 182

Query: 693 LCGGTHVSSTGEI 705
           LC G H++STG+I
Sbjct: 183 LCRGPHMASTGQI 195


>gi|313680957|ref|YP_004058696.1| threonyl/alanyl tRNA synthetase sad [Oceanithermus profundus DSM
           14977]
 gi|313153672|gb|ADR37523.1| Threonyl/alanyl tRNA synthetase SAD [Oceanithermus profundus DSM
           14977]
          Length = 397

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 110/271 (40%), Gaps = 36/271 (13%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIF-VHHAIVERGIL 565
           G +  V  D+T FY  +GGQ  DTG  +G G+R L + + +K  + I  V  A +E G  
Sbjct: 26  GGRFLVELDRTLFYPTSGGQPHDTGT-LG-GVRVLDVFEPEKHGQRIVHVLEAPLEEG-- 81

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHAL------STILGSHVSQNGSCITPDGLRF 619
               ++   ID+  R +    H+  H+L  A       +TI    VS  G  I  D   F
Sbjct: 82  ---AAVEGKIDWTRRYRHMQRHTGQHVLSQAFLRAAQWNTIA---VSLAGPEIHID---F 132

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDR 675
           DV          L   E   N  +  NL V  R       +      LL      K    
Sbjct: 133 DVWPGPGAAEEVLAEAEALANWAVYANLAVSAR------EVPEAQVPLLPLRRMPKVRGS 186

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRVV +E  D      A CGGTH+ ST E   + ++     +    R+ A TG  A    
Sbjct: 187 VRVVQIEDWD-----LAPCGGTHLRSTAEAGPIKLLGFEKGKKKTIRVYARTGWEALEDY 241

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
             +   LK+LA        +V  RV+++ +E
Sbjct: 242 AAKHRTLKALAGRFSAGVFDVPERVQKLEDE 272


>gi|237739802|ref|ZP_04570283.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423410|gb|EEO38457.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 375

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 37/250 (14%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S    EV+   +PFY +  GGQLGD G  I +     I +V+   E I +    +E G 
Sbjct: 11  ISDMTYEVL--NSPFYVDGKGGQLGDRG-TIAEA---NIVEVK---ENIVILDKNLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                    +I+ + +  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 61  -----EYTYSINEKRQEDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
                 K I+   ++ +E+ VN  I  ++ V   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEVIEKLEELVNKDIKADILVEEEIYTNEEAHKFENLRKAIKEKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G V   A C G HVS T EI +  I++  +I+    R   + G RA++    
Sbjct: 167 FIKI----GDVDICA-CAGFHVSRTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYNK 221

Query: 738 QDEKLKSLAS 747
           + + +K L +
Sbjct: 222 KHDIIKKLTN 231


>gi|307243241|ref|ZP_07525412.1| threonine/alanine tRNA ligase second additional domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493369|gb|EFM65351.1| threonine/alanine tRNA ligase second additional domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 464

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 57/310 (18%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVH 556
           Q  ++   + G K+ +VFD+T F+   GGQ  D G  I D GI+  I  + +K EG+  H
Sbjct: 39  QARLLSVDIVGGKIYMVFDRTLFFPGGGGQAQDGGYVIDDSGIKFDICGINEK-EGLIYH 97

Query: 557 HA----------IVER-GILRT-----EMSLV---------------LTIDYQNRRQLSI 585
                       I  R GIL +     ++S++               + +++++R     
Sbjct: 98  EVRMAKDGLESLITSRQGILDSMDQAEKVSMIEDYIGAKLKADPIFRMVLNWEHREDYMH 157

Query: 586 NHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            HS  H+L      +     LG H+ ++ S +  +G  FD           +K +E   N
Sbjct: 158 QHSGQHVLSGVFYKLFSRNTLGLHIGKDLSQLDIEG-EFD--------HDMVKEVERYAN 208

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I++Q + +   +++R+    +     L     D +R++ +    G +  +A C G H +
Sbjct: 209 LIVSQEIKIDNFVLDRDKLEDTYTRRPLPNTSED-IRILKI----GDLDINACC-GVHST 262

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---V 757
            TG++ L+ I  +     G  R E + G+RA S+++ +DE    L      ++ N+   +
Sbjct: 263 DTGQLKLIKI-KKYYHHKGNTRFEYLVGKRAISYILDRDEYFSKLLLKYDTNEANILNAI 321

Query: 758 GRVEEIWEEY 767
           G +E+  +++
Sbjct: 322 GNLEDKKDDF 331


>gi|307309192|ref|ZP_07588863.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|306900338|gb|EFN30954.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 660

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 578 QNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +++R L  I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---- 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 124 KKMREIIARNKPFTKEVWSRDRAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEI 705
           LC G H++STG+I
Sbjct: 182 LCRGPHMASTGQI 194


>gi|74212129|dbj|BAE40227.1| unnamed protein product [Mus musculus]
          Length = 412

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 124/304 (40%), Gaps = 36/304 (11%)

Query: 476 LCQKPPI--DLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQL 528
           LCQ+     + T  V S   A     E+  +A  G+K       VV + T  + E GGQ 
Sbjct: 4   LCQRDSYAREFTTTVVSCSPA-----ELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQP 58

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I D   L++T  ++ A+      + +  G       + + +D++ R      HS
Sbjct: 59  DDRG-TINDISVLRVT--RRGAQADHFTESPLSPG-----SQVQVRVDWERRFDHMQQHS 110

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
             HL+      + G   +          +  D   S  +T+ ++ +IE +VN  I   LP
Sbjct: 111 GQHLITAVADLLFGLKTTSWELGRLRSVIELD---SPSVTAEQVAAIEQSVNQKIRDRLP 167

Query: 649 VVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V  R ++ +D  +       L   +   +RVV++E  D     S +C GTHVS+  ++ +
Sbjct: 168 VSVRELSMDDPEVEQVRGRGLPDDHAGPIRVVTIEGVD-----SNMCCGTHVSNLSDLQV 222

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + I+     +     +  + G R    +       K+L S LK         VE+  E  
Sbjct: 223 IKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCG-------VEDHVEAV 275

Query: 768 RKLQ 771
           +KLQ
Sbjct: 276 KKLQ 279


>gi|194887781|ref|XP_001976802.1| GG18657 [Drosophila erecta]
 gi|190648451|gb|EDV45729.1| GG18657 [Drosophila erecta]
          Length = 436

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 35/268 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  ++
Sbjct: 43  VICEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GSTAVHFVESPTSFEQDAEVL 96

Query: 573 LTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           LT+DYQ R      HS  HL+         +   S  LGS VS          ++    H
Sbjct: 97  LTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVSY---------IQLSTPH 147

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVS 680
              I+   L  IE   ND+I +   V   +++ E A     + A   L   +    RVV 
Sbjct: 148 L--ISRESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVR 205

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E    G+ S+ +C GTHV++  ++  + ++    ++  +  +  + G+R    L    +
Sbjct: 206 IE----GIESN-MCCGTHVTNLSQLQCIKLLYAEKVKTNV-LVHFVVGERVLVKLGEVFQ 259

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           + + L   LK   G  +  V+++ +  +
Sbjct: 260 REQQLTQALKGGPGQHLELVQKLQQNVK 287


>gi|54295556|ref|YP_127971.1| threonyl tRNA synthetase [Legionella pneumophila str. Lens]
 gi|73919803|sp|Q5WT82|SYT_LEGPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53755388|emb|CAH16884.1| Threonyl tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 637

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  +D   
Sbjct: 50  LIKEDCSLIIVTEKHEDSLEVIRHSTAHLLAQAVKALFPSAQVTIGPVIE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++     E 
Sbjct: 109 ERSFTPDDLSLIEVKMHELAKANLSITRRELPRNEAIQYFKG--LGEEYKAKIIADIPEN 166

Query: 684 EDGGVHSSA----LCGGTHVSSTG 703
           E   ++       LC G HV STG
Sbjct: 167 ESLSLYRQGDFEDLCRGPHVPSTG 190


>gi|254469513|ref|ZP_05082918.1| alanyl-transfer RNA synthetase domain protein [Pseudovibrio sp.
           JE062]
 gi|211961348|gb|EEA96543.1| alanyl-transfer RNA synthetase domain protein [Pseudovibrio sp.
           JE062]
          Length = 241

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 29/206 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS- 570
           ++ D+T FY   GGQ GD+G   + DG R+ I       +   + H   E   L   +S 
Sbjct: 28  IILDRTCFYPNGGGQPGDSGSIELEDGTRIPIATTVYSKDRTQIVHVPAEGTQLPAALSA 87

Query: 571 ---LVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDG---LRFDVTH 623
              +   +D++ R +    H+A HLL   L   + G  +S        DG   L FD+  
Sbjct: 88  GAKITAHVDWETRYKRMRVHTALHLLSVVLPFPVTGGQIS--------DGTGRLDFDI-- 137

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKY---NDRVRVV 679
             P  + + + +   + ++IA +  V    +  E+  A+ G    +  K    + RVR+V
Sbjct: 138 --PEAALDKEELTGKLQELIAGDYAVTQEWITDEELEANPGLVKTMSVKPPMGSGRVRLV 195

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI 705
            +    G       CGGTHVS T +I
Sbjct: 196 RI----GDNVDLQPCGGTHVSQTAQI 217


>gi|325265785|ref|ZP_08132472.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982768|gb|EGC18393.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 637

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+   KP T  ++K+IE+ +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPNAKMVIGPVIE-DGFYYDIAAEKPFTPEDMKAIEERMKQLIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+ +++ R + I        G  Y  R+     E  + G++       +C G HV 
Sbjct: 130 QDYDVIKKMLPRAEVIEIFKQR--GEDYKLRLVDDMPEVTEMGMYFHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|294783088|ref|ZP_06748412.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294479966|gb|EFG27743.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 375

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 37/250 (14%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S    EV+   +PFY +  GGQLGD G  I +     I +V+   E I +    +E G 
Sbjct: 11  ISDMTYEVL--NSPFYVDGKGGQLGDRG-TIAEA---NIVEVK---ENIVILDRNLEDG- 60

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
                    +I+ + +  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 61  -----EYTYSINEKRQEDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
                 K I+   ++ +E+ VN  I  ++ V   I   E+A         +  K    VR
Sbjct: 112 -----QKDISKEVIEKLEELVNKDIKADILVEEEIYTNEEAHKFENLRKAIKEKIKGDVR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G V   A C G HVS T EI +  I++  +I+    R   + G RA++    
Sbjct: 167 FIKI----GDVDICA-CAGFHVSRTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYNK 221

Query: 738 QDEKLKSLAS 747
           + + +K L +
Sbjct: 222 KHDIIKKLTN 231


>gi|301310673|ref|ZP_07216612.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 20_3]
 gi|300832247|gb|EFK62878.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 20_3]
          Length = 153

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N   I     + D   ++  +
Sbjct: 1   MKQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKNAH-IERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E A      + L    +D +R+V +     G 
Sbjct: 60  AEVMAEVEKKINEVIDRHLPVTIEFMPKEKAGGIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEI 705
           + +  C G+HV++T EI
Sbjct: 115 YDACACIGSHVANTSEI 131


>gi|54298706|ref|YP_125075.1| threonyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|73919801|sp|Q5X1H3|SYT_LEGPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53752491|emb|CAH13923.1| Threonyl tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 637

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  +D   
Sbjct: 50  LIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVIE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++     E 
Sbjct: 109 ERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKG--LGEEYKAKIIADIPEN 166

Query: 684 EDGGVHSSA----LCGGTHVSSTG 703
           E   ++       LC G HV STG
Sbjct: 167 EALSLYRQGDFEDLCRGPHVPSTG 190


>gi|90423529|ref|YP_531899.1| threonyl/alanyl tRNA synthetase, SAD [Rhodopseudomonas palustris
           BisB18]
 gi|90105543|gb|ABD87580.1| Ala-tRNA(Pro) hydrolase [Rhodopseudomonas palustris BisB18]
          Length = 240

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 28/216 (12%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG---IFVH 556
           E     ++  +  +  D+T FY + GGQ GDTG  +     L++T+  +  +    I+  
Sbjct: 20  EFSANVLAATETALALDRTCFYPQGGGQPGDTGQIVAADRVLKVTNTYRDRDNPALIWHD 79

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                 G+LR E S+   ID++ R      H   H   H L +++ + V+  G  I  D 
Sbjct: 80  CEPGPDGLLRGE-SVQGVIDWERR----YGHMRMHTCLHLLCSLIDAPVT--GCSIAADK 132

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            R D     P  + +   I   +N++I  + P V R+   E+        L       R 
Sbjct: 133 GRLDF--DLPEMTLDKDEISRRLNELIEVDHP-VRRVRATEN--------LEQVMRLTRT 181

Query: 677 RVVSVEYEDGGVHSSAL-------CGGTHVSSTGEI 705
           ++V     DG ++   +       CGGTHV+S+ EI
Sbjct: 182 KLVEAPVRDGKINLVQIADVDLQPCGGTHVASSREI 217


>gi|114319929|ref|YP_741612.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312208|sp|Q0AAL5|SYT_ALHEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114226323|gb|ABI56122.1| Ser-tRNA(Thr) hydrolase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 641

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D  + +P T  +LK+IE  + ++  
Sbjct: 71  IRHSTAHLMAQAVKELFPEAQVTIGPVIE-NGFYYDFAYKRPFTEDDLKAIEKKMEELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V   + +R++AI        G +Y   +     E+E   V+       LC G HV 
Sbjct: 130 QDFEVHREVWDRDEAIRFFLEQ--GEQYKAEIIEDLPEHETISVYKQGDFLDLCRGPHVP 187

Query: 701 STGEI 705
           +TG++
Sbjct: 188 NTGKL 192


>gi|116690299|ref|YP_835922.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           HI2424]
 gi|116648388|gb|ABK09029.1| Ala-tRNA(Pro) hydrolase [Burkholderia cenocepacia HI2424]
          Length = 243

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A + Q E + +A+    + +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAIGEDGIRL--DRTVFYPLGGGQAGDTGTLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPASGQEASVATLVPGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   +  I   +   +E  +   +    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATADAI---DRDDVERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|107023216|ref|YP_621543.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia AU
           1054]
 gi|105893405|gb|ABF76570.1| Ala-tRNA(Pro) hydrolase [Burkholderia cenocepacia AU 1054]
          Length = 243

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAE 551
           A + Q E + +A+    + +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAIGEDGIRL--DRTVFYPLGGGQAGDTGTLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPASGQEASVATLVPGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLPYAV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
               +G  +T D +R D   +  I   +   +E  +   +    PV T  I + E A   
Sbjct: 127 ----DGCSVTADYVRLDFATADAI---DRDDVERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 663 GAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                +  K      RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVD-----LQPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|322437350|ref|YP_004219562.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321165077|gb|ADW70782.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 687

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +       +G   T  G  +DV    P T  +L +IE  + +++A
Sbjct: 114 LRHSTAHVMATAILELFPETKLGHGPA-TDAGFFYDVYRETPFTEDDLAAIEKRMGEVVA 172

Query: 645 QNLPVVTRIMNREDAIASGAA--ALLGTKYNDRV----RVVSVEYEDGGVHSSALCGGTH 698
           +N   V     REDA+   AA    +   + +R       VS+ Y +GG   +  C G H
Sbjct: 173 RNDAFVKETEPREDALQEYAAEGEFMKVHFIERFTQAGEPVSL-YRNGGF--TDFCRGPH 229

Query: 699 VSSTGEIMLLYIVS 712
           V STG +    + S
Sbjct: 230 VPSTGRVKAFKVTS 243


>gi|330833973|ref|YP_004408701.1| Ala-tRNA(Pro) hydrolase [Metallosphaera cuprina Ar-4]
 gi|329566112|gb|AEB94217.1| Ala-tRNA(Pro) hydrolase [Metallosphaera cuprina Ar-4]
          Length = 237

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 23/201 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           VV D+T F+ + GG   D G  I    G    +T+ +K+ E I VH   +E  I   E  
Sbjct: 28  VVLDRTAFHPKGGGLESDNGILISKSTGKEFVVTETKKEGENI-VH--FLENPIQIEEGE 84

Query: 571 LVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR--FDVTHSKPI 627
           +V+  I++  R ++   H+A+H++     +  GS+++  G  ITP+  +  FD+      
Sbjct: 85  VVVGRINWDRRYRMMRLHTASHIISSIAFSKYGSYIT--GGNITPEYAKDDFDIED---- 138

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYE 684
             + L  I    N+I      V    ++RE+A+       L  K    V   R+V +E  
Sbjct: 139 -KSLLVDIVKEANEIARSGRNVKVFFLSREEALKIPGIVKLAEKMPPEVNIWRIVEIE-- 195

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
             G+   A  GG HV++T EI
Sbjct: 196 --GIDIQA-DGGPHVNNTSEI 213


>gi|209966088|ref|YP_002299003.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
 gi|238065118|sp|B6IV67|SYT_RHOCS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209959554|gb|ACJ00191.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
          Length = 651

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I H A H++  A+  +  G+ V+   +  T  G  +D   S+P T  +L  IE  +++I+
Sbjct: 71  IRHDAAHIMAEAVQALYPGTQVTIGPAIAT--GFYYDFARSEPFTPDDLVKIEAKMHEIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGG 696
             + P    +  R+DAI    +  +G KY  ++         +++ Y  G  +   LC G
Sbjct: 129 NADAPFTREVWKRDDAIEHFRS--IGEKYKAQIIEDLPATETITI-YRQGRWYD--LCRG 183

Query: 697 THVSSTGEI 705
            H+ STG++
Sbjct: 184 PHLPSTGKV 192


>gi|119572225|gb|EAW51840.1| alanyl-tRNA synthetase, isoform CRA_c [Homo sapiens]
          Length = 72

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 5  SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGM 43
          S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM
Sbjct: 8  SEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGM 46


>gi|262374878|ref|ZP_06068112.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309891|gb|EEY91020.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 640

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE+ +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPEAKMVIGPVIE-EGFYYDIWMPRPFTLDDMAAIEERMKKLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R++ IA   A   G +Y  R+     E    G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRDEVIAEFTAR--GEEYKLRLIADMPEETQMGLYYHQDYLDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T     L     + I     R +A   Q  R +     +K K LA+++K
Sbjct: 188 NTK---FLKSFKLTKISGAYWRGDAKNEQLQRIYGTAWADK-KQLAAYVK 233


>gi|315646839|ref|ZP_07899954.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315277769|gb|EFU41093.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 635

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 13/133 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  HL+  A+  + GS     G   +  DG  +D+     I++ +L +IE  +  I+ +
Sbjct: 74  HSTAHLMAQAVKRLYGSKPVYLGVGPVVEDGFYYDMDLEHSISTDDLIAIEREMQQIVQE 133

Query: 646 NLPVVTRIMNREDA------IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +LP++ R ++RE+A             +LG    +   ++SV YE G      LC G H+
Sbjct: 134 DLPIIRREISREEAEQLFSDDPYKRELILGLPEEE---IISV-YEQGEF--IDLCRGPHL 187

Query: 700 SSTGEIMLLYIVS 712
            STG I    ++S
Sbjct: 188 PSTGRIKAFKLMS 200


>gi|255320853|ref|ZP_05362027.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262380254|ref|ZP_06073409.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302022|gb|EET81265.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298448|gb|EEY86362.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 640

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE+ +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPEAKMVIGPVIE-EGFYYDIWMPRPFTLDDMAAIEERMKKLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+ ++  R++ IA   A   G +Y  R+     E    G++       +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIAEFTAR--GEEYKLRLIADMPEETQMGLYYHQDYLDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T     L     + I     R +A   Q  R +     +K K LA+++K
Sbjct: 188 NTK---FLKSFKLTKISGAYWRGDAKNEQLQRIYGTAWADK-KQLAAYIK 233


>gi|239905697|ref|YP_002952436.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259516431|sp|C4XL11|SYT_DESMR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239795561|dbj|BAH74550.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 647

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 13/135 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+ T+  S     G  I  +G  +D  + +P T  +L++IE  +   IA
Sbjct: 71  IRHSAAHIMAEAVKTLFPSVQVTIGPAIE-NGFYYDFAYERPFTPDDLEAIEAEMQKSIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-------VVSVEYEDGGVHSSALCGGT 697
            N P     + + DA A  AA   G  Y   +         VS+ Y  G    + LC G 
Sbjct: 130 ANQPFSCTYVPKADAKALFAAQ--GESYKLEIMDENIVGDTVSL-YRHGTF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIVS 712
           HV +TG +  + ++S
Sbjct: 185 HVPTTGLVRAVKLLS 199


>gi|260361823|ref|ZP_05774839.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|308114473|gb|EFO52013.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 79

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG+++L  ++ +K   ++  VT+DL+ +  A DL ++ A+ +GG GGG RP MAQ+GG +
Sbjct: 3   SGVVLLANVTDDK-VGLIAGVTKDLVGKVKAGDLVKMVAEQVGGKGGG-RPDMAQAGGTD 60

Query: 882 GNKADQAIAGVASFLKK 898
            +   +AI  V  +L++
Sbjct: 61  VSALPEAIKTVQPWLEE 77


>gi|56751513|ref|YP_172214.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|73919835|sp|Q5N1X6|SYT_SYNP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56686472|dbj|BAD79694.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 607

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G   T  G  +D    +P T A+LK+I+  +  II 
Sbjct: 28  IRHTMSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDTPEPFTEADLKAIKKEMVKIIQ 86

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSS 701
           Q LPVV   ++RE+A     A  LG  Y   +       +     G     LC G HV +
Sbjct: 87  QKLPVVREEVSREEAQQRIEA--LGEPYKLEILQGLTEPITLYHLGDRWWDLCAGPHVET 144

Query: 702 TGEI 705
           T E+
Sbjct: 145 TAEL 148


>gi|302762474|ref|XP_002964659.1| hypothetical protein SELMODRAFT_406072 [Selaginella moellendorffii]
 gi|300168388|gb|EFJ34992.1| hypothetical protein SELMODRAFT_406072 [Selaginella moellendorffii]
          Length = 256

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 29/229 (12%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVER--GI 564
           ++V +V D+T  Y + GGQ  D G   ++      Q+ D + K  G+  H+ + E     
Sbjct: 38  ERVAIVSDRTILYPQGGGQPADRGSISSLNGDTTFQVQDTRMK-NGVVYHYGVFEPSDST 96

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 + L ++ Q R   S  H+A HL+   +  ++G  +       +P+G   +   +
Sbjct: 97  FEAGQEVTLRVESQRRELHSRLHTAGHLIDVCMK-LVGRTLEPAKGNHSPEGAFVEYIGA 155

Query: 625 KPITSAELKS----IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---- 676
            P  S E++S    ++  ++ +IA    V   +++ ++     AA L G    D +    
Sbjct: 156 IP--SGEIESTRVALQKEIDRLIASGASVNASVLSYDE-----AAGLCGGSLPDYISKDS 208

Query: 677 --RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             R+V +     G H+   CGGTHV     +  L  V++  ++ G+ ++
Sbjct: 209 SPRIVRI-----GDHTGCPCGGTHVDDVSSLTGLK-VTQIRVKKGVTKV 251


>gi|163790751|ref|ZP_02185177.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873931|gb|EDP68009.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 645

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D+++  Q+ + HS  HL+ +AL  +        G  I+  G  +D     PIT  +
Sbjct: 61  IITPDHEDALQI-LRHSTAHLMANALRRLYPDIKFGVGPAIS-TGFYYDTDSEAPITDED 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  IE  +  I+ +N P++ + + RE+A+           Y   +     E E   V+  
Sbjct: 119 IPKIEAEMMAIVKENNPIIRKEVTREEAL----EIFKDDPYKVELITNLPESEAITVYDQ 174

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG I +  ++S
Sbjct: 175 GDFVDLCRGVHVPSTGRIQVFKLLS 199


>gi|157693298|ref|YP_001487760.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157682056|gb|ABV63200.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 646

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 20/140 (14%)

Query: 585 INHSATHLLHHALSTILGS--HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + HS  HLL  A+  + G   HV      +  +G  +DV     IT  +L  IE  +  I
Sbjct: 74  MRHSTAHLLAQAIKRLYGKEHHVQFGVGPVIENGFYYDVDIDVAITPEDLPKIEKEMKKI 133

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSA 692
           I  NLP+    ++REDA     A        D++++  +E          YE G      
Sbjct: 134 INSNLPIERIEVSREDAKKRFEAI------GDQLKLELLEAIPEGEAVTIYEQGEFFD-- 185

Query: 693 LCGGTHVSSTGEIMLLYIVS 712
           LC G H+ STG+I    ++S
Sbjct: 186 LCRGIHLPSTGKIKEFKLLS 205


>gi|21450213|ref|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculus]
 gi|125987703|sp|Q3THG9|AASD1_MOUSE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA deacylase alaX; Short=AlaX;
           Short=AlaXp-II; AltName: Full=Alanyl-tRNA synthetase
           domain-containing protein 1
 gi|13543069|gb|AAH05711.1| Alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|122889672|emb|CAM14335.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|148702091|gb|EDL34038.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 412

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 124/304 (40%), Gaps = 36/304 (11%)

Query: 476 LCQKPPI--DLTNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQL 528
           LCQ+     + T  V S   A     E+  +A  G+K       VV + T  + E GGQ 
Sbjct: 4   LCQRDSYAREFTTTVVSCSPA-----ELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQP 58

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I D   L++T  ++ A+      + +  G       + + +D++ R      HS
Sbjct: 59  DDRG-TINDISVLRVT--RRGAQADHFTESPLSPG-----SQVQVRVDWERRFDHMQQHS 110

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
             HL+      + G   +          +  D   S  +T+ ++ +IE +VN  I   LP
Sbjct: 111 GQHLITAVADLLFGLKTTSWELGRLRSVIELD---SPSVTAEQVAAIEQSVNQKIRDRLP 167

Query: 649 VVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V  R ++ +D  +       L   +   +RVV++E  D     S +C GTHVS+  ++ +
Sbjct: 168 VSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVD-----SNMCCGTHVSNLSDLQV 222

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + I+     +     +  + G R    +       K+L S LK         VE+  E  
Sbjct: 223 IKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCG-------VEDHVEAV 275

Query: 768 RKLQ 771
           +KLQ
Sbjct: 276 KKLQ 279


>gi|114799933|ref|YP_761871.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123027650|sp|Q0BXC2|SYT_HYPNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114740107|gb|ABI78232.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 657

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  DG  +D    +P ++ +   IE  + +I+ 
Sbjct: 71  IRHDAAHVLAQAVQELYPDTQVTIGPVID-DGFYYDFARKEPFSTDDFDKIEARMREIVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV--------RVVSVEYEDGGVHSSALCGG 696
            + P+V  ++ +++AIA+  +  LG +Y  ++          ++V Y  G      LC G
Sbjct: 130 ADYPIVREVLGKDEAIATFKS--LGEEYKAQIIDDIIPPGEQITV-YRQGKWFD--LCRG 184

Query: 697 THVSSTGEI 705
            H+ STG++
Sbjct: 185 PHLPSTGKL 193


>gi|323698513|ref|ZP_08110425.1| threonyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458445|gb|EGB14310.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 645

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 8/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  +     G  IT DG  +D  + +P T  +L++IE  +   + 
Sbjct: 71  IRHSAAHVMAEAVKKLFPTAKVTIGPAIT-DGFYYDFDYERPFTPEDLEAIEKEMLSSVG 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
            + P V  +M++ +A     A   G  Y   + +  +  ++  +++    + LC G HV+
Sbjct: 130 ADKPFVRTVMSKAEAKKMFEAK--GETYKSEI-MDDLGGDEFSIYTHGDFADLCRGPHVA 186

Query: 701 STGEIMLLYIVS 712
            TG+I    ++S
Sbjct: 187 RTGQIKAFKLLS 198


>gi|81301415|ref|YP_401623.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123769177|sp|Q31JY3|SYT_SYNE7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81170296|gb|ABB58636.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           elongatus PCC 7942]
          Length = 604

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G   T  G  +D    +P T A+LK+I+  +  II 
Sbjct: 25  IRHTMSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDTPEPFTEADLKAIKKEMVKIIQ 83

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSS 701
           Q LPVV   ++RE+A     A  LG  Y   +       +     G     LC G HV +
Sbjct: 84  QKLPVVREEVSREEAQQRIEA--LGEPYKLEILQGLTEPITLYHLGDRWWDLCAGPHVET 141

Query: 702 TGEI 705
           T E+
Sbjct: 142 TAEL 145


>gi|21674935|ref|NP_663000.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|34222753|sp|Q8KAN0|SYT_CHLTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21648164|gb|AAM73342.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 657

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D    +++   HS++HL+ HA+  +        G  I   G  +D+         +
Sbjct: 68  IITFDSPEGKEI-FWHSSSHLMAHAIEELFPGAKFGAGPAIE-QGFYYDIACEHRFNEED 125

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYNDRVRVVSVEY 683
           L++IE  + +I  +NL +    M RE AI   +          +L     D V  VSV +
Sbjct: 126 LRAIEAKMLEISKRNLSINREEMPREQAIEYFSNERKDPYKVEILEDTLKD-VPTVSVYH 184

Query: 684 EDGGVHSSALCGGTHVSSTGEI--MLLYIVSES-----SIRAGIRRIEAIT 727
           +DG    + LC G H+ STG++  +LL  +S S     S R  ++RI  IT
Sbjct: 185 QDG---FADLCSGPHLPSTGKVKAVLLTNISSSYWRGDSSRETMQRIYGIT 232


>gi|126275956|ref|XP_001386929.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
 gi|126212798|gb|EAZ62906.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Pichia
           stipitis CBS 6054]
          Length = 430

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 122/276 (44%), Gaps = 23/276 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDV-QKKAEGIFVHH 557
           ++ +EA    K  V  + T  + E GGQ  D G   + +   + +T V + K   + +  
Sbjct: 39  KVKDEAPKEIKYAVELEDTILFPEGGGQPYDKGSLTLPNNEVVHVTSVLRDKLTALHITD 98

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           A VE G   TE+++ L  D+  R  L   H+  HLL    S +  ++  +  S    + +
Sbjct: 99  APVEPG---TEVTVDL--DWDRRIDLMQQHTGQHLL----SAVFDTYKLETLSWSMGEII 149

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-- 675
            + +   + ++   +  +   VN +I + +P+   ++  +        + +   Y+    
Sbjct: 150 NY-IELPEKVSDEIVAEVNAKVNKLIFEAIPI--EVVTPDQHGGELDYSHIPDDYDLSQG 206

Query: 676 -VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R+V +     G   +  C GTH+SST +I  + ++ + S+R G  R+  I G R   +
Sbjct: 207 IIRIVKI-----GQLDANPCCGTHLSSTSQIQSMSLLHQVSVRGGHSRLYFICGTRVYKY 261

Query: 735 LMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRK 769
           L  Q E LK ++ + L      V  +V  +   YRK
Sbjct: 262 LSKQHELLKLVSGTHLSCQIEEVADKVALLNSNYRK 297


>gi|315171869|gb|EFU15886.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1342]
          Length = 660

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D++N   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHENALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|313680219|ref|YP_004057958.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
 gi|313152934|gb|ADR36785.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
          Length = 649

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 29/152 (19%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG----------SCITPDGLRFDVTH 623
           T+    R+         H L H ++  +    ++ G            +  +G  +D+  
Sbjct: 55  TVQILTRKDPEYQQLFRHTLAHVMAQAVKEFFAKKGYDPEEVKLGIGPVIENGFYYDIDA 114

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE- 682
            +PI+ A+L  IE  ++ II +NLP+   ++ RE+A+A         +  D  +   +E 
Sbjct: 115 PEPISDADLPEIEKLMHRIIKRNLPLRRYVLEREEALAR-------YRGKDPYKTELIED 167

Query: 683 ---------YEDGGVHSSALCGGTHVSSTGEI 705
                    YE  G   + LC G HV STG+I
Sbjct: 168 LPEGEEISFYEQEGF--TDLCRGPHVPSTGKI 197


>gi|227821825|ref|YP_002825795.1| threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|254783532|sp|C3MB49|SYT_RHISN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227340824|gb|ACP25042.1| ThrS; threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 661

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)

Query: 578 QNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +++R L  I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---- 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 124 KKMKEIIARNNPFSKEVWSRDKAKEVFAAK--GESYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEI 705
           LC G H++STG+I
Sbjct: 182 LCRGPHMASTGQI 194


>gi|262038762|ref|ZP_06012119.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747220|gb|EEY34702.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 636

 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 37/214 (17%)

Query: 509 QKVEVVFDQTPFYAEAGGQLG-DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           +K+E     T F       LG +T  AI DG+++  + + +K+  I +  +  E G+   
Sbjct: 12  RKIEQPMTVTEFAKTISLSLGKETIGAIIDGVQVDPSHIIEKSGSIKIITSTSEEGVA-- 69

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
                            I HSA H++  A+  +        G  I  +G  +D    KP 
Sbjct: 70  ----------------IIRHSAAHIMAQAVQKLFPGTKVTIGPVIE-NGFFYDFDPEKPF 112

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  +L  IE+ +  I+ +N       M+ ED  A    A +G  Y  +V ++    +D G
Sbjct: 113 TEEDLTKIEEEMKKIVKENYEFKRSEMSAED--AKKLFAEMGENY--KVEII----DDLG 164

Query: 688 VHSSA---------LCGGTHVSSTGEIMLLYIVS 712
           V   +         LC GTH+ STG +    ++S
Sbjct: 165 VDKVSIYQQGEFVDLCRGTHIPSTGYLKAFKLMS 198


>gi|163782015|ref|ZP_02177014.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882547|gb|EDP76052.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 641

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 12/128 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDV-THSKPITSAELKSIEDNVNDI 642
           + HS  H++  AL  + G+ V   G    T +G  +DV      IT  +L  IE+ + +I
Sbjct: 72  MRHSLAHIMAQALKELYGAEVVHLGVGPTTEEGFYYDVEVEGHRITEEDLPKIEEKMREI 131

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGG 696
           I ++ P++ + + R++AI       L  KY  D ++ +S E     Y+ G      LC G
Sbjct: 132 IKRDYPILRKELERDEAIK--LFNDLKEKYKIDIIQRISPEDVISVYQQGDFID--LCRG 187

Query: 697 THVSSTGE 704
            H+ STG+
Sbjct: 188 PHLPSTGK 195


>gi|325293128|ref|YP_004278992.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060981|gb|ADY64672.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 667

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPEDLPKIEKRMKEIIQ 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +RE A    AA   G  Y   +     E +D  ++       LC G H++
Sbjct: 132 RNKPFTREVWSREKAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG++
Sbjct: 190 STGQV 194


>gi|315303326|ref|ZP_07873955.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628306|gb|EFR96810.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 640

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 15/195 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  ESGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAID-SGFYYDIDTVAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSA----LCGGT 697
           + +N+P+   +++RE+AI    A  +G +Y  + +  +  + E   +++      LC G 
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDEYKLELIEAIPAD-ETVTIYTQGEFFDLCRGV 183

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG+I +  ++S
Sbjct: 184 HVPSTGKIQVFKLLS 198


>gi|296242714|ref|YP_003650201.1| threonyl/alanyl tRNA synthetase SAD [Thermosphaera aggregans DSM
           11486]
 gi|296095298|gb|ADG91249.1| Threonyl/alanyl tRNA synthetase SAD [Thermosphaera aggregans DSM
           11486]
          Length = 254

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 25/220 (11%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K  +VFD+T F+ + GGQ  DTG   G+    ++         +  H+  V  G L  + 
Sbjct: 41  KCYLVFDKTIFHPKTGGQGSDTGWVRGESFEFRVEKALMVGN-VVAHYGRVVGGELPVKG 99

Query: 570 SLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDG-LRFDVTHSKP 626
           S V L +D++ R +    H+A H+L +A+  +   HV+        PD  + ++V H+  
Sbjct: 100 SPVTLELDWEPRYRAMRLHTAGHILDYAVMRVYEGHVNTLEARHSPPDAYIEYEVKHASE 159

Query: 627 ITSAEL-----KSIED--NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
             + E+     + +E+   V         + T+I N        A  L       + R+V
Sbjct: 160 KIAEEILREAARIVEEARKVRAFWVSWEELSTKIYN--------APNLQRLPRTSKYRIV 211

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRA 718
            +E    GV++   C GTHVS+T E+  + +V  E ++R 
Sbjct: 212 EIE----GVNAIP-CTGTHVSNTREVGRVELVRLEETVRG 246


>gi|52842920|ref|YP_096719.1| threonyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52630031|gb|AAU28772.1| threonyl tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 646

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  +D   
Sbjct: 59  LIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVIE-DGFYYDFAF 117

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++     E 
Sbjct: 118 ERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKD--LGEEYKAKIIADIPEN 175

Query: 684 EDGGVHSSA----LCGGTHVSSTG 703
           E   ++       LC G HV STG
Sbjct: 176 EALSLYRQGDFEDLCRGPHVPSTG 199


>gi|194017082|ref|ZP_03055694.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010950|gb|EDW20520.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 646

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%)

Query: 585 INHSATHLLHHALSTILGS--HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + HS  HLL  A+  + G   HV      +  +G  +DV     IT  +L  IE  +  I
Sbjct: 74  MRHSTAHLLAQAIKRLYGKEHHVQFGVGPVIENGFYYDVDIDVAITPEDLPKIEKEMKKI 133

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSA 692
           I  NLP+    ++RE+A     A        D++++  +E          YE G      
Sbjct: 134 INSNLPIERIEVSREEAKKRFEAI------GDQLKLELLEAIPEGEAVTIYEQGEFFD-- 185

Query: 693 LCGGTHVSSTGEIMLLYIVS 712
           LC G H+SSTG+I    ++S
Sbjct: 186 LCRGIHLSSTGKIKEFKLLS 205


>gi|317403269|gb|EFV83787.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 650

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + +R+DA+       +G KY   +       E   ++       LC G HV 
Sbjct: 135 KDEVVTREVWSRDDAVEFFKG--IGEKYKAEIIASIPSNEPLSLYREGEFIDLCRGPHVP 192

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 193 STGKLKVFKLM 203


>gi|296536619|ref|ZP_06898695.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263053|gb|EFH09602.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 660

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   ++P T  +   IE  + +IIA
Sbjct: 71  IRHDAAHVLAEAVQELFPGTQVTIGPAIE-NGFYYDFARNEPFTPEDFPKIEAKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGGTH 698
           +N      +  RE AIA   A   G +Y  + +R + V+     Y  G      LC G H
Sbjct: 130 RNAAFQREVWPREQAIAFFEAK--GERYKAELIRDLPVDVPISIYRQG--EWLDLCRGPH 185

Query: 699 VSSTGEI 705
           + STG+I
Sbjct: 186 MRSTGDI 192


>gi|70733467|ref|YP_263242.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68347766|gb|AAY95372.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 629

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  +  S     G  I  DG  +D  H +P T+ +L+ IE  ++ + A
Sbjct: 71  LRHSCAHLLAMAVKQLFPSAQVAIGPVIE-DGFFYDFAHERPFTTEDLELIEARMHSLAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGGTH 698
            N  V  R ++RE A+   A    G  Y  + +R +  +     Y  G      LC G H
Sbjct: 130 TNHSVRRRELSREQALQHFADQ--GEHYKVELIRDLPPDAVLSLYRQGDFED--LCRGPH 185

Query: 699 VSSTGEI 705
           + STG++
Sbjct: 186 LRSTGQL 192


>gi|332179059|gb|AEE14748.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 606

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL  A+  +        G  I  +G  +D+   +P T  +L+ IE  + +I  
Sbjct: 39  LRHSAAHLLAQAVKELFPETKLAIGPSIE-NGFYYDIYRKEPFTPEDLEIIEKKMKEIAQ 97

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++L +    + +EDAI   +   L   Y   + +  +  +D  ++       LC G H+S
Sbjct: 98  RDLEITKMCLKKEDAIKLFSD--LKEDYKLEL-IKDIPDDDVCIYKQGNFIDLCRGPHLS 154

Query: 701 STGEI 705
           STG+I
Sbjct: 155 STGQI 159


>gi|298251913|ref|ZP_06975716.1| Alanyl-tRNA synthetase, class IIc [Ktedonobacter racemifer DSM
           44963]
 gi|297546505|gb|EFH80373.1| Alanyl-tRNA synthetase, class IIc [Ktedonobacter racemifer DSM
           44963]
          Length = 241

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 19/207 (9%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           AVSG   EV  D T FY   GGQ+ D G    +    Q   +        V H + +   
Sbjct: 22  AVSGD--EVALDATIFYPGGGGQMADRGLLSWNQGANQAHVISISNRNGTVWHTL-DYIP 78

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
            + E  +  +ID+  R +    H+A  LL   +    G  V+  G  I PD  R D    
Sbjct: 79  PKPETEVTESIDWNFRYRSMRTHTAFLLLCSVIWREFGIQVT--GGQIYPDRARMDFALE 136

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRV 678
             +    +  +E  VN +IA + P+ T ++ RE A++   +AL+  + N      D VR+
Sbjct: 137 Y-LEKDRIAELEQQVNTLIAADYPIHTYMLPREKALS--LSALVRARINQLPPHLDEVRM 193

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEI 705
             V   D  V      GGT V+ T EI
Sbjct: 194 AEVVGFDVQVD-----GGTLVNHTREI 215


>gi|289434839|ref|YP_003464711.1| hypothetical protein lse_1474 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171083|emb|CBH27625.1| thrS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 640

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 15/195 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAFSISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAID-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSA----LCGGT 697
           + +N+P+   +++RE+AI    A  +G +Y  + +  +  + E   +++      LC G 
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDEYKLELIEAIPAD-ETVTIYTQGEFFDLCRGV 183

Query: 698 HVSSTGEIMLLYIVS 712
           HV STG+I +  ++S
Sbjct: 184 HVPSTGKIQVFKLLS 198


>gi|308067332|ref|YP_003868937.1| Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
 gi|305856611|gb|ADM68399.1| Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
          Length = 637

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  HLL  AL  I G    + G   +   G  +D+    P++  +L  IE  +  I  +
Sbjct: 74  HSTAHLLAQALKRIYGEKNVKLGIGPVIDSGFYYDIDIENPLSVDDLAKIEKEMTKIAQE 133

Query: 646 NLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           NLP+  R+++RE+A          L      D      +   D G     LC G H+ ST
Sbjct: 134 NLPITRRVVSREEATRIFGELEDPLKLELIRDLPEEAEITIYDQGEFFD-LCRGPHLPST 192

Query: 703 GEIMLLYIVS 712
           G I    ++S
Sbjct: 193 GRIKAFKLLS 202


>gi|258515613|ref|YP_003191835.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779318|gb|ACV63212.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 634

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 13/133 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L  A+  +        G  I  DG  +D       T A+++ IE  +N II +N
Sbjct: 73  HSSSHVLAQAVQRLFPGTKLAIGPAIK-DGFYYDFDSEHKFTPADMEKIEAEMNKIIKEN 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-----NDRV--RVVSVEYEDGGVHSSALCGGTHV 699
            P     ++R +AI       L  KY     ND     V+S  YE GG     LC G HV
Sbjct: 132 QPFKRFELSRAEAIDKFTD--LDEKYKVELINDLPGDAVISC-YEQGGW--CDLCAGPHV 186

Query: 700 SSTGEIMLLYIVS 712
            STG +  + + S
Sbjct: 187 PSTGSLKAVKLTS 199


>gi|291460058|ref|ZP_06599448.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417399|gb|EFE91118.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 626

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 6/171 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H+L  A+  + G  V         DG  +D    +P+T    K IED + +II + 
Sbjct: 12  HSLAHILAKAVIELYGKDVQYAIGPEVEDGCYYDFVFPRPVTEENFKEIEDKMREIIRRK 71

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSSTG 703
            P   R ++R++A+          +  + +    V+S  Y   G     LC G HV ++ 
Sbjct: 72  EPWTRRELSRKEALELFKDQRFKKEIIEDLPEDAVISAYY--TGDDFVDLCRGPHVENSK 129

Query: 704 EIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQ 753
           E++      +S+  A  R  E     QR   +     E LK+   F+K +Q
Sbjct: 130 ELLNAAFQIKSTSGAYWRGDEHRDQLQRIYLYAFPDKEALKAHLKFVKEAQ 180


>gi|226941673|ref|YP_002796747.1| threonyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|254783525|sp|C1DDA6|SYT_LARHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226716600|gb|ACO75738.1| Syt [Laribacter hongkongensis HLHK9]
          Length = 633

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  LRHSTAHLLACAVKELFPEAQVTIGPEIE-NGFYYDFSYKRPFTPEDLVAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +++PV    + R++AIA   +  +G  Y   +        V+S+ Y +G    + LC G 
Sbjct: 130 KDIPVERYELPRDEAIAYFKS--IGEAYKAEIIESIPQGEVLSL-YREGNF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|310640050|ref|YP_003944808.1| ser-tRNA(thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
 gi|309245000|gb|ADO54567.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
          Length = 637

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  HLL  AL  I G    + G   +   G  +D+    P++  +L  IE  +  I  +
Sbjct: 74  HSTAHLLAQALKRIYGEKNVKLGIGPVIDSGFYYDIDIENPLSVDDLAKIEKEMAKITQE 133

Query: 646 NLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           NLP+  R+++RE+A          L      D      +   D G     LC G H+ ST
Sbjct: 134 NLPITRRVVSREEATRIFGEMEDPLKLELIRDLPEEAEITIYDQGEFFD-LCRGPHLPST 192

Query: 703 GEIMLLYIVS 712
           G I    ++S
Sbjct: 193 GRIKAFKLLS 202


>gi|284052870|ref|ZP_06383080.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 508

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ 
Sbjct: 30  IRHTTSHVMAMAVQKLFPKAQVTIGPWIE-NGFYYDFDSPEPFTEQDLKAIKKEMVKILK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           + LPV+   ++RE+  A      LG  Y      D    +++ +   G     LC G HV
Sbjct: 89  RKLPVIREEVSREE--AQRRIETLGEPYKLEILADLTEPITIYH--LGDQWWDLCAGPHV 144

Query: 700 SSTGEI 705
            +TG+I
Sbjct: 145 ETTGDI 150


>gi|312962489|ref|ZP_07776980.1| threonyl/alanyl tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283416|gb|EFQ62006.1| threonyl/alanyl tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 242

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 94/231 (40%), Gaps = 41/231 (17%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQIT 544
           N  S+ V A+ +QG             +  + T FY   GGQ GDTG   + DG RL +T
Sbjct: 19  NAFSARVIAVSEQG-------------IALEHTLFYPTGGGQPGDTGHLTLPDGTRLDVT 65

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTI------DYQNRRQLSINHSATHLLHHALS 598
              +      V  +I+   +      L+  +      D++ R Q    H   H   H L 
Sbjct: 66  GTVRDP----VLRSIIWHQVEHCPEQLIAGVQVDAGLDWERRYQ----HMKMHTCLHLLC 117

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +I+ + V+  G  I+ D  R D     P  + +  SI  ++N +I Q  PV T  M   +
Sbjct: 118 SIIDAPVT--GCSISADKGRLDF--DLPEMTLDKDSITRDLNALIEQAHPVKTLSMAATE 173

Query: 659 AIA----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                  +   A+        VRV+ +     G+     CGGTHV +T EI
Sbjct: 174 YSTLLQITRTQAVAPPVIQGSVRVIEI----AGIDIQP-CGGTHVINTEEI 219


>gi|73919802|sp|Q5ZS05|SYT_LEGPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 637

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  +D   
Sbjct: 50  LIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVIE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++     E 
Sbjct: 109 ERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKD--LGEEYKAKIIADIPEN 166

Query: 684 EDGGVHSSA----LCGGTHVSSTG 703
           E   ++       LC G HV STG
Sbjct: 167 EALSLYRQGDFEDLCRGPHVPSTG 190


>gi|260463880|ref|ZP_05812076.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259030255|gb|EEW31535.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 658

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +   IE  + +IIA
Sbjct: 74  IRHDTAHVLAEAVQELWPGTQVTIGPVIE-NGFYYDFARNEPFTPDDFPVIEKKMREIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +RE   A    A  G +Y   +     E +D  +++      LC G H++
Sbjct: 133 RNKPFTKEVWSREQ--AKKVFADKGERYKLELIDAIPEDQDLKIYAQGDWFDLCRGPHMA 190

Query: 701 STGEI 705
           STG+I
Sbjct: 191 STGQI 195


>gi|164685973|ref|ZP_01946163.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218739|ref|YP_002305526.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|164601497|gb|EAX33218.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013001|gb|ACJ20381.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 660

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL HA+  +        G  +  DG  +D    +  T  +L+ IE+ +  +  
Sbjct: 80  IRHSAAHLLAHAVKELFPKAEVTIGPVVE-DGFYYDFAFERSFTPEDLEKIEEKMRSLAK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALC 694
            +L V  R+++R++A+       L  K  +R +V          +   Y+ G      LC
Sbjct: 139 ADLAVERRVLSRDEALT------LFKKMGERYKVEIIRDIPKEEILTAYQQGDFID--LC 190

Query: 695 GGTHVSSTG 703
            G HV  TG
Sbjct: 191 RGPHVPRTG 199


>gi|165924098|ref|ZP_02219930.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|165916454|gb|EDR35058.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 653

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL HA+  +        G  +  DG  +D    +  T  +L+ IE+ +  +  
Sbjct: 80  IRHSAAHLLAHAVKELFPKAEVTIGPVVE-DGFYYDFAFERSFTPEDLEKIEEKMRSLAK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALC 694
            +L V  R+++R++A+       L  K  +R +V          +   Y+ G      LC
Sbjct: 139 ADLAVERRVLSRDEALT------LFKKMGERYKVEIIRDIPKEEILTAYQQGDFID--LC 190

Query: 695 GGTHVSSTG 703
            G HV  TG
Sbjct: 191 RGPHVPRTG 199


>gi|161831126|ref|YP_001597175.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|161762993|gb|ABX78635.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 660

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 11/125 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL HA+  +        G  +  DG  +D    +  T  +L+ IE+ +  +  
Sbjct: 80  IRHSAAHLLAHAVKELFPKAEVTIGPVVE-DGFYYDFAFERSFTPEDLEKIEEKMRSLAK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGGTH 698
            +L V  R+++R++A+       +G +Y  + +R +  E     Y+ G      LC G H
Sbjct: 139 ADLAVERRVLSRDEALTLFKK--MGERYKVEIIRDIPKEEILTAYQQGDFID--LCRGPH 194

Query: 699 VSSTG 703
           V  TG
Sbjct: 195 VPRTG 199


>gi|325270507|ref|ZP_08137107.1| alpha-amylase [Prevotella multiformis DSM 16608]
 gi|324987083|gb|EGC19066.1| alpha-amylase [Prevotella multiformis DSM 16608]
          Length = 721

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 574 TIDY----QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           T++Y     N+ +    H+A HLL+  +  + G+  S N            +   KP   
Sbjct: 566 TVEYVLNSHNKEEFPPAHTAEHLLNQVMFRLFGAARSTNAHIERKKSKMTFILDHKPDRK 625

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA +LPV   +++R+      +   L    ++ +R+V +     G +
Sbjct: 626 EE-KAIEDEMNRLIADDLPVTFELVDRDSLPEGVSLDRLPEDASEMLRLVRI-----GDY 679

Query: 690 SSALCGGTHVSSTGEI 705
               C G HV ST +I
Sbjct: 680 DVCPCIGRHVRSTAQI 695


>gi|307294661|ref|ZP_07574503.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306879135|gb|EFN10353.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 660

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 26/193 (13%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-----TEMSLVLTIDYQN 579
           G    D   AIG G  L    +  + +G         R I+R      +++LV   D  +
Sbjct: 17  GTTPADIAAAIGPG--LAKAAIAARVDGEL-------RDIMRPLEADAQLALVTGRDEAD 67

Query: 580 RRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIED 637
             +L+  H   H+L  A+  +  G+ ++   S  T DG  +D     +P T  +L  IE 
Sbjct: 68  ALELA-RHDFAHILAEAVQALFPGTQITFGPS--TDDGFYYDFAPKDRPFTEEDLPVIEA 124

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----- 692
            + +IIA + P+   +  RED IA   A   G  +         E E+  V+ S      
Sbjct: 125 KMREIIAADKPLRREVWRREDLIARWQAE--GETFKAEWATELPEGEELTVYWSGNEWLD 182

Query: 693 LCGGTHVSSTGEI 705
           +C G H++STG++
Sbjct: 183 MCRGPHLASTGKL 195


>gi|212212292|ref|YP_002303228.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010702|gb|ACJ18083.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 660

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL HA+  +        G  +  DG  +D    +  T  +L+ IE+ +  +  
Sbjct: 80  IRHSAAHLLAHAVKELFPKAEVTIGPVVE-DGFYYDFAFERSFTPEDLEKIEEKMRSLAK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALC 694
            +L V  R+++R++A+       L  K  +R +V          +   Y+ G      LC
Sbjct: 139 ADLAVERRVLSRDEALT------LFKKMGERYKVEIIRDIPKEEILTAYQQGDFID--LC 190

Query: 695 GGTHVSSTG 703
            G HV  TG
Sbjct: 191 RGPHVPRTG 199


>gi|126726809|ref|ZP_01742648.1| hypothetical protein RB2150_02814 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703767|gb|EBA02861.1| hypothetical protein RB2150_02814 [Rhodobacterales bacterium
           HTCC2150]
          Length = 239

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 13/202 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV   + FY   GGQ GD G       R+++    K   G  V    +   +      + 
Sbjct: 28  VVLKDSIFYPTGGGQPGDNGYLTWGDNRMEVATTIKGEGGAIVLLPPMAGSLPPVGTKVT 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R  L   H+A HLL    S ++   V+  G  I  +  R D     P    + 
Sbjct: 88  QILDWPRRHALMQMHTALHLL----SVVIPLPVT--GGAIGAEKSRLDF--DMPDAPEDK 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDGGV 688
             + D++N +I Q+L V    ++  +  A+ +     ++   +   ++R+V +   D  V
Sbjct: 140 NRVLDDLNALIDQDLLVSDSWISEAELDANPSLVKTMSVAPPRGRGKIRMVQIGEGDQIV 199

Query: 689 HSSALCGGTHVSSTGEIMLLYI 710
                CGGTHV  TGEI  L I
Sbjct: 200 DYQP-CGGTHVLRTGEIGTLRI 220


>gi|86607055|ref|YP_475818.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|86555597|gb|ABD00555.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 603

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 8/126 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H+L  A+  +        G   T  G  +D  H +P T  +L+ I+  +  II 
Sbjct: 29  IRHTTSHVLAMAVQRLFPKAQVTIGPT-TDYGFYYDFDHPEPFTPEDLERIKKEMQAIIK 87

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHV 699
           + LPV+   ++RE+A     A  LG  Y   +     E E   ++        LC G HV
Sbjct: 88  KGLPVIREEVSREEARRRIEA--LGEPYKLEILDSIPEGEPITIYHLGDEWWDLCAGPHV 145

Query: 700 SSTGEI 705
            +T EI
Sbjct: 146 ENTKEI 151


>gi|53722342|ref|YP_111327.1| alanyl-tRNA synthetase related protein [Burkholderia pseudomallei
           K96243]
 gi|76817280|ref|YP_335495.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei 1710b]
 gi|126442323|ref|YP_001062866.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126458214|ref|YP_001075819.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167723888|ref|ZP_02407124.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167742862|ref|ZP_02415636.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 14]
 gi|167820033|ref|ZP_02451713.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 91]
 gi|167828416|ref|ZP_02459887.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 9]
 gi|167849866|ref|ZP_02475374.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei B7210]
 gi|167898468|ref|ZP_02485869.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167915173|ref|ZP_02502264.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 112]
 gi|226198480|ref|ZP_03794047.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507665|ref|ZP_04520380.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei MSHR346]
 gi|242312347|ref|ZP_04811364.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|254183694|ref|ZP_04890286.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|254193426|ref|ZP_04899860.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|254263376|ref|ZP_04954241.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
 gi|52212756|emb|CAH38788.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei K96243]
 gi|76581753|gb|ABA51227.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei 1710b]
 gi|126221814|gb|ABN85319.1| putative alanine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126231982|gb|ABN95395.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106a]
 gi|169650179|gb|EDS82872.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|184214227|gb|EDU11270.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|225929403|gb|EEH25423.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999870|gb|EEP49294.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei MSHR346]
 gi|242135586|gb|EES21989.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|254214378|gb|EET03763.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 33/205 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V   + PFY   GGQL D G    +G    +    +   G+++  A     +   + S  
Sbjct: 27  VRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVEIVGDVQSS-- 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT---- 628
             +D   RR +   H+  H+L+  +      +   +G+ +T  G++ +   +  I     
Sbjct: 85  --VDAAFRRAMRELHTDLHVLNALV------YRDFDGALVT--GVQMNADRTARIDFDLP 134

Query: 629 ---SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVRV 678
              +  L+++E  +ND++ ++LPV TR +   D  A  A+ LL ++        +  VR+
Sbjct: 135 DADNDRLRALEAEMNDVVRRDLPVRTRYVPLAD--AQQASGLLRSRSVAPPPTADGLVRI 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTG 703
           V ++    G+ S A CGGTH++STG
Sbjct: 193 VEID----GLDSQA-CGGTHLASTG 212


>gi|300703878|ref|YP_003745480.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071541|emb|CBJ42865.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 635

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLAAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   +  R++A+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWRRDEAVKLFEG--MGEKYKAEIIGSIPEDQEIGLYREGSFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|224827097|ref|ZP_03700194.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
 gi|224600763|gb|EEG06949.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
          Length = 214

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 30/220 (13%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           ++VV + T ++AE+GGQ  DTG  IG G R+    +  + +G  + + +    +L    +
Sbjct: 25  LDVVLEATLYFAESGGQESDTG-TIG-GYRV----LAARWQGRDLVYTLPPGHVLEEGDT 78

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + ID+  R  L   H A  ++   ++  L + + + G+ I  D  R D T  +P+T  
Sbjct: 79  VTVEIDWPRRYALMRLHFAAEIVLELVTQRLPA-IGKIGAHIGEDKARIDFTWHEPLT-- 135

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
                            P++  +M    A+    A ++ + ++D        Y +     
Sbjct: 136 -----------------PLLPELMREAQAVIDADAPIV-SAFSD--EAAERRYWEVAGFG 175

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
              CGGTH+  TGE+ +L +    ++ +G  RIE     R
Sbjct: 176 RVPCGGTHLERTGEVGVLRL-KRKNVGSGKERIEIYAAPR 214


>gi|254191172|ref|ZP_04897677.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254301829|ref|ZP_04969272.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|157811604|gb|EDO88774.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|157938845|gb|EDO94515.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 242

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 33/205 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V   + PFY   GGQL D G    +G    +    +   G+++  A     +   + S  
Sbjct: 30  VRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVEIVGDVQSS-- 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT---- 628
             +D   RR +   H+  H+L+  +      +   +G+ +T  G++ +   +  I     
Sbjct: 88  --VDAAFRRAMRELHTDLHVLNALV------YRDFDGALVT--GVQMNADRTARIDFDLP 137

Query: 629 ---SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVRV 678
              +  L+++E  +ND++ ++LPV TR +   D  A  A+ LL ++        +  VR+
Sbjct: 138 DADNDRLRALEAEMNDVVRRDLPVRTRYVPLAD--AQQASGLLRSRSVAPPPTADGLVRI 195

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTG 703
           V ++    G+ S A CGGTH++STG
Sbjct: 196 VEID----GLDSQA-CGGTHLASTG 215


>gi|154706797|ref|YP_001424763.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|154356083|gb|ABS77545.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 660

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL HA+  +        G  +  DG  +D    +  T  +L+ IE+ +  +  
Sbjct: 80  IRHSAAHLLAHAVKELFPKAEVTIGPVVE-DGFYYDFAFERSFTPEDLEKIEEKMRSLAK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALC 694
            +L V  R+++R++A+       L  K  +R +V          +   Y+ G      LC
Sbjct: 139 ADLAVERRVLSRDEALT------LFKKMGERYKVEIIRDIPKEEILTAYQQGDFID--LC 190

Query: 695 GGTHVSSTG 703
            G HV  TG
Sbjct: 191 RGPHVPRTG 199


>gi|215919162|ref|NP_820316.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|206584046|gb|AAO90830.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 660

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL HA+  +        G  +  DG  +D    +  T  +L+ IE+ +  +  
Sbjct: 80  IRHSAAHLLAHAVKELFPKAEVTIGPVVE-DGFYYDFAFERSFTPEDLEKIEEKMRSLAK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALC 694
            +L V  R+++R++A+       L  K  +R +V          +   Y+ G      LC
Sbjct: 139 ADLAVERRVLSRDEALT------LFKKMGERYKVEIIRDIPKEEILTAYQQGDFID--LC 190

Query: 695 GGTHVSSTG 703
            G HV  TG
Sbjct: 191 RGPHVPRTG 199


>gi|53716611|ref|YP_105641.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           23344]
 gi|121597260|ref|YP_990027.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei SAVP1]
 gi|124382398|ref|YP_001024050.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei NCTC
           10229]
 gi|126445649|ref|YP_001078560.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei NCTC
           10247]
 gi|134282625|ref|ZP_01769329.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|167906819|ref|ZP_02494024.1| alanyl-tRNA synthetase-related protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167923008|ref|ZP_02510099.1| alanyl-tRNA synthetase-related protein [Burkholderia pseudomallei
           BCC215]
 gi|238562041|ref|ZP_00441025.2| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|52422581|gb|AAU46151.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           23344]
 gi|121225058|gb|ABM48589.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei SAVP1]
 gi|124290418|gb|ABM99687.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126238503|gb|ABO01615.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134246182|gb|EBA46272.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|238523377|gb|EEP86816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 239

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 33/205 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V   + PFY   GGQL D G    +G    +    +   G+++  A     +   + S  
Sbjct: 27  VRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVEIVGDVQSS-- 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT---- 628
             +D   RR +   H+  H+L+  +      +   +G+ +T  G++ +   +  I     
Sbjct: 85  --VDAAFRRAMRELHTDLHVLNALV------YRDFDGALVT--GVQMNADRTARIDFDLP 134

Query: 629 ---SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVRV 678
              +  L+++E  +ND++ ++LPV TR +   D  A  A+ LL ++        +  VR+
Sbjct: 135 DADNDRLRALEAEMNDVVRRDLPVRTRYVPLAD--AQQASGLLRSRSVAPPPTADGLVRI 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTG 703
           V ++    G+ S A CGGTH++STG
Sbjct: 193 VEID----GLDSQA-CGGTHLASTG 212


>gi|311031377|ref|ZP_07709467.1| threonyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 643

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  + G+ V      +  +G  +D+   + +T  +L+ IE  +  I++
Sbjct: 74  MRHSTAHLMAQAIKRLYGN-VKLGIGPVIENGFYYDIDLEESLTPEDLQKIEKEMKKIVS 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           +NL VV   ++RE+A+          + ND +++  +           YE G      LC
Sbjct: 133 ENLDVVRVEVSREEALRR------YEELNDELKLELIRELPEGETISIYEQGEFFD--LC 184

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG+I    ++S
Sbjct: 185 RGIHVPSTGKIKEFKLLS 202


>gi|257420184|ref|ZP_05597178.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257162012|gb|EEU91972.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 645

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + K P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGKSPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|315026573|gb|EFT38505.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 660

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HSA HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSAAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|259047194|ref|ZP_05737595.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036244|gb|EEW37499.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 647

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++T D+++   + + HS  HLL HAL+ +  G H     +  T  G  +D      +T  
Sbjct: 59  IVTPDHEDALGI-LRHSTAHLLAHALTRLYPGIHFGVGPAIET--GFYYDTDMPNQLTED 115

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----EYEDG 686
            L  +E  +  I+ +N P+V R ++R++A+   A        ND  +V  +    E E  
Sbjct: 116 ALPEVEAEMMKIVKENYPIVRREVSRKEALEIFA--------NDPYKVELINGLPEDETI 167

Query: 687 GVHSSA----LCGGTHVSSTGEIMLLYIVS 712
            V+       LC G HV STG I +  ++S
Sbjct: 168 TVYQQEDFVDLCRGIHVPSTGRIQVFKLLS 197


>gi|196002279|ref|XP_002111007.1| hypothetical protein TRIADDRAFT_54509 [Trichoplax adhaerens]
 gi|190586958|gb|EDV27011.1| hypothetical protein TRIADDRAFT_54509 [Trichoplax adhaerens]
          Length = 234

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 34/202 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKA-EGIFVHHA--IVERGILRT 567
           +V D T  + + GGQ  D G     G+ +   +  VQK + E +F+ H     +  I R 
Sbjct: 36  IVVDNTVMHPQGGGQPADVGLIKNQGEDVVFHVHHVQKPSKEALFIEHVGKYSQSSIRRF 95

Query: 568 EM--SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           ++   +++ ID   RR  +  HSA HLL  AL  +  + +  +     PD    +   + 
Sbjct: 96  DVGDPVIMQIDEAKRRLHARLHSAGHLLDGALQNLGITELVGSKGYHFPDNPYVEYIGNI 155

Query: 626 PITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           P+   E  +K + +    +IA+NLPV   + ++E           G +Y   V +  V+ 
Sbjct: 156 PVEKREEIVKLLNEETTKLIAKNLPV--EVSHQE-----------GLRY---VNIAGVK- 198

Query: 684 EDGGVHSSALCGGTHVSSTGEI 705
                     CGGTHV S  EI
Sbjct: 199 --------CPCGGTHVKSLKEI 212


>gi|73919786|sp|Q83C10|SYT_COXBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 651

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL HA+  +        G  +  DG  +D    +  T  +L+ IE+ +  +  
Sbjct: 71  IRHSAAHLLAHAVKELFPKAEVTIGPVVE-DGFYYDFAFERSFTPEDLEKIEEKMRSLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALC 694
            +L V  R+++R++A+       L  K  +R +V          +   Y+ G      LC
Sbjct: 130 ADLAVERRVLSRDEALT------LFKKMGERYKVEIIRDIPKEEILTAYQQGDFID--LC 181

Query: 695 GGTHVSSTG 703
            G HV  TG
Sbjct: 182 RGPHVPRTG 190


>gi|326317187|ref|YP_004234859.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374023|gb|ADX46292.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 639

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVIE-EGFYYDIAYERPFTPEDLAAIEQRMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R++ I        G +Y  R+     + +  G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRDEVIQVFRER--GEEYKLRLVEDMPDEKAMGLYYHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T     L +   + +     R +A   Q  R +     +K K L +++K
Sbjct: 188 NT---RFLKVFKLTRVSGAYWRGDAKNEQLQRIYGTAWADK-KDLEAYIK 233


>gi|222086050|ref|YP_002544582.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
 gi|254783503|sp|B9JFG4|SYT_AGRRK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221723498|gb|ACM26654.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
          Length = 662

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTPDDLPVIEKKMREIIQ 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P   +I +RE   A    A  G +Y   +     E +D  ++       LC G H++
Sbjct: 132 RNKPFTRQIWSREK--AKQVFADKGERYKVELVDAIPEGQDLKIYYQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG+I
Sbjct: 190 STGQI 194


>gi|30248961|ref|NP_841031.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
 gi|73919810|sp|Q82VV1|SYT_NITEU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|30138578|emb|CAD84869.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 635

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 7/151 (4%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           + T+  LVL  D  +     I HS  HLL HA+  +        G  I  +G  +D ++ 
Sbjct: 51  IETDSDLVLITDKDSEGLEIIRHSCAHLLAHAVKELFPGTQVTIGPVIE-NGFYYDFSYE 109

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +P T  +L +IE  + +I  + L +  ++ +R  AI       +G  Y  ++     + E
Sbjct: 110 RPFTPEDLVAIEKRMQEISKRALKIERKVWDRSRAI--NFFKDIGEHYKAQIIESIPDNE 167

Query: 685 DGGVHSSA----LCGGTHVSSTGEIMLLYIV 711
              ++S      LC G HV  T +I +  ++
Sbjct: 168 PVSLYSQGDFTDLCRGPHVPYTSKIKVFKLM 198


>gi|313147362|ref|ZP_07809555.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313136129|gb|EFR53489.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 157

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +    G   S+N   I     + D       T  ++ +IE+ VN+ I ++
Sbjct: 22  HTAEHLLNATMVKTFGCPRSRNAH-IEKKKSKCDYELPVCPTEEQIHAIEEKVNEAINRH 80

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV    M  E A +    + L    ++ +R+V +     G + +  C G HV +T EI 
Sbjct: 81  LPVTCEFMTHEKAKSIVDLSKLPENASEMLRIVRI-----GDYDACACIGQHVENTSEIG 135

Query: 707 LLYIVS 712
           +  I+S
Sbjct: 136 IFKIIS 141


>gi|300691315|ref|YP_003752310.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299078375|emb|CBJ51025.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 635

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELYPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   +  R++A+       +G +Y   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWRRDEAVKLFEG--MGERYKAEIIASIPEDQEIGLYREGSFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|307286857|ref|ZP_07566939.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306502072|gb|EFM71358.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315156485|gb|EFU00502.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315166285|gb|EFU10302.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315169145|gb|EFU13162.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1341]
          Length = 660

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HSA HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSAAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|302815613|ref|XP_002989487.1| hypothetical protein SELMODRAFT_428080 [Selaginella moellendorffii]
 gi|300142665|gb|EFJ09363.1| hypothetical protein SELMODRAFT_428080 [Selaginella moellendorffii]
          Length = 256

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 29/229 (12%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVER--GI 564
           ++V +V D+T  Y + GGQ  D G   ++      Q+ D + K  G+  H+ + E     
Sbjct: 38  ERVAIVSDRTILYPQGGGQPADRGSISSLNGDTTFQVQDTRMK-NGVVYHYGVFEPSDST 96

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 + L ++ Q R   S  H+A HL+   +  ++G  +    +  +P+G   +   +
Sbjct: 97  FEAGQEVTLRVESQRRELHSRLHTAGHLIDVCME-LVGRTLEPAKANHSPEGAFVEYIGA 155

Query: 625 KPITSAELKS----IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---- 676
            P  S E++S    ++  ++ +IA    V   ++  ++     AA L G    D +    
Sbjct: 156 IP--SGEIESTRVALQKEIDRLIASGASVNASVVPYDE-----AAGLCGGSLPDYISKDS 208

Query: 677 --RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             R+V +     G H+   CGGTHV     +  L  V++  ++ G+ ++
Sbjct: 209 SPRIVRI-----GDHTGCPCGGTHVDDVSSLTGLK-VTQIRVKKGVTKV 251


>gi|217418597|ref|ZP_03450104.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|251766941|ref|ZP_02265440.2| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
 gi|254173946|ref|ZP_04880609.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           10399]
 gi|254200437|ref|ZP_04906802.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|254204463|ref|ZP_04910816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|254356690|ref|ZP_04972965.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|147748049|gb|EDK55124.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|147754049|gb|EDK61113.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|148025717|gb|EDK83840.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|160694993|gb|EDP84963.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           10399]
 gi|217397901|gb|EEC37916.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|243064432|gb|EES46618.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
          Length = 242

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 33/205 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V   + PFY   GGQL D G    +G    +    +   G+++  A     +   + S  
Sbjct: 30  VRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWIEFANGVEIVGDVQSS-- 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT---- 628
             +D   RR +   H+  H+L+  +      +   +G+ +T  G++ +   +  I     
Sbjct: 88  --VDAAFRRAMRELHTDLHVLNALV------YRDFDGALVT--GVQMNADRTARIDFDLP 137

Query: 629 ---SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-------NDRVRV 678
              +  L+++E  +ND++ ++LPV TR +   D  A  A+ LL ++        +  VR+
Sbjct: 138 DADNDRLRALEAEMNDVVRRDLPVRTRYVPLAD--AQQASGLLRSRSVAPPPTADGLVRI 195

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTG 703
           V ++    G+ S A CGGTH++STG
Sbjct: 196 VEID----GLDSQA-CGGTHLASTG 215


>gi|115375454|ref|ZP_01462714.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367497|gb|EAU66472.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 37/150 (24%)

Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I H A HL+  A+  +  G+ V+   +  T +G  +D    KP T  +L+ IE   N  I
Sbjct: 49  IRHDAAHLVASAVQRLFPGTQVTIGPA--TEEGFYYDFFREKPFTPEDLEKIEAEANAEI 106

Query: 644 AQNLPVVTRIMNREDAI-------------------ASGAAALLGTKYNDRVRVVSVEYE 684
           A+NLP V + ++ E+A+                   A GA  L    + D V        
Sbjct: 107 ARNLPFVRKEVSMEEAVRLFEEKGEKFKVEIIQDIAAKGAKTLTLYSHGDWV-------- 158

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
                    C G H  STG + ++ I+S S
Sbjct: 159 -------DFCLGPHGPSTGRVGVIKILSSS 181


>gi|238925421|ref|YP_002938938.1| truncated alanine-tRNA ligase [Eubacterium rectale ATCC 33656]
 gi|238877097|gb|ACR76804.1| truncated alanine-tRNA ligase [Eubacterium rectale ATCC 33656]
          Length = 417

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 160/405 (39%), Gaps = 76/405 (18%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV-------- 560
           ++ +++ +QT F+ E GGQ  D G   G     ++ DVQ K  G+  H   +        
Sbjct: 34  KQFDIILNQTLFFPEEGGQSPDMGILGG----YRVVDVQIK-NGVITHTVDISADDCCEA 88

Query: 561 ---------------ERGILRTEMSLVLTIDYQNRRQLSINHSATHL----LHHALS-TI 600
                          E+  L   + +   ID+Q+R      HS  H+    +H       
Sbjct: 89  EKETGKQITGNEFEPEKVELAAGVHVQGKIDWQHRFYNMQQHSGEHIFSGIVHRRFGFEN 148

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G H+S   S +T D        S  I+  ++  +E  VN  I++N+P+     +R++  
Sbjct: 149 VGFHLSD--SVVTMD-------FSGVISPEDIAEVEHEVNVAISKNIPIEVTYPSRDE-- 197

Query: 661 ASGAAALLGTKYNDR------VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
                 L   +Y  +      VR+V+V   D        C   HV  TGEI +L +++  
Sbjct: 198 ------LAQLEYRSKIEIEGQVRIVTVPGYD-----VCACCAPHVKRTGEIGMLKVMNYQ 246

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--WEEYRKLQL 772
           + + G+ RI  + G RA      + + +  L      +Q  +V  V ++    +  K +L
Sbjct: 247 NYKGGV-RISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKSEL 305

Query: 773 IHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             AK   L   V +L     AD +        +D+   ++ ++ L +K  SG       +
Sbjct: 306 GTAKSALLDYKVAELP----ADTDNAVLFEDGIDTNTARNCVNGLVEKY-SGFSAFFTGN 360

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            E   S +I       +   A    +L A+      GGG+P M Q
Sbjct: 361 DEAGYSFIIGSKNADCNTVAAALRNKLGAR------GGGKPVMVQ 399


>gi|257885297|ref|ZP_05664950.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257821149|gb|EEV48283.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 645

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSIN 586
           G T  AI + I   +    KKA    V+  +V+  R I       ++T D+++   L + 
Sbjct: 17  GTTTLAIAESISKSLA---KKALAGKVNGKLVDLTRPIEENASIEIITPDHEDALGL-VR 72

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQ 645
           HSA HL+  A+  +  +     G  I   G  +D  + +  +T+ +L +IE  +  I+ +
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAID-SGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKE 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           NLP+  R++++++A+   A+     +  ++    V   Y+ G      LC G HV STG 
Sbjct: 132 NLPIERRVLSKQEALEIFASDPYKVELISELPEEVITAYQQGEFID--LCRGPHVPSTGR 189

Query: 705 IMLLYIVS 712
           I +  ++S
Sbjct: 190 IQVFKLLS 197


>gi|257865905|ref|ZP_05645558.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872238|ref|ZP_05651891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257799839|gb|EEV28891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806402|gb|EEV35224.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 646

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 11/146 (7%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   L + HS  HL+  A+  +  S     G  I   G  +D  + + PIT+ 
Sbjct: 60  IVTPDHEDALGL-LRHSTAHLMAQAMRRLYTSIHFGVGPAID-SGFYYDTDNGENPITAE 117

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDG 686
           +L +IE  +  II +NL +  R++ +E+A+   A       L T+  D   + +  Y+ G
Sbjct: 118 DLPAIEAEMMKIIKENLAIERRVLTKEEALTLFAEDPYKVELITELPDDETITA--YQQG 175

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I +  ++S
Sbjct: 176 EF--VDLCRGPHVPSTGRIQVYKLLS 199


>gi|312951108|ref|ZP_07770013.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310630884|gb|EFQ14167.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315154152|gb|EFT98168.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 660

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 25/205 (12%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKA-----EGIFVH--HAIVERGILRTEMSLVL 573
           + +   +L D+G    D  +     + KKA      G+ +     IVE G L      ++
Sbjct: 22  FPDGAVKLFDSGITTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLE-----IV 76

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAEL 632
           T D+++   + + HS+ HL+ +AL  +  +     G  I   G  +D  + + P+T+ +L
Sbjct: 77  TPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFYYDTDNGESPVTAEDL 134

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGG 687
            +IE  +  I+ +N P+V + ++R +A+   A       L+     D +  V   Y+ G 
Sbjct: 135 PAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITV---YDQGD 191

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG I +  ++S
Sbjct: 192 F--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|207723063|ref|YP_002253475.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206588254|emb|CAQ18812.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 344

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELHPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   +  R +A+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWRRNEAVKLFEG--MGEKYKAEIIASIPEDQEIGLYREGSFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|218283792|ref|ZP_03489715.1| hypothetical protein EUBIFOR_02309 [Eubacterium biforme DSM 3989]
 gi|218215598|gb|EEC89136.1| hypothetical protein EUBIFOR_02309 [Eubacterium biforme DSM 3989]
          Length = 364

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 116/278 (41%), Gaps = 39/278 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +++ DQT F+ E GGQ  D G        +++ DVQ   + I  HH       L  ++  
Sbjct: 30  DIILDQTLFFPEEGGQTCDKGTLNA----IEVVDVQIINDEI--HHYT--HSALNGDVQG 81

Query: 572 VLTIDYQNRRQLSINHSATH----LLHHALSTI-LGSHVSQNGSCITPDGLRFDVTHSKP 626
           +  ID+ +R     +H+  H    L+H       +G H+  N   IT D       ++  
Sbjct: 82  I--IDWTHRYTNMQHHTGEHILSGLMHKEFHVDNVGFHLGYNE--ITAD-------YAMD 130

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + + ++K IE  VN +I  N PV T  +     +   A   L      + R+V +E  D 
Sbjct: 131 LNNDQIKRIEALVNSVIFSNKPVKTYYLEDYSNMEYRAKLDLA-----KPRLVEIEDVD- 184

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C   HV ST E+ L  IV    I+ G R            +++  D+ ++ ++
Sbjct: 185 ----LCACCAPHVKSTIEVGLFKIVKSMKIKKGTRLFFLCGKLAYEDYVLKHDQSIQ-IS 239

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           + L  S   +   V+ + +E   L+    +R  QLN E
Sbjct: 240 NQLSSSIETLSSNVQRVLDENYALK----QRIKQLNKE 273


>gi|295092070|emb|CBK78177.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Clostridium cf.
           saccharolyticum K10]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ ++  IE  +  I+
Sbjct: 76  ALRHTASHVMAQAVKRLYPDTKLAIGPSIA-DGFYYDVDPASPMTAEDMGKIEAEMKKIV 134

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--------ALCG 695
            +NLP+    + RE+AIA         +  +  +V  +E    G   S         LC 
Sbjct: 135 KENLPIERFTLPREEAIA------FMKEKEEPYKVELIEDLPEGAEISFYRQGEFVDLCA 188

Query: 696 GTHVSSTGEIMLLY 709
           G H+ ST ++   Y
Sbjct: 189 GPHLMSTKDVGKAY 202


>gi|295115128|emb|CBL35975.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SM4/1]
          Length = 605

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ ++  IE  +  I+
Sbjct: 31  ALRHTASHVMAQAVKRLYPDTKLAIGPSIA-DGFYYDVDPASPMTAEDMGKIEAEMKKIV 89

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--------ALCG 695
            +NLP+    + RE+AIA         +  +  +V  +E    G   S         LC 
Sbjct: 90  KENLPIERFTLPREEAIA------FMKEKEEPYKVELIEDLPEGAEISFYRQGEFVDLCA 143

Query: 696 GTHVSSTGEIMLLY 709
           G H+ ST ++   Y
Sbjct: 144 GPHLMSTKDVGKAY 157


>gi|254282289|ref|ZP_04957257.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219678492|gb|EED34841.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 643

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A   +        G  +  DG  +D       T  +L+ IE  + +I+A
Sbjct: 71  LRHSTAHLLAQATQQLFPDTQVTIGPTVE-DGFYYDFATEHRFTPEDLEKIEARMAEIVA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+LPV   + +RE+  A+   A +G  +  ++     E E+  ++       LC G HV 
Sbjct: 130 QDLPVERVVCSREE--AAKLFAEMGEHFKVQIVEDLPEGEEISLYRQGEWVDLCRGPHVP 187

Query: 701 STGEI 705
           STG+I
Sbjct: 188 STGKI 192


>gi|147678291|ref|YP_001212506.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146274388|dbj|BAF60137.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 640

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 12/146 (8%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           LT +++  RQ+   HS  H++  A+  +        G  I  DG  +D    +P T  +L
Sbjct: 65  LTFEHEEGRQV-YRHSTAHVMAQAVQRLFPGTRLAIGPAIA-DGFYYDFDPQEPFTPEDL 122

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVE-YEDG 686
             IE  + +II  +LP     ++R +A+A    A  G  Y      D    V +  Y  G
Sbjct: 123 AKIEKEMENIIKADLPFERAELSRAEALAMFREA--GQDYKVELIEDLPPEVPISVYRQG 180

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG +  + ++S
Sbjct: 181 EF--VDLCTGPHVPSTGRLKAVKLMS 204


>gi|91094383|ref|XP_971062.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           [Tribolium castaneum]
 gi|270014911|gb|EFA11359.1| hypothetical protein TcasGA2_TC011516 [Tribolium castaneum]
          Length = 409

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 155/374 (41%), Gaps = 50/374 (13%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ + T  + E GGQ  D G  + D    Q+     KA    VH   +E+  L     +
Sbjct: 41  EVILENTVLFPEGGGQPCDHG-FLNDQPVYQVIRRGDKA----VH--FIEKP-LNVGDDV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHAL---------STILGSHVSQNGSCITPDGLRFDVT 622
              ID+  R      HS  HL+   L         S  LG  VS          +  D+ 
Sbjct: 93  KGIIDWNRRLDHMQQHSGQHLISAVLIREFNFDTISWYLGEEVSY---------IELDIP 143

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR----EDAIASGAAALLGTKYNDRVRV 678
               IT  ++  +E+  N++I    PVV  I +     E      +A  L   +   +RV
Sbjct: 144 K---ITQEQIDHVENICNELIRDQRPVVVNIFDENTPPEKLENYRSARDLPADHVGDIRV 200

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAITGQRARSHLMG 737
           V++E    G+ S+ +C GTHV++  ++  + ++ SE S R     +  ++G R  + L  
Sbjct: 201 VTIE----GIDSN-MCCGTHVTNLSQLQAIKLLHSEKSKRKDKVLLYFLSGNRVINRLDN 255

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
             ++ + L + LK +       VE++ +  + L      + LQ  ++DL+ ++ A +   
Sbjct: 256 CLKREQKLTALLKTNPVQHPEFVEKLVQGNKSLN-----KNLQTVLKDLAVYEAAKLKES 310

Query: 798 SHIISEVDSKEL-KSVMDALQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                 +  KE   + M  L K+  +S I   + +  EK A  +++      D     DL
Sbjct: 311 KEKYFFLHRKEADPTFMSILLKEAGRSDIFQFLSVGDEKGAGNIVLYG----DEKAISDL 366

Query: 856 ARLSAKVLGGGGGG 869
           +    ++LGG G  
Sbjct: 367 SPKICELLGGKGAA 380


>gi|310821380|ref|YP_003953738.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394452|gb|ADO71911.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 642

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 37/150 (24%)

Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I H A HL+  A+  +  G+ V+   +  T +G  +D    KP T  +L+ IE   N  I
Sbjct: 75  IRHDAAHLVASAVQRLFPGTQVTIGPA--TEEGFYYDFFREKPFTPEDLEKIEAEANAEI 132

Query: 644 AQNLPVVTRIMNREDAI-------------------ASGAAALLGTKYNDRVRVVSVEYE 684
           A+NLP V + ++ E+A+                   A GA  L    + D V        
Sbjct: 133 ARNLPFVRKEVSMEEAVRLFEEKGEKFKVEIIQDIAAKGAKTLTLYSHGDWV-------- 184

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
                    C G H  STG + ++ I+S S
Sbjct: 185 -------DFCLGPHGPSTGRVGVIKILSSS 207


>gi|83643616|ref|YP_432051.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
 gi|83631659|gb|ABC27626.1| predicted metal-dependent Hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Hahella chejuensis KCTC 2396]
          Length = 212

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 29/199 (14%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           S Q   +  ++T FYA +GGQ  D G   G     ++   +K+ + IF  + + E   L+
Sbjct: 21  SVQDAVITVEETIFYALSGGQESDHGTIGG----FRVISARKEEQEIF--YELPEDHALQ 74

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + +TID++ R +L   H A  L+       LG  V + G+ I  +  R D +  + 
Sbjct: 75  VGDPVEITIDWERRYRLMRLHFAAELVLELFYRKLG-RVDKVGAHIAEEKARIDFSWPQS 133

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           I S  L  I+ +   +I +N  +++   + EDA                 R   VE    
Sbjct: 134 I-SPLLPDIDADAQRLIDENRDIISAFSD-EDA---------------ERRYWRVE---- 172

Query: 687 GVHSSALCGGTHVSSTGEI 705
              +   CGGTH++ TGE+
Sbjct: 173 -GFAEVPCGGTHLTRTGEV 190


>gi|261416474|ref|YP_003250157.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372930|gb|ACX75675.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 695

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 23/201 (11%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ---LSI 585
           G TG  I   I      + +KA G+ +   +++     TE   +  I   N      + +
Sbjct: 69  GTTGLEIAKSIS---EGLARKALGVKLGDKVLDLNRPLTESGAIKIITPNNDDPDALMLL 125

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS +H+L  A+  +        G  I   G  +D+    PI  ++ + IE  + +II +
Sbjct: 126 RHSCSHVLAEAICDLFPGTKLAYGPAID-KGFYYDLMTPTPIQQSDFERIEKRMKEIIKE 184

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDG----------GVHSSAL 693
           + P V   ++ ED    G     G KY  ++  R ++ E  DG          G +   L
Sbjct: 185 DRPFVRCEVSAED----GLKRTEGDKYKTDNAQRALAREGSDGTLSFYVTGEPGKNFEDL 240

Query: 694 CGGTHVSSTGEIMLLYIVSES 714
           C G HV STG++    ++S S
Sbjct: 241 CAGPHVPSTGKLKNFKVLSMS 261


>gi|15615496|ref|NP_243800.1| hypothetical protein BH2934 [Bacillus halodurans C-125]
 gi|10175556|dbj|BAB06653.1| BH2934 [Bacillus halodurans C-125]
          Length = 242

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 23/224 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            K +V+ ++T F+   GGQ  D G    +G   ++ +V+K+ E I +H+          E
Sbjct: 23  NKDKVILEETIFHPNGGGQPNDEGWLYQNGKAYKVINVRKEGEEI-IHYLEDA--DDLEE 79

Query: 569 MSLVLTIDYQNRRQLSINHS-----ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
             + + I++  R      H+     A HL H   +  +G+ + +N +       R D+  
Sbjct: 80  DEVRMKINWSRRYNFMKYHTLLHLVAGHLYHEYGALAIGNQIFENRA-------RLDIDF 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLG--TKYNDRVRVVS 680
                  +   +E+ +N +I +   +  R + R+ ++I+     ++         +R+V+
Sbjct: 133 RGGELDVDFHRVEEELNRLINEGRKMNIRNVERDSESISEKIRTVINLIPASVKNIRLVA 192

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +E  D        C GTHV++  EI    I    S   G RR+E
Sbjct: 193 IENMD-----EQPCSGTHVNNINEIGPFKISGNKSKGKGKRRLE 231


>gi|291571004|dbj|BAI93276.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 604

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ 
Sbjct: 30  IRHTTSHVMAMAVQKLFPKAQVTIGPWIE-NGFYYDFDSPEPFTEQDLKAIKKEMVKILK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           + LPV+   ++RE+  A      LG  Y      D    +++ +   G     LC G HV
Sbjct: 89  RKLPVIREEVSREE--AQRRIETLGEPYKLEILADLTEPITIYH--LGDQWWDLCAGPHV 144

Query: 700 SSTGEI 705
            +TG+I
Sbjct: 145 ETTGDI 150


>gi|261418266|ref|YP_003251948.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767774|ref|YP_004133275.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374723|gb|ACX77466.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112640|gb|ADU95132.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 652

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 21/139 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  + G+ V      +  +G  +D+     +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKRLYGN-VKLGVGPVIENGFYYDIDMEHKLTPDDLPKIEAEMRKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-----------VSVEYEDGGVHSSAL 693
           +NL +V + ++RE+AI       L  +  D +++           +S+ YE G      L
Sbjct: 133 ENLDIVRKEVSREEAIR------LYEEIGDELKLELIADIPEGEPISI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I    ++S
Sbjct: 184 CRGVHVPSTGKIKEFKLLS 202


>gi|325284894|ref|YP_004264356.1| phosphoesterase DHHA1 [Deinococcus proteolyticus MRP]
 gi|324316609|gb|ADY27721.1| phosphoesterase DHHA1 [Deinococcus proteolyticus MRP]
          Length = 411

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 132/343 (38%), Gaps = 30/343 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVER 562
           + V+  K EV  D + FY + GGQ GD G         ++T  +  KA G   H   VE 
Sbjct: 27  QVVAAAKGEVALDASAFYPQGGGQNGDCGWLRAGEQSWKVTGTRLDKASGAVWH--AVEG 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS----HVSQNGSCITPDGLR 618
            +      L   +D  +R +    H+  HLL  A + +  +     V   G   T D LR
Sbjct: 85  ELPPVGTQLDGEVDAYSRLRQMARHTGEHLLAQAFARVNPAFEVAAVGMRGPDCTLD-LR 143

Query: 619 FDVTHSKPITSAELKSIEDNVNDI-IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            D +       A+ ++ E  + ++ +A  L + T+++   +  A        T     VR
Sbjct: 144 GDPSE------ADAQAAEALLREVMVAGPLRLDTQLVPHTELRAY--PLRRATPLTGDVR 195

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V      G +   + C GTH+        + ++    I+AG+ R+    G  A  +L G
Sbjct: 196 LVMFRDAAGDLFDVSACAGTHLPLGNLAAPVTVLGLERIKAGLTRVTFRAGPEAAEYLGG 255

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-------------QLIHAKRKLQLNVE 784
                ++LA         +  RVE +  E  +L              L+ A         
Sbjct: 256 VYRDTRALAQSFSTGPAGLAERVEALRSERDRLAAEAQALRTALAGALVDAAPAETAGSV 315

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            L    + +   ++ ++  V + E+++ +   +  + SG+  L
Sbjct: 316 TLRLLSLPEEGLLAPVLGSVPAGEVRAAVAGERCGVGSGVPEL 358


>gi|257087763|ref|ZP_05582124.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995793|gb|EEU83095.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 645

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HSA HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSAAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|170290573|ref|YP_001737389.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174653|gb|ACB07706.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 240

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 16/213 (7%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +++ E V  AV G KV    D+T FY   GG   D G  +      ++ +V+K++  ++ 
Sbjct: 17  LKEFEAVVRAVEGDKVS--LDRTAFYPSGGGLPSDVGKLLRGEEEFEVIEVRKESGNVW- 73

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
            H +   G+   + ++   +D+  R ++   H+A H L   L++  G  V+  G+ +  D
Sbjct: 74  -HTVGRPGLTVGD-AVRGILDWDKRYRIMRMHTALHALIALLNSKYGVLVT--GNNVGYD 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-- 673
             R DV   +P     ++ +    N ++++   V    ++RE+A+       L       
Sbjct: 130 RSRVDVNLERPDREL-VEEVIAETNKLLSEGREVKIYYLSREEAMKIPGIIKLAKALPPD 188

Query: 674 -DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            D++R+V +E    G+   A  GG HV +T EI
Sbjct: 189 VDKLRIVEIE----GIDIQA-DGGPHVRNTREI 216


>gi|172056520|ref|YP_001812980.1| threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sibiricum
           255-15]
 gi|171989041|gb|ACB59963.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sibiricum
           255-15]
          Length = 383

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 34/277 (12%)

Query: 503 EEAVSGQKVE----VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           E  V+G K E    V  +Q+ FY E+GGQ  D G   G    + + DVQ + EG   H  
Sbjct: 14  ESIVTGTKEEQGYWVRLEQSYFYPESGGQPADRGTLNG----VSVLDVQLQ-EGDVWH-- 66

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG----SCITP 614
           +++  +L  E      +  +    +  +H+A H   H +S IL            +    
Sbjct: 67  LLDSPLLENE------VQGEVDDVIRTDHAAQHTAQHVISAILQDEFQIKTVSFRTGTEE 120

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYN 673
             L  D+        + L   E+ +  +I  NL +       E+A+      L  T +  
Sbjct: 121 STLDLDLGDWDETLQSRL---EERLRTVIQANLLITATEYTEEEALQ---LPLRKTPQVT 174

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           +++RVV +    G +  SA CGGTH++ST E+ L+       +R  I R+  +   RA  
Sbjct: 175 EKIRVVQI----GELDYSA-CGGTHLASTSELELILFTGLEKVRGNI-RLAYVAKDRAFR 228

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            L  +   L   A  +   +  V   VE++ +E  +L
Sbjct: 229 LLTTERRVLTETARAVSAKKNQVHLVVEDLKQEQVRL 265


>gi|255009584|ref|ZP_05281710.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 164

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +    G   S+N   I     + D       T  ++ +IE+ VN+ I ++
Sbjct: 29  HTAEHLLNATMVKTFGCPRSRNAH-IEKKKSKCDYELPVCPTEEQIHAIEEKVNEAINRH 87

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV    M  E A +    + L    ++ +R+V +     G + +  C G HV +T EI 
Sbjct: 88  LPVTCEFMTHEKAKSIVDLSKLPENASEMLRIVRI-----GDYDACACIGQHVENTSEIG 142

Query: 707 LLYIVS 712
           +  I+S
Sbjct: 143 IFKIIS 148


>gi|238878383|gb|EEQ42021.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 471

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 126/308 (40%), Gaps = 35/308 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK----KAEGIFVHHAIVERGILRTE 568
           V  + T  + E GGQ  D G         +I +V+     K + I +   ++E G     
Sbjct: 66  VELEDTILFPEGGGQPYDKGTITLLPDNTKIIEVKSVLRDKLKAIHLVDELIEPG----- 120

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R  +   H+  HLL     T     +S +    T D + + +   + I 
Sbjct: 121 TQVRLNVDWGRRLDIMQQHTGQHLLSAVFDTYKLETLSWSMGE-TKDDINY-IELPRKID 178

Query: 629 SAELKSIEDNVNDIIAQNLP--VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-- 684
           +  +  +++ VN +I  ++P  VVT   +                 +  +  +  +Y+  
Sbjct: 179 NDLVVEVQNKVNQLIVDSIPITVVTSDQHGHGQEHEHEHEHEHEHADIDISHIPDDYDLS 238

Query: 685 DGGV--------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
            GG+          +  C GTH++ST +I  + ++ +S IR G  R+  I G R  +HL 
Sbjct: 239 QGGIIRIVKIGELDANPCCGTHLTSTAQIQSIALLHQSPIRGGHSRLHFICGGRVANHLR 298

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VEDLSCHKI 791
            + E LK+      VS   +   ++ + E+   L L + K    LN     +  +  +KI
Sbjct: 299 KEHEILKN------VSTNQLSCSIDAVEEKIELLSLNYKKTNSTLNNLLKELASIEANKI 352

Query: 792 ADVNFMSH 799
              NF +H
Sbjct: 353 FQ-NFKTH 359


>gi|282877699|ref|ZP_06286514.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281300271|gb|EFA92625.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 654

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           HS+ HLL  AL  +        G  I  +G  +DV  +   PI+  +   IE  + ++  
Sbjct: 73  HSSAHLLAEALKELYPGIQFGFGPAIE-NGFFYDVQTADGTPISENDFPKIEQKMMELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCGGTH 698
           +N P+V R +++ DA+    A   G  Y  +V  +  + EDG + +      + LC G H
Sbjct: 132 KNQPIVRRELSKADAVNEFTAD--GQTY--KVEHIVEDLEDGNISTYTQGNFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           + STG   L+  V  +S+     R +A   Q  R
Sbjct: 188 LMSTG---LIKAVKITSVAGAFWRGDAKNTQLTR 218


>gi|224823924|ref|ZP_03697033.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
 gi|224604379|gb|EEG10553.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
          Length = 236

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMS 570
           VV ++T  Y   GGQ GD    +  DG+ L + D ++ KA    VH    +   L     
Sbjct: 26  VVLEETLCYPLGGGQPGDCATLSTTDGMVLTVQDTRRDKATRDIVHLVAADAPRLAEGTP 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTHSKPITS 629
           + L +D+  R +    H   H   H LS ++ + V+  G+  T  G L FD+     +  
Sbjct: 86  VTLELDWSRRHR----HMRVHTCLHLLSVVIKAGVT-GGNLTTESGRLDFDLPEGMVLDR 140

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGV 688
            E   IE  +N +IA++  V   +M   +A+ +    +        + +  +   E  GV
Sbjct: 141 DE---IERELNRLIAEDRAVKV-VMTSGEALKAQPELIKTMSVTPPLELPEIRLIEVDGV 196

Query: 689 HSSALCGGTHVSSTGEI 705
                CGGTHV+ TGEI
Sbjct: 197 DLQP-CGGTHVARTGEI 212


>gi|159903594|ref|YP_001550938.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|238687108|sp|A9BAX2|SYT_PROM4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|159888770|gb|ABX08984.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 638

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+++SK  T  +L  IE+ + D+I 
Sbjct: 71  IRHSFAHLIGHAVKQLYPDAKMAIGPIIE-DGFYYDISYSKTFTPEDLARIEERIKDLIK 129

Query: 645 QNLPVVTRIMNREDAIAS 662
            N  VV  I++R+ A+ +
Sbjct: 130 LNYDVVVEIVSRDKALNT 147


>gi|257421590|ref|ZP_05598580.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|257163414|gb|EEU93374.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
          Length = 645

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HSA HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSAAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|71908290|ref|YP_285877.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
 gi|123733181|sp|Q47CM4|SYT_DECAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71847911|gb|AAZ47407.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
          Length = 638

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +++PV   +  R+DA+       LG KY   +       + VS+ Y +G      LC G 
Sbjct: 130 KDIPVSREVWARDDAVKFFLD--LGEKYKAELIGAIPADQQVSL-YREGDFID--LCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV +T ++ +  ++
Sbjct: 185 HVPTTAKLKVFKLM 198


>gi|22325483|ref|NP_671778.1| EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA
           ligase/ ligase, forming aminoacyl-tRNA and related
           compounds / nucleotide binding / threonine-tRNA ligase
           [Arabidopsis thaliana]
 gi|330250779|gb|AEC05873.1| putative threonyl-tRNA synthetase, putative / threonine--tRNA
           ligase [Arabidopsis thaliana]
          Length = 650

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 558 AIVERGILRTEMS-LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           AI   G  + E S +VL  +  + + L I H+  H++  A+  +        G  I  +G
Sbjct: 54  AISSSGPKKAEPSTVVLPSNESSDKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWID-NG 112

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--D 674
             +D    +P+T  +LK I+  ++ II++NLP++   ++RE+A     A     K    D
Sbjct: 113 FYYDFD-MEPLTDKDLKRIKKEMDRIISRNLPLLREEVSREEAKKRIMAINEPYKMEILD 171

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            ++   +     G     LC G HV +TG+I
Sbjct: 172 GIKEEPITVYHIGNEWWDLCAGPHVETTGKI 202


>gi|170702117|ref|ZP_02893028.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria
           IOP40-10]
 gi|170132966|gb|EDT01383.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria
           IOP40-10]
          Length = 243

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 98/252 (38%), Gaps = 46/252 (18%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQK-KAE 551
           A + Q + V  AV    + +  D+T FY   GGQ GD+G   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDGIRL--DRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAI--------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L   +  
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWLRRYRHMRLHTAAHLMCAVLPYPV-- 126

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKS------------IEDNVNDIIAQNLPVVT 651
               +G  +T D +R D   S  I  A+++               + + D      P + 
Sbjct: 127 ----DGCSVTADYVRLDFATSDAIDRADVERRLAELVRGAHAVTTEWITDAEMTERPELV 182

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M+ +  +  G   LL        R+  V+ +         CGGTHV +T EI  L + 
Sbjct: 183 RTMSVKPPMGLGRVRLL--------RIAGVDLQP--------CGGTHVHNTSEIGDLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRV 238


>gi|120611523|ref|YP_971201.1| threonyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|166223312|sp|A1TR39|SYT_ACIAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120589987|gb|ABM33427.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidovorax
           citrulli AAC00-1]
          Length = 639

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVIE-EGFYYDIAYERPFTPEDLAAIEQRMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R++ I        G +Y  R+     + +  G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRDEVIQVFRER--GEEYKLRLVEDMPDEKAMGLYYHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T     L +   + +     R +A   Q  R +     +K K L +++K
Sbjct: 188 NT---RFLKVFKLTRVSGAYWRGDARNEQLQRIYGTAWADK-KDLEAYVK 233


>gi|56421254|ref|YP_148572.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297529120|ref|YP_003670395.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|73919792|sp|Q5KWD2|SYT_GEOKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56381096|dbj|BAD77004.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297252372|gb|ADI25818.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 652

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 21/139 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  + G+ V      +  +G  +D+     +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKRLYGN-VKLGVGPVIENGFYYDIDMEHKLTPDDLPKIEAEMRKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-----------VSVEYEDGGVHSSAL 693
           +NL +V + ++RE+AI       L  +  D +++           +S+ YE G      L
Sbjct: 133 ENLDIVRKEVSREEAIR------LYEEIGDELKLELIADIPEGEPISI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I    ++S
Sbjct: 184 CRGVHVPSTGKIKEFKLLS 202


>gi|170077251|ref|YP_001733889.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|169884920|gb|ACA98633.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 604

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 28/151 (18%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G   T +G  +D    +P T A+LK+I+  +  I+ 
Sbjct: 26  IRHTTSHVMAMAVQKLFPDAQVTIGPW-TENGFYYDFDKPEPFTEADLKAIKKEMVKIVK 84

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE---DGGVHSSA--------- 692
           + LPVV   ++R +A               R++ ++  Y+     G+H            
Sbjct: 85  KKLPVVREEISRAEA-------------EKRIKEINEPYKLEILAGIHDPITLYYLGDQW 131

Query: 693 --LCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             LC G HV +TG+I    I  ES   A  R
Sbjct: 132 WDLCAGPHVENTGDINPKAIALESVAGAYWR 162


>gi|86608959|ref|YP_477721.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557501|gb|ABD02458.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 603

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H+L  A+  +        G   T  G  +D  H +P T  +L  I+  +  II 
Sbjct: 29  IRHTTSHVLAMAVQKLFPKAQVTIGPT-TDYGFYYDFDHPEPFTPEDLDRIKKEMQAIIK 87

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           + LPV+   ++RE+A     A  LG  Y   +        V+S+ +   G     LC G 
Sbjct: 88  KGLPVIREEVSREEARRRIEA--LGEPYKLEILDSIPEGEVISIYH--LGNEWWDLCAGP 143

Query: 698 HVSSTGEI 705
           HV +T E+
Sbjct: 144 HVENTQEL 151


>gi|294619108|ref|ZP_06698603.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291594769|gb|EFF26151.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 646

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 11/188 (5%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSIN 586
           G T  AI + I   +    KKA    V+  +V+  R I       ++T D+++   L + 
Sbjct: 17  GTTTLAIAESISKSLA---KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGL-VR 72

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQ 645
           HSA HL+  A+  +  +     G  I   G  +D  + +  +T+ +L +IE  +  I+ +
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAID-SGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKE 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           NLP+  R++++++A+   A+     +  ++    V   Y+ G      LC G HV STG 
Sbjct: 132 NLPIERRVLSKQEALEIFASDPYKVELISELPEEVITAYQQGEFID--LCRGPHVPSTGR 189

Query: 705 IMLLYIVS 712
           I +  ++S
Sbjct: 190 IQVFKLLS 197


>gi|315641145|ref|ZP_07896224.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483153|gb|EFU73670.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 650

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 9/145 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSK-PITS 629
           ++T D+++   L + HS+ HL+ HA+  +  G H    G  I   G  +D  + + PIT+
Sbjct: 59  IVTPDHEDALPL-LRHSSAHLMAHAMHRLYPGIHFGV-GPAID-SGFYYDTDNGEHPITA 115

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV--VSVEYEDGG 687
            +L +IE  +  +I +N P+   ++++E+A+   A+     +    +    V   Y+ G 
Sbjct: 116 EDLPAIEVEMMKVIKENHPIERMVLSKEEALELFASDPYKVELITELPADEVITAYKQGD 175

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG I +  ++S
Sbjct: 176 F--VDLCRGPHVPSTGRIQVFKLLS 198


>gi|163857146|ref|YP_001631444.1| threonyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|229557977|sp|A9IRH6|SYT_BORPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|163260874|emb|CAP43176.1| thrS [Bordetella petrii]
          Length = 650

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMTELAR 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++  V      R+DA+A   +  +G  Y   + + S+        Y +G      LC G 
Sbjct: 135 KDETVTREEWTRDDAVAYFKS--IGEDYKAEI-IASIPANETLSLYREGNF--VDLCRGP 189

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 190 HVPSTGKLKVFKLM 203


>gi|88706032|ref|ZP_01103740.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699746|gb|EAQ96857.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 645

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  I  DG  +D       T  +L  IE  + +I++
Sbjct: 71  IRHSTAHLLAMAVQDLFPGTQVTIGPVIE-DGFYYDFAGEHQFTPEDLPKIEARMAEIVS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            +LPV   +M+R+ A A  A   +G  Y   +     E E+  ++       LC G HV 
Sbjct: 130 ADLPVERIVMDRDAAAA--AFEKMGESYKVEIIRDLPEGEEISLYRQGEWMDLCRGPHVP 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKL 192


>gi|207742945|ref|YP_002259337.1| threonyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206594340|emb|CAQ61267.1| probable threonyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 379

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELHPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + +R +A+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWSRNEAVKLFEG--MGEKYKAEIIASIPEDQEIGLYREGSFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|302325997|gb|ADL25198.1| threonine--tRNA ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 645

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 23/201 (11%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ---LSI 585
           G TG  I   I      + +KA G+ +   +++     TE   +  I   N      + +
Sbjct: 19  GTTGLEIAKSIS---EGLARKALGVKLGDKVLDLNRPLTESGAIKIITPNNDDPDALMLL 75

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS +H+L  A+  +        G  I   G  +D+    PI  ++ + IE  + +II +
Sbjct: 76  RHSCSHVLAEAICDLFPGTKLAYGPAID-KGFYYDLMTPTPIQQSDFERIEKRMKEIIKE 134

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDG----------GVHSSAL 693
           + P V   ++ ED    G     G KY  ++  R ++ E  DG          G +   L
Sbjct: 135 DRPFVRCEVSAED----GLKRTEGDKYKTDNAQRALAREGSDGTLSFYVTGEPGKNFEDL 190

Query: 694 CGGTHVSSTGEIMLLYIVSES 714
           C G HV STG++    ++S S
Sbjct: 191 CAGPHVPSTGKLKNFKVLSMS 211


>gi|293569265|ref|ZP_06680563.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587971|gb|EFF19821.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 646

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 12/189 (6%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSIN 586
           G T  AI + I   +    KKA    V+  +V+  R I       ++T D+++   L + 
Sbjct: 17  GTTTLAIAESISKSLA---KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGL-VR 72

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQ 645
           HSA HL+  A+  +  +     G  I   G  +D  + +  +T+ +L +IE  +  I+ +
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAID-SGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKE 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSSTG 703
           NLP+  R++++++A+   A+     +  + +    V   Y+ G      LC G HV STG
Sbjct: 132 NLPIERRVLSKQEALEIFASDPYKVELINELPEEEVITAYQQGEFID--LCRGPHVPSTG 189

Query: 704 EIMLLYIVS 712
            I +  ++S
Sbjct: 190 RIQVFKLLS 198


>gi|288553677|ref|YP_003425612.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544837|gb|ADC48720.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 643

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++       KKA    ++H +V+     TE   +  +   +   L 
Sbjct: 20  GTTTEDIAASISPGLK-------KKALAGKLNHTLVDLRTPLTEDGEIAIVTQDSEEALE 72

Query: 585 I-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I  HS  HL+  A+  +    V      +   G  +D+   + IT+ +L  IE  +  II
Sbjct: 73  IMRHSTAHLMAQAVKRLFKG-VKLGVGPVIEGGFYYDIDSEESITAEDLPKIEKEMKKII 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHV 699
           A+NL V+   ++R +AI       +G +Y   +     E E   ++       LC G HV
Sbjct: 132 AENLEVIRVELSRGEAIVRYKE--VGDEYKLELIEAIPEGESLTIYEQGEFFDLCRGVHV 189

Query: 700 SSTGEIMLLYIVS 712
            ST +I    ++S
Sbjct: 190 PSTNKIKEFKLLS 202


>gi|297569216|ref|YP_003690560.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925131|gb|ADH85941.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 646

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 13/126 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  + G  V       T DG  +D    +P T A+L+ IE  + +I  
Sbjct: 73  LRHSAAHVMAEAVLELYGDEVQVTIGPATADGFYYDFDRQQPFTPADLEKIEALMAEIAT 132

Query: 645 QNLPVVTRIMNREDAI-------ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            + P   R ++R +A+        +    LL    +D+V +    Y  G      LC G 
Sbjct: 133 ADRPFERREVSRAEALEFFRQQGQNYKLELLDEIEDDQVSL----YSQGNF--VDLCRGP 186

Query: 698 HVSSTG 703
           H+ STG
Sbjct: 187 HLPSTG 192


>gi|297835784|ref|XP_002885774.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331614|gb|EFH62033.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 650

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 558 AIVERGILRTEMS-LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           AI   G  +TE S +VL  +  + + L I H+  H++  A+  +        G  I  +G
Sbjct: 54  AISNTGPKKTEPSTVVLPSNESSDKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWID-NG 112

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--D 674
             +D    +P+T  +LK I+  ++ II++NLP++   ++RE+A     A     K    +
Sbjct: 113 FYYDFD-MEPLTDKDLKRIKKEMDRIISRNLPLLREEVSREEAKERIMAINEPYKMEILE 171

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            ++   +     G     LC G HV +TG+I
Sbjct: 172 GIKEEPITVYHIGNEWWDLCAGPHVETTGKI 202


>gi|220905829|ref|YP_002481140.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862440|gb|ACL42779.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 610

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D  +  P T  +LK+I+  +  II 
Sbjct: 31  IRHTASHVMAMAVQKLFPKAQVTIGPWIE-NGFYYDFDNPDPFTEKDLKAIQKEMVKIIK 89

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHV 699
           + LPV+   ++RE+A     A  +   Y   + +  ++ E   ++        LC G H+
Sbjct: 90  RKLPVIREEISREEAERRIKA--INEPYKLEI-LADIQSEPITIYHLGDQWWDLCAGPHL 146

Query: 700 SSTGEIMLLYIVSES 714
            +TGE+    I  ES
Sbjct: 147 ENTGELHPDAIALES 161


>gi|169829542|ref|YP_001699700.1| threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|168994030|gb|ACA41570.1| Threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 643

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 15/193 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R       KKA    ++  +V+      E + +  I   +   L 
Sbjct: 20  GTSTDDVALSISPGLR-------KKAYAGKINDVLVDLKTPIEEDATIAIITQDDEEALE 72

Query: 585 I-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I  HS  HL   A+  +    V      +   G  +D+    PIT+ +L +IE  +  II
Sbjct: 73  ILRHSTAHLTAQAIKRLFPD-VKLGIGPVIDGGFYYDIDSPTPITAEDLPAIEKEMKKII 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHV 699
           A+NL V  + ++R +A A      +G +Y   +       E   ++       LC G HV
Sbjct: 132 AENLEVERKNVSRAEAQAMYEE--IGDEYKLELLEAIPADEQVSIYYQGEFFDLCRGIHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG++    ++S
Sbjct: 190 PSTGKLREFKLLS 202


>gi|294010776|ref|YP_003544236.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292674106|dbj|BAI95624.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 668

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 31/198 (15%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-----TEMSLVLTIDYQN 579
           G    D   AIG G  L    +  + +G         R I+R      +++LV + D  +
Sbjct: 20  GTTPADIAAAIGPG--LAKAAIAARVDGEL-------RDIMRPLEADAQLALVTSRDEAD 70

Query: 580 RRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVT------HSKPITSAEL 632
             +L+  H   H+L  A+  +  G+ ++   +  T DG  +D          +P T  +L
Sbjct: 71  ALELA-RHDFAHVLAEAVQALFPGTQITFGPA--TDDGFYYDFAPPLVEGKPRPFTEEDL 127

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            +IE  + +IIA + P+   +  RED IA   A   G  +         E E+  V+ S 
Sbjct: 128 PAIEAKMREIIAADKPLRREVWKREDLIARWRAG--GETFKAEWAAELPEGEELTVYWSG 185

Query: 693 -----LCGGTHVSSTGEI 705
                +C G H++STG++
Sbjct: 186 GDWLDMCRGPHLASTGKL 203


>gi|187477891|ref|YP_785915.1| threonyl-tRNA synthetase [Bordetella avium 197N]
 gi|123738749|sp|Q2L2M5|SYT_BORA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115422477|emb|CAJ49002.1| threonyl-tRNA synthetase [Bordetella avium 197N]
          Length = 650

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+ ++        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKSLYPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLQAIEKKMAELAR 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V      R+DA+A   +  +G  Y   +       E   ++       LC G HV 
Sbjct: 135 KDEVVTREEWTRDDAVAYFKS--IGENYKAEIIASIPSNEKISLYREGEFIDLCRGPHVP 192

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 193 STGKLKVFKLM 203


>gi|255946485|ref|XP_002564010.1| Pc20g15380 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588745|emb|CAP86867.1| Pc20g15380 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 266

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 32/207 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMS 570
           +V + T F+ + GGQ  DTG   G      +T V+  A G  +H  + E      +   +
Sbjct: 50  IVTEHTIFHPQGGGQPSDTGVLKGPSGAFAVTAVRTDANGQVLHLGLFEGPPSAFKEGDT 109

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTIL-----------GSHVSQNGSCITPDGLRF 619
           ++  ID + R   S  H+A H+L  ++  +L            SH   + +C        
Sbjct: 110 VLQAIDVERRLLYSRLHTAGHVLGASVRHLLEKEIENFDELKASHFPDSAAC-------- 161

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDR 675
                  I     +SI++ ++  IA  +PV     + ED  + G   L+  +      ++
Sbjct: 162 --EFQGSIEGKWKESIQNKLDGYIAAKMPVQIEWWDEEDFRSRGLERLIPDRSLVPAGEK 219

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSST 702
            RVV++   +        CGGTHV ST
Sbjct: 220 SRVVNIVGAE-----VYPCGGTHVDST 241


>gi|34499208|ref|NP_903423.1| alanyl-tRNA synthetase-like protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105059|gb|AAQ61415.1| probable alanyl-tRNA synthetase related protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 235

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 17/198 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           ++ + T  Y   GGQ GD+    + D   L+I D ++  E   + H       L     +
Sbjct: 26  LILEDTLCYPLGGGQPGDSAALTLADRSALRIADTRRDRETRAILHQTAGDARLAPGTEV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D+  R +    H   H   H L  ++ + V+  G  +T +  R D    + +   +
Sbjct: 86  TLELDWDRRYR----HMRIHTCLHLLGVVVKAGVT--GGNMTAESGRLDFALPEGM-ELD 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYEDGG 687
            ++IE  +N ++  +LP+  RI + E   A        ++    +   +R++ +E    G
Sbjct: 139 KENIEAELNRLVDADLPLAVRITSGEALKAQPELIRTMSVTPPLHLPEIRLIEIE----G 194

Query: 688 VHSSALCGGTHVSSTGEI 705
           V     CGGTHV+ TGE+
Sbjct: 195 VDLQP-CGGTHVARTGEV 211


>gi|291563461|emb|CBL42277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SS3/4]
          Length = 646

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 19/132 (14%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  I        G  I  DG  +D+   +P+TS +L  IE  +  II
Sbjct: 69  ALRHTASHVMAQAIKRIWPETKLAIGPSIA-DGFYYDIDRDEPVTSDDLAKIEAEMKKII 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
            + LP+    + R +AI+      L  + N+  +V  +E          Y+ G    + L
Sbjct: 128 KEALPLERFELPRAEAIS------LMKEKNEPYKVELIEDLPEDSIISFYKQG--EFTDL 179

Query: 694 CGGTHVSSTGEI 705
           C G H+ +T E+
Sbjct: 180 CAGPHLMNTKEV 191


>gi|213021625|ref|ZP_03336072.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 100

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           ++ ++ K L++++D L+ ++ S +I+L  +  E K S++  V++D+ DR  A +L  + A
Sbjct: 2   LAGIEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVA 60

Query: 861 KVLGGGGGGGRPHMAQSGGPN 881
           + +GG GGG RP MAQ+GG +
Sbjct: 61  QQVGGKGGG-RPDMAQAGGTD 80


>gi|153814564|ref|ZP_01967232.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|317501270|ref|ZP_07959474.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145848058|gb|EDK24976.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|316897337|gb|EFV19404.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 641

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 19/139 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  I  DG  +D+    P+T+ +L  IE  +  I+
Sbjct: 69  AFRHTASHIMAQAIKRLYPDAKLAIGPSIA-DGFYYDIDKETPLTAEDLDKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
            +NL +    M RE+AIA         + N+  +V  +E          Y  G    + L
Sbjct: 128 KENLEIKQYTMPREEAIA------YFKEKNEPYKVELIEDLPEGETISFYSQG--EFTDL 179

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G H+ +T  +    + S
Sbjct: 180 CAGPHLMTTKPVKAFKLTS 198


>gi|319783887|ref|YP_004143363.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169775|gb|ADV13313.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 658

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   ++P T  +   IE  + +II+
Sbjct: 74  IRHDAAHVLAEAVQELWPGTQVTIGPVIE-NGFYYDFARNEPFTPDDFPVIEKKMREIIS 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +R+   A    A  G +Y   +     E +D  +++      LC G H++
Sbjct: 133 RNKPFTKEVWSRDK--AKKVFADKGERYKLELIDAIPEDQDLKIYAQGDWFDLCRGPHMA 190

Query: 701 STGEI 705
           STG+I
Sbjct: 191 STGQI 195


>gi|74317025|ref|YP_314765.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123731846|sp|Q3SK34|SYT_THIDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|74056520|gb|AAZ96960.1| threonyl-tRNA synthetase, class IIa [Thiobacillus denitrificans
           ATCC 25259]
          Length = 637

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 12/128 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  DG  +D    +P T  +L+ IE  +++I+ 
Sbjct: 71  IRHDAAHVMAQAVQELYPGTQVTIGPAIE-DGFYYDFAREQPFTPEDLEKIEKRMDEIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSA----LCGGT 697
           ++LP+   + +R++A+       LG  Y  +V+++     + E+  ++       +C G 
Sbjct: 130 RDLPIRREVWSRDEAMK--VFGDLGETY--KVQIIDEVIPKGEELSIYRQGEWFDVCRGP 185

Query: 698 HVSSTGEI 705
           H+ STG++
Sbjct: 186 HLPSTGKL 193


>gi|260577397|ref|ZP_05845366.1| Threonyl/alanyl tRNA synthetase SAD [Rhodobacter sp. SW2]
 gi|259020400|gb|EEW23727.1| Threonyl/alanyl tRNA synthetase SAD [Rhodobacter sp. SW2]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 104/244 (42%), Gaps = 27/244 (11%)

Query: 503 EEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           E  V G   E  +V D + FYA  GGQ GD+G     G RL I     KAEG  +     
Sbjct: 16  EAQVIGHTAEGGIVLDASIFYATGGGQPGDSGLLRWPGGRLTIA-TAIKAEGDHIALVPA 74

Query: 561 ERGILRTEMSLVLT-IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           E   L    ++V+  +D+  R +    H+A HL    LS ++   V+  G  I  D  R 
Sbjct: 75  EPLALPPVGTVVMQHLDWTRRYRHMRVHTALHL----LSVVIPLPVT--GGQIGADRGRL 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKY---NDR 675
           D    +P    ++ +++  +N +I ++LPV  + I + E A   G    L         R
Sbjct: 129 DFDMPEP--PEDIAALDAALNALIDRDLPVTESWITDAELAANPGLVKTLSVMPPVGQGR 186

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR++ +  + G       CGGTHV+ T EI           R  I RIE    Q  R  L
Sbjct: 187 VRLIGIG-QGGARIDLQPCGGTHVARTAEIG----------RVEIGRIEKKGRQNRRVSL 235

Query: 736 MGQD 739
              D
Sbjct: 236 TLAD 239


>gi|83748297|ref|ZP_00945322.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725029|gb|EAP72182.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 635

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELHPDAQVTIGPVIE-NGFYYDFAYKRPFTPEDLVAIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   + +R +A+       +G KY   +     E ++ G++       LC G HV 
Sbjct: 130 KDEKVTREVWSRNEAVKLFEG--MGEKYKAEIIASIPEDQEIGLYREGSFVDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           STG++ +  ++
Sbjct: 188 STGKLKVFKLM 198


>gi|68479127|ref|XP_716369.1| hypothetical protein CaO19.12703 [Candida albicans SC5314]
 gi|68479258|ref|XP_716308.1| hypothetical protein CaO19.5239 [Candida albicans SC5314]
 gi|46437974|gb|EAK97312.1| hypothetical protein CaO19.5239 [Candida albicans SC5314]
 gi|46438036|gb|EAK97373.1| hypothetical protein CaO19.12703 [Candida albicans SC5314]
          Length = 471

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 126/308 (40%), Gaps = 35/308 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK----KAEGIFVHHAIVERGILRTE 568
           V  + T  + E GGQ  D G         +I +V+     K + I +   ++E G     
Sbjct: 66  VELEDTILFPEGGGQPYDKGTITLLPDNTKIIEVKSVLRDKLKAIHLVDELIEPG----- 120

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R  +   H+  HLL     T     +S +    T D + + +   + I 
Sbjct: 121 TQVRLNVDWGRRLDIMQQHTGQHLLSAVFDTYKLETLSWSMGE-TKDDINY-IELPRKID 178

Query: 629 SAELKSIEDNVNDIIAQNLP--VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-- 684
           +  +  +++ VN +I  ++P  VVT   +                 +  +  +  +Y+  
Sbjct: 179 NDLVVEVQNKVNQLIVDSIPITVVTSDQHGHGHGQEHEHEHEHEHADVDISHIPDDYDLS 238

Query: 685 DGGV--------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
            GG+          +  C GTH++ST +I  + ++ +S IR G  R+  I G R  +HL 
Sbjct: 239 QGGIIRIVKIGELDANPCCGTHLTSTAQIQSIALLHQSPIRGGHSRLYFICGGRVANHLR 298

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VEDLSCHKI 791
            + E LK+      VS   +   ++ + E+   L L + K    LN     +  +  +KI
Sbjct: 299 KEHEILKN------VSTNQLSCSIDAVEEKIELLSLNYKKTNSTLNNLLKELASIEANKI 352

Query: 792 ADVNFMSH 799
              NF +H
Sbjct: 353 FQ-NFKTH 359


>gi|154492740|ref|ZP_02032366.1| hypothetical protein PARMER_02377 [Parabacteroides merdae ATCC
           43184]
 gi|154087045|gb|EDN86090.1| hypothetical protein PARMER_02377 [Parabacteroides merdae ATCC
           43184]
          Length = 155

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N   I     + D    +  T
Sbjct: 1   MEQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKNAH-IERKKSKCDYELQEEPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++ +E  +N++I ++LPV    + + +A      + L    ++ +R+V +     G 
Sbjct: 60  AEMMEEVERRINEVIDRHLPVTIEFVPKAEAGKIVDLSKLPEDASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEI----MLLYIVSESSIR 717
           + +  C G HV++T EI    ML Y  ++  +R
Sbjct: 115 YDTCACIGAHVNNTSEIGHFKMLTYDYTDGRLR 147


>gi|209526622|ref|ZP_03275147.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209492990|gb|EDZ93320.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 604

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ 
Sbjct: 30  IRHTTSHVMAMAVHKLFPKAQVTIGPWIE-NGFYYDFDSPEPFTEQDLKAIKKEMVKILK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           + LPV+   ++RE+  A      LG  Y      D    +++ +   G     LC G HV
Sbjct: 89  RKLPVIREEVSREE--AQRRIETLGEPYKLEILADLTEPITIYH--LGDQWWDLCAGPHV 144

Query: 700 SSTGEI 705
            +TG+I
Sbjct: 145 ETTGDI 150


>gi|56964462|ref|YP_176193.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56910705|dbj|BAD65232.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 643

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +    V      +  DG  +D+   + IT+ +L  IE  +  II 
Sbjct: 74  MRHSTAHVLAQAVKRLFPG-VKLGVGPVIEDGFYYDIDADESITAEDLPRIEKEMKKIIG 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           +NL ++   ++RE+AIA         + ND  ++  +E          Y+ G      LC
Sbjct: 133 ENLEILREEVSREEAIAR------FKEINDPYKLELIEAIPEEETVTIYKQGEFFD--LC 184

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV ST +I    ++S
Sbjct: 185 RGVHVPSTNKIKEFKLLS 202


>gi|255994452|ref|ZP_05427587.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993165|gb|EEU03254.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 581

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+++H++  A+  +        G  I  DG  +DV     IT  +LK I+  +  II
Sbjct: 16  AYRHTSSHIMAQAIKRLWPEAKLAIGPAIK-DGFYYDVDLDHKITDDDLKKIQKEMKKII 74

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGV------HSSALCGG 696
             N P+   I++R+ A+      L+  K  D +V +++    D  +        + LC G
Sbjct: 75  KANYPLEKSILSRDKAL-----ELMRQKDEDYKVELINDLPSDEEISFYTQGEFTDLCAG 129

Query: 697 THVSSTGEIMLLYIVS 712
            HV STG+I  + ++S
Sbjct: 130 PHVESTGKIKAIKLMS 145


>gi|284998171|ref|YP_003419938.1| Threonyl/alanyl tRNA synthetase, SAD [Sulfolobus islandicus
           L.D.8.5]
 gi|284446066|gb|ADB87568.1| Threonyl/alanyl tRNA synthetase, SAD [Sulfolobus islandicus
           L.D.8.5]
          Length = 236

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GG   DTG  I + G ++ + +  K+ E   + H I +   L     +
Sbjct: 27  VMLDKTAFYPGGGGLENDTGFLINERGEKINVIEA-KRGENGEILHKIDQNASLNVGDKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  + D       T  E
Sbjct: 86  IGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQAKDDFNVENKDTLIE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L    +  N+I+ + + +    + RE+A+   A   L  +   ++ +  +  E  G+   
Sbjct: 144 LI---NEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPIWRI-VEMPGIDIQ 199

Query: 692 ALCGGTHVSST---GEIMLLYIVSESSIR 717
           A  GG HV++T   GEI+LL + ++   R
Sbjct: 200 A-DGGPHVNNTKEIGEIVLLKVENKGKGR 227


>gi|197124734|ref|YP_002136685.1| phosphoesterase DHHA1 [Anaeromyxobacter sp. K]
 gi|196174583|gb|ACG75556.1| phosphoesterase DHHA1 [Anaeromyxobacter sp. K]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 150/384 (39%), Gaps = 33/384 (8%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D+T FY E GGQ  D G   G      + DVQ + +G  +H   +E        
Sbjct: 28  RPALVLDRTAFYPEGGGQPADRGRLGG----AAVVDVQ-EVDGEILH--ALEGTPPDAGA 80

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ----NGSCITPDGLRFDVTHSK 625
            +   +D   RR     H   HLL  A     G+H         +C     +  D   + 
Sbjct: 81  PVPGEVDAARRRDHLQQHHGQHLLSAAFEATAGAHTVSFHLGAETCT----IDLDAPPAS 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYE 684
            +  A L++ E   ND++ ++L V  R      A A  AA  L        R+V V +  
Sbjct: 137 -LGEARLRAAEARANDLVFRDLTVTARDF----APAELAALPLRKAPEKGARIVVVGDLA 191

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G V  ++ CGGTH   TG +  + ++      AG  R+E + G RA   L     +L +
Sbjct: 192 RGEVVDASPCGGTHPRRTGAVGAVAVLGAQKWGAGT-RVEFVCGARAVRALADARGRLAA 250

Query: 745 LASFLKVSQGNVVGRVEEIWEE--YRKLQLIHAKRKLQLNVED--LSCHKIADVNFMSHI 800
            A+ L+ +   V      +  E   R+  L      L     D   +      V  +   
Sbjct: 251 AAASLRCAPAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLAAAQPAGAVRAVLAP 310

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA---R 857
            +   +  L++V   L  + ++     +G  +E +A +      D       VD+    R
Sbjct: 311 PAPGAAGYLRAVAAGLAARGRA---AFLGAVEEGRAHLAFARPRDAGPGVTGVDMGARVR 367

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPN 881
            +A  LGG GGG  P +AQ  GP+
Sbjct: 368 EAAARLGGKGGGA-PDLAQGSGPD 390


>gi|84000115|ref|NP_001033162.1| alanyl-tRNA editing protein Aarsd1 isoform 1 [Bos taurus]
 gi|122138793|sp|Q32LK1|AASD1_BOVIN RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|81674607|gb|AAI09538.1| Alanyl-tRNA synthetase domain containing 1 [Bos taurus]
          Length = 444

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 19/262 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G  I D   L++T    +A+          +
Sbjct: 35  KEVLSG--FQVVLEDTLLFPEGGGQPDDRG-TINDISVLRVTRRGTQADHF-------TQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          +  D  
Sbjct: 85  TPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADDLFGLKTTSWELGRLRSVIELD-- 142

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV 681
            S  +T+ ++ +IE +VN+ I   LPV  R ++ +D  +       L   +   +RVV++
Sbjct: 143 -SPTVTAEQVAAIERSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTI 201

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           E  D     S +C GTHVS+  ++ ++ I+     +     +  + G R    +      
Sbjct: 202 ESVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGI 256

Query: 742 LKSLASFLKVSQGNVVGRVEEI 763
            K+L + LK    + V  V+++
Sbjct: 257 EKALTALLKCGAEDHVEAVKKL 278


>gi|227827921|ref|YP_002829701.1| threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.14.25]
 gi|229585188|ref|YP_002843690.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.27]
 gi|227459717|gb|ACP38403.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.14.25]
 gi|228020238|gb|ACP55645.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.27]
          Length = 236

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GG   D G  I + G ++ +T+  K+ E   + H I +   L     +
Sbjct: 27  VMLDKTAFYPGGGGLENDIGFLINERGEKINVTEA-KRGENGEILHKIDQNASLNVGDKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  + D       T  E
Sbjct: 86  IGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQAKDDFNVENKDTLIE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L    +  N+I+ + + +    + RE+A+   A   L  +   ++ +  +  E  G+   
Sbjct: 144 LI---NEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPIWRI-VEIPGIDIQ 199

Query: 692 ALCGGTHVSST---GEIMLLYIVSESSIR 717
           A  GG HV++T   GEI+LL + ++   R
Sbjct: 200 A-DGGPHVNNTKEIGEIVLLKVENKGKGR 227


>gi|227830643|ref|YP_002832423.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           L.S.2.15]
 gi|229579527|ref|YP_002837925.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.G.57.14]
 gi|227457091|gb|ACP35778.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           L.S.2.15]
 gi|228010241|gb|ACP46003.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.G.57.14]
          Length = 236

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 12/209 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GG   DTG  I + G ++ + +  K+ E   + H I +   L     +
Sbjct: 27  VMLDKTAFYPGGGGLENDTGFLINERGEKINVIEA-KRGENGEILHKIDQNASLNVGDKV 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  + D       T  E
Sbjct: 86  IGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQAKDDFNVENKDTLIE 143

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L    +  N+I+ + + +    + RE+A+   A   L  +   ++ +  +  E  G+   
Sbjct: 144 LI---NEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIPIWRI-VEIPGIDIQ 199

Query: 692 ALCGGTHVSST---GEIMLLYIVSESSIR 717
           A  GG HV++T   GEI+LL + ++   R
Sbjct: 200 A-DGGPHVNNTKEIGEIVLLKVENKGKGR 227


>gi|331089982|ref|ZP_08338872.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402896|gb|EGG82462.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 641

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 19/139 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  I  DG  +D+    P+T+ +L  IE  +  I+
Sbjct: 69  AFRHTASHIMAQAIKRLYPDAKLAIGPSIA-DGFYYDIDKETPLTAEDLDKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
            +NL +    M RE+AIA         + N+  +V  +E          Y  G    + L
Sbjct: 128 KENLEIKQYTMPREEAIA------YFKEKNEPYKVELIEDLPEGETISFYSQG--EFTDL 179

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G H+ +T  +    + S
Sbjct: 180 CAGPHLMTTKPVKAFKLTS 198


>gi|299535482|ref|ZP_07048804.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729243|gb|EFI69796.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 643

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 15/193 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R       KKA    ++  +V+      E + +  I   +   L 
Sbjct: 20  GTSTDDVALSISPGLR-------KKAYAGKINGVLVDLKTPIEEDATIAIITQDDEEALE 72

Query: 585 I-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I  HS  HL   A+  +        G  I   G  +D+    PIT+ +L +IE  +  II
Sbjct: 73  ILRHSTAHLTAQAIKRLFPDAKLGIGPVIE-GGFYYDIDSPTPITAEDLPAIEKEMKKII 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHV 699
           A+NL V  + ++R  A A      +G +Y   +       E   ++       LC G HV
Sbjct: 132 AENLEVERKNVSR--AEAQALYEEIGDEYKLELLEAIPADEQVSIYYQGEFFDLCRGIHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG++    ++S
Sbjct: 190 PSTGKLREFKLLS 202


>gi|76811885|ref|YP_332812.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|167910190|ref|ZP_02497281.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|217419457|ref|ZP_03450963.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|254190583|ref|ZP_04897090.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195041|ref|ZP_04901470.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|254260089|ref|ZP_04951143.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
 gi|76581338|gb|ABA50813.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|157938258|gb|EDO93928.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169651789|gb|EDS84482.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|217396761|gb|EEC36777.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|254218778|gb|EET08162.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
          Length = 243

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVH-----HAIVERG 563
            D+T FY   GGQ GD+G     G         +KA+         VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAALAAG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   +LV  ID+  R +    H+A+HLL   L   +      +G  +T D +R D   
Sbjct: 90  V-KPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVR 677
            +PI   + + ++  + +++    PV T  +  ++ +A     L+ T          RVR
Sbjct: 143 VEPI---DREHVQARLAELVGGAHPVTTEWITDDEMVAR--PELVRTMSVKPPMGLGRVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++ +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 198 LLRIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|90021224|ref|YP_527051.1| threonyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123090560|sp|Q21KE0|SYT_SACD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89950824|gb|ABD80839.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Saccharophagus
           degradans 2-40]
          Length = 636

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  I  DG  +D  +S+  T  +L  IE+ + ++  
Sbjct: 71  IRHSTAHLLAQAVKQLFPEAQVTIGPVIE-DGFYYDFAYSRAFTPEDLVVIEEKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
            +  V  R++ R++A A      +G +Y  ++ + S+        Y+ G      LC G 
Sbjct: 130 ADFDVTRRVLPRDEASAYFRG--IGEEYKAQI-IDSIPANEELSLYKQGDFED--LCRGP 184

Query: 698 HVSSTGEI 705
           HV STG++
Sbjct: 185 HVPSTGKL 192


>gi|301167107|emb|CBW26686.1| threonyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 584

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 584 SINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +I HS  HL+  A+S +   +H+      +   G  +DV     +   +L+ IE  + ++
Sbjct: 8   TIRHSTAHLMAQAISRVFPDTHIQFGIGPVIEHGFYYDVDMDHRLVDEDLEKIEAEMQNL 67

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-------LCG 695
           I +NL +  ++M+R +A+          K ++  + +   +ED    S         LC 
Sbjct: 68  IKENLSIERKVMSRTEAL-----DFFKDKNDELKQDLINSFEDDAEISCYQQGEFIDLCR 122

Query: 696 GTHVSSTGEI 705
           G HV STG++
Sbjct: 123 GPHVESTGQL 132


>gi|315503581|ref|YP_004082468.1| threonyl/alanyl tRNA synthetase sad [Micromonospora sp. L5]
 gi|315410200|gb|ADU08317.1| Threonyl/alanyl tRNA synthetase SAD [Micromonospora sp. L5]
          Length = 245

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D++ FY   GGQ  D G  +  G++ +I   +K  +   +         + TE  +V
Sbjct: 35  IVLDRSAFYPGGGGQPPDHGVLLWQGVQTRIVGTRKGDDLWLIPPEGDPVPPVGTE--VV 92

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ++   R  L   HS  H+L   +    G+ V+  G  + P   R D   + P    + 
Sbjct: 93  GAVEDARRTMLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDF--NLPEVPPDF 148

Query: 633 KS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYED 685
           K+ IE+ VN  +A +  V  R++ R +A+A     ++ T+ N        VR+V +   D
Sbjct: 149 KARIEELVNAEVAADRSVAVRVLPRAEALA--LPDIIRTQSNLIPPEEQEVRIVDIVGLD 206

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             V +    GGTHV+ST +I  + +V   S     RR+
Sbjct: 207 --VQAD---GGTHVASTAQIGKVQVVKVESKGRANRRV 239


>gi|118103027|ref|XP_001235322.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           [Gallus gallus]
          Length = 539

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 89/195 (45%), Gaps = 9/195 (4%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +++L++D++ R      HS  HL+      + G   +          +  D   +  +T+
Sbjct: 219 AVLLSLDWERRFDHMQQHSGQHLITAIAEQMFGFKTTSWELGRQQSVIELD---TPSMTT 275

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            +++++E +VN+ I + +PV  R +  +D  + +  +  L   +   VRVV +E    G+
Sbjct: 276 EQMEALEQSVNEKIRERIPVTVRELAADDPEVETVRSRGLPGDHTGPVRVVDIE----GI 331

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S+ +C GTHVS+  ++ ++ ++     +     +  + G R    +       K+L S 
Sbjct: 332 DSN-MCCGTHVSNLSDLQVIKLICTEKGKKNKTNLVFLAGNRVLKSVEQSHRTEKALTSL 390

Query: 749 LKVSQGNVVGRVEEI 763
           LK   G  V  V+ +
Sbjct: 391 LKNGPGEHVEAVKRL 405


>gi|298246147|ref|ZP_06969953.1| Threonyl/alanyl tRNA synthetase SAD [Ktedonobacter racemifer DSM
           44963]
 gi|297553628|gb|EFH87493.1| Threonyl/alanyl tRNA synthetase SAD [Ktedonobacter racemifer DSM
           44963]
          Length = 238

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 19/209 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  D T F+   GGQ  D G    DG   Q+T V K    ++ H    E   + + +  V
Sbjct: 28  VALDATAFFPGGGGQPHDLGTLSQDGQTWQVTKVSKDERYVW-HQVEGEPPAIGSRVHGV 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L  D++ R  L   H+A H+L   +    G+ V+  G  + P   R D      + +  +
Sbjct: 87  L--DWERRYALMRTHTAMHILCGVVWRDYGAKVT--GGNMEPLRGRMDFEFEN-LRAELV 141

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDG 686
           + IE  +N  IA+     TR+     A A     L+ TK +        VRV+ +E    
Sbjct: 142 QEIEQRINAEIAEAR--ATRVYFLPRAEADQNPDLIRTKVSLLPADMTTVRVLEIE---- 195

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G+   A  GGTHV++T E+  + +V+  S
Sbjct: 196 GLDIQA-DGGTHVANTHEVERIRVVNYKS 223


>gi|293556705|ref|ZP_06675269.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601167|gb|EFF31455.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 646

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSIN 586
           G T  AI + I   +    KKA    V+  +V+  R I       ++T D+++   L + 
Sbjct: 17  GTTTLAIAESISKSLA---KKALAGKVNGKLVDLTRPIEENASIEIITPDHEDALGL-VR 72

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQ 645
           HSA HL+  A+  +  +     G  I   G  +D  + +  +T+ +L +IE  +  I+ +
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAID-SGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKE 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSSTG 703
           NLP+  R++++++A+   A+     +    +    V   Y+ G      LC G HV STG
Sbjct: 132 NLPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEFID--LCRGPHVPSTG 189

Query: 704 EIMLLYIVS 712
            I +  ++S
Sbjct: 190 RIQVFKLLS 198


>gi|261406470|ref|YP_003242711.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261282933|gb|ACX64904.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 636

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  HL+  A+  + GS     G   +  DG  +D+     IT+ +L +IE  +  I+ +
Sbjct: 74  HSTAHLMAQAVKRLYGSESVHLGVGPVIEDGFYYDMDLGHSITADDLITIEREMQKIVQE 133

Query: 646 NLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +LP++ + + R++A          +   +      V+SV YE G      LC G H+ ST
Sbjct: 134 DLPILRKEVGRKEAERIFQDDPYKMELIRELPEDEVISV-YEQGEF--VDLCRGPHLPST 190

Query: 703 GEIMLLYIVS 712
           G I    ++S
Sbjct: 191 GRIKAFKLMS 200


>gi|194098020|ref|YP_002001068.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|193933310|gb|ACF29134.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
          Length = 648

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIEDMPEVEAMGIYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|53718817|ref|YP_107803.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|67642225|ref|ZP_00440985.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|121599376|ref|YP_992436.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|124384495|ref|YP_001026760.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|126448767|ref|YP_001079954.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|134283926|ref|ZP_01770622.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|167000948|ref|ZP_02266749.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
 gi|167718807|ref|ZP_02402043.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167823415|ref|ZP_02454886.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 9]
 gi|167893507|ref|ZP_02480909.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167901958|ref|ZP_02489163.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|226195349|ref|ZP_03790938.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811549|ref|YP_002896000.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|254175671|ref|ZP_04882331.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|254202143|ref|ZP_04908506.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|254207471|ref|ZP_04913821.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|254298500|ref|ZP_04965952.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|254359890|ref|ZP_04976160.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|52209231|emb|CAH35176.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|121228186|gb|ABM50704.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei SAVP1]
 gi|124292515|gb|ABN01784.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126241637|gb|ABO04730.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134244715|gb|EBA44813.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|147746390|gb|EDK53467.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|147751365|gb|EDK58432.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|148029130|gb|EDK87035.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|157808398|gb|EDO85568.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|160696715|gb|EDP86685.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|225932551|gb|EEH28549.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506122|gb|ACQ98440.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|238523324|gb|EEP86763.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|243063247|gb|EES45433.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
          Length = 243

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVH-----HAIVERG 563
            D+T FY   GGQ GD+G     G         +KA+         VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAALAAG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   +LV  ID+  R +    H+A+HLL   L   +      +G  +T D +R D   
Sbjct: 90  V-KPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVR 677
            +PI   + + ++  + +++    PV T  +  ++ +A     L+ T          RVR
Sbjct: 143 VEPI---DREHVQARLAELVGGAHPVTTEWITDDEMVAR--PELVRTMSVKPPMGLGRVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++ +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 198 LLRIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|320451414|ref|YP_004203510.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151583|gb|ADW22961.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 659

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 23/197 (11%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER-GILRTEMSLVLTIDYQNRR 581
           E G    D   AIG G+        K A G  V+  + +    L     + +  +     
Sbjct: 14  EEGATAWDVARAIGPGL-------AKAAVGALVNGEVYDLLKPLPPGAQVRILTEKDPEY 66

Query: 582 QLSINHSATHLLHHALSTILGSH------VSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           QL   H+  H+L  A+             V      +   G  +D+   +PI+  +L +I
Sbjct: 67  QLLFRHTLAHVLAQAVKEFFAEKGYDPESVKLGVGPVIEKGFYYDIDAPEPISDEDLPAI 126

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDRVRVVSVEYEDGGV 688
           E+ +  IIA++LP+   ++ RE A++            +L    ++ +       E  G 
Sbjct: 127 EEKMRAIIAKDLPLRRYVLPREVALSRYQGKDPYKTELILDLPEDEEISFYQQGDEAYGF 186

Query: 689 HSSALCGGTHVSSTGEI 705
             + LC G HV STG I
Sbjct: 187 --TDLCRGPHVPSTGRI 201


>gi|222151594|ref|YP_002560750.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|222120719|dbj|BAH18054.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I  +G  +D+     I+S +L  IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRMYGDVHFGVGPVIE-EGFYYDIDTEHKISSEDLPEIEKTMRQIVG 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  R+++RE+A    A      +  D +     E E   ++S    + LC G HV 
Sbjct: 132 ENIKIERRVVSREEAKKIFADDPYKMELIDAI----PEDEHVTIYSQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|77627733|ref|NP_001029281.1| alanyl-tRNA editing protein Aarsd1 [Rattus norvegicus]
 gi|81883726|sp|Q5XI97|AASD1_RAT RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|54035303|gb|AAH83790.1| Alanyl-tRNA synthetase domain containing 1 [Rattus norvegicus]
 gi|149054301|gb|EDM06118.1| similar to hypothetical protein MGC2744, isoform CRA_a [Rattus
           norvegicus]
          Length = 412

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 114/274 (41%), Gaps = 34/274 (12%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G  I D   L++T  ++ A+        +  
Sbjct: 35  KEVLSG--FQVVLEDTLLFPEGGGQPDDRG-TINDISVLRVT--RRGAQADHFTQTPLSP 89

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ----NGSCITPDGLR 618
           G       + + +D++ R      HS  HL+      + G   +        C+    + 
Sbjct: 90  G-----SQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWELGKLRCV----IE 140

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
            D   S  +T+ ++ +IE +VN  I   LPV  R ++ +D  +       L   +   +R
Sbjct: 141 LD---SPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV++E  D     S +C GTHV++  ++ ++ I+     +     +  + G R    +  
Sbjct: 198 VVTIEGVD-----SNMCCGTHVNNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMER 252

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
                K+L S LK          E+  E  +KLQ
Sbjct: 253 SHGSEKALTSLLKCG-------AEDHVEAVKKLQ 279


>gi|71899804|ref|ZP_00681954.1| TGS [Xylella fastidiosa Ann-1]
 gi|71730395|gb|EAO32476.1| TGS [Xylella fastidiosa Ann-1]
          Length = 332

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVIA-DGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA----------- 692
           Q+  VV  I  R D +      L   +  D ++R++    ED G   +A           
Sbjct: 131 QDYDVVKHITARHDVV-----RLFKERGEDYKLRLI----EDMGPEVTAMGIYHHQEYVD 181

Query: 693 LCGGTHVSST 702
           +C G HV +T
Sbjct: 182 MCRGPHVPNT 191


>gi|303257521|ref|ZP_07343533.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000214|ref|ZP_08323898.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859491|gb|EFL82570.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329572380|gb|EGG54033.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 641

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +HL+  A+  +        G  I  +G  +D +  K +T+ +L  IE  +++I+ 
Sbjct: 71  IRHSTSHLMAQAVKELYPEAQITIGPVIE-NGFYYDFSLPKHLTNEDLPLIEKKMDEIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++LP+V   M+R++A+    +  +G  Y   +         +S+ Y  G      LC G 
Sbjct: 130 RDLPIVREEMDRDEAVKYFNS--IGEHYKAEIIGSIPAGETISL-YRQGDY--VDLCRGP 184

Query: 698 HVSSTGEI 705
           HV STG +
Sbjct: 185 HVPSTGRL 192


>gi|313896316|ref|ZP_07829869.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975115|gb|EFR40577.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 639

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 582 QLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +L++ H+ +H++  A+  +   +HV         +G  +D      +T A+L+ IE  + 
Sbjct: 68  RLALRHTCSHIMAQAVKRLYKDAHVQLAIGPAIENGFYYDFDMEHRLTDADLRDIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALC 694
            I+ +NL +  R + R +AIA       G  Y  +V ++    ED  + +      + LC
Sbjct: 128 KIVKENLKLERREIPRSEAIAYFREK--GENY--KVELIEDLPEDVTISTYTQGEFTDLC 183

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG++  L + S
Sbjct: 184 AGPHVLSTGKVKALRLQS 201


>gi|182679322|ref|YP_001833468.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635205|gb|ACB95979.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 644

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 15/129 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+ T+        G  I  +G  +D   ++P T A+  +IE  + +IIA
Sbjct: 71  IRHDAAHVMAEAVQTLYPGTQVTIGPVIE-NGFYYDFYRNEPFTPADFAAIEKKMGEIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY----EDGGVHSSA----LCGG 696
           ++ P    + +R++A A          + +  +V  V+     ED  ++       LC G
Sbjct: 130 RDKPFTKEVWSRDEAKA------WFETHGEAFKVELVDSIPGNEDLKIYRQGEWLDLCRG 183

Query: 697 THVSSTGEI 705
            H+ STG+I
Sbjct: 184 PHLPSTGKI 192


>gi|167580389|ref|ZP_02373263.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis TXDOH]
          Length = 243

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 30/224 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVH-----HAIVERG 563
            D+T FY   GGQ GDTG     G         +KA+         VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDTGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAPLASG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   ++V  ID+  R +    H+A+HLL   L   +      +G  +T + +R D   
Sbjct: 90  V-KPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTAEYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRVV 679
            +PI   + + +E  + +++    PV T  I + E A        +  K      RVR++
Sbjct: 143 VEPI---DREQVETRLAELVGGAHPVTTEWITDEEMAARPELVRTMSVKPPMGLGRVRLL 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 200 RIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|288574759|ref|ZP_06393116.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570500|gb|EFC92057.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 630

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 20/128 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A + +    V   G  I  DG  +D+   +PI+ A+L ++E  +  I+ 
Sbjct: 68  LRHSTAHLLAQAATRLFPGAVVAIGPVIK-DGFYYDIEFKEPISEADLPALEKEMRRIVK 126

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----------LC 694
           + +P+  + ++RE+AI           + +R  +  VE  +G    S           LC
Sbjct: 127 RGIPLKRQRVSREEAIEL---------FKERKDLYKVEILEGIDDDSVNLYWQDEYVDLC 177

Query: 695 GGTHVSST 702
            G HV +T
Sbjct: 178 RGPHVPNT 185


>gi|71275167|ref|ZP_00651454.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|170731158|ref|YP_001776591.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|238687955|sp|B0U5E3|SYT_XYLFM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71163976|gb|EAO13691.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|167965951|gb|ACA12961.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVIA-DGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA----------- 692
           Q+  VV  I  R D +      L   +  D ++R++    ED G   +A           
Sbjct: 131 QDYDVVKHITARHDVV-----RLFKERGEDYKLRLI----EDMGPEVTAMGIYHHQEYVD 181

Query: 693 LCGGTHVSST 702
           +C G HV +T
Sbjct: 182 MCRGPHVPNT 191


>gi|320353536|ref|YP_004194875.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122038|gb|ADW17584.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 641

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  + G  V         DG  +D    KP +S E + IE  + ++  
Sbjct: 74  LRHSTAHIMALAVKELFGDQVKVAIGPAIEDGFYYDFDREKPFSSEEFEQIEAKMAELAN 133

Query: 645 QNLPVVTRIMNREDAI----ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             LP V + M +E+AI      G    L          VS+ Y  GG     LC G HV 
Sbjct: 134 ARLPFVRQEMPKEEAIRFFEQHGEIYKLELLREMEAETVSL-YTHGGF--VDLCRGPHVP 190

Query: 701 STGEIMLLYIV 711
            +  I +  ++
Sbjct: 191 DSSWIKVFKLL 201


>gi|167918222|ref|ZP_02505313.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei BCC215]
          Length = 243

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVH-----HAIVERG 563
            D+T FY   GGQ GD+G     G         +KA+         VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAALAAG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   +LV  ID+  R +    H+A+HLL   L   +      +G  +T D +R D   
Sbjct: 90  V-KPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVR 677
            +PI   + + ++  + +++    PV T  +  ++ +A     L+ T          RVR
Sbjct: 143 VEPI---DREHVQARLAELVGGAHPVTTEWITDDEMVAR--PELVRTMSVKPPMGLGRVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++ +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 198 LLRIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|28199783|ref|NP_780097.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682533|ref|YP_001830693.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130161|sp|Q87AB2|SYT_XYLFT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691115|sp|B2I9P8|SYT_XYLF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28057904|gb|AAO29746.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632643|gb|ACB93419.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578811|gb|ADN62780.1| threonyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVIA-DGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA----------- 692
           Q+  VV  I  R D +      L   +  D ++R++    ED G   +A           
Sbjct: 131 QDYDVVKHITARHDVV-----RLFKERGEDYKLRLI----EDMGPEVTAMGIYHHQEYVD 181

Query: 693 LCGGTHVSST 702
           +C G HV +T
Sbjct: 182 MCRGPHVPNT 191


>gi|240115143|ref|ZP_04729205.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|291044371|ref|ZP_06570080.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011265|gb|EFE03261.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|295399484|ref|ZP_06809466.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109958|ref|YP_003988274.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978950|gb|EFG54546.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215059|gb|ADP73663.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 644

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 21/132 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+   L  +V      +  +G  +D+   + +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKR-LYKNVKLGVGPVIENGFYYDIDMEESLTPEDLPKIEQEMRKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-----------VSVEYEDGGVHSSAL 693
           +NL +V + ++RE+AI       L  +  D +++           +S+ YE G      L
Sbjct: 133 ENLEIVRKEVSREEAIR------LYEEIGDNLKLELINDIPEGETISI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEI 705
           C G HV STG+I
Sbjct: 184 CRGVHVPSTGKI 195


>gi|240080190|ref|ZP_04724733.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|227519418|ref|ZP_03949467.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307280591|ref|ZP_07561639.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|227073125|gb|EEI11088.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306503957|gb|EFM73174.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|315145737|gb|EFT89753.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315151718|gb|EFT95734.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315173904|gb|EFU17921.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 660

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|312898595|ref|ZP_07757985.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620514|gb|EFQ04084.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 24/194 (12%)

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSINHSA 589
           GC++GD +      + KK     V   + +  R +        LT + Q  +  ++ H+A
Sbjct: 17  GCSLGDAVAQLSNSLAKKVLVAKVDGEVTDLRRPVKDGSTVEFLTFESQEGKD-ALRHTA 75

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           +H++  A+  +        G  I  +G  +D       T  +  +IE  ++ I+ +NLPV
Sbjct: 76  SHIMAQAVRRLFKDVKVAIGPAIE-NGFYYDFDTEHRFTKDDFAAIEAEMHKIVKENLPV 134

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRV-----------VSVEYEDGGVHSSALCGGTH 698
               ++R +A+A      +  K N+  +V           +SV Y  G  +   LC G H
Sbjct: 135 TYEEVSRAEALA------MFEKENEIYKVELIKDLPEDATISV-YRQGDFYD--LCAGPH 185

Query: 699 VSSTGEIMLLYIVS 712
           V +TG++    ++S
Sbjct: 186 VMTTGQVKAFKLLS 199


>gi|240122983|ref|ZP_04735939.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|90407604|ref|ZP_01215785.1| Predicted metal-dependent hydrolase [Psychromonas sp. CNPT3]
 gi|90311307|gb|EAS39411.1| Predicted metal-dependent hydrolase [Psychromonas sp. CNPT3]
          Length = 241

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 81/199 (40%), Gaps = 12/199 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM- 569
           V V  D T FY + GGQ  D G  I DG   Q+   +   EGI   H +     L T   
Sbjct: 29  VAVYCDNTIFYPQGGGQPCDLGVFIIDGCAHQVYHTETTVEGI--SHMLKSHPSLLTCTG 86

Query: 570 -SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  ID Q R   +  H+A HL+ H + T L  ++S       P+G   ++  SK   
Sbjct: 87  KQCIQHIDIQRRLFNAKLHTAGHLISHIVET-LDHNLSPVKGHHYPNGSYIEMIESKKTN 145

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDG 686
              L    +   D      P   +    + A       LL      + R+R+++V   DG
Sbjct: 146 DTFLVEWINEKIDAFVDTSPRKIQSFELDLAEVKSLRPLLSPFIPQSTRIRMIAV---DG 202

Query: 687 GVHSSALCGGTHVSSTGEI 705
              +   CGGTHV+ T ++
Sbjct: 203 --FTPVPCGGTHVNCTSKL 219


>gi|288818602|ref|YP_003432950.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788002|dbj|BAI69749.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752193|gb|ADO45676.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 637

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 35/208 (16%)

Query: 511 VEVVFDQTPFYAEAGGQLGD------TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           + VV +   +  EAG  LG+         A+G  +  +I D+Q                 
Sbjct: 2   IRVVIEDKVYEVEAGTPLGEIYQMAGVENAVGGKVNGKIYDLQTP--------------- 46

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDV-T 622
           +R + ++V            + HS  H++  AL  I G      G    T +G  +DV  
Sbjct: 47  IREDANIVPIYKSDPESLEILRHSLAHIMAQALKEIYGKEKVHLGVGPTTEEGFYYDVEI 106

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV------ 676
               ++  +L  IE+ + +II +N P++ R ++RE+AI       L  KY   +      
Sbjct: 107 EGVRLSEDDLSKIEEKMREIIQRNYPILRRELDREEAIK--LFEKLREKYKLEIIKGISP 164

Query: 677 -RVVSVEYEDGGVHSSALCGGTHVSSTG 703
             V+SV  ++  V    LC G H+ +TG
Sbjct: 165 DDVISVYEQNDFVD---LCRGPHLPTTG 189


>gi|229549033|ref|ZP_04437758.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|312904390|ref|ZP_07763551.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|229305826|gb|EEN71822.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|310632289|gb|EFQ15572.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315162804|gb|EFU06821.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315576849|gb|EFU89040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 660

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|71898248|ref|ZP_00680422.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|71731987|gb|EAO34044.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVIA-DGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA----------- 692
           Q+  VV  I  R D +      L   +  D ++R++    ED G   +A           
Sbjct: 131 QDYDVVKHITARHDVV-----RLFKERGEDYKLRLI----EDMGPEVTAMGIYHHQEYVD 181

Query: 693 LCGGTHVSST 702
           +C G HV +T
Sbjct: 182 MCRGPHVPNT 191


>gi|312901397|ref|ZP_07760674.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|311291473|gb|EFQ70029.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
          Length = 626

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 73  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 125

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 126 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 185

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 186 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 220


>gi|261208968|ref|ZP_05923373.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289565220|ref|ZP_06445672.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294615018|ref|ZP_06694907.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260077007|gb|EEW64729.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289163041|gb|EFD10889.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592149|gb|EFF23769.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 647

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSIN 586
           G T  AI + I   +    KKA    V+  +V+  R I       ++T D+++   L + 
Sbjct: 17  GTTTLAIAESISKSLA---KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGL-VR 72

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQ 645
           HSA HL+  A+  +  +     G  I   G  +D  + +  +T+ +L +IE  +  I+ +
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAID-SGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKE 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSSTG 703
           NLP+  R++++++A+   A+     +    +    V   Y+ G      LC G HV STG
Sbjct: 132 NLPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEFID--LCRGPHVPSTG 189

Query: 704 EIMLLYIVS 712
            I +  ++S
Sbjct: 190 RIQVFKLLS 198


>gi|227554282|ref|ZP_03984329.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229544818|ref|ZP_04433543.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|307289786|ref|ZP_07569723.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|227176572|gb|EEI57544.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229310090|gb|EEN76077.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|306499171|gb|EFM68649.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030800|gb|EFT42732.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315575247|gb|EFU87438.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315582393|gb|EFU94584.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 660

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|298369384|ref|ZP_06980702.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283387|gb|EFI24874.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+   KP T  ++ +IE  + ++I 
Sbjct: 82  IRHSCAHLIGHAVKQLYPNAKMVIGPVIE-DGFYYDIATDKPFTPDDVAAIEARMKELIN 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R + I +      G +Y  R+     E E+ G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAETIKTFQER--GEEYKLRLIDDMPEVEEMGLYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|240127689|ref|ZP_04740350.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 648

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|69245748|ref|ZP_00603614.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880251|ref|ZP_05659904.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257883051|ref|ZP_05662704.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257891365|ref|ZP_05671018.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257893638|ref|ZP_05673291.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614441|ref|ZP_05712211.1| threonyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560451|ref|ZP_05832625.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293563269|ref|ZP_06677719.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294621403|ref|ZP_06700575.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939207|ref|ZP_07846461.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942550|ref|ZP_07849386.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948402|ref|ZP_07851791.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951256|ref|ZP_07854311.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991679|ref|ZP_07857149.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314996805|ref|ZP_07861818.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195641|gb|EAN10081.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814479|gb|EEV43237.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818709|gb|EEV46037.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257827725|gb|EEV54351.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830017|gb|EEV56624.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073453|gb|EEW61781.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291599050|gb|EFF30095.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291604721|gb|EFF34205.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313589100|gb|EFR67945.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593770|gb|EFR72615.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596608|gb|EFR75453.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313598686|gb|EFR77531.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313641458|gb|EFS06038.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645194|gb|EFS09774.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 646

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQNRRQLSIN 586
           G T  AI + I   +    KKA    V+  +V+  R I       ++T D+++   L + 
Sbjct: 17  GTTTLAIAESISKSLA---KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGL-VR 72

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQ 645
           HSA HL+  A+  +  +     G  I   G  +D  + +  +T+ +L +IE  +  I+ +
Sbjct: 73  HSAAHLMAQAMRRLYPNIHFGVGPAID-SGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKE 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSSTG 703
           NLP+  R++++++A+   A+     +    +    V   Y+ G      LC G HV STG
Sbjct: 132 NLPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEFID--LCRGPHVPSTG 189

Query: 704 EIMLLYIVS 712
            I +  ++S
Sbjct: 190 RIQVFKLLS 198


>gi|327314142|ref|YP_004329579.1| alpha amylase catalytic domain-containing protein [Prevotella
           denticola F0289]
 gi|326944596|gb|AEA20481.1| alpha amylase, catalytic domain protein [Prevotella denticola
           F0289]
          Length = 721

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 574 TIDY----QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           T++Y     N+ +    H+A HLL+  +  + G+  S N            +   KP   
Sbjct: 566 TVEYVLNSHNKEEFPPAHTAEHLLNQVMFRLFGAARSTNAHIERKKSKMTFILDHKP-DR 624

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA++LPV   +++R       +   L    ++ +R+V +     G  
Sbjct: 625 KEKKAIEDEMNRLIAEDLPVTFELVDRNHLPEGVSLDRLPEDASEMLRLVRI-----GDF 679

Query: 690 SSALCGGTHVSSTGEI 705
               C G HV ST +I
Sbjct: 680 DVCPCIGRHVRSTAQI 695


>gi|325269899|ref|ZP_08136509.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324987872|gb|EGC19845.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  +  +G  +DV  +  + I+  +   IE+ + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAVE-NGFFYDVMPADGQTISENDFPKIEEKMRELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N PVV   +++ DAI    A   G +Y  +V  +  + EDG +      H + LC G H
Sbjct: 132 KNEPVVRHDVSKADAIKEFTAD--GQEY--KVEHIEQDLEDGTISTYTQGHFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LVSTGAIKAIKITS 201


>gi|13471046|ref|NP_102615.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|22654133|sp|Q98LR2|SYT_RHILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14021790|dbj|BAB48401.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 658

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +   IE  + +IIA
Sbjct: 74  IRHDTAHVLAEAVQELWPGTQVTIGPVIE-NGFYYDFARNEPFTPDDFPVIEKKMREIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +R+   A    A  G +Y   +     E +D  +++      LC G H++
Sbjct: 133 RNKPFTKEVWSRDK--AKKVFADKGERYKLELIDAIPEDQDLKIYAQGDWFDLCRGPHMA 190

Query: 701 STGEI 705
           STG+I
Sbjct: 191 STGQI 195


>gi|15920346|ref|NP_376015.1| alanyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|15621128|dbj|BAB65124.1| 207aa long hypothetical alanyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 207

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 20/196 (10%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+T FY   GG   D G  I +G ++++ +V K+ +G   H A         E++ V  
Sbjct: 3   LDKTAFYPGGGGVENDKGYFIFNGNKIEVNNV-KEIDGEIAHEATSVPFKEGDEITGV-- 59

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR--FDVTHSKPITSAEL 632
           ID++ R ++   H+A+H++     +   S ++  G  I+P+  +  FD+         +L
Sbjct: 60  IDWERRYRMMRLHTASHIIAAIAYSKYNSKIT--GGNISPEYAKDDFDIDDKN-----KL 112

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVH 689
             I    N+I  + +PV    + +E+A+       L  +    +   R+V +E    G+ 
Sbjct: 113 LEIVKEANEIAKKGIPVKIYFLKKEEALKIPGIVKLAERMPPNIDIWRIVEIE----GID 168

Query: 690 SSALCGGTHVSSTGEI 705
             A  GG HVS+T EI
Sbjct: 169 IQA-DGGPHVSNTLEI 183


>gi|113954220|ref|YP_731070.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031674|sp|Q0I902|SYT_SYNS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113881571|gb|ABI46529.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 617

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL    ++   L I HS +H++  A+  +        G   T  G  +D  + +P T A
Sbjct: 23  VVLPKTSESENLLKIRHSMSHVMAMAVQKLFPKAQVTIGPW-TEAGFYYDFDNPEPFTEA 81

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVH 689
           +LK+I+  +  II + LP+    ++RE+A     A     K     R+V  +     G  
Sbjct: 82  DLKAIKKEMGKIIGRKLPLERIEVSREEAERRIKAQNEPYKLEILERLVEPITLYTLGEQ 141

Query: 690 SSALCGGTHVSSTGEI 705
              LC G HV++T E+
Sbjct: 142 WWDLCAGPHVANTSEL 157


>gi|262374306|ref|ZP_06067582.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262310864|gb|EEY91952.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           ++  +V+   L TE + V  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  INDRLVDACDLITEDATVQIITPKDEEGLVIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ IA   A   G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIAEFTAR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+          G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLIADMPNETQMGLYYHQDYLDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|260583498|ref|ZP_05851246.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158124|gb|EEW93192.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 647

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++T D+++   + + HS  HLL HAL+ +  G H    G  I   G  +D      +T  
Sbjct: 59  IVTPDHEDALGI-LRHSTAHLLAHALTRLYPGIHFGV-GPAIE-SGFYYDTDMPNQLTED 115

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----EYEDG 686
            L  +E  +  I+ +N P+V R ++R +A+   A        ND  +V  +    E E  
Sbjct: 116 ALPEVEAEMMKIVKENYPIVRREVSRAEALEIFA--------NDPYKVELINGLPEDETI 167

Query: 687 GVHSSA----LCGGTHVSSTGEIMLLYIVS 712
            V+       LC G HV STG I +  ++S
Sbjct: 168 SVYQQEDFVDLCRGIHVPSTGRIQVFKLLS 197


>gi|241668765|ref|ZP_04756343.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877296|ref|ZP_05250006.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843317|gb|EET21731.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 13/144 (9%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E+ L+ T D +    L   HS  HLL +A+  +  +     G  I  +G  +D +  + I
Sbjct: 56  ELRLITTKDTEGLEIL--RHSCAHLLANAVKELYPNTEVTIGPVID-NGFYYDFSFKETI 112

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE---- 682
             A+L +IE  + +I  + + +  R++++EDAIA   A   G  Y  D +  +  +    
Sbjct: 113 GEADLANIEKRMKEIAKKGISISYRVVSKEDAIAFFKAQ--GENYKVDIIESIPADQQIK 170

Query: 683 -YEDGGVHSSALCGGTHVSSTGEI 705
            Y  G    S LC G HV ST  I
Sbjct: 171 IYTQGDF--SDLCRGPHVPSTAAI 192


>gi|119719938|ref|YP_920433.1| threonyl/alanyl tRNA synthetase, SAD [Thermofilum pendens Hrk 5]
 gi|119525058|gb|ABL78430.1| Ala-tRNA(Pro) hydrolase [Thermofilum pendens Hrk 5]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 506 VSGQKVEVVFDQTPFY-AEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           VSG KV    DQT F+   +GG   D G   +  G R+++  VQ   EG  V H +    
Sbjct: 22  VSGNKV--FLDQTAFHPGPSGGLDTDKGWLVLPTGDRVEV--VQALEEGGDVAHVLARAV 77

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR--FDV 621
            L+    +   ID++ R ++   H+A+H+L   L    G+ V+  G  I P+  +  FD+
Sbjct: 78  NLKPGDRVRGVIDWERRYRMMKLHTASHVLAAVLYKKYGALVT--GGHIQPEEAKDDFDL 135

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLG--TKYNDRVRV 678
           +  +   +A  +++E+  N II   L V    ++R++A+   G   L G      +++R+
Sbjct: 136 SGVEDWKAAFQQAVEET-NRIIGGCLEVKVYWLSRDEALKIPGIVKLAGRLPPEVEKLRI 194

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEI 705
           V +     GV   A  GG HV +T EI
Sbjct: 195 VEIP----GVDVQA-DGGPHVKNTCEI 216


>gi|315158985|gb|EFU03002.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0312]
          Length = 660

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|315033108|gb|EFT45040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0017]
          Length = 672

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 79  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 131

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 132 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 191

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 192 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 226


>gi|296329384|ref|ZP_06871884.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153504|gb|EFG94322.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 118/273 (43%), Gaps = 37/273 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I D     I +V++       +  I+++ +
Sbjct: 11  ISDKTYEIL--TSPFYVDGKGGQLGDRG-TIFDA---NIVEVKE-------NLVILDKDL 57

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
              E S    I+ + R  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 58  EDGEYSYF--INEKRREDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   +  +E+ VN  I  ++ +   I   E+A         +  K    +R
Sbjct: 112 -----QKDISKEIIDKLEELVNKDIKADIVIEEEIYTNEEAHKIENLRKAIKDKIKGDIR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T EI +  +++  +++    R   + G+RA++    
Sbjct: 167 FIKI----GNIDICA-CAGFHVSRTSEIEIFKLINYENVKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + + +K L +        ++  +++   E  K+
Sbjct: 222 KHDIIKKLTNVFSCKDDEILEMLDKSLAEKAKI 254


>gi|268596339|ref|ZP_06130506.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268550127|gb|EEZ45146.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 638

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 131 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 188

Query: 701 ST 702
           +T
Sbjct: 189 NT 190


>gi|195340984|ref|XP_002037092.1| GM12293 [Drosophila sechellia]
 gi|194131208|gb|EDW53251.1| GM12293 [Drosophila sechellia]
          Length = 436

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 110/268 (41%), Gaps = 35/268 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  ++
Sbjct: 43  VTCEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GSTAVHFVESTTSFEQDAEVL 96

Query: 573 LTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           LT+DYQ R      HS  HL+         +   S  LGS VS              ++ 
Sbjct: 97  LTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVS-----------YIQLST 145

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVS 680
           S  I+   L  IE   ND+I +   V   +++ + A     A        D V   RVV 
Sbjct: 146 SHLISRESLDLIERQANDLIREGREVTVLLVDPKVAQEFQDARAPRGLPKDHVGLARVVR 205

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E    G+ S+ +C GTHV++  ++  + ++    +++ +  +  + G+R    L    +
Sbjct: 206 IE----GIESN-MCCGTHVTNLSQLQCIKLLYAEKVKSNV-LVHFVVGERVLVKLGEVFQ 259

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           + + L   LK   G  +  V+++ +  +
Sbjct: 260 REQQLTQALKGGPGQHLELVQKLQQNVK 287


>gi|19703862|ref|NP_603424.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714020|gb|AAL94723.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 118/273 (43%), Gaps = 37/273 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           +S +  E++   +PFY +  GGQLGD G  I D     I +V++       +  I+++ +
Sbjct: 11  ISDKTYEIL--TSPFYVDGKGGQLGDRG-TIFDA---NIVEVKE-------NLVILDKDL 57

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLR 618
              E S    I+ + R  +   H+A H+       +  L+T+ G  +++  + +  D   
Sbjct: 58  EDGEYSYF--INEKRREDIRQQHTAQHIFSAEAYNNFGLNTV-GFRMAEEYTTVDLD--- 111

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677
                 K I+   +  +E+ VN  I  ++ +   I   E+A         +  K    +R
Sbjct: 112 -----QKDISKEIIDKLEELVNKDIKADIVIEEEIYTNEEAHKIENLRKAIKDKIKGDIR 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            + +    G +   A C G HVS T EI +  +++  +++    R   + G+RA++    
Sbjct: 167 FIKI----GNIDICA-CAGFHVSRTSEIEIFKLINYENVKGNYTRFYFLAGERAKADYNK 221

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + + +K L +        ++  +++   E  K+
Sbjct: 222 KHDIIKKLTNVFSCKDDEILEMLDKSLAEKAKI 254


>gi|307564422|ref|ZP_07626963.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346782|gb|EFN92078.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 650

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 16/157 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVND 641
           S  HS+ HLL  AL  +        G  +  +G  +DV  +   PI+  +   IE  + +
Sbjct: 70  SFWHSSAHLLAEALKELYPGIQFGFGPALE-NGFFYDVQTADGTPISENDFPKIEAKMME 128

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCG 695
           +  +N P++ R +++ +AI    A   G +Y  +V  +  + EDG + + +      LC 
Sbjct: 129 LAKKNSPIIRREVSKAEAIKEFKAD--GQEY--KVEHIEKDLEDGTISTYSQGNFTDLCR 184

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           G H+ STG   L+  V  +S+     R +A   Q  R
Sbjct: 185 GPHLVSTG---LIKAVKLTSVAGAFWRGDAKNAQLTR 218


>gi|260433159|ref|ZP_05787130.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416987|gb|EEX10246.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 652

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 15/129 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 78  IRHDFAHVMARAVQEIWPDTKVTIGPVIE-NGWYYDFDRAEPFTPEDLGLIEKKMKEIIN 136

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGG 696
           +  PV T I +RE AIA   A       N+  +V  +E   G          H   LC G
Sbjct: 137 KRDPVTTEIWDRERAIAFYKAN------NEPYKVELIEAIPGDEPVRMYWHGHWQDLCRG 190

Query: 697 THVSSTGEI 705
            H+  TG++
Sbjct: 191 PHLQHTGQL 199


>gi|190346550|gb|EDK38661.2| hypothetical protein PGUG_02759 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 20/261 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V    T  + E GGQ  DTG   + D  ++ ++ V +  EG+   H  +    +    ++
Sbjct: 64  VELKDTILFPEGGGQPYDTGSIVLPDSTKVSVSKVVR--EGVTALH--ITPTPIEPGTNV 119

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L I++  R    ++H   H   H LS +L S+  +       + + + V     ++   
Sbjct: 120 SLEINWDRR----LDHMQQHTGQHLLSAVLDSYKIETLGWSLGEKINY-VELPMKVSDEI 174

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGV 688
           ++ +   VND I + +P+   ++  +        + +   Y+     VRVV +     G 
Sbjct: 175 VEEVSRKVNDYIFKAIPI--EVVTPDQHGGELDISHIPEDYDLSKGVVRVVKI-----GD 227

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             +  C GTH++ST +I  + ++ +++IR G  R+    G R           LK+  + 
Sbjct: 228 LDANPCCGTHLTSTSQITAISLLHQTNIRGGNSRLHFCCGHRVAKLASESSAILKNAGAL 287

Query: 749 LKVSQGNVVGRVEEIWEEYRK 769
           L      +  ++E +   Y+K
Sbjct: 288 LSCQSDEITSKIELLNFNYKK 308


>gi|268681605|ref|ZP_06148467.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621889|gb|EEZ54289.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 637

 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|307272094|ref|ZP_07553357.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306511210|gb|EFM80217.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 660

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALEVFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  +   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITI---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|269214426|ref|ZP_05986526.2| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209844|gb|EEZ76299.1| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 643

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE S V  I  ++R  + I  HS  HL+ HA+  +  +     G  I  +G  +D+   K
Sbjct: 58  TEDSTVQIITPKDREGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEK 116

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P T  ++ +IE  + ++IAQ+  V+  +  R +A+        G +Y  R+     E E 
Sbjct: 117 PFTPEDVAAIEARMKELIAQDYDVIKIMTPRAEAVKIFQDR--GEEYKLRLIDDMPEVEA 174

Query: 686 GGVHSSA----LCGGTHVSST 702
            G++       +C G HV +T
Sbjct: 175 MGMYHHQEYVDMCRGPHVPNT 195


>gi|167043424|gb|ABZ08126.1| hypothetical protein ALOHA_HF4000APKG1C9ctg2g29 [uncultured marine
           microorganism HF4000_APKG1C9]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 20/218 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++  Q+  Y   GGQ GDTG  I DGI  + ++      G F+ H + E         + 
Sbjct: 30  LILSQSYCYPRGGGQPGDTGLFIRDGIGREFSETLG---GEFIRHPVDEIADFSVGDEVS 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             I+ + R + +  H+A H++      + G+     G+ I+ +  R D          + 
Sbjct: 87  CVINGERRNRHASMHTAQHIISALADDLWGAETV--GNQISTEYTRIDFLFPN-RDEYDS 143

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYED 685
           +++ D VN +I     V      R DA+      +  T + +R+       RVV +E  D
Sbjct: 144 ETLADAVNSVIGSGTLVNVHEWPR-DAVKE-HEHMRHTNFMERIPSSITELRVVEIEGID 201

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                   C GTHV ST ++  + I S  S  AG  RI
Sbjct: 202 -----LCPCAGTHVGSTNDLEPIVITSVKSKGAGKFRI 234


>gi|325857421|ref|ZP_08172476.1| alpha amylase, catalytic domain protein [Prevotella denticola CRIS
           18C-A]
 gi|325483131|gb|EGC86111.1| alpha amylase, catalytic domain protein [Prevotella denticola CRIS
           18C-A]
          Length = 721

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 574 TIDY----QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           T++Y     N+ +    H+A HLL+  +  + G+  S N            +   KP   
Sbjct: 566 TVEYVLNSHNKEEFPPAHTAEHLLNQVMFRLFGAARSTNAHIERKKSKMTFILDHKPDRK 625

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA++LPV   +++R       +   L    ++ +R+V +     G  
Sbjct: 626 EE-KAIEDEMNRLIAEDLPVTFELVDRNHLPEGVSLDRLPEDASEMLRLVRI-----GDF 679

Query: 690 SSALCGGTHVSSTGEI 705
               C G HV ST +I
Sbjct: 680 DVCPCIGRHVRSTAQI 695


>gi|319786721|ref|YP_004146196.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465233|gb|ADV26965.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 634

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 20/129 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVIA-EGFYYDIYSERPFTPDDMAAIEQRMRELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----------L 693
           Q+  VV ++  RE+ I    A   G  Y  ++R++    ED G   +A           +
Sbjct: 130 QDYDVVKKMTPREEVINVFKAR--GEDY--KLRLI----EDMGPEVTAMGLYYHQEYVDM 181

Query: 694 CGGTHVSST 702
           C G HV +T
Sbjct: 182 CRGPHVPNT 190


>gi|268686074|ref|ZP_06152936.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626358|gb|EEZ58758.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|255974800|ref|ZP_05425386.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256616698|ref|ZP_05473544.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|257081588|ref|ZP_05575949.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257084237|ref|ZP_05578598.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257417026|ref|ZP_05594020.1| threonyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|255967672|gb|EET98294.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596225|gb|EEU15401.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256989618|gb|EEU76920.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256992267|gb|EEU79569.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257158854|gb|EEU88814.1| threonyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|295113730|emb|CBL32367.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterococcus sp.
           7L76]
          Length = 645

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|257091083|ref|ZP_05585444.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|256999895|gb|EEU86415.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
          Length = 645

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|283797704|ref|ZP_06346857.1| threonine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074600|gb|EFE11964.1| threonine--tRNA ligase [Clostridium sp. M62/1]
          Length = 650

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T  ++  IE  +  I+
Sbjct: 76  ALRHTASHVMAQAVKRLYPDTKLAIGPSIA-DGFYYDVDPASPMTVEDMGKIEAEMKKIV 134

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--------ALCG 695
            +NLP+    + RE+AIA         +  +  +V  +E    G   S         LC 
Sbjct: 135 KENLPIERFTLPREEAIA------FMKEKEEPYKVELIEDLPEGAEISFYRQGEFVDLCA 188

Query: 696 GTHVSSTGEIMLLY 709
           G H+ ST ++   Y
Sbjct: 189 GPHLMSTKDVGKAY 202


>gi|59800743|ref|YP_207455.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|73919809|sp|Q5F9U4|SYT_NEIG1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|59717638|gb|AAW89043.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040681|gb|ACT57477.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 10/183 (5%)

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  + + I   +    KKA  + ++  + +      E S+ +      R    I HS  
Sbjct: 22  TGSDVAESISRSLA---KKAVAVAINGKVCDLSDPVREGSIEIITPEDPRSLAVIRHSCA 78

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++  A+ +I    V      I  DG  +D    +P +S EL  IE  + +IIA++ P +
Sbjct: 79  HIMAEAVQSIW-PEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFL 137

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIM 706
            + ++ E A     +     K      + + E    Y  G      LC G HV STG++ 
Sbjct: 138 KQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFD--LCRGPHVRSTGQVK 195

Query: 707 LLY 709
             +
Sbjct: 196 KFF 198


>gi|260441039|ref|ZP_05794855.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|268600819|ref|ZP_06134986.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268584950|gb|EEZ49626.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGIYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|241204765|ref|YP_002975861.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858655|gb|ACS56322.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 661

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  I        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQEIWPGTQVTIGPVIE-NGFYYDFAKNEPFTLDDLPKIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N     ++ +RE   A    A  G +Y   +     E +D  ++       LC G H++
Sbjct: 132 RNAAFTKQVWSREK--AKQVFADKGEQYKVELVDAIPEGQDLKIYYQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG+I
Sbjct: 190 STGQI 194


>gi|167618495|ref|ZP_02387126.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis Bt4]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 30/224 (13%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVH-----HAIVERG 563
            D+T FY   GGQ GDTG     G         +KA+         VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDTGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAPLASG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   ++V  ID+  R +    H+A+HLL   L   +      +G  +T + +R D   
Sbjct: 90  V-KPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTAEYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRVV 679
            +PI   + + +E  + +++    PV T  I + E A        +  K      RVR++
Sbjct: 143 VEPI---DREQVETRLAELVGGAHPVTTEWITDDEMAARPELVRTMSVKPPMGLGRVRLL 199

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 200 RIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|160914445|ref|ZP_02076660.1| hypothetical protein EUBDOL_00449 [Eubacterium dolichum DSM 3991]
 gi|158433603|gb|EDP11892.1| hypothetical protein EUBDOL_00449 [Eubacterium dolichum DSM 3991]
          Length = 385

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 149/372 (40%), Gaps = 47/372 (12%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FY E GG   D G  I D +   + D+  K E  ++ H + E+     E ++ ++++ 
Sbjct: 35  TIFYKEGGGMASDIG-MINDHL---VQDL--KLEDGYMWHLLDEK----LEGTVTMSVNL 84

Query: 578 QNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             R +    H+A HL+   +  +     L  HV         + + FD+       + EL
Sbjct: 85  HERFRKCQIHTAQHLISALMQNVYKVKTLAHHVGDE-----ENDVEFDLKDFNEKMAFEL 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSS 691
           + +    N +I  +L V  +     +A       + G   N D +RVV +     G    
Sbjct: 140 QVL---CNGLIRDDLAVTIQYPTPSEA----KKHVSGKDVNRDDLRVVRI-----GTLDY 187

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCG  HV S   + +LYI        G  +I  I G +       + + L  ++  L V
Sbjct: 188 NLCGCMHVPSLRYLQMLYISGFEKTTKGY-KIRYIVGDQLLDCTSKRYKVLDEVSQTLAV 246

Query: 752 SQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSK 807
                V  V  +  E R+L    L+  ++  ++  ++L    I D  + + H   ++D++
Sbjct: 247 PHLYAVTGVHRVINENRQLNRNVLVWKQKYYEMLAKEL----IKDHSDVVVHCFDDIDAR 302

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L  +   + K     ++    I      +V IVV       F+A ++    A+     G
Sbjct: 303 SLSMMAQYVVKNYHKNVVFAAKIYD----NVHIVVASGDTASFDAKEVFAQFAEQYHLKG 358

Query: 868 GGGRPHMAQSGG 879
           GG R  MAQ GG
Sbjct: 359 GGNRA-MAQGGG 369


>gi|29377326|ref|NP_816480.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255971805|ref|ZP_05422391.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256854147|ref|ZP_05559512.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|73919789|sp|Q830D0|SYT_ENTFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29344793|gb|AAO82550.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255962823|gb|EET95299.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256711090|gb|EEU26133.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|323481721|gb|ADX81160.1| threonyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 645

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|309378779|emb|CBX22605.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE S V  I  ++R  + I  HS  HL+ HA+  +  +     G  I  +G  +D+   K
Sbjct: 52  TEDSTVQIITPKDREGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEK 110

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P T  ++ +IE  + ++IAQ+  V+  +  R +A+        G +Y  R+     E E 
Sbjct: 111 PFTPEDVAAIEARMKELIAQDYDVIKIMTPRAEAVKIFQDR--GEEYKLRLIDDMPEVEA 168

Query: 686 GGVHSSA----LCGGTHVSST 702
            G++       +C G HV +T
Sbjct: 169 MGMYHHQEYVDMCRGPHVPNT 189


>gi|114776996|ref|ZP_01452016.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114552517|gb|EAU54977.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 634

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 9/124 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +HL+  A+  +        G  I  DG  +D  + +  T  +L  IE+ +  +  
Sbjct: 70  IRHSTSHLMAMAVQEVFPGAQVTIGPVIE-DGFYYDFAYERAFTPDDLTKIEEKMRQLSN 128

Query: 645 QNLPVVTRIMNREDAIA--SGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           Q LP+     +R+ AIA   G   +   K   R+     VS+ Y+ G    S LC G HV
Sbjct: 129 QKLPITREEWDRDAAIAHFEGIGEIYKAKLIGRIPAGETVSL-YKQG--EWSDLCRGPHV 185

Query: 700 SSTG 703
            +TG
Sbjct: 186 PNTG 189


>gi|298709340|emb|CBJ31276.1| ATP binding / tRNA ligase/ threonine-tRNA ligase [Ectocarpus
           siliculosus]
          Length = 470

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 8/128 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVND 641
           L I H++ H++  A+  +        G  I  +G  +D  + +  +T ++LK I+  ++ 
Sbjct: 106 LKIRHTSAHVMAMAVQRLFPGTQVTIGPWID-NGFYYDFYNEETTMTDSDLKKIKKEMDK 164

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGT 697
           II Q LP+V   + RE+A +   A  LG  +     D ++   +     G     LC G 
Sbjct: 165 IIRQKLPLVREEVTREEARSRIEA--LGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGP 222

Query: 698 HVSSTGEI 705
           HV +TG++
Sbjct: 223 HVETTGDL 230


>gi|239827997|ref|YP_002950621.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259516491|sp|C5D639|SYT_GEOSW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239808290|gb|ACS25355.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 644

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 21/132 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+   L  +V      +  +G  +D+   + +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKR-LYKNVKLGVGPVIENGFYYDIDMEESLTPEDLPKIEQEMRKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-----------VSVEYEDGGVHSSAL 693
           +NL +V + ++RE+AI       L  +  D +++           +S+ YE G      L
Sbjct: 133 ENLEIVRKEVSREEAIR------LYEEIGDDLKLELINDIPEGETISI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEI 705
           C G HV STG+I
Sbjct: 184 CRGVHVPSTGKI 195


>gi|227550587|ref|ZP_03980636.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257888612|ref|ZP_05668265.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257897010|ref|ZP_05676663.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257898951|ref|ZP_05678604.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293378702|ref|ZP_06624860.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293571021|ref|ZP_06682064.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227180295|gb|EEI61267.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257824666|gb|EEV51598.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257833575|gb|EEV59996.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257836863|gb|EEV61937.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608947|gb|EFF38226.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292642630|gb|EFF60782.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 647

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   L + HSA HL+  A+  +  +     G  I   G  +D  + +  +T+ 
Sbjct: 59  IVTPDHEDALGL-VRHSAAHLMAQAMRRLYPNIHFGVGPAID-SGFYYDTDNGQNQVTAE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGV 688
           +L +IE  +  I+ +NLP+  R++++++A+   A+     +    +    V   Y+ G  
Sbjct: 117 DLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASDPYKVELISELPEEEVITAYQQGEF 176

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
               LC G HV STG I +  ++S
Sbjct: 177 ID--LCRGPHVPSTGRIQVFKLLS 198


>gi|293399557|ref|ZP_06643710.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291610126|gb|EFF39248.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 648

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|220934623|ref|YP_002513522.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|259516780|sp|B8GRI1|SYT_THISH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219995933|gb|ACL72535.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 643

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 13/149 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           ++  + SL +  D        I HS  HLL  A+  +  S     G  I  +G  +D   
Sbjct: 50  LIEDDASLAIITDRDPEGLEVIRHSTAHLLAQAVKDLFPSAQVTIGPVID-NGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV------- 676
            +P    +L+ IE  + ++   +LPV   +M+R++A+        G +Y  ++       
Sbjct: 109 ERPFHPDDLEKIEARMKELAKADLPVSRSVMDRDEAVDFFRDQ--GEEYKAQIIADIPAG 166

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             +S+ Y+ G      LC G HV STG++
Sbjct: 167 ETISL-YKQGEFID--LCRGPHVPSTGKL 192


>gi|311105446|ref|YP_003978299.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760135|gb|ADP15584.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 650

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++  V     +R+DA+       +G KY   + + S+        Y +G      LC G 
Sbjct: 135 KDEVVTREEWSRDDAVEFFKG--IGEKYKAEI-IASIPSNEPLSLYREGDFID--LCRGP 189

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 190 HVPSTGKLKVFKLM 203


>gi|256963904|ref|ZP_05568075.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256954400|gb|EEU71032.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
          Length = 645

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALEVFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  +   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITI---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|322368472|ref|ZP_08043041.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552488|gb|EFW94133.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 77/188 (40%), Gaps = 17/188 (9%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D    IG G  L    V    +G  V  A      L  +  LV+  D  +   
Sbjct: 17  EEGATVEDVAYEIGPG--LGKDTVAGVVDGELVDKATP----LSEDCRLVIVTDQSDEYL 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA H+   AL   L           T +G  +D+   + + S +L  IED  +DI
Sbjct: 71  SVLRHSAAHVFAQALKR-LHPEAKLTIGPWTDEGFYYDIAGIE-LDSDDLAEIEDEGHDI 128

Query: 643 IAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           I ++L +     +RE+A            +L T+  D   +    YE G    S LC G 
Sbjct: 129 IEEDLDIERVEKSREEAFDMYEDNEYKQDILDTEAADEDSISF--YEQGEF--SDLCKGP 184

Query: 698 HVSSTGEI 705
           HVSSTGEI
Sbjct: 185 HVSSTGEI 192


>gi|40062682|gb|AAR37595.1| threonyl-tRNA synthetase [uncultured marine bacterium 314]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  DG  +D +  +  T  +LK IE+ + +I+ 
Sbjct: 71  IRHDAAHVLAMAVQELFPGTQVTIGPVIK-DGFYYDFSRKETFTDEDLKKIENKMKEIVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++ P    +  R +AI       +G  Y   +         +S+ Y  G  H   LC G 
Sbjct: 130 RDEPTKREVWKRNEAINHFKK--IGEHYKAEIIEDIPKNEELSI-YHHGKWHD--LCKGP 184

Query: 698 HVSSTGEI 705
           H+ STG+I
Sbjct: 185 HLPSTGKI 192


>gi|254294721|ref|YP_003060744.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254043252|gb|ACT60047.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 654

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  DG  +D    +  ++ + + IE  +N +I 
Sbjct: 71  IRHDAAHILAQAVQKLFPGTQVTIGPVID-DGFYYDFARKEAFSTDDFEKIEKEMNRVID 129

Query: 645 QNLPVVTRIMNREDAIA-------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            + P+V  + NR++AI           A L+     D    V   Y  G      LC G 
Sbjct: 130 ADYPIVREVWNRDEAIKMFKDIGEDYKAELISDLPVDETITV---YRQGDWFD--LCKGP 184

Query: 698 HVSSTGEI 705
           H+ STG++
Sbjct: 185 HLPSTGKL 192


>gi|329118120|ref|ZP_08246832.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465780|gb|EGF12053.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE S V  I  +++  + I  HS  HL+ HA+  +        G  I  DG  +D+   K
Sbjct: 58  TEDSTVQIITPKDKEGVEIIRHSCAHLVGHAVKQLYPDAKMVIGPVIE-DGFYYDIATEK 116

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P T  ++ +IE  + ++I Q+  VV  +  R + I +      G +Y  R+     E E 
Sbjct: 117 PFTPEDVAAIEARMKELINQDYDVVKVMTPRAETIKTFQDR--GEEYKLRLIEDMPEVEA 174

Query: 686 GGVHSSA----LCGGTHVSST 702
            G++       +C G HV +T
Sbjct: 175 MGLYHHQEYVDMCRGPHVPNT 195


>gi|291524284|emb|CBK89871.1| Alanyl-tRNA synthetase [Eubacterium rectale DSM 17629]
          Length = 424

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 161/407 (39%), Gaps = 73/407 (17%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG---------CAIGDGIRLQITDV------------- 546
           ++ +++ +QT F+ E GGQ  D G           I +G+     D+             
Sbjct: 34  KQFDIILNQTLFFPEEGGQSPDMGILGGYRVVDVQIKNGVITHTVDISADDCCIMGKEEA 93

Query: 547 --QKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL----LHHALS- 598
             +KK +G I       E+  L   + +   ID+Q+R      HS  H+    +H     
Sbjct: 94  QTEKKTDGQITGMECASEKVELAAGVHVHGKIDWQHRFYNMQQHSGEHIFSGIVHRRFGF 153

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G H+S   S +T D        S  I+  ++  +E  VN  I++N+P+     +R++
Sbjct: 154 ENVGFHLSD--SVVTMD-------FSGVISPEDIAEVEHEVNVAISKNIPIEVTYPSRDE 204

Query: 659 AIASGAAALLGTKYNDR------VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                   L   +Y  +      VR+V+V   D        C   HV  TGEI +L +++
Sbjct: 205 --------LAQLEYRSKIEIEGQVRIVTVPGYD-----VCACCAPHVKRTGEIGMLKVMN 251

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--WEEYRKL 770
             + + G+ RI  + G RA      + + +  L      +Q  +V  V ++    +  K 
Sbjct: 252 YQNYKGGV-RISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKS 310

Query: 771 QLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +L  AK   L   V +L     AD +        +D+   ++ ++ L +K  SG      
Sbjct: 311 ELGTAKSALLDYKVAELP----ADTDNAVLFEDGIDTNTARNCVNGLVEKY-SGFSAFFT 365

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            + E   S +I       +   A    +L A+      GGG+P M Q
Sbjct: 366 GNDEAGYSFIIGSKNADCNTVAAALRNKLGAR------GGGKPVMVQ 406


>gi|239998484|ref|ZP_04718408.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240125235|ref|ZP_04738121.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|317163762|gb|ADV07303.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 648

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|325860506|ref|ZP_08173616.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325481987|gb|EGC85010.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  +  +G  +DV  +  + I+  +   IE+ + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAVE-NGFFYDVMPAAGQTISENDFPRIEEKMRELAR 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N PVV   +++ DAI    A   G +Y  +V  +  + EDG +      H + LC G H
Sbjct: 132 KNEPVVRHDVSKADAIKEFTAD--GQEY--KVEHIEQDLEDGTISTYTQGHFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LVSTGAIKAIKITS 201


>gi|327536012|gb|AEA94846.1| threonine--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 660

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  +   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITI---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|315148859|gb|EFT92875.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4244]
          Length = 660

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           I+E G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IIEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  V   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITV---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|240013609|ref|ZP_04720522.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240112403|ref|ZP_04726893.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240120679|ref|ZP_04733641.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
          Length = 648

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|254181219|ref|ZP_04887816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|184211757|gb|EDU08800.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVH-----HAIVERG 563
            D+T FY   GGQ GD+G     G         +KA+         VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAALAAG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   +LV  ID+  R +    H+A+HLL   L   +      +G  +T D +R D   
Sbjct: 90  V-KPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVR 677
            +PI   + + ++  + +++    PV T  +  ++ +A     L+ T          RVR
Sbjct: 143 VEPI---DREHVQARLAELVDGAHPVTTEWITDDEMVAR--PELVRTMSVKPPMGLGRVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++ +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 198 LLRIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|323137534|ref|ZP_08072611.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322397160|gb|EFX99684.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 643

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   ++P T  +L +IE  + +I+A
Sbjct: 71  IRHDAAHVLAEAVQELYPGTQVTIGPVIE-NGFYYDFHRAEPFTLEDLPAIEKKMREIVA 129

Query: 645 QNLPVVTRIMNREDA----IASG---AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           ++ P+V    +R+ A    IA G      L+ +  +D    V   Y+ G  H   LC G 
Sbjct: 130 RDAPIVREEWDRDHARTWFIAKGETFKGELIDSIKSDEPLSV---YKQG--HWLDLCRGP 184

Query: 698 HVSSTGEI 705
           H+ S G+I
Sbjct: 185 HLPSVGKI 192


>gi|304387978|ref|ZP_07370150.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304337977|gb|EFM04115.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 643

 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 77  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 136 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 193

Query: 701 ST 702
           +T
Sbjct: 194 NT 195


>gi|302870142|ref|YP_003838779.1| threonyl/alanyl tRNA synthetase SAD [Micromonospora aurantiaca ATCC
           27029]
 gi|302573001|gb|ADL49203.1| Threonyl/alanyl tRNA synthetase SAD [Micromonospora aurantiaca ATCC
           27029]
          Length = 245

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 20/218 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D++ FY   GGQ  D G  +  G++ +I   +K  +   +         + TE++  
Sbjct: 35  IVLDRSAFYPGGGGQPPDHGVLLWQGVQTRIVGTRKGDDLWLIPAEGDPVPPVGTEVA-- 92

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ++   R  L   HS  H+L   +    G+ V+  G  + P   R D   + P    + 
Sbjct: 93  GAVEDTRRTMLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDF--NLPEVPPDF 148

Query: 633 KS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYED 685
           K+ IE+ VN  +A +  V  R++ R +A+A     ++ T+ N        VR+V +   D
Sbjct: 149 KARIEELVNAEVAADRSVAVRVLPRAEALA--LPDIIRTQSNLIPPEEQEVRIVDIVGLD 206

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             V +    GGTHV+ST +I  + +V   S     RR+
Sbjct: 207 --VQAD---GGTHVASTAQIGKVQVVKVESKGRANRRV 239


>gi|167737817|ref|ZP_02410591.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 14]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVHHAIVERGILRTE 568
            D+T FY   GGQ GD+G     G         +KA+         VH     +  L   
Sbjct: 30  LDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAALAAS 89

Query: 569 M----SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +    +LV  ID+  R +    H+A+HLL   L   +      +G  +T D +R D    
Sbjct: 90  VKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYVRIDFATV 143

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVRV 678
           +PI   + + ++  + +++    PV T  +  ++ +A     L+ T          RVR+
Sbjct: 144 EPI---DREHVQARLGELVDGAHPVTTEWITDDEMVAR--PELVRTMSVKPPMGLGRVRL 198

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 199 LRIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|126651397|ref|ZP_01723604.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591926|gb|EAZ86009.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 643

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 15/193 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R       KKA    ++  +V+      E + +  I   +   L 
Sbjct: 20  GTSTDDVALSISPGLR-------KKAYAGKINGVLVDLKTPIEEDAAIAIITQDDAEALE 72

Query: 585 I-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           I  HS  HL   A+  +        G  I   G  +D+    PIT+ +L +IE  +  II
Sbjct: 73  ILRHSTAHLTAQAIKRLFPDVKLGIGPVID-GGFYYDIDSPTPITAEDLPAIEKEMKKII 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHV 699
           A+NL V  + ++R  A A      +G +Y   +       E   ++       LC G HV
Sbjct: 132 AENLEVERKNVSR--AEAQAMYEKIGDEYKLELLEAIPADEQVSIYYQGEFFDLCRGIHV 189

Query: 700 SSTGEIMLLYIVS 712
            STG++    ++S
Sbjct: 190 PSTGKLREFKLLS 202


>gi|138896280|ref|YP_001126733.1| threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267793|gb|ABO67988.1| Threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 649

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 21/139 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+   L  +V      +  +G  +D+     +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKR-LYDNVKLGVGPVIENGFYYDIDMEHKLTPDDLPKIEAEMRKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-----------VSVEYEDGGVHSSAL 693
           +NL VV + ++R++AI       L  K  D +++           +S+ YE G      L
Sbjct: 133 ENLDVVRKEVSRDEAIR------LYEKIGDHLKLELINDIPEGETISI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I    ++S
Sbjct: 184 CRGVHVPSTGKIKEFKLLS 202


>gi|323704478|ref|ZP_08116056.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535940|gb|EGB25713.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 634

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 12/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ +++   H+++H++  A+  +  +     G  I  +G  +D    +P T  +
Sbjct: 58  ILTFDDEDGKKIYW-HTSSHIMAQAIKRLYKNVKLTIGPAID-NGFYYDFDVDEPFTVDD 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--- 688
              IED +N II ++L +   ++ RE+AI        G  Y  +V ++    +D  +   
Sbjct: 116 FSKIEDEMNKIIKEDLKLERFVLPREEAIKFMEEK--GEPY--KVELIKDLPQDATISFY 171

Query: 689 ---HSSALCGGTHVSSTGEIMLLYIVS 712
                + LC G H+ STG +  + ++S
Sbjct: 172 RQGEFTDLCAGPHLPSTGMVKSIKLLS 198


>gi|148909063|gb|ABR17634.1| unknown [Picea sitchensis]
          Length = 682

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  ++  L I H++ H+L  A+  +        G  I   G  +D    +P+T  
Sbjct: 100 IVLPTNETSKTLLCIRHTSAHVLAMAVQKVFPDAKVTIGPWIE-RGFYYDFD-IQPLTDK 157

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGV 688
           +LK I+  ++ II +NLP++   ++RE+A     A     K    D ++   +     G 
Sbjct: 158 DLKKIKKEMDRIIRRNLPLIREEVSREEAERRIRAINEPYKLEILDSIKSEPITIYHIGD 217

Query: 689 HSSALCGGTHVSSTG 703
               LC G HV STG
Sbjct: 218 EWWDLCAGPHVESTG 232


>gi|121634517|ref|YP_974762.1| threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|120866223|emb|CAM09963.1| putative threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325131827|gb|EGC54527.1| threonyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 648

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|126452703|ref|YP_001065542.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167844963|ref|ZP_02470471.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei B7210]
 gi|242315528|ref|ZP_04814544.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|126226345|gb|ABN89885.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106a]
 gi|242138767|gb|EES25169.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVHHAIVERGILRTE 568
            D+T FY   GGQ GD+G     G         +KA+         VH     +  L   
Sbjct: 30  LDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAALAAS 89

Query: 569 M----SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +    +LV  ID+  R +    H+A+HLL   L   +      +G  +T D +R D    
Sbjct: 90  VKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLPYPV------DGCSVTADYVRIDFATV 143

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVRV 678
           +PI   + + ++  + +++    PV T  +  ++ +A     L+ T          RVR+
Sbjct: 144 EPI---DREHVQARLGELVDGAHPVTTEWITDDEMVAR--PELVRTMSVKPPMGLGRVRL 198

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 199 LRIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|221633051|ref|YP_002522276.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156502|gb|ACM05629.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 596

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 565 LRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L  EM L +  + ++   L+ + HS  H++  A+  +        G  I  DG  +D   
Sbjct: 4   LTKEMDLAVAPESEHELDLARMRHSCAHVMAQAVLELFPGAKLGIGPAIA-DGFYYDFDL 62

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKYNDRVRV 678
            +P+T  +L+ IE  + +I A   P V R++ RE+A            L+     D   V
Sbjct: 63  PRPLTPEDLEHIERRMEEIKAAAYPFVRRVVTREEARELFRDQPYKLELIAEFPPD--EV 120

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI--VSESSIRAGIRR 722
           ++    DG    + LC G HV  T +I    +  VS +  R   RR
Sbjct: 121 ITTYTHDG---FTDLCRGPHVRDTSQIGFFKLLRVSGAYWRGDERR 163


>gi|254493203|ref|ZP_05106374.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268598466|ref|ZP_06132633.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|226512243|gb|EEH61588.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268582597|gb|EEZ47273.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|90417791|ref|ZP_01225703.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337463|gb|EAS51114.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 659

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D     P T  +L  IE  + +II 
Sbjct: 75  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFFYDFARDTPFTPDDLPVIEKKMVEIIR 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +R+ A A  A    G  Y   +     E +D  ++S      LC G H++
Sbjct: 134 RNAPFTKEVWSRDKAKAVFAEK--GEAYKVELVDAIPEGQDLKIYSQGDWFDLCRGPHMA 191

Query: 701 STGEI 705
           +TG+I
Sbjct: 192 ATGQI 196


>gi|268683833|ref|ZP_06150695.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|268624117|gb|EEZ56517.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|268594343|ref|ZP_06128510.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547732|gb|EEZ43150.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 638

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 131 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 188

Query: 701 ST 702
           +T
Sbjct: 189 NT 190


>gi|240016048|ref|ZP_04722588.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 648

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|83590594|ref|YP_430603.1| threonyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|83573508|gb|ABC20060.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Moorella
           thermoacetica ATCC 39073]
          Length = 633

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 11/137 (8%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L+  H+A H+L  A+  +        G  IT DG  +D       T  +L ++E  +  
Sbjct: 67  RLAYRHTAAHVLAQAVKHLFPGTELGIGPAIT-DGFYYDFDSEHKFTPEDLTALEAEMQR 125

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVE-YEDGGVHSSALCG 695
           II  +LP+  R ++RE+A+       LG  Y     ND    V +  Y  G      LC 
Sbjct: 126 IIKADLPLERREVSREEALE--LFRRLGEPYKVELINDLPEGVPISTYRQGDFID--LCA 181

Query: 696 GTHVSSTGEIMLLYIVS 712
           G H+ STG +  + + S
Sbjct: 182 GPHLPSTGYLKAVKLTS 198


>gi|288802831|ref|ZP_06408268.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288334648|gb|EFC73086.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 649

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  +  +G  +DV     + I+  +   IE+ + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAVE-NGFFYDVMPAEGQTISENDFPKIEEKMRELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTH 698
           +N PVV R +++ DA+    A   G +Y  +V  +  + EDG + + +      LC G H
Sbjct: 132 KNEPVVRRNVSKADAVKEFTAD--GQEY--KVEHIVEDLEDGTISTYSQGNFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LVSTGAIKAVKITS 201


>gi|325136057|gb|EGC58667.1| threonyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 643

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 77  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 136 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 193

Query: 701 ST 702
           +T
Sbjct: 194 NT 195


>gi|240117427|ref|ZP_04731489.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 648

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|261392911|emb|CAX50492.1| threonyl-tRNA synthetase (threonine--tRNA ligase; ThrRS) [Neisseria
           meningitidis 8013]
 gi|325203807|gb|ADY99260.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|16081463|ref|NP_393810.1| threonyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|22654139|sp|Q9HL99|SYT_THEAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10639503|emb|CAC11475.1| threonine--tRNA ligase related protein [Thermoplasma acidophilum]
          Length = 660

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL +A++ +    +   G  +  +G  +D    KPI   +L  IED +  I  
Sbjct: 59  LRHSAAHLLANAVTNLYPDALPNTGPVVE-NGFYYDFD-MKPIGEEDLAKIEDEMRRIQK 116

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+   +  + D +   A      +   D V   S  Y  G      LC G HV STG
Sbjct: 117 ENVPIERIVYQKADLLRIFAKNPYKIRIIEDNVSDASSVYRQGNF--VDLCLGPHVPSTG 174

Query: 704 EI 705
            I
Sbjct: 175 YI 176


>gi|316983701|gb|EFV62682.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 648

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|15837338|ref|NP_298026.1| threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|22654146|sp|Q9PFE2|SYT_XYLFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9105624|gb|AAF83546.1|AE003915_11 threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVIA-DGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAI 660
           Q+  VV  I  R D +
Sbjct: 131 QDYHVVKHITARHDVV 146


>gi|328953980|ref|YP_004371314.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454304|gb|AEB10133.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 640

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 8/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+ ++        G  I  +G  +D    +P T+ +L  IE  + +++ 
Sbjct: 73  LRHSAAHIMAEAVRSLFPGVKITIGPAIE-NGFYYDFDPPRPFTTEDLGRIEARMWNLVE 131

Query: 645 QNLPVVTRIMNREDAI----ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           Q+LP + R ++ ++A+    A G    +    + + + VS+ Y+ GG     LC G H+ 
Sbjct: 132 QDLPFIRREVSWQEALDYFQAQGETYKVELLQDLKDQQVSL-YQQGGF--VDLCRGPHIP 188

Query: 701 STGEIMLLYIVS 712
           S+G +    + S
Sbjct: 189 SSGYLSAFKLTS 200


>gi|163855649|ref|YP_001629947.1| alanyl-tRNA synthetase domain-containing protein [Bordetella petrii
           DSM 12804]
 gi|163259377|emb|CAP41677.1| alanyl-tRNA synthetase domain protein [Bordetella petrii]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 41/203 (20%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V  + TPF+ + GGQ  D G  IG+    Q+    + + G  +H+       +R  ++L 
Sbjct: 31  VRLNATPFHPQGGGQPADVGW-IGNVEVFQV----EASNGEILHY-------IRQAVALG 78

Query: 573 LT---IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +T   +D + R++ S  HSA HL+ HAL  +    V  +     P   R           
Sbjct: 79  VTTAKVDAERRQRHSRLHSAGHLIGHALEPLAWRPVKAHH---WPGESRVVFKPDDGAQV 135

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            ++ +++   +D+IA NLP                 AL+      +VR         G  
Sbjct: 136 VDVAAVQSRCDDLIASNLP---------------CRALVDENQFRQVRF--------GHL 172

Query: 690 SSALCGGTHVSSTGEIMLLYIVS 712
           S   CGGTHV +T ++  L I+S
Sbjct: 173 SPYACGGTHVGATADLSGLQILS 195


>gi|296476301|gb|DAA18416.1| alanyl-tRNA synthetase domain-containing protein 1 isoform 1 [Bos
           taurus]
          Length = 444

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 19/262 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G  I D   L++T    +A+          +
Sbjct: 35  KEVLSG--FQVVLEDTLLFPEGGGQPDDRG-TINDISVLRVTRRGTQADHF-------TQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          +  D  
Sbjct: 85  TPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADDLFGLKTTSWELGRLRSVIELD-- 142

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV 681
            S  +T+ ++ +IE +VN+ I   LPV  R ++ +D  +       L   +   +RVV++
Sbjct: 143 -SPTVTAEQVAAIERSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTI 201

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           +  D     S +C GTHVS+  ++ ++ I+     +     +  + G R    +      
Sbjct: 202 QSVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGI 256

Query: 742 LKSLASFLKVSQGNVVGRVEEI 763
            K+L + LK    + V  V+++
Sbjct: 257 EKALTALLKCGAEDHVEAVKKL 278


>gi|325137877|gb|EGC60452.1| threonyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|126438986|ref|YP_001058304.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 668]
 gi|126218479|gb|ABN81985.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 668]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE------GIFVH-----HAIVERG 563
            D+T FY   GGQ GD+G     G         +KA+         VH      A +  G
Sbjct: 30  LDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQAALAAG 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + +   +LV  ID+  R +    H+A+HLL   L   +      +G  +T D +R D   
Sbjct: 90  V-KPGDALVAEIDWAPRHRRMRLHTASHLLCAMLPYPV------DGCSVTADYVRIDFAT 142

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND------RVR 677
            +PI   + + ++  + +++    PV T  +  ++ +A     L+ T          RVR
Sbjct: 143 VEPI---DREHVQARLAELVDGAHPVTTEWITDDEMVAR--PELVRTMSVKPPMGLGRVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++ +E    GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 198 LLRIE----GVDLQP-CGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|319410089|emb|CBY90425.1| threonyl-tRNA synthetase (threonine-tRNA ligase; ThrRS) [Neisseria
           meningitidis WUE 2594]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|239814876|ref|YP_002943786.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259516786|sp|C5CUU2|SYT_VARPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239801453|gb|ACS18520.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+++ +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSTAHLVGHAVKQLYPTAKMVIGPVIE-EGFYYDISYERPFTPEDMAAIEARMRELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRAEVIEVFKSR--GEDYKLRLVEDMPDEQAMGLYYHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|319794591|ref|YP_004156231.1| threonyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597054|gb|ADU38120.1| threonyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 635

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+++ +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSTAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDISYERPFTPEDMAAIEARMRELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRAEVIEVFKSR--GEDYKLRLVEDMPDEQAMGLYYHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|218767842|ref|YP_002342354.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|22654142|sp|Q9JVA3|SYT_NEIMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121051850|emb|CAM08156.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|325197939|gb|ADY93395.1| threonyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|313668802|ref|YP_004049086.1| threonyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313006264|emb|CBN87726.1| putative threonyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE S V  I  ++R  + I  HS  HL+ HA+  +  +     G  I  +G  +D+   K
Sbjct: 52  TEDSSVQIITPKDREGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEK 110

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P T  ++ +IE  + ++IAQ+  V+  +  R +A+        G +Y  R+     E E 
Sbjct: 111 PFTPEDVAAIEARMKELIAQDYDVIKIMTPRAEAVKIFQDR--GEEYKLRLIDDMPEVEA 168

Query: 686 GGVHSSA----LCGGTHVSST 702
            G++       +C G HV +T
Sbjct: 169 MGMYHHQEYVDMCRGPHVPNT 189


>gi|308388909|gb|ADO31229.1| putative threonyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325202484|gb|ADY97938.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325207764|gb|ADZ03216.1| threonyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|169828188|ref|YP_001698346.1| threonyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992676|gb|ACA40216.1| Threonyl-tRNA synthetase 2 [Lysinibacillus sphaericus C3-41]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 11/198 (5%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V+  Q P   +     G T   I   IR    +++KKA    V+  IV+      E + 
Sbjct: 4   QVIHIQFPDGQQQAFTKGVTLTEIAQAIR---PELRKKAVAGSVNGTIVDLTRPIMEDAQ 60

Query: 572 VLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   D  ++  +  I HS  HLL  A+   L  H       +  +G  +D+  +  +T +
Sbjct: 61  ITLYDASSKEGIEVIRHSTAHLLAQAVKR-LYPHARFGVGPVIENGFYYDIDIADTLTPS 119

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGG 687
           +L+ IE  +  I+ +N+ +  R ++R +A    A   L  +  + +     V++ YE G 
Sbjct: 120 DLQQIEKTMKQIVRENVQIKRREVSRNEAKKLFAHDALKLELLESIPADETVTI-YEQGE 178

Query: 688 VHSSALCGGTHVSSTGEI 705
            +   LC G+HV STG++
Sbjct: 179 FYD--LCRGSHVPSTGKL 194


>gi|319744717|gb|EFV97060.1| threonine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 647

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D  + S  I++ +L  IE+ +  I+
Sbjct: 71  LRHSAAHLFAQAAKRLFPDLCLGVGPAIQ-DGFYYDTDNKSGQISNDDLSRIEEEMKKIV 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSA----LCGGTH 698
            +N P +   +++E+A+       L      +V ++S   EDG  V+       LC G H
Sbjct: 130 KENHPCIREEISKEEALE------LFKDDPYKVELISEHAEDGLTVYRQGEFVDLCRGPH 183

Query: 699 VSSTGEIMLLYIVS 712
           V STG I + ++++
Sbjct: 184 VPSTGRIQVFHLLN 197


>gi|268603124|ref|ZP_06137291.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268587255|gb|EEZ51931.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 637

 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|15676618|ref|NP_273762.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|22654143|sp|Q9K095|SYT_NEIMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7225946|gb|AAF41133.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325140125|gb|EGC62654.1| threonyl-tRNA synthetase [Neisseria meningitidis CU385]
 gi|325200596|gb|ADY96051.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|288927618|ref|ZP_06421465.1| alpha-amylase family protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330452|gb|EFC69036.1| alpha-amylase family protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 681

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+ +    H+A HLL+  +  +     S N   +     +   T  +  +  + K IE 
Sbjct: 536 HNKDEFPPAHTAEHLLNQVMIRMFDCGRSTNAH-VERKKSKISYTLDRKPSRQDEKEIER 594

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N++I ++LPV   +++R D       + +   Y+  VR+V +     G   +  C G 
Sbjct: 595 RMNELIEEDLPVTYELVDRYDLPEGIDLSRVPDDYSSMVRIVRI-----GDFDACPCIGK 649

Query: 698 HVSSTGEI 705
           HV STG+I
Sbjct: 650 HVRSTGQI 657


>gi|254674303|emb|CBA10087.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMSEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|163760291|ref|ZP_02167374.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162282690|gb|EDQ32978.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 668

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQELFPGTQVTIGPVIE-NGFYYDFAKNEPFTPEDLPVIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +R++  A    A  G  Y   +       ED  ++       +C G H++
Sbjct: 132 RNKPFTKEVWSRDE--ARRVFAEKGEAYKVELIESINSDEDLKIYRQGDWFDMCRGPHMA 189

Query: 701 STGEI 705
           STG+I
Sbjct: 190 STGQI 194


>gi|119720099|ref|YP_920594.1| threonyl/alanyl tRNA synthetase, SAD [Thermofilum pendens Hrk 5]
 gi|119525219|gb|ABL78591.1| Predicted alanyl-tRNA synthetase-like metal-dependent hydrolase
           [Thermofilum pendens Hrk 5]
          Length = 252

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 89/208 (42%), Gaps = 19/208 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAI 559
           E + G K  V  D+T F+   GGQ  D G  +       ++  I D      G   H   
Sbjct: 36  ELLKGSKAYVELDRTIFHPLGGGQPSDEGSIVSPRGAFAVKKAIRD-----RGRIRHWGR 90

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +E G L    ++   ++++ R  +   H+A H+L +A+  + G  V    +   P     
Sbjct: 91  IEAGSLEVGDTVRCELNWEKRYLVMRLHTAGHILDYAMLRLYGRLVETLDAFHGPPEAYL 150

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDRVR 677
             + S+P  +  L   E+  N ++ + L V  + + R +  A    A  +     ++  R
Sbjct: 151 VYSVSEPPDAYRL---EEEANKVVERGLSVAVKFVPRGELQAHIYNAPNVSRLPPSEEYR 207

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           VV +     GV++   C GTHVS+T E+
Sbjct: 208 VVEIP----GVNAMP-CTGTHVSNTREV 230


>gi|158422571|ref|YP_001523863.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|158329460|dbj|BAF86945.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 636

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 22/170 (12%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVS 606
           KKA  + +  A+ +     T+ + +  +   + R L  I H A H+L  A+  +      
Sbjct: 11  KKAVAVTLDGALTDLSEPITKDARIEIVTRDDPRALELIRHDAAHVLAEAVQELFPGTQV 70

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T+ +L  IE  + +IIA++ P    + +R++A       
Sbjct: 71  TIGPVIE-NGFYYDFARNEPFTTDDLPKIEAKMKEIIARDKPFTKEVWSRDEA------- 122

Query: 667 LLGTKYNDRVRVVSVEY-------EDGGVHSSA----LCGGTHVSSTGEI 705
                + D+     VE        +D  ++       LC G H+ STG+I
Sbjct: 123 --KRVFRDKGEAFKVELVDAIPEDQDVKIYKQGEWFDLCRGPHMPSTGKI 170


>gi|22536875|ref|NP_687726.1| threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76787804|ref|YP_329459.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76799413|ref|ZP_00781564.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77405954|ref|ZP_00783034.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77413516|ref|ZP_00789706.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|73919828|sp|Q8E0L9|SYT_STRA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771973|sp|Q3K1Z4|SYT_STRA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22533725|gb|AAM99598.1|AE014224_1 threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76562861|gb|ABA45445.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585236|gb|EAO61843.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77160460|gb|EAO71581.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77175465|gb|EAO78254.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 647

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D  + S  I++ +L  IE+ +  I+
Sbjct: 71  LRHSAAHLFAQAAKRLFPDLCLGVGPAIQ-DGFYYDTDNKSGQISNDDLPRIEEEMKKIV 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSA----LCGGTH 698
            +N P +   +++E+A+       L      +V ++S   EDG  V+       LC G H
Sbjct: 130 KENHPCIREEISKEEALE------LFKDDPYKVELISEHAEDGLTVYRQGEFVDLCRGPH 183

Query: 699 VSSTGEIMLLYIVS 712
           V STG I + ++++
Sbjct: 184 VPSTGRIQVFHLLN 197


>gi|229592029|ref|YP_002874148.1| putative alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229363895|emb|CAY51388.1| putative alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 242

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 26/203 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKA--EGIFVHHAIVERGILRTEM 569
           +  + T FY   GGQ GDTG   + DG R+++T   +      I  H        L   +
Sbjct: 33  IALEHTLFYPTGGGQPGDTGHLTLADGTRVEVTGTVRDPVQRSIIWHQVEHWPEQLTAGV 92

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +D++ R Q    H   H   H L +I+ + V+  G  I+ D  R D     P  +
Sbjct: 93  QVDAGLDWERRYQ----HMKMHTCLHLLCSIIDAPVT--GCSISADKGRLDF--DLPEMT 144

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +  SI  ++N +I Q   V T  M      AS  + LL      R + V+     G V 
Sbjct: 145 LDKDSITRDLNALIEQAHAVKTLSMP-----ASEYSTLLQIT---RTQAVAPPVIQGSVR 196

Query: 690 SSAL-------CGGTHVSSTGEI 705
              +       CGGTHV +T EI
Sbjct: 197 VIEIAGIDIQPCGGTHVLNTEEI 219


>gi|298530062|ref|ZP_07017464.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509436|gb|EFI33340.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 646

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+ TI  S     G  I   G  +D  + +P T  +L+ IE  +   IA
Sbjct: 72  LRHSAAHIMAEAVKTIFPSARVTIGPDIE-HGFYYDFDYERPFTPEDLEKIEAEMARSIA 130

Query: 645 QNLPVVTRIMNREDA----IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           Q+ P    +M+RE+A    +       L          VS+ Y  G      LC G HV 
Sbjct: 131 QDQPFERVVMSREEAKKVFLDMNETYKLEILDELEEDEVSL-YRHGDFID--LCRGPHVP 187

Query: 701 STGEIMLLYIVS 712
           STG +    + S
Sbjct: 188 STGYVKSFKLTS 199


>gi|327314606|ref|YP_004330043.1| threonine--tRNA ligase [Prevotella denticola F0289]
 gi|326946255|gb|AEA22140.1| threonine--tRNA ligase [Prevotella denticola F0289]
          Length = 649

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  +  +G  +DV  +  + I+  +   IE+ + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAVE-NGFFYDVMPAAGQTISENDFPRIEEKMRELAR 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N PV+   +++ DAI    A   G +Y  +V  +  + EDG +      H + LC G H
Sbjct: 132 KNEPVIRHDVSKADAIKEFTAD--GQEY--KVEHIEQDLEDGTISTYTQGHFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LVSTGAIKAIKITS 201


>gi|293604689|ref|ZP_06687089.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292816858|gb|EFF75939.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLVAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++  V     +R+DA+       +G KY   + + S+        Y +G      LC G 
Sbjct: 135 KDEVVTREEWSRDDAVEFFKG--IGEKYKAEI-IASIPSNEPLSLYREGDFID--LCRGP 189

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 190 HVPSTGKLKVFKLM 203


>gi|224371110|ref|YP_002605274.1| AlaS2 [Desulfobacterium autotrophicum HRM2]
 gi|223693827|gb|ACN17110.1| AlaS2 [Desulfobacterium autotrophicum HRM2]
          Length = 145

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 19/143 (13%)

Query: 587 HSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           HSA H+L+  +  +        +H+ +  S       + D   ++ +T  EL  IE  VN
Sbjct: 10  HSAEHILNGTMDQLFNCGRCFSAHIERKKS-------KCDYHFTRALTPEELIQIESQVN 62

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +I  N+ V    +   +A      + L    +D +R+VS+     G + +  C GTHVS
Sbjct: 63  RVIRANMKVTDTCIPMAEADKRFNLSRLPDGRSDEIRIVSI-----GDYDACPCIGTHVS 117

Query: 701 STGEIMLLYIVSESSIRAGIRRI 723
            T E+    I + S  + G+ RI
Sbjct: 118 ETSELGTFRITT-SDFKDGVLRI 139


>gi|222095974|ref|YP_002530031.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221240032|gb|ACM12742.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           Q1]
          Length = 639

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 20/142 (14%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  I G+ V+     +  +G  +D+     +   +
Sbjct: 63  IITIDSNEGVEIA-RHSAAHILAQAIKRIYGN-VNLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  + +II +NL +    ++RE+      AA L  + NDR+++  +E         
Sbjct: 121 LRKIEIEMKNIIKENLKIERVEVSREE------AAKLFQEMNDRLKLELLEAIPSEESVT 174

Query: 683 -YEDGGVHSSALCGGTHVSSTG 703
            Y+ G      LC G H+ STG
Sbjct: 175 LYKQGEF--VDLCRGPHLPSTG 194


>gi|115524346|ref|YP_781257.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115518293|gb|ABJ06277.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris BisA53]
          Length = 679

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 17/130 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+ T+        G  I  +G  +D   ++P T  +  +IE  + +IIA
Sbjct: 96  IRHDAAHVLAEAVQTLWPGTQVTIGPTIE-NGFYYDFFRNEPFTPEDFAAIEKKMREIIA 154

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKY------NDRVRVVSV-EYEDGGVHSSALCG 695
           ++ P    + +RE    +      L   +       ND +++ +  E+ D       LC 
Sbjct: 155 RDKPFTKDVWDREKTKQVFRDKGELFKVELVDAIPGNDPIKIYNQGEWFD-------LCR 207

Query: 696 GTHVSSTGEI 705
           G H++STG+I
Sbjct: 208 GPHMTSTGKI 217


>gi|154245583|ref|YP_001416541.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|154159668|gb|ABS66884.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 660

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQ 578
           YAE     G +G  I   I   +    KKA  + +  A+ +    I R     ++T D  
Sbjct: 14  YAE-----GTSGADIAAAISKSLA---KKAVAVTLDGALTDLSEPITRDAKLEIVTRDDP 65

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
              +L I H  +H++  A+  +        G  I  +G  +D   + P T+ +L  IE+ 
Sbjct: 66  RALEL-IRHDCSHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFARNAPFTTEDLPVIENK 123

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------ 692
           + +IIA++ P    +  R++A    AA   G K    V +V     D  V          
Sbjct: 124 MREIIARDRPFTKEVWTRDEAKRVFAAKGEGYK----VELVDAIPSDQDVKIYKQGEWFD 179

Query: 693 LCGGTHVSSTGEI 705
           LC G H+ STG+I
Sbjct: 180 LCRGPHMPSTGKI 192


>gi|294779531|ref|ZP_06744926.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861074|ref|ZP_07107161.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268336|ref|ZP_07549717.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307276154|ref|ZP_07557285.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|294453410|gb|EFG21817.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300850113|gb|EFK77863.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507148|gb|EFM76287.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306515362|gb|EFM83896.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315036305|gb|EFT48237.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0027]
          Length = 660

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  +D  + + P+T+ 
Sbjct: 75  IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFYYDTDNGESPVTAE 132

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYED 685
           +L +IE  +  I+ +N P+V + ++R +A+   A       L+     D +  V   Y+ 
Sbjct: 133 DLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITV---YDQ 189

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G HV STG I +  ++S
Sbjct: 190 GDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|161869662|ref|YP_001598829.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|189083614|sp|A9M375|SYT_NEIM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161595215|gb|ABX72875.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|171185920|ref|YP_001794839.1| threonyl/alanyl tRNA synthetase SAD [Thermoproteus neutrophilus
           V24Sta]
 gi|170935132|gb|ACB40393.1| Threonyl/alanyl tRNA synthetase SAD [Thermoproteus neutrophilus
           V24Sta]
          Length = 238

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 89/224 (39%), Gaps = 29/224 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV DQT F+   GG   DTG     G     T V K  E   V H +      +   ++
Sbjct: 27  EVVLDQTAFHDGTGGVQADTGVLYYGGESYAATAVHKGGE---VVHVLDRSPSFKPGEAV 83

Query: 572 VLTIDYQNRRQLSINHSATHLL-------HHALSTILGSHVSQNGSCITPDGLR--FDVT 622
              +D+  R +    H+A H+L       H+AL T         G  ITP+  R  F+V 
Sbjct: 84  RGVVDWDKRYRKMRLHTAAHILSAVLYRRHNALIT---------GGDITPEYARDDFNVE 134

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVV 679
                     +      N+I  + + V    + RE+A+       L  K      R+R+V
Sbjct: 135 GDMATVKRIFEEAVAEANEIARRGIEVKVYWLPREEALKIPGVVKLAEKMPPEVPRLRIV 194

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     GV   A  GG HV +T EI  + I+   +   G +RI
Sbjct: 195 EIP----GVDIQA-DGGPHVRNTSEIGTIKILKVENRGRGKKRI 233


>gi|325127774|gb|EGC50682.1| threonyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMSEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|329768866|ref|ZP_08260294.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328837229|gb|EGF86866.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 647

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + L++  D        + HS+ HLL  AL  + G  V          G  +D      +T
Sbjct: 56  LKLIVADDEDQDSLYVLRHSSAHLLAQALRRLYGKDVHFGVGPAIDGGFYYDFDSEYKVT 115

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEY 683
             + K+IE  +  I+++N+ +  R ++R +A+   A       L+     D V  V   Y
Sbjct: 116 EEDFKNIEKEMKKIVSENIAIEGREVSRSEALEIFADDPYKVELINDLPEDEVITV---Y 172

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             G    + LC G HV+ST +I    ++S
Sbjct: 173 TQGDF--TDLCRGGHVASTSKIKEFKLLS 199


>gi|85375301|ref|YP_459363.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123293655|sp|Q2N6X5|SYT_ERYLH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84788384|gb|ABC64566.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 672

 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 37/204 (18%)

Query: 523 EAGGQLGDTGCAIGDG---------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           EAG    D   AIG G         +  ++ D+ +  EG               E++L+ 
Sbjct: 18  EAGATPADVAAAIGPGLAKAALAAKVDGEVRDLNRPFEG-------------DAELALIT 64

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSK---PITS 629
           + D +   +L+  H   H+L  A+  +  G+ ++   +  T DG  +DV       P   
Sbjct: 65  SRDEEEALELA-RHDYAHVLAEAVQALWPGTQITFGPA--TDDGFYYDVKAPDSRDPFGM 121

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA--ALLGTKY-----NDRVRVVSVE 682
            +L +IE+ + +II  + P+V  + +RE  I    A   +   ++      D    V   
Sbjct: 122 DDLPAIEEKMREIIKADKPLVREVWSREQLIEKWEAEGEVFKAEWAKELPEDEELTVYWS 181

Query: 683 YEDGGVHSS-ALCGGTHVSSTGEI 705
            E GG  S   +C G H++STG++
Sbjct: 182 GEPGGEDSWLDMCRGPHLASTGKL 205


>gi|167950022|ref|ZP_02537096.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 70

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K +++  VT+DL  R  A DL +L A+ +GG GGG RP MAQ+GG + +   QA+A V  
Sbjct: 4   KVALVSGVTKDLTGRMKAGDLVKLVAEKIGGRGGG-RPDMAQAGGNDPSALPQALALVPG 62

Query: 895 FLK 897
           +++
Sbjct: 63  WVE 65


>gi|55980115|ref|YP_143412.1| alanyl-tRNA synthetase-like protein [Thermus thermophilus HB8]
 gi|55771528|dbj|BAD69969.1| alanyl-tRNA synthetase-related protein [Thermus thermophilus HB8]
          Length = 375

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 20/213 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV--QKKAEGIFVH--HAIVERGILRTE 568
            V  QT FY E+GGQ  D G   G    +Q+     ++KA G  VH   A +  G+    
Sbjct: 29  AVLSQTLFYPESGGQPADRGVLRGPFGEVQVLHAYEEEKAFGDVVHVLSAPIPEGV---- 84

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   ID+  R +    H+A HLL  AL    G H       ++ D     V   +   
Sbjct: 85  -EVEGEIDWPRRFRHMQRHTAQHLLSQALLRAGGYHT----VAVSLDSPVCTVDLEEEAE 139

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            A +   E   N  +  + PV    ++ E+   +        K   +VR+V +     G 
Sbjct: 140 EAGVLEAEALANFAVYADYPVEAFYVSEEE--LARYPLRRPPKVRGKVRLVRI-----GD 192

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              A CGGTH+ ++ +   + ++     + G R
Sbjct: 193 FDLAACGGTHLKTSAQAGPIKVLKWERYKGGTR 225


>gi|115929936|ref|XP_001192813.1| PREDICTED: similar to Mgc2744-prov protein [Strongylocentrotus
           purpuratus]
 gi|115943037|ref|XP_787006.2| PREDICTED: similar to Mgc2744-prov protein [Strongylocentrotus
           purpuratus]
          Length = 411

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 149/351 (42%), Gaps = 46/351 (13%)

Query: 477 CQKPP--IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           CQ+     +LT  V S  +A V+  E+     + +  E++ + T  + E GGQ  D G  
Sbjct: 5   CQRHSYETELTTKVVSCTQAQVKL-EVNGRKQNVKGFELILEDTVLFPEGGGQPDDRG-T 62

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I +   L+IT  +K A+ I    + +E G   T+      +D++ R      HS  HL+ 
Sbjct: 63  INNVEVLRIT--RKGADAIHFVTSSLEPGSEVTQ-----KVDWKRRFDHMQQHSGQHLV- 114

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
              +     H  +  S        F    +  I+  +L+ +E + ND I + +P+  R+ 
Sbjct: 115 --TAIADNKHGWKTTSWDLGREKSFIELDTPKISQEQLEELEKDTNDAIRKCIPMTPRL- 171

Query: 655 NREDAIASGAAAL-------LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                +  G+  L       L   +   VR+V +E    G+ ++ LC GTHVS+   +  
Sbjct: 172 -----VELGSKELQEVRTRGLPDDHVGLVRIVEIE----GIEAN-LCCGTHVSNLSHLQA 221

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE- 766
           + ++     + G   +  + G R  S+L       K+L   LK      V +V++I +  
Sbjct: 222 IKLLGAEKGKKGKTNLYFLAGNRVLSYLGKCYNNEKALNLSLKCGPDEHVQQVDKIQKSL 281

Query: 767 ----------YRKLQLIHAKR-KLQLNVED-LSCH-KIADVNFMSHIISEV 804
                      R+L ++ A+  KL  N +  LS H K  D  +M  + +EV
Sbjct: 282 KTANKTSLTVLRELAVLEARHYKLNPNRDPLLSIHRKEGDSEYMIIVANEV 332


>gi|266620391|ref|ZP_06113326.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288868018|gb|EFD00317.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 633

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 76/162 (46%), Gaps = 21/162 (12%)

Query: 562 RGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           R ++ ++ +L +LT D +  R  + +H+ +H+L  A+  +        G  IT DG  +D
Sbjct: 47  RTVVASDCALTILTFDDEGGRA-AFHHTTSHILAQAVKRLFPETKLAIGPSIT-DGFYYD 104

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
               +P +  +L+++E  +  I+ ++L +    + R++AIA      L  + ++  +V  
Sbjct: 105 FDRPEPFSPEDLEALETEMKKIVKEDLKLEYFTLPRKEAIA------LMQEKDEPYKVEL 158

Query: 681 VE----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +E          Y  G    + LC G H+ +TG +    + S
Sbjct: 159 IEDLPEEEIISFYRQG--EYTDLCAGPHLMTTGPVKAFKLTS 198


>gi|326386620|ref|ZP_08208242.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208935|gb|EGD59730.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHS-KP 626
           ++LV   D  +  +L + H   H+L  A+  +  G+ ++   +  T DG  +D   + +P
Sbjct: 60  LALVTARDEADALEL-VRHDFAHVLAEAVQALFPGTQITFGPA--TDDGFYYDFAPAERP 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T  +L  IE  + +IIA + P+      R D IA   AA  G  +  +      E E+ 
Sbjct: 117 FTEEDLPVIEAKMREIIAADKPLRREAWTRADLIARWEAA--GETFKAQWAAELPEGEEL 174

Query: 687 GVHSSA-----LCGGTHVSSTGEI 705
            V+ S      +C G H++STG++
Sbjct: 175 TVYWSGSDWFDMCRGPHLASTGKL 198


>gi|256763421|ref|ZP_05504001.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958077|ref|ZP_05562248.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257079964|ref|ZP_05574325.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256684672|gb|EEU24367.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256948573|gb|EEU65205.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256987994|gb|EEU75296.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
          Length = 645

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  +D  + + P+T+ 
Sbjct: 60  IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFYYDTDNGESPVTAE 117

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYED 685
           +L +IE  +  I+ +N P+V + ++R +A+   A       L+     D +  V   Y+ 
Sbjct: 118 DLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITV---YDQ 174

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G HV STG I +  ++S
Sbjct: 175 GDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|148256517|ref|YP_001241102.1| threonyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|146408690|gb|ABQ37196.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Bradyrhizobium
           sp. BTAi1]
          Length = 688

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 28/216 (12%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           ++ A   +K+ + F   P  A+     G TG  I  GI   +    K+   + ++  + +
Sbjct: 25  LKPAAPVEKITIAF---PDGAKREYPRGTTGLDIAKGISPSLA---KRTVAMALNGDLAD 78

Query: 562 RGILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                TE + +  +D  + R L  I H   H+L  A+ ++        G  I  +G  +D
Sbjct: 79  LNDPITEDAKLELVDRDDPRALELIRHDCAHVLAEAVQSLWPGTQVTIGPVIE-NGFYYD 137

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
              ++P T  +  +IE  + +II ++ P    + +RE              + D+     
Sbjct: 138 FFRNEPFTPEDFAAIEKKMREIIGRDKPFTKEVWDREKT---------KQVFRDKGEAFK 188

Query: 681 VEYEDG-------GVHSSA----LCGGTHVSSTGEI 705
           VE  D         ++S      LC G H++STG+I
Sbjct: 189 VELVDAIPGDEPIKIYSQGDWFDLCRGPHMTSTGKI 224


>gi|330897296|gb|EGH28715.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 170

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 9/170 (5%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCH- 789
           L   +++LK  A+ +K ++ N++ ++  + E  R    +L+ + AK       +DLS   
Sbjct: 2   LNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQLEQLQAKAASAAG-DDLSSAA 60

Query: 790 -KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +  V  ++  +   D K L +++D L+ K+   +I+L G   E K  ++  VT+DL  
Sbjct: 61  LDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL-GSVHEDKVVLVAGVTKDLTG 119

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  A DL +  A    GG GGGRP MAQ GG +    D A+A    F+++
Sbjct: 120 QLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDSALALAVPFVEQ 168


>gi|108755195|emb|CAK32587.1| hypothetical protein 17H9-13 [uncultured organism]
          Length = 190

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQ-KKAEGIFVHHAIVERGILRTEMS 570
           +  D+T FY + GGQ GDTG     G R + I D    +A G  VH A  +   L    +
Sbjct: 27  IELDRTVFYPKGGGQPGDTGSLRAGGGRVVPIVDTYVDRATGRHVHVAGPDAPGLAAGDT 86

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +V  ID+Q R +L   H+  HLL   +   + G  V +         L FD+    P T+
Sbjct: 87  VVAEIDWQRRHRLMRMHTCLHLLCAVVHGPVTGGSVGE-----AKGRLDFDL----PETT 137

Query: 630 AELKSIEDNVNDIIAQNLPV 649
            +   I   +N +I +N PV
Sbjct: 138 LDKDHITAELNRLIEENHPV 157


>gi|317495533|ref|ZP_07953901.1| threonyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914347|gb|EFV35825.1| threonyl-tRNA synthetase [Gemella moribillum M424]
          Length = 647

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 10/149 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + L++  D        + HS+ HLL  AL  + G  V          G  +D      I+
Sbjct: 56  LKLIVADDEDQDSLYVLRHSSAHLLAQALRRLYGKDVHFGVGPAIDGGFYYDFDSEYKIS 115

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVSVEY 683
             + K+IE  +  II++N+ +  R ++R +A+   AA      L+     D V  V   Y
Sbjct: 116 EEDFKNIEKEMKKIISENVAIEGREVSRTEALEIFAADPYKVELINDLPEDEVITV---Y 172

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             G      LC G HV+ST +I    ++S
Sbjct: 173 TQGDF--VDLCRGGHVASTSKIKEFKLLS 199


>gi|297250596|ref|ZP_06864620.2| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838509|gb|EFH22447.1| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 648

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVIKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 ST 702
           +T
Sbjct: 199 NT 200


>gi|77408338|ref|ZP_00785079.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77173019|gb|EAO76147.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 647

 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D  + S  I++ +L  IE+ +  I+
Sbjct: 71  LRHSAAHLFAQAAKRLFPDLCLGVGPAIH-DGFYYDTDNKSGQISNDDLPRIEEEMKKIV 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSA----LCGGTH 698
            +N P +   +++E+A+       L      +V ++S   EDG  V+       LC G H
Sbjct: 130 KENHPCIREEISKEEALE------LFKDDPYKVELISEHAEDGLTVYRQGEFVDLCRGPH 183

Query: 699 VSSTGEIMLLYIVS 712
           V STG I + ++++
Sbjct: 184 VPSTGRIQVFHLLN 197


>gi|319407312|emb|CBI80953.1| Threonyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 654

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L +IE  + +II 
Sbjct: 74  IRHDCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARKQPFTLDDLTTIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +N P    I +RE A  I S    L   +  D +   + + V Y+        LC G H+
Sbjct: 133 RNQPFRKEIWSREKAKKIFSEKNELYKVELIDSIPDDQDLKVYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
            STG+I
Sbjct: 190 QSTGQI 195


>gi|170581994|ref|XP_001895931.1| hypothetical protein Bm1_22375 [Brugia malayi]
 gi|158596974|gb|EDP35222.1| hypothetical protein Bm1_22375 [Brugia malayi]
          Length = 75

 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 30/41 (73%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGM 43
          +   IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM
Sbjct: 26 SAQQIRLSFLEYFKEHNHTYVPSSSVIPEDDSSVTFVNAGM 66


>gi|254440251|ref|ZP_05053745.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Octadecabacter antarcticus 307]
 gi|198255697|gb|EDY80011.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Octadecabacter antarcticus 307]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 21/201 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ D + FYA +GGQ GD+G     G  + I     K EG  +     E   L    ++V
Sbjct: 28  IILDASIFYATSGGQPGDSGTLTWQGGAIDIA-TSVKGEGGTIILVPAEPNPLPAIGTIV 86

Query: 573 -LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +++++ R +    H+A HL    LS ++   V+  G  I P+  R D     P    +
Sbjct: 87  KQSLNWERRHRHMRVHTALHL----LSVVIPLPVT--GGSIGPEKGRLDF--DMPDAIED 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYEDGG 687
             ++E+ +N +I  +  + T  ++  +  A+       ++   K   R+R+V +    G 
Sbjct: 139 KAALENTLNKLIDCDFDISTEWISESELAANPELVKTMSVAPPKGAGRIRMVRI----GA 194

Query: 688 VHSSA---LCGGTHVSSTGEI 705
             ++A    CGGTHV  T EI
Sbjct: 195 GENTADYQPCGGTHVRHTSEI 215


>gi|269123175|ref|YP_003305752.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314501|gb|ACZ00875.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 10/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS+ H++  A+ ++  +     G  I  +G  +D    +P T  +L  IE  +  II 
Sbjct: 70  LRHSSAHVMAEAVMSLFPNTKVTIGPAIE-NGFYYDFDTERPFTEEDLVKIEKEMKKIIK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHSSA----LCGGTHV 699
            N      + +RE A A    A  G  Y  +V ++ S+E ++  +++      LC GTHV
Sbjct: 129 LNEKFSREVWSREKARAYFENA--GQNY--KVEILDSLEEDEFTIYTQGKFVDLCRGTHV 184

Query: 700 SSTGEI 705
            STG I
Sbjct: 185 PSTGYI 190


>gi|91762425|ref|ZP_01264390.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718227|gb|EAS84877.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 638

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)

Query: 584 SINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +I H   H+   A+  +  G+ V+     I  +G  +D +  +P T  +L  IE+ + +I
Sbjct: 70  TIRHDTAHITAMAVQELFPGTQVTI--GPIIENGFYYDFSRKEPFTEDDLNKIENKMKEI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +++P    +  R+ AI+       G  Y   +     + ED  ++       LC G H
Sbjct: 128 VDRDVPTTREVWKRDKAISHFKDK--GEIYKAEIIESIPQGEDVSIYFHGDWHDLCRGPH 185

Query: 699 VSSTGEI 705
           +SSTG+I
Sbjct: 186 LSSTGKI 192


>gi|260592148|ref|ZP_05857606.1| alpha-amylase family protein [Prevotella veroralis F0319]
 gi|260535782|gb|EEX18399.1| alpha-amylase family protein [Prevotella veroralis F0319]
          Length = 720

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 6/138 (4%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E  +   ++  N+ +    H+A HLL+  +  + G+  S N            +   KP 
Sbjct: 564 EKPMDYVLNTHNKEEFPPAHTAEHLLNQVMVRMFGAERSNNAHIERKKSKMTFILDHKP- 622

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
              E K+I D +N +IA++LPV   +++R       +   L    ++ +R+V +     G
Sbjct: 623 NRKEEKAIVDEMNRLIAEDLPVTFEMVDRNHIPEGVSLDKLPDDASEMLRLVRI-----G 677

Query: 688 VHSSALCGGTHVSSTGEI 705
                 C G HV ST +I
Sbjct: 678 DFDVCPCIGKHVRSTSQI 695


>gi|33592589|ref|NP_880233.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33596580|ref|NP_884223.1| threonyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33601133|ref|NP_888693.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81425212|sp|Q7VY64|SYT_BORPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81427196|sp|Q7W912|SYT_BORPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81431262|sp|Q7WKF7|SYT_BORBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33572235|emb|CAE41786.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33573281|emb|CAE37262.1| threonyl-tRNA synthetase [Bordetella parapertussis]
 gi|33575568|emb|CAE32646.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+ ++        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKSLFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLQAIEKKMAELAR 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++  V     +R++A+A      +G  Y   + + S+        Y +G      LC G 
Sbjct: 135 KDEVVTREEWSRDEAVAYFKG--IGEVYKAEI-IASIPSNETLSLYREGDFID--LCRGP 189

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 190 HVPSTGKLKVFKLM 203


>gi|121601812|ref|YP_988945.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|166223323|sp|A1USJ2|SYT_BARBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120613989|gb|ABM44590.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 658

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D     QL I HS  H+L  A+  +        G  I  +G  +D    +P T  +
Sbjct: 62  IITRDDPRALQL-IRHSCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARQQPFTLED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           L +IE  + +II +N      I +RE A  I S    L   +  D +     E +D  ++
Sbjct: 120 LNTIEKKMREIIQRNKFFKKEIWSREKAKKIFSDKGELYKVELIDAI----PEDQDLKIY 175

Query: 690 SSA----LCGGTHVSSTGEI 705
                  LC G HV STG+I
Sbjct: 176 YQGDWFDLCRGPHVPSTGQI 195


>gi|71083144|ref|YP_265863.1| threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123734387|sp|Q4FNH9|SYT_PELUB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71062257|gb|AAZ21260.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 638

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)

Query: 584 SINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +I H   H+   A+  +  G+ V+     I  +G  +D +  +P T  +L  IE+ + +I
Sbjct: 70  TIRHDTAHITAMAVQELFPGTQVTI--GPIIENGFYYDFSRKEPFTEDDLNKIENKMKEI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + +++P    +  R+ AI+       G  Y   +     + ED  ++       LC G H
Sbjct: 128 VDRDVPTTREVWKRDKAISHFKDK--GEIYKAEIIESIPQGEDVSIYFHGDWHDLCRGPH 185

Query: 699 VSSTGEI 705
           +SSTG+I
Sbjct: 186 LSSTGKI 192


>gi|319404307|emb|CBI77900.1| Threonyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 654

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L +IE  + +II 
Sbjct: 74  IRHDCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARKQPFTLDDLTTIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +N P    I +RE A  I S    L   +  D +   + + V Y+        LC G H+
Sbjct: 133 RNKPFRKEIWSREKAKKIFSEKNELYKVELIDAIPDDQDLKVYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
            STG+I
Sbjct: 190 QSTGQI 195


>gi|319637847|ref|ZP_07992613.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317401002|gb|EFV81657.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 637

 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPDAKMVIGPVIE-DGFYYDIATEKPFTPDDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R + I        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKVMTPRAETIKIFQDR--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|258592606|emb|CBE68915.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) [NC10
           bacterium 'Dutch sediment']
          Length = 680

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL+  A+  +L S     G  I  DG  +D+   +P+T  +L +IE  + ++  
Sbjct: 78  LRHSAAHLMAAAVQKLLPSSKFAIGPAIQ-DGFYYDIEPPRPLTQDDLPAIEAAMRELSE 136

Query: 645 QNLPVVTRIMNREDAIASGAA 665
           Q LP V   +  ++AIA  AA
Sbjct: 137 QRLPFVRCEVPLDEAIAKVAA 157


>gi|15459130|gb|AAL00276.1| Threonyl-tRNA synthetase 1 [Streptococcus pneumoniae R6]
          Length = 660

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSATHL   A   +        G  I  DG 
Sbjct: 63  AITEDGSIE-----IVTPDHEDALPI-LRHSATHLFAQAARRLFPDIHLGVGPAIE-DGF 115

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  H+   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 116 YYDTDHTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 167

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 168 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 211


>gi|25010739|ref|NP_735134.1| threonyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77410759|ref|ZP_00787117.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|73919827|sp|Q8E693|SYT_STRA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23095093|emb|CAD46328.1| theronyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77163138|gb|EAO74091.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 647

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D  + S  I++ +L  +E+ +  I+
Sbjct: 71  LRHSAAHLFAQAAKRLFPDLCLGVGPAIQ-DGFYYDTDNKSGQISNDDLPRVEEEMKKIV 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSA----LCGGTH 698
            +N P +   +++E+A+       L      +V ++S   EDG  V+       LC G H
Sbjct: 130 KENHPCIREEISKEEALE------LFKDDPYKVELISEHAEDGLTVYRQGEFVDLCRGPH 183

Query: 699 VSSTGEIMLLYIVS 712
           V STG I + ++++
Sbjct: 184 VPSTGRIQVFHLLN 197


>gi|116515338|ref|YP_816901.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|161410743|ref|NP_359065.2| threonyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|73621971|sp|Q8DNX8|SYT_STRR6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122278253|sp|Q04JD7|SYT_STRP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116075914|gb|ABJ53634.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 647

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSATHL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSATHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  H+   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDHTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|77919019|ref|YP_356834.1| threonyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123770467|sp|Q3A4P3|SYT_PELCD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77545102|gb|ABA88664.1| Ser-tRNA(Thr) hydrolase [Pelobacter carbinolicus DSM 2380]
          Length = 638

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 20/192 (10%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD    IG G+  Q    +     + +   I E G L      ++T++     ++   H+
Sbjct: 23  GDIAAGIGSGLARQAVAARFNDRMVDLCTPITESGRLE-----IITLNSPQGLEV-YRHT 76

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNL 647
           A HL+ HA+  + G  V         +G  +D        +  + + IE  + +++  NL
Sbjct: 77  AAHLMAHAVKDLYGDRVQVTIGPAVENGFYYDFYCEDHAFSPDDFEKIEKRMQELVKANL 136

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTHVS 700
           P+    ++R+ AIA      L  +  +  +V  +E  D    S         LC G H+ 
Sbjct: 137 PIEREEVSRDSAIA------LFRELGEHYKVELIEDLDAPTVSLYRQGDFVDLCRGPHLP 190

Query: 701 STGEIMLLYIVS 712
           STG I    + S
Sbjct: 191 STGRIKAFKLTS 202


>gi|46115228|ref|XP_383632.1| hypothetical protein FG03456.1 [Gibberella zeae PH-1]
          Length = 269

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 92/229 (40%), Gaps = 41/229 (17%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKA--EGIFVHHAIVERGILRTEM 569
           VV ++T F+ + GGQ  D G    +   R  +   +  A  +G  +H    E     TE 
Sbjct: 51  VVTEETIFHPQGGGQPSDIGTMTNESDTRFTVASARMDAVRDGQVLHFGKFESDKKFTEG 110

Query: 570 SLVLT-IDYQNRRQLSINHSATHLLHHALSTIL-----------GSHVSQNGSCITPDGL 617
             V T ID + R   S  H+A H+L  A++ +L            SH   + SC    GL
Sbjct: 111 DTVTTEIDVEKRLLYSRYHTAGHVLGSAVNHLLKDKVEGFEELKASHFPDSASC-EFQGL 169

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--------G 669
                    I       I+  V++ IA  +PV     + ED   +G   L         G
Sbjct: 170 ---------IEGKWKDPIQAKVDEFIAAKMPVEIEFWDEEDFRKNGLEHLTPDASFVAPG 220

Query: 670 TKYNDRVRVVSVE-YEDGGVH--SSALCGGTHVS----STGEIMLLYIV 711
            K+   VR+V  E Y  GG H  ++  CG T V     S G+  + Y+V
Sbjct: 221 EKFR-VVRIVGAEVYPCGGTHIDTTDQCGETTVKKISRSKGKSKVSYLV 268


>gi|329577160|gb|EGG58630.1| TGS domain protein [Enterococcus faecalis TX1467]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 13/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  +D  + + P+T+ 
Sbjct: 75  IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFYYDTDNGESPVTAE 132

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYED 685
           +L +IE  +  I+ +N P+V + ++R +A+   A       L+     D +  V   Y+ 
Sbjct: 133 DLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITV---YDQ 189

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G HV STG I +  ++S
Sbjct: 190 GDFVD--LCRGVHVPSTGRIQVFKLLS 214


>gi|282878574|ref|ZP_06287355.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella buccalis ATCC 35310]
 gi|281299365|gb|EFA91753.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella buccalis ATCC 35310]
          Length = 152

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +  + G   S N            V   KP    E K IE  +N++I Q+
Sbjct: 15  HTAEHLLNQLMHRMFGCERSHNAHIERKKSKMTFVLDRKPDKRDE-KEIETRMNELIQQD 73

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +PV   +++R+      +   L    +D +R+  +     G +    C G HV ST +I
Sbjct: 74  MPVTFEVVDRQHLPEGISLDRLPADASDAIRICRI-----GDYDVCPCIGKHVRSTSQI 127


>gi|229163567|ref|ZP_04291517.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228619949|gb|EEK76825.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 646

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 63  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 121

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 122 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 180

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 181 GEFFD--LCRGVHLPSTGKIKVFKLLS 205


>gi|269213639|ref|ZP_05982445.2| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269145722|gb|EEZ72140.1| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 643

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   KP T  ++ +IE  + ++IA
Sbjct: 77  IRHSCAHLVGHAVKQLYPDAKMVIGPVIE-DGFYYDIATEKPFTPDDVAAIEARMKELIA 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+  +  R + I        G +Y  R+     E E  G++       +C G HV 
Sbjct: 136 QDYDVIKVMTPRAETIKIFQDR--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 193

Query: 701 ST 702
           +T
Sbjct: 194 NT 195


>gi|118479724|ref|YP_896875.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|118418949|gb|ABK87368.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 646

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 63  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 121

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 122 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 180

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 181 GEFFD--LCRGVHLPSTGKIKVFKLLS 205


>gi|46200150|ref|YP_005817.1| alanyl-tRNA synthetase related protein [Thermus thermophilus HB27]
 gi|46197778|gb|AAS82190.1| alanyl-tRNA synthetase related protein [Thermus thermophilus HB27]
          Length = 392

 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 20/213 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV--QKKAEGIFVH--HAIVERGILRTE 568
            V  QT FY E+GGQ  D G   G    +Q+     ++KA G  VH   A +  G+    
Sbjct: 46  AVLSQTLFYPESGGQPADRGVLRGPFGEVQVLHAYEEEKAFGDVVHVLSAPIPEGV---- 101

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   ID+  R +    H+A HLL  AL    G H       ++ D     V   +   
Sbjct: 102 -EVEGEIDWPRRFRHMQRHTAQHLLSQALLRAGGYHT----VAVSLDSPVCTVDLEEEAE 156

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            A +   E   N  +  + PV    ++ E+   +        K   +VR+V +     G 
Sbjct: 157 EAGVLEAEALANFAVYADYPVEAFYVSEEE--LARYPLRRPPKVRGKVRLVRI-----GD 209

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              A CGGTH+ ++ +   + ++     + G R
Sbjct: 210 FDLAACGGTHLKTSAQAGPIKVLKWERYKGGTR 242


>gi|320529200|ref|ZP_08030292.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138830|gb|EFW30720.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDN 638
           +L++ H+ +H++  A+  +      Q    I P   +G  +D    + +T A+L+ IE  
Sbjct: 68  RLALRHTCSHIMAQAVKRLYKDCNVQ--LAIGPAIENGFYYDFDMDRQLTDADLRDIEKE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SA 692
           +  I+ +NL +  R + R +AIA       G  Y  +V ++    ED  + +      + 
Sbjct: 126 MKKIVKENLKLERREIPRSEAIAYFREK--GENY--KVELIEDLPEDVTISTYTQGEFTD 181

Query: 693 LCGGTHVSSTGEIMLLYIVS 712
           LC G HV STG++  L + S
Sbjct: 182 LCAGPHVLSTGKVKALRLQS 201


>gi|228987823|ref|ZP_04147932.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158179|ref|ZP_04286246.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625137|gb|EEK81897.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228771871|gb|EEM20328.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 645

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI---ASGAAALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|30264646|ref|NP_847023.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47530117|ref|YP_021466.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187467|ref|YP_030719.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49481700|ref|YP_038622.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52140935|ref|YP_085897.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|65321944|ref|ZP_00394903.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165871455|ref|ZP_02216102.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636725|ref|ZP_02395009.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167642081|ref|ZP_02400304.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689721|ref|ZP_02880895.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170708708|ref|ZP_02899146.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653139|ref|ZP_02935426.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196042361|ref|ZP_03109631.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218905803|ref|YP_002453637.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866553|ref|YP_002751931.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227817360|ref|YP_002817369.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228917215|ref|ZP_04080772.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929623|ref|ZP_04092641.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935883|ref|ZP_04098693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948301|ref|ZP_04110584.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093673|ref|ZP_04224773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229124142|ref|ZP_04253334.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186832|ref|ZP_04313987.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229601552|ref|YP_002868855.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254686931|ref|ZP_05150789.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254720893|ref|ZP_05182684.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254736684|ref|ZP_05194390.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741722|ref|ZP_05199409.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254754681|ref|ZP_05206716.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757513|ref|ZP_05209540.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30259321|gb|AAP28509.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505265|gb|AAT33941.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181394|gb|AAT56770.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49333256|gb|AAT63902.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974404|gb|AAU15954.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|164712752|gb|EDR18282.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167509956|gb|EDR85379.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167527843|gb|EDR90677.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170126388|gb|EDS95277.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666324|gb|EDT17113.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081663|gb|EDT66734.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196026805|gb|EDX65442.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218536622|gb|ACK89020.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787158|gb|ACO27375.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227005330|gb|ACP15073.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228596569|gb|EEK54234.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228659444|gb|EEL15092.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228689760|gb|EEL43567.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228811288|gb|EEM57626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823651|gb|EEM69473.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830010|gb|EEM75629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842416|gb|EEM87507.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229265960|gb|ACQ47597.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 645

 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|301056082|ref|YP_003794293.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378251|gb|ADK07155.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|293382457|ref|ZP_06628392.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|293387159|ref|ZP_06631720.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|312906512|ref|ZP_07765514.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312910456|ref|ZP_07769302.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|291080141|gb|EFE17505.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|291083430|gb|EFE20393.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|310627455|gb|EFQ10738.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289228|gb|EFQ67784.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 660

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 67  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 119

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +  +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 120 YDTDNGESPVTAEDFPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  +   Y+ G      LC G HV STG I +  ++S
Sbjct: 180 EDEIITI---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 214


>gi|260911675|ref|ZP_05918255.1| alpha-amylase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634223|gb|EEX52333.1| alpha-amylase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 716

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+ +    H+A HLL+  +  +     S N   +     +   T  +  +  + K IE 
Sbjct: 571 HNKDEFPPAHTAEHLLNQVMIRMFDCGRSTNAH-VERKKSKISYTLDRKPSRQDEKEIER 629

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N++I ++LPV   +++R D         +   Y++ VR+V +     G   +  C G 
Sbjct: 630 RMNELIEEDLPVTYELVDRYDLPEGIDLDRVPDDYSNVVRIVRI-----GDFDTCSCIGK 684

Query: 698 HVSSTGEI 705
           HV STG+I
Sbjct: 685 HVRSTGQI 692


>gi|222148633|ref|YP_002549590.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|254783504|sp|B9JWF4|SYT_AGRVS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221735619|gb|ACM36582.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 666

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 73  IRHDTAHVLAEAVQEMWPGTQVTIGPVIE-NGFYYDFAKNEPFTPEDLPKIEKKMKEIIQ 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +RE A    AA   G  Y   +     E +D  ++        C G H++
Sbjct: 132 RNQPFRKEVWSREKAREVFAAK--GESYKVELIDAIPEDQDIKIYYQGDWFDPCRGPHMA 189

Query: 701 STGEI 705
           STG+I
Sbjct: 190 STGQI 194


>gi|217962055|ref|YP_002340625.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222098038|ref|YP_002532095.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|229141301|ref|ZP_04269839.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|217064460|gb|ACJ78710.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221242096|gb|ACM14806.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228642082|gb|EEK98375.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|30022651|ref|NP_834282.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|29898209|gb|AAP11483.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 646

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 63  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 121

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 122 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 180

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 181 GEFFD--LCRGVHLPSTGKIKVFKLLS 205


>gi|212704422|ref|ZP_03312550.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
 gi|212672143|gb|EEB32626.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +  S     G  +  +G  +D    KP +S +  +IE  +  I+ 
Sbjct: 75  IRHSTAHVMAAAVKKLYPSAKVTIGPAVE-NGFYYDFDVEKPFSSEDFPAIEAEMQRIVN 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGT 697
           + LP V   M++ DAI         +K  +  +V  +E  +G   S       + LC G 
Sbjct: 134 ERLPFVRTTMSKADAIEK------FSKMGENFKVEIIEGIEGDTVSLYTCGDFTDLCRGP 187

Query: 698 HVSSTG 703
           HV  TG
Sbjct: 188 HVPHTG 193


>gi|325133766|gb|EGC56422.1| threonyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325144077|gb|EGC66385.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325206438|gb|ADZ01891.1| threonyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  ICHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|42783753|ref|NP_981000.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206969938|ref|ZP_03230892.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218234238|ref|YP_002369371.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|228923319|ref|ZP_04086607.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954844|ref|ZP_04116864.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960844|ref|ZP_04122479.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048283|ref|ZP_04193851.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229072077|ref|ZP_04205286.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|229081828|ref|ZP_04214320.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229112040|ref|ZP_04241583.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129859|ref|ZP_04258825.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229147134|ref|ZP_04275493.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229152770|ref|ZP_04280953.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|229180894|ref|ZP_04308229.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|229192776|ref|ZP_04319734.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|229198724|ref|ZP_04325422.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|296505048|ref|YP_003666748.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|42739683|gb|AAS43608.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206735626|gb|EDZ52794.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218162195|gb|ACK62187.1| threonine--tRNA ligase [Bacillus cereus B4264]
 gi|228584746|gb|EEK42866.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228590615|gb|EEK48476.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228602451|gb|EEK59937.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228630590|gb|EEK87236.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228636383|gb|EEK92854.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228653550|gb|EEL09422.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671363|gb|EEL26664.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701416|gb|EEL53910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228711011|gb|EEL62977.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228723008|gb|EEL74385.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228798866|gb|EEM45845.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804833|gb|EEM51432.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836273|gb|EEM81626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326100|gb|ADH09028.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|324328469|gb|ADY23729.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +AI         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|159028099|emb|CAO87176.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 618

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 30/177 (16%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +R  ++    I+  +++ L I H+  H+L  A+ T+        G   T  G  +D    
Sbjct: 5   IRHPLTESPVIEDDSQKLLKIRHTCAHILAMAVQTLFPETKVAIGPW-TETGFYYDFDRQ 63

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVE 682
            P T  +L+ I   +  II +NLP++  ++ R +  A      L   Y   +  R+   E
Sbjct: 64  TPFTPEDLEKIAAEMGRIIGKNLPIIREVLERSEITAE--IERLNQPYKKLILERIPPDE 121

Query: 683 --------------------YEDGGVHSSA-----LCGGTHVSSTGEIMLLYIVSES 714
                                 DG V         LC G H++STGEI     V ES
Sbjct: 122 TITRYFIGSPDAGRSDREPSLIDGAVSPPEEFWWDLCAGPHLNSTGEINPNAFVLES 178


>gi|302387069|ref|YP_003822891.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197697|gb|ADL05268.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 629

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S  H+ +H+L  A+  +        G  I  DG  +D    K I++ +L +IE+ +  I+
Sbjct: 69  SFRHTTSHILAQAIKRLYPGAKLAIGPAIE-DGFYYDFDFEKAISNDDLSAIENEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTH 698
            +N  +    +NR++AIA       G  Y     ND  +   + + + G     LC G H
Sbjct: 128 KENFEIKRFTLNRDEAIAFMKKR--GEDYKVQLINDLPKDEEISFYEQGDFVD-LCAGPH 184

Query: 699 VSSTGEIMLLYIVS 712
           + ST  +    + S
Sbjct: 185 LLSTKYVKAFKLTS 198


>gi|217979642|ref|YP_002363789.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505018|gb|ACK52427.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 22/143 (15%)

Query: 575 IDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           I  +++R L  I H A H+L  A+ T+        G  I  +G  +D   ++P T  +  
Sbjct: 60  IGREDKRALELIRHDAAHVLAEAVQTLYPGTQVTIGPVIE-NGFYYDFFRNEPFTPDDFA 118

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-------EDG 686
           ++E  + +IIA++ P    + +R+ A          + +  R     VE        ED 
Sbjct: 119 AVEKKMAEIIARDRPFTKEVWSRDQA---------RSFFETRGEAFKVELVDSIPGDEDL 169

Query: 687 GVHSSA----LCGGTHVSSTGEI 705
            ++       LC G H++STG+I
Sbjct: 170 KIYRQGDWLDLCRGPHMTSTGKI 192


>gi|225447618|ref|XP_002270988.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 670

 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 18/144 (12%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D    +P+T  
Sbjct: 88  IVLPTNESSERLLRIRHTCAHVMAMAVQKLFPDAKVTIGPWIE-NGFYYDFD-MEPLTDK 145

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-------LLGTKYNDRVRVVSV-- 681
           +LK I+  ++ II +NLP++   ++R++A     A        +L +   D + +  +  
Sbjct: 146 DLKRIKKEMDRIIGRNLPLIREEVSRDEAQRRIMAVNEPYKMEILDSIQEDPITIYHIGG 205

Query: 682 EYEDGGVHSSALCGGTHVSSTGEI 705
           E+ D       LC G HV  TG I
Sbjct: 206 EWWD-------LCAGPHVEYTGNI 222


>gi|296084987|emb|CBI28402.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 14/142 (9%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D    +P+T  
Sbjct: 95  IVLPTNESSERLLRIRHTCAHVMAMAVQKLFPDAKVTIGPWIE-NGFYYDFD-MEPLTDK 152

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-------LLGTKYNDRVRVVSVEY 683
           +LK I+  ++ II +NLP++   ++R++A     A        +L +   D + +    Y
Sbjct: 153 DLKRIKKEMDRIIGRNLPLIREEVSRDEAQRRIMAVNEPYKMEILDSIQEDPITI----Y 208

Query: 684 EDGGVHSSALCGGTHVSSTGEI 705
             GG     LC G HV  TG I
Sbjct: 209 HIGG-EWWDLCAGPHVEYTGNI 229


>gi|126729010|ref|ZP_01744825.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710940|gb|EBA09991.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 660

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I   G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDVKVTIGPVIE-HGWYYDFDRAEPFTPEDLGLIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGT 697
              PV T + +R DAIA        T  N +V +V+   +DG             LC G 
Sbjct: 133 ARDPVRTEVWSRADAIAH----YEKTGENYKVELVNAIPDDGQPIRMYWHGDWQDLCRGP 188

Query: 698 HVSSTGEI 705
           H+ +TG++
Sbjct: 189 HLQNTGQV 196


>gi|319405749|emb|CBI79372.1| Threonyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 654

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L +IE  +++II 
Sbjct: 74  IRHDCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARKQPFTLDDLTTIEKKMHEIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +N P    I++RE A  I S        +  D +   + + + Y+        LC G H+
Sbjct: 133 RNKPFRKEILSREKAKKIFSEKNEFYKIELIDSIPDDQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
            STG+I
Sbjct: 190 QSTGQI 195


>gi|325141961|gb|EGC64399.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Neisseria meningitidis 961-5945]
          Length = 234

 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|319408458|emb|CBI82113.1| Threonyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 659

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE  + +II 
Sbjct: 74  IRHDCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARKQPFTLDDLTIIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +N P    I +RE A  I S    L   +  D +   + V V Y+        LC G H+
Sbjct: 133 RNKPFRKEIWSREKAKKIFSEKNELYKVEIIDAIPEDQDVKVYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
            STG+I
Sbjct: 190 QSTGQI 195


>gi|308153370|gb|ADO14994.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae]
          Length = 101

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           D+K L+  MD L++++   +I+L G S  K A V  V             L+ +++++  
Sbjct: 7   DAKALRDAMDRLKQQLGDSVIVLAGASGGKVALVSGVNGSPTGKVKAGELLSNIASQI-- 64

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG GGGRP +AQ GG +G     A+ GV  ++K+
Sbjct: 65  GGKGGGRPDLAQGGGEDGPALATALDGVPLWVKQ 98


>gi|330926049|ref|XP_003301304.1| hypothetical protein PTT_12769 [Pyrenophora teres f. teres 0-1]
 gi|311324090|gb|EFQ90599.1| hypothetical protein PTT_12769 [Pyrenophora teres f. teres 0-1]
          Length = 305

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 38/230 (16%)

Query: 504 EAVSGQKVE-------VVFDQTPFYAEAGGQLGDTGCAI-------GDGIR---LQITDV 546
           +A +GQ+ E       +   +T F+A+ GGQ  DTG          GD  +     +  V
Sbjct: 62  DAATGQEAESAPEPHVLTVSETIFHAQGGGQPSDTGTMTATTSPESGDEAKETVFTVHQV 121

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----L 601
           +    G  +H  +           L   I+   R   S  H+A H++  A++ +     L
Sbjct: 122 RSLPTGAILHMGLFPSSPFTPPTHLHQAINIPLRTLHSRLHTAGHVIGLAVNLLIRRGDL 181

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-- 659
            + ++ + +   P+     VT +  I S+   +I+  V++I+A +LPV     +++ A  
Sbjct: 182 PTTITDSKASHYPNAAY--VTFTGAIPSSLAPTIQSTVDEIVALDLPVSIFFWDKDRARR 239

Query: 660 ----IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
               +  GA  L G +    VRVV     D G   S  CGGTHV S GE+
Sbjct: 240 ECFGVGEGAD-LKGDEMG--VRVV-----DLGGRGSYPCGGTHVGSLGEL 281


>gi|146418128|ref|XP_001485030.1| hypothetical protein PGUG_02759 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 449

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 26/264 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAI---VERGILRTE 568
           V    T  + E GGQ  DTG   + D  ++ ++ V +  EG+   H     +E G   T 
Sbjct: 64  VELKDTILFPEGGGQPYDTGSIVLPDSTKVSVSKVVR--EGVTALHITPTPIEPG---TN 118

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           +SL +  D   RR   ++H   H   H LS +L S+  +       + + + V     ++
Sbjct: 119 VSLEINWD---RR---LDHMQQHTGQHLLSAVLDSYKIETLGWSLGEKINY-VELPMKVS 171

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYED 685
              ++ +   VND I + +P+   ++  +        + +   Y+     VRVV +    
Sbjct: 172 DEIVEEVSRKVNDYIFKAIPI--EVVTPDQHGGELDISHIPEDYDLSKGVVRVVKI---- 225

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G   +  C GTH++ST +I  + ++ +++IR G  R+    G R           LK+ 
Sbjct: 226 -GDLDANPCCGTHLTSTSQITAISLLHQTNIRGGNSRLHFCCGHRVAKLASELLAILKNA 284

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRK 769
            + L      +  ++E +   Y+K
Sbjct: 285 GALLSCQSDEITSKIELLNFNYKK 308


>gi|332180572|gb|AEE16260.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 583

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 578 QNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           Q  R   I HS +H++  A+ T+  GS V+   S    +G  +D   ++PIT  +L +IE
Sbjct: 5   QKERLAMIRHSTSHVMAQAVLTLFPGSKVAIGPS--IDNGFYYDFELTRPITQEDLAAIE 62

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRV--RVVSVEYEDGGVHSSAL 693
             +  I++ N     R ++R +A+   A      +  ND      +SV Y   G   + L
Sbjct: 63  KEMRKIVSGNHEFTRREVSRAEALKMFADQPYKVELINDLPADEPISV-YTQAGF--TDL 119

Query: 694 CGGTHVSSTGEI 705
           C G HV++T EI
Sbjct: 120 CRGPHVANTKEI 131


>gi|256960954|ref|ZP_05565125.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256951450|gb|EEU68082.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 18/160 (11%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE G L      ++T D+++   + + HS+ HL+ +AL  +  +     G  I   G  
Sbjct: 52  IVEDGSLE-----IVTPDHEDALGI-LRHSSAHLMANALRRLFPNIKFGVGPAID-SGFY 104

Query: 619 FDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKY 672
           +D  + + P+T+ +  +IE  +  I+ +N P+V + ++R +A+   A       L+    
Sbjct: 105 YDTDNGESPVTAEDFPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 164

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            D +  +   Y+ G      LC G HV STG I +  ++S
Sbjct: 165 EDEIITI---YDQGDF--VDLCRGVHVPSTGRIQVFKLLS 199


>gi|218782046|ref|YP_002433364.1| threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226701455|sp|B8FN26|SYT_DESAA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218763430|gb|ACL05896.1| Threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 636

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 7/152 (4%)

Query: 565 LRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           + T+ S+V  I  ++ + L I  HSA H++  A+  +        G  I  DG  +D+  
Sbjct: 51  IETDASVVF-ITTKDEQGLDIMRHSAAHVMAEAILNLYPDAKLTIGPVIE-DGFYYDIDM 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE- 682
             PI+  +   IE  +N II    P V + +++ +A+         T+    +   ++  
Sbjct: 109 P-PISEDDFPKIEQEINKIIKAKKPFVRKTLSKAEALDFYKDNAFKTELISELEDGTISI 167

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           YE GG   + LC G HV +TG +  L ++  S
Sbjct: 168 YEQGGF--TDLCRGPHVPNTGLVKTLKLMKVS 197


>gi|315122407|ref|YP_004062896.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495809|gb|ADR52408.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 653

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 18/187 (9%)

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  + + I   I    KKA  + ++  I +        S+ +      R  + I HS  
Sbjct: 22  TGYDVAESISKSIA---KKAIAVAINGTICDLSDTIQTGSIEIITPEDPRSLVVIRHSCA 78

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++  A+ +I        G  I  +G  +D    +P +S +   IE  +++I+ ++ P  
Sbjct: 79  HIMAEAVQSIWPKTQVAIGPVIE-NGFYYDFNREEPFSSDDFAKIEKKMHEIVTRDSPFC 137

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY----EDGGVHSSA----LCGGTHVSST 702
            + ++RE A       L  +K N+  ++  +E     +D  +++      LC G HV ST
Sbjct: 138 KKRLSREQA-----RKLFESK-NETYKLEILEKIPAEQDVTIYNQGEWLDLCRGPHVQST 191

Query: 703 GEIMLLY 709
           G+I   +
Sbjct: 192 GQIKKFF 198


>gi|110668486|ref|YP_658297.1| threonyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121687233|sp|Q18H54|SYT_HALWD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109626233|emb|CAJ52691.1| threonine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 17/153 (11%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V+  +  +  Q  + HSA H+   AL           G   T DG  +D+  S  +   
Sbjct: 59  VVIVTEQSDEYQRVLRHSAAHVFAQALQREYPDAKLTIGPP-TDDGFYYDIA-SVDLDEN 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV---VSVE 682
           +L++IE  +  II  ++P+  +  +RE+A +          +L T+  D   V   +  +
Sbjct: 117 DLETIETEMEAIIDADIPITQQYQSREEAFSKYENNPYKCDILETEAADEDPVSFYIQDD 176

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +ED       LC G HV STGEI  + +++ SS
Sbjct: 177 FED-------LCQGPHVDSTGEIGAITLLNISS 202


>gi|329927796|ref|ZP_08281857.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938197|gb|EGG34592.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 636

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  HL+  A+  + GS     G   +  DG  +D+     IT+ +L +IE  +  I+ +
Sbjct: 74  HSTAHLMAQAVKRLYGSESVHLGVGPVIEDGFYYDMDLGHSITADDLIAIEREMLKIVQE 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSST 702
           +LP++ + + R++A          T+    +    V+SV YE G      LC G H+ ST
Sbjct: 134 DLPILRKEVGRKEAERIFQDDPYKTELIRELPEDEVISV-YEQGEF--VDLCRGPHLPST 190

Query: 703 GEIMLLYIVS 712
           G I    ++S
Sbjct: 191 GRIKAFKLMS 200


>gi|313159213|gb|EFR58586.1| threonine--tRNA ligase [Alistipes sp. HGB5]
          Length = 650

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 12/132 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++HLL  AL  +        G  I  +G  +DV    PIT A+L  IE  + ++    
Sbjct: 73  HTSSHLLAEALEALYPGIKFGIGPAIE-NGFYYDVDSPTPITEADLPKIEQKMQELSRNK 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH------SSALCGGTHVS 700
             +V R + + +A+ +      G +Y  +V ++S + +DG +        + LC G H+ 
Sbjct: 132 EQLVRREVPKAEALKTFTEK--GDQY--KVELIS-DLQDGTISFYTNGAFTDLCRGPHIP 186

Query: 701 STGEIMLLYIVS 712
           +TG I  L + S
Sbjct: 187 NTGYIKALKLTS 198


>gi|254470004|ref|ZP_05083408.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960315|gb|EEA95511.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D     P T+ +L  IE  +  II 
Sbjct: 71  IRHDAAHVMAEAVQELWPETQVTIGPVIE-NGFYYDFKRDTPFTTEDLPKIEKKMQQIIQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTH 698
           +N      I +R +A    AA   G  Y  +V +V    ED  V          LC G H
Sbjct: 130 RNAKFTKEIWSRNEAKDYFAAK--GEDY--KVELVDAIPEDETVKIYKQGEWLDLCRGPH 185

Query: 699 VSSTGEI 705
           ++STG+I
Sbjct: 186 MASTGQI 192


>gi|26346899|dbj|BAC37098.1| unnamed protein product [Mus musculus]
          Length = 228

 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 19/210 (9%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G  I D   L++T  ++ A+      + +  
Sbjct: 35  KEVLSG--FHVVLEDTLLFPEGGGQPDDRG-TINDISVLRVT--RRGAQADHFTESPLSP 89

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G       + + +D++ R      HS  HL+      + G   +          +  D  
Sbjct: 90  G-----SQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWELGRLRSVIELD-- 142

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV 681
            S  +T+ ++ +IE +VN  I   LPV  R ++ +D  +       L   +   +RVV++
Sbjct: 143 -SPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTI 201

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           E  D     S +C GTHVS+  ++ ++ I+
Sbjct: 202 EGVD-----SNMCCGTHVSNLSDLQVIKIL 226


>gi|39884|emb|CAA28636.1| unnamed protein product [Bacillus subtilis]
          Length = 180

 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL  A+  I        G  I  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSAAHLLAQAIKRIYKDVKFGVGPVIE-NGFYYDVEMDEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIA 661
            NLP+V + ++RE+A A
Sbjct: 133 ANLPIVRKEVSREEAKA 149


>gi|256822932|ref|YP_003146895.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796471|gb|ACV27127.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +  +     G  I  +G  +D    KP +  +L++IE  +  I  
Sbjct: 71  IRHSTAHLLAQAVQRLFDNVQVTIGPVID-NGFYYDFATEKPFSEDDLRAIEKEMEKITK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +NL V    M R++A+A      +G +Y   +     + E   ++       LC G HV 
Sbjct: 130 ENLQVERTEMGRDEAVAFFRN--MGEEYKAEIIESIPQNETLSLYRQGDFIDLCRGPHVP 187

Query: 701 STGEI 705
           ST ++
Sbjct: 188 STSKL 192


>gi|1814431|gb|AAB99528.1| alanyl-tRNA synthetase [Sulfolobus solfataricus]
          Length = 174

 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFK-NIFTGQEKPVYQAVT 62
           V   R  FL FF+K GH  +P   ++      L  T + +V F+ ++ +G   P    + 
Sbjct: 62  VKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPLV 121

Query: 63  TVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSF 98
             Q  +R      D+DNVG T  RH T FEM  + +F
Sbjct: 122 VSQPSIRL----EDIDNVGVTFGRHLTTFEMAAHHAF 154


>gi|254467074|ref|ZP_05080485.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206687982|gb|EDZ48464.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 241

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 17/199 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ D+T FYA  GGQ GD+G  +    +  I    K  +G  V        +     ++ 
Sbjct: 30  IILDRTLFYATGGGQPGDSGKLLWAEGQCIIATTAKGEDGAVVLVPAEGSALPPVGATVT 89

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R      H   H   H LS ++   V+  G  I     R D   + P    + 
Sbjct: 90  QVLDWDRR----YGHMRVHTALHLLSVVIPLEVT--GGSIGDGKGRLDF--NMPEAPEDK 141

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYNDRVRVVSVEYEDG 686
           ++++D +  +I ++L V    +   DA       L+ T      +   +VR+V +  E+ 
Sbjct: 142 QALQDRLQALIDRDLEVTDDWIT--DAELDANPQLVKTMSVAPPRGAGQVRLVRIGTEEE 199

Query: 687 GVHSSALCGGTHVSSTGEI 705
            +     CGGTHV  TGEI
Sbjct: 200 QIDLQP-CGGTHVRRTGEI 217


>gi|304317243|ref|YP_003852388.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778745|gb|ADL69304.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ +++   H+++H++  A+  +        G  I  +G  +D    +P T  +
Sbjct: 58  ILTFDDEDGKKIYW-HTSSHIMAQAIKRLYKDVKLTIGPAID-NGFYYDFDVDEPFTVDD 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--- 688
              IE+ +N II ++L +   ++ RE+AI        G  Y  +V ++    ED  +   
Sbjct: 116 FSKIEEEMNKIIKEDLKLERFVLPREEAIKFMDEK--GEPY--KVELIKDLPEDAVISFY 171

Query: 689 ---HSSALCGGTHVSSTGEIMLLYIVS 712
                + LC G H+ STG +  + ++S
Sbjct: 172 RQGEFTDLCAGPHLPSTGMVKSIKLLS 198


>gi|294626197|ref|ZP_06704803.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599549|gb|EFF43680.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSA----LCGGT 697
           Q+  V+ ++  R + I     A  G +Y  ++R++    ED    G++       +C G 
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEY--KLRLIEDMSEDITAMGLYYHQEYVDMCRGP 185

Query: 698 HVSST 702
           HV +T
Sbjct: 186 HVPNT 190


>gi|294667581|ref|ZP_06732796.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602701|gb|EFF46137.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSA----LCGGT 697
           Q+  V+ ++  R + I     A  G +Y  ++R++    ED    G++       +C G 
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEY--KLRLIEDMSEDITAMGLYYHQEYVDMCRGP 185

Query: 698 HVSST 702
           HV +T
Sbjct: 186 HVPNT 190


>gi|194366578|ref|YP_002029188.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|238693469|sp|B4SQH4|SYT_STRM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194349382|gb|ACF52505.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSSAHLVGHAVKQLYPDVKMVIGPVIA-EGFYYDIYSERPFTPEDMAAIEKRMGELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALCGG 696
           Q+  V+ ++  R + I    A   G  Y        +D ++ + + Y    V    +C G
Sbjct: 130 QDYDVIKKVTPRAEVIEIFKAR--GEDYKLRLIEDMSDDIQAMGMYYHQEYVD---MCRG 184

Query: 697 THVSST 702
            HV +T
Sbjct: 185 PHVPNT 190


>gi|21243325|ref|NP_642907.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|25453288|sp|Q8PJE1|SYT_XANAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21108867|gb|AAM37443.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSA----LCGGT 697
           Q+  V+ ++  R + I     A  G +Y  ++R++    ED    G++       +C G 
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEY--KLRLIEDMSEDITAMGLYYHQEYVDMCRGP 185

Query: 698 HVSST 702
           HV +T
Sbjct: 186 HVPNT 190


>gi|288801328|ref|ZP_06406782.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331711|gb|EFC70195.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 654

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVNDIIA 644
           HS+ HLL  AL  +        G  I  +G  +DV     ++ +E     IE+ + ++  
Sbjct: 73  HSSAHLLAEALQELYPGIQFGFGPAIE-NGFFYDVMTKDGVSISENDFPKIEEKMRELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCGGTH 698
           +N P+V + +++ DA+   +A   G +Y  +   + ++ EDG + +      + LC G H
Sbjct: 132 KNEPIVRKDISKADALKEFSAD--GQEY--KCEHIDLDLEDGTISTYTQGAFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + + S
Sbjct: 188 LMSTGAIKAIKLTS 201


>gi|47565742|ref|ZP_00236782.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557378|gb|EAL15706.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  I G+ V+     +  +G  +D+     +   +
Sbjct: 63  IVTIDSNEGVEIA-RHSAAHILAQAIKRIYGN-VNLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  II +N+ +    ++RE+      AA L  + NDR+++  +E         
Sbjct: 121 LREIEKEMKKIINENIKIERVEVSREE------AAKLFQEMNDRLKLELLEAIPSEESVT 174

Query: 683 -YEDGGVHSSALCGGTHVSSTG 703
            Y+ G      LC G H+ STG
Sbjct: 175 LYKQGEF--VDLCRGPHLPSTG 194


>gi|302121711|gb|ADK92877.1| threonyl-tRNA synthetase [Hypericum perforatum]
          Length = 721

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 22/155 (14%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           TE  +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D    +P
Sbjct: 125 TEERIVLPTNQSSDRLLKIRHTCAHVMAMAVQKLYPDAKVTIGPWIE-NGFYYDFD-MEP 182

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYED 685
           +T  ELK I+  ++ II +NLP+V   ++R++A       ++      ++ ++ S++ E 
Sbjct: 183 LTDKELKRIKKEMDRIIGRNLPLVREEVSRDEA----QRRIMSVNEPYKMEILDSIKEEP 238

Query: 686 GGVHSSA---------------LCGGTHVSSTGEI 705
             ++  A               LC G HV +TG I
Sbjct: 239 ITIYHIAACRFISLFLGDEWWDLCAGPHVETTGII 273


>gi|325917697|ref|ZP_08179888.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536091|gb|EGD07896.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSA----LCGGT 697
           Q+  V+ ++  R + I     A  G +Y  ++R++    ED    G++       +C G 
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEY--KLRLIEDMSEDITAMGLYYHQEYVDMCRGP 185

Query: 698 HVSST 702
           HV +T
Sbjct: 186 HVPNT 190


>gi|71744796|ref|XP_827028.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831193|gb|EAN76698.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 468

 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 27/241 (11%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILR 566
           Q  +V+   +  + + GGQ  D G  I       L +  VQ++ +   ++       +L+
Sbjct: 61  QSYDVILTDSVLFPDGGGQPCDHGVLIRRETNEELPVRVVQRRGDSCVMNLPC----MLK 116

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D+  R     +HSA HLL   +       +      +T       +   K 
Sbjct: 117 VGEDVQLRVDWDRRLDHMQHHSAQHLLTAVVEDPSFCGLPTVSWALTQPYCHIVLPTGKR 176

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRI----------MNREDAIASGAAALLGTK----- 671
           I    L+ IE++ N +IA+ +PV  R+          + RE         L G++     
Sbjct: 177 IEPEMLQRIEEHCNRVIARAVPVRCRVYSSKEEYENDLQREPEKNDDGGRLRGSRPIPPD 236

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +R++ +E  D        C GTHV++  ++ +L ++ + + +    ++  I G+R 
Sbjct: 237 VAGPIRIIDMEGID-----CCTCCGTHVTNLAQLQVLKLLHQET-KGDTLKLFFIAGERV 290

Query: 732 R 732
           R
Sbjct: 291 R 291


>gi|298491630|ref|YP_003721807.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233548|gb|ADI64684.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 606

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+A+H++  A+  +        G  I  +G  +D  + +P +  +LK+I+  +  II
Sbjct: 26  KIRHTASHIMAMAVQKLFPKVQVTIGPWIE-NGFYYDFDNPEPFSDKDLKAIQKEMVKII 84

Query: 644 AQNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + LP+V   ++RE+A  +  G       +    ++   +     G     LC G HV +
Sbjct: 85  NRKLPLVREEVSREEAQKLIEGIKEPYKLEILADIKQEPITIYHLGEEWWDLCAGPHVEN 144

Query: 702 TGEI 705
           T +I
Sbjct: 145 TKDI 148


>gi|325919878|ref|ZP_08181868.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
 gi|325549662|gb|EGD20526.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPDDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I     A  G +Y  R +  +S +    G++       +C G HV
Sbjct: 130 QDYEVIKKVTPRAEVIE--LFAQRGEEYKLRLIEDMSADITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SST 702
            +T
Sbjct: 188 PNT 190


>gi|228985474|ref|ZP_04145631.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774239|gb|EEM22648.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  I G+ V+     +  +G  +D+     +   +
Sbjct: 63  IVTIDSNEGVEIA-RHSAAHILAQAIKRIYGN-VNLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  II +N+ +    ++RE+      AA L  + NDR+++  +E         
Sbjct: 121 LREIEKEMKKIINENIKIERVEVSREE------AAKLFQEMNDRLKLELLEAIPSEESVT 174

Query: 683 -YEDGGVHSSALCGGTHVSSTG 703
            Y+ G      LC G H+ STG
Sbjct: 175 LYKQGEF--VDLCRGPHLPSTG 194


>gi|225076640|ref|ZP_03719839.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
 gi|224952046|gb|EEG33255.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   KP T  ++ +IE  + ++IA
Sbjct: 77  IRHSCAHLVGHAVKQLYPDAKMVIGPVIE-DGFYYDIATEKPFTPDDVAAIEARMKELIA 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+  +  R + +        G +Y  R+     E E  G++       +C G HV 
Sbjct: 136 QDYDVIKVMTPRAETVKIFQDR--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 193

Query: 701 ST 702
           +T
Sbjct: 194 NT 195


>gi|209884754|ref|YP_002288611.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872950|gb|ACI92746.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 680

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 22/143 (15%)

Query: 575 IDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           I+  + R L  I H   H+L  A+ T+        G  I  +G  +D   ++P T  +  
Sbjct: 84  INRDDPRALELIRHDCAHVLAEAVQTLWPGTQVTIGPVIE-NGFYYDFFRNEPFTPEDFA 142

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA- 692
           +IE  + +IIA++ P    +  R+D             + D+     VE  D      + 
Sbjct: 143 AIEKKMREIIARDAPFTKEVWTRDDT---------KKVFADKGEAFKVELVDAIPADQSI 193

Query: 693 ----------LCGGTHVSSTGEI 705
                     LC G H++STG+I
Sbjct: 194 KIYKQGEWFDLCRGPHMTSTGKI 216


>gi|284048337|ref|YP_003398676.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952558|gb|ADB47361.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 636

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H+A+H++  A+  +        G  I   G  +D+      T  +L++IE  ++ II
Sbjct: 72  AIRHTASHVMAQAIQHLFPGTKFAIGPAIE-KGFYYDLDSDHVFTPDDLRAIEKEMSKII 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCGGT 697
             N P+V   + R +A+A   A     K    V ++    ED  + +      + LC G 
Sbjct: 131 KANYPLVRNEIPRAEALAKFKAEDEPYK----VELIEDLPEDAVISTYTQGDFTDLCAGP 186

Query: 698 HVSSTGEIMLLYIVS 712
           H  STG +    ++S
Sbjct: 187 HCPSTGRVKAFKLMS 201


>gi|229115852|ref|ZP_04245250.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228667595|gb|EEL23039.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 16/140 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID  +  +++  HSA H+L  A+  + G  ++     +  +G  +D+     +   +
Sbjct: 63  IITIDSNDGVEIA-RHSAAHILAQAVKRLYGD-INLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  IE  + +II +N+ +    ++RE+A      A L  + NDR+++  +E    G   +
Sbjct: 121 LPKIEKEMRNIIKENISIERVEVSREEA------AKLFQEMNDRLKLELLEAIPSGESVT 174

Query: 692 A--------LCGGTHVSSTG 703
                    LC G HV STG
Sbjct: 175 LYKQGEFVDLCRGPHVPSTG 194


>gi|206896471|ref|YP_002247167.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206739088|gb|ACI18166.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 14/137 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA+HL+  A+  +        G  I  +G  +D+   + +T A+L  IE+ +  +  
Sbjct: 62  LRHSASHLMAQAVKNLFPGTKLGIGPAIE-NGFYYDMLIPEGLTEADLTRIEEEMVRLSK 120

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-------LCGGT 697
           ++LPV  ++M +ED      A  L    N+  +V  +E  +G   +         LC G 
Sbjct: 121 ESLPVERQVMTKED------AKKLFQSLNEPFKVELIEEIEGDYVTVYRQGEFVDLCRGP 174

Query: 698 HVSSTGEIMLLYIVSES 714
           HV++TG I    ++S S
Sbjct: 175 HVNNTGLIKHFKLLSIS 191


>gi|316933337|ref|YP_004108319.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601051|gb|ADU43586.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 693

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 17/130 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  +IE  + +IIA
Sbjct: 102 IRHDCAHVLAEAVQSLWPGTQVTIGPVIE-NGFYYDFFRNEPFTPEDFAAIEKKMREIIA 160

Query: 645 QNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCG 695
           ++ P    +  R++A    A    A        +V +V+   ED  +          LC 
Sbjct: 161 RDKPFTKEVWTRDEAKKVFADNGEAF-------KVELVAAIPEDQTIKIYKQGEWFDLCR 213

Query: 696 GTHVSSTGEI 705
           G H++STG+I
Sbjct: 214 GPHMTSTGKI 223


>gi|254411303|ref|ZP_05025080.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196181804|gb|EDX76791.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 609

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ 
Sbjct: 32  IRHTASHVMAMAVQKLFPGTQVTIGPWIE-NGFYYDFAKPEPFTEQDLKAIKKEMVKILK 90

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG------GVHSSALCGGTH 698
           + LP++   ++RE+  A      LG  Y  ++ ++  + ED       G     LC G H
Sbjct: 91  RKLPLIREEVSREE--AERRIKELGEPY--KLEILQ-DLEDPITLYHLGEDWWDLCAGPH 145

Query: 699 VSSTGEI 705
           V +T +I
Sbjct: 146 VETTADI 152


>gi|291515296|emb|CBK64506.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Alistipes shahii
           WAL 8301]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++HLL  AL  +        G  I  +G  +DV    PIT A+L +IE+ + ++    
Sbjct: 27  HTSSHLLAEALEALYPGIKFGIGPAIE-NGFYYDVDSPTPITEADLPTIENKMVELSRNK 85

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH------SSALCGGTHVS 700
             ++ R + + +A+ +      G +Y  +V +++ + EDG +        + LC G H+ 
Sbjct: 86  EALLRREVPKAEALKTFTEK--GDQY--KVELIT-DLEDGTISFYTNGAFTDLCRGPHIP 140

Query: 701 STGEIMLLYIVS 712
           +TG I  L + S
Sbjct: 141 NTGYIKALKLTS 152


>gi|239831910|ref|ZP_04680239.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824177|gb|EEQ95745.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 674

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 90  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTPDDLPVIEKKMREIIQ 148

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    I +RE   A    A  G  Y   +       +D  ++       LC G H++
Sbjct: 149 RNKPFTKEIWSREK--AKQVFADKGENYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMA 206

Query: 701 STGEI 705
           STG+I
Sbjct: 207 STGQI 211


>gi|51893696|ref|YP_076387.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|73919833|sp|Q67LA3|SYT_SYMTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51857385|dbj|BAD41543.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 651

 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 14/148 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           VLT   +  R++   H++TH++  A+  +        G  +  +   +D    +P+T  +
Sbjct: 62  VLTFKDEEGREV-FRHTSTHIMAQAVKRLFPEAKLTVGPPLE-NSFYYDFDLPRPLTPED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRV---RVVSVEYE 684
           L+ IE  +  I+  + P+V + ++RE+A    A    G  Y     D++    VVS+ Y 
Sbjct: 120 LEKIEAEMAKIVEADYPIVRQEVDREEAKRFFAER--GEDYKVLLVDKIPEDEVVSI-YT 176

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            G    + LC G H+ STG +    ++S
Sbjct: 177 QG--EFTDLCVGPHLPSTGRVKAFKLLS 202


>gi|326431769|gb|EGD77339.1| threonyl-tRNA synthetase isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 766

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 17/137 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           HS+ H+L  A+    G H+     C  P   +G  +D+    + +  A+LK++E  VN  
Sbjct: 158 HSSAHILGEAMEMYFGGHL-----CYGPPIANGFFYDMDMGERTVNDADLKAVEKVVNKA 212

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           + Q  P    +M +ED +           +  R+    V      V+       LC G H
Sbjct: 213 VKQKQPFQRLVMTKEDLL----RMFEHNPFKQRIIKEKVTEPKTTVYRCGPLIDLCRGPH 268

Query: 699 VSSTGEIMLLYIVSESS 715
           +  TG++    +   SS
Sbjct: 269 IRHTGQVKAFAVTKSSS 285


>gi|302874879|ref|YP_003843512.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690504|ref|ZP_07632950.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577736|gb|ADL51748.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 635

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  R  ++ H+A+H+L  A+  +  +     G  I  +G  +D     PIT   
Sbjct: 59  ILTFDDEEGRS-TLRHTASHILAQAVKRLYPNVKLAIGPSIE-NGFYYDFDADFPITPEL 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSV--EYEDGG 687
           L+ IE  +N II +NL +    + RE+AI        L   K  + + + +V   Y  G 
Sbjct: 117 LEKIEKEMNKIIKENLKLEKFELPREEAIKYMEEKQELYKVKLIEDLPLDAVISFYTQG- 175

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
              + LC G HV  TG +  + + S
Sbjct: 176 -EFTDLCAGPHVIGTGMVKAVKLTS 199


>gi|188581528|ref|YP_001924973.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|179345026|gb|ACB80438.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 675

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  + +II+
Sbjct: 71  IRHDCAHVLAEAVQALWPGTQVTIGPVIE-NGFYYDFAKDEPFTPEDFPKIEAKMREIIS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ P    +  R+D  A  A    G +Y   +       ED  ++       LC G H++
Sbjct: 130 RDAPFTKEVWTRDDVKALFAEK--GERYKVELVDAIPAGEDLKIYRQGEWFDLCRGPHMT 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKV 192


>gi|169334538|ref|ZP_02861731.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259255|gb|EDS73221.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
          Length = 637

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 25/163 (15%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  + G  V         +G  +D     PIT  +L+ IE  +  I+ +N
Sbjct: 73  HTTSHILAQAVKRLYGDKVKLAIGPSIDNGFYYDFDIETPITENDLEKIEAEMKKIVKEN 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGG 696
           L +   ++ R++AI     A      N+  +V  +E          Y+ G    + LC G
Sbjct: 133 LSIEKFVLPRKEAIGFEKEA------NEDYKVELIEDLPEDSIISFYKQG--EFTDLCAG 184

Query: 697 THVSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRAR 732
            H+ +T  +  + ++S +       S +  ++R+  I+  +A+
Sbjct: 185 PHLLNTKPVKAIKLLSTTGAYWRGDSNKKMLQRVYGISFPKAK 227


>gi|283851379|ref|ZP_06368661.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283573329|gb|EFC21307.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 647

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  S     G  I  +G  +D    +P T  +L++IE  +   IA
Sbjct: 71  IRHSAAHIMAEAVKKLFPSVQVTIGPAIE-NGFYYDFAFERPFTPEDLEAIEAEMRASIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHV 699
            N P     + + DA A  A+   G  Y     ++ +   +V     G+ +  LC G HV
Sbjct: 130 ANHPFSCTYVPKADAKALFASQ--GESYKLEIMDENIVGDTVSLYRHGLFTD-LCRGPHV 186

Query: 700 SSTGEIMLLYIVS 712
            +TG +  + ++S
Sbjct: 187 PTTGMVRAVKLLS 199


>gi|284799642|ref|ZP_05984463.2| threonine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284797591|gb|EFC52938.1| threonine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   KP T  ++ +IE  + ++IA
Sbjct: 77  IRHSCAHLVGHAVKQLYPDAKMVIGPVIE-DGFYYDIATEKPFTPDDVAAIEARMKELIA 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+  +  R + +        G +Y  R+     E E  G++       +C G HV 
Sbjct: 136 QDYDVIKVMTPRAETVKIFQDR--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 193

Query: 701 ST 702
           +T
Sbjct: 194 NT 195


>gi|325982725|ref|YP_004295127.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532244|gb|ADZ26965.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 635

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D ++ +  T  +L +IE  + +I  
Sbjct: 71  IRHSCAHLLAHAVKELFPEAQVTIGPVID-DGFYYDFSYKRSFTFEDLTAIEKRMIEISK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++L +  +I+ R  AI        G  Y  ++       ED  ++S    + LC G HV 
Sbjct: 130 RDLKIDRKILERAKAIDFFKKQ--GEFYKAQIIESIPGDEDLSLYSQGDFTDLCRGPHVP 187

Query: 701 STGEIMLLYIV 711
           +T +I +  ++
Sbjct: 188 ATSKIKVFKLM 198


>gi|257092825|ref|YP_003166466.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045349|gb|ACV34537.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 638

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ +A+  +  +     G  I  +G  +D    +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLMAYAVKELFPAAQVTIGPVIE-NGFYYDFACERPFTLEDLAAIEKRMTELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++L V   +  R++AIA   +  +G  Y   +       + VS+ Y +G      LC G 
Sbjct: 130 RDLLVQREVWQRDEAIAFFKS--IGEHYKAELIDAIPPGQEVSL-YREGDF--VDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 185 HVPSTGKLKVFKLM 198


>gi|266623641|ref|ZP_06116576.1| alanyl-tRNA synthetase [Clostridium hathewayi DSM 13479]
 gi|288864565|gb|EFC96863.1| alanyl-tRNA synthetase [Clostridium hathewayi DSM 13479]
          Length = 182

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           + +V+ D+T FY E GGQ GDTG  +G    +++ DV +KA G  +H      G L    
Sbjct: 28  RYQVMLDRTGFYPEGGGQPGDTG-RLGP---VKVLDVHEKA-GEIIHET---DGPLEAGT 79

Query: 570 SLVLTIDYQNRRQLSINHSATHLL 593
           ++  TID++ R     NHS  H+ 
Sbjct: 80  AVAGTIDWERRFGYMQNHSGEHIF 103


>gi|229087132|ref|ZP_04219282.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696200|gb|EEL49035.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  AL   L   V      +  +G  +D+   + IT  + K IE  +  I+ 
Sbjct: 74  LRHSTAHLLAQALKR-LYKDVKLGIGPVIENGFYYDIDMEEAITVEDFKKIEKEMQKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYEDGGVHSSALCGGTHV 699
           +NL +V   + R +A+         L     ND     V+S+ YE G      LC G H+
Sbjct: 133 ENLEIVRHEVPRAEALRRYEEIGDELKLDLINDLPEDAVISI-YEQGEFFD--LCRGVHL 189

Query: 700 SSTGEIMLLYIVS 712
            STG+I +  ++S
Sbjct: 190 PSTGKIKVFKLLS 202


>gi|229032221|ref|ZP_04188194.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|229076078|ref|ZP_04209046.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229105203|ref|ZP_04235852.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678129|gb|EEL32357.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228706941|gb|EEL59146.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|228729001|gb|EEL80004.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 645

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDAKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|302802909|ref|XP_002983208.1| hypothetical protein SELMODRAFT_422552 [Selaginella moellendorffii]
 gi|300148893|gb|EFJ15550.1| hypothetical protein SELMODRAFT_422552 [Selaginella moellendorffii]
          Length = 262

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +GL   + + S L  D+ L+G+ AF L+DT+G P+D+ Q ++       +DI  FN+ +E
Sbjct: 6   QGLEKFNRLTSDLKSDQ-LSGEDAFLLWDTYGFPIDLTQ-LMAEEKHIRVDIEGFNRVME 63

Query: 424 EQRSRARA 431
           E + +ARA
Sbjct: 64  EAKEKARA 71


>gi|206974097|ref|ZP_03235015.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217959885|ref|YP_002338441.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229139078|ref|ZP_04267655.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|206748253|gb|EDZ59642.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066290|gb|ACJ80540.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228644433|gb|EEL00688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 639

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  I G+ V+     +  +G  +D+     +   +
Sbjct: 63  IVTIDSDEGVEIA-RHSAAHILAQAIKRIYGN-VNLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  II +N+ +    ++RE+      AA L  + NDR+++  +E         
Sbjct: 121 LREIEKEMKKIINENIKIERVEVSREE------AAKLFQEMNDRLKLELLEAIPSEESVT 174

Query: 683 -YEDGGVHSSALCGGTHVSSTG 703
            Y+ G      LC G H+ STG
Sbjct: 175 LYKQGEF--VDLCRGPHLPSTG 194


>gi|169797157|ref|YP_001714950.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|184156915|ref|YP_001845254.1| threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|215484620|ref|YP_002326855.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|239500701|ref|ZP_04660011.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|294839270|ref|ZP_06783953.1| threonyl-tRNA synthetase [Acinetobacter sp. 6013113]
 gi|294840278|ref|ZP_06784961.1| threonyl-tRNA synthetase [Acinetobacter sp. 6014059]
 gi|294858970|ref|ZP_06796739.1| threonyl-tRNA synthetase [Acinetobacter sp. 6013150]
 gi|301510743|ref|ZP_07235980.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|226701398|sp|B7H005|SYT_ACIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238685492|sp|A3M299|SYT_ACIBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688031|sp|B0V5P2|SYT_ACIBY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690968|sp|B2HTH0|SYT_ACIBC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169150084|emb|CAM87978.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|183208509|gb|ACC55907.1| Threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193076379|gb|ABO11043.2| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|213985706|gb|ACJ56005.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322506811|gb|ADX02265.1| thrS [Acinetobacter baumannii 1656-2]
 gi|323516680|gb|ADX91061.1| threonyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIKVFTDR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E +  G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLVEDMPEEKAMGLYYHQEYVDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|312379150|gb|EFR25519.1| hypothetical protein AND_09072 [Anopheles darlingi]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 19/206 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+F+ T  + E GGQ  D G  +GD  R   + V+K A+ I       E    +    +V
Sbjct: 30  VIFEDTILFPEGGGQPYDHG-LVGD--RKVKSIVRKGAQAIHFFEGDEETAPFKVGDEVV 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC--ITPDGLRFDVTHSKPITSA 630
             +D+  R     +H   H   H ++ I    +  N     +  +    D+  +K ++  
Sbjct: 87  QRLDWDRR----FDHMQQHSGQHLITAIFDRELKYNTKSWWLGSESSYIDL-DAKDVSVE 141

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI----ASGAAALLGTKYNDRVRVVSVEYEDG 686
           +L  +E   N +I    PV  ++   +D       + A   L    +  +RVV++E    
Sbjct: 142 QLALVEKICNQLIVDCTPVGVKVYEADDPALKSDVTRATRGLPEDVSGPLRVVTIE---- 197

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
           GV S+ +C GTHV +  ++  + ++S
Sbjct: 198 GVESN-MCCGTHVRNLAQLQTIKLLS 222


>gi|126466032|ref|YP_001041141.1| Ala-tRNA(Pro) hydrolase [Staphylothermus marinus F1]
 gi|126014855|gb|ABN70233.1| Ala-tRNA(Pro) hydrolase [Staphylothermus marinus F1]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 13/198 (6%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMS 570
           ++VFD T F+  +GG   DTG  + D    ++  V   K  G  VH    E   L+    
Sbjct: 27  KIVFDTTIFHPRSGGVDHDTGKLVKDNKEYRVVQVLFDKNIGDVVHIVDGEHD-LKAGDV 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+  R +L   H+A H+L   +    G+ ++  G  I+ +   +D    +     
Sbjct: 86  VKQVIDWNRRYKLMRLHTAAHILASVMYRDYGALIT--GGNISEE-YAYDDYSLEEFNKE 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGG 687
               + +  N II +N+ V    + RE+A+       L  +     D +R+V +     G
Sbjct: 143 LFLDVVEKANQIIKRNIEVKVYWLPREEALKIPGIVKLAKRMPPNIDMLRIVEIP----G 198

Query: 688 VHSSALCGGTHVSSTGEI 705
           V   A  GG HV +TGEI
Sbjct: 199 VDIQA-DGGPHVKNTGEI 215


>gi|241758603|ref|ZP_04756718.1| threonine--tRNA ligase [Neisseria flavescens SK114]
 gi|241321255|gb|EER57427.1| threonine--tRNA ligase [Neisseria flavescens SK114]
          Length = 637

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPDAKMVIGPVIE-DGFYYDIATEKPFTPDDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+  +  R + +        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVIKVMTPRAETVKIFQDR--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|213156053|ref|YP_002318098.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|301346223|ref|ZP_07226964.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301596041|ref|ZP_07241049.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|226701414|sp|B7I688|SYT_ACIB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213055213|gb|ACJ40115.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIKVFTDR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E +  G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLVEDMPEEKAMGLYYHQEYVDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|153009484|ref|YP_001370699.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|151561372|gb|ABS14870.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 661

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 77  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTPDDLPVIEKKMREIIQ 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P    + +RE   A    A  G  Y   +       +D  ++       LC G H++
Sbjct: 136 RNKPFTKEVWSREK--AKQVFADKGENYKVELVEAIPAGQDLKIYYQGDWFDLCRGPHMA 193

Query: 701 STGEI 705
           STG+I
Sbjct: 194 STGQI 198


>gi|297527295|ref|YP_003669319.1| Threonyl/alanyl tRNA synthetase SAD [Staphylothermus hellenicus DSM
           12710]
 gi|297256211|gb|ADI32420.1| Threonyl/alanyl tRNA synthetase SAD [Staphylothermus hellenicus DSM
           12710]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 19/201 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           ++VF+ T F+  +GG   DTG  + DG   ++  V        V H +     L+    +
Sbjct: 27  KIVFNTTIFHPRSGGVDHDTGKLVKDGGEYRVVQVLIDKNIGDVVHIVDGEHDLKVGDVV 86

Query: 572 VLTIDYQNRRQLSINHSATHLL-------HHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
              ID+  R +L   H+A H+L       H AL  I G ++S+  +        +D    
Sbjct: 87  KQVIDWNRRYKLMRLHTAAHILASIMYNEHGAL--ITGGNISEEYA--------YDDYSL 136

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +         I +  N II +N+ V    + RE+A+       L  +    + V+ +  E
Sbjct: 137 EEFNKELFLDIVEKANQIIKRNIEVKIYWLPREEALKIPGIVKLAKRTPPNIDVLRI-VE 195

Query: 685 DGGVHSSALCGGTHVSSTGEI 705
             GV   A  GG HV +TGEI
Sbjct: 196 IPGVDIQA-DGGPHVKNTGEI 215


>gi|229175285|ref|ZP_04302800.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608117|gb|EEK65424.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDAKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI---ASGAAALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|187251838|ref|YP_001876320.1| threonyl and alanyl tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|186971998|gb|ACC98983.1| Threonyl- and alanyl-tRNA synthetase second additional domain
           [Elusimicrobium minutum Pei191]
          Length = 151

 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A H+L+  +    G   S+N   I     + D        + ++  IE  VN IIA+N
Sbjct: 16  HTAEHILNRTMVNAFGCARSKNAH-IEKSKSKCDYFLPSAPAAEQIAEIEKIVNKIIAEN 74

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           L V+ + M R +       + L     D +RV+ V     G +    C G HV +T EI
Sbjct: 75  LDVIEKFMPRAEVSKIADISKLPESAGDMLRVIFV-----GDYDVCPCIGKHVKNTAEI 128


>gi|118497781|ref|YP_898831.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323753|ref|ZP_03057529.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208779844|ref|ZP_03247188.1| threonyl-tRNA synthetase [Francisella novicida FTG]
 gi|166223342|sp|A0Q762|SYT_FRATN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118423687|gb|ABK90077.1| threonyl-tRNA synthetase [Francisella novicida U112]
 gi|194322117|gb|EDX19599.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208744299|gb|EDZ90599.1| threonyl-tRNA synthetase [Francisella novicida FTG]
          Length = 634

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  S     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPSTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQVKIYTQDNFSDLCRGPHI 185

Query: 700 SSTG 703
            +T 
Sbjct: 186 PNTS 189


>gi|47157012|gb|AAT12378.1| alanyl-tRNA synthetase [Antonospora locustae]
          Length = 208

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 27/154 (17%)

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQDEKLKSLASF 748
           CGG HV  T EIM + I+SE+ +  G RRI A+TG+ A      +  + +   ++S    
Sbjct: 1   CGGVHVKKTSEIMRIRIISENGVSLGTRRIVALTGEAALKAEEDAKRLIECATMESAVPT 60

Query: 749 LKVSQGNVVGRVEE---IWEEYRKLQLIHAKRK------LQLNVEDLSCHKIADVNFMSH 799
           + + +   + R++E   I ++ R+++ I  + K      LQ+  + L    +AD    + 
Sbjct: 61  IPLVEKRQIERIKEARAIEQDARRVKAIVEQLKRANEIVLQIKTKTL----MADSKERTF 116

Query: 800 IISEVDS---------KELKSVMDALQKKIQSGI 824
           +  E DS         K+++ VMD  +K   +GI
Sbjct: 117 VSFECDSSALSSKDIKKQVRKVMDIFEKNNINGI 150


>gi|85720049|gb|ABC75593.1| alanyl-tRNA synthetase isoform 3 [Ictalurus punctatus]
          Length = 259

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%)

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+      D   +SL
Sbjct: 8   GALTSIEFCGGTHLQNSGHAAQFVIVSEEAIAKGIRRIVAVTGAAAQKAQRKADALHQSL 67

Query: 746 ASF 748
           ++ 
Sbjct: 68  SAM 70


>gi|16331761|ref|NP_442489.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501062|sp|Q55806|SYT_SYNY3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1001722|dbj|BAA10559.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 603

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G   T  G  +D   ++P T A+LK+I+  +  II 
Sbjct: 25  IRHTTSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVAEPFTEADLKAIKKEMVKIIN 83

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHV 699
           + LPV+   ++RE+A       +   +   ++ ++   +E   V+        LC G H+
Sbjct: 84  KKLPVIREEISREEA----KQRIESIQEPYKLEILDSIHEPITVYHLGDQWWDLCAGPHL 139

Query: 700 SSTGEIMLLYIVSES 714
            ST +I    I  ES
Sbjct: 140 ESTADINPKAIALES 154


>gi|21231898|ref|NP_637815.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767974|ref|YP_242736.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991100|ref|YP_001903110.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|25453287|sp|Q8P7Z2|SYT_XANCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81306049|sp|Q4UW57|SYT_XANC8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229558465|sp|B0RRG9|SYT_XANCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21113622|gb|AAM41739.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573306|gb|AAY48716.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732860|emb|CAP51054.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 636

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 73  IRHSCAHLVGHAVKQLYPDVKMVIGPVIA-EGFYYDIYSERPFTPEDMAAIEQRMQQLIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALCGG 696
           Q+  V+ ++  R + I     A  G +Y        +D +  + + Y    V    +C G
Sbjct: 132 QDYDVIKKVTPRAEVIE--VFAQRGEEYKLRLIEDMSDDITAMGLYYHQEYVD---MCRG 186

Query: 697 THVSST 702
            HV +T
Sbjct: 187 PHVPNT 192


>gi|189424928|ref|YP_001952105.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189421187|gb|ACD95585.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 646

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 12/134 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +HL+  A+  +  +     G  +  +G  +D   + P T  +L+ IE  + ++ A
Sbjct: 83  IRHSTSHLMAQAVKELFPAAKVTIGPAVE-NGFYYDFDVAAPFTPEDLEKIEKRMAELAA 141

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV------RVVSVEYEDGGVHSSALCGGTH 698
              P+  ++M+  +AIA      +G  Y   +        VS+ Y  G    + LC G H
Sbjct: 142 AGQPLTRKVMSAAEAIAFFEQ--MGEPYKKELIEGIGAETVSI-YTQG--EFADLCRGPH 196

Query: 699 VSSTGEIMLLYIVS 712
           V +T ++    ++S
Sbjct: 197 VPNTNKLKAFKLLS 210


>gi|228999356|ref|ZP_04158935.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006911|ref|ZP_04164541.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754311|gb|EEM03726.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760301|gb|EEM09268.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 643

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T+D ++   + + HS  HLL  AL   L   V      +  +G  +D+   + IT  +
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKR-LYKDVKLGIGPVIENGFYYDIDMEEAITVED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYEDG 686
              IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE G
Sbjct: 120 FPKIEKEMQKIVNENLEIVRHEVPRAEALRRYEEIGDELKLELINDLPEDAVISI-YEQG 178

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
             +   LC G H+ STG+I +  ++S
Sbjct: 179 EFYD--LCRGVHLPSTGKIKMFKLLS 202


>gi|323490461|ref|ZP_08095668.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323395865|gb|EGA88704.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 642

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 15/136 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS+ HLL  A+  +        G  I   G  +D+     ITS +L  IE  +  II 
Sbjct: 74  LRHSSAHLLAQAIKRMYPDAKLGIGPVIE-HGFYYDIDTETAITSEDLPLIEKEMKQIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +N+ V+   + R +A    AA         L      D+V +    YE G      LC G
Sbjct: 133 ENVEVIRHDVTRAEAQERFAAIEDPYKLELLEAIPDGDQVSI----YEQGDFFD--LCRG 186

Query: 697 THVSSTGEIMLLYIVS 712
            HV STG++    ++S
Sbjct: 187 VHVPSTGKLKEFKLLS 202


>gi|78048351|ref|YP_364526.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325927169|ref|ZP_08188432.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
 gi|123743902|sp|Q3BRT7|SYT_XANC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78036781|emb|CAJ24474.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325542482|gb|EGD13961.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
          Length = 634

 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPDDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSA----LCGGT 697
           Q+  V+ ++  R + I     A  G +Y  ++R++    ED    G++       +C G 
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEY--KLRLIEDMSEDITAMGLYYHQEYVDMCRGP 185

Query: 698 HVSST 702
           HV +T
Sbjct: 186 HVPNT 190


>gi|254804601|ref|YP_003082822.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668143|emb|CBA04768.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 637

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     + E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPKVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|167042805|gb|ABZ07523.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_ANIW137I15]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 21/150 (14%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           +T D    RQ+  +HS  H++  A+  +        G  I  +G  +D    +P T  +L
Sbjct: 46  ITFDDPEGRQV-YHHSTAHIMAEAVQDLFPGTKVTIGPPIE-NGFYYDFDRDEPFTPDDL 103

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + IE  + +I A+N P V   +++E+A            + +R     +E  DG    + 
Sbjct: 104 ERIETRMREIRAENRPFVREPVSKEEA---------RKLFQERDEPYKLELLDGIPDETV 154

Query: 693 ----------LCGGTHVSSTGEIMLLYIVS 712
                     LC G HV STG I  + ++S
Sbjct: 155 SIYRQGEWLDLCRGPHVPSTGFIEAVKLLS 184


>gi|312113796|ref|YP_004011392.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218925|gb|ADP70293.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 17/178 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++  T  +L  IE+ + +IIA
Sbjct: 71  IRHDAAHVMAEAVQELFPGTQVTIGPVIE-NGFYYDFYRAESFTPDDLAKIEEKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSA----LCGGTH 698
            + P V  + +R  A    AA   G K    V ++    E +D  ++       LC G H
Sbjct: 130 ADKPFVKEVWSRAKAQDFFAAEGEGFK----VELIDAIPEGQDLKIYRQGDWLDLCRGPH 185

Query: 699 VSSTGEI---MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           + STG++     L  ++ S  R    R +    QR        DE+LKS  + L+ ++
Sbjct: 186 LPSTGKVGKAFKLMRLAGSYWRGDSNREQL---QRIYGTAWASDEQLKSYLTMLEEAE 240


>gi|78186013|ref|YP_374056.1| threonyl-tRNA synthetase, class IIA [Chlorobium luteolum DSM 273]
 gi|78165915|gb|ABB23013.1| Ser-tRNA(Thr) hydrolase [Chlorobium luteolum DSM 273]
          Length = 677

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 26/159 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA+H++  A+  +        G  +   G  +D+  S      +L+SIE  + +I  ++
Sbjct: 102 HSASHIMASAVEELFPGARFGAGPAVE-QGFYYDIASSHRFNEDDLRSIEKKMLEIAGRD 160

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCG 695
            P+V   M RE AI         T   D  +V  +E           Y +GG   + LC 
Sbjct: 161 TPIVREEMTREAAI-----EFFKTVRRDPYKVEILEDTLKNVPTVSLYHEGGF--TDLCT 213

Query: 696 GTHVSSTGEI--MLLYIVSES-----SIRAGIRRIEAIT 727
           G H+ ST  +  + L+ +S S     S R  ++RI  I 
Sbjct: 214 GPHLPSTSRLKAVRLFNISSSFWRGDSSRESMQRIYGIA 252


>gi|228967672|ref|ZP_04128693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792048|gb|EEM39629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI---ASGAAALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+      +  L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEISDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|302389962|ref|YP_003825783.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200590|gb|ADL08160.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HS +H++  A+  +  +     G  I  +G  +D    +  T  +L+ IE  +  I+
Sbjct: 73  AFRHSTSHVMAQAVKRLFPNVKLAIGPSIE-EGFYYDFDRDESFTPEDLERIEKEMEKIV 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGT 697
           A++ P +   ++RE+A+       +G  Y  +V +V    +D  +          LC G 
Sbjct: 132 AEDQPFIRMEVSREEAVK--ILKEMGEPY--KVELVENLPDDAKISFYKNGEFIDLCAGP 187

Query: 698 HVSSTGEIMLLYIVS 712
           H+ STG I    + S
Sbjct: 188 HIPSTGRIKAFKLTS 202


>gi|67459169|ref|YP_246793.1| metal-dependent hydrolase [Rickettsia felis URRWXCal2]
 gi|67004702|gb|AAY61628.1| Predicted metal-dependent hydrolases [Rickettsia felis URRWXCal2]
          Length = 235

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 35/223 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--- 569
           ++ DQT FY + GGQ  D G    D     +T V++    I   H I   G    E+   
Sbjct: 31  IILDQTIFYPQGGGQPSDQGVIQNDYFEANVTLVRQVDTEI--RHYI---GAASNEIPIN 85

Query: 570 SLVLTIDYQNRRQL-SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           S++  +  +NRR L S  H+A HLL + +  +     +  G    P     +     P+ 
Sbjct: 86  SIINCLVDKNRRMLNSRYHTAAHLLGNIVEILYPMLKAVKGHSF-PGEAYVEFQGDVPV- 143

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVS 680
             ++  I++ V+  IA+N        N+ +   +   +     Y        N + RV+ 
Sbjct: 144 --DVTQIQNTVDQTIAKN--------NKTEIFETDPISFEQQFYKLPYIIPENKKFRVMR 193

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +     G  +   CGGTH+SST EI  + ++ +  ++  I RI
Sbjct: 194 I-----GDMAPVPCGGTHLSSTTEIGKI-LIGKVKLKNNIVRI 230


>gi|226944147|ref|YP_002799220.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259516344|sp|C1DF42|SYT_AZOVD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226719074|gb|ACO78245.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDVAAIEQRMRELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++  VV ++  RE  I    +   G  Y  R+       + + + Y +  V    +C G 
Sbjct: 130 RDYDVVKKMTPREQVIEVFKSR--GEDYKLRLIDDMPDEKAMGLYYHEEYVD---MCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|307297735|ref|ZP_07577541.1| Threonyl/alanyl tRNA synthetase SAD [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916995|gb|EFN47377.1| Threonyl/alanyl tRNA synthetase SAD [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 41/265 (15%)

Query: 520 FYAEAGGQLGDTG----------CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           F     GQLGD G            IGD + L+I    +K +G  V              
Sbjct: 25  FVDGEAGQLGDRGEVDSFKIKSVKKIGDEVVLEIDGKIEKNKGEMVD------------- 71

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS--QNGSCITPDGLRFDVTHSKPI 627
              + ID + R  +S  H+A HLL     + + +     Q G   T   L   +     I
Sbjct: 72  ---IRIDEERRIDISQQHTAQHLLSAVFLSEMDAETVGFQMGEEYTTIDLSLGILKDDMI 128

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG---TKYNDRVRVVSVEYE 684
                  +E   N+ I ++  V   +++R +         +    T+    +R+V ++  
Sbjct: 129 DY-----VERLCNNFIGEDRAVRKFVVDRSEIQKYHLRKEIKREITESEREIRLVEID-- 181

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G+  SA C G HV  TG+I LL I+    ++  + R+  + G+RA +    + + + +
Sbjct: 182 --GIDLSA-CSGLHVERTGQIGLLKILKHEKVKGSLTRVYFVAGKRALNDYFTKHKLITN 238

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRK 769
            +  L  S  ++  R+  + +E R+
Sbjct: 239 SSLLLTCSYLDLTDRIASLIDEIRQ 263


>gi|168027962|ref|XP_001766498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682407|gb|EDQ68826.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 615

 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  +   + I H+  H+L  A+  +        G  I   G  +D    +  T  
Sbjct: 32  IVLPTNESSENLVKIRHTTAHVLAMAVQKLFPEAQVTIGPWIE-KGFYYDFDMKEAFTEK 90

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGV 688
           +LK I+  ++ II++NLP+V   ++RE+A     A     K    + ++   +     G 
Sbjct: 91  DLKKIKKEMDRIISRNLPLVREEVSREEAERRIKAINEPYKLEILEGIKSEPITIYRIGE 150

Query: 689 HSSALCGGTHVSSTGEI 705
               LC G HV  TG++
Sbjct: 151 DWWDLCAGPHVERTGQL 167


>gi|192292254|ref|YP_001992859.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286003|gb|ACF02384.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 17/130 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  +IE  + +IIA
Sbjct: 102 IRHDCAHVLAEAVQSLWPGTQVTIGPTIE-NGFYYDFFRNEPFTPEDFAAIEKKMREIIA 160

Query: 645 QNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCG 695
           ++ P    +  R++A    A    A        +V +V    ED  +          LC 
Sbjct: 161 RDKPFTKEVWTRDEAKKVFADNGEAF-------KVELVDAIPEDQTIKIYKQGEWFDLCR 213

Query: 696 GTHVSSTGEI 705
           G H++STG+I
Sbjct: 214 GPHMTSTGKI 223


>gi|114566616|ref|YP_753770.1| threonyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318333|sp|Q0AY05|SYT_SYNWW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114337551|gb|ABI68399.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 635

 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 14/146 (9%)

Query: 575 IDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D+++ R   +  HS+ H++  A+  +        G  I   G  +D       T  +  
Sbjct: 60  LDFEDERAREVYRHSSAHVMAQAVKRLWPESKLAIGPAID-KGFYYDFDSGHTFTPEDFA 118

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA 692
           +IE+ +  II  + P+V + ++RE+A+          +  D ++ ++    ED  + +  
Sbjct: 119 AIEEEMKRIIKADYPIVRKELSREEAL-----QFFSERSEDYKLELIEDLPEDAVISTYQ 173

Query: 693 ------LCGGTHVSSTGEIMLLYIVS 712
                 LC G H+ STG +  + ++S
Sbjct: 174 QGEFVDLCAGPHLPSTGRLKAIKVMS 199


>gi|323484406|ref|ZP_08089772.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
 gi|323402184|gb|EGA94516.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ +L  IE  +  II
Sbjct: 70  ALRHTASHVMAQAVKRLYPDTKLAIGPSIA-DGFYYDVDPATPLTAEDLPKIETEMKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGV------HSSALCGG 696
            + L +    ++RE+AI     AL+  K    +V ++    ED  +        + LC G
Sbjct: 129 KEGLALERFTLSREEAI-----ALMKEKEEPYKVELIEDLPEDAEISFYRQGEFTDLCAG 183

Query: 697 THVSST 702
            H+ +T
Sbjct: 184 PHLMNT 189


>gi|260556061|ref|ZP_05828280.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260410116|gb|EEX03415.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y 
Sbjct: 100 -EGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIRVFTDR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E +  G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLVEDMPEEKAMGLYYHQEYVDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|118444060|ref|YP_877833.1| threonyl-tRNA synthetase [Clostridium novyi NT]
 gi|166223336|sp|A0PZN1|SYT_CLONN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118134516|gb|ABK61560.1| threonyl-tRNA synthetase [Clostridium novyi NT]
          Length = 637

 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 20/180 (11%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR-QLSINHSATHLLHHALSTILG 602
           T ++KKA G  ++    E   +  E S +  + ++++  + ++ H+A+H+L  A+  +  
Sbjct: 29  TSLRKKALGAKINGEKAELMDVINEDSTLEILTFEDQEGKDTLRHTASHILAQAVKRLYP 88

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                 G  I  +G  +D       T   L+ IE  +N I+ +NL +     +REDAI  
Sbjct: 89  EVKLAIGPSIE-NGFYYDFDAEFSFTPEILEKIEKEMNKIVKENLQLKKFTKSREDAIN- 146

Query: 663 GAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                   + N+  +V  +E          YE G      LC G HV ST E+  + ++S
Sbjct: 147 -----FMKERNEDYKVELIEDLPEESIISFYEQGDF--VDLCAGPHVPSTKEVKAIKLLS 199


>gi|39936469|ref|NP_948745.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|73919820|sp|Q6N4D3|SYT_RHOPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39650325|emb|CAE28847.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 658

 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 17/130 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  +IE  + +IIA
Sbjct: 73  IRHDCAHVLAEAVQSLWPGTQVTIGPTIE-NGFYYDFFRNEPFTPEDFAAIEKKMREIIA 131

Query: 645 QNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCG 695
           ++ P    +  R++A    A    A        +V +V    ED  +          LC 
Sbjct: 132 RDKPFTKEVWTRDEAKKVFADNGEAF-------KVELVDAIPEDQTIKIYKQGEWFDLCR 184

Query: 696 GTHVSSTGEI 705
           G H++STG+I
Sbjct: 185 GPHMTSTGKI 194


>gi|188995191|ref|YP_001929443.1| hypothetical protein PGN_1327 [Porphyromonas gingivalis ATCC 33277]
 gi|188594871|dbj|BAG33846.1| hypothetical protein PGN_1327 [Porphyromonas gingivalis ATCC 33277]
          Length = 336

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 54/317 (17%)

Query: 11  FLEFFQKNGHELLPSSSLIPC---NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67
           F +F ++ G+     S+LI     N+  L   +  ++P   I   +EK     +   + C
Sbjct: 11  FFQFTRERGYAKKERSNLISPYFNNEFNLSAGHQYVIP---ILQNEEKEELIKIAINEIC 67

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEM--LGNFSFGGYFKERAIQLAWDL--LTKEFDLDQR 123
           +R      DL+ +G +N H   FEM  +G F +  + KE+ + +  D+  L +    D  
Sbjct: 68  IR----RIDLEKLGASNHHLLMFEMGVMGVFGYIDHIKEQLLSILRDVIDLIELLGFDMN 123

Query: 124 RLYITVYDEDEEAFKLWKKIS------------GLSADKIIRITTNDNF-WSMAETGPCG 170
           ++Y +V    E A  L KK              G+    I++     NF +S     P G
Sbjct: 124 QIYFSV---SEGASVLHKKYPADTLSYECLLHHGIRPLNIVKTKGRQNFIFSNGVGRPAG 180

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
              EIF+ +GE         +E     I I+  +F + +         +  M+I  G G 
Sbjct: 181 NSIEIFYKRGEDF-------TEIAS--INIYKYLFSEGKLHP------MTNMAIGGGFGF 225

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTG-----MKYEGNNIVNHRVIVDHLRSSSFL 285
           +R+  +L      +D   F      SEQ+       M+Y  N    +R I++ +++  F+
Sbjct: 226 DRITYLLNGYNRVFDTPPFSLF---SEQIKDLFRNEMEYRLNQDKINR-ILELIKTLVFI 281

Query: 286 IADGILPANEGRGYVLR 302
             DG  P N   G +++
Sbjct: 282 ELDGQKPDNSPHGKIMK 298


>gi|168188008|ref|ZP_02622643.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294168|gb|EDS76301.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 637

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 20/180 (11%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR-QLSINHSATHLLHHALSTILG 602
           T ++KKA G  ++    E   +  E S +    ++++  + ++ H+A+H+L  A+  +  
Sbjct: 29  TSLRKKALGAKINGEKAELMDVINEDSTLEIFTFEDQEGKDTLRHTASHILAQAVKRLYP 88

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                 G  I  +G  +D       T   L+ IE  +N I+ +NL +     +REDAI  
Sbjct: 89  EVKLAIGPSIE-NGFYYDFDAEFSFTPEILEKIEKEMNKIVKENLQLKKFTKSREDAIE- 146

Query: 663 GAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                   + N+  +V  +E          YE G      LC G HV ST E+  + ++S
Sbjct: 147 -----FMKERNEDYKVELIEDLPEDAVISFYEQGDF--VDLCAGPHVPSTKEVKAIKLLS 199


>gi|323692417|ref|ZP_08106653.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503557|gb|EGB19383.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 13/126 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ +L  IE  +  II
Sbjct: 70  ALRHTASHVMAQAVKRLYPDTKLAIGPSIA-DGFYYDVDPATPLTAEDLPKIETEMKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGV------HSSALCGG 696
            + L +    ++RE+AI     AL+  K    +V ++    ED  +        + LC G
Sbjct: 129 KEGLALERFTLSREEAI-----ALMKEKEEPYKVELIEDLPEDAEISFYRQGEFTDLCAG 183

Query: 697 THVSST 702
            H+ +T
Sbjct: 184 PHLMNT 189


>gi|50086067|ref|YP_047577.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|73919764|sp|Q6F860|SYT_ACIAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49532043|emb|CAG69755.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   KP T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPDVQMVIGPVIE-EGFYYDIFSPKPFTLDDMAAIEARMKQLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  RE  I        G  Y  R+     E    G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPREQVIQEFTTR--GETYKLRLIDDMPEETQMGLYYHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T     L     + I     R +A   Q  R +     +K K LA+++K
Sbjct: 188 NTK---FLKNFKLTKISGAYWRGDAKNEQLQRIYGTAWSDK-KELAAYIK 233


>gi|302339715|ref|YP_003804921.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636900|gb|ADK82327.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 585

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           Q  +   I HS  H++  A+  +        G  I  +G  +D    KP+ + +L+ I  
Sbjct: 8   QEEKLHRIRHSMAHVMAEAVVDLFPGTKVAIGPAIE-NGFYYDFDFPKPLANDDLEKISA 66

Query: 638 NVNDIIAQNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRVVSVEYEDGGVHS----S 691
            + DII    P   ++++RE+A  + SG     G +Y   +     E E+  ++S    +
Sbjct: 67  KMKDIIKGKHPFQRKVISREEAEKLFSGK----GEQYKVELLKAIPEGEEVSLYSQDSFT 122

Query: 692 ALCGGTHVSSTGEI 705
            LC G HV +T ++
Sbjct: 123 DLCRGPHVENTADL 136


>gi|296331396|ref|ZP_06873868.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305676383|ref|YP_003868055.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151511|gb|EFG92388.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414627|gb|ADM39746.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 638

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E+S+V T+D Q   Q+ + H++ H+L  A+  + G  VS     +  DG  +D+   + 
Sbjct: 58  AELSIV-TLDSQEGLQV-LRHTSAHVLAQAVKRLYGE-VSLGIGPVIEDGFYYDMKLEQS 114

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVE- 682
           +TS +L++IE  + +II +NL +    ++ E+A    A            D  R   +  
Sbjct: 115 LTSGDLEAIEKEMKNIINENLEIKRIEVSYEEAEELFAKKGEPFKLEMLKDIPRGEDITL 174

Query: 683 YEDGGVHSSALCGGTHVSSTGEI 705
           Y+ G      LC G H+ STG I
Sbjct: 175 YQQGEF--VDLCRGPHLPSTGMI 195


>gi|269925242|ref|YP_003321865.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788902|gb|ACZ41043.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 596

 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA H++  A+  +        G  I  +G  +D    +PIT  +   IE+ +  +I
Sbjct: 26  TMRHSAAHVMAAAVLQMFPDAKFGIGPAIE-NGFYYDFELPRPITPEDFPEIEERMRQLI 84

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGT 697
            ++ P +   ++R+ A            Y  ++ ++    ED  +      H + LC G 
Sbjct: 85  EEDHPFIREEISRQQA----KEMFRDQPY--KLEIIDDLPEDAVISIYKMAHFTDLCRGP 138

Query: 698 HVSSTGEIMLLYIVSESS 715
           HV STG+I    ++S +S
Sbjct: 139 HVESTGKIGPFKLLSVAS 156


>gi|260655005|ref|ZP_05860493.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630320|gb|EEX48514.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 623

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 20/128 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HLL  A++ +    V   G  I  DG  +D+   +PI+ ++L  IE  +  I+ 
Sbjct: 54  IRHSSAHLLADAVTRLFPGAVPAIGPVIK-DGFYYDIQFPQPISESDLPRIEKEMQRIVK 112

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----------VSVEYEDGGVHSSALC 694
           + +P + RI     ++    A  L  +  D  +V          V+V ++D  V    LC
Sbjct: 113 KCVP-LERI-----SVTVPEAIQLFKERKDPYKVEILEGVTDPQVNVYWQDTYV---DLC 163

Query: 695 GGTHVSST 702
            G HV +T
Sbjct: 164 RGPHVPNT 171


>gi|222528807|ref|YP_002572689.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455654|gb|ACM59916.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 647

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 24/192 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II ++
Sbjct: 75  HTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDIEESITREILEKIEEEMQKIIKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTHV 699
           L +    ++RE+AI      +     N +V +++ +  +G + S         LC G H+
Sbjct: 135 LKIERFELSREEAI----KLMQQRGENYKVELIN-DIPEGEIISFYRQGEFVDLCTGPHL 189

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            STG +    ++S +       S    ++RI  I+ ++ +S L   DE LK L    K  
Sbjct: 190 PSTGRVKAFKLLSVAGAYWRGNSKNKMLQRIYGISFEK-KSEL---DEYLKKLEE-AKKR 244

Query: 753 QGNVVGRVEEIW 764
             N +GR  EI+
Sbjct: 245 DHNRIGRELEIF 256


>gi|48477666|ref|YP_023372.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430314|gb|AAT43179.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 710

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H+L +A+  +  +    N S    +G  +D    +PI++ +   IED + DII 
Sbjct: 108 LRHSAAHVLANAVVELYNA--LPNTSNENQEGFYYDFD-MQPISTDDFPKIEDKMKDIID 164

Query: 645 QNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+ +    M ++D +           K N      +  Y +G  +    C G HV STG
Sbjct: 165 KNIKIEKYTMKKDDILNLFKNNPYKIDKINKNADDDATVYREGDYYE--FCRGPHVPSTG 222

Query: 704 EIMLLYIVSESS 715
            I    ++S +S
Sbjct: 223 FIKAFKLLSIAS 234


>gi|330836194|ref|YP_004410835.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
 gi|329748097|gb|AEC01453.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
          Length = 588

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +  +     G  I  +G  +D    +P+   +L+ I + +  IIA
Sbjct: 20  IRHSMAHVMAEAVLQMFPTAQIAIGPVIE-NGFYYDFDLPRPLVKDDLEEITERMKKIIA 78

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHVSS 701
           ++ P +  +++R++A    +      +  D +     VS+ Y+ GG     LC G HV+S
Sbjct: 79  EDKPFIRTVVSRDEARRRFSDQKYKVELLDAIPADEDVSL-YDQGGFID--LCRGPHVAS 135

Query: 702 TGEI 705
           T E+
Sbjct: 136 TKEL 139


>gi|123884206|sp|Q08B09|AASDA_XENLA RecName: Full=Alanyl-tRNA editing protein Aarsd1-A; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein
           1-A
 gi|115529163|gb|AAI24926.1| Aarsd1-a protein [Xenopus laevis]
          Length = 412

 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 17/260 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+   T  + E GGQ  D G  IG+   L++       +G    H +     L     ++
Sbjct: 42  VLLKDTVLFPEGGGQPDDRG-FIGEVPVLRVI-----RQGPDAVHFVASP--LDPATEVL 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID+  R      HS  HL+     ++ G   +          +  D   +  +T+ +L
Sbjct: 94  VKIDWNRRFDHMQQHSGQHLVTAIADSLYGFKTTSWDLGRQRSVIELD---TPLVTTEQL 150

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSS 691
           ++IE   N  I +++PV  R++  +D       +  L   +   VR++ +E  D      
Sbjct: 151 EAIEKIANQKIREHVPVHVRLITVDDPEFDMVRSRGLPDDHAGPVRIIDIEGVDAN---- 206

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            +C GTHV +  ++ ++ I+     +     +  ++G+R   ++       K+L S LK 
Sbjct: 207 -MCCGTHVRNLSDLQMIKILGTEKGKKNKTNLIFLSGERVLKYVSRSYNTEKTLTSLLKN 265

Query: 752 SQGNVVGRVEEIWEEYRKLQ 771
                +  V+++ +  + LQ
Sbjct: 266 GPEEHIEAVDKLQKSVKALQ 285


>gi|269860011|ref|XP_002649729.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|263511674|sp|B7XIA1|SYTC_ENTBH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220066924|gb|EED44394.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 634

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L +AL  +    +  NG  +  +G  +D+   +PI   +   IE  +  II +N
Sbjct: 73  HSSAHILGNALVNLYQCKLV-NGPALD-EGFYYDIDIERPIREEDFADIEKEMQRIINKN 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +    +++ ++D +           + + +   ++SV Y D       +C G H+ STG 
Sbjct: 131 IDFRKKMIKKDDLLKMYKDNDYKVHFINNIPDNLISVYYND---EFYDMCQGPHIQSTGL 187

Query: 705 IMLLYIVSESS 715
           +    I+  SS
Sbjct: 188 VKAFKILKSSS 198


>gi|262394073|ref|YP_003285927.1| alanyl-tRNA synthetase domain protein [Vibrio sp. Ex25]
 gi|262337667|gb|ACY51462.1| alanyl-tRNA synthetase domain protein [Vibrio sp. Ex25]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 44/225 (19%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KVE+  DQT F+AE+GGQ  D G    +GI + I     +  G+ + + +      
Sbjct: 22  VDGNKVEL--DQTIFFAESGGQESDKGTI--NGIPVLIA----QKLGVRLIYTLESSPNF 73

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALS------TILGSHVSQNGSCITPDGLRF 619
               ++   ID++ R  L   H A  ++             +G+H+S+N S       R 
Sbjct: 74  TLGDAVTTCIDWKRRYALMKLHFAAEVVLEMFYQRREGIVKIGAHISENKS-------RI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK+IE +V D+I  +  +++   ++E             +Y    RV 
Sbjct: 127 DFEWSESIGPL-LKAIETDVQDLINSDSVIISDFSDQESE----------RRY---WRV- 171

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                DG   +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 172 -----DG--FAQVPCGGTHLKRTSEVGQIQL-KRKNIGKGKERVE 208


>gi|268608298|ref|ZP_06142025.1| threonyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 646

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H+L  A+  +  +     G  I  +G  +D    KP T AEL+ IE  +  I+ ++
Sbjct: 73  HTASHILAQAVKRLYPNTKLAIGPAID-NGFYYDFDLEKPFTPAELEKIEAEMKKIVKED 131

Query: 647 LPVVTRIMNREDAIA------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           L +    ++  DAIA            L  ++ D+   +S  Y+ G    + LC G H+ 
Sbjct: 132 LALEQFELSPADAIAKLKEMDEPYKVELCEEHADKGEPISF-YKQGEF--TDLCAGPHLM 188

Query: 701 STGEIMLLYIVS 712
           +T  +    ++S
Sbjct: 189 TTAPVKAFKLLS 200


>gi|167907142|ref|ZP_02494347.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
          Length = 670

 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  I  +     G  I  DG  +D+ + +  T  ++ +IE  + ++IA
Sbjct: 72  IRHSCAHLLGHAVKQIYPTAKMVIGPVID-DGFFYDIAYERAFTPEDVAAIEQRMKELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYEDGGVHSSA----LCGGTH 698
            +  V+ ++  R  AI     A    + N ++R+++   + +  G++       +C G H
Sbjct: 131 LDYNVIKKMTPRAKAI----EAFHSREENYKLRLIADMPDVQAVGLYHHQEYVDMCRGPH 186

Query: 699 VSST 702
           V +T
Sbjct: 187 VPNT 190


>gi|291527690|emb|CBK93276.1| Alanyl-tRNA synthetase [Eubacterium rectale M104/1]
          Length = 424

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 159/407 (39%), Gaps = 73/407 (17%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG---------CAIGDGIRLQITDV------------- 546
           ++ +++ +QT F+ E GGQ  D G           I +G+     D+             
Sbjct: 34  KQFDIILNQTLFFPEEGGQSPDMGILGGYRVVDVQIKNGVITHTVDISADDCCIMGKEEA 93

Query: 547 --QKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL----LHHALS- 598
             +KK +G I       E+  +   + +   ID+Q+R      HS  H+    +H     
Sbjct: 94  QTEKKTDGQITGMECASEKVEIAAGVHVHGKIDWQHRFYNMQQHSGEHIFSGIVHRRFGF 153

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G H+S   S +T D        S  I+   +  +E  VN  I++N+P+      R++
Sbjct: 154 ENVGFHLSD--SVVTMD-------FSGVISPENIAEVEHEVNVAISKNIPIEVTYPPRDE 204

Query: 659 AIASGAAALLGTKYNDR------VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                   L   +Y  +      VR+V+V   D        C   HV  TGEI +L +++
Sbjct: 205 --------LAQLEYRSKIEIEGQVRIVTVPGYD-----VCACCAPHVKRTGEIGMLKVMN 251

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--WEEYRKL 770
             + + G+ RI  + G RA      + + +  L      +Q  +V  V ++    +  K 
Sbjct: 252 YQNYKGGV-RISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKS 310

Query: 771 QLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +L  AK   L   V +L     AD +        +D+   ++ ++ L +K  SG      
Sbjct: 311 ELGTAKSALLDYKVAELP----ADTDNAVLFEDGIDTNTARNCVNGLVEKY-SGFSAFFT 365

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            + E   S +I       +   A    +L A+      GGG+P M Q
Sbjct: 366 GNDEAGYSFIIGSKNADCNTVAAALRNKLGAR------GGGKPVMVQ 406


>gi|255659698|ref|ZP_05405107.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260848272|gb|EEX68279.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 16/149 (10%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           LT D ++ R  ++ H+A+H+L  A+  +   ++V         +G  +D    + +T A+
Sbjct: 60  LTFDDEDGR-WALRHTASHILAQAVKRLYKAANVRLAIGPAIDNGFYYDFDIDRQLTEAD 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--------VEY 683
           L  IE  +  I+ +NL +  + ++RE+A+        G  Y  +V +++          Y
Sbjct: 119 LADIEKEMKKIVKENLKLERKEVSREEALQFFEEK--GETY--KVELINDLPEGEKITMY 174

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             G    + LC G HV STG++  L ++S
Sbjct: 175 TQGEF--TDLCAGPHVVSTGKVKALKLMS 201


>gi|284992198|ref|YP_003410752.1| Threonyl/alanyl tRNA synthetase SAD [Geodermatophilus obscurus DSM
           43160]
 gi|284065443|gb|ADB76381.1| Threonyl/alanyl tRNA synthetase SAD [Geodermatophilus obscurus DSM
           43160]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 20/218 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV D++ FY   GGQ  D G  +  G+R +I   +K  E   +    VE   +    + V
Sbjct: 37  VVLDRSAFYPGGGGQPPDEGVLLWGGVRTRIAGTRKGDELYLIP---VEGDPVPPPGTAV 93

Query: 573 L-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D + R  L   HS  H+L   +    G+ V+  G  + P   R D   ++    A+
Sbjct: 94  RGALDDERRTALMRTHSGLHVLTGVVLRDFGAKVT--GGNMEPLTARMDFDLAE--VPAD 149

Query: 632 LKS-IEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYED 685
            K  + + VN  IA +  +  R + R +A A       A  LL     + VR+V +   D
Sbjct: 150 FKDRVAEAVNAEIAADRRIEVRTLPRAEAYAIPDLIRTATDLLPPDI-EEVRIVDIVGLD 208

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    GGTHV+ST  +  + +V   +   G RR+
Sbjct: 209 LQAD-----GGTHVASTAMVGRVEVVKMENKGRGFRRL 241


>gi|116252274|ref|YP_768112.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|123261550|sp|Q1MGA7|SYT_RHIL3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115256922|emb|CAK08016.1| putative threonyl-tRNA synthetase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 661

 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFAKNEPFTLDDLPKIEKKMKEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N     ++ +R+   A    A  G +Y   +     E +D  ++       LC G H++
Sbjct: 132 RNAAFTKQVWSRDR--AKQVFADKGEQYKVELVDAIPEGQDLKIYYQGDWFDLCRGPHMA 189

Query: 701 STGEI 705
           STG+I
Sbjct: 190 STGQI 194


>gi|218899729|ref|YP_002448140.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228903093|ref|ZP_04067229.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228910399|ref|ZP_04074214.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|218543438|gb|ACK95832.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228849165|gb|EEM94004.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228856502|gb|EEN01026.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI---ASGAAALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|315924324|ref|ZP_07920547.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622395|gb|EFV02353.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 644

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA+H++  A+  +        G  +  +G  +DV     IT  +   IE  +  I+  +
Sbjct: 72  HSASHVMGQAIKRVWPDAQLTIGPAVD-NGFYYDVDLEHAITPDDYPIIEAEMKKIVKAD 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED------GGVHSSALCGGTHVS 700
            P+   + +RE+A+A         K      ++    ED      G    + LC G H+ 
Sbjct: 131 YPIEYTVKSREEALAWAEKEHETYK----TELIEALPEDETISFYGQGEWADLCAGPHIR 186

Query: 701 STGEIMLLYIVS 712
           STG+I    I+S
Sbjct: 187 STGQIKAFKIMS 198


>gi|302783999|ref|XP_002973772.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
 gi|300158810|gb|EFJ25432.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
          Length = 795

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L + H+  H++  A+ T+        G  I   G  +D    +P++  +LK I+  ++ I
Sbjct: 84  LRMRHTCAHVMAMAVQTLYPDAKVTIGPWIE-KGFYYDFDLKEPLSDKDLKKIKKEMDRI 142

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTH 698
           I +NLP+    ++RE+  A      +  KY     + ++   +     G     LC G H
Sbjct: 143 IGRNLPLRREEVSREE--AKDRIMSINEKYKLEILEDIKTEPITIYHIGNDWWDLCAGPH 200

Query: 699 VSSTGEI 705
           V  TG++
Sbjct: 201 VERTGQL 207


>gi|229099037|ref|ZP_04229971.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229118067|ref|ZP_04247426.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665290|gb|EEL20773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684265|gb|EEL38209.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|114706249|ref|ZP_01439151.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114538110|gb|EAU41232.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 670

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 14/141 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D     +L I H   H+L  A+  +        G  I  +G  +D     P T  +
Sbjct: 62  ILTRDDPRALEL-IRHDCAHVLAEAVQELWPGTQVTIGPVIE-NGFYYDFHRETPFTPED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSV--EYEDGGV 688
           L  IE  +++II +N P    + +R +     A  +  TK  N +V +V    E +D  +
Sbjct: 120 LPVIEKKMSEIIQRNRPFTKEVWSRNE-----AREVFETKGENFKVELVDAIPEDQDLKI 174

Query: 689 HSSA----LCGGTHVSSTGEI 705
           +       LC G H++STG+I
Sbjct: 175 YKQGEWFDLCRGPHMASTGQI 195


>gi|260891090|ref|ZP_05902353.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260859117|gb|EEX73617.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 636

 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  +     G  I  +G  +D    KP T  +L  IE+ +  I+ 
Sbjct: 71  IRHSAAHIMAQAVQRLFPNTKVTIGPVIE-NGFFYDFDPEKPFTEEDLAKIEEEMTKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---------LCG 695
           +N       M  E+A    A    G  Y  +V ++    ED G    +         LC 
Sbjct: 130 ENYEFKRSEMTAEEAKKFFAEK--GETY--KVEII----EDLGADKVSIYQQGEFIDLCR 181

Query: 696 GTHVSSTGEIMLLYIVS 712
           GTH+ STG +    ++S
Sbjct: 182 GTHIPSTGYLKAFKLMS 198


>gi|327293520|ref|XP_003231456.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466084|gb|EGD91537.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 36/227 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA--EGIFVHHAIVERGILRTEM 569
           VV ++T F+ + GGQ  D G      G    +T V+  A  +G  +H             
Sbjct: 48  VVTEKTIFHPQGGGQPSDIGMITSPSGSSFTVTSVRMDALQDGQVLHFGRFGPSTFAPGE 107

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR-FDVTHSKPIT 628
           ++   ID + R   S  H+A H+L  A+  ++   V         DG      +H     
Sbjct: 108 TVQQEIDVEKRFLFSRLHTAGHVLGAAVKHLVEKDV---------DGFEELKASHFPDSA 158

Query: 629 SAELK---------SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDR 675
           + E +         SI+D VN+ IA  +PV     + +D  + G   L+         ++
Sbjct: 159 ACEFRGLIEGKWKPSIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLIPDPTLVPPGEK 218

Query: 676 VRVVSV----EYEDGGVH--SSALCGGTHVS----STGEIMLLYIVS 712
            RVV++     Y  GG H  S+ LCG T V     S G   + Y V+
Sbjct: 219 SRVVNIVGAEVYPCGGTHVDSTDLCGQTTVKKISRSKGTSRVSYTVA 265


>gi|255024324|ref|ZP_05296310.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S  +I  V  ++  ++  D  +L+  +D  + K   GI++L  +  +K   +  V  E +
Sbjct: 36  SPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAI 95

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              ++A  L +  A   GG GGG RP MAQ+GG N  +   A+  V++++K+
Sbjct: 96  KAGYHAGKLLKEVATRCGGNGGG-RPDMAQAGGKNPAELGAALDYVSTWVKE 146


>gi|163942310|ref|YP_001647194.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229013779|ref|ZP_04170907.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229062260|ref|ZP_04199581.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229135411|ref|ZP_04264199.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|163864507|gb|ABY45566.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648054|gb|EEL04101.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228716988|gb|EEL68669.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228747448|gb|EEL97323.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI---ASGAAALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|218296283|ref|ZP_03497039.1| Threonyl/alanyl tRNA synthetase SAD [Thermus aquaticus Y51MC23]
 gi|218243355|gb|EED09885.1| Threonyl/alanyl tRNA synthetase SAD [Thermus aquaticus Y51MC23]
          Length = 375

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 21/225 (9%)

Query: 502 VEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV--QKKAEGIFVH-- 556
           VE A S G+    V  +T FY E+GGQ  DTG   G    +Q+     ++KA G  VH  
Sbjct: 17  VERAWSDGKGHYAVLSETLFYPESGGQPADTGVLRGAFGEVQVLHAYEEEKAFGDVVHVL 76

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            A V +G       +   I++Q R +    H+A H+L  AL    G H       ++ D 
Sbjct: 77  SAPVPQG-----AEVEGEINWQRRFRHMQRHTAQHILSQALLRAGGYHT----VAVSLDS 127

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
               +  ++ +   +++  E      +  + PV    ++ E+   +        K   +V
Sbjct: 128 PLSTLDLAEEVEEEKVRQAEALAAFAVYADYPVEAFWVSEEE--LAHYPLRRPPKVQGKV 185

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           R+V +     G    A CGGTH+ ++ +   + +      + G R
Sbjct: 186 RLVRI-----GDFDLAACGGTHLKTSAQAGPIKVQKWERYKGGTR 225


>gi|254429307|ref|ZP_05043014.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195476|gb|EDX90435.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  IT +G  +D     P T  +LK+IE  + DI+ 
Sbjct: 72  IRHDAAHVMAEAVQELFPDTQVTIGPTIT-NGFYYDFHRDTPFTPDDLKTIEKRMQDIVR 130

Query: 645 QNLPVVTRIMNREDAIA 661
           +N  +   + +R++A+A
Sbjct: 131 RNEEIRREVWDRDEAVA 147


>gi|328867955|gb|EGG16336.1| putative alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 28/203 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVNDI 642
           I  +A H+L  A+ T+LG+ V+ +  C      R  V +   +  ++  +K IE   N+I
Sbjct: 8   ITDTACHILKGAVVTVLGTPVTASVECNNKVKGRLTVEYDSDVKPSDENVKRIEKEANNI 67

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALC 694
           +  NLP+    M+R++A      + +   Y             +  VE E+  ++    C
Sbjct: 68  VKANLPLKAFSMDRKEAETKYTESKVNNTYIYDKFPVPESVTTLTLVEIENWNINC---C 124

Query: 695 GGTHVSSTGEIMLLYIV--------SESSIRAGIRRIEAITGQRA---RSHLMGQDEKLK 743
              H+  TG+I  + I+         E  +R  I   EA+  ++A   +S L  +++K+K
Sbjct: 125 PAQHLEKTGDIGYIKIIGTNHRPQKKEFELRFEIVSKEAVEAEQAAQDKSRLE-KEKKIK 183

Query: 744 SLASFLKVSQGN---VVGRVEEI 763
                LK    N   V  RV EI
Sbjct: 184 DEQDRLKRESTNIELVTKRVMEI 206


>gi|167626332|ref|YP_001676832.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083609|sp|B0TY89|SYT_FRAP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167596333|gb|ABZ86331.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 635

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E+ L+ T D +    L   HS  HLL +A+  +  +     G  I  +G  +D +  + I
Sbjct: 56  ELRLITTKDTEGLEIL--RHSCAHLLANAVKELYPNTEVTIGPVID-NGFYYDFSFKETI 112

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE---- 682
             A+L +IE  + +I  +   +  +++++EDAIA   A   G  Y  D +  +  +    
Sbjct: 113 GEADLANIEKRMKEIAKKGSSISYKVVSKEDAIAFFKAQ--GENYKVDIIESIPADQQIK 170

Query: 683 -YEDGGVHSSALCGGTHVSSTGEI 705
            Y  G    S LC G HV ST  I
Sbjct: 171 IYTQGDF--SDLCRGPHVPSTAAI 192


>gi|134282011|ref|ZP_01768717.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134246540|gb|EBA46628.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 681

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 11/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  I  +     G  I  DG  +D+ + +  T  ++ +IE  + ++IA
Sbjct: 83  IRHSCAHLLGHAVKQIYPTAKMVIGPVID-DGFFYDIAYERAFTPEDVAAIEQRMKELIA 141

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYEDGGVHSSA----LCGGTH 698
            +  V+ ++  R  AI     A    + N ++R+++   + +  G++       +C G H
Sbjct: 142 LDYNVIKKMTPRAKAI----EAFHSREENYKLRLIADMPDVQAVGLYHHQEYVDMCRGPH 197

Query: 699 VSST 702
           V +T
Sbjct: 198 VPNT 201


>gi|281420813|ref|ZP_06251812.1| alpha-amylase family protein [Prevotella copri DSM 18205]
 gi|281405105|gb|EFB35785.1| alpha-amylase family protein [Prevotella copri DSM 18205]
          Length = 730

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ++  ++ +    H+A HLL+  +  + G   S+N            V   KP T  E 
Sbjct: 579 IILNEHHKEEFPPAHTAEHLLNQLMVRLFGCDRSKNAHIERKKSKMTFVVDHKP-TRQEE 637

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           K IE  +N +I  ++PV    ++R+   A+     L    ++ +R+V +     G +   
Sbjct: 638 KEIETEMNRLIELDMPVTYEFVDRDHIPANVKLDRLPDDASETLRLVRI-----GDYDVC 692

Query: 693 LCGGTHVSSTGEI 705
            C G HV ST +I
Sbjct: 693 PCIGKHVRSTAQI 705


>gi|229169303|ref|ZP_04297013.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614066|gb|EEK71181.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI---ASGAAALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRTEALRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|218438366|ref|YP_002376695.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218171094|gb|ACK69827.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 608

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 28/135 (20%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G   T +G  +D    +P T  +LK+I+  +  II 
Sbjct: 30  IRHTTSHIMAMAVQQLFPKAQVTIGPW-TENGFYYDFDTPEPFTEEDLKAIKKEMVKIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DG----------GVHS 690
           + LPV+   + RE+A               R++ ++  Y+    +G          G   
Sbjct: 89  RKLPVIREEVTREEA-------------ERRIQAINEPYKLEILEGIQEPITIYHLGDKW 135

Query: 691 SALCGGTHVSSTGEI 705
             LC G HV +T EI
Sbjct: 136 WDLCAGPHVETTAEI 150


>gi|228993303|ref|ZP_04153219.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766371|gb|EEM15014.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T+D ++   + + HS  HLL  AL   L   V      +  +G  +D+   + IT  +
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKR-LYKDVKLGIGPVIENGFYYDIDMEEAITVED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYEDG 686
              IE  +  I+ +NL +V   + R +A+         L     ND     ++S+ YE G
Sbjct: 120 FPKIEKEMQKIVNENLEIVRHEVPRAEALRRYEEIGDELKLELINDLPEDAIISI-YEQG 178

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
             +   LC G H+ STG+I +  ++S
Sbjct: 179 EFYD--LCRGVHLPSTGKIKMFKLLS 202


>gi|226324523|ref|ZP_03800041.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
 gi|225206971|gb|EEG89325.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 17/138 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H++  A+  +        G  I  DG  +D+    P+ + +L+ IE  +  I+
Sbjct: 69  AFRHTTSHIMAQAIKRLYPDTKLAIGPSIE-DGFYYDIDRETPLVAEDLEKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGV------HSSALC 694
            ++LP+    M R +AIA         K  D   +V ++    ED  +        + LC
Sbjct: 128 KEDLPIKQYTMPRAEAIAY-------FKEKDEPYKVELIEDLPEDSVISFYSQGEFTDLC 180

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G H+ ST  +    + S
Sbjct: 181 AGPHLMSTKPVKAFKLTS 198


>gi|188577599|ref|YP_001914528.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522051|gb|ACD59996.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 649

 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 86  IRHSCAHLVGHAVKQLYPEVKMVIGPVIA-EGFYYDIYSERPFTPEDMAAIEQRMQALIA 144

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALCGG 696
           Q+  V+ ++  R + I     A  G +Y        +D +  + + Y    V    +C G
Sbjct: 145 QDYDVIKKVTPRAEVIE--VFAQRGEEYKLRLIDDMSDDITAMGLYYHQEYVD---MCRG 199

Query: 697 THVSST 702
            HV +T
Sbjct: 200 PHVPNT 205


>gi|218530550|ref|YP_002421366.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218522853|gb|ACK83438.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  + +II+
Sbjct: 71  IRHDCAHVLAEAVQALWPGTQVTIGPVIE-NGFYYDFAKDEPFTPEDFPKIEAKMREIIS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ P    +  R+D  A  A    G  Y   +       ED  ++       LC G H++
Sbjct: 130 RDAPFTKEVWKRDDVKALFAEK--GESYKVELVDAIPPGEDLKIYRQGEWFDLCRGPHMT 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKV 192


>gi|218295928|ref|ZP_03496708.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218243666|gb|EED10194.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 660

 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 17/138 (12%)

Query: 582 QLSINHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           QL   H+  H+L  A+             V      +   G  +D+   +P++  +L  I
Sbjct: 67  QLLFRHTLAHVLAQAVKEFFREKGYDPESVRLGVGPVIEKGFYYDIDAPEPLSDEDLPQI 126

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE--------DGG 687
           E+ + +I+ ++LP+   ++ RE A+A          Y   + +   E E        D  
Sbjct: 127 EEKMREILRRDLPLKRYVLPREAALARYQGK---DPYKTELILDLPEGEEISFYQQGDEA 183

Query: 688 VHSSALCGGTHVSSTGEI 705
              + LC G HV STG I
Sbjct: 184 FGFTDLCRGPHVPSTGRI 201


>gi|320547252|ref|ZP_08041545.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448140|gb|EFW88890.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 697

 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 16/149 (10%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSA 630
           V+T D+++   + + HSA HL   A   +        G  I  +G  +D  + S  IT  
Sbjct: 108 VVTPDHEDALSV-LRHSAAHLFAQAAKRLFPDLCLGVGPAIE-NGFYYDTDNKSGQITDE 165

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG--- 687
           +L  IE+ +  I+ +NLP V     +E +I           Y  ++ ++    ED G   
Sbjct: 166 DLPRIEEEMKKIVKENLPCV----RKEISIEEARELFKNDPY--KLELIEEHGEDEGGLT 219

Query: 688 VHS----SALCGGTHVSSTGEIMLLYIVS 712
           V++    + LC G HV STG I + ++++
Sbjct: 220 VYTQGEFTDLCRGPHVPSTGRIQVFHLLN 248


>gi|166711588|ref|ZP_02242795.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 634

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQALIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALCGG 696
           Q+  V+ ++  R + I     A  G +Y        +D +  + + Y    V    +C G
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEYKLRLIDDMSDDITAMGLYYHQEYVD---MCRG 184

Query: 697 THVSST 702
            HV +T
Sbjct: 185 PHVPNT 190


>gi|58582810|ref|YP_201826.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427404|gb|AAW76441.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 671

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 108 IRHSCAHLVGHAVKQLYPEVKMVIGPVIA-EGFYYDIYSERPFTPEDMAAIEQRMQALIA 166

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALCGG 696
           Q+  V+ ++  R + I     A  G +Y        +D +  + + Y    V    +C G
Sbjct: 167 QDYDVIKKVTPRAEVIE--VFAQRGEEYKLRLIDDMSDDITAMGLYYHQEYVD---MCRG 221

Query: 697 THVSST 702
            HV +T
Sbjct: 222 PHVPNT 227


>gi|294670480|ref|ZP_06735360.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307759|gb|EFE49002.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  +D+   K
Sbjct: 52  TEDSTVQIITPKDQEGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEK 110

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P T  ++ +IE  + ++IAQ+  V+  +  R + I        G +Y  R+     E E 
Sbjct: 111 PFTPEDVAAIEARMKELIAQDYDVIKIMTPRAETIKIFQDR--GEEYKLRLIEDMPEVEA 168

Query: 686 GGVHSSA----LCGGTHVSST 702
            G++       +C G HV +T
Sbjct: 169 MGMYYHQEYVDMCRGPHVPNT 189


>gi|300023294|ref|YP_003755905.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525115|gb|ADJ23584.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 650

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 21/132 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+ ++        G  I  +G  +D    +P    ++  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQSLWPGTQVTIGPVID-NGFFYDFAKQQPFEPEDIPKIEKKMGEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSA----L 693
           +N        +R+DA            + D+  V  +E        ED  ++       L
Sbjct: 132 KNAAFTKEFWSRDDA---------KKFFRDKGEVFKIELVDAIPAGEDLKIYKQGEWLDL 182

Query: 694 CGGTHVSSTGEI 705
           C G H++STG+I
Sbjct: 183 CRGPHMTSTGQI 194


>gi|229196601|ref|ZP_04323345.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228586957|gb|EEK45031.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 20/142 (14%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T+D     +++  HSA H+L  A+  I G+ V+     +  +G  +D+     +   +
Sbjct: 63  IITLDSNEGVEIA-RHSAAHILAQAIKRIYGN-VNLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  II +N+ +    ++RE+      AA L  + NDR+++  +E         
Sbjct: 121 LREIEKEMKKIINENIKIERVEVSREE------AAKLFQEMNDRLKLELLEAIPSEESVT 174

Query: 683 -YEDGGVHSSALCGGTHVSSTG 703
            Y+ G      LC G H+ STG
Sbjct: 175 LYKQGEF--VDLCRGPHLPSTG 194


>gi|254561516|ref|YP_003068611.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254268794|emb|CAX24755.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  + +II+
Sbjct: 71  IRHDCAHVLAEAVQALWPGTQVTIGPVIE-NGFYYDFAKDEPFTPEDFPKIEAKMREIIS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ P    +  R+D  A  A    G  Y   +       ED  ++       LC G H++
Sbjct: 130 RDAPFTKEVWKRDDVKALFAEK--GESYKVELVDAIPPGEDLKIYRQGEWFDLCRGPHMT 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKV 192


>gi|332187352|ref|ZP_08389090.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332012513|gb|EGI54580.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 664

 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 25/194 (12%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-----TEMSLVLTIDYQN 579
           G    D   AIG G  L    +  + +G         R I+R       ++LV   D  +
Sbjct: 17  GTTPADIAAAIGSG--LAKAAIAARVDGEL-------RDIMRPFEGDAALALVTAKDEAD 67

Query: 580 RRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIED 637
             +L+  H   H+L  A+  +  G+ ++     +T DG  +D     +P T  +L +IE 
Sbjct: 68  ALELA-RHDYAHVLAEAVQALFPGTQIT--FGPVTDDGFYYDFAPKDRPFTEEDLPAIEA 124

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAA------ALLGTKYNDRVRVVSVEYEDGGVHSS 691
            +  IIA++ P++  +  RE  I    A      A    +  D   +       G     
Sbjct: 125 EMRKIIAKDEPLIREVWTREQLIERWKAQGESFKAEWAAELPDDEELTVYRAGKGEDAWL 184

Query: 692 ALCGGTHVSSTGEI 705
            +C G H++STG++
Sbjct: 185 DMCRGPHLASTGKL 198


>gi|240138908|ref|YP_002963383.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240008880|gb|ACS40106.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  + +II+
Sbjct: 71  IRHDCAHVLAEAVQALWPGTQVTIGPVIE-NGFYYDFAKDEPFTPEDFPKIEAKMREIIS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ P    +  R+D  A  A    G  Y   +       ED  ++       LC G H++
Sbjct: 130 RDAPFTKEVWKRDDVKALFAEK--GESYKVELVDAIPPGEDLKIYRQGEWFDLCRGPHMT 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKV 192


>gi|114764320|ref|ZP_01443548.1| hypothetical protein 1100011001356_R2601_25346 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543268|gb|EAU46285.1| hypothetical protein R2601_25346 [Roseovarius sp. HTCC2601]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 21/205 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI-TDVQKKAEG-IFVHHAIVERGILR 566
           Q+  +V D+T F+   GGQ GD+G     G  L I T VQ + +  I V    +      
Sbjct: 24  QEGGIVLDRTVFFPRGGGQPGDSGRLDWHGRSLSIATAVQGERDAVILVPAEPLPLPAPG 83

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           T +S  L  D++ R +    HSA HL    LS ++   V+  G  I+    R D   + P
Sbjct: 84  TVVSQRL--DWERRHRHMRVHSALHL----LSVVVPLPVT--GGNISAGHGRLDF--ATP 133

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYNDRVRVVS 680
                 ++IE+ +N  + ++L +    +  E+A+     AL+ T      +    VR+V 
Sbjct: 134 DLPDSREAIEEMLNGFVERDLAISADWV--EEAVLDANPALVRTMTVQPPRGQGAVRLVR 191

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEI 705
           +   +  +     CGGTHV+ TGEI
Sbjct: 192 IGTGEEQIDLQP-CGGTHVARTGEI 215


>gi|55981844|ref|YP_145141.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|7388285|sp|P56881|SYT_THET8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6689424|emb|CAB65483.1| threonyl-tRNA synthetase [Thermus thermophilus]
 gi|55773257|dbj|BAD71698.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 659

 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 582 QLSINHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           Q    H+  H+L  A+             V      +   G  +D+   +P++  +L +I
Sbjct: 67  QTLFRHTLAHVLAQAVKEFFREKGYDPESVRLGVGPVIEKGFYYDIEAPEPLSDEDLPAI 126

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E  + +I+ ++LP+   +++RE+A+A           L  +  +   +   +  D     
Sbjct: 127 EAKMREILKRDLPLRRFVLSREEALARYRGKDPYKTELVLEIPEGEEISFYQQGDEAYGF 186

Query: 691 SALCGGTHVSSTGEI 705
           + LC G HV STG I
Sbjct: 187 TDLCRGPHVPSTGRI 201


>gi|152976959|ref|YP_001376476.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025711|gb|ABS23481.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 643

 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 21/139 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  AL   L   V      +  +G  +D+   + IT  +   IE  +  I+ 
Sbjct: 74  LRHSTAHLLAQALKR-LYKDVKLGIGPVIENGFYYDIDMEEAITVEDFPKIEKEMQKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-----------VVSVEYEDGGVHSSAL 693
           +NL +V   + R +A+          + ND ++           V+S+ YE G      L
Sbjct: 133 ENLEIVRHEVPRAEALRR------YEEINDELKLELINDLPEDAVISI-YEQGEFFD--L 183

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G H+ STG+I +  ++S
Sbjct: 184 CRGVHLPSTGKIKVFKLLS 202


>gi|315425470|dbj|BAJ47133.1| threonyl/alanyl tRNA synthetase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 18/216 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E+VE  VSG  V  V D+T F+   GG + D G     G+      V +  E  F    
Sbjct: 21  AEVVE--VSGDCV--VLDRTVFHPRGGGLVSDVGFLRFGGV------VSRVVEAFFTDGG 70

Query: 559 IVER---GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           +  R   G+ R    +   +D++ R ++   H+  H+L   +    G+ ++  G+ I+ D
Sbjct: 71  VAHRLEGGVPRVGEVVEGVVDWEKRYRVMRMHTGLHVLAATMVEKTGALIT--GNNISYD 128

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G R D +  +      ++ +    N  +A++ PV    + RE  +++     L  +    
Sbjct: 129 GGRVDFS-LEMFDRGVIEDVVQETNRRLAEDHPVKIYYLEREKVLSTPGLVKLANRLPPD 187

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           V V+ +  E  G+   A  GG HV +T E+  + +V
Sbjct: 188 VPVLRI-VEIVGLDVQA-DGGPHVGNTVEVGRINVV 221


>gi|285017864|ref|YP_003375575.1| threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473082|emb|CBA15587.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 634

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+  ++P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEAKMVIGPVIA-EGFYYDIYSARPFTPEDMAAIERRMQELIA 129

Query: 645 QNLPVVTRIMNREDAI 660
           Q+  V+ ++  R + I
Sbjct: 130 QDYDVIKKVTPRAEVI 145


>gi|54020620|ref|YP_116116.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|53987793|gb|AAV27994.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 579

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L IDY+      +NHS++HLL  A+  IL   V      +  DG  +D   S  I+ ++ 
Sbjct: 3   LKIDYK------LNHSSSHLLALAIK-ILYPDVKFGIGPVFDDGFYYDFDLSVSISQSDF 55

Query: 633 KSIEDNVNDIIAQNLPVVT---RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             IE  +  ++++NL +V    + ++ ++ I          K  +++   S+      + 
Sbjct: 56  PKIEKLMKKLVSKNLKIVETDGKNLDFQNQIYKAELKNDLEKKGEKITYFSIVDSKNNIL 115

Query: 690 SSALCGGTHVSSTGEI 705
              LC G H+ S G+I
Sbjct: 116 FEDLCYGNHLESLGKI 131


>gi|238021043|ref|ZP_04601469.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
 gi|237868023|gb|EEP69029.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  S     G  I  DG  +D+   KP T  ++ +IE  + ++I 
Sbjct: 73  IRHSCAHLVGHAVKQLFPSVKMVIGPVIE-DGFYYDIFSEKPFTPEDIAAIETRMKELIN 131

Query: 645 QNLPVVTRIMNREDAI------ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           Q+  V+ ++  R + I             L     D +  + + Y    V    +C G H
Sbjct: 132 QDYDVIKKMTPRAEVIEIFKQRGEDYKLRLIDDMADDITAMGMYYHQEYVD---MCRGPH 188

Query: 699 VSST 702
           V +T
Sbjct: 189 VPNT 192


>gi|171780136|ref|ZP_02921040.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281484|gb|EDT46919.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 697

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      V+T D+++   + + HSA HL   A   +        G  I  +G 
Sbjct: 99  AITEDGSIE-----VVTPDHEDALGI-LRHSAAHLFAQAAKRLFPDLCLGVGPAIE-NGF 151

Query: 618 RFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  + S  IT  +L  IE+ +  I+ +NLP V     +E +I           Y  ++
Sbjct: 152 YYDTDNKSGQITDEDLPRIEEEMKKIVKENLPCV----RKEISIEEARELFKNDPY--KL 205

Query: 677 RVVSVEYEDGG---VHS----SALCGGTHVSSTGEIMLLYIVS 712
            ++    ED G   V++    + LC G HV STG I + ++++
Sbjct: 206 ELIEEHGEDEGGLTVYTQGEFTDLCRGPHVPSTGRIQVFHLLN 248


>gi|148654295|ref|YP_001274500.1| threonyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148566405|gb|ABQ88550.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Roseiflexus sp.
           RS-1]
          Length = 595

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 40/146 (27%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  I        G  I  DG  +D    +P+T  +L+ IE  +  IIA
Sbjct: 13  LRHSAAHVMAQAVLEIFPEGKIAIGPPIE-DGFYYDFDLPRPLTPDDLEEIEQRMRRIIA 71

Query: 645 QNLPVVTRIMNREDAIA-------------------------SGAAALLGTKYNDRVRVV 679
              P V R+++ ++A A                         SG++ ++ T  +D     
Sbjct: 72  GRHPFVYRVVDPDEARALFRDQPYKLELIEGLLHGQDEYGEQSGSSTVISTYKHD----- 126

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI 705
              +ED       LC G H+  TG+I
Sbjct: 127 --TFED-------LCRGPHLEHTGQI 143


>gi|28869575|ref|NP_792194.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970495|ref|ZP_03398622.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384174|ref|ZP_07232592.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302132643|ref|ZP_07258633.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|38258312|sp|Q883H9|SYT_PSESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28852817|gb|AAO55889.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924666|gb|EEB58234.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|330876789|gb|EGH10938.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331016139|gb|EGH96195.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDLAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVS--VEYEDGGVHSSA----LCGGT 697
           ++  V+ ++  R + I      +   ++ D ++R+V    + +  G++       +C G 
Sbjct: 130 KDYDVIKKVTPRAEVI-----EVFTARHEDYKLRLVEGMPDEQAMGLYYHEEYVDMCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|154502817|ref|ZP_02039877.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
 gi|153796700|gb|EDN79120.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
          Length = 642

 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  +  DG  +DV    P T+ +L+ IE  +  I+
Sbjct: 69  AFRHTASHIMAQAVKRLYPETKLAIGPSVA-DGFYYDVDRETPFTADDLEKIEKEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGT 697
            +NLP+      R +AI          +   +V ++    ED  +        + LC G 
Sbjct: 128 KENLPIEQFTKPRNEAIEY----FKEKEEPYKVELIEDLPEDETISFYSQGEFTDLCAGP 183

Query: 698 HVSSTGEIMLLYIVS 712
           H+ ST  +    + S
Sbjct: 184 HLMSTKYVKAFKLTS 198


>gi|289661762|ref|ZP_06483343.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 636

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++  IE  + ++IA
Sbjct: 73  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAVIEQRMQELIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSA----LCGGT 697
           Q+  V+ ++  R + I     A  G +Y  ++R++    ED    G++       +C G 
Sbjct: 132 QDYDVIKKVTPRAEVIE--VFAQRGEEY--KLRLIEDMSEDITAMGLYYHQEYVDMCRGP 187

Query: 698 HVSST 702
           HV +T
Sbjct: 188 HVPNT 192


>gi|288576250|ref|ZP_05978464.2| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288565905|gb|EFC87465.1| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  +D+   K
Sbjct: 58  TEDSAVQIITPKDQEGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEK 116

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P T  ++ +IE  + ++IAQ+  V+  +  R + I        G +Y  R+     E E 
Sbjct: 117 PFTPEDVAAIEARMKELIAQDYDVIKIMTPRAETIKIFQDR--GEEYKLRLIDDMPEVEA 174

Query: 686 GGVHSSA----LCGGTHVSST 702
            G++       +C G HV +T
Sbjct: 175 MGMYHHQEYVDMCRGPHVPNT 195


>gi|84624684|ref|YP_452056.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|73919845|sp|Q5GXY0|SYT_XANOR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123725509|sp|Q2P0Z5|SYT_XANOM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84368624|dbj|BAE69782.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQALIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALCGG 696
           Q+  V+ ++  R + I     A  G +Y        +D +  + + Y    V    +C G
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEYKLRLIDDMSDDITAMGLYYHQEYVD---MCRG 184

Query: 697 THVSST 702
            HV +T
Sbjct: 185 PHVPNT 190


>gi|325263795|ref|ZP_08130528.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324030833|gb|EGB92115.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 641

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++  A+  +        G  ++ DG  +D+    P+T  +L+ IE  +  I+ + 
Sbjct: 72  HTASHIMAQAVKRLYPDTRLAIGPSVS-DGFYYDIDRETPLTVEDLEKIEAEMKKIVKEA 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSA----LCGGTHVS 700
           LP+      R++AIA       G  Y  +V ++    +D  +  +S A    LC G H+ 
Sbjct: 131 LPIEQYTKPRQEAIAYFEEK--GEPY--KVELIEDLPDDAVISFYSQAEFTDLCAGPHLM 186

Query: 701 STGEIMLLYIVS 712
           +T  +    + S
Sbjct: 187 TTKPVKAFKLTS 198


>gi|219849385|ref|YP_002463818.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219543644|gb|ACL25382.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 594

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 22/149 (14%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D ++     + HS  H++  A+  I        G  I  +G  +D    +P+T  +L
Sbjct: 1   MPVDPKSDPYYRLRHSLAHVMAQAVLEIFPDAKIAIGPPIE-NGFYYDFDLPRPLTPEDL 59

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDA----------------IASGAAALLGTKYNDRV 676
             IE  +  IIA N P + R +  E+A                +A G      T + D  
Sbjct: 60  TEIEKRMKRIIAGNHPFIYREVTAEEARQIFANQPYKLELIEGLAKGLDEYGETHHGD-- 117

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            V+S   +D       LC G H++ TGEI
Sbjct: 118 TVISTYRQDT---FEDLCRGPHLNHTGEI 143


>gi|229019800|ref|ZP_04176603.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229026025|ref|ZP_04182408.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735241|gb|EEL85853.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741525|gb|EEL91722.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 645

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 8/146 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  HLL  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDG 686
           + K IE  +  I+ +NL +V   + R +A+      G    L    +     V   YE G
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEIGDELKLDLINDLPEDAVITIYEQG 180

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G H+ STG+I +  ++S
Sbjct: 181 EFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|291486342|dbj|BAI87417.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 638

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 17/147 (11%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E+S+V T+D Q   Q+ + H++ H+L  A+  + G  VS     +  DG  +D+   K 
Sbjct: 58  AELSIV-TLDSQEGLQV-LRHTSAHVLAQAVKRLYGE-VSLGVGPVIEDGFYYDMKLGKS 114

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--- 683
           + S +L++IE  + +II +NL  + RI      ++   A  L  + ++R+++  ++    
Sbjct: 115 LASGDLEAIEKEMKNIINENLE-IKRI-----EVSYEEADELFAQKDERLKLEILKDIPR 168

Query: 684 -EDGGVHSSA----LCGGTHVSSTGEI 705
            ED  ++       LC G H+ STG I
Sbjct: 169 GEDITLYQQGEFVDLCRGPHLPSTGMI 195


>gi|72080917|ref|YP_287975.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
 gi|71914041|gb|AAZ53952.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 579

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 10/136 (7%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L IDY+      +NHS++HLL  A+  IL   V      +  DG  +D   S  I+ ++ 
Sbjct: 3   LKIDYK------LNHSSSHLLALAIK-ILYPGVKFGIGPVFDDGFYYDFDFSVSISQSDF 55

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYNDRVRVVSVEYEDGGVH 689
             IE  +  ++++NL +V       D       A L +   K  +++   S+      + 
Sbjct: 56  PKIEKLMKKLVSKNLKIVETDGKNLDFQNQTYKAELKSDLEKKGEKITYFSIVDSKNNIL 115

Query: 690 SSALCGGTHVSSTGEI 705
              LC G H+ S G+I
Sbjct: 116 FEDLCYGNHLESLGKI 131


>gi|330428483|gb|AEC19817.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+ ++        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKSLFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLEAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           ++  V      R+DA+       +G  Y   + + S+        Y +G      LC G 
Sbjct: 135 KDEVVTREEWLRDDAVEYFKG--IGEHYKAEI-IASIPSNEAISLYREGDFID--LCRGP 189

Query: 698 HVSSTGEIMLLYIV 711
           HV STG++ +  ++
Sbjct: 190 HVPSTGKLKVFKLM 203


>gi|325276812|ref|ZP_08142513.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324098050|gb|EGB96195.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDLAAIEKRMMELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKVTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|305663927|ref|YP_003860215.1| Ala-tRNA(Pro) hydrolase [Ignisphaera aggregans DSM 17230]
 gi|304378496|gb|ADM28335.1| Ala-tRNA(Pro) hydrolase [Ignisphaera aggregans DSM 17230]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 19/213 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V ++T FY + GG   DTG  +    + ++  V+   E   V H +    I   E   V
Sbjct: 27  IVLNRTAFYPKTGGLESDTGYIVKGDKKYRVVQVRIDKESGDVVHELESSPIDIKEGDEV 86

Query: 573 LTI-DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + I D+  R +L   H+A H+L   +     + ++  G  I P+    D +    I   +
Sbjct: 87  MGILDWDRRYRLMRLHTAAHILSAIMYRDYNALIT--GGNIYPEYAYDDYS----IEVFD 140

Query: 632 LKSIEDNV---NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYED 685
            K  ED +   N+I+ +NL V    + R++A+       L ++     +++R+V +    
Sbjct: 141 RKIFEDAIAKANEIVKKNLEVKIYWLERDEAMKIPGIVKLASRLPPNVEKLRIVEIP--- 197

Query: 686 GGVHSSALCGGTHVSSTGEI-MLLYIVSESSIR 717
            GV   A  GG HV +T EI  +++I +E+  R
Sbjct: 198 -GVDIQA-DGGPHVRNTQEIGEIVFIKAENKGR 228


>gi|88809590|ref|ZP_01125097.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786340|gb|EAR17500.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 611

 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +VL    +N + L I HS +H++  A+  +        G   T  G  +D  +  P T 
Sbjct: 22  PVVLPKTSENEQLLKIRHSMSHVMAMAVQQLFPQARVTIGPW-TESGFYYDFDNPDPFTE 80

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVSV 681
           A+LK+I+  +  II + LP+    ++R  A A   A         L G +    +  +  
Sbjct: 81  ADLKAIKKGMIKIINKKLPLERVEVSRSQAEAKIKAQNEPYKLEILEGLQEPITLYTLGE 140

Query: 682 EYEDGGVHSSALCGGTHVSSTGEI 705
           ++ D       LC G HV  TG++
Sbjct: 141 DWWD-------LCAGPHVDHTGQL 157


>gi|289668713|ref|ZP_06489788.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+   L   V      +  +G  +D+   +P T  ++  IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQ-LYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAVIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSA----LCGGT 697
           Q+  V+ ++  R + I     A  G +Y  ++R++    ED    G++       +C G 
Sbjct: 130 QDYDVIKKVTPRAEVIE--VFAQRGEEY--KLRLIEDMSEDITAMGLYYHQEYVDMCRGP 185

Query: 698 HVSST 702
           HV +T
Sbjct: 186 HVPNT 190


>gi|312961943|ref|ZP_07776440.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283753|gb|EFQ62337.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  ++ +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPDDLAAIEQRMHALIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|303248736|ref|ZP_07334989.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302489901|gb|EFL49829.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 647

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +  +     G  I  +G  +D    +P T  +L++IE  +   IA
Sbjct: 71  IRHSTAHIMAEAVKKLFPAAQVTIGPSIE-NGFYYDFAFERPFTPEDLEAIEAEMQKSIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-------VVSVEYEDGGVHSSALCGGT 697
            N P     + + DA A  A+   G  Y   +         VS+ Y  G    + LC G 
Sbjct: 130 ANAPFSCTFVPKADAKALFASQ--GEVYKLEIMDENIVGDTVSL-YRHGTF--TDLCRGP 184

Query: 698 HVSSTGEIMLLYIVS 712
           HV +TG +    ++S
Sbjct: 185 HVPTTGAVKAFKLLS 199


>gi|227495497|ref|ZP_03925813.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831044|gb|EEH63427.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 665

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS TH++  A+   L   V         DG  +D  + +P T  +LK IE  +  I+ 
Sbjct: 67  LRHSCTHVMAQAVQQ-LNPQVDLGIGPPVTDGFYYDFGNVEPFTPEDLKEIEKVMKRIVK 125

Query: 645 QNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRVVSVEY------------EDGG 687
           +    V R++  E+A A  A       L+G K +D     +VE              +G 
Sbjct: 126 EGQSFVRRVVTEEEARAELADQPHKLHLIGAKGSDLGEGAAVEVGGGELTIYDNVRRNGE 185

Query: 688 VHSSALCGGTHVSST 702
           V  S LC G H+ +T
Sbjct: 186 VAWSDLCRGPHIPNT 200


>gi|124023562|ref|YP_001017869.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166225478|sp|A2CAU4|SYT_PROM3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123963848|gb|ABM78604.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9303]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I HS  HL+ HA+  +        G  I  DG  +D+ + +P T  +L++IE  + +++
Sbjct: 70  TIRHSFAHLIGHAVKQLYPEAKMAIGPVIE-DGFYYDIAYDQPFTPKDLEAIEARMKELV 128

Query: 644 AQNLPVVTRIMNREDA 659
             +  V   I++RE+A
Sbjct: 129 KLDYDVNVEIVSREEA 144


>gi|302063985|ref|ZP_07255526.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
          Length = 590

 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDLAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVS--VEYEDGGVHSSA----LCGGT 697
           ++  V+ ++  R + I      +   ++ D ++R+V    + +  G++       +C G 
Sbjct: 130 KDYDVIKKVTPRAEVI-----EVFTARHEDYKLRLVEGMPDEQAMGLYYHEEYVDMCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|255066456|ref|ZP_05318311.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049336|gb|EET44800.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  +D+   K
Sbjct: 52  TEDSTVQIITPKDQEGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEK 110

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P T  ++ +IE  + ++IAQ+  V+  +  R + I        G +Y  R+     E E 
Sbjct: 111 PFTPEDVAAIEARMKELIAQDYNVIKIMTPRAETIKIFQDR--GEEYKLRLIEDMPEVEA 168

Query: 686 GGVHSSA----LCGGTHVSST 702
            G++       +C G HV +T
Sbjct: 169 MGMYHHQEYVDMCRGPHVPNT 189


>gi|319898981|ref|YP_004159074.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402945|emb|CBI76496.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 658

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE  + +II 
Sbjct: 74  IRHDCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARKQPFTLDDLTIIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +N P    I +RE A  I S    L   +  D +   + + V Y+        LC G H+
Sbjct: 133 RNKPFRKEIWSREKAKKIFSEKNELYKIELIDAIPDDQDLKVYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
            STG+I
Sbjct: 190 QSTGQI 195


>gi|269792334|ref|YP_003317238.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099969|gb|ACZ18956.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 631

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 12/134 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA+HL+  A+  +        G  I  DG  +D+     +T  +L  IE+ +  I+ 
Sbjct: 69  LRHSASHLMAQAVMRLFPGAKLGIGPSIK-DGFYYDILFPSQVTDEDLPRIEEEMMRIVR 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
            +LPV   +M R++A+      L  ++  D    +  E +D  V          LC G H
Sbjct: 128 DDLPVERLVMGRDEAL-----ELFRSRGEDFKLELISEIQDDTVSLYRQGEFVDLCRGPH 182

Query: 699 VSSTGEIMLLYIVS 712
           V  TG +  + ++S
Sbjct: 183 VPRTGMLKHVKLLS 196


>gi|254453851|ref|ZP_05067288.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198268257|gb|EDY92527.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 649

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 33/182 (18%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  DG  +D    KP T  +L +IE  + +II 
Sbjct: 75  IRHDLAHIMARAVQELWPDTQVTIGPVIK-DGWYYDFDRKKPFTPDDLATIEKKMKEIIN 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----------L 693
           +   V T + +RE AI           Y DR     VE  +G                 L
Sbjct: 134 KRDAVRTEVWDREVAIKY---------YEDRGEPYKVELINGIPGDEPLRMYWHGDWQDL 184

Query: 694 CGGTHVSSTGEI-----MLLYIVSE----SSIRAGIRRIEAITGQ---RARSHLMGQDEK 741
           C G H+ +TG++      L+ I        S RA ++RI  +  Q   + R+H+   +E 
Sbjct: 185 CRGPHLQNTGQVPGDSWKLMSIAGAYWRGDSDRAMLQRIYGVAFQNKEQLRAHMNMLEEA 244

Query: 742 LK 743
            K
Sbjct: 245 AK 246


>gi|148239112|ref|YP_001224499.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166225511|sp|A5GJT7|SYT_SYNPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147847651|emb|CAK23202.1| Threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 610

 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL    +N + L I HS +H++  A+  +  +     G   T  G  +D  + +P T A
Sbjct: 23  VVLPKTSENEQLLRIRHSMSHVMAMAVQQLFPNARVTIGPW-TESGFYYDFDNPEPFTEA 81

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVSVE 682
           +LK+I+  +  II + LP+    ++R +A     A         L G +    +  +  +
Sbjct: 82  DLKAIKKGMIKIINKKLPLERVEVSRSEAEEKIKAQNEPYKLEILEGLQEPITLYTLGED 141

Query: 683 YEDGGVHSSALCGGTHVSSTGEI 705
           + D       LC G HV +TG++
Sbjct: 142 WWD-------LCAGPHVENTGQL 157


>gi|145591738|ref|YP_001153740.1| threonyl/alanyl tRNA synthetase, SAD [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283506|gb|ABP51088.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum arsenaticum DSM 13514]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 17/239 (7%)

Query: 493 KAIVQQGEIVEEA------VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
           K + Q+   ++EA      +SG   EVV D+T F+  AGG   D+G  +  G R      
Sbjct: 4   KLLYQEDSYLKEAEATVLEISGN--EVVLDKTVFHDGAGGVAADSGYIVYGGERYSAIAA 61

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            K  E   V H +      +    +V  + ++ R +    H+A H+L   L    G+ ++
Sbjct: 62  HKGGE---VVHVLDRAPSFKPGDVVVGVVHWEKRYRKMRLHTAAHILSAVLYNRHGALIT 118

Query: 607 QNGSCITPDGLR--FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             G  IT +  R  F+V           +     VN+I A+ + V    + RE+A+    
Sbjct: 119 --GGDITHEYARDDFNVEGDMATVRKIFEEAVAEVNEIAARGIEVKVYWLPREEALKIPG 176

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              L  K    +  + +  E  GV   A  GG HV +T EI  + I+   +   G +R+
Sbjct: 177 VVKLAEKMPPDIPTLRI-VEIPGVDIQA-DGGPHVRNTKEIGTVKILKVENRGKGKKRL 233


>gi|323446843|gb|EGB02865.1| hypothetical protein AURANDRAFT_17832 [Aureococcus anophagefferens]
          Length = 86

 Score = 45.1 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)

Query: 580 RRQLSINHSATHLLHHALSTIL--GSH-------------VSQNGSCITPDGLRFDVTHS 624
           R +++ NH+ TH+L+ AL  +L  GS               +Q GS +  + LRFD    
Sbjct: 1   RVRVAPNHTMTHVLNFALREVLLGGSEGAKADAEKTGVDRCAQRGSYVDDERLRFDFAWD 60

Query: 625 KPITSAELKSIEDNVNDIIAQNLPV 649
            P+T+ +LK++E  VN+ IA  L V
Sbjct: 61  APLTADQLKAVEAIVNETIAAGLVV 85


>gi|166365900|ref|YP_001658173.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088273|dbj|BAG02981.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 618

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 30/158 (18%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           I+  +++ + I H+  H+L  A+ T+        G   T  G  +D     P T  +L+ 
Sbjct: 15  IEEDSQKIVKIRHTCAHILAMAVQTLFPETKVAIGPW-TETGFYYDFDRPTPFTPEDLEK 73

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVE---------- 682
           I   +  II +NLP++  ++ R +  A      L   Y   +  R+   E          
Sbjct: 74  IAAEMGRIIGKNLPIIREVLERSEITAE--IERLNQPYKRSILERIPPDETITRYFIGSP 131

Query: 683 ----------YEDGGVHSSA-----LCGGTHVSSTGEI 705
                       DG V         LC G H++STGEI
Sbjct: 132 DAGRSDREPSLIDGAVSPPEEFWWDLCAGPHLNSTGEI 169


>gi|77410413|ref|ZP_00786787.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77170978|gb|EAO74473.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 76

 Score = 45.1 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  + G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L + T   +
Sbjct: 3   ALPMLFGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNALTITTTETD 62

Query: 656 REDAIASG 663
            E A   G
Sbjct: 63  VETAKEMG 70


>gi|325661884|ref|ZP_08150505.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471862|gb|EGC75079.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H+L  A+  +        G  I  DG  +D     P T+ +L++IE  +  I+
Sbjct: 69  AFRHTTSHILAQAVKRLFPDTKLAIGPAID-DGFYYDFDREVPFTTEDLETIEKEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGV------HSSALCGG 696
            ++L +    + RE+AI     AL+  K    +V ++    ED  +        + LC G
Sbjct: 128 KEDLKIEQFTLPREEAI-----ALMKEKEEPYKVELIEDLPEDAVISFYKQGEFTDLCAG 182

Query: 697 THVSSTGEIMLLYIVS 712
            H+ ST  +    + S
Sbjct: 183 PHLLSTKSVKAFKLTS 198


>gi|134301672|ref|YP_001121640.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166223343|sp|A4IX68|SYT_FRATW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134049449|gb|ABO46520.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQMKIYTQDNFSDLCRGPHI 185

Query: 700 SST 702
            +T
Sbjct: 186 PNT 188


>gi|254580109|ref|XP_002496040.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
 gi|238938931|emb|CAR27107.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
          Length = 716

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 47/209 (22%)

Query: 528 LGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR-QLSI 585
           L D  C A  DG   Q+ D+++  EG        E   LR E+     +D++++  Q   
Sbjct: 87  LPDKLCIAKVDG---QLWDLERPFEG-------TEGQELRLEL-----LDFESKEGQQVF 131

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV---------THSKPITSAELK 633
            HS+ H+L  A    LG+H+     C  P   DG  +D+            K ++ A+  
Sbjct: 132 WHSSAHVLGEACECNLGAHI-----CFGPPTDDGFFYDMAVRDSLNPKAEEKTVSQADFP 186

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           ++E    + I Q       +M +ED +   +     +KY  +  ++  +  DGG  +   
Sbjct: 187 NLEGVAKNAIKQKQKFERLLMTKEDLLKMFSY----SKY--KTYLIQTKVPDGGSSTVYR 240

Query: 694 CG-------GTHVSSTGEIMLLYIVSESS 715
           CG       G H+  TG I    I+  S+
Sbjct: 241 CGPLIDLCMGPHIPHTGRIKAFKILKNSA 269


>gi|326571308|gb|EGE21325.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 639

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  + ++I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLDDMAKIEARMTELIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|163851744|ref|YP_001639787.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|163663349|gb|ABY30716.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 675

 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  + +II+
Sbjct: 71  IRHDCAHVLAEAVQALWPGTQVTIGPVIE-NGFYYDFAKDEPFTPEDFPKIEAKMREIIS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++ P    +  R+D  A  A    G  Y   +       ED  ++       LC G H++
Sbjct: 130 RDAPFTKEVWKRDDVKALFAER--GESYKVELVDAIPPGEDLKIYRQGEWFDLCRGPHMT 187

Query: 701 STGEI 705
           STG++
Sbjct: 188 STGKV 192


>gi|299135303|ref|ZP_07028494.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298590280|gb|EFI50484.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 681

 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 575 IDYQNR---RQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           I++ NR   R L  I H A H+L  A+ T+        G  I  +G  +D   ++P T  
Sbjct: 82  IEFINRDDPRALELIRHDAAHVLAEAVQTLWPGTQVTIGPVID-NGFYYDFFRNEPFTPE 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYED 685
           +  +IE  + +IIA++ P    +  RE    + S    +   +  D +   + + + Y+ 
Sbjct: 141 DFAAIEKKMREIIARDKPFTKEVWTREQTKQVFSDNGEMFKVELLDAIPADQQIKI-YKQ 199

Query: 686 GGVHSSALCGGTHVSSTGEI 705
           G      LC G H++S G++
Sbjct: 200 GDWFD--LCRGPHMTSVGKV 217


>gi|327439263|dbj|BAK15628.1| threonyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL   A+  +        G  I   G  +D+    PIT+ +L +IE  +  IIA
Sbjct: 74  LRHSTAHLTAQAVKRLYPDAKLGIGPVID-SGFYYDIDSPTPITAEDLPAIEKEMKKIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY----------NDRVRVVSVEYEDGGVHSSALC 694
           +N+ +  + ++R++  A      +G +Y          +D+V +    Y  G      LC
Sbjct: 133 ENIEIERKNVSRDE--AQKIYEEVGDEYKLELLEAIPADDQVSI----YYQGDFFD--LC 184

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG++    ++S
Sbjct: 185 RGVHVPSTGKLKEFKLLS 202


>gi|296113663|ref|YP_003627601.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921357|gb|ADG61708.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 639

 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  + ++I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLDDMAKIEARMTELIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|187931727|ref|YP_001891712.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691566|sp|B2SGS3|SYT_FRATM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187712636|gb|ACD30933.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQMKIYTQDNFSDLCRGPHI 185

Query: 700 SST 702
            +T
Sbjct: 186 PNT 188


>gi|75908999|ref|YP_323295.1| threonyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|75702724|gb|ABA22400.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Anabaena
           variabilis ATCC 29413]
          Length = 615

 Score = 45.1 bits (105), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II 
Sbjct: 36  IRHTASHVMAMAVQKLFPKAQVTIGPWIE-NGFYYDFDSPEPFTDKDLKAIQKEMVKIIN 94

Query: 645 QNLPVVTRIMNREDA-------IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + LPVV   ++RE+A              +L    ++ + +  +     G     LC G 
Sbjct: 95  RKLPVVREEVSREEAERRIQEIKEPYKLEILADIKSEPITIYHL-----GNEWWDLCAGP 149

Query: 698 HVSSTGEI 705
           HV +T ++
Sbjct: 150 HVENTKDL 157


>gi|332041318|gb|EGI77680.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 644

 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+++ +P T  ++ +IE  +  +IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPTARMVIGPVIE-EGFYYDISYERPFTPDDVAAIEARMKALIA 129

Query: 645 QNLPVVTRIMNREDAI 660
           Q+  VV ++  R + I
Sbjct: 130 QDYDVVKKMTPRAEVI 145


>gi|331085681|ref|ZP_08334764.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406604|gb|EGG86109.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 643

 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H+L  A+  +        G  I  DG  +D     P T+ +L++IE  +  I+
Sbjct: 69  AFRHTTSHILAQAVKRLFPDTKLAIGPAID-DGFYYDFDREVPFTTEDLETIEKEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGV------HSSALCGG 696
            ++L +    + RE+AI     AL+  K    +V ++    ED  +        + LC G
Sbjct: 128 KEDLKIEQFTLPREEAI-----ALMKEKEEPYKVELIEDLPEDAVISFYKQGEFTDLCAG 182

Query: 697 THVSSTGEIMLLYIVS 712
            H+ ST  +    + S
Sbjct: 183 PHLLSTKSVKAFKLTS 198


>gi|326570601|gb|EGE20637.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 639

 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  + ++I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLDDMAKIEARMTELIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|126650283|ref|ZP_01722511.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126592933|gb|EAZ86915.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 637

 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 11/198 (5%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V+  Q P   +     G T   I   IR    +++KKA    V+  IV+      E + 
Sbjct: 4   QVIHIQFPDGQQQAFTKGVTLTEIAQAIR---PELRKKAVAGSVNGTIVDLTRPIMEDAQ 60

Query: 572 VLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   D  ++  +  I HS  HLL  A+   L  H       +  +G  +D+  +  +  +
Sbjct: 61  ITLYDASSKEGIEVIRHSTAHLLAQAVKR-LYPHAQFGVGPVIENGFYYDIDIADTLALS 119

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGG 687
           +L+ IE  +  I+ +N+ +  R ++R +A    A   L  +  + +     V++ YE G 
Sbjct: 120 DLQQIEKTMKQIVRENVQIKRREVSRNEAKELFAHDALKLELLESIPADETVTI-YEQGE 178

Query: 688 VHSSALCGGTHVSSTGEI 705
            +   LC G+HV STG++
Sbjct: 179 FYD--LCRGSHVPSTGKL 194


>gi|301061986|ref|ZP_07202704.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300443910|gb|EFK07957.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 483

 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +H++  A+  +        G  I  DG  +D  + +P    +L  +E+ +++II 
Sbjct: 74  LRHSTSHVMAMAVRELFPGVKVTIGPAIK-DGFYYDFDYKRPFKEDDLPLVEEKMHEIIE 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGT 697
            +LP       R++   S A A    +  D  +V  +E  D  + S       + LC G 
Sbjct: 133 ADLP-----FTRKETAVSEALAFFKAQGED-YKVELIEDLDAEMVSLYTQGSFTDLCRGP 186

Query: 698 HVSSTGEIMLLYIV 711
           H+ STG I   +++
Sbjct: 187 HIPSTGMIKAFHLI 200


>gi|289548737|ref|YP_003473725.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182354|gb|ADC89598.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 645

 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 585 INHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDI 642
           + H+ +H++  AL  I G   V       T +G  +DV      I   +L  IE+ +  I
Sbjct: 69  MRHTLSHIMAQALKEIYGYDRVHLGVGPTTEEGFYYDVEVEGISIREEDLPIIEERMRQI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVR---VVSVEYEDGGVHSSALCGGT 697
           +++NLP+V + +++E A+    +     K +  +R++   V+SV Y+ G      LC G 
Sbjct: 129 VSRNLPIVRQEVSKEYALKLFESLKEPYKLDIINRIQEGDVISV-YQQG--EFVDLCRGP 185

Query: 698 HVSSTG 703
           HV STG
Sbjct: 186 HVPSTG 191


>gi|17227831|ref|NP_484379.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17129680|dbj|BAB72293.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 615

 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II 
Sbjct: 36  IRHTASHVMAMAVQKLFPKAQVTIGPWIE-NGFYYDFDSPEPFTDKDLKAIQKEMVKIIN 94

Query: 645 QNLPVVTRIMNREDA-------IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + LPVV   ++RE+A              +L    ++ + +  +     G     LC G 
Sbjct: 95  RKLPVVREEVSREEAERRIQEIKEPYKLEILADIKSEPITIYHL-----GNEWWDLCAGP 149

Query: 698 HVSSTGEI 705
           HV +T ++
Sbjct: 150 HVENTKDL 157


>gi|303237224|ref|ZP_07323794.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482611|gb|EFL45636.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 649

 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ HLL  AL  +        G  I  +G  +DV  +  + I+  +   IE  + ++  
Sbjct: 73  HSSAHLLAEALKELYPGIQFGFGPAIE-NGFFYDVQTADGQAISENDFPKIEAKMLELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTH 698
           ++ P+V R +++ DA+    A   G +Y  +V  +  + EDG + + +      LC G H
Sbjct: 132 KDSPIVRRDVSKADAVKEFTAD--GQEY--KVEHIVEDLEDGTISTYSQGNFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++STG I  + +   +S+     R +A + Q  R
Sbjct: 188 LTSTGAIKAVKL---TSVAGAFWRGDANSNQLTR 218


>gi|229102972|ref|ZP_04233661.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228680387|gb|EEL34575.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HS  H+L  A+  + G  ++     +  +G  +D+     +   +
Sbjct: 63  IITIDSNEGVEIA-RHSVAHILAQAVKRLYGD-INLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  + +II +N+ +    ++RE+A      A L  + NDR+++  +E    G   +
Sbjct: 121 LRKIEKEMRNIIKENISIERVEVSREEA------AKLFQEMNDRLKLELLEAIPSGESVT 174

Query: 692 A--------LCGGTHVSSTG 703
                    LC G HV STG
Sbjct: 175 LYKQGEFVDLCRGPHVPSTG 194


>gi|282879569|ref|ZP_06288300.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306517|gb|EFA98546.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella timonensis CRIS 5C-B1]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  ++   G   S N               SKP   AE K IE  +N++I Q+
Sbjct: 12  HTAEHLLNQLMTRKFGCKRSDNAHIERKKSKMTFRLESKPDRHAE-KEIETRMNELIQQD 70

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           LP+    ++R+      +   L     D +R+  +     G +    C G HV ST +I
Sbjct: 71  LPITFEEVDRQHLPEGVSLERLPANVPDLIRICRI-----GDYDICPCIGKHVRSTRQI 124


>gi|225868159|ref|YP_002744107.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259516675|sp|C0MCN7|SYT_STRS7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225701435|emb|CAW98547.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +        G  I  DG  +D  ++   I++ 
Sbjct: 59  IITADHEDAFEV-LRHSAAHLFAQAAKRLFPKLHLGVGPAIA-DGFYYDTDNADGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDG 686
           +L  IE+ +  I+ +N P +   + +E+A+           L  ++ D    ++V Y  G
Sbjct: 117 DLPRIEEEMKKIVKENFPCIREEITKEEALELFKDDPYKVELINEHADDAAGLTV-YRQG 175

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I + ++++
Sbjct: 176 EF--VDLCRGPHVPSTGRIQVFHLLN 199


>gi|291295577|ref|YP_003506975.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290470536|gb|ADD27955.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 652

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 585 INHSATHLLHHA---LSTILGSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDN 638
             H+  H++  A   L T  G    +    I P   +G  +D+   +PI   +L  IE+ 
Sbjct: 70  FRHTLAHVMAQAVRELYTERGYRPEEVKLAIGPVIENGFYYDMDAPEPIREEDLPIIEEK 129

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------- 690
           +  I+A NLP+   ++ RE+A+   A       Y   +     E E+   ++        
Sbjct: 130 MRRIVAANLPLKRFVLPREEALKRYAGI---DPYKTELIQDLPESEELSFYAQGDDTYGF 186

Query: 691 SALCGGTHVSSTGEI 705
           + LC G HV STG I
Sbjct: 187 TDLCRGPHVPSTGRI 201


>gi|254228206|ref|ZP_04921635.1| metal-dependent hydrolase [Vibrio sp. Ex25]
 gi|151939279|gb|EDN58108.1| metal-dependent hydrolase [Vibrio sp. Ex25]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 44/225 (19%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KVE+  DQT F+AE+GGQ  D G    +GI + I     +  G+ + + +      
Sbjct: 39  VDGNKVEL--DQTIFFAESGGQESDKGTI--NGIPVLIA----QKLGVRLIYTLESSPNF 90

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALS------TILGSHVSQNGSCITPDGLRF 619
               ++   ID++ R  L   H A  ++             +G+H+S+N S       R 
Sbjct: 91  TLGDAVTTCIDWKRRYALMKLHFAAEVVLEMFYQRREGIVKIGAHISENKS-------RI 143

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK+IE +V D+I  +  +++   ++E             +Y    RV 
Sbjct: 144 DFEWSESIGPL-LKAIETDVQDLINSDSVIISDFSDQESE----------RRY---WRV- 188

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                DG   +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 189 -----DG--FAQVPCGGTHLKRTSEVGQIQL-KRKNIGKGKERVE 225


>gi|254369559|ref|ZP_04985570.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122513|gb|EDO66648.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQMKIYTQDNFSDLCRGPHI 185

Query: 700 SST 702
            +T
Sbjct: 186 PNT 188


>gi|70729481|ref|YP_259219.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68343780|gb|AAY91386.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 640

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++  V+ ++  R + I    A   G  Y  R+       + + + Y +  V    +C G 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFKAR--GEDYKLRLVEDMPNEQAMGLYYHEEYVD---MCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|89256700|ref|YP_514062.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|156502860|ref|YP_001428925.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010452|ref|ZP_02275383.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368007|ref|ZP_04984027.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|290954131|ref|ZP_06558752.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312449|ref|ZP_06803221.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122999730|sp|Q2A2J0|SYT_FRATH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223341|sp|A7NDB6|SYT_FRATF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89144531|emb|CAJ79846.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253817|gb|EBA52911.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253463|gb|ABU61969.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 634

 Score = 45.1 bits (105), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQMKIYTQDNFSDLCRGPHI 185

Query: 700 SSTG 703
            +T 
Sbjct: 186 PNTS 189


>gi|46199818|ref|YP_005485.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|73919837|sp|Q72HH1|SYT_THET2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46197445|gb|AAS81858.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 659

 Score = 45.1 bits (105), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 582 QLSINHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           Q    H+  H+L  A+             V      +   G  +D+   +P++  +L +I
Sbjct: 67  QTLFRHTLAHVLAQAVKEFFREKGYDPESVRLGVGPVIEKGFYYDIEAPEPLSDEDLPAI 126

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E  + +I+ ++LP+   +++RE+A+A           L  +  +   +   +  D     
Sbjct: 127 EAKMREILKRDLPLRRFVLSREEALARYRGKDPYKTELILEIPEGEEISFYQQGDEAYGF 186

Query: 691 SALCGGTHVSSTGEI 705
           + LC G HV STG I
Sbjct: 187 TDLCRGPHVPSTGRI 201


>gi|143764|gb|AAA22863.1| threonyl-tRNA synthetase (thrS2) (EC 6.1.1.3) [Bacillus subtilis]
          Length = 638

 Score = 45.1 bits (105), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E+S+V T+D Q   Q+ + H+  H+L  A+  + G  VS     +  DG  +D+   K 
Sbjct: 58  AELSIV-TLDSQEGLQV-VRHTTAHVLAQAVKRLYGE-VSLGVGPVILDGFYYDMKLGKS 114

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--- 683
           + S +L++IE  + +II +NL  + RI      ++   A  L  + ++R+++  ++    
Sbjct: 115 LASGDLEAIEKEMKNIINENLE-IKRI-----EVSYEEAEELFAQKDERLKLEILKDIPR 168

Query: 684 -EDGGVHSSA----LCGGTHVSSTGEI 705
            ED  ++       LC G H+ STG I
Sbjct: 169 GEDITLYQQGEFVDLCRGPHLPSTGMI 195


>gi|299135910|ref|ZP_07029094.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298602034|gb|EFI58188.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  +       +G   T +G  +DV    P T A+L SIE  + +++A
Sbjct: 105 VRHSAAHVMATAILELFPETKLGHGPA-TDNGFFYDVYREVPFTEADLASIEQKMAEVVA 163

Query: 645 QNLPVVTRIMNREDAIASGAA--ALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHV 699
           ++   V     RE  +   AA    +   + +R      E   Y++G    +  C G HV
Sbjct: 164 RDEKFVRVEEPREKGLTDYAAQGEFMKVHFIERFTKPGDEISLYKNGNF--TDFCRGPHV 221

Query: 700 SSTGEIMLLYIVS 712
            ST  +    ++S
Sbjct: 222 PSTSRVKAFKVMS 234


>gi|301089746|ref|XP_002895146.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262101719|gb|EEY59771.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 744

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 22/140 (15%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPD---GLRFD-VTHSKPITSAELKSIEDNVNDI 642
           HS+ H+L  +L TI G+H++     I P    G  +D    ++ I  ++L  IE     +
Sbjct: 178 HSSAHILGESLETIKGAHLT-----IGPPVEGGFYYDSYMGTETIPESDLSVIEKACQKV 232

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG------- 695
           +         ++++E+A+   A  +  T+      ++S +  DGG  ++  CG       
Sbjct: 233 VKDKQKFERIVLSKEEALEMFADNVFKTQ------IISTKIPDGGKTTAYRCGPLIDLCR 286

Query: 696 GTHVSSTGEIMLLYIVSESS 715
           G HV  TG+I  L +   SS
Sbjct: 287 GPHVPHTGKIKALAVTRTSS 306


>gi|228933677|ref|ZP_04096525.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826004|gb|EEM71789.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 639

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  + G  ++     +  +G  +D+     +   +
Sbjct: 63  IITIDSNEGVEIA-RHSAAHILAQAVKRLYGD-INLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  +  II +N+ V    ++RE+A      A L  + NDR+++  +E    G   +
Sbjct: 121 LRKIEKEMKKIINENIKVERVEVSREEA------AKLFQEMNDRLKLELLEAIPSGESVT 174

Query: 692 A--------LCGGTHVSSTG 703
                    LC G H+ STG
Sbjct: 175 LYKQGEFVDLCRGPHLPSTG 194


>gi|195978510|ref|YP_002123754.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975215|gb|ACG62741.1| threonyl-tRNA synthetase ThrS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 655

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +        G  I  DG  +D  ++   I++ 
Sbjct: 66  IITADHEDAFEV-LRHSAAHLFAQAAKRLFPKLHLGVGPAIA-DGFYYDTDNADGQISNE 123

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDG 686
           +L  IE+ +  I+ +N P +   + +E+A+           L  ++ D    ++V Y  G
Sbjct: 124 DLPRIEEEMKKIVKENFPCIREEITKEEALELFKDDPYKVELINEHADDAAGLTV-YRQG 182

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I + ++++
Sbjct: 183 EF--VDLCRGPHVPSTGRIQVFHLLN 206


>gi|30262390|ref|NP_844767.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47527681|ref|YP_019030.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185231|ref|YP_028483.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|165870612|ref|ZP_02215266.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167633022|ref|ZP_02391348.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639601|ref|ZP_02397871.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170686938|ref|ZP_02878157.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706731|ref|ZP_02897190.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177649587|ref|ZP_02932589.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190565155|ref|ZP_03018075.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227814802|ref|YP_002814811.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229603163|ref|YP_002866723.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684964|ref|ZP_05148824.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254722370|ref|ZP_05184158.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254737411|ref|ZP_05195115.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743403|ref|ZP_05201088.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751726|ref|ZP_05203763.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254760245|ref|ZP_05212269.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30257021|gb|AAP26253.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47502829|gb|AAT31505.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179158|gb|AAT54534.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164713767|gb|EDR19290.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512310|gb|EDR87686.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167531834|gb|EDR94499.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128462|gb|EDS97330.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668989|gb|EDT19733.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172084661|gb|EDT69719.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190563182|gb|EDV17147.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227004862|gb|ACP14605.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229267571|gb|ACQ49208.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 639

 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 16/140 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  + G  ++     +  +G  +D+     +   +
Sbjct: 63  IITIDSNEGVEIA-RHSAAHILAQAVKRLYGD-INLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  +  II +N+ V    ++RE+A      A L  + NDR+++  +E    G   +
Sbjct: 121 LRKIEKEMKKIINENIKVERVEVSREEA------AKLFQEMNDRLKLELLEAIPSGESVT 174

Query: 692 A--------LCGGTHVSSTG 703
                    LC G H+ STG
Sbjct: 175 LYKQGEFVDLCRGPHLPSTG 194


>gi|330810593|ref|YP_004355055.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378701|gb|AEA70051.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  S     G  I  +G  +D+   +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPSAKMVIGPVID-EGFYYDIAFERPFTPEDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|148261186|ref|YP_001235313.1| threonyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|166223313|sp|A5G0L2|SYT_ACICJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146402867|gb|ABQ31394.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidiphilium
           cryptum JF-5]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I   G  +D   ++P T  +L +IE  + +IIA
Sbjct: 71  IRHDAAHVMAEAVQALYPGTQVTIGPAIE-GGFYYDFFRNEPFTPDDLPAIEAKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGGTH 698
            N P    + +R++AI    A   G ++  + +R +        Y  G      LC G H
Sbjct: 130 ANAPFTREVWDRDEAIRFFEAR--GERFKAELIRDLPASETITIYRQGDWLD--LCRGPH 185

Query: 699 VSSTGEI 705
           +  TG+I
Sbjct: 186 MRGTGDI 192


>gi|115315107|ref|YP_763830.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|122324891|sp|Q0BL41|SYT_FRATO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115130006|gb|ABI83193.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKTEAIEFFKAQ--GENY--KVEIIDSIADEQMKIYTQDNFSDLCRGPHI 185

Query: 700 SSTG 703
            +T 
Sbjct: 186 PNTS 189


>gi|241767682|ref|ZP_04765314.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax delafieldii 2AN]
 gi|241361362|gb|EER57881.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax delafieldii 2AN]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 34/164 (20%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID++ R ++   H+ +HLL H +  ++      NG  ITPD  R D   + P+   +L +
Sbjct: 41  IDWERRHRMMRLHTTSHLLCHVVPQLV------NGCSITPDYARLDFAMTDPLDKEQLTA 94

Query: 635 IED------------NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
                          +++D      P + + M+ +    +G           R+R + + 
Sbjct: 95  AIAALVAAAHPITVASISDAELDANPQLVKSMSVQPPRGTG-----------RIRTIRIG 143

Query: 683 YEDGGVHSS---ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            E  G+  +     CGGTHV+ST EI  + +       A  RR+
Sbjct: 144 GE--GLQPAIDLQPCGGTHVASTAEIGAVVVTRIEKKSAITRRV 185


>gi|254491441|ref|ZP_05104620.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462919|gb|EEF79189.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 641

 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +HL+  A+  +        G  I  DG  +D ++ +  T  +L  I+  + +I+ 
Sbjct: 71  IRHSTSHLMAQAVKQLYPEAQVTIGPVID-DGFYYDFSYPEAFTPDDLNKIQKRMEEIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           Q+LPV    + R+  I       +G  Y   +        ++SV Y  G      LC G 
Sbjct: 130 QDLPVAREEITRDAGIEMFRD--MGEIYKAEILEDIPKDEILSV-YRQGDF--VDLCRGP 184

Query: 698 HVSSTGEI 705
           HV +TG++
Sbjct: 185 HVPNTGKL 192


>gi|119112306|ref|XP_311697.3| AGAP003413-PA [Anopheles gambiae str. PEST]
 gi|116129883|gb|EAA07381.3| AGAP003413-PA [Anopheles gambiae str. PEST]
          Length = 406

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 30/227 (13%)

Query: 500 EIVEEAVSGQKV----EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           E   + VS +KV     V+F+ T  + E GGQ  D G   G  ++   + V+K +E I  
Sbjct: 13  EFQTKVVSCEKVAGGFNVIFEDTILFPEGGGQPTDHGTVGGRAVK---SVVRKGSEAI-- 67

Query: 556 HHAIVERGILRTEMS----LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            H + + G      +    +V  +D+ NRR    +H   H   H ++ I       N   
Sbjct: 68  -HFLEDDGKGSQPFAAGEQVVQCVDW-NRR---FDHMQQHSGQHLITAIFDREFKYNTKS 122

Query: 612 --ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI----ASGAA 665
             +  +    D+  +K +T  +L+ +E   N +I    PV   +   +D       + A 
Sbjct: 123 WWLGTESSYIDL-EAKDVTREQLERVESICNQLIVDCTPVRVDVYEPDDPALKSDVTRAT 181

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             L    +  +RVV++     G+ S+ +C GTHV + G++  + ++S
Sbjct: 182 RGLPEDVSGPLRVVTI----AGIESN-MCCGTHVRNLGQLQSVKLLS 223


>gi|291165911|gb|EFE27958.1| threonine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 655

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 26/172 (15%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           E+S++   D +  R  +I H+A+H+L  A+  +        G  I   G  +D+ H+ P 
Sbjct: 55  ELSILTPTDEEGLR--TIRHTASHVLAEAVKRVFPDAKLAIGPAIDT-GFYYDIDHA-PF 110

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV--------- 678
           T  +L ++E  +  II ++  +    + RE+AI       L  + N+  +V         
Sbjct: 111 TREDLDTLEKEMKKIIKEDEKITKFELPREEAIK------LMEEKNEPYKVELIQDLPED 164

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRI 723
             + +   G     LC G H+ ST  I    ++S S       S +A ++RI
Sbjct: 165 AVISFYQQGEEFIDLCAGPHLMSTKGIKAYKLISSSMAYWRGDSDKAQLQRI 216


>gi|254374591|ref|ZP_04990072.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151572310|gb|EDN37964.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQVKIYTQDNFSDLCRGPHI 185

Query: 700 SSTG 703
            +T 
Sbjct: 186 PNTS 189


>gi|220928797|ref|YP_002505706.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999125|gb|ACL75726.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L+  H+A+H+L  A+  +        G  I   G  +D    KP +  EL SIE  +  
Sbjct: 68  RLAYRHTASHVLAQAVKRLYPDAKLAIGPAID-TGFYYDFEREKPFSIEELDSIEKEMEK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGT 697
           I+ ++L +   ++ R +AI        G  Y   + +   + E+   +     + LC G 
Sbjct: 127 IVKEDLKLERFVLPRNEAIKLMEEK--GEPYKAELIMDLPQGEEISFYKQGEFTDLCAGP 184

Query: 698 HVSSTGEIMLLYIVS 712
           H++ TG +  + ++S
Sbjct: 185 HLTGTGRLKAVKLLS 199


>gi|224086602|ref|XP_002195068.1| PREDICTED: hypothetical protein LOC100190320 [Taeniopygia guttata]
          Length = 537

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 87/195 (44%), Gaps = 11/195 (5%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++L++D++ R      HS  HL+      + G   +          +  D     P+ +A
Sbjct: 218 VLLSLDWERRFDHMQQHSGQHLISAIAEQMFGFKTTSWELGRQRSVIELDT----PLVTA 273

Query: 631 E-LKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           E ++++E +VN+ I   +PV  R +  +D  + +  +  L   +   VRVV ++    G+
Sbjct: 274 EQVEALEKSVNEKIRDRVPVTVRELAADDPEVETVKSRGLPDDHVGPVRVVDIK----GI 329

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S+ LC GTHVS+  ++ ++ ++     +     +  + G R    +       K+L S 
Sbjct: 330 DSN-LCCGTHVSNLSDLQVIKLLGVEKGKKNKTNLVFLAGNRVLKSIEQSHSTEKALTSL 388

Query: 749 LKVSQGNVVGRVEEI 763
           LK   G  V  V+ +
Sbjct: 389 LKNGPGEHVEAVKRL 403


>gi|225026720|ref|ZP_03715912.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
 gi|224955955|gb|EEG37164.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
          Length = 650

 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L+  H+A+H+L  A+  +        G  I  DG  +D   + P+T  +L +IE  +  
Sbjct: 67  KLAFRHTASHVLAQAVKRLYPEAKLAIGPAIE-DGFYYDFDMA-PLTREDLDAIEKEMKK 124

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGV------HSSA 692
           +I +N P+    + RE+AIA         K  D   +V ++    ED  +        + 
Sbjct: 125 VIKENPPIERYELPREEAIAY-------MKEKDEPYKVELIEDLPEDATISFYKQGDFTD 177

Query: 693 LCGGTHVSSTGEIMLLYIVSES-SIRAGIRRIEAITGQRARSHLMGQD--EKLKSLASFL 749
           LC G H+ S   I    + + S +   G    + +T     ++    D  E+LK L   +
Sbjct: 178 LCAGPHLMSVKPIKAFKLTASSGAYWRGNENNKMLTRIYGTAYTKKADLEERLKYLEE-I 236

Query: 750 KVSQGNVVGRVEEIW 764
           K+   N +GR  E++
Sbjct: 237 KLRDHNRLGREMELF 251


>gi|220926910|ref|YP_002502212.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219951517|gb|ACL61909.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 575 IDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D  + R L  I H   H+L  A+ ++        G  I  +G  +D     P T  +  
Sbjct: 60  LDRTDPRALELIRHDCAHVLAEAVQSLWPETQVTIGPVIE-NGFYYDFYRETPFTPDDFA 118

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA- 692
           +IE  + +IIA++ P    +  R+D  A  A    G  +   +       ED  ++    
Sbjct: 119 AIEARMREIIARDAPFTKEVWARDDVRALFADK--GESFKVELVDAIPPGEDLKIYRQGE 176

Query: 693 ---LCGGTHVSSTGEI 705
              LC G H++STG+I
Sbjct: 177 WFDLCRGPHMTSTGKI 192


>gi|71893938|ref|YP_279384.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|71852065|gb|AAZ44673.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 579

 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L IDY+      +NHS++HLL  A+  IL   V      +  DG  +D   S  I+ ++ 
Sbjct: 3   LKIDYK------LNHSSSHLLALAIK-ILYPGVKFGIGPVFDDGFYYDFDLSVSISQSDF 55

Query: 633 KSIEDNVNDIIAQNLPVVT---RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             IE  +  ++++NL +V    + ++ ++ I          K  +++   S+      + 
Sbjct: 56  PKIEKLMKKLVSKNLKIVETDGKNLDFQNQIYKAELKNDLEKKGEKITYFSIVDSKNNIL 115

Query: 690 SSALCGGTHVSSTGEI 705
              LC G H+ S G+I
Sbjct: 116 FEDLCYGNHLESLGKI 131


>gi|168012416|ref|XP_001758898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690035|gb|EDQ76404.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 613

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  + + L I H++ H+L  A+  +        G  I   G  +D    +P T  
Sbjct: 30  IVLPTNESSEKLLKIRHTSAHVLAMAVQKLFPDAQVTIGPWIE-KGFYYDFDKEEPFTET 88

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDG 686
           +LK I+  ++ II++NLP +TR    ++       A +   Y     + ++   +     
Sbjct: 89  DLKKIKKEMDRIISRNLP-LTREEVAKEEAEKRIKA-INEPYKLEILEGIKTEPITIYKI 146

Query: 687 GVHSSALCGGTHVSSTGEI 705
           G     LC G H+  TG++
Sbjct: 147 GEEWWDLCAGPHLERTGQL 165


>gi|254373138|ref|ZP_04988627.1| threonine-tRNA ligase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570865|gb|EDN36519.1| threonine-tRNA ligase [Francisella novicida GA99-3549]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQVKIYTQDNFSDLCRGPHI 185

Query: 700 SSTG 703
            +T 
Sbjct: 186 PNTS 189


>gi|326404590|ref|YP_004284672.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325051452|dbj|BAJ81790.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I   G  +D   ++P T  +L +IE  + +IIA
Sbjct: 71  IRHDAAHVMAEAVQALYPGTQVTIGPAIE-GGFYYDFFRNEPFTPDDLPAIEAKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGGTH 698
            N P    + +R++AI    A   G ++  + +R +        Y  G      LC G H
Sbjct: 130 ANAPFTREVWDRDEAIRFFEAR--GERFKAELIRDLPASETITIYRQGDWLD--LCRGPH 185

Query: 699 VSSTGEI 705
           +  TG+I
Sbjct: 186 MRGTGDI 192


>gi|149180875|ref|ZP_01859377.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148851394|gb|EDL65542.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 647

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H+L  A+  + G+ V      +  +G  +D+   K ++ ++L  IE  + +II+
Sbjct: 77  MRHSAAHILAQAVQRLYGN-VQLGVGPVIDNGFYYDLDLEKSLSQSDLVEIEKEMKNIIS 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSS 701
           +N P+    ++R++A +  ++  L  +  + +     +SV Y  G      LC G H+ S
Sbjct: 136 ENHPISREELSRKEAESLFSSDPLKVELIEDIPEDETLSV-YRQGEF--VDLCRGPHLPS 192

Query: 702 TG 703
           TG
Sbjct: 193 TG 194


>gi|87198229|ref|YP_495486.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123749972|sp|Q2GBX1|SYT_NOVAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87133910|gb|ABD24652.1| Ser-tRNA(Thr) hydrolase [Novosphingobium aromaticivorans DSM 12444]
          Length = 664

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 12/146 (8%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFD-VTHS 624
            +++LV   D      L+  H   H+L  A+  +  G+ ++   S  T DG  +D     
Sbjct: 58  AQLALVTAKDEAEALDLA-RHDYAHVLAEAVQALFPGTQITFGPS--TDDGFYYDFAPKD 114

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +P T  +L +IE  +  IIA N P+   + +RE  I+       G  +         E E
Sbjct: 115 RPFTDEDLPAIEAEMRKIIAANKPLRREVWSREQLISRWKQQ--GESFKAEWAAELPENE 172

Query: 685 DGGVHSSA-----LCGGTHVSSTGEI 705
           +  V+ S      +C G H+ STG++
Sbjct: 173 ELTVYWSGDDWLDMCRGPHLPSTGKL 198


>gi|1565235|emb|CAB02510.1| Threonyl tRNA Synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 601

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E+S+V T+D Q   Q+ + H+  H+L  A+  + G  VS     +  DG  +D+   K 
Sbjct: 21  AELSIV-TLDSQEGLQV-LRHTTAHVLAQAVKRLYGE-VSLGVGPVILDGFYYDMKLGKS 77

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--- 683
           + S +L++IE  + +II +NL  + RI      ++   A  L  + ++R+++  ++    
Sbjct: 78  LASGDLEAIEKEMKNIINENLE-IKRI-----EVSYEEAEELFAQKDERLKLEILKDIPR 131

Query: 684 -EDGGVHSSA----LCGGTHVSSTGEI 705
            ED  ++       LC G H+ STG I
Sbjct: 132 GEDITLYQQGEFVDLCRGPHLPSTGMI 158


>gi|281357061|ref|ZP_06243551.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281316619|gb|EFB00643.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 591

 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I HSA H++  A+  +        G   T +G  +D      + + +LK+IE  +  +I
Sbjct: 23  TIRHSAAHVMAAAVQQLYPDAKFDIGPS-TENGFYYDFDMEHRLVTEDLKAIEKAMKKLI 81

Query: 644 AQNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            + LP     MNR DA   ++         +  D      + +   G     LC G HV+
Sbjct: 82  GRKLPFECFEMNRADAEKMLSEAGQTYKLERLADIPEDAKITFYKTGDFVD-LCRGPHVA 140

Query: 701 STGEIMLLYIVS 712
           ++GEI  + ++S
Sbjct: 141 NSGEIGAVKLLS 152


>gi|332184284|gb|AEE26538.1| Threonyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKEAIGEADLAAIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ PV  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSTPVSYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQVKIYTQDNFSDLCRGPHI 185

Query: 700 SST 702
            +T
Sbjct: 186 PNT 188


>gi|295706837|ref|YP_003599912.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804496|gb|ADF41562.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 19/139 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  HL+  A+  +      Q G   +  +G  +D+   + IT  +L  IE  +  I+
Sbjct: 74  MRHSTAHLMAQAIKRLYKDTKVQLGVGPVIENGFYYDIDMEESITPEDLGKIEKEMKKIV 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
             N+ +  + ++RE+AI       L  +  D +++  ++          Y+ G      L
Sbjct: 134 NSNIEIERKEVSREEAIQ------LFKEVGDELKLELIDAIPAGEKVTIYQQGEFFD--L 185

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I    ++S
Sbjct: 186 CRGVHVPSTGKIKEFKLLS 204


>gi|225870895|ref|YP_002746842.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225700299|emb|CAW94574.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 655

 Score = 44.7 bits (104), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +        G  I  DG  +D  ++   I++ 
Sbjct: 66  IITADHEDAFEV-LRHSAAHLFAQAAKRLFPKLHLGVGPAIA-DGFYYDTDNADGQISNE 123

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDG 686
           +L  IE+ +  I+ +N P +   + +E+A+           L  ++ D    ++V Y  G
Sbjct: 124 DLPRIEEEMKKIVKENFPCIREEITKEEALELFKDDPYKVELINEHADDAAGLTV-YRQG 182

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I + ++++
Sbjct: 183 EF--VDLCRGPHVPSTGRIRVFHLLN 206


>gi|167746735|ref|ZP_02418862.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
 gi|167653695|gb|EDR97824.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
          Length = 644

 Score = 44.7 bits (104), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

Query: 562 RGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           R IL  +  L +LT D +  R  +  H+A+H+L  A+  +        G  I  +G  +D
Sbjct: 47  RTILEDDCELNILTFDSEGGRH-AFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYD 104

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +    P T  +L+ IE  +  I+ + L +      RE+AIA         + N+  +V  
Sbjct: 105 MEKDTPFTQDDLEKIEAEMKKIVKEGLQITCFTKPREEAIA------FMKERNEPYKVEL 158

Query: 681 VE----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +E          Y+ G      LC G H+ +T  +    + S
Sbjct: 159 IEDLPEDSVISFYQQGEFID--LCAGPHLMTTKPVKAFKLTS 198


>gi|312876378|ref|ZP_07736363.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796872|gb|EFR13216.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 647

 Score = 44.7 bits (104), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 20/190 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II ++
Sbjct: 75  HTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDVEESITMELLEKIEEEMQKIIKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           L +    ++RE+++        G  Y     ND     ++ +   G     LC G H+ S
Sbjct: 135 LKIERFELSREESVKLMQEK--GENYKVELINDIPEGETISFYRQGEFVD-LCTGPHLPS 191

Query: 702 TGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           TG +    ++S +       S    ++RI  I+ ++ +S L   DE LK L    K    
Sbjct: 192 TGRVKAFKLLSVAGAYWRGNSKNKMLQRIYGISFEK-KSEL---DEYLKKLEE-AKKRDH 246

Query: 755 NVVGRVEEIW 764
           N +GR  EI+
Sbjct: 247 NRIGRELEIF 256


>gi|254569696|ref|XP_002491958.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|238031755|emb|CAY69678.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|328351547|emb|CCA37946.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 712

 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 24/142 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDVT---HSKPITSAELKSIEDNVN 640
           HS+ H+L  A     G+H+     CI P   DG  ++++       +T A+  SIE    
Sbjct: 139 HSSAHVLGEACECHYGAHL-----CIGPPTEDGFFYEMSIDNGESFVTQADFPSIEAVAK 193

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG----- 695
             I +       ++++ED +   A      KY  +VR++S +  DG   +   CG     
Sbjct: 194 SAIKEKQKFERLVLSKEDLLKMFAY----NKY--KVRIISEKIPDGTASTVYRCGPLIDL 247

Query: 696 --GTHVSSTGEIMLLYIVSESS 715
             G H+  TG I  + ++  SS
Sbjct: 248 CVGPHIPHTGRIKAIKVLKNSS 269


>gi|254522893|ref|ZP_05134948.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219720484|gb|EED39009.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 633

 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 14/126 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPDVKMVIGPVIA-EGFYYDIYSERPFTPEDMAAIEKRMGELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY--------NDRVRVVSVEYEDGGVHSSALCGG 696
           Q+  V+ ++  R + +    A   G  Y        +D ++ + + Y    V    +C G
Sbjct: 130 QDYDVIKKMTPRAEVVEIFKAR--GEDYKLRLIEDMSDDIQAMGMYYHQEYVD---MCRG 184

Query: 697 THVSST 702
            HV +T
Sbjct: 185 PHVPNT 190


>gi|189485254|ref|YP_001956195.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287213|dbj|BAG13734.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 598

 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I  DG  +D    +  T  +L  IE+ + +II 
Sbjct: 30  LRHSTAHIMAAAVMELFPGTKVAIGPSIE-DGFYYDFDREQAFTPGDLIRIEEKMAEIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
            + P +   + + +A+        G KY      ++ + ED  V      + + LC G H
Sbjct: 89  ADYPFICSYVPKGEAVKEFREK--GEKYKAE---IASQIEDDKVSMYRSGNFTDLCRGPH 143

Query: 699 VSSTGEIMLLYIVS 712
           ++STGE+    ++S
Sbjct: 144 INSTGELKYFKLLS 157


>gi|194335337|ref|YP_002017131.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693365|sp|B4SB93|SYT_PELPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194307814|gb|ACF42514.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 657

 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 28/160 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+  A+  +        G  I   G  +DV  +      +L+ IE+ + +I  ++
Sbjct: 82  HSSSHLMAQAIEELYPGSKFGAGPSIE-QGFYYDVASTHRFREEDLRKIEERMLEISKRD 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRV------------VSVEYEDGGVHSSALC 694
           + +    M+R DAI         T  ND  +V            VS+ ++DG    + LC
Sbjct: 141 IQIRREEMSRTDAI-----EFFKTVRNDPYKVEILEDTLKEVERVSLYHQDG---FTDLC 192

Query: 695 GGTHVSSTGEI--MLLYIVSES-----SIRAGIRRIEAIT 727
            G H+ ST ++  +LL  +S S     S R  ++RI  IT
Sbjct: 193 IGPHIPSTSKVKAVLLSNISSSYWRGDSARENMQRIYGIT 232


>gi|221311719|ref|ZP_03593566.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316045|ref|ZP_03597850.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320956|ref|ZP_03602250.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325241|ref|ZP_03606535.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767793|ref|NP_391636.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763338|sp|P18256|SYT2_BACSU RecName: Full=Threonyl-tRNA synthetase 2; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225185421|emb|CAB15783.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 17/147 (11%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E+S+V T+D Q   Q+ + H+  H+L  A+  + G  VS     +  DG  +D+   K 
Sbjct: 58  AELSIV-TLDSQEGLQV-LRHTTAHVLAQAVKRLYGE-VSLGVGPVILDGFYYDMKLGKS 114

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--- 683
           + S +L++IE  + +II +NL  + RI      ++   A  L  + ++R+++  ++    
Sbjct: 115 LASGDLEAIEKEMKNIINENLE-IKRI-----EVSYEEAEELFAQKDERLKLEILKDIPR 168

Query: 684 -EDGGVHSSA----LCGGTHVSSTGEI 705
            ED  ++       LC G H+ STG I
Sbjct: 169 GEDITLYQQGEFVDLCRGPHLPSTGMI 195


>gi|87124051|ref|ZP_01079901.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168620|gb|EAQ69877.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 612

 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           + ++VL    ++ + L I HS +H++  A+  +        G   T  G  +D  +  P 
Sbjct: 20  DAAVVLPKTSESNQLLRIRHSMSHVMAMAVQHLFPQAQVTIGPW-TETGFYYDFDNPDPF 78

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVV 679
           T A+LK+I   +  II + LP+    ++R++A A   A         L G +    +  +
Sbjct: 79  TEADLKAIRKEMIKIINRKLPLERIAVSRDEAEAKIKAQNEPYKLEILAGLQEPITLYTL 138

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI 705
             ++ D       LC G HV +T E+
Sbjct: 139 GEQWWD-------LCAGPHVDNTSEL 157


>gi|291060195|gb|ADD72930.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 582

 Score = 44.7 bits (104), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I   G  +D +  +P+  A+L  IE+ +  I+ 
Sbjct: 12  LRHSLAHVMAEAVQALFPGTKLAVGPPID-YGFYYDFSPPRPLCDADLAPIEEKMRAILR 70

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSS 701
              P V  +++R DA+A         +  +R   +S +      HS A   LC G HV S
Sbjct: 71  AGCPFVKEVVSRPDALARFKDEPFKQELIER---ISADDTLSLYHSGAFTDLCRGPHVQS 127

Query: 702 TGEI 705
             +I
Sbjct: 128 MRDI 131


>gi|242024338|ref|XP_002432585.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
 gi|212518045|gb|EEB19847.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
          Length = 717

 Score = 44.7 bits (104), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 27/142 (19%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPITSAELKSIEDNVNDI 642
           HS  H+L  AL  + G H+     C  P   +G  +D+ T    +++ +  SIE  +  I
Sbjct: 150 HSTAHILGEALERLYGGHL-----CYGPPIENGFYYDMFTPDSQVSNTDFPSIESLMKKI 204

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVE--------YEDGGVHSSAL 693
           + +  P     M +ED +          KYN  +VR+++ +        Y+ G +    L
Sbjct: 205 VKEKQPFERLEMKKEDLLEM-------FKYNHFKVRILNEKINTPTTTVYKCGSLID--L 255

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G HV +TG+I    I   SS
Sbjct: 256 CRGPHVRNTGKIKAFKITKNSS 277


>gi|294501489|ref|YP_003565189.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351426|gb|ADE71755.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 645

 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 19/139 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  HL+  A+  +      Q G   +  +G  +D+   + IT  +L  IE  +  I+
Sbjct: 74  MRHSTAHLMAQAIKRLYKDTKVQLGVGPVIENGFYYDIDMEESITPEDLGKIEKEMKKIV 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
             N+ +  + ++RE+AI       L  +  D +++  ++          Y+ G      L
Sbjct: 134 NSNIEIERKEVSREEAIQ------LFKEVGDELKLELIDAIPAGEKVTIYQQGEFFD--L 185

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV STG+I    ++S
Sbjct: 186 CRGVHVPSTGKIKEFKLLS 204


>gi|190575251|ref|YP_001973096.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|229558456|sp|B2FN79|SYT_STRMK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190013173|emb|CAQ46806.1| putative threonyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 633

 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPDVKMVIGPVIA-EGFYYDIYSERPFTPDDMAAIEKRMGELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I    A   G  Y  R +  +S + +  G++       +C G HV
Sbjct: 130 QDYDVIKKMTPRAEVIEIFKAR--GEDYKLRLIEDMSEDIQAMGMYYHQEYVDMCRGPHV 187

Query: 700 SST 702
            +T
Sbjct: 188 PNT 190


>gi|170748342|ref|YP_001754602.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|170654864|gb|ACB23919.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 575 IDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D  + R L  I H   H+L  A+  +        G  I  +G  +D     P T  +  
Sbjct: 60  LDRTDPRSLELIRHDCAHVLAEAVQALWPETQVTIGPVIE-NGFYYDFHRETPFTPEDFP 118

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA- 692
            IE  + +IIA++ P    +  R+D    G  A  G  +   +       ED  ++    
Sbjct: 119 KIEAKMREIIARDAPFTKEVWTRDD--VRGLFAGKGEGFKVELVDAIPPGEDLKIYRQGD 176

Query: 693 ---LCGGTHVSSTGEI 705
              LC G H++STG++
Sbjct: 177 WFDLCRGPHMTSTGKV 192


>gi|148230330|ref|NP_001080266.1| alanyl-tRNA synthetase domain containing 1 [Xenopus laevis]
 gi|82176835|sp|Q7ZYJ9|AASDB_XENLA RecName: Full=Alanyl-tRNA editing protein Aarsd1-B; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein
           1-B
 gi|27696840|gb|AAH43754.1| Aarsd1-a protein [Xenopus laevis]
          Length = 412

 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 19/261 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+   T  + E GGQ  D G  IG+   L++       +G    H +     L     ++
Sbjct: 42  VLLKDTVLFPEGGGQPDDRG-FIGEVPVLRVI-----RQGPDAVHFVASP--LDPATEVL 93

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE- 631
           + ID+  R      HS  HL+     ++ G   +          +  D     P+ +AE 
Sbjct: 94  VKIDWNRRFDHMQQHSGQHLVTAIADSLYGFKTTSWDLGRQRSVIELDT----PLVTAEQ 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHS 690
           +++IE   N  I +++PV  R++  +D       +  L   +   VR++ +E  D     
Sbjct: 150 VEAIEKVANQKIREHVPVHVRLITVDDPEFDMVRSRGLPDDHAGPVRIIDIEGVDAN--- 206

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             +C GTHV +  ++ ++ I+     +     +  ++G+R   ++       K+L S LK
Sbjct: 207 --MCCGTHVRNLSDLQMIKILGTEKGKKNKTNLIFLSGERVLKYVSRSYNTEKTLTSLLK 264

Query: 751 VSQGNVVGRVEEIWEEYRKLQ 771
                 +  V+++ +  + LQ
Sbjct: 265 NGPEEHIEAVDKLQKSVKALQ 285


>gi|56707928|ref|YP_169824.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670399|ref|YP_666956.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457008|ref|ZP_03665481.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370416|ref|ZP_04986421.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874733|ref|ZP_05247443.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|73919791|sp|Q5NGL8|SYT_FRATT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123063497|sp|Q14I20|SYT_FRAT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56604420|emb|CAG45450.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320732|emb|CAL08833.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568659|gb|EDN34313.1| hypothetical protein FTBG_00181 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840732|gb|EET19168.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159111|gb|ADA78502.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHS----SALCGGTHV 699
           ++ P+  R++ + +AI    A   G  Y  +V ++ S+  E   +++    S LC G H+
Sbjct: 130 KSAPISYRVVPKAEAIEFFKAQ--GENY--KVEIIDSIADEQMKIYTQDNFSDLCRGPHI 185

Query: 700 SST 702
            +T
Sbjct: 186 PNT 188


>gi|28898540|ref|NP_798145.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365020|ref|ZP_05777591.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus K5030]
 gi|260879585|ref|ZP_05891940.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AN-5034]
 gi|260894940|ref|ZP_05903436.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           Peru-466]
 gi|260901050|ref|ZP_05909445.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AQ4037]
 gi|28806758|dbj|BAC60029.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085987|gb|EFO35682.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           Peru-466]
 gi|308093222|gb|EFO42917.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AN-5034]
 gi|308110720|gb|EFO48260.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AQ4037]
 gi|308111714|gb|EFO49254.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus K5030]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 29/194 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV    T FYAE+GGQ  D G    DGIR+    V     G  + + +  +   R    +
Sbjct: 26  EVELSHTIFYAESGGQESDAGTI--DGIRV----VGAIKSGSRIVYTLERQPTFRVGDQV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID+Q R  L   H A  ++   L T   +++ + G+ I+ D  R D    + IT   
Sbjct: 80  ITQIDWQRRYALMKLHFAAEVILE-LFTQKFANIQKVGAHISADKSRIDFEWPESIT--- 135

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
                           P++     R  A+    A  + + ++D  +       +G   + 
Sbjct: 136 ----------------PLLAEFQQRAQAVIDSDAE-IESAFSDEGQERRYWKVEG--FAQ 176

Query: 692 ALCGGTHVSSTGEI 705
             CGGTH+  T E+
Sbjct: 177 VPCGGTHLKRTSEV 190


>gi|330973951|gb|EGH74017.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|66045402|ref|YP_235243.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|75502334|sp|Q4ZUG7|SYT_PSEU2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|63256109|gb|AAY37205.1| Threonyl-tRNA synthetase, class IIa [Pseudomonas syringae pv.
           syringae B728a]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|297626431|ref|YP_003688194.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922196|emb|CBL56764.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 680

 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 20/149 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H+   AL  I        G  IT DG  +D   ++P+++ +LK +E  +  II 
Sbjct: 70  VRHSAAHVTAQALQDIFPQARLGIGPPIT-DGFYYDF-QTEPLSADDLKQVEKKMQAIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAA--------ALLGTKYNDRVRVVSV------EYE----DG 686
           Q    V R+++ E+A+   A         A  G   +D    V V       Y+    +G
Sbjct: 128 QRQRFVRRVVSEEEALREEANEPYKLELIADKGHPSDDDNSSVEVGGNELTMYDNVTRNG 187

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V    LC G HV +TG I  + +   S+
Sbjct: 188 TVAWRDLCRGPHVPNTGYIKAVALTKTSA 216


>gi|15639823|ref|NP_219273.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026061|ref|YP_001933833.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094415|sp|O83809|SYT_TREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689347|sp|B2S475|SYT_TREPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3323150|gb|AAC65804.1| threonyl-tRNA synthetase (thrS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018636|gb|ACD71254.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 592

 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I   G  +D +  +P+  A+L  IE+ +  I+ 
Sbjct: 22  LRHSLAHVMAEAVQALFPGTKLAVGPPID-YGFYYDFSPPRPLCDADLAPIEEKMRAILR 80

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSS 701
              P V  +++R DA+A         +  +R   +S +      HS A   LC G HV S
Sbjct: 81  AGCPFVKEVVSRPDALARFKDEPFKQELIER---ISADDTLSLYHSGAFTDLCRGPHVQS 137

Query: 702 TGEI 705
             +I
Sbjct: 138 MRDI 141


>gi|330958898|gb|EGH59158.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|330943371|gb|EGH45740.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|71735831|ref|YP_274354.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|123747652|sp|Q48JS3|SYT_PSE14 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71556384|gb|AAZ35595.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|307103531|gb|EFN51790.1| hypothetical protein CHLNCDRAFT_56367 [Chlorella variabilis]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 13/130 (10%)

Query: 583 LSINHSATHLLHHALSTI-LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           L I HS  H++  A+  +  G+ V+      T  G  +D    +P+T  +L  I   +  
Sbjct: 23  LRIRHSCAHIMAMAVQRLHKGAQVTIGP--WTDRGFFYDFDMPQPLTERDLPKIRKEMQR 80

Query: 642 IIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           I+ +NLP V     REDA           ++L       + +  +       H   LC G
Sbjct: 81  ILKKNLPFV-----REDAAGEPYKLEILDSILERDPQAPITIYHIGTPGSEDHWWDLCAG 135

Query: 697 THVSSTGEIM 706
            HV++TG+I+
Sbjct: 136 PHVAATGDIL 145


>gi|330791376|ref|XP_003283769.1| hypothetical protein DICPUDRAFT_85978 [Dictyostelium purpureum]
 gi|325086268|gb|EGC39660.1| hypothetical protein DICPUDRAFT_85978 [Dictyostelium purpureum]
          Length = 248

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 15/133 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVN 640
           SI  SA H+L  A+  IL + ++ +  C      R  V +    KP T+  ++ IED  N
Sbjct: 7   SITDSACHVLKGAIVKILNTPLTISVDCTNSKKGRISVEYDQADKP-TAEIIQQIEDEAN 65

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVS-------VEYEDGGVHSSA 692
            II +NL      +NR++A     + L+   +  D+  V         VE +D  ++   
Sbjct: 66  KIIKENLEFKVCQINRKEAEEKYKSNLVNNTFIYDKFPVPESVTSLTLVELKDWNINC-- 123

Query: 693 LCGGTHVSSTGEI 705
            C  TH+ +TGEI
Sbjct: 124 -CPATHLKTTGEI 135


>gi|269119235|ref|YP_003307412.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613113|gb|ACZ07481.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 47/275 (17%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID +   ++ + HSA H++  A+  +        G  I  +G  +D     P T  +
Sbjct: 59  LITIDSEKGTEI-LRHSAAHIMAQAVQRLFPGTKVTIGPVIE-NGFFYDFDPENPFTEDD 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHS 690
           L  IE+ +  II +N     +    E + A      L  K + ++ ++  +  E   +++
Sbjct: 117 LAKIENEMKKIIKENY----KFERTEMSAADAKKMFLDMKEDYKIEIIDDLGEEKVSIYT 172

Query: 691 ----SALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSH----- 734
                 LC GTH+ STG +    ++S +       S +  ++RI  +     +       
Sbjct: 173 IGEFKDLCRGTHLPSTGYLKAFKLMSTAGAYWRGDSNKKMLQRIYGVAFSAKKELDDYLI 232

Query: 735 LMGQDEKL------KSLASFLKVSQG-----------NVVGRVEEIW-EEYRKLQLIHAK 776
           +M + EK       K L  F     G            V+ +++EIW  E++K      K
Sbjct: 233 MMEEAEKRDHRKLGKQLNLFFLDEHGPGFPFFMPKGMEVINKLQEIWRREHKKAGYKEIK 292

Query: 777 RKLQLNVE--DLSCHKIADVNFMSHI-ISEVDSKE 808
             + L+ E  ++S H     N+  ++  SE+D KE
Sbjct: 293 TPVMLDKELWEISGHWF---NYRENMYTSEIDEKE 324


>gi|147835149|emb|CAN65674.1| hypothetical protein VITISV_002009 [Vitis vinifera]
          Length = 1260

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D    +P+T  
Sbjct: 95  IVLPTNESSERLLRIRHTCAHVMAMAVQKLFPDAKVTIGPWIE-NGFYYDFD-MEPLTDK 152

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGV 688
           +LK I+  ++ II +NLP++   ++R++A     A     K    D ++   +     G 
Sbjct: 153 DLKRIKKEMDRIIGRNLPLIREEVSRDEAQRRIMAVNEPYKMEILDSIQEDPITXYHIGG 212

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLA 746
               LC G HV  TG I     V   S+     R +      QR        +E+LK+  
Sbjct: 213 EWWDLCAGPHVEYTGNICNRKAVELESVAGAYWRGDEKKQMLQRIYGTAWENEEQLKAYL 272

Query: 747 SF 748
            F
Sbjct: 273 HF 274


>gi|99081562|ref|YP_613716.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
 gi|123077585|sp|Q1GFW2|SYT_SILST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|99037842|gb|ABF64454.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 19/131 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDTKVTIGPVIE-NGWYYDFDRAEPFTPEDLGTIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           +  PV T +  RE AI         T  N+  +V  ++          Y  G      LC
Sbjct: 133 KREPVTTEVWEREKAIQ------YYTDNNEPYKVELIDSIPGDEPLRMYWHGDWQD--LC 184

Query: 695 GGTHVSSTGEI 705
            G H+  TG++
Sbjct: 185 RGPHLQHTGQV 195


>gi|302187613|ref|ZP_07264286.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|289673298|ref|ZP_06494188.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
 gi|330898079|gb|EGH29498.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|237801015|ref|ZP_04589476.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023872|gb|EGI03929.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|148548433|ref|YP_001268535.1| threonyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166225483|sp|A5W5E1|SYT_PSEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148512491|gb|ABQ79351.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           putida F1]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEKRMMELIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKMTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|229591579|ref|YP_002873698.1| threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259516637|sp|C3JZN7|SYT_PSEFS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229363445|emb|CAY50645.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  ++ +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPDDMAAIEQRMHALIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|27380648|ref|NP_772177.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27353813|dbj|BAC50802.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 21/132 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+ T+        G  I  +G  +D   ++P T  +  +IE  + +IIA
Sbjct: 139 IRHDCAHVLAEAVQTLWPGTQVTIGPVIE-NGFYYDFFRNEPFTPEDFAAIEKKMREIIA 197

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----------L 693
           ++ P    + +RE              + D+     VE  D    +             L
Sbjct: 198 RDKPFTKEVWDREKT---------KQVFRDKGEAFKVELVDAIPGNEPIKIYYQGDWFDL 248

Query: 694 CGGTHVSSTGEI 705
           C G H++STG++
Sbjct: 249 CRGPHMTSTGKV 260


>gi|330989241|gb|EGH87344.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|320324302|gb|EFW80381.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328576|gb|EFW84578.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330885566|gb|EGH19715.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|289623636|ref|ZP_06456590.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647146|ref|ZP_06478489.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486701|ref|ZP_07004758.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158784|gb|EFH99847.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867695|gb|EGH02404.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|149910913|ref|ZP_01899544.1| threonyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805980|gb|EDM65964.1| threonyl-tRNA synthetase [Moritella sp. PE36]
          Length = 513

 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  I   G  +DV   +PI+ A+L  +E ++N ++ 
Sbjct: 71  LRHSCAHLLGHAIKQLWPNTKMAIGPTID-KGFYYDVEMEEPISEADLAKLEKHMNKLVK 129

Query: 645 QNLPVVTRIMNREDA 659
            N  VV ++++ ++A
Sbjct: 130 TNYQVVKKVVSWQEA 144


>gi|292670652|ref|ZP_06604078.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647679|gb|EFF65651.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 11/138 (7%)

Query: 582 QLSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +L++ H+ +H++  A+  +   S V         +G  +D      +T A+L+ IE  + 
Sbjct: 68  RLALRHTCSHIMAQAVKRLYPESRVQLAIGPAIENGFYYDFDMEHQLTDADLRDIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LC 694
            I+ +NL +  R + R++AI    A   G  Y  +V ++     D  +          LC
Sbjct: 128 KIVKENLKLERREIPRDEAIEYFRAK--GENY--KVELIRDLPADATISIYTQGEFIDLC 183

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG++  L + S
Sbjct: 184 AGPHVMSTGKVKALKLQS 201


>gi|257486172|ref|ZP_05640213.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010502|gb|EGH90558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|198438284|ref|XP_002131660.1| PREDICTED: similar to Alanyl-tRNA synthetase domain-containing
           protein 1 [Ciona intestinalis]
          Length = 409

 Score = 44.3 bits (103), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 113/302 (37%), Gaps = 31/302 (10%)

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E + V C K    + N +  +VK               +  EV  + T  + E GGQ  D
Sbjct: 15  ESKVVACTKVECKVENEIGKLVKT--------------KGYEVELEDTILFPEGGGQPDD 60

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G  I D    ++T    KA    +H    E  +  T   + + +D++ R      HS  
Sbjct: 61  RG-TINDVPVKRVTRKGSKA----LHFVTSELSVGDT---VSMEVDWKRRFDHMQQHSGQ 112

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+     T+ G   +   S      + F    +  +T+ +L  IE   N  I + + V+
Sbjct: 113 HLITAIADTMFGFKTT---SWDLGKSISFIELDTPAVTADQLFQIECCANKSIREGVDVI 169

Query: 651 TRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             +      I     A  L   +   VR+V ++  D     + +C GTHVS+   +  + 
Sbjct: 170 VHVTQVGSPILQSVRARGLPDDHVGDVRIVEMKGID-----TNMCCGTHVSNLSHLQCIK 224

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++S    + G   +  +TG R   +        K L   LK      V  VE   ++ R 
Sbjct: 225 LLSAEKGKKGKTNLCFLTGDRILDYAGKCYANEKELTKQLKCGPEQHVEAVERSMKQLRV 284

Query: 770 LQ 771
            Q
Sbjct: 285 AQ 286


>gi|282898730|ref|ZP_06306717.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196257|gb|EFA71167.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
          Length = 610

 Score = 44.3 bits (103), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 22/162 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+A+H++  A+  +        G  I  +G  +D  + +P +  +LK+I+  +  II
Sbjct: 30  KIRHTASHIMAMAVQKLFPKAQVTIGPWIE-NGFYYDFDNPEPFSDKDLKAIQKEMVKII 88

Query: 644 AQNLPVVTRIMNREDAIA-------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
            + LPV+   ++RE+A              +L     + + +  +     G     LC G
Sbjct: 89  NRKLPVIREEVSREEAKKRIEKIQEPYKLEILADIKQEPITIYHL-----GDEWWDLCAG 143

Query: 697 THVSSTGEIMLLYIVSES---------SIRAGIRRIEAITGQ 729
            H+ +T +I    I  ES           +A ++RI A   Q
Sbjct: 144 PHLENTKDINPKAIELESVAGAYWRGDETKAQLQRIYATAWQ 185


>gi|258543038|ref|YP_003188471.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634116|dbj|BAI00092.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637176|dbj|BAI03145.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640228|dbj|BAI06190.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643285|dbj|BAI09240.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646340|dbj|BAI12288.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649393|dbj|BAI15334.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652379|dbj|BAI18313.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655437|dbj|BAI21364.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   S+P +  +  +IE  + +I+A
Sbjct: 73  IRHDAAHVLAEAVQALYPGTQVTIGPSIE-NGFYYDFYRSEPFSPEDFAAIEAKMREIVA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +  P V  +  R+DAI        G K+   +     E E+  ++       LC G H+ 
Sbjct: 132 KAEPFVREVWKRDDAIRFFEER--GEKFKAELIRDLPEDEEISIYRQGEWLDLCRGPHLR 189

Query: 701 STGEI 705
           +T ++
Sbjct: 190 TTKDV 194


>gi|220912797|ref|YP_002488106.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|254783507|sp|B8H9E8|SYT_ARTCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219859675|gb|ACL40017.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 669

 Score = 44.3 bits (103), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 21/151 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  IT DG  FD   ++P T  +LK++E  +  II 
Sbjct: 70  LRHSTAHVMAQAVQQLRPDAKLGIGPYIT-DGFYFDFDVAEPFTPEDLKTLEKMMQKIIN 128

Query: 645 QNLPVVTRIMNREDAIAS--------------GAAALLGTKYN------DRVRVVSVEYE 684
           QN   V R+++ ++A  +                AA  G   N      D     +VE +
Sbjct: 129 QNQKFVRRVVSEDEAREAMKNEPYKLELLGKKNEAAEAGEGVNVEVGAGDITIYDNVERK 188

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +G      LC G H+ +T  I   + ++ SS
Sbjct: 189 EGTTVWCDLCRGPHLPNTKLISNAFALTRSS 219


>gi|84687895|ref|ZP_01015762.1| threonyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664089|gb|EAQ10586.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 649

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I   G  +D    +P T  +L +IE  + +II 
Sbjct: 74  IRHDAAHIMARAVQALWPDTKVTIGPVIE-HGWYYDFDRDEPFTPEDLGAIEAKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGT 697
               V T + +R DAIA       G  Y  +V +V+   +DG             LC G 
Sbjct: 133 ARDEVRTEVWSRADAIAHYEKT--GEPY--KVELVNAIPDDGQPIRMYWHGDWQDLCRGP 188

Query: 698 HVSSTGEI 705
           H+ +TG++
Sbjct: 189 HLQNTGQV 196


>gi|169634342|ref|YP_001708078.1| threonyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|238688108|sp|B0VKJ4|SYT_ACIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169153134|emb|CAP02213.1| threonyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 12/201 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613
           V+  +V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I 
Sbjct: 40  VNDRLVDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVIE 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D+    P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y 
Sbjct: 100 -EGFYYDIWMPCPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIKVFTDR--GEEYK 156

Query: 674 DRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            R+     E +  G++       +C G HV +T     L     + I     R +A   Q
Sbjct: 157 LRLVEDMPEEKAMGLYYHQEYVDMCRGPHVPNTK---FLKSFKLTKISGAYWRGDAKNEQ 213

Query: 730 RARSHLMGQDEKLKSLASFLK 750
             R +     +K K LA+++K
Sbjct: 214 LQRIYGTAWADK-KQLAAYIK 233


>gi|228941754|ref|ZP_04104301.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974678|ref|ZP_04135244.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981272|ref|ZP_04141572.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778472|gb|EEM26739.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785081|gb|EEM33094.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817966|gb|EEM64044.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942359|gb|AEA18255.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   + + HS  H+L  AL  +      + G   +  +G  +D+   + IT  
Sbjct: 62  IITLDSEDGLYI-LRHSTAHVLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEAITVE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA---ALLGTKYNDRVR--VVSVEYED 685
           + K IE  +  I+ +NL +V   + R +A+         L     ND     V+S+ YE 
Sbjct: 121 DFKKIEKEMQKIVNENLEIVRHEVPRAEALRRFEEIGDELKLDLINDLPEDAVISI-YEQ 179

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ STG+I +  ++S
Sbjct: 180 GEFFD--LCRGVHLPSTGKIKVFKLLS 204


>gi|289608568|emb|CBI60567.1| unnamed protein product [Sordaria macrospora]
          Length = 80

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 168 PCGPCSEIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           PCGP SE+F+D G  +     G P  + EG R++EI N VFM++ + ++
Sbjct: 30  PCGPDSEVFYDLGPELHDPSTGEPHPASEGGRFVEIGNQVFMRYRRTSE 78


>gi|126737580|ref|ZP_01753310.1| hypothetical protein RSK20926_18102 [Roseobacter sp. SK209-2-6]
 gi|126720973|gb|EBA17677.1| hypothetical protein RSK20926_18102 [Roseobacter sp. SK209-2-6]
          Length = 249

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 17/199 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ +Q+ FY   GGQ GD G     G    + +  K AEG  +      + +      + 
Sbjct: 38  LLLEQSLFYPTGGGQPGDAGRLTWQGGSCDVINTVKSAEGHPLLLIAEGQDLPPVGAEVQ 97

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D+  R      H   H   H LS ++   VS  G  I     R D   + P    + 
Sbjct: 98  QELDWARR----YGHMRVHTALHLLSVVIPLEVS--GGSIAAAKGRLDF--NMPEAPEDK 149

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYNDRVRVVSVEYEDG 686
           +++++ +  +I Q+L V    +   DA       L+ T      + + RVR+V +  +  
Sbjct: 150 EALQEALQALIDQDLEVSESWIT--DAELDANPQLVKTMSVSPPRGSGRVRLVRIGTDAE 207

Query: 687 GVHSSALCGGTHVSSTGEI 705
            +     CGGTHV  TGEI
Sbjct: 208 QIDLQP-CGGTHVKRTGEI 225


>gi|126460266|ref|YP_001056544.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum calidifontis JCM 11548]
 gi|126249987|gb|ABO09078.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum calidifontis JCM 11548]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 11/216 (5%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           VEVV D+T F+   GG   DTG  I  G   Q     K  E   V H +      R    
Sbjct: 26  VEVVLDKTAFHDGTGGVQADTGVLIFGGEVYQAVAAHKGGE---VAHVLDRAPAFRPGDV 82

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D++ R +    H+A H+L   L     + ++  G  IT +  R D      + + 
Sbjct: 83  VKGVLDWEKRYRKMRLHTAAHILAAVLYNKYNALIT--GGDITHEYARDDFNIEGDMAAV 140

Query: 631 ELKSIEDNV---NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             K+ E+ V   N I  + + V    + RE+A+       L  K    + ++ +  E  G
Sbjct: 141 R-KAFEEAVAEANAIAQRGIDVKVYWLPREEALKIPGVVKLAEKMPPNIPILRI-VEIPG 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V   A  GG HV +T EI  + I+   +   G +R+
Sbjct: 199 VDIQA-DGGPHVRNTREIGTIKILKIENRGKGKKRL 233


>gi|242046134|ref|XP_002460938.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
 gi|241924315|gb|EER97459.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R  L  N S+  LL    +  +G  +         +G  +D    +P+T  +LK I+ 
Sbjct: 80  EERVVLPTNESSETLLRIRHTVTIGPWIE--------NGFYYDFD-MEPLTDKDLKKIKK 130

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSAL 693
            ++ II QNLP+V   ++RE+A     A  L   Y     + ++   +     G     L
Sbjct: 131 EMDRIIRQNLPLVREEVSREEAQKRIEA--LNEPYKLEILESIKEEPITIYHIGEEWWDL 188

Query: 694 CGGTHVSSTGEI 705
           C G HV STG+I
Sbjct: 189 CAGPHVESTGKI 200


>gi|220961898|gb|ACL93386.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
          Length = 165

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D    S  I++ +L  IE+ +  I+
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNQSGQISNEDLPRIEEEMKKIV 62

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    +DGG+          LC
Sbjct: 63  KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDDGGLTIYRQGEYVDLC 114

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 115 RGPHVPSTGRIQIFHLLN 132


>gi|90417311|ref|ZP_01225237.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90330896|gb|EAS46159.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 7/146 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           I++ + +L +  D  +     I HS+ HLL  A+  +  +     G  I  DG  +D   
Sbjct: 50  IMQEDSTLAIVTDRSDEALDIIRHSSAHLLAMAVKQLFPAAQVTIGPVIE-DGFYYDFAF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  +L++IE  + +++  +  +     +R++A+    +  +G +Y   +       
Sbjct: 109 ERAFTPEDLEAIEARMTELVKADHGIAREEWDRDEAVEFFKS--IGEEYKAEIIASIPAG 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEI 705
           E  G++       LC G HV ST ++
Sbjct: 167 EPIGLYRQGDFIDLCRGPHVPSTAKL 192


>gi|119963884|ref|YP_948047.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|166223318|sp|A1R735|SYT_ARTAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119950743|gb|ABM09654.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 669

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 21/151 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  IT DG  FD   + P T  +L+++E  +  II 
Sbjct: 70  LRHSTAHVMAQAVQQLRPEAKLGIGPYIT-DGFYFDFDVADPFTPEDLRTLEKMMQKIIN 128

Query: 645 QNLPVVTRIMNREDAIASGAA-----ALLGTKYN--DRVRVVSVEYEDGGVH-------- 689
           QN   V R++  E+A  + A       LLG K +  D    V+VE   G +         
Sbjct: 129 QNQKFVRRVVTEEEAREAMANEPYKLELLGKKNDASDAAEGVNVEVGAGDITIYDNVDRK 188

Query: 690 -----SSALCGGTHVSSTGEIMLLYIVSESS 715
                   LC G H+ +T  I   + ++ SS
Sbjct: 189 SGESIWCDLCRGPHLQNTKIISNAFALTRSS 219


>gi|78044971|ref|YP_360408.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770579|sp|Q3ABS6|SYT_CARHZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77997086|gb|ABB15985.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS+ HL+  A+  +        G  I  DG  +D    +  +  +L+ IE  +  I+ 
Sbjct: 71  FRHSSAHLMAQAVKRLFPKTKLAIGPAIK-DGFYYDFDPEESFSPEDLEKIEAEMEKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHV 699
           ++LP+   +++R++AI        G  Y      D    V + +   G     LC G HV
Sbjct: 130 EDLPIERFVLSRDEAIKFFEEK--GEIYKVELVKDIPEGVEISFYRQGEFVD-LCTGPHV 186

Query: 700 SSTG 703
            STG
Sbjct: 187 PSTG 190


>gi|145219006|ref|YP_001129715.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Prosthecochloris vibrioformis DSM 265]
 gi|189083618|sp|A4SCK4|SYT_PROVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145205170|gb|ABP36213.1| Ser-tRNA(Thr) hydrolase [Chlorobium phaeovibrioides DSM 265]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D    +++   HSA+H++ HA+  +        G  I   G  +D+      T  +
Sbjct: 68  IITFDSPEGKEI-FWHSASHIMAHAIEELFPGSKFGAGPAIE-QGFYYDIASEHRFTEED 125

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAI-------ASGAAALLGTKYNDRVRVVSVEYE 684
           L++IE+ +  I  +++P+V   M R  AI              + T        VS+ Y 
Sbjct: 126 LRAIEERMLLIAGRDIPIVREEMPRIQAIEYFRTVREDPYKVEILTDTLKETETVSL-YH 184

Query: 685 DGGVHSSALCGGTHVSSTGEI--MLLYIVSESSIRA-----GIRRIEAI---TGQRARSH 734
           +GG   + LC G H+ ST  +  + L+ +S S  R       ++RI  I   T +  ++H
Sbjct: 185 EGGF--TDLCSGPHLFSTAALKAVKLFNISASYWRGDQSRESMQRIYGIAFPTEKLLKAH 242

Query: 735 LMGQDEKLK 743
           L   +E  K
Sbjct: 243 LSALEEAKK 251


>gi|297701048|ref|XP_002827539.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like, partial [Pongo
           abelii]
          Length = 307

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYED 685
           +T+ ++ +IE +VN+ I   LPV  R ++ +D  +       L   +   +RVVS++  D
Sbjct: 35  MTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVSIKGVD 94

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S +C GTHVS+  ++ ++ I+     +     +  + G R    +       K+L
Sbjct: 95  -----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGTEKAL 149

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCH--------------- 789
            + LK    + V  V+++    + LQ +    +  LN + DL+ H               
Sbjct: 150 TALLKCGAEDHVEAVKKLQNSTKILQKLPYPFQNNLNLLRDLAVHIARRLRNSPDWGGVV 209

Query: 790 ----KIADVNFMSHIISEVDSKE 808
               K  D  FM+ I +E+ S+E
Sbjct: 210 VLHRKEGDSEFMNIIANEIGSEE 232


>gi|262274428|ref|ZP_06052239.1| alanyl-tRNA synthetase domain protein [Grimontia hollisae CIP
           101886]
 gi|262220991|gb|EEY72305.1| alanyl-tRNA synthetase domain protein [Grimontia hollisae CIP
           101886]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 28/213 (13%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           V V  D + FY + GGQ  D G    +G   ++  V+   EGI     ++E   L  E  
Sbjct: 29  VAVYCDSSIFYPQGGGQPCDLGSLEINGTAYRVYHVETTEEGIA---HVLESHPLLLECG 85

Query: 569 -MSLVLTIDYQNRRQLSINHSATHLLHHA-------LSTILGSHVSQNGSCITPDGLRFD 620
            +  +  ID Q R   + +H+A HL+ H        LS   G H   +      D  R +
Sbjct: 86  GLPCIQRIDIQRRLVNAKSHTAGHLISHIIEEMDDNLSPAKGHHYPDDSYIELIDSERTN 145

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRV 678
            T S  + + +++S        +    P   + +  + A       LL     ++  +R+
Sbjct: 146 DTFSMELINKKIQS--------LVNQAPRTIQSIELDLAEVQSLRPLLSKFIPHSTHIRM 197

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +++   DG   +   CGGTHV+ST E+  L + 
Sbjct: 198 IAI---DG--FTPVPCGGTHVASTSELTGLQVT 225


>gi|260424668|ref|ZP_05732876.2| threonine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402758|gb|EEW96305.1| threonine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 647

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            ++ H+A H++  A+  +        G  I  DG  +D+      +  +  +IE  +  I
Sbjct: 81  FTLRHTAAHVMAQAIQHLYPGTKFAIGPAID-DGFYYDLESDHVFSQEDFAAIEKEMAKI 139

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHS------SALCG 695
              NLP+  +I++R +A+         +K  D +V ++    ED  + +      + LC 
Sbjct: 140 AKANLPIEKKILSRNEAL-----EFFRSKNQDYKVILIQDLPEDAIISTYTQGDFTDLCR 194

Query: 696 GTHVSSTGEIMLLYIVS 712
           G HV STG++ +  +++
Sbjct: 195 GPHVRSTGKLKVFKLMA 211


>gi|331269136|ref|YP_004395628.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329125686|gb|AEB75631.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 28/184 (15%)

Query: 544 TDVQKKAEGIFVHHAIVERG----ILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALS 598
           T ++KKA G  ++    E+G    I+  + SL +LT + Q  +  ++ H+A+H+L  A+ 
Sbjct: 29  TSLRKKALGAKING---EKGELMDIINDDCSLEILTFEDQEGKD-TLRHTASHILAQAVK 84

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +        G  I  +G  +D       T   L+ IE  +N I+ +NL +    + R++
Sbjct: 85  RLYPDVKLAIGPSIE-NGFYYDFDAEFSFTPEILEKIEKEMNKIVKENLELKKFTLPRDE 143

Query: 659 AIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLL 708
           AI          + N+  ++  +E          YE+G      LC G HV ST E+  +
Sbjct: 144 AIK------FMKERNEDYKIELIEDLPEDAVISFYEEGEF--VDLCAGPHVPSTKEVKAI 195

Query: 709 YIVS 712
            ++S
Sbjct: 196 KLLS 199


>gi|120601271|ref|YP_965671.1| threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
 gi|120561500|gb|ABM27244.1| Threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
          Length = 218

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 27/224 (12%)

Query: 502 VEEAVSGQKVEVV-FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            E  V+G + +V+  D+T  +A +GGQ  D G   G  I   +       + + +++ + 
Sbjct: 16  TEAVVTGVENDVITLDRTVAFAFSGGQESDRGTIAGHAILKAVKG--SPCDPLELYYTLP 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     + + ID + RR+L   H A  L+   ++     H  + G+ I+PD  R D
Sbjct: 74  AGHGLTPGSRVSVCIDGEARRRLVRLHFAAELVLELVNRHY-DHPEKTGAHISPDKARLD 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 I++A    + + ++ ++A +LP+ +   +                 +  VR  S
Sbjct: 133 FAWQGNISTA-FPMLHERLSALVAADLPIESSFEDE----------------STEVRYWS 175

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +E       +   CGGTH +STG +  + +  E+   +G  RIE
Sbjct: 176 IEG-----FARVRCGGTHPASTGAVGRIRLRRENP-GSGRERIE 213


>gi|163846770|ref|YP_001634814.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222524584|ref|YP_002569055.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|163668059|gb|ABY34425.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222448463|gb|ACM52729.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 594

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D  +     + HS  H++  A+  I        G  I  +G  +D    +P+T  +L
Sbjct: 1   MPVDPNSDPYYRLRHSLAHVMAQAVLEIFPDAKIAIGPPIE-NGFYYDFDLPRPLTPEDL 59

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDA----------------IASGAAALLGTKYNDRV 676
             IE  +  IIA N P + R +  E+A                +A G      T + D  
Sbjct: 60  SEIERRMKRIIAGNHPFIYREVTAEEARQIFANQPYKLELIEGLAKGLDEYGETHHGD-- 117

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            V+S   +D       LC G H++ TGEI
Sbjct: 118 TVISTYRQDT---FEDLCRGPHLNHTGEI 143


>gi|326934189|ref|XP_003213176.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like [Meleagris
           gallopavo]
          Length = 475

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 6/138 (4%)

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSVEYED 685
           +T+ +++++E +VN+ I + +PV  R +  +D+ + +  +  L   +   VRVV +E   
Sbjct: 209 MTAEQMEALEQSVNEKIRERIPVTVRELAADDSEVETVESRGLPGDHTGPVRVVDIE--- 265

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G+ S+ +C GTHVS+  ++ ++ ++     +     +  + G R    +       K+L
Sbjct: 266 -GIDSN-MCCGTHVSNLSDLQVIKLLCTEKGKKNKTNLVFLAGNRVLKSVEQSHRTEKAL 323

Query: 746 ASFLKVSQGNVVGRVEEI 763
            S LK   G  V  V+ +
Sbjct: 324 TSLLKNGPGEHVEAVKRL 341


>gi|167629857|ref|YP_001680356.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|167592597|gb|ABZ84345.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D    R++   HS++HLL  A+           G  I  +G  +D       T  +
Sbjct: 62  ILTFDDPEGREV-YRHSSSHLLAQAVQRRFPGTKLGIGPAIE-NGFYYDFDAEHKFTPED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L++IE  +  I+  + P+  + ++RE+AI        G  Y  +V +V    ED  +   
Sbjct: 120 LEAIEKEMAHIVKADYPITRQEVSREEAIRFFEER--GEMY--KVELVKDLPEDAVISMY 175

Query: 692 A------LCGGTHVSSTGEI 705
           +      LC G H+ STG+I
Sbjct: 176 SQGDFVDLCAGPHLPSTGQI 195


>gi|75812508|ref|YP_320127.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
 gi|75705264|gb|ABA24938.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
          Length = 614

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 40/198 (20%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I H+  H++  A+  +        G  +T +G  +D      IT  +L  IED +  I
Sbjct: 21  LRIRHTCAHIMAMAVKKVFPGTKVATGP-VTENGFYYDFDCPVSITPDDLSKIEDQMRRI 79

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRV-------RVVSVEYEDGGVHSS 691
           I  NLP++   + RE+       A L   Y     DR+       R      + G   SS
Sbjct: 80  IKANLPIIREEVQREE--IRTEIAQLNESYKLEILDRIPEGETITRYFIGSPDTGKPESS 137

Query: 692 A--------------LCGGTHVSSTGEI-----MLLYIVSE----SSIRAGIRRIEAI-- 726
                          LC G H++ TGEI      LL I          +A ++RI  I  
Sbjct: 138 LFITDIQPASNYWWDLCAGPHINFTGEIEPDAFKLLNIAGAYWQGDETKAQLQRIYGIAW 197

Query: 727 -TGQRARSHLMGQDEKLK 743
            T ++ +++L  ++E L+
Sbjct: 198 ETKEQLQAYLKQREEALR 215


>gi|327310448|ref|YP_004337345.1| Threonyl/alanyl tRNA synthetase, SAD [Thermoproteus uzoniensis
           768-20]
 gi|326946927|gb|AEA12033.1| Threonyl/alanyl tRNA synthetase, SAD [Thermoproteus uzoniensis
           768-20]
          Length = 232

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +VV D+T F+   GG   DTG     G R +   V+   EG  V H +  +  L+    +
Sbjct: 22  KVVLDRTAFHDGEGGVQADTGYLEAAGARYR---VKAGREGDEVVHVVEGQHSLKPGDVV 78

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D++ R +    H+A H+L   L     + ++  G  ITP+  R D +    + +  
Sbjct: 79  KGVLDWEPRYRKMRLHTAAHMLSAVLYRKHNALIT--GGEITPEYARDDFSIEGDMNTVR 136

Query: 632 LKSIED---NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            ++ E+    VN++ A+ + V    + RE+A+       L  +    + V+ +  E  GV
Sbjct: 137 -RAFEEAVAEVNELAARGIEVKVYWLPREEALKIPGITKLAERAPPNIPVLRI-VEIPGV 194

Query: 689 HSSALCGGTHVSSTGEI 705
              A  GG HV +T EI
Sbjct: 195 DVQA-DGGPHVRNTAEI 210


>gi|262052254|ref|ZP_06024459.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
 gi|259159855|gb|EEW44894.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|85716379|ref|ZP_01047351.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696736|gb|EAQ34622.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 679

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 25/134 (18%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+ T+        G  I  +G  +D   ++P +  +  +IE  + +IIA
Sbjct: 96  IRHDAAHVLAEAVQTLWPGTQVTIGPVIE-NGFYYDFFRNEPFSVEDFAAIEKKMREIIA 154

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK--YNDRVRVVSVEYEDGGVHSSA---------- 692
           ++ P    + +RE            TK  + D+     VE  D    +            
Sbjct: 155 RDKPFTKDVWDREK-----------TKQVFRDKGETFKVELVDAIPGNEPIKIYYQGDWF 203

Query: 693 -LCGGTHVSSTGEI 705
            LC G H++STG+I
Sbjct: 204 DLCRGPHMTSTGKI 217


>gi|256751279|ref|ZP_05492159.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749834|gb|EEU62858.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTDRPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDGG 687
            ++IE  +N II ++  +   ++ +++AI      G    +              Y+ G 
Sbjct: 116 FEAIEQEMNKIIKEDYKLERFVLPKDEAIKLMEEKGEPYKVELIEEIPEGEEISFYKQGE 175

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
              + LC G H+ STG +  + ++S
Sbjct: 176 F--TDLCAGPHLMSTGMVKTIKLLS 198


>gi|329115645|ref|ZP_08244367.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326695073|gb|EGE46792.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   S+P +  +  +IE  + +I+A
Sbjct: 73  IRHDAAHVLAEAVQALYPGTQVTIGPSIE-NGFYYDFYRSEPFSPEDFAAIEAKMREIVA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +  P V  +  R+DAI        G K+   +     E E+  ++       LC G H+ 
Sbjct: 132 KAEPFVREVWKRDDAIQFFEDR--GEKFKAELIRDLPEDEEISIYRQGEWLDLCRGPHLR 189

Query: 701 STGEI 705
           +T ++
Sbjct: 190 TTKDV 194


>gi|26989188|ref|NP_744613.1| threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|38258320|sp|Q88K27|SYT_PSEPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24984027|gb|AAN68077.1|AE016439_12 threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|313499446|gb|ADR60812.1| ThrS [Pseudomonas putida BIRD-1]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEKRMMELIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKMTPRAEVIDVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|253682125|ref|ZP_04862922.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561837|gb|EES91289.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 28/184 (15%)

Query: 544 TDVQKKAEGIFVHHAIVERG----ILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALS 598
           T ++KKA G  ++    E+G    ++  + SL +LT + Q  +  ++ H+A+H+L  A+ 
Sbjct: 29  TSLRKKALGAKING---EKGELMDVINDDCSLEILTFEDQEGKD-TLRHTASHILAQAVK 84

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +        G  I  +G  +D       T   L+ IE  +N I+ +NL +    + R++
Sbjct: 85  RLYPDVKLAIGPSIE-NGFYYDFDAEFSFTPEILEKIEKEMNKIVKENLELKKFTLPRDE 143

Query: 659 AIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLL 708
           AI          + N+  +V  +E          YE+G      LC G HV ST E+  +
Sbjct: 144 AIK------FMKERNEDYKVELIEDLPEDAVISFYEEGEF--VDLCAGPHVPSTKEVKAI 195

Query: 709 YIVS 712
            ++S
Sbjct: 196 KLLS 199


>gi|312794079|ref|YP_004027002.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181219|gb|ADQ41389.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 647

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 20/190 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II ++
Sbjct: 75  HTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDVEESITMELLEKIEEEMQKIIKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           L +    ++R++A+        G  Y     ND     ++ +   G     LC G H+ S
Sbjct: 135 LKIERFELSRKEAVKLMQEK--GENYKVELINDIPEGETISFYRQGEFVD-LCTGPHLPS 191

Query: 702 TGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           TG +    ++S +       S    ++RI  I+ ++ +S L   DE LK L    K    
Sbjct: 192 TGRVKAFKLLSVAGAYWRGNSKNKMLQRIYGISFEK-KSEL---DEYLKKLEE-AKKRDH 246

Query: 755 NVVGRVEEIW 764
           N +GR  EI+
Sbjct: 247 NRIGRELEIF 256


>gi|302671729|ref|YP_003831689.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
 gi|302396202|gb|ADL35107.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H+L  A+  + G  V         DG  +D    K +T  + K+IED + +II + 
Sbjct: 19  HSMAHVLAKAVIELYGKEVQYAIGPQIDDGCYYDFVLPKAVTQDDFKTIEDKMREIIKRR 78

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-ND--RVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
                + +++ +A+         T+  ND     V++V Y   G     LC G HV ++ 
Sbjct: 79  EDWTRKEVSKSEALEMFKDQKFKTELINDLPEDEVITVYY--TGDDYVDLCRGPHVDNSQ 136

Query: 704 EIM 706
           E+M
Sbjct: 137 ELM 139


>gi|73662391|ref|YP_301172.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761534|sp|Q49YB4|SYT_STAS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72494906|dbj|BAE18227.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D    + I+S + + IE  +  I  
Sbjct: 73  LRHSTAHLMAQALKRLYGEVHFGVGPVIE-GGFYYDFDMEESISSDDFEKIEKTMKQIAN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N P+  ++++R +A     A      Y   +     E E+  +++    + LC G HV 
Sbjct: 132 ENYPIERKVVSRNEA----KAFFSDDPYKQELIDAIPEDENVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STSKIKEFKLLS 199


>gi|255280775|ref|ZP_05345330.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255268712|gb|EET61917.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 642

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 19/139 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H++  A+  +        G  I  DG  +D+    P+T+ +L+ IE  +  I+
Sbjct: 69  AFRHTTSHIMAQAIKRLYPDVKLAIGPSIA-DGFYYDIDSDTPLTAEDLEKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSAL 693
            + LP+      R++AIA         + N+  +V  +E          Y+ G      L
Sbjct: 128 KEALPITRFTKPRDEAIA------YFKEKNEPYKVELIEDLPEDAEISFYQQG--EFVDL 179

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G H+ ST  +    + S
Sbjct: 180 CAGPHLMSTKPVKAFKLTS 198


>gi|149190692|ref|ZP_01868959.1| putative alanyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835458|gb|EDL52428.1| putative alanyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 43/206 (20%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           + G  VE   ++T FYAEAGGQ  D+G  I D   LQ T  Q  +  I+   ++ +  + 
Sbjct: 22  IEGNNVE--LNKTIFYAEAGGQESDSG-TINDVSVLQAT--QNGSRIIYTLASLPDFEVG 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHL----LHHALSTI--LGSHVSQNGSCITPDGLRF 619
            T   +V  ID++ R  L   H A  +    L+   S I  +G+H++Q+ S       R 
Sbjct: 77  ET---VVTCIDWERRYSLMKLHFAAEVVLEKLYQRCSGIVRIGAHIAQDKS-------RI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV   + +T+  LK +E     +I  +  +++   ++E               N+R R  
Sbjct: 127 DVEWPENLTTL-LKEVETKAQLLIDSDARIISDFSDKE---------------NER-RYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI 705
            VE       +   C GTH++ T E+
Sbjct: 170 KVEG-----FTQVPCCGTHLNRTSEV 190


>gi|55820651|ref|YP_139093.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822542|ref|YP_140983.1| threonyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|116627458|ref|YP_820077.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|73919831|sp|Q5M0T3|SYT_STRT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919832|sp|Q5M5B9|SYT_STRT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122267944|sp|Q03LP1|SYT_STRTD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|55736636|gb|AAV60278.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus LMG 18311]
 gi|55738527|gb|AAV62168.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus CNRZ1066]
 gi|116100735|gb|ABJ65881.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Streptococcus
           thermophilus LMD-9]
 gi|312277977|gb|ADQ62634.1| Threonyl-tRNA synthetase ThrS [Streptococcus thermophilus ND03]
          Length = 648

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D    +  I++ 
Sbjct: 59  IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNQAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGG 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  +E    +DGG
Sbjct: 117 DLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDDGG 168

Query: 688 V------HSSALCGGTHVSSTGEIMLLYIVS 712
           +          LC G HV STG I + ++++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|302035784|ref|YP_003796106.1| threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300603848|emb|CBK40180.1| Threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 12/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            LT +    R++   HS+TH++  A+  +  +     G  +  DG  +D    +P T  +
Sbjct: 63  ALTFESPEGREV-YRHSSTHIMAQAVKEVFPTAQLTIGPALD-DGFYYDFAFDRPFTPED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAI------ASGAAALLGTKYNDRVRVVSVEYED 685
           L+ IE    +I+ + L V    ++++DAI        G    L   ++D    +S+ Y  
Sbjct: 121 LEKIEARAIEIMKRGLTVTRSELSKQDAIKFFQERGEGYKVELINSFDD-ASPISL-YRQ 178

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVS 712
           G      LC G H+ +TG +    ++S
Sbjct: 179 G--EFVDLCRGPHLPTTGYVGAFKLLS 203


>gi|298694953|gb|ADI98175.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323440773|gb|EGA98482.1| threonyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442928|gb|EGB00551.1| threonyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|297538938|ref|YP_003674707.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258285|gb|ADI30130.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +  T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVIE-NGFFYDFSYKRAFTPEDLIAIEKKMVELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++  V  +++ R++A+    +  +G  Y   +       ED  +++    + LC G HV 
Sbjct: 130 KDEQVTRKVLPRDEAVDYFKS--IGEHYKAEIIASIPAGEDVSLYTEGNFTDLCRGPHVP 187

Query: 701 STGEI 705
           +TG++
Sbjct: 188 NTGKL 192


>gi|326789266|ref|YP_004307087.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326540030|gb|ADZ81889.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H+L  A+  +  +     G  I  DG  +D       T+A L  IE  +  I+
Sbjct: 23  AFRHTASHVLAQAVKRLYPTTKCAIGPVIE-DGFYYDFEFDFEFTAANLVEIEQEMRKIV 81

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            ++L +    +NRE+A+A         K    ND      + +   G +   LC G HV+
Sbjct: 82  KESLSLQRYTLNREEALALMKEKNEPYKIELINDLPEDAQLSFYQQGDYLE-LCAGPHVT 140

Query: 701 STGEI 705
           +T  I
Sbjct: 141 NTSLI 145


>gi|167040680|ref|YP_001663665.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307724045|ref|YP_003903796.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|166854920|gb|ABY93329.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307581106|gb|ADN54505.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTDRPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDGG 687
            ++IE  +N II ++  +   ++ +++AI      G    +              Y+ G 
Sbjct: 116 FEAIEQEMNKIIKEDYKLERFVLPKDEAIKLMEEKGEPYKVELIEEIPEGEEISFYKQGE 175

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
              + LC G H+ STG +  + ++S
Sbjct: 176 F--TDLCAGPHLMSTGMVKTIKLLS 198


>gi|115375671|ref|ZP_01462926.1| alanyl-tRNA synthetase, truncated [Stigmatella aurantiaca DW4/3-1]
 gi|115367319|gb|EAU66299.1| alanyl-tRNA synthetase, truncated [Stigmatella aurantiaca DW4/3-1]
          Length = 325

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 19/230 (8%)

Query: 543 ITDVQKKAEGIFVHHAI--VERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + DVQ    G+ VHH +   E G L      L   ID   RR     H+  H+L  AL  
Sbjct: 12  VRDVQVDDAGL-VHHVLELSEGGALPEVGAELPGEIDRVRRRLHMALHTGQHMLSRALVD 70

Query: 600 ILGSHV--SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
           +  +H   S+ G  +    +  DV   + +  AE     + VN +I  ++ +       E
Sbjct: 71  VANAHTVSSRLGETLCTIDVDLDVLDERKVAEAE-----EFVNAVIEDDVAIRAFFPTPE 125

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +  A         K  + +RVV ++  D      + CGGTH + + ++ ++ ++     +
Sbjct: 126 ELAA--LPLRRQPKVTENIRVVQIDGFD-----VSPCGGTHCTRSAQVGMIRVLGVERNK 178

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
            G  R+    G+RARS L  +   L+ L+       G V   ++++  E 
Sbjct: 179 -GKGRVLFSAGRRARSELWAEAGTLRGLSRAFTCGPGEVPTSIDKLRREL 227


>gi|294677983|ref|YP_003578598.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476803|gb|ADE86191.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 648

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 21/133 (15%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPD-----------GLRFDVTHSKPITSAELKSIE 636
            A  L+ H L+ I+   V +    I PD           G  +D   ++P T  +L  IE
Sbjct: 69  PALELIRHDLAHIMARAVQE----IWPDVKVTIGPVRDAGWFYDFDRAEPFTPEDLGQIE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSA 692
             +  II    PV T + +REDAIA    +    K     R+   E    Y  G      
Sbjct: 125 ARMKQIINAREPVRTEVWSREDAIAHYEKSNEPYKVELVNRIPEGEDLRMYWHGNWQD-- 182

Query: 693 LCGGTHVSSTGEI 705
           LC G H+  TG++
Sbjct: 183 LCRGPHLQHTGQV 195


>gi|167034477|ref|YP_001669708.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083619|sp|B0KKR8|SYT_PSEPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166860965|gb|ABY99372.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEKRMMELIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKMTPRAEVIDVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|21283355|ref|NP_646443.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483925|ref|YP_041149.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486509|ref|YP_043730.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650554|ref|YP_186567.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161367|ref|YP_494324.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|148268163|ref|YP_001247106.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394230|ref|YP_001316905.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221788|ref|YP_001332610.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509896|ref|YP_001575555.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142567|ref|ZP_03567060.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317174|ref|ZP_04840387.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732334|ref|ZP_04866499.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734533|ref|ZP_04868698.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257425798|ref|ZP_05602222.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428464|ref|ZP_05604862.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431098|ref|ZP_05607475.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433781|ref|ZP_05610139.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436697|ref|ZP_05612741.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257794068|ref|ZP_05643047.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258415772|ref|ZP_05682043.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421991|ref|ZP_05684911.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258424099|ref|ZP_05686981.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|258438251|ref|ZP_05689535.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443709|ref|ZP_05692048.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258445920|ref|ZP_05694096.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448399|ref|ZP_05696516.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258451803|ref|ZP_05699825.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258454120|ref|ZP_05702091.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|269203301|ref|YP_003282570.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893178|ref|ZP_06301412.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904254|ref|ZP_06312142.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282908994|ref|ZP_06316812.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911310|ref|ZP_06319112.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914479|ref|ZP_06322265.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919448|ref|ZP_06327183.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920223|ref|ZP_06327948.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924825|ref|ZP_06332491.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282927813|ref|ZP_06335424.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283958434|ref|ZP_06375885.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024731|ref|ZP_06379129.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503557|ref|ZP_06667404.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510572|ref|ZP_06669277.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293537114|ref|ZP_06671794.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848704|ref|ZP_06789450.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295405993|ref|ZP_06815801.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428254|ref|ZP_06820883.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296274890|ref|ZP_06857397.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207604|ref|ZP_06924039.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245081|ref|ZP_06928958.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297590783|ref|ZP_06949421.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911686|ref|ZP_07129130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380726|ref|ZP_07363395.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|38258392|sp|Q8NW68|SYT_STAAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749381|sp|Q6G8P3|SYT_STAAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749410|sp|Q6GG23|SYT_STAAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71153575|sp|Q5HF90|SYT_STAAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123735974|sp|Q2FG54|SYT_STAA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|172048941|sp|A6QHL6|SYT_STAAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083625|sp|A6U2F0|SYT_STAA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083626|sp|A5ITK7|SYT_STAA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083627|sp|A8Z2J8|SYT_STAAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38492559|pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492560|pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492561|pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|38492562|pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|21204795|dbj|BAB95491.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242054|emb|CAG40753.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244952|emb|CAG43413.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284740|gb|AAW36834.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127341|gb|ABD21855.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|147741232|gb|ABQ49530.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946682|gb|ABR52618.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374588|dbj|BAF67848.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368705|gb|ABX29676.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723934|gb|EES92663.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727474|gb|EES96203.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271492|gb|EEV03638.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275305|gb|EEV06792.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278046|gb|EEV08694.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281874|gb|EEV12011.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284048|gb|EEV14171.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257788040|gb|EEV26380.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839365|gb|EEV63838.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842035|gb|EEV66464.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257845720|gb|EEV69752.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257848295|gb|EEV72286.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851115|gb|EEV75058.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257855162|gb|EEV78101.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858367|gb|EEV81252.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257860515|gb|EEV83341.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257863572|gb|EEV86329.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|262075591|gb|ACY11564.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941163|emb|CBI49550.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313191|gb|EFB43587.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317258|gb|EFB47632.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321660|gb|EFB51985.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325005|gb|EFB55315.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327258|gb|EFB57553.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282590323|gb|EFB95402.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594571|gb|EFB99556.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595872|gb|EFC00836.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764496|gb|EFC04622.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283790583|gb|EFC29400.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817366|gb|ADC37853.1| Threonyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290919959|gb|EFD97027.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095223|gb|EFE25488.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466463|gb|EFF08984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824730|gb|EFG41153.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968990|gb|EFG45011.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295127654|gb|EFG57291.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887621|gb|EFH26519.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178161|gb|EFH37409.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297575669|gb|EFH94385.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300887107|gb|EFK82308.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333348|gb|ADL23541.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751509|gb|ADL65686.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340725|gb|EFM06656.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437859|gb|ADQ76930.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830061|emb|CBX34903.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130684|gb|EFT86670.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195587|gb|EFU25974.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198621|gb|EFU28949.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140439|gb|EFW32293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143977|gb|EFW35746.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314355|gb|AEB88768.1| Threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727674|gb|EGG64130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|75676225|ref|YP_318646.1| threonyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74421095|gb|ABA05294.1| Ser-tRNA(Thr) hydrolase [Nitrobacter winogradskyi Nb-255]
          Length = 686

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+ T+        G  I  +G  +D   ++P +  +  +IE  + +IIA
Sbjct: 95  IRHDAAHVLAEAVQTLWPGTQVTIGPVIE-NGFYYDFFRNEPFSVEDFAAIEKKMREIIA 153

Query: 645 QNLPVVTRIMNREDAI--------ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           ++ P    + +RE           A     +     N+ +R+    Y  G      LC G
Sbjct: 154 RDQPFTKDVWDREKTKQVFRDKGEAFKVELVDAIPGNEPIRI----YYQGDWFD--LCRG 207

Query: 697 THVSSTGEI 705
            H++STG+I
Sbjct: 208 PHMTSTGKI 216


>gi|307945488|ref|ZP_07660824.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771361|gb|EFO30586.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 16/133 (12%)

Query: 585 INHSATHLLHHALSTIL-GSHVS-----QNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           I H A H+L  A+  +  G+ V+     +NG       +  D   + P  + +L+ IE  
Sbjct: 71  IRHDAAHVLAEAVQELWPGTQVTIGPVIENGFYYDFKRVHPDTKENWPFATDDLEVIEKK 130

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------ 692
           + +II +N P    + +RE+  A    A +G  Y  +V +V    ED  +          
Sbjct: 131 MREIIQRNQPFTKELWSREE--AKKVFAEMGEDY--KVELVDAIPEDQDIKIYKQGDWFD 186

Query: 693 LCGGTHVSSTGEI 705
           LC G H+ +TG I
Sbjct: 187 LCRGPHMDATGRI 199


>gi|257076511|ref|ZP_05570872.1| threonyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 668

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HLL +A+  +    +  N S  + D   +D  + KP++  +   IE+ + +++  N
Sbjct: 65  HSTAHLLANAIVDLYPDALP-NTSNESEDTFYYDF-NMKPVSIEDFPLIEEKMQELVQAN 122

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVH----SSALCGGTHVSS 701
           +P++ +I+ + + +   +      KY  D++     + E+  ++        C G HV S
Sbjct: 123 IPIMRKILPKNEILKEFSY----NKYKLDKINENVPDGENSSIYIQGNYKEFCRGPHVPS 178

Query: 702 TGEIMLLYIVSESS 715
           TG I    ++S SS
Sbjct: 179 TGYIGAFKLLSISS 192


>gi|85709956|ref|ZP_01041021.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85688666|gb|EAQ28670.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 671

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 36/201 (17%)

Query: 523 EAGGQLGDTGCAIGDGIRL---------QITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           EAG    D   AIG G+           ++ D+ +  EG               E++L+ 
Sbjct: 18  EAGSTPADVAAAIGPGLAKAALAARVDGEVRDLNRPFEG-------------DAELALIT 64

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDV---THSKPITS 629
           + D +   +L+  H   H+L  A+  +  G+ ++   +  T DG  +DV      +P + 
Sbjct: 65  SKDEEEALELA-RHDYAHVLAEAVQALYPGTQITFGPA--TDDGFYYDVMAPASREPFSM 121

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +L +IE+ + +II  + P+   + +R+  I    +   G  +         E E+  V+
Sbjct: 122 DDLPAIEEKMREIIKADKPLRREVWSRQQLIDKWESE--GESFKAEWAKELPENEELTVY 179

Query: 690 SSA-----LCGGTHVSSTGEI 705
            S      +C G H++STG++
Sbjct: 180 WSGDDWLDMCRGPHLASTGKL 200


>gi|330888315|gb|EGH20976.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 402

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|329733112|gb|EGG69449.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|300914721|ref|ZP_07132037.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
 gi|300889656|gb|EFK84802.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTDRPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDGG 687
            ++IE  +N II ++  +   ++ +++AI      G    +              Y+ G 
Sbjct: 116 FEAIEQEMNKIIKEDYKLERFVLPKDEAIKLMEEKGEPYKVELIEEIPEGEEISFYKQGE 175

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
              + LC G H+ STG +  + ++S
Sbjct: 176 F--TDLCAGPHLMSTGMVKTIKLLS 198


>gi|270157302|ref|ZP_06185959.1| putative alanyl tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164313|ref|YP_003454451.1| alanyl tRNA synthetase [Legionella longbeachae NSW150]
 gi|269989327|gb|EEZ95581.1| putative alanyl tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857486|emb|CBJ11318.1| putative alanyl tRNA synthetase [Legionella longbeachae NSW150]
          Length = 211

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 46/216 (21%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           Q +++ + VS  +  ++F++T  ++ +GGQ  D     G    L++T    + EG  +++
Sbjct: 11  QHQLMTKVVSVNESRLLFEETIGFSFSGGQESDRVTVNG----LEVT--HSELEGDLIYY 64

Query: 558 AIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS-TI----LGSHVSQNGSC 611
            +    GI + + ++++ ID+  R +L   H A  L+   +  TI    +G+H+++N + 
Sbjct: 65  TLPSGHGIAKGD-AVLMVIDFTRRYKLMRLHFAAELILELVQRTITARKIGAHIAENKA- 122

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI--MNREDAIASGAAALLG 669
                 R D ++   I SA  + I    N IIA +  ++T    +NR+            
Sbjct: 123 ------RIDFSYQHNI-SAIFEKILHEYNKIIATDKRIITGFSDINRQK----------- 164

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            +Y          +E  G  S  LCGGTHV ST E+
Sbjct: 165 -RY----------WEIDGF-SRVLCGGTHVKSTSEV 188


>gi|225025724|ref|ZP_03714916.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
 gi|224941505|gb|EEG22714.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++I 
Sbjct: 73  IRHSCAHLVGHAVKQLYPNAKMVIGPVIE-EGFYYDIATEKPFTPEDVAAIEARMKELIN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R + I        G +Y  R+     E E  G++       +C G HV 
Sbjct: 132 QDYDVVKIMTPRAETIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 189

Query: 701 ST 702
           +T
Sbjct: 190 NT 191


>gi|66047550|ref|YP_237391.1| synthetase, putative [Pseudomonas syringae pv. syringae B728a]
 gi|63258257|gb|AAY39353.1| synthetase, putative [Pseudomonas syringae pv. syringae B728a]
 gi|330969480|gb|EGH69546.1| synthetase, putative [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 263

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 43/165 (26%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ----KKAEGIFVH------------ 556
           +  D T  Y E GGQ  D G      I L I  V+    KK  G  +H            
Sbjct: 37  IELDCTVAYPEGGGQEADFGT-----IELPIGTVRFVWVKKLYGTPIHLEGFKGGKLGGV 91

Query: 557 --HAIVERGI-----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI--------L 601
             H I    +     +   M+ ++ ID   R +LS++HSA+H L+ A +++        +
Sbjct: 92  ILHMIHPEDLHLLDSISEGMAALIRIDILRRERLSLSHSASHFLYAAATSLSEELKQWTI 151

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           G H+ +N +       RFD    +  +S ++  IE   N++IA +
Sbjct: 152 GCHIKENSA-------RFDFLVEESFSSDDISEIERLANELIAHD 189


>gi|254511025|ref|ZP_05123092.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221534736|gb|EEE37724.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 31/181 (17%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 78  IRHDLAHIMARAVQEIWPDTKVTIGPVIE-NGWYYDFDRAEPFTPEDLGQIEKKMKEIIN 136

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           +  PV T + +R+ AI         T  N+  +V  ++          Y  G      LC
Sbjct: 137 KRDPVTTEVWDRQRAID------FYTANNEPYKVELIDAIPGDEPLRMYWHGDWQD--LC 188

Query: 695 GGTHVSSTGEI-----MLLYIVSE----SSIRAGIRRIE--AITG-QRARSHLMGQDEKL 742
            G H+  TG++      L+ I        S RA ++RI   A TG ++ ++HL   +E  
Sbjct: 189 RGPHLQHTGQVPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLHMLEEAA 248

Query: 743 K 743
           K
Sbjct: 249 K 249


>gi|167766936|ref|ZP_02438989.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
 gi|167710911|gb|EDS21490.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D    +  +  H+A+H+L  A+  +        G  I  +G  +D+    P T  +
Sbjct: 62  ILTFDSDEGKH-AFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYDMEKDTPFTQED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  I+ +NL + +    R++AIA         + N+  +V  +E         
Sbjct: 120 LEKIEKEMKKIVKENLEITSFTKPRDEAIA------FMKERNEPYKVELIEDLPEDSVIS 173

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G      LC G H+ +T  +    + S
Sbjct: 174 FYQQGEF--VDLCAGPHLMTTKPVKAFKLTS 202


>gi|282916943|ref|ZP_06324701.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770747|ref|ZP_06343639.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319430|gb|EFB49782.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460894|gb|EFC07984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|82751271|ref|YP_417012.1| threonyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123768508|sp|Q2YTA7|SYT_STAAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82656802|emb|CAI81231.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus RF122]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 15/194 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           + G    D   +I  G+R      +K   G F    +     L T+ S+ +         
Sbjct: 17  DKGTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPVSEEAL 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I
Sbjct: 71  EVLRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTH 698
           + +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G H
Sbjct: 130 VNENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTAKIKEFKLLS 199


>gi|317499591|ref|ZP_07957854.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893140|gb|EFV15359.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 641

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D    +  +  H+A+H+L  A+  +        G  I  +G  +D+    P T  +
Sbjct: 58  ILTFDSDEGKH-AFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYDMEKDTPFTQED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  I+ +NL + +    R++AIA         + N+  +V  +E         
Sbjct: 116 LEKIEKEMKKIVKENLEITSFTKPRDEAIA------FMKERNEPYKVELIEDLPEDSVIS 169

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G      LC G H+ +T  +    + S
Sbjct: 170 FYQQGEF--VDLCAGPHLMTTKPVKAFKLTS 198


>gi|283470950|emb|CAQ50161.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|259418221|ref|ZP_05742139.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345616|gb|EEW57460.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 648

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 37/184 (20%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDTKVTIGPVIE-NGWYYDFDRAEPFTPEDLGTIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------------YEDGGVHSS 691
           +  PV T + +R  A+           Y D      VE             Y  G     
Sbjct: 133 KREPVTTEVWDRAKAVQY---------YTDNNEPYKVELIDAIPGDEPLRMYWHGDWQD- 182

Query: 692 ALCGGTHVSSTGEI-----MLLYIVSE----SSIRAGIRRIE--AITG-QRARSHLMGQD 739
            LC G H+  TG++      L+ I        S RA ++RI   A TG ++ ++HL   +
Sbjct: 183 -LCRGPHLQHTGQVPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLTMLE 241

Query: 740 EKLK 743
           E  K
Sbjct: 242 EAAK 245


>gi|302346317|ref|YP_003814615.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302150675|gb|ADK96936.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 649

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  +  +G  +DV     + I+  +   IE+ + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAVE-NGFFYDVMPAEGQTISENDFPKIEEKMRELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTH 698
           +N  VV R +++ DA+    A   G +Y  +V  +  + EDG + + +      LC G H
Sbjct: 132 KNEQVVRRDVSKADAVKEFTAD--GQEY--KVEHIVEDLEDGTISTYSQGNFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LVSTGAIKAVKITS 201


>gi|218260223|ref|ZP_03475609.1| hypothetical protein PRABACTJOHN_01270 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224675|gb|EEC97325.1| hypothetical protein PRABACTJOHN_01270 [Parabacteroides johnsonii
           DSM 18315]
          Length = 154

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+ +    H+A H+L+  +  + G   S+N   I     + D    +  T
Sbjct: 1   MEQEIQLNEHNKAEYPPMHTAEHILNQTMVRMFGCPRSKNAH-IERKKSKCDYELPEEPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  VN++I ++LPV    + + +A      + L    ++ +R+V +     G 
Sbjct: 60  AEIMAEVERRVNEVIDRHLPVTIEFVPKAEAKEIVDLSKLPEDASNTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEI----MLLYIVSESSIRAGIRRIE 724
           +    C G HV++T EI    ML Y  ++  +R   +  E
Sbjct: 115 YDVCACIGAHVNNTSEIGHFKMLTYDYTDGRLRLRFKLTE 154


>gi|15924673|ref|NP_372207.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927261|ref|NP_374794.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|156980000|ref|YP_001442259.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006467|ref|ZP_05145068.2| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|54039693|sp|P67585|SYT_STAAN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042050|sp|P67584|SYT_STAAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225504|sp|A7X3A6|SYT_STAA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13701479|dbj|BAB42773.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247455|dbj|BAB57845.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722135|dbj|BAF78552.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|229086195|ref|ZP_04218404.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-44]
 gi|228697114|gb|EEL49890.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-44]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 19/213 (8%)

Query: 674 DRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           + +RVV +E Y+  G      CGGTH   TGE+  ++I+     + G+ R+  + G RA 
Sbjct: 19  EDIRVVFIENYDYNG------CGGTHPKYTGEVGPIHIIGWERNKGGV-RLTFVAGWRAL 71

Query: 733 SHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLS 787
             LMG  +  +K ++  L  S+  +  +V ++     E  ++LQ+++ K       E L 
Sbjct: 72  K-LMGHYQHIIKDVSKQLNSSENAIPNKVTQLLTSQKENEKELQIMNEKLLFVEANELLQ 130

Query: 788 CHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             K  D    +S + +    +E+ + + A+  +    +I    I  E K   ++   + +
Sbjct: 131 QSKQTDAGTLISKVFTNRSMQEI-AKLSAIITEQNENVITYFIIENEDKLQCILACGKTV 189

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               N +    L A     G GGG P  A+ GG
Sbjct: 190 QANMNTILKNALPAI---EGKGGGNPKSARGGG 219


>gi|282906079|ref|ZP_06313934.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282331371|gb|EFB60885.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++A           +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEA----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|156740370|ref|YP_001430499.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|156231698|gb|ABU56481.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 595

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  +        G  I  DG  +D    +P+T  +L+ IE  +  IIA
Sbjct: 13  LRHSAAHVMAQAVLELFPEGKIAIGPPIE-DGFYYDFDLPRPLTPDDLEEIEKRMRRIIA 71

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----------L 693
              P V R+++ ++A A         +  D +     EY + G  ++            L
Sbjct: 72  GKHPFVYRVVDPDEARALFRDQPYKLELIDGLLHGQDEYGEQGSTNTVISTYRHDTFEDL 131

Query: 694 CGGTHVSSTGEI 705
           C G H+  TG+I
Sbjct: 132 CRGPHLEHTGQI 143


>gi|326797103|ref|YP_004314923.1| Alanyl-tRNA synthetase, class IIc [Marinomonas mediterranea MMB-1]
 gi|326547867|gb|ADZ93087.1| Alanyl-tRNA synthetase, class IIc [Marinomonas mediterranea MMB-1]
          Length = 213

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 88/219 (40%), Gaps = 42/219 (19%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V   QT FYAE+GGQ  D G   G      I  V     G  + + +  +   +   ++
Sbjct: 26  DVELHQTIFYAESGGQESDKGTING------IPVVLATKHGKRIIYTLERQPDFKVGDTV 79

Query: 572 VLTIDYQNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           V  ID+Q R  L   H A  ++      H      +G+H+SQ+ S       R D    +
Sbjct: 80  VTQIDWQRRYALMKLHFAAEVVLETFYQHFTGMIKVGAHISQDKS-------RIDFEWPE 132

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            I    LK IE     I AQ L      ++ +  IAS  A     K   RV        D
Sbjct: 133 SIAPI-LKEIE-----IEAQAL------LDSDLIIASDFADEANEKRYWRV--------D 172

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           G   +   CGGTH+  T E+  L +    +I  G  R+E
Sbjct: 173 G--FAQVACGGTHLKRTSEVGCLQL-KRKNIGKGKERVE 208


>gi|291559712|emb|CBL38512.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SSC/2]
          Length = 641

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D    +  +  H+A+H+L  A+  +        G  I  +G  +D+    P T  +
Sbjct: 58  ILTFDSDEGKH-AFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYDMEKDTPFTQED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  I+ +NL + +    R++AIA         + N+  +V  +E         
Sbjct: 116 LEKIEKEMKKIVKENLEITSFTKPRDEAIA------FMKERNEPYKVELIEDLPEDSVIS 169

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G      LC G H+ +T  +    + S
Sbjct: 170 FYQQGEF--VDLCAGPHLMTTKPVKAFKLTS 198


>gi|78189671|ref|YP_380009.1| threonyl-tRNA synthetase, class IIA [Chlorobium chlorochromatii
           CaD3]
 gi|123729828|sp|Q3APV9|SYT_CHLCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78171870|gb|ABB28966.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           chlorochromatii CaD3]
          Length = 657

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 26/159 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+  A+  +        G  I   G  +DV+        +L++IE  + +I  ++
Sbjct: 82  HSSSHLMAQAIEELFAGSKFGAGPAIE-QGFYYDVSSEHRFREEDLRAIEARMLEISKRD 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRV-------VSVE----YEDGGVHSSALCG 695
             V  + M+RE+AI     A   +  ND  +V        +VE    Y  G    + LC 
Sbjct: 141 SSVQRQEMSREEAI-----AFFTSVRNDPYKVEILTETLKNVERVSLYHQGDF--TDLCT 193

Query: 696 GTHVSSTGEI--MLLYIVSES-----SIRAGIRRIEAIT 727
           G H+ STG+I  +LL  +S S     S R  ++RI  IT
Sbjct: 194 GPHLPSTGKIKAVLLTNISASYWRGDSNREQMQRIYGIT 232


>gi|229155963|ref|ZP_04284064.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228627570|gb|EEK84296.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 20/142 (14%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  I G+ V+     +  +G  +D+     +   +
Sbjct: 63  IVTIDSNEGVEIA-RHSAAHILAQAIKRIYGN-VNLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +  II +N+ +    ++RE+      AA L  + ND +++  +E         
Sbjct: 121 LREIEKEMKKIINENIKIERVEVSREE------AAKLFQEMNDHLKLELLEAIPSEESVT 174

Query: 683 -YEDGGVHSSALCGGTHVSSTG 703
            Y+ G      LC G H+ STG
Sbjct: 175 LYKQGEF--VDLCRGPHLPSTG 194


>gi|225568704|ref|ZP_03777729.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
 gi|225162203|gb|EEG74822.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
          Length = 583

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 7/128 (5%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ +H+L  A+  +        G  +  DG  +D   S P T+  L  +E  +  
Sbjct: 21  QEAFRHTTSHILAQAVKRLYPDTKLAIGPAVK-DGYYYDFEFSFPFTTEHLAEVEKEMRR 79

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGT 697
           I+ ++LP+   +++RE+A+        G  Y   +     + E+  ++        C G 
Sbjct: 80  IVKESLPLERSVVSREEALK--LMEERGESYKVEMIQALPKEEEISLYRQGEFVDFCAGP 137

Query: 698 HVSSTGEI 705
           HVS+T  I
Sbjct: 138 HVSNTSVI 145


>gi|194477315|ref|YP_002049494.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
 gi|171192322|gb|ACB43284.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
          Length = 599

 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I HS +H++  A+  +  +     G   T  G  +D  + +P T A+LKSI+  +  I
Sbjct: 25  LKIRHSMSHVMAMAVQKLFPNAQITIGPW-TESGFYYDFDNPEPFTEADLKSIKKGMIKI 83

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV-SVEYEDGGVHSSALCGGTHVSS 701
           I QNL      + R+D      A     K      ++  +     G     LC G HV++
Sbjct: 84  INQNLNFERVEVTRQDVACRIKAQNEPYKLEILAGLIEPITIYKLGEQWWDLCAGPHVNN 143

Query: 702 TGEI 705
           T E+
Sbjct: 144 TNEL 147


>gi|300087925|ref|YP_003758447.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527658|gb|ADJ26126.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 584

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 7/132 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I HSA H++  A+  I  S     G  I  +G  +D    +P+   +L  IE  +  I+
Sbjct: 12  AIRHSAAHIMAQAVLRIFPSARFGIGPAID-NGFYYDFELPRPLVPEDLAEIEAGMTAIV 70

Query: 644 AQNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +N P     + R+ A    AS    L   +       +++ Y +G      LC G HVS
Sbjct: 71  KENQPFSRETVTRQQAEELFASQPYKLELIRELPNDEEITI-YRNGDFFD--LCRGPHVS 127

Query: 701 STGEIMLLYIVS 712
            T  +    ++S
Sbjct: 128 HTARVKSFKLLS 139


>gi|254701818|ref|ZP_05163646.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|269792214|ref|YP_003317118.1| Threonyl/alanyl tRNA synthetase SAD [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099849|gb|ACZ18836.1| Threonyl/alanyl tRNA synthetase SAD [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 392

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 23/212 (10%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E + G +V++  D+ PF+   GGQ G  G  +  G+++++ D + + +G  V    +  G
Sbjct: 8   ERLKGDRVDLCLDENPFHLAGGGQPGGRGMLVSPGVQVEVQDCRVR-DGREVLTGRIIGG 66

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS------TILGSHVSQNGSCITPDGL 617
            +    ++   +D Q R  ++  HS  H L  AL        +   ++ +    IT D  
Sbjct: 67  DMALGETVEAQVDLQWRDWVARMHSGEHALSRALERNRPGLRVFKVNIGEREGLITLD-F 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYN 673
           + D+T         L   E+  N ++ ++LPV    +T     ED         L     
Sbjct: 126 QGDLTWDL------LWVAEEEANRVVGEDLPVTVEELTGYRAAEDPDLKANWERLQLDPP 179

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + +RVVS+     G +    C G HV  TG+I
Sbjct: 180 EIIRVVSL-----GGYDRVACCGVHVERTGQI 206


>gi|172036410|ref|YP_001802911.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171697864|gb|ACB50845.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 666

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 578 QNRRQL-SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           ++R+QL  I H+  H+L  A+ T+        G   T  G  +D     P T  ++K IE
Sbjct: 62  KDRQQLVKIRHTCAHVLGMAVQTLFPETKVTIGPW-TETGFYYDFDRLTPFTPEDMKKIE 120

Query: 637 DNVNDIIAQNLPVVTRIMNRED 658
             +  II  NLP++  +++R +
Sbjct: 121 GEMRRIIKANLPIIREVVDRAE 142


>gi|94499191|ref|ZP_01305729.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428823|gb|EAT13795.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV    PI   ELK +E  +N++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDADFPINEEELKQLEKRMNELAK 129

Query: 645 QNLPVVTRIMNREDA 659
            + PVV  +++ + A
Sbjct: 130 TSYPVVKEVVSWQTA 144


>gi|240850680|ref|YP_002972080.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267803|gb|ACS51391.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE  + +II 
Sbjct: 74  IRHDCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARQQPFTLDDLTIIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSA----L 693
           +N P    I +RE A           K++++     VE        +D  ++       L
Sbjct: 133 RNKPFRKEIWSREKA---------RKKFSEKKEFYKVELIDSIPEDQDLKIYYQGDWFDL 183

Query: 694 CGGTHVSSTGEI 705
           C G H+ STG+I
Sbjct: 184 CRGPHMQSTGQI 195


>gi|170290362|ref|YP_001737178.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174442|gb|ACB07495.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 234

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G K+    D+T F+  +GG   DTG       R  + DV ++ +   V H +  +  L
Sbjct: 22  VEGNKL--FLDRTAFHPTSGGVANDTGFIESSSGRWNVIDVIEEGD---VAHLLDSKPDL 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   ID+  R +L   H+A H+L   L    G+ V+  G  I P+  + D +  +
Sbjct: 77  SVGDIVRGHIDWDRRYRLMRLHTADHILTAILYKEKGALVT--GGHIDPEYAKSDFSLER 134

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVE 682
                  ++I+  VN+I +  + V    + RE+A+       L  K     +++R+V + 
Sbjct: 135 GEREVFEEAIK-KVNEIASSGIEVKIYFLPREEAMKIPGIVKLAAKMPPTLEKLRIVEIP 193

Query: 683 YEDGGVHSSALCGGTHVSST---GEIMLLYI 710
               G+   A  GG HV +T   GE+ LL +
Sbjct: 194 ----GIDIQA-DGGPHVRNTREIGEVKLLKV 219


>gi|229916382|ref|YP_002885028.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|259516484|sp|C4L461|SYT_EXISA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229467811|gb|ACQ69583.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 26/202 (12%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG    D   +I  G+R +    +   E I     I   G    ++ LV+  D ++   
Sbjct: 17  EAGVTAEDVAGSISPGLRKKAIAAKLDGELIDYRRPIEHDG----KIELVMP-DSEDGLD 71

Query: 583 LSINHSATHLLHHALSTILG--SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           L + HS+ HL+  A+  + G  +++         +G  +D+   + I   +L  IE  + 
Sbjct: 72  L-MRHSSAHLMAQAIKRLYGEDNNIYLGIGPTIENGFYYDIEMDRRINEEDLPEIEKMMK 130

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHS 690
            I+ +NL +   +++R++A+A      LG    D +++  +E          Y  G    
Sbjct: 131 RIVDENLEITREVVSRDEALARYKE--LG----DPLKIELIEDIPADQTLTIYHQGEFFD 184

Query: 691 SALCGGTHVSSTGEIMLLYIVS 712
             LC G HV ST ++ +  ++S
Sbjct: 185 --LCRGPHVPSTSKLKIFKLMS 204


>gi|325963430|ref|YP_004241336.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469517|gb|ADX73202.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 669

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 21/151 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  IT DG  FD   ++P T  +LK++E  +  I+ 
Sbjct: 70  LRHSTAHVMAQAVQQLRPDAKLGIGPYIT-DGFYFDFDVAEPFTPEDLKTLEKMMLKIVN 128

Query: 645 QNLPVVTRIMNREDAIAS--------------GAAALLGTKYN------DRVRVVSVEYE 684
           QN   V R+++ E+A  +                AA  G   N      D     +VE +
Sbjct: 129 QNQKFVRRVVSEEEAREAMKNEPYKLELLGKKNEAAEAGEGVNVEVGAGDITIYDNVERK 188

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +G      LC G H+ +T  I   + ++ SS
Sbjct: 189 EGTTVWCDLCRGPHLPNTKLISNAFALTRSS 219


>gi|282858709|ref|ZP_06267863.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588513|gb|EFB93664.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 649

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 16/157 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVND 641
           S  HS+ HLL  AL  +        G  I  +G  +DV  +   PI+  +   IE  + +
Sbjct: 70  SFWHSSAHLLAEALKELYPGIQFGFGPAIE-NGFFYDVQTADGTPISENDFPKIEAKMLE 128

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCG 695
           +  ++ P++ R + + +AI    A   G  Y  +V  +  + EDG + + +      LC 
Sbjct: 129 LAKKDSPIIRREVPKAEAIKEFTAD--GQTY--KVEHIDQDLEDGTISTYSQGNFTDLCR 184

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           G H+ STG   ++  V  +S+     R +A   Q  R
Sbjct: 185 GPHLVSTG---IIKAVKLTSVAGAFWRGDAKNDQLTR 218


>gi|326562407|gb|EGE12726.1| threonyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326569116|gb|EGE19178.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  +  +I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLGDMAKIEARMIQLIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|261752375|ref|ZP_05996084.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261742128|gb|EEY30054.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 76  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 134

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 135 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 191

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 192 ASTGQI 197


>gi|330951866|gb|EGH52126.1| threonyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 640

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++  IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAGIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|254564877|ref|XP_002489549.1| Putative protein of unknown function with strong similarity to
           alanyl-tRNA synthases from Eubacteria [Pichia pastoris
           GS115]
 gi|238029345|emb|CAY67268.1| Putative protein of unknown function with strong similarity to
           alanyl-tRNA synthases from Eubacteria [Pichia pastoris
           GS115]
 gi|328349971|emb|CCA36371.1| metal-dependent hydrolase [Pichia pastoris CBS 7435]
          Length = 411

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 173/430 (40%), Gaps = 61/430 (14%)

Query: 457 FIGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            IG    + + F+++ + +V+ Q P  D TN +    + ++  GE        Q   V  
Sbjct: 3   IIGRLACQNNSFLRDIETQVVSQTPCQDATNELPPDRRGLI--GE-------NQLYLVEL 53

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--SLVL 573
           + T  + E GGQ  DTG    +     +  V +   G+   H ++  G L  ++  ++V+
Sbjct: 54  EDTVLFPEGGGQPSDTGIVASEDHSFDVIYVGRN--GLNAVHYVIAPGDLPLKVGDNVVV 111

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSH--VSQNGSCI-TPDGLRFDVTHSKPITSA 630
           ++++++R     +H   H   H LS +L  H  V   G  + T D +   V   + +   
Sbjct: 112 SVNWESRW----DHMQQHTGQHLLSALLKIHFDVPTLGWGMGTGDTVLNYVEIPRKLEDF 167

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +   +   I QNLP+        D I     ++         R + + + D     
Sbjct: 168 EIEQLNLQIKATINQNLPISVV---EHDEIHEEKGSM---------RDIRIGHLDNNS-- 213

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL- 749
              C GTH+ S+ +I  +  +++ S +    R++ I G R    +      LK+L + L 
Sbjct: 214 ---CCGTHLQSSLQIKNVIALNQISGKKTNTRLQFIVGDRVNDFVSQSFSILKNLRNQLS 270

Query: 750 --------KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
                   KV+Q N   +     E+    +L  A+ K Q  V   S     D  F +   
Sbjct: 271 CPDELIPEKVAQLNSSIKASNTTEKKMLKEL--AEIKAQEIVASPSKIIFVDSEFSNDFT 328

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S +     K++ D         +I+L G    K    LIV  E++ D  + +  + L   
Sbjct: 329 SNIFKLSNKAIKDKT-------VILLSG----KNQGSLIVYGENVKDTTDGIS-SVLEKS 376

Query: 862 VLGGGGGGGR 871
           VL GGG   +
Sbjct: 377 VLKGGGSPSK 386


>gi|254481727|ref|ZP_05094970.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214037856|gb|EEB78520.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 640

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 19/131 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A   +        G  I  DG  +D       T  +L+ IE  + +I+ 
Sbjct: 71  IRHSTAHLLAQATQQLFPGIQVTIGPVIE-DGFFYDFATGHNFTPEDLEKIEQRMEEIVQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           Q+L V   + +RE A+       +     +R +V  +E          Y+ G      LC
Sbjct: 130 QDLTVERIVCSREKAVE------IFRNMGERYKVQIIEELPADEEISIYQQGAWMD--LC 181

Query: 695 GGTHVSSTGEI 705
            G HV STG++
Sbjct: 182 RGPHVPSTGKL 192


>gi|91224404|ref|ZP_01259666.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91190746|gb|EAS77013.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 213

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 44/225 (19%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KVE+  DQT F+AE+GGQ  D G    +GI + I     +  G+ + + +      
Sbjct: 22  VDGNKVEL--DQTIFFAESGGQESDKGTI--NGIPVLIA----QKLGVRLIYTLESSPNF 73

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALS------TILGSHVSQNGSCITPDGLRF 619
                +   ID++ R  L   H A  ++             +G+H+S+N S       R 
Sbjct: 74  TLGDIVTTNIDWKRRYALMKLHFAAEVVLEMFYQRREGIVKIGAHISENKS-------RI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK IE +V D+I  +  +++   ++E             +Y    RV 
Sbjct: 127 DFEWSESIGPL-LKEIETDVQDLINSDSVIISDFSDQESE----------RRY---WRV- 171

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                DG   +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 172 -----DG--FAQVPCGGTHLKRTSEVGQIQL-KRKNIGKGKERVE 208


>gi|306841798|ref|ZP_07474483.1| threonyl-tRNA synthetase [Brucella sp. BO2]
 gi|306288128|gb|EFM59518.1| threonyl-tRNA synthetase [Brucella sp. BO2]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 77  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPMIEKKMREIIQ 135

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 136 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 192

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 193 ASTGQI 198


>gi|195134891|ref|XP_002011870.1| GI14436 [Drosophila mojavensis]
 gi|193909124|gb|EDW07991.1| GI14436 [Drosophila mojavensis]
          Length = 431

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 35/231 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ + T  + E GGQ  D G   G  +R   + V+K +  +   H +           + 
Sbjct: 45  VICENTILFPEGGGQPCDYGTINGQPVR---SVVRKGSTAV---HFVESPTSFEEGAEVQ 98

Query: 573 LTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRFDVTH 623
             +D+  R      HS  HL+         +   S  LGS VS          ++    H
Sbjct: 99  QHLDWARRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVSH---------IQLSTPH 149

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVS 680
              I+   L  IE   ND+I +  PV   +++ E A     + A   L   +    RVV 
Sbjct: 150 L--ISRESLDLIERQANDLIREGRPVSVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVR 207

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           +E    G+ S+ +C GTHVS+  ++  + ++    ++  +  +  + G+RA
Sbjct: 208 IE----GIESN-MCCGTHVSNLSQLQCIKLLYAEKVKTNV-LVYFVVGERA 252


>gi|148273002|ref|YP_001222563.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830932|emb|CAN01876.1| thrS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 684

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 25/141 (17%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  I        G  +T DG  FD   ++P T  +LK+I  N+  I+ 
Sbjct: 76  LRHSAAHVMAQAVQQINPEAKLGIGPPVT-DGFYFDFDVAEPFTPEDLKAISKNMERIVR 134

Query: 645 QNLPVVTRIMNREDA---------------IASGAAALLGTKYNDRVRVVSVE---YED- 685
           Q      R++  E+A               +  G++  LG    + V V   E   YE+ 
Sbjct: 135 QGQRFTRRVVTEEEARELMADEPYKLELIGLKGGSSEELGED-GESVEVGGAELTVYENV 193

Query: 686 ----GGVHSSALCGGTHVSST 702
               G V    LC G H+ ST
Sbjct: 194 DGKTGEVFWRDLCRGPHLPST 214


>gi|23501949|ref|NP_698076.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161619021|ref|YP_001592908.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843337|ref|YP_001627741.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254704361|ref|ZP_05166189.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254710151|ref|ZP_05171962.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714150|ref|ZP_05175961.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716792|ref|ZP_05178603.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|256031646|ref|ZP_05445260.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256061156|ref|ZP_05451310.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256369496|ref|YP_003107004.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168776|ref|ZP_05755587.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260566393|ref|ZP_05836863.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261218590|ref|ZP_05932871.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261317705|ref|ZP_05956902.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261321913|ref|ZP_05961110.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261325162|ref|ZP_05964359.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261755033|ref|ZP_05998742.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758257|ref|ZP_06001966.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988738|ref|ZP_06101295.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|38258386|sp|Q8G0L8|SYT_BRUSU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083599|sp|A9M582|SYT_BRUC2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083600|sp|B0CGM0|SYT_BRUSI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23347895|gb|AAN29991.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161335832|gb|ABX62137.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674060|gb|ABY38171.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|255999656|gb|ACU48055.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260155911|gb|EEW90991.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260923679|gb|EEX90247.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294603|gb|EEX98099.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261296928|gb|EEY00425.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301142|gb|EEY04639.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261738241|gb|EEY26237.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261744786|gb|EEY32712.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|264660935|gb|EEZ31196.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|256159790|ref|ZP_05457533.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255048|ref|ZP_05460584.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261222239|ref|ZP_05936520.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|265998203|ref|ZP_06110760.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|260920823|gb|EEX87476.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|262552671|gb|EEZ08661.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|17987198|ref|NP_539832.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|256044731|ref|ZP_05447635.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564073|ref|ZP_05834559.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265991152|ref|ZP_06103709.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|22654120|sp|Q8YH89|SYT_BRUME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17982868|gb|AAL52096.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260154089|gb|EEW89181.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|263001936|gb|EEZ14511.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|220961892|gb|ACL93383.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
          Length = 165

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D    +  I++ +L  IE+ +  I+
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHFGVGPAIE-DGFYYDTDNQAGQISNEDLPRIEEEMKKIV 62

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    +DGG+          LC
Sbjct: 63  KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDDGGLTIYRQGEYVDLC 114

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 115 RGPHVPSTGRIQIFHLLN 132


>gi|321313312|ref|YP_004205599.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320019586|gb|ADV94572.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 544 TDVQKKAEGIFVHHAIVERGI-LRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           + +QKKA    V+  +V+    L  +  L ++T+D Q   Q+ + H+  H+L  A+  + 
Sbjct: 32  SSLQKKAAAGQVNGKLVDLSFKLEEDAKLSIVTLDSQEGLQV-LRHTTVHVLVQAVKRLY 90

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-- 659
           G  VS     +  DG  +D+   K + S +L++IE  +  II +NL +    ++ E+A  
Sbjct: 91  GE-VSLGVGPVIEDGFYYDMKLGKSLASGDLEAIEKEMEHIINENLEIKRMEVSYEEAEE 149

Query: 660 -IASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEI 705
             A     L      D  R   +  Y+ G      LC G H+ STG I
Sbjct: 150 LFAQKGERLKLEILKDIPRGEDITLYQQGEF--VDLCRGPHLPSTGMI 195


>gi|294789007|ref|ZP_06754247.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483109|gb|EFG30796.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE+ +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPNAKMVIGPVID-EGFYYDIATEKPFTPEDMAAIEERMKQLIN 129

Query: 645 QNLPVVTRIMNREDAI 660
           Q+  V+ ++  R + I
Sbjct: 130 QDYDVIKKMTPRAEVI 145


>gi|49474171|ref|YP_032213.1| threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|73919771|sp|Q6FZZ7|SYT_BARQU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49239675|emb|CAF26046.1| Threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE  +++II 
Sbjct: 74  IRHDCAHVLAEAVQELFPETQVTIGPVIE-NGFYYDFARQQPFTLNDLTIIEKKMHEIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +N P    I +R+ A  I S    L   +  D +   + + + Y+        LC G H+
Sbjct: 133 RNKPFRKEIWSRKKAREIFSEKNELYKVELIDSIPDNQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
            STG+I
Sbjct: 190 QSTGQI 195


>gi|294852343|ref|ZP_06793016.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820932|gb|EFG37931.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 683

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 99  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 157

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 158 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 214

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 215 ASTGQI 220


>gi|254706742|ref|ZP_05168570.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261314206|ref|ZP_05953403.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261303232|gb|EEY06729.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|225627544|ref|ZP_03785581.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617549|gb|EEH14594.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 693

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 109 IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 167

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 168 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 224

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 225 ASTGQI 230


>gi|306843943|ref|ZP_07476538.1| threonyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275698|gb|EFM57422.1| threonyl-tRNA synthetase [Brucella sp. BO1]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|256113621|ref|ZP_05454441.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265994988|ref|ZP_06107545.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766101|gb|EEZ11890.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|254719143|ref|ZP_05180954.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984137|ref|ZP_06096872.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838428|ref|ZP_07471273.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662729|gb|EEZ32990.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406568|gb|EFM62802.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|170781142|ref|YP_001709474.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155710|emb|CAQ00831.1| threonine-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 684

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 25/141 (17%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  I        G  +T DG  FD   ++P T  +LK+I  N+  I+ 
Sbjct: 76  LRHSAAHVMAQAVQQINPEAKLGIGPPVT-DGFYFDFDVAEPFTPEDLKAISKNMERIVR 134

Query: 645 QNLPVVTRIMNREDA---------------IASGAAALLGTKYNDRVRVVSVE---YED- 685
           Q      R+++ E+A               +  G++  LG    + V V   E   YE+ 
Sbjct: 135 QGQRFTRRVVSEEEARELMAAEPYKLELIGLKGGSSDELGED-GESVEVGGAELTVYENV 193

Query: 686 ----GGVHSSALCGGTHVSST 702
               G V    LC G H+ ST
Sbjct: 194 DGKTGEVFWRDLCRGPHLPST 214


>gi|326538797|gb|ADZ87012.1| threonyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 77  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 135

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 136 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 192

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 193 ASTGQI 198


>gi|319651798|ref|ZP_08005923.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396450|gb|EFV77163.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 643

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 7/132 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+   L  +V      +   G  +D+   + ++  +L  IE  +  II 
Sbjct: 74  LRHSTAHLMAQAIKR-LYKNVKLGVGPVIEGGFYYDIDLEESLSPEDLPVIEKEMKKIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +NL VV + ++R +A+       +G +Y   +     E E   ++       LC G HV 
Sbjct: 133 ENLDVVRKEVSRNEAVQMYKE--IGDEYKLELIEAIPEDETVTIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVS 712
           STG++    ++S
Sbjct: 191 STGKLKEFKLLS 202


>gi|167758905|ref|ZP_02431032.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
 gi|167663312|gb|EDS07442.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
          Length = 641

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 23/162 (14%)

Query: 565 LRTEMSL-----VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           LRT++S      +LT D ++ R  +  H+ +H++  A+  +        G  I  +G  +
Sbjct: 46  LRTDVSKDCELELLTFDSEDGRG-AFWHTTSHIMAQAIKRLYPETKLAIGPSID-NGFYY 103

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+    P  + +L+ IE  +  I+ + LP+      RE+AIA         K ND    V
Sbjct: 104 DLDRETPFVAEDLEKIEAEMKKIVKEALPIERFTKTREEAIAY-------FKENDEPYKV 156

Query: 680 SV-----EYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVS 712
            +     E E+   +       LC G H+ ST  +    + S
Sbjct: 157 ELVEDLPEGEEISFYKQGEFVDLCAGPHLMSTKAVKAFKLTS 198


>gi|330977708|gb|EGH77611.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 477

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ +  P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYEPPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
           ++  V+ ++  R + I
Sbjct: 130 KDYDVIKKVTPRAEVI 145


>gi|326409092|gb|ADZ66157.1| threonyl-tRNA synthetase [Brucella melitensis M28]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 76  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 134

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 135 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 191

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 192 ASTGQI 197


>gi|254693779|ref|ZP_05155607.1| threonyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261214058|ref|ZP_05928339.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260915665|gb|EEX82526.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|237815491|ref|ZP_04594489.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790328|gb|EEP64538.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 693

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 109 IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 167

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 168 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 224

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 225 ASTGQI 230


>gi|23099609|ref|NP_693075.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
 gi|73919811|sp|Q8EPF3|SYT_OCEIH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22777839|dbj|BAC14110.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
          Length = 646

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 23/205 (11%)

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL---VLTI 575
           P  +E    +G TG  I   I      ++K+A  I +   +V+   LR E+S    +  I
Sbjct: 9   PDGSEKQFPVGTTGEEIAASIS---PGLKKQALAIKLDGELVD---LRRELSSGGSIEII 62

Query: 576 DYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            Y+N   L +  HS+ HLL  A+  +    V      +  +G  +D+     +T  +L  
Sbjct: 63  TYKNNEGLEVLRHSSAHLLAQAIKRLFND-VKLGVGPVIEEGFYYDIDMEHKLTPEDLPK 121

Query: 635 IEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGG 687
           IE  +  II +NL +    V+R  N+   + S     L  +  D +     V++ YE G 
Sbjct: 122 IEKEMKRIIDENLEIKRVEVSR--NKAQEMFSDIGDDLKLELIDAIPENEQVTI-YEQGE 178

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVS 712
                LC G HV ST +I    ++S
Sbjct: 179 FFD--LCRGIHVPSTSKIKAFKLLS 201


>gi|62289987|ref|YP_221780.1| threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699915|ref|YP_414489.1| threonyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024229|ref|YP_001934997.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|254689295|ref|ZP_05152549.1| threonyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254697431|ref|ZP_05159259.1| threonyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730329|ref|ZP_05188907.1| threonyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256257545|ref|ZP_05463081.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260545263|ref|ZP_05821004.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260883825|ref|ZP_05895439.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|73919775|sp|Q57D65|SYT_BRUAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123740930|sp|Q2YQ07|SYT_BRUA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689368|sp|B2S5S6|SYT_BRUA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62196119|gb|AAX74419.1| ThrS, threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616016|emb|CAJ11049.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Threonyl-tRNA synthetase, class IIa:TGS
           domain:A [Brucella melitensis biovar Abortus 2308]
 gi|189019801|gb|ACD72523.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|260096670|gb|EEW80545.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260873353|gb|EEX80422.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|260754807|ref|ZP_05867155.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758029|ref|ZP_05870377.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761852|ref|ZP_05874195.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|297248387|ref|ZP_06932105.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260668347|gb|EEX55287.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672284|gb|EEX59105.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674915|gb|EEX61736.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|297175556|gb|EFH34903.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 76  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 134

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 135 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 191

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 192 ASTGQI 197


>gi|225852573|ref|YP_002732806.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263936|ref|ZP_05466468.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|254783511|sp|C0RJ44|SYT_BRUMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225640938|gb|ACO00852.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263094080|gb|EEZ18002.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 133 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 190 ASTGQI 195


>gi|149926877|ref|ZP_01915136.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824429|gb|EDM83647.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +  +     G  I  DG  +D ++ +P T  +L++IE  + +   
Sbjct: 71  IRHSTAHLLAYAVKELFPTAQVTIGPVIE-DGFYYDFSYERPFTPEDLEAIEKKMAE--- 126

Query: 645 QNLPVVTRIMNREDAIASGAAALL---GTKYNDRVRVVSVEYEDGGVHSSA----LCGGT 697
             L  +  ++ RE+ +   A       G  Y   +       E+  ++       LC G 
Sbjct: 127 --LAKLDEVVTREEWVRDDAVQFFKDQGEHYKAEIIASIPSNENISLYREGKFIDLCRGP 184

Query: 698 HVSSTGEI 705
           HV +TG++
Sbjct: 185 HVPNTGKL 192


>gi|146339967|ref|YP_001205015.1| threonyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|146192773|emb|CAL76778.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Bradyrhizobium sp. ORS278]
          Length = 688

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 25/189 (13%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS-INH 587
           G TG  I  GI   +    K+   + ++  + +      E + +  +D  + R L  I H
Sbjct: 49  GTTGLDIAKGISPSLA---KRTVAMALNGDVADLNDPINEDARLELVDRDDPRALELIRH 105

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
              H+L  A+  +        G  I  +G  +D   ++P T  +  +IE  + +II ++ 
Sbjct: 106 DCAHVLAEAVQALWPGTQVTIGPVIE-NGFYYDFFRNEPFTPEDFAAIEKKMREIIGRDK 164

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----------LCGG 696
           P    + +RE              + D+     VE  D    +             LC G
Sbjct: 165 PFTKEVWDREKT---------KQVFRDKGEAFKVELVDAIPGNEPIKIYYQGDWFDLCRG 215

Query: 697 THVSSTGEI 705
            H++STG+I
Sbjct: 216 PHMTSTGKI 224


>gi|319892730|ref|YP_004149605.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162426|gb|ADV05969.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464237|gb|ADX76390.1| threonyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 645

 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 21/138 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D    + ++S + + IE  +  II 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVHFGVGPVID-GGFYYDFDMEEKVSSDDFEKIEKTMKQIIE 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           +N  V  ++++R++A A  A        ND  ++  +E          Y  G    + LC
Sbjct: 132 ENHKVERQVVSRDEAKAFFA--------NDPYKLELIEAIPQDEQVTLYSQGEF--TDLC 181

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV ST +I    ++S
Sbjct: 182 RGVHVPSTSKIKAFKLLS 199


>gi|207341652|gb|EDZ69645.1| YNL040Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 456

 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 124/290 (42%), Gaps = 36/290 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           E+    T  + E GGQ  D+G   I +G R        K E I V H  V R  L  +  
Sbjct: 46  EIELQDTILFPEGGGQPSDSGFLKIVEGNR-----NSSKIEKILVSH--VSRFGLHAKHH 98

Query: 569 --------MSLVLTIDYQNRRQLSINHSATHLL------HHALSTI---LGSHVSQNGSC 611
                    ++ + +D Q R      H+  HLL      ++ + T+   +G  +++    
Sbjct: 99  LNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPV 158

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLG 669
           + P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + + 
Sbjct: 159 LEPSDYFNYIELNRKLTLDEITNVSDEINQLII-NFPQEIIVEERIGEETVDEVSTSKIP 217

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRAGIRRIEAITG 728
             Y D  + V      G + S+  CG TH+  T +I  + I+S +S++R    R+  + G
Sbjct: 218 DDY-DLSKGVLRTIHIGDIDSNPCCG-THLKCTSQIGSILILSNQSAVRGSNSRLYFMCG 275

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +R   +    ++ L    + L  S+  +    E+I  + +++Q ++ + +
Sbjct: 276 KRVSLYAKSVNKILLDSKNLLSCSETQI---SEKITRQTKQIQQLNKREQ 322


>gi|225181661|ref|ZP_03735101.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167642|gb|EEG76453.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 636

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 11/125 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++H+L  A+  +        G  I  DG  +D  +S+    A+L+ IE  +  II ++
Sbjct: 74  HTSSHILALAVKRLFKGVKLGIGPAIK-DGFYYDFDYSESFVPADLEKIEKEMEKIIKES 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTHVS 700
           LP+    + R++A+       LG  Y  +V ++    ED  +          LC G H+ 
Sbjct: 133 LPLERFELERQEAVEYFNK--LGEDY--KVELIQDLPEDAVISCYRCGEFVDLCAGPHLP 188

Query: 701 STGEI 705
           +TG +
Sbjct: 189 TTGRV 193


>gi|6324288|ref|NP_014358.1| hypothetical protein YNL040W [Saccharomyces cerevisiae S288c]
 gi|1730724|sp|P53960|YNE0_YEAST RecName: Full=Putative alanyl-tRNA editing protein alaX;
           Short=AlaX; Short=AlaXp; Short=AlaXp-II; AltName:
           Full=Alanyl-tRNA deacylase alaX
 gi|1301892|emb|CAA95907.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814611|tpg|DAA10505.1| TPA: hypothetical protein YNL040W [Saccharomyces cerevisiae S288c]
          Length = 456

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 124/290 (42%), Gaps = 36/290 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           E+    T  + E GGQ  D+G   I +G R        K E I V H  V R  L  +  
Sbjct: 46  EIELQDTILFPEGGGQPSDSGFLKIVEGNR-----NSSKIEKILVSH--VSRFGLHAKHH 98

Query: 569 --------MSLVLTIDYQNRRQLSINHSATHLL------HHALSTI---LGSHVSQNGSC 611
                    ++ + +D Q R      H+  HLL      ++ + T+   +G  +++    
Sbjct: 99  VNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPV 158

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLG 669
           + P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + + 
Sbjct: 159 LEPSDYFNYIELNRKLTLDEITNVSDEINQLII-NFPQEIIVEERIGEETVDEVSTSKIP 217

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRAGIRRIEAITG 728
             Y D  + V      G + S+  CG TH+  T +I  + I+S +S++R    R+  + G
Sbjct: 218 DDY-DLSKGVLRTIHIGDIDSNPCCG-THLKCTSQIGSILILSNQSAVRGSNSRLYFMCG 275

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +R   +    ++ L    + L  S+  +    E+I  + +++Q ++ + +
Sbjct: 276 KRVSLYAKSVNKILLDSKNLLSCSETQI---SEKITRQTKQIQQLNKREQ 322


>gi|242012761|ref|XP_002427096.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212511354|gb|EEB14358.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 361

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 114/261 (43%), Gaps = 32/261 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG--IFVHHAIVERGILRTEM 569
           EV+ + +  + E GGQ  DTG  + D   + ++ V +K +   I++   +   G ++   
Sbjct: 33  EVICEDSILFPEGGGQPWDTG-FVND---IPVSQVLRKGDSAVIYLPKPVTVGGEVKQ-- 86

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH----SK 625
                I+++ R     +H   H   H ++ I+      +    T   L  +++H    +K
Sbjct: 87  ----VINWERR----FDHMQQHSGQHLITAIINEEYKID---TTSWWLGEELSHIELDTK 135

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYE 684
            +T+ ++ +IE+  N  I + +PV  ++  +       A    L       +R+V +   
Sbjct: 136 QLTNEQITNIENLANQKIIEQIPVTVKLYEKNSKEVENARTRGLPDDVTGPIRIVEI--- 192

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G+ S  LC GTHV++ G++  + ++     +     +  ++G R   +L    E  + 
Sbjct: 193 -VGLESD-LCCGTHVNNLGQLQSIKLLYAEKGKKNKTNLFFLSGTRVLKYLSKCLETEQK 250

Query: 745 LASFLKV---SQGNVVGRVEE 762
           L   LK    S  +++ ++++
Sbjct: 251 LTKLLKCDPSSYADIISKLQQ 271


>gi|302506078|ref|XP_003014996.1| hypothetical protein ARB_06756 [Arthroderma benhamiae CBS 112371]
 gi|291178567|gb|EFE34356.1| hypothetical protein ARB_06756 [Arthroderma benhamiae CBS 112371]
          Length = 265

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 38/228 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA--EGIFVHHAIVERGILRTEM 569
           VV ++T F+ + GGQ  D G      G    +T V+  A  +G  +H             
Sbjct: 48  VVTEKTIFHPQGGGQPSDIGMITSPSGASFTVTSVRMDALQDGQVLHFGRFGPSTFAPGE 107

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----------GSHVSQNGSCITPDGLR 618
           ++   ID + R   S  H+A H+L  A+  ++            SH   + +C    GL 
Sbjct: 108 TVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFEELKASHFPDSAACEF-RGL- 165

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYND 674
                   I      +I+D VN+ IA  +PV     + +D  + G   L+         +
Sbjct: 166 --------IEGKWKPNIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLIPDPTLVPPGE 217

Query: 675 RVRVVSV----EYEDGGVH--SSALCGGTHVS----STGEIMLLYIVS 712
           + RVV++     Y  GG H  S+ LCG T V     S G   + Y V+
Sbjct: 218 KSRVVNIVGAEVYPCGGTHVDSTDLCGQTTVKKISRSKGTSRVSYTVA 265


>gi|261328034|emb|CBH11011.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L +AL  +  + +S  G  +   G  ++   ++P+T A+  +IE  + +++   
Sbjct: 123 HSSSHVLGYALERVFQTRLSV-GPALEEGGFFYEGETNRPVTEADYTTIETAMQELVKMK 181

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-------GTHV 699
           +P     + +EDA+       L      + ++++ +  + G  +   CG       G H+
Sbjct: 182 VPFQRLTVKKEDALR------LFQYTEFKSKILASKVPENGTCTVYRCGNLIDPCRGPHL 235

Query: 700 SSTGEIMLLYIVSESS 715
             TG +    +   SS
Sbjct: 236 PDTGRVKSFSLTKNSS 251


>gi|257124962|ref|YP_003163076.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257048901|gb|ACV38085.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 636

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  +     G  I  +G  +D    KP T  +L  IE  +  I+ 
Sbjct: 71  IRHSAAHIMAQAVQRLFPNTKVTIGPVIE-NGFFYDFDPEKPFTEEDLAKIEGEMAKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---------LCG 695
           +N       M  E+A    A    G  Y  +V ++    ED G    +         LC 
Sbjct: 130 ENYEFKRSEMTAEEAKKFFAEK--GETY--KVEII----EDLGADKVSIYQQGEFIDLCR 181

Query: 696 GTHVSSTGEIMLLYIVS 712
           GTH+ STG +    ++S
Sbjct: 182 GTHIPSTGYLKAFKLMS 198


>gi|328907347|gb|EGG27113.1| threonine--tRNA ligase [Propionibacterium sp. P08]
          Length = 684

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 19/135 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 70  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 128

Query: 645 QNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVE------------YEDGG 687
           +N   V R+   E A    A       L+GTK        SVE            + +G 
Sbjct: 129 ENQRFVRRVTTEESAREELADQPYKLELIGTK-GKGAEGASVEVGGGELTIYDNVHRNGE 187

Query: 688 VHSSALCGGTHVSST 702
           V    LC G HV ST
Sbjct: 188 VAWKDLCRGPHVPST 202


>gi|72388976|ref|XP_844783.1| threonyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62176044|gb|AAX70165.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801317|gb|AAZ11224.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L +AL  +  + +S  G  +   G  ++   ++P+T A+  +IE  + +++   
Sbjct: 123 HSSSHVLGYALERVFQTRLSV-GPALEEGGFFYEGETNRPVTEADYTTIETAMQELVKMK 181

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-------GTHV 699
           +P     + +EDA+       L      + ++++ +  + G  +   CG       G H+
Sbjct: 182 VPFQRLTVKKEDALR------LFQYTEFKSKILASKVPENGTCTVYRCGNLIDPCRGPHL 235

Query: 700 SSTGEIMLLYIVSESS 715
             TG +    +   SS
Sbjct: 236 PDTGRVKSFSLTKNSS 251


>gi|261331286|emb|CBH14276.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 27/241 (11%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILR 566
           Q  +V+   +  + + GGQ  D G  I       L +  VQ++ +   ++       +L+
Sbjct: 61  QSYDVILTDSVLFPDGGGQPCDHGVLIRRETNEELPVRVVQRRGDLCVMNLPC----MLK 116

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D+  R     +HSA HLL   +       +      +T       +   K 
Sbjct: 117 VGEDVQLRVDWDRRLDHMQHHSAQHLLTAVVEDPGFCGLPTVSWALTQPYCHIVLPTGKR 176

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRI----------MNREDAIASGAAALLGTK----- 671
           I    ++ IE++ N +IA+ +PV  R+          + RE         L G++     
Sbjct: 177 IEPEMVQRIEEHCNRVIARAVPVRCRVYSSKEEYENDLQREPEKNDDGGRLRGSRPIPPD 236

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +R++ +E  D        C GTHV++  ++ +L ++ + + +    ++  I G+R 
Sbjct: 237 VAGPIRIIDMEGID-----CCTCCGTHVTNLAQLQVLKLLHQET-KGDTLKLFFIAGERV 290

Query: 732 R 732
           R
Sbjct: 291 R 291


>gi|34495790|ref|NP_900005.1| alanyl-tRNA synthetase-like protein [Chromobacterium violaceum ATCC
           12472]
 gi|34101646|gb|AAQ58014.1| probable alanyl-tRNA synthetase related protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 214

 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 30/208 (14%)

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +T FYA +GGQ  D+G   G  +RL       + +G  + + +     L+   + ++ ID
Sbjct: 31  ETIFYAFSGGQESDSGRIAGHPVRL------AERQGADIAYTLDAGHGLQAGDAAMVEID 84

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           +  R +L   H A  L+   +   +   V + G+ I  D  R D     PIT   L  I 
Sbjct: 85  WPRRYRLMRLHFAAELVLEVICRQVDG-VEKIGAHIAEDKARIDFALDLPITPL-LADIA 142

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
                +I  +LP+V+       A +  AA   G +Y          +E  G  +   CGG
Sbjct: 143 AAAQRLINDDLPIVS-------AFSDEAA---GRRY----------WELPGF-ARVPCGG 181

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIE 724
           TH+  +GE+  + +    +I  G  R+E
Sbjct: 182 THLKRSGEVGRIAL-KRRNIGKGKERVE 208


>gi|49475537|ref|YP_033578.1| threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|73919770|sp|Q6G3K1|SYT_BARHE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49238343|emb|CAF27567.1| Threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 658

 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE  + +II 
Sbjct: 74  IRHDCAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARQQPFTLDDLTIIEKKMREIIQ 132

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           +N P    + +R+ A  I S    L   +  D +   + + V Y+        LC G H+
Sbjct: 133 RNKPFRKEVWSRKKAREIFSEKGELYKVELIDSIPDNQDLKVYYQGDWFD---LCRGPHM 189

Query: 700 SSTGEI 705
            STG+I
Sbjct: 190 QSTGQI 195


>gi|269968488|ref|ZP_06182498.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269826904|gb|EEZ81228.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 96/225 (42%), Gaps = 44/225 (19%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V G KVE+  DQT F+AE+GGQ  D G    +GI + I     +  G+ + + +      
Sbjct: 39  VDGNKVEL--DQTIFFAESGGQESDKGTI--NGIPVLIA----QKLGVRLIYTLESSPNF 90

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALS------TILGSHVSQNGSCITPDGLRF 619
                +  +ID++ R  L   H A  ++             +G+H+S+N S       R 
Sbjct: 91  TLGDIVTTSIDWKRRYALMKLHFAAEVVLEMFYQRREGIVKIGAHISENKS-------RI 143

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK IE +V D+I  +  +++   ++E             +Y    RV 
Sbjct: 144 DFEWSENIGPL-LKEIETDVQDLINSDSVIISDFSDQESE----------RRY---WRV- 188

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                DG   +   CGGTH+  T E+  + +    +I  G  R+E
Sbjct: 189 -----DG--FAQVPCGGTHLKRTSEVGQIQL-KRKNIGKGKERVE 225


>gi|237798458|ref|ZP_04586919.1| synthetase, putative [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021309|gb|EGI01366.1| synthetase, putative [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 264

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 25/153 (16%)

Query: 516 DQTPFYAEAGGQLGDTGCA---------------IGDGIRLQITDVQKKAEGIFVHHA-- 558
           D+T  Y E GGQ  D G                  G  IRL+      K  GI +H    
Sbjct: 42  DRTVAYPEGGGQEADFGTIELRSGLVRFIGAKKLYGTPIRLEGFK-GGKLGGIILHMVHP 100

Query: 559 ----IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC-IT 613
               ++++  +   M+  + ID   R +L+++H+A+H L+ A  ++          C I 
Sbjct: 101 DDLHLLDK--INEGMTAHVKIDILRRARLTLSHTASHFLYAAAVSLRKELKQWTLGCHIK 158

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
            D  RFD    KP +  E+  IE   N++I +N
Sbjct: 159 EDSARFDFLVEKPFSIEEVSEIERRANELIVRN 191


>gi|218961058|ref|YP_001740833.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167729715|emb|CAO80627.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 633

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HL+  A+  +        G  I   G  +D    +P T  +L+ IE  + ++  Q 
Sbjct: 73  HSTAHLMAQAVKQLFPEVKIAIGPAIE-QGFYYDFDRDEPFTEEDLQKIEAKMQELSTQA 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSA-------LCGGTH 698
           LP     +++E+AI       L ++ N+  ++  +E   +G + SS        LC G H
Sbjct: 132 LPYYRTELSKEEAIK------LFSEMNETYKLELLEDIPEGEIISSYRQGDFIDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSES 714
           +  TG+I  + ++  S
Sbjct: 186 LPDTGKIKAIKLLRTS 201


>gi|313837083|gb|EFS74797.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927888|gb|EFS91719.1| threonyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314971856|gb|EFT15954.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 689

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 19/135 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRVVSVE------------YEDGG 687
           +N   V R+   E A    A       L+GTK        SVE            + +G 
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTK-GKGAEGASVEVGGGELTIYDNVHRNGE 192

Query: 688 VHSSALCGGTHVSST 702
           V    LC G HV ST
Sbjct: 193 VAWKDLCRGPHVPST 207


>gi|260893515|ref|YP_003239612.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865656|gb|ACX52762.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G  + D + L   + QK+     V+  +V+    L +E  +       +  +    HS  
Sbjct: 17  GATVKDVLALMPPEYQKRVLAAKVNGVLVDLSAPLPSEAKVEFLTFADSEGKEVYWHSTA 76

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+L  A+  +        G   T +G  +D     P +  +L+ IE  +  II  NLP+V
Sbjct: 77  HILAQAVKRLYPEAKLAIGPP-TANGFYYDFDVPTPFSPEDLERIEAEMKRIIEANLPIV 135

Query: 651 TRIMNREDA---IASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEI 705
              + RE+A    AS   A      ++    V +  Y  G      LC G H+ STG +
Sbjct: 136 REEIAREEARRFFASRGEAYKVELIDELPPEVPITLYRQGEF--VDLCRGPHLPSTGYV 192


>gi|116075451|ref|ZP_01472711.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067648|gb|EAU73402.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 609

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++VL    ++   L I HS +H++  A+  +        G   T  G  +D     P T 
Sbjct: 22  TVVLPKTSESDTLLRIRHSMSHVMAMAVQKLFPKAQVTIGPW-TESGFYYDFDSPDPFTE 80

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVSV 681
           A+LK+I   +  II + LP+    ++R +A A   A         L G +    +  +  
Sbjct: 81  ADLKAIRKEMIKIINRKLPLERVEVSRAEAEAKIKAQNEPYKLEILSGIQEPITLYTLGE 140

Query: 682 EYEDGGVHSSALCGGTHVSSTGEI 705
           E+ D       LC G HV++T E+
Sbjct: 141 EWWD-------LCAGPHVANTSEL 157


>gi|289167501|ref|YP_003445770.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
 gi|288907068|emb|CBJ21902.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
          Length = 647

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  +S   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNSAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|220961890|gb|ACL93382.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
 gi|220961894|gb|ACL93384.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
 gi|220961896|gb|ACL93385.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
          Length = 165

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D    +  I++ +L  IE+ +  I+
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNQAGQISNEDLPRIEEEMKKIV 62

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    +DGG+          LC
Sbjct: 63  KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDDGGLTIYRQGEYVDLC 114

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 115 RGPHVPSTGRIQIFHLLN 132


>gi|33862697|ref|NP_894257.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|73919817|sp|Q7V8D2|SYT_PROMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33634613|emb|CAE20599.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9313]
          Length = 640

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I HS  HL+ HA+  +        G  I  DG  +D+ +  P T  +L++IE  + +++
Sbjct: 70  TIRHSFAHLIGHAVKQLYPEAKMAIGPVIE-DGFYYDIAYDHPFTPKDLEAIEARMKELV 128

Query: 644 AQNLPVVTRIMNREDA 659
             +  V   I+++E+A
Sbjct: 129 KLDYDVNVEIVSKEEA 144


>gi|219666254|ref|YP_002456689.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536514|gb|ACL18253.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +    +   G  I  +G  +D       T  +L+ IE  +  ++ 
Sbjct: 72  LRHSTSHLMAEAVRNLFPGTILGIGPAID-NGFYYDFDSEHVFTPEDLEKIEAEMRRLVK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +N     + ++R DA+   +A   G KY   +        V+S+ Y  GG   + LC G 
Sbjct: 131 ENKRYERKEISRSDALQYFSAE--GEKYKVELIEDLPEDEVISM-YTQGGF--TDLCAGP 185

Query: 698 HVSSTG 703
           H+ STG
Sbjct: 186 HIPSTG 191


>gi|283768510|ref|ZP_06341422.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bulleidia extructa W1219]
 gi|283104902|gb|EFC06274.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bulleidia extructa W1219]
          Length = 369

 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 34/196 (17%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           F++T FY + GG L D G   G    +++TD++     +  H      GIL   + + + 
Sbjct: 25  FEETIFYGDKGGMLADVGTING----MKVTDLKYDENEVLWHKV---DGILTDPIEMKV- 76

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR-----FDVTHSKPITS 629
               +R    +N S   L H     + G +  +    I   G++     ++V  +  +  
Sbjct: 77  ----DRETRYLNTSVQTLFH----AMDGYYRRKKDKYIIAIGVQAMNQWYEVNET--VDE 126

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            ELK+I+  ++ +I  ++PV    +  +D         L  + +D VR+V V     G +
Sbjct: 127 EELKNIQAYMDKVIWDDVPVEFSYIKGKD------YPDLRYQGHDFVRMVKV-----GEY 175

Query: 690 SSALCGGTHVSSTGEI 705
               CG  HV+ T EI
Sbjct: 176 DKQPCGTLHVNHTSEI 191


>gi|330967298|gb|EGH67558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 640

 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDLAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVS--VEYEDGGVHSSA----LCGGT 697
           ++  V+  +  R + I      +   ++ D ++R+V    + +  G++       +C G 
Sbjct: 130 KDYDVIKIVTPRAEVI-----EVFTARHEDYKLRLVEGMPDEQAMGLYYHEEYVDMCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|330892357|gb|EGH25018.1| putative alanyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 182

 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 27/184 (14%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q    GI VH+   +   L    S+V  +D   RR++   HSA+H++   L   + S   
Sbjct: 26  QVSVNGIIVHYVDGDTSHLEVGASIVGAVDILRRRKIEALHSASHIMEEFLFAEI-SGFE 84

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           + GS +     R D   +  +T+ +L  IE  +N+ I+ + P+ T + N           
Sbjct: 85  RVGSYVNEIKDRSDYNTASRLTADQLALIECKINEFISLDYPIETWLEN----------- 133

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                         ++Y   G   + +C GTH  ST  I  + +  ++  R G+ RIE  
Sbjct: 134 -------------DIKYWKCGPFKT-MCSGTHPPSTRHIGRVSLKRKNQGR-GLERIETT 178

Query: 727 TGQR 730
             +R
Sbjct: 179 LVER 182


>gi|257465911|ref|ZP_05630222.1| threonyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917067|ref|ZP_07913307.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690942|gb|EFS27777.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D    +  T  +L  IE+ +  +  
Sbjct: 70  IRHSAAHLMAQAVIRLFPGTKVTIGPAIE-NGFYYDFDPKEQFTEEDLTRIEEEMKKLSK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +++ V   +M+RE+AI       LG  Y   +     + E    +       LC G HV 
Sbjct: 129 EDIKVERFMMSREEAIEYFEK--LGEHYKVEIIKEIAKGEQLSFYRQGDFVDLCRGPHVP 186

Query: 701 STGEI 705
           STG I
Sbjct: 187 STGHI 191


>gi|219118712|ref|XP_002180123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408380|gb|EEC48314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 277

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 34/213 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT------DVQK----KAEGIFVHHAIVE- 561
           +  D+T  +A+ GGQ  D G       RL+IT      DV K    +  G+  H   +  
Sbjct: 52  ICLDRTVMHAQGGGQPTDVG-------RLEITATGVSVDVSKVLIDRETGVATHFGTLSG 104

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           +   R   ++ + ++   RR LS  H+A H++  A++   G  +    +    DG   + 
Sbjct: 105 KTPPRVGDAVTVKLNVSQRRILSECHTAGHVVDSAMARC-GKLMEPTKAYHFLDGPYVEY 163

Query: 622 THSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAA-----LLGTKY 672
             S PI   +  L+ +++    ++ +       I+++E+A  + +  A      L   K 
Sbjct: 164 KGSVPIEERDSVLQELQEAFCQLVDEGFDTKIDILSKEEADELCNRQAQNFDVNLFADKR 223

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             ++RVV+V            CGGTHV ST E+
Sbjct: 224 TQQIRVVTV------AGFPCPCGGTHVRSTTEL 250


>gi|89892986|ref|YP_516473.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense Y51]
 gi|89332434|dbj|BAE82029.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +    +   G  I  +G  +D       T  +L+ IE  +  ++ 
Sbjct: 74  LRHSTSHLMAEAVRNLFPGTILGIGPAID-NGFYYDFDSEHVFTPEDLEKIEAEMRRLVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           +N     + ++R DA+   +A   G KY   +        V+S+ Y  GG   + LC G 
Sbjct: 133 ENKRYERKEISRSDALQYFSAE--GEKYKVELIEDLPEDEVISM-YTQGGF--TDLCAGP 187

Query: 698 HVSSTG 703
           H+ STG
Sbjct: 188 HIPSTG 193


>gi|324993844|gb|EGC25763.1| threonine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324994835|gb|EGC26748.1| threonine--tRNA ligase [Streptococcus sanguinis SK678]
 gi|325687276|gb|EGD29298.1| threonine--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325696135|gb|EGD38026.1| threonine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327474719|gb|EGF20124.1| threonine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 647

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGTIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|317052582|ref|YP_004113698.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947666|gb|ADU67142.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 657

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 585 INHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HSA+H++  A+  + G   V       T +G  +D      +   +L+ IE  + +I 
Sbjct: 72  LRHSASHIMAQAVKDLFGGDKVKVAIGPSTSEGFYYDFDMEHRLVPEDLEKIETRMAEIA 131

Query: 644 AQNLPVVTRIMNREDAIAS--------GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           A + P V R M R +AI +            L     +D+V +    Y+ G      LC 
Sbjct: 132 AADQPFVCRKMERAEAINTFKQQGELFKVELLQQDILDDQVGI----YQQGSFLD--LCR 185

Query: 696 GTHVSSTGEI 705
           G H+ STG++
Sbjct: 186 GPHIPSTGKL 195


>gi|302661757|ref|XP_003022542.1| hypothetical protein TRV_03341 [Trichophyton verrucosum HKI 0517]
 gi|291186493|gb|EFE41924.1| hypothetical protein TRV_03341 [Trichophyton verrucosum HKI 0517]
          Length = 265

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 34/211 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA--EGIFVHHAIVERGILRTEM 569
           VV ++T F+ + GGQ  D G      G    +T V+  A  +G  +H             
Sbjct: 48  VVTEKTIFHPQGGGQPSDIGMITSPSGSSFTVTSVRMDALQDGQVLHFGRFGPSTFAPGE 107

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----------GSHVSQNGSCITPDGLR 618
            +   ID + R   S  H+A H+L  A+  ++            SH   + +C    GL 
Sbjct: 108 MVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKEVEGFEELKASHFPDSAACEF-RGL- 165

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYND 674
                   I      SI+D VN+ IA  +PV     + +D  + G   L+         +
Sbjct: 166 --------IEGKWKPSIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLIPDPTLVPPGE 217

Query: 675 RVRVVSV----EYEDGGVH--SSALCGGTHV 699
           + RVV++     Y  GG H  S+ LCG T V
Sbjct: 218 KSRVVNIVGAEVYPCGGTHVDSTDLCGQTTV 248


>gi|260911583|ref|ZP_05918168.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634289|gb|EEX52394.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 654

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVNDIIA 644
           HS+ HLL  AL  +        G  +  +G  +DV      PI+  +   IE+ + +   
Sbjct: 73  HSSAHLLAEALQALYPGIQFGFGPAVE-NGFFYDVMTKDGTPISENDFPKIEEKMREFAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTH 698
           ++  +V R +++ DA+    A   G +Y  +   + ++ EDG + + +      LC G H
Sbjct: 132 RDEAIVRREVSKADALKEFKAD--GQEY--KCEHIDLDLEDGTISTYSQGAFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + +TG I  + + S
Sbjct: 188 LMTTGPIKAIKLTS 201


>gi|293402007|ref|ZP_06646147.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304665|gb|EFE45914.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 399

 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 22/254 (8%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FY E+GG   D G  + + + L +    KK +G +V H +     ++ E ++ ++I+ 
Sbjct: 48  TIFYVESGGMASDIG-MMDNHMVLGL----KKKDG-YVWHLL----DVKLEGAVFMSINL 97

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R +    H+A HL+   LS +   H   +      + + FD        + EL+ +  
Sbjct: 98  HERFRKCQIHTAQHLISAVLSNVYKVHTLAHHVGDEENDVEFDFPDFNEKMAIELQVL-- 155

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N +I  +L V      R +A+A            D +R+V +     G     LCG  
Sbjct: 156 -CNGLIRDDLNVSILYPTRAEALAHLPQK---DVMRDDLRIVRI-----GALDYTLCGCM 206

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV S   + LL+I        G  +I+ + G +    +  + + L  ++  L +S   + 
Sbjct: 207 HVPSLRYLQLLFIRGFEKTNKGY-KIKYLVGDQLLDCVERRYKVLDEVSHSLAISHLYLD 265

Query: 758 GRVEEIWEEYRKLQ 771
             V  I  E RKL 
Sbjct: 266 TGVGRIINETRKLH 279


>gi|149185120|ref|ZP_01863437.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831231|gb|EDL49665.1| threonyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 671

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 36/201 (17%)

Query: 523 EAGGQLGDTGCAIGDGIRL---------QITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           E G    D   AIG G+           ++ D+ +  EG               E++LV 
Sbjct: 18  EPGSTPADVAAAIGPGLAKAAIAARVDGELRDINRPFEG-------------DAELALVT 64

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFDVTHS---KPITS 629
             D ++  +L+  H   H+L  A+ ++  G+ ++   +  T DG  +DV  S   +P + 
Sbjct: 65  GRDEKDALELA-RHDFAHVLAEAVQSLFPGTQITFGPA--TDDGFYYDVKASDTREPFSM 121

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +L +IE+ +  II  + P+   + +R+  I    A   G  +         E E+  V+
Sbjct: 122 DDLPAIEEEMRRIIKADKPLRREVWSRQQLIDKWEAE--GEVFKAEWAKELPEDEELTVY 179

Query: 690 SSA-----LCGGTHVSSTGEI 705
            S      +C G H++STG++
Sbjct: 180 WSGEDWLDMCRGPHLASTGKL 200


>gi|56696171|ref|YP_166527.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|73919826|sp|Q5LTX8|SYT_SILPO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56677908|gb|AAV94574.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 19/131 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H   H++  A+  I  +     G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  VRHDLAHIMARAVQEIWPATKVTIGPVIE-NGWYYDFDRAEPFTPEDLGLIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           +  PV T +  R  AI    A       N+  +V  +E          Y  G  H   LC
Sbjct: 133 KREPVTTEVWERTRAIEFYKAN------NEPYKVELIEAIPGTEPIRMYWHG--HWQDLC 184

Query: 695 GGTHVSSTGEI 705
            G H+  TG++
Sbjct: 185 RGPHLQHTGQV 195


>gi|312622904|ref|YP_004024517.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203371|gb|ADQ46698.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II ++
Sbjct: 75  HTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDIEESITREILEKIEEEMQKIIKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-------LCGGTHV 699
           L +    ++RE+AI      +     N +V +++ +  +G V S         LC G H+
Sbjct: 135 LKIERFELSREEAI----KLMQQRGENYKVELIN-DIPEGEVISFYKQGEFVDLCTGPHL 189

Query: 700 SSTGEIMLLYIVS 712
            STG +    ++S
Sbjct: 190 PSTGRVKAFKLLS 202


>gi|295397484|ref|ZP_06807567.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974284|gb|EFG50028.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 656

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I   G  +D    K IT  +L  IE  +  I+ 
Sbjct: 85  LRHSTAHLMAQAMKRLYPGIKFGVGPAIET-GYYYDTDQEKQITEEDLPVIEAEMAKIVK 143

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N P+  R + R    A         +Y   +     E E   V+S    + LC G HV 
Sbjct: 144 ENYPIERREVTR----AEANEIFADDEYKLEIIADLPEDETLTVYSQGEFTDLCRGIHVP 199

Query: 701 STGEIMLLYIVS 712
           STG I    ++S
Sbjct: 200 STGYIKEFKLLS 211


>gi|327490276|gb|EGF22064.1| threonine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGTIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|329767326|ref|ZP_08258851.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328836015|gb|EGF85706.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + L++  D        + H+  H+L  AL  + G  V          G  +D      ++
Sbjct: 56  LKLIVADDEDKDSLYVLRHTCAHVLAQALRRLYGKDVHFGVGPAIDGGFYYDFDAEYKVS 115

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEY 683
             + K+IE  V  II++N  +  R +++E+A+           L+     D V  V   Y
Sbjct: 116 EEDFKAIEKEVKKIISENHAIEGREVSKEEALEIFKEDPYKVELINDLPADEVITV---Y 172

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             G    + LC G HVS+T +I    ++S
Sbjct: 173 TQGDF--TDLCRGGHVSATSKIKEFKLLS 199


>gi|326563502|gb|EGE13765.1| threonyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326573810|gb|EGE23767.1| threonyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  +  +I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLDDMAKIEARMIQLIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|322377382|ref|ZP_08051873.1| threonine--tRNA ligase [Streptococcus sp. M334]
 gi|321281582|gb|EFX58591.1| threonine--tRNA ligase [Streptococcus sp. M334]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|297544949|ref|YP_003677251.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842724|gb|ADH61240.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTDRPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            ++IE  +N II ++  +   ++ ++ AI        G  Y   +     E E+   +  
Sbjct: 116 FEAIEQEMNKIIKEDYKLERFVLPKDKAIKLMEGK--GEPYKVELIKEIPEGEEISFYKQ 173

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G H+ STG +  + ++S
Sbjct: 174 GEFTDLCAGPHLMSTGMVKTIKLLS 198


>gi|326574765|gb|EGE24699.1| threonyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  +  +I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLDDMAKIEARMIQLIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|313764410|gb|EFS35774.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313772208|gb|EFS38174.1| threonyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313807564|gb|EFS46051.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313810073|gb|EFS47794.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313815947|gb|EFS53661.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313818605|gb|EFS56319.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820374|gb|EFS58088.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822822|gb|EFS60536.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825247|gb|EFS62961.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|313827535|gb|EFS65249.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|313830403|gb|EFS68117.1| threonyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313833773|gb|EFS71487.1| threonyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314915402|gb|EFS79233.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918317|gb|EFS82148.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920127|gb|EFS83958.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314925261|gb|EFS89092.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314931649|gb|EFS95480.1| threonyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955705|gb|EFT00107.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958104|gb|EFT02207.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314959956|gb|EFT04058.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314973405|gb|EFT17501.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976084|gb|EFT20179.1| threonyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314978527|gb|EFT22621.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314983896|gb|EFT27988.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|314988078|gb|EFT32169.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314989885|gb|EFT33976.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315085609|gb|EFT57585.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088339|gb|EFT60315.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315095950|gb|EFT67926.1| threonyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|315101418|gb|EFT73394.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315105605|gb|EFT77581.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315108634|gb|EFT80610.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327326232|gb|EGE68022.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327443095|gb|EGE89749.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
 gi|327445877|gb|EGE92531.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448141|gb|EGE94795.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|327450737|gb|EGE97391.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327453921|gb|EGF00576.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753425|gb|EGF67041.1| threonyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328754156|gb|EGF67772.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328760808|gb|EGF74374.1| threonine--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|306825714|ref|ZP_07459053.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432075|gb|EFM35052.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|326562776|gb|EGE13071.1| threonyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326563180|gb|EGE13448.1| threonyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  +  +I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLDDMAKIEARMIQLIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|167037181|ref|YP_001664759.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115599|ref|YP_004185758.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856015|gb|ABY94423.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928690|gb|ADV79375.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTDRPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            ++IE  +N II ++  +   ++ ++ AI        G  Y   +     E E+   +  
Sbjct: 116 FEAIEQEMNKIIKEDYKLERFVLPKDKAIKLMEGK--GEPYKVELIKEIPEGEEISFYKQ 173

Query: 692 A----LCGGTHVSSTGEIMLLYIVS 712
                LC G H+ STG +  + ++S
Sbjct: 174 GEFTDLCAGPHLMSTGMVKTIKLLS 198


>gi|312128091|ref|YP_003992965.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778110|gb|ADQ07596.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II ++
Sbjct: 75  HTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDVEESITMELLEKIEEEMQKIIKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           L +    ++RE+A+        G  Y     ND     ++ +   G     LC G H+ S
Sbjct: 135 LKIERFELSREEAVKLMQEK--GENYKVELINDIPEGETISFYRQGEFVD-LCTGPHLPS 191

Query: 702 TGEIMLLYIVS 712
           TG +    ++S
Sbjct: 192 TGRVKAFKLLS 202


>gi|297565426|ref|YP_003684398.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849875|gb|ADH62890.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 652

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 11/132 (8%)

Query: 585 INHSATHLLHHALSTILGSH------VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             H+  H+L  A+     +       V      +  +G  +D+   +P+   +L  IE  
Sbjct: 70  FRHTLAHVLAQAVREFFAAKGFDPDAVKLAIGPVIENGFYYDIDPPEPLGEGDLPEIEAR 129

Query: 639 VNDIIAQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEY--EDGGVHS-SAL 693
           ++ I+ +NL +   ++ RE+A+    G          D    V + +  +  G H  + L
Sbjct: 130 MHQIVKENLELRRFVLPREEALRRFEGKDPYKTELIQDLPEGVEISFYAQGEGTHGFTDL 189

Query: 694 CGGTHVSSTGEI 705
           C G HV STG I
Sbjct: 190 CRGPHVPSTGRI 201


>gi|327331893|gb|EGE73630.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA3]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|326572997|gb|EGE22976.1| threonyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+   +P T  ++  IE  +  +I 
Sbjct: 71  IRHSTAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSERPFTLDDMAKIEARMIQLIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA---LCGGTHVS 700
           Q+  V+ ++  R++ I +      G  Y  R V  +  E   G  H      +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIKTFLER--GETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|149182849|ref|ZP_01861310.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849464|gb|EDL63653.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D+++  ++ + HS  HL+  A+   L   V      +   G  +D+     IT  +
Sbjct: 62  IVTPDHEDALEV-LRHSTAHLMAQAIKR-LYPDVKLGIGPVIDGGFYYDIDTEHSITPED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L  IE  +  I   NL V+ + ++R++A        +  + +D  ++  +E         
Sbjct: 120 LPKIEKEMKKIAESNLEVIRKEVSRDEA------QKMYEEVSDEYKIELLEAIPEGEQVS 173

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            YE G      LC G HV STG+I    ++S
Sbjct: 174 IYEQGDFFD--LCRGIHVPSTGKIKEFKLLS 202


>gi|104781106|ref|YP_607604.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123079219|sp|Q1IC15|SYT_PSEE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|95110093|emb|CAK14798.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 640

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPDDLAAIEKRMQQLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            +  VV ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 TDYDVVKKMTPRAEVIDVFTSR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|78184510|ref|YP_376945.1| threonyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123757112|sp|Q3AYC6|SYT_SYNS9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78168804|gb|ABB25901.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           sp. CC9902]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +VL    ++ + L I HS +H++  A+  +  +     G   T  G  +D  + +P T 
Sbjct: 22  PVVLPKTSESEQLLKIRHSMSHVMAMAVQKLFPNAQVTIGPW-TETGFYYDFDNPEPFTE 80

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGG 687
            +LK+I+  +  II + LP+    ++R++A     A     K    +R++     Y  G 
Sbjct: 81  DDLKAIKKEMGKIIGRKLPLERIEVSRDEAETRIKAQNEPYKLEILERLQEPITLYTLGD 140

Query: 688 VHSSALCGGTHVSSTGEI 705
                LC G HV +T E+
Sbjct: 141 -QWWDLCAGPHVENTKEL 157


>gi|313792096|gb|EFS40197.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801952|gb|EFS43186.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313812897|gb|EFS50611.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
 gi|313838778|gb|EFS76492.1| threonyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314962753|gb|EFT06853.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315077970|gb|EFT50021.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327453186|gb|EGE99840.1| threonyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|255078740|ref|XP_002502950.1| predicted protein [Micromonas sp. RCC299]
 gi|226518216|gb|ACO64208.1| predicted protein [Micromonas sp. RCC299]
          Length = 346

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 19/205 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           VV D+T  Y   GGQ  DTG  +G  G+   +  V    +G   H    E         +
Sbjct: 121 VVLDRTVAYPAGGGQPSDTGRIVGPGGVAFVVASVASTKDGTVTHLGEFEEEGAAPFNAD 180

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTI-LGSHVSQNGSCI-TPDGLRFDVTH--- 623
             +++T+D   R   +  HSA HLL  A++ I  G  V      +  PD    + T    
Sbjct: 181 DEVIVTVDADKRLLHARIHSAGHLLDVAMTNIGFGPDVMVPAKGLHQPDQAYVEYTGKVE 240

Query: 624 --SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RVVS 680
              K    A+LK+    +N +++        +M  ++A  +    L      D   R+V+
Sbjct: 241 GLDKDKLMADLKA---EMNKLVSLGGGSAAAMMGYDEAAEACGGELPSYIPKDSTPRIVT 297

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEI 705
           +  +  G      CGGTHV++  EI
Sbjct: 298 IVPDTAGCP----CGGTHVANVKEI 318


>gi|315084265|gb|EFT56241.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|328754594|gb|EGF68210.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|315098581|gb|EFT70557.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|315080595|gb|EFT52571.1| threonyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|325694840|gb|EGD36745.1| threonine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|314923371|gb|EFS87202.1| threonyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|315093365|gb|EFT65341.1| threonyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|315103379|gb|EFT75355.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327327544|gb|EGE69320.1| threonine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|148560208|ref|YP_001259002.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|148371465|gb|ABQ61444.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 109 IRHDTAHVLAEAVQELFPGTQVTIGPVIE-NGFYYDFARNEPFTLDDLPVIEKKMCEIIQ 167

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHV 699
           +N P    + +RE A  + S        +  D +     + + Y+        LC G H+
Sbjct: 168 RNKPFTKEVWSREKAKQVFSDKGESYKVELVDAIPAGQDLKIYYQGDWFD---LCRGPHM 224

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 225 ASTGQI 230


>gi|124804231|ref|XP_001347941.1| threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23496195|gb|AAN35854.1|AE014840_2 threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1013

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 35/189 (18%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPITSAELKSIEDNVNDI 642
           HS+ H+L  +L  + G  ++     I P   +G  +D+  ++  I + + K IED  N +
Sbjct: 362 HSSAHILGSSLEKLFGGFLT-----IGPALKEGFYYDIFLNNFSINNEDYKRIEDEFNKL 416

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCG------ 695
           +  N+P        E  I +   AL    YN  ++ ++  +  D    S   CG      
Sbjct: 417 VKDNVPF-------EKVICTKEEALELFDYNPFKLELIRSKIPDNKKTSVYRCGNFIDLC 469

Query: 696 -GTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            G H+ +TG++    ++  SS           ++R+  I+ Q+ +S L+   E LK L  
Sbjct: 470 LGPHIKNTGKVKTFKVLKNSSAYWLGQKENDSLQRVYGISFQK-KSELV---EYLKFLEE 525

Query: 748 FLKVSQGNV 756
             K    NV
Sbjct: 526 AKKRDHRNV 534


>gi|313223171|emb|CBY43396.1| unnamed protein product [Oikopleura dioica]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGGTH+        L I +E +I  GIRR+ A+TG  A       D + + LA   
Sbjct: 7   SVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEK----ADRQAQRLAKAN 62

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISE----- 803
           ++ + +V     E+ E  +      A +R + L  +  + +K   +  M + +++     
Sbjct: 63  QLKEKDVNELKAEVKEAIKAKNTAEANQRAISLGWKSFNMNK--RLKSMEYALNKLKSVL 120

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           +++K L  ++    KK     ++L       K  VL +          A +    S   L
Sbjct: 121 INNKVLNEILKLYAKKSPKSHVLLFSADHTAK-KVLCLAQTPKGSTLKANEWVS-SISPL 178

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             G GGG+   AQ+ G N +    A+A    F
Sbjct: 179 IDGRGGGKDVQAQASGKNVSGLKGALAKAKEF 210


>gi|300727911|ref|ZP_07061289.1| alpha-amylase family protein [Prevotella bryantii B14]
 gi|299774753|gb|EFI71367.1| alpha-amylase family protein [Prevotella bryantii B14]
          Length = 719

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            N+ +    H+A HLL+  +  + G   S N            +   KP +  E K IE 
Sbjct: 573 HNKDEFPPAHTAEHLLNQLMVRMFGCERSHNAHIERKKSKISYILDHKP-SRQEEKEIER 631

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +  +I  +L V   + +R D         L +   D VR+V +     G +    C G 
Sbjct: 632 TMKQLIEDDLDVTYELKSRYDLPEGIQLDSLPSNAPDMVRLVRI-----GDYDVCPCIGK 686

Query: 698 HVSSTGEI 705
           HV STG+I
Sbjct: 687 HVRSTGQI 694


>gi|94495624|ref|ZP_01302204.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94425012|gb|EAT10033.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 587 HSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIA 644
           H   H+L  A+  +  G+ ++   +  T DG  +D     +P T  +L +IE  +  IIA
Sbjct: 74  HDFAHVLAEAVQALFPGTQITFGPA--TEDGFYYDFAPKDRPFTEEDLPAIEAEMRKIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSA----LCGG 696
            + P+   +++R+  IA   AA    K      +   E    Y  G   S      +C G
Sbjct: 132 ADKPLKREVIDRDTLIAQWEAAGETFKAQWAAELPQGEELTVYHSGAPGSEGSWYDMCRG 191

Query: 697 THVSSTGEI 705
            H++STG++
Sbjct: 192 PHLASTGKL 200


>gi|327461002|gb|EGF07335.1| threonine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|314966718|gb|EFT10817.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|289425232|ref|ZP_06427009.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
 gi|289154210|gb|EFD02898.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
          Length = 684

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 70  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 128

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 129 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 188

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 189 AWKD-------LCRGPHVPST 202


>gi|46581568|ref|YP_012376.1| alanyl-tRNA synthetase family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450991|gb|AAS97636.1| alanyl-tRNA synthetase family protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235211|gb|ADP88065.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris RCH1]
          Length = 218

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)

Query: 502 VEEAVSGQKVEVV-FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            E  V+G + +V+  D+T  +A +GGQ  D G   G  I   +       + + +++ + 
Sbjct: 16  TEAVVTGVENDVITLDRTVAFAFSGGQESDRGTIAGHAILKAVKG--SPCDPLELYYTLP 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     + + ID + RR+L   H A  L+   ++     H  + G+ I+PD  R D
Sbjct: 74  AGHGLTPGSRVTVCIDGEARRRLVRLHFAAELVLELVNRHY-DHPEKTGAHISPDKARLD 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 I+ A    + + ++ ++A +LP+ +   +                 +  VR  S
Sbjct: 133 FAWQGNISVA-FPMLHERLSALVAADLPIESSFEDE----------------STEVRYWS 175

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEI 705
           +E       +   CGGTH +STG +
Sbjct: 176 IEG-----FARVRCGGTHPASTGAV 195


>gi|282853974|ref|ZP_06263311.1| threonine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583427|gb|EFB88807.1| threonine--tRNA ligase [Propionibacterium acnes J139]
          Length = 684

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 70  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 128

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 129 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 188

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 189 AWKD-------LCRGPHVPST 202


>gi|238024250|ref|YP_002908482.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia glumae BGR1]
 gi|237878915|gb|ACR31247.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia glumae BGR1]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 48/201 (23%)

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +TPF+ + GGQ  DTG  IG    L +      AEG  V H   +R +     +  + +D
Sbjct: 35  ETPFHPQGGGQPSDTG-RIGAARVLHVA-----AEGEAVVHR-TDRAV--APGAAAVEVD 85

Query: 577 YQNRRQLSINHSATHLLHHALS-----TILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              R   +  HSA HL+ +A +      + G H       +   G       ++PI   +
Sbjct: 86  AAPRALHARLHSAGHLIGYAAAASGWRAVKGHHWPGEARVVFEPG-----EGARPI---D 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHS 690
            +++   VN ++A  LP  TR+                    D +RV+   ++E  G   
Sbjct: 138 AETLAREVNAVVAAALPRTTRM-------------------RDGMRVIGFGDFEAQG--- 175

Query: 691 SALCGGTHVSSTGEIMLLYIV 711
              CGGTHV+S+ ++  + IV
Sbjct: 176 ---CGGTHVASSAQVGRIVIV 193


>gi|50842554|ref|YP_055781.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289426579|ref|ZP_06428319.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|295130636|ref|YP_003581299.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
 gi|73919815|sp|Q6A8U3|SYT_PROAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50840156|gb|AAT82823.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289160223|gb|EFD08387.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|291376551|gb|ADE00406.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
          Length = 684

 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 70  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 128

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 129 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 188

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 189 AWKD-------LCRGPHVPST 202


>gi|323351205|ref|ZP_08086861.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322122429|gb|EFX94140.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDQAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|307702092|ref|ZP_07639099.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307707425|ref|ZP_07643907.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616377|gb|EFN95568.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616579|gb|EFN95769.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|301117852|ref|XP_002906654.1| alanyl-tRNA synthetase domain-containing protein 1, putative
           [Phytophthora infestans T30-4]
 gi|262108003|gb|EEY66055.1| alanyl-tRNA synthetase domain-containing protein 1, putative
           [Phytophthora infestans T30-4]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 25/259 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI---LRTE 568
           E+    T  + E GGQ  DTG    DG+++    VQ   +G  +H   V+ G        
Sbjct: 69  ELELHDTVLFPEGGGQPWDTGNI--DGVQVDQVYVQ---DGRCLHRIPVKDGAKAPFVEG 123

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +V  +D+  R      HSA HL      + +      + +  +    R +V   K + 
Sbjct: 124 QEVVAVVDWARRFDHMQQHSAQHLF-----SAVAERYGYDTTTWSLGEERCNVELEKNVI 178

Query: 629 SAE-LKSIEDNVNDIIAQNL---PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
            +E L+ IE+ VN  I  +L   P   +   +E      AA     +    +R+V+++  
Sbjct: 179 PSETLQKIEEEVNQAIVSSLTMTPSFAKPGTKE--WEKIAAKFDPGQMPKAMRIVTIDGL 236

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        C GTHV +  ++  L ++S    R G  R+  + G+R         +   +
Sbjct: 237 DVNP-----CCGTHVQNLAQLRSLRVLSTELAR-GASRVWFVAGERVNREFSRMLKNEHA 290

Query: 745 LASFLKVSQGNVVGRVEEI 763
           L   L  +  +   RVE++
Sbjct: 291 LTKLLSSAPDDHASRVEKL 309


>gi|125718378|ref|YP_001035511.1| threonyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166225508|sp|A3CP56|SYT_STRSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125498295|gb|ABN44961.1| Threonyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQSEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|19074578|ref|NP_586084.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74697534|sp|Q8SRH2|SYTC_ENCCU RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19069220|emb|CAD25688.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 640

 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 11/149 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L +AL  +       +G  I  +G  +DV  + PI+S + + IE+ +  I+ +N
Sbjct: 75  HSSAHVLGNALVNLYPDAKLVHGPPIE-EGFFYDVDVTDPISSEDYEKIEEEMVKIMKKN 133

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                 I ++E+ + +       T +  + V   S  Y +G      +C G H+ STG I
Sbjct: 134 YRFERVIKSKEELLEAYRDNPCKTHFIMKGVDKESSVYRNGDFFD--MCLGPHIRSTGVI 191

Query: 706 MLLYIVSESSIR-------AGIRRIEAIT 727
             + ++  SS           ++RI AIT
Sbjct: 192 KAVKVLKNSSAYFLNDPNLKSLQRIYAIT 220


>gi|325690794|gb|EGD32795.1| threonine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|314981048|gb|EFT25142.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315091876|gb|EFT63852.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
          Length = 689

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|328946743|gb|EGG40881.1| threonine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N+P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENVPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|312868227|ref|ZP_07728427.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311095972|gb|EFQ54216.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDQAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSDDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|114767278|ref|ZP_01446118.1| threonyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540584|gb|EAU43657.1| threonyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 649

 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  +T  G  +D   ++P T  +L  IE  + DII 
Sbjct: 74  IRHDLAHVMARAVQEIWPDTKVTIGP-VTEHGWFYDFDRAEPFTPEDLGQIEAKMKDIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSV--EYEDGGVHSSALCGGTH 698
              PV T I  R+ A A       G  Y     DR+   +    Y  GG     LC G H
Sbjct: 133 AREPVTTEIWERDRARAFYEEN--GEPYKVELVDRIPEGAPIRMYWHGGWQD--LCRGPH 188

Query: 699 VSSTGEI 705
           +  TG++
Sbjct: 189 LQHTGQL 195


>gi|282881717|ref|ZP_06290380.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304476|gb|EFA96573.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  I  +G  +DV   +   I+  +   IE  + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAIE-NGFFYDVMPKEGTTISETDFPKIEAKMMELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N PVV R +++ DA+        G  Y  +   +  + EDG +      H + LC G H
Sbjct: 132 KNEPVVRRNISKADALKEFQED--GQDY--KCEHIDQDLEDGTISTYTQGHFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LLSTGLIKAVKITS 201


>gi|289578715|ref|YP_003477342.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528428|gb|ADD02780.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 635

 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 72/151 (47%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTDRPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
            ++IE  +N II ++  +   ++ +++AI       L  + ++  +V  ++         
Sbjct: 116 FEAIEQEMNKIIKEDYKLERFVLPKDEAIK------LMEEKDEPYKVELIKEIPEGEEIS 169

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G    + LC G H+ STG +  + ++S
Sbjct: 170 FYKQGEF--TDLCAGPHLMSTGMVKTIKLLS 198


>gi|296117435|ref|ZP_06836023.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976037|gb|EFG82827.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 642

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+ ++        G  I  +G  +D   ++P T  +   IE  + +I+ 
Sbjct: 71  IRHDAAHVLAEAVQSLWPGTQVTIGPSIE-NGFYYDFYRNEPFTPEDFPRIEARMREIVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            N P       RE+AI        G ++   +     E E+  ++       LC G H+ 
Sbjct: 130 ANAPFTRETWPREEAIRFFEER--GERFKAELIRDLPEDEEISIYRQGEWLDLCRGPHLR 187

Query: 701 STGEI 705
            TG+I
Sbjct: 188 GTGDI 192


>gi|257452295|ref|ZP_05617594.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317058838|ref|ZP_07923323.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313684514|gb|EFS21349.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D    +  T  +L  IE+ +  +  
Sbjct: 70  IRHSAAHLMAQAVIRLFPGTKVTIGPAIE-NGFYYDFDPKEQFTEEDLIRIEEEMKKLSK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +++ V   +M+RE+AI       LG  Y   +     + E    +       LC G HV 
Sbjct: 129 EDIKVERFMMSREEAIEYFEK--LGENYKVEIIKEIAKGEQLSFYRQGDFVDLCRGPHVP 186

Query: 701 STGEI 705
           STG I
Sbjct: 187 STGHI 191


>gi|255527935|ref|ZP_05394777.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|255508362|gb|EET84760.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
          Length = 238

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 19/209 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T FY   GGQ  D G  + +  + +    + K +G  ++H I  +     EM   
Sbjct: 29  VILDRTAFYIGGGGQPCDVG--VLETAKDKYVVKKVKKKGNDIYHYIDGKLPEVNEMC-T 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+++R +L   H+A H+L   +     + V+          + F+  +        +
Sbjct: 86  GKIDWEHRYKLMRTHTAMHILCGVVWRDYKAQVTGGDMDCLKGRMDFEFEN---FDKELV 142

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDG 686
           + IE+ VN  +     +   I+ RE+A       L+ TK N       ++R V +E    
Sbjct: 143 EEIEEKVNKEVQSKRELKVNILEREEAFK--IPDLIRTKINLLPEGIKQIRTVEIE---- 196

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G+   A  GGTHV +T E+  + IV   S
Sbjct: 197 GLDLQAD-GGTHVKNTSEVGKIKIVDYKS 224


>gi|93007241|ref|YP_581678.1| threonyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|123264359|sp|Q1Q809|SYT_PSYCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|92394919|gb|ABE76194.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Psychrobacter
           cryohalolentis K5]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+    P T   + +IE  + ++I 
Sbjct: 71  IRHSCAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSETPFTPEHMAAIEKRMMELIK 129

Query: 645 QNLPVVTRIMNREDAI 660
           Q+  V+ +I  R + I
Sbjct: 130 QDYDVIKKITPRAEVI 145


>gi|322389968|ref|ZP_08063508.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321143404|gb|EFX38842.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|83594299|ref|YP_428051.1| alanyl-tRNA synthetase related protein [Rhodospirillum rubrum ATCC
           11170]
 gi|83577213|gb|ABC23764.1| alanyl-tRNA synthetase related protein [Rhodospirillum rubrum ATCC
           11170]
          Length = 214

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 30/215 (13%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+  +T  YA +GGQ  D G   G  +      +  + +G+ + + +     L     +
Sbjct: 26  EVMVGETILYAFSGGQESDHGTIGGRPV------LGARKDGLTILYDLGPDHGLSPGDPV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D+  R +L   H A  ++   +    G  + + G+ I PD  R D T    I    
Sbjct: 80  GLVLDWSRRYRLMRLHFAAEIILELVMRDFGP-LEKTGAHIAPDKARIDFTWEGSIAPI- 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
             S+ ++   +IA++LP++T       A +  A+     +     RV             
Sbjct: 138 FPSLLESSGAVIARDLPIIT-------AFSDEASQRRYWEIEGFARVP------------ 178

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             CGGTH   TGEI  L +    +I  G  RIE +
Sbjct: 179 --CGGTHPRRTGEIGPLAL-KRKNIGKGRERIEVL 210


>gi|85111753|ref|XP_964087.1| hypothetical protein NCU00535 [Neurospora crassa OR74A]
 gi|28925852|gb|EAA34851.1| hypothetical protein NCU00535 [Neurospora crassa OR74A]
          Length = 272

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 39/215 (18%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKA--EGIFVHHAIVE---RGILR 566
           +V DQT F+ + GGQ  D G   +GD    +++ V+  A  +G  +H    +     I +
Sbjct: 52  IVTDQTIFHPQGGGQPSDEGVMTMGDVSVFRVSMVRMDAVKDGQVLHFGRFDSSSSSIFQ 111

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----------GSHVSQNGSCITPD 615
              ++  +ID + R   S  H+A H+L  A+  +L            SH   + +C    
Sbjct: 112 LGDTVEQSIDVEKRLLYSRLHTAGHVLGAAVRHLLEKEIPGFDELKASHFPDSAAC---- 167

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL------- 668
                      I     + I+  V++ I + +PV     + ED   +G   L+       
Sbjct: 168 ------EFQGSIEGRWKEPIQQKVDEYIDKAMPVEVDFWDEEDFRKNGLERLIPDRSLAP 221

Query: 669 -GTKYNDRVRVVSVE-YEDGGVH--SSALCGGTHV 699
            G K+   V++V  E Y  GG H  ++ LCG T V
Sbjct: 222 PGEKFR-VVKIVGAEVYPCGGTHVDTTDLCGKTTV 255


>gi|257455909|ref|ZP_05621126.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257446655|gb|EEV21681.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 642

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L   V      +  +G  +D+   +P T  +++ IE  +  +I 
Sbjct: 71  IRHSTAHLLGHAVKQ-LYPEVKMVIGPVIEEGFYYDIYSERPFTPEDMEKIEARMTQLIN 129

Query: 645 QNLPVVTRIMNREDAI 660
           Q+  V+ ++  R++ I
Sbjct: 130 QDYDVIKKMTPRDEVI 145


>gi|291287861|ref|YP_003504677.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885021|gb|ADD68721.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           I HS  HL+ HA+  +    V      I  DG  +D     +  T  +LK+IE  +  I 
Sbjct: 70  IRHSTAHLMAHAVKRLFDD-VKVTIGPIIKDGFYYDFDMGDRKFTPDDLKAIEKMMAKIA 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A+ +PV  R +   DA+   A      +    +    V   D G  +  LC G HV +T 
Sbjct: 129 AEAIPVKRRDVKSSDALKEFADEKYKVELITDIGDEHVSLYDQGDFTD-LCRGPHVDNTK 187

Query: 704 EIMLLYIVS 712
            +    ++S
Sbjct: 188 RLKHFKLLS 196


>gi|225387532|ref|ZP_03757296.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
 gi|225046368|gb|EEG56614.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
          Length = 584

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H+A+H+L  A+  +        G  I  DG  +D       T  +L+ +E  +  I+
Sbjct: 19  AIRHTASHVLAQAVKRLYPETKLAIGPAID-DGFYYDFDREGGFTPEDLEKLEGEMMKIV 77

Query: 644 AQNLPVVTRIMNREDAI 660
            +NLPV   ++ R++AI
Sbjct: 78  KENLPVKPFVLPRDEAI 94


>gi|317131189|ref|YP_004090503.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469168|gb|ADU25772.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 645

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 15/151 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D  + ++ + NH+A+H+L  A+  +        G  I  DG  +D       T  E
Sbjct: 59  LLTFDDPDGKK-AFNHTASHILAQAVKRLYPEVKLTIGPAIE-DGFYYDFDSDLSFTQEE 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHS 690
           L  IE  +  I+ ++LP+      R    A  A  L+  K    +V +++     G   S
Sbjct: 117 LAKIEAEMKKIVKEDLPI-----ERFTLPAPEAVKLMEEKSEPYKVELINEHAGKGEPIS 171

Query: 691 -------SALCGGTHVSSTGEIMLLYIVSES 714
                  + LC G H+  TG +    + S +
Sbjct: 172 FYKQGEFTELCAGPHLPDTGRVKAFKLTSST 202


>gi|296446450|ref|ZP_06888394.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296256085|gb|EFH03168.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 643

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   HLL  A+  +        G  I  +G  +D   S+P T  +L +IE  + +I+A
Sbjct: 71  IRHDCAHLLAEAVQELFPGTQVTIGPVIE-NGFYYDFYRSEPFTPDDLPAIEKKMREIVA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGG 696
           ++  +   +  R+       A    T   +  +   +E   GG         H   LC G
Sbjct: 130 RDAAITKEVWTRDQ------AKTFFTARGEAFKRELIESIPGGEDLKIYRQGHWLDLCRG 183

Query: 697 THVSSTGEI 705
            H+ S G++
Sbjct: 184 PHLPSIGKV 192


>gi|324991486|gb|EGC23419.1| threonine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|314936214|ref|ZP_07843561.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654833|gb|EFS18578.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 645

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  I G      G  I   G  +D    + ++S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRIYGDVKFGVGPVIE-GGFYYDFDMDEKVSSDDFEKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N  +  ++++RE+A            Y  ++ ++    ED  V        + LC G H
Sbjct: 132 ENYKIERKVVSREEA----KDFFKDDPY--KLELIDAIPEDENVTLYTQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTSKIKEFKLLS 199


>gi|304382923|ref|ZP_07365405.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304335948|gb|EFM02196.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 654

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  I  +G  +DV       I+  +   IE+ + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAIE-NGFFYDVMPKDGVAISENDFPKIEEKMRELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCGGTH 698
           ++ PVV R +++ DA+        G +Y  +V  + ++  DG + +      + LC G H
Sbjct: 132 KDEPVVRRDISKADALKEFKED--GQEY--KVEHIDLDLADGTISTYTQGAFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LVSTGAIKAIKITS 201


>gi|71066652|ref|YP_265379.1| threonyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|123775558|sp|Q4FPW3|SYT_PSYA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71039637|gb|AAZ19945.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychrobacter
           arcticus 273-4]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+    P T   + +IE  + ++I 
Sbjct: 71  IRHSCAHLLGHAVKQLYPDVKMVIGPVID-DGFYYDIYSETPFTPEHMAAIEKRMMELIK 129

Query: 645 QNLPVVTRIMNREDAI 660
           Q+  V+ +I  R + I
Sbjct: 130 QDYDVIKKITPRAEVI 145


>gi|313890276|ref|ZP_07823910.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121381|gb|EFR44486.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 648

 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D    +  I++ 
Sbjct: 59  IVTPDHEDAFDI-LRHSAAHLFAQAAKRLFPDIHLGVGPAIA-DGFYYDTDNQAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDG 686
           +L  IE+ +  I+ +N P + + +++E+A+           L  +++D    +++ Y  G
Sbjct: 117 DLPRIEEEMKKIVKENHPCIRQEVSKEEALEIFKDDPYKIELINEHSDDAAGLTI-YRQG 175

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I + ++++
Sbjct: 176 EF--VDLCRGPHVPSTGRIQVFHLLN 199


>gi|327330301|gb|EGE72050.1| threonine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 689

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 31/141 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L   E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSEFEKRMKRIVK 133

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +N   V R+   E A                    A GA+  +G    T Y++  R   V
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 682 EYEDGGVHSSALCGGTHVSST 702
            ++D       LC G HV ST
Sbjct: 194 AWKD-------LCRGPHVPST 207


>gi|331266854|ref|YP_004326484.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683526|emb|CBZ01144.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|293364941|ref|ZP_06611658.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703194|ref|ZP_07640140.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316391|gb|EFE56827.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623269|gb|EFO02260.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV---HSSA---LCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+   H      LC G H+ STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYHQGEYVDLCRGPHIPSTGRIQIFHLL 198


>gi|198471548|ref|XP_001355657.2| GA10567 [Drosophila pseudoobscura pseudoobscura]
 gi|198145967|gb|EAL32716.2| GA10567 [Drosophila pseudoobscura pseudoobscura]
          Length = 434

 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 35/259 (13%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EA   +   VV + T  + E GGQ  D G   G  +R  +       +G    H +    
Sbjct: 38  EARPVRGFNVVCEDTILFPEGGGQPCDYGTINGQPVRRVLR------KGNIAVHFVESSS 91

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITP 614
                  +  ++D+  R      HS  HL+         +   S  LGS+VS        
Sbjct: 92  SFEEGAEVHQSLDWDRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSNVSH------- 144

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYN 673
             ++ +  H   I+   L  IE   N++I +  PV   +++ E D   + A A  G   +
Sbjct: 145 --IQLNTPHL--ISRESLDLIERQANELIREGRPVSVVLVDPEVDEEFNDARAPRGLPKD 200

Query: 674 DR--VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                RVV +E    G+ S+ +C GTHV+   ++  + ++    ++  I  +  + G+R 
Sbjct: 201 HEGLARVVRIE----GIESN-MCCGTHVTDLSQLQCIKLLYAEKVKTNI-LVHFVVGERV 254

Query: 732 RSHLMGQDEKLKSLASFLK 750
              L    ++ + L + LK
Sbjct: 255 LRKLGEVFQREQQLTTALK 273


>gi|324520304|gb|ADY47605.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 283

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 46/247 (18%)

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFL 749
            CGGTH+ + G I  L I  E +I  G RRI A+TG  A   +   D    ++++   F+
Sbjct: 37  FCGGTHLHNVGHIGRLVISVEEAIAKGTRRIVALTGPEAVRAVQRADRIEARVRAAQKFV 96

Query: 750 KVSQGNVVGR---------VEEIWEEYRKLQLIHAKR---------------KLQLNVED 785
              +  V  R         V E+ EE  + QL + ++               KL+ + + 
Sbjct: 97  ANDRSIVTDRKRFKDANKMVNELIEEINQAQLPYWRKDEIREEAKGIQKLLDKLERDAKA 156

Query: 786 LSCHKIAD------------VNFMSHIISE-VDSKELKSVMDALQKKIQSGIIMLVGISK 832
               K+ +              F+ H+  +    K L + + +L+K   +  +M   ++ 
Sbjct: 157 AVTEKVMNEAKQLEGTLNDHTKFIVHVFGKGATGKALDAALKSLKK---APAVMGFSVN- 212

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E+   V IV   D       +      +KV  + GG GGG+   AQ+ G   ++  +A+ 
Sbjct: 213 EETGKVTIVAKVDKASVAAGLKAPEWISKVCEVVGGRGGGKDMQAQATGDRIDRVPEAVQ 272

Query: 891 GVASFLK 897
               F K
Sbjct: 273 LANDFAK 279


>gi|322372498|ref|ZP_08047034.1| threonine--tRNA ligase [Streptococcus sp. C150]
 gi|321277540|gb|EFX54609.1| threonine--tRNA ligase [Streptococcus sp. C150]
          Length = 648

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|91205350|ref|YP_537705.1| threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122990926|sp|Q1RJ48|SYT_RICBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91068894|gb|ABE04616.1| Threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 635

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  ++++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAIE-NGYYYDFARDKPFTTDDLAVIEAKMHELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N  V   + +RE A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEKVTRELWDREKAVEFFKS--IGEHYKAEIIASIPSNEPISLYRQGNFIDLCRGPHAP 187

Query: 701 STG 703
           STG
Sbjct: 188 STG 190


>gi|15895629|ref|NP_348978.1| threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|22654130|sp|Q97GK4|SYT_CLOAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15025373|gb|AAK80318.1|AE007736_8 Threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509777|gb|ADZ21413.1| threonyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ +  ++ H+A+H+L  A+  +        G  I   G  +D+      T   
Sbjct: 59  ILTFDDEDGK-WTLRHTASHILAQAIKRLYPEAKLAIGPAID-SGFYYDIDADFSFTEEM 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              IE  +N II +NL +    + RE AI      +   K   +V ++    ED  +   
Sbjct: 117 FAKIEKEMNKIIKENLKLERFELPREKAIEY----MEEKKEPYKVELIKDLPEDAVISFY 172

Query: 692 A------LCGGTHVSSTGEIMLLYIVS 712
                  LC G HV ST ++ ++ ++S
Sbjct: 173 KQGEFVDLCAGPHVESTAKVKVIKLMS 199


>gi|157150881|ref|YP_001450077.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083628|sp|A8AWB7|SYT_STRGC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157075675|gb|ABV10358.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|302840929|ref|XP_002952010.1| hypothetical protein VOLCADRAFT_92618 [Volvox carteri f.
           nagariensis]
 gi|300262596|gb|EFJ46801.1| hypothetical protein VOLCADRAFT_92618 [Volvox carteri f.
           nagariensis]
          Length = 829

 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 117/300 (39%), Gaps = 60/300 (20%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTG----CAIGD---GIR----LQITDVQKKAEGIFVH-- 556
           + EV   +TP + E+GGQ  D G        D   G+R    + +  V  K EG   H  
Sbjct: 112 RYEVYLAETPMFPESGGQPCDIGQLFVVPSADQAVGVRSWPVVNVVAVMWK-EGALCHLT 170

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-------------- 602
            A +E G  R E+ L    D+Q R      H+  H+       +LG              
Sbjct: 171 DASLEPGT-RVEVRL----DWQRRYDHMQQHTGQHVFSAVADLLLGADTASWELHPLDPE 225

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN------- 655
           +H S +  C+       D+T  + +++ +L  +E   N  +    PV   +++       
Sbjct: 226 THGSGDYGCVA-----VDLTVPQ-LSAEQLLELEARANAELRALRPVTPLVLDPRVAADM 279

Query: 656 ------REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
                 + D    G           +VR+V VE    G+ ++A CGG    STGE+ +L 
Sbjct: 280 ERMEVLQRDPTFRGQLPPADKIKGGKVRLVHVE----GLDANA-CGGE--VSTGEVQVLK 332

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +V     R G  R+  + G RA + L G   +  +L + L          VE +  + R+
Sbjct: 333 VVGAERTR-GHTRVRVMCGGRALAALAGCLTREAALTAKLTCPPWRHADMVELLLRDRRE 391


>gi|157826951|ref|YP_001496015.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|166225492|sp|A8GVV1|SYT_RICB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157802255|gb|ABV78978.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 633

 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  ++++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAIE-NGYYYDFARDKPFTTDDLAVIEAKMHELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N  V   + +RE A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEKVTRELWDREKAVEFFKS--IGEHYKAEIIASIPSNEPISLYRQGNFIDLCRGPHAP 187

Query: 701 STG 703
           STG
Sbjct: 188 STG 190


>gi|306829065|ref|ZP_07462255.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428151|gb|EFM31241.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|46108732|ref|XP_381424.1| hypothetical protein FG01248.1 [Gibberella zeae PH-1]
          Length = 745

 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 9/135 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH--SKPITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G ++        P G  +D+ +   + +T  + K++E   N I+ 
Sbjct: 153 HSSAHILGEAAERRFGCYLCNGPPTEDPPGFYYDMANMGEQSVTEEDKKALEQLSNSIVK 212

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCGGTHVS 700
           Q  P     M +E+ +     +    KY  + RV     S  Y  G +    LC G HV 
Sbjct: 213 QKQPFERLEMTKEELLEMFEYSEY-KKYFIQQRVPDGTKSTVYRCGPLID--LCRGPHVP 269

Query: 701 STGEIMLLYIVSESS 715
           +TG I    ++  S+
Sbjct: 270 TTGNIKAFSVLKNSA 284


>gi|329895719|ref|ZP_08271123.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328922195|gb|EGG29550.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 641

 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 19/190 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           +A   + D   AIG G+       +    G+     +    ++  + SL +  D  +   
Sbjct: 15  DAPPSVYDVALAIGPGL------AKAALAGVVDGKEVDTSFVIENDASLAIITDRDDAGI 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             I HS  HLL  A+  +        G  I  DG  +D       T+ +L+ IE  + +I
Sbjct: 69  EIIRHSTAHLLAMAVQELYPGTQVTIGPTIE-DGFYYDFATGHRFTTEDLEKIEVRMAEI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCG 695
             ++L V    ++RE AI       +G  Y  ++        ++SV Y+ G      LC 
Sbjct: 128 ADRDLTVERLEVSREHAIEEFRN--MGENYKVQIIEDLPAGEIISV-YKQGPWMD--LCR 182

Query: 696 GTHVSSTGEI 705
           G HV STG++
Sbjct: 183 GPHVPSTGKL 192


>gi|239623178|ref|ZP_04666209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522545|gb|EEQ62411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 643

 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H+A+H+L  A+  +        G  I  DG  +D       T  +L+ +E  +  I+
Sbjct: 78  AIRHTASHVLAQAVKRLYPETKLAIGPAID-DGFYYDFDREGGFTPEDLEKLEAEMTKIV 136

Query: 644 AQNLPVVTRIMNREDAI 660
            +NLPV   ++ R++A+
Sbjct: 137 KENLPVKPFVLPRDEAV 153


>gi|28211884|ref|NP_782828.1| threonyl-tRNA synthetase [Clostridium tetani E88]
 gi|73919782|sp|Q891T0|SYT_CLOTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28204327|gb|AAO36765.1| threonyl-tRNA synthetase [Clostridium tetani E88]
          Length = 639

 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 18/193 (9%)

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-----VLTIDYQNRRQLS 584
           + G  + D +      + KKA G  ++  I E   L TE+       +LT D +  R+ +
Sbjct: 15  EKGVKVSDIVMKISPALYKKAVGAKINGEIAE---LMTEIKEDSELEILTFDDEEGRK-T 70

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+++H+L  A+  +        G  I  +G  +D       T   L+ IE  +  I+ 
Sbjct: 71  VRHTSSHILAQAVKRLYPEAKLAIGPAID-NGFYYDFDIDFTFTPEMLEKIEKEMAKIVK 129

Query: 645 QNLPVVTRIMNREDAI-----ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +NL +    + RE+AI     AS    +   +      V+S  Y+ G      LC G H+
Sbjct: 130 ENLEIERFELPREEAIKLVKDASEPYKVELIEDLPEGEVISF-YKQGDF--VDLCAGPHL 186

Query: 700 SSTGEIMLLYIVS 712
            STG+I  + ++S
Sbjct: 187 PSTGKIKAIKLLS 199


>gi|225855059|ref|YP_002736571.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|237649181|ref|ZP_04523433.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822258|ref|ZP_04598103.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|254783541|sp|C1CFK0|SYT_STRZJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225723844|gb|ACO19697.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|221232374|ref|YP_002511527.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783539|sp|B8ZM32|SYT_STRPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220674835|emb|CAR69409.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|322388243|ref|ZP_08061847.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140915|gb|EFX36416.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|148994898|ref|ZP_01823919.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|148997679|ref|ZP_01825243.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149006698|ref|ZP_01830384.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|149021279|ref|ZP_01835525.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168483499|ref|ZP_02708451.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168487280|ref|ZP_02711788.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|168488656|ref|ZP_02712855.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|168491490|ref|ZP_02715633.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|168575182|ref|ZP_02721145.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169834472|ref|YP_001695022.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225859387|ref|YP_002740897.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225861459|ref|YP_002742968.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229236|ref|ZP_06962917.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254509|ref|ZP_06978095.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|307068259|ref|YP_003877225.1| threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|307127841|ref|YP_003879872.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|238688351|sp|B1I703|SYT_STRPI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783538|sp|C1C8M1|SYT_STRP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783543|sp|C1CSP6|SYT_STRZT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147756178|gb|EDK63220.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147761613|gb|EDK68577.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147926966|gb|EDK78011.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|147930380|gb|EDK81364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168996974|gb|ACA37586.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043101|gb|EDT51147.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183569836|gb|EDT90364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183572780|gb|EDT93308.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|183574162|gb|EDT94690.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183578687|gb|EDT99215.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225720074|gb|ACO15928.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225727271|gb|ACO23122.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|306409796|gb|ADM85223.1| Threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|306484903|gb|ADM91772.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|327389816|gb|EGE88161.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332072464|gb|EGI82947.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
 gi|332072798|gb|EGI83279.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332073965|gb|EGI84443.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|194397191|ref|YP_002038247.1| threonyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690846|sp|B5E6Q8|SYT_STRP4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194356858|gb|ACF55306.1| threonyl-tRNA synthetase (thrS) [Streptococcus pneumoniae G54]
          Length = 647

 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|188994826|ref|YP_001929078.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|238691475|sp|B2RJD6|SYT_PORG3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188594506|dbj|BAG33481.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 653

 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT--SAELKSIEDNVNDIIA 644
           HS+ HL+  AL  +        G  I  +G  +DV   + I+   A+L +IE  + D+ A
Sbjct: 73  HSSAHLMAEALEELYPGIKFGIGPAIE-NGFYYDVDPGEGISIKDADLPAIEKRMQDLAA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHS------SALCGGT 697
           +   ++ R + + DA+      + G K +D+ +V  + E  DG + +      + LC G 
Sbjct: 132 RKETIIRRDIAKADALR-----MFGDK-DDQYKVELISELADGTITTYTQGGFTDLCRGP 185

Query: 698 HVSSTGEIMLLYIVS 712
           H+ +TG I  + ++S
Sbjct: 186 HLPNTGYIKAIKLLS 200


>gi|168493529|ref|ZP_02717672.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183576436|gb|EDT96964.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|123435193|ref|XP_001308954.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121890658|gb|EAX96024.1| hypothetical protein TVAG_369340 [Trichomonas vaginalis G3]
          Length = 148

 Score = 42.0 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 20/145 (13%)

Query: 587 HSATHLLHHALSTI------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           H+  H+L+  +  I      +G+H+ +  S       + D   ++ +T  E K IE+ VN
Sbjct: 11  HTTEHILNRTMDNIFKCGRSIGTHLEKKKS-------KCDYPLNRDLTPEEKKLIENTVN 63

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
            ++A+NL V    +   +A      + L     D  +R++ +     G + +  C G HV
Sbjct: 64  GVLAKNLEVKAIFLPPAEAAKLVDISKLPEGATDADIRIIQI-----GDYDNCACIGPHV 118

Query: 700 SSTGEIMLLYIVSESSI-RAGIRRI 723
           + TG+I   + ++ +S+ + GI RI
Sbjct: 119 AKTGDIKGRFKITSTSLEQNGICRI 143


>gi|20808138|ref|NP_623309.1| threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22654110|sp|Q8R9A4|SYT_THETN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|20516726|gb|AAM24913.1| Threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 644

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++H+L  A+  +        G  I  +G  +D    +P T+ + ++IE+ +N II ++
Sbjct: 82  HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTERPFTTEDFEAIEEEMNKIIKED 140

Query: 647 LPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +   ++++E+AI           +              Y+ G      LC G H+ ST
Sbjct: 141 YKLERFVLSKEEAIKFMKEKDEPYKVELIEEIPEGEEISFYKQGEF--VDLCAGPHLPST 198

Query: 703 GEIMLLYIVS 712
           G +  + ++S
Sbjct: 199 GMVKAIKLLS 208


>gi|71655606|ref|XP_816364.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881486|gb|EAN94513.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 817

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L +AL  +  + +S  G  +   G  ++    +P++  + KSIE  + +++   
Sbjct: 136 HSSSHVLGYALERVFHTRLSV-GPALEEGGFFYEGDTGRPLSETDYKSIEIAMQELVKMK 194

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-------GTHV 699
           +P     +++ DA+      LL      + ++++ +  + G  +   CG       G H+
Sbjct: 195 MPYQRLTVSKADAL------LLFGYTEFKSKILASKVPENGFCTVYRCGHLIDPCRGPHL 248

Query: 700 SSTGEIMLLYIVSESS 715
             TG +    +   SS
Sbjct: 249 PDTGRVKAFAVTKNSS 264


>gi|306833981|ref|ZP_07467104.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304423847|gb|EFM26990.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  + +  I+  
Sbjct: 77  IVTPDHEDALGI-LRHSAAHLFAQAAKRLFPDLCLGVGPAIE-DGFYYDTDNKAGQISDE 134

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGG 687
           +L  IE+ +  I+ +N P +     R++     A  L     ND  ++  +E    ++GG
Sbjct: 135 DLPRIEEEMKKIVKENFPCI-----RKEITIDEARELFK---NDPYKLELIEEHGADEGG 186

Query: 688 --VHS----SALCGGTHVSSTGEIMLLYIVS 712
             V+S    + LC G HV STG I + ++++
Sbjct: 187 LTVYSQGEFTDLCRGPHVPSTGRIQVFHLLN 217


>gi|190409032|gb|EDV12297.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|256273271|gb|EEU08212.1| YNL040W-like protein [Saccharomyces cerevisiae JAY291]
 gi|259149320|emb|CAY82562.1| EC1118_1N9_3334p [Saccharomyces cerevisiae EC1118]
          Length = 456

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 123/290 (42%), Gaps = 36/290 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           E+    T  + E GGQ  D+G   I +G R        K E I V H  V R  L  +  
Sbjct: 46  EIELQDTILFPEGGGQPSDSGFLKIVEGNR-----NSSKIEKILVSH--VSRFGLHAKHH 98

Query: 569 --------MSLVLTIDYQNRRQLSINHSATHLL------HHALSTI---LGSHVSQNGSC 611
                    ++ + +D Q R      H+  HLL      ++ + T+   +G  +++    
Sbjct: 99  VNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPV 158

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLG 669
           + P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + + 
Sbjct: 159 LEPSDYFNYIELNRKLTLDEITNVSDEINQLII-NFPQEIIVEERIGEETVDEVSTSKIP 217

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITG 728
             Y D  + V      G + S+  C GTH+  T +I   L + ++S++R    R+  + G
Sbjct: 218 DDY-DLSKGVLRTIHIGDIDSNPCC-GTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMCG 275

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +R   +    ++ L    + L  S+  +    E+I  + +++Q ++ + +
Sbjct: 276 KRVSLYAKSVNKILLDSKNLLSCSETQI---SEKITRQTKQIQQLNKREQ 322


>gi|148988673|ref|ZP_01820106.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147925874|gb|EDK76949.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 600

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|34540737|ref|NP_905216.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|73919814|sp|Q7MVQ5|SYT_PORGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34397051|gb|AAQ66115.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT--SAELKSIEDNVNDIIA 644
           HS+ HL+  AL  +        G  I  +G  +DV   + I+   A+L +IE  + D+ A
Sbjct: 73  HSSAHLMAEALEELYPGIKFGIGPAIE-NGFYYDVDPGEGISIKDADLPAIEKRMQDLAA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHS------SALCGGT 697
           +   ++ R + + DA+      + G K +D+ +V  + E  DG + +      + LC G 
Sbjct: 132 RKETIIRRDIAKADALR-----MFGDK-DDQYKVELISELADGTITTYTQGGFTDLCRGP 185

Query: 698 HVSSTGEIMLLYIVS 712
           H+ +TG I  + ++S
Sbjct: 186 HLPNTGYIKAIKLLS 200


>gi|319938817|ref|ZP_08013181.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811867|gb|EFW08133.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 650

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  ++   I++ 
Sbjct: 59  IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGFYYDTDNTAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGG 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMKKIVKENFPSI-----REEVTKDQAREIFK---NDPYKLELIEEHSEDEGG 168

Query: 688 V------HSSALCGGTHVSSTGEIMLLYIVS 712
           +          LC G HV STG I + ++++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|152996610|ref|YP_001341445.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083612|sp|A6VYI1|SYT_MARMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150837534|gb|ABR71510.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  + +++ 
Sbjct: 71  IRHSFAHLVGHAVKQLYPTAQMAIGPVID-EGFYYDIAYERPFTPDDLAAIEKRIAELVK 129

Query: 645 QNLPVVTRIMN----REDAIASGAA--ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  VV R+      R+  +  G +    L    ++  + V + Y +       +C G H
Sbjct: 130 TDYDVVKRMTPIAEARQQFVDRGESYKVALIDDMDESTKEVGLYYHE---EYMDMCRGPH 186

Query: 699 VSST 702
           V +T
Sbjct: 187 VPNT 190


>gi|148984063|ref|ZP_01817358.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923352|gb|EDK74465.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800452|emb|CBW33086.1| threonyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|88195489|ref|YP_500293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|123003455|sp|Q2FXP7|SYT_STAA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87203047|gb|ABD30857.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329728437|gb|EGG64874.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G+     G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N+ +  ++++R++            +Y   +     E E+  ++S    + LC G HV 
Sbjct: 132 ENMKIERKVVSRDEV----KELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVS 712
           ST +I    ++S
Sbjct: 188 STAKIKEFKLLS 199


>gi|225857248|ref|YP_002738759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254783542|sp|C1CLX1|SYT_STRZP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225725171|gb|ACO21023.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|307709563|ref|ZP_07646017.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619694|gb|EFN98816.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 20/160 (12%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R I +     ++T D+++   + + HSA HL   A   +        G  I  DG  +D 
Sbjct: 49  RAITKDGSIEIVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDT 106

Query: 622 THSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  
Sbjct: 107 DNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPYKLEL 158

Query: 681 VEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           +E    ++GG+          LC G HV STG I + +++
Sbjct: 159 IEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|307707001|ref|ZP_07643798.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617527|gb|EFN96697.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|182684576|ref|YP_001836323.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182629910|gb|ACB90858.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 660

 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 63  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 115

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 116 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 167

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 168 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 211


>gi|315612715|ref|ZP_07887626.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314825|gb|EFU62866.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  ++   I++ 
Sbjct: 59  IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNTAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGG 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGG 168

Query: 688 V------HSSALCGGTHVSSTGEIMLLYIV 711
           +          LC G HV STG I + +++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|288928013|ref|ZP_06421860.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330847|gb|EFC69431.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 654

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVNDIIA 644
           HS+ HLL  AL  +        G  +  +G  +DV      PI+  +   IE+ + +   
Sbjct: 73  HSSAHLLAEALQALYPGIQFGFGPAVE-NGFFYDVMTKDGTPISENDFPKIEEKMREFAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTH 698
           ++  +V R +++ DA+        G +Y  +   + ++ EDG + + +      LC G H
Sbjct: 132 RDEAIVRREVSKSDALKEFKED--GQEY--KCEHIDLDLEDGTISTYSQGAFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + + S
Sbjct: 188 LMSTGPIKAIKLTS 201


>gi|15901467|ref|NP_346071.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657539|ref|ZP_01408280.1| hypothetical protein SpneT_02001261 [Streptococcus pneumoniae
           TIGR4]
 gi|149011514|ref|ZP_01832761.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303253984|ref|ZP_07340104.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303258557|ref|ZP_07344537.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262647|ref|ZP_07348587.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263586|ref|ZP_07349508.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266970|ref|ZP_07352845.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303269866|ref|ZP_07355610.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|22654131|sp|Q97PI4|SYT_STRPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14973120|gb|AAK75711.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147764504|gb|EDK71435.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301802334|emb|CBW35088.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302599072|gb|EFL66098.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636203|gb|EFL66698.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302640058|gb|EFL70513.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302640601|gb|EFL71004.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643487|gb|EFL73759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646624|gb|EFL76849.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|288905772|ref|YP_003430994.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325978807|ref|YP_004288523.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732498|emb|CBI14070.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325178735|emb|CBZ48779.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  + +  I+  
Sbjct: 59  IVTPDHEDALGI-LRHSAAHLFAQAAKRLFPDLCLGVGPAIE-DGFYYDTDNKAGQISDE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGG 687
           +L  IE+ +  I+ +N P +     R++     A  L     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMKKIVKENFPCI-----RKEITIDEARELFK---NDPYKLELIEEHGADEGG 168

Query: 688 --VHS----SALCGGTHVSSTGEIMLLYIVS 712
             V+S    + LC G HV STG I + ++++
Sbjct: 169 LTVYSQGEFTDLCRGPHVPSTGRIQVFHLLN 199


>gi|144899402|emb|CAM76266.1| Threonyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 638

 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D     P    +L+ IE  + +I+ 
Sbjct: 72  LRHDAAHVMAEAVKELYPETQVTIGPSIE-NGFYYDFARPTPFGPEDLEKIEARMREIVD 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  +     NR+DA+A      LG KY   +       +  G++       LC G H+ 
Sbjct: 131 RDEAITREEWNRDDAVAFFEG--LGEKYKAEIIASIPADQPIGLYRQGNFIDLCRGPHLP 188

Query: 701 STGEI 705
           ST ++
Sbjct: 189 STAKL 193


>gi|306831875|ref|ZP_07465030.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425801|gb|EFM28918.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  + +  I+  
Sbjct: 59  IVTPDHEDALGI-LRHSAAHLFAQAAKRLFPDLCLGVGPAIE-DGFYYDTDNKAGQISDE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGG 687
           +L  IE+ +  I+ +N P +     R++     A  L     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMKKIVKENFPCI-----RKEITIDEARELFK---NDPYKLELIEEHGADEGG 168

Query: 688 --VHS----SALCGGTHVSSTGEIMLLYIVS 712
             V+S    + LC G HV STG I + ++++
Sbjct: 169 LTVYSQGEFTDLCRGPHVPSTGRIQVFHLLN 199


>gi|2065021|emb|CAA73145.1| alanyl t-RNA synthetase [Arabidopsis thaliana]
          Length = 251

 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A
Sbjct: 9   SSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 50


>gi|78486008|ref|YP_391933.1| threonyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123769059|sp|Q31F14|SYT_THICR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78364294|gb|ABB42259.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Thiomicrospira
           crunogena XCL-2]
          Length = 642

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HAL  +  +     G  +  +G  +D+   + IT  +LK IE  + ++  
Sbjct: 71  MRHSCAHLLGHALKQLYPAAKMAIGPVVE-NGFYYDIDMEEKITPEDLKQIEKRMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSS 701
               V+  +  R +A+A+        K  + +  +  E E G  H      +C G HV +
Sbjct: 130 TKYEVIKEMTPRAEALATFKERQEDYKV-ELIEDMPDETEFGLYHHQEYIDMCRGPHVPN 188

Query: 702 TGEI 705
            G I
Sbjct: 189 MGFI 192


>gi|125973743|ref|YP_001037653.1| threonyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256005747|ref|ZP_05430701.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281417900|ref|ZP_06248920.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166223337|sp|A3DET1|SYT_CLOTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125713968|gb|ABN52460.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|255990281|gb|EEU00409.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409302|gb|EFB39560.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316940063|gb|ADU74097.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 635

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  R  +  H+ +H+L  A+  +        G  I  +G  +D    KP +  +
Sbjct: 59  LLTFDDEGGRD-AYRHTTSHILAQAVKRLYPDAKLAIGPAIE-NGFYYDFDVEKPFSVED 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE+ +  II ++  +    + RE+AI          + N+  +V  +          
Sbjct: 117 LEKIEEEMKKIIKEDYKLERFTLPREEAIK------FMEERNEPYKVELIRDLPEGETIS 170

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G      LC G H+ STG++    ++S
Sbjct: 171 FYKQGDF--VDLCAGPHIESTGKVKAFKLMS 199


>gi|322374759|ref|ZP_08049273.1| threonine--tRNA ligase [Streptococcus sp. C300]
 gi|321280259|gb|EFX57298.1| threonine--tRNA ligase [Streptococcus sp. C300]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|296876104|ref|ZP_06900158.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432815|gb|EFH18608.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D    +  I++ 
Sbjct: 59  IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNQAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGG 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMKKIVKENFPSI-----REEVTKDQAREIFK---NDPYKLELIEEHSEDEGG 168

Query: 688 V------HSSALCGGTHVSSTGEIMLLYIVS 712
           +          LC G HV STG I + ++++
Sbjct: 169 LTIYRQGEYIDLCRGPHVPSTGRIQIFHLLN 199


>gi|262282640|ref|ZP_06060408.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261931|gb|EEY80629.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|151944492|gb|EDN62770.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 456

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 123/290 (42%), Gaps = 36/290 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           E+    T  + E GGQ  D+G   I +G R        K E I V H  V R  L  +  
Sbjct: 46  EIELQDTILFPEGGGQPSDSGFLKIVEGNR-----NSSKIEKILVSH--VSRFGLHAKHH 98

Query: 569 --------MSLVLTIDYQNRRQLSINHSATHLL------HHALSTI---LGSHVSQNGSC 611
                    ++ + +D Q R      H+  HLL      ++ + T+   +G  +++    
Sbjct: 99  VNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPV 158

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLG 669
           + P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + + 
Sbjct: 159 LEPSDYFNYIELNRKLTLDEITNVSDEINQLII-NFPQEIIVEERIGEETVDEVSTSKIP 217

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITG 728
             Y D  + V      G + S+  C GTH+  T +I   L + ++S++R    R+  + G
Sbjct: 218 DDY-DLSKGVLRTIHIGDIDSNPCC-GTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMCG 275

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +R   +    ++ L    + L  S+  +    E+I  + +++Q ++ + +
Sbjct: 276 KRVSLYAKSVNKILLDSKNLLSCSETQI---SEKITRQTKQIQQLNKREQ 322


>gi|317969695|ref|ZP_07971085.1| threonyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 590

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I HS +H++  A+  +        G   T +G  +D  +  P T A+LK+I+  +  +
Sbjct: 13  LRIRHSMSHVMAMAVQRLFPKAQVTIGPW-TENGFYYDFDNPDPFTEADLKAIKKEMIKL 71

Query: 643 IAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           I + LP+    ++R +A +   A         L G +    +  +  ++ D       LC
Sbjct: 72  INKKLPLERLEVSRAEAESRIQAQNEPYKLEILAGIQEPISLYTLGEDWWD-------LC 124

Query: 695 GGTHVSSTGEI 705
            G HVS+T E+
Sbjct: 125 AGPHVSNTKEL 135


>gi|269986162|gb|EEZ92475.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 215

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 647 LPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +   I+ RE A +    ++   G   N  +R+V ++  D        CGG H +STGE
Sbjct: 1   MKINASIVPREKAESKYGMSIYQGGVVPNANIRIVKIDDYD-----VEACGGLHCNSTGE 55

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ I+    I+ G+ RI     + A  ++   D+  K L +   VSQ ++    +  +
Sbjct: 56  VGLIKIIKTERIQDGVVRIVFKAYKPALEYIENLDKLAKDLTALWGVSQEDIYATAKRFF 115

Query: 765 EEYR 768
            E +
Sbjct: 116 SEAK 119


>gi|290580052|ref|YP_003484444.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996951|dbj|BAH87552.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 649

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D    +  I++ 
Sbjct: 59  IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGFYYDTDNEAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEYEDGG- 687
           +L  IE+ +  I+ +N P V     RE+     A  +     ND  ++ ++    ED G 
Sbjct: 117 DLPRIEEEMKKIVKENFPSV-----REEVTKDEAREIFK---NDPYKLELIEEHSEDAGG 168

Query: 688 --VHSSA----LCGGTHVSSTGEIMLLYIVS 712
             ++       LC G HV STG I + ++++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQVFHLLN 199


>gi|254477067|ref|ZP_05090453.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214031310|gb|EEB72145.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 31/181 (17%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + DII 
Sbjct: 74  IRHDLAHIMARAVQEIWPDTKVTIGPVID-NGWYYDFDRAEPFTPEDLGAIEKKMKDIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALC 694
           +   V T +  R+ AI         T  N+  +V  +E          Y  G      LC
Sbjct: 133 KRDEVRTEVWERDRAIQH------YTDNNEPYKVELIESIPGDEPLRMYWHGDWQD--LC 184

Query: 695 GGTHVSSTGEI-----MLLYIVSE----SSIRAGIRRIE--AITG-QRARSHLMGQDEKL 742
            G H+  TG++      L+ I        S RA ++RI   A TG ++ ++HL   +E  
Sbjct: 185 RGPHLQHTGQVPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLTMLEEAA 244

Query: 743 K 743
           K
Sbjct: 245 K 245


>gi|195163547|ref|XP_002022611.1| GL13126 [Drosophila persimilis]
 gi|194104603|gb|EDW26646.1| GL13126 [Drosophila persimilis]
          Length = 434

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 35/259 (13%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EA   +   VV + T  + E GGQ  D G   G  +R  +       +G    H +    
Sbjct: 38  EARPVRGFNVVCEDTILFPEGGGQPCDYGTINGQPVRRVLR------KGNIAVHFVESSS 91

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITP 614
                  +  ++D+  R      HS  HL+         +   S  LGS+VS        
Sbjct: 92  SFEEGAEVHQSLDWDRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSNVSH------- 144

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYN 673
             ++ +  H   I+   L  IE   N++I +  PV   +++ E D     A A  G   +
Sbjct: 145 --IQLNTPHL--ISRESLDLIERQANELIREGRPVSVVLVDPEVDEEFKDARAPRGLPKD 200

Query: 674 DR--VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                RVV +E    G+ S+ +C GTHV+   ++  + ++    ++  I  +  + G+R 
Sbjct: 201 HEGLARVVRIE----GIESN-MCCGTHVTDLSQLQCIKLLYAEKVKTNI-LVHFVVGERV 254

Query: 732 RSHLMGQDEKLKSLASFLK 750
              L    ++ + L + LK
Sbjct: 255 LRKLGEVFQREQQLTTALK 273


>gi|331001642|ref|ZP_08325165.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330413363|gb|EGG92730.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 34/266 (12%)

Query: 575 IDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           I  +++  LS I HSA+H+L  A+  +        G  I  +G  +D  H +P +  +L 
Sbjct: 59  ITIKDKEALSVIRHSASHVLAEAVKRVFPEAKLAIGPSIA-EGFYYDFDH-EPFSREDLD 116

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV----- 688
            +E  +  II +   +    + RE+AI        G  Y  +V ++    ED  +     
Sbjct: 117 KLEAEMKKIIKEGAHIEKFELPREEAIKFMKEK--GEPY--KVELIQDLPEDEKISFYKQ 172

Query: 689 -HSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDE 740
              + LC G H+  T +I    ++S S       S +A ++RI   T   ++  L     
Sbjct: 173 GDFTDLCAGPHLQRTKDIKAFKLISSSMAYWRGDSNKAKLQRIYG-TAYNSKEELEAH-- 229

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAK-----RKLQLNVEDLSCHKI 791
            LK L   +K+   N +GR  E++       + L L+  K     +KLQ  +EDL  ++ 
Sbjct: 230 -LKHLED-IKLRDHNKLGREMELFTTVDVIGQGLPLMLPKGTKMIQKLQRWIEDLEDNEW 287

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQ 817
             V   + ++++ D  ++    D  Q
Sbjct: 288 GYVRTKTPLMAKSDLYKISGHWDHYQ 313


>gi|322517198|ref|ZP_08070081.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124257|gb|EFX95773.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQVFHLLN 199


>gi|259483106|tpe|CBF78206.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_8G07110) [Aspergillus nidulans FGSC A4]
          Length = 283

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 94/224 (41%), Gaps = 34/224 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V   QT FY + GGQ  DTG  AI  DG  L          G F    ++++        
Sbjct: 72  VTTQQTVFYPQGGGQPSDTGIIAISFDGKILHF--------GRFAKVPLIKQPYFTAHQP 123

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHA---LSTILGSH--VSQNG----SCITPDGLRFDV 621
           + L ID   R   S  H+A H+L  A   LST LG    V  N     +C+  +GL ++ 
Sbjct: 124 VTLHIDAAKRNYHSRLHTAGHVLGLAMRLLSTTLGERKKVKANHFPREACLEFEGLLYN- 182

Query: 622 THSKPITSAELKSIEDNVND--IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
              KP+  A++  I D   D  I   +   V R  +  D +       +G     RVRV 
Sbjct: 183 -EHKPLIQAKVDEITDMDLDVRISWWSEEEVERRRDELDMVEGREVGGMG-----RVRVA 236

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     G   +  CGGTHV ST     + ++ + S + GI R+
Sbjct: 237 EI-----GDLDANPCGGTHVVSTKRTGRI-VIRKISRQKGISRV 274


>gi|298503373|ref|YP_003725313.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238968|gb|ADI70099.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
          Length = 660

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 63  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 115

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 116 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 167

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 168 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 211


>gi|24379968|ref|NP_721923.1| threonyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|73919830|sp|Q8DT12|SYT_STRMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24377953|gb|AAN59229.1|AE014990_3 putative threonyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 649

 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 23/197 (11%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLVLTIDYQNRRQLSI 585
           ++G T   I + I   +   +K   G F    I   R I +     ++T D+++   + +
Sbjct: 15  EIGTTTSEIAESISKSL--AKKALAGKFNGQLIDTTRAITQDGSIEIVTPDHEDALDI-L 71

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIA 644
            HSA HL   A   +        G  I  DG  +D    +  I++ +L  IE+ +  I+ 
Sbjct: 72  RHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGFYYDTDNEAGQISNEDLPRIEEEMKKIVK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEYEDGG---VHSSA----LCG 695
           +N P V     RE+     A  +     ND  ++ ++    ED G   ++       LC 
Sbjct: 131 ENFPSV-----REEVTKDEAREIFK---NDPYKLELIEEHSEDAGGLTIYRQGEYVDLCR 182

Query: 696 GTHVSSTGEIMLLYIVS 712
           G HV STG I + ++++
Sbjct: 183 GPHVPSTGRIQVFHLLN 199


>gi|319790149|ref|YP_004151782.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114651|gb|ADU97141.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 658

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNG 609
           E I VH  I E G +R        I  ++   L I  HSA HLL  A+  + G++  + G
Sbjct: 43  ELIDVHTPITESGRIRI-------ITPKDPESLEILRHSAAHLLAKAVKKLYGNNEVKLG 95

Query: 610 -SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
               T +G  +D      I+  +L  IE  +  I+    P    +++RE A         
Sbjct: 96  IGPATQEGFYYDFDLPVSISEEDLPKIEAEMEKIVKAKEPFRREVISREKA----RELFK 151

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHVSSTGEIMLLYIVS 712
              Y  ++     E E+  ++        LC G HV   G+I    ++S
Sbjct: 152 NDPYKLKLLESIPEEEEVSIYWLGEDFFDLCKGPHVEHAGQIKAFKLLS 200


>gi|315222497|ref|ZP_07864386.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188183|gb|EFU21909.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 650

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  ++   I++ 
Sbjct: 59  IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGFYYDTDNAAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGG 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMKKIVKENFPSI-----REEVTKDQAREIFK---NDPYKLELIEEHSEDEGG 168

Query: 688 V------HSSALCGGTHVSSTGEIMLLYIVS 712
           +          LC G HV STG I + ++++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|298204586|emb|CBI23861.3| unnamed protein product [Vitis vinifera]
          Length = 83

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 294 NEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           NEGR YVLR I+RRA+ Y + +L   E     LL  +   MG  +PEL Q ++ I
Sbjct: 27  NEGREYVLRHILRRAVRYGSEVLKAQEGFFNSLLNIVVKVMGDVFPELKQYEVHI 81


>gi|239637520|ref|ZP_04678492.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596738|gb|EEQ79263.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVIE-GGFYYDFDTDEKISSDDFEKIEKTMKKIVD 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N  +  +++ R++A     A      Y  ++ ++    ED  V        + LC G H
Sbjct: 132 ENHKIERKVVTRDEA----KAFFKDDPY--KLELIDAIPEDENVTLYSQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTSKIKEFKLLS 199


>gi|78778982|ref|YP_397094.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
 gi|123755107|sp|Q31BT7|SYT_PROM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78712481|gb|ABB49658.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 638

 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  I  S +      +  DG  +D+   +  T  +L  IE+ +N +I 
Sbjct: 71  IRHSFAHLIGHAVKQIY-SDIKMAIGPVIEDGFYYDIFSEQRFTPEDLIKIENRINKLIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSA------LCG 695
            N  V    +++E+AI +        K  D   ++R++    E+G ++         +C 
Sbjct: 130 TNYDVEILQVSKEEAIKT-------FKERDETFKLRIIEEIPEEGLINLYKHEEYIDMCR 182

Query: 696 GTHVSST 702
           G HV +T
Sbjct: 183 GPHVPNT 189


>gi|319946565|ref|ZP_08020800.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319747311|gb|EFV99569.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|307705352|ref|ZP_07642214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621139|gb|EFO00214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  ++   I++ 
Sbjct: 59  IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNTAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGG 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGG 168

Query: 688 V------HSSALCGGTHVSSTGEIMLLYIV 711
           +          LC G HV STG I + +++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|270293200|ref|ZP_06199411.1| threonine--tRNA ligase [Streptococcus sp. M143]
 gi|270279179|gb|EFA25025.1| threonine--tRNA ligase [Streptococcus sp. M143]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|229825871|ref|ZP_04451940.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
 gi|229789891|gb|EEP26005.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
          Length = 604

 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H+L  A+  I G  V         DG  +D    + +T  + K IED + +I+ + 
Sbjct: 12  HSLAHVLAKAVFEIFGESVQIAIGPQIDDGFYYDFVLPRAVTEDDYKVIEDKMREILKRK 71

Query: 647 LPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                + + +E+A+          +  ND      +   + G     LC G H+ ++ E+
Sbjct: 72  ENWTRKELTKEEALEKFKDQKFKVEIINDLPEDAIISTYNTGDDFCDLCRGPHIENSAEL 131

Query: 706 M 706
           +
Sbjct: 132 L 132


>gi|322385772|ref|ZP_08059416.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270510|gb|EFX53426.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 649

 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNQAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYCQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|26987847|ref|NP_743272.1| synthetase, putative [Pseudomonas putida KT2440]
 gi|24982548|gb|AAN66736.1|AE016301_7 synthetase, putative [Pseudomonas putida KT2440]
          Length = 262

 Score = 42.0 bits (97), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKP 626
           M   +TID + R +L+++HSA+H L +A +  L   + Q   G  I  D  RFD      
Sbjct: 111 MPARVTIDIERRERLTLSHSASHFL-YAAAIGLREELKQWTIGCHIKEDTARFDFLVEDA 169

Query: 627 ITSAELKSIEDNVNDIIAQNLPV 649
            T+ ++  IE   N++I  + P+
Sbjct: 170 FTAEDVLEIERRANELIGCDAPI 192


>gi|57239615|ref|YP_180751.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579605|ref|YP_197817.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|73919788|sp|Q5H9Z4|SYT_EHRRW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57161694|emb|CAH58624.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418231|emb|CAI27435.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +     +  G  I  DG  +D +     +S EL+ IE+ + +II 
Sbjct: 71  IRHDTAHIMAQAIKEMFPEVKTVVGPTIK-DGFYYDFSTDHIFSSNELEKIEEKMREIIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N   +  +  RE+AI   +    G  Y  ++      +E+  V+       LC G H  
Sbjct: 130 KNESFIREVWTREEAIRFFSNK--GEDYKVKIIAKIPIHENITVYKQGSFIDLCRGPHAP 187

Query: 701 ST 702
           ST
Sbjct: 188 ST 189


>gi|327470637|gb|EGF16093.1| threonine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGAIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  +    I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEVGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|328866339|gb|EGG14724.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 706

 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPITSAELKSIEDNVNDI 642
           HS+ H+L  AL  + G  +     CI P   DG  +D+ T  K ++S + + I++ VN I
Sbjct: 146 HSSAHVLGQALELVYGGQL-----CIGPATQDGFYYDMATGDKLVSSEDYEIIQEVVNKI 200

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVS-VEYEDG-GVHSSA----LCG 695
           +A+  P     + R+        AL   KYN  +  ++S +  ED   ++       LC 
Sbjct: 201 VAEKQPFERLAVPRD-------LALEMFKYNKYKTEIISKIPAEDTVSLYRCGTLVDLCR 253

Query: 696 GTHVSSTGEIMLLYIVSESS 715
           G H+ +T  I    +V  SS
Sbjct: 254 GPHLPNTSYIKAFKVVKNSS 273


>gi|58617659|ref|YP_196858.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|73919787|sp|Q5FGP1|SYT_EHRRG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58417271|emb|CAI28384.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +     +  G  I  DG  +D +     +S EL+ IE+ + +II 
Sbjct: 71  IRHDTAHIMAQAIKEMFPEVKTVVGPTIK-DGFYYDFSTDHIFSSNELEKIEEKMREIIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N   +  +  RE+AI   +    G  Y  ++      +E+  V+       LC G H  
Sbjct: 130 KNESFIREVWTREEAIRFFSNK--GEDYKVKIIAKIPIHENITVYKQGSFIDLCRGPHAP 187

Query: 701 ST 702
           ST
Sbjct: 188 ST 189


>gi|148546393|ref|YP_001266495.1| synthetase, putative [Pseudomonas putida F1]
 gi|148510451|gb|ABQ77311.1| metal-dependent hydrolase [Pseudomonas putida F1]
          Length = 262

 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKP 626
           M   +TID + R +L+++HSA+H L +A +  L   + Q   G  I  D  RFD      
Sbjct: 111 MPARVTIDIERRERLTLSHSASHFL-YAAAIGLREELKQWTIGCHIKEDTARFDFLVEDA 169

Query: 627 ITSAELKSIEDNVNDIIAQNLPV 649
            T+ ++  IE   N++I  + P+
Sbjct: 170 FTAEDVLEIERRANELIGCDAPI 192


>gi|313497476|gb|ADR58842.1| Synthetase, putative [Pseudomonas putida BIRD-1]
          Length = 262

 Score = 42.0 bits (97), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKP 626
           M   +TID + R +L+++HSA+H L +A +  L   + Q   G  I  D  RFD      
Sbjct: 111 MPARVTIDIERRERLTLSHSASHFL-YAAAIGLREELKQWTIGCHIKEDTARFDFLVEDA 169

Query: 627 ITSAELKSIEDNVNDIIAQNLPV 649
            T+ ++  IE   N++I  + P+
Sbjct: 170 FTAEDVLEIERRANELIGCDAPI 192


>gi|257463827|ref|ZP_05628214.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317061364|ref|ZP_07925849.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313687040|gb|EFS23875.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 7/132 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D    +  T  +L  IE+ +  +  
Sbjct: 70  IRHSAAHLMAQAVIRLFPGTKVTIGPSIE-NGFYYDFDPKEQFTEEDLLKIEEEMKRLSK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +++ V   +M+RE+AI       LG  Y   +     + E    +       LC G HV 
Sbjct: 129 EDIKVERFMMSREEAIEYFEK--LGEHYKVEIIKDIAKGEQLSFYRQGEFVDLCRGPHVP 186

Query: 701 STGEIMLLYIVS 712
           STG I  + + S
Sbjct: 187 STGHIKAIKLKS 198


>gi|322819645|gb|EFZ26679.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L +AL  +  + +S  G  +   G  ++    +P++  + KSIE  + +++   
Sbjct: 135 HSSSHVLGYALERVFHTRLSV-GPALEEGGFFYEGDTGRPLSETDYKSIEIAMQELVKMK 193

Query: 647 LPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGV------HSSALCGGTHV 699
           +P     +++ DA+      L G T++  ++    V  E+G        H    C G H+
Sbjct: 194 MPYQRLTVSKADAL-----RLFGYTEFKSKILASKVP-ENGFCTVYRCGHLIDPCRGPHL 247

Query: 700 SSTGEIMLLYIVSESS 715
             TG +    +   SS
Sbjct: 248 PDTGRVKAFAVTKNSS 263


>gi|322392280|ref|ZP_08065741.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144815|gb|EFX40215.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D  +    I++ 
Sbjct: 59  IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNPAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEYEDGG- 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++ ++    ED G 
Sbjct: 117 DLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDAGG 168

Query: 688 --VHSSA----LCGGTHVSSTGEIMLLYIVS 712
             ++       LC G HV STG I + ++++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQVFHLLN 199


>gi|326480566|gb|EGE04576.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 278

 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 85/211 (40%), Gaps = 34/211 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA--EGIFVHHAIVERGILRTEM 569
           VV ++T F+ + GGQ  D G      G    +  V+  A  +G  +H             
Sbjct: 48  VVTEKTIFHPQGGGQPSDIGMITSSTGSSFTVASVRMDALQDGQVLHLGRFGSSTFAPGE 107

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----------GSHVSQNGSCITPDGLR 618
           ++   ID + R   S  H+A H+L  A+  ++            SH   + +C    GL 
Sbjct: 108 TVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFEELKASHFPDSAACEF-RGL- 165

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYND 674
                   I      SI+D VN+ IA+ +PV     + +D  + G   L+         +
Sbjct: 166 --------IEGKWKPSIQDKVNEFIAEAMPVEIEWWDEDDFRSRGLERLIPDPTLVPPGE 217

Query: 675 RVRVVSV----EYEDGGVH--SSALCGGTHV 699
           + RVV++     Y  GG H  ++ LCG T V
Sbjct: 218 KSRVVNIVGAEVYPCGGTHVDTTDLCGQTTV 248


>gi|2281029|dbj|BAA21554.1| alanyl t-RNA synthetase [Escherichia coli]
          Length = 78

 Score = 42.0 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S II+L  +  E K S++  V++D+ DR  A +L  + A+ +GG GGG RP MAQ+GG +
Sbjct: 1   STIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGG-RPDMAQAGGTD 58


>gi|116670864|ref|YP_831797.1| threonyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|166223319|sp|A0JXC7|SYT_ARTS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116610973|gb|ABK03697.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Arthrobacter
           sp. FB24]
          Length = 669

 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 21/151 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  IT DG  FD   ++P T  +LK++E  +  II 
Sbjct: 70  LRHSTAHVMAQAVQQLRPDAKLGIGPYIT-DGFYFDFDVAEPFTPEDLKALEKMMLKIIN 128

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN--DRVRVVSVEYEDGGVH-------- 689
           QN   V R+++ ++A  +         LLG K N  D    V+VE   G +         
Sbjct: 129 QNQKFVRRVVSEDEAREAMKNEPYKLELLGKKNNAADAGEGVNVEVGAGDITIYDNVDRK 188

Query: 690 -----SSALCGGTHVSSTGEIMLLYIVSESS 715
                   LC G H+ +T  I   + ++ SS
Sbjct: 189 SGDSVWCDLCRGPHLPNTKLISNAFALTRSS 219


>gi|224438525|ref|ZP_03659445.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144952|ref|ZP_07807145.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129983|gb|EFR47600.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 603

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 14/124 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  +  +G  +D      I+  +L SIE  + +I  
Sbjct: 41  IRHSCAHLMAQAIKSLYPEAKFFVGPVVN-EGFYYDFKVDSKISEEDLPSIESKMLEIAK 99

Query: 645 QNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTH 698
           +  P+V   + R+DA A  A      A++    +D++ V +  ++ED       LC G H
Sbjct: 100 KAYPIVKSTLLRKDAEAKFANDELKQAVMSKIPDDKLSVYTQGDFED-------LCRGPH 152

Query: 699 VSST 702
           + +T
Sbjct: 153 LPNT 156


>gi|153855829|ref|ZP_01996815.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
 gi|149751870|gb|EDM61801.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I +G+    T  +   E + + H + E   L      +LT D +  +  +  H+ +H++ 
Sbjct: 29  ISEGLARVATSARVNGEVVDLRHVVSEDCELE-----ILTFDNEEGKG-AFWHTTSHIMA 82

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A+  +        G  I  +G  +DV    P  + +L+ IE  +  I+ + LP+     
Sbjct: 83  QAIKRLYPDTKLAIGPSIE-NGFYYDVDRETPFVAEDLEKIEKEMKKIVKEALPIERFTK 141

Query: 655 NREDAIA 661
            RE+AIA
Sbjct: 142 TREEAIA 148


>gi|86749289|ref|YP_485785.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|86572317|gb|ABD06874.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris HaA2]
          Length = 661

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  +IE  + +II 
Sbjct: 75  IRHDCAHVLAEAVQSLWPGTQVTIGPTIE-NGFYYDFFRNEPFTPEDFGAIEKKMREIIQ 133

Query: 645 QNLPVVTRIMNREDA--IASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           ++ P    I +R++   + +    +   +  D +   + + + Y+ G      LC G H+
Sbjct: 134 RDKPFTKEIWSRDETKKVFADNGEMFKVELVDAIPADQTIKI-YKQGDWFD--LCRGPHM 190

Query: 700 SSTGEI 705
           +STG+I
Sbjct: 191 TSTGKI 196


>gi|328468850|gb|EGF39810.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 29/194 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV    T FYAE+GGQ  D G    DGIR+    V     G  + + +  +   R    +
Sbjct: 26  EVELSHTIFYAESGGQESDAGTI--DGIRV----VGAIKSGSRIVYTLERQPTFRVGDQV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID+Q R  L   H A  ++   L T   +++ + G+ I+ D  R D    + IT   
Sbjct: 80  ITQIDWQRRYVLMKLHFAAEVILE-LFTQKFANIQKVGAHISADKSRIDFEWPESIT--- 135

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
                           P++     +  A+    A  + + ++D  +       +G   + 
Sbjct: 136 ----------------PLLAEFQQQAQAVIDSDAE-IESAFSDEGQERRYWKVEG--FAQ 176

Query: 692 ALCGGTHVSSTGEI 705
             CGGTH+  T E+
Sbjct: 177 VPCGGTHLKRTSEV 190


>gi|299747575|ref|XP_001837131.2| alanyl-tRNA synthetase domain-containing protein [Coprinopsis
           cinerea okayama7#130]
 gi|298407581|gb|EAU84748.2| alanyl-tRNA synthetase domain-containing protein [Coprinopsis
           cinerea okayama7#130]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 155/388 (39%), Gaps = 81/388 (20%)

Query: 477 CQKPPIDLTNGVSSIVKAIV-------------QQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           CQ+ P+  T  V+S+V+A +             ++  I      G  +E+V   T  + E
Sbjct: 41  CQRDPLQRTL-VTSVVQATLSNSTSGKDKNKTGKKAVIAPALPPGPILELVLHDTVIFPE 99

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIF-VHHAIVE----RGILRT---EMSLVLTI 575
            GGQ  DTG  + +G     + +Q K +G   VH+  +      G+L+T     ++ +T+
Sbjct: 100 GGGQPTDTGKILVEGRDKLWSVLQAKRQGGHAVHYVEIPGGDVDGVLQTFKPGTTVTVTL 159

Query: 576 ---DYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCI--TPDGLRFDVTHS 624
              DY  R      H++ HLL   L T L       S  S    C    P GL       
Sbjct: 160 DDQDYNKRYDHMSMHTSQHLLSALLETRLNLPTLSWSLTSYPAPCYVEVPRGL------- 212

Query: 625 KPITSAELKSIEDNVN-------------DIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
              TS E+ ++++  N             D++ ++ P  T   N   ++  G    L   
Sbjct: 213 ---TSDEILAVQNEANRLVFEGRRVHVEVDVLEESQPRPTDPANSR-SVGKG----LPDD 264

Query: 672 YNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI-----VSESSIRAGIRRIEA 725
           Y   V R+V +E    GV  +  C GTH+ S   + L  +     +S SS  +   R+  
Sbjct: 265 YTGGVKRIVVIE----GVDRNPCC-GTHLPSIHNLQLFLLPHTEALSRSSTTSA--RLYF 317

Query: 726 ITGQR-----ARSH-LMGQDEKLKSL-ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           + G R     A+SH L+ Q   L S  A  L    G V+   +   +   +L++  A R 
Sbjct: 318 LAGPRLIDHLAKSHGLLTQSAALLSCGAPLLPERLGQVIDDRKRADKRVGELEIELAGRI 377

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDS 806
            Q  V+ L+  K     F  H+    DS
Sbjct: 378 AQDLVQKLASEKAYKSVFSHHLHRTEDS 405


>gi|312863291|ref|ZP_07723529.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100827|gb|EFQ59032.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  I  DG  +D    +  I++ 
Sbjct: 59  IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNEAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGG 687
           +L  IE+ +  I+ +N P +     RE+     A  +     ND  ++  +E    ++GG
Sbjct: 117 DLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGG 168

Query: 688 V------HSSALCGGTHVSSTGEIMLLYIVS 712
           +          LC G HV STG I + ++++
Sbjct: 169 LTIYRQGEYVDLCRGPHVPSTGRIQVFHLLN 199


>gi|227872012|ref|ZP_03990397.1| threonine--tRNA ligase [Oribacterium sinus F0268]
 gi|227842155|gb|EEJ52400.1| threonine--tRNA ligase [Oribacterium sinus F0268]
          Length = 627

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 15/174 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H+L  A+  + G  V         DG  +D    K ++  + K+IED + +II + 
Sbjct: 14  HSLAHILAKAMVELYGPEVQYAIGPQIEDGCYYDFALPKSLSEEDFKTIEDKMREIIKRR 73

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGTHV 699
                  ++RE A+    A     K+   +        V+S+ Y  G      LC G HV
Sbjct: 74  EDWTREELSREAAL----ALFDKQKFKKELIQDLPADEVISI-YRTGDDFVD-LCRGPHV 127

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            ++ E+M +      SI     R +    Q  R +L    +K+ +L   LK  Q
Sbjct: 128 ENSQELMNV-AFQIKSISGAYWRGDEHRDQLQRVYLFAYPDKI-ALKEHLKWLQ 179


>gi|71418959|ref|XP_811024.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70875641|gb|EAN89173.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L +AL  +  + +S  G  +   G  ++    +P++  + KSIE  + +++   
Sbjct: 135 HSSSHVLGYALERVFHTRLSV-GPALEEGGFFYEGDTGRPLSETDYKSIEIAMQELVKMK 193

Query: 647 LPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGV------HSSALCGGTHV 699
           +P     +++ DA+      L G T++  ++    V  E+G        H    C G H+
Sbjct: 194 MPYQRLTVSKADAL-----RLFGYTEFKSKILASKVP-ENGFCTVYRCGHLIDPCRGPHL 247

Query: 700 SSTGEIMLLYIVSESS 715
             TG +    +   SS
Sbjct: 248 PDTGRVKAFAVTKNSS 263


>gi|255526047|ref|ZP_05392970.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255510233|gb|EET86550.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ + + + H+ +H+L  A+  +        G  I   G  +D       T   
Sbjct: 59  ILTFDDEDGKWI-LRHTGSHILAQAVKKVYPEVKLAIGPAIDT-GFYYDFDAEFSFTPEM 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  +N II +NL +    + RE+AI      +   K   +V ++    ED  +   
Sbjct: 117 LEKIEVEMNKIIKENLKLERFELPREEAI----KLMQEKKECYKVELIKDLPEDAVISFY 172

Query: 692 A------LCGGTHVSSTGEIMLLYIVS 712
                  LC G HV STG++  + ++S
Sbjct: 173 KQGDFVDLCAGPHVPSTGKVKAVKLLS 199


>gi|228478293|ref|ZP_04062901.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228249972|gb|EEK09242.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQVFHLLN 199


>gi|42523121|ref|NP_968501.1| hypothetical protein Bd1617 [Bdellovibrio bacteriovorus HD100]
 gi|73919772|sp|Q6MML0|SYT_BDEBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39575326|emb|CAE79494.1| thrS [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 24/200 (12%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R +L+ +  + L           + HS  H++  A+  I        G  I  +G  +D 
Sbjct: 54  RTVLKDQTKVALVTTKSPESVEVVRHSCAHIMAQAIQDIWPEVKVTIGPVID-NGFYYDF 112

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRV-- 678
                 T    + IE  +++I++++LP+     +RED  I        G   N+R +V  
Sbjct: 113 DSPFAFTEEHFEKIEKKMSEIVSKDLPI-----HREDWPIQKAIETFKGM--NERFKVEL 165

Query: 679 ---------VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                     +V     G     LC G H+ STG+I    ++   S+     R +    Q
Sbjct: 166 IEDLAKKGETTVGIYFNGTSWFDLCRGPHIQSTGQIKAFKLL---SVAGAYWRGDEKNAQ 222

Query: 730 RARSHLMGQDEKLKSLASFL 749
             R +    ++K K L ++L
Sbjct: 223 LQRVYATAFNDK-KDLETYL 241


>gi|312882276|ref|ZP_07742021.1| Threonyl/alanyl tRNA synthetase SAD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370043|gb|EFP97550.1| Threonyl/alanyl tRNA synthetase SAD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 81/206 (39%), Gaps = 54/206 (26%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRT 567
           Q   V+   T F+   GGQ  D G  IGD I L    D Q      FVH  + +R I   
Sbjct: 27  QTFHVILSSTIFHPRGGGQASDQGM-IGDSIMLGAFIDEQG-----FVH--VTDRAIAVG 78

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLL-----HHALSTILGSHVSQNGSCITPDGLRFDVT 622
            + L  ++D   R   S  HSA HLL      + L  I GSH+      +          
Sbjct: 79  PVKL--SVDPTIRHLHSRYHSAGHLLAYVGEKYGLVGIKGSHLPNQARVVF--------- 127

Query: 623 HSKPITSA---ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
             +P TSA     + I+ ++  +I  NLP       R+  I +            + R V
Sbjct: 128 --QPTTSAIEVTKEQIQADLEKLILDNLP-------RKQKIEA------------KTRFV 166

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI 705
           S      G    + CGGTHV ST +I
Sbjct: 167 S-----WGDFPYSACGGTHVLSTQDI 187


>gi|326436972|gb|EGD82542.1| hypothetical protein PTSG_03194 [Salpingoeca sp. ATCC 50818]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 37/216 (17%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ--KKAEGIFVHHAIVERG----ILR 566
           V+ +QT F+ + GGQ  DTG    D    ++T V+  K   G+  H              
Sbjct: 59  VLLNQTLFHPQGGGQPSDTGTITKDDAVFRVTHVRISKDRHGVVEHLGTFANPNSTLCAG 118

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLH---HALSTILGSHVSQNGSCITPDGLRFDVTH 623
            E+SL +  D + RR  S  HSA HLL    H+   +L + +   G       L      
Sbjct: 119 DEVSLAVDAD-KRRRHASRLHSAGHLLDAAMHSAGHLLDAAMQAIGRTDLDTRLHLHCAR 177

Query: 624 SKPI--------TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           +            +A +  + + V+ ++++N  V  RI + E           G++    
Sbjct: 178 ATEYIGAIPAEERAAVVARLNEAVSTLVSKNTDVSMRIYDVE-----------GSELPR- 225

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            RVVSV    GG   +  CGGTHV++T ++  L + 
Sbjct: 226 -RVVSV----GGCECA--CGGTHVNNTSQLQGLRVT 254


>gi|329115958|ref|ZP_08244675.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906363|gb|EGE53277.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 70/146 (47%), Gaps = 10/146 (6%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSA 630
           ++T D+++   + + HSA HL   A   +        G  IT +G  +D    +  I++ 
Sbjct: 59  IVTPDHEDAFSV-LRHSAAHLFAQAAKRLFPEIHLGVGPAIT-EGFYYDTDNQAGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI----ASGAAALLGTKYNDRVRVVSVEYEDG 686
           +L  IE+ +  I+ +N P +   +++++A+           L +++ D    +++ Y  G
Sbjct: 117 DLPRIEEEMKKIVKENFPCIREEVSKDEALDIFKDDPYKVELISEHADDAAGLTI-YRQG 175

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS 712
                 LC G HV STG I + ++++
Sbjct: 176 EF--VDLCRGPHVPSTGRIQVFHLLN 199


>gi|323335842|gb|EGA77121.1| YNL040W-like protein [Saccharomyces cerevisiae Vin13]
 gi|323346922|gb|EGA81201.1| YNL040W-like protein [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352599|gb|EGA85098.1| YNL040W-like protein [Saccharomyces cerevisiae VL3]
          Length = 452

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 123/290 (42%), Gaps = 36/290 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           E+    T  + E GGQ  D+G   I +G R        K E I V H  V R  L  +  
Sbjct: 42  EIELQDTILFPEGGGQPSDSGFLKIVEGNR-----NSSKIEKILVSH--VSRFGLHAKHH 94

Query: 569 --------MSLVLTIDYQNRRQLSINHSATHLL------HHALSTI---LGSHVSQNGSC 611
                    ++ + +D Q R      H+  HLL      ++ + T+   +G  +++    
Sbjct: 95  VNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPV 154

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLG 669
           + P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + + 
Sbjct: 155 LEPSDYFNYIELNRKLTLDEITNVSDEINQLII-NFPQEIIVEERIGEETVDEVSTSKIP 213

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITG 728
             Y D  + V      G + S+  C GTH+  T +I   L + ++S++R    R+  + G
Sbjct: 214 DDY-DLSKGVLRTIHIGDIDSNPCC-GTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMCG 271

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +R   +    ++ L    + L  S+  +    E+I  + +++Q ++ + +
Sbjct: 272 KRVSLYAKSVNKILLDSKNLLSCSETQI---SEKITRQTKQIQQLNKREQ 318


>gi|187736219|ref|YP_001878331.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426271|gb|ACD05550.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 630

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 23/157 (14%)

Query: 578 QNRRQLS----INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           + R+Q+S    + HS  H+L  A+  +        G  +  +G  +DV     I++ + +
Sbjct: 11  EERQQMSDLERLRHSCAHVLATAICRLWPDAQLAGGPAVD-NGFYYDVELDHRISTEDFE 69

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYN-DRVRV----------- 678
            IE+ +  ++ +N      +++R DA+    SG    LG +    R ++           
Sbjct: 70  RIEEEMKKVVKENQVFQKEVISRADAMKMAESGELGALGPRSEPSRFKIDLLNDIPEDEE 129

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +S+ Y +G    + LC G HV  TG      I+S +S
Sbjct: 130 ISL-YRNGDF--TDLCAGPHVGRTGNCKAFKIMSVAS 163


>gi|77458158|ref|YP_347663.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123758422|sp|Q3KEY2|SYT_PSEPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77382161|gb|ABA73674.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 640

 Score = 41.6 bits (96), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  ++ +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAFERPFTPDDMAAIEQRMHQLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
               V+ ++  R + I    A   G  Y  R+       + + + Y +  V    +C G 
Sbjct: 130 TEYDVIKKVTPRAEVIEVFKAR--GEDYKLRLVEDMPNEQAMGLYYHEEYVD---MCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|296114661|ref|ZP_06833313.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978757|gb|EFG85483.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+S +        G   T  G  +D    +  T  +L  IE  +++I+ 
Sbjct: 32  IRHDTAHVLAQAVSELFPGTALATGPA-TEQGFFYDFAAERAFTDDDLVRIEARMHEIVD 90

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGGTH 698
           ++ P++     RE A+A       G  Y  + +R + ++     Y  G      LC G H
Sbjct: 91  RDEPIIREEWKRESALAWCQEN--GQPYKAEIIRSLPLDAVLSFYRQGNF--VDLCRGPH 146

Query: 699 VSSTGEI 705
           + STG+I
Sbjct: 147 LGSTGQI 153


>gi|255523789|ref|ZP_05390754.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|255512492|gb|EET88767.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
          Length = 238

 Score = 41.6 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 23/211 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T FY   GGQ  D G    D    +    + K +G  V+H I   G L  E++ +
Sbjct: 29  VILDKTAFYIGGGGQPCDVGVLKTD--VNKYVVKKVKKKGNDVYHYI--DGKL-PEVNEI 83

Query: 573 LT--IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            T  ID+ +R +L   H+A H+L   +     + V+          + F+  +      A
Sbjct: 84  CTGKIDWDHRYKLMRTHTAMHILCGVVWRDYKAQVTGGDMDCLKGRMDFEFQN---FDKA 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYE 684
            ++ IE+ VN  +     +   I+ RE+A+      L+ TK N       ++R V +E  
Sbjct: 141 LVEEIEEKVNKEVQCKRDIKVNILEREEALK--IPDLIRTKINLLPEGIKQIRTVEIEGL 198

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           D         GGTHV +T E+  + IV   S
Sbjct: 199 DLQAD-----GGTHVKNTSEVGKIKIVDYKS 224


>gi|222056447|ref|YP_002538809.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221565736|gb|ACM21708.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +HL+  A+  +        G  I   G  +D     P T  +L+ IE+ + ++  
Sbjct: 82  IRHSTSHLMAQAVKALFPEAKVTIGPAIET-GFYYDFDVDHPFTPEDLEKIENKMQELAK 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---------LCG 695
            NL +  ++++  DAI       LG  Y  +V ++    ED G  + +         LC 
Sbjct: 141 ANLKIERQVLSGADAIRLFGD--LGESY--KVELI----EDLGAATVSLYRQGDFVDLCR 192

Query: 696 GTHVSSTGEIMLLYIVS 712
           G H+ ST  I    + S
Sbjct: 193 GPHLPSTSHIKAFKLTS 209


>gi|312134685|ref|YP_004002023.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774736|gb|ADQ04223.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++H+L  A+  + G  V          G  +D    + IT+  L+ IE  +  II ++
Sbjct: 75  HTSSHILAQAVKRLFGDRVKLGIGPAIDRGFYYDFDIEESITNEILQKIEQEMQKIIKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           L +    + R++AI        G  Y     ND     ++ +   G     LC G H+ S
Sbjct: 135 LKIERFELTRDEAIKLMQER--GEPYKVELINDIPEGETISFYKQGEFID-LCTGPHLPS 191

Query: 702 TGEIMLLYIVS 712
           TG++    ++S
Sbjct: 192 TGKVKAFKLLS 202


>gi|167035295|ref|YP_001670526.1| synthetase [Pseudomonas putida GB-1]
 gi|166861783|gb|ABZ00191.1| synthetase, putative [Pseudomonas putida GB-1]
          Length = 262

 Score = 41.6 bits (96), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKP 626
           M   +TID + R +L+++HSA+H L +A +  L   + Q   G  I  D  RFD      
Sbjct: 111 MPARVTIDIERRERLTLSHSASHFL-YAAAIGLREELKQWTIGCHIKEDSARFDFLVEDA 169

Query: 627 ITSAELKSIEDNVNDIIAQNLPV 649
            T+ ++  IE   N++I    P+
Sbjct: 170 FTAEDVVEIERRANELIGCEAPI 192


>gi|307298932|ref|ZP_07578734.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915357|gb|EFN45742.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 648

 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 23/200 (11%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAI--VERGILRTEMSLVLTIDYQNRRQLSIN 586
           G T   I  GI      + ++A G  V   +  +ER I + + S+ L +D          
Sbjct: 18  GITPAEIAKGIS---EGLARRAFGAIVDEELWDLERPIEK-DASVKLVLDKDPESSRFFR 73

Query: 587 HSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIA 644
           H+ +H+L  A+  + G   V         +G  +D+   +  IT  +L  IE  ++ II 
Sbjct: 74  HTMSHILAQAIMRLYGKEKVKLAIGPTIENGFYYDIDLGETRITEEDLPKIESEMSKIIK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA---------LC 694
           ++LPV      R +   S A  L+  +    +V+++    +D G              LC
Sbjct: 134 EDLPV-----ERFELPVSEAIELMKREDQPYKVQLIEDLVKDTGAEKVTFYKQGEFVDLC 188

Query: 695 GGTHVSSTGEIMLLYIVSES 714
            G HVSSTG++    + S S
Sbjct: 189 RGPHVSSTGKVKYFKLTSVS 208


>gi|260591627|ref|ZP_05857085.1| threonine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536427|gb|EEX19044.1| threonine--tRNA ligase [Prevotella veroralis F0319]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  +  +G  +DV   K   I+  +   IE+ + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAVE-NGFFYDVMPPKGQAISENDFPKIEEKMRELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCGGTH 698
           +N  VV   +++ +A+    A   G +Y  +V  +  + EDG + +      + LC G H
Sbjct: 132 KNEQVVRHDISKANAVKEFTAD--GQEY--KVEHIEQDLEDGTISTYTQGSFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LVSTGAIKAIKITS 201


>gi|289450372|ref|YP_003474769.1| threonine/alanine tRNA ligase second additional domain-containing
           protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184919|gb|ADC91344.1| threonine/alanine tRNA ligase second additional domain protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 535

 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID+Q R      HSA HL         G      G  ++   +  D+  +K +   +L
Sbjct: 146 LEIDWQRRYDFMQQHSAEHLFSGLAKREFG--CDNVGFHLSETVMTMDL--NKNLGEKDL 201

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           + +E   N I+ +       +    D I        AL G     +VR++ +   D    
Sbjct: 202 QKLERAANAIVWERRATKATVYPSVDVIEIDFRQKKALPG-----KVRILEIPGAD---- 252

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
               C G HV++T EI ++ ++S    R GIR   A  GQR   HL  + E L  + 
Sbjct: 253 -CCACCGLHVANTVEIGMVKVLSAEKHRGGIRVFLA-AGQRLYDHLSREHEILAEIC 307


>gi|189345705|ref|YP_001942234.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|238692169|sp|B3EEC1|SYT_CHLL2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189339852|gb|ACD89255.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 657

 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D Q  R +   H+A+H++  A+  I        G   T  G  +DV         +
Sbjct: 68  IVTFDSQLGRDI-FWHTASHIMAQAIEEIFPGSRFGAGPA-TEQGFYYDVASEHRFREED 125

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L++IE  + +I  +N+ +    M R DAI     A   +  ND  +V  +E         
Sbjct: 126 LRAIEQKMLEIAKRNIMLQREEMKRVDAI-----AYFTSVRNDPYKVEILEDTLKHVDTV 180

Query: 683 --YEDGGVHSSALCGGTHVSSTGEI--MLLYIVSES-----SIRAGIRRIEAI---TGQR 730
             Y  G    + LC G H+ ST  +  +LL  +S S     S R  ++RI  I   + + 
Sbjct: 181 SLYHQGDF--ADLCTGPHLPSTSRLKAVLLSNISSSYWRGDSSRENMQRIYGIAFPSDKL 238

Query: 731 ARSHLMGQDE 740
            + H+  Q+E
Sbjct: 239 LKEHIARQEE 248


>gi|73951035|ref|XP_857273.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 5
           [Canis familiaris]
          Length = 687

 Score = 41.6 bits (96), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 34/160 (21%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPI 627
           +LT D     Q    HS+ H+L  A+    G H+     C  P   +G  +D+    + +
Sbjct: 217 LLTFD-NEEAQAVYWHSSAHILGEAMELYYGGHL-----CYGPPIENGFYYDMFIEDRAV 270

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDG 686
           +S EL ++E+    II +  P        E    S    L   KYN  + R+++ +    
Sbjct: 271 SSTELSALENICKTIIKEKQPF-------ERLEISKEVLLEMFKYNKFKCRILNEK---- 319

Query: 687 GVHSSA-----------LCGGTHVSSTGEIMLLYIVSESS 715
            VH+S            LC G HV  TG+I  + I   SS
Sbjct: 320 -VHTSTTTVYRCGPLIDLCKGPHVRHTGKIKAIKIFKNSS 358


>gi|89100404|ref|ZP_01173268.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084923|gb|EAR64060.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 234

 Score = 41.6 bits (96), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I   G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKRLHKGAKFGVGPVIE-GGFYYDVDLEESLTPEDLPLIEKEMAKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTH 698
           +N+ V  + ++RE+A+       +G +Y   +     E      YE G    + LC G H
Sbjct: 133 ENIDVHRKAVSREEAVEFFKE--IGDEYKLELIEAIPEGETVTLYEQGDF--TDLCRGVH 188

Query: 699 VSSTGEIMLLYIVS 712
           V STG+I    ++S
Sbjct: 189 VPSTGKIKEFKLLS 202


>gi|226328741|ref|ZP_03804259.1| hypothetical protein PROPEN_02641 [Proteus penneri ATCC 35198]
 gi|225201927|gb|EEG84281.1| hypothetical protein PROPEN_02641 [Proteus penneri ATCC 35198]
          Length = 73

 Score = 41.6 bits (96), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ML  IS + K S+++ VT+DL  +  A +L    A+ +GG GGG RP MAQ+GG + +  
Sbjct: 1   MLSTIS-DGKVSLIVGVTKDLTAKVKAGELISFVAQQIGGKGGG-RPDMAQAGGTDIDAL 58

Query: 886 DQAIAGVASFLK 897
             A+A V  +++
Sbjct: 59  PAALASVDEWVE 70


>gi|323303264|gb|EGA57062.1| YNL040W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 122/290 (42%), Gaps = 36/290 (12%)

Query: 512 EVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           E+    T  + E GGQ  D+G   I +G R        K E I V H  V R  L  +  
Sbjct: 46  EIELQDTILFPEGGGQPSDSGFLKIVEGNR-----NSSKIEKILVSH--VSRFGLHAKHH 98

Query: 569 --------MSLVLTIDYQNRRQLSINHSATHLL------HHALSTI---LGSHVSQNGSC 611
                    ++   +D Q R      H+  HLL      ++ + T+   +G  +++    
Sbjct: 99  VNDYIEPGTTVEXAVDEQKRMDYMQQHTGQHLLSAILERNYKVXTVSWSMGGIITKKKPV 158

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLG 669
           + P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + + 
Sbjct: 159 LEPSDYFNYIELNRKLTLDEITNVSDEINQLII-NFPQEIIVEERIGEETVDEVSTSKIP 217

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITG 728
             Y D  + V      G + S+  C GTH+  T +I   L + ++S++R    R+  + G
Sbjct: 218 DDY-DLSKGVLRTIHIGDIDSNPCC-GTHLKCTSQIGSXLILXNQSAVRGSNSRLYFMCG 275

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           +R   +    ++ L    + L  S+  +    E+I  + +++Q ++ + +
Sbjct: 276 KRVSLYAKSVNKILLDSKNLLSCSETQI---SEKITRQTKQIQQLNKREQ 322


>gi|288924947|ref|ZP_06418883.1| threonine--tRNA ligase [Prevotella buccae D17]
 gi|288338137|gb|EFC76487.1| threonine--tRNA ligase [Prevotella buccae D17]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  I  +G  +DV  +  + I+  +   IE  + ++  
Sbjct: 73  HTSAHLLAEALKELYPGIQFGFGPAIE-NGFFYDVMPASGQTISENDFPKIEAKMLELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCGGTH 698
           ++ PVV R + + +A+    A   G  Y  +   + ++ EDG + +      + LC G H
Sbjct: 132 KDEPVVRREVPKAEALEEFKAD--GQTY--KCEHIDLDLEDGSISTYTQGNFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  L I S
Sbjct: 188 LMSTGAIKALKITS 201


>gi|302024085|ref|ZP_07249296.1| threonyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330832440|ref|YP_004401265.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329306663|gb|AEB81079.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 649

 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G L      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AIEEDGTLE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIKLGVGPAIQ-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  I++ +  I+ +N P   R + +E+AI           Y  ++
Sbjct: 103 YYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEAI----EIFKNDPY--KL 156

Query: 677 RVVSVEYEDGG---VHSSA----LCGGTHVSSTGEIMLLYIVS 712
            ++    +D G   +++      LC G HV STG I +  +++
Sbjct: 157 ELIQEHSDDEGGLTIYTQGEYIDLCRGPHVPSTGRIQIFELLN 199


>gi|326391979|ref|ZP_08213481.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991980|gb|EGD50470.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 72/151 (47%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTERPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
            ++IE  +N II ++  +   ++ +++AI       L  + ++  +V  +E         
Sbjct: 116 FEAIEQEMNRIIKEDYKLERFVLPKDEAIK------LMKEKDEPYKVELIEEIPEGEEIS 169

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G    + LC G H+ STG +  + ++S
Sbjct: 170 FYKQGEF--TDLCAGPHLMSTGMVKTIKLLS 198


>gi|307719284|ref|YP_003874816.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306533009|gb|ADN02543.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +        G  I   G  +D    + +T  +L+ IE+ +   I 
Sbjct: 9   IRHSAAHIMADAVLRLFPEAKFAIGPAID-TGFYYDFDLPRSLTPEDLEKIEELMRKTIE 67

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++LP    +++RE+A            Y   +     E E+  ++       LC G HV 
Sbjct: 68  EDLPFEREVISREEA----RELFKDQPYKLEILEEIPEGEEVSIYRHGTFVDLCRGPHVE 123

Query: 701 STGEI 705
            TG+I
Sbjct: 124 RTGQI 128


>gi|315186787|gb|EFU20545.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Spirochaeta
           thermophila DSM 6578]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +        G  I   G  +D    + +T  +L+ IE+ +   I 
Sbjct: 9   IRHSAAHIMADAVLRLFPEAKFAIGPAID-TGFYYDFDLPRSLTPEDLEKIEELMRKTIE 67

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++LP    +++RE+A            Y   +     E E+  ++       LC G HV 
Sbjct: 68  EDLPFKREVISREEA----RELFKDQPYKLEILEEIPEGEEVSIYRHGTFVDLCRGPHVE 123

Query: 701 STGEI 705
            TG+I
Sbjct: 124 RTGQI 128


>gi|218886086|ref|YP_002435407.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226701453|sp|B8DPN2|SYT_DESVM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218757040|gb|ACL07939.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 644

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +        G  I   G  +D  + +P +  +L++IE  +  I+A
Sbjct: 71  IRHSAAHIMAEAVQKLFPGVKVTIGPAID-SGFYYDFDYERPFSVDDLEAIEAEMQKIVA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
              P     M +++A+A      +G  Y   + V  +  +   V+ S     LC G H+ 
Sbjct: 130 AAHPFTRTEMTKDEAVALFEG--MGEAYKVEI-VRDIPADTVSVYRSGDFVDLCRGPHIP 186

Query: 701 STGEIMLLYIVS 712
            T  +    ++S
Sbjct: 187 DTSFVKAFKLLS 198


>gi|153870647|ref|ZP_02000003.1| threonyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152072887|gb|EDN69997.1| threonyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++  +     G  +   G  +D  + K  +  +L+ I+  + +++A
Sbjct: 71  IRHSCAHLMAQAVKSLFPTAQVTIGPVVE-HGFYYDFAYEKSFSPEDLEKIQAKMEELVA 129

Query: 645 QNLPVVTRIMNREDAI 660
           QN  V   +M+R +AI
Sbjct: 130 QNFTVTRSVMSRHEAI 145


>gi|119383706|ref|YP_914762.1| threonyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|166225473|sp|A1B0M2|SYT_PARDP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119373473|gb|ABL69066.1| Ser-tRNA(Thr) hydrolase [Paracoccus denitrificans PD1222]
          Length = 648

 Score = 41.2 bits (95), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 32/236 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+   L   V      +   G  +D   ++P T  +L +IE  +  IIA
Sbjct: 74  IRHDLAHIMARAVQE-LWPDVKVTIGPVRDQGWFYDFDRAEPFTPEDLGAIEQRMKQIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVS 700
              PV T + +R+ A A   A     K     R+   E    Y  G      LC G H+ 
Sbjct: 133 ARDPVRTEVWDRDRARAHYEAQGEPFKIELLDRIPEGEPIRMYWHGDWQD--LCRGPHLQ 190

Query: 701 STGEIML----------LYIVSESSIRAGIRRIEAITGQRA---RSHLMGQDEKLK---- 743
            TG++             Y + ++S R  ++RI  +  +     ++HL   +E  K    
Sbjct: 191 HTGQVPADAFKLTHVAGAYWLGDAS-RPMLQRIYGVAFRNRDDLKAHLTMLEEAAKRDHR 249

Query: 744 ------SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
                  L  F + + G V       W  YR+L+    +R ++ + +++   ++ D
Sbjct: 250 KLGREMELFHFQEEAPGMVFWHPNG-WSIYRELEAYMRRRLIRADYKEIKTPQVVD 304


>gi|307266242|ref|ZP_07547784.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918772|gb|EFN49004.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 72/151 (47%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +++   H+++H+L  A+  +        G  I  +G  +D    +P T+ +
Sbjct: 58  ILTFDDEEGKKIYW-HTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTERPFTTED 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
            ++IE  +N II ++  +   ++ +++AI       L  + ++  +V  +E         
Sbjct: 116 FEAIEQEMNRIIKEDYKLERFVLPKDEAIK------LMKEKDEPYKVELIEEIPEGEEIS 169

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G    + LC G H+ STG +  + ++S
Sbjct: 170 FYKQGEF--TDLCAGPHLMSTGMVKTIKLLS 198


>gi|281423114|ref|ZP_06254027.1| threonine--tRNA ligase [Prevotella oris F0302]
 gi|281402450|gb|EFB33281.1| threonine--tRNA ligase [Prevotella oris F0302]
          Length = 649

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  +   G  +DV   K   I+  +   IE  + ++  
Sbjct: 73  HTSAHLLAEALQELYPGIQFGFGPAVE-SGFFYDVMPPKGQTISENDFPKIEAKMLELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           ++ PVV + +++ DA+    A   G  Y  +   +  + EDG +      H + LC G H
Sbjct: 132 KDEPVVRKNISKSDALQEFQAD--GQTY--KCEHIEQDLEDGTISTYTQGHFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  + I S
Sbjct: 188 LMSTGLIKAVKITS 201


>gi|315607978|ref|ZP_07882971.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250447|gb|EFU30443.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 650

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           H++ HLL  AL  +        G  I  +G  +DV  +  + I+  +   IE  + ++  
Sbjct: 73  HTSAHLLAEALKELYPGIQFGFGPAIE-NGFFYDVMPAGGQTISENDFPKIEAKMLELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCGGTH 698
           ++ PVV R + + +A+    A   G  Y  +   + ++ EDG + +      + LC G H
Sbjct: 132 KDEPVVRREVPKAEALEEFKAD--GQTY--KCEHIDLDLEDGSISTYTQGNFTDLCRGPH 187

Query: 699 VSSTGEIMLLYIVS 712
           + STG I  L I S
Sbjct: 188 LISTGAIKALKITS 201


>gi|301794619|emb|CBW37067.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 647

 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 19/137 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D  ++   I++ +L  IE+ +  I+
Sbjct: 71  LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNTAGQISNEDLPRIEEEMQKIV 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    ++GG+          LC
Sbjct: 130 KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGGLTIYRQGEYVDLC 181

Query: 695 GGTHVSSTGEIMLLYIV 711
            G HV STG I + +++
Sbjct: 182 RGPHVPSTGRIQIFHLL 198


>gi|291404015|ref|XP_002718268.1| PREDICTED: threonyl-tRNA synthetase-like 2-like [Oryctolagus
           cuniculus]
          Length = 709

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 23/162 (14%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV 621
           L+ + +L L   +    Q    HS+ H+L  A+    G H+     C  P   +G  +D+
Sbjct: 119 LQGDCTLELLTFHSEEAQAVYWHSSAHVLGEAMELYYGGHL-----CYGPPIENGFYYDM 173

Query: 622 -THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVV 679
               + ++S EL ++E+    II +  P        E    S    L   KYN  + R++
Sbjct: 174 FIEDRAVSSTELPALENMCKAIIKERQPF-------ERLEVSKEVLLEMFKYNKFKCRIL 226

Query: 680 S--VEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESS 715
           +  V+     V+       LC G HV  TG+I  + I   SS
Sbjct: 227 NEKVDTPTTTVYRCGPLVDLCKGPHVRHTGKIKAIKIFKNSS 268


>gi|308272327|emb|CBX28933.1| Threonyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 637

 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 21/130 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  I        G  +  DG  +D+   +P++  +   IE  +  II+
Sbjct: 71  LRHSAAHVMAQAILHIYKDAKLTIGPVVE-DGFYYDID-MEPVSREDFGKIEAEIKKIIS 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVH------SSALCG 695
             +P   +++++E+A+           Y D   ++ ++S E EDG +        + LC 
Sbjct: 129 AKIPFKRKLVSKEEALKF---------YKDEPYKLEIIS-ELEDGTISLYEQGDFTDLCR 178

Query: 696 GTHVSSTGEI 705
           G H+  TG I
Sbjct: 179 GPHLPHTGFI 188


>gi|269468339|gb|EEZ80013.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 630

 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A   +        G  I  +G  +D  +    +  +L  IE N+N ++ 
Sbjct: 71  IRHSTAHLLAQATQMLYPDAQVTIGPVID-NGFFYDFAYKDGFSEGDLAKIEKNMNHLVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           QNL +    M R++A+        G  Y   +       + +S+ Y+ G      LC G 
Sbjct: 130 QNLKIERSEMGRDEAVQFFKDK--GEYYKAEIIESIPADQTLSL-YQQGDFID--LCRGP 184

Query: 698 HVSSTGEI 705
           HV ST ++
Sbjct: 185 HVPSTAKL 192


>gi|303242609|ref|ZP_07329085.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302589866|gb|EFL59638.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D +  R  +  H+ +H++  A+  +  +     G  I  +G  +D    KP +  E
Sbjct: 59  LMTFDDEGGRH-AYRHTTSHIMAQAVKNLYPNVKLAIGPAID-NGYYYDFDVEKPFSVEE 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYE 684
           L  IE+ +  I+ ++L +    + R++AI        G  Y   +        ++S  Y+
Sbjct: 117 LAQIEEEMKKIVKEDLKLERFTLPRDEAIKFMEEK--GEPYKVELIRDLPEGEIISF-YK 173

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            G      LC G H+ STG+I    ++S
Sbjct: 174 QGDF--VDLCAGPHLESTGKIKAFKLLS 199


>gi|70726243|ref|YP_253157.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68446967|dbj|BAE04551.1| threonyl-tRNA synthetase 1 [Staphylococcus haemolyticus JCSC1435]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D    + ++S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVID-GGFYYDFDMDEKVSSDDFEKIEKTMKQIVD 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N  +  ++++RE+A     +      Y  ++ ++    ED  V        + LC G H
Sbjct: 132 ENHKIERKVVSREEA----KSFFKDDPY--KLELIDAIPEDESVTLYSQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTSKIKEFKLLS 199


>gi|326469102|gb|EGD93111.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 265

 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 85/211 (40%), Gaps = 34/211 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA--EGIFVHHAIVERGILRTEM 569
           VV ++T F+ + GGQ  D G      G    +  V+  A  +G  +H             
Sbjct: 48  VVTEKTIFHPQGGGQPSDIGMITSSTGSSFTVASVRMDALQDGQVLHLGRFGSSTFAPGE 107

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----------GSHVSQNGSCITPDGLR 618
           ++   ID + R   S  H+A H+L  A+  ++            SH   + +C    GL 
Sbjct: 108 TVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFEELKASHFPDSAACEF-RGL- 165

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYND 674
                   I      SI+D VN+ IA+ +PV     + +D  + G   L+         +
Sbjct: 166 --------IEGKWKPSIQDKVNEFIAEAMPVEIEWWDEDDFRSRGLERLIPDPTLVPPGE 217

Query: 675 RVRVVSV----EYEDGGVH--SSALCGGTHV 699
           + RVV++     Y  GG H  ++ LCG T V
Sbjct: 218 KSRVVNIVGAEVYPCGGTHVDTTDLCGHTTV 248


>gi|325972697|ref|YP_004248888.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027935|gb|ADY14694.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 581

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +  S     G  I  +G  +D    + + + +L+ I   +  IIA
Sbjct: 13  IRHSMAHVMAEAVLQMFPSAQITIGPAID-NGFYYDFDLPRQLVNDDLEEIAARMKAIIA 71

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSS 701
           +  P V  +++R +A    A      +  D +     VS+ Y  GG   + LC G HV S
Sbjct: 72  EGKPFVRTVVSRAEARKQFADQTYKLELLDAIAEGEEVSL-YSQGGF--TDLCRGPHVES 128

Query: 702 TGEI 705
           T E+
Sbjct: 129 TKEL 132


>gi|241761215|ref|ZP_04759303.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374122|gb|EER63619.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDI 642
           + H   H+L  A+  +  G+ ++     +T DG  +D     +P T  +L  IE  +  I
Sbjct: 75  VRHDYAHILAEAVQKLFPGTQIT--FGPVTDDGFYYDFAPKDRPFTEEDLPLIEAEMRKI 132

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           IAQN  +V  +  R+  I+   +   G K+         E ++  ++ +     +C G H
Sbjct: 133 IAQNNALVREVWERDKLISLWESQ--GEKFKAEWAKELPEGQELTIYRAGEWFDMCRGPH 190

Query: 699 VSSTGEI 705
           + STG++
Sbjct: 191 LPSTGKL 197


>gi|254167237|ref|ZP_04874090.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|197624093|gb|EDY36655.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
          Length = 387

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 29/249 (11%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+  E   G K   +   T  Y   GGQ  D G AI +G    I  +     G   H   
Sbjct: 13  EVEVEERKGNKC--LLSDTILYPGGGGQPLDEGIAICNGEEFSIKHI-----GSLWHEI- 64

Query: 560 VERGILRTE-MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
              GI + + M ++L  D   RR L +    +H   H     L +  ++ G      G  
Sbjct: 65  --DGICKCDKMKIILNWD---RRYLLMR---SHTAEHTFFRFLENKGAKMGKIAL--GEV 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVR 677
             +     IT+ ++   E    ++I +   V T  +N+++        +   +  D ++R
Sbjct: 115 SSIIFQGDITTEDILDAEKRTRELIKEGRNVTTFWINKDEIRNYPDLRIKLERIKDEKIR 174

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLM 736
           VV +E      H  + C G H+S+  EI    IV     R G R+ ++ + G+ AR++  
Sbjct: 175 VVKIE-----GHDLSACKGVHISNLSEIEDFAIV---HFRMGKRKEVKFVIGEMARNYHY 226

Query: 737 GQDEKLKSL 745
              + L+ L
Sbjct: 227 RASQSLRKL 235


>gi|119476522|ref|ZP_01616873.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119450386|gb|EAW31621.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 13/128 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D       ++ +L+ IE  + +I  
Sbjct: 71  IRHSTAHLMAMAVQELFPGVQVTIGPVIE-DGYFYDFATGHSFSTEDLQKIEKRMLEITK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
            +LP+   +M R  AI       +G  Y  ++         +SV Y  G      LC G 
Sbjct: 130 DDLPIERMVMTRTQAIKEFRE--MGENYKVQIIEDLPAGDEISV-YRQGPWRD--LCRGP 184

Query: 698 HVSSTGEI 705
           HV STG++
Sbjct: 185 HVPSTGKL 192


>gi|56551661|ref|YP_162500.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260752754|ref|YP_003225647.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|73919847|sp|Q5NPH1|SYT_ZYMMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56543235|gb|AAV89389.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552117|gb|ACV75063.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 585 INHSATHLLHHALSTIL-GSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDI 642
           + H   H+L  A+  +  G+ ++     +T DG  +D     +P T  +L  IE  +  I
Sbjct: 75  VRHDYAHILAEAVQKLFPGTQIT--FGPVTDDGFYYDFAPKDRPFTEEDLPLIEAEMRKI 132

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           IAQN  +V  +  R+  I+   +   G K+         E ++  ++ +     +C G H
Sbjct: 133 IAQNNALVREVWERDKLISLWESQ--GEKFKAEWAKELPEGQELTIYRAGEWFDMCRGPH 190

Query: 699 VSSTGEI 705
           + STG++
Sbjct: 191 LPSTGKL 197


>gi|148508028|gb|ABQ75826.1| threonine--tRNA ligase [uncultured haloarchaeon]
          Length = 643

 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           +  D  +  +  + HSA H+   AL  +    +   G   T +G  +D+ +     SA +
Sbjct: 61  IVTDQSDEYRRVLRHSAAHVFAQALKRLYPEALLTIGPP-TDEGFHYDIANVDLDESA-V 118

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVSVEYEDGG 687
             IE  + DII  + P+      RE+A    A       +L T+  D   V S   +D  
Sbjct: 119 DDIEAEMKDIIDADYPIERMTKTREEAFEIYADNQYKRDILQTEAADEDEV-SFYQQDEF 177

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +    LC G HV STG+I  + ++S SS
Sbjct: 178 ID---LCEGPHVESTGDIGAVTLLSISS 202


>gi|123968188|ref|YP_001009046.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166225480|sp|A2BQ78|SYT_PROMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123198298|gb|ABM69939.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 638

 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  I  S +      +  DG  +D+      T  +L  IE+ +N +I 
Sbjct: 71  IRHSFAHLIGHAVKQIY-SDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINQLIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSA------LCG 695
            N  V    +++E+AI +        K  D   ++R++    E+G ++         +C 
Sbjct: 130 TNYDVEILQVSKEEAIKT-------FKERDETFKLRIIEEIPEEGLINLYKHEEYIDMCR 182

Query: 696 GTHVSST 702
           G HV +T
Sbjct: 183 GPHVPNT 189


>gi|92111812|gb|ABE73650.1| threonyl-tRNA synthetase [Streptococcus salivarius]
          Length = 165

 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D    +  I++ +L  IE+ +  I+
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNQAGQISNEDLPRIEEEMKKIV 62

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    ++GG+          LC
Sbjct: 63  KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGGLTIYRQGEYVDLC 114

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 115 RGPHVPSTGRIQVFHLLN 132


>gi|157825427|ref|YP_001493147.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166225491|sp|A8GML4|SYT_RICAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157799385|gb|ABV74639.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A   +        G  I  +G  +D    KP T  ++  IE  +++I+ 
Sbjct: 71  IRHDAAHIIAEAAKELFPDIQVTIGPAIE-NGFFYDFAKDKPFTPDDVAMIEARMHEIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           +N  +   + NR+ AI    +  +G  Y   + + S+        Y  G      LC G 
Sbjct: 130 RNEQITRELWNRDKAIEFFKS--IGEHYKAEI-IASIPAGEQITLYRQGNFID--LCRGP 184

Query: 698 HVSSTG 703
           H  STG
Sbjct: 185 HAPSTG 190


>gi|92111786|gb|ABE73637.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
 gi|92111810|gb|ABE73649.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111822|gb|ABE73655.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
          Length = 165

 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D    +  I++ +L  IE+ +  I+
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNQAGQISNEDLPRIEEEMKKIV 62

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    ++GG+          LC
Sbjct: 63  KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGGLTIYRQGEYVDLC 114

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 115 RGPHVPSTGRIQVFHLLN 132


>gi|242278821|ref|YP_002990950.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259516380|sp|C6BRH1|SYT_DESAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242121715|gb|ACS79411.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 642

 Score = 41.2 bits (95), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +  +     G  I   G  +D  + +P T  +L++IE  +   + 
Sbjct: 69  IRHSTAHLMAEAVKKLFPTAKVTIGPSIA-SGFYYDFDYERPFTPEDLEAIEAEMLRRVG 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHV 699
            N      +++  DA+       +G  Y     ND        Y +G    + LC G HV
Sbjct: 128 ANEEFTREVLSSADALKKFEE--MGEDYKIELINDLGEETVSVYTNG--EFADLCRGPHV 183

Query: 700 SSTGEIMLLYIVS 712
           + TG +    ++S
Sbjct: 184 ARTGMLKAFKLLS 196


>gi|312132188|ref|YP_003999528.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
 gi|311908734|gb|ADQ19175.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
          Length = 650

 Score = 41.2 bits (95), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 15/127 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQ 645
           HS+ HL+  AL  +        G  +  +G  +DV T+ KPI+S + K IED + ++  Q
Sbjct: 74  HSSAHLMAEALEALYPGVKFWVGPPVE-NGFYYDVDTNGKPISSDDFKKIEDKMLELARQ 132

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGV------HSSALCGGTH 698
               V   +++ DA+          +  D  ++  +E  EDG +      + + LC G H
Sbjct: 133 KNEYVRIPISKADALK------YFEEKGDEYKLDLLEGLEDGQITLYRQGNFTDLCRGPH 186

Query: 699 VSSTGEI 705
           + +TG I
Sbjct: 187 IPNTGFI 193


>gi|193215696|ref|YP_001996895.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|238692696|sp|B3QUU7|SYT_CHLT3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193089173|gb|ACF14448.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+  A+  +        G  I   G  +DV      + A+L+ IE  + +I  ++
Sbjct: 82  HSSSHLMAQAIEELFPGTKFGAGPSIE-TGFYYDVASEHRFSEADLREIEARMLEISNRD 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEYEDGGVHS-------SALCGGT 697
           L +    ++RE AI         T+  D  +V ++    +D  V S       S LC G 
Sbjct: 141 LQIQREELSREAAI-----EYFKTRREDPFKVEILEDTLKDTPVVSIYHQGEFSDLCSGP 195

Query: 698 HVSSTGEIMLLYIVS 712
           H SST ++  + + S
Sbjct: 196 HFSSTSKLKAVRLTS 210


>gi|157803434|ref|YP_001491983.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166225493|sp|A8EXW5|SYT_RICCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157784697|gb|ABV73198.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T  +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAIE-NGYYYDFARDKPFTVDDLAVIEAKMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGT 697
           +N  V   + NR+ AI    +  +G  Y   + + S+        Y  G      LC G 
Sbjct: 130 KNEKVTRELWNRDKAIEFFRS--IGEHYKAEI-IASIPTDEPITLYRQGNFID--LCRGP 184

Query: 698 HVSSTG 703
           H  STG
Sbjct: 185 HAPSTG 190


>gi|268638348|ref|XP_644871.2| hypothetical protein DDB_G0272913 [Dictyostelium discoideum AX4]
 gi|256013055|gb|EAL71094.2| hypothetical protein DDB_G0272913 [Dictyostelium discoideum AX4]
          Length = 253

 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSI 635
           Q++ + S   SA H+L  A+  +LG+ ++ +  C      R  V +  P   ++  +  I
Sbjct: 3   QSKARDSTTDSACHVLKGAIVKVLGTPITISVECNNKVKGRISVEYEHPEKPSQELINKI 62

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVS-------VEYEDGG 687
           E+  N II QNL   T  +++++A +   + L+   Y  D+  V         VE E+  
Sbjct: 63  EEEANLIIKQNLEFKTFKIDKKEAESKYKSNLVNNTYIYDKFPVPESVTELSLVELENWN 122

Query: 688 VHSSALCGGTHVSSTGEI 705
           ++    C   H+ +TGEI
Sbjct: 123 INC---CPAVHLKTTGEI 137


>gi|126695961|ref|YP_001090847.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166225476|sp|A3PBX1|SYT_PROM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126543004|gb|ABO17246.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 638

 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  I  S +      +  DG  +D+      T  +L  IE+ +N +I 
Sbjct: 71  IRHSFAHLIGHAVKQIY-SDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINKLIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSA------LCG 695
            N  V    +++E+AI +        K  D   ++R++    E+G ++         +C 
Sbjct: 130 TNYDVEILQVSKEEAIKT-------FKERDETFKLRIIEEIPEEGLINLYKHEEYIDMCR 182

Query: 696 GTHVSST 702
           G HV +T
Sbjct: 183 GPHVPNT 189


>gi|302338824|ref|YP_003804030.1| threonyl/alanyl tRNA synthetase SAD [Spirochaeta smaragdinae DSM
           11293]
 gi|301636009|gb|ADK81436.1| Threonyl/alanyl tRNA synthetase SAD [Spirochaeta smaragdinae DSM
           11293]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 62/229 (27%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE-RGILRT-EM 569
           +V  D++ F+A +GGQ  D G  IG               G+ VH A ++ + I+ T EM
Sbjct: 28  KVTLDRSIFFAFSGGQESDYGT-IG---------------GLSVHDACIDGKEIIYTLEM 71

Query: 570 --------SLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPD 615
                   S+++ ID++ R  L   H A  ++   +  +      +G+H+S+  S     
Sbjct: 72  IPSFKKGDSVIIRIDWERRYTLMRLHMAAEIVLVLVMKMFPGIEKIGAHISEKKS----- 126

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             R D      +    L  IE     ++A+++P+++   ++  A      A  G      
Sbjct: 127 --RLDFVADSALRQT-LPEIEKQALALVAEDVPIISDFSDKTAARRFWRIAGFG------ 177

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                          S  CGGTH+  TGEI  L +    +I  G  RIE
Sbjct: 178 ---------------SLPCGGTHLKRTGEIGPLQL-GRKNIGKGKERIE 210


>gi|223932680|ref|ZP_03624679.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223898650|gb|EEF65012.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 650

 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G L      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AIEEDGTLE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIKLGVGPAIQ-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-- 674
            +D  ++   I++ +L  I++ +  I+ +N P   R + +E+A        L    ND  
Sbjct: 103 YYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEA--------LDIFKNDPY 154

Query: 675 RVRVVSVEYEDGG---VHSSA----LCGGTHVSSTGEIMLLYIVS 712
           ++ ++    +D G   +++      LC G HV STG I +  +++
Sbjct: 155 KLELIQEHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELLN 199


>gi|149001904|ref|ZP_01826858.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759713|gb|EDK66703.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 223

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 25/164 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALPI-LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGF 102

Query: 618 RFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D  ++   I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNTAGQISNEDLPRIEEEMQKIVKENFPSI-----REEVTKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIV 711
           ++  +E    ++GG+          LC G HV STG I + +++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL 198


>gi|92111782|gb|ABE73635.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111784|gb|ABE73636.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111788|gb|ABE73638.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111790|gb|ABE73639.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111792|gb|ABE73640.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111794|gb|ABE73641.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111796|gb|ABE73642.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111798|gb|ABE73643.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111800|gb|ABE73644.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111802|gb|ABE73645.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111804|gb|ABE73646.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111806|gb|ABE73647.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111814|gb|ABE73651.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111816|gb|ABE73652.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
 gi|92111818|gb|ABE73653.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
 gi|92111820|gb|ABE73654.1| threonyl-tRNA synthetase [Streptococcus salivarius]
          Length = 165

 Score = 40.8 bits (94), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D    +  I++ +L  IE+ +  I+
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNEAGQISNEDLPRIEEEMKKIV 62

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    ++GG+          LC
Sbjct: 63  KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGGLTIYRQGEYVDLC 114

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 115 RGPHVPSTGRIQVFHLLN 132


>gi|330503839|ref|YP_004380708.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328918125|gb|AEB58956.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 640

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVID-EGFYYDIAIDRPFTPEDMAAIEKRMAELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ R+  R + I    +   G +Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKRMTPRAEVIELFKSR--GEEYKLRLIDDMPDEQAMGLYFHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|328553230|gb|AEB23722.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+A H+L  A+  +        G  I  +G  +D   +  IT  +L +IE  +N II+
Sbjct: 75  MRHTAAHVLAQAVKRLYPKVCLGIGPVIE-NGFYYDFDMNDTITEKDLPAIEKEMNRIIS 133

Query: 645 QNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           +N  +    ++RE+A    A     L       +   VS+  +   V    LC G H++S
Sbjct: 134 ENPKITREEISREEAEQLFAHDPLKLELLADIPQTETVSIYRQSEFV---DLCRGPHLAS 190

Query: 702 TGEI 705
            G+I
Sbjct: 191 AGQI 194


>gi|225873756|ref|YP_002755215.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|259516262|sp|C1F9K5|SYT_ACIC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225794268|gb|ACO34358.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 681

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 20/132 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL+  A+  +       +G   T  G  +D     P T  +LK IE  + +I  
Sbjct: 107 LRHSAAHLMATAVLELFPETKLGHGPA-TDAGFFYDFYRPTPFTPEDLKLIEGRMAEIAQ 165

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSAL 693
           +N   V   + RE+ +A   A       +D ++V  +E           Y +G       
Sbjct: 166 RNDKFVREFIPREEGLAEFKAG------DDFMKVHFIERFTQPGEAISLYRNGNFVD--F 217

Query: 694 CGGTHVSSTGEI 705
           C G HV ST  I
Sbjct: 218 CRGPHVPSTNRI 229


>gi|73951033|ref|XP_857231.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 4
           [Canis familiaris]
          Length = 798

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 34/160 (21%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPI 627
           +LT D     Q    HS+ H+L  A+    G H+     C  P   +G  +D+    + +
Sbjct: 217 LLTFD-NEEAQAVYWHSSAHILGEAMELYYGGHL-----CYGPPIENGFYYDMFIEDRAV 270

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDG 686
           +S EL ++E+    II +  P        E    S    L   KYN  + R++     + 
Sbjct: 271 SSTELSALENICKTIIKEKQPF-------ERLEISKEVLLEMFKYNKFKCRIL-----NE 318

Query: 687 GVHSSA-----------LCGGTHVSSTGEIMLLYIVSESS 715
            VH+S            LC G HV  TG+I  + I   SS
Sbjct: 319 KVHTSTTTVYRCGPLIDLCKGPHVRHTGKIKAIKIFKNSS 358


>gi|327481051|gb|AEA84361.1| threonyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVID-EGFYYDIAIDRPFTPEDMAAIEKRMAELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++  V+ ++  R + I    +   G  Y  R+       + + + Y +  V    +C G 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTSR--GEDYKLRLVDDMPDEQAMGLYYHEEYVD---MCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|73951037|ref|XP_536172.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 1
           [Canis familiaris]
          Length = 802

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 34/160 (21%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPI 627
           +LT D +   Q    HS+ H+L  A+    G H+     C  P   +G  +D+    + +
Sbjct: 220 LLTFDNE-EAQAVYWHSSAHILGEAMELYYGGHL-----CYGPPIENGFYYDMFIEDRAV 273

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDG 686
           +S EL ++E+    II +  P        E    S    L   KYN  + R+++ +    
Sbjct: 274 SSTELSALENICKTIIKEKQPF-------ERLEISKEVLLEMFKYNKFKCRILNEK---- 322

Query: 687 GVHSSA-----------LCGGTHVSSTGEIMLLYIVSESS 715
            VH+S            LC G HV  TG+I  + I   SS
Sbjct: 323 -VHTSTTTVYRCGPLIDLCKGPHVRHTGKIKAIKIFKNSS 361


>gi|71903081|ref|YP_279884.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123734122|sp|Q48US7|SYT_STRPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71802176|gb|AAX71529.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNAEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|146282712|ref|YP_001172865.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166225484|sp|A4VM22|SYT_PSEU5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145570917|gb|ABP80023.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 640

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVID-EGFYYDIAIDRPFTPEDMAAIEKRMAELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV-------RVVSVEYEDGGVHSSALCGGT 697
           ++  V+ ++  R + I    +   G  Y  R+       + + + Y +  V    +C G 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTSR--GEDYKLRLVDDMPDEQAMGLYYHEEYVD---MCRGP 184

Query: 698 HVSST 702
           HV +T
Sbjct: 185 HVPNT 189


>gi|21909901|ref|NP_664169.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896400|ref|NP_802750.1| threonyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|25453285|sp|Q8K8C0|SYT_STRP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21904088|gb|AAM78972.1| putative threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811651|dbj|BAC64583.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes SSI-1]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNTEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|73951029|ref|XP_857141.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 2
           [Canis familiaris]
          Length = 799

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 34/160 (21%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPI 627
           +LT D     Q    HS+ H+L  A+    G H+     C  P   +G  +D+    + +
Sbjct: 217 LLTFD-NEEAQAVYWHSSAHILGEAMELYYGGHL-----CYGPPIENGFYYDMFIEDRAV 270

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDG 686
           +S EL ++E+    II +  P        E    S    L   KYN  + R+++ +    
Sbjct: 271 SSTELSALENICKTIIKEKQPF-------ERLEISKEVLLEMFKYNKFKCRILNEK---- 319

Query: 687 GVHSSA-----------LCGGTHVSSTGEIMLLYIVSESS 715
            VH+S            LC G HV  TG+I  + I   SS
Sbjct: 320 -VHTSTTTVYRCGPLIDLCKGPHVRHTGKIKAIKIFKNSS 358


>gi|224476774|ref|YP_002634380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783537|sp|B9DNC9|SYT_STACT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222421381|emb|CAL28195.1| threonyl-tRNA synthetase 1 [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D      I+S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVID-GGFYYDFDTDVKISSDDFPEIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N  +  ++++RE+A            Y  ++ ++    ED  V        + LC G H
Sbjct: 132 ENYKIERKVVSREEA----KEFFKDDPY--KLELIDAIPEDESVTLYSQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTSKIKEFKLLS 199


>gi|94993836|ref|YP_601934.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|123080137|sp|Q1J7X1|SYT_STRPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94547344|gb|ABF37390.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNAEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|50913800|ref|YP_059772.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|68052904|sp|Q5XDC4|SYT_STRP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50902874|gb|AAT86589.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNAEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|283456070|ref|YP_003360634.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283102704|gb|ADB09810.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 677

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  I        G  I  DG  +D    +P T  +LK IE  +  II 
Sbjct: 69  MRHSATHVMAQAVQEIRPDAKLGVGPVIK-DGFYYDFDVVEPFTPEDLKDIEKRMQRIIK 127

Query: 645 QNLPVVTRIMNREDAIASGA------------AALLGTKYNDRVRVVSVEY-----EDGG 687
            +     R+++ ++A+A  A             A L  +    +    + +      DG 
Sbjct: 128 SSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDPEAATEISEKELSFYDNIDRDGN 187

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLA 746
           V    LC G H+ +T  I    I  E S  A  R  EA    QR         E LK+  
Sbjct: 188 VVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGNEANPMLQRIYGAAFATKEDLKAYQ 245

Query: 747 SFLK 750
           + L+
Sbjct: 246 TRLE 249


>gi|209558991|ref|YP_002285463.1| threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065119|sp|B5XKA6|SYT_STRPZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209540192|gb|ACI60768.1| Threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNAEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|268591418|ref|ZP_06125639.1| alanyl-tRNA synthetase-related protein [Providencia rettgeri DSM
           1131]
 gi|291313070|gb|EFE53523.1| alanyl-tRNA synthetase-related protein [Providencia rettgeri DSM
           1131]
          Length = 220

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 38/208 (18%)

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           F+ + GGQ  DT       +R     ++K++ G+ V + I E      E ++V  +D + 
Sbjct: 38  FHPQGGGQPMDTAWVNDIPVR-----IKKQSGGLIVGY-IPEGVTFSQENNVVARVDKEK 91

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK----PITSAELKSI 635
           R++ +  H+A HLL+  L       ++Q G    PD  R + +  +    P    + + I
Sbjct: 92  RQRYAALHTAGHLLNWELRRF--GWLAQKGHHF-PDESRVEFSMMEGDVTPFDELDSQYI 148

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED VN                  +I SG +  +  K + R+  +    E         CG
Sbjct: 149 EDIVN-----------------QSIRSGRSVAIKQKDDLRISYIDQTEE-------MPCG 184

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           GTHVSS   I    I S    + G  RI
Sbjct: 185 GTHVSSLDNIQHFSIKS-MKFKKGTLRI 211


>gi|15674621|ref|NP_268795.1| threonyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910240|ref|YP_281790.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|22654136|sp|Q9A115|SYT_STRP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13621733|gb|AAK33516.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes M1 GAS]
 gi|71853022|gb|AAZ51045.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNAEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|19745635|ref|NP_606771.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|94988057|ref|YP_596158.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94991943|ref|YP_600042.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|139474254|ref|YP_001128970.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|306827837|ref|ZP_07461106.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|25453286|sp|Q8P234|SYT_STRP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123080426|sp|Q1JMY5|SYT_STRPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123382336|sp|Q1JD10|SYT_STRPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225506|sp|A2RFY5|SYT_STRPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19747765|gb|AAL97270.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes
           MGAS8232]
 gi|94541565|gb|ABF31614.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94545451|gb|ABF35498.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|134272501|emb|CAM30764.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|304429946|gb|EFM32986.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNAEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|228475159|ref|ZP_04059885.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270770|gb|EEK12172.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 645

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  I G      G  I   G  +D    + ++S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRIYGDVKFGVGPVIE-GGFYYDFDMDEKVSSDDFEKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N  +  ++++R++A            Y  ++ ++    ED  V        + LC G H
Sbjct: 132 ENYKIERKVVSRKEA----KDFFKDDPY--KLELIDAIPEDENVTLYTQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTSKIKEFKLLS 199


>gi|167945769|ref|ZP_02532843.1| Threonyl-tRNA synthetase, class IIa [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 165

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D    +P T  +LK IE  +++I+ 
Sbjct: 85  MRHDAAHVMAQAVQELYPGTQVTIGPAIE-NGFYYDFAREEPFTPDDLKKIEQRMHEIVK 143

Query: 645 QNLPVVTRIMNREDAI 660
           ++LP+   + +R +AI
Sbjct: 144 RDLPLQREVWDRAEAI 159


>gi|119872544|ref|YP_930551.1| threonyl/alanyl tRNA synthetase, SAD [Pyrobaculum islandicum DSM
           4184]
 gi|119673952|gb|ABL88208.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum islandicum DSM 4184]
          Length = 238

 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 19/219 (8%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T F+   GG   D+G  I    +       K  E   VH  I++R        +
Sbjct: 27  EVILDKTAFHDGTGGLQADSGFIIYRSEKYSTVASHKGGE--VVH--ILDRAPAFKPGDV 82

Query: 572 VLTI-DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           V  I D++ R +    H+A H+L   L     + ++  G  ITP+  R D      + + 
Sbjct: 83  VTGILDWEKRYRKMRLHTAAHILSAVLYKRYNALIT--GGDITPEYARDDFNIEGDMATV 140

Query: 631 ELKSIEDNV---NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYE 684
             K+ E+ V   N+I  + + V    + RE+A+       L  K      ++R+V +   
Sbjct: 141 R-KAFEEAVAEANEIAQRGIEVKIYWLPREEALKIPGVVKLAEKMPPDIPQLRIVEIP-- 197

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             GV   A  GG HV +T EI  + I+   +   G +R+
Sbjct: 198 --GVDLQA-DGGPHVRNTREIGTIKILKVENRGKGKKRL 233


>gi|309800860|ref|ZP_07694992.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|308222396|gb|EFO78676.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 677

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  I        G  I  DG  +D    +P T  +LK IE  +  II 
Sbjct: 69  MRHSATHVMAQAVQEIRPDAKLGVGPVIK-DGFYYDFDVVEPFTPEDLKDIEKRMQRIIK 127

Query: 645 QNLPVVTRIMNREDAIASGA------------AALLGTKYNDRVRVVSVEY-----EDGG 687
            +     R+++ ++A+A  A             A L  +    +    + +      DG 
Sbjct: 128 SSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDPEAATEISEKELSFYDNVDRDGN 187

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLA 746
           V    LC G H+ +T  I    I  E S  A  R  EA    QR         E LK+  
Sbjct: 188 VVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGNEANPMLQRIYGAAFATKEDLKAYQ 245

Query: 747 SFLK 750
           + L+
Sbjct: 246 TRLE 249


>gi|171742906|ref|ZP_02918713.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
 gi|171278520|gb|EDT46181.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
          Length = 708

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  I        G  I  DG  +D    +P T  +LK IE  +  II 
Sbjct: 100 MRHSATHVMAQAVQEIRPDAKLGVGPVIK-DGFYYDFDVVEPFTPEDLKDIEKRMQRIIK 158

Query: 645 QNLPVVTRIMNREDAIASGA------------AALLGTKYNDRVRVVSVEY-----EDGG 687
            +     R+++ ++A+A  A             A L  +    +    + +      DG 
Sbjct: 159 SSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDPEAATEISEKELSFYDNIDRDGN 218

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLA 746
           V    LC G H+ +T  I    I  E S  A  R  EA    QR         E LK+  
Sbjct: 219 VVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGNEANPMLQRIYGAAFATKEDLKAYQ 276

Query: 747 SFLK 750
           + L+
Sbjct: 277 TRLE 280


>gi|312864463|ref|ZP_07724694.1| threonine--tRNA ligase [Streptococcus downei F0415]
 gi|311099590|gb|EFQ57803.1| threonine--tRNA ligase [Streptococcus downei F0415]
          Length = 651

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D  + +  I++ +L  IE+ +  I+
Sbjct: 71  LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNGAGQISNEDLPKIEEEMKKIV 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEYEDGG---VHSSA----LC 694
            +N P +     RE+     A  +     ND  ++ ++    ED G   ++       LC
Sbjct: 130 KENFPSI-----REEVTKDQAREIFK---NDPYKLELIEEHSEDAGGLTIYRQGEYVDLC 181

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 182 RGPHVPSTGRIQVFHLLN 199


>gi|306822719|ref|ZP_07456097.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|304554264|gb|EFM42173.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
          Length = 708

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 21/184 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  I        G  I  DG  +D    +P T  +LK IE  +  II 
Sbjct: 100 MRHSATHVMAQAVQEIRPDAKLGVGPVIK-DGFYYDFDVVEPFTPEDLKDIEKRMQRIIK 158

Query: 645 QNLPVVTRIMNREDAIASGA------------AALLGTKYNDRVRVVSVEY-----EDGG 687
            +     R+++ ++A+A  A             A L  +    +    + +      DG 
Sbjct: 159 SSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDPEAATEISEKELSFYDNVDRDGN 218

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLA 746
           V    LC G H+ +T  I    I  E S  A  R  EA    QR         E LK+  
Sbjct: 219 VVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGNEANPMLQRIYGAAFATKEDLKAYQ 276

Query: 747 SFLK 750
           + L+
Sbjct: 277 TRLE 280


>gi|326201674|ref|ZP_08191545.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988274|gb|EGD49099.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 635

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 6/144 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  R L   H+A+H+L  A+  +        G  I   G  +D    KP +  E
Sbjct: 59  LLTFDDEGGR-LVYRHTASHVLAQAVKRLYPDVKLAIGPAID-SGYYYDFEREKPFSIDE 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYEDGGV 688
           L+SIE  +  II ++L +    + R +AI      A +       D      + +   G 
Sbjct: 117 LESIEKEMEKIIKEDLKLERFSLPRNEAIKFMEEKAESYKVELIKDLPEGEEISFYKQGD 176

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
            +  LC G H+S T ++  + ++S
Sbjct: 177 FTD-LCAGPHLSGTVKLKAIKLLS 199


>gi|94989937|ref|YP_598037.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|123258050|sp|Q1JI30|SYT_STRPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94543445|gb|ABF33493.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++  ++ + HSA HL   A   +  +     G  I  +G  +D  +++  I++ 
Sbjct: 59  IVTPDHKDAYEV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNAEGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPCIEAEMQKIVTENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|327463110|gb|EGF09431.1| threonine--tRNA ligase [Streptococcus sanguinis SK1]
          Length = 647

 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 25/165 (15%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           AI E G +      ++T D+++   + + HSA HL   A   +        G  I  DG 
Sbjct: 50  AITEDGSIE-----IVTPDHEDALDI-LRHSAAHLFAQAARRLFPDIHLGVGPAIQ-DGF 102

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +D    +  I++ +L  IE+ +  I+ +N P +     RE+     A  +     ND  
Sbjct: 103 YYDTDNEAGQISNEDLPLIEEEMKKIVKENFPSI-----REEVSKDEAREIFK---NDPY 154

Query: 677 RVVSVEY---EDGGV------HSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +E    ++GG+          LC G HV STG I + ++++
Sbjct: 155 KLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLN 199


>gi|148284343|ref|YP_001248433.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166225471|sp|A5CD12|SYT_ORITB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146739782|emb|CAM79649.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 648

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           I+ T     +TID     ++ + H   H+L  A+  +        G  I  DG  +D   
Sbjct: 51  IINTATVKAITIDSVQGIEI-LRHDTAHILAQAVKKLFPDTQVVIGPVIK-DGFYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
            KP T+ +L+ IE  + DIIA+N  +   +  R  AI
Sbjct: 109 DKPFTNKDLEVIEQEMQDIIAKNDLIQREVWLRAKAI 145


>gi|307545104|ref|YP_003897583.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307217128|emb|CBV42398.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 632

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   + IT  +L++IE  +  +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPDAKMAIGPVIE-DGFYYDIDFGRSITPEDLEAIEARMKSLIE 129

Query: 645 QNLPVVTRIMNREDAI 660
               VV   ++R+ A+
Sbjct: 130 TGYDVVREYVDRDRAM 145


>gi|281411969|ref|YP_003346048.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373072|gb|ADA66634.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 640

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDG---LRFDVTHSKPITSAELKSIEDNVNDII 643
           H+  H+L  A+  I G    + G   T +      FD+ + K +T  +L  IE  +  II
Sbjct: 71  HTMAHILAQAVMRIYGKENVKLGIGPTIENGFYYDFDIKNGK-LTEEDLPKIEQEMKKII 129

Query: 644 AQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +NLP+  + +++E+A            L+     DRV +    Y  G      LC G H
Sbjct: 130 KENLPIERKEISKEEARKLFNNQPYKLELIEEIEGDRVTI----YRQGEF--VDLCRGPH 183

Query: 699 VSSTGEIMLLYIVSES-SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           + STG +    ++S S +   G  +   +T  R       + E L +   FL+ +Q
Sbjct: 184 LPSTGVVKHFKLLSVSGAYWRGSEKNPMLT--RVYGTAFAKKEDLDNYLKFLEEAQ 237


>gi|314933837|ref|ZP_07841202.1| threonine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653987|gb|EFS17744.1| threonine--tRNA ligase [Staphylococcus caprae C87]
          Length = 645

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G  V      +   G  +D    + ++S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGD-VKFGVGPVVEGGFYYDFDMDEKVSSDDFEKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N  +  ++++R++A            Y  ++ ++    ED  V        + LC G H
Sbjct: 132 ENYKIERKVVSRDEA----KEFFKDDPY--KLELIDAIPEDESVTLYSQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTSKIKEFKLLS 199


>gi|254576931|ref|XP_002494452.1| ZYRO0A01782p [Zygosaccharomyces rouxii]
 gi|238937341|emb|CAR25519.1| ZYRO0A01782p [Zygosaccharomyces rouxii]
          Length = 445

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 71/367 (19%), Positives = 151/367 (41%), Gaps = 50/367 (13%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K  V    T  + E GGQ  D+G       R+ ++ V +   G+   H + +   +    
Sbjct: 46  KYLVELHDTILFPEGGGQPSDSGYLKCSNDRIPVSYVSRV--GLHAKHHVGQ--YIDPGT 101

Query: 570 SLVLTIDYQNRRQLSINHSATHLLH----------HALSTILGSHVSQNGSCITPDGLRF 619
           ++ + +D   R      H+  HLL             LS  +G  +S     +  +    
Sbjct: 102 TVEVEVDQSKRVDYMQQHTGQHLLSAILESEPYKLDTLSWSMGGVISAKKPTLEINDYFN 161

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +   + +TS E++ +   VN++I+ N   ++ I    +A      + +   Y D  + V
Sbjct: 162 YIELPRKLTSQEIEQVSHKVNELISINPQQISVIERTPEAHGDVQTSKIPDDY-DLEKGV 220

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                 G + S+  C GTH+  T +I  +L   ++++IR    R+  + G R  ++ M  
Sbjct: 221 LRTIHIGEIDSNPCC-GTHLQRTNQIGSILISPNQTNIRGSNSRLYFMCGNRVVNYGMAV 279

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH-AKRKLQLNVEDLSCHK----IAD 793
           ++ + +  S L   +  +  +++      R+  LI  + ++ Q  +++L+ ++    +A 
Sbjct: 280 NKLVGTAKSSLSCLESEIPEKID------RQRDLIQKSSKREQFWIKELASYESDRLLAK 333

Query: 794 VN----------------FMSHIISEVDSK------ELKSVMDALQKKIQSGIIMLVGIS 831
           V                 F+  +  E  +K      E + V+   +K  +SG +++V  S
Sbjct: 334 VKEAGKAFLLKDEYGTLEFLLQVFKEFTNKLGKTPNEYQLVLCGREKSTESGSVLIVSES 393

Query: 832 KEKKASV 838
            EK +++
Sbjct: 394 GEKISTI 400


>gi|148269334|ref|YP_001243794.1| threonyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166225512|sp|A5IJ45|SYT_THEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147734878|gb|ABQ46218.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermotoga
           petrophila RKU-1]
          Length = 640

 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDG---LRFDVTHSKPITSAELKSIEDNVNDII 643
           H+  H+L  A+  I G    + G   T +      FD+ + K +T  +L  IE  +  II
Sbjct: 71  HTMAHILAQAVMRIYGKENVKLGIGPTIENGFYYDFDIKNGK-LTEEDLPKIEQEMKKII 129

Query: 644 AQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +NLP+  + +++E+A            L+     DRV +    Y  G      LC G H
Sbjct: 130 KENLPIERKEISKEEARKLFNNQPYKLELIEEIEGDRVTI----YRQGEF--VDLCRGPH 183

Query: 699 VSSTGEIMLLYIVSES-SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           + STG +    ++S S +   G  +   +T  R       + E L +   FL+ +Q
Sbjct: 184 LPSTGVVKHFKLLSVSGAYWRGSEKNPMLT--RVYGTAFAKKEDLDNYLKFLEEAQ 237


>gi|269836488|ref|YP_003318716.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785751|gb|ACZ37894.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 596

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 14/145 (9%)

Query: 568 EMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           EM L + ++ Q   +L+ + HSA H++  A+  +        G  I  +G  +D    + 
Sbjct: 7   EMDLQVDVENQEELELARMRHSAAHVMAQAVLEMFPGAKLAIGPAIE-NGFYYDFDLPRS 65

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T  +L  IE+ + +I     P   R ++RE+A+       L      ++ ++    ED 
Sbjct: 66  LTPDDLGKIEERMREIKQGAYPFERREVSREEALK------LFADQPYKIEIIQDLPEDA 119

Query: 687 GVHS------SALCGGTHVSSTGEI 705
            + +      + LC G HV +T +I
Sbjct: 120 VISTYTQDSFTDLCRGPHVDNTSQI 144


>gi|291456785|ref|ZP_06596175.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291382062|gb|EFE89580.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 677

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 21/184 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  +  +     G  I  DG  +D    KP T  +LK IE  +  II 
Sbjct: 69  MRHSATHVMAQAVQEVYPNAKLGVGPVIK-DGFYYDFQVDKPFTPEDLKDIEKRMQRIIK 127

Query: 645 QNLPVVTRIMNREDAIASGA------------AALLGTKYNDRVRVVSVEY-----EDGG 687
            +     R +  E+A+   A             A L       +    + +      DG 
Sbjct: 128 SSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDPAAATEISEKELSFYDNVDRDGN 187

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA-ITGQRARSHLMGQDEKLKSLA 746
           V    LC G H+ +T  I    I  E S  A  R  E   T QR         E LK+  
Sbjct: 188 VVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEKNPTMQRIYGTAWANKEDLKAYQ 245

Query: 747 SFLK 750
           + L+
Sbjct: 246 TRLE 249


>gi|92111808|gb|ABE73648.1| threonyl-tRNA synthetase [Streptococcus salivarius]
          Length = 165

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  DG  +D    +  I++ +L  IE+ +  I+
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIE-DGFYYDTDNEAGQISNEDLSRIEEEMKKIV 62

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGV------HSSALC 694
            +N P +     RE+     A  +     ND  ++  +E    ++GG+          LC
Sbjct: 63  KENFPSI-----REEVTKDEAREIFK---NDPYKLELIEEHSEDEGGLTIYRQGEYVDLC 114

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HV STG I + ++++
Sbjct: 115 RGPHVPSTGRIQVFHLLN 132


>gi|119358269|ref|YP_912913.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355618|gb|ABL66489.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 675

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 27/174 (15%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D    +++   HS++HL+  A+  +        G  I   G  +D+         +
Sbjct: 83  ILTFDSPEGKEI-FWHSSSHLMAQAIEELFAGTRFGAGPAIE-QGFYYDIASDHRFREED 140

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L++IE  + +I  +   +  R M+RE+AI         T  ND  +V  +E         
Sbjct: 141 LRAIELRMIEISKRESQINRREMSREEAI-----EFFKTVRNDPYKVEILEDTLKNTPVV 195

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT 727
             YE      + LC G H+ ST +I  + + + S       S R  ++RI  IT
Sbjct: 196 SLYEQENF--TDLCSGPHLHSTSKIKAVQLTNISTSYWRGDSSRESMQRIYGIT 247


>gi|328543265|ref|YP_004303374.1| Threonyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
 gi|326413011|gb|ADZ70074.1| Threonyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 654

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSIN 586
           G TG  I +GI   +    KKA  + +   + +    I R     ++T D     +L I 
Sbjct: 17  GITGAEIAEGISKSLA---KKAVAMALDGELKDLADPIARDARIEIVTRDDPRALEL-IR 72

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H A H++  A+  +        G  I  +G  +D    +P T  +L  IE  + +IIA+ 
Sbjct: 73  HDAAHVMAEAVQELWPGTQVTIGPVIE-NGFYYDFKRDEPFTPEDLPVIEKKMREIIARG 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTHVS 700
                 + +RE+A        L      +V +V    ED  +          LC G H++
Sbjct: 132 AAFTKEVWSREEA----KRHFLTKGETYKVELVDAIPEDQELKIYKQGTWLDLCRGPHMT 187

Query: 701 STGEI 705
           ST +I
Sbjct: 188 STRQI 192


>gi|118381467|ref|XP_001023894.1| hypothetical protein TTHERM_00473110 [Tetrahymena thermophila]
 gi|89305661|gb|EAS03649.1| hypothetical protein TTHERM_00473110 [Tetrahymena thermophila
           SB210]
          Length = 253

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 17/203 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           + ++F++T F+ + GGQ  D G    +G ++ +  +    E   + H + ++  ++    
Sbjct: 36  LNILFEKTIFHPQGGGQPSDNGFIEVNGEQIPVKKLIYIREQELIFHQVEKKDCIKENQE 95

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + ID   RRQ  + HS  HL+  A++  LG            DG   + T +K    +
Sbjct: 96  VRMQIDENFRRQNVLLHSGGHLIDVAVNR-LGYEWEAGKGYHFIDGPYVEYTVNKWEEGS 154

Query: 631 ELKSIEDNVNDIIAQNL-------PVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSV 681
           + K ++D +N  + + L       P + +I   ++A    S     L    N  +R V +
Sbjct: 155 QEK-LKDQINQELEKILTEGSPENPSICKIYEYDEAKKEISNFPTYLPEGIN--IRWVKL 211

Query: 682 EYEDGGVHSSALCGGTHVSSTGE 704
              D G      CGGTHV +  +
Sbjct: 212 NKLDPGCP----CGGTHVKNVSD 230


>gi|327398325|ref|YP_004339194.1| hypothetical protein Hipma_0156 [Hippea maritima DSM 10411]
 gi|327180954|gb|AEA33135.1| hypothetical protein Hipma_0156 [Hippea maritima DSM 10411]
          Length = 248

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 27/162 (16%)

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTL------DRGLVLLDGVLSHLGKDEILNGDVA 387
           GS  P+ I  K L E+   S + + G +L      DR      G LSHL  D + +G + 
Sbjct: 62  GSLAPDFIVGKSLSEKDKHSHNWKIGFSLLKNAQNDREKAFAYGYLSHLAADSVAHGIMV 121

Query: 388 FKLYDTHGLPLDIMQDILCARG---LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
            ++ +   L ++ + D LC +    LA   I  +N +L+ Q  R             + +
Sbjct: 122 KEMSNIKHLYIENLADSLCEKSYKELATKVINRYNASLDVQFKR-----------KVDTV 170

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDR---KVLCQKPPID 483
            FS    +G ++FI   +++ S F    R   KVL  K  I+
Sbjct: 171 LFS----FGVSKFIFKSIVKASAFSSGKRGFQKVLLNKKFIE 208


>gi|268678723|ref|YP_003303154.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616754|gb|ACZ11119.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 605

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D   ++ I  A+LK IE  + ++  
Sbjct: 43  IRHSCAHLMAQAIKALYKDAQFFVGPVIE-DGFYYDFRVNEKIGDADLKEIEKKMAELAN 101

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH------SSALCGGTH 698
             LP+       E    + A AL    ++D  + V +   DG V          LC G H
Sbjct: 102 AKLPI-------EKIYTTKAEALKHFAHDDLKQEVMLRIPDGEVSIYKQGDFEDLCRGPH 154

Query: 699 VSSTGEIMLLYIV 711
           V +T  +    ++
Sbjct: 155 VPNTKYLRFFKLI 167


>gi|225851210|ref|YP_002731444.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645886|gb|ACO04072.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 646

 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDV-THSKPITSAELKSIEDNVNDI 642
           + HS  H++  AL  + G      G    T +G  +DV    K +T  +L  IE+ + +I
Sbjct: 73  LRHSFAHIMAQALKELYGDKNVHLGIGPTTENGFYYDVEIEGKRLTEEDLPVIEEKMREI 132

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTH 698
           I +N  +  + + R++A+          K  D ++    E E   V+       LC G H
Sbjct: 133 IERNCEIERKELPRDEALKLFEEKREIYKI-DIIKHQIPEGEPISVYQQCDFIDLCRGPH 191

Query: 699 VSSTGEIMLLYIVS 712
           + STGE  +  +VS
Sbjct: 192 LLSTGEAGVFKLVS 205


>gi|302687664|ref|XP_003033512.1| hypothetical protein SCHCODRAFT_234457 [Schizophyllum commune H4-8]
 gi|300107206|gb|EFI98609.1| hypothetical protein SCHCODRAFT_234457 [Schizophyllum commune H4-8]
          Length = 491

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 35/289 (12%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ----KKAEGIFVH 556
           +  E  +G  + V+   T  + E GGQ  DTG      IR+   D +    K+  G  +H
Sbjct: 75  LAPELPTGPILGVLLHDTVIFPEGGGQPTDTGS-----IRVGDKDWEVVQCKRDGGHAIH 129

Query: 557 HAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           +  V  G               + ++ D++ R      H++ HLL   L T L       
Sbjct: 130 YVRVPEGTSVDDALATFAPGTPVKVSFDWERRYDHMTLHTSQHLLSALLETRLQLPTLSW 189

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                P     +V  S  +T  E+ SI++  N ++ +   V   +   E  +    +   
Sbjct: 190 SLTSYPQPCYVEVPRS--MTQEEIASIQNEANRLVFEGRQVHVEVQEMESKMEGDGSRAF 247

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSAL--------CGGTHVSSTGEIMLLYIVSESSIRAGI 720
           G       R +  +Y  GGVH   +        C GTH+ S   + L  +    ++    
Sbjct: 248 G-------RGLPSDYT-GGVHRVIVIDGVDRNPCCGTHLPSLHNLQLFLLPHTDALSRST 299

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
            R+  + G R  +HL     +L + AS L      V  RV  + E+ ++
Sbjct: 300 TRLYFLAGPRLIAHLAAAHAQLTAAASTLTCGLPEVPARVALVVEDRKR 348


>gi|295396075|ref|ZP_06806258.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971016|gb|EFG46908.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 667

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 31/154 (20%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  IT DG  +D    +P T  +LK+IE     I+ 
Sbjct: 66  LRHSCAHVVAQAVQELYPGSKLGIGPYIT-DGFYYDFQVEEPFTPEDLKAIEKKAQRIVK 124

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +       +++ ++AI                   A GA+  +G    T Y +R R   V
Sbjct: 125 EGQTFHRVVVDEDEAIRREANEPFKLELIQDKGKGAEGASVEVGGSELTVYENRNRKGEV 184

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++D       LC G H+ ST  I   + V+ +S
Sbjct: 185 VWQD-------LCRGPHLPSTKLIGNGFAVTRAS 211


>gi|330995755|ref|ZP_08319652.1| threonine/alanine tRNA ligase second additional domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574485|gb|EGG56050.1| threonine/alanine tRNA ligase second additional domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 160

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ++  N+ +    H+  H+L+  +  + G   S N   I     + +   +   T  ++
Sbjct: 7   VALNAHNKLEYPPMHTCEHILNQTMVRMFGCERSGNAH-IERKKSKINYDLADEPTEEQV 65

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             I   VN++IA +LPV    ++R+    +     L     D +R+V V     G +   
Sbjct: 66  AEIARKVNEVIAADLPVTYAYVSRDAVPDNVPLDKLPDAAEDTLRLVRV-----GDYDVC 120

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            C G HV  T +I   +I S +S + G  RI
Sbjct: 121 ACIGAHVEHTAQIGRFHINS-TSYKDGQFRI 150


>gi|167752344|ref|ZP_02424471.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
 gi|167660585|gb|EDS04715.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
          Length = 651

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 14/133 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++HLL  AL  +        G  I  +G  +DV    PIT A+L++IE  + ++    
Sbjct: 73  HTSSHLLAEALEALYPGIKFGIGPAIE-NGFYYDVDSPVPITEADLETIEKKMIELSRNK 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVH------SSALCGGTHV 699
             ++   +++ DA+ +       T+  D  +V  + + EDG +        + LC G H+
Sbjct: 132 EQLIRTEVSKADALKN------FTEKGDPYKVELIRDLEDGTISFYTNGAFTDLCRGPHL 185

Query: 700 SSTGEIMLLYIVS 712
            +TG I  + + S
Sbjct: 186 PNTGLIKAIKLTS 198


>gi|294790871|ref|ZP_06756029.1| threonine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458768|gb|EFG27121.1| threonine--tRNA ligase [Scardovia inopinata F0304]
          Length = 685

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 571 LVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            V +ID  ++  L+I  HSATH++  A+  I        G  I  DG  +D    KP T 
Sbjct: 56  FVESIDINSKDGLAIMRHSATHVMAQAVQEIYPQAKLGIGPVIE-DGFYYDFDVDKPFTP 114

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            ++K IE  +  II  +     RI+  + A
Sbjct: 115 EDMKEIEKRMQRIIKSSQSFRRRIVTEDQA 144


>gi|170721151|ref|YP_001748839.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
 gi|229558042|sp|B1J6U4|SYT_PSEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169759154|gb|ACA72470.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 640

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +  T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERSFTPEDLAAIEKRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKMTPRAEVIDVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 ST 702
           +T
Sbjct: 188 NT 189


>gi|157364839|ref|YP_001471606.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166987326|sp|A8F8Q8|SYT_THELT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157315443|gb|ABV34542.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 638

 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 21/140 (15%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITP---DGLRFD--VTHSKPITSAELKSIEDNVND 641
           H+ +H+L  A+  + G    + G  I P   +G  +D  + + K IT  +L  IE+ +  
Sbjct: 68  HTMSHILAQAVMNVYGKKNVRLG--IGPAIENGFYYDFEILNGK-ITEEDLSRIEEEMKK 124

Query: 642 IIAQNLPVVTRIMNREDAIA-------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           II QN+PV    M+++DAI+            LL    +++V +    ++ G      LC
Sbjct: 125 IIEQNIPVERIEMSKDDAISFMTEKDQPYKVELLKEIQDNKVTL----FKQGDF--VDLC 178

Query: 695 GGTHVSSTGEIMLLYIVSES 714
            G H+ STG +    ++S S
Sbjct: 179 RGPHMPSTGMVKHFKLLSVS 198


>gi|289550561|ref|YP_003471465.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315658055|ref|ZP_07910928.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180093|gb|ADC87338.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315496945|gb|EFU85267.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 645

 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ +AL  + G+     G  I   G  +D      I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMANALKRLYGNVQFGVGPVIE-GGFYYDFDMENKISSDDFEKIEKMMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSS 701
           +N  +  ++++RE+A           +  D +    +V++ Y  G    + LC G HV S
Sbjct: 132 ENHKIERKVVSREEAKEFFKDDPYKLELIDAIPQDEMVTL-YSQGDF--TDLCRGVHVPS 188

Query: 702 TGEIMLLYIVS 712
           T +I    ++S
Sbjct: 189 TAKIKEFKLLS 199


>gi|44662851|gb|AAS47507.1| threonyl tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 149

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)

Query: 587 HSATHLLHHA---LSTILGSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDNVN 640
           H+  H+L  A   L T  G    +    I P   +G  +D+   +PI   +L  IE+ + 
Sbjct: 4   HTLAHVLAQAVRELYTERGYRPEEVKLAIGPVIENGFYYDMDVPEPIRGEDLPIIEEKMR 63

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-------- 692
            I+A NLP+   ++ RE+A+   A       Y   +     E E+   ++          
Sbjct: 64  RIVAANLPLKRFVLPREEALKRYAGI---DPYKTELIQDLPESEELSFYAQGDDTYGFTD 120

Query: 693 LCGGTHVSSTGEI 705
           LC G HV STG I
Sbjct: 121 LCRGPHVPSTGRI 133


>gi|167585939|ref|ZP_02378327.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ubonensis Bu]
          Length = 165

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 18/157 (11%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V  ID+  R +    H+A HL+   L   +      +G  +T D +R D   ++PI   
Sbjct: 18  VVAEIDWARRYRHMRLHTAAHLMCAVLPYPV------DGCSVTADYVRLDFATAEPI--- 68

Query: 631 ELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDG 686
           +   +E  + ++I    PV T  I + E A        +  K      RVR++ ++    
Sbjct: 69  DRDDVERRLAELIGGAHPVTTEWITDDEMAARPELVRTMSVKPPMGLGRVRLLRID---- 124

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           GV     CGGTHV +T EI  L +       A  RR+
Sbjct: 125 GVDLQP-CGGTHVRNTSEIGGLRVAKLEKKSARTRRV 160


>gi|241894947|ref|ZP_04782243.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871665|gb|EER75416.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
          Length = 699

 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITS 629
           ++T D +   QL + HS +HLL  AL+ +    +         +G  +D        I+ 
Sbjct: 101 LITKDDEEGLQL-LRHSVSHLLAQALNRLYPDQIHYGVGPFIANGFYYDTDKVEGNQISV 159

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
            +   IE  +  I+ +NLP+V+R ++R++A+
Sbjct: 160 DQFPEIEKMMKRIVKENLPIVSREISRDEAL 190


>gi|302871393|ref|YP_003840029.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574252|gb|ADL42043.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 639

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H+L  A+  + G  V          G  +D    + IT   L+ IE  +  II ++
Sbjct: 75  HTTSHILAQAVKRLFGDKVKLGIGPAIDKGFYYDFDVEESITIEILEKIEQEMQKIIKED 134

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-------LCGGTHV 699
           L +    ++RE+AI      +     N +V +++ +  +G + S         LC G H+
Sbjct: 135 LKIERFELSREEAIK----LMQQRGENYKVELIN-DIPEGEIISFYRQGEFVDLCTGPHL 189

Query: 700 SSTGEIMLLYIVS 712
            STG +    ++S
Sbjct: 190 PSTGRVKAFKLLS 202


>gi|170290551|ref|YP_001737367.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174631|gb|ACB07684.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 638

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 14/160 (8%)

Query: 564 ILRTEMSLVLTIDYQNRR-QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           ++  ++  +  +D+ +R  + +  H+ +H+L  A+  +        G  I  +G  ++  
Sbjct: 44  VISDDLGEIRVLDFNSREGREAYWHTTSHILAQAVKRLFKEAKLGIGPPIE-EGFYYEFD 102

Query: 623 -HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----- 676
              K  +  +L+ IE+ +  I+ +++ +V   M RE+AIA    A  G  Y   +     
Sbjct: 103 LGGKTFSQEDLELIEEEMRRIVEEDIEIVREEMRREEAIALFREA--GEPYKVELLEEIE 160

Query: 677 -RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             VVS+ Y  G      LC G H+ STG +  + ++  SS
Sbjct: 161 EPVVSI-YRQGEFFD--LCRGPHLPSTGYVKYMKLLQVSS 197


>gi|254498486|ref|ZP_05111214.1| alanyl tRNA synthetase [Legionella drancourtii LLAP12]
 gi|254352302|gb|EET11109.1| alanyl tRNA synthetase [Legionella drancourtii LLAP12]
          Length = 230

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 31/227 (13%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           Q  +    VS     V+F++T  ++ +GGQ  D     G  +      +  K E   +++
Sbjct: 11  QSNLETRVVSVDNNYVLFEETIVFSFSGGQESDHAYVNGFPV------IDSKIEDNLIYY 64

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            + +   L+    + + ID+  R +L   H A  L+   ++  L   + + G+ I     
Sbjct: 65  VLQDEHNLKPGDVVTMKIDWPRRYRLMRLHFAAELILELVTQEL--KLEKIGAHIAEFKA 122

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R D    K I S   +S+  + + II Q+L            I +G + L      ++ R
Sbjct: 123 RIDFFCDKNI-SFLFESMLSDYHKIIQQDL-----------KIKTGFSDL-----QNQRR 165

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              +E       S   CGGTHV ST E+  +  +   +I  G  RIE
Sbjct: 166 FWEIE-----GFSKVACGGTHVKSTSEVGFI-TLKRVNIGGGKERIE 206


>gi|126731388|ref|ZP_01747195.1| Alanyl-transfer RNA synthetase domain protein [Sagittula stellata
           E-37]
 gi|126708299|gb|EBA07358.1| Alanyl-transfer RNA synthetase domain protein [Sagittula stellata
           E-37]
          Length = 238

 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 17/199 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV +   FY + GGQ GD+G    DG  L I    +   G  +        +      +V
Sbjct: 28  VVVEPALFYPKGGGQPGDSGWLEWDGRSLAIATTVRGEGGSSILVPAEPAPLPPLGAHVV 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D++ R +    H+A HL    LS ++   V+  G  I     R D    +P   ++ 
Sbjct: 88  QILDWELRHKYMRVHTALHL----LSVVIPLPVT--GGQIGAGTGRLDFLMPEP--PSDR 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGV 688
             IE  +  ++ ++L V    ++ ++  A        ++   +   R+R+V +     G 
Sbjct: 140 DGIEQALVHLVDRDLEVTDGWISEDELDARPELVKTMSVQPPRGAGRIRLVRI---GTGT 196

Query: 689 HSSAL--CGGTHVSSTGEI 705
               L  CGGTHV+ TGEI
Sbjct: 197 EQVDLQPCGGTHVARTGEI 215


>gi|148264672|ref|YP_001231378.1| threonyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398172|gb|ABQ26805.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Geobacter
           uraniireducens Rf4]
          Length = 645

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 20/138 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +HL+  A+ ++        G  I   G  +D     P T  +L+ IE  ++++  
Sbjct: 82  IRHSTSHLMAQAVKSLFPEAKVTIGPAIET-GFYYDFDVDHPFTPEDLEKIEKKMSELAK 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSA---------LC 694
            NL +  +++   DAI           + D   +  VE  ED    + +         LC
Sbjct: 141 ANLKIERQVLTGADAIKL---------FRDMGEIYKVELIEDLSADTVSLYRQGDFVDLC 191

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G H+ ST  I    + S
Sbjct: 192 RGPHLPSTSHIKAFKLTS 209


>gi|223044090|ref|ZP_03614129.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442484|gb|EEE48590.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 645

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G  V      +   G  +D    + ++S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGD-VKFGVGPVVEGGFYYDFDMDEKVSSDDFDKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +N  +  ++++R++A            Y  ++ ++    ED  V        + LC G H
Sbjct: 132 ENYKIERKVVSRDEA----KEFFKDDPY--KLELIDAIPEDESVTLYSQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVS 712
           V ST +I    ++S
Sbjct: 186 VPSTSKIKEFKLLS 199


>gi|37678955|ref|NP_933564.1| metal-dependent hydrolase [Vibrio vulnificus YJ016]
 gi|37197697|dbj|BAC93535.1| predicted metal-dependent hydrolase [Vibrio vulnificus YJ016]
          Length = 294

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 26/131 (19%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFY----------AEAGGQLGD------TGCAIG----D 537
           + +IV  +V+   + VV   TPF+          A+ G  + D       GC +G     
Sbjct: 18  ESDIVLTSVNEHSLYVVTQHTPFHPVSHIWPDHPADRGSLIADGKEWPIIGCWVGAVECS 77

Query: 538 GIRL---QITDVQKKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
             RL   Q   V++  EG   + VH    ERG L     + L++D + ++ LS  HSA H
Sbjct: 78  TGRLFVDQAIPVKRDTEGWSFVVVHEIEAERGQLSVGCKVRLSVDKEYQQSLSRGHSAGH 137

Query: 592 LLHHALSTILG 602
           L + AL+ +L 
Sbjct: 138 LAYLALNKVLA 148


>gi|91070150|gb|ABE11072.1| threonyl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           HF10-11A3]
          Length = 638

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  I  S +      +  DG  +D+      T  +L  IE+ +N +I 
Sbjct: 71  IRHSFAHLIGHAVKQIY-SDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINKLIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSA------LCG 695
            N  V    +++E+AI +        K  D   ++R++    E G ++         +C 
Sbjct: 130 TNYDVEILQVSKEEAIKT-------FKERDETFKLRIIEEIPEQGLINLYKHEEYIDMCR 182

Query: 696 GTHVSST 702
           G HV +T
Sbjct: 183 GPHVPNT 189


>gi|254167770|ref|ZP_04874620.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289597105|ref|YP_003483801.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
 gi|197623298|gb|EDY35863.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289534892|gb|ADD09239.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
          Length = 387

 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 29/249 (11%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+  E   G K   +   T  Y   GGQ  D G AI +G    I  +     G   H   
Sbjct: 13  EVEVEERKGNKC--LLSDTILYPGGGGQPPDEGIAICNGEEFSIKHI-----GSLWHEI- 64

Query: 560 VERGILRTE-MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
              GI + + M ++L  D   RR L +    +H   H     L +  ++ G      G  
Sbjct: 65  --DGICKCDKMKIILNWD---RRYLLMR---SHTAEHTFFRFLENKGAKMGKIAL--GEV 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVR 677
             +     I++ ++   E    ++I +   V T  +N+++        +   +  D ++R
Sbjct: 115 SSIIFQGDISAEDILDAEKRTRELIKEGRNVSTFWINKDEIRNYPDLRIKLERIKDEKIR 174

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLM 736
           VV +E      H  + C G H+S+  EI    IV     R G R+ ++ + G+ AR++  
Sbjct: 175 VVKIE-----GHDLSACKGVHISNLSEIEDFAIV---HFRMGKRKEVKFVIGEMARNYHY 226

Query: 737 GQDEKLKSL 745
              + L+ L
Sbjct: 227 RASQSLRKL 235


>gi|153955810|ref|YP_001396575.1| threonyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219856177|ref|YP_002473299.1| hypothetical protein CKR_2834 [Clostridium kluyveri NBRC 12016]
 gi|189083603|sp|A5N258|SYT_CLOK5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783517|sp|B9E5W0|SYT_CLOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146348668|gb|EDK35204.1| ThrS [Clostridium kluyveri DSM 555]
 gi|219569901|dbj|BAH07885.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 540 RLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           +L I+ + KKA G  V   +VE    I +     +LT + +  +++ + H+A+H+L  A+
Sbjct: 26  KLSIS-LSKKALGAVVDGKVVELNYKINKDCKVEILTFEDEEGKKI-LRHTASHILAQAI 83

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +        G  I   G  +DV      T   L+ IE  +N+II +N+ +    + RE
Sbjct: 84  KRLYPEVKLAIGPAID-SGFYYDVDAEFSFTPELLEKIEGKMNEIIKENIKLERFELPRE 142

Query: 658 DAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIML 707
           +AI          + N+  +V  ++          Y+ G      LC G HV STG    
Sbjct: 143 EAIK------FMEEKNEPYKVELIKDLPEDSIISFYKQGDF--VDLCAGPHVPSTGRAKA 194

Query: 708 LYIVS 712
           + ++S
Sbjct: 195 VKLLS 199


>gi|110834994|ref|YP_693853.1| threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110648105|emb|CAL17581.1| Threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 638

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  +G  +D     P T  +LK+IE  + +I+ 
Sbjct: 72  IRHDAAHVMAQAVQELFPDTQVTIGPTIA-NGFYYDFHRDIPFTPDDLKTIEKRMLEIVR 130

Query: 645 QNLPVVTRIMNREDAIA 661
           +N  +   I +R++A+A
Sbjct: 131 RNEEIRREIWDRDEAVA 147


>gi|229161333|ref|ZP_04289318.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228622147|gb|EEK78988.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 639

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 22/143 (15%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID     +++  HSA H+L  A+  + G+ V+     +  +G  +D+     +   +
Sbjct: 63  IVTIDSNEGVEIA-RHSAAHILAQAVKRMYGN-VNLGVGPVIENGFYYDMDLPSSVNVED 120

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-----------VS 680
           L  IE  +  II++N+ +    ++RE+A      A L  + ND +++           V+
Sbjct: 121 LPKIEKEMKKIISENINIERVEVSREEA------AKLFQEMNDGLKLELLEAIPNEESVT 174

Query: 681 VEYEDGGVHSSALCGGTHVSSTG 703
           +  +D  V    LC G H+ STG
Sbjct: 175 LYKQDEFVD---LCRGPHLPSTG 194


>gi|213692035|ref|YP_002322621.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254783509|sp|B7GR13|SYT_BIFLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213523496|gb|ACJ52243.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458147|dbj|BAJ68768.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 677

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  +  +     G  I  DG  +D    KP T  +LK IE  +  II 
Sbjct: 69  MRHSATHVMAQAVQEVYPNAKLGVGPVIK-DGFYYDFQVDKPFTPEDLKDIEKRIQRIIK 127

Query: 645 QNLPVVTRIMNREDAIASGA 664
            +     R +  E+A+   A
Sbjct: 128 SSQSFRRRSVTEEEALKEEA 147


>gi|297562207|ref|YP_003681181.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846655|gb|ADH68675.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 657

 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID +  R + + HS  H+L  A+  +        G  +  +G  +D   ++P T A+L
Sbjct: 60  IAIDSEEGRAI-LRHSTAHVLAQAVQELFPEAKLGIGPPVE-NGFYYDFDVAEPFTPADL 117

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           KSIE  +  I+ Q      R+++ E+A A
Sbjct: 118 KSIEKKMQQIVKQGQRFDRRVVSDEEARA 146


>gi|328770064|gb|EGF80106.1| hypothetical protein BATDEDRAFT_36953 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 328

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 117/310 (37%), Gaps = 46/310 (14%)

Query: 502 VEEAVSG---------QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA-E 551
           VE +VSG         +  EVV   T  +   GGQ  D G   G    + I D ++   +
Sbjct: 35  VESSVSGSTDAVHSKPKMFEVVLADTVIFPTGGGQPNDLGKING----IPIVDARRVGLD 90

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + + +  VE+     +  + + +D+  R      HSA HLL         S ++Q    
Sbjct: 91  CVHILNNPVEK-----DQVVQVDLDWDRRFDHMQQHSAQHLL---------SAIAQKEFD 136

Query: 612 ITPDGLRFDVTHSKPITSAE-----LKSIEDNVNDIIAQNLPV--VTRIMNREDAIASGA 664
           +   G            +AE     L ++E  VN  I + + V  V   MN  D      
Sbjct: 137 MKTVGWSLGKAVCYIEVTAEPKQHVLDALEQQVNAYIRKRIAVSVVEHDMNEHDMPKKLP 196

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           + L G      VR ++ +  D        C GTHV ++ +I    ++    +R G  R+ 
Sbjct: 197 SDLDGAV----VRCITFDGLDNNT-----CCGTHVENSADIQCCKLLHTERVRGGNTRVF 247

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            + G R          + + L   L     N V RVE + +  +  +LI   +K    + 
Sbjct: 248 FVAGNRVFQSYQSTFLRNRKLTDLLSTGPENFVERVEGLKKNIK--ELIKTNKKQSKEIA 305

Query: 785 DLSCHKIADV 794
            L   K+ D+
Sbjct: 306 ALEKLKLGDL 315


>gi|222152709|ref|YP_002561885.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783540|sp|B9DU13|SYT_STRU0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222113521|emb|CAR41303.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 648

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDII 643
           + HSA HL   A   +        G  I  +G  +D  +S   I++ +L  IE  +  I+
Sbjct: 71  LRHSAAHLFAQAAKRLFPDIHLGVGPAIA-EGFYYDTDNSSGQISNEDLPRIEAEMQKIV 129

Query: 644 AQNLPVVTRIMNREDAIA----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            +N P +   + +E+A+           L  +++D    +++ Y  G      LC G HV
Sbjct: 130 KENYPCIREEVTKEEALEIFKDDPYKIELINEHSDDAAGLTI-YRQGEF--VDLCRGPHV 186

Query: 700 SSTGEIMLLYIVS 712
            STG I + ++++
Sbjct: 187 PSTGRIQVFHLLN 199


>gi|220931402|ref|YP_002508310.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992712|gb|ACL69315.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 646

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID +    +   H+  H+L  A+  +  +     G  I  +G  +D    +  + ++
Sbjct: 61  IVTIDSEEGLDI-YRHTTAHILAQAVKRLYKNVKLGIGPTIE-NGFYYDFDVEESFSPSD 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--- 688
           L+ IE  +  II ++LP+   +++R++A+        G  Y  +V ++  E ED  V   
Sbjct: 119 LEKIEKEMEKIIKEDLPIKKEMVSRDEALKLMKEK--GEIY--KVELIE-ELEDDYVSLY 173

Query: 689 HSSA---LCGGTHVSSTGEI 705
           H      LC G H+ STG++
Sbjct: 174 HQGEFIDLCRGPHLPSTGKV 193


>gi|156049927|ref|XP_001590925.1| hypothetical protein SS1G_07549 [Sclerotinia sclerotiorum 1980]
 gi|154691951|gb|EDN91689.1| hypothetical protein SS1G_07549 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 269

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 20/198 (10%)

Query: 518 TPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA--EGIFVHHAIVERGI-LRTEMSLVL 573
           T F+ + GGQ  D G    + GI+  +  V+  A  +G  +H               +  
Sbjct: 54  TIFHPQGGGQPSDEGTMENEEGIKFTVQMVRMSAITDGEVLHFGTFSAPTSFSPSQQITQ 113

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVS---QNGSCITPDGLRFDVTHSKPITSA 630
            ID + R   S  H+A H+L  A+  ++ S V    +  +   P     +   +  I S 
Sbjct: 114 KIDQEKRLLYSRYHTAGHVLGAAVRHLVSSSVPNFDETKASHFPSSAACEF--AGLIEST 171

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL------LGTKYNDRVRVVSVEYE 684
               I+  +++ I  ++PV     +  D IA+G   L      +G    ++ RVV +   
Sbjct: 172 WKTPIQQKLDEYIEADMPVEIDWWDEADFIANGMERLIPDRVAMGMTKEEKFRVVKIVGA 231

Query: 685 DGGVHSSALCGGTHVSST 702
           +     +  CGGTHV ST
Sbjct: 232 E-----TYPCGGTHVDST 244


>gi|218677881|ref|ZP_03525778.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 340

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T  +L  IE  + +IIA+N P   +I +RE A    AA   G +Y   +     E +D 
Sbjct: 1   FTPDDLPKIEKKMKEIIARNAPFTKQIWSREKAKDVFAAK--GEQYKVELVDAIPEGQDL 58

Query: 687 GVHSSA----LCGGTHVSSTGEI 705
            +++      LC G H++STG++
Sbjct: 59  KIYNQGEWFDLCRGPHMASTGQV 81


>gi|255027300|ref|ZP_05299286.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 181

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  I-LRHSTAHLMAQALKRLYPDVKFGVGPAIE-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           + +N+P+   +++RE+AI    A  +G +Y 
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYK 155


>gi|189183871|ref|YP_001937656.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|238692247|sp|B3CSS5|SYT_ORITI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189180642|dbj|BAG40422.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 648

 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           I+ T     +TID     ++ + H   H+L  A+  +        G  I  DG  +D   
Sbjct: 51  IINTATVKAITIDSVQGIEI-LRHDTAHILAQAVKKLFPDTQVVIGPVIK-DGFYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
            KP TS +L+ IE  + DII +N  +   +  R  AI
Sbjct: 109 DKPFTSKDLEIIEQEMQDIITKNDLIQREVWLRAKAI 145


>gi|304309881|ref|YP_003809479.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301795614|emb|CBL43813.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 647

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D   +   T  +L+ IE  + +I+ 
Sbjct: 82  LRHDAAHVMAQAVKELYPETQVTIGPAIE-NGYYYDFCRATSFTPEDLEKIEARMMEIVD 140

Query: 645 QNLPVVTRIMNREDAIA--------SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           ++ P+V  + +R +AIA          A  +     N+ + +    Y  G      LC G
Sbjct: 141 RDTPIVREVWDRNEAIAFFEKQGELFKAEIIRDLPENETITL----YRQGEFID--LCRG 194

Query: 697 THVSSTGEI 705
            H+ STG++
Sbjct: 195 PHLPSTGKL 203


>gi|300856610|ref|YP_003781594.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300436725|gb|ADK16492.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT + ++ +++ + H+ +H+L  A+  +        G  I  DG  +D+      T   
Sbjct: 59  ILTFEDEDGKKI-LRHTGSHILAQAVKRLYPEVKLAIGPSID-DGFYYDMDADFSFTPEL 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--------- 682
           L+ IE  +N II +N  +    + R++A+       L  + N+  +V  ++         
Sbjct: 117 LEKIEGEMNKIIKENEKLERFELTRDEAVK------LMEEKNEPYKVQLIKDLPEDEIIS 170

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            Y+ G      LC G HV STG++ ++ ++S
Sbjct: 171 FYKQGDF--VDLCAGPHVPSTGKVKVVKLLS 199


>gi|308177541|ref|YP_003916947.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307745004|emb|CBT75976.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 671

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 21/151 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  IT DG  FD     P T  +LK +E  +  II 
Sbjct: 68  LRHSTAHVMAQAVQQLRPDSKLGIGPYIT-DGFYFDFDVEDPFTPEDLKQLEKMMQKIIN 126

Query: 645 QNLPVVTRIMNREDAIA--------------------SGAAALLGTKYNDRVRVVSVEYE 684
           QN   V R ++ E+A A                    SG    +     +     +V+ +
Sbjct: 127 QNQLFVRREVSPEEAKAEMANEPYKCELLAKADSADTSGEGVTVEVAAGETTIYDNVDRK 186

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            G      LC G H+ +T  I   Y ++ S+
Sbjct: 187 SGETVWKDLCRGPHLPNTKLIKNAYALTRSA 217


>gi|219520186|gb|AAI43944.1| TARSL2 protein [Homo sapiens]
          Length = 766

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 20/153 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPI 627
           +LT D     Q    HS+ H+L  A+    G H+     C  P   +G  +D+    + +
Sbjct: 220 LLTFD-NEEAQAVYWHSSAHILGEAMELYYGGHL-----CYGPPIENGFYYDMFIEDRAV 273

Query: 628 TSAELKSIEDNVNDIIAQNLP-----VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           +S EL ++E+    II +  P     V   I+            +L  K N     V   
Sbjct: 274 SSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVNTATTTV--- 330

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 331 YRCGPLID--LCKGPHVRHTGKIKTIKIFKNSS 361


>gi|206577644|ref|YP_002237642.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
 gi|206566702|gb|ACI08478.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
          Length = 245

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-----RLQITDVQKKAEGIFVHHAIVERG--ILR 566
           V  QT FY + GGQLGD G  +   +     ++ +   ++K E I  +  I E G  +L+
Sbjct: 40  VLSQTIFYPQGGGQLGDRGYLVLPNMLTSQQKMGVITTKRKDEEIRHYLDINEIGFDLLK 99

Query: 567 TEMSLVLT--IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
            +    +T  +D+  R      HSA HL+H  L  + G  +        P  +R  +   
Sbjct: 100 KQAGQQVTAILDWDLRYHQMRIHSAVHLIHCILEQVTGHSI--------PYPVRSPLNDE 151

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 +L    D   DI+ +    +    +   AI +      G  +  R+      ++
Sbjct: 152 SGENHYQLLDYID--EDILEKATTELNEFCSSGHAIQTVNVPEQGNNF--RI------WK 201

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            G    S  CGGTHV  T EI +++  S   I+  + RI
Sbjct: 202 CG--RWSIPCGGTHVKDTKEIGMIF--STLKIKKNMTRI 236


>gi|149911664|ref|ZP_01900273.1| phosphoglucomutase [Moritella sp. PE36]
 gi|149805245|gb|EDM65261.1| phosphoglucomutase [Moritella sp. PE36]
          Length = 545

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 580 RRQLSINHSATHLLHHALSTILG-SHVSQNGSCITPD-------GLRFDVTHSKPITSAE 631
           R Q    ++ T ++ HA+ T    S +  +G  ITP        G++++  H  P     
Sbjct: 110 RVQADDGYTPTPVISHAILTHNSQSEIQADGIVITPSHNPPQDGGIKYNPPHGGPADGDV 169

Query: 632 LKSIEDNVNDIIAQNLPVVTRI 653
            K IE+  NDIIAQ L  V RI
Sbjct: 170 TKIIENRANDIIAQGLTAVKRI 191


>gi|118602649|ref|YP_903864.1| threonyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225495|sp|A1AWT6|SYT_RUTMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118567588|gb|ABL02393.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 632

 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +++T+ +L +     ++    I HS  HLL  A   +        G  I  +G  +D  +
Sbjct: 50  LIKTDANLAIITANDDKGLEIIRHSTAHLLAQATQMLYPKAQVTIGPVID-NGFYYDFVY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
               + ++L  IE N++ ++ QNL +    M+R +AI
Sbjct: 109 KDGFSESDLAKIEKNMHKLVKQNLKIERFEMSRNEAI 145


>gi|154249412|ref|YP_001410237.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154153348|gb|ABS60580.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 638

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDG---LRFDVTHSKPITSAELKSIEDNVNDII 643
           H+ +H++  A+  I G+   + G   T +      FD+ + K IT  +L  IE+ +  II
Sbjct: 72  HTMSHIMAQAVMRIYGAENVKLGIGPTIENGFYYDFDIANVK-ITEEDLPKIEEEMKKII 130

Query: 644 AQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            ++LP+    + +++AI        +   +  + +    V +   G     LC G H+ S
Sbjct: 131 KEDLPIERLELPKKEAIELMESKGQMYKIELINEIPDEKVSFYKQGEFID-LCRGPHLPS 189

Query: 702 TGEIMLLYIVSES 714
           TG++  L ++S S
Sbjct: 190 TGKVKHLKLLSVS 202


>gi|163940157|ref|YP_001645041.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163862354|gb|ABY43413.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 639

 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA H+L  A+  I G  V+     +  +G  +D+     +   +L  IE  + +II +N
Sbjct: 77  HSAAHILAQAVKRIYGD-VNLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMKNIINEN 135

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCGGTH 698
           + +    ++RE+A        L  + ND +++  +E    G   +         LC G H
Sbjct: 136 VKIERVEVSREEAKE------LFQEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPH 189

Query: 699 VSSTG 703
           + STG
Sbjct: 190 LPSTG 194


>gi|229133217|ref|ZP_04262049.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228650236|gb|EEL06239.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 639

 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA H+L  A+  I G  V+     +  +G  +D+     +   +L  IE  + +II +N
Sbjct: 77  HSAAHILAQAVKRIYGD-VNLGVGPVIENGFYYDMDLQSSVNVEDLPKIEKEMKNIINEN 135

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCGGTH 698
           + +    ++RE+A        L  + ND +++  +E    G   +         LC G H
Sbjct: 136 VKIERVEVSREEAKE------LFQEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPH 189

Query: 699 VSSTG 703
           + STG
Sbjct: 190 LPSTG 194


>gi|229167201|ref|ZP_04294942.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228616239|gb|EEK73323.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 639

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA H+L  A+  I G  V+     +  +G  +D+     +   +L  IE  + +II +N
Sbjct: 77  HSAAHILAQAVKRIYGD-VNLGVGPVIENGFYYDMDLQSSVNVEDLPKIEKEMKNIINEN 135

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCGGTH 698
           + +    ++RE+A        L  + ND +++  +E    G   +         LC G H
Sbjct: 136 VKIERVEVSREEAKE------LFQEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPH 189

Query: 699 VSSTG 703
           + STG
Sbjct: 190 LPSTG 194


>gi|312143811|ref|YP_003995257.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904462|gb|ADQ14903.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 652

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 15/139 (10%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID +   ++ I H+A+H++  A+  +  +     G  I  DG  +D    +      
Sbjct: 61  IITIDSEEGLEV-IRHTASHVMAQAVKRLYDNVQVAIGPDIE-DGFYYDFDLEESFNQES 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS- 690
           L+ IE  +  II +++ V  + + RE+AIA      L  + N+  ++  +   D  + S 
Sbjct: 119 LEEIEAEMQKIIDEDIEVRRKELPREEAIA------LMEERNEDYKIELINGLDDEMISL 172

Query: 691 ------SALCGGTHVSSTG 703
                   LC G H+ STG
Sbjct: 173 YFQGDFVDLCRGPHLPSTG 191


>gi|255728569|ref|XP_002549210.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240133526|gb|EER33082.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 439

 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 108/241 (44%), Gaps = 23/241 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEM 569
           V F  T  + E GGQ  D G    + +   +++  V + K + + +   ++E G   TE+
Sbjct: 58  VEFQDTILFPEGGGQPYDKGTITILPENKVIEVKSVLRDKLKAVHLVDEMIEPG---TEV 114

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +L   +D+  R  +   H+  HLL    S +  +   +  S    + + + +   + I  
Sbjct: 115 TL--NVDWARRIDIMQQHTGQHLL----SAVFDTFGLETLSWSMGEEINY-IELPEKIND 167

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDG 686
             L  +++ VN +I + + +   ++  +        + L   Y+     +R+V +     
Sbjct: 168 ELLGEVQERVNQLIVEGIKIT--VVTPDQHGHEVDVSHLPDDYDLSKGIIRIVKI----- 220

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   +  C GTH++ST +I  + ++ ++ IR G  R+    G R  + L  + E L+++A
Sbjct: 221 GELDANPCCGTHLTSTSQIQSIALLHQAPIRGGHSRLFFTCGARVANVLRKEHEILRNVA 280

Query: 747 S 747
           +
Sbjct: 281 T 281


>gi|119505276|ref|ZP_01627351.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119458967|gb|EAW40067.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 639

 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  +  +G  +D       T  +L+ IE  + ++ +
Sbjct: 71  IRHSTAHLLAQAVQQLFPGTQVTIGPTVE-NGFYYDFATGHNFTPEDLERIEKRMEELAS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            +LPV   + +RE AI       +G  +  ++     E E+  ++       LC G HV 
Sbjct: 130 ADLPVERVVYSREQAI--DLFRNMGEHFKVQIIEDLPEGEEISIYKQGEWMDLCRGPHVP 187

Query: 701 STGEI 705
           +T +I
Sbjct: 188 TTSKI 192


>gi|229011636|ref|ZP_04168819.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228749594|gb|EEL99436.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 639

 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA H+L  A+  I G  V+     +  +G  +D+     +   +L  IE  + +II +N
Sbjct: 77  HSAAHILAQAVKRIYGD-VNLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMKNIINEN 135

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCGGTH 698
           + +    ++RE+      A  L  + ND +++  +E    G   +         LC G H
Sbjct: 136 VKIERVEVSREE------AKELFQEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPH 189

Query: 699 VSSTG 703
           + STG
Sbjct: 190 LPSTG 194


>gi|254456038|ref|ZP_05069467.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083040|gb|EDZ60466.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 638

 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H   H+L  A+  +        G  I  +G  +D    +  T  +L  IE+ + +I+
Sbjct: 70  TIRHDTAHILAMAVQELFPGTQVTIGPVIE-NGFYYDFARKESFTEDDLIKIENKMKEIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHV 699
            ++      +  R  AIA       G  Y   +     E ED  ++       LC G H+
Sbjct: 129 DRDEITKREVWERNKAIAHFKKK--GEVYKAELIEAIPENEDVSIYFHGDWHDLCRGPHL 186

Query: 700 SSTGEI 705
           SSTG+I
Sbjct: 187 SSTGKI 192


>gi|320157269|ref|YP_004189648.1| putative metal-dependent hydrolase [Vibrio vulnificus MO6-24/O]
 gi|319932581|gb|ADV87445.1| predicted metal-dependent hydrolase [Vibrio vulnificus MO6-24/O]
          Length = 294

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           G  +G   C+ G     Q   V++  EG   + VH    ERG L     + L++D + ++
Sbjct: 68  GCWVGAVECSTGRLFVDQAIPVKRDTEGWSFVVVHEIEAERGQLSVGSKVRLSVDKEYQQ 127

Query: 582 QLSINHSATHLLHHALSTILG 602
            LS  HSA HL + AL+ +L 
Sbjct: 128 SLSRGHSAGHLAYLALNKVLA 148


>gi|251781963|ref|YP_002996265.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390592|dbj|BAH81051.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126789|gb|ADX24086.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 647

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 20/150 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSA 630
           ++T D+++   + + HSA HL   A   +  +     G  I  +G  +D  ++   I++ 
Sbjct: 59  IVTPDHEDAYDV-LRHSAAHLFAQAAKRLFPNLHLGVGPAIA-EGFYYDTDNADGQISNE 116

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+ +N P +   + +E+A+           + D    V +  E  G   
Sbjct: 117 DLPRIEAEMQKIVKENYPCIREEVTKEEALEL---------FKDDPYKVELINEHAGAGL 167

Query: 691 SA--------LCGGTHVSSTGEIMLLYIVS 712
           +         LC G HV STG I + ++++
Sbjct: 168 TVYRQGEFVDLCRGPHVPSTGRIQVFHLLN 197


>gi|27363890|ref|NP_759418.1| putative metal-dependent hydrolase [Vibrio vulnificus CMCP6]
 gi|27360007|gb|AAO08945.1| Predicted metal-dependent hydrolase [Vibrio vulnificus CMCP6]
          Length = 294

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           G  +G   C+ G     Q   V++  EG   + VH    ERG L     + L++D + ++
Sbjct: 68  GCWVGAVECSTGRLFVDQAIPVKRDTEGWSFVVVHEIEAERGQLSVGSKVRLSVDKEYQQ 127

Query: 582 QLSINHSATHLLHHALSTILG 602
            LS  HSA HL + AL+ +L 
Sbjct: 128 SLSRGHSAGHLAYLALNKVLA 148


>gi|18976800|ref|NP_578157.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
 gi|18892395|gb|AAL80552.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
          Length = 149

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 16/127 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           H+A H+L  A+  +LG       S  +  +  R  V  ++  T  E++ IE   N+ I +
Sbjct: 7   HTALHVLKGAVVKVLGEGAKWTASVYVNGNHGRLTVKFNRKPTHEEIREIERLANEKIKE 66

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYND------RVRVVSVEY-EDGGVHSSALCGGTH 698
           N+P+    ++RE+     A  + G +  D       VR + V   ED  V++   C   H
Sbjct: 67  NVPIQIYELSREE-----AEKIFGDEMYDLFPVPEHVRTLKVVVIEDWNVNA---CNKEH 118

Query: 699 VSSTGEI 705
             +TGEI
Sbjct: 119 TKTTGEI 125


>gi|329113775|ref|ZP_08242547.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696901|gb|EGE48570.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 640

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+S +        G   T  G  +D    +  T  +L  IE  +++I+ 
Sbjct: 69  IRHDTAHVLAQAVSELFPGTALATGPA-TEQGFFYDFAAERAFTDDDLVRIEARMHEIVD 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVE-----YEDGGVHSSALCGGTH 698
           ++ P++     R+ A+A       G  Y  + +R +  +     Y  G      LC G H
Sbjct: 128 RDEPIIREEWKRKSALAWCQEN--GQPYKAEIIRSLPADAVLSFYRQGNF--VDLCRGPH 183

Query: 699 VSSTGEI 705
           + STG+I
Sbjct: 184 LGSTGQI 190


>gi|225710766|gb|ACO11229.1| Alanyl-tRNA synthetase domain-containing protein 1-B [Caligus
           rogercresseyi]
          Length = 414

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 36/303 (11%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFVHHAIVERGI 564
           + + +EV    T  + E GGQ  DTG       R+    V K  +  G  VH+  +E   
Sbjct: 23  TNEYLEVELQDTILFPEGGGQNHDTG-------RIDAYRVAKVLRDGGKAVHYVDLEAS- 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH-----VSQNGSCITPDGLRF 619
           L  +  + L +D+  R      H+  HLL   L + LG       +++N     P     
Sbjct: 75  LELDQPVCLLLDWNRRFDNMQQHTGQHLLSALLQSKLGLKTNSWWMAENSESEGPGISYI 134

Query: 620 DVTH-------SKPITSAELKSIEDNVNDIIAQNLPVVT---RIMNREDAIASGAAALLG 669
           ++         S  +T AE  SIE + N +I    PV     R+ + E   A        
Sbjct: 135 ELLQEGGKNKGSFGLTDAE--SIEKDANQMIRDGRPVTVSAHRVGDSELERAYSRGLPED 192

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRAGIRRIEAITG 728
             ++  +R+V +      +    +C GTHVS+   + ++ I   + + +A    +  + G
Sbjct: 193 LPHDALIRIVDI------IGDRNMCCGTHVSNLSHLQMIKITQVQKTKKANEYLLYFVVG 246

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +R    L    ++   L   LK    +    VE+     +  + I++    +L V  L  
Sbjct: 247 ERVIRLLSSCLDRETKLTGLLKNRPLDHCSLVEKALSTSKNAKKINSNLLKELAV--LEA 304

Query: 789 HKI 791
           HKI
Sbjct: 305 HKI 307


>gi|70983967|ref|XP_747509.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66845135|gb|EAL85471.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
 gi|159123513|gb|EDP48632.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 273

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 22/207 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTE 568
           ++ +QT F+ + GGQ  D G    A G    +    +    EG  +H     +  ++ +E
Sbjct: 51  IITEQTIFHPQGGGQPSDEGTMTSASGGAFTVAAVRMDAVREGQVLHFGRFNQSSVVFSE 110

Query: 569 MSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVS---QNGSCITPDGLRFDVTHS 624
              V  TID + R   S  H+A H+L  A+  +L   V    +  +   PD    +   +
Sbjct: 111 GDTVEQTIDAEKRLLYSRLHTAGHVLGAAVRHLLEKEVEGFDELKASHFPDAAACEFQGA 170

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRV 678
             I       I+  VN+ I   LPV     + E+    G   LL  +        ++ RV
Sbjct: 171 --IDGKWKDPIQAKVNEFIEAKLPVEVDWWDEEEFRRRGLERLLPDRGAVAVAPGEKFRV 228

Query: 679 VSV----EYEDGGVH--SSALCGGTHV 699
           V++     Y  GG H  ++ LCG T V
Sbjct: 229 VNIVGAEVYPCGGTHVETTDLCGSTTV 255


>gi|38570111|ref|NP_689547.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Homo sapiens]
 gi|189083596|sp|A2RTX5|SYTC2_HUMAN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|119622721|gb|EAX02316.1| threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|124376838|gb|AAI32672.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|187953219|gb|AAI36316.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
          Length = 802

 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 20/153 (13%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPI 627
           +LT D     Q    HS+ H+L  A+    G H+     C  P   +G  +D+    + +
Sbjct: 220 LLTFD-NEEAQAVYWHSSAHILGEAMELYYGGHL-----CYGPPIENGFYYDMFIEDRAV 273

Query: 628 TSAELKSIEDNVNDIIAQNLP-----VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           +S EL ++E+    II +  P     V   I+            +L  K N     V   
Sbjct: 274 SSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVNTATTTV--- 330

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 331 YRCGPLID--LCKGPHVRHTGKIKTIKIFKNSS 361


>gi|229589378|ref|YP_002871497.1| hypothetical protein PFLU1862 [Pseudomonas fluorescens SBW25]
 gi|229361244|emb|CAY48108.1| hypothetical protein PFLU_1862 [Pseudomonas fluorescens SBW25]
          Length = 208

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 38/209 (18%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+   T F+ + GGQ  DTG  +G+   L++T    +     VH+  V+R +   E+  V
Sbjct: 30  VILQSTIFHPQGGGQPFDTGW-LGESSVLRVTQEADRV----VHY--VDRPL---ELGPV 79

Query: 573 LT-IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D Q R   S  HSA HL+ +   T+    +  +     P   +      +   + E
Sbjct: 80  TARVDEQRRALHSRLHSAGHLIGNVGETLGWMPIKAHH---WPGEGKITFIRGEAAQAME 136

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            ++I+  VN  IA + P   R MN ED                  R V       G   +
Sbjct: 137 AETIQQQVNQWIAADYP---RHMNLEDG----------------TRQVGF-----GELPA 172

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             CGGTHV + GE+  + I++ S  +  +
Sbjct: 173 YACGGTHVHTLGELGRVSILAMSEKKGAL 201


>gi|327402300|ref|YP_004343138.1| Ser-tRNA(Thr) hydrolase [Fluviicola taffensis DSM 16823]
 gi|327317808|gb|AEA42300.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Fluviicola
           taffensis DSM 16823]
          Length = 647

 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 23/199 (11%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRR 581
           EAG    D   +I +G+   +   +       V++ +++  I L  + +L L     +  
Sbjct: 15  EAGATALDVALSISEGLARNVLAAK-------VNNVVIDANIPLTNDCTLQLLTWNDSEG 67

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVN 640
           + ++ HS+ HL+  AL           G  I  +G  +DV    +P    +L+ IE  + 
Sbjct: 68  KSTMWHSSAHLMAEALEFYYPGIKLAIGPPIA-NGYYYDVDFMDQPFKEEDLEKIEQKMK 126

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGV------HSSAL 693
           ++     P V + +++ DA+A        T+  D  ++  ++   DG +      + + L
Sbjct: 127 ELAKLKNPYVRKEVSKADALA------YFTEKEDPYKLELIQDLPDGSITFYTQGNFTDL 180

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G H+  TG I  + ++S
Sbjct: 181 CRGPHIPDTGFIKAVKLMS 199


>gi|195039566|ref|XP_001990905.1| GH12380 [Drosophila grimshawi]
 gi|193900663|gb|EDV99529.1| GH12380 [Drosophila grimshawi]
          Length = 433

 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 99/244 (40%), Gaps = 21/244 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV + T  + E GGQ  D G   G  +R     V +K  G    H +          ++ 
Sbjct: 47  VVCEDTILFPEGGGQPCDYGTINGQPVR----SVLRK--GSTAVHFVESSSSFEEGATVQ 100

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC--ITPDGLRFDVTHSKPITSA 630
             +D+  R    ++H   H   H ++ +       + +   + P      ++    I+  
Sbjct: 101 QLVDWPRR----LDHMQQHSGQHLITALFDREFKYDTTSWSLGPSVSYIQLSTPHLISRE 156

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNRE---DAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
            L  IE   ND+I +   V   +++ E   D   + A   L   +    RVV +E    G
Sbjct: 157 SLDLIERQANDLIREGRIVSVLLVDPEMAQDFQDARAPRGLPKDHEGLARVVRIE----G 212

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           + S+ +C GTHV++  ++  + ++    +++ +  +  + G+R    L    ++ + L +
Sbjct: 213 IESN-MCCGTHVTNLSQLQCIKLIYAEKVKSNV-HVHFVVGERCLRKLGEIFQREQQLTA 270

Query: 748 FLKV 751
            LK 
Sbjct: 271 ALKC 274


>gi|240047776|ref|YP_002961164.1| threonyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239985348|emb|CAT05361.1| Threonyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 578

 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D+ N  + S+NHS +HLL  A+ T L   V       T +G  +D   S PI++ +L  
Sbjct: 1   MDFDNFDK-SLNHSTSHLLALAIKT-LYPDVKLGFGPSTKEGFYYDFEFSTPISNLDLPK 58

Query: 635 IEDNVNDIIAQNLPVV 650
           IE  +  +++ NL ++
Sbjct: 59  IEKLMKKLVSSNLQIL 74


>gi|149195433|ref|ZP_01872516.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134438|gb|EDM22931.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 613

 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D+  S PIT  +LK+IE  +     
Sbjct: 45  IRHSAAHLMAQAIKELYPDAKFYVGPTIE-NGFYYDLKTSTPITDKDLKNIEKKMKQFAK 103

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSST 702
           + + +    +++++AI       L  +    +   VVS+ Y+ G      LC G H+ +T
Sbjct: 104 KKIDITRYEISKDEAIEKFKDDELKQEVLKMIPSDVVSI-YKQGDFED--LCRGPHLPNT 160


>gi|315604309|ref|ZP_07879375.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314015|gb|EFU62066.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 677

 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 31/154 (20%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH+L  A+  +        G  IT DG  +D  +   +T   L+ +E  +  II 
Sbjct: 67  LRHSATHVLAQAVQDVFPDVNLGIGPFIT-DGFYYDFGNIDAVTPELLRELEKRMKRIIK 125

Query: 645 QNLPVVTRIMNREDAI-------------------ASGAAALLG----TKYNDRVRVVSV 681
           +    V R +  +DA                    A GA+  +G    T Y D VR    
Sbjct: 126 EGQRFVRREIGEDDARVELADQPYKLELVTTKGKGAEGASVEVGAGSLTMY-DNVR---- 180

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              DG V    LC G H+ ST  I   + +++SS
Sbjct: 181 --RDGTVAWKDLCRGPHLPSTNLIGNGFALTKSS 212


>gi|152975545|ref|YP_001375062.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024297|gb|ABS22067.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 19/127 (14%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A H+L  A+  I G+ V      +  +G  +D+  S  IT  +   IE  + +II +N
Sbjct: 77  HTAAHILAQAVKRIYGN-VKLGVGPVIENGFYYDLDLSSSITVEDFPIIEKEMKNIIHEN 135

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGG 696
           L +    ++RE      AA     + +D +++  +E          Y+ G      LC G
Sbjct: 136 LNIERIEISRE------AAEKFFKEADDHLKLELLEAIPEGEVITMYKQGEF--VDLCRG 187

Query: 697 THVSSTG 703
            H+ STG
Sbjct: 188 PHLPSTG 194


>gi|67903426|ref|XP_681969.1| hypothetical protein AN8700.2 [Aspergillus nidulans FGSC A4]
 gi|40741059|gb|EAA60249.1| hypothetical protein AN8700.2 [Aspergillus nidulans FGSC A4]
          Length = 862

 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 103/257 (40%), Gaps = 63/257 (24%)

Query: 513 VVFDQTPFYAEAGGQLGDTG-CAI-----------------------GDGIRLQITDVQK 548
           V   QT FY + GGQ  DTG  AI                        DGI  Q+  V+K
Sbjct: 616 VTTQQTVFYPQGGGQPSDTGIIAISLCLDSRMNAEASISEGPNANGEADGI-FQVLLVRK 674

Query: 549 KAEGIFVHHA------IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA---LST 599
            ++G  +H        ++++        + L ID   R   S  H+A H+L  A   LST
Sbjct: 675 TSDGKILHFGRFAKVPLIKQPYFTAHQPVTLHIDAAKRNYHSRLHTAGHVLGLAMRLLST 734

Query: 600 ILG-------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND--IIAQNLPVV 650
            LG       +H  +  +C+  +GL ++    KP+  A++  I D   D  I   +   V
Sbjct: 735 TLGERKKVKANHFPRE-ACLEFEGLLYN--EHKPLIQAKVDEITDMDLDVRISWWSEEEV 791

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS---TGEIML 707
            R  +  D +       +G     RVRV  +   D        CGGTHV S   TG I  
Sbjct: 792 ERRRDELDMVEGREVGGMG-----RVRVAEIGDLDANP-----CGGTHVVSTKRTGRI-- 839

Query: 708 LYIVSESSIRAGIRRIE 724
             ++ + S + GI R+ 
Sbjct: 840 --VIRKISRQKGISRVS 854


>gi|229017690|ref|ZP_04174581.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228743616|gb|EEL93725.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 639

 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA H+L  A+  I G+ V+     +  +G  +D+     +   +L  IE  +  II +N
Sbjct: 77  HSAAHILAQAVKRIYGN-VNLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMKKIINEN 135

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCGGTH 698
           + +    ++RE+      A  L  + ND +++  +E    G   +         LC G H
Sbjct: 136 VRIERVEVSREE------AKKLFKEMNDHLKLELLEAIPNGESVTLYKQGEFVDLCRGPH 189

Query: 699 VSSTG 703
           + STG
Sbjct: 190 LPSTG 194


>gi|257068556|ref|YP_003154811.1| threonyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559374|gb|ACU85221.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Brachybacterium
           faecium DSM 4810]
          Length = 666

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 21/148 (14%)

Query: 575 IDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D  +   LSI  HSA H+L  A+           G  IT DG  +D   ++P T   LK
Sbjct: 56  VDISSPDGLSILRHSAAHVLAQAVQKTNPEAKLGIGPPIT-DGFYYDFDVAEPFTPESLK 114

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYN--DRVRVVSVEYEDG 686
           ++E  ++ II      V R ++ + A A  A+      L+G K    D     SVE  +G
Sbjct: 115 ALEKEMHRIIKSGQRFVRREISDDAARAEEASEPYKLELIGLKSTAEDAAEGASVEVGEG 174

Query: 687 GVHS------------SALCGGTHVSST 702
           G+              + LC G H+ +T
Sbjct: 175 GLTMYDNVDKKGQTVWTDLCRGPHLPTT 202


>gi|189202146|ref|XP_001937409.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984508|gb|EDU49996.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 584

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 135/322 (41%), Gaps = 50/322 (15%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTI----LGSHVSQNGSCITPDGLRFDVTHS 624
           M +  T+D+  R  L   H+  HLL   +  +    LG  + Q G       + +     
Sbjct: 266 MPVRQTVDFARRWDLMQQHTGQHLLSAIMDGMDLPTLGWSMGQPGE------MNYVELPR 319

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVVSVE 682
           KP T  E++ I+ + N  I +++P+       E     G+ +L      ++  VR + + 
Sbjct: 320 KP-TDDEIQKIQKDCNAKIGESMPITV-----ETPEGKGSDSLPDDYDKEKGVVRFIKI- 372

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
              G +  +A CG TH+ ++  I ++ +    S+R    R+    G RA          L
Sbjct: 373 ---GDMDYNACCG-THLQNSAHISVILLHHTQSVRGTNCRLFFTAGDRAIRMATEAINGL 428

Query: 743 KSLASFLKVSQGNV-----VGRVEEIWEEYRK--------LQLIHAKR-KLQLNVEDLS- 787
           +++A  L  S         V R+ +   E RK        +     +R K QL  ++++ 
Sbjct: 429 RTIAVSLSSSSAPTDVAAGVQRMSDQVSESRKKEKKLLAEIASFEGERIKTQLQSQEVAF 488

Query: 788 CHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
            H+  D ++F++ +  EV         D ++++   G+++L     +   SVL+    +L
Sbjct: 489 SHRTTDGLDFINMVFFEVK--------DTVKER--DGVVVLCSGEVKTSGSVLVFGMPEL 538

Query: 847 LDRFNAVDLARLSAKVLGGGGG 868
           +++  A  +  + +   GGG G
Sbjct: 539 VEKMTA-KVKEVVSTAKGGGKG 559


>gi|326623540|gb|EGE29885.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 622

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQ-LWPHTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G  H      +C G HV
Sbjct: 110 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SS 701
            +
Sbjct: 168 PN 169


>gi|262275836|ref|ZP_06053645.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262219644|gb|EEY70960.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 642

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 8/124 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
              PV+ + ++ ++A  +  +   G  Y   +   +V  +D  G  H      +C G HV
Sbjct: 130 TKYPVIKKNVSWQEARDTFESR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTG 703
              G
Sbjct: 188 PHMG 191


>gi|260778279|ref|ZP_05887172.1| alanyl-tRNA synthetase domain protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606292|gb|EEX32577.1| alanyl-tRNA synthetase domain protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 213

 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 29/191 (15%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+T FYAE+GGQ  D G   G    +Q+   QK  +G  + + +      +    ++  
Sbjct: 29  LDKTIFYAESGGQESDEGTIAG----IQVECAQK--QGSEITYTLAAEPPFQVGDEVITV 82

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           I++  R  L   H A  ++   L T     + + G+ I  D  R D    + ++      
Sbjct: 83  INWTRRYALMKLHFAAEVILE-LFTQSYPDIEKIGAHIGQDKSRIDFVWPESLS------ 135

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
                        P++    N+  A+ +    L+ +++ D+         +G   +   C
Sbjct: 136 -------------PLLPEFENKAQALIN-KGQLIESQFEDKASERRFWRVEG--FAQVAC 179

Query: 695 GGTHVSSTGEI 705
           GGTH+  T E+
Sbjct: 180 GGTHLRRTSEV 190


>gi|225574947|ref|ZP_03783557.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037794|gb|EEG48040.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
          Length = 667

 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 63/308 (20%), Positives = 127/308 (41%), Gaps = 45/308 (14%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R +L  + +L +      +   ++ H+A+H+L  A+  +        G  I   G  +D 
Sbjct: 63  RTVLNKDCTLNILTANDEKGLAALRHTASHVLAEAVKRLYPHAKVAIGPSIDT-GFYYDF 121

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
              +P +  +L  IE  +  I+ +   +    M RE+AIA          + ++     V
Sbjct: 122 -ECEPFSQEDLDKIEQEMKKIVKEGAKIERYTMPREEAIAY---------FKEKEEPYKV 171

Query: 682 E-------------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-SIRAGIRRIEAIT 727
           E             Y  GG   + LC G H+ ST  +    ++S S +   G  + + +T
Sbjct: 172 ELIEDLPEDAEISFYSQGGF--TDLCAGPHLMSTKGVKAFKLLSSSGAYWRGDEKRQMLT 229

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEY----RKLQLIHAK---- 776
             R      G+ ++LK+    L+ ++    N +GR  E++       + L L+  K    
Sbjct: 230 --RVYGTAFGKKDELKAYLEQLEEAKKRDHNKLGREMELFTTVDVIGQGLPLLMPKGVII 287

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            ++LQ  +EDL  ++   +   + ++++ D  ++    D      + G+ +L    K+K+
Sbjct: 288 LKELQRWIEDLEDNEWGYIRTKTPLMAKSDLYKISGHWD----HYKDGMFVLGDEEKDKE 343

Query: 836 ASVLIVVT 843
              L  +T
Sbjct: 344 VYALRPMT 351


>gi|330913784|ref|XP_003296380.1| hypothetical protein PTT_06374 [Pyrenophora teres f. teres 0-1]
 gi|311331519|gb|EFQ95522.1| hypothetical protein PTT_06374 [Pyrenophora teres f. teres 0-1]
          Length = 446

 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 81/385 (21%), Positives = 154/385 (40%), Gaps = 77/385 (20%)

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL------ 573
            + E GGQ  D       G+   + D Q K E       I  R I R  +  +L      
Sbjct: 78  LFPEGGGQHTD------HGVLTTLKDEQSKEE-------IPIRSIQRHGLRCILFSPTPL 124

Query: 574 --------TIDYQNRRQLSINHSATHLLHHALSTI----LGSHVSQNGSCITPDGLRFDV 621
                   T+D+  R  L   H+  HLL   +  +    LG  + Q G       + +  
Sbjct: 125 SPGTPVRQTVDFARRWDLMQQHTGQHLLSAVMDGMDLPTLGWSMGQPGE------MNYVE 178

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVV 679
              KP +  E++ I+ + N  I +++P+       E     G+ +L      ++  VR +
Sbjct: 179 LPRKP-SDEEIEKIQKDCNAKIRESMPITV-----ETPEGKGSDSLPDDYDKEKGVVRFI 232

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +    G +  +A CG TH+ ++  I ++ +    S+R    R+    G RA        
Sbjct: 233 KI----GDMDYNACCG-THLQNSAHISVILLHHTQSVRGTNCRLFFTAGDRAIKMATEAI 287

Query: 740 EKLKSLASFLKVSQGNV-----VGRVEEIWEEYRK--------LQLIHAKR-KLQLNVED 785
             L+++A  L  S         V R+ +   E RK        +     +R K QL+ ++
Sbjct: 288 NGLRTIAVSLSSSSAPADVAAGVQRMGDQVSESRKKEKKLLAEIASFEGERIKTQLHSQE 347

Query: 786 LS-CHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           ++  H+  D ++F++ +  EV         D ++++   G+++L     +   S+L+   
Sbjct: 348 VAFSHRTTDGLDFINMVFFEVK--------DTVKER--GGVVLLCSGEVKTSGSILVFGR 397

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGG 868
            +L+++  A  +  + +   GGG G
Sbjct: 398 PELVEKM-AAKVKEVVSTAKGGGKG 421


>gi|163840754|ref|YP_001625159.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162954230|gb|ABY23745.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 700

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 34/157 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  +        G  IT DG  FD    +P T  +LK +E  +  I+ 
Sbjct: 89  LRHSAAHVMAQAVQQLSQDAKLGIGPYIT-DGFYFDFDVDEPFTPEDLKQLEKMMLKIVN 147

Query: 645 QNLPVVTRIMNREDAI----------------------ASGAAALLG----TKYNDRVRV 678
            N     R+++  +AI                      A GA+  +G    T Y +  R 
Sbjct: 148 ANQRFQRRVVSETEAIEAMKDEPYKLELIGLKGGSAEAAEGASQEVGAGELTIYANLDRD 207

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            +V ++D       LC G H+ +T  I   Y ++ SS
Sbjct: 208 ENVVWQD-------LCRGPHLPNTKLISNAYALTRSS 237


>gi|157413014|ref|YP_001483880.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166987324|sp|A8G3W3|SYT_PROM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157387589|gb|ABV50294.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 638

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  I  S +      +  DG  +D+      T  +L  IE+ +N +I 
Sbjct: 71  IRHSFAHLIGHAVKQIY-SDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINKLIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSA------LCG 695
            N  V    +++++AI +        K  D   ++R++    E+G ++         +C 
Sbjct: 130 TNYDVEILQVSKKEAIKT-------FKERDETFKLRIIEDIPEEGLINLYKHEEYIDMCR 182

Query: 696 GTHVSST 702
           G HV +T
Sbjct: 183 GPHVPNT 189


>gi|260914069|ref|ZP_05920542.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631702|gb|EEX49880.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 644

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L ++E  + D+  
Sbjct: 71  IRHSCAHLLGHAIKQLFPNVKMAIGPTIE-NGFYYDVDLDRSLTQEDLDALEKRMLDLAK 129

Query: 645 QNLPVVTRIMNREDA 659
            N  VV ++++ ++A
Sbjct: 130 TNYDVVKKVVSWQEA 144


>gi|92113922|ref|YP_573850.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
 gi|123387452|sp|Q1QWK7|SYT_CHRSD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91797012|gb|ABE59151.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
          Length = 632

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   + ++  +L++IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPDAKMAIGPVID-DGFYYDIDFGQSVSPEDLEAIEKRMKVLID 129

Query: 645 QNLPVVTRIMNREDAIAS 662
               V+   + +E A+A+
Sbjct: 130 HEYEVIREYVTKEQALAT 147


>gi|281210705|gb|EFA84871.1| putative alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 249

 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVN 640
           SI  +A H+L  A+  +L + ++ +  C      R  V ++   KP  S  L+ IED  N
Sbjct: 11  SITDTACHVLKGAIVKVLNTPITVSVECQNKVKGRVCVEYTLDDKPDDST-LQKIEDECN 69

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRV----RVVSVEYEDGGVHSSALCG 695
            II +NLP+    M+R++A A      +   Y  D+      V ++   +    +   C 
Sbjct: 70  RIIKENLPLNAFSMDRKEAEAKYTKEKVNNTYIYDKFPVPESVTTLTLVEIAGWNINCCP 129

Query: 696 GTHVSSTGEI 705
             H+ STGE+
Sbjct: 130 AVHLKSTGEL 139


>gi|254527233|ref|ZP_05139285.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538657|gb|EEE41110.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 638

 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  I  S +      +  DG  +D+      T  +L  IE+ +N +I 
Sbjct: 71  IRHSFAHLIGHAVKQIY-SDIKMAIGPVIEDGFYYDIFSEYRFTPEDLIKIENRINKLIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSA------LCG 695
            N  V    +++++AI +        K  D   ++R++    E+G ++         +C 
Sbjct: 130 TNYDVEILQVSKKEAIKT-------FKERDETFKLRIIEDIPEEGLINLYKHEEYIDMCR 182

Query: 696 GTHVSST 702
           G HV +T
Sbjct: 183 GPHVPNT 189


>gi|300854765|ref|YP_003779749.1| putative monogalactosyldiacylglycerol synthase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434880|gb|ADK14647.1| putative monogalactosyldiacylglycerol synthase [Clostridium
           ljungdahlii DSM 13528]
          Length = 401

 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 27/127 (21%)

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           I G LPG  EE  ++IE +NL  +  +  N Q  FI+  ++++ G+ L            
Sbjct: 297 ITGALPGQEEENPKFIEKYNLGVVCKDINNLQ--FIINNLTLNNGIEL------------ 342

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP---ANEGRGY 299
                   H I+ +++V    Y   NIVN  + +D+  S+  +I D I+P    N  +  
Sbjct: 343 --------HKIKHAQKVFSNPYTSENIVNFILSIDN-NSNKVMIQD-IVPLVSKNSDKSI 392

Query: 300 VLRRIMR 306
           V R + +
Sbjct: 393 VYRHLQK 399


>gi|28871838|ref|NP_794457.1| alanyl tRNA synthetase-like protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|237798485|ref|ZP_04586946.1| alanyl tRNA synthetase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|28855091|gb|AAO58152.1| alanyl tRNA synthetase-related protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331021336|gb|EGI01393.1| alanyl tRNA synthetase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 212

 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 41/200 (20%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +VV   T F+AE+GGQ  D GC      R+++T      E I   + + E         +
Sbjct: 25  DVVISPTIFFAESGGQESDKGCI----NRIEVTQATVVDERII--YRLAEDPDFAVSDLV 78

Query: 572 VLTIDYQNRRQLSINHSATHLL----HHALSTI--LGSHVSQNGSCITPDGLRFDVTHSK 625
            + ID+  R  L   H A  ++    +     +  +G+H+ Q+ +       R D +   
Sbjct: 79  SVEIDWPRRYALMRLHFAAEIVLEFFYKKFPDLEKIGAHIGQHKA-------RIDFSLEG 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            + S     I   V  ++A  LP+ +R                   + D   +    Y  
Sbjct: 132 NV-SQYFPEILQGVEHLVAAGLPIESR-------------------FTDTKCLRRCWYIK 171

Query: 686 GGVHSSALCGGTHVSSTGEI 705
           G   S   CGGTH+ +TGE+
Sbjct: 172 G--FSEVPCGGTHLRTTGEV 189


>gi|224584156|ref|YP_002637954.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254783535|sp|C0Q647|SYT_SALPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|224468683|gb|ACN46513.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 642

 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQ-LWPHTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G  H      +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SS 701
            +
Sbjct: 188 PN 189


>gi|194769724|ref|XP_001966951.1| GF21792 [Drosophila ananassae]
 gi|190622746|gb|EDV38270.1| GF21792 [Drosophila ananassae]
          Length = 451

 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 97/254 (38%), Gaps = 43/254 (16%)

Query: 513 VVFDQTPFYAEAGGQLGDTG----CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           V+ + T  + E GGQ  D G    C + + IR   T V          H +         
Sbjct: 43  VICEDTILFPEGGGQPCDYGTLDECPVRNVIRKGTTAV----------HFVEAPKTFEIG 92

Query: 569 MSLVLTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITPDGLRF 619
             +   +D+  R      HS  HL+         +   S  LGS VS          ++ 
Sbjct: 93  AEVAQVLDFPRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVSY---------IQL 143

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRV 676
              H   I+   L  IE   ND+I +   V   +++ E A     + A   L   +    
Sbjct: 144 STPHL--ISRESLDLIETQANDLIREGREVSVVLVDPEVAQEFQDARAPRGLPKDHEGLA 201

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV +E    G+ S+ +C GTHVS+  ++  + ++    ++  +  +  + G+R    L 
Sbjct: 202 RVVRIE----GIESN-MCCGTHVSNLSQLQCIKLLYAEKVKTNV-LVYFVVGERVLRKLG 255

Query: 737 GQDEKLKSLASFLK 750
              ++ + L   LK
Sbjct: 256 EVFQREQQLTQALK 269


>gi|62179922|ref|YP_216339.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168263848|ref|ZP_02685821.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463268|ref|ZP_02697199.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|73919823|sp|Q57PV3|SYT_SALCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62127555|gb|AAX65258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|195634423|gb|EDX52775.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205347615|gb|EDZ34246.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|322714388|gb|EFZ05959.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 642

 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQ-LWPHTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G  H      +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SS 701
            +
Sbjct: 188 PN 189


>gi|205352944|ref|YP_002226745.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690498|sp|B5RAX3|SYT_SALG2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|205272725|emb|CAR37641.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628018|gb|EGE34361.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 642

 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQ-LWPHTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G  H      +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SS 701
            +
Sbjct: 188 PN 189


>gi|319793842|ref|YP_004155482.1| peptidase m20 [Variovorax paradoxus EPS]
 gi|315596305|gb|ADU37371.1| peptidase M20 [Variovorax paradoxus EPS]
          Length = 491

 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           ++  L I E L+S + R    LD GL++LDGVL  L K   L G +A K Y T  L LD
Sbjct: 194 LRGALPIAELLKSRNVRLDWVLDEGLLVLDGVLPGLSKPAALIG-LAEKGYGTFFLSLD 251


>gi|161614260|ref|YP_001588225.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|194446059|ref|YP_002040590.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198243456|ref|YP_002215793.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857160|ref|YP_002243811.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|189083620|sp|A9N243|SYT_SALPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690315|sp|B5FJA8|SYT_SALDC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690400|sp|B5QVW8|SYT_SALEP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693615|sp|B4T4M8|SYT_SALNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161363624|gb|ABX67392.1| hypothetical protein SPAB_02005 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404722|gb|ACF64944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197937972|gb|ACH75305.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206708963|emb|CAR33293.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 642

 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQ-LWPHTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G  H      +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SS 701
            +
Sbjct: 188 PN 189


>gi|121720172|ref|XP_001276784.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119404996|gb|EAW15358.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 271

 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 33/209 (15%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA--EGIFVH--HAIVERGILRT 567
           +V +QT F+ + GGQ  D G   G  G    +  V+  A   G  +H  H      +   
Sbjct: 51  IVTEQTIFHPQGGGQPSDEGHITGPLGAIFTVAAVRMDAVRNGQVLHFGHFNDTSAVFTE 110

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR-FDVTHSKP 626
             ++  TI+   R   S  H+A H+L  A+  +L   V         +GL+    +H   
Sbjct: 111 GATVEQTINADKRVFYSRLHTAGHVLGAAVKHLLAKEV---------EGLKELKASHFPE 161

Query: 627 ITSAELKSIED---------NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY----N 673
             + E + + D          V+++IA  LPV     + E+    G   L+  +      
Sbjct: 162 SAACEFQGLIDGKWKEPVQRKVDELIAAKLPVQVEWWDEEEFRRRGMERLIPDQSLVAPG 221

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           ++ RVV++   D        CGGTHV +T
Sbjct: 222 EKFRVVNIVGAD-----VYPCGGTHVDTT 245


>gi|16764684|ref|NP_460299.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991842|ref|ZP_02572941.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168244449|ref|ZP_02669381.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448321|ref|YP_002045340.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197262906|ref|ZP_03162980.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22654123|sp|Q8ZPS9|SYT_SALTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690646|sp|B4TGH1|SYT_SALHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16419852|gb|AAL20258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194406625|gb|ACF66844.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197241161|gb|EDY23781.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329759|gb|EDZ16523.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336802|gb|EDZ23566.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261246542|emb|CBG24352.1| ThrRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993213|gb|ACY88098.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157870|emb|CBW17364.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912318|dbj|BAJ36292.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223961|gb|EFX49024.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129604|gb|ADX17034.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 642

 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQ-LWPHTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G  H      +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SS 701
            +
Sbjct: 188 PN 189


>gi|302886448|ref|XP_003042114.1| hypothetical protein NECHADRAFT_86981 [Nectria haematococca mpVI
           77-13-4]
 gi|256723022|gb|EEU36401.1| hypothetical protein NECHADRAFT_86981 [Nectria haematococca mpVI
           77-13-4]
          Length = 434

 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 138/356 (38%), Gaps = 54/356 (15%)

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMK--EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
            ++ E     + +G    +   ++K  +   V C K P + + G     +    Q E + 
Sbjct: 1   MAVTESVSTGRVVGALACQSDSYLKTLDTEVVSCVKAPAEPSKGSKKKKQEAAPQDEWLI 60

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEG--IFVHH 557
           E             +  + E GGQ  D G        D   + I +VQ+      I+   
Sbjct: 61  ECA----------DSVLFPEGGGQPSDHGTITLLSGSDQTPISIKNVQRHGLRCVIYSPQ 110

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH------HALSTILGSHVSQNGSC 611
            +     +R E      +D+  R      H+  HLL       H L T LG  +   G+ 
Sbjct: 111 PLSPGDKIRQE------VDWARRWDHMQQHTGQHLLSAIMMNDHGLKT-LGWGMGAAGTM 163

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT- 670
              D  R      KP T  E++SI+   +++I  NL +  ++   +DA       L G  
Sbjct: 164 NYVDIPR------KP-TEEEMQSIQSRCSELIRDNLSI--KVETPDDA---KHEKLPGDY 211

Query: 671 -KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            K    VRV+ +    G +  +  CG TH+S T  + L+ + S  S+     R+  +TG 
Sbjct: 212 DKSEGVVRVIHI----GDIDINTCCG-THLSQTSHVSLVILGSTQSVHGKNCRLSFMTGD 266

Query: 730 RARSHLMGQDEKLKSLASFLKVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           RA S        + S+A  +  S     V+ +   + +   +L+ +  +RKL L +
Sbjct: 267 RAVSLANASVGAVGSIAKLMSSSSVPTEVLAKTSTMCDTVTELRRV--ERKLMLEI 320


>gi|301626888|ref|XP_002942619.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 683

 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 20/138 (14%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  AL       +    S  T +G  +D+   +  +  + L  +E    D+I Q
Sbjct: 164 HSSAHILGLALEQHYEGCLCHGPS--TENGYFYDIYLPNSTVLGSHLPDLETVCKDVIKQ 221

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYN--------DRVRVVSVEYEDGGVHSSALCGGT 697
            LP     + RED +          KYN        D+V   +  Y  G +    LC G 
Sbjct: 222 KLPFQRIEVAREDLLEL-------FKYNKFKIRTIEDKVDTCTTVYRCGSL--VDLCRGP 272

Query: 698 HVSSTGEIMLLYIVSESS 715
           HV  TG+I  L ++  SS
Sbjct: 273 HVRHTGQIRALKLLKNSS 290


>gi|302387950|ref|YP_003823772.1| tryptophan synthase, alpha subunit [Clostridium saccharolyticum
           WM1]
 gi|302198578|gb|ADL06149.1| tryptophan synthase, alpha subunit [Clostridium saccharolyticum
           WM1]
          Length = 257

 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 46/251 (18%)

Query: 380 EILNGDVAFKLYDTHGLP-LDIMQDILCARGLAGIDIIS----FNQALEEQRSRARAHSL 434
           E+ +   AF  + T G P L I ++++ A   AG D+I     F+  + E      A   
Sbjct: 6   EVFSKGKAFIPFITAGDPDLSITEELVPAMAQAGADLIELGIPFSDPIAEGIVIQEADMR 65

Query: 435 GLGSG-TTEKIWFSLKE-------------------KYGATQFI------GYDLLRGSKF 468
            L SG TT+K++ S+K                     YG+ +FI      G D L     
Sbjct: 66  ALASGVTTDKLFDSVKRIRQKTDVPLAFMTYINPVFVYGSERFIKNAAESGIDALIVPDM 125

Query: 469 MKEDRKVL---CQKPPIDLTNGVSSI----VKAIVQQGE-----IVEEAVSGQKVEVVFD 516
             E+R+ L   C+K  ++L + ++      ++AI    E     +    V+G + E+  D
Sbjct: 126 PFEEREELLPFCRKYGVELISLIAPTSKERIQAIASASEGFIYCVSSMGVTGVRTEINTD 185

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
                A    +  D  CAIG GI    Q  ++ K A+G+ V  AIV+      +  +V  
Sbjct: 186 IREMVALVK-ETKDIPCAIGFGISTPDQAREMSKYADGVIVGSAIVKIAAKYGKDCVVPV 244

Query: 575 IDYQNRRQLSI 585
            DY    + +I
Sbjct: 245 CDYVREMKAAI 255


>gi|158334707|ref|YP_001515879.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158304948|gb|ABW26565.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 606

 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 12/143 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G  I   G  +D     P T  +LK+I+  +  II 
Sbjct: 28  IRHTTSHVMAMAVQKLFPDAQVTIGPWIE-SGFYYDFDSPTPFTDKDLKAIKKEMVKIIK 86

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG------GVHSSALCGGTH 698
           + LPV    ++RE+A     A  LG  Y  ++ ++  + ED       G     LC G H
Sbjct: 87  KKLPVEREEVSREEAKKRIKA--LGEPY--KLEILE-DLEDPITLYHLGDQWWDLCAGPH 141

Query: 699 VSSTGEIMLLYIVSESSIRAGIR 721
           V ST ++    I  ES   A  R
Sbjct: 142 VESTADLNPKAIALESVAGAYWR 164


>gi|44662849|gb|AAS47506.1| threonyl tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 149

 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA--SGAAALLG 669
           +  +G  +D+   +P+   +L  IE  ++ I+ +NL +   ++ RE+A+    G      
Sbjct: 35  VIENGFYYDIDPPEPLGEGDLPEIEARMHQIVKENLELRRFVLPREEALRRFEGKDPYKT 94

Query: 670 TKYNDRVRVVSVEY--EDGGVHS-SALCGGTHVSSTGEI 705
               D    V + +  +  G H  + LC G HV STG I
Sbjct: 95  ELIQDLPEGVEISFYAQGEGTHGFTDLCRGPHVPSTGRI 133


>gi|187920789|ref|YP_001889821.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phytofirmans
           PsJN]
 gi|187719227|gb|ACD20450.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phytofirmans
           PsJN]
          Length = 237

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 23/201 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV  ++  +   GGQ+ D          ++IT V   AEG  + H +     L  + ++ 
Sbjct: 27  VVLGRSALHPGGGGQVSDAATLTHAQGAVRITGV--AAEGDVLWHLL--DAPLELDGNVH 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDG---LRFDVTHSKPIT 628
           + ID   R  ++  H+ TH+L+  +     G+ V+  G+ I  DG   + FD+  +    
Sbjct: 83  VAIDAARRAAVAQLHTVTHILNALVYQRFAGALVT--GAQINADGTARMDFDLPEAD--- 137

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGT----KYNDRVRVVSVEY 683
           +  L+ +E+ VN++I   + V T  +  ++A A+ G    L        +  VR+V +  
Sbjct: 138 NDALRLLEEPVNEVIRSAMEVRTYYVGTDEAKATQGLIRSLSVAPPPTPDGTVRIVEI-- 195

Query: 684 EDGGVHSSALCGGTHVSSTGE 704
             G +   A CGGTH+++T +
Sbjct: 196 --GDLDRQA-CGGTHLTNTAQ 213


>gi|242239483|ref|YP_002987664.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242131540|gb|ACS85842.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 642

 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   +P+T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPETQMAIGPVID-NGFYYDVDLDRPLTQEDLDLLEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G  H      +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GESYKVAILDENISRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SS 701
            +
Sbjct: 188 PN 189


>gi|73919796|sp|Q5UX65|SYT_HALMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D TP   E G  + D    IG G+            G+     + +   L  ++ L +  
Sbjct: 10  DGTPLEVERGSTVEDVAYEIGPGLG------DDTVAGVVDGELVDKHAPLTADVELEIVT 63

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  +     + HSA H+   AL  +        G   T +G  +D+T    I   +L++I
Sbjct: 64  ESSDEYLDVLRHSAAHVFAQALQRLYSDAKLTIGPW-TDNGFYYDIT-GVDIDEDDLEAI 121

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV---VSVEYEDGG 687
           E    +II ++L +   +++R+DA            +L T+  D   V      E+ED  
Sbjct: 122 EAEAEEIIEEDLDIERELVDRDDAFERYEDNQFKQDILETEAADDEEVSFYTQGEFED-- 179

Query: 688 VHSSALCGGTHVSSTGEI 705
                LC G HV STGEI
Sbjct: 180 -----LCQGPHVESTGEI 192


>gi|310801123|gb|EFQ36016.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 442

 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 185/450 (41%), Gaps = 81/450 (18%)

Query: 456 QFIGYDLLRGSKFMK--EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE- 512
           Q +G    + S +++  E   + C+K P        S  +    + +   +AV+G   E 
Sbjct: 10  QVVGALACQRSSYLRTLEAEVISCEKRP-------PSTARKNGNKDKSAGDAVNGDTSET 62

Query: 513 --VVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHA---IVERGI 564
             + F  +  + E GGQ  D G        G    + +  ++     V+H+   +V    
Sbjct: 63  WLIEFADSVLFPEGGGQPSDHGTITPLSNPGATPILIEFVERVGLRCVYHSPQPLVPGET 122

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST-----ILGSHVSQNGSCITPDGLRF 619
           +R E      +D+Q R      H+  HLL   ++T      LG  + ++G+    D  R 
Sbjct: 123 VRQE------VDFQRRWDHMQQHTGQHLLSAVMNTYDDLNTLGWGMGKSGAMNYVDLPR- 175

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---V 676
                KP + AEL++I+   NDII  + P+   +   +DA        +   Y+     V
Sbjct: 176 -----KP-SEAELQAIQARCNDIIRSSAPIT--VETPDDA----KTHKMPEDYDQAKGVV 223

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI-----VSESSIR----AGIRRI---- 723
           RV+ +     G      C GTH+S T  I L+ +     V   + R    AG R I    
Sbjct: 224 RVIRI-----GEIDRNTCCGTHLSQTSHISLILVHHGEPVHGKNFRLYFSAGDRAINLAA 278

Query: 724 EAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            +I+     S L+      DE ++S+ + ++ S  ++  R +++  +  + +    K +L
Sbjct: 279 SSISAMGTISKLLSSKNTADEVVQSVKA-VQASAADLKKREKKLLSDIAEFEAEAVKARL 337

Query: 780 QLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           Q + + +  H+   + +F+  + +        S+ DA+   +  G + +V   +EKK+  
Sbjct: 338 QTS-KSVWIHRADGNADFVKWVAA--------SIKDAV---MACGGVAVVATGEEKKSGQ 385

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+V+ E          +  +   V GGG G
Sbjct: 386 LVVLGEKSSVDAVVPKIKDIVTGVKGGGAG 415


>gi|18313258|ref|NP_559925.1| alanyl-tRNA synthetase related protein [Pyrobaculum aerophilum str.
           IM2]
 gi|18160779|gb|AAL64107.1| alanyl-tRNA synthetase related protein [Pyrobaculum aerophilum str.
           IM2]
          Length = 238

 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 17/218 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+ D+T F+   GG   D+G  I    R       K  E   V H +    + +    +
Sbjct: 27  EVILDRTAFHDGTGGVQADSGYIIFGNERYFAAASHKGGE---VVHVLDRAPVFKPGDVV 83

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D++ R +    H+A H+L   L     + ++  G  IT +  R D      + +  
Sbjct: 84  RGELDWEKRYKKMRLHTAAHILSAVLYDKYNALIT--GGEITHEYARDDFNIEGDMATVR 141

Query: 632 LKSIEDN---VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYED 685
            K+ E+    VN+I  + + +    + RE+A+       L  +      R+R+V +    
Sbjct: 142 -KAFEEAVAVVNEIAQRGIEIKVYWLPREEALKIPGVVKLAERMPPDIPRLRIVEIP--- 197

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            GV   A  GG HV +T EI ++ I+   +   G +R+
Sbjct: 198 -GVDVQA-DGGPHVKNTREIGVVKIIKVENRGKGKKRL 233


>gi|195952891|ref|YP_002121181.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932503|gb|ACG57203.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 637

 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 575 IDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDV-THSKPITSAE 631
           I  Q++  L I  HS  H++  AL  I G      G    T DG  +DV      I   +
Sbjct: 57  ITKQDKESLDILRHSLAHIMAQALKEIYGDEKVHLGIGPTTEDGFFYDVEVEGHHIGEED 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LK IE+ + +II + L +  + + RE+A+
Sbjct: 117 LKIIENKMKEIIKRGLDIKRKELPREEAL 145


>gi|229817631|ref|ZP_04447913.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
 gi|229785420|gb|EEP21534.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
          Length = 677

 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 72/190 (37%), Gaps = 33/190 (17%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  I  +     G  I  DG  +D    +P T  +LK+IE  +  II 
Sbjct: 69  MRHSATHVMAQAVQEIYPNAKLGVGPVIK-DGFYYDFDVEQPFTPEDLKNIEKRMQRIIK 127

Query: 645 QNLPVVTRIM--------------------NREDAIASGAAALLGTK---YNDRVRVVSV 681
            +     R++                    ++E  +   AA  +  K   + D V     
Sbjct: 128 SSQSFRRRVVTEEEALAEEADQPYKIELIKDKEAHLDPAAATEVSEKELSFYDNVD---- 183

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDE 740
              DG V    LC G H+ +T  I    I  E S  A  R  EA    QR         E
Sbjct: 184 --RDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEANPMLQRIYGAAFATKE 239

Query: 741 KLKSLASFLK 750
            LK+  + L+
Sbjct: 240 DLKAYQTRLE 249


>gi|146295564|ref|YP_001179335.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409140|gb|ABP66144.1| histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 336

 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           RK  LI  ++K++LN ++L+CH + D  +++ +I ++ S  LK
Sbjct: 198 RKYSLIFIRKKIKLNYKELNCHVLTDEKWLTFVIEQILSNALK 240


>gi|312077291|ref|XP_003141239.1| threonyl-tRNA synthetase [Loa loa]
 gi|307763596|gb|EFO22830.1| threonyl-tRNA synthetase [Loa loa]
          Length = 681

 Score = 38.1 bits (87), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 27/142 (19%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDV-THSKPITSAELKSIEDNVNDI 642
           HS+ H++  A+    G H+     C  P   +G  +D+      IT  +   +E  +  +
Sbjct: 115 HSSAHIMGEAMERYCGGHL-----CYGPPILEGFYYDMWKEGSAITPDDFPKLEQIIKCV 169

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVE--------YEDGGVHSSAL 693
           +    P    ++++ED        L   KYN  +VR+++ +        Y  G +    L
Sbjct: 170 VKDKQPFERLVVSKEDL-------LQMFKYNKFKVRIINEKITTPFTTVYRCGPLID--L 220

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G HV  TG++  L ++  SS
Sbjct: 221 CRGPHVRHTGKVKALSVIKTSS 242


>gi|229060032|ref|ZP_04197403.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228719251|gb|EEL70859.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 639

 Score = 38.1 bits (87), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 20/152 (13%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R I  +    ++T+D     +++  HSA H+L  A+  I G+ V      I  +G  +D+
Sbjct: 53  RNIEESAKVEIITMDSDEGVKIA-RHSAAHILAQAVKRIYGN-VKLGVGPIIENGFYYDM 110

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +   +L  IE  +  II +N+ +    ++RE+         L  + ND +++  +
Sbjct: 111 DLPSSVNVEDLPKIEKEMKKIINENVKIERVEVSREE------VKKLFQEMNDHLKLELL 164

Query: 682 E----------YEDGGVHSSALCGGTHVSSTG 703
           E          Y+ G      LC G H+ STG
Sbjct: 165 EAIPNDESVTIYKQGEF--VDLCRGPHLPSTG 194


>gi|46114298|ref|XP_383167.1| hypothetical protein FG02991.1 [Gibberella zeae PH-1]
          Length = 713

 Score = 38.1 bits (87), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 107/274 (39%), Gaps = 55/274 (20%)

Query: 524 AGGQLGDTGCAIG----DGIRLQITDVQKKAEGIFVHHA--IVERGILRTEMSLVLTIDY 577
           +GGQ  D G        D   + IT+VQ++     +H A  I     +R E      ID+
Sbjct: 366 SGGQPCDHGTITPLSGEDLAPIPITNVQREGLRCIIHSAKPIAPGTEVRQE------IDW 419

Query: 578 QNRRQLSINHSATHLL------HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           + R      H+  HLL      +H L T LG  +  +G      G  +     KP T  E
Sbjct: 420 KRRWDHMQQHTGQHLLSAVMMKNHELKT-LGWGMGTDG------GFNYVDLQRKP-TDEE 471

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +++I+    + I +NL +                  + T  N +   +  +Y+       
Sbjct: 472 MQAIQMECAEKIRENLSIK-----------------VDTPDNTKDHKLPGDYDK------ 508

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             C GTH++ T  I L+ + S  S+     R+  I G R  +        + ++A  + V
Sbjct: 509 --CCGTHLAQTSHISLIILGSTQSVHGKNCRLSFIAGDRGINLASSSVSAINTIAKMMSV 566

Query: 752 SQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           S     VV R   + +    L+   ++RKL L V
Sbjct: 567 SSNPTEVVTRATALSDSVTDLK--RSERKLLLEV 598


>gi|55379994|ref|YP_137844.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55232719|gb|AAV48138.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 672

 Score = 37.7 bits (86), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 23/198 (11%)

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D TP   E G  + D    IG G+            G+     + +   L  ++ L +  
Sbjct: 40  DGTPLEVERGSTVEDVAYEIGPGLG------DDTVAGVVDGELVDKHAPLTADVELEIVT 93

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  +     + HSA H+   AL  +        G   T +G  +D+T    I   +L++I
Sbjct: 94  ESSDEYLDVLRHSAAHVFAQALQRLYSDAKLTIGPW-TDNGFYYDIT-GVDIDEDDLEAI 151

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV---VSVEYEDGG 687
           E    +II ++L +   +++R+DA            +L T+  D   V      E+ED  
Sbjct: 152 EAEAEEIIEEDLDIERELVDRDDAFERYEDNQFKQDILETEAADDEEVSFYTQGEFED-- 209

Query: 688 VHSSALCGGTHVSSTGEI 705
                LC G HV STGEI
Sbjct: 210 -----LCQGPHVESTGEI 222


>gi|312128702|ref|YP_003993576.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778721|gb|ADQ08207.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 336

 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           RK  LI  ++K++LN ++L+CH + D  +++ +I ++ S  LK
Sbjct: 198 RKYSLIFIRKKIKLNYKELNCHVLTDEKWLTFVIEQILSNALK 240


>gi|312623479|ref|YP_004025092.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203946|gb|ADQ47273.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 336

 Score = 37.7 bits (86), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           RK  LI  ++K++LN ++L+CH + D  +++ +I ++ S  LK
Sbjct: 198 RKYSLIFIRKKIKLNYKELNCHVLTDEKWLTFVIEQILSNALK 240


>gi|257076519|ref|ZP_05570880.1| alanyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 238

 Score = 37.7 bits (86), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEMSL 571
           VV D+T FY  +GGQ  DTG        ++I DV Q+  E   + H   +   +    ++
Sbjct: 27  VVLDKTLFYPTSGGQPNDTGILKTSNGEMKIIDVIQEDGE---IRHIADKIENVTPGANV 83

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      H+A H++   ++    + +   G  I  D  R D +    I    
Sbjct: 84  HGVIDWDKRYIHMRYHTAVHIIDGVVNNDYKNGLLTGGQ-IYDDHARVDFSFD-IIDRDL 141

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRVVS-VEYEDGGV 688
           +  I     D+I     V  R ++ E+A  I   A    G +  +++ VV  +E E+   
Sbjct: 142 ITQIISKAQDVINSGHKVFAREISSEEALKIPGLARTEPGRQLIEKLPVVRIIEIENFDF 201

Query: 689 HSSALCGGTHVSSTGEI 705
            +    GGTHV +TGE+
Sbjct: 202 QAD---GGTHVKNTGEV 215


>gi|317129892|ref|YP_004096174.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474840|gb|ADU31443.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 645

 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 23/167 (13%)

Query: 549 KAEGIFV--HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           K +G +V     +VE G L      ++T D Q+  ++ + HS  HL+  A+   L  +V 
Sbjct: 42  KVDGQYVDLRQPLVENGNLE-----IITYDSQDGLEI-LRHSTAHLMAQAVKR-LYENVK 94

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---- 662
                +   G  +D+     +T  +L+ IE  +  I+ +NL +    ++RE A+      
Sbjct: 95  LGVGPVIEGGFYYDIDMEHSLTPEDLEKIEKEMKRIVDENLEIRRVEVSRETAVQRYKEI 154

Query: 663 ----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   L      D + +    YE G      LC G H+ ST +I
Sbjct: 155 GDDLKLELLEDIPEGDTISI----YEQGEFFD--LCRGVHLPSTSKI 195


>gi|262173105|ref|ZP_06040782.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451]
 gi|261890463|gb|EEY36450.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451]
          Length = 243

 Score = 37.7 bits (86), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 18/207 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-- 568
           V V  D + FY + GGQ  D G    +G+  ++   +   EGI   H +     L     
Sbjct: 29  VAVYCDSSIFYPQGGGQPCDLGSLEINGVAYRVHHTEMTEEGIA--HVLESHPSLLVSHG 86

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M  V  ID + R   + +H+A HL+ H +   + +++S       PD    ++  S+   
Sbjct: 87  MQCVQRIDMKRRLINAKSHTAGHLISHIIEE-MDNNLSPAKGHHYPDDSYIELIESERTN 145

Query: 629 ---SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEY 683
              S EL  I + +N ++    P   + ++ +         LL      +  +R++++  
Sbjct: 146 DNFSVEL--INEQIN-LLVNRAPRAIQSIDLDLTEVQSLRPLLCKFIPQSTHIRMIAI-- 200

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            DG   +   CGGTHV ST E+  L++
Sbjct: 201 -DG--FTPVPCGGTHVVSTSELNGLHV 224


>gi|195393664|ref|XP_002055473.1| GJ18773 [Drosophila virilis]
 gi|194149983|gb|EDW65674.1| GJ18773 [Drosophila virilis]
          Length = 431

 Score = 37.7 bits (86), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 34/229 (14%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EA   + V +V + T  + E GGQ  D G   G  +R    +V +K  G    H +    
Sbjct: 36  EARQLRGVNLVCEDTILFPEGGGQPCDYGTINGQPVR----NVLRK--GSTAIHFVESST 89

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLL---------HHALSTILGSHVSQNGSCITP 614
                  +   +D+  R      HS  HL+         +   S  LG+ VS        
Sbjct: 90  CFEEGTEVQQHLDWPRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGASVSY------- 142

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTK 671
             ++    H   I+   L  IE   ND+I +   V   +++ E A     + A   L   
Sbjct: 143 --IQLSTPHL--ISRESLDLIERQANDLIREGRAVSVLLVDPEVAQEFQDARAPRGLPKD 198

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           +    RVV +E    G+ S+ +C GTHV++  ++  + ++    +++ +
Sbjct: 199 HEGLARVVRIE----GIESN-MCCGTHVTNLSQLQCIKLLYAEKVKSNV 242


>gi|154318102|ref|XP_001558370.1| hypothetical protein BC1G_03034 [Botryotinia fuckeliana B05.10]
 gi|150843692|gb|EDN18885.1| hypothetical protein BC1G_03034 [Botryotinia fuckeliana B05.10]
          Length = 269

 Score = 37.7 bits (86), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 20/205 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTE 568
           ++   T F+ + GGQ  D G      G    +Q+  +    +G  +H             
Sbjct: 49  IITKSTIFHPQGGGQPSDEGVMESEEGTKFTVQMVRMSAATDGEVLHFGSYSTPTQFLPG 108

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS---QNGSCITPDGLRFDVTHSK 625
             +   ID + R   S  H+A H+L  A+  ++ S V    +  +   P     +   + 
Sbjct: 109 QEITQKIDKEKRLLYSRYHTAGHVLGAAVRHLVSSSVPNFDETKASHFPSSAACEF--AG 166

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA------ALLGTKYNDRVRVV 679
            I S     I+  ++  I  ++PV     +  D IA+G        A +G    ++ RVV
Sbjct: 167 LIESTWKTPIQQKLDGYIEADMPVEIHWWDEADFIANGMERLIPDRAAMGMTKEEKFRVV 226

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGE 704
            +   +     +  CGGTHV ST +
Sbjct: 227 KIVGAE-----TYPCGGTHVDSTSQ 246


>gi|300711550|ref|YP_003737364.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125233|gb|ADJ15572.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 640

 Score = 37.7 bits (86), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 27/200 (13%)

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D +    EAG  + D    IG G+       +    G+     + +   +  ++ + +  
Sbjct: 9   DGSELAVEAGSTVEDVAYEIGPGLG------RDTVAGVVDGEFVAKEHPIEKDVEIEIVT 62

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  +    ++ HSA H+   AL   L S  +      T DG  +DVT  + +  A+L+ I
Sbjct: 63  ESSDEYLDALRHSAAHVFAQALQR-LHSEATLTIGPWTDDGFYYDVTGVE-LDEADLEEI 120

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSA-- 692
                +II  +LP+    M+RE+A            Y D   +   +E E  G    +  
Sbjct: 121 SAEAEEIIEADLPIERVEMSREEAFEY---------YEDNPFKREILEEEAAGEDPVSFY 171

Query: 693 -------LCGGTHVSSTGEI 705
                  LC G HV+STGEI
Sbjct: 172 EQAEFRDLCRGPHVASTGEI 191


>gi|213650865|ref|ZP_03380918.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 622

 Score = 37.7 bits (86), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+   L  H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQ-LWPHTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSA---LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G  H      +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SS 701
            +
Sbjct: 168 PN 169


Searching..................................................done


Results from round 2




>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039868|gb|ACT56664.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 898

 Score = 1218 bits (3152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 898/898 (100%), Positives = 898/898 (100%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA
Sbjct: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL
Sbjct: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG
Sbjct: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK
Sbjct: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV
Sbjct: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK
Sbjct: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ
Sbjct: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP
Sbjct: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
           PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR
Sbjct: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI
Sbjct: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI
Sbjct: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI
Sbjct: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ
Sbjct: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI
Sbjct: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK
Sbjct: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898


>gi|315122762|ref|YP_004063251.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496164|gb|ADR52763.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 906

 Score = 1068 bits (2761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 661/901 (73%), Positives = 776/901 (86%), Gaps = 4/901 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M N+ SIR TFL+FFQK  H++L SSSLIP NDPTLMFTN+GMV FKNIFT QEK  Y+ 
Sbjct: 1   MRNLGSIRKTFLDFFQKREHKILDSSSLIPHNDPTLMFTNAGMVQFKNIFTSQEKRSYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKCVRAGGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKERAI+LAW+LLTKEFD+
Sbjct: 61  AATVQKCVRAGGKHNDLDNVGRTTRHHTFFEMLGNFSFGDYFKERAIKLAWELLTKEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D RR+ +TVYD DEEAF LWKKISGL ++KIIR+   DNFWSMA+TGPCGPCSEIFFDQG
Sbjct: 121 DCRRIVVTVYDGDEEAFNLWKKISGLPSNKIIRVAGKDNFWSMADTGPCGPCSEIFFDQG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E   GGLPGS+E G+RY+EIWNLVFMQFEQ++++ER ILP MSIDTGMGLER++ VLQ K
Sbjct: 181 EGFLGGLPGSAEAGDRYLEIWNLVFMQFEQKSQKERCILPSMSIDTGMGLERISAVLQGK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           T+NYDIDLFK LIQASEQ+TG+KY+G++I+NHRVIVDHLRSSSFLIADGILP NEGRGYV
Sbjct: 241 TDNYDIDLFKTLIQASEQITGVKYKGDDIINHRVIVDHLRSSSFLIADGILPTNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAMCYARLLGY +PLMM L P LC+EMGSAYPELIQA+LLIEETL+ ED RF K
Sbjct: 301 LRRIMRRAMCYARLLGYEDPLMMRLFPVLCSEMGSAYPELIQAQLLIEETLKVEDMRFSK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD+G+ LLD V S L K+ IL+G VAFKLYDTHGLPLDIMQDIL ARGL G+D+ SF Q
Sbjct: 361 TLDKGIYLLDEVSSSLEKNAILDGSVAFKLYDTHGLPLDIMQDILWARGLGGVDVASFKQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV----L 476
           +LEEQRS+AR+H LGLG   TEKIWFSLKEKYG TQF+GY++  GSK +  D K     L
Sbjct: 421 SLEEQRSKARSHCLGLGEKITEKIWFSLKEKYGTTQFVGYNIHHGSKVIAGDEKKGDYSL 480

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            QKP +D T G+ +IVKAIV Q  IV+ A +GQKVEV+FDQTPFYAE+GGQ+GDTG A+G
Sbjct: 481 SQKPSVDFTQGIPAIVKAIVLQDSIVDVARAGQKVEVLFDQTPFYAESGGQVGDTGIAVG 540

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G+ LQITDVQKK  GIFVHHA +E G+LRTEM ++LTI+YQ+RRQLSINHSATHLLH A
Sbjct: 541 EGVSLQITDVQKKVGGIFVHHATIEHGVLRTEMPIILTINYQDRRQLSINHSATHLLHAA 600

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L TILG HVSQ GS I P+ LRFD+ HSKPIT  E+K I+D++ND+IAQN  ++TRIMN 
Sbjct: 601 LRTILGPHVSQKGSHIIPERLRFDIVHSKPITREEIKLIQDHINDVIAQNYSIITRIMNI 660

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +DAIASG++AL G KY+D+VRVVS+E +DG V++S LCGGTHVSSTGEIML++IVSES++
Sbjct: 661 DDAIASGSSALFGKKYSDKVRVVSIESDDGRVYASELCGGTHVSSTGEIMLVHIVSESAV 720

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA++GQRARS+L+ QDEK++SLASFLKV   NVV RVEEIWEE R+L LI+AK
Sbjct: 721 SAGIRRIEAVSGQRARSYLVEQDEKVRSLASFLKVQPSNVVKRVEEIWEERRELHLINAK 780

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            KL+LNV+DLSCH IA+VNFMSH+I + D KELK ++D LQKKI+SGIIML+G+SKEKKA
Sbjct: 781 HKLKLNVDDLSCHTIANVNFMSHVIPDADFKELKGLIDMLQKKIKSGIIMLIGVSKEKKA 840

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           SV+I VT+DL+DRFNA++L RL+AKVLGG GGGGRP+MAQSGGP+GNK DQ+IA + SFL
Sbjct: 841 SVVIAVTQDLIDRFNAINLVRLAAKVLGGSGGGGRPNMAQSGGPDGNKVDQSIANIVSFL 900

Query: 897 K 897
           K
Sbjct: 901 K 901


>gi|325293275|ref|YP_004279139.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325061128|gb|ADY64819.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 897

 Score = 1033 bits (2670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/897 (54%), Positives = 646/897 (72%), Gaps = 37/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 11  MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 71  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 130

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 131 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 190

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 191 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 250

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DLF+ LI AS + TG+  EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 251 KHDNYDTDLFRALISASVEATGVPAEGEKRASHRVIADHLRSSAFLIADGVLPSNEGRGY 310

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 311 VLRRIMRRAMRHAELLGSREPLIYKLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 370

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    S L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 371 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 429

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK GAT+F+GYD                  
Sbjct: 430 DAMQRQKAEARSHWAGSGDKATETVWFELKEKLGATEFLGYDT----------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +++AIV+ G+ V+ A  G+ V++V +QTPFY E+GGQ+GDTG   GD  
Sbjct: 473 ------ETAEGVIQAIVKDGKSVDSAAEGETVQIVVNQTPFYGESGGQMGDTGVISGDNG 526

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +++ QKK EG+FVH   V +G L+ + ++ LT+D+  R +L  NHSATHLLH AL  
Sbjct: 527 TFTVSETQKKGEGLFVHSGTVSKGGLKLDDAVQLTVDHDRRSRLRANHSATHLLHEALRE 586

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +E+  N+I+ QN PVVTR+M+ +DA
Sbjct: 587 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNSPVVTRLMSVDDA 646

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV++TG+I L+ I+ ES
Sbjct: 647 IAEGAMALFGEKYGDEVRVVSMGTGVHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 706

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TGQ A ++L  QDE++K+LAS LKV  G+V+ RVE + +E +KL  +L
Sbjct: 707 AVGAGVRRLEAVTGQGALAYLSEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 766

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL +     +       ++A VNF++  +S +D+K+LK + D  +  I SG+++L
Sbjct: 767 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANIGSGVVLL 826

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +S++ KAS +  VTEDL  RF+AVD+ R ++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 827 IAVSEDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGAK 883


>gi|15965551|ref|NP_385904.1| alanyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|307302671|ref|ZP_07582427.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|307318519|ref|ZP_07597953.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|7404473|sp|P27866|SYA_RHIME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15074732|emb|CAC46377.1| Alanyl-tRNA ligase [Sinorhizobium meliloti 1021]
 gi|306895859|gb|EFN26611.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306903035|gb|EFN33626.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 887

 Score = 1028 bits (2659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/909 (55%), Positives = 661/909 (72%), Gaps = 37/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + +  NG+ AFKLYDT+G PLD+ QD L A+G+ G+D  +F 
Sbjct: 361 KTLERGLNLLAEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKGI-GVDTDAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF L++K+GAT F+GYD                  
Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFELRDKHGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ AIV+ G +VE A  G+ V++V +QTPFY E+GGQ+GDTG    +  
Sbjct: 463 ------ESAEGVILAIVKDGAVVESAAKGENVQLVLNQTPFYGESGGQVGDTGVITTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L +TD QK+ EG+FVH+  VE G ++T  +  LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLTVTDTQKRGEGLFVHYCTVEEGSVKTGEAAALTVDHARRARLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+II QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIIVQNTPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +VSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLRGSKAGKPYSVELCGGTHVSATGDIGLVRVVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           ++ AG+RR+EA+TG+ AR++L  QDE++K+LA+ LKV   +V+GRVE + +E RKL+   
Sbjct: 697 AVGAGVRRVEALTGEAARAYLGEQDERVKTLAAALKVQPADVLGRVEALLDERRKLEREL 756

Query: 774 -HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL L     N    +   I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALAGDGQNGSGDAARDIGGVRFLGRVVSGVEPKDLKSLADDGKKSLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G +A +
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGRAAE 876

Query: 888 AIAGVASFL 896
           AI  VA  L
Sbjct: 877 AIEAVAGAL 885


>gi|159184958|ref|NP_354854.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22096194|sp|Q8UE87|SYA_AGRT5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159140236|gb|AAK87639.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 887

 Score = 1027 bits (2656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/897 (54%), Positives = 645/897 (71%), Gaps = 37/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DLF+ LI AS + TG+  EG +  +HRVI DHLRSS+FLIADG+LP++EGRGY
Sbjct: 241 KHDNYDTDLFRALIAASVEATGVPAEGEHRASHRVIADHLRSSAFLIADGVLPSSEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PL+  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAELLGSRDPLIYRLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    S L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 361 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK+GAT+F+GYD                  
Sbjct: 420 DAMQRQKAEARSHWAGSGDKATETVWFELKEKFGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +++AIV+ G+ V+ A  G+ V +V +QTPFY E+GGQ+GDTG  +GD  
Sbjct: 463 ------ESAEGVIQAIVRDGKEVDSAAEGETVHIVVNQTPFYGESGGQMGDTGVIVGDAG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++  QKK EG+FVH   V +G L+   ++ LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 TFDVSGTQKKGEGLFVHSGTVSKGGLKVNEAVQLTVDHDRRSRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEDMANEIVLQNSPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV++TG+I L+ I+ ES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ +G+RR+EA+TGQ A ++L  QDE++K+LAS LKV  G+V+ RVE + +E +KL  +L
Sbjct: 697 AVGSGVRRLEAVTGQGALAYLAEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 756

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL +     +       ++A VNF++  +S +D+K+LK + D  +  + SG+++L
Sbjct: 757 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANLGSGVVLL 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +S + KAS +  VTEDL  RF+AVD+ R ++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 IAVSDDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGTK 873


>gi|150396732|ref|YP_001327199.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|205830211|sp|A6U9N4|SYA_SINMW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150028247|gb|ABR60364.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 887

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/895 (55%), Positives = 656/895 (73%), Gaps = 37/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  NG+ AFKLYDT+G PLD+ QD L A+G+ G+D  +F 
Sbjct: 361 KTLERGLNLLEEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKGI-GVDTDAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF L++K+GAT F+GYD                  
Sbjct: 420 AAMQRQKAEARANWTGSGDAATETIWFELRDKHGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +++AIV+ G +VE A  G+ V++V +QTPFY E+GGQ+GDTG    +  
Sbjct: 463 ------ESAEGVIQAIVRDGTVVESASKGETVQLVLNQTPFYGESGGQVGDTGVVTTESG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L +TD QK+ EG+FVH+ +VE G ++T  +  L +D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLTVTDTQKRGEGLFVHYCVVEEGSVKTGEAAALAVDHARRTRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HVSQ GS + P+ LRFDV+H KP+TS ELK +E+  N+II QN PVVTR+M+ +DA
Sbjct: 577 VLGTHVSQKGSLVAPERLRFDVSHPKPMTSEELKVVEEMANEIIVQNTPVVTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ IVSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLHGSKAGKAYSVELCGGTHVSATGDIGLVRIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           ++ +G+RR+EA+TG+ AR++L  QDE++K+LA+ LKV   +V+GRVE + +E RKL+   
Sbjct: 697 AVGSGVRRVEALTGEAARAYLGEQDERVKALAAALKVQPSDVLGRVESLLDERRKLEREL 756

Query: 774 -HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL L     N    +  +I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALAGDGQNGSGEAAREIGGVRFLGRVVSGVEPKDLKSLADDGKKTLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDG 871


>gi|116252382|ref|YP_768220.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|205830192|sp|Q1MFZ9|SYA_RHIL3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115257030|emb|CAK08124.1| putative alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 884

 Score = 1026 bits (2653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/905 (54%), Positives = 643/905 (71%), Gaps = 38/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI   E   G+K EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVKAEG--SASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTDLAKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF LKEK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELKEKHGATEFLGYDT----------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+AIV+ G +  EA +G KV++V  QTPFY E+GGQ+GDTG    D  
Sbjct: 461 ------ETAEGVVQAIVKDGAVAAEASAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHQGTVVDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVV++       + G  +S  LCGGTHV +TG+I L+ ++ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKPYSIELCGGTHVGATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QDE++K+LA+ LKV  G V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754

Query: 775 --AKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V F+   IS VD K+LK + D  +  I SG++ LV
Sbjct: 755 ADAKRKLAMGGGQGGSVDAVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALV 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S + KAS ++ VT DL+ R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 815 GVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKADEA 874

Query: 889 IAGVA 893
           I  VA
Sbjct: 875 IEAVA 879


>gi|222086162|ref|YP_002544694.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723610|gb|ACM26766.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 886

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/896 (56%), Positives = 658/896 (73%), Gaps = 36/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYTT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ  KQER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKQERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI+ASE+ TG+K EG +  +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ L  ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALVQQMGRAYPELVRAEALTSETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   S L K + L+G+ AFKLYDT+G PLD+ QD L ARG+ G+DI SF 
Sbjct: 361 KTLERGLSLLNDATSTLHKGDSLDGETAFKLYDTYGFPLDLTQDALRARGI-GVDISSFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR+H  G G   TE IWF LKEK+GAT+F+GYD                  
Sbjct: 420 DAMERQKAEARSHWTGSGDKATETIWFELKEKHGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +++AIV+ G  V+ A +G KV+++ +QTPFY E+GGQ+GDTG    D  
Sbjct: 463 ------EVAEGVIQAIVKDGVAVDSASAGDKVQIIVNQTPFYGESGGQMGDTGVISSDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L ++D QKK EG+FVH A V  G ++T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KLAVSDTQKKGEGLFVHIATVSDGTIKTGDAVVLTVDHNRRSRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTH S+TG+I L+ I+ +S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGVRGAKAGKPYSIELCGGTHASATGQIGLIRILGDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR +L  QD+++K+LA+ LKV   +VV RVE + +E RKL  +L
Sbjct: 697 AVGAGVRRIEAVTGESARDYLAEQDDRVKALATALKVQPTDVVSRVEALMDERRKLEREL 756

Query: 773 IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +   I  V F+   IS VD K+LK + D  +  + SG++ L+
Sbjct: 757 ADAKRKLAMGGGQGGSADAVRDINGVKFLGKAISGVDPKDLKGLADEGKTSLGSGVVALI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 GVSEDGKASAVVAVTDDLIGRFSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGAK 872


>gi|241204888|ref|YP_002975984.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858778|gb|ACS56445.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 884

 Score = 1026 bits (2652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/905 (55%), Positives = 644/905 (71%), Gaps = 38/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ    ER  LP+ SIDTGMGLERMA VLQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTAPGERSPLPRPSIDTGMGLERMAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI   E   G+K EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVKAEG--SASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    ++L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTNLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF LKEK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELKEKHGATEFLGYDT----------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+AIV++G +   A +G KV++V  QTPFY E+GGQ+GDTG    D  
Sbjct: 461 ------ETAEGVVQAIVKEGAVSTAAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHQGTVIDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVV++       + G  +S  LCGGTHV +TG+I L+ ++ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKAYSIELCGGTHVGATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QDE++K+LA+ LKV  G V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754

Query: 775 --AKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V F+   IS VD K+LK + D  +  I SG++ LV
Sbjct: 755 GDAKRKLAMGGGQGGSVDAVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALV 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S + KAS ++ VT DL+ R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 815 GVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKADEA 874

Query: 889 IAGVA 893
           I  VA
Sbjct: 875 IEAVA 879


>gi|227822193|ref|YP_002826164.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227341193|gb|ACP25411.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 887

 Score = 1024 bits (2648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/895 (55%), Positives = 652/895 (72%), Gaps = 37/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K+ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVNLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE+ TG+K EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + +  +G+ AFKLYDT+G PLD+ QD L  +G+  +D  +F+
Sbjct: 361 KTLERGLSLLADASAGLSEGDQFDGETAFKLYDTYGFPLDLTQDALRTKGIT-VDTDAFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF LKEK+GAT F+GYD                  
Sbjct: 420 TAMQRQKAEARANWAGSGEAATETIWFELKEKHGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +++AIV+ G +VE A  G+ V+++ +QTPFY E+GGQ+GDTG    +  
Sbjct: 463 ------ESAEGVIQAIVRDGAVVESASKGESVQLILNQTPFYGESGGQMGDTGVIATETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QK+ EG+FVH+  V  GI++T  +  LT+D+  R +L  NHSATHLLH AL  
Sbjct: 517 KVAVTDTQKRGEGLFVHYGTVTEGIVKTGEAAALTVDHARRLRLRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ EL+ +E+  N++I QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELRIVEEMANEVIVQNTPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +VSES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGIRGSKAGRPYSVELCGGTHVSATGDIGLVRVVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           ++ AG+RR+EA+TG+ AR++L  QDE++KSLAS LKV   +V+GRVE + +E RKL+   
Sbjct: 697 AVGAGVRRLEALTGEAARAYLNEQDERVKSLASALKVQPADVLGRVEALLDERRKLEREL 756

Query: 774 -HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             AK+KL L     N    +  +I  V F+  ++S V+ K+LKS+ D  +K + SG++  
Sbjct: 757 TEAKKKLALVGDGENGSGDAAREIGGVRFLGKVVSGVEPKDLKSLADDGKKTLGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           VG+S + KAS ++ VT+DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDG 871


>gi|86357937|ref|YP_469829.1| alanyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|86282039|gb|ABC91102.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 899

 Score = 1022 bits (2643), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/908 (54%), Positives = 639/908 (70%), Gaps = 38/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 16  MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 76  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 135

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 136 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 195

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 196 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 255

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L    E   G+K EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 256 VQSVFDTDLFRTLTGTIEDTIGVKAEG--SASHRVIADHLRSSAFLIADGVLPSNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 314 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 373

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 374 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDIAGFT 432

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 433 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYDT----------------- 475

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GD G    D  
Sbjct: 476 ------EAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 529

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G++R   ++ +T+D+  R +L  NHSATHLLH AL  
Sbjct: 530 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 589

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T  ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 590 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 649

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 650 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 709

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 710 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 769

Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +            ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 770 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 829

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S++ KAS ++ VT DL++R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 830 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 889

Query: 889 IAGVASFL 896
           I  VA  L
Sbjct: 890 IEAVALAL 897


>gi|205830239|sp|Q2K7T4|SYA_RHIEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 884

 Score = 1021 bits (2641), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/908 (54%), Positives = 639/908 (70%), Gaps = 38/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L    E   G+K EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGTIEDTIGVKAEG--SASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDIAGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYDT----------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GD G    D  
Sbjct: 461 ------EAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QK+ EG+FVH   V  G++R   ++ +T+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T  ELK +ED  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 754

Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +            ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 755 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S++ KAS ++ VT DL++R++AVDL R+++  LGG GGGGRP MAQ+GGP+G+KAD+A
Sbjct: 815 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 874

Query: 889 IAGVASFL 896
           I  VA  L
Sbjct: 875 IEAVALAL 882


>gi|299131739|ref|ZP_07024934.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298591876|gb|EFI52076.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 888

 Score = 1021 bits (2640), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/908 (53%), Positives = 619/908 (68%), Gaps = 38/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSGFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED+EAF LWKKI+GL   +I+RI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYAEDDEAFGLWKKIAGLPESRIVRIGTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +PGG PGS  E+G+R+IEIWNLVFMQF+Q     R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFDQIAPGNRNPLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +TG    G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAISDLTGADPHGAQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+ AL  EMG AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVWALVREMGQAYPELVRAEALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+ G+D+ SF 
Sbjct: 361 KTLDRGLAILDEKSAALHKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-GVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G    EKIWF L+E+ GAT+F+GYD                  
Sbjct: 420 DAMERQKAKARASWAGSGDTAAEKIWFPLREELGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  VE   +G    VV +QTPFY E+GGQ+GDTG   GDG 
Sbjct: 463 ------EIAEGVVTALVKDGASVESLKAGDAASVVLNQTPFYGESGGQVGDTGVLTGDGG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R ++TD QKKA  +FVH   +E+G L+    L L +D+  R  +  NHSATHLLH AL 
Sbjct: 517 VRFRVTDTQKKAGDLFVHIGQLEQGTLKKGAPLQLEVDHARRGAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS ++P+ LRFD  H+KPIT  EL  IED  NDI+ +N  V TR+M  ED
Sbjct: 577 QVLGDHIAQRGSLVSPERLRFDFAHTKPITPDELSRIEDIANDIVLENGEVTTRLMGIED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A +SGA AL G KY D VRVVS+    G     S  LCGGTHV  TG+I L+ I  ES++
Sbjct: 637 ARSSGARALFGEKYGDEVRVVSMGQGSGNALGWSVELCGGTHVRRTGDIGLVSITGESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ AR       +  K+ A+ LK +  ++  R+  + EE +KL+  L  
Sbjct: 697 ASGVRRIEALTGRAARQAANHSIQTAKTAAAELKTTLEDMPVRIAALIEERKKLERDLSE 756

Query: 775 AKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           A++KL                   + DV  ++  +  V+ K+LKS+ D  +K+I SG++ 
Sbjct: 757 ARKKLAMGGGGSAGGAAAASDVRSVGDVKLLARAVQGVEVKDLKSLADQGKKQIGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LV  S++ KASV++ VT DL  RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD
Sbjct: 817 LVATSEDGKASVVVGVTPDLTSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 876

Query: 887 QAIAGVAS 894
            A+  + +
Sbjct: 877 AALKAIEA 884


>gi|222148884|ref|YP_002549841.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735870|gb|ACM36833.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 887

 Score = 1021 bits (2639), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/909 (53%), Positives = 646/909 (71%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+ NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSTFLDYFKTNGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+EF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EAF LWKKI+GL  +KIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DRDKLCVTVYHTDDEAFGLWKKIAGLPEEKIIRIGTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  K++R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQVTKEQRVDLPRPSIDTGMGLERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI AS  +TG+  EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFRALIDASVDLTGVPAEGERRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P++  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAELLGSRDPMIYKLLPVLVQQMGRAYPELVRAEALISETLKLEENRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K + ++G+ AFKLYDT+G PLD+ QD L ARG+ G+DI  FN
Sbjct: 361 KTLERGLSLLSDATATLNKGDSIDGETAFKLYDTYGFPLDLTQDALRARGI-GVDITGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA   G G    E +WF LK+K+GAT+F+GY                   
Sbjct: 420 DAMQRQKAEARASWSGSGDKAMETVWFELKDKHGATEFLGYSA----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       ++A+V+ G ++E+A +G+ V+VV +QTPFY E+GGQ+GDTG  +GDG 
Sbjct: 463 ------ESAEGEIQALVRDGAVIEQATAGENVQVVVNQTPFYGESGGQVGDTGEIVGDGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++ D  KK EG+FVH A V  G +R    + L +D+  R +L  NHSATHLLH AL  
Sbjct: 517 VLEVRDTLKKGEGLFVHVATVREGTVRAGTVVALNVDHARRSRLRANHSATHLLHEALRD 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS + P+ LRFD++H KP+T+ ELK +ED  N+II QN  V TR+M  +DA
Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHPKPVTAEELKIVEDMANEIIVQNAAVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHVS+TG+I L+ +V+ES
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTVVRGPKAGRPYSIELCGGTHVSATGDIGLVRLVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG+ AR++L  QDE++K+LAS LKV   +VV RVE + +E RKL  +L
Sbjct: 697 AVGAGVRRIEALTGESARAYLAEQDERVKALASALKVQPVDVVSRVEALVDERRKLEREL 756

Query: 773 IHAKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +      + F+   ++ +D K+LK + D  +  + SG+++L+
Sbjct: 757 ADAKRKLAMGGGSTGAADVPRELGGIKFIGKQLAGIDPKDLKGMADEAKSVLGSGVVLLI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            ++++ KAS +  VT DL  + +AVDL R+++  LGG GGGGRP MAQ+GGP+G KAD A
Sbjct: 817 AVAEDGKASAVASVTGDLTSKVSAVDLVRIASSALGGKGGGGRPDMAQAGGPDGAKADDA 876

Query: 889 IAGVASFLK 897
           I  VA  ++
Sbjct: 877 IEAVAKAIE 885


>gi|209884575|ref|YP_002288432.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872771|gb|ACI92567.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 909

 Score = 1017 bits (2629), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/908 (52%), Positives = 621/908 (68%), Gaps = 38/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 22  MSGVNEIRSSFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKLPYQR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L
Sbjct: 82  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKEFGL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EA  LWKKI+GL   K+IRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 142 PKDRLLVTVFSEDDEAASLWKKIAGLPDSKVIRIATSDNFWQMGDTGPCGPCSEIFFDHG 201

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +PGG PGS  E+G+R+IEIWNLVFMQFEQ     R  LP  SIDTGMGLERMA VLQ 
Sbjct: 202 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGGVRTPLPHPSIDTGMGLERMAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF  LI+A   +TG    G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 262 KHDNYEIDLFVALIRAISDLTGTDPHGPQKASLRVIADHLRASSFLIADGVLPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ L+EETL+ E+ RF 
Sbjct: 322 VLRRIMRRAMRHAQLLGAKEPLMYRLVWALVREMGQAYPELVRAESLVEETLKLEETRFR 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L   ++ +G+ AF LYDT+G PLD+ QD L  RG+  +D+ SF 
Sbjct: 382 KTLDRGLAILDEKSASLKPGDMFDGETAFTLYDTYGFPLDLTQDALRTRGIH-VDLASFT 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    EK+WF L E+ GAT+F+GYD                  
Sbjct: 441 DAMEQQKAKARASWAGSGDAAAEKVWFPLHEELGATEFLGYDT----------------- 483

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G +V+   +G    VV +QTPFY E+GGQ+GDTG   GDG 
Sbjct: 484 ------EIAEGVVTALVKDGAVVDSLNAGDAAAVVLNQTPFYGESGGQVGDTGILTGDGG 537

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R ++TD QKKA  +FVH   +E+G L+   +L L +D+  R  +  NHSATHLLH AL 
Sbjct: 538 VRFRVTDTQKKAGDLFVHVGTLEQGALKKGAALQLEVDHTRRGAIRANHSATHLLHEALR 597

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS ++P+ LRFD  H+KPI + EL+ IED  NDI+ QN  V TR+M  +D
Sbjct: 598 QVLGDHIAQRGSLVSPERLRFDFAHTKPIAADELRRIEDIANDIVLQNSEVTTRLMGLDD 657

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A +SGA AL G KY D VRVVS+    G     S  LCGGTHV  TG+I L+ I  ES++
Sbjct: 658 ARSSGARALFGEKYGDEVRVVSMGQTSGNALGWSVELCGGTHVKRTGDIGLVSITGESAV 717

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ AR       E  K+ A+ LK +  ++  RV  + EE +KL+  L  
Sbjct: 718 ASGVRRIEALTGRAARHAANHSIETAKAAAAELKTTLEDMPARVAALVEERKKLERDLSD 777

Query: 775 AKRKLQLNVEDL--------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           A++KL +                 + DV  ++  +  ++ K+LKS+ D  +K++ SG++ 
Sbjct: 778 ARKKLAMGGGAGGNGSTAASDVRNVGDVKLLARAVQGIEVKDLKSLADQGKKQLGSGVVA 837

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LV  S++ KASV++ VT DL  RFNAVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD
Sbjct: 838 LVATSEDGKASVVVGVTPDLTSRFNAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 897

Query: 887 QAIAGVAS 894
            A+  + +
Sbjct: 898 AALKAIEA 905


>gi|157369088|ref|YP_001477077.1| alanyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|157320852|gb|ABV39949.1| alanyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 892

 Score = 1015 bits (2625), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 20  KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 79

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 80  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFN 139

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W++  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 140 LPKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 199

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 200 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 259

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI A  +VTG     N   + RVI DH+RS +FL++DG+ 
Sbjct: 260 RIAAVLQHVNSNYEIDLFSKLIAAVAKVTGATDLDNK--SLRVIADHIRSCAFLVSDGVT 317

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + L+E+ L
Sbjct: 318 PSNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVL 377

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+++F +TL+RGL LLD  L++L + + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 378 KTEEDQFARTLERGLTLLDEELANL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 436

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + S+    GA+QF GYD          
Sbjct: 437 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSMIRVDGASQFSGYD---------- 479

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G+ V E  +G++  VV D+TPFY E+GGQ+GD 
Sbjct: 480 -------------HEQQQSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDK 526

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         +++D QK  + I  H   +  G L+    +   ID   R ++ +NHSATH
Sbjct: 527 GVLKAANADFEVSDTQKYGQAI-GHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATH 585

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++++ED VN  I +NLPV T
Sbjct: 586 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQT 645

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 646 EVMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 700

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG  A + L  Q++ L+ +A  +K    N+  +V  + +  R L+
Sbjct: 701 SESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALE 760

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +  V++K L++++D L+ ++ S II+
Sbjct: 761 KELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIV 820

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 821 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALP 878

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 879 AALDSVEAWV 888


>gi|191171366|ref|ZP_03032915.1| alanyl-tRNA synthetase [Escherichia coli F11]
 gi|190908300|gb|EDV67890.1| alanyl-tRNA synthetase [Escherichia coli F11]
          Length = 876

 Score = 1015 bits (2624), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    E+L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDATALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|190892008|ref|YP_001978550.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|190697287|gb|ACE91372.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 884

 Score = 1014 bits (2622), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/896 (54%), Positives = 638/896 (71%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+ E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L  A E   G+K EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGAIEDAAGVKAEG--SASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYDT----------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  
Sbjct: 461 ------EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR++L  QD+++K+LA+ LKV    V+ RVE + +E RKL  +L
Sbjct: 695 AVGAGVRRLEAVTGESARAYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754

Query: 773 IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|311105349|ref|YP_003978202.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760038|gb|ADP15487.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 874

 Score = 1013 bits (2620), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/912 (44%), Positives = 551/912 (60%), Gaps = 54/912 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y  
Sbjct: 1   MKS-SEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LP+  +DTGMGLER
Sbjct: 180 EIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ+  +NY+IDLF+HLI A+ + TG+K   +N  + +VI DH+R+ SFLI DG++P
Sbjct: 240 IAAVLQDVHSNYEIDLFQHLIAAAARETGIKNLEDN--SLKVIADHIRACSFLIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL      + + L+
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGDAYPELAATADRVAQVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +LD  L+++ K   L+G   F LYDT+G P+D+  DI   R L  
Sbjct: 358 QEEERFGETLEHGMRILDSALANVPKGGQLDGMTLFTLYDTYGFPVDLTADICREREL-D 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F  A+E QR +ARA           K+   L  +   T+F GY+ L         
Sbjct: 417 VDMAGFEVAMERQRDQARAAGK-------FKMAEGLSYEGADTRFEGYEKLELDGV---- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG
Sbjct: 466 ------------------KVTALYVDGTQVQQVKAGQSAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG+R  + D  K   G+F HH  +E G L    +L+  +D   R +   NHSATHL
Sbjct: 508 LLEADGVRFAVADTLKIQAGVFGHHGELESGTLSVGDTLLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS + PD  RFD     P+T+ ++  +E  VN  I  N P V +
Sbjct: 568 MHKALRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQ 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IVS
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEAITG  A + +  Q+  L  +A  L+ +  ++  R+ ++ E+ + L+ 
Sbjct: 682 EGGVAAGVRRIEAITGDNALAWVQNQNALLTQVAGMLRSTPADLPARIAQVQEQVKSLEK 741

Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + + +L     +        ++  +  ++  I +VD K L+ ++D L+ +++  +++
Sbjct: 742 DLEQSRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K SV+  VT DL  R  A DL    A  + GG GGGRP MA  GG +     
Sbjct: 802 LATGSADGKISVVGGVTADLTGRVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDLAALP 860

Query: 887 QAIAGVASFLKK 898
            AIA V  ++ +
Sbjct: 861 AAIASVQKWVDE 872


>gi|218701187|ref|YP_002408816.1| alanyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218371173|emb|CAR19004.1| alanyl-tRNA synthetase [Escherichia coli IAI39]
          Length = 876

 Score = 1013 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/910 (44%), Positives = 570/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLATGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ + S E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKSEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAVLP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|327190521|gb|EGE57615.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 884

 Score = 1013 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/896 (54%), Positives = 637/896 (71%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS+ E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ L  A E   G+K EG    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLTGAIEDAVGVKAEG--SASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYDT----------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  
Sbjct: 461 ------EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +++I+D QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES
Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL  +L
Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754

Query: 773 IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V ++   ++ VD K+LK + D  +  I SGI+ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|148256734|ref|YP_001241319.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|205829994|sp|A5EML9|SYA_BRASB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146408907|gb|ABQ37413.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
          Length = 896

 Score = 1012 bits (2617), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/916 (51%), Positives = 619/916 (67%), Gaps = 44/916 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS E +G+R+IEIWNLVFMQ+EQ     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKVWGGPPGSPEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +T    +G    + RVI DHLR+SSFLI+DG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPELI+A+ LI+ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEALIKETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   S L K ++ +GDVAF LYDT+G PLD+ QD L +RG++ +D  SF 
Sbjct: 361 KTLERGLAILDEKSSTLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGIS-VDQASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR++ARA   G G   TE +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQRAKARAAWAGSGEAATENVWFPLREKLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G  VE   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 463 ------ETAEGAVTALVKDGAEVEGLKAGESGAIVLNQTPFYGESGGQVGDTGVMSGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++ITD QKKA  +FVH   VE+G L+   +L L +D+  R  +  NHSATH+LH AL  
Sbjct: 517 RVRITDTQKKAGDLFVHIGTVEQGTLKLGAALQLEVDHGRRSAIRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS ++PD LRFD  H KPI++ EL  +ED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFAHPKPISAEELARVEDIANDVVLENAEVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEIMLL 708
             +GA AL G KY D VRVVS+                   S  LCGGTHV  TG+I L+
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDQASNAQASNAMGWSVELCGGTHVKRTGDIGLI 696

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SES++ +G+RRIEA+T + AR+H        K+ A+ L+ +   V  R+  + EE +
Sbjct: 697 AVTSESAVSSGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARIAALMEERK 756

Query: 769 KLQLIH--AKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           KL+     A++KL +              ++A V  M+  +  V+ K+LKS++D  +K++
Sbjct: 757 KLERELSDARKKLAMGGGAAAGGSASGIREVAGVKLMARAVEGVEMKDLKSLVDEAKKQL 816

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            SG++ +VG +++ KA V++ VT DL  RFNAV+L R +++ LGG GGGGRP MAQ+GGP
Sbjct: 817 GSGVVAIVGRAEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGP 876

Query: 881 NGNKADQAIAGVASFL 896
           +G+KA+ A+A + S +
Sbjct: 877 DGSKAEAALAAIESAI 892


>gi|209549551|ref|YP_002281468.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535307|gb|ACI55242.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 884

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/896 (55%), Positives = 634/896 (70%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A E+  G K +G    +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VQSVFDTDLFRTLIGAIEETMGAKAKG--SASHRVIADHLRSSAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELVRAEALISETLKLEEGRFR 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + LGK ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F 
Sbjct: 359 KTLERGLSLLSDATTDLGKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ AR+H  G G   TE IWF L+EK+GAT+F+GYD                  
Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYDT----------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+AIV++G   EE  +G KV++V +QTPFY E+GGQ+GDTG    D  
Sbjct: 461 ------ETAEGVVQAIVREGAAAEEVKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++I+D QKK EG+FVH  +V  G  +   ++VLT+D+  R +L  NHSATHLLH AL  
Sbjct: 515 RIEISDTQKKGEGLFVHSGVVVEGAFKAGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED  N+I+ QN  V TR+M+ +DA
Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSAVTTRLMSVDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+     G      +S  LCGGTHVS+TG+I L+ ++ ES
Sbjct: 635 IEEGAMALFGEKYGDEVRVVSMGTGVHGAKSNKPYSVELCGGTHVSATGQIGLIRVLGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E RKL+   
Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDERRKLEKEL 754

Query: 775 --AKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             AKRKL +         +  ++A V F+   IS VD K+LK + D  +  I SG++ L+
Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKFLGKSISGVDPKDLKGLADDGKTSIGSGVVTLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           G+S + KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 815 GVSDDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870


>gi|205830246|sp|A8GA09|SYA_SERP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 875

 Score = 1012 bits (2616), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W++  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI A  +VTG     N   + RVI DH+RS +FL++DG+ 
Sbjct: 243 RIAAVLQHVNSNYEIDLFSKLIAAVAKVTGATDLDNK--SLRVIADHIRSCAFLVSDGVT 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + L+E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+++F +TL+RGL LLD  L++L + + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEDQFARTLERGLTLLDEELANL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + S+    GA+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSMIRVDGASQFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G+ V E  +G++  VV D+TPFY E+GGQ+GD 
Sbjct: 463 -------------HEQQQSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         +++D QK  + I  H   +  G L+    +   ID   R ++ +NHSATH
Sbjct: 510 GVLKAANADFEVSDTQKYGQAI-GHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++++ED VN  I +NLPV T
Sbjct: 569 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG  A + L  Q++ L+ +A  +K    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +  V++K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 AALDSVEAWV 871


>gi|293604526|ref|ZP_06686931.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292817107|gb|EFF76183.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 874

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/912 (44%), Positives = 553/912 (60%), Gaps = 54/912 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y  
Sbjct: 1   MKS-SEIRRQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIFFD G  I GG PGS  E+G+RYIEIWNLVFMQFE+  +     LP+  +DTGMGLER
Sbjct: 180 EIFFDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAEGNMPRLPRPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A+ + TG+K   NN  + +VI DH+R+ SFLI DG++P
Sbjct: 240 IAAVLQGVHSNYEIDLFQKLIHAAARETGVKDLENN--SLKVIADHIRACSFLIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL      + + L+
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELASMADRVAQVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +LD  L+++ K  +L+G   F LYDT+G P+D+  DI   R +  
Sbjct: 358 QEEERFGETLEHGMRILDTALANVPKGGVLDGTTLFTLYDTYGFPVDLTADICRERDVE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID+  F  ++E QR +ARA           K+   L  +   T+F GY+ L         
Sbjct: 417 IDMPGFEVSMERQRDQARAAGK-------FKMAEGLSYEGADTRFEGYEKLELDNV---- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG
Sbjct: 466 ------------------KVTALYVDGTQVQQVQAGQNAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG+R  + D  K   G+F HH ++E G L    +L+  +D   R +   NHSATHL
Sbjct: 508 LLQADGVRFAVADTLKIQNGVFGHHGVLESGSLSVGDTLLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS +  +  RFD     P+T+ ++  +E  VN  +  N P V +
Sbjct: 568 MHKALRQVLGAHVQQRGSLVDAEKTRFDFAQDAPMTAEQIARVEAIVNAEVLANQPTVAQ 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IVS
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEAITG  A + +  Q+  L  +A  L+ +  +V  R+ ++ E+ + L+ 
Sbjct: 682 EGGVAAGVRRIEAITGDNALAWVQNQNALLTQIAGMLRSTPADVPARIAQVQEQIKALEK 741

Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + + +L     +        ++  +  ++  I +VD K L+ ++D L+ +++  +++
Sbjct: 742 DLEQSRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K SV+  VT DL DR  A DL    A  + GG GGGRP MA  GG +     
Sbjct: 802 LATGSADGKISVVGGVTADLTDRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDLAALP 860

Query: 887 QAIAGVASFLKK 898
            AIAGV  ++ +
Sbjct: 861 AAIAGVQKWVDE 872


>gi|317403428|gb|EFV83940.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 874

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/912 (43%), Positives = 548/912 (60%), Gaps = 54/912 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FF+  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y  
Sbjct: 1   MKS-SEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PAEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LP+  +DTGMGLER
Sbjct: 180 EIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF++LI A+ + TG+K   NN  + +VI DH+R+ SFLI DG++P
Sbjct: 240 IAAVLQHVHSNYEIDLFQNLIAAAARETGVKDLENN--SLKVIADHIRACSFLIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T P    L+P L  EMG AYPEL      + + L+
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTRPFFHRLVPDLVAEMGEAYPELAATAERVAQVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +LDG L+++ K   L+G   F LYDT+G P+D+  DI   R +  
Sbjct: 358 QEEERFGETLEHGMRILDGALANVPKGGQLDGTTLFTLYDTYGFPVDLTADICREREV-D 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F  A+E QR +ARA           K+   L  +   T+F GY+ L         
Sbjct: 417 VDMAGFEVAMERQRDQARAAGK-------FKMAEGLSYEGAETRFEGYEKLELDNV---- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GDTG
Sbjct: 466 ------------------KVTALYVDGTQVQQVQAGQSAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+R  + D  K   G+F HH  +E G L    +++  +D   R +   NHSATHL
Sbjct: 508 LLEAAGVRFAVGDTLKIQSGVFGHHGTLEEGKLAVGDTVLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS + PD  RFD     P+T+ ++  +E  VN  I  N P V +
Sbjct: 568 MHKALRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQ 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IVS
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVGRTGDIGLFKIVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEAITG  A + +  Q   L  +A  L+ +  ++  R+ ++ ++ ++L+ 
Sbjct: 682 EGGVAAGVRRIEAITGDNALAWVQNQSALLAQVAGMLRSTPADLPARISQVQDQVKQLEK 741

Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + + +L     +        ++  +  ++  I +VD K L+ ++D L+ +++  +++
Sbjct: 742 DLEQSRSKLAASAGNDLASSAAVEVKGIKLLAASIGDVDPKALRGMVDNLKDRLKPAVVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K SV+  VT DL +R  A DL    A  + GG GGGRP MA  GG +     
Sbjct: 802 LATGSADGKISVVGGVTADLTNRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDIAALP 860

Query: 887 QAIAGVASFLKK 898
            AIA V  ++ +
Sbjct: 861 AAIASVQKWVDE 872


>gi|187478846|ref|YP_786870.1| alanyl-tRNA synthetase [Bordetella avium 197N]
 gi|123514444|sp|Q2KY72|SYA_BORA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115423432|emb|CAJ49966.1| alanyl-tRNA synthetase [Bordetella avium 197N]
          Length = 873

 Score = 1010 bits (2612), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/912 (43%), Positives = 553/912 (60%), Gaps = 55/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+EK  Y  
Sbjct: 1   MKS-SEIRQKFLQFFQSKGHSIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKEKRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWELLTTVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PVEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER
Sbjct: 180 EIFYDHGPDIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A+ + TG++   +N  + +VI DH+R+ SFLI DG++P
Sbjct: 240 IAAVLQGVHSNYEIDLFQKLITAAARETGVQDLHDN--SLKVIADHIRACSFLIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  +MG AYPEL      + + L+
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTKPFFYRLVPDLVAQMGEAYPELANMAERVGQVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +LD  L+ + K  +L+G+  F LYDT+G P+D+  DI   R +  
Sbjct: 358 QEEERFGETLEHGMKILDVALAQVPKGGLLDGNTLFTLYDTYGFPVDLTADICREREVE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID+  F  A+E QR +ARA           K+   L  +   T+F GY+ L  S      
Sbjct: 417 IDMAGFEAAMERQRDQARAAGK-------FKMAEGLNYEGAQTRFEGYEQLELSG----- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+   G   ++  +GQ+  VV D TPFYAE+GGQ+GDTG
Sbjct: 465 -----------------AKVTALYVDGTQTDQVRAGQQAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + DG+R  + D  K   G+F HH ++E G+L+   +L+  +D   R +   NHSATHL
Sbjct: 508 LLVADGLRFAVADTLKVQAGVFGHHGLLEEGVLKVGDTLLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     R
Sbjct: 568 MHKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQAAQAR 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IVS
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RR+EAITG  A   +  Q+  L+  A  L+     +  R+ ++ ++ + L+ 
Sbjct: 682 EGGVAAGVRRVEAITGDNALVWVQEQNALLQRAAGVLRSPVAELPERIAQVQDQVKALEK 741

Query: 773 IHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + + +L         D S  +I  V  ++ +I++VD K L+ ++D L+ K++  I++
Sbjct: 742 DLEQARAKLAASAGNDLADKSAVEIKGVKVLAAVINDVDPKALRGMVDNLKDKLKPAIVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S++  VT D   +  A DL    A  + GG GGGRP MA  GG +     
Sbjct: 802 LAA-SADGKISLVGGVTADQTAKVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDVAALP 859

Query: 887 QAIAGVASFLKK 898
            AIA V  ++ +
Sbjct: 860 AAIASVQDWVNE 871


>gi|288940831|ref|YP_003443071.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896203|gb|ADC62039.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 867

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/902 (43%), Positives = 542/902 (60%), Gaps = 46/902 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + +R +FL++F++  HE + SS LIP NDPTL+FTN+GMV FK+ F G+E+     
Sbjct: 1   MTTSAELRASFLDYFEQRQHERVASSPLIPANDPTLLFTNAGMVQFKDAFLGRERRASNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT+   L
Sbjct: 61  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWDYLTRVLAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL++TV++ED+EA  +W K  G+   +  R    DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 PPERLWVTVFEEDDEAAGIWLKEIGVDPQRFSRCGAKDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+RY+EIWNLVFMQF +        LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PAIPGGPPGSPDEDGDRYVEIWNLVFMQFNRDADGNMTPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+HLI+A+ Q TG     +   + RVI DH+RS++FLI DG+ P NEGRGY
Sbjct: 241 VHSNYEIDLFRHLIEAAAQATGCTDLADK--SLRVIADHIRSTAFLITDGVTPGNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +   LG + P    L+  L  EMG AYPEL  ++  +E  ++ E+ERF 
Sbjct: 299 VLRRIMRRAIRHGYRLGCSTPFFHTLVEPLAREMGDAYPELRASQSHVERLVKLEEERFA 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ LLD  ++ L  D+ + G+  FKLYDT+G P+D+  DI   RGL  +D+  F 
Sbjct: 359 ETLEHGMRLLDEAIADLSGDQ-IPGETVFKLYDTYGFPVDLTADIARERGLT-LDVAGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E Q+ RARA S    + T +       +  G T F GYD ++               
Sbjct: 417 QAMERQKERARAASQFGSAQTLD------IQIQGETDFCGYDRVQ--------------- 455

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+ + GE  +   +G++  V+ D++PFY E+GGQ+GD G    +  
Sbjct: 456 --------EEATIVALYRGGESCDALEAGEEGLVILDRSPFYGESGGQVGDRGWLNTETA 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  + D QKK +G+ VH   VE G L     +   +D   RR  ++NHSATHLLH AL  
Sbjct: 508 RFGVQDTQKKGDGVLVHVGRVEEGALTVGDRVDARVDADRRRATALNHSATHLLHAALRE 567

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS + P+ LRFD +H +P++  +L +IE  VN  +  N  V TRIM+ EDA
Sbjct: 568 VLGPHVQQKGSLVGPERLRFDFSHFEPVSREQLLTIERMVNREVRANHLVETRIMSLEDA 627

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            ASGA AL G KY D+VRV+ +     G  S+ LCGGTHV + G+I L+ IVSE+ I AG
Sbjct: 628 KASGAMALFGEKYADQVRVLRM-----GEFSTELCGGTHVKAVGDIGLIKIVSETGIAAG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG  A   +   +E+L  LA  LK  + +V  RV ++ +  R+L+    + K 
Sbjct: 683 VRRIEAITGASALEWVEADEERLLRLAGLLKGGREDVDERVTQLIDRARRLEKEIEQLKA 742

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +               I  +  ++  +   D K L+  +D L+ K+ S +++L   S + 
Sbjct: 743 KAASSAGQDLAAQAIDIQGIKTLAARLDGADPKSLRVTLDQLKDKLGSAVVVLATES-DG 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT+DL DR  A DL R  A+ + GG GGGRP MAQ+GG +      A+  V  
Sbjct: 802 KVSLVAGVTKDLTDRLKAGDLIREVAEKV-GGKGGGRPDMAQAGGNDPAGLPAALELVPG 860

Query: 895 FL 896
           ++
Sbjct: 861 WV 862


>gi|306844100|ref|ZP_07476694.1| alanyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275543|gb|EFM57275.1| alanyl-tRNA synthetase [Brucella sp. BO1]
          Length = 885

 Score = 1009 bits (2608), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/894 (53%), Positives = 627/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSEDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRNGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|306840334|ref|ZP_07473106.1| alanyl-tRNA synthetase [Brucella sp. BO2]
 gi|306289733|gb|EFM60922.1| alanyl-tRNA synthetase [Brucella sp. BO2]
          Length = 885

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/894 (53%), Positives = 626/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 ITEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|293392770|ref|ZP_06637088.1| alanine-tRNA ligase [Serratia odorifera DSM 4582]
 gi|291424629|gb|EFE97840.1| alanine-tRNA ligase [Serratia odorifera DSM 4582]
          Length = 875

 Score = 1008 bits (2607), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAIAYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+   G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFNIWQNEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG     N   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLDNK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL   + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIGVMGPAADELKSQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR  S G G+      + SL    GA++F GYD          
Sbjct: 420 -VDEAGFEAAMEAQRRRARESS-GFGAD-----YNSLIRVDGASEFCGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +   + + A+ + G+ V+E  +G++  VV D TPFY E+GGQ+GD 
Sbjct: 463 -------------HDQQQAKITALFRDGQPVDEIHAGEEAVVVLDATPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   + +G+L+   S+   ID   R ++ +NHSATH
Sbjct: 510 GILKSAAAEFVVGDTQKYGQAI-GHQGKLAQGVLKVGDSVDALIDQVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++++ED VN  + +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRAVEDLVNQQVRRNLPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 EVMALDDAKEKGAMALFGEKYDDHVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIATLHQQSDLLQEVAHLVKGDGNNLSEKVRAVLDRTRTLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q    +         ++  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAALESASLSSKAKQVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + E K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + N   
Sbjct: 804 LATTA-EGKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGSDVNALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 AALDSVEAWV 871


>gi|260460847|ref|ZP_05809097.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259033424|gb|EEW34685.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 888

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/910 (51%), Positives = 635/910 (69%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F++ GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRREGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI  +    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDVASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  R ++ +D+  F 
Sbjct: 361 KTLVRGLGLLSEATETLTAGDMLDGETAFKLYDTYGFPLDLTQDALRQRSIS-VDLAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE +WFS++EK GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREKTGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V+A+V+ G+ V+ A  G  V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 463 ------EQAEGLVQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I+D QKKA+G+FVH   V  G ++   ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEISDTQKKADGLFVHLGTVASGTVKVGAAVELKVDHARRSRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD++H+KPI+  +L+ +E   N+I+ QN PV TR+++ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISPEDLEEVERMANEIVVQNGPVTTRLISVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL+   
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756

Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + + +L +   +          +A V F+  ++S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKMVSGVSPKDLKPLADAGKTSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KA  
Sbjct: 817 VGAGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAGD 876

Query: 888 AIAGVASFLK 897
           AIA V + L+
Sbjct: 877 AIAAVRAALE 886


>gi|317493956|ref|ZP_07952373.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918283|gb|EFV39625.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 875

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 572/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQIVESSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFNIWADEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI A+ +VTG     +   + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAATAKVTGATDLSSK--SLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  ++G  E     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGNMVGAKETFFYKLVAPLIEVMGPAADELKRQQSMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLSGD-TLDGETAFRLYDTYGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D I F +A+EEQR RAR  S G G+      + S+    GA++F GYD          
Sbjct: 420 -VDEIGFERAMEEQRRRARESS-GFGAD-----YNSMIRVDGASKFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   S V A+ + G+ V+   +G++  VV ++TPFYAE+GGQ+GD 
Sbjct: 463 -------------HNQQHSSVTALFRDGQAVDVLNAGEEGVVVLNETPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   +TD QK  + I  H   V +G ++   S+  TID   R ++ +NHSATH
Sbjct: 510 GELTAQGVSFVVTDTQKYGQAI-GHQGKVAQGSVKVGDSVEATIDEARRSRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS ++   LRFD +H + +   +++ +ED VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGDHVSQKGSLVSDRNLRFDFSHFEAMKPEQIRQVEDIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA A GA AL G KY++ VRV+S+     G  S+ LCGGTH   TG+I L  I 
Sbjct: 629 NIMDLEDAKAKGAMALFGEKYDESVRVLSM-----GDFSTELCGGTHARQTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+   AG+RRIEA+TG+ A + +    + L+  AS +K    +V  ++  + ++ R+L+
Sbjct: 684 SEAGTAAGVRRIEAVTGEGAIAVMHQDADALREAASLVKSDAHSVAEKIRAVMDKTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +  V++K L++++D L+ ++ SG+++
Sbjct: 744 KELQQLKDQQAAQESASLSSKAVDVKGVKLLVSQLDNVEAKMLRTMVDDLKNQLGSGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + E K S++  VT+DL D+  A +L  + A+ + GG GGGRP MA +GG +     
Sbjct: 804 LATTA-EGKVSLVAGVTKDLTDKVKAGELIGMVAQQV-GGKGGGRPDMAMAGGSDATALP 861

Query: 887 QAIAGVASFL 896
           QA+AGV +++
Sbjct: 862 QALAGVEAWV 871


>gi|17987072|ref|NP_539706.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23502078|ref|NP_698205.1| alanyl-tRNA synthetase [Brucella suis 1330]
 gi|62290112|ref|YP_221905.1| alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82700035|ref|YP_414609.1| alanyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|161619156|ref|YP_001593043.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843466|ref|YP_001627870.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189024350|ref|YP_001935118.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19]
 gi|225627671|ref|ZP_03785708.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|237815619|ref|ZP_04594616.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|254689421|ref|ZP_05152675.1| alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693906|ref|ZP_05155734.1| alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|254697556|ref|ZP_05159384.1| alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701941|ref|ZP_05163769.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|254704486|ref|ZP_05166314.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254706618|ref|ZP_05168446.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254710272|ref|ZP_05172083.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254730450|ref|ZP_05189028.1| alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256031766|ref|ZP_05445380.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256044851|ref|ZP_05447755.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061281|ref|ZP_05451431.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256159936|ref|ZP_05457654.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255167|ref|ZP_05460703.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|256257667|ref|ZP_05463203.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|256369625|ref|YP_003107135.1| alanyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168900|ref|ZP_05755711.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260546661|ref|ZP_05822400.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260565546|ref|ZP_05836030.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260566269|ref|ZP_05836739.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260754944|ref|ZP_05867292.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758160|ref|ZP_05870508.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761986|ref|ZP_05874329.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883954|ref|ZP_05895568.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|261214196|ref|ZP_05928477.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|261222364|ref|ZP_05936645.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261314078|ref|ZP_05953275.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261317834|ref|ZP_05957031.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261325289|ref|ZP_05964486.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261752508|ref|ZP_05996217.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261755167|ref|ZP_05998876.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758391|ref|ZP_06002100.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988865|ref|ZP_06101422.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|265991279|ref|ZP_06103836.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265998329|ref|ZP_06110886.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|297248508|ref|ZP_06932226.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|54039648|sp|P67009|SYA_BRUSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54042023|sp|P67008|SYA_BRUME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|75496699|sp|Q57CU0|SYA_BRUAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123547531|sp|Q2YRU8|SYA_BRUA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205829996|sp|A9M5L7|SYA_BRUC2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205829998|sp|B0CGZ9|SYA_BRUSI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17982730|gb|AAL51970.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23348036|gb|AAN30120.1| alanyl-tRNA synthetase [Brucella suis 1330]
 gi|62196244|gb|AAX74544.1| AlaS, alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616136|emb|CAJ11179.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|161335967|gb|ABX62272.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674189|gb|ABY38300.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189019922|gb|ACD72644.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19]
 gi|225617676|gb|EEH14721.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|237788917|gb|EEP63128.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|255999787|gb|ACU48186.1| alanyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260095711|gb|EEW79588.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260151614|gb|EEW86708.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260155787|gb|EEW90867.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260668478|gb|EEX55418.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672418|gb|EEX59239.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675052|gb|EEX61873.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260873482|gb|EEX80551.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260915803|gb|EEX82664.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260920948|gb|EEX87601.1| alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261297057|gb|EEY00554.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301269|gb|EEY04766.1| alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261303104|gb|EEY06601.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261738375|gb|EEY26371.1| alanyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261742261|gb|EEY30187.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261744920|gb|EEY32846.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|262552797|gb|EEZ08787.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|263002063|gb|EEZ14638.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661062|gb|EEZ31323.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|297175677|gb|EFH35024.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 885

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/894 (53%), Positives = 626/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|256113755|ref|ZP_05454559.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265995116|ref|ZP_06107673.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766229|gb|EEZ12018.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 885

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/894 (53%), Positives = 625/894 (69%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+A E+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRALEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|148560301|ref|YP_001259121.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|205829997|sp|A5VQX4|SYA_BRUO2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148371558|gb|ABQ61537.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 885

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/894 (53%), Positives = 628/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+  V  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDHVNALIDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L    +  D +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGDSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|294852536|ref|ZP_06793209.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294821125|gb|EFG38124.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 885

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/894 (53%), Positives = 626/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGLAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRDGVEVPSVREGETISVVANQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|225852697|ref|YP_002732930.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263812|ref|ZP_05466344.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641062|gb|ACO00976.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263093940|gb|EEZ17874.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409221|gb|ADZ66286.1| alanyl-tRNA synthetase [Brucella melitensis M28]
 gi|326538929|gb|ADZ87144.1| alanyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 885

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/894 (53%), Positives = 626/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKGKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|254714269|ref|ZP_05176080.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261322043|ref|ZP_05961240.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261294733|gb|EEX98229.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1]
          Length = 885

 Score = 1006 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/894 (53%), Positives = 625/894 (69%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+    V     G+ + VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+SE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|319404395|emb|CBI77998.1| Alanyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 887

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/910 (52%), Positives = 640/910 (70%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+ FL++F++NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSAFLDYFRRNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS +E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI AS+++TG+K  G  + +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIHASQEITGIKATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMKKLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+ V   L + + L+G+VAFKLYDT+G PLD+ QD L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEVSIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRCRGIS-VDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS+++K GAT+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A+V  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 463 ------EKAEGVITALVCDGEIVDHISSGQDAMLVVNQTPFYAESGGQVGDSGVISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ +G+F+H   V+ G  +    + L++D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQRRGDGVFIHIGEVKSGQAQISDCVELSVDSERRRKIRANHSATHLLHEALRC 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG H++Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V TR+M  +DA
Sbjct: 577 ILGPHIAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       E     S  LCGGTHV  TG+I L++IV ES
Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPTELTRHWSIELCGGTHVQRTGDIGLIHIVGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  N+  R+  + ++ RK +   
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756

Query: 774 -HAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + ++ + LN   L   K     I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NNTRKNVALNGGALQGRKEDITIINGISFMGGVLRNIAVRDLKALVDSGKKQIKSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLINMLNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|205830051|sp|B2IHX3|SYA_BEII9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 898

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/915 (51%), Positives = 619/915 (67%), Gaps = 43/915 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+ FDL
Sbjct: 61  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G    KIIRI T+DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 121 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ+   +R  LPK SIDTGMGLER+A +LQ 
Sbjct: 181 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A  Q TG+  +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +L+    HL +  +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+  F 
Sbjct: 361 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR+ AR    G G   T+  WF+L+E+ GAT F+GYD                  
Sbjct: 420 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++++AI+Q G+ V    +GQ   +V +QTPFY E+GGQ+GDTG  I  G+
Sbjct: 463 ------EKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ +  KK   +F+H  IVE G +   + +   +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD +H KP+T  E   IED  N +I +N PV T++M+ EDA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEIMLL 708
           + SGA AL G KY D VRVVS+ Y++               S  LCGGTHV+ TG+I LL
Sbjct: 637 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 696

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES++ AG+RRIEA TG  AR HL  Q   L SLA+ LK  +     R+  + EE R
Sbjct: 697 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 756

Query: 769 KL--QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL  +L  A++KL +     N  D    +I  + F    ++ V+ K+LKS+ D  ++ I 
Sbjct: 757 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SGI+ +VG+  + KASV++ VT+DL+DRF+AV L RL+A  LGG GGGGR  +AQ+GGP+
Sbjct: 817 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 876

Query: 882 GNKADQAIAGVASFL 896
           G  A+ A+  +   L
Sbjct: 877 GEAAEAALTAIEESL 891


>gi|163868621|ref|YP_001609830.1| alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|205829989|sp|A9IVY8|SYA_BART1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161018277|emb|CAK01835.1| Alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 888

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/911 (53%), Positives = 652/911 (71%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ +Y+ 
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHQVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQHLYKK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+WDLLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWDLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KISGL  +KI+RI T DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYQSDDVAAELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ +K+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQLSKEERVDLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI ASE++TG+K  G+ + +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRVLIGASEKITGIKATGDFVASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  LLPAL  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWQLLPALICEMGQAYPELVRAESLISETLKLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + + LNG+VAFKLYDT+G PLD+ QD+L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEESAKLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+  ARAH  G G   TE IWFS++++ G T+F+GY+                  
Sbjct: 420 KAMERQKEEARAHWSGSGEAVTETIWFSVRDQVGVTEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A+V  G+IV+E  SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 463 ------EKAEGIITALVCDGKIVDEVSSGQKAILVLNQTPFYGESGGQIGDSGIISGEDF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+F+H   V+ G  +    + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 IFEVHDTQKKADGVFIHLGKVKSGHAKISDCVQLTVDVVRRKKIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++P+ LRFD +H K ++  ELK IED  N+I+ QN  V TR+M  ++A
Sbjct: 577 VLGSHVTQKGSLVSPERLRFDFSHPKSVSLEELKKIEDLANEIVLQNNKVTTRLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY--EDGGV---HSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+    E GG+    S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYEDEVRVVSMGAPLEQGGLKKHWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG  AR +L  QD +++ ++  LK S  ++  RV  + +E RK +   
Sbjct: 697 SVSAGVRRIEALTGAAARLYLCRQDVRIREISDLLKTSSSDLEERVRSLLDERRKFEKEL 756

Query: 775 --AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++K+ LN +     +     I  ++FM HI+  +  ++LK+++DA +K+I SG++  
Sbjct: 757 NDVRKKMVLNGKITESGQGDITIINGLSFMRHIVKNILPRDLKALVDAGKKQIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + IS++ K S ++ VT+DL D+ NAVDL R+ + VLGG GGGGR  MAQ+GGP+GNKA++
Sbjct: 817 ITISEDGKGSAVVGVTDDLTDKLNAVDLVRILSNVLGGQGGGGRSDMAQAGGPDGNKANE 876

Query: 888 AIAGVASFLKK 898
           A A +  FL+K
Sbjct: 877 AFAALKDFLEK 887


>gi|182679359|ref|YP_001833505.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635242|gb|ACB96016.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 901

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/915 (51%), Positives = 619/915 (67%), Gaps = 43/915 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 4   MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+ FDL
Sbjct: 64  ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G    KIIRI T+DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 124 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 183

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ+   +R  LPK SIDTGMGLER+A +LQ 
Sbjct: 184 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A  Q TG+  +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 244 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPL+  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 304 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +L+    HL +  +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+  F 
Sbjct: 364 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 422

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR+ AR    G G   T+  WF+L+E+ GAT F+GYD                  
Sbjct: 423 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYDT----------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++++AI+Q G+ V    +GQ   +V +QTPFY E+GGQ+GDTG  I  G+
Sbjct: 466 ------EKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 519

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ +  KK   +F+H  IVE G +   + +   +D+  R  +  NHSATHLLH AL  
Sbjct: 520 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 579

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD +H KP+T  E   IED  N +I +N PV T++M+ EDA
Sbjct: 580 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 639

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEIMLL 708
           + SGA AL G KY D VRVVS+ Y++               S  LCGGTHV+ TG+I LL
Sbjct: 640 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 699

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES++ AG+RRIEA TG  AR HL  Q   L SLA+ LK  +     R+  + EE R
Sbjct: 700 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 759

Query: 769 KL--QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL  +L  A++KL +     N  D    +I  + F    ++ V+ K+LKS+ D  ++ I 
Sbjct: 760 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 819

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SGI+ +VG+  + KASV++ VT+DL+DRF+AV L RL+A  LGG GGGGR  +AQ+GGP+
Sbjct: 820 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 879

Query: 882 GNKADQAIAGVASFL 896
           G  A+ A+  +   L
Sbjct: 880 GEAAEAALTAIEESL 894


>gi|319784062|ref|YP_004143538.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169950|gb|ADV13488.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 888

 Score = 1004 bits (2597), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/902 (52%), Positives = 634/902 (70%), Gaps = 37/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRKEGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            +T QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T+EF L
Sbjct: 61  ASTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 SKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDAASSAIGHGPDKETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  R ++ +D   F 
Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRSIS-VDTAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE IWFS++EK GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWAGSGDAATETIWFSVREKAGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I++A+V+ G+ V+ A  G  V +V +QTPFYAE+GGQ+GDTG   G+G 
Sbjct: 463 ------EAAEGIIQALVRDGKAVDGAGKGDAVAIVVNQTPFYAESGGQMGDTGVISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++++D QKKA+G+FVH   V  G ++T  ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEVSDTQKKADGLFVHIGKVASGTVKTGAAVELKVDHARRSRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS + P+ LRFD++H+KPI++ +L+ +E   N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHNKPISAEDLEEVERMANEIVVQNGPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL+   
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756

Query: 774 -HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A++KL L          +   +A V F+   +S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGSSADAPAANETVAGVGFLGKTVSGVSPKDLKPLADAGKTSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KAD 
Sbjct: 817 VGSGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKADD 876

Query: 888 AI 889
           AI
Sbjct: 877 AI 878


>gi|254719259|ref|ZP_05181070.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984258|ref|ZP_06096993.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838009|ref|ZP_07470867.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662850|gb|EEZ33111.1| alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406933|gb|EFM63154.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 885

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/894 (53%), Positives = 625/894 (69%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNLITREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   FN
Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ ++V+ G  V     G+ + VV +QTPFY E+GGQ GDTG   G+  
Sbjct: 463 ------ESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEDF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D QKK EG+FVH   V +G  +    + L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
            + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL  +L
Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756

Query: 773 IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L             +  VNF+  I++ V   +LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVLPHDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGTGGGGRPDMAQAGGPDG 870


>gi|90423082|ref|YP_531452.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|122476792|sp|Q218Q3|SYA_RHOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|90105096|gb|ABD87133.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 890

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/912 (51%), Positives = 628/912 (68%), Gaps = 40/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNEIRSAFLNYFGKDGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKERLLVTVFSEDDEAFALWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS E +G+R+IEIWNLVFMQF+Q    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPEEDGDRFIEIWNLVFMQFDQIAPGQRNPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF+ LI+A  ++TG   +G +  + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFQALIRAIAELTGADPKGEHKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG TEPLM  L+ AL  EMG AYPEL++A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGATEPLMWRLVWALVREMGQAYPELVRAEPMIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL++LD   S L K ++ +G+ AF LYDT+G PLD+ QD L  RG++ +DI SF 
Sbjct: 361 KTLDRGLIILDEKSSTLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L+E+ GAT+F+GY+                  
Sbjct: 420 DAMDRQRAKARASWAGSGDTATETVWFGLREQLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G+ V++   G+   +V +QTPFYAE+GGQ+GDTG   G+G+
Sbjct: 463 ------ETAEGVVAALVKDGQKVDQLKVGEAGAIVLNQTPFYAESGGQVGDTGVMTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE+G L  + +L+L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTETQKKAHDLFVHLGTVEQGTLTPDTALLLEVDHTRRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS +  D LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAEDRLRFDFVHQKPISADELRRVEDIANEVVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV++         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVTMGKSARQHGSNALGWSVELCGGTHVRRTGDIGLISITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR       +  K+ A+ L+ S  ++  RV  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRFARQSANAAIDTAKATAAELRTSVDDMPARVAALMDERKKLERE 756

Query: 774 HAKRKLQL---------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A+ + +L            +    ++  V  ++  +  ++ K+LKS++D  +K++ SG+
Sbjct: 757 LAEARKKLAMGGGGAAAANGEAGVREVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I LV  S + K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 IALVATSADGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876

Query: 885 ADQAIAGVASFL 896
           A  A+  +A  +
Sbjct: 877 AQAALDAIAEAI 888


>gi|239832092|ref|ZP_04680421.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824359|gb|EEQ95927.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 885

 Score = 1003 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/894 (54%), Positives = 628/894 (70%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDEAISFAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   ++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K +G    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKADGELRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPELI+A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPTLIREMGQAYPELIRAEALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   F+
Sbjct: 361 KTLDRGLGLLSDATENLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTDGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMERQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  V+ A  G+ V VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------ESAEGVVAALVRDGAEVQSASEGEVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QKK EG+FVH   V +G ++T  ++ L +D   R ++  NHSATHLLH AL  
Sbjct: 517 VIAIKDTQKKGEGVFVHIGEVAKGTVKTGDAVELKVDSARRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV+Q GS + PD LRFD +H KPI++ EL  +E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELAKVENLANEIILQNAPVSTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QDE++K++A  LK +    + RV  + +E +KL  +L
Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPAEALERVNALLDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ ++ KAS +  VTEDLL RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GVGEDDKASAVAAVTEDLLGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870


>gi|154253021|ref|YP_001413845.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|154156971|gb|ABS64188.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 913

 Score = 1003 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/911 (49%), Positives = 607/911 (66%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ +LEFF+  GHE++ S  L+P NDPTL+FTN+GMVPFKN+FTGQE   Y+ 
Sbjct: 22  MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K  AI+ AWDL+TKE  L
Sbjct: 82  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +T+Y++D+EA  LWKKI+GLS DKI+R+    NFW M +TGPCGP SEIF+D G
Sbjct: 142 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 201

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQ+EQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 202 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI AS + +    +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY
Sbjct: 262 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+L+G  EPLM  L+PAL  +MG AYPEL +A+ L+ ETLR E+ RF 
Sbjct: 322 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD  +  LG   +L G+VAFKLYDT+G PLD+ QD L +RG++ +D   F+
Sbjct: 382 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR  ARA   G G   TE +WF L++K GAT+F+GY+                  
Sbjct: 441 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYES----------------- 483

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDG 538
                       V A++  G+ V++  +G    ++ +QTPFYAE+GGQ+GDTG     DG
Sbjct: 484 ------EIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 537

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D  KK   + VH   + RG L+    + + +D   R     NHSATHLLH AL 
Sbjct: 538 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 597

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + P+ LRFD +H KP+T  E+  +E  VN +I QN  V TR+M  ED
Sbjct: 598 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 657

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AIA+GA AL G KY + VRV+++  +D    G +S  LCGGTHV   G+I +  IVSES+
Sbjct: 658 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 717

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG+ AR++L+ QD   K  AS L++S  ++  RV  + EE ++L+   A
Sbjct: 718 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 777

Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           + K QL +        ++    +   V  ++  +  V+ K+L+ ++D  +K++ SG+++L
Sbjct: 778 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 837

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V IS++ K ++ + VT+DL  R+NAV+L +  A  +GG GGGGRP MAQ+GGP   KAD 
Sbjct: 838 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 897

Query: 888 AIAGVASFLKK 898
           A+  V + + +
Sbjct: 898 ALDAVKAAVGE 908


>gi|319405869|emb|CBI79501.1| Alanyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 889

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/912 (51%), Positives = 637/912 (69%), Gaps = 39/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F++NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNNIRSTFLDYFRRNGHEIISSSPLVPRNDPTLMFTNAGMVQFKNVFTGFEQCPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L ITVY  D  A +LW+KISGL  +KIIRITTNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLITVYHTDNIAAELWRKISGLPNEKIIRITTNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 GEIFGGPPGSADEDGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF  LI AS+++TG+K  G  I +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDTDLFCKLISASQEITGVKATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKELLMEQLLPVLIREMGQAYPELVRAEALISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  +G+VAFKLYDT+G PLD+ QD L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDIEAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS++++ G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASVTETIWFSIRDQVGTTEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A++  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 463 ------EKAEGVITALICDGEIVDHISSGQDAMLVVNQTPFYAESGGQIGDSGVISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ +G+F+H   V+ G  +    + LT+D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVRDTQRRGDGVFIHIGKVKSGQAKISDCVELTVDSERRRKIRANHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V TR+M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSQVTTRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           +  GA AL G KY D VRVVS+      +      S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 VFEGAVALFGEKYGDEVRVVSMGERCEPIALKKHWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK+S  N+  RV  ++ + RK +   
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEIASFLKISPANLEERVRNLFNDRRKFEKEL 756

Query: 775 AK---------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                      + LQ    +++   I  ++FM  ++  +  ++LK+++D+ +K+I+SG++
Sbjct: 757 NNTRKNVVLNGKALQGRKGEITTININGISFMGGVLRNIAIRDLKTLVDSGKKQIKSGVV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             V +S++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KA
Sbjct: 817 AFVSVSEDGKGSAVVGVTDDLINMLNAVDLVRIVSVVLGGQGGGGRPDMAQAGGSKGDKA 876

Query: 886 DQAIAGVASFLK 897
           ++AI  + +FLK
Sbjct: 877 EEAITALKAFLK 888


>gi|75675479|ref|YP_317900.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|123613615|sp|Q3ST43|SYA_NITWN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|74420349|gb|ABA04548.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 891

 Score = 1002 bits (2590), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAANGHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+ AF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLTATVYIDDDGAFDLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS E +G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DRIPGGPPGSPEQDGDRFVEIWNLVFMQYEKLPDGSRPNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+D+ SF 
Sbjct: 361 KTLERGLSILDEKSASLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ GE  +   +G+   +V +QTPFY E+GGQ+GDTG  I DG+
Sbjct: 463 ------EAAEGVVAALVKDGEEADTLKAGESGAIVLNQTPFYGESGGQVGDTGFLIADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD QKKA  +FVH   VE+G+L   M+L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTQKKAGDLFVHLGTVEQGVLAPGMALALEVDHDRRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISADELRCIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+   D           S  LCGGTHV  TG+I L+ +V 
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGTDRHGAASNALGWSVELCGGTHVKRTGDIGLISVVG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG +AR H     +  K+ A  L+ S  ++  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGHQARHHANHAIQLAKTAAGELRTSLDDMPARIASLMEERKKLER 756

Query: 773 I--HAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               A++KL +       +        +  +  M+  +  ++ K+LKS+ D  +K++ SG
Sbjct: 757 ELSEARKKLAMGGAASASSGATTGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|300722254|ref|YP_003711538.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297628755|emb|CBJ89333.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 875

 Score = 1001 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVPSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  K F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYDIWHKEVGVPTERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI +   VTG     N   + RV+ DH+R+ +FLI DG++
Sbjct: 243 RITAVLQHVNSNYEIDLFQSLIASVADVTGATDLTNK--SLRVVADHIRACAFLICDGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL Q + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIKIMGAAGEELKQQQALVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR  S G G+      +  L +  G++ F GY+          
Sbjct: 420 -VDEAGFEMAMENQRRRARESS-GFGTD-----YNELIKVDGSSDFCGYE---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   +IV AI + GE VE+  +G++  V+ D+T FYAE+GGQ GD 
Sbjct: 463 -------------HNSQQAIVTAIFRNGESVEQIHAGEEAVVILDKTAFYAESGGQAGDM 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +      ++ D QK A+ +  H   +  GIL    ++   ID   R  + +NHSATH
Sbjct: 510 GHLLNSDGVFEVLDTQKYAQ-VIGHIGKLTSGILAVNHTVNAEIDVVRRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HV+Q GS +    LRFD +H + + S +++ +E+ VN+ I +N PVVT
Sbjct: 569 LLHAALRQILGEHVAQKGSLVNDKYLRFDFSHFEAMKSEQIRQVENLVNEEIRKNSPVVT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  EDA + GA AL G KY+++VRV+S+     G  S+ LCGGTH S TG+I +  I 
Sbjct: 629 ELMALEDAKSKGAMALFGEKYDEKVRVLSM-----GGFSTELCGGTHASRTGDIGVFRIS 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITGQ A   +  Q + L+ +A  +K    ++  +V+   +  ++L+
Sbjct: 684 SESGTAAGIRRIEAITGQTALDAIYQQTDLLQDIAHLVKGDISSLNEKVKTTLDRMKQLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   + +V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S+++ +T+DL  +  A DL    A+ + GG GGGRP +AQ+GG +     
Sbjct: 804 LSTVAGD-KVSLIVGITKDLTAKIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVTALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 TALASVEEWV 871


>gi|205830263|sp|A7HWA5|SYA_PARL1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score = 1001 bits (2588), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/911 (49%), Positives = 607/911 (66%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ +LEFF+  GHE++ S  L+P NDPTL+FTN+GMVPFKN+FTGQE   Y+ 
Sbjct: 1   MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K  AI+ AWDL+TKE  L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +T+Y++D+EA  LWKKI+GLS DKI+R+    NFW M +TGPCGP SEIF+D G
Sbjct: 121 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQ+EQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI AS + +    +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY
Sbjct: 241 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+L+G  EPLM  L+PAL  +MG AYPEL +A+ L+ ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD  +  LG   +L G+VAFKLYDT+G PLD+ QD L +RG++ +D   F+
Sbjct: 361 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR  ARA   G G   TE +WF L++K GAT+F+GY+                  
Sbjct: 420 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYES----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDG 538
                       V A++  G+ V++  +G    ++ +QTPFYAE+GGQ+GDTG     DG
Sbjct: 463 ------EIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D  KK   + VH   + RG L+    + + +D   R     NHSATHLLH AL 
Sbjct: 517 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + P+ LRFD +H KP+T  E+  +E  VN +I QN  V TR+M  ED
Sbjct: 577 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AIA+GA AL G KY + VRV+++  +D    G +S  LCGGTHV   G+I +  IVSES+
Sbjct: 637 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG+ AR++L+ QD   K  AS L++S  ++  RV  + EE ++L+   A
Sbjct: 697 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 756

Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           + K QL +        ++    +   V  ++  +  V+ K+L+ ++D  +K++ SG+++L
Sbjct: 757 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V IS++ K ++ + VT+DL  R+NAV+L +  A  +GG GGGGRP MAQ+GGP   KAD 
Sbjct: 817 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 876

Query: 888 AIAGVASFLKK 898
           A+  V + + +
Sbjct: 877 ALDAVKAAVGE 887


>gi|85715195|ref|ZP_01046179.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85698110|gb|EAQ35983.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 892

 Score = 1001 bits (2588), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/902 (51%), Positives = 613/902 (67%), Gaps = 42/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL FF  N H+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNFFAANDHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLTATVYIDDDEAFDLWKKIAGLPESRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ+E+ +   R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DRIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLSDGSRPNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG AYPEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAYPELQRARSLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+D+ SF 
Sbjct: 361 KTLDRGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDLASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G    E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+VQ G+  +   +G+   +V +QTPFY E+GGQ+GDTG    DG+
Sbjct: 463 ------ESAEGVVVALVQDGKETDILKAGESGAIVLNQTPFYGESGGQVGDTGALTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QKKA  +FVH  IVE+G+L   M+L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 CFRVTDTQKKAGDLFVHLGIVEQGVLAPGMALALEVDHDRRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI+  EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISGDELRRIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+          +    S  LCGGTHV  TG+I L+ ++S
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGAGRQGAPSNALGWSVELCGGTHVKRTGDIGLISVIS 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG RAR H     +  K+ A  L+ S  ++  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGHRARHHANDAIQLAKTAAGELRTSLDDMPARIAALVEERKKLER 756

Query: 773 I--HAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               A++KL +        +        +  +  M+  +  ++ K+LKS+ D  +K++ S
Sbjct: 757 ELSEARKKLAMGGGAASASSGAATGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGS 816

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G++ LV  S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G
Sbjct: 817 GVVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDG 876

Query: 883 NK 884
            K
Sbjct: 877 AK 878


>gi|153009317|ref|YP_001370532.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|205830165|sp|A6X0E9|SYA_OCHA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151561205|gb|ABS14703.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 885

 Score = 1001 bits (2588), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/894 (54%), Positives = 625/894 (69%), Gaps = 36/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++++KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYYRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   ++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI+ASE+ TG+K EG    +HRVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGEFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRADALISETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LL      L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D   F+
Sbjct: 361 KTLDRGLGLLSDATESLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTDGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+                  
Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A+V+ G  V+ A  G  V VV +QTPFY E+GGQ GDTG   G+G 
Sbjct: 463 ------EVAEGVITALVRDGAEVQSAAEGDVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QKK EG+FVH   V +G  +T  ++ L +D   R ++  NHSATHLLH AL  
Sbjct: 517 AIAIKDTQKKGEGVFVHIGEVTKGTAKTGDAVELKVDSVRRTRIRSNHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV+Q GS + PD LRFD +H KPI++ EL  +E+  N+II QN PV TR+M  +DA
Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELTQVENLANEIILQNAPVSTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ IVSE 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RR+EA+TG+ AR +L  QDE++K++A  LK +    + RV  + +E +KL  +L
Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPSEALERVNALLDERKKLEREL 756

Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A++KL L         +   +  VNF+  I++ V  ++LK + D  +K++ SG+++ +
Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           GI ++ KAS +  VTEDL+ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 817 GIGEDSKASAVAAVTEDLVGRFSAVDLVRAASVALGGAGGGGRPDMAQAGGPDG 870


>gi|163759600|ref|ZP_02166685.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283197|gb|EDQ33483.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 884

 Score = 1001 bits (2587), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/895 (53%), Positives = 631/895 (70%), Gaps = 35/895 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KN HE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNEIRSAFLDYFKKNEHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYTT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+LAW+LLT+EF +
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIELAWNLLTREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL +TVY  D++AF LW+KI+G+   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 NKERLLVTVYHTDDDAFDLWRKIAGVPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQLTVDERVDLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLF+ LI ASE++TG+  EG+   +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLFRRLIMASEELTGVSAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  LLP L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMYKLLPTLVAEMGRAYPELTRAEALISETLKLEETRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD   + LG+ + L G+ AFKLYDT+G PLD+ QD L  RG+  +D   F 
Sbjct: 361 KTLERGLSLLDEASADLGEGDRLGGETAFKLYDTYGFPLDLTQDALRQRGIE-VDTDGFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARAH  G G   TE +W+ +K++ GAT F+GYD                  
Sbjct: 420 AAMERQKAEARAHWSGSGDKATETVWYEIKDRVGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +++A+V+ G  V  A +G+ V+VV +QTPFY E+GGQ+GD G   G+G 
Sbjct: 463 ------EIAEGVIQAMVRDGAEVAAAKAGESVDVVVNQTPFYGESGGQMGDQGIISGEGY 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           RL+++D QK+ EG+FVH A+V  G ++      L + +  R ++  NHSATHLLH AL  
Sbjct: 517 RLEVSDTQKRGEGLFVHRAVVAEGEVKAGAVAQLDVAHSRRAKIRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFDV+H KP+T+ EL  +E   N+II QN PV TR+M  +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELSEVETMANEIILQNSPVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     GV     +S  LCGGTHV++TGEI L+ ++S+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVRGVKANRPYSVELCGGTHVAATGEIGLVRVLSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR HL  QDEKL+  AS LKV  G+VV R+E + +E +K++   
Sbjct: 697 AVSAGVRRIEAVTGEAARQHLSEQDEKLRQAASLLKVQPGDVVSRIEALMDERKKMEREL 756

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + + +L +            I  V F+  +++ V  K+LK ++DA +  + SG+   V 
Sbjct: 757 TEARKKLALGGGGAGGDESRDIGGVKFLGKVVNGVQPKDLKGLVDAAKTSLGSGVAAFVA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           IS++ KASV++ VTEDL  + +AVDL R++++ +GG GGGGRP MAQ+GGP+G K
Sbjct: 817 ISEDGKASVVVGVTEDLTSKLSAVDLVRVASQAIGGKGGGGRPDMAQAGGPDGAK 871


>gi|294634755|ref|ZP_06713284.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291091814|gb|EFE24375.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 875

 Score = 1001 bits (2587), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L Q +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPQEKLWVTVYESDDEAYNIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI  + +V G+    +   + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVDDLSSK--SLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKESFFYKLVAPLIQVMGSAADELARQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L   + L+G+ AF+LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELAQL-DGDTLDGETAFRLYDTYGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F +A+E QR RAR  S G G+      + SL    G+T F GY           
Sbjct: 420 -VDEVGFEKAMEAQRRRARESS-GFGAD-----YNSLIRVEGSTDFTGYQ---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ + G+ V+   +G++  VV DQTPFYAE+GGQ+GD 
Sbjct: 463 -------------RQQQMATITALFRNGQAVDALQAGEEGVVVLDQTPFYAESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  + I  H   V +G L+   SL  +ID   R ++ ++HSATH
Sbjct: 510 GELSASGVSFVVDDTQKYGQAI-GHLGKVVQGHLQVGASLQASIDVARRDRIRLSHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL ++LG+HV+Q GS +    LRFD +H + +   +++ +E+ VN  I +NLP+ T
Sbjct: 569 LMHAALRSVLGTHVAQKGSLVNDGYLRFDFSHPEAMKPQQIRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IV
Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GEFSTELCGGTHAERTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEQALQAMHQESDMLREAASLVKGDTQSVAEKIRGLMEKSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   +  V+ K L++++D L+ ++ S I++
Sbjct: 744 KALQQLKDQQAAQESASLSAQAVEVNGVKLLVSQLHGVEPKMLRTMVDDLKNQMGSCIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   ++E K S++  V++DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LA-TAEEGKVSLIAGVSKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGSDVAALP 861

Query: 887 QAIAGVASFL 896
           QA+A V+ ++
Sbjct: 862 QALASVSDWV 871


>gi|13470354|ref|NP_101920.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|20532259|sp|Q98NQ5|SYA_RHILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14021093|dbj|BAB47706.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 888

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/902 (51%), Positives = 633/902 (70%), Gaps = 37/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRKEGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHVWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G   +   + ++RVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 VESVFETDLFRHLIDAASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + L+ ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLVTETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      L   ++L+G+ AFKLYDT+G PLD+ QD L  R ++ +D+  F 
Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRNIS-VDLAGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ AR H  G G   TE +WFS++E+ GAT+F+GY+                  
Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREQTGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +++A+V+ G+ V+ A  G  V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 463 ------EQAEGLIQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I+D QKKA+G+FVH   V  G ++T  ++ L +D+  R +L  NHSATHL+H AL  
Sbjct: 517 SIEISDTQKKADGLFVHLGKVASGTVKTGAAVELKVDHARRTRLRANHSATHLIHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD++H+KPI++ EL+ +E   N+I+ QN PV TR+M+ +DA
Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISAEELEEVERMANEIVVQNSPVTTRLMSVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV +TG+I L+ +VS+S
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR HL  QD +LK+ A+ LK+S  +V  RVE + EE +KL+   
Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKAAAATLKISPADVPARVEALLEERKKLEKDL 756

Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + + +L +   +          +A V F+   +S V  K+LK + DA +  + SG+++ 
Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKAVSGVSPKDLKPLADAGKSSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG  ++ KASV++ VT+DL+ RF+AVDL R+++  LGG GGGGRP MAQ+GGP+ +KA+ 
Sbjct: 817 VGADEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAND 876

Query: 888 AI 889
           AI
Sbjct: 877 AI 878


>gi|256822655|ref|YP_003146618.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796194|gb|ACV26850.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 875

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/912 (43%), Positives = 551/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SS LIP NDPTL+FTN+GMV FK+ F G +K  Y   
Sbjct: 1   MTTNQIRNAFLTFFENKGHHIVDSSPLIPANDPTLLFTNAGMVQFKDCFLGIDKRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+LLT+EF L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYCWELLTEEFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY+ED+EAF +W    G  AD+I RI  N       DNFW+M +TGPCGPCSE
Sbjct: 121 KEKLWVTVYEEDDEAFDIWVNDIGFPADRISRIGDNKGERYASDNFWAMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D GE I GG PG   E+G+R+IEIWNLVFMQF +Q       LPK S+DTGMGLER+
Sbjct: 181 VFYDHGEEIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQKDGTMERLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF+HLI+++  +  +K   N   + RVI DH+RS +FLI DGI+P+
Sbjct: 241 AAILQGVHSNYEIDLFQHLIKSTADLLKVKDLDNK--SLRVIADHIRSCAFLILDGIVPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG AYP L++ K LIE+ L  
Sbjct: 299 NEGRGYVLRRIVRRAVRHGHQLGAKGIFFAKLVQPLIEVMGEAYPALVEQKELIEKVLAK 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F +TLD+G+++LD  ++ L     + ++GD  FKLYDT+G P D+  DI   +GL 
Sbjct: 359 EEEAFARTLDKGMLILDQDIADLVETNGKTISGDTVFKLYDTYGFPQDLTADIAREKGLE 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+ +QR RARA S     GT     FS+ E+   ++F GY   + +     
Sbjct: 419 -VDWDGFEKAMNQQRERARAAS---NFGTDYNDNFSIDER---SEFTGYHYTQQNV---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                              +V  +++  + V+E   G+K  V+  +TPFYAEAGGQ+GDT
Sbjct: 468 -------------------VVTRLLKGEDEVKELDQGEKGVVILAKTPFYAEAGGQVGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   V+RG    +  L   +D + R+    NHSATH
Sbjct: 509 GRLFGCGATFIVEDTQKLGDAI-AHIGYVQRGSFSNDAELTAEVDAERRQHTMRNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+HV+Q GS + P+ LRFD ++ +P+T  +L+ IE  VN  I +N  V  
Sbjct: 568 LLHAALRDILGTHVTQKGSLVGPERLRFDFSNPEPVTQEQLRQIEALVNQKIYENHAVEA 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ ++A   GA AL G KY D VRV+++        S  LCGGTHV  TG+I    I+
Sbjct: 628 ATMSMDEAKEHGAMALFGEKYGDEVRVLTM-----SPFSVELCGGTHVQRTGDIGAFKIL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AGIRRIEA TG  A + +   +  L+S+   LK     V  +V ++ ++ R+L+
Sbjct: 683 SESGIAAGIRRIEATTGAGAVNWMQSTEASLQSIGKLLKSEPSQVAEKVNQLMDKSRQLE 742

Query: 772 L--IHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIM 826
                 + KL  +       +  D+N +  ++     V++K L+ + D L+ K+ S I++
Sbjct: 743 KTIEALQSKLASSQGSDLASQAEDLNGIKLLVAKLEGVEAKALRDIQDQLKNKLGSSIVV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L GI++E K S+++ V++DL  +  A +L  + A  + GG GGGRP MAQ+GG +     
Sbjct: 803 L-GIAEEDKVSIIVGVSKDLTGKVKAGELVNMVASQV-GGKGGGRPDMAQAGGKDPAALP 860

Query: 887 QAIAGVASFLKK 898
            A+  V  ++ +
Sbjct: 861 AALDSVKPWVAE 872


>gi|197284276|ref|YP_002150148.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227357820|ref|ZP_03842168.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|194681763|emb|CAR40964.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227161930|gb|EEI46948.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 875

 Score = 1000 bits (2585), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/911 (43%), Positives = 549/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +   Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEVGVPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PG   E+G+RYIEIWN+VFMQF +++      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGTPEEDGDRYIEIWNIVFMQFNRKSDGTMDPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NYDIDLF+ LI++  +VT      N   + RVI DH+RS SFL+ DG++
Sbjct: 243 RITAVLQHVNSNYDIDLFRALIKSVAEVTNATDLANK--SLRVIADHIRSCSFLVCDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   M  A  EL   + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIDVMAEAGKELKNQQEIVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L  D  L G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELEKLTGD-TLAGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+      +  L +    + F GYD          
Sbjct: 420 -VDEEGFELAMEEQRKRARESS-GFGTD-----YNELIKVDSRSDFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N     + AI   G+ V E  +G++  +  D+T FYAE+GGQ+GD 
Sbjct: 463 -------------HNEQQGTINAIFHNGQTVTELKAGEEGIIFLDKTAFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  IG   + ++TD QK  + I  H   V  G       +   ID   R  + +NHSATH
Sbjct: 510 GLLIGKDSQFEVTDTQKYGKAI-GHIGKVISGSFIVNHKINAVIDVARRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +    LRFD +H + +   +L+ IED VN  I  N PVVT
Sbjct: 569 LLHAALRQVLGTHVTQKGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ EDA   GA AL G KY +RVRV+++     G  S+ LCGGTH + TG+I L  I+
Sbjct: 629 ELMDLEDAKQKGAMALFGEKYEERVRVLTM-----GDFSTELCGGTHAARTGDIGLFRIM 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITG  A   +  Q + +  +A  LK    N+V +++ + E+YR L+
Sbjct: 684 SESGTAAGIRRIEAITGATAIESVHEQSDLISLVAHALKSDGSNLVEKIKTVQEKYRSLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  +  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAAQESSSLGSQAKNVKGIKLLVRELNNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  IS + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LSTIS-DGKVSLIVGVTKDLTAKIKAGELISFVAQQI-GGKGGGRPDMAQAGGTDVEALP 861

Query: 887 QAIAGVASFLK 897
            A+A V  +++
Sbjct: 862 AALASVDEWVE 872


>gi|52424403|ref|YP_087540.1| alanyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|59798509|sp|Q65VQ5|SYA_MANSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52306455|gb|AAU36955.1| AlaS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 875

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/912 (43%), Positives = 555/912 (60%), Gaps = 55/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVESSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIAYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKEVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GGLPG   E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A VLQ   +NYDID+F+ LI+   Q+TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERIAAVLQHVNSNYDIDIFQTLIKKVAQLTGEKDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A   + Q + LIE+T
Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLADVMEHAGEIVNQKRALIEKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL+LLD  LS + KD +L+GDVAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLLLLDDALSQV-KDNVLSGDVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR+RA+A S           + ++ +  G T+F GY+    S    
Sbjct: 418 T-IDEKGFEREMQAQRARAQASS------NFGVDYNNVIKVDGQTEFKGYETTSLS---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             S+ V A+   G+ VE   SG+   V+ D+TPFY E+GGQ+GD
Sbjct: 467 ------------------SAKVVALFTDGKSVERVQSGENAVVILDRTPFYGESGGQIGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    +I D QK  + +  H   +E G L    ++   +D + R  ++ NHSAT
Sbjct: 509 TGYIATDLAAFRINDTQKYGQ-VTGHIGQLESGSLSVGDTVSAQVDTERRLAVAANHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    + I+  ++  IE  VN  I +N+ V 
Sbjct: 568 HLLHAALRKVLGDHVAQKGSLVSESALRFDFIQPEAISKEQIIEIEAIVNRQIRENISVT 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 628 TEVMDIEAAKQKGAMALFGEKYGDLVRVVGMTG-----FSIELCGGTHVKRTGDIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES+I AGIRRIEA+T + A + L  Q   L   A  LK    ++V +++++ ++ +K 
Sbjct: 683 VSESAIAAGIRRIEAVTAENAINWLNNQQNILNQSADLLKSDTASLVEKIQQLQDKAKKA 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +  ++       S  KI D++ +   +  +++K L+ ++D L+ ++ SG+I
Sbjct: 743 EKELQQLKEKAAMQAGSDLAKSAVKINDISVIVQQLDGIETKSLRVMVDDLKNQLGSGVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +  E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 803 VFASVV-EDKVNLIVGVTADLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 860

Query: 886 DQAIAGVASFLK 897
             A++  + +L+
Sbjct: 861 GAALSACSDWLE 872


>gi|157148231|ref|YP_001455550.1| alanyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|205830024|sp|A8ANQ1|SYA_CITK8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157085436|gb|ABV15114.1| hypothetical protein CKO_04048 [Citrobacter koseri ATCC BAA-895]
          Length = 875

 Score =  999 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/910 (44%), Positives = 573/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAISAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFAFAVSDTQKYGQAI-GHIGTLSTGSLKVGDAVQADVDDARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  ILG+HV+Q GS +    LRFD +H++ +  +E++++ED VN  I +NLPV T
Sbjct: 569 LMHAALRQILGTHVAQKGSLVNDKVLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  + ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATLHAESDRLSDIAQLLKGDSQNLGEKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|183596274|ref|ZP_02958302.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827]
 gi|188023874|gb|EDU61914.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827]
          Length = 876

 Score =  999 bits (2583), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 563/910 (61%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W K  G+  D+IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYDIWHKEVGIPVDRIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDID+F+ LI A+ + TG     N   + RVI DH+RS +FL++DG++
Sbjct: 243 RIAAVLQHVNSNYDIDIFQELIAAAAKATGSNDLSNK--SLRVIADHIRSCAFLVSDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLINVMGAAADELARQQSTVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L K + L+G+  F+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELAAL-KGDTLDGETVFRLYDTYGFPMDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR  S G G+      + SL +    ++F GY           
Sbjct: 420 -VDEEGFERAMEDQRRRARESS-GFGTD-----YNSLIKVEKHSEFSGY----------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + + AI + G+ V+   +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 462 ------------AYNEQLATITAIYKNGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     +TD QK  + I  H   VE G L     +   ID + R  + +NHSATH
Sbjct: 510 GLLRNDSGSFIVTDTQKYGQAI-GHIGKVESGSLVINHRIDAKIDVERRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T+A+L+ +ED VN  I +N P+ T
Sbjct: 569 LLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTAAQLREVEDIVNAQIRKNTPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+    GG  S  LCGGTH S TG+I L  I+
Sbjct: 629 ELMDLESAKAKGAMALFGEKYEERVRVLSM----GGDFSIELCGGTHASRTGDIGLFRIL 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A   +  Q E+L ++A  LK    ++V +V+   E+ R+L+
Sbjct: 685 SESGTAAGVRRIEATTGESALESVHSQSEQLNAIAHLLKGDMSSLVEKVKSALEKSRQLE 744

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++  + K L++++D L+ +++S II+
Sbjct: 745 KEILQLKDQQASQESASLSSKAKDIKGVKLLVSQLNNTEPKLLRTMVDDLKNQLKSAIIV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S+++ VT DL  +  A DL    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 805 LSTTSGD-KVSIIVGVTNDLTAKIKAGDLISYVAQQV-GGKGGGRPDMAQAGGTDVSALP 862

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 863 TAMASVEDWV 872


>gi|324111325|gb|EGC05307.1| alanyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 876

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +S  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LSGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|170682603|ref|YP_001744844.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|205830086|sp|B1LQ15|SYA_ECOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170520321|gb|ACB18499.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5]
          Length = 876

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLATGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|306812426|ref|ZP_07446624.1| alanyl-tRNA synthetase [Escherichia coli NC101]
 gi|305854464|gb|EFM54902.1| alanyl-tRNA synthetase [Escherichia coli NC101]
 gi|320194836|gb|EFW69465.1| Alanyl-tRNA synthetase [Escherichia coli WV_060327]
          Length = 876

 Score =  999 bits (2582), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|253772448|ref|YP_003035279.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162628|ref|YP_003045736.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|242378254|emb|CAQ33029.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253323492|gb|ACT28094.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974529|gb|ACT40200.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253978696|gb|ACT44366.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)]
          Length = 876

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/910 (44%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|94309776|ref|YP_582986.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
 gi|93353628|gb|ABF07717.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 884

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 545/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 11  MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 71  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 130

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 131 ADKLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSE 190

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 191 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERI 250

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+ + + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 251 AAVLQHVHSNYEIDLFQALIKGAGRETHIADLNQN--SLKVIADHIRACSFLIVDGVIPG 308

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL +A+  + E L++
Sbjct: 309 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKA 368

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  ++ L     ++L+G++AFKL+DT G PLD+ QD+   + + 
Sbjct: 369 EEERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT 428

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GYD L        
Sbjct: 429 -VDEAAFDAAMTRQREQARAAGKFKMAAG-------LEYSGEKTVFHGYDALSMDGVR-- 478

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+   G  V+    GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 479 --------------------VTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQ 518

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +       + D  K    +F H   +  G L+   ++   +D   R +   NHSATH
Sbjct: 519 GTLVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATH 578

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS + PD  RFD +H+ P+T A+++ IE+ VN  I  N P V 
Sbjct: 579 LMHKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVA 638

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV
Sbjct: 639 QVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVTRTGDIGLFKIV 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E+ + AGIRR+EAITG  A  +L   D +L   A+ L+     +V R+ ++ ++ R L+
Sbjct: 693 VEAGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALE 752

Query: 772 LIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIM 826
               K   KL  +  D    +  DV  +  + +++D    K L+  MD L+ K+QS  I+
Sbjct: 753 KELEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 812

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 813 LAAVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 870

Query: 887 QAIAGVASFL 896
           +A+AGV  ++
Sbjct: 871 KALAGVTEWV 880


>gi|27380861|ref|NP_772390.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27354027|dbj|BAC51015.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 894

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/911 (50%), Positives = 617/911 (67%), Gaps = 41/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 3   MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L
Sbjct: 63  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 123 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 182

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA ++Q 
Sbjct: 183 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G       + + RVI DHLRSS+FL++DG+LP+NEGRGY
Sbjct: 243 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 303 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG+ G+D  +F 
Sbjct: 363 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGI-GVDQSAFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++AR    G G   +E IWF L+EK GAT+F+GY+                  
Sbjct: 422 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYET----------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G+      +G+   +V +QTPFYAE+GGQ+GDTG  +G+G 
Sbjct: 465 ------ESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 518

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++TD QKK   +FVH   VE G L+   +L L +D+  R  +  +HSATHL+H AL 
Sbjct: 519 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 578

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS + PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  ++
Sbjct: 579 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 638

Query: 659 AIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           A  +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ +  
Sbjct: 639 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 698

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H        K+ A+ L+ S  +V  R+  + EE +KL+ 
Sbjct: 699 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 758

Query: 773 IH--AKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               A++KL +       N       ++ DV  M+  +  ++ K+LKS+ D  +K+I SG
Sbjct: 759 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 818

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ +VG++ + KA +++ VT DL  RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G 
Sbjct: 819 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 878

Query: 884 KADQAIAGVAS 894
           KA +A+A +  
Sbjct: 879 KAPEALAAIEK 889


>gi|168787948|ref|ZP_02812955.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|261225988|ref|ZP_05940269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256754|ref|ZP_05949287.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|189372228|gb|EDU90644.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
          Length = 876

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED +N  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLMNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|323935749|gb|EGB32063.1| alanyl-tRNA synthetase [Escherichia coli E1520]
          Length = 876

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYSSDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|157162143|ref|YP_001459461.1| alanyl-tRNA synthetase [Escherichia coli HS]
 gi|218690819|ref|YP_002399031.1| alanyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227888232|ref|ZP_04006037.1| alanyl-tRNA synthetase [Escherichia coli 83972]
 gi|331658802|ref|ZP_08359744.1| alanine--tRNA ligase [Escherichia coli TA206]
 gi|205830083|sp|A8A3H4|SYA_ECOHS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157067823|gb|ABV07078.1| alanyl-tRNA synthetase [Escherichia coli HS]
 gi|218428383|emb|CAR09311.2| alanyl-tRNA synthetase [Escherichia coli ED1a]
 gi|227834501|gb|EEJ44967.1| alanyl-tRNA synthetase [Escherichia coli 83972]
 gi|307554671|gb|ADN47446.1| alanyl-tRNA synthetase [Escherichia coli ABU 83972]
 gi|331053384|gb|EGI25413.1| alanine--tRNA ligase [Escherichia coli TA206]
          Length = 876

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|110642817|ref|YP_670547.1| alanyl-tRNA synthetase [Escherichia coli 536]
 gi|123147797|sp|Q0TEI3|SYA_ECOL5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110344409|gb|ABG70646.1| alanyl-tRNA synthetase [Escherichia coli 536]
          Length = 876

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    E+L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|331648414|ref|ZP_08349502.1| alanine--tRNA ligase [Escherichia coli M605]
 gi|281179700|dbj|BAI56030.1| alanyl-tRNA synthetase [Escherichia coli SE15]
 gi|331042161|gb|EGI14303.1| alanine--tRNA ligase [Escherichia coli M605]
          Length = 876

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 570/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|215488016|ref|YP_002330447.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|215266088|emb|CAS10508.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
          Length = 876

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|205371825|sp|Q89I89|SYA_BRAJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/911 (50%), Positives = 617/911 (67%), Gaps = 41/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++E WNLVFMQ+EQ  K+ER  LP+ SIDTGMGLERMA ++Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+HLI A+    G       + + RVI DHLRSS+FL++DG+LP+NEGRGY
Sbjct: 241 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG+ G+D  +F 
Sbjct: 361 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGI-GVDQSAFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++AR    G G   +E IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G+      +G+   +V +QTPFYAE+GGQ+GDTG  +G+G 
Sbjct: 463 ------ESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++TD QKK   +FVH   VE G L+   +L L +D+  R  +  +HSATHL+H AL 
Sbjct: 517 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS + PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  ++
Sbjct: 577 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           A  +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ +  
Sbjct: 637 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H        K+ A+ L+ S  +V  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 756

Query: 773 IH--AKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               A++KL +       N       ++ DV  M+  +  ++ K+LKS+ D  +K+I SG
Sbjct: 757 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ +VG++ + KA +++ VT DL  RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G 
Sbjct: 817 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 876

Query: 884 KADQAIAGVAS 894
           KA +A+A +  
Sbjct: 877 KAPEALAAIEK 887


>gi|331654174|ref|ZP_08355174.1| alanine--tRNA ligase [Escherichia coli M718]
 gi|331047556|gb|EGI19633.1| alanine--tRNA ligase [Escherichia coli M718]
          Length = 876

 Score =  998 bits (2580), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVTQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|30064057|ref|NP_838228.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56480163|ref|NP_708505.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|110806677|ref|YP_690197.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|44888327|sp|Q7UBU3|SYA_SHIFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123146773|sp|Q0T1C3|SYA_SHIF8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30042313|gb|AAP18038.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|56383714|gb|AAN44212.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|110616225|gb|ABF04892.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|281602067|gb|ADA75051.1| Alanyl-tRNA synthetase [Shigella flexneri 2002017]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   ID   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADIDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMNLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|74313262|ref|YP_311681.1| alanyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|157158305|ref|YP_001464004.1| alanyl-tRNA synthetase [Escherichia coli E24377A]
 gi|191167095|ref|ZP_03028916.1| alanyl-tRNA synthetase [Escherichia coli B7A]
 gi|193065058|ref|ZP_03046133.1| alanyl-tRNA synthetase [Escherichia coli E22]
 gi|193069650|ref|ZP_03050602.1| alanyl-tRNA synthetase [Escherichia coli E110019]
 gi|194427866|ref|ZP_03060412.1| alanyl-tRNA synthetase [Escherichia coli B171]
 gi|209920136|ref|YP_002294220.1| alanyl-tRNA synthetase [Escherichia coli SE11]
 gi|218555239|ref|YP_002388152.1| alanyl-tRNA synthetase [Escherichia coli IAI1]
 gi|218696288|ref|YP_002403955.1| alanyl-tRNA synthetase [Escherichia coli 55989]
 gi|256019527|ref|ZP_05433392.1| alanyl-tRNA synthetase [Shigella sp. D9]
 gi|260845339|ref|YP_003223117.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260856802|ref|YP_003230693.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260869370|ref|YP_003235772.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|293449010|ref|ZP_06663431.1| alanyl-tRNA synthetase [Escherichia coli B088]
 gi|307314418|ref|ZP_07594023.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|331669429|ref|ZP_08370275.1| alanine--tRNA ligase [Escherichia coli TA271]
 gi|123616373|sp|Q3YYG6|SYA_SHISS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830081|sp|A7ZQC5|SYA_ECO24 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|73856739|gb|AAZ89446.1| alanyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|157080335|gb|ABV20043.1| alanyl-tRNA synthetase [Escherichia coli E24377A]
 gi|190902877|gb|EDV62605.1| alanyl-tRNA synthetase [Escherichia coli B7A]
 gi|192927355|gb|EDV81974.1| alanyl-tRNA synthetase [Escherichia coli E22]
 gi|192957013|gb|EDV87464.1| alanyl-tRNA synthetase [Escherichia coli E110019]
 gi|194414099|gb|EDX30375.1| alanyl-tRNA synthetase [Escherichia coli B171]
 gi|209913395|dbj|BAG78469.1| alanyl-tRNA synthase [Escherichia coli SE11]
 gi|218353020|emb|CAU98845.1| alanyl-tRNA synthetase [Escherichia coli 55989]
 gi|218362007|emb|CAQ99613.1| alanyl-tRNA synthetase [Escherichia coli IAI1]
 gi|257755451|dbj|BAI26953.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257760486|dbj|BAI31983.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257765726|dbj|BAI37221.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|291322100|gb|EFE61529.1| alanyl-tRNA synthetase [Escherichia coli B088]
 gi|306905986|gb|EFN36507.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|315061973|gb|ADT76300.1| alanyl-tRNA synthetase [Escherichia coli W]
 gi|323180115|gb|EFZ65667.1| alanyl-tRNA synthetase [Escherichia coli 1180]
 gi|323377445|gb|ADX49713.1| alanyl-tRNA synthetase [Escherichia coli KO11]
 gi|323946425|gb|EGB42453.1| alanyl-tRNA synthetase [Escherichia coli H120]
 gi|324119946|gb|EGC13824.1| alanyl-tRNA synthetase [Escherichia coli E1167]
 gi|331063097|gb|EGI35010.1| alanine--tRNA ligase [Escherichia coli TA271]
 gi|332103001|gb|EGJ06347.1| alanyl-tRNA synthetase [Shigella sp. D9]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|218706191|ref|YP_002413710.1| alanyl-tRNA synthetase [Escherichia coli UMN026]
 gi|293406188|ref|ZP_06650114.1| alaS [Escherichia coli FVEC1412]
 gi|298381926|ref|ZP_06991523.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|331664248|ref|ZP_08365154.1| alanine--tRNA ligase [Escherichia coli TA143]
 gi|218433288|emb|CAR14188.1| alanyl-tRNA synthetase [Escherichia coli UMN026]
 gi|284922633|emb|CBG35721.1| alanyl-tRNA synthetase [Escherichia coli 042]
 gi|291426194|gb|EFE99226.1| alaS [Escherichia coli FVEC1412]
 gi|298277066|gb|EFI18582.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|331058179|gb|EGI30160.1| alanine--tRNA ligase [Escherichia coli TA143]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGTNFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|293415946|ref|ZP_06658586.1| alanyl-tRNA synthetase [Escherichia coli B185]
 gi|331684309|ref|ZP_08384901.1| alanine--tRNA ligase [Escherichia coli H299]
 gi|291432135|gb|EFF05117.1| alanyl-tRNA synthetase [Escherichia coli B185]
 gi|331077924|gb|EGI49130.1| alanine--tRNA ligase [Escherichia coli H299]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|331674208|ref|ZP_08374968.1| alanine--tRNA ligase [Escherichia coli TA280]
 gi|222034390|emb|CAP77132.1| alanyl-tRNA synthetase [Escherichia coli LF82]
 gi|312947225|gb|ADR28052.1| alanyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|331068302|gb|EGI39697.1| alanine--tRNA ligase [Escherichia coli TA280]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|170765841|ref|ZP_02900652.1| alanyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170124987|gb|EDS93918.1| alanyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQALVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +S  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LSGKVTALFVDGKAVDVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L    ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLNVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLGEIAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|16130604|ref|NP_417177.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|89109484|ref|AP_003264.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170082274|ref|YP_001731594.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188492036|ref|ZP_02999306.1| alanyl-tRNA synthetase [Escherichia coli 53638]
 gi|194439000|ref|ZP_03071084.1| alanyl-tRNA synthetase [Escherichia coli 101-1]
 gi|238901834|ref|YP_002927630.1| alanyl-tRNA synthetase [Escherichia coli BW2952]
 gi|254037736|ref|ZP_04871794.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43]
 gi|256024797|ref|ZP_05438662.1| alanyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|307139383|ref|ZP_07498739.1| alanyl-tRNA synthetase [Escherichia coli H736]
 gi|331643380|ref|ZP_08344511.1| alanine--tRNA ligase [Escherichia coli H736]
 gi|2507425|sp|P00957|SYA_ECOLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830082|sp|B1XCM5|SYA_ECODH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1789048|gb|AAC75739.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655]
 gi|1800083|dbj|BAA16559.1| alanyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169890109|gb|ACB03816.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|188487235|gb|EDU62338.1| alanyl-tRNA synthetase [Escherichia coli 53638]
 gi|194422121|gb|EDX38124.1| alanyl-tRNA synthetase [Escherichia coli 101-1]
 gi|226839360|gb|EEH71381.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43]
 gi|238859951|gb|ACR61949.1| alanyl-tRNA synthetase [Escherichia coli BW2952]
 gi|260448253|gb|ACX38675.1| alanyl-tRNA synthetase [Escherichia coli DH1]
 gi|309703056|emb|CBJ02388.1| alanyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|315137304|dbj|BAJ44463.1| alanyl-tRNA synthetase [Escherichia coli DH1]
 gi|323941473|gb|EGB37656.1| alanyl-tRNA synthetase [Escherichia coli E482]
 gi|323960644|gb|EGB56270.1| alanyl-tRNA synthetase [Escherichia coli H489]
 gi|323971514|gb|EGB66748.1| alanyl-tRNA synthetase [Escherichia coli TA007]
 gi|331036851|gb|EGI09075.1| alanine--tRNA ligase [Escherichia coli H736]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|323978695|gb|EGB73777.1| alanyl-tRNA synthetase [Escherichia coli TW10509]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/910 (44%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGVNFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|91212055|ref|YP_542041.1| alanyl-tRNA synthetase [Escherichia coli UTI89]
 gi|117624928|ref|YP_853916.1| alanyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218559685|ref|YP_002392598.1| alanyl-tRNA synthetase [Escherichia coli S88]
 gi|237706683|ref|ZP_04537164.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|122422735|sp|Q1R804|SYA_ECOUT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830084|sp|A1AEN7|SYA_ECOK1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91073629|gb|ABE08510.1| alanyl-tRNA synthetase [Escherichia coli UTI89]
 gi|115514052|gb|ABJ02127.1| alanyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|218366454|emb|CAR04206.1| alanyl-tRNA synthetase [Escherichia coli S88]
 gi|226899723|gb|EEH85982.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|294489971|gb|ADE88727.1| penicillin-binding protein 7 [Escherichia coli IHE3034]
 gi|307625735|gb|ADN70039.1| alanyl-tRNA synthetase [Escherichia coli UM146]
 gi|323951085|gb|EGB46961.1| alanyl-tRNA synthetase [Escherichia coli H252]
 gi|323957093|gb|EGB52818.1| alanyl-tRNA synthetase [Escherichia coli H263]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 570/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNESRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|293412052|ref|ZP_06654775.1| alanyl-tRNA synthetase [Escherichia coli B354]
 gi|291468823|gb|EFF11314.1| alanyl-tRNA synthetase [Escherichia coli B354]
          Length = 876

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|15832808|ref|NP_311581.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168749982|ref|ZP_02775004.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|168755438|ref|ZP_02780445.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|168762908|ref|ZP_02787915.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168768784|ref|ZP_02793791.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|168774775|ref|ZP_02799782.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|168778675|ref|ZP_02803682.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|168800226|ref|ZP_02825233.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|194433071|ref|ZP_03065354.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|195938445|ref|ZP_03083827.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|208805868|ref|ZP_03248205.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208813761|ref|ZP_03255090.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208818286|ref|ZP_03258606.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209398791|ref|YP_002272160.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217327497|ref|ZP_03443580.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254794638|ref|YP_003079475.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|291284024|ref|YP_003500842.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|20532246|sp|Q8X3W8|SYA_ECO57 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13363025|dbj|BAB36977.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187769613|gb|EDU33457.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188015823|gb|EDU53945.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189003197|gb|EDU72183.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189357241|gb|EDU75660.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189362083|gb|EDU80502.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189366853|gb|EDU85269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189377449|gb|EDU95865.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|194418798|gb|EDX34884.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|208725669|gb|EDZ75270.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208735038|gb|EDZ83725.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208738409|gb|EDZ86091.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209160191|gb|ACI37624.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217319864|gb|EEC28289.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254594038|gb|ACT73399.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290763897|gb|ADD57858.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320640339|gb|EFX09878.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320645886|gb|EFX14867.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320651186|gb|EFX19621.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320656736|gb|EFX24624.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662279|gb|EFX29676.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667330|gb|EFX34288.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
          Length = 876

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|218547790|ref|YP_002381581.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|218355331|emb|CAQ87938.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
          Length = 876

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRKVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|319407395|emb|CBI81046.1| Alanyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 887

 Score =  997 bits (2578), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/910 (52%), Positives = 637/910 (70%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+ FL++F +NGHE+L SS LIP NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSAFLDYFHRNGHEILSSSPLIPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS +E+G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI  S+++TG++  G  + +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIHTSQEITGIEATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM  LLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMEKLLPVLVREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+     L + + L+G+VAFKLYDT+G PLD+ QD L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEASIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE IWFS+++K G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGITEFLGYEA----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A+V  GEIV+   SGQ   +V +QTPFYAE+GGQ+GD+G   G+  
Sbjct: 463 ------EKAEGVITALVCDGEIVDHISSGQDAVLVVNQTPFYAESGGQVGDSGIISGESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q+K +GIF+H   V+ G  +    + L +D + RR++  NHSATHLLH AL  
Sbjct: 517 VFEVRDTQRKGDGIFIHIGEVKSGRAKISDCVELIVDSERRRKIRANHSATHLLHEALRC 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++P  LRFD +H KPI+S ELK +ED  NDI+ QN  V+TR+M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVITRLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       E     S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPIELKKHWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           S+ +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  N+  R+  + ++ RK +   
Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756

Query: 774 -HAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + ++ + LN   L   K     I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NNTRKNVFLNGGALQGKKEEITIINGISFMGRVLRNIAVRDLKTLVDSGKKQIKSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + IS++ K S ++ VT+DL++  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISISEDGKGSAVVGVTDDLINILNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|15803211|ref|NP_289243.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|12517136|gb|AAG57801.1|AE005498_2 alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
          Length = 878

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG 
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGT 855


>gi|331678669|ref|ZP_08379343.1| alanine--tRNA ligase [Escherichia coli H591]
 gi|331073499|gb|EGI44820.1| alanine--tRNA ligase [Escherichia coli H591]
          Length = 876

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/910 (44%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +S V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQERANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|323966841|gb|EGB62270.1| alanyl-tRNA synthetase [Escherichia coli M863]
          Length = 876

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGVNFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|82778066|ref|YP_404415.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|123561812|sp|Q32CN1|SYA_SHIDS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81242214|gb|ABB62924.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 876

 Score =  997 bits (2577), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|312795632|ref|YP_004028554.1| Alanyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167407|emb|CBW74410.1| Alanyl-tRNA synthetase (EC 6.1.1.7) [Burkholderia rhizoxinica HKI
           454]
          Length = 893

 Score =  996 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/911 (42%), Positives = 543/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +   Y   
Sbjct: 20  MKAAEIREKFLRFFESKGHTIVRSSSLVPANDPTLLFTNSGMVQFKDVFLGADTRPYSRA 79

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L 
Sbjct: 80  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTRVYQLP 139

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L +TVY ED+EA+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 140 PEKLTVTVYHEDDEAYDIWANEIGVPLERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 199

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  EEG+R+IEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 200 IFYDHGPQVWGGPPGSADEEGDRFIEIWNLVFMQFNRDAQGNLTPLPKQCVDTGMGLERL 259

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+    +N  + +VI DH+R+  FLI DG++P 
Sbjct: 260 AAVLQHVHSNYEIDLFQRLIAAAARETGVLDLAHN--SLKVIADHIRACGFLIVDGVIPG 317

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL  A+  + + LR 
Sbjct: 318 NEGRGYVLRRIVRRAIRHGYKLGRKSPFFHRLVEDLVGEMGAAYPELKVAQQRVTDVLRQ 377

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  LS L     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 378 EEERFFETIEHGMSILDAALSELTARGAKVLDGELAFKLHDTYGFPLDLTADVCRERGI- 436

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D ++F++A+  QR +ARA           ++  +L      T F GYD     K + +
Sbjct: 437 GVDEVAFDEAMARQREQARAAGK-------FRMVQTLDYTGSKTTFHGYD-----KHVFD 484

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           D K                 V A+   G  V    +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 485 DAK-----------------VVAVYVDGTAVPSLRAGQQGVVVLDQTPFYAESGGQVGDQ 527

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K    +  HH  +E+G L+    +   +D + R + + NHSATH
Sbjct: 528 GTIGNATVRFAVFDTLKVQADVVGHHGTLEQGELKVGDVVSARVDAERRARTARNHSATH 587

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS + PD  RFD +H  P++  E++ +E  VN  +  N P + 
Sbjct: 588 LMHKALREVLGPHVQQKGSLVDPDKTRFDFSHHAPLSDDEIRRVEAIVNAEVLANTPGLA 647

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+ SGA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 648 RVMPFDDAVKSGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVQRTGDIGLFKIV 701

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   +  L   A+ LKV    +  R+ ++ +++R L+
Sbjct: 702 FEGGVAAGIRRVEAITGDNAVRYVQDLESTLAGAAAALKVQPAELAPRIAQVQDQFRALE 761

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A+ K ++              +A V+ ++  +   D K L+  +D L+ K++   I+
Sbjct: 762 KELAQLKSKIASSQGDELVSQAVDVAGVHVLAAQLEGADVKTLRETVDKLKDKLKHAAIV 821

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG + +K  
Sbjct: 822 LASV-DGGKVSLIAGVTTDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPSKLP 879

Query: 887 QAIAGVASFLK 897
            A++GV  +++
Sbjct: 880 AALSGVKEWIQ 890


>gi|205830252|sp|Q1LQ59|SYA_RALME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  996 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 541/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 ADKLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+ + + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKGAGRETHIADLNQN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL +A+  + E L++
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  ++ L     ++L+G++AFKL+DT G PLD+ QD+   + + 
Sbjct: 359 EEERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GYD L        
Sbjct: 419 -VDEAAFDAAMTRQREQARAAGKFKMAAG-------LEYSGEKTVFHGYDALSMDGVR-- 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+   G  V+    GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 469 --------------------VTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +       + D  K    +F H   +  G L+   ++   +D   R +   NHSATH
Sbjct: 509 GTLVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS + PD  RFD +H+ P+T A+++ IE+ VN  I  N P V 
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L  IV
Sbjct: 629 QVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVTRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E+ + AGIRR+EAITG  A  +L   D +L   A+ L+     +V R+ ++ ++ R L+
Sbjct: 683 VEAGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               K K +L              +  +  ++  +   D K L+  MD L+ K+QS  I+
Sbjct: 743 KELEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 803 LAAVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860

Query: 887 QAIAGVASFL 896
           +A+AGV  ++
Sbjct: 861 KALAGVTEWV 870


>gi|295688603|ref|YP_003592296.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295430506|gb|ADG09678.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 880

 Score =  996 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/904 (49%), Positives = 591/904 (65%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F K  H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLDYFGKADHAVVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT EF L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLLTGEFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PKEKLLVTVYHTDDEAADLWKKIAGLSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQFEQ    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGDRVSLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI AS ++TG+K EG+   +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKALIAASVELTGVKAEGDQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  EMG AYPEL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGAQEPLMHRLAPTLVAEMGQAYPELRRAEASIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   ++L    +L+G+ AFKLYDT+G PLD+ QD + A+GL  +D   F+
Sbjct: 361 TTLGRGMGLLDEATANLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR  ARA+  G G       WF++KEK GAT F+GY+                  
Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFAIKEKNGATDFVGYETTET-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    + +V+AIV  G  V+ A  G  VEV+ D+T FYAE+GGQ GD G    +G 
Sbjct: 466 ---------TGVVQAIVVDGAEVQSATGGTTVEVLLDRTSFYAESGGQAGDQGALEANGR 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +  G L+    +V+++D   R+    NHSA HL+H AL  
Sbjct: 517 ENRVIDTQKQAGELHVHRVEL-SGELKVGDKVVVSVDADRRQTTRSNHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T  EL  IE  VN +I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTPEELDKIEAEVNAVIRQNVPAETKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     ++   +S  LCGGTHVS TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLTDESKAYSVELCGGTHVSRTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR  L+ Q    KSLA   K     V  RV+ +  + ++L+   A+
Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKSLADQFKTPVAEVAQRVDALIADRKRLEKELAE 755

Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K QL +           +  V  ++ ++  V  KEL+ V +  +K++ SG++ LVG S 
Sbjct: 756 AKKQLALGGGGAASGPEDVNGVALIARVLDGVGGKELRGVAEEFKKQLTSGVVALVGTS- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+ +KAD+ +A V
Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKADEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KAAL 878


>gi|170019057|ref|YP_001724011.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|205830085|sp|B1IUY2|SYA_ECOLC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169753985|gb|ACA76684.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739]
          Length = 876

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PANENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|283786756|ref|YP_003366621.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282950210|emb|CBG89846.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 875

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/910 (44%), Positives = 573/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+   +IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRARIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ + GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHVWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI A  +VTG     N   + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIDAVAKVTGATDLSNK--SLRVIADHIRSCAFLVADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVGPLIEVMGSAGEELKRQQALVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYEHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQQAVVVLDQTPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVSDTQKYGQAI-GHIGTLSAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +  +E++++ED VN  I +NLPV T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKLLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NVMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMATVHAQSDRLNEIAHLLKGDSQNLGDKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|261867354|ref|YP_003255276.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412686|gb|ACX82057.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 874

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 557/912 (61%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ DEEA+K+W    G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIVAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+F+ LI  + ++TG K   N   + RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKDLTNK--SLRVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGAAEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + K ++L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEV-KGKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQ------FGMDYNNVIRVDGITRFEGY---------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +   + V A+   G+ V+   SGQ   V+ D TPFYAE+GGQ+GD
Sbjct: 461 -------------TESETLAKVTALFHDGKPVDTISSGQSAVVILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK  + +F H   + +G L    S+   +D   R+++S+NHSAT
Sbjct: 508 IGRLEGNGFNFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDEVRRQRISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    +PI+ A+L  +E  VN  +  N P+ 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPIK 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  E A A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKKV 741

Query: 771 QLIHA--KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K K  L   +       KI  V+ ++  +  +++K L+S++D+L+ ++ S +I
Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +  ++K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASVV-DEKVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPENV 859

Query: 886 DQAIAGVASFLK 897
           ++A++  + +LK
Sbjct: 860 NKALSVCSDWLK 871


>gi|118588631|ref|ZP_01546039.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata
           IAM 12614]
 gi|118438617|gb|EAV45250.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata
           IAM 12614]
          Length = 885

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/907 (51%), Positives = 631/907 (69%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ FL++F+ NGHE++ S  L+P NDPTLMF N+GM  FKN+FTG EK  Y  
Sbjct: 1   MTGVNEIRSAFLDYFKTNGHEVVESGPLVPRNDPTLMFANAGMNQFKNVFTGLEKRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TV+ ED++AF LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PKEKLLVTVFAEDDQAFDLWKKIAGLSEDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ  ++    LP+ SIDTGMG+ER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQTPEKRL-DLPRPSIDTGMGIERIAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK LI AS   TG++ EG+   +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFKALIAASVNATGVEAEGDATGSHRVIADHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG +EPLM  L+PAL  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGASEPLMHKLVPALVREMGRAYPELSRAEDLITETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L     L+G+ AFKLYDT+G PLD+ QD L  R ++ +D   FN
Sbjct: 360 KTLERGLGLLDTATEGLEAGGRLDGETAFKLYDTYGFPLDLTQDALRTRDIS-VDTDGFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G GS  TE +WF+LKEK+GAT F+GY+                  
Sbjct: 419 AAMERQKAEARAAWSGSGSAATEAVWFALKEKHGATDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V  +    + V++  +G+   VV +QTPFY E+GGQ+GDTG  +  G+
Sbjct: 462 ------ETAEGVVAGLAADDKEVDKLSAGESGFVVLNQTPFYGESGGQVGDTGWMLASGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  +T+ QKKA+G+FVH   VE G L   ++L L +D+  R+ +  NHSATHL+H AL  
Sbjct: 516 KAAVTNTQKKADGLFVHSVTVEEGELVPGLALELKVDHSRRKAIRSNHSATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS +TP+ LRFD +H KP++  EL ++E   N+I+ QN PV TR+M  +DA
Sbjct: 576 VLGNHVAQKGSLVTPERLRFDFSHPKPVSDEELATVESFANEIVLQNAPVDTRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY + VRVVS+       + G  +S  LCGGTHV  TG+I L+ +VSE 
Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGPKQGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ AG+RRIEA+TG  AR +L  QD++++ LAS LK+S  +V  RV ++ E+ +KL  +L
Sbjct: 696 AVAAGVRRIEALTGSEAREYLDAQDKRMRELASLLKISADDVPARVAQLVEDRKKLEREL 755

Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             AK+KL +           +      M+ ++  ++ K+LK + D  + ++ SG+++L+ 
Sbjct: 756 ADAKKKLAMGGGADGGTPVKEAGSFKLMARVVEGINPKDLKGMADEAKTQLGSGVVVLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++++ KA+++  VT+DL D+ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G KA QA+
Sbjct: 816 VAEDDKAAIVTAVTQDLTDKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGAKAAQAV 875

Query: 890 AGVASFL 896
           A + + L
Sbjct: 876 AVIEAHL 882


>gi|330908728|gb|EGH37242.1| alanyl-tRNA synthetase [Escherichia coli AA86]
          Length = 876

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|148828002|ref|YP_001292755.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|205830061|sp|A5UHW6|SYA_HAEIG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148719244|gb|ABR00372.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 874

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  +KK ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|319899070|ref|YP_004159163.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319403034|emb|CBI76589.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 887

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/910 (52%), Positives = 635/910 (69%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++F  NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y+ 
Sbjct: 1   MNSVNSIRSTFLDYFHHNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKYPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D  A +LW+KISGL  +KIIRI TNDNFWSM + GPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHTDNVAAELWRKISGLPDEKIIRIATNDNFWSMGDIGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E G+R+IEIWNLVFMQ+EQ NK+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIFGGPPGSAYENGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI+AS+++TG++  G  I +HRVI DHLRSS+FLI+DG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFCKLIRASQEITGVEATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  E LM HLLP L  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMGHLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + +  +G+VAFKLYDT+G P+D+ QD+L  RG++ +DI +F 
Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPIDLTQDVLRRRGIS-VDIDAFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++  RA+  G G+  TE +WFS++++ G T+F+GY+                  
Sbjct: 420 KAMELQKAENRANWSGSGASMTETVWFSIRDQVGTTEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A+V  G+IV+   SGQ   +V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 463 ------EKAEGVITALVCDGKIVDHVFSGQDAMLVVNQTPFYAESGGQIGDSGVICSESF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q++ EG+F+H   V+ G  +    + L ID   RR++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQRRGEGVFIHIGKVKSGQAKISDCVELIIDSGRRRKIRANHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS ++PD LRFD +H K I+S ELK +ED  NDI+ +N  V T +M  +DA
Sbjct: 577 ILGPHVAQKGSLVSPDRLRFDFSHPKSISSEELKRVEDLANDIVLRNSKVTTHLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I  GA AL G KY D VRVVS+       E     S  LCGGTHV  TG+I L++IV+ES
Sbjct: 637 IFEGAMALFGEKYGDEVRVVSMGERCEPTELKKRWSIELCGGTHVQRTGDIGLIHIVAES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI +G+RRIEA+TG  AR +L  QD+++  +ASFLK S  NV  RV  ++++ RKL+   
Sbjct: 697 SIASGVRRIEALTGTTARLYLSKQDKRIYEIASFLKASPANVEERVRNLFDDRRKLEKEL 756

Query: 775 --AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++ + LN   L   K     I  ++FM  ++  +  ++LK+++D+ +K+I+SG++  
Sbjct: 757 NDTRKSVVLNGRALQGRKENITIINGISFMGGVLRNIAVRDLKTLVDSGKKQIESGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL +  NAVDL R+ + VLGG GGGGRP MAQ+GG  G+KAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLTNMLNAVDLVRVISVVLGGQGGGGRPDMAQAGGSKGDKADE 876

Query: 888 AIAGVASFLK 897
           AI  + +FLK
Sbjct: 877 AITALKAFLK 886


>gi|187734262|ref|YP_001881554.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|205830210|sp|B2U049|SYA_SHIB3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187431254|gb|ACD10528.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 876

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|82545227|ref|YP_409174.1| alanyl-tRNA synthetase [Shigella boydii Sb227]
 gi|123558824|sp|Q31X62|SYA_SHIBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81246638|gb|ABB67346.1| alanyl-tRNA synthetase [Shigella boydii Sb227]
 gi|320186483|gb|EFW61211.1| Alanyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332091817|gb|EGI96895.1| alanyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 876

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKDANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|167587422|ref|ZP_02379810.1| alanyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 874

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTESRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLNNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANASTRFAVGDTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D   L   ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELALQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|229844682|ref|ZP_04464821.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|229812396|gb|EEP48086.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 874

 Score =  995 bits (2573), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 552/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI+ + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIEKTAEIVGATDLSNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|148826541|ref|YP_001291294.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229845865|ref|ZP_04465977.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|205830060|sp|A5UDR0|SYA_HAEIE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148716701|gb|ABQ98911.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|229810869|gb|EEP46586.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 874

 Score =  995 bits (2573), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/913 (42%), Positives = 551/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKSAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSIIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLTQIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEAITGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAITGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVITQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|145632173|ref|ZP_01787908.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|144987080|gb|EDJ93610.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655]
          Length = 874

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 551/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLSNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKILANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|327394965|dbj|BAK12387.1| alanyl-tRNA synthetase AlaS [Pantoea ananatis AJ13355]
          Length = 875

 Score =  995 bits (2572), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 554/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   
Sbjct: 3   KSTAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI+A  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFQTLIEAVAKVTGATDLNNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+E+F KTL+RGL LLD  L+ L + + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEEQFAKTLERGLALLDEELAKL-QSDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S G G+  +  I         A+ F GY+ L        
Sbjct: 420 -IDEAGFEKAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYEQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VKA+   GE V+   +GQ   +V D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LTATVKALFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GELKGNNALFSVQDTQKYGQAI-GHIGKLSSGQLRVGDRLEAVVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ E A A GA AL G KY+ +VRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 RVMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ +A  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++          +  V  +   +S  D K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESAQLGNHAVDVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV-GGKGGGRPDMAQAGGSDATALK 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 GALAGVEGWV 871


>gi|293390902|ref|ZP_06635236.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290951436|gb|EFE01555.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 874

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 558/912 (61%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ DEEA+K+W    G++A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIAAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+F+ LI  + ++TG K   N   + RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKDLTNK--SLRVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + K ++L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEV-KGKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQ------FGMDYNNVIHVDGITRFEGY---------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +   + V A+   G+ V+   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 461 -------------TESETLAKVTALFHDGKPVDTISAGQSAVVILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK  + +F H   + +G L    S+   +D   R+ +S+NHSAT
Sbjct: 508 IGRLEGNGFNFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDEVRRQHISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    +PI+ A+L  +E  VN  +  N P+ 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPIK 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  E A A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKKV 741

Query: 771 QLIHA--KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K K  L   +       KI  V+ ++  +  +++K L+S++D+L+ ++ S +I
Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   +  ++K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 IFASVI-DEKVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPENV 859

Query: 886 DQAIAGVASFLK 897
           ++A++  + +LK
Sbjct: 860 NKALSVCSDWLK 871


>gi|92117171|ref|YP_576900.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|91800065|gb|ABE62440.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14]
          Length = 897

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/901 (51%), Positives = 610/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 7   MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 67  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 126

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 127 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 186

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 187 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 246

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG    G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 247 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 307 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 366

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+DI SF 
Sbjct: 367 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDIASFT 425

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G   TE IWF L+EK GAT+F+GY+                  
Sbjct: 426 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYET----------------- 468

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G+  +   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 469 ------EIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD QKKA  +FVH   VE+G L   M+L L +D   R  +  NHSATHLLH AL  
Sbjct: 523 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 582

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 583 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 642

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+          +    S  LCGGTHV  TG+I L+ +  
Sbjct: 643 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 702

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H     +  K+ A  L+ +  ++  R+  + EE +KL+ 
Sbjct: 703 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 762

Query: 773 I--HAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               A++KL +       +        +  +  M+  +  ++ K+LK++ D  +K++ SG
Sbjct: 763 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 822

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 823 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 882

Query: 884 K 884
           K
Sbjct: 883 K 883


>gi|315635122|ref|ZP_07890400.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315476084|gb|EFU66838.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 874

 Score =  994 bits (2571), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/912 (42%), Positives = 561/912 (61%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RL++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKERLWVTVYETDDEAYNIWHKEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLANK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIDVMAEAGEEVKKQQATVEKF 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++ K+ +L+G+VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANV-KENVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A ID + F + +E QR RA++ S           + S+    G T+F GY          
Sbjct: 418 A-IDEVGFEREMELQRVRAQSASQ------FGMDYNSVIRVDGTTRFEGY---------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +   + V A+  +G  VE   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 461 -------------TESETLAKVTALFHEGNPVESISAGQSAVVILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK  + +F H   + +G L    S+   +D   R+++S+NHSAT
Sbjct: 508 IGRLEGNGFCFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDDVRRQRISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD    + I+ A+L  +E  VN  +  N P+ 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDTLLRFDFAQHEAISKAQLAEVERIVNQQVRANNPIQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM  E A A GA AL G KY+++VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMELEAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    +V  ++  + ++Y+K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSAELLKSDVNSVTDKISLLQDKYKKV 741

Query: 771 QLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGII 825
           +      K K  L   +       ++N +S I+ ++D   +K L++++D+L+ ++ S ++
Sbjct: 742 EKELQTLKEKAALQAGNDLAKSAVEINGVSVIVQQLDGIEAKSLRAMVDSLKNQLGSAVV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + ++K ++++ VT+DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFAS-ALDEKVNLIVGVTQDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTEPQNI 859

Query: 886 DQAIAGVASFLK 897
           ++A++  + +LK
Sbjct: 860 NKALSVCSDWLK 871


>gi|254245667|ref|ZP_04938988.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184]
 gi|124870443|gb|EAY62159.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184]
          Length = 897

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|145634774|ref|ZP_01790482.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145267940|gb|EDK07936.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 874

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSGQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKHTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K 
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 770 -LQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +L   K K  +           KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 DKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|298292138|ref|YP_003694077.1| alanyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928649|gb|ADH89458.1| alanyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 883

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/905 (51%), Positives = 622/905 (68%), Gaps = 33/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR TFL++F KNGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRATFLDYFAKNGHQVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+EF+L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIEFAWNLITREFEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY ED+EAF LWK+I+GL   KI+RI T+DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PVEKLMVTVYHEDDEAFSLWKRIAGLPDSKIVRIATSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS + +G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER++ VLQ 
Sbjct: 181 DHIPGGPPGSPDADGDRFIEIWNLVFMQFEQLPGGERLNLPRPSIDTGMGLERISAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDL + L  A E++T +  +G    +HRVI DHLR+S+FL+ADG+LP+NEGRGY
Sbjct: 241 THDNYEIDLMRALTGAVEEMTDVPADGPQKASHRVIADHLRASTFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+P L  EMG A+PE+++A+ L+ ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMHRLVPILVREMGRAFPEIVRAEPLVTETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +L+     LG     +G+ AFKLYDT+G PLD+ +D L ARG+  +D+ SFN
Sbjct: 361 KTLERGLSILETESEGLGAGAKFSGETAFKLYDTYGFPLDLTEDALRARGV-NVDVDSFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   T+ +WF+++E+ G T+F+GY                   
Sbjct: 420 AAMERQRAEARASWAGSGEAATDTVWFAVREEVGPTEFLGYGT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V +G+ VE   +G +  VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 463 ------ETAEGTVTALVTEGKRVETLPAGARGLVVLNQTPFYGESGGQVGDTGTMSGEGG 516

Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +L++T  QKK   IF H   VE G L     L L +D + R+ +  NHSATHLLH AL 
Sbjct: 517 LKLRVTGTQKKLGDIFAHEVEVEEGTLTIGAPLALFVDGERRQAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H KP+ +AELK++ED  N I+ +N PVVTR+M  +D
Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPVEAAELKAVEDIANRIVLRNEPVVTRLMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI SGA AL G KY D VRVVS+  +  +G  +S  LCGGTHV+ TG+I L+ ++ ES++
Sbjct: 637 AIESGARALFGEKYGDEVRVVSMGTDPGNGAPYSVELCGGTHVARTGDIGLVSVLGESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH-- 774
            AG+RRIEA+TG  AR HL  Q   L+  A  L+   G V  R+ ++ EE RKL+     
Sbjct: 697 GAGVRRIEAMTGDAARHHLNAQSRALQGAADVLRAPVGEVEARIAQLVEERRKLERELGD 756

Query: 775 AKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           AKRKL +      +     +  V  ++  +S +D K+LKS+ D  +K+I SGI+ +VG++
Sbjct: 757 AKRKLAMGGGAASEEPARTVGAVKLLARQVSGIDLKDLKSLADEGKKRIGSGIVAIVGVT 816

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           +E +A +++ VT+DL  +++AV L R  A+ LGG GGGGRP MAQ+GGP+G +A +A+A 
Sbjct: 817 EEGRAGLVVGVTDDLTGKYDAVALVRRGAEALGGKGGGGRPDMAQAGGPDGGRAAEALAA 876

Query: 892 VASFL 896
           + + L
Sbjct: 877 IENAL 881


>gi|317049269|ref|YP_004116917.1| alanyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316950886|gb|ADU70361.1| alanyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 875

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/910 (44%), Positives = 556/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYDIWANDIGIPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI++   VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFAKLIKSVADVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  +L + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIEVMGSAGEDLQRQQAQVENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L+ L + + L+G+  F+LYDT G P+D+  D+   R L 
Sbjct: 361 KAEEEQFAKTLERGLALLDEELAKL-QGDTLDGETVFRLYDTFGFPVDLTADVCRERDLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F  A+E+QR RAR  S G G+     I         A+ F GYD L        
Sbjct: 420 -IDEAGFEVAMEQQRQRAREAS-GFGADYNNVIRID-----SASAFKGYDQLA------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V+A+   G+ V+   +GQ   VV D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LASTVQALFVDGQQVDHVSAGQDAVVVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + D QK  + I  H   + +G LR    L   +D + R ++ +NHSATH
Sbjct: 510 GVLAGNNAEFSVQDTQKYGQAI-GHIGKLTQGQLRVGDRLNAQVDEERRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLAVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+ RVRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDQRVRVLSM-----GDFSTELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +  Q  +L  +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQVNAQSHQLHDIAQLVKANSSNLNEKVRGLVDHVRALE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++ +    K  DV     ++SE   V+ K L+++MD L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESASLSSKAIDVKGTKLLVSELSNVEPKMLRTMMDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG N     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELVGELAAQV-GGKGGGRPDMAQAGGTNPQALA 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 GALAGVQDWV 871


>gi|320173452|gb|EFW48651.1| Alanyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 876

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/910 (44%), Positives = 569/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K   +  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVEIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|145636626|ref|ZP_01792293.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|145270152|gb|EDK10088.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH]
          Length = 874

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/913 (42%), Positives = 552/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQTGSDFVKSAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|219870706|ref|YP_002475081.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|219690910|gb|ACL32133.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 875

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/912 (41%), Positives = 555/912 (60%), Gaps = 55/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTSEIRQAFLEFFQSKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W +  G+ A+ I+RI  N       DNFW M +TGPCGP
Sbjct: 121 ALPKEKLWVTVYETDDEAYDIWNREIGVPAEHIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS+ E+G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI+    +  +    N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQALIKEIASLLNVTDLDNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  +LG        L+P L   MG A   L Q +  I++ 
Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGNILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+++F +TL+RGL LL+  L+ + ++++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEDQFARTLERGLALLEDALTKV-ENKVLSGEVAFKLYDTYGFPLDLTADVCRERSI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR+RA+A S           +  + +  G+T+F GY++        
Sbjct: 418 T-IDEAGFEREMQAQRARAQASS------NFGTDYNYVIKVDGSTEFKGYEVTE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   SG+   VV D+T FY E+GGQ+GD
Sbjct: 465 -----------------CEATVVALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK  + +F H   +  G L     +   ++   R  +++NHSAT
Sbjct: 508 SGVIASEICNFEVNDTQKYGQ-VFGHIGQLASGTLSVGDKVKAEVNATRRHAITLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ A+L+ IE  +N  I +N+ V 
Sbjct: 567 HLLHSALRQVLGDHVAQKGSLVSENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A   GA AL G KY DRVRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 TEVMDLESAKQKGAMALFGEKYGDRVRVVDMT----AAFSVELCGGTHVKQTGEIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AG+RRIEA+TG+ A   L  Q + L   A  LK    ++V +++++ E+ +K+
Sbjct: 683 VSEGAVAAGVRRIEAVTGENAIGLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKV 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +          +I  VN +   +  VD+K L++++D L+ ++ S +I
Sbjct: 743 EKELQQLKDKLAAQAGGELAKQAQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +      ++K ++++ VT+DL D+ NA +L  L A+ + GG GGGR  MA +GG      
Sbjct: 803 VFA-TQTDEKVNLIVGVTKDLTDKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENI 860

Query: 886 DQAIAGVASFLK 897
            QA+    ++++
Sbjct: 861 TQALNVATNWIQ 872


>gi|301169533|emb|CBW29134.1| alanyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 874

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 551/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 TQAIKVAQDWLNK 872


>gi|260599084|ref|YP_003211655.1| alanyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260218261|emb|CBA33198.1| Alanyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 875

 Score =  994 bits (2569), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 566/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A   VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFQKLIKAVANVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD          
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDQTE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ V A+   G+ VE+  +GQ+  VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTARVTALFIDGKSVEQVAAGQQAVVVLDETPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    + D QK  + I  H   +  G+L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFTFTVNDTQKYGQAI-GHIGELTSGVLKVGEGVKAEVDQARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +   GLRFD +H + +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY DRVRV+S+     G  S+ LCGG H S TG+I L  IV
Sbjct: 629 NVMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A S +  Q+++L  L+  LK     +  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESANLSSKAIDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ +R  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTERVKAGELVGMIAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+  V S++
Sbjct: 862 AALGSVESWV 871


>gi|205830261|sp|Q1QMV7|SYA_NITHX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 891

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/901 (51%), Positives = 610/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI   DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ+E+     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A+  +TG    G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+  L  EMG A+PEL +A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+DI SF 
Sbjct: 361 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q+++ARA   G G   TE IWF L+EK GAT+F+GY+                  
Sbjct: 420 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G+  +   +G+   +V +QTPFY E+GGQ+GDTG   GDG+
Sbjct: 463 ------EIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD QKKA  +FVH   VE+G L   M+L L +D   R  +  NHSATHLLH AL  
Sbjct: 517 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + P+ LRFD  H+KPI++ EL+ IED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +GA AL G KY D VRVVS+          +    S  LCGGTHV  TG+I L+ +  
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ +G+RRIEA+TG  AR H     +  K+ A  L+ +  ++  R+  + EE +KL+ 
Sbjct: 697 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 756

Query: 773 I--HAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               A++KL +       +        +  +  M+  +  ++ K+LK++ D  +K++ SG
Sbjct: 757 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++ LV  S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|170732737|ref|YP_001764684.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|205830047|sp|B1K026|SYA_BURCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169815979|gb|ACA90562.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 874

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|68249409|ref|YP_248521.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81336165|sp|Q4QM86|SYA_HAEI8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68057608|gb|AAX87861.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 874

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE    GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEVGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|116689431|ref|YP_835054.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|116647520|gb|ABK08161.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
          Length = 897

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/912 (42%), Positives = 540/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|145628290|ref|ZP_01784091.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145638384|ref|ZP_01793994.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|144980065|gb|EDJ89724.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145272713|gb|EDK12620.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|309751524|gb|ADO81508.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 874

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 552/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLSNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQV-KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFHDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNTIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|78066024|ref|YP_368793.1| alanyl-tRNA synthetase [Burkholderia sp. 383]
 gi|77966769|gb|ABB08149.1| alanyl-tRNA synthetase [Burkholderia sp. 383]
          Length = 897

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKIVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS +G+I    IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRSGDIGFFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 765

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAV-ESGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|156932779|ref|YP_001436696.1| alanyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894]
 gi|205830089|sp|A7MJ41|SYA_ENTS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156531033|gb|ABU75859.1| hypothetical protein ESA_00569 [Cronobacter sakazakii ATCC BAA-894]
          Length = 875

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/910 (44%), Positives = 571/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A   VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFQKLIKAVANVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGVAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD          
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHTE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ V A+   G+ VE+  +GQ+  VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTAKVTALFVDGKSVEQVTAGQQAVVVLDETPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    + D QK  + I  H   +  G+L+    +   +D+  R ++ +NHSATH
Sbjct: 510 GELKGNGFTFTVNDTQKYGQAI-GHIGELASGVLKVGEGVKAEVDHARRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +   GLRFD +H + +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY DRVRV+S+     G  S+ LCGG H S TG+I L  IV
Sbjct: 629 NVMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A S +  Q+++L  L+  LK     +  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELVGMIAQQV-GGKGGGRPDMAQAGGSDAAALP 861

Query: 887 QAIAGVASFL 896
            A+  V S++
Sbjct: 862 AALGSVESWV 871


>gi|146341851|ref|YP_001206899.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|205829995|sp|A4YXQ6|SYA_BRASO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146194657|emb|CAL78682.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
          Length = 891

 Score =  993 bits (2567), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/897 (51%), Positives = 609/897 (67%), Gaps = 39/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL FF  NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY +D+EAF LWKKI+GL   +IIRI  +DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+E +G+R+IEIWNLVFMQ+EQ     R  LPK SIDTG GLER+A VLQ 
Sbjct: 181 DKIWGGPPGSAEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDLF  LI+A   +T    +G    + RVI DHLR+SSFLI+DG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL  EMG AYPELI+A+ LI+ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEGLIKETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L K ++ +GDVAF LYDT+G PLD+ QD L +RG++ +D  SF 
Sbjct: 361 KTLERGLAILDEKSASLSKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGIS-VDQASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G   TE +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMERQKAKARAAWAGSGEAATETVWFPLREKLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G  V+   +G+   +V +QTPFY E+GGQ+GDTG   G+G+
Sbjct: 463 ------ETAEGAVTALVKDGAEVDSLKAGESGAIVLNQTPFYGESGGQVGDTGVLTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R++ITD QKKA  +F H   VE+G L+    L L +D+  R  +  NHSATH+LH AL  
Sbjct: 517 RVRITDTQKKAGDLFAHIGTVEQGTLKLGTPLQLDVDHIRRSAIRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS ++PD LRFD  H KPIT+ EL  +ED  ND++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFVHPKPITAEELARVEDIANDVVLENAEVTTRLMGLDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ + SE
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDHGNNAMGWSVELCGGTHVKRTGDIGLIAVTSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+T + AR+H        K+ A+ L+ +   V  R+  + EE +KL+  
Sbjct: 697 SAVASGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARITALMEERKKLERE 756

Query: 774 H--AKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              A++KL +              ++A +  M+  +  V+ K+LKS++D  +K++ SG++
Sbjct: 757 LSDARKKLAMGGGAAAGGAAAGIREVAGIKLMARAVDGVEVKDLKSLVDEAKKQLGSGVV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +VG S++ KA V++ VT DL  RFNAV+L R +++ LGG GGGGRP MAQ+GGP+G
Sbjct: 817 AIVGRSEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGPDG 873


>gi|205830048|sp|A0K6N4|SYA_BURCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/912 (42%), Positives = 540/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|240850806|ref|YP_002972206.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267929|gb|ACS51517.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 890

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/911 (52%), Positives = 642/911 (70%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+ FL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+P Y+ 
Sbjct: 1   MNSVNNIRSIFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQPPYKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAILLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW++ISGL  +KI+RI T DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYQSDDVAAELWRRISGLPDEKIVRIATADNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ ++++R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQISQEKRVDLPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI ASE++TG++ +G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRALIAASEEITGIEAKGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  LLPAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLLWRLLPALNREMGQAYPELVRAESLISETLRLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   + L + + LNG+VAFKLYDT+G PLD+ QD+L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTDLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRGIS-VDVDTFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+  ARA+  G G   TEKIWFS+++K GAT+F+GY+                  
Sbjct: 420 KAMERQKEEARANWSGSGEAVTEKIWFSVRDKVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A+V  G++V+   SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 463 ------ETAKGILTALVCDGKLVDHISSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D Q+K +G+F+H   V+ G       + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 IFEVHDTQRKGDGVFIHIGEVKSGQASRSDCVELTVDVVRRKKIRGNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++PD LRFD +H K ++  ELK IED  N+II QN  V+TR+M  +DA
Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSPEELKKIEDLANEIILQNSRVITRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+             S  LCGGTHV  TG+I L++I SES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGEPLEQRRLKKHWSIELCGGTHVERTGDIGLIHIFSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG+ AR +L  QDE++  +A  LK S   V  RV  + ++ RKL+   
Sbjct: 697 SVSAGVRRIEALTGKEARLYLSRQDERIHEIADLLKTSSAGVEERVRILLDDRRKLEKEL 756

Query: 775 AKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + ++ +      +       I  ++F   ++  +  ++LK+++D+ +K+I SG++  
Sbjct: 757 NDVRKKMMLSGGITERSQGDITIINGLSFTGRVVKNILPRDLKALVDSEKKQIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +S++ K S ++ VT+DL D+ NAVDL  + + +LGG GGGGRP MAQ+GGP GNKAD+
Sbjct: 817 ISVSEDGKGSAVVGVTDDLTDKLNAVDLVHILSGMLGGKGGGGRPDMAQAGGPEGNKADE 876

Query: 888 AIAGVASFLKK 898
           A A +  FL+K
Sbjct: 877 AFAALKDFLEK 887


>gi|238027796|ref|YP_002912027.1| alanyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876990|gb|ACR29323.1| Alanyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 874

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 539/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  +W+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYSWELLTSVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KEKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK SIDTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEGRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFLETIEHGMTILEAALAELDAKGGKLLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L      T F GY+ L        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LDYSGAKTTFHGYEKLALDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V EA +G++  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKIVALYVGGTAVNEAKAGEQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  VE+G L+    L   +D + R +   NHSATH
Sbjct: 509 GTLANAAARFAVEDTLKVQADVIGHHGTVEQGALKVGDVLRAEVDAERRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD  H+ P++  E++ +E  VN  I  N P + 
Sbjct: 569 LMHKALREVLGGHVQQKGSLVDAEKTRFDFAHNAPLSDEEIRRVEAIVNAEILANAPGII 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    IV
Sbjct: 629 RNMSYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D +L + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQELDARLSTAAAMLKAQPAELTQRIAQVQDQLKSLE 742

Query: 772 LIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L  +  D    +  DV     ++  +   DSK L+   D L+ K++   ++
Sbjct: 743 KELAALKSRLASSQGDELAQQAVDVKGLRVLAATLEGADSKTLRETADKLKDKLKHAAVV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860

Query: 887 QAIAGVASFL 896
           +A+AGVA+++
Sbjct: 861 EALAGVAAWV 870


>gi|304391435|ref|ZP_07373377.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303295664|gb|EFL90022.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 884

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/906 (51%), Positives = 609/906 (67%), Gaps = 34/906 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F+KNGH  + SS L+P NDPTLMFT +GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSTFLSYFEKNGHAAVDSSPLVPRNDPTLMFTAAGMVQFKNLFTGLETRNYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+E+ +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEFAWNLLTEEYGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY +D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DASRLLVTVYHDDDEAFDLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFEQVTVDERVNLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI ASEQ TG+  + N   +HRVI DHLR+S FLIADG+LP NEGRGY
Sbjct: 241 THDNYEIDLFKALISASEQATGVGSDDNTRASHRVIADHLRASCFLIADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG A+PEL + + L+ ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHASLLGAQDPLMYRLVPALVAQMGEAFPELRRTQSLMTETLNLEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LLD   + L   + L+G VAFKLYDT+G PLD+ QD L  R +  +D   ++
Sbjct: 361 KTLTRGLDLLDTASADLKAGDALDGRVAFKLYDTYGFPLDLTQDALRRRDIT-VDTDEYS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQ++ ARA   G G    + IWF L+EK+GAT+F+GY+                  
Sbjct: 420 TAMEEQKAVARASWAGAGGAADDAIWFKLREKHGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AI+Q G  V  A  G +V V+ +QTPFYAE+GGQ+GDTG  +    
Sbjct: 463 ------EKAEGSVLAILQDGAEVSTAKKGDEVSVILNQTPFYAESGGQMGDTGTLVVGET 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L ITD +K+ +G+FVH   V+ G L+      L ID+  R +L  NHSATHL+H AL  
Sbjct: 517 KLTITDTKKRGDGLFVHMGTVDSGTLKVGDGASLEIDHARRSKLRSNHSATHLVHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS + P+ LRFD +HSKP+ + E++ IE   N+ + QN  V T +M  +DA
Sbjct: 577 TLGDHVSQKGSLVAPERLRFDFSHSKPVETEEMRRIEAMANEYVLQNSQVSTTLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           I  GA A  G KY D VRVVS+    E  +    S  LCGGTHV +TG+I L+ +V ES+
Sbjct: 637 IELGAQAQFGEKYGDEVRVVSMGKVGEGNEAKAWSLELCGGTHVKNTGDIGLVTVVGESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TGQ AR +L+ QDE L+S A+ LK +  +V  RV  + +E +KL+   A
Sbjct: 697 VSSGVRRIEALTGQAAREYLLQQDELLRSTAAKLKTTPADVPTRVAALIDERKKLERELA 756

Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K QL +      + +   I  V F+  ++  V  ++LK ++D  + +I SG++ +   
Sbjct: 757 EAKKQLALGVDGGTEAAAEDIGGVQFVGRVLQGVSPRDLKGLVDEEKTRIGSGVVAIAAN 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +++ K +V++ VT+DL DRF+AV L R  ++ LGG GGGGRP MAQ+GGP+G   D A+ 
Sbjct: 817 NEDGKGAVVVGVTKDLTDRFDAVVLVRAGSEALGGKGGGGRPDMAQAGGPDGANVDAALD 876

Query: 891 GVASFL 896
            V + L
Sbjct: 877 AVRAAL 882


>gi|49475765|ref|YP_033806.1| alanyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|59798532|sp|Q6G2Z4|SYA_BARHE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49238572|emb|CAF27813.1| Alanyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 887

 Score =  993 bits (2566), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/910 (52%), Positives = 647/910 (71%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++FQ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y+ 
Sbjct: 1   MNSVNSIRSTFLDYFQLNGHKIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ + +LW+KISGL  +KI+RI T DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PEDKLLVTVYHNDDVSTELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK++R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSAYEDGDRFIEIWNLVFMQYEQVNKEKRVELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI  S+++TG+K  G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 GHDNYDIDLFRALIAVSQEITGVKATGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWRLLPVLIHEMGQAYPELVRAESLISETLKLEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL    + L + + LNG++AFKLYDT+G PLD+ QD L  RG++ +D+ +FN
Sbjct: 361 KTLERGLGLLSEASTDLKEGDHLNGEIAFKLYDTYGFPLDLTQDALRCRGIS-VDVAAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q+++ARA+  G G   TE IWFS++++ GAT+F+GY+                  
Sbjct: 420 KAMEGQKAKARANWSGSGETVTEAIWFSVRDQLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A+V+ GEIV++  SGQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 463 ------EKSEGILTALVRDGEIVDDISSGQKAILVVNQTPFYGESGGQIGDSGTISGKNF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+F+H   V+ G  R    + LT+D   R+++ +NHSATHLLH AL  
Sbjct: 517 VFEVHDTQKKADGVFIHIGEVKSGQARMSECVELTVDGVRRKKIRVNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS ++PD LRFD +H K ++  EL+ IED  N+I+ QN  V TR+M  +DA
Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSLEELEKIEDLANEIVLQNSEVTTRLMLVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+       +     S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNRLEKGKLKSRWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG  AR +L  QD ++  +A  LK S  +V  RV  + E+ RKL+   
Sbjct: 697 SVAAGVRRIEALTGTAARLYLSRQDARVHEIADLLKTSATDVEERVRILLEDRRKLEKEL 756

Query: 775 --AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++K  L+   +   +     I  ++FM  ++  +  ++LK+++D+ +KKI SG++  
Sbjct: 757 NDERKKSVLSGGIVKSDQEDITIINGISFMGRVVKNISPRDLKTLVDSGKKKIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +G+S++ K S ++ VT+DL  + NAVDL R+ + +LGG GGGGRP MAQSGGP GNKAD+
Sbjct: 817 IGVSEDGKGSAVLGVTDDLTHKLNAVDLVRILSGILGGQGGGGRPDMAQSGGPKGNKADE 876

Query: 888 AIAGVASFLK 897
           A+A + + L+
Sbjct: 877 ALAVLKASLE 886


>gi|54310165|ref|YP_131185.1| alanyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|46914606|emb|CAG21383.1| putative alanyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 906

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 534/910 (58%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 36  MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 95

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 96  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 155

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q RL +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 156 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSE 215

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 216 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 275

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 276 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 333

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG +      L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 334 NEGRGYVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKI 393

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ FG+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 394 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 451

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A+E QR RAR      G    E I   +      T+F GY             
Sbjct: 452 DEEGFNNAMEAQRQRAREAGK-FGVDYNESIKVDV-----NTEFCGY------------- 492

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G 
Sbjct: 493 ----------TGTAAQSSIVALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 542

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     ++D QK       H   + +G L     L   +D   R  +++NHSATHLL
Sbjct: 543 LTAENTVFNVSDTQK-FGAAIGHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLL 601

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD ++ + +   +L+ IE  VN+ I  N  + T I
Sbjct: 602 HSALRNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 661

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE
Sbjct: 662 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 716

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  
Sbjct: 717 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 776

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L  ++         +I  V  +   +   D+K L+ ++D ++ K+ SGI++L 
Sbjct: 777 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 836

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 837 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 894

Query: 889 IAGVASFLKK 898
           +  V  +L +
Sbjct: 895 LESVTPWLTE 904


>gi|307730458|ref|YP_003907682.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584993|gb|ADN58391.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 890

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 538/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 17  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 77  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 137 KEKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 197 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 257 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLANN--SLKVIADHIRACSFLIVDGVIPG 314

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MGSAYPEL  A+  + + LR 
Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQARVTDVLRQ 374

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L K     L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 375 EEERFFETIEHGMSILENALAELEKKGARTLDGELAFKLHDTYGFPLDLTADVCREREVT 434

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA      S         L+     T F GY+ +        
Sbjct: 435 -VDEAAFDEAMARQREQARAAGKFKMSQG-------LEYSGAKTTFHGYEEIVFDD---- 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+E   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 483 ------------------AKVVALYVDGASVQEVAHGQQTVVVLDHTPFYAESGGQVGDQ 524

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  +TD  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 525 GLLANASVRFAVTDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ ++L+
Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLE 758

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++A V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 818

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLG 876

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 877 AALAGVKGWVE 887


>gi|323526792|ref|YP_004228945.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383794|gb|ADX55885.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 890

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 539/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 17  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 77  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 137 KEKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 197 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 257 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 314

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MGSAYPEL  A+  + + LR 
Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQQRVTDVLRQ 374

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L K   + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 375 EEERFFETIEHGMSILENALAELEKKGRKTLDGELAFKLHDTYGFPLDLTADVCREREVT 434

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA           K+   L+     T F GY+ +        
Sbjct: 435 -VDEAAFDEAMARQREQARAAGK-------FKMAQGLEYSGAKTTFHGYEEIVFDD---- 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+E   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 483 ------------------AKVVALYVDGASVQEVAQGQQAVVVLDHTPFYAESGGQVGDQ 524

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K    +  HH  +E+GIL+    +   ID   R + + NHSATH
Sbjct: 525 GLLANASVRFAVADTLKVQADVVGHHGTLEQGILKVGDVVKAEIDAVRRARTARNHSATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + AS LK     +  R+ ++ ++ ++L+
Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAASVLKAQPSELTQRITQVQDQVKQLE 758

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++A V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRKTVDKLKDKLKSAAIV 818

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 876

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 877 AALAGVKGWVE 887


>gi|168235854|ref|ZP_02660912.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737652|ref|YP_002115779.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713154|gb|ACF92375.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290777|gb|EDY30131.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 876

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/910 (44%), Positives = 572/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  D+N +  ++SE   ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELASIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|168230882|ref|ZP_02655940.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471872|ref|ZP_03077856.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458236|gb|EDX47075.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205334599|gb|EDZ21363.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 876

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|330816605|ref|YP_004360310.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327368998|gb|AEA60354.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 874

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/910 (41%), Positives = 536/910 (58%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  +W+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYSWELLTSVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY +D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KEKLWVTVYHDDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK SIDTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGVADLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGGAYPELKEAEGRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFLETIEHGMTILDAALAELDAKGAKQLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEDIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V++A +G++  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKIVALYVGGTAVQQAQAGEQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  VE+G L+   +L   ID   R +   NHS TH
Sbjct: 509 GVLANAATRFAVEDTLKVQADVIGHHGTVEQGTLKVGDTLRAEIDAARRARTERNHSVTH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P++  E++ +E  VN  I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMSDDEIRRVEAIVNAEILANSPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 SNMSYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVRRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D +L + AS LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNALRYVQELDARLNTAASMLKAQPAELTQRIGQVQDQVKSLE 742

Query: 772 LIHA--KRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K KL  +  D    +  DV  +   +  +   DSK L+  +D L+ K++   ++
Sbjct: 743 KELAALKSKLASSQGDELAQQAVDVKGVQVLAATLDGADSKTLRETVDKLKDKLKHAAVV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFL 896
            A+AGV +++
Sbjct: 861 AALAGVQAWV 870


>gi|325529341|gb|EGD06275.1| alanyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 874

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKDVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT      NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTETSDLNNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHQLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P++  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLSDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|119472239|ref|ZP_01614418.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119445057|gb|EAW26352.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 866

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/903 (44%), Positives = 549/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIKFAWEFLTEVVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           Q +L +T+Y +DEEAF+ W K  GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 QEKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS  E+G+R+IEIWNLVFMQ+ +QN      LPK S+DTGMGLER++ +LQ  
Sbjct: 184 HIWGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERISAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+  VT    +  +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQGLIAAAASVTNA--QDMDDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAQGAFFFKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L K +++ GD+ FKLYDT+G P D+  D+   R +  ID   F +
Sbjct: 362 TLERGLAILEESLSDL-KGDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHKGFEE 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T F GYD    S              
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNEQLKSDKHTDFKGYDSTHYS-------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  +   GE V+    GQ+  V+ D+TPFYAE+GGQ GDTG     G  
Sbjct: 460 ---------ATVVEVFAGGEAVQLLEDGQEGIVILDRTPFYAESGGQTGDTGTITVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K     F HH  V +G +     +  TID   R  +  NH+ATH+LH AL  +
Sbjct: 511 FNVTNTTKLGNA-FAHHGTV-QGRIGVNDKVDATIDDARRENIKKNHTATHILHEALRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HVSQ GS +  D LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA 
Sbjct: 569 LGEHVSQKGSLVQADRLRFDFSHFEAVTKDELRDIERVVNDEIRRNFALNTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--K 778
           RRIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+   A+   K
Sbjct: 684 RRIEAVTGADAVAYVSEQEQQLSDVAALVKGDSASVLEKVTALLEKSKGLEKQIAQLNDK 743

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L           I ++N +  +++ V+    K L+ ++D L+ KI SG+I L G++   K
Sbjct: 744 LASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A  + GG GGGRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPQNLAAALDSVTAW 861

Query: 896 LKK 898
           L +
Sbjct: 862 LTE 864


>gi|168262064|ref|ZP_02684037.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|200387922|ref|ZP_03214534.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605020|gb|EDZ03565.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205349249|gb|EDZ35880.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|322614354|gb|EFY11285.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322621581|gb|EFY18434.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624442|gb|EFY21275.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628773|gb|EFY25556.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633500|gb|EFY30242.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635924|gb|EFY32632.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639632|gb|EFY36317.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646815|gb|EFY43318.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650583|gb|EFY46988.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654805|gb|EFY51124.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659025|gb|EFY55278.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664408|gb|EFY60602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668343|gb|EFY64500.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673677|gb|EFY69778.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322681432|gb|EFY77464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322683834|gb|EFY79844.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193777|gb|EFZ78980.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200247|gb|EFZ85329.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323203250|gb|EFZ88279.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205503|gb|EFZ90468.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212791|gb|EFZ97602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216317|gb|EGA01044.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221065|gb|EGA05496.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226886|gb|EGA11068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230830|gb|EGA14948.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234819|gb|EGA18905.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238858|gb|EGA22908.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241558|gb|EGA25589.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248295|gb|EGA32231.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251121|gb|EGA34994.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255840|gb|EGA39588.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263139|gb|EGA46677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264356|gb|EGA47862.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271183|gb|EGA54611.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 876

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|319775253|ref|YP_004137741.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|317449844|emb|CBY86053.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047]
          Length = 874

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGNHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA++ S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQSASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|172060378|ref|YP_001808030.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|205829999|sp|B1YNJ6|SYA_BURA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171992895|gb|ACB63814.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 874

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKLGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|290476264|ref|YP_003469168.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289175601|emb|CBJ82404.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 887

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/910 (42%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 15  KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRPYSRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + F+
Sbjct: 75  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGKEWFN 134

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 135 LPKEKLWVTVYETDDEAYDIWHKEVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 194

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 195 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLE 254

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NYDIDLF  LI +  +VTG     N   + RVI DH+RS +FL+ DG++
Sbjct: 255 RLTAVLQHVNSNYDIDLFCDLIASVAEVTGATDLTNK--SLRVIADHIRSCAFLVCDGVV 312

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L
Sbjct: 313 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVAPLIKIMGSAGDELKRQQSLVEQVL 372

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 373 KTEEEQFARTLERGLQLLDEELEKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 431

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F+ A+E QR RAR  S G G+   E+I        G + F GY+          
Sbjct: 432 -VDEVGFDVAMENQRRRARESS-GFGTDYNEQIKVD-----GRSDFSGYE---------- 474

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI + GE +++  +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 475 -------------HNSQQATVMAIFRHGEAIDQIHAGEEAIVILDKTAFYAESGGQVGDT 521

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++TD QK  + I  H   +  G L    ++   I+   R  + +NHSATH
Sbjct: 522 GNLSNGNGIFEVTDTQKYGQAI-GHIGKLINGTLNVNNTINAEINRVRRDSIRLNHSATH 580

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +   +++ +E+ VN+ I +NL +VT
Sbjct: 581 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKLEQIRQVENLVNEEIRKNLSIVT 640

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E+A   GA AL G KY+++VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 641 ELMELEEAKTKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIS 695

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITGQ A + +  Q + L+ +A  +K    ++  +V+   +  ++L+
Sbjct: 696 SESGTAAGIRRIEAITGQTALNSVYQQTDLLQDIAHLVKSDISSLNEKVKTTLDRTKQLE 755

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K Q   ++         +I  V  +   + + + K L++++D L+ ++ S II+
Sbjct: 756 KELQHLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDTEPKMLRTMVDELKNQLGSAIIV 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K ++++ +T+DL  R  A DL    A+ + GG GGGRP +AQ+GG +     
Sbjct: 816 LSTVTGD-KVTLIVGITKDLTARIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVAALP 873

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 874 SALASVEEWV 883


>gi|257465412|ref|ZP_05629783.1| alanyl-tRNA synthetase [Actinobacillus minor 202]
 gi|257451072|gb|EEV25115.1| alanyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 874

 Score =  991 bits (2562), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 546/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FFQ  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFQSKGHTVVESSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLPG   E+G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ID+F+ LI+   ++  +K   N   + RVI DH+RS S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTIAELLNVKDLDNK--SLRVIADHIRSCSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L   MG A   + Q +  I++T
Sbjct: 299 APSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+GDVAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGDVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   ++ QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 -VIDEAGFEAEMQAQRERAKASS------NFGVDYNNVIKVDGKTDFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G  V+   SG+   ++ D+TPFYAE GGQ+GD
Sbjct: 464 ----------------TAEATVVGLFSNGNAVDVVKSGENAIIILDKTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +  +  + D QK  + +F H   +E G L+    +   +  + R  + +NHSAT
Sbjct: 508 SGRISTEFCQFHVVDTQKYGQ-VFGHIGQIEAGELKVGDKVTAEVAAERRHSIQLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV Q GS +  +GLRFD +  + IT  +L++IE  VN  I +N+ VV
Sbjct: 567 HLLHSALREVLGTHVMQKGSLVNENGLRFDFSQPEAITKEQLEAIERIVNAKIRENIEVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  E+A A GA AL G KY D VRVV     D  V S  LCGGTHV  TG+I L  I
Sbjct: 627 IEEMGIEEAKAKGAMALFGEKYGDVVRVV-----DMSVFSIELCGGTHVKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RR+EAITG+ A + L    +  +  A  LK    N+V +++++ ++ ++L
Sbjct: 682 TSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKRL 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +   +          +I  VN +   +   + K L++++D L+ ++ S I+
Sbjct: 742 EKELQQLKEKQASQAGADLAKQAKQINGVNVVVTQLENTEPKVLRTMVDDLKNQLGSAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   + K ++++ V+ DL  +  A +L    A  + GG GGGRP MA +GG      
Sbjct: 802 VL-GTVADDKVNLIVGVSSDLTTQIKAGELVGEMATYV-GGKGGGRPDMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
            +A+     +++
Sbjct: 860 AKALNFAQEWIQ 871


>gi|291618585|ref|YP_003521327.1| AlaS [Pantoea ananatis LMG 20103]
 gi|291153615|gb|ADD78199.1| AlaS [Pantoea ananatis LMG 20103]
          Length = 875

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   
Sbjct: 3   KSTAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI+A  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFQTLIEAVAKVTGATDLNNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+E+F KTL+RGL LLD  L+ L + + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEEQFAKTLERGLALLDEELAKL-QGDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S G G+  +  I         A+ F GY+ L        
Sbjct: 420 -IDEAGFEKAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYEQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VK +   GE V+   +GQ   +V D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LTATVKGLFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GELKGNNALFSVQDTQKYGQAI-GHIGKLSSGQLRVGDCLEAVVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ E A A GA AL G KY+ +VRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 RVMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ +A  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++          +  V  +   +S  D K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQHAAQESAQLGNHAVDVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV-GGKGGGRPDMAQAGGSDATALK 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 GALAGVEGWV 871


>gi|168820492|ref|ZP_02832492.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342835|gb|EDZ29599.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320087230|emb|CBY96995.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 876

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|304399190|ref|ZP_07381057.1| alanyl-tRNA synthetase [Pantoea sp. aB]
 gi|304353244|gb|EFM17624.1| alanyl-tRNA synthetase [Pantoea sp. aB]
          Length = 875

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/910 (44%), Positives = 557/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GHE++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFS 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWANEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ LIQA  QVTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYEIDLFQKLIQAVAQVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEELQRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+++F +TL+RGL LLD  L  L + + L+G++ F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEDQFARTLERGLALLDEELEKL-QGDTLDGEIVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+E+QR RAR  S G G+  +  I         A+ F GYD L        
Sbjct: 420 -IDEAGFEQAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYDQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VKA+   GE V+E  +GQ   VV D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LAATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GLLKGKNAEFSVQDTQKYGQAI-GHVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ + A + GA AL G KY+ RVRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 EVMDLDAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ LA  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDHVRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++      +   +  V  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESASLSSNAIDVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL  R  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTGRVKAGELIAGLAQQV-GGKGGGRPDMAQAGGTDAKGLK 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 GALAGVESWV 871


>gi|121601991|ref|YP_989027.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|205829988|sp|A1USS4|SYA_BARBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120614168|gb|ABM44769.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 886

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/909 (51%), Positives = 634/909 (69%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKHSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+ A  LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ +K++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++ G+K  G+   +HRVI DHLRSS+FLIADGI+P+NEGRGY
Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  + LM  L+P L +EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   +HL + +  NG+VAFKLYDT+G PLD+ QD L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE +WFS++++ GAT+F+GY+                  
Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A+++ GE+V+    GQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 463 ------EKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK + +F+H   ++ G  +    + L +D   RR++  NHSATHLLH +L  
Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV Q GS ++PD LRFD +H K I+S ELK IED  NDI+ QN  V TR+M  +DA
Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY--EDGG---VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRV+S+    E  G     S  LCGGTHV  TG+I L++I+SE+
Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+T   AR +L GQD ++  +A  LK S  +V  RV+ + +E RKL+   
Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756

Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +++K+ LN   ++       I  ++FM  ++S +  K+LK+++D+ +KKI SG++  +
Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S++ K S ++ VT+DL D  NAVDL R+ +  LGG GGGGR  MAQ+GG  G KAD+A
Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876

Query: 889 IAGVASFLK 897
           +  +   LK
Sbjct: 877 LVALKDSLK 885


>gi|91976212|ref|YP_568871.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|123735560|sp|Q13AB9|SYA_RHOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91682668|gb|ABE38970.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
          Length = 891

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/901 (51%), Positives = 613/901 (68%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYSEDDEAFGLWKKIAGLPESKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSLEEDGDRFIEIWNLVFMQFEQVAPGNRTPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A  ++TG   +G    + RVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYEIDLFQALIRAIAELTGADPQGEQKGSLRVIADHLRAASFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAEAMIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L K ++ +GD AF LYDT+G PLD+ QD L  RG++ +DI SF 
Sbjct: 361 KTLERGLTILDEKSGSLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L++K GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLRDKLGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G+ VE   +G    +V +QTPFYAE+GGQ+GDTG   G+G+
Sbjct: 463 ------ETAEGVVTALVKDGKEVEALKAGDAGAIVLNQTPFYAESGGQVGDTGVLTGEGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD  KKA  +FVH   VE G ++ E +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGTVKPEAALALEVDHSRRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITQDELRRVEDIANDIVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ +  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKASREHGSNAFGWSVELCGGTHVRRTGDIGLISVTGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR          K+ A+ L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRHARQSANAAMATAKAAAAELRTTLDDMPARIASLMDERKKLERE 756

Query: 774 H--AKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              A++KL                   +  V  ++  +  ++ K+LKS++D  +K++ SG
Sbjct: 757 LSDARKKLAMGGSGAAGAADGGADVRDVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+
Sbjct: 817 VIALVAKSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGS 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|254489976|ref|ZP_05103171.1| alanyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224465061|gb|EEF81315.1| alanyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 858

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/893 (45%), Positives = 541/893 (60%), Gaps = 47/893 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FL+FF   GHE++ SS L+P NDPTL+FTN+GMV FK  F GQE   Y    T Q+CVR
Sbjct: 1   MFLDFFASKGHEVVASSPLVPANDPTLLFTNAGMVQFKETFLGQETRKYTRAVTTQRCVR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
           AGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L   +L+ITV
Sbjct: 61  AGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTETLALPPEKLWITV 120

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           ++ED+EA  +W K  G+SAD+  RI   DNFWSM +TGPCGPCSEIF+D GE I GG PG
Sbjct: 121 FEEDDEAADIWLKEIGVSADRFSRIGAKDNFWSMGDTGPCGPCSEIFYDHGEDIAGGPPG 180

Query: 190 -SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248
              E+G+RYIEIWNLVFMQF++        LPK S+DTGMGLER+A VLQ   NNY+IDL
Sbjct: 181 TPEEDGDRYIEIWNLVFMQFDRSADGTLTPLPKPSVDTGMGLERLAAVLQHVHNNYEIDL 240

Query: 249 FKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           F+HLI+A + ++G +   N   + RVI DH+RS SF+IADG+ P+NEGRGYVLRRI+RRA
Sbjct: 241 FQHLIEAIQALSGTEDSSN--FSLRVIADHIRSCSFMIADGVHPSNEGRGYVLRRIIRRA 298

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           + +   LG  E     L+  L  EMG A+PEL QA+ L+E+ L  E+ RF  TLD GL +
Sbjct: 299 IRHGHKLGLKEAFFHKLVQPLVNEMGDAFPELKQAQALVEKALLQEENRFADTLDNGLRI 358

Query: 369 LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
           LD  +  +G  E + G+  F LYDT+G P+D+  DI   RGL  IDI  F +A+E QR+R
Sbjct: 359 LDQAIEDMGDKE-IPGETVFLLYDTYGFPIDLTADIARERGLT-IDIAGFERAMEAQRTR 416

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
           AR+ S   G G +E+I        G T F GY   +                        
Sbjct: 417 ARSASQFAG-GLSEQIAID-----GETAFCGYSQTQ-----------------------E 447

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           +  + AI+  GE V++  +GQ+  +V D TPFYAE+GGQ+GD G    D     ++D +K
Sbjct: 448 TGTITAIIADGEHVDQLEAGQEGVLVLDHTPFYAESGGQVGDHGEITSDNASFTVSDTRK 507

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           + +  F H    E G      S+   ID  NR+  ++NHSATHLLH AL  +LG HV Q 
Sbjct: 508 QGKA-FTHIGRCEHGQFHVGQSVTAQIDESNRQATALNHSATHLLHAALRNVLGDHVMQK 566

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           GS + P  LRFD +H +P+T  +L  IE  VN  I  N PV T++M  E+A  SGA AL 
Sbjct: 567 GSLVDPQRLRFDFSHFEPVTPDQLHDIERMVNQQIRLNHPVDTKLMAIEEAKKSGAMALF 626

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G KY+D VRV+S+     G  S  LCGGTHV  TG+I LL I +E+ I +G+RRIEA+TG
Sbjct: 627 GEKYDDEVRVLSM-----GDFSIELCGGTHVQHTGDIGLLKITAEAGIASGVRRIEAVTG 681

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDL 786
            +A  ++      L  ++  LK    NV  +   + +  R+L+      K KL  +  D 
Sbjct: 682 DKALDYIDTTQSTLNQVSDLLKAKPDNVQDKAALLVQRSRELEKELESLKAKLASSAGDD 741

Query: 787 SCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             + + ++N +  +   +   D K L+  +D L+ K+ +  I+L  + K++K +++  VT
Sbjct: 742 LANSVQEINGIKVLASSLEGADGKALREAVDQLKNKLGTAAIVLTAV-KDEKITIIAGVT 800

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +D+ D+  A DL    A  + GG GGGRP MAQ GG        A+A V  ++
Sbjct: 801 KDITDKIRAGDLVGHVASQV-GGKGGGRPDMAQGGGNEPQNLAAALASVTDWV 852


>gi|170695494|ref|ZP_02886639.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139685|gb|EDT07868.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 890

 Score =  991 bits (2561), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 17  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 77  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 136

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 137 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 196

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 197 IFYDHGPDVWGGPPGSPDEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 256

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 257 AAVLQHVHSNYEIDLFQALINAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 314

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG AYPEL  A+  + + LR 
Sbjct: 315 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGGAYPELKDAEQRVTDVLRQ 374

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+ L K   + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 375 EEERFFETIEHGMSILDNALAELDKKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 434

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA           K+   L+     T F GY+ +        
Sbjct: 435 -VDEAAFDEAMARQREQARAAGK-------FKMAQGLEYSGAKTTFHGYEEIVFDD---- 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 483 ------------------AKVVALYVDGASVQQVTHGQQAVVVLDHTPFYAESGGQVGDQ 524

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 525 GLLANASVRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS + PD  RFD  H+ P+T  +++ +E  VN  +  N P + 
Sbjct: 585 LMHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEQIVNAEVLANAPGIV 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 645 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 698

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ ++L+
Sbjct: 699 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLE 758

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++A V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 759 KELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 818

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 819 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 876

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 877 AALAGVKGWVE 887


>gi|204928130|ref|ZP_03219330.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204322452|gb|EDZ07649.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 876

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDRTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|329122821|ref|ZP_08251393.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|327472085|gb|EGF17523.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 874

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             I+  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-INEQAFDRKMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|16766133|ref|NP_461748.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|168245264|ref|ZP_02670196.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168464053|ref|ZP_02697970.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|194443356|ref|YP_002042068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450006|ref|YP_002046787.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197264802|ref|ZP_03164876.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|20532254|sp|Q8ZMK6|SYA_SALTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16421372|gb|AAL21707.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194402019|gb|ACF62241.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408310|gb|ACF68529.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195633250|gb|EDX51664.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197243057|gb|EDY25677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205335995|gb|EDZ22759.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|261247963|emb|CBG25796.1| AlaRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994942|gb|ACY89827.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159387|emb|CBW18905.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913845|dbj|BAJ37819.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223380|gb|EFX48446.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323131178|gb|ADX18608.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 876

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|16761603|ref|NP_457220.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143087|ref|NP_806429.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213052376|ref|ZP_03345254.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213426121|ref|ZP_03358871.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213579902|ref|ZP_03361728.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213622611|ref|ZP_03375394.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|213852307|ref|ZP_03381839.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|289824467|ref|ZP_06544043.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|20532252|sp|Q8Z4D5|SYA_SALTI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25293091|pir||AF0843 alanine-tRNA ligase (EC 6.1.1.7) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503904|emb|CAD05933.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138720|gb|AAO70289.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 876

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|269101880|ref|ZP_06154577.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161778|gb|EEZ40274.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/910 (42%), Positives = 550/910 (60%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT   +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKYAWEFLTTVLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +T+Y+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 EDRLLVTIYESDDEAFEIWNKEVGIPADRIVRIGDNKGAPFASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G+ I GG PG   E+G+R+IEIWN VFMQ+ +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFFDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQYNRQADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+FK LI+ +  + G  Y+  +  + RV+ DH+RS ++LIADG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFKTLIKDAADIIG--YDDLSNQSLRVVADHIRSCAYLIADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGTAGSELKKQQEMVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TLDRGL +L+  L +L    IL+G+  FKLYDT+G P D+  D+   RG   I
Sbjct: 361 EEENFGRTLDRGLTILNEALDNL-DGSILDGETVFKLYDTYGFPADLTNDVARERGFT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQR RAR       +G     + ++ +    T+F GY+   G        
Sbjct: 419 DEEGFEAAMEEQRQRAR------DAGQFGVDYNNVIKVDADTEFKGYEATDG-------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            ++ AI + GE V+   +G++  +V DQTPFYAE+GGQ GDTG 
Sbjct: 465 ---------------EGVIVAIYRDGEEVDALAAGEEAIIVLDQTPFYAESGGQCGDTGA 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G+   + D QK    I  H   +  G L+    L  T+D+  R  +S+NHSATHL+
Sbjct: 510 LAAAGVAFTVADTQKFGHAI-GHKGTLTEGALKVGDKLAATVDHVRRGAISLNHSATHLM 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD +H + +   +L+ +E  VND I  N  + T I
Sbjct: 569 HAALRKLLGEHVAQKGSLVKPDSLRFDFSHLEAVKPEQLREVERMVNDQIRLNHAIDTEI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D+VRV+S+     G  S+ LCGG H   TG+I L  IVSE
Sbjct: 629 MDIEAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHAKRTGDIGLFKIVSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  QDE+L   A  +K    +VV +VE +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIEALHAQDEQLAKAARLVKSDTASVVNKVEALVSHSKQLEKE 743

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  ++         +I  V  +   +   D+K L+ ++D L+ ++ SGI++L 
Sbjct: 744 IQQLKDKLAAQEGAGLINQAQEINGVKVLIAKLDGADNKALRGMVDELKNQLSSGIVVL- 802

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G   + K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG + +    A
Sbjct: 803 GNVSDDKVGLIAGVTKDLIGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDASALPAA 861

Query: 889 IAGVASFLKK 898
           +    +++++
Sbjct: 862 LESAKAWIEE 871


>gi|206559783|ref|YP_002230547.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|198035824|emb|CAR51715.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 874

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTAVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|107022482|ref|YP_620809.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|105892671|gb|ABF75836.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
          Length = 897

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 24  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 83

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 84  TTAQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 143

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 144 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 203

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 204 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 263

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 264 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 321

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 322 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 381

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 382 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 441

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 442 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 489

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 490 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 531

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 532 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 592 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 652 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 705

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 706 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 765

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 766 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 825

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 826 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 883

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 884 GALAGVKGWVEE 895


>gi|238909593|ref|ZP_04653430.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 876

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|322677738|gb|EFY73801.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
          Length = 876

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRF+ +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFNFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|240949596|ref|ZP_04753931.1| alanyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240295854|gb|EER46530.1| alanyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 874

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 548/912 (60%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FFQ  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFQSKGHTVVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLPG   E+G+R+IE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ID+F+ LI+   ++  +K   N   + RVI DH+RS S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTVAELLNVKDLDNK--SLRVIADHIRSCSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L   MG A   + Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + +++ L+GDVAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENKTLSGDVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A ID   F   ++ QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 A-IDEAGFEAEMQAQRERAKASS------NFGVDYNNVIKVDGKTNFIGYDNL------- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G  V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 464 ----------------TAEATVVGLFSNGNAVDVIKSGENAIIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +  +  + D QK  + +F H   +E G L+    +   +  + R  + +NHSAT
Sbjct: 508 SGRISTEFCQFNVADTQKYGQ-VFGHIGQLEAGELKVGDKVTAEVAAERRHSIQLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHV Q GS +   GLRFD +  + IT  +L+ IE  VN  I +N+ VV
Sbjct: 567 HLLHSALRKVLGSHVMQKGSLVNEKGLRFDFSQPEAITKEQLEEIERIVNAKIRENIQVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M  E+A A GA AL G KY D VRVV     D  V S  LCGGTHV  TG+I L  +
Sbjct: 627 IEEMGIEEAKAKGAMALFGEKYGDIVRVV-----DMSVFSIELCGGTHVKRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RR+EAITG+ A + L    +  +  A  LK    N+V +++++ ++ ++L
Sbjct: 682 TSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKRL 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +   +          +I  VN +   +   + K L++++D L+ ++ S I+
Sbjct: 742 EKELQQLKEKQASQAGADLAKQAKQINGVNVVVTQLENAEPKVLRTMVDDLKNQLGSAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   ++K ++++ V+ DL  +  A +L    AK   GG GGGRP MA +GG      
Sbjct: 802 VL-GTVVDEKVNLIVGVSSDLTTQIKAGELVGEMAK-CVGGKGGGRPDMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
            +A+     +++
Sbjct: 860 AKALNFAQEWIQ 871


>gi|309973694|gb|ADO96895.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 874

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 546/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSLEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + +V G K   N   +  VI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEVVGTKDLSNK--SLHVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + K+ +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALTQV-KNSVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKVLRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AG+RRIEA+TG+ A   L  Q   L   A  LK     +  +++++ E+ +K+
Sbjct: 682 ITENAVAAGVRRIEAVTGENAIEWLHNQQRILTQSADLLKSDVNTLAEKIQQLQEKAKKV 741

Query: 771 QLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGII 825
           +      K K  +            +N +S I  ++DS   K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDSIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  +KK ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QA+     +L K
Sbjct: 860 AQAVKVAQDWLNK 872


>gi|205830049|sp|Q39HB7|SYA_BURS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 538/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKIVALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS +G+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRSGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-ESGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|217979627|ref|YP_002363774.1| alanyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505003|gb|ACK52412.1| alanyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 895

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/913 (51%), Positives = 611/913 (66%), Gaps = 40/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR  FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNGVNEIRAGFLDYFKKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+T+EF L
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EAF LWKKI+G    KIIRI ++DNFW+M +TGPCGPCSEIF+DQG
Sbjct: 121 PKDRLLVTVYHTDDEAFDLWKKIAGFPDSKIIRIASSDNFWAMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQFEQ    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 ERLKGGPPGSPDEDGDRFLEFWNLVFMQFEQLGPGERIDLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYDIDL + LI A    TG+  +G    +HRVI DHLR+ +FLIADG+ P+NEGRGY
Sbjct: 241 VTSNYDIDLMRALIVAIAAATGVDPDGPQKASHRVIADHLRACAFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LL   EPLM  L+P L  EMG AYPELI+A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLSAREPLMWRLVPVLSREMGQAYPELIRAESLIVETLRLEEARFI 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +LD  +  L +   L G VAFKLYDT+G PLD+ QD L AR LA +D+  FN
Sbjct: 361 DTLARGLSILDEAVRDLPEGAPLPGQVAFKLYDTYGFPLDLTQDALRARSLA-VDVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF++K++ GAT F+GY+                  
Sbjct: 420 TAMERQRADARRAWAGSGEAATETLWFAIKDEAGATDFLGYEA----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G+ VE    G+   ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 463 ------EQAEGVVAALVKDGKPVERLNKGETGAIILNQTPFYAESGGQVGDTGVMSAAGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD +KK   +FVH  IVE G +   ++L L++D+  R  +  NHSATHLLH +L  
Sbjct: 517 RFRVTDTKKKLGDLFVHEGIVEEGEITPGLALELSVDHARRSAIRANHSATHLLHESLRL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  D LRFD TH KPI+  EL  +ED  N  +  N PVVTR+M  ++A
Sbjct: 577 VLGDHVAQKGSLVADDRLRFDFTHLKPISPEELTRVEDIANRAVTDNAPVVTRLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY----EDGGV------HSSALCGGTHVSSTGEIMLLY 709
           IASGA AL G KY D VRVV++ Y    ED G        S  LCGGTHV+ TG+I L+ 
Sbjct: 637 IASGARALFGEKYGDEVRVVTMGYAQDREDSGDGGANRAFSVELCGGTHVARTGDIGLIA 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SES++ AG+RRIEA T   AR HL  + +KL+ +A  LK S+ +   R+  + EE RK
Sbjct: 697 ITSESAVAAGVRRIEAKTAAAARRHLNARSDKLEHIAVLLKSSEDDAEKRLAALLEERRK 756

Query: 770 L--QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +L  A++KL +           +I  V F    +S VD K+LKS+ D  ++ + SG+
Sbjct: 757 LDRELADARKKLAMGGGEKAAAEAQEIGGVKFFGRAVSGVDLKDLKSLADEAKQTVGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + + G+  + KA V++ VT DL++RF++V L RL+A  LGG GGGGR  MAQ+GGPNG  
Sbjct: 817 VAIAGVDSDGKAGVVVGVTADLVERFDSVALVRLAATELGGKGGGGRRDMAQAGGPNGAG 876

Query: 885 ADQAIAGVASFLK 897
            D A+A +A+ L+
Sbjct: 877 VDAALAAIANGLR 889


>gi|152977739|ref|YP_001343368.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|205829971|sp|A6VKD6|SYA_ACTSZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150839462|gb|ABR73433.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 874

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/912 (41%), Positives = 547/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  K  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKYDAINFAWEFLTSPKWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 ALPKEKLYVTVYETDDEAYDIWNKEVGVPQEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GGLPG   E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  VLQ   +NY+ID+F+ LI+   ++ G    GN   + RVI DH+RS ++LIADG+
Sbjct: 241 ERMTAVLQHVNSNYEIDIFQTLIKKVAEIVGTTDLGNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLIEVMAEAGKQVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL+LLD  L+++ K+ +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLILLDAELANV-KNGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A +D   F++ +E QR RA++ S           + S+    G T+F GY  +       
Sbjct: 418 A-VDENGFDKEMEAQRLRAQSAS------NFGMDYTSIIRVDGETKFEGYTNVESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ VE   +GQ   V+ + TPFYAE GGQ+GD
Sbjct: 467 -------------------AKVTALFRDGKAVESVSAGQSAVVILENTPFYAEMGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +G+   + D QK  + +F H   + +G L     +   +D Q R+   +NHSAT
Sbjct: 508 SGMLTANGLHFDVKDTQKYGQ-VFGHIGELTQGTLSVGQIVNAQVDAQRRQYTKLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++  GLRFD    + +T  ++  IE  VN  I  N PV+
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDVGLRFDFVQPEAVTKEQIMEIERLVNFHIRANHPVL 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T  M   +A + GA AL G KY + VRVV++        S  LCGG HV  TGEI LL I
Sbjct: 627 TEEMGVAEAKSKGAIALFGEKYGETVRVVTM-----SPFSIELCGGLHVERTGEIGLLKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE ++ AGIRR+EA+TG+ A + L  Q   L   A  LK    ++  ++ ++ ++ +K 
Sbjct: 682 ISEGAVAAGIRRVEAVTGEEAINWLFNQQTILAQSADLLKSDIPSLPEKIIQLQDKVKKT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +  ++       S  KI  V+ ++H +   D+K L+ ++D L+ ++ S +I
Sbjct: 742 EKELQQLKEKAAMQAGSDLAKSAVKINGVSVVTHQLDGADAKVLRVMVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L G +   K +++  VT DL  +  A +L  + A+ + GG GGGRP MA +GG      
Sbjct: 802 AL-GSASGGKVNLIAGVTADLTAKVKAGELVNVMAQQV-GGKGGGRPDMAMAGGSQPENL 859

Query: 886 DQAIAGVASFLK 897
             A+   + +LK
Sbjct: 860 SAALIVASDWLK 871


>gi|260579906|ref|ZP_05847736.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|260093190|gb|EEW77123.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 874

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 549/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 TQAIKVAQDWLNK 872


>gi|319897692|ref|YP_004135889.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317433198|emb|CBY81572.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 874

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 549/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+F N+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFANAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK  I  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTFIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA++ S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQSASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R  +S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIEILVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L      LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSTDLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|308187884|ref|YP_003932015.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308058394|gb|ADO10566.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 875

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/910 (44%), Positives = 559/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GHE++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFS 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYNIWADEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF+ LIQA  QVTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYEIDLFQKLIQAVAQVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLVEVMGAAGEELQRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+++F +TL+RGL LLD  L  L + + L+G++ F+LYDT G P D+  D+   R L 
Sbjct: 361 KSEEDQFARTLERGLALLDEELEKL-QGDTLDGEIVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+E+QR RAR  S G G+  +  I         A+ F GYD L        
Sbjct: 420 -IDEAGFEQAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYDQLD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ VKA+   GE V+E  +GQ   VV D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LAATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GLLKGKNAEFSVQDTQKYGQAI-GHVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPHEIRQVEDIVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A + GA AL G KY+ RVRV+++     G  S  LCGGTH + TG+I L  I 
Sbjct: 629 EVMDLEAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG+ A + +  Q  +L+ LA  +K +  N+  +V  + +  R L+
Sbjct: 684 AESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDYVRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++      +   +  V  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLRDQQAAQESASLSSNAIDVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELIAGLAQQV-GGKGGGRPDMAQAGGTDADALK 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 GALAGVESWV 871


>gi|189426203|ref|YP_001953380.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189422462|gb|ACD96860.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 876

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 542/906 (59%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH ++ SS LIP NDPTLMFTN+GM  FK+ F G E   Y   
Sbjct: 1   MTGNEIRARFLKYFEDRGHVVVSSSGLIPQNDPTLMFTNAGMNQFKDCFLGMEDRGYYRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  ASSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY+TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 TSRLYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P  +   + +RY+EIWN VFMQF +        LPK ++DTGMGLER+ TV+Q 
Sbjct: 181 EVGCGSPDCAVGCDCDRYMEIWNNVFMQFNRTADGVLHPLPKPAVDTGMGLERITTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DL + +I+  E+ +G KY  N  + V+ RVI DH R+ +FLI DG LP+NEGR
Sbjct: 241 VRSNYDTDLLQGIIRHIERHSGKKYGDNEKDSVSMRVIADHCRAVTFLICDGALPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EPL+  ++ A+   MG AYPEL + +  I + + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGVAEPLLCRMVDAVREMMGDAYPELAERETYIRKVVLAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L      ++ G+  FKLYDT G P+D+ +DI+ A G + +D 
Sbjct: 361 FNETLDRGLAILNEEVASLRAGGCSVIPGETLFKLYDTFGFPVDLTEDIVRAEGFS-VDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR   R H  G G+     ++  L      T F+GY  L            
Sbjct: 420 PGFEACMEHQRELGREHWKGSGAAGIADVYKELHNHGLRTNFVGYGSL------------ 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V A+++ G+ V+ A +G K++++ D +PFY E+GGQ GDTGC  
Sbjct: 468 -----------TAFSPVTALLRDGKKVQSATAGDKIDLICDTSPFYGESGGQAGDTGCIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               RL++    +    + VHHA+V+ G ++T  ++ LT+    RR  + NHSATHLL  
Sbjct: 517 SGSARLEVLATSRPFTDLVVHHALVKEGAIKTGDAVNLTVAIDKRRATARNHSATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H+ Q GS + P+ LRFD TH   +T  EL+ +ED VN  I  N  +  R M 
Sbjct: 577 ALRQVLGEHIKQAGSLVEPNRLRFDFTHFTGVTPEELQQVEDLVNGWIMDNAELNIREMG 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+ SGA AL   KY   VRVV +     G  S+ LCGGTHV + G+I L  I+SE  
Sbjct: 637 MQEAVESGATALFDEKYGSTVRVVRI-----GEVSAELCGGTHVRAAGDIGLFKILSEGG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIE  TG  A S +   + + +++A  LK     +V RVE++ E  R+LQ    
Sbjct: 692 IAAGVRRIEGATGFNALSFVRRLEGERQTVAELLKADSSKLVDRVEKLVERQRELQREVE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            +   V  ++  +  VD K L+ + D L+ K+ SG+++L G 
Sbjct: 752 SLQGKLNTAQSGDLLSQVQEAGGVKLLAVQVQVVDIKALRDMADQLRDKLGSGVVVL-GA 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + KA++L+ VT+DL  RF A +L    A ++ GG GGG+P +AQ+GG    K  +A+A
Sbjct: 811 ELDGKANLLVTVTKDLTGRFKAGELVGTLAPII-GGRGGGKPELAQAGGSQPEKLPEALA 869

Query: 891 GVASFL 896
            V++ +
Sbjct: 870 AVSALM 875


>gi|115351339|ref|YP_773178.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323447|sp|Q0BG79|SYA_BURCM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115281327|gb|ABI86844.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD]
          Length = 874

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 537/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|332173020|gb|AEE22274.1| alanyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 865

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/903 (43%), Positives = 565/903 (62%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL FF   GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y   
Sbjct: 3   KSTAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW  LT+E  L 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIAYAWTFLTQELKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +T+Y ED+EAF +W    G+  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 123 KEKLLVTIYSEDDEAFDIWHNEIGVPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 182

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PG   E+G+R+IEIWNLVFMQF +Q   +   LPK SIDTGMGLER++ +LQ  
Sbjct: 183 HIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAILQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F++LI+A+ ++ G     +   + RV+ DH+RS SFLI+DG++P+NEGRGYV
Sbjct: 243 HSNYEIDIFQNLIKATAEIVGTSSLEDK--SLRVVADHIRSCSFLISDGVMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL TEMG AYPEL + + +IE+ LR E+E+F +
Sbjct: 301 LRRIIRRAVRHGNKLGAKGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSR 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG+++L+  LS L + +++ G++ FKLYDT+G P D+  D+   +GL+ ID   F Q
Sbjct: 361 TLERGMLILNDALSEL-EGKVVPGELVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQ 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ EQR RA+  S        +  +         + F+GY+L +                
Sbjct: 419 AMAEQRKRAQKAS------NFDLDYNEQLRSDLESVFVGYELEQN--------------- 457

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   ++ +K I  QG+ V E  +G +  ++ D++PFYAEAGGQ GDTG  + D   
Sbjct: 458 --------TAQIKEIFVQGQSVAEIAAGMEGTIILDESPFYAEAGGQAGDTGTLVKDSGG 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D  K  + I   H       L+   S+   ++   R  + +NHSATHL+H AL ++
Sbjct: 510 FEVQDTVKLGKAI--AHKGAALSELKVGDSVQANVNGARRHAIKLNHSATHLMHAALKSV 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P+ LRFD +H + +T  ++ ++E  VN+ I  N  + T++M  E A 
Sbjct: 568 LGEHVNQKGSLVQPERLRFDFSHYEAMTKEQVLAVETMVNEQILANHALQTKLMGLEQAK 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+D VRVVS+     G  S  LCGGTHV+ TG+I L  I+SES I +G+
Sbjct: 628 EAGAMALFGEKYDDDVRVVSM-----GDFSMELCGGTHVARTGDIGLFKIISESGIASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A  ++  Q  +L S+++ LK     V  RV ++ E+ + L+    K K +
Sbjct: 683 RRIEAVTGITALQYVQQQAFELTSISAVLKTDVTTVGERVLQLIEQTKTLEKEVTKLKQE 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +            ++I  V  +S+ +  ++S  L++++D L+ +I SG+I+L G++  +K
Sbjct: 743 IANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GVATGEK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG      D AIA V  +
Sbjct: 802 VSLIAGVTKDLTQKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDSAIASVNEW 860

Query: 896 LKK 898
           L++
Sbjct: 861 LQE 863


>gi|205830050|sp|Q1BX19|SYA_BURCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++A V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|170701933|ref|ZP_02892858.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133166|gb|EDT01569.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 874

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 536/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGGAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R +   NHSATH
Sbjct: 509 GLLANASTRFAVADTLKVQADVVGHHGTLEQGTLKIGDVMRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       +I  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 GALAGVKGWVEE 872


>gi|283835574|ref|ZP_06355315.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291068784|gb|EFE06893.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 875

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/910 (44%), Positives = 571/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI++  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRSLIESVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVEVMGSAGDELKRQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GY+ L        
Sbjct: 420 -VDEEGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYEHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFAFAVSDTQKYGQAI-GHIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +  AE++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKVLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIHTVHAQSDRLNDIAQLLKGDSQNIGDKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|28869047|ref|NP_791666.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|37999391|sp|Q885J0|SYA_PSESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28852287|gb|AAO55361.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 874

 Score =  989 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/913 (43%), Positives = 544/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLTASANAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L
Sbjct: 358 LRGEEEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEEGFEREMEAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ V    +G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKDGQSVTHLNAGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G  +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSAT
Sbjct: 507 SGFLLAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVV
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVV 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|301155669|emb|CBW15137.1| alanyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 874

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/911 (42%), Positives = 552/911 (60%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRQADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI  + +V G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 418 A-IDEAGFEREMEAQRLRAQSASQ------FGMDYNNVIRVEGETKFEGYTESESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ V+   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKSVDSITAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     GI+  + D QK  + +F H   +E+G L+   ++   +D   R Q S+NHSAT
Sbjct: 508 SGYLTSQGIQFNVKDTQKYGQ-VFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  + +N  V 
Sbjct: 567 HLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A A GA AL G KY+D VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDVMDIEAAKAKGAMALFGEKYSDVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AG+RRIEA+TG+ A + L  Q   L   A   K     +V +++++ ++ +K 
Sbjct: 682 VAETAVAAGVRRIEAVTGENAINWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKKA 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ + H +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   I  + K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASI-LDDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFL 896
           + A+    ++L
Sbjct: 860 NLALTVAQNWL 870


>gi|73540553|ref|YP_295073.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|83305858|sp|Q474F4|SYA_RALEJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72117966|gb|AAZ60229.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134]
          Length = 874

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 537/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+  ++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSRYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFFDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  +MG AYPEL  A+  + E L++
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+   L   + L+G++AFKL+DT G PLD+ QD+   + +A
Sbjct: 359 EEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQEIA 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ L   +    
Sbjct: 419 -VDEAAFDAAMNRQREQARAAGKFKMAAG-------LEYSGDKTVFHGYEKLELPQ---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+   G  V+    GQ   +V D TPFYAE+GGQ GD 
Sbjct: 467 ------------------AKIIALYVDGAAVDAMQPGQTGVIVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D  K    +F H   +E G L+   ++   +D   R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +ED VN  I +N     
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  +L   D KL   A+ LK     +V R+ ++ E+ R L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAALKAQPSELVPRIGQVQEQVRALE 742

Query: 772 LIHA--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D    +  DV  +  +   +   D K L+  MD L+ K+QS  I+
Sbjct: 743 KELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860

Query: 887 QAIAGVASFL 896
           QA++GV  ++
Sbjct: 861 QALSGVVEWV 870


>gi|59798539|sp|Q6LMU3|SYA_PHOPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 873

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 534/910 (58%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q RL +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 123 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG +      L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ FG+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 361 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A+E QR RAR      G    E I   +      T+F GY             
Sbjct: 419 DEEGFNNAMEAQRQRAREAGK-FGVDYNESIKVDV-----NTEFCGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G 
Sbjct: 460 ----------TGTAAQSSIVALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     ++D QK       H   + +G L     L   +D   R  +++NHSATHLL
Sbjct: 510 LTAENTVFNVSDTQK-FGAAIGHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD ++ + +   +L+ IE  VN+ I  N  + T I
Sbjct: 569 HSALRNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE
Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L  ++         +I  V  +   +   D+K L+ ++D ++ K+ SGI++L 
Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861

Query: 889 IAGVASFLKK 898
           +  V  +L +
Sbjct: 862 LESVTPWLTE 871


>gi|56414779|ref|YP_151854.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197363707|ref|YP_002143344.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|59798481|sp|Q5PF17|SYA_SALPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56129036|gb|AAV78542.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197095184|emb|CAR60735.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 876

 Score =  989 bits (2557), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+E +++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDETYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEVGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLVSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|268593120|ref|ZP_06127341.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311391|gb|EFE51844.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 875

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/911 (42%), Positives = 559/911 (61%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGIPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+ID+F+ LI A+ + TG     N   + RVI DH+RS +FL++DG++
Sbjct: 243 RISAVLQHVNSNYEIDIFRDLIAAAAKATGATDLENK--SLRVIADHIRSCAFLVSDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIKVMGPAADELARQQAMVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELASL-KGDTLDGEAAFRLYDTYGFPIDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR  S G G+      + SL +    ++F GY           
Sbjct: 420 -VDEEGFERAMEDQRRRARESS-GFGAD-----YNSLIKVDKRSEFSGYQ---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +   + + A+ + G+ V+   +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 463 -------------YDEQQATITALYKDGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++TD QK  + I  H   VE G L     +   +D   R  + +NHSATH
Sbjct: 510 GYLNNDNASFKVTDTQKYGQAI-GHIGKVEAGSLVVNHRITAVVDSARRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I +N  + T
Sbjct: 569 LLHAALRQVLGDHVSQKGSLVNDKYLRFDFSHFEAMTQEQLRQVEDIVNAQIRKNSEIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH   TG+I L  I+
Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG  A   +  Q E+L ++A  +K    ++V +V+   ++ R+L+
Sbjct: 684 SESGTAAGVRRIEATTGSMAIESIHNQSEQLSAIAHLVKGDINSLVEKVKAALDKSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  +  +   +++ D K L++++D L+ +++S II+
Sbjct: 744 KEIVQLKDQQASQESASLSSKAKDVKGIKLLVTQLADTDPKLLRTMVDDLKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S+++ VT DL  +  A DL    A  + GG GGGRP MAQ+GG + +   
Sbjct: 804 LSTTSGD-KVSMIVGVTNDLTAKVKAGDLISYIASQV-GGKGGGRPDMAQAGGTDVSALP 861

Query: 887 QAIAGVASFLK 897
            A+A V  +++
Sbjct: 862 AAMASVEEWVE 872


>gi|77359489|ref|YP_339064.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|123589570|sp|Q3ILF3|SYA_PSEHT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76874400|emb|CAI85621.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 868

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/903 (44%), Positives = 545/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWQFLTEEVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +T+Y +DEEAF  W    GL AD+IIRI T DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 KEKLLVTIYHDDEEAFNYWSNDIGLPADRIIRIATADNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS  E+G+R+IEIWNLVFMQ+ +QN      LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HIWGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERIAAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLFK LI A+  VT    +  +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFKGLIAAAASVTNA--QDMDDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAQGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L K +++ GD+ FKLYDT+G P D+  D+   R +  ID   F +
Sbjct: 362 TLERGLAILEESLSDL-KGDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDNKGFEE 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T + GY     S              
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNDQLKSDKQTTYKGYTTTSHS-------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  +    E V     GQK  V+ D+TPFYAE+GGQ+GDTG     G  
Sbjct: 460 ---------ATVVEVFAGSESVSLLEDGQKGIVILDRTPFYAESGGQVGDTGVISVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K     F HH IV +G +     +  TID   R ++  NH+ATH+LH  L  +
Sbjct: 511 FTVTNTTKLGNA-FAHHGIV-QGRIGLNDKVEATIDDARRERIKKNHTATHILHETLRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  + LRFD +H + +T  EL+ IE  VND I  N  + T +M  +DA 
Sbjct: 569 LGEHVGQKGSLVQAERLRFDFSHFEAVTKEELREIERVVNDEIRCNFALSTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--K 778
           RRIEA+TG  A +++  Q++KL  +A+ +K    +V+ +V  + ++ ++L+   A+   K
Sbjct: 684 RRIEAVTGADAIAYVSEQEQKLNDVAAVVKADSASVLEKVTALLDKSKQLEKQIAQLNDK 743

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L           + ++N +  +I+ V   +SK L+ ++D L+ KI SG+I L G++ + K
Sbjct: 744 LASAAGASLLDSVVEINGIKLLIANVKGTESKALRGMVDDLKNKIGSGVIAL-GVASDDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  R  A +L    A  + GG GGGRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGRVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPENLTAALDSVTAW 861

Query: 896 LKK 898
             +
Sbjct: 862 FTE 864


>gi|16272755|ref|NP_438974.1| alanyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|1174496|sp|P43815|SYA_HAEIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1573826|gb|AAC22473.1| alanyl-tRNA synthetase (alaS) [Haemophilus influenzae Rd KW20]
          Length = 874

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVR GGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +  +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 TQAIKVAQDWLNK 872


>gi|260581631|ref|ZP_05849428.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260095224|gb|EEW79115.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 874

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 552/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P +   M  A  ++   ++ +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTIIDVMAEAGKDVKAKQVNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD++L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLNLLDEALAQV-KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D + R   S+NHSAT
Sbjct: 508 SGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+T Q A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTAQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|2500957|sp|P70865|SYA_BARBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1568622|gb|AAB09037.1| AlaS [Bartonella bacilliformis]
          Length = 886

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/909 (51%), Positives = 634/909 (69%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVDFKNVFTGLEKHSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+ A  LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQ+EQ +K++R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++ G+K  G+   +HRVI DHLRSS+FLIADGI+P+NEGRGY
Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  + LM  L+P L +EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   +HL + +  NG+VAFKLYDT+G PLD+ QD L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE +WFS++++ GAT+F+GY+                  
Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A+++ GE+V+    GQK  +V +QTPFY E+GGQ+GD+G   G   
Sbjct: 463 ------EKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK + +F+H   ++ G  +    + L +D   RR++  NHSATHLLH +L  
Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LGSHV Q GS ++PD LRFD +H K I+S ELK IED  NDI+ QN  V TR+M  +DA
Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY--EDGG---VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRV+S+    E  G     S  LCGGTHV  TG+I L++I+SE+
Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+T   AR +L GQD ++  +A  LK S  +V  RV+ + +E RKL+   
Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756

Query: 775 --AKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +++K+ LN   ++       I  ++FM  ++S +  K+LK+++D+ +KKI SG++  +
Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S++ K S ++ VT+DL D  NAVDL R+ +  LGG GGGGR  MAQ+GG  G KAD+A
Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876

Query: 889 IAGVASFLK 897
           +  +   LK
Sbjct: 877 LVALKDSLK 885


>gi|331017460|gb|EGH97516.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 874

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/913 (43%), Positives = 543/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLTASANAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L
Sbjct: 358 LRGEEEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEEGFEREMEAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G  +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSAT
Sbjct: 507 SGFLLAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVV
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVV 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|62181330|ref|YP_217747.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75481392|sp|Q57KU6|SYA_SALCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|62128963|gb|AAX66666.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715813|gb|EFZ07384.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 876

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|302132483|ref|ZP_07258473.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 874

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/913 (43%), Positives = 543/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLTASANAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L
Sbjct: 358 LRGEEEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEEGFEREMEAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G  +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSAT
Sbjct: 507 SGFLLAGDTRFDVSDTTK-TGGAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVV
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVV 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|145630561|ref|ZP_01786341.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144983951|gb|EDJ91393.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 874

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 550/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+FK LI  + ++ G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGTTDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  LS + KD IL+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  +F++ +E QR+RA+A S           + S+    G T+F GY  +       
Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQ------FGVDYNSVIRVDGETKFEGYTEVES----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G+ VE   +GQ   V+ + TPFYA++GGQ+GD
Sbjct: 466 ------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAKSGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+   + D QK  + +F H   + +G L+   S+   +D +     S+NHSAT
Sbjct: 508 SGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRLHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS ++   LRFD    + IT  +L  IE  VN  I  N PV 
Sbjct: 567 HLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ + A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E+++ AGIRRIEA+TGQ A   L  Q   L   A  LK     +V +++++ ++ +K+
Sbjct: 682 ITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKKV 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI  V+ ++  +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFLKK 898
            QAI     +L K
Sbjct: 860 AQAIKVAQDWLNK 872


>gi|167550339|ref|ZP_02344096.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324713|gb|EDZ12552.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 876

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKLSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|198245112|ref|YP_002216798.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205353771|ref|YP_002227572.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858091|ref|YP_002244742.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|197939628|gb|ACH76961.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205273552|emb|CAR38539.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206709894|emb|CAR34247.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326624557|gb|EGE30902.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628879|gb|EGE35222.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 876

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 568/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q +     LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAEGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|161615724|ref|YP_001589688.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205830199|sp|A9N0C1|SYA_SALPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161365088|gb|ABX68856.1| hypothetical protein SPAB_03515 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 876

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFSVDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|171321470|ref|ZP_02910415.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171093253|gb|EDT38456.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 874

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/911 (41%), Positives = 536/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID   R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  +  RFD  H+ P+T  E++ +E  VN+ I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRFVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 803 LAAV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 GALAGVKGWVE 871


>gi|167645359|ref|YP_001683022.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
 gi|205830018|sp|B0SZN4|SYA_CAUSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167347789|gb|ABZ70524.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 883

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/906 (49%), Positives = 586/906 (64%), Gaps = 35/906 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F    H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLNYFGAADHAIVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPPHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT++F L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D EA  LWKKI+GLS D+IIRI TNDNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDTEAADLWKKIAGLSDDRIIRIATNDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A V+Q 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQMAGGERVSLPKPSIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI AS ++TG++ EG    +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIAASVELTGVRAEGAQAPSHRVIADHLRSSSFLLADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  +MG AYPEL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMHRLAPTLVAQMGQAYPELRRAEASIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   + L    +L+G+ AFKLYDT+G PLD+ QD + ARG+  +D   F+
Sbjct: 361 VTLGRGMGLLDEATAGLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRARGIT-VDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA+  G G       WF +KE+ G T F+GYD                  
Sbjct: 420 VAMDRQRTMARANWAGSGQTGAAAAWFGIKEQSGPTNFVGYDTTET-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +  VKAIV  G  VE A +G  V+V+ D+T FYAE+GGQ GDTG     G+
Sbjct: 466 ---------TGTVKAIVLDGAPVEAAQAGASVDVLLDRTSFYAESGGQAGDTGVIEAHGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QK+A  ++VH   +  G L+   S+V ++D   R     NHSA HL+H AL  
Sbjct: 517 ESRVTDTQKQAGDLYVHRVELA-GPLKVGDSVVASVDAARRTTTRANHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  D +RFD +H  P+T+ E++ IE  VN +I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGDRMRFDFSHGGPLTADEIERIEAEVNAVIRQNVPAQTKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     E G  +S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGESLTETGKAYSVELCGGTHVARTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG+ AR  L+ Q    K+LA   K     V+ RV+ +  E + L+   A+
Sbjct: 696 ASGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVLARVDALVAERKALERQLAE 755

Query: 777 RKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            K QL +   S         +A    ++ ++  V  KEL+ V +  +K++ +G ++ +  
Sbjct: 756 AKKQLALGGGSGGAASGPEDVAGTALIARVLDGVGGKELRGVAEEFKKQLTNGGVVALVG 815

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+  KA   + 
Sbjct: 816 VTDGKAAVTVAVTADLTAKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDATKAQAGLD 875

Query: 891 GVASFL 896
            + + L
Sbjct: 876 AIKAAL 881


>gi|146312813|ref|YP_001177887.1| alanyl-tRNA synthetase [Enterobacter sp. 638]
 gi|205830088|sp|A4WDQ6|SYA_ENT38 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145319689|gb|ABP61836.1| alanyl-tRNA synthetase [Enterobacter sp. 638]
          Length = 875

 Score =  988 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 565/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PG++ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGTAEEDGDRYIEIWNIVFMQFNRQIDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF  LI++  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFSTLIKSVAEVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVGVMGDAGEELKRQQSQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSQLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFQGYDRLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ V A+   G+ V+   +GQ   VV D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNAKVTALFVDGKAVDSISAGQDAVVVLDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    ++D QK  + I  H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFSFAVSDTQKYGQAI-GHIGKLASGSLKVGEGVQAEVDEARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRDVLGTHVAQKGSLVNDKILRFDFSHFEAMKPSEIRAVEDMVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  + ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAESDQLHDIAQLLKGDSHNLGEKVRSALERSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q  V++          I  V  +   ++ V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAVQESANLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATAV-DGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|109899322|ref|YP_662577.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|123360521|sp|Q15RG5|SYA_PSEA6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109701603|gb|ABG41523.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
          Length = 865

 Score =  988 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/903 (43%), Positives = 563/903 (62%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL FF   GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y   
Sbjct: 3   KSTAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI  AW  LT+   L 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHQAIGYAWSFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +TVY ED+EAF +W    G+  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 123 KDKLLVTVYSEDDEAFDIWHNDIGIPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 182

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS  E+G+R+IEIWNLVFMQF +Q   +   LPK SIDTGMGLER++ ++Q  
Sbjct: 183 HIWGGPPGSPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAIIQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F++LI+A+ ++ G+    +   + RV+ DH+RS SFLI+DG++P+NEGRGYV
Sbjct: 243 HSNYEIDIFQNLIKATAKIVGVTSLEDK--SLRVVADHIRSCSFLISDGVMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL TEMG AYPEL + + +IE+ LR E+E+F +
Sbjct: 301 LRRIIRRAVRHGNKLGANGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSR 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RG+++L+  L+ L + +++ GDV FKLYDT+G P D+  D+   +GL+ ID   F Q
Sbjct: 361 TLERGMLILNDALNEL-EGKVVPGDVVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQ 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ EQR RA+  S        +  +         + F+GY+                   
Sbjct: 419 AMAEQRKRAQKAS------NFDVDYNEQLRSDLESIFVGYE------------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   ++ +  +  +G+ V E  +G +  V+ D++PFYAEAGGQ GDTG  + D   
Sbjct: 454 ----HEDNTATITELFFKGQSVNELAAGAEGTVILDESPFYAEAGGQAGDTGTLVTDAGG 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + D  K  + I    A + +  L    S++  ++   R  + +NHSATHL+H AL +I
Sbjct: 510 FSVKDTVKLGKAIAHKGAALSK--LSVGDSVLAKVNGVRRHAIKLNHSATHLMHAALKSI 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D LRFD +H + ++  ++ ++E  VN+ I  N P+ T++M  E A 
Sbjct: 568 LGEHVNQKGSLVQADRLRFDFSHFEAMSKEQVLAVETMVNEQILANHPLQTQLMGLEQAK 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+D VRVVS+     G  S  LCGGTHV  TG+I L  I+SES I +G+
Sbjct: 628 EAGAMALFGEKYDDDVRVVSM-----GSFSMELCGGTHVERTGDIGLFKIISESGIASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A  H+  Q  +L S+++ LK    +   RV ++ E+ + L+   AK K +
Sbjct: 683 RRIEAVTGLTALQHVQQQTFELSSISAVLKTDVNSAGERVVQLIEQTKTLEKEVAKLKQE 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +            ++I  V  +S+ +  ++S  L++++D L+ +I SG+I+L G++   K
Sbjct: 743 IANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GLATGDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG      D AIA V+ +
Sbjct: 802 VSLIAGVTKDLTHKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDTAIASVSEW 860

Query: 896 LKK 898
           L++
Sbjct: 861 LQE 863


>gi|251793474|ref|YP_003008203.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247534870|gb|ACS98116.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 874

 Score =  988 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/912 (42%), Positives = 552/912 (60%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FKN+F G EK  Y  
Sbjct: 1   MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ DEEA+K+W    G+ A++IIRI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDEEAYKIWHDEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLNNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG TE     L+P L   M  A  ++ + +  +E+ 
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEDVKKHQATVEKF 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++ KD +L+G VAFKLYDT+G PLD+  D+   RG+
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANV-KDNVLSGKVAFKLYDTYGFPLDLTADVCRERGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A ID   F + +  QR RA++ S           + ++    G T+F GY          
Sbjct: 418 A-IDEAGFEREMASQRVRAQSASQ------FGMDYNNVIRVDGTTRFEGYTESESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   +GQ+  V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKAVESITAGQRAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G+G    + D QK  + +F H   + +G L    S+   +D   R+Q+S+NHSAT
Sbjct: 508 IGRLEGNGFIFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDDVRRQQISLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++   LRFD  H + I+  +L  +E  VN  +  N PV 
Sbjct: 567 HLLHAALRQVLGEHVAQKGSLVSDALLRFDFAHHEAISKEQLAEVERIVNQQVRANNPVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T  M  + A A GA AL G KY+++VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TEAMALDAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AGIRRIEAITG+ A   L  Q   L   A  LK    ++  ++  + ++++K+
Sbjct: 682 VTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSADLLKSDVNSITDKISLLQDKFKKV 741

Query: 771 QLIHA--KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K K  L   +       KI  V+ +   +  +++K L+S++D+L+ ++ S +I
Sbjct: 742 EKELQTLKEKAALQAGNDLAQSAVKIHGVSVIVQQLDGIEAKSLRSMVDSLKNQLGS-VI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++     ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 801 VVFASVLDEKVNLIVGVTGDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPQNI 859

Query: 886 DQAIAGVASFLK 897
            +A++  + +LK
Sbjct: 860 GKALSVCSDWLK 871


>gi|303253696|ref|ZP_07339833.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247624|ref|ZP_07529667.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302647421|gb|EFL77640.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306855894|gb|EFM88054.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 874

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 545/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|322514279|ref|ZP_08067338.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119833|gb|EFX91853.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 874

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSLQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+   GGLPG   E+G+RYIE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDTFWGGLPGTPEEDGDRYIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEILTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMSAQRERAKASS------NFGTDYSNVIKVDGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIHSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     ++D QK  + +F H   +  G L     +   ++   R+ ++ NHSAT
Sbjct: 508 NGLISTEICEFTVSDTQKYGQ-VFGHVGQLTSGSLAIGDKVTAHVEINRRQAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ D LRFD +  + IT A+L+ IE  VN  I +N+ VV
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSEDALRFDFSQPEAITKAQLEEIERIVNRNIRENIQVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 IETMDIESAKQKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQHTGEIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AG+RR+EA+TG++A   L  Q   ++  A  LK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGVRRVEAVTGEKAMDWLHNQQRVIQQSAELLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +   +          +I  VN +   +  V++K L++++D L+ + ++ I+
Sbjct: 742 EKELQQLKDKFAAQAGSELAKQASQINGVNVIVQKLEGVETKSLRTMVDDLKNQFENAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   + K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GSVADDKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQHL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DSALKFAQEWIQ 871


>gi|325579107|ref|ZP_08149063.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159342|gb|EGC71476.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 874

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/911 (42%), Positives = 550/911 (60%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LP+ S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI  + +V G     N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A  E+ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ + KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A ID   F + +E QR RA++ S           + ++    G T+F GY          
Sbjct: 418 A-IDEAGFEREMEAQRLRAQSASQ------FGMDYNNVIRVEGETKFEGYTESESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFHDGKSVESITAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     GI+  + D QK  + +F H   +E+G L+   ++   +D   R Q S+NHSAT
Sbjct: 508 SGYLTSQGIQFNVKDTQKYGQ-VFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  + +N  V 
Sbjct: 567 HLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVVQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A A GA AL G KY D VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TDVMDIEAAKAKGAMALFGEKYADVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+E+++ AG+RRIEA+TG+ A + L  Q   L   A   K     +V +++++ ++ +K 
Sbjct: 682 VAETAVAAGVRRIEAVTGENAMNWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKKA 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ + H +  +++K L+ ++D L+ ++ SG+I
Sbjct: 742 EKELQGLKEKAAMQAGSDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   I  + K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASI-LDDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENV 859

Query: 886 DQAIAGVASFL 896
           + A+    ++L
Sbjct: 860 NLALTVAQNWL 870


>gi|307254463|ref|ZP_07536300.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258922|ref|ZP_07540653.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306862604|gb|EFM94561.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306866946|gb|EFM98803.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 874

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTGICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|213968623|ref|ZP_03396765.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301385518|ref|ZP_07233936.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|213926556|gb|EEB60109.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
          Length = 874

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  +PSSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLTASANAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP++EGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L
Sbjct: 358 LRGEEEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEEGFEREMEAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G  +    R  ++D  K   G  +HH +V  G L   + +   +  + R    +NHSAT
Sbjct: 507 SGFLLAGDTRFDVSDTTK-TGGASLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVV
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVV 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|224584605|ref|YP_002638403.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469132|gb|ACN46962.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 876

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 566/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    +   QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDATQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|237729651|ref|ZP_04560132.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226908257|gb|EEH94175.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 875

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/910 (44%), Positives = 572/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI++  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRSLIESVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + ++++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVDVMGSAGEELKRQQVMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYEHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFAFAVSDTQKYGQAI-GHIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H++ +  AE++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKLLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   +  + ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIQTVHAESDRLSDVAQLLKGDSQNIGDKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  D+N +  ++SE   V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|86750846|ref|YP_487342.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|123292252|sp|Q2ITM9|SYA_RHOP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86573874|gb|ABD08431.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
          Length = 891

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/901 (51%), Positives = 608/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNDIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF DQG
Sbjct: 121 KKDKLLVTVYHTDDEAASYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ+EQ  K ER  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 EHIFGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKDERLPLPRPSIDTGMGLERMANILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFETDLFRSLIDATSSALGRGPGEEDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +GD AF LYDT+G PLD+ QD L  RG++ +DI SF 
Sbjct: 361 KTLDRGLAILDEKSASLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WF L+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLREKLGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V  G+ V+   +G    +V +QTPFYAE+GGQ+GDTG   GDG+
Sbjct: 463 ------ETAEGVVTALVADGKEVDALKAGDSGAIVLNQTPFYAESGGQVGDTGVLSGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD  KKA  +FVH   VE G ++ + +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGAIKRDAALQLDVDHARRSSIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITPDELRRVEDIANDIVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKTARDSGSNALGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR          K  A+ L+ +  ++  R+  + EE +KL+  
Sbjct: 697 SAVASGVRRIEALTGRYARQSANAAINTAKQAAAELRTTVDDMPARIAALMEERKKLERE 756

Query: 774 H--AKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
              A++KL +                ++  V  M+  +  ++ K+LKS++D  +K++ SG
Sbjct: 757 LSDARKKLAMGGGGAAGAADGGADVREVGGVKLMARAVEGIEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I LV  S++ K S+++ VT DL+ RF+AVDL R ++ VLGG GGGG+P MAQ+GGP+G+
Sbjct: 817 VIALVATSEDGKGSIVVGVTPDLVARFSAVDLVRTASVVLGGKGGGGKPDMAQAGGPDGS 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|330432525|gb|AEC17584.1| alanyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 874

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/902 (42%), Positives = 548/902 (60%), Gaps = 56/902 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSYLDFFHSKGHQIVASSSLVPENDPTLLFTNAGMNQFKDVFLGIDKRSYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHFAWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ DEEA+ +W +  G+ AD+I+RI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDEEAYNIWHQQIGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQ+ +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQYNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDID+FK LI    ++TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYDIDIFKVLIAKVAEITGEKDLANK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M  A   L + ++ IE+ 
Sbjct: 299 YPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPTLIEVMAQAGEILKEKQVHIEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ L K  +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDAELASL-KGNVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A ID   FN+ +E QR RA+A S           + +L    G T F GY          
Sbjct: 418 A-IDEDGFNREMEAQRERAQAASQ------FGMDYNNLIRVDGTTAFEGYHAAESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V AI   G+ V +  +GQ   ++ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVSAIFVDGKEVNQVQAGQSAVIILENTPFYAESGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK  + +F H   +++G ++   +L   +D + R+  S+NHSAT
Sbjct: 508 SGILESADALFTVNDTQKYGQ-VFGHIGELKKGEIKVGQTLHAVVDAERRQATSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV+Q GS ++   LRFD +  + I+ A++  IE  VN  I  N  V 
Sbjct: 567 HLLHAALRQVLGTHVAQKGSLVSDKLLRFDFSQPEAISKAQIAEIERIVNSQIRANHVVS 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY DRVRV+++     G  S  LCGG HV  TG+I L  I
Sbjct: 627 VEEMDIEAAKAKGAMALFGEKYGDRVRVITM-----GDFSIELCGGIHVKRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES+I AG RRIEA+TG+ A + ++ Q   L   A  LK    ++V +++++ +  +KL
Sbjct: 682 VSESAIAAGTRRIEAVTGEEAFNVVLAQQSLLTQSAELLKSDLPSIVEKIQQLQDRAKKL 741

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +  V+ +         I  V  +   ++ VD K L+ ++D L+ ++ + +I
Sbjct: 742 EKELQQLKEKSAVQAVSDLAQKAQTINGVKVVIESVTGVDPKSLRIMVDDLKNQLGTAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G ++++K ++++ VT+DL  +  A +L    A+++ GG GGGRP MA +GG    K 
Sbjct: 802 VF-GATQDEKVNLIVGVTQDLTGKVKAGELVNQLAQLV-GGKGGGRPDMAMAGGNEPAKL 859

Query: 886 DQ 887
           ++
Sbjct: 860 NE 861


>gi|190149963|ref|YP_001968488.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307263291|ref|ZP_07544909.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|205829969|sp|B3H177|SYA_ACTP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189915094|gb|ACE61346.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871353|gb|EFN03079.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 874

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 545/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGADYNNVIKVEGQTDFIGYDNLA------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|303249632|ref|ZP_07335837.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307252204|ref|ZP_07534102.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651444|gb|EFL81595.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860348|gb|EFM92363.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 874

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 545/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGADYNNVIKVEGQTDFIGYDNLA------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|330428621|gb|AEC19955.1| alanyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 873

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/911 (42%), Positives = 536/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH+++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y   
Sbjct: 1   MKTSEIRQKFLSFFESKGHQVVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQNAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYQEDDEAYDIWAKEIGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D       G      E+G+RYIEIWNLVFMQFE+       +LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPLLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P+
Sbjct: 241 AAVLQHVHSNYEIDLFQSLIKAAARETGISDLANN--SLKVIADHIRACSFLIVDGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG +      L+  L  EMG AYPEL+  +  IE+ L+ 
Sbjct: 299 NEGRGYVLRRIVRRALRHGHKLGQSGVFFHRLVKDLVAEMGQAYPELVAQQARIEQVLKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL+ G+ +LD  L+ + +  +L+G   F LYDT+G P+D+  DI   R +  +
Sbjct: 359 EEERFSETLENGMKILDAALAAVPEKGMLDGQTLFTLYDTYGFPVDLTADICREREV-QV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F  A+  QR +ARA      +         L      T+F GYD L+         
Sbjct: 418 DMDGFEVAMNHQREQARAAGKFKAAEG-------LSYSGVETRFDGYDQLQS-------- 462

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             V A+   G  VE   +GQ+  VV D TPFYAE+GGQ+GD G 
Sbjct: 463 ---------------QGTVTALYIDGTQVESVSAGQQAIVVLDATPFYAESGGQVGDAGI 507

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +G R  + D QK    +F HH  +  G+L    ++   +D   R +   NHSATHL+
Sbjct: 508 LQANGARFAVADTQKIQNSVFGHHGEMLEGVLAVGDTVDAQVDKARRARTVRNHSATHLM 567

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     ++
Sbjct: 568 HKALRQVLGSHVQQRGSLVDPDKTRFDFAHDAPMTADQIAQVERIVNAEVLNNHATQAQL 627

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRV+ +        S  LCGGTHV+ TG+I L  IVSE
Sbjct: 628 MSYDDAVQGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVARTGDIGLFKIVSE 681

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
             + AG+RR+EAITG  A + +   ++ L   A  LK    ++V RV  +  + + L+  
Sbjct: 682 GGVAAGVRRVEAITGDNAVAWVQQINDTLVQAAGLLKTQPADLVERVALMQTQAKALERD 741

Query: 772 LIHAKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           L   K KL  +  +    +      D   +   +S VD K L+ ++D L+ K++S +++L
Sbjct: 742 LDRLKSKLAASAGNDLASQAIVLRGDAKLLVASLSGVDPKALRGMIDQLKDKLKSAVVLL 801

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K S+   VT DL  +  A DL  + A  + GG GGGRP MA  GG +      
Sbjct: 802 AAVA-DDKISLAAGVTGDLASQVKAGDLVGMVAAQV-GGKGGGRPDMAMGGGTDVGALPA 859

Query: 888 AIAGVASFLKK 898
           A AGV +++++
Sbjct: 860 ATAGVEAWVRE 870


>gi|310766672|gb|ADP11622.1| Alanyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 876

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA  +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEALDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI++  Q+TG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQLTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L +L + + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELENL-QSDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S G G       + ++     A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRARDAS-GFGCD-----YNNVIHIDQASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   G+  +   +G++  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     +++ QK A+ I  H   +  G LR    +   +D   R ++ +NHSATH
Sbjct: 510 GELQGNSASFIVSNTQKYAQAI-GHSGKLATGELRVGDRVAAQVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  E++ +E+ VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+++L  ++  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 AALAGVELWV 871


>gi|307245509|ref|ZP_07527596.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306853568|gb|EFM85786.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
          Length = 874

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDKAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTGICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|307292727|ref|ZP_07572573.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306880793|gb|EFN12009.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 884

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/904 (48%), Positives = 597/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD D FK LI+ S  +T    +G +  +HRVI DHLRS+SFLIADG+LPANEGRGY
Sbjct: 241 VHNNYDTDTFKALIEESGALTKTATDGEHQASHRVIADHLRSTSFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+P+L +EMG AY EL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGSKEPLMHRLVPSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL G+D   F+
Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY   +G              
Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGYSSTQG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                       V AIV+ G   + A +G+ V +V +QTPFY E+GGQ+GD G      G
Sbjct: 466 ---------EGEVVAIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   + D  K    +  H A +  G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSIKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H + +T +++ +IE +VN+ +  N  V TR+M  +D
Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHSQIAAIEADVNEQVRHNEAVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I +  I+SES++ +
Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L  ++++L+  A+ LK +   V  R+  + E+ R+L+   A+ K
Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRRLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +            K+  VNF+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGGSAQAAGPEKVGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAVLAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           E +A++ + VT+DL+   +AVDL R   + LGG GGGGRP MAQ GGP G+KA+ AI  V
Sbjct: 816 EGRATIAVGVTDDLVGTISAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGDKAEAAIEAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KAAL 879


>gi|134295482|ref|YP_001119217.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|205830008|sp|A4JDM9|SYA_BURVG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134138639|gb|ABO54382.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4]
          Length = 874

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/911 (42%), Positives = 540/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT      NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTETADLNNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+       ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGSSVGEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVQRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ E+ + L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V  ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVFVLAATLDGADAKTLRETVDKLKYKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 GALAGVKGWIE 871


>gi|261346225|ref|ZP_05973869.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282565533|gb|EFB71068.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 875

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGVPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PG   E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGTPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDID+F+ LI A+ + TG     N   + RVI DH+RS +FLI+DG++
Sbjct: 243 RISAVLQHVNSNYDIDIFRELIAAAAEATGATDLSNK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+P L   MG+A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVPTLIKVMGTAADELQRQQAMVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L K + L G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDDELASL-KGDTLEGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR  S G G+      + +L +    ++F GY           
Sbjct: 420 -VDEEGFERAMEDQRRRARESS-GFGAD-----YNALIKVDKRSEFSGYQ---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +   + + A+ + G+ V+   +G++  V+ D+T FYAE+GGQ+GDT
Sbjct: 463 -------------HDEQQATITALYKDGQPVDALNAGEEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D QK  + I  H   VE G L     +   ++ + R  + +NHSATH
Sbjct: 510 GVLTNESGNFVVLDTQKYGQAI-GHVGKVESGSLVVNHRISARVNSERRNAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I QN  + T
Sbjct: 569 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEALTQQQLRQVEDIVNAQIRQNSEIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG  A  HL  Q E+L ++A  LK    ++V +V+   ++ R L+
Sbjct: 684 SESGTAAGVRRIEATTGATAIEHLHAQSEQLSAIAHLLKGDANSLVEKVKAALDKSRNLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  +  +   +++ D K L++++D L+ +++S II+
Sbjct: 744 KEILQLKDQQASQESASLGSKAKDVKGIKLLVSQLNDTDPKLLRTMVDDLKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S+++ VT DL  +  A DL    A+ + GG GGGRP MA +GG +     
Sbjct: 804 LSTTSGD-KVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGSDVKALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 TAMASVEQWV 871


>gi|146281753|ref|YP_001171906.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|145569958|gb|ABP79064.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 900

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/913 (44%), Positives = 552/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 27  MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 85

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 86  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWL 145

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 146 KLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 205

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 206 CTEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 265

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ A+    G   EG    + +V+ DH+RS  FLIADG+
Sbjct: 266 ERISAVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGV 323

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 324 TPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERV 383

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 384 LKNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNL 442

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S           + SL +  G T+FIGY    GS    
Sbjct: 443 T-LDEEGFEREMQAQRERARSAS------AFGMDYNSLVKVEGETRFIGYQGTSGS---- 491

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD
Sbjct: 492 -------------------GKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGD 532

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G     G+R  + D  K A G F+HH IV+ G L T   +  T+D   R+  ++NHSAT
Sbjct: 533 CGYLEAQGLRFDVRDTSK-AGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSAT 591

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V 
Sbjct: 592 HLLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVE 651

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I
Sbjct: 652 IEETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKI 707

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L
Sbjct: 708 TSEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQL 767

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           S  ++  +  ++     +D K L +++D L+ K+ S +I
Sbjct: 768 EKELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVI 827

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K  ++  VT+DL  R  A DL R +A  +GG GG GRP MAQ GG +  K 
Sbjct: 828 LLGGVQ-DDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKGG-GRPDMAQGGGTDAAKL 885

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F ++
Sbjct: 886 DEALALALPFAQQ 898


>gi|197249925|ref|YP_002147723.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213628|gb|ACH51025.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 876

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 566/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERKIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   + Q+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVEVINAEQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFTFAVDDTQKYGQAI-GHIGKLSAGALKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQGWV 871


>gi|145220|gb|AAA03208.1| alanyl-tRNA synthetase [Escherichia coli]
          Length = 876

 Score =  985 bits (2547), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/910 (44%), Positives = 562/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSS  P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSRYPITDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N        NFW M  TGPC PC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRINDNKGAPYASGNFWRMGGTGPCDPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HVS  GS +    LRFD +H++ +   E++++ED VN +I +NLP+ T
Sbjct: 569 LMHAALRQVLGTHVSHKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTLIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +    ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLE 743

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++ +    K  DVN +  ++SE   V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|212709394|ref|ZP_03317522.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM
           30120]
 gi|212688306|gb|EEB47834.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM
           30120]
          Length = 875

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 557/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EAF +W K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAFDIWNKEIGVPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+ID+F+ LI A+ + TG     N   + RVI DH+RS +FL++DG++
Sbjct: 243 RISAVLQHVNSNYEIDIFRELIAAAAEATGATDLSNK--SLRVIADHIRSCAFLVSDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL + + L+E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVSTLIKVMGPAAEELQRQQALVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L K + L G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELASL-KGDTLEGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR RAR  S G G+      + +L +    ++F GY           
Sbjct: 420 -VDEAGFERAMEDQRRRARESS-GFGAD-----YNALIKVDKRSEFSGYQ---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +   + + A+ + G+ V+   +G +  V+ D+T FYAE+GGQ+GDT
Sbjct: 463 -------------HDEQQATIIALYKDGQPVDSLHTGDEGLVILDKTAFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D  +  +TD QK  + I  H   VE G L     +   ++ + R  + +NHSATH
Sbjct: 510 GVLTNDSAQFTVTDTQKYGQAI-GHVGKVESGSLVVNHRIAAIVNSERRNAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  +L+ +ED VN  I QN  + T
Sbjct: 569 LLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTQQQLRQVEDIVNAQIRQNSEIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A A GA AL G KY +RVRV+S+     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 ELMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG  A  HL  Q E+L ++A  LK    ++V +V+   ++ R L+
Sbjct: 684 SESGTAAGVRRIEATTGAAAMEHLHAQSEQLSAIAHLLKGDVNSLVEKVKAALDKSRNLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  +  +   +S+ D K L++++D L+ +++S II+
Sbjct: 744 KEILQLKDQQASQESASLSSKAKDVKGIKLLVSQLSDTDPKLLRTMVDDLKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S+++ VT DL  +  A DL    A+ + GG GGGRP MA +GG + +   
Sbjct: 804 LSTTSGD-KVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGTDVSALP 861

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 862 TAMESVEQWV 871


>gi|254360816|ref|ZP_04976963.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261495705|ref|ZP_05992149.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153092290|gb|EDN73359.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|261308617|gb|EEY09876.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 875

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 546/911 (59%), Gaps = 55/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G    GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +K   N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   FN  +  QR RA+A S      +    + ++ +    T F GY     +    
Sbjct: 418 K-IDEDGFNAEMTAQRERAKASS------SFGTDYNNVIKVDSKTCFSGYTETSLND--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G+ VE   SG+   V+ D+TPFYAE GGQ+GD
Sbjct: 468 -------------------ATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK  + +F H   +  G L     +   +D + R  +++NHSAT
Sbjct: 509 SGQISAEICNFEVVDTQKYGQ-VFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD++  + IT ++L+ +E  VN  + +N+ V+
Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY + VRVV +        S  LCGGTHV  TG+I L  I
Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRVVEM-----SDFSIELCGGTHVKQTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RRIEA+TG+ A + L    + ++  A  LK    + V ++ ++ E+ ++ 
Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +          +I  VN +   +  V+ K L++++D L+ ++ S ++
Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + E K ++++ VT+DL D+ NA  L    A+ + GG GGGRP MA +GG      
Sbjct: 803 VFATTA-EDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860

Query: 886 DQAIAGVASFL 896
            QA++    ++
Sbjct: 861 LQALSLAQEWI 871


>gi|292487293|ref|YP_003530165.1| alanyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292900336|ref|YP_003539705.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291200184|emb|CBJ47312.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291552712|emb|CBA19757.1| Alanyl-tRNA synthetase [Erwinia amylovora CFBP1430]
          Length = 876

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/910 (44%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  ASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAIAFAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LIQ+  QVTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIQSVAQVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQSQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+E+F KTL+RGL LLD  L +L + ++L+G+  F+LYDT G P+D+  D+   R L 
Sbjct: 361 RTEEEQFAKTLERGLALLDEELENL-QGDMLDGETVFRLYDTFGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S G GS     I         A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRARDAS-GFGSDYNNVIRID-----QASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   G+      +GQ+  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAISAIFVDGQAANTISAGQEGVIVLDATPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     +++ QK A+ I  H   +  G LR    +   +D   R ++ +NHSATH
Sbjct: 510 GKLQGNSASFIVSNTQKYAQAI-GHSGKLAIGELRVGDCVAAQVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +  + +T  E++ +E+ VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDTYLRFDFSQFEAMTPQEMRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKANHSNLNEKVRALIDHARALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|300718056|ref|YP_003742859.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299063892|emb|CAX61012.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 875

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/910 (43%), Positives = 557/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWEKEVGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRFIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI +  +VTG     +   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFARLIASVAEVTGATDLTSK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L + MGSA  EL   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAQGSFFWKLVGPLISVMGSAGEELASQQSQVEQIL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L  L + + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELEKL-QGDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S G G+      +  + +   A+ F GY+ L        
Sbjct: 420 -IDEAGFEKAMEQQRQRAREAS-GFGAD-----YSKVIQIDAASAFKGYEQLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V AI   G+   E V+GQ+  +V D+TPFY E+GGQ+GDT
Sbjct: 466 ----------------LNSTVTAIFVDGKPATEIVAGQEGVIVLDETPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK  + I  H   +  G +R    L   +D   R ++ +NHSATH
Sbjct: 510 GELKSDAATFTVNDTQKYGQAI-GHTGTLAAGQIRIGDRLSAQVDQARRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   E++ +E+ VN  + +NL + T
Sbjct: 569 LLHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMKPEEIRQVEEIVNAQVRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A + GA AL G KY+D VRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMELEAAKSHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   +  Q E+L+ +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALGLMYAQSEQLQEIAHLIKANNSNLNEKVRAMIDHVRGLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I     +   +S V+ K L++++D L+ +++S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSKAIEIKGTRLLVSELSNVEPKMLRTMVDELKNQLKSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRVKAGELVGELAQQV-GGKGGGRPDMAQAGGTDAQALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|259909418|ref|YP_002649774.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224965040|emb|CAX56571.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283479495|emb|CAY75411.1| alaS [Erwinia pyrifoliae DSM 12163]
          Length = 876

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI++  Q+TG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQLTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L   +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L +L + + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELENL-QSDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S G G       + ++     A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRARDAS-GFGCD-----YNNVIHIDQASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   G+  +   +G++  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+   L +++ QK A+ I  H   +  G LR    +   +D   R ++ +NHSATH
Sbjct: 510 GELQGNSASLIVSNTQKYAQAI-GHSGKLATGELRVGERVAAQVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H + +T  E++ +E+ VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+++L  ++  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV-GGKGGGRPDMAQAGGTDAMALP 861

Query: 887 QAIAGVASFL 896
            A+AGV  ++
Sbjct: 862 AALAGVELWV 871


>gi|330879688|gb|EGH13837.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 874

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/913 (43%), Positives = 544/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASARAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP++EGRGYVLRRI+RRA  +   LG        ++ AL TEMGSA+PEL+Q +  IE  
Sbjct: 298 LPSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEEGFEREMEAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G  +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSAT
Sbjct: 507 SGFLLAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVV
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVV 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|269140202|ref|YP_003296903.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267985863|gb|ACY85692.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304560033|gb|ADM42697.1| Alanyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 875

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYESDDEAYDIWANEVGVPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI  + +V G+    +   + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVSDLSSK--SLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA   L Q + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGSAADALAQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G PLD+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLTLLDDELSTL-DGDTLDGETAFRLYDTYGFPLDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR  S G G+      + S+    G+T F GY L +       
Sbjct: 420 -VDEEGFERAMEAQRRRARESS-GFGAD-----YNSMIRVDGSTDFTGYHLQQQD----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+   G+ V+   +G++  VV  QTPFYAE+GGQ+GD 
Sbjct: 468 ------------------ALVTALFHNGQAVDALQAGEEGVVVLAQTPFYAESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R  + D QK  + I  H   V +G LR    +  +ID   R ++  +HSATH
Sbjct: 510 GELTAQGCRFVVEDTQKYGQAI-GHLGKVAQGSLRVGERVQASIDGARRERIRQSHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL ++LG HV+Q GS ++   LRFD +H++ +   +++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPQQIRQVEDIVNAQIRRNLPIDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IV
Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   +  V+ K L++++D L+ ++ S I++
Sbjct: 744 KALQQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMGSCIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   ++  K S++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LA-TAEAGKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
           QA+A V  ++
Sbjct: 862 QALASVTDWV 871


>gi|205830248|sp|A9MFZ1|SYA_SALAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+ +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYGIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG     N   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLSNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERDIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFETAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVNGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    + D QK  + I  H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGVGFTFAVNDTQKYGQAI-GHLGKLSAGALKVGDVVQADVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS ++   LRFD +H++ +  +E++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRQVLGAHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY++RVRV+S+     G  S+ LCGGTH   TG+I L  I+
Sbjct: 629 HIMELEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHARRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERSRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKDQAAAQESASLSSKAVDLNGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+  R  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-EGKVSLIAGVSKDVTGRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVQDWV 871


>gi|110633619|ref|YP_673827.1| alanyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|110284603|gb|ABG62662.1| alanyl-tRNA synthetase [Chelativorans sp. BNC1]
          Length = 909

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/894 (52%), Positives = 622/894 (69%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL+FF+KNGHE++ S  L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 23  MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 83  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 142

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D +RL +TVY  D+EA   W+KI+GL  ++IIRI T+DNFW+M +TGPCGPCSEIFFD  
Sbjct: 143 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 202

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+EQ +  ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 203 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 262

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI A+E+  G++ EG    +++VI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 263 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 322

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 323 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 382

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      +G+ + L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+  FN
Sbjct: 383 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 441

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WFS+K++ GAT F+GY+                  
Sbjct: 442 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYET----------------- 484

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A+V+ G +VE A  G++V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 485 ------EEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 538

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I + QKK EG+FVH   V++G +R    + L +D++ R ++  NHSATHLLH AL  
Sbjct: 539 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 598

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + PD LRFD +H KPI   EL+ IED  N+++ QN PVVTR+M  +DA
Sbjct: 599 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 658

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV++TG+I L++I+ E 
Sbjct: 659 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 718

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG  AR +L  Q+ +LK+ AS LKVS G+++ R+E + EE RKL+   
Sbjct: 719 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 778

Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++ + +L +   +         ++  V F+  ++  +  K+LK + D  +K + SG+++ 
Sbjct: 779 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 838

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG S+E KASV++ VT+DL  RF+AVDL R ++  +GG GGGGRP MAQ+GGP+
Sbjct: 839 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 892


>gi|323137975|ref|ZP_08073049.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322396694|gb|EFX99221.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 889

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/908 (49%), Positives = 603/908 (66%), Gaps = 35/908 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNQIRSAFLDYFVRNGHEKVASSPLVPHNDPTLMFTNAGMVQFKNVFTGVEKRHQAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L
Sbjct: 61  AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEGAIELAWGLITKEFSL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +D+EAF LWKKI+G    +IIRI ++DNFWSM +TGPCGPCSEIF+DQG
Sbjct: 121 PVEKLLVTVYHDDDEAFDLWKKIAGFHDSRIIRIASSDNFWSMGDTGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQ+EQ    +R  LP+ SIDTGMGLER+A ++Q 
Sbjct: 181 ETLTGGPPGSPGEDGDRFLEFWNLVFMQYEQVAPGQRAPLPRPSIDTGMGLERIAALMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NY+IDLF+ L  A  + TG    G    +HRVI DHLR+SSFL+ADG+ P+NEGRGY
Sbjct: 241 VTSNYEIDLFRSLTGAVAEYTGAPVGGPQGASHRVIADHLRASSFLVADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A++LG  EPLM  L+P L  EMG AYPEL++A+ LI +TL++E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQILGAQEPLMWRLVPTLVAEMGQAYPELVRAQALIVDTLKTEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL +LD   ++LG+ + L+G+ AFKLYDT+G PLD+ +D L  RG+ G+D  +FN
Sbjct: 361 ATLARGLAILDDETANLGRGDKLSGETAFKLYDTYGFPLDLTEDALRPRGV-GVDKEAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF+LKE+ G T+F+GY+                  
Sbjct: 420 AAMERQRAEARKAWAGSGETATETLWFALKERLGTTEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V AIV  G        G +  V+ +QTPFY E+GGQ+GD G   G  +
Sbjct: 463 ------EKSEGVVSAIVHDGAEAFVLKQGARGAVILNQTPFYGESGGQVGDVGVMRGRNV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ + QKK   + VH  +VE G +   + L L +D++ RR    NHSATH+LH AL  
Sbjct: 517 RFRVENTQKKLGDLIVHEGVVEEGEIVPGVVLELDVDHERRRATRANHSATHILHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD TH KP+T  EL  +E   N+I+  N PV TR+M ++DA
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDFTHPKPLTEEELARVEALANEIVQDNAPVDTRLMAQDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I SGA AL G KY D VRVVS+   D GV    S  LCGGTHVS TG+I L+ IV E ++
Sbjct: 637 IRSGARALFGEKYGDEVRVVSMGRPDPGVAHPFSVELCGGTHVSRTGDIGLISIVGEGAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA T + ARS L+ Q   L+ +AS ++        R+ ++ EE ++L+  L  
Sbjct: 697 ASGVRRIEARTAEGARSQLVAQSRALREIASLIRAPMEEAPARLGQLLEERKRLERDLAD 756

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+RKL +              +A V  ++  +  VD+K+LKS++D  +K I SG++    
Sbjct: 757 ARRKLAMGGGSGNGGGQEWRDVAGVKLLTRAVDGVDAKDLKSLVDDAKKNIGSGVVAFAC 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S + KA +++ VT+DL  +F+AV+  R+++  LGG GGGGRP +AQ+GGPN    +QA+
Sbjct: 817 ASPDGKAGIVVGVTDDLTSKFSAVEFVRVASATLGGKGGGGRPDLAQAGGPNAAAIEQAL 876

Query: 890 AGVASFLK 897
           A V   L+
Sbjct: 877 ASVEDALR 884


>gi|307261112|ref|ZP_07542790.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869194|gb|EFN00993.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 874

 Score =  984 bits (2545), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NE RGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNESRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+D   R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|261492574|ref|ZP_05989127.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311733|gb|EEY12883.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 875

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 546/911 (59%), Gaps = 55/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FLEFFQ  GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G    GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +K   N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +  +LG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGTKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   FN  +  QR RA+A S      +    + ++ +    T F GY     +    
Sbjct: 418 K-IDEDGFNAEMTAQRERAKASS------SFGTDYNNVIKVDSKTCFSGYTETSLND--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V  +   G+ VE   SG+   V+ D+TPFYAE GGQ+GD
Sbjct: 468 -------------------ATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +    ++ D QK  + +F H   +  G L     +   +D + R  +++NHSAT
Sbjct: 509 SGQISAEICNFEVVDTQKYGQ-VFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD++  + IT ++L+ +E  VN  + +N+ V+
Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A A GA AL G KY + VRVV +        S  LCGGTHV  TG+I L  I
Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRVVEM-----SDFSIELCGGTHVKQTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE ++ AG+RRIEA+TG+ A + L    + ++  A  LK    + V ++ ++ E+ ++ 
Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +          +I  VN +   +  V+ K L++++D L+ ++ S ++
Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    + E K ++++ VT+DL D+ NA  L    A+ + GG GGGRP MA +GG      
Sbjct: 803 VFATTA-EDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860

Query: 886 DQAIAGVASFL 896
            QA++    ++
Sbjct: 861 LQALSLAQEWI 871


>gi|16126768|ref|NP_421332.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221235548|ref|YP_002517985.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|20532261|sp|Q9A5C1|SYA_CAUCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13424088|gb|AAK24500.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220964721|gb|ACL96077.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 880

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/904 (49%), Positives = 592/904 (65%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F K  H + PS+ L+P NDPTL+F N+GMVPFKN+FTG E P +  
Sbjct: 1   MPSLNEIRSTFLDYFGKADHAVTPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT EF L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILHAWTLLTAEFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  LWKKI+GL  D+IIRI T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYHTDDEAADLWKKIAGLGDDRIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGERISLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDLFK LI AS ++TG+K EG    +HRVI DHLRSSSFL+ADG+ P+NEGRGY
Sbjct: 241 QHDNYDIDLFKALIAASVELTGVKAEGAQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L P L  EMG AYPEL +A+ LI ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGASEPLMHRLAPTLVREMGQAYPELRRAEALIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LLD   ++L    +L+G+ AFKLYDT+G PLD+ QD + A+GL  +D  +F+
Sbjct: 361 TTLGRGMGLLDEATANLAAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR  ARA+  G G       WFS+KEK GAT F+GY+                  
Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFSIKEKAGATDFVGYETTET-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    + +VKAIV  G  VE A +GQ VEV+ D+T FYAE+GGQ GDTG     G 
Sbjct: 466 ---------TGVVKAIVVDGAEVESASAGQTVEVLLDRTSFYAESGGQAGDTGVIEAHGR 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +    L+    +V ++D   R     NHSA HL+H AL  
Sbjct: 517 ESRVLDTQKQAGELHVHRVELASD-LKVGDQVVASVDADRRNTTRSNHSAAHLVHAALHH 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T+ EL  IE  VN++I QN+P  T+ M  ++A
Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTAEELDRIEAEVNEVIRQNVPAETKEMAPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++     ++   +S  LCGGTHV+ TG+I L  IVSE  +
Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLADEAKAYSVELCGGTHVARTGDIALFKIVSEQGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR  L+ Q    K+LA   K     V  RV+ +  + ++L+   A+
Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVATRVDALIADRKRLEKELAE 755

Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K QL +           +     ++ ++  V  KEL+ V +  +K++ SG++ LVG S 
Sbjct: 756 AKKQLALGGGGAASGPEDVNGTALIARVLDGVGGKELRGVAEEFKKQLASGVVALVGTS- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  +F+A DLA+ +   +GG G GG+   AQ G P+ +KA++ +A V
Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKAEEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KALL 878


>gi|114775361|ref|ZP_01450929.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114553472|gb|EAU55853.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 871

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/901 (44%), Positives = 551/901 (61%), Gaps = 38/901 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F   GH ++ SSSL+P  DPTLMFTN+GMV FK++F G E   Y+  
Sbjct: 1   MRTSEIRKKFLDYFAAEGHTIVDSSSLVPHGDPTLMFTNAGMVQFKHVFLGNESRPYRTA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT E  LD
Sbjct: 61  TTSQKCVRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKHDAIRYAWQFLTGELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ITV++ED+EA+ +W K  G+ AD+I RI   DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PARLFITVFEEDDEAYDIWTKEVGIPADRIARIGAKDNFWSMGDTGPCGPCSEIFYDHGA 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PG++ E+G+RYIEIWNLVFMQ+++        LP  S+DTGMGLER+A V+Q  
Sbjct: 181 DVWGGPPGTAEEDGDRYIEIWNLVFMQYDRDEDGTLTPLPHPSVDTGMGLERVAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NNYDIDLF  LI A+  +TG++   +  + V+ RV+ DHLRS SFL+ADG+LP+NEGRG
Sbjct: 241 HNNYDIDLFARLIDAAGALTGVRMGDDPVSDVSLRVLADHLRSVSFLLADGVLPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +VLRRI+RRA  + RLLG  E  +  L+ AL  EMG  + EL +++  IE+ +R E+ERF
Sbjct: 301 FVLRRILRRACRHGRLLGMYEAFIYKLVDALVAEMGDHFAELKESQGNIEQVIRIEEERF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTLD+GL L++   +  GK   + G+  F LYDT G P D+  DIL    ++ +D+  F
Sbjct: 361 IKTLDKGLKLVEQAAASAGKGGTIPGETLFALYDTFGFPTDLTADILKGTDIS-LDMDGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + +EEQR+RARA   G G     K  F L+E +G T+F+GYD L               
Sbjct: 420 ERCMEEQRTRARAAWGGSGESALPKALFELREHHGPTEFLGYDTL--------------- 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       ++  +++ GE V+   +G++  ++ +QTPFYAE+GGQ GDTG      
Sbjct: 465 --------SSEGVITGLIRDGEAVDTLHAGEEGWLIANQTPFYAESGGQAGDTGLITIGD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              +++D +K    +FVH   V +G       +   +D   R  +  NH+ATHL+H  L 
Sbjct: 517 AIFEVSDTRKMLSDLFVHTGKVVKGSFEAGSVVHFAVDEDRRAAIRRNHTATHLMHAVLR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD  H KP++  E K IE  VN  I  N PV T++M++++
Sbjct: 577 KVLGEHVKQAGSLVNEQRLRFDFNHFKPVSEEERKVIEAEVNAAIWANDPVETKLMSQDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ASGA AL G KY D VRVVS         S+ LCGGTHVS+TG+I    IVSE+ I A
Sbjct: 637 AVASGAMALFGEKYGDEVRVVSAG------FSTELCGGTHVSATGDIGPFRIVSEAGIAA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG  A   L+     L+  A  LKV        V  +  + +  +      +
Sbjct: 691 GVRRIEAVTGSAAYQSLVADIHTLEEAAGHLKVRPFEAADAVVTLQGKLKDAEKELTSLR 750

Query: 779 LQLNVE--DLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEKK 835
            + +    D    +  +VN +  +  EV   K+++  MD  + K++SG I++ G+    K
Sbjct: 751 AKQSTGLLDDLIKQAVEVNGVKLLAVEVSGVKDMRDFMDKAKGKLKSG-ILVFGMKNGPK 809

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT+DLL  ++A ++ R  A ++ GG GGG+P MA +GG   +K  QA+AGVA+ 
Sbjct: 810 VQLIAGVTQDLLGSYHAGNIVREVA-MICGGKGGGKPDMAMAGGTEPDKLKQALAGVAAL 868

Query: 896 L 896
           +
Sbjct: 869 I 869


>gi|307249853|ref|ZP_07531828.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858107|gb|EFM90188.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 874

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFTVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKVKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|238921100|ref|YP_002934615.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
 gi|238870669|gb|ACR70380.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 875

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+F+   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYESDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI  + +V G+    +   + RVI DH+RS +FL++DG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIAETARVIGVSDLSSK--SLRVIADHIRSCAFLVSDGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG++   L Q + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGASADALAQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L   + L+G+ AF+LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLTLLDDELSTL-DGDTLDGETAFRLYDTYGFPLDLTADVCRERSLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR  S G G+      + S+    G+T F GY L +       
Sbjct: 420 -VDEEGFERAMEAQRCRARESS-GFGAD-----YNSMIRVDGSTDFTGYHLQQQD----- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+   GE V+   +G++  VV  QTPFYAE+GGQ+GD 
Sbjct: 468 ------------------ALVTALFHNGEAVDVLQAGEEGVVVLAQTPFYAESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +  G R  + D QK  + I  H   V +G LR    +   ID   R ++  +HSATH
Sbjct: 510 GELMAQGCRFVVEDTQKYGQAI-GHLGKVAQGSLRVGERVQAGIDGARRERIRQSHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL ++LG HV+Q GS ++   LRFD +H++ +   +++ +ED VN  I +NLP+ T
Sbjct: 569 LMHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPRQIRQVEDIVNAQIRRNLPIDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  E+A A GA AL G KY+ +VRV+S+     G  S+ LCGGTH   TG+I L  IV
Sbjct: 629 QEMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG++A   +  + + L+  AS +K    +V  ++  + E+ R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   +  V+ K L++++D L+ ++ S I++
Sbjct: 744 KALHQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMSSCIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   ++  K S++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LA-TAEAGKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDTAALP 861

Query: 887 QAIAGVASFL 896
           QA+A VA ++
Sbjct: 862 QALASVADWV 871


>gi|296158159|ref|ZP_06840991.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295891495|gb|EFG71281.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 874

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 541/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG+AYPEL  A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKDAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+ L  G  + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA           K+   L+     T F GYD +        
Sbjct: 419 -VDEAAFDEAMTRQREQARAAGK-------FKMAQGLEYSGEKTTFHGYDEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V++A  GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVIALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMSFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|294012144|ref|YP_003545604.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292675474|dbj|BAI96992.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 884

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/904 (48%), Positives = 594/904 (65%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D F+ LI+ S  +T    EG    +HRVI DHLRS+SFLIADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFRALIEESGALTKTATEGEFKASHRVIADHLRSTSFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+ +L +EMG AY EL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMHRLVGSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL G+D   F+
Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY    G              
Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGYSSTEG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                       V AIV+ G   + A +G+ V +V +QTPFY E+GGQ+GD G      G
Sbjct: 466 ---------EGEVVAIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   + D  K    +  H A +  G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSVKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H + +T  ++ +IE +VN+ +  N  V TR+M  +D
Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHGQIAAIEADVNEQVRHNEAVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I +  I+SES++ +
Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L  ++++L+  A+ LK +   V  R+  + E+ RKL+   A+ K
Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRKLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +            KI  VNF+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGGSAQAAGPEKIGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAILAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +A++ + VT+DL+   +AVDL R   + LGG GGGGRP MAQ GGP+G+KA+ A+  V
Sbjct: 816 DGRATIAVGVTDDLVGSISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKAEAALEAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KAAL 879


>gi|307256675|ref|ZP_07538454.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306864723|gb|EFM96627.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 874

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRKNIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|91784488|ref|YP_559694.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|122970272|sp|Q13W97|SYA_BURXL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91688442|gb|ABE31642.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 874

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 542/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+ L  G  + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA           K+   L+     T F GYD +        
Sbjct: 419 -VDEAAFDEAMTRQREQARAAGK-------FKMAQGLEYSGEKTTFHGYDEVVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V++A  GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVIALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMSFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASRKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|90580351|ref|ZP_01236158.1| alanyl-tRNA synthetase [Vibrio angustum S14]
 gi|90438653|gb|EAS63837.1| alanyl-tRNA synthetase [Vibrio angustum S14]
          Length = 874

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/909 (41%), Positives = 536/909 (58%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF++W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLVVTVYETDDEAFEIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+ + +V G +   N   + RV+ DH+RS ++LI+DG++P
Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFEDLSNQ--SLRVVADHIRSCAYLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++ FG+TLDRGL +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEDNFGRTLDRGLTILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR       +G     +    +    T+F GY    G       
Sbjct: 419 IDEDGFEAAMEEQRQRAR------DAGNFGVDYNDAIKVDAETEFCGYSATDG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+ + G  V+   +G++  VV   TPFYAE+GGQ GD+G
Sbjct: 466 ----------------EGEIVALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G+   + D QK       H   V  G L     L  ++D   R  +S+NHSATHL
Sbjct: 510 ILTAEGVLFNVADTQK-FGAAIGHKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ILG HV+Q GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T 
Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+S
Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  A   +  +D  L   A  +K    +VV +VE +    ++L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGASAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++         +I  V  +   ++  D+K L+ ++D L+ ++ SG+++L
Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 -GNVSDDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861

Query: 888 AIAGVASFL 896
           A+  VA +L
Sbjct: 862 ALETVAPWL 870


>gi|116048827|ref|YP_792373.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122257933|sp|Q02I63|SYA_PSEAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115584048|gb|ABJ10063.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 874

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/913 (44%), Positives = 557/913 (61%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RARA S           + SL +  G T+F+GY  + G     
Sbjct: 417 T-IDEDGFEREMEAQRERARASS------AFGMDYNSLVKVDGETRFLGYQGVSG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +  + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 465 ------------------AGQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+R  + D  K A G  +HH +V RG L    ++   +D   R+  ++NHSAT
Sbjct: 507 SGYLEAAGVRFDVRDTTK-AGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V 
Sbjct: 566 HLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I
Sbjct: 626 TEETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           +  +I     ++  +  +D K L +++D L+ K+   +I
Sbjct: 742 EKELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   + K  ++  VT+DL  +  A +L + +A  +GG GG GRP MAQ GG N  K 
Sbjct: 802 LL-GGELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKGG-GRPDMAQGGGTNAAKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F+++
Sbjct: 860 DEALALAQRFVEQ 872


>gi|23016227|ref|ZP_00055985.1| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 877

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/902 (49%), Positives = 598/902 (66%), Gaps = 36/902 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 4   MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW+L+TK+F +
Sbjct: 64  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWNLITKDFGI 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY +D++A   WKKI+GL   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 124 DKNRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 183

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  ++G+R+IEIWNLVFMQFEQ +K+ R  LPK SIDTGMGLER+A +LQ 
Sbjct: 184 DHIPGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRVPLPKPSIDTGMGLERLAALLQG 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD+DL + LI+AS + +    +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 244 KHDNYDVDLLRALIEASAESSNTDADGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G +EPL+  L+PAL  +MG AYPEL++A  LI ETL+ E+ RF 
Sbjct: 304 VLRRIMRRAMRHAHLMGCSEPLLWKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  ++ +G    L G+VAFKLYDT+G PLD+ QD L A+G+ G+D   F 
Sbjct: 364 VTLDKGLKLLDDEITRIGSAGKLAGEVAFKLYDTYGFPLDLTQDALKAKGI-GVDTDGFA 422

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF L+EK GA++F+GYD                  
Sbjct: 423 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYDA----------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G++VE    G  V V+ +QTPFY E+GGQ+GDTG     G 
Sbjct: 466 ------EQAEGKIVALVENGKVVEAVHPGHSVAVIANQTPFYGESGGQMGDTGIITVAGG 519

Query: 540 R--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           +  + +TD QKK   + VH   VE G +         +D   R     +HSATHLLH  L
Sbjct: 520 KATITVTDTQKKLGDLVVHFGTVEGGPVAVGEDAHFAVDSSRRDATRGHHSATHLLHAVL 579

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV+Q GS + PD LRFD  H+K ++  E +++E  VN  I  N  V T +M  +
Sbjct: 580 RGILGDHVTQKGSQVGPDRLRFDFAHTKALSPEESRAVEAEVNRRIRVNAEVATTVMTPD 639

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DAI +GA AL G KY + VRVVS+     G  S+ LCGGTH   TG+I    IV+ES++ 
Sbjct: 640 DAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHARRTGDIGGFKIVAESAVA 694

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG    +    Q++ L   A  LK +  ++  R+  + +E RKL+   A+ 
Sbjct: 695 SGVRRIEAVTGPAFLAWAQAQEDLLARAADTLKAAPTDLPARIAGLMDERRKLERELAEV 754

Query: 778 KLQLNVEDLSCHKIADVNFMSH---IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + QL            VN +++   +++ V  K+LK + D ++K+I SG+I+LV    + 
Sbjct: 755 RKQLATGGGQGAATKTVNGITYAGKVLNGVPPKDLKGMADEIKKQIGSGVIVLVS-DADG 813

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           KAS+++ VTEDL  +++AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A  A+  +  
Sbjct: 814 KASIVVCVTEDLTAKYSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAVDKIEQ 873

Query: 895 FL 896
            L
Sbjct: 874 AL 875


>gi|123441185|ref|YP_001005172.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|205830291|sp|A1JK09|SYA_YERE8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122088146|emb|CAL10934.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 875

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 557/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + +L     A+QF GY+          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNNLIRVDSASQFSGYN---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 463 -------------HVHQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYGQAI-GHLGQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDTNNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++      +   +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG N     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTSKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|165976064|ref|YP_001651657.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|205829970|sp|B0BNS8|SYA_ACTPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|165876165|gb|ABY69213.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 874

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/912 (41%), Positives = 544/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQTPFYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFTVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|238756253|ref|ZP_04617569.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238705508|gb|EEP97909.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 874

 Score =  983 bits (2542), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/909 (43%), Positives = 562/909 (61%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  K F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI         DNFW M +TGPCGPCS
Sbjct: 123 LPKEKLWVTVYETDDEAYDIWANDVGVPRERIIRIGDKGAAFASDNFWQMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ    NY+IDLF+ LI A   VTG     +   + RVI DH+RS +FLI+DG++P
Sbjct: 243 IAAVLQHVNTNYEIDLFRDLITAVADVTGASDLSSK--SLRVIADHIRSCAFLISDGVIP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +  +LG  E     L+  L T MG A  EL Q + ++E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLITVMGPAADELKQQQAMVEQVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L  
Sbjct: 361 TEEEQFARTLERGLALLDEELSQLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F QA+E QR RAR  S G G+      + SL     A++F+GYD +         
Sbjct: 419 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDTASEFLGYDHIE-------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + GE V+E  +G+   VV +QTPFY E+GGQ+GD G
Sbjct: 465 ---------------QQATVIALFRNGEAVDEVHTGEDAVVVLNQTPFYGESGGQVGDEG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     ++D QK  + I  H   + RGILR   S+   +D   R ++ +NHSATHL
Sbjct: 510 VLKSAMADFIVSDTQKYGQAI-GHLGQLSRGILRVNDSVDAVVDSMRRNRIRLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN  I +NLP+ T 
Sbjct: 569 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAQIRRNLPIQTE 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A   GA AL G KY+D+VRV+++     G  S+ LCGG H + TG+I L  I++
Sbjct: 629 LMELDEAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRILT 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES   AGIRRIEA+TG+ A + L  Q + L+++A  +K    N+  ++  + +  + L+ 
Sbjct: 684 ESGTAAGIRRIEAVTGEGAMALLHQQSDLLQNIAHLVKGDSNNLTDKIRTVLDRSKALER 743

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K Q   ++      S  ++  V  +   +  V++K L++++D L+ ++ S II+L
Sbjct: 744 ELQQLKDQQAAQESASLSASAKQVNGVKLLVSRLDNVEAKMLRTMVDDLKNQLGSAIIVL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K S+++ VT+DL +R  A +L    A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 ATTA-DDKVSLIVGVTKDLTNRVKAGELIADIAQKV-GGKGGGRPDMAQAGGTDVQALPS 861

Query: 888 AIAGVASFL 896
           A+A V +++
Sbjct: 862 ALASVEAWV 870


>gi|313105787|ref|ZP_07792050.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|310878552|gb|EFQ37146.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 874

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/913 (44%), Positives = 557/913 (61%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RARA S           + SL +  G T+F+GY  + G     
Sbjct: 417 T-IDEDGFEREMEAQRERARASS------AFGMDYNSLVKVDGETRFLGYQGVSG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +  + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 465 ------------------AGQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+R  + D  K A G  +HH +V RG L    ++   +D   R+  ++NHSAT
Sbjct: 507 SGYLEAAGVRFDVRDTTK-AGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V 
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I
Sbjct: 626 TEETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           +  +I     ++  +  +D K L +++D L+ K+   +I
Sbjct: 742 EKELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   + K  ++  VT+DL  +  A +L + +A  +GG GG GRP MAQ GG N  K 
Sbjct: 802 LL-GGELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKGG-GRPDMAQGGGTNAAKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F+++
Sbjct: 860 DEALALAQRFVEQ 872


>gi|330446966|ref|ZP_08310617.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491157|dbj|GAA05114.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 874

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/909 (41%), Positives = 535/909 (58%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLVVTVYETDDEAFDIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+ + +V G     N   + RV+ DH+RS ++LI+DG++P
Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFDDLSNQ--SLRVVADHIRSCAYLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++ FG+TLDRGL +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEDNFGRTLDRGLTILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR       +G     +    +    T+F GY    G       
Sbjct: 419 IDEEGFEAAMEEQRQRAR------DAGNFGVDYNDAIKVDAETEFCGYSATDG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+ + G  V+   +G+   VV   TPFYAE+GGQ GD+G
Sbjct: 466 ----------------EGEIVALYRDGVAVDSVNAGEDALVVLTNTPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G+   + D QK       H   V  G L     L  ++D   R  +S+NHSATHL
Sbjct: 510 ILTAEGVLFNVADTQK-FGAAIGHKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ILG HV+Q GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T 
Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVEIMVNDQIRDNHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+S
Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  A   +  +D  L   A  +K    +VV +VE +    ++L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGAAAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++         +I  V  +   ++  D+K L+ ++D L+ ++ SG+++L
Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 -GNVSDDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861

Query: 888 AIAGVASFL 896
           A+  VA +L
Sbjct: 862 ALETVAPWL 870


>gi|315499502|ref|YP_004088305.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315417514|gb|ADU14154.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 880

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/904 (49%), Positives = 593/904 (65%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR TFL++F KN HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNQIRQTFLDYFAKNDHEIVSSSSLVPHNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+L+TKE+ L
Sbjct: 61  ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAISHAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+EAF LWKKI+G S D+IIRI  +DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PKDRLLATVYIDDDEAFNLWKKIAGFSDDRIIRIAGSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++EIWNLVFMQF+QQ    R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQFDQQTDGTRLNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI+AS + TG+K EG  + +HRVI DHLRS+SFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKALIRASVEETGVKAEGEALPSHRVIADHLRSTSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L P L  EMG  Y EL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMPRLAPVLVREMGDHYGELKRAEATIIETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LLD   ++L   ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++  F 
Sbjct: 361 RTLGRGMTLLDEATANLKDGDMLEGEVAFKLYDTYGFPLDLTQDAIRAKGLS-VNVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ R RA+  G G  + +  WFS++++ GA++F+GY+ L                
Sbjct: 420 AAMGEQKQRGRANWKGSGETSVQAEWFSIRDQAGASEFVGYEHLSTQSHA---------- 469

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                        + IV+ GE V E + G++++VVFD+T FY E GGQ GDTG     G 
Sbjct: 470 -------------RVIVRDGESVSEGLVGERLQVVFDRTVFYPEGGGQAGDTGTLHWAGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK+A  + VH   +  G+L     + L +D   R+    NHSA HLLH AL  
Sbjct: 517 EGRVLDTQKQAGDLIVHDVEITEGVLAVGDMVHLHVDGAKRQTTKSNHSAAHLLHAALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P++  E++ IE  VN +I QN    T++M   +A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGAPVSPEEIERIEAEVNAVILQNEAATTKMMAPAEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+S+ +   G    +S  LCGGTHVS TG+I L  I+SES I
Sbjct: 637 IEAGAVALFGEKYGDEVRVLSLGHALDGADKGYSVELCGGTHVSRTGDIALFKIISESGI 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA TG+ AR +L+ Q    +SLA   KV    V  RVE +  + ++L+   A 
Sbjct: 697 AAGVRRIEAFTGEAARQYLLEQAGVARSLADQFKVPVAQVSARVEALVNDRKRLEKELAD 756

Query: 777 RKLQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K  L V    +      I  V  ++ ++  V  K+L+ + +  +K++ SG++ LVG+  
Sbjct: 757 AKRALAVGGGGKASGPEDINGVKVIARVLDGVGGKDLRPLAEDFKKQVGSGVVALVGV-L 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT DL  RFNA +LA+ +   +GG G GG+P  AQ G P+  KA+  +  +
Sbjct: 816 DGKAAVTVAVTPDLTGRFNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDATKAEGGLDAI 875

Query: 893 ASFL 896
            + +
Sbjct: 876 KAAI 879


>gi|15596100|ref|NP_249594.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|107100361|ref|ZP_01364279.1| hypothetical protein PaerPA_01001386 [Pseudomonas aeruginosa PACS2]
 gi|218893128|ref|YP_002441997.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|20532264|sp|Q9I553|SYA_PSEAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|9946804|gb|AAG04292.1|AE004524_9 alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|218773356|emb|CAW29168.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
          Length = 874

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/913 (43%), Positives = 557/913 (61%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RARA S           + SL +  G T+F+GY  + G     
Sbjct: 417 T-IDEDGFEREMEAQRERARASS------AFGMDYNSLVKVDGETRFLGYQGVSG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +  + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 465 ------------------AGQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+R  + D  K A G  +HH +V RG L    ++   +D   R+  ++NHSAT
Sbjct: 507 SGYLEAAGVRFDVRDTTK-AGGAHLHHGVVARGNLSVGGAVKAEVDASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V 
Sbjct: 566 HLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I
Sbjct: 626 TEETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           +  +I     ++  +  +D K L +++D L+ K+   +I
Sbjct: 742 EKELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   + K  ++  VT+DL  +  A +L + +A  +GG GG GRP MAQ GG +  K 
Sbjct: 802 LL-GGELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKGG-GRPDMAQGGGTDAAKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F+++
Sbjct: 860 DEALALAQRFVEQ 872


>gi|296390743|ref|ZP_06880218.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 874

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/913 (43%), Positives = 557/913 (61%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RARA S           + SL +  G T+F+GY  + G     
Sbjct: 417 T-IDEDGFEREMEAQRERARASS------AFGMDYNSLVKVDGETRFLGYQGVSG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +  + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 465 ------------------AGQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+R  + D  K A G  +HH +V RG L    ++   +D   R+  ++NHSAT
Sbjct: 507 SGYLEAAGVRFDVRDTTK-AGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +LK++ED VN  I +N  V 
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I
Sbjct: 626 TEETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ N++ ++  + E  R L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           +  +I     ++  +  +D K L +++D L+ K+   +I
Sbjct: 742 EKELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   + K  ++  VT+DL  +  A +L + +A  +GG GG GRP MAQ GG +  K 
Sbjct: 802 LL-GGELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKGG-GRPDMAQGGGTDAAKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F+++
Sbjct: 860 DEALALAQRFVEQ 872


>gi|90412109|ref|ZP_01220116.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90327087|gb|EAS43466.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 873

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 532/910 (58%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q RL +T+Y+ D+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 QDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ S +V G  YE  +  + RV+ DH+RS +FLI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG T      L   L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLAGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++ FG+TLDRGL +L+  L +L   E L+G+  FKLYDT+G P D+  D+   R    I
Sbjct: 361 EEDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A+E QR RAR      G    E I   +      T+F GY             
Sbjct: 419 DEEGFNNAMEAQRQRAREAGK-FGVDYNESIKVDV-----NTEFCGY------------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+ + GE V+  ++G+   ++ D TPFYAE+GGQ GD G 
Sbjct: 460 ----------TGTAAQSRIIALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +     +TD QK       H   + +G L     L   +D   R  +++NHSATHLL
Sbjct: 510 LTAESTMFNVTDTQK-FGAAIGHQGSLVQGALNIGDKLEAQVDVARRAAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD ++ + +   +L+ IE  VN+ I  N  + T I
Sbjct: 569 HSALRNLLGEHVAQKGSLVKADALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H  +TG+I L  I SE
Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A   L  Q+  L   AS +K    +V  +V  +    ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + + +L  ++         +I  V  +   +   D+K L+ ++D ++ K+ SGI++L 
Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +S + K  +++ VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A
Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861

Query: 889 IAGVASFLKK 898
           +  V  +L +
Sbjct: 862 LESVTPWLTE 871


>gi|327480000|gb|AEA83310.1| alanyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 874

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/913 (44%), Positives = 553/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ A+    G   EG    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERISAVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 TPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S           + SL +  G T+FIGY    GS    
Sbjct: 417 T-LDEEGFEREMQAQRERARSAS------AFGMDYNSLVKVEGETRFIGYQGTSGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD
Sbjct: 466 -------------------GKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G     G+R  + D  K A G F+HH IV+ G L T   +  T+D   R+  ++NHSAT
Sbjct: 507 CGYLEAQGLRFDVRDTSK-AGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V 
Sbjct: 566 HLLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I
Sbjct: 626 IEETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQL 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           S  ++  +  ++     +D K L +++D L+ K+ S +I
Sbjct: 742 EKELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K  ++  VT+DL  R  A DL R +A  +GG GG GRP MAQ GG +  K 
Sbjct: 802 LLGGVQ-DDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKGG-GRPDMAQGGGTDAAKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F ++
Sbjct: 860 DEALALALPFAQQ 872


>gi|318604467|emb|CBY25965.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 875

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPCERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + +L     A+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNNLIRVDSASQFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 463 -------------HVHQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G LR   S+   ID   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYGQAI-GHLGQLAHGTLRVNHSIDAQIDVARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAMLDRSKMLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++      +   +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  I+ + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG N     
Sbjct: 804 LATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|146278407|ref|YP_001168566.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|205830189|sp|A4WV47|SYA_RHOS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145556648|gb|ABP71261.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 883

 Score =  982 bits (2539), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/889 (50%), Positives = 578/889 (65%), Gaps = 37/889 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELLTRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK++GL  D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PREKLLVTVYHTDDEAASIWKKVAGLPDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGTGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL+  L  L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLDRGLRLLEDELDRLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E++GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAERHGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + AIV  G     A  GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 463 ------EKAEGQILAIVAGGVDTASATPGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV+K  +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDVRK-GQGLFLHFAEVTEGEIRPGQGAALEVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HSK +++ EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSKALSAEELATVEAEVNQFIRSNGMVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHV+  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGMDGQTYSLELCGGTHVARLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A +HL  Q ++L  +A+ LK S   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAHLNEQMQRLAEVAATLKASPAEMVDRVKALVEERRQLQN 755

Query: 773 IHAKRK---LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ +               I  V F++ I+  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAAAEAKDIGGVKFLAQIVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                KA++   VT DL DR +AV L + +A+ LGG GGGGRP MAQ+G
Sbjct: 816 -DTAGKAALAAGVTPDLTDRLSAVALVKAAAEALGGRGGGGRPDMAQAG 863


>gi|205830255|sp|A4VJB3|SYA_PSEU5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  982 bits (2539), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/913 (44%), Positives = 552/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 KLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ A+    G   EG    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERISAVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 TPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L    ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKNEEEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S           + SL +  G T+FIGY    GS    
Sbjct: 417 T-LDEEGFEREMQAQRERARSAS------AFGMDYNSLVKVEGETRFIGYQGTSGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ +QG +V+   +G++  VV DQTPFYAE+GGQ+GD
Sbjct: 466 -------------------GKVLALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G     G+R  + D  K A G F+HH IV+ G L T   +  T+D   R+  ++NHSAT
Sbjct: 507 CGYLEAQGLRFDVRDTSK-AGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HVSQ GS +    LRFD +H + I   +L+++ED VN  I +N  V 
Sbjct: 566 HLLHAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               + + A A GA AL G KY D VRV+++    GG  S  LCGGTHV+ TG+I L  I
Sbjct: 626 IEETDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R+L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQL 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           S  ++  +  ++     +D K L +++D L+ K+ S +I
Sbjct: 742 EKELEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K  ++  VT+DL  R  A DL R +A  +GG GG GRP MAQ GG +  K 
Sbjct: 802 LLGGVQ-DDKVVLVAGVTQDLTSRLKAGDLMRQAAAAVGGKGG-GRPDMAQGGGTDAAKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F ++
Sbjct: 860 DEALALALPFAQQ 872


>gi|15603152|ref|NP_246224.1| alanyl-tRNA synthetase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431888|sp|P57933|SYA_PASMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|12721647|gb|AAK03371.1| AlaS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 874

 Score =  982 bits (2539), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/913 (42%), Positives = 548/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHTKGHQIVASSALVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT     
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L   +L++TVY+ D+EA+ +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPAEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI    ++TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKDLSNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M  A   + + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIDVMAEAGIGVKEKQATVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+++ K E L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDEALANVKKGE-LSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID + F++ +E QR RA++ S           + ++    G T F GY          
Sbjct: 418 T-IDEVGFDREMEAQRLRAQSASQ------FGMDYNNVIRVEGCTTFEGYTASESL---- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD
Sbjct: 467 -------------------AKVTALFADGKPVERIEAGQSAVVILENTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G G   ++ D QK  + +F H   +  G L    S+   +D + R   S+NHSAT
Sbjct: 508 SGYLNGQGFSFEVKDTQKYGQ-VFGHIGELVSGSLTVGKSVNAVVDVKRRHNTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++   LRFD  H + IT A+L  IE  VN  I  N  + 
Sbjct: 567 HLLHAALRQVLGEHVVQKGSLVSDVALRFDFAHHEAITKAQLVEIECLVNQQIRANHLIQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  E A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  I
Sbjct: 627 TELMELEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            +E++I AGIRRIEAITG+ A S L  Q   L   A  LK    ++V +++++ ++ +K 
Sbjct: 682 TTETAIAAGIRRIEAITGENAMSWLHQQQALLAQSADLLKSDVNSIVEKIQQLQDKAKKA 741

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  KI DV+ +   +  VD+K L+ V+D L+ ++ S +I
Sbjct: 742 EKELQVLKEKSAMQAGSDLARSAVKINDVSVIVQKLDGVDTKSLRVVVDDLKNQLSSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +   + +E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 VFASVVEE-KVNLIVGVTSDLTSKVKAGELVNLLAQQV-GGKGGGRPDMAMAGGTQIENV 859

Query: 886 DQAIAGVASFLKK 898
           D A++   ++LK+
Sbjct: 860 DHALSFATTWLKE 872


>gi|152988514|ref|YP_001349956.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|205830183|sp|A6VA71|SYA_PSEA7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150963672|gb|ABR85697.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 874

 Score =  982 bits (2539), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/913 (43%), Positives = 553/913 (60%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L++AS +  G     ++  + +V+ DH+RS SFLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RARA S           + SL +  G T+F+GY  + G     
Sbjct: 417 T-IDEDGFEREMEAQRERARASS------AFGMDYNSLVKVDGETRFLGYQGVSG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +  + A+ + G+ VE    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 465 ------------------AGQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G     G+R  + D  K A G  +HH +V  G L    ++   +D   R+  ++NHSAT
Sbjct: 507 SGYLEAAGVRFDVRDTTK-AGGAHLHHGVVAEGGLSVGAAVKAEVDASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +LK++ED VN  I +N  V 
Sbjct: 566 HLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEDIVNAEIRRNTEVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I
Sbjct: 626 TEETDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A ++L G +E+LK  A  +K S+ N++ ++  + E  R L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAAGLVKGSRDNLLDKLGALLERNRSL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +           +   I     ++  +  +D K L +++D L+ K+   +I
Sbjct: 742 EKELEQLKAKAASAAGDDLSAAAVDIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   + K  ++  VT+DL  +  A +L + +A  +GG GG GRP MAQ GG +  K 
Sbjct: 802 LL-GGELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKGG-GRPDMAQGGGTDAAKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A    F+++
Sbjct: 860 DEALALAQRFVEQ 872


>gi|49474375|ref|YP_032417.1| alanyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|59798531|sp|Q6FZF1|SYA_BARQU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49239879|emb|CAF26277.1| Alanyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 888

 Score =  982 bits (2539), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/911 (51%), Positives = 634/911 (69%), Gaps = 37/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+SIR+TFL++F  NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+   + 
Sbjct: 1   MNSVNSIRSTFLDYFHLNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPCKQ 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR GGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI L+W+LLTKEF L
Sbjct: 61  ATTAQKCVRVGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFLSWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KIS LS +KI+RI T DNFW+M ETGPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHSDDVAAELWRKISNLSDEKIVRIATVDNFWAMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS +E G+R+IEIWNLVFMQ+EQ +K+ER  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DEIWGGPPGSANEGGDRFIEIWNLVFMQYEQVSKEERVELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS+++TG++  G+ I +HRVI DHLRS +FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFRALIGASQEITGVEATGDFIASHRVISDHLRSCAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EPLM  LLP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHFLGVKEPLMWRLLPVLVREMGQAYPELVRAESLISETLKLEEMRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+   S+L + +  NG++AFKLYDT+G PLD+ QD L  RG++ +D+ +F+
Sbjct: 361 KTLERGLGLLNEASSNLKEGDHFNGEIAFKLYDTYGFPLDLTQDALRCRGIS-VDVDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ Q++ ARA+  G G   TE IWF+++++ GAT+F+GY++                 
Sbjct: 420 KAMQRQKTEARANWSGSGEAVTETIWFAVRDRVGATEFLGYEI----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A++  G++V+   SGQK  +V +QTPFY E+GGQ+GD+G       
Sbjct: 463 ------EKAEGIITALICDGKVVDHISSGQKAIIVVNQTPFYGESGGQIGDSGIISSGCF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKK+ G+F+H   V+ G  +T   + LT+D   R+++  NHSATHLLH AL  
Sbjct: 517 VFEVHDTQKKSNGVFIHIGEVKSGQAKTFECVELTVDVVRRQKIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS + PD LRFD +H K ++S ELK IED  NDI+ QN  V T +M  +DA
Sbjct: 577 ILGPHVTQKGSLVLPDRLRFDFSHPKSVSSEELKKIEDLANDIVLQNSEVTTHLMALDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY--EDGGV---HSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY D VRVVS+    E  G+    S  LCGGTHV  TG+I L++IVSES
Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNPLEPEGLKKRWSIELCGGTHVERTGDIGLIHIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           S+ AG+RRIEA+TG  AR +   QDE+++ ++S LK    +V  RV  +  EY +L    
Sbjct: 697 SVAAGVRRIEALTGTAARLYFNRQDERIREISSLLKTVPADVGERVSNLLHEYNRLSQAC 756

Query: 774 -HAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++K+ L+   +  ++     I  ++FM  ++  +  ++LK+++D  +K+I SG++  
Sbjct: 757 IELRKKIILSGNTIKNNQEDITIINGISFMGRVVRNILPRDLKALVDDGKKQIGSGVVAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + +++  K S ++ VT DL D+ NAV+L  + + VLGG GGGGRP MAQSGGP G+KA  
Sbjct: 817 ISVAENGKGSAVVGVTNDLTDKLNAVNLIHILSDVLGGKGGGGRPDMAQSGGPEGDKAVG 876

Query: 888 AIAGVASFLKK 898
           A+A + + L+K
Sbjct: 877 ALAALRASLEK 887


>gi|330502669|ref|YP_004379538.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328916955|gb|AEB57786.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 874

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/913 (44%), Positives = 561/913 (61%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+  +++IRI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGIPTERMIRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ AS +  G   EG    + +V+ DH+RS SFLIADG+
Sbjct: 240 ERISAVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 TPSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLKILEQDLASL-QGSVIPGDVVFKLYDTYGFPVDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D   F + +E QR RAR+ S           + +L +    T+F+GY+   GS    
Sbjct: 417 S-VDEEGFEREMEAQRERARSAS------AFGMDYNALVKVDADTRFLGYEGTSGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 466 -------------------GKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G G+R  + D  K A G F+HH +V +G L    S+   +D + R+  ++NHSAT
Sbjct: 507 CGYLEGAGVRFDVRDTTK-AGGAFLHHGVVAKGGLNVGASVKAEVDAEVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   ++K +ED VN ++ +N  V 
Sbjct: 566 HLLHEALRIVLGDHVQQKGSLVNSQRLRFDFSHFEAIKPEQIKQLEDIVNRVVRENSAVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHV+ TG+I L  I
Sbjct: 626 TEVTDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVARTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  + AG+RRIEA+TG  A ++L G +E+LK  AS +K S+ NV+ ++  + E  R+L
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNVLDKLSALIERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +      +        +     ++  +  +D K L +++D L+ K+ S +I
Sbjct: 742 EKELEQLKAKAASAAGNDLAGSAVDVKGTKVLAARLDGLDGKALLALVDQLKNKLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+ +E K  ++  VT+DL  +  A DL R +A  +GG GG GRP MAQ GG +  K 
Sbjct: 802 LLGGVFEE-KVVLVAGVTQDLTSKLKAGDLMRQAAAAVGGKGG-GRPDMAQGGGVDAGKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A  A+ +++
Sbjct: 860 DEALALAATLVEQ 872


>gi|288960191|ref|YP_003450531.1| alanyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288912499|dbj|BAI73987.1| alanyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 889

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/895 (50%), Positives = 588/895 (65%), Gaps = 37/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF K GH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MQTANDIRRTFLDFFAKQGHQIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGAETRPYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+TKE+ L
Sbjct: 61  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIAFAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TV+  DE+A  +W+K++GLS D+IIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 PADKLLVTVHTSDEDAAAIWRKVAGLSDDRIIRIPTDDNFWRMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ+EQ        LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDNLVPLPKPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDIDL + LI AS + T    +G + V+HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDIDLMRALIMASAEATKTAADGAHAVSHRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+PAL  +MG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMIGAREPLMHRLVPALIQQMGDAYPELNRARALIVETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  + HLG+ + L GDVAFKLYDT+G PLD+ QD+L  +   G+D   F 
Sbjct: 361 QTLERGLRLLEDEVGHLGEGQPLAGDVAFKLYDTYGFPLDLTQDVLRGQN-RGVDEAGFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQR +AR    G G   TEK+W+ +K++ GAT+F GYD                  
Sbjct: 420 AAMDEQRRKARESWAGSGEVGTEKLWYEIKDELGATEFFGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDG 538
                       V AIV+    VE A  G +V VV +QTPFY E+GGQ+GD G      G
Sbjct: 463 ------EVAEGKVTAIVKGDTRVEAAAIGDQVMVVVNQTPFYGESGGQVGDAGVIFSAGG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + ++D  KK   ++ H   V +GIL     + L +D   R  +  NHSATHLLH AL 
Sbjct: 517 AEVAVSDTLKKLGAVWAHVGTVTKGILSVGDVVELRVDSSRRAAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS + P+ LRFD++    +T+A++ +IED VN  +  N  VVTR+M+ ++
Sbjct: 577 HRLGDHVTQKGSLVAPERLRFDISQPTGLTAADIAAIEDEVNRRVLANSEVVTRLMSPDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A A GA AL G KY D VRVVS+    G     +S  LCGGTHV  TG+I +  IVSE +
Sbjct: 637 ARAQGAMALFGEKYGDEVRVVSMGGPHGELDRDYSIELCGGTHVRRTGDIGVFKIVSEGA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG  A++ L  +D  L   AS LKV    V  RV  + EE RK++   A
Sbjct: 697 VAAGVRRIEALTGTGAKAWLSERDHLLTEAASVLKVKPDEVPARVATLVEERRKMERELA 756

Query: 776 KRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + Q+ +              +A V   + ++  + +K+LK + D L+K++ SG+++L+
Sbjct: 757 DLRRQVAMGGGAKADGGNEAKDVAGVKLAARVVEGLPAKDLKPMADELKKQVGSGVVVLI 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             S E KAS++I VT+DL    +AVDL R+ A+ LGG GGGGRP MAQ+GGP+ +
Sbjct: 817 A-SNEGKASIVIGVTDDLTGSLSAVDLVRVGAEALGGKGGGGRPDMAQAGGPDAS 870


>gi|295677107|ref|YP_003605631.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436950|gb|ADG16120.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 874

 Score =  982 bits (2538), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 536/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAADIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTEVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LIQA+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIQAAGRETGVTDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL QA+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGDAYPELAQAEKRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA           K+   L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGK-------FKMAQGLEYSGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGASVQQVQAGQPAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ +DA+  GA AL G KY D VRV+ +        S  LCGGTHV+ +G+I    IV
Sbjct: 629 RLMSYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRSGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   + ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELEARVNAAAAVLKAQPAELTQRIGQVQDQVKALE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|163856313|ref|YP_001630611.1| alanyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|205829993|sp|A9IK31|SYA_BORPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163260041|emb|CAP42342.1| alaS2 [Bordetella petrii]
          Length = 873

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/911 (43%), Positives = 549/911 (60%), Gaps = 53/911 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FFQ  GH ++PS+SL+P NDPTL+FTNSGMV FK++FTG+E   Y  
Sbjct: 1   MKS-SEIRQKFLQFFQSKGHTIVPSASLVPGNDPTLLFTNSGMVQFKDVFTGKETRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED++A+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PAEKLWVTVYQEDDQAYDIWATEVGVPRERIIRIGDNKGSRYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER
Sbjct: 180 EIFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF++LI+A+ + TG+    +N  + +VI DH+R+ +FLI DG++P
Sbjct: 240 IAAVLQGVHSNYEIDLFQNLIRAAARETGVTNLEDN--SLKVIADHIRACAFLIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL QA   + + L+
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTKPFFYKLVPDLVAEMGQAYPELTQAAERVAQVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +LDG L+ +     L+G   F LYDT+G P+D+  DI   R +  
Sbjct: 358 QEEERFGETLEHGMKILDGALAGVPAGGQLDGTTLFTLYDTYGFPVDLTADICRERNVE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F+ A+  QR +ARA           K+   L  +   T+F GY+ L         
Sbjct: 417 VDMAGFDAAMARQRDQARAAGK-------FKMAEGLSYEGADTRFEGYEKLELDGV---- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+   G  VE   +GQ   VV D TPFYAE+GGQ+GDTG
Sbjct: 466 ------------------KVAALYVDGTQVERVQAGQHAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G R  + D  K   G+F HH ++E G L    +L+  +D   R +   NHSATHL
Sbjct: 508 LLESGGARFAVADTLKIQAGVFGHHGVLESGSLAVGDTLLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS + PD  RFD  H  P+++ ++  +E  VN  +  N P   R
Sbjct: 568 MHKALRQVLGAHVQQRGSLVDPDKTRFDFAHDAPLSAEQIAQVEAIVNAEVLANQPTQAR 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV+
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVSRTGDIGLFKIVA 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           E  + AG+RR+EAITG  A + +  Q+  L   A  L+ +  ++  R+ ++ E+ R L+ 
Sbjct: 682 EGGVAAGVRRVEAITGDNALAWVQNQNALLLRAAGMLRTTPADLPERLAQVQEQLRTLEK 741

Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIML 827
            L  A+ KL  +  +    K A+V  +  + +   ++D K L+ ++D L+ +++S +++L
Sbjct: 742 DLEQARGKLAASAGNDLAAKAAEVKGVKVLAASLGDIDPKALRGMVDNLKDRLKSAVVLL 801

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                + K S++  VT DL  R  A DL    A  +GG GG GRP MA  GG +      
Sbjct: 802 ASAGGDGKISLVGGVTADLTGRVKAGDLVGFVAGQVGGKGG-GRPDMAMGGGNDAQALPA 860

Query: 888 AIAGVASFLKK 898
           A+A V  ++ +
Sbjct: 861 AVASVQGWVDE 871


>gi|85712448|ref|ZP_01043497.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85693726|gb|EAQ31675.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 867

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/902 (41%), Positives = 550/902 (60%), Gaps = 48/902 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F++FF++ GH+ +PS+S+IP NDPTL+FTN+GMVPFK++F G +K  Y   T
Sbjct: 4   TSAEIREKFIQFFEQRGHQRVPSASMIPANDPTLLFTNAGMVPFKDVFLGTDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+E  L  
Sbjct: 64  SAQRCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKTEAIEFAWHFLTQELQLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++TV++ED+EA+ +W K  G+  D+I RI   DNFWSM +TGPCGPCSE+F+D G  
Sbjct: 124 EKLWVTVFEEDDEAYDIWAKHIGVPEDRISRIGVKDNFWSMGDTGPCGPCSEVFYDHGPE 183

Query: 183 IPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG PG   E+G+RYIEIWNLVFMQ+ +Q       LP  SIDTGMGLER+A +LQ   
Sbjct: 184 VWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTMEPLPNPSIDTGMGLERIAAILQGVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ID F+ LI+ S  + G+    +   + RVI DH+RS SFLIADG++P+NEGRGYVL
Sbjct: 244 SNYEIDTFQALIKRSADIIGVSDLSSK--SLRVIADHIRSCSFLIADGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +  LLG  +     L+  L   MG AYPEL++ + +IE+ L+ E+++F KT
Sbjct: 302 RRIIRRAVRHGNLLGAKQTFFYQLVDELVKLMGEAYPELVEKRHIIEDALKREEQQFEKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL +L+  +  L  +  LNG+V FKLYDT+G P+D+  DI     L  ID   FN A
Sbjct: 362 LERGLAILNDEIKQLSGN-TLNGEVVFKLYDTYGFPMDLTADIARENEL-VIDEEGFNAA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ QR RA+  S           + +  +    + F GY                     
Sbjct: 420 MQAQRERAQKASQ------FGVDYNAQVKATTKSVFDGY--------------------- 452

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
               +   + V  +  +G  VE   +GQ+  VV   TPFYAE+GGQ+GDTG  + +  R 
Sbjct: 453 --TEDKAQTTVVELFHEGTAVESLEAGQQGVVVLANTPFYAESGGQVGDTGVLLANQGRF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++TD Q   + I  HH   +   ++   ++   ID + R  +  NHSATHLLH AL  IL
Sbjct: 511 EVTDTQYIGKAI-AHHGQAD-CTIKLGDAVTAEIDSERRANIRRNHSATHLLHAALRDIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV Q GS +  + +RFD  H +P+T A++  +E  VN+ I +N+ + T++MN ++A  
Sbjct: 569 GDHVQQKGSLVEAERMRFDFAHFEPLTKAQITELERVVNEQIRKNVRLTTQVMNIDEAKK 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA AL G KY+D VRVV +     G  S  LCGGTHV++TG+I L  I  E+ I +G+R
Sbjct: 629 AGAMALFGEKYDDDVRVVRM-----GEFSMELCGGTHVAATGDIGLFRITHETGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+E +TG  A   +  Q   L  L +  K  +  ++G+V+++  +YR+L+    + + +L
Sbjct: 684 RLEVVTGAAAFEFMANQQAILNQLTADFKTDETGLLGKVDQLQSKYRELERKAEQLQQKL 743

Query: 782 NVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             +          ++     +   + + ++K L+ ++D L+ ++ SG+++L   ++  K 
Sbjct: 744 AQQAGGGLVQQAVEMNGHKVIVAQLEDTEAKALRGIVDDLKNQLGSGVVLLA-TAQGSKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S++  VT+DL     A DL   +A V+ GG GGGRP MAQ+GG N     +A+A   S+L
Sbjct: 803 SLIAGVTKDLTSIVKAGDLVNQAANVV-GGKGGGRPDMAQAGGSNPEHLSEALATATSWL 861

Query: 897 KK 898
           ++
Sbjct: 862 EQ 863


>gi|33602167|ref|NP_889727.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|41018190|sp|Q7WHL6|SYA_BORBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33576605|emb|CAE33683.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 874

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/912 (44%), Positives = 553/912 (60%), Gaps = 54/912 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+ 
Sbjct: 1   MKS-SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER
Sbjct: 180 EIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A+ + TG+K   +N  + +VI DH+R+ +FLI DGI+P
Sbjct: 240 IAAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL Q    + + LR
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   RG+  
Sbjct: 358 QEEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERGVE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F  A++ QR +ARA           K+   L  +   T+F GY+ L  S      
Sbjct: 417 VDMAGFEAAMQRQREQARAAGK-------FKMAEGLSYEGAETRFEGYESLELSGV---- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG
Sbjct: 466 ------------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL
Sbjct: 508 LLEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     +
Sbjct: 568 MHKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAK 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  +VS
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L  
Sbjct: 682 EGGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIVQVQEQLKALEK 741

Query: 771 QLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +L  A+ KL  +  +        ++  +  ++  I +VD K L+ ++D L+ +++  +++
Sbjct: 742 ELEQARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S++  VT DL  R  A DL    A  +GG GG GRP MA  GG +     
Sbjct: 802 LAAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKGG-GRPDMAMGGGTDLAALP 860

Query: 887 QAIAGVASFLKK 898
            A+A V  ++ +
Sbjct: 861 AAVASVQKWVDE 872


>gi|330863734|emb|CBX73834.1| alanyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 875

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  +VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + +L     A+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNNLIRVDSASQFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 463 -------------HVHQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G LR   S+   ID   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYGQAI-GHLGQLAHGTLRVNHSIDAQIDAARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++      +   +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  I+ + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG N     
Sbjct: 804 LATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTNVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|53729167|ref|ZP_00134001.2| COG0013: Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208134|ref|YP_001053359.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|205829968|sp|A3N018|SYA_ACTP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126096926|gb|ABN73754.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 874

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/912 (41%), Positives = 543/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ  W+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W KI G+  D IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RV+ DH+R+ S+LIADG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNK--SLRVVADHIRACSYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L T MG A   L Q +  I++T
Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + ++  L+G+VAFKLYDT+G PLD+  D+   R L
Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RA+A S           + ++ +  G T FIGYD L       
Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS------NFGTDYNNVIKVEGQTDFIGYDNLE------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + +  +   G+ V+   SG+   ++ DQT FYAE GGQ+GD
Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIQSGESAVIILDQTSFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G    +     + D QK  + +F H   +  G L     +  T+    R  ++ NHSAT
Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS ++ + LRFD +  + I+ ++L+ IE  VN  I +N+ V 
Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   GA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +
Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGM-----TEFSIELCGGTHVQRTGDIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE ++ AGIRR+EA+T + A   L  Q + L+  A FLK    ++V +++++ ++ ++ 
Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L  +         +KI  VN +   +  V+ K L++++D L+ +++S I+
Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  G   ++K ++++ VT+DL  + NA +L    A+ + GG GGGR  MA +GG      
Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859

Query: 886 DQAIAGVASFLK 897
           D A+     +++
Sbjct: 860 DNALKFAEEWIQ 871


>gi|186476371|ref|YP_001857841.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|205830006|sp|B2JK72|SYA_BURP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|184192830|gb|ACC70795.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 874

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 534/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +    NN  + +V+ DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETNIDDLSNN--SLKVVADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL  A+  +   LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAQMGGAYPELKDAEQRVTHVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+G L+ L     + L+G+VAFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEGALADLDSKGGKTLDGEVAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA           K+   L      T F GY+ +        
Sbjct: 419 -VDEPAFDEAMARQREQARAAGK-------FKMAQGLDYTGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E   GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------ARVTALYVDGASVNEVTKGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      IR  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASIRFGVVDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGGHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV+ TG+I L  IV
Sbjct: 629 RVMAYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+  + ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQELDARIHAAAAALKAQPSELTQRISMVQDQVKALE 742

Query: 772 LI--HAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D    +   ++ V  ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELASQAIDVSGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADTSKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|237809468|ref|YP_002893908.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|237501729|gb|ACQ94322.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 874

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 546/910 (60%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y   
Sbjct: 3   MTTSEIRTAFLEYFRSQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGGDIRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LTK   L 
Sbjct: 63  TTAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWDFLTKVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           Q +L +TVY  D+EA+ +W    G+SAD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 QEKLLVTVYATDDEAYGIWANEIGVSADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+R+IEIWN+VFMQF +Q       LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGADIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTLEPLPKPSVDTGMGIERV 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+FK LIQ + ++ G+    N   + RVI DH+RS SFLI+DG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFKTLIQNAAKIVGVTDLENK--SLRVIADHIRSCSFLISDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG T+     L+ AL   MG AYPEL   + ++E  L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDTFFYQLVGALVALMGEAYPELKSQQPVVERVLKL 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL LL+  L  LG    + G V FKLYDT+G P D+  D++  RG   I
Sbjct: 361 EEEQFVRTLDRGLSLLEEELVRLGDVREIPGSVVFKLYDTYGFPADLTADVVRDRGYT-I 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +F Q +E+QR RA+  S           +    +    + F GY+            
Sbjct: 420 DEAAFQQEMEKQRERAKDAS------HFAVDYNKQLKIEQTSDFCGYERT---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          ++ + AI    ++V     G +  +V + TPFYAE+GGQ+GD G 
Sbjct: 464 -------------IANTTITAIYLADQLVSTLKDGDQALIVLENTPFYAESGGQMGDAGL 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    +TD  K  + I VH   VE+G  +T  ++   +D   R   +++HSATHLL
Sbjct: 511 LRVGDALFAVTDTHKIGQAI-VHKGFVEQGSFKTGDTVEAIVDNTRRNATALHHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS + PD LRFD +H + I  A L+ IE +VN  I +N+ + T++
Sbjct: 570 HAALRNALGEHVAQKGSQVGPDRLRFDFSHFEAINPAALRQIEQSVNAEIRKNVLIDTQL 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA  SGA AL G KY D VRVV +     G  S+ LCGGTH   TG+I    I+SE
Sbjct: 630 MSLDDAKTSGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHAKHTGDIGFFKIISE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + + AG+RRIEA+ G+ A +H+    E+L   AS +K    +VV ++ ++ E  R L+  
Sbjct: 685 NGVAAGVRRIEAVAGEAALAHIHQLGEQLDEAASIVKADALSVVSKIRQMQERSRLLERE 744

Query: 774 HA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K KL     +    +I  +N    +   +  VD+K L++ MD L+ ++QS ++ML+
Sbjct: 745 IETLKAKLASQAGNDLLSQIMQINGQQVLVAQVEGVDAKSLRTTMDDLKNRLQS-VVMLL 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K S++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG +      A
Sbjct: 804 AAVNDGKVSLIAGVTADLTSKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDATALPGA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LKSVQSWLEE 872


>gi|205830265|sp|Q11IW3|SYA_MESSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 887

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/894 (52%), Positives = 622/894 (69%), Gaps = 37/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL+FF+KNGHE++ S  L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D +RL +TVY  D+EA   W+KI+GL  ++IIRI T+DNFW+M +TGPCGPCSEIFFD  
Sbjct: 121 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+EQ +  ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLFK LI A+E+  G++ EG    +++VI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+PAL  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL LL      +G+ + L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+  FN
Sbjct: 361 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WFS+K++ GAT F+GY+                  
Sbjct: 420 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      I+ A+V+ G +VE A  G++V VV +QTPFY E+GGQ+GDTG   G+G 
Sbjct: 463 ------EEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I + QKK EG+FVH   V++G +R    + L +D++ R ++  NHSATHLLH AL  
Sbjct: 517 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + PD LRFD +H KPI   EL+ IED  N+++ QN PVVTR+M  +DA
Sbjct: 577 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IA GA AL G KY D VRVVS+     G      +S  LCGGTHV++TG+I L++I+ E 
Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG  AR +L  Q+ +LK+ AS LKVS G+++ R+E + EE RKL+   
Sbjct: 697 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 756

Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++ + +L +   +         ++  V F+  ++  +  K+LK + D  +K + SG+++ 
Sbjct: 757 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           VG S+E KASV++ VT+DL  RF+AVDL R ++  +GG GGGGRP MAQ+GGP+
Sbjct: 817 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 870


>gi|85708967|ref|ZP_01040033.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85690501|gb|EAQ30504.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 887

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/910 (49%), Positives = 599/910 (65%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+FF    H  + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MTSTNDIRRSFLDFFASEDHVEVQSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPGPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILNAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LW+KISGL  ++IIRI T DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 APEKLTATVYHTDDEAFDLWRKISGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG PGS  E+G+R+IEIWNLVFMQF+Q     R  LP  SIDTGMGLER+A V+Q 
Sbjct: 181 EHIPGGPPGSPDEDGDRFIEIWNLVFMQFDQAADGTRRDLPSPSIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +T +   G N  +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASENLTEVPASGENTASHRVIADHLRSTSFLMADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L+PAL +EMG AYP L + + LIEE L  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVSEMGQAYPGLQRGQSLIEEVLLREETQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+GL LLD     + +   L+G+ AFKLYDT+G P D+ +D L ARG++ +D   F+
Sbjct: 361 KTLDKGLKLLDEATGSMSEGGELDGETAFKLYDTYGFPYDLTEDALRARGIS-VDRGGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  Q++ ARA   G G   +++IWF + E+ GAT+F GY    G              
Sbjct: 420 EAMARQKAAARAAWKGSGEAASDEIWFDIAEREGATEFTGYSTTSG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                       V A+V+ G  V+ A +G +V V+ +QTPFY E+GGQ GDTG      G
Sbjct: 466 ---------EGTVVALVKDGAEVDSASAGDEVVVLTNQTPFYGESGGQTGDTGTISTPTG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +   +TD  K    +  H A +  G ++   ++ L +D + R Q+  NHSATHL+H AL 
Sbjct: 517 LAADVTDTSKPLGRLHAHQARITAGKVKVGDNVQLDVDAERRTQIRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS ++ + LRFD +H KP+++ ++ +IED VN  I  N PV TR+M+ +D
Sbjct: 577 NQLGDHVTQKGSLVSQERLRFDFSHPKPLSAEDIVAIEDEVNAEILANEPVGTRLMSPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+ +GA AL G KY D VRV+S+    G    +S  LCGGTHVS+TG+I L  IVSE ++
Sbjct: 637 AVEAGALALFGEKYGDEVRVLSMGRSGGSGRNYSVELCGGTHVSATGDIGLFRIVSEGAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG  AR+ L+ ++E LKS+A  ++ +   V  RV  + +E ++L+   A+
Sbjct: 697 SSGVRRIEALTGDAARNWLVAREEALKSVAGAIRATPEEVPARVAALLDERKRLEKELAE 756

Query: 777 RKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            K  L +               ++A V F   ++  ++ KEL+ ++D  + ++ +G+  +
Sbjct: 757 AKKALALGGGGSGGGPAASADEQVAGVAFSGQVLEGLNPKELRPLLDEAKARLGTGVAAI 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V +  + KAS+   VT+DL D+F+AVDL R   + LGG GGGGRP MAQ GGP+G+KA +
Sbjct: 817 VAV-NDGKASIAAAVTDDLTDKFSAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGSKAAE 875

Query: 888 AIAGVASFLK 897
           AIA V S L+
Sbjct: 876 AIASVKSVLE 885


>gi|227329399|ref|ZP_03833423.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 875

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 550/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYARA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI A  +  G     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR  S G G       + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRAREAS-GFGVD-----YNSLIRVDENTPFCGYEKTQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AI   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQAKVIAIYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  + I  H   + RG LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQAI-GHVGKLTRGTLRVNDSVEANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       ++  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQFKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|307945634|ref|ZP_07660970.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771507|gb|EFO30732.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 888

 Score =  980 bits (2534), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/910 (52%), Positives = 629/910 (69%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F KN HE++ S  L+P NDPTLMF N+GM  FKNIFTG EK     
Sbjct: 1   MTGVNDIRSTFLDYFSKNSHEVVESGPLVPRNDPTLMFANAGMNQFKNIFTGLEKRECSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TV+ ED+EA  LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PADRLLVTVFAEDDEAAVLWKKIAGLSDDKIIRIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   + R  LP+ SIDTGMG+ER+AT+LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQLADK-RVDLPRPSIDTGMGIERLATILQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK LI ASE  TG++  G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFKALISASEHETGVEASGDALSSHRVIADHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  +PLM  L+P+L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELGRAEALISETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L +   L+G+ AFKLYDT+G PLD+ QD L  RG++ +D   F+
Sbjct: 360 KTLERGLGLLDTASGDLFEGGQLDGETAFKLYDTYGFPLDLTQDALRTRGIS-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE IWF+LK+K GAT F+GY+                  
Sbjct: 419 SAMERQKAEARAAWSGSGGAVTETIWFALKDKVGATDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +VK +V     V++  SGQ+  VV +QTPFY E+GGQ+GD G  IG+G+
Sbjct: 462 ------ETAEGVVKGLVADDAQVDKLNSGQEGFVVLNQTPFYGESGGQVGDAGLMIGEGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+ ++DVQKKA+G+FVH   VE G L  +  L L +D+  R  +  NHSATHL+H AL  
Sbjct: 516 RVTVSDVQKKADGLFVHAVKVEDGTLTLDQPLELKVDHARRTAIRSNHSATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS ++P+ LRFD +H KP++  EL   E   N+I+ QN PV TR+M  +DA
Sbjct: 576 VLGTHVAQKGSMVSPERLRFDFSHPKPLSDEELAVTEKFANEIVLQNAPVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY D VRVVS+       ++G  +S  LCGGTHV  TG+I L+ +VSE+
Sbjct: 636 IEAGAMALFGEKYGDEVRVVSMGTALHGEKEGKPYSLELCGGTHVKRTGDIGLVTLVSEA 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RR+EA+TG  AR++L  QD+++K +A+ LK    +V  RV ++ E+ RKL+   
Sbjct: 696 AVAAGVRRVEALTGSEARAYLDAQDKRVKEVAAILKSGMADVPARVAQLVEDRRKLEKEL 755

Query: 775 AKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K +L            +   I  V  M  ++  +++K+LK ++D  + +I SG+++L
Sbjct: 756 QEAKKKLAMGGGAGGDAGGAVKTIGSVQLMGRVVEGINAKDLKGMVDEAKTQIGSGVVVL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +   +  KAS++  VT+DL+++ +AVDL RL ++ LGG GGGGRP MAQ+GGP+G+KA+ 
Sbjct: 816 ISTGEGGKASIVTGVTKDLVEKVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDGSKAED 875

Query: 888 AIAGVASFLK 897
           AI  +   L+
Sbjct: 876 AIKAIEGHLE 885


>gi|238791374|ref|ZP_04635013.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238729507|gb|EEQ21022.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 875

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWNLVFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI+A  Q TG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIKAVAQATGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL Q + ++E  L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEHVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+     I         A+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGADYNNMIRVD-----SASQFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV +QTPFY E+GGQ+GD 
Sbjct: 463 -------------HVHQQATVTALFRNGEAVDEINAGEEAVVVLNQTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   + +G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYGQAI-GHLGQLTQGTLRVNHSIDAQVDVARRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLPV T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDTAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L  +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQTDLLADVAHLVKGDSHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++      +   I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+AGV +++
Sbjct: 862 SALAGVEAWV 871


>gi|251788614|ref|YP_003003335.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247537235|gb|ACT05856.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 875

 Score =  980 bits (2533), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 547/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSSEWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF  LI  + +V G     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYDIDLFSTLIAEAARVVGTDDLNNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGPLVDVMGSAAEELKRQQSLVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL+LLD  +  L K + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR  S G G+      + SL     +T F GY+          
Sbjct: 420 -VDEAGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDESTTFCGYERTE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQSTVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R  + D QK  + I  H   + +G+LR    +   +D+  R ++ +NHSATH
Sbjct: 510 GTLVSAAARFSVVDAQKYGQAI-GHVGSLVQGVLRVNDKVDAAVDHVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   +++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A A GA AL G KY+++VRV+S+     G  S  LCGGTH   TG+I L  IV
Sbjct: 629 DVMALDAARAKGAMALFGEKYDEQVRVLSM-----GDFSIELCGGTHARRTGDIGLFQIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A   L  Q + L  +   +K    N+  +V  + E  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGENAIVALHQQSDVLHEVTQLVKGDSNNLADKVRSLLERTRGLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESSSLSGKAKDINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  VT++L DR  A +L    A  + GG GGGRP MAQ+GG +     
Sbjct: 804 L-STVADGKVSLIAGVTKELTDRVKAGELVGFVANQV-GGKGGGRPDMAQAGGSDVGALP 861

Query: 887 QAIAGVASFL 896
            A+  + +++
Sbjct: 862 SALTSIEAWV 871


>gi|304310760|ref|YP_003810358.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301796493|emb|CBL44701.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 876

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 549/910 (60%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F  NGH+++PSSSLIP NDPTL+FTN+GMV FK++F G++   Y+  
Sbjct: 1   MKTSEIRKAFLDYFAVNGHQIVPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDARDYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT  +   
Sbjct: 61  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIRFAWEFLTGERWLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W +  G+  D+++RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYATDDEAYDIWTQQVGVPVDRVVRIGDNKGAPYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF++        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEEIFGGPPGSKDEDGDRYIEIWNIVFMQFDRHPDGTLNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF HL+ A  +VTG K   +   + RV+ DH+R+ +FLIADG++
Sbjct: 241 RIAAVLQHVHSNYEIDLFAHLLDAVAKVTGAKDLQDK--SLRVVADHIRACAFLIADGVV 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRIMRRA+ +   LG  EP    L+ AL  EMG AYPEL + +  IE+T+
Sbjct: 299 PSNEGRGYVLRRIMRRAIRHGNKLGAQEPFFYKLVAALAAEMGDAYPELRKLQAQIEKTI 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F +TLD+GL +L+  L+     E + GD+ FKLYDT+G P D+  DI   R L+
Sbjct: 359 LQEEEQFARTLDQGLRILEQELTAHQLTE-IPGDLVFKLYDTYGFPADLTADIARERDLS 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+  F Q +  Q+ R++  S   G+      +    +    T F GY    G      
Sbjct: 418 -LDMGGFEQRMAAQKERSQKSSQFAGN------YHDALDISTQTVFSGYSDTSG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V+A+  QG+ V    +GQ   VV DQTPFYAE+GGQ+GD 
Sbjct: 465 -----------------QAKVEALFFQGKPVSSVSAGQDAIVVLDQTPFYAESGGQVGDV 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G   ++ D  K+  G  +HH ++  G +     +   ++ + R+ + +NHSATH
Sbjct: 508 GLIRKAGACFEVADTHKQ-GGAHLHHGVLVSGQISVGDVVEAEVNAELRQAIRLNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +T   LRFD ++   ++ AEL+ IE  VND +  N  ++T
Sbjct: 567 LLHAALRQVLGEHVHQKGSMVTAGRLRFDFSNPSALSPAELEQIERIVNDQVRGNSEIIT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  + A A GA AL G KY D VRV+++  +     S  LCGGTH   TG+I L  ++
Sbjct: 627 EIMPIDQARAKGAMALFGEKYEDEVRVLTMGTDC---FSVELCGGTHARRTGDIGLFQLI 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRIEA+TG  A + +  + ++L +++S +K +  NVVG+V  + E  R+L+
Sbjct: 684 SEGGVAAGVRRIEAVTGAAALALITNRHQQLVAISSAVKGNDENVVGKVTALVERVRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               K+  Q              ++A V  ++ ++   D+K L+ + D L+ K+   I++
Sbjct: 744 KELEKQSAQRASRAGEEIISQSFELAGVKVLAAVLENQDTKALREMCDKLRDKLGDAIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G S+E K +++  V++ L  +  A DL    A  + GG GGGRP MA +GG       
Sbjct: 804 L-GASQEGKVNLVAGVSKTLSSKVKAGDLVNHVASQV-GGKGGGRPDMATAGGSQPENLG 861

Query: 887 QAIAGVASFL 896
            AIA V  +L
Sbjct: 862 LAIASVRDWL 871


>gi|117923331|ref|YP_863948.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|205830136|sp|A0L3J9|SYA_MAGSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117607087|gb|ABK42542.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1]
          Length = 878

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/908 (43%), Positives = 562/908 (61%), Gaps = 44/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  F+ FFQ++GH  + SSSL+P NDPTL+FTN+GMV FK++F G+E+  Y   
Sbjct: 1   MNGNEIRKRFVAFFQQHGHTHVESSSLVPRNDPTLLFTNAGMVQFKSLFLGEERRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+L W  +T++  +D
Sbjct: 61  VSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIRLGWRFVTEDLGID 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL +TVY ED+EA+ +W +  GL ADK+IRI T DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 121 AQRLLVTVYSEDDEAYAIWTQQIGLPADKVIRIPTTDNFWSMGDTGPCGPCSEIFYDYGD 180

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+R++EIWNLVFMQ+++ +      LPK SIDTG GLER+A+VLQ K
Sbjct: 181 TVAGGPPGSEDEDGDRFVEIWNLVFMQYDRSSDGTLTPLPKPSIDTGAGLERLASVLQGK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           TNNYD DLF+ LI+A+  + G+         +V+ RVI DH+RS SFLIADG+LP+NEGR
Sbjct: 241 TNNYDTDLFQPLIKAAAALAGVDDTTCSAEQLVSLRVIADHIRSVSFLIADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRR M + RLLG  +P M  L+  L   MG  YPEL   +  +   + +E++R
Sbjct: 301 GYVLRRIMRRGMRHGRLLGLEQPFMHKLVETLGALMGDTYPELTAQRKTLAMVIETEEKR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL  GL  L+  ++ L   ++L+G   F LYDT G PLD+  DIL  R + G+D   
Sbjct: 361 FAATLGTGLKHLEEAVAGLRMGDVLDGKTLFTLYDTFGFPLDLTADILRDREI-GVDQEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  ++EQR RARA   G G  +   ++  L E+ GA++F+GY                 
Sbjct: 420 FSACMKEQRERARAAWSGSGEASLGALYHPLLERVGASEFLGY----------------- 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IG 536
                 +    S+ V A+++ G  VE   +G +  VV +QTPFY E+GGQ+GD G   + 
Sbjct: 463 ------VHESASASVVALIKNGAEVESLTAGDEGSVVCNQTPFYGESGGQVGDRGVIQLA 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G R  +TD QK    + VHH  +  G +       L +D   R+ + ++HSATHL+HHA
Sbjct: 517 NGARFTVTDTQKPLPDLIVHHGKMVTGTVHLGDHAELQVDGATRQAIRLHHSATHLMHHA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS ++ + LR D +H + ++  EL+++ED VN  I  N+   T +M  
Sbjct: 577 LRAVLGEHVKQAGSHVSAERLRLDFSHFQGMSEEELRAVEDRVNGAILSNVSQETAVMTP 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+A+GA AL G KY D VRVV +        S  LCGGTHVS +G++ + +I+SES++
Sbjct: 637 QEAVAAGAMALFGEKYGDEVRVVRIG------DSMELCGGTHVSRSGDMGIFHILSESAV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RR+EA+ G RAR+   G  E LK+ A+ LK     +   +E +  + ++L+    K
Sbjct: 691 AAGVRRLEAVCGGRARAIFRGDQEALKAAAALLKTQPNKLAEGIERLLGKQKELEKSLEK 750

Query: 777 RKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +       VE L     ++  +  ++  +  VD K L+ ++D ++ K+ SG+I+L    
Sbjct: 751 LQSAQAGGMVEALLEQAVEVGGIKLLAVEVKGVDGKALREMVDQVKDKLGSGVILLAL-- 808

Query: 832 KEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K S++  VT+DL   R  A DL   +A ++ GG GGGRP MAQ GG         + 
Sbjct: 809 GGDKVSLVAGVTKDLAGKRVKAGDLMAFAAAMV-GGKGGGRPDMAQGGGTEVAAIPTMLT 867

Query: 891 GVASFLKK 898
            +  +L++
Sbjct: 868 AIPGWLQE 875


>gi|238786914|ref|ZP_04630715.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238725282|gb|EEQ16921.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 875

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 555/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGAAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF++LI A   VTG     +   + RVI DH+R+ +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRNLISAVADVTGATDLSSK--SLRVIADHIRACAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELDKLTGD-TLDGETAFRLYDTYGFPIDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + +L     A+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNNLIRVDSASQFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GD 
Sbjct: 463 -------------HVHQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYGQAI-GHLGQLTHGTLRVNHSVDAQVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDIVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E A   GA AL G KY+D+VRV+++     G  S+ LCGG H + TG+I L  I+
Sbjct: 629 EVMELEAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L  +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLADVAHLVKGDTNNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++      +   +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSNAKLVKGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTSKVKAGELIADIAQQV-GGKGGGRPDMAQAGGSDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 SALASVEAWVE 872


>gi|33597425|ref|NP_885068.1| alanyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|41018188|sp|Q7W6N4|SYA_BORPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33573852|emb|CAE38162.1| alanyl-tRNA synthetase [Bordetella parapertussis]
          Length = 874

 Score =  979 bits (2532), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/912 (44%), Positives = 553/912 (60%), Gaps = 54/912 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+ 
Sbjct: 1   MKS-SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER
Sbjct: 180 EIFYDHGPEIWGGPPGSLEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A+ + TG+K   +N  + +VI DH+R+ +FLI DGI+P
Sbjct: 240 IAAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+P    L+P L  EMG AYPEL Q    + + LR
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++RFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   RG+  
Sbjct: 358 QEEKRFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERGVE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F  A++ QR +ARA           K+   L  +   T+F GY+ L  S      
Sbjct: 417 VDMAGFEAAMQRQREQARAAGK-------FKMAEGLSYEGAETRFEGYESLELSGV---- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG
Sbjct: 466 ------------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL
Sbjct: 508 LLEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     +
Sbjct: 568 MHKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAK 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  +VS
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L  
Sbjct: 682 EGGVAAGVRRIEAITGDNALAWVQDQNVLLQRAAGVLRAPAHELPERIAQVQEQLKALEK 741

Query: 771 QLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +L  A+ KL  +  +        ++  +  ++  I +VD K L+ ++D L+ +++  +++
Sbjct: 742 ELEQARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S++  VT DL  R  A DL    A  +GG GG GRP MA  GG +     
Sbjct: 802 LAAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKGG-GRPDMAMGGGTDLAALP 860

Query: 887 QAIAGVASFLKK 898
            A+A V  ++ +
Sbjct: 861 AAVASVQKWVDE 872


>gi|329296669|ref|ZP_08254005.1| alanyl-tRNA synthetase [Plautia stali symbiont]
          Length = 875

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 550/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GMV FK++F GQ+K  Y   
Sbjct: 3   KSNAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMVQFKDVFLGQDKRDYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYAWELLTGEQWFK 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFEIWANDIGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY IDLF  LI A  QVTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVYSNYKIDLFAKLINAVAQVTGATDLNNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  +L + +  +E  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEDLKRQQKHVENAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L+ L K + L+G+  F+LYDT G P D+  D+   R L 
Sbjct: 361 KNEEEQFAKTLERGLALLDDELAKL-KGDTLDGETVFRLYDTFGFPADLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F  A+E+QR RAR  S G G+     I F        TQF GYD L        
Sbjct: 420 -IDEAGFEAAMEQQRQRAREAS-GFGTDYNTVIRFD-----TPTQFKGYDHL-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           + + V+A+   G+ VE+  +GQ   V+ DQTPFY E+GGQ+GDT
Sbjct: 465 ---------------SLEATVQALFVDGQQVEQVAAGQDAVVILDQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK  +  F H   + +G LR    L   +D   R ++ +NHSATH
Sbjct: 510 GVLTGQNAEFSVQDTQKYGKA-FGHIGKLRQGQLRVGDRLQAQVDEVRRSRIILNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS      LRFD +H + +   +++++ED VN  I +NLP+ T
Sbjct: 569 LMHEALRKVLGDHVGQKGSLNNDKYLRFDFSHGEAMKPQQIRAVEDIVNAQIRRNLPITT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E+A A GA AL G KY+ RVRVVS+     G +S  LCGGTH + TG+I L  I 
Sbjct: 629 NVMDLEEAKALGATALFGEKYDQRVRVVSM-----GEYSIELCGGTHAARTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E+   AGIRRIEA+TG+ A + L  Q ++L  +A  +K +   +  +V  + E  R L+
Sbjct: 684 GEAGTAAGIRRIEAVTGEAAIAQLHAQSDQLTDIAQVVKANHSYLNEKVRGLVENVRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++         ++     +   +S V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLRDQQAAQESASLSSKAVEVKGAKLLVSELSNVEPKMLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A +L    A  + GG GGGRP +AQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGELIGELAAQV-GGKGGGRPDLAQAGGTDAQALS 861

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 862 GALVSVPEWV 871


>gi|161525078|ref|YP_001580090.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350179|ref|YP_001945807.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|205830000|sp|A9AC16|SYA_BURM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160342507|gb|ABX15593.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334201|dbj|BAG43271.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 874

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/911 (42%), Positives = 542/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEVSDLNNN--SLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742

Query: 772 LIHA--KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|227114946|ref|ZP_03828602.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 875

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 551/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI+A  +  G     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIEAVAKAVGTTDLTNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR  S G G       + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRAREAS-GFGVD-----YNSLIRVDENTPFCGYEKTQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AI   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQAKVIAIYHNGTAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  + I  H   + +G LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQAI-GHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       ++  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|254474615|ref|ZP_05088001.1| alanyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214028858|gb|EEB69693.1| alanyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 883

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/908 (48%), Positives = 584/908 (64%), Gaps = 39/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVSSSPLVPRNDPTLMFTNSGMVQFKNLFTGLETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFLI+DG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLISDGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQSMIEETLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELADLDEGAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWAGSGESADSTIWFDVADQAGTTDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G  V EA +G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 462 ------EAAEGQVMALVVDGAQVSEAGAGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++++D  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVSDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHARRSAIRSNHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS    D LRFD +H+K ++  E++++E  VN  I QN  V TRIM  +DA
Sbjct: 575 VLGEHVAQRGSLNADDRLRFDFSHNKALSLDEIRTVEQQVNHFIRQNSTVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+        +DG   S  LCGGTHV  TG+I    ++ +
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKAPTGKGQDGQTWSLELCGGTHVKQTGDIGTFVVLGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  +L GQD  L   A  LK   G+V  R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFQYLTGQDNLLAQAALELKAQPGDVPERIKALLDERKALQNE 754

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +       +    I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGGVETKDIGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + A  A
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGAQDA 873

Query: 889 IAGVASFL 896
           +    +FL
Sbjct: 874 LKAAEAFL 881


>gi|205830250|sp|Q07R87|SYA_RHOP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 891

 Score =  979 bits (2531), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/901 (50%), Positives = 609/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 1   MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L
Sbjct: 61  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A   +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG++ +DI SF 
Sbjct: 361 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGIS-VDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA   G G    E +WF L+EK GAT+F+GY+                  
Sbjct: 420 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+V+ G++V++  +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 463 ------ETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV +              S  LCGGTHV  TG+I L+ +  E
Sbjct: 637 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG++AR          K  A+ L+ S  ++  R+  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 756

Query: 774 HAKRKLQLNVEDL----------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            A+ + +L +                ++  V  M+  +  V+ K+LKS++D  +K++ SG
Sbjct: 757 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I L+  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 817 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876

Query: 884 K 884
           K
Sbjct: 877 K 877


>gi|187924800|ref|YP_001896442.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|205830007|sp|B2SZN0|SYA_BURPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187715994|gb|ACD17218.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 874

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+ GPCGPCSE
Sbjct: 121 KDKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADVGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFSRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAGRETGVSDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  +MG AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGDAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKTLDGELAFKLHDTYGFPLDLTADVCREREVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA           K+   L+     T F GY+ +        
Sbjct: 419 -VDEAAFDEAMARQREQARAAGK-------FKMAQGLEYSGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+E   G++  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVIALYVDGASVKEVRDGRQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +R  ++D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPFDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A   +   D ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             ++  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|153950576|ref|YP_001402195.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|205830292|sp|A7FLR7|SYA_YERP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152962071|gb|ABS49532.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
          Length = 875

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYGQAI-GHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTT-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|51595175|ref|YP_069366.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|170025588|ref|YP_001722093.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186894190|ref|YP_001871302.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|59798514|sp|Q66E68|SYA_YERPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830293|sp|B2K5X9|SYA_YERPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830296|sp|B1JJA0|SYA_YERPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51588457|emb|CAH20065.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|169752122|gb|ACA69640.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186697216|gb|ACC87845.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 875

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYGQAI-GHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|284007755|emb|CBA73582.1| alanyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 899

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/910 (42%), Positives = 547/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GHE++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 26  KSTAEIRQAFLDFFHTKGHEIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 85

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + F+
Sbjct: 86  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEQWFN 145

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  DE A+K+W++  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 146 LPKERLWVTVYHTDEAAYKIWQQEIGIPIERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 205

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LP  S+DTGMGLE
Sbjct: 206 TEIFYDHGEHILGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGSLKALPTPSVDTGMGLE 265

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI +  +   +    N   + RVI DH+RSS+FLI DG+ 
Sbjct: 266 RIAAVLQHVNSNYEIDLFRQLIASIAKAVALSDLNNK--SLRVIADHIRSSAFLIGDGVF 323

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ +  +LG  E     L+  L   MG    EL   +  IE+TL
Sbjct: 324 PANEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVAPLIQVMGDTADELKSHQATIEKTL 383

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL RGL LLD  L+ L + + L G++AF+LYDT+G P D+  D+   R + 
Sbjct: 384 KNEEEQFARTLARGLQLLDDELAQL-QGDTLAGEIAFRLYDTYGFPFDLTADVCRERNIK 442

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN A+E+QR RAR  S           +  + +    + F GY+          
Sbjct: 443 -VDEAGFNAAMEQQRYRARESS------GFATDYNDVIKVDSHSDFSGYE---------- 485

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI   G+ V     G++  ++ D+T FYAE+GGQ+GD+
Sbjct: 486 -------------NNNQQATVIAIFHHGKSVNVLNQGEEGIIILDKTSFYAESGGQVGDS 532

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       +  ++D QK A+ I  H   V  G +    S+   ID + R  + +NHSATH
Sbjct: 533 GILSNSHGQFAVSDTQKYAQAI-GHLGKVITGSITVNNSVEAKIDIERRNAIRLNHSATH 591

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS +    LRFD +H   +T  +++ IED VN  I +N P++T
Sbjct: 592 LLHAALRDVLGEHVSQKGSLVNEKYLRFDFSHFAAMTPKQIRQIEDIVNCQIRKNDPIIT 651

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ + A   GA AL G KY+ +VRV+S+     G  S  LCGGTH + TG+I L  I 
Sbjct: 652 TLMDLDAAKEKGAMALFGEKYDAKVRVLSI-----GDFSIELCGGTHANRTGDIGLFRIK 706

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEAITGQ A   L  Q + L  +   +K    +++ +++   ++ + L+
Sbjct: 707 SESGTAAGIRRIEAITGQAAIDDLHLQSQLLAEIGQLMKGDADSLMEKIKATLDKVKLLE 766

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         KI  VN +   ++  + K+L+ ++D L+ +++S II+
Sbjct: 767 RSLNQLKGQQAAQESVSLSQKVKKINGVNLLVTQLNNTEPKQLRIIVDDLKNQLKSAIIV 826

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  IS + K S+++ VT DL  +  A DL    A+ + GG GGGRP MAQ+GG N     
Sbjct: 827 LSTISND-KVSLIVGVTNDLTAKIKAGDLISFVAQQV-GGKGGGRPDMAQAGGSNITALP 884

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 885 AALASVEEWV 894


>gi|115523616|ref|YP_780527.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115517563|gb|ABJ05547.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
          Length = 893

 Score =  978 bits (2529), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/901 (50%), Positives = 609/901 (67%), Gaps = 41/901 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK     
Sbjct: 3   MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L
Sbjct: 63  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EAF LWKKI+GL   KIIRI T+DNFW M +TGPCGPCSEIFFD G
Sbjct: 123 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 182

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 183 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+IDLF+ LI+A   +TG   +G    + RVI DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 243 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM + +LLG  EPLM  L+ AL  EMG AYPEL++A+ LIEETLR E+ RF 
Sbjct: 303 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD   + L + ++ +G+ AF LYDT+G PLD+ QD L ARG++ +DI SF 
Sbjct: 363 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGIS-VDIASFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ ARA   G G    E +WF L+EK GAT+F+GY+                  
Sbjct: 422 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYET----------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+V+ G++V++  +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 465 ------ETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKKA  +FVH   VE G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 519 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 578

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPI++ EL+ +ED  N+++ +N  V TR+M  +DA
Sbjct: 579 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 638

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVV +              S  LCGGTHV  TG+I L+ +  E
Sbjct: 639 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 698

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG++AR          K  A+ L+ S  ++  R+  + +E +KL+  
Sbjct: 699 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 758

Query: 774 HAKRKLQLNVEDL----------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            A+ + +L +                ++  V  M+  +  V+ K+LKS++D  +K++ SG
Sbjct: 759 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 818

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I L+  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G 
Sbjct: 819 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 878

Query: 884 K 884
           K
Sbjct: 879 K 879


>gi|192292738|ref|YP_001993343.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286487|gb|ACF02868.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 889

 Score =  978 bits (2529), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/899 (51%), Positives = 610/899 (67%), Gaps = 39/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+  +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  V+   +G+   ++ +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 463 ------ETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ AG+RRIEA+TG+ AR +        K  AS L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756

Query: 774 --HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              A++KL +      +        I  +  M+  +  ++ K+LK ++D  +K++ SG+I
Sbjct: 757 LSEARKKLAMGGSASGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875


>gi|319408736|emb|CBI82393.1| Alanyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 889

 Score =  978 bits (2529), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/911 (51%), Positives = 634/911 (69%), Gaps = 38/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+ IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+     
Sbjct: 1   MNSVNKIRSTFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQLSCSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF  YFKE AI  AW+LLTKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFFAWNLLTKEFCL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+ A +LW+KISGL  +KIIRI TNDNFW M +TGPCGPCSEIF+D G
Sbjct: 121 SKDKLLVTVYHSDDVAAQLWRKISGLPDEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ +K +R  LP  SIDTGMGLER+A VLQ 
Sbjct: 181 DKIFGGPPGSADEDGDRFVEIWNLVFMQYEQVSKDKRIELPHPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF  LI+ S+++TG++  G+ +V+HRVI DHLRSS+FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFSALIRESQRITGVEATGDFVVSHRVIADHLRSSAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM YA  L   E LM  L+PAL  EMG AYPEL++A+ LI E L+ E+ RF 
Sbjct: 301 VLRRIMRRAMRYAHFLDAKELLMWRLVPALIREMGQAYPELVRAESLISEILKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LL+    HL + +  NG+VAFKLYDT+G PLD+ QD L  RG++ +D+ +FN
Sbjct: 361 KTLERGLRLLNEESVHLKEGDCFNGEVAFKLYDTYGFPLDLTQDALRHRGIS-VDVNAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E Q++ ARA+  G G   TE +WFS++++ G T+F+GY+                  
Sbjct: 420 KAMEHQKAEARANWSGSGESVTETVWFSVRDQVGTTEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      ++ A++  GEIV++  SGQK  +V +QTPFY E+GGQ+GD+G   G+  
Sbjct: 463 ------EKAEGVITALICDGEIVDKVSSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QKKA+G+FVH   V+ G  +T   + L +D   RR++  NHSATH+LH AL  
Sbjct: 517 IFEVHDTQKKAKGVFVHIGEVKSGQAKTHDCVELAVDCVRRRKIRANHSATHILHKALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS ++PD LRFD +HS  I   +LK IED  N+I+ QN  V+TR+M  +DA
Sbjct: 577 TLGDHVVQKGSFVSPDRLRFDFSHSGQILLKDLKKIEDLANEIVLQNSEVITRLMTVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I+ GA AL G KY+D VRVVS+     E  +    S  LCGGTHV  TGEI L++IVS S
Sbjct: 637 ISEGAIALFGEKYSDEVRVVSMGKRHEEIGEKDYWSIELCGGTHVHRTGEIGLIHIVSVS 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKL--Q 771
           S+ AG+RRIEA+TG  AR +   Q ++L  +A+ LK+    N+   ++ + ++YR++  +
Sbjct: 697 SVAAGVRRIEALTGTAARLYFRNQYKQLYDIAALLKMPSVFNLSKNIQGLLDDYRRIGKE 756

Query: 772 LIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L + + K+  N      +K     I  ++FM  +I  +  K+LK+++D+ +K+I SG++ 
Sbjct: 757 LSNLRTKIAFNDGATKDNKADIKIINGISFMGRVIQNISPKDLKTLVDSGKKQIGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +GIS+  K SV++ VT+DL+DR +AVDL R+ +  LGG GGGGRP MAQ+GGP G+KA 
Sbjct: 817 FIGISENGKGSVVVGVTDDLVDRLSAVDLVRIVSDTLGGKGGGGRPDMAQAGGPQGDKAY 876

Query: 887 QAIAGVASFLK 897
            AIA +  FL+
Sbjct: 877 DAIAALEVFLE 887


>gi|94498454|ref|ZP_01305011.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94422102|gb|EAT07146.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 884

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/904 (48%), Positives = 598/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y+ 
Sbjct: 1   MTSTNDIRRSFLDYFGGNGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL  TVY  D+EAF LWKKI+GL  ++IIRI T DNFW+M ++GPCGPCSEIF+D G
Sbjct: 121 PADRLTATVYHTDDEAFDLWKKIAGLPEERIIRIATKDNFWAMGDSGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ+  +    LP+ SIDTGMGLER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPRPSIDTGMGLERVAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            T+NYD D FK LI  S  ++    +G +  +HRVI DHLRS+ FLIADG+LPANEGRGY
Sbjct: 241 VTDNYDTDTFKALIAESGALSRTATDGAHKASHRVIADHLRSTGFLIADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  EPLM  L+ +L +EMG AYPEL++A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMYRLVSSLVSEMGGAYPELVRAQPLIEETLLREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+ GL LLD     L +   L G+ AFKLYDT+G P D+ +D L +RGL  +D   F+
Sbjct: 361 KTLENGLKLLDEATGDLAEGGTLAGETAFKLYDTYGFPYDLTEDALRSRGLT-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++ ARA   G G   +++IWF + EK G T+FIGY   +G              
Sbjct: 420 AAMAEQKAAARAAWKGSGEKASDEIWFDIAEKAGNTEFIGYATTQG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AIV+ G   + A +G  V +V +QTPFY E+GGQ+GD G     G 
Sbjct: 466 ---------EGEVLAIVKDGVNFDSAAAGDTVTIVTNQTPFYGESGGQMGDAGRITTQGG 516

Query: 540 RLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  + D  K    +  HHA +E G ++   ++ L++D   R ++  NHSATHLLH AL 
Sbjct: 517 FVALVDDTAKPLGRVHAHHATIEAGSIKVGDTVHLSVDVDRRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS +  D LRFD +H + +T A++ +IE +VN  +  N  V TR+M  +D
Sbjct: 577 KELGAHVTQKGSLVAADRLRFDFSHPEALTHAQIAAIEADVNAQVRHNEEVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A+GA AL G KY D VRV+S+   D   +S  LCGGTHV +TG+I L  IVSES++ +
Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRGDDAHYSVELCGGTHVRATGDIALFKIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L+ +D+KL+  A+ LK +  +V  R+  + E+ RKL+   A+ K
Sbjct: 697 GVRRIEALTGEAARLWLVERDDKLRQTAAALKTTPEDVPTRIAALVEQSRKLERELAEAK 756

Query: 779 LQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L        +     KI +++F+  +I  +D KEL+ ++D  +  + SG+  ++ +  
Sbjct: 757 KALALGGGSAAQTAGPEKIGNIDFLGQVIEGLDPKELRGIVDQNKATLGSGVSAVLAVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +AS+ + VT+DL  + +AVDL R   + LGG GGGGRP MAQ GGP+G+KA  A+  V
Sbjct: 816 DGRASIAVGVTDDLKGQISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKATAALDAV 875

Query: 893 ASFL 896
            + L
Sbjct: 876 KTAL 879


>gi|221214968|ref|ZP_03587936.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165195|gb|EED97673.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 874

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/911 (42%), Positives = 542/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARVTEVGDLNNN--SLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742

Query: 772 LIHA--KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|157374457|ref|YP_001473057.1| alanine--tRNA ligase [Shewanella sediminis HAW-EB3]
 gi|205830208|sp|A8FSV6|SYA_SHESH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157316831|gb|ABV35929.1| Alanine--tRNA ligase [Shewanella sediminis HAW-EB3]
          Length = 874

 Score =  978 bits (2528), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/909 (41%), Positives = 550/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWNFLTQELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EA+ +W K  G+ A+ +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAYDIWTKEIGVPAENLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG   E+G+R+IEIWN+VFMQ+ +Q+  E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +    N   + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILSVTDLENK--SLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG ++     L+P L   MG A   L+  + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGASDSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L K ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNAL-KGDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  E  +    +    T F GY  L           
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GQFETDYNDSLKIDELTHFSGYTEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            + AI   GE V    +G +  +V D TPFY E+GGQ GD G  
Sbjct: 463 ------------TAPGKITAIYMAGESVNSLSAGDEAVIVLDSTPFYGESGGQCGDRGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              GI   + D QK  + +  H   +  G L    SL   +D + R +  +NHS THLLH
Sbjct: 511 SAKGIEFDVKDTQKYGQAV-GHQGALTSGTLSVGDSLEANVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS +  + LRFD +H + +   ELK++ED VN  I +N  +   +M
Sbjct: 570 AALRQLLGTHVTQKGSLVDSERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DMDQAKEKGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++ GQ  +L   A+ LK    +VV +++   +  + L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAGQKAELDQAAALLKADSASVVSKLKAQLDRTKLLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++  VN +   +  V++  L+ + D L++K+ SGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQQVNGVNVLVKKLDGVEAGALRGLQDELKQKLGSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVASIASQV-GGKGGGRPDMAQAGGSQPENLDSAL 862

Query: 890 AGVASFLKK 898
             V  +L +
Sbjct: 863 EQVIPWLTE 871


>gi|311278355|ref|YP_003940586.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308747550|gb|ADO47302.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 875

 Score =  978 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/910 (44%), Positives = 560/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKYAWELLTGDNWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVEVMGSAGDDLKRQQAQVEQIL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V    +GQ   V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFVDGKAVNSINAGQDAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFGFAVSDTQKYGQAI-GHLGKLSNGSLKVGDAVQADVDEVRRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NLPV T
Sbjct: 569 LMHAALRDVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  EDA A GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 HVMELEDAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  + + L  +A  LK    N+  +V  + E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAESDLLSDVAQLLKGDSHNLADKVRTVLERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESASLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|50122289|ref|YP_051456.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|59798525|sp|Q6D1T0|SYA_ERWCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49612815|emb|CAG76265.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 875

 Score =  978 bits (2527), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 550/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYGIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI A  +  G     N   + RVI DH+RS +FLI+DG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNK--SLRVIADHIRSCAFLISDGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAEELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR  S G G       + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRARDAS-GFGVD-----YNSLIRVDENTPFCGYEKTQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQAKVIALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  + I  H   + +G+LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQAI-GHVGKLTQGMLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGVHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+S+     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLSM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRSRALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       +I  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKATEINGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTAAEGRVSLISGVTKDLTDRVKAGELVGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|253689580|ref|YP_003018770.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756158|gb|ACT14234.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 875

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 548/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI+A     G     N   + RVI DH+RS +FLIADG+ 
Sbjct: 243 RISAVLQHVNSNYDIDLFKTLIEAVANAVGTTDLTNK--SLRVIADHIRSCAFLIADGVT 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAAELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F +TL+RGL LLD  + +L K + L+G+ AF+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR  S G G       + SL      T F GY+  +       
Sbjct: 420 -VDEEGFEAAMTAQRQRAREAS-GFGVD-----YNSLIRVDENTPFCGYEKTQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +G +  V+ ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQAKVIALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  + I  H   + +G LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQAI-GHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH S TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       +++ V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVSGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-GTVAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|322831421|ref|YP_004211448.1| alanyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321166622|gb|ADW72321.1| alanyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 875

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/911 (43%), Positives = 550/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHNIVSSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRDYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFEIWEKEVGVPKERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  V+Q   +NYDIDLF+ LI A  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVMQHVNSNYDIDLFQKLIAAVAEVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAQDTFFYKLVAPLIEVMGPAATELKEQQAMVEQLL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L K + L+G++AF+LYDT G PLD+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAAL-KGDTLDGEIAFRLYDTFGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A++ QR RAR  S           + S+    G TQF GY+ L+       
Sbjct: 420 -VDEAGFEKAMDVQRRRARESS------GFSADYNSMVRVDGVTQFSGYEHLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+   G+ V +  +G    VV D TPFY E+GGQ+GD 
Sbjct: 466 ----------------RHSKVVALFVDGQPVNDIQAGVNAIVVLDDTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          ++D QK  + I  H   +  G L    S+   +D   R ++ +NHSATH
Sbjct: 510 GILKTTTGVFSVSDTQKYGKAI-GHQGALSAGKLSIGDSVEAEVDVARRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   E++ +ED VN  I +NLP+ T
Sbjct: 569 LLHAALRQVLGKHVAQKGSLVNDNYLRFDFSHFEAMKPEEIRQVEDLVNAQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ ++A   GA AL G KY D VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 629 TIMDLDEAKEKGAMALFGEKYEDSVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIQ 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIE ITG+ A + L  Q + L+ +A  +K    ++  ++  + E  R L+
Sbjct: 684 SESGTAAGVRRIEGITGENAINALHQQSDLLQDVAHLVKGDVNSITDKIRSLIERSRTLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +      V+ K L++++D L+ ++ S II+
Sbjct: 744 KELQQVKGQQAAQESASLSSQAKEVKGVKLLVRQFDNVEPKMLRTMVDDLKNQLGSVIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  I+ + K S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATIA-DDKVSLIAGVTKDLTDRVKAGELIASVAQQV-GGKGGGRPDMAQAGGSDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 AALATVEAWVE 872


>gi|221202097|ref|ZP_03575133.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204772|ref|ZP_03577789.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175629|gb|EEE08059.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221178180|gb|EEE10591.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 874

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/911 (42%), Positives = 542/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G+  ++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIEAAARVTEVGDLNNN--SLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKAAQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 509 GVLANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHVS TG+I L  IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVSRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   D ++   A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLE 742

Query: 772 LIHA--KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|114562241|ref|YP_749754.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122300463|sp|Q085Z9|SYA_SHEFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114333534|gb|ABI70916.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 874

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/911 (42%), Positives = 549/911 (60%), Gaps = 54/911 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R+ FL++F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 2   FQTTAELRSAFLKYFEDNGHQVVDSSSLVPTNDPTLLFTNAGMNQFKDVFLGMDKRNYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 62  ATTSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTETLKL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RL +T+Y+ D+EA+ LW +  G+ A+ +IRI  N       DNFW M +TGPCGPCS
Sbjct: 122 PKERLCVTIYETDDEAYDLWTQKIGVPAENMIRIGDNKGGAFASDNFWQMGDTGPCGPCS 181

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG   E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER
Sbjct: 182 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMLPLPKPSVDTGMGIER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+FK LI  + ++ G+    N   + RVI DH+RS +FLIADG++P
Sbjct: 242 IAAIMQGVHSNYEIDIFKQLIAKTAEIIGVTDLENK--SLRVIADHIRSCAFLIADGVMP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG  +     L+P L + MG A   L Q + ++E+ L+
Sbjct: 300 SNEGRGYVLRRIIRRAVRHGNKLGANDAFFYKLVPTLISVMGDAAIGLKQTQAIVEKALK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGLV+LDG L+ L + + L+GD  FKLYDT+G P+D+  D+   R +  
Sbjct: 360 AEEEQFARTLERGLVILDGALNSL-QGDTLDGDTLFKLYDTYGFPVDLTADVCRERDI-N 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+ EQRSRA+A       G     + S       T F GY  L G       
Sbjct: 418 VDEAGFESAMAEQRSRAQAA------GNFGADYNSQLIIDAETAFSGYTELTGQPN---- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+   G+ V+   +GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 468 -------------------VIALYVDGKAVDTVKAGQDAVVVLDNTPFYAESGGQVGDKG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG+   + D QK       H   + +G L     L   +D + R +  +NHS THL
Sbjct: 509 LLTADGVVFTVADTQKFGPA-TGHQGQLAQGQLVIGQQLTAQVDKKLRHRTQLNHSVTHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LGSHVSQ GS + P+ LRFD  H + +  +ELK++ED VN  I +N  + T 
Sbjct: 568 LHAALRQVLGSHVSQKGSLVNPERLRFDFAHFEAVKPSELKAVEDLVNTQIRRNHELCTA 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  ++A   GA AL G KY+D+VRVV++     G  S  LCGGTHV  TG+I L  I S
Sbjct: 628 EMAIDEAKEKGAMALFGEKYDDQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG+RRIEA+TG  A +++  Q   L   A  LK    +VV +++   ++ ++L+ 
Sbjct: 683 ENGIAAGVRRIEAVTGIAAMAYIAEQQAMLDEAAQLLKSDSASVVVKLKAQLDKVKQLEK 742

Query: 773 IHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             ++ K +L     +       +I  V  +   +  +D   L+ + D L++K++S II+L
Sbjct: 743 DLSQLKDKLAAAASADMAGDAVEINGVKLLVKQLDGIDPGSLRGLQDELKQKLKSAIIVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G +K+ K +++  V+ DL  +  A +L  + A+ + GG GGGRP MAQ+GG        
Sbjct: 803 -GTAKDGKVNLIAGVSNDLTKKVKAGELVAMVAQHV-GGKGGGRPDMAQAGGTQPENLAA 860

Query: 888 AIAGVASFLKK 898
           A+A V  ++ +
Sbjct: 861 ALALVEPWVNE 871


>gi|39936908|ref|NP_949184.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|48428511|sp|P61706|SYA_RHOPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39650765|emb|CAE29288.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 889

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/899 (51%), Positives = 610/899 (67%), Gaps = 39/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+  +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  V+   +G+   ++ +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 463 ------ETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I  E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ AG+RRIEA+TG+ AR +        K  AS L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756

Query: 774 --HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              A++KL +      +        I  +  M+  +  ++ K+LK ++D  +K++ SG+I
Sbjct: 757 LSEARKKLAMGGSAAGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875


>gi|307132211|ref|YP_003884227.1| alanyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306529740|gb|ADM99670.1| alanyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 875

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 543/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSPQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLFK LI  +  V G     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYEIDLFKALIAEAASVVGTDDLNNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIKVMGPAAEELQRQQGLVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL+LLD  +  L K + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR  S G G+      + SL     +T F GY+          
Sbjct: 420 -VDEEGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDESTTFCGYERTD------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQSKVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D QK  + I  H   + +G LR    +   +D+  R ++ +NHSATH
Sbjct: 510 GELTSAAARFSVADAQKYGQAI-GHIGKLTQGSLRVNDKVDAVVDHVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN  I +NLPV T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDSYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A A GA AL G KY + VRV+S+     G  S  LCGGTH   TG+I L  IV
Sbjct: 629 DVMALDAARAKGAMALFGEKYEENVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A   L  Q++ L  +   +K    N+  +V  + E  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGENAIVALHHQNDLLHEVTQLVKGDSNNLADKVRSLLERTRGLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   +S V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESSSLSSKAKDINGVKLLVTQLSNVEPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  VT++L DR  A +L    A  + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-STVADGKVSLIAGVTKELTDRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALP 861

Query: 887 QAIAGVASFL 896
            A+  + +++
Sbjct: 862 SALTSIEAWV 871


>gi|58040217|ref|YP_192181.1| alanyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|81556989|sp|Q5FQ21|SYA_GLUOX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58002631|gb|AAW61525.1| Alanyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 879

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/904 (48%), Positives = 586/904 (64%), Gaps = 36/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR+ FLE+F   GH ++PS+SL+P NDPTL+FTN+GMVPFKN+FTGQE   Y  
Sbjct: 1   MTSTNDIRSAFLEYFGSQGHRIVPSASLVPQNDPTLLFTNAGMVPFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW LLT++F L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY EDE+A  LWKKI+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G
Sbjct: 121 PKDKLLATVYAEDEDAADLWKKIAGLSDDRIIRIGTSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS  E+G+R++EIWNLVFMQF  Q    R  LP+ SIDTGMGLER A ++Q 
Sbjct: 181 DSVFGGPPGSPDEDGDRFVEIWNLVFMQFLDQPDGSRDALPRPSIDTGMGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI+AS ++     +G    +HRV+ DHLRS++FLIADG+LP+ EGRGY
Sbjct: 241 KRDNYDTDTMRALIEASAEIMHQDADGPFKASHRVVADHLRSTAFLIADGVLPSKEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G  EP+   LLPAL  +MG+AYPEL+Q + LI +T++ E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHIMGAKEPVFYRLLPALIQQMGAAYPELVQHQALIAQTMKGEEERFT 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL   L  LG  E L GDVAFKLYDT G PLD+ QD L  +G   +D   F 
Sbjct: 361 ALLERGLTLLSDELDRLGDKEALPGDVAFKLYDTFGFPLDLTQDALREKGRT-VDEAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA  +G G    E +WF  ++K+G ++F+GY                   
Sbjct: 420 TAMAEQRKRARAAWVGSGDAAAETVWFDARDKHGPSEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
               ++    + V+ I +  + +  A +G   V ++ +QTPFY E+GGQ+GD G     G
Sbjct: 461 ----VSEKADAEVQGIFRGNDELASAPAGDDTVAILLNQTPFYGESGGQVGDHGTLTAPG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R++ITD QK+   + VH+  V  G L+  M++   ID+  R  +  +HSATHLLH AL 
Sbjct: 517 VRVEITDTQKRNGDLIVHYGKVVEGTLKPGMAVHAEIDHARRTAVRGHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G+HV+Q GS   P+ LRFD++  +P+T  EL ++E  VN  I +N PV TR+M +E+
Sbjct: 577 RQIGTHVTQKGSLNAPERLRFDISQPRPLTDEELAAVEAEVNARIRENAPVETRLMTQEE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+A GA AL G KY D VRVVS+   D     +S  LCGGTHV   GEI    IVSES +
Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGKGDDDRPAYSIELCGGTHVGRVGEIGPFRIVSESGV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            AG+RRIEA+ G  A +  +  + +LK +A  LKV   +   RV  + EE + L  Q+  
Sbjct: 697 SAGVRRIEAVCGLAAEALALETESRLKQIADLLKVPVADAASRVAALLEERKSLTAQVSD 756

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +RKL       +   I  +   +  + +V  KELK + +++ K+I SG++ L+  S + 
Sbjct: 757 LQRKLATGEGTSATESINGITLSARDLGDVSPKELKGLAESISKQIASGVVALMS-SADG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           + S++I VT+DL DR +AV L R ++ ++GG GGGGRP MAQ+GGPN +        V +
Sbjct: 816 RGSIVIAVTKDLTDRLDAVKLVREASALMGGKGGGGRPDMAQAGGPNADS-----DAVFA 870

Query: 895 FLKK 898
            L+K
Sbjct: 871 MLRK 874


>gi|271501699|ref|YP_003334725.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270345254|gb|ACZ78019.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 875

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 546/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQIVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTSSQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYASDDEAYDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI  + +V G     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RISAVLQHVNSNYDIDLFKTLIAEAARVVGTDDLNNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG+A  EL + + L+E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIEVMGAAGEELKRQQSLVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL+LLD  +  L K + L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KNEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR  S G G+      + SL     +T F GY+          
Sbjct: 420 -VDEAGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDASTSFCGYERTE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V AI +QGE V+E  +G    V+  +TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQSTVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +       + D QK  + I  H   + +G+LR    +   +D+  R ++ +NHSATH
Sbjct: 510 GELVSAAACFSVADAQKYGQAI-GHIGSLAQGVLRVNDKVNAVVDHVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +   +++ +ED VN  I +NL + T
Sbjct: 569 LLHAALRQVLGEHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLSIDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A A GA AL G KY++ VRV+S+     G  S  LCGGTH   TG+I L  IV
Sbjct: 629 DVMALDAARAKGAMALFGEKYDEHVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A   L  Q + L  +   +K     +  +V  + E  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGENAIVALHEQSDVLHEVTQLVKGDSNTLADKVRSLLERNRGLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQQAAQESSSLSSKAKEINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     + K S++  VT++L +R  A +L    A  + GG GGGRP MAQ+GG + +   
Sbjct: 804 L-STVADGKVSLIAGVTKELTNRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 SALTSVEAWV 871


>gi|22124793|ref|NP_668216.1| alanyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45440238|ref|NP_991777.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108810954|ref|YP_646721.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145600311|ref|YP_001164387.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|153997648|ref|ZP_02022748.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162420472|ref|YP_001605466.1| alanyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165925794|ref|ZP_02221626.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936759|ref|ZP_02225326.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010167|ref|ZP_02231065.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213026|ref|ZP_02239061.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398342|ref|ZP_02303866.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421632|ref|ZP_02313385.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423275|ref|ZP_02315028.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467648|ref|ZP_02332352.1| alanyl-tRNA synthetase [Yersinia pestis FV-1]
 gi|218930326|ref|YP_002348201.1| alanyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229838925|ref|ZP_04459084.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896406|ref|ZP_04511574.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229899492|ref|ZP_04514633.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901170|ref|ZP_04516293.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270489353|ref|ZP_06206427.1| alanine--tRNA ligase [Yersinia pestis KIM D27]
 gi|20532253|sp|Q8ZBT8|SYA_YERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122385127|sp|Q1CLK9|SYA_YERPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830294|sp|A9R0V7|SYA_YERPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830295|sp|A4TQ52|SYA_YERPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21957617|gb|AAM84467.1|AE013691_6 alanyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45435094|gb|AAS60654.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774602|gb|ABG17121.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|115348937|emb|CAL21896.1| alanyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145212007|gb|ABP41414.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149289285|gb|EDM39365.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|162353287|gb|ABX87235.1| alanyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165915408|gb|EDR34018.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922406|gb|EDR39583.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991074|gb|EDR43375.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205813|gb|EDR50293.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960551|gb|EDR56572.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050846|gb|EDR62254.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057445|gb|EDR67191.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229681895|gb|EEO77988.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229686984|gb|EEO79059.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695291|gb|EEO85338.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700480|gb|EEO88511.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|270337857|gb|EFA48634.1| alanine--tRNA ligase [Yersinia pestis KIM D27]
 gi|320016499|gb|ADW00071.1| alanyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 875

 Score =  977 bits (2526), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 558/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYGQAI-GHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 TESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   I  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 AALASVEAWV 871


>gi|78485931|ref|YP_391856.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123555227|sp|Q31F91|SYA_THICR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78364217|gb|ABB42182.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
          Length = 864

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/901 (43%), Positives = 552/901 (61%), Gaps = 47/901 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF K GH  + SS ++P NDPTL+FTN+GMV FK  F GQE   Y+  
Sbjct: 1   MTSAELRKAFLDFFVKQGHTAVHSSPVVPGNDPTLLFTNAGMVQFKETFLGQETREYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW  LT+E  L 
Sbjct: 61  TSVQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWTFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ITV++ED EA  +W K  G+SA++  R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 EEKLWITVFEEDREAEDIWLKEMGVSAERFSRCGAKDNFWSMGDTGPCGPCSEIFYDHGA 180

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+RYIEIWNLVFMQF++        LPK S+DTGMGLER+A V+Q +
Sbjct: 181 DVAGGPPGSPDEDGDRYIEIWNLVFMQFDRSEDGTLTPLPKPSVDTGMGLERLAAVMQNQ 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNYDIDLF+ +++ + ++TG K   N+  + RVI DH+RS +F++ DG+LP+NEGRGYV
Sbjct: 241 HNNYDIDLFQAIVKKASELTGEKDLANS--SLRVIADHIRSCAFMVVDGVLPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG T+     L+P L  +MG AYPEL++ +  +E  L+ E+ERF +
Sbjct: 299 LRRIIRRAIRHGYKLGQTDIFFYQLVPTLVEQMGEAYPELVKEQANVERALKLEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  ++ L    +++G  AFKLYDT+G PLD+  D+   R L+ +D   F Q
Sbjct: 359 TLENGMKILEEDIAQLS-GSVISGSTAFKLYDTYGFPLDLTADVARERNLS-VDEAGFEQ 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR+RAR+ S   G+ +  K+ ++     G+T FIGY+                   
Sbjct: 417 EMEAQRARARSAS-NFGAQSKNKVDYT-----GSTHFIGYE------------------- 451

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                +   + + AI      VE+A  GQ+  V+ +QTPFYAE+GGQ+GD G        
Sbjct: 452 ----QDEAEAEIAAIFVDNVSVEKASEGQEAIVILNQTPFYAESGGQVGDQGSLTEGMNS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + + QK+    F+H   V  G +    +++  ID + RR    NHSATHLLH AL T+
Sbjct: 508 FHVDNCQKQ-GAAFLHIGKVTAGSISVGQTILAHIDVKARRASERNHSATHLLHAALRTV 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV Q GS + P+ LRFD +H +PI++ +L  IE  VN  I  N  V+   M+ E A 
Sbjct: 567 LGTHVGQKGSLVQPERLRFDFSHFEPISAEQLLEIEQLVNHNIMLNAQVMMEEMDIEAAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY D VRVV     D G  S  LCGGTHV+ TGEI    I SES I +G+
Sbjct: 627 AKGAMALFGEKYGDVVRVV-----DMGDFSIELCGGTHVNWTGEIGPFRITSESGIASGV 681

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRIEA+TG+ A   +   ++ L ++A+ LK  +  V  +V ++  E ++L  QL   + K
Sbjct: 682 RRIEAVTGEAAWQTIYDMEKSLLNIAANLKTDKPQVESKVAQLVTEQKELEKQLKQLQSK 741

Query: 779 LQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +  D       ++  VN ++  +   D   L+  +D L+ K++   I+L  +  + K
Sbjct: 742 LASSQGDDLASSVTEVNGVNVLAAELEGADVNTLRETLDKLRDKLEPAAIVLAAVDGD-K 800

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  V++ +     A +L    A+ + GG GGGRP MAQ+GG + +K  +A+A V  +
Sbjct: 801 VSLVAGVSKSITGNVKAGELVNHVAQQV-GGKGGGRPDMAQAGGKDPSKLKEALASVKEW 859

Query: 896 L 896
           +
Sbjct: 860 V 860


>gi|127512149|ref|YP_001093346.1| alanyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|205830205|sp|A3QC89|SYA_SHELP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126637444|gb|ABO23087.1| alanyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 874

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 561/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF++NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEFFRRNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRDYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY+ D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYETDDEAFEIWNKEIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG   E+G+R+IEIWN+VFMQ+ +Q       LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGTMDPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+    N   + RV+ DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQSLIKKTAEILGVTDLENK--SLRVVADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A  EL+  + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKELVATQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L + + L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDNALSQL-EGKELDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  +  +    +    T+F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GQFDTDYNDSLKIDAETEFCGYSDLNG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V  +   G+ V+    G +  VV D TPFY E+GGQ GD G  
Sbjct: 465 --------------EAKVIGLYVDGQAVDALAEGDQGVVVLDSTPFYGESGGQCGDKGLL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G+  ++ D QK  +    H  +V+ G +    +L   +D + R +  +NHS THLLH
Sbjct: 511 SAEGVEFEVKDTQKYGQA-MGHIGLVKAGSIAMGQTLNAAVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + +   ELK +ED VN  I +N  +   +M
Sbjct: 570 AALRQVLGTHVSQKGSLVEPERLRFDFSHFEAVKREELKQVEDLVNTQIRRNHELKAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIDQAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  AS LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAIAYVGEQQAQLEQAASLLKGDSASVVAKLKAQLDKTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++A V  +  ++  V++  L+ + D L++K+QSGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQELAGVKVLVKLLEGVEAGALRGLQDELKQKLQSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K +++  VT+DL  +  A +L  + A  + GG GGGRP MAQ+GG    K   A+
Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPEKLAGAL 862

Query: 890 AGVASFLKK 898
             V  +L +
Sbjct: 863 DSVIPWLSE 871


>gi|296133407|ref|YP_003640654.1| alanyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031985|gb|ADG82753.1| alanyl-tRNA synthetase [Thermincola potens JR]
          Length = 884

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/910 (41%), Positives = 560/910 (61%), Gaps = 44/910 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK +F G ++  Y+  
Sbjct: 1   MTGNEIREKFLKFFENKGHTIIASSSLVPHDDPTLLFTNAGMNQFKEVFLGLDRRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L 
Sbjct: 61  TTSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWQFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEEA +LW++I+GL  +++IR+   DNFWSM +TGPCGPCSE+  D+GE
Sbjct: 121 KDRLYATVYRDDEEAAQLWQEIAGLPPERVIRLGEKDNFWSMGDTGPCGPCSEVLIDRGE 180

Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       + + +R++EIWNLVFMQ+ +    E   LPK SIDTGMGLER+A+V+Q
Sbjct: 181 EFKCAADNCAIGACDCDRWLEIWNLVFMQYNRDESGEMTPLPKPSIDTGMGLERIASVMQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +  +N+D DLFK ++   E+++G + Y+       RVI DH R+ +FLI+DG+LP+NEGR
Sbjct: 241 KVNSNFDTDLFKPIMAKVEELSGSVYYQDERGFPFRVIADHARACTFLISDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + ++LG  +P +  ++  +   MG AYPE+ + +  +E+ ++ E+ER
Sbjct: 301 GYVLRRILRRAVRFGKVLGIEKPFLYQMVGVVADLMGDAYPEIREKQTYVEQVIKIEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G+ L+  ++  +  +  + ++G  AF LYDT+G PLD+ +DI    GL  +D 
Sbjct: 361 FHETLHEGMRLVSDIVEKVKAEGRQSISGQEAFLLYDTYGFPLDLTEDIAEEHGLT-VDK 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+EEQR+RARA          ++++  + +K GAT+F GY  L            
Sbjct: 420 DGFAAAMEEQRTRARAARQDEAMLAGQELYAEVGQKLGATEFTGYSELETR--------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A++   E   E  +G++VEV+ D+T FY E+GGQ+GD G   
Sbjct: 471 --------------ANVVALIVDKEFRHEVRAGEQVEVIMDRTCFYGESGGQVGDRGILE 516

Query: 536 GD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            + G  +++TD +K   G+ VH   VE+ I+     +   +D + R+Q++ NHS THLLH
Sbjct: 517 SNRGAVIKVTDTKKTFNGLMVHLGTVEKDIVSFGDVMDARVDARRRKQIARNHSVTHLLH 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + P+ LRFD TH + +T  EL+ +ED VN++I  NL V     
Sbjct: 577 KALKEVLGDHVNQAGSLVEPERLRFDFTHFRAVTPEELQKVEDRVNEMILANLDVHAFET 636

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A A GA AL G KY ++VRVV +     G +S  LCGGTH+ STGE  L  I+SES
Sbjct: 637 SLDEAKALGATALFGEKYGEKVRVVKM-----GDYSMELCGGTHLRSTGEAGLFKILSES 691

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG+    ++  Q+ +LK +A  +K S   VV RVE I +  R+ +   
Sbjct: 692 GIGAGLRRIEAVTGEGTLRYIAEQEARLKDIARLVKSSPAEVVKRVENIVDNLREKEKEL 751

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + + +L  E+         ++A    ++      D   L+ + D L+ K+ SGI++L G
Sbjct: 752 EQLQARLAREESQNLMDKVKEVAGAKVLAVPTGAPDMDALRHMGDMLRDKLGSGIVVL-G 810

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +   K + + +VT+DL+ +  +A ++ +  A+V GGGGG GRP MAQ+GG +  K + A
Sbjct: 811 ATLGDKVNFVAMVTKDLVAKGAHAGNIIKEVARVAGGGGG-GRPDMAQAGGKDPAKLEAA 869

Query: 889 IAGVASFLKK 898
           +      +++
Sbjct: 870 LQKAYEVIEQ 879


>gi|89075063|ref|ZP_01161504.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89049150|gb|EAR54715.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 874

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/909 (42%), Positives = 535/909 (58%), Gaps = 55/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIGYAWEFLTSVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLVVTVYETDDEAFDIWNKEIGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQVDGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+ + +V G +   N   + RV+ DH+RS ++LI+DG++P
Sbjct: 243 IAAIMQGVHSNYEIDIFQTLIKEAAKVIGFEDLSNQ--SLRVVADHIRSCAYLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL   + L+E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAEGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++ FG+TLDRGL +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEDNFGRTLDRGLTILNEALDKL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR       +G     + +  +    T F GY    G       
Sbjct: 419 IDEDGFEAAMEEQRQRAR------DAGNFGVDYNNAIKVDAETVFCGYSATDG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S + A+ + G  V+   +G++  VV   TPFYAE+GGQ GD+G
Sbjct: 466 ----------------ESEIVALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               + +   + D QK       H   V  G L     L  ++D   R  +S+NHSATHL
Sbjct: 510 ILTAEAVLFNVDDTQK-FGAAIGHKGQVAEGSLTVGQKLTASVDSARRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL TILG HVSQ GS +  DGLRFD ++ + +   +L+++E  VND I  N  + T 
Sbjct: 569 MHAALRTILGEHVSQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H + TG+I L  I+S
Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  +   +  +D  L   A  +K    +VV +VE +    ++L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGAASIEEMHNEDVMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++         +I  V  +   ++  D+K L+ ++D L+ ++ SG+++L
Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   + K  ++  VT+DL+ +  A +L  L A+ + GG GGGRP MAQ+GG +      
Sbjct: 804 -GNVSDDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861

Query: 888 AIAGVASFL 896
           A+  VA +L
Sbjct: 862 ALETVAPWL 870


>gi|292491239|ref|YP_003526678.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291579834|gb|ADE14291.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 873

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 550/906 (60%), Gaps = 50/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F+  GHE++PSS L+P NDPTL+FTN+GMV FK++F G+E   Y+ 
Sbjct: 1   MKSSAELRKIFLDYFRHQGHEIVPSSPLVPANDPTLLFTNAGMVQFKDVFLGRETRAYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W LLT+   L
Sbjct: 61  AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYGWALLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+ITV+++D+EA  +W K  G+S ++  R    DNFWSM +TGPCGP SEIF+D G
Sbjct: 121 PPERLWITVFEDDDEAANIWLKEIGVSPERFARCGAEDNFWSMGDTGPCGPSSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS E EG+RY EIWNLVFMQ+++  +     LPK S+DTGMGLER+A V+Q 
Sbjct: 181 SGIAGGPPGSPEQEGDRYTEIWNLVFMQYDRNKEGHLSPLPKPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF++LI A   ++G+  +     + RVI DH+RS +FLI DG+ P+NEGRGY
Sbjct: 241 VHDNYDIDLFRNLITAITALSGI--QNQEPTSLRVIADHIRSCAFLIVDGVQPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL QA+  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYQLVQPLAVEMGEAYPELPQAQSRVERMLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL +L+  + +L   +++ G+  F+LYDT G P+D+  DI   RGL  +D+  F 
Sbjct: 359 ETLDQGLKILEQDIENLS-GQVIPGETVFRLYDTFGFPVDLTADIARERGLT-LDMRGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +QR RARA S        +       +    T+FIGY+ LRG              
Sbjct: 417 HAMAKQRERARAASRFKIEYGPD------LQLDLETEFIGYEHLRG-------------- 456

Query: 480 PPIDLTNGVSSIVKAIV---QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       V A+    +  E VE+  +G+K  VV D+TPFYAEAGGQ+GD G    
Sbjct: 457 ---------EGQVTALFRVAETTEAVEQLSAGEKGIVVLDRTPFYAEAGGQVGDQGTLRA 507

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G    +TD QK+    + H   V  G LR    +   ++  +R    +NHSATHLLH +
Sbjct: 508 PGGLFNVTDTQKQ-GAAYAHLGEVRLGELRVGDLIQAEVERAHRAPTRLNHSATHLLHAS 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +T D LRFD +H + +   +L+ IE  VN  I  +LPV T+IM  
Sbjct: 567 LRQVLGEHVAQKGSLVTADRLRFDFSHFEALEPEQLRQIERLVNAQIRADLPVETQIMPL 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+ +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG I L  I++E+ I
Sbjct: 627 QEALDAGVVALFGEKYGEQVRVLRM-----GNFSVELCGGTHVDRTGNIGLFKIINETGI 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA+TG+ A   +   + +L+++A  LK S+ +V+ ++E + ++ R+ +     
Sbjct: 682 AAGIRRIEAVTGEAALRWVEENEARLEAVAGLLKASRESVIDKLELLQQQARQQEKEIQS 741

Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L             +I  V  ++  I  VD K L++  D L+ K+ +  I+L G  
Sbjct: 742 LKARLASAGGSDLSAQAQEIQGVKVLAARIDGVDIKTLRNTADQLKSKLATAAIVL-GTV 800

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT++ +++  A DL    A+ + GG GGGRP MAQ+GG + +K D A+  
Sbjct: 801 VEGKVVLIAGVTKNAINQIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGKDPDKLDAALKS 859

Query: 892 VASFLK 897
           V  +++
Sbjct: 860 VPEWVE 865


>gi|87122506|ref|ZP_01078386.1| alanyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86162299|gb|EAQ63584.1| alanyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 871

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/909 (42%), Positives = 557/909 (61%), Gaps = 55/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S +R +FL++F+   H+++ SSSLIP NDPTL+FTN+GMV FK++F G +   Y  
Sbjct: 1   MKS-SELRQSFLKYFESKQHQVVDSSSLIPGNDPTLLFTNAGMVQFKDVFLGMDDRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+   L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTQVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L +TVY +D+EA+ +W K  G+  D+I+RI  N       DNFW M +TGPCGPC+
Sbjct: 120 PTEKLLVTVYADDDEAWDIWAKKIGVPEDRIVRIGDNKGARYASDNFWQMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+R+IEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 180 EIFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRDANGVMNPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQ   +NY+ID+F++LI+A+ +V G   +     + RVI DH+RS SF+I DGI+P
Sbjct: 240 IAAILQGVHSNYEIDIFQNLIKAAAKVVGT--DDLEAQSLRVIADHIRSCSFMIVDGIVP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG  +     L+  L TEMG AYP+L +    I+  L 
Sbjct: 298 SNEGRGYVLRRIVRRAIRHGHKLGQKQAFFNTLVADLVTEMGDAYPDLAKLADRIQAILL 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTL++G+ +LD  +  LG  +I++G+  FKLYDT+G P D+  D+   R L  
Sbjct: 358 KEEEQFAKTLEQGMRILDDAIGELGDSKIISGETVFKLYDTYGFPADLTNDVARERHLE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR+RAR+ S          +  S   + G T+F GY  L         
Sbjct: 417 IDEKGFERAMEEQRNRARSASQ-------FTMDMSGSIEAGDTEFTGYSHLVDEC----- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              ++A++  GE VE   +GQ   V+  QTPFY E+GGQ+GD G
Sbjct: 465 ------------------EIEALILDGEKVESLTAGQSGIVILKQTPFYGESGGQVGDQG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G+G    +T+  K+ +   +HH  +  G +     L  T+D   R    +NHSATHL
Sbjct: 507 WLRGNGA-FSVTNTTKQGK-THLHHGELREGSITLGDKLTATVDASLRAATGLNHSATHL 564

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  ++G HV Q GS    + LRFD +H + +T+AE++ +ED VN+ I  N  V+T 
Sbjct: 565 MHEALRRVVGDHVHQKGSLCDAERLRFDFSHFEGVTAAEIEQVEDMVNEQIRLNHEVLTE 624

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E A   GA AL G KY+ +VRV+++  E    +S  LCGGTHV  TG+I +  IV+
Sbjct: 625 EMDIESAKERGAMALFGEKYDSQVRVLTMGSE----YSIELCGGTHVKRTGDIGVFKIVA 680

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RRIEAITG+ A  +    ++ ++ +A+ +K ++ N++ +V  + ++ R LQ 
Sbjct: 681 ESGIAAGVRRIEAITGKVAIDYNRATEKSVQQVAALVKGNKENMIEKVTALSDQNRALQK 740

Query: 773 IHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
                K KL          +  D++    ++++V   D K L+ ++D L+ K++S +I+L
Sbjct: 741 ELDVIKAKLAAQAGSDLASQAVDIDGGKLLVAQVDVEDPKALRDMLDELKSKLESAVILL 800

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K S++  VT++L  +  A DL ++ A ++  G GGGRP MAQ+GG N     +
Sbjct: 801 ASV-NDSKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGRGGGRPDMAQAGGNNPAGLPE 858

Query: 888 AIAGVASFL 896
           A+A V  ++
Sbjct: 859 ALASVQPWV 867


>gi|33592894|ref|NP_880538.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|41018186|sp|Q7VXE1|SYA_BORPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33572542|emb|CAE42122.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I]
          Length = 874

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/912 (43%), Positives = 549/912 (60%), Gaps = 54/912 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FFQ  GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E   Y+ 
Sbjct: 1   MKS-SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ + L
Sbjct: 60  ATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWNLVFMQFE+        LPK  +DTGMGLER
Sbjct: 180 EIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF+ LI A+ + TG+K   +N  + +VI DH+R+ +FLI DGI+P
Sbjct: 240 IAAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADN--SLKVIADHIRACAFLIVDGIIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+P L  EMG AYPEL Q    + + LR
Sbjct: 298 SNEGRGYVLRRIVRRALRHGYKLGQTKSFFHRLVPDLVAEMGEAYPELAQVAERVAQVLR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +LDG L+ + K + L+G   F LYDT+G P+D+  DI   R +  
Sbjct: 358 QEEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICREREVE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F  A++ QR +ARA           K+   L  +   T+F GY+ L  S      
Sbjct: 417 VDMAGFEAAMQRQREQARAAGK-------FKMAEGLSYEGAETRFEGYENLELSGV---- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V A+  +G  VE+  +GQ   VV D TPFYAE+GGQ+GDTG
Sbjct: 466 ------------------KVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G+R  + D  K   G+F HH  +E G L+   +L+  +D   R +   NHSATHL
Sbjct: 508 LLEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV Q GS + PD  RFD  H  P+T+ ++  +E  VN  +  N     +
Sbjct: 568 MHKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAK 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  +VS
Sbjct: 628 VMAYDDAVKGGAMALFGEKYGDTVRVLDIG------FSRELCGGTHVRRTGDIGLFKVVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEAITG  A + +  Q+  L+  A  L+     +  R+ ++ E+ + L+ 
Sbjct: 682 EGGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIAQVQEQLKALEK 741

Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + + +L     +        ++  +  ++  I +VD K L+ ++D L+ +++  +++
Sbjct: 742 ELEQARTKLAASAGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   S + K S++  VT DL  R  A DL    A  +GG GG GRP MA  GG +     
Sbjct: 802 LAAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKGG-GRPDMAMGGGTDLAALP 860

Query: 887 QAIAGVASFLKK 898
            A+A V  ++ +
Sbjct: 861 AAVASVQKWVDE 872


>gi|167570231|ref|ZP_02363105.1| alanyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 874

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/912 (41%), Positives = 531/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A +IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGIGDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A   + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L  L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L      T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LDYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL   KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFDEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L         L   ++  V+ ++  +   D+K L+  +D L+ K+++  I+
Sbjct: 743 KELAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-DGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|167563044|ref|ZP_02355960.1| alanyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 874

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/912 (41%), Positives = 532/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A +IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKAAARETGIGDLTNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A   + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L  L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L      T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LDYSGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  ++A+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I    IV
Sbjct: 629 RVMPYDEAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  H+   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRHVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKLLE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K +L         L   ++  V+ ++  +   D+K L+  +D L+ K+++  I+
Sbjct: 743 KELAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT +   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-DGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|83312631|ref|YP_422895.1| alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123541005|sp|Q2W1D9|SYA_MAGMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82947472|dbj|BAE52336.1| Alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 878

 Score =  976 bits (2524), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/906 (49%), Positives = 600/906 (66%), Gaps = 40/906 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK+F +
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDLAIEHAWNLITKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY +D++A   WKKI+GL   +IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DKSRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  ++G+R+IEIWNLVFMQFEQ +K+ R  LPK SIDTGMGLER+A +LQ 
Sbjct: 181 EHIFGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRIPLPKPSIDTGMGLERLAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD+DL + LI+AS + +    +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDVDLLRALIEASAEASNTDPDGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG AYPEL++A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLHKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  ++ +G  + L G+VAFKLYDT+G PLD+ QD L A+G+ G+D   F 
Sbjct: 361 VTLDKGLKLLDDEITRIGSGQKLAGEVAFKLYDTYGFPLDLTQDALKAKGI-GVDTDGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ AR    G G   TE +WF L+EK GA++F+GYD                  
Sbjct: 420 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYDA----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA----- 534
                       + A+V+ G++VE    G +V V+ +QTPFY E+GGQ+GDTG       
Sbjct: 463 ------EQAEGKIVALVENGKVVEAVHPGHQVAVIANQTPFYGESGGQMGDTGVITLGTP 516

Query: 535 -IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G    + +TD QKK   + VH   VE G +         ++   R     +HSATHLL
Sbjct: 517 GTGGKATIAVTDTQKKLGDLIVHFGTVEGGPVAVGEDAHFAVESTRRDATRGHHSATHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ILG HV+Q GS + PD LRFD  H+K +++ E +++E  VN  I  N  V T++
Sbjct: 577 HAALRDILGDHVTQKGSQVGPDRLRFDFAHTKALSAEETRAVEAEVNRRIRLNAEVATKV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DAI +GA AL G KY + VRVVS+     G  S+ LCGGTH + TG+I    IV+E
Sbjct: 637 MTPDDAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHANRTGDIGGFKIVAE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG    +    Q++ L   A  LK +  ++  R+  + ++ RKL+  
Sbjct: 692 SAVASGVRRIEAVTGPAFLAWAQAQEDLLAKAADTLKAAPADLPARIAGLMDDRRKLERE 751

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSH---IISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            A+ + QL            VN +++   ++S V +K+LK + D ++K+I SGII LV  
Sbjct: 752 LAEVRKQLATGGGQGAATKTVNGITYAGKVLSGVPAKDLKGMADEIKKQIGSGIIALVS- 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + KAS+++ VTEDL  + +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A  A+ 
Sbjct: 811 DADGKASIVVCVTEDLTSKHSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAVD 870

Query: 891 GVASFL 896
            +   L
Sbjct: 871 RIEQAL 876


>gi|30249882|ref|NP_841952.1| alanyl-tRNA synthetase domain-containing protein [Nitrosomonas
           europaea ATCC 19718]
 gi|41018196|sp|Q82TF8|SYA_NITEU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30180919|emb|CAD85841.1| Alanyl-tRNA synthetase:DHHA1 domain [Nitrosomonas europaea ATCC
           19718]
          Length = 863

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/904 (42%), Positives = 550/904 (60%), Gaps = 49/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FLEFF+  GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y  
Sbjct: 1   MKS-SEIRQKFLEFFEARGHVIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI  AW+ LT    +
Sbjct: 60  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRKAILFAWEFLTGSLGI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L+ TVY ED+EA  +W    G+   +++RI T+DNFW M +TGPCGPCSEIF+D G
Sbjct: 120 PREKLWATVYAEDDEAADIWLNEVGIDPSRLVRIATSDNFWQMGDTGPCGPCSEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS + EG+RYIEIWNLVFMQ+ +    E   LPK S+DTGMGLER+A V+Q+
Sbjct: 180 PAVAGGPPGSENAEGDRYIEIWNLVFMQYNRDASGELHPLPKPSVDTGMGLERIAAVMQQ 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+A+ +VTG K   NN  + +VI DH+R+ +FLI DG++P NEGRGY
Sbjct: 240 VHSNYEIDLFRSLIEAAARVTGSKDLSNN--SLKVIADHIRACAFLITDGVIPGNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L   MG AYPEL +A+  +   +R E+ERF 
Sbjct: 298 VLRRILRRAIRHGYRLGQKQPFFYLLVDDLVDVMGPAYPELTRARKHVAGVIRQEEERFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ +L+  LSH   +E L+G++ F+LYDT G P+D+  DI   RG+  ID+  F 
Sbjct: 358 ETLENGMEVLEAALSH--GNETLSGEIVFRLYDTFGFPVDLTADIARERGI-VIDMAGFE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR RARA                L+     T+F GY  L+               
Sbjct: 415 TCMAQQRDRARASGKFTMQTG-------LEYTGQPTEFHGYATLQH-------------- 453

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+ +QG  V+   +  +  VV DQTPFYAE+GGQ GD+G  +    
Sbjct: 454 ---------EAQILALYKQGSRVDFIEADDEAVVVLDQTPFYAESGGQAGDSGELLSGSG 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D QK   G+F H+ ++  G +     ++  +D   R   + NHSATHLLH AL  
Sbjct: 505 TFTVNDTQKIQAGVFGHNGMLSSGRMAIGDRVIARVDQIARTNTAYNHSATHLLHAALRQ 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS +    LRFD +H+  +   E++ +E+ VN  I +N  V T++M  +DA
Sbjct: 565 VLGNHVTQKGSLVDASRLRFDFSHNSAMQENEIRQVENLVNAQIRKNHEVATQLMTYDDA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA AL G KY D VRVV++     G  S+ LCGGTHVS +G+I    IV+ES + AG
Sbjct: 625 VKQGAMALFGEKYGDTVRVVAM-----GDFSTELCGGTHVSYSGDIGFFRIVAESGVAAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+TG  A ++   Q+++L+ +A  LK +      ++ +I +  R+++   A  + 
Sbjct: 680 IRRIEALTGDAALAYTQQQEQQLQQVADALKAAPQEAAQKLSQILDNIRQMEKEIATLRS 739

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             +I  +  ++  +  V+ K L+  +D  + +++S +++L  I K+ 
Sbjct: 740 KLAGVQSTSLIEQAQEIKGIRVLATTLENVNVKTLRETLDNFKNRLKSCVVVLGTIEKD- 798

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K +++  VT+DL  +  A DL    A+ + GG GGGR  MAQ+GG    K  QA+A V S
Sbjct: 799 KVTLIAGVTDDLTVKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPEKLPQALASVPS 857

Query: 895 FLKK 898
           ++++
Sbjct: 858 WVEQ 861


>gi|206578751|ref|YP_002236967.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|206567809|gb|ACI09585.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342]
          Length = 875

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYGQAI-GHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S +++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|33152493|ref|NP_873846.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|38372509|sp|Q7VLK0|SYA_HAEDU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33148716|gb|AAP96235.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 874

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 546/911 (59%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR +FL+FF   GH ++PSS+L+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MKTTSEIRQSFLDFFNSKGHTVVPSSALVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AIQ AW+ LT  K  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFAWEFLTSEKWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+ ++ IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 HLPKEKLYVTVYETDDEAYDIWHKTVGVPSEHIIRIGDNKGVPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE   GGLPG++ E+G+RYIE+WN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGESFWGGLPGTAEEDGDRYIEVWNIVFMQFNRQADGTLAKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERM  V+Q   +NY+ D+F+ LI+    +  +    N   + RVI DH+R+ S+LI DG+
Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLHVADLDNK--SLRVIADHIRACSYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   MG A   L   +  I++T
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLAKVMGQAGEILTDKQSYIQKT 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F +TL+RGL LL+  L+ + +++ L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LKTEEEQFARTLERGLALLEEALTKV-ENQTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID  SF   +  QR RA++ S           + S+ +    T FIGYD         
Sbjct: 418 -VIDEASFEIEMTAQRERAKSSS------NFGADYNSVIKVEAETAFIGYD--------- 461

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G+ V++  SG+   VV D+TPFYAE GGQ+GD
Sbjct: 462 --------------CFNAEAKVIALFSNGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       +  + D QK  + +F H   V  G L     +   +D   R+ ++ NHSAT
Sbjct: 508 SGLITTAFCQFAVADTQKYGQ-VFGHIGQVVSGSLAIGDIISAQVDIARRQAITANHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ++ + LRFD + S+ ++ A+L+ IE  VN  I QNL V 
Sbjct: 567 HLLHSALRQVLGEHVVQKGSLVSENVLRFDFSQSQAVSKAQLEEIERIVNRQIRQNLAVT 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ E A   G  AL G KY D VRVV +        S  LCGGTHV  TGEI L  +
Sbjct: 627 IETMDIETAKEKGTVALFGEKYGDVVRVVGM-----TDFSIELCGGTHVKHTGEIGLFKL 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           +SES++ AGIRR+EA+T + A + L  Q + +   A  LK    ++V ++ ++ ++ +  
Sbjct: 682 ISESAVAAGIRRVEALTAENAINWLHNQQKIIHQSAELLKTDSLSLVDKIYQLQDKIKRN 741

Query: 769 KLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + +L H K KL             +I  +N +   +  ++SK L++++D L+ ++ S +I
Sbjct: 742 EKELQHFKDKLAAQAGAELAKQVVQINGINVVIQKLEGIESKSLRTMVDDLKNQL-SSVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++ G     K ++++ VT+DL ++ NA +L  L A+ + GG GGGRP MA +GG      
Sbjct: 801 VVFGSVSADKVNLIVGVTKDLSNKVNAGELVGLIAQQV-GGKGGGRPDMAMAGGTEPQHL 859

Query: 886 DQAIAGVASFL 896
           D A+A    ++
Sbjct: 860 DTALAFAKQWI 870


>gi|316932874|ref|YP_004107856.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315600588|gb|ADU43123.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 890

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/900 (51%), Positives = 613/900 (68%), Gaps = 40/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  YQ 
Sbjct: 1   MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWELITRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA   WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G
Sbjct: 121 NKHQLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++E WNLVFMQ++Q  K ER  LP+ SIDTGMGLERMA++LQ 
Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +D DLF+ LI A+    G      +  + RVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VDSVFDTDLFRSLIDATASALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG +EPLM  L+ AL  EMG AYPEL++A+ +IEET+R E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD   + L K ++ +G+ AF LYDT+G PLD+ QD L  RG+  +DI SF 
Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR++ARA   G G   TE +WFSL+EK+GAT+F+GYD                  
Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKFGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  V+   +G    +V +QTPFYAE+GGQ+GDTG    DG+
Sbjct: 463 ------ETAEGVVMALVKDGTEVDALKAGDAAAIVMNQTPFYAESGGQVGDTGVLAADGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +T+  KKA  +FVH   VE+G ++   +L L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RFVVTETLKKAGDLFVHFGTVEQGTIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS + PD LRFD  H KPIT  EL+ +ED  NDI+ +N  VVTR+M  +DA
Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             +GA AL G KY D VRVVS+         +    S  LCGGTHV  TG+I L+ I +E
Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAAREHGSNALGWSVELCGGTHVKRTGDIGLVSITAE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ +G+RRIEA+TG+ AR +        K+ A+ L+ +  ++  R+  + +E +KL+  
Sbjct: 697 SAVASGVRRIEALTGRAARHNANAAISTAKTAAAELRTTLDDMPARIAALMDERKKLERE 756

Query: 774 --HAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              A++KL +               +I  V  M+  +  ++ K+LK ++D  +K+I SG+
Sbjct: 757 LSEARKKLAMGGSASGDGAAASDVREIGGVKLMARTVQGIEIKDLKGLVDQGKKQIGSGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I LV  S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K
Sbjct: 817 IALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876


>gi|197104453|ref|YP_002129830.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|196477873|gb|ACG77401.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 880

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/904 (48%), Positives = 586/904 (64%), Gaps = 34/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IRT FL+FFQ+  H ++PS+ L+P NDPTL+F N+GMVPFKN FTG E   +  
Sbjct: 1   MASLNEIRTHFLDFFQRKEHAVVPSAPLVPQNDPTLLFVNAGMVPFKNYFTGAEASPWPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI  AW+LLTKE+ L
Sbjct: 61  AASSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISHAWELLTKEWAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY  D+EA  LWKKI+GL   KI+RI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PVEKLMVTVYHTDDEAAALWKKIAGLPDHKIVRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG PGS  E+G+R++EIWNLVFMQFEQ     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EHIPGGPPGSPDEDGDRFVEIWNLVFMQFEQFADGTRADLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD+DLFK LI AS +        +   +HRVI DHLRSSSFLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDVDLFKDLI-ASTKAQLRAEGSDTTPSHRVIADHLRSSSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  + P L   MG AYPEL +A+  I ETLR E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGADEPLMHRVAPTLVNLMGEAYPELRRAEPAIVETLRQEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LL+   + L   ++L+G+ AFKLYDT+G PLD+ QD + A+GL  +++  F 
Sbjct: 360 RTLGRGMTLLEEATAGLKDGDVLSGETAFKLYDTYGFPLDLTQDAVRAKGLT-VNLDEFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+  QR  AR + +G G       WFS++++ G + F GYD                  
Sbjct: 419 QAMARQREMARENWVGSGQVAAAAEWFSIRDRLGPSDFTGYDNTE--------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +  +  +V +G+ +E A +GQ+V+ +FD+TPFYAE+GGQ GD G     G 
Sbjct: 464 --------ATGELLVLVSEGQEIERAGAGQRVQALFDRTPFYAESGGQAGDQGEVEWQGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TDVQK+A  + VH   +  G L     + L +D + R     NHSATHLLH AL  
Sbjct: 516 RARVTDVQKQAGDLHVHDLEILEGELVPGARVRLAVDAERRASTRSNHSATHLLHAALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H +P+T+ E++ IE  VN ++ QNLP  T+ M  ++A
Sbjct: 576 VLGKHVTQKGQMVDGERIRFDFSHGQPLTAEEIERIEAEVNAVVRQNLPAQTKNMRPQEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++    +  G +S  LCGGTHV+ TG+I L  IVSE  + 
Sbjct: 636 IDAGAMALFGEKYGDSVRVLTLGRALDGEGDYSVELCGGTHVARTGDIALFKIVSEQGVA 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ AR +L+ Q    KSLA   KV    V  R+E +  + RKL+   A  
Sbjct: 696 AGVRRIEALTGEAARRYLLEQASVAKSLAEQFKVPVSEVSARIEALQAQARKLEKELADA 755

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +           +I  V  M+ ++  V  K+L+ + +  +K++  G+I LVG++ 
Sbjct: 756 KRQLAMGGGGGAAAGPEEIGGVKVMARVMEGVGGKDLRPIAEEFKKQLPDGVIALVGVA- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA+V + VT     +FNA +LA+ +   +GG G GGRP  AQ G P+ +KA + +A V
Sbjct: 815 DGKAAVTVAVTGSATAKFNAAELAKAAVLAMGGQGAGGRPDFAQGGAPDASKAAEGLAAV 874

Query: 893 ASFL 896
            + L
Sbjct: 875 KALL 878


>gi|152971551|ref|YP_001336660.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|205830073|sp|A6TCV9|SYA_KLEP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150956400|gb|ABR78430.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 875

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG     N   + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNK--SLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   V  G L+   ++   +D   R ++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYGQAI-GHIGKVASGSLKVGDAVQADVDEARRHRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|238896148|ref|YP_002920884.1| alanyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548466|dbj|BAH64817.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 875

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG     N   + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNK--SLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYGQAI-GHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|167582193|ref|ZP_02375067.1| alanyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 874

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/912 (41%), Positives = 539/912 (59%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+           + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G+L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELVQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|262043942|ref|ZP_06017027.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259038706|gb|EEW39892.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 875

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGNMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG     N   + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNK--SLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYGQAI-GHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|261342139|ref|ZP_05969997.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288315472|gb|EFC54410.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 875

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/910 (43%), Positives = 566/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI+A  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLNNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYDALE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTGNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    ++D QK  + I  H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFSFSVSDTQKYGQAI-GHQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A   GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 NIMDLEAAKNKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEAAIASLHAQSDQLHDIAQLLKGDSQNLGEKVRVALDRTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESASLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDSAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|194290351|ref|YP_002006258.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193224186|emb|CAQ70195.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 874

 Score =  975 bits (2521), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 544/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLTK + L 
Sbjct: 61  TSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKTYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIE+WNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +     N  + +VI DH+R+ +FLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQN--SLKVIADHIRACAFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+P L  +MG AYPEL +A+  + E L++
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGQKTPFFHKLVPDLVEQMGQAYPELAEAQSRVTEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+   L   + L+G++AFKL+DT G PLD+ QD+   + + 
Sbjct: 359 EEERFFETIENGMAILDAALAELKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQEI- 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D  +F+ A+  QR +ARA      +         L+     T F GY+ L   +    
Sbjct: 418 GVDEAAFDAAMSRQREQARAAGKFKMAAG-------LEYIGDKTVFHGYEKLELPQ---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V+    GQ   VV D TPFYAE+GGQ GD 
Sbjct: 467 ------------------AKVTALYVDGAAVDTMQPGQTGVVVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D  K    +F H   ++ G L+   ++   +D   R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLQGGALKVGDAVSAQVDALRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD +H+  +T A+++ +E+ VN  I +N     
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDAQIRQVEEIVNAEILRNEDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EVMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  +L G D KL   A+ LK     +V R+ ++ E+ R L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNALHYLQGLDAKLNEAAAVLKAQPSELVPRIGQVQEQVRALE 742

Query: 772 LIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIM 826
                 K KL  +  D    +  DV  +  + +++D    K L+  MD L+ K+QS  I+
Sbjct: 743 KELERLKSKLAASQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LGAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFL 896
           QA+AGV+ ++
Sbjct: 861 QALAGVSEWV 870


>gi|295097277|emb|CBK86367.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 875

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/910 (44%), Positives = 567/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EAF +W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI+A  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDDELAKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYEELA------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++S V A+   G+ V+   +GQ+  V+ D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTSNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    ++D QK  + I  H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELKGNGFSFSVSDTQKYGQAI-GHQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ E A   GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 HIMDLEAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAQSDQLHEIAQLLKGDSQNLGEKVRVALDRTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|119383350|ref|YP_914406.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|205830170|sp|A1AZL6|SYA_PARDP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119373117|gb|ABL68710.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222]
          Length = 885

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/909 (49%), Positives = 589/909 (64%), Gaps = 37/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ +R+TFL +F++NGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNDVRSTFLNYFERNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLTK+F +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDGAIPFAWELLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDKLLVTVYHTDDEAADIWKKVAGLSDDRIIRIPTSDNFWQMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R+IEIWNLVFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQNEQFEDGTMRALDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRGLIEASAHATSADPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  EMG+AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVREMGAAYPELGRAQALIEETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLRLLDDELAKLPEGANLPGEAAFKLYDTYGFPLDLTQDALREKG-RAVDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + E++GAT+F+GYD                  
Sbjct: 420 SAMAEQKAKARAAWAGSGETKDAAIWFDIAEEHGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+VQ G  VEEA  GQ+V++V +QTPFY EAGGQ+GDTG    +  
Sbjct: 463 ------EISEGQVLALVQDGAAVEEAGEGQQVQIVVNQTPFYGEAGGQVGDTGLIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD  KK  G+F+H A V  G ++      L++D+  R  +  NHSATHLLH AL  
Sbjct: 517 AARVTDT-KKTGGVFIHIAEVTLGTIQRGQGAQLSVDHDRRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +T  EL  +E  VND I QN PV TRIM  +DA
Sbjct: 576 ALGEHVAQRGSLNAPDRLRFDFSHAKAMTPEELAQVEREVNDFIRQNSPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+           G  +S  LCGGTHV+ TG+I +  + S
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGELPGSGKGTGGQTYSLELCGGTHVARTGDIGMFALTS 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E++  AGIRRIEA+TGQ A   L   D +L  +A  +K   G+VV +V  + +E + L  
Sbjct: 696 ETASAAGIRRIEALTGQAAMDELRRVDGELNEIAGIVKAQAGDVVSKVRALADERKALAN 755

Query: 773 IHAKRKLQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ K QL +    +    +I  +  ++  +  V  KEL  ++D ++ ++ SG ++++ 
Sbjct: 756 EVAQLKRQLAMGGGSEDKPREINGIKLIARRVEGVSGKELGPLVDEMKSRLGSGAVVVLA 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + KA+V   VT DL  R +AV+L + +   LGG GGGGRP  AQ G P+   AD AI
Sbjct: 816 -EADGKATVAAGVTPDLTGRISAVELVQTATAALGGKGGGGRPDRAQGGAPSLAAADSAI 874

Query: 890 AGVASFLKK 898
           + V + + +
Sbjct: 875 SAVETLIGE 883


>gi|149915205|ref|ZP_01903733.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149810926|gb|EDM70765.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 887

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/912 (48%), Positives = 591/912 (64%), Gaps = 41/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF+KN H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNDIRSTFLNFFEKNDHQIVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GL  ++IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAADIWKKYAGLPEERIIRIATDDNFWSMGATGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ E+     +  L   SIDTGMGLER+  +LQ 
Sbjct: 181 PHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTQRDLDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS  +T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLLRALIEASANITDGAPDGPGNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +P+M  L+P+L T+MG AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGAADPVMHRLVPSLVTQMGQAYPELGRAQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L  D  L G+ AFKLYDT G PLD+ QD L  +G   +D+  F+
Sbjct: 361 QTLDRGLRLLDDELDKLASDAPLPGEAAFKLYDTFGFPLDLTQDALREKG-RSVDVAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IW+ + E  G T F+GYD  R               
Sbjct: 420 EAMSEQKAKARAAWSGSGEAADATIWYDIAEDKGTTDFLGYDTER--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G+ +E A  G++V++V +QTPFYAE+GGQ+GDTG    +G 
Sbjct: 465 --------AEGQIMALVRDGQRIEAASQGEEVQIVLNQTPFYAESGGQVGDTGVVRTEGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K   G+F+H A V  G +    +  L +D+  R  +  NHSA HLLH AL  
Sbjct: 517 AARITDTRK-VAGVFLHVAEVTEGRIVAGEAAQLEVDHTRRTAIRANHSAMHLLHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +++ EL+ +E +VN  I QN  V TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHAKALSAEELERVEADVNGFIRQNASVDTRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I +  +  
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGKLDGSGKGSDGRTYSIELCGGTHVRQTGDIGVFVVTG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           + +  AG+RRIEA+TG+ AR +L  Q  ++ +LA+ LK    +VV RV+ + +E ++L  
Sbjct: 696 DQASSAGVRRIEALTGEAARQYLSAQAHRVDALAAELKARPDDVVTRVKALMDERKQLAN 755

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L +             +I  V F++ ++  V  K+L +++D  + ++ SG +
Sbjct: 756 EVAQLRRELAMAGGAGQGDGPEMREIGGVPFLAQVLRGVSGKDLPAIIDEHKARMGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L+    + KA+V   VT+DL  R +AVDL R +  VLGG GGGGRP MAQ GGP+   A
Sbjct: 816 LLIA-DADGKAAVAAGVTQDLTGRVSAVDLVRAAVPVLGGKGGGGRPDMAQGGGPDAGNA 874

Query: 886 DQAIAGVASFLK 897
           + AI      L+
Sbjct: 875 EAAIKAAEQILE 886


>gi|288933924|ref|YP_003437983.1| alanyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290510997|ref|ZP_06550366.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|288888653|gb|ADC56971.1| alanyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289775990|gb|EFD83989.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 875

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/910 (43%), Positives = 563/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        G ++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GVSEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGAGFSFAVSDTQKYGQAI-GHIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S +++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|329999040|ref|ZP_08303295.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|328538480|gb|EGF64595.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 875

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI +  +VTG     N   + RVI DH+RS +FL+ADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNK--SLRVIADHIRSCAFLVADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I        GA++F GYD L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ+  V+ DQTPFYAE+GGQ+GD 
Sbjct: 466 ----------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G G    ++D QK  + I  H   V  G L+   ++   +D   R+++ +NHSATH
Sbjct: 510 GELKGVGFSFAVSDTQKYGQAI-GHIGKVASGTLKVGDAVQADVDEARRQRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +   E++++ED VN  I +NL + T
Sbjct: 569 LMHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A ASGA AL G KY+DRVRV+ +     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    E  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         +I  V  +   ++ V+ K L++++D L+ ++ S I++
Sbjct: 744 KELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ + K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG + +   
Sbjct: 804 LATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTDASALP 861

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 862 AALASVKGWV 871


>gi|113461263|ref|YP_719332.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123132149|sp|Q0I426|SYA_HAES1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112823306|gb|ABI25395.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT]
          Length = 874

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/913 (42%), Positives = 547/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y  
Sbjct: 1   MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE + GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NYDID+F+ LI    ++TG K   N   + RVI DH+RS ++LIADG+
Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKDLTNK--SLRVIADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M +A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L ++ KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDEALINV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA+A S           + ++    G T F GY          
Sbjct: 418 R-IDEEGFEREMEVQRLRAQAASR------FGVDYNNVIRVEGTTTFEGYTEAET----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+  +G+ VE   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            GC I   +R  + D QK  + +F H   + +G L    ++   +D ++R + S+NHSAT
Sbjct: 508 RGCLIATNMRFDVKDTQKYGQ-VFGHIGTLIQGTLNVGQTINAVVDTEHRTKTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV+Q GS ++   LRFD    + I   +L  IE  VN  I  N  VV
Sbjct: 567 HLLHAALRQVLGTHVAQKGSLVSDTILRFDFAQPEAIRQEQLFEIECLVNQHIRANHLVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  ++A A GA AL G KY D VRVV +     G  S  LCGG HV  TGEI L  I
Sbjct: 627 TEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES+I AG+RR+EA+TG+ A + L  Q + L   A  LK    ++V +++++ ++ +K 
Sbjct: 682 VSESAIAAGVRRVEAVTGEAAINWLQQQQQILMQSADLLKSDANSLVEKIQQLQDKAKKT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  +I  V+ +   +  +D K L+ ++D L+ ++ S +I
Sbjct: 742 EKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             V    E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFV-TKTEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENI 859

Query: 886 DQAIAGVASFLKK 898
            +A+     +L K
Sbjct: 860 SKALTVCNEWLHK 872


>gi|95928611|ref|ZP_01311358.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
 gi|95135401|gb|EAT17053.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684]
          Length = 880

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/909 (40%), Positives = 548/909 (60%), Gaps = 42/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+++F+K+GH  +PSSSLIP NDPTL+FTN+GM  FK++F G E   Y+ 
Sbjct: 1   MLTANEIRARFIQYFEKHGHRAVPSSSLIPHNDPTLLFTNAGMNQFKDLFLGAETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+  W+ LTKE  L
Sbjct: 61  ATSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKQDAIRFGWEFLTKEMKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               L+++V+++D+EAF +W+   G+  ++I+R+   DNFW+M +TGPCGPCSEI  DQG
Sbjct: 121 PVEDLWVSVFEDDDEAFNIWRDEIGVREERILRLGEKDNFWAMGDTGPCGPCSEIHIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++E+WNLVFMQ+E+        LPK SIDTGMGLER+  V+Q
Sbjct: 181 EEMTCGPDCALGVCDCDRFLELWNLVFMQYERSADGTLSPLPKPSIDTGMGLERITAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +NYD D  + +I   EQ+ G  Y  N    V+ RVI DH R+++FLIADG+LP+NEG
Sbjct: 241 GVKSNYDTDSLRAIIAHIEQLAGKTYGDNEDADVSMRVIADHSRATAFLIADGVLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRA  +A++LG+ EP++      +   M  AYPEL +    + + +++E+E
Sbjct: 301 RGYVLRRIMRRAARHAKMLGFDEPVLFKTATFVMESMKDAYPELEERLDYVAKVVKNEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  GL +L+  +  L      ++ GD  F+LYDT G P+D+  DI+  +    +D
Sbjct: 361 RFIQTLGNGLRILNEEIDTLKSKGQTVIPGDTVFRLYDTFGFPVDLTADIVEGQNFT-LD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +E+QR +AR +  G G      ++  L E+  + +F GYD             
Sbjct: 420 EAGFETCMEQQRQKARENWKGSGEEGIGAVYKQLAEQGMSCEFTGYDKCDD--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G+ VE   +G+ VE++   TPFY E+GGQ GD G  
Sbjct: 471 --------------FGTVLALLKDGQQVESVSAGETVEIITSITPFYGESGGQSGDGGTL 516

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G++  I++  K    + VH A ++ G L    +  L +D + R   ++NHSATH+L 
Sbjct: 517 TAEGVKATISETLKPLPNLHVHVATIDEGTLSVGQAAELHVDVEQRTACALNHSATHILQ 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  +LG HV Q GS +TPD LRFD  H   +T  E++ +E+ VN  I +N  V+T +M
Sbjct: 577 AVLCEVLGDHVKQAGSQVTPDRLRFDFIHFSALTPEEIQQVEEKVNQRIRENAGVMTDVM 636

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N +DA+ +GA AL G KY D VRVV +     G  S  LCGGTHVS+TG I L  IV E+
Sbjct: 637 NTDDAVKAGATALFGEKYGDSVRVVRM-----GDFSMELCGGTHVSATGNIGLFKIVQEA 691

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A S +  Q++ +  LA+ +K     +  R++++ E  ++L+   
Sbjct: 692 GIAAGVRRIEAVTGSGALSTVREQEQMIGDLAALVKSDPSQLATRLKKLMEHQKELERQV 751

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +  + +L+ +           I +V  ++  I  +D K+L+   D L+ ++QSG+I+L G
Sbjct: 752 STLEDRLSADRAGNLMDQVQTIDNVKLLAVRIDNLDGKQLREQADKLRDQLQSGVIVLGG 811

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K ++L+ VT+DL +   A +L +  A+++ GG GGGRP +AQ+GG    + + A+
Sbjct: 812 V-NDGKVALLVSVTKDLTNTLKAGNLIKPLAEMV-GGRGGGRPDLAQAGGSQPEQLNNAL 869

Query: 890 AGVASFLKK 898
              A  + +
Sbjct: 870 EAAAGIVGE 878


>gi|254505107|ref|ZP_05117258.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222441178|gb|EEE47857.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 885

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/907 (50%), Positives = 617/907 (68%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+ FL++F+ N HE++ S  L+P NDPTLMF N+GM  FKN+FTG E   Y  
Sbjct: 1   MTGVNEIRSAFLDYFKANDHEVVDSGPLVPRNDPTLMFANAGMNQFKNVFTGLETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AVTAQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY ED++A   WKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 PKDRLLVTVYAEDDDAAVFWKKIAGLSDDKIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PG   E+G+R++EIWNLVFMQ+EQ     R  LP+ SIDTGMG+ER+ATVLQ 
Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQYEQTPD-SRLDLPRPSIDTGMGIERLATVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+ LI ASE  TG++  G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 240 VHNNYDIDLFRALISASEHETGVEASGDALSSHRVISDHLRSTSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  +PLM  L+P+L  EMG AYPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELTRAEALITETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L     L+G+ AFKLYDT+G PLD+ QD L  R +  +D   F+
Sbjct: 360 KTLERGLGLLDTATEDLTAGGQLDGETAFKLYDTYGFPLDLTQDALRVRDIT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   TE +WF++KEKYGAT F+GY+                  
Sbjct: 419 AAMERQKAEARAAWSGSGGAATEAVWFAMKEKYGATDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      IV  +        E  +G+   VV +QTPFY E+GGQ+GDTG     G+
Sbjct: 462 ------EVAEGIVAGLAADDAETNELKAGETGFVVLNQTPFYGESGGQVGDTGVMTAPGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QKKA+G+FVH   V+ G +  E++L L +D+  R  +  NH+ATHL+H AL  
Sbjct: 516 KITVTDTQKKADGLFVHVVTVDEGTVTPELALELKVDHDRRSAVRSNHTATHLVHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS ++PD LRFD +H KP++  EL  +E   N+II QN  V TR+M  +DA
Sbjct: 576 VLGTHVAQKGSLVSPDRLRFDFSHPKPMSDDELAIVETFANEIILQNASVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I +GA AL G KY + VRVVS+       + G  +S  LCGGTHV  TG+I L+ +VSE 
Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGDKTGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG  AR++L  QD++L+ +A  LKV  G+V  RV ++ EE RKL+   
Sbjct: 696 AVAAGVRRIEALTGAEARTYLDTQDKRLREVAGILKVGTGDVPSRVAQLVEERRKLEKEL 755

Query: 775 --AKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A++KL +         + D      M+  +  ++ K+LK + D  + ++ SG+++L+ 
Sbjct: 756 ADARKKLAMGGGADGGTPVKDAGSFKLMARTVEGINPKDLKGMADEAKTQLGSGVVVLIN 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++++ KA+++  VT DL ++ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G+KA+ A+
Sbjct: 816 VAEDGKAAIVTAVTRDLTEKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGSKAESAV 875

Query: 890 AGVASFL 896
           + + + L
Sbjct: 876 SAIEAHL 882


>gi|332185154|ref|ZP_08386903.1| alanyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332014878|gb|EGI56934.1| alanyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 882

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/904 (48%), Positives = 595/904 (65%), Gaps = 32/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR  FL++F   GH+++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSTNDIRRGFLDYFGSQGHQIVPSAPLVPQNDPTLMFVNAGMVPFKNVFTGLETRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTK + +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKVWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL   KIIRI T DNFW+M E GPCGPCSEIF+D G
Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPDHKIIRIPTKDNFWAMGENGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQFEQ+  +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIYGGPPGSPEEDGDRFVEIWNLVFMQFEQEANEIVGELPKKSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T  K E     +HRVI DHLRS+ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASCELTHTKAEDGQKASHRVIADHLRSAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+PAL  EMG+AYPEL++A+ LIE TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPALVAEMGAAYPELVRAQPLIEATLKQEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD   + +     L G+ AFKLYDT+G P D+ +D L A+ L+ +D   F+
Sbjct: 361 QTLDKGLKLLDEATAGMAPGATLAGETAFKLYDTYGFPYDLTEDALRAQNLS-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+  ARA   G G+  ++ +WF + E+ G+T+F+GY                   
Sbjct: 420 AAMAEQKRAARAAWKGSGAKASDDVWFDIAEETGSTEFLGY------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                ++     V A+V+ G  V+ A +G  V ++ +QTPFY E+GGQ+GD+G    D G
Sbjct: 461 ----ASDTGEGEVLALVKDGARVDSAGAGDTVSIIVNQTPFYGESGGQVGDSGTISSDTG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           ++  +TD  K+   +FVH+A ++ G ++   S+ L ID   R  +  NHSATHLLH AL 
Sbjct: 517 LKAVVTDTSKQLGRVFVHNAEIQEGGIKVGDSVKLAIDTTRRAAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + P+ LRFD +    +T+ ++  +E  VN+ +  N PVVTR+M  ++
Sbjct: 577 QRLGTHVAQKGSLVAPERLRFDFSQPVGMTADDIAEVEAKVNEQVRGNGPVVTRLMTPDE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY D VRVVS+  +  G +S  LCGGTHV++ GEI +  IVSE ++ +
Sbjct: 637 AIEMGAMALFGEKYGDEVRVVSMGEDADGTYSLELCGGTHVNALGEIGVFKIVSEGAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+EA+TG+ AR++L  +D+ LK+ A+ LK +   V GR+  + EE R+L+   A+ K
Sbjct: 697 GVRRVEALTGEGARAYLSHRDDMLKAAAATLKTTPDEVPGRIAALVEERRRLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +   +        +I DV F+  ++   ++K L+  +D  ++++    + ++    
Sbjct: 757 KALAMGGGAGGAAAGPEQIGDVAFIGQVLDGFEAKGLRGAVDDAKQRLGGSGVAVMVAVN 816

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +ASV + VT+DL  + NAVDL R +   LGG GGGGRP MAQ GGP+G K  +A+  V
Sbjct: 817 DGRASVAVGVTDDLTAKHNAVDLLRKAVAALGGQGGGGRPDMAQGGGPDGTKGAEALQAV 876

Query: 893 ASFL 896
              L
Sbjct: 877 RDAL 880


>gi|238784094|ref|ZP_04628108.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238714940|gb|EEQ06938.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 875

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 555/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLITAVADVTGATDFSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELNKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + G+ V+E  +G++  VV +QTPFY E+GGQ+GDT
Sbjct: 463 -------------HVHQQATVTALFRNGQAVDEIHAGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFVVADTQKYGQAI-GHLGKLTHGTLRVNHSIDAQVDATRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLP+ T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+S+     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKADTHNLADKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   +  V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|325983477|ref|YP_004295879.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532996|gb|ADZ27717.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 865

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/904 (42%), Positives = 541/904 (59%), Gaps = 49/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FLEFF+  GH ++ SS L+P NDPTL+FTN+GMV FK+IF GQ+K  Y  
Sbjct: 1   MKS-SEIRQKFLEFFESQGHTVVSSSPLVPGNDPTLLFTNAGMVQFKDIFLGQDKRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWD LT   ++
Sbjct: 60  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILFAWDFLTHTLNI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++TVY ED+EA  +W    G+   +I+RI T DNFW M +TGPCGPCSEIF+D G
Sbjct: 120 PHEKLWVTVYAEDDEAAGIWLNEVGVEPSRIVRIATMDNFWQMGDTGPCGPCSEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS   +G+RYIEIWNLVFMQ+ + +      LPK S+DTGMGLER++ V+Q 
Sbjct: 180 ADVQGGPPGSADADGDRYIEIWNLVFMQYNRDSAGVLHPLPKPSVDTGMGLERISAVMQH 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI+A+ +VT      +N  + +VI DH+R+ SFLIADG++P +EGRGY
Sbjct: 240 VHSNYDIDLFQSLIKAAARVTNTSNLNDN--SLKVIADHIRACSFLIADGVIPGSEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L   MG AYPEL  AK  +   L  E+ERF 
Sbjct: 298 VLRRIIRRAIRHGYKLGQKQPFFHQLVEDLDQVMGQAYPELTAAKARVAAVLLQEEERFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ +L+  LS     +IL+G+ AF+LYDT G P+D+  DI   RG+  +D   F 
Sbjct: 358 ETLENGMQILETALSQ--NIQILDGETAFRLYDTFGFPIDLTADIARERGIT-VDYAGFE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+  QR +ARA S          +   ++     T F GY+ L+               
Sbjct: 415 QAMARQREQARAASK-------FTLQEGIEYSGSQTTFYGYETLQH-------------- 453

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+ +QG  V+   +G +  VV DQTPFYAE+GGQ+GD G  +    
Sbjct: 454 ---------EGQILALYKQGSAVDSIEAGDEAVVVLDQTPFYAESGGQVGDCGELLAANG 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD QK   G+F H   +  G L  + ++   ++ QNR  ++ NHSATHLLH AL  
Sbjct: 505 IFEVTDTQKIQAGVFGHKGKLHSGRLMIKDTVHAQVNAQNRISIANNHSATHLLHAALRE 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS +  +  RFD +H+ P+T+ ++++IE  VND I  N  V    M  +DA
Sbjct: 565 VLGTHVTQKGSLVDANRTRFDFSHNVPLTADDIRAIERLVNDQIRNNCIVEAATMKYDDA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I  GA AL G KY+D VRV+ +     G  S+ LCGGTHV   G+I L  IV+ES + AG
Sbjct: 625 IKRGAMALFGEKYSDVVRVIGM-----GEFSTELCGGTHVPQVGQIGLFKIVAESGVAAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRR+EA+TG+ A  ++  ++ +L  +A  LK +   V  ++ +I +  R  +   A+ K 
Sbjct: 680 IRRVEAVTGKAAIDYVQQREAQLLEIAQTLKANPQEVTQKIAQIIDNVRHTERELARLKT 739

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L              +  V  ++  +   D+K L+  +D L+ K+++  I+L     + 
Sbjct: 740 KLASSQGADLASQAQDVNGVKVLAVNLENADAKTLRETLDQLKDKLKTCTIVL-STVADG 798

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K +++  V+ DL DR  A +L    A+ + GG GGGR  MAQ+GG    +   A+ GV  
Sbjct: 799 KVTLIAGVSADLTDRIKAGELVNFVAQQV-GGKGGGRADMAQAGGTQPEQLPGALGGVKD 857

Query: 895 FLKK 898
           ++++
Sbjct: 858 WVER 861


>gi|209519489|ref|ZP_03268284.1| alanyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209500090|gb|EEA00151.1| alanyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 874

 Score =  974 bits (2517), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/911 (41%), Positives = 540/911 (59%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 KDKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LIQA+ + TG+   GNN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIQAAGRETGVTDLGNN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL QA+  + + L  
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGEAYPELAQAEQRVTDVLYQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIENGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F++A+  QR +ARA           K+   L+     T F GY+ +        
Sbjct: 419 -VDEPAFDEAMARQREQARAAGK-------FKMAQGLEYSGAKTTFHGYEEIVFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +GQ+  VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVDGASVQQVQAGQQAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANASTRFAVVDTLKVQADVVGHHGTLEQGTLKVGDIVKAEIDAMRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  +++ +E+ VN  +  N P + 
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M+ +DA+  GA AL G KY D VRV+ +        S  LCGGTHV+ +G+I    IV
Sbjct: 629 RVMSYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVNRSGDIGFFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  ++   + ++ + A+ LK     +  R+ ++ ++ + L+
Sbjct: 683 MEGGVAAGIRRVEAITGDNAVRYVQELEGRVNAAAAVLKAQPAELTQRIGQVQDQVKALE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +  K ++             +I  V+ ++  +   D K L+  +D L+ K++S  I+
Sbjct: 743 KELSALKSKMASSQGDELAGQAVEIGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + +  K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    +  
Sbjct: 803 LASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAQLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV ++++
Sbjct: 861 AALAGVKAWVE 871


>gi|296104368|ref|YP_003614514.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058827|gb|ADF63565.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 875

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/910 (43%), Positives = 564/910 (61%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF  LI+A  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLNNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L K + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+EEQR RAR  S G G+     I         A++F GY+ L        
Sbjct: 420 -VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYEALE------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           ++  V A+   G+ V+   +GQ   V+ D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------LTGKVTALFVDGKAVDSISAGQDAVVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+G    + D QK  + I  H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GELQGNGFSFSVNDTQKYGQAI-GHLGKLVSGSLKVGEGVQANVDEARRARIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV+Q GS +    LRFD +H + +  +E++++ED VN  I +NLP+ T
Sbjct: 569 LMHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A   GA AL G KY+DRVRV+S+     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 HIMDLDAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q ++L  +A  LK    N+  +V    +  R+L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGAIASLHAQSDQLHDIAQLLKGDTQNLGEKVRVALDRTRQLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   ++ V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 AALASVESWV 871


>gi|134282822|ref|ZP_01769525.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134245908|gb|EBA45999.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 874

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVL--LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +             + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDR 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|53719621|ref|YP_108607.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76812235|ref|YP_333216.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121601160|ref|YP_992755.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124386422|ref|YP_001026453.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126449388|ref|YP_001080272.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126451905|ref|YP_001065931.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|167001586|ref|ZP_02267381.1| alanine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167738941|ref|ZP_02411715.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816161|ref|ZP_02447841.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824533|ref|ZP_02456004.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167846068|ref|ZP_02471576.1| alanyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894639|ref|ZP_02482041.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167903047|ref|ZP_02490252.1| alanyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911280|ref|ZP_02498371.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919300|ref|ZP_02506391.1| alanyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423601|ref|ZP_03455102.1| alanine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226192959|ref|ZP_03788571.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242315165|ref|ZP_04814181.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254180068|ref|ZP_04886667.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188523|ref|ZP_04895034.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198350|ref|ZP_04904772.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254261778|ref|ZP_04952832.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297905|ref|ZP_04965358.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358720|ref|ZP_04974993.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|59798504|sp|Q63TF9|SYA_BURPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123599400|sp|Q3JT87|SYA_BURP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830001|sp|A3MJ36|SYA_BURM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830002|sp|A2S3D4|SYA_BURM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830003|sp|A1V3F2|SYA_BURMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830004|sp|A3NUB0|SYA_BURP0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52210035|emb|CAH36008.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|76581688|gb|ABA51163.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229970|gb|ABM52488.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124294442|gb|ABN03711.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126225547|gb|ABN89087.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242258|gb|ABO05351.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|148027847|gb|EDK85868.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157807006|gb|EDO84176.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936202|gb|EDO91872.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|169655091|gb|EDS87784.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210608|gb|EDU07651.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393459|gb|EEC33480.1| alanine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225935049|gb|EEH31024.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242138404|gb|EES24806.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243062691|gb|EES44877.1| alanine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254220467|gb|EET09851.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 874

 Score =  973 bits (2516), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVL--LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +             + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|238799432|ref|ZP_04642859.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238716719|gb|EEQ08608.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 875

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/911 (43%), Positives = 555/911 (60%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+++W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLITAVADVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL   + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKHQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD          
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E   G++  VV +QTPFY E+GGQ+GDT
Sbjct: 463 -------------HVHQQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFAVADTQKYGQAI-GHLGKLTHGTLRVNHSIDAQVDVTRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +NLP+ T
Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+S+     G  S+ LCGG H S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q + L+ +A  +K    N+  +V  + +  + L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALVHQQSDLLQDVAHLVKGDTNNLTEKVRAVLDRSKMLE 743

Query: 772 LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q           S   ++ V  +   +  V+ K L++++D L+ ++ S II+
Sbjct: 744 RELQQLKDQQAAQESASLSSSAKLVSGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 LATTA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV-GGKGGGRPDMAQAGGTDVQALP 861

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 862 SALASVEAWVE 872


>gi|163746280|ref|ZP_02153638.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380165|gb|EDQ04576.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 885

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 440/892 (49%), Positives = 566/892 (63%), Gaps = 39/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F   GH+++PSS L+P NDPTLMFT +GMV FKN+FTG E   Y  
Sbjct: 1   MKTLNEIRSTFLNYFDAQGHQVVPSSPLVPRNDPTLMFTAAGMVQFKNLFTGVETRNYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AWDLLTKEF +
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWDLLTKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY  DEEA K+WK  +GL  ++IIRI T+DNFWS   TGPCGPC+EIF+D G
Sbjct: 121 DPNRLLVTVYHTDEEAVKIWKAHTGLPDERIIRIATDDNFWSAGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTREPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 TNDNYATDLMRSLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P+L  +MG+AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGVKDPLMHQLVPSLVQQMGAAYPELGQAQSLIRETLLLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L +   L G+ AFKLYDT G PLD+ QD L  +G   +D   FN
Sbjct: 361 QTLDRGLKLLDDELHGLPEGATLPGEAAFKLYDTFGFPLDLTQDALREKG-RAVDTDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q+++ARA   G G      +WF + +K G T+F+GYD                  
Sbjct: 420 TAMEAQKAKARAAWAGSGEAADATVWFDVADKSGVTEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+VQ  + VE A +G  V+V  +QTPFYAE+GGQ+GDTG       
Sbjct: 463 ------ESAEGQIVALVQGSDKVEAASAGSDVQVALNQTPFYAESGGQVGDTGVIRTQTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+FVH   V  G ++   S VL +D   R  +  NHSATHLLH AL  
Sbjct: 517 IVNVTDTRKSA-GVFVHFGHVIEGEVKPGQSAVLEVDRARRSAIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS    D LRFD +H+K +T  EL  +E  VND + QN PV TRIM  +DA
Sbjct: 576 ALGDHVSQRGSLNAHDRLRFDFSHAKGLTPEELTQVEREVNDYVRQNTPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-------GVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+   +G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RAMGAQALFGEKYGDEVRVVSMGQLEGSGKGSNKSTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  +G+RRIEA+TG  A + L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSASSSGVRRIEALTGTEALAWLRDQEAALSRVAAELKTSTADVPDRVRALLDERRSLSN 755

Query: 771 QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L +   +       ++  V F+  ++S V  K+L  ++D  + KI SG ++L
Sbjct: 756 EVAQLRRELAMSGGSAAAPEAREVNGVKFVGQVLSGVTGKDLPGLVDEHKAKIGSGAVLL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +      KA+V   VT+DL DR +AVD+ + +   LGG GGGGRP MAQ GG
Sbjct: 816 IA-DTGGKAAVAGGVTKDLTDRLSAVDMVKAAVAELGGKGGGGRPDMAQGGG 866


>gi|167628656|ref|YP_001679155.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|205830065|sp|B0TFY7|SYA_HELMI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167591396|gb|ABZ83144.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 883

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/907 (42%), Positives = 555/907 (61%), Gaps = 43/907 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FLE+F++ GH ++ SSSL+P NDPTL+F+N+GM  FK++F G EK  Y   T
Sbjct: 4   TGNRVRQLFLEYFEQKGHTIVASSSLVPHNDPTLLFSNAGMNQFKDVFLGFEKRPYLRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L +
Sbjct: 64  TSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRYAWEFLTDVCGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY TVY +D+EAF LW+ + GL   +I+R+   DNFW+M +TGPCGPCSEI  D+GE 
Sbjct: 124 DKLYATVYLDDDEAFALWRDMIGLPEARILRLGEKDNFWAMGDTGPCGPCSEILIDRGEH 183

Query: 183 IPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +       +    + +R++EIWNLVFMQ+ +        LP+ SIDTGMGLER+ +VLQ+
Sbjct: 184 LRCKAEECAIGKCDCDRWLEIWNLVFMQYNRDENGTMTPLPRPSIDTGMGLERVTSVLQK 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +NYD DL + LI   EQ+ G  Y  ++     RVI DH+RS +FLI DG+LP+NEGRG
Sbjct: 244 VGSNYDTDLLRPLIAFVEQLCGQVYHRDDRGFPFRVIADHIRSCTFLITDGVLPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + ++LG  +P M  ++P +   MG AYP++ + +  + + ++ E+ERF
Sbjct: 304 YVLRRILRRAVRFGKVLGIDKPFMYEIVPVVVELMGEAYPDIREKQDFVCKVIKIEEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL  G+ +   +++ + ++   +L G  AF LYDT+G PLD+ +DI    GL  +D  
Sbjct: 364 HETLHDGMRIAADMVAKVKQEGGNVLPGKQAFTLYDTYGFPLDLAEDIAEENGLT-VDKD 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F QA+E QR RARA       G   ++W  L ++ G T F GY    G           
Sbjct: 423 GFQQAMEAQRERARAARQDTAYGAGMELWAELLQQLGPTVFTGYGRTSG----------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S+VKAIV     V EA +G  V+VV  +TPFYAE+GGQ+GD+G    
Sbjct: 472 ------------ESVVKAIVAGATRVTEAGAGTAVQVVLAETPFYAESGGQIGDSGLLRA 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               +++ D +K A G+ VH  +V  G+ +    +V  ++   R  ++ +HSATHL+H A
Sbjct: 520 GDAVVRVEDTKKMAGGLHVHFGVVAEGVFKEGDQVVAEVESARRLAIARHHSATHLMHKA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TPD LRFD +H  P+T  E   IE  VN  + Q LPV     + 
Sbjct: 580 LKEVLGEHVNQAGSLVTPDRLRFDFSHFSPLTRDEWNRIEAAVNRAVFQALPVEVFETSI 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY DRVRVV +     G +S  LCGGTH+ +T ++ L  ++SES I
Sbjct: 640 DEAKAMGATALFGEKYGDRVRVVRM-----GNYSMELCGGTHLDNTSQVGLCKLLSESGI 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ A ++L  Q+E ++ LA  LKV    V  RV+ +  + R+ +    +
Sbjct: 695 GAGLRRIEAVTGEAALAYLNEQEETVRMLAEKLKVPAAEVTNRVDSLQAQLREKEREMEQ 754

Query: 777 ---RKLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              R  +  ++DL     +I  V  ++  +   D   L+S+ D L++K+ SG+++L  ++
Sbjct: 755 LLSRLAKYQIDDLLAGKEEINGVTVLAAKVQAPDMDALRSMSDLLKEKLGSGVLILGAVA 814

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + K +++   T+D++ R  +A +L + +AKV GGGGG GRP MAQ+GG + ++   A+ 
Sbjct: 815 GD-KVNLVAAATKDIVGRGVHAGNLVKEAAKVCGGGGG-GRPDMAQAGGKDPSRLSDALE 872

Query: 891 GVASFLK 897
                LK
Sbjct: 873 AAKKLLK 879


>gi|294141935|ref|YP_003557913.1| alanyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293328404|dbj|BAJ03135.1| alanyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 874

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/909 (42%), Positives = 559/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++RT FLE+F KNGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRTAFLEYFHKNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  + +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITYAWNFLTQELKIPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D EA+ +W K  G+S D +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGVSEDNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG   E+G+R+IEIWN+VFMQ+ +Q+  +   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGDMLALPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +    N   + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTDLENK--SLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A   L++ + ++ ++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLILVMGDAAKGLVETQDIVVKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNALT-GKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQR RA+A       G     +    +    T+F GY  L  +        
Sbjct: 420 EAGFELAMSEQRKRAQAA------GQFATDYNDSLKIDEETEFSGYLDLVSN-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + AI ++GE V E  +G++  VV D TPFY E+GGQ GD+G  
Sbjct: 466 ---------------AKITAIYKEGESVTEINAGEEAVVVLDTTPFYGESGGQSGDSGTL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G    + D QK  + I  H   ++ G L    SL  ++D   R++  +NHS THLLH
Sbjct: 511 SAAGFDFIVKDTQKYGQAI-GHIGTLKTGSLSLGQSLEASVDKALRQRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + +   EL+++ED VN  I  N  +  ++M
Sbjct: 570 AALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNTQIRCNHELTAQVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 TIDAAKDKGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++ GQ  +L   A  LK   G+VV +++   +  ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAGQKSELDKAAKLLKADAGSVVTKLKAQLDRTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             +I  V  +   +  V+   L+ ++D L++K+ SGI++L G
Sbjct: 745 SQLKDKLAAATSADLAGEAQEINGVKVLIKKLDGVEPGALRGLLDELKQKLGSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVANIAAQV-GGKGGGRPDMAQAGGSKPENLDAAL 862

Query: 890 AGVASFLKK 898
             VAS+L++
Sbjct: 863 NQVASWLQE 871


>gi|307825703|ref|ZP_07655920.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307733280|gb|EFO04140.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 870

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/903 (41%), Positives = 545/903 (60%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +RT FLEFF++ GH + PSSSLIP NDPTL+FTN+GMV FK++F G++   Y   
Sbjct: 4   MTSAQLRTAFLEFFRERGHAIQPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDHRDYNKA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AWD LTKE ++ 
Sbjct: 64  ATSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWDFLTKELEIP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITV+DED EA K+W    G+S  +  RI   DNFWSM + GPCGPC+EIF+D G 
Sbjct: 124 AEKLWITVFDEDSEAEKIWLDDVGVSPVRFSRIGAKDNFWSMGDVGPCGPCTEIFYDHGA 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS  E+G+RYIEIWNLVFMQ+++        LPK S+DTGMGLER+A VLQ  
Sbjct: 184 DIAGGPPGSPDEDGDRYIEIWNLVFMQYDRSADGSLTPLPKPSVDTGMGLERIAAVLQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ L++A+ ++ G      +  + RVI DH+RS +FLIADG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQKLLKAAAELAGTSDLTQS--SLRVIADHIRSCAFLIADGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRA+ +   LG  +     L+  L  EMG A+PEL  A+  +E  L+ E+ERF +
Sbjct: 302 VRRIIRRAIRHGYRLGIRDVFFYKLVAPLAEEMGEAFPELKAAQEQVERVLKKEEERFAE 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+ +L+  ++ + +  ++ GD  F+LYDT+G P+D+  D      L  +D   F  
Sbjct: 362 TLEQGMKILEACVAKM-EGSVIPGDTVFQLYDTYGFPVDLTADFARENNLT-VDHAGFET 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+  QR RAR+ S   G+   + I          T+F GYD L                 
Sbjct: 420 AMSAQRERARSAS-SFGADYDQDIKLD-----AQTEFTGYDHLDDQVH------------ 461

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      +  + ++G+ V+    G++  V+ D+TPFYAE+GGQ+GD G    DG  
Sbjct: 462 -----------IIGLYKKGQPVDSLEDGEEGVVILDKTPFYAESGGQIGDCGKIEADGAV 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TD QK+   +F+H   +  G L         +   +R    +NHSATHLLH AL  +
Sbjct: 511 FEVTDTQKQGGNLFLHKGKLLTGTLTNGQLCDARVSAADRTATELNHSATHLLHAALRQV 570

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P+ LRFD +H +P+T++E+ ++E  VN+ I  N PV  ++M ++DA+
Sbjct: 571 LGDHVAQKGSLVNPERLRFDFSHFEPVTASEISTVERIVNEQIRANNPVSAQVMAKDDAV 630

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+ +     G  S+ LCGGTHV   G+I    I++E+ + AG+
Sbjct: 631 KAGAMALFGEKYGDEVRVLKI-----GEFSTELCGGTHVERAGDIGCFKIINETGVAAGV 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG      + G+D  L S+A  +K +      +VE++ E+ R L+    +   +
Sbjct: 686 RRIEAVTGGGCIEWIAGRDHALASIAGLVKSAPEKTPEKVEQLIEKNRLLEKQLERLNAK 745

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              +  +  ++  +  VD K LK ++D L+ K+ S  I+L  +  + K
Sbjct: 746 LASSAGNELGAQAVDVGGIKVLAVKLDGVDPKSLKDMVDQLKNKLGSAAIVLAVVDGD-K 804

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+D + R  A DL    A  + GG GGGRP MAQ+GG + +    A+A V ++
Sbjct: 805 VSLIAGVTKDQMGRIKAGDLVNFVATKV-GGKGGGRPDMAQAGGNDPSGLADALAQVPAW 863

Query: 896 LKK 898
           +K+
Sbjct: 864 VKE 866


>gi|261820431|ref|YP_003258537.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261604444|gb|ACX86930.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 875

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 546/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYNIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLFK LI A  +  G     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA  +  +LG T+     L+  L   MG A  EL + + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIDVMGPAAAELKKQQSVVEQAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F +TL+RGL LLD  + +L K + L+G+  F+LYDT+G P+D+  D+   RGL 
Sbjct: 361 KMEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETVFRLYDTYGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+  QR RAR  S G G       + SL      T F GY+  +       
Sbjct: 420 -VDEEGFESAMTAQRQRAREAS-GFGVD-----YNSLIRVDENTPFCGYEKTQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V++  +G    V+ ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QQAKVIALYHNGNAVDQIAAGDDAVVILNETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G+   + D QK  + I  H   + +G LR   S+   +D Q R ++ +NHSATH
Sbjct: 510 GELKNAGVSFAVQDTQKYGQAI-GHVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H++ +   +++ +ED VN  I +NL V T
Sbjct: 569 LLHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRLVEDIVNAQIRRNLTVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA A GA AL G KY+D VRV+++     G  S  LCGGTH + TG+I L  I+
Sbjct: 629 DVMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHANRTGDIGLFQII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA TG+ A S L  Q + L+ +A  LK    N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALE 743

Query: 772 LI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                    +   + +       ++  V  +   +  VD K L++++D L+ ++ S +I+
Sbjct: 744 KELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G + E + S++  VT+DL DR  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 804 L-GTATEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDALALP 861

Query: 887 QAIAGVASFL 896
            A+A V S++
Sbjct: 862 GALASVESWV 871


>gi|237811944|ref|YP_002896395.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|237502943|gb|ACQ95261.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346]
          Length = 874

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVL--LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +             + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDR 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|126441822|ref|YP_001058678.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|205830005|sp|A3N8K7|SYA_BURP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126221315|gb|ABN84821.1| alanine--tRNA ligase [Burkholderia pseudomallei 668]
          Length = 874

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVL--LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +             + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|159044191|ref|YP_001532985.1| alanyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|205830080|sp|A8LL20|SYA_DINSH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157911951|gb|ABV93384.1| alanyl-tRNA synthase [Dinoroseobacter shibae DFL 12]
          Length = 887

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/895 (49%), Positives = 574/895 (64%), Gaps = 41/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL FF  +GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MPSLNEIRSTFLNFFGGHGHEIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRDYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EA ++WKK +GLS D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLVTVYHTDDEAAEIWKKHAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTREPLPKPSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 SHDNYDTDLFKTLIEASAHATSVDPYGDKNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG A+PEL +A+ LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMYRLVPALVGQMGQAFPELGRAQALIEETLMLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ + +   L G+ AFKLYDT+G PLD+ QD L  +G   ++   F+
Sbjct: 361 QTLDRGLKLLDEAVADVPEGGALPGETAFKLYDTYGFPLDLTQDALREKG-RAVETEGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q+++ARA   G G    E IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMADQKAKARAAWAGSGETADESIWFDLAETHGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G  V +   G+   +V +QTPFYAE+GGQ+GD+G  +    
Sbjct: 463 ------EVAEGQVLALVKDGAQVAQLAEGETGWMVLNQTPFYAESGGQVGDSGGYLKSNG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              I D QK+  G+F H    +   L+    L + +D   R  +  NHSATHLLH AL  
Sbjct: 517 SGAIHDTQKR-NGLFAHKVTPKAQPLKAGDVLEMRVDPARRTAIRANHSATHLLHEALRQ 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS    D LRFD +HSK +T  EL+ +E  VN  I QN PV TRIM  + A
Sbjct: 576 ALGAHVAQRGSLNAADRLRFDFSHSKALTLEELQKVEAEVNAYIRQNSPVETRIMTPDAA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  +        G  +S  LCGGTHV  TG+I +   V 
Sbjct: 636 RDLGAQALFGEKYGDEVRVVSMGRQSGSGKGVSGETYSLELCGGTHVKQTGDIGVFVTVG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E++  +G+RRIEA+TG+ A ++L  QD +L  +A+ LK    +V  RV  + +E + LQ 
Sbjct: 696 ETASSSGVRRIEALTGEDAFAYLSAQDYRLAEVAASLKAQAADVPERVRSLLDERKALQN 755

Query: 773 IHAKRKLQLNV-------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +              +A V F++  +S V  ++L S++D  + ++ SG I
Sbjct: 756 EVAQLRRELAMAGGGQGTAAPEAEAVAGVPFLAQSLSGVSGRDLPSLIDEHKARLGSGAI 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +L+      KA+V   VT DL DR +AVDL + +   LGG GGGGRP MAQ GG 
Sbjct: 816 LLIA-DTGGKAAVAAGVTADLTDRLSAVDLVKAAVAELGGKGGGGRPDMAQGGGK 869


>gi|27262306|gb|AAN87434.1| Alanyl-tRNA synthetase [Heliobacillus mobilis]
          Length = 883

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/907 (43%), Positives = 558/907 (61%), Gaps = 43/907 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FLE+F++ GH ++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y   T
Sbjct: 4   TGNRVRQLFLEYFEQKGHTVVASSSLVPHNDPTLLFTNAGMNQFKDLFLGYEKRPYVRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L +
Sbjct: 64  TSQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTDVVKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y +DEEA +LWKK  G+  ++IIR+   DNFWSM +TGPCGPCSEI  D+GE 
Sbjct: 124 DKLYATIYLDDEEAHELWKKEIGVPEERIIRLGEKDNFWSMGDTGPCGPCSEILIDRGEH 183

Query: 183 IPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +  G    +    + +R++EIWNLVFMQF +  +     LPK SIDTGMGLER+ +VLQ+
Sbjct: 184 LRCGAEECAIGKCDCDRWLEIWNLVFMQFNRDEQGVMTPLPKPSIDTGMGLERITSVLQD 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +NYD DL + LI   EQ++G +Y  ++     RVI DH+RS +FLI DG+LP NEGRG
Sbjct: 244 VPSNYDTDLLRPLITYVEQLSGKEYHRDDRGFPFRVIADHIRSCTFLITDGVLPGNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + +++G  +P M  ++P +   MG AYPE+ + +  +++ ++ E+ERF
Sbjct: 304 YVLRRILRRAVRFGKVIGIEKPFMYQIVPVVVELMGEAYPEIKEKQDFVQKVIKIEEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL  G+ +   +++ + +D   +L G  AF LYDT+G PLD+ +DI    GL  +D  
Sbjct: 364 HETLHEGMRIAADIVAKVKEDGGGVLPGRQAFTLYDTYGFPLDLAEDIAEENGLT-VDKD 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+E QR RARA       G   +IW  L  K G T F GY  L G           
Sbjct: 423 GFAAAMEAQRERARAARQDTSYGAGMEIWADLLNKLGPTAFTGYGQLSG----------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S + AIV   E V EA  G  V+VV  +TPFYAE+GGQ+GDTG    
Sbjct: 472 ------------QSQLLAIVSGPEQVAEASVGTAVQVVLAETPFYAESGGQIGDTGYIRT 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D   ++I D +K A G+FVH  +VE G  +   ++   +    R+ ++ +HSATHLLH A
Sbjct: 520 DKAIIRIDDTKKMAGGLFVHVGVVEEGTFQAGETVTAEVTGLRRQAIARHHSATHLLHRA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +T D LRFD +H  P+T  E K IE++VN  + ++LPV       
Sbjct: 580 LKDVLGEHVNQAGSLVTGDRLRFDFSHFTPLTREEWKQIEESVNRQVFRSLPVEVFEATL 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A GA AL G KY D VRVV +     G +S  LCGGTH+ +T +I L  +VSE  I
Sbjct: 640 DEAKAMGATALFGEKYGDHVRVVRM-----GDYSMELCGGTHLQNTAQIGLFKLVSEGGI 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RR+EA+TG+ A  +L  Q+E ++ LA  LKV   +V  RVE +  + R+ +    +
Sbjct: 695 GAGLRRLEAVTGEAALDYLNEQEEIVRGLAEKLKVPPVDVAHRVETLQSQVREKEREIEQ 754

Query: 777 RKLQLN---VEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              +L    VEDL     +I+ V  ++  +   D   L+ + D L++K+ SG+++L  + 
Sbjct: 755 LLARLAKYQVEDLLANREEISGVQVLAAKVQAPDMDALRQMSDLLKEKMGSGVLILGSVV 814

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            + K +++   T+D++ R  +A +L + +AK  GGGGG GRP MAQ+GG + +K  +A+ 
Sbjct: 815 GD-KVNLVASATKDIVGRGVHAGNLIKEAAKTCGGGGG-GRPDMAQAGGKDPSKLAEALD 872

Query: 891 GVASFLK 897
                LK
Sbjct: 873 AAKKLLK 879


>gi|113868727|ref|YP_727216.1| alanyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123133735|sp|Q0K823|SYA_RALEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113527503|emb|CAJ93848.1| Alanyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 874

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/910 (42%), Positives = 537/910 (59%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR+ FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKVSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK + L 
Sbjct: 61  TSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILYAWELLTKTYQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ A++I+RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIE+WNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+A+ + T +     N  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQALIKAAARETHIDNLNQN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    ++  L  +MG AYPEL +A+  + E L++
Sbjct: 299 NEGRGYVLRRIIRRAIRHGYKLGQKTPFFHKMVADLVEQMGQAYPELAEAQSRVTEVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +LD  L+   L   + L+G++AFKL+DT G PLD+ QD+   + + 
Sbjct: 359 EEERFFETIENGMSILDAALADLKLKGGKTLDGELAFKLHDTFGFPLDLTQDVCREQEI- 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           G+D  +F+ A+  QR +ARA      +         L+     T F GY+ L   +    
Sbjct: 418 GVDEAAFDAAMNRQREQARAAGKFKMAAG-------LEYTGDKTVFHGYEKLELPQ---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V     GQ   VV D TPFYAE+GGQ GD 
Sbjct: 467 ------------------ARVTALYVDGAAVNAMQPGQTGVVVLDNTPFYAESGGQAGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD  K    +F H   +E G L+   ++   +D Q R +   NHSATH
Sbjct: 509 GVLKAGNAVFAVTDTTKIQADVFGHQGTLEGGALKVGDAVSAQVDAQRRARTVRNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD +H+  +T  +++ +E+ VN  I +N     
Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDEQIRRVEEIVNAEILRNDDTHA 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA+ SGA AL G KY D VRV+S+        S  LCGGTHV  TG+I L  IV
Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIG------TSKELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  + AGIRR+EAITG  A  +L G D +L   A+ LK     +V R+ ++ ++ R L+
Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQGLDARLNEAAAVLKAQPSELVPRIGQVQDQVRALE 742

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L              I  +  ++  +   D K L+  MD L+ K++S  I+
Sbjct: 743 KELERLKSKLAASQGDELAAQAVDIKGLKVLAAQLDGADVKTLRETMDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +S + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LGAVS-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFL 896
           QA+AGV  ++
Sbjct: 861 QALAGVGEWV 870


>gi|167719939|ref|ZP_02403175.1| alanyl-tRNA synthetase [Burkholderia pseudomallei DM98]
          Length = 874

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 535/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYGIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVL--LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +             + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    K  
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|260913378|ref|ZP_05919859.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632609|gb|EEX50779.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 874

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 542/912 (59%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHTKGHQIVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   W+ LT     
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +L++TVY+ D+EA+ +W K  G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+ID+F+ LI    ++TG K   N   + RV+ DH+RS ++LIADG+
Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKDLTNK--SLRVVADHIRSCAYLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  E     L+P L   M SA  ++ + +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIEAMASAGIQVKEKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L+ +  +E L+G VAFKLYDT+G P D+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLTLLDEALNQVKDNE-LSGKVAFKLYDTYGFPFDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA++ S           + ++    G T F GY          
Sbjct: 418 T-IDEAGFEREMEAQRLRAQSASQ------FGMDYNNVIRMDGVTVFEGY---------- 460

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +   + V A+  +G+ VE   +GQ   ++ D TPFYAE+GGQ+GD
Sbjct: 461 -------------TESETLAKVTALFCEGKPVERVEAGQSAVIILDNTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G     ++ D QK    +F H   V  G L     +   +D + R + S+NHSAT
Sbjct: 508 AGRLDGQDFAFEVEDTQKY-GRVFGHIGKVTIGSLAIGQLVNAVVDVERRHRTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG+HV Q GS ++   LRFD  H + IT  +L  IE  VN  I  N  + 
Sbjct: 567 HLLHAALRQVLGTHVVQKGSLVSDVALRFDFAHPEAITKEQLIEIERVVNQQIRANHVIQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T IM+ E A A GA AL G KY D+VRV+++     G  S  LCGG H   TG+I L  +
Sbjct: 627 TEIMDLEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCKV 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           ++E++I AG+RRIEAITG+ A + L  Q   L   A  LK    ++V ++ +  E+ +K 
Sbjct: 682 IAETAIAAGVRRIEAITGENAITWLQEQQALLAQSAELLKSDVNSIVDKINQQQEKLKKT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K ++ V+       +   I  V+ +   ++ VDSK L+ ++D L+ ++ S +I
Sbjct: 742 EKELLSLKEKVAVQAGSDLAKNAININGVSVIIQQLNGVDSKSLRVMVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               +  E K ++++ V+ DL  +  A +L  + A+ + GG GGGRP MA +GG    K 
Sbjct: 802 AFASVI-EGKVNLIVGVSNDLTAKVKAGELVNVLAQEV-GGKGGGRPDMAMAGGTQVEKV 859

Query: 886 DQAIAGVASFLK 897
            QA+   + +LK
Sbjct: 860 SQALLVGSEWLK 871


>gi|254448289|ref|ZP_05061751.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198262156|gb|EDY86439.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 868

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/904 (42%), Positives = 558/904 (61%), Gaps = 45/904 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ ++IR  FL++F   GH ++PSSSL+P  D TL+FTN+GMVPFK++F GQE+  Y  
Sbjct: 1   MTSSANIRKQFLDYFASKGHAVVPSSSLVPAGDDTLLFTNAGMVPFKHVFLGQEQRDYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI   W+ LT+   L
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYGWEFLTQVVGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV++ED+EA  +W K  G+  D++ RI   DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKEKLWVTVFEEDDEAADIWLKEIGVDPDRLSRIGAKDNFWQMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PG   E+G+RYIE+WNLVFMQ+ +        LPK S+DTGMGLER+A +LQ 
Sbjct: 181 EHIWGGPPGTPEEDGDRYIEVWNLVFMQYNRSQDGTLTPLPKPSVDTGMGLERLAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI A+ +  G++   + I +  VI DH+RS +FL+ DG+LP+NEGRGY
Sbjct: 241 VHSNYEIDLFQALIHAAGKAVGVEKPSHEISSLNVIADHIRSCAFLVVDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  +   LG  +P    L+  L  +MG AYPEL +++  +E+ L+ E+ERF 
Sbjct: 301 VLRRIIRRACRHGYKLGQNQPFFYTLVEELVAQMGEAYPELSESQARVEQVLKKEEERFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL +G+ +L+  +  L   E + G+  F+LYDT+G P+D+  DI     L  ID+  + 
Sbjct: 361 ETLSQGMGILNQAIDSL-DGERIPGETVFQLYDTYGFPVDLTADIAREHEL-DIDLEGYE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +EEQR RARA S   G+  +E+I FS       ++F GY+ L                
Sbjct: 419 ACMEEQRQRARAASQ-FGADLSERIEFS-----EESEFTGYEHLNH-------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     +++  ++  G  VE    GQ+  VV + TPFYAE+GGQ+GD G  + +G+
Sbjct: 459 ---------EAVISHLIVDGSEVERIAEGQQGMVVLNSTPFYAESGGQVGDRGVLVSEGV 509

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ D QK+  G  VH   +E G L    +++  +D   RR   +NHSATHL+H AL  
Sbjct: 510 RFRVDDTQKQ-GGAIVHIGHLECGELSLNDNILAEVDMAKRRATELNHSATHLMHWALRE 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  + LRFD +H +P+T +EL  +ED VN  I +N    TR+M  EDA
Sbjct: 569 VLGDHVQQKGSLVNEEYLRFDFSHFQPMTDSELAQVEDLVNAEILKNRATQTRLMTMEDA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA AL G KY D VRV+++     G HS  LCGGTHV  TG+I L  ++ E  + +G
Sbjct: 629 KAAGAMALFGEKYGDEVRVLNI-----GDHSIELCGGTHVDRTGDIGLFKLIGEGGVASG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RR+EAITG  A+  +   D+ ++ LA+ L+  +G+V  +VE++ ++ R+L+    + K 
Sbjct: 684 VRRVEAITGIAAQQWVRQTDDTVRQLAARLRTDRGSVADKVEQLADKNRQLEKELERLKS 743

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L  +          +I  +  ++  +   D+K L+S +D L+ K+ +  I+L G +   
Sbjct: 744 KLASQAGGDIASQAVEIDGIKVLATALEGADTKVLRSTLDQLKDKLGAAAIVL-GAADGD 802

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT+    R  A +L    A  +GG GG GRP MAQ+GG +    + A+A V +
Sbjct: 803 KVRLVAGVTKSETSRIKAGELVNHVAVQVGGRGG-GRPDMAQAGGSDPAALEGALASVET 861

Query: 895 FLKK 898
           ++++
Sbjct: 862 WVRE 865


>gi|220925350|ref|YP_002500652.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219949957|gb|ACL60349.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 886

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/893 (51%), Positives = 614/893 (68%), Gaps = 35/893 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK +YQ 
Sbjct: 1   MSGVNEIRSTFLDYFAKHGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRLYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW+L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY EDE+A  LW+KI+G S D+IIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 DKDRLLVTVYAEDEDAATLWRKIAGFSDDRIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 PELWGGPPGSPDEDGDRFLEFWNLVFMQYEQIEPGNRVDLPRPSIDTGMGLERIAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A     G   EG    ++RVI DHLR+SSFL+ADG+LP NEGRGY
Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRAPEGPQTASYRVIADHLRASSFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +P+M  L+P L  EMG AYPEL +A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELERAEALITETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L +RG+ G+D  SF 
Sbjct: 361 RTLERGLSILDAETRDLSAGQKLSGETAFTLYDTYGFPLDLTQDALKSRGI-GVDTESFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   TE +WFSL+E+ GAT+F+GY+                  
Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWFSLRERVGATEFLGYEA----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  VE   +G++  +V  QTPFY E+GGQ+GDTG     G+
Sbjct: 463 ------ETAEGVVTALVKGGAEVEAIGAGEEGLLVVSQTPFYGESGGQVGDTGTVTAPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+++TD +KK   +FVHH +VE G L T  ++ L +D++ R  +  +HSATHLLH AL  
Sbjct: 517 RVRVTDTEKKLGDLFVHHVMVEEGRLATGQAIELQVDHERRAAIRAHHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP+   E+ ++ED  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEDMANRVLLQNGPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA+GA AL G KY D VRVVS+  E          S  LCGGTHV+ TGEI ++ +V ES
Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEESSADGRPKAFSVELCGGTHVARTGEIGVITVVGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           ++ +G+RRIEA+TG  AR HL  +  +L ++A  LKV       R+  + E+ R+L  +L
Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAMAGLLKVPPAEAPERLAALIEDRRRLEREL 756

Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+RKL +   +  +    ++  V  M+  +  V+ ++LKS+ D  +K++ SGI+ +VG
Sbjct: 757 AEARRKLAMGGGSAGEDPVREVGGVKLMARAVQGVEMRDLKSLADEGKKRLGSGIVAIVG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           ++++ KA +++ VT+DL DRF+AV L R  ++ LGG GGGGR  MAQ+GGP+G
Sbjct: 817 VAQDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPDG 869


>gi|327483364|gb|AEA77771.1| Alanyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 860

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 544/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+ +L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGSLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|153826924|ref|ZP_01979591.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|254291229|ref|ZP_04962025.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|149739227|gb|EDM53495.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|150422923|gb|EDN14874.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 860

 Score =  971 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 543/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|332035475|gb|EGI71972.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 866

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/903 (44%), Positives = 550/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQIVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           Q +L +T+Y +DEEAF+ W K  GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 QEKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PG   E+G+R+IEIWNLVFMQ+ +Q+      LPK S+DTGMGLER++ +LQ  
Sbjct: 184 HIWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMLPLPKQSVDTGMGLERISAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+  VT    +  +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQGLIAAAASVTNA--QDMDDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAQGSFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L K +I+ GD+ FKLYDT+G P D+  D+   R +  ID   F +
Sbjct: 362 TLERGLAILEESLSDL-KGDIIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEE 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T+F GYD    S              
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNEQLKSEKLTEFKGYDSTHHS-------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  I   GE V+    GQ+  VV D+TPFYAE+GGQ GDTG     G  
Sbjct: 460 ---------ATVVEIFAGGEAVQLLEDGQQGIVVLDRTPFYAESGGQTGDTGTITVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K     F HH IV +G +     +  TID   R  +  NH+ATH+LH AL  +
Sbjct: 511 FNVTNTTKLGNA-FAHHGIV-QGRIGVNDKVDATIDNARRDSIKKNHTATHILHEALRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA 
Sbjct: 569 LGDHVGQKGSLVQPDRLRFDFSHFEAVTKDELREIERVVNDEIRRNFALNTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--K 778
           RRIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+   A+   K
Sbjct: 684 RRIEAVTGADAVAYVSEQEQQLHDVAALVKGDSASVLEKVTALLEKSKGLEKQIAQLNDK 743

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L           I ++N +  +++ V+    K L+ ++D L+ KI SG+I L G++   K
Sbjct: 744 LASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A  +GG GG GRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMAGQVGGKGG-GRPDMAQAGGSEPQNLAAALDSVTAW 861

Query: 896 LKK 898
           L +
Sbjct: 862 LTE 864


>gi|163749985|ref|ZP_02157229.1| alanyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161330259|gb|EDQ01240.1| alanyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 874

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 558/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++RT FLE+F+KNGH+++ SSSL+P NDP+L+FTN+GM  FK +F G++K  Y   T
Sbjct: 4   TTAALRTAFLEYFRKNGHQVVDSSSLVPVNDPSLLFTNAGMNQFKGVFLGEDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  + +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITFAWNFLTQELKIPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D EA+ +W K  G+SAD +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGISADNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG   E+G+R+IEIWN+VFMQ+ +Q+  E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGEMLALPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++  +    N   + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTDLENK--SLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A   L++ + ++ ++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLIEVMGEAAKGLVETQAIVVKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L  + +L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNALSGN-VLDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+  QR RA+A       G     +    +    T+F GY  L  +        
Sbjct: 420 EAGFELAMSAQRKRAQAA------GQFGTDYNDSLKIDEETEFSGYIDLVSN-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + AI +QG+ V E  +G++  VV D TPFY E+GGQ GD+G  
Sbjct: 466 ---------------AKITAIYKQGKSVTEINAGEEALVVLDTTPFYGESGGQCGDSGTL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +GI   + D QK  + +  H   ++ G L    SL  ++D   R++  +NHS THLLH
Sbjct: 511 STNGIEFIVKDTQKYGQAV-GHLGALKTGSLSLGQSLEASVDKSLRQRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + +   EL+++ED VN  I  N  +  ++M
Sbjct: 570 AALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNSQIRHNHELTAQVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 TIDAAKEQGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L   A  LK   G+VV +++   E  ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVTSQKVELDQAAKLLKADSGSVVIKLKAQLERTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +              +I  V  +   +  V+   L+ + D L++K+ SGI++L G
Sbjct: 745 SQLKDKFAAATSADLAGEAQEINGVKVLIKKLDGVEPSALRGLQDELKQKLGSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K ++++ VT+DL  +  A +L    A ++ GG GGGRP MAQ+GG      D A+
Sbjct: 804 ITGDAKVNLIVGVTKDLTSKVKAGELVANIAALV-GGKGGGRPDMAQAGGCQPENLDAAL 862

Query: 890 AGVASFLKK 898
             V+S+LK+
Sbjct: 863 NKVSSWLKE 871


>gi|229525206|ref|ZP_04414611.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229338787|gb|EEO03804.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 860

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 543/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RVSAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|167623167|ref|YP_001673461.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|205830204|sp|B0TK15|SYA_SHEHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167353189|gb|ABZ75802.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 874

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/907 (42%), Positives = 553/907 (60%), Gaps = 54/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW  LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG   E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ +  + G+    N   + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAAILGVTDLENK--SLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGDAAKGLQETQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L   ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNELT-TKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQR RA+A       G  +  +    +    + F GY  L           
Sbjct: 420 EAGFEAAMAEQRKRAQAA------GQFDTDYNEGLKIDEQSSFTGYTELNN--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI + GE  E   +G +  +V D TPFY E+GGQ GD G  
Sbjct: 465 --------------QATVTAIFKSGEAAETITAGDEAVIVLDNTPFYGESGGQSGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I DGI   + D QK  + I  H   V  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 511 IADGIEFTVIDTQKYGQAI-GHIGRVVTGEIKAGQSLTANVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  +   +M
Sbjct: 570 AALRQVLGAHVSQKGSLVDPERLRFDFSHFEGVKANELKEVEELVNTQIRRNHELTAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAATLLKGDSASVVAKLKAQLDKTKQLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++  V  +   +  VD+  L+ + D L++K+QSGI++L  
Sbjct: 745 SQLKDKLAAATSADLAGEAVEVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ E K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 IAGEDKVNLIVGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLDGAL 862

Query: 890 AGVASFL 896
             V  ++
Sbjct: 863 EQVIPWI 869


>gi|91792571|ref|YP_562222.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|122968878|sp|Q12PX7|SYA_SHEDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91714573|gb|ABE54499.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217]
          Length = 874

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 548/911 (60%), Gaps = 54/911 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R+ FL +F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 2   FETTAKLRSAFLAYFETQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRSYSR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 62  AVSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFAWTFLTETLKL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              RL +T+Y+ D+EAF+LW K  G++A+ IIRI  N       DNFW M +TGPCGPCS
Sbjct: 122 PTERLCVTIYETDDEAFELWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 181

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG   E+G+R+IEIWN+VFMQ+ +Q       LPK S+DTGMG+ER
Sbjct: 182 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGAMLPLPKPSVDTGMGIER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+FK LI  + ++ G+    N   + RVI DH+RS +FLIADG++P
Sbjct: 242 IAAIMQGVHSNYEIDIFKQLIAKTAEIIGVSDLENK--SLRVIADHIRSCAFLIADGVMP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T+     L+P L + MG A   L++ ++++E+ L+
Sbjct: 300 SNEGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLISVMGDAAKGLVETQVIVEKALK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F +TL+RGL LLD  L+ L   ++L+GD AFKLYDT+G P+D+  D+   R +  
Sbjct: 360 AEEEQFARTLERGLGLLDNALNELS-GKVLDGDTAFKLYDTYGFPVDLTADVCRERDIT- 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+ EQRSRA+A       G     +         TQF GY  L G       
Sbjct: 418 VDEAGFEAAMAEQRSRAQAA------GNFGADYNKQLIIDEETQFCGYKGLSG------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+   G+ V E   GQ   VV + TPFYAE+GGQ+GD G
Sbjct: 465 ----------------EANVVALYLDGQAVNEVTQGQDAVVVLNNTPFYAESGGQVGDKG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                GI   +TD QK  +    H   V  G ++    L   ++   R++  +NHS THL
Sbjct: 509 VLSAQGINFSVTDTQKFGQA-TGHQGKVLEGSIKVGTKLAAEVNKDLRQRTELNHSVTHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ++G+HV+Q GS + P+ LRFD  H + + +AELK +E+ VN  I  N  + T 
Sbjct: 568 LHAALRQVIGTHVTQKGSLVNPERLRFDFAHFEGVKAAELKQVEELVNAQIRCNHELNTA 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  ++A   GA AL G KY+++VRVV++     G  S  LCGGTHV  TG+I L  I S
Sbjct: 628 EMAIDEAKEKGAMALFGEKYDEKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG+RRIEA+TG  A +++  Q   L   A  LK    +VV +++   ++ ++L+ 
Sbjct: 683 EAGIAAGVRRIEAVTGAAAMAYVAEQQAMLDEAAGLLKSDSASVVAKLKAQLDKTKQLEK 742

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             ++ K +L              I  V  +   +  VD   L+ + D L++K++S II+L
Sbjct: 743 ELSQLKDKLAAAASADMAGDAQDINGVKVLVKKLEGVDPGSLRGLQDELKQKLKSAIILL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G +K+ K +++  V+ DL  +  A +L  + A+ + GG GGGRP MAQ+GG      D 
Sbjct: 803 -GTAKDGKVNLIAGVSNDLTAKVKAGELVAMVAQQV-GGKGGGRPDMAQAGGTQVENLDA 860

Query: 888 AIAGVASFLKK 898
           A+A  ++++ +
Sbjct: 861 ALASASTWIAE 871


>gi|237745661|ref|ZP_04576141.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229377012|gb|EEO27103.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 870

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/911 (42%), Positives = 541/911 (59%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF+  GH ++ SS L+P NDPTLM TN+GMV FK++F G +K  Y  
Sbjct: 1   MKS-AEIREKFLSFFKAKGHTVVRSSPLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWDLLT  + L
Sbjct: 60  ATSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWDLLTTVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L+ TVY ED+EA+ +W    GL  ++I+RI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PPEKLWATVYQEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWNLVFMQF +  +     LP   +DTGMGLER
Sbjct: 180 EIFYDHGPEIAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF++LI+A+ + TG     NN  + +VI DH+R+S+F+I DG++P
Sbjct: 240 LAAVLQHVHSNYEIDLFQNLIRAAARETGTADLTNN--SLKVIADHIRASTFMIVDGLIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            ++G GYVLRRI+RRA+ +   LG T P    L+  L  EMG+AYPEL ++   ++  LR
Sbjct: 298 GSDGHGYVLRRIIRRALRHGYKLGQTRPFFYKLVEDLVKEMGAAYPELAESAGYVQRILR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TLD G+ +L+  L+     ++LNG+ AF LYDT+G PLD+  DI   RG+  
Sbjct: 358 HEEERFGETLDNGMKILESALAD--GTKVLNGETAFTLYDTYGFPLDLTADICRERGIT- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+E+Q++ ARA      +         L+     T+F+GY+ L         
Sbjct: 415 VDEQGFDVAMEKQKATARASGKFKMAAM-------LEYNGEKTRFVGYERLE-------- 459

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  V A+ Q G  VE+ V GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 460 ---------------ETGTVVALYQDGAPVEKIVEGQSGVVVLDVTPFYAESGGQVGDVG 504

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G  +R  + D QK    +  HH  V  G +     +   ++ + R Q   NHS THL
Sbjct: 505 ALLGQHMRFDVEDTQKIQADVAGHHGKVVAGTIAVGDKVDARVNMELRAQTMRNHSVTHL 564

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV+Q GS + PD  RFD +H+ P+T  E++ +E+ VN  I  N P   +
Sbjct: 565 MHKALRQVLGQHVAQRGSLVDPDKTRFDFSHNAPVTDDEIRQVEEIVNREIVANNPTQAQ 624

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ +DAIA GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    IVS
Sbjct: 625 QMSFDDAIAHGATALFGEKYGDVVRVLDIG------FSCELCGGTHVSRTGDIGFFKIVS 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AGIRRIEA+TG  A   +     K+   A  LK     +V R+ ++ ++ + L  
Sbjct: 679 EGGVAAGIRRIEAVTGLAAMYWVQEMARKVGEAAVALKTQPDELVNRIVQLQDQMKGLDR 738

Query: 773 IHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             +  K      Q N        +  V  ++ +I   D   L++ MD L+ ++++  I+L
Sbjct: 739 ELSTLKARFASSQGNDLAAKAVDVKGVKVLASLIEGADVPGLRNAMDKLKDRLKTAAIVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + K+ K S++  +T D+  +  A +L    A+ + GG GGGRP MAQ+GG + +   +
Sbjct: 799 ASV-KDGKVSLIAGITSDMTAKIRAGELVNHVARQV-GGKGGGRPDMAQAGGSDPSALPE 856

Query: 888 AIAGVASFLKK 898
           A+  V +++++
Sbjct: 857 ALKSVKNWVEE 867


>gi|88860236|ref|ZP_01134874.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88817434|gb|EAR27251.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 866

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/903 (43%), Positives = 533/903 (59%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F    H+ + SSSL+P NDPTL+FTN+GMV FK++F G +K  Y   
Sbjct: 4   MTTAQIRQAFLDYFSSKQHQAIASSSLVPGNDPTLLFTNAGMVQFKDVFLGADKRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTTVLKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L +TVY  D+EAF +W K  GL AD+IIRITT DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 TEKLLVTVYHTDDEAFDIWHKQVGLPADRIIRITTTDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+ E+G+R+IEIWNLVFMQF +        LPK S+DTGMGLER++ ++Q  
Sbjct: 184 DIWGGPPGSAEEDGDRFIEIWNLVFMQFNRHADGSMEPLPKQSVDTGMGLERISAIMQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F+ LI+A+  VT  +   +   + RVI DH+RS +FLIADG++P+NEGRGYV
Sbjct: 244 HSNYEIDIFQGLIRAAADVTNAQDLEDK--SLRVIADHIRSCAFLIADGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +     L+ AL  +MG AY EL + + +IE+ LR E+E+F K
Sbjct: 302 LRRIIRRAVRHGNKLGAKDNFFHKLVGALAEQMGDAYQELYKQREIIEKVLRIEEEQFSK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  L  +  D ++ GDV FKLYDT+G P D+  D+   R    ID   F  
Sbjct: 362 TLERGLAILEDGLKDITGD-VIPGDVVFKLYDTYGFPADLTADVARER-FMTIDEPGFQA 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T F GY+                   
Sbjct: 420 CMAAQRKMAQQA------GKFGTDYNEQLKSDKHTDFKGYE------------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S  V  +  +G+ V     GQK  VV D+TPFYAE+GGQ GD G     G  
Sbjct: 455 ----HEHFSGTVIELFFEGQSVNSLADGQKGIVVLDRTPFYAESGGQAGDKGILKIAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             + +  K     F H  ++ +G +     +   ID   R  +  NH+ATHLLH AL  +
Sbjct: 511 FSVYNTTKLGNA-FAHTGVI-QGQIALNDRVDAQIDTTRRDNIRKNHTATHLLHEALRQV 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  + LRFD +H + +T A+L  IE  VN  I +N+ + T +M  +DA 
Sbjct: 569 LGEHVGQKGSLVESERLRFDFSHFEGVTKAQLIEIELMVNAEIRRNVDLQTELMQIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVVS+     G  S  LCGGTHV   G+I L  IVSES I AGI
Sbjct: 629 AKGAMALFGEKYDDEVRVVSI-----GEFSIELCGGTHVKRLGDIGLFKIVSESGIAAGI 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A   +  Q E L  +A+ +K    + V +V  + E  + L+    +   +
Sbjct: 684 RRIEAVTGAAAIEVMHHQAEVLNHIAALVKSDANSAVEKVTALVERTKGLEKEINQLNDK 743

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  +IA V  +   ++  +SK L+ ++D L+ K+ SG+I L G+++  K
Sbjct: 744 LASAAGAGLLDSVIEIAGVKVLIANVAGTESKALRGMVDDLKNKLGSGVIAL-GVAEGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +F A +L    A+ + GG GGGRP MAQ+GG        A+  VA++
Sbjct: 803 VSLITGVTKDLTGKFKAGELVNFMAQQV-GGKGGGRPDMAQAGGSEPEHLASALDSVAAW 861

Query: 896 LKK 898
           + +
Sbjct: 862 ISE 864


>gi|99081073|ref|YP_613227.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040]
 gi|99037353|gb|ABF63965.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040]
          Length = 902

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/909 (48%), Positives = 589/909 (64%), Gaps = 39/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 20  MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 80  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  ++IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT  +  G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 259 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L K ++L G+ AFKLYDT G PLD+ QD L A+G+  +D   F+
Sbjct: 379 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKGIE-VDTDGFD 437

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG  T  K++F + +  G T+F+GY+                  
Sbjct: 438 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYET----------------- 480

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G  V+ A +G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 481 ------EKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 534

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 535 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ +L  I   VND I QN  V TRIM  +DA
Sbjct: 594 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 653

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 713

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK    +V+ R++ + +E + LQ  
Sbjct: 714 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 773

Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K Q+             +I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 774 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + AD+A
Sbjct: 834 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 892

Query: 889 IAGVASFLK 897
           I    + LK
Sbjct: 893 IKAAEALLK 901


>gi|326387205|ref|ZP_08208815.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208386|gb|EGD59193.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 880

 Score =  971 bits (2509), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/890 (50%), Positives = 584/890 (65%), Gaps = 32/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F  NGHE++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E      
Sbjct: 1   MTSTNEIRRSFLDYFGSNGHEVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAQPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+E+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EAF LW+KI+GLS D+IIRI T DNFW+M + GPCGPCSEIF+D G
Sbjct: 121 PKDKLLVTVYHTDDEAFGLWQKIAGLSDDRIIRIATKDNFWAMGDDGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQFEQ   +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQFEQTAGEITGNLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYDID F+ LI ASE +TG+K +  +  +HRVI DHLRSSSFL+ADG+LP+NEGRGY
Sbjct: 241 EHDNYDIDTFRALIAASENLTGVKADDAHRASHRVIADHLRSSSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+P+L TEMG+AYPEL +A+ LIEE L  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPSLITEMGAAYPELGRARALIEEVLEREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD     + +   L G+ AF+LYDT+G P D+ +D L ARG++ +D   F+
Sbjct: 361 QTLANGLKLLDEATDGMDEGAKLPGETAFRLYDTYGFPYDLTEDALRARGIS-VDRDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G     ++WF + E+ GAT+F GY    G              
Sbjct: 420 AAMAQQKAAARAAWKGSGQTADSEVWFDIAERVGATEFTGYTATTG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+V+ G+ V EA +G  V V+ +QTPFY E+GGQ GDTG   G G+
Sbjct: 466 ---------EAQVVALVKDGKEVTEANAGDAVTVITNQTPFYGESGGQQGDTGTITGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L + D QK    +  H   VE G +R    + L ID   R  L  NHSATHLLH AL  
Sbjct: 517 VLAVGDTQKPLGKLHAHQGTVETGTIRVGDLVRLAIDTARRDALRANHSATHLLHQALRN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS +  + LRFD +    +++ ++  IE  VN  I  N PVVTR+M  +DA
Sbjct: 577 RLGQHVMQKGSLVAGERLRFDFSQPTALSAEDIAVIEAEVNAQIRGNSPVVTRLMTPDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA AL G KY D VRV+S+       +S  LCGGTHV + G+I +  IVSES++ +G
Sbjct: 637 IEAGAMALFGEKYGDEVRVLSMGGSSDATYSVELCGGTHVRALGDIGVFRIVSESAVSSG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ AR  L+G+++ LK  A  L+ +   V  RV  + EE RKL+   A+ K 
Sbjct: 697 VRRIEALTGEAARQWLVGREDALKHTAGLLRTTPEEVETRVAALIEERRKLERELAEAKK 756

Query: 780 QLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            L +            +I  + F   ++  +D KEL+ ++D  ++++ SG+  +V +  E
Sbjct: 757 ALALGGGGASPADADEEIGGIKFSGQVLEGLDPKELRGLLDQAKQRLGSGVAAVVAV-NE 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            KAS+   VT+DL+ + +AVDL R     LGG GGGGRP MAQ GGP+G+
Sbjct: 816 GKASIAAAVTDDLVGKVSAVDLVRAGVAALGGKGGGGRPDMAQGGGPDGS 865


>gi|229530358|ref|ZP_04419746.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229332131|gb|EEN97619.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)]
          Length = 860

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 542/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGNIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|254487494|ref|ZP_05100699.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214044363|gb|EEB85001.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 885

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/895 (48%), Positives = 576/895 (64%), Gaps = 39/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+++GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MKTLNDIRSTFLGYFERHGHSVQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RLY+TVY  D+EA  +WKK++GL  ++IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPKRLYVTVYHTDDEAADIWKKVAGLPDERIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFPDGTRKPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLILASANASNTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGIQDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD  L  L +   L+G+ AFKLYDT+G P+D+ QD L  +    +D+  F+
Sbjct: 361 KTLDRGLKLLDDELKGLPEGANLSGEAAFKLYDTYGFPVDLTQDALREQD-RSVDLEGFS 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++ ARA   G G      +WF + E  G T F+GYD                  
Sbjct: 420 AAMEKQKALARAAWSGSGEAADATVWFDVAENAGTTDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A++Q G  V+ A +G KV++  +QTPFYAE+GGQ+GDTG    +  
Sbjct: 463 ------ETAEGQIVALIQDGAQVDAAKTGDKVQIALNQTPFYAESGGQVGDTGLIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+F+H   V  G + T  + VL +D+  R  +  NHSATHLLH AL  
Sbjct: 517 SVTVTDTRKTA-GVFIHFGDVTEGTITTGQAAVLDVDHARRTSIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+ P+++ EL  +E  VN  I QN PV TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAADRLRFDYSHNSPMSAEELAQVEQEVNTYIRQNAPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  +       D   +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RGLGAQALFGEKYGDEVRVVSMGRQPGSGKGADKSTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +SS  +G+RRIEA+TG  A S L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGVRRIEALTGTEALSWLRAQETALSRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L ++    +  +  DVN   FM+ ++S V  K+L +++D  + K+ SG+++L
Sbjct: 756 EVAQLRRELAMSGGGAAAPEARDVNGMKFMAQVLSGVTGKDLPALVDEYKAKLGSGVVLL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +    + KA+V   VT DL  + +AVD+A+ +   LGG GGGGRP MAQ G  + 
Sbjct: 816 IA-DADGKAAVAAGVTADLTSQVSAVDIAKAAVAELGGKGGGGRPDMAQGGAKDV 869


>gi|146307925|ref|YP_001188390.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|145576126|gb|ABP85658.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp]
          Length = 892

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/913 (44%), Positives = 557/913 (61%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 19  MKS-AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 78  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWL 137

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+++W K  G+ A+++IRI  N       DNFW+M +TGPCGP
Sbjct: 138 NLPKEKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGP 197

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 198 CTEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 257

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ AS +  G   EG    + +V+ DH+RS SFLIADG+
Sbjct: 258 ERISAVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGV 315

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 316 TPSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERV 375

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ GD+ FKLYDT+G P+D+  DI   R L
Sbjct: 376 LKTEEEQFAKTLEQGLKILEQDLAGL-QGSVIPGDIVFKLYDTYGFPVDLTADIAREREL 434

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D   F + +E QR RAR+ S           + +L +    T+F+GY+   GS    
Sbjct: 435 S-VDEEGFEREMEAQRERARSAS------AFGMDYNALVKVDADTRFLGYEGTSGS---- 483

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 484 -------------------GKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGD 524

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G     G+R  + D  K A G F+HH +V +G L    S+    +   R+  ++NHSAT
Sbjct: 525 CGYLESAGMRFDVRDTTK-AGGAFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSAT 583

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +LK +ED VN  I +N  V 
Sbjct: 584 HLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVE 643

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I
Sbjct: 644 TEETDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKI 699

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A + L   +E+LK  AS +K S+ NV+ ++  + E  R+L
Sbjct: 700 TSEGGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQL 759

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +      +        +     ++  +  +D K L +++D L+ K+ SG+I
Sbjct: 760 EKELEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVI 819

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  ++K  ++  VT+DL  +  A DL R +A  +GG GG GRP MAQ GG +  K 
Sbjct: 820 LLGGVF-DEKVVLVAGVTQDLTAKLKAGDLMRQAAAAVGGKGG-GRPDMAQGGGVDAGKL 877

Query: 886 DQAIAGVASFLKK 898
           D+A+A  A+F+++
Sbjct: 878 DEALALAATFVEQ 890


>gi|312115730|ref|YP_004013326.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220859|gb|ADP72227.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 894

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/911 (50%), Positives = 619/911 (67%), Gaps = 39/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS ++ IR TF++FF+KNGHE +PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MSTLNEIRGTFIDFFRKNGHEHVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGMETLPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKE+ L
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLVTKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D++RL +TV+ ED++A  LWKKI+GL  D+IIRI T+DNFWSM ETGPCGPCSEIFFD G
Sbjct: 121 DKKRLLVTVFSEDDDAHALWKKIAGLPDDRIIRIPTSDNFWSMGETGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS   +G+R+IEIWNLVFMQ+EQ +K ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PKVPGGPPGSEDADGDRFIEIWNLVFMQYEQVSKTERLDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD DLF+ LI+AS   TG+  EG  + +HRVI DHLR+S+FLIADG+LP+NEGRGY
Sbjct: 241 VHNNYDTDLFQALIRASVDATGVPAEGAALPSHRVIADHLRASAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM ++ LLG  EPL+  LLP L  EMG AYPEL++ + LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHSHLLGAEEPLLYRLLPVLVREMGQAYPELVRGQALIGETLKIEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD     LG  +  +GDVAFKLYDT+G PLD+ QD L AR ++ +DI  FN
Sbjct: 361 RTLARGLSLLDDASGSLGAGDTFSGDVAFKLYDTYGFPLDLTQDALKARSIS-VDIKQFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ AR    G G   T+K+WF + ++ GAT+F+GY+                  
Sbjct: 420 AAMAQQKAEARKAWAGSGEAATDKVWFDVLDQAGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                       + AIV+ G+ V++  +G++  ++ +QTPFY E+GGQ+GD G  I    
Sbjct: 463 ------EAAEGQIVAIVKDGKPVKQLKTGEEGILILNQTPFYGESGGQVGDRGVIIAPKS 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +++ QKK   +F H   V++G L+   ++ + +D+  R  +  NHSATHLLH AL 
Sbjct: 517 AHFDVSETQKKLGKLFAHVGTVKKGPLKVGDAVEMQVDHARRTAIRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS + PD LRFD +H KP++  EL ++E+  N ++ ++ PVVTR+M  +D
Sbjct: 577 ETLGTHVTQKGSLVDPDKLRFDFSHPKPLSKEELAAVEELANAVVLRDSPVVTRLMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSE 713
           A+A+GA AL G KY + VRVVS+   +         S  LCGGTHV +TGEI L+ +V E
Sbjct: 637 AVAAGAMALFGEKYGEEVRVVSMGEANHDERGSRAFSVELCGGTHVRATGEIGLVKVVQE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           +++ AG+RRIEA+T   AR HL  Q+  L+  A  L+V+   V  R++ + +E +KL  +
Sbjct: 697 TAVAAGVRRIEALTANAARLHLSHQEAALRQAAELLRVAPSEVPARLQNLIDERKKLERE 756

Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L  AK+K+ L         +    ++ DV   +  +  +  K+L+S++D  +++I SGI+
Sbjct: 757 LADAKKKIALGTGGDQAGAENPVRQVGDVTMFARTVQGIQPKDLRSLVDDGKRQIGSGIV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            +VG++ + KA +++ VT DL   ++AVDL +  A  +GG GGGGRP +AQ+GGPNG  A
Sbjct: 817 AIVGVTDDGKAGIVVGVTGDLTKHYSAVDLVKAGAAAVGGQGGGGRPDLAQAGGPNGANA 876

Query: 886 DQAIAGVASFL 896
           + A+  +A  L
Sbjct: 877 EAALNAIAECL 887


>gi|220934463|ref|YP_002513362.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995773|gb|ACL72375.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 865

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/904 (42%), Positives = 546/904 (60%), Gaps = 48/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +RT+FLE+F+  GHE++PSS LIP NDPTL+FTN+GMV FK++F G+E+  Y  
Sbjct: 1   MKS-ADLRTSFLEYFRSKGHEVVPSSPLIPGNDPTLLFTNAGMVQFKDVFLGREQRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEYLTQVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L++TV++ED+EA  +W K  G++ ++  RI  +DNFWSM +TGPCGPC+EIF+D  
Sbjct: 120 PEEKLWVTVFEEDDEAADIWLKDVGVNPERFSRIGASDNFWSMGDTGPCGPCTEIFYDHG 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G       +G+RYIEIWNLVFMQ+++        LP+ S+DTGMGLER+A V+Q 
Sbjct: 180 PEVPGGPPGTPEADGDRYIEIWNLVFMQYDRAKDGTLTPLPRPSVDTGMGLERLAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF++LI+A   +   K       + RVI DH+RS SFL+ADG++PANEGRGY
Sbjct: 240 VHSNYEIDLFQNLIRAIRDMA--KGADPTSPSLRVIADHIRSCSFLVADGVMPANEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  +   LG  EP    L+  L  EMG AYPEL++A+ ++E  LR E+ERF 
Sbjct: 298 VLRRIIRRAARHGHKLGLDEPFFHRLVGPLVAEMGEAYPELVKAQPMVERVLRQEEERFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL +L+  +  L   E + G   F LYDT+G P+D+  DI   RGL  +D+  F 
Sbjct: 358 ETLEKGLRILEEDIDGLKGTE-IPGKTIFVLYDTYGFPVDLTGDIARERGLT-LDMAGFE 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E QR RARA S        +  +    +  G + F GY+ L G              
Sbjct: 416 AEMEIQRERARAAS------HFDADYHRKLKIEGESAFTGYEHLDG-------------- 455

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+ + GE V+   SG+   VV D+TPFYAE+GGQ+GDTG  + +G+
Sbjct: 456 ---------QGRVTALFKDGEPVDALASGEHGLVVLDETPFYAESGGQVGDTGELLAEGV 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD +K       H   V  G +     L   ++   R+ + +NHSATHL+H AL  
Sbjct: 507 IFEVTDTRKH-GAAHAHMGRVVEGRIAQGDVLGAKVNQARRQAVVLNHSATHLMHAALRE 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV Q GS + PD LRFD +H +P+++ EL+ IE  VN+ I  N     RIM  + A
Sbjct: 566 ILGDHVQQKGSLVAPDRLRFDFSHFQPVSAEELERIERRVNEAIRANAEAEARIMPIDQA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + SGA AL G KY D VRV+S+     G  S+ LCGGTHV  TG+I +  I+SES + +G
Sbjct: 626 LESGAMALFGEKYGDEVRVLSM-----GGFSTELCGGTHVRRTGDIGVFKILSESGVASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+TG+ A +++   ++ L  +A  +K  +G++  +V  + E  R+L+      K 
Sbjct: 681 IRRIEAVTGENALNYIGETEKNLSRIAEMVKAGRGDLDEKVALLVERSRQLEKELEALKG 740

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             ++  +  ++  +   D K L+  +D L+ K+    ++L  + K+ 
Sbjct: 741 KLASAAGSSLADQAVEVNGIKVLAANLEGADPKSLRDTVDQLKNKLGEAAVVLATV-KDG 799

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT+    R  A +L    A+ + GG GGGRP MA +GG + +    A+A V  
Sbjct: 800 KVSLVAGVTQGQTARLKAGELVNAVAQQV-GGKGGGRPDMAMAGGTDPSGLPGALASVPD 858

Query: 895 FLKK 898
           ++++
Sbjct: 859 WVRE 862


>gi|229512814|ref|ZP_04402281.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229350063|gb|EEO15016.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21]
          Length = 860

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 544/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGSEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T+  +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATDDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|205830243|sp|Q1GHA1|SYA_SILST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 883

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/909 (48%), Positives = 589/909 (64%), Gaps = 39/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 1   MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  ++IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT  +  G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L K ++L G+ AFKLYDT G PLD+ QD L A+G+  +D   F+
Sbjct: 360 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKGIE-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG  T  K++F + +  G T+F+GY+                  
Sbjct: 419 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G  V+ A +G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 462 ------EKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 516 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ +L  I   VND I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK    +V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 754

Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K Q+             +I    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + AD+A
Sbjct: 815 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 873

Query: 889 IAGVASFLK 897
           I    + LK
Sbjct: 874 IKAAEALLK 882


>gi|153802555|ref|ZP_01957141.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3]
 gi|124121918|gb|EAY40661.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3]
          Length = 860

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 542/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRTYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L    +L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GLVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|187927840|ref|YP_001898327.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|187724730|gb|ACD25895.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 888

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/917 (41%), Positives = 538/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 9   MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 69  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 128

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 129 AEKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 188

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 189 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 248

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 249 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 306

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + 
Sbjct: 307 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 366

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 367 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 426

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +  T      L      T F GY+ L   
Sbjct: 427 ENDVI-VDEAAFDAAMNRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLV-- 477

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 478 --------------------RETARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 518 QVGDQGTLKAATVWFDVVDTLKVQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 578 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 638 AATNAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 691

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 692 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTSRIVQVQDQ 751

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K+Q
Sbjct: 752 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 811

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 812 TAAIVLGSVS-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 869

Query: 882 GNKADQAIAGVASFLKK 898
            +   QA+AGVA+++++
Sbjct: 870 PDNLPQALAGVAAWVQQ 886


>gi|260767196|ref|ZP_05876138.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260617804|gb|EEX42981.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 860

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 538/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY  D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+R+IEIWN VFMQF +    +   LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+  V G  Y+  +  + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   E L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR        G     +  L +  GAT+F GY   +G       
Sbjct: 419 IDEAGFEAAMEEQRQRAREA------GHFGTDYNQLIKVEGATEFCGYSATQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  +G+      +G K  +V ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------ESTITEMFVEGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK    I  HH ++  G+     ++   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGVFHVVDTQKLGNAI-AHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  +GLRFD +H + +++AELK +E  VN+ +  N  + T 
Sbjct: 569 LHAALRRVLGEHVTQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY+++VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 IMDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A  +L  Q        +  +    ++  + + + +E + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDYLDAQH-------AQFESKVADMASKAKGLEKEIQHLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A ++            IA V  +   +   D+K L+ ++D L+ ++ SGIIML G   
Sbjct: 737 KLAAKESASLTSK--VKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIML-GNVA 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+  V
Sbjct: 794 DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAAALPSALESV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|53725058|ref|YP_102626.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|67639261|ref|ZP_00438139.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|254177470|ref|ZP_04884125.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254199562|ref|ZP_04905928.1| alanyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254205880|ref|ZP_04912232.1| alanyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|59798500|sp|Q62KZ3|SYA_BURMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52428481|gb|AAU49074.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|147749158|gb|EDK56232.1| alanyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753323|gb|EDK60388.1| alanyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|160698509|gb|EDP88479.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|238519796|gb|EEP83263.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4]
          Length = 874

 Score =  969 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/911 (41%), Positives = 534/911 (58%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVL--LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +             + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGR  MAQ+GG    K  
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRSDMAQAGGTEPAKLP 860

Query: 887 QAIAGVASFLK 897
            A+AGV  +++
Sbjct: 861 AALAGVKGWVE 871


>gi|317484483|ref|ZP_07943393.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6]
 gi|316924259|gb|EFV45435.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6]
          Length = 884

 Score =  969 bits (2505), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/909 (43%), Positives = 536/909 (58%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F+K+GH  + SSSLIP +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MLTANEIRHRFLEYFKKHGHTEVASSSLIPRDDPSLLFTNAGMVQFKKIFCGQEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  +T++  L
Sbjct: 61  ATTSQKCLRVGGKHNDLDNVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFITEDLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLYITVY +D+EAF+LW+K++G++ ++I R+   DNFWSM +TGPCGPCSEI FDQG
Sbjct: 121 PKDRLYITVYKDDDEAFELWQKVAGVAPERIFRLGEKDNFWSMGDTGPCGPCSEIHFDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        + +R++EIWNLVFMQFEQ     R  LP+ SIDTGMGLER+A V Q
Sbjct: 181 ADMACGPDCGIGKCDCDRFLEIWNLVFMQFEQLADGSRVPLPRPSIDTGMGLERIAGVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +NYD DLF+  I    ++ G++Y  N  N    RVI DH R+ +F+IADGILP+NEG
Sbjct: 241 GVRSNYDTDLFQVFINYMAELAGVRYRDNADNDTALRVIADHSRAIAFMIADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G  EP +      +   MG  YPEL      +    R E+E
Sbjct: 301 RGYVLRRLIRRAFRFGRLMGMQEPFLYKTALKVVEVMGEDYPELRARADFMARVTREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TLD+GL +L+  +  L    ++I+ G+ AFKLYDT+G PLDI+ D+   RG    D
Sbjct: 361 RFSSTLDKGLSMLEEEMDALADKGEKIIPGETAFKLYDTYGFPLDIVNDVAEKRGFKA-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN+ + +Q+ RARA   G G       +  L E    ++F GY  L           
Sbjct: 420 EAGFNEYMHQQKQRARAAWKGSGEKDIASRFQGLLEDGLKSEFFGYTAL----------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                       GV  +V  +   G  VE   SG    VV DQTPFY  +GGQ GDTG  
Sbjct: 469 -----------TGVGRVVALLDGDGLPVEALPSGSLGYVVTDQTPFYGASGGQCGDTGLL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ D  K +  + VHH  V+ G L ++  +VLT+    R   + NH+ THLLH
Sbjct: 518 TAPAGSAKVLDTLKPSADLTVHHIEVDGGTLLSDQEVVLTVTESIRLDAARNHTCTHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +TPD LRFD +H  P+T  EL ++E +VN  I  + P+  ++M
Sbjct: 578 AALRRVLGDHVRQAGSLVTPDRLRFDFSHIAPMTPEELAAVERDVNAAIMADYPLTAKLM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            ++ AI  GA AL G KY D VRVV++   D    S  LCGGTH+ STG+     I+SES
Sbjct: 638 GQQAAIDMGAMALFGEKYGDTVRVVTIGNPDH-TESVELCGGTHLHSTGQAGSFVILSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA TG  A  H     E+L  LA+ LK   G +  +++ + +E R L+   
Sbjct: 697 GIAAGTRRIEAATGWNALKHARAMSEELHQLAAMLKTQPGGLAAKLDGLQKENRGLRKDL 756

Query: 775 AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVG 829
            K   Q           K+ ++N +  + +++D+   K ++ +MD ++ K+ SG+  +  
Sbjct: 757 EKAAAQAASGQGGDLMSKVVEINGVKVLAAKLDASNIKAMRELMDDIRSKMPSGVACIAA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E K S+++ V++DL  RF A  L +  A  +  G GGGRP  AQ+GG N    D+A+
Sbjct: 817 PVDEGKVSMILYVSKDLHGRFTAPALIKEVAAPIA-GSGGGRPDQAQAGGTNPAGIDEAM 875

Query: 890 AGVASFLKK 898
             + + + +
Sbjct: 876 DVLKAKIGE 884


>gi|188534789|ref|YP_001908586.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|188029831|emb|CAO97712.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 875

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 566/910 (62%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR +FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQSFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIAFAWELLTSDQWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EAF++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAFEIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF  LI++  QVTG +   N   + RVI DH+RS +FLIADG++
Sbjct: 243 RITAVLQHVNSNYEIDLFAQLIKSVAQVTGAEDLSNK--SLRVIADHIRSCAFLIADGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L   MG+A  +L + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAEGTFFFKLVAPLIAVMGTAGEDLKRQQSQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F KTL+RGL LLD  L +L + + L+G+  F+LYDT G P+D+  D+   R L 
Sbjct: 361 KTEEEQFAKTLERGLALLDEELENL-QGDTLDGETVFRLYDTFGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+E+QR RAR  S G G+      + ++     A++F GY  L+       
Sbjct: 420 -IDEAGFERAMEQQRQRARKAS-GFGAD-----YNNVIHIDQASEFKGYQQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +++ + AI   GE  +   +GQ+  +V D TPFYAE+GGQ+GDT
Sbjct: 466 ----------------LNAAITAIFVDGESADTISAGQEGVIVLDSTPFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     ++D  K A+ I  H   +  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELRGNSASFMVSDTHKYAQAI-GHSGKLAAGKLRVGDSVSAQVDEARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +T+ E++ +E+ VN  + +NL + T
Sbjct: 569 LLHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMTAQEIRQVEEIVNAQVRRNLSIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  E A A GA AL G KY+D VRV+S+     G  S+ LCGGTH + TG+I L  I 
Sbjct: 629 NIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHANRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +  N+  +V  + +  R L+
Sbjct: 684 SESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAHLVKANNSNLNEKVRALLDHTRALE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + Q   ++          +     +   +S+V+ K L++++D L+ ++ S II+
Sbjct: 744 KQLQQLRDQQAAQESASLSSKAVTLKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S++  VT+DL DR  A +L    A  + GG GGGRP MAQ+GG +     
Sbjct: 804 LATVV-DGKVSLITGVTKDLTDRIKAGELVGELALQV-GGKGGGRPDMAQAGGADALALP 861

Query: 887 QAIAGVASFL 896
            A+AGV S++
Sbjct: 862 AALAGVESWV 871


>gi|153829905|ref|ZP_01982572.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|148874593|gb|EDL72728.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39]
          Length = 860

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 545/907 (60%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGEHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|147675089|ref|YP_001216045.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229520840|ref|ZP_04410262.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262169855|ref|ZP_06037545.1| alanyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|205830284|sp|A5F9B7|SYA_VIBC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146316972|gb|ABQ21511.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227012371|gb|ACP08581.1| alanyl-tRNA synthetase [Vibrio cholerae O395]
 gi|229342073|gb|EEO07069.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|262021589|gb|EEY40300.1| alanyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 860

 Score =  969 bits (2504), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/907 (42%), Positives = 545/907 (60%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|315125679|ref|YP_004067682.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315014193|gb|ADT67531.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 866

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/903 (43%), Positives = 543/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF    H+++PSSSLIP ND TL+F N+GMV FK++F G E   Y   
Sbjct: 4   MTTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +T+Y +DEEAF  W    GL  D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 124 KEKLLVTIYHDDEEAFGYWANDIGLPEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGE 183

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PG   E+G+R+IEIWNLVFMQ+ +Q+      LPK S+DTGMGLER++ +LQ  
Sbjct: 184 HIWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMEPLPKQSVDTGMGLERISAILQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+  VT    +  +  + RV+ DH+RS +FLI+DG++P+NEGRGYV
Sbjct: 244 HSNYEIDLFQGLIAAAASVTNA--QDMDDKSLRVVADHIRSCAFLISDGVMPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG        L+ AL  +MG AYPEL + + +IE+ LR E+E+FGK
Sbjct: 302 LRRIIRRAVRHGNKLGAKGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGK 361

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L+  LS L  D ++ GD+ FKLYDT+G P D+  D+   R +  ID   F  
Sbjct: 362 TLERGLAILEESLSDLTGD-VIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEA 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +  QR  A+        G     +    +    T F GYD    S              
Sbjct: 420 CMAVQRKTAQQA------GKFGADYNDQLKSDKHTDFKGYDSTHYS-------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V  I   GE V     GQ+  +V D+TPFYAE+GGQ+GD+G     G  
Sbjct: 460 ---------GTVVEIFAGGEAVSLLEDGQQGIIVLDRTPFYAESGGQIGDSGTITVAGGE 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K     F HH  V +G +     +  TID   R  +  NH+ATH+LH AL  +
Sbjct: 511 FVVTNTTKLGNA-FAHHGTV-QGRIGVNDKVDATIDDARRDSIKKNHTATHILHEALRQL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HVSQ GS + PD LRFD +H + +T  EL+ IE  VND I +N  + T +M  +DA 
Sbjct: 569 LGEHVSQKGSLVQPDRLRFDFSHFEAVTKQELREIERVVNDEIRRNFALNTELMAIDDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY+D VRVV++     G +S  LCGGTHV   G+I L  IVSES I AG+
Sbjct: 629 AKGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--K 778
           RRIEA+TG  A +++  Q+++L  +A+ +K    +V+ +V  + E+ + L+   A+   K
Sbjct: 684 RRIEAVTGAEAIAYVSEQEQQLADVAALVKGDNASVLEKVTALLEKSKGLEKQVAQLNDK 743

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L           + ++N +  +++ V+    K L+ ++D L+ KI SG+I L G++   K
Sbjct: 744 LASAAGASLLDSVVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASGDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+DL  +  A +L    A  +GG GG GRP MAQ+GG        A+  V ++
Sbjct: 803 VSLIAGVTKDLTGKVKAGELVNHMAGQVGGKGG-GRPDMAQAGGSEPQNLTAALDSVTAW 861

Query: 896 LKK 898
           L +
Sbjct: 862 LTE 864


>gi|297580680|ref|ZP_06942606.1| alanyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297535096|gb|EFH73931.1| alanyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 860

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 543/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGASFHKLVGPLAEVMGTAGAELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|15640567|ref|NP_230196.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590679|ref|ZP_01678012.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121728567|ref|ZP_01681589.1| alanyl-tRNA synthetase [Vibrio cholerae V52]
 gi|153819108|ref|ZP_01971775.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|153823946|ref|ZP_01976613.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227080728|ref|YP_002809279.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229507157|ref|ZP_04396663.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229508981|ref|ZP_04398469.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229519648|ref|ZP_04409091.1| alanyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229606165|ref|YP_002876813.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254850784|ref|ZP_05240134.1| alanyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255744228|ref|ZP_05418181.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|12644031|sp|Q56648|SYA_VIBCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|9654973|gb|AAF93713.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547465|gb|EAX57573.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121629179|gb|EAX61620.1| alanyl-tRNA synthetase [Vibrio cholerae V52]
 gi|126510340|gb|EAZ72934.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|126518530|gb|EAZ75753.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|227008616|gb|ACP04828.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229344337|gb|EEO09312.1| alanyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229353906|gb|EEO18840.1| alanyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229355902|gb|EEO20822.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229368820|gb|ACQ59243.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254846489|gb|EET24903.1| alanyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255738168|gb|EET93560.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101]
          Length = 860

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/907 (42%), Positives = 545/907 (60%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|330889188|gb|EGH21849.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020]
          Length = 874

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +  G GGGRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVS-GKGGGRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|56460839|ref|YP_156120.1| alanyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|81599943|sp|Q5QUV7|SYA_IDILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56179849|gb|AAV82571.1| Alanyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 865

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/903 (42%), Positives = 556/903 (61%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  FL +F + GHE +PS+S+IP NDPTL+FTN+GMVPFK++F G +K  Y   
Sbjct: 3   MNSAQIRDAFLNYFAERGHEKVPSASMIPGNDPTLLFTNAGMVPFKDVFLGTDKRRYDKA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+C+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK++AIQ AWD LTKE  L 
Sbjct: 63  TSAQRCLRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKQAIQYAWDFLTKELKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L++TV+ ED+EA+ +W K  G+  D+I RI   DNFWSM +TGPCGPCSE+F+D GE
Sbjct: 123 AEKLWVTVFTEDDEAYDIWVKDIGVPEDRISRIGEKDNFWSMGDTGPCGPCSEVFYDHGE 182

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PG   E+G+RYIEIWNLVFMQ+ +Q       LP  SIDTGMGLER++ ++Q  
Sbjct: 183 EVWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTLEPLPDPSIDTGMGLERISAIMQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+ ++ G     N   + RVI DH+RS SFLI DG++P+NEGRGYV
Sbjct: 243 HSNYEIDLFQALIKAAAEIIGTNDLDNK--SLRVIADHIRSCSFLITDGVMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +  LLG  +     L+  L  +MG AYPEL Q K +I++ L  E+++F +
Sbjct: 301 LRRIIRRAVRHGHLLGAKDTFFFRLVDELARQMGEAYPELEQKKQIIKDALEREEQQFAR 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+RGL +L   +  L K  ++ GDV FKLYDT+G P+D+  DI   + L  ID   F Q
Sbjct: 361 TLERGLAILSDEIGEL-KGNVIPGDVVFKLYDTYGFPVDLTADIAREQELT-IDEQGFEQ 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+      +        +      +    +    T F GYD + G               
Sbjct: 419 AM------SEQRQRAQQASQFGMDYNQQLKSDNKTAFTGYDDVVG--------------- 457

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V  + + G+ VE+  +G+   VV  +TPFYAE+GGQ+GD G  + +G  
Sbjct: 458 --------QAKVVELFKDGKPVEQLQAGENGIVVLSETPFYAESGGQIGDKGVLVANGPA 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TD Q   + I  HH  V +  ++   S+   ID + R  +  NHSATHLLH AL  +
Sbjct: 510 FEVTDTQYIGKAI-AHHG-VAKAAVKLSDSVKAEIDSERRENIKRNHSATHLLHAALRNL 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D +RFD +H +P+T+ +L  +E  VN  +  NLP+ T++M  ++A 
Sbjct: 568 LGEHVTQKGSLVEADKMRFDFSHFEPVTTEQLAQLEREVNAQVRANLPLQTQLMAIDEAK 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY+++VRVV +     G  S  LCGGTHV +TG+I L  I SE  I +G+
Sbjct: 628 EAGAMALFGEKYDEQVRVVRM-----GDFSMELCGGTHVKATGDIGLFRITSEGGIASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRK 778
           RRIE +TG+ A  +   Q   L+ +A  LK    +V  +V+++  ++R+L+  +   ++K
Sbjct: 683 RRIEVVTGEAAVRYTQQQQSVLQQIAGELKTEPSSVAEKVQQLQHKFRELERKNEQLQQK 742

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          +  D+N +  II+E+   D K L+ ++D L+ ++ SGI++L G +   K
Sbjct: 743 LAQQAGGGLIAQAVDINGVKAIIAELDQADPKSLRGLVDDLKNQMGSGIVLL-GTANGDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT DL  +  A D+   +A V+ GG GGGRP MAQ+GG    + ++A+A   ++
Sbjct: 802 VSLIAGVTTDLTSKVKAGDIVNQAANVV-GGKGGGRPDMAQAGGSLPEQLNEALATATTW 860

Query: 896 LKK 898
           L++
Sbjct: 861 LQQ 863


>gi|241662427|ref|YP_002980787.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240864454|gb|ACS62115.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 893

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 14  MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 73

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 74  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 134 AEKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 194 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + 
Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 371

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 372 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 431

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +  T      L      T F GY+ L   
Sbjct: 432 ENDVI-VDEAAFDAAMTRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLV-- 482

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 483 --------------------RETARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 523 QVGDQGTLKAATVWFDVVDTLKLQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 583 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 643 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 697 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIVQVQDQ 756

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K+Q
Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L G   + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 817 TAAIVL-GSVTDGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874

Query: 882 GNKADQAIAGVASFLKK 898
            +   QA+AGVA+++++
Sbjct: 875 PDNLPQALAGVAAWVQQ 891


>gi|170751975|ref|YP_001758235.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|205830144|sp|B1M0N0|SYA_METRJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170658497|gb|ACB27552.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 892

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/914 (50%), Positives = 601/914 (65%), Gaps = 40/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K GHE++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFAKAGHEVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGMEKRAYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +D+EA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 KPDKLLVTVYADDDEAAGLWKKIAGFSDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PALQGGPPGSPDEDGDRFLEFWNLVFMQYEQLEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E   + ++RVI DHLR+SSFL+ADG+LP NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATMASYRVIADHLRASSFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  EP M  L+P L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAEILGAREPTMFRLVPTLVREMGQAYPELMRAESLIAETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L + + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F 
Sbjct: 361 RTLERGLSILDAESRDLREGDKLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTDAFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  AR    G G   TE +WF L+E+ GAT+F+GY+                  
Sbjct: 420 AAMQRQKQAAREAWKGSGEAATETVWFGLRERVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      IV A+++ G  V    +GQ   V+ +QTPFY E+GGQ+GDTG  +  G+
Sbjct: 463 ------ENAEGIVTALLRDGAEVTTLAAGQTGLVLVNQTPFYGESGGQVGDTGLILAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD QKK   +FVHH  VE G L  +  + L +D   R+ +  NHSATHLLH AL  
Sbjct: 517 RARVTDTQKKLGDVFVHHVTVEEGTLSLDQPVELKVDNVRRKAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD++H KPI + EL  +ED  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDISHPKPIEADELARVEDIANAVLLQNAPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGGTHVSSTGEIMLLYIV 711
           IASGA AL G KY D VRVVS+     G          S  LCGGTH + TG+I  + IV
Sbjct: 637 IASGARALFGEKYGDEVRVVSMGLPVDGEAAQPRARNFSVELCGGTHAARTGDIGAITIV 696

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES++ AG+RRIEA+T   AR H   +   L +LA  LK        R+  + E+ R+L+
Sbjct: 697 AESAVGAGVRRIEALTADAARRHRAEEARTLAALAGILKAPVSEAPDRLTALMEDRRRLE 756

Query: 772 LIHA--KRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
              A  +RKL +  E          +I  V F   +I  +D ++LK ++D  +K++ SGI
Sbjct: 757 RELAETRRKLAMGGEGGPGSGAQQTEIGGVAFRRSVIEGLDMRDLKPIVDEEKKRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + +VGI  + KA +++ VT+DL  R++AV L R  A  LGG GGGGR  MAQ+GGPNG  
Sbjct: 817 VAVVGIGPDGKAGLVVGVTDDLTARYDAVGLVRAGAGALGGKGGGGRRDMAQAGGPNGAG 876

Query: 885 ADQAIAGVASFLKK 898
           A+ A+  VA  L +
Sbjct: 877 AEAALDAVAQALTE 890


>gi|315181173|gb|ADT88087.1| alanyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 860

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/906 (42%), Positives = 537/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY  D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PGS  E+G+R+IEIWN VFMQF +    +   LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+  V G  Y+  +  + RV+ DH+RS +FLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   E L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR RAR        G     +  L +  GAT+F GY   +G       
Sbjct: 419 IDEAGFEAAMEEQRQRAREA------GHFGTDYNQLIKVEGATEFCGYSATQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  +G+      +G K  +V ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------ESTITEMFVEGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK    I  HH ++  G+     ++   +D + R  +S+NHSATHL
Sbjct: 510 VLKTDAGVFHVVDTQKLGNAI-AHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +  +GLRFD +H + +++AELK +E  VN+ +  N  + T 
Sbjct: 569 LHAALRRVLGEHVMQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A A GA AL G KY+++VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A  +L  Q        +  +    ++  + + + +E + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDYLDAQH-------AQFESKVADMASKAKGLEKEIQHLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A ++            IA V  +   +   D+K L+ ++D L+ ++ SGIIML G   
Sbjct: 737 KLAAKESASLTSK--VKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIML-GNVA 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+  V
Sbjct: 794 DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAVALPSALESV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|329894416|ref|ZP_08270263.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328923063|gb|EGG30387.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 866

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/902 (43%), Positives = 536/902 (59%), Gaps = 47/902 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  V  IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G E   Y  
Sbjct: 1   MKTV-EIREAFLSYFESQGHTRVASSSLVPENDPTLLFTNAGMNQFKDTFLGSEPRDYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWTFLTEVLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 120 PEDRLWVTVHVSDDEAADIWIKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 178

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS  +  +RYIEIWNLVFMQF +    E   LPK S+DTGMGLER+A V+Q 
Sbjct: 179 ADVPGGPPGSENDDLDRYIEIWNLVFMQFNRDASGELHPLPKPSVDTGMGLERIAAVMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+A+ Q        +N  + RVI DH+RS SFLI DG++P NEGRGY
Sbjct: 239 VHSNYEIDLFQALIKAAAQAVNCNNLLDN--SLRVIADHIRSCSFLIVDGVVPGNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG TEP    L+ AL  +MG AYPEL Q    + + L  E+++F 
Sbjct: 297 VLRRIIRRAVRHGNKLGATEPFFYKLVDALSAQMGEAYPELAQQAGRVAQVLLQEEQQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD G+ +L+  L  L   E + GD+ FKLYDT+G P+D+  DI   RGL  +D+  ++
Sbjct: 357 KTLDNGMQILEESLEGLQGGE-IPGDIVFKLYDTYGFPVDLTNDIARERGLT-LDMAGYD 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ +QR+R++        G     +       GAT+F+GY   +               
Sbjct: 415 EAMAKQRARSQE------GGKFVVDYSKTIALEGATEFLGYSDAK--------------- 453

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V+ I+  GE V    +GQ+  VVFD+TPFYAE+GGQ GDTG     G+
Sbjct: 454 --------ASGTVEVIIVDGEKVSTLAAGQQGVVVFDRTPFYAESGGQTGDTGGLTAPGL 505

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D  K+ + + +HH  VE G L    S+ + ID   R Q+  NHSATHLLH AL  
Sbjct: 506 SARVLDTTKQGD-LHLHHVHVESGELAVAASVSMQIDEHLRDQIRANHSATHLLHAALRQ 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +T + LRFD +HS P+T+ EL  +   VN  +  N  V TR+MN ++A
Sbjct: 565 VLGGHVQQKGSLVTAERLRFDFSHSAPVTADELAQLNAIVNAQVMANTEVSTRLMNMDEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +GA AL G KY D VRV+++        S  LCGGTHV  TG+I +  IVSES I AG
Sbjct: 625 VQAGAMALFGEKYGDEVRVLAMGT---DSFSVELCGGTHVGRTGDIGVFRIVSESGIAAG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG  A + +   D  L+ +   LK    NVV RV  +  + R+L+    + K+
Sbjct: 682 VRRIEAVTGVGALAEINSLDTALQGVCLELKAQPENVVSRVAAMRGQIRELEKQIDQLKM 741

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++             ++  V  ++  +   D+K L+  +D ++ K+   +++L  +  + 
Sbjct: 742 KMAQAAGGELASQAIEVRGVPVLAARLDGADAKALRDAVDQMKSKLGDSVVLLASVV-DD 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  +   V++ + DR  A DL R  A  L GG GGGRP MAQ GG +    +  +  V +
Sbjct: 801 KIVLAAGVSKAVTDRVKAGDLMREFATRL-GGKGGGRPDMAQGGGTDVAALNDVLGAVPA 859

Query: 895 FL 896
           ++
Sbjct: 860 WV 861


>gi|325916030|ref|ZP_08178320.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537706|gb|EGD09412.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937]
          Length = 882

 Score =  968 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/909 (43%), Positives = 539/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FFQ  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFQGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASGLTGVTDLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVLARDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V +     E++ G  AF+L+DT+G P+D+  DI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFDDVAA--RSQEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + ++I D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGSDVSIEIVDTQKFAGQFHGHVGRITEGALALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGEHVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   AS L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLFEAASLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASA-GKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGAALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 DGVPSWVKQ 879


>gi|78221425|ref|YP_383172.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|123572914|sp|Q39Z77|SYA_GEOMG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78192680|gb|ABB30447.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15]
          Length = 876

 Score =  968 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/906 (41%), Positives = 544/906 (60%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH ++PSS LIP NDPTL+F N+GM  FK+ F G E   Y   
Sbjct: 1   MTGNELRARFLKFFEDRGHTVVPSSLLIPHNDPTLLFANAGMNQFKDCFLGMEDRGYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  TSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHHQEGVPRERIFRFGEKDNFWSMGDTGPCGPCSEIFWDNGP 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER+ TV+Q 
Sbjct: 181 EVGCGSPDCTVGCDCDRYMEIWNNVFMQFNRSADGTMTPLPKPSVDTGMGLERICTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DL + +I+  E+++G +Y  N  + V+ RVI DH R+++FLI DG+LP+NEGR
Sbjct: 241 VKSNYDTDLLQGVIRHVERLSGKRYRENEKDDVSMRVIADHARATTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP++   + A+   MG +YPEL++ +  I++ +R+E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVLYRTVDAVNEMMGGSYPELLEREEYIKKVIRAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L      ++ G+  F+LYDT G P D+  DI+ A G   ID 
Sbjct: 361 FAETLDRGLAILNDAVAQLKGEGKTVIPGETLFRLYDTFGFPTDLTADIVRAEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +  QR +AR H  G G      +   L  +   + F+GYD              
Sbjct: 420 PGFEACMGRQREQAREHWKGSGEEGIAAVHKELHNRGVRSVFVGYDE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + +I++ G  V EA +G+ VE++ D+TPFY E+GGQ GDTG   
Sbjct: 467 ----------KCSYAAIGSILRGGSEVAEAKAGEDVEIITDRTPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G ++T  +  L +   +R   + NH+ATHLL  
Sbjct: 517 TGSAHVRVTGTIRPYPDLIVHRGTVVEGTIKTGEACDLKVASVDRDATARNHTATHLLQT 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH   +T  E++ +E+ VN  I +N  V  R M 
Sbjct: 577 ALRRVLGEHVKQAGSLVAPDRLRFDFTHFAAMTPEEIRRVEEIVNTFIMENDTVHAREMA 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SGA AL G KY DRVRVV V     G  S+ LCGGTHV + G+I    I+SE+ 
Sbjct: 637 VEEAMESGATALFGEKYGDRVRVVKV-----GEVSAELCGGTHVRAAGDIGSFKILSEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  H+   +++ + +A+ +K   G+ + R++++    R++Q    
Sbjct: 692 IAAGVRRIEALTGMGALRHIQELEDEKRQIAALMKAEGGDNIDRLQKLLARQREMQREIE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + QLN            ++  V  ++  +   D K+L+ + D L+ ++ SG++ L G 
Sbjct: 752 TLQGQLNAAKSGDLLADVREVNGVKVLATKVEVDDPKKLRELADTLKDRLGSGVVAL-GC 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            K+ +A++L+ VT+DL  R  A D+ R  A V+ GG GGG+P +AQ+GG   +   +A+ 
Sbjct: 811 EKDGRANLLVAVTKDLAGRIRAGDIIRQLAPVI-GGSGGGKPELAQAGGSQPDMLAEALG 869

Query: 891 GVASFL 896
            V   +
Sbjct: 870 KVYGLI 875


>gi|119774185|ref|YP_926925.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|119766685|gb|ABL99255.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B]
          Length = 900

 Score =  968 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 558/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 31  TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 90

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L +
Sbjct: 91  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 150

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+EAF +W K  G+ A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 151 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 210

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN+VFMQ+ +Q+      LPK ++DTGMG+ER++
Sbjct: 211 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 270

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 271 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSDLENK--SLRVIADHIRSCAFLVADGVMPSN 328

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A  EL   + ++E+ L++E
Sbjct: 329 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 388

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R L  +D
Sbjct: 389 EEQFARTLERGLGMLDAALADL-KGDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 446

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+ EQRSRA+A       G     + +  +   AT F GY  L           
Sbjct: 447 EEGFNAAMAEQRSRAQAA------GQFSADYNAALKIDTATDFCGYTELA---------- 490

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V A+ + GE V+ A +G  + VV D TPFYAE+GGQ+GD G  
Sbjct: 491 -------------AESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 537

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +GI  H   +  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 538 LAEGVEFNVADTQKFGQGI-GHKGQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 596

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK++ED VN  I +N  +    M
Sbjct: 597 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 656

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A A GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 657 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 711

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ R+L+  +
Sbjct: 712 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 771

Query: 775 AKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +              +I  V  +   +  V++  L+ + D L++K++SG+++L  
Sbjct: 772 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLA- 830

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I    K +++  VT+DL  +  A +L  + A  + GG GGGRP MAQ+GG    K D A+
Sbjct: 831 IGSGDKVNLIAGVTQDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPAKLDGAL 889

Query: 890 AGVASFLKK 898
           A V  +L +
Sbjct: 890 ASVVPWLNE 898


>gi|309780932|ref|ZP_07675671.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308920235|gb|EFP65893.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 880

 Score =  968 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/917 (41%), Positives = 537/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 AERLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR+E+ RF +T++ G+ +LD  L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 359 EVLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +  T      L      T F GY+ L   
Sbjct: 419 ENDVI-VDEAAFDAAMTRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYEQLV-- 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 470 --------------------RETARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDQGTLKAATVWFDVVDTLKVRPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LGSHV Q GS +  +  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 630 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIGS------SKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IVSES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAVLRAQPSELTSRIVQVQDQ 743

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K+Q
Sbjct: 744 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L G   + K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVL-GSVTDGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +   QA+AGVA+++++
Sbjct: 862 PDNLPQALAGVAAWVQQ 878


>gi|241762269|ref|ZP_04760350.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373172|gb|EER62802.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 930

 Score =  968 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/914 (49%), Positives = 597/914 (65%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 41  MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 100

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 101 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 160

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 161 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 220

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 221 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 280

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 281 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 340

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 341 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 400

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G+VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 401 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 459

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +GS             
Sbjct: 460 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKGS------------- 506

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                       + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G  IG+  
Sbjct: 507 ----------GQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVIIGNND 556

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 557 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 616

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K +T  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 617 DQLGQHVSQKGSMVSAERLRFDFSHQKALTDQELAAIEAEVNQQILNNSVVTTRLMTPES 676

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 677 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 736

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 737 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 796

Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A  +  L + + +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 797 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 856

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ +  E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 857 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 915

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 916 AAQALEAVKALLEK 929


>gi|209964228|ref|YP_002297143.1| alanyl-tRNA synthetase [Rhodospirillum centenum SW]
 gi|209957694|gb|ACI98330.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
          Length = 898

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/897 (49%), Positives = 582/897 (64%), Gaps = 42/897 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y   
Sbjct: 4   KTANEIRATFLDFFKKNGHAVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGNETRPYSRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKE+ L 
Sbjct: 64  VTAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEYGLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL +TV+  D+EA  LWKK++G+  D+IIRI T+DNFW M +TGPCGPCSEIFFD G 
Sbjct: 124 KDRLCVTVFHTDDEAADLWKKVAGIGDDRIIRIPTSDNFWMMGDTGPCGPCSEIFFDHGP 183

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMATVL 237
            I GG PGS+E +G+R+IEIWNLVFMQ+E   +    ER  LPK SIDTGMGLER+A VL
Sbjct: 184 HIAGGPPGSAEQDGDRFIEIWNLVFMQYEQFPKDGGHERVPLPKPSIDTGMGLERLAAVL 243

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NYD DL + LI AS   TG   EG + V+HRVI DHLR+ SFLIADG++P+NEGR
Sbjct: 244 QGVHDNYDTDLMRALILASADATGAPPEGAHAVSHRVIADHLRACSFLIADGVMPSNEGR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM +A +LG  +P+M  L+PAL  EMG  Y EL +A+ LI ETLR E+ +
Sbjct: 304 GYVLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGGHYTELQRAQPLITETLRLEETK 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TLDRGL LLD     L   + L+G VAF LYDT+G PLD+ QD+L  R   G+D+  
Sbjct: 364 FKQTLDRGLRLLDEEEGRLAPGQALSGQVAFTLYDTYGFPLDLTQDVLRGR-QRGVDVDG 422

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN A+EEQR +ARA   G G   TE++WF LK++ GAT+F+GYD                
Sbjct: 423 FNAAMEEQRRKARAAWAGSGEAATERVWFELKDEVGATEFLGYDT--------------- 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-I 535
                       + V A++   G  ++ A +GQ+V VV +QTPFY E+GGQ+GD+G    
Sbjct: 468 --------EMAEAKVTALLDPAGTRLDRAAAGQEVIVVVNQTPFYGESGGQVGDSGVLFS 519

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G  + + D QKK   ++ H   V RG +     + L +D   R  +  NHSATHLLH 
Sbjct: 520 AGGAEVAVRDTQKKLGAVWAHIGAVTRGTIAVGDVVELRVDGARRADIRANHSATHLLHE 579

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS + P+ LRFD++   P+++ +++ +E  VN  I  N  V TR+M+
Sbjct: 580 ALRRRLGEHVTQKGSLVAPERLRFDISQPTPLSAEDVQVVEAEVNRRILGNSEVTTRLMS 639

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVS 712
            + AI  GA AL G KY + VRVVS+   D G     S  LCGGTHV  TG+I L  IVS
Sbjct: 640 PDAAIELGAMALFGEKYGEEVRVVSMGGVDAGGNKEFSVELCGGTHVRRTGDIGLFKIVS 699

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E ++ AG+RRIEA+TG+ A S+L  Q+ +L   AS LKV    V  +V  + EE R+L+ 
Sbjct: 700 EGAVAAGVRRIEAMTGRGALSYLDEQEGRLIQAASALKVPPAEVPAKVAALVEERRRLEK 759

Query: 773 IHAKRKLQ--------LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             A  + Q              +  ++  V  ++ ++ ++ +K+LK + D L+K++ SG+
Sbjct: 760 ELADLRRQVALGGGGAGPAAAAAVKEVGGVKLLARVLPDLPAKDLKPLADDLKKQVGSGV 819

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++ +    + K S+++ VTEDL  R +AVDL R  +  +GG GGGGRP MAQ+GGP+
Sbjct: 820 VVAIS-QADGKGSIVVGVTEDLAGRLSAVDLVRAGSAAMGGKGGGGRPDMAQAGGPD 875


>gi|170727677|ref|YP_001761703.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|205830209|sp|B1KPS5|SYA_SHEWM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169813024|gb|ACA87608.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 874

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 549/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAISFAWNFLTQELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D+EAF +W K  G+ A+ +IRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYETDDEAFDIWTKEIGVPAESLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG   E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+    N   + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTDLENK--SLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      L+P L   MG A   L++ + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVETQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LDG L+ L K ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDGALNEL-KGDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  +  +    +    T F GY  L           
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GQFDTDYNDSLKIDEETHFSGYTEL----------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI + GE  +   +G+   +V D TPFY E+GGQ GD G  
Sbjct: 463 ------------TAQGKVTAIYKAGESTDSLNAGEDAVIVLDSTPFYGESGGQCGDKGLL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G+   + D QK  + +  H   V  G +    +L   +D + R +  +NHS THLLH
Sbjct: 511 TAKGVEFDVKDTQKYGQAV-GHQGTVNSGSISVGDTLEAIVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS +  + LRFD +H + +   ELK++ED VN  I +N  +   +M
Sbjct: 570 AALRQLLGTHVTQKGSLVDAERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSADVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DMDQAKERGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L   A+ LK    +VV +++   +  + L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAAQKAELDQAAALLKADSNSVVTKLKAQLDRTKLLEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++ K +L             ++     +   +  VD+  L+ + D L++K+ SG+++L  
Sbjct: 745 SQLKDKLAAATSADLAGEAKQVNGAKVLIKKLEGVDAGALRGLQDELKQKLGSGVVVLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ E K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG    K D A+
Sbjct: 804 IAGEAKVNLIVGVTKDLTAKVKAGELVASIAAQV-GGKGGGRPDMAQAGGTEPEKLDGAL 862

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 863 EQVLPWLEE 871


>gi|121998432|ref|YP_001003219.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|205830063|sp|A1WXK5|SYA_HALHL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121589837|gb|ABM62417.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1]
          Length = 863

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/902 (42%), Positives = 537/902 (59%), Gaps = 49/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF++ GHE++PSS L+P NDPTL+FTN+GMVPFK +F G+E+  YQ  
Sbjct: 1   MTSAQLRAAFLDFFRERGHEVVPSSPLVPANDPTLLFTNAGMVPFKEVFLGREQRGYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+  +L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRYAWSFLTEVVELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY++D+EA ++W +  G+   +  RI  +DNFWSM +TGPCGPCSE+F+D G 
Sbjct: 121 PERLWVTVYEDDDEAAQIWLEEIGVDPARFRRIGAHDNFWSMGDTGPCGPCSEVFYDHGP 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS  E+G+RYIE+WNLVFMQ+++  +     LP  SIDTGMGLER+A VLQ  
Sbjct: 181 EVPGGPPGSDEEDGDRYIEVWNLVFMQYDRDAEGNLNPLPSPSIDTGMGLERLAAVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +N++ DLF  LI A+ ++ G+        + +V+ DH+R+ SFLI DG+LP+ EGRGYV
Sbjct: 241 HDNFETDLFTPLIDAAGEIAGV--SDRRKPSLKVVADHIRACSFLIVDGVLPSTEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L+  L   MG A+PEL   +  +E+ L  E++RF +
Sbjct: 299 LRRIIRRAVRHGYQLGIDEPFFYRLVDPLDAVMGEAFPELRDRREFVEKILFQEEKRFRE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ GL LLD  L       +++G+V FKLYDTHG P+D+  DI   R L  +D   F  
Sbjct: 359 TLEDGLALLDEYLGG-NDSGVIDGEVVFKLYDTHGFPVDLTADIARERNLE-VDYQGFEA 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQR RARA S   G+              G ++F GY+ L                 
Sbjct: 417 RMAEQRERARAASRFGGA-------REEVVDAGESRFTGYETLED--------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V  + Q G  V+    G++  VV D+TPFYAE+GGQ+GD G  + +G+R
Sbjct: 455 --------VGSVIGLYQDGRSVQRLQPGEEGMVVLDRTPFYAESGGQVGDRGEILANGLR 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D  K+ E    H   +E G L     +   +D   R     NHSATHLLH AL  I
Sbjct: 507 FRVADTVKQGEA-HGHLGRLESGELGVGDQVTARVDRGTREATVRNHSATHLLHAALREI 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD LRFD +H +  +  +L+ IE  VN  I  N PV    M  E+A+
Sbjct: 566 LGDHVQQKGSLVAPDRLRFDFSHYEAPSREDLERIEARVNQEILTNHPVEAAHMAYEEAV 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRV+S+     G +S  LCGGTH + TG+I L  I+ E+ +  G+
Sbjct: 626 QVGAMALFGEKYGDTVRVISL-----GDYSQELCGGTHAARTGDIGLFKIIDETGVAGGV 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITG+RA   +   + +L  LA  L+V   N+V +VE++ E  R+ +    + K +
Sbjct: 681 RRIEAITGERAIGWVQEAEGRLNRLADLLRVGPDNLVMKVEQLSERTREQEKEIERLKQK 740

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +          ++A V F++  +     K L+  +D L+ ++ SG+I+L  +  E K
Sbjct: 741 LATQAGRSLLDDAGEVAGVRFLATCVEG-GGKGLRDTLDQLKNQLGSGVIVLAAVQGE-K 798

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT+DL DR  A DL    A  + GG GGGR   AQ+GG + +  + A+A V ++
Sbjct: 799 VQLVAGVTKDLTDRLAAGDLVNHVAAQV-GGRGGGRADFAQAGGKDPSHVNDALASVEAW 857

Query: 896 LK 897
           +K
Sbjct: 858 IK 859


>gi|77464020|ref|YP_353524.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
 gi|123591443|sp|Q3J0R1|SYA_RHOS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77388438|gb|ABA79623.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1]
          Length = 883

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/874 (49%), Positives = 569/874 (65%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G     A +GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 463 ------EQAEGQVLALVAAGAETASAGAGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ + +  +         +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|328543180|ref|YP_004303289.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum
           SL003B-26A1]
 gi|326412926|gb|ADZ69989.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase,
           DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum
           SL003B-26A1]
          Length = 887

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/895 (52%), Positives = 615/895 (68%), Gaps = 38/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KNGH+++ S  L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSAFLDYFAKNGHQVVESGPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRDYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKEF L
Sbjct: 61  AATSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+ ED+EA  LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 AKDRLLVTVFAEDDEAHGLWKKIAGFSDDRIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+ E+G+R+IEIWNLVFMQ+EQ   Q R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 EHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQTP-QARLPLPRPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI AS   TG++ +G+   +HRVI DHLRSS FLIADG+LP+NEGRGY
Sbjct: 240 VHDNYDIDLFRALISASVNATGVEADGSARASHRVIADHLRSSCFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRR M +A LLG  EPLM  L+PAL  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 300 VLRRIMRRGMRHAHLLGAQEPLMWRLVPALIREMGRAYPELVRAEALITETLRLEEGRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD     L +   L+G+ AF+LYDT+G PLD+ QD L ARG+ G+D   F 
Sbjct: 360 KTLERGLGLLDAATVDLSEGGELDGETAFRLYDTYGFPLDLTQDALRARGI-GVDTAGFA 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA   G G   T+ +WF LKEK GAT+F+GY+  R               
Sbjct: 419 AAMERQKAEARAAWAGSGEAATDAVWFGLKEKCGATEFLGYEAER--------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G  V E  +GQ    VF+QTPFY E+GGQ+GDTG     G+
Sbjct: 464 --------AEGAVAALVADGREVSELATGQSGFAVFNQTPFYGESGGQVGDTGSLHALGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++TD QKKA+G+FVH   VE G L   ++L + +D   R  +  NHSATHLLH AL  
Sbjct: 516 KARVTDTQKKADGLFVHAVTVEEGTLSVGLALDMIVDPDRRTAIRSNHSATHLLHEALRE 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP++  ELK +ED  N+I+ QN  V TR+M  ++A
Sbjct: 576 VLGGHVAQKGSLVSPERLRFDFSHPKPMSEDELKVVEDYANEIVLQNAAVETRLMAVDEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           I SGA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ +V+E 
Sbjct: 636 IESGAMALFGEKYGDEVRVVSMGTALHGDKAGKAYSVELCGGTHVRRTGDIGLVRLVTEG 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG  AR++L  QD +++ LA  LKV   +V  RV ++ E+ R+L+   
Sbjct: 696 AVAAGVRRIEALTGPVARAYLDEQDARVRELAGLLKVGAADVTARVAQLVEDRRRLEREL 755

Query: 775 AKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           A+ K +L +              +  +  M+ I+  ++ K+LK + D    ++ SG+++L
Sbjct: 756 AEAKKKLAMGGGGGEAGAAVVKMVGSLRLMARIVEGINPKDLKGLADETMAQVGSGVVVL 815

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + ++++ KA+++  V++DL DR +AVDL RL ++ LGG GGGGRP MAQ+GGP+G
Sbjct: 816 ISVAEDGKAAIVTAVSKDLTDRVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDG 870


>gi|254226851|ref|ZP_04920422.1| alanyl-tRNA synthetase [Vibrio cholerae V51]
 gi|125620648|gb|EAZ49011.1| alanyl-tRNA synthetase [Vibrio cholerae V51]
          Length = 860

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/907 (42%), Positives = 545/907 (60%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  +    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEISTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFYVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|58582562|ref|YP_201578.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624448|ref|YP_451820.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575923|ref|YP_001912852.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|75434894|sp|Q5GYM8|SYA_XANOR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123521587|sp|Q2P1N1|SYA_XANOM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830287|sp|B2SUD0|SYA_XANOP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58427156|gb|AAW76193.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368388|dbj|BAE69546.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520375|gb|ACD58320.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 882

 Score =  967 bits (2500), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/909 (43%), Positives = 538/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGRGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPT 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVAS--RSQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFECAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYEAYDADALR----- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 475 -----------------VVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++LQ   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLQREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          +   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVSGVNGSPTGKVKAGELLSNIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|207728244|ref|YP_002256638.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein
           [Ralstonia solanacearum MolK2]
 gi|206591490|emb|CAQ57102.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein
           [Ralstonia solanacearum MolK2]
          Length = 893

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/917 (41%), Positives = 536/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 14  MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 73

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 74  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 134 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 194 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 371

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 372 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 431

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 432 ENDVI-VDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLV-- 482

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 483 --------------------RETARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 523 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 583 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 643 AQTAAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 697 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 756

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 817 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 875 PDKLPQALAGVTAWVQQ 891


>gi|21242491|ref|NP_642073.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
 gi|24418694|sp|Q8PLQ0|SYA_XANAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21107940|gb|AAM36609.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 882

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/909 (43%), Positives = 538/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDVIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLIGKAGSLTGVADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALSAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVAS--RSQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSVEVADTQKFAGQFHGHVGRISEGALALGDVLAGEIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|294626627|ref|ZP_06705224.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294665630|ref|ZP_06730907.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292599047|gb|EFF43187.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292604576|gb|EFF47950.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 882

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/909 (43%), Positives = 538/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVAS--RSQDIIPGVDAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V AI++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|198283180|ref|YP_002219501.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667664|ref|YP_002425409.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247701|gb|ACH83294.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519877|gb|ACK80463.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 877

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/904 (43%), Positives = 536/904 (59%), Gaps = 39/904 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +IR  FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E   Y+  
Sbjct: 1   MQAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L 
Sbjct: 61  VSSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITVY+ED+EA  +W    G+   ++ R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PEKLWITVYEEDDEAADIWMNEIGIDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGG PGS  E+G+RYIEIWNLVFMQF++ +      LPK S+DTGMGLER+A VLQ  
Sbjct: 181 HIPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NNYD DLFK LI A+  ++G  Y  +    ++ RV+ DH+R+ SFLI DG+LPANEGRG
Sbjct: 241 HNNYDTDLFKPLIAAAATISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + R LG        L+  L  EMGSA+PEL +A+  +E  L  E+ RF
Sbjct: 301 YVLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RGL LL+  ++ L     + G++ F+L DT G P+D+  DI   R L   D+  +
Sbjct: 361 RETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLIM-DMEGY 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+ EQRSR+RA   G G   TE+++  L  +   T+F GY                  
Sbjct: 420 EAAMAEQRSRSRAAWAGSGEVKTERVYHDLAMRLPVTEFTGYSTCAD------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V A+++ GE V    +G    V+ D+TPFY E+GGQ GD G    D 
Sbjct: 467 ----------EGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSDD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +TD QK    + VH   +E G LR    +V +ID   RR  + +HSATHLLH AL 
Sbjct: 517 ALFAVTDTQKPMGHLHVHLGRMESGRLRVGDMVVASIDEVARRATAAHHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILGSHV Q GS + P+ LRFD +  +P+T+A+L+ IE  VN  I  N+   TRI+   +
Sbjct: 577 NILGSHVQQKGSLVNPERLRFDFSQPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV +     G  S  LCGGTHV + G+I +  I+SES + A
Sbjct: 637 AQALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG  A   +   +E+L++ A  LKV+   +  R+ +  E  R+L+    K K
Sbjct: 692 GIRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVK 751

Query: 779 -----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                            +  V  +   +  +D K L+  +D L+ ++  G+I+L G+ +E
Sbjct: 752 RDEAARAGADLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVERE 811

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++  V + L  R +A +L    A+ L GG GGGRP +AQ+G  N    D A+A   
Sbjct: 812 -KVALIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGNPAALDAALAAAR 869

Query: 894 SFLK 897
            ++K
Sbjct: 870 DWVK 873


>gi|170743900|ref|YP_001772555.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|205830146|sp|B0UGC4|SYA_METS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168198174|gb|ACA20121.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 886

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/893 (50%), Positives = 606/893 (67%), Gaps = 35/893 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFAKHGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW+L+TKEF L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY +D++A  LW+KI+G   ++IIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 DRSKLLVTVYADDDDAATLWRKIAGFPEERIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PELWGGPPGSPEEDGDRFLEFWNLVFMQYEQIEPGNRVGLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A     G   EG    ++RVI DHLR++SFL+ADG+LP NEGRGY
Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRPPEGAQTASYRVIADHLRAASFLVADGVLPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +P+M  L+P L  EMG AYPEL++A+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELVRAESLISETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +LD     L + + L+G+ AF LYDT+G PLD+ QD L +RG+ G+D  +F 
Sbjct: 361 RTLERGLSILDAETRDLSEGQNLSGETAFTLYDTYGFPLDLTQDALKSRGI-GVDTDAFK 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G   TE +W++L+E+ GAT+F+GY+                  
Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWYALRERVGATEFLGYEA----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G  VE   SG++  +V  QTPFY E+GGQ+GDTG     G+
Sbjct: 463 ------ETAEGVVTALVRGGVEVEALASGEEGLLVVSQTPFYGESGGQVGDTGTVAAAGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++TD +KK   +FVHH  VE G L    ++ L +D+  R  +  +HSATHLLH AL  
Sbjct: 517 RARVTDTEKKLGDLFVHHVAVEEGRLTVGQAVELRVDHARRAAIRAHHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H KP+   E+ ++E+  N ++ QN PVVT++M  +DA
Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEEMANRVLLQNGPVVTKLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714
           IA+GA AL G KY D VRVVS+  + GG       S  LCGGTHV  TGEI L+ +V E 
Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEDQGGDGRRRTFSVELCGGTHVGRTGEIGLITVVGEG 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           ++ +G+RRIEA+TG  AR HL  +  +L ++A  LKV       R+  + E+ R+L+   
Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAVAGLLKVPPAEAADRLAALIEDRRRLEREL 756

Query: 774 -HAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+RKL +      +    ++A V  M+  +  V+ ++LKS+ D  +K++ SG++ +VG
Sbjct: 757 SEARRKLAMGGGGAGEEPVREVAGVKLMARSVEGVEMRDLKSLADEGKKRLGSGVVAIVG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           ++ + KA +++ VT+DL DRF+AV L R  ++ LGG GGGGR  MAQ+GGP+G
Sbjct: 817 VAPDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPDG 869


>gi|330966776|gb|EGH67036.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 874

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/894 (43%), Positives = 534/894 (59%), Gaps = 56/894 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS    G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASANAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP++EGRGYVLRRI+RRA  +   LG        ++ AL TEMGSA+PEL+Q +  IE  
Sbjct: 298 LPSSEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +++  L+ L K  ++ G++ FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEEGFEREMEAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G  +    R  ++D  K   G F+HH +V  G L   + +   +  + R    +NHSAT
Sbjct: 507 SGFLLAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PVV
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVV 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +L G   E K  ++  VT+DL  +  A DL + +A  + GG GGGRP MAQ GG
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGG 853


>gi|294788161|ref|ZP_06753404.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483592|gb|EFG31276.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 873

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 554/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  +L+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKYLQFFESKGHQIVRSSSLVPHNDPTLLFTNAGMNQFKDVFLGFDKRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIHYAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY ED+EA+ +W K  GL  +KI+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLLVTVYAEDDEAYNIWHKEIGLPENKIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEHIWGGIPGSPEEDGDRWIEIWNNVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF++L++A  + TG+++   ++ + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQGVHSNYEIDLFQNLLKAVARETGVEF-SMDVPSLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGDAYPELREKQTQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+VLL+  LS  G  + LNG++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KAEETRFAQTLETGMVLLENALS--GSLKRLNGEIIFKLYDTYGFPYDLTADICREREVE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   FN+A++EQR+RARA           K    L      TQF GY   +       
Sbjct: 418 M-DEDGFNKAMDEQRARARAAQ-------NFKANTQLDYNGQDTQFKGYSERK------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           V++ V A+ +  E V E   G+   +V DQTPFYAE+GGQ+GD 
Sbjct: 463 ----------------VNATVIALYKDSEAVTELHEGETGAIVLDQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R ++ D QK    +F    +   G L+   S++  ID   R     NHSATH
Sbjct: 507 GYILAGENRFEVRDTQKIKAAVFGQFGVQVSGSLKVGDSVLAEIDNDIRDANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS +T +  RFD++H++ IT  E+  +E  VN  I  N+ V  
Sbjct: 567 LMHKALREVLGNHVEQKGSLVTAESTRFDISHNQAITPEEIAEVERRVNTAILANVAVDA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHV+ TG+I L  I+
Sbjct: 627 NIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GEFSTELCGGTHVARTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SES I AG+RR+E ITG  A      Q+  LK++ S +K   + +V+ +++    + + L
Sbjct: 682 SESGIAAGVRRLEVITGLNALRWAQNQETLLKNIISEVKAQTEKDVLSKIQANANQTKAL 741

Query: 771 QLIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIM 826
           +   AK K +L             D+  +S +++++D++   L+ ++  L  K    +++
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGTVSLVVAQIDAEASALRDIVTDLTGKSDKAVVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTAKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKLP 859

Query: 887 QAIAGVASFL 896
           + +A V +++
Sbjct: 860 ETLASVENWV 869


>gi|205830256|sp|A4XWE2|SYA_PSEMY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/913 (44%), Positives = 557/913 (61%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+++W K  G+ A+++IRI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIFFD GE I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ AS +  G   EG    + +V+ DH+RS SFLIADG+
Sbjct: 240 ERISAVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL Q +  IE  
Sbjct: 298 TPSNEGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ GD+ FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLKILEQDLAGL-QGSVIPGDIVFKLYDTYGFPVDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D   F + +E QR RAR+ S           + +L +    T+F+GY+   GS    
Sbjct: 417 S-VDEEGFEREMEAQRERARSAS------AFGMDYNALVKVDADTRFLGYEGTSGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G  V+    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 466 -------------------GKIIALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G     G+R  + D  K A G F+HH +V +G L    S+    +   R+  ++NHSAT
Sbjct: 507 CGYLESAGMRFDVRDTTK-AGGAFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +LK +ED VN  I +N  V 
Sbjct: 566 HLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + E A A GA AL G KY D+VRV+S+    GG  S  LCGGTHVS TG+I L  I
Sbjct: 626 TEETDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG  A + L   +E+LK  AS +K S+ NV+ ++  + E  R+L
Sbjct: 682 TSEGGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +      +        +     ++  +  +D K L +++D L+ K+ SG+I
Sbjct: 742 EKELEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  ++K  ++  VT+DL  +  A DL R +A  +GG GG GRP MAQ GG +  K 
Sbjct: 802 LLGGVF-DEKVVLVAGVTQDLTAKLKAGDLMRQAAAAVGGKGG-GRPDMAQGGGVDAGKL 859

Query: 886 DQAIAGVASFLKK 898
           D+A+A  A+F+++
Sbjct: 860 DEALALAATFVEQ 872


>gi|85374371|ref|YP_458433.1| alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|122544241|sp|Q2N9K5|SYA_ERYLH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84787454|gb|ABC63636.1| AlaS, alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 887

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/907 (48%), Positives = 594/907 (65%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FL++F   GH  + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MQSTNDIRRSFLDYFTGAGHAEIASAPLVPYNDPTLMFVNAGMVPFKNVFTGLETPPAPT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+ AW LLT+E+ +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIEHAWTLLTREWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL  TVY  D+EA+  W+KI+GL  ++IIRI T DNFW+M + GPCGPCSEIFFD G
Sbjct: 121 DAARLTATVYHTDDEAYDFWRKIAGLPEERIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R++E+WNLVFMQ EQ   +    LP  +IDTGMGLER+A V+Q 
Sbjct: 181 DHIFGGPPGSPEEDGDRFVEVWNLVFMQHEQTGGEITGDLPNKNIDTGMGLERIAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +TG+K EG+   +HRVI DHLRS+SFLIADG+LP++EGRGY
Sbjct: 241 VHDNYDTDTFKELIGASEGLTGVKAEGDQAASHRVIADHLRSTSFLIADGVLPSSEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG +EPLM  L+PAL TEMG AYPEL + + LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVTEMGQAYPELTRGQALIEETLEREEARFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     + + + L+G+ AFKLYDT+G P D+ +D L  RG+A +D   F 
Sbjct: 361 QTLEKGLRLLDDATGDMSEGDTLDGETAFKLYDTYGFPYDLTEDALRPRGIA-VDETGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  ARA   G G     ++WF + E+ GAT+F GY    G              
Sbjct: 420 SAMQRQKDAARAAWKGSGQAADSEVWFDIAEREGATEFTGYTSTSG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                       V A+V+ G+ V+ A +G +V ++ +QTPFY E+GGQ GD G     DG
Sbjct: 466 ---------EGRVVALVKNGKEVDSASAGDEVVILTNQTPFYGESGGQTGDAGTMSTPDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++++TD  K    +  H A ++ G +    +L L +D   R ++  NHSATHL+H AL 
Sbjct: 517 VKVEVTDTGKPLGRLHTHQAKIQSGTVLKGDTLHLDVDVDRRDRVRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD +H KP++  ++ +IE  VN+ I  N  V TR+M+ +D
Sbjct: 577 NRLGEHVTQKGSLVAEDRLRFDFSHPKPLSEDDIAAIEAEVNEEIRANETVTTRLMSPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+ +GA AL G KY + VRV+S+    ++G  +S  LCGGTHV +TG+I L  I+SES++
Sbjct: 637 AVDAGALALFGEKYGEEVRVLSMGRRSKEGRNYSVELCGGTHVRATGDIQLFRIISESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG  AR  L+ ++E LKS AS L+ +   V  RV  + +E + L+   A 
Sbjct: 697 SSGVRRIEALTGDAARQWLVRREEALKSAASALRTNPEEVAERVAALLDERKALEKELAD 756

Query: 777 RKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + QL        V       I DV F   +I+ ++ K+L+ ++D  ++++ SGI  +  
Sbjct: 757 ARKQLALGGGGSQVAQSQDETIGDVTFSGQVINGLNPKDLRGLLDEAKQRMGSGIAAICA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  E KA+    VT+DL DR+NAVDL R   +VLGG GGGGRP MAQ GGP+G KA+ A+
Sbjct: 817 V-NEGKAAFAAAVTDDLTDRYNAVDLVRAGVEVLGGKGGGGRPDMAQGGGPDGLKAEAAL 875

Query: 890 AGVASFL 896
             V   L
Sbjct: 876 NAVRERL 882


>gi|289662681|ref|ZP_06484262.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669644|ref|ZP_06490719.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 882

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/909 (43%), Positives = 536/909 (58%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVAS--RSQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GYD             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYDAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG   E A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPAERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L              +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAGAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDAVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGYIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|90020946|ref|YP_526773.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123396361|sp|Q21L68|SYA_SACD2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89950546|gb|ABD80561.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40]
          Length = 875

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/912 (43%), Positives = 557/912 (61%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL++F+  GH  + SSSL+P NDPTL+FTN+GMV FK++F GQ+   Y  
Sbjct: 1   MKS-AEIREAFLQYFESKGHSRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDNRSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAINYAWEFLTSKEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            +   +L +TVY +D+EA+ +W    G+  D+IIRI  N       DNFW+M +TGPCGP
Sbjct: 120 AIPTEKLCVTVYADDDEAYGIWANDVGVPEDRIIRIGDNKGGRYNSDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE I GG PG   E+G+R+IEIWN+VFMQF +    E   LPK S+DTGMGL
Sbjct: 180 CTEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNVVFMQFNRSVDGEMAPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A V+Q   +NY+IDLF+ L++A+ Q    + E  +  + RVI DH+RS +FL++DG+
Sbjct: 240 ERIAAVMQHVHSNYEIDLFQALLEAAAQA--TQAEDKDAKSLRVIADHIRSCAFLVSDGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG T+P    L+ AL  +MG AYPEL++ +  IE+ 
Sbjct: 298 LPSNEGRGYVLRRIIRRAVRHGNKLGQTKPFFHTLVAALVEQMGEAYPELVRDQASIEKV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+++F KTL++G+V+L+  LS L K  I+ G+V F LYDT+G P+D+  DI   R L
Sbjct: 358 LAAEEDQFAKTLEKGMVVLESALSEL-KGTIIPGEVIFTLYDTYGFPVDLTNDIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  ++  +E+Q+ RAR       SG+ +  + +     G T F+GY  L G     
Sbjct: 417 T-LDMDGYDALMEQQKKRARE------SGSFKVDYSATATIEGHTNFVGYSELTGD---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V AI+  GE V+    GQ   +V D TPFY E+GGQ GD
Sbjct: 466 -------------------ASVTAILVDGENVDTLTEGQSGVIVLDTTPFYGESGGQAGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG  + DG + ++ D QK      +H   +  G ++        +D   R+  ++NHSAT
Sbjct: 507 TGYIVFDGAKFEVQDCQKSGAN-HLHVGQLLAGAVKVGDKAQPVVDSAVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS +  + LRFD +H + +   ELK IE  VN+ I  N PV 
Sbjct: 566 HLLHAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVKPEELKQIESMVNEQIRLNSPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A   GA AL G KY D VRV+S+    GG  S  LCGGTHVS TG+I L+ I
Sbjct: 626 TELCDMEAAQQKGAMALFGEKYGDEVRVLSM----GGAFSVELCGGTHVSRTGDIGLIRI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SES I +G+RRIEA+TG++A S +    + L + A  LK S  N++ +VE++  + R+L
Sbjct: 682 TSESGIASGVRRIEAVTGEKALSVIDASADTLNAAAKLLKASPENLLDKVEQLIAQNRQL 741

Query: 771 Q--LIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  L  AK KL  +  D        IA V  ++  +  VD+K L+ +MD L+ K+ +  +
Sbjct: 742 EKSLAAAKSKLASSSADEWLSEATDIAGVKVLAKAVEGVDAKSLRDMMDKLKNKLGTSAV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  V++D   +  A D+ +  A ++GG GG GRP MAQ GG +    
Sbjct: 802 ILASV-NDDKISLVAGVSQDATSKIKAGDMVKHVAGLIGGKGG-GRPDMAQGGGTDVEAL 859

Query: 886 DQAIAGVASFLK 897
             AI  V  + K
Sbjct: 860 PAAIGSVLDWAK 871


>gi|84500806|ref|ZP_00999041.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
 gi|84390873|gb|EAQ03291.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597]
          Length = 892

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/899 (49%), Positives = 574/899 (63%), Gaps = 43/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F++ GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MQSLNDIRSTFLNYFKRQGHEIVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELVTKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EA  +WKK++GL  D+IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTADNFWQMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS  E+G+R+IEIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 181 DKFWGGPPGSPEEDGDRFIEIWNLVFMQYEQFEDGTRRELDAQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T  + +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRALIEASAHQTSSEPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPLMHRLVPELVRQMGEAYPELRQAQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS L +D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLKLLDDELSGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF L +++GAT F+GYD                  
Sbjct: 420 SAMAEQKAKARAAWAGSGESADLSVWFDLADQHGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA---IG 536
                       + A+++ GE VEE  SG++  +V +QTPFY EAGGQ+GDTG       
Sbjct: 463 ------ETAEGQILALIRDGEQVEELKSGEQGWIVTNQTPFYGEAGGQVGDTGWIRRLEN 516

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +     +TD QK   G I+ H+  +++G  R   ++ L +D+  R  +  NHSATHLLH 
Sbjct: 517 EDEIATVTDTQKMGAGRIYAHNVTIDQGSFRASDAVALEVDHGRRATIRANHSATHLLHE 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   PD LRFD +HS  ++  EL  IE +VN  I QN PV TRIM 
Sbjct: 577 ALREALGDHVAQRGSLNAPDRLRFDFSHSAALSPEELARIERDVNAFIRQNTPVETRIMT 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYE------DGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA   GA AL G KY D VRVVS+  +       G  +S  LCGGTHV+ TG+I    
Sbjct: 637 PDDARGLGAQALFGEKYGDEVRVVSMGQKATGKGAGGNTYSIELCGGTHVARTGDIGAFA 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + SE++  AG+RRIEA+TG+ A + L G+D  L  +   LK +   VV RV+ + +E R 
Sbjct: 697 LTSETASSAGVRRIEALTGEAALAELRGRDTALAQIEGMLKATGPEVVSRVKAMMDERRA 756

Query: 770 LQLIHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ +  L +   +         +I  V F++  +S V  K+L +++D  + +I S
Sbjct: 757 LQNEVAQLRRDLAMSGGAGQGGGAETREINGVKFLAQSLSGVSGKDLPALIDQFKDQIGS 816

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           G ++L+      KA+V   VT DL DR +AVDL R +   LGG GGGGRP MAQ GG +
Sbjct: 817 GAVLLIA-DTGGKAAVAAGVTPDLTDRLSAVDLVRAAVPELGGKGGGGRPDMAQGGGAD 874


>gi|258623515|ref|ZP_05718516.1| alanyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|258584177|gb|EEW08925.1| alanyl-tRNA synthetase [Vibrio mimicus VM573]
          Length = 860

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/912 (42%), Positives = 542/912 (59%), Gaps = 69/912 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATH
Sbjct: 509 GVLKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I 
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  ++  Q              Q     +V E+  + + L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYIEAQ--------------QAQHDAKVVEMAAKAKLLE 728

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L  ++         +IA VN +   ++  D+K L+ ++D L+ ++ SGIIM
Sbjct: 729 KEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIM 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +   
Sbjct: 789 L-GNIAEGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALP 846

Query: 887 QAIAGVASFLKK 898
            A+  V +++ +
Sbjct: 847 SALESVDAWIAE 858


>gi|262401750|ref|ZP_06078316.1| alanyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262352167|gb|EEZ01297.1| alanyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 860

 Score =  966 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/912 (42%), Positives = 542/912 (59%), Gaps = 69/912 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+ +  G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAAEAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEKAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATH
Sbjct: 509 GVLKTEAGIFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSI-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  ++  Q              Q     +V E+  + + L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYIEAQ--------------QAQHDAKVVEMAAKAKLLE 728

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L  ++         +IA VN +   ++  D+K L+ ++D L+ ++ SGIIM
Sbjct: 729 KEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIM 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT DL  +  A +L  + A  + GG GGGRP MAQ+GG +     
Sbjct: 789 L-GNVADGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAQALP 846

Query: 887 QAIAGVASFLKK 898
            A+  V +++ +
Sbjct: 847 SALESVDAWIAE 858


>gi|262172368|ref|ZP_06040046.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|261893444|gb|EEY39430.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 860

 Score =  966 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/912 (42%), Positives = 542/912 (59%), Gaps = 69/912 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATH
Sbjct: 509 GVLKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I 
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  ++  Q              Q     +V E+  + + L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYIEAQ--------------QAQHDAKVVEMAAKAKLLE 728

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L  ++         +IA VN +   ++  D+K L+ ++D ++ ++ SGIIM
Sbjct: 729 KEIQQLKDKLAAKESSGLINQVKQIAGVNVLVAELNGADNKALRGMVDDIKNQLGSGIIM 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +   
Sbjct: 789 L-GNVAEGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALP 846

Query: 887 QAIAGVASFLKK 898
            A+  V +++ +
Sbjct: 847 SALESVDAWIAE 858


>gi|188991930|ref|YP_001903940.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|205830286|sp|B0RTY1|SYA_XANCB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167733690|emb|CAP51895.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 882

 Score =  966 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 540/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVAS--RSQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVATMAPTVFLGYEAQDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  I +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDISIEVADTQKFAGQFHGHVGRIAEGTLKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   AS    +   +V +V  + +  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAASLFGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AA-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|260752686|ref|YP_003225579.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552049|gb|ACV74995.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 890

 Score =  966 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/914 (49%), Positives = 596/914 (65%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 1   MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G+VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +GS             
Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKGS------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                       + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G+  
Sbjct: 467 ----------GQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756

Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A  +  L + + +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 757 LADAQKALALANANGGQGSNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ +  E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 817 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 876 AAQALEAVKALLEK 889


>gi|300704797|ref|YP_003746400.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299072461|emb|CBJ43811.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 880

 Score =  966 bits (2496), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/917 (41%), Positives = 536/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 419 ENDVI-VDEAAFDAAMNRQREQARAAGKFKMTAGT------LDYTGDKTTFHGYDQLVRD 471

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 472 ----------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 630 AATNAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRVSEAAAALRAQPSELTQRIVQVQDQ 743

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 744 VKSLEKELERLKSKLAASQGDELVEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 862 PDKLPQALAGVTAWVQQ 878


>gi|87199300|ref|YP_496557.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
 gi|123489936|sp|Q2G8V0|SYA_NOVAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|87134981|gb|ABD25723.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444]
          Length = 881

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/891 (49%), Positives = 594/891 (66%), Gaps = 33/891 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FLE+F  NGH+++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E      
Sbjct: 1   MTSTNEIRRSFLEYFGSNGHDVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAVPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+E+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L  TVY  D+EAF+LWKKI+GL  D+IIRI T DNFW+M + GPCGPCSEIFFD G
Sbjct: 121 PKDKLLATVYHTDDEAFELWKKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ   +    LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGEITGSLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYD D FK LI ASE +T ++ EG++  +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 EHDNYDTDTFKALIAASESLTSVRAEGDHKASHRVIADHLRSTSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  EMG+AYPEL +A+ LIEETL  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVAEMGAAYPELGRAQPLIEETLLREEVQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  G+ LLD   + LG+ + L GD AFKLYDT+G P D+ +D L ARG+A +D   F+
Sbjct: 361 RTLSNGIKLLDEATATLGEGDKLPGDTAFKLYDTYGFPYDLTEDALRARGIA-VDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G     ++WF + E+ GAT+F GY    G              
Sbjct: 420 AAMAQQKAAARAAWKGSGQAADSEVWFDIAERVGATEFTGYTATTG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                     + V A+V+ G+ V+ A++G  V V+ +QTPFY E+GGQ GD G    GDG
Sbjct: 466 ---------EAQVVALVKDGKEVDSAMAGDDVAVIVNQTPFYGESGGQTGDAGTITGGDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + L ++D  K    +  H+A V+ G ++    + L ID   R  +  NHSATHLLH AL 
Sbjct: 517 LVLAVSDTAKPLGRLHAHNAKVQSGSVKVGDVVRLDIDVARRDAIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS +  D LRFD +H   +++ ++ +IE  VN  I  N  V TR+M+ ED
Sbjct: 577 HRLGAHVTQKGSLVAADRLRFDFSHPTALSAEDIAAIEAEVNAEIRANEVVTTRLMSPED 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D VRV+S+       +S  LCGGTHV + G+I +  IVSES++ +
Sbjct: 637 AIEAGAMALFGEKYGDEVRVLSMGRVADKHYSVELCGGTHVRALGDIGVFRIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR   + +++ LK+ AS L+ +  +V  RV  + +E +KL+   A+ K
Sbjct: 697 GVRRIEALTGEGARQWFVAREDALKNTASILRTTPEDVEARVTALMDERKKLERELAEAK 756

Query: 779 LQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             L +   S         +  V F   ++  +D K+L+ ++D  ++++ SG+ ++V +  
Sbjct: 757 KALALGGGSAKAENADEDVNGVKFSGQVLEGLDPKDLRGLLDQAKQRLGSGVAVIVAV-N 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           E KAS+   VT+DL  + +AVDL R   + LGG GGGGRP MAQ GGP G+
Sbjct: 816 EGKASIAAAVTDDLAGKVSAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGS 866


>gi|262164028|ref|ZP_06031767.1| alanyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262027556|gb|EEY46222.1| alanyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 860

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/912 (42%), Positives = 541/912 (59%), Gaps = 69/912 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDETGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATH
Sbjct: 509 GVLKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+ E+K +E  VN  I +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I 
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIT 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  ++  Q              Q     +V E+  + + L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYIEAQ--------------QAQHDAKVVEMAAKAKLLE 728

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L  ++         +IA VN +   ++  D+K L+ ++D L+ ++ SGIIM
Sbjct: 729 KEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIM 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +   
Sbjct: 789 L-GNVAEGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALP 846

Query: 887 QAIAGVASFLKK 898
            A+  V +++ +
Sbjct: 847 SALESVDAWIAE 858


>gi|311694210|gb|ADP97083.1| alanyl-tRNA synthetase, class IIc [marine bacterium HP15]
          Length = 876

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/912 (43%), Positives = 552/912 (60%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL++F++ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   
Sbjct: 1   MKTAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREERDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT     +
Sbjct: 61  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWTFLTGENWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L Q +L++TVY ED+EAF +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPQEKLWVTVYAEDDEAFDIWNKEIGVPADRIVRIGDNKGGRYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLKLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ L+ A+ Q+ G         + RV+ DH+RS +FLIADG++
Sbjct: 241 RITAVLQGVHSNYEIDLFQDLLAAASQILGGA--ATTEASLRVVADHIRSCAFLIADGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG T P    L  ALC  MG A+P+L+ ++  IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATGPFFYKLTGALCELMGEAFPQLVSSRKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+GL LL+  ++ L   E + G+  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAELKGTE-IPGETIFTLYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S          +        G T+F GY+ + G +    
Sbjct: 418 -LDYEGYEKAMEGQRERARAASKFGIDYNAAGLQLE-----GKTEFTGYEHIDGHE---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               ++A++  GE  + A +G +  VV ++TPFYAE+GGQ+GDT
Sbjct: 468 -------------------KIRAVIVNGEE-KTAEAGDEAVVVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R ++TD +K+ +   +H   +  G L   + +   ID+  R +   NHSATH
Sbjct: 508 GLLTWSGGRFKVTDTRKEGDN-HLHLGTLIEGELFPGLEVDARIDHARRERTKRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS + PD LRFD +H + +T  +L+ IE  VN+ I +N PV T
Sbjct: 567 LLHAALRKVLGEHVSQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILENSPVQT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + E A   GA AL G KY D VRV+S+  ++   +S  LCGGTHVS TG+I L  I 
Sbjct: 627 EITDMEKAQEKGAMALFGEKYGDVVRVLSMGTDN---YSVELCGGTHVSRTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   + G +  L+  A  +K S+ +V+ +V++  +  R+L+
Sbjct: 684 SESGISSGVRRIEAVTGMGALDWIDGTERTLREAARLVKGSRESVIEKVQQTIDRNRQLE 743

Query: 772 LI--HAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +          DV  +  +   +   D K L    D L+ K+  G+++
Sbjct: 744 KEVDALKAKLASSAGTDLASTAVDVGGLKVVASELEGADRKALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K +++  VT+    R  A DL +  A  +  G GGGRP MAQ GG + +K +
Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRIKAGDLMKHLAAQV-DGKGGGRPDMAQGGGNDPSKLE 861

Query: 887 QAIAGVASFLKK 898
            A+AGVA +++K
Sbjct: 862 DALAGVAGWVEK 873


>gi|37525217|ref|NP_928561.1| alanyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|41018167|sp|Q7N7A5|SYA_PHOLL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|36784644|emb|CAE13544.1| alanyl-tRNA synthetase (alanine--tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 876

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/910 (42%), Positives = 552/910 (60%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F GQ+K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGKDWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +WK   G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYQTDDEAYDIWKNDVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ LI     VTG   + +N  + RVI DH+RS +FLI DG++
Sbjct: 243 RITAVLQHVNSNYEIDLFRDLITVVANVTGATDDLSNK-SLRVIADHIRSCAFLICDGVV 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MG+A  EL + + ++E+ L
Sbjct: 302 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLLEVMGAAGEELKRQQAVVEQIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D IL+G+ AF+LYDT+G P+D+  D+   R ++
Sbjct: 362 KTEEEQFARTLERGLQLLDDELAKLSGD-ILDGETAFRLYDTYGFPVDLTADVCRERNIS 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR  S G G+   E I    +     + F GYD          
Sbjct: 421 -VDEAGFAVAMENQRRRARESS-GFGTDYNELIKVDER-----SDFSGYD---------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI + GE V +  +G++  V+ D+T FYAE+GGQ+GD+
Sbjct: 464 -------------HNEQQATVTAIFRDGESVNQIQAGEEAIVILDKTAFYAESGGQVGDS 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +E+G L    ++   ID + R  + +NHSATH
Sbjct: 511 GILSNTNCAFCVIDTQKYGQAI-GHIGKLEKGTLSVNHNINAVIDIERRDAIRLNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +   +++ +ED VN  + QN PVVT
Sbjct: 570 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNAEVRQNSPVVT 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A   GA AL G KY ++VRV+S+     G  S+ LCGGTH + TG+I L  I+
Sbjct: 630 ELMDLETAKVKGAMALFGEKYEEQVRVLSM-----GDFSTELCGGTHANRTGDIGLFRII 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG++A   +  Q + L+ +A  +K    ++  +V    +  + L+
Sbjct: 685 AESGTAAGIRRIEAITGKKAVESVHQQVDLLQDIAQLVKSDIHSLSEKVRMTLDRAKALE 744

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   +S  + K L++++D L+ ++ S II+
Sbjct: 745 KELQQLKDQQAAQESSSLASKAKEVKGVKLLVSQLSNTEPKMLRTMVDDLKNQLGSAIIV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  IS + K S+++ VT+DL  +  A +L    A+ + GG GGGR  MAQ+GG +     
Sbjct: 805 LSTIS-DDKVSLIVGVTKDLTAKIRAGELISSVAQQI-GGKGGGRSDMAQAGGSDIEALP 862

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 863 SALDSVEEWV 872


>gi|188581873|ref|YP_001925318.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|205830142|sp|B1ZC90|SYA_METPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|179345371|gb|ACB80783.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 891

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/898 (50%), Positives = 591/898 (65%), Gaps = 40/898 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA  LWKKI+G   DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PALAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E     ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL++++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGRAFPELVRSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDAESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTQAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+  ARA   G G   TE +WF +KE+ GAT+F+GY+                  
Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V A++++G  VE   +G    VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 463 ------ETAEAVVGALLREGGEVETLKAGDSGIVVVNQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T+ +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTNTEKKLGDLFVHHVTVEEGTLSLGAAVELKVDHARRSAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELTRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGV--------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+    +D G          S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGWEVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VIGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +           ++  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREVNGVRLMARVVEGVEMRDLKGLADEGKSRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + +VG+S + KA +++ VTEDL  R++AV L R  A  LGG GGGGR  MAQ+GGP+G
Sbjct: 817 VAIVGVSADGKAGLVVGVTEDLTGRYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGPDG 874


>gi|126726568|ref|ZP_01742409.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704431|gb|EBA03523.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 886

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/911 (47%), Positives = 587/911 (64%), Gaps = 40/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR++FL +F K GH+++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MQTLNDIRSSFLSYFDKQGHQVVDSSPLVPRNDPTLMFVNSGMVQFKNMFTGAETRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFKE AI  AW+++TK   +
Sbjct: 61  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKEDAILFAWEMVTKVLGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  E+G+R++EIWNLVFMQ  Q       +LPK SIDTGMG+ER+A +LQ 
Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQNVQHEDGSMTLLPKQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 241 TNDNYSTDLMRSLIEASANETSSDPDGAGKTHHRVIADHLRSTSFLLADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL ++MG+AYPEL QA+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVSQMGAAYPELQQAQSLITETLKQEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  ++ LG+   L+G  AFKLYDT G PLD+ QD L  +GL G+D   F+
Sbjct: 361 QTLERGLRLLDDEVAGLGEGADLSGSAAFKLYDTFGFPLDLTQDALREKGL-GVDKDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA  +G G      +WF + +++G T F+GYD                  
Sbjct: 420 AAMAEQKAKARAAWVGTGETADASLWFDIADEHGVTDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+++ G  V+  + G  V++V +QTPFYAE+GGQ+GD G       
Sbjct: 463 ------EVAEGQVLALIKDGVSVDATIVGDSVQIVMNQTPFYAESGGQIGDAGTLKTANG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD +K A G+F+HH  V  G +  + +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 LVEVTDTRKNA-GLFIHHGKVVSGTVSKDEAAELVVDHARRGAIRANHSATHLLHEALRG 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HVSQ GS    D LRFD +H+  I+  +L+ +E+ VN  I QN  V TRIM  +DA
Sbjct: 576 ALGDHVSQRGSLNAADRLRFDFSHNAAISQDDLRKVEEEVNAYIRQNTEVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  +       +G  +S  LCGGTHV  TG+I    I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGQQSGSGKGANGETYSLELCGGTHVGQTGDIGTFVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RRIEA+TG  A ++L  QD+++ ++A  LK     V  RV+ + +E + L  
Sbjct: 696 DSASSAGVRRIEALTGAEAFAYLRDQDQRISTVAGMLKAQPEEVGARVKALMDERKSLQN 755

Query: 771 QLIHAKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           QL  A+R L ++        +  ++  V F + +++ V  K+L +++D  ++ + SG ++
Sbjct: 756 QLAEARRSLAMSGGGQSAPAAAIEVGGVKFHAQVLTGVTGKDLPALVDEHKESLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+      KA+V   VT DL++R +AVDL + +   LGG GGGGRP MAQ GG +   ++
Sbjct: 816 LIA-DTGGKAAVAAGVTADLVERISAVDLVKAAVVELGGKGGGGRPDMAQGGGASAENSE 874

Query: 887 QAIAGVASFLK 897
            AI    + LK
Sbjct: 875 NAIKAATAVLK 885


>gi|300692180|ref|YP_003753175.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299079240|emb|CBJ51912.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 880

 Score =  965 bits (2495), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/917 (41%), Positives = 542/917 (59%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GLS ++++RI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWATVYHNDDEAYDIWTKVIGLSPERVVRIGDNKGAPYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A +LQ   +NY+IDLF+ L+ A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALVGAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVEDLVTQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKATGGKMLDGELAFKLHDTYGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +        SL      T F GYD L   
Sbjct: 419 ENDVI-VDEAAFDAAMNRQREQARAAGKFKMAAG------SLDYTGDKTTFHGYDQL--- 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S V A+   G  V+E   GQ   VV D TPFYAE+GG
Sbjct: 469 -------------------LSETSRVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D QK    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDEGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEILAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ SGA AL G KY D VRV+++        S  LCGGTHV+ TG+I 
Sbjct: 630 ASTGAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIGS------SKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRISEAAAALRAQPSELTQRIVQVQDQ 743

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+      K KL     D    +   +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 744 VKSLEKELERLKSKLASAQGDELAEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 862 PDKLPQALAGVTAWVQQ 878


>gi|66768815|ref|YP_243577.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|81305217|sp|Q4UTR6|SYA_XANC8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|66574147|gb|AAY49557.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 882

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 541/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVAS--RSQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVATMAPTVFLGYEAQDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   +V +V  + +  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AA-GGKVALVAGVNGGPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|149378261|ref|ZP_01895973.1| alanyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149357458|gb|EDM45968.1| alanyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 876

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/912 (42%), Positives = 546/912 (59%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL++F++ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+EK  Y   
Sbjct: 1   MKTAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDVFLGREKRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT      
Sbjct: 61  TTTQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGDDWLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EAF +W +  G+ AD+I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLWVTVYASDDEAFDIWNQEVGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G  + GG PGS  E+G+RYIEIWN+VFMQ+ +Q   E   LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRQADGEMLPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDL + L+ A+  + G         + RV+ DH+RS +FLI+DG++
Sbjct: 241 RITAVLQGVHSNYEIDLMQDLLNAASDILGGVETTE--ASLRVVADHIRSCAFLISDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG T+P    L  AL   MG A+P+L+ ++  IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATQPFFHKLTGALVELMGDAFPQLVSSRKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+GL LL+  ++ L   E + GD  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAALESSE-IPGDTIFTLYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S          +        G+T+F GY+ + G +    
Sbjct: 418 -LDYDGYEKAMERQRERARAASKFGMDYNAAGLNIE-----GSTEFTGYEHIDGHE---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               ++ ++  GE  + A +G +  +V ++TPFYAE+GGQ+GDT
Sbjct: 468 -------------------TIRTVIVGGEE-KAAQAGDEAILVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R ++TD QK+     +H   V  G L   + +   ID+  R +   NHSATH
Sbjct: 508 GLLTWSGGRFKVTDTQKEGSN-HLHIGTVIEGELFPGLEVDARIDHARRERTKKNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV+Q GS + PD LRFD +H + +T  +L+ IE  VN+ I  N PV T
Sbjct: 567 LMHAALRNVLGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILDNTPVET 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + E A A GA AL G KY D VRV+S+  +    +S  LCGGTHV+ TG+I L  I 
Sbjct: 627 EITDMEQAQAKGAMALFGEKYGDTVRVLSMGSDA---YSVELCGGTHVARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   +   ++ L+  A  +K S+ ++V +V++  +  R+L+
Sbjct: 684 SESGISSGVRRIEAVTGFGALEWVEETEQTLREAAKLVKGSRESLVEKVQQALDRNRQLE 743

Query: 772 LI--HAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIM 826
                 + KL  +          DV  +  +   +   D K L    D L+ K+  G+++
Sbjct: 744 KDINALQAKLASSAGTDLASSAVDVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K +++  VT+    R  A DL +  A  +  G GGGRP MAQ GG + +K  
Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRVKAGDLMKHLAAQV-DGKGGGRPDMAQGGGNDPSKLA 861

Query: 887 QAIAGVASFLKK 898
            A+AGV ++++K
Sbjct: 862 DALAGVPAWVEK 873


>gi|254230499|ref|ZP_04923872.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262393294|ref|YP_003285148.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151936971|gb|EDN55856.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262336888|gb|ACY50683.1| alanyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 860

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 543/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGVLAEVMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMVILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGYTGTKGS------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q+ K +               + + + +E +KL+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-------KLAESAQKAKALEKEVQKLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A  +    +      ++     +   +   DSK L++++D ++ ++ SG+++L  ++ 
Sbjct: 737 KMAAAESANIMGK--AVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANVTG 794

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG + +   +AI  V
Sbjct: 795 D-KVGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPEAIKTV 852

Query: 893 ASFLKK 898
             +L++
Sbjct: 853 QPWLEE 858


>gi|166712451|ref|ZP_02243658.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 882

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/909 (43%), Positives = 538/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPT 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSTDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ AK  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVAS--RSQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFECAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGRL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ +++ D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALRDVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          +   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDCVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVSGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|145300678|ref|YP_001143519.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|205829973|sp|A4SS99|SYA_AERS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|142853450|gb|ABO91771.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 874

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/910 (41%), Positives = 551/910 (60%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   MSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +TVY+ D+EAF +W    G+  ++I+RI  N       DNFW M++TGPCGPC+E
Sbjct: 123 KERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKGAAFASDNFWQMSDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER+
Sbjct: 183 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+ + ++ G     N   + RVI DH+RS +FLIADG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQ--SLRVIADHIRSCAFLIADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG T+     L   L  +M     ELI    L++  LR 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL+LL+ VL++LG  +++ G+V FKLYDT+G P D+  D++  R + GI
Sbjct: 361 EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GI 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN  +E+QR+RA+  S   G    E +          T F GY  L          
Sbjct: 420 DEEGFNAEMEKQRARAKEAS-SFGVNYNEVLKLDF-----ETPFTGYKQL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I + G  V   ++G++  VV  +TPFYAE+GGQ+GD G 
Sbjct: 464 -------------SQKTSVVGIYKDGVEVNGLIAGEEAVVVLAETPFYAESGGQVGDCGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     +TD QK  + I  H   +E G L     +   +D + R+ +++NHS THLL
Sbjct: 511 LKVDDGIFAVTDTQKAGKAII-HKGYLELGTLEKGALVEAVVDGERRQAVALNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN  I  N  + T++
Sbjct: 570 HAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++E
Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
           S I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q ++  +V +I ++ +  + +
Sbjct: 685 SGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALVKGDQFSIADKVRQILDKSKMMERE 744

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL          ++ ++N    +I      D K L+ ++D L+ +++SG+++L 
Sbjct: 745 LEQLKAKLAAQAGSDLLSQVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGVVLLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 TSS-DDKVNLIAGVTSDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LQSVHSWLEE 872


>gi|149911059|ref|ZP_01899687.1| alanyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805885|gb|EDM65873.1| alanyl-tRNA synthetase [Moritella sp. PE36]
          Length = 873

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/911 (42%), Positives = 530/911 (58%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL++F   GH    SSSL+P NDPTL+FTN+GM  FK++F G E+  Y   
Sbjct: 3   MSTAEIRNAFLDYFASKGHNKGTSSSLVPANDPTLLFTNAGMNQFKDVFLGAEQRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    + 
Sbjct: 63  TTSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAILFAWEFLTVVLKIP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + +L +TVY+ D EAF  W    G+  DKIIRI           DNFWSM +TGPCGPCS
Sbjct: 123 KEKLLVTVYESDNEAFSFWANKVGVPEDKIIRIGDKSPEKKFESDNFWSMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG+PGS  E+G+R+IEIWNLVFMQF +Q       LPK S+DTGMGLER
Sbjct: 183 EIFYDHGEDIWGGVPGSPEEDGDRFIEIWNLVFMQFNRQADGTMEELPKPSVDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+   ++ G     +   + RVI DH+R+ SFLI+DG++P
Sbjct: 243 IAAIMQNVHSNYEIDIFQSLIKHVAELIGTTDLEHK--SLRVIADHIRACSFLISDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG   P    L+  +   MG    +L++ + ++E+ L 
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGPFFNKLVAKMVELMGDISDDLVKQQAIVEKILL 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+FGKTL+RGL +LD  LS L   +++ GDV FKLYDT+G P D+  DI   R L  
Sbjct: 361 IEEEQFGKTLERGLNILDNELSQL-DGKVVPGDVVFKLYDTYGFPSDLTADIARERELT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E QR+RAR  S           +  + +    T+F+GY  L         
Sbjct: 419 IDEDGFKTAMEAQRNRARQGS------NFGTDYNEMLKIDAKTEFLGYQTLTSD------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + A+++    VE    GQ+  +V ++TPFYAEAGGQ GD G
Sbjct: 467 -----------------AQIVALIKDNAEVELLNDGQEGAIVLNKTPFYAEAGGQSGDQG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     +TD +K       H   V  G++     ++  +D   R+ + +NHS THL
Sbjct: 510 VIKIGDAVFTVTDTKKAGNATI-HFGSV-SGVIEVNSQVIADVDVSRRKAIGLNHSVTHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
            H AL  ++G +V Q GS + P+ LRFD +H + +T A+L  +E  VN  I  N  VVT 
Sbjct: 568 AHAALRKVVGDNVQQKGSLVLPERLRFDFSHFEGVTPAQLIEVERLVNAQIRANHEVVTE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ + A  +GA AL G KY+D VRVV +     G  S  LCGGTHV  TG+I    I+S
Sbjct: 628 VMDIDAAREAGAMALFGEKYDDEVRVVRM-----GDFSIELCGGTHVKRTGDIGFFKILS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG+RR+EA+TG  A +++     K++  AS +K  Q  VV +V ++ +  R L+ 
Sbjct: 683 ESGIAAGVRRVEAVTGDSALAYVHDLVAKMQETASLVKADQNTVVAKVSQVLDRNRSLEK 742

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K  +Q+              I  V  +   +   D K L+S MD L+ K+QSGII+L
Sbjct: 743 EVEKLNVQVASAANANLIDQVQVINGVKVLVANLKGADPKSLRSSMDELKNKLQSGIIVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            GI  E K +++  VT+DL+ +  A +L    A  + GG GGGRP MAQ+GG N      
Sbjct: 803 -GIPGEGKVNLITGVTKDLIGKVKAGELVSFLAVQV-GGKGGGRPDMAQAGGSNPEALAA 860

Query: 888 AIAGVASFLKK 898
           A+  V  +L +
Sbjct: 861 ALESVTPWLTE 871


>gi|257454192|ref|ZP_05619462.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257448365|gb|EEV23338.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 890

 Score =  965 bits (2494), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/915 (40%), Positives = 540/915 (59%), Gaps = 52/915 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  F+ +F +NGH  + SSSL+P NDPTL+FTN+GM  FK++F G +K  Y+   
Sbjct: 6   SSADIRQAFINYFAENGHTPVASSSLVPHNDPTLLFTNAGMNQFKDVFLGIDKRDYKRAV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI   W+ LT  K   L
Sbjct: 66  SSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQQAIPFCWEFLTSDKWLGL 125

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +LY+TVY  D+EAF +W  + GL A++IIRI  N       DNFW+M +TGPCGPC+
Sbjct: 126 PKDKLYVTVYHTDDEAFDIWHNVVGLPAERIIRIGDNKGGQYQSDNFWAMGDTGPCGPCT 185

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           E+F+D GE I GGLPG   E+G+R++EIWN VFMQF +Q       LP  S+DTGMGLER
Sbjct: 186 EVFYDHGEHIWGGLPGTPEEDGDRFVEIWNNVFMQFNRQKDGTLEKLPAPSVDTGMGLER 245

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           ++ ++Q   +NY+ID+F HL+Q + QV G+  + +  +  + +V+ DH+RS SFLIADG+
Sbjct: 246 ISAIMQGVHSNYEIDIFTHLMQHAAQVIGLPNDIDLQSEPSLKVLADHIRSVSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L + +  IE+ 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGNKLGATDNFFYKLVAPLAQIMGDAYPQLREQQANIEQA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +  E+E+F KTL +GL LL   L  L   + L+G   FKLYDT+G P D+  DI+  R +
Sbjct: 366 ILKEEEQFAKTLSQGLKLLSQELDSLKSGDTLSGATVFKLYDTYGFPADLTADIVRERDI 425

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + ID   F Q + +QR+RAR        G     +  L +   AT+F+GYD    S    
Sbjct: 426 S-IDEAGFEQGMAQQRARAREA------GKFGVDYNQLIQVDSATEFLGYDKAEHS---- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  +  +G+  E+   G +  +V   TPFYAE GGQ G+
Sbjct: 475 -------------------STITHLYLEGKSAEQLQEGDEGVIVLSATPFYAEGGGQAGE 515

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +    ++ D +K  + I  HH +V+ G +R   S    +  Q R   + NHSAT
Sbjct: 516 LGDIQTETGVFEVQDTKKSGQAII-HHGVVKMGSIRQGQSSEARVASQVRAMSAKNHSAT 574

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL   LG+ V+Q GS +  + LRFD ++ K +T  ++ +IE+ VN  I  N P  
Sbjct: 575 HLLHAALREHLGTGVTQKGSLVNSEVLRFDFSYDKALTEQDIITIENIVNQQILANQPAT 634

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLL 708
             +++   A   GA AL G KY D VRV+S+    +DG   S  LCGG HV  TG+I L 
Sbjct: 635 VEMLSMTQAQDKGAMALFGEKYGDTVRVLSMGTVDKDGKPFSIELCGGLHVQRTGDIGLF 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE  I AGIRRIEA+TG  A  ++   +++L  LAS LK  +  +  RV ++ ++ R
Sbjct: 695 KIVSEQGIAAGIRRIEAVTGMGAVKYVQQGEKQLNQLASQLKAKRDEIADRVNQMTDKTR 754

Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSG 823
            L  QL   ++KL  +      + + D+N    +I+    +D K L+++ D ++ K+  G
Sbjct: 755 DLEKQLERLQQKLASSQAKDLINNVQDINGQKVLIASLPGMDGKALRTIADDMKSKLHDG 814

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I++L G++ + K ++   V +DL  +  A D+ +  ++ L GG GGG+P  AQ G  +  
Sbjct: 815 IVVLAGVA-DDKIALTASVGKDLTSKIKAGDIIKHLSEQL-GGKGGGKPDFAQGGATDVA 872

Query: 884 KADQAIAGVASFLKK 898
                +  + ++L +
Sbjct: 873 GLPTVLDALPNWLAE 887


>gi|85058516|ref|YP_454218.1| alanyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123520018|sp|Q2NVL2|SYA_SODGM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84779036|dbj|BAE73813.1| alanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 875

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/910 (42%), Positives = 548/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y+  
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDNRFYRRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTGEHWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W    G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYNIWASEVGIPAERIIRIGDNKGSAYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTLLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLFK LI A+ +         +  + RVI DH+RS  FL++DG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFKTLIAAAAEA--TGASDPDSKSLRVIADHIRSCVFLVSDGVV 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG ++     L+  L   MGSA  +L   + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAIRHGNMLGASDTFFYKLVAPLIDVMGSAASQLQPQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G  LD+  D+   R L 
Sbjct: 361 RAEEEQFARTLERGLTLLDDELAKLTGD-TLDGETAFRLYDTYGFSLDLTADVCRERNLR 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E QR RAR  S G G+      + SL      T+F GY+ L        
Sbjct: 420 -VDEAGFERAMEAQRKRARESS-GFGAD-----YNSLLRVDETTRFFGYEHLEH------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+ + G++V     G++  VV D+TPFY E+GGQ+GD 
Sbjct: 467 -----------------QGRVTALFRDGQLVGVIRQGEEAVVVLDETPFYGESGGQVGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D QK  +  F H   +  G L+    +   +D   R ++ +NHSATH
Sbjct: 510 GVLKAASGVFEVADTQKYGKA-FGHQGKLSYGELKLGAQVTAQVDSARRERIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +    LRFD +H++ +   +++ +E+ VN+ I  NLP+ T
Sbjct: 569 LLHAALRQVLGDHVGQKGSLVNDHYLRFDFSHNEAMKPEQIRRVEEIVNEQIRCNLPIQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  EDA   GA AL G KY  +VRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 DIMALEDARNKGAMALFGEKYEAQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEA+TG+ A + L  Q + ++ +A  +K     +V +V  + E  R+L+
Sbjct: 684 AESGTAAGIRRIEAVTGEEALASLHQQSDLVQHIAQLVKGDSQTLVDKVRALQERSRQLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++      +   I  V  +   +   + K L++++D L+ ++ S +I+
Sbjct: 744 KDLQQLKNQQAAQESASLGRNVRDINGVKVLVRQLDSAEPKMLRTMVDDLKNQLGSAVII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++ E K S++  VT+DL DR  A D+    A+ + GG GGGRP +AQ+GG +     
Sbjct: 804 LATVA-EGKVSLIAGVTKDLTDRVKAGDIVGHLAQQV-GGKGGGRPDLAQAGGSDIAALP 861

Query: 887 QAIAGVASFL 896
            A+A V + L
Sbjct: 862 AALASVDAML 871


>gi|83747684|ref|ZP_00944719.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725594|gb|EAP72737.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 880

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/917 (41%), Positives = 536/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 419 ENDVI-VDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLV-- 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 470 --------------------RETARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 510 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 570 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 630 AATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 684 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 743

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 744 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S E K +++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 804 TAAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 861

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 862 PDKLPQALAGVTAWVQQ 878


>gi|110834659|ref|YP_693518.1| alanyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110647770|emb|CAL17246.1| (alanyl-tRNA synthetase) [Alcanivorax borkumensis SK2]
          Length = 900

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/904 (42%), Positives = 538/904 (59%), Gaps = 47/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F   GH  + SSSL+P NDPTL+FTN+GM  FK++F G+E   Y  
Sbjct: 38  MKS-AELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTR 96

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L
Sbjct: 97  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGL 156

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 157 PEERLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 215

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS++E  +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ 
Sbjct: 216 ADVPGGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQG 275

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ L+QA+ + TG         + RVI DH+RS+SFLI DG++P+NEGRGY
Sbjct: 276 VHSNYEIDLFQALLQAAAKATGCTDLEEK--SLRVIADHIRSASFLICDGVIPSNEGRGY 333

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+ AL  EMG AYPEL + +  IE+ L +E+E+FG
Sbjct: 334 VLRRIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFG 393

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  G+ +L+  +  L    +L GDV F LYDTHG P D+  D+   R L+ +D+  F 
Sbjct: 394 RTLAAGMKVLESAIEQL-DGRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFE 451

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR RAR      G+G+    +         T F GY+ L                
Sbjct: 452 AAMAAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKLADDN------------ 493

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+ + G  V+   +G++  VV D+TPFYAE+GGQ+GDTG  I D  
Sbjct: 494 -----------TVVALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEA 542

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD +K+ +   VH      G L     +   +D   R  +  NHSATHL+H AL  
Sbjct: 543 RFMVTDTRKR-QAAHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRN 601

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS ++ D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ E A
Sbjct: 602 VLGEHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESA 661

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL G KY+D+VRV+S+  +     S  LCGGTHV+ TG+I L  I  E+S  AG
Sbjct: 662 REAGAMALFGEKYDDQVRVLSMGSDG---FSKELCGGTHVNRTGDIGLFRITLEASAAAG 718

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L+    + K 
Sbjct: 719 VRRIEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQ 778

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L              I  V  ++  I   D K L+  MD L+ K+ S +I+L  +  E 
Sbjct: 779 KLASGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGE- 837

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K +++  VT+DL  ++ A DL +  A+ +  G GGGRP MAQ GG N      A+  V +
Sbjct: 838 KVALVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKA 896

Query: 895 FLKK 898
           ++ +
Sbjct: 897 WVAE 900


>gi|113969471|ref|YP_733264.1| alanyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|123130634|sp|Q0HL60|SYA_SHESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113884155|gb|ABI38207.1| alanyl-tRNA synthetase [Shewanella sp. MR-4]
          Length = 874

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/909 (41%), Positives = 553/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK--SLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L + + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNEL-QGDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G+        
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTGN-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 466 ---------------AKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   ++D QK  +    H   +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 VAQGIEFAVSDTQKFGQAS-GHKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLACDAVVVNGVNVLIKKLDGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|91774923|ref|YP_544679.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT]
 gi|122400203|sp|Q1H3U9|SYA_METFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91708910|gb|ABE48838.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT]
          Length = 874

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 542/913 (59%), Gaps = 57/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL++F   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-NQIRQAFLDYFASKGHQIVSSSSLVPAGDPTLLFTNAGMNQFKDVFLGFDKRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L
Sbjct: 60  ATSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTQVFKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L +TVY ED+EA+ +W +  G+ A+++IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PADKLTVTVYAEDDEAYDIWTREIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE IPGG PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER
Sbjct: 180 EIFYDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF++LI+A+ +VT       +  + +V+ DH+R+ SFLIADG++P
Sbjct: 240 IAAVLQGVHSNYEIDLFQNLIKAAARVTNTTDL--DSPSLKVLADHIRACSFLIADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG  +     ++ AL  EMG AYPEL   +  I   LR
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGARQAFFHLMVSALVNEMGDAYPELKSGEERITSILR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF +T++ G+ +L+  L  + K  + + NG+ AFKL+DT G PLD+  D+   RG+
Sbjct: 358 QEEDRFFETIEHGMAILEAELEEMAKTGNHVFNGETAFKLHDTFGFPLDLTADVCRERGV 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D  +F+ A+  Q+ +ARA           K+  +L+    AT F GYD L       
Sbjct: 418 S-VDSAAFDAAMARQKEQARAAGK-------FKMAANLEYTGNATTFHGYDTLE------ 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ + G  V     G+   VV D TPFYAE+GGQ+GD
Sbjct: 464 -----------------AQGKVLALYKDGSAVPALNEGELGVVVLDNTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G     Q+ D QK    +F HH ++  G LR    +   +D  +R +   +HSAT
Sbjct: 507 QGILKGAEGIFQVEDTQKIQASVFGHHGVLSTGTLRVGDEVSARVDLLSRHRTMRHHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LGSHV Q GS + PD  RFD +H+ P+T+ E++ IED VN  I  N P +
Sbjct: 567 HLMHKALRAVLGSHVQQKGSLVDPDKTRFDFSHNAPVTADEIRRIEDIVNAEILANTPTL 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R+M  ++A  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I
Sbjct: 627 ARVMPIDEAQKTGAMMLFGEKYGDEVRVLDIG------TSRELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES + AG+RRIEA  G  A  H+  Q + L   A+  KV    + G++ +  E+ + L
Sbjct: 681 VSESGVAAGVRRIEAAAGDVALRHIQQQQQLLADAAASFKVPAIELAGKISQTLEQIKAL 740

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L              I  +  ++  +   D+  L+  MD L+ K+++  I
Sbjct: 741 EKELARLKSKLASSQGDELASQAVNIGGIKVLAATLEGADANTLRETMDKLKDKLKTAAI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  ++ + K SV   VT D   R  A +L    A  + GG GGG+P MA +GG + ++ 
Sbjct: 801 VLASVNGD-KVSVAAGVTTDTTARIKAGELVNFVAAQV-GGKGGGKPDMAMAGGSDPSQL 858

Query: 886 DQAIAGVASFLKK 898
            +A+A VA ++++
Sbjct: 859 PRALASVAGWVEE 871


>gi|163852018|ref|YP_001640061.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|205830139|sp|A9W5Y4|SYA_METEP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163663623|gb|ABY30990.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 891

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/896 (49%), Positives = 586/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 463 ------EAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL  R++AV+L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTGRYDAVELVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|261210116|ref|ZP_05924414.1| alanyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260840881|gb|EEX67423.1| alanyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 860

 Score =  964 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/912 (42%), Positives = 543/912 (59%), Gaps = 69/912 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+ +  G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAAEAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F +A+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEKAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K    I  HH I+ +G+L     +   +D Q R  +S+NHSATH
Sbjct: 509 GVLKTEAGIFHVEDTHKLGNAI-AHHGILAQGVLAKGDQVEAIVDEQRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 HIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  ++  Q              Q     +V E+  + + L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYIEAQ--------------QAQHDAKVVEMAAKAKLLE 728

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L  ++         +IA VN +   ++  D+K L+ ++D L+ ++ SGIIM
Sbjct: 729 KEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIM 788

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L G   + K  ++  VT DL  +  A +L  + A  + GG GGGRP MAQ+GG + +   
Sbjct: 789 L-GNVADGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALP 846

Query: 887 QAIAGVASFLKK 898
            A+  V +++ +
Sbjct: 847 SALESVDAWIAE 858


>gi|117919577|ref|YP_868769.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|205830207|sp|A0KU94|SYA_SHESA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117611909|gb|ABK47363.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 874

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/909 (41%), Positives = 553/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK--SLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L + + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNEL-QGDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G+        
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTGN-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 466 ---------------AKVTALYLNGESVSAISAGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   ++D QK  +    H   +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 VAQGIEFAVSDTQKFGQAS-GHKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|212634216|ref|YP_002310741.1| alanyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|212555700|gb|ACJ28154.1| Alanyl-tRNA synthetase [Shewanella piezotolerans WP3]
          Length = 874

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/907 (42%), Positives = 553/907 (60%), Gaps = 54/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G++K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LTKE  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNFLTKELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y+ D EA+ +W K  G++ + IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYETDNEAYDIWSKKVGVAPENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PG   E+G+R+IEIWN+VFMQ+ +Q+      LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGAMNPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ + ++ G+    N   + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTDLENK--SLRVISDHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T      L+P L   MG A   L+  + ++E++L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L K ++L+G+ AFKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDNALSGL-KGDVLDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G  E  +    +    + F+GY  L           
Sbjct: 420 EAGFKTAMAEQRSRAQAA------GQFETDYNEGLKIDEQSGFVGYQELNN--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI + GE V+    G +  +V + TPFY E+GGQ GD G  
Sbjct: 465 --------------QATVTAIYKAGEPVDALNVGDEAVIVLNNTPFYGESGGQCGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + DGI  Q+ D QK  + I  H   +  G +    S+   +D + R +  +NHS THLLH
Sbjct: 511 LADGIEYQVADTQKYGQAI-GHIGKLAEGSIVVGQSIATNVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + + ++ELK +E+ VN  I +N  +   +M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKASELKEVEELVNTQIRRNHELKAEVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIEQAKEKGAMALFGEKYDAEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q   L+  A+ LK    +V+ +++   ++ + L+   
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQASLEEAAALLKGDSASVITKLKAQLDKSKALEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L             ++  +  +   +  VD+  L+ + D L++K++SGI++L G
Sbjct: 745 AQLKDKLAAATSADLAGEAVEVNGIKVLVKQLEGVDAGSLRGLQDELKQKLKSGIVVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I+ + K +++  VT+DL  +  A +L    A  + GG GGGRP MAQ+GG        A+
Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLKGAL 862

Query: 890 AGVASFL 896
             V  ++
Sbjct: 863 DSVIPWI 869


>gi|148262305|ref|YP_001229011.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|205830100|sp|A5GD98|SYA_GEOUR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146395805|gb|ABQ24438.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4]
          Length = 876

 Score =  964 bits (2492), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/906 (42%), Positives = 548/906 (60%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F +FF++ GH ++ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIRAQFFKFFEERGHTVVESSNLIPRNDPTLLFTNAGMNQFKDVFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWNRQEGVPLERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF +  +     LPK S+DTGMGLER++TV+Q 
Sbjct: 181 GTGCGSPTCEVGCDCDRYMEIWNNVFMQFNRDAQGNLTPLPKPSVDTGMGLERISTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+++G +Y  +  + V+ RVI DH R+ +FLI DGILP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIKHVEKLSGKRYRQDERDDVSMRVIADHSRAITFLICDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP +  ++ A+ T MG AYPEL++ +  I++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPALYRIVDAVNTMMGDAYPELLEREEYIKKVIHAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L K+   ++ G+V FKLYDT+G P+D+  DI+   G   ID 
Sbjct: 361 FIETLDRGLAILNEEVAALKKEGKSVVPGEVIFKLYDTYGFPVDLTADIVENEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR +AR +  G G     +I+ +L  +   + F+GY               
Sbjct: 420 DGFALCMERQRLQARENWKGSGEEGLAEIYKTLHGRGIRSAFVGYSE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+++G  V EAV+G+ VEVV D TPFY  +GGQ GDTG   
Sbjct: 467 ----------QTAYSAITAILREGAEVAEAVAGEMVEVVVDTTPFYGASGGQAGDTGVIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                L++    K    + VH A+V  G ++   +  L +  + R   + NH+ATHLL  
Sbjct: 517 TGSAHLRVVATSKPFPDLTVHRALVTEGTVKAGDAADLRVATEVRGATARNHTATHLLQS 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +T + LRFD TH   +T  EL+ +E+ VN  +  N  V +  M 
Sbjct: 577 ALRQVLGEHVKQAGSLVTAERLRFDFTHFSAMTVEELRRVENIVNTYVMDNADVKSLEMA 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+ SGA AL G KY DRVRVV V     G  SS LCGGTHV + G+I    IV E+ 
Sbjct: 637 ATEAMQSGATALFGEKYGDRVRVVKV-----GEVSSELCGGTHVRAAGDIGFFKIVGEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  ++   +++ +S+A  +K   G  + +V+ +    ++LQ    
Sbjct: 692 IAAGVRRIEALTGSGALEYVQQLEDEQRSIAVLVKAEGGTALDKVDRLLARQKELQREVE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            +   +  ++  +   D K L+ + D+L+ ++QSG+I++  +
Sbjct: 752 ALQARLNASRSADLLAGARETNGIKVLAAKVEMDDPKGLRELADSLKDRLQSGVIVIGCV 811

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   KA++L+ VT+DL DR  A D+ +  A ++ GG GGG+P +AQ+GG      D+A+ 
Sbjct: 812 SA-GKANLLVAVTKDLSDRLRAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEALE 869

Query: 891 GVASFL 896
                +
Sbjct: 870 AAYKII 875


>gi|237748703|ref|ZP_04579183.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229380065|gb|EEO30156.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/911 (43%), Positives = 546/911 (59%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF+  GH ++ SSSL+P NDPTLM TN+GMV FK++F G +K  Y  
Sbjct: 8   MKS-AEIRQKFLSFFEAKGHTIVRSSSLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L
Sbjct: 67  ATSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKL 126

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L+ TVY ED+EA+ +W    GL  ++I+RI  N       DNFW MA+TGPCGPCS
Sbjct: 127 PADKLWATVYYEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCS 186

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LP   +DTGMGLER
Sbjct: 187 EIFYDHGPDVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLER 246

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ   +NY+IDLF++LI+A+ + TG     NN  + +VI DH+R++SF+I DG++P
Sbjct: 247 LAAVLQHVHSNYEIDLFQNLIKAAARETGTTDLTNN--SLKVIADHIRATSFMIVDGLIP 304

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            ++G GYVLRRI+RRA+ +   LG T+P    L+  L  EMG+AYPEL++A   ++  LR
Sbjct: 305 GSDGHGYVLRRIIRRALRHGYKLGQTKPFFYKLVEDLVKEMGAAYPELVEAAGYVQRVLR 364

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TLD G+ +L+  L+      +LNG+ AF LYDT+G PLD+  DI   R +  
Sbjct: 365 HEEERFGETLDNGMKILESALTD--SSTVLNGETAFTLYDTYGFPLDLTADICRERNMT- 421

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+E+QR+ ARA           K+  +L+     TQF+GY+ L         
Sbjct: 422 VDEAGFDVAMEKQRATARASGK-------FKMAAALEYHGEKTQFVGYERLE-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V AI + G  V++  +GQ   +V D TPFYAE+GGQ+GD G
Sbjct: 467 ---------------EVGTVVAIYRDGTPVDKIETGQNGVIVLDTTPFYAESGGQVGDVG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+G+R  + D QK    +  HH  +  G +     L   ++ + R Q   NHS THL
Sbjct: 512 TLVGNGVRFDVEDTQKIQADVAGHHGKLVNGTITIGDKLDGRVNMEMRAQTMRNHSVTHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LGSHV+Q GS + P+  RFD +H+ PIT  E++ +E+ VN  I  N P  T 
Sbjct: 572 MHKALRQVLGSHVAQRGSLVDPEKTRFDFSHNAPITDDEIRQVEEIVNREIVANNPTETH 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++AIA GA AL G KY D VRV+ +        S  LCGGTHVS TG+I    +VS
Sbjct: 632 QMSFDEAIAHGATALFGEKYGDVVRVLDIG------FSCELCGGTHVSRTGDIGFFKVVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E  + AGIRRIEA+TG  A   +     K+   AS LK     +V R+ ++ +  + L  
Sbjct: 686 EGGVAAGIRRIEAVTGLVAMQWVQDMARKVGEAASALKTQPDELVNRIVQVQDHIKGLDR 745

Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           +L   K K   +  D    K   I  V  ++ +I   D   L+S MD L+ K+++  I+L
Sbjct: 746 ELSTLKAKFASSQGDDLADKATDIKGVKVLAAMIEGADVSGLRSTMDKLKDKLKTAAIVL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K S++  VT D+  +  A +L    AK + GG GGGRP MA +GG + +  D 
Sbjct: 806 AAV-NDGKVSLIAGVTSDMTSKLKASELVNHVAKQV-GGKGGGRPDMAAAGGTDPSGLDG 863

Query: 888 AIAGVASFLKK 898
           A+  V  ++++
Sbjct: 864 ALNSVGGWVQE 874


>gi|126462865|ref|YP_001043979.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|205830188|sp|A3PLJ1|SYA_RHOS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126104529|gb|ABN77207.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 883

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/874 (49%), Positives = 566/874 (64%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDHEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL +   L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G        GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 463 ------EQAEGQVLALVAAGAETASVGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALTYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ + +  +         +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|91227829|ref|ZP_01262002.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91188339|gb|EAS74635.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 860

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/906 (42%), Positives = 541/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKGS------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q+ K +               + + + +E +KL+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-------KLAESAQKAKALEKEVQKLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A  +    +      ++     +   +   DSK L++++D ++ ++ SG+++L  ++ 
Sbjct: 737 KMAAAESANIMGK--AVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANVTG 794

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +AI  V
Sbjct: 795 D-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPEAIKTV 852

Query: 893 ASFLKK 898
             +L++
Sbjct: 853 QPWLEE 858


>gi|221639882|ref|YP_002526144.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|221160663|gb|ACM01643.1| Alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 883

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/874 (49%), Positives = 567/874 (64%), Gaps = 37/874 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA ++WKK++GL  ++IIRI TNDNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL + + LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGTQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+  L HL     L G+ AFKLYDT+G PLD+ QD L  +G   +D+  F 
Sbjct: 361 QTLERGLRLLEDELGHLPDGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF L E +GAT+F+GYD                  
Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G     A  GQ V+++ +QTPFYAE+GGQ+GDTG    D  
Sbjct: 463 ------EQAEGQVLALVAAGAETASAGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R +ITDV KK +G+F+H A V  G +R      L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRAAIRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +HS+ ++  EL ++E  VN  I  N  V TRIM+ +DA
Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHVS  G+I L  I+ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGADGQTYSLELCGGTHVSRLGDIGLCVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TG+ A ++L  Q ++L  +A+ LK +   +V RV+ + EE R+LQ 
Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755

Query: 773 IHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             A+ + +  +         +I  V F++ ++  V  K++  ++D ++ ++ SG ++L+ 
Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                KA++   VT DL DR +AV L + +A+ L
Sbjct: 816 -DTGGKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848


>gi|21231177|ref|NP_637094.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|24418692|sp|Q8P9X0|SYA_XANCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21112818|gb|AAM41018.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 882

 Score =  964 bits (2491), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 541/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF+LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVALPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     EI+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDDVAS--RSQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVATMAPTVFLGYEAQDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  V+ A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + +++ D QK A     H   +  G L+    L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHVS TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   +V +V  + +  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AA-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 QGVPSWVKQ 879


>gi|205830247|sp|A1S4E9|SYA_SHEAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 873

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 558/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT    L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L +TVY  D+EAF +W K  G+ A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN+VFMQ+ +Q+      LPK ++DTGMG+ER++
Sbjct: 184 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSDLENK--SLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG T+     L+P L   MG A  EL   + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R L  +D
Sbjct: 362 EEQFARTLERGLGMLDAALADL-KGDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+ EQRSRA+A       G     + +  +   AT F GY  L           
Sbjct: 420 EEGFNAAMAEQRSRAQAA------GQFSADYNAALKIDTATDFCGYTELA---------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S V A+ + GE V+ A +G  + VV D TPFYAE+GGQ+GD G  
Sbjct: 464 -------------AESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +GI  H   +  G ++   SL   +D + R +  +NHS THLLH
Sbjct: 511 LAEGVEFNVADTQKFGQGI-GHKGQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK++ED VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E+A A GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ R+L+  +
Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 744

Query: 775 AKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +              +I  V  +   +  V++  L+ + D L++K++SG+++L  
Sbjct: 745 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLA- 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I    K +++  VT+DL  +  A +L  + A  + GG GGGRP MAQ+GG    K D A+
Sbjct: 804 IGSGDKVNLIAGVTQDLTGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSEPAKLDGAL 862

Query: 890 AGVASFLKK 898
           A V  +L +
Sbjct: 863 ASVVPWLNE 871


>gi|170717275|ref|YP_001784390.1| alanyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|205830062|sp|B0UTE1|SYA_HAES2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168825404|gb|ACA30775.1| alanyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 874

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 545/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +   Y  
Sbjct: 1   MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY+ D+EA+ +W K  G+  + IIRI  N       DNFW+M +TGPCGP
Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D GE + GGLPGS  E+G+RYIE+WN+VFMQF +        LPK S+DTGMGL
Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NYDID+F+ LI    ++TG K   N   + RVI DH+RS ++LI DG+
Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKDLTNK--SLRVIADHIRSCAYLIVDGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRRI+RRA+ +  LLG  +     L+P L   M +A  ++   +  +E+ 
Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           LR E+E+F +TL+RGL LLD  L ++ KD +L+G+VAFKLYDT+G PLD+  D+   R +
Sbjct: 359 LRLEEEQFARTLERGLALLDEALINV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RA+A S           + ++    G T F GY          
Sbjct: 418 R-IDEEGFEREMEVQRLRAQAASR------FGVDYNNVIRVEGTTTFEGYTEAET----- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+  +G+ VE   +GQ   V+ D TPFYAE+GGQ+GD
Sbjct: 466 ------------------QAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            GC I   +R  + D QK  + +F H   + +G L    ++   +D ++R + S+NHSAT
Sbjct: 508 RGCLIATNMRFDVKDTQKYGQ-VFGHIGTLIQGTLNVGQTINAVVDTEHRIKTSLNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LGSHV+Q GS ++   LRFD    + I+  +L  IE  VN  I  N  VV
Sbjct: 567 HLLHAALRQVLGSHVAQKGSLVSDTILRFDFAQPEAISQEQLFEIECLVNQHIRANHLVV 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  ++A A GA AL G KY D VRVV +     G  S  LCGG HV  TGEI L  I
Sbjct: 627 TEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VS S+I AG+RR+EA+TG+ A + L  Q   L   A  LK    ++V +++++ ++ +K 
Sbjct: 682 VSGSAIAAGVRRVEAVTGEGAINWLQQQQVLLMQSADLLKSDANSLVEKIQQLQDKAKKT 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K +  ++       S  +I  V+ +   +  +D K L+ ++D L+ ++ S +I
Sbjct: 742 EKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             V    E K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG      
Sbjct: 802 AFV-TKNEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENI 859

Query: 886 DQAIAGVASFLKK 898
            +A+     +L K
Sbjct: 860 SKALTVCNEWLHK 872


>gi|240139285|ref|YP_002963760.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240009257|gb|ACS40483.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 891

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/896 (50%), Positives = 585/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 463 ------EAAEAVVGALLRDGSEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T   KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTDKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|163741065|ref|ZP_02148457.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385418|gb|EDQ09795.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 883

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/893 (48%), Positives = 576/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A++  G  V EA  G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 462 ------EAAEGQIMALLVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL+ +  +VN  I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSAEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+        +DG  +S  LCGGTHV  TG+I    I+S+
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEIANSLKAQPEEVMDRLKALMDERKALQNE 754

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +   +       ++    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|17545516|ref|NP_518918.1| alanyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|20532248|sp|Q8Y193|SYA_RALSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17427809|emb|CAD14499.1| probable alanyl-trna synthetase (alanine--trna ligase) (alars)
           protein [Ralstonia solanacearum GMI1000]
          Length = 884

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/921 (41%), Positives = 537/921 (58%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ L+ A+ + T  K   NN  + RVI DH+R+ +FLI D
Sbjct: 241 GMERLAAILQHVHSNYEIDLFQALVSAAARETNTKDLANN--SLRVIADHIRACAFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + 
Sbjct: 299 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVKEMGEAYPELREARDRVV 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG------KDEILNGDVAFKLYDTHGLPLDIMQ 402
           + LR+E+ RF +T++ G+ +LDG L  L       K  +L+G++AFKL+DT+G PLD+ Q
Sbjct: 359 DVLRTEEARFFETIEHGMSILDGALGELKAAGKDEKQRMLDGELAFKLHDTYGFPLDLTQ 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           D+     +  +D  +F+ A+  QR +ARA      +  T      L      T F GYD 
Sbjct: 419 DVCRENDVI-VDEAAFDAAMNRQREQARAAGKFKMAAGT------LDYTGDKTTFHGYDQ 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                         +S V A+   G  V E   GQ   VV D TPFYA
Sbjct: 472 L----------------------LSETSRVTALFVDGASVPEMRPGQTGVVVLDHTPFYA 509

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+GD G      +   + D QK    +F H   +  G+L+   ++   +D   R +
Sbjct: 510 ESGGQVGDQGTLKAATVWFDVADTQKVLPEVFGHQGTLRTGVLKVGDAVGAEVDAVRRAR 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  
Sbjct: 570 TMRNHSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNTPMTPLQIREVEARVNAE 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I  N     ++M  +DA+ SGA AL G KY D VRV+++        S  LCGGTHV+ T
Sbjct: 630 ILANASTNAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIGS------SKELCGGTHVART 683

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ +
Sbjct: 684 GDIGLFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRIGEAAAALRAQPSELTQRIVQ 743

Query: 763 IWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + ++ + L+    + K +L              +A +  ++  +   D+K L+  MD L+
Sbjct: 744 VQDQVKSLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLK 803

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            K+++  I+L  +S + K +++  VT D   R  A +L    A+ + GG GGGRP MAQ+
Sbjct: 804 DKLKTAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQA 861

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG   +K  QA+AGV +++++
Sbjct: 862 GGTEPDKLPQALAGVTAWVQQ 882


>gi|254427911|ref|ZP_05041618.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196194080|gb|EDX89039.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 866

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/905 (42%), Positives = 539/905 (59%), Gaps = 50/905 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F   GH  +PSSSL+P NDPTL+FTN+GM  FK++F G+E   Y  
Sbjct: 1   MKS-AELRQAFLDYFASQGHTKVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGRESRDYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 120 PEDRLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 178

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS  E  +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ 
Sbjct: 179 AHVPGGPPGSEGEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ L+QA+ + TG +       + RVI DH+RS+SFLI DG++P+NEGRGY
Sbjct: 239 VHSNYEIDLFQALLQAASKATGCQDLEEK--SLRVIADHIRSASFLICDGVIPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    ++ AL  +MG AYPEL + +  IE+ L +E+E+FG
Sbjct: 297 VLRRIIRRALRHGHKLGQDKPFFSTMVSALVEQMGEAYPELGREQARIEKALLAEEEQFG 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  G+ +L+  +  L   ++L G+V F LYDTHG P D+  D+   R L  +D+  F 
Sbjct: 357 RTLAAGMKVLESAIEQL-DGKVLPGEVLFNLYDTHGFPPDLTADVARERALT-VDMDGFE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR RAR      G+G+    +         T F GY+ L                
Sbjct: 415 TAMAAQRERAR------GAGSFANDYSDRLNIDAVTDFSGYEKLADDDA----------- 457

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                       V A+ + G+ VE   +G++  VV  +TPFYAE+GGQ+GDTG  +G   
Sbjct: 458 ------------VVALYKDGDAVETLNAGEEGMVVLARTPFYAESGGQVGDTGALMGGDD 505

Query: 539 --IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              R  +TD +K+ +   VH   +E G L     +   +D   RR +  NHSATHL+H A
Sbjct: 506 SETRFLVTDTRKR-QAAHVHVGKLESGTLTVGSKVSAYVDVDRRRAVMRNHSATHLMHAA 564

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +  D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ 
Sbjct: 565 LRDVLGEHVQQKGSLVAADYLRFDFSHGEAVSEAQREQIEILVNRQILANTAVTTELMDI 624

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A  +GA AL G KY+D+VRV+S+  +     S  LCGGTHV+ TG+I L  I  E+S 
Sbjct: 625 DAAREAGAMALFGEKYDDQVRVLSMGSDG---FSKELCGGTHVNRTGDIGLFRITLEASA 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L+    +
Sbjct: 682 AAGVRRIEAVTGEHALAVMRQQERALSEIAATVKSSPDNAADRVRSQAQKVRELEKEIER 741

Query: 777 RKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L              +  V  ++  I   DSK L+  MD L+ K+ S +I+L  + 
Sbjct: 742 LKQKLASGAGGDLTSEVQDVNGVKVLATQIDGADSKTLRVTMDKLKDKLGSAVILLAAVE 801

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K +++  VT+DL  R+ A DL +  A+ +  G GGGRP MAQ GG N      A+  
Sbjct: 802 GD-KVALVAGVTKDLTARYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALES 859

Query: 892 VASFL 896
           V  ++
Sbjct: 860 VKGWV 864


>gi|114046704|ref|YP_737254.1| alanyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123030800|sp|Q0HXF8|SYA_SHESR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113888146|gb|ABI42197.1| alanyl-tRNA synthetase [Shewanella sp. MR-7]
          Length = 874

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/909 (41%), Positives = 553/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK--SLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L   ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L + + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNEL-QGDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G+        
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTGN-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 466 ---------------AKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   ++D QK  +    H   +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 VAQGIEFAVSDTQKFGQAS-GHKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKVQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S +I+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|269965244|ref|ZP_06179378.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269830230|gb|EEZ84457.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 860

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/906 (42%), Positives = 540/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTATKGS------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFHVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q+ K +               + + + +E +KL+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-------KLAESAQKAKALEKEVQKLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A  +    +      ++     +   +   DSK L++++D ++ ++ SG+++L  ++ 
Sbjct: 737 KMAAAESANIMGK--AVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANVTG 794

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +AI  V
Sbjct: 795 D-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPEAIKTV 852

Query: 893 ASFLKK 898
             +L++
Sbjct: 853 QPWLEE 858


>gi|254561741|ref|YP_003068836.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254269019|emb|CAX24980.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 891

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/896 (49%), Positives = 586/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEASTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 463 ------EAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|148260046|ref|YP_001234173.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|205829966|sp|A5FXC2|SYA_ACICJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146401727|gb|ABQ30254.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5]
          Length = 878

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/902 (48%), Positives = 593/902 (65%), Gaps = 30/902 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TVY ED+EA  LWK+I+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQF ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS +V+    +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EP +  L+PAL  +MG A+PEL +A+ LI ETL+ E+++F 
Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL+  +  LG  E L G VAFKLYDT+G PLD+ +D L  +   G+D   F 
Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQH-RGLDHEGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQ++RARA   G G   TE +W  L+++ G T+F+GY                   
Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYSTEESD------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+V  G     A +GQ+V ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 467 ----------ASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD QKKA  +FVH+  +E G +    S+   +D+  R  +  +HSATHLLH AL  
Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD++  +P+T AEL+++E  VN  I +N  V TR+M  ++A
Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +  GA AL G KY D VRVVS+   D G   +S  LCGGTHV+ TG+I    I++ES + 
Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGRSAYSIELCGGTHVARTGDIGAFRILAESGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           AGIRRIEA+TG+ A +    + + L+  A+ LKV+   +  R+  + EE +  + Q+   
Sbjct: 697 AGIRRIEAVTGEAALAATEAETDLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +RKL          ++A + F +  + EV  ++LKS+ D++ K + SGI  LV  + E K
Sbjct: 757 QRKLATGGAAAEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-ESK 815

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           AS+++ V+ DL    NAV L + ++ V+GG GGGGRP MAQ+GGP+ +KAD+A+A V + 
Sbjct: 816 ASIVVAVSPDLTSANNAVTLVQAASGVVGGKGGGGRPDMAQAGGPDASKADEALAAVRAL 875

Query: 896 LK 897
           +K
Sbjct: 876 IK 877


>gi|261854984|ref|YP_003262267.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261835453|gb|ACX95220.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 872

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 539/909 (59%), Gaps = 52/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +RT FLEFF + GHE++PSSSLIP +DPTL+FTN+GMV FK+ F G E      
Sbjct: 2   MKTTAELRTAFLEFFNQRGHEIVPSSSLIPAHDPTLLFTNAGMVQFKDAFLGLEHRANPR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+  WD LT+   L
Sbjct: 62  AVSCQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPEAIRYGWDFLTQVLKL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEI 175
              RL +TVY  D+EA+ +W+   GL  +K++RI        DNFW M +TGPCGPC+EI
Sbjct: 122 PADRLLVTVYQTDDEAYAIWRDEIGLPEEKVLRIGDKPSGGSDNFWQMGDTGPCGPCTEI 181

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  IPGG PGS  E+G+R+IEIWN+VFMQ+++    +   LPK S+DTGMG+ER+A
Sbjct: 182 FYDHGAHIPGGPPGSADEDGDRFIEIWNIVFMQYDRTVDGQLHPLPKPSVDTGMGIERLA 241

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NYDID+F+HLI A++ VTG         + +V+ DH+RS +FLI DG+ P N
Sbjct: 242 AILQGGHSNYDIDIFRHLITAAQAVTGAA--DQKSSSLKVLADHIRSCAFLIVDGVRPGN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGR YVLRRI+RRA  +   LG  EP    L+  L   MG AY EL  A+  +   LR E
Sbjct: 300 EGRDYVLRRIIRRAARHGHKLGVDEPFFYRLVAPLVEVMGPAYSELANAQAEVARVLRQE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +L+  L+ +     + G+V FKLYDTHG P D+  DI   RGL  +D
Sbjct: 360 EERFLQTLASGMQVLETELADMTPGGTIPGEVVFKLYDTHGFPFDLTADIARERGL-VLD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ E+R+++RA S              + E    T F GY              
Sbjct: 419 ESGFEHAMAERRAQSRAASQFAQQTH-------VLEIETPTCFEGY-------------- 457

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +     + AIV  GE ++   +GQ   +V D TPFYAE+GGQ+GDTG  
Sbjct: 458 ---------AQDKAQGALIAIVHDGEQIDVLEAGQSGALVLDHTPFYAESGGQVGDTGVI 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  +TD QK+    F+H   V  G +         ID + R  + +NHSATHLLH
Sbjct: 509 TTAGGRFVVTDTQKQGAN-FLHLGEVIEGRVALGDVADAQIDVERRHSIRLNHSATHLLH 567

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  + LRFD + S+PIT A+L+ IE  VN  I +N  V TR M
Sbjct: 568 AALRQVLGTHVHQKGSRVGAESLRFDFSQSEPITDAQLREIERIVNAQIRENHSVETREM 627

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A A+GA AL G KY D VRVV++     G  S  LCGGTH    G+I L+ IVSES
Sbjct: 628 PVDEARAAGAMALFGEKYGDVVRVVTM-----GPFSMELCGGTHARRGGDIGLIKIVSES 682

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TG  A + L   D+ L  +AS ++ S+ + V RV ++ E  R+L+   
Sbjct: 683 GVASGVRRIEAVTGASALAVLEQTDDALAEIASMVRGSRQDAVSRVSQVIERARQLEREL 742

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +   E       +   + DVN++   + + D   L+  +D L+ K+ +  +ML  
Sbjct: 743 AEIKAKQAAEAGGDLLTTAVAMGDVNYLVAELPDADVNTLRDTVDQLKNKLGTSAVMLAS 802

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + ++ K  ++  V++DL  R  A D   ++A+++ GG GGGRP MAQ+GGP+  +   A+
Sbjct: 803 V-EDGKVRLIAGVSKDLTGRIKAGDWVNVAAQIV-GGKGGGRPDMAQAGGPDSAQLPAAM 860

Query: 890 AGVASFLKK 898
               +++KK
Sbjct: 861 EAARAWMKK 869


>gi|149927912|ref|ZP_01916162.1| alanyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149823351|gb|EDM82584.1| alanyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 878

 Score =  962 bits (2488), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/916 (41%), Positives = 536/916 (58%), Gaps = 60/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR  FL+FF   GH  + SSSL+P NDPTL+FTNSGMV FK++FTG++K  Y   
Sbjct: 1   MKVADIREKFLDFFASKGHTKVASSSLVPGNDPTLLFTNSGMVQFKDVFTGKDKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+LLT  + L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIQYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RLY+TVY ED+EA+ +W K  G+ A++IIRI  N       DNFW MA+TGPCGPC+E
Sbjct: 121 PERLYVTVYQEDDEAYNIWNKQVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIE+WNLVFMQF++        LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEVWGGPPGSEQEDGDRYIEVWNLVFMQFDRTADGVLHPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV----NHRVIVDHLRSSSFLIADG 289
           A VLQ   +NY+IDLF+ LI+A+ +   +  +GN +     + RVI DH+R+ SFL+ DG
Sbjct: 241 AAVLQHVHSNYEIDLFQTLIKAAARE--VTAQGNAVELTNNSLRVIADHIRACSFLVVDG 298

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGRGYVLRRI+RRA+ +   LG  +P    L+  L +EMG AYPEL +A   ++ 
Sbjct: 299 VIPGNEGRGYVLRRIIRRAIRHGYKLGCRKPFFNALVGDLVSEMGEAYPELAKAAAQVQS 358

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L++E+ERF +T++ G+ +LD  L  L K  +L+G+ AFKL+DT+G PLD+  D+   R 
Sbjct: 359 ILKAEEERFFETIENGMAILDSALGALPKGGMLDGETAFKLHDTYGFPLDLTADVCRERE 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           ++ +D  +F++A+ +Q+ +ARA           K+   L      T+F GYD L  +   
Sbjct: 419 MS-VDEAAFDEAMNKQKQQARAAGK-------FKMDADLAYSGVVTEFKGYDALEVAN-- 468

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + + AI   G  V    +GQ+  VV DQTPFYAE+GGQ+G
Sbjct: 469 --------------------ATITAIYVNGTSVNSIAAGQQGVVVLDQTPFYAESGGQVG 508

Query: 530 DTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           D G            ++ D QK    +F HH  +  G L+   ++   +D   R +   N
Sbjct: 509 DQGEISNGSACLNLFRVLDTQKIQANVFGHHGELVTGELKVGDAVGAQVDQYQRNRTIRN 568

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HVSQ GS +  +  RFD  H   +T  ++  +E  VN+ I  N
Sbjct: 569 HSATHLMHKALREVLGDHVSQKGSLVDAEKTRFDFAHHSAMTPEQIAQVERIVNEEILAN 628

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                RIM+ E A ++GA  L G KY D VRV+ +        S  LCGGTHV  TG+I 
Sbjct: 629 AETQARIMDIESAKSAGAMMLFGEKYGDTVRVLDIGS------SRELCGGTHVQRTGDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  I SES + AGIRR+EA TG  A         +++++A  L+V       ++ +I ++
Sbjct: 683 LFKITSESGVAAGIRRVEATTGLGAMEFAQKAQAQVEAIAQSLRVPATEATAKIGQIMDQ 742

Query: 767 YRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              I  V  ++  +   D K+L+   D L+ K+ 
Sbjct: 743 VKNLEKELDRLKSKLAASQGDDLAGQAVDIDGVKVLAAKLEGADVKQLREAADKLRDKLG 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  ++L  +  E K S++  V++D   +  A DL    A+ + GG GGGRP MAQ+GG  
Sbjct: 803 NAALVLATV-LEGKVSLIASVSKDATAKVKAGDLVNFVAQQV-GGKGGGRPDMAQAGGTQ 860

Query: 882 GNKADQAIAGVASFLK 897
               D A+A V  ++K
Sbjct: 861 PENLDAALASVVDWVK 876


>gi|149190613|ref|ZP_01868882.1| alanyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835611|gb|EDL52579.1| alanyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 861

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/910 (42%), Positives = 540/910 (59%), Gaps = 66/910 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHDDPTLLFTNAGMNQFKDCFLGLEKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHVDGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  Y+  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVIG--YQDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L + MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGTLASVMGSAGEELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L   L +LG +++L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMTILTEALDNLGDEKVLDGETVFKLYDTYGFPADLTNDVAREREFT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    GS      
Sbjct: 420 IDEEGFEKAMEAQRQRAREA------GQFGTDYNAAIKVDTDTEFCGYTGTEGS------ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  V+   +G K  VV +QTPFYAE+GGQ GD G
Sbjct: 468 -----------------SSVAAMFVEGAEVDALSAGDKAIVVLEQTPFYAESGGQCGDAG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK    I  HH  +  G+L     +   +D Q R  +S+NHSATHL
Sbjct: 511 VLKTAAGLFKVEDTQKLGNAI-AHHGELVEGVLAKGDEVDAIVDAQRRAAISLNHSATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD +H + +T AE+K +E  VN  I  N  + T 
Sbjct: 570 LHAALRQVLGEHVTQKGSLVKPDNLRFDFSHLEAMTKAEIKEVERLVNAQIRTNHVIETN 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A A GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 630 VMDIESAKAKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           E  I AGIRRIEA+TG+ A   +  Q    +EKL   AS  K  +      ++++ ++  
Sbjct: 685 EGGIAAGIRRIEAVTGEAALDAIEAQASQYEEKLTDAASKAKSLEKE----IQQLKDKLA 740

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++  +   K           +IA    +   +   DSK L+++MD  + ++ SG I  +
Sbjct: 741 AVESANIMGK---------VEEIAGTQVLVAALEGADSKNLRTMMDNAKNQMGSG-IAFI 790

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K  ++  VT+DL  +  A DL ++ A+ + GG GGGRP MAQ+GG +     +A
Sbjct: 791 ANVADGKIGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVEALPEA 849

Query: 889 IAGVASFLKK 898
           +  + S+L++
Sbjct: 850 LKSIRSWLEE 859


>gi|88798293|ref|ZP_01113879.1| Alanyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88779069|gb|EAR10258.1| Alanyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 868

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/903 (41%), Positives = 543/903 (60%), Gaps = 45/903 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FLEFF+K+ H ++P+ SL+P +DPTL+FTN+GM  FK++F G ++  Y   
Sbjct: 1   MKTSEIRRRFLEFFEKHEHRVVPAGSLVPGDDPTLLFTNAGMNQFKDVFLGTDRRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+E  L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TVY +D+EA  +W    G+  +++ R+   DNFW M +TGPCGPCSEIF+D GE
Sbjct: 121 KEKLWVTVYQDDDEAADIWINDIGVDPNRLSRLGDKDNFWMMGDTGPCGPCSEIFYDHGE 180

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQF+      R  LPK S+DTGMGLER+A +LQ  
Sbjct: 181 EVPGGPPGSPDDDLDRYIEIWNLVFMQFDTLADGSRVPLPKPSVDTGMGLERLAAILQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+ +VTG     N   + RVI DH+RS++FLIADG++P+NEGRGYV
Sbjct: 241 HSNYEIDLFQALIRAAMRVTGCTDIEN--RSLRVIADHIRSTAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  +  +  L+  L  +MG AYPEL +    + + L+ E+E+F +
Sbjct: 299 LRRIIRRAVRHGYKLGCQDLFLFKLVDDLVDQMGEAYPELAEQADHVRKVLKIEEEQFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL+ G+ +L+  ++ + +  ++ G++ FKLYDT+G P D+  D+   +GL  ID   F  
Sbjct: 359 TLENGMTILEQGIADI-EGNVIPGELVFKLYDTYGFPADLTADVAREKGL-DIDQDGFES 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + EQR RA++ +        +          GAT F+GY+ L                 
Sbjct: 417 RMAEQRKRAQSANKFKMDRDLDLALD------GATNFLGYETLA---------------- 454

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V  +++  + V +   G +  V+ DQTPFYAE+GGQ GD G    +   
Sbjct: 455 -------AEGQVIRLLRGEDTVSQLSVGDEGVVILDQTPFYAESGGQAGDRGVITTEAAS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++ D QK  +G F+H   V  G+L+T+  +   +    R   + +HSATHLLH AL  +
Sbjct: 508 LEVIDCQKH-QGHFLHQVRVTDGVLKTDDRVAAKVQRNERENTARHHSATHLLHAALREV 566

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+HV Q GS +T D LRFD +H + +T+ EL  IE  VN  I  N  V T +M+ + A 
Sbjct: 567 LGTHVQQRGSLVTHDKLRFDFSHLEAVTAEELVQIETLVNHHIMANAEVTTELMDIDSAK 626

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA AL G KY+D+VRV+++       +S  LCGGTHV  TG+I L  IV+ES I AGI
Sbjct: 627 AAGAVALFGEKYDDQVRVLTMG---EDAYSKELCGGTHVQRTGDIGLFRIVAESGIAAGI 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RR+EA+ G  A + +  +D  +  L+   K S   +  +V++     + L+   +K K +
Sbjct: 684 RRVEAVAGPYALAEIRQRDAVVNRLSGQFKCSVDQLESKVQQAVAHSKDLEKELSKLKDK 743

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              +  V  ++  +  VD+K L+S MD ++ K+ S +I++V +  E K
Sbjct: 744 LASAAAGDLTSEVKDVQGVKVLAVRLDGVDAKSLRSTMDQMKSKLGSAVILIVAVDGE-K 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +   VT+DL   F A +L +     L G  GGG+P MA +GG + NK   A+  V ++
Sbjct: 803 VQLAAGVTKDLTATFKAGNLIKDVGA-LMGAKGGGKPDMAMAGGGDINKIPDALQAVPTW 861

Query: 896 LKK 898
           +++
Sbjct: 862 VEQ 864


>gi|114707288|ref|ZP_01440185.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537169|gb|EAU40296.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 912

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/910 (52%), Positives = 636/910 (69%), Gaps = 37/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KNGHE + SS L+P NDPTLMF N+GMV FKN+FTG+EK  Y  
Sbjct: 22  MSGVNEIRSAFLDYFAKNGHEKVSSSPLVPRNDPTLMFVNAGMVQFKNVFTGEEKRSYSR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW L+TK+F L
Sbjct: 82  AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWSLITKDFGL 141

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY ED+EA  LWKKI+GLS D+IIRI T+DNFW+M ETGPCGPCSEIFFD G
Sbjct: 142 PRDKLLVTVYSEDDEAAGLWKKIAGLSDDRIIRIGTSDNFWTMGETGPCGPCSEIFFDHG 201

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG PGS +E+G+R+IEIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 202 EDIPGGPPGSPNEDGDRFIEIWNLVFMQYEQLAGDERLDLPRPSIDTGMGLERIAAVLQG 261

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI A E   G + EG  + +HRVI DHLRS++FLIADG+LP+NEGRGY
Sbjct: 262 VHDNYDIDLFRTLIAAVENAIGSRAEGAAVASHRVIADHLRSTAFLIADGVLPSNEGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +ARLLG  EP++  LLP L  EMG AYPEL++ + LI ETL+ E++RF 
Sbjct: 322 VLRRIMRRAMRHARLLGAGEPVLYKLLPTLIAEMGRAYPELVRGEALIAETLKLEEKRFL 381

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL      +G  + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D+ +FN
Sbjct: 382 QTLDRGLSLLADATEGMGAGQKLSGETAFKLYDTYGFPLDLTQDALRQRGIA-VDLDAFN 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR    G G   TEK+WF ++++ GAT+F+GYD                  
Sbjct: 441 TAMERQKAEARKSWAGSGEAATEKVWFPIRDRVGATEFLGYDT----------------- 483

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V A+VQ G  V+ A +G+KV VV +QTPFY E+GGQLGD G       
Sbjct: 484 ------EEASGSVVALVQDGAEVKSATAGEKVFVVVNQTPFYGESGGQLGDAGVMTDGET 537

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I D QK A+G+FVH  IV+ G +  + +L L ++++ R ++  NHSATHLLH  L  
Sbjct: 538 VIEIEDTQKLADGLFVHRGIVKSGEVSVDDALDLKVEHRRRSKIRSNHSATHLLHEGLRE 597

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q GS + P+ LRFD +H KP+  AE++++E   N I+ QN PV TR+M  ++A
Sbjct: 598 VLGTHVAQKGSLVAPERLRFDFSHPKPMDRAEIEAVERLANGIVRQNAPVETRLMAVDEA 657

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           I SGA AL G KY D VRVVS+     G      +S+ LCGGTHVS+TGEI ++++V ES
Sbjct: 658 IESGAMALFGEKYGDEVRVVSMGTAQEGKKAGKPYSTELCGGTHVSATGEIGVVHVVGES 717

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA+TG+ AR +L  QD++++ +A+ LK S  + + R+E + EE R+L+   
Sbjct: 718 AVGAGVRRIEALTGEAARDYLREQDQRVRKMAALLKASPEDALARLETVVEERRRLEREL 777

Query: 775 A--KRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A  K++L L  E      S   +  ++++  +I  V  ++LK ++D  +K +QSG++  V
Sbjct: 778 AEVKKRLALAGEGGGKGDSAKTVNGISYLGRVIDGVSGRDLKGLVDEAKKSVQSGVVAFV 837

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++ E KASV++ VTEDL  RF+AV L R ++  +GG GGGGRP MAQ+GGP+ + A  A
Sbjct: 838 GVA-EGKASVVVGVTEDLTARFDAVTLVRTASGAIGGKGGGGRPDMAQAGGPDADNAAGA 896

Query: 889 IAGVASFLKK 898
           IA V   L++
Sbjct: 897 IAAVEKALQE 906


>gi|331006892|ref|ZP_08330140.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330419292|gb|EGG93710.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 877

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/915 (42%), Positives = 538/915 (58%), Gaps = 58/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  FL FF+ +GH +L SSSL+P NDPTL+FTN+GMV FK++F G +K  YQ  
Sbjct: 1   MNSADIRDAFLRFFETHGHTVLNSSSLVPNNDPTLLFTNAGMVQFKDVFLGSDKRDYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT      
Sbjct: 61  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHYAWTFLTSPDWMG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +   +L +TVY +D+EA+ LW K  GL A+KII I  N       DNFW+M +TGPCGPC
Sbjct: 121 IPAEKLTVTVYADDQEAYDLWHKDIGLPAEKIIHIGDNKGGKYQSDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+R+IEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEDIWGGLPGTPEEDGDRFIEIWNIVFMQFNRSADGSMAPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ V+Q   NNYDIDLF+HL+ AS  +TG +   +   + RVI DH+RS +FLI DG++
Sbjct: 241 RISAVMQGVHNNYDIDLFQHLLNASATITGAQNTEHK--SLRVIADHIRSCAFLIIDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+ AL   MG+AYPELI+ +  IE+ L
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGHKLGQQQAFFYQLVSALVEIMGTAYPELIKQQKHIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSH----LGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
             E+++F KTL++GL +L+ VL            + G+  F LYDT+G P D+  DI   
Sbjct: 359 LLEEQQFEKTLEKGLSVLESVLDSAEFTASASTQIPGETIFTLYDTYGFPTDLTNDIARE 418

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D+  + + +E QR+RARA       G     + S  E  G+TQF GYD + G  
Sbjct: 419 RELT-LDMPGYEKCMEAQRTRARAA------GKFSVDYSSSVELEGSTQFSGYDSVNG-- 469

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                   +  + Q    V+    G +  +V   T FYAE+GGQ
Sbjct: 470 ---------------------EGNIIGLYQNAIPVDTLKEGDEGVIVLSNTSFYAESGGQ 508

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G  + DG   ++ D QK      +H   V  G       +   +D   R+   +NH
Sbjct: 509 IGDSGYIVFDGGHFEVQDCQKNGSH-HLHIGKVLSGEFSVGNGVSTRVDSDVRQATVLNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+H AL  ILG HV Q GS +  + LRFD +H + ++  EL  IE  VND I  N 
Sbjct: 568 SATHLMHAALRKILGEHVVQKGSLVDSEKLRFDFSHLQALSGDELARIETMVNDEIRHNT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     + E A A GA  L   KY D VRV+S+    G   S  LCGG HV  TG+I +
Sbjct: 628 TVAVDHCDMEQAKAKGAMMLFDEKYGDEVRVLSM----GDGFSIELCGGVHVQQTGDIGV 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
            +IV+ES I +G+RRIEA+TG++A S L+   +    +A  +K +  N V ++E++  + 
Sbjct: 684 FHIVAESGIASGVRRIEAVTGKKALSRLLSYKQSTDQIAQLVKANSSNAVEKIEQLVVQL 743

Query: 768 RKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++ +   A  + +L   D      +  +IA VN ++H + + D K L+ + DAL+ ++++
Sbjct: 744 KEQEKAIASMQAKLASADSGDLLKNIKQIAGVNVLAHHVVDGDGKILRDMADALKSQLEN 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            + +LV  ++  K S+L  VT+DL  +F A DL R  A ++ GG GGGRP MAQ GG + 
Sbjct: 804 SVYLLV-TNQGDKVSLLAGVTKDLTAQFKAGDLMREVAPLV-GGKGGGRPDMAQGGGTDP 861

Query: 883 NKADQAIAGVASFLK 897
                 +  V  +++
Sbjct: 862 TGIQAVLDKVEQWVQ 876


>gi|114328034|ref|YP_745190.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|114316208|gb|ABI62268.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 945

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/887 (50%), Positives = 590/887 (66%), Gaps = 32/887 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+  Y  
Sbjct: 66  MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 125

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++T+EF L
Sbjct: 126 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 185

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              +L +TVY +D++A +LWK I+GL  ++IIRI ++DNFW M +TGPCGPCSEIF+D  
Sbjct: 186 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 245

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+E+     R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 246 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 305

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G +  +HRV+ DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 306 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 365

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG+AY EL+QA+ LI ETLR E+ RF 
Sbjct: 366 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 425

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL +L   +  LG+ + L+GDVAFKLYDT+G PLD+ QD L  +G   +D+  F+
Sbjct: 426 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQG-RAVDVAGFD 484

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA   G G    E +WF ++++ G T+F+GY                   
Sbjct: 485 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGYST----------------- 527

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                     + + A+V  G + E A +G +V VV +QTPFY E+GGQ+GDTG   G +G
Sbjct: 528 ------EKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 581

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ I+D QKK   +FVH   VE G+ +    + + +D+Q R  +  +HSATHLLH AL 
Sbjct: 582 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 641

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   PIT  +L  +E  VN +I QN PV TR+M  E 
Sbjct: 642 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 701

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A+A GA AL G KY D VRVVS+     E    +S  LCGGTHV  TG+I L  I  ES+
Sbjct: 702 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 761

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+TG+ A + +   + +L+  AS L+V+ G+V  RV  + EE +KL  QL 
Sbjct: 762 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 821

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A+RKL          ++  V   +  + +V  KELK + +A+ ++++SG++ LV  + E
Sbjct: 822 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVSTA-E 880

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            KASV++ VT DL  RF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 881 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 927


>gi|89071223|ref|ZP_01158404.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89043236|gb|EAR49465.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 885

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/893 (47%), Positives = 590/893 (66%), Gaps = 38/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL++F++ GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E   YQ 
Sbjct: 1   MTSLADIRSTFLDYFRRQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFK  AI  AW+++TKE D+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKADAIPFAWEMVTKELDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA +LW+K++GL  ++IIRI T+DNFW M  TGPCGP SEIFFD G
Sbjct: 121 PAERLLVTVYHDDDEAAELWRKVAGLPDERIIRIATDDNFWMMGPTGPCGPSSEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E   GG PGS  E+G+R+IEIWNLVFMQFEQ     R  L   SIDTGMGLER++++LQ 
Sbjct: 181 EKFWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTRRELAAQSIDTGMGLERISSLLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             N ++ DLF+ +I AS   +    +  ++ +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 241 TNNVFETDLFRAIIDASAHASNTSTDEAHLTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG ++PLM  L+PAL  +MG+AYPEL + + +IE+TL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGASDPLMHRLVPALVQQMGAAYPELREQQAMIEDTLETEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  ++ L   + L G+ AFKLYDT+G PLD+ +D L  RG++ +D+  FN
Sbjct: 361 NTLDRGLKLLDDEVARLETGKNLPGETAFKLYDTYGFPLDLTEDALRERGIS-VDLPGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++EEQ+ +ARA   G G    + +WF + +++G T F+GYD                  
Sbjct: 420 ASMEEQKRKARAAWSGSGEAADQTVWFDIADEHGTTDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G  VE A +G +V++V +QTPFYAEAGGQ+GD G    +  
Sbjct: 463 ------ETAEGQVLALVRDGAPVERAGAGAQVQIVLNQTPFYAEAGGQVGDAGTLTTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K   G++VH A V  G +       L +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 TAEITDCRK-IAGVYVHFARVTAGEIAAGEGARLEVDHARRGAIRANHSATHLLNEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS   PD LRFD +H+K + + ++ ++E  VN++I QN PV TRIM  ++A
Sbjct: 576 VLGDHVAQRGSLNAPDRLRFDFSHNKAMGADDIAAVEREVNELIRQNAPVTTRIMTPDEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG------VHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+   D G       +S  LCGGTHV+ TG+I L  + +E
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGIADTGKGLDGKTYSIELCGGTHVARTGDIGLFALTTE 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           ++  AG+RRIEA+TG+ A + L  +D  L  + + LK     V GRV  + +E + L  +
Sbjct: 696 AASAAGVRRIEALTGEAAMAELRRRDRSLGEVEALLKCGPDEVAGRVRALMDERKALANE 755

Query: 772 LIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   +R+L ++    E  +  +I  + F++ ++S V  K+L S++D ++  + +G ++L+
Sbjct: 756 VSQLRRQLAMSGGPAEGPAAREINGMRFVAQVLSGVTGKDLPSLIDGMKSDLGTGAVLLI 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               + KA+V   VT DL++R +AVDL R +   LGG GGGGRP +AQ GG +
Sbjct: 816 A-DTDGKAAVAAGVTADLVERVSAVDLVRAAVAELGGKGGGGRPDLAQGGGKD 867


>gi|283856345|ref|YP_162580.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|59802972|sp|Q9RNN8|SYA_ZYMMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|283775342|gb|AAV89469.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 890

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/914 (49%), Positives = 595/914 (65%), Gaps = 41/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E   Y+ 
Sbjct: 1   MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
           D  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+VLQ 
Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEGRGY
Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL +L+    HL   + L G VAF+LYDT+G P D+  D L AR L  +D   F+
Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +GS             
Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKGS------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                       + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G+  
Sbjct: 467 ----------GQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH AL 
Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M  E 
Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +IVSE
Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK +  
Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756

Query: 774 HAKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            A  +  L + + +           K+    F+  +I  +D K L+ ++D  +K I+SG+
Sbjct: 757 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I L+ +  E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+
Sbjct: 817 IALITV-NEGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875

Query: 885 ADQAIAGVASFLKK 898
           A QA+  V + L+K
Sbjct: 876 AAQALEAVKALLEK 889


>gi|163736400|ref|ZP_02143819.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161390270|gb|EDQ14620.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 883

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/893 (48%), Positives = 575/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT +   G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL +A+ +IEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELSGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + ++ G T F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V  G  V EA  G  V+VV +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 462 ------EAAEGQIMALVVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD  KKA G+F+H   VE G++    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K ++  EL+ +  +VN  I QN  V TRIM  +DA
Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSGEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+        +DG  +S  LCGGTHV  TG+I    I+S+
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A +HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEVANSLKAQPEEVMDRLKALMDERKALQNE 754

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K Q+ +   +       ++    F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +   K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|28899322|ref|NP_798927.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839216|ref|ZP_01991883.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|260878987|ref|ZP_05891342.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|260895460|ref|ZP_05903956.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|260903524|ref|ZP_05911919.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|31076994|sp|Q87LR3|SYA_VIBPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28807546|dbj|BAC60811.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747281|gb|EDM58267.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|308088224|gb|EFO37919.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308090433|gb|EFO40128.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308108704|gb|EFO46244.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|328474145|gb|EGF44950.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 860

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/911 (41%), Positives = 542/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGYVGTKGS------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQAAKYEE--------------KLAESAQKAKTLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         ++     +   +   DSK L++++D ++ ++ SG+++L
Sbjct: 730 ELQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +   +
Sbjct: 790 ANVT-DDKVGLIAGVTKDLVGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPE 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIKTVQPWLEE 858


>gi|149184401|ref|ZP_01862719.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21]
 gi|148831721|gb|EDL50154.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21]
          Length = 887

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/909 (47%), Positives = 595/909 (65%), Gaps = 36/909 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+FF    H  +PS+ L+P +DPTLMF N+GMVPFKN FTG E P    
Sbjct: 1   MTSTNEIRRSFLDFFASKDHAEVPSAPLVPFSDPTLMFVNAGMVPFKNAFTGLETPPAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLTK++ L
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDHAWTLLTKDWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EAF LWKK +G + ++IIRI T DNFW+M   GPCGPCSEIF+D G
Sbjct: 121 DKDRLLVTVYHTDDEAFDLWKKRTGFADERIIRIPTKDNFWAMGSDGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQF Q+  +    LPK SIDTGMG+ER+A V+Q 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFTQEADEIVGDLPKPSIDTGMGIERVAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI ASE +TG+K EG+   +HRVI DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIGASEALTGVKAEGDRQASHRVIADHLRSTSFLLADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG ++PLM  L+P L +EMG+AYPEL++ + LI+E L  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGASQPLMHRLVPELVSEMGAAYPELVRGQALIQEVLEREETQFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD     +G+   L+G  AFKLYDT+G P D+ +D L  RG+ G+D   F+
Sbjct: 361 RTLDKGLKLLDEATGDMGEGGTLDGGTAFKLYDTYGFPYDLTEDALRNRGI-GVDKDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G   +E++WF + E+ G+T+F GY                   
Sbjct: 420 AAMAQQKAAARAAWKGSGEAASEEVWFDIAEREGSTEFTGYSS----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                 +   + V A+V+ G+ V+ A  G+ V ++ +QTPFY E+GGQ GD G     +G
Sbjct: 463 ------DTGEAEVVALVKDGKEVDSAGEGEDVIILTNQTPFYGESGGQTGDAGRIWTPEG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  +++   K    +  H A + +G ++   ++   ID + R ++  NHSATHL+H AL 
Sbjct: 517 LEAKVSTTNKPLGRLHTHVATIAKGNVKVGDAVHFEIDAERRDRIRANHSATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS ++ D  RFD +H KP++  ++ +IE  VN+ I  N  V TR+M  +D
Sbjct: 577 NRLGGHVTQKGSLVSDDRFRFDFSHPKPLSDEDIAAIEAEVNEEIRANETVGTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A+A+GA AL G KY D VRV+S+     +G  +S  LCGGTHV +TG+I L  IVSES++
Sbjct: 637 AVAAGALALFGEKYGDEVRVLSMGRKGGEGKNYSVELCGGTHVEATGDIGLFKIVSESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEA+TG+ AR  L+ +DE ++++A+ LK S      RV  + +E ++L+   A+
Sbjct: 697 SSGVRRIEALTGEAARQWLLARDETVRAIAAALKTSPDEAATRVSALVDERKRLEKELAE 756

Query: 777 RK-------LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K               +  +I  V F   +I  +  K+L+ ++D  + ++ SG+  +  
Sbjct: 757 AKRALALGGGGAGDAAAADEEIGGVKFSGQVIEGLSPKDLRPLLDEAKTRMGSGVAAICA 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  E K +  + VT+DL +RF+AVD  R   + LGG GGGGRP MAQ GGP+G+KA+ AI
Sbjct: 817 V-NEGKGAFAVAVTDDLTERFSAVDFVRAGVEALGGRGGGGRPDMAQGGGPDGSKAEDAI 875

Query: 890 AGVASFLKK 898
           A V   L K
Sbjct: 876 AAVRDALAK 884


>gi|262273675|ref|ZP_06051488.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262222090|gb|EEY73402.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 860

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/907 (41%), Positives = 542/907 (59%), Gaps = 61/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FLEFF+  GH ++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLEFFESKGHAIVSSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF LW +  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KERLMVTVYETDDEAFALWNEKIGIPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQ+ +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQYNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NY+ID+F+ LI+++ +V G  Y+  +  + RV+ DH+RS +FLI DG++P
Sbjct: 243 IAAIMQGVHSNYEIDVFQTLIKSAAEVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG T      L+  L   MGSA  EL + + ++E+ L+
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLVGPLAEVMGSAGEELKKQQAVVEKVLK 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEENFGRTLDRGMAILNDALEAL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+E QR RAR        G     + ++ +  G + F GY    G       
Sbjct: 419 IDEEGFEAAMEAQRQRAREA------GQFGTDYNAVIKVDGESAFTGYGATEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                             ++  I   G   E   +  +  ++ DQTPFYAE+GGQ GDTG
Sbjct: 466 ----------------EGLITNIFVDGMASEALATADEAVIILDQTPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +  + ++ D QK    I  H   +  G L    ++   +D + R+ +++NHSATHL
Sbjct: 510 FLVTEAGKFEVIDTQKYGAAI-GHRGKLVDGTLSVGDTVDAKVDAERRQAIALNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +  +GLRFD +H + +   EL+++E  VN+ I +N  V T 
Sbjct: 569 LHEALRVVLGEHVQQKGSLVRAEGLRFDFSHLEAVKPEELRAVEKLVNEHIRRNHEVSTE 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN E A A GA AL G KY+D VRV+++     G  S  LCGGTH + TG+I +L IVS
Sbjct: 629 IMNIEAAKAKGAMALFGEKYDDNVRVLTM-----GDFSIELCGGTHANRTGDIGMLKIVS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AG+RRIEA+TGQ A      Q ++        KVS+     R+ E     +++QL
Sbjct: 684 EGGIAAGVRRIEAVTGQGAEEAFYSQQQEFAK-----KVSESQNRARLLE-----KEIQL 733

Query: 773 IHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K   Q +   + +  +I  +  +   +   DSK L++++D L+ ++ SG++ L  ++
Sbjct: 734 LKEKLAAQESANLINNVEEINGIKVLISKLDGADSKALRTMVDDLKNQMGSGVVFLANVA 793

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      A+A 
Sbjct: 794 -DDKVGLIAGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDVAALPAALAS 851

Query: 892 VASFLKK 898
           V+ +L +
Sbjct: 852 VSPWLAE 858


>gi|226945497|ref|YP_002800570.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|226720424|gb|ACO79595.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 874

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/914 (43%), Positives = 544/914 (59%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWEFLTSPKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L   +L++TVY  D+EA+ +W +  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 KLPAEKLWVTVYASDDEAYDIWTRTVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS+E +G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPEIWGGPPGSAEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ AS Q  G   +G    + +V+ DH+RS SFLIADG+
Sbjct: 240 ERISAVLQHVHSNYEIDLFQNLLAASAQAIGCANDG--APSLKVVADHIRSCSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG AYPEL Q +  IE  
Sbjct: 298 TPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVGALAAEMGDAYPELRQQRAQIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L   +++ GDV FKLYDT+G P D+  DI   R L
Sbjct: 358 LKNEEEQFAKTLEQGLKILEQDLAGLAA-KVIPGDVVFKLYDTYGFPADLTADIARERDL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +    T F GY+   G     
Sbjct: 417 T-IDEEGFEREMQAQRERARSAS------AFGLDYNSLVKVDADTLFTGYEETFG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ + G  VE    G++  VV D+TPFYAE+GGQ+GD
Sbjct: 465 ------------------QGQVVALFKGGATVERLGEGEEGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G      G+R  + D  K   G  +HH +V +G L    +L   +D   R   ++NHSA
Sbjct: 507 CGYLSDASGVRFDVRDTTK-VGGAHLHHGVVAKGGLHVGQALEAQVDGSVRGATALNHSA 565

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV Q GS +    LRFD +H + +T+ ++K++E  VN  I +N  V
Sbjct: 566 THLLHAALRRVLGEHVQQKGSLVNSQRLRFDFSHFEALTTEQIKALEALVNTEIRKNTAV 625

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T +++ + A   GA AL G KY D VRV+S+     G  S  LCGG H   TG+I L  
Sbjct: 626 ETEVIDIDSAKKKGAMALFGEKYGDNVRVLSM-----GDFSIELCGGIHARRTGDIGLFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV E  + AG+RRIEA+TG  A  +L   +E+LK +A  LK S+ N++ ++  + E  R+
Sbjct: 681 IVGEGGVAAGVRRIEAVTGAGALDYLNAAEEQLKEVAGLLKGSRDNLLDKLAGLLERNRQ 740

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+    + K +              ++A V  +S  +  +D K L +++D L+ K+ S +
Sbjct: 741 LEKELEQLKAKAASAAGDDLAGSAIEVAGVKVLSARLDGLDGKALLALVDQLKNKLGSAV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G   + K  ++  VT+D++ +  A DL + +A V+GG GG GRP MAQ GG    K
Sbjct: 801 ILL-GGEFDGKVVLVAGVTQDMIGKLKAGDLMKQAAAVVGGKGG-GRPDMAQGGGSEAGK 858

Query: 885 ADQAIAGVASFLKK 898
            D+A+A V  F+++
Sbjct: 859 LDEALALVRPFVER 872


>gi|285017964|ref|YP_003375675.1| alanyl-tRNA synthetase (alanine--tRNA ligase) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473182|emb|CBA15688.1| probable alanyl-trna synthetase (alanine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 883

 Score =  961 bits (2484), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/909 (42%), Positives = 546/909 (60%), Gaps = 49/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FLEFF+  GH ++PS+ LIP NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLEFFKGKGHAIVPSAPLIPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDEAYGLWRDMVGVPEERIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGAHIAGGPPGSPEEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++T      N   + RVI DH+R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTATTDLENK--SLRVIADHIRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +     L+P L   MG AYPEL+ A+ ++   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQGFFSKLVPTLVALMGEAYPELVAAQDIVLRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V +   +  ++ G+ AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAAKA-QGGVIAGEDAFRLYDTYGFPLDLTQDIARERAL-CVD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+EEQR RAR        G   ++   L      T F+GYD L+          
Sbjct: 424 EQGFETAMEEQRRRAREAGKF---GGGVQLPADLVATLAPTLFLGYDSLQADGLR----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V ++ D+TPFYAE+GGQ+GD G  
Sbjct: 476 -----------------VVALLKDGRPVQSAQAGDAVIILTDKTPFYAESGGQVGDIGIL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G R  +TD QK A     H   +  G L+    L   +D + RR   +NHSATHLLH
Sbjct: 519 LQGGTRCAVTDTQKFAGQFHGHVGTLIEGTLKIGDVLAGQVDAERRRATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI + EL  IE  VN  +  N  V    M
Sbjct: 579 AALREVLGTHVHQKGSLVAPDRLRFDFSHFQPIAAKELALIERKVNQQVRANHAVEVHQM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRV+ +     G +S+ LCGGTHV+ TG+I L  + SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGERVRVLKM-----GDYSTELCGGTHVTRTGDIGLFKVTSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++  L   A  +  S  ++V ++ ++ ++Y++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVSAEEAMLHEAAELVGGSANDMVDKIRQLGDKYKRLEREM 753

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +  V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 EALKAKLASSATADLAGSAVDVGGVKVLAVRLEGFDAKALREAMDRLKQQLGESVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S E K +++  V    + R  A +L    A  +  G GGGRP +AQ GG +G     A+
Sbjct: 814 AS-EGKVALVSGVNGSPMGRVKAGELLSHIASQIS-GKGGGRPDLAQGGGEDGPALVHAL 871

Query: 890 AGVASFLKK 898
           AGV  ++K+
Sbjct: 872 AGVTEWVKQ 880


>gi|167836924|ref|ZP_02463807.1| alanyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 854

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/894 (42%), Positives = 530/894 (59%), Gaps = 55/894 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTAVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPDVWGGPPGSPQEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQNLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHRLVADLVAEMGAAYPELKEAEPRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVL--LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +             + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADLEAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFRATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G+L+    +   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRGEIDAGRRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +ED VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEDIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLE 742

Query: 772 LIHA--KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG 
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGT 854


>gi|218530772|ref|YP_002421588.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218523075|gb|ACK83660.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 891

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/896 (49%), Positives = 585/896 (65%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYLK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY +DEEA  LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A         E +   ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+P L  EMG A+PEL +++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+  ARA   G G   TE +WF +KE+ GAT+F+GYD                  
Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     +++ A+++ G  VE   +G+   VV +QTPFY E+GGQ+GDTG   G G+
Sbjct: 463 ------EAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  +T  +KK   +FVHH  VE G L    ++ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 KAGVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRSNHSATHLLHEALRQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + P+ LRFD++H KPI  AEL  +E+  N ++ QN PVVT++M  ++A
Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLY 709
           I SGA AL G KY D VRVVS+                  S  LCGGTHVS  GEI  + 
Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ ES++ AG+RRIEA+TG  AR H   +   L  LA  LK    +V  R+  + EE R+
Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+   A  + ++ +           +I  V  M+ ++  V+ ++LK + D  + ++ SGI
Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + LVG+S + KA +++ VTEDL +R++AV L R  A  LGG GGGGR  MAQ+GGP
Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872


>gi|325924500|ref|ZP_08186019.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
 gi|325544995|gb|EGD16330.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865]
          Length = 882

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/909 (43%), Positives = 538/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAISWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIQESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLIPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+ID+F+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGVADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQATVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     E++ G  AF+L+DT+G P+D+  DI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFDDVASRA--QEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVATMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERADAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + I D QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGTGVSIDIADTQKFAGQFHGHVGRITEGALALGDVLSGGIDVQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A  L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 ASA-GKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV S++K+
Sbjct: 871 DGVHSWVKQ 879


>gi|320539040|ref|ZP_08038714.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030880|gb|EFW12885.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 875

 Score =  960 bits (2482), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/910 (41%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAISYAWELLTGEDWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++T+Y+ D+EAF +W+K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTIYETDDEAFDIWQKHIGVPAERIIRIGYNKGAAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGAMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ    NY+IDLF+ LI    +VTG     N   + RVI DH+R+ +FL++DG+ 
Sbjct: 243 RIAAVLQHVNANYEIDLFRTLISVVAKVTGATDLDNK--SLRVIADHIRACAFLVSDGVS 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNESRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVVPLIEVMGSAADELKRQQSRVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + E L+G++AF+LYDT G P+D+  D+   RGL 
Sbjct: 361 KTEEEQFARTLERGLALLDDELNKL-QGETLDGEIAFRLYDTFGFPVDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S           + ++    G+++F GYD          
Sbjct: 420 -VDEAGFQQAMEAQRRRARESS------GFCADYNTMIRVDGSSRFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             ++V A+ + G+ VE+  +G++  VV D TPFY E+GGQ+GD 
Sbjct: 463 -------------YEEQQAMVIALFRDGQPVEQINAGEEAVVVLDGTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          ++D QK  +    H   + +G L+ +  +   ID + R ++ +NHSATH
Sbjct: 510 GVLKAARADFVVSDTQKYGQA-TGHLGKLSQGSLKVKDRVDAQIDTERRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG HV+Q GS +    LRFD +H + +   +++ +ED VN  + +NL V T
Sbjct: 569 LLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHYEAMKPEQIRRVEDLVNQQVRRNLLVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ +DA   GA AL G KY+D VRV+++     G  S+ LCGGTH S TG+I L  IV
Sbjct: 629 EVMSLDDAKEKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHTSRTGDIGLFSIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AG+RRIEA+TG+ A + L  Q + L+ +A  +K    N+  ++    +  R L+
Sbjct: 684 TESGTAAGVRRIEAVTGEGAIAKLHQQSDLLQVVAHLVKGDSSNLADKLHATLDRTRLLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   +  V++K L+ ++D L+ ++ S II+
Sbjct: 744 KELQQLKDQQAAQESASLSSQAKVVNGVKLLVSQLDNVEAKMLRIMVDDLKNQLGSAIIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   + + K S++  VT+DL DR  A +L    A+ +  G GGGRP MAQ+GG + +   
Sbjct: 804 LATTA-DDKVSLIAGVTKDLTDRVKAGELIGNVAQQVA-GKGGGRPDMAQAGGTDVSALP 861

Query: 887 QAIAGVASFL 896
            A+  V +++
Sbjct: 862 AALNSVEAWV 871


>gi|326403001|ref|YP_004283082.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325049862|dbj|BAJ80200.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 878

 Score =  960 bits (2482), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/901 (48%), Positives = 594/901 (65%), Gaps = 30/901 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E   Y  
Sbjct: 1   MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TVY ED+EA  LWK+I+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQF ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS +V+    +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  EP +  L+PAL  +MG A+PEL +A+ LI ETL+ E+++F 
Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL+  +  LG  E L G VAFKLYDT+G PLD+ +D L  +   G+D   F 
Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQH-RGLDHEGFT 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQ++RARA   G G   TE +W  L+++ G T+F+GY                   
Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYSTEESD------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + A+V  G     A +GQ+V ++ +QTPFYAE+GGQ+GDTG     G+
Sbjct: 467 ----------ASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++TD QKKA  +FVH+  +E G +    S+   +D+  R  +  +HSATHLLH AL  
Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD++  +P+T AEL+++E  VN  I +N  V TR+M  ++A
Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +  GA AL G KY D VRVVS+   D G   +S  LCGGTHV+ TG+I    I++ES + 
Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGKSAYSIELCGGTHVARTGDIGAFRILAESGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           AGIRRIEA+TG+ A +      + L+  A+ LKV+   +  R+  + EE +  + Q+   
Sbjct: 697 AGIRRIEAVTGEAALAATEAAADLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +RKL          ++A + F +  + EV  ++LKS+ D++ K + SGI  LV  + E K
Sbjct: 757 QRKLATGGAASEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-EGK 815

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           AS+++ V+ DL DRFNAV L R +++ +GG GGGGRP MAQ+GGP+G KAD+A+A + + 
Sbjct: 816 ASIVVAVSPDLTDRFNAVTLVRAASEAVGGKGGGGRPDMAQAGGPDGGKADEALAAIRAS 875

Query: 896 L 896
           L
Sbjct: 876 L 876


>gi|269960382|ref|ZP_06174755.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269834809|gb|EEZ88895.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 860

 Score =  960 bits (2482), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 539/909 (59%), Gaps = 65/909 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTVTLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKGS------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  VE   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               + + + +E +KL  
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDAIEAQAAKYEE-------KLAESAQKAKSLEKEIQKL-- 734

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+          K+ D+N    +I      D+K L++++D ++ ++ SG+I+L  
Sbjct: 735 ---KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILLAN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +      AI
Sbjct: 792 V-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPAAI 849

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 850 QSVQPWLEE 858


>gi|262149022|ref|ZP_06028166.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|262031167|gb|EEY49787.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
          Length = 873

 Score =  960 bits (2482), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/895 (43%), Positives = 538/895 (60%), Gaps = 59/895 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG +
Sbjct: 360 RIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F QA+EEQR RAR        G     + SL +    T+F GY   RG      
Sbjct: 419 -IDEAGFEQAMEEQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDT
Sbjct: 466 -----------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDT 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D     + D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATH
Sbjct: 509 GVLKTDAGIFHVEDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T
Sbjct: 568 LLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+
Sbjct: 628 NIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AGIRRIEA+TG+ A  +L  Q        +        +  + + + +E ++L+
Sbjct: 683 SEGGIAAGIRRIEAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A ++    +      +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G  
Sbjct: 736 DKLAAKESAGLIN--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +   
Sbjct: 793 AEGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALP 846


>gi|320155348|ref|YP_004187727.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930660|gb|ADV85524.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 860

 Score =  960 bits (2481), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 543/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +   N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G+      
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNAKIKTESETEFCGYTGTQGN------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V  I  +GE  +   +G K  ++  +TPFYAE+GGQ GD+G
Sbjct: 467 -----------------SVVAEIFVEGEAADSLSAGDKAIIILGETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    Q+ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVSAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +           +   + + + +E ++L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQARKFEE-------KLQDAANKAKSLEKEIQQLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A +     ++     +IA V  +   +   D+K L+ ++D L+ ++ SGIIML G   
Sbjct: 737 KLASQASANLID--QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIML-GNVA 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+A V
Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|92112758|ref|YP_572686.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
 gi|122420679|sp|Q1QZX1|SYA_CHRSD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91795848|gb|ABE57987.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 868

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/904 (44%), Positives = 552/904 (61%), Gaps = 48/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF+++GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++   Y  
Sbjct: 1   MKS-ADIRQAFLTFFEEHGHTIVPSSSLVPANDPTLLFTNAGMVPFKDVFLGRDPRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L
Sbjct: 60  ATSAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRGAIRFAWTFLTERLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++TV+  D+EA ++WK   G+   +  ++   DNFW M +TGPCGP SEIFFD G
Sbjct: 120 PADKLWVTVHVSDDEAERIWKDEIGIDPARFSKL-DEDNFWQMGDTGPCGPSSEIFFDHG 178

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+RYIEIWNLVFMQF++ +      LPK SIDTGMGLER+A VLQ 
Sbjct: 179 PEVAGGPPGSPEEDGDRYIEIWNLVFMQFDRDSAGTLNPLPKPSIDTGMGLERVAAVLQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF++L+ A+ + TG  Y+  +  + RVI DH+RS +FLI D +LP+NEGRGY
Sbjct: 239 VHSNYEIDLFQNLLNAASEATG--YDDTSAPSLRVIADHIRSCAFLITDDVLPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  EP    L+ AL  EMG+AYPEL +A+  IE+ L  E+E+F 
Sbjct: 297 VLRRIIRRAIRHGHKLGAREPFFHTLVAALDAEMGAAYPELRKARPRIEKVLLKEEEQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD G+ LL   L  L   E+L G+  FKLYDT+G P D+  D+   RG+  +D + F 
Sbjct: 357 RTLDHGMGLLTEALETL-DGEVLPGETVFKLYDTYGFPFDLTADVCRERGVT-LDEVGFQ 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + LE QR RARA S           + +  +  G T F GY+ L                
Sbjct: 415 RELEAQRERARAASQFGA------DYTAALDLEGETAFTGYERLED-------------- 454

Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + V A+V ++G  +    +GQ   VV D+TPFY E+GGQ GDTG    DG
Sbjct: 455 ---------EARVTALVDREGNALAALEAGQHGVVVLDRTPFYGESGGQAGDTGYLEADG 505

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R Q+TD QK+  G  +HH ++  G L    S+   +D   R     NHSATHLLH AL 
Sbjct: 506 MRFQVTDTQKQ-GGHHLHHGVLVEGRLDVGASVTPRVDASLRAATMRNHSATHLLHEALR 564

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +T + LRFDV+H + +T A+L  +E  VN  I  N       M  ++
Sbjct: 565 QVLGEHVQQKGSLVTAERLRFDVSHFEAMTRAQLDEVERIVNAQILANAATRIEHMTLDE 624

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GAAAL   KY D VRV+++  +D    S  LCGGTHV+ +G+I   +I+SE+ + A
Sbjct: 625 AKAKGAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCFHILSEAGVAA 681

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ A ++   Q+ K+  +A  LK     V  R+E   E  R L+    + K
Sbjct: 682 GVRRIEAVTGEGALAYFRDQEAKVARVAEQLKAKPEQVEARLEATLERNRTLEKELERLK 741

Query: 779 LQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L             ++A V  ++  +  V  KEL+ ++D L+ K+ SG+I+L G++ +
Sbjct: 742 AKLASATSGDMLADVREVAGVKLLAKQVEGVGGKELRGLLDQLKNKLGSGVIVL-GVAGD 800

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           +K S++  VT+DL  R  A DL +  A+ + GG GGGR  MAQ+GG        A+A V 
Sbjct: 801 EKVSLIAGVTDDLTARLKAGDLVKHVAEQV-GGKGGGRADMAQAGGSRPQALPDALASVP 859

Query: 894 SFLK 897
           S+++
Sbjct: 860 SWVE 863


>gi|153835573|ref|ZP_01988240.1| alanyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148867838|gb|EDL67069.1| alanyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 860

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/909 (42%), Positives = 542/909 (59%), Gaps = 65/909 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKGS------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  VE   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               + + + +E +KL  
Sbjct: 684 EGGIAAGIRRIEAVTGEGALDAIEAQTAKYEE-------KLAESAQKAKSLEKEIQKL-- 734

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+          K+ D+N    +I      D+K L++++D ++ ++ SG+I+L  
Sbjct: 735 ---KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILLAN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +      AI
Sbjct: 792 V-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPAAI 849

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 850 QTVQPWLEE 858


>gi|254418413|ref|ZP_05032137.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196184590|gb|EDX79566.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 882

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/902 (47%), Positives = 571/902 (63%), Gaps = 34/902 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR T+L FF  +GHE + S+ L+P NDP+L+F N+GMVPFK+ FTG  KP Y  
Sbjct: 1   MPSLNEIRATYLNFFAADGHEKVHSAPLVPQNDPSLLFVNAGMVPFKDYFTGASKPPYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI  AW L+T+EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIDRAWKLVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY +D+EA  +WKK++G   DKIIRI  +DNFW+M ++GPCGPC+EIF+D G
Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDSGPCGPCTEIFWDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+RY+EIWN VFMQFE++N Q    LPK S+DTGMGLERM TVLQ 
Sbjct: 181 DKIAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDQIVRNLPKPSVDTGMGLERMTTVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + ++ DLFK LI ASE  T  K +G    +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 VHSVFETDLFKTLIAASEDATSTKSDGERAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL +A+  IE+TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVAQMGDAYPELARAQPFIEDTLKQEEVRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ L D  +      ++L+G  AF L DT+G PLD+ QD    RG + +++  F 
Sbjct: 361 TTLGRGMALFDTAVQGFKPGDMLDGQTAFTLSDTYGFPLDLTQDEARRRGFS-VNVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR R+R H  G G       W +++++ G T F GYD + GS             
Sbjct: 420 SAMAEQRQRSREHWKGSGQTANTNEWLAIRDRMGPTVFTGYDTIEGS------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A++  G  VE A +G  VE++FD TPFYAE+GGQ GD G     G 
Sbjct: 467 ----------GEVLALMNGGAPVETAEAGDIVEILFDNTPFYAESGGQTGDQGTLEWPGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ DV+K A  + V  A +  G L     +   +D   R     NHSA HLLH AL  
Sbjct: 517 EAEVLDVKKHAGDLHVLSAQITAGTLEIGARVAQLVDADKRMTTRANHSAAHLLHTALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V+Q G  +  +  RFD +H  P+T  EL +IE  VN +I QN+P  TR+M  ++A
Sbjct: 577 VLGPAVAQKGQLVDSERARFDFSHGAPVTEDELAAIEAEVNAVIRQNVPAETRLMAPQEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I +GA AL G KY D VRV+++      D   +S  LCGGTHV+ TG+I L  +V E+ +
Sbjct: 637 IEAGAIALFGEKYGDEVRVLTLGRSLVSDNAPYSVELCGGTHVARTGDIGLFKVVQETGV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ AR +L  Q +  ++LA   K+   +V GRVE +    + L+   A+
Sbjct: 697 AAGVRRIEALTGEAARLYLEAQAKVTRNLARDFKIQTQDVPGRVEALQGSVKTLEKQVAE 756

Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K QL +        +  +I  +  M+ ++  VD K L+ V +  +K++ +G++ L+G++
Sbjct: 757 LKKQLALGGGSGAASAPEEIGGIKLMARVLDGVDGKGLRGVAEDFRKQVGTGVVALIGVT 816

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E KA+V + VT DL DR NA DLAR +   +GG G GG+P  AQ G P+G+KA+  +A 
Sbjct: 817 -EGKAAVTVAVTSDLTDRVNAADLARTAVIAMGGQGAGGKPDFAQGGAPDGSKAEAGLAA 875

Query: 892 VA 893
           V 
Sbjct: 876 VR 877


>gi|83719349|ref|YP_443176.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620352|ref|ZP_02388983.1| alanyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|257139409|ref|ZP_05587671.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|123536505|sp|Q2SV73|SYA_BURTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83653174|gb|ABC37237.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 874

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/912 (41%), Positives = 533/912 (58%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E   Y   
Sbjct: 1   MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + L 
Sbjct: 61  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY +D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 ADKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSE 180

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D       G      E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF+ LI+AS + TG+    NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFQQLIKASARETGVADLANN--SLKVIADHIRACSFLIVDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG   P    L+  L  EMG+AYPEL +A+  + + LR 
Sbjct: 299 NEGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQ 358

Query: 354 EDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+           + L+G++AFKL+DT+G PLD+  D+   RG+ 
Sbjct: 359 EEERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 419 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+  +G  V E  +G+   VV D TPFYAE+GGQ+GD 
Sbjct: 467 ------------------AKVVALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQ 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G+L+   ++   ID   R + + NHSATH
Sbjct: 509 GVLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRARTARNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VN+ +  N P + 
Sbjct: 569 LMHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  +DA+  GA AL G KY D VRV+ +        S  LCGGTHV  TG+I L  IV
Sbjct: 629 RVMPYDDAVKGGAMALFGEKYGDEVRVLDLG------FSRELCGGTHVHRTGDIGLFKIV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E  + AGIRR+EAITG  A  ++   D ++ + A+ LK     ++ R+ ++ ++ + L+
Sbjct: 683 AEGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLE 742

Query: 772 LI--HAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +  D       ++  V+ ++  +   D+K L+  +D L+ K++S  I+
Sbjct: 743 KELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +    K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG       
Sbjct: 803 LAAV-DGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLP 860

Query: 887 QAIAGVASFLKK 898
            A+AGV  ++++
Sbjct: 861 AALAGVKGWVEE 872


>gi|24374938|ref|NP_718981.1| alanyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|38372525|sp|Q8EBS1|SYA_SHEON RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24349653|gb|AAN56425.1|AE015779_2 alanyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 874

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/909 (41%), Positives = 552/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLMLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVADLSNK--SLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L + + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDSALNEL-QGDTLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G+        
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYSELTGN-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+   GE V    +G    VV D TPFYAE+GGQ+GD G  
Sbjct: 466 ---------------AKVTALYLNGESVPAINTGDDAVVVLDVTPFYAESGGQVGDKGVL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  GI   + D QK  +    H   +  G L     L   +D + R +  +NHS THLLH
Sbjct: 511 MAQGIEFTVNDTQKFGQAS-GHKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +   ELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPFELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  AS LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAASLLKADAHSVVTKLKVQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L     +        +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 VAQEGKVNLIAGVSNDLIAKIKAGELVAMVATQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           + V  ++ +
Sbjct: 863 SQVLPWITE 871


>gi|160899488|ref|YP_001565070.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|205830045|sp|A9C0B9|SYA_DELAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160365072|gb|ABX36685.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 874

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 536/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y+  T
Sbjct: 7   TVADIRKSFLDFFASKGHTIVESSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYKRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L +
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPK 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS  E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGAHVAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T +        + +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAARETHIADI--ETPSLKVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP++ + +  I E LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVAVMGDAYPKIREQEARITEVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RGL+ +D
Sbjct: 365 EERFFETLANGMEILDAALA--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGLS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+EEQ+++ARA           K+  +L+    A  F GY  L           
Sbjct: 422 EAGFQTAMEEQKNKARAAGK-------FKMDRALEYTGDANAFTGYQKLA---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+  +G  V+E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 465 -------------EAAKVVALYAEGSAVQELKAGQSGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D Q R     NHS TH++H
Sbjct: 512 STAGARFAVEDTLKIKADVFGHHGVLESGSLKVGDAVQAEVDTQLRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H++P+T+ E++ IE  VN  I  N P   R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNQPVTAEEIREIERRVNAEILANTPTDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A A+GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +V E 
Sbjct: 632 DIESAKATGAMMLFGEKYGDSVRVLDIGS------SRELCGGTHVQRTGDIGLFKVVGEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    E+ R L+   
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKEV 745

Query: 775 A--KRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D    +   +  +  ++  +   D+K L+  MD L+ K+ +  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT+    R  A DL    A  + GG GGG+P MA +GG + +    A+
Sbjct: 806 VDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAAL 863

Query: 890 AGVASFLKK 898
           AGV +++ +
Sbjct: 864 AGVHAWVAE 872


>gi|325927198|ref|ZP_08188459.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118]
 gi|325542426|gb|EGD13907.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118]
          Length = 882

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/909 (43%), Positives = 538/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVAS--RSQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + +TD QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PIT+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRANHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +  V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|156975767|ref|YP_001446674.1| alanyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|205830285|sp|A7MYT5|SYA_VIBHB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156527361|gb|ABU72447.1| hypothetical protein VIBHAR_03511 [Vibrio harveyi ATCC BAA-1116]
          Length = 865

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 542/913 (59%), Gaps = 68/913 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            E+E FG+TL+RG+ +L+  L ++       ++L+G+  FKLYDT+G P D+  D+   R
Sbjct: 361 IEEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARER 420

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
             A ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS  
Sbjct: 421 EFA-IDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDTQTEFCGYTGTKGS-- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V A+  +G  VE   +G K  +V  +TPFYAE+GGQ 
Sbjct: 472 ---------------------SSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQC 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHS
Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHS 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  I +N  
Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHV 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L 
Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SE  I AGIRRIEA+TG+ A   +  Q  K +               + + + +E +
Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQAAKYEE-------KLAESAQKAKSLEKEIQ 737

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGII 825
           KL     K K+          K+ D+N    +I      D+K L++++D ++ ++ SG+I
Sbjct: 738 KL-----KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVI 792

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +    
Sbjct: 793 LLANV-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAAL 850

Query: 886 DQAIAGVASFLKK 898
             AI  V  +L++
Sbjct: 851 PAAIQTVQPWLEE 863


>gi|120602949|ref|YP_967349.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|205830078|sp|A1VEQ6|SYA_DESVV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120563178|gb|ABM28922.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
          Length = 879

 Score =  958 bits (2477), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/908 (42%), Positives = 534/908 (58%), Gaps = 43/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA +LW K S + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVFMQ++Q    +R  LPK SIDTGMGLER+  V Q
Sbjct: 181 EHMTCGPDCGIGKCDCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D D+F+ +IQ +  +  + Y  +       RVI DH R+ +F+I DGILP+NEG
Sbjct: 241 GVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G T+  +      +   MG  YPEL +    +   +R E++
Sbjct: 301 RGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEED 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD+GL +L+  L+ L       + GD+AF+LYDT G PLDI+ DI   RG + +D
Sbjct: 361 RFNRTLDKGLSMLEDELATLSASGAARVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQ+ RA+A   G G       +  L E+   ++FIGYD L G         
Sbjct: 420 EDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDHLCG--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            + A++ +  + VE   +GQK  +V ++TPFY  +GGQ GD G 
Sbjct: 471 --------------EGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++++ D  K +  + VHH     G +  +  + LT+   +R   + NH+ THLL
Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH  P+T  EL ++E  VN +I  ++P+ T  
Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRVV++  E     S  LCGGTH+ +TG+  L  IVSE
Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLIVSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A   ++ Q  +   L++ LK   G +V RVE + +E R L+  
Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   Q               +A V  ++  +   + K L+ +MD ++ K+ SGI  L 
Sbjct: 752 MERAAAQATSGQGRNIMDEATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACLA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  ++I V++DL  RF A  L +  A  + GG GGGRP MAQ+GG N    D A
Sbjct: 812 AVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV-GGSGGGRPDMAQAGGTNPAGIDAA 869

Query: 889 IAGVASFL 896
            A + S +
Sbjct: 870 FAKLRSLI 877


>gi|205830055|sp|Q0VNK2|SYA_ALCBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 863

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/904 (42%), Positives = 538/904 (59%), Gaps = 47/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F   GH  + SSSL+P NDPTL+FTN+GM  FK++F G+E   Y  
Sbjct: 1   MKS-AELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+  D+EA  +W K  G+SA++  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 120 PEERLWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 178

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS++E  +RYIEIWNLVFMQ+++Q   E   LPK S+DTGMGLER+A VLQ 
Sbjct: 179 ADVPGGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ L+QA+ + TG         + RVI DH+RS+SFLI DG++P+NEGRGY
Sbjct: 239 VHSNYEIDLFQALLQAAAKATGCTDLEEK--SLRVIADHIRSASFLICDGVIPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+ AL  EMG AYPEL + +  IE+ L +E+E+FG
Sbjct: 297 VLRRIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFG 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  G+ +L+  +  L    +L GDV F LYDTHG P D+  D+   R L+ +D+  F 
Sbjct: 357 RTLAAGMKVLESAIEQL-DGRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR RAR      G+G+    +         T F GY+ L                
Sbjct: 415 AAMAAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKLADDN------------ 456

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+ + G  V+   +G++  VV D+TPFYAE+GGQ+GDTG  I D  
Sbjct: 457 -----------TVVALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEA 505

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TD +K+ +   VH      G L     +   +D   R  +  NHSATHL+H AL  
Sbjct: 506 RFMVTDTRKR-QAAHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRN 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS ++ D LRFD +H + ++ A+ + IE  VN  I  N  V T +M+ E A
Sbjct: 565 VLGEHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL G KY+D+VRV+S+  +     S  LCGGTHV+ TG+I L  I  E+S  AG
Sbjct: 625 REAGAMALFGEKYDDQVRVLSMGSDG---FSKELCGGTHVNRTGDIGLFRITLEASAAAG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A + +  Q+  L  +A+ +K S  N   RV    ++ R+L+    + K 
Sbjct: 682 VRRIEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQ 741

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L              I  V  ++  I   D K L+  MD L+ K+ S +I+L  +  E 
Sbjct: 742 KLASGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGE- 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K +++  VT+DL  ++ A DL +  A+ +  G GGGRP MAQ GG N      A+  V +
Sbjct: 801 KVALVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKA 859

Query: 895 FLKK 898
           ++ +
Sbjct: 860 WVAE 863


>gi|158424478|ref|YP_001525770.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|205829980|sp|A8ICW8|SYA_AZOC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158331367|dbj|BAF88852.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 881

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/890 (50%), Positives = 601/890 (67%), Gaps = 33/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++F+++F KNGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSSFIDYFVKNGHEAVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+DL
Sbjct: 61  AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEWDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL  TVY +D+ A+ LWKK++GL   +IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLATVYYDDDVAYDLWKKVAGLPDSRIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER++ +LQ 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQYEQLP-GERLNLPRPSIDTGMGLERISALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DL + +I   +++T +   G    +HRVI DHLRSS FL+ADG+LP+NEGRGY
Sbjct: 240 THDNYETDLMRAIIAEVQELTNVPSNGPQKASHRVIADHLRSSVFLVADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+P L  EMG AYPE+++A+ L  ETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAQLLGAREPLMHRLVPVLVREMGRAYPEIVRAEALATETLLLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+   + L       G+VAFKLYDT+G PLD+ +D L  RG+  ++  +F+
Sbjct: 360 RTLERGLSLLEEESAGLVSGARFPGEVAFKLYDTYGFPLDLTEDALRGRGIE-VEREAFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ ARA+  G G   T+ +WF ++E+ GAT+F+GYD                  
Sbjct: 419 AAMERQKAEARANWSGSGEAATDTVWFGVREREGATEFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V+A+VQ+G+ V E  +G +  VV +QTPFY E+GGQ+GD+G   G+G+
Sbjct: 462 ------ETAEGAVRALVQEGKEVSELPAGARGFVVLNQTPFYGESGGQVGDSGLVSGEGV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  + + QKK   +FVH   V  G L+    L L +D+  R  +  NHSATHLLH AL  
Sbjct: 516 KACVLNTQKKLGDVFVHDVEVTEGTLKIGTPLALEVDHARRSAVRANHSATHLLHEALRR 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS + PD LRFD +H KP+T+ EL  +ED  N  + +N PV TR+M  +DA
Sbjct: 576 VLGDHVAQKGSLVAPDRLRFDFSHPKPLTADELAQVEDIANTYVLRNEPVETRLMAVDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +ASGA AL G KY D VRVVS+  +  +G   S  LCGGTHV  TG+I ++ ++++S + 
Sbjct: 636 VASGARALFGEKYGDEVRVVSMGTDSGNGAPFSVELCGGTHVKRTGDIGIVTVLADSGVA 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775
           AG+RR+EA+T   AR HL      L++ A  LKVS   V  RV  + EE RKL+  L  A
Sbjct: 696 AGVRRLEALTATAARRHLNAASTALQTTAGTLKVSTAEVEARVAALVEERRKLERDLAEA 755

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           ++KL +     S   + +VN   ++   IS  D K+LK+++D  + KI SG++ +   + 
Sbjct: 756 RKKLAMGGGGESGPAVIEVNGTRYLRIAISGADPKDLKAIVDEGKTKIGSGVVAVANTAA 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + K ++++ VT DL  +F+A  L R+  +VLGG GGGGRP MAQ GGP+G
Sbjct: 816 DGKGALVVGVTADLAGKFDAQKLVRIGVEVLGGKGGGGRPDMAQGGGPDG 865


>gi|148553432|ref|YP_001261014.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|205830213|sp|A5V3L0|SYA_SPHWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148498622|gb|ABQ66876.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 887

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/896 (50%), Positives = 589/896 (65%), Gaps = 38/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL+ F K GHEL+PS+ L+P NDPTLMF N+GMVPFKN+FTG EK  Y  
Sbjct: 1   MTSTNDIRRSFLDHFAKEGHELVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI LAW L+T  + +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISLAWSLITGTWGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TV+  D+EAF LWKKI G+   +IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 PADRLTVTVFHTDDEAFDLWKKI-GMPDSRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             IPGG PGS  E+G+R++EIWNLVFMQ+EQ +K+ R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 180 AHIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVDKETRIDLPRPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI AS ++T     G+   +HRVI DHLR+S FL+ADG+LPANEGRGY
Sbjct: 240 VHDNYDTDTFKALIAASGELTRTATNGDFKASHRVIADHLRASGFLVADGVLPANEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+P+L  EMG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAAEPLMHRLVPSLVAEMGAAYPELVRAQPLIEETLKLEETRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD     +   ++L G VAFKLYDT G P D+ +D L A+ L G+D   F+
Sbjct: 360 QTLANGLRLLDEATGAMKPGDVLPGAVAFKLYDTFGFPYDLTEDALRAQDL-GVDRSGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++ ARA   G G   ++++WF + E++G T+F GY    G              
Sbjct: 419 AAMAEQKAAARAAWKGSGEKASDEVWFDIAEEFGGTEFTGYVSEEGD------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                       + AIV+ G+ V EA +G +V +V +QTPFY E+GGQ+GD G   G DG
Sbjct: 466 ----------GQLLAIVKDGQRVAEAKAGDEVVLVTNQTPFYGESGGQMGDAGRITGDDG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           + + + D  K    +  H   V  G +RT  +L L +D   R ++  NHSATHLLH AL 
Sbjct: 516 LEIAVEDTAKPLGRVHAHRGTVVSGSVRTGDALHLVVDGDRRTRIRANHSATHLLHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LGSHV+Q GS +  D  RFD +H K +T  ++ +IE  VN  I +N  V TR+M  + 
Sbjct: 576 NRLGSHVTQKGSLVAADRFRFDFSHPKALTPEDIAAIEAEVNRHIRENDEVTTRLMTPDA 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV----HSSALCGGTHVSSTGEIMLLYIVSES 714
           AI +GA AL G KY D VRV+S+      +    +S  LCGGTHVS+ G+I L  I+SES
Sbjct: 636 AIEAGAMALFGEKYGDEVRVLSMGKAGRDLGAKSYSVELCGGTHVSALGDIALFKIISES 695

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RRIEA+TG+ AR  L  +DEKLK  A+ LK +  +V  R+  + EE RKL+   
Sbjct: 696 AVSSGVRRIEALTGEAARQWLTQRDEKLKEAAAALKTAPDDVPARIAVLVEERRKLEREL 755

Query: 775 AKRKLQLN------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           A+ K  L        E      +A V F+  ++  +D K L+ ++D  +  + SG+ ++V
Sbjct: 756 AEAKKALALGGGSKAEAAGPEDVAGVKFLPQVVDGLDPKGLRGLVDDAKASLGSGVSVIV 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +  + +ASV   VT DL+DR +AVDL + +   LGG GGGGRP MAQ GGP+G+K
Sbjct: 816 AV-NDGRASVAAGVTADLVDRISAVDLVKAAVAALGGQGGGGRPDMAQGGGPDGDK 870


>gi|46579502|ref|YP_010310.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|48428505|sp|P61700|SYA_DESVH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46448916|gb|AAS95569.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233316|gb|ADP86170.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 879

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/908 (42%), Positives = 534/908 (58%), Gaps = 43/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA +LW K S + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVFMQ++Q    +R  LPK SIDTGMGLER+  V Q
Sbjct: 181 EHMTCGPDCGIGKCDCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D D+F+ +IQ +  +  + Y  +       RVI DH R+ +F+I DGILP+NEG
Sbjct: 241 GVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G T+  +      +   MG  YPEL +    +   +R E++
Sbjct: 301 RGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEED 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD+GL +L+  L+ L       + GD+AF+LYDT G PLDI+ DI   RG + +D
Sbjct: 361 RFNRTLDKGLSMLEDELATLSASGAAHVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQ+ RA+A   G G       +  L E+   ++FIGYD L G         
Sbjct: 420 EDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDHLCG--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                            + A++ +  + VE   +GQK  +V ++TPFY  +GGQ GD G 
Sbjct: 471 --------------EGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++++ D  K +  + VHH     G +  +  + LT+   +R   + NH+ THLL
Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH  P+T  EL ++E  VN +I  ++P+ T  
Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ +DA+  GA AL G KY D VRVV++  E     S  LCGGTH+ +TG+  L  IVSE
Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLIVSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A   ++ Q  +   L++ LK   G +V RVE + +E R L+  
Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   Q               +A V  ++  +   + K L+ +MD ++ K+ SGI  L 
Sbjct: 752 MERAAAQATSGQGRNIMDEATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACLA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  ++I V++DL  RF A  L +  A  + GG GGGRP MAQ+GG N    D A
Sbjct: 812 AVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV-GGSGGGRPDMAQAGGTNPAGIDAA 869

Query: 889 IAGVASFL 896
            A + S +
Sbjct: 870 FAKLRSLI 877


>gi|116878605|ref|YP_357817.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123756582|sp|Q3A1W0|SYA_PELCD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114843241|gb|ABA89647.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
          Length = 882

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/908 (42%), Positives = 550/908 (60%), Gaps = 42/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ FL+FFQ +GH ++PSS+LIP NDPTL+F N+GM  FK++F G+EK  Y   
Sbjct: 1   MTGNEIRSRFLKFFQDHGHTVVPSSALIPHNDPTLLFINAGMNQFKDVFLGREKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI  AW  LT+E  L 
Sbjct: 61  TSAQKCVRAGGKHNDLENVGQTARHHTFFEMLGNFSFGDYFKKEAIDHAWKFLTEEMGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TV+ ED+EA+ +W+   G+  +++IR+   DNFWSM +TGPCGPCSEI  DQGE
Sbjct: 121 KDKLWVTVFREDDEAYDIWRDQQGIPEERLIRMGEKDNFWSMGDTGPCGPCSEILIDQGE 180

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+E+WNLVFMQF +        LPK SIDTGMGLER+  V+Q 
Sbjct: 181 SMSCGDECGIGKCDCDRYLELWNLVFMQFNRDADGTMTPLPKPSIDTGMGLERITAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DL + +I   E+++G +Y  N  + ++ RVI DH R+++FLIADG+LP+NEGR
Sbjct: 241 VQSNYDCDLLRGIIAHVEELSGKRYGDNAEHDMSMRVIADHSRATAFLIADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ +P++      +   M  AYPE  Q    + + ++ E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFADPVLYRTATFVLQSMAEAYPEPAQRADYVAKIVKIEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL +L   +  L      +L GDVAFKLYDT G PLD+  DIL    +  ID 
Sbjct: 361 FIQTLDNGLRILTEEVERLKAANATVLPGDVAFKLYDTFGFPLDLTADILRGENVT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +EEQR +AR H  G G      I+  L E+   T F GY  L G          
Sbjct: 420 DGFEACMEEQRQKAREHWKGSGEEAISGIYRQLAEEGARTDFTGYGELTG---------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+  G+ V  A +G KVE+V   TPFY E+GGQ GD G   
Sbjct: 470 -------------QSEILAILLDGQPVSSAPAGAKVEIVTAATPFYGESGGQTGDCGTLA 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + ITD +K    +FVH   +  G L+T  +  LT+D + R+  ++NH+ATHLL  
Sbjct: 517 AGDAEVTITDTKKPLPELFVHVGEIAAGTLQTGETATLTVDRERRQATALNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TP+ LRFD  H   +++ EL+ +E  VN  I +N  V TR M+
Sbjct: 577 ALVEVLGEHVKQAGSLVTPERLRFDFIHFSAMSAEELERVETLVNCRIRENAGVDTREMD 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A+A GA AL G KY D+VRVV V     G  S  LCGGTH +++G+I L  I+ E+ 
Sbjct: 637 HEQAVAEGATALFGEKYGDKVRVVRV-----GDISMELCGGTHANASGDIGLFKILQETG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG +A   +  Q+  L  LAS +K  +  +  R+ ++ E  ++L+    
Sbjct: 692 IAAGVRRIEAVTGAKALQVVRDQERTLDDLASLIKTDRPQLEARLRKLLERQKELEREIE 751

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN +          +I  ++ +   +  +D K L+ + D ++ ++ SG+++L G 
Sbjct: 752 SLQGKLNADQAGDLLQQATEIDGISVVCGRVDNLDGKALRELADQVRDRLSSGVLIL-GS 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + E KA +L+ VT+DL  R  A  L +  A ++GGGGG GRP +AQ+GG    + D+A+A
Sbjct: 811 AHEGKAGLLVAVTKDLTKRLQAGALVKQLAAMVGGGGG-GRPDLAQAGGSKPEQLDEALA 869

Query: 891 GVASFLKK 898
            V   + +
Sbjct: 870 SVPQRISE 877


>gi|78047331|ref|YP_363506.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|123585336|sp|Q3BUQ7|SYA_XANC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78035761|emb|CAJ23452.1| Alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 882

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/909 (43%), Positives = 537/909 (59%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL FF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  DEEAF LW+ + G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  +  +TG+    N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    ++P L   MG AYPEL+ A+  +   L +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + D V S     +I+ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDAGMKIFDEVAS--RSQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E QR  ARA     G      +   L      T F+GY+             
Sbjct: 423 MEGFEFAMERQRETARAAGKFGGGVA---LPADLVASMSPTVFLGYEAYDADAL------ 473

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++QG  VE A +G +V V  D+TPFYAE+GGQ+GD+G  
Sbjct: 474 ----------------KVVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+ + +TD QK A     H   +  G L     L   ID Q R +  +NHSATHLLH
Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +P T+ EL  IE  VN  +  N  V    M
Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPFTADELAVIERKVNAEVRANHGVEVHNM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIEA+TGQ A  ++  ++ +L   A+ L  +   VV +V  + E  ++L+   
Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLEREL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L          S   +  V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 753 ESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S   K +++  V      +  A +L    A  + GG GGGRP +AQ GG +G     A+
Sbjct: 813 AS-GGKVALVAGVNGSPTGKVKAGELLGHIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870

Query: 890 AGVASFLKK 898
            GV  ++K+
Sbjct: 871 DGVPLWVKQ 879


>gi|253990685|ref|YP_003042041.1| alanyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253782135|emb|CAQ85299.1| Alanyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 876

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 549/910 (60%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT    F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGKDWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D EA+ +W+   G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYHTDNEAYDIWQNKVGIPAERIIRIGDNKGVPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG   + NN  + RVI DH+RS +FLI DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVANVTGATDDLNNK-SLRVIADHIRSCAFLIGDGVI 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG T+     L+  L   MG+A   L   + ++E+ L
Sbjct: 302 PSNENRGYVLRRIIRRAIRHGNMLGATDTFFYKLVAPLIEVMGAAGEGLKHQQAIVEQVL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L  L  D IL+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 362 KTEEEQFARTLERGLQLLDDELVKLSGD-ILDGETAFRLYDTYGFPVDLTADVCRERNIK 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR RAR  S G G+   E I    +     + F GYD          
Sbjct: 421 -VDEDGFAVAMENQRRRARESS-GFGADYNELIKVDER-----SDFSGYD---------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         N   + V AI + GE V +  +G++  V+ D+T FYAE+GGQ+GD+
Sbjct: 464 -------------HNEQQAKVTAIFRNGESVNQIQAGEEAIVILDKTAFYAESGGQVGDS 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D QK  + I  H   +E+G L     L   ID + R  + +NHSATH
Sbjct: 511 GILSNADCAFCVIDTQKYGQAI-GHIGKLEKGTLSVNHELNAVIDVKRRDAIRLNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HVSQ GS +    LRFD +H + +   +++ +ED VN  I +N  V+T
Sbjct: 570 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAEIRKNSSVIT 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A   GA AL G KY ++VRV+S+     G  S+ LCGGTH S TG+I L  I 
Sbjct: 630 ELMDLEAAKVKGAMALFGEKYEEKVRVLSM-----GNFSTELCGGTHASRTGDIGLFRIT 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES   AGIRRIEAITG++A   +  Q + L+ +A  +K    N+  +V  I ++ + L+
Sbjct: 685 AESGTAAGIRRIEAITGKKALESVYQQFDLLQDIAQLVKGDINNLNDKVRGILDKTKVLE 744

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++         ++  V  +   ++  + K L++++D L+ ++ S II+
Sbjct: 745 KELQQIKDQNAAQESSSLASKAKEVKGVKLLVSQLNNTEPKTLRTMVDDLKNQLGSAIIV 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  IS + K S+++ VT+DL  R  A +L    A+ + GG GGGRP MAQ+GG +     
Sbjct: 805 LSTIS-DDKVSLIVGVTKDLTARIKAGELISSIAQQI-GGKGGGRPDMAQAGGSDVKSLP 862

Query: 887 QAIAGVASFL 896
            A+  V  ++
Sbjct: 863 SALDSVEDWV 872


>gi|302382286|ref|YP_003818109.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192914|gb|ADL00486.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 881

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/894 (47%), Positives = 568/894 (63%), Gaps = 33/894 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS++  IR+TFL+FF  +GH  + S+ L+P NDPTLMF N+GMVPFK+ FTG   P Y  
Sbjct: 1   MSSLKQIRSTFLDFFAADGHTKVHSAPLVPQNDPTLMFVNAGMVPFKDYFTGAATPPYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+ AW L+T+ + L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIEQAWKLVTEGYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY +D+EA  +WKK++G   DKIIRI  +DNFW+M + GPCGPC+EIF+D G
Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDNGPCGPCTEIFWDYG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS  E+G+RY+EIWN VFMQFE++N +    LPK S+DTGMGLERM +VLQ 
Sbjct: 181 DHVAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDEIVRSLPKPSVDTGMGLERMTSVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K + +D DLF+ LI ASE  T  K EG+   +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 KNSVFDTDLFQTLIAASEDATSTKAEGDRAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L +EMG AYPEL +A+  IEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVSEMGEAYPELARAQASIEETLKQEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ LL+     LG+  ++ G  AF LYDT+G PLD+ QD    RG   +D  +F+
Sbjct: 361 TTLGRGMGLLEDATRDLGEGGVIPGQTAFTLYDTYGFPLDLTQDEARRRGFT-VDTDAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+Q++R +A+  G G   +   W +LK++ G T F GYD + GS             
Sbjct: 420 AAMEQQKTRGKANWKGSGQTASTGEWLALKDRLGPTVFTGYDAVDGS------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AI++ G   +   +G+  EV+FDQTPFY E GGQ GD G     G 
Sbjct: 467 ----------GEVLAILKDGTAADSVETGETAEVLFDQTPFYGEGGGQAGDKGEIEWAGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ DV K    ++ H   V  G L       L      R     NHSA HL+H AL  
Sbjct: 517 SARVLDVLKPTGDLYAHTIEVTSGTLAIGTRAQLRAAPDARLTTRANHSAAHLVHAALKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H+ P+T  EL  IE  VN +I QNLP  T++M  ++A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHNAPLTEDELARIETEVNAVIRQNLPAETKLMGPQEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++         +S  LCGGTHV+ TG+I L  I SE+ I 
Sbjct: 637 IEAGAVALFGEKYGDEVRVLTLGKSLTSDKPYSVELCGGTHVARTGDIGLFKITSETGIA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRR+EA+TG+ AR  L+ Q    +SLA   KV   +V  RVE +  E + L+   A+ 
Sbjct: 697 AGIRRVEALTGEAARQFLLAQAGVARSLAQTFKVQPLDVPARVEALSTERKALEKQVAEL 756

Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +      + +  +I  V  ++ ++  VD K L+ V +  +K++ SG++ L+G++ 
Sbjct: 757 KKQLALGGGGSANAAPEEINGVKLIARVLDGVDGKGLRGVAEDFRKQVGSGVVALIGVT- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           + KA+V +  T D+ DR NA DLAR +   +GG G GG+   AQ G P+G+KA+
Sbjct: 816 DGKAAVTVAATSDVTDRVNAADLARAAVIAMGGQGAGGKADFAQGGAPDGSKAE 869


>gi|37680987|ref|NP_935596.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|41018162|sp|Q7MHR6|SYA_VIBVY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|37199737|dbj|BAC95567.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 860

 Score =  957 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/906 (42%), Positives = 540/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +   N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR      G+    KI          ++F GY   +        
Sbjct: 419 IDEAGFEKAMEEQRQRAREAGQ-FGTDYNAKIKVD-----AQSEFCGYTSTQ-------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +GE      +G K  V+  +TPFYAE+GGQ GD+G
Sbjct: 465 ---------------ERSDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    Q+ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +           +   + + + +E ++L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQARKFEE-------KLQDAANKAKSLEKEIQQLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A +     ++     +IA V  +   +   D+K L+ ++D L+ ++ SGIIML G   
Sbjct: 737 KLASQASANLID--QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIML-GNVA 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+A V
Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|117621345|ref|YP_858162.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|205829972|sp|A0KPG1|SYA_AERHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117562752|gb|ABK39700.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 874

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/910 (41%), Positives = 551/910 (60%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IRT FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   MSTSEIRTAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+   L 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +TVY  D+EAF +W+K  G+ AD+I+RI  N       DNFW+M +TGPCGPC+E
Sbjct: 123 KERLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER+
Sbjct: 183 IFYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+ + ++ G     N   + RVI DH+RS +FL+ADG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTSDLSNQ--SLRVIADHIRSCAFLVADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG TE     L   L  +M     ELI    L+E  LR 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATEVFFYKLAAELAAQMKDVAAELIAQLPLVERVLRI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL+LL+ VL++LG  +++ G+V FKLYDT+G P D+  D++  R + GI
Sbjct: 361 EEEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GI 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +E+QR+RA+  S   G    E +          T F GY  L          
Sbjct: 420 DEEGFKAEMEKQRARAKEAS-SFGVNYNEMLKLDF-----ETPFTGYKTL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I +  + V   ++G +  +V +QTPFYAE+GGQ+GD+G 
Sbjct: 464 -------------TERTRVVGIYKGVDEVSGLIAGDEAVIVLEQTPFYAESGGQIGDSGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     +TD  K  + I  H   +E G L     +   +D + R+ +++NHS THLL
Sbjct: 511 LKVDDGIFAVTDTVKAGKAII-HKGYMELGTLEKGAEVEAVVDGERRQAIALNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN+ I  N  + T++
Sbjct: 570 HAALRQALGEHVTQKGSLVGAERMRFDFSHFEGMTMATIRRVEELVNNQIRANHEITTQL 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++E
Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q  +  +V ++ ++ + ++  
Sbjct: 685 SGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQVLDKAKMMERE 744

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L  +          +I     +   +   D K L+ ++D L+ +++SG+++L 
Sbjct: 745 LEQLKAKLAAQAGNDLLGQVIEIKGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S E K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 -TSGEGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LQSVHSWLEE 872


>gi|330831302|ref|YP_004394254.1| alanyl-tRNA synthetase [Aeromonas veronii B565]
 gi|328806438|gb|AEB51637.1| Alanyl-tRNA synthetase [Aeromonas veronii B565]
          Length = 874

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/910 (41%), Positives = 551/910 (60%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  FLE+F+  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   MSTSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LT+   L 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL +TVY  D+EAF +W+K  G+ AD+I+RI  N       DNFW+M +TGPCGPC+E
Sbjct: 123 KDRLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ I GG PGS  E+G+R+IEIWN+VFMQF +Q       LP+ S+DTGMGLER+
Sbjct: 183 IFYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q   +NY+ID+F+ LI+ + ++ G     N   + RVI DH+RS +FL+ADG++P+
Sbjct: 243 SAIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQ--SLRVIADHIRSCAFLVADGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + R LG T+     L   L  +M     ELI    L+E  LR 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVAAELIAQLPLVERVLRI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TLDRGL+LL+  L++LG  +++ G+V FKLYDT+G P D+  D++  R + GI
Sbjct: 361 EEEQFVRTLDRGLLLLEDALANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GI 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   +E+QR+RA+  S   G    E +          T F GY  L          
Sbjct: 420 DEEGFKAEMEKQRARAKEAS-SFGVNYNEMLKLDF-----ETPFTGYKTL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I +  E V   ++G +  +V ++TPFYAE+GGQ+GD+G 
Sbjct: 464 -------------TERTRVVGIYKGVEEVSGLIAGDEAVIVLEETPFYAESGGQIGDSGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D     +TD  K  + I  H   +E G L     +   +D   R+ +++NHS THLL
Sbjct: 511 LKVDDGIFAVTDTLKAGKAII-HKGYMELGTLEKGAEVEAVVDGDRRQAIALNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL   LG HV+Q GS +  + +RFD +H + +T A ++ +E+ VN+ I  N  + T++
Sbjct: 570 HAALRQALGEHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNNQIRANHEITTQL 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A ++GA AL G KY D VRVV +     G +S+ LCGGTH   TG+I    I++E
Sbjct: 630 MDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIAE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
           S I AG+RRIEA+TG+ A   +    E+++  A+ +K  Q  +  +V ++ ++ +  + +
Sbjct: 685 SGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQMLDKAKMMERE 744

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K KL     +    ++ ++N    ++      D K L+ ++D L+ +++SG+++L 
Sbjct: 745 LEQLKAKLAAQAGNDLLGQVIEINGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        A
Sbjct: 805 TCA-DGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPAA 862

Query: 889 IAGVASFLKK 898
           +  V S+L++
Sbjct: 863 LQSVHSWLEE 872


>gi|83951874|ref|ZP_00960606.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83836880|gb|EAP76177.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 888

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/912 (48%), Positives = 584/912 (64%), Gaps = 41/912 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL F+++N H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MPTLNEIRSTFLNFYERNDHQIVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY  D+EA ++WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 NKDKLLVTVYHTDDEAAEIWKKYAGLSDDRIIRIATDDNFWSMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 181 PEIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTMRELDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS  VT    +G   ++HRVI DHLRSS+FLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHVTSQDPDGPGNIHHRVIADHLRSSAFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+RRIMRRAM +A LLG  +P+M  L+PAL T+MG A+PEL +A+ LI+ETL+ E+ RF 
Sbjct: 301 VVRRIMRRAMRHAHLLGAKDPVMHQLVPALVTQMGQAFPELGRAQSLIQETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L +   L G  AFKLYDT+G PLD+ QD L  +G   +D+  F+
Sbjct: 361 QTLDRGLRLLDDELGGLPEGAALPGQTAFKLYDTYGFPLDLTQDALREKG-REVDVSGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IWF + E +G T F+GYD                  
Sbjct: 420 EAMAEQKAKARAAWSGSGEAADATIWFDIAESHGTTDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V  G  V+ A  G  V+++ +QTPFYAE+GGQ+GDTG       
Sbjct: 463 ------ETAEGQIVALVADGAEVKSAGKGDSVQIILNQTPFYAESGGQVGDTGVIRSAEG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K   G+F+H   V  G L    +  L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 AAKITDTRK-VAGVFIHIGEVTEGKLVAGAAAQLEVDHTRRTAIRANHSATHLLHEALRN 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +HSK +++ EL  +   VN+ I QN  V TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSKAMSADELDQVAREVNEYIRQNTRVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+   DG         +S  LCGGTHV  TG+I +  I+ 
Sbjct: 636 RDIGAQALFGEKYGDEVRVVSMGSLDGSGKGLDGTTYSIELCGGTHVRQTGDIGMFVILG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  +G+RRIEA+TG  AR +L  QD ++ SL   ++    ++V RV  + +E + L  
Sbjct: 696 DSASSSGVRRIEALTGDAARGYLAAQDARVASLTGEMRCKPEDLVARVRGLLDERKALTN 755

Query: 773 IHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A+ + +L +   S         +I  V   + ++S V  K+L +++D  + ++ SG +
Sbjct: 756 EVAQLRRELAMAGGSGGAASDDLREINGVKLHAQVLSGVSGKDLPALIDEHKSRLGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L+      K +V   VT+DL +R +AV++ R +A  LGG GGGGR  MAQ GG + +KA
Sbjct: 816 LLIA-DTGGKVAVAAGVTDDLTERLSAVEMVRAAAPALGGKGGGGRADMAQGGGADASKA 874

Query: 886 DQAIAGVASFLK 897
           D+AIA V + ++
Sbjct: 875 DEAIAAVETLIE 886


>gi|27364961|ref|NP_760489.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|29611879|sp|Q8DC49|SYA_VIBVU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27361107|gb|AAO10016.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 860

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/906 (42%), Positives = 540/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +   N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEAMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDAL-EGKELDGETVFKLYDTYGFPADLTNDVAREREFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR      G+    KI          ++F GY   +        
Sbjct: 419 IDEAGFEKAMEEQRQRAREAGQ-FGTDYNAKIKVD-----AQSEFCGYTSTQ-------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +GE      +G K  V+  +TPFYAE+GGQ GD+G
Sbjct: 465 ---------------ERSDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    Q+ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +           +   + + + +E ++L+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALEAIDAQARKFEE-------KLQDAANKAKSLEKEIQQLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A +     ++     +IA V  +   +   D+K L+ ++D L+ ++ SGIIML G   
Sbjct: 737 KLASQASANLID--QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIML-GNVA 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL  +  A +L  + A+ + GG GGGRP MAQ+GG + +    A+A V
Sbjct: 794 DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSALASV 852

Query: 893 ASFLKK 898
            +++ +
Sbjct: 853 DAWIAE 858


>gi|319944272|ref|ZP_08018548.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319742567|gb|EFV94978.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 882

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/906 (39%), Positives = 534/906 (58%), Gaps = 56/906 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L+FF+  GH ++ SS ++P +DPTL+F N+GM  FK++F G +K  Y  
Sbjct: 1   MMKSAEIRQQYLKFFESKGHTIVASSPVVPHDDPTLLFANAGMNQFKDVFLGFDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+LLT  F L
Sbjct: 61  ATTAQKCIRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFAWELLTTVFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L +TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+
Sbjct: 121 PPEKLLVTVYAEDDEAYDIWAKQVGVPADRIVRIGDNKGARYASDNFWMMGDTGPCGPCT 180

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+R+IEIWN+VFMQ+ +    E   LP+ S+DTGMGLER
Sbjct: 181 EIFYDHGPEVAGGPPGSPEEDGDRFIEIWNIVFMQYNRDESGELHPLPRPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---TGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           +A VLQ   +NY+IDLF +L+ A+ +V    G   E  +  + +VI DH+R+  F I DG
Sbjct: 241 VAAVLQHVHSNYEIDLFVNLLAAAAKVVQDAGGTPETGSP-SLKVIADHIRACCFTIVDG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGRGYVLRRI+RRA+ +   +G  +P +  L+PAL  EMG AYPEL + +  IEE
Sbjct: 300 VVPGNEGRGYVLRRIIRRAVRHGYKMGARQPFLYSLVPALVKEMGEAYPELKRDQARIEE 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L+ E+ RF +T+  G+ LL+G L+ L   ++L+G+ AF+L+DT+G PLD+  D+   RG
Sbjct: 360 VLKGEESRFFETIANGMSLLEGALAGLKGKKVLDGETAFRLHDTYGFPLDLTADVCRERG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A+  QR +ARA     G+         L+     T+F+GYD L      
Sbjct: 420 VT-VDEAGFETAMAHQREQARAAGRFKGASL-------LEYDGETTRFVGYDEL------ 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+   G+  +E  +G +  VV D +PFYAE+GGQ+G
Sbjct: 466 -----------------SAQARVLALYHDGKPAQELKAGDEGVVVLDVSPFYAESGGQVG 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G   G G+R  ++D QK    ++ HH  VE G L+   ++   ++   R++ + NHSA
Sbjct: 509 DQGHLQGQGLRFAVSDTQKIQAAVWGHHGRVEEGSLKVGDTVQAQVNTALRQKTTRNHSA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + PD  RFD +H+KP+T  E++++E  VN  I  N   
Sbjct: 569 THLLHKALRQVLGDHVAQKGSLVDPDHTRFDFSHNKPMTPEEIQAVEAIVNAEIRSNTAT 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           V R M+ ++AIA+GA AL G KY        V        +  LCGGTHV+ +GEI +  
Sbjct: 629 VIRQMSYDEAIAAGAMALFGEKYG------DVVRVVDVADTRELCGGTHVARSGEIGVFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AGIRR++ +TG+ A + +  Q   L  +A+ ++     V  RV ++  + + 
Sbjct: 683 IASEGGVAAGIRRVDGLTGEGALAWIQQQLATLAEVAAAVRAPVAEVPARVAQLQTQVKD 742

Query: 770 L--QLIHAKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           L  +L   K     +       +        + +   +  +D+K L++ +D L+ +++S 
Sbjct: 743 LGRELDRVKASAASSQGQNLAAQATVLPCGAHLLVTRVDGMDAKALRATVDQLKDQLKSL 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L  +    K  ++  VT DL++   A ++    A  + GG GGG+P  A +GG +  
Sbjct: 803 VVVLASVEGNDKIQLVAGVTPDLVNTVKAGEMLGRVAAQV-GGKGGGKPDFAMAGGNDVA 861

Query: 884 KADQAI 889
             +  +
Sbjct: 862 ALEGVL 867


>gi|323492975|ref|ZP_08098113.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312806|gb|EGA65932.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 860

 Score =  957 bits (2474), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/906 (41%), Positives = 543/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKTVGVPADRIVRIGDKEGGKQYESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +  G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKAAAETIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGTAGEELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERDFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G+      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGYTGTQGN------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  I  +GE  E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SNVAEIFVEGEAAESLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAVVDAERRASISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL T+LG HV+Q GS + P+ LRFD +H + +T AELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRTVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +   +       ++   ++++ ++    + 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEEKLAESATKAKSLEKEIQKLKDKMAAAES 743

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +   K Q         +I  V  +   +   DSK L++++D ++ ++ SG++ML  +  
Sbjct: 744 ANIMGKAQ---------EINGVKVLIAGMEGADSKNLRTMVDDIKNQMGSGVVMLANV-N 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +    AI  V
Sbjct: 794 DGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPAAIQSV 852

Query: 893 ASFLKK 898
             +L++
Sbjct: 853 QPWLEE 858


>gi|299067646|emb|CBJ38855.1| alanyl-tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 888

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/917 (41%), Positives = 538/917 (58%), Gaps = 59/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 9   MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRSYTRA 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 69  TSVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 128

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 129 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 188

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 189 IFYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 248

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 249 GLERLAAILQHVHSNYEIDLFEALIAAASRETNTKDLSNN--SLRVIADHIRACSFLIVD 306

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L  +MG AYPEL  A+  + 
Sbjct: 307 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVVQMGEAYPELRDARDRVV 366

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L      +L+G++AFKL+DT+G PLD+ QD+  
Sbjct: 367 DVLRTEEARFFETIEHGMSILDGALGELKASGANMLDGELAFKLHDTYGFPLDLTQDVCR 426

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA       G  +    +L      T F GYD L   
Sbjct: 427 ENDVI-VDEAAFDAAMNRQREQARAA------GKFKMAVGTLDYTGDKTTFHGYDQLV-- 477

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 478 --------------------RETARVTALFVDGASVDAMQPGQTGVVVLDHTPFYAESGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D QK    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 518 QVGDQGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAARRARTMRN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG+HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 578 HSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                ++M  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 638 AATNAQVMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 691

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 692 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 751

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + L+    + K +L              +A +  ++  +   D+K L+  MD L+ K++
Sbjct: 752 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLK 811

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  I+L  +S + K +++  VT D   R  A +L    A+ + GG GGGRP MAQ+GG  
Sbjct: 812 TAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 869

Query: 882 GNKADQAIAGVASFLKK 898
            +K  QA+AGV +++++
Sbjct: 870 PDKLPQALAGVTAWVQQ 886


>gi|254786776|ref|YP_003074205.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237686567|gb|ACR13831.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 866

 Score =  957 bits (2473), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/903 (42%), Positives = 533/903 (59%), Gaps = 47/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL++F + GHE++ SSSL+P NDPTL+FTN+GMV FK++F G EK  Y  
Sbjct: 1   MMKSAEIRDAFLKYFAEQGHEVVNSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+  W+ LTK   L
Sbjct: 61  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRFGWEFLTKVLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+  D+EA  +W K  G+SAD+  R+   DNFW M +TGPCGP SEIF+D G
Sbjct: 121 PAERLWVTVHISDDEAADIWLKEVGVSADRFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 179

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS  +  +RYIEIWNLVFMQFE+Q+  E   LP+ S+DTGMGLER+A V+Q 
Sbjct: 180 ADVPGGPPGSENDDLDRYIEIWNLVFMQFERQSNGELVPLPRPSVDTGMGLERIAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ L++A+   TG     N   + RVI DH+RS SFL+ DG+LP+NEGRGY
Sbjct: 240 VHSNYEIDLFQALLRAAATATGTSDLENK--SLRVIADHIRSCSFLVCDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +   LG T      L+ AL  +MG AYPEL Q +  IE+ L +E+++F 
Sbjct: 298 VLRRIMRRAIRHGHKLGQTNSFFHTLVAALVEQMGDAYPELRQHQAQIEKVLLTEEQQFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+G+ +L+  L+ L    ++ G+  F LYDT+G P+D+  DI   R L  +D+  + 
Sbjct: 358 KTLDKGMAILEDSLAGL-DGSVIPGETVFTLYDTYGFPVDLTNDIARERSLT-LDLDGYE 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +E Q++RARA      SG+ +  + +     G T+F+GY  L                
Sbjct: 416 SLMEAQKARARA------SGSFKMDYTANLSLEGTTEFLGYTHLE--------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    S  V+A+ + GE V +   G +  +V  +TPFY E+GGQ GDTG       
Sbjct: 455 --------ESGKVQALFKDGEKVSQLNEGDEGVIVLSRTPFYGESGGQAGDTGYISTVAG 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++ D QK      +H  ++  G +  +  +   +D   R   ++NHSATHLLH AL  
Sbjct: 507 KFEVRDCQKSGSN-HLHIGVMLSGSIAEQNEVTACVDQSVRAATALNHSATHLLHAALRK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +    LRFD +H + +  AELK IE  VN  I +N  V T + + + A
Sbjct: 566 VLGDHVTQKGSLVDSQRLRFDFSHFEAVKPAELKQIERIVNGEIRRNTVVTTELCDMDTA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L G KY D VRV+S+    G   S  LCGGTHVS TG+I L+ I+SE  I +G
Sbjct: 626 KERGAMMLFGEKYGDEVRVLSM----GEGFSVELCGGTHVSRTGDIGLMRIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A   +  Q E L ++A  LK    ++  ++E++    + L+   A    
Sbjct: 682 VRRIEAVTGEHALVAVESQAELLSTVAGALKSGAESLPEKLEQLLARNKMLEKELAAANS 741

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             +I  +  +   +  VD+K L S +D L+ K+ S  I+L  +  E 
Sbjct: 742 KLAAASADEWLGEAQEIEGLKLLVKSLEGVDAKSLLSTLDQLKNKLGSCAIILASV-NEG 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K ++   V+ D   R  A DL +  A  + GG GGGRP MAQ  G +      A+A V +
Sbjct: 801 KIALAAGVSADSTKRLRAGDLLKYVATQV-GGKGGGRPDMAQGAGSDVAALPGALASVPA 859

Query: 895 FLK 897
           +++
Sbjct: 860 WVQ 862


>gi|56475970|ref|YP_157559.1| alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|81598995|sp|Q5P7Q3|SYA_AZOSE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56312013|emb|CAI06658.1| Alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 873

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/912 (41%), Positives = 540/912 (59%), Gaps = 57/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FF+  GH+++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-AEIREKFLKFFESKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+EF L
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWELLTEEFGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY +D+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKDKLWVTVYADDDEAYDIWTKEIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP+ S+DTGMGLER
Sbjct: 180 EIFYDHGPEIWGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPRPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY+IDLF+ LI+A+ + TG      +  + +VI DH+R+ SFLIADG++P
Sbjct: 240 VSAVLQHVHSNYEIDLFQTLIRAAARETGCADL--DSPSLKVIADHIRACSFLIADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        L+P L TEMG AYPEL   +  + + L+
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGSRAAFFHRLVPDLVTEMGPAYPELKAGQARVADVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ERF  T++ G+ +L+  L+ +        NG+ AFKL+DT+G PLD+  D+   R +
Sbjct: 358 QEEERFFATIENGMAILETELAAMATAGSRTFNGETAFKLHDTYGFPLDLTADVCRERDV 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D  +F+ A+  Q+ +ARA      +        +L+ +   T+F GY+ L       
Sbjct: 418 T-VDAAAFDAAMARQKEQARAAGKFRMAM-------NLEYEGPETKFHGYERLE------ 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ + G  V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 464 -----------------ERGTVLALYKDGAPVVELQEGDIGVVVLDNTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G   G     ++ D QK    ++ HH +V+ G L     L   +D + R     NHS T
Sbjct: 507 RGELRGSAGIFEVEDTQKIQAAVYGHHGVVKTGRLAVGQELGARVDGEARASTQRNHSVT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG+HV Q GS + PD  RFD  H+ P++  E++ +ED VN  I  N+   
Sbjct: 567 HLMHKALREVLGAHVQQKGSQVDPDKTRFDFAHTAPLSPEEIREVEDLVNAEILANVATE 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R+M+ +DA  SGA  L G KY D VRV+++        S  LCGGTHV+ TG+I L  I
Sbjct: 627 ARVMSIDDAQKSGAMMLFGEKYGDEVRVLAIGS------SKELCGGTHVARTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  + AG+RRIEA+TG  A  +   Q+ +++ +++ LKV    V  R+  I +  R L
Sbjct: 681 VSEGGVAAGVRRIEAVTGANALRYAQEQERRVQGISALLKVQPDEVAERIAGILDNVRAL 740

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L             ++     ++ ++   D   L+  +D L+ K++S +I
Sbjct: 741 EKELARMKSRLAASQGDELVAQAVEVRGAKVLAAMLEGADVATLRETLDKLKDKLKSAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  ++ + + S++  VT DL  +  A +L  + A+ + GG GGGRP MAQ+GG +    
Sbjct: 801 VLAAVA-DGRVSLIAGVTSDLTAKLKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDPAHL 858

Query: 886 DQAIAGVASFLK 897
             A+A V ++ +
Sbjct: 859 PAALASVKAWAE 870


>gi|297717784|gb|ADI50035.1| alanyl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13]
          Length = 865

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/890 (48%), Positives = 595/890 (66%), Gaps = 34/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F++N HE++ SSSL+P NDPTL+FTN+GMV FK++FTG EK  Y  
Sbjct: 1   MRTLADIRSTFLNYFKENRHEVVASSSLVPANDPTLLFTNAGMVQFKDVFTGLEKRSYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI LAW+L+TK F L
Sbjct: 61  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIYLAWNLVTKNFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY EDEEA  LWKKI+G    KIIRI T+DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 SPERLLVTVYHEDEEAANLWKKIAGFPDHKIIRIATSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS  ++G+R+ E WNLVFMQFEQQ    R  LPK S+DTGMGLER AT+LQ 
Sbjct: 181 ESIAGGPPGSADQDGDRFTEFWNLVFMQFEQQADGTRINLPKPSVDTGMGLERFATILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD DLFK LI+AS ++TG +       +H VI DHLR+SSFL+ADG++P+NEGRGY
Sbjct: 241 VHNNYDTDLFKSLIEASTELTGTQAAAYR-HSHNVIADHLRASSFLLADGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPLM  L+  L   MG+AYPEL +A+ +I+E L+ E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKEPLMYRLVDRLVEVMGTAYPELTRAQAMIKENLKLEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL+   + L   + L+G++AFKLYDT+G PLD+ QD+L ++    +D+  FN
Sbjct: 360 QTLERGLRLLEEETAKLAPTQALSGEIAFKLYDTYGFPLDLTQDVLRSQD-RSVDLEGFN 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++ ARAH  G G    E++WF +++++GA++F+GY+                  
Sbjct: 419 AAMAAQKAAARAHWSGSGEKKDEQVWFDIQQEFGASEFLGYES----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDG 538
                     ++V+AIV   + V    +GQ  ++VF+QTPFYAE+GGQ GD G     +G
Sbjct: 462 ------ETAEALVQAIVVNSQTVAHLSAGQTGDIVFNQTPFYAESGGQEGDQGVIHFANG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++ +  K    + VHH  +E G ++   +  L ++ Q R+ L  +HSATHLLH AL 
Sbjct: 516 AQARVLNTNKHLGSLHVHHVTLESGRIKVGETAKLVVNGQRRQGLRAHHSATHLLHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD TH+KP+T+ E+K+IE  VN  I  N  + T +M  E+
Sbjct: 576 RHLGGHVTQKGSLVAADRLRFDFTHTKPLTAEEIKAIEQEVNLQILANTAIETHLMAAEE 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AIASGA AL G KY D VRV+ +   DG  +S  LCGGTH S TG+I L+ I+SE+ + A
Sbjct: 636 AIASGAMALFGEKYGDEVRVLKMGQCDGAAYSIELCGGTHASRTGDIGLVKILSEAGVSA 695

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAK 776
           G+RR+EAI G  A  +L    E++  L+  LK     +  +++ + +E +  + QL   +
Sbjct: 696 GVRRLEAIAGIAALDYLRSLQEQISKLSFTLKCPSVEIPEKIDLLLQERKTFERQLADLR 755

Query: 777 RKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +K+ L            +I  +N ++  + ++ +K+LK ++D L+ +++SG+I+L  +  
Sbjct: 756 QKMALGGSSGTTVAGLKQIGHINVLTKNLVDIPAKDLKPLVDQLKTEVKSGVIILTSVV- 814

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           E K +++I VT DL D+ NAVDL R  ++VLGG GGGGRP MAQ+GG N 
Sbjct: 815 EDKVALVIGVTADLTDKVNAVDLVRAGSEVLGGKGGGGRPDMAQAGGSNP 864


>gi|312884640|ref|ZP_07744343.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367732|gb|EFP95281.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 860

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/911 (41%), Positives = 540/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLQFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   L 
Sbjct: 63  TSSQRCLRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIAFAWEFLTEILKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+I+RI           DNFW M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFNIWNQQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V  ++   N   + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQTLIKAAAEVISVEDLSNQ--SLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGTFFFKLVGVLADVMGSAGEELKRQQALVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L     D+ L+G+  FKLYDT+G P D+  D+   RG   
Sbjct: 361 IEEENFGRTLERGMAILNDALD-ASADKTLDGETVFKLYDTYGFPADLTNDVARERGFI- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+E QR RAR       +G     +    +   AT+F GY            
Sbjct: 419 IDEAGFEQAMEVQRQRAR------DAGQFGTDYNEAIKVDSATEFCGY------------ 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                       +      V A+  +   VE   +G K  +V D+TPFYAE+GGQ GD+G
Sbjct: 461 -----------TSTSALGTVDAMFVESRQVESLSAGDKAVLVLDETPFYAESGGQCGDSG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     + D QK    I  H+  ++ G+L ++  +   +D   R  +S+NHSATHL
Sbjct: 510 QICTDSGIFVVEDTQKLGNAI-AHYGWMKEGVLASKDKVEALVDKGRRNAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H + +T+ E+K +E  VND +  N  V T 
Sbjct: 569 LHAALRKVLGEHVTQKGSLVKADNLRFDFSHLEAMTADEIKQVERLVNDHVRLNHDVETD 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A + GA AL G KY+D+VRV+S+     G  S+ LCGG HVSSTG+I L  I S
Sbjct: 629 IMDIESAKSKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHVSSTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG  A   +  Q ++ +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGDAALDVIEAQHQQYEE--------------KLAESAQKTKALEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              K K ++   +         ++  V  +   +   DSK L++++D ++ ++ SG+++L
Sbjct: 730 EIQKLKDKMAAAESANIMGQVKEVNGVKVLVAKLEGADSKNLRTMVDDIKNQLGSGVVLL 789

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++++ K  ++  VT+DL+    A +L ++ A+ + GG GGGRP MAQ+GG +      
Sbjct: 790 ANVNQD-KIGLIAGVTKDLVGDVKAGELVKMVAEQI-GGKGGGRPDMAQAGGTDVTALPT 847

Query: 888 AIAGVASFLKK 898
           AI  V  +L++
Sbjct: 848 AIDSVQPWLEE 858


>gi|85703236|ref|ZP_01034340.1| alanyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85672164|gb|EAQ27021.1| alanyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 892

 Score =  956 bits (2472), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/895 (48%), Positives = 575/895 (64%), Gaps = 40/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 1   MPTLNEIRSTFLSFFERNDHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHREYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAATIWKKYAGLSDDRIIRIKTDDNFWSMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGTMRALDMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG A+PEL +A+ +IEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVAQMGQAFPELGRAQAMIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L+ L     L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLERGLRLLDDELTALDDSAALPGATAFKLYDTYGFPLDLTQDALREKG-REVDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + E+  AT F+GYD                  
Sbjct: 420 AAMAEQKAKARAAWSGTGEAADQAVWFDISEQVSATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V AIV +G+ V+    G    V+F+QTPFYAE+GGQ+GD G  +G  +
Sbjct: 463 ------EVSEAQVVAIVSEGKRVDAIEPGGTGWVIFNQTPFYAESGGQVGDQGRLVGKAV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              I+D +K   G+F H    + G L   MS+ L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 SGSISDTKKFPGGLFGHLFTPDEGRLGVGMSVKLEVDHSRRNAIRANHSATHLLHEALRK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++AEL+ +E  VN+ I QN PV TRIM  +DA
Sbjct: 577 ALGEHVAQRGSLNAEDRLRFDFSHAKALSTAELERVESEVNEFIRQNAPVETRIMTPDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  E       DG  +S  LCGGTHV  TG+I +   + 
Sbjct: 637 RALGAQALFGEKYGDEVRVVSMGAEAGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +++  AG+RRIEA+TG  A  +L GQ  +L  +AS LK    +V  RV+ + +E R L  
Sbjct: 697 DAASSAGVRRIEALTGAAAFDYLSGQAARLGQVASELKARPEDVADRVKALMDERRALAN 756

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L ++             +  V  ++ +++ V  K+L  ++D  + ++ SG +
Sbjct: 757 EVAQLRRELAMSGGAAQGGTVEARDVGGVKLIAQVMTGVQGKDLPPLIDEHKARLGSGAV 816

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +L+      K +V   VT+DL  R +AV++ R++   LGG GGGGRP MAQ GG 
Sbjct: 817 LLIA-DTGGKVAVAAGVTDDLTGRLSAVEMVRVAVVELGGKGGGGRPDMAQGGGT 870


>gi|319427213|gb|ADV55287.1| alanyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 874

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/909 (42%), Positives = 553/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWSFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK--SLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQA-TGHQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  +N +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGINVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|120553897|ref|YP_958248.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|205830137|sp|A1TZ92|SYA_MARAV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120323746|gb|ABM18061.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8]
          Length = 876

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 553/912 (60%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FLE+FQ+ GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   
Sbjct: 1   MKTAELRQAFLEYFQQQGHAIVPSSSLVPHDDPTLLFTNAGMNQFKDLFLGREERDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  +
Sbjct: 61  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGEQHLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L Q +L++TVY ED+EAF +W +  G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPQEKLWVTVYAEDDEAFDIWNQEIGVPAERIVRIGDNKGARYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLE
Sbjct: 181 TEIFFDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ L++A+  + G         + RV+ DH+RS +FLIADG++
Sbjct: 241 RIAAVLQGVHSNYEIDLFQDLLKAASDILGGA--ATTEASLRVVADHIRSCAFLIADGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG T+P    L  AL   MG AYP+L+ ++  IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGATQPFFYKLTGALVELMGEAYPQLVSSRKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD+GL LL+  ++ L   E + G+  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFAKTLDKGLRLLEQDIAELKGTE-IPGETVFTLYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S          I        G T+F GYD + G +    
Sbjct: 418 -LDYEGYEKAMEAQRDRARAASKFGIDYNAAGITIE-----GKTEFTGYDHVDGHE---- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               ++ ++  GE    A +G +  VV ++TPFYAE+GGQ+GDT
Sbjct: 468 -------------------RIRTVLVNGEE-RNAEAGDECVVVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R Q+TD +K+ +   +H   +  G L   + +   ID+  R +   NHSATH
Sbjct: 508 GLLTWSGGRFQVTDTRKEGDN-HLHVGTLIEGELFPGLEVDARIDHARRERTKRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG HV+Q GS + PD LRFD +H + +T  +L+ IE  VN+ I +N PV  
Sbjct: 567 LLHAALRNILGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERTVNEQILENTPVDI 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I + + A   GA AL G KY D VRV+++  +    +S  LCGGTHV+ TG+I L  I 
Sbjct: 627 DITDMDTAKEKGAMALFGEKYGDVVRVLTMGTDK---YSVELCGGTHVARTGDIGLFRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   +   +  L+  A  +K ++ +VV +V+++ +  R+L+
Sbjct: 684 SESGISSGVRRIEAVTGLGALEWVDETERTLRETARLVKGTRDSVVDKVKQVLDRNRQLE 743

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L     +       ++A +  ++  +   D K L    D L+ K+  G+++
Sbjct: 744 KDVDALKAKLASSAGTDLAGSAVEVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K  ++  VT+   +R  A DL +  A ++  G GGGRP MAQ GG + ++  
Sbjct: 804 LATV-EDGKVVLVAGVTKSATNRIKAGDLMKHLASLV-DGKGGGRPDMAQGGGNDPSRLA 861

Query: 887 QAIAGVASFLKK 898
           +A+AGV +++++
Sbjct: 862 EALAGVPAWVEQ 873


>gi|126175316|ref|YP_001051465.1| alanyl-tRNA synthetase [Shewanella baltica OS155]
 gi|205830201|sp|A3D783|SYA_SHEB5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125998521|gb|ABN62596.1| alanyl-tRNA synthetase [Shewanella baltica OS155]
          Length = 874

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 554/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEK--SLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K   L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDTALNEL-KGTTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VASGVEFTVNDTQKYGQA-TGHQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|258623803|ref|ZP_05718760.1| alanyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258583926|gb|EEW08718.1| alanyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 858

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/911 (42%), Positives = 539/911 (59%), Gaps = 69/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 121 KERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCT 180

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 181 EIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + RV+ DH+RS +FLI DG++P
Sbjct: 241 ISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLRVVADHIRSCAFLIVDGVMP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   L         L+  L   MG+A  EL + + L+E+ LR
Sbjct: 299 SNEGRGYVLRRIIRRAVRHGNKLSAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLR 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT+G   D+  D+   RG + 
Sbjct: 359 IEEENFGRTLDRGMSILNEALDQLS-GQVLDGETVFKLYDTYGFLADLTNDVARERGFS- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F QA+EEQR RAR        G     + +L +    T+F GY   RG       
Sbjct: 417 IDETGFEQAMEEQRQRAREA------GQFGTDYNALIKSATNTEFCGYTASRG------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S+V+ I  +G  V    +G K  +V D TPFYAE+GGQ GDTG
Sbjct: 464 ----------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + D  K    I  HH ++ +G+L     +   +D Q R  +S+NHSATHL
Sbjct: 508 VLKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+ E+K +E  VN  I +N  + T 
Sbjct: 567 LHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETN 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IMN ++A A GA AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 627 IMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A  ++  Q              Q     +V E+  + + L+ 
Sbjct: 682 EGGIAAGIRRIEAVTGEGALDYIEAQ--------------QAQHDAKVVEMAAKAKLLEK 727

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K +L  ++         +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML
Sbjct: 728 EIQQLKDKLAAKESAGLINQVKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIML 787

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            G   E K  ++  VT DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    
Sbjct: 788 -GNIAEGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPS 845

Query: 888 AIAGVASFLKK 898
           A+  V +++ +
Sbjct: 846 ALESVDAWIAE 856


>gi|297616546|ref|YP_003701705.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144383|gb|ADI01140.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 877

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/908 (41%), Positives = 543/908 (59%), Gaps = 45/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FL++F +NGH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MRTSSEIRKMFLDYFAENGHTVVESSSLVPANDPTLLFTNAGMNQFKDVFLGIDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG YFK  AI  AWDLLT+   L
Sbjct: 61  ATSSQKCVRAGGKHNDLETVGRTARHHTFFEMLGNFSFGDYFKREAIFYAWDLLTRVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++T++ +D+EAF+LW++I+G+S  KI+R+   DNFW+M +TGPCGPCSEI +D+G
Sbjct: 121 PPERLWVTIFTDDDEAFELWQEIAGISPQKIVRMGEKDNFWAMGDTGPCGPCSEIIYDRG 180

Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E      P  +    + +R++EIWNLVFMQF +        LP+ SIDTGMGLER+ ++L
Sbjct: 181 EKYRCDAPLCALGVCDCDRWLEIWNLVFMQFNRDEAGNLTPLPRPSIDTGMGLERITSIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +N+D DLF  +IQ  E++TG KY+ G      RVI DH R+ +FLI DG+LP+NEG
Sbjct: 241 QGVDSNFDTDLFIPIIQKIEEMTGKKYDRGPGGFPFRVIADHSRACTFLIGDGVLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ + RLLG   P +  ++  +  +M  +YP+L+  +  + + +R E+E
Sbjct: 301 RGYVLRRILRRAVRFGRLLGIEAPFLYRMVGVVVDKMKDSYPDLVDKQEFVAKVVRMEEE 360

Query: 357 RFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TL+ G+  +  ++        + ++G  AF LYDT+G PLD+ +D+    GL G++
Sbjct: 361 RFFVTLNEGIRKVGEIIERCQAEGRKDISGQDAFMLYDTYGFPLDLTEDMAEENGL-GVN 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN+ +EEQR RAR    G  +   EK    + E   +T F GY  L           
Sbjct: 420 KEDFNRLMEEQRERARRAQKGEDAFAQEKRLAEMLEGIPSTDFEGYQRL----------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + ++AI+   E ++    G    +V  QTPFYAE+GGQ+ D G  
Sbjct: 469 ------------FTLTQIQAIISGDEELDLIRDG-GAILVLAQTPFYAESGGQVADKGVI 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G      + DV KK  G  +H+  V +GIL     +   +D Q R   + NH+ATHLLH
Sbjct: 516 KGSEGTFIVDDV-KKVAGWILHYGRV-QGILVKNEEVQAEVDEQRRLATARNHTATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G H  Q GS + P+ LRFD +H  P+T  E+++IED VN  I     V   + 
Sbjct: 574 RALRMVVGEHAQQKGSLVEPERLRFDFSHFAPLTEEEIQAIEDIVNRKIWDLEKVEVDLA 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY D VRV+S+     G  S  LCGGTHV +TG+I L  I++E 
Sbjct: 634 TLEEAKQKGAMALFGEKYGDEVRVISI-----GDFSIELCGGTHVENTGQIGLFKIINEG 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQL 772
           SI AG+RR+EA+TG RA  +L  Q+ +LK+ AS LKV    +  RVE +  E +  + ++
Sbjct: 689 SIGAGLRRVEALTGPRALDYLNAQERELKTAASVLKVPAQELAQRVESLSRELKESEKEI 748

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
              K KL          +  +VN +  +++E+   D   L+   + L+ K+   +++L G
Sbjct: 749 EALKNKLARQEAAELLQQAFEVNGVKVLVAEMSGQDMAVLRQNGEMLRDKLGRAVVVL-G 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +++ K ++++ V ++L DR +A ++   +AKV+GGGGG GR  MAQ+GG    K  +A+
Sbjct: 808 SARDGKVNLVVFVAKELTDRLHAGEIVSAAAKVVGGGGG-GRADMAQAGGKIPEKLGEAL 866

Query: 890 AGVASFLK 897
               + ++
Sbjct: 867 QEARAKIE 874


>gi|260773533|ref|ZP_05882449.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260612672|gb|EEX37875.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 860

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/907 (42%), Positives = 538/907 (59%), Gaps = 59/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+   L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTEVVKL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + RL +TVY  D+EAF +W +  G+  D+IIRI           DNFW M +TGPCGPC
Sbjct: 122 PKERLLVTVYQTDDEAFNIWHQQIGIPQDRIIRIGDKPGGKAYESDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG PGS+ E+G+R+IEIWN+VFMQF +    +   LPK S+DTGMG+E
Sbjct: 182 TEIFYDHGEHIWGGPPGSAEEDGDRFIEIWNVVFMQFNRHADGKMEPLPKPSVDTGMGIE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ + Q   +NY+ID+F+ LI+A+ +V G  Y+     + RV+ DH+RS +FLI DG++
Sbjct: 242 RISAITQGVHSNYEIDVFQTLIKAAAEVIG--YQDLANQSLRVVADHIRSCAFLIVDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL +   L+E+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVAPLAEVMGSAGEELKRQHALVEKVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E FG+TL+RG+ +L+  L  + +  +L+GD  FKLYDT+G P D+  D+   RG  
Sbjct: 360 RIEEENFGRTLERGMAILNDALDAV-EGSVLDGDTVFKLYDTYGFPADLTNDVARERGFT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F  A+EEQR RAR       +G     + SL +  G T+F GY   +       
Sbjct: 419 -IDEEGFEAAMEEQRQRAR------DAGNFGTDYNSLIKVDGETEFCGYSATQKM----- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+   G+ V    +G K  VV + TPFYAE+GGQ GD 
Sbjct: 467 ------------------SPVSALFVDGQEVSALSAGDKAIVVLETTPFYAESGGQCGDA 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D QK    I  H+ +++ G+L +   +   +D + R  +S+NHSATH
Sbjct: 509 GLLRTASGVFKVEDTQKLGNAI-AHYGVMQEGVLASSDHVEALVDEKRRNAISLNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  I  N  + T
Sbjct: 568 LLHAALRQVLGEHVTQKGSLVRAENLRFDFSHLEAMTAAEIKQVERLVNAQIRLNHVIET 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ E A   GA AL G KY+++VRV+S+     G  S+ LCGG H S TG+I L  I+
Sbjct: 628 HVMDIESAKQKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASHTGDIGLFKIL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AGIRRIEA+TG+ A   L  Q  K +             + + +++ +E ++L+
Sbjct: 683 SEGGVAAGIRRIEAVTGEAALDALETQQHKYEE-------KLSEAMQKTKQLEKEIQQLK 735

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A +     ++      IA V  +   ++  D+K L+ ++D L+ ++ SGII+L G  
Sbjct: 736 DKLASQASANLID--QVKLIAGVKVLVAQLNGADNKALRGMVDELKNQLGSGIILL-GNV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG +      A+  
Sbjct: 793 ADDKVGLIAGVTNDLTAKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGSDAQALPLALES 851

Query: 892 VASFLKK 898
           V +++ +
Sbjct: 852 VDAWIAE 858


>gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300075693|gb|ADJ65092.1| alanyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 874

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/914 (41%), Positives = 547/914 (59%), Gaps = 61/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  FL+FF+   H ++ SSSL+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 1   MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L 
Sbjct: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K  GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 121 ADKLWATVYQTDDEAYDIWTKDIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  + GG PGS + +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 181 IFYDHGPDVWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A +LQ   +NY+IDLF+ LI+A+ + TG     N   + RVI DH+R++SFLI D
Sbjct: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSN--ASLRVIADHIRATSFLIVD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG T+P    L+  L  +MG+AYPEL +A   +E
Sbjct: 299 GVIPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFHKLVKDLVVQMGAAYPELPEAAERVE 358

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L+ E+ERFG+TL+ G+ +L+  L+       L+G+ AF LYDT+G PLD+  DI   R
Sbjct: 359 MVLKQEEERFGETLEHGMKILEAALA--ANTGKLDGETAFTLYDTYGFPLDLTADICRER 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A+E Q+S ARA           K+  +++     T+F+GY+ L     
Sbjct: 417 NVE-LDEAGFTAAMERQKSAARAAGK-------FKMAAAIEYTGDKTRFVGYESLA---- 464

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               S+ V A+   G  V++  +GQ   VV D TPFYAE+GGQ 
Sbjct: 465 -------------------QSAKVVALYVAGSPVQKIEAGQDAIVVLDTTPFYAESGGQC 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G          + D QK    +F HH  + +G L    ++   +D   R +   NHS
Sbjct: 506 GDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKGSLAVGDAVQAKVDADQRARTMRNHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LGSHVSQ GS +  D  RFD +H+ P+T+ E++ +E+ VN  +  N+ 
Sbjct: 566 ATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSHNAPMTAEEIRRVEEIVNREVLANVA 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              ++M  +DAIA+GA AL G KY D+VRV+S+        S+ LCGGTHV+ TG+I L 
Sbjct: 626 TGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIG------TSTELCGGTHVTRTGDIGLF 679

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE  + AGIRR+EA+TG+ A + +     ++   A+ LK     ++ R+ ++ ++ +
Sbjct: 680 KIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPRIGQVQDQVK 739

Query: 769 KLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSG 823
            L+   A  K KL  +  D   ++  D+N +  +   +   D   L+  MD L+ K+++ 
Sbjct: 740 ALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMDKLKDKLKTA 799

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            I+L G  K+ K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG    
Sbjct: 800 AIVL-GSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPA 857

Query: 884 KADQAIAGVASFLK 897
               A+ GVA +++
Sbjct: 858 ALPGALQGVAGWVQ 871


>gi|205830103|sp|Q0BSD5|SYA_GRABC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/887 (50%), Positives = 590/887 (66%), Gaps = 32/887 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+  Y  
Sbjct: 1   MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++T+EF L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              +L +TVY +D++A +LWK I+GL  ++IIRI ++DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+E+     R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G +  +HRV+ DHLRS+SFL+ADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L+PAL  +MG+AY EL+QA+ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL +L   +  LG+ + L+GDVAFKLYDT+G PLD+ QD L  +G   +D+  F+
Sbjct: 361 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQG-RAVDVAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR RARA   G G    E +WF ++++ G T+F+GY                   
Sbjct: 420 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGYST----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                     + + A+V  G + E A +G +V VV +QTPFY E+GGQ+GDTG   G +G
Sbjct: 463 ------EKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ I+D QKK   +FVH   VE G+ +    + + +D+Q R  +  +HSATHLLH AL 
Sbjct: 517 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   PIT  +L  +E  VN +I QN PV TR+M  E 
Sbjct: 577 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           A+A GA AL G KY D VRVVS+     E    +S  LCGGTHV  TG+I L  I  ES+
Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+TG+ A + +   + +L+  AS L+V+ G+V  RV  + EE +KL  QL 
Sbjct: 697 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 756

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A+RKL          ++  V   +  + +V  KELK + +A+ ++++SG++ LV  + E
Sbjct: 757 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVSTA-E 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            KASV++ VT DL  RF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 816 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 862


>gi|322421559|ref|YP_004200782.1| alanyl-tRNA synthetase [Geobacter sp. M18]
 gi|320127946|gb|ADW15506.1| alanyl-tRNA synthetase [Geobacter sp. M18]
          Length = 875

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/906 (42%), Positives = 541/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTGKEIRAQFFNFFQKKGHTLVESSNLIPKNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT E  L 
Sbjct: 61  VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTVELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY+TVY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 SDRLYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 GTGCGSPACAVGCDCDRYMEIWNNVFMQFNRSKDGTLTPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  EQV+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EP++  ++ A+   MG AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLYRVVDAVNVMMGEAYPELLEREHYVKKVILAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+   + +      +++G+V FKLYDT G P+D+  DI+ A G   +D 
Sbjct: 361 FIETLDRGLAILNEETAAMKAKGASVISGEVIFKLYDTFGFPVDLTADIVEAEGFT-LDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G      I+  L+    A++F+GY               
Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELRGTGIASEFVGY--------------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI++ G +VEE  +G ++E+V  +TPFY E+GGQ GDTG   
Sbjct: 465 --------AEQTAYSTISAIIKGGVLVEEGNAGDEIEIVTAKTPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G +R   ++ L +   +R   + NH+ATHLL  
Sbjct: 517 TGSAHVEVTASTRPFPDLIVHRGKVVSGNIRNGEAVDLKVATAHRAATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TPD LRFD TH  P+T+ E++ +E  VN  I  N PV  R M 
Sbjct: 577 ALREVLGEHVKQAGSLVTPDRLRFDFTHFSPMTAEEMRRVEVLVNGHIMGNSPVDAREMP 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+A GA AL G KY D VRVV V     G  SS LCGGTHV   GEI    I+SE+ 
Sbjct: 637 ATEALAGGATALFGEKYGDIVRVVRV-----GDVSSELCGGTHVHGAGEIGFFKILSEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A + +   +++ + +A+ LK   G+ + RVE++    R+LQ    
Sbjct: 692 IAAGVRRIEAQTGNGALAVVHQMEDEQRGIATLLKAEGGSTLDRVEKLLASQRELQKELE 751

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            +   +  ++  +   D+K L+ + D L+ +I SGII+L G 
Sbjct: 752 ALQAKLNANKSADLIQQVREQNGIKILAVKVEG-DAKGLRELSDTLKARIGSGIIVL-GA 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +   KA++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+ 
Sbjct: 810 ADAAKANLLVAVTSDLASRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPENLAEALE 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 AVFQIV 874


>gi|221133281|ref|ZP_03559586.1| alanyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 860

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/897 (43%), Positives = 544/897 (60%), Gaps = 49/897 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL++F ++GH+ + SSSL+P +DPTL+FTN+GM  FK++F G E+  Y    
Sbjct: 4   STAQIRQAFLDYFGQHGHQSVSSSSLVPHDDPTLLFTNAGMNQFKDVFLGAEQRNYSRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW  LTKE  L  
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWTFLTKELGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   GL  +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 124 EKLLVTVYAEDDEAFAIWENEIGLPPEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183

Query: 183 IPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG+PGS  E+G+R+IEIWNLVFMQ+ +        LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGVPGSPEEDGDRFIEIWNLVFMQYNKSADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+ID+F+ LI+A+ ++ G     +   + RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDIFQALIKAAAEIVGTVDLDDK--SLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ AL  +MG AYPEL++   +IE+ LR E+E+F +T
Sbjct: 302 RRIIRRAVRHGYKLGAQDIFFYKLVSALTQQMGDAYPELVEQLPVIEKVLRVEEEQFSRT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG+ +L   L+ L + +++ G+V FKLYDT+G P D+  D+     +  ID   F  A
Sbjct: 362 LERGMNILTQQLTEL-EGDVVPGEVVFKLYDTYGFPADLTADVAREHNVR-IDETGFETA 419

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++         +    +      +    +   AT F GYD                    
Sbjct: 420 MQA------QRARAQQASNFGTDYNEALKITHATDFTGYDKTTD---------------- 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIR 540
                     V  I+ +   V    +GQK  V+ D T FYAE+GGQ GD+G   + D   
Sbjct: 458 -------VGTVLEIIVENTSVTSIDAGQKGIVILDNTAFYAESGGQTGDSGVLKLNDAAV 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD QK A   F H  I  +  L    ++V  +D   R  + +NHSATHLLH AL  +
Sbjct: 511 FTVTDTQKLANA-FGHQGIA-KAKLSVGANVVTQVDDSRREAIKLNHSATHLLHAALREL 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  + LRFD  H + +T+ +L SIE  VN  I QN  + T++M  ++A 
Sbjct: 569 LGEHVAQKGSLVDDEKLRFDFAHYEAVTTEQLISIERLVNAQIRQNHELTTKLMELDEAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           ASGA AL G KY+++VRVVS+     G  S+ LCGGTHVS TG+I L  I SES I +G+
Sbjct: 629 ASGAMALFGEKYDEKVRVVSM-----GNFSTELCGGTHVSRTGDIGLCKITSESGIASGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITG+ A +++  Q   L++ A+ LKV   N++ R+    +  +  +    + K Q
Sbjct: 684 RRIEAITGEAAINYVQEQAYLLQNAANILKVEPINLIERINNNQDLLKATEKSLNQAKQQ 743

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +           I + N +   + +V+ K LK ++D L++KI SGII+L G+  + K
Sbjct: 744 LASQQGSDLMNQVQVIKEHNVLVANLPDVEVKALKGMLDELKQKISSGIIVL-GVPGDGK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +++  VT DL+++  A +L    A  + GG GGGRP MAQ+GG      + A+  V
Sbjct: 803 VNLIAGVTGDLINKIKAGELVNFVASQV-GGKGGGRPDMAQAGGTKPENLEHALTSV 858


>gi|217972432|ref|YP_002357183.1| alanyl-tRNA synthetase [Shewanella baltica OS223]
 gi|217497567|gb|ACK45760.1| alanyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 874

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 556/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEK--SLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + + AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGVEFTVNDTQKYGQA-TGHQGVLATGSLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|74316571|ref|YP_314311.1| alanyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259]
 gi|74056066|gb|AAZ96506.1| alanyl-tRNA synthetase, class IIc [Thiobacillus denitrificans ATCC
           25259]
          Length = 886

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/911 (40%), Positives = 535/911 (58%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+   Y  
Sbjct: 15  MKSSA-IRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSR 73

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L
Sbjct: 74  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKL 133

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W    G+   +I+RI  N       DNFW+M +TGPCGPC+
Sbjct: 134 PSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCT 193

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 194 EIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLER 253

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+Q   +NY+IDLF+ LI A+ + T     GNN  + +VI DH+R+ SFLI DG++P
Sbjct: 254 ISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNN--SLKVIADHIRACSFLIVDGVIP 311

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        ++P L   MG AYPEL++A+  + + LR
Sbjct: 312 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILR 371

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF +T++ G+ +L+  L  L    + +G++AFKL+DT+G PLD+  DI    G+A 
Sbjct: 372 QEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAGVA- 430

Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D  +F+ A+  Q+++AR A    LG+G        L     AT F GYD L        
Sbjct: 431 VDTAAFDAAMARQKAQARGAGKFKLGAG--------LDYAGEATTFHGYDTLA------- 475

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 476 ----------------REASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDR 519

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D  K    +F HH +V+ G L    S++  +D   R +   NHS TH
Sbjct: 520 GTLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTH 579

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD     P+T+A+++ +E  VN  I  N P   
Sbjct: 580 LMHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQA 639

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  IV
Sbjct: 640 RVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVARTGDIGLFKIV 693

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AG+RR+EAITG  A ++L  ++++++  A+ LK     +  ++ +  +  R L+
Sbjct: 694 SESGVAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALE 753

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L              I  V  ++  +  +D+K L+   D L+ K++S   +
Sbjct: 754 KDLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKS-CAL 812

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           ++G   + K S++  VT D+  +  A +L  + A  + GG GGG+P +A +GG +     
Sbjct: 813 VLGTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALP 871

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 872 AALASVEAWVQ 882


>gi|304410155|ref|ZP_07391774.1| alanyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302134|ref|ZP_07581892.1| alanyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304351564|gb|EFM15963.1| alanyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306914172|gb|EFN44593.1| alanyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 874

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEK--SLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           +  G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VASGVEFTVNDTQKYGQA-TGHQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|329849339|ref|ZP_08264185.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328841250|gb|EGF90820.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 878

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/903 (48%), Positives = 581/903 (64%), Gaps = 32/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR TFL++F +N HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNQIRQTFLDYFARNDHEVVASSSLVPQNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW LLTK++ L
Sbjct: 61  ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEHAWTLLTKDYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  R+  TVY +D+EAF+LWKKI+GL   +I RI  +DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 NPDRMMATVYIDDDEAFELWKKIAGLPESRIARIAGSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PG   E+G+R++EIWNLVFMQF+QQ    R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQFDQQPDGTRVNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLFK+LI AS + TG+  EG+++ +HRVI DHLRSSSFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDIDLFKNLISASVEATGVAAEGDSLPSHRVIADHLRSSSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EPL+  L P L  EMG  Y EL +A+  I ETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAYLLGSQEPLLHRLAPTLVAEMGGHYGELKRAEAAIVETLRQEEERFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+ LLD  +  L   ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++  F 
Sbjct: 361 RTLGRGMTLLDEAVRDLKSGDMLEGEVAFKLYDTYGFPLDLTQDAVRAKGLS-VNVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++E Q+ R R    G G   T   WF++KE  GA++F GYD L                
Sbjct: 420 ASMEAQKQRGRDAWTGSGEKATAAEWFAIKEAIGASEFTGYDHL---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V+AIV  GE +EEA++G  V +VF+++PFY E GGQ GD G       
Sbjct: 464 -------SAQGHVQAIVLDGETIEEALTGDTVSMVFEKSPFYPEGGGQAGDVGTVDFLHG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  + D Q++A  + VH   +  G ++      L +D   R+    NHSA HL+H AL  
Sbjct: 517 KGNVLDTQRQAGDLIVHRIEITEGRVKVGDKAELHVDAGKRKTTRSNHSAAHLVHAALRH 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q G  +  + +RFD +H  P+T  EL  IE  VN ++ QN    T++M  E A
Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGGPLTVDELARIEAEVNAVVLQNAAAATKLMTPEAA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           I +GA AL G KY D VRV+++    +  G +S  LCGGTHV+ TG+I L  IVSES I 
Sbjct: 637 IEAGAIALFGEKYGDEVRVLALGQALDGQGDYSVELCGGTHVARTGDIALFKIVSESGIA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ AR  L+ Q    +SLA   KV    V  RVE +  E ++L+   A+ 
Sbjct: 697 AGVRRIEAVTGEAARQFLLEQAGVARSLADQFKVPVSQVEARVEALVAERKRLEKELAEA 756

Query: 778 K----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           K    +          +I     ++ ++  V  K+L+ + +  +K++ SGI+ LVG   +
Sbjct: 757 KRALAVGGGGAASGPEEINGTKLIARVLEGVGGKDLRPLAEDFRKQVGSGIVALVG-KLD 815

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA+V + VT DL  R+NA +LA+ +   +GG G GG+P  AQ G P+ +KAD  +  V 
Sbjct: 816 GKAAVTVTVTADLTGRYNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDDSKADAGLEAVK 875

Query: 894 SFL 896
           + +
Sbjct: 876 ALI 878


>gi|300023633|ref|YP_003756244.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525454|gb|ADJ23923.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 897

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/919 (49%), Positives = 629/919 (68%), Gaps = 47/919 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ VS+IR++FL++F KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTGQE      
Sbjct: 1   MAGVSAIRSSFLDYFAKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGQETRAIPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+LLTK+F L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLLTKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +T+Y  D++A+K+WKK++G S D+IIRI ++DNFW M +TGPCGPCSEIFFD G
Sbjct: 121 DAKRLLVTIYHTDDDAYKIWKKVTGFSDDRIIRIASSDNFWQMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS + EG+R+IEIWNLVFMQFEQ+   +R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DKIPGGPPGSPDSEGDRFIEIWNLVFMQFEQRAPGDRIDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQ---VTGMKYEGNNI------VNHRVIVDHLRSSSFLIADGI 290
           K +NY+IDLF++LIQ+  Q    TG K  G +       V  RVI DHLRS+SFLIADG+
Sbjct: 241 KHDNYEIDLFENLIQSIRQEAAKTGAKETGGDASPEFLNVARRVIADHLRSTSFLIADGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRIMRRAM YA  +G  +PLM  L+P+L  EMG AYPEL++A+ LI ET
Sbjct: 301 LPSNEGRGYVLRRIMRRAMRYAHQMGCHDPLMHLLVPSLVREMGDAYPELVRAQPLITET 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ +F +TLD GL LL    + + K  +  GDVAFKLYDT G PLD+ +D L  RG+
Sbjct: 361 LKLEETKFKRTLDNGLKLLGESSASIKKGAVFPGDVAFKLYDTFGFPLDLTEDALKPRGI 420

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + +D  +F+ A+++Q+  A+A   G G   TE +WF +K+K GA++F+GYD         
Sbjct: 421 S-VDTNAFDAAMKKQKDAAKAAWKGSGEAATEGLWFEIKDKVGASEFLGYDT-------- 471

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                               IV A+V  G+  +   +G +  ++ +QTPFY E+GGQ+GD
Sbjct: 472 ---------------ETAEGIVAALVANGKDADTLKAGDEGALILNQTPFYGESGGQVGD 516

Query: 531 TGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G   G  G   ++TD QKK   +FVH   VE G      ++ + +D+  R     NHSA
Sbjct: 517 QGVIKGAKGALFRVTDTQKKLGDLFVHFGKVEAGSFTAGDAVEIEVDHARRTATRANHSA 576

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG+HV+Q GS ++PD LRFD +H+KP+++ E+K++ED  N ++ +N PV
Sbjct: 577 THLLHEALRQVLGTHVAQKGSLVSPDRLRFDFSHTKPMSAEEIKAVEDMANAVLLENTPV 636

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIM 706
           VTR+M  ++A ASGA AL G KY D VRVVS+     G     S  LCGGTHV+ TG+I 
Sbjct: 637 VTRLMALDEARASGAMALFGEKYGDEVRVVSMGSTRPGANKAWSVELCGGTHVTRTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V+ES   AG+RRIEA+TG+ AR++L  QD +++  AS LK    +++ R++ + EE
Sbjct: 697 LVRVVAESGSAAGVRRIEALTGEGARAYLDEQDARVREAASVLKTRPEDLIERLKHLVEE 756

Query: 767 YR--KLQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            +  + QL  AKRKL L       +    +   I +V  ++  +  ++ K+L+ ++D  +
Sbjct: 757 RKVLEKQLADAKRKLALGGGVNGASDGADAIRSIGNVKLLARTVQGLNPKDLRGLIDDGK 816

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K++ SGI+ +VG++++ KA + + VTEDL+  ++AVDL +  A+ LGG GGGGRP MAQ+
Sbjct: 817 KQVGSGIVAIVGVTEDGKAGLAVGVTEDLVKSWSAVDLVKAGAEALGGKGGGGRPDMAQA 876

Query: 878 GGPNGNKADQAIAGVASFL 896
           GGP+G KA  A+  + + L
Sbjct: 877 GGPDGAKAGDALKAIEARL 895


>gi|78357417|ref|YP_388866.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123552081|sp|Q30YS5|SYA_DESDG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78219822|gb|ABB39171.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 880

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/908 (43%), Positives = 546/908 (60%), Gaps = 42/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEFF+KNGHE++ SSSL+P +DPTL+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRHRFLEFFRKNGHEVVDSSSLVPNDDPTLLFTNAGMVQFKKIFLGQEKRAYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWSFITEELKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LYIT+Y +D+EA KLW+ ++G+ +++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKEKLYITIYRDDDEAEKLWQSVAGVPSERIYRLGEKDNFWSMGDTGPCGPCSEIHIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        + +R++EIWNLVFMQ++Q     R  LP   IDTGMGLER+A V Q
Sbjct: 181 ADMACGPDCGIGKCDCDRFLEIWNLVFMQYDQAPDGTRTPLPNPCIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
              +N+D DLF+  I  + ++ G+ Y     +     RVI DH R+ +F+IADGILP+NE
Sbjct: 241 NVRSNFDCDLFQAFINYTAELAGVSYRKDSEDTDTALRVIADHSRAIAFMIADGILPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + RL+G     +      +  EMG A+PEL++ K  +   +R E+
Sbjct: 301 GRGYVLRRLIRRAYRFGRLIGLEGSYLYKTALKVVEEMGGAFPELLENKDFMARVVREEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF KTLD+GL+LL+  LS L       + GDVAFKLYDT G PLDI+ DI   RG + +
Sbjct: 361 ERFNKTLDKGLLLLEDELSALTARNSTCVAGDVAFKLYDTFGFPLDIVNDIAEKRGFS-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + ++EQ+SRA+A   G G  T    + +L E+  A++F+GYD L          
Sbjct: 420 DEDGFKKLMQEQKSRAKAAWKGGGEQTLAARFQALLEEGIASEFVGYDHL---------- 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       +  S I+  + +  E VE   +G    +V  +TPFY E+GGQLGDTG 
Sbjct: 470 ------------SAESRIIALLGEDMESVEALPAGAAGYLVSTRTPFYGESGGQLGDTGD 517

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           A+ +    ++TD  K +  + VH   V +G L  + ++ LT+    R   + NH+ TH+L
Sbjct: 518 AVSETGSAEVTDTLKPSAKLLVHVVKVSQGELLRDQAVTLTVREGQRFASARNHTCTHIL 577

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + P+ LRFD TH   +T  E+ ++E+ VN +I  ++ + +  
Sbjct: 578 HAALRKVLGDHVKQAGSLVGPERLRFDFTHISAMTPEEILAVENEVNRVILSDIALNSEH 637

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  +DA+  GA AL G KY   VRVVS+  E     S  LCGGTH+ +TG+    YI SE
Sbjct: 638 MAYDDAVQKGAMALFGEKYESEVRVVSIPGE-----SVELCGGTHLRATGQAGSFYITSE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A    M Q  +L  +A  +K   G++ GRV+ + +E R L+  
Sbjct: 693 SGVAAGVRRIEAVTGWDAVRLFMQQRAELHEVAGLVKGKPGDIAGRVKTLQKEVRTLKKD 752

Query: 774 HAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K   Q           S  ++  V  ++  +   + K L+ VMD ++ K+ SG+  LV
Sbjct: 753 MEKLAAQAASGKGRNLMDSVEEVNGVKLLAASLPGANVKALREVMDDVRSKLTSGVACLV 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  +LI V++DL DRF A  L +  A  + GG GGGRP MAQ+GG +    + A
Sbjct: 813 AVDGD-KVHMLIAVSKDLHDRFTAPALIKDVAARI-GGSGGGRPDMAQAGGTDPQGVEDA 870

Query: 889 IAGVASFL 896
            A +   +
Sbjct: 871 FACLRQIM 878


>gi|83944501|ref|ZP_00956954.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83844703|gb|EAP82587.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 886

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/896 (47%), Positives = 565/896 (63%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+TVY  D+EA ++WKK++GL  D+IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G+ AFKLYDT+G P+D+ QD L  +    +D+  FN
Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G      IWF + EK G T F+GYD                  
Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATIWFDVAEKSGTTDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A++Q G  V E   G  V++  +QTPFYAE+GGQ+GDTG    D  
Sbjct: 463 ------ETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+F+H   V  G ++T  + VL +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 VVTVTDTRKTA-GVFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD +H+ P+T+ +L ++E+ VN  I QN  V TRIM  +DA
Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHPMTADQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  E G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +SS  +GIRRIEA+TG  A   L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L ++        +  ++  + F++ +++ V  K+L +++D  + K+ SG ++
Sbjct: 756 EVAQLRRELAMSGGGDASAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L+    + KA+V   VT DL    +AVD+ +     LGG GGGGRP MAQ G  + 
Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKDV 870


>gi|160876373|ref|YP_001555689.1| alanyl-tRNA synthetase [Shewanella baltica OS195]
 gi|205830203|sp|A9KYF8|SYA_SHEB9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160861895|gb|ABX50429.1| alanyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315268563|gb|ADT95416.1| alanyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 874

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 555/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEK--SLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + + ++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFSGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G+   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGVEFTVNDTQKYGQA-TGHQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKATELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|157961024|ref|YP_001501058.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|205830206|sp|A8H1T6|SYA_SHEPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157846024|gb|ABV86523.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 875

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/908 (42%), Positives = 548/908 (60%), Gaps = 55/908 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW  LT+E  L +
Sbjct: 64  SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+YD D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPCSEI
Sbjct: 124 ERLCVTIYDTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183

Query: 176 FFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PG   E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI+ +  + G+    N   + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAAILGVTDLENK--SLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRS 353
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG  A   L + + ++E++L++
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGADAAKGLQETQAIVEKSLKA 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F +TL+RGL +LD  L+ L  + +L+G+ AFKLYDT+G P+D+  D+   R +  +
Sbjct: 362 EEEQFARTLERGLGILDAALNELATN-VLDGETAFKLYDTYGFPVDLTADVCRERDIT-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+          S    +G  E  +         + F GY  L          
Sbjct: 420 DEAGFEVAMAA------QRSRAQAAGQFETDYNEGLIIDEQSGFTGYTDLNN-------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V AI + GE V+  V+G  V +V D TPFY E+GGQ GD G 
Sbjct: 466 ---------------QATVTAIFKAGESVDSIVAGDDVVIVLDNTPFYGESGGQCGDEGV 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            I DGI   +TD QK  + I  H   V  G ++    +   +D + R +  +NHS THLL
Sbjct: 511 LIADGIEFTVTDTQKYGQAI-GHIGRVATGTVKVGQVVTANVDKKLRHRTELNHSVTHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN  I +N  +   +
Sbjct: 570 HAALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAHELKEVEELVNTQIRRNHELTAEV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A   GA AL G KY+  VRVV++     G  S  LCGGTHV  TG+I L  I SE
Sbjct: 630 MDIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSE 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ + L+  
Sbjct: 685 GGIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAAALLKGDSASVVAKLKAQLDKTKLLEKE 744

Query: 774 --HAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLV 828
               K KL          +  DVN +  ++     VD+  L+ + D L++K+QSGI++L 
Sbjct: 745 LSQLKDKLAAATSADLAGEAVDVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            I+ E K ++++ VT+DL  +  A +L    A  + GG GGGRP MAQ+GG      D A
Sbjct: 805 -IAGEDKVNMIVGVTKDLTGKVKAGELVASIAVQV-GGKGGGRPDMAQAGGSQPENLDAA 862

Query: 889 IAGVASFL 896
           +  V  ++
Sbjct: 863 LEQVIPWI 870


>gi|197336333|ref|YP_002155293.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|197317823|gb|ACH67270.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 859

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/905 (41%), Positives = 536/905 (59%), Gaps = 58/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL +TVY+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 ADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ LL+  L +L +  +L+G+  FKLYDT+G P D+  D+   R L  I
Sbjct: 361 EEENFGRTLERGMALLNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERDLT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR        G     + ++ +    T F GYD            
Sbjct: 419 DEDGFEKAMEEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDSTE--------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+ ++GE V+   +G +  ++ DQTPFYAE+GGQ GD G 
Sbjct: 464 --------------AKASVIALFREGEEVDALSAGDEAILILDQTPFYAESGGQCGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD  K    I  HH  +  G+L      +  +D   R  + +NHSATHLL
Sbjct: 510 ITVETGKFVVTDTHKIGNAI-GHHGKLVEGVLSKADHAMAQVDETRRAAIILNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + + + EL+ +E  VN  I  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG+ A   +  Q +                  + +++ +E ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADK-------KLNEAASKAKQLEKEIQQLKDK 736

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A ++    +      +IA    +   +   D+K L+ ++D L+ +I SGIIML G   E
Sbjct: 737 LASQESASLINK--VQEIAGTKVLVAQLDGADNKALRGMVDELKNQIGSGIIML-GNVSE 793

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG +      A+A V 
Sbjct: 794 GKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNALASVE 852

Query: 894 SFLKK 898
           ++L +
Sbjct: 853 AWLTE 857


>gi|83594150|ref|YP_427902.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123525949|sp|Q2RQI0|SYA_RHORT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83577064|gb|ABC23615.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
          Length = 883

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/891 (48%), Positives = 590/891 (66%), Gaps = 35/891 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS  S IR TFL+FF KNGH+ + SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MSTTSEIRRTFLDFFVKNGHQEVASSPLVPLNDPTLMFTNAGMVQFKNVFTGAETRPYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW L+T+E+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDFAWRLITEEYAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TV+  DE+A  LW+K++GL  ++IIRI TNDNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVHTSDEDAAGLWRKVAGLPDERIIRIPTNDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS++E G+R+IEIWNLVFMQFEQ    +R  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PKVAGGPPGSADENGDRFIEIWNLVFMQFEQLTVDQRVALPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDL + LI+A     G   +G + V+HRVI DHLRS+ FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDIDLMRALIEAIASAAGTDPDGPHKVSHRVIADHLRSACFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G  +PLM  L+PAL  EM   +PEL +A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHMMGCVDPLMFKLVPALNREMADQFPELNRANALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           + LDRGL LL      L   + L G VAFKLYDT+G PLD+ QD L  RG+ G+D   F+
Sbjct: 361 QMLDRGLKLLAEETGDLASGDSLPGPVAFKLYDTYGFPLDLTQDALRPRGI-GVDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR  AR    G G   TE +WF ++++ GA++F+GY                   
Sbjct: 420 AAMARQREDARKSWTGSGDHATEAVWFDIRDRVGASEFLGYTSTD--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDG 538
                       + A+V  G++VE A +  +V V+ +QTPFY E+GGQ+GD G   + +G
Sbjct: 465 --------AEGAIVALVVDGKVVESAPADTEVAVIANQTPFYGESGGQMGDAGEIRLAEG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ + D  KK   + VH   VE   +R   +    +D + R  L  +HSATHLLH AL 
Sbjct: 517 GKVVVRDTAKKLGALHVHIGRVEGATIRVGQAARFVVDTERRDALRSHHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS + PD LRFD++H KP+++AE++ +ED+VN  I  N  + T+IM+ + 
Sbjct: 577 RRLGEHVTQKGSLVAPDRLRFDISHPKPLSAAEIRVVEDDVNREIRANAEITTQIMDPDS 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY + VRVVS+   + G     S  LCGGTH   TG+I    I+ E +
Sbjct: 637 AIEAGAMALFGEKYGEEVRVVSMGRREPGANRPFSVELCGGTHARRTGDIGFFKIIGEGA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773
           + +G+RRIEA+TGQ A  H+  QD+ +   A  LKV+  ++ GR++ + ++ R+L+  L 
Sbjct: 697 VASGVRRIEAVTGQAAFEHIEAQDDLVSGAAQLLKVTPADLPGRIQALLDDRRRLERDLA 756

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMS---HIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            A+RKL       +   + ++N +     ++ +V +K+LK ++D ++K++ SG++ L+ +
Sbjct: 757 DARRKLATGGGGAAAPAVVEINGVKWVGRLLEDVPAKDLKGMVDEVKKQLGSGVVALIAV 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + + KAS+++ VTEDL+ RF+AV L R  A  +GG GGGGRP MAQ+GGP+
Sbjct: 817 A-DGKASLVVGVTEDLVGRFDAVALVRAGAGAIGGKGGGGRPDMAQAGGPD 866


>gi|296448225|ref|ZP_06890121.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296254265|gb|EFH01396.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 897

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/900 (48%), Positives = 588/900 (65%), Gaps = 43/900 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IRTTFL+FF +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNQIRTTFLDFFSRNGHEKVASSPLVPLNDPTLMFTNAGMVQFKNVFTGFEKRHYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKC+RAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+++E  L
Sbjct: 61  ATSAQKCMRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEGAIELAWTLVSRELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY +D+EA+ LWKKI+G S D+IIRI ++DNFWSM + GPCGPCSEIF+DQG
Sbjct: 121 PRERLLVTVYHDDDEAYGLWKKIAGFSDDRIIRIASSDNFWSMGDLGPCGPCSEIFYDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R++E WNLVFMQ++Q    ER  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 ESVAGGPPGSPDEDGDRFLEFWNLVFMQYDQTAPGERVPLPRPSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             + +DIDLF+ L  A    TG+   G    +HRVI DHLR+S+FL+ADG+ P+NEGRGY
Sbjct: 241 VHSVFDIDLFRRLTGAVADATGVDAAGPQAASHRVIADHLRASAFLVADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  EPLM  L+ AL TEM  AYPEL +A+ LI +TL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAAEPLMHRLVGALVTEMAQAYPELTRAERLIRDTLLTEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL +LD   + L +   L+G+ AFKLYDT+G PLD+ +D L +RGL+ +D   F 
Sbjct: 361 QTLARGLAILDEETATLAQGGSLSGETAFKLYDTYGFPLDLTEDALRSRGLS-VDKAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR+ AR    G G   TE +WF+++E+ GAT+F+GYD                  
Sbjct: 420 TAMARQRAEARKAWAGSGETATESVWFAIEERVGATEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      IV A++  G        G +  V+ +QTPFYAE+GGQ+GD G     G+
Sbjct: 463 ------EKSEGIVVALLHDGAETFRLEPGARGAVLLNQTPFYAESGGQIGDIGEMRAKGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++T+ QKK  G+FVH  +VE G +   ++L L ID+  R  +  NHSATH+LH AL  
Sbjct: 517 RFRVTNTQKKLGGLFVHEGVVEEGAITPGLALELEIDHSRRNAVRANHSATHILHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +  D LRFD TH KP+T  E+  +E   N+++  N PV TR+M ++DA
Sbjct: 577 VLGDHVAQKGSLVASDRLRFDFTHPKPLTEEEVAEVERIANEVVQDNAPVDTRLMAQDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEY-------------EDGGVHSSALCGGTHVSSTGEIM 706
           I SGA AL G KY D VRVVS+               +     S  LCGGTHV  TG+I 
Sbjct: 637 IHSGARALFGEKYGDEVRVVSMGSLSTGQPSTDLAPTDQHHAFSVELCGGTHVRRTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ IVS+ ++ +G+RRIEA T + AR+ L+     L+ +A+ ++V       R+  + EE
Sbjct: 697 LVSIVSQGAVASGVRRIEAKTAEAARAQLVADSRALREVAALVRVPVDETPARLAALLEE 756

Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++L+   A+ K +L             +I  +   +  +S +D K+LKS++D  +K + 
Sbjct: 757 RKQLERELAEAKRKLAMGGGANGAAPVREIDGIKLFAKAVSGIDPKDLKSLVDEQKKALG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG++ +   S + KA +++ VT DL   +NAVDL R +++ LGG GGGGRP +AQ+GGP+
Sbjct: 817 SGVVAIASASADGKAGIVVGVTADLTTTYNAVDLVRAASEKLGGKGGGGRPDLAQAGGPD 876


>gi|163802982|ref|ZP_02196869.1| alanyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159173272|gb|EDP58100.1| alanyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 865

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 543/913 (59%), Gaps = 68/913 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LTK   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTKTLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +T+Y+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTIYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +Q       LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            E+E FG+TL+RG+ +L+  L ++       ++L+G+  FKLYDT+G P D+  D+   R
Sbjct: 361 IEEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARER 420

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
               ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS  
Sbjct: 421 EF-VIDEEGFEKAMEEQRQRAREA------GNFGTDYNAAIKVDAQTEFCGYTGTKGS-- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S V A+  +G  V    +G K  +V  +TPFYAE+GGQ 
Sbjct: 472 ---------------------SSVAAMFVEGNEVASLSAGDKAIIVLGETPFYAESGGQC 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +    ++ D QK    I  HH I+  G+L  +  +   +D + R  +S+NHS
Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGNAI-AHHGIMAEGVLAKDDEVATIVDAERRAAISLNHS 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS +  DGLRFD +H + +T+AELK +E  VN  + +N  
Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQVRRNHT 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L 
Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SE  I AGIRRIEA+TG+ A   +  Q  K +               + + + +E +
Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQTTKYEE-------KLAESAQKAKSLEKEIQ 737

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGII 825
           KLQ      K+          K+ D+N    +I      DSK L++++D ++ ++ SG+I
Sbjct: 738 KLQ-----DKMAAAESANIMGKVQDINGTKALIAALEGADSKNLRTMVDDIKNQVGSGVI 792

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  ++ + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +    
Sbjct: 793 LLANVNGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAAL 850

Query: 886 DQAIAGVASFLKK 898
            +A+  V  +L++
Sbjct: 851 PEAMKSVQPWLEE 863


>gi|254465088|ref|ZP_05078499.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206685996|gb|EDZ46478.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 883

 Score =  954 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/896 (48%), Positives = 577/896 (64%), Gaps = 39/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F KNGHE++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKNGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVETREYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEFD+
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKKM-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGTMVDLDMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLF+ LI+AS   T     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFRSLIEASANATNTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P+L  +MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGANDPVMHKLVPSLVQKMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD   + LGK ++L G+ AFKLYDT+G PLD+ QD L A+ +  +D   F+
Sbjct: 360 KTLDRGLKLLDEASAGLGKGDVLPGETAFKLYDTYGFPLDLTQDALRAKEIE-VDTGGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG     K++F + +  G T F+GY+                  
Sbjct: 419 AAMKAQKEQSRAGGIGLGEAADVKVYFDIVDAAGTTDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + AIV+ G  ++ A  G  V+++ +QTPFY E+GGQ+GD+G     G 
Sbjct: 462 ------EKAEGQIVAIVKDGAQLQSAAKGDTVQIILNQTPFYGESGGQVGDSGVLTVAGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD  KK EG+F+H A V  G +       + +D+  R ++  NHSATHLLH AL  
Sbjct: 516 AARITDT-KKVEGLFLHLAEVTEGEVAVGQGAAMEVDHDRRSKIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL  +   VND I QN PV TRIM  +DA
Sbjct: 575 ALGEHVAQKGSLNAADRLRFDFSHNKAMSAEELAKVGAEVNDFIRQNTPVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              GA AL G KY D VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRAATGKGHDGDTYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL  +  ++  +A+ LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAVEHLEREAGRMAEVAAALKAQPAEVLDRLKAMMDERKALQNE 754

Query: 774 --HAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K+++ +        +  DVN   F++  +  V  K+L+ ++D  ++ I SG+I+L+
Sbjct: 755 ISNLKQQIAMGGGSGGGAEAKDVNGKKFLAQALKGVSGKDLRGLIDKHKQNIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              ++ K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + 
Sbjct: 815 A-EEDGKVAVAAGVTDDLTGEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSG 869


>gi|120598090|ref|YP_962664.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|146293839|ref|YP_001184263.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|120558183|gb|ABM24110.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|145565529|gb|ABP76464.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32]
          Length = 892

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/909 (42%), Positives = 551/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 22  TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 81

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI   W  LT+   L +
Sbjct: 82  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 141

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 142 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +    E   LPK S+DTGMG+ER+A
Sbjct: 202 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 261

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 262 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK--SLRVIADHIRSCAFLVADGVMPSN 319

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 320 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 379

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 380 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 437

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 438 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 482

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 483 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 528

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 529 VANGIEFTVNDTQKYGQA-TGHQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 587

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 588 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 647

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 648 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 702

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 703 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 762

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 763 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 821

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 822 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 880

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 881 AQVLPWITE 889


>gi|323496144|ref|ZP_08101204.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323318888|gb|EGA71839.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 860

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/906 (41%), Positives = 537/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ ++ G +   N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEIVGHEDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAGEELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDAL-EGKELDGETVFKLYDTYGFPADLTNDVAREREFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNATIKTEEQTEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  I  +GE      +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------KSNVAEIFVEGEAAGSLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGVFKVEDTQKLGNAI-AHHGVLAEGVLAKGDDVEAVVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H + +T AELK +E  VN  +  N  + T 
Sbjct: 569 LHAALRKVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRHNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               + + + +E +KL+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEE-------KLAESASKAKSLEKEIQKLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A  +    +      +I  V  +   +   DSK L++++D ++ ++ SG++ML  +  
Sbjct: 737 KMAAAESANIMGK--AQEINGVKVLVAGMEGADSKNLRTMVDDIKNQMGSGVVMLANV-N 793

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + +    AI  V
Sbjct: 794 DGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPAAIQSV 852

Query: 893 ASFLKK 898
             +L++
Sbjct: 853 QPWLEE 858


>gi|152997630|ref|YP_001342465.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|205830138|sp|A6W1F1|SYA_MARMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150838554|gb|ABR72530.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 872

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/911 (42%), Positives = 545/911 (59%), Gaps = 54/911 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S +R +FL +F+   H+++ SSSL+P NDPTL+FTN+GMV FK++F G++   Y  
Sbjct: 1   MKS-SELRQSFLSYFESKQHQIVESSSLVPGNDPTLLFTNAGMVQFKDVFLGEDIRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT    L
Sbjct: 60  ATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYAWEFLTVVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L +TVY +D+EAF +W K  GL  +KIIRI  N       DNFW+M +TGPCGPC+
Sbjct: 120 PTEKLLVTVYADDDEAFDIWNKDIGLPVEKIIRIGDNKGGRYQSDNFWAMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           E+F+D GE I GG PGS  E+G+R+IEIWN+VFMQF +        LPK S+DTGMGLER
Sbjct: 180 EVFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSADGTMASLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQ   +NY+IDLF++LI+A+ QV G +       + RVI DH+RS SF+I DG++P
Sbjct: 240 IAAILQGVHSNYEIDLFQNLIKAAAQVVGTQDLSAQ--SLRVIADHIRSCSFMIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+ AL  EMG AYPEL + K  +   L 
Sbjct: 298 SNEGRGYVLRRIIRRAIRHGNKLGQKGVFFHKLVEALDVEMGEAYPELTKLKERVAAILL 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTLD+G+ +L+  +S LG  +++ G+  FKLYDT+G P D+  D+    GL  
Sbjct: 358 KEEEQFAKTLDQGMKILEEAISGLGDQKVIPGETVFKLYDTYGFPADLTNDVARENGLE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A++ QR+RAR+ S      +            GAT+F GY  L G       
Sbjct: 417 IDEAGFEVAMDAQRARARSASNFSMDMSGSVSVD------GATEFTGYSNLNG------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V+ I+ +GE V    +GQ   VV  +TPFY E+GGQ+GD G
Sbjct: 464 ----------------QSAVEQIIVEGESVSSLQAGQTGLVVLAETPFYGESGGQVGDQG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G     ++T+  K+ + + +HH  V  G L     +   +D   R   ++NHSATHL
Sbjct: 508 WLRGPAA-AKVTNTTKQGK-VHLHHVDVREGTLAVGDLVTTEVDRSLRNATALNHSATHL 565

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS + P+ LRFD +H + +T+AE + +ED VN+ +  N  VVT 
Sbjct: 566 LHEALRRVLGDHVQQKGSLVNPERLRFDFSHFEGMTAAEFEQVEDMVNEQVRLNHEVVTE 625

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ + A A GA AL G KY  +VRV+++    G  +S  LCGGTHVS TG+I L  IVS
Sbjct: 626 VMDIDSAKAKGAQALFGEKYESQVRVLTM----GADYSIELCGGTHVSRTGDIGLFKIVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I +G+RRIEA+TG+ A       +  L  +A   K S+   + +V  + ++ R LQ 
Sbjct: 682 EGGIASGVRRIEALTGKAAIDATRHTETALGKIAGLFKASKEAALDKVVALNDQARALQK 741

Query: 773 IH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
                K K+          +  D+N    ++++V   D K L+ ++D L+ K++S +I+L
Sbjct: 742 ELDVLKGKMAALAGADLASQAVDINGGKLLVAQVEVEDPKALRDLLDELKSKLESAVILL 801

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K S++  VT++L     A DL ++ A  +  G GGGRP MAQ+GG N      
Sbjct: 802 AAV-NDGKVSLIAGVTKELTKNVKAGDLIKMVAPYV-DGKGGGRPDMAQAGGNNPEGLSA 859

Query: 888 AIAGVASFLKK 898
           A+  V  ++ +
Sbjct: 860 ALELVPGWVAE 870


>gi|262372182|ref|ZP_06065461.1| alanyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262312207|gb|EEY93292.1| alanyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 884

 Score =  953 bits (2464), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/914 (43%), Positives = 533/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 7   FMTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EF 118
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AWD LT     
Sbjct: 67  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWDFLTNEQWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RLY+TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGP
Sbjct: 127 ALPKDRLYVTVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 187 CSEIFYDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 247 ERISAVLQHVNSNYEIDLFQHLLKAAANIIGIQDEGQ--PSLRVLADHARSCCFLIADGV 304

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE T
Sbjct: 305 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLVEVMGEAYPELASRKDVIEAT 364

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+  L+ L KD ++ G   FKLYDT+G P D+  DI   RG 
Sbjct: 365 LLREEEQFAKTLEQGLKLLEAELAQL-KDTVIPGATVFKLYDTYGFPTDLTADIARERGF 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + S+ +  G TQF GYD  +G     
Sbjct: 424 T-IDETGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATQG----- 471

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 472 ------------------QGQIVAIYKDGTQVDEINEGDEALIVLNQTPFYAESGGQIGD 513

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    ++ D  KK+ G FVH  IV  G L+   ++  T+    R   + NHSAT
Sbjct: 514 TGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTMGSLKATQNVEATVKADIRAATARNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV 
Sbjct: 573 HLLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLVNAEVIANTPVT 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY + VRV+S+    +    S  LCGG HV  TG+I L  
Sbjct: 633 TELLDIESAKAKGAMMLFGEKYGEEVRVLSMGSIIEEKNFSIELCGGIHVKRTGDIGLFK 692

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++++   LK  +   V +VE I E    
Sbjct: 693 ITSEGGVAAGVRRIEAVTGTKALEAVQKADSDIQTINGLLKAQKDQTVEKVEAIVETASS 752

Query: 770 LQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ    +   +L      DL     +IA    +   +  +D+K L+++ D+++ K++  +
Sbjct: 753 LQKQIEQLNQKLASFQAADLLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAV 812

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P   K
Sbjct: 813 IILAGVEGD-KVSLIASVAKQYAANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEK 870

Query: 885 ADQAIAGVASFLKK 898
            DQ  A + ++L++
Sbjct: 871 FDQVFAALPAWLEQ 884


>gi|88706721|ref|ZP_01104423.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699042|gb|EAQ96159.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 867

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/903 (41%), Positives = 536/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL  F+ +GH+ +PSSSL+P +DPTL+FTN+GM  FK++F G E   Y   
Sbjct: 1   MKTGEIREAFLAHFESHGHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAETRSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT E  L 
Sbjct: 61  VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRFAWDFLTVELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++TV+  D+EA K+W +  G  A++I R+   DNFW M +TGPCGP SE+F+D GE
Sbjct: 121 REKLWVTVHITDDEAEKIWIEDIGFPAERISRL-DEDNFWQMGDTGPCGPSSEVFYDHGE 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQ+ +    E   LPK S+DTGMGLER+A +LQ  
Sbjct: 180 DVPGGPPGSPDDDLDRYIEIWNLVFMQYNRSADGEMAPLPKPSVDTGMGLERIAAILQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF+ LIQ++ ++ G   +     + RVI DH+RSS+FLI DG+LP NEGR YV
Sbjct: 240 HSNYDIDLFQALIQSAAEMVGT--DDLKASSLRVIADHIRSSAFLIIDGVLPGNEGRSYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA+ +   LG        L+P+L  EMG  YPEL + +  IE+ +R E+E+F +
Sbjct: 298 LRRIMRRAIRHGNKLGADALFFHKLVPSLVAEMGDFYPELREQQTRIEDVIRGEEEQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+V+L+  L+ +    ++ GDV FKLYDT G P+D+  DI   R  + +D+  +  
Sbjct: 358 TLEQGMVILNEALAEMS-GTVIPGDVVFKLYDTFGFPVDLTNDIARERDFS-LDMEGYEA 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++ QR R++        G     +       G T F GYD   GS              
Sbjct: 416 AMQAQRERSKE------GGAFAVDYNRTLTLDGETLFTGYDESTGS-------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      V A+++ GE V    +G    V+ D+TPFY E+GGQ GD+G    +G+R
Sbjct: 456 ---------GTVVALLRDGEEVNALTAGDNGIVILDRTPFYGESGGQAGDSGYLRSNGLR 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L+I+D  K A G  +HH  V  G +    ++   ID   R++  +NHSATHLLH AL   
Sbjct: 507 LEISDTTK-ARGHHLHHGKVLEGSIALGDTVECEIDNAIRQKTRLNHSATHLLHAALRYE 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD ++ + +T  +L+++ED+VN  I  N+ V T+IM+ ++A 
Sbjct: 566 LGDHVAQKGSLVDGQRLRFDFSNPEAMTPEQLRAVEDSVNAQIRANVEVTTQIMSMDEAR 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+++        S  LCGGTHV  TG+I +  I+SE  + +G+
Sbjct: 626 EAGAMALFGEKYGDEVRVLTMGENG---FSVELCGGTHVERTGDIGMFRILSEGGLASGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A   +   D  L  +   L+ +  NV  +V  +  + R L+   A+ K +
Sbjct: 683 RRIEAVTGEHALREMRTVDHALGEVCELLRATTDNVRDKVAALRSQNRDLEKELARLKQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S   +  V  ++  +   D   L+ +MD  + K+ SG+I+L  +  + K
Sbjct: 743 LASSAGSDITASAIDVDGVKVLAAAVDGADPGALRGIMDQCKNKLGSGVILLAAV-NDDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  VT+DL +R  A DL R  A  LGG GG GRP MAQ GG        A+  V ++
Sbjct: 802 VALVAGVTKDLTERVRAGDLMREFAGRLGGKGG-GRPDMAQGGGTEPALLPAALEAVPAW 860

Query: 896 LKK 898
           + +
Sbjct: 861 VAE 863


>gi|205830244|sp|A1RHG5|SYA_SHESW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830245|sp|A4Y931|SYA_SHEPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/909 (42%), Positives = 551/909 (60%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI   W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +    E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+    N   + RVI DH+RS +FL+ADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNK--SLRVIADHIRSCAFLVADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  LS L  D  L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEAAMAEQRSRAQAA------GNFGADYNAALKIDAETAFCGYTELVG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI Q GE V    +G +  +V D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQA-TGHQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + P+ LRFD +H + +  AELK +E+ VN  I +N  +    M
Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE 
Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|260549963|ref|ZP_05824178.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260406955|gb|EEX00433.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 883

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/914 (43%), Positives = 533/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   LMTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +  
Sbjct: 65  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RLY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDRLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G+ I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 185 CSEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 245 ERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 302

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE T
Sbjct: 303 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARRDVIEAT 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG 
Sbjct: 363 LIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + S+ +  G TQF GY    G     
Sbjct: 422 I-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYINTTG----- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 470 ------------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +    ++ D  KK+ G FVH  IV  G L+   ++   +    R   + NHSAT
Sbjct: 512 TGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKANQNVEAIVKADIREATARNHSAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N PV 
Sbjct: 571 HLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTPVT 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  
Sbjct: 631 TELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFK 690

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    
Sbjct: 691 ITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSA 750

Query: 770 LQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ    +   +L      DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 751 LQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|307546333|ref|YP_003898812.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307218357|emb|CBV43627.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 868

 Score =  953 bits (2463), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/904 (42%), Positives = 544/904 (60%), Gaps = 46/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL +F++ GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++   Y  
Sbjct: 1   MKS-ADIRQAFLSYFEERGHSIVPSSSLVPDNDPTLLFTNAGMVPFKDVFLGRDPRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 60  ATSAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWNFLTEVLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+  D+EA ++WK   G+  ++  R+   DNFW M +TGPCGP SE+FFD G
Sbjct: 120 PREKLWVTVHVSDDEAERIWKDEVGIDPERFSRL-DEDNFWQMGDTGPCGPSSEVFFDHG 178

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS E +G+RYIE+WNLVFMQ+++        LPK SIDTGMGLER+A V+Q 
Sbjct: 179 PEVWGGPPGSPEEDGDRYIEVWNLVFMQYDRDAAGNMNPLPKPSIDTGMGLERIAAVMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF++L+ A+ + TG  ++  +  + RVI DH+RS +FL+ADG+LP+NEGRGY
Sbjct: 239 VHSNYEIDLFQNLLAAAAEATG--HDDTSAPSLRVIADHIRSCAFLVADGVLPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG        L+ AL  EMG AYPEL +A+  IE  L  E+E+F 
Sbjct: 297 VLRRIIRRAVRHGHKLGAQGCFFHKLVAALDAEMGEAYPELREARDQIERVLLKEEEQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ LL   L  L + + L G+  FKLYDT+G P D+  D+   RG++ +D   F 
Sbjct: 357 RTLEHGMGLLGEALDAL-EGDTLPGETVFKLYDTYGFPFDLTADVCRERGVS-LDEAGFE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + LE QR RARA S           + +  E  G T F GYD L                
Sbjct: 415 RELEAQRERARAASQ------FGVDYGAALELEGQTDFTGYDRLEDR------------- 455

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +++V  + +QG  +    + Q+  VV D+TPFY E+GGQ+GDTG    +G 
Sbjct: 456 ---------ATVVALVDEQGNALARLEAEQRGVVVLDRTPFYGESGGQVGDTGYLELEGG 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  + D QK+A G  +H   +  G L    S+   +D   R     NHSATHLLH AL  
Sbjct: 507 RFLVEDTQKQA-GHHLHQGRLLEGELEVGASVTPRVDPSLRAATVRNHSATHLLHQALRM 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +TP+ LRFD +H +P+T+ +L  +E  VN+ +  N P     M  ++A
Sbjct: 566 VLGDHVQQKGSLVTPERLRFDFSHFEPMTAEQLAEVERLVNEQVLANAPTRIEHMTLDEA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GAAAL   KY D VRV+++  +D    S  LCGGTHV+ +G+I   +IV+E+ I +G
Sbjct: 626 KEKGAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCCHIVAEAGIASG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG+ A ++   Q+ ++  +   LK     V  RV  + E  R+L+    + K 
Sbjct: 683 VRRIEAITGEGALAYFREQEARVARIGERLKAKPEQVEERVTSLVERNRELEKELERLKA 742

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           +L            H++  +  ++  +  V  KEL+ ++D L+ K+ SG+++L    ++ 
Sbjct: 743 KLASAAGSDMLGEAHEVKGIKVLAKRLEGVSGKELRGLLDQLKNKLGSGVVVLGVGDEQA 802

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K S++  VT+DL  R  A +L    A  + GG GGGRP MAQ+GG +      A+  V 
Sbjct: 803 GKVSLIAGVTDDLTGRIKAGELVNHVASQV-GGKGGGRPDMAQAGGSDVPALPGALDSVP 861

Query: 894 SFLK 897
            +++
Sbjct: 862 VWVE 865


>gi|167855110|ref|ZP_02477882.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853745|gb|EDS24987.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 853

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/890 (41%), Positives = 545/890 (61%), Gaps = 55/890 (6%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PSSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T+ Q+CVRAGGKHNDL+NVG 
Sbjct: 1   MPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNRATSSQRCVRAGGKHNDLENVGY 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLW 140
           T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +   L + +L++TVY+ D+EA+ +W
Sbjct: 61  TARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWLALPKEKLWVTVYETDDEAYDIW 120

Query: 141 KKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-E 192
            +  G+ A++I+RI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS+ E
Sbjct: 121 NREIGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEE 180

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           +G+R+IE+WN+VFMQF +Q       LPK S+DTGMGLER++ VLQ   +NY+ID+F+ L
Sbjct: 181 DGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGLERISAVLQHVNSNYEIDIFQAL 240

Query: 253 IQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           I+    +  +    N   + RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ + 
Sbjct: 241 IKEIASLLNVTDLDNK--SLRVIADHIRSCAYLIADGVMPSNEGRGYVLRRIIRRAVRHG 298

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
            +LG        L+P L   MG A   L Q +  I++ L++E+++F +TL+RGL LL+  
Sbjct: 299 NILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKALKAEEDQFARTLERGLALLEDA 358

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L+ + ++++L+G+VAFKLYDT+G PLD+  D+   RG+  ID  SF + ++ QR+RA+A 
Sbjct: 359 LAKV-ENKVLSGEVAFKLYDTYGFPLDLTADVCRERGIT-IDEASFEREMQAQRARAQAS 416

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S           +  + +  G+T+F GY++                           + V
Sbjct: 417 S------NFGTDYNYVIKVDGSTEFKGYEVTE-----------------------CEATV 447

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
            A+   G+ VE   SG+   VV D+T FY E+GGQ+GD+G    +    ++ D QK  + 
Sbjct: 448 VALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGDSGVIASEICNFEVNDTQKYGQ- 506

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +F H   +  G L     +   ++   R  +++NHSATHLLH AL  +LG HV+Q GS +
Sbjct: 507 VFGHIGQLASGTLSVGDKVKAEVNTTRRHAITLNHSATHLLHSALRQVLGDHVAQKGSLV 566

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           + + LRFD +  + I+ A+L+ IE  +N  I +N+ V T +M+ E A   GA AL G KY
Sbjct: 567 SENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVTTEVMDLESAKQKGAMALFGEKY 626

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            DRVRVV +        S  LCGGTHV  TGEI L  +VSE ++ AG+RRIEA+TG+ A 
Sbjct: 627 GDRVRVVDIT----AAFSVELCGGTHVKQTGEIGLFKVVSEGAVAAGVRRIEAVTGENAI 682

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLS 787
             L  Q + L   A  LK    ++V +++++ E+ +K++    + K +L  +        
Sbjct: 683 GLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKVEKELQQLKDKLAAQAGGELAKQ 742

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +I  VN +   +  VD+K L++++D L+ ++ S +I+      ++K ++++ VT+DL 
Sbjct: 743 AQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVIVFA-TQTDEKVNLIVGVTKDLT 801

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D+ NA +L  L A+ + GG GGGR  MA +GG       QA+    ++++
Sbjct: 802 DKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENITQALNVATNWIQ 850


>gi|39995259|ref|NP_951210.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|48428506|sp|P61701|SYA_GEOSL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39982021|gb|AAR33483.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|298504264|gb|ADI82987.1| alanyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 875

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/906 (41%), Positives = 541/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH ++PSS LIP NDPTL+F N+GM  FK+ F G EK  Y   
Sbjct: 1   MTGKEIRARFLKFFADRGHAVVPSSPLIPHNDPTLLFANAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFW+M +TGPCGPCSEIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHLQEGVPRERIYRFGEKDNFWAMGDTGPCGPCSEIFWDNGP 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER++TV+Q 
Sbjct: 181 EVGCGSPDCAVGCDCDRYMEIWNNVFMQFNRSADGVLTPLPKPSVDTGMGLERISTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DLF+ +I   E+++G +Y     + V+ RV+ DH+R+++FLI DG+LP+NEGR
Sbjct: 241 VKSNYDTDLFQGIIGHVEKLSGKRYRHSEKDDVSMRVMADHVRATTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP++  ++ A+   MG AYPEL++ +  I + +R+E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVICRMVEAVNAMMGDAYPELLEREEYIRKVIRAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L  +   ++ G+  F+LYDT G P D+  DI+ + G   ID 
Sbjct: 361 FAETLDRGLAILNEAVADLKNEGRTVIPGETLFRLYDTFGFPTDLTADIVRSEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR +AR H  G G     ++  +L  +   ++F GY+              
Sbjct: 420 DGFEACMERQREQAREHWKGSGEEGIAEVHKTLHSRGVRSRFTGYEA------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  +++ G  V EA +G +VE++ D TPFY E+GGQ+GDTG   
Sbjct: 467 ----------RTAYSPVTVLLKGGAEVAEATAGDRVEIITDATPFYGESGGQVGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T+  +    + VH   V  G +R   +  L +    R   + NH+ATHLL  
Sbjct: 517 TGSAHVEVTETLRPFPDLIVHRGTVVEGTIRQGDACDLKV-APGRDATARNHTATHLLQS 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS + PD LRFD TH   +T  E++ +E+ VN  I  N  V  R M 
Sbjct: 576 ALRQVLGDHVKQSGSLVGPDRLRFDFTHFAAMTPEEIRRVEEIVNSCIMANDDVHAREMA 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+  GA AL G KY D VRVV V     G  S  LCGGTHV + G+I    I+SE+ 
Sbjct: 636 LDEAMEIGATALFGEKYGDTVRVVRV-----GEVSMELCGGTHVHAAGDIGFFKILSEAG 690

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  H+   +++ K +A+ +K   G+ V R++ +    + +Q    
Sbjct: 691 IAAGVRRIEALTGMGALRHVQQLEDERKEIAALIKAEGGDNVERLQRLLTRQKDMQREIE 750

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            ++  V  ++ +    D K+L+ + D L+ ++ SG++ L G 
Sbjct: 751 TLESRLNAARSADLLADVREVNGVKVLATLAEVDDPKKLRELADTLKDRLGSGVVAL-GC 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            KE KA++L+ VT+DL  R  A DL R  + ++GG GG G+P +AQ+GG   +K  +A+ 
Sbjct: 810 VKEGKANLLVAVTKDLTGRVKAGDLIRQLSPIIGGSGG-GKPELAQAGGTLPDKLGEALG 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 KVCELV 874


>gi|254507377|ref|ZP_05119512.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16]
 gi|219549633|gb|EED26623.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16]
          Length = 860

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/906 (41%), Positives = 539/906 (59%), Gaps = 59/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KERLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G +   N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKAAAEVVGCEDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G       
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGYTGTQG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  I  +GE+ E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 466 ----------------KSNVAEIFVEGEVAESLSAGDKAIIILGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAIVDAERRASISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H + +T  ELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKPENLRFDFSHLEAVTPTELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               + + + +E +KL+ 
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEEQQAKYEE-------KLVESAQKAKSLEKEIQKLKD 736

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             A  +    +      +I     +   +   D+K L++++D ++ ++ SG+I+L  I+ 
Sbjct: 737 KMAAAESANIMGK--VQEINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILLANING 794

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +AI  V
Sbjct: 795 D-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPEAIKTV 852

Query: 893 ASFLKK 898
             +L++
Sbjct: 853 QPWLEE 858


>gi|205830482|sp|Q3SLA9|SYA_THIDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 872

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/911 (40%), Positives = 535/911 (58%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FL+FF   GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+   Y  
Sbjct: 1   MKSSA-IRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT    L
Sbjct: 60  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W    G+   +I+RI  N       DNFW+M +TGPCGPC+
Sbjct: 120 PSEKLWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 180 EIFYDHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+Q   +NY+IDLF+ LI A+ + T     GNN  + +VI DH+R+ SFLI DG++P
Sbjct: 240 ISAVMQHVHSNYEIDLFQALIAAAARETNTHDLGNN--SLKVIADHIRACSFLIVDGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        ++P L   MG AYPEL++A+  + + LR
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERF +T++ G+ +L+  L  L    + +G++AFKL+DT+G PLD+  DI    G+A 
Sbjct: 358 QEEERFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAGVA- 416

Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D  +F+ A+  Q+++AR A    LG+G        L     AT F GYD L        
Sbjct: 417 VDTAAFDAAMARQKAQARGAGKFKLGAG--------LDYAGEATTFHGYDTLA------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 462 ----------------REASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDR 505

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D  K    +F HH +V+ G L    S++  +D   R +   NHS TH
Sbjct: 506 GTLQSKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTH 565

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD     P+T+A+++ +E  VN  I  N P   
Sbjct: 566 LMHKALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQA 625

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R+M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  IV
Sbjct: 626 RVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVARTGDIGLFKIV 679

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AG+RR+EAITG  A ++L  ++++++  A+ LK     +  ++ +  +  R L+
Sbjct: 680 SESGVAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALE 739

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K +L              I  V  ++  +  +D+K L+   D L+ K++S   +
Sbjct: 740 KDLERLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKS-CAL 798

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           ++G   + K S++  VT D+  +  A +L  + A  + GG GGG+P +A +GG +     
Sbjct: 799 VLGTVADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALP 857

Query: 887 QAIAGVASFLK 897
            A+A V ++++
Sbjct: 858 AALASVEAWVQ 868


>gi|83955444|ref|ZP_00964075.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83840088|gb|EAP79263.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 886

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/896 (47%), Positives = 564/896 (62%), Gaps = 40/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  +W+L+TKE  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+TVY  D+EA ++WKK++GL  D+IIRI T+DNFW M  TGPCGPCSEIF+D G
Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL ++LI+AS   +    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  +MG AYPEL QA+ LI ETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G+ AFKLYDT+G P+D+ QD L  +    +D+  FN
Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G      +WF + EK G T F+GYD                  
Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATVWFDVAEKSGTTDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A++Q G  V E   G  V++  +QTPFYAE+GGQ+GDTG    D  
Sbjct: 463 ------ETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +TD +K A G+F+H   V  G ++T  + VL +D+  R  +  NHSATHLL+ AL  
Sbjct: 517 VVTVTDTRKTA-GVFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD +H+  +T+ +L ++E+ VN  I QN  V TRIM  +DA
Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHAMTTDQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  E G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +SS  +GIRRIEA+TG  A   L  Q+  L  +A+ LK S  +V  RV  + +E R L  
Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755

Query: 771 QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L ++    +      ++  + F++ +++ V  K+L +++D  + K+ SG ++
Sbjct: 756 EVAQLRRELAMSGGGDAGAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           L+    + KA+V   VT DL    +AVD+ +     LGG GGGGRP MAQ G  + 
Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKDV 870


>gi|153001637|ref|YP_001367318.1| alanyl-tRNA synthetase [Shewanella baltica OS185]
 gi|205830202|sp|A6WR16|SYA_SHEB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151366255|gb|ABS09255.1| alanyl-tRNA synthetase [Shewanella baltica OS185]
          Length = 874

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/909 (42%), Positives = 556/909 (61%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   T
Sbjct: 4   TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W  LT+   L +
Sbjct: 64  TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +T+Y  D+EAF++W K  G++A+ IIRI  N       DNFW M +TGPCGPC+EI
Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWN+VFMQ+ +Q   E   LPK S+DTGMG+ER+A
Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            ++Q   +NY+ID+F+ LI  + ++ G+        + RVI DH+RS +FLIADG++P+N
Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEK--SLRVIADHIRSCAFLIADGVMPSN 301

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +   LG TE     L+P+L   MG A   L + ++++E+ L++E
Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQVIVEKALKAE 361

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E+F +TL+RGL +LD  L+ L K + L+G+  FKLYDT+G P+D+  D+   R +  +D
Sbjct: 362 EEQFARTLERGLGILDTALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ EQRSRA+A       G     + +  +    T F GY  L G         
Sbjct: 420 EAGFEVAMAEQRSRAQAA------GNFGADYNAALKIDAETAFTGYTELAG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V AI   GE V    +G +  VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------QAKVTAIYLNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +GI   + D QK  +    H  ++  G L     +   +D + R +  +NHS THLLH
Sbjct: 511 VANGIEFTVNDTQKYGQA-TGHQGVLATGSLSVGQVIEAKVDKKLRHRTQLNHSVTHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN  I +N  + T  M
Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY+ +VRVV++     G  S  LCGGTHV  TG+I L  I SE+
Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+TG  A +++  Q  +L+  A+ LK    +VV +++   ++ ++L+   
Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L              +  VN +   +  V++  L+ + D L++K++S II+L G
Sbjct: 745 AQLKDKLAAAASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-G 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++E K +++  V+ DL+ +  A +L  + A  + GG GGGRP MAQ+GG      D A+
Sbjct: 804 TTQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV-GGKGGGRPDMAQAGGSQPENLDAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 AQVLPWITE 871


>gi|59711143|ref|YP_203919.1| alanyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|71657966|sp|Q5E7G5|SYA_VIBF1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|59479244|gb|AAW85031.1| alanyl-tRNA synthetase [Vibrio fischeri ES114]
          Length = 859

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/905 (41%), Positives = 535/905 (59%), Gaps = 58/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL +TVY+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 ADRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+ +L+  L +L +  +L+G+  FKLYDT+G P D+  D+   R L  I
Sbjct: 361 EEENFGRTLERGMAILNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERELT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+EEQR RAR        G     + ++ +    T F GYD            
Sbjct: 419 DEDGFEKAMEEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDSTE--------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+ ++GE V+   +G    ++ DQTPFYAE+GGQ GD G 
Sbjct: 464 --------------AKASVVALFREGEEVDALSAGDDAILILDQTPFYAESGGQCGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD  K    I  HH  +  G+L      +  +D   R  + +NHSATHLL
Sbjct: 510 ITVETGKFVVTDTHKIGNAI-GHHGKLVEGVLSKADHAMAQVDETRRAAIILNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD +H + + + EL+ +E  VN  I  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG+ A   +  Q +                  + +++ +E ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADK-------KLNEAASKAKQLEKEIQQLKDK 736

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A ++    +      +IA    +   +   ++K L+ ++D L+ +I SGIIML G   E
Sbjct: 737 LASQESASLINK--VQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIML-GNVSE 793

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT+DL+ +  A +L  + A+ + GG GGGRP MAQ+GG +      A+A V 
Sbjct: 794 GKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNALASVE 852

Query: 894 SFLKK 898
           ++L +
Sbjct: 853 AWLTE 857


>gi|85858185|ref|YP_460387.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|123515492|sp|Q2LPL7|SYA_SYNAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85721276|gb|ABC76219.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 878

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/903 (42%), Positives = 542/903 (60%), Gaps = 41/903 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S IR +FL FF+  GH  + SSSLIP +DPTL+FTN+GMV FKN F G E   Y    + 
Sbjct: 6   SEIRESFLRFFEGKGHTRVSSSSLIPKDDPTLLFTNAGMVQFKNAFLGLEDRGYSRAASC 65

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L + R
Sbjct: 66  QKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKREAIAWAWEYLTEVIQLPKER 125

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L++TV+ +D+EA+++W +   + AD+I+R+    NFW M ETGPCGPCSEI +DQGE   
Sbjct: 126 LWVTVFQDDDEAYRIWLEEMRIPADRIVRLGEKSNFWMMGETGPCGPCSEIIYDQGEGTG 185

Query: 185 GGLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P    E   +RY+EIWNLVF QF++        LPK +IDTGMGLER+A V Q   +
Sbjct: 186 CGRPDCHIECGCDRYLEIWNLVFTQFDRDEAGILTPLPKPNIDTGMGLERLAAVAQGVKS 245

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DLF  L+ A  + TG  Y  N  + V+ RVI DH RS +FLI DGILP+NEGRGYV
Sbjct: 246 NYDTDLFAPLLAAISRTTGKPYGKNEEDDVSLRVIADHARSVAFLIGDGILPSNEGRGYV 305

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + +LLG  +P +  L P +   M   YP+L+  K  I + + +E++RF +
Sbjct: 306 LRRILRRAARHGKLLGLNQPFLHELTPVVIEAMKETYPDLLDKKSYITKVILNEEQRFME 365

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD GL +L   +S L K     + GDV F+LYDT G P D+  DI+    L  ID   F
Sbjct: 366 TLDAGLKILQEEVSRLKKAGTTTIPGDVVFRLYDTFGFPTDLTADIVRRDNLT-IDEDGF 424

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A+E QR +AR    G G      ++  L  +  +T F+G++ +               
Sbjct: 425 QRAMEVQREKARESWKGSGEEAISALYQKLSTQGISTVFVGHEGV--------------- 469

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S + A++Q+ E+V+    G++ E++  +TPFY E GGQ+GDTG   G+ 
Sbjct: 470 -------CNAQSQITALLQKEELVDSLAEGEEGELIVAETPFYGEIGGQIGDTGTIEGED 522

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D ++  + +  H   V +G  R   S+ L +    RR    NHSATHLL  A+ 
Sbjct: 523 FVFEVLDTRRPLDNLISHVGRVIKGRGRKGDSVNLIVAEDKRRATEANHSATHLLQAAMK 582

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           T++G+H+ Q+GS +T + LRFD TH   I   EL+ IE+  N +I +NLPVVTR++  E+
Sbjct: 583 TVMGNHIKQSGSLVTAERLRFDFTHFSKIEENELEQIENLANAVIRRNLPVVTRVLPLEE 642

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ +GA A+   KY ++VRVV +     G  S  LCGGTH+  TG+I  + I+ ES+I A
Sbjct: 643 AMKTGATAVFDEKYGEKVRVVRM-----GDFSMELCGGTHIQRTGDIGFIKIIHESAIAA 697

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ A +H    + +LK  A  LKVS  ++  RVE++ +  +  +      K
Sbjct: 698 GVRRIEAVTGREAVNHARRVENELKKAAKLLKVSPFDLGERVEKLIKTQKDQEKEIETLK 757

Query: 779 LQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L  +D         +I  +  ++  ++  D+K L+   D L+ ++QSGII L+G   E
Sbjct: 758 GRLAAKDSADLLSQAREIRGIRVLTAAVNAPDAKTLRDFGDKLRDRLQSGII-LIGSKAE 816

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA +L +VT+DL DR++A  + R  A V+ GG GGGRP MAQ+GGP     ++A+  + 
Sbjct: 817 GKAMLLCLVTKDLTDRYSAGSIIREIAPVV-GGKGGGRPDMAQAGGPEPENLERALKHLE 875

Query: 894 SFL 896
             +
Sbjct: 876 EMI 878


>gi|330720929|gb|EGG99105.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 865

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 554/904 (61%), Gaps = 47/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+F  + GHE L SSSL+P NDPTL+FTN+GMV FK +F G E   Y  
Sbjct: 1   MKS-SDIRNAFLDFLVQQGHERLASSSLVPGNDPTLLFTNAGMVQFKELFLGNETRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L
Sbjct: 60  ATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKVEAIKFAWTFLTEVMGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TVY+ED+EA  +W K  G+SA++  R+   DNFWSM +TGPCGPC+EIF+D G
Sbjct: 120 PEEKLWVTVYEEDDEAADIWLKDMGVSAERFSRLGKKDNFWSMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+RYIEIWNLVFMQFE+        LPK S+DTGMGLER+A V+Q 
Sbjct: 180 EEVAGGPPGSPDEDGDRYIEIWNLVFMQFERAADGTMTPLPKPSVDTGMGLERIAAVMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNY+IDLF+ L++ + +V G+    N   + RVI DH+RS SFL++DG++P+N+GRGY
Sbjct: 240 VHNNYEIDLFQTLLKRAAEVVGVSDTSN--TSLRVIADHIRSCSFLVSDGVIPSNDGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     ++ AL  EMG AYPEL+  +  IE+ L  E+E+F 
Sbjct: 298 VLRRIIRRAIRHGHKLGMKDAFFHKIVSALVDEMGEAYPELVTRQAQIEQVLAKEEEQFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+G+ + +  LS L  +E + G+  F+LYDT+G P+D+  DI   R L   DI  F 
Sbjct: 358 KTLDQGMQIFERDLSELKGNE-IPGETIFRLYDTYGFPVDLTADIARERNLIM-DIAGFE 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA++EQR RARA S        + ++       G T F GYDLL                
Sbjct: 416 QAMQEQRERARAASSFDVDMRADVVFE------GETDFCGYDLL---------------- 453

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V++G+  E  + G    VV D TPFYAE+GGQ+GD G    D  
Sbjct: 454 -------TEQCQISALVKEGDTAESLIEGDTGVVVLDHTPFYAESGGQVGDVGTLQTDEA 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++T+  K+A G  +H  +VERG       LV  +D + R+  ++NHSA+HLLH AL  
Sbjct: 507 VFRVTNTVKQA-GTHLHQGVVERGSFTVGTKLVAEVDTRKRQATALNHSASHLLHAALRD 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS ++P+ LRFD +H + +T+ +L +IE  VND I  N  V T +M  EDA
Sbjct: 566 VLGEHVAQKGSLVSPERLRFDFSHFEAVTAQQLSAIEAMVNDKIQANSEVGTELMALEDA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + SG  AL G KY+D VRV+S+        S  LCGGTHV+ TG+I +  I+SES + AG
Sbjct: 626 MNSGVTALFGEKYSDEVRVLSM----ADGFSVELCGGTHVNRTGDIAVFKIISESGVAAG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG  A ++    ++ L  +A  LK +    V +V+ +  + R+L+   A  K 
Sbjct: 682 VRRIEAVTGNAALTYYQNLEQDLTEIAGVLKSAPEQTVEKVQLLASKNRQLEKELAALKA 741

Query: 780 QLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             ++  V  ++H    VD K L S MD L+ K+ + +I+L   +K  
Sbjct: 742 KLVTSSGRDLASEAVELNGVKVLAHAFEGVDGKTLLSTMDQLKSKLGTAVIVLA-TAKGD 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT+D  DR  A +L  + A  +GG GG GRP MAQ+GG        A+A V  
Sbjct: 801 KVSLVAGVTKDATDRVKAGELVNMVAGQVGGKGG-GRPDMAQAGGNQPEAIPAALASVVP 859

Query: 895 FLKK 898
           +L++
Sbjct: 860 WLEQ 863


>gi|302389912|ref|YP_003825733.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302200540|gb|ADL08110.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 880

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/910 (41%), Positives = 550/910 (60%), Gaps = 47/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  FL FF+  GH  +PSSSL+P NDPTL+FTN+GM  FK++F G +K  +  
Sbjct: 1   MMTSSEIREKFLSFFESKGHVRVPSSSLVPYNDPTLLFTNAGMNQFKDVFLGLKKLPFTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLD+VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 61  ATTAQKCVRAGGKHNDLDSVGRTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTEVLQL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++++Y+ D+EAF LW++++ +  +KIIR+   DNFW+M +TGPCGPCSEI+ D+G
Sbjct: 121 PKERLWVSIYENDDEAFYLWQEVANIPPEKIIRLGEKDNFWAMGDTGPCGPCSEIYIDRG 180

Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           E      P       + +R+ E+WNLVFMQ+ +        LP+ SIDTGMGLER+ATV+
Sbjct: 181 EEHRCNSPECKIGVCDCDRWRELWNLVFMQYNRDEHGNLTPLPRPSIDTGMGLERIATVM 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +NYD DL + +I   E +TG KY G+      RVI DH+R+ +FLI+DG+LP NEG
Sbjct: 241 QNVYSNYDTDLLRPIIAFVENMTGKKYYGDERGFPFRVIADHIRAITFLISDGVLPGNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           R YVLRRI+RRA  + + L    P +  ++P + + MG AYPE+ + +  I+   + E+E
Sbjct: 301 RSYVLRRILRRAARFGKELDLNRPFLYKIVPVVVSLMGDAYPEIKKNQDYIQRVTKFEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL LL   ++ L     +++ G++AF LYDT+G PLD+ +D+   +G   ID
Sbjct: 361 RFHETLNDGLKLLFEGMAELEEKNQKVIPGEMAFMLYDTYGFPLDLTEDVAREKGF-NID 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F + +E QR +A+A              + +      T F+GYD L           
Sbjct: 420 REAFEELMERQRKKAKAARK---EEYPVNELYEILAPMEPTIFVGYDCL----------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          + V+ I+   E V EA     ++ +V D+TPFY EAGGQ+GDTG 
Sbjct: 466 ------------STEAQVELIISGKEPVVEADEKAGEIILVLDRTPFYGEAGGQVGDTGI 513

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ D Q+  +G   H   VE+G +R +  +  ++D   RR ++ NHSATHLL
Sbjct: 514 IENENFTFRVRDTQRTPDGKIYHIGKVEKGFIRLKERVTASVDEARRRDIARNHSATHLL 573

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  D LRFD +H   +T  E+K IED VN  I  +LPVV   
Sbjct: 574 HRALKDVLGEHVNQAGSLVAHDRLRFDFSHFAALTEDEIKKIEDLVNKAILDDLPVVVEE 633

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A  +GA AL G KY ++VR+VS+     G +S  LCGGTHVSST +I L  I+SE
Sbjct: 634 TTVEEAQKAGAIALFGEKYGEKVRMVSM-----GNYSKELCGGTHVSSTSKIGLFKIISE 688

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           SS+ AG+RRIEA+TG    ++       +  L S LK    ++  +VEE++E  ++ +  
Sbjct: 689 SSVGAGVRRIEAVTGWNLLNYTRENLAIISDLVSLLKSKPQDLTAKVEELFETIKRNERQ 748

Query: 774 HAKRKLQL---NVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + +L    VE+++  KI   D+N +S  + +    +L+++ D L++KI+SGI++L 
Sbjct: 749 VESLRQRLINTRVEEIAAGKILLGDINVISAKVDDASMDDLRNISDVLRQKIKSGIVVLG 808

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             S + +  ++  VT+DL+++ ++A  + + +A+ + GG GGGRP  AQ+GG   +K +Q
Sbjct: 809 STSGD-RVFLVCSVTKDLVEKGYHAGKIVKQAAE-VAGGSGGGRPDFAQAGGKYPDKLEQ 866

Query: 888 AIAGVASFLK 897
           A+      +K
Sbjct: 867 ALKVAVDVIK 876


>gi|118581577|ref|YP_902827.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|205830173|sp|A1ATU9|SYA_PELPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118504287|gb|ABL00770.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
          Length = 878

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/892 (42%), Positives = 539/892 (60%), Gaps = 42/892 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF + GH ++PSS +IP NDPTLMF N+GM  FK+ F G EK  Y   
Sbjct: 1   MTGSEIRRRFLTFFAERGHTIVPSSGIIPKNDPTLMFANAGMNQFKDCFLGMEKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT++  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTRDLKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY++VY +D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPCSEIF+DQGE
Sbjct: 121 KNRLYVSVYTDDQEAADIWHQQEGVPLERIFRFGEKDNFWSMGDTGPCGPCSEIFYDQGE 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+EIWN VFMQF++        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 AAGCGSPDCTVGCDCDRYMEIWNNVFMQFDRSTDGVLTPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+++G  Y  +  + V+ RVI DH R+ +FLI DG LP+NEGR
Sbjct: 241 VTSNYDTDLIQGIIRHVERLSGKTYGKDERDDVSMRVIADHARAVTFLICDGALPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  +P++ H++ A+   MG+AYPEL++ +  I++ + +E++R
Sbjct: 301 GYVLRRIMRRAARHAKMLGLADPMLCHMVDAVRDMMGAAYPELVEREEYIKKVILAEEQR 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ +      ++ GDV F+LYDT+G P+D+  DI+ + G   ID 
Sbjct: 361 FAETLDRGLAMLNDEVARMRAAGSTVIPGDVLFRLYDTYGFPIDLTADIVESEGFT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F Q +E QR +AR H  G G+    +++  L  +    +F+GYD L            
Sbjct: 420 AGFEQCMERQREQAREHWKGSGAEGIGRVYKELYSRGIRGEFVGYDGL------------ 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V AI++ G  VE A +G+ +E+V + TPFY E+GGQ GD G   
Sbjct: 468 -----------SALSPVLAIIRDGVEVESATAGETIELVTESTPFYGESGGQKGDCGSIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                L+++   +    + VHHA V  GI+R      L +    R   + NH+ATHLL  
Sbjct: 517 TGNSHLEVSGASRPYSDLIVHHATVREGIIRKGDGADLRVSRPERSATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS ++PD LRFD  H   +T+ E++ +E  VN  +  N PVV   M+
Sbjct: 577 ALRRVLGEHVKQAGSLVSPDRLRFDFIHFTAMTTEEIRRVETLVNGFVMDNQPVVITQMD 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              AI +GA AL   KY D VRVV       G  S  LCGGTHV +TGEI L  I++E+ 
Sbjct: 637 MASAIEAGATALFDEKYGDNVRVVR-----AGEVSMELCGGTHVRATGEIGLFKIITETG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A S +   +++ ++LA  LK   GN+  R+E++    R++Q    
Sbjct: 692 IAAGVRRIEAQTGGGALSFVRQMEDEQRALAGLLKAEGGNLPERLEKLLARQREMQREIE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            ++  +  ++  +   D K L+ + D L+++I  G+I+L G 
Sbjct: 752 SLQGKLNAAASGDLLSGVEEVGGIKLLAAEVRVEDVKALRDLSDTLKERIGQGVIVL-GA 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +   KA++L+ VT +L     A DL +  A ++ GG GGG+P +AQ+GG   
Sbjct: 811 AIGGKANLLVAVTRELSGTVKAGDLVKKLAPLV-GGSGGGKPELAQAGGSRP 861


>gi|144899258|emb|CAM76122.1| Alanyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 881

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/904 (50%), Positives = 601/904 (66%), Gaps = 33/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   ++IR  FL++F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MQTANTIRRAFLDYFAKNGHEVVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI LAW+L+TKEF L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIALAWNLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY +D+EAF +WKK++G S D+IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 AKDKLLVTVYHDDDEAFNIWKKVAGFSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  ++G+R+IEIWNLVFMQFEQ +KQ R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKIAGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKQTRLPLPKPSIDTGMGLERLAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +NYD+DL + LI+AS   +    +G   V+HRV+ DHLRSS FLIADG+LP+NEGRGY
Sbjct: 241 QHDNYDVDLLRALIEASAHESNTDADGPYKVSHRVVADHLRSSCFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A L+G TEPL+  L PAL  +MG AYPEL +A  LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLWRLFPALAKQMGEAYPELGRAGALITETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLD+GL LLD  L+HL     L G+VAFKLYDT+G PLD+ +D L A+G+ G+D   F 
Sbjct: 361 ATLDKGLKLLDDELTHLVPGAKLAGEVAFKLYDTYGFPLDLTEDALKAKGI-GVDTDGFA 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ AR    G G   TE +WF +KEK GA++F+GYD +                
Sbjct: 420 TAMDRQRAEARKAWSGSGEAATETLWFEIKEKTGASEFLGYDAI---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                  G    + A+V+ G+ VE    G +V VV +QTPFY E+GGQ+GDTG     G 
Sbjct: 464 -------GAEGQIVALVEGGKAVEAVHPGHEVMVVANQTPFYGESGGQMGDTGIISVAGG 516

Query: 540 --RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R+ +TD  KK   + VH   VE G +         +D   R     +HSATHLLH AL
Sbjct: 517 KARIVVTDTLKKLGDLIVHVGKVEGGPVAVGEDAHFAVDETRRDATRGHHSATHLLHQAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG HV+Q GS + PD LRFD  H K +++ E++ +E  VN  I +N  VVT++M+ +
Sbjct: 577 RDALGEHVTQKGSQVGPDRLRFDFAHPKGLSTDEIRLVEAEVNRQIRKNRAVVTKLMSPD 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           DAI +GA AL G KY + VRVVS+  +D      S  LCGGTHV   G+I    I+SES+
Sbjct: 637 DAIEAGAMALFGEKYGEEVRVVSMGGDDSRPNPFSVELCGGTHVRRVGDIGGFKILSESA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RR+EA+TG    +    Q+E L   A  LK +   +  R+ ++ E+ RKL+   +
Sbjct: 697 VAAGVRRVEAVTGPAFLAWANEQEELLARAAQALKAAPAELPARIAQLVEDRRKLERELS 756

Query: 776 KRKLQLNVEDLSCHKIADVNFMSH---IISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + + QL     +      +N +++   ++  V +K+LK + D ++K+I SG+++LV  + 
Sbjct: 757 ETRKQLATGGGAGAATTQINGITYAGRVLDGVPAKDLKGMADEIKKQIGSGVVVLVS-ND 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             KASV++ VT+DL  + +AVDL R+ ++ +GG GGGGRP MAQ+GGP+ +KA  A+  +
Sbjct: 816 GGKASVVVAVTDDLTAKHSAVDLVRIGSEAVGGKGGGGRPDMAQAGGPDADKAQDAVDKI 875

Query: 893 ASFL 896
           A+ L
Sbjct: 876 AAAL 879


>gi|89054478|ref|YP_509929.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|122498736|sp|Q28QV8|SYA_JANSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88864027|gb|ABD54904.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1]
          Length = 884

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/893 (48%), Positives = 580/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL++F + GH ++PSS L+P NDPTLMF NSGMV FKN+FTG EK  Y  
Sbjct: 1   MTSLNDIRSTFLDYFGRQGHAVVPSSPLVPRNDPTLMFVNSGMVQFKNLFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+TK+F L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRYAWELITKDFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKARLYVTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PGS+E +G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 EHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFADGTMVPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D  + L++AS   +    +G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDTMRALMEASAHASSTDLDGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL ++MG AY EL QA+ LI ETL+ E+ERF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMYRLVPALVSQMGQAYSELGQAQALITETLKLEEERFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ L +D  L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDEVAKLPEDGNLPGAAAFKLYDTYGFPLDLTQDALREQGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + EK G T+F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWSGSGDAADATIWFDIAEKNGVTEFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G  V++  S Q V  V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 462 ------EVAEGQVLALVVDGARVDKVASNQDVIFVTNQTPFYAESGGQVGDSGTIRTETG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L +T+ +K   G+F+H   V  G ++      L++D++ RR +  NHSATHLL+ AL  
Sbjct: 516 VLHVTETRK-VAGVFLHVGQVTEGTIKVGQGASLSVDHERRRYICANHSATHLLNEALRW 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            +G  V Q GS  + D LRFD +H+KP+T+ EL  +E  VND+I +N  V TR+M  +DA
Sbjct: 575 AIGDSVVQRGSLNSRDRLRFDFSHNKPMTADELAQVEAEVNDLITRNTAVETRVMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+ +        D   +S  LCGGTHV  TG+I    I+S
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGHHAGSGKGLDKDTYSIELCGGTHVKRTGDIGPFVILS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+  AG+RRIEA+T Q A  +L  Q+E++  LA+ L     +V+ RV+ + ++ +KL+ 
Sbjct: 695 ESASAAGVRRIEALTNQTASFYLSEQNERMGQLAAELNTQAADVLDRVKALKDDRKKLEN 754

Query: 773 IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A+ + +L +           +  VNF +  +S V  K+L  ++D  + ++ SG ++L+
Sbjct: 755 EVAQLRRELAMAGGTSAPEAASVNGVNFHAQALSGVTGKDLAGIVDEHKARLGSGAVLLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +  K A     VTEDL DR +AVDL R +   LGG GGGGRP  AQ GG +
Sbjct: 815 ADAGGKAAV-AAGVTEDLTDRLSAVDLVRAAVAELGGKGGGGRPDFAQGGGKD 866


>gi|302189037|ref|ZP_07265710.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 874

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 543/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERDL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G   R  ++D  K   G F+HH +V  G L     +   +  + R   ++NHSAT
Sbjct: 507 SGFLQGGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGTQVETQVSDEVRNATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHARRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|2500961|sp|Q56273|SYA_THIFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1263913|emb|CAA64818.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans]
          Length = 877

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/904 (43%), Positives = 533/904 (58%), Gaps = 39/904 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +IR  FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E   Y+  
Sbjct: 1   MQAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L 
Sbjct: 61  VSSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITVY+ED+EA  +W    G+   ++ R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PEKLWITVYEEDDEAADIWMNEIGVDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            IPGG PGS  E+G+RYIEIWNLVFMQF++ +      LPK S+DTGMGLER+A VLQ  
Sbjct: 181 HIPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            NNYD DLFK LI A+  ++G  Y  +    ++ RV+ DH+R+ SFLI DG+LPANEGRG
Sbjct: 241 HNNYDTDLFKPLIAAAAAISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + R LG        L+  L  EMGSA+PEL +A+  +E  L  E+ RF
Sbjct: 301 YVLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRF 360

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RGL LL+  ++ L     + G++ F+L DT G P+D+  DI   R L   D+  +
Sbjct: 361 RETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLIM-DMEGY 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+ ++RS       G G   TE+++  L  +   T+F GY                  
Sbjct: 420 EAAMADERSPLPCRLGGSGEVKTERVYHDLAMRLPVTEFTGYSTCAD------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V A+++ GE V    +G    V+ D+TPFY E+GGQ GD G    + 
Sbjct: 467 ----------EGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSND 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +TD QK    + VH   VE G L+    +V ++D   RR  + +HSATHLLH AL 
Sbjct: 517 ALFAVTDTQKPMGHLHVHLGRVESGRLQIGDMVVASVDEVARRATAAHHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILGSHV Q GS + P+ LRFD +H +P+T+A+L+ IE  VN  I  N+   TRI+   +
Sbjct: 577 NILGSHVQQKGSLVNPERLRFDFSHPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV +     G  S  LCGGTHV + G+I +  I+SES + A
Sbjct: 637 AQALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG  A   +   +E+L++ A  LKV+   +  R+ +  E  R+L+    K K
Sbjct: 692 GIRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVK 751

Query: 779 LQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
               V            +  V  +   +  +D K L+  +D L+ ++  G+I+L G+ +E
Sbjct: 752 RDEAVRAGAGLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVERE 811

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +++  V + L  R +A +L    A+ L GG GGGRP +AQ+G  N    D A+    
Sbjct: 812 -KVALIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGNPAALDAALNAAR 869

Query: 894 SFLK 897
            ++K
Sbjct: 870 DWVK 873


>gi|254805364|ref|YP_003083585.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668906|emb|CBA07085.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 885

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/911 (41%), Positives = 533/911 (58%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR+RARA         + K    L      T+F GY   +      
Sbjct: 428 E-LDEAGFEREMEAQRTRARAAQ-------SFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G +  +V D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVNELNEGDEGAIVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 577 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 870 PAVLDSVKDWV 880


>gi|66046785|ref|YP_236626.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|63257492|gb|AAY38588.1| Alanyl-tRNA synthetase, class IIc [Pseudomonas syringae pv.
           syringae B728a]
          Length = 899

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 26  MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 84

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 85  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 144

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 145 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 204

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 205 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 264

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 265 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 322

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 323 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 382

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 383 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 441

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 442 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 490

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 491 -------------------ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGD 531

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 532 SGFLQAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 590

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+
Sbjct: 591 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVM 650

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 651 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 706

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 707 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLL 766

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 767 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 826

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 827 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 884

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 885 DSALALAVPFVEQ 897


>gi|330981768|gb|EGH79871.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 874

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLQAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|149202694|ref|ZP_01879666.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149143976|gb|EDM32010.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 893

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/899 (48%), Positives = 583/899 (64%), Gaps = 41/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 3   MPTLNEIRSTFLSFFERNDHRVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHRDYVR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AWDLLTK+F +
Sbjct: 63  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA  +WKK +GLS D+IIRI T+DNFWSM  TGPCGPC+EIF+D G
Sbjct: 123 DKSKLLVTVYHTDDEAANIWKKYAGLSDDRIIRIKTDDNFWSMGSTGPCGPCTEIFYDHG 182

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+ E+G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 183 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGSMRALDMQSIDTGMGLERIGALLQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 243 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG A+PEL +A+ +IEETL+ E+ RF 
Sbjct: 303 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVAQMGQAFPELGRAQAMIEETLKLEETRFK 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  LS L +   L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 363 QTLERGLRLLDDELSDLAEGAALPGVTAFKLYDTYGFPLDLTQDALREKG-RDVDTAGFD 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + E+ G T F+GYD  R               
Sbjct: 422 AAMAEQKAKARAAWAGTGEAADQAVWFDIAEEKGTTDFLGYDTER--------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G  V  A  G+ V++V +QTPFYAE+GGQ+GD+G    +  
Sbjct: 467 --------AEGQIVALVRDGVRVSAATMGESVQIVLNQTPFYAESGGQVGDSGLLKTETG 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++++TD  KK  G+FVH A+VE G ++   +  L + +  R  +  NHSATHLLH AL  
Sbjct: 519 QVRVTDT-KKVAGVFVHIAVVETGEIKAGQAAQLEVSHARRSAIRANHSATHLLHEALRG 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++AEL+ +E  VND I QN PV TRIM  +DA
Sbjct: 578 ALGEHVAQRGSLNAEDRLRFDFSHAKALSAAELERVEREVNDYIRQNAPVETRIMAPDDA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I +   ++
Sbjct: 638 RALGAQALFGEKYGDEVRVVSMGQAEGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALA 697

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES+  AG+RRIEA+TG  A  +L GQ  +L  +AS LK    +V  RV+ + EE R L  
Sbjct: 698 ESASSAGVRRIEALTGAAAFDYLSGQAARLGQVASDLKARPEDVAERVKVLMEERRALAN 757

Query: 771 QLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L ++            ++  V  ++ +++ V  K+L  ++D  + ++ SG +
Sbjct: 758 EVAQLRRELAMSGGAGQGGGAEAREVGGVKLIAQVLTGVQGKDLPPLIDEHKARLGSGAV 817

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L+      K +V   VTEDL DR +AV++ R +   LGG GGGGR  MAQ GG + + 
Sbjct: 818 LLIA-DTGGKVAVAAGVTEDLTDRISAVEMVRAAVAELGGKGGGGRADMAQGGGTSMDG 875


>gi|34497059|ref|NP_901274.1| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|41018171|sp|Q7NXM2|SYA_CHRVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34330326|gb|AAQ59280.2| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 877

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/914 (42%), Positives = 532/914 (58%), Gaps = 60/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF   GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK  Y   
Sbjct: 1   MKTSEIRKKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +   
Sbjct: 61  TTSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWEFLTGEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY  D+EA+ +W +  GL ADKI+RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLMVTVYATDDEAYDIWHQTVGLPADKIVRIGDNKGAPYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIFFD G  + GG PGS  E+G+R++EIWN VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFFDHGPSVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDEAGTLHPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++TVLQ   +NY+ D    L++A+ + TG++Y   ++ + +VI DH+R+ SF++ADGIL
Sbjct: 241 RLSTVLQHVKSNYETDALACLVRAAARETGVEY-SQDVPSLKVIADHIRACSFMVADGIL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI RRA+ +   LG        ++  L  EMG AYPEL + +  IE+ L
Sbjct: 300 PSNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVAEMGEAYPELREKQAHIEDAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+ +F +TL+ G+ L+D  L   G    L+GD  FKLYDT G P+D+  DI   RG+ 
Sbjct: 360 RAEEIKFAETLEIGMGLVDSALE--GGKTALDGDTIFKLYDTFGFPVDLTADICRERGIH 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D+  F +A+E QR R RA S    SG        +      T+F GYD          
Sbjct: 418 A-DLEGFERAMEAQRERGRAGSNFKMSGK-------IAYDGEDTRFHGYD---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         + V + V A+ +  + V+   +G +  VV D T FYAE GGQ+GD 
Sbjct: 460 -------------KSSVEAKVLALYKGTDPVDSLSAGDEGIVVLDGTAFYAEGGGQVGDV 506

Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G     G       + D QK     F H   + RG L+   ++  TID   R+  + NHS
Sbjct: 507 GEISAAGGIAALFDVADTQKIQGAAFGHKGKLARGALKVGDAVTATIDLHQRQASARNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV Q GS + P+  RFD  H + +T+A++  +E  VN +IA N  
Sbjct: 567 ATHLLHAALRHVLGGHVVQKGSLVNPERTRFDFAHGEAVTAAQIAELERVVNHVIAANYE 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +M+ E A  SGA  L G KY D VRV+++     G  S+ LCGGTHV  TG+I L 
Sbjct: 627 VKAELMSMEAAQKSGAMMLFGEKYGDEVRVLTM-----GDFSAELCGGTHVKRTGDIGLF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            IV+E  + AG+RRIEA+TG+ A +++  QD  +K  A+ LK      V+ ++  + +  
Sbjct: 682 KIVAEGGVAAGVRRIEAVTGEGALAYIQAQDALIKEAAAALKAQTSDEVLAKIAALQDSA 741

Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L+   AK K QL          +   I  V  ++  +   D+  L+  +D L+ K+ S
Sbjct: 742 KALEKELAKLKGQLASSAGDSLADAAADINGVKVLAAELPGADNTALRETLDKLKDKLGS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L     + K +++  VT DL  +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 802 AAIVLAA-KGDGKVALVAGVTADLTGKLKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQP 859

Query: 883 NKADQAIAGVASFL 896
              D A+ GV +++
Sbjct: 860 ENLDAALNGVQAWV 873


>gi|261253947|ref|ZP_05946520.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937338|gb|EEX93327.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 860

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/909 (42%), Positives = 540/909 (59%), Gaps = 65/909 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W +  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNQKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G +   N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHEDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +G+      
Sbjct: 419 IDEAGFEKAMEEQRQRAREA------GQFGTDYNATIKTEAETEFCGYAGTQGN------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V  I  +GE  E   +G K  ++  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SNVAEIFVEGEAAESLSAGDKAIIILSETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAVVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD ++ + +T AELK +E  VN  + +N  + T 
Sbjct: 569 LHAALRQVLGEHVAQKGSLVKPENLRFDFSNLEAVTPAELKEVERLVNAQVRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q  K +               + + + +E +KL  
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEEQQAKYEE-------KLVESAQKAKSLEKEIQKL-- 734

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K K+          K+ D+N    ++      D+K L++++D ++ ++ SG+I+L  
Sbjct: 735 ---KDKMAAAESANIMGKVQDINGTKVLVAALEGADNKNLRTMVDDIKNQVGSGVILLAN 791

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           I  + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +      AI
Sbjct: 792 I-NDDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPDAI 849

Query: 890 AGVASFLKK 898
             V  +L++
Sbjct: 850 QSVQPWLEE 858


>gi|261392163|emb|CAX49673.1| alanyl-tRNA synthetase (alanine--tRNA ligase; AlaRS) [Neisseria
           meningitidis 8013]
          Length = 874

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 525/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY           
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGY----------- 458

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 459 ------------TERQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V            +     ++  I E D+  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQI-EADAAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|325204570|gb|ADZ00024.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 874

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 526/911 (57%), Gaps = 58/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY           
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGY----------- 458

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 459 ------------TERQTESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKAL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   AK K +L V            +     ++  I E D+  L+ ++  L  K  + +I
Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQI-EADAAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|83858787|ref|ZP_00952309.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83853610|gb|EAP91462.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 886

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/909 (49%), Positives = 598/909 (65%), Gaps = 38/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ +  IR+ FL+FF K GHE++ S+ L+P +DPTL+F N+GMVPFKN+FTG E+  Y  
Sbjct: 1   MTALRDIRSQFLDFFAKEGHEIVQSAPLVPQDDPTLLFVNAGMVPFKNVFTGAERRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW ++T+EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDNAIEFAWKMVTQEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY ED+EA  LW+KI+GLS D+IIRI+T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PKDKLLVTVYSEDDEAAALWRKIAGLSDDRIIRISTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PG   E+G+R+IEIWNLVFMQFEQQ   ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 PDIWGGPPGTPEEDGDRFIEIWNLVFMQFEQQAGGERINLPKPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD+DLFK LI ASE+   +K EG+ + +HRVI DHLRS+SFLIADG+ P+NEGRGY
Sbjct: 241 VHNNYDVDLFKTLINASEEALKVKAEGDALASHRVIADHLRSTSFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EP++  L   L  EMG A+PEL +A  +IEETLR E+ERF 
Sbjct: 301 VLRRIMRRAMRHAHLLGANEPVLFGLAKTLSDEMGEAFPELPRALPVIEETLRGEEERFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LLD   ++L + + L G+ AFKLYDT+G PLD+ +D L  RGL+ +D   F+
Sbjct: 361 RTLGRGLTLLDEATANLKEGDALPGETAFKLYDTYGFPLDLTEDALRTRGLS-VDHAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR+ ARA   G G    E +WFS++++ GAT F+GY    G              
Sbjct: 420 AAMERQRADARASWTGSGQAAPEALWFSVRDRLGATDFVGYHTHDG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538
                     S + AIV  G    E  +GQ  E++F  TPFYAE GGQ+GD G    D G
Sbjct: 466 ---------QSELTAIVSDGAEQSELSAGQGAELIFKSTPFYAEGGGQIGDAGVITFDNG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R  ++DVQK+A  I+ H  ++E G ++   +   ++D + R ++  NHSATHLLH AL 
Sbjct: 517 ARFIVSDVQKRAGSIYAHIGVLEEGGIKIGDAASQSVDAERRTKVRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H+K +T AE  +IE  VN +I QN    T  M  E 
Sbjct: 577 DVLGPHVTQKGSYVGPDRLRFDFSHAKALTEAETAAIEAQVNAVIRQNAEAKTAEMTPEK 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY + VRV+++      D   +S  LCGG HV+ TG+I L  IV ESS
Sbjct: 637 AIEAGALALFGEKYGETVRVLAMGDSLKSDDKAYSVELCGGIHVNRTGDIALFKIVGESS 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             AG+RR+EA+TG+ AR  L  +  K K  A+ LKV    +V R+E +  E + L+   A
Sbjct: 697 AAAGVRRLEAVTGEAARQWLEAEANKAKDAAAALKVPTVELVERIEALQAERKTLERQLA 756

Query: 776 KRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           + K QL +              +I  +  ++ ++  V  K+L+ ++D  +K++ SGI   
Sbjct: 757 EAKKQLAMGGGGGGGAAPAGPEEINGIKLIARVVEGVGGKDLRGLVDEARKQMGSGIAAF 816

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           VG+  + KA++ + +T+DL    +AVD  R  +  +GG GGGGRP  AQ+GGP+G+KA+ 
Sbjct: 817 VGV-NDGKAALAVGLTDDLTGSMSAVDFVRAGSAAVGGKGGGGRPDFAQAGGPDGDKAED 875

Query: 888 AIAGVASFL 896
           A+A +   L
Sbjct: 876 ALAAIRQVL 884


>gi|224825848|ref|ZP_03698952.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224602072|gb|EEG08251.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 877

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/914 (42%), Positives = 535/914 (58%), Gaps = 60/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF   GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK  Y   
Sbjct: 1   MKTSEIRQKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +   
Sbjct: 61  TTSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWEFLTGEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY  D+EAF +W K  GL  +KI+RI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKEKLMVTVYASDDEAFDIWHKTVGLPVEKIVRIGDNKGAAYASDNFWTMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE + GG PGS  E+G+R++EIWN VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEEVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDETGTLHPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++TVLQ   +NY+ D    L++A+ + TG++Y   N+ + +VI DH+R+ SF+IADGIL
Sbjct: 241 RLSTVLQHVKSNYETDGLACLVRAAARETGVEY-SQNVPSLKVIADHIRACSFMIADGIL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI RRA+ +   LG        ++  L  EMG AYPEL Q +  IE+ L
Sbjct: 300 PSNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVEEMGGAYPELRQQQAHIEDNL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+ RF +TL+ G+ L+D  L   G    ++GD  FKLYDT G P+D+  DI   R + 
Sbjct: 360 RAEEVRFAETLEHGMALVDAALQ--GGKIRMDGDTIFKLYDTFGFPVDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D+  F  A+  QR RARA S    +G       +L+     T+F GY+          
Sbjct: 418 -VDMEGFEHAMNAQRERARAASSFKMTG-------NLEYAGADTRFHGYET--------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           V + V A+ +    VE+   G++  VV D T FYAE GGQ+GD 
Sbjct: 461 --------------ASVDAKVLALFKGNTPVEQLAEGEEGVVVLDDTAFYAEGGGQVGDC 506

Query: 532 GCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G     G       +TD QK     F H   V RG L    ++  TID   R   + NHS
Sbjct: 507 GEISVSGGVGALFDVTDTQKIKAATFGHSGRVVRGALHVGDTVQATIDLHKRLATARNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS +  +  RFD  H +P++ A++  IE  VN I+  N+ 
Sbjct: 567 ATHLLHAALRHVLGSHVAQKGSLVNAERTRFDFAHGEPVSVAQIAEIERVVNRIVLHNVE 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +M  +DAI +GA AL G KY D VRV+ +     G  S+ LCGGTHV  TG+I   
Sbjct: 627 VSANVMAYDDAIRAGAIALFGEKYGDEVRVLKM-----GEFSTELCGGTHVKRTGDIGFF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            IV+E  + AG+RRIEA+TG+ A ++   Q+  +K  A  LK      VVG++  + +  
Sbjct: 682 KIVAEGGVAAGVRRIEAVTGEGAVAYAQQQESLVKEAAGALKAQTSEEVVGKIGSLQDNL 741

Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L+   ++ K +L          S  +I  +  ++  +   D+  L+  +D L+ K++S
Sbjct: 742 KALEKELSRLKAKLAASAGDTLADSAVEIGGIKVLAAELEGADNTALRETLDKLKDKLKS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             I+L     + K S++  VT DL  +  A +L    A+ + GG GGGRP MAQ+GG   
Sbjct: 802 AAIVLAA-KGDGKVSLVAGVTADLTGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQP 859

Query: 883 NKADQAIAGVASFL 896
            K  +A+AGV +++
Sbjct: 860 EKLAEALAGVNAWV 873


>gi|114320637|ref|YP_742320.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311690|sp|Q0A8K7|SYA_ALHEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114227031|gb|ABI56830.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 869

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 532/903 (58%), Gaps = 46/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FLEFF+  GH ++PSS L+P NDPTL+FTN+GMVPFK++F G+E+  Y  
Sbjct: 1   MKSSAEIRNAFLEFFEHRGHTVVPSSPLVPANDPTLLFTNAGMVPFKDVFLGKEQRGYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT+   L
Sbjct: 61  ACSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWEFLTRTIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL++TVY+ED+EA  +W    G+  ++  RI   DNFWSM +TGPCGPCSEIF+D  
Sbjct: 121 PAERLWVTVYEEDDEAADIWLNEIGVDPERFGRIGAADNFWSMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+RY+EIWNLVFMQ+++  +     LP   +DTGMGLER+A V+Q 
Sbjct: 181 PEVPGGPPGSPEEDGDRYVEIWNLVFMQYDRDAEGRLAPLPMPCVDTGMGLERLAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +N++IDLF+ LI A+  + G+  + +N  + +VI DH+R+ +FLI DG++PAN+GRGY
Sbjct: 241 VHSNFEIDLFRRLIGAAAALAGLPEDSDN-ASLKVIADHIRACAFLITDGVVPANDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  EP    L+  L  EMG A+PEL + + L+E  L  E++RF 
Sbjct: 300 VLRRIIRRAVRHGYKLGIDEPFFHRLVQPLADEMGGAFPELPERQALVERLLLQEEQRFR 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL+  L  L   E + G+  FKL DT+G P+D+  DI   R L  +D+  F 
Sbjct: 360 ETLEQGLKLLEEDLRQLTGAE-IPGETVFKLADTYGFPVDLTADIARERDLT-LDMAGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR RARAHS         + +       G + FIGYD L G              
Sbjct: 418 ACMAAQRERARAHSQFKVQHGEGEQFE------GESHFIGYDQLEGH------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+ + G  V+   +G++  V+ DQTPFYAE+GGQ+GD G     G 
Sbjct: 459 ----------GEVLALFRDGRSVQTLSAGEEGMVILDQTPFYAESGGQVGDQGVLETAGG 508

Query: 540 R-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D  K+ EG   H   +  G +     L   +D + R   ++NHSATHLLH AL 
Sbjct: 509 EVFEVRDTLKQGEG-HGHLGRLREGRIHVGDRLRAQVDAETRWATALNHSATHLLHAALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV Q GS + PD LRFD  H +  ++ +L+ IE  VND I  N       M  +D
Sbjct: 568 GVLGTHVQQKGSLVAPDRLRFDFAHYEAPSTEQLEQIERIVNDEIRANRAADIEHMAYDD 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA AL G KY D+VRV+       G  S  LCGGTHV  TG+I L  ++SE  +  
Sbjct: 628 AIETGAMALFGEKYGDQVRVLRF-----GEFSIELCGGTHVERTGDIGLCKLISEGGVAG 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAK 776
           G+RRIEA+TG RA   +   +++L  +A  +K S  N   RV ++ +  +  + +L   K
Sbjct: 683 GVRRIEAVTGDRAVMWVQRTEQRLVQVAETVKASPDNAAVRVAQLVDRLKGQEKELERLK 742

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEK 834
           +KL          +  D+  +  + + VD+  K L+  +D L+ K+ + +I+L  ++ + 
Sbjct: 743 QKLASQAGSDLAGQAVDIGGVKVVAARVDADNKALRDTVDQLRNKLGTAVIVLGAVAGD- 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  V++D  DR  A DL R  A+ + GG GGGRP  AQ+GG      + A+A V S
Sbjct: 802 KVRLVAGVSKDCTDRIKAGDLVRQVAEQV-GGKGGGRPDFAQAGGEQPEHLETALASVES 860

Query: 895 FLK 897
            ++
Sbjct: 861 LVR 863


>gi|294649969|ref|ZP_06727359.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824138|gb|EFF82951.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 884

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/914 (43%), Positives = 535/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 7   FMTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT  +  
Sbjct: 67  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RLY+TVY  D+EAF +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 127 GLPKDRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 187 CSEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 247 ERISAVLQHVNSNYEIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 304

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE T
Sbjct: 305 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEAT 364

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L K  ++ G+  FKLYDT+G P D+  DI   R L
Sbjct: 365 LIREEEQFAKTLEQGLKLLEGELAQL-KGNVIAGETVFKLYDTYGFPTDLTADIARERDL 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + S+ +  G TQF GYD   G     
Sbjct: 424 T-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATHG----- 471

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 472 ------------------QGQIVAIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGD 513

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    ++ D  KK+ G FVH  IV  G L+   S+  T+    R   + NHSAT
Sbjct: 514 TGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV 
Sbjct: 573 HLLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVT 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY D VRV+S+    +    S  LCGG HV  TG+I L  
Sbjct: 633 TELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEEKNFSIELCGGIHVKRTGDIGLFK 692

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++++ S LK  +   V +VE + E    
Sbjct: 693 ITSEGGVAAGVRRIEAVTGTQALEVVQKVDHDIQTINSLLKAQKDQTVEKVEAVVETASS 752

Query: 770 LQL--IHAKRKLQLNVEDLSCHKIADVNF---MSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ       +KL          ++ D+     +   +  +D+K L+++ D+++ K++  +
Sbjct: 753 LQKQIEQLNQKLASFQAAELLDQVKDIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAV 812

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P   K
Sbjct: 813 IILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEK 870

Query: 885 ADQAIAGVASFLKK 898
            DQ  A + ++L++
Sbjct: 871 FDQVFAALPAWLEQ 884


>gi|226952658|ref|ZP_03823122.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226836595|gb|EEH68978.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 884

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/914 (42%), Positives = 534/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 7   FMTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT  +  
Sbjct: 67  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RLY+TVY  D+EAF +W K  G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 127 GLPKDRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 187 CSEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 247 ERISAVLQHVNSNYEIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 304

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE T
Sbjct: 305 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEAT 364

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L K  ++ G+  FKLYDT+G P D+  DI   R L
Sbjct: 365 LIREEEQFAKTLEQGLKLLEGELAQL-KGNVIAGETVFKLYDTYGFPTDLTADIARERDL 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + S+ +  G TQF GYD   G     
Sbjct: 424 T-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGYDATHG----- 471

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 472 ------------------QGQIVAIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGD 513

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    ++ D  KK+ G FVH  IV  G L+   S+  T+    R   + NHSAT
Sbjct: 514 TGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILG HV Q GS +  D LRFD  + +P+T  +L+ IE  VN  +  N PV 
Sbjct: 573 HLLHAALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVT 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY D VRV+S+    +    S  LCGG HV  TG+I L  
Sbjct: 633 TELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEDKNFSIELCGGIHVKRTGDIGLFK 692

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++++   LK  +   V +VE + E    
Sbjct: 693 ITSEGGVAAGVRRIEAVTGTQALEVVQKADTDIQTINGLLKAQKDQTVEKVEAVVETASS 752

Query: 770 LQL--IHAKRKLQLNVEDLSCHKIADVNF---MSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ       +KL          ++ ++     +   +  +D+K L+++ D+++ K++  +
Sbjct: 753 LQKQIEQLNQKLASFQAAELLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDAV 812

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S++  V +       A D+ +  A+ L GG GGG+P +AQ G P   K
Sbjct: 813 IILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNEK 870

Query: 885 ADQAIAGVASFLKK 898
            DQ  A + ++L++
Sbjct: 871 FDQVFAALPAWLEQ 884


>gi|239996387|ref|ZP_04716911.1| alanyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 865

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/901 (42%), Positives = 537/901 (59%), Gaps = 48/901 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F+++F+ +GH+ + SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   STADLRNKFIDYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDCFLGAEKRSYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE  L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIEFAWNFLTKEIGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   G+  +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183

Query: 183 IPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG   E+G+R+IEIWNLVFMQF +Q       LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF++LI+++  + G +   N   + RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDLFQNLIKSAASIVGSEDLENK--SLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ +L  EMG AYPEL+    +IE+ LR E+E+F KT
Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLAKEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG+ +L+  L  L  D +  GDV FKLYDT+G P D+  D+     L  ID   F   
Sbjct: 362 LARGMAILNDTLETLEGDTV-PGDVVFKLYDTYGFPTDLTNDVAREHDLK-IDEEGFEA- 418

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
                +     +    +      + S       T F GY  + G                
Sbjct: 419 -----AMQAQRARAQQASNFGADYNSKLAIDHTTSFTGYTDVEG---------------- 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  ++     VE+   GQ+  VV D TPFYAE+GGQ GD G         
Sbjct: 458 -------QANVVELIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD QK     F H  I  +G +    +    ID  NR  +  NHSATHLLH AL  IL
Sbjct: 511 IVTDTQKMGNA-FAHKGIA-KGSVSKGDTATAAIDAANREAIKKNHSATHLLHAALREIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +    +RFD +H + +T+ +L  IE  VN  I  N  + T +M+ ++A A
Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTAEQLAEIERRVNQEIRANHTLATELMDLDEAKA 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY+++VRVV++     G  S  LCGGTHV+ TG+I L  I SE+ I +G+R
Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVTRTGDIGLFKITSEAGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKL 779
           RIEA+TG+ A   +  Q   L SL++ LK    NV+ RV  +  + ++L+     AK+KL
Sbjct: 684 RIEAVTGEHALEVVQTQQATLSSLSALLKTDSQNVLDRVVSLQNQTKELEKALNSAKQKL 743

Query: 780 QLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                        ++N +  +I     V++K L+S+MD ++ +I  GI++L G++ + K 
Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANDAKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++  VT++L  +  A +L    A  + GG GGGRP MAQ+GG       QA+  V ++L
Sbjct: 803 NLIAGVTKNLTSKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDQPENLGQALDSVNAWL 861

Query: 897 K 897
           +
Sbjct: 862 Q 862


>gi|83305856|sp|Q4ZQI4|SYA_PSEU2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLQAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|330939519|gb|EGH42850.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 874

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRAADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLQAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVLFVEQ 872


>gi|82701157|ref|YP_410723.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123545319|sp|Q2YD40|SYA_NITMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82409222|gb|ABB73331.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 862

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/904 (41%), Positives = 540/904 (59%), Gaps = 50/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S +R  FLEFF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y  
Sbjct: 1   MKS-SEVRQKFLEFFETHGHTIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT    +
Sbjct: 60  AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAIRFAWEFLTDILKI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL+ITVY ED+EA  +W    G+ + +  RI T DNFW M +TGPCGPCSEIF+D  
Sbjct: 120 PRERLWITVYAEDDEAADIWLNEVGIDSSRFTRIATQDNFWQMGDTGPCGPCSEIFYDHG 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G     + +G+RY+EIWNLVFMQ+ + +      LP+ S+DTGMGLER++ V+Q+
Sbjct: 180 PEIPGGPPGTPNADGDRYVEIWNLVFMQYNRDSAGTLHPLPRPSVDTGMGLERISAVMQQ 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+A+ + T      ++ +N  VI DH+R+ SFLIADG++P NEGRGY
Sbjct: 240 VHSNYEIDLFQQLIKAAARATNTTDLSSSSLN--VIADHIRACSFLIADGVIPGNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L + MG AYPEL++AK  +   L+ E+ERF 
Sbjct: 298 VLRRIIRRAIRHGYKLGQKQPFFHQLVEDLASVMGQAYPELMEAKTRVSAVLKQEEERFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ +L+  L     D +L+G+  F+LYDT G PLD+  DI   RG+A ID   F+
Sbjct: 358 ETLENGMQVLEAALR--RGDRMLDGETLFRLYDTFGFPLDLTADIARERGIA-IDEAGFD 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E+QR RAR  S  +          ++     +T F GY+ LR               
Sbjct: 415 QAMEQQRERARTTSKFIMQ-------EAIAYSGPSTTFHGYESLR--------------- 452

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AI ++G  VE   +G +  +V D+TPFYAE+GGQ+GD+G  +    
Sbjct: 453 --------QEGQVLAIYKEGSRVEFIEAGDEAVIVLDKTPFYAESGGQVGDSGELLAANG 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D QK    +F H  ++  G L T  +++  +D   R +   NHS THL+H AL  
Sbjct: 505 TFAVADTQKIQADVFGHKGLLRSGRLATGDAVLAEVDRAARARTERNHSVTHLMHKALRE 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  +  RFD  H++P+T AE++ +E  VN  I  N     R+M  EDA
Sbjct: 565 VLGHHVQQKGSLVDANKTRFDFAHNQPVTDAEIRKVEMLVNAEILANAATEARMMAIEDA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA  L G KY+D VRV+ +        S  LCGGTHV  TG+I L  IV+ES + AG
Sbjct: 625 KKSGAMMLFGEKYSDEVRVLDIG------TSRELCGGTHVKRTGDIGLFKIVAESGVAAG 678

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI--HAKR 777
           +RR+EA+TG+RA +++  Q+ +L+ +A+ +K    +   R+ +I +  + L+      K 
Sbjct: 679 VRRVEAVTGERALTYIQEQELQLQRVAAAVKAQPQDAAARITQILDNVKHLERELGRMKS 738

Query: 778 KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           KL  +  D       +I  V  ++  + E D K L+  +D  + K +S + +L  + ++ 
Sbjct: 739 KLASSQGDDFADRVREIKGVKVLAVCLEEADPKTLREAVDKFKNKFKSCVTVLAAV-EDG 797

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT DL  R  A DL    A+ + GG GGGR  +AQ+GG   +    A+  VAS
Sbjct: 798 KVKLIAGVTSDLTARLKAGDLVNFVAQQV-GGKGGGRADLAQAGGTVPDSLPAALESVAS 856

Query: 895 FLKK 898
           ++++
Sbjct: 857 WVEQ 860


>gi|83590480|ref|YP_430489.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|123524268|sp|Q2RHZ3|SYA_MOOTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83573394|gb|ABC19946.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
          Length = 881

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/901 (41%), Positives = 533/901 (59%), Gaps = 43/901 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF   GH ++ SSSL+P NDPTL+FTN+GMV FK+++ G ++  +   
Sbjct: 1   MTGNELRERFLKFFASKGHTIVHSSSLVPANDPTLLFTNAGMVQFKDVYLGLDRRPFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+  +L 
Sbjct: 61  TTAQKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWEFLTRVLELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL++TVY ED+EA++LW++I+G+ A++I+R+   DNFW+M +TGPCGPCSEI +D+G 
Sbjct: 121 PERLWVTVYQEDDEAYQLWQEIAGIPAERIVRMGEKDNFWAMGDTGPCGPCSEIIYDRGP 180

Query: 182 CIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       + + +R++EIWNLVFMQ+E+ +      LP+ SIDTGMGLER+A+VLQ
Sbjct: 181 EHACSSTPCALGACDCDRWLEIWNLVFMQYERDSNGNLSPLPRPSIDTGMGLERVASVLQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              +N+D DL   LI+A E++TG  Y+ G      RVI DH RS +FLIADGILP NEGR
Sbjct: 241 GVDSNFDTDLIAPLIKAVEKITGRTYDPGEAGFPFRVIADHARSCTFLIADGILPGNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            YVLRRI+RRA  + + LG  EP +  L+  +   MG AYPE+ + +  I   +  E+ R
Sbjct: 301 SYVLRRILRRAARFGKALGIDEPFLYRLVDTVVAIMGGAYPEVAEQQEHIARVIEQEEIR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL+ GL +L+G+L    ++  E+++G  AF LYDT+G PLD+ ++I    G   +D 
Sbjct: 361 FHETLNDGLKVLNGILERARQEGREVVSGLEAFTLYDTYGFPLDLTEEIAGEGGFK-VDR 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A+  QR RARA    + +      +    E    T F GYD L            
Sbjct: 420 DGFEKAMAAQRERARAAREDVKAYDFALAFAGALEDISGTAFTGYDQLED---------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V A+ Q+G  V    +     VV D+TP Y E GGQ+GD G   
Sbjct: 470 -------------KGTVLALFQEGARVTSLEANATGYVVLDRTPCYPEGGGQVGDRGELK 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G + ++ D ++  +G  VH   V  G L     + + +D + R+  + NH+ THLLH 
Sbjct: 517 WSGGQARVEDTRRLPDGKIVHQINVTAGTLVVGQEVEIAVDRERRQATARNHTVTHLLHR 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV+Q GS +TP+ LRFD TH  P+T  EL+++E  VN  I  NLPV T   +
Sbjct: 577 ALKNILGEHVNQAGSLVTPERLRFDFTHFAPLTGEELRAVEAEVNQKILANLPVTTLETS 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY +RVRVV +       +S  LCGGTH+ ST E     +VSES 
Sbjct: 637 YQEAKAMGATALFGEKYGERVRVVKI-----DAYSMELCGGTHLGSTSEAGSFRLVSESG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RR+EA+TG  A    +   ++L ++A  LKV     + RV  + E+ ++ +   A
Sbjct: 692 IGAGVRRVEAVTGAAALEMALQDRQELATIAGLLKVPPDQAIQRVRHLLEQNKENERELA 751

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + +L    +        ++A V  +   +   D + L+ + + L+ ++ SG+++L G 
Sbjct: 752 QLRNELASYTIDKLLDRVQEVAGVPVLPARVQITDPEALREMAERLRSRLGSGVVIL-GS 810

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               + + + +V++DL+ R  +A +L R  A++  GG GGGR  MAQ+GG +  K DQA+
Sbjct: 811 QHNGRVNFVAMVSKDLVQRGIHAGNLLREVARIASGG-GGGRADMAQAGGKDPGKLDQAL 869

Query: 890 A 890
           A
Sbjct: 870 A 870


>gi|114771071|ref|ZP_01448511.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114548353|gb|EAU51239.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 885

 Score =  949 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/910 (49%), Positives = 594/910 (65%), Gaps = 38/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +V+ IR+TFL+FF+KN H ++ SS L+P NDPTLMFTNSGMV FKN F GQE   Y  
Sbjct: 1   MVSVNDIRSTFLDFFEKNNHTVVDSSPLVPRNDPTLMFTNSGMVQFKNQFLGQEIRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIIYAWDLITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  D+EA  +WKK +GLS D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKYAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PGS  E+G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+A +LQ 
Sbjct: 181 ESVFGGPPGSPEEDGDRFIEIWNVVFMQNEQFSDGTLKPLKMQSIDTGMGLERIAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DL + LI+AS Q TG+   G+  ++HRVI DHLRS+SFLI+DGILP+NEGRGY
Sbjct: 241 SHDNYDTDLMRDLIEASAQATGVDPYGDQNLHHRVIADHLRSTSFLISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL ++MG AYPEL  A+ LIEE+L  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPIMHQLVPALVSQMGQAYPELGHAQSLIEESLLLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD           L+G  AFKLYDT G PLD+ QD L  +G+  +D+  FN
Sbjct: 361 TTLDRGLKLLDEETGVFASGATLSGKTAFKLYDTFGFPLDLTQDALREKGV-DVDVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA  +G G    E IWF + +K+G T F+GYD                  
Sbjct: 420 DAMSEQKAKARAAWVGSGEVADEGIWFDIADKHGTTDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A++Q G IV +   G  V VV +QTPFYAE+GGQ+ D G    +  
Sbjct: 463 ------QTSEGQILALLQDGNIVNKVSEGDDVMVVLNQTPFYAESGGQIADNGSINVEKN 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + ITDV+KKA G+F+H   V  G +    S  L+++ + R  +  +H+ATHLL+ AL +
Sbjct: 517 EIIITDVKKKA-GVFIHIGRVVFGEISNGSSAELSVNTEMRSGICNSHTATHLLNEALRS 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H++Q GS    + LRFD +HSK +T +EL+ +E  VN++I QN  V TRIM  EDA
Sbjct: 576 KLGQHIAQRGSLNAENRLRFDFSHSKSMTQSELRDVELEVNNLIRQNSSVKTRIMTPEDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  +        G  +S  LCGGTHV  TG+I    +++
Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGNKKDSGKGLAGNTYSLELCGGTHVQRTGQIGAFALIA 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES+   G+RRIEA TG+ A  H   Q + +  LAS  K    NV+ RV+ + +E + LQ 
Sbjct: 696 ESASAGGVRRIEAFTGKTAELHHAEQSKIMNELASIFKTKTENVIDRVKSLIDERKLLQS 755

Query: 772 -LIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +I+ ++ + +   D S +  KI + NF      +V SK+L+S++D  + ++ SGII+L+
Sbjct: 756 EIINLRKAVAMGSNDDSQNILKINNFNFYVQTFDDVPSKDLRSLVDEHKNRLGSGIILLI 815

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   KA++   VT DL D+ NAVDL ++ A  LGG GGGGRP MAQ+GG +     +A
Sbjct: 816 SGA-GGKAAISAGVTSDLTDQINAVDLVKIVAVELGGKGGGGRPDMAQAGGNDMANVKKA 874

Query: 889 IAGVASFLKK 898
           I+ V +FLK+
Sbjct: 875 ISLVENFLKE 884


>gi|126737803|ref|ZP_01753533.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126721196|gb|EBA17900.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 883

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/893 (48%), Positives = 574/893 (64%), Gaps = 39/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG E   Y+ 
Sbjct: 1   MATLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFTNSGMVQFKNCFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKE  +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITKELVV 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++W+KI G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 121 PKERLYTTVYHTDDEAFEIWRKI-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNEKFADGSMIDLEMQSIDTGMGLERIAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK LI+AS  VT     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 240 THDNYETDLFKSLIEASADVTSTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 300 VLRRIMRRAMRHASLLGAKDPVMHKLVPALVQKMGAAYPELGQGQALIEETFEQEETRFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD   + + K + L+G+ AFKLYDT+G PLD+ QD L A+ +  +D   F+
Sbjct: 360 KTLDRGLKLLDDASADMDKGDTLSGETAFKLYDTYGFPLDLTQDALRAKEIE-VDTQGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ ++RA  +GLG     K++F + +  G T+F+GY+                  
Sbjct: 419 AAMKEQKEKSRAGGIGLGEAADVKVYFDILDASGPTEFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + AIV+ G  VE A  G+ V+++ +QTPFY E+GGQ+GD+G    +G 
Sbjct: 462 ------EKAEGQIAAIVKDGAKVESAGRGETVQIILNQTPFYGESGGQVGDSGVLTVEGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++D  KK EG+F+H A V  G +   +   + +D++ R Q+  NHSATHLLH AL  
Sbjct: 516 TAVVSDT-KKVEGLFLHIAEVTEGQIAVGLGAAMEVDHKRRSQIRANHSATHLLHEALRN 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +++ EL  +   VND I QN  V TRIM  +DA
Sbjct: 575 ALGEHVAQKGSLNADDRLRFDFSHNKAMSAGELVKVGAEVNDFIRQNTEVTTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RDLGAQALFGEKYGEEVRVVSMGKAETGKGHDGQTYSIELCGGTHVKQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A ++L  +  ++  +A  LK     V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAYAYLEREASRMAEIAGALKAQPAEVMDRLKAMMDERKALQNE 754

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K Q+ +           +I    F++  +  V  K+L+ ++DA ++ I SG+I+L+
Sbjct: 755 ISNLKQQVAMGGGAAGGSEAKEIGGKKFLAQALQGVSGKDLRGLIDAHKQNIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
               + K +V   VTEDL    +AVD+ + +   +GG GGGGRP MAQ GG +
Sbjct: 815 A-EDDGKVAVAAGVTEDLTSDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866


>gi|53802423|ref|YP_112920.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|59798499|sp|Q60BS6|SYA_METCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53756184|gb|AAU90475.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 867

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/903 (41%), Positives = 540/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF   GH ++ SSSL+P NDPTL+FTN+GMV FK++F G+E   Y   
Sbjct: 1   MTSAELRARFLKFFADRGHTVVASSSLVPVNDPTLLFTNAGMVQFKDVFLGREHRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L 
Sbjct: 61  ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIVYAWEFLTEVLMLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ITVY ED+EA ++W +  G+   +  RI T+DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PERLWITVYAEDKEAERIWLEEVGVDPGRFTRIATSDNFWSMGDTGPCGPCSEIFYDHGP 180

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PG   E+G+RY+EIWNLVFMQ+E+        LPK S+DTGMGLER+A V+Q  
Sbjct: 181 SVAGGPPGTPEEDGDRYVEIWNLVFMQYERAGDGTLTPLPKPSVDTGMGLERLAAVMQRV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NNYDIDLF++L++A+ ++ G      +  + RVI DH+RS +FL+ DG+LP+NEGRGYV
Sbjct: 241 RNNYDIDLFRNLVKAAAELAGTTDLAQS--SLRVIADHIRSCAFLVTDGVLPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L+  LC EMG AYPEL++A+  +E+ L  E+ERF +
Sbjct: 299 LRRIIRRAIRHGYKLGIREPFFYKLVGPLCAEMGQAYPELVEARPRVEQVLDKEEERFAE 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+ +LD  +  LG   +++GD AF+LYDT+G P+D+  D+    GL  +D+  F +
Sbjct: 359 TLEQGMKILDVAIRDLG-SPVISGDTAFQLYDTYGFPVDLTADVAREHGL-QVDMAGFER 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR RARA S       +++I   +     A +F GY                    
Sbjct: 417 AMEAQRERARAASH-FSVDYSQEIHLDV-----ACEFTGY-------------------- 450

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + + A+++ G+ V+   +G+   VV ++TPFYAE+GGQ+GD G    D   
Sbjct: 451 ---RNAVEDTRIVALLRDGQAVDRLEAGEDGVVVLEKTPFYAESGGQVGDRGVIRSDSAV 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+   + +H   +  G L         ++   R   ++NHSATHLLH AL  +
Sbjct: 508 FEVADTRKQGSDLILHRGKLREGALLRGAVCRAEVEQSLRLATALNHSATHLLHAALRRV 567

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P+ LRFD +H +P++  +L  IE  VN  I +N  V   +M ++ A+
Sbjct: 568 LGEHVTQKGSLVDPERLRFDFSHFEPVSPEQLDEIERLVNREIRRNAEVTAEVMAKDAAM 627

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRV+ +     G  S+ LCGG H    G+I L  IVSES + AG+
Sbjct: 628 RLGAMALFGEKYGDDVRVLRI-----GDFSTELCGGIHARRAGDIGLFKIVSESGVAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A   +   +  L+ LA  +K  +  +  R+++++E+ R L+    + K +
Sbjct: 683 RRIEAVTGAAAVEAVEATERLLRRLAERMKAGRDTLEERLDQMFEKNRALERELERLKAK 742

Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                          IA V  ++  + E D++ L+ ++D L+ ++ S  I+L  + +  K
Sbjct: 743 TAGAAGADLASRAVDIAGVKVLAARVDEADARMLRELVDQLKDRLGSAAIVLAAV-EGGK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT D      A DL    A  + GG GGGRP +AQ+GG    +   A+ GV  +
Sbjct: 802 VSLVAGVTRDQTGHIRAGDLVNSVATRI-GGKGGGRPDLAQAGGNRPEELQGALDGVPEW 860

Query: 896 LKK 898
           +++
Sbjct: 861 VRR 863


>gi|330953630|gb|EGH53890.1| alanyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 874

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGR--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVSHLNEGEEGVVILDVTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLQAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I + +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|291614561|ref|YP_003524718.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584673|gb|ADE12331.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 873

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/912 (41%), Positives = 540/912 (59%), Gaps = 57/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL++F   GH ++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-SEIRQKFLDYFASKGHTVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ F L
Sbjct: 60  AASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVFKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +LY+TVY ED+EA+ +W K  GL+AD++IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKDKLYVTVYAEDDEAYDIWTKKVGLAADRVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  IPGGLPG   E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 180 EIFYDHGAHIPGGLPGTPEEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ    NY+IDLF+ LI+A+ + T       +  + RV+ DH+R+ SFLIADG++P
Sbjct: 240 ISAVLQHVHANYEIDLFQALIKAAARETNQT--NLDQPSLRVLADHIRACSFLIADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG  E     ++P L  +MGSAYPEL+  ++ ++  L+
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGAREAFFYKMVPDLVEQMGSAYPELVAEQVRVKGILK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ERF  T++ G+ +L+  L+ + K   ++ NG+ AFKL+DT+G PLD+  DI   RG+
Sbjct: 358 LEEERFFATIEHGMAILEADLAEMEKAGGKVFNGETAFKLHDTYGFPLDLTADICRERGV 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D  +FN A+  Q+ +ARA           K+  +L+    AT F GY+ L       
Sbjct: 418 K-VDDAAFNAAMARQKEQARAAGK-------FKMAANLEYSGPATTFHGYESLEH----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G  V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 465 ------------------KGNILALYKDGVEVNELNEGDLGVVVLDDTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK    +F HH +V+ G L     +   +D   R +   NHSAT
Sbjct: 507 SGELRSVHGIFAVEDTQKIQASVFGHHGVVKTGKLSVGNGVTARVDVAARSRTMRNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG+HV Q GS +  D  RFD  H++P++ AE++ +E  VN  I  N    
Sbjct: 567 HLMHKALREVLGTHVQQKGSQVDADKTRFDFVHTQPMSDAEIRKVEAIVNAEILSNAECQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +R+M  E+A  +GA  L G KY D VRV+++        S  LCGGTHV  TG+I L  I
Sbjct: 627 SRVMPIEEAQKTGAMMLFGEKYGDVVRVLNIGS------SIELCGGTHVKRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+ES + AG+RR+EA+TG+ A + +  Q+ +L+ +A  +K        R+ +I +  + L
Sbjct: 681 VAESGVAAGVRRVEAVTGEGALALVQQQEVQLQQVADAVKAQPQEAAARITQILDNVKSL 740

Query: 771 QLIHA--KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K KL     D        ++ V  ++  +   D+  L+  +D L+ K++S  +
Sbjct: 741 EKELAALKSKLASAQGDELLAQAQDVSGVKVLAAKLDGADAAVLRETLDKLKDKLKSAAV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  ++ E K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG      
Sbjct: 801 VLASVA-EGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPEHL 858

Query: 886 DQAIAGVASFLK 897
            +A+A V  ++K
Sbjct: 859 AKALASVPDWVK 870


>gi|114330803|ref|YP_747025.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122314262|sp|Q0AHX2|SYA_NITEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114307817|gb|ABI59060.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91]
          Length = 863

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/904 (41%), Positives = 547/904 (60%), Gaps = 49/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K  Y  
Sbjct: 1   MKS-SEIRQKFLDFFETHGHVVVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT   ++
Sbjct: 60  AVSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAILFAWEFLTGPLNI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L+ TVY ED+EA  +W     ++  +++RI T+DNFW M ETGPCGPCSEIF+D G
Sbjct: 120 PKDKLWATVYAEDDEAADIWLNEVKIAPSRLVRIATSDNFWQMGETGPCGPCSEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS   +G+RY+EIWNLVFMQ+ +    E   LPK S+DTGMGLER+A V+Q+
Sbjct: 180 PEVAGGPPGSEDADGDRYVEIWNLVFMQYNRDTSGELHPLPKPSVDTGMGLERIAAVMQQ 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+A+ +VTG +   NN  + +VI DH+R+ +FLI DG++P NEGRGY
Sbjct: 240 VHSNYEIDLFRCLIEAAARVTGEQDLSNN--SLKVIADHIRACAFLITDGVIPGNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L   MG AYPEL+ AK  +   +R E+ERF 
Sbjct: 298 VLRRILRRAIRHGYRLGQKQSFFHLLVDDLVDVMGQAYPELMAAKKHVIAVIRQEEERFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+ G+ +L+  L+   +  +L GDV F+LYDT G P+D+  DI   RG  GID+  F 
Sbjct: 358 ETLENGMGVLEAALA--RESNMLPGDVVFRLYDTFGFPVDLTADIARERG-GGIDLAGFE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR RARA                L+     T+F GY+ L+               
Sbjct: 415 MCMAQQRDRARASGKFTMQAG-------LEYVGLPTEFHGYETLQH-------------- 453

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +  + ++G  V+   +G +  VV DQTPFYAE+GGQ GD+G  +    
Sbjct: 454 ---------EAHILVLYKEGSHVDFIEAGDEAVVVLDQTPFYAESGGQAGDSGELLSGSG 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D QK    +F H  ++  G L T   ++  ++   R   + NHSATHLLH AL  
Sbjct: 505 TFTVKDTQKIQAKVFGHAGMLSSGRLVTGDRVIARVNPIARINTAYNHSATHLLHAALRQ 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG+HV+Q GS +  D LRFD +H+  + + E++ +E+ VN  I +N  V T++M  ++A
Sbjct: 565 ILGNHVTQKGSLVDADRLRFDFSHNSAMQANEIRQVENLVNAQIRKNHEVATQLMAYDEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA AL G KY+D VRVVS+     G  S+ LCGGTHV  +G+I    IV+ES + AG
Sbjct: 625 VKQGAMALFGEKYSDTVRVVSM-----GDFSTELCGGTHVQHSGDIGFFRIVAESGVAAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+TG+ A ++   Q+++L+ ++  LK +      ++ ++ +  R+++      + 
Sbjct: 680 IRRIEALTGEAALAYTQQQEQQLQQVSDVLKAAPHEAALKLSQVLDHVRQVEKEITVLRS 739

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L             +I  +  ++  +  V+ + L+  +D  + +++S +++L G  ++ 
Sbjct: 740 KLAGMQSSSLIEQAQEIKGIRVLAAALENVNVRTLRETLDNFKSRLKSCVVVL-GTIEDD 798

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT DL  +  A DL    A+ + GG GGGR  MAQ+GG   +K  QA+  VA 
Sbjct: 799 KVMLIAGVTNDLTAKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPDKLPQALTSVAG 857

Query: 895 FLKK 898
           ++++
Sbjct: 858 WVER 861


>gi|77164443|ref|YP_342968.1| alanine--tRNA ligase [Nitrosococcus oceani ATCC 19707]
 gi|254433958|ref|ZP_05047466.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27]
 gi|123594696|sp|Q3JCK8|SYA_NITOC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76882757|gb|ABA57438.1| alanyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207090291|gb|EDZ67562.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27]
          Length = 873

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/903 (42%), Positives = 541/903 (59%), Gaps = 44/903 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL++F+   HE++PS  L+P NDPTL+FTN+GMV FK +F G+E   Y  
Sbjct: 1   MKSSAELRKIFLDYFRHQSHEIVPSGPLVPANDPTLLFTNAGMVQFKEVFLGREVRAYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+   L
Sbjct: 61  AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+ ED+EA  +W +  G+S ++  R    DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PPERLWVTVFKEDDEAANIWLQEIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS E EG+RY EIWNLVFMQ+++  +     LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PEIEGGPPGSPEQEGDRYTEIWNLVFMQYDRGKEGRLSPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF++LI A   ++G+  +     + RVI DH+RS  FLI DGI P+NEGRGY
Sbjct: 241 VHDNYNIDLFRNLIAAITALSGI--QNQEQTSLRVIADHIRSCVFLIVDGIQPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL + +  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYRLVEPLVQEMGEAYPELFRLQSQVERVLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL +L+  +  L  D ++ G+  F+LYDT G P+D+  DI   R L  +D+  F 
Sbjct: 359 ETLEQGLKILEQDIIDLS-DAVIPGETIFRLYDTFGFPVDLTADIARERKLT-LDMKGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+ +QR RARA S           + S  +    T+F GY+ LRG              
Sbjct: 417 QAMAKQRKRARAASRFKIE------YGSELQMDLETEFTGYEQLRG-------------- 456

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                  G  + +  + +  E VE+  +G+   VV D+TPFYAEAGGQ+GD G   G   
Sbjct: 457 ------EGQIAALFRLAETMETVEQLSAGESGMVVLDRTPFYAEAGGQVGDRGTLRGSNG 510

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD  K+     VH   V  G LR   S+   +D + R    +NHSATHLLH AL  
Sbjct: 511 LFNVTDTHKQ-GAAHVHLGEVRLGQLRVGDSIQSEVDRKYRTPTRLNHSATHLLHAALRE 569

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V Q GS +  D LRFD +H + + S +L+ IE  VN  I  NLPV T+IM  + A
Sbjct: 570 VLGEGVIQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLVNAKIRANLPVETQIMPLQQA 629

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG+I L  I++E  + AG
Sbjct: 630 LDAGVMALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGVAAG 684

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHA 775
           IRRIEA+TG+ A S +   +  L++L   LK S+ + V +     ++  ++ ++LQ + A
Sbjct: 685 IRRIEAVTGEAALSWVEEGEVCLEALMGRLKASRNSAVDKLEQLQQQTRQQEKELQRLKA 744

Query: 776 KRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K       +  +   +I  +  ++  I  VDSK L++ +D L+ K+ +  ++L G   E 
Sbjct: 745 KLATTGGADLSIQAQEIRGIKVLAARIDGVDSKTLRATVDQLKGKLITAAVVL-GTVVED 803

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT +   R  A DL    A+ + GG GGGRP MAQ+GG N +K D A+  V  
Sbjct: 804 KVVLIAGVTNNATSRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRNPDKLDAALDLVPK 862

Query: 895 FLK 897
           +++
Sbjct: 863 WVE 865


>gi|148978178|ref|ZP_01814708.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145962600|gb|EDK27876.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 860

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/907 (41%), Positives = 536/907 (59%), Gaps = 61/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ AD+I+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +  G  YE  +  + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAETIG--YEDLSNQSLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNEALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G       
Sbjct: 419 IDEAGFEKAMEVQRQRAREA------GQFGTDYNATIKVETNTEFCGYTGTEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+  +GE V    +G K  ++ ++TPFYAE+GGQ GDTG
Sbjct: 466 ----------------AGEISALFVEGEEVASLSAGDKAIIILEETPFYAESGGQCGDTG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +  T+D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVEDTQKLGNA-FAHHGELVEGVFAKGDKVEATVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHAALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q              +  +    ++     +++QL
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQA----------NAYEEKLAESAKKAKALEKEIQL 733

Query: 773 IHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K     +   +    +I+    +   I   D+K L++++D  + ++ SGII L+   
Sbjct: 734 LKEKMAAAESANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-LIANV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +A+  
Sbjct: 793 ADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQI-GGKGGGRPDMAQAGGTDVEALPEALKS 851

Query: 892 VASFLKK 898
           V ++L++
Sbjct: 852 VRTWLEE 858


>gi|184157474|ref|YP_001845813.1| alanyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|213156272|ref|YP_002318692.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|215484078|ref|YP_002326303.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|294840176|ref|ZP_06784859.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013113]
 gi|294842075|ref|ZP_06786758.1| alanyl-tRNA synthetase [Acinetobacter sp. 6014059]
 gi|301346311|ref|ZP_07227052.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301510214|ref|ZP_07235451.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|301596473|ref|ZP_07241481.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|183209068|gb|ACC56466.1| Alanyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|213055432|gb|ACJ40334.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|213985935|gb|ACJ56234.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322507789|gb|ADX03243.1| alaS [Acinetobacter baumannii 1656-2]
 gi|323517389|gb|ADX91770.1| alanyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
          Length = 883

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/914 (43%), Positives = 533/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   LMTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +  
Sbjct: 65  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 185 CSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 245 ERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 302

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE T
Sbjct: 303 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEAT 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG 
Sbjct: 363 LIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G     
Sbjct: 422 I-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG----- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 470 ------------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSAT
Sbjct: 512 TGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V 
Sbjct: 571 HLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVT 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  
Sbjct: 631 TELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFK 690

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    
Sbjct: 691 ITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSA 750

Query: 770 LQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ    +   +L      DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 751 LQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 869 FGQVMAALPAWLEQ 882


>gi|294860514|ref|ZP_06798283.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013150]
          Length = 883

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/914 (43%), Positives = 534/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   LMTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +  
Sbjct: 65  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 185 CSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 245 ERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 302

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE T
Sbjct: 303 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEAT 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG 
Sbjct: 363 LIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G     
Sbjct: 422 I-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG----- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 470 ------------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSAT
Sbjct: 512 TGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I +N  V 
Sbjct: 571 HLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAKIIENTAVT 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  
Sbjct: 631 TELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFK 690

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    
Sbjct: 691 ITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSA 750

Query: 770 LQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ    +   +L      DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 751 LQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 869 FGQVMAALPAWLEQ 882


>gi|259418847|ref|ZP_05742764.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345069|gb|EEW56923.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 903

 Score =  947 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/896 (47%), Positives = 576/896 (64%), Gaps = 39/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++  Y  
Sbjct: 20  MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T EFD+
Sbjct: 80  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M +TGPCGPC+EIF+D G
Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWNLVFMQ E+        L   SIDTGMGLER+A +LQ 
Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLFK+LI+AS  VT     G+  V+HRVI DHLRS SFLIA+G+LP+NEGRGY
Sbjct: 259 THDNYETDLFKYLIEASATVTNSDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG T+P+M  L+PAL ++MG+AYPEL Q + LIEET   E+ RF 
Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL LLD     L + ++L G+ AFKLYDT G PLD+ QD L A+G+  +D   F+
Sbjct: 379 KTLDRGLKLLDEASVDLNQGDVLPGETAFKLYDTFGFPLDLTQDALRAKGVE-VDTDGFD 437

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+ ++RA  +GLG     K++F + +  G T+F+GY+                  
Sbjct: 438 AAMKAQKEQSRAGGIGLGDAADVKVYFDIVDAEGTTEFLGYET----------------- 480

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V+ G  VE A  G  V+++ +QTPFY E+GGQ+GDTG    +G 
Sbjct: 481 ------EKAEGQIVALVKDGAKVETAKKGDSVQIILNQTPFYGESGGQVGDTGVLTVEGG 534

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +I+D  KK EG+F+H A V  G +       + +D+  R Q+  NHSATHLLH AL  
Sbjct: 535 AARISDT-KKVEGLFLHIAEVTEGEISVGSGAAMEVDHTRRSQIRANHSATHLLHEALRN 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    + LRFD +H+K ++  +L  I   VND I QN PV TRIM  +DA
Sbjct: 594 ALGEHVAQKGSLNAAERLRFDFSHNKAVSQEDLTKIASEVNDFIRQNSPVSTRIMTPDDA 653

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY + VRVVS+         DG  +S  LCGGTHV  TG+I    I+ +
Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRADTGKGADGDTYSIELCGGTHVKQTGDIGTFVILGD 713

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL  +  ++  +A  LK    +V+ R++ + +E + L   
Sbjct: 714 SASSAGVRRIEALTGAAAFDHLEREAARMAEVAGALKAQSADVMDRLKALMDERKALHNE 773

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K Q+ +           +I+   F+   +  V  K+L+ ++DA ++KI SG+I+L+
Sbjct: 774 ISNLKQQIAMGGGSDGGAETKEISGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
               + K +V   VT+DL    +AVD+ + +   +GG GGGGRP MAQ GG + + 
Sbjct: 834 A-EDDGKVAVAAGVTDDLTGDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSG 888


>gi|260557541|ref|ZP_05829756.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260409167|gb|EEX02470.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 883

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/914 (43%), Positives = 533/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   LMTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +  
Sbjct: 65  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 185 CSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 245 ERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 302

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE T
Sbjct: 303 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEAT 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG 
Sbjct: 363 LIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G     
Sbjct: 422 I-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG----- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 470 ------------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSAT
Sbjct: 512 TGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V 
Sbjct: 571 HLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVT 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  
Sbjct: 631 TELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFK 690

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    
Sbjct: 691 ITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSA 750

Query: 770 LQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ    +   +L      DL      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 751 LQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S++  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLIASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q +A + ++L++
Sbjct: 869 FGQVMAALPAWLEQ 882


>gi|116749953|ref|YP_846640.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|205830235|sp|A0LLA3|SYA_SYNFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116699017|gb|ABK18205.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 885

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/916 (40%), Positives = 524/916 (57%), Gaps = 52/916 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF + GH ++ SSS+IP +DP+L+FTN+GMV FK  F G+EK  Y   
Sbjct: 1   MKASEIRKAFLDFFAQRGHSVVKSSSVIPHDDPSLLFTNAGMVQFKRTFLGEEKRPYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE A++ AW  LT++  L 
Sbjct: 61  ATSQKCMRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAVEYAWRFLTEDMGLP 120

Query: 122 QRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + +LY T+++ D        EEA   W +   L AD+I+   T DNFWSM +TGPCGPCS
Sbjct: 121 REKLYATIHEGDSEMRLGPDEEARGFWARY--LPADRILTFPTKDNFWSMGDTGPCGPCS 178

Query: 174 EIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           EI  DQG  +  G P      + +R++E+WNLVFMQF ++       LPK SIDTGMGLE
Sbjct: 179 EILIDQGAHVGCGKPDCRPGCDCDRFLELWNLVFMQFNRKEDGTMEPLPKPSIDTGMGLE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R+A V+Q+  +NYD DLF  +     +++G +Y  +    V+ +VI DH R+++FLI DG
Sbjct: 239 RVAAVIQKVPSNYDTDLFAPMRAKIAELSGYRYGTDPEKDVSVKVIADHGRAAAFLIGDG 298

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ + R LG   P +  +  A+   M  AYPEL++++  I  
Sbjct: 299 ALPSNEGRGYVLRRVLRRALRHGRFLGLDRPFLSEVAVAVMESMQDAYPELLESRNFITR 358

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + +E+ERF +TLD GL LL   +  L  +    + G + FKLYDT+G P+DI+ D+   
Sbjct: 359 VILNEEERFNETLDNGLRLLQNEIRRLRDEGAGTIPGALIFKLYDTYGFPIDIITDMARD 418

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
                +D   F   +E+Q+ ++R H  G G     + +  L  +  +T+F+GYD L    
Sbjct: 419 LDFK-VDEAGFADLMEKQKEQSRMHWKGSGEREVSEAYRQLSAEGVSTRFVGYDTL---- 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S + A+V+ G+ VEEA +G  VEVV  +TPFY  AGGQ
Sbjct: 474 -------------------SAQSTIAALVRDGQAVEEAPAGTDVEVVTSETPFYGAAGGQ 514

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G  +G   R+ ++D  K    + VH   VE G LR   ++ L +D   R   +++H
Sbjct: 515 VGDQGVIVGPSSRVIVSDTLKLPGDLIVHVGKVESGRLRVGETVRLEVDQALRGDTALHH 574

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH  L  +LG HV Q GS + PD LRFD TH   I+  EL  IE  VN+ I  N 
Sbjct: 575 TATHLLHSVLRRVLGDHVKQAGSMVAPDRLRFDFTHFAAISRDELAEIERLVNEQIRVNR 634

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            +  R MN ++A+ +GA AL   KY DRVR+V +        S  LCGGTH   TG+I L
Sbjct: 635 DLQVREMNLDEALKTGAMALFEEKYGDRVRMVEIPG-----FSRELCGGTHTHRTGDIGL 689

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             +  E SI +G+RRIEA+ G+RA  +L  Q   L   A  LK     V  RVE++    
Sbjct: 690 FVVTQEMSIASGVRRIEALAGRRALDYLGRQQSVLHQAAGLLKAGPFEVAERVEKLLANQ 749

Query: 768 RKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++++      K  L  +          ++  V  +   +   D K L+ + D  ++++ S
Sbjct: 750 KQMEKELEALKSSLTSKRSADLLEQAEEVGGVKVLVMRVEADDPKALREMNDRFKERLSS 809

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+ +L G  +  KA +L+ VT DL  R +A +L +   K + GG GGGRP MAQ+GG   
Sbjct: 810 GVTVL-GAHQGDKAFLLVGVTPDLTSRVHAGNLIKEIVKTI-GGSGGGRPDMAQAGGNRP 867

Query: 883 NKADQAIAGVASFLKK 898
            K   A+      L++
Sbjct: 868 EKLQDALDLARKLLRE 883


>gi|332140622|ref|YP_004426360.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550644|gb|AEA97362.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 865

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/901 (42%), Positives = 536/901 (59%), Gaps = 48/901 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F+ +F+ +GH+ + SSSL+P +DPTL+FTN+GM  FK+ F G EK  Y    
Sbjct: 4   STADLRNKFINYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDTFLGTEKRSYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+ LT E  L +
Sbjct: 64  SSQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEAIEFAWNFLTSEVGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L +TVY ED+EAF +W+   G+  +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G  
Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183

Query: 183 IPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GG PG   E+G+R+IEIWNLVFMQF +Q       LPK SIDTGMGLER++ +LQ   
Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF++LI+++  + G +   N   + RVI DH+RS SFLI DG++P+NEGRGYVL
Sbjct: 244 SNYEIDLFQNLIKSAASIVGTEDLENK--SLRVIADHIRSCSFLICDGVMPSNEGRGYVL 301

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   LG  +     L+ +L  EMG AYPEL+    +IE+ LR E+E+F KT
Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLANEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L RG+ +L+  L+ L  D +  GDV FKLYDT+G P D+  D+     L  ID   F   
Sbjct: 362 LARGMAMLNDTLASLEGDTV-PGDVVFKLYDTYGFPTDLTNDVAREHELK-IDEEGFEA- 418

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
                +     +    +      + S       T F GY  + G                
Sbjct: 419 -----AMQAQRARAQQASNFGADYNSKLAIDHTTSFTGYTDVEG---------------- 457

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  ++     VE+   GQ+  VV D TPFYAE+GGQ GD G         
Sbjct: 458 -------QANVVELIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +TD QK     F H  I  +G +    +    ID  NR  +  NHSATHLLH AL  IL
Sbjct: 511 IVTDTQKMGNA-FAHKGIA-KGSVSKGDTATAAIDSANREAIKKNHSATHLLHAALREIL 568

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G HV+Q GS +    +RFD +H + +T+ +L  IE  VN  I  N  + T +M+ E+A A
Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTTEQLAEIERRVNQEIRANHSLATELMDLEEAKA 628

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           SGA AL G KY+++VRVV++     G  S  LCGGTHV+ TG+I L  I SE+ I +G+R
Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVARTGDIGLFKITSEAGIASGVR 683

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKL 779
           RIEA+TG++A   +  Q   L SL+S LK    NV+ RV  +  + ++L+     AK+KL
Sbjct: 684 RIEAVTGEQAIEVVQTQQATLSSLSSLLKTDSQNVLERVVSLQNQTKELEKALNSAKQKL 743

Query: 780 QLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                        ++N +  +I     V++K L+S+MD ++ +I  GI++L G++   K 
Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANNAKV 802

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++  VT++L D+  A +L    A  + GG GGGRP MAQ+GG       QA+  V  +L
Sbjct: 803 NLIAGVTKNLTDKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDKPENLGQALDSVNVWL 861

Query: 897 K 897
           +
Sbjct: 862 Q 862


>gi|326794049|ref|YP_004311869.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326544813|gb|ADZ90033.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 871

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/910 (42%), Positives = 554/910 (60%), Gaps = 53/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S +R +FL +F+   H+++ SSSLIP NDPTL+FTN+GMV FK++F G +K  Y  
Sbjct: 1   MKS-SELRQSFLSYFESKQHQVVESSSLIPGNDPTLLFTNAGMVQFKDVFLGTDKRNYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK   L
Sbjct: 60  ATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIGYAWEFLTKVAKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            Q +L +TVY ED+EAF +W K  GL  +KIIRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PQEKLLVTVYAEDDEAFDIWHKEIGLPKEKIIRIGDNKGARYASDNFWQMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           E+F+D GE I GG PGS  E+G+R+IEIWN+VFMQF +    +   LPK S+DTGMGLER
Sbjct: 180 EVFYDHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSANGDMAPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQ   +NY+IDLF++LI+AS    G     +   + RVI DH+RS SF+I DG++P
Sbjct: 240 IAAILQGVHSNYEIDLFQNLIKASANAVGTNDLESQ--SLRVIADHIRSCSFMIVDGVVP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+ AL +EMG AYPEL + K  +   L 
Sbjct: 298 SNEGRGYVLRRIIRRAIRHGNKLGQKGVFFHTLVEALDSEMGEAYPELRKLKERVASILL 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E+F KTLD+G+ +L+  +S LG  +++ G+  FKLYDT+G P D+  D+     L  
Sbjct: 358 KEEEQFAKTLDQGMRILEEAISELGDSKVIPGETVFKLYDTYGFPADLTNDVARENELE- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F  A+EEQR+RAR+ S      + +    S       T+F GY  L G       
Sbjct: 417 IDEAGFEAAMEEQRARARSASNFSMDMSGDVSIDS------ETEFTGYTELEGDC----- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                             +V+A++  G  V+E  +GQ   V+   TPFY E+GGQ GD G
Sbjct: 466 ------------------VVEALIVDGSNVDEIQAGQDAVVLLKSTPFYGESGGQAGDQG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G G   ++++  K+ +   +H  +++ G ++   ++   +D   R   ++NHSATHL
Sbjct: 508 WLRGPGA-FKVSNTAKQGKA-HLHQGVLKEGAIKVGDTVAAQVDRSMRNATALNHSATHL 565

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  I+G HV+Q GS +  + LRFD +H + +T+AE++ +ED VN+ I  N  V+T 
Sbjct: 566 VHEALRRIVGDHVNQKGSLVNAERLRFDFSHFEGLTNAEIEQVEDMVNEQIRLNHEVITE 625

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ + A   GA AL G KY+  VRV+++    G  +S  LCGGTHV  TG+I L  IV+
Sbjct: 626 IMDVDSAKEKGAMALFGEKYDSEVRVLTM----GADYSIELCGGTHVKRTGDIGLFKIVT 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AG+RRIEA+TG+ A   +   +  L  +A+ +K ++ N + +V  + ++ R LQ 
Sbjct: 682 EGGIAAGVRRIEAVTGKAAIDAVRQTENALNGVAAVVKGNKENALEKVSALNDQARALQK 741

Query: 773 I--HAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV 828
                K KL          +  D+     ++++V  D K L+ ++D L+ K++S +I+L 
Sbjct: 742 EIDALKSKLAAAAGSDLAGQAIDIEGGKLLVAQVESDPKALRDLLDQLKSKLESAVILLA 801

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT++L  +  A DL ++ A ++  G GGGRP MAQ+GG N      A
Sbjct: 802 AV-NDGKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGKGGGRPDMAQAGGNNPAALPDA 859

Query: 889 IAGVASFLKK 898
           +  V +++K+
Sbjct: 860 LEQVPAWVKE 869


>gi|242238445|ref|YP_002986626.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242130502|gb|ACS84804.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 875

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 553/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FFQ  GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAILNAWELLTGPQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+EA+ +W  + G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYATDDEAYDIWANVVGIPQERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG PGS  E+G+RYIEIWNLVFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+ID+F+ LI  + +V G +   N   + RVI DH+RS +FLIADG++
Sbjct: 243 RVSAVLQHVNSNYEIDVFRTLIAEAAKVVGTRDLNNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL   + ++E  L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIDVMGSAADELRTQQTVVELAL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE+E+F +TL+RGL LLD  +  L + + L+G+ AF+LYDT+G PLD+  D+   RGL 
Sbjct: 361 KSEEEQFARTLERGLSLLDEEIRTL-QGDTLSGEAAFRLYDTYGFPLDLTADVCRERGLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RAR  S G G+      + SL     AT F GYD          
Sbjct: 420 -VDETGFEREMEAQRQRAREAS-GFGAD-----YNSLIRVDSATTFCGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ ++GE V+E  +G +  V+ D+TPFY E+GGQ+GD 
Sbjct: 463 -------------HAEQRSHVVALYRKGEPVQEISAGDEAVVILDETPFYGESGGQVGDQ 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G      + D QK     F H   + +G LR   ++   +D   R ++ +NHSATH
Sbjct: 510 GVLKGVSAYFVVDDTQKYGRA-FGHVGKLTQGSLRVNDAVDAVVDDVRRDRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +    LRFD +H + +   E++ +ED VN  + +NLPV T
Sbjct: 569 LLHAALRQVLGTHVAQKGSLVNDRYLRFDFSHPEAMKPDEIRQVEDIVNAQVRRNLPVDT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  +DA A GA AL G KY+D+VRV+++     G  S  LCGG H   TG+I L  IV
Sbjct: 629 AIMAIDDARAKGAMALFGEKYDDQVRVLTM-----GDFSIELCGGIHARRTGDIGLFRIV 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + L  Q + L+ +   +K    N++ +V  + E  R L+
Sbjct: 684 SESGTAAGIRRIEAVTGEGAVASLHHQSDLLQDVTLLVKGDANNLIEKVRSLLERNRGLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          I  V  +   +S V+ K L++++D L+ ++ S +I+
Sbjct: 744 KELLQLKEQQAAQESSSLAGKAKDINGVKLLVTQLSNVEPKMLRTMVDDLKNQLGSAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  I  E K S++  VT+ L +R  A +L    A  + GG GGGRP +AQ+GG + +   
Sbjct: 804 LSTIV-EGKVSLIAGVTQGLTERVKAGELVGFVANQV-GGKGGGRPDLAQAGGSDADALP 861

Query: 887 QAIAGVASFL 896
            A+A V +++
Sbjct: 862 SALASVEAWV 871


>gi|254513877|ref|ZP_05125938.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219676120|gb|EED32485.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 867

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/903 (41%), Positives = 541/903 (59%), Gaps = 46/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F+ + H+ +PSSSL+P +DPTL+FTN+GM  FK++F G E   Y   
Sbjct: 1   MKTGEIREAFLAYFESHDHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAESRPYHRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI+ AWD LT E  L 
Sbjct: 61  VSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKSQAIRFAWDFLTVELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA ++W +  G  A++I R+   DNFW M +TGPCGPCSE+F+D GE
Sbjct: 121 KERLWVTVHLSDDEAERIWIEEIGFPAERISRL-DEDNFWQMGDTGPCGPCSEVFYDHGE 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQ+ +    +   LPK S+DTGMGLER+A +LQ  
Sbjct: 180 DVPGGPPGSPDDDLDRYIEIWNLVFMQYNRSADGQMTPLPKPSVDTGMGLERIAAILQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F+ LI A+ +V G         + RVI DH+RSS+FLI DG+LP NEGR YV
Sbjct: 240 HSNYEIDVFQALIAAAAEVVGATDL--EASSLRVIADHIRSSAFLIIDGVLPGNEGRSYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRA+ +   LG TE     L+  L  +MG  YPEL   +  IEE +R E+E+F +
Sbjct: 298 LRRIMRRAIRHGNKLGATELFFSKLVAPLAAQMGDFYPELRAQQARIEEVIRGEEEQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++G+ +LD  L+ L + +++ GDV FKLYDT+G P+D+  DI   R  + +D+  + +
Sbjct: 358 TLEQGMEILDEALADL-QGDVIPGDVVFKLYDTYGFPVDLTNDIARERNFS-LDMAGYER 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++ QR R++        G     + S     G T F GY+ + GS              
Sbjct: 416 AMQVQRERSKE------GGGFSVDYNSTLTLEGETVFTGYEHVAGS-------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V A+++  E V +   G+   V+ DQTPFY E+GGQ GDTG     G+ 
Sbjct: 456 ---------AQVVALLRDAEQVMQLAEGESGVVILDQTPFYGESGGQAGDTGYLSAQGLS 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++TD  K A+G  +HH  V +G +    +L   ID + R+   +NHSATHLLH AL   
Sbjct: 507 LEVTDTTK-AQGHHLHHVKVLQGTVSVGDTLDCRIDNEVRQNTRLNHSATHLLHAALRNE 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD ++ + ++  +L+++ED+VN  I  N  V T++M  +DA 
Sbjct: 566 LGDHVTQKGSLVDAQRLRFDFSNPEAMSDEQLRAVEDSVNAQIRANTDVHTQLMTMDDAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+S+  +     S  LCGGTHV  TG+I LL I+SE  + +GI
Sbjct: 626 NAGAMALFGEKYGDEVRVLSMGQDG---FSVELCGGTHVQRTGDIGLLRIISEGGLASGI 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG  A +H+   D  L  +   ++ +  NV  +V  +    R L+   A+ K +
Sbjct: 683 RRIEAVTGANALAHMRSVDGALAGVCDAVRGTTDNVADKVAALRSANRDLEKELARLKQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  ++  +  ++  +   D   L+ +MD  + K+ S +I+L  +  + K
Sbjct: 743 LASSAGSDITASAIEVDGIKVLATAVDGADPGALRGIMDQCKSKLGSAVILLAAV-NDDK 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +++  VT+DL +R  A DL +  A  LGG GG GRP MAQ GG        A+  V ++
Sbjct: 802 VALVAGVTKDLTERVRAGDLMKEFAGRLGGKGG-GRPDMAQGGGTEPALLSAALEDVPAW 860

Query: 896 LKK 898
           + +
Sbjct: 861 VAQ 863


>gi|296313800|ref|ZP_06863741.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839624|gb|EFH23562.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 873

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/913 (41%), Positives = 531/913 (58%), Gaps = 57/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 359 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L  +   T+F GY   +      
Sbjct: 417 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYEGQDTEFKGYSERQT----- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD
Sbjct: 464 ------------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 566 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 858

Query: 886 DQAIAGVASFLKK 898
            + +A V  ++K+
Sbjct: 859 PEMLASVEGWVKE 871


>gi|162147971|ref|YP_001602432.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542589|ref|YP_002274818.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786548|emb|CAP56130.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530266|gb|ACI50203.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 881

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/890 (47%), Positives = 579/890 (65%), Gaps = 31/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS  + IR  FL++F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 1   MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW L+T+ F L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL  TVY +DEEA  LW+K++GL  ++IIRI T DNFW M +TGPCGPCSEIFFD  
Sbjct: 121 PRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFWRMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R++EIWNLVFMQF +     R  LP+ SIDTGMGLER A ++Q 
Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI AS + TG   +G    +HRV+ DHLRS+SFLIADG+LP+ +GRGY
Sbjct: 241 KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G  E +   L+PAL  +MG+AYPEL+QA+ LI ET+R E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHMMGTRETVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL    + LG  + L GDVAFKLYDT G PLD+ QD L       +D+  F+
Sbjct: 361 AMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDLTQDALRGSS-HDVDVTGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ QR RARA   G G   TE +WF  ++++GA++F+GY                   
Sbjct: 420 RAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGYAT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + ++AIV  G  V EA +G ++ ++ +QTPFY E+GGQ+GDTG     G+
Sbjct: 463 ------EQADAEIQAIVTDGRSVTEAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R+ +TD QK+   + VH+  V  G +R   ++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 517 RIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS   PD LRFD++  +P+T  E+  +E  VN  I +N PVVTR M++E+A
Sbjct: 577 RLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A GA AL G KY D VRVV +   +      S  LCGGTHV+ TG+I L  I SE+ + 
Sbjct: 637 VAQGAMALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVS 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           AGIRRIEA+TG+ A    +  +++L  +A+ L+VS      R+  I +E +  + Q+   
Sbjct: 697 AGIRRIEAVTGKSAEQAAVATEQRLGQMAAMLRVSAAEAPERLAVILDERKVMERQISDL 756

Query: 776 KRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +RKL     D      I  + F++  + ++ ++ELK + D+L++++ SG++ LV  + E 
Sbjct: 757 QRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQQVGSGVVALVSTA-EG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           K SV++ VT DL DR +AV+L RL++  +GG GGGGR  MAQ+GGP+  +
Sbjct: 816 KGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPDIAR 865


>gi|126667522|ref|ZP_01738492.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627948|gb|EAZ98575.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 876

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 548/912 (60%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FLE+F + GH ++PSSSL+P +DPTL+FTN+GM  FK++F G+E+  Y   
Sbjct: 1   MKTAELRQAFLEYFNQQGHAIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREQRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWNFLTSEQWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L+ITVY ED+EAF +W +  G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKTKLWITVYAEDDEAFDIWNQEIGVPAERIVRIGDNAGGRYSSDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLE
Sbjct: 181 SEIFFDHGPDVAGGPPGSPDEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NY+IDLF+ L++A+  V G         + RV+ DH+RS  FLI DG++
Sbjct: 241 RVTAVLQGVHSNYEIDLFQDLLKAASDVLGGV--ATTEASLRVVADHIRSCCFLIGDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRG+VLRRI+RRA  +   LG   P    L+ AL   MG A+P+L+ +   IE+ L
Sbjct: 299 PSNEGRGFVLRRIIRRAARHGNKLGANGPFFYKLVGALVELMGEAFPQLVSSHKQIEKVL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTLD GL LL+  ++ L K +++ G+  F LYDT+G P+D+  DI   RGL 
Sbjct: 359 LQEEEQFVKTLDNGLRLLEQDIAEL-KGDVIPGETVFALYDTYGFPVDLTNDIARERGLT 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + +A+E QR RARA S        E +        G T+F GY           
Sbjct: 418 -LDYQGYEKAMEAQRERARAASKFGIDYNAESLKLE-----GVTEFSGYQN--------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                     ID    + S++      G   + A +G +  +V ++TPFYAE+GGQ+GDT
Sbjct: 463 ----------IDGHERIRSVIV-----GSEHKNAEAGDEAIIVLERTPFYAESGGQVGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G     G R Q+TD +K+     +H   V  G L   + +   ID++ R +   NHSATH
Sbjct: 508 GLLTWSGGRFQVTDTRKEGNN-HLHIGTVVEGELFPGLEVDARIDHERRERTKRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HVSQ GS + PD LRFD +H + +++A+L+ IE  VN  I +N  V T
Sbjct: 567 LLHAALRKVLGEHVSQKGSLVDPDKLRFDFSHLEAVSAADLQEIERQVNQQILENTSVAT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            + + E A A GA AL G KY D VRV+S+  +    +S  LCGGTHV+ TG+I L+ I 
Sbjct: 627 EVTDMEQAQAKGALALFGEKYGDSVRVLSMGSDG---YSVELCGGTHVNRTGDIGLMRIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG  A   +   +  L+  A  +K S+ ++V +V++  +  R+L+
Sbjct: 684 SESGIASGVRRIEAVTGFGALEWVGSAERTLREAARLVKGSRESLVEKVQQTLDRNRQLE 743

Query: 772 LIH--AKRKLQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K KL  +       S  ++A +  ++  +   D + L    D L+ K+  G+++
Sbjct: 744 KEIDGLKAKLASSAGSDLASSAVEVAGLRVVAAEMPGADRQALMETADQLKNKLGEGVVV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  + ++ K +++  VT+    R  A D+ +     L  G GGGRP MAQ GG + ++  
Sbjct: 804 LASV-EDGKVTLVSGVTKSATGRVKAGDIMKHLCAQL-DGKGGGRPDMAQGGGNDASRLT 861

Query: 887 QAIAGVASFLKK 898
           + +AGVA +++K
Sbjct: 862 EVLAGVAGWVEK 873


>gi|169796616|ref|YP_001714409.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|205829964|sp|B0VAI3|SYA_ACIBY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830054|sp|A3M3W2|SYA_ACIBT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830056|sp|B2HWK7|SYA_ACIBC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169149543|emb|CAM87432.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|193076886|gb|ABO11606.2| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 878

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/913 (43%), Positives = 532/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSAL 746

Query: 771 QLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L      DL      IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 865 GQVMAALPAWLEQ 877


>gi|222054217|ref|YP_002536579.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221563506|gb|ACM19478.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 876

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/906 (42%), Positives = 549/906 (60%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FF++ GH ++ SS+L+P NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIREKFFRFFEERGHTVVESSNLVPRNDPTLLFTNAGMNQFKDLFLGLEKRGYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AWD LT+E  LD
Sbjct: 61  CSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWDFLTRELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA ++W K  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KNRLYVTVYTDDDEAAEIWNKQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWN VFMQF +  K     LPK S+DTGMGLER+ TV+Q 
Sbjct: 181 GTGCGSPTCEVGCDCDRYMEIWNNVFMQFNRDAKGNMTPLPKPSVDTGMGLERICTVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+++G +Y  +  + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHVEKLSGKRYRQDEKDDVSMRVIADHARAITFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG+ EP++  ++ A+   MG AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGFAEPVLYRIVDAVNAMMGDAYPELLEREEYVKKVIHAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+  ++ L K    +L G+V F+LYDT G P+D+  DI+   GL  ID 
Sbjct: 361 FMETLDRGLSILNEEVALLKKQAGTVLPGEVVFRLYDTFGFPVDLTADIVANEGLT-IDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G     +I+ +L  K   + F+GYD              
Sbjct: 420 DGFVLCMEKQRLQARENWKGSGEEGLAEIYKNLHGKGIRSAFVGYDE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  ++++G  V EAV G++VEVV   TPFY  +GGQ GD G   
Sbjct: 467 ----------QTAYSPITVLLREGREVTEAVVGEEVEVVVGTTPFYGASGGQAGDIGVIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                L++    K    + VH  +VE+G ++   +  L +  + R   + NH+ATHLL  
Sbjct: 517 TGNAHLKVVGTSKPFADLTVHRVLVEKGTVKVGDAADLKVLTRERNATARNHTATHLLQS 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q GS +T D LRFD TH   + + EL+ +E+ VN  I +N  V +  M 
Sbjct: 577 ALRQVVGDHVKQAGSLVTADRLRFDFTHFSAMAADELRRVENIVNGYIMENSDVSSVEMA 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+ SGA AL G KY DRVRVV       G  SS LCGGTHV + G+I    IVSE+ 
Sbjct: 637 AAEAMQSGATALFGEKYGDRVRVVR-----VGEVSSELCGGTHVQAAGDIGFFKIVSEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A  ++   +++ K LA+ +K   G V+ RVE +    ++LQ    
Sbjct: 692 IAAGVRRIEAVTGSGAIEYVQQLEDEQKHLATLIKAEGGGVIDRVERLLARQKELQREVE 751

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + +LN            +   +  ++  +   D K L+ + D+L+ ++QSG+I+L G 
Sbjct: 752 ELQSRLNASKSADLLAGVRESNGIKILATRVETGDPKGLRDLSDSLKDRLQSGVIVL-GC 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +   KA++L+ VT+DL DR  A D+ +  A ++ GG GGG+P +AQ+GG      D+A+ 
Sbjct: 811 AAAGKANLLVAVTKDLTDRCKAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEALE 869

Query: 891 GVASFL 896
                +
Sbjct: 870 AAYKII 875


>gi|329902133|ref|ZP_08273037.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548856|gb|EGF33484.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 869

 Score =  946 bits (2444), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/909 (42%), Positives = 538/909 (59%), Gaps = 57/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF+  GH ++ SS LIP NDPT++ TNSGMV FK++F G ++  Y  
Sbjct: 1   MKST-EIRAKFLKFFESKGHTIVRSSPLIPGNDPTMLLTNSGMVQFKDVFLGTDQRAYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  + L
Sbjct: 60  ATSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTNVYLL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY ED+EA+ +W    G+  ++IIRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PKEKLWVTVYHEDDEAYAIWANEIGIPTERIIRIGDNKGARYASDNFWQMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS+ E+G+R+IEIWNLVFMQF +  +     LPK  +DTGMG+ER
Sbjct: 180 EIFYDHGPEIWGGPPGSAEEDGDRFIEIWNLVFMQFNRDEQGNMPRLPKPCVDTGMGMER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQ   +NY+IDLF++LI+A+ + TG    G+N  + +VI DH+R+ +FLI DGI+P
Sbjct: 240 LAAILQHVHSNYEIDLFQNLIKAAARETGTTDLGDN--SLKVIADHIRACAFLIVDGIIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           A+EG GYVLRRI+RRA+ +   LG  +P    L+  L  EMG AYPEL QA + +E+ LR
Sbjct: 298 ASEGHGYVLRRIIRRALRHGHKLGQAKPFFYLLVKDLVIEMGEAYPELTQAAVRVEQVLR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ERFG+TL+ G+ +L+  L  L     L+G  AF LYDT G PLD+  DI   R +  
Sbjct: 358 QEEERFGETLEHGMKILEAAL--LVTPTQLDGQTAFTLYDTFGFPLDLTADICRERKVE- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   FN A+E+QR+ ARA      +   E            T+F+GYD L         
Sbjct: 415 LDEAGFNVAMEQQRTTARAAGKFKMAAAVE-------YSGDKTRFVGYDALE-------- 459

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S+ V A+   G  V    +GQ+  VV D TPFYAE+GGQ+GDTG
Sbjct: 460 ---------------QSAGVIALYVNGTAVPRMTAGQEGIVVLDVTPFYAESGGQVGDTG 504

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G  ++  + D  +    +F HH  +  G L     +   +D   R +   NHSATHL
Sbjct: 505 MLTGAAVQFHVADTLRIQSEVFGHHGTLAGGTLSVGDKVAANVDPVARGRTIRNHSATHL 564

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG+HV+Q GS +  D  RFD +H+ P+T+ E++ +E  VN  I  N+    R
Sbjct: 565 MHKALREVLGAHVAQKGSLVDTDKTRFDFSHNGPLTADEIRQVELIVNREILANVATEAR 624

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+  GA AL G KY D VRV+ +        S  LCGG HV  TG+I L  I +
Sbjct: 625 VMPYDDAVKYGAMALFGEKYGDEVRVLGIGS------SKELCGGVHVDRTGDIGLFKITA 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRR+EA+TG+ A + +     +++  A+ LKV    +  R+ ++ ++ R L+ 
Sbjct: 679 ESGVAAGIRRVEAVTGEGALALVQALSRQMQDAAAILKVQPDELSQRIGQVQDQVRSLEK 738

Query: 773 I--HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L  N  D        I  +  ++ ++   D   L+  MD L+ K+++  I+L
Sbjct: 739 DVSALKSRLAANQGDELLGQAVDIKGIKVLAAVLLGADVAALRVTMDKLKDKLKTAAIVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K S++  VT D   R  A +L    A  + GG GGGRP MAQ+GG + +    
Sbjct: 799 AAV-NDGKVSLIAGVTADATSRIKAGELVNFVALQV-GGKGGGRPDMAQAGGTDPSGLAA 856

Query: 888 AIAGVASFL 896
           A+ GV  ++
Sbjct: 857 ALLGVPGWV 865


>gi|253574903|ref|ZP_04852243.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845949|gb|EES73957.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 874

 Score =  946 bits (2444), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/909 (39%), Positives = 523/909 (57%), Gaps = 53/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF   GH++ PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFASKGHKIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRIKPENPRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEAFKLW +  G+ AD+II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPDRLSVTVYPEDEEAFKLWNEKIGIPADRIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           GE              E ER++E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 174 GEAYGDLSDPECYPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  +N+D DLF+ +IQ +  + G+ Y    ++ V  +VI DH+R+ +F +ADG+LP+N
Sbjct: 234 LQDVNSNFDTDLFQPIIQKTASLAGVTYGAAEDSDVALKVIADHIRTVTFAVADGVLPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ Y +L+G  +P M  L+  +   MG+ YP+++  +  IE+ +R+E
Sbjct: 294 EGRGYVIRRLLRRAVRYGKLIGLDKPFMFSLVETVGDIMGTYYPDVVIKREFIEKVIRTE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L  + +         ++GD AFKLYDT+G PLD+ +D     GL+ 
Sbjct: 354 EERFHETLSDGLAILADISAEAKAQGRTQISGDDAFKLYDTYGFPLDLTEDFAAEHGLS- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EEQR RARA     GS   +     L +    T+F+GY+ L         
Sbjct: 413 VDREGFEAAMEEQRERARAARHESGSMMVQG--GVLADFTTKTEFVGYNELE-------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V++ + AIV     V+    GQ  +V+   TPFYAE+GGQ+ D G
Sbjct: 463 ---------------VTTSIVAIVVDDAFVDTLGEGQSGQVILASTPFYAESGGQVSDQG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D     +  + K   G  VH   V+ G LR    +  ++D + R     NH+ATHL
Sbjct: 508 TIHNDSASATVEGLFKAPHGQHVHQVTVKTGELRVGAEVTASVDREQRSHTVKNHTATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS + P  LRFD +H   I+  EL  IE  VN+ I   LPV T 
Sbjct: 568 LHKALKETLGEHVNQAGSLVEPQRLRFDFSHLGSISPEELAEIERRVNEQIWNALPVTTS 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +   ++A A GA AL G KY D VRVV V     G +S  LCGG HV+++ EI L  IVS
Sbjct: 628 LKPIDEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVNNSAEIGLFKIVS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G+RRIEA+TG+ A   + GQ + LK  A  LK +  +V  RVE ++++ ++L  
Sbjct: 683 ESGIGSGVRRIEAVTGRGAYLFMDGQLDLLKQAAGLLKANVNDVPKRVEGLFQQLKELSR 742

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   + +L+V +          +     ++  +       L+++ D L+ K+   +++L
Sbjct: 743 ENESLQSKLSVIEAGELTSQVVSVGQTKLLAARVQAGSMDALRTLADELKVKLPDAVLVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              +++K   V++V  E++    +A  L +  A V GGGGG GRP MAQ+GG + +K D+
Sbjct: 803 GAPNEDKVNFVVVVPKEEVARGLHAGKLVKEIAAVCGGGGG-GRPDMAQAGGKDASKLDE 861

Query: 888 AIAGVASFL 896
           A+   A ++
Sbjct: 862 ALKVAAEWI 870


>gi|241759977|ref|ZP_04758075.1| alanine--tRNA ligase [Neisseria flavescens SK114]
 gi|241319431|gb|EER55861.1| alanine--tRNA ligase [Neisseria flavescens SK114]
          Length = 874

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 526/911 (57%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+   K   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 359 LKNEESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNI 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 417 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G +  VV D TPFYAE+GGQ+GD
Sbjct: 464 ------------------ESKVLALYKDGEQVNELNEGDEGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFAGENRFEVHDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 566 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 741 LEKELARAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKL 858

Query: 886 DQAIAGVASFL 896
            + +  V  ++
Sbjct: 859 PEVLNSVKDWV 869


>gi|330811260|ref|YP_004355722.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379368|gb|AEA70718.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 873

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/913 (42%), Positives = 542/913 (59%), Gaps = 57/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS Q  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERISAVLQHVHSNYEIDLFQSLLSASAQAIGCT--NDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLKILEQDLAEL-KGNVVPGDVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   AT+F GY    GS    
Sbjct: 417 T-LDEEGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATEFTGYAGTTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + AI + G+ V+    GQ+  +V D+TPFYAE+GGQ+GD
Sbjct: 466 -------------------AKIVAIYKDGQSVDILSEGQEGVIVLDKTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  + D  K   G F+HH ++  G L     +   +D   R   S+NHSAT
Sbjct: 507 SGYLQAGSSRFDVRDTTK-TGGAFLHHGVLASGSLMIAAPVAAHVDADVRHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +LK++E+ VN  I +N PV 
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEEIVNAEIRKNSPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + E A   GA AL G KY D VRV+S+     G  S  LCGG H + TG+I L+ I
Sbjct: 626 TEETDIETAKRKGAMALFGEKYGDSVRVLSM-----GDFSVELCGGIHANRTGDIGLMKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           +SE  + +G+RRIEA+TG  A ++L   +E+LK  A+ +K S+ N++ ++  + E  R  
Sbjct: 681 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLIKGSRDNLIDKLSAVLERNRLL 740

Query: 769 KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D        +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 741 EKQLEQLQAKAASAAGDDLSAQAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E+K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 801 LL-GSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGTDVGAL 858

Query: 886 DQAIAGVASFLKK 898
           D A+A   +F+++
Sbjct: 859 DAALAQTVAFVEQ 871


>gi|54294686|ref|YP_127101.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens]
 gi|59798486|sp|Q5WVQ2|SYA_LEGPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53754518|emb|CAH16002.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 860

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/905 (42%), Positives = 552/905 (60%), Gaps = 53/905 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL +F + GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E   YQ 
Sbjct: 1   MKS-SEIRQAFLNYFVQRGHQLVASSSLIPSNDPTLLFTNAGMVQFKDLFLGLETRPYQR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +
Sbjct: 60  AVTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G
Sbjct: 120 PAERLWVTVYKEDLEAEGIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q 
Sbjct: 180 PEVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGCLHPLPKPSVDTGMGLERLAAVIQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ID F++LI+A  Q+ G   + N+  + +VI DH+RS SFLI DG+LP+NEGRGY
Sbjct: 240 VHSNYEIDSFQYLIKAIAQL-GQDIDLNH-TSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F 
Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL   + +L K + L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FN
Sbjct: 358 RTLEQGLRLLQDHIKNL-KGQELSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++QR +++A S           + ++ +    ++F GY+                  
Sbjct: 416 QLMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG   
Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSLNKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEF 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+ D QK  + + VH+  V +G L  ++S+   +D+  R  + +NH+ATHLLH AL  
Sbjct: 507 SFQVDDTQKVGQAV-VHYGEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKQ 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+G HV Q GS +  +  RFD +H +P+T  +++ IE+ VN  I  N  V+T++M+ E A
Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEPLTPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +G
Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-- 777
           IRR+E +TG+ A + +  Q   + +LA+ LK +  ++  +V ++  + +  + + AK   
Sbjct: 681 IRRVEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLS 740

Query: 778 -KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I ++ 
Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799

Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +V+  V+++++ +  NA  L R        G GGGR  MAQ GG      +  I  + 
Sbjct: 800 KMNVIAGVSKNIIGKTPNAAQLVRHLC-----GKGGGRDDMAQGGGDVPEDLNSKIKEIK 854

Query: 894 SFLKK 898
             ++K
Sbjct: 855 EMIEK 859


>gi|239503494|ref|ZP_04662804.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB900]
          Length = 878

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/913 (43%), Positives = 531/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV    E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVHANVELVSAL 746

Query: 771 QLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L      DL      IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 865 GQVMAALPAWLEQ 877


>gi|84517390|ref|ZP_01004743.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84508754|gb|EAQ05218.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 884

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/911 (48%), Positives = 584/911 (64%), Gaps = 42/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH ++PSS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MTSLADIRSTFLNYFEKQGHRVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTRDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF LWKKI G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFDLWKKI-GVPEDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D+ + LI+AS   T    +G    +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 KHDNYDTDVMRALIEASANATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+ AL  +MG+AYPEL Q + LIEETL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVSALVQQMGAAYPELGQGQRLIEETLMNEEIRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L +D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKG-RAVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      IWF + +  G T F+GYD L                
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADSAIWFDVADLAGPTDFLGYDSLD--------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   V   +KA+V  G +V++A  G  V++V +QT FYAE+GGQ+GD G    D  
Sbjct: 464 --------VEGQIKALVADGAMVQQA--GGAVQIVLNQTSFYAESGGQVGDAGILQTDTG 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             QITD  KK  G+F+H A V  G +       L +D   R  +  NHSATHLL+ AL  
Sbjct: 514 TAQITDT-KKVAGVFIHFATVTNGTIAVGQGAALRVDAGRRAAVQANHSATHLLNEALRE 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG H++Q GS   PD LRFD +H+KP+++ EL  IE +VN +I QN  V TRIM  +DA
Sbjct: 573 TLGDHIAQRGSLNAPDRLRFDFSHTKPVSADELAQIERDVNALIRQNTRVETRIMAPDDA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  +DG         +S  LCGGTHV   GEI     + 
Sbjct: 633 RALGAQALFGEKYGDEVRVVSMGRKDGSGKGAAGNTYSLELCGGTHVRQLGEIGAFVALG 692

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +++  AG+RRIEA+TGQ A  +L  QD++L  +A+ LK    +V  RV+ + +E R L  
Sbjct: 693 DAASSAGVRRIEALTGQAALDYLRAQDQRLADVAAALKAPASDVADRVKALMDERRTLAN 752

Query: 771 QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L +           ++  + F + ++S V  K+L S++D ++  + SG+++L
Sbjct: 753 EVAQLRRELAMGGGAQGASPALQVNGIAFHAQVLSGVTGKDLPSLIDQIKTDLGSGVVLL 812

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + + KA++ + VT DL  R +AVD+ R     LGG GGGGRP MAQ GG +   A+ 
Sbjct: 813 IADTGD-KAAIAVGVTADLTTRVSAVDILRAVTPELGGKGGGGRPDMAQGGGASTQNAEA 871

Query: 888 AIAGVASFLKK 898
           AI    S L+K
Sbjct: 872 AITQAKSILEK 882


>gi|89899401|ref|YP_521872.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|122480046|sp|Q221G2|SYA_RHOFD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89344138|gb|ABD68341.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118]
          Length = 876

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/908 (40%), Positives = 530/908 (58%), Gaps = 56/908 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++V+ IR  FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 8   ASVADIRKIFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++  W+LLTK + L 
Sbjct: 68  ASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWGWELLTKVYKLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY +D+EA+ +W +  GL  ++++RI  N       DNFW MA+TGPCGPCSE
Sbjct: 128 ADKLWATVYIDDDEAYNIWTQEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS E +G+RYIEIWN VFMQ++ Q       LP   +DTGMGLER+
Sbjct: 188 IFYDHGPAIAGGPPGSPEQDGDRYIEIWNHVFMQYDMQPDGSVKPLPAPCVDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+ID+F  LI+A+ + TG    GN   + RVI DH+R+++FL++DG+LP+
Sbjct: 248 AAILQHVHSNYEIDIFDALIKAAARETGCTDLGNK--SLRVIADHIRATAFLVSDGVLPS 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG   P    L+P L T MG AYP L      I + L++
Sbjct: 306 NEGRGYVQRRIIRRAIRHGYKLGQKAPFFYKLVPDLVTLMGEAYPGLATQAERIAQVLQA 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT G PLD+  D+   RG+  +
Sbjct: 366 EEERFFETLANGMQILDETLT--GDAKVLPGDVAFKLHDTFGFPLDLSADVCRERGVE-V 422

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F+ A+E+Q+++ RA           ++  +L+       F+GY+ L          
Sbjct: 423 DEAGFHAAMEKQKAQGRAAGK-------FRMDRALEYSGDGNDFVGYERL---------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + + A+      V E  +GQ   VV   TPFY E+GGQ+GD G 
Sbjct: 466 -------------TEVTKIVALYADSTPVSELKAGQAGVVVLAATPFYGESGGQVGDQGA 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              DG    + D QK    +F HH +++ G L+    +   ++   R     NHSATHL+
Sbjct: 513 IFSDGAMFDVADTQKIKADVFGHHGVLKSGALKIGDVVTAHVNASLRAATQRNHSATHLM 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  +  RFD  H+ P+T  +++ +E  VN  I  N    +R+
Sbjct: 573 HKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTDEQIREVEARVNSEILSNAATQSRV 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A  +GA  L G KY + VRV+ +        S  LCGGTHV+ TG+I L  +V+E
Sbjct: 633 MDIDAAQETGAMMLFGEKYGESVRVLDIG------ASRELCGGTHVARTGDIGLFKVVAE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + +G+RRIEA+TGQ A S+L   ++ +  +A  LK     +  RV  + +  + L+  
Sbjct: 687 SGVASGVRRIEAVTGQNALSYLQDLEDTVTQVAGTLKAPVVEINERVAGVLDHLKSLEKE 746

Query: 774 HA--KRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K KL     D    +  DV  +  ++      D+K L+  MD L+ K++S +I+L 
Sbjct: 747 IAALKGKLASAQGDELVTQAVDVKGIKVLVAMLEGADTKTLRDTMDKLKDKLKSAVIVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  +   VT + + +  A +L    A  + GG GGG+P MA +GG    K   A
Sbjct: 807 AVEGD-KVQIAAGVTSNSVGKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTEPAKLPAA 864

Query: 889 IAGVASFL 896
           +A V +++
Sbjct: 865 LASVMAWV 872


>gi|325130665|gb|EGC53406.1| alanyl-tRNA synthetase [Neisseria meningitidis OX99.30304]
          Length = 874

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/910 (41%), Positives = 527/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 -LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
             +  V  ++
Sbjct: 860 AVLDSVKDWV 869


>gi|103487205|ref|YP_616766.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|123253182|sp|Q1GSD9|SYA_SPHAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|98977282|gb|ABF53433.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
          Length = 884

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/888 (49%), Positives = 596/888 (67%), Gaps = 37/888 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR +FL++F   GH + PS+ L+P NDPTLMF N+GMVPFKN+FTG EK  Y  
Sbjct: 1   MTSTNDIRRSFLDYFGGAGHHIEPSAPLVPYNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW L+T+ + L
Sbjct: 61  AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLITQTWGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L  TVY  D+EAF LWKKI+GL  ++IIRI T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 121 APEKLTATVYHTDDEAFDLWKKIAGLPDERIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS E +G+R++EIWNLVFMQ+EQ    ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 DHVRGGPPGSPEEDGDRFVEIWNLVFMQYEQLPGGERVDLPRPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD D FK LI+AS ++TG++ +  +  +HRVI DHLR+SSFL+ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDTFKALIEASVELTGVRADEAHRASHRVIADHLRASSFLVADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  LLP+L  EMG+AYPELI+A+ LI ETL  E+ +F 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLLPSLTAEMGAAYPELIRAQPLIAETLEREEVKFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+GL LLD   + +G+ + L GDVAFKLYDT+G P D+ +D L ++G++ +D   F+
Sbjct: 361 QTLDKGLRLLDEATADMGRGDTLVGDVAFKLYDTYGFPYDLTEDALRSKGIS-VDRAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +Q++ ARA   G G   +E+IWF L E +G+T+F GY    G              
Sbjct: 420 AAMAQQKAAARAAWKGSGQKASEEIWFDLAETHGSTEFTGYTSTSG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                     + V A+V+ G+ VEEA +G +V V+ +QTPFY E+GGQ+GD G     +G
Sbjct: 466 ---------EATVIALVRDGQPVEEARAGDEVIVLTNQTPFYGESGGQMGDAGMIATLEG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  ++D  K    +  H A +E G L+   ++ LT+D + R ++  NHSATHLLH AL 
Sbjct: 517 AKASVSDTGKPLGRLHTHQAKLEAGTLKVGDTVQLTVDAERRDRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D  RFD +H K +T+AE+  IE +VN  I  N PV TR+M  +D
Sbjct: 577 NRLGGHVTQKGSLVAADRFRFDFSHPKALTAAEIADIEADVNAQIRGNEPVTTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AIA+GA AL G KY D VRV+++   D   +S  LCGGTHV + G+I L  IVSES++ +
Sbjct: 637 AIAAGALALFGEKYGDEVRVLAMGKADDRNYSVELCGGTHVRALGDIALFKIVSESAVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+TG+ AR  L G+DE LK+ A+ LK S   V  RV ++ E+ +K +   A  K
Sbjct: 697 GVRRIEALTGEAARQWLNGRDEALKAAAAALKTSPDEVPARVAQLAEQLKKAERELADAK 756

Query: 779 LQL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             L               +  ++ DV F++ ++  +D KEL+  +D L+K++ SG+ MLV
Sbjct: 757 KALALGGSGGDGGAAAGPAVEQVGDVAFLAQVVDGLDPKELRGTVDGLKKQVGSGVAMLV 816

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +  + +ASV + VT+D     +AVDL + +   LGG GGGGRP MAQ
Sbjct: 817 AV-NDGRASVAVGVTDDKTGHHSAVDLVKAAVVALGGQGGGGRPDMAQ 863


>gi|121608636|ref|YP_996443.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|205830282|sp|A1WIG8|SYA_VEREI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121553276|gb|ABM57425.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 872

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/907 (40%), Positives = 524/907 (57%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 5   SVADIRKSFLDFFVAKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++Q AW+LLT+ + L  
Sbjct: 65  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLQWAWELLTEVYRLPA 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY +D+EA+ +W +  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 125 ERLLATVYQDDDEAYDIWTREIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 184

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D       G      E+G+R+IEIWN VFMQF          LP   +DTGMGLER+A
Sbjct: 185 FYDHGPGIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAADGSVTPLPAPCVDTGMGLERLA 244

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ+  +NY+IDLF+ LI A+ + TG K  G+   + RVI DH+R+S+FL++DG+LP +
Sbjct: 245 AVLQQVHSNYEIDLFEQLIAAASRETGEKDLGHK--SLRVIADHIRASAFLVSDGVLPGS 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRIMRRA+ +   LG   P +  L+  L   MG+AYP L   +  I + L++E
Sbjct: 303 EGRGYVQRRIMRRAIRHGYQLGQRAPFLHRLVADLVRLMGAAYPSLRAQQQRIADILKAE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   RG+A +D
Sbjct: 363 EERFFETLAHGMEILDAALD--GGAKLLPGDVAFKLHDTYGFPLDLSADMCRERGVA-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+ A+E Q+++ARA           K+  +L+   GA++F GY+ L G         
Sbjct: 420 EAGFHLAMERQKTQARAAGK-------FKMERALEYTGGASRFTGYEDLAG--------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI   G  V    +GQ   +V D+TPFYAE+GGQ+GD G  
Sbjct: 464 --------------TAKITAIYAAGTSVAALKTGQHGVLVLDRTPFYAESGGQVGDQGLI 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +  HH  +E G L    ++   ++   R     NHSATHL+H
Sbjct: 510 SSGSARFAVDDTLKIKADVHGHHGRLEDGTLNVGDTVQARVNTALRAATMRNHSATHLMH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  +  RFD  H+  ++SAEL+ IE  VN+ I  N P   R+M
Sbjct: 570 QALRAVLGSHVQQKGSLVNAERTRFDFAHNAAVSSAELREIERRVNEEILANQPTQARVM 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A +SGA  L   KY   VRV+ +        S  LC GTHV  TG+I L  +V+E 
Sbjct: 630 DIEAARSSGAMMLFDEKYGAAVRVLDIGS------SRELCAGTHVQRTGDIGLFKVVAEG 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A + L   ++ +   A  L+     + GR+ +  +  R L+   
Sbjct: 684 GVAAGVRRIEAVTGSHALAWLQQLEDTVNQAADTLRAPVAELNGRISQALDNARALEKEV 743

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K +L             +I  +  ++  +   D+K L++ MD L+ ++++  I+L  
Sbjct: 744 AALKSRLAASQGQELLARAVQIKGLAVLAATLPGADAKTLRATMDQLKDQLKTAAIVLAA 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A DL    A+ + GG GGG+P MA +GG +      A+
Sbjct: 804 VDGD-KVQLAAGVTADSVGRIQAGDLVNFVARQV-GGKGGGKPDMAMAGGTDAAGLPAAL 861

Query: 890 AGVASFL 896
           A VA ++
Sbjct: 862 ASVAGWV 868


>gi|308389728|gb|ADO32048.1| alanyl-tRNA synthetase [Neisseria meningitidis alpha710]
          Length = 885

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 528/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 428 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 577 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 869

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 870 PAVLDSVKDWV 880


>gi|254510259|ref|ZP_05122326.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221533970|gb|EEE36958.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 890

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/914 (48%), Positives = 570/914 (62%), Gaps = 44/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   YQ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+TKEF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPEAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+E +G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGAMVELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L   MG+ Y EL QA+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPIMYQLVPTLVQLMGAQYSELGQAQPLIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L   + L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELAGLPAGDPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + +  GAT F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWAGSGESADQVVWFDVLDTAGATDFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---G 536
                       + A+V  G +V+    G    +V +QTPFY EAGGQ+GDTG       
Sbjct: 462 ------EKAEGQIAALVVDGVLVDSIEQGGSGWIVVNQTPFYGEAGGQVGDTGEIRRLDA 515

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                ++ D +K AEG ++ H   V+ G +    ++ L +D+  R  +  NHSATHLLH 
Sbjct: 516 RDDVARVEDTRKFAEGKVYAHKVTVDHGAISKGDAVELEVDHARRTAIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS    D LRFD +HSK +T  E+K +E  VN  I QN  V TRIM 
Sbjct: 576 ALRETLGDHVAQRGSLNASDRLRFDFSHSKALTLDEMKKVEREVNAFIRQNSTVETRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA   GA AL G KY D VRVVS+        +DG   S  LCGGTHV  TG+I    
Sbjct: 636 PDDARELGAQALFGEKYGDEVRVVSMGKATTGKGQDGETWSIELCGGTHVRQTGDIGTFV 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ +S+  AG+RRIEA+TG  A  +L  QD +L ++A  LK    +VV RV+ + +E + 
Sbjct: 696 VLGDSASSAGVRRIEALTGDEAFKYLSAQDHRLGTIALELKAQPDDVVTRVKSLLDERKA 755

Query: 770 LQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ +  L +              +  V FM+  ++ V  K+L +++D  + ++ S
Sbjct: 756 LQNEVAQLRRDLAMAGGAGQGGGSEARDVNGVAFMAQSLTGVSGKDLPALIDEHKSRLGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+++L+      KA+V   VT DL D+ +AVDL R +   LGG GGGGRP MAQ GG + 
Sbjct: 816 GVVLLIA-DTGGKAAVAAGVTADLTDQLSAVDLVRAAVAELGGKGGGGRPDMAQGGGKDA 874

Query: 883 NKADQAIAGVASFL 896
           + AD AI      L
Sbjct: 875 SNADAAIRAAEQVL 888


>gi|50084439|ref|YP_045949.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|59798530|sp|Q6FCT2|SYA_ACIAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49530415|emb|CAG68127.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 878

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/913 (43%), Positives = 536/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A+  AWD LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALTFAWDFLTSEQWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+AD+IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAADRIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HLI+++ ++  +K EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLIKSACEIINVKDEGQ--PSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   +  IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIDVMGDAYPELKNDQARIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L   +++ G+  FKLYDT+G P D+  DI   R L 
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELTQLS-GKVIPGETVFKLYDTYGFPTDLTADIARERDLE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID + F + +E QR RAR       +G     + S+ +  G TQF GY    G      
Sbjct: 418 -IDEVGFEREMEAQRRRAR------DAGKFAVDYNSIVKVEGETQFDGYHATAG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + GE V+E V G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGEIVAIYKDGEQVDEVVEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    D    ++ D  KK+ G FVH  IV  G L+    +   +    R   + NHSATH
Sbjct: 508 GLFKNDTGIFEVQDT-KKSGGAFVHQGIVTMGSLKAAQHVDAIVKADIRAATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILG+HV Q GS +  D LRFD  + +P++  +L+ IE  VN  +  N  V T
Sbjct: 567 LLHAALRQILGTHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLVNAEVIANSAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSVIDEHNFSIELCGGIHVQRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + AGIRRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E+   L
Sbjct: 687 ISEGGVAAGIRRIEAVTGTKALEVVQKADADIQHINSLLKAQKDQTVERVQAAVEQTSAL 746

Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVNF---MSHIISEVDSKELKSVMDALQKKIQSGII 825
             Q+    +KL          ++ ++     +   +  +D+K L+++ D+++ K++  +I
Sbjct: 747 HKQIEQLNQKLANFQAAELLSQVQNIAGRSTLITTVQNIDAKSLRNLHDSVKSKLEDAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S++  V +       A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGLEGD-KISLIASVAKQYTAHLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
           +  IA + ++L++
Sbjct: 865 EHVIAALPAWLEQ 877


>gi|71908916|ref|YP_286503.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB]
 gi|83305844|sp|Q47AU8|SYA_DECAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71848537|gb|AAZ48033.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB]
          Length = 871

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 536/910 (58%), Gaps = 55/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-SEIRQQFLDFFASKGHQIVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ + L
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L +TVY ED+EA+ +W K  G+  +++IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKDKLTVTVYAEDDEAYDIWTKEIGVPVERVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE   GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 180 EIFYDHGEKYWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ    NY+IDLF+ L++A+ + T       +  + +V+ DH+R+ SFL+ADG++P
Sbjct: 240 VSAVLQGVHANYEIDLFQALLKAAARET--SDADLDSPSLKVLADHIRACSFLLADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL Q +  I  TL+
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGMAYPELGQNQAKIVATLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++RF +T++ G+ +L+G L  LG+  + NGD AFKL+DT+G PLD+ QDI     +  
Sbjct: 358 QEEDRFFETIEHGMAILEGELKSLGEGGVFNGDTAFKLHDTYGFPLDLTQDICREHKIT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  +F+ A+  Q+ +ARA           K+  +L+    AT F GY  L         
Sbjct: 417 VDAAAFDAAMARQKEQARAAGK-------FKMATNLEYDGPATTFHGYAALEY------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V A+ + G  V +   G+   VV D TPFYAE+GGQ+GD G
Sbjct: 463 ----------------KANVLALYKDGIAVNQLNEGEMGVVVLDDTPFYAESGGQVGDCG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     + D QK    +F HH +V+ G +     +   +D Q R+++  NHSATHL
Sbjct: 507 ALQSVHGIFAVEDTQKIQATVFGHHGVVKTGTITVGNGVAAKVDVQARQRIMRNHSATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS + PD  RFD  H++P+T  E++ +E+ VN  I  N+   TR
Sbjct: 567 LHKALREVLGDHVQQKGSQVDPDKTRFDFVHNQPMTDEEIRRVENIVNAEILANVATETR 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++   +A   GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I +
Sbjct: 627 VLPIAEAQKLGAMMLFGEKYGDDVRVLDIGS------SRELCGGTHVSRTGDIGLFSITA 680

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RR+EA+TG  A +++   +  L  +A  LKV   +V GRV  + ++ +KL+ 
Sbjct: 681 EGGVAAGVRRVEAVTGDNALAYMQDMESALGGVAGTLKVLPKDVHGRVLAVLDQVKKLER 740

Query: 773 IHA--KRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A  K KL     D        I     ++  +   D   L+  MD L+ K++S  I+L
Sbjct: 741 ELAALKGKLASAQGDDMLSNAVDIKGAKVLAATLEGADVNALRETMDKLKDKLKSAAIVL 800

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ + K +++  VT DL  +  A +L  L A+ + GG GGGRP MAQ+GG        
Sbjct: 801 ASVA-DGKVTLIAGVTADLTGKVKAGELVNLVAQQI-GGKGGGRPDMAQAGGTQPENLPA 858

Query: 888 AIAGVASFLK 897
           A+A VA +++
Sbjct: 859 ALASVAGWVE 868


>gi|310815943|ref|YP_003963907.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754678|gb|ADO42607.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 868

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/868 (50%), Positives = 570/868 (65%), Gaps = 40/868 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL F+ +NGH ++PSS L+P NDPTLMFTNSGMV FKN FTG E   Y  
Sbjct: 24  MTSLADIRSTFLNFYARNGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNTFTGVETRDYVR 83

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLTK+F +
Sbjct: 84  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKESAIPFAWELLTKDFGI 143

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL +TVY  D+EA  +WKK++GLS D+IIRI TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 144 NKDRLLVTVYHTDDEAANIWKKVAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 203

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWNLVFMQFEQ     R  LPK SIDTGMGLER+  +LQ 
Sbjct: 204 DHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQFEDGSRTGLPKPSIDTGMGLERIGALLQG 263

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 264 KHDNYDTDLMRALIEASAHATSNDPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 323

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  EMG+AYPEL +A+ LIEETLR+E+ RF 
Sbjct: 324 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGAAYPELNRAQALIEETLRAEETRFK 383

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L  D  L G  AFKLYDT+G PLD+ QD L  +    +D   F 
Sbjct: 384 QTLDRGLRLLDDELGQLPGDAALPGATAFKLYDTYGFPLDLTQDALREKNRT-VDTDGFT 442

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF L E+ G T+F+GYD L+               
Sbjct: 443 AAMNEQKAKARAAWAGSGEQADASVWFDLVEQNGTTEFLGYDTLQ--------------- 487

Query: 480 PPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       V AIV   G ++E A  G +V+VV +QTPFYAE+GGQ+GD G    D 
Sbjct: 488 --------AEGQVTAIVAPAGALMERAEIGAQVQVVLNQTPFYAESGGQVGDAGLLRTDT 539

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++TD +K A G F H   V  G +      VLT+D   R Q++ NHSATHL++ AL 
Sbjct: 540 GVIEVTDTKKHA-GAFAHIGTVREGFVAVGQGAVLTVDATRRGQIAANHSATHLVNEALR 598

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS   PD LRFD +H+K +++ E+  ++ +VN  I QN PV TR+M  ++
Sbjct: 599 AALGDHVAQRGSLNAPDRLRFDFSHNKALSADEIAKVQADVNAYIRQNTPVETRVMTPDE 658

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIV 711
           A   GA AL G KY D VRVVS+   DG         +S  LCGGTHV+  GEI    ++
Sbjct: 659 ARDLGAQALFGEKYGDEVRVVSMGRLDGSNKGVDKNTYSLELCGGTHVTRLGEIGAFVLL 718

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           S+S+  AG+RR+EA+TGQ A  HL  Q+  L S+AS LK S  +VV RV  + +E + L 
Sbjct: 719 SDSASSAGVRRVEALTGQAALDHLAAQEAALISVASLLKTSAADVVERVRALVDERKALS 778

Query: 771 -QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            ++   +R L +      D++      V+  + ++S V  K+L +++D+ + ++ SG+++
Sbjct: 779 NEVAQLRRDLAMAGGAKNDVAIRDAGGVSLQAQLLSGVTGKDLPALVDSFKSELGSGVVL 838

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVD 854
           L+    + KA+V   VT DL D+ +AV+
Sbjct: 839 LIA-DVDGKAAVAAGVTADLTDKVSAVE 865


>gi|54297712|ref|YP_124081.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|59798487|sp|Q5X4B7|SYA_LEGPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53751497|emb|CAH12915.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 860

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/905 (41%), Positives = 551/905 (60%), Gaps = 53/905 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ 
Sbjct: 1   MKS-SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +
Sbjct: 60  AATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G
Sbjct: 120 PAERLWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+RYIEIWNLVFMQF +  +    +LPK S+DTGMGLER+A V+Q 
Sbjct: 180 PEVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHLLPKPSVDTGMGLERLAAVIQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ID F++LI+A  Q+ G   + N+  + +VI DH+RS SFLI DG+LP+NEGRGY
Sbjct: 240 VHSNYEIDSFQYLIKAIAQL-GQNIDLNH-TSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F 
Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL   + +L K + L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FN
Sbjct: 358 RTLEQGLRLLQDHIKNL-KGQELSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++QR +++A S           + ++ +    ++F GY+                  
Sbjct: 416 QLMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG   
Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKNC 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+ D QK  + + VH+  V +G L  ++S+   +D+  R  + +NH+ATHLLH AL  
Sbjct: 507 SFQVDDTQKVGQAV-VHYGEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+G HV Q GS +  +  RFD +H + +   +++ IE+ VN  I  N  V+T++M+ E A
Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEALNPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +G
Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-- 777
           IRRIE +TG+ A + +  Q   + +LA+ LK +  ++  ++ ++  + +  + + AK   
Sbjct: 681 IRRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKISQLLLDNKNQEKMIAKLLS 740

Query: 778 -KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I ++ 
Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799

Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +V+  V+++++ +  +A  L R        G GGGR  MAQ GG      +  I  + 
Sbjct: 800 KMNVIAGVSKNIIGKTPSAAQLVRHLC-----GKGGGRDDMAQGGGNVPEDLNSKIKEIR 854

Query: 894 SFLKK 898
             ++K
Sbjct: 855 EMIEK 859


>gi|325121489|gb|ADY81012.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 883

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/914 (43%), Positives = 531/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   LMTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +  
Sbjct: 65  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + +LY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G+ I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 185 CSEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDIDLF+HL++A+  + G++ +G    + RV+ DH RS  FLIADG+
Sbjct: 245 ERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDQGQ--PSLRVVADHARSCCFLIADGV 302

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE T
Sbjct: 303 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEAT 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R  
Sbjct: 363 LIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G     
Sbjct: 422 I-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYINTTG----- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 470 ------------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSAT
Sbjct: 512 TGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V 
Sbjct: 571 HLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVT 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  
Sbjct: 631 TELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFK 690

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    
Sbjct: 691 ITSEGGVAAGVRRIEAVTGTKALDVVQKTDADIQHINSLLKAQKDQTVERVQANVELVSA 750

Query: 770 LQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ    +   +L      +L      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 751 LQKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|169633133|ref|YP_001706869.1| alanyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|169151925|emb|CAP00779.1| alanyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 878

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/913 (43%), Positives = 532/913 (58%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPGS  E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   + +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   RG  
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RA        +G     + ++ +  G TQF GY    G      
Sbjct: 418 -IDEAGFEVEMAAQRQRA------HDAGKFAVDYNNIVKVEGETQFDGYTNTTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D  KK+ G FVH  IV  G L+T  ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATAHNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +T D LRFD  + +P++  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVTSDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ + S LK  +   V RV+   E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQYINSLLKAQKDQTVERVQANVELVSAL 746

Query: 771 QLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L      DL      IA    +   +  VD+K L+++ D+++ K+++ +I
Sbjct: 747 QKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVI 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q +A + ++L++
Sbjct: 865 GQVMAALPAWLEQ 877


>gi|330993337|ref|ZP_08317272.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329759367|gb|EGG75876.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 861

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/882 (48%), Positives = 565/882 (64%), Gaps = 31/882 (3%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y   TT QK VRAGGKHNDLDNVG 
Sbjct: 1   MPSSSLVPHNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNVGY 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142
           T RHHTFFEM+GNFSFG YFK  AI+LAW L+T  F L + +L  TVY +DEEA  LW++
Sbjct: 61  TARHHTFFEMMGNFSFGDYFKAEAIELAWKLVTGTFGLPKEKLLTTVYADDEEAASLWRR 120

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIW 201
           I+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G  + GG PGS  E+G+R+ EIW
Sbjct: 121 IAGLSDDRIIRIPTSDNFWRMGDTGPCGPCSEIFYDHGPEVAGGPPGSPDEDGDRFTEIW 180

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           NLVFMQ+ +     R  LP+ SIDTG+GLER A +LQ K +NYD D F+ LI AS +VTG
Sbjct: 181 NLVFMQYFENPPGTRSPLPRPSIDTGLGLERFAAILQGKRDNYDTDTFRALILASAEVTG 240

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
              +G    +HRV+ DHLRS+SFLIADG+LP+ +GRGYVLRRIMRRAM +  ++G TEP 
Sbjct: 241 QDPDGPFNASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTTEPT 300

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+PAL  +MG AYPEL+ A+ LIE T++ E+ERF   LDRGL LL      LG    
Sbjct: 301 FYKLVPALIRQMGEAYPELVHARALIEGTMKGEEERFKAMLDRGLSLLADETERLGDGAP 360

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L GDVAFKLYDT G PLD+ QD L       +D+  FN A+E QR RARA   G G   T
Sbjct: 361 LPGDVAFKLYDTFGFPLDLTQDALRGSS-HNVDVAGFNAAMEVQRKRARAAWSGSGDSAT 419

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           E +WF  ++ +GAT+F+GY                        T    + V+ ++     
Sbjct: 420 ETVWFEARDTFGATEFLGY-----------------------TTETSDAEVQTVIVDNAQ 456

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           VE A  G KV ++ +QTPFY E+GGQ+GDTG     G+ + ITD QKK   + VH+  V 
Sbjct: 457 VESAGPGTKVALLLNQTPFYGESGGQVGDTGTITAPGLHIAITDTQKKLGDLLVHYGTVI 516

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++  M++   +D+  R  +  +HSATHLLH A+   LG+HV+Q GS   PD LRFDV
Sbjct: 517 EGTVKPGMAVTAQVDHDRRSAIRAHHSATHLLHEAMRRRLGAHVTQKGSLNAPDRLRFDV 576

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +  +PIT  EL  IE  VN  I +N  V TR M  E+AI  GA AL G KY D VRVVS+
Sbjct: 577 SQPRPITPEELADIEAEVNARIRENTDVTTRHMTPEEAIEQGAMALFGEKYGDEVRVVSM 636

Query: 682 EYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
              + G    S  LCGGTHV  TG+I L  I SES + +G+RRIEA+TG  A++  +  +
Sbjct: 637 GGPEEGRAGWSIELCGGTHVRRTGDIGLFRITSESGVSSGVRRIEAVTGLAAQNATIATE 696

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQL-NVEDLSCHKIADVNF 796
           E+L  +A+ L+V       R+  + EE +  + Q+   +RKL   +    S   +  +  
Sbjct: 697 ERLNQIAAMLRVPPAETPERLAVLLEERKVMERQISDLQRKLASGSQAAASIVDVGGIKL 756

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
            +  + E+ +KELK + D+L+K+I SG+I+L+  + + K S+++  T DL ++ +AV L 
Sbjct: 757 DARNVGELPAKELKPLADSLRKEIGSGVIVLISTA-DGKGSIVVAATPDLGEKVDAVALV 815

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           R ++  +GG GGGGR  MAQ+GGP+  + + A+  V + L++
Sbjct: 816 RAASTAMGGKGGGGRRDMAQAGGPDTTRVEAALEAVRAALQQ 857


>gi|326561060|gb|EGE11425.1| alanyl-tRNA synthetase [Moraxella catarrhalis 7169]
          Length = 893

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/919 (40%), Positives = 528/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +L     N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKLASLHANSLTDNLKDIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|328954420|ref|YP_004371754.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454744|gb|AEB10573.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 878

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/908 (41%), Positives = 537/908 (59%), Gaps = 43/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F+   H  + SSSL+P +DPTL+FTN+GMV FK +F G+E+  Y   
Sbjct: 1   MTGKEIREKFLAYFESKRHVRVASSSLVPAHDPTLLFTNAGMVQFKRLFLGEEQRGYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK  AI++AW+LLT+ + L 
Sbjct: 61  ASAQKCVRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKAGAIEMAWELLTEHYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ TVY +D+EA  LW  +  L  ++I+R+   DNFW+M +TGPCGPCSEI  DQGE
Sbjct: 121 TERLWATVYHDDDEAADLWHDVIHLPRERIVRLGEKDNFWAMGDTGPCGPCSEIIIDQGE 180

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +RY+EIWNLVFMQF +  +     LPK SIDTGMGLER+  V+Q 
Sbjct: 181 ERACGPDCGIGRCDCDRYLEIWNLVFMQFNRDEQGNLTPLPKPSIDTGMGLERLTAVIQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DL + +I  +E++ G+ Y  +    V  +VI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VPTNFDTDLIRPVIARTEELAGIAYGQDPALDVAFKVIADHCRAITFLITDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG+ +P +  +   +   MG  YPEL+ A+  I++ + +E+ER
Sbjct: 301 GYVLRRILRRAVRFGRLLGFKQPFLAPVGQKVIELMGGDYPELLDARSFIDQVVHNEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL +L   L  L    +  L GD+AFKLYDT+G PLD++ D+L  + L  +D+
Sbjct: 361 FAETLDHGLKILTDNLEDLKARGERRLPGDIAFKLYDTYGFPLDLITDVLQEQQLE-LDL 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +  QR  +R    G   G    ++  L++   AT F+GYD              
Sbjct: 420 SGFNEHMSRQRESSRQSWKGGLPGELPPVYQVLQD-LEATVFVGYDQFE----------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+Q+G  V  A +G+ VE+V + TPFYAE+GGQ+ DTG   
Sbjct: 468 ------------AESQILAIIQEGATVSGAKAGRSVEIVVETTPFYAESGGQVADTGTIR 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G    + ITDVQ+    + +H   +++G +R    +VL ID   RRQ++ +H+ATHLLH 
Sbjct: 516 GPDFLITITDVQRLPNDVVIHKGEIKQGEIRVGKKVVLAIDAGRRRQIACHHTATHLLHA 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV Q GS + PD  RFD +H   ++ A L  +E ++   I QNLPV    M 
Sbjct: 576 ALRHRLGDHVKQAGSLVAPDRFRFDYSHFTGLSDAVLAQLEVDLLHDIQQNLPVNVSYMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A+ +GA AL   KY + VR+V+V        S  LCGG HV  TG+I    I+SESS
Sbjct: 636 MSEALETGAMALFDEKYGNIVRLVAVPG-----VSLELCGGAHVDQTGDIGFCKIISESS 690

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G  A  +L  + ++L ++   LK  +G ++ R++++ +  R+L+    
Sbjct: 691 VAAGIRRIEAVCGAAALRYLQEESQELSAVGQRLKAGKGEILARLDKLLQRQRELEKEVE 750

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + QL              +  V  ++  +   D K L+   D L+ ++QSG+I+L G 
Sbjct: 751 ALQGQLAAARSGDLLERVRHVDGVKVLALEVDVADPKGLRDFADKLKDRLQSGVIIL-GS 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            +  KA ++ VVT+DL DR +A  +    A  L GG GGGRP MAQ+GGP   K  + ++
Sbjct: 810 GRGDKAMLITVVTKDLTDRLHAGKIVGELAARL-GGKGGGRPDMAQAGGPAKEKLPEVLS 868

Query: 891 GVASFLKK 898
                + K
Sbjct: 869 EAYGVVAK 876


>gi|304386989|ref|ZP_07369247.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304338946|gb|EFM05042.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 885

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 529/911 (58%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  D+    G+
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 428 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 577 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|126729804|ref|ZP_01745617.1| alanyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126709923|gb|EBA08976.1| alanyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 890

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/897 (48%), Positives = 573/897 (63%), Gaps = 44/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH+++PSS L+P NDPTLMF NSGMV FKN FTG EK  Y  
Sbjct: 1   MASLNDIRSTFLNYFEKQGHQIVPSSPLVPRNDPTLMFVNSGMVQFKNRFTGVEKGDYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  A++L+T+EF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAYELITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ R+Y TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRIYTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS E +G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 PEVWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS Q T +  +G   ++HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 KHDNYDTDLMRSLIEASAQATSVDPDGPGKMHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL + + +IEETL SE+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPLMHRLVPALVRQMGTAYPELSRGQAMIEETLLSEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  LS LG D  L G+ AFKLYDT G PLD+ QD L  +G   +DI  F+
Sbjct: 360 QTLDRGLKLLDEELSGLGDDAALPGETAFKLYDTFGFPLDLTQDALREKG-RSVDIEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ++RARA   G G      +W+ + E +GAT F+GYD                  
Sbjct: 419 AAMAEQKARARAAWSGSGDAADTAVWYDIAETHGATDFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIG 536
                       V A+V+ G +V     G+K  +V +QTPFY E+GGQ+GDTG       
Sbjct: 462 ------EQAEGQVLALVKDGALVTSLAEGEKGWIVLNQTPFYGESGGQVGDTGWLRRLED 515

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +     + D QK   G +F H   V +G      +L L +D+  R  +  NHSATHLLH 
Sbjct: 516 EHEIATVEDTQKMGGGKVFAHLVKVNKGTFAKGDALALEVDHGRRSSIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   PD LRFD +H K ++++E+K++E +VN  I QN PV TR+M 
Sbjct: 576 ALREALGDHVAQRGSLNAPDRLRFDFSHGKALSASEIKNVERDVNAYIRQNTPVSTRLMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+  +       DG  +S  LCGGTHV  TG+I   
Sbjct: 636 PDDARAIGAQALFGEKYGDEVRVVSMGAKPGSGKGADGATYSLELCGGTHVRQTGDIGAF 695

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
             + +S+  AG+RRIEA+TGQ A  HL  Q + L ++A+ +K     V  RV  + EE R
Sbjct: 696 VCLGDSASSAGVRRIEALTGQLALDHLAQQGQTLAAVAAEMKAPASEVPARVRTLLEERR 755

Query: 769 KLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           KL+   A  + +L +            +I  V F++ +++ V  K+L  ++D  + ++ S
Sbjct: 756 KLESEVASLRRELAMSGGGQGAGPEAEEIGGVKFLAQVLTGVTGKDLPPLIDEHKSRLGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           G ++L+  +  K A     VT+DL    +AVDL + +   LGG GGGGRP MAQ GG
Sbjct: 816 GAVLLIADAGGKAAV-AAGVTDDLKGTLSAVDLVKAAVPELGGKGGGGRPDMAQGGG 871


>gi|254480113|ref|ZP_05093361.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214039675|gb|EEB80334.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 866

 Score =  942 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/903 (42%), Positives = 553/903 (61%), Gaps = 47/903 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  V  IR  FL++F+++ H+ + SSSL+P +DPTL+FTN+GMV FK+ F G +   Y  
Sbjct: 1   MKTV-EIREAFLDYFEQHEHQRVASSSLVPGDDPTLLFTNAGMVQFKDTFLGNDPRSYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT    L
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWNFLTGTLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++T +  D+EA +LW    G   ++I R+   DNFW M +TGPCGPC+EIF+D G
Sbjct: 120 PPERLWVTCHVSDDEAEELWVNEIGFPRERITRL-DEDNFWQMGDTGPCGPCTEIFYDHG 178

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             +PGG PGS EE  +RYIEIWNLVFMQF + +  +   LP  S+DTGMGLER+A V+Q+
Sbjct: 179 PDVPGGPPGSPEEDMDRYIEIWNLVFMQFNRDSSGKMHPLPAPSVDTGMGLERIAAVMQQ 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+++  +  +    +N  + RVI DH+RS +FLIADG+LP NEGRGY
Sbjct: 239 VHSNYEIDLFQALIKSAASILDVDDLEHN--SLRVIADHIRSCAFLIADGVLPGNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG T+P    L   L  EMG AYPEL++ +  IE+ L +E+E+F 
Sbjct: 297 VLRRIIRRAVRHGNKLGATQPFFFQLTATLAKEMGGAYPELVKLQPQIEKALLTEEEQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD G+ +L+  L+ L  DE + GDV FKLYDT G P+D+  DI   R L  +DI  ++
Sbjct: 357 KTLDNGMQILEEALAGLQGDE-IPGDVVFKLYDTFGFPVDLTNDIARERELR-LDIAGYD 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ +QR+R++        G+ +  +    +  G+T+F GYD LRG              
Sbjct: 415 AAMAQQRTRSQE------GGSFKLDYNDALKLEGSTEFTGYDSLRG-------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+++ GE V+   + +   VV   TPFY E+GGQ+GDTG    +G+
Sbjct: 455 ---------EGTVTALLKDGEEVDFLGTDESGIVVLSSTPFYGESGGQVGDTGYITAEGL 505

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L++T+  K ++   +HH     G +R    +   +D   R++  +NHSATHLLH AL +
Sbjct: 506 KLEVTNTTKASD-QHLHHVNTLTGTIRQGDIVHSVVDDSLRQRTRLNHSATHLLHSALRS 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS +  + LRFD +H + +T  ELK IE  VND +  N  V TR+M+ ++A
Sbjct: 565 VLGDHVQQKGSLVDSERLRFDFSHFEGVTGEELKRIESIVNDQVRANTEVSTRVMSMDEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I L+ I SES + AG
Sbjct: 625 IEAGATALFGEKYGDEVRVLSMG---EAGFSVELCGGTHVARTGDIGLMRITSESGVAAG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIE +TG  A   +   +  L ++   +K +  NV  +V  + +E R+L+   A+ K 
Sbjct: 682 VRRIEGVTGAGALGQIDVTERYLAAVCDVVKGNSVNVADKVAGLRQENRELEKEVARLKQ 741

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L          +  ++A +  ++  +   D+K L+ V+D ++ K+ SG+I+L  ++ + 
Sbjct: 742 KLATGAGTDLTAAAVEVAGIKVLAVNVEGADAKSLRDVLDQVKNKLGSGVILLSAVT-DD 800

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K ++   VT+DL D+  A DL R  A  L GG GGGRP MAQ GG +     + +  V  
Sbjct: 801 KVALTAGVTKDLTDKIKAGDLMREFATRL-GGKGGGRPDMAQGGGSDVAALTEVLKSVPD 859

Query: 895 FLK 897
           +++
Sbjct: 860 WVQ 862


>gi|330988706|gb|EGH86809.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 874

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SSDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|190573725|ref|YP_001971570.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|205830222|sp|B2FL33|SYA_STRMK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|190011647|emb|CAQ45266.1| putative alanyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 882

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/893 (43%), Positives = 540/893 (60%), Gaps = 49/893 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG     N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAVDTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA     G  T   +   L      T F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAGKFGGGVT---LPAELVATLSPTLFLGYDRLQADGL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 475 ----------------TVLALLKDGRPVQSADAGDAVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H   +  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVDDTQKFAGQFHGHVGTLSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGSHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLEREL 753

Query: 775 A---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +       DLS    ++A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 EAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++ KA+++  V    + +  A +L    A  + GG GGGRP +AQ GG +G
Sbjct: 814 -AQDGKAALVAGVNGSAMGKVKAGELLSHIASQI-GGKGGGRPDLAQGGGEDG 864


>gi|325144845|gb|EGC67133.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240013]
          Length = 874

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 526/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  D+    G+ 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 -LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTTESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKLP 859

Query: 887 QAIAGVASFL 896
             +  V  ++
Sbjct: 860 AVLDSVKDWV 869


>gi|325134725|gb|EGC57364.1| alanyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325205670|gb|ADZ01123.1| alanyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 874

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 526/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  D+    G+ 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 -LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKLP 859

Query: 887 QAIAGVASFL 896
             +  V  ++
Sbjct: 860 AVLDSVKDWV 869


>gi|114569559|ref|YP_756239.1| alanyl-tRNA synthetase [Maricaulis maris MCS10]
 gi|122316388|sp|Q0AQY6|SYA_MARMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114340021|gb|ABI65301.1| alanyl-tRNA synthetase [Maricaulis maris MCS10]
          Length = 884

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/907 (48%), Positives = 599/907 (66%), Gaps = 36/907 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++  IR TFL++F K+ HE++PS+ L+P +DPTL+F N+GMVPFKN FTGQEK     
Sbjct: 1   MASLRDIRATFLDYFAKHEHEVVPSAPLVPQDDPTLLFVNAGMVPFKNSFTGQEKRASLR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T EF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAISHAWNLVTGEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TVY EDE+A  LW+KI+GL+ D+II I+T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 PAEKLLVTVYAEDEQARALWRKIAGLTDDRIIGISTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R+IEIWNLVFMQ+EQ    ER  LPK SIDTGMGLER++ +LQ 
Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDERINLPKPSIDTGMGLERISAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K NNY+ DLF++LI A E V G+K EG+ + +HRVI DHLRS+ FL+ADG+ P+NEGRGY
Sbjct: 241 KHNNYETDLFRNLIAAGESVLGVKAEGDALASHRVIADHLRSTCFLMADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  EP+M  L+ AL +EMG AYPEL +A+ L+EETL+ E+ERF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAGEPVMWKLVDALKSEMGDAYPELERAQALLEETLQVEEERFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LL+   + +G+ + L G  AFKLYDT+G PLD+ QD L A+G+  +D   FN
Sbjct: 361 RTLGRGLSLLEEATADMGEGDALAGATAFKLYDTYGFPLDLTQDALRAKGMT-VDEAGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+++QR+ ARA     G    + +WF++++K GAT F GY                   
Sbjct: 420 SAMDKQRADARASKFSSGDAAPDAVWFAVRDKVGATAFTGYAGT---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                  G    + AIV  G+  +   SGQ+ E+VFD+TPFY E+GGQ GDTG     DG
Sbjct: 464 -------GGKGRLTAIVSGGQEAKALGSGQRAELVFDETPFYGESGGQCGDTGEIRFVDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D QK+   +  H  ++ +G +       L  D   R  +  NHSATHL H AL 
Sbjct: 517 AVFTVEDTQKRGGDMHAHIGVLTKGEITLGDVAALDADAPRRAAIRANHSATHLAHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS + PD LRFD +H+K +++ ++ +IE  VN +I QN+PV TR M  + 
Sbjct: 577 DVLGAHVTQKGSHVGPDRLRFDFSHNKSVSADQIAAIEAQVNAVIRQNVPVSTREMTPDA 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY D VRV+++     +    +S  LCGGTHV  TG+I L  I++E++
Sbjct: 637 AIEAGALALFGEKYGDTVRVLAMGQGLADHATPYSVELCGGTHVERTGDIALFKIIAETA 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG+ AR ++  Q    ++ A  LK    ++  RV  + +E RKL+   A
Sbjct: 697 VSSGIRRIEAMTGEGARLYMDEQIGFGRAAADALKTPPSDLATRVAALVDERRKLERQLA 756

Query: 776 KRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           + K QL      +        I  VNF+  ++  V  K+L+ ++D  + ++ SG+   +G
Sbjct: 757 EAKKQLAMGGGASGAPAGPETINGVNFIGRVVEGVGGKDLRGLIDEAKAQMGSGVAAFIG 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + KA++ + VT+DL DRF AVDL +  A  +GG GGGGRP  AQ+GGP+G KA+  +
Sbjct: 817 V-NDGKAALAVGVTDDLKDRFVAVDLVKAGAAAVGGKGGGGRPDFAQAGGPDGAKANDGL 875

Query: 890 AGVASFL 896
           A + + L
Sbjct: 876 AAIRAAL 882


>gi|326317055|ref|YP_004234727.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373891|gb|ADX46160.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 876

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/910 (41%), Positives = 538/910 (59%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           S+V+ IR +FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 8   SSVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L 
Sbjct: 68  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYGLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSE
Sbjct: 128 KERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  IPGG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+
Sbjct: 188 IFYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF  LIQA+ + TG     N   + +VI DH+R+++FL++DG++P+
Sbjct: 248 AAILQHVHSNYEIDLFAALIQAAGRETGTADLAN--PSLKVIADHIRATAFLVSDGVIPS 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E L++
Sbjct: 306 NEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVKDLVQQMGDAYPKLREQEQRITEVLKA 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +
Sbjct: 366 EEERFFETLANGMDILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGVT-V 422

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   FN A++ Q+++ARA           K+  +L+    A +F GYD L          
Sbjct: 423 DEDGFNAAMDRQKAQARAAGK-------FKMDKALEYAGEANRFSGYDGLA--------- 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          S+ + AI   G   +   +GQ   VV D TPFYAE+GGQ+GD G 
Sbjct: 467 --------------ESAKIVAIYVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGV 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G R  + D  K    ++ HH  +E G LR   ++   +D   R     NHS TH++
Sbjct: 513 IHAGGARFAVDDTLKIRADVYGHHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIM 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  +  RFD  H+ P+T A+++ IE  VN+ I  N P   R+
Sbjct: 573 HKALREVLGSHVQQKGSLVNAERTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARV 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV+ TG+I L  +V E
Sbjct: 633 MDIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVARTGDIGLFKVVGE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEA+TG  A ++L   ++ +   A  L+     + GR+ +  ++ + L+  
Sbjct: 687 SGVAAGVRRIEAVTGAGALAYLQQLEDTVAKAAGALRAPASELAGRIGQALDQVKALERE 746

Query: 774 HA--KRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K KL  +  D    +  DV  +  + +     D+K L+  MD L+ K++S  I+L 
Sbjct: 747 VAALKGKLASSQGDELVGQAVDVKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +    K  +   VT D++ +  A +L    A  + GG GGG+P MA +GG +      A
Sbjct: 807 AV-DGAKVQIAAGVTPDVMAKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTDAAALPAA 864

Query: 889 IAGVASFLKK 898
           +A VA ++ +
Sbjct: 865 LASVAGWVGE 874


>gi|71735960|ref|YP_275660.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|83305854|sp|Q48G25|SYA_PSE14 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71556513|gb|AAZ35724.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 874

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|291279844|ref|YP_003496679.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754546|dbj|BAI80923.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 871

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/904 (41%), Positives = 540/904 (59%), Gaps = 42/904 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F+  GH  +PSSSL+P NDPTL+FTN+GM  FK++F G+EK  Y   
Sbjct: 1   MTGKEIREKFLKYFESKGHTRVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGREKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE +L 
Sbjct: 61  CSCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKEINLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LYITVY +D+EAF++W K  G+ AD+I R+   DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 121 ADKLYITVYKDDDEAFEIWNKHIGVPADRIYRMDEKDNFWAMGDTGPCGPCSEILIDQGP 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            I  G        + +R++E+WNLVFMQ+ +    +   LPK SIDTGMGLER+  V+Q+
Sbjct: 181 EIGCGRADCDPYCDCDRHLELWNLVFMQYNRDESGKLNPLPKPSIDTGMGLERVTAVVQK 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N+D DL K +I+ + +++   Y  N  +  + RVI DH R+++FLI+DG+LP+NEGR
Sbjct: 241 VPSNFDTDLIKPIIEYAAKLSNKNYGDNEKDDTSLRVIADHARATTFLISDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM + ++LG+ E     +   +C  M   Y EL+  K  + + ++ E+ER
Sbjct: 301 GYVLRRIMRRAMRHGKMLGFKESFFYQVCEFVCDFMNDPYIELMDKKSYVSKVVKFEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL+ GL + + +L    +++ + G   F+LYDT+G P+D++QDI+   G   +D++ 
Sbjct: 361 FNKTLETGLKIAEELLEKYKENKEIPGFEIFRLYDTYGFPVDLLQDIMEDNGYK-LDLVG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F++ +++Q+ RA+    G G      I+  L+ ++  T+FIGY+  +             
Sbjct: 420 FDEEMKKQQERAKNAWAGSGESFIADIYKKLENQF-KTEFIGYENTKS------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AIV+     +E     + E++ D+TPFY E+GGQ+GDTG    +
Sbjct: 467 -----------ESSVLAIVKDDNETQEISESSEFELILDKTPFYPESGGQVGDTGKIYNE 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++ D  KK   + VH + +  G ++    +   ID + R+    NH+ATHLLH AL
Sbjct: 516 NCNIEVLDC-KKVGNLIVHKSKLLSGKIKKGDKVTAVIDVEKRKNTERNHTATHLLHKAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + PD LRFD TH  P+   E+K IE  VN+ I +N+ V   I   E
Sbjct: 575 QMVLGDHVRQAGSLVAPDRLRFDFTHFAPVDDEEIKKIELLVNENIIKNIEVTKTIKPIE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +AI  GA AL G KY+  VRVV V        S  LCGG HV  TG+I +  IVSE+S+ 
Sbjct: 635 EAIKEGAMALFGEKYDKEVRVVEVPG-----FSKELCGGCHVGRTGDIGIFKIVSEASVA 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG  A       +   K  A  LK +  +V  ++ E+ E+ +  Q    K 
Sbjct: 690 AGIRRIEAVTGLEAVKFTQEINSIAKKSALLLKSNINDVPSKITELQEQLKNTQKELTKL 749

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +LN         +  +I  +  ++  +   +   L++ +D  + KI+SGI+ LVG   
Sbjct: 750 QDKLNASKAEDILSNVKEINGIKVLAIRMDNTEINALRNFVDMAKAKIKSGIV-LVGSVN 808

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K + L  VT+DL  ++ A D+ +  AK+ GGGGG G+P +AQ+GG N  K D+A+  +
Sbjct: 809 GDKVTFLCGVTKDLTSKYKAGDIVKEIAKITGGGGG-GKPELAQAGGKNPEKIDEALNHI 867

Query: 893 ASFL 896
            + L
Sbjct: 868 YNIL 871


>gi|257482821|ref|ZP_05636862.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628265|ref|ZP_06461219.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330866242|gb|EGH00951.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 874

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|303257717|ref|ZP_07343729.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000999|ref|ZP_08324635.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859687|gb|EFL82766.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329569774|gb|EGG51538.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 875

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/914 (41%), Positives = 552/914 (60%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR+TFL+F +  GH ++ SS ++P +DPTL+FTN+GM  FK+++ G +K  Y  
Sbjct: 1   MFTASEIRSTFLKFMESKGHTIVASSPVVPGDDPTLLFTNAGMNQFKDVYLGFDKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT+ F L
Sbjct: 61  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKNAWELLTEHFKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCS
Sbjct: 121 PPEKLWVTVYAEDDEAYNIWNKEVGIPADRIVRIGDNKGARFASDNFWMMGDTGPCGPCS 180

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  + GG PGS  E+G+RY+EIWNLVFMQF +  K     LP+ S+DTGMGLER
Sbjct: 181 EIFYDHGPSVAGGPPGSPDEDGDRYMEIWNLVFMQFNRDEKGVMHKLPRPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQAS---EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           ++ VLQ   +NY+IDLF++L++A     +  G +    N  + +VI DH+R+ +F+IADG
Sbjct: 241 ISAVLQGVHSNYEIDLFQNLMKAVIDEVKAAGAEDVDPNSPSVKVIADHIRACTFIIADG 300

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGR YVLRRI RR M +   LG  +    +L+ A+  EMG  YPE+      I+E
Sbjct: 301 VVPGNEGRSYVLRRIARRGMRHGFKLGARKLFFSNLVKAVAKEMGDQYPEIRN--PHIQE 358

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            LR E+ RF +TL +GL +L+  L+     +IL GDVAFKL+DT+G P+D+  D+   + 
Sbjct: 359 VLRQEEVRFSQTLSKGLDILNEALA--SGTKILGGDVAFKLHDTYGFPVDLTADVCREKN 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           ++ +D   F+  +E+QR +ARA           K+   L+ +   T+F+GYD L      
Sbjct: 417 VS-VDFEGFDALMEKQREQARAKGK-------FKMAQGLEYEGKPTEFLGYDTL------ 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                              +  V+AI + GE V++A +G +V VVFD+TPFYAE+GGQ+G
Sbjct: 463 ----------------TVQACRVEAIYKDGEPVKDAEAGDEVVVVFDRTPFYAESGGQMG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G        L++ D  K    +F H   V  G ++        +D +NR   + NHS 
Sbjct: 507 DKGTFKNKTTILKVDDTFKIKANVFGHMCYVAEGEVKVGDLFSAQVDEENREATARNHSV 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  ++  +ED VN  I +N P 
Sbjct: 567 THLMHKALREVLGAHVQQRGSMVNGDRTRFDFVHTSPMTREQINEVEDIVNKEILRNAPT 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            TR+M  ++A  + A  L G KY + VRV+++        S  LCGGTHV  TG+I +  
Sbjct: 627 QTRVMPIDEAKKTNAVMLFGEKYGENVRVLNIGS------SCELCGGTHVQRTGDIGMFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+SES I AG+RR+EA+TG  A  +   Q+E ++ +A  LK     VV +V +  E  ++
Sbjct: 681 IISESGISAGVRRVEAVTGMAALHYAQNQEEIIREVAEELKAPALEVVSKVVDTVEHLKR 740

Query: 770 LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGI 824
            +      K++           +  DVN ++ +++E   +++KEL++ +D L+ +++SG+
Sbjct: 741 TEKDLNALKVKFAQAGAAHMASQAQDVNGVAVLVTEMKGIETKELRNSVDGLKDQLKSGV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L+  S++ KAS  + VT+DL+ +  A D+ +  A+ L GG GGGRP  AQ GG     
Sbjct: 801 IVLIK-SEDGKASAAVGVTKDLVGKIKAGDVMKFVAEQL-GGKGGGRPDFAQGGGAAPAD 858

Query: 885 ADQAIAGVASFLKK 898
            +  +    +F+ +
Sbjct: 859 MNALLGKTRTFITE 872


>gi|260574639|ref|ZP_05842642.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259023056|gb|EEW26349.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 882

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/891 (48%), Positives = 566/891 (63%), Gaps = 40/891 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFLEFFQ+NGH ++ SS L+P NDPTLMF NSGMV FKN FTG E   Y  
Sbjct: 1   MPSLNDIRSTFLEFFQRNGHRVVESSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPYAWELLTRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WK+++GL   +IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKDKLLVTVYHTDDEAANIWKRVAGLPDSRIIRIPTDDNFWRMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  ++G+R+IEIWNLVFMQ EQ        LPK SIDTGMGLER+  +LQ 
Sbjct: 181 DKIWGGPPGSADQDGDRFIEIWNLVFMQNEQFADGRLVPLPKQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+NEGRGY
Sbjct: 241 KHDNYDTDLMRALIEASAHATSTDPDGEGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +PLM  L+PAL  +MG AYPEL +A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGAQDPLMHRLVPALVRQMGGAYPELTRAQALIEETLQLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LL   LS + +   L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLERGLHLLADELSRIPEGAALPGEAAFKLYDTYGFPLDLTQDALREQG-RSVDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G     KIWF + E +G ++F+GYD                  
Sbjct: 420 AAMAEQKAKARASWAGSGETGDAKIWFQIAEDFGPSEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V  G  V+ A  G +V++V +QTPFYAE+GGQ+GD G    +  
Sbjct: 463 ------ETAEGQVLALVADGAAVQTA--GARVQIVVNQTPFYAESGGQVGDAGWIRTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+TD  KKA G+ +H A V  G +       L +D+  R  +  NHSATHLL+ AL  
Sbjct: 515 VAQVTDT-KKAAGVVIHVAEVTEGQISQGQPAKLEVDHSRRAAIRANHSATHLLNEALRR 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K +T +EL  +E  VN +I QN PV TR+M  +DA
Sbjct: 574 ALGDHVAQRGSLNAADRLRFDFSHAKGMTPSELAQVEAEVNAVIRQNSPVETRLMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          DG  +S  LCGGTHV+  GEI    I+S
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGALAGSGKGSDGQTYSLELCGGTHVARLGEIGSFLILS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+  +GIRRIEAITG+     +      L++ A+ L     ++  R++ +  E + LQ 
Sbjct: 694 ESASASGIRRIEAITGEGVLRDVRANYAHLEAAAAALGAVPADLAPRIKALMAERKALQN 753

Query: 773 IHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             A+ + ++      E      I  V F++ ++S V  K+L  ++D ++ ++ SG ++L+
Sbjct: 754 EVAQLRREVAMGGRAEGPEAKDINGVKFIAQVLSGVSGKDLPGLIDEMKARLGSGAVLLI 813

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
                 K +V   VT DL+ R +AV L + +A+ +GG GGGGRP MAQ+GG
Sbjct: 814 A-DTGGKPAVAAGVTGDLVARLSAVALVKAAAEAMGGKGGGGRPDMAQAGG 863


>gi|329890683|ref|ZP_08269026.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
 gi|328845984|gb|EGF95548.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568]
          Length = 881

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/905 (46%), Positives = 579/905 (63%), Gaps = 33/905 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++  IR+TFL++F  +GHE + S+ L+P NDPTL+F N+GMVPFK+ FTG   P Y+ 
Sbjct: 1   MTSLKQIRSTFLDYFAADGHEKVQSAPLVPQNDPTLLFVNAGMVPFKDYFTGAAVPPYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLTKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIESAWGLLTKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TVY  D++AF +WKK++G + +KIIRI TNDNFW+M ++GPCGPC+EIF+D G
Sbjct: 121 DPARLLVTVYHTDDQAFDIWKKVTGFADEKIIRIPTNDNFWAMGDSGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R++EIWN VFMQFE++N +    LPK S+DTGMGLER+A VLQ 
Sbjct: 181 DHIFGGPPGSPDEDGDRFVEIWNNVFMQFEKENDEIVRELPKKSVDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD+DLFK LI ASE++T  K EG    +HRVI DHLRS++FLIADG+ P+NEGRGY
Sbjct: 241 VHSNYDVDLFKSLINASEELTSTKAEGERAPSHRVIADHLRSTAFLIADGVTPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+P L  EMG AYPEL +A+  IE+TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVQEMGEAYPELGRAQAFIEDTLKQEEIRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RG+ L D   +     ++L+G  AF LYDT+G PLD+ QD    RG + +++  F 
Sbjct: 361 TTLGRGMNLFDQATTGFKAGDMLDGQTAFTLYDTYGFPLDLTQDEARRRGFS-VNVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQR R+R H  G G   +   W +L++++G T+F GY+   G              
Sbjct: 420 SAMAEQRDRSREHWKGSGQTASAGAWLALRDQHGGTEFTGYESETG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V AIV+ G     A +G+ VEV+ D+TPFY E GGQ GD G  +  G 
Sbjct: 466 ---------EGKVLAIVKDGAEAASAATGETVEVLLDKTPFYGEGGGQAGDKGAFVWSGG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D +K    + VH   V +G L     +  T++  +R     NHSA HL H A+  
Sbjct: 517 EGRVLDTKKHGGDLHVHTLEVTKGALAAGAVVTATVEEGSRPTTRANHSAAHLFHAAVKN 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV+Q G  +  + +RFD +H+ P+T  E+  +ED VN +I QN+PV T +M  + A
Sbjct: 577 VLGAHVAQKGQMVDAERMRFDFSHNAPMTDEEIARVEDEVNAVIRQNVPVTTELMTPDAA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA+GA AL G KY D VRV+++       G +S  LCGGTHV  TG+I L  IVSE  + 
Sbjct: 637 IAAGAVALFGEKYGDEVRVLTIGRALSGPGAYSVELCGGTHVFRTGDIALFKIVSEGGVA 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+TG+ AR  L+ Q    +SLA   K+    V  RVE +    + L+   A  
Sbjct: 697 AGVRRVEALTGEAARRFLLDQANVARSLAQGFKIQTAEVPARVEGLQASVKTLEKQVADL 756

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +   +       +I  +  M+ ++  VD K L+ V +  +K+I SG++ LVG+  
Sbjct: 757 KKQLALGGGAGANAAPEEIGGIKLMARVLDGVDGKGLRGVAEDFKKQIGSGVVALVGVV- 815

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + KA++ +  T D+  + NA DLAR +   +GG G GG+P  AQ G P+G+KA+  +  +
Sbjct: 816 DGKAAITVAATPDMAGKVNAADLARDAVIAMGGKGAGGKPDFAQGGAPDGSKAEDGLNAI 875

Query: 893 ASFLK 897
            + LK
Sbjct: 876 RAALK 880


>gi|326577502|gb|EGE27382.1| alanyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 893

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/919 (40%), Positives = 527/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEAITG  A +++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAITGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKTLRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|262279704|ref|ZP_06057489.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262260055|gb|EEY78788.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 883

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/914 (43%), Positives = 531/914 (58%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   LMTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +  
Sbjct: 65  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RLY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G+ I GGLPGS  E+G+R+IEIWN VFMQF + N      LP  S+DTGMGL
Sbjct: 185 CSEIFFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTNDGVLHPLPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 245 ERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 302

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE T
Sbjct: 303 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEAT 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R  
Sbjct: 363 LVREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + S+ +  G TQF GY    G     
Sbjct: 422 I-IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGYINTTG----- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 470 ------------------QGQIIAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSAT
Sbjct: 512 TGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V 
Sbjct: 571 HLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVT 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY + VRV+++    D    S  LCGG HV  TG+I L  
Sbjct: 631 TELLDIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFK 690

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    
Sbjct: 691 ITSEGGVAAGVRRIEAVTGTKALDVVQKTDSDIQHINGLLKAQKDQTVERVQANVELVSA 750

Query: 770 LQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ    +   +L      +L      IA    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 751 LQKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|205830264|sp|A9M198|SYA_NEIM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/910 (41%), Positives = 528/910 (58%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 -LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   AK K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELAKAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKLP 859

Query: 887 QAIAGVASFL 896
           + +  V S+L
Sbjct: 860 EMLVSVESWL 869


>gi|104782873|ref|YP_609371.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|122402439|sp|Q1I6Z8|SYA_PSEE4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|95111860|emb|CAK16584.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 874

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/913 (42%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWNFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W +  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYASDDEAYDIWTQEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NY+IDLF+ L+ A+ +  G     +   + +V+ DH+RS  FLIADG+
Sbjct: 240 ERISAVMQHVHSNYEIDLFQSLLAAAAEAIGC--SNDEQPSLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL TEMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFHKIVAALVTEMGEAFPELKGQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L + +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKTEEEQFAKTLEQGLRILEQDLAQL-QGKVVPGDVVFKLYDTYGFPMDLTGDIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RAR+ S           + SL +   AT F+GYD   G     
Sbjct: 417 T-IDEAGFEREMEAQRERARSAS------AFGMDYNSLVKVDTATDFLGYDTTEG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ + G+ VE+   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 465 ------------------QGKVIALYKDGQSVEQLTEGEEGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  + D  K   G F+HH ++  G L    ++   +D   +   S+NHSAT
Sbjct: 507 SGYLQAGAARFDVRDTTK-TGGAFLHHGVIASGALTVGATVDARVDADVQHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   ++K++ED VN  + +N  V 
Sbjct: 566 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKALEDIVNREVRRNTEVQ 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEAITG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 682 ISEGGVASGVRRIEAITGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A V+GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSEHEGKVVLVAGVTKDLSGQLKAGDLMKQAAAVVGGKGG-GRPDMAQGGGVDVASL 859

Query: 886 DQAIAGVASFLKK 898
           DQA+A    F ++
Sbjct: 860 DQALALAVPFAEQ 872


>gi|269214760|ref|ZP_05987102.2| alanine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209090|gb|EEZ75545.1| alanine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 885

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/912 (41%), Positives = 529/912 (58%), Gaps = 56/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF++L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQNLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 310 LPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L  +   T+F GY   +      
Sbjct: 428 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYEGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 577 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFLK 897
            + +A    ++K
Sbjct: 870 PEMLASAEGWVK 881


>gi|316983845|gb|EFV62825.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76]
 gi|325199806|gb|ADY95261.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 874

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/910 (40%), Positives = 523/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RIAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L  +   + L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENAL--VKGGKTLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
             +  V  ++
Sbjct: 860 AVLDSVKDWV 869


>gi|299770946|ref|YP_003732972.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701034|gb|ADI91599.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 883

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/914 (42%), Positives = 529/914 (57%), Gaps = 52/914 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   LMTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +  
Sbjct: 65  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RLY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G+ I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 185 CSEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + RV+ DH RS  FLIADG+
Sbjct: 245 ERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSLRVVADHARSCCFLIADGV 302

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE T
Sbjct: 303 NPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEAT 362

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R  
Sbjct: 363 LVREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDF 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +  QR RAR       +G     + S+ +  G TQF GY    G     
Sbjct: 422 I-IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGYINTTG----- 469

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GD
Sbjct: 470 ------------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGD 511

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSAT
Sbjct: 512 TGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSAT 570

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V 
Sbjct: 571 HLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVT 630

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTHVSSTGEIMLLY 709
           T +++ E A A GA  L G KY + VRV+++    D    S  LCGG HV  TG+I L  
Sbjct: 631 TELLDIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFK 690

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE  + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    
Sbjct: 691 ITSEGGVAAGVRRIEAVTGTKALEVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSA 750

Query: 770 LQL--IHAKRKLQLNVEDLSCHKIADVNF---MSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ       +KL          ++  ++    +   +  VD+K L+++ D+++ K+++ +
Sbjct: 751 LQKQIEQLNQKLANFQASELIDQVQTISGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K
Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868

Query: 885 ADQAIAGVASFLKK 898
             Q IA + ++L++
Sbjct: 869 FGQVIAALPAWLEQ 882


>gi|330881471|gb|EGH15620.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 874

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTPVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  +   VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLAAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|161870450|ref|YP_001599622.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|161596003|gb|ABX73663.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 885

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 529/911 (58%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 428 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 577 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   AK K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELAKAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|326571434|gb|EGE21449.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 893

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/919 (40%), Positives = 527/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + ++L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|326567519|gb|EGE17634.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 893

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/919 (40%), Positives = 526/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIVSEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +L     N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKLASLHANSLTDNLKDIHGQKVLIATVNGMDNKTLRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|320323208|gb|EFW79296.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329761|gb|EFW85750.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 874

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  +   VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLAAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|289650414|ref|ZP_06481757.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 874

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/913 (43%), Positives = 542/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQLLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|218768564|ref|YP_002343076.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|20532265|sp|Q9JTG4|SYA_NEIMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|121052572|emb|CAM08912.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 874

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/910 (41%), Positives = 528/910 (58%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 -LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKLP 859

Query: 887 QAIAGVASFL 896
           + +  V S+L
Sbjct: 860 EMLVSVESWL 869


>gi|326561486|gb|EGE11830.1| alanyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
          Length = 893

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/919 (40%), Positives = 526/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|326569365|gb|EGE19425.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 893

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/919 (40%), Positives = 526/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIVSEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|15677445|ref|NP_274601.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|20532266|sp|Q9JYG6|SYA_NEIMB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|7226845|gb|AAF41948.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58]
          Length = 874

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/910 (40%), Positives = 523/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RIAAVMQHVHSNYEIDLFQDLLKAVARETGAPFRMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L  +   + L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENAL--VKGGKTLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
             +  V  ++
Sbjct: 860 AVLDSVKDWV 869


>gi|325140755|gb|EGC63269.1| alanyl-tRNA synthetase [Neisseria meningitidis CU385]
          Length = 881

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/911 (40%), Positives = 524/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 7   IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 67  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 127 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 187 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 247 ERIAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L  +   + L G++ FKLYDT+G P D+  DI   R +
Sbjct: 366 LKNEESRFAQTLETGMALLENAL--VKGGKTLGGEIIFKLYDTYGFPYDLTADICRERNI 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 424 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 471 ------------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 513 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 573 HLMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 633 AAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 688 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 747

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 748 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 866 PAVLDSVKDWV 876


>gi|253997271|ref|YP_003049335.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983950|gb|ACT48808.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 878

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/916 (41%), Positives = 525/916 (57%), Gaps = 72/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GHE++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 9   PSSNEIRQAFLDFFASKGHEIVSSSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+LLT+ F L 
Sbjct: 69  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKYAWELLTEVFKLP 128

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +W  I G+ A++IIRI  N       DNFW M +TGPCGPC+E
Sbjct: 129 KDKLTVTVYAEDDEAYAIWNNIIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTE 188

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G    GG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 189 IFYDHGAHHFGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + VLQ    NY+IDLF+ LI A+ + T  K    +I + +V+ DH+R+ SFLIADG++  
Sbjct: 249 SAVLQHVHANYEIDLFQTLIAAAARET--KTADLSIPSLKVLADHIRACSFLIADGVIAG 306

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL+  +  I E L+ 
Sbjct: 307 NEGRGYVLRRIIRRAIRHGYKLGVRSAFFHKIVPDLVAEMGDAYPELVSNQARITEILKQ 366

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++RF +T++ G+ +L+  L+     ++ NG+ AFKL+DT+G PLD+  DI   R +A +
Sbjct: 367 EEDRFFETIENGMAILESELASTK--DVFNGETAFKLHDTYGFPLDLTADICRERNVA-V 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D  +FN A+  Q+ +ARA           K+  +L+    AT F GYD L  S       
Sbjct: 424 DTDAFNAAMARQKEQARAAGK-------FKMTANLEYDGVATNFHGYDKLETS------- 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V A+ + G  V +   G+   VV D TPFYAE+GGQ+GD G 
Sbjct: 470 ----------------ATVTALYKDGVAVTKLTEGEVGVVVLDNTPFYAESGGQIGDCGE 513

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G     +  D QK    +F HH +++ G L     +   ++ Q R     NHSATHL+
Sbjct: 514 LRGTNGIFEAEDTQKIQATVFGHHGVLKTGTLSVGEQVSARVNTQARTNTMRNHSATHLM 573

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS +  D  RFD  H+ P+T  E+  +E  VN  I  N     R+
Sbjct: 574 HKALREVLGEHVQQKGSLVDTDKTRFDFVHTAPMTDDEIAKVEQIVNAEILANAACQARV 633

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A  +GA  L G KY D VRV+ +        S  LCGGTHV+ TG+I L  I SE
Sbjct: 634 MDIESAQNTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVNRTGDIGLFKITSE 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RR+EA TG+ A   +  Q   + +LA+ LK     +  +V ++ +  + L+  
Sbjct: 688 SGVAAGVRRVEATTGEGALKLINAQQTLISALANDLKAPVNELASKVAQLSDHAKSLEKE 747

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A+ K +L             +IA V  ++  +   D+  L+  MD L+ K++S  I+L 
Sbjct: 748 LARLKSKLASSQGDDLATQAVEIAGVKVLAATLDGADANALRETMDKLKDKLKSAAIVLA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGP 880
            +S + K S+   VT DL  +  A +L    A         G+        P MA +GG 
Sbjct: 808 SVS-DGKVSLAAGVTADLTSKVKAGELVNFVA---------GQVGGKGGGKPDMAMAGGS 857

Query: 881 NGNKADQAIAGVASFL 896
           + ++  QA+A V  ++
Sbjct: 858 DASQLPQALASVNDWV 873


>gi|293608692|ref|ZP_06690995.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829265|gb|EFF87627.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 878

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/913 (43%), Positives = 528/913 (57%), Gaps = 52/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  A++ AW+ LT  +   
Sbjct: 61  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY TVY  D+EA+ +W K  GL+ ++IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NYDIDLF+HL++A+  + G++ +G    + RV+ DH RS  FLIADG+ 
Sbjct: 241 RISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDQGQ--PSLRVVADHARSCCFLIADGVN 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPEL   K +IE TL
Sbjct: 299 PSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYDT+G P D+  DI   R   
Sbjct: 359 IREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F   +  QR RAR       +G     + ++ +  G TQF GY    G      
Sbjct: 418 -IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGYINTTG------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               + AI + G  V+E   G +  +V +QTPFYAE+GGQ+GDT
Sbjct: 465 -----------------QGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDT 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ D  KK+ G FVH  IV  G L+ + ++   +    R   + NHSATH
Sbjct: 508 GIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ +E  VN  I  N  V T
Sbjct: 567 LLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTT 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +++ E A A GA  L G KY D VRV+S+    D    S  LCGG HV  TG+I L  I
Sbjct: 627 ELLDIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE  + AG+RRIEA+TG +A   +   D  ++ +   LK  +   V RV+   E    L
Sbjct: 687 TSEGGVAAGVRRIEAVTGTKALDVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSAL 746

Query: 771 QLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q    +   +L      +L      IA    +   +  VD+K L+++ D+++ K+++ II
Sbjct: 747 QKQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAII 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G+  + K S+L  V         A D+ +  A  L GG GGG+P +AQ G P   K 
Sbjct: 807 VLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKF 864

Query: 886 DQAIAGVASFLKK 898
            Q IA + ++L++
Sbjct: 865 GQVIAALPAWLEQ 877


>gi|319410810|emb|CBY91198.1| alanyl-tRNA synthetase [Neisseria meningitidis WUE 2594]
          Length = 885

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 529/911 (58%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 428 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 577 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY + VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|254673270|emb|CBA08330.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 885

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 530/911 (58%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 428 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 577 HLMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|86146326|ref|ZP_01064650.1| alanyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85835805|gb|EAQ53939.1| alanyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 860

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/907 (41%), Positives = 531/907 (58%), Gaps = 61/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ ADKI+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G     N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAADELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNDALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G       
Sbjct: 419 IDEEGFEKAMEAQRKRAREA------GQFGTDYNATIKVDTNTEFCGYTGTEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------AGEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +  T+D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVQDTQKLGNA-FAHHGELVEGVFAQGDKVEATVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q              +  +    ++     +++QL
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQA----------NAYEEKLAESAKKAKSLEKEIQL 733

Query: 773 IHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K         +    +I+    +   I   D+K L++++D  + ++ SGII L+   
Sbjct: 734 LKEKMAAAEGANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-LIANV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +A+  
Sbjct: 793 ADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPEALKS 851

Query: 892 VASFLKK 898
           V  +L++
Sbjct: 852 VRIWLEE 858


>gi|325128607|gb|EGC51476.1| alanyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 874

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 524/911 (57%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 359 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNI 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 417 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 464 ------------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 566 HLMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K +  I+
Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSEQAIV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NEGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 858

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 859 PAVLDSVKDWV 869


>gi|209694226|ref|YP_002262154.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208008177|emb|CAQ78320.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 860

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/905 (41%), Positives = 533/905 (58%), Gaps = 58/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  +L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             RL +T+Y+ D+EAF++W K  G+ AD+I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 123 ADRLLVTIYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER+
Sbjct: 183 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRLADGTMEPLPKPSVDTGMGIERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A ++Q   +NY+ID+F+ LI+ + +V G  Y+  +  + RV+ DH+RS S+LI DG++P+
Sbjct: 243 AAIMQGVHSNYEIDIFQTLIKETAKVVG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ L+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKI 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E FG+TL+RG+V+L+  L +L +  +L+G+  FKLYDT+G P D+  D+   R L  I
Sbjct: 361 EEENFGRTLERGMVILNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERELT-I 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F +A+ EQR RAR        G     + ++ +    T F GYD            
Sbjct: 419 DEDGFEKAMNEQRQRAREA------GQFGTDYNAVIKVESETVFHGYDFTE--------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  I  +GE VE   +G    ++ D TPFYAE+GGQ GD G 
Sbjct: 464 --------------AKATVLEIFCEGEAVETLSAGDDAILILDVTPFYAESGGQSGDAGI 509

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  +  +TD QK    I  HH  +  G+L T    +  +D + R  +++NHSATHLL
Sbjct: 510 ITVEAGKFVVTDTQKVGNAI-GHHGKLVEGVLSTADRAMAQVDEERRTAITLNHSATHLL 568

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD ++ + +   EL+ +E  VN  +  N  + T +
Sbjct: 569 HAALRQVLGEHVTQKGSLVKAESLRFDFSNLEGVKPEELRLVERIVNQQVRLNHAIETDL 628

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ + A   GA AL G KY+D VRV+S+     G  S+ LCGG H SSTG+I L  I SE
Sbjct: 629 MDVDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AGIRRIEA+TG+ A   +  Q +              +   + + + +E ++L+  
Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIESQQKLADK-------KLHDASSKTKLLEKEIQQLKDK 736

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            A +     +       I+ V  +   +   D+K L+ ++D L+ +I SG+IM +G   +
Sbjct: 737 LASQASSDLIS--QVQDISGVKVLITQLDGADNKALRGMVDELKNQIGSGVIM-IGNVSD 793

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K  ++  VT+DL+ +  A +L  + A  + GG GGGRP MAQ+GG +      A+A V 
Sbjct: 794 DKVGLIAGVTKDLIGQVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAKALPAALATVE 852

Query: 894 SFLKK 898
           ++L +
Sbjct: 853 AWLTE 857


>gi|5834358|gb|AAD53924.1|AF179611_8 alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 888

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/916 (48%), Positives = 587/916 (64%), Gaps = 47/916 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPS----SSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP 56
           M   + IR +F   F+K      PS    + L+P NDPTLMF N+GMVPFKN FTG E  
Sbjct: 1   MITTNEIRRSFSRIFRKE----WPSDSTIAPLVPQNDPTLMFVNAGMVPFKNTFTGLESR 56

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+  T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TK
Sbjct: 57  PYKTATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E+ LD  RL +TVY  DEEAF LW+KI+GL  D+II+I T+DNFWSM +TGPCGPCSEIF
Sbjct: 117 EWGLDPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIF 176

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +D G  IPG    + E+G+R++EIWNLVFMQ+EQ N + R  LP+ SIDTGMGLER+A+V
Sbjct: 177 YDHGPEIPGASGLADEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASV 236

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NYD D FK LI AS ++T    +G    +HRVI DHLR++ FL+ADG+LPANEG
Sbjct: 237 LQGVHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM +A L+G  EPLM  L+PAL +EMG AYPEL++AK LIEETLR E+ 
Sbjct: 297 RGYVLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEET 356

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TL  GL +L     HL   + L G VAF+LYDT+G P D+  D L AR L  +D  
Sbjct: 357 RFRQTLANGLKILKDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQA 415

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+ EQR  ARA   G G   +++IWF + ++ G T+F GY   +GS          
Sbjct: 416 GFDAAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKGS---------- 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          + A+++ G+ VE A  G  + ++ +QTPFY E+GGQ GD G   G
Sbjct: 466 -------------GQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITG 512

Query: 537 DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +  +++ +TD QK    I  H A +E+G ++    + L +D  +R +L  NHSATHLLH 
Sbjct: 513 NNDLKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHA 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HVSQ GS ++ + LRFD +H K ++  EL +IE  VN  I  N  V TR+M 
Sbjct: 573 ALRDQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMT 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            E A+ +GA AL G KY + VRV+S+        +    S  LCGGTHVS+ G+I L +I
Sbjct: 633 PESAVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHI 692

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE+++ +GIRRIEA+TG+ AR  L+G+D  L+  AS LK     V  R   I +E RK 
Sbjct: 693 VSETAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKC 752

Query: 771 QLIHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           Q   A +K              + +  K+   +F+  +I  ++ K L  ++D  +K I+S
Sbjct: 753 QRSLADQKALAFANANCGQGGNNAAPDKLGAYHFIGQVIEGLEPKALLGLIDENKKIIES 812

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G+I L+ +  E +ASV I V++ L  + +AVDL R + + LGG GGGGRP MAQ GGPNG
Sbjct: 813 GVIALITV-NEGRASVAIGVSDSLKGKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNG 871

Query: 883 NKADQAIAGVASFLKK 898
           N+A QA+  V + L+K
Sbjct: 872 NEAAQALEAVKALLEK 887


>gi|298488157|ref|ZP_07006194.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157436|gb|EFH98519.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 874

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V ++ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVSLYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D        +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDMSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|84686864|ref|ZP_01014748.1| alanyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665061|gb|EAQ11541.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 882

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/892 (47%), Positives = 576/892 (64%), Gaps = 40/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+KNGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E   Y  
Sbjct: 1   MASLNDIRSTFLSYFEKNGHTVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+EF +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIPFAWELITREFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D+EAF++WKK+ G+  ++IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   TG+   G++ V+HRVI DHLRS+SFL+ADG++P+NEGRGY
Sbjct: 240 SHDNYDTDLFKALIEASAHATGVDPYGDHNVHHRVIADHLRSTSFLMADGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L  +MG AYPEL QA+ +IEETL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPELVRQMGQAYPELGQAQSMIEETLLTEETRFQ 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L+ L +   L G+ AFKLYDT G PLD+ QD L  +    +D   F+
Sbjct: 360 ATLDRGLKLLDEELAKLPEGAALPGEAAFKLYDTFGFPLDLTQDALREKD-RLVDTEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +W+ + E+ G T+F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWSGSGEAADATVWYDIAEEKGTTEFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V  G+  ++  +G  V++V +QTPFYAEAGGQ+GDTG    +  
Sbjct: 462 ------EKAEGQIVALVADGDKTDKVDTG-SVQIVVNQTPFYAEAGGQVGDTGTITTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++TD  KK  G+F+H A V  G +       LT+++  R  +  NHSATHLLH AL  
Sbjct: 515 KARVTDT-KKVAGVFIHFAEVVEGSIERGQGAELTVEHDRRSAIRANHSATHLLHEALRE 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H+K +T+ E+  +E +VN  + QN PV TRIM  +DA
Sbjct: 574 ALGDHVAQRGSLNAPDRLRFDFSHNKALTADEIGRVERDVNAYVRQNTPVETRIMAPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+         D   +S  LCGGTHV  TG+I    + +E
Sbjct: 634 RALGAQALFGEKYGDEVRVVSMGRAATGKGVDKETYSIELCGGTHVKRTGDIGAFVLTAE 693

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S+  AG+RRIEA+TG+ A   L  ++  +  +   LKVS+ +V+ R++ + +E + L  Q
Sbjct: 694 SASSAGVRRIEALTGEAAMGELRRREMLMSEVEGLLKVSEQDVLTRLQALLDERKTLAGQ 753

Query: 772 LIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   +R+L ++          ++  V F +  ++ V  ++L  ++D  + ++ SG ++L+
Sbjct: 754 VDQLRRELAMSGGAGAGPDAEQVNGVAFFAQSLTGVSGRDLPPLIDEHKARLGSGAVLLI 813

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
               + KA+V   VT DL D  +AVDL R +   LGG GGGGRP MAQ GG 
Sbjct: 814 A-DVDGKAAVAAGVTPDLTDTVSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 864


>gi|326576631|gb|EGE26538.1| alanyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 893

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/919 (40%), Positives = 526/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  I     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASIYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLIDWIGE 890


>gi|237799115|ref|ZP_04587576.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021969|gb|EGI02026.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 874

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/894 (43%), Positives = 532/894 (59%), Gaps = 56/894 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G      N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--NNENQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLAEL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEEGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G  V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ATVVALYKEGLSVTHLNEGEEGVVILDSTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G  +    R  ++D  K   G F+HH +V  G L     +   +  + R   ++NHSAT
Sbjct: 507 SGFLLAGDARFDVSDTTK-TGGAFLHHGVVASGSLNVGAQVETQVADEVRDATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N PV+
Sbjct: 566 HLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNTEIRKNTPVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TEETDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAAQDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGG 853


>gi|121635253|ref|YP_975498.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|205830172|sp|A1KV20|SYA_NEIMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120866959|emb|CAM10719.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325138605|gb|EGC61164.1| alanyl-tRNA synthetase [Neisseria meningitidis ES14902]
 gi|325142798|gb|EGC65170.1| alanyl-tRNA synthetase [Neisseria meningitidis 961-5945]
 gi|325198706|gb|ADY94162.1| alanyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 874

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 526/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+   K   L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 -LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKLP 859

Query: 887 QAIAGVASFL 896
             +  V  ++
Sbjct: 860 AVLDSVKDWV 869


>gi|331012342|gb|EGH92398.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 874

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/913 (43%), Positives = 541/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+   I   R L
Sbjct: 358 LKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGGIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS    
Sbjct: 417 T-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ASVVALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G      +R  ++D  K   G F+HH +V  G L     +   +  + R    +NHSAT
Sbjct: 507 SGFLHAGDVRFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N  V+
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVM 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L  I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++  + E  R  
Sbjct: 682 VSEGGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D    +   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DSALALAVPFVEQ 872


>gi|325132719|gb|EGC55402.1| alanyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 881

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/911 (40%), Positives = 527/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 7   IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 67  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 127 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 187 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 247 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+   K   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 366 LKNEESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNI 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 424 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD
Sbjct: 471 ------------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 513 VGYIFSGENRFEVLDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 573 HLMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 633 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 688 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 747

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 748 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 808 LLAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 865

Query: 886 DQAIAGVASFL 896
              +  V  ++
Sbjct: 866 PAVLDSVKDWV 876


>gi|218710534|ref|YP_002418155.1| alanyl-tRNa synthetase [Vibrio splendidus LGP32]
 gi|218323553|emb|CAV19764.1| Alanyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 860

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/907 (41%), Positives = 530/907 (58%), Gaps = 61/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF++W K  G+ ADKI+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G     N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNDALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G       
Sbjct: 419 IDEAGFEKAMEAQRKRAREA------GQFGTDYNATIKVDTNTEFCGYTGTEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------AGEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +   +D + R  +S+NHSATHL
Sbjct: 510 TLSTASGLFKVQDTQKLGNA-FSHHGELVEGVFAQGDKVEARVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AG+RRIEA+TG+ A   +  Q              +  +    ++     +++QL
Sbjct: 684 EGGIAAGVRRIEAVTGEAALDAVEAQA----------NAYEEKLAESAKKAKSLEKEIQL 733

Query: 773 IHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K         +    +I+    +   I   D+K L++++D  + ++ SGII L+   
Sbjct: 734 LKEKMAAAEGANIMGKVEEISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGII-LIANV 792

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +A+  
Sbjct: 793 ADGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPEALKS 851

Query: 892 VASFLKK 898
           V  +L++
Sbjct: 852 VRIWLEE 858


>gi|254670010|emb|CBA04754.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha153]
          Length = 885

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 530/911 (58%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + ++ IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 428 E-LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 577 HLMHKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 812 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKL 869

Query: 886 DQAIAGVASFL 896
            + +  V S+L
Sbjct: 870 PEMLVSVESWL 880


>gi|296112817|ref|YP_003626755.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295920511|gb|ADG60862.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 893

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/919 (40%), Positives = 525/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSGDLLRFDFSYDKPLTEQNINQIETMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKITMTASVGKHLTSKIKAGDIIKHLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|84390150|ref|ZP_00991412.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376804|gb|EAP93679.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 860

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/907 (41%), Positives = 531/907 (58%), Gaps = 61/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+   H+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + RL +TVY+ D+EAF +W K  G+ ADKI+RI           DNFW+M +TGPCGPC+
Sbjct: 123 KDRLLVTVYETDDEAFDIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK ++DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G     N   + RVI DH+RS SFLIADG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQ--SLRVIADHIRSCSFLIADGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   +G        L+  L   MGSA  EL + + L+E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+V+L+  L  L + + L+G+  FKLYDT+G P D+  D+   R    
Sbjct: 361 IEEENFGRTLERGMVILNDALDAL-EGKELDGETVFKLYDTYGFPADLTNDVARERDFT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR RAR        G     + +  +    T+F GY    G       
Sbjct: 419 IDEEGFEKAMEAQRKRAREA------GQFGTDYNATLKVDTNTEFCGYTATEG------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +  + A+   GE V    +G K  ++ ++TPFYAE+GGQ GD G
Sbjct: 466 ----------------AGEISALFVDGEEVPSLSAGDKAIIILEETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D QK     F HH  +  G+      +   +D + R  +S+NHSATHL
Sbjct: 510 TLKTASGLFKVQDTQKLGNA-FAHHGELVEGVFAQGDKVEAIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + PD LRFD ++ + +T A++K +E  VN  + +N  + T 
Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I AGIRRIEA+TG+ A   +  Q              +  +    ++     + +QL
Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQA----------NAYEEKLAESAKKAKSLEKDIQL 733

Query: 773 IHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K     +   +     I+    +   I   D+K L++++D  + ++ SGII++  I+
Sbjct: 734 LKEKMAAAESANIMGKVEDISGTKVLVAAIEGADNKNLRTMVDNAKNQVGSGIILIANIA 793

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG +     +A+  
Sbjct: 794 -DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPEALKS 851

Query: 892 VASFLKK 898
           V ++L++
Sbjct: 852 VRTWLEE 858


>gi|52842026|ref|YP_095825.1| alanyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148359345|ref|YP_001250552.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|296107392|ref|YP_003619092.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|59798497|sp|Q5ZUJ9|SYA_LEGPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830130|sp|A5ICV6|SYA_LEGPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52629137|gb|AAU27878.1| alanyl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|148281118|gb|ABQ55206.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|295649293|gb|ADG25140.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610501|emb|CBX00082.1| alanyl-tRNA synthetase [Legionella pneumophila 130b]
          Length = 860

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/905 (41%), Positives = 548/905 (60%), Gaps = 53/905 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ 
Sbjct: 1   MKS-SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +
Sbjct: 60  AATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TVY ED EA  +W K   +S ++  R    DNFWSM +TGPCGPC+EIF+D G
Sbjct: 120 PAERLWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q 
Sbjct: 180 PEVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHPLPKPSVDTGMGLERLAAVIQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ID F++LI+A  Q+ G   + N+  + +VI DH+RS SFLI DG+LP+NEGRGY
Sbjct: 240 VHSNYEIDSFQYLIKAIAQL-GQDIDLNH-TSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P    L+  L   MG AYPELI +K  IE  L+ E+ +F 
Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFSKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL   + +L   E L+G+VAFKLYDT+G P+D+  DI+  +GL  ID+ +FN
Sbjct: 358 RTLEQGLRLLQDHIKNLQGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++QR +++A S           + ++ +    ++F GY+                  
Sbjct: 416 QLMQQQREQSQAASQFT------TDYHAVSQLDHQSEFHGYE------------------ 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + +  ++Q+G  V+    G K  V+ D TPFYAE+GGQ+GD G  IG   
Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEF 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             Q+ D QK  + + VH+  V +G L  ++ +   +D   R  + +NH+ATHLLH AL  
Sbjct: 507 TFQVDDTQKVGQAV-VHYGKVIKGELTLDLLIHAQVDNIRRDAIRLNHTATHLLHAALKK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+G HV Q GS +  +  RFD +H + +T  +++ IE+ VN  I  N  V+T++M+ E A
Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL G KY+D VRV+S+     G  S  LCGGTH   TG+I L  IV+E  I +G
Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-- 777
           IRRIE +TG+ A + +  Q   + +LA+ LK +  ++  +V ++  + +  + + AK   
Sbjct: 681 IRRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLS 740

Query: 778 -KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K Q +  D+     +I  +N +   +  +DS+ ++  MD L+ +I S +I+L  I ++ 
Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799

Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +V+  V+++++ +  +A  L R        G GGGR  MAQ GG      +  I  + 
Sbjct: 800 KMNVIAGVSKNIIGKAPSAAQLVRHLC-----GKGGGRDDMAQGGGGVPEDLNSKIKEIK 854

Query: 894 SFLKK 898
             ++K
Sbjct: 855 EMIEK 859


>gi|326565354|gb|EGE15532.1| alanyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 893

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/919 (40%), Positives = 526/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  I     E K ++   V + L  +  A ++ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASIYTADGEDKIAMTASVGKHLTGKIKAGNIIKHLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLTDWIGE 890


>gi|86138306|ref|ZP_01056880.1| alanyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85824831|gb|EAQ45032.1| alanyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 883

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/896 (48%), Positives = 576/896 (64%), Gaps = 39/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   YQ 
Sbjct: 1   MATLNDIRSTFLNYFAKQGHEIVDSSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF +WKK+ G+  D+IIRI T DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLLTTVYHTDDEAFAIWKKL-GVPEDRIIRIDTADNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWN+VFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEKFEDGSMTPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS  VT     G+  V+HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKSLIEASADVTSSDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+PAL  +MG+AYPEL QA+ +IEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGQAQSMIEETLKLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  +S L +   L G  AFKLYDT G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLERGLKLLDDEVSGLDEGAPLPGSAAFKLYDTFGFPLDLTQDALREKG-REVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      +WF + +K+GAT F+GY+                  
Sbjct: 419 SAMAEQKAKARAAWAGSGEAADSTVWFDIADKHGATDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G  V EA  G KV++V +QTPFYAE+GGQ+GD+G    DG 
Sbjct: 462 ------EIAEGQVVALVKDGGEVSEAGLGDKVQLVLNQTPFYAESGGQVGDSGEIRVDGG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +Q++D  KK+ G+F+H   V  G++       L +D   R  +  NHSATHLLH AL  
Sbjct: 516 LVQVSDT-KKSAGVFIHIGQVVEGLVTAGAPAQLVVDPTRRSAIRANHSATHLLHEALLE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H+K ++ AEL  +  +VN  I QN PV TRIM  +DA
Sbjct: 575 ALGEHVAQRGSLNADDRLRFDFSHTKALSDAELCQVSADVNAFIRQNTPVETRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED------GGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+   D      G  +S  LCGGTHV  TG+I    I+ +
Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKADTGKGQSGDTYSIELCGGTHVRQTGDIGTFVILGD 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S+  AG+RRIEA+TG  A  HL     ++  +A  LK   G+V+ R++ + +E + LQ  
Sbjct: 695 SASSAGVRRIEALTGAAAFEHLQRTAGQMAEIAGTLKAQPGDVMDRLKSMMDERKALQNE 754

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            +  K QL +       +   +I    F++  +  V  K+L++++DA ++ I SG+I+L+
Sbjct: 755 ISTLKQQLAMGGGAGGGVEAKEIGGKKFLAQALEGVSGKDLRALIDAHKQSIGSGVILLI 814

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +  K +V   VT+DL+   +AVD+ R +   +GG GGGGRP MAQ GG + + 
Sbjct: 815 A-EEGGKVAVAAGVTDDLIGDVSAVDVLRAAVPAVGGKGGGGRPDMAQGGGKDFDG 869


>gi|325267938|ref|ZP_08134587.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324980624|gb|EGC16287.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 873

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/912 (40%), Positives = 532/912 (58%), Gaps = 56/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y+  
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALT--KGSNKLDGEIIFKLYDTYGFPYDLTADICRERNI- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +E       A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREME-------AQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQETKIIALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITGQ A +    Q+  +K++ + +K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGQAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   AK K +L      + L   K      +     + D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIDADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + ++  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTNKVKAGDLIKFAAEQI-GGKGGGRPDLAQAGGTDASQVG 859

Query: 887 QAIAGVASFLKK 898
             +    S++++
Sbjct: 860 AMLDSAESWVRE 871


>gi|77460496|ref|YP_350003.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123603611|sp|Q3K892|SYA_PSEPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77384499|gb|ABA76012.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 874

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/913 (42%), Positives = 540/913 (59%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G   +     + +V+ DH+RS  FLIADG+
Sbjct: 240 ERISAVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLKILEQDLAEL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERSL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + +E QR RAR+ S      +    + SL +    T+F GY    GS    
Sbjct: 417 T-IDEAGFEREMEAQRVRARSAS------SFGLDYNSLVKVDVDTEFTGYHATSGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ + G+ V+    GQ+  VV +QTPFYAE+GGQ+GD
Sbjct: 466 -------------------AKVVALYKDGQSVDVLSEGQEGVVVLNQTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R  + D  K   G F+HH ++  G L     +   ++   R   S+NHSAT
Sbjct: 507 CGYLQAGNSRFDVRDTTK-TGGAFLHHGVLASGSLIVGAPVETHVEADVRHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N  V 
Sbjct: 566 HLLHAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + E A   GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I
Sbjct: 626 TEETDIETAKQKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIGLLKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R L
Sbjct: 682 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRAL 741

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +           S   +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G   E+K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG +    
Sbjct: 802 LL-GSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGAL 859

Query: 886 DQAIAGVASFLKK 898
           D A+A    F+++
Sbjct: 860 DGALALTVPFVEQ 872


>gi|114800099|ref|YP_761420.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123322977|sp|Q0BYM3|SYA_HYPNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114740273|gb|ABI78398.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 881

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/906 (50%), Positives = 591/906 (65%), Gaps = 35/906 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR TFL FF+KNGH   PS+ L+P NDPTL+F N+GMVPFKNIFTG EKP    
Sbjct: 1   MNGVNDIRETFLGFFEKNGHARRPSAPLVPQNDPTLLFVNAGMVPFKNIFTGAEKPFAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A+ LAW+L+TKE+ L
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAVALAWELVTKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY EDEEA  +WKK++GL   +IIRI T+DNFWSM +TGPCGPCSEIFFD G
Sbjct: 121 DAKRLLVTVYAEDEEAPAIWKKVAGLDDSRIIRIATSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + + GG PGS  E+G+R+IEIWNLVFMQFEQ    +R  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DKVAGGPPGSPDEDGDRFIEIWNLVFMQFEQHEGGKRTNLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+ LI A E+V G K  G+   + RVI DHLR+S+FL+ADGILP+NEGRGY
Sbjct: 241 VHNNYDIDLFRALIAAEEEVYGQKASGDKTASFRVIADHLRTSAFLVADGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  +LG  EP M  L+PAL  EMG AYPEL +A++ IE  +  E+ RF 
Sbjct: 301 VLRRIMRRAMRHGHMLGAREPQMHRLVPALVAEMGKAYPELGRAQVAIEAAIEQEEARFQ 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL  GL LLD   S L   E L GDVAF+L DT G PLD+ QDIL  RG+  +D+  F 
Sbjct: 361 RTLGNGLSLLDKAASELSPGEALPGDVAFRLSDTFGFPLDLTQDILRGRGIE-VDVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            AL+ QR  +RA     G   TE+IWFS++++ G T+F GY    G              
Sbjct: 420 TALDAQRETSRAGGFSSGDQATEEIWFSVRDEKGPTKFTGYSSTAG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                       + AI   G ++E   +G   E+VFD TPFYAE+GGQ GD G  +  DG
Sbjct: 466 ---------EGRLIAIAAGGALIETVTAG-PAELVFDATPFYAESGGQAGDHGEIVFEDG 515

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R  + DVQK+A  + VH   +  G ++T M   ++++   R+ +  NHSATHL+H AL 
Sbjct: 516 ARFVVRDVQKRAGDLHVHIGELVSGSVKTGMKAQMSVNAARRKAVMANHSATHLMHAALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +  D  RFD +H  P+T+A+L++IED VN  I  N+    ++   + 
Sbjct: 576 KVLGPHVTQKGSLVEADRFRFDFSHGAPVTAAQLEAIEDEVNAQIRANIETGIKVTTPDK 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI +GA AL G KY D VRV+S+    E G  +S  LCGG HVS +G+I +  I+SE  +
Sbjct: 636 AIEAGALALFGEKYGDEVRVLSMGDAGEGGRPYSVELCGGIHVSRSGDIAVFTILSEGGV 695

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI--H 774
            AGIRRIE  TG  A ++L G+ +    +A  LKV   ++  RV  + EE R L+     
Sbjct: 696 SAGIRRIEGATGAEALAYLKGRAQIAADVAESLKVPLKDLPRRVASLTEERRTLERELSE 755

Query: 775 AKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           AKRKL +            I  VN ++ +   V  KEL++++D  + KI SG+++     
Sbjct: 756 AKRKLAMGGGGGAPAGPEVINGVNLIARVAEGVGGKELRALVDEAKSKIGSGVVV-FVGV 814

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              KA V I VT+DL ++F+AV+L + +A  +GG GGGGRP MAQ+GGP+G+KA++A+  
Sbjct: 815 DGGKAGVAIGVTKDLTEKFSAVELVKAAAAAIGGQGGGGRPDMAQAGGPDGDKANEALEA 874

Query: 892 VASFLK 897
           V + LK
Sbjct: 875 VRAALK 880


>gi|326575283|gb|EGE25211.1| alanyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 893

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/919 (40%), Positives = 525/919 (57%), Gaps = 54/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  F++FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 4   MQSNEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 64  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLA 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC
Sbjct: 124 LPKDRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLE
Sbjct: 184 TEIFYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           R++ ++Q    NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG
Sbjct: 244 RISAIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADG 303

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+NEGRGYVLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+
Sbjct: 304 VIPSNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQ 363

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+E+F KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G
Sbjct: 364 AILKEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  ++ EQR+RAR        G     + +L +   AT+F+GY+ L      
Sbjct: 424 IT-IDEAGFELSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND--- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G
Sbjct: 474 --------------------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVG 513

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           + G    +     + D QK  + I  HH +V+ G +    S    +  Q R   + NHSA
Sbjct: 514 ELGEISTESGVFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSA 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P 
Sbjct: 573 THLLHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPA 632

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIML 707
              I++ + A   GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L
Sbjct: 633 HVEILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGL 692

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE  I AG+RRIEA+TG  A  ++   D++L  LA+  K  +  +  RV ++ ++ 
Sbjct: 693 FKIISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKN 752

Query: 768 RKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R L+    +   +      N    +   I     +   ++ +D+K L+++ D ++ K+  
Sbjct: 753 RHLEKQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLAD 812

Query: 823 GIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           GI++L  +     E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G 
Sbjct: 813 GIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGA 871

Query: 880 PNGNKADQAIAGVASFLKK 898
            +     + + G+  ++ +
Sbjct: 872 TDVANLPKLMTGLIDWIGE 890


>gi|59801613|ref|YP_208325.1| hypothetical protein NGO1254 [Neisseria gonorrhoeae FA 1090]
 gi|75432448|sp|Q5F7C4|SYA_NEIG1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|59718508|gb|AAW89913.1| putative alanyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 874

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/910 (41%), Positives = 523/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|134093868|ref|YP_001098943.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|205830068|sp|A4G2S9|SYA_HERAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|133737771|emb|CAL60816.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans]
          Length = 869

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/911 (40%), Positives = 530/911 (58%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FF+  GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K  Y  
Sbjct: 1   MKS-SEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  +W+LLTK + L
Sbjct: 60  ATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALMWSWELLTKVYGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              +L  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCS
Sbjct: 120 PGDKLLATVYIEDQEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCS 179

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF+         LP   +DTGMGLER
Sbjct: 180 EIFYDHGPHIAGGPPGSPDEDGDRYIEIWNNVFMQFDMAEDGTVKPLPAPCVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQ   +NY+ID F  LI+A+ + T  K   NN  + +VI DH+R+++FL+ADG++P
Sbjct: 240 LAAILQGVHSNYEIDTFAALIKAAGRETNTKDLTNN--SLKVIADHIRATAFLVADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV RRI+RRA+ +   LG  +P    L+  L  +MG AYP+L      I E L+
Sbjct: 298 SNEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLQADAQRITEVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT G PLD+  D+    G++ 
Sbjct: 358 AEEERFFETLANGMEILDAALA--GGVKVLPGEVAFKLHDTFGFPLDLSADVCREAGVS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+E+Q++  RA           K+  +++       F GY+ L+        
Sbjct: 415 VDEAGFAAAMEKQKAAGRAAGK-------FKMERAVEYTGAGNVFTGYENLQ-------- 459

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V  +  +G  V++   GQ   VV D TPFYAE+GGQ+GD G
Sbjct: 460 ---------------EDATVVGLYFEGTAVQQLKEGQAGIVVLDTTPFYAESGGQVGDQG 504

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G++  + D QK    ++ HH +  +G L+    +   +D   R     NHS TH+
Sbjct: 505 FVSAEGVQFGVEDTQKIKADVYGHHGVQTQGTLKVGDKVQAAVDGARRAATMRNHSVTHI 564

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV Q GS +  +  RFD  H+ P+T  ++  IE  VN  I  N     R
Sbjct: 565 MHKALREVLGEHVQQKGSLVDAEKTRFDFAHNAPVTHEQILEIEKRVNAEILANSDTQAR 624

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V 
Sbjct: 625 VMDIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVG 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG  A S+    +  + S A+ LK     +  R+ ++ ++ + L+ 
Sbjct: 679 ESGVAAGVRRIEAITGANALSYFQDLEATVHSAAATLKSPPAELQPRLAQVLDQVKTLER 738

Query: 773 I--HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K KL  +  D       +I  +  ++  +   D+  L++ MD L+ K+++  I+L
Sbjct: 739 EINALKGKLASSQGDELLSQAVEIKGIKVLAAKLENADAGTLRTTMDTLKDKLKTAAIVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K S++  VT D   +  A +L    A+ + GG GGGR  MAQ+GG + +    
Sbjct: 799 AAV-NDGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRADMAQAGGTDASGLPA 856

Query: 888 AIAGVASFLKK 898
           A+ GVA+++ +
Sbjct: 857 ALQGVAAWVAE 867


>gi|308048574|ref|YP_003912140.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
 gi|307630764|gb|ADN75066.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/896 (41%), Positives = 527/896 (58%), Gaps = 57/896 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IRT FLE+F+  GHE++ SSSL+P NDPTL+FTN+GM  FK+ F G E+  Y   
Sbjct: 3   MTTAEIRTAFLEYFRSQGHEVVASSSLVPHNDPTLLFTNAGMNQFKDCFLGAEQRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT+   L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKFAWQFLTEVLQLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
           + +L +TVY  D+EAF +W K  G++A+ IIRI           DNFW M +TGPCGPC+
Sbjct: 123 KDKLCVTVYHTDDEAFDIWNKEIGIAAENIIRIGDKPGKPAYTSDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PG   E+G+R+IEIWN+VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQFNRHADGTMDPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A ++Q   +NYDID+F+ LI+ + ++TG     N   + RV+ DH+RS ++LI DG++P
Sbjct: 243 VAAIMQGGHSNYDIDIFQRLIKKAAEITGTTDLDNK--SLRVVADHIRSCAYLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ + R LG  +     L+  L   MG+A  EL Q + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGRKLGANDTFFFKLVGELADVMGAAGEELKQQQAIVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F +TL+RG+ LL+  L +L   ++L+G   FKLYDT+G P D+  D+   RG + 
Sbjct: 361 IEEEGFARTLERGMQLLNEALDNL-DGDVLDGATVFKLYDTYGFPADLTNDVARERGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F   +E+QR RAR       +G     +  +      + F GYD           
Sbjct: 419 IDEDGFEVEMEQQRQRAR------DAGQFGTDYSKVVSIDSDSVFTGYDRTDD------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA--VSGQKVEVVFDQTPFYAEAGGQLGD 530
                              V AI+ +G  V+      G    +V DQ+PFYAE+GGQ+GD
Sbjct: 466 ----------------QGKVVAILVEGNEVDSLMGERGTDAVLVLDQSPFYAESGGQVGD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG         ++TD QK    I  H   +  G  +   ++   +D   R  + +NHSAT
Sbjct: 510 TGVIRCGDAEFEVTDTQKLGNAI-AHKGKLVSGAFQRGDAVAAEVDASRRDAIRLNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS +  D LRFD +H + ++  EL +IE+ VN+ I  N  + 
Sbjct: 569 HLLHAALRNLLGDHVTQKGSLVMADRLRFDFSHFEGVSRDELVAIENQVNEQIRANHSID 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M+ E A A GA AL G KY+D+VRV+++     G +S  LCGG H   TG+I    I
Sbjct: 629 TELMDIEAAKARGAMALFGEKYDDQVRVLAM-----GDYSIELCGGIHAKRTGDIGFFKI 683

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  I AGIRRIEA+TG  A +    Q+ +L   A+ +K    +V  +V+ + ++ R+L
Sbjct: 684 VSEGGIAAGIRRIEAVTGNGAVAFARSQENQLLETAALVKGDAQSVASKVKGLLDKNRQL 743

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + K +L          S   +  V  +   +   DSK L+ ++D L+ ++ SGI+
Sbjct: 744 EKELEQLKQKLASAASANLVDSAVDMGGVKVLISQLENADSKALRGMVDDLKNQMGSGIV 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L G   + K  ++  VT+DL  +  A +L  L A+ + GG GGGRP MA +GG +
Sbjct: 804 LL-GNVADGKVGLIAGVTKDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAMAGGTD 857


>gi|118340595|gb|ABK80645.1| putative alanyl-tRNA synthetase class IIc [uncultured marine
           Nitrospinaceae bacterium]
          Length = 878

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/907 (40%), Positives = 537/907 (59%), Gaps = 42/907 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  FL++F+  GH ++ S +L+P NDPTLMFTN+GMV FK++F G+EK  Y   
Sbjct: 1   MTGDELRKKFLQYFEDRGHTVVSSYALVPKNDPTLMFTNAGMVQFKDVFLGEEKRDYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKCVRAGGKHNDL+ VGRT+RHHTFFEMLGNFSFG YFK+ AIQ  W+ LT    L 
Sbjct: 61  VSVQKCVRAGGKHNDLEMVGRTSRHHTFFEMLGNFSFGDYFKKEAIQFGWEFLTDVIGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLYI+V+++D++AF +W     +  ++I ++   DNFW+M  TGPCGPCSEIF DQG+
Sbjct: 121 RDRLYISVFEDDDDAFNIWVDDIKMPRERIYKLGEKDNFWAMGSTGPCGPCSEIFIDQGK 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            I  G P      + +R++EIWNLVFMQ+++    +   LP   IDTGMGLER+A V+Q 
Sbjct: 181 AIGCGQPSCEVGCDCDRFLEIWNLVFMQYDRDKAGKLTPLPHPCIDTGMGLERLAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +T NYD DL   +I  + ++TG +Y   N   V+ RV+ DH R+S FLI+DG++P+NEGR
Sbjct: 241 RTTNYDTDLMMSIITVAARITGKEYGKQNEVDVSLRVLTDHARASVFLISDGVIPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ + +LL    P    +   +  +   AYPEL      I++ + +E+E 
Sbjct: 301 GYVLRKIIRRALRHGKLLEQKGPFFHRITSKVIEDFKGAYPELSGNSEFIQKVVINEEES 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL  G   L+ ++  + KD+   + G+  FKLYDT+G P D++++     GL  +D+
Sbjct: 361 FSNTLHYGTQRLEEIIEKVSKDKLCTIPGEEIFKLYDTYGFPTDLVEETAKDAGLT-LDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             + +A+ EQR++A     G G       +    +    T F GY   +G          
Sbjct: 420 EGYTRAMNEQRTKATNSWKGSGEKEVPPFYREFLQSSAPTVFEGYGTTQG---------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           + AI++    VE A +G ++E + D+TPFY E+GGQ GD+G A 
Sbjct: 470 -------------QGKILAILKDHAPVESASTGDEIEFLTDKTPFYGESGGQTGDSGRAS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + ++L + D  K   G+ VH A +  G +R   +L L +  Q R   ++NHSATHLL  
Sbjct: 517 NENVQLSLDDATKPLPGLIVHKAKIISGTMRNGETLKLEVHPQVRGNTALNHSATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H+ Q GS +  D LRFD TH  P+T  E   IE  VN+ I  N+ V T+ M+
Sbjct: 577 ALKEVLGEHIKQAGSLVASDRLRFDYTHFSPLTDKERVRIESRVNEKIRDNIQVATQEMD 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + AI  GA AL G KY D VRVV V        S  LCGGTHV++TG+I L  I SE S
Sbjct: 637 IDTAIKEGAVALFGEKYGDTVRVVDVLG-----FSKELCGGTHVNATGDIGLFRITSEGS 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RRIEA+TG +A +++  + E L ++   LK      + +++++ E+ R+L+    
Sbjct: 692 IASGVRRIEAVTGAKAYNNIQAEQESLAAIRVLLKAPSNEEITKLKKLLEKNRQLEKEIT 751

Query: 776 KRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K ++     +       KI DV+ +   I  +D+K L++ +D  + +++SGI+++ G 
Sbjct: 752 TLKEKMVNGQESSGLDEVQKIGDVSVLIKKIEGMDAKTLRTFIDNTKNQLKSGIVVV-GS 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K S+ + VT+DL  +++A ++ +  A V+ GG GGGRP MAQ+GGP   K DQA+ 
Sbjct: 811 VADGKVSMAVGVTKDLTGKYHAGNIIKSIA-VIVGGSGGGRPDMAQAGGPEIEKLDQALK 869

Query: 891 GVASFLK 897
                ++
Sbjct: 870 KAEELIR 876


>gi|260441692|ref|ZP_05795508.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 874

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|261364444|ref|ZP_05977327.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288567357|gb|EFC88917.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 873

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/912 (40%), Positives = 528/912 (57%), Gaps = 56/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALT--KGSNKLDGEIIFKLYDTYGFPYDLTADICRERNI- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +E       A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREME-------AQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQETKIIALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIFAGENRFRVEDTQKIKAAVHGQFGSVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S  LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   AK K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKALTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKLP 859

Query: 887 QAIAGVASFLKK 898
           + +  V  ++++
Sbjct: 860 EMLGSVEGWVRE 871


>gi|261379016|ref|ZP_05983589.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269144550|gb|EEZ70968.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 874

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 526/911 (57%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVHSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +   
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLS 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 -LDEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + GE V+E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D   R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDGIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVECRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKSL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   AK K +L      + L   K      +     E D+  L+ ++  L  K +  I++
Sbjct: 742 EKDLAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEADAAALREIVTDLTGKSEQAIVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKLP 859

Query: 887 QAIAGVASFLK 897
           + +  V  +++
Sbjct: 860 EMLGSVEDWVR 870


>gi|319790646|ref|YP_004152279.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317115148|gb|ADU97638.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 878

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/907 (41%), Positives = 544/907 (59%), Gaps = 43/907 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF++ GH  + SS L+P NDPTL+FTN+GMV FK+ F G+E+P ++  T
Sbjct: 4   SADRIRETFLKFFEEKGHARVKSSPLVPKNDPTLLFTNAGMVQFKDYFLGKEEPPFKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+ F L +
Sbjct: 64  SCQKCMRAGGKHNDLENVGRTGRHHTFFEMLGNFSFGDYFKEEAIKFAWELVTEVFKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY++VY EDEEAF++W+ + G+  ++I R+   DNFW+M +TGPCGPCSEI++D+GE 
Sbjct: 124 ERLYVSVYKEDEEAFRIWRDVVGVPQERIYRLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 183

Query: 183 IPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G      S + +RY+EIWNLVFMQFE+    +   L K SIDTGMGLER+A+VLQ  
Sbjct: 184 FACGPNCGIGSCDCDRYLEIWNLVFMQFERDESGKLRPLEKPSIDTGMGLERIASVLQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NY+ DL   L++ + +++G+ Y     +  + RVI DHLR+ +FLI+DG+LPANEGRG
Sbjct: 244 PSNYETDLLFPLVKWASKLSGVPYGRSEKSDTSMRVIADHLRAMTFLISDGVLPANEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + RLLG   P +   +  +   MG AYPEL  ++ L+E  +R E+ERF
Sbjct: 304 YVLRRIIRRASRHGRLLGIKGPFLYSGVKEVVKIMGKAYPELELSRELVERVVRREEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL+RGL +   ++  L    ++++ G   FKLYDT G P+D++ ++    GL  +D+ 
Sbjct: 364 SRTLERGLQIFQEIIDELKSRSEKVIPGSEVFKLYDTFGFPIDLVLEVANDEGLR-VDLE 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + L+EQR RAR    G            L  ++  T F GY+ L             
Sbjct: 423 GFEKLLKEQRERARKAWKGGAQKVVSPELQRLSLEH-PTLFTGYEHLEEY---------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  I++  E+VE    G++  V+ D+TPFY E GGQ+GDTG   G
Sbjct: 472 -------------AKVVGILKGEELVESISEGEEATVILDRTPFYPEKGGQVGDTGTLEG 518

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++TD Q   E +  H   V RG L     +   +D + RR ++  H+ATHLLH A
Sbjct: 519 TDSLCKVTDTQNITEKLIGHKVKVLRGKLSVGDYVEARVDEERRRAITRAHTATHLLHKA 578

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD LRFD TH +  T  EL+++E+ VN  I +N PV    M  
Sbjct: 579 LKEVLGNHVKQAGSLVLPDRLRFDFTHFEAPTKEELRAVEELVNRWITENYPVKIEEMPY 638

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+  GA AL G KY   VRVV       G  S  LCGGTHV  +G+I    + SESSI
Sbjct: 639 DEALERGAIALFGEKYGSVVRVVD-----VGGVSVELCGGTHVKRSGDIGFFKLTSESSI 693

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RR+EA+ G  A   +  +++ ++ L   L+  +  +  +VE + EE ++ +    +
Sbjct: 694 SSGTRRVEAVVGPEALKWVWEKEKLIEELKGALQSPEEQLTAKVERLKEELKEKERELEQ 753

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L    L     +  +      ++  +  +  +EL  + DAL+ K +S  +MLVG+ 
Sbjct: 754 LKRKLASGKLDELLKNAKEANGFKVITAKVDGLAGRELVDLADALRNKAKSAAVMLVGV- 812

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           K  KA+++I +T+DL +RF A +L R  A +L  G GGGRP +AQ G  + ++  +A   
Sbjct: 813 KGGKANLVIALTKDLTNRFKAGELIREVAPIL-QGKGGGRPDLAQGGVKDLSRLQEAFDK 871

Query: 892 VASFLKK 898
             S L +
Sbjct: 872 FYSLLTE 878


>gi|260433747|ref|ZP_05787718.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417575|gb|EEX10834.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 890

 Score =  937 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/902 (48%), Positives = 569/902 (63%), Gaps = 44/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGLETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF++WKK+ G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKNRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS+E +G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+P L   MG+ Y EL +A+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAEDPVMHRLVPTLVQLMGAQYSELGRAQALIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  ++ L  D  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDEEVAGLPDDAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G    + +WF + +  GAT F+GY+                  
Sbjct: 419 AAMAEQKAKARAAWAGSGEAADQAVWFDVLDAAGATDFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+++ G +VE+   G+   +V +QTPFY EAGGQ+GDTG       
Sbjct: 462 ------EKAEGQVLAVIRDGALVEKLEPGESGWIVSNQTPFYGEAGGQVGDTGVIRRLED 515

Query: 540 RLQ---ITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           R +   + D +K A+  +  H   VERG+      + L +D+  R  +  NHSATHLLH 
Sbjct: 516 RDEVALVEDTKKFADAKVIAHKVTVERGVFAKGEPVELEVDHARRSAIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS    D LRFD +H+K +T  E++++E  VN  I QN PV TRIM 
Sbjct: 576 ALRETLGEHVAQRGSLNAADRLRFDFSHTKAMTPEEIETVEREVNAFIRQNSPVETRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA   GA AL G KY D VRVVS+         DG   S  LCGGTHV  TG+I    
Sbjct: 636 PDDARKLGAQALFGEKYGDEVRVVSMGKAPTGKGHDGETWSIELCGGTHVRQTGDIGTFV 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+ +S+  AG+RRIEA+TG  A  +L  QD +L  +AS LK    +VV RV+ + +E + 
Sbjct: 696 ILGDSASSAGVRRIEALTGDAALEYLSTQDRRLAQVASELKAQPEDVVTRVKALLDERKA 755

Query: 770 LQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ + +L                +  + F++  +S V  K+L +++D  + ++ S
Sbjct: 756 LQNEVAQLRRELAMAGGAGQANGAVAKDVNGIKFLAQALSGVSGKDLPALIDEHKTRLGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G ++L+  S   KA+V   VT DL  + +AVDL R + + LGG GGGGRP MAQ GG + 
Sbjct: 816 GAVLLIADS-GGKAAVAAGVTSDLTQKISAVDLVRAAVQELGGKGGGGRPDMAQGGGRDP 874

Query: 883 NK 884
           + 
Sbjct: 875 SN 876


>gi|29654361|ref|NP_820053.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154706669|ref|YP_001424370.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|41018200|sp|Q83CQ6|SYA_COXBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830040|sp|A9KG28|SYA_COXBN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29541628|gb|AAO90567.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|154355955|gb|ABS77417.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 865

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/903 (41%), Positives = 547/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q  
Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +  +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTL--LKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   + + G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQ-IPGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D   R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVS-RFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|293399698|ref|ZP_06643850.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291609949|gb|EFF39072.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 881

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/911 (41%), Positives = 524/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 7   IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 67  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 127 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 187 CSEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 247 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 366 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 424 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 471 ------------------ESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 513 VGYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 573 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 633 AAIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 688 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 747

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I
Sbjct: 748 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|319779380|ref|YP_004130293.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317109404|gb|ADU92150.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 874

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/912 (42%), Positives = 554/912 (60%), Gaps = 55/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL+FF+   H ++ SS LIP NDPTL+FTN+GMV FK++F G+EK  Y   
Sbjct: 1   MKASEIRHNFLKFFESKNHTIVSSSPLIPANDPTLLFTNAGMVQFKDVFLGKEKRTYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+LLT  F L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAITYAWELLTTVFQLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EAF +W+   G+  +KIIRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KEKLLVTVYAEDDEAFGIWRDKVGVPEEKIIRIGDNKGSRYASDNFWQMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+R+IEIWNLVFMQFE+ ++     LPK  +DTGMGLER+
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRFIEIWNLVFMQFERDSEGVLHPLPKPCVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLFK+LI+A+   T      NN  + +VI DH+R+ SFLI DG++P 
Sbjct: 241 AAVLQHVHSNYEIDLFKNLIKAAAVATNTSDLENN--SLKVIADHIRACSFLICDGVIPG 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     L+PAL  EMG A+PELI+ +  I   L+ 
Sbjct: 299 NEGRGYVLRRIIRRALRHGHKLGQNKTFFHTLVPALTKEMGEAFPELIEWQDRISSILKQ 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E++RF +TLD G+ +L+  LS+L K + ++G   F LYDT+G P+D+  DI   RG+ G+
Sbjct: 359 EEDRFQETLDHGMKILESCLSNLEKGQNIDGQTLFILYDTYGFPVDLTADIARERGV-GV 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F +A+++Q+  ARA           K   +L      T F GY+ L  S+      
Sbjct: 418 DLDGFEKAMDKQKETARASGK-------FKAQENLSYSGTDTSFSGYEHLVESR------ 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + ++AI   G  VE A  GQ+V VV D+TPFYAE+GGQ+GD+G 
Sbjct: 465 ----------------ANIQAIYVDGASVESADEGQEVVVVLDRTPFYAESGGQVGDSGF 508

Query: 534 AIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
            IG     ++ I+D +K    +F H+  VE+G ++   S+   ++ +NR  ++ +HS TH
Sbjct: 509 LIGSDTDKQVSISDTRKITPTVFGHYGRVEKGSIKLNDSVDAIVNAENRVLVTAHHSVTH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +  +  RFD +H+ P+T  E++ +E  VN+ I        
Sbjct: 569 LMHLALREVLGDHVKQKGSLVDSEKTRFDFSHNSPMTEEEIRKVELLVNNQILMGRDTYV 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  +DA+ SGA  L G KY D VRV+ +        S  LCGGTHVS+TG+I L  I+
Sbjct: 629 EVMPYDDALKSGAIGLFGEKYGDFVRVMQIG------DSRELCGGTHVSNTGQIGLFKII 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + +G+RRIEA+ G +A   +      +   A+ LK S  ++V +++   ++   L+
Sbjct: 683 SESGVASGVRRIEAVAGFKALEWIQNTYRVINQSANLLKSSPKDLVSKIKIQIDQISALE 742

Query: 772 LI--HAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIM 826
               H K+KL           + +V+ +  +   + +V++K L+ ++D ++ K+ SG++ 
Sbjct: 743 KEITHLKQKLISASSGDLLSSLKEVSGIKTLACEVKDVETKALRDLVDQMKSKLGSGVVA 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +  +  + K ++   VT+DL  +  A DL    +++L GG GGGRP MA  GG       
Sbjct: 803 IFLVEGD-KVTIATGVTKDLTHKLKAGDLVSRLSQIL-GGKGGGRPDMAMGGGTKVEDLQ 860

Query: 887 QAIAGVASFLKK 898
           +AI  V +++K+
Sbjct: 861 KAILDVEAWVKE 872


>gi|268685404|ref|ZP_06152266.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268625688|gb|EEZ58088.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 874

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|225075679|ref|ZP_03718878.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens
           NRL30031/H210]
 gi|224952950|gb|EEG34159.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens
           NRL30031/H210]
          Length = 874

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/911 (41%), Positives = 525/911 (57%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 299 LPANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 359 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   FN+ +E       A      +  + K    L      T+F GY   +      
Sbjct: 417 -DLDEEGFNREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + GE V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 464 ------------------ESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGD 505

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 506 VGYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 566 HLMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVN 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 626 AAIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 681 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 740

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+ ++  L  K +  I+
Sbjct: 741 LEKELARAKAELAVHAGAKLLDDAKDLGSAKLVAAQIEADAAALREIVTDLTGKSEQAIV 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K 
Sbjct: 801 LLAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEKL 858

Query: 886 DQAIAGVASFL 896
              I  V  ++
Sbjct: 859 PAMIESVKDWV 869


>gi|163731786|ref|ZP_02139233.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161395240|gb|EDQ19562.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 885

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/911 (47%), Positives = 580/911 (63%), Gaps = 41/911 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T++  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWNLVTRDLGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY  DEEA  +WKK+ G+  D+II I TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLYVTVYHTDEEAAAIWKKV-GVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLTAQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL QA+ +I +TL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMITQTLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L+ L   + L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 360 QTLERGLKLLDDELNALPDGDDLPGAAAFKLYDTYGFPLDLTQDALREKG-RGVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      +WF + +  G T F+GYD                  
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADATVWFDVADAEGTTDFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+VQ G   + A +G+ V++  +QTPFYAE+GGQ+GD+G       
Sbjct: 462 ------EVAEGQIVALVQDGAATDTATTGETVQIALNQTPFYAESGGQVGDSGVIKTAKG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K A+ +FVH A V  G++    +  L +D   R  +  NHSATHLLH AL  
Sbjct: 516 TATVTDCRKTAD-VFVHTAKVTEGVISVGEAAQLAVDPARRTAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H++ ++S EL  +E +VN  I QN PV TRIM  + A
Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSSEELARVEADVNTYIRQNAPVETRIMTPDAA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  ++       G  +S  LCGGTHV  TG+I     + 
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSAKGLNGDTYSLELCGGTHVRQTGDIGAFVALG 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RRIEA+TG  A +HL  QD++L  +AS LK    +V  RV  + +E R L  
Sbjct: 695 DSASSAGVRRIEALTGAAALAHLRAQDQRLAEVASDLKAQAADVPERVRSLLDERRALSN 754

Query: 771 QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L ++    S       +A    ++ ++S V  K+L  ++D +++++ SG+++
Sbjct: 755 EVAQLRRELAMSGGSGSAAPDVKDVAGTPLLAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+    + KA+V   VT+DL ++ +AVDL + +   LGG GGGGRP MAQ G  + + AD
Sbjct: 815 LIA-DADGKAAVAAGVTKDLTEKVSAVDLVKAAVSALGGKGGGGRPDMAQGGAKDASNAD 873

Query: 887 QAIAGVASFLK 897
            AIA V + LK
Sbjct: 874 AAIAAVETVLK 884


>gi|94263078|ref|ZP_01286897.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93456621|gb|EAT06729.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
          Length = 925

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/909 (41%), Positives = 546/909 (60%), Gaps = 40/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + ++IR  FL++F    H ++ SS+L+P +DPTL+FTN+GMV FK +FTG+E+  Y+ 
Sbjct: 45  MMDGNTIRQKFLDYFASRQHTVVASSALVPHDDPTLLFTNAGMVQFKKVFTGEEQRDYRR 104

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAWD LT+E  L
Sbjct: 105 AVSCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWDFLTRELGL 164

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               L+++VY++D+EA ++W+ I GL   +I+R+   DNFW+M +TGPCGPCSEI  DQG
Sbjct: 165 SPANLWVSVYEDDDEAHRIWEGIEGLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHLDQG 224

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +P   P  G   + +R++EIWNLVFM++E+        LP+ SIDTGMGLER+A V+Q
Sbjct: 225 AAVPCQSPECGVDCDCDRFLEIWNLVFMEYERGADGTMKPLPRPSIDTGMGLERIAAVVQ 284

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K NNYD DLF  LI  + ++ G++Y          RVI DH R+++FL+ADG+LPANEG
Sbjct: 285 GKHNNYDSDLFLPLIHRTCELAGVEYGRSARVDTALRVIADHARATTFLVADGVLPANEG 344

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR+MRRA+ + R LG +EP +  +   +   MG AY  L  ++ L+ + +R E+E
Sbjct: 345 RGYVLRRVMRRAIRFGRGLGLSEPFLGEVCATVLETMGGAYSHLEASRELLRKVVRHEEE 404

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD GL +L   L+ L +     L G+  FKLYDT+G P+DI +D+    GLA  D
Sbjct: 405 RFLETLDHGLGMLAAELTRLKESGERGLAGEFIFKLYDTYGFPVDIAKDVAQEEGLAA-D 463

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F +A+  QR ++R    G G G     +  L E   +T+F+GY   R    +     
Sbjct: 464 EAGFEEAMARQRQQSRQSWKGGGLGELGPGFRELLEGGVSTEFVGYQSRRHHAPLT---- 519

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                               +   G+++  A +GQ+V +V  QTPFYAE GGQ+GD+G  
Sbjct: 520 ------------------ALLDVDGKMLNTATAGQQVVLVCSQTPFYAEGGGQIGDSGEI 561

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G   R ++ +  +  E +  H A V  G L     ++L +    R++++ +H+ATHLLH
Sbjct: 562 TGLHGRARVDNTIRVGEQLVAHQAEVVEGRLERGEEVLLAVGEGRRQRVAAHHTATHLLH 621

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P  LRFD TH  P+ +A ++ +E  VN  I  N  + T ++
Sbjct: 622 AALRRVLGEHVKQAGSLVEPGRLRFDFTHFSPLGTAAIREVERLVNVEIRANNSLETAMV 681

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           NR++A+ SGAAAL G KY + VRVV+V     G  S  LCGGTHV +TGEI L  I++E+
Sbjct: 682 NRDEALQSGAAALFGEKYGETVRVVTV-----GEFSKELCGGTHVGATGEIGLFRIIAEA 736

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I A  RRIEA+ G+ A       +++  +LA  LK   G + GR++++    ++L+   
Sbjct: 737 GIAASTRRIEAVCGEEALYRCQQLEDEWAALAGRLKCGPGELAGRIDKLLARQKELERKL 796

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+   Q +  DL        +I     ++  +     K L+ + D ++ K+ S  I ++ 
Sbjct: 797 AQMASQASGFDLERELSRVREIGGARLLACRVPADSVKTLRELGDKVRDKLGSTGIAVLA 856

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + + ++L +V ++L  R+ A +L +  A ++ GG GGGRP MAQ+GG +    DQA+
Sbjct: 857 AEIDGQVALLALVGKELQGRYKAGELVKQVAALV-GGKGGGRPDMAQAGGGDPAGIDQAL 915

Query: 890 AGVASFLKK 898
           A V   ++K
Sbjct: 916 AAVPEIVEK 924


>gi|260427849|ref|ZP_05781828.1| alanyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260422341|gb|EEX15592.1| alanyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 906

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/895 (48%), Positives = 566/895 (63%), Gaps = 43/895 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F+K GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 18  MQSLNDIRSTFLGYFEKQGHEVVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T+E D+
Sbjct: 78  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKSEAIPFAWELVTRELDI 137

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D+EA ++WKK +G+  D+IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 138 DPKRLLVTVYHTDDEAAEIWKK-TGVPEDRIIRIATSDNFWMMGPTGPCGPCTEIFFDHG 196

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS E +G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 197 DKYWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRRELAAQSIDTGMGIERVAALLQG 256

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS  VT    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 257 TNDNYSTDLIRSLIEASADVTSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 316

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 317 VLRRIMRRAMRHAHMLGSKDPVMYRLVPALVRQMGAAYPELVRAQPLIEETLKLEETRFK 376

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  L     L G  AFKLYDT+G PLD+ QD L  R    +D   F+
Sbjct: 377 QTLDRGLKLLDEELVSLPAGASLPGATAFKLYDTYGFPLDLTQDALRERERT-VDTDGFD 435

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF + +++GAT F+GYD                  
Sbjct: 436 AAMSEQKAKARAAWSGTGEAADLAIWFEIADQHGATDFLGYDT----------------- 478

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIG 536
                       +  +V+ G  VE   +G+   VV +QTPFY E+GGQ+GDTG       
Sbjct: 479 ------ETAEGQMLTLVRDGVEVEALEAGETGWVVLNQTPFYGESGGQVGDTGFLRRLED 532

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +    ++TD QK   G I  H   V +G      ++ L +D++ R  +  NHSATHLLH 
Sbjct: 533 EHDMAEVTDTQKMGGGKITAHQVTVRQGRFVKGDAVALEVDHKRRGMIRANHSATHLLHE 592

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   PD LRFD +H+K +T+ E+  +E  VN  I QN PV TRIM 
Sbjct: 593 ALRRALGPHVAQRGSLNAPDRLRFDFSHAKALTAEEIAQVETEVNAFIRQNAPVTTRIMT 652

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I   
Sbjct: 653 PDDARAIGAQALFGEKYGDEVRVVSMGELAGSGKGGDGKTYSLELCGGTHVRQTGDIGTF 712

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SES+  AG+RRIEA+TG+ A + L G+D  L  +   LK    + V RV  + +E R
Sbjct: 713 ALTSESASAAGVRRIEALTGEAAMAELRGRDHALSRIEGLLKAHGPDAVARVAALLDERR 772

Query: 769 KL--QLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L  ++   +R L +     E      +  V F++ ++S V  K+L  ++D  + ++ SG
Sbjct: 773 RLDNEVAQLRRDLAMAGGPGEGPELRDVGGVPFVAQVLSGVQGKDLPPLIDEHKARLGSG 832

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            ++L+      K +V   VTEDL    +AVDL + + + LGG GGGGRP +AQ G
Sbjct: 833 AVLLIA-DTGGKVAVAAGVTEDLTGNVSAVDLVKAAVEALGGKGGGGRPDLAQGG 886


>gi|320354759|ref|YP_004196098.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320123261|gb|ADW18807.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 882

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/909 (42%), Positives = 541/909 (59%), Gaps = 45/909 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLEFF+  GH  + +SSL+P +DPTL+FTNSGMV FK +F G+E   Y   
Sbjct: 1   MTGNEIRACFLEFFESKGHTRVAASSLVPHDDPTLLFTNSGMVQFKKVFMGEETRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q  VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTK+  LD
Sbjct: 61  TTAQSSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWEFLTKKLGLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY++D+EA++LW++I  L   +I+R+   DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 121 PNKLWVSVYNDDDEAYRLWERIEDLPKGRIVRMGEKDNFWAMGDTGPCGPCSEIHIDQGA 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P  +   + +R++E+WNLVFMQF +        LPK SIDTGMGLER+A VLQ 
Sbjct: 181 EVGCGRPDCALGCDCDRFLELWNLVFMQFYRDEHGTMTPLPKPSIDTGMGLERVAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K NN+D DLF  +I     + G KY  N  + V+ RVI DH R+++FL+ADG+LP+NEGR
Sbjct: 241 KFNNFDCDLFTPIIDHVAALAGKKYHENRADDVSMRVIADHARATTFLVADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R LG +      +   +   M  AYP L   + L+ + + +E++R
Sbjct: 301 GYVLRRIMRRAIRYGRALGLS-SFFPGVCALVTELMVHAYPHLGDTRELLAKVVTNEEQR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           FG+TLD GL  L+  +  L K E    +++GD  FKLYDT+G P+DI++DI   +G+A  
Sbjct: 360 FGETLDHGLNKLEQEIRRLKKAEGERAVIHGDFIFKLYDTYGFPVDIVRDIAIEKGIA-F 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F QA+E+QR ++R    G      E     L  +    +FIGY    G        
Sbjct: 419 DEPGFAQAMEQQREQSRKSWKGSDVDHLEAGIIELGSRGLKAEFIGYATTHG-------- 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                       + V  IV A    G++V EA +G+ + +   QTPFYAE+GGQ+GD G 
Sbjct: 471 -----------VSTVEGIVNA---SGQLVHEAKAGETLRLFCAQTPFYAESGGQIGDQGE 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  R  ++      EG+ +H   + +G L T   + L +    R   ++NH+ATHLL
Sbjct: 517 ITWEDGRFVVSKTLAPVEGLILHEGQIAQGTLTTGTRVELQV-ADRRTDTALNHTATHLL 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+  +LG HV Q GS +  + LRFD TH  P+T  E+ +IE  VN  I +N PV T +
Sbjct: 576 QAAMKKVLGDHVKQAGSAVDHNRLRFDFTHFSPLTHGEICTIEQLVNAQIRRNTPVDTTL 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + RE AIA GA AL G KY + VRVV +     G  S  LCGGTH   TG+I L  IV E
Sbjct: 636 LGREQAIAEGATALFGEKYGEEVRVVRI-----GDFSKELCGGTHARMTGDIGLFKIVME 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AG+RRIEA+TG  A   +     +  ++++ L       V +++ + + +++L+  
Sbjct: 691 TGIAAGVRRIEAVTGAGAIHWVQELARQANAISAVLSGPLDGAVDKIQGLLKRHKELEKQ 750

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A     + + DL        ++  +  ++  +     K L+ + D ++ ++QSGII+L 
Sbjct: 751 IAALNASMALSDLDQLLASSIELDGMRVVASRVPLDSPKTLREIGDKIRDRMQSGIIVL- 809

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G   E KA++L +V++DL  R  A DL   +A V+ GG GGGRP MAQ+GGP  +K D+A
Sbjct: 810 GGEFEGKAALLAMVSKDLTGRIKAGDLVNRAA-VIVGGKGGGRPDMAQAGGPMPDKLDEA 868

Query: 889 IAGVASFLK 897
           I  VAS +K
Sbjct: 869 INSVASIIK 877


>gi|291045073|ref|ZP_06570781.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011076|gb|EFE03073.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 881

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/911 (40%), Positives = 523/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 7   IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 67  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 127 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 187 CSEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 247 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 366 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 424 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 471 ------------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 513 VGYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 573 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 633 AAIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 688 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 747

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I
Sbjct: 748 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|289208781|ref|YP_003460847.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288944412|gb|ADC72111.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 869

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/909 (41%), Positives = 533/909 (58%), Gaps = 53/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR +FLEFF+ +GH ++ SS L+P NDPTL+FTN+GMV FK++F G+EK  Y  
Sbjct: 1   MKS-ADIRRSFLEFFEGHGHTIVSSSPLVPGNDPTLLFTNAGMVQFKDVFLGREKRSYNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+   L
Sbjct: 60  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWQFLTETIGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEI 175
              +L++TVY+ D++A+ +W     + A++I+RI        DNFW M +TGPCGPC+E+
Sbjct: 120 PPEKLWVTVYETDDDAYNVWANEIQVPAERIVRIGDKPDGGSDNFWQMGDTGPCGPCTEV 179

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  + GG PGS  E+G+RYIEIWNLVFMQ+++        LP+ S+DTGMGLER+A
Sbjct: 180 FYDHGPEVEGGPPGSPDEDGDRYIEIWNLVFMQYDRDADGTLNPLPRPSVDTGMGLERLA 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ   +NY+IDLF+ LI A+ +VTG K    +  + RVI DH+RS +FLI DG+LP+N
Sbjct: 240 AVLQGVHSNYEIDLFQDLIAAAARVTGAK--EQDSASLRVIADHIRSIAFLITDGVLPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +   +G  +  +  ++  L   MG A+PEL +A+  +E+ L  E
Sbjct: 298 EGRGYVLRRIIRRAARHGFKVGAQDAFLYQMVGDLVRVMGEAFPELAEAQARVEQVLEKE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F +TLD+G+ +L+  L  L + +++ G+  F LYDT+G P+D+  DI   RGL  +D
Sbjct: 358 ERKFLETLDKGMKILEDDLRDL-EGKVIPGETIFLLYDTYGFPVDLTGDIARERGLE-LD 415

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F        + A   +    +         L +    T F GY+ +           
Sbjct: 416 MAGFES------AMADQRARARAASHFSMDDGGLPQIDLETTFSGYETVDD--------- 460

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+ Q GE VE    G +  VV D+TPFY E+GGQ+GD G  
Sbjct: 461 --------------EGRVVALYQNGEPVERLEVGAEGLVVLDRTPFYGESGGQVGDVGTL 506

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G G+R Q+ D +K+     +H   V  G L    +L   ++   R  +  +HSATHLLH
Sbjct: 507 SGSGVRFQVADTRKQ-GAAHIHVGQVRAGTLEVGQTLQAAVEGPRRENIRRHHSATHLLH 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL   LG HV Q GS + PD LRFD TH +P+T  +L++IE  VN  I  N    TR+M
Sbjct: 566 KALRDQLGDHVQQKGSLVDPDRLRFDFTHMEPLTDEQLRAIEAQVNAEILANEATDTRVM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A+ SGA AL G KY D+VRV+ +        S  LCGGTHV  TG+I L  I SE 
Sbjct: 626 DIESAMESGAVALFGEKYGDQVRVLKIG------TSVELCGGTHVDRTGDIGLFRITSEG 679

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AGIRRIEA+ G+ A   +  Q   L ++A  L+  +G    +V ++ E  R+L+   
Sbjct: 680 GVAAGIRRIEAVAGEVALRWVDEQLGYLDAIADRLRAGRGEAADKVAQLQERSRELEKQI 739

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + K +L  +          ++  V  ++  I  V+ K L+ ++D L++K+   +++L  
Sbjct: 740 EQLKGKLASQAGSDLASQAQEVGGVQVLAAKIDGVEPKALRDMVDQLKQKLGKAVVVLGT 799

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + E K S++  VT+    +F A DL    A  +  G GGGRP MA +GG + +K D A+
Sbjct: 800 ATGEGKVSLVAGVTKAETGQFKAGDLVGHVAAQV-DGKGGGRPDMAMAGGQSPDKLDAAL 858

Query: 890 AGVASFLKK 898
           A VA ++++
Sbjct: 859 ASVADWVRE 867


>gi|194097831|ref|YP_002000876.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|239998317|ref|ZP_04718241.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240014513|ref|ZP_04721426.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240113728|ref|ZP_04728218.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240116471|ref|ZP_04730533.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|240121035|ref|ZP_04733997.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
 gi|240125067|ref|ZP_04737953.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|254494482|ref|ZP_05107653.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268599798|ref|ZP_06133965.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268602141|ref|ZP_06136308.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268683663|ref|ZP_06150525.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|193933121|gb|ACF28945.1| AlaS [Neisseria gonorrhoeae NCCP11945]
 gi|226513522|gb|EEH62867.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268583929|gb|EEZ48605.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|268586272|gb|EEZ50948.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268623947|gb|EEZ56347.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 874

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|90408728|ref|ZP_01216876.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90310179|gb|EAS38316.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 869

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/902 (41%), Positives = 533/902 (59%), Gaps = 46/902 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + + S IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G E+  Y  
Sbjct: 4   IKSTSEIRQGFLDFFANKGHQVVSSSSLVPANDPTLLFTNAGMNQFKDTFLGSEQRSYVR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E  L
Sbjct: 64  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWEYLTVELGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L+ITVYD+D EA K+W +  G+    + RI   DNFWSM +TGPCGPC+EIF+D G
Sbjct: 124 PKEKLWITVYDKDPEAEKIWIEEIGVDPACLSRIGAKDNFWSMGDTGPCGPCTEIFYDHG 183

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E I GG PG   E+G+RYIEIWNLVFMQ+ +        LPK S+DTGMGLER++ +LQ 
Sbjct: 184 EHIWGGPPGTPEEDGDRYIEIWNLVFMQYNRHADGTMVDLPKPSVDTGMGLERISAILQN 243

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+   +VTG     +   + RV+ DH+RS  FLI DG++P+NEGRGY
Sbjct: 244 CHSNYEIDLFQALIKKVAEVTGATDLEDK--SLRVVADHIRSCGFLICDGVMPSNEGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG        +   L  +MG  YPEL + +  +E+ LR E+E+F 
Sbjct: 302 VLRRIIRRAVRHGNKLGAQGVFFFKIYGELILQMGDTYPELGKQRDFVEKILRLEEEQFA 361

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RGL +LD  L  L +  +++G+  FKLYDT+G P D+  DI   R L  IDI  FN
Sbjct: 362 KTLVRGLQILDNALESL-EGNVISGETVFKLYDTYGFPADLTADIARERDLI-IDIDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++EQR+RA+              +    +    TQF+GY+ L+ S             
Sbjct: 420 TLMDEQRTRAK------KVDHFGTDYNDGLKFDEKTQFLGYEHLQHS------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  +V++GE+V     G+   V+  QTPFYAE+GGQ+GD+G  +    
Sbjct: 461 ----------ATVSILVKEGELVPALNQGEHGHVILKQTPFYAESGGQVGDSGRLVLKDG 510

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD  KK+   F+H   VE G +     ++  +D + R+ ++++HSATHLLH AL  
Sbjct: 511 IFNVTDT-KKSGDTFLHIGYVESGNISVHDEIIAEVDSERRKAIALHHSATHLLHAALRQ 569

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H + ++S  L+ +   VN  I  N+ V+T++ + E+A
Sbjct: 570 TLGEHVTQKGSLCDADKLRFDFSHFEGLSSQVLEQVNYLVNSAIRDNVSVLTKLSDIEEA 629

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL G KY++ VRVVS+     G  S+ LCGGTH S TG + L +I SES I AG
Sbjct: 630 KTAGAMALFGEKYDEMVRVVSM-----GALSTELCGGTHTSRTGNMGLFFIRSESGIAAG 684

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA  G+ A   L     +       +K    ++  ++ +  E  R L+      K+
Sbjct: 685 VRRIEACVGKAAELALHDVMSQFTKSCELVKGDASSLSDKILQTLERNRALEKELHTLKI 744

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++          +   I  V  +   +  +D K L+  +DA++ K+QSGI++L     + 
Sbjct: 745 KMAASAGSDLVANAIIINGVKVVIADLPGIDPKSLRDSVDAMKNKMQSGIVVLGTAVADD 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+++ VT+DL  +  A +L  + A  + GG GGGRP MA +GG + +    A+A V  
Sbjct: 805 KVSLIVGVTKDLTKKVKAGELVNVVAAPV-GGKGGGRPDMAMAGGNDASALKAALALVEP 863

Query: 895 FL 896
           +L
Sbjct: 864 WL 865


>gi|309378363|emb|CBX23009.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 874

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/910 (41%), Positives = 525/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI LAW+ LT  K  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHLAWEFLTSPKCLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+E + +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLPTVYAEDDEPYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L  +   T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYEGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------EAKVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVSVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K +  I++
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSEQAIVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEKLP 859

Query: 887 QAIAGVASFL 896
             I  V  ++
Sbjct: 860 AMIDSVKDWV 869


>gi|255319660|ref|ZP_05360869.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262378543|ref|ZP_06071700.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255303277|gb|EET82485.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262299828|gb|EEY87740.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 897

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/925 (42%), Positives = 531/925 (57%), Gaps = 62/925 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 5   FMTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGAEKRDYVR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT  +  
Sbjct: 65  AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFLTSEQWL 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
            L + RLY TVY  D+EAF +W K  GL A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 125 ALPKDRLYATVYHTDDEAFDIWNKEIGLDAERIIRIGDNKGEKYASDNFWAMGDTGPCGP 184

Query: 172 CSEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 185 CSEIFYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHALPAPSVDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIV----NHRVIVDH 278
           ER++ VLQ   +NY+IDLF+HL++A+ ++ G+          E N  V    + +V+ DH
Sbjct: 245 ERISAVLQHVNSNYEIDLFQHLLKAAAEIIGVDTASLEAEAKEKNTPVHYPASLKVVADH 304

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            RS  FLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG+AYP
Sbjct: 305 ARSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGTAYP 364

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL   K  IE  L  E+E+F KTL++GL LL+G L+ L K  I+ G++ FKLYDT+G P+
Sbjct: 365 ELEANKARIEAALIKEEEQFAKTLEQGLKLLEGELTQL-KGSIIPGEIVFKLYDTYGFPV 423

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  DI   R L+ ID   F + +  QR RAR        G     + S+ +    T+F 
Sbjct: 424 DLTADIARERDLS-IDEAGFEKEMAAQRQRAREA------GKFAVDYNSIVKVEDETEFS 476

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GYD + G                          + AI + G +V+E   G +  +V +QT
Sbjct: 477 GYDAIEG-----------------------QGQIIAIYKDGTLVDEVTEGDEALIVLNQT 513

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE+GGQ+GDTG    +    ++ D +K     FVH  IV  G L+   ++  T+  +
Sbjct: 514 PFYAESGGQIGDTGIFKNETGIFEVQDTKKSGNA-FVHQGIVTMGNLKVTQNVEATVKAE 572

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R   + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P+T  +L+ IE  
Sbjct: 573 LRAATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERL 632

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGT 697
           VN  +  N  V T +++ E A   GA  L G KY   VRV+S+    +    S  LCGG 
Sbjct: 633 VNAEVIANTAVTTELLDIETAKTKGAMMLFGEKYGSEVRVLSMGSIIEEKNFSVELCGGI 692

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  TG+I L  I SES + AGIRRIEA+TG +A   +   D  +  + S LK  +   V
Sbjct: 693 HVKRTGDIGLFKITSESGVAAGIRRIEAVTGTKALELVQKADSDINQINSLLKAQKDQTV 752

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSV 812
            RV+   E    LQ    +   +L      +L      +A  + +   +  +D+K L+++
Sbjct: 753 ERVQTAVENVSALQKQIEQLNQKLANFQAAELLSQVQTVAGRSTLITTVQGMDAKSLRNL 812

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            D+ + K+   +I+L G+  + K S++  V +D      A D+ +  A  L GG GGG+P
Sbjct: 813 HDSTKSKLDHAVIVLAGVDGD-KVSLIASVAKDFTSSIKAGDIIKHLATEL-GGKGGGKP 870

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            +AQ G P   K +Q +A + ++L+
Sbjct: 871 DLAQGGAPLNEKFEQVMADLTAWLE 895


>gi|240127048|ref|ZP_04739709.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 881

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/911 (40%), Positives = 523/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 7   IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 67  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 127 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 187 CSEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 247 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 366 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 424 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 471 ------------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 513 VGYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V 
Sbjct: 573 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVN 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 633 AAIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 688 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 747

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I
Sbjct: 748 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|240122334|ref|ZP_04735290.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268680920|ref|ZP_06147782.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621204|gb|EEZ53604.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 874

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ I  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|317163606|gb|ADV07147.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 885

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/911 (40%), Positives = 523/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 11  IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 71  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 130

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 131 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 191 CSEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 250

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 251 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 310 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEA 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 370 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 427

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 428 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 474

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 475 ------------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGD 516

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 517 VGYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 576

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 577 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 636

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 637 AAIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 691

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 692 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 751

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I
Sbjct: 752 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVI 811

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 812 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 869

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 870 PEMLASAEGWL 880


>gi|254460942|ref|ZP_05074358.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206677531|gb|EDZ42018.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 887

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/896 (47%), Positives = 576/896 (64%), Gaps = 41/896 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F+K GH ++PSS L+P NDPTL+F NSGMV FKN+FTG E   Y  
Sbjct: 1   MASLNDIRSTFLNYFEKQGHAIVPSSPLVPRNDPTLLFANSGMVQFKNLFTGLESRDYAR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT EF++
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKAEAIAYAWELLTVEFNI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY  D+EA  +WKK++GLS D+IIRI T+DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKERLLVTVYHTDDEAADIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFEDGTMKPLEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T +  +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 KHDNYDTDLMRSLIEASADATSVDPDGPTKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+A+PEL QA+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVRQMGAAFPELGQAQALIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL LLD  L  L + ++ +GD AFKLYDT G PLD+ QD L  +G    D+  FN
Sbjct: 361 KTLERGLKLLDDELVGLPEGQVFSGDAAFKLYDTFGFPLDLTQDALREKGREA-DVDGFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E Q+++ARA   G G      IWF + + +GAT F+GYD                  
Sbjct: 420 QAMEAQKAKARAAWSGTGEAADSAIWFDIVDAHGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       +  +V  G   + A +GQ+V+++ +Q+PFYAE+GGQ+GD G    +  
Sbjct: 463 ------ETAEGQIATLVMDGAEADAAKAGQEVQIILNQSPFYAESGGQVGDKGIIKTETG 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++D  KK++G+ +H A V+ G +    + +L +D+  R  +  NHSATHLLH AL  
Sbjct: 517 TAVVSDT-KKSQGVIIHTATVQDGEIIKGSAAILEVDHGRRTAIRANHSATHLLHEALRA 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +HS  ++S +L  +E +VN  I QN PV TRIM  +DA
Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSAALSSEDLIKVEKDVNTYIRQNAPVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
            A GA AL G KY D VRVVS+  + G         +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTQAGSGKGSNGQTYSLELCGGTHVRQTGDIGAFVLLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RRIEA+TG+ A  H+  QD +L  +AS LK    +V  RV+ + EE + L  
Sbjct: 696 DSASSAGVRRIEALTGEAALDHMRAQDLRLAKVASDLKAQAADVPARVKALLEERKALSN 755

Query: 771 QLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           ++   +R+L ++             +  +NF++ +++ V  K+L +++D  +  I SG +
Sbjct: 756 EVAQLRRELAMSGGAGQGGGAEAEVVNGINFVAQVLTGVSGKDLPALIDEHKAAIGSGAV 815

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +L+  +  K A     VT+D +   +AVDL + +   LGG GGGGR  MAQ GG +
Sbjct: 816 LLIADAGGKAAV-AAGVTDDTVATVSAVDLVKAAVVELGGKGGGGRADMAQGGGKD 870


>gi|240016958|ref|ZP_04723498.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 874

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|121594335|ref|YP_986231.1| alanyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|205829967|sp|A1W7D0|SYA_ACISJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120606415|gb|ABM42155.1| alanyl-tRNA synthetase [Acidovorax sp. JS42]
          Length = 874

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/909 (41%), Positives = 528/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG     N   + +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSDLTN--PSLKVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP++ + +  I + LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERGV-NVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A QF GY+ L           
Sbjct: 422 EAGFATAMEHQKSTARAAGK-------FKMDRALEYTGAANQFTGYEQLA---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G       +GQ   VV D+TPFYAE+GGQ+GD G  
Sbjct: 465 -------------ESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D QK    ++ HH  +E G L    ++   +D Q R     NHS THL+H
Sbjct: 512 GAGSACFTVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+A+++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVRRTGDIGLFKVVAEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745

Query: 775 A--KRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D    +   +  +  ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A DL    A  + GG GGG+P MA +GG N     QA+
Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTNAAALPQAL 863

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 864 AAVQGWVGE 872


>gi|148653409|ref|YP_001280502.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|205830185|sp|A5WFW1|SYA_PSYWF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148572493|gb|ABQ94552.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 903

 Score =  936 bits (2419), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/913 (41%), Positives = 544/913 (59%), Gaps = 54/913 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  F++FF    H  +PSSSL+P NDPTL+FTN+GM  FK+ F G +K  Y    T
Sbjct: 20  TADVRKAFIDFFVSKQHTHVPSSSLVPYNDPTLLFTNAGMNQFKDCFLGIDKRDYTRAVT 79

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +   LD
Sbjct: 80  SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKSAIAYAWEFLTSKQWLGLD 139

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +LY+T+Y+ D+EAF +W +  GL+A++IIRI  N       DNFW+M +TGPCGPCSE
Sbjct: 140 ADKLYVTIYESDDEAFDIWHQDIGLAAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCSE 199

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D GE + GGLPG   E+G+RYIE+WN VFMQF +Q       LP  S+DTGMGLER+
Sbjct: 200 VFYDHGEHVEGGLPGTPEEDGDRYIEVWNCVFMQFNRQPDGTMEPLPAPSVDTGMGLERI 259

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + +LQ   +NY+IDLF +LI ++  + G+K   +N  + +V+ DH+R+ SFLIADG+LP+
Sbjct: 260 SAILQGVHSNYEIDLFVNLINSAADIIGIK--NDNQASLKVVADHIRAVSFLIADGVLPS 317

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG  +     ++  L  EMG AYP+L++ +  IE+ +  
Sbjct: 318 NEGRGYVLRRIIRRAVRHGNKLGAEDSFFYKMVAPLVKEMGDAYPQLVEKQAFIEKAIEK 377

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ +F KTL +GL LLD  L  L   ++L+G+ AFKLYDT+G P+D+  DI   RG+ GI
Sbjct: 378 EEVQFAKTLAQGLRLLDSELESLKSGDVLSGEAAFKLYDTYGFPVDLTADITRERGI-GI 436

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F++ +  QR RAR       +G  +  + +  +    T+F+GY+ L   +      
Sbjct: 437 DEAGFDEQMNIQRQRAR------DAGKFDVDYSAAIKVETPTEFVGYEQLDEKEVN---- 486

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             +  + Q G+ VE    G +  +V D+TPFYAE GGQ+G+ G 
Sbjct: 487 ------------------IIGLYQDGKEVEVLNEGDEGVIVLDRTPFYAEGGGQVGEMGE 528

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + D +K  +  F+HH +V  G L+   +    +    R   + NHSATHLL
Sbjct: 529 IRTSSGVFNVEDTKKSGQA-FIHHGVVNMGSLQKSQTADAQVVSAIRSASARNHSATHLL 587

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  VSQ GS ++ + LRFD ++   ++  +L +IE  VN+ I  N+     +
Sbjct: 588 HAALRKVLGDSVSQKGSLVSSEMLRFDFSYDNAVSQKDLATIERLVNEQIQANVETHIEL 647

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV---EYEDG--GVHSSALCGGTHVSSTGEIMLL 708
           MN +DA+A GAAAL G KY + VRV+++   E EDG     S  LCGG HV  TG+I L 
Sbjct: 648 MNIDDAMAKGAAALFGEKYGETVRVLTMGTTEIEDGIQKPFSIELCGGLHVKRTGDIGLF 707

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+TG  A  ++   D +L +LA+ LK  +  V  RV+ + ++ R
Sbjct: 708 KITSESGIAAGIRRIEALTGMGALRYIQQADSQLTALANQLKAKRPEVADRVQTMADKQR 767

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L+    +   ++          +   IAD   +   ++ +D K ++ ++D ++ K+Q  
Sbjct: 768 ELEKQIERLNQKIASAQAATLVDNVQTIADKKVLIAQVAGIDGKAMRGLIDDIKSKLQDT 827

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+LVG  K+ + ++   V++ L     A D+ R  A  L  G GGG+P  AQ G P+ +
Sbjct: 828 IIILVG-EKDGQLALAASVSKSLTGDIKAGDIIRHLADELE-GKGGGKPDYAQGGAPSSD 885

Query: 884 KADQAIAGVASFL 896
           K    +  + +++
Sbjct: 886 KLTGVMQALPNWV 898


>gi|297539363|ref|YP_003675132.1| alanyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258710|gb|ADI30555.1| alanyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 901

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/928 (39%), Positives = 533/928 (57%), Gaps = 72/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 9   PSSNEIRKAFLDFFASKGHQIVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRTYTRA 68

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L 
Sbjct: 69  TSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKDDAIAYAWELLTEVFKLP 128

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY +D+EA+ +W    G+ A++IIRI  N       DNFW M +TGPCGPC+E
Sbjct: 129 KDKLTVTVYADDDEAYNIWHDKIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTE 188

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+   GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 189 IFYDHGDHHFGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGMMHPLPKPSVDTGMGLERI 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN------------------NIVNHRVI 275
           + VLQ    NY+ID+FK LI A+ +   +                       N  + +V+
Sbjct: 249 SAVLQHVHANYEIDIFKTLIDAAAREVFVTPSNQTYSVASLSELKSKYPEILNNPSLKVL 308

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
            DH+R+ SFLIADG++P NEGRGYVLRRI+RRA+ +   LG        L+P L  +MG 
Sbjct: 309 ADHIRACSFLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGTRAAFFYKLVPDLVKQMGE 368

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDT 393
           AYPEL+  +  I + L+ E++RF +T++ G+ +L+  L+ + K  + + NGD+AFKL+DT
Sbjct: 369 AYPELVANQSRIMDMLKLEEDRFFETIENGMEILETELATMSKANNTLFNGDLAFKLHDT 428

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G PLD+  DI   R +  +D  +F+ A+  Q+ +ARA           K+  +L+    
Sbjct: 429 FGFPLDLTADICRERDV-NVDSAAFDAAMTRQKEQARAAGK-------FKMATNLEYNGA 480

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            T F GY+ L                         S+ + A+ + G  V +   G++  V
Sbjct: 481 NTDFKGYETLE-----------------------ASAKILALYKDGTAVNQLSEGEQGVV 517

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V D TPFYAE+GGQ+GD G    +     + D QK    +F HH I++ G +    SL  
Sbjct: 518 VLDNTPFYAESGGQVGDNGVLKAENGIFAVEDTQKIQAAVFGHHGILKTGKISVGESLKA 577

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           ++D   R  +  NHSATHL+H AL  +LG+HV Q GS +  D  RFD  H+ P+T  E+ 
Sbjct: 578 SVDIAARANIMRNHSATHLMHKALRQVLGTHVQQKGSLVDADKTRFDFLHNAPMTDEEIA 637

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E  VN  I  N P   R M+ E A  +GA  L G KY D VRV+ +        ++ L
Sbjct: 638 KVEAIVNAEILANAPTQAREMDIESAQKTGAMMLFGEKYGDIVRVLDIGS------TTEL 691

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV+ TG+I L  + +ES + AG+RRIEA TG  A   +  Q   +  L++ LK   
Sbjct: 692 CGGTHVNRTGDIGLFKVYAESGVAAGVRRIEAATGNGALKLINAQQALISQLSADLKAPT 751

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKE 808
             +  +V ++ +  + L+   A+ K +L             +IA V  ++  +   D+  
Sbjct: 752 SELASKVAQLSDHAKSLEKELARLKSKLASSQGDDLATQATEIAGVKVLAVTLEGADANT 811

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+  MD L+ K++S  I+L  +  + K S+   VT DL  +  A +L    A+ +GG GG
Sbjct: 812 LRETMDKLKDKLKSAAIVLASV-NDGKVSLAAGVTSDLTGKIKAGELVNFVAQQVGGKGG 870

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G+P MA +GG + ++  +A+AGV+ ++
Sbjct: 871 -GKPDMAMAGGTDASQLPKALAGVSDWV 897


>gi|222110972|ref|YP_002553236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|221730416|gb|ACM33236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 874

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/909 (41%), Positives = 528/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+   +     LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG     N   + +VI DH+R+++FL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSDLTN--PSLKVIADHIRATAFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP++ + +  I + LR E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERGV-NVD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A QF GY+ L           
Sbjct: 422 EAGFATAMEHQKSTARAAGK-------FKMDRALEYTGAANQFTGYEQLA---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G       +GQ   VV D+TPFYAE+GGQ+GD G  
Sbjct: 465 -------------ESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D QK    ++ HH  +E G L    ++   +D Q R     NHS THL+H
Sbjct: 512 GAGSACFSVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+A+++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVRRTGDIGLFKVVAEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745

Query: 775 A--KRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D    +   +  +  ++  +   D+K L+  MD L+ K+++  I+L  
Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A DL    A  + GG GGG+P MA +GG N     QA+
Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTNAAALPQAL 863

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 864 AAVQGWVGE 872


>gi|268594178|ref|ZP_06128345.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547567|gb|EEZ42985.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 881

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/911 (40%), Positives = 523/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 7   IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 67  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 127 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 187 CSEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 247 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 366 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 424 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 471 ------------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 513 VGYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 573 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 633 AAIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 688 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 747

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I
Sbjct: 748 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|197119994|ref|YP_002140421.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|197089354|gb|ACH40625.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 875

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 539/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKRDYLRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L 
Sbjct: 61  VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 GTGCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLTPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  EQV+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EP++  ++ A+   MG AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLFRIVDAVNMMMGDAYPELLEREHYVKKVILAEEER 360

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+   +      +++++G+V FKLYDT G P+D+  DI+ + G   +D 
Sbjct: 361 FIETLDRGLAILNEETAALKAKGEKVISGEVIFKLYDTFGFPVDLTADIVESEGFT-LDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G      I+  L      T F+GY               
Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYSE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AIV+ G +VEEA +G ++E+V   TPFY E+GGQ GDTG   
Sbjct: 467 ----------QTAFSTISAIVKGGTLVEEASAGDEIEIVTAATPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G +RT  +  L I   NR   + NH+ATHLL  
Sbjct: 517 TGSGHIEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVANRAATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TPD LRFD TH  P+T  E++ +E  VN  I  N  V +R M 
Sbjct: 577 ALREVLGDHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSTVESREMP 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             DA+A+GA AL G KY D V          G  SS LCGGTHV   GEI    I+SE+ 
Sbjct: 637 AADALAAGATALFGEKYGDVV-----RVVKVGDVSSELCGGTHVHGAGEIGFFKIISEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A + + G +++ + +A+ LK   G V+ +VE++    R+LQ    
Sbjct: 692 IAAGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELE 751

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            +   +  +S  +   D+K L+ + D L+++I SGII+L G 
Sbjct: 752 TLQARLNASKSADLIQQVREQNGIKILSVKVDG-DAKGLRELSDTLKQRIGSGIIVL-GT 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   +A++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+ 
Sbjct: 810 SDAARANLLVAVTADLSARWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALE 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 AVYQIV 874


>gi|296535675|ref|ZP_06897850.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263999|gb|EFH10449.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 881

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/896 (48%), Positives = 580/896 (64%), Gaps = 35/896 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFL++F ++GH ++ SS L+P NDPTLMFTNSGMV FKN+FTGQEK  Y  
Sbjct: 1   MTSSNDIRATFLDYFARHGHTVVESSPLVPRNDPTLMFTNSGMVQFKNVFTGQEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW LLT++F L
Sbjct: 61  ATTAQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWTLLTRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TV+ EDE+A  LW+KI+GL  +KIIRI T+DNFW M +TGPCGPCSEIF+D  
Sbjct: 121 PKEKLLVTVFSEDEDAAALWRKIAGLPDEKIIRIPTSDNFWRMGDTGPCGPCSEIFYDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQ+ ++    R  LP+ SIDTGMGLER A +LQ 
Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYLEEPAGTRNPLPRPSIDTGMGLERFAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDID F+ LI AS + TG + +G   ++HRV+ DHLRS +FLIADG++P+NEGRGY
Sbjct: 241 KHDNYDIDTFRALILASAEATGQEADGPFKISHRVVADHLRSGAFLIADGVMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRAM +A ++G  EPL+  LLPAL  +MG+AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRILRRAMRHAHMMGTKEPLLYRLLPALIRQMGAAYPELVRAEALISETLKLEENRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             L+RGL LL      LG    L GDVAFKLYDT+G PLD+ QD L   G   +D+  F 
Sbjct: 361 SLLERGLGLLAEESGKLGDKGTLPGDVAFKLYDTYGFPLDLTQDALRGEG-KAVDVAGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ RARA   G G   TE +WF LKEK GAT+F+GY                   
Sbjct: 420 AAMAEQKKRARAAWAGSGEAATETLWFDLKEKLGATEFLGYST----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                       + A+V  G +VE A  G +V VV +QTPFYAE+GGQ+GDTG   G DG
Sbjct: 463 ------EKAEGEILAVVANGAVVERAGPGTEVAVVLNQTPFYAESGGQVGDTGSITGADG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ + D QKK  G+FVH   VE G       +   + ++ R  +  +HSATHLLH AL 
Sbjct: 517 LRIAVRDTQKKL-GLFVHLGTVEAGEAAPGKPVQAEVAHERRSAIRAHHSATHLLHEALR 575

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG+HV+Q GS   PD LRFDV+   P+   +L  +E  VN  I +N  V+TR+M  E 
Sbjct: 576 RRLGTHVAQKGSLNAPDRLRFDVSQPTPMQPEDLAWVEAEVNARIRENAEVITRLMTPEA 635

Query: 659 AIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           A+ +GA AL G KY D VRVV + +     E  GV+S  LCGGTHV  TG+I L  IV+E
Sbjct: 636 AVQAGAMALFGEKYGDEVRVVGMGHDPEATEKHGVYSLELCGGTHVRRTGDIGLFKIVAE 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
            ++ AG+RR+EA+TG  A + +  + + L+  A+ LKV+   +  R+  + EE RKL+  
Sbjct: 696 GAVSAGVRRVEAVTGAAALALIEAEQKALREAAAALKVNPAELPARIASLVEERRKLERD 755

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +   ++KL     + S  ++  + F +  + EV  ++LK + +A+ K     ++ LV  +
Sbjct: 756 VAELRKKLATGGSEASVEEVGGLRFSARNLGEVPPRDLKGLAEAILKSGTVDVVALVSTA 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            E KAS++  V +    R +AV L R  +  +GG GGGGRP MAQ+GGP+ +KA+ 
Sbjct: 816 -EGKASLVAGVADSAKGRADAVALVRAGSAAVGGKGGGGRPDMAQAGGPDADKAED 870


>gi|161830958|ref|YP_001596677.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|205830041|sp|A9NCN7|SYA_COXBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161762825|gb|ABX78467.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 865

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 546/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+  V+Q  
Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLTAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +  +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTL--LKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLLEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   + + G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQ-IPGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D   R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVS-RFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|114767542|ref|ZP_01446296.1| alanyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540395|gb|EAU43481.1| alanyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 891

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/902 (47%), Positives = 568/902 (62%), Gaps = 45/902 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F+K GH+++PSS L+P NDPTLMFTNSGMV FKN+FTG E   Y+ 
Sbjct: 1   MPSLNDIRSTFLGYFEKQGHQVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK+ AI  AW+L+T+E D+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKKEAIPFAWELVTRELDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +T+Y  D+EA ++WKK +G+  D+IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PAERLLVTIYHTDDEAAEIWKK-TGVPDDRIIRIDTTDNFWMMGPTGPCGPCTEIFFDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           +   GG PGS E +G+R++EIWNLVFMQ EQ        L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DKYWGGPPGSPEEDGDRFVEIWNLVFMQNEQFEDGSMRALDMQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 TNDNYSTDLIRALIEASADATSSDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVRQMGQAYPELVRAQPLIEETLKLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L  LG+   L G  AFKLYDT+G PLD+ QD L  RG   +D   F+
Sbjct: 360 QTLDRGLKLLDDELVGLGEGAKLPGQAAFKLYDTYGFPLDLTQDALRERG-REVDTGGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IWF + +  GAT F+GYD                  
Sbjct: 419 EAMAEQKAKARAAWSGSGEAADLAIWFEIADANGATDFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIG 536
                       + A+V+ G  VE   +G+   VV +QTPFY E+GGQ+GD+G       
Sbjct: 462 ------ETAEGQMLALVKDGAEVEALEAGESGWVVMNQTPFYGESGGQVGDSGWMRRLED 515

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +    ++TD QK   G +F H   +++G      ++ L +D+  R ++  NHSATHLLH 
Sbjct: 516 EHDLAEVTDTQKMGGGKVFAHQVTIKQGRFAKGEAVALEVDHARRGKIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS   P+ LRFD +H+K +T  E+  +E  VN  I QN  V TRIM 
Sbjct: 576 ALRRALGDHVAQRGSLNAPERLRFDFSHAKALTPEEISRVEREVNAFIRQNSAVNTRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLL 708
            +DA A GA AL G KY D VRVVS+  E       DG  +S  LCGGTHV+ TG+I   
Sbjct: 636 PDDARALGAQALFGEKYGDEVRVVSMGTEAGSGKGGDGQTYSIELCGGTHVAQTGDIGTF 695

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SE++  AG+RRIEA+TG+ A + L G+D+ L  +   LK      V RV  + +E R
Sbjct: 696 ALTSETASAAGVRRIEALTGEAAMAELRGRDKALGEIEGLLKAHGAEAVSRVGALLDERR 755

Query: 769 KLQLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           KL+   A+ +  L               ++  V+F++ ++S V  K+L  ++D  + ++ 
Sbjct: 756 KLENEVAQLRRDLAMAGGAGQGGGAEAREVGGVSFVAQVLSGVSGKDLPPLIDEHKARLG 815

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           SG ++L+      K +V   VTEDL    +AVDL + + + LGG GGGGRP MAQ G  +
Sbjct: 816 SGAVLLIA-DTGGKVAVAAGVTEDLTGSHSAVDLVKAAVEALGGKGGGGRPDMAQGGAKD 874

Query: 882 GN 883
            +
Sbjct: 875 AS 876


>gi|153206762|ref|ZP_01945603.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165918516|ref|ZP_02218602.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212218396|ref|YP_002305183.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|120577125|gb|EAX33749.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|165917762|gb|EDR36366.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|212012658|gb|ACJ20038.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 865

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 547/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGP 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +G+RY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q  
Sbjct: 181 TISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +  +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTL--LKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   + + G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQ-IPGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D   R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVS-RFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  V+ + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVERETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|70731848|ref|YP_261590.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|83305855|sp|Q4K843|SYA_PSEF5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68346147|gb|AAY93753.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 874

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/894 (43%), Positives = 533/894 (59%), Gaps = 56/894 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ A+ +  G   +     + +V+ DH+RS  FLIADG+
Sbjct: 240 ERISAVLQHVHSNYEIDLFQSLLDAAAKAIGCTNDAQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLKILEQDLAEL-KGSVVPGDVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR RAR+ S      +    + SL +   AT+F GY    GS    
Sbjct: 417 T-LDEEGFEREMEAQRVRARSAS------SFGMDYNSLVKVDVATEFTGYHATSGS---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+ ++G+ V+    G++  VV DQTPFYAE+GGQ+GD
Sbjct: 466 -------------------AKVVALYKEGQSVDMLSEGEEGVVVLDQTPFYAESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R  + D  K   G F+HH ++ +G L     +   +D Q R   S+NHSAT
Sbjct: 507 CGYLQAGNARFDVRDTTK-TGGAFLHHGVLAKGSLTVGAPVETQVDAQVRHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N PV 
Sbjct: 566 HLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNTPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I
Sbjct: 626 TEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIGLLKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
            SE  + +G+RRIEA+TG  A ++L   +E+LK  A+ +K S+ N++ ++  + E  R  
Sbjct: 682 TSEGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLVKGSRDNLIDKLSAVLERNRLL 741

Query: 769 KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + QL   + K      D        +  V  ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSAQAADVKGVKVLAARLDGQDGKALLALVDQLKNKLGRAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +L G   E+K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG
Sbjct: 802 LL-GSVHEEKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGG 853


>gi|240079700|ref|ZP_04724243.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 874

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|212212531|ref|YP_002303467.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010941|gb|ACJ18322.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 865

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/903 (41%), Positives = 547/903 (60%), Gaps = 48/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + +R TFL +F++  HE++P SSLIP NDPTL+FTN+GMV FK++F G E   YQ  
Sbjct: 1   MNSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT    L 
Sbjct: 61  VSIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV+ +D E+  +W K   ++ ++  R    DNFW M +TGPCGPC+EIF+D G 
Sbjct: 121 PQRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGS 180

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PGS+E +GERY+EIWNLVFMQ+ +  K     L K S+DTGMGLER+A V+Q  
Sbjct: 181 TISGGPPGSAEADGERYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYDIDLF++L++A   +  +K E  +  + RVIVDH+RS +FLIADG++P+NEGRGYV
Sbjct: 241 HDNYDIDLFQYLLKALRTL--LKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  EP    L   L  EMG AYP L +++ LIE+T++ E+ +F  
Sbjct: 299 LRRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEMQFSN 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL +LD  ++ L   + + G++ F+LYDT+G P D+  DI   R    +D   F++
Sbjct: 359 TLTKGLKILDHEMAGLPSRQ-IPGNLIFQLYDTYGFPPDLTADIARERDF-VMDYAGFDK 416

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+E QR +++     + +      +       G TQF+GY+ L                 
Sbjct: 417 AMERQREQSQQAHQFVAN------YAQKASIGGETQFVGYETLNS--------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V +++Q  + +      +K  VV D+TPFYAE+GGQ+GD G    +   
Sbjct: 456 --------QANVISLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D +K+ + I++H   + +G L  +  +   +D   R  +  NHSATHLLH AL  +
Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDVS-RFDIMRNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +    LRFD +H+KP+T  EL+++E  VN  I  NL     +M  E+A 
Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G +Y   VRV+ +     G  S+ +CGGTH   TGEI L  IVSES   AGI
Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  ++   +++L+SL+  LK ++ N+  ++ +I E++RKL+   AK K +
Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  + L         + D+  ++  +  VD + L++++D L++K+    I+L  I +E +
Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT++ L+ FNA +L    A+ + GG  GGRP +AQ  G      + A+A V  +
Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV-GGRSGGRPDLAQGAGERPENLEAALAAVPKW 858

Query: 896 LKK 898
           ++K
Sbjct: 859 IEK 861


>gi|110679927|ref|YP_682934.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|123065511|sp|Q165U5|SYA_ROSDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109456043|gb|ABG32248.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 885

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/892 (48%), Positives = 569/892 (63%), Gaps = 41/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y+ 
Sbjct: 1   MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AWDL+T+E  +
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLVTRELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+T+Y  DEEA  +WKK+ G+  D+II I TNDNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSRLYVTIYHTDEEAAAIWKKV-GVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R++EIWNLVFMQ+EQ     R  L   SIDTGMG+ER+A +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLAAQSIDTGMGIERVAALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   +    +G    +HRVI DHLRS+SFL+ADG++P+N+GRGY
Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +PLM  L+PAL  +MG+AYPEL QA+ +I +TL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMIIQTLLQEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  LS LG+ + L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 360 QTLERGLKLLDDELSALGEGDDLPGAAAFKLYDTYGFPLDLTQDALREKG-RGVDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q+++ARA   G G      IWF + +  G T F+GYD                  
Sbjct: 419 AAMAAQKAKARAAWSGTGEAADAAIWFDVADAQGTTDFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+VQ G   + A +G+ V++  +QTPFYAE+GGQ+GDTG       
Sbjct: 462 ------EVAEGQIVALVQGGTATQTAKAGETVQIALNQTPFYAESGGQVGDTGVIKTANG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K A+ +FVH A V  G L    +  LT+D   R  +  NHSATHLLH AL  
Sbjct: 516 VANVTDCRKTAD-VFVHMAKVTEGALSVGEAAQLTVDPARRTAIRANHSATHLLHEALRE 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H++ ++  EL  +E +VN  I QN PV TRIM  + A
Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSHEELARVEADVNAYIRQNAPVETRIMTPDAA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  ++       G  +S  LCGGTHV  TG+I     + 
Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSGKGLSGDTYSLELCGGTHVRQTGDIGAFVTLG 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           +S+  AG+RRIEA+TG  A  HL  QD++L ++A+ LK    +V  RV  + EE R L  
Sbjct: 695 DSASSAGVRRIEALTGAAALQHLRAQDQRLAAVAADLKAQLADVPERVRSLLEERRALSN 754

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++   +R+L ++            +A   FM+ ++S V  K+L  ++D +++++ SG+++
Sbjct: 755 EVAQLRRELAMSGGGGSAAPDVKDVAGTPFMAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           L+    + KA+V   VT+DL  + +AVD+ + S   LGG GGGGRP MAQ G
Sbjct: 815 LIA-DADGKAAVAAGVTKDLTAKLSAVDIVKASVAALGGKGGGGRPDMAQGG 865


>gi|313668028|ref|YP_004048312.1| alanyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313005490|emb|CBN86926.1| alanyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 874

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/910 (40%), Positives = 525/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF++L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQNLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PANEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L  +   T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYEGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------EATVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  +GA  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQDQERLVKDIITETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+ ++  L  K +  I++
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALREIVTDLTGKSEQAIVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDVEKLP 859

Query: 887 QAIAGVASFL 896
             I  +  ++
Sbjct: 860 AMIDSMKDWV 869


>gi|240117118|ref|ZP_04731180.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268602805|ref|ZP_06136972.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268586936|gb|EEZ51612.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 874

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/910 (40%), Positives = 522/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + +E       A      +  + K    L      T+F GY   +       
Sbjct: 418 P-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT------ 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD 
Sbjct: 464 -----------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSATH
Sbjct: 507 GYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V  
Sbjct: 567 LMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNA 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I+
Sbjct: 627 AIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I+
Sbjct: 742 EKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K  
Sbjct: 802 LAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDTDKLP 859

Query: 887 QAIAGVASFL 896
           + +A    +L
Sbjct: 860 EMLASAEGWL 869


>gi|226940409|ref|YP_002795483.1| alanyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|226715336|gb|ACO74474.1| Sya [Laribacter hongkongensis HLHK9]
          Length = 877

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/922 (41%), Positives = 533/922 (57%), Gaps = 76/922 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF   GH+++PSSSL+P  DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRQKYLDFFASKGHQIVPSSSLVPWEDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTDPKWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L +TVY  D+EAF +W K  G+ A+KI+RI  N       DNFW M +TGPCGPC
Sbjct: 121 LPKEKLMVTVYASDDEAFDIWNKEIGVPAEKIVRIGDNKGAPYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGDHIWGGPPGSPDEDGDRFIEIWNNVFMQFNRTEDGVMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++LI+A+ + TG+ +  +   + +VI DH+R+ SFLIADG++
Sbjct: 241 RISAVLQGVHSNYEIDLFQNLIRAAARETGVPFSMDEP-SLKVIADHIRACSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N+GRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL   + LIE+ L
Sbjct: 300 PSNDGRGYVLRRIIRRAIRHGYKLGQKGLFFHRLVTDLVAEMGDAYPELRAKQALIEDEL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F +TLD+G+ LL+  L      ++L+G  AF+LYDT+G PLD+  DI   R L 
Sbjct: 360 KKEEIKFAETLDKGMALLEEALKD--GVQVLDGKTAFQLYDTYGFPLDLTADICRERDL- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+E QR+++RA S     G        L+     T+F GY           
Sbjct: 417 QVDQDGFDAAMEAQRAQSRAASTFKMGGK-------LEYAGDDTRFEGY----------- 458

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +     + A+ + G+ V+   +G    VV D+TPFYAE GGQ+GDT
Sbjct: 459 ------------AESTAEGRILALYKDGQPVDTLSAGDSGVVVLDRTPFYAEGGGQIGDT 506

Query: 532 GCAIGDGI---RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G     G       + D QK     F H   + RG L+T M++V TID   RR +  NHS
Sbjct: 507 GTLAATGGLDALFDVLDTQKVTAAAFGHEGRLVRGQLKTGMTVVATIDLHRRRAIQRNHS 566

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THL+H AL  +LG HV+Q GS +T +  RFD +H +P+++ ++  IE  VN +I  N  
Sbjct: 567 VTHLMHAALRDVLGKHVTQKGSLVTAERTRFDFSHHEPVSAEQMAEIERIVNFVIGANYD 626

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  R+M+ +DA   GA AL G KY D VRV+ +     G  S+ LCGGTHVS TG+I   
Sbjct: 627 VSARLMSMDDAQKLGAMALFGEKYGDVVRVLKM-----GDFSTELCGGTHVSRTGDIGFF 681

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767
            IVSE  + AG+RRIEA+TG+ A +++  QD+ ++     LK  S   V  R+  + ++ 
Sbjct: 682 KIVSEGGVAAGVRRIEAVTGEGAVAYVQSQDKLVRDACHMLKAQSHEEVAERIAALQDQL 741

Query: 768 RKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L    A+ K +L          S   +     ++  +   D+  L+  MD L+ ++QS
Sbjct: 742 KGLDKEVARLKGKLAASAGEELAASAVTVNGARLLAAELEGADAATLRDTMDKLKDRLQS 801

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHM 874
            +I+L     + K  +   VT+DL  +  A +L    A         G+        P +
Sbjct: 802 AVIVLAS-KADGKVQLAAGVTKDLTGKVKAGELVNFVA---------GQVGGKGGGKPDI 851

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           A +GG    K  +A+A V  ++
Sbjct: 852 AMAGGSEPEKLAEALASVQGWV 873


>gi|294669536|ref|ZP_06734603.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308449|gb|EFE49692.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 873

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 528/911 (57%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  I E L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALT--KGSNKLDGEIIFKLYDTYGFPYDLTADICRERNI- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +E       A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREME-------AQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E VEE  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQDTKIIALYKGSEAVEELQAGEVGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +    R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H++ I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHTQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S  LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   AK K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAVKLP 859

Query: 887 QAIAGVASFLK 897
           + +  V  ++K
Sbjct: 860 EMLGSVEDWVK 870


>gi|253702326|ref|YP_003023515.1| alanyl-tRNA synthetase [Geobacter sp. M21]
 gi|251777176|gb|ACT19757.1| alanyl-tRNA synthetase [Geobacter sp. M21]
          Length = 875

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/906 (43%), Positives = 543/906 (59%), Gaps = 43/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F  FFQK GH L+ SS+LIP NDPTL+FTN+GM  FK++F G EK  Y   
Sbjct: 1   MTGKEIRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKREYLRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L 
Sbjct: 61  VSSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +D+EA  +W    G+  ++I R    DNFWSM +TGPCGPC+EIF+D G 
Sbjct: 121 KDRLYVTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGP 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+EIWN VFMQF +        LPK S+DTGMGLER++ V+Q 
Sbjct: 181 GTGCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLAPLPKPSVDTGMGLERISAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DL + +I+  E+V+G KY  +  + V+ RVI DH R+ +FLI DG+LP+NEGR
Sbjct: 241 VTSNYDTDLLQGIIRHIEKVSGKKYRDDERDDVSMRVIADHARAVTFLICDGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA  +A++LG  EP++  ++ A+   M  AYPEL++ +  +++ + +E+ER
Sbjct: 301 GYVLRRIMRRAARHAKMLGIAEPVLFRVVDAVNMMMSDAYPELLEREQYVKKVILAEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRGL +L+   + L    +++++G++ FKLYDT G P+D+  DI+ + G   +D 
Sbjct: 361 FIETLDRGLAILNEETAALRAKGEKVISGEIIFKLYDTFGFPVDLTADIVESEGFT-LDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR +AR +  G G      I+  L      T F+GY               
Sbjct: 420 DGFALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYSE------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AIV+ G +VEEA +G++VE+V   TPFY E+GGQ GDTG   
Sbjct: 467 ----------QTAFSTISAIVKGGTLVEEAGAGEEVEIVTAATPFYGESGGQAGDTGTIS 516

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +++T   +    + VH   V  G +RT  +  L I   +R   + NH+ATHLL  
Sbjct: 517 TGSGHVEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVAHRAATARNHTATHLLQA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +TPD LRFD TH  P+T  E++ +E  VN  I  N PV  R M 
Sbjct: 577 ALREVLGEHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSPVEAREMP 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             DA+A+GA AL G KY D VRVV       G  SS LCGGTHV   GEI    I+SE+ 
Sbjct: 637 ATDALAAGATALFGEKYGDVVRVVK-----VGEVSSELCGGTHVHGAGEIGFFKIISEAG 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA TG  A + + G +++ + +A+ LK   G V+ +VE++    R+LQ    
Sbjct: 692 IAAGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELE 751

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +LN            +   V  +S  +   D+K L+ + D L+++I SGII+L G 
Sbjct: 752 TLQARLNASKSADLIQQVREQNGVKILSVKVEG-DAKGLRELSDTLKQRIGSGIIVL-GT 809

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           S   +A++L+ VT DL  R+ A D+ +  A ++ GG GGG+P +AQ+GG       +A+ 
Sbjct: 810 SDAARANLLVAVTADLAGRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALE 868

Query: 891 GVASFL 896
            V   +
Sbjct: 869 AVYQIV 874


>gi|238753177|ref|ZP_04614619.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238708604|gb|EEQ00880.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 846

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/884 (43%), Positives = 537/884 (60%), Gaps = 55/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTSGQWFNLPKEKLWVTVYETDDEAYEIWANEIG 120

Query: 146 LSADKIIRITTN------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYI 198
           +  ++IIRI         DNFW M +TGPCGPCSEIF+D G+ I GG PGS E +G+RYI
Sbjct: 121 IPHERIIRIGDKGAPFASDNFWQMGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRYI 180

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           EIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ    NY+IDLF+ LI A  +
Sbjct: 181 EIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNTNYEIDLFRDLIAAVAE 240

Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           VTG      N  + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG  
Sbjct: 241 VTGATDL--NSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNILGAK 298

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           E     L+  L   MGSA  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L  
Sbjct: 299 ETFFYKLVGPLIAVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLTG 358

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
           D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G+
Sbjct: 359 D-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFGA 415

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
                 + SL     A+QF GYD                            + V A+ + 
Sbjct: 416 D-----YNSLIRVDSASQFSGYD-----------------------HVHQQATVTALFRN 447

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           GE V+E   G++  VV +QTPFY E+GGQ+GD G          ++D QK  + I  H  
Sbjct: 448 GEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVSDTQKYGQAI-GHLG 506

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +  G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    LR
Sbjct: 507 QLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYLR 566

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H + +   +++ +ED VN+ I +N+PV T +M  E A   GA AL G KY+D+VRV
Sbjct: 567 FDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELEAAKEKGAMALFGEKYDDQVRV 626

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +++     G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  Q
Sbjct: 627 LTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQ 681

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIAD 793
            + L  +A  +K     +  +V  + +  + L+    + K Q   ++      +   +  
Sbjct: 682 SDLLADVAHLVKGDTHTLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKLVNG 741

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V  +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A 
Sbjct: 742 VKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTSKVKAG 800

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +L    A+ + GG GGGRP MAQ+GG + +    A+A V ++++
Sbjct: 801 ELIADIAQQV-GGKGGGRPDMAQAGGTDVHALPSALASVEAWVE 843


>gi|268595847|ref|ZP_06130014.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268549635|gb|EEZ44654.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 881

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/911 (40%), Positives = 523/911 (57%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 7   IMKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 67  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGP
Sbjct: 127 NIPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G+ I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 187 CSEIFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 247 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEEP-SLKVIADHIRSCSFLIADGV 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG ++P    L+  L  EMG AYPEL + +  IEE 
Sbjct: 306 LPSNEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEA 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ RF +TL+ G+ LL+  L+  GK   L G++ FKLYDT+G P D+  DI   R +
Sbjct: 366 LKNEESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI 423

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
              D   F + +E       A      +  + K    L      T+F GY   +      
Sbjct: 424 EP-DEAGFEREME-------AQRARARAAQSFKANAQLPYDGQDTEFKGYSERQT----- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+ + G  V E   G    VV D TPFYAE+GGQ+GD
Sbjct: 471 ------------------ESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R ++ D QK    +F    +   G L+   S+   +D + R     NHSAT
Sbjct: 513 VGYIFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +T +  RFD++H + +T+ E+  +E  VN+ +  N+ V 
Sbjct: 573 HLMHKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVN 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM+ EDA  + A  L G KY D VRV+ +     G  S+ LCGGTHVS TG+I L  I
Sbjct: 633 AAIMSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKI 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRK 769
           +SE  I AG+RRIEAITG  A      Q+  +K + +  K   + +V+ +++      + 
Sbjct: 688 ISEGGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKA 747

Query: 770 LQLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   A+ K +L      + L   K      +     E D+  L+  +  L  K  + +I
Sbjct: 748 LEKELARAKAELAVHAGAKLLDDAKDLGAAKLVAAQIEADAAALRETVTDLTGKSDNAVI 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  E K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG + +K 
Sbjct: 808 LLAAV-NEGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKL 865

Query: 886 DQAIAGVASFL 896
            + +A    +L
Sbjct: 866 PEMLASAEGWL 876


>gi|326342881|gb|EGD66649.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 840

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/876 (44%), Positives = 545/876 (62%), Gaps = 56/876 (6%)

Query: 36  LMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95
           ++FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGN
Sbjct: 1   MLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN 60

Query: 96  FSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIR 153
           FSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIR
Sbjct: 61  FSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIR 120

Query: 154 ITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVF 205
           I  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIWN+VF
Sbjct: 121 IGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVF 180

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
           MQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG    
Sbjct: 181 MQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL 240

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
            N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L
Sbjct: 241 SNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL 298

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           +  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+
Sbjct: 299 VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGE 357

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I 
Sbjct: 358 TAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIR 415

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
                   A++F GYD L                        ++  V A+   G+ V+  
Sbjct: 416 VD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAI 447

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L
Sbjct: 448 NAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSL 506

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++
Sbjct: 507 KVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNE 566

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+    
Sbjct: 567 AMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM---- 622

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +
Sbjct: 623 -GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEV 681

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE 803
           A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE
Sbjct: 682 AHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSE 741

Query: 804 ---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A
Sbjct: 742 LSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVA 800

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 801 QQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 835


>gi|300113492|ref|YP_003760067.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299539429|gb|ADJ27746.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 874

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 551/903 (61%), Gaps = 43/903 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +RT FL++F++ GHE++PSS L+P NDPTL+FTN+GMV FK +F G+E   Y  
Sbjct: 1   MKSSAELRTIFLDYFRRQGHEIVPSSPLVPANDPTLLFTNAGMVQFKEVFLGREARTYDR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+   L
Sbjct: 61  AASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV+ ED+EA  +W +  G+S ++  R    DNFWSM ETGPCGPCSEIF+D G
Sbjct: 121 PPERLWVTVFKEDDEAANIWLRGIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGSSE EG+RY EIWNLVFMQ+++  +     LP+ S+DTGMGLER+A V+Q 
Sbjct: 181 PEIAGGPPGSSEQEGDRYTEIWNLVFMQYDRDKEGRLSPLPRPSVDTGMGLERLAAVMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+HLI A   + G+  +     + RVI DH+RS +FLI DG+ PANEGRGY
Sbjct: 241 VHNNYDIDLFRHLIAAITALPGV--QNQEQTSLRVIADHIRSCAFLIVDGVQPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +  +LG  +P   HL   L  EMG AYPEL++ +  +E  L+ E+ERF 
Sbjct: 299 VLRRIIRRAIRHGHVLGLRDPFFYHLAQPLVQEMGEAYPELVRLQSQVERVLKLEEERFN 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL +L+  + HL  D ++ G+  F+LYDT G P+D+  DI   R L+ +D+  F 
Sbjct: 359 ETLEQGLKILEQDIIHLS-DGVIPGETIFRLYDTFGFPVDLTADIARERKLS-LDMKGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+  QR RARA S      + E++  +L      T+FIGY+ L                
Sbjct: 417 QAMARQRERARAASRFSEEYSAEELQINL-----ETEFIGYEQL---------------- 455

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                  G    +  + +  E VE+  +G+   VV DQTPFYAEAGGQ+GD G   G   
Sbjct: 456 ----CAKGQVVALFCLAETMEAVEQLNAGESGMVVLDQTPFYAEAGGQVGDRGTLHGSSG 511

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K+     VH   V  G LR   S+   ++ Q R    +NHSATHLLH AL  
Sbjct: 512 LFNVTDTRKQ-GAAHVHLGEVRLGQLRIGDSIQSEVNRQYRTPTRLNHSATHLLHAALRE 570

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V+Q GS +  D LRFD +H + + S +L+ IE  +N  I  NLPV T++M  + A
Sbjct: 571 VLGESVAQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLINAKIRANLPVETQLMPLQQA 630

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +G  AL G KY ++VRV+ +     G  S  LCGGTHV  TG+I L  I++E  + AG
Sbjct: 631 LDAGVVALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGVAAG 685

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHA 775
           IRRIEA+TG+ A S +   +  L++L   LK S+ + V +     ++  ++ ++LQ + A
Sbjct: 686 IRRIEAVTGEAALSWVEESEVCLEALMGRLKASRDSAVDKLEQLQQQNRQQEKELQRLKA 745

Query: 776 KRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K       +      ++  +  ++  I  VDSK L++ +D L+ K+    ++L G   E 
Sbjct: 746 KLATAGGADLSAQAQEVRGIKVLAARIDGVDSKTLRATVDQLKGKLTIAAVVL-GTVAEG 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++  VT++  DR  A DL    A+ + GG GGGRP MAQ+GG + +  D A+  V  
Sbjct: 805 KVVLIAGVTKNATDRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRHPDNLDAALGLVPK 863

Query: 895 FLK 897
           +++
Sbjct: 864 WVE 866


>gi|325496257|gb|EGC94116.1| alanyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 839

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/875 (44%), Positives = 544/875 (62%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 NK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I  
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803
             LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE 
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834


>gi|258545023|ref|ZP_05705257.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258519721|gb|EEV88580.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 876

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/893 (41%), Positives = 526/893 (58%), Gaps = 55/893 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL++F ++GH+++ SSSL+P NDPTL+FTN+GMV FK+IFTG E   Y+  T
Sbjct: 8   STAEIRRAFLDYFAEHGHKIVHSSSLVPGNDPTLLFTNAGMVQFKDIFTGSESRDYKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L  
Sbjct: 68  TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTQVFGLPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCSE 174
            +L +TVY ED+EAF +W+   GL  DKIIRI           DNFW+M +TGPCGPCSE
Sbjct: 128 EKLCVTVYHEDDEAFAIWRDKVGLPEDKIIRIGDKPGKAKYESDNFWAMGDTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+R+IEIWN+VFMQFE+        LP+ SIDTGMGLER+
Sbjct: 188 IFYDHGPDVWGGPPGSPEEDGDRFIEIWNIVFMQFERDASGTMKPLPRPSIDTGMGLERI 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+ID+F++LI A+ + TG         + +VI DH+R++ FL+ DG+LP 
Sbjct: 248 AAVLQGVHSNYEIDIFRNLIAAAAEATGCDDLAQ--TSLKVIADHIRATVFLMVDGVLPG 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRIMRRA+ +   LG  +P    L+  L  EMG AYPE+++A+  I + +R 
Sbjct: 306 NEGRGYVLRRIMRRAIRHGYKLGQNQPFFYKLVAPLVAEMGEAYPEIVEAEARITDAVRR 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL+ GL +L+  L  +   E + G+  FKLYDT+G P+D+  DI   RGL  +
Sbjct: 366 EEERFAQTLEAGLEVLEKALGEMRGTE-IPGETVFKLYDTYGFPVDLTADIARERGLT-L 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  ++ A+ EQR RA+A      +           +  G T F GY+   GS       
Sbjct: 424 DMDGYDAAMAEQRERAKAAGKFDAAQK--------LDISGKTAFDGYEKESGS------- 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + +  I   G+ V +  +G +  VV D+TPFY E+GGQ+GD+G 
Sbjct: 469 ----------------AQIMQIFADGKAVTKLDAGARGVVVLDRTPFYGESGGQVGDSGT 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D QK+ +  F+H   VE+G +    +    ID + R  +  +HSATHLL
Sbjct: 513 LRTTSGVFRVEDTQKQGDA-FLHIGHVEQGDISVGETAQAEIDRERRAAIKRHHSATHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL + LG+HV Q GS +     RFD +H K +++A++  +E  +N  I  N PVV   
Sbjct: 572 HKALRSTLGTHVQQKGSLVDERRTRFDFSHDKALSAADIAQVEAMMNAQILGNAPVVIEQ 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+R+ A   GA AL G KY D VRVVS+        S  LCGGTHV   GEI L  +VS+
Sbjct: 632 MSRDAAQKKGAMALFGEKYGDVVRVVSMG---DDGFSIELCGGTHVGRLGEIGLAKVVSQ 688

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            ++ AG+RRIE + G  A  HL   D  L   A+ LK    ++  R+  + ++ + L+  
Sbjct: 689 GAVSAGVRRIEVVCGLAALEHLTHSDALLTESAALLKTDGEHLPERISALQQQLKTLEKE 748

Query: 774 HAKRKLQLNV-EDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVG 829
               K QL    D    +I  +N    +      +D+  L+   D L+ ++ + +++ +G
Sbjct: 749 VQTLKRQLAQGGDGGGAEIQVINGWKTLALQRDGIDNATLRDTADQLRDRLGADVVV-IG 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
              +  A +++ V +   +  +A ++ R  A  + GG GGGRP  AQ+GG N 
Sbjct: 808 SVDDDTARLIVSVGK-TANGLHAGNIIRELAVHI-GGKGGGRPDFAQAGGKNP 858


>gi|301026644|ref|ZP_07190061.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|299879631|gb|EFI87842.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1]
          Length = 839

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/875 (44%), Positives = 543/875 (62%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 NK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I  
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803
             LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE 
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834


>gi|90420928|ref|ZP_01228833.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334903|gb|EAS48675.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 890

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/894 (52%), Positives = 607/894 (67%), Gaps = 39/894 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F KN HE + SS L+P NDPTLMFTN+GMV FKN+FTG E   YQ 
Sbjct: 1   MSGVNEIRSAFLDYFAKNDHERVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVETRPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL +TVY EDEEA  LW+KI+GLS D+IIRI+T+DNFW+M ETGPCGPCSEIFFD  
Sbjct: 121 PADRLLVTVYSEDEEAAALWRKIAGLSDDRIIRISTSDNFWAMGETGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      E+G+R+IEIWNLVFMQFEQ +   R  LP+ SIDTGMGLER+A +LQ 
Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQFEQLSADNRVELPRPSIDTGMGLERIAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLFK LI + E   G + EG+++ +HRVI DHLRS++FLIADG+LP+NEGRGY
Sbjct: 241 VHDNYDIDLFKALIASVEATIGSRAEGDSVASHRVIADHLRSTAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A++LG  EP++  +LP L  EMG AYPEL++A+ LI ETL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAKMLGAREPVLYKMLPTLVAEMGRAYPELVRAEALISETLKLEERRFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LL      +     L+G+ AFKLYDT+G PLD+ QD L  RG+  +D+ +FN
Sbjct: 361 QTLDRGLSLLTDATEGMDAGAKLSGETAFKLYDTYGFPLDLTQDALRQRGIE-VDLDAFN 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E Q++ AR    G G   +E +WF ++E+ GAT+F+GYD  R               
Sbjct: 420 TAMERQKAEARKSWTGSGEAASETVWFPIRERVGATEFLGYDTER--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V A+V+ G  V  A +G +V +V +QTPFY E+GGQLGDTG   GDG+
Sbjct: 465 --------AEGSVMAVVRNGTEVPAAGAGDEVAIVLNQTPFYGESGGQLGDTGIMRGDGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I D QK AEG+FVH   V+ G ++  M L L +D+  R ++  NHSATHLLH  L  
Sbjct: 517 EIVIADTQKFAEGLFVHRGKVKSGTVKAGMPLDLIVDHGRRTKIRANHSATHLLHEGLRE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSHV+Q GS + P+ LRFD +H KPI   EL  +E   N I+ QN PV TR+M  +DA
Sbjct: 577 ILGSHVAQKGSMVAPERLRFDFSHPKPIEPGELAEVERLANGIVLQNAPVETRLMAVDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714
           IASGA AL G KY D VRVVS+   + G       S  LCGGTHV++TG+I L++I+ ES
Sbjct: 637 IASGAMALFGEKYGDEVRVVSMGTGEEGEKAGKTFSIELCGGTHVNATGDIGLVHILGES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQL 772
           ++ AG+RR+EA+TGQ AR HL+ QD +++ +AS LKVS  +   R+E +       + +L
Sbjct: 697 AVGAGVRRVEALTGQAARDHLLAQDARVRQMASILKVSPADAPARLEAVVEERRRLEREL 756

Query: 773 IHAKRKLQLNVEDLSCHK------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+++L L  +  S         +A V F+  +++ V  K+LK ++D  + ++ SG++ 
Sbjct: 757 AEARKRLALAGDGASGEGGSASKVVAGVGFLGRVLNGVAGKDLKGLVDEAKTQLGSGVVA 816

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            V +    KASV++ VT DL DRF+AV L R ++  +GG GGGGRP MAQ+GGP
Sbjct: 817 FVSVDA-GKASVVVGVTADLTDRFDAVALVRDASVAIGGKGGGGRPDMAQAGGP 869


>gi|83647875|ref|YP_436310.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123531367|sp|Q2SBT9|SYA_HAHCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83635918|gb|ABC31885.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 876

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 534/912 (58%), Gaps = 55/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR+ FL++FQ+NGHE++ SSSL+P +DPTL+FTN+GM  FK++F G++K  Y  
Sbjct: 1   MKS-SEIRSAFLKYFQRNGHEVVASSSLVPADDPTLLFTNAGMNQFKDVFLGKDKRNYDR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT     
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWEFLTSSDWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++D+ +L +TVY  D+E+F +W    G+  ++IIRI  N       DNFW M +TGPCGP
Sbjct: 120 NIDKSKLTVTVYASDDESFDIWANEIGVPEERIIRIGDNKGAPYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+R+IEIWN+VFMQF +    E   LPK S+DTGMGL
Sbjct: 180 CTEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNVVFMQFNRTADGEMHPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ ++Q   +NY+IDLF+ L+  + +V G           RVI DH+RSSSFLIADG+
Sbjct: 240 ERISALMQGVHSNYEIDLFQELLAEASKVLGGA--SIEEPALRVIADHIRSSSFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N GRG VLRRI+RRA  Y   +G TEP +  L+  L   MG AYPEL  ++  IE+T
Sbjct: 298 LPENIGRGSVLRRIIRRAARYGNKVGATEPFLHKLVGKLVELMGDAYPELKASQNKIEKT 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTLD+GL LL+  L  L K   + G   F LYDT+G P+++  DI   R L
Sbjct: 358 LLLEEEQFAKTLDKGLKLLEHELEQL-KGMTIPGKTIFTLYDTYGFPVELTNDIARERSL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A  D+  +   +E QR RAR        G+    + +      +++F GY  L GS    
Sbjct: 417 AM-DMDGYEVEMEAQRKRAREA------GSFGVDYNAGLNIDVSSEFTGYTELAGSYKA- 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                  A+    +  +    GQ+  VV D+TPFYAE+GGQ+GD
Sbjct: 469 ----------------------LALFAGSDKADALTVGQQGLVVLDKTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D     + D +K+   I VH   V  G ++   ++   +D   R+  ++NHSAT
Sbjct: 507 TGVLKTDTGVFVVKDTKKEGAAI-VHIGAVSEGEIKVGQTVTAEVDRHKRKATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS + P+ LRFD  H +P+T  +++ +E  VN  I  N  V 
Sbjct: 566 HLLHAALRKVLGDHVAQKGSLVDPERLRFDFAHFEPMTQEQIRQVESIVNAQIRANTSVS 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  + A   GA AL G KY D VRV+++   D    S  LCGGTHV  TG+I +  I
Sbjct: 626 TEVMGMDAARERGAMALFGEKYGDTVRVLAMGESD---FSIELCGGTHVERTGDIGMFVI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE+   AG+RRIEA+TGQ A + +   D  L+ +A  +K ++     +V  + E  R+L
Sbjct: 683 ASEAGTAAGVRRIEALTGQPAENWVQSSDALLRDIAVLVKGNRETAADKVRALIERSRQL 742

Query: 771 QLI--HAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGII 825
           +      K KL  +          DV  +  +   +  VD K L   +D L+ K+   ++
Sbjct: 743 EKEVDQVKAKLASSAGSDLAASAVDVKGLKVLAAKLDGVDRKALMDTVDQLKNKLGQAVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  + ++ KAS++  VT+    +  A DL ++ A+ L GG GGGRP MAQ GG    K 
Sbjct: 803 LLASV-EDGKASIVAGVTKAESAKVKAGDLVKMVAEQL-GGKGGGRPDMAQGGGVELGKL 860

Query: 886 DQAIAGVASFLK 897
           D A+A V ++++
Sbjct: 861 DAALASVNAWVE 872


>gi|320180884|gb|EFW55807.1| Alanyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320189025|gb|EFW63684.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
          Length = 839

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/875 (44%), Positives = 544/875 (62%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI
Sbjct: 61  SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIWN+VFM
Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     
Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 NK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ 
Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I  
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                  A++F GYD L                        ++  V A+   G+ V+   
Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+
Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSLK 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ 
Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     
Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A
Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803
             LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE 
Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741

Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+
Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 834


>gi|317050904|ref|YP_004112020.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316945988|gb|ADU65464.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 893

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/909 (41%), Positives = 536/909 (58%), Gaps = 45/909 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   +R  FL +F+  GH+++ SS LIP +DPTL+FTN+GM  FKNIF G EK  Y   
Sbjct: 11  MNAQQVRQQFLSYFESKGHKVVASSGLIPFDDPTLLFTNAGMNQFKNIFLGNEKRDYNRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ +T+   LD
Sbjct: 71  ATAQKCVRAGGKHNDLENVGVTARHHTFFEMLGNFSFGDYFKREAIEYAWEFITEVMKLD 130

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+++V+ ED+EA  +W+   G+ A++I+R    DNFW M ETGPCGPCSEI +DQG 
Sbjct: 131 RSRLWVSVFREDDEALAIWRDHIGVPAERILRCGEKDNFWQMGETGPCGPCSEIHYDQGP 190

Query: 182 CIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            +P   GG  G   E +RY+EIWNLVFMQ+++Q       LPK SIDTGMGLER+A V+Q
Sbjct: 191 DVPCTEGGPCGVECECDRYLEIWNLVFMQYDRQPDGTLVPLPKPSIDTGMGLERLAAVVQ 250

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
            +T+NY  DLF  L+       GM Y     +  V+ RVI DHLR+S+FLI+DG +P+NE
Sbjct: 251 GETSNYHTDLFLPLLNRIAADCGMTYTRSASHQDVSMRVIADHLRASTFLISDGAIPSNE 310

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRIMRRAM +A  LG  EP M  L+  +    G A+PE+++ + ++EE +  E+
Sbjct: 311 GRGYVLRRIMRRAMRHANQLGKKEPYMYSLVCLMEEHYGEAFPEIVKNRAMVEEIIYQEE 370

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
            RF  TLD GL +L+ +++ L K     L+G  AFKLYDT+G PLD+  DIL  RG+  +
Sbjct: 371 RRFANTLDHGLAILEEMVAGLQKSAQVALDGQSAFKLYDTYGFPLDLTVDILEDRGIT-V 429

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+EEQ+ RARA    + S  T      L E     +F GYD L          
Sbjct: 430 DEAGFYAAMEEQKVRARASWKAVAS-VTSSEDLRLIESRHQQEFSGYDFLSAK------- 481

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                          +S++  +  Q   + +  +G++  ++ D+TPFYAE+GGQ+ DTG 
Sbjct: 482 ---------------ASVIGLLDLQENSLSQVRAGEEAWLLLDKTPFYAESGGQVADTGV 526

Query: 534 AIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              DG    ++  V+K   G+ +H  +V +G      ++  T++ + RR +++NHSATHL
Sbjct: 527 VATDGGDIFEVRSVRKSIGGLHLHRGVVSQGRFSAGDAVTATVNSRRRRNITLNHSATHL 586

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL + +G HV Q GS +    LRFD TH K +T  EL+ +ED VN  +  N  V   
Sbjct: 587 LHAALKSTVGEHVRQAGSLVEDGKLRFDFTHWKGLTPEELQGVEDQVNAQVMANHAVRKE 646

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  +DA+A GA AL   KY D VRV+++     G +S  LCGGTHV +TG+I L  I+S
Sbjct: 647 LMTLDDAVARGATALFDEKYGDDVRVITM-----GDYSMELCGGTHVDATGQIGLFKILS 701

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES+I AG+RRIEA TG  A   +    + +   A  LK     +  ++E++ E  R+L+ 
Sbjct: 702 ESAIAAGVRRIEATTGPGALQVVRDLQKTVGDAARMLKTRPEELCAKIEKLLEGNRQLEK 761

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + +++  +         +++ V  +         +ELK ++D+ + ++   ++ L
Sbjct: 762 QQRELQEKMSARETSTLQEQVEEVSGVKVLLQSFEGKSVEELKQIVDSAKHQLGEVVVAL 821

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  + K   ++ V+E L  R  A DL ++ A   GGGGG G+P  AQ+GG    K  +
Sbjct: 822 ASVV-DGKVLFVVGVSEALSQRVRAGDLVKILATTCGGGGG-GKPTFAQAGGREPGKIAE 879

Query: 888 AIAGVASFL 896
           A+      L
Sbjct: 880 ALQKAREHL 888


>gi|260222905|emb|CBA32940.1| Alanyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 878

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/917 (40%), Positives = 527/917 (57%), Gaps = 65/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +V+ IR +FL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 1   MSVADIRKSFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRNYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++  AW+LLT  + L 
Sbjct: 61  ASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKIS---GLSAD------KIIRITTN-------DNFWSMAE 165
             +LY TVY ED+EA+ +W+ I    G + +      +IIRI  N       DNFW MA+
Sbjct: 121 AEKLYATVYQEDDEAYAIWEDIFVKAGWTPERVKQEGRIIRIGDNKGGRYKSDNFWMMAD 180

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           TGPCGPCSEIF+D G  IPGG PGS  E+G+R+IEIWN VFMQF          LP   +
Sbjct: 181 TGPCGPCSEIFYDHGAHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMDETGAVTPLPAPCV 240

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
           DTGMGLER+A +LQ   +NY+IDLF  LI+A+ + TG     N   + RVI DH+R+++F
Sbjct: 241 DTGMGLERLAAILQHVHSNYEIDLFDALIKAASRETGCSDLTNK--SLRVIADHIRATAF 298

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           L++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  L   MG+AYP +   +
Sbjct: 299 LVSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVQVMGAAYPNMASQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I E LR E+ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT+G PLD+  D+
Sbjct: 359 ARITEVLRVEEERFFETLATGMQILDEALA--GGVKVLPGEVAFKLHDTYGFPLDLSADV 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G+  +D   F  A+E Q+++ RA           K+  +L+       F+GY+ L 
Sbjct: 417 CRENGVE-VDSAGFTAAMEAQKAKGRAAGK-------FKMDKALEYTGAGNTFVGYEHL- 467

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   S+ + A+   G  V E  +GQ   +V D TPFYAE+
Sbjct: 468 ----------------------TQSAKIVALYADGTAVSELKAGQDGVLVLDTTPFYAES 505

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G    D    ++ D QK    +F HH  ++ G+LR   ++   +D   R    
Sbjct: 506 GGQVGDEGAVFSDAGLFEVGDTQKIKADVFGHHGTLKTGVLRVGDAVTAHVDAAKRAATV 565

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHL+H AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  + 
Sbjct: 566 RNHSATHLMHKALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTAEQIRQIEAKVNAEVL 625

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            N     R+M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHV +TG+
Sbjct: 626 ANAAAQARVMDIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVHATGD 679

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  +V E  + AG+RRIEA+TG  A  +L   ++ + + A+ LK     +  R+ +I 
Sbjct: 680 IGLFKVVGEGGVAAGVRRIEAVTGANALHYLQDLEDTVGAAAATLKTPVAELGNRLGQIV 739

Query: 765 EEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKK 819
           ++ + L+   A  K KL     D       DVN +  +   +   D+K L+  MD L+ K
Sbjct: 740 DQVKALEKEVAALKGKLASAQGDELVSSAVDVNGVKVLAAKLEGADAKTLRDTMDKLKDK 799

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +++ +I+L  +  + K  +   VT D   +  A +LA   A  + GG GGG+  MA +GG
Sbjct: 800 LKTAVIVLGAVDGD-KVQIAAGVTNDTTAKVKAGELANFVASQV-GGKGGGKADMAMAGG 857

Query: 880 PNGNKADQAIAGVASFL 896
               K   A+A V +++
Sbjct: 858 TEPAKLAGALASVQAWV 874


>gi|148546681|ref|YP_001266783.1| alanyl-tRNA synthetase [Pseudomonas putida F1]
 gi|148510739|gb|ABQ77599.1| alanyl-tRNA synthetase [Pseudomonas putida F1]
          Length = 897

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/897 (42%), Positives = 532/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 24  MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  
Sbjct: 83  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWL 142

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 143 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 202

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 203 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 262

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 263 ERVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 320

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 321 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 380

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 381 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 439

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G     
Sbjct: 440 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDSATEFLGYDTTEG----- 487

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 488 ------------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGD 529

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 530 SGFLQAGAARFDVRDTTK-TGGAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSAT 588

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV 
Sbjct: 589 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVE 648

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 649 TELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 704

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 705 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 764

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 765 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 824

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 825 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 879


>gi|88813103|ref|ZP_01128344.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88789587|gb|EAR20713.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 869

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/903 (41%), Positives = 537/903 (59%), Gaps = 47/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+ N HE++PSSSL+P NDPTL+FTN+GMV FK  F G E+  Y   
Sbjct: 5   KTSAEIRQAFLDYFRANDHEIVPSSSLVPTNDPTLLFTNAGMVQFKETFLGHERRPYSRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   L 
Sbjct: 65  ASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLQLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            +RL++TV++ED+EA  +W +  G++ ++  RI  +DNFW+M +TGPCGPCSEIF+D G 
Sbjct: 125 PQRLWVTVFEEDDEAANIWLEEIGVAPERFARIGAHDNFWAMGDTGPCGPCSEIFYDHGP 184

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS++ +G+R++EIWNLVFMQ+++        LP+  +DTGMGLER+A V+Q  
Sbjct: 185 EVAGGPPGSAQADGDRFVEIWNLVFMQYDRDEHGRLSALPRPCVDTGMGLERIAAVVQGM 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            NN++IDLF HL+ ++ +V G     NN  + RVI DH+R+ +FLI DG+ P NEGRGYV
Sbjct: 245 HNNFEIDLFHHLVHSAARVAGSADLSNN--SLRVIADHIRACAFLIVDGVFPGNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG  E     L+  L  +MG+AYP L Q +   E  L+ E+ERF +
Sbjct: 303 LRRIIRRAIRHGYKLGIEEAFFYRLVSPLVEKMGAAYPALEQGRAQAERILKQEEERFRE 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL++GL LL+G L  L + + + G   FKLYDT+G P+D+  DI   RGL G+D+  F Q
Sbjct: 363 TLEQGLKLLEGDLRRL-ESQTIPGATIFKLYDTYGFPVDLTGDIARERGL-GLDMPGFEQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A       A        +   +  +    +  G T+F GYD L+                
Sbjct: 421 A------MAAQRERARAASAFKVDYKETGDFEGHTEFTGYDHLQD--------------- 459

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     +V A+  +G       +G++  V+ D+TPFYAE+GGQ+GD G  +   + 
Sbjct: 460 --------QGLVTALYAEGRRRNHLEAGEQGMVLLDRTPFYAESGGQVGDRGWLLASELE 511

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D  K   G F H  +V +G L     +   +D + R+   +NHSATHLLH AL  +
Sbjct: 512 FEVWDTVKY-RGAFGHVGVVRQGRLAAGERVSTRVDAERRQATVLNHSATHLLHAALRRV 570

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H  Q GS + PD LRFD TH +P++  +L+ +E  VND I  N     R M+ ++A+
Sbjct: 571 LGEHAQQKGSLVAPDRLRFDFTHFEPVSREQLERVERLVNDRIRANDVADVRYMSYDEAM 630

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRV+       G  S+ LCGGTHV  TG+I    +VSE+ I AGI
Sbjct: 631 DFGAVALFGEKYADTVRVMRF-----GEFSTELCGGTHVRRTGDIGFFKLVSETGISAGI 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITGQ A +       +L  +   L+ S  N+  R+E++ +  R+L+   A+++ +
Sbjct: 686 RRIEAITGQCAVAWAETVSRQLAHVGELLRCSSDNIELRLEQLIDRSRQLEKELARQQQK 745

Query: 781 LNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L  +           I  V  ++  +   D++ L+  +D L+ K+ S +++L  +  E K
Sbjct: 746 LASQAGTNLADRAVLIDGVKVLATTVEGGDNRALRDTLDQLKHKLGSAVVVLASVDGE-K 804

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             ++  VT+D  DR  A +L    A  + GG GGGR   AQ+GG +  + DQA+  VA++
Sbjct: 805 VRLVGGVTKDFTDRLKAGELINAVASQI-GGRGGGRADFAQAGGSDPTQLDQALESVAAW 863

Query: 896 LKK 898
           +++
Sbjct: 864 VRE 866


>gi|225849840|ref|YP_002730074.1| alanyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645058|gb|ACO03244.1| alanyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 878

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/908 (39%), Positives = 531/908 (58%), Gaps = 44/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR +FL +F++ GH  + S+S+IP  DPTL+F N+GMVPFKN+F G E+  Y+ 
Sbjct: 3   FLTANQIRESFLRYFEERGHTRVKSASIIPETDPTLLFVNAGMVPFKNVFLGLEEKPYKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QK  R  GKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+  ++
Sbjct: 63  AVSCQKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKREAIQFAWEYLTEVLEI 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L ++V++ED+EAF++W K+ GL  +KI R+   DNFWSM ETGPCGPCSEI++D+G
Sbjct: 123 PEEKLLVSVFEEDDEAFEIWNKVIGLPEEKIHRLGVEDNFWSMGETGPCGPCSEIYYDRG 182

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E       GS E+  RY+E+WNLVFMQ+ +        LPK +IDTGMGLER+A+VLQ  
Sbjct: 183 EAFGNPELGSPEDI-RYLEVWNLVFMQYNRDKDGRLTPLPKPNIDTGMGLERIASVLQGV 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI-----VNHRVIVDHLRSSSFLIADGILPANE 295
            +NY+ DLF  LI+ ++ V+G  Y+  +      V  RVI DHLR+ +FLI+DG+ P+NE
Sbjct: 242 NSNYETDLFMPLIEFAQSVSGKSYDPEDPGSENTVAMRVIADHLRAITFLISDGVFPSNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ Y   LG   P +   +  +   M   YPELI  +  I+  ++SE+
Sbjct: 302 GRGYVLRRILRRALRYGMELGIERPFLFEGVDVVVDIMKEPYPELIGNRSFIKNLVKSEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F KTL +GL +L  ++    K+    + G  AF LYDT+G P+D+++DI    G  G+
Sbjct: 362 EKFIKTLRKGLEILYDIIQKAKKEGRNHITGKEAFLLYDTYGFPVDLLEDIARDNGF-GV 420

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           DI  + + LEEQ+ RARA      +   + ++  LK K     F+GY+ L          
Sbjct: 421 DIAEYYKLLEEQKERARASWK-SQAKEIKPVYLELKNKLPENVFVGYERLEVDD------ 473

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + + +++++   V+    G+  E+V D TPFY E GGQ+GD G 
Sbjct: 474 ----------------AQILSVLKEDREVDTLHEGETGEIVLDVTPFYPEKGGQVGDRGI 517

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             GDG    + D Q   EGI VH   V  G ++   ++   +D   R  +  +H+ATHLL
Sbjct: 518 IEGDGFLFDVVDTQTPVEGIIVHRGKVIHGTVKKGETVSAKVDKDTRLDIMRHHTATHLL 577

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD TH + +T  ++K +E+ VN+ I +N PV+ + 
Sbjct: 578 HAALRNLLGDHVKQAGSLVHPDYLRFDFTHFESLTDEDIKRVEELVNEEIMKNEPVICKE 637

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++AI SGA A+   KY D VRV+S         S+ LCGGTHVS TG+I    I+SE
Sbjct: 638 MPYDEAIKSGAIAIFDEKYGDTVRVISAGI------STELCGGTHVSRTGDIGYFKIISE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +++ +G RRIEA+ G++A    + +   ++++   L   +  ++ ++E +  + ++ Q  
Sbjct: 692 TAVASGTRRIEAVAGRKAVERGLREHFLIENVKRALTAKEDEIIDKIETLKLKLKEAQRE 751

Query: 774 HAKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
               K +  V+     L+  +   +      +  +   +L+ + D  + K+   ++M+  
Sbjct: 752 IENIKKKSVVDRITDILTVEEKEGIKIAYGSVEGLQPNDLRDLADVARSKLGRSVVMIAS 811

Query: 830 ISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + KEK K + ++ V++DL DR  A ++ +  A  L GG GGGRP MAQ GG   +K  +A
Sbjct: 812 VDKEKNKVNFIVAVSKDLTDRIKAGEIVKKVAPAL-GGKGGGRPDMAQGGGTEPSKLKEA 870

Query: 889 IAGVASFL 896
                  +
Sbjct: 871 FNIFRKEI 878


>gi|220931419|ref|YP_002508327.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992729|gb|ACL69332.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 876

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/907 (41%), Positives = 545/907 (60%), Gaps = 48/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++    +R  +L+FF+  GH +LPS+ LIP NDP+L++ N+GM PFK  F G++KP    
Sbjct: 2   VTTSDELRKAYLDFFKDRGHLVLPSAPLIPRNDPSLLWINAGMAPFKPYFDGRKKPPKTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           ++T QKC+R     ND++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +T+  +L
Sbjct: 62  ISTSQKCIRT----NDIENVGKTARHLTFFEMLGNFSFGDYFKEEAIEWAWEFVTRVLNL 117

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL+IT+Y +D+EAFK+W    G+  ++I+R+   DNFW +  TGPCGPCSEI +D+G
Sbjct: 118 EENRLWITIYKDDDEAFKIWHDKVGVPENRIVRMGKKDNFWEIG-TGPCGPCSEIHYDRG 176

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E            EG+R++EIWNLVF Q+ +    E   LP+ +IDTGMGLER+A++LQ 
Sbjct: 177 EEFGNSSEDVIGGEGDRFLEIWNLVFTQYNRTEDGEYLSLPQKNIDTGMGLERVASLLQG 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +N++ DL K +I    Q +G++Y     V  RVI DH+R+ +  I DG+LP+NEGRGY
Sbjct: 237 VNSNFETDLLKPIINFVSQDSGVQYTEGQRVPFRVISDHIRAVTMAIHDGVLPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+RR++RRA+ Y   L Y EP +  ++P +   M   YPEL + +  +   ++SE+ERF 
Sbjct: 297 VIRRLLRRAVRYGGKLNYEEPFLYKIVPVVVDIMSGGYPELKEKEEHVSSVVKSEEERFF 356

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL++GL +L+ ++  +    ++IL+G  AFKLYDT+G PLD+ +D+L   G   +D   
Sbjct: 357 QTLEQGLNILNEMMEEMKDKGEKILSGKNAFKLYDTYGFPLDLTRDVLAEHGYK-VDEDV 415

Query: 418 FNQALEEQRSRARAHSLGLGSGTTE--KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           F + +E+QR RAR     +G   T+   I+  L+E+ G T+F GY  L            
Sbjct: 416 FTREMEKQRERARQARADVGFSGTDGEGIYKELREELGETEFTGYRSLSN---------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        ++ +  IV+ G+ VE   +G+K E++ + TPFYA  GGQ+GD G  I
Sbjct: 466 -------------TTRIVGIVKDGQPVESLNNGEKGEIILNVTPFYARGGGQVGDKGILI 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R ++ D +KK  G+ VH+  VE+G  R +  +   +D + R  ++ NHS THLLH 
Sbjct: 513 DSEHRARVYDTRKK-GGLTVHYTEVEKGEFRIDQVVEARVDEELRYNIARNHSTTHLLHK 571

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L  +LG HV+Q+GS + PD LRFD +H  P+T  E+  IED VN+ I  NLPV    M 
Sbjct: 572 TLKEVLGDHVNQSGSLVAPDRLRFDFSHYAPLTEEEINRIEDTVNEKILSNLPVEILEMP 631

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A   GA AL G KY   VRVV +     G +S  LCGGTHV  TGEI    IVSE S
Sbjct: 632 FEKAKEMGAVALFGEKYGHIVRVVKI-----GDYSIELCGGTHVDRTGEIGSFKIVSEGS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+    H+   D  +K ++S LK S   V+GR+  + EE  +L+    
Sbjct: 687 VAAGVRRIEALTGKSVLEHIRKNDNTIKKISSILKTSPDEVIGRLSGLLEEQNELENKLQ 746

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K QL    +        KI  V  ++  +  ++S  L+ + D L++K++SGII+L   
Sbjct: 747 SLKDQLATSRVDELVDEVQKINGVKVLTAELKGIESDNLRKLSDKLKEKMESGIIVLAS- 805

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +   K   + VVT+DL++R F+A  L    A+V GGGGG GRP MAQ+GG   +K  +A+
Sbjct: 806 NLGNKVIFVSVVTDDLVERGFHAGKLIGKVARVTGGGGG-GRPDMAQAGGKKVDKITEAL 864

Query: 890 AGVASFL 896
                 +
Sbjct: 865 DEGKRII 871


>gi|238758257|ref|ZP_04619436.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238703587|gb|EEP96125.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 847

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/884 (43%), Positives = 538/884 (60%), Gaps = 56/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANEVG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+ E+G+RY
Sbjct: 121 VPCERIIRIGDNKGGAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAQEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG     +   + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 EVTGAADLSSK--SLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
            D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G
Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +      + SL     A+QF GYD                            + V A+ +
Sbjct: 416 AD-----YNSLIRVDSASQFSGYD-----------------------HVHQQATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E  +G++  VV +QTPFY E+GGQ+GD G          + D QK  + I  H 
Sbjct: 448 NGEAVDEIHAGEEAVVVLNQTPFYGESGGQVGDKGELKNATAVFTVVDTQKYGQAI-GHL 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             + +G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    L
Sbjct: 507 GQLTQGTLRVNHSVDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +NLPV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVETEVMELDTAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIAQLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792
           Q + L+ +A  +K    N+  +V  + +  + L+    + K Q           S   + 
Sbjct: 682 QSDLLQDVAHLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLVK 741

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A
Sbjct: 742 GAKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TAADDKVSLIVGVTKDLTGKVKA 800

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L    A+ + GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843


>gi|255065962|ref|ZP_05317817.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049873|gb|EET45337.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 874

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/910 (40%), Positives = 525/910 (57%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALT--KGSNKLDGEIIFKLYDTYGFPYDLTADICRERNI- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +E       A      +    K    L      T+F GY+          
Sbjct: 417 DLDEEGFNREME-------AQRARARAAQNFKANAQLDYAGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E  +G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQDTKIIALYKASEAVDELQAGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIFAGENCFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   AK K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L  +  A DL + +A+ + GG GGGRP +AQ+GG +  K  
Sbjct: 802 LAAV-NDGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKLP 859

Query: 887 QAIAGVASFL 896
           + +  V  ++
Sbjct: 860 EMLGSVEGWV 869


>gi|313902388|ref|ZP_07835791.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
 gi|313467319|gb|EFR62830.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965]
          Length = 905

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/900 (41%), Positives = 542/900 (60%), Gaps = 43/900 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL FF+++GH ++PSSSL+P +DPTL+FTN+GMV FK++FTG+EK  Y+  TT
Sbjct: 18  AAEIRERFLRFFERHGHTIVPSSSLVPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATT 77

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L + 
Sbjct: 78  AQKCMRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKREAIHFAWTFLTEELGLPRE 137

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL+ T++ +D+EAF LW++++G+ A++I+R+   DNFW+M +TGPCGPCSEI +D+GE  
Sbjct: 138 RLWATIFRDDDEAFGLWQEVTGIPAERIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEF 197

Query: 184 PGG---LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                     + + +R++EIWNLVFMQF +        LP+ SIDTGMGLER+A+V+Q  
Sbjct: 198 RCDAEVCGIGACDCDRWLEIWNLVFMQFNRDESGRLEPLPRPSIDTGMGLERIASVMQGV 257

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            +N+D DLF+ L++A E +TG  Y+G       RVI DH R+ +FLIADG+LP+NEGRG+
Sbjct: 258 GSNFDTDLFRPLLRAVEDLTGRPYDGGEAGFPFRVIADHARACTFLIADGVLPSNEGRGH 317

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ + R+LG  EP +  L+  +   MG AYPE+ Q    +   +R E+ERF 
Sbjct: 318 VLRRILRRAVRFGRILGLEEPFLYRLVDTVGEVMGDAYPEVRQRADYVRRVIRGEEERFF 377

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLD+G+ +L  V+    +  D +++G+ AF LYDT+G PLD+ +D     GL  +D   
Sbjct: 378 RTLDQGMAILAEVIERARQRGDGLIHGEEAFVLYDTYGFPLDLTEDAAEEAGLR-VDREG 436

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+  QR RARA                      AT+F GY+ L              
Sbjct: 437 FERAMAVQRQRARAAREVEEGWDPGSPLARALADEPATEFTGYERLED------------ 484

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V+ +V++ E  + A +G++V V+ D+TPFYAE GGQ+GDTG     
Sbjct: 485 -----------EGTVRLLVRRDEPADRADAGEEVGVILDRTPFYAERGGQVGDTGWLETP 533

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             RL++ D Q    G  +H A V  G ++    +   +D   R  +  NH+ATHLLH AL
Sbjct: 534 RARLEVLDTQPLPGGRILHKARVVEGAVQVGDRVRARVDAARRAAIMRNHTATHLLHAAL 593

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD LRFD TH +  T+ +L++IED +N  I + +PV     + E
Sbjct: 594 KRVLGDHVNQAGSLVAPDRLRFDFTHFEAPTAGQLRAIEDEINQQILRGIPVRWYWTSLE 653

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+ +GA AL G KY + VRVV +     G +S  LCGGTHV ST +I L    +E S+ 
Sbjct: 654 EALEAGALALFGEKYGNEVRVVQI-----GDYSLELCGGTHVVSTSDIGLFKFTAEGSVA 708

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AG+RR+EA+TG  +  +L  Q+  L  LA  L+V   ++  R+E + E +R+L  QL   
Sbjct: 709 AGVRRVEAVTGWGSLEYLRRQEAVLDRLAGTLRVPVDDLPARLEALVESHRELERQLRQL 768

Query: 776 KRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L     D       ++A V  ++  +   D++ L+   D L+++     ++L G   
Sbjct: 769 RSRLARQAADGLLEAAPQLAGVRVIAGELPVDDAEVLRETADYLRQRAGEAAVLL-GARA 827

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             +A ++  VT    +R  +A  L    A+ LGGGGG GRP +AQ+GG +  +  +A+  
Sbjct: 828 GGRALLVAAVTPGAQERGLHAGRLVGEVARRLGGGGG-GRPDLAQAGGRDPGRLPEALEQ 886


>gi|297569857|ref|YP_003691201.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925772|gb|ADH86582.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 879

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/908 (42%), Positives = 548/908 (60%), Gaps = 41/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N + IR  F+E+F + GH L+ SS L+P  DPTL+FTN+GMV FK +FTG+EK  Y   
Sbjct: 1   MNGNEIRQRFIEYFTQRGHTLVESSPLVPHEDPTLLFTNAGMVQFKKVFTGEEKRDYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI++AWD LTKE  L 
Sbjct: 61  VTCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRMAWDFLTKEIGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY++D+EA+ +W+KI  L   +I+R+   DNFW+M +TGPCGPCSEI  DQGE
Sbjct: 121 PAKLWVSVYEDDDEAYAIWEKIEDLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGE 180

Query: 182 CI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  P    G   + +R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+A V Q 
Sbjct: 181 AVACPEENCGVDCDCDRFLEIWNLVFMQYERDEQGNLTPLPKPSIDTGMGLERIAAVAQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K NNYD DLF+ +IQ + Q+ G+ Y  N       RVI DH R+++FL+ADG+LP+NEGR
Sbjct: 241 KINNYDSDLFQPIIQRTCQLAGISYGANLRADTALRVIADHARATTFLVADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ + R LG TEP +  +  A+   MGSA+  L +++ L+ + +R E+ER
Sbjct: 301 GYVLRRIMRRAVRFGRSLGLTEPFLGEVCSAVADGMGSAWGHLGESRELLGKVVRHEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL +L   +  L  +  + + GD  FKLYDT+G P+DI +D+    GL   D 
Sbjct: 361 FLETLDHGLGMLASEIERLQGEGIKTIAGDFIFKLYDTYGFPVDIAKDVAQEEGLQA-DE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F  A+  QR ++R    G G G     +  L E+   ++F+GY+  R           
Sbjct: 420 EGFGAAMARQREQSRRSWKGGGLGELGPGFKELLERGVKSRFVGYETRRHHG-------- 471

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         ++V  + Q+GE+ +EA +G  V +V D+TPFYAEAGGQ+GD G   
Sbjct: 472 --------------TLVAVLDQRGELHDEAAAGTLVSLVCDETPFYAEAGGQVGDWGEIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G   R ++ +  K  E + VH A V  G L     ++L +    RRQ + +H+ATHLLH 
Sbjct: 518 GGQGRAKVLNTLKIGEHLVVHQAEVAEGKLAVGAEVLLAVAEGRRRQTAAHHTATHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  + LRFD TH  P++  E++ +E+ VN+ I  N  +    + 
Sbjct: 578 ALRRVLGEHVKQAGSLVDAERLRFDFTHFSPLSREEIRRVEELVNEEIRANTRLEVATLP 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           RE+A+ SGAAAL G KY D VRVV+V     G  S  LCGGTHV +TGEI L  I SE  
Sbjct: 638 REEALQSGAAALFGEKYGDTVRVVAV-----GDFSKELCGGTHVGATGEIGLFKITSEGG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I A  RRIE   G  A S +   +++++  A  LK +   +  R++++    ++L+   A
Sbjct: 693 IAASTRRIEGCCGGLALSRVHALEDEVQQWAGRLKTNPAELGVRLDKLLARQKELERQLA 752

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +   + +  D         ++  +   +  +     K L+   D L+ K+ SGI +L   
Sbjct: 753 ELAAKASRFDAESVLRQATEVNGIKVATCRLEVDSVKTLREAGDKLRDKMGSGIAVLAA- 811

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K S+L +V++DL DR+ A D+ + +A+++ GG GGGRP MAQ+GG +  K D A+A
Sbjct: 812 EPAGKVSLLALVSKDLTDRYRAGDIVKQAAQLV-GGSGGGRPDMAQAGGGDPEKIDHALA 870

Query: 891 GVASFLKK 898
            V   + +
Sbjct: 871 AVPGIVAE 878


>gi|294505017|ref|YP_003569079.1| alanyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|262363080|gb|ACY59801.1| alanyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262367006|gb|ACY63563.1| alanyl-tRNA synthetase [Yersinia pestis D182038]
 gi|294355476|gb|ADE65817.1| alanyl-tRNA synthetase [Yersinia pestis Z176003]
          Length = 847

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/884 (43%), Positives = 541/884 (61%), Gaps = 56/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+ +W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVTVYETDDEAYNIWANEVG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPCSEIFFD G+ I GG PGS+E +G+RY
Sbjct: 121 VPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSAEEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIAAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
            VTG     +   + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 DVTGATDLSSK--SLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLKTEEEQFARTLERGLALLDDELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
            D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G
Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +      + SL     A+QF GYD ++                         + V A+ +
Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVQ-----------------------QHATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E  +G++  VV ++TPFY E+GGQ+GD G          +TD QK  + I  H 
Sbjct: 448 NGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKGELKNATATFSVTDTQKYGQAI-GHV 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I+  G LR   S+   +D   R ++ +NHSATHLLH AL  +LG HV+Q GS +    L
Sbjct: 507 GILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHLLHAALRNVLGEHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGGTH S TG+I L  I++ES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIALLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792
           Q + L+ +A  +K    N+  +V  + +  + L+    + K Q           S   I 
Sbjct: 682 QSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLIN 741

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V  +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A
Sbjct: 742 GVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTGKVKA 800

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L    A+ + GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPAALASVEAWV 843


>gi|119505423|ref|ZP_01627496.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma
           proteobacterium HTCC2080]
 gi|119458701|gb|EAW39803.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma
           proteobacterium HTCC2080]
          Length = 866

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/901 (41%), Positives = 537/901 (59%), Gaps = 46/901 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F++ GH  + SSSL+P +DPTL+FTN+GM  FK  F G E   YQ  
Sbjct: 1   MKTAEIREAFLSYFEEQGHTRVESSSLVPHDDPTLLFTNAGMNQFKETFLGLETRAYQRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+  +L 
Sbjct: 61  CTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTEVLELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA  +W    G+    + R+   DNFW M +TGPCGP SEIF+D G 
Sbjct: 121 KERLWVTVHISDDEAAAIWIDEIGIDPSCLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS+++  +RYIEIWNLVFMQF +    E   LP  S+DTGMGLER+A VLQ  
Sbjct: 180 HVPGGPPGSADDDLDRYIEIWNLVFMQFNRDGAGELHPLPAPSVDTGMGLERIAAVLQHV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI+A+     +        + RVI DHLRS +FLI DG++P+NEGRGYV
Sbjct: 240 HSNYEIDLFQTLIKATASALAVADLEEK--SLRVISDHLRSCAFLITDGVVPSNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG T+P    L+P L  EMG+AYP+L  ++  I + LR+E+++F +
Sbjct: 298 LRRIIRRAVRHGNKLGATKPFFAALVPVLVAEMGAAYPDLQASESAIVKALRAEEDQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD G+ +L+  LS L +  +L G++ F+LYDT+G P+D+  DI   R L  +D+  +++
Sbjct: 358 TLDNGMAILEEALSGL-QGAVLPGELVFRLYDTYGFPVDLTNDIARERNLT-LDVEGYDE 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A+ +QR R++       SG+ +  +       G TQF GYD   GS              
Sbjct: 416 AMAQQRKRSQE------SGSFKVDYNESVTIPGETQFTGYDSTEGS-------------- 455

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      + A++ +GE+ +   +G++  VV + TPFY E+GGQ+GD G   G+  R
Sbjct: 456 ---------GTILALLAEGEMAQSLAAGERGVVVLNSTPFYGESGGQVGDCGLLQGESSR 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +TD  K A+G   HH  V  G L     L  T+D + R+++ +NHSATHLLH AL  +
Sbjct: 507 ADVTDTTK-AQGHHFHHVHVTSGSLNVGDVLAATVDNELRQRIRLNHSATHLLHEALRRV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS +  + LRFD +H + +++A++  +   VN+ I  N    T++M+ + A+
Sbjct: 566 LGDHVVQKGSLVDSERLRFDFSHGEAVSAAQIDELTQIVNEQIRGNSATTTQLMDMDSAV 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A+GA AL G KY D VRV+S+  E     S  LCGGTHV  TG+I LL +  ES + AG+
Sbjct: 626 AAGATALFGEKYGDEVRVLSMGSEG---FSVELCGGTHVDRTGDIGLLLVTGESGVAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEAITGQ A    +   +++  +A  LK +   VV +   +  E R+L+   A+ K +
Sbjct: 683 RRIEAITGQAALVQSLASSQRVVDVAEVLKATPAAVVEKAGVLRSEVRELEKEVARLKQK 742

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          S  ++  +  ++  I   D   L+  +D  + K+ + +++L  +  + K
Sbjct: 743 LATSSGGDLTQSAVEVGGIKVLATQIEGADVATLRDTLDQCKNKLGTAVVLLAAVEGD-K 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  VT+D+ DR  A D  +  A  LGG GG GRP MAQ GG +      A+A V  +
Sbjct: 802 ISLVAGVTKDVTDRVRAGDAIKEFAGRLGGKGG-GRPDMAQGGGTDVAGLPAALAAVPDW 860

Query: 896 L 896
           +
Sbjct: 861 V 861


>gi|241765465|ref|ZP_04763432.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241364775|gb|EER59764.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 874

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/909 (41%), Positives = 522/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   TVADIRKTFLDFFASKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 66  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 126 DRLLATVYQEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + TG+    N   + RVI DH+R+++FL++DG++P+N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAGRETGVTDLNNK--SLRVIADHIRATAFLVSDGVIPSN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP L + +  I E L++E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGKKTPFFHKLVADLVRLMGDAYPALREQEQRITEVLKAE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+   R +  +D
Sbjct: 364 EERFFETLANGMEILDAALD--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERDVE-VD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E+Q+++ARA           K+  +L+    A QF GY+ L           
Sbjct: 421 EAGFKTAMEKQKAQARAAGK-------FKMDKALEYTGAANQFTGYEHLA---------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + AI   G       +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 464 -------------ETAKIVAIYVDGTSAAALKTGQNGVVVLDTTPFYAESGGQVGDEGVI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D  K    +F HH  +E G L    ++   ++   R     NHS THL+H
Sbjct: 511 TSGSARFAVGDTLKVKADVFGHHGTLEHGTLNVGDTVQAQVNTAVRAATMRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +  D  RFD  H+  +T+AE++ IE  VN+ I  N P   R+M
Sbjct: 571 KALREVLGSHVQQKGSLVNADRTRFDFAHNAAVTNAEIREIERRVNEEILANQPTQARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +VSE 
Sbjct: 631 DIESAQKTGAMMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVSEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG  A ++L   ++ +   A  LK     + GR+ +  E  R L+   
Sbjct: 685 GVAAGVRRIEAVTGANALAYLQQLEDTVHQAAGTLKAPVAELNGRIGQALEHARALEKEV 744

Query: 775 A--KRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D    +  +V  +  + +     D+K L+  MD L+ K+++  I+L  
Sbjct: 745 AALKGKLASSQGDELVTQAVEVKGLKVLAAALPGADAKTLRDTMDKLKDKLKTAAIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + R  A +L    A+ +GG GG G+P MA +GG + +K   A+
Sbjct: 805 VDGD-KVQLAAGVTSDTVGRIKAGELVNFVAQQVGGKGG-GKPDMAMAGGTDASKLPAAL 862

Query: 890 AGVASFLKK 898
           A V  ++ +
Sbjct: 863 ASVTGWVTQ 871


>gi|304413367|ref|ZP_07394840.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304284210|gb|EFL92603.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 893

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/916 (41%), Positives = 553/916 (60%), Gaps = 60/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH ++ SSSL+P NDPTL+FTN+GM  FKN+F G E+      
Sbjct: 13  KSTAEIRQMFLDFFDSKGHRIVASSSLVPHNDPTLLFTNAGMNQFKNVFLGLEQSDSVRA 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F 
Sbjct: 73  TSSQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHFAWELLTSEQWFH 132

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L+ITVY  DEE +++W    G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 133 LPKDKLWITVYQTDEETYRIWADEVGIPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 192

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ + GG PGS  EEG+RYIEIWN+VFMQF +Q       LP+ S+DTGMGLE
Sbjct: 193 TEIFYDHGDHLWGGPPGSPEEEGDRYIEIWNIVFMQFNRQLDGTMLALPQPSVDTGMGLE 252

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ+  +NY+IDLF+ LI+A  ++T +    N   + RVI DH+RS +FLIADG++
Sbjct: 253 RIAAVLQQVNSNYEIDLFRDLIKAIAEITAVSDLSNQ--SLRVIADHIRSCAFLIADGVM 310

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG        L+  L + MGSA   L Q + LIE+ L
Sbjct: 311 PSNENRGYVLRRIIRRAIRHGHMLGIKRVFFYKLVAPLISVMGSAAEALKQQQSLIEQWL 370

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS +  D  L G+ AF LYDT+G PLD+  D+   R L 
Sbjct: 371 KTEEEQFTRTLERGLALLDEELSKITGD-TLAGETAFSLYDTYGFPLDLTADVCRERHLK 429

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+  QR RAR       S      + +L +  G ++F GY+          
Sbjct: 430 -VDEAGFERAMAAQRLRAR------DSNVFATDYNNLIKVEGKSEFSGYEH--------- 473

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE------AVSGQKVEVVFDQTPFYAEAG 525
                             +++ A++  G+ V+E      A   +++ V+ D+TPFYAE+G
Sbjct: 474 ------------QHLQQQALIIALIHNGKAVDEIHFSDKAAPDEEILVILDKTPFYAESG 521

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD+G  + D     + D QK       H   +  G LR   S+   +D + R ++ +
Sbjct: 522 GQVGDSGKLVNDSAHFTVRDTQKH-GATIAHVGQLTTGCLRIGESINAAVDAERRHRIRL 580

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL   LG HV+Q GS +    LRFD +HS+ +T A+++ +E+ VN  I  
Sbjct: 581 NHSATHLLHAALRQTLGQHVAQKGSLVNDHYLRFDFSHSQAMTKAQIQQVENQVNAEIRA 640

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NLP+ T+IM  E+A  +GA A  G KY+D+VRV+++     G  S  LCGGTH + TG+I
Sbjct: 641 NLPIETKIMALEEAKKTGAMAFFGEKYSDKVRVLTI-----GTFSIELCGGTHTNRTGDI 695

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I +ES+  AGIRRIEA+TG+ A + L  +   L  ++  LK    N++ ++ +I E
Sbjct: 696 GLFRITAESATAAGIRRIEAVTGEAAMTLLHQESHLLHKISYQLKGDSSNLLDKISKIQE 755

Query: 766 EYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             + L+    + K Q   +       S  +I     +   +  +  + LK+++D+L++++
Sbjct: 756 HNKNLEQELQQLKAQQAKQKSISLSDSAQQIKGGKLLVKQVDNIAPEMLKTLIDSLKQEL 815

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S II+L    ++ K +V++ VT++L D+  A +L    AK + GG GGGR  MA  GG 
Sbjct: 816 KSAIIVLA-TKQDNKVNVIVGVTKNLTDKIKAGELVADLAKQV-GGKGGGRAEMAMGGGT 873

Query: 881 NGNKADQAIAGVASFL 896
           N      A+A V +++
Sbjct: 874 NVATLPAALASVRAWV 889


>gi|312962605|ref|ZP_07777095.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283185|gb|EFQ61776.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 872

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/892 (43%), Positives = 533/892 (59%), Gaps = 54/892 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVSSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT    L
Sbjct: 60  ATSSQKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W +  G+  +++IRI  N       DNFW+M +TGPCGPC+
Sbjct: 120 PKEKLWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLER
Sbjct: 180 EIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+Q   +NY+IDLF +L+ AS    G   E  +  + +V+ DH+RS  FLIADG+LP
Sbjct: 240 ISAVMQHVHSNYEIDLFTNLLSASAAAIGCANESQS--SLKVVSDHIRSCGFLIADGVLP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA  +   LG T      ++ AL  EMG A+PEL Q +  IE  L+
Sbjct: 298 SNEGRGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGDAFPELKQQQGNIERVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+ GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L  
Sbjct: 358 AEEEQFSKTLEHGLKILEQDLAEL-KGTVVPGDVVFKLYDTYGFPMDLTADIARERELT- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F + +E QR RAR+ S      +    + +L +   AT+F GY    GS      
Sbjct: 416 IDEAGFEREMEAQRVRARSAS------SFGLDYNTLVKVDVATEFTGYKATVGS------ 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + A+ + G+ V+    G +  VV +QTPFYAE+GGQ+GD G
Sbjct: 464 -----------------AKIVALYKDGKSVDVLNEGDEAVVVLNQTPFYAESGGQVGDCG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R ++ D  K   G F+HH ++  G L     +   +D   R   ++NHSATHL
Sbjct: 507 FLSSTSGRFEVRDTTK-TGGAFLHHGVLVLGNLTIGAPVDTQVDADVRHATALNHSATHL 565

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD +H + I  A++K++ED VN  I +N  V T 
Sbjct: 566 LHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIPPAQIKALEDIVNAEIRKNTAVQTE 625

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + E A A GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+S
Sbjct: 626 ETDIETAKAKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIALLKIIS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R L+ 
Sbjct: 682 ESGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEK 741

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + +           S   + DV  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 742 QLEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL 801

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG
Sbjct: 802 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGG 851


>gi|255263093|ref|ZP_05342435.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255105428|gb|EET48102.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 884

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/893 (47%), Positives = 572/893 (64%), Gaps = 40/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IRT FL++++  GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MPSLNDIRTRFLDYYKSEGHEIVSSSPLVPRNDPTLMFANSGMVQFKNLFTGAESRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+++T+E  +
Sbjct: 61  ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAINYAWNMVTRELGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +TVY +D+EA  +WKK++GLS DKIIRI T+DNFW M  TGPCGP SEIF+D G
Sbjct: 121 NKDKLVVTVYHDDDEAAAIWKKVAGLSDDKIIRIATDDNFWMMGSTGPCGPSSEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R++EIWNLVFMQ+EQ     R  LP  SIDTGMG+ER+A +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRSPLPNQSIDTGMGIERVAALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  DL + LI+AS   T    +G    +HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 TNDNYATDLIRALIEASANATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +PLM  L+P+L  +MG+AYPEL QA+ LIEETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHVHLLGAQDPLMHRLVPSLVGQMGAAYPELGQAQALIEETLRLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL LLD  L  L +   L G  AFKLYDT+G PLD+ QD L  +G  G+D   F+
Sbjct: 361 QTLERGLRLLDDELDGLAEGTDLPGQAAFKLYDTYGFPLDLTQDALREKG-RGVDSDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQ+++ARA   G G      IW  + ++ GAT F+GYD                  
Sbjct: 420 EAMAEQKAKARAAWSGSGETVDATIWLDIADRDGATDFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + + AIV+ G  ++ A  G  V++V +QTPFY E+GGQ+GDTG    DG+
Sbjct: 463 ------ETAEAQITAIVKHGAEIKSATVGDTVQIVVNQTPFYGESGGQVGDTGVVHADGL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD +K A G+F+H A + +G      ++ L +D   R Q+  NHSATHLLH AL  
Sbjct: 517 SARVTDTRKTA-GVFIHIAEITKGTFEVGTAVELNVDPTRRSQIRANHSATHLLHEALRQ 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS   PD LRFD +H K ++  +L+S+E  VN  I QN  V TRIM  +DA
Sbjct: 576 SLGDHVAQRGSLNAPDRLRFDFSHGKALSLEQLQSVEAEVNAYIRQNTGVETRIMTPDDA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  +        G  +S  LCGGTHV  TG+I    ++ 
Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGAQPNSGRGSLGNTYSLELCGGTHVGRTGDIGAFVMLG 695

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  +G+RRIEA++GQ A  +L  QD +L  +AS LK    +   RV+ + +E + L  
Sbjct: 696 DSASSSGVRRIEALSGQAAMDYLRTQDGRLAEVASVLKTPAADAPARVKALMDERKALAN 755

Query: 773 IHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             A+ + +L V      +  +   +    F++ ++S V  K+L +++D  + +I SG ++
Sbjct: 756 EVAQLRRELAVSGGGQTDAPAAEDVNGTKFLAQVVSGVTGKDLPALVDDYKAQIGSGAVL 815

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           L+  +  K A     VT D  +  +AVDL R +   LGG GGGGRP MAQ GG
Sbjct: 816 LIADAGGKAAV-AAGVTADKAEAVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 867


>gi|238761735|ref|ZP_04622710.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238700249|gb|EEP92991.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 847

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/884 (43%), Positives = 540/884 (61%), Gaps = 56/884 (6%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHH
Sbjct: 1   MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145
           TFFEMLGNFSFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G
Sbjct: 61  TFFEMLGNFSFGDYFKHDAISFAWELLTSAQWFNLPKEKLWVTVYETDDEAYEIWANDIG 120

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+E +G+RY
Sbjct: 121 IPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRY 180

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  
Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG     +   + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 241 EVTGATDLSSK--SLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L T MGSA  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L 
Sbjct: 299 KETFFYKLVAPLITVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
            D  L+G+ AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G
Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +      + SL     A+QF GYD ++                         + V A+ +
Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVQ-----------------------QQATVTALFR 447

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            GE V+E   G++  VV +QTPFY E+GGQ+GD G          + D QK  + I  H 
Sbjct: 448 NGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVADTQKYGQAI-GHL 506

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G LR   S+   +D   R ++ +NHSATHLLH AL   LG HV+Q GS +    L
Sbjct: 507 GQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYL 566

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VR
Sbjct: 567 RFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+++     G  S+ LCGG H + TG+I L  I+SES   AGIRRIEA+TG+ A + L  
Sbjct: 627 VLTM-----GDFSTELCGGIHANRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQ 681

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792
           Q + L  +A  +K    N+  +V  + +  + L+    + K Q           S   I 
Sbjct: 682 QSDLLSDVAHLVKGDTNNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLIN 741

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V  +   +  V+ K L++++D L+ ++ S II+L   + + K S+++ VT+DL  +  A
Sbjct: 742 GVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIVGVTKDLTGKVKA 800

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L    A+ + GG GGGRP MAQ+GG +      A+A V +++
Sbjct: 801 GELIADIAQQV-GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843


>gi|148657329|ref|YP_001277534.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148569439|gb|ABQ91584.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 931

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/928 (40%), Positives = 538/928 (57%), Gaps = 67/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y   T
Sbjct: 31  SSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRAT 90

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK F+L  
Sbjct: 91  TVQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVFELPV 150

Query: 123 RRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV++ D+E      A +LW   +G   D+++R    DNFW MA+TGPCGPCSEI 
Sbjct: 151 ERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPCSEIT 209

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQFE+        L + S+DTGMGLERMA 
Sbjct: 210 IYIGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFER---STMQPLHRPSVDTGMGLERMAM 266

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  LI+    + G         +  +R + DH R+ +FLIADG+LP 
Sbjct: 267 VMQGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADGVLPG 326

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA+   R +G+ +P +  ++ A+  +MG+ YPEL +    I ET+  
Sbjct: 327 NTGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILETVDL 386

Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  G+ +L+ V+         ++ GD AF L DT+G PLD+ Q I    GL 
Sbjct: 387 EERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT 446

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + + +EEQR R R  +    +   E +W  +      T+F GY  + GS     
Sbjct: 447 -VDEAGYERRMEEQRDRGRRAAQFKRAAEAE-VWAGI--DLPPTRFTGYAAVSGS----- 497

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                              +V+AIV  G+ V EA +GQ+V++  D TPFYAE+GGQ+GDT
Sbjct: 498 ------------------GVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQVGDT 539

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  IG   R+++ DVQ+   G+ VH+ +VE G +     +   +D   R  +  NH+ATH
Sbjct: 540 GVLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNHTATH 599

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG H +Q GS + PD LRFD TH++P+T  +L  IE  VN  I  + PVV 
Sbjct: 600 LLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADTPVVW 659

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-----------------SSALC 694
           + ++ + AI +GA AL G KY D VR+V++   +G                    S  LC
Sbjct: 660 QELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCSRELC 719

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV  +GEI L  I+SESS+ AG+RRIEA+TG  A + +  Q   L+++A+ +   Q 
Sbjct: 720 GGTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVGAPQT 779

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKEL 809
            +V RVE +  E ++ Q    +   ++   +L         + D+ F++  +   ++  L
Sbjct: 780 QLVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPNAARL 839

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGG 868
           + + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ GG G
Sbjct: 840 REMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV-GGSG 897

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGRP MAQ+GG +  K  QA+  VA+ +
Sbjct: 898 GGRPDMAQAGGRDSAKIPQALEHVAAVI 925


>gi|26991160|ref|NP_746585.1| alanyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|37999403|sp|Q88EI8|SYA_PSEPK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24986204|gb|AAN70049.1|AE016644_3 alanyl-tRNA synthetase [Pseudomonas putida KT2440]
          Length = 874

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/897 (42%), Positives = 532/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G     
Sbjct: 417 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDSATEFLGYDATEG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 465 ------------------QGKIIALYKDGQSVDQLGEGEEGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG       R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 507 TGFLQAGAARFDVRDTTK-TGGAFLHHGVVTSGALVIGSPVEAKVDADVQHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV 
Sbjct: 566 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 682 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 802 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 856


>gi|262375452|ref|ZP_06068685.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309706|gb|EEY90836.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 892

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/923 (42%), Positives = 524/923 (56%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT  +   
Sbjct: 61  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNEEWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD GE I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGEHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------------IVNHRVIVDHL 279
           R++ VLQ   +NY+IDLF+HL++A+ ++ G+                    + +V+ DH 
Sbjct: 241 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGLNTTALEAEAAEKGTPVQYPASLKVVADHA 300

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS SFLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPE
Sbjct: 301 RSCSFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLKPLIEVMGDAYPE 360

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L   +  IE  L  E+E+F KTL++GL LL+G L+ L K  ++ G+V FKLYDT+G P D
Sbjct: 361 LAAQQARIEAQLLKEEEQFAKTLEQGLKLLEGELAQL-KGSVIPGEVVFKLYDTYGFPTD 419

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  DI   R L  ID   F   +  QR RAR       +G     + S+ +  G TQF G
Sbjct: 420 LTADIARERDLT-IDEAGFETEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD   G                          + AI + GE V+E   G +  +V +QTP
Sbjct: 473 YDATAG-----------------------EGQIIAIYKDGEQVDEVFEGDEALIVLNQTP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+GDTG    D    ++ D  KK+ G FVH  IV  G L+   ++  T+    
Sbjct: 510 FYAESGGQIGDTGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTMGNLKVTQNVEATVKADI 568

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R   + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L+ IE  V
Sbjct: 569 RAATARNHSATHLLHAALRQILGSHVQQKGSLVASDVLRFDFANDQPVSFEQLQEIERLV 628

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSALCGGTH 698
           N  +  N  V T +++ E A A GA  L G KY D VRV+S+    +    S  LCGG H
Sbjct: 629 NAEVIANTAVSTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSVIEEKNFSIELCGGIH 688

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  I SE  + AG+RRIEA+TG +A       D  +  +   LK  +   + 
Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAVEVAQKADRDINMINGLLKAQKDQTLE 748

Query: 759 RVEEIWEEYRKLQL--IHAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVM 813
           +VE + +    LQ       +KL          ++  +   + +   +  +D+K L+++ 
Sbjct: 749 KVEALVDTASSLQKQIEQLNQKLASLQAGELLSQVQSIAGRATLITTVENMDAKALRNLH 808

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D ++ K+++ +I+L G+  + K S++  V +D      A D+ +  A  L GG GGG+P 
Sbjct: 809 DGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLANEL-GGKGGGKPD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           +AQ G P   K    +A + ++L
Sbjct: 867 LAQGGAPLNEKFAPVMADLTAWL 889


>gi|205830257|sp|A5W0D9|SYA_PSEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/897 (42%), Positives = 532/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G     
Sbjct: 417 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDSATEFLGYDTTEG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 465 ------------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 507 SGFLQAGAARFDVRDTTK-TGGAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV 
Sbjct: 566 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 682 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 802 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 856


>gi|323142770|ref|ZP_08077483.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322417415|gb|EFY08036.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 874

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/910 (41%), Positives = 530/910 (58%), Gaps = 53/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+T+LEFF+KNGHE++ SSSL+P NDPTL+FTN+GM  FK+I+ G+E   Y   
Sbjct: 3   MTTDEIRSTYLEFFRKNGHEVVRSSSLVPYNDPTLLFTNAGMNQFKDIYLGKETRPYLRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGK NDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW LLT+ F L 
Sbjct: 63  TTAQKCVRAGGKQNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIYYAWTLLTEGFKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           +  L +TVY +D EA+ +WK + GL A+KIIRI  N       DNFW M +TGPCGPCSE
Sbjct: 123 KESLTVTVYADDNEAYDIWKNVIGLPAEKIIRIGDNKGGAFNSDNFWQMGDTGPCGPCSE 182

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D       G      E+G+R+IEIWN+VFMQ+ ++       L K  ID G+GLER+
Sbjct: 183 IFYDHGPGVWGGPPGSPEEDGDRFIEIWNIVFMQYNRKADGTFEKLKKPMIDNGLGLERI 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NYDIDLF+ LI  + ++  +        + RVI DH+RS SFLIADG+LP+
Sbjct: 243 AAVLQGVHSNYDIDLFRTLIAKTAEILNVSDLSEK--SLRVISDHIRSCSFLIADGVLPS 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ + RL+G  +     L+  LC  MG AYPELI+ + LIE+TL+ 
Sbjct: 301 NEGRGYVLRRIIRRAVRHGRLMGAKDVFFYKLVGTLCELMGKAYPELIEQRQLIEKTLKK 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F  TLDRGL +LD  L  LG +  + G+V FKLYDT+G P D+ QD++  RG   +
Sbjct: 361 EEEQFLNTLDRGLAMLDSELDKLGANRTIPGEVVFKLYDTYGFPADLTQDVVRDRGYI-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F + + +QR RA++ S      T    +    +    + F GY+ L          
Sbjct: 420 DMDGFEKEMTKQRERAKSAS------TFGIDYNKELKLSDISIFDGYNHL---------- 463

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             + ++ +  E +E A + ++V +V D+T FY E GGQ+GDTG 
Sbjct: 464 -------------SCEGKIVSMFKGSEPIESASTDEEVIIVLDKTTFYGEMGGQIGDTGT 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G  L I +  K      +H   VE G      ++   +D Q R+ ++ +HSATHLL
Sbjct: 511 LRC-GHNLFIVENTKHVGKAIIHVGRVELGQFSVGQTVTAEVDAQRRKDIASHHSATHLL 569

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD LRFD +H  P++  E +++   VN  I +N PV T +
Sbjct: 570 HAALRKVLGDHVFQKGSSVGPDRLRFDFSHPHPLSLDERQAVSALVNKAIRENYPVTTEV 629

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+   A  SGA AL   KY   VRVVS+     G  S  LCGGTHV+ TG++    I+S+
Sbjct: 630 MDLNKAKLSGAMALFDEKYEGEVRVVSM-----GEVSKELCGGTHVARTGDLGYFIIISD 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            SI +GIRRIEA+TG+ A  +       L   ++ L+    +V+ +V+ +    + L+  
Sbjct: 685 ESIASGIRRIEALTGEAAIEYQQHLARMLAYTSTMLQTDNFSVLEKVKGLINNTKSLEHE 744

Query: 774 HAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   K +              +I  +  +   +   +++EL+  +D L+  ++S  I+L 
Sbjct: 745 NMLLKEKIVHMDAKALAYDAVEINGIKIVIAKVDSYNARELRLAVDELKNHLKSCAIVL- 803

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G  + +K S++  +++DL  +  A +L  ++A     G GGGRP MAQ+GG      D+A
Sbjct: 804 GTVEGEKVSLIAALSKDLTSKVKAGELVNVAAS-CVNGKGGGRPDMAQAGGTKPEGLDEA 862

Query: 889 IAGVASFLKK 898
           +    +FL +
Sbjct: 863 LEKARTFLTE 872


>gi|319786629|ref|YP_004146104.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465141|gb|ADV26873.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 882

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/909 (43%), Positives = 547/909 (60%), Gaps = 50/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTARIRSDFLEFFKDKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  + L  
Sbjct: 68  DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIAWAWELLTGVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ +W+   G+   +I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDEAYGIWRDQIGVPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+ +  +TG     N   + RVI DH+R+SSFLI DG+LP+N
Sbjct: 248 AILQHVHSNYEIDLFQALIRKAAALTGTPDLENK--SLRVIADHIRASSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+  L  +MG AYPEL  A+  ++  L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFHQLVDELVAQMGEAYPELPAARDTVQRALKAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V +H     ++ G  AF+LYDT+G PLD+ QDI   RGL  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAAHAA-GAVIPGVDAFRLYDTYGFPLDLTQDIARERGLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+E+QR  ARA       G   ++   L      T F+GYD L           
Sbjct: 424 VAGFEAAMEQQRETARAAGKF---GGGVQLPAELVATLEPTVFLGYDALEAEGM------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G  V+   SG++  V+ D+TPFYAE+GGQ+GDTG  
Sbjct: 475 ----------------KVVALLHDGRPVDSVASGEEAIVLLDRTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G +LQ+ D QK A     H   V  G L+T   L   +D + RR + +NHSATHLLH
Sbjct: 519 EGEGAKLQVGDTQKFAGQFHGHFVRVAEGGLKTGQLLRGAVDGERRRAIVLNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +P+ + E+  IE  VND +  N  VV + M
Sbjct: 579 GALRGLLGTHVQQKGSLVAPDRLRFDFSHFQPVNAEEVARIERMVNDEVRANHAVVIQQM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY +RVRVV +        S  LCGGTHV+ TG+I L  IVSE 
Sbjct: 639 GIQEALDLGAMALFGEKYGERVRVVKMG------ESVELCGGTHVARTGDIGLFKIVSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  H+  +   L   AS L  S+G VV R   + E  RKL+   
Sbjct: 693 GVSAGVRRIEALTGQAALEHIAAEGRALDEAASLLGGSRGEVVERARAVAERIRKLEREL 752

Query: 775 AKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +      +        ++ +  ++  +  +D+K L+  +D L++++   +++L G
Sbjct: 753 ESIKAKAASSAAADLAGSAVDVSGIKVLAARLEGIDAKGLREAVDRLKQQLGDTVVLLAG 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            ++  K +++  V      +  A +L    A  +GG GG GRP +AQ GG +G     A+
Sbjct: 813 -AQGGKVALVAGVNGAATGKVKAGELLAHVAGRIGGKGG-GRPDLAQGGGEDGPALAPAL 870

Query: 890 AGVASFLKK 898
           A V +++ +
Sbjct: 871 ADVPAWVAE 879


>gi|313497736|gb|ADR59102.1| AlaS [Pseudomonas putida BIRD-1]
          Length = 874

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/897 (42%), Positives = 532/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G     
Sbjct: 417 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDSATEFLGYDATEG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 465 ------------------QGKIIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 507 SGFLQAGAARFDVRDTTK-TGGAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  I +N PV 
Sbjct: 566 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 682 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 802 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 856


>gi|255021551|ref|ZP_05293594.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254968939|gb|EET26458.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 880

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/907 (41%), Positives = 545/907 (60%), Gaps = 41/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FF   GHE++PSS L+P NDPTL+FTN+GMVPFK+ F G E+  Y+ 
Sbjct: 1   MRSQA-IRQAFLDFFAARGHEIVPSSPLVPRNDPTLLFTNAGMVPFKDTFLGLEQRPYRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK   I  AW  LT+   L
Sbjct: 60  AVSAQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGYAWTFLTEVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              RL++TV+ ED EA  +W +  G+   +  R    DNFWSM +TGPCGPCSEIF+D  
Sbjct: 120 PPERLWVTVFAEDREAEDIWLREMGIDPARFSRCGEKDNFWSMGDTGPCGPCSEIFYDHG 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G       +G+RYIEIWNLVFMQ+++ +      LPK S+DTGMGLER+A VLQ 
Sbjct: 180 PEIPGGPPGSPDADGDRYIEIWNLVFMQYDRDSSGRLTPLPKPSVDTGMGLERLAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             NNYD DLF+ LIQA+  ++G  Y  +     + RV+ DH+R+ SFL+ADG+LP+NEGR
Sbjct: 240 VHNNYDTDLFQPLIQAAADISGKVYGADPAADTSLRVLADHVRACSFLMADGVLPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + R LG  +     L+P L + MG AYPEL +A+  I+  LR E+ R
Sbjct: 300 GYVLRRIIRRAVRHGRKLGLGDIFFHRLVPPLVSVMGEAYPELRRAERDIQGHLRREEAR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL+RGL LL+  +  L     + G+V F+L DT+G P+D+  DI   RGLA +D+  
Sbjct: 360 FRETLERGLELLEEAIGGLAPGAPIPGEVIFRLSDTYGFPVDLTADIARERGLA-LDMPG 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  AL EQR R+RA  +G G    ++++  L  +  AT+F+GY    G            
Sbjct: 419 FEAALAEQRQRSRAAWVGSGEVKADRLYHDLAMELPATEFLGYGGCSG------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-G 536
                      +  V A+++ G+ V+   +G+   V+ DQTPFY E+GGQ+GD G     
Sbjct: 467 -----------AGRVLALIRDGQRVDVLRAGETGSVILDQTPFYGESGGQVGDRGLLTDA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+R  + D QK    + +H   VE G LR    +   +D   R   + +HSATHLLH A
Sbjct: 516 AGLRFVVQDTQKPVASLHLHLGRVESGELRLGHIVHAEVDSDARAATAAHHSATHLLHAA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L T+LGSHV Q GS +TP+ LRFD +H +P+T A+L+S+E+ VN  +  N+    +++  
Sbjct: 576 LRTLLGSHVQQKGSLVTPERLRFDFSHPEPLTLAQLQSLENWVNAAVRANVVADVQVLPI 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             A + GA AL G KY + VRV+ +     G +S   CGGTHV +TG+I    I++ES +
Sbjct: 636 AQAQSLGALALFGEKYGEEVRVLRL-----GDYSLEFCGGTHVQATGDIGCFKILAESGV 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AGIRRIEA  G  A + +   +++L++ A+ L V+   +  R+ +  E  R+L+    +
Sbjct: 691 AAGIRRIEAAAGAAAIAAVQLDEQRLRAAAALLHVAPAELDQRLAQTLERQRQLEKELER 750

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L  +           IA V  +   I  +D K L+ ++D L+ +I  GI++L G+ 
Sbjct: 751 LRQKLAAQAGERLASAVEDIAGVPVLVQQIDGMDGKGLRELVDRLRSQIPHGILLLAGVQ 810

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K +++  V+++L DR  A  L    A+V+ GG GGGR  +AQ+G  +  +   A A 
Sbjct: 811 ND-KVALIAAVSKELTDRVAAGPLVHAVAEVM-GGKGGGRADLAQAGAEHPEQLTAAFAL 868

Query: 892 VASFLKK 898
             ++L++
Sbjct: 869 ARAWLEQ 875


>gi|258404449|ref|YP_003197191.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796676|gb|ACV67613.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 880

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/907 (40%), Positives = 535/907 (58%), Gaps = 41/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F + GHE++ SS L+P +DP+L+FTN+GMV FK +F GQ+K  Y  
Sbjct: 1   MVTAAEIRQRFLEYFARQGHEIVKSSPLVPKDDPSLLFTNAGMVQFKKVFLGQDKRNYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  A+  AW  LT+E  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAVDFAWRFLTEELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY +VY ED+EA++LWK+I+GL  ++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKDRLYASVYREDDEAYELWKEIAGLPDERIYRLGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        E +R++EIWNLVFMQF++        LP+ SIDTGMGLER+A V Q
Sbjct: 181 SHMSCGPECEIGVCECDRFLEIWNLVFMQFDRDASGTMTPLPQPSIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  LI+ + +  G+ Y  +  +N   RVI DH R+ +F++ADGILP+NEG
Sbjct: 241 GVYSNFDTDLFSGLIRTTAERAGVVYGKDEEINTALRVIGDHSRAVAFMLADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G  +P +  +   + +EMG  YPEL +    + + +R E+E
Sbjct: 301 RGYVLRRLIRRAFRFGRLIGLRDPFLFDVCSQVVSEMGDDYPELHETAAFMVKVVRQEEE 360

Query: 357 RFGKTLDRG--LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+G  L+  +           + G VAFKLYDT G P+DI+ D+  ARG   +D
Sbjct: 361 RFGTTLDKGLALLEEELESLQGAGQTQVPGGVAFKLYDTFGFPIDIVNDVAEARGFT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + ++ Q+ R++A   G G+      + +L E    + F+GY+ L+          
Sbjct: 420 EAGFQEHMQAQKERSKAAWSGSGATDMAARFVALLEAGVQSDFVGYETLQ---------- 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S I   +   G+ V+E  +G+   +V  +TPFY E+GGQ+GD+G  
Sbjct: 470 ------------STSRIAALLKDDGQEVQELAAGENGYLVTARTPFYGESGGQVGDSGRV 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           IG      + D  K A  + VH   V++G L  +    L +D   R   + NH+ THLLH
Sbjct: 518 IGPRGDGAVLDTIKPAAQLTVHSITVKQGSLAVDDEAELIVDEGERVATARNHTVTHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  D LRFD+TH + +T+ E++++ED VN  I  + PV +  M
Sbjct: 578 AALREVLGEHVKQAGSLVASDRLRFDLTHIQALTAEEIQAVEDKVNQSILADTPVESAHM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A+  GA AL G KY D VRV+ +        S  LCGGTH+ +TG+     I+SE+
Sbjct: 638 DYSQAVQGGAVALFGEKYEDEVRVIDIPG-----VSRELCGGTHLRATGQAGFFCILSEA 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ AG+RRIEA TG +A      Q  +L+  A  LK  Q  + GR++++ E+ + L+   
Sbjct: 693 AVSAGVRRIEAATGWQAVRTFTEQRTRLREAAQLLKAPQTEITGRIQDLQEQLKSLRKEK 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + QL             ++  +  ++  +   D K L+ +MD ++ K+ SG+++L  
Sbjct: 753 EALEGQLQSAKGGDLMSQVEELGGIPVLTAEVEAPDVKTLRGMMDDVRSKLSSGVVLLAA 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +E KA +++ V++DL DRF A  L +  A+ + GG GGGRP +AQ+GG N      A+
Sbjct: 813 -KQEAKAMLILFVSQDLHDRFTAPGLIKQVAQEI-GGSGGGRPDVAQAGGGNPEGIPAAL 870

Query: 890 AGVASFL 896
             + + +
Sbjct: 871 DSLRNLV 877


>gi|262369620|ref|ZP_06062948.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262315688|gb|EEY96727.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 892

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/924 (42%), Positives = 527/924 (57%), Gaps = 62/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+  GH  + SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIREAFLSYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
            + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+ AWD LT      
Sbjct: 61  VSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTGEAWLA 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +LY TVY  D+EAF +W K  GL A +IIRI  N       DNFW+M +TGPCGPC
Sbjct: 121 LPKDKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GGLPG   E+G+R+IEIWN VFMQF +        LP  S+DTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------------IVNHRVIVDHL 279
           R++ VLQ   +NY+IDLF+HL++A+ ++ G+                    + +V+ DH 
Sbjct: 241 RISAVLQHVNSNYEIDLFQHLLKAAAEIIGLDTAALEAEAREKGTPVQYPASLKVVADHA 300

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS SFLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   MG AYPE
Sbjct: 301 RSCSFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLQPLIEVMGQAYPE 360

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L   K  IE  L  E+E+F KTL++GL LL+G L+ L K  ++ G+V FKLYDT+G P D
Sbjct: 361 LEAQKARIEAQLLKEEEQFAKTLEQGLKLLEGELAQL-KGSVIPGEVVFKLYDTYGFPTD 419

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  DI   R L  ID   F   +  QR RAR       +G     + S+ +  G TQF G
Sbjct: 420 LTADIARERDLT-IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD   G                          + AI + GE V+E V G +  +V +QTP
Sbjct: 473 YDATVG-----------------------EGQIIAIYKDGEQVDEVVEGDEALIVLNQTP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+GDTG    D    ++ D  KK+ G FVH  IV  G ++   ++  T+    
Sbjct: 510 FYAESGGQIGDTGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTVGSIKLAQNVEATVKADI 568

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R   + NHSATHLLH AL  ILG HV Q GS +  D LRFD  + +P++  +L+ IE  V
Sbjct: 569 RAATARNHSATHLLHAALRQILGEHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLV 628

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTH 698
           N  +  N  V T +++ E A A GA  L G KY D VRV+S+    +    S  LCGG H
Sbjct: 629 NAEVIANSAVTTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSIIEEKNFSIELCGGIH 688

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I L  I SE  + AG+RRIEA+TG +A       D  + ++   LK  +   + 
Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAIEVTQKADRDINTINGLLKAQKDQTLE 748

Query: 759 RVEEIWEE----YRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVM 813
           +VE + +      ++++ ++ K       E L     +A    +   +  +D+K L+++ 
Sbjct: 749 KVEALVDTASSLQKQIEQLNQKLASFQAAELLSQVQTLAGRQTLITTVQNMDAKSLRNLH 808

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D ++ K+++ +I+L G+  + K S++  V +D      A D+ +  A  L GG GGG+P 
Sbjct: 809 DGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLATEL-GGKGGGKPD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ G P   K    +A + ++L+
Sbjct: 867 LAQGGAPLNEKFATVMADLTAWLE 890


>gi|254292635|ref|YP_003058658.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254041166|gb|ACT57961.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 897

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/908 (48%), Positives = 590/908 (64%), Gaps = 37/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++V+ +R+ FLE+F  NGHE++ S+ L+P   D TL+F N+GMVPFKN+FTG E P +  
Sbjct: 14  NSVNGVRSQFLEYFNSNGHEVVQSAPLVPQGGDSTLLFVNAGMVPFKNLFTGAETPAFLK 73

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+++TK F L
Sbjct: 74  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIVHAWNVVTKVFGL 133

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L +TV+ ED+EA  LWKKI+GLS DKIIRI+T+DNFWSM +TGPCGPCSEIF+D G
Sbjct: 134 PVDKLVVTVFSEDDEAAMLWKKIAGLSDDKIIRISTSDNFWSMGDTGPCGPCSEIFYDHG 193

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS E +G+R+IEIWNLVFMQF+Q     R  LPK SIDTGMGLER+A VLQ 
Sbjct: 194 PDVWGGPPGSPEEDGDRFIEIWNLVFMQFDQSKDGSRVSLPKPSIDTGMGLERIAAVLQG 253

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNY+IDLF++LI A E V G+K     + + RVI DHLRSS+FLIADG+ P+NEGRGY
Sbjct: 254 VHNNYEIDLFQNLIAAEEDVYGLKQSEKTLGSLRVISDHLRSSAFLIADGVTPSNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  EP M  L+PAL  EMG A+PEL +A+  I  TL  E+ RF 
Sbjct: 314 VLRRIMRRAMRHGHLLGSKEPQMHKLVPALVAEMGVAFPELGRAQASIVSTLEQEEGRFQ 373

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RGL LL+   S +GK ++L G+ AFKLYDT G P+D+ QD+L A+G+  +D + F 
Sbjct: 374 RTLGRGLALLEDATSSMGKGDVLPGETAFKLYDTFGFPVDLTQDVLRAKGIE-VDEVGFE 432

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++ QR  ++A   G   G   K+WF  ++ +GAT+FIGY                   
Sbjct: 433 KAMKVQRESSQASWQGAAEGDAVKVWFQTRDAHGATEFIGYSE----------------- 475

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538
                     + +K I+  GE+   A  GQK E+VFD+TPFY E+GGQ GD G      G
Sbjct: 476 ------EASEAELKTIIIDGELATTANEGQKAELVFDKTPFYGESGGQAGDRGEVRFAGG 529

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D QK+A  +F H   +  G ++  +  +L +D   R  +  NHSATH+LH AL 
Sbjct: 530 AVFRVLDTQKRAGDVFSHIGEMVTGDIKAGVKALLEVDSVRRSNIRSNHSATHILHAALR 589

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +  D LRFD  HS  ++  EL  IE  VN +I QN  V T+ M  + 
Sbjct: 590 NNLGDHVTQKGSLVEEDKLRFDFAHSGTLSQVELDKIEAEVNAVIRQNSEVSTKEMAPDA 649

Query: 659 AIASGAAALLGTKYNDRVRVVSV-EYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESS 715
           AI +GA AL G KY D VRV+++ E  +GG   +S  LCGG HV  TG+I +  I SES 
Sbjct: 650 AIEAGAMALFGEKYGDSVRVLAMGEALEGGDKAYSVELCGGIHVRRTGDIAVFAITSESG 709

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AG+RRIEA+TG  A  +L G+    +S+A  LK +      RV  + ++ R L  +L 
Sbjct: 710 VSAGVRRIEAVTGAAALEYLKGKVAIARSIADQLKSTIEKAPERVAALQDQKRALENELS 769

Query: 774 HAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            AK+KL +            +I  +  ++ +   V +K+L+ ++D  +K++ SG+ + V 
Sbjct: 770 DAKKKLAMGASAGGAAAGPEEINGIKLLTRVADGVPAKDLRGLIDDAKKQLGSGVTVFVA 829

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + KA+V   VT+DL D+ +AVDL +++A  +GG GGGGRP MAQ+GGP+G+KA+ A+
Sbjct: 830 V-NDGKAAVATGVTDDLKDKISAVDLVKVAAAAVGGKGGGGRPDMAQAGGPDGSKANDAV 888

Query: 890 AGVASFLK 897
             V +FLK
Sbjct: 889 DAVRAFLK 896


>gi|194365256|ref|YP_002027866.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|194348060|gb|ACF51183.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 882

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/893 (43%), Positives = 541/893 (60%), Gaps = 49/893 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGIPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG     N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAADTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA     G  T   +   L      T+F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAGKFGGGVT---LPAELVATLSPTRFLGYDRLQADGL------ 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 475 ----------------TVLAVLKDGRPVQSANAGDAVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H  I+  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGILSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGTHVQQKGSMVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  ++  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAADLLGGSAADVVEKIRALGQRQKQLEREL 753

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K ++             ++A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 ESVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++ KA+++  V    + +  A +L    A  +GG GG GRP +AQ GG +G
Sbjct: 814 -AQDGKAALVAGVNGSAMGKVKAGELLSHIAGQIGGKGG-GRPDLAQGGGEDG 864


>gi|296135261|ref|YP_003642503.1| alanyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795383|gb|ADG30173.1| alanyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 917

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/953 (39%), Positives = 534/953 (56%), Gaps = 96/953 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            NVS IR  FL +F+  G   + SSSL+P NDPTL+FTNSGMV FK++F GQ++  Y+  
Sbjct: 1   MNVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQER----------------- 216
           IF+D G  + GG PGS E +G+RYIEIWNLVFMQFE+    E                  
Sbjct: 181 IFYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFETEDQATARKQAVEA 240

Query: 217 ---------------------FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
                                  LPK  +DTGMGLER+A VLQ   +NY+IDLF+ LI+A
Sbjct: 241 EGGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKA 300

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
           + + T     G+   + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ +   L
Sbjct: 301 AARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKL 358

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  +P    ++P L  +MG+AYPEL +A+  + E L++E+ RF +T++ G+ +LD  L+ 
Sbjct: 359 GVRQPFFYKMVPDLVAQMGAAYPELAEAQGRVAEVLQAEEARFFETIEHGMGVLDTELAA 418

Query: 376 LG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           L      +L G++AFKL+DT G PLD+ QD+    G+  +D  +F+ A+  QR +ARA  
Sbjct: 419 LRAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDVAMARQREQARAAG 477

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                    K+  +L      T+F GY+ L                          + V 
Sbjct: 478 K-------FKMQAALDYVGDKTRFDGYEHL----------------------LVKEARVV 508

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGD--GIRLQITDVQKKA 550
           A+ + G  V    +G    VV D+TPFYAE+GGQ+GD+G    GD   +R  + D QK  
Sbjct: 509 ALYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCDLRFVVHDTQKLQ 568

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +F HH  +E G L+    +   +D + R  +  NHS THL+H AL  +LG HV Q GS
Sbjct: 569 ADVFGHHGTLESGSLKVGEIVAAQVDGERRLAVMRNHSVTHLMHKALRLVLGDHVQQKGS 628

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +  D  RFD  H  P++  E+  +E  VN+ I  N     R+M  ++A   GA  L G 
Sbjct: 629 LVDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGMGAMMLFGE 688

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           KY D VRV+ +        S  LCGGTHV+ TG+I L  IV E  + AGIRR+EA+TG  
Sbjct: 689 KYGDTVRVLDIG------TSRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAVTGLN 742

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED----- 785
           A + +  Q+  +  L+  LK        +VE++ E+ R+L+    + K Q          
Sbjct: 743 ALAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLTQLKAQQAAAQGDALV 802

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                I   + +   +  +D+K L+  +D ++ K+++ +++L     + K  +   V+ D
Sbjct: 803 SQAFTIGGTSVLLARMDGLDAKGLREAVDRIKSKLKTAVVLLASREGD-KVQLAAGVSAD 861

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + +  A DL  ++A+ + GG GGGRP  A +GG    + D A+A   S L++
Sbjct: 862 RVGQIKAGDLVSVAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913


>gi|294677289|ref|YP_003577904.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476109|gb|ADE85497.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 884

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/892 (48%), Positives = 572/892 (64%), Gaps = 41/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL FF+KNGH ++ SS L+P NDPTLMFTNSGMV FKN FTG EK  Y  
Sbjct: 1   MPSLNDIRSTFLAFFEKNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTK+FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEKAITYAWELLTKDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L +TVY  D+EA  +WKK+SGL+ ++IIRI T DNFW M  TGPCGPC+EIFFD G
Sbjct: 121 PKSKLLVTVYHTDDEAAAIWKKVSGLTDERIIRIPTKDNFWQMGPTGPCGPCTEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN VFMQ EQ        L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSKDEDGDRFIEIWNNVFMQNEQFEDGSMVELEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G   V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 241 KHDNYDTDLMRSLIEASAHATSADPDGAGKVHHRVIADHLRSTSFLIADGVMPSNDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  +A +LG  +P+M  L+PAL  +MG+AYPEL++A+ LIEETL+ E+ RF 
Sbjct: 301 VLRRILRRAARHAHMLGAKDPVMHKLVPALVRQMGAAYPELVRAQALIEETLKLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL+RGL LLD  L+ L +   L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 VTLERGLKLLDDELAALPEGAELPGPAAFKLYDTYGFPLDLTQDALREKGRT-VDTAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQ+++ARA   G G  T  K+WF + E+ G T+F+GYD                  
Sbjct: 420 AAMEEQKAKARASWSGSGEATDAKLWFEIAERAGVTEFLGYDT----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       ++A+V +G  V EA     V++V +QTPFYAE+GGQ+GD G    D  
Sbjct: 463 ------ETAEGQIQALVIEGAEVTEATGA--VQIVVNQTPFYAESGGQVGDHGIIRTDSA 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++ITD  KK  G+F+H   V  G +       L +D+  R  +  NHSATHLLH AL  
Sbjct: 515 EIRITDT-KKVAGVFIHIGEVVEGKVTRGQPAKLEVDHARRSAIRANHSATHLLHEALRR 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS    D LRFD +H K +T+ EL ++E  VN  I QN PV TRIM  +DA
Sbjct: 574 ALGDHVAQKGSLNAEDRLRFDFSHGKAMTAEELMTVEAEVNAFIRQNTPVETRIMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+          DG  +S  LCGGTHV  TG+I     + 
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGELLGSGKGHDGRTYSLELCGGTHVKRTGDIGAFVALG 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES+  AG+RR EA+TGQ A   L  Q+ +L  +A  LK S   V  RV+ + EE + L  
Sbjct: 694 ESASSAGVRRFEALTGQAALDWLKAQNARLAEVAGLLKTSPAEVADRVKALAEERKALAN 753

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++   +R+L +        ++ ++    F++ ++S V  K+L +++D L+ K+ SG +++
Sbjct: 754 EVAQLRRELAMGGGAAGGQEVIEIKGLRFIAQVVSGVSGKDLPALVDGLKDKVGSGAVLV 813

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           V      KA+    VT D     +AV++ +++A  LGG GGGGRP MAQ+GG
Sbjct: 814 VA-DTGGKAACAAGVTADKTGTVSAVEIVKIAAAALGGKGGGGRPDMAQAGG 864


>gi|153006742|ref|YP_001381067.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|205829977|sp|A7HH87|SYA_ANADF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152030315|gb|ABS28083.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 904

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/933 (40%), Positives = 534/933 (57%), Gaps = 73/933 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL FF++  H  +PSSSL+P NDPTL+FTN+GM  FK++FTG+EK  Y  
Sbjct: 1   MKTAAQIRELFLRFFEEKAHRRVPSSSLVPQNDPTLLFTNAGMNQFKDVFTGREKRDYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+L+T     
Sbjct: 61  ATTAQKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTSERWL 120

Query: 119 DLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + + RL  TV+        DEEA++LW +  G+  ++I ++   DNFW+M +TGPCGPC
Sbjct: 121 AISKERLAATVFAGEGTLPWDEEAYRLW-EAQGVPPERIHKLGAKDNFWAMGDTGPCGPC 179

Query: 173 SEIFFDQGECIPGGLP-------GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           SE+ F QG  IP           G + + +R++EIWNLVFMQFE+        LPK SID
Sbjct: 180 SELHFFQGNDIPCAEEKAGRTCQGVACDCDRWLEIWNLVFMQFERGADGGLTPLPKPSID 239

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSS 282
           TG GLERMA V+Q K +NYDID F+ +I+A E++ G +Y   + ++ V+ RVI DH R++
Sbjct: 240 TGAGLERMAAVVQGKRSNYDIDAFQSIIRAIEKLAGKRYGATDADDDVSMRVIADHARAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +FL+ DG+LPANEGRGYVLRRIMRRA+ + + LG   P +  +  A+  EMG AYPE  +
Sbjct: 300 TFLVGDGVLPANEGRGYVLRRIMRRAIRHGKRLGLERPFLADVCEAVMEEMGGAYPETRE 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL----------------GKDEILNGDV 386
            +  I +    E+E F +TLD+GL +L+  +                       +++G +
Sbjct: 360 NRAFIVKVAGQEEESFRRTLDKGLAILETEMRKAIPPETHLGKPATPPPSAPRPVIDGKL 419

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT G PLD+ + I   RG   +D   F++ + EQ  RAR+   G G      +  
Sbjct: 420 AFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRNMAEQ--RARSEWKGSGEQAVGDLHK 476

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
            +  + G T+F+GY+                            + VKA++  G    +A 
Sbjct: 477 QIASELGETRFLGYEAP-----------------------TARAEVKALLANGARAAKAA 513

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G KVEVV   TPFY E+GGQ+GD G     G R+++ D ++   G+  H  +VE G L 
Sbjct: 514 RGDKVEVVTAATPFYGESGGQVGDQGSIAAPGGRVRVEDTRRPVPGLVTHVGVVEEGELA 573

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D + R  +  NHSATHLL  AL   LG HV Q GS + PD LRFD +H +P
Sbjct: 574 VGDLVELAVDDRRRDLIRANHSATHLLQLALRETLGDHVKQAGSIVAPDYLRFDFSHFQP 633

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++  EL +IE  VN+++ +N    T ++  EDA  SGA  + G KY D VRVV +     
Sbjct: 634 LSEEELNAIERRVNELVRENAETETAVLKLEDARQSGAMMIFGEKYGDVVRVVRLGP--- 690

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S  LCGGTHV  TG+I    I SE SI AG+RRI A TG +A      + ++L+  A
Sbjct: 691 ---SKELCGGTHVRRTGDIAFFKIGSEESIAAGVRRIVAYTGPQAIELSQREADELRRAA 747

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           +  K     V  ++E+  +  + L+  L  AK K+          +  DV     +   V
Sbjct: 748 ALFKAGAFEVAQKIEQTQKRVKDLERALDEAKGKIASAQSGDLAAQARDVKGAKVLAVRV 807

Query: 805 --DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
             D K L+ + D L+ ++ +G++ L G  ++ KA +L+ VT+DL  R  A +L + +AK+
Sbjct: 808 QGDGKSLRELADKLRDRLGTGVVAL-GAEQDGKAILLVAVTKDLTARLKAGELVKEAAKL 866

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           + GG GGG+P +AQ+GG +    ++A+A V   
Sbjct: 867 V-GGSGGGKPDLAQAGGSDPAGLEKALAKVQEL 898


>gi|225023233|ref|ZP_03712425.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC
           23834]
 gi|224944057|gb|EEG25266.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC
           23834]
          Length = 873

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/912 (39%), Positives = 526/912 (57%), Gaps = 56/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS E +G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +V+ DH+RS SFLIADG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVVADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ RF +TL+ G+ LL+  L+       L+G++ FKLYDT+G P D+  DI   R + 
Sbjct: 360 KNEESRFAQTLETGMALLENALT--KGSNKLDGEIIFKLYDTYGFPYDLTADICRERNI- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   FN+ +E       A      +    K    L      T+F GY+          
Sbjct: 417 NLDEDGFNREME-------AQRARARAAQNFKANAQLDYTGADTEFTGYE---------- 459

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + + A+ +  E V+E   G+   VV +QTPFYAE+GGQ+GD 
Sbjct: 460 -------------KRSQDTKIIALYKGSEAVDELQVGEAGVVVLEQTPFYAESGGQVGDV 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R ++ D QK    +      V  G L+   ++   ID   R  +  NHS TH
Sbjct: 507 GFIFAGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDNIMRNHSVTH 566

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LG+HV Q GS    +  RFD++H + I + E+  +E  VN  I  N+PV  
Sbjct: 567 LMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGINAEEIAEVERRVNAAIIANVPVKV 626

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I    I+
Sbjct: 627 ETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKII 681

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE  I AGIRR+EAITG  A +    Q+  +K++ + +K   + +V+ +++      + L
Sbjct: 682 SEGGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKAL 741

Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           +   AK K +L      + L   K      +     E D+  L+ ++  L  K  + +I+
Sbjct: 742 EKELAKAKAELAVHAGAKLLDNAKDLGAAKLVAAQIEADAAALREIVTDLTGKSDNAVIL 801

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG + ++  
Sbjct: 802 LAAV-NDGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQVG 859

Query: 887 QAIAGVASFLKK 898
             +     ++++
Sbjct: 860 TMLDSAEGWVRE 871


>gi|302877754|ref|YP_003846318.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302580543|gb|ADL54554.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 873

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/912 (41%), Positives = 529/912 (58%), Gaps = 57/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL+FF   GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-SEIRQQFLDFFASKGHAIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L
Sbjct: 60  AASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWELLTEVFKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + RLY+TVY ED+EA+ +W K  GL A ++IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKERLYVTVYAEDDEAYDIWTKEMGLEASRVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GGLPG   E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 180 EIFYDHGEHISGGLPGTPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ    NY+IDLF+ LI A+ + T       +  + +V+ DH+R+ SFLIADG++P
Sbjct: 240 ISAVLQHVHANYEIDLFQALINAAARETNC--SDMDSPSLKVLADHIRACSFLIADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRG+VLRRI+RRA+ +   LG  E     L+P L  +MG AYPEL  A+  ++  L+
Sbjct: 298 GNEGRGFVLRRIIRRAIRHGYKLGAREAFFYKLVPDLVAQMGVAYPELTAAQDRVKGVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ERF  T++ G+ +L+  L  + +  + + NG+ AFKL+DT G P+D+  D+    G+
Sbjct: 358 LEEERFFATIENGMAILEADLLAMKQAGNTVFNGETAFKLHDTFGFPVDLTADVCREHGV 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+ +F+ A                +    K+  +L+ +  AT F GY+ L       
Sbjct: 418 T-VDVAAFDAA-------MAQQKQQARAAGKFKMAANLEYEGPATLFHGYETLEH----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +  V A+ + G  V E   G    VV D TPFYAE+GGQ GD
Sbjct: 465 ------------------AGCVLALYKDGVSVGELNEGDTGVVVLDNTPFYAESGGQTGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G      + D QK    +F HH +++ G L     +   ++   RR    NHS T
Sbjct: 507 SGELRGSHGIFAVEDTQKIQAAVFGHHGVLKTGKLLVGNGVQARVNMAARRATERNHSVT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG+HV Q GS +  D  RFD  HS+P+T +E+  +E  VN  I  N    
Sbjct: 567 HLMHKALREVLGAHVQQKGSQVDADKTRFDFVHSQPVTDSEVLRVEFIVNAEILSNAASQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +R+M  EDA  +GA  L G KY D VRV+++        S  LCGGTHV+ TG+I L  I
Sbjct: 627 SRVMGIEDAQQTGAMMLFGEKYGDEVRVLNIGS------SIELCGGTHVARTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSES + AG+RRIEA+TG+ A   +  Q  +L+++A  +K       GR+ ++ +  + L
Sbjct: 681 VSESGVAAGVRRIEAVTGEGALDLIQMQQRQLRAVADAVKAQPHEAAGRIAQLLDHQKSL 740

Query: 771 QLI--HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      K KL     D        I  V  ++ ++   D+  L+  +D L+ K++S +I
Sbjct: 741 EKELTALKSKLASAQGDELVAQAQDINGVKVLAALLPGADAAILRETLDKLKDKLKSAVI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  ++ + K +++  VT D   +  A +L  ++A+ + GG GGGRP MAQ+GG      
Sbjct: 801 LLASVT-DGKVALIAGVTADQTAKVKAGELVNMAAQKV-GGKGGGRPDMAQAGGTQPEHL 858

Query: 886 DQAIAGVASFLK 897
             A+A V  +++
Sbjct: 859 AAALASVTDWVR 870


>gi|145589899|ref|YP_001156496.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|205830176|sp|A4SZL8|SYA_POLSQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145048305|gb|ABP34932.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 874

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/911 (43%), Positives = 543/911 (59%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR  +L+FF + GH+++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKVTQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRSYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F+L 
Sbjct: 61  TTAQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQVFELP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EA+ +WK   G+ A++IIRI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLLVTVYAEDDEAYAIWKDQIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D GE IPGG PGS  E+G+R+IEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           A VLQ   +NY+IDLF +LI+A++      G +       + +VI DH+R+ SF++ DG+
Sbjct: 241 AAVLQHVHSNYEIDLFVNLIKAAKDTVDGAGGENCDAQSPSLKVIADHIRACSFIVVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P N GRGYVLRRI RRA+ +   LG  +P    L+PAL  EMG AYPEL  A+  + E 
Sbjct: 301 IPGNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMGDAYPELRAAQDKVSEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ERF +T+  G+ +LDG L+  G  ++++G+ AF+L+DT G PLD+  D+   RG+
Sbjct: 361 LKQEEERFFQTIANGMEILDGALA--GGAKVVDGETAFRLHDTFGFPLDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F  A+++QR +ARA           K+   L  K   T+F GY+ L+      
Sbjct: 419 T-VDSEGFEVAMQKQRDQARAAGK-------FKVAQGLDYKGVPTRFHGYETLKHEG--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+   G  V    +G    VV D TPFYAE+GGQ+GD
Sbjct: 468 -------------------AKITALYLDGSAVNSVKAGDAAVVVLDNTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +  R  + D  K    +F H   V  G L+   +L   +D   R     NHSAT
Sbjct: 509 KGELRNEAARFTVDDTFKIQADVFGHQGEVLEGELKVGDTLNALVDIALRNDTMRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +     RFD TH+ PIT+ +++ IED VN  I  N    
Sbjct: 569 HILHKALREVLGDHVQQKGSLVDASKTRFDFTHNAPITAEQIRRIEDIVNAEILDNSATS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M+ EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I  L I
Sbjct: 629 GKVMSLEDAQKTGAMMLFGEKYGDEVRVLEIGS------SKELCGGTHVSRTGDIGSLKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768
           VSE  + AGIRR+EA+TGQ A   L G ++K+   A+ LK   G++V RV ++ E  R  
Sbjct: 683 VSEGGVAAGIRRVEAVTGQNALHFLQGLEDKINEAATILKTHPGDLVNRVAQLQESLRLA 742

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGII 825
           + +L     KL  +  D    +  DVN +  +   +   D+  L+  MDAL+ K+++  I
Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGLKVLAARLDGADAGVLRETMDALKAKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  VT D + +  A DL    A+ +GG GG G+P MA +GG + +K 
Sbjct: 803 VLASVQGD-KVSLIAGVTADSIAKVKAGDLVNFVAQQVGGKGG-GKPEMAMAGGNDPSKL 860

Query: 886 DQAIAGVASFL 896
             A+ GV  ++
Sbjct: 861 GAALDGVKDWV 871


>gi|89092119|ref|ZP_01165074.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89083854|gb|EAR63071.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 854

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/902 (42%), Positives = 526/902 (58%), Gaps = 60/902 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLEFF++ GHE++ SSSLIP NDPTLMFTN+GMV FK++F G +K  Y   
Sbjct: 4   MTSAEIRQAFLEFFKQQGHEIVASSSLIPANDPTLMFTNAGMVQFKDVFLGTDKRNYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT+   L 
Sbjct: 64  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWTFLTETLGLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++TV+  D+EA ++WK+  G+  ++  ++   DNFWSM +TGPCGPC+EIFFD G 
Sbjct: 124 KERLWVTVHHSDDEAERIWKEEIGVDPERFSKL-DEDNFWSMGDTGPCGPCTEIFFDHGA 182

Query: 182 CIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+RYIEIWN+VFMQ+ +    E   LPK S+DTGMGLER+A V+Q  
Sbjct: 183 DVWGGPPGSPEEDGDRYIEIWNVVFMQYNRSADGEMTPLPKPSVDTGMGLERIAAVMQNV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ID+F++L++A+    G     N   + RVI DH+RS SFLI DG+LP+NEG GYV
Sbjct: 243 HSNYEIDMFQNLLKATAAAVGTTDMDNK--SLRVIADHIRSCSFLIVDGVLPSNEGAGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P    L+ AL  EMG AYPEL + +  +E  L  E+E+F K
Sbjct: 301 LRRIIRRAVRHGNKLGAKGPFFNQLVEALVKEMGEAYPELAEKQSQVERVLLKEEEQFAK 360

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD G+ LL   +  L    ++ G+  FKLYDT+G P D+  D+     L  ID   F +
Sbjct: 361 TLDHGMRLLHEAIEGL-DGTVIPGETVFKLYDTYGFPHDLTADVAREHELT-IDEEGFER 418

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E QR RARA       G     +    +  G T F GY+LL                 
Sbjct: 419 EMEAQRERARAA------GKFSVDYNDAIKLEGETSFTGYELLESD-------------- 458

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   +S V A+ ++GE V+   +G+   VV D+TPFYAE+GGQ+GDTG        
Sbjct: 459 --------ASTVVALFKEGEAVDTLQTGETGLVVLDETPFYAESGGQVGDTGALNASASV 510

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +T+  K+ +   +HH  VE+G L     +   +D   R+ +++NHSATHLLH AL  +
Sbjct: 511 FAVTNCTKEGKN-NLHHGSVEQGSLSVGDKVAPQVDAVRRKAIALNHSATHLLHEALRVV 569

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS      LRFD +H + +T  ++  +E  VN  I  N  VVT IM  E A 
Sbjct: 570 LGEHVQQKGSLNDDQRLRFDFSHFEAVTPEQIAEVEALVNQQIRDNSEVVTEIMEIEAAK 629

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GAAAL G KY+D VRV+++    GG  S  LCGGTH   TG+I LL I SE  + AGI
Sbjct: 630 AKGAAALFGEKYDDVVRVLTM----GGDFSVELCGGTHAKRTGDIGLLKITSEGGVAAGI 685

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RR+EA+TG  A  +   Q              +G    +++E   + R+L+    + K +
Sbjct: 686 RRVEAVTGAVALDYFADQ--------------KGQFEAKLQEQQAKTRQLEKELEQMKAK 731

Query: 781 LNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L          +   +  V  ++  +  V+ K L+  +D L+ K+ SG+++L   S + K
Sbjct: 732 LAAAKGADLVSNAVDVKGVKVLAAKLEGVEPKALRDTIDQLKNKLGSGVVVLATES-DGK 790

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            ++   VT++L  +  A DL +     L GG GGGRP  AQ GG +    + A+  VA  
Sbjct: 791 IALAAGVTKELTSKVRAGDLIKELTAKL-GGKGGGRPDFAQGGGTDLQALEGALDSVAGL 849

Query: 896 LK 897
           ++
Sbjct: 850 VE 851


>gi|205830260|sp|A5D3F4|SYA_PELTS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 877

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/909 (39%), Positives = 551/909 (60%), Gaps = 49/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK  FTG  KP Y  V
Sbjct: 1   MTGNEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+++VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+I+++ +D+EAF++W K  G+ A +I+R+  + NFW +   GPCGPCSEI+ D G 
Sbjct: 117 ADKLWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIGV-GPCGPCSEIYVDLGA 175

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVF+QF +  +     L    IDTG GLER+A+V+Q 
Sbjct: 176 ERGCGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQG 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DLF+ ++  +  + G+KY  +G   V  +VI DH R+ +F +ADG LP+NEGR
Sbjct: 236 VPTNFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + RLLG  +P +  +  A+  +MG  YPEL+  +  +   +R E+ER
Sbjct: 296 GYVIRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEER 355

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           FG+TL +G  +L+ +++   +    +++G+ AF+LYDT+G PL++ Q++   +GL  +D 
Sbjct: 356 FGETLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDT 414

Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F +A+EEQR RAR+           + ++  ++E+ G T F+GYD L           
Sbjct: 415 DGFGRAMEEQRQRARSARQETDYISGRDAMFKKMREEVGETVFVGYDALE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +  V  IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G  
Sbjct: 465 -------------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKV 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
               + ++I +V K  E +FVH   V  GIL+   ++   +D   R     NHSATHLLH
Sbjct: 512 TAADLEVEIHEVTKPVENLFVHRGKVVAGILKEHDTVTARVDPARRAATCRNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + P+ LRFD TH    T  EL+ +E+ VN ++   LPV     
Sbjct: 572 KALKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPEELQKVEELVNRMVLSALPVEAFET 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +  +A   GAAAL G KY +RVRVV +     G  S  LCGGTH+ +T E+ L  ++ ES
Sbjct: 632 SLAEARKMGAAALFGEKYGERVRVVKM-----GDFSLELCGGTHLRNTAEVGLFKLLGES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG+ A S++  ++E+L  +A  +K +    V RVE + +  R L+  +
Sbjct: 687 SVGAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVKAAPHEAVRRVEGLLQTVRDLEAEN 746

Query: 775 AKRKLQLN---VEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + +L    V+DL     ++  V  ++   +  D   L+ ++D L+ ++ SG+I+L G
Sbjct: 747 EALQARLARYQVQDLMDRLREVKGVKVLAGQAAAPDMDSLRGMVDLLRDRVGSGVIVL-G 805

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + E + +++  VT+DL+++  +A  L +  A V+GGGGG GRP MAQ+GG + ++  +A
Sbjct: 806 SAGENRVNLVAAVTKDLVEKGLHAGKLVKELAPVVGGGGG-GRPEMAQAGGKDPSRLKEA 864

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 865 LEKTYKAVE 873


>gi|170722926|ref|YP_001750614.1| alanyl-tRNA synthetase [Pseudomonas putida W619]
 gi|169760929|gb|ACA74245.1| alanyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 897

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/897 (42%), Positives = 534/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 24  MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 83  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWL 142

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 143 NLPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 202

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 203 CTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 262

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 263 ERISAVMQHVHSNYEIDLFQNLLSAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 320

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 321 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 380

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 381 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 439

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT F+GY+   G     
Sbjct: 440 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDTATDFVGYNATEG----- 487

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 488 ------------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGD 529

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG      +R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 530 TGYLQSGAVRFDVQDTTK-TGGAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSAT 588

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +T A++K++ED VN  + +N PV 
Sbjct: 589 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVE 648

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T I + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 649 TEITDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 704

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 705 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQL 764

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 765 EKQLEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 824

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 825 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 879


>gi|251798323|ref|YP_003013054.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247545949|gb|ACT02968.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 877

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/910 (38%), Positives = 525/910 (57%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+   H + PS+SL+P NDP+L++ N+GM P K  F G+  P    +
Sbjct: 1   MKASEIRSKWLSFFESKRHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  +   
Sbjct: 61  TNSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTSKEWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEA+K W +  GL A++I ++  ++NFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPDRLSVTVYPEDEEAYKYWNEKIGLPAERIYKL--DENFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           GE              E ER++E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 174 GEKYGDLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  +N+D DLF  +I+ + ++  +KY     + V  +VI DH+R+ +F + DG++P+N
Sbjct: 234 LQDVDSNFDTDLFIPIIERTCEIASVKYHVNDEHDVALKVIADHIRTVAFAVGDGVMPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY++RR++RRA+ Y + +G   P +  L   +   MG  YPE++  +  IE  +R+E
Sbjct: 294 EGRGYIIRRLLRRAVRYGKTIGIDRPFLYELTSVVGEVMGVYYPEVVDKREFIERVIRTE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GLV+L  +++   K     + G+ AF+LYDT+G P D+ +D     G+  
Sbjct: 354 EERFHETLSDGLVMLSDLVATARKAGTTEIGGEDAFRLYDTYGFPFDLTEDFASENGMT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+E QR RARA     G    +     L +    ++F+GY+ L         
Sbjct: 413 VDREGFDAAMEAQRERARAARQDTGGMNVQG--GPLADFTVKSEFVGYNELVT------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + AIV +  +V+    G +V V+ D+TPFYAE+GGQ+GD G
Sbjct: 464 ----------------EAQITAIVHEDSLVDLVGEGSRVLVLLDRTPFYAESGGQIGDKG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+G  LQ+ DV K   G  VHHA+V  G +RT  ++   +    R  +  NH+ATHL
Sbjct: 508 TIVGNGFTLQVEDVTKAPHGQSVHHAVVASGTVRTGETVEAVVIRSVREDVIKNHTATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H   IT  EL  IE  VN+ I    PVV  
Sbjct: 568 LHKALKEVLGDHVNQAGSLVQADRLRFDFSHFGSITPEELTEIERKVNEQIWIGTPVVIE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +A A GA AL G KY D VRVV V     G +S  LCGG HV++T +I +  +VS
Sbjct: 628 SKQIAEAKAMGAMALFGEKYGDIVRVVQV-----GNYSIELCGGCHVANTSQIGMFKLVS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +G+RRIEA+TG+ A S++ GQ + LK  ++ LK +  +V  R+E ++ + ++L  
Sbjct: 683 ESGIGSGVRRIEAVTGRHAYSYMEGQLDLLKQASALLKANNNDVPKRIEALFAQVKELGR 742

Query: 773 IHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   + +L+       + +   + DV  +S  +S      L+ + D L+ K+ S +I+L
Sbjct: 743 ENESLQAKLSRIEAGSLEQNAKTVGDVTVLSAKVSAPTMDALRGIADELKAKLPSAVIIL 802

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G  +E K S++  V+ DL+ + F+A  + + +A    GG GGGRP MAQ+GG + +K D
Sbjct: 803 -GAVQEDKVSLVAAVSADLVKKGFHAGKIVKEAAAHC-GGSGGGRPDMAQAGGKDASKLD 860

Query: 887 QAIAGVASFL 896
           +A+      +
Sbjct: 861 EALKLAEELV 870


>gi|167034974|ref|YP_001670205.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|166861462|gb|ABY99869.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 897

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/897 (42%), Positives = 530/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 24  MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  
Sbjct: 83  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWL 142

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 143 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 202

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 203 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 262

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 263 ERVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 320

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 321 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 380

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 381 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 439

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD         
Sbjct: 440 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDSATEFLGYDATE------ 486

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 487 -----------------AQGKIIALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGD 529

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG       R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 530 TGFLQAGAARFDVRDTTK-TGGAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSAT 588

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  + +N  V 
Sbjct: 589 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVE 648

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 649 TELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 704

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 705 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 764

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 765 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 824

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 825 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 879


>gi|93006462|ref|YP_580899.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|122415158|sp|Q1QA88|SYA_PSYCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|92394140|gb|ABE75415.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
          Length = 890

 Score =  927 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/913 (40%), Positives = 526/913 (57%), Gaps = 54/913 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  F++FF    H  + SSSLIP NDPTL+FTN+GM  FK  F G E   Y    T
Sbjct: 7   SADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I   W+ LT  +   +D
Sbjct: 67  SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAID 126

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RLY+T+Y+ D+EAF +W K  G+ +++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 127 KNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 186

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D G  I GGLPG   E+G+RYIEIWN VFMQF +Q       LP  S+DTGMGLER+
Sbjct: 187 VFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTGMGLERI 246

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q    NY+IDLF HL+ A+ ++  ++ E     + +VI DH+R+ SFLIADG+ P+
Sbjct: 247 SAIMQGVHGNYEIDLFVHLMDAAAEI--LEIENQQQSSLKVIADHIRAVSFLIADGVTPS 304

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        ++  L  EMG+AYPEL   + +IE  ++ 
Sbjct: 305 NEGRGYVLRRIIRRAVRHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQK 364

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ +F KTL +GL LL   L  L   + L+G+ AFKLYDT+G P+D+  DI   RG+  I
Sbjct: 365 EETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKLYDTYGFPVDLTADITRERGI-VI 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F++ ++ QR RAR       +G  +  + S+ +    T FIGY+ L          
Sbjct: 424 DEAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLEEEGV----- 472

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             + A+ Q G   +    G +  +V D+TPFYAE GGQ+G+ G 
Sbjct: 473 -----------------TIDALYQDGNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGE 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++ D +K  + I  H+ +V  G + T+ +    +    R   + NHSATHLL
Sbjct: 516 IRTASGVFEVQDTKKSGQAII-HYGVVTMGDISTKQTADAQVLSSIRAASAKNHSATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  V+Q GS ++ + LRFD ++ KP+++AE+  IE  VN+ I  N P     
Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIEN 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVV-----SVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           M+ ++A+  GA AL G KY   VRV+     S+        S  LCGG HV  TG+I +L
Sbjct: 635 MSIDEAMKQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVL 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+TG  A  ++   +++L  LAS LKV +  V  RV  + ++ R
Sbjct: 695 KITSESGIAAGIRRIEAVTGMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +L+    + + ++              IA    +   +S +D K ++++MD ++ K+   
Sbjct: 755 ELEKQLERLEQKIASAQAANLLDDVQTIAGTPVLISTLSGIDGKSIRTLMDDIKSKLPDS 814

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L+G  K+++ ++   V + +  +  A D+ R  A  L GG GGG+P  AQ G P   
Sbjct: 815 VIVLIG-DKDEQLALAASVAKSVTAKVKAGDIIRHLASEL-GGKGGGKPDYAQGGAPKAA 872

Query: 884 KADQAIAGVASFL 896
             +  +  + +++
Sbjct: 873 NTNAVVNALPAWI 885


>gi|188996094|ref|YP_001930345.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|205830234|sp|B2V709|SYA_SULSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188931161|gb|ACD65791.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 876

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/903 (40%), Positives = 540/903 (59%), Gaps = 41/903 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+  
Sbjct: 4   MTADEIRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK  R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+  ++ 
Sbjct: 64  ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLEIP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L ++V++ED+EAF++W K  GL   KI R+   DNFWSM +TGPCGP SEI++D+GE
Sbjct: 124 KEKLLVSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G     +E+  RY+EIWNLVFMQ+ +  K     LP  SIDTGMGLER+A+VLQ   
Sbjct: 184 KF-GNPEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVD 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +NYD DLFK +IQ +E+V+G +Y  N  + +  RVI DHLR+ +FLI+DG+LPANEGRGY
Sbjct: 243 SNYDTDLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ Y + LG  +P +   +  +  +M +AYPELIQ +  I+   +SE+E+F 
Sbjct: 303 VLRRIIRRALRYGKNLGIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFI 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTL R + +L  ++    K+    L G+  FKLYDT+G P+D+M++IL   G    D+I 
Sbjct: 363 KTLKRSMDILYQMIEQARKENRRHLTGEETFKLYDTYGFPIDLMEEILKDEGFT-FDLIE 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  LEEQ+ RAR       S   + ++ +LK K    QF+GY+ L              
Sbjct: 422 FHNLLEEQKERARKSWK-SQSKEIKPVYLTLKNKLPENQFVGYETL-------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S V AI++  ++V+ A  G+ +E+V D TPFY E GGQ+GD G   GD
Sbjct: 467 --------TSENSKVLAIIKGDQLVDTAKEGEDIEIVLDITPFYPEKGGQIGDRGIIEGD 518

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D Q   +G+ VH   V  G ++    +    D + R  +  +H+ATHLLH AL
Sbjct: 519 EFLFEVLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKTDKERRENIMRHHTATHLLHAAL 578

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++ + LRFD TH + +T  ELK++E+ VN  I +N  VV + M  E
Sbjct: 579 RNVLGDHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYE 638

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+ SGA A+   KY D VRV+S         S  LCGGTHV  TG+I    I+SES++ 
Sbjct: 639 EALKSGAMAIFEEKYADVVRVISAGI------SKELCGGTHVKRTGDIGYFKILSESAVS 692

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           +G RRIEA+ G +A    + +   +K L+  L   +  ++ RV ++  + ++   ++ + 
Sbjct: 693 SGTRRIEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENL 752

Query: 776 KRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++KL L+   E+L+  +          +  ++  EL+ + D L++K+   +I++     E
Sbjct: 753 RKKLALSNINENLNIIEKEGFKVAYVSVENLNPNELREIADHLRQKLGKSVILVASKDAE 812

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K K + ++ V+++L + + A D+ +  A     G GGGRP  AQ G  + +K  Q     
Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASA-ANGSGGGRPDFAQGGINDTSKLSQLFEEF 871

Query: 893 ASF 895
              
Sbjct: 872 KKI 874


>gi|325271425|ref|ZP_08137952.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324103458|gb|EGC00778.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 874

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/897 (42%), Positives = 531/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELTSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L +  ++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLRILEQDLAQL-QGAVVPGDVVFKLYDTYGFPMDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD   G     
Sbjct: 417 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDSATEFLGYDATEG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 465 ------------------QGKIIALYKDGQSVDQLGVGEQGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 507 SGYLQAGAARFDVRDTTK-TGGAFLHHGVVTSGALLIGAPVEAKVDADVQHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   +LK +ED VN  + +N PV 
Sbjct: 566 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQLKQLEDIVNREVRKNTPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+++    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TELTDIETAKAKGAMALFGEKYGDTVRVLTM----GGDFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 682 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 802 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 856


>gi|229592147|ref|YP_002874266.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229364013|emb|CAY51570.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 872

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/892 (43%), Positives = 530/892 (59%), Gaps = 54/892 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW  LT    L
Sbjct: 60  ATSSQKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY  D+EA+ +W +  G+  +++IRI  N       DNFW+M +TGPCGPC+
Sbjct: 120 PKEKLWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGLER
Sbjct: 180 EIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+Q   +NY+IDLF +L+ AS    G   E  +  + +V+ DH+RS  FLIADG+LP
Sbjct: 240 ISAVMQHVHSNYEIDLFTNLLSASAAAIGCANESQS--SLKVVSDHIRSCGFLIADGVLP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA  +   LG T      ++ AL  EMG A+PEL Q +  IE  L+
Sbjct: 298 SNEGRGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGEAFPELKQQQGNIERVLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E+F KTL+ GL +L+  L+ L K  ++ GDV FKLYDT+G P+D+  DI   R L  
Sbjct: 358 AEEEQFSKTLEHGLKILEQDLAEL-KGTVVPGDVVFKLYDTYGFPMDLTADIARERELT- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F + +E QR RAR+ S      +    + +L +    T+F GY    G       
Sbjct: 416 IDEAGFEREMEAQRVRARSAS------SFGLDYNTLVKVDVPTEFTGYKATVG------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           ++ + A+ + G+ V+    G +  VV DQTPFYAE+GGQ+GD G
Sbjct: 463 ----------------AAKIVALYKDGKSVDVLSEGDEAVVVLDQTPFYAESGGQIGDCG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R ++ D  K   G F+HH ++  G L     +   +D   R   ++NHSATHL
Sbjct: 507 FLSSTSGRFEVRDTTK-TGGAFLHHGVLVLGNLTVGAPVDTQVDADVRHATALNHSATHL 565

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD +H + I   ++K++ED VN  I +N  V T 
Sbjct: 566 LHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDVVNAEIRRNTAVETE 625

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + E A A GA AL G KY D VRV+S+    GG  S  LCGG H + TG+I LL I+S
Sbjct: 626 ETDIETAKAKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIALLKIIS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + +G+RRIEA+TG  A ++L   +E+LK  AS +K S+ N++ ++  + E  R L+ 
Sbjct: 682 EGGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEK 741

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + +           S   + DV  ++  +   D K L +++D L+ K+   +I+L
Sbjct: 742 QLEQLQAKAASAAGDDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL 801

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG
Sbjct: 802 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGG 851


>gi|205830249|sp|A5UY81|SYA_ROSS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 905

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/928 (40%), Positives = 538/928 (57%), Gaps = 67/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y   T
Sbjct: 5   SSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK F+L  
Sbjct: 65  TVQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVFELPV 124

Query: 123 RRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV++ D+E      A +LW   +G   D+++R    DNFW MA+TGPCGPCSEI 
Sbjct: 125 ERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQFE+        L + S+DTGMGLERMA 
Sbjct: 184 IYIGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFER---STMQPLHRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  LI+    + G         +  +R + DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA+   R +G+ +P +  ++ A+  +MG+ YPEL +    I ET+  
Sbjct: 301 NTGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILETVDL 360

Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  G+ +L+ V+         ++ GD AF L DT+G PLD+ Q I    GL 
Sbjct: 361 EERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + + +EEQR R R  +    +   E +W  +      T+F GY  + GS     
Sbjct: 421 -VDEAGYERRMEEQRDRGRRAAQFKRAAEAE-VWAGI--DLPPTRFTGYAAVSGS----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                              +V+AIV  G+ V EA +GQ+V++  D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------GVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQVGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  IG   R+++ DVQ+   G+ VH+ +VE G +     +   +D   R  +  NH+ATH
Sbjct: 514 GVLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG H +Q GS + PD LRFD TH++P+T  +L  IE  VN  I  + PVV 
Sbjct: 574 LLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADTPVVW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-----------------SSALC 694
           + ++ + AI +GA AL G KY D VR+V++   +G                    S  LC
Sbjct: 634 QELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCSRELC 693

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV  +GEI L  I+SESS+ AG+RRIEA+TG  A + +  Q   L+++A+ +   Q 
Sbjct: 694 GGTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVGAPQT 753

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKEL 809
            +V RVE +  E ++ Q    +   ++   +L         + D+ F++  +   ++  L
Sbjct: 754 QLVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPNAARL 813

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGG 868
           + + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ GG G
Sbjct: 814 REMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV-GGSG 871

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGRP MAQ+GG +  K  QA+  VA+ +
Sbjct: 872 GGRPDMAQAGGRDSAKIPQALEHVAAVI 899


>gi|325290063|ref|YP_004266244.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965464|gb|ADY56243.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/908 (37%), Positives = 522/908 (57%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL FFQ+ GH L  S+SLIP NDPTL+ T +GMVPFK  F  Q +P +  
Sbjct: 1   MYTGDQLREMFLNFFQEKGHRLQASASLIPKNDPTLLLTVAGMVPFKPYFMRQVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L
Sbjct: 61  ATTCQKCVRT----PDLERVGKTARHHTFFEMLGNFSFGDYFKEEAITWAWEYVTEVIKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ ED EA ++W   +G+S D+++     +NFW+    GPCGPCSEI+ D G
Sbjct: 117 PADQLWITVHPEDHEAREIWINKAGVSPDRLL--DDEENFWAAGPVGPCGPCSEIYVDLG 174

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +R++EIWNLVFMQ+ +        LP+ +IDTGMGLER+ +V+Q
Sbjct: 175 EARGCGKPDCAIGCDCDRFLEIWNLVFMQYTRDESGTLTPLPRQNIDTGMGLERITSVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    ++ G+ Y+ +       +VI DH R+ +F++ DGI P+++G
Sbjct: 235 GVVSNFDTDLFIPIINKIAEIAGINYKDDPKKDTALKVISDHTRAIAFMLGDGIRPSSDG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARL+G  +P +  +   + ++   AYPEL + +  I   L+ E++
Sbjct: 295 RGYVLRRILRRAVRYARLIGIEKPFLEQIFAVIQSKYAHAYPELKENENFILNHLKLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L K  +  +NG  AF LY+T+G P+++ ++IL   G+  +D
Sbjct: 355 NFQATLEQGTQILQDKVESLKKQGLQEINGTDAFHLYETYGFPVELTEEILAEEGIT-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + ++  A EE R  A+  S  + S        +   + G T+F+GY  L    F      
Sbjct: 414 MENYQLAFEEHRKAAKEQSRQMVSSAENMALINKARELGKTEFVGYRQLSTETF------ 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+    E V  A  G++V  +  +TPFYAE+GGQ+ D G  
Sbjct: 468 -----------------VAALFSGEEEVASAGEGEEVLCLLPRTPFYAESGGQVADKGWI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +    Q+ +V+K  +G F H   +  G+L+ + ++V  +D + R+ ++ +HS+THLLH
Sbjct: 511 RSERAEAQVMEVRKLPDGSFCHRLRITSGVLKVQDTVVAEVDGEIRKSIAAHHSSTHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS ++ + LRFD +H   +++ EL ++E+ +N  I   L V    M
Sbjct: 571 TALRKVLGQHVQQAGSLVSEERLRFDFSHFSAMSTEELNTVEEEINRQIRGALSVNIAEM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             EDA A GA AL G KY D VRVV +     G  S+ LCGGTHV +TGEI ++ I+SES
Sbjct: 631 CMEDAKAQGAIALFGEKYGDEVRVVRM-----GEFSTELCGGTHVQNTGEIGIVKILSES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+ G++A +++   +E L+ +A  LK + G  + +  ++  + +  +   
Sbjct: 686 GIGAGLRRIEAVAGKQALAYIHSLEESLEEIAVILKAAPGESLKKAGQMAGQLKDAEREI 745

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K   +L+  +         +I  V  ++  +   D   L+ + D L+ +++ G+I+L G
Sbjct: 746 EKLNARLSKYEAENILDKVQEIQGVKVLAAKVQAPDMDALRKMSDTLKDRLKEGVIIL-G 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            S E K   + VV+   L+  +A  + +  A    GG GGGRP MAQ+GG + +K ++A+
Sbjct: 805 ASAEGKVHFVSVVSPSGLNGLHAGKIIKEVAAF-TGGSGGGRPDMAQAGGKDPSKIEEAL 863

Query: 890 AGVASFLK 897
           A V + +K
Sbjct: 864 AKVPAIIK 871


>gi|56696902|ref|YP_167264.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|81558517|sp|Q5LRU1|SYA_SILPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56678639|gb|AAV95305.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 890

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 437/914 (47%), Positives = 570/914 (62%), Gaps = 44/914 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +++ IR+TFL +F K GH ++PSS L+P NDPTLMFTNSGMV FKN FTG +K  Y  
Sbjct: 1   MPSLNDIRSTFLNYFAKQGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T++FD+
Sbjct: 61  ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELITRDFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY  D+EAF++WKK+ G+   +IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKKV-GVPESRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS E +G+R+IEIWN+VFMQ E+        L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEKFEDGSMVDLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLFK LI+AS   T +   G+  V+HRVI DHLRS+SFLIADG++P+N+GRGY
Sbjct: 240 SHDNYDTDLFKALIEASADATSVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+  L  +MG+AYPEL +A+ LIEETL  E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVRTLVGQMGAAYPELGRAQALIEETLLLEETRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L+ L ++  L G+ AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 360 QTLDRGLKLLDDELTALPEEAPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDTDGFD 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G  T   IWF + +  GAT F+GYD                  
Sbjct: 419 AAMAEQKAKARAAWAGSGESTDNAIWFDVLDVAGATDFLGYDT----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA---IG 536
                         A+V  G + +    G    VV +QTPFY E+GGQ+GDTG       
Sbjct: 462 ------EKAEGQALALVVDGALSDRIAEGGSGWVVTNQTPFYGESGGQVGDTGVIRRLEN 515

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 + D +K A+G ++ H   +ERG L    ++ L +D+  R  +  NHSATHLLH 
Sbjct: 516 RDHVALVEDSRKFADGKVYAHKVTMERGALAKGDAVELEVDHARRSAIRANHSATHLLHE 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HV+Q GS    D LRFD +H+K +T AEL  +   VN  I QN  V TRIM 
Sbjct: 576 ALREALGDHVAQRGSLNAADRLRFDFSHAKALTEAELAQVGAEVNRFIRQNSRVETRIMT 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +DA A GA AL G KY D VRVVS+         DG   S  LCGGTHV+ TG+I +  
Sbjct: 636 PDDARAIGAQALFGEKYGDEVRVVSMGRAETGKGADGKTWSIELCGGTHVAQTGDIGMFV 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ +S+  AG+RRIEA+TGQ A  HL  +  +L  + + LK     V  RV  + +E + 
Sbjct: 696 LLGDSASSAGVRRIEALTGQAAFDHLSQEGARLSQVTAMLKAQPAEVAERVRALMDERKA 755

Query: 770 LQLIHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           LQ   A+ +  L +   +        H++  V F++ ++S V  K+L +++D  + ++ S
Sbjct: 756 LQNEVAQLRRDLAMAGGAGQGGGAETHEVGGVPFLAQVLSGVSGKDLPALIDEHKSRMGS 815

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           G ++L+  +  K A     VTEDL  R +AVDL + +   LGG GGGGRP MAQ GG + 
Sbjct: 816 GAVLLIADAGGKAAV-AAGVTEDLTARVSAVDLVKAAVAALGGKGGGGRPDMAQGGGQDA 874

Query: 883 NKADQAIAGVASFL 896
            KAD AI      L
Sbjct: 875 GKADAAIKAAEQVL 888


>gi|171464036|ref|YP_001798149.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193574|gb|ACB44535.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 874

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/911 (42%), Positives = 540/911 (59%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             VS IR  +L+FF + GH+++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKVSQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYNRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F L 
Sbjct: 61  TTTQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQIFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L +TVY ED+EAF++W K  G+ A++IIRI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KEKLLVTVYAEDDEAFEIWNKQIGVPANRIIRIGDNKGARYASDNFWMMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G+ IPGG PGS  E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGDHIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQ---VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           A VLQ   +NY+IDLF +L++AS++     G +       + +VI DH+R  SF++ DG+
Sbjct: 241 AAVLQHVHSNYEIDLFVNLLKASKEAVDAAGGENCDPESPSLKVIADHIRVCSFIVVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P N GRGYVLRRI RRA+ +   LG  +P    L+PAL  EM  AYPEL  A+  + E 
Sbjct: 301 IPGNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMSDAYPELRAAQDKVSEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+ERF +T+  G+ +LDG L+  G  ++++G+ AF+L+DT G PLD+  D+   RG+
Sbjct: 361 IKQEEERFFQTIANGMEILDGALA--GDAKVVDGETAFRLHDTFGFPLDLTTDVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+  +++QR +ARA           K+   L  K   TQF GYD L+      
Sbjct: 419 T-VDADGFDVVMQKQRDQARAAGK-------FKVAQGLDYKGRPTQFYGYDTLKHEG--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V A+   G  V    +G    +V D TPFYAE+GGQ+GD
Sbjct: 468 -------------------AKVTALYVDGSAVPCVKAGDVAVIVLDNTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    + IR  +    K    +F H   V  G L+    L   +D + R     NHSAT
Sbjct: 509 KGELRNESIRFAVEGTFKIQADVFGHQGEVLEGELKVGDVLNAIVDTRQRTDTMRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LG HV Q GS +     RFD TH+ PIT  ++  IED VN  I +N    
Sbjct: 569 HILHRALREVLGDHVQQKGSLVDAAKTRFDFTHNAPITVEQIHRIEDIVNREILENTATS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M+ +DA  +GA  L G KY D VRV+ +        S  LC GTHVS TG+I  L I
Sbjct: 629 GKVMSLDDAQKTGAMMLFGEKYGDEVRVLEIGS------SKELCCGTHVSRTGDIGSLKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE  + AGIRR+EA+TG  A   L G ++K+   A+ LK   G++V RV ++ +  R+ 
Sbjct: 683 VSEGGVAAGIRRVEAVTGNNALHFLQGLEDKVNEAAAILKTHPGDLVNRVAQLQDSLRQA 742

Query: 771 QLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
           +    K   KL  +  D    +  DVN +  + + +   D+  L+  MDAL+ K+++  I
Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGIKVLAARINSADASVLRKTMDALKAKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  VT D + +  A DL    A+ +GG GG G+P MA +GG + +K 
Sbjct: 803 VLASVQGD-KVSLIAGVTTDSIGKIKAGDLVNFVAQQVGGKGG-GKPEMAMAGGTDPSKL 860

Query: 886 DQAIAGVASFL 896
             A+ GV  ++
Sbjct: 861 GVALDGVKDWV 871


>gi|134298636|ref|YP_001112132.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|205830077|sp|A4J2K4|SYA_DESRM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134051336|gb|ABO49307.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
          Length = 878

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/910 (40%), Positives = 549/910 (60%), Gaps = 49/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L FF++ GH++LPS+SLIP NDP++++T +GMVPFK  FTGQ  P YQ 
Sbjct: 1   MLTGKEIREKYLRFFEQRGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R      D+++VGRT RHHTFFEMLGNFSFG YFKE  I  AW+ +TKE +L
Sbjct: 61  VTTCQKCIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKESIIPWAWEFITKELNL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L+IT+Y +D+EAF++W K+ G+ +++I+R+  + NFW +   GPCGPCSEI+ D G
Sbjct: 117 PKEKLWITIYQDDDEAFEIWNKVVGIPSERIVRLGKDTNFWEIGV-GPCGPCSEIYVDLG 175

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ
Sbjct: 176 EARGCGSPECQVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLENKGIDTGMGLERVASVLQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D D+F+ ++  +  + G +Y  + +  +  +VI DH R+ +F ++DG LP NEG
Sbjct: 236 GVASNFDTDIFREIMDFTANLAGQEYGQKADIDLALKVIADHCRAVTFAVSDGALPGNEG 295

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYV+RR++RRA+ + R+LG  EP +  +  A+  +M  AYPEL Q    +   +R+E+E
Sbjct: 296 RGYVIRRLLRRAVRFGRVLGVREPFLYKVAQAVIKQMQDAYPELKQKAEHVLRVIRTEEE 355

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL  G  +L  +++         + GD AFKLYDT G PL++ Q+I   +GLA +D
Sbjct: 356 RFLETLAAGSDILSALINEAKASGASEITGDDAFKLYDTFGFPLELTQEIAEEQGLA-VD 414

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +  FN A+EEQR RAR+        +   + + +L+E+ G T+FIGY  L          
Sbjct: 415 VEVFNAAMEEQRKRARSARQETEYLSERGVLYKALREELGETRFIGYSALEAD------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S + A+++ G     AV+G++VE+V D TP YAE+GGQ+ D   
Sbjct: 468 ----------------SNIMALLKDGMQEISAVAGEEVEIVLDVTPCYAESGGQVADHAI 511

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G  + ++IT V K  EG+ +H   V  GI++   S+   +D   R+  + NHSATHLL
Sbjct: 512 LRGPDLEVEITSVNKPVEGLVIHRGKVLSGIIKRHDSVKAIVDQPRRQDTARNHSATHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS + PD LRFD TH   +TS EL+ IE+ VN+ +  NL +    
Sbjct: 572 HKALKEVLGDHVNQAGSLVEPDRLRFDFTHYAAVTSEELRRIEEIVNEAVLSNLSIEVFE 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            +   A   GAAAL G KY  +VRVV +     G  S  LCGGTH++ST E+ L  I +E
Sbjct: 632 TSLSKAKEMGAAALFGEKYGKQVRVVKM-----GDFSMELCGGTHLTSTAEVGLFKIFNE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +S+ AG+RRIEA+TG     +L  ++E+L+ +AS +K     +V R E + ++ + L+  
Sbjct: 687 TSVGAGLRRIEAVTGTGVLKYLKAKEEQLEEIASVIKSPMHELVRRSEALVQQNKSLEQE 746

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + +L   ++        +  +V  ++ +++  D   L+ ++D L+ K+ SG+I+L 
Sbjct: 747 IEALRNKLAKSEVQDILGNIKRAKEVPVLASVVAAPDMDNLRGMVDMLRDKMGSGVILLG 806

Query: 829 GISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + E K +++  VT+DL     +A +L +  AK++GGGGG GRP MAQ+GG N  K  +
Sbjct: 807 STAGE-KVNLVAAVTKDLHGQGLHAGNLVKEIAKMVGGGGG-GRPDMAQAGGKNPEKLQE 864

Query: 888 AIAGVASFLK 897
           AI  V   ++
Sbjct: 865 AIDQVCRVVE 874


>gi|257093631|ref|YP_003167272.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046155|gb|ACV35343.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 878

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 528/911 (57%), Gaps = 55/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 8   MKS-AEIRDKFLKFFESKGHQIVASSSLVPHADPTLLFTNAGMNQFKDVFLGFDKRPYLR 66

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LL   + L
Sbjct: 67  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIRYAWELLVDVYGL 126

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
              RL++TVY ED+EA+ +W +  G+ A+++ RI  N       DNFW M +TGPCGPC+
Sbjct: 127 PPDRLWVTVYAEDDEAYDIWTREIGVPAERVERIGDNKGARYASDNFWMMGDTGPCGPCT 186

Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D       G      EEG+RYIEIWN VFMQF +        LPK S+DTGMGLER
Sbjct: 187 EIFYDHGEGIPGGPPGSPDEEGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLER 246

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
            A VLQ   +NY+IDLF  LI A+ +         +  + RV+ DH+R+ +FLIADG++P
Sbjct: 247 TAAVLQHVHSNYEIDLFVRLIAAAARE--TASAELDSPSLRVLADHIRACAFLIADGVIP 304

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        L+P L  EMGSAYPEL+  +  + + LR
Sbjct: 305 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHRLVPDLVAEMGSAYPELVSQQARVTDVLR 364

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ RF +T++ G+ +L+G L+ L    + NG  AFKL+DT G PLD+  D+   RG++ 
Sbjct: 365 QEEVRFFETIEHGMSILEGELASLPGQGVFNGTTAFKLHDTFGFPLDLTADVCRERGVS- 423

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F+ A+ +Q+ +ARA           ++  +L      T F GY+ L         
Sbjct: 424 VDVAAFDAAMAQQKEQARAAGK-------FRMATALDYSGPPTTFHGYERLD-------- 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V+  V A+ + G  V+E   G    VV D+TPFYAE+GGQ+GD G
Sbjct: 469 ---------------VTGKVLALYRDGSPVDELSEGDIGVVVLDETPFYAESGGQVGDRG 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                G    + D QK    +F HH +V  G+LR +  +   +D   R +   NHSATHL
Sbjct: 514 VLQTAGGIFAVEDTQKIQAAVFGHHGVVRTGVLRVDDGVAAKVDVLARARTVRNHSATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H AL  +LG HV Q GS + P+  RFD  H+ P+++ E++ +E  VN+ I  N     R
Sbjct: 574 MHKALREVLGGHVQQKGSLVDPEKTRFDFAHNAPLSADEIRHVEVIVNNEILANAATDAR 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  E+A  SGA  L G KY D VRV+++        S  LCGG HV  +G+I L  I++
Sbjct: 634 IMPIEEAQRSGAMMLFGEKYGDEVRVLTIGS------SKELCGGVHVRRSGDIGLFKILA 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RR+EA+TG  A + +  Q   L   A+ +K     V  ++ ++ +  R L+ 
Sbjct: 688 ETGVAAGVRRVEAVTGDNALALVQQQQALLAEAAAAVKAPVSEVPAKLAQVLDNVRSLEK 747

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A+ K +L             ++     ++ ++   D   L+S +D L+ K++S  ++L
Sbjct: 748 ELARLKARLASAQGDDLLAQAVEVKGARVLAAVMDGADVNALRSTIDKLRDKLKSAAVVL 807

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + + K +++  VT DL  +  A +L  + A+ + GG GGGRP MAQ+GG +      
Sbjct: 808 ASTA-DGKVTLIAGVTGDLTGKVKAGELVNMVARQV-GGKGGGRPDMAQAGGSDAANLPA 865

Query: 888 AIAGVASFLKK 898
           A+A V +++++
Sbjct: 866 ALASVRAWVEQ 876


>gi|205830254|sp|B1JCG9|SYA_PSEPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/897 (42%), Positives = 534/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERISAVMQHVHSNYEIDLFQNLLSAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT F+GY+   G     
Sbjct: 417 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDTATDFVGYNATEG----- 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 465 ------------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG      +R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 507 TGYLQSGAVRFDVQDTTK-TGGAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +T A++K++ED VN  + +N PV 
Sbjct: 566 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T I + E A   GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TEITDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 682 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 802 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 856


>gi|270264045|ref|ZP_06192313.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270042238|gb|EFA15334.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 839

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/876 (43%), Positives = 541/876 (61%), Gaps = 56/876 (6%)

Query: 36  LMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95
           ++FTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGN
Sbjct: 1   MLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN 60

Query: 96  FSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIR 153
           FSFG YFK  AI  AW+LLT    F+L + RL++TVY+ D+EAF +W+K  G+ A++IIR
Sbjct: 61  FSFGDYFKHDAISYAWELLTGENWFNLPKERLWVTVYETDDEAFDIWQKQIGVPAERIIR 120

Query: 154 ITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVF 205
           I  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS+E +G+RYIEIWN+VF
Sbjct: 121 IGDNKGAAFASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVF 180

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
           MQF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF  LI A  +VTG    
Sbjct: 181 MQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFSKLITAVAKVTGAVDL 240

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
            N   + RVI DH+RS +FL++DG++P++EGRGYVLRRI+RRA+ +  +LG  E     L
Sbjct: 241 DNK--SLRVIADHIRSCAFLVSDGVMPSSEGRGYVLRRIIRRAIRHGNMLGAKESFFYKL 298

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           +  L   MG A  EL + + L+E+ L++E+++F +TL+RGL LLD  L++L + + L+G+
Sbjct: 299 VAPLIEVMGPAADELKRQQSLVEKVLKTEEDQFARTLERGLALLDEELANL-QGDTLDGE 357

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
            AF+LYDT+G P+D+  D+   RGL  +D   F QA+E QR RAR  S G G+      +
Sbjct: 358 AAFRLYDTYGFPVDLTADVCRERGLK-VDEAGFEQAMEAQRRRARESS-GFGAD-----Y 410

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
            S+    GA+QF GYD                            + V A+ + G+ V+E 
Sbjct: 411 NSMIRVDGASQFSGYD-----------------------HEEQQATVTALFRDGQPVDEI 447

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G++  VV D+TPFY E+GGQ+GD G     G    ++D QK  + I  H   +  G+L
Sbjct: 448 HVGEEAVVVLDETPFYGESGGQVGDKGVLKTAGADFVVSDTQKYGQAI-GHQGKLSHGVL 506

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           + +  +   ID   R ++ +NHSATHLLH AL   LG HV+Q GS +    LRFD +H +
Sbjct: 507 KVKDRVDAQIDIARRNRIRLNHSATHLLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFE 566

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   +++ +ED VN  + +NLPV T +M  +DA   GA AL G KY+D VRV+++    
Sbjct: 567 AMKPEQIRVVEDLVNQQVRRNLPVQTEVMALDDAKEKGAMALFGEKYDDSVRVLTM---- 622

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G  S+ LCGGTH S TG+I L  I++ES   AGIRRIEA+TG+ A + L  Q++ L+ +
Sbjct: 623 -GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIATLHQQNDLLQDV 681

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHI 800
           A  +K    N+  +V  + +  R L+    + K Q   ++         K+  V  +   
Sbjct: 682 AQLVKGDNSNLTDKVRAVLDRTRALEKELQQLKDQQAAQESASLSSQAKKVNGVQLLVSQ 741

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +  V++K L++++D L+ ++ S II+L   + + K S++  VT+DL DR  A +L    A
Sbjct: 742 LDNVEAKMLRTMVDDLKNQLGSAIIVLATTA-DDKVSLIAGVTKDLTDRVKAGELIGHVA 800

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + + GG GGGRP MAQ+GG + +    A+  V +++
Sbjct: 801 QQV-GGKGGGRPDMAQAGGTDVSALPAALNSVEAWV 835


>gi|205830253|sp|B0KR43|SYA_PSEPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 874

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/897 (42%), Positives = 530/897 (59%), Gaps = 56/897 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  +  
Sbjct: 60  AVSSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF++L+ A+ +  G   +G    + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMG A+PEL   +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+E+F KTL++GL +L+  L+ L K +++ GDV FKLYDT+G P+D+  DI   R L
Sbjct: 358 LKAEEEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIAREREL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F + ++ QR RAR+ S           + SL +   AT+F+GYD         
Sbjct: 417 T-IDEAGFEREMDAQRERARSAS------AFGMDYNSLVKVDSATEFLGYDATE------ 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G+ V++   G++  VV D+TPFYAE+GGQ+GD
Sbjct: 464 -----------------AQGKIIALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG       R  + D  K   G F+HH +V  G L     +   +D   +   S+NHSAT
Sbjct: 507 TGFLQAGAARFDVRDTTK-TGGAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS +    LRFD +H + +   ++K +ED VN  + +N  V 
Sbjct: 566 HLLHEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVE 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + E A A GA AL G KY D VRV+S+    GG  S  LCGG H   TG+I L  I
Sbjct: 626 TELTDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE  + +G+RRIEA+TG  A ++L   +E++K  A  +K ++ N++ ++  + E  R+L
Sbjct: 682 ISEGGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQL 741

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + + +              ++     ++  +   D K L +++D L+ K+   +I
Sbjct: 742 EKQLEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +L G   E K  ++  VT+DL  +  A DL + +A  +GG GG GRP MAQ GG + 
Sbjct: 802 LL-GSEHEGKVVLVAGVTKDLSSQLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDV 856


>gi|15836729|ref|NP_297417.1| alanyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|9104908|gb|AAF82937.1|AE003866_2 alanyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 916

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/910 (41%), Positives = 553/910 (60%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 40  TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 99

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 100 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 159

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 160 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 219

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE IPGG PGS  E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 220 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 279

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N   + RVI DH R+ +FLI DG+LP+N
Sbjct: 280 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLRVIADHSRACAFLIVDGVLPSN 337

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 338 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 397

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG++ +D
Sbjct: 398 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 455

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           ++ F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 456 MVGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGLR----- 507

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 508 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 550

Query: 535 I-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +  DG+RL++TD QK       H A + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 551 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 610

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV Q GS + PD LRFD +H +PI +A++  IE  VND +  N  V+   
Sbjct: 611 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 670

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE
Sbjct: 671 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHINRTGDIGLFKIISE 724

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 725 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 784

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +     +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 785 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 844

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 845 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 903

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 904 LDGVATWVKQ 913


>gi|326566717|gb|EGE16856.1| alanyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
          Length = 887

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/909 (40%), Positives = 521/909 (57%), Gaps = 54/909 (5%)

Query: 12  LEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAG 71
           L FF    H  +PSSSLIP NDPTL+FTN+GM  FK+ F G EK  Y    + QKCVRAG
Sbjct: 8   LTFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSSQKCVRAG 67

Query: 72  GKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITV 129
           GKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   L + RLY+TV
Sbjct: 68  GKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPKDRLYVTV 127

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGEC 182
           Y  D+EAF +W K  GL  ++II I  N       DNFW M +TGPCGPC+EIF+D GE 
Sbjct: 128 YHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEIFYDHGEH 187

Query: 183 IPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG   E+G+RYIEIWN VFMQF +Q       LPK S+DTGMGLER++ ++Q   
Sbjct: 188 IWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERISAIMQGVH 247

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            NY+ D+F  L+  +  + G+  + +  N  + +V+ DH+RS +FLIADG++P+NEGRGY
Sbjct: 248 GNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIPSNEGRGY 307

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG T+     L+  L   MG AYP+L   +  IE+ +  E+E+F 
Sbjct: 308 VLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAILKEEEQFA 367

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL +GL LL   L  L + + L G+  FKLYDT+G P D+  DI+  +G+  ID   F 
Sbjct: 368 KTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT-IDEAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            ++ EQR+RAR        G     + +L +   AT+F+GY+ L                
Sbjct: 427 LSMAEQRTRAREA------GKFAMDYHALIQVDSATEFLGYERLDND------------- 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V  + Q G+ V+    G +  ++ D+TPFYAE+GGQ+G+ G    +  
Sbjct: 468 ----------STVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELGEISTESG 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D QK  + I  HH +V+ G +    S    +  Q R   + NHSATHLLH AL T
Sbjct: 518 VFDVLDTQKSGQAII-HHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHLLHAALRT 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG  VSQ GS ++ D LRFD ++ KP+T   +  IE  VN  I  N P    I++ + A
Sbjct: 577 ILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVEILDIDSA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
              GA  L G KY D VRV+S+    +DG   S  LCGG HV+ TG+I L  I+SE  I 
Sbjct: 637 KNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKIISEQGIS 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG  A +++   D++L  LA+  K  +  +  RV ++ ++ R L+    + 
Sbjct: 697 AGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLEKQIERL 756

Query: 778 KLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-- 830
             +      N    +   I     +   ++ +D+K L+++ D ++ K+  GI++L  I  
Sbjct: 757 NQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLADGIVILASIYT 816

Query: 831 -SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E K ++   V + L  +  A D+ +  ++ L GG GGG+P  AQ G  +     + +
Sbjct: 817 ADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGATDVANLPKLM 875

Query: 890 AGVASFLKK 898
            G+  ++ +
Sbjct: 876 TGLIDWIGE 884


>gi|317154429|ref|YP_004122477.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944680|gb|ADU63731.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 879

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/906 (41%), Positives = 524/906 (57%), Gaps = 40/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FLE+FQ+N H ++ SS LIP +DPTL+FTN+GMV FK +F GQEK  Y   
Sbjct: 1   MHAAEIRQRFLEYFQENNHAIVESSPLIPKDDPTLLFTNAGMVQFKRLFLGQEKREYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  L 
Sbjct: 61  TTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRYCWQFLTEELKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLYIT+Y +D+EA +LW+K++G+  ++I R+   DNFWSM +TGPCGPCSE+ FDQGE
Sbjct: 121 KDRLYITIYKDDDEAGELWQKVAGVPIERIYRLGEKDNFWSMGDTGPCGPCSEVHFDQGE 180

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V Q 
Sbjct: 181 HVGCGPECGIGKCDCDRYLEIWNLVFMQYDQAEDGTRTPLPRPSIDTGMGLERIAAVCQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ DLF+ +I+ + ++ G+KY  N       +VI DH R+ +FLI D +LP+NEGR
Sbjct: 241 VASNYETDLFQSIIRYTAELAGVKYRENQEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +L+G TEP +      +  +MG  + EL  +K  + E +R E+E 
Sbjct: 301 GYILRRLIRRACRFGKLMGLTEPFLWKTASKVVDDMGGHFSELRDSKEFMIEVVRGEEEG 360

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD+GL +L+  L+ L   K  I+ GD AF+LYDT+G P+DI++D+   +G++ +D 
Sbjct: 361 FAKTLDKGLDMLEAELAELTAAKAAIVPGDTAFRLYDTYGFPIDIVRDVAERQGMS-VDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  ++EQ+SR++A   G G      ++ +L E+   + F GY               
Sbjct: 420 PGFDALMQEQKSRSKAAWKGSGDKDVAAVFHTLLEQGITSGFTGY--------------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                  +     S I   +   G +VE   +G    VV   TPFY E+GGQ GDTG   
Sbjct: 465 -------ETMADQSEITHVLSPAGAVVERLAAGDTGWVVTRSTPFYGESGGQTGDTGEIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R  +TD  K ++ +  H   + +G L+   S+ LT+D   R     NH+ THLLH 
Sbjct: 518 ASSGRGAVTDTVKPSQSLTAHKVEMAQGELKPGNSVFLTVDRGQRLATMRNHTVTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H  Q GS + PD LRFD TH K +T  E+  +E  VN  I   +PV   +M+
Sbjct: 578 ALQKVLGDHARQAGSLVGPDRLRFDFTHIKGLTVEEIGRVETLVNQSILDAIPVSREVMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A   GA AL G KY D V V+ V        S   CGGTH+ +TG      IVSES 
Sbjct: 638 IEQAQTKGATALFGEKYGDTVSVIEVPG-----VSMEFCGGTHLDNTGIAGSFVIVSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA TG  A ++   +       +S LK     +  RV  + ++ + +     
Sbjct: 693 VAAGIRRIEAATGGNAIAYFNERRAAAAEASSMLKAQPAELPARVRALQQQVKDMAREMK 752

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + + +L             +I  V  ++  +   D   +   MDAL+ K+ S I+ LV  
Sbjct: 753 QLQTRLASGTGRDMLAEAQQIGGVTVLAVEVEAPDMNVMLEQMDALRSKLPSAIVCLVAG 812

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K SV + VT+DL  RF A +L +  A  +GGGGG GRP +A++GG + +    A+A
Sbjct: 813 HADGKVSVALSVTKDLHGRFKAGELIKPVAAEVGGGGG-GRPDLARAGGTDASGIKNALA 871

Query: 891 GVASFL 896
            +   +
Sbjct: 872 KLKELV 877


>gi|262195176|ref|YP_003266385.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262078523|gb|ACY14492.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 890

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/918 (41%), Positives = 546/918 (59%), Gaps = 56/918 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R++FL+FF   GHE + S+SL+P  DPTL+FTN+GMVPFK++FTG +       
Sbjct: 1   MKAAQVRSSFLDFFAARGHERVHSASLVPVGDPTLLFTNAGMVPFKDVFTGHQTRAIPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKCVRAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ + +D
Sbjct: 61  TSSQKCVRAGGKHNDLDQVGKTARHHTFFEMLGNFSFGDYFKKDAIAWAWELLTEVYGID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RL ITV+          D+EA  +W +++G+ +++II +  ++NFW M ETGP GPCS
Sbjct: 121 KERLVITVFAGDSELGVGADDEARAIWGEVTGMPSERIIGLGKSENFWMMGETGPMGPCS 180

Query: 174 EIFFDQGECIPGGLPGSSEEGE---RYIEIWNLVFMQFE-QQNKQERFILPKMSIDTGMG 229
           EI +  G   P  LPG+  +      ++EIWNLVFMQ+E ++       LP  SIDTG G
Sbjct: 181 EIHY-FGAGKPDALPGTDPDAPVWSGWLEIWNLVFMQYERREPGGALHKLPAPSIDTGAG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+ +VLQ  ++NYD DLF+ L+ ++ ++ G +Y  +G+   + RVI DH R+++FL+A
Sbjct: 240 LERVTSVLQGVSSNYDTDLFQPLLHSAAELCGKRYGEDGDADTSMRVIADHARATAFLVA 299

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P    + YVLRRI RRA+ + +LLG  EP M  +   +  EM  AYPEL +   +I
Sbjct: 300 DGVFPDKTDKEYVLRRIFRRAVRHGKLLGIEEPFMHRMCARVVEEMKDAYPELAERATVI 359

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E    E++RF  TLDRGL LL+     +   K   ++GD  F+LYDT+G P D+ + I 
Sbjct: 360 HEITLEEEKRFRATLDRGLNLLEEEFGRMQAAKSSTVSGDKVFQLYDTYGFPSDLTEIIA 419

Query: 406 CARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              G  GID   F + LE+ R R++ AHS G+G G   +++ +L  + GAT F+GY+   
Sbjct: 420 DEHGY-GIDHEGFREELEQARERSKAAHSTGVGEG---EVFKTLAGELGATSFLGYEGEG 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            S                      S  V A+V  GE VE A +G +V    DQTPFYAE+
Sbjct: 476 LSG---------------------SGQVMALVVDGERVERAEAGAQVAFACDQTPFYAES 514

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G A  + G R++I D +K +   FVH   V  G +     L   +D + R ++
Sbjct: 515 GGQIGDCGEARSEAGARVRIDDTRKPSGDTFVHIGEVLEGAIALGDQLGFEVDGERRARI 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL   LG HV+Q GS + PD LRFD  H  P++  + + +ED VN  I
Sbjct: 575 RANHSATHLLHLALKKTLGDHVAQKGSSVGPDRLRFDFAHFSPMSDEQTQQVEDWVNAEI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N   VT +M+  +A   GA A+ G KY D+VRVV +  E     S   CGGTHV   G
Sbjct: 635 RKNRDSVTDVMSLSEAKERGAVAMFGEKYGDKVRVVGIGSE-----SLEFCGGTHVHRAG 689

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  IVSESS+  G+RRIEA+TG  A  ++   + +L ++   LKV+   V GRV+++
Sbjct: 690 DIGLFKIVSESSVAQGVRRIEAVTGAGALEYVRRVEGELSAVGGRLKVAPLEVAGRVDKL 749

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE R  +   A+ K +L             +IA V  ++      D+K L++  D L+ 
Sbjct: 750 QEELRAREREVAELKAKLAAGGSRDLMSEVEEIAGVKVLAVATEVDDAKTLRTTGDTLRD 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++ SG+++L G+  E K ++L +V++DL  R +A  L +  A+ L GG GGGRP MAQ G
Sbjct: 810 RLGSGVLLLCGV-GEDKVALLAMVSKDLTKRVHAGKLLQAVAETL-GGRGGGRPDMAQGG 867

Query: 879 GPNGNKADQAIAGVASFL 896
           G + ++   A+    SFL
Sbjct: 868 GKDPSQVPAALERARSFL 885


>gi|320197699|gb|EFW72308.1| Alanyl-tRNA synthetase [Escherichia coli EC4100B]
          Length = 833

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/869 (44%), Positives = 538/869 (61%), Gaps = 56/869 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N   
Sbjct: 61  KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIWN+VFMQF +Q 
Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + 
Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   
Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYD
Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I        
Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ V+   +GQ+  
Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+   ++ 
Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQ 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E+
Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           +++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ 
Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  LK  
Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSK 807
             N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE   V+ K
Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGRP MAQ+GG +      A+A V  ++
Sbjct: 800 GGGRPDMAQAGGTDAAALPAALASVKGWV 828


>gi|325295645|ref|YP_004282159.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325066093|gb|ADY74100.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 879

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/906 (41%), Positives = 542/906 (59%), Gaps = 43/906 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL FF+   H  + SS LIP NDPTL+FTN+GMV FK+ F G+EKP ++  T
Sbjct: 5   TGKEIREAFLRFFEDKEHFRVKSSPLIPKNDPTLLFTNAGMVQFKDYFLGKEKPPFKRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK F L +
Sbjct: 65  SCQKCMRAGGKHNDLENVGKTGRHHTFFEMLGNFSFGDYFKKEAIEFAWELVTKVFKLPE 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY++VY++D+EAF++W K+ G+  +KI ++   DNFW+M +TGPCGPCSEI++D+GE 
Sbjct: 125 DRLYVSVYEKDDEAFEIWNKLIGIPENKIYKLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 184

Query: 183 IPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G        + +RY+EIWNLVFMQFE+    +   L   SIDTGMGLER+A+VLQ  
Sbjct: 185 FACGENCEIGKCDCDRYLEIWNLVFMQFERDESGKLTPLAHPSIDTGMGLERIASVLQNV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NY+ DL   L++ +  ++G  Y  +     + RVI DHLR+ +FLIADG+LP+NEGRG
Sbjct: 245 PSNYETDLLFPLVKWASDLSGTPYGKDEKSSTSMRVIADHLRALTFLIADGVLPSNEGRG 304

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + RLLG  +P +   +  +   MG  YPE+++   LI++    E+ERF
Sbjct: 305 YVLRRIIRRASRHGRLLGIDKPFLFEGVDEVLNIMGDTYPEIVENGRLIKKVTLKEEERF 364

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KTL+RGL +   ++  L     +I+ G+ AFKLYDT G PLD++ ++     L  +D+ 
Sbjct: 365 SKTLERGLYIFAEIIDKLRNEGKDIIPGEEAFKLYDTFGFPLDLILEVANDENLK-VDVS 423

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + L EQ+ RAR    G            L E+   + FIGYD L G           
Sbjct: 424 GFEKLLAEQKERARKAWKGGVQKVISPELQKLSEE-SPSIFIGYDHLEGI---------- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V  I++ G ++EEA  G++V V+ D+TPFY E GGQ+GDTG   G
Sbjct: 473 -------------GKVTGILKDGRLIEEAKEGEEVTVILDKTPFYPEKGGQVGDTGIIEG 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    ++ D Q   E +  H  +V++  ++    +   ++ + R+ +   H+ATHLLH A
Sbjct: 520 NNCYCEVLDTQNITENLIGHKVVVKKEKVKVGDIVNAIVNEERRKAIMRAHTATHLLHKA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS + PD LRFD TH +  T  EL++IE+ V + + +N PV    M+ 
Sbjct: 580 LREVLGNHVKQAGSLVLPDRLRFDFTHFEAPTEEELQTIEETVYNWVLKNYPVKIEEMSY 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++AI  GA AL G KY        V   D G  S  LCGGTHV  +G+I    ++SESSI
Sbjct: 640 DEAIERGAIALFGEKY-----GDVVRVVDVGGVSVELCGGTHVERSGDIGFFKLISESSI 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RRIEA+ G+ A  ++  ++  +K L S L+  +  ++ +VE++ EE +  +    +
Sbjct: 695 SSGTRRIEAVVGKEAFKYIEEKEALIKKLRSSLQSPEEQLLQKVEKLKEELKAKEKELER 754

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L   ++         I  +  ++  +     KEL  + D ++ K ++  +M+VGI 
Sbjct: 755 IKKKLATAEIDQIVEDAPIINGIKVVTAKLEGFGGKELAEIADVIRNKAKTAAVMIVGI- 813

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           K+ KAS+LI +T+DL DRF A ++ R  A +L  G GGGRP MAQ G  N +K ++A + 
Sbjct: 814 KDGKASLLIALTKDLTDRFKAGEIIREIAPILE-GRGGGRPDMAQGGVQNLSKLEEAFSE 872

Query: 892 VASFLK 897
                K
Sbjct: 873 FRKKFK 878


>gi|326339235|gb|EGD63050.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
          Length = 833

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/869 (44%), Positives = 538/869 (61%), Gaps = 56/869 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N   
Sbjct: 61  KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIWN+VFMQF +Q 
Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + 
Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   
Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYD
Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I        
Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ V+   +GQ+  
Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   +  G L+   ++ 
Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQ 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E+
Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           +++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ 
Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  LK  
Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSK 807
             N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  ++SE   V+ K
Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L  + A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGRP MAQ+GG +      A+A V  ++
Sbjct: 800 GGGRPDMAQAGGTDAAALPAALASVKGWV 828


>gi|294339360|emb|CAZ87716.1| alanyl-tRNA synthetase [Thiomonas sp. 3As]
          Length = 917

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/953 (39%), Positives = 534/953 (56%), Gaps = 96/953 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            NVS IR  FL +F+  G   + SSSL+P NDPTL+FTNSGMV FK++F GQ++  Y+  
Sbjct: 1   MNVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT  + L 
Sbjct: 61  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA  +W K  G+  ++IIRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQER----------------- 216
           IF+D G  I GG PGS E +G+RYIEIWNLVFMQFE+    E                  
Sbjct: 181 IFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFDTEDQATARKQAVEA 240

Query: 217 ---------------------FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
                                  LPK  +DTGMGLER+A VLQ   +NY+IDLF+ LI+A
Sbjct: 241 EGGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKA 300

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
           + + T     G+   + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ +   L
Sbjct: 301 AARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKL 358

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G  +P    ++P L  +MG+AYPEL + +  + E L++E+ RF +T++ G+ +LD  L+ 
Sbjct: 359 GVRQPFFYKMVPDLVAQMGAAYPELAEVQGRVAEVLQAEEARFFETIEHGMGVLDTELAA 418

Query: 376 LG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           L      +L G++AFKL+DT G PLD+ QD+    G+  +D  +F+ A+  QR +ARA  
Sbjct: 419 LRAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDAAMARQREQARAAG 477

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                    K+  +L      T+F GY+ L                          + V 
Sbjct: 478 K-------FKMQAALDYVGDKTRFDGYEHL----------------------LVKEARVV 508

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGI--RLQITDVQKKA 550
           A+ + G  V    +G    VV D+TPFYAE+GGQ+GD+G    GD    R  + D QK  
Sbjct: 509 ALYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCELRFVVHDTQKLQ 568

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +F HH  +E G L+    +   +D + R+ +  NHS THL+H AL  +LG HV Q GS
Sbjct: 569 ADVFGHHGTLESGSLKVGEIVAAQVDGERRQAVMRNHSVTHLMHKALRLVLGDHVQQKGS 628

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +  D  RFD  H  P++  E+  +E  VN+ I  N     R+M  ++A   GA  L G 
Sbjct: 629 LVDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGLGAMMLFGE 688

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           KY D VRV+ +        S  LCGGTHV+ TG+I L  IV E  + AGIRR+EAITG  
Sbjct: 689 KYGDTVRVLDIG------TSRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAITGLN 742

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786
           A + +  Q+  +  L+  LK        +VE++ E+ R+L+   A+ K Q          
Sbjct: 743 ALAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLAQLKAQQAAAQGDALV 802

Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                I   + +   +  +D+K L+  +D ++ K+++ +++L+   +  K  +   V+ D
Sbjct: 803 SQAITIGGTSVLLARMDGLDAKGLREAVDRIKSKLKT-VVVLLASREGDKVQLAAGVSAD 861

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + +  A DL   +A+ + GG GGGRP  A +GG    + D A+A   S L++
Sbjct: 862 RVGQIKAGDLVSAAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913


>gi|163794125|ref|ZP_02188098.1| Alanine--tRNA ligase [alpha proteobacterium BAL199]
 gi|159180739|gb|EDP65258.1| Alanine--tRNA ligase [alpha proteobacterium BAL199]
          Length = 889

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/904 (48%), Positives = 579/904 (64%), Gaps = 36/904 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+  + IR  FL++F  +GH  + SS L+P NDPTLMFT +GMV FKN+FTG EK  Y  
Sbjct: 1   MATTNDIRRVFLDYFAAHGHTAVESSPLVPRNDPTLMFTTAGMVQFKNVFTGAEKRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T++F L
Sbjct: 61  AATAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIEYAWNLITRDFAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDE+A  LW+KI+GL  D+IIRI T+DNFW+M +TGPCGPCSEIFFD G
Sbjct: 121 PKDRLLVTVYSEDEDAAALWRKIAGLPDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             I GG PGS  E+G+R++EIWNLVFMQFEQ  K ER  LP+ SIDTGMGLER+A VLQ 
Sbjct: 181 PHIAGGPPGSPDEDGDRFMEIWNLVFMQFEQITKDERRSLPRPSIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D  + LI+AS   +  + +G   V+HRV+ DHLR+S+FLIADG+LP+NEGRGY
Sbjct: 241 KHDNYDTDTMRALIEASAHASNTEPDGPFKVSHRVVADHLRASAFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A ++G TEPLM  LLP L  +MG AYPEL +A+ LI  TL+ E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHIMGCTEPLMHRLLPTLVRDMGGAYPELGRAQALITGTLQLEETRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL RGL  L+     LG  + L G+VAFKLYDT+G PLD+  DIL  +G   +D   F+
Sbjct: 361 DTLGRGLKHLEEATGKLGDSQALPGEVAFKLYDTYGFPLDLTADILRGQGRT-VDQAGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ QR+ AR    G G   T+ +WF ++EK GAT+F+GYD                  
Sbjct: 420 TAMDAQRAAARKAWTGSGEAATDAVWFEVREKTGATEFLGYDTTA--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---G 536
                       V A++  G+ V++A  G +V VV +QTPFY E+GGQ+GDTG      G
Sbjct: 465 --------AEGQVTALLVDGKPVQKAELGVEVLVVVNQTPFYGESGGQVGDTGTIRAIDG 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               + + D Q+K   +FVH  ++  G L    ++ LT++ + R +   NHSATHL+H A
Sbjct: 517 GTAVVAVVDTQRKLGDVFVHRGMLSGGALSVGDAVQLTVETERRDRTRANHSATHLMHEA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG HV+Q GS + P+ +RFD +H   I   +L  +E  VN  +  N  V TR+M  
Sbjct: 577 LRQRLGEHVAQKGSMVAPERMRFDFSHPASIAREDLAWVEAEVNRRVRGNSEVTTRLMTP 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGG----VHSSALCGGTHVSSTGEIMLLYIVS 712
           + AI  GA AL G KY D VRVVS+            S  LCGG HV  TG+I L  IV 
Sbjct: 637 QAAIDEGAMALFGEKYGDEVRVVSMGGSADKANRAAWSVELCGGIHVRRTGDIGLFKIVG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES++ AG+RRIEA+TG  A   +  ++  L   A+ LK +  ++  RV  + EE R+L+ 
Sbjct: 697 ESAVAAGVRRIEAVTGSGALDWIGAREAALGEAAAELKTTPEDLPARVHALVEERRRLER 756

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + + +L     +  ++  V  +   +  +  V ++ELK + DAL+K+I SG++ +V 
Sbjct: 757 ELVETRKKLAAGGGAAGEVKKVAGLTYAARALEGVPARELKGLADALKKEIGSGVVAVVS 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E KAS+++ VT DL  R +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ ++A  A+
Sbjct: 817 -GDEGKASLVVGVTADLTGRISAVDLVRVGSEALGGKGGGGRPDMAQAGGPDASQAQAAL 875

Query: 890 AGVA 893
             + 
Sbjct: 876 DAIE 879


>gi|294083659|ref|YP_003550416.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663231|gb|ADE38332.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 879

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/893 (49%), Positives = 584/893 (65%), Gaps = 37/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++V+ IR TFLE+F+ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MASVNDIRATFLEYFKDNGHQVVDSSPLVPQNDPTLMFTNAGMVQFKNLFTGLETRDYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+E+ L
Sbjct: 61  AATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +TVY ED+EA  LWKKI+GL+ D+IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DASKLLVTVYHEDDEAADLWKKIAGLNDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R+IEIWNLVFMQFEQ    ER  LPK SIDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAN-ERINLPKPSIDTGMGLERIAAVLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYDIDL + LIQAS +   +  +G++ V+HRV+ DHLR+SSFLIADG+LP+NEGRGY
Sbjct: 240 KHDNYDIDLMRALIQASAEAANVAADGDHNVSHRVVADHLRASSFLIADGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +   +G  +P M  L+PAL  EMG  YPEL +A+ LI ETL+ E+ RF 
Sbjct: 300 VLRRIMRRAMRHLHQMGCQDPTMWRLVPALVAEMGGHYPELGRAQALITETLKLEEGRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISF 418
           +TL RGL +L+  ++      +L+G  AFKLYDT+G PLD+ QD +  RG    +D+  F
Sbjct: 360 ETLGRGLRILNDEVAGKAAGGVLDGKTAFKLYDTYGFPLDLTQDFM--RGYEWDVDLDGF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N A+E Q++ AR    G G   TE IW  L ++ GAT+F+GY                  
Sbjct: 418 NSAMEAQKAAARKAWSGSGDAATETIWLDLGQQLGATEFLGYST---------------- 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                  +     V A+V+ G  +  A +G+ V+++ +QTPFYAE+GGQ+GDTG      
Sbjct: 462 -------DTAEGQVTALVRDGAAIASAAAGEDVQIITNQTPFYAESGGQVGDTGVISWAD 514

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + D  K   G+FVH A + +G L     + L ID   R +L  NHSATHLLH AL 
Sbjct: 515 GAADVADTFKTPMGMFVHRATITKGSLDVGNDVRLDIDVARRLRLRANHSATHLLHEALR 574

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H K +T  EL  ++  VN  +  N  V TRIM  E 
Sbjct: 575 EVLGEHVAQKGSMVGPDRLRFDFSHPKAMTEDELARVQAIVNSRVQMNSDVSTRIMTPEA 634

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHVSSTGEIMLLYIVSES 714
           AI  GA AL G KY D VRVV +  E         S  LCGGTHV+ TG+I +L ++ ES
Sbjct: 635 AIELGALALFGEKYGDEVRVVQMGGETDIKGRSAWSVELCGGTHVNRTGDISILKVIGES 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-- 772
           ++  G+RRIEA+T   A   +  ++  L   A  LK++   +  RV ++ E+ ++ +   
Sbjct: 695 AVAGGVRRIEAVTQAGAVEWIEHRERILSHTAELLKIAPEQLADRVAKLLEDNKRAERDI 754

Query: 773 --IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             +  K     +       +I  VNF+  ++ +  ++ELKS+ D +++ +++ +I LV  
Sbjct: 755 TMMRRKLAAGGDAGGAGSEQINGVNFVGRLMEDTPARELKSMADEMKQGLENAVICLVAT 814

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
               KAS+++ VT+DL+D  NAVDL R+ +  LGGGGGGGRP MAQ+GGPN +
Sbjct: 815 -DSGKASIVVAVTDDLVDAKNAVDLVRVGSAALGGGGGGGRPDMAQAGGPNAD 866


>gi|319794254|ref|YP_004155894.1| alanyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315596717|gb|ADU37783.1| alanyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 874

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 536/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G++K  Y    
Sbjct: 7   TVADIRKTFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRNYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++  A++LLTK + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY ED+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLWATVYIEDDEAYDIWTKEIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           FFD   E   G      E+G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 187 FFDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K  GNN  + RVI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNN--SLRVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG  +P    L+P L   MG AYP+L+  +  I +TL++E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGDAYPKLVADEKRITDTLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  + L GDVAFKL+DT+G PLD+  D+   RG++ +D
Sbjct: 365 EERFFETLANGMEILDAALA--GGAKTLPGDVAFKLHDTYGFPLDLSADVCRERGVS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+E+Q++  RA       G   K+  +++       F GY+ L           
Sbjct: 422 EAGFNVAMEKQKAAGRA-------GGKFKMDRNVEYTGAGNTFTGYEHLE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ V A+  +G  V E   GQ   VV D TPFY+E+GGQ+GD G  
Sbjct: 465 -------------ESAKVVALYFEGAAVNELKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +G++  + D QK    +F HH    +G L+   ++   +D   R     NHS THL+H
Sbjct: 512 SAEGVQFGVEDTQKIKADVFGHHGTQTQGTLKVGDAVKAAVDGARRNATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  D  RFD  H+ P+T  ++  IE  VN  I  N+    R+M
Sbjct: 572 KALREVLGDHVQQKGSLVDADKTRFDFAHNAPVTRDQILEIEKRVNAEILSNVATQARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  IVSE 
Sbjct: 632 DMESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVGRTGDIGLFKIVSEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
            + AG+RRIEA+TG  A ++L   +  ++S+A+ LK     + GR+ ++ E+ R L+   
Sbjct: 686 GVAAGVRRIEAVTGANALTYLQDLESTVQSVAATLKSPAAELQGRLSQVLEQVRALEREV 745

Query: 774 -HAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  D+N +  +   +   D+K L+  MD L+ K+++ II+L  
Sbjct: 746 GSLKGKLASSKGDELIAQAVDINGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAIIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D + +  A +L    A+ +GG GG G+  MA +GG +      A+
Sbjct: 806 VDGD-KVQIAAGVTADTVGKAKAGELVNFVAQQVGGKGG-GKADMAMAGGTDAAGVPAAL 863

Query: 890 AGVASFLKK 898
             V  ++ +
Sbjct: 864 KSVQGWVSE 872


>gi|160871945|ref|ZP_02062077.1| alanyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120744|gb|EDP46082.1| alanyl-tRNA synthetase [Rickettsiella grylli]
          Length = 871

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/902 (39%), Positives = 529/902 (58%), Gaps = 45/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N +++R  FL +F+K GH ++PS+SLIP +DP+L+FTN+GMVPFK++F G E+  Y   
Sbjct: 1   MNSNALRQLFLNYFKKQGHTIVPSASLIPAHDPSLLFTNAGMVPFKDVFLGLEQRSYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI L+W  +T+E  L 
Sbjct: 61  ASVQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAILLSWKFMTEELGLS 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ITV+ ED+EA  +W     ++  +  R    DNFWSM +TGPCGPCSEIF+D G 
Sbjct: 121 PEKLWITVFTEDDEAANIWLNEVKINPKRFSRCGRQDNFWSMGDTGPCGPCSEIFYDYGP 180

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PG S+  G+RY+EIWNLVFMQ+++    +   LPK S+DTGMGLER+A V+Q  
Sbjct: 181 GISGGAPGTSTASGDRYVEIWNLVFMQYQRSFDGKHIALPKPSVDTGMGLERLAAVMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           TNN+D DLF  LI+   +   +        + RVI DH+R+ +FLI+DG+ P NEGR YV
Sbjct: 241 TNNFDTDLFLPLIKIVAKEASLTDF--TTTSLRVIADHIRACAFLISDGVYPGNEGRSYV 298

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   +G   P    L+  L  +M  AYP L++ +  IE+ L  E+++F +
Sbjct: 299 LRRIIRRAVRHGHKIGLDRPFFYRLVRPLALQMQHAYPALVEKQKFIEKILLEEEQKFAR 358

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TL +GL L +  L  L   +   G VAF+LYDT+G P+D+  D+   RGL  ID+  F  
Sbjct: 359 TLTQGLKLFEQELDKLKDKKQFPGLVAFRLYDTYGFPVDLTADMARERGL-VIDMAGFTT 417

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++ Q+ +++  S    +            +  AT+F+GY     +              
Sbjct: 418 EMDAQKKKSKEASHFSTTPHVHSS------EKKATEFVGYKTREQADIP----------- 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                      +  ++   ++ EE   G++  VV  +TPFYAE+GGQ+GDTG  +    R
Sbjct: 461 -----------IIDLLDDKDLKEELAEGEEGFVVLTKTPFYAESGGQVGDTGYLVNATSR 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
             +    KK   + +H   + +G L+    +   +D + R   ++NHSATHLLH  L  I
Sbjct: 510 FFVITTLKKGS-LILHRGQLIKGHLKKGDKVKAEVDPKKRHATTLNHSATHLLHAVLREI 568

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG+ V Q GS + P+ LRFD ++S P+T  +LK IE+ VN  I  NLPVVT++M+ EDA 
Sbjct: 569 LGTQVMQKGSLVEPERLRFDFSYSSPLTCEQLKLIENRVNWQIRANLPVVTQVMSMEDAK 628

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY + VRV+++     G  S  LCGGTHVS TG+I L  I  ESS+  G+
Sbjct: 629 KAGALALFGEKYGNNVRVLTI-----GTFSKELCGGTHVSQTGDIGLFKITEESSVSTGV 683

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIHAKR 777
           RRI+A+TGQ A   +   ++++  LA     S+  V  +V    +  +  +K      + 
Sbjct: 684 RRIQALTGQYALDWVAALEDQMNQLAKLFHTSKDTVFEKVCLEVKTKQSLQKKIAALQQS 743

Query: 778 KLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            + +  E+L      I  +N +   ++ +DS  L+ ++D L+ K++  +I+L  I ++K 
Sbjct: 744 IVAMMGEELVSQALTIKGINLLISEMNGIDSAGLRFLVDQLKNKLKPAVIVLTSI-EQKN 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +++ VT++L+ +  A +LA   A  + GG GGGR   AQ+GG      +  +  V  +
Sbjct: 803 VQLVVGVTKELVGKIKANELAHSLALTM-GGRGGGRADFAQAGGGKPEALEATLKSVKHW 861

Query: 896 LK 897
           ++
Sbjct: 862 VE 863


>gi|332184146|gb|AEE26400.1| Alanyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 865

 Score =  922 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/900 (42%), Positives = 528/900 (58%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI + DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSTDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QV   +    N  + RVI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVINARDI--NSPSLRVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAVRHGNKLGANQIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L  D + +G+VAFKLYDT+G P D+  D+   +GL  +D   F 
Sbjct: 359 KTIENGIKIFDAEIENLKGDTV-SGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQVFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + +L      ++F GY  L                
Sbjct: 417 AQMQVQKQRSKEA------GKFNVDYNTLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I    ++V+         VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYHDSQLVDSITEEASAVVVLDKTPFYAESGGQVGDKGVLEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLVKGRLNVNDELTAQVSDQPRLATAANHSATHLLHKALKV 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSH  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 ILGSHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVATIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SES I +G
Sbjct: 627 KSLGAQALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +      AK K 
Sbjct: 682 IRRIEAVTADKAIRHTFTNENKIVAIKDSLKANDANLIDKLKSMLEQIKNQDKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L+  +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAMTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|154248002|ref|YP_001418960.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|205830288|sp|A7IMR0|SYA_XANP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154162087|gb|ABS69303.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 884

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/894 (49%), Positives = 595/894 (66%), Gaps = 34/894 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR++F+++F K GHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSSFIDYFVKEGHEAVASSPLVPQNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+T+ F+L
Sbjct: 61  AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTRTFEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL +TV+ EDEEA+ LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIFFD  
Sbjct: 121 PRDRLVVTVFSEDEEAYGLWKKIAGLSDDKIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                G      ++G+R+IEIWNLVFMQFEQ    ER  LP+ SIDTGMGLER++ VLQ 
Sbjct: 181 PNVPGGPPGSPDQDGDRFIEIWNLVFMQFEQLPGGERLALPRPSIDTGMGLERVSAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DL + LI    ++T +  +G    +HRVI DHLR+S FL ADG+LP+NEGRGY
Sbjct: 241 VHDNYDTDLMRALIAEVAELTSVNPDGPQKASHRVIADHLRASVFLTADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A+LLG  +PLM  L+P L  EMG AYPE+++A+ L EETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVPVLVREMGRAYPEIVRAESLAEETLLLEETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RGL +L+   + L       G+VAFKLYDT+G PLD+ QD L ARG++ +D  +F+
Sbjct: 361 RTLERGLSILEEESTGLTSGGQFPGEVAFKLYDTYGFPLDLTQDALRARGIS-VDTTAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++ ARA   G G   T+ +WFS++++ GAT+F+GY+                  
Sbjct: 420 AAMARQKAEARASWAGSGEAATDTLWFSVRDEVGATEFLGYET----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +V A+V+ G +V+   +G+K  V+ +QTPFYAE+GGQ+GD G   G+G 
Sbjct: 463 ------EKAEGVVAALVRDGAVVDSLAAGEKGLVILNQTPFYAESGGQVGDIGRVSGEGG 516

Query: 540 R-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              Q+   QKK   +FVH   VE G L+   +LVL +D+  R  +  NHSATHLLH AL 
Sbjct: 517 VAAQVVATQKKLGDLFVHEVKVETGTLKRGTALVLEVDHARRAAVRANHSATHLLHEALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS + PD LRFD +H KP++  EL  +E   N  + +N PV TRIM  +D
Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPLSGGELAEVETIANRFVLRNEPVETRIMAVDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           AI SGA AL G KY D VRVVS+  +DG    +S  LCGGTHV  TG+I L+ ++SES++
Sbjct: 637 AITSGARALFGEKYGDEVRVVSMGTDDGNGAPYSVELCGGTHVKRTGDIGLISVLSESAV 696

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIH 774
            +G+RRIEA+T   AR HL      L   A+ LK     V  RV  +       + +L  
Sbjct: 697 ASGVRRIEALTADAARRHLNAASAALAGTAAVLKAPVAEVEARVATLVEERRRLERELAE 756

Query: 775 AKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A++KL +         +   + D+  ++  +  ++ K+LK ++D  +K+I SG++ +VG+
Sbjct: 757 ARKKLAMGGGGEASGDAVRTVGDIKLLARRVEGIEIKDLKGLVDEGKKQIGSGVVAIVGV 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + + KA +++ VT DL+ RF+AV L R+ ++ LGG GGGGRP MAQ+GGP+G K
Sbjct: 817 TSDGKAGIVVGVTADLIARFDAVALVRVGSEALGGKGGGGRPDMAQAGGPDGAK 870


>gi|256003587|ref|ZP_05428576.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|255992378|gb|EEU02471.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|316939793|gb|ADU73827.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 880

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 549/906 (60%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y       V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K   ++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++E ++ AR               +S  +K   T+F+GY                 
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGY----------------- 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   +  ++ V  I+++ ++V+EA  G  V V+ D+TPFYAE+GGQ+GD G    +
Sbjct: 463 ------TESEATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEAE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH AL
Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ +
Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES + 
Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q    + 
Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        +I  V  ++    + D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++++ T+D++ +  +A ++ + +AKV GGGGG GRP MAQ+GG + +K D+A+  
Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGGG-GRPDMAQAGGKDVSKIDEALKQ 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 AVKVIE 875


>gi|281416686|ref|ZP_06247706.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|281408088|gb|EFB38346.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20]
          Length = 880

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 550/906 (60%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y       V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K   ++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++E ++ AR               +S  +K   T+F+GY                 
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGY----------------- 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   +  ++ V  I+++ ++V+EA  G+ V V+ D+TPFYAE+GGQ+GD G    +
Sbjct: 463 ------TESEATARVLYIIKEDQVVDEAQKGESVTVILDRTPFYAESGGQVGDKGLIEAE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH AL
Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ +
Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES + 
Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q    + 
Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        +I  V  ++    + D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++++ T+D++ +  +A ++ + +AKV GGGGG GRP MAQ+GG + +K D+A+  
Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGGG-GRPDMAQAGGKDVSKIDEALKQ 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 AVKVIE 875


>gi|323699014|ref|ZP_08110926.1| alanyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458946|gb|EGB14811.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 879

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/906 (40%), Positives = 538/906 (59%), Gaps = 40/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLE+F++NGH ++ SS L P +DP+L+FTN+GMV FK +F GQEK  Y   
Sbjct: 1   MKANEIRQRFLEYFERNGHTIVESSPLTPKDDPSLLFTNAGMVQFKKLFLGQEKRDYIRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  LD
Sbjct: 61  TTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFCWQFLTEELKLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLYIT+Y +D+EA +LW+K++G+  ++I R+   DNFWSM +TGPCGPCSE+ +DQGE
Sbjct: 121 KSRLYITIYKDDDEAGELWRKVAGVPEERIYRLGEKDNFWSMGDTGPCGPCSEVHYDQGE 180

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +R++EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V+Q 
Sbjct: 181 EVGCGPNCGIGKCDCDRFLEIWNLVFMQYDQAEDGTRTNLPRPSIDTGMGLERIAAVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NY+ DLF+ +I+ +  + G+KY  +       +VI DH R+ +FLI D +LP+NEGR
Sbjct: 241 VHSNYETDLFQSIIKYTADLAGVKYRESEEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +L+G T   +      +  +MG  Y EL + +  + E +R E+E 
Sbjct: 301 GYILRRLIRRAYRFGKLMGLTGTFLWKTASKVIDDMGGHYKELEETRNFMVEVVRGEEES 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD+GL +L+  L+ L K    I+ G+  FKLYDT+G P+DI++D+   +G+ G+D 
Sbjct: 361 FAKTLDKGLEMLEEELAELKKAGAAIVPGETTFKLYDTYGFPIDIVRDVAEQQGM-GVDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ+ R++A   G G      ++ +L E+   ++F GY               
Sbjct: 420 AEFDKFMQEQKQRSKAAWKGSGEKDVASVFQTLLEQDVTSEFSGY--------------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                  +     S+I   +  +GE+V+E  +G+   +V + TPFY E+GGQ+GDTG   
Sbjct: 465 -------ETMADQSAIAYVLTPEGEVVDELKAGESGWLVAEVTPFYGESGGQVGDTGAIA 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  + D  K ++ +  H  +V  G+L+   +  L +D   R     NH++THLLH 
Sbjct: 518 ARNGKADVLDTVKPSKNLTAHKIVVSEGVLKPGDAAFLNVDRSQRLATMRNHTSTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H  Q GS + PD LRFD TH K ++  E+  +E  VN  I + +PV   +M+
Sbjct: 578 ALQKVLGDHAKQAGSLVGPDRLRFDFTHIKGLSPEEIAEVEKLVNQAIFEAIPVTREVMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A GA AL G KY D V V+ V        S   CGGTH+ +TG      I SES 
Sbjct: 638 IEAAQAKGATALFGEKYGDTVSVIEVPG-----VSMEFCGGTHLDNTGIAGSFVITSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773
           + AGIRRIEA TG  A + L  + E      + LK    ++  +V ++ ++ + +  ++ 
Sbjct: 693 VAAGIRRIEAATGHNAVAWLNERREAASEAGAMLKAQPADLPKKVRDLQQQVKDMNREMK 752

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLVGI 830
             + KL          ++ ++N +  +  +VD      +   MDAL+ K+ SG+I L+  
Sbjct: 753 SLQAKLASGAGRDMMSEVEELNGVKVLAVKVDAPNMGVMLEQMDALRSKLPSGVICLIAP 812

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            ++ K SV + VT+DL  RF A DL +  A  +GGGGG GRP +A++GG N    D+A+A
Sbjct: 813 HEDGKVSVALSVTKDLHSRFKAGDLIKPVAGEVGGGGG-GRPDLARAGGSNPEGIDKALA 871

Query: 891 GVASFL 896
            +   +
Sbjct: 872 KLRELI 877


>gi|125975678|ref|YP_001039588.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|205830037|sp|A3DKB6|SYA_CLOTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125715903|gb|ABN54395.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
          Length = 880

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 549/906 (60%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK  AI  AW+  T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y++D+EAF++W K  GL  ++I+R+  ++NFW    TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R+IE+WNLVF QF ++       L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++    ++TG++Y       V+ RVI DH+RS++ +I+DG++P+NEGRGY
Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG   P +  +   +  E   AYPEL +    I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIKESKGAYPELAERAENIKKVIRIEEEKFE 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GLV+L   +    K   ++++GDV F+L+ T+G P+D+ ++I    GL G+D   
Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++E ++ AR               +S  +K   T+F+GY                 
Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKLDKSVKTEFLGY----------------- 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   +  ++ V  I+++ ++V+EA  G  V V+ D+TPFYAE+GGQ+GD G    +
Sbjct: 463 ------TESEATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEAE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R+++ D +K  +G ++H   +E G LR  M +  TID + R  ++ NH+ THLLH AL
Sbjct: 517 GARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV+Q GS + PD LRFD TH   +T  E+KS+ED VN+ I +++ V  R M+ +
Sbjct: 577 RNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY D VRVV +     G +S  LCGGTH++ T +   + IVSES + 
Sbjct: 637 EARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG+ A  H   +++ L+ +A  LK +  + V R+E +  E +  Q    + 
Sbjct: 692 SGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L        +I  V  ++    + D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTGF 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++++ T+D++ +  +A ++ + +AKV GGGGG GRP MAQ+GG + +K D+A+  
Sbjct: 811 GGKVSLVVMATKDVVAKGIHAGNIIKEAAKVAGGGGG-GRPDMAQAGGKDVSKIDEALKQ 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 AVKVIE 875


>gi|317122060|ref|YP_004102063.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
 gi|315592040|gb|ADU51336.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885]
          Length = 905

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/894 (41%), Positives = 533/894 (59%), Gaps = 44/894 (4%)

Query: 18  NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDL 77
           +GH ++PSSSLIP +DPTL+FTN+GMV FK++FTG+EK  Y+  TT QKC+RAGGKHNDL
Sbjct: 32  HGHTIVPSSSLIPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATTAQKCMRAGGKHNDL 91

Query: 78  DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAF 137
           +NVG+T RHHTFFEMLGNFSFG YFK  AI  AW  LT+E  L + RL+ T+Y ED+EAF
Sbjct: 92  ENVGKTARHHTFFEMLGNFSFGDYFKRDAIHFAWTFLTEELGLPKERLWATIYREDDEAF 151

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEG 194
           +LW++++G+ A +I+R+   DNFW+M +TGPCGPCSEI +D+GE            + + 
Sbjct: 152 QLWQEVTGIPASRIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEFRCEAETCAIGACDC 211

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
           +R++EIWNLVFMQF +        LP+ SIDTGMGLER+A+V+Q   +N+D DLF+ LI+
Sbjct: 212 DRWLEIWNLVFMQFNRDETGRMEPLPRPSIDTGMGLERIASVMQGVASNFDTDLFRPLIR 271

Query: 255 ASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
           A E++TG +Y EG      RVI DH R+ +FLIA+G+LP+NEGRG+VLRRI+RRA+ + R
Sbjct: 272 AVEELTGRRYEEGEPGFPFRVIADHARACTFLIAEGVLPSNEGRGHVLRRILRRAVRFGR 331

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           +LG  EP +  L+  +   MG AYPE+ Q    +   +R E+ERF +TLD+G+ +L  V+
Sbjct: 332 ILGIQEPFLYRLVDTVGEVMGGAYPEVRQRADYVARVIRGEEERFFRTLDQGMAILAEVI 391

Query: 374 S--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  D ++ G+ AF LYDT+G PLD+  D     GL  +D   F QA+  QR RARA
Sbjct: 392 ERARARGDGVIRGEEAFVLYDTYGFPLDLTVDAAEEAGLR-VDREGFEQAMAVQRQRARA 450

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                                 AT F GY+ L                            
Sbjct: 451 AREVAEGWDPGSPLALALADEPATVFTGYERLED-----------------------EGT 487

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V+ +V+  + VE A +G++V VV D+TPFYAE GGQ+GDTG     G RL++ D Q    
Sbjct: 488 VRLLVRGDQPVERARAGEEVGVVLDRTPFYAERGGQVGDTGWLEAPGARLEVLDTQPLPG 547

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G F+H A V  G +     +   +D   R  +  NH+ATHLLH AL  +LG HV+Q GS 
Sbjct: 548 GRFLHKARVVEGTVTVGDRVQGRVDAARRAAIMRNHTATHLLHAALKRVLGDHVNQAGSL 607

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           + PD LRFD TH +  T  +L++IED +N +I   +PV     + E+A+ +GA AL G K
Sbjct: 608 VAPDRLRFDFTHFEAPTPDQLRAIEDEINGVILAGVPVRWYWTSLEEALEAGAMALFGEK 667

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y   VRVV +     G +S  LCGGTHV+ST +I L    +E S+ AG+RR+EA+TG  +
Sbjct: 668 YGREVRVVQI-----GDYSLELCGGTHVASTSDIGLFKFTAEGSVAAGVRRVEAVTGWSS 722

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH 789
             +L  ++  L+ LA  L+V   ++  R+E + E +R L  QL   + +L     D    
Sbjct: 723 LEYLRQREAVLQRLAGTLRVPVDDLPERLEALVEAHRDLERQLRQLRGRLARQAADGLLA 782

Query: 790 KIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +      +  I+ E+   D++ L+   D L+++     ++L   S + +A ++  +T   
Sbjct: 783 EAPVAAGVRVIVGELPVDDAEVLRETADYLRQRAGEAAVLLGARSGD-RALLVAAITPGA 841

Query: 847 LDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS-FLKK 898
             R  +A  L    A+ +GGGGG GRP +AQ+GG    +  +A+      +L++
Sbjct: 842 QQRGLHAGRLVGDVARRVGGGGG-GRPDLAQAGGREPGRLAEALDYGRRLWLEQ 894


>gi|302037043|ref|YP_003797365.1| alanyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300605107|emb|CBK41440.1| Alanyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 876

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/903 (42%), Positives = 544/903 (60%), Gaps = 41/903 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ +R  F+++F++ GH  +PS+ LIP  DPTL+FTN+GM  FK +F G+E   Y    
Sbjct: 4   SVNDLRRAFIQYFEQQGHRAVPSAPLIPQADPTLLFTNAGMNQFKRVFLGEETRAYNRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+  W+ LT    L +
Sbjct: 64  TVQKCLRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKEEAIRFGWEFLTSVVGLSK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++IT++ ED+EA +LW+KI G+S  +I+R    DNFW MA+TGPCGPCSE+ FDQG  
Sbjct: 124 DRMWITIFREDDEADRLWQKI-GVSPSRIVRCGEKDNFWQMADTGPCGPCSELHFDQGPS 182

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           +PG     + EG+R IEIWNLVFMQF + +      LPK SIDTGMGLER+  V Q + +
Sbjct: 183 VPGDA-TPNGEGDRVIEIWNLVFMQFNRDSAGTLNPLPKPSIDTGMGLERLTAVAQGRLS 241

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NYD DLF  L+ A     G +Y        + RVI DHLR+ +FL+ADG+LP+NEGRGYV
Sbjct: 242 NYDSDLFAPLLAAIGTRAGAQYGAVEQADRSMRVIADHLRAITFLMADGVLPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA  + RLLG TEP +  L   +  +MG AY EL  A   + E  R E+ERF  
Sbjct: 302 LRRILRRAARHGRLLGITEPFLHELTATVVEQMGEAYHELRPAAGTVAEATRGEEERFIA 361

Query: 361 TLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLD+GL +L+ +L+        +L+G   FKLYDT+G P+D++ +    + +  +D   F
Sbjct: 362 TLDQGLPILNDMLTKVRASGQNMLSGTEIFKLYDTYGFPMDLIAEACREQDIR-LDETGF 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+EEQR+RAR  + G  S T       +  + G T F+GYD L               
Sbjct: 421 EAAIEEQRTRARK-TGGFESETARPALSEVAARVGTTAFVGYDHLNS------------- 466

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       +V+A+++   +V+EA  G ++EVV D TPFYAE GGQ GD G   G  
Sbjct: 467 ----------EGVVQALLKGDRLVKEAREGDEIEVVLDVTPFYAEGGGQAGDQGLLTGPD 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R++I +  +    + VH  +V  G +R    L L+++ + R+  + NH+ATHL+H AL 
Sbjct: 517 GRVEIRETTRPVPTLIVHKGVVTSGSIREGERLQLSVNRRTRQDAARNHTATHLVHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS + P+ LRFD  H + + S ++  IE  VN+ + Q+ PV T +M  ++
Sbjct: 577 DLLGPHVKQYGSLVAPNRLRFDFAHFRSLASRDIDEIESIVNEQVRQDQPVQTDVMGVQE 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A GA A  G KY D+VRVV +        S  LCGGTH   TGEI L  IVSES + A
Sbjct: 637 AVAGGALAFFGDKYGDQVRVVHI-----DTFSKELCGGTHCRRTGEIGLFRIVSESGVAA 691

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIE +TG  A   L   +  ++ L+  LKV+ G VV R  ++ E+ ++ +   A+ K
Sbjct: 692 GVRRIECLTGSGALDSLKRLEADVRELSDLLKVAPGEVVSRTRKLSEQLKEKERELAEVK 751

Query: 779 LQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L++      D    +I  V   +     +D   ++++ D L+ K++SG++ L G + + K
Sbjct: 752 LKMASTSSGDSQAREIKGVQVHAQRTDGLDVNGMRALADQLRDKLRSGVVAL-GAANDGK 810

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+L+VVT+DL+ R  A DL +  A  + GG GGGRP MAQ+GG N      A+  V   
Sbjct: 811 VSLLVVVTKDLVGRLKAGDLIKEMATEV-GGTGGGRPEMAQAGGKNPEGLGTALEKVFGL 869

Query: 896 LKK 898
           ++K
Sbjct: 870 VQK 872


>gi|254450715|ref|ZP_05064152.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198265121|gb|EDY89391.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 884

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/893 (48%), Positives = 567/893 (63%), Gaps = 40/893 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++S IR+TFL+++ + GH ++ SS L+P NDPTLMFTNSGMV FKN FTG E   YQ 
Sbjct: 1   MTSLSDIRSTFLDYYARQGHAVVASSPLVPRNDPTLMFTNSGMVQFKNRFTGVESGDYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA+ LWKKI G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKKI-GVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNVVFMQNEQFDDGTLKPLDMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DLF+ LI+AS   T     G+  V+HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 GHDNYETDLFRALIEASAHATSTDPFGDQNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A +LG  +P+M  L+PAL  +MG+AYPEL   + LIE+TL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHILGSKDPVMHRLVPALVQQMGAAYPELGLGQTLIEDTLLNEEVRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L  + +   L+GD AFKLYDT G PLD+ QD L  +G  G+D   F 
Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGDTAFKLYDTFGFPLDLTQDALREQG-RGVDTDGFK 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G+     IWF + +K G+T+F+GY+                  
Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIADKQGSTEFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + AIV   + V+ A  G  V ++F+QTPFY E+GGQ+GD G    D  
Sbjct: 462 ------ETAQGQLLAIVSDTDPVDSASKGDCVALIFNQTPFYGESGGQVGDEGTVKTDTG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +ITD +K   G+F+H A V  G +       L +D   R  +  NHSATHLL+ AL  
Sbjct: 516 TARITDTKKVV-GLFLHMAEVTSGTITKGQGSELVVDPARRAAIRANHSATHLLNEALRV 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD TH+  +TSAEL  +E +VN  + QN  V TRIM  +DA
Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTGAMTSAELTQVEQDVNRYVQQNTAVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA AL G KY D VRVVS+         +G  +S  LCGGTHV+ TG+I +  + SE
Sbjct: 635 RAIGAQALFGEKYGDEVRVVSMGRAKTGKGAEGLTYSLELCGGTHVARTGDIGMFALTSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            +   G+RRIEA+TGQ A ++L  +DE L  +   LK    +V  RV+ + +E + L   
Sbjct: 695 RASSDGVRRIEALTGQTAMTYLRTRDETLGDVEGMLKAKGADVASRVKALMDERKALANE 754

Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            A+ + ++ +      E      I  + F + ++  +  K+L +++D ++  + SG I+L
Sbjct: 755 VAQLRREVAMGGGAKDEGPQAKTINGIAFKAQVMQGITGKDLPAMIDEMKSVMGSGAILL 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +    + KA+V   VT DL+D+ +AVDL R +   LGG GGGGRP MAQ GG 
Sbjct: 815 IA-DGDGKAAVAAGVTADLVDKVSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 866


>gi|94987623|ref|YP_595556.1| alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|205830129|sp|Q1MP42|SYA_LAWIP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94731872|emb|CAJ55235.1| Alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 884

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/908 (41%), Positives = 526/908 (57%), Gaps = 37/908 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M  V+ IR  FL +F+   H+ +PSSSLIP +DP+L+FTN+GMV FK +FTGQE   Y  
Sbjct: 1   MLTVNDIRQKFLGYFKNYNHQEIPSSSLIPRDDPSLLFTNAGMVQFKKVFTGQETRNYLR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW  +T+E +L
Sbjct: 61  ATTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQFAWAFITEELNL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            +  LYIT+Y +D++A+ +W    G+   +I R+   DNFWSM +TGPCGPCSEI FDQG
Sbjct: 121 SKEFLYITIYKDDDDAYDIWVNTIGVEPSRIYRMGEKDNFWSMGDTGPCGPCSEIHFDQG 180

Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G      S + +R++EIWNLVFMQ+EQ    ER ILPK SIDTGMGLER+  + Q
Sbjct: 181 ETFCCGDNCGIGSCDCDRFLEIWNLVFMQYEQLPSGERVILPKPSIDTGMGLERIVAICQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +K++NYD DLF+ +IQ    + G+ Y+      +  RVI DH R+ +F+IADGILP+NEG
Sbjct: 241 QKSSNYDTDLFQPIIQYMASIAGVHYKKHEETDIALRVIADHSRAIAFMIADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + +G  +P +   +  +   MG  Y EL      +   +  E+E
Sbjct: 301 RGYVLRRLIRRAFRFGKQIGMNQPFLYKTVNKVVELMGDIYTELYSRSEFMSRVVFDEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TLD+GL+LL+  L+ L +     L GD+AFKLYDT+G PLDI+ DI   +  A +D
Sbjct: 361 RFSITLDKGLILLEAELNALKEKNTKELPGDIAFKLYDTYGFPLDIINDIASKKHFA-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F   ++EQ+ RAR+   G G    E  + +L E    ++FIGY+ L           
Sbjct: 420 EANFQHLMQEQKERARSQWKGSGEKRIEACFQTLLEDGMQSEFIGYENL----------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +G   IV  +   G  +EE  +     V+ D TPFY  +GGQ GD G  
Sbjct: 469 -----------SGTGRIVALLDIDGLPIEELPTKSSGYVITDMTPFYGTSGGQTGDIGIL 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                + Q+ D  K A  + VH   V  G +  +   +L +    R   + NH+ TH+L 
Sbjct: 518 STITGKTQVVDTLKPATNLIVHVVTVTSGTILLDQEALLVVSESERLDTARNHTCTHILQ 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  ILG HV Q GS ++P  LRFD TH  P+T  E+ +IE  VN II  NLP+    M
Sbjct: 578 SVLQKILGDHVRQAGSLVSPTRLRFDFTHIAPLTEEEIHAIELQVNTIIMANLPLRVEFM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +++ A+  GA AL   KY + VRVV++  E     S  LCGGTH++STG+     IVSE+
Sbjct: 638 DQQSALEKGAMALFEEKYGNIVRVVTIGSE-NQTASIELCGGTHLTSTGQAGCFIIVSET 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-- 772
            I AG+RRIEAITG+   +++    ++L + A+ LK     VV +V  I  E + LQ   
Sbjct: 697 GIAAGVRRIEAITGRNTLAYIKEYQKELSTTAAILKTKPEKVVEKVTSILSENKNLQKTV 756

Query: 773 -IHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                  L    + L  +  +I +++ ++  +     K L+ +MD ++ K+ SGI+ L  
Sbjct: 757 DTLESSSLSNQGKHLLDNLTRINNIDVLTANLKNFSLKALRDIMDDIRSKLSSGIVCLAS 816

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +  K  +L+ V++DL   F A +L +     +  G GGGRP  AQ+GG N +   +  
Sbjct: 817 T-EGTKVHLLLYVSKDLHHNFTASELIKKIVVPIH-GAGGGRPDQAQAGGTNPSGLSETF 874

Query: 890 AGVASFLK 897
             + + L+
Sbjct: 875 ELLKNILE 882


>gi|258541879|ref|YP_003187312.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632957|dbj|BAH98932.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636014|dbj|BAI01983.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639069|dbj|BAI05031.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642123|dbj|BAI08078.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645178|dbj|BAI11126.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648233|dbj|BAI14174.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651286|dbj|BAI17220.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654277|dbj|BAI20204.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 881

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/903 (47%), Positives = 575/903 (63%), Gaps = 31/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IRT FLE+F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 1   MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW+L+TK F+L
Sbjct: 61  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TV+ EDE+A  LW+ I+GL   +IIRI T+DNFW M +TGPCGPCSEIFFD  
Sbjct: 121 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R++EIWNLVFMQ+ +     R  LP+ SIDTG+GLER A ++Q 
Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D F  LIQAS  +T    +G    +HRV+ DHLRS++FLIADG+LP+ +GRGY
Sbjct: 241 KRDNYDTDTFVALIQASADLTHQAVDGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G TEP    LLPAL  +MG AYPEL+  + LI ET+R E+ERF 
Sbjct: 301 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL+   SHL     L GDVAF+LYDT G PLD+ QD L   G   +D+  F 
Sbjct: 361 AMLDRGLHLLEEEKSHLASGASLPGDVAFRLYDTFGFPLDLTQDALRGSG-HDVDVKGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+  QR RARA   G G    E IWF  ++K+GA++F+GY                   
Sbjct: 420 EAMAVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGYST----------------- 462

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V+A++   E ++EA  G +V V+ +QTPFY E+GGQ GDTG     G+
Sbjct: 463 ------EQADGEVQAVIAGNEFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +TD QKKA  + VH+  V  G LR  M++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 517 KVAVTDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS  T + LRFDV+  +PIT  EL +IE  VN+ I  N  VVTR M  ++A
Sbjct: 577 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRDNSQVVTRSMTPDEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA GA AL G KY D VRVVS+    ++    S  LCGGTHV+ TG+I    IVSES + 
Sbjct: 637 IAEGATALFGEKYGDEVRVVSMGAGADNKSPWSMELCGGTHVNRTGDIGQFRIVSESGVS 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+ G+ A+   +  +++L  +A+ +KVS  +   R+  + EE R+++   A  
Sbjct: 697 AGVRRIEAVAGKAAQDLTVSNEQRLTQMAAMMKVSVADAPERLAAVLEERRQMEKQIAHL 756

Query: 778 KLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + QL   NV      KI      +  + E   +ELK + + + K+  + +++L+  + + 
Sbjct: 757 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 815

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K SV+  V  +++++ +AV L R ++  +GG GGGGR  MAQ+GGP+   AD A A V  
Sbjct: 816 KGSVVAAVGPEMVEKVDAVALVRAASAAMGGKGGGGRRDMAQAGGPDAQAADTAFAAVRE 875

Query: 895 FLK 897
            LK
Sbjct: 876 ALK 878


>gi|212704759|ref|ZP_03312887.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098]
 gi|212671822|gb|EEB32305.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098]
          Length = 889

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/913 (41%), Positives = 534/913 (58%), Gaps = 43/913 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +LEFF +NGH++LPS  LIP NDPTL+FTN+GMV FK  F G+E      
Sbjct: 1   MLTAKEIRRRYLEFFARNGHDILPSGPLIPPNDPTLLFTNAGMVQFKKFFLGEEVRDVPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  AW  +T+E +L
Sbjct: 61  VTTSQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAITWAWKFVTEELEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL++TV+ ED+EA  +W++++GL A++I+R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKERLWVTVFREDDEAAAIWQEVAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVF QF+Q     R  L + +IDTGMGLER+A V Q
Sbjct: 181 EDMACGPDCGIGKCDCDRFLEIWNLVFTQFDQHADGTRDRLARPNIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE------GNNIVNHRVIVDHLRSSSFLIADGILP 292
            K +N+D DLF+ +IQ + ++ G+KY        +     RVI DH R+++FLIADG LP
Sbjct: 241 GKRSNFDCDLFQDIIQYAAELAGVKYSFSAPDTNDVDTALRVIADHARAAAFLIADGTLP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA+ +A L+G  EP +  +   +   MG  YPEL +    I   + 
Sbjct: 301 SNESRGYVLRRLIRRALRFATLMGVHEPFLYKVARKVTEIMGEDYPELTEHADFIARAVH 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL +GL LL+  L+ L K  D+++ G+  FKL DT+G PLDI+ D+   RG 
Sbjct: 361 EEEQRFSLTLGKGLALLEDQLAELEKAGDKVIPGEFCFKLSDTYGFPLDIITDVSEKRGF 420

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           + +D+  F   + EQR RAR      G     G+   ++  L +    + F GY  L   
Sbjct: 421 S-VDVAGFEAHMAEQRRRARESQKKSGLLGQDGSGSSLFQQLADDGLQSVFTGYSGL--- 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              NG   IV  + + G  VEE  +G+K  VV +QTPFY E+GG
Sbjct: 477 -------------------NGQGRIVALLDESGLSVEELPAGRKGYVVTNQTPFYGESGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q GDTG   G     ++ D QK A  + VH+  VE+G+LR +  + L+++   R   + N
Sbjct: 518 QAGDTGRMEGPDGAARVLDTQKPAPTLIVHNIEVEQGLLRIDQEVALSVEEDARMATARN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THLLH AL ++LG+HV Q GS +    LRFD +H   +   EL ++E  VN  I  +
Sbjct: 578 HSCTHLLHAALRSVLGTHVKQAGSLVNSQRLRFDFSHIAALPPEELAAVERQVNRAIMAD 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            PV T+ M  ++A+AS A AL   KY D VRVVS+  +D    S  LCGGTH+S TG+  
Sbjct: 638 YPVCTKEMKHDEAVASVAMALFNEKYGDTVRVVSMG-DDAHTESVELCGGTHLSHTGQAG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              IVSES + AG+RRIEA+TG  A    + Q  +L  L++ LK   G +  RV+ +  +
Sbjct: 697 SFLIVSESGVAAGVRRIEAVTGWNAYDLAVAQRAELHDLSALLKAKPGQLAERVQALHSD 756

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSG 823
            +KL+    K             K  +VN +  +   +  V  K L+ +MD ++ +I SG
Sbjct: 757 VKKLRKASEKAAASPATGADLVQKATEVNGVKLLTAKLDGVPVKALRDIMDDVRSRIPSG 816

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +  L  +  E K  +L+ V++DL  RF A  L +  A    GG GGGRP +AQ+GG   +
Sbjct: 817 VACLATVEGE-KVGLLLYVSKDLHGRFTAPALIKDVAAPC-GGSGGGRPDLAQAGGTKAD 874

Query: 884 KADQAIAGVASFL 896
             + A   +   +
Sbjct: 875 GVEAAFDVLRDKI 887


>gi|91204886|ref|YP_537241.1| alanyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122426110|sp|Q1RKG2|SYA_RICBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91068430|gb|ABE04152.1| Alanyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 877

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/901 (46%), Positives = 566/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR+ F+ +F+ N H  + SS LIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEIRSKFISYFKANNHTHVSSSPLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYDKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY TVY  D+EA   WKKI+G S D+IIRI TNDNFWSM + GPCGPCSEIF+D GE 
Sbjct: 125 DKLYATVYHTDDEAASYWKKIAGFSDDRIIRIKTNDNFWSMGDLGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ NK  R  LPK SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQINKDTRIDLPKKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K E     ++RVI DHLR+ SFLIADG++P++EGRGYVL
Sbjct: 245 NNYDIDLFQEIISFTENILKVKVEAEAKFSYRVIADHLRACSFLIADGVVPSSEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHILGSKEPLMYKLLPKLVDLMGNTYPELKRAESFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL     +L     L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F Q 
Sbjct: 365 LERGLKLLSEETENLNAGGRLSGEVAFKLYDTYGFPLDLTEDILKNRNIA-VDHQGFEQQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+  AR   LG G   T+++WF +K KYG+T+F+GY+L                   
Sbjct: 424 MLEQKECARKSWLGSGESKTDQLWFDIKAKYGSTEFLGYNL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEADGKIVALIKDNALVNDISEIDTQFLLIANQTPFYGESGGQMGDIGVIKTQNCE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  ++++G + T+ +   +ID + R+ L I+HSATHLLH  L  I
Sbjct: 521 IEVIDTLKYLGFIIVHKCVLKKGKVITDENANFSIDVKYRQNLRIHHSATHLLHAVLHQI 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD++H K +T  E+  IED VN+II  N  V T +M+ EDA+
Sbjct: 581 LGKHVTQKGSLVATSYLRFDISHPKALTPEEIVLIEDKVNEIIRDNHEVDTTLMSTEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AGI
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRHTGDIGCFKITSESAIAAGI 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  ++  LK++ + LK ++  +V +V  I E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLIREKEGLLKNIENSLKTNKNELVSKVNNILERNKELEKELEKTYLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    KI ++  +   +  +D+K L+   + L KK++  +++ VG +   K
Sbjct: 756 SLDLSVEQIEKQAEKIKEIKLIYCHVENLDNKILRQAAENLTKKVEDLVVVYVG-NNSSK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + ++  + D+FNA  +A+  +  LGG GGGG+P +AQ+GG +  K  +    + S 
Sbjct: 815 LSITVGISRAITDKFNAGFIAKELSLFLGGSGGGGQPSIAQAGGSDLAKLPKVKDQLQSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|114566020|ref|YP_753174.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318869|sp|Q0AZQ1|SYA_SYNWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|114336955|gb|ABI67803.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 880

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/910 (41%), Positives = 546/910 (60%), Gaps = 45/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR TFLE+F++ GH ++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MWSSAEIRKTFLEYFEERGHSVVESSSLVPVNDPTLLFTNAGMNQFKDVFLGLDKRKYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 61  ATSSQKCVRAGGKHNDLDTVGRTPRHHTFFEMLGNFSFGDYFKREAIGYAWEFLTEVVGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y +D+EA  LW +ISG+   +I+R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 PEEKLWVTIYQDDDEAADLWPEISGIDPGRIVRLGEKDNFWSMGDTGPCGPCSEILYDRG 180

Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                G P       + +R++EIWNLVFMQF +    E   LP+ SIDTGMGLER++++L
Sbjct: 181 IEYSCGAPDCGIGVCDCDRWLEIWNLVFMQFNRDESGEMTPLPRPSIDTGMGLERLSSIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           Q   +N+D DLF  +I+  E++TG  YE G      RVI DH R+ SFLIADG+LP+N+G
Sbjct: 241 QGVDSNFDTDLFIPIIKRIEELTGKAYEQGERGFPFRVIADHSRACSFLIADGVLPSNDG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ + R LG     +   +  +C  M  AYPEL++ +  I+E +R E+E
Sbjct: 301 RGYVLRRILRRALRFGRFLGIEGSFLYKNVDVVCDIMQEAYPELLEKQDFIKEVIRLEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF  TL+ GL   + ++    +  D ++ G+ AF LYDT+G PLD+ +D+        +D
Sbjct: 361 RFLLTLNDGLKKAEEIMERARQRGDNVIPGEEAFMLYDTYGFPLDLTEDMAEENQFT-LD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++++EEQR RAR  + G      E++          + F GY+  R          
Sbjct: 420 KAGFDRSMEEQRQRARQANKGEDLLGQERLLSEKLAGIAPSSFTGYENSRD--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S++ AI++  E++++A++G++V ++  +TPFYAE+GGQ+ D G  
Sbjct: 471 --------------ESVLLAIIKGSELMDKALNGEEVILITARTPFYAESGGQVADCGII 516

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G    L++ DV KK     +H+ IVE G+L T   + L +D   R   + NH+ATHLLH
Sbjct: 517 KGQEGLLRVQDV-KKLSAWILHYGIVE-GVLTTGEGVSLQLDDPARMDTARNHTATHLLH 574

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H  Q GS + P  LRFD +H K ++S EL  IE  VN+ I +  PV T + 
Sbjct: 575 RALREVLGEHAQQKGSLVEPARLRFDFSHLKALSSEELSRIEQMVNEAIWKLYPVTTTVT 634

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
               A   GA AL G KY + VRVV V       +SS LCGGTHV +TG+I L  I  E 
Sbjct: 635 ALGQAREMGAMALFGEKYGEEVRVVQV-----DTYSSELCGGTHVQNTGQIGLFKITGEG 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
           SI +G+RRIEAITG  A  ++   +++LK  AS L+ S   +  R+E +    ++   ++
Sbjct: 690 SIGSGLRRIEAITGSYALEYIKQLEDELKKAASALRSSPLELAKRIENLNNSLKEKDKEI 749

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
            +  ++L  +  D   +K   +N    +I EV   D   L+   + L+ K+   I+ML  
Sbjct: 750 ENLLQRLSRSSSDELVNKAFQLNDAWILIEEVDIEDPGSLRQNAEMLKDKLGRAIVMLAS 809

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I  E K S +  V++DLL+   +A  +   +A+V GGGGG GRP MAQ+GG + +K  +A
Sbjct: 810 IKGE-KVSFVCFVSKDLLEQGLHAGKIVAAAAQVAGGGGG-GRPDMAQAGGRDKSKISEA 867

Query: 889 IAGVASFLKK 898
           +A     +KK
Sbjct: 868 LAEARKMVKK 877


>gi|126735784|ref|ZP_01751529.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126714971|gb|EBA11837.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 885

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/892 (48%), Positives = 566/892 (63%), Gaps = 41/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++++ IR+TFL +F K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E   Y  
Sbjct: 1   MTSLADIRSTFLNYFGKQGHAIVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFAWELLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL +TVY  D+EA  +WKK++GL  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ +      L   SIDTGMGLER+  +LQ 
Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFDDGSLKPLEMQSIDTGMGLERIGALLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD DL + LI+AS   T    +G    +HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 241 KHDNYDTDLMRALIEASADATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A  LG  +P+M  L+PAL  +MG+AYPEL Q + LIEETL +E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHQLGGKDPVMHRLVPALVQQMGAAYPELGQGQRLIEETLLNEEVRFK 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRGL LLD  L +L  D  L G  AFKLYDT+G PLD+ QD L  +G   +D   F+
Sbjct: 361 QTLDRGLKLLDEELQNLPDDAALPGTAAFKLYDTYGFPLDLTQDALREKG-REVDTDGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+++ARA   G G      IWF++ ++ GAT F+GYD L                
Sbjct: 420 AAMAEQKAKARAAWSGTGEAADSAIWFNITDESGATDFLGYDTL---------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + A+V  G+  + A     V++V +QTPFYAEAGGQ+GD G    +  
Sbjct: 464 -------TAEGQIMALVVDGDRADHA--DGAVQIVLNQTPFYAEAGGQVGDAGTLRTETG 514

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + +ITD  KK   I VH A V  G L       L +D   R  +  NHSATHLL+ AL  
Sbjct: 515 KAEITDT-KKFGEIHVHFAKVTEGHLHKGQGAELAVDPVRRANIQANHSATHLLNEALRA 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H++Q GS   PD LRFD +H+K +  AEL  I+ +VN II QN PV TRIM  +DA
Sbjct: 574 VLGDHIAQRGSLNGPDRLRFDFSHTKALNDAELAQIDRDVNAIIRQNSPVETRIMTPDDA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712
              GA AL G KY D VRVVS+  ++G         +S  LCGGTHV   GEI     + 
Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGRQEGSGKGMGGNTYSLELCGGTHVKQLGEIGAFVTLG 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S+  AG+RRIEA+TGQ A  HL  +++ L + A+ LK     +V R++    + ++   
Sbjct: 694 DSASSAGVRRIEALTGQAALDHLRDREKILFAAAAELKTPIDRLVSRIKGESFKLKEALN 753

Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +A+ + +L       +      I  V F + ++S V  K+L +++D ++  ++SG ++L
Sbjct: 754 ENAQLRRELAMGGGAKDAAPSEVINGVAFQAQVLSGVTGKDLPALIDEMKAAMESGAVLL 813

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +      KA+V + VT DL+DR +AVD+ R +   LGG GGGGR  MAQ GG
Sbjct: 814 IA-DAGGKAAVAVGVTADLIDRVSAVDILRAATPELGGKGGGGRADMAQGGG 864


>gi|226311489|ref|YP_002771383.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094437|dbj|BAH42879.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 882

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/916 (40%), Positives = 530/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FF + GH + PS+ L+P +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKKLTGNQIRQMFLDFFVEKGHRIEPSAPLVPIDDPSLLWINSGVATLKKYFDGRIIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVGRT RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRITNSQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGEYFKEEAIEWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +T++ EDEEAF+LW K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPELLSVTIHPEDEEAFELWNKKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAFGNDPSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q   NN++ DL   LI+ + +++G+KY+      V  +VI DH R+  F I DG 
Sbjct: 234 MTSVIQGVDNNFETDLLFPLIEKTTEISGVKYKTSPEMDVALKVIADHARTVVFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+   + LG  +P +  L   + T MG  YPE++Q +  IE+ 
Sbjct: 294 LPSNEGRGYVIRRLLRRAVRMGKKLGVEKPFLYSLTETVGTMMGEFYPEVVQKRAFIEKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +TL+ GL +L  ++          L+G   FK+YDT+G P+D+ +D    +
Sbjct: 354 IRAEEERFHETLNDGLAILSDMVKAAKDSGKTQLSGQDVFKMYDTYGFPVDLTEDFADEQ 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F++A+EEQR RARA    + S   +     L +    +QF+GY  L     
Sbjct: 414 GLT-VDRDGFDKAMEEQRERARAARQDVDSMQIQG--GPLSDLTVTSQFVGYTEL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               +  V+AI+   ++VEEA  GQ V+VV  QTPFYAE+GGQ+
Sbjct: 466 ------------------VATGKVEAIILDNQLVEEAEEGQTVQVVLSQTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I D ++ ++TDVQK   G  VH  IVE G LR    +   ++ + R  ++ NH+
Sbjct: 508 NDEGFLISDIVKARVTDVQKGPMGQNVHSVIVEAGTLRKGDDVRAEVNREARLAITQNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS + P+ LRFD TH   IT  EL+ IE  VN+ +  NL 
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVAPERLRFDFTHISSITPEELERIEAIVNEKVWANLG 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V        +A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L 
Sbjct: 628 VEISNKPLAEAKAMGAMALFGEKYGDVVRVVKV-----GEYSLELCGGCHVNNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            +VSES I AG RRIEA+TG+ A   L  Q   LK +A  LK         RVE + ++ 
Sbjct: 683 KLVSESGIGAGTRRIEAVTGRGAYQFLNQQFTTLKEVAQALKAPVLAEAPARVEGLQQQL 742

Query: 768 RKLQLIHAKRKLQL-NVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +++Q  +   + +L N+E         ++  +N ++  +S VD   L+ ++D L+ K+ S
Sbjct: 743 KEVQRENESLRAKLGNIEAASLTDKLQQVDGMNVLAARVSAVDMDNLRGMVDELKNKLGS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +I+L  +  + K +++  VT+DL+D   +A  + +  A   GGGGG GRP MAQ+GG +
Sbjct: 803 AVIVLGAVDGD-KVNLVAGVTKDLMDQGIHAGKIIKEVATRCGGGGG-GRPDMAQAGGKD 860

Query: 882 GNKADQAIAGVASFLK 897
            +K  +A+  V  F+K
Sbjct: 861 PSKLQEALDAVVDFVK 876


>gi|225848695|ref|YP_002728858.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644297|gb|ACN99347.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 875

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 544/905 (60%), Gaps = 41/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                 IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+ 
Sbjct: 3   FMAADEIRESFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QK  R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+  WD LT    +
Sbjct: 63  AASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFTWDYLTNYLKI 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q +L ++V++ED+EAF++W K+ GL  +KI R+   DNFWSM +TGPCGP SEI++D+G
Sbjct: 123 PQEKLLVSVFEEDDEAFEIWNKVIGLPEEKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRG 182

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E       GS E+  RY+EIWNLVFMQ+ +        LP  SIDTGMGLER+A+V+Q+ 
Sbjct: 183 EKFGNPEFGSDED-FRYLEIWNLVFMQYNRDESGNLTPLPNPSIDTGMGLERIASVIQQV 241

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NYD DLFK +I+ +E++ G  Y  N  + V  RVI DHLR+ +FLI+DG+LP+NEGRG
Sbjct: 242 DSNYDTDLFKPIIRFAEEIAGKTYGKNEKDDVAMRVIADHLRAITFLISDGVLPSNEGRG 301

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ Y R LG   P +   +  +  +M +AYPEL+  +  I++  +SE+E+F
Sbjct: 302 YVLRRILRRALRYGRNLGIDRPFLYEGVDVVIDKMKNAYPELVPNRNYIKKITKSEEEKF 361

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KTL R + +L  ++    K+  + L G+  FKLYDT+G P+D++QDIL    +   +I 
Sbjct: 362 IKTLRRSMDILYQMIETAKKEGRKFLTGEEVFKLYDTYGFPIDLLQDILRDESMT-FNIK 420

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + + EQ+ R+R       +   + I+  LK +    +FIGY+ L             
Sbjct: 421 EFEELILEQKERSRKA-FKTTAKQVKPIYLQLKSRLPENEFIGYNTL------------- 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       SS V AIV++ + V +A  G++VE++ D TPFY E GGQ+GD G   G
Sbjct: 467 ---------ISESSKVLAIVKEDQTVSQAKEGEEVEIILDITPFYPEKGGQVGDRGVIEG 517

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    ++ D Q   EG+ +H   +  G ++    +   +D + R  +  +H+ATHLLH A
Sbjct: 518 ENFLAEVIDTQTPTEGLILHKVKILFGTVKEGEFVRAKVDKERRENIMRHHTATHLLHSA 577

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILG HV Q GS ++ + LRFD TH + ++  E+K IE+ VN  I +N  VV + M+ 
Sbjct: 578 LRNILGDHVKQAGSLVSDEYLRFDFTHFESLSDEEIKMIEEFVNREIMKNEEVVCQEMSY 637

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A+ SGA A+   KY D VRV+S         S  LCGGTHV  TG+I    I+SE ++
Sbjct: 638 EEALNSGAIAIFEEKYGDVVRVISAGV------SKELCGGTHVKRTGDIGYFKILSEYAV 691

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774
            +G RRIEA+ G RA    + +   LK L+  L V +  ++ RV ++  + ++   +L +
Sbjct: 692 SSGTRRIEAVAGIRAVEQGLKEHFLLKDLSRLLTVKEDELIDRVVKLQNQLKEKERELEN 751

Query: 775 AKRKLQLNV--EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K+K  L+   + L+  +  D       I  V   EL+ + D +++K+   +++LV   K
Sbjct: 752 LKKKAALDKLNQTLNIIEKEDYKVAYGEIENVSPNELREIADNIKQKLGKAVVLLVSKDK 811

Query: 833 EK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           EK K +++ +V++DL DR+ A ++ +  A ++  G GGG+P  AQ GG N  K  Q +  
Sbjct: 812 EKSKVNIVALVSKDLTDRYKASEILKKLAPIVE-GSGGGKPDFAQGGGTNLEKVPQLLQE 870

Query: 892 VASFL 896
             +F+
Sbjct: 871 FKNFI 875


>gi|238897262|ref|YP_002922939.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465017|gb|ACQ66791.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 875

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/910 (43%), Positives = 548/910 (60%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++ + IR  FL+FF+  GH+++ SSSLIP +DPTL+FTN+GM PFKNIF G + P +   
Sbjct: 3   NSTADIRQKFLDFFKSKGHQVVSSSSLIPHHDPTLLFTNAGMNPFKNIFLGIQDPDFSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI  AW+LLT  + F 
Sbjct: 63  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIYFAWELLTGSEWFH 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RLY+TVY  D+EA+ +W    G+  ++IIRI  N       DNFW M ETGPCGPC
Sbjct: 123 LPKDRLYVTVYSTDDEAYNIWADEIGIPRERIIRIGDNKGAAFCSDNFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G+ + GGLPGS  EEG+RYIEIWN+VFMQF +        LPK S+DTGMGLE
Sbjct: 183 SEIFYDHGDHLWGGLPGSPEEEGDRYIEIWNIVFMQFNRLADGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA VLQ  ++NY+IDLF+ LI   ++VTG   + N   + RVI DH+R+ +FLI DG+ 
Sbjct: 243 RMAAVLQNVSSNYEIDLFRDLISGVKKVTGATDDSN--PSLRVIADHIRACAFLIFDGVR 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +P    LL +L   M     +L   +++IE+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAIRHGNKLGVKKPFFYQLLTSLIGVMKPITDQLKHHQVMIEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E F  TL+RGL LLD  L HL K + L G+ AF LYDT+G PLD+  D+   R L 
Sbjct: 361 KTEEELFSHTLERGLSLLDKKLDHL-KGDTLEGETAFLLYDTYGFPLDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID ++F+Q + EQR+RAR  S           +         T+F GY+ L+       
Sbjct: 420 -IDEVTFHQKMSEQRARARQAS------AFSTDYNKFIRVAHHTEFCGYEQLQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            ++++KA+  +GE + E  +GQ+  V+ D+TPFYAE+GGQ+GD 
Sbjct: 466 ----------------QTTVIKALFFRGEEINEIHAGQEALVILDKTPFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          ++D QK  + I VH     +G LR    +   ++ + R  +  NHSATH
Sbjct: 510 GYLKSTTAHFMVSDTQKYGQAI-VHLGQPSKGSLRISDHIQACVNNKVRDHIRSNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV Q GS +     RFD +H K +T  E++++E  VN  I QN  + T
Sbjct: 569 LLHAALRQVLGKHVVQKGSLVNEKCCRFDFSHFKMMTPDEIENVESLVNQQIRQNHLIET 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +IM+ EDA   GA AL G KY D+VRV+S+     G  S  LCGGTH   TG+I L +I 
Sbjct: 629 QIMSLEDAKKKGATALFGEKYEDQVRVLSM-----GDFSIELCGGTHARRTGDIGLFHIT 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS  AGIRRIEAITG+ A + L  Q   L+ LA  LK  +  ++ R+  I +  + L+
Sbjct: 684 SESSTAAGIRRIEAITGEEANALLCQQRNVLQDLARLLKSDEKGLIERIGIIIDRNKVLE 743

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K Q  ++       +  +I ++  +   +  V+   L+ ++D L+ ++ S +I+
Sbjct: 744 KKLQHFKDQEILQKTSLLLKNVKQIKEIKILIAQLDAVEPILLRRMIDDLKNQLGSAVIL 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  ++K  K S +  VT++L  +  A DL    A  + GG GGGR  MAQ+GG N N   
Sbjct: 804 LANVTKN-KISFIAGVTKNLTQQIKADDLIHYIAPKI-GGKGGGRADMAQAGGTNINSLA 861

Query: 887 QAIAGVASFL 896
             +A    ++
Sbjct: 862 TVLAEAEKWI 871


>gi|218885980|ref|YP_002435301.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756934|gb|ACL07833.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 879

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/905 (42%), Positives = 518/905 (57%), Gaps = 41/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLEFFQ  GHE++ SSSL+P +DP+L+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MITANEIRRRFLEFFQSQGHEIVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRGYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT++  L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEDLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+EA  LW   + + A++I R+   DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PKERLYATVFRDDDEARDLWLAHTDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +RY+EIWNLVFMQ++Q     R  LPK SIDTGMGLER+A V Q
Sbjct: 181 EHMTCGPDCGIGKCDCDRYLEIWNLVFMQYDQAADGTRTALPKPSIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF+ +IQ +  + G+ Y  N+      RVI DH RS +F+I DGILP+NEG
Sbjct: 241 GVYSNFDTDLFQAIIQYTCGIAGVSYRANDETDTALRVIADHSRSMAFMITDGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RL+G T   +      +   MG  YPEL      +   +R E+E
Sbjct: 301 RGYVLRRLIRRAYRFGRLIGQTGTFLHKTALKVVEVMGDDYPELRGNADFMARVVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TLD+GL LL+  L  L       + GDVAFKLYDT+G PLDI+ DI   RG   +D
Sbjct: 361 RFNRTLDKGLALLEEELESLRGAGSTRVAGDVAFKLYDTYGFPLDIVNDIAEKRGFT-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   + EQ+ RA+A   G G       + +L E+   ++FIGYD L G         
Sbjct: 420 EEGFRTLMAEQKERAKAAWKGSGESDIASRFHALLEEGLRSEFIGYDHLSGD-------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S +V  +   G   E    G K  +V  +TPFY  +GGQ GD G  
Sbjct: 472 --------------SRVVALLDATGLPSEGLPKGAKGYLVATRTPFYGASGGQTGDPGSI 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                + ++ D  K +  + VH      G +  +  + L ++   R   + NH+ THLLH
Sbjct: 518 TSPSGKARVLDTLKPSPELTVHQIETVDGEILPDQEVHLQVEEDERVASARNHTCTHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + PD LRFD TH   +T  E+ ++E  VN +I  NLP+ T  M
Sbjct: 578 AALRRVLGDHVKQAGSLVAPDRLRFDFTHIAAMTPEEIAAVEREVNRVILANLPLETDHM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A+  GA AL G KY D VRVV++  E     S  LCGGTH+ +TG+  L  I+SE 
Sbjct: 638 AYDAALTRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLILSEG 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEAITG  A   +M Q  +L  +A  LK   G +V RVE + ++ + L+   
Sbjct: 693 GVAAGVRRIEAITGWNALRMVMDQRAELGQVAGLLKARSGEIVPRVEALQKDVKSLRKDL 752

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K   Q              +I  V  ++  +   + K L+ +MD ++ K+ SGI  L  
Sbjct: 753 EKASSQATSGQGRNIMDELAEINGVKVLAAKVEVPNVKALRDLMDDVRSKLPSGIACLAA 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + K S+++ V++DL DRF A  L +  A  +GG GG GRP MAQ+GG N    D+A 
Sbjct: 813 PDGD-KVSLIVAVSKDLHDRFTAPALIKAVAAAVGGSGG-GRPDMAQAGGTNPAGIDEAF 870

Query: 890 AGVAS 894
             +  
Sbjct: 871 DILRK 875


>gi|217969991|ref|YP_002355225.1| alanyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|217507318|gb|ACK54329.1| alanyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 873

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/911 (41%), Positives = 531/911 (58%), Gaps = 57/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-AEIRDAFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVFKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY ED+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKDKLWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+RYIEIWN VFMQF +  +     LPK S+DTGMGLER
Sbjct: 180 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ    NY+IDLF+ LI+A+ + T       +  + +V+ DH+R+ SFLIADG++P
Sbjct: 240 ISAVLQHVHANYEIDLFQALIKAAARETCSA--DMDSPSLKVLADHIRACSFLIADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        ++P L  EMGSAYPEL   +  I + LR
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGSAYPELKDGERRIMDVLR 357

Query: 353 SEDERFGKTLDRGLVLL--DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E+ERF  T++ G+ ++  +         ++ +GD AFKL+DT G PLD+  DI   R +
Sbjct: 358 QEEERFFATIENGMAIVEAELAAMEAAGKKVFDGDTAFKLHDTFGFPLDLTADICREREV 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D ++F+ A+  Q+ +ARA           K+  +L+     T F GY LL       
Sbjct: 418 T-VDALAFDAAMARQKEQARAAGK-------FKMAANLEYDGPETTFHGYTLLE------ 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A+ + G  V E + G+   VV D TPFYAE+GGQ+GD
Sbjct: 464 -----------------EKGNILALYKDGVPVNELLEGEMGVVVLDHTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G          + D QK    +F HH +V  G L     +V  +D   R   + NHS T
Sbjct: 507 RGELRAAAGIFGVEDTQKIQAAVFGHHGVVRTGKLAVGQGVVARVDVAARAATARNHSVT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG+HV Q GS + PD  RFD  H+ P+++ E++ +E+ VN  I  N    
Sbjct: 567 HLMHKALREVLGAHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNREILANAATQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +M  E A  SGA  L G KY D VRV+S+        S  LCGGTHV+ TG+I L  I
Sbjct: 627 AEVMALEAAQKSGAMMLFGEKYADEVRVLSIG------TSKELCGGTHVARTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V E  + AGIRR+EAITG+ A  +   Q+ +++ +++ LKV    V  RV  I +  R L
Sbjct: 681 VGEGGVAAGIRRVEAITGENALRYAQEQERRVQGMSALLKVQPDEVAERVAGILDNVRAL 740

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A+ K +L             +I  +  ++ ++   D+  L+  MD L+ K++S  I
Sbjct: 741 EKELARLKSKLAASQGDELVSQAVEIKGIRVLAALLEGADAPTLRDTMDKLKDKLKSAAI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  ++ + K S++  VT D   +  A +L    A+ + GG GGGRP MAQ+GG      
Sbjct: 801 VLAAVA-DGKVSLIAGVTADHTAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPENL 858

Query: 886 DQAIAGVASFL 896
             A+AGV  ++
Sbjct: 859 AAALAGVKDWV 869


>gi|329114349|ref|ZP_08243111.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696425|gb|EGE48104.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 898

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/903 (47%), Positives = 574/903 (63%), Gaps = 31/903 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IRT FLE+F  NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE   Y  
Sbjct: 18  MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK  AI+ AW+L+TK F+L
Sbjct: 78  ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 137

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + +L +TV+ EDE+A  LW+ I+GL   +IIRI T+DNFW M +TGPCGPCSEIFFD  
Sbjct: 138 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 197

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R++EIWNLVFMQ+ +     R  LP+ SIDTG+GLER A ++Q 
Sbjct: 198 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 257

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NYD D F  LIQAS  +T    +G    +HRV+ DHLRS++FLIADG+LP+ +GRGY
Sbjct: 258 KRDNYDTDTFVALIQASADLTHQAADGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 317

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  ++G TEP    LLPAL  +MG AYPEL+  + LI ET+R E+ERF 
Sbjct: 318 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 377

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL+   SHL     L GDVAF+LYDT G PLD+ QD L   G   +D+  F 
Sbjct: 378 AMLDRGLHLLEEEKSHLASGAPLPGDVAFRLYDTFGFPLDLTQDALRGSG-HDVDVKGFE 436

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR RARA   G G    E IWF  ++K+GA++F+GY                   
Sbjct: 437 DAMSVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGYST----------------- 479

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       V+A++     ++EA  G +V V+ +QTPFY E+GGQ GDTG     G+
Sbjct: 480 ------EQADGEVQAVIAGNAFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 533

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ ITD QKKA  + VH+  V  G LR  M++  T+D+  R  +  +HSATHLLH AL  
Sbjct: 534 KVAITDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 593

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS  T + LRFDV+  +PIT  EL +IE  VN+ I +N  VVTR M  ++A
Sbjct: 594 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRENSQVVTRSMTPDEA 653

Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           IA GA AL G KY D VRVVS+    ++    S  LCGGTHV+ TG+I    IVSES + 
Sbjct: 654 IAEGATALFGEKYGDEVRVVSMGAGADNKAPWSMELCGGTHVNRTGDIGQFRIVSESGVS 713

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+ G+ A+   +  +++L  +A+ +KVS  +   R+  + EE R+++   A  
Sbjct: 714 AGVRRIEAVAGKAAQDLTVSNEQRLTQMATMMKVSVADAPERLAAVLEERRQMEKQIAHL 773

Query: 778 KLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + QL   NV      KI      +  + E   +ELK + + + K+  + +++L+  + + 
Sbjct: 774 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 832

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K SV+  V  +++++ +AV L R ++  +GG GGGGR  MAQ+GGP+   AD A A V  
Sbjct: 833 KGSVVAAVGPEMVEKVDAVALVRTASAAMGGKGGGGRRDMAQAGGPDAQAADAAFAAVRE 892

Query: 895 FLK 897
            LK
Sbjct: 893 ALK 895


>gi|90416725|ref|ZP_01224655.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90331478|gb|EAS46714.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 864

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/902 (42%), Positives = 549/902 (60%), Gaps = 48/902 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL ++    H ++PSSSL+P NDPTL+FTN+GMV FK++F G EK  Y  
Sbjct: 1   MKS-ADIRDAFLNYYASKQHSIVPSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRDYNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT+   L
Sbjct: 60  AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEFLTEVLKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL+ITV+  D+EA  +W    G+  +++ R+   DNFW M +TGPCGP +EIF+D G
Sbjct: 120 PKERLWITVHISDDEAADIWVNEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSTEIFWDHG 178

Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E IPGG PGS ++  +RYIEIWNLVFMQFE+ +  +   LPK SIDTGMGLER+A V+Q 
Sbjct: 179 EDIPGGPPGSPDDDLDRYIEIWNLVFMQFERDSTGKMTPLPKPSIDTGMGLERVAAVMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYDIDLF+HLI+A+ ++ G+     N  + +V+ DH+RS +FL+ DG++P+NEGRGY
Sbjct: 239 VHNNYDIDLFQHLIKAAAKIIGVTDLAEN--SLKVVADHIRSCAFLVVDGVVPSNEGRGY 296

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG +      L+ +L   MG AYPEL+  +  I  T++ E+E+F 
Sbjct: 297 VLRRIIRRALRHGHNLGASGSFFHKLVVSLGEVMGEAYPELLSMQQEIIVTIKKEEEQFA 356

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+G+ +L+  L +L  ++ L G++ F+LYDT G P D+  DI   RG +  D+  + 
Sbjct: 357 RTLDKGMGVLEAALENLTAEQ-LPGELIFQLYDTFGFPTDLTNDIARERGYSM-DMEGYE 414

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E QR+RAR+ S   G   +E I        G+T+F+GY+ L  S             
Sbjct: 415 ECMEAQRARARSASQ-FGLDYSESIRVE-----GSTEFVGYNSLEHS------------- 455

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A+   GE V  A    +V V+   TPFYAE+GGQ+GD+G       
Sbjct: 456 ----------ADVVALYSAGEEVSAAGMDAEVAVILGSTPFYAESGGQVGDSGYLQTASA 505

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++++TD +K  E   +H   V  G L    ++  T+D   R   ++NHSATHLLH AL  
Sbjct: 506 KIEVTDCRKAGEH-HLHIGKVLSGELNVGDAVTATVDCSVRTATALNHSATHLLHSALQQ 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG HV+Q GS +    LRFD +H + I++ +++ IE  VN  I +N PV T +M+ ++A
Sbjct: 565 ILGEHVNQKGSLVDSQRLRFDFSHGESISAQQIRDIEHRVNREILRNTPVQTDVMSMDEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA AL G KY   VRV+S+    GG  S  LCGGTH + TG+I LL I +ESS+ AG
Sbjct: 625 VEKGAMALFGEKYGSEVRVLSM----GGDFSVELCGGTHANRTGDIGLLKISAESSVSAG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+TG+ A ++     + +  +A+ L+ ++ +V  +  ++ E+ RKLQ      K 
Sbjct: 681 VRRIEAVTGEAAIAYCDALQDTVSEMANVLRAARHSVADKARQVVEDNRKLQKEIDALKS 740

Query: 780 QLNVE---DLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L      DL     +I   + +S ++   D+K L+ V D ++ K+QSG+ ML  +  + 
Sbjct: 741 KLANASGNDLMAGLREINGFSVLSTVVEGADAKSLRGVADQVRSKLQSGVFMLAAVDGD- 799

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           KA+++  VT+DL D+  A DL +     +  G GGGR  MAQ    +      A+  V  
Sbjct: 800 KAALVAGVTQDLTDKLKAGDLLKYVTAQV-DGKGGGRADMAQGAAGSTVNLAAALDSVYD 858

Query: 895 FL 896
           ++
Sbjct: 859 WV 860


>gi|22096207|sp|Q9PH22|SYA_XYLFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 884

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/910 (41%), Positives = 553/910 (60%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE IPGG PGS  E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N   + RVI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNK--SLRVIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG++ +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           ++ F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 424 MVGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGLR----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 476 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 I-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +  DG+RL++TD QK       H A + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV Q GS + PD LRFD +H +PI +A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHINRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +     +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|118602853|ref|YP_904068.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|205830196|sp|A1AXE0|SYA_RUTMC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118567792|gb|ABL02597.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 865

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 538/902 (59%), Gaps = 44/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH +  S+SLIP ND TL+F N+GMV FK++F+G EK  Y   
Sbjct: 1   MKTAQIRQKFLDYFESKGHTIESSASLIPHNDKTLLFVNAGMVLFKDVFSGVEKRPYMRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LTKE +L 
Sbjct: 61  VSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIYYAWEFLTKELNLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+++V++ED+EA  +W    G   ++I R  T DNFW M +TGPCGP SEIF+D GE
Sbjct: 121 KEKLWVSVFEEDDEAENIWINEIGFPKNRISRCGTKDNFWQMGDTGPCGPSSEIFYDYGE 180

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PG + E+G+RYIEIWNLVF QF++Q       L    +DTGMGLER+A VLQ K
Sbjct: 181 HIAGGPPGHADEDGDRYIEIWNLVFTQFDKQEDGHLKPLAVPCVDTGMGLERLAAVLQHK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            NNYD D F+ L++A   +T       NN  + RVI DH+RS++F+I DG+ P+NEGRGY
Sbjct: 241 NNNYDTDGFQSLVKAIVNLTPKSNNIKNNNASVRVIADHIRSTAFMIVDGVNPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + +   +G  +     L P L  E   AYPEL QA   +E+ L+ E++RF 
Sbjct: 301 VLRRIIRRGIRHGHKMGIDKVFFYRLAPVLALEFKDAYPELKQALPKVEKVLKREEQRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLD+G+ LL+  +++L   E ++G   FKLYDT+G P+D+  DI   R L  ID++ F 
Sbjct: 361 QTLDQGMRLLEDAITNLNGSE-IDGKTVFKLYDTYGFPIDLTADIARERHLT-IDMLGFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR RAR            KI     +  G T+F+GY+ L                
Sbjct: 419 FEMTRQRDRARQA-------GDFKISKKNVDIIGVTEFLGYEQLENI------------- 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S + A+V+  ++VEE  +G+   VV  Q+ FYAE+GGQ+GD+G      I
Sbjct: 459 ----------SSILALVKNSKLVEEIKAGEYGIVVLAQSSFYAESGGQVGDSGVLSNAKI 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++    K+  G+F H+ ++ +G+L+   ++   +D ++R+ ++ NHSATHLLH AL  
Sbjct: 509 EFKVDHTNKQKSGVFEHYGVLNKGVLKVGDTIQANVDKKSRKCIARNHSATHLLHAALRI 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V+Q GS +  + LRFD +H + IT +++  IE  +N  I  N  V T I+N E+A
Sbjct: 569 VLGETVTQKGSLVDSEKLRFDFSHDEVITKSDINKIEGMINRKILGNTKVHTDIINIENA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
               A AL G KY+D VRV+++  +D    S  LCGGTHV   G+I L  I SES + AG
Sbjct: 629 KKKDAIALFGEKYSDTVRVLTMGKDD---FSVELCGGTHVKQLGDIGLFRITSESGVSAG 685

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KR 777
           +RRIEA+TG  A          L  ++   K +   VV +V +  ++ ++L+      ++
Sbjct: 686 VRRIEALTGYDAYQFDNQMQNSLSEISQMTKSNNAQVVEKVTQFIKQQKELEEQITIFQK 745

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L  N  D       ++ ++  +S ++     K+L+++ D L+ K+ S +I+L  +S + 
Sbjct: 746 QLTSNQGDDLIGQVQEVRNIKLLSTVVEGSSGKDLRNIADKLKDKLGSAVIVLAVVSND- 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+++ VT+DL  R+ AV +    A+ + GG GGGRP MAQ GG       +A+A V S
Sbjct: 805 KVSLVVGVTKDLTKRYQAVKILNYVAEQI-GGKGGGRPDMAQGGGTQPEYLAKALASVKS 863

Query: 895 FL 896
            +
Sbjct: 864 LI 865


>gi|192362500|ref|YP_001981850.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|190688665|gb|ACE86343.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 875

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/911 (40%), Positives = 534/911 (58%), Gaps = 56/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL++F+  GH ++ SSSL+P NDPTL+FTN+GM  FK++F G E   Y  
Sbjct: 1   MKS-AEIRDAFLKYFESKGHTVVASSSLVPGNDPTLLFTNAGMNQFKDVFLGGETRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EF 118
             + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT     
Sbjct: 60  AASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTSKAWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++   +L++TVY  D+EA+ +W    G+ A++IIRI  N       DNFW+M +TGPCGP
Sbjct: 120 NIPAEKLWVTVYASDDEAYAIWHNEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           C+EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CTEIFYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ V+Q   +NY+IDLF+HL+ A+ + TG     +   + RVI DH+RS SFL++DG+
Sbjct: 240 ERISAVMQHVHSNYEIDLFQHLLSAAVEATGTSDLESK--SLRVIADHIRSCSFLVSDGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG  +P    L+ AL   MG AYPEL + +  IE  
Sbjct: 298 LPSNEGRGYVLRRIIRRAIRHGNKLGQKQPFFHKLVKALAEVMGDAYPELHKNRAHIERV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L  E+E+F KTLD+G+ +L+  L+ L   E + G + F LYDT+G P+D+  DI   RGL
Sbjct: 358 LLQEEEQFEKTLDKGIAVLEDALAKLSGTE-IPGKLVFTLYDTYGFPVDLTNDIARERGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   ++ A       A   +    +GT +  + ++     AT+F+GY  L       
Sbjct: 417 T-IDQDGYDAA------MAEQRARARAAGTFKVDYSAVGLDLPATEFLGYRQLA------ 463

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V A+++  + V+  V G    VV D+TPFYAE+GGQ GD
Sbjct: 464 -----------------EQGKVVALIKDSKKVDRLVEGDDGVVVLDRTPFYAESGGQAGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G     G RL++ D QK+A    +H   V +G +         +D   R+  ++NHSAT
Sbjct: 507 CGYLEQGGNRLEVRDCQKQANA-HLHLVHVLQGAISVGDVFGAKVDANVRQATALNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV+Q GS +  + LRFD +H + +T  +LK+IE  VND +  N  V 
Sbjct: 566 HLMHAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVTPEQLKTIETLVNDQVRANSAVA 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + + A A GA AL G KY D VRV+++    G   S  LCGGTHV+ TG+I +  I
Sbjct: 626 TELCDMDTAKAKGAMALFGEKYGDTVRVLTM----GDGFSVELCGGTHVARTGDIGVFRI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SES + AGIRRIEAITG +A +     +  + + A  +K ++ N++ +++ +  + RKL
Sbjct: 682 TSESGVAAGIRRIEAITGTKALALFDQVESLVDAAARSIKANRDNLLEKLDALVAQNRKL 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K +L              +  +  ++  +   D++ L+  +D  + K+ S ++
Sbjct: 742 EKDLAGLKTRLATAGSGDVLSQAQDVNGIKVLALNLEGADARSLRDTVDQFKNKLGSAVV 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +  + K S++  VT+D+  +  A DL    A  +GG GG GRP MAQ GG +  + 
Sbjct: 802 LLAAVEND-KVSLVAGVTQDITAKVKAGDLMAHVAGQIGGKGG-GRPDMAQGGGTDVARL 859

Query: 886 DQAIAGVASFL 896
             A+A V  ++
Sbjct: 860 ADALASVLPWV 870


>gi|310643515|ref|YP_003948273.1| alanyl-tRNA synthetase [Paenibacillus polymyxa SC2]
 gi|309248465|gb|ADO58032.1| Alanyl-tRNA synthetase [Paenibacillus polymyxa SC2]
          Length = 877

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/910 (38%), Positives = 510/910 (56%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF+  GH + PS+ L+P  DP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEA+KLW +  GL A++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE     +         E ERY+E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEAYGSDMTDPEMYPGGENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D D+F+ LIQ +  + G+KY  N  + V  +VI DH+R+ +F I DG+LP+
Sbjct: 234 ILQNVDSNFDTDIFQPLIQKTAAMAGVKYNDNVDSDVALKVIADHVRTVTFAIGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG   P M  L+  +   MG  YPE++  +  I + +++
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKMLGMNRPFMFELVETVGDIMGVYYPEVVDKRDFIIKVIKT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  + +    +   +++G  AFKLYDT+G P D+ +D    +GL 
Sbjct: 354 EEERFHETLTDGLAILADISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F++A++EQR RAR       S   +    +L +    + F+GY+ L        
Sbjct: 414 -VDREGFDEAMQEQRQRARDAHQDNASMKIQG--GALSDLAVKSDFVGYNDL-------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + AIV    +VE    GQ  +VV D TPFYAE+GGQ+ D 
Sbjct: 463 ---------------VTESKIVAIVYDDMLVESVSEGQSCQVVLDVTPFYAESGGQVSDH 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +  ++  + K  +G  VH  +VE G L    ++   +D  +R ++  NH+ATH
Sbjct: 508 GLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN  I   L V  
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLNVTI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +   ++A A GA AL G KY D VRVV V     G +S  LCGG HVS+T +I L  +V
Sbjct: 628 ELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKLV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG+    ++ GQ E LK  A  +K     V  R+E + ++ + L 
Sbjct: 683 SESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDLS 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L+  +         +   V  ++  +       L+++ D L+ K+ + ++ 
Sbjct: 743 RENESLQSKLSAIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKSKLPAAVLA 802

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L     +K   V++V  E      +A  L +  A V GGGGG GRP MAQ+GG + +K D
Sbjct: 803 LGAAMDDKVNFVVVVPAEHTKTGLHAGKLVKEIAAVCGGGGG-GRPDMAQAGGKDASKLD 861

Query: 887 QAIAGVASFL 896
           +A+      +
Sbjct: 862 EALQRAHELV 871


>gi|326204671|ref|ZP_08194527.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325985238|gb|EGD46078.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 879

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 534/906 (58%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  L S+ L+P NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERYLKFFESKGHLRLASAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  AI  AW+ +T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTEDLKMPVE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF +W K+ GL A++I+R+   DNFW    TGPCGPCSEI+FD+G   
Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-TGPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+E WN VF QF +  +     L   +IDTGMGLER+A + Q+  
Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNRDEQGNYTRLTHPNIDTGMGLERLACISQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D   +++    +  G++Y+      V+ RVI DH+RS++ ++ DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVWNILDYICKTAGVEYKKSEKTDVSIRVITDHIRSTTMMVCDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +P +  +   +  E   AYPEL +    I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKAGYIKKVIKIEEERFE 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+G+V+L+  +      K E++ G++ FKL+DT+G PLD+ ++I    GL GID   
Sbjct: 361 ATVDQGIVILNDFIDEIKAKKQEVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++ QR +AR       +       F   +K   T F+GY+ +              
Sbjct: 420 FKKEMDAQRKKARDAHNSKDTSAWSDSVFDKLDKSQKTAFVGYENI-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S++  IV+ GEIV+ A  G ++ V+ D+TPFYAE GGQ+GD+G  I  
Sbjct: 466 ---------VCESVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDSGALIAK 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              ++I +  K A+G F+H   VE G++ T  ++  +ID + R  ++ NH+ THLLH AL
Sbjct: 517 NGVIKIENCTKTADGKFLHTGFVETGLVETGSTVTASIDEKRRTAINRNHTVTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG HV Q GS + P+ LRFD +H   +T  ELK +ED  N+ I  ++ V  + M  +
Sbjct: 577 RTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDMTNEAILNSMEVDVKEMPID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV VE      +S  LCGGTH+ +T +  L+ I+ ES + 
Sbjct: 637 EAKKLGAMALFGEKYGNTVRVVKVE-----DYSVELCGGTHLKNTAQAGLVKILGESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+TG+ A  +   ++  L  ++  LK +  + + +VE + +E +  +    + 
Sbjct: 692 AGVRRLEALTGEAAIRYYTERENLLNEVSQALKATPQDSLKKVESLGQELKNAEKEIEQL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L   +      +  ++  V  +      +D + L++  D L+ K+ SG+I+L G   
Sbjct: 752 RNKLVSGESESVLANAVEVKGVKVVMARFDTMDMEGLRNTGDMLKNKLGSGVIVL-GSGY 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S ++  T+D++ +  ++ ++ +  AK  GGGGG GRP MAQ+GG + +K D+A+  
Sbjct: 811 GDKVSFVVTATKDVVAKGIHSGNIIKEVAKTAGGGGG-GRPDMAQAGGKDLSKIDEALKS 869

Query: 892 VASFLK 897
             S ++
Sbjct: 870 AVSIVE 875


>gi|254524059|ref|ZP_05136114.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219721650|gb|EED40175.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 882

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/893 (43%), Positives = 539/893 (60%), Gaps = 49/893 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK  Y    
Sbjct: 8   TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + L  
Sbjct: 68  DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+EA+ LW+ + G+  ++I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ I GG PGS  E+G+R+IEIWNLVFMQF++Q       LP   +DTGMGLER+A
Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI+ + ++TG     N   + RVI DH+R+ SFLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENK--SLRVIADHIRACSFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P    L+P L  +MG AYPEL  A   +   L++E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAMDTVTRALQAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V      + ++ G  AF+LYDT+G PLD+ QDI   R L  +D
Sbjct: 366 EERFAETLDAGMKIFEDVAGKAS-NGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I  F+ A+E+QR  ARA     G  T   +   L      T F+GYD L+          
Sbjct: 424 IAGFDAAMEQQRETARAAGKFGGGVT---LPAELVATLSPTVFLGYDRLQADGLS----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A+++ G  V+ A +G  V V+ +QTPFYAE+GGQ+GDTG  
Sbjct: 476 -----------------VLALLKDGRPVQSADAGDSVIVITNQTPFYAESGGQVGDTGVL 518

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+G+RL + D QK A     H   +  G L+    L   +D + R    +NHSATHLLH
Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGTLSEGGLKIGDVLSGQVDGERRGATILNHSATHLLH 578

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS + PD LRFD +H +PI++ EL  IE  VN  +  N       M
Sbjct: 579 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHTM 638

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A+  GA AL G KY + VRV+ +     G +S+ LCGGTHV+ TG+I L  I SE 
Sbjct: 639 AMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TGQ A  H+  ++ +L   A  L  S  +VV ++  + +  ++L+   
Sbjct: 694 GVSAGVRRIEAVTGQGALDHVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLEREL 753

Query: 775 A---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +       DLS    ++A V  ++  +   D+K L+  MD L++++   +I+L G
Sbjct: 754 EAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++ KA+++  V      +  A +L    A  +GG GG GRP +AQ GG +G
Sbjct: 814 -AQDGKAALVAGVNGSATGKVKAGELLSHIAGQIGGKGG-GRPDLAQGGGEDG 864


>gi|298529109|ref|ZP_07016512.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510545|gb|EFI34448.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 882

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/909 (42%), Positives = 559/909 (61%), Gaps = 41/909 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FFQ N H ++PSSSLIP +DP+L+FTN+GMV FK +F GQEK  Y  
Sbjct: 1   MLSAAEIREKFLKFFQDNHHTVVPSSSLIPADDPSLLFTNAGMVQFKKVFLGQEKRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKERAI LAW  LT+E  L
Sbjct: 61  AVTSQKCLRVGGKHNDLENVGRTRRHHTFFEMLGNFSFGDYFKERAIDLAWTFLTRELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L+IT++ +D++A  LW++++G+S D+I R+   DNFWSM +TGPCGPCSE+ +DQG
Sbjct: 121 ERDKLFITIFADDDDAHGLWQEVAGVSPDRIYRLGEKDNFWSMGDTGPCGPCSEVLYDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +RY+EIWNLVFMQ+++  +     LP+ SIDTGMGLER++ V Q
Sbjct: 181 EGMSCGPDCAIGVCDCDRYLEIWNLVFMQYDRDQEGNLNPLPRPSIDTGMGLERISAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +NYD DL K LI  + + +G +Y  + ++ V   VI DH RSS+F+IADGILP+NEG
Sbjct: 241 GVYSNYDTDLLKSLITDTARKSGKEYGRDRDDDVALAVIADHARSSAFMIADGILPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGY+LRR++RRA  + R LG  EP +   +  +  +M  AYPEL + +  +   +R E+E
Sbjct: 301 RGYILRRLIRRAFRFGRHLGLAEPFLHQTVQVVVQDMSMAYPELEKGRDFMVRVIRQEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL++GLVLL+  L  L   ++  + G+ AFKLYDT+G PLDI+ DI   RG + +D
Sbjct: 361 RFSETLEKGLVLLEEELKKLESLQVNTVPGETAFKLYDTYGFPLDIVNDIAEKRGFS-VD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +++QR RARA   G G     ++  SL+ +   T F+GYD L+          
Sbjct: 420 EAGFQECMQDQRQRARAAWKGSGDAGLGEVLSSLEGELPQTSFVGYDRLQ---------- 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                           IV  + Q+G   E    G+K  +V  +TPFYAE+GGQ+GD G  
Sbjct: 470 ------------DQGEIVLLVDQEGRSREALSQGEKGWLVASRTPFYAESGGQVGDRGRI 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +  + D Q +A G+  H   V RG +     + LT+D   R   + NH+ATHLLH
Sbjct: 518 QAARGQAMVRDTQDQAAGVVAHEVEVSRGEVHKGDVVDLTVDEGRRVATARNHTATHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +    LRFD TH + +T+ E++ IE+ VN  I  +  V  R+M
Sbjct: 578 LALRRVLGEHVHQAGSLVDEKRLRFDFTHIQALTAEEMERIEEEVNAAILSDYQVQVRVM 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A+  GA AL G KY D+VRVVSV     G  S  LCGGTH+ ST +     +VSES
Sbjct: 638 DYSQAVQEGAIALFGEKYTDKVRVVSV-----GNISMELCGGTHLDSTAQAGTFCLVSES 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           ++ +G+RRIEA+TG  A ++  G  + + SL   LKV+   +V +V+ + E+ R+L   +
Sbjct: 693 AVGSGMRRIEALTGWDALNYWRGMRKSVTSLQETLKVAPDQLVDKVQALQEQMRELAREN 752

Query: 775 AKRKLQLNVE---DLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +++ E   D++  K  +  V  ++  +   D + L+S+MD ++ K+ +G+ ML G
Sbjct: 753 KALSQKISAEQGRDIASEKKMVGRVPLVARKVDVGDVEGLRSLMDDIRSKLDTGVAML-G 811

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              + K ++L+ V++DL + F A +L +  AK + GG GGGRP +AQ+GG +    D+AI
Sbjct: 812 TRNKGKPTLLLYVSKDLHENFTAPELIKEVAKEIKGG-GGGRPDLAQAGGSDAQGLDRAI 870

Query: 890 AGVASFLKK 898
             +   L +
Sbjct: 871 ERLEEILAE 879


>gi|119946985|ref|YP_944665.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|205830184|sp|A1T001|SYA_PSYIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119865589|gb|ABM05066.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37]
          Length = 867

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/888 (41%), Positives = 531/888 (59%), Gaps = 46/888 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + + + IR  F +FF   GH+ + + SL+P +DPTL+FTN+GM  FK+ + G EK  Y  
Sbjct: 2   IKSTNEIRQGFRDFFVNKGHQSVSTGSLVPHDDPTLLFTNAGMNQFKDTYLGTEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT E  L
Sbjct: 62  ATSSQCCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEYLTVELGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+DED EA K+W +  G+    ++RI   DNFWSM +TGPCGPCSEIF+D G
Sbjct: 122 PKDKLWVTVFDEDLEAEKIWIEEIGVDPKCVLRIGAKDNFWSMGDTGPCGPCSEIFYDHG 181

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GG PG++ E+G+R+IEIWN+VFMQ+ +        LPK S+DTGMGLER++ ++Q 
Sbjct: 182 EDVWGGPPGTAEEDGDRFIEIWNIVFMQYNRHADGTMENLPKPSVDTGMGLERISAIMQN 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+   +VTG     +   + RV+ DH+RS  FLI DG++P+NEGRGY
Sbjct: 242 CHSNYEIDLFQGLIKKVAEVTGASDLEDK--SLRVVADHIRSCGFLICDGVMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     +   L  +MG AYPEL + +L +E+ LR E+E+F 
Sbjct: 300 VLRRIIRRAVRHGHKLGAKDIFFFKIYDELINQMGDAYPELSKQRLFVEKILRREEEQFA 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLDRGL +LD  L HL + +++ GDV FKLYDT G P D+  DI   RGL  ID   F+
Sbjct: 360 KTLDRGLQILDNELDHL-EGQVIPGDVVFKLYDTFGFPADLTADIARERGLT-IDEAGFD 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+ EQR RA+  +   G    + +    K     T+FIGY+ L+G              
Sbjct: 418 KAMAEQRKRAQQAN-NFGIDYNKTLIIDQK-----TEFIGYETLQG-------------- 457

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V  +V +G  V     G   +V+   TPFYAEAGGQ GD G  I +  
Sbjct: 458 ---------AATVTHLVVEGAFVNALKEGDSGQVILSATPFYAEAGGQSGDAGKLILNNG 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +TD +K  +  FVH   V  G ++    +   +D   R+ ++++HSATHLLH AL  
Sbjct: 509 VFVVTDTKKSGDA-FVHSGYVGMGSVKVNDKVHAEVDTARRQSIALHHSATHLLHAALRK 567

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS +  D LRFD +H + +++  L  +   VN+ I  N  VVT++M+ E+A
Sbjct: 568 TLGEHVTQKGSLVDADKLRFDFSHFEALSADSLSEVTFLVNEAIRNNYEVVTKLMDIEEA 627

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            +S A AL G KY++ VRVV +     G  S+ LCGGTH   TG++ L  I SES I AG
Sbjct: 628 KSSNAMALFGEKYDEMVRVVQM-----GDFSTELCGGTHAKRTGDLGLFLIRSESGIAAG 682

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA  G  A   +     ++      ++    N+  ++E++ +  + L+   A+ K 
Sbjct: 683 VRRIEATVGSAADQVISELLYEVDKACGLVRGDHVNLGEKIEQLVDRSKLLEKEVAELKA 742

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++          +  +I  V  +   I  +D K L+  +D ++ K+QSGI++L  ++ + 
Sbjct: 743 KIASAAGANLIDNAIEINGVKVVIANIEGIDPKLLRDSVDQMKNKMQSGIVVLATVAADD 802

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           K S++  V++DL+ +  A +L  L A  +GG GG GRP MA +GG N 
Sbjct: 803 KVSLIAGVSKDLIKKVKAGELVNLVAGPVGGKGG-GRPDMAMAGGNNP 849


>gi|304316715|ref|YP_003851860.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778217|gb|ADL68776.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 879

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/907 (39%), Positives = 552/907 (60%), Gaps = 50/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SL+P ND +L+  N+GM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK  +L + 
Sbjct: 66  CQKCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T+Y+ D+EA+ +W K+ GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVTIYENDDEAYDIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF++ ++     LPK +IDTGMGLERMAT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFDKDSEGNYNSLPKPNIDTGMGLERMATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++ G+KY  +  N V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITDYVGEMAGVKYGDDKKNDVSLRVITDHIRGVTFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  Y +LLG  +P + +++  +      AYPELI+ K  I++ ++ E+ERF 
Sbjct: 301 VLRRILRRAARYGKLLGLDKPFLHNVVDVVVEHYSGAYPELIERKDYIKKVIKKEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +LD  ++ L      +L G+ AFKLYDT+G P+++ ++IL   G+  +D + 
Sbjct: 361 ETIDQGLGILDEYINDLRSEGKTVLEGNKAFKLYDTYGFPIELTKEILNESGMT-VDEVE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      +   + I+ +LK+    T+F+GYD ++             
Sbjct: 420 YQKELEKQRLRARSSRKEDNALWEKDIYSTLKDI--ETKFVGYDSVKSD----------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V AI++  E+V+ A +G++V V+ D TPFYAE+GGQ+GD G    +
Sbjct: 467 ------------AKVLAIIKDNELVDSAEAGEEVNVILDMTPFYAESGGQVGDKGVIKNE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + + I D +K     FVH   VERGIL    ++   ID +NR   + NH+ATHLLH AL
Sbjct: 515 DVFVNIKDCKKAGGNKFVHIGTVERGILSVGDTVEALIDEKNRLSTARNHTATHLLHSAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              +G HV Q GS +TP+ LRFD TH + +T  E+K+IE+ VN+ I +N+ V   IM+ +
Sbjct: 575 RKFIGDHVHQAGSLVTPERLRFDFTHYQALTDEEIKTIENEVNEKIYENIDVSVDIMSHD 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA AL   KY D VRVV+V       +S  LCGGTHV +TG I +  I+SES + 
Sbjct: 635 EALKKGAMALFQEKYGDVVRVVNV-----SDYSKELCGGTHVDNTGNIGVFKIISESGVA 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG  A  ++  ++E + ++   LKV++ ++V RV  + +  +  +    + 
Sbjct: 690 AGIRRIEAVTGINAVKYMNEKEEIIANIGQILKVNEKDIVNRVTGMSQTIKDYEKQIEQL 749

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++                 V F+S ++++ D  ELK + D L+ K++S +++   I +
Sbjct: 750 KSKIVSSTSERLINLAVDFNGVKFISAVLNDFDVDELKMMGDILKDKLKSAVLVFATI-R 808

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K + + + T+D++    N   + +   + + GG GGGRP MAQ  G N +K + A+  
Sbjct: 809 NGKINFVGMATKDVVKFGINVGTIIKEVCQ-IAGGKGGGRPDMAQGVGNNLDKVNDALNA 867

Query: 892 VASFLKK 898
               + +
Sbjct: 868 SKMLVME 874


>gi|119899070|ref|YP_934283.1| alanyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|205829981|sp|A1K991|SYA_AZOSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119671483|emb|CAL95396.1| AlaS protein [Azoarcus sp. BH72]
          Length = 885

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/921 (41%), Positives = 534/921 (57%), Gaps = 65/921 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FF+  GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-AEIRAKFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTEVFKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L++TVY ED+EA+ +W K  G+ A+++IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKDKLWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+RYIEIWN VFMQF +  +     LPK S+DTGMGLER
Sbjct: 180 EIFYDHGPHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIV-NHRVIVDHLRSS 282
           ++ VLQ    NY+IDLFK LI ++ +  G              N I  +++V+ DH+R+ 
Sbjct: 240 ISAVLQGVHANYEIDLFKSLISSAMRAVGTAEALVERARDSMTNTISPSYKVLADHIRAC 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           SFLIADG++P NEGRGYVLRRI+RRA+ +   LG        ++P L  EMG AYPEL  
Sbjct: 300 SFLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGEAYPELKA 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400
            +  + + LR E+ERF  T++ G+ +++G L+ +    + + NGD AFKL+DT+G PLD+
Sbjct: 360 GERRVADVLRQEEERFFATIENGMAIVEGELAAMATAGNTVFNGDTAFKLHDTYGFPLDL 419

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             DI   R +  +D  +F+ A+  Q+ +ARA           K+  +L     AT F GY
Sbjct: 420 TADICREREVT-VDAAAFDAAMARQKEQARAAGK-------FKMAANLDYDGPATTFHGY 471

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L                            + A+ + G  V E V G    VV D TPF
Sbjct: 472 DKLE-----------------------AKGNILALYKDGVAVNELVEGDLGVVVLDHTPF 508

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ GD G   G      + D  K    +F HH +V+ G L     +   +D   R
Sbjct: 509 YAESGGQAGDRGELKGAAGIFGVEDTLKIQASVFGHHGVVKTGKLAVGQGVAARVDTAAR 568

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NHS THL+H AL  +LG HV Q GS + PD  RFD  H+ P+++ E++ +E+ VN
Sbjct: 569 AATARNHSVTHLMHKALREVLGPHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVN 628

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N      +M  +DA  SGA  L G KY D VRV+S+        S  LCGGTHV+
Sbjct: 629 REILANAATEAAVMALDDAQKSGAMMLFGEKYGDEVRVLSIGS------SKELCGGTHVA 682

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG+I L  IV E  + AG+RR+EA+TG+ A  +   Q+ +++ +++ LKV    V  RV
Sbjct: 683 RTGDIGLFKIVVEGGVAAGVRRVEAVTGENALRYTQEQERRVQGVSALLKVQPDEVAERV 742

Query: 761 EEIWEEYRKLQLIHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDA 815
             I +  R L+   A+ K +L     EDL      +     ++  +   D   L+  MD 
Sbjct: 743 AGILDNVRALEKELARLKSKLAASQGEDLVAQAVDVGGAKLLAATLEGADVPTLRETMDK 802

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L+ K++S  I+L  ++ + K S++  VT DL  +  A +L    A+ + GG GGGRP MA
Sbjct: 803 LKDKLKSAAIVLASVA-DGKVSLIAGVTADLTGKVKAGELVNFVAQQV-GGKGGGRPDMA 860

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG   +K   A+A V +++
Sbjct: 861 QAGGTEPDKLPAALAAVQAWV 881


>gi|71279113|ref|YP_267790.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|83305842|sp|Q487H5|SYA_COLP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71144853|gb|AAZ25326.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 876

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/914 (42%), Positives = 542/914 (59%), Gaps = 58/914 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + + + +R  FL+FF    H+++ SSSL+P ND TL+FTN+GMVPFK++F G E   Y  
Sbjct: 2   IKSTAEVRQAFLDFFATKQHQIVKSSSLVPGNDATLLFTNAGMVPFKDVFLGAETRSYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT E  L
Sbjct: 62  ATSAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKNDAISYAWEFLTGELGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPC 172
            + +L +TVY  DEEAF  W+   G+  DKIIRI           DNFWSM +TGPCGPC
Sbjct: 122 AKEKLLVTVYATDEEAFSYWRDEVGVPEDKIIRIGDKSANKKYESDNFWSMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG PGS  E+G+R+IEIWN+VFMQF +Q+      LP  SIDTGMGLE
Sbjct: 182 SEIFYDHGEDIFGGPPGSPDEDGDRFIEIWNIVFMQFNRQSDGRMDPLPNPSIDTGMGLE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+ID+F+ LI+ +  +       +   + RVI DH+RS SFLI DG++
Sbjct: 242 RISAIMQNVHSNYEIDIFQALIKDTAALLDCSDLEHK--SLRVIGDHIRSCSFLIVDGVV 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   L  T      L+ +L  +MG AYPEL Q + +IE+ L
Sbjct: 300 PSNEGRGYVLRRIIRRAIRHGHKLEATGHFFHKLVASLIAQMGEAYPELAQQQAIIEKLL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R E+E+FG+TLDRG++LL+ +L++L  D I+ GD  FKLYDT+G P D+  DI   R L 
Sbjct: 360 RIEEEQFGRTLDRGMILLEDILANLSGD-IIKGDDVFKLYDTYGFPADLTADIARERNLK 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID   F+ A+++QR RA+  S           +    +    T F GYD          
Sbjct: 419 -IDKDGFDVAMKQQRERAQQASQ------FGTDYNQQLKSDQNTAFKGYD---------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                         +  S+ V  +   Q  + V +  SG++  V+ D TPFYAE+GGQ+G
Sbjct: 462 -------------NDSYSATVVELFNSQDQDPVSQLNSGEQGIVILDHTPFYAESGGQVG 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D+G    DG   ++TD  K     F H        +     +   I+ + R  +  NH+A
Sbjct: 509 DSGLLHLDGGVFEVTDTIKLGNA-FAHRGTAHTD-VGLNRRVKAEINVERRAAIVKNHTA 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS    D LRFD +H + +T+ EL  +E  VN+ I +N   
Sbjct: 567 THLLHEALRKVLGEHVTQKGSLCDSDKLRFDFSHFEGVTAQELHDVEQMVNNEIRRNHAK 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T  M  E+A A GA AL G KY+D VRVV++     G  S  LCGG HV+ TG+I  L 
Sbjct: 627 QTESMYIEEAKAKGAMALFGEKYDDEVRVVTL-----GDFSIELCGGVHVNRTGDIGFLK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IVSES I AG+RRIEA+TG  A   +  Q   L ++A+ +K    N   +VE +    ++
Sbjct: 682 IVSESGIAAGVRRIEAVTGTGALDFINQQTASLTTIAALVKSDVTNASSKVELLISRSKQ 741

Query: 770 LQLI--HAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGI 824
           L+      K++L         +   ++N +  +I++   V+SK L+ ++D L+ K+QSG+
Sbjct: 742 LEKEIGQLKQELAAQAGSDLVNNTIEINGVKVLIADLGSVESKALRGMVDELKNKMQSGV 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           IML   +   K  ++  VT+DL+ R  A DL  + A+ + GG GGGRP MAQ+GG     
Sbjct: 802 IMLA-TANGPKVGLIAGVTKDLVGRVKAGDLVNMVAQQV-GGKGGGRPDMAQAGGSQPEN 859

Query: 885 ADQAIAGVASFLKK 898
              A+  V+++L +
Sbjct: 860 ITSALESVSAWLTE 873


>gi|239816150|ref|YP_002945060.1| alanyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|239802727|gb|ACS19794.1| alanyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 874

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/909 (41%), Positives = 533/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G++K  Y    
Sbjct: 7   TVADIRKTFLDFFASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  ++  A++LLTK + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY ED+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLWATVYIEDDEAYDIWTKDIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 187 FYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K  GNN  + +VI DH+R++SFL+ADG++P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNN--SLKVIADHIRATSFLVADGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG  +P    L+P L   MG AYP+L+  +  I ETL++E
Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGEAYPKLVADEKRITETLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G    L G+VAFKL+DT+G PLD+  D+   RG++ +D
Sbjct: 365 EERFFETLANGMEILDAALA--GDARTLPGEVAFKLHDTYGFPLDLSADVCRERGVS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A+E+Q++  RA           K+  +++       F GY+ L           
Sbjct: 422 EAGFNAAMEKQKAAGRAAGK-------FKMDRNVEYGGAGNVFTGYEHLE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ V A+  +G  V++   GQ   VV D TPFY+E+GGQ+GD G  
Sbjct: 465 -------------ENAKVVALYFEGAAVQQLKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +G++  + D QK    +F HH    +G L+   ++   +D   R     NHS THL+H
Sbjct: 512 VAEGVQFGVDDTQKIKADVFGHHGTQTQGTLKVGDTVKAAVDTARRAATMRNHSVTHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  D  RFD  H+  +T  ++  IE  VN  I  N     R+M
Sbjct: 572 KALREVLGAHVQQKGSLVDADKTRFDFAHNAAVTHDQILEIEKRVNAEILANTETHARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  IVSE 
Sbjct: 632 DMESAQKTGAMMLFGEKYGESVRVLDIGS------SRELCGGTHVGRTGDIGLFKIVSEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
            + AG+RRIEA+TG  A  +L   +  ++S+A+ LK     + GR+ ++ E+ R L+   
Sbjct: 686 GVAAGVRRIEAVTGANALGYLQELEATVQSVAATLKSPAAELQGRLVQVLEQVRALEREV 745

Query: 774 -HAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL  +  D    +  DVN +  +   +   D+K L+  MD L+ K+++ +++L  
Sbjct: 746 GSLKGKLASSKGDELLAQAVDVNGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAVVVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  V   VT D + +  A +L    A+ +GG GG G+  MA +GG +      A+
Sbjct: 806 V-DGAKVQVAAGVTSDTVGKVKAGELVNFVAQQVGGKGG-GKADMAMAGGTDAAGLPAAL 863

Query: 890 AGVASFLKK 898
             V +++ +
Sbjct: 864 QSVQAWVAE 872


>gi|332160302|ref|YP_004296879.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325664532|gb|ADZ41176.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 838

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/875 (43%), Positives = 533/875 (60%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GM  FK++F G +K  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           SFG YFK  AI  AW+LLT  + F+L + +L++TVY+ D+EA+++W    G+  ++IIRI
Sbjct: 61  SFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRI 120

Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFM 206
             N       DNFW M +TGPCGPC+EIFFD G+ I GG PGS+E +G+RYIEIWN+VFM
Sbjct: 121 GDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFM 180

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
           QF +Q+      LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  +VTG     
Sbjct: 181 QFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLS 240

Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
           +   + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ +  +LG  E     L+
Sbjct: 241 SK--SLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLV 298

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
             L   MG A  EL Q + ++E+ L++E+E+F +TL+RGL LLD  LS L  D  L+G+ 
Sbjct: 299 APLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLTGD-TLDGET 357

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
           AF+LYDT+G P+D+  D+   R L  +D   F QA+E QR RAR  S G G+      + 
Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFGAD-----YN 410

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           +L     A+QF GYD                            + V A+ + GE V+E  
Sbjct: 411 NLIRVDSASQFSGYD-----------------------HVHQQATVTALFRNGEAVDEIH 447

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G++  VV +QTPFY E+GGQ+GDTG          + D QK  + I  H   +  G LR
Sbjct: 448 EGEEAVVVLNQTPFYGESGGQVGDTGELKNATATFAVADTQKYGQAI-GHLGQLAHGTLR 506

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              S+   ID   R ++ +NHSATHLLH AL   LG HV+Q GS +    LRFD +H + 
Sbjct: 507 VNHSIDAQIDAARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEA 566

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +++ +ED VN+ I +N+PV T +M  + A   GA AL G KY+D+VRV+++     
Sbjct: 567 MKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVRVLTM----- 621

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S+ LCGG H S TG+I L  I+SES   AGIRRIEA+TG+ A + L  Q + L+ +A
Sbjct: 622 GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVA 681

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHII 801
             +K    N+  +V  + +  + L+    + K Q   ++      +   +  V  +   +
Sbjct: 682 HLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKLVNGVKLLVSQL 741

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
             V+ K L++++D L+ ++ S II+L  I+ + K S+++ VT+DL  +  A +L    A+
Sbjct: 742 DNVEPKMLRTMVDDLKNQLGSAIIVLATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQ 800

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + GG GGGRP MAQ+GG N      A+A V +++
Sbjct: 801 QV-GGKGGGRPDMAQAGGTNVQALPSALASVEAWV 834


>gi|197124228|ref|YP_002136179.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|196174077|gb|ACG75050.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 905

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/930 (40%), Positives = 540/930 (58%), Gaps = 72/930 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F  +F+++GH  + S+SL+P NDPTL+FTN+GMV FK++FTG+E+  Y   T
Sbjct: 5   TAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T      +
Sbjct: 65  TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPAWLGI 124

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            + RL  TV+        DEEAF+LW K  G+  ++I ++   DNFW+M +TGPCGPCSE
Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELW-KAQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGGLP-------GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           + + QG  IP           G + + +R++EIWNLVFMQFE+        LPK SIDTG
Sbjct: 184 LHYFQGNDIPCAEELAGRRCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
            GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+   ++ V+ RVI DH R+++FL
Sbjct: 244 AGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARATTFL 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+LP+NEGRGYVLRRIMRRA+ + R LG  +P +  +  A+  EMG AYPE  + + 
Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGRRLGLEKPFLAAVCGAVIDEMGGAYPETRENRA 363

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL----------------GKDEILNGDVAFK 389
            IE+  + E+E F +TLD+GL +L+G +  L                    I++G VAF+
Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGKVAFQ 423

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT G PLD+ + I   RG   +D   F++ + EQ  RAR+   G G    + +   + 
Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQ--RARSEWKGSGEQGVDDLHKQIA 480

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
            + G  +F+GY+                            + VKAI+  G  V  A  G 
Sbjct: 481 GELGEVKFLGYEQPAAR-----------------------AQVKAILANGARVARAGKGD 517

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +    
Sbjct: 518 KVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L +D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +P+T 
Sbjct: 578 AVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            EL ++E  VND++ +N    T ++  E+A  +GA  + G KY D VRVV +        
Sbjct: 638 EELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP------ 691

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  A+ L
Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751

Query: 750 KVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--D 805
           K     V  ++++     + L+  L  A+ K              DV     + + V  D
Sbjct: 752 KAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAARVDGD 811

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +AK++ G
Sbjct: 812 GKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAAKLV-G 869

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           G GGG+P MAQ+GG +    ++A+  VA  
Sbjct: 870 GSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899


>gi|256830944|ref|YP_003159672.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256580120|gb|ACU91256.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 879

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/910 (40%), Positives = 540/910 (59%), Gaps = 43/910 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FLE+FQ++GH + PSSSL+P +DPTL+FTN+GMV FK IF GQEK  Y  
Sbjct: 1   MISAGEIRKRFLEYFQQHGHSVQPSSSLVPQDDPTLLFTNAGMVQFKKIFLGQEKRDYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+LAW+ +T E  L
Sbjct: 61  AATSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRLAWNFVTVELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++++ +D+EA +LW+K++ +  ++I R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 DKEKLFVSIFRDDDEAGELWQKVASVPGERIFRLGEKDNFWAMGDTGPCGPCSEIYVDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G        + +RY+EIWNLVFMQF +        LPK SIDTGMGLER+  V Q
Sbjct: 181 ADMACGPDCGIGKCDCDRYLEIWNLVFMQFNRSEDGTLTPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K +N+D DLF+ LIQA  +  G+ Y    ++    RVI DH RS +FL+ADG+LP+NEG
Sbjct: 241 GKRSNFDTDLFQGLIQAMAKKAGVAYHQGEDSDTALRVIADHSRSIAFLLADGMLPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG+ EP +      + +EMG  +PEL+ ++  +   +R E+E
Sbjct: 301 RGYVLRRLIRRAYRFGKLLGFDEPFLCETTDQVVSEMGDTFPELVASREFMVRVVRQEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG+TLD+GL +L+  ++ L     + + G+ AFKLYDT+G PLDI+ DI   +G   +D
Sbjct: 361 RFGETLDKGLRILEDEMASLAAAGSKTITGETAFKLYDTYGFPLDIVNDIAEKQGF-LVD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +  Q+ +++    G G       + +L      ++FIGYD L           
Sbjct: 420 EAGFREHMSVQKKKSKQAWAGSGDKGLAGQFAALMGAGLESEFIGYDCLAA--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S IV  +  +G+ VE   SG    +V  +TPFY E+GGQ+GDTG  
Sbjct: 471 -------------TSRIVALLDAEGQPVERLRSG-VGFMVTLKTPFYGESGGQMGDTGRV 516

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ D  K A  + VH   +  G +  +  + L ++   R   + NHS THLLH
Sbjct: 517 QAPTGSARVLDTLKPAPALIVHKIEIGGGEILADQEVELFVEEGERIATARNHSTTHLLH 576

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P  LRFD TH   ++  EL+ +ED VN  I  + P+VT++M
Sbjct: 577 AALRRVLGEHVKQAGSLVGPSRLRFDFTHISGLSPEELRQVEDEVNRAILADAPIVTQVM 636

Query: 655 NREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           + + A+    A AL G KY   VRVV +  E     S  LCGGTH++STG+     ++SE
Sbjct: 637 SYDAAVQQKQAMALFGEKYEADVRVVEMAGE-----SVELCGGTHLASTGQAGSFALLSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AG+RRIEA+TG  A  H   Q E+++++A+ LK +   +  ++  + ++ + L   
Sbjct: 692 AGIAAGVRRIEALTGWDALRHWQAQREEVRTVAATLKAAPHELGKKIIALQDQGKALAKE 751

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               + ++  E           I+ +  ++  +   D   L+++MD L+ K+ SGII L 
Sbjct: 752 LQTLQARVMSESGRDLASEAKDISGMKVLARKVDAPDMNALRNLMDDLRSKLSSGIIALA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + KA +++ V++DL  R+ A  L +  +  + GG GGGRP +AQ+GG       +A
Sbjct: 812 A-EIDGKAMLVLAVSKDLHGRYTAPALIKEVSDEIKGG-GGGRPELAQAGGSEPEGISRA 869

Query: 889 IAGVASFLKK 898
           +A + +FL K
Sbjct: 870 LAKLEAFLSK 879


>gi|220919010|ref|YP_002494314.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956864|gb|ACL67248.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 905

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/931 (39%), Positives = 538/931 (57%), Gaps = 74/931 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F  +F+++GH  + S+SL+P NDPTL+FTN+GMV FK++FTG+E+  Y   T
Sbjct: 5   TAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T      +
Sbjct: 65  TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPAWLGI 124

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            + RL  TV+        DEEAF+LW K  G+  ++I ++   DNFW+M +TGPCGPCSE
Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELW-KAQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQGECIPGGLP-------GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           + + QG  IP           G + + +R++EIWNLVFMQFE+        LPK SIDTG
Sbjct: 184 LHYFQGNDIPCAEELAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
            GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+   ++ V+ RVI DH R+++FL
Sbjct: 244 AGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARATTFL 303

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           + DG+LP+NEGRGYVLRRIMRRA+ + + LG  +P +  +  A+  EMG AYPE  + + 
Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLEKPFLAAVCGAVIDEMGGAYPETRENRA 363

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL----------------GKDEILNGDVAFK 389
            IE+  + E+E F +TLD+GL +L+G +  L                    I++G VAF+
Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGKVAFQ 423

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT G PLD+ + I   RG   +D   F++ + EQ  RAR+   G G    + +   + 
Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQ--RARSEWKGSGEQGVDDLHKQIA 480

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
            + G  +F+GY+                            + VKAI+  G  V  A  G 
Sbjct: 481 RELGEVKFLGYEQPAAR-----------------------AQVKAILANGARVARAGKGD 517

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +    
Sbjct: 518 KVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L +D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +P+T 
Sbjct: 578 AVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            EL ++E  VND++ +N    T ++  E+A  +GA  + G KY D VRVV +        
Sbjct: 638 EELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP------ 691

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  A+ L
Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEV 804
           K     V  ++++     + L+    + + +               +     ++  +   
Sbjct: 752 KAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAARVDG- 810

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           D K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +AK++ 
Sbjct: 811 DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAAKLV- 868

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           GG GGG+P MAQ+GG +    ++A+  VA  
Sbjct: 869 GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899


>gi|91788770|ref|YP_549722.1| alanyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123355561|sp|Q129G8|SYA_POLSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91697995|gb|ABE44824.1| alanyl-tRNA synthetase [Polaromonas sp. JS666]
          Length = 878

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/909 (40%), Positives = 533/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR +FL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 11  TVADIRKSFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 70

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT  + L  
Sbjct: 71  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTDVYKLPA 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L+ TVY +D+EA+ +W K  GL  ++++RI  N       DNFW MA+TGPCGPCSEI
Sbjct: 131 DKLWATVYIDDDEAYDIWTKEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSEI 190

Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G  I GG PGS E +G+RYIEIWN VFMQF+ Q       LP   +DTGMGLER+A
Sbjct: 191 FYDHGPEIAGGPPGSPEQDGDRYIEIWNNVFMQFDMQPDGSVKPLPAPCVDTGMGLERLA 250

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG K   N   + RVI DH+R+++FL++DG+ P+N
Sbjct: 251 AILQHVHSNYEIDVFDALIKAAARETGEKDLNNK--SLRVIADHIRATAFLVSDGVNPSN 308

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP+L   +  I   L++E
Sbjct: 309 EGRGYVQRRIIRRAIRHGYKLGKKTPFFHKLVADLARLMGDAYPKLRTDEARITAVLKAE 368

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL+ G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 369 EERFFETLEIGMTILDTALA--GGAKVLPGDVAFKLHDTYGFPLDLSADVCRERGV-DVD 425

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+++ARA           K+  +L+       F GY+ L           
Sbjct: 426 ETGFNAAMDRQKNQARAAGK-------FKMDRALEYAGSGNTFTGYERLE---------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V     GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 469 -------------ETAKIVALYADGVPVAALTKGQSGVVVLDTTPFYAESGGQVGDEGEL 515

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I       + D  K    ++ HH  VE+G L     +   ++   R     NHSATHL+H
Sbjct: 516 ISGSAHFAVGDTLKIKSDVYGHHGTVEQGTLNVGDHVNARVNLAVRAATVRNHSATHLMH 575

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T  +++ IE  VN  I  N+     +M
Sbjct: 576 KALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTDDQIREIEARVNAEILSNVATDASVM 635

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY D+VRV+S+        S  LCGGTHV+ TG+I L  IV+ES
Sbjct: 636 DMEAAQKTGAMMLFGEKYGDKVRVLSIGS------SKELCGGTHVTRTGDIGLFKIVAES 689

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RR+EA+TG+ A ++L   +  +++ A  LK S   +  R+ ++ ++ + L+   
Sbjct: 690 GVAAGVRRVEAVTGENALAYLQSLESTVQAAAGSLKASPTELQQRIGQVLDQVKSLEKEI 749

Query: 775 A--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D    +  DV  +  +   +   D++ L+  MD L+ K+++G+ +L  
Sbjct: 750 AALKGKLASSQGDELMAQAFDVKGLKVLAARLEGADARTLRETMDKLKDKLKTGVFVLAA 809

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  +   VT D +    A +L    A+ +GG GG G+  MA +GG + ++ D A+
Sbjct: 810 V-DGNKVQIAAGVTADSVTVVKAGELVNFVAQQVGGKGG-GKADMAMAGGTDASRLDDAL 867

Query: 890 AGVASFLKK 898
             V +++ +
Sbjct: 868 KSVRAWVTE 876


>gi|152979781|ref|YP_001352273.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|205830071|sp|A6SVH6|SYA_JANMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151279858|gb|ABR88268.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 869

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/910 (40%), Positives = 532/910 (58%), Gaps = 56/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N S IR  FL+FF+  GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K  Y   
Sbjct: 1   MNSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A++ +W+LLT+ + L 
Sbjct: 61  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALKWSWELLTQVYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L  TVY ED+EAF +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSE
Sbjct: 121 AEKLLATVYIEDDEAFDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  I GG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+
Sbjct: 181 IFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVKPLPAPCVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+ID F+ LI+A+ + T  K   NN  + +VI DH+R+++FL+ADG++P+
Sbjct: 241 AAILQHVHSNYEIDTFEALIKAAGRETNTKDLSNN--SLKVIADHIRATAFLVADGVIPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG  +P    L+  L  +MG AYP+L      I + L++
Sbjct: 299 NEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLKADAQRITDVLKA 358

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ERF +TL  G+ +LD  L+  G  ++L G+VAFKL+DT G PLD+  D+   RGL+ +
Sbjct: 359 EEERFFETLANGMEILDAALA--GDAKVLPGEVAFKLHDTFGFPLDLSADVCRERGLS-V 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+E+Q++  RA           K+  +++       F GY+ L          
Sbjct: 416 DEAGFAAAMEKQKAAGRAAGK-------FKMERAVEYTGAGNTFTGYEHLE--------- 459

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G  V     GQ   VV D TPFY+E+GGQ+GD G 
Sbjct: 460 --------------EQATVVGLYFEGTAVPSLKEGQAGIVVLDTTPFYSESGGQVGDQGF 505

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +G++  + D QK    ++ HH +  +G L     +   +D   R     NHS TH++
Sbjct: 506 ISAEGVQFGVEDTQKIKADVYGHHGVQTQGTLTVGDKVKAAVDGARRAATMRNHSVTHIM 565

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV Q GS + PD  RFD  H+ P+T  ++  IE  VN  I  N     R+
Sbjct: 566 HKALREVLGDHVQQKGSLVDPDKTRFDFAHNAPVTREQILEIEKRVNAEILLNSDTQARV 625

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  ++SE
Sbjct: 626 MDIESAQKTGALMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVMSE 679

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG+RRIEAITG +A  ++   +  + S A+ +K     +  R+ ++ ++ + L+  
Sbjct: 680 SGVAAGVRRIEAITGAKALGYVQDLEAVIHSAAAMMKTQPAELEPRLAQVLDQMKALERE 739

Query: 774 --HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K KL  +  D        +  +  ++ ++   D   L++ MD L+ K+++  I+L 
Sbjct: 740 VGALKGKLASSQGDELLAQAVDVKGIKVLAAVLEGADVATLRNTMDKLKDKLKTAAIVLA 799

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K S++  VT D + +  A DL    A+ +GG GG G+P MAQ+GG + +    A
Sbjct: 800 AV-NDGKVSLIAGVTADSIAKVKAGDLVNFVAQQVGGKGG-GKPDMAQAGGTDASGLPTA 857

Query: 889 IAGVASFLKK 898
           + GVA+++ +
Sbjct: 858 LQGVAAWVGE 867


>gi|254436958|ref|ZP_05050452.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198252404|gb|EDY76718.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 884

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/897 (47%), Positives = 567/897 (63%), Gaps = 40/897 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++S IR+TFL+++ +NGH+++ SS L+P NDPTLMFTN GMV FKN FTG E   YQ 
Sbjct: 1   MTSLSDIRSTFLDYYARNGHKVVASSPLVPRNDPTLMFTNCGMVQFKNRFTGVESGNYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLTK+F +
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWNLLTKDFGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TVY  D+EA+ LWKKI G+  D+IIRI T+DNFW M  TGPCGPC+EIF+D G
Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKKI-GVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + I GG PGS  E+G+R+IEIWN+VFMQ EQ +     +L   SIDTGMGLER+  +LQ 
Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNIVFMQNEQFDDGTMKLLEMQSIDTGMGLERIGALLQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ DL + LI+AS   T    +G+  V+HRVI DHLRS+SFLIA+G+LP+NEGRGY
Sbjct: 240 HHDNYNTDLMRALIEASANATDGAPDGDGNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG  +P+M  L+ AL  +MG+AYPEL Q + LIE+TL +E+ RF 
Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPVMHRLVSALIQQMGAAYPELGQGQTLIEDTLLNEEIRFK 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TLDRGL LLD  L  + +   L+G  AFKLYDT G PLD+ QD L  +G  G+D   F 
Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGATAFKLYDTFGFPLDLTQDALREKG-RGVDTDGFK 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++ Q+++ARA   G G+     IWF + + +G T+F+GY+                  
Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIVDAHGVTEFLGYET----------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                       + AIV   + V  A +G  V ++F+QTPFY E+GGQ GD G    D  
Sbjct: 462 ------ETAQGQLLAIVSDTDPVNSANTGDCVALIFNQTPFYGESGGQEGDQGTVKTDTG 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++TD  KK  G+F+H A V  G + T     L +D+  R  +  NHSATHLL+ AL  
Sbjct: 516 TARVTDT-KKVAGLFLHMAEVTAGAITTGQGSELVVDHAQRSAIRANHSATHLLNEALRV 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q GS    D LRFD TH+  +T+ EL  +E +VN  + QN  V TRIM  +DA
Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTSCMTAVELAQVEHDVNHYVQQNTTVSTRIMTPDDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            A GA A  G KY D VRVVS+         D   +S  LCGGTHV+ TG+I +  + SE
Sbjct: 635 RALGAQAQFGEKYGDEVRVVSMGRANTGKGVDRQTYSLELCGGTHVARTGDIGMFALTSE 694

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            +   G+RRIEA+TGQ AR +L  +DE L  +   LK    +V  RV+ + +E R L   
Sbjct: 695 RASSDGVRRIEALTGQTARRYLRTRDETLADVEGMLKSKGTDVATRVKALMDERRALANE 754

Query: 774 HAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            A+ + ++ +      E      I  V F + ++  V  K+L +++D ++  + SG ++L
Sbjct: 755 VAQLRREVAMGGGAKDEGTQDKDINGVAFKAQVMQGVTGKDLPAMIDDMKSAMGSGAVLL 814

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +    + KA+V   VT DL+D+ +AVDL R +   LGG GGGGRP MAQ GG + + 
Sbjct: 815 IA-EGDGKAAVAAGVTADLVDKISAVDLVRAAVAKLGGKGGGGRPDMAQGGGKDASN 870


>gi|15606507|ref|NP_213887.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|6226165|sp|O67323|SYA_AQUAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2983727|gb|AAC07289.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 867

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/902 (40%), Positives = 531/902 (58%), Gaps = 48/902 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY       V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF K
Sbjct: 296 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 355

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 356 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              LEEQR RAR H   + +   + ++  LKE    + F+GY+ +               
Sbjct: 415 QCELEEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVGYEHMEW------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V  +V+   +V E   G++ EVV  +TPFY E GGQ+GD G    D 
Sbjct: 461 ----------ESQVVGLVKGEGLVSELKEGEEGEVVLKETPFYPEGGGQIGDAGIIESDK 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D QK  EGI VH   V +G L+   ++   +D + R  +  NH+ATHLLH AL 
Sbjct: 511 ALFKVEDTQKPTEGIIVHIGKVLKGTLKVGDTVHARVDKERRWDIMRNHTATHLLHAALR 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD TH   +T  ELK +E+ VN+ I +NLPV    M  ++
Sbjct: 571 NVLGEHVRQAGSLVADKYLRFDFTHFSALTEEELKRVEELVNEKIRENLPVNVMEMAYDE 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ +GA A+   KY +RVRV+S      G  S  LCGGTHVS+TG+I    I+SESS+ A
Sbjct: 631 ALKTGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGA 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRI A TG+ +      + + LK  +S L V +  V+ ++EE+ EE +  +    + K
Sbjct: 686 GVRRIVAQTGRWSVETAFKEHQTLKKASSALGVGEEEVIQKIEELKEEIKDREREIQRLK 745

Query: 779 LQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +L      E +    + D      +  EV+ +EL+++ D L+++ +  ++  +   K  
Sbjct: 746 QELLKLQIREVVKEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVV-FIASRKGD 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K + +I V++++ D+ NA ++ R   KVL GGGG GR  +AQ GG   +K  +A+  +  
Sbjct: 805 KINFVIGVSKEISDKVNAKEVIREVGKVLKGGGG-GRADLAQGGGKAPDKFPEAVKLLKE 863

Query: 895 FL 896
            L
Sbjct: 864 IL 865


>gi|322382967|ref|ZP_08056799.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153087|gb|EFX45545.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 882

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/913 (37%), Positives = 524/913 (57%), Gaps = 54/913 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               S IR+ +L FF   GH++ PS+SL+P ND +L++ N+GM P K  F G+  P    
Sbjct: 8   FMKASEIRSKWLNFFASKGHKVEPSASLVPHNDASLLWINAGMAPLKPYFDGRIIPENPR 67

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           +   QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE+AI  AW+ LT  K  
Sbjct: 68  IVNAQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEQAITWAWEFLTDPKWI 123

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             +  R+ +TVY ED+EAF LW    GL  ++I ++  +DNFW + E GPCGPC+EIF+D
Sbjct: 124 GFEPERISVTVYKEDQEAFDLWHNKIGLPEERIYKLG-DDNFWGIGE-GPCGPCTEIFYD 181

Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +GE              E ER++E+WNLVF QF          LP  +IDTG GLER A 
Sbjct: 182 RGEAYGDLSDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPSKNIDTGAGLERFAA 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D DLF+ +IQ +  +  + Y+      +  +VI DH+R+ +F + DG+LP+
Sbjct: 242 ILQNVDSNFDTDLFQPMIQKTCGLAKVSYKEKEETDIALKVIADHIRTVAFSVGDGVLPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG  +P M  L+PALC  MG  Y E+++ +  IE+ +R+
Sbjct: 302 NEGRGYVIRRLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKIIRT 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  +++   K  +  + G  AFKLYDT+G P+D+ +D    +G+ 
Sbjct: 362 EEERFHETLSDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQGMT 421

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  +++EQR RARA      S   +     L +    ++F+GY+ L        
Sbjct: 422 -VDKEGFEASMQEQRERARAARQDTDSMNVQG--GPLADFTDKSEFVGYNDL-------- 470

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           V + + A++    +V+    G+  +VV D+TPFYAE+GGQ+ D 
Sbjct: 471 ---------------VVPAKIIALMHNNTMVDIVNEGEICQVVLDRTPFYAESGGQVSDK 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        L++ +V K   G  VH  +VE+G  R       ++D   R  +  NH+ATH
Sbjct: 516 GTIRYGETLLRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL+ +LG HV+Q GS +    LRFD +H   IT  EL+ +E  VN+ I QN+PV+ 
Sbjct: 576 LLHKALNEVLGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIPVII 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M  ++A A GA AL G KY        V     G +S  LCGG HV++T EI    IV
Sbjct: 636 KLMPIDEAKAMGAMALFGEKYG-----KVVRVVRVGDYSLELCGGCHVANTAEIGQFKIV 690

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           SES I +G+RRIEA+ G+ A +++  Q   LK  A  LK    +V  RV+ I  + ++L 
Sbjct: 691 SESGIGSGVRRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMKELN 750

Query: 771 -QLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            ++   + KL   +         ++  +  ++  ++  D   L+ + D ++ +I SG+I+
Sbjct: 751 REIESLRSKLSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSGVIV 810

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G +  +K +++  VT+DL  +  +A  + + +A + GGGGG GRP MAQ+GG + +K 
Sbjct: 811 L-GAASGQKVNLVAAVTQDLTKKGLHAGQIVKAAASICGGGGG-GRPDMAQAGGKDPSKL 868

Query: 886 DQAIAGVASFLKK 898
            +A+  V +++++
Sbjct: 869 KEALLYVETYIQQ 881


>gi|284048255|ref|YP_003398594.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952476|gb|ADB47279.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 875

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/909 (37%), Positives = 512/909 (56%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF++ GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP    +T
Sbjct: 5   SGNEIRQKYLDFFKERGHLVLPSASLIPHDDPTLLLIGAGMAPFKPYFTGKVKPPATRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR G    D++NVGRT RHHT+FEMLGNFSFG YFK+  I  AW+ LTK  +L  
Sbjct: 65  TCQKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKVLELPA 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+ITVY +D+EA+ LW  + G+ A++I+++   DN+W +   GPCGP SEI  D GE 
Sbjct: 121 DKLWITVYPKDQEAYDLWHDVCGVPAERIVKL--EDNWWEITSGGPCGPDSEIHIDLGEE 178

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   +  R++E+WNLVF Q+ ++       L   +IDTG+GLER+A+VLQ K
Sbjct: 179 RGCGSPDCGPGCDCGRFLELWNLVFTQYNKEPDGSYTPLQHKNIDTGLGLERVASVLQNK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +N++ DL   +I+ + +V+G  Y  +  + V+ +VI DH RS +F+I DGILP+NEGRG
Sbjct: 239 PSNFETDLIFPIIEYACRVSGKTYNADPKDDVSLKVIADHARSVTFMIGDGILPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRR++RRA+ + RLLG  +  ++     +    G  Y +L + K  IE+ +  E+  F
Sbjct: 299 YILRRVLRRAIRHGRLLGIRKEFLVGAADLVIDMYGDHYTDLREKKSYIEKVIAMEENSF 358

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++G  LL+  +  + K    +LNG+ AF+LYDT G P ++ ++IL  +G    D  
Sbjct: 359 LQTLEQGTDLLNQKIDAMRKAGSTVLNGEDAFQLYDTFGFPWELTEEILEEQGFTM-DKE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F +A+E QR RAR+                                 G   + E R + 
Sbjct: 418 GFEKAMEAQRERARSARNDK---------------------------EGKPVLYETRHLK 450

Query: 477 CQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                +D     +  V AI      + ++ A SG ++ V+   T F+AE GGQLGDTG  
Sbjct: 451 LGTLTVD-EASKNGKVAAIFPAHDTQPIQNAKSGDELAVILTNTAFHAEGGGQLGDTGRL 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + D     +TD +K  +G  +    +E+G L     +   ++ + R  ++ NH+ATHLLH
Sbjct: 510 VSDKGIFNVTDTKKLPDGYTIQLGTLEQGTLSVGDEVEFEVNLKRRADIARNHTATHLLH 569

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV+Q GS + PD LRFD +H  P+T  EL  +ED VN+ I   + V     
Sbjct: 570 AALKQVLGSHVNQAGSYVGPDRLRFDFSHFSPLTEEELAQVEDIVNEKILDAVDVEISQQ 629

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A   GA AL G KY   VRVV+V       +S  LCGG HVS+T  I L  I+SES
Sbjct: 630 ELEKAREMGAMALFGEKYGKIVRVVNVPG-----YSMELCGGVHVSNTSHIGLFKILSES 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
           S+ AG+RRIEA+TG+ A ++    +  +   A+ +K    N+V R+  + E+ R  +   
Sbjct: 685 SVGAGVRRIEAVTGRGALAYTRELENLIGEAATAVKGRPNNLVTRISALQEDLRAEKHRA 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
              ++KL             DV  ++ +  EV   D   L+ + D L+ K   G+++L  
Sbjct: 745 DEMEKKLVAAQAASVTADAKDVKGVAFLAQEVKVQDVDALRKMGDTLRDKTG-GVVVLAA 803

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K ++L++ +++ + +  +A  +A+  A+ + GG GGGRP MAQ+GG + +K  + 
Sbjct: 804 PMSADKVNILVMASKEAVKKGIHAGKIAKAVAQTM-GGNGGGRPDMAQAGGKDASKVQEG 862

Query: 889 IAGVASFLK 897
           +A     ++
Sbjct: 863 LARALELVE 871


>gi|332041455|gb|EGI77817.1| alanyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 888

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/923 (40%), Positives = 527/923 (57%), Gaps = 70/923 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 7   SVADIRKTFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++  AW+LLT  + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKIS---GLSAD------KIIRITTN-------DNFWSMAET 166
            +LY TVY ED+EA+ +W+ I    G + +      +IIRI  N       DNFW MA+T
Sbjct: 127 DKLYATVYLEDDEAYGIWEDIFVKAGWTPERIRQENRIIRIGDNKGGRYKSDNFWMMADT 186

Query: 167 GPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           GPCGPCSEIF+D G  I GG PGS  E+G+R+IEIWN VFMQFE         LP   +D
Sbjct: 187 GPCGPCSEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFEMHEDGTVTPLPAPCVD 246

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285
           TGMGLER+A +LQ   +NY+IDLF  LI+A+ +  G +   N   + RVI DH+R+++FL
Sbjct: 247 TGMGLERLAAILQHVHSNYEIDLFDALIKAAAREVGTQDLSN--PSLRVIADHIRATAFL 304

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  L   MG AYP L + + 
Sbjct: 305 VSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVGELVRLMGDAYPRLKEQQQ 364

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            I E L++E+ERF +TL  G+ +LD  L   G  ++L GDVAFKL+DT+G PLD+  D+ 
Sbjct: 365 RITEVLKAEEERFYETLANGMEILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVC 422

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +D   F  A+++Q+++ARA           K+  +L        F+GY+ L  
Sbjct: 423 RERGVT-VDEAGFKSAMDKQKNQARAAGK-------FKMDKALDYTGAGNVFVGYEKLE- 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ + A+   G    +  SGQ   VV D TPFYAE+G
Sbjct: 474 ----------------------AAAKIVALYVDGTPTAQLKSGQDGVVVLDTTPFYAESG 511

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G  +    R ++ D QK    +  HH  +  G L    ++   ++   R     
Sbjct: 512 GQVGDEGLIVAGPARFEVADTQKIKADVHGHHGTLAAGTLNVGDTVTAQVNLSRRAATMR 571

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS THL+H AL  +LG+HV Q GS +  D  RFD TH+ P+T A++  IE  VN+ I  
Sbjct: 572 NHSVTHLMHKALHEVLGAHVQQKGSLVDADKTRFDFTHNAPVTPAQIAEIERRVNEEILA 631

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N     R+++ E A A+GA  L G KY D VRV+ +        S   CGGTHV  TG+I
Sbjct: 632 NSATQARVLDIEAAKATGAVMLFGEKYGDTVRVLDIG------TSREFCGGTHVPRTGDI 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IV ES + AGIRR+EA+TG  A  +L   +  +   A  LK     + GR+ ++ +
Sbjct: 686 GLFKIVGESGVAAGIRRVEAVTGANALGYLQTLESTVHQAAGALKAPAAELQGRITQVLD 745

Query: 766 EYRKLQLIHA--KRKLQLNVEDLSCHKIADVN--------FMSHIISEVDSKELKSVMDA 815
           + + L+   A  K KL  +  D    +  +V          ++  +   D+K L+  +D 
Sbjct: 746 QVKALEKEIAALKGKLASSQGDELMAQAVEVKGRDGVALRVLAATLQGADAKVLRETLDK 805

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L+ K+++  I+L  + +  K  +   VT D + +  A +L    A+ +GG GG G+P MA
Sbjct: 806 LKDKLKTAAIVLATV-EGGKVQIAAGVTADSVGKIKAGELVNFVAQQVGGKGG-GKPDMA 863

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
            +GG + +   +A+  V  ++ +
Sbjct: 864 MAGGTDASGLPKALQAVQGWVAE 886


>gi|315645820|ref|ZP_07898941.1| alanyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315278581|gb|EFU41895.1| alanyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 875

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/913 (38%), Positives = 514/913 (56%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +TVY EDEEAFKLW +  GL   +II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPEKLSVTVYPEDEEAFKLWNEKIGLPESRIIKL--QDNFWEIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE    G P S      E ER++E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEEYGKGTPESEMFPGGENERWLEVWNLVFTQFNLNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D DLF+ +IQ + ++ G+KY       V  +VI DH+R+  F + DG+LP+
Sbjct: 234 ILQNVDSNFDTDLFQPIIQRTAELAGVKYNDSPEYDVALKVIADHIRTVVFAVGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTETVGDIMGVYYPEVVEKRAFIEKVVAT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KTL  GL +L  V +   K    +++G  AFKLYDT+G P D+ +D     GL 
Sbjct: 354 EEEQFHKTLSDGLGILAEVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASENGLT 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RARA      S   +     L +    ++F+GY+          
Sbjct: 414 -VDREGFDAAMEEQRDRARAARHETESMKIQG--GVLSDYTVKSEFVGYNDT-------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AIV      +    GQ  +V+ D TPFYAE+GGQ+ D 
Sbjct: 463 ---------------VREAKVLAIVSDDSFADSVSEGQTCQVILDATPFYAESGGQVSDQ 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +R ++  + K   G  VH   VE G L+   ++   ++   R  +  NH+ATH
Sbjct: 508 GVLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVTAQVNASMRNDIVKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++PVV 
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELGDIERRVNEQVWKSIPVVI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I +  ++
Sbjct: 628 ERKGIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVGNTSQIGIFKLL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES I +G+RRIEA+TG+ A  HL  Q + LK  A  LK +  +V  R+E + ++ + L 
Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEEQLDLLKQAAGLLKSNLTDVPKRIEGLNQQVKDLA 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L   +         ++ +   ++  +       L+ + D L+ K+   I++
Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTPLLAVEVQAGSMDGLRGIADELKGKLPDAILV 802

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G   + K + ++ V +DL+ + ++A  L +  A V GGGGG GRP MAQ+GG + +K 
Sbjct: 803 L-GSKADDKVNFVVAVPQDLVKKGYHAGKLVKEVASVCGGGGG-GRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFLKK 898
            QA+      + K
Sbjct: 861 AQALQHAEELVAK 873


>gi|218780784|ref|YP_002432102.1| alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|218762168|gb|ACL04634.1| Alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 875

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/908 (39%), Positives = 534/908 (58%), Gaps = 45/908 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R+ FLE+F+KN H ++ SSSL+P +DPTL+FTN+GMV FK  F G++K  Y   
Sbjct: 1   MTGNEVRSAFLEYFKKNDHRVVKSSSLVPQDDPTLLFTNAGMVQFKRTFLGEDKRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+L+WDLL  +F L 
Sbjct: 61  ATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKELAIELSWDLLVNKFGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L++++Y +D+EA  LW+   G+  ++I+R+   DNFWSM +TGPCGPCSEI  D+GE
Sbjct: 121 ADKLWVSIYLDDDEAGLLWRDKIGVPEERIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGE 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P  +   + +RY+EIWNLVFMQ+ +    +   LP+ SIDTGMGLER+ ++LQ 
Sbjct: 181 AFGCDSPDCAVGCDCDRYLEIWNLVFMQYNRDETGKMTPLPRPSIDTGMGLERICSILQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              NY  DLF  +     +++G K   +  + V  +VI DH R+++FL+ DGILP+NEGR
Sbjct: 241 ADTNYGTDLFTPIFNRIGELSGKKLGDSKTDDVCMKVIADHSRAAAFLVGDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R LG+ +  +   + A+C  MG AYP+L + +  I   + +E+ R
Sbjct: 301 GYVLRRIMRRAIRYGRQLGFNKSFLHETVAAVCDSMGGAYPDLTEGRSFITNVIVNEENR 360

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD+GL +L+  L  +    ++ ++G+V FKLYDT+G P+DI++D++  +G+  +D 
Sbjct: 361 FSETLDKGLSVLNDALGEMEAKGEKEISGEVIFKLYDTYGFPVDIVEDVVRDKGI-VLDR 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ+ ++R+     G+G   + + SL  +    +F GY    G          
Sbjct: 420 DGFETRMKEQKEKSRSTVAFEGAG---EAFASLSSQGIKCEFQGYHGTSGC--------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  +V+ G+ V+EA +G  V VV + TPFY E+GGQ+GD G   
Sbjct: 468 --------------SKVLLVVKDGKEVQEAQAGDAVSVVTEATPFYGESGGQMGDLGVIT 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG+ L++    K   G+ +H   V +G +    ++ L +D   R+  + NH+ATHLLH 
Sbjct: 514 ADGLELEVVKTLKDPTGLIIHEGKVVKGKIAKGQNVDLKVDEAARQATARNHTATHLLHA 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q GS + P+ LRFD TH  P+T  E   IE  VN+ I  NL V T  M+
Sbjct: 574 ALREVVGDHVKQAGSLVGPERLRFDFTHFSPLTPEETVKIETLVNERIRDNLDVNTVEMD 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A  SGA AL   KY D VRVVS+E       S  LCGGTH   +G++    IV ESS
Sbjct: 634 ADQARESGAMALFEEKYGDTVRVVSMEG-----FSKELCGGTHTERSGDVGFFVIVGESS 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI-- 773
           + AG+RRIEA+TG  A  ++ G    L  ++  LK     +  ++E++  + ++ +    
Sbjct: 689 VAAGVRRIEALTGAGAVEYVHGLMSNLNKVSGLLKEKPETLPDKIEKLLAQNKQQEKEIN 748

Query: 774 ---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
                         D    ++     ++  +       ++ + D  + K+QSGI++L G 
Sbjct: 749 ALKAKIAAKASESVDDEIREVRGAKMIAKKVEVDSPAAMRDLADKFRDKLQSGIVVL-GS 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               KA ++++VT+DL  +F A ++ +  AK +GGGGG GRP MAQ+GG       QA+ 
Sbjct: 808 EVNGKALLIVMVTKDLTKQFQAGNIIKHVAKEVGGGGG-GRPDMAQAGGSKPENLSQAME 866

Query: 891 GVASFLKK 898
                +++
Sbjct: 867 KAYQIVEE 874


>gi|220929512|ref|YP_002506421.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999840|gb|ACL76441.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 879

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 541/906 (59%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS+ L+P NDP+L+  NSGM P K  FTGQE+P  + VTT
Sbjct: 6   LNELRERYLKFFESKGHLRLPSAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  AI  AW+ +TK+ ++   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTKDLEMPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF +W K+ GL A++I+R+   DNFW     GPCGPCSEI+FD+G   
Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHGI-GPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +RY+E WN VF QF +  +     L   +IDTGMGLER+A + Q+  
Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNKDEQGNYTRLAHPNIDTGMGLERLACISQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D   ++++   +  G++Y+      V+ RV+ DH+RS++ ++ DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVWNILEFICKTAGVEYKKSEKTDVSIRVVTDHIRSTTMMVCDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +P +  +   +  E   AYPEL +    I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKADYIKKVIKIEEERFE 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+G+++L+  +  +   K  ++ G++ FKL+DT+G PLD+ ++I    GL GID   
Sbjct: 361 ATVDQGIIILNEFIDEIKAEKQNVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++ QR +AR       +       +   +K   T F+GY+                
Sbjct: 420 FKREMDAQRKKARDAHNSKDTSAWSDSVYDKLDKSQKTAFVGYENTASD----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S++  IV+ GEIV+ A  G ++ V+ D+TPFYAE GGQ+GDTG     
Sbjct: 469 ------------SVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDTGILTAQ 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             +++I +  K A+G F+H   VE GI+ T  ++  +ID + R  ++ NH+ THLLH AL
Sbjct: 517 NGKVKIENCTKTADGKFLHTGFVETGIVETGSTITASIDEKRRIAINRNHTVTHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG HV Q GS + P+ LRFD +H   +T  ELK +ED  N++I  ++ V  + M+ +
Sbjct: 577 RTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDITNEVILSSMNVNIKEMSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV VE      +S  LCGGTH+++T +  L+ I+ ES + 
Sbjct: 637 EAKKLGALALFGEKYGNTVRVVKVE-----DYSIELCGGTHLNNTAQAGLVKILGESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RR+EA+TG+ A  +   ++  L  +A  LK +  + + +VE + +E +  +    + 
Sbjct: 692 AGVRRLEALTGEAAIRYYTDRENLLNEVAQALKAAPQDSLKKVESLGQELKNAEKEIEQL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L   +      +  +I  V  ++     +D + L++  D L+ K+ SG+++L G   
Sbjct: 752 RNKLVSGEAESVLANAVEIKGVKVVTARFDTMDMEGLRNTGDMLKNKLGSGVVVL-GSGY 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            +K S ++  T+D++ +  ++ ++ +  AK  GGGGG GRP MAQ+GG + +K D+A+  
Sbjct: 811 GEKVSFIVTATKDVVAKGIHSGNIIKEVAKTAGGGGG-GRPDMAQAGGKDLSKIDEALKT 869

Query: 892 VASFLK 897
            AS ++
Sbjct: 870 AASIVE 875


>gi|308070327|ref|YP_003871932.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus
           polymyxa E681]
 gi|305859606|gb|ADM71394.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus
           polymyxa E681]
          Length = 877

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/911 (38%), Positives = 515/911 (56%), Gaps = 56/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF+  GH + PS+ L+P  DP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY EDEEA+KLW +  GL A++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE     +         E ERY+E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEAYGSDMTDPEMYPGGENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D D+F+ LIQ +  + G+KY  N  + V  +VI DH+R+ +F I DG+LP+
Sbjct: 234 ILQNVDSNFDTDIFQPLIQKTAAMAGVKYNENVDSDVALKVIADHVRTVAFAIGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG   P M  L+  +   MG  YPE++  +  I + +++
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKMLGMNRPYMFELVETVGDVMGVYYPEVVDKRDFIIKVIKT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  + +    +   +++G  AFKLYDT+G P D+ +D    +GL 
Sbjct: 354 EEERFHETLTDGLAILSDISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F++A++EQR RAR       S   +    +L +    ++F+GY+ L        
Sbjct: 414 -VDREGFDEAMQEQRKRARDAHQDSASMKIQG--GALSDLAVKSEFVGYNDLVT------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + AIV +  +V+    GQ  +VV D TPFYAE+GGQ+ D 
Sbjct: 465 -----------------ESKIVAIVYEDVLVDSVSEGQSCQVVLDVTPFYAESGGQVSDH 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +  ++  + K  +G  VH  +VE G L    ++   +D  +R ++  NH+ATH
Sbjct: 508 GLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN  I   L V  
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLDVNI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +   ++A A GA AL G KY D VRVV V     G +S  LCGG HVS+T +I L  +V
Sbjct: 628 ELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKLV 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEA+TG+    ++ GQ E LK  A  +K     V  R+E + ++ + L 
Sbjct: 683 SESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDLS 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L+V +         +   V  ++  +       L+++ D L+ K+    ++
Sbjct: 743 RENESLQSKLSVIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKGKLP-AAVL 801

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++G + + K + ++ V  +      +A  L +  A V GGGGG GRP MAQ+GG + +K 
Sbjct: 802 VLGAAMDDKVNFVVAVPAEYTKAGLHAGKLVKEIAAVCGGGGG-GRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFL 896
           D+A+      +
Sbjct: 861 DEALQRAHELV 871


>gi|167627901|ref|YP_001678401.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|205830099|sp|B0TZY8|SYA_FRAP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167597902|gb|ABZ87900.1| Alanine--tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 865

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/900 (42%), Positives = 535/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W    GL  ++IIRI +NDNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG   E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLER+A VLQ+
Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI+ +++VT    +  N  + +V+ DH+RS +FLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNA--DDINSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  +  L K +I++G++AF+LYDT+G PLD+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDTEIVSL-KSDIISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + + +Q+ R++        G     + S+      + F GY  L                
Sbjct: 417 EQMLKQKQRSKEA------GKFNVDYNSIINSQAKSDFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G+ V    +G    +V D+TPFYAE+GGQ+GD G   G G+
Sbjct: 455 -------IEDAKVLEIYQDGQPVNAIQAGSTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +GIL T   +   ++   R   + NHSATHLLH  L  
Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKVLKI 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILGSH  Q GS +  + LRFD TH K I+  E++ IE  VN  I  N PV T   ++E A
Sbjct: 567 ILGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  IVSES I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK- 778
           IRRIEAIT  +A  +    + KL ++    K +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 IRRIEAITANKAIKYTFATENKLAAIKEITKSNDSNLLDKLQSMLEQLKNQEKEIAKLKK 741

Query: 779 --LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             L     D+    I  +  +   +  VD K L+  +D  + K    + +L  I+ + K 
Sbjct: 742 DILSGANSDIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVLSTINAD-KV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V++ +     A D+A+  +  +  G GGGRP MAQ GG N    D+A++ + + +
Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLENHI 859


>gi|313201870|ref|YP_004040528.1| alanyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312441186|gb|ADQ85292.1| alanyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 874

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/920 (40%), Positives = 523/920 (56%), Gaps = 73/920 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-KEIRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L
Sbjct: 60  AASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L +TVY ED+EA+ +W +  G+ ADK+IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKEKLLVTVYAEDDEAYDIWTREMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER
Sbjct: 180 EIFYDHGAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ    NY+IDLF+ LI+A+ + T          + +V+ DH+R+ SFLIADG++P
Sbjct: 240 ISAVLQGVHANYEIDLFQALIKAAARETKTTDL--ESPSLKVLADHIRACSFLIADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL+  +  + +TL+
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNQTRVMDTLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF +T++ G+ +L+  L+       +  NG+ AFKL+DT+G PLD+  D+   R +
Sbjct: 358 QEEDRFFETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDV 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D  +F+ A+  Q+ +ARA      S        +L+ +  ATQF GY+ L       
Sbjct: 418 T-VDAAAFDAAMARQKDQARAAGKFKMSA-------NLEYEGAATQFHGYEKLESD---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              ++V A+ + G  V+    G+   VV D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK    +F HH +V  G +    SL   ++ + R     NHSAT
Sbjct: 507 SGELRASDGIFTVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +  +  RFD  H+ P+T  E++ +E  VN  I  N    
Sbjct: 567 HLMHKALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R+M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I
Sbjct: 627 ARVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             ES + AG+RR+EA TG+ A   +  Q   L  +A+ LK     V  ++ ++ +  + L
Sbjct: 681 TGESGVAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTL 740

Query: 771 QLIHA--KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K KL  +  D   ++      +  ++  +   D+  L+  MD L+ K++S  I
Sbjct: 741 EKELARLKSKLASSQGDDLVNQAVDLGGIKVLAATLEGADANTLRETMDKLKDKLKSAAI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQS 877
           +L   + + K S+   VT DL+ +  A +L    A         G+        P MA +
Sbjct: 801 VLAS-ANDGKVSLAAGVTPDLIAKLKAGELVNFVA---------GQVGGKGGGKPDMAMA 850

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG + ++  QA++ V  ++K
Sbjct: 851 GGTDASQLPQALSSVEGWVK 870


>gi|302342573|ref|YP_003807102.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301639186|gb|ADK84508.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 884

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/908 (40%), Positives = 534/908 (58%), Gaps = 43/908 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL +F   GH+++ SS L P +DP+L+FTN+GMV FK +F GQE+  Y    
Sbjct: 4   SGNELRGKFLAYFASKGHQVVASSPLAPKDDPSLLFTNAGMVQFKQVFLGQEQRPYTRAA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC RA GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ A+  AW+LLT  F LD 
Sbjct: 64  TSQKCFRASGKHNDLENVGRTPRHHTFFEMLGNFSFGDYFKQDAVTFAWELLTVGFGLDP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+++V+  D+EA +LW+   G+  ++I+R+   DNFWSM +TGPCGPCSEI  D G  
Sbjct: 124 EKLWVSVHHSDDEAAELWQSEVGVRPERIVRLGDKDNFWSMGDTGPCGPCSEIHIDMGPE 183

Query: 183 IPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G P  +   +  RY+E+WNLVFMQ+ +    +   LPK SIDTGMGLER+A V+Q  
Sbjct: 184 MGCGRPDCAVGCDCNRYLELWNLVFMQYNRDASGQTTPLPKPSIDTGMGLERIAGVVQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NYD DLF  +I+ + Q+T   Y  ++   ++ RVI DH R+ +FL+ADGILP+NEGRG
Sbjct: 244 RSNYDSDLFTPIIERACQITQTAYGQSDQADISLRVIADHARACAFLVADGILPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + R LG  +P +  +   +  EM  AYP L  A+  +++ + SE+ERF
Sbjct: 304 YVLRRILRRAARHGRKLGAQKPFLHQVAMKVIDEMMGAYPALGDARAFVDKVVTSEEERF 363

Query: 359 GKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD GL LL   +          L G+VAFKLYDT+G P+D+ + I     L G+D  
Sbjct: 364 NETLDTGLKLLAEAIEEAKAKGQTALPGEVAFKLYDTYGFPVDLTRTICEEEAL-GVDEP 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ +Q++R+RA   G G          L+ K   T F GYD L G           
Sbjct: 423 GFEAAMGQQKTRSRASWKGSGEEGLSGPLAELRAKGFKTAFTGYDGLEG----------- 471

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V A++  G++VE   +GQK  +V DQTPFY E+GGQ GD+G A G
Sbjct: 472 ------------QGQVVALIVDGQMVERVGAGQKALLVCDQTPFYGESGGQAGDSGRAEG 519

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +  ++   K    +  H   V  G L     L LT+D+  R + + NH+ATHLLH A
Sbjct: 520 PAGKAVVSTASKPGGDMVAHEITVSEGYLAVGERLNLTVDHGPRGETASNHTATHLLHAA 579

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS ++P  LRFD +H + +T  ++  +E  VN+ +  N+ V    M  
Sbjct: 580 LRQVLGDHVKQAGSMVSPQRLRFDFSHFEAMTPQQMGQVEAMVNEGVLANIAVTVTEMPA 639

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A+ SGA AL G KY D VRVV +        S  LCGGTHV  TG+I L  +V+ESS+
Sbjct: 640 EEALGSGAMALFGEKYGDTVRVVEIPG-----LSKELCGGTHVKRTGDIGLFKLVAESSV 694

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RR+EA+TG+ A + +   +++L   A  LK     +  RV ++    ++ +    +
Sbjct: 695 AAGVRRVEALTGRAALAAVRAMEDELHKAAGLLKARPTELAERVAKLMATLKEREREVEQ 754

Query: 777 RKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            K +L         +A V        +   +    +K L+++ D + +++ SG+++L G 
Sbjct: 755 LKAKLAGGGGGRDLLAGVVNHGDARVLVQKVEVDSAKALRALSDEIIERLGSGVLVL-GA 813

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + E KA +L  V++DL  RF+A ++ +  A ++GGGGG GRP MAQ+GG N +  DQA+ 
Sbjct: 814 AAEGKAFLLARVSKDLQGRFHAGNIVKELAPLVGGGGG-GRPDMAQAGGQNPDALDQAME 872

Query: 891 GVASFLKK 898
             ++ L +
Sbjct: 873 RASAMLAE 880


>gi|253999899|ref|YP_003051962.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253986578|gb|ACT51435.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 874

 Score =  912 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/920 (40%), Positives = 522/920 (56%), Gaps = 73/920 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF   GH+++ SSSL+P  DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKS-KEIRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ + L
Sbjct: 60  AASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L +TVY ED+EA+ +W K  G+ ADK+IRI  N       DNFW M +TGPCGPC+
Sbjct: 120 PKEKLLVTVYAEDDEAYDIWTKEMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCT 179

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLER
Sbjct: 180 EIFYDHGAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ    NY+IDLF+ LI+A+ + T          + +V+ DH+R+ SFLIADG++P
Sbjct: 240 ISAVLQGVHANYEIDLFQALIKAAARETKTTDL--ESPSLKVLADHIRACSFLIADGVIP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL+  K  + +TL+
Sbjct: 298 GNEGRGYVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNKTRVMDTLK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF +T++ G+ +L+  L+       +  NG+ AFKL+DT+G PLD+  D+   R +
Sbjct: 358 QEEDRFFETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDV 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D  +F+ A+  Q+ +ARA      S        +L+    ATQF GY+ L       
Sbjct: 418 T-VDAAAFDAAMARQKDQARAAGKFKMSA-------NLEYDGAATQFHGYEKLESD---- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              ++V A+ + G  V+    G+   VV D TPFYAE+GGQ+GD
Sbjct: 466 -------------------ALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G          + D QK    +F HH +V  G +    SL   ++ + R     NHSAT
Sbjct: 507 SGELRASDGIFSVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSAT 566

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +  +  RFD  H+ P+T  E++ +E  VN  I  N    
Sbjct: 567 HLMHKALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQ 626

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R+M  EDA  +GA  L G KY D VRV+ +        S  LCGGTHVS TG+I L  I
Sbjct: 627 ARVMGIEDAQKTGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVSRTGDIGLFKI 680

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             ES + AG+RR+EA TG+ A   +  Q   L  +A+ LK     V  ++ ++ +  + L
Sbjct: 681 TGESGVAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTL 740

Query: 771 QLIHA--KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K KL  +  D   ++      +  ++  +   D+  L+  MD L+ K++S  I
Sbjct: 741 EKELARLKSKLASSQGDDLVNQAVDLGGIKVLAATLDGADANTLRETMDKLKDKLKSAAI 800

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQS 877
           +L   + + K S+   VT DL+ +  A +L    A         G+        P MA +
Sbjct: 801 VLAS-ANDGKVSLAAGVTPDLIAKLKAGELVNFVA---------GQVGGKGGGKPDMAMA 850

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG + ++  QA++ V  ++K
Sbjct: 851 GGTDASQLPQALSSVEGWVK 870


>gi|119478765|ref|ZP_01618604.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119448344|gb|EAW29599.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 874

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/925 (39%), Positives = 531/925 (57%), Gaps = 79/925 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL FF++ GH  + SSSL+P NDPTL+FTN+GMV FK++F GQ+   Y  
Sbjct: 1   MKS-SEIREAFLCFFEEKGHTRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDHRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAFAWEFLTAAEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++   +L +TVY +D EA+ +WK    +  ++IIRI  N       DNFWSM +TGPCGP
Sbjct: 120 NIPADKLTVTVYADDSEAYDIWKNEMLVPEERIIRIGDNKGVKYASDNFWSMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D G  I GG PGS  E+G+R+IEIWN VFMQ+ + +      LP  S+DTGMGL
Sbjct: 180 CSEIFYDHGPEIEGGPPGSPDEDGDRFIEIWNNVFMQYNRSSDGTMADLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+A V+Q+  NNY+IDLF++L+ A+ +V G+        + RVI DH+RS +FL+ DG+
Sbjct: 240 ERIAAVMQDVHNNYEIDLFQNLLNAAAKVLGV--NDTTDTSLRVIADHIRSCAFLVVDGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   +G  E     L+  L  EMG+AYPEL + +  IE+ 
Sbjct: 298 LPSNEGRGYVLRRIVRRAVRHGNKMGAKEAFFYRLVAPLALEMGAAYPELPKLQSRIEKV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E+++F KTLD+G+ +L+  L +L   E + G+  FKLYDT G P+D+  DI   RGL
Sbjct: 358 LLTEEQQFAKTLDQGMRILEADLDNLSGKE-IPGETIFKLYDTFGFPVDLTGDIARERGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F +A+  QR RAR+ S       ++       +  G T F GYD L+      
Sbjct: 417 T-LDEPGFEKAMNAQRQRARSASHFKMELPSD------IDIDGETIFSGYDSLQAEC--- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                + A++  GE+V+    G++  VV   TPFY E+GGQ+GD
Sbjct: 467 --------------------EITALLNGGELVDRLTEGEQGVVVLASTPFYGESGGQIGD 506

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R  +++  K A+   +HH ++ +G L     + + +D   R+  ++NHSAT
Sbjct: 507 SGFMEVGATRFDVSETTKNADN-HLHHGVILQGGLSVGDKVSVQVDENVRQATTLNHSAT 565

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV+Q GS +    LRFD +H + +T+ +L  IE  VN  I  N  V 
Sbjct: 566 HLLHAALRQVLGDHVTQKGSLVDSKKLRFDFSHFEGLTADQLAEIETIVNQHIRHNSEVT 625

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T + + + A   GA  L G KY D+VRV+++        S+ LCGGTHVS TG I L+ I
Sbjct: 626 TTVTDMDHASELGAMMLFGEKYGDQVRVLAMG---DDGFSTELCGGTHVSRTGNIGLMRI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            +ES I AG+RRIEA TG  A +     + ++  +A+ +K S+ NV  +++++ E +++L
Sbjct: 683 TAESGIAAGVRRIEATTGATALALFSDTERRIGEIAALVKGSRENVASKIQQVLESHKQL 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   ++ K ++              +  +  ++  +   D K L   +  L+ K+ S ++
Sbjct: 743 EKELSRLKSKMASAAGSELADQAVDVNGIRVVACQLEAADMKTLDDTVSKLKDKLGSSVV 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL------------GGGGGGGRPH 873
           +L  I  + K ++   V+ DL+ +  A DL +  A ++            G         
Sbjct: 803 LLASIDGD-KINLACGVSSDLIKQVRAGDLMKYFAPLVGGKGGGKPDKAKGA-------- 853

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
                G +      A+A VA ++++
Sbjct: 854 -----GSDIAALPSALASVAVWVEE 873


>gi|323702194|ref|ZP_08113861.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532881|gb|EGB22753.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 877

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/909 (39%), Positives = 551/909 (60%), Gaps = 49/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF++ GH++LPS+SLIP NDP++++T +GMVPFK  FTGQ  P Y+ V
Sbjct: 1   MTGKEIREAFLRFFEERGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+++VGRT RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKEKAIPWAWEFVTEHLKLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+IT+Y +D+EAF +W  + G+ A++I+R+  + NFW +   GPCGPCSEI+ D GE
Sbjct: 117 ADKLWITIYLDDDEAFDIWHNVVGVPAERIVRMGKDTNFWEIGV-GPCGPCSEIYVDLGE 175

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ+
Sbjct: 176 TRGCGSPNCGVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLKNKGIDTGMGLERVASVLQQ 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N+D DLF+ ++  +  + G KY  +    +  +VI DH R+ +F + DG LP NEGR
Sbjct: 236 VNSNFDTDLFREIMDFTANMVGQKYGQDARVDLALKVIADHCRAVTFAVNDGALPGNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + R+LG  EP +  +  A+  +M  AYP+L Q    I   +R+E+ER
Sbjct: 296 GYVIRRLLRRAVRFGRVLGVHEPFLYKVAGAVINQMAIAYPDLKQRTDHILRVIRTEEER 355

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G  +L  ++S         ++G  AF+LYDT G PL++ ++I   +GL+ +D 
Sbjct: 356 FLETLAAGSDILASLISEARAAGKTEISGQDAFRLYDTFGFPLELTREIASEQGLS-VDE 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F  A+EEQR RAR+        +   + + +L+E+ G T+F+GY  L           
Sbjct: 415 DGFTAAMEEQRRRARSARQETEYLSERGVMYKALREELGETRFVGYGTL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+++ G     AV+G++VE++ D TP YAE+GGQ+ D    
Sbjct: 464 ------------TADANVLALLKDGLQEISAVAGEEVEIILDVTPCYAESGGQVADYATL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + ++I  V K  EG+FVH   V  G+L+   S+ + +D + R+  + NHSATHLLH
Sbjct: 512 TGPDLEVEIYSVNKPVEGLFVHRGKVVSGVLKRHDSVKVEVDARRRQDTARNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + PD LRFD TH   +T  ELK +E+ VN  +  NL V     
Sbjct: 572 KALKQVLGDHVNQAGSLVEPDRLRFDFTHYAALTPEELKQVEELVNQAVLANLSVDVFET 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A A GAAAL G KY  +VRVV +     G  S  LCGGTH++ T E+ L  I++E+
Sbjct: 632 SLSKAKAMGAAALFGEKYGKQVRVVKM-----GDFSLELCGGTHLTCTAEVGLFKIINET 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RRIEA+TG     +L  ++E+L+ +A+ +K  +  +V RVE + ++ + L+   
Sbjct: 687 SVGAGLRRIEAVTGPGVLRYLAAKEEQLQEIAAVIKSPEHELVRRVEALVQQNKSLEQEI 746

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + +L   ++        ++  V  ++ +++  D   L+S++D L+ K+ SG+I+L G
Sbjct: 747 EALRGKLARAEVQDILGQVQEVKGVPVLAAVVAAPDMDNLRSMVDMLRDKLGSGVILL-G 805

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               +K +++  VT+DL+ R  +A +L +  AK++GGGGG GRP MAQ+GG + +K  +A
Sbjct: 806 SKAGEKVNLVAAVTKDLVGRGLHAGNLVKQIAKMVGGGGG-GRPDMAQAGGKDPSKLKEA 864

Query: 889 IAGVASFLK 897
           I  V + ++
Sbjct: 865 IDQVIAVVE 873


>gi|242280583|ref|YP_002992712.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|242123477|gb|ACS81173.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 880

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/906 (41%), Positives = 530/906 (58%), Gaps = 40/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F+KNGH ++ SSSL+P +DPTL+FTN+GMV FKN F GQEK  Y   
Sbjct: 1   MKASEIREKFLKYFEKNGHTIVDSSSLVPKDDPTLLFTNAGMVQFKNTFLGQEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT+E  L 
Sbjct: 61  TTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFCWGFLTEELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+T+Y +D+EA +LW+K+    A++I R+   DNFWSM +TGPCGPCSE+  DQGE
Sbjct: 121 KDKLYVTIYTDDDEADELWQKVVNFPAERIYRLGEKDNFWSMGDTGPCGPCSEVHIDQGE 180

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+EIWNLVFMQ++Q  +  R  LP+ SIDTGMGLER+  V Q 
Sbjct: 181 DMSCGPNCGIGKCDCDRYLEIWNLVFMQYDQDEEGNRVPLPRPSIDTGMGLERITAVCQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +N++ D+F+ +IQA  +  G+KY+ ++      +VI DH RS +FLI D ILP+NEGR
Sbjct: 241 VQSNFETDIFQPMIQAVAKKAGVKYKEDSEIDTALQVIADHSRSIAFLITDQILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG T+P +      +  +M   +PEL+  K  +   ++ E+ER
Sbjct: 301 GYVLRRLIRRAFRFGRLLGLTDPFLHETTAMVVEQMSGQFPELLDNKDFMARMVKEEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD+GL++L+  +  L K    +++G+ AFKLYDT+G PLDI+ D+   +    +D 
Sbjct: 361 FSQTLDKGLIILEEEMEELKKAGKNLISGETAFKLYDTYGFPLDIINDVAEKQEFE-VDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN A++EQ+ RA+A   G G   +  I+  + E      F GY  L            
Sbjct: 420 DGFNAAMKEQKDRAKAAWKGSGEKNSGAIFRQVLEAGLKNSFTGYSEL------------ 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S IV  + ++GE +E    G    ++   TPFY E+GGQ+GDTG   
Sbjct: 468 ----------TTESRIVNLLSEEGEHLERITQGNGGWIITAATPFYGESGGQMGDTGAVG 517

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ +  K +  +      V  G L  E    L +  + R     NH+ THLLH 
Sbjct: 518 TLTGNAEVLETVKASADLTASKVFVSEGELLLEQEAKLEVSPETRVATERNHTVTHLLHA 577

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS + PD LRFD TH   +T  E+  +E+ VN  I  + PVV + M+
Sbjct: 578 ALKKVLGDHVKQSGSLVGPDRLRFDFTHIAAMTPEEIGEVENEVNRAILGDTPVVVQEMS 637

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A GA AL G KY D VRVV +  E     S  LCGGTH+ +TGE     I SES 
Sbjct: 638 NDEAAAKGATALFGEKYGDVVRVVEIPGE-----SMELCGGTHLKATGEAGTFVIQSESG 692

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA TG  +   L  Q  ++ + ++ LK + G +  R+  +  + ++L   + 
Sbjct: 693 VAAGIRRIEAATGWNSLKFLQEQRAEVVTSSAMLKAAPGQLADRIAALQSQVKELTKAND 752

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K + +L          S  +I  V  ++  +   + K L+   DAL+ K+ SGI  LV  
Sbjct: 753 KLQSKLASGAGADLMSSIEEIGGVKVLAAKLEVTNVKALRDQADALRSKMDSGIFCLVAQ 812

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + K S++I VT+DL DRF A  L +  A  +GGGGG GRP MAQ+GG N    ++A A
Sbjct: 813 VDDNKVSLIIAVTKDLHDRFQAGALIKPVAAEVGGGGG-GRPDMAQAGGTNPAGIEKAFA 871

Query: 891 GVASFL 896
            +   +
Sbjct: 872 TLKKLV 877


>gi|124267510|ref|YP_001021514.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1]
 gi|205830143|sp|A2SI90|SYA_METPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124260285|gb|ABM95279.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1]
          Length = 875

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/913 (40%), Positives = 520/913 (56%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ FL+FF+  GH+++ SS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRSAFLKFFESKGHQIVASSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L 
Sbjct: 61  TTAQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIAYAWELLTEVFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+++W K  G+ A++I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYAEDDEAYEIWNKQVGVPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D   E   G      E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHKLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLI---QASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
             VLQ   +NY+IDLF  L+   + +    G      +  + +VI DH+R+ SF I DG+
Sbjct: 241 TAVLQHVHSNYEIDLFVALLAAAKQAVDAAGAGDSDKDSPSLKVIADHIRACSFTIVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI RR + +   LG  +P    L+  L  +MG AYPEL +A+  + E 
Sbjct: 301 IPGNEGRGYVLRRIARRGIRHGYKLGARKPFFHTLVAELVRQMGEAYPELARAEARVTEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ERF +T+  G+ +L+  L+  G  + L+G+ AFKL+DT+G PLD+  D+   RG+
Sbjct: 361 LKQEEERFFQTIANGMEILESALA--GGAKTLDGETAFKLHDTYGFPLDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A++ QR +ARA      +         L+    AT F GY+ L       
Sbjct: 419 T-VDQAGFDAAMKRQREQARAAGKFKMAAG-------LEYAGAATTFHGYEHLVHEG--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S V A+   G  V  A +G    +V D TPFYAE+GGQ+GD
Sbjct: 468 -------------------SKVTAVYVDGSAVPSAKAGDDAVIVLDHTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       R+ + D QK    +F HH  V  G +R    L   +D + R +   NHS T
Sbjct: 509 GGELRNGTSRVIVEDTQKIQADVFGHHGRVVEGEIRVGDVLNARVDGEQRARTVRNHSVT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +  +  RFD  H+ P++ A++  +E  VN  I  N P  
Sbjct: 569 HLMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPMSDAQIAKVEAIVNAEILANAPTQ 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R++  E+A   GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +
Sbjct: 629 ARVLPMEEAQKLGAMMLFGEKYGDEVRVLDIGS------SRELCGGTHVQRTGDIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+ES + AGIRR+EAITG  A +++   +  +  LA  LK +   V GRV  + E+ R L
Sbjct: 683 VAESGVAAGIRRVEAITGDNALAYVQQLEGTVAGLAGALKAAPAEVPGRVAAVLEQLRTL 742

Query: 771 QLIHA--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K KL  +  D    +  DV  +  +   +   D+K L+  +D L+ K++S  I
Sbjct: 743 EKELAALKGKLASSQGDGLLAQAVDVKGLKVLAARLEGADAKALRDTLDQLKNKLKSAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  + +  K  +   VT D   R  A +L    A+ +GG GG G+P +A +GG +    
Sbjct: 803 VLA-VVEGGKVQLAAGVTADATARVKAGELVNFVAQQVGGKGG-GKPDLAMAGGTDPAGL 860

Query: 886 DQAIAGVASFLKK 898
             A+A VA ++ +
Sbjct: 861 GAALASVAGWVGE 873


>gi|332112510|gb|EGJ12303.1| alanyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 877

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/915 (41%), Positives = 537/915 (58%), Gaps = 58/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+TFL+FF+  GH ++PSS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRSTFLKFFESKGHTIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWELLTEHFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L+ TVY ED+EA+ +W K+ GL A++I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 121 KDKLWATVYAEDDEAYDIWLKVIGLPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS E +G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFYDHGPDVAGGPPGSPEQDGDRYIEIWNNVFMQFNRTEDGTMHRLPKPSVDTGMGLERL 240

Query: 234 ATVLQEKTNNYDIDLFKHLI---QASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           A VLQ   +NY+IDLF +L+   +++ +  G +       + +VI DH+R+ +F +ADGI
Sbjct: 241 AAVLQHVHSNYEIDLFVNLLAAARSAVEAAGGQDVDAESPSLKVIADHIRACAFTVADGI 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI RRA+ +   LG  +P    L+ AL  EMG AYPEL + KL I E 
Sbjct: 301 IPGNEGRGYVLRRIARRAIRHGYKLGARKPFFHTLVEALAVEMGEAYPELRRDKLRITEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L++E+ERF +T+  G+ +L+G L+      +++G+ AFKL+DT G PLD+  D+   RG+
Sbjct: 361 LKAEEERFFQTIAHGMEILEGALA--SGATVIDGETAFKLHDTFGFPLDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A++ QR +AR+ +         K+   L     AT F GY+ L       
Sbjct: 419 T-VDGAGFDAAMQRQREQARSKAK-------FKMAQGLAYDGEATTFHGYEHLVCEH--- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + V AI   G  V +A +G  V VV D TPFYAE+GGQ+GD
Sbjct: 468 -------------------AKVSAIYVDGTPVTKAQAGDDVVVVLDHTPFYAESGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G       RL + D  K    +  H A +  G +    +LV  +D + R +   NHSAT
Sbjct: 509 RGELRNGRARLVVEDTVKIQAQVHGHQARIVEGEIEIGDTLVARVDAELRAKTIRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG HV Q GS +TP+  RFD  H+ P+T+A++  +E  VN  I  N    
Sbjct: 569 HLMHKALREVLGGHVQQKGSLVTPERTRFDFAHNAPVTAAQIAQVEALVNAEILANAATQ 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            R M  ++A   GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  I
Sbjct: 629 ARTMAIDEAQKLGAMMLFGEKYGETVRVLDIGG------SRELCGGTHVQRTGDIGLFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            +E  + AGIRR+EA+TG  A ++L   +  L  +A+ LKV+   V  RV+ + E+ R L
Sbjct: 683 AAEGGVAAGIRRVEAVTGDNALAYLQQLEGALGGVAATLKVTPAEVPARVDAVLEQLRAL 742

Query: 771 --QLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             ++   K +L     D    S   +  +  ++  ++  D+K L+  MD L+ K++S  I
Sbjct: 743 DKEITALKGRLASAQGDELLASAVDVKGIKVLAATLAGADAKALRETMDKLKDKLKSAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L  +    K  +   VT DL+   +  A +L    A  +GG GG G+P +A +GG +  
Sbjct: 803 VLAAV-DGAKVQLAAGVTGDLVAGGKLKAGELVNFVAGQVGGKGG-GKPDLAMAGGTDAA 860

Query: 884 KADQAIAGVASFLKK 898
              QA+A VA ++ +
Sbjct: 861 ALPQALASVAGWVGE 875


>gi|307265211|ref|ZP_07546770.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390157|ref|ZP_08211718.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|306919833|gb|EFN50048.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993805|gb|EGD52236.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 877

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/907 (39%), Positives = 534/907 (58%), Gaps = 51/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +L   +S L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 ETIDQGLTILQDYISELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      S   + I+ +L +    T+F+GYD                
Sbjct: 420 YTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYESD----------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    +
Sbjct: 467 ------------SKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDKGVLENE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++ D  KK    F+H   +ERG++     +   ID  +RR  + NH+ATHLLH AL
Sbjct: 515 NALIKVNDC-KKIGDKFIHTGTIERGLISVGDEVKAQIDVVSRRNAARNHTATHLLHKAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       +
Sbjct: 574 KEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYD 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++ 
Sbjct: 634 EAVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVG 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIHA 775
           AG+RRIEA+TG  A  +L  ++E LK  +  LKV    ++ ++E + +  + +  ++   
Sbjct: 689 AGLRRIEALTGLAAIKYLGEKEEILKEASDLLKVQDKEIISKIESLQQVLKTKDKEIEQL 748

Query: 776 KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K K+   + D   +       +  +   + + DS+ LK++ D L+ K++   ++L   + 
Sbjct: 749 KIKMASILADSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKIAAVVLASSTP 808

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E KA  + + T+D++ +  +   + +   K +  G GGGRP MAQ  G N +K D+A+  
Sbjct: 809 E-KAIFVGMATKDVVQKGIDMGAIIKEVCK-VSEGNGGGRPDMAQGTGKNLSKVDEALNK 866

Query: 892 VASFLKK 898
               +K+
Sbjct: 867 AIDIVKE 873


>gi|241668454|ref|ZP_04756032.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876987|ref|ZP_05249697.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843008|gb|EET21422.1| alanyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 865

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 534/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W    GL  ++IIRI +NDNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG   E+G+RYIEIWN+VFMQF +        LPK S+DTGMGLER+A VLQ+
Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYDIDLF+ LI+ +++VT    +  N  + +V+ DH+RS +FLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNA--DDINSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  +     L+  L  +MG AYP+LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T++ G+ + D  ++ L K + ++G++AF+LYDT+G PLD+  D+   +GL  +D  +F 
Sbjct: 359 RTIENGIKIFDTEIASL-KCDTISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + + +Q+ R++        G     + S+      + F GY  L                
Sbjct: 417 EQMLKQKQRSKEA------GKFNVDYNSIINSQAKSNFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G+ V    +     +V D+TPFYAE+GGQ+GD G   G G+
Sbjct: 455 -------IEDAKVLEIYQDGQPVNTIQAESTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +GIL T   +   ++   R   + NHSATHLLH AL  
Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKALKI 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSH  Q GS +  + LRFD TH K I+  E++ IE  VN  I  N PV T   ++E A
Sbjct: 567 VLGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  IVSES I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK- 778
           IRRIEAIT  +A  +    + KL ++    K +  N++ +++ + E  +  +   AK K 
Sbjct: 682 IRRIEAITADKAIKYTFAIENKLAAIKEITKSNDSNLLDKLQSMLEHLKNQEKEIAKLKK 741

Query: 779 --LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             L     ++    I  +  +   +  VD K L+  +D  + K    + +L  I+ + K 
Sbjct: 742 DILSGANSNIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVLSTINAD-KV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V++ +     A D+A+  +  +  G GGGRP MAQ GG N    D+A++ +  ++
Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLEKYI 859


>gi|156743640|ref|YP_001433769.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|205830195|sp|A7NQA5|SYA_ROSCS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156234968|gb|ABU59751.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 905

 Score =  910 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/924 (39%), Positives = 526/924 (56%), Gaps = 67/924 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR  FL FF++ GH  +PSSSLIP NDPTL+FTNSGMV FK+ F G E+  Y   T
Sbjct: 5   SSAAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI +AW+LLTK FDL  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIPMAWELLTKVFDLPV 124

Query: 123 RRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV++ D+E      A +LW   +G   ++++R    DNFW MA+ GPCGPCSEI 
Sbjct: 125 ERLWFTVFEGDDEVPPDDEAAQLWVA-AGADPERVLRFGRKDNFWVMADAGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQFE+        L + S+DTGMGLERMA 
Sbjct: 184 IFIGDDLKEMSAKGVNSDDPNYVEIWNNVFMQFER---STMQPLHRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + YD DLF  LI+    + G        ++   R + DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYDTDLFIPLIERQLALLGADEPTYRAHVAPFRAVADHSRAVAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA+   R +G+ +P +  +   +  +MG+ YPEL +    I ET+  
Sbjct: 301 NTGRSYVLRRILRRAVYQGRTVGFEKPFLADVAAVVIEQMGAVYPELRERADFILETVDL 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  G+ +L  V+  +      ++ GD AF L DT+G PLD+ Q I    GL 
Sbjct: 361 EERQFLRTLSGGVSILKSVIERVRAVGGTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   + + +EEQR+R R  +    +   E  W  +      T+F GY  + GS     
Sbjct: 421 -VDEAGYERRMEEQRARGRRAAQFKRAADAE-AWADI--DLPPTRFTGYLGVSGS----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V+A++  G+ V EAV+GQ+V++  D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------GTVQALIVAGDQVAEAVAGQQVQIALDSTPFYAESGGQIGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  IG   R +I DVQ+   G+ VH+ +VE G +    ++   +D   R  +  +H+ATH
Sbjct: 514 GVLIGPRGRARIDDVQRPVPGVIVHYGVVEEGAIAVYETVEAQVDSVRRAAIMRSHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG H +Q GS + PD LRFD TH++P+T  +L+ IE  VN  I  + PV  
Sbjct: 574 LLHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPVTPEQLREIERRVNAWIRADTPVAW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-----------------SSALC 694
           + +  + A+ +GA AL G KY D VR+V++   +G                    S  LC
Sbjct: 634 QELPYQAALEAGAIALFGEKYGDVVRMVTIGCVNGNDALSPAAIAERQRAGFRMCSRELC 693

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV  +GEI L  IVSESS+ AG+RRIEA+TG  A   +  Q   L ++A+ +     
Sbjct: 694 GGTHVGRSGEIGLFRIVSESSVAAGVRRIEALTGAEAEQWVDAQIATLHNIAARVGAPPS 753

Query: 755 NVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL 809
            +  R+E +  E ++ Q    +   R+ + N+E L      + D+ F++  +   D+  L
Sbjct: 754 QLGERIEALLAELKQRQRALDELHARQARSNLEGLLANVQAVGDIRFLAAQVEAPDTARL 813

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           + + D L+ K+ SG+++L  +  + KA +L + T DL   R +A +L +  A ++ GG G
Sbjct: 814 REMGDWLRDKLGSGVVVLAAVI-DGKAQILAMATPDLAGRRIHAGNLVKALAPIV-GGSG 871

Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892
           GGRP MAQ+GG        A+  V
Sbjct: 872 GGRPDMAQAGGREVAHIPDALEHV 895


>gi|86160202|ref|YP_466987.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496877|sp|Q2IG40|SYA_ANADE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85776713|gb|ABC83550.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 905

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/932 (39%), Positives = 535/932 (57%), Gaps = 74/932 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  F  +F+++GH  + SSSL+P NDPTL+FTN+GMV FK++FTG+E+  Y   
Sbjct: 4   PTAAEIRELFQRYFEEHGHRRVASSSLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+L+T      
Sbjct: 64  TTAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKADAIAWAWELVTSPAWLG 123

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + + RL  TV+        DEEAF+LW K  G+  ++I ++   DNFW+M +TGPCGPCS
Sbjct: 124 IAKDRLAATVFAGEGTLPWDEEAFELW-KAQGVPVERIHKLGAKDNFWAMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLP-------GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           E+ + QG  +P           G + + +R++EIWNLVFMQFE+        LPK SIDT
Sbjct: 183 ELHYFQGNDVPCAEEQAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDT 242

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSF 284
           G GLER+A V Q K +NYD DLF+ +I A E ++  +Y+   ++ V+ RVI DH R+++F
Sbjct: 243 GAGLERLAAVAQGKRSNYDTDLFRSIIHAVEGLSDKRYDAASDDGVSMRVIADHARATTF 302

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           L+ DG+LP+NEGRGYVLRRIMRRA+ + + LG   P +  +  A+  EMG+AYPE  + +
Sbjct: 303 LVGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLERPFLAAVCGAVIDEMGAAYPETRENR 362

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL----------------GKDEILNGDVAF 388
             IE+  + E+E F +TLD+GL +L+G +  L                    I++G VAF
Sbjct: 363 AFIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDATHDGKPATPAPDRARPIIDGKVAF 422

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +LYDT G PLD+ + I   RG   +D   F++ + EQ  RAR+   G G    + +   +
Sbjct: 423 QLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQ--RARSEWKGSGEQGVDDLHKQI 479

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
             + G  +F+GY+L                           + VKAI+  G  V  A  G
Sbjct: 480 AGELGEVKFLGYELPAAR-----------------------AQVKAILANGARVARAGKG 516

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            KVE+V D TPFY E+GGQ+GD G   G G+ +++ D Q+   G+  H   V RG +   
Sbjct: 517 DKVEIVTDATPFYGESGGQVGDVGHITGAGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVG 576

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++ L++D + R  +  NHSATHLL  AL  +LG HV Q GS + PD LRFD +H +P+T
Sbjct: 577 DAVELSVDDRRRDLVRANHSATHLLQLALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVT 636

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             EL ++E  VN+++ +N    T ++  E+A  +GA  + G KY D VRVV +       
Sbjct: 637 EEELAAVERRVNELVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIGP----- 691

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHV  +G+I    I SE SI +G+RR+ A TG RA      + E+L+  A+ 
Sbjct: 692 -SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAAL 750

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISE 803
           LK     V  ++E+     + L+    + + +               +     ++  +  
Sbjct: 751 LKAGALEVSQKIEQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAARVEG 810

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D K L+ + D L+ ++  G++ L G  ++ KA +L+ VT DL  R  A DL + +AK++
Sbjct: 811 -DGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAAKLV 868

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            GG GGG+P MAQ+GG +    ++A+  VA  
Sbjct: 869 -GGSGGGKPDMAQAGGSDPAGLEKALEKVAEL 899


>gi|312171401|emb|CBX79660.1| Alanyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 833

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/869 (43%), Positives = 526/869 (60%), Gaps = 56/869 (6%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F GQ+K  Y    + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDVFLGQDKRNYTRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  AI  AW+LLT  + F L + +L++TVY+ D+EAF +W+K  G+  ++IIRI  N   
Sbjct: 61  KHEAIAFAWELLTSSQWFGLPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGS 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQN 212
               DNFW M +TGPCGPCSEIFFD G+ I GG PGS E +G+RYIEIWN+VFMQF ++ 
Sbjct: 121 AYASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRKA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LPK S+DTGMGLER+  VLQ   +NY+IDLF  LIQ+  QVTG     N   + 
Sbjct: 181 DGTMLPLPKPSVDTGMGLERITAVLQHVNSNYEIDLFAQLIQSVAQVTGATDLSNK--SL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG        LL  L   
Sbjct: 239 RVIADHIRSCAFLIADGVIPSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLLAPLIAV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG+A  +L   +  +E+ LR+E+E+F KTL+RGL LLD  L +L + ++L+G+  F+LYD
Sbjct: 299 MGAAGDDLKSQQSQVEQVLRTEEEQFAKTLERGLALLDEELENL-QGDMLDGETVFRLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T G P+D+  D+   R L  ID   F +A+E+QR RAR  S G GS     I        
Sbjct: 358 TFGFPVDLTADVCRERNLK-IDEAGFERAMEQQRQRARDAS-GFGSDYNNVIRID----- 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GY  L+                       +++ + AI   G+      +GQ+  
Sbjct: 411 QASEFKGYQQLQ-----------------------LNAAISAIFVDGQAANTISAGQEGV 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D TPFYAE+GGQ+GDTG   G+     +++ QK A+ I  H   +  G LR    + 
Sbjct: 448 IVLDATPFYAESGGQVGDTGKLQGNSASFIVSNTQKYAQAI-GHSGKLAIGELRVGDCVA 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   R ++ +NHSATHLLH AL  +LG HVSQ GS +    LRFD +H + +T  E 
Sbjct: 507 AQVDEARRARIRLNHSATHLLHAALRQVLGQHVSQKGSLVNDTYLRFDFSHFEAMTPQET 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + +E+ VN  I +NLP+ T IM  E A A GA AL G KY+D VRV+S+     G  S+ 
Sbjct: 567 RQVEEIVNAQIRRNLPIETNIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTE 621

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTH S TG+I L  I SES   AG+RRIEA+TG+ A + L  Q+E+L  +A  +K +
Sbjct: 622 LCGGTHASRTGDIGLFRITSESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKAN 681

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSK 807
             N+  +V  + +  R L+    + K Q   ++          +     +   +S+V+ K
Sbjct: 682 HSNLNEKVRALIDHARALEKQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPK 741

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L++++D L+ ++ S II+L  ++ + K S++  VT+DL DR  A +L    A+ + GG 
Sbjct: 742 MLRTMVDDLKNQLGSAIIVLATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV-GGK 799

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGGRP MAQ+GG +      A+AGV S++
Sbjct: 800 GGGRPDMAQAGGTDAMALPAALAGVESWV 828


>gi|301064400|ref|ZP_07204825.1| alanine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300441482|gb|EFK05822.1| alanine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 880

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/906 (40%), Positives = 533/906 (58%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  FL++F K+ H ++ SSSLIP +DPTL+FTN+GMV FKN F G E   Y   
Sbjct: 1   MNFREIRQQFLDYFSKHDHRIVESSSLIPRDDPTLLFTNAGMVQFKNAFLG-ENVGYTRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+  W+LLT+ + L 
Sbjct: 60  ATAQKCVRAGGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKEEAIRWGWELLTEGYGLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY +D+EA+ +W+K  GL AD+I+R+   DNFW+M +TGPCGPCSEI  DQG 
Sbjct: 120 AEKLHVSVYKDDDEAYDIWQKEIGLPADRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGP 179

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +RY+EIWNLVF QF++    +   LPK +IDTGMGLER+A V+Q 
Sbjct: 180 SVGCGRPECACGCDCDRYLEIWNLVFTQFDRSPDGKLTPLPKPNIDTGMGLERLAAVIQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             +NYD DLF+ +I   E ++  KY  N    V  RVI DH R+ SFLI DGI+P+NEGR
Sbjct: 240 VKSNYDTDLFRDIITRIESLSQKKYGSNERMDVAFRVISDHARAVSFLIGDGIMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  + + LG  +  +  +   +   MG  Y EL++A+  I   + +E+ R
Sbjct: 300 GYVLRRIIRRASRFGQALGLEDIFLRSICDHVIELMGRDYGELVRARSFILGVVENEERR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL   + +L   +  L + E   + G+V FKLYDT+GL +D+++D+     L G+D+
Sbjct: 360 FADTLRYSMKVLREEIEQLREKEKAAIPGEVVFKLYDTYGLAVDLVEDVARDENL-GVDL 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +  A+  QRS ++    G G     K +  L  +   ++F GYD L            
Sbjct: 419 EGYKDAMNRQRSLSQESWKGSGEAAVPKTFRDLLNRNLTSRFTGYDTLE----------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + ++V     V     G K +++ DQT FYAE+GGQ+GDTG  +
Sbjct: 468 ------------AESRILSLVLGDLEVNTIYKGDKAQMILDQTAFYAESGGQVGDTGLIM 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ +  K  + + VH   +E G L    S+  ++D  +R  ++ +HSATHLLH 
Sbjct: 516 NGIAHFRVENTFKYGQDLIVHEGFLEEGELSVGDSVQASVDTAHRMAVAASHSATHLLHA 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV Q GS + P  LRFD +H   +++  L  +E  VND I +NLP+ TRIM+
Sbjct: 576 ALREILGDHVKQAGSRVAPGRLRFDFSHFTQVSTENLIEVERWVNDRIRENLPLDTRIMD 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +E A+ +GA A+   KY D+VR+V +    G   S  LCGGTH   TG+I +  I+SE +
Sbjct: 636 KEAAMKTGAMAIFEEKYGDKVRIVDI----GEGVSRELCGGTHTRRTGDIGVFRILSEGA 691

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + A +RRIEA+TG  A  +   +DE+LK+ A  LKV+   ++ +++ + EE R+ +    
Sbjct: 692 VAANVRRIEALTGASALLYDQERDERLKNAAGLLKVAPDQLIEKLKRLLEEAREKEREIE 751

Query: 776 KRKLQL--NVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGI 830
             K +L           + ++  +S +  E+++   KEL+   D ++ ++ SGI++L G 
Sbjct: 752 SLKGRLFTEKSADLMQDVREITGISVVAKELEAETPKELREAADRIKDRLGSGIVLL-GA 810

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K  ++  VT+DL +RFNA  + R  + ++GG GG GRP MAQ GG    K  +A  
Sbjct: 811 KNGGKVMLICAVTKDLTNRFNAGQIIRELSGIVGGKGG-GRPDMAQGGGDRPEKLTEAFN 869

Query: 891 GVASFL 896
            + + +
Sbjct: 870 SLETLI 875


>gi|330825460|ref|YP_004388763.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|329310832|gb|AEB85247.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 873

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/909 (40%), Positives = 522/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +I+  W+LLT+ + L  
Sbjct: 66  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIRWGWELLTQVYKLPP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + T      N   + +VI DH+R+++FL+ADG++P N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLAN--PSLKVIADHIRATAFLVADGVIPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E LR E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LDG L+  G    L GDVAFKL+DT+G PLD+  D+   RG+ G+D
Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERGV-GVD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A +F GY+ L G         
Sbjct: 421 EAGFAAAMEHQKSTARAAGK-------FKMDRALEYGGAANRFTGYEHLSG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V    +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------TAKIVALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D QK    ++ HH ++  G L    ++   +D   R     NHS THL+H
Sbjct: 511 TAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  I  N     R+M
Sbjct: 571 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIERRVNAEILANTATDARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 631 DIESAQKTGAVMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVAEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L G +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 685 GVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L             ++  +  ++  +   D+K+L+  MD L+ K+++  I+L  
Sbjct: 745 AQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D   R  A +L    A  +GG GG G+P MA +GG +     QA+
Sbjct: 805 VDGD-KVQLAAGVTADSTARVKAGELVNFVAGQVGGKGG-GKPDMAMAGGTDAEALPQAL 862

Query: 890 AGVASFLKK 898
           A VA+++ +
Sbjct: 863 ASVAAWVGE 871


>gi|329926749|ref|ZP_08281157.1| alanine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938949|gb|EGG35317.1| alanine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 875

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/913 (38%), Positives = 515/913 (56%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +TVY EDEEA+KLW +  GL  ++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPEKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE      P S      E ER++E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEGYDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D DLF+ +IQ + ++ G+KY       +  +VI DH+R+ +F + DG+LP+
Sbjct: 234 ILQNVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIAT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KTL  GL +L  V +   K    +++G  AFKLYDT+G P D+ +D     GL 
Sbjct: 354 EEEQFHKTLSDGLNILADVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASEHGLT 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A++EQR RARA      S   +     L +    ++F+GY+          
Sbjct: 414 -VDREGFDAAMKEQRDRARAARHETESMKVQG--GVLSDYTVKSEFVGYNDTVS------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AIV      +    G+  +V+ D TPFYAE+GGQ+ D 
Sbjct: 465 -----------------EAKVLAIVSGDSFADSVSEGETCQVILDVTPFYAESGGQVSDQ 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +R ++  + K   G  VH   VE G L+   ++   +D   R  +  NH+ATH
Sbjct: 508 GMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDTAMRNDIVKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++PVV 
Sbjct: 568 LLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVPVVI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I +  ++
Sbjct: 628 ERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIFKLL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES I +G+RRIEA+TG+ A  HL GQ + LK  A  LK +  +V  R+E + ++ + L 
Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVKDLA 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L   +         ++ + + ++  +       L+ + D L+ K+   I++
Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPETILV 802

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G     K + ++ V ++L+   ++A  L +  A V GGGGG GRP MAQ+GG + +K 
Sbjct: 803 L-GSKAGDKVNFVVAVPQELVKQGYHAGKLVKEVASVCGGGGG-GRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFLKK 898
            QA+      + +
Sbjct: 861 AQALQHAEDLVAR 873


>gi|157804247|ref|YP_001492796.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|205830191|sp|A8F078|SYA_RICCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157785510|gb|ABV74011.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 878

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 568/901 (63%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKTNNHTHVPASSLIPQNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTK+F+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKKFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 NKLYVTIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEN 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEI N+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  +LQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEILNMVFMQYEQVDKDTRIELPQKSIDTGMGLERMTAILQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQKIIDYTENIVKVKVKGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +++  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNIYPELKRSESFISNILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K + L+G++AFKLYDT+G PLD+ +DIL    ++ +D   F + 
Sbjct: 365 LERGLKLLSEETETLTKGDKLSGEIAFKLYDTYGFPLDLTKDILKNYDIS-VDHQGFKEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T ++WF +KE+YG+T+F+GY L                   
Sbjct: 424 MLAQKERARKSWLGSGEYKTNQLWFDIKEQYGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     +  +++   +V        +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIVLIKDNNLVNNIQETDTQFLLISNQTPFYGESGGQMGDNGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGKIHVGENANFSIDVKYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD+++SK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISYSKAVTNEEITLIEDKVNEIIRANHEVNTTLMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G +S  LCGGTHV   G+I    I +ES+I AGI
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GNNSLELCGGTHVRRLGDIGCFKITNESAIAAGI 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  ++  LKS+ S LK ++  ++ +V  I E  + L+    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKENLLKSVESSLKTNKNELITKVNNILERNKGLEKELEKVHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L ++  +    +I  V  +   I  +++K L+   + L KK++  I++ + +    K
Sbjct: 756 HLDLSIDQINKEAEEIKGVKLIYQYIENLNNKVLRQAAENLTKKVEDLIVVYI-VGNSDK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D+FNAV++A+  +  LGG GGGG+  +AQ+GG +  K ++    + S 
Sbjct: 815 LSITVAVSKAITDKFNAVNIAKELSLFLGGTGGGGQASLAQAGGHDIGKLNKIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|319763265|ref|YP_004127202.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|317117826|gb|ADV00315.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC]
          Length = 873

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/909 (40%), Positives = 521/909 (57%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+FF   GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K  Y    
Sbjct: 6   SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +I   W+LLT+ + L  
Sbjct: 66  SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIHWGWELLTQVYKLPP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185

Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D   E   G      E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF  LI+A+ + T      N   + +VI DH+R+++FL+ADG++P N
Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLAN--PSLKVIADHIRATAFLVADGVIPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E LR E
Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LDG L+  G    L GDVAFKL+DT+G PLD+  D+   RG+ G+D
Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERGV-GVD 420

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+E Q+S ARA           K+  +L+    A +F GY+ L G         
Sbjct: 421 EAGFAAAMEHQKSTARAAGK-------FKMDRALEYGGAANRFTGYEHLSG--------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V    +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 465 --------------TAKIVALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                R  + D QK    ++ HH ++  G L    ++   +D   R     NHS THL+H
Sbjct: 511 TAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHLMH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  I  N     R+M
Sbjct: 571 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIECRVNAEILANTATDARVM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHV  TG+I L  +V+E 
Sbjct: 631 DIESAQKTGAVMLFGEKYGETVRVLDIG------TSRELCGGTHVQRTGDIGLFKVVAEG 684

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+TG+ A ++L G +  +   A+ LK     +  R+    ++ + L+   
Sbjct: 685 GVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEKEL 744

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A+ K +L             ++  +  ++  +   D+K+L+  MD L+ K+++  I+L  
Sbjct: 745 AQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVLAA 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT D   R  A +L    A  +GG GG G+P MA +GG +     QA+
Sbjct: 805 VDGD-KVQLAAGVTADSTARVKAGELVNFVAGQVGGKGG-GKPDMAMAGGTDAEALPQAL 862

Query: 890 AGVASFLKK 898
           A VA+++ +
Sbjct: 863 ASVAAWVGE 871


>gi|115375322|ref|ZP_01462586.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367695|gb|EAU66666.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 922

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/919 (41%), Positives = 542/919 (58%), Gaps = 56/919 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF+  GH  + SS L+P NDPTL+FTN+GMV FK++FTG+EK  Y   T
Sbjct: 31  TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 90

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L  
Sbjct: 91  TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 150

Query: 123 RRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++ ++      EAF+LW +  G+  D+I+++   DNFW+M +TGPCGPCSEI 
Sbjct: 151 ERLAVTVFNGEQGVPWDAEAFELWAQ-QGVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 209

Query: 177 FDQGECIPG-----GLP--GSSEEGERYIEIWNLVFMQFEQQNKQ-ERFILPKMSIDTGM 228
           + QG+ IP      G P  G + + +R++EIWNLVFMQFE++ K      LPK SIDTG 
Sbjct: 210 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 269

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NYD DLF+ ++    ++ G  Y      + RVI DH R+++FLI+D
Sbjct: 270 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 329

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRIMRRA+ +  LLG  +     ++  +   M  AYPEL + +  + 
Sbjct: 330 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 389

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E  R E+E F +TLDRG+ L+D  ++ L +  +  L+G   F L+ T+G P D+ Q IL 
Sbjct: 390 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 449

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG    D+  F + +E  +   +    G G      ++ +L E+ G ++F+        
Sbjct: 450 ERGFDA-DLDGFWKEME--KEADKNKFGGSGEKAISTVYQTLAERLGTSEFL-------- 498

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              +     V+AI++ G  V +A +G+ VE+V D+TPFY E+GG
Sbjct: 499 -------------GYEGEGHEGEGSVRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 545

Query: 527 QLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q GDTG   G G +   Q+TDVQ+   G+ VHH  V+ G  +T   +   +D Q R+ + 
Sbjct: 546 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 605

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV Q GS + PD LRFD +H    T  +L+ +ED VN  + 
Sbjct: 606 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 665

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    TR+M  ++A  SGA A+ G KY + VRVV+V  +     S+ LCGGTHV  +G+
Sbjct: 666 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHPQ-----STELCGGTHVRRSGD 720

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I +G+RRI A+TG  A  +L   + +L+  A  LK S   +  RVE   
Sbjct: 721 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 780

Query: 765 EEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819
           +  ++L+  +     K Q         +  +VN M  +   VD    K  + + D L+ +
Sbjct: 781 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 840

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I+SG++  +G  K+ KA +L+ VT+D++++  +A  L R  AK +GG GG G+  MAQ+G
Sbjct: 841 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEVGGKGG-GKADMAQAG 898

Query: 879 GPNGNKADQAIAGVASFLK 897
           GP+ +K   A+  +    K
Sbjct: 899 GPDASKLPAALDKLYELTK 917


>gi|323705255|ref|ZP_08116830.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535157|gb|EGB24933.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 877

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/908 (40%), Positives = 559/908 (61%), Gaps = 51/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SL+P ND +L+  N+GM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPSRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK  +L + 
Sbjct: 66  CQKCIRT----PDIDRVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T+Y+ D+EAF++W K+ GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVTIYENDDEAFEIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEDK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF++  +     LPK +IDTGMGLER+AT++QE  
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFDKDAEGNYNPLPKPNIDTGMGLERIATIMQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++ G+KY  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITDYVGKMAGVKYGADKKSDVSLRVITDHIRGVTFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  Y +LLG   P +  ++  +      AYPE+ + K  I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAARYGKLLGLDRPFLYDVVDVVVEHYKGAYPEIQERKEYIKKVIKKEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +LDG ++ L      +L G  AFKLYDT+G P+++ ++IL   G++ +D   
Sbjct: 361 ETIDQGLDILDGYINDLKASGKNVLEGSKAFKLYDTYGFPIELTKEILSESGMS-VDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE QR RAR+      +   + I+ ++K+    T+F+GY+  +             
Sbjct: 420 YQKELENQRLRARSSRKEDNALWEKDIYSTMKDI--ETKFVGYEAFKSD----------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V AI++  E+V  A +G++V ++ D TPFYAE+GGQ+GD+G    +
Sbjct: 467 ------------AKVLAIIKDDELVNSAEAGEEVNIILDMTPFYAESGGQVGDSGIIKSE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + + I D +K     FVH   +ERGIL    ++   ID +NR   + NH+ATHLLH AL
Sbjct: 515 DVYINIKDCKKAGGNKFVHIGTIERGILNVGDTVEAIIDEKNRMSTARNHTATHLLHSAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              +G HV Q GS +TPD LRFD TH + +T+ E+K IED VN+ I +++ V   IM+++
Sbjct: 575 RKFIGDHVHQAGSLVTPDRLRFDFTHYQALTAYEIKMIEDEVNEKIYESIGVSIDIMSQD 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +AI  GA AL   KY D VRVV++       +S  LCGGTHV++T +I    I++ES + 
Sbjct: 635 EAIKKGAMALFQEKYGDVVRVVNI-----SDYSKELCGGTHVTNTIQIGAFKIIAESGVA 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           AG+RRIEA+TG  A   L  + E + ++   LKV++ ++V R+ ++ +  + L  QL   
Sbjct: 690 AGVRRIEAVTGLGALEFLNKKGELISNIEQILKVNEKDIVDRIADLSQTIKDLERQLEQL 749

Query: 776 KRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K K+ L++ D    S   I  + F+S  ++++D  ELK + D L+ +++S +I+L  I +
Sbjct: 750 KSKVVLSMSDKLINSAEDINGIKFVSATLNDLDVDELKMMGDILKDRLKSTVIILATI-R 808

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           ++K + + + T+D ++R  N  ++ R   + +  G GGGR  MAQ  G N  K + A+  
Sbjct: 809 DEKINFVGMATKDAIERGINVGNIIREICQ-VADGKGGGRADMAQGVGNNLEKINIALET 867

Query: 892 VAS-FLKK 898
             S F++K
Sbjct: 868 SRSLFIEK 875


>gi|261405443|ref|YP_003241684.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261281906|gb|ACX63877.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 875

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/913 (38%), Positives = 516/913 (56%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K  F G+ KP    +
Sbjct: 1   MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT  K   
Sbjct: 61  ANSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +TVY EDEEA+KLW +  GL  ++II++   DNFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPEKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE      P S      E ER++E+WNLVF QF          LP  +IDTG GLER A+
Sbjct: 174 GEGYDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFAS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ   +N+D DLF+ +IQ + ++ G+KY       +  +VI DH+R+ +F + DG+LP+
Sbjct: 234 ILQNVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPS 293

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RR++RRA+ Y ++LG  +P M  L   +   MG  YPE+++ +  IE+ + +
Sbjct: 294 NEGRGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIAT 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KTL  GL +L  V +   K    +++G+ AFKLYDT+G P D+ +D     GL 
Sbjct: 354 EEEQFHKTLSDGLNILADVSAEAKKQGKSVISGNDAFKLYDTYGFPFDLTEDYASEHGLT 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A++EQR RARA      S   +     L +    ++F+GY+          
Sbjct: 414 -VDREGFDAAMKEQRDRARAARHETESMKVQG--GVLSDYTVKSEFVGYNDTVS------ 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AIV      +    G+  +V+ D TPFYAE+GGQ+ D 
Sbjct: 465 -----------------EAKVLAIVSGDSFADSVSEGETCQVILDVTPFYAESGGQVSDQ 507

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  +R ++  + K   G  VH   VE G L+   ++   +D   R  +  NH+ATH
Sbjct: 508 GMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDSAMRNDIVKNHTATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + P  LRFD +H   IT  EL  IE  VN+ + +++PVV 
Sbjct: 568 LLHKALKEVLGEHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVPVVI 627

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T +I +  ++
Sbjct: 628 ERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIFKLL 682

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            ES I +G+RRIEA+TG+ A  HL GQ + LK  A  LK +  +V  R+E + ++ + L 
Sbjct: 683 GESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVKDLA 742

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   + +L   +         ++ + + ++  +       L+ + D L+ K+   I++
Sbjct: 743 RENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPETILV 802

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L G     K + ++ V ++L+   ++A  L +  A V GGGGG GRP MAQ+GG + +K 
Sbjct: 803 L-GSKAGDKVNFVVAVPQELVKQGYHAGKLVKEVASVCGGGGG-GRPDMAQAGGKDASKL 860

Query: 886 DQAIAGVASFLKK 898
            QA+      + +
Sbjct: 861 AQALQHAEDLVAR 873


>gi|171058684|ref|YP_001791033.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|205830133|sp|B1Y1G9|SYA_LEPCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170776129|gb|ACB34268.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 875

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/913 (40%), Positives = 529/913 (57%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+TFL+FF+  GH+++ SS ++P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKASEIRSTFLKFFESKGHQIVGSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTEHFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+++W K+ G+ A++I+RI  N       DNFW M +TGPCGPC+E
Sbjct: 121 KDKLWVTVYSEDDEAYEIWNKVVGVPAERIVRIGDNKGARYMSDNFWMMGDTGPCGPCTE 180

Query: 175 IFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IFFD       G      E+G+RYIEIWN VFMQF +        LPK S+DTGMGLER+
Sbjct: 181 IFFDHGEGIPGGPPGSPDEDGDRYIEIWNNVFMQFNRTEDGVMHKLPKPSVDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
             VLQ   +NY+IDLF  L+ A++   +  G K       + +VI DH+R+ SF I DG+
Sbjct: 241 TAVLQHVHSNYEIDLFVALLAAAKAAVESAGGKDVDPESPSLKVIADHIRACSFTIVDGV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI RRA+ +   LG   P    ++  L  +MG AYPEL  A+  + E 
Sbjct: 301 IPGNEGRGYVLRRIARRAIRHGYKLGARTPFFHKIVAELVAQMGEAYPELRAAQARVTEV 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L+ E+ERF +T+  G+ +L+  L+  G  + ++G+ AFKL+DT+G P+D+  D+   RG+
Sbjct: 361 LKQEEERFFQTIQHGMEILEHALA--GGTKQVDGETAFKLHDTYGFPVDLTADVCRERGV 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F+ A+E QRS+ARA      +         L      T F GY+ L       
Sbjct: 419 T-VDQAGFDAAMEHQRSQARAAGKFKMAAG-------LAYSGAPTAFHGYEHLV------ 464

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +S V AI   G  V+ A +G    +V D TPFYAE+GGQ GD
Sbjct: 465 ----------------CETSKVVAIYVDGTPVDAAQAGDDAAIVLDHTPFYAESGGQAGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G       R+ + D  K    +F HH  +  G ++   S V  +D + R +   NHSAT
Sbjct: 509 SGELRNGSTRVVVADTFKIQADVFGHHGRIVEGSVKVGDSFVAKVDAELRAKTVRNHSAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  +LG+HV Q GS +  +  RFD  H+ P++ A+++ +E  VN  I  N    
Sbjct: 569 HLMHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVSDAQIRQVEAIVNAEILANAAAS 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++M  +DA  SGA  L G KY + VRV+S+        S  LCGGTHV +TG+I L  +
Sbjct: 629 AQVMALDDAQKSGAMMLFGEKYGETVRVLSIGS------SKELCGGTHVKATGDIGLFKV 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V+ES + AGIRRIEAITG  A ++L   +  +  +AS LK +   V  R+  + ++ R L
Sbjct: 683 VAESGVAAGIRRIEAITGDNALAYLQSLESTVNGVASALKSAVPEVPARISGLQDQVRAL 742

Query: 771 QLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  K KL  +  D    +  D+N    ++ ++   D+  L++ MD L+ K+++  I
Sbjct: 743 EKELAALKGKLASSQGDSLLAQTVDINGLKVLAVVLEGADAATLRTTMDQLKNKLKTAAI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L  +    K  +   VT D   +  A +L    A+ +GG GG G+P MA +GG + +K 
Sbjct: 803 VLAAV-DGGKVQLAAGVTADSTAKVKAGELVNFVAQQVGGKGG-GKPDMAMAGGTDPSKL 860

Query: 886 DQAIAGVASFLKK 898
             A+A V  ++ +
Sbjct: 861 AAALASVPGWVGE 873


>gi|52081222|ref|YP_080013.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786603|ref|YP_092432.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319644810|ref|ZP_07999043.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
 gi|59798507|sp|Q65GS5|SYA_BACLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52004433|gb|AAU24375.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349105|gb|AAU41739.1| AlaS [Bacillus licheniformis ATCC 14580]
 gi|317392619|gb|EFV73413.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2]
          Length = 878

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/915 (38%), Positives = 526/915 (57%), Gaps = 58/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + +R  FL+FF++ GH + PS+SLIP  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKTLTSAQVRQMFLDFFKEKGHAVEPSASLIPHEDPSLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTDQK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL +TV+ ED+EA++LW K  G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPERLSVTVHPEDDEAYELWSKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGEDYGNDPSDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q+   NYD DLF  +I+A+E ++G KY          +V+ DH+R+++F + DG 
Sbjct: 234 MVSVIQDAKTNYDTDLFMPIIKATEAISGEKYGTSAEKDTAFKVVADHIRTAAFAVGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+ YA+ +    P M  L+P +   M + Y E+ +    I + 
Sbjct: 294 LPSNEGRGYVIRRLLRRAVRYAKSININRPFMYELVPVVADIMAAFYGEVKEKADFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL  GL +L  V+       + I++G+  FKLYDT+G P+++ ++     
Sbjct: 354 IKTEEERFHETLHEGLAILSEVIQKEKAKGNRIISGEDVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F + +++QR RAR     +GS   +    +L++    ++FIGY  ++    
Sbjct: 414 GME-VDHEGFEREMDKQRERARQARQDVGSMQVQG--GALRDIMTESEFIGYSDIKT--- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++Q GE+V+    GQKV+ + ++TPFYAE+GGQ+
Sbjct: 468 --------------------ETKIAELLQDGELVDLVQEGQKVQFILEKTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G        +++TDV+K   G  +H  IVE G ++  MS+   +  + R+ +  NH+
Sbjct: 508 GDKGWVKSGDAAIRVTDVKKAPNGQHLHEGIVESGAIKKGMSVTAEVTERLRKDIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS +T   LRFD +H   +T  EL+ IE  VN+ I  ++P
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVTDSRLRFDFSHFGQVTKEELEQIETKVNEKIWASIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VQIDLKPIAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVRNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSES I AG RRIEA+TGQ A   +  + E L+  A  LK +   V  R+E +  + +
Sbjct: 683 KIVSESGIGAGTRRIEAVTGQGAYEEMNAKLELLEQAAEVLKTNVKEVPKRIEALQSDLK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             Q  +     +L  ++         +I  +  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 DAQRENESLLAKLGNKEAGEILEKVKEIDGIKLLAEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L  +  E K ++   VT+DL++R F+A  L +  A+  GGGGG GRP MAQ+GG   
Sbjct: 803 VIVLGAVQNE-KVNISAGVTKDLIERGFHAGKLVKQVAEACGGGGG-GRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            +  +A+A    ++K
Sbjct: 861 ERLAEALASAEEWVK 875


>gi|28198031|ref|NP_778345.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182680658|ref|YP_001828818.1| alanyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130077|sp|Q87F43|SYA_XYLFT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830289|sp|B2I6K2|SYA_XYLF2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28056091|gb|AAO27994.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182630768|gb|ACB91544.1| alanyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307579119|gb|ADN63088.1| alanyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 884

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/910 (40%), Positives = 546/910 (60%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPSNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT+ ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I  G      E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N  +   VI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSLC--VIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLIAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 424 MAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAATLSPTVFLGYEQLQADDLR----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 476 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 I-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +  DG+RL++TD QK       H A + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV Q GS + PD LRFD +H +PI++A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHITRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  NVV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANNVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +         +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|258515483|ref|YP_003191705.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779188|gb|ACV63082.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 878

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/910 (40%), Positives = 540/910 (59%), Gaps = 49/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FL FF K GH ++PS+SLIP NDP++++T +GMVPFK  FTG   P +  V
Sbjct: 1   MTGNEIRDSFLNFFAKRGHYIIPSASLIPANDPSILWTAAGMVPFKPFFTGAATPEHTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T    L 
Sbjct: 61  TTCQKCLRT----PDIDVVGKTARHHTFFEMLGNFSFGDYFKTEAINWAWEFVTVNLGLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+I++Y+ D+EAF++W K   + ADKIIR+  + NFW +   GPCGPCSEI+ D GE
Sbjct: 117 KEKLWISIYENDDEAFEIWHKQVAIPADKIIRLGKDTNFWEIGV-GPCGPCSEIYIDLGE 175

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G    G   + +RY+EIWNLVF+QF +  +     L    IDTGMGLER+A+VLQ+
Sbjct: 176 HRGCGSADCGVGCDCDRYLEIWNLVFIQFFRDEEGNYTPLENKGIDTGMGLERVASVLQD 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DL + ++  + +   + Y  ++   +  +VI DH R+ +F I DG LP+NEGR
Sbjct: 236 VRTNFDTDLLREIMDYTAEQLKVIYGKDDKTDLALKVIADHSRAVTFAIGDGALPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + R LG  E  +  +  A+  +M   Y +L   +  I++ + +E++R
Sbjct: 296 GYVIRRLIRRAVRFGRSLGVDELFLHKVAGAVIHQMSGTYTDLGSNQGHIKKVILNEEKR 355

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL  G  +L+ ++       + +++G  AF+LYDT+G PL++ Q+I   +GL  ID 
Sbjct: 356 FSETLANGTEILNKLIEEAIRAGNAVISGLDAFQLYDTYGFPLELTQEIAGEQGL-LIDE 414

Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            SF QA+E QRSRAR+          T  ++ +++++ G T FIGY+ L+          
Sbjct: 415 DSFVQAMESQRSRARSARQETEYISETGVLYKNIRDERGTTNFIGYNALQ---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V A+V+ G+ V+ A +G ++E+V D TP YAEAGGQ+ D    
Sbjct: 465 -------------AEAKVLALVKDGQNVQSAQAGDEIEIVLDITPCYAEAGGQVTDFAVL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  + + I+ V K  E + VH   VE G+L+   ++ + +  + R  ++ NHSATHLLH
Sbjct: 512 SGQDLNVMISQVIKPVENLIVHKGKVESGLLQVNDTVKIEVAGERRLSIARNHSATHLLH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + PD LRFD TH   +++ EL  IE  VN  I  NLPV     
Sbjct: 572 KALKEVLGEHVNQAGSLVEPDRLRFDFTHYAAVSNEELNKIEKIVNRTILSNLPVTVSES 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GAAAL G KY D VRVV +     G  S  LCGGTH+ ST EI L  ++SES
Sbjct: 632 SLSKAREMGAAALFGEKYGDLVRVVKM-----GEFSLELCGGTHIHSTAEIGLFKLISES 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           SI +G+RR+EA+TG+ A  ++  ++++L  LA  +K S   +V RVE I +  ++L+   
Sbjct: 687 SIGSGLRRVEAVTGEGALHYIETKEQQLLMLAHLVKSSPNELVRRVESIIKSVKELEHES 746

Query: 775 AKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L    VE+L      I ++  ++   S  D   L++++D L+ KIQSGI+ L  
Sbjct: 747 EALKAKLARFEVENLLSQVKMIKNIKVLAAKASAADMDSLRAMVDLLRDKIQSGIVFL-S 805

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +   KA+++  VT+DL     +A  L +  A V+GGGGG GRP MAQ+GG + ++  +A
Sbjct: 806 AANNGKANLVAAVTKDLTSIGLHAGKLIKEVAPVVGGGGG-GRPDMAQAGGKDASRIPEA 864

Query: 889 IAGVASFLKK 898
           I  V + + +
Sbjct: 865 IEKVYTVVAE 874


>gi|121605522|ref|YP_982851.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|205830175|sp|A1VQK2|SYA_POLNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120594491|gb|ABM37930.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 874

 Score =  906 bits (2342), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/907 (41%), Positives = 527/907 (58%), Gaps = 56/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V+ IR TFL+FF   GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   TVADIRKTFLDFFAAKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGVDKRPYVRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL  TVY+ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 ERLLATVYEEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D G+ IPGG PGS  E+G+R+IEIWN VFMQF          LP   +DTGMGLER+A
Sbjct: 187 FYDHGDHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAEDGSVTPLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+ID+F  LI+A+ + TG    G+   + RVI DH+R+++FL++DG+ P+N
Sbjct: 247 AILQHVHSNYEIDIFDALIKAASRETGEADLGHK--SLRVIADHIRATAFLVSDGVNPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +  LLG   P    L+  L   MG AYP L      I E L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYLLGKKTPFFHKLVADLAGLMGDAYPRLAADAQRITEVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL+ G+ +LD  L+     ++L G+VAFKL+DT+G PLD+  D+   RGL+ +D
Sbjct: 365 EERFFETLETGMQILDAALAD--GVKVLPGEVAFKLHDTYGFPLDLSADVCRERGLS-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+ +Q+++ARA           K+  +L        F GY+ L           
Sbjct: 422 EAGFTVAMNQQKAQARAAGK-------FKMDRALDYSGTGNVFTGYEHLE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +S + AI   G       +GQ   +V D TPFYAE+GGQ GD G  
Sbjct: 465 -------------ETSKIIAIYADGVSAAALKAGQNGVIVLDTTPFYAESGGQAGDEGEL 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I    R  ++D  K    ++ HH  +  G L     +   ++ + R     NHSATHL+H
Sbjct: 512 ISGSARFAVSDTLKIKADVYGHHGTLAEGTLNVGDHVSARVNKEVRAATVRNHSATHLMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV Q GS +  +  RFD  H+ P+T A+++ +E  VN  I  N       M
Sbjct: 572 KALREVLGAHVQQKGSLVNAERTRFDFAHNAPMTDAQIREVEARVNAEILANSATDASEM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY D VRV+S+        S  LCGGTHV  TG+I L  IV+ES
Sbjct: 632 DMEAAQKTGAMMLFGEKYGDSVRVLSIGS------SKELCGGTHVGRTGDIGLFKIVAES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RR+EA+TGQ A ++L   +  ++S A  LK S   +  R+ ++ ++ + L+   
Sbjct: 686 GVASGVRRVEAVTGQNALAYLQSLESTVQSAAGTLKASPSELQNRIGQVLDQVKALEKEV 745

Query: 775 A--KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D   L    +  +  ++  +   D+K L+  MD L+ K+++ +I+L  
Sbjct: 746 AALKGKLASSQGDELMLQAVDVKGLKVLAARLEGADAKTLRETMDKLKDKLKTAVIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +    K  +   VT D   +  A +L    A  +GG GG G+  MA +GG + +  + A+
Sbjct: 806 V-DGSKVQIAAGVTSDSTGKVKAGELVNFVAGQVGGKGG-GKADMAMAGGTDASNLNAAL 863

Query: 890 AGVASFL 896
             V  ++
Sbjct: 864 DSVLGWV 870


>gi|146328813|ref|YP_001209206.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|205830079|sp|A5EW88|SYA_DICNV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146232283|gb|ABQ13261.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 873

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/899 (41%), Positives = 532/899 (59%), Gaps = 56/899 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F +NGH+++ S+SL+P NDPTL+FTN+GMVPFK +F G E   Y+  
Sbjct: 4   MTTAEIRRAFLNYFSENGHKIVHSASLVPGNDPTLLFTNAGMVPFKELFIGTETRDYRRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT+   L 
Sbjct: 64  TSAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWRFLTEVLQLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             +L +TVY ED+EA+++W++  GL AD+IIRI           DNFW+M +TGPCGPC+
Sbjct: 124 AEKLLVTVYHEDDEAYRIWQEKIGLPADRIIRIGDKAGKAKYESDNFWAMGDTGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  I GG PGS  E+G+R+IEIWN+VFMQFE+  +     LPK SIDTGMGLER
Sbjct: 184 EIFYDHGAEIFGGRPGSADEDGDRFIEIWNIVFMQFERDAEGTMKPLPKPSIDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A V+Q   +NYDIDLF HLI A+ +  G K EG    + +VI DH+R++ FL+ DG+LP
Sbjct: 244 IAAVMQGVHSNYDIDLFIHLIDAAAKAVGCKNEGQ--ASLKVIADHIRATVFLMVDGVLP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRIMRRA+ +   LG        L+ AL  EMG AYPE+I  +  I ET+R
Sbjct: 302 SNEGRGYVLRRIMRRAIRHGYKLGQQGLFFHKLVAALVAEMGEAYPEIIAEQARITETIR 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ RF +TL  G+ +L+  L+ L K  I++G+  FKLYDT+G P+D+  DI   RGL  
Sbjct: 362 KEELRFAQTLTAGMQILEQDLATL-KGTIISGETVFKLYDTYGFPVDLTNDIARERGLT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   +   ++ QR RA+A     G+   +K +       G T F+ Y            
Sbjct: 420 LDEAGYEALMQAQRERAKAS----GTFRADKTYT----VSGKTAFLAYQ----------- 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S ++AI  Q +  +    G +  +V +Q+PFY E+GGQ+GD+G
Sbjct: 461 ------------QEQTESTIEAIFVQEQAADTLDCGDEAVLVLNQSPFYGESGGQIGDSG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                     ++D QK+ + + +H   ++RG+L    ++   ID   R  +  +HSATHL
Sbjct: 509 VIYHQNGAFLVSDTQKQGD-VLLHFGRLQRGVLSVGDTVCAEIDRARRAAIRRHHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG+HV Q GS +  D LRFD +H   +T+AE+ ++E  +N+ I +N PV   
Sbjct: 568 LHQALRMTLGTHVQQKGSLVDADKLRFDFSHDAALTAAEIGAVEQLINEQILRNQPVNIS 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A A GA AL G KY D VRVV +  +D    S  LCGGTHV  TG++ L+ I++
Sbjct: 628 EMPYDQACAQGAMALFGEKYGDIVRVVKMGADD---FSVELCGGTHVKQTGDLGLVKIIA 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +S++ AGIRR+E + G  A  +   Q+ +L+ +A+ LK    + V ++E + ++ + L+ 
Sbjct: 685 QSAVAAGIRRVECVAGLAALRYCQQQETQLQRIAAVLKSDLEHSVEKIERLQQDTKTLEK 744

Query: 773 --IHAKRKLQLNVEDLSCHKIADVNF---MSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                KR + L     +   + D++    M+    ++D+  L+   D L+ K Q  +++ 
Sbjct: 745 TVQQLKRTVALGGTQETAESVVDIHGWKTMAVRRDDLDNAILRDTADQLRDKYQLDVVV- 803

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +G S  + A +++ V +       A  + +  A  +  G GGGRP  AQ+GG N    D
Sbjct: 804 IGSSDGEMARLVVSVAKSAAA-LKAGAIVQTLAAFI-DGKGGGRPDFAQAGGKNIQGLD 860


>gi|313623696|gb|EFR93847.1| alanyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 879

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/912 (38%), Positives = 514/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDESDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQADFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L +  +  ++ + G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      ++F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNTTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +V+E  SG + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVDEVASGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G+++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|310823694|ref|YP_003956052.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309396766|gb|ADO74225.1| Alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 897

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/919 (41%), Positives = 542/919 (58%), Gaps = 56/919 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF+  GH  + SS L+P NDPTL+FTN+GMV FK++FTG+EK  Y   T
Sbjct: 6   TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L  
Sbjct: 66  TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 125

Query: 123 RRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV++ ++      EAF+LW +  G+  D+I+++   DNFW+M +TGPCGPCSEI 
Sbjct: 126 ERLAVTVFNGEQGVPWDAEAFELWAQ-QGVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 184

Query: 177 FDQGECIPG-----GLP--GSSEEGERYIEIWNLVFMQFEQQNKQ-ERFILPKMSIDTGM 228
           + QG+ IP      G P  G + + +R++EIWNLVFMQFE++ K      LPK SIDTG 
Sbjct: 185 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NYD DLF+ ++    ++ G  Y      + RVI DH R+++FLI+D
Sbjct: 245 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 304

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRIMRRA+ +  LLG  +     ++  +   M  AYPEL + +  + 
Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 364

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E  R E+E F +TLDRG+ L+D  ++ L +  +  L+G   F L+ T+G P D+ Q IL 
Sbjct: 365 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 424

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG    D+  F + +E  +   +    G G      ++ +L E+ G ++F+        
Sbjct: 425 ERGFDA-DLDGFWKEME--KEADKNKFGGSGEKAISTVYQTLAERLGTSEFL-------- 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              +     V+AI++ G  V +A +G+ VE+V D+TPFY E+GG
Sbjct: 474 -------------GYEGEGHEGEGSVRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 520

Query: 527 QLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q GDTG   G G +   Q+TDVQ+   G+ VHH  V+ G  +T   +   +D Q R+ + 
Sbjct: 521 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 580

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV Q GS + PD LRFD +H    T  +L+ +ED VN  + 
Sbjct: 581 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 640

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N    TR+M  ++A  SGA A+ G KY + VRVV+V  +     S+ LCGGTHV  +G+
Sbjct: 641 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHPQ-----STELCGGTHVRRSGD 695

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I+SE  I +G+RRI A+TG  A  +L   + +L+  A  LK S   +  RVE   
Sbjct: 696 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 755

Query: 765 EEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819
           +  ++L+  +     K Q         +  +VN M  +   VD    K  + + D L+ +
Sbjct: 756 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 815

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I+SG++  +G  K+ KA +L+ VT+D++++  +A  L R  AK +GG GG G+  MAQ+G
Sbjct: 816 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEVGGKGG-GKADMAQAG 873

Query: 879 GPNGNKADQAIAGVASFLK 897
           GP+ +K   A+  +    K
Sbjct: 874 GPDASKLPAALDKLYELTK 892


>gi|157364647|ref|YP_001471414.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|205830273|sp|A8F866|SYA_THELT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157315251|gb|ABV34350.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 858

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/905 (41%), Positives = 549/905 (60%), Gaps = 56/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R+ FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 1   MTGDELRSAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L+
Sbjct: 60  TTCQKCLRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKKEAIIWAWEFVTEVLKLE 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + RL+ITVY+EDEE+FK+WK I G+   KIIR+  + NFW     TGPCGPCSEI +D G
Sbjct: 116 KDRLWITVYEEDEESFKIWKDIVGVCEKKIIRMGKDTNFWGPAGPTGPCGPCSEIHYDTG 175

Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             E    G    +   +R++EIWNLVF +F Q  K   + LP+ +IDTG GLER+A+V+Q
Sbjct: 176 LNEDCSDGECTPANSDKRFLEIWNLVFTEFYQDEKGALYPLPRKNIDTGAGLERVASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +  +N++ D+FK +I   E V G++Y+ +    ++ RVI DH R+ SFLIADG+ P+NE 
Sbjct: 236 KVESNFETDIFKPIISKIEDVLGVEYKKDEQKDISIRVIADHSRAVSFLIADGVFPSNEE 295

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ +  LLG  +P +  +   +   MG+ Y EL   K LI E  R+E+E
Sbjct: 296 RGYVLRRILRRAVRHGVLLGAQKPFLHLINETVIEHMGNTYSELKNRKDLILEVTRAEEE 355

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF KT+ +G  +L  ++S     ++++G+  FKLYDT+G P DI+ D+     L  +D+ 
Sbjct: 356 RFFKTISQGNEMLRDIIS--RSSKVIDGEDVFKLYDTYGFPPDIVVDVAKDYNLK-VDLE 412

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + ++ QR RAR+    +    +++I+  L +K   T F+GYD L             
Sbjct: 413 GFEKLMKIQRERARSARNNVEYAKSQEIYDELAQK-SKTVFVGYDTLE------------ 459

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                                + +++    SG K E VFD+T FYAE GGQ+ D G  + 
Sbjct: 460 --------------------CEAKVIFLKKSGTKYEAVFDKTSFYAERGGQVSDVGQIVW 499

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG    +  V    EGI VH   VE+G L+    + L +D + R   + NH+ATHLLH A
Sbjct: 500 DGGSASVEHVFIPVEGIIVHIINVEKGELKEGTKVRLIVDREKRLSTARNHTATHLLHAA 559

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q GS +TP+ LRFD TH KP+T  EL SIE+ VN+II +++PV+T   + 
Sbjct: 560 LRKVLGTHVKQAGSLVTPEKLRFDFTHHKPLTDNELMSIENMVNEIILRSIPVITEEKSY 619

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A+A GA AL G KY D VRVV V        S  LCGGTHV +TG I L  IVSES+I
Sbjct: 620 KEAVAEGAIALFGEKYGDVVRVVKVHS-----FSEELCGGTHVKNTGNIGLFRIVSESAI 674

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RRIEAITG    ++L  +++ + ++   L  SQ  ++ ++E + E+   LQ    +
Sbjct: 675 SSGTRRIEAITGFNTLNYLRVKEQLVGNICEKLGTSQDEILSKIENLIEKNINLQKELQQ 734

Query: 777 RKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            K +L V  L      +I ++ F+  + ++++S EL+++ D       S + +L   SK+
Sbjct: 735 FKSKLLVSQLKQTPFEQIKNIRFVHCVFNDIESNELRNLSDIAVAGENSTVALLFSTSKD 794

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K ++++ VT+DL  +  A D+A+ +A++L GG GGGRP  AQ+GG + +K +  I    
Sbjct: 795 -KVNLIVRVTQDLAKKIKAGDIAKYAAQILEGG-GGGRPDFAQAGGKDPSKINSVIEYTR 852

Query: 894 SFLKK 898
             L++
Sbjct: 853 KLLEQ 857


>gi|116623844|ref|YP_826000.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|122253309|sp|Q01XA0|SYA_SOLUE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116227006|gb|ABJ85715.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 878

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/909 (39%), Positives = 525/909 (57%), Gaps = 47/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF + GH ++ SSSL+P NDPTL+FTN+GM  FK++F GQEK  Y   
Sbjct: 1   MTGHEIRQRFLDFFAERGHRVVRSSSLVPANDPTLLFTNAGMNQFKDVFLGQEKRDYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AWDL+TK++ L 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKADAIAYAWDLITKDYGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+TV+ ED+EA +LW+K++G+   +I R+   DNFW M ETGPCGPCSEI +D G 
Sbjct: 121 KEKLYVTVFREDDEAEELWQKVTGIPKSRIFRLDEKDNFWQMGETGPCGPCSEIHYDLGI 180

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
              E          + G R++EIWNLVFMQ+++    +   LP+ SIDTGMGLER+A +L
Sbjct: 181 EAAEPGREHEQFPDDAGGRFVEIWNLVFMQYDRDQSGKLNPLPRPSIDTGMGLERIAAIL 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANE 295
           Q K  NYD DL   +I+ + ++ G+    +   +   R++ DH R++ FLI DG++P+NE
Sbjct: 241 QGKITNYDTDLIYPIIEHAAEIFGVTPGADTRTDTVLRIVADHARATEFLIHDGVVPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLR+IMRRA+   R++G  +P +  L   +   M   YPEL+++   +    + E+
Sbjct: 301 GRGYVLRKIMRRALRNVRMIGIEDPFLYKLTGFVGELMKGPYPELLESIQRVARVTKDEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            R+  T      + +  +  + +   + G ++FKLYDT+GL LD  +D+    GLA ID 
Sbjct: 361 HRYATTFLVAERVFNDAIKSI-QGNTIPGALSFKLYDTYGLALDEQEDMAREHGLA-IDR 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            SF+  +E+QR RARA   G         +  L E+ G T+F+GY  L            
Sbjct: 419 ESFDTEMEQQRERARASWKGAEKAAVTPAYQKLVEQ-GRTKFLGYSELE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +S V  ++   E V++  +G K E+V DQTPFYAE+GGQ+GD G   
Sbjct: 467 ------------AASRVVGLIVDKESVQQVPAGAKAELVLDQTPFYAESGGQVGDHGILY 514

Query: 536 GDGIRLQITDVQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++ DV+    G+     H I     +    +L   +    R     NH+ATHLL
Sbjct: 515 SAAGE-KVADVETAFPGVPGLTVHRIAALAPIAVGDTLRAEVAVPLRDATRRNHTATHLL 573

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H +L T+LG HV Q GS + P  LRFD TH   +  AEL+ +E  +N  I +N  V T I
Sbjct: 574 HASLRTVLGKHVKQAGSIVDPGRLRFDFTHYAGLDHAELEEVERLMNQEILRNTAVQTDI 633

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  E AIA+GA AL G KY D+VRVVSV        S  LCGGTHV  TG+I +  IV E
Sbjct: 634 LPLEQAIATGAMALFGEKYGDQVRVVSVPG-----FSRELCGGTHVQRTGDIGVAKIVYE 688

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            SI AG+RRIEAITG+ A          +K +A  +KVS+  ++  +E++    R L+  
Sbjct: 689 GSISAGVRRIEAITGEAALRQYQETSGAVKRVADMVKVSEPALIEHIEKMIANERALEKQ 748

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K +L        D     I  V  ++  +  +D  +++++ D+L+ K +S +++L 
Sbjct: 749 VEQLKNKLAQAAVGSLDAEARTIKGVKVVAAHLDGMDRAQMRALADSLRNKWKSAVVVLA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            + ++   +++  VT+DL  + +A  LA   A+ + GG GGGRP MA++GG + +  D+A
Sbjct: 809 SV-EDGNVAIISAVTKDLTAKVHAGKLASSLAQAV-GGKGGGRPDMAEAGGKDPSCLDEA 866

Query: 889 IAGVASFLK 897
           +  V + ++
Sbjct: 867 LTAVYADVE 875


>gi|313637763|gb|EFS03118.1| alanyl-tRNA synthetase [Listeria seeligeri FSL S4-171]
          Length = 879

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 515/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  +W++  GL+ + I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTAFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L +  K  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  I+Q   +V+E  +G   +++F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYIIQNDALVDEVAAGXXAQLIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H  +V+ G+L T  ++ L++D   RR+   NH+ATHL
Sbjct: 512 TIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVDKVKRRETVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQIAVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK S      ++E +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTSTKETPQKIELLQADLREVRR 746

Query: 773 IHAKR--KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     KL             +I  VN ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 SALDYVSTWVKE 876


>gi|304407565|ref|ZP_07389217.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304343516|gb|EFM09358.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 877

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/910 (39%), Positives = 521/910 (57%), Gaps = 55/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+  GH + PS+SL+P NDP+L++ N+GM P K  F G+  P    +
Sbjct: 1   MKASEIRSKWLAFFESKGHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
           T  QKC+R     ND++NVG+T RHHTFFEMLGNFS G YFKE  I  AW+ LT      
Sbjct: 61  TNSQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKQWIG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  RL +TVY ED EAF+ W K  GL  ++I ++  ++NFW + E GPCGPC+EIF+D+
Sbjct: 117 FDPSRLSVTVYPEDTEAFEFWNKKIGLPEERIYKL--DENFWDIGE-GPCGPCTEIFYDR 173

Query: 180 GECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           G+              E ER++E+WNLVF QF          LP  +IDTG GLER A++
Sbjct: 174 GDKYGDLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 233

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  +N+D DLF+ +I  + ++  + Y    ++ +  +VI DH+R+ +F + DG+LP+N
Sbjct: 234 LQDVDSNFDTDLFRPMIDRTCEIANVSYHVNADHDLALKVIADHIRTVAFAVGDGVLPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+ Y + LG   P +  L   +   MG  YPE+++ +  IE  +R+E
Sbjct: 294 EGRGYVIRRLLRRAVRYGKSLGIDRPFLFELTKVVGDVMGMYYPEVVEKREFIERVIRTE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL LL  ++S + +     ++G+ AF+LYDT+G P D+ +D     GL  
Sbjct: 354 EERFHETLSDGLTLLGALVSQVREAGKNEISGEDAFRLYDTYGFPFDLTEDYASENGLT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F+ A+E QR RARA     G    +     L E    ++F+GY  L         
Sbjct: 413 VDRAGFDSAMEAQRERARAARQETGGMNVQG--GPLSELTEKSEFVGYSEL--------- 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S + AIV +  +V+ A  G +V V+ D+TPFYAE+GGQ+GD G
Sbjct: 462 --------------TTNSKITAIVHEDSLVDIAGEGSRVLVLLDRTPFYAESGGQIGDRG 507

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GDG  L + DV K  +G  VHHAIV  G +R   S   ++    R  +  NH+ATHL
Sbjct: 508 VIQGDGFVLNVEDVTKAPQGQPVHHAIVASGTVRVGESAQASVARDLREDIVKNHTATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  D LRFD +H   IT  EL  IE  VN+ I    PVV  
Sbjct: 568 LHKALKEVLGEHVNQAGSLVKSDSLRFDFSHFGAITEEELADIERRVNEQIWIGTPVVIE 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +A A GA AL G KY D VRVV V     G +S  LCGG HV++T +I    ++ 
Sbjct: 628 SKAIAEAKAMGAMALFGEKYGDVVRVVQV-----GGYSIELCGGCHVANTSQIGTFKLIG 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           ES I +G+RRIEA+TG+ A +++  Q + LK  A  LK +  +V  R+E ++ + ++L  
Sbjct: 683 ESGIGSGVRRIEAVTGRHAYAYMEAQFDLLKQAAGLLKSNTADVPKRIEALFGQVKELGR 742

Query: 771 --QLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             + + AK  +++          + DV  ++  +S      L+ ++D L+ K+ S II+L
Sbjct: 743 DNESLQAKLSRIEAGSLTDQAKTVGDVTILTAAVSAPSMDALRGIVDELKAKLPSAIIVL 802

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G +++ K +++  V+ D + + FNA  L + +A V GGGGG GRP MAQ+GG + +K  
Sbjct: 803 -GAAQDDKVNLVASVSPDFVKKGFNAGKLVKEAAAVCGGGGG-GRPDMAQAGGKDASKLA 860

Query: 887 QAIAGVASFL 896
            A+      +
Sbjct: 861 DALKLAEELV 870


>gi|237755762|ref|ZP_04584366.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692072|gb|EEP61076.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 876

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/902 (40%), Positives = 542/902 (60%), Gaps = 41/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL++F+  GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+  Y+  
Sbjct: 4   MTADEIRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK  R  GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   + 
Sbjct: 64  ASCQKVFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLKIP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L ++V++ED+EAF++W K  GL   KI R+   DNFWSM +TGPCGP SEI++D+GE
Sbjct: 124 KEKLLVSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGE 183

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                  G +E+  RY+EIWNLVFMQ+ +  K     LP  SIDTGMGLER+A+VLQ   
Sbjct: 184 KFGSPEFG-AEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVD 242

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +NYD DLFK +IQ +E+V+G +Y  N  + +  RVI DHLR+ +FLI+DG+LPANEGRGY
Sbjct: 243 SNYDTDLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ Y + L   +P +   +  +  +M +AYPELIQ +  I+   +SE+E+F 
Sbjct: 303 VLRRIIRRALRYGKNLSIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFI 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTL R + +L  ++    K+    L G+ AFKLYDT+G P+D+M++IL   G    D+I 
Sbjct: 363 KTLKRSMDILYQMIEQARKENRRHLTGEEAFKLYDTYGFPIDLMEEILKDEGFT-FDLIE 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+  LEEQ+ RAR       S   + ++ +LK K    QF+GY+ L              
Sbjct: 422 FHNLLEEQKERARKSWK-SQSKEIKPVYLTLKNKLPENQFVGYETL-------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S V AI++  ++V+ A  G+ VE+V D TPFY E GGQ+GD G   GD
Sbjct: 467 --------TSENSKVLAIIKGDQLVDTAKEGEDVEIVLDITPFYPEKGGQVGDRGIIEGD 518

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D Q   +G+ VH   V  G ++    +   +D + R  +  +H+ATHLLH AL
Sbjct: 519 EFLFEVLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKVDKERRENIMRHHTATHLLHAAL 578

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++ + LRFD TH + +T  ELK++E+ VN  I +N  VV + M  E
Sbjct: 579 RNVLGDHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYE 638

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+ SGA A+   KY D VRV+S         S  LCGGTHV  TG+I    I+SES++ 
Sbjct: 639 EALKSGAMAIFEEKYADVVRVISAGI------SKELCGGTHVKRTGDIGYFKILSESAVS 692

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775
           +G RRIEA+ G +A    + +   +K L+  L   +  ++ RV ++  + ++   ++ + 
Sbjct: 693 SGTRRIEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENL 752

Query: 776 KRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++KL L+   E+L+  +          +  ++  EL+ + D L++K+   +I++     E
Sbjct: 753 RKKLALSNINENLNIIEKEGFKVAYVSVENLNPNELREIADHLRQKLGKSVILVASKDAE 812

Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K K + ++ V+++L + + A D+ +  A  +GG GG GRP  AQ G  + +K  Q     
Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASAVGGSGG-GRPDFAQGGINDTSKLSQLFEEF 871

Query: 893 AS 894
             
Sbjct: 872 KK 873


>gi|208779166|ref|ZP_03246512.1| alanyl-tRNA synthetase [Francisella novicida FTG]
 gi|208744966|gb|EDZ91264.1| alanyl-tRNA synthetase [Francisella novicida FTG]
          Length = 865

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/900 (42%), Positives = 532/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|254372737|ref|ZP_04988226.1| hypothetical protein FTCG_00305 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570464|gb|EDN36118.1| hypothetical protein FTCG_00305 [Francisella novicida GA99-3549]
          Length = 865

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/900 (42%), Positives = 532/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGDHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|157826336|ref|YP_001494056.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|205830190|sp|A8GQ73|SYA_RICAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157800294|gb|ABV75548.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 878

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/901 (46%), Positives = 567/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKTNNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQTKRPYHTAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASCWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ  +
Sbjct: 185 IYGGLPGTKYEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVS 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MGS YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGSQEPLMYKLLPKLVDLMGSVYPELKRAESFISRILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G++AFKLYDT+G PLD+ +DIL  R ++ ID   F + 
Sbjct: 365 LERGLKLLTEETETLKKGNELSGEIAFKLYDTYGFPLDLTEDILKNRDIS-IDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLAQKERARKAWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKKIDTQFLLISNQTPFYGESGGQMGDIGTIFAKDSD 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I  H  I+++G +    S   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 IEVIDTLKYLGSIIAHKCILKKGQINVGDSANFSIDIKYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T  E+ SIED VN+II  N  V T +M  EDA+
Sbjct: 581 LGQHVTQKGSLVAPTYLRFDISHSKAVTHEEITSIEDKVNEIIRDNHEVNTTLMTTEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             G  AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGVMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGSFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---R 777
           RRIEA+ G+     +  +D  LKS+ + LK ++  +V +V    E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLIREKDSLLKSIENSLKTNKNELVTKVNNTLERNKELEKELEKTHLA 755

Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +L L++E +      I  V  +   I  +D+K L+     L  K++  I++ +  + + K
Sbjct: 756 RLDLSIEQIEKQAEDIKGVKLIYRHIENLDNKVLRQAAANLTNKVEDLIVVYITGNND-K 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + SF
Sbjct: 815 LSITVAVSKAITDKYNACIIAKELSLFLGGSGGGGQASLAQAGGSDIGKLTNIHEKLYSF 874

Query: 896 L 896
           +
Sbjct: 875 I 875


>gi|258511993|ref|YP_003185427.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478719|gb|ACV59038.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 879

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 530/912 (58%), Gaps = 54/912 (5%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +++   IR  F +FF + GH +LPS  L+P +DPTL++ N+GM P K  F G+E P  
Sbjct: 1   MKSLTGQEIRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEV 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   QKC+R     ND++ VG T RH TFFEMLGNFSFG YFK  AI  AW+ LT+  
Sbjct: 61  PRIVDAQKCIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +LD  R+ +T++++D+EAF++W    GL A +I R    DNFW + E GPCGPCSEIF+D
Sbjct: 117 ELDPERISVTIHEDDDEAFEVWHHRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYD 174

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++EIWNLVF QF +        LPK +IDTG GLER+A++
Sbjct: 175 RGEAYGCGSPDCKPGCDCDRFLEIWNLVFTQFNKNADGSYSPLPKKNIDTGSGLERLASI 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+  NN++ DLF+ +I  + +++G  Y     + V+ ++I DH+R+ +F I DG+LP+N
Sbjct: 235 LQDVPNNFETDLFRPIINRAAELSGRPYGRSAEDDVHLKIIADHVRTVTFAIGDGVLPSN 294

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV+RR++RRA+   R LG   P +  L+  +   MG  YPE+ + + LIE  +R+E
Sbjct: 295 EGRGYVIRRLLRRAVRSGRKLGVERPFLYELVAVVDRIMGDDYPEVREKRSLIERVVRTE 354

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  G  LL+  +  +    + +L+G+ AF+LYDT+G P+D+  +I   +G+A 
Sbjct: 355 EERFLQTLAAGEELLNRTIEEVKARGETVLSGEAAFRLYDTYGFPIDLTVEIAREKGIA- 413

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + LEEQR+RAR          +++   +L+     ++F+GYD L         
Sbjct: 414 VDREGFERELEEQRARAREARQVAEGMQSQR--GALETFTEPSRFVGYDEL--------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V + +  + Q G+ V+    G++ +V+ D TPFYAE+GGQ+GD G
Sbjct: 463 --------------TVDATIIGLFQDGDRVDGLAIGEEGQVILDVTPFYAESGGQVGDRG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G   + ++ DVQK   G  V    V  G L    S+   +D   RR +  NH+ATHL
Sbjct: 509 EIVGANGKAEVLDVQKAPHGQHVMRVRVVDGSLLQGDSVRAHVDEDFRRDIVKNHTATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS + P+ LRFD +H  P+T  EL  +E  VND I ++  V  R
Sbjct: 569 LHKALRDVLGTHVAQAGSLVEPERLRFDFSHFGPLTDEELAEVERRVNDEIWRDHAVHIR 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A A GA AL G KY  RVRVV          S  LCGG HV  T  I    I S
Sbjct: 629 EMDLDEAKAMGAMALFGEKYGQRVRVVQAG------ESIELCGGCHVPRTSVIGQFLITS 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G RRIEA+TG+ A      ++E+L+ +A  LK +   VV R + + +E R+L+ 
Sbjct: 683 ETGIASGTRRIEAVTGRYAYRVAREREERLRQVADALKTNVSTVVERAQRVVQEMRELER 742

Query: 773 IHAKRKLQLN---VEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L    V++L      +A V  +   +S++D   L+ ++D ++ ++ S ++++
Sbjct: 743 ELESAKARLAHARVDELVANVETVAGVPVIRAALSDLDMDGLRQLVDEIKARVDS-VVVV 801

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +G +   K   +  V++D   R  +A ++ +  A V GGGGG GRP +AQ+GG +  K  
Sbjct: 802 LGSAHRGKVQFVAYVSKDWQSRGLHAGEIVKQVAAVTGGGGG-GRPDLAQAGGRDAAKLA 860

Query: 887 QAIAGVASFLKK 898
           +AI  V   L++
Sbjct: 861 EAIQKVGEILEQ 872


>gi|51893138|ref|YP_075829.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|59798515|sp|Q67MV8|SYA_SYMTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51856827|dbj|BAD40985.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 872

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/905 (40%), Positives = 526/905 (58%), Gaps = 49/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  F++FF+  GH  +PSSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 1   MTSAEIRQKFIDFFKSKGHVHVPSSSLVPHNDPTLLFTNAGMNQFKDTFLGLEKREYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T QKCVRAGGKHNDLD VG T RHHTFFEMLGNFSFG YFKE A+  AW+ +T  +   
Sbjct: 61  VTAQKCVRAGGKHNDLDEVGFTARHHTFFEMLGNFSFGDYFKEDALAYAWEFITSPEWLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RL++++Y +DE+AF +W    G+ AD+I+R+   DNFW M +TGPCGPCSEIF+D 
Sbjct: 121 LPKDRLWVSIYKDDEQAFDVWHNKVGVPADRIVRLGEKDNFWRMGDTGPCGPCSEIFWDM 180

Query: 180 GECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P      +   +R+ E WN VFMQ+ Q  +     L +  +DTG+GLERMAT
Sbjct: 181 GPEYACDHPDGCRIDTCGCDRWREFWNNVFMQYNQTPEG-LVPLERTGVDTGLGLERMAT 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           ++Q   +N+DIDL++ +     +++G KYEG     V  RVI DH R  +FLIADG+  +
Sbjct: 240 IMQGVWSNWDIDLWQPIFARIHELSGKKYEGEGPEAVAFRVIADHARCCTFLIADGVRFS 299

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV+RRI+RRA+ + R+LG+ EP +  +  A+   MG AYPE+ +   +I++ LR 
Sbjct: 300 NEGRGYVMRRILRRAVRFGRVLGFAEPFIWKVAGAVADVMGDAYPEVRERLPVIQDELRR 359

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL++G+  L+ +L+ +    + +++G  AF LYDT+G PLDI++D+   +G  
Sbjct: 360 EEERFLRTLEQGMNRLEEILARMRQKGETVISGQDAFVLYDTYGFPLDIVRDVAREQGFT 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+RARA          +       E    T+F+GY  L G      
Sbjct: 420 -VDEQGYQAAMAEQRARARAARDVSYITEVQSRIAGHLEGVAPTRFVGYTELAG------ 472

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+  Q      A  G  V +V D+TPFYAE GGQ+GDT
Sbjct: 473 -----------------EGRVLAVFDQEGNATGAGEGSSVIIVLDRTPFYAEGGGQVGDT 515

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +  G+R+++ D +K   G  +H+  V+ G L     +   +D + R+    NH+ATH
Sbjct: 516 GQIVAPGLRVEVEDCRKLPSGHHLHYGTVQEGFLEVGQQVEARVDARKRKDTQKNHTATH 575

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV Q GS + PD LRFD TH+ P+T  ++ ++E+ +N  I    PV  
Sbjct: 576 LLHKALREVLGTHVQQAGSLVAPDRLRFDFTHTGPMTPEQIAAVEEMINAEIEAAEPVTW 635

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M  ++A A GA AL G KY + VRVVSV    G   S  LCGG HVS+T E+    I+
Sbjct: 636 TEMPLDEARALGAMALFGEKYGEIVRVVSV----GDGWSRELCGGCHVSNTSEVQYFKIL 691

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I  G+RRIEA+TG     HL     +           Q  +  R++E+ +E  +L+
Sbjct: 692 SESGIGGGVRRIEAVTGPGVIRHLEEAQARAVEA-------QEQLRSRMKEMEKELEQLR 744

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              A  +    VE     ++  V  ++        ++L+++ DA++ K+ SG+++L  ++
Sbjct: 745 AKLAASQTDSLVE--RAQEVGGVKVVAGTAPVATMEDLRNMTDAIRAKLGSGVVVLGAVT 802

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E K +++  VT+DL  R +A +L R  A++ GGGGG GRP MA +GG N  +  +A+  
Sbjct: 803 SEGKVNLVAAVTKDLAGRVHAGNLIREVARICGGGGG-GRPDMATAGGKNPERLGEALNA 861

Query: 892 VASFL 896
           V   +
Sbjct: 862 VPGLV 866


>gi|16800607|ref|NP_470875.1| alanyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|20532255|sp|Q92BK9|SYA_LISIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16414012|emb|CAC96770.1| alanyl-tRNA synthetase [Listeria innocua Clip11262]
          Length = 879

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/912 (37%), Positives = 514/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSEDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDESDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L +  +  ++ + G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      ++F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNTTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +V+E  SG + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVDEVASGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + V+  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVIIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY + VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQADLREVRR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   G+++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|289434784|ref|YP_003464656.1| hypothetical protein lse_1419 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171028|emb|CBH27570.1| alaS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 879

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/912 (37%), Positives = 516/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  +W++  GL+ + I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L +  K  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEY------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  I+Q   +V+E  +G + +++F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYIIQNDALVDEVAAGSEAQLIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H  +V+ G+L T  ++ L+++   RR+   NH+ATHL
Sbjct: 512 TIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVNKVKRRETVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN  I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNKKIWEQIAVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      ++E +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTTTKETPQKIELLQADLREVRR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  VN ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 SALDYVSTWVKE 876


>gi|254374194|ref|ZP_04989676.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151571914|gb|EDN37568.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 865

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +G   +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGFK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQFKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  +    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRYTFTSENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|313672790|ref|YP_004050901.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939546|gb|ADR18738.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 873

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/905 (42%), Positives = 555/905 (61%), Gaps = 43/905 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL++F+K+GH+++ SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 1   MISGKDIREKFLKYFEKHGHKIVDSSSLVPQNDPTLLFTNAGMNQFKDLFLGLEKREYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE  L
Sbjct: 61  ATTCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKELGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y +DEEAF++W K+ G+ A+KI+R    DNFWSM +TGPCGPCSEI  DQG
Sbjct: 121 PEEKLFVSIYYDDEEAFEIWNKVIGIPAEKILRRGEKDNFWSMGDTGPCGPCSEIHIDQG 180

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                  P  +   + +R++E+WNLVFMQ+++    +   LPK SIDTGMGLER+  V Q
Sbjct: 181 PEAGCRKPDCNPDCDCDRHLELWNLVFMQYDRSADGKLTPLPKPSIDTGMGLERITAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K +NYD DL K +I+ + ++ G  Y  N  + V+ RVI DH RS++FLIADG++P+NEG
Sbjct: 241 GKLSNYDTDLIKPIIEFTAKLAGKNYGNNEKDDVSLRVIADHSRSTTFLIADGVIPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM + ++LG+       +   +   MG  Y EL   K  I + +  E++
Sbjct: 301 RGYVLRRIMRRAMRHGKMLGFDGTFFYKVCEFVVDFMGDHYIELKDKKDYISKMVAFEEK 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TLD GL L+D +L      + ++G   FKLYDT+G P+D++QDI    G   +D++
Sbjct: 361 RFSRTLDLGLKLIDELLEKNKDRKEISGSEIFKLYDTYGFPIDLLQDIAEDNGYK-LDLM 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++ +  Q+ RA+ H +G G     +++  L   +  T+F GYD               
Sbjct: 420 GFDKEMALQQERAKKHWVGSGEEKIAEVYKKL--SHLKTEFQGYD--------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    + +SS + A+++ GE  +E   G++V+++ +QTPFY E GGQ GDTG    
Sbjct: 463 --------NHSLSSKILALIENGEEKQEVQEGKEVDILLEQTPFYPEGGGQQGDTGTIYS 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ D  KK   + VH AIV++G L+   ++   ID   R     NH++THLLH A
Sbjct: 515 REAIAEVKDT-KKYGNLIVHKAIVKKGTLKVGENVTAEIDSVKRIATERNHTSTHLLHKA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +  + LRFD +H + I+  ++  IE  VN II +NL V   +M  
Sbjct: 574 LQMVLGDHVRQAGSLVNDEKLRFDFSHFEAISKDDIIEIERIVNSIIIKNLSVTKTLMPI 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A+ SGA AL G KY+  VRVV V        S  LCGG HV +TGEI    I+ E S+
Sbjct: 634 EEAVKSGAMALFGEKYDRIVRVVEV-----SDFSKELCGGCHVRNTGEIGFFRIIGEMSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---I 773
            AG+RRIEA+TG +A    +     L  +   +KVSQ  +V RV+++ EE + ++     
Sbjct: 689 AAGVRRIEAVTGMKAFDEYVKMKNILDDIMLTIKVSQDQIVSRVKDLLEENKAIKKDLDD 748

Query: 774 HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              R+L   +EDL    + I  V  +S  IS  D  +++ + D ++ KI+SGI+++  I+
Sbjct: 749 QKSRELMKMMEDLDRYTYDINGVKLISIKISYPDINKVRELADNIKDKIKSGIVLIAAIN 808

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            + K ++L  +T DL DRF+A  + +   K+ GGGGG GR   AQ+GG + +K D+A+  
Sbjct: 809 ND-KLTILCGITRDLTDRFSADKIVKEITKITGGGGG-GRSDFAQAGGKDISKLDEALTK 866

Query: 892 VASFL 896
           + SFL
Sbjct: 867 IKSFL 871


>gi|299822850|ref|ZP_07054736.1| alanine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816379|gb|EFI83617.1| alanine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 876

 Score =  902 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/913 (38%), Positives = 514/913 (56%), Gaps = 57/913 (6%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +S   +R  FL+FF++ GH + PS+SL+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSQEVRQMFLDFFKEKGHTIEPSASLVPANDPTLLWINSGVATMKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             ++  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRLSNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIVWAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +LY+TVY ED+EA  +WK+  GL+   I+ I   DNFW +   GP GP SEIF
Sbjct: 117 WIGFDPEKLYVTVYPEDKEAKAIWKEKVGLADAHIVEI--EDNFWDIGV-GPSGPDSEIF 173

Query: 177 FDQGECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDPDDPELYPGGENERYLEIWNLVFSQFNHNPDGSYTPLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
           M +++Q+   N++ DLF   I+ +E++  ++Y       V  +VI DH+R+ +F I DG 
Sbjct: 234 MVSIIQDAPTNFETDLFMPTIKETEKLANVRYGNSSETDVAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+L+G  EP M  L+P + + M S YPE+ + +  I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKLIGINEPFMYRLVPVVGSIMKSYYPEVSKQESFIQKI 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +RSE+ERF +TL+ GL +L+ +L          ++G   FKLYDT+G P+++ ++     
Sbjct: 354 IRSEEERFHETLNEGLAILETILKEAKASGEATISGSAIFKLYDTYGFPVELTEEYAEDH 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F   +++QR RAR     + S   +     L      + FIGY+       
Sbjct: 414 GLA-VDHEGFEAEMKQQRERAREARADVKSMQVQGEL--LATLTEPSAFIGYENTESR-- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  ++Q   +V+E  +G++ +V+F +TPFYAE+GGQ+
Sbjct: 469 ---------------------SQIVYLIQNDTLVDEVKAGEEAQVIFRETPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G          + DVQK      +H   VE G+L++   + L +D   R+    NH+
Sbjct: 508 ADHGTIQSTSGLAYVKDVQKAPNKQNLHRIFVEEGVLKSGEEVDLRVDTYKRKSTVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG HV+Q GS + P+ LRFD +H   I+ AEL  +E  VN+ I + +P
Sbjct: 568 ATHLLHRALKNVLGEHVNQAGSLVEPERLRFDFSHFSQISEAELAEMEAAVNEKIWEQIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV   M  ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VVIEEMPIDEAKALGAMALFGEKYGDIVRVVQV-----GRYSIELCGGVHVKNTSEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +V+++  E +
Sbjct: 683 KIISESGIGAGTRRIEAVTGEAAYRFVTEQETTLKETAAKLKTNSSEAPQKVDQLLAELK 742

Query: 769 KLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +++  +     +L   + +       ++  V  ++  ++  D  +L+  +D  + K   G
Sbjct: 743 EVKRENDSLLAKLANTESAAIFEQPEEVNGVPVIAKKVNAKDMNQLRQFVDNWKDKQLEG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++L   S+E K +++  V+E    ++ A  L +  A  + GG GGG+P MAQ+GG N  
Sbjct: 803 VLVLA-TSEEGKVNLIAAVSEAYRSKYPAGKLIKEVAARV-GGNGGGKPDMAQAGGKNPE 860

Query: 884 KADQAIAGVASFL 896
              +A+A V  ++
Sbjct: 861 ALPEALAFVKEWI 873


>gi|225181972|ref|ZP_03735405.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167334|gb|EEG76152.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 872

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/907 (39%), Positives = 523/907 (57%), Gaps = 49/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR+TFLEFF+   H +LPS SLIP NDPTL+   +GM P K  FTG++ P    
Sbjct: 1   MKS-KEIRSTFLEFFKGKEHLVLPSFSLIPQNDPTLLMVGAGMAPLKPYFTGEKTPPKPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V T QKCVR      D++ VGRT+RH TFFEMLGNFSFG YFKE AI  AW+L+T  + L
Sbjct: 60  VATCQKCVRT----PDIERVGRTSRHATFFEMLGNFSFGDYFKEEAILWAWELVTTGYKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY++VY +D+EA+ +W K  G++ ++I R+   DNFW + + GPCGPCSEI++D G
Sbjct: 116 PEDKLYVSVYLDDDEAYDIWHKKVGIAPERIFRLGKEDNFWEIGQ-GPCGPCSEIYYDLG 174

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G P      + +R++E+WNLVF QF      E   L + +IDTG GLER+A VLQ
Sbjct: 175 ADRGCGRPNCEVGCDCDRFLEVWNLVFTQFNCTESGEYVPLTQKNIDTGAGLERLAVVLQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  + L+    +VT  +Y  +     + R+I +HLR  SF++ DGILP NEG
Sbjct: 235 GVNNLFEIDTVRPLLDHFSKVTKTEYGKDQEKDTSLRIITEHLRGISFMVGDGILPGNEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + ++LG  EP + + +  +  E G  YPEL + +  I++ +R E+E
Sbjct: 295 RGYVLRRLLRRAVRHGKILGVGEPFLHNAVNLVVDEYGEFYPELAKGREYIQKVVRLEEE 354

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TL++G+ +LD ++   G   +L GD AFKLYDT+G P+D+ ++IL    L  +D  
Sbjct: 355 RFHETLEQGMKILDELMHKAGPRGVLPGDAAFKLYDTYGFPIDLTKEILAENKLI-LDEE 413

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + +ALE QR RAR+       G  +  + SL++    T+F GYD L             
Sbjct: 414 GYQEALEAQRERARSARGASVFGKDDTDYESLRQL--TTEFTGYDSLE------------ 459

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V AI++ G+       G + EVV   TPFY E GGQ GDTG  I 
Sbjct: 460 -----------AEGEVLAILKDGQPASAVSEGDEAEVVLSVTPFYGERGGQAGDTGIIIT 508

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG  +++TD         +H   +++G +    +    +    R  +  NH+ATHL+H A
Sbjct: 509 DGGTMEVTDTVMTPFEQVIHRGSIKQGTVSVGDAAKGKVFAPGRSSICRNHTATHLIHTA 568

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +TPD LRFD T+    T  +L  +E  VN+ I  N PV   + + 
Sbjct: 569 LQEVLGEHVKQAGSLVTPDRLRFDFTNLSAATPEQLAEVEQKVNEKIWANEPVSVTLASL 628

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL   KY D VR+V V     G +S  LCGGTHV S GEI LL IVSE+ I
Sbjct: 629 DEAKDMGATALFDEKYGDAVRIVRV-----GDYSMELCGGTHVQSAGEIGLLKIVSEAGI 683

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG  A      +++ L+  A+ LK S   +  R+  +  E++ LQ  + +
Sbjct: 684 GAGMRRIEALTGAAAYRWFAQRNQLLEQCAAQLKSSPEQLPERISGLQAEFKDLQREYQR 743

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +L+L   ++        + + V  +S  +S  + + L+ + D L+ K+ SGII+L G +
Sbjct: 744 LQLKLAGMEVDGLLSEVSQKSGVPVLSARVSAGNMETLREMADRLKNKLGSGIIIL-GAA 802

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E K  ++  VT DL+   ++A  L    AK+ GGGGG GRP MAQ+GG + +K + A+ 
Sbjct: 803 AEGKVLLVGAVTNDLVKAGYHAGKLVGEVAKLTGGGGG-GRPDMAQAGGKDPDKLESALE 861

Query: 891 GVASFLK 897
            V S ++
Sbjct: 862 KVDSLVE 868


>gi|331091263|ref|ZP_08340104.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404710|gb|EGG84249.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 879

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/906 (38%), Positives = 513/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 6   VNELRKMFLDFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIKWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+EDEEA+++W K  G++ ++I +    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEEDEEAYEIWNKEMGIAPERIFKFGKADNFWEHGS-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+   K     L + +IDTGMGLER+A+++Q+  
Sbjct: 181 GCGRPDCTVGCECDRYMEIWNNVFTQFDNDGKGHYEELEQKNIDTGMGLERLASIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L +    + G +Y       V+ RVI DH+RS +F+I+DGI+P+N GRGY
Sbjct: 241 SIFDVDTLKALREHICTLAGTEYGKEYSKDVSIRVITDHIRSVTFMISDGIMPSNNGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG     +  L   +       YPEL + K  I   +R E+E+F 
Sbjct: 301 VLRRLLRRACRHGRILGIEGQFLTKLCETVINGSKDGYPELEEKKDAIFNVIRQEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  ++  +   K+  L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLGILSEMIQEMTEKKETTLSGENAFKLYDTYGFPLDLTKEILEEKGF-DIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++EEQR +AR           +   +   +    T+F+GYD L              
Sbjct: 420 FKTSMEEQRVKARKARGVSNYMGADATVYDEIDPSVTTEFVGYDHLTYD----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EIV     G+K  +  ++TPFYA  GGQ GD G    +
Sbjct: 469 ------------SDITVLTTENEIVNTLSEGEKGTIFVNRTPFYATMGGQEGDKGLITTE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + +  K   G   H   V +G      ++ L+++   R     NHSATHLL  AL
Sbjct: 517 HAEFAVEETVKLLGGKVGHVGKVTKGSFTVGDAVNLSVEENGRANTCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H   +T  E+   E+ VN  IA+N  V+T +MN E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFVHFSAMTPEEIAKTEELVNAEIAKNNAVITEVMNIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA AL G KY + VRVVS+     G  S  LCGGTHV++TG I    I+SE+ + 
Sbjct: 637 QAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVANTGMITTFKILSEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG    ++    +++L   A   K +   +  +VE +  E + LQ      
Sbjct: 692 SGVRRIEALTGDGVFAYYREMEKELNEAAKVAKATPAQLKDKVEHMLSEIKSLQSEVEAL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  +  ++  + +VD   L+ + D L++K+  G++++   S 
Sbjct: 752 KSKLAKDALGDVMNQITEVKGIKLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVIAS-SA 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K +++ +VT+  +++  +A +L +  A ++GGGGG GRP+MAQ+GG N      AIA 
Sbjct: 811 NGKVNLIAMVTDGAMEKGAHAGNLIKGIAALVGGGGG-GRPNMAQAGGKNPAGIPDAIAK 869

Query: 892 VASFLK 897
           V   L+
Sbjct: 870 VQEVLE 875


>gi|254455521|ref|ZP_05068950.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082523|gb|EDZ59949.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 888

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/912 (44%), Positives = 601/912 (65%), Gaps = 44/912 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +++ IR TFL++F+KN H ++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  YQ  
Sbjct: 4   KSLNEIRNTFLKYFEKNDHRIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AWDL+T++F +D
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIHYAWDLITRDFGID 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY ED+EAF  WKKI+G + D+IIRI T+DNFWSM ETGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVYHEDDEAFNFWKKIAGFNDDRIIRIATSDNFWSMGETGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+  E+G+R+IEIWNLVFMQFEQ +K++R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLAGGLPGTKDEDGDRFIEIWNLVFMQFEQISKEKRIDLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D FK +I ++ ++  +K + +N+ + RVI DHLR+SSFLIA+G+LP+NEGRGYV
Sbjct: 244 HDNYETDHFKKIINSASEILKVKSDNSNLSSFRVIADHLRASSFLIAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  EP+  +L   L  EM   YPEL++A+ LI+ETL+ E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSNEPVFFNLFETLRDEMKGNYPELVRAESLIKETLKMEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  +S +  D++L G+VAFKLYDT+G PLD+ +DIL  + ++ ID   F  
Sbjct: 364 LLDRGIKILNEEISKI--DKVLPGEVAFKLYDTYGFPLDLTEDILRNKSMS-IDSEKFQS 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++E R  A+ +  G G    E +WF +K+K GAT+F+GY+                   
Sbjct: 421 LMKESRELAKKNWKGSGDAAVEDVWFGIKDKLGATEFLGYET------------------ 462

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                N     V ++++  + V+E  +G +  ++ +QTPFY E+GGQ+GDTG   G+  +
Sbjct: 463 -----NQAEGAVLSLLKDNKEVDELKNGDEGMIIVNQTPFYGESGGQVGDTGEIAGNDFK 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++TDVQKK   +FVH+  V  G ++ + ++ L I+ + R      HSATHLLH +L  +
Sbjct: 518 FEVTDVQKKLGDLFVHYGKVINGSIQLKDNVELKINVERRDDTRAYHSATHLLHESLRRV 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD +H KPI + E+  IE  VN+++++   V TR+M  ++A+
Sbjct: 578 LGKHVTQKGSLVEPSRLRFDFSHMKPIQTEEIDKIEGFVNNMVSKKSDVKTRLMTPDEAV 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY + VRV+S+  +DG   S+ LCGGTHV +TG+I    IVS+SSI AG+
Sbjct: 638 ENGALALFGEKYGEEVRVLSMGDDDGSYFSTELCGGTHVRNTGDIGKFKIVSQSSIAAGV 697

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-----WEE--------- 766
           RRIEA+  ++   +L  +++     +        N+  ++ E+      +E         
Sbjct: 698 RRIEALRDKQLEDYLNNKEKLSNISSEKNDQIINNLSEQITELGGKPSLDESDQRILIKN 757

Query: 767 -YRKLQLIHAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
             ++L+ I     L+   ++ +   +I  +      +  +  KEL+ ++D  +K++  GI
Sbjct: 758 LTKQLETISVNSILEDKTKNIIKDEQINGIKIRFQNVDGLPPKELRKLVDKGKKELSEGI 817

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++   +K+ K  + + VT+ L ++F+AV   +  ++++GG GGGGR   AQ+GG + +K
Sbjct: 818 VIVFA-AKDDKVGIAVGVTDTLTNKFDAVKFVKTGSEIIGGQGGGGRKDFAQAGGQDKSK 876

Query: 885 ADQAIAGVASFL 896
            D+A   + + +
Sbjct: 877 IDEAFEKLKTLI 888


>gi|152976803|ref|YP_001376320.1| alanyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|205829984|sp|A7GT67|SYA_BACCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152025555|gb|ABS23325.1| alanyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 880

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFKEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWHEKIGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDPSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q    N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQNVPTNFDTDLFMPMIGATESISGEKYRSGDAEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNMNRPFMYELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPVELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHAGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D+G  + DG+++ + DVQK   G  +H  +VE G+L  + ++   ID +NR  +  NH
Sbjct: 508 IADSGYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGVLTKDATVKAVIDTKNRSSIVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTAERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKAAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      +   +  +N ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDAVVSVDGINVLATKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +I+L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVIVLAAV-NDDKVNILAGVTKDLVGQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + D+A+A V  ++K
Sbjct: 861 PAQVDEALAFVQEYVK 876


>gi|20807697|ref|NP_622868.1| alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22096187|sp|Q8RAH4|SYA_THETN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|20516247|gb|AAM24472.1| Alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 878

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/907 (39%), Positives = 537/907 (59%), Gaps = 52/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SL+P ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLVPKNDKSLLLINSGMAPLKPYFTGKETPPSRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ + +   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHATFFEMLGNFSFGDYFKKEAIPWAWEFVAEVLKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T+Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVTIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             G P      ++ +RY+E WNLVF QF +  +     LP  +IDTGMGLER+A ++Q  
Sbjct: 181 GCGKPDCGIGCDDCDRYVEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIAAIMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +D+D+ + +      +  ++Y  + +  V+ RVI DH+R  +F+I+DGILP+NEGRG
Sbjct: 241 DTIFDVDVIRGIRDFISDLAEVEYGKDADKDVSIRVITDHIRGITFMISDGILPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I++ ++ E+ERF
Sbjct: 301 YVLRRLLRRAARHGKLLGLNDAFLYKVVDSVVENYGGAYPEIIERKDYIKKIIKLEEERF 360

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  ID  
Sbjct: 361 KETVDQGLAILQDYINELKAQGKTVLEGAKAFKLYDTYGFPLDLTKEILQESGIT-IDEE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            + + LE+QR RAR+      S   + I+ +L +   +T+F+GY++              
Sbjct: 420 GYKEELEKQRVRARSSRKEDNSLWEQDIYSTLGDI--STKFVGYEVYES----------- 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V AIV+  E+VE+A +G  V ++ D TPFYAE+GGQ+GD+G    
Sbjct: 467 ------------EAKVLAIVKDNEVVEQAEAGDDVSIILDVTPFYAESGGQVGDSGVIEE 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +   +++ D  KK    F+H   VERG++     +V  ID   R+  + NH+ATHLLH A
Sbjct: 515 EDTLIKVNDC-KKVGNKFIHIGTVERGLISVGDKVVAKIDVSKRKGAARNHTATHLLHKA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q+GS +  D LRFD +H + ++  ELK IE+ VN+ I + LPVV    N 
Sbjct: 574 LKEVLGDHVNQSGSLVAYDRLRFDFSHYQAVSKEELKKIEERVNEKIYEQLPVVVEEKNY 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           EDA+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++
Sbjct: 634 EDALKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTSEIGIFKIVSESAV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG  A  +L  Q E L  ++  LK  +  VV ++E + +  +  +     
Sbjct: 689 GAGLRRIEALTGIEAIKYLNEQKEILDRVSETLKAQEKEVVSKIENLQQSLKDKEREIEG 748

Query: 777 RKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K ++     E L  S   +  V  ++  + + D + LK++ D L+ +++S  ++L   S
Sbjct: 749 LKTKIASILAETLIDSAISVDGVKVIASRVEDYDMEALKTLGDILKDRLKSAAVILASSS 808

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K+ KA  + + T+D +++  N   + + +   +  G GGGR  MAQ  G N +K  +A+ 
Sbjct: 809 KD-KALFVGMATKDAVEKGVNMGAVIKETCS-IAEGNGGGRAEMAQGTGKNISKVKEALE 866

Query: 891 GVASFLK 897
                +K
Sbjct: 867 KAIEIVK 873


>gi|319941405|ref|ZP_08015733.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319805025|gb|EFW01855.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 875

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/913 (40%), Positives = 526/913 (57%), Gaps = 58/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR TFL+F++  GH ++ SS ++P NDPTL+FTN+GM  FK+++ G +   Y+  
Sbjct: 1   MKVADIRRTFLKFYESKGHTIVASSPVVPGNDPTLLFTNAGMNQFKDVYLGFDHRPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F L 
Sbjct: 61  TTSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIHFAWELLTEHFHLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L++TVY ED+EA+ +W K  G+ AD+I+RI  N       DNFW M +TGPCGPCSE
Sbjct: 121 PEKLWVTVYAEDQEAYDIWHKEVGIPADRIVRIGDNKGARYMSDNFWMMGDTGPCGPCSE 180

Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RY+EIWNLVFMQF +  K E   LP+ SIDTGMGLER+
Sbjct: 181 IFYDHGPSVQGGPPGSPEEDGDRYMEIWNLVFMQFYRDEKGEMHKLPRPSIDTGMGLERI 240

Query: 234 ATVLQEKTNNYDIDLFKHLI----QASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           ATVLQ   +NYDIDLFK+L+     A E V+ +  + N+  + +VI DH+R+ +F +ADG
Sbjct: 241 ATVLQGVHSNYDIDLFKNLLAAAKAAVESVSTVPADINSP-SLKVIADHIRACAFCVADG 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P NEGR YVLRRI RRA+ +   LG   P    L+ A+  EMG AYPEL+  +  IE+
Sbjct: 300 VVPGNEGRAYVLRRICRRALRHGYKLGARGPFFYKLVDAVRKEMGEAYPELMNHE--IEK 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            + +E+ RF +TL +G+ +LD  ++   K  +L GDV FKL+DT+G P D+  D+   RG
Sbjct: 358 VIEAEERRFLQTLSKGMDILDAAIAE-NKTGVLPGDVVFKLHDTYGFPADLTADVCRERG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           ++ ++   F+ A                +    K+   L      T F GY+ L      
Sbjct: 417 IS-VNTAEFDAA-------MERQRAAARASAKFKMAQGLDYTGADTVFTGYETL------ 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+   GE V+   +G +  VVF++TPFYAE+GGQ+G
Sbjct: 463 ----------------TEKDAEVVALYANGEPVDRVEAGSECVVVFNRTPFYAESGGQVG 506

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G A      L++ D  +    +      V  G +       L +D   R   + NHS 
Sbjct: 507 DQGEAKNATAILKVLDTFRVKAAVTGLQCHVAEGHVAVGDKFDLAVDEARREATARNHSV 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL T+LG  V+Q GS +TP+  RFD ++ KP+T+ ++  +E  VN  I +N PV
Sbjct: 567 THLMHFALRTVLGDKVAQKGSLVTPESTRFDFSYGKPVTAEQIAEVERIVNAQILKNTPV 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            TR++  E+A  +GA  L G +Y + VRV+ +        S+  CGGTHV +TG+I    
Sbjct: 627 QTRVLPIEEAKKTGAVMLFGERYGEVVRVLDIGK------STEFCGGTHVKATGDIGFFK 680

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +VSES I AG+RRIEA+TG  A S +   +  L + A   K     V  +  +     R 
Sbjct: 681 VVSESGIAAGVRRIEAVTGMNALSWVQNTESLLAATAREFKAPVSEVPVKAADAIATIRT 740

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+    + K Q+  +           +  V  +   +   D+K L+  MD ++ K+ S +
Sbjct: 741 LEKGIDQLKSQMAAKAGDALIAEACDVKGVKVLLARLDGADAKALRETMDKVKDKLGSAV 800

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +L  ++ E +  +   VT+DL  R  A +LA   A +LGG GG G+P +A +GG +  K
Sbjct: 801 AVLASVTGEDRVQLAAGVTKDLTGRVKAGELAGFVAGLLGGKGG-GKPDLAMAGGSDVKK 859

Query: 885 ADQAIAGVASFLK 897
             +A+    ++++
Sbjct: 860 LPEALEAARAWIE 872


>gi|270157134|ref|ZP_06185791.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164461|ref|YP_003454599.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150]
 gi|269989159|gb|EEZ95413.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857634|emb|CBJ11474.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150]
          Length = 860

 Score =  901 bits (2328), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/904 (41%), Positives = 540/904 (59%), Gaps = 53/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  F ++F K+GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E   YQ 
Sbjct: 1   MKS-SEIRQAFFDYFTKHGHQLVESSSLIPANDPTLLFTNAGMVQFKDVFLGVEARSYQR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+ LT+   L
Sbjct: 60  AVTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTQVMRL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
            + RL++TVY ED+EA  +W K   +SA +  R    DNFWSM +TGPCGPC+EIF+D  
Sbjct: 120 PEERLWVTVYKEDQEAEDIWLKEMKVSAARFSRCGEKDNFWSMGDTGPCGPCTEIFYDHG 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G      E+G+RYIEIWNLVFMQF +  +     LPK S+DTGMGLER+A V+Q 
Sbjct: 180 PEIPGGPPGSPDEDGDRYIEIWNLVFMQFNRDKEGHLHPLPKPSVDTGMGLERLAAVVQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+ID F++LIQ+  ++  +     N+ + +VI DH+RSS+FLIADG++P NEGRGY
Sbjct: 240 VHSNYEIDTFQYLIQSIAKLGEVTDL--NLTSLKVIADHIRSSAFLIADGVIPGNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG   P   HL+ +L T MG AYPELIQ+K  IE  L  E+ +F 
Sbjct: 298 VLRRIIRRAIRHGNKLGLPTPFFSHLVESLITVMGDAYPELIQSKSHIERVLNQEENQFA 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL   +  LG  E ++G +AFKLYDT+G P+D+  DI   +GL  +D+  FN
Sbjct: 358 RTLEQGLRLLQEQMHSLGGHE-ISGQIAFKLYDTYGFPIDLTADIAREQGL-FVDMNGFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++QR +++A S           + +  +    + F GY+                  
Sbjct: 416 QLMQQQREQSQAASQFS------VDYNANTQLDYQSDFHGYEKKE--------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   V + + A++Q G  V+    G K  VV D TPFYAE+GGQ+GD G       
Sbjct: 455 --------VEAKIIALLQDGMEVQVLNQGMKGAVVLDHTPFYAESGGQVGDKGMLTSTNF 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R ++ D QKK + I VH+  +  G    +  +   ID + R  + +NH+ATHLLH AL  
Sbjct: 507 RFRVDDTQKKGQAI-VHYGEMLDGTATLKQFVHAQIDNERREAIRLNHTATHLLHAALKA 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++G  V Q GS +  +  RFD +H + +T+ +++ IE  VN+ +  N  VVTR+M+ E A
Sbjct: 566 VVGPQVQQKGSLVDAERARFDFSHFESLTAEQIQEIECLVNEQVRANNEVVTRLMDIESA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             SGA AL G KY D VRV+S+     G  S  LCGGTH   TG+I L  I++E  I +G
Sbjct: 626 KKSGAVALFGEKYADEVRVLSM-----GEFSKELCGGTHARRTGDIGLFKIIAEYGIASG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-- 777
           IRRIE +TG+ A + +  Q   L  LAS LK +  N+  +V ++  E + ++   AK   
Sbjct: 681 IRRIEMVTGRYALAWVNEQQALLNELASSLKTTATNLSDKVGQLLAENKSMEKEIAKLQT 740

Query: 778 -KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            K+Q +  DL     K+  ++ +   +  VD++ L++ +D L+ +++S +I+L  + ++ 
Sbjct: 741 EKVQKSGADLANEVEKVNGISLLIKQLEGVDNQTLRTTLDQLKSRLESAVIVLFTL-EQN 799

Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +V+  V++ +L +   A  L R        G GGGR  MAQ GG      +  +  + 
Sbjct: 800 KMNVIAGVSKSILGKVPAAATLVRHLC-----GKGGGRDDMAQGGGEVPADFESRLKEIK 854

Query: 894 SFLK 897
             ++
Sbjct: 855 EMVR 858


>gi|71275909|ref|ZP_00652192.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon]
 gi|71899253|ref|ZP_00681415.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1]
 gi|170729338|ref|YP_001774771.1| alanyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|205830290|sp|B0U1K9|SYA_XYLFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71163286|gb|EAO13005.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon]
 gi|71730986|gb|EAO33055.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1]
 gi|167964131|gb|ACA11141.1| Alanine--tRNA ligase [Xylella fastidiosa M12]
          Length = 884

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/910 (40%), Positives = 545/910 (59%), Gaps = 50/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR+ FLEFF+  GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK     V 
Sbjct: 8   TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI  AW+LLT  ++L  
Sbjct: 68  DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            RL +TVY  D+E++ LW+ + G+  D+I+RI  N       DNFW MA+TGPCGPC+EI
Sbjct: 128 ERLLVTVYRTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187

Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I  G      E+G+R+IEIWNLVFMQF++Q+      LP   +DTGMGLER+A
Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ    NY+IDLF+ LI  + ++T +    N  +   VI DH R+ +FLI DG+LP+N
Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSLC--VIADHSRACAFLIVDGVLPSN 305

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA+ +  +LG  +P   +++P L   MG AYP+L  A   +  TL +E
Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI   RG+  +D
Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  F  A+ +QR  ARA       G   ++          T F+GY+ L+          
Sbjct: 424 MAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQADGLR----- 475

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V A++  G + + A  G +V V+ D+TPFYAE+GGQ+GD G  
Sbjct: 476 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518

Query: 535 I-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +  DG+RL++TD QK       H   + +G ++    L  ++    R+ +++NHSATHLL
Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVTRIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL ++ G+HV+Q GS + PD LRFD +H +PI++A++  IE  VND +  N  V+   
Sbjct: 579 HCALRSVFGTHVAQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A+ +GA AL G KY + VRVV +        S  LCGGTH++ TG+I L  I+SE
Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVKMG------TSVELCGGTHITRTGDIGLFKIISE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +  + L+  
Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +     +   +ADV  ++  +  +D K L+  +D L+ ++   +I+L 
Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG +G     A
Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGEDGPSLRSA 871

Query: 889 IAGVASFLKK 898
           + GVA+++K+
Sbjct: 872 LDGVATWVKQ 881


>gi|134302304|ref|YP_001122273.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|205830098|sp|A4IZ01|SYA_FRATW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134050081|gb|ABO47152.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 865

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/900 (42%), Positives = 533/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|254931439|ref|ZP_05264798.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293582990|gb|EFF95022.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262]
          Length = 879

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 513/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ++G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTE-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 467 ---------------QVSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|328676860|gb|AEB27730.1| Alanyl-tRNA synthetase [Francisella cf. novicida Fx1]
          Length = 865

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/900 (42%), Positives = 532/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQFKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    I +L   + + K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTKLIAVLTTTNAD-KV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|118497373|ref|YP_898423.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|195536062|ref|ZP_03079069.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
 gi|205830097|sp|A0Q604|SYA_FRATN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118423279|gb|ABK89669.1| alanyl-tRNA synthetase [Francisella novicida U112]
 gi|194372539|gb|EDX27250.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 865

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/900 (42%), Positives = 531/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L  +MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  Q R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  I+SE  I +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L+  +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  +     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|313608702|gb|EFR84533.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
          Length = 879

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKSLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRVSVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVEGD-KVNLISAVSEEAIKSGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|47093426|ref|ZP_00231191.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|226224105|ref|YP_002758212.1| alanyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824437|ref|ZP_05229438.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852128|ref|ZP_05241476.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|300764830|ref|ZP_07074820.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|47018205|gb|EAL08973.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|225876567|emb|CAS05276.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605431|gb|EEW18039.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|293593673|gb|EFG01434.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514506|gb|EFK41563.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|328465542|gb|EGF36771.1| alanyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 879

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|291524925|emb|CBK90512.1| alanyl-tRNA synthetase [Eubacterium rectale DSM 17629]
          Length = 886

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/911 (37%), Positives = 504/911 (55%), Gaps = 54/911 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 7   VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ 
Sbjct: 67  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFF 177
           RLY ++Y ED+EAF +W K  G+  D+I R          DNFW     GPCGPCSEI++
Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHGA-GPCGPCSEIYY 181

Query: 178 DQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+GE    G P      + +R++E+WN VF QF          L   +IDTGMGLER+A 
Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q+  + +DID  K +     +++G KY  +  + V+ R+I DH+RSS+FLI+DG++P+
Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I + L  
Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL  +G  
Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEILEEKGFT 421

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F   +E QR +AR           +   ++  +    T+F GYD L        
Sbjct: 422 Y-DEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD------ 474

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            ++ +  +    ++VE    G K  V+   TPFYA  GGQ GD 
Sbjct: 475 -----------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGDK 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K     + H   V  G++RT     L++D + R     NHSATH
Sbjct: 518 GIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I + + V T
Sbjct: 578 LLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVRT 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I +  I+
Sbjct: 638 DIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKVFKIL 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  E + LQ
Sbjct: 693 SESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMAEMKALQ 752

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K +   + L         +  +  ++  +  VD   L+ + D+L++K+  G+I+
Sbjct: 753 SENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVIV 812

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   S E K +++ + T+  +    +A +L +  A  +GGGGG GRP+MAQ+GG N    
Sbjct: 813 LAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGGG-GRPNMAQAGGKNPAGI 870

Query: 886 DQAIAGVASFL 896
             AIA V   L
Sbjct: 871 PDAIASVKDAL 881


>gi|291545954|emb|CBL19062.1| alanyl-tRNA synthetase [Ruminococcus sp. SR1/5]
          Length = 880

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/907 (40%), Positives = 521/907 (57%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG EKP    VTT
Sbjct: 6   VNELRKMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPRTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIHWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +DEEAF +W K  G+ +++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYLDDEEAFNIWNKEVGIPSERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +YE N  + V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTICALRNLVCEIAHKEYEKNYADDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +     + YPEL + K  I   L +E+ +F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGTFLAKLSAQVIESSKAGYPELEEKKEFIFRVLTNEENQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K  ++ L+GD AFKLYDT+G PLD+ ++IL  +G  GID   
Sbjct: 361 KTIDQGLRILSDMEEDMKKAGEKTLSGDNAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+EEQR +AR           +   +   +    T+F+GYD L              
Sbjct: 420 FQKAMEEQRVKARTAREVTNYMGADATVYDDIDVNVTTEFVGYDHL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + EIV+    GQK  V  +QTPFYA  GGQ GDTG     
Sbjct: 466 ---------TFDSKVTVLTTETEIVDSLTEGQKGTVFVEQTPFYATMGGQEGDTGVIETA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             +  + D  K   G F H   +E G++ +  ++ L ++ + R+    NHSATHLL  AL
Sbjct: 517 NGKFVVEDTIKLRGGKFGHVGHMESGMISSGETVSLKVNEEARKDTEKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H + +T+ EL++ E+ VN  I   L V T +M+ E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTAEELQATEELVNKEIQAGLDVHTDVMDVE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV +T  IML  IVSES I 
Sbjct: 637 EAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVSESGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+    +   Q+E L   A  LK +   VV ++  +  E + LQ  +   
Sbjct: 692 AGVRRIEALTGKAVIEYYRKQEELLHEAAKALKANTAEVVEKISHLQAEVKALQSENESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +     L        ++  V  ++  +  VD   L+ + D L++++  G+++L  +  
Sbjct: 752 KSKAAQSALGDVMDKVVEVNGVKLLAAKVEGVDMNGLRDLGDKLKEQLGEGVVLLAAV-N 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K ++L + T+       +A +L +  A ++GGGGG GRP+MAQ+GG N  KA +A+  
Sbjct: 811 DGKVNLLAMATDAAQKAGAHAGNLIKAVATIVGGGGG-GRPNMAQAGGKNPEKAQEAMDA 869

Query: 892 VASFLKK 898
            A  L+K
Sbjct: 870 AAGILEK 876


>gi|258592084|emb|CBE68389.1| alanyl-tRNA synthetase [NC10 bacterium 'Dutch sediment']
          Length = 886

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/906 (41%), Positives = 530/906 (58%), Gaps = 44/906 (4%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL FF++NGH ++ SSSL+P  DPTL+FTN+GMVPFK +F G +   Y+   ++Q
Sbjct: 9   EIRERFLRFFERNGHTVVASSSLVPAGDPTLLFTNAGMVPFKGVFLGTDPRPYRRAVSIQ 68

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+  W  LT E +L   RL
Sbjct: 69  KCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEGAIEYGWAFLTCELELPADRL 128

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
           + T+Y +D+ A +LW++++GL +D+I+R+   DNFWSM ETGPCGPCSE+ FDQG  I  
Sbjct: 129 WATIYKDDDAAGELWQRLTGLPSDRIVRLGEKDNFWSMGETGPCGPCSELIFDQGPTIGC 188

Query: 186 GLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           G P  + E   +RY+E+WNLVFMQF +        LPK SIDTG GLERMA V Q  T+N
Sbjct: 189 GRPTCTIECGCDRYLELWNLVFMQFNRDASGTLTPLPKPSIDTGAGLERMAAVCQGVTSN 248

Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ DL + LI   E+++  +Y  +  + ++ RVI DH R+ +F +ADG+LP+NEGRGYVL
Sbjct: 249 FESDLIRPLIATVEELSQKRYGADEKDDISMRVIADHARAVTFALADGVLPSNEGRGYVL 308

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ + RLLG  EP +      +   M  AYPEL  ++  +E     E++RFG  
Sbjct: 309 RRILRRALRHGRLLGLDEPFLASTTHRVIDLMTDAYPELPASRAHVERLAWIEEDRFGIV 368

Query: 362 LDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           L   L  L  ++  +        IL G   F+LYDT+G+P D++ +I   + + G D   
Sbjct: 369 LREALPRLHDLIEKIKSQTAEQAILPGSKLFELYDTYGVPRDLIDEIAVEQSV-GCDWNG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   L  QR  +RAH    G        F    K   T F+GY+ L              
Sbjct: 428 FEIELRHQRETSRAHLKAFGDVQGVAEAFHDLVKTRRTVFLGYERLD------------- 474

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                     + + V A++  G  V+    GQ+ EVV DQTPFYAE+GGQ+GD G   GD
Sbjct: 475 ----------LEASVVAVIVGGTQVDRMGVGQEGEVVLDQTPFYAESGGQVGDAGYLRGD 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+  ++ D ++   G+ VH   V+RG  R+   L+ +++   R     NH+ATHL+H AL
Sbjct: 525 GVLAEVLDTKRPLAGLIVHRVRVKRGEFRSGQRLLASVEADRRSTTVKNHTATHLVHAAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS + PD LRFD  H  P++ AE+  IE+ VN  +  N+PVV   M  +
Sbjct: 585 RQILGDHVRQEGSLVAPDRLRFDFRHYGPVSPAEITQIEEMVNAKLWANVPVVVEEMRLD 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+A GA A  G KY D VRVV V        S  LCGGTH  STGEI LL I  E+ + 
Sbjct: 645 EALAKGALAFFGDKYGDEVRVVGV-----ADFSIELCGGTHTKSTGEIGLLKIAHETGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG  A  +L  + E L+  A  LK     V  +VE +++  R  +    + 
Sbjct: 700 AGIRRIEALTGPGAFQYLKREGEVLRESADRLKSKPLEVPEKVERLFDSARAFEREVQRL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L  E          +++ V  ++ ++ + D + L+ ++D ++ KI+SG+I+L   S 
Sbjct: 760 RAKLGAEMAEELLNKATRVSGVMVVAGLVEQCDQRALRELVDRVKTKIESGVIVLA-TSL 818

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + +   +  VT DL  R +A  L +  A  + GG GGGR  +A++GG N ++ D+A+  V
Sbjct: 819 DGRVGWVAAVTPDLTSRLHAGKLVKEVAN-ITGGSGGGRADLAEAGGKNLDELDRALQLV 877

Query: 893 ASFLKK 898
              +K+
Sbjct: 878 PELVKQ 883


>gi|217964349|ref|YP_002350027.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|217333619|gb|ACK39413.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|307571085|emb|CAR84264.1| alaS [Listeria monocytogenes L99]
          Length = 879

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNIHRVSVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|167037465|ref|YP_001665043.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167040127|ref|YP_001663112.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|300914211|ref|ZP_07131527.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307724554|ref|YP_003904305.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|320115879|ref|YP_004186038.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|205830277|sp|B0K994|SYA_THEP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830278|sp|B0K0Q1|SYA_THEPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|166854367|gb|ABY92776.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|166856299|gb|ABY94707.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|300889146|gb|EFK84292.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561]
 gi|307581615|gb|ADN55014.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|319928970|gb|ADV79655.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 877

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/907 (39%), Positives = 535/907 (58%), Gaps = 51/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     Q+  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I  K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 ETIDQGLTILQDYINELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      S   + I+ +L +    T+F+GYD    +           
Sbjct: 420 YTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYESN----------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    +
Sbjct: 467 ------------SKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILENE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ D  KK    F+H   +ERG++     +   ID  +RR  + NH+ATHLLH AL
Sbjct: 515 NVLIKVKDC-KKVGDRFIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       +
Sbjct: 574 KEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYD 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++ 
Sbjct: 634 EAVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVG 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIHA 775
           AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  + +  ++   
Sbjct: 689 AGLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQL 748

Query: 776 KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K K+   + +   +       +  +   + + DS+ LK++ D L+ K+++  I+L   + 
Sbjct: 749 KIKMASILANSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKTAAIVLASSTP 808

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E KA  + + T+D++ +  N   + +   K +  G GGGRP MAQ  G N +K ++A+  
Sbjct: 809 E-KAIFVGMATKDVVQKGINMGAVIKEVCK-VSEGNGGGRPDMAQGTGKNPSKVEEALNK 866

Query: 892 VASFLKK 898
               +K+
Sbjct: 867 AIDIVKE 873


>gi|291529066|emb|CBK94652.1| alanyl-tRNA synthetase [Eubacterium rectale M104/1]
          Length = 886

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/911 (37%), Positives = 504/911 (55%), Gaps = 54/911 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 7   VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ 
Sbjct: 67  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFF 177
           RLY ++Y ED+EAF +W K  G+  D+I R          DNFW     GPCGPCSEI++
Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHGA-GPCGPCSEIYY 181

Query: 178 DQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+GE    G P      + +R++E+WN VF QF          L   +IDTGMGLER+A 
Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q+  + +DID  K +     +++G KY  +  + V+ R+I DH+RSS+FLI+DG++P+
Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I + L  
Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL  +G  
Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGENAFKLYDTYGFPVDLTAEILEEKGFT 421

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F   +E QR +AR           +   ++  +    T+F GYD L        
Sbjct: 422 Y-DEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD------ 474

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            ++ +  +    ++VE    G K  V+   TPFYA  GGQ GD 
Sbjct: 475 -----------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGDK 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K     + H   V  G++RT     L++D + R     NHSATH
Sbjct: 518 GIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I + + V T
Sbjct: 578 LLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVRT 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I +  I+
Sbjct: 638 DIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKVFKIL 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  E + LQ
Sbjct: 693 SESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMAEMKALQ 752

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K +   + L         +  +  ++  +  VD   L+ + D+L++K+  G+I+
Sbjct: 753 SENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVIV 812

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   S E K +++ + T+  +    +A +L +  A  +GGGGG GRP+MAQ+GG N    
Sbjct: 813 LAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGGG-GRPNMAQAGGKNPAGI 870

Query: 886 DQAIAGVASFL 896
             AIA V   L
Sbjct: 871 PDAIASVKDAL 881


>gi|238924198|ref|YP_002937714.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|238875873|gb|ACR75580.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 886

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/911 (37%), Positives = 503/911 (55%), Gaps = 54/911 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 7   VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ 
Sbjct: 67  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFF 177
           RLY ++Y ED+EAF +W K  G+  D+I R          DNFW     GPCGPCSEI++
Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHGA-GPCGPCSEIYY 181

Query: 178 DQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+GE    G P      + +R++E+WN VF QF          L   +IDTGMGLER+A 
Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q+  + +DID  K +     +++G KY  +  + V+ R+I DH+RSS+FLI+DG++P+
Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA  + R LG     +  +   +  E    YPEL + K  I + L  
Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F KT+D+GL +L  +  H+  D  ++L+G+ AFKLYDT+G P+D+  +IL  +G  
Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEILEEKGFT 421

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F   +E QR +AR           +   ++  +    T+F GYD L        
Sbjct: 422 Y-DEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEITTEFTGYDKLTD------ 474

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            ++ +  +    ++VE    G K  V+   TPFYA  GGQ GD 
Sbjct: 475 -----------------TAEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGDK 517

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + D  K     + H   V  G++RT     L++D + R     NHSATH
Sbjct: 518 GIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSATH 577

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS    +  RFD +H   +T+ ELK +ED VN+ I + + V T
Sbjct: 578 LLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVRT 637

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM  ++A  +GA AL G KY ++VRVVS+     G  S   CGGTHV +T +I    I+
Sbjct: 638 DIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKAFKIL 692

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AG+RRIEAITG    ++    +++L+  A  +K +  N+  R+E +  E + LQ
Sbjct: 693 SESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLIAEMKALQ 752

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K +   + L         +  +  ++  +  VD   L+ + D+L++K+  G+I+
Sbjct: 753 SENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVIV 812

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   S E K +++ + T+  +    +A +L +  A  +GGGGG GRP+MAQ+GG N    
Sbjct: 813 LAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVGGGGG-GRPNMAQAGGKNPAGI 870

Query: 886 DQAIAGVASFL 896
             AIA V   L
Sbjct: 871 PDAIASVKDAL 881


>gi|51244680|ref|YP_064564.1| alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|59798523|sp|Q6AQ16|SYA_DESPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50875717|emb|CAG35557.1| probable alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 882

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/907 (43%), Positives = 564/907 (62%), Gaps = 45/907 (4%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR+ FLE+F+ NGH +  SSSL+P +DPTL+FTN+GMV FK +F G +K  Y    T 
Sbjct: 4   NEIRSRFLEYFKGNGHTVAESSSLVPKDDPTLLFTNAGMVQFKRVFMGDDKRGYVRAVTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+ LT E  L   +
Sbjct: 64  QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWNFLTVELGLPAEK 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           ++++V+++D+EAF LW+K+  L   +I+R+   DNFW+M +TGPCGPCSEI  DQG    
Sbjct: 124 MWVSVFEDDDEAFALWEKVEDLPKGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGVGSS 183

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           P   P  +   + +R++E+WNLVFMQF +        LP+ SIDTGMGLER+A VLQ K 
Sbjct: 184 PCDNPNCAVGCDCDRFLELWNLVFMQFNRAEDGSLTALPRPSIDTGMGLERVAAVLQGKF 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NNYD DLF  +I   E ++G+KY    +     RVI DH R++SFL+ADG+LP+NEGRGY
Sbjct: 244 NNYDSDLFAPIIAVLEDISGVKYGAAADTDTAIRVIADHARATSFLVADGVLPSNEGRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ Y + LG  +P M  +  A+C EM +AYP+L+    L+E+ + +E+ERF 
Sbjct: 304 VLRRIMRRAVRYGKKLGLEKPFMDRVTKAVCAEMQNAYPQLVATAALLEKVVNNEEERFR 363

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +TL+ GLV LD  +S L   G D +++G   FKLYDT G P DI++DI   RG+ G D  
Sbjct: 364 ETLEHGLVQLDEKISQLLTSGGDAVIDGPFIFKLYDTFGFPFDIVRDIALERGV-GFDEA 422

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+ EQR+++RA   G G    ++   +L +     +F+GY+ L             
Sbjct: 423 GFATAMAEQRAKSRASRKGEGVKLHDEGVKALADAGKKAEFLGYEGLEAD---------- 472

Query: 477 CQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+V+ ++ + G  VE+ V+G+K  V    TPFYAEAGGQ+GD G   
Sbjct: 473 -------------SVVEGLLSEQGSGVEKLVAGEKGRVFVAATPFYAEAGGQMGDRGSVR 519

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G +  +   Q +  G+ +H  +VE G L   + + L +D + R+  + NHSATHLL  
Sbjct: 520 WQGGQASVYATQAEGTGLILHDLLVEEGELSLGLEVTLQVDDEERKATASNHSATHLLQA 579

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL ++LG HV Q+GS + P+ LRFD T+   +T+AE+  +E  VN+ I  N  + T +++
Sbjct: 580 ALISVLGDHVKQSGSLVGPERLRFDFTNFSQLTAAEIAQVETLVNEQIRNNAVIATDVLS 639

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +++AIA GA AL G KY+D VRVVS+     G +S  LCGGTHV +TGEI L  I+SES 
Sbjct: 640 KQEAIAGGATALFGEKYDDDVRVVSM-----GDYSRELCGGTHVGATGEIGLFVILSESG 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG+ A +++ G+      LA  L    G++V +VE +    ++ +   A
Sbjct: 695 IAAGVRRIEALTGRAALAYVQGRLSTGNELADLLSCKSGDLVPKVESLLTAVKEGEKRVA 754

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +   QL    L     +   +A +  +   +   ++K L+ + D ++  ++SG I ++G 
Sbjct: 755 QLAGQLASSGLDDLLNNALTVAGIKVVVAEVPLENAKALRELGDKVRDNLESG-IAVIGG 813

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +   K ++L +VT+DL+DR  A  +    + ++GG GG GRP MAQ+GG   +K  +AIA
Sbjct: 814 AVGGKVALLAIVTKDLVDRIQAGRIVSEVSGIVGGKGG-GRPDMAQAGGTMPDKLSEAIA 872

Query: 891 GVASFLK 897
            V + ++
Sbjct: 873 SVPAIIE 879


>gi|224457282|ref|ZP_03665755.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370663|ref|ZP_04986668.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874986|ref|ZP_05247696.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151568906|gb|EDN34560.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840985|gb|EET19421.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 865

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 533/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ ++++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|315303256|ref|ZP_07873900.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628368|gb|EFR96857.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 879

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/912 (37%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  +W+   GL+ + I+ I  +DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTIWRDKIGLTDEHIVEI--DDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDENDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ++G+KY  E  N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L +  K  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTEEYAEDHGLR- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSTFVGYNTTEY------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  I+    +V+E  +G + +++F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYIIHNDVLVDEVAAGSEAQLIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK          +V+ G+L T  ++ L++D   RR+   NH+ATHL
Sbjct: 512 TIQSETGLAHVEDVQKAPNKQNXXXVVVKEGVLTTGDTVKLSVDKVKRRETVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E  VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEKIVNEKIWEQIAVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      ++E +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKAAYHFVTEQENILKHAANLLKTTTKETPQKIELLQADLREVRR 746

Query: 773 IHAKR--KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     KL             +I  VN ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 SALDYVSTWVKE 876


>gi|290893863|ref|ZP_06556841.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|290556580|gb|EFD90116.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
          Length = 879

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKMLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|108763083|ref|YP_633939.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122387764|sp|Q1D084|SYA_MYXXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108466963|gb|ABF92148.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 898

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/920 (41%), Positives = 551/920 (59%), Gaps = 57/920 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  FL+FF++ GH  + SSSL+P NDPTLMFTN+GMV FK++FTG+E   Y+  T
Sbjct: 6   TASEIREAFLKFFEERGHRRVASSSLVPANDPTLMFTNAGMVQFKDVFTGRETRDYRRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI   W+ +T+   L  
Sbjct: 66  TSQKCVRAGGKHNDLDNVGFTARHHTFFEMLGNFSFGDYFKADAIAYGWEFVTRTLGLST 125

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL +TV+        DEEA++LWKK  G+ A+++ ++   DNFW+M +TGPCGPCSEI 
Sbjct: 126 DRLAVTVFNGEGGTPWDEEAYELWKK-QGVPAERLYKLGLKDNFWAMGDTGPCGPCSEIH 184

Query: 177 FDQGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQN-KQERFILPKMSIDTGM 228
           + QG+ IP           G + + +R++EIWNLVFMQFE++        LPK SIDTG 
Sbjct: 185 YHQGDDIPCVEEAEGKKCQGVACDCDRWLEIWNLVFMQFERKEKDGPLIPLPKPSIDTGA 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+A+V+Q K +NY+ DLF++++    ++ G  Y   +  + RV+ DH R+++FLI+D
Sbjct: 245 GLERIASVVQGKRSNYETDLFQNILATVSELCGKPYSQESGASQRVVADHSRAAAFLISD 304

Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G+ P+NEGRGYVLRRIMRRA+ +  + LG  +     ++  +   MG AYPEL +++  +
Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGTQQLGLEDVFFFKVVDRVIELMGDAYPELRESRTFV 364

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E  R E+  F +TL RGL L++  LS L K   + L+GDV F L+ T+G P D+ Q I 
Sbjct: 365 LEVCRHEETSFRQTLSRGLKLIEEELSELQKAGGKQLSGDVVFLLHGTYGFPWDLTQIIA 424

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL  +D++ F + L+E+  + +    G G   T +++  L E+ G T+F+       
Sbjct: 425 RERGL-DVDLVRFEERLKEEADKNKFA--GSGDKATGEVYLKLAERLGTTEFL------- 474

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               +     ++AIV+ G  V +A  G  VE+V D+TPFY E+G
Sbjct: 475 --------------GYEGEGHEGEGSIRAIVKDGAEVTQATQGDTVELVLDRTPFYGESG 520

Query: 526 GQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+GDTG  +G G +   ++TD Q+   G+ VH   V  G  +    +   +D + R+ +
Sbjct: 521 GQMGDTGRIVGHGGKAVAKVTDAQRPVPGLVVHSVEVSEGTFKVGDMVQAGVDSERRKSI 580

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG HV Q GS + PD LRFD  H  P TSA+L+ +ED VN  I
Sbjct: 581 RANHSATHLLHKALKLVLGEHVKQAGSVVAPDYLRFDFAHFSPATSAQLEQVEDLVNGWI 640

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N    TR+M+ EDA  SGA A+ G KY + VRVV+V  E     S+ LCGGTHV  +G
Sbjct: 641 RDNAGAETRVMSLEDAKKSGAVAMFGEKYGETVRVVTVHPE-----STELCGGTHVRRSG 695

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I SES + +G+RRI A+TG  A  H+  Q+ +L+ +A  LK +   V  RVE  
Sbjct: 696 DIGLFKIASESGVASGVRRIVALTGIGALQHVREQEHELRKVAELLKSNPKEVSKRVEAT 755

Query: 764 WEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQK 818
            +  ++L+  +     K Q         +  DVN M  + ++VD+     L+ + D L+ 
Sbjct: 756 QKRVKELERKVEEVAVKAQTASSKDLLEQARDVNGMKVLATQVDAADDNVLRGMADQLRD 815

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I+SG++  +G  K+ +A +L+  T+D++ +  NA  L R  AK +GG GG G+  MAQ+
Sbjct: 816 RIRSGVVA-IGGEKDGRAIILVAATKDVVAKGINAGALVREMAKEVGGKGG-GKAEMAQA 873

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GGP+ +K   A+  +   +K
Sbjct: 874 GGPDASKLPAALEKLYELVK 893


>gi|67459745|ref|YP_247369.1| alanyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|75535865|sp|Q4UJT5|SYA_RICFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|67005278|gb|AAY62204.1| Alanyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 878

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/890 (46%), Positives = 569/890 (63%), Gaps = 37/890 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+TVY  DEEA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYVTVYHTDEEAASYWKKIAGFRDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G++AFKLYDT+G PLD+ +DIL  R ++ +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEIAFKLYDTYGFPLDLTEDILKNRDIS-VDHKRFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLAQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKEIDTQFLLISNQTPFYGESGGQMGDIGMIFSKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G ++   +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 IEVIDTLKYLGSIIVHKCILKKGQIKIGENANFSIDIKYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVDTTLMTTEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---R 777
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++L+    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKELEKELEKVHLA 755

Query: 778 KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +L L++E +      I  V  +   I  +D+K L+   + L KK++  I++ +  + + K
Sbjct: 756 RLDLSIEQIEKQAEDIKGVKLIYRYIENLDNKVLRQAAENLTKKVEDLIVVYITGNND-K 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            S+ + V++ + D++ A  +A+  +  LGG GGGG+  +AQ+GG +  K 
Sbjct: 815 LSITVAVSKAITDKYKAGIIAKELSLFLGGSGGGGQASLAQAGGNDIGKL 864


>gi|306820448|ref|ZP_07454084.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551523|gb|EFM39478.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 880

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 528/909 (58%), Gaps = 47/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR +FL+FF+   H +  S SL+P ND +L+  N+GM P KN F G E P  + 
Sbjct: 3   FMKANDIRKSFLDFFESKEHYVKNSFSLVPKNDKSLLLINAGMAPLKNYFLGIETPPAKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T QKCVR G    D++N+G+T RH TFFEMLGNFSFG YFK  A   AW+ +TK   +
Sbjct: 63  MATCQKCVRTG----DIENIGKTARHATFFEMLGNFSFGDYFKNEATAFAWEFVTKVLKM 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFDQ 179
           D+ +L++TVY+ED+EA ++W+   G++ D+I+++   DNFW +    GPCGPCSEI+ D+
Sbjct: 119 DEEKLWVTVYEEDDEALEIWRDKVGVNPDRIVKLGKEDNFWEIGNGQGPCGPCSEIYIDR 178

Query: 180 GECIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G        + +R++E WNLVF QF++Q       L   +IDTGMGLERMA ++
Sbjct: 179 GEEFGCGHKDCKPGCDCDRFLEFWNLVFTQFDKQVDGSYKKLEHPNIDTGMGLERMACIM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   + +DID  K++     +++G KY+ +    V+ R+I DH+R+ +F+++DGI+P+NE
Sbjct: 239 QGVDSIFDIDTMKNIRDKVCEISGKKYQQDEKTDVSIRIITDHIRAITFMVSDGIVPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR+ RRAM +A+LLG  +  +  L   +       Y EL Q +  I + L+ E+
Sbjct: 299 GRGYVLRRLARRAMRHAKLLGIEQKFIETLANVVIDVYQDGYEELGQNRDYINKVLKIEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+FG+T++ G+ +L+  ++   K  +  +NG  AFKLYDT+G PL++  +I   +  + +
Sbjct: 359 EKFGETIETGMNILNQYIADSQKANNSKINGQDAFKLYDTYGFPLELTLEIAEEKNCS-V 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           DI  F   +E QR RAR           +    SL      T+FIGY+ L          
Sbjct: 418 DIEEFENQMEMQRQRARNARAKGSDIGWKDEISSLDLSVKNTEFIGYEKLED-------- 469

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           +++  IV  G++ ++A  GQ++ ++FD+TPFYAE+GGQ+GDTG 
Sbjct: 470 ---------------KAVIADIVIDGKLSDKAAQGQEIILIFDKTPFYAESGGQVGDTGL 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                + +Q+ +V K   G+F+HH  + +G L+    + L +D +NR     NH+ATHLL
Sbjct: 515 IKNATVEIQVNNVTKSTNGLFLHHCKLNKGELKKGDKVELLVDVKNRFATMRNHTATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG H+ Q GS ++PD LRFD  H   ++  EL  +E  VN+ I   + V T++
Sbjct: 575 HKALKVVLGDHIQQAGSLVSPDRLRFDFNHFAQVSKEELMKVEQLVNEQIYNAIDVQTQV 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ EDA  +GA +L   KY + VRV+S+     G  S   CGGTHV ++ EI +  IVSE
Sbjct: 635 MDIEDAKKTGAMSLFDEKYGETVRVLSI-----GEFSKEFCGGTHVKNSNEIGMFKIVSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + +G+RRIEAITG    + ++ + E +++++S LK SQ N++ R  ++  E + LQ  
Sbjct: 690 GGVASGVRRIEAITGYSVYNFIVEKQELIENVSSTLKTSQDNLLKRASDLMAENKNLQKK 749

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + +      D+        KI DVN +     +++   L+     +  K+++ +++  
Sbjct: 750 IKEVQSAGAKTDIDSVIKSAKKINDVNLVISSFEDMEDDILRDFAQNIIDKVENSVVVFS 809

Query: 829 GISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            ++ E  K + L +V ++L+ ++NA  + +  A ++ GG GGG+P+MA +GG + +K  +
Sbjct: 810 NVNTENQKLTFLCMVAKNLIPKYNAGKIVKEVA-MVTGGNGGGKPNMAMAGGKDVSKIQE 868

Query: 888 AIAGVASFL 896
           A++     L
Sbjct: 869 ALSKAEEVL 877


>gi|291286777|ref|YP_003503593.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883937|gb|ADD67637.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 877

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/905 (39%), Positives = 514/905 (56%), Gaps = 43/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLE+F ++GHE++ SSSL+P +DPTL+FTN+GM  FK+ F G+E   Y   
Sbjct: 3   MTGQEIRKKFLEYFAEHGHEIVSSSSLVPHDDPTLLFTNAGMNQFKDTFLGRETRSYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QK VRAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+  W+ LTK   L 
Sbjct: 63  TTSQKVVRAGGKHNDLENVGVTSRHHTFFEMLGNFSFGDYFKEDAIKFGWEFLTKVVGLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +++++VY++DEEA ++W+ + GL A  I      DNFW+M +TGPCGPCSEI  DQGE
Sbjct: 123 AEKMFVSVYNDDEEAAQIWRDVIGLDAKDIEYRGEKDNFWAMGDTGPCGPCSEIHIDQGE 182

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P    + E +R++E+WNLVFMQ+ +        LPK SIDTGMGLER+A+V+Q 
Sbjct: 183 HTGCQSPDCDRNCECDRHLELWNLVFMQYNRSEDGTLTPLPKPSIDTGMGLERVASVVQG 242

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            T+NYD DLF  +I+    + G KY     + V+ RVI DH R+++FLI DG+LPAN+GR
Sbjct: 243 VTSNYDTDLFLPIIKYIADLAGKKYGDSEKDNVSMRVIADHSRAATFLIGDGVLPANDGR 302

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRAM + R+LG        +   +   M   Y EL   K  I + + +E++ 
Sbjct: 303 GYVLRRIMRRAMRHGRMLGLEGAFFYKVCGFVVDFMKGHYIELADKKPYIAKVVTNEEQS 362

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL+ GL ++D +L      + ++G+  FK+YDT G P+D++ DI    G   +D   
Sbjct: 363 FSRTLNTGLKIIDELLEKNKDSKTISGEDIFKMYDTFGFPVDLLADIAEDNGY-VLDNAG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q +  Q+ RA+    G G      ++  L      ++F+GY+ L              
Sbjct: 422 FEQEMHTQQERAKKSWSGSGEQRVADVYIKLASTL-KSEFVGYEELE------------- 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AI++     E A    + +++  +TPFYAE GGQ GD G    D
Sbjct: 468 ----------AESEVAAIIKNDAQSETAEG--ECDIILTKTPFYAEGGGQAGDIGYIKTD 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++T   K  +G+       E G+++   ++   +D   RR    NH++TH+LH AL
Sbjct: 516 TAVFKVTGTHKYGDGMIAMRGFTELGVIKMGETVKAQVDKTARRATERNHTSTHILHKAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + P+ LRFD  H  P+++ E+  IE+  N+ I  N  +    MN +
Sbjct: 576 QMVLGDHVRQAGSQVNPERLRFDFNHYAPVSAEEIMRIEEIANEEIQANTALKKTYMNID 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA+ SGA AL G KY ++VRVV +     G  S  LCGG HV  TG+I LL + SE+S+ 
Sbjct: 636 DAVNSGAMALFGEKYGNKVRVVEI-----GDFSKELCGGCHVDRTGDIGLLKVTSEASVA 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+TG  A + +   D   K  A  LK +   +  R+ E+ +  +  +    K 
Sbjct: 691 SGVRRIEAVTGMAAVAGMQKLDALAKDGAKLLKTTPDGLYERMVELTDSLKDKEKELKKI 750

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             Q+  +D          ++ +  ++  ++  D+  ++  +D  + +I SG+++  G   
Sbjct: 751 ADQMASKDAAGLMDDVKIVSGIKVLAAKLANGDADAMRKFVDTARDRIGSGVVV-AGAVT 809

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           + K   +  VT+D   +  A D+ R  AK+ GGGGG GRP MAQ+GG +  K D+AIA V
Sbjct: 810 DDKVIFVCGVTKDTTGKVKAGDIVREVAKITGGGGG-GRPDMAQAGGKHPEKLDEAIANV 868

Query: 893 ASFLK 897
              ++
Sbjct: 869 EKIVE 873


>gi|229146959|ref|ZP_04275323.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228636558|gb|EEK93024.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
          Length = 880

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL    ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLITQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|56708179|ref|YP_170075.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670650|ref|YP_667207.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|81597416|sp|Q5NFW7|SYA_FRATT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123169359|sp|Q14HB9|SYA_FRAT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56604671|emb|CAG45729.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320983|emb|CAL09112.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|282159393|gb|ADA78784.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 865

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 532/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG  Y +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEVYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ ++++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|187931901|ref|YP_001891886.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|205830096|sp|B2SH99|SYA_FRATM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187712810|gb|ACD31107.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 865

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 533/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E++ F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEKLFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q  ++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDDQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLLH AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  D LRFD TH K I+ +E++ IE  VN  I  N PV T  ++++ A
Sbjct: 567 VLGGHAEQKGSLVDEDRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIEISQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDINLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|227498470|ref|ZP_03928616.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21]
 gi|226903928|gb|EEH89846.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21]
          Length = 874

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 507/908 (55%), Gaps = 55/908 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+ +GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP    +T
Sbjct: 5   TGNEIRQKYLDFFKAHGHLVLPSASLIPHDDPTLLLIGAGMAPFKPFFTGKMKPPSPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     +D++NVGRT RHHT+FEMLGNFSFG YFK+  I  AW+ LTKE +L  
Sbjct: 65  TCQKCVRT----DDIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKELELPA 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L+IT+Y +D+EA+ +W  + G+  ++I+R+   DNFW +   GPCGP SEI  D G  
Sbjct: 121 DKLWITIYPKDDEAYHIWHDVVGVPDERIVRL--EDNFWQIGS-GPCGPDSEIHIDLGAD 177

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   +  R++E+WNLVF QF Q        L   +IDTG GLER+A+V+Q K
Sbjct: 178 KGCGEPTCGPGCDCGRFLELWNLVFTQFNQNADGTYTPLKHKNIDTGAGLERLASVIQGK 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +N++ DL   +I+ + +++  KY  +    ++ +V+ DH RS +F+I DGILP+NEGRG
Sbjct: 238 PSNFETDLIFPIIELACELSHKKYNADAKTDISLKVVADHARSLTFMIGDGILPSNEGRG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RLLG     +  L   + +  G  Y EL++ K  I++ +  E+  F
Sbjct: 298 YVLRRVLRRAIRHGRLLGIRGKFLAALADKVISMYGEHYTELVEKKEFIDKVIDMEETSF 357

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL +G  LL+  ++ + K+   +L+GD AFKLYDT G P ++  +IL  +G+   D  
Sbjct: 358 LQTLSQGTDLLNEKIAAMKKENKTVLSGDDAFKLYDTFGFPWEVTDEILQEQGMTM-DKE 416

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F++A+  Q+ RAR                                  G   M + R + 
Sbjct: 417 GFDKAMASQKERARKARNDK---------------------------EGRPVMYDTRSLH 449

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGE--IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            +   +D       +V A+ Q+GE   ++E  +G  + ++   T F+AE GGQLGDTG  
Sbjct: 450 LEGLTVD-EASKEGVVAALYQEGETTPIKEGHTGDSLAIILTNTAFHAEGGGQLGDTGRL 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I D     + + +K  +G  +H   VE G      ++   ++   +  ++ NH+ATHLLH
Sbjct: 509 ISDAGIFDVENTKKLPDGTTIHLGTVESGAFSVGQAVTFEVNLDRKADIARNHTATHLLH 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS + PD LRFD +H  P+T+ E+  +ED VN+ I   + V     
Sbjct: 569 AALKKVLGGHVNQAGSYVGPDRLRFDFSHFSPLTAEEVSRVEDLVNEAILDAVDVQISEE 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY   VRVV+V       HS  LCGG HVS+T  I L  I+ ES
Sbjct: 629 DIDKAKEMGAMALFGEKYGKIVRVVNVPG-----HSMELCGGVHVSNTSRIGLFKILGES 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772
           S+ AG+RRIEA+TG  A  +    +  L+  +  +K     ++ R+E + +E +  +   
Sbjct: 684 SVGAGLRRIEAVTGHGALLYTRELEALLEDASQKVKGRPNTLLSRIEALQDELKAEKHHA 743

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829
              ++KL       +  K+ DV  +  +I EV   D   L+S+ D L+ K    +++   
Sbjct: 744 AELEQKLVAAAAQSAGDKVKDVKGIPVLIDEVKVDDVSALRSMGDQLRDKTGGIVVLFAA 803

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ +K   + +   E +    +A  + + +A+VL GG GGGRP MAQ+GG N  K  +A+
Sbjct: 804 MAPQKVNILTMASKEAVAKGAHAGKIVKAAAQVL-GGNGGGRPDMAQAGGKNSGKIAEAM 862

Query: 890 AGVASFLK 897
           A     ++
Sbjct: 863 AETLKVIE 870


>gi|30264458|ref|NP_846835.1| alanyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47529915|ref|YP_021264.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187280|ref|YP_030532.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|65321756|ref|ZP_00394715.1| COG0013: Alanyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165872747|ref|ZP_02217375.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636505|ref|ZP_02394802.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167638586|ref|ZP_02396862.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689638|ref|ZP_02880820.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170709398|ref|ZP_02899809.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653242|ref|ZP_02935494.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190566972|ref|ZP_03019888.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227817167|ref|YP_002817176.1| alanyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229602565|ref|YP_002868676.1| alanine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684144|ref|ZP_05148004.1| alanyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254736491|ref|ZP_05194197.1| alanyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741529|ref|ZP_05199216.1| alanyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751372|ref|ZP_05203409.1| alanyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757704|ref|ZP_05209731.1| alanyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|33301676|sp|Q81LK0|SYA_BACAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|30259116|gb|AAP28321.1| alanine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505063|gb|AAT33739.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181207|gb|AAT56583.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164711523|gb|EDR17072.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167513434|gb|EDR88804.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167528098|gb|EDR90895.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170125697|gb|EDS94613.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666408|gb|EDT17189.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081524|gb|EDT66596.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190561963|gb|EDV15932.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227003572|gb|ACP13315.1| alanine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229266973|gb|ACQ48610.1| alanine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 880

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D GC + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AGIRRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGIRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228954673|ref|ZP_04116696.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228805000|gb|EEM51596.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 880

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|153853058|ref|ZP_01994467.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814]
 gi|149753844|gb|EDM63775.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814]
          Length = 887

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/906 (38%), Positives = 514/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI   W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWTWEFLTEVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +D+EAF++W K  G+ A++I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSIYQDDDEAFEIWNKEIGIPAERIFRFGKEDNFWEHGA-GPCGPCSEVYYDRGEKY 188

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A ++Q+  
Sbjct: 189 GCGQPGCTVGCECDRYMEIWNNVFTQFDNDGHNNYTELEQKNIDTGMGLERLACIVQDVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      + G++Y  + N   + RV+ DH+RS +F+I+DGILP+N GRGY
Sbjct: 249 SMFDIDTLKALRDHVCNMAGVEYQKDDNTDTSIRVLTDHIRSVTFMISDGILPSNSGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I   +  E+ +F 
Sbjct: 309 VLRRLLRRACRHGRLLGIKGAFLVKLAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 368

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K+   +L+G  AFKLYDT+G P+D+  +IL  +GL   D   
Sbjct: 369 KTIDQGLSILADMEEEMKKNGEAVLSGKNAFKLYDTYGFPIDLTSEILEEKGLTY-DEKG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A +EQR+++            +   +   +   +++F+GY+ L              
Sbjct: 428 FEEAQKEQRAKSEGTFGTHNYSGKDASVYDELDAELSSEFVGYNQLE------------- 474

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                     V S V A+  + E+V+    G K  ++  +TPFYA  GGQ  D G    +
Sbjct: 475 ----------VESDVTAMTSETEVVDALTDGDKGTIIVAKTPFYATMGGQEADKGIICTE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + DV K A G F H   V +G+++    + L +D +NR     NHSATHLL  AL
Sbjct: 525 DGEFVVEDVVKLAGGKFGHVGQVTKGMIKVGDKVTLKVDKENRALAENNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS      LRFD TH   +T+ EL+ +ED VN+ I +NLPVV + M  E
Sbjct: 585 RMVLGNHVEQAGSLNNAQRLRFDFTHFSAMTAEELQKVEDIVNEKIRENLPVVIKNMPIE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY D VRVVS+     G  S   CGGTHV +TG IM   I+SE+ + 
Sbjct: 645 EAKKTGAAALFGEKYGDIVRVVSM-----GDFSIEFCGGTHVKNTGNIMAFKILSETGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +   Q++KL   A  LK +  N+  +V  +  E + L+      
Sbjct: 700 AGVRRIEALTSKGLLDYYSAQEKKLHETAKLLKATPENIEEKVSHLMNENKVLKGEVESL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + +        ++  V F++  +  VD   L+ + D L++K+  G+I+L  +  
Sbjct: 760 KSKLAKDAMGDVMNQVEEVKGVKFLATSLEGVDMNGLRDLGDQLKEKLGEGVILLASV-N 818

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S++   T+  +    +A +L +  AK++GGGGG GRP+MAQ+GG N    + A+  
Sbjct: 819 DGKVSLMATATDGAMKQGAHAGNLIKAVAKLVGGGGG-GRPNMAQAGGKNPAGVEDALKA 877

Query: 892 VASFLK 897
               L+
Sbjct: 878 AKEALE 883


>gi|89256431|ref|YP_513793.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314869|ref|YP_763592.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502533|ref|YP_001428598.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010686|ref|ZP_02275617.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367771|ref|ZP_04983792.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|122325116|sp|Q0BLS9|SYA_FRATO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122500687|sp|Q2A3A9|SYA_FRATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830095|sp|A7NCD9|SYA_FRATF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89144262|emb|CAJ79545.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129768|gb|ABI82955.1| alanine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253582|gb|EBA52676.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253136|gb|ABU61642.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 865

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 533/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLL+ AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|254283834|ref|ZP_04958802.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219680037|gb|EED36386.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/902 (41%), Positives = 525/902 (58%), Gaps = 46/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F+   H  + SSSL+P +DPTL+FTN+GM  FK  F G E   Y   
Sbjct: 1   MKTAEIREAFLSYFESQQHTRVASSSLVPHDDPTLLFTNAGMNQFKETFLGLEVRDYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW  LT+   L 
Sbjct: 61  TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQFAWTFLTEVLGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITV+  D+EA  +W    G+  +++ R+   DNFW M +TGPCGP SEIF+D G 
Sbjct: 121 KARLWITVHISDDEAAAIWIDEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGA 179

Query: 182 CIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGG PGS ++  +RYIEIWNLVFMQF +        LP  S+DTGMGLER+A VLQ  
Sbjct: 180 DVPGGPPGSEDDDLDRYIEIWNLVFMQFNRDADGTLHPLPAPSVDTGMGLERIAAVLQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+IDLF+ LI A+    G+    +   + RVI DHLRS  FL+ADG+LP NEGRGYV
Sbjct: 240 HSNYEIDLFQALIAATAARLGVTDLEHK--SLRVIADHLRSCCFLVADGVLPGNEGRGYV 297

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ +   LG   P    L+P L  +MG AYPEL  ++  I   L +E+++F +
Sbjct: 298 LRRIIRRAIRHGSKLGADGPFFSALVPELVAQMGDAYPELRDSESRIASALANEEDQFAR 357

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           TLD GL +LDG L+ L    ++ G++ F+LYDT+G P+D+  DI   RG   +D+  +  
Sbjct: 358 TLDNGLSILDGELAALS-GTVIPGELVFRLYDTYGFPVDLTNDIARERGFT-LDLDGYEA 415

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           A++EQR R++        G+ +  + +     G T+F GYD                   
Sbjct: 416 AMDEQRKRSQE------GGSFKVDYSNTVALEGETEFTGYDS------------------ 451

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    + V A+++ G+ V     G    VV ++TPFY E+GGQ+GDTG    + ++
Sbjct: 452 -----GVSEATVMALLKDGDAVSTLEEGDDGIVVLNRTPFYGESGGQVGDTGFLSANDVK 506

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D  K A+G  +HH  +  G L T+ S+   ID   R+Q+ +NHSATHLLH AL  +
Sbjct: 507 AEVRDTTK-AQGHHLHHVKILSGTLATDASVRAEIDVSVRQQIRLNHSATHLLHAALRQV 565

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD ++ KP++  EL +I D VN+ I  N PV T  M+ + A+
Sbjct: 566 LGEHVTQKGSLVDSQRLRFDFSNEKPVSKTELSTISDIVNEQIRGNTPVTTENMSMDAAM 625

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+++        S  LCGGTHV  TG+I +L IV+ES + AG+
Sbjct: 626 DAGAMALFGEKYGDSVRVLTMG---NDRFSVELCGGTHVERTGDIGVLKIVAESGVAAGV 682

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG RA +     + +L ++   LK     VV +V  +  E R L+   A+ K +
Sbjct: 683 RRIEAVTGARALAAFAAGESQLDAVCEALKTRADTVVDKVTALRSEARDLEKEVARLKQK 742

Query: 781 LNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L              +  +  ++  I   D   L+  +D  + K+   +++L  +  E K
Sbjct: 743 LASASGGDLTADAVDVGGIKVLAATIDGADVATLRETLDQCKNKLGDAVVLLAAVEGE-K 801

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S++  V++ L  +  A DL R  A  LGG GG GRP MAQ GG +       +A + ++
Sbjct: 802 ISLVAGVSKALTKQVKAGDLMREFAGRLGGKGG-GRPDMAQGGGSDVAALPAVLADLPNW 860

Query: 896 LK 897
           ++
Sbjct: 861 VQ 862


>gi|116872933|ref|YP_849714.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123461085|sp|A0AIV3|SYA_LISW6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116741811|emb|CAK20935.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 879

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 513/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  +W++  GLS + I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTIWREKIGLSEEHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PTFGDDTSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY  N  N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHNQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      ++F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTAKSEFVGYNATEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  I+Q   +V+E  SG+  +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYIIQDDALVDEVASGKTAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHTANLLKATTKEAPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATKC-GGNGGGRPDMAQAGGKNPAELA 864

Query: 887 QAIAGVASFLKK 898
            A+  V++ +K+
Sbjct: 865 TALDYVSTCVKE 876


>gi|30022464|ref|NP_834095.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|206969900|ref|ZP_03230854.1| alanyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|229081653|ref|ZP_04214148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229111861|ref|ZP_04241407.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129669|ref|ZP_04258637.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229180664|ref|ZP_04308004.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|296504879|ref|YP_003666579.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|33301672|sp|Q817Z0|SYA_BACCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29898022|gb|AAP11296.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|206735588|gb|EDZ52756.1| alanyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228602809|gb|EEK60290.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228653786|gb|EEL09656.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671617|gb|EEL26915.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701657|gb|EEL54148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|296325931|gb|ADH08859.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 880

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|218231748|ref|YP_002369198.1| alanyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218159705|gb|ACK59697.1| alanine--tRNA ligase [Bacillus cereus B4264]
          Length = 880

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229071897|ref|ZP_04205108.1| Alanyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228711193|gb|EEL63157.1| Alanyl-tRNA synthetase [Bacillus cereus F65185]
          Length = 880

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVA--- 467

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                               + S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 468 --------------------IESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228960660|ref|ZP_04122305.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799024|gb|EEM45996.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 880

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229192600|ref|ZP_04319561.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228590907|gb|EEK48765.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 880

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVA--- 467

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 468 --------------------AESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|71066015|ref|YP_264742.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|83305857|sp|Q4FRQ0|SYA_PSYA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71039000|gb|AAZ19308.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4]
          Length = 890

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/913 (40%), Positives = 527/913 (57%), Gaps = 54/913 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  F++FF    H  + SSSLIP NDPTL+FTN+GM  FK  F G E   Y    T
Sbjct: 7   SADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVT 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I   W+ LT  +   +D
Sbjct: 67  SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAID 126

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RLY+T+Y+ D+EAF +W K  G+ +++IIRI  N       DNFW+M +TGPCGPC+E
Sbjct: 127 KNRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTE 186

Query: 175 IFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +F+D G  I GGLPG   E+G+RYIEIWN VFMQF +Q       LP  S+DTGMGLER+
Sbjct: 187 VFYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGTMLPLPAPSVDTGMGLERI 246

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           + ++Q    NY+IDLF HL+ A+ ++  ++ E     + +VI DH+R+ SFLIADG+ P+
Sbjct: 247 SAIMQGVHGNYEIDLFVHLMDAAAEI--LEIENQQQSSLKVIADHIRAVSFLIADGVTPS 304

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +   LG        ++  L  EMG AYPEL   + +IE T++ 
Sbjct: 305 NEGRGYVLRRVIRRAVRHGNKLGADSDFFYKMVAPLVAEMGIAYPELKDKQSVIENTIQK 364

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+ +F KTL +GL LL   L  L   + L+G+ AFKLYDT+G P+D+  DI   RG+  I
Sbjct: 365 EEAQFAKTLAQGLRLLASELEGLQDGDTLSGEAAFKLYDTYGFPVDLTADITRERGI-VI 423

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F++ ++ QR RAR       +G  +  + S+ +    T FIGY+ L          
Sbjct: 424 DEAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLEQEGVA---- 473

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                             + A+ Q G   +    G +  VV D+TPFYAE GGQ+G+ G 
Sbjct: 474 ------------------IDALYQDGNPADSLTEGMEGVVVLDRTPFYAEGGGQVGELGE 515

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    + D +K  + I  H+ +V  G ++T+ +    +    R   + NHSATHLL
Sbjct: 516 IRTATGVFDVQDTKKSGQAII-HYGVVTMGEIKTKQTADAQVLSSIRAASAKNHSATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG  V+Q GS ++ + LRFD ++ KP++ AE+  IE  VN+ I  N P     
Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSPAEIMRIERLVNEQIQANTPTRIEN 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVV-----SVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           M  ++AI  GA AL G KY + VRV+     S+        S  LCGG HV  TG+I +L
Sbjct: 635 MPIDEAIKQGAMALFGEKYGNDVRVLTMGTDSIVDGQRMPFSIELCGGLHVQRTGDIGVL 694

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AGIRRIEA+T   A  ++   +++L  LAS LKV +  V  RV  + ++ R
Sbjct: 695 KITSESGIAAGIRRIEAVTAMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L+    + + ++              IA +  +   +S VD K ++++MD ++ K+   
Sbjct: 755 DLEKQLERLEQKIASAQAANLLDEVQTIAGIPLLISTLSGVDGKSIRTLMDDIKSKLPDS 814

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L+G  K+++ ++   V + + DR  A D+ R  A  LGG GG G+P  AQ G P  N
Sbjct: 815 VIVLIG-DKDEQLALAANVAKSVTDRIKAGDIIRYLAGELGGKGG-GKPDYAQGGAPKSN 872

Query: 884 KADQAIAGVASFL 896
            +   IA + +++
Sbjct: 873 NSAAVIAALPAWV 885


>gi|254724685|ref|ZP_05186468.1| alanyl-tRNA synthetase [Bacillus anthracis str. A1055]
          Length = 880

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D GC + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|254369401|ref|ZP_04985413.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122351|gb|EDO66491.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 865

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 532/900 (59%), Gaps = 45/900 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK  +  
Sbjct: 1   MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L
Sbjct: 61  AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L++T+Y  D+EAF +W K  GL+ ++II I ++DNFWSM +TGPCGPC+EIF+D G
Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIHIDSSDNFWSMGDTGPCGPCTEIFYDHG 180

Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ 
Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGY
Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F 
Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KT++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F 
Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             ++ Q+ R++        G     + SL      ++F GY  L                
Sbjct: 417 AQMQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL---------------- 454

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G 
Sbjct: 455 -------IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLL+ AL  
Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A
Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            + GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G
Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K 
Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741

Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +L   +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K 
Sbjct: 742 ELLSGSSNDIKETSIGDIKVVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKV 800

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 859


>gi|239827827|ref|YP_002950451.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|239808120|gb|ACS25185.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 877

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/912 (39%), Positives = 527/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRKMFLDFFKEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPDRLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EEF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ    N++ DLF  +I+A+EQ++G KY  +    V  +VI DH+R+ +F I DG LP+
Sbjct: 237 ILQGVPTNFETDLFMPIIRATEQISGEKYGVDKEKDVAFKVIADHIRAVTFAIGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I++ +++
Sbjct: 297 NEGRGYVLRRLLRRAVRYAKQLHIERPFMYELVPVVGEIMNDFYPEVKEKAAFIQKVIKN 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    +    I++G+  F+LYDT+G P+++ ++     G+ 
Sbjct: 357 EEERFHETLHEGLAILASVIQKEKERGSNIISGEDVFRLYDTYGFPVELTEEYAHEEGME 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    ++F+GYD L        
Sbjct: 417 -VDHDGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKTESEFVGYDQL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V  IV+ G++V E   G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 466 ---------------HAQSTVAVIVKDGQLVNEVKEGEEAQIILDVTPFYAESGGQIADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +  +  + DVQK   G  +HH IVE+G LR   +    ID   R  +  NH+ATH
Sbjct: 511 GWIENETTKAFVKDVQKAPNGQHLHHIIVEKGTLRKGETYTAQIDEAKRASIIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++PV  
Sbjct: 571 LLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIPVEI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                 +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 631 FYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+ +A  LK +   +V R++ +  E R+LQ
Sbjct: 686 SESGIGAGTRRIEAVTGEAAYRFMNEQITLLQEVAQKLKTNPKEIVNRIDALMNEIRQLQ 745

Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
             +     +L   + +   +K+ +VN +  + S+V   D   L++++D L++K+ S II+
Sbjct: 746 RENESLAARLGNMEAANLVNKVKEVNGIPVLASKVNANDMNHLRTMVDELKQKLGSAIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  +  E K +++  +T DL+++ ++A  L +  A   GGGGG GR  MAQ+GG + +K 
Sbjct: 806 LAAVQGE-KVNLIAGITNDLIEKGYHAGKLIKEVAVRCGGGGG-GRADMAQAGGKDPSKV 863

Query: 886 DQAIAGVASFLK 897
            +A+  V  ++K
Sbjct: 864 GEALQYVEQWIK 875


>gi|197301771|ref|ZP_03166841.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC
           29176]
 gi|197299211|gb|EDY33741.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC
           29176]
          Length = 879

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/907 (38%), Positives = 506/907 (55%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLVMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+ED+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEEDDEAFDIWNKKMGIPAERIFRFGKEDNFWEHGS-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF          L + +IDTGMGLER+A ++Q+  
Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L     +++G +Y  ++   V+ RV+ DH+RS +F+I+DGILP+N GRGY
Sbjct: 241 SMFDIDTMKALRDHVCRLSGKQYGTDHETDVSLRVVTDHVRSVTFMISDGILPSNSGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     ++ L   +       YPEL + K  I   +  E+  F 
Sbjct: 301 VLRRLLRRACRHGKLLGIEGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K   ++L+G+ AF+LYDT+G P+D+  +IL  +GL   D   
Sbjct: 361 KTIDQGLAILADMEAEMEKKGEKVLSGENAFRLYDTYGFPIDLTSEILEEKGLTY-DEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A EEQR+++            E   +   +    T+F+GYD L              
Sbjct: 420 FKKAQEEQRAKSEGTFGTHSYTGKEVSVYDELDAEIGTEFVGYDHL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V A+  + EIV+    G+K  ++ +QTPFYA  GGQ  D G     
Sbjct: 466 ---------TFDSKVSALTTEDEIVDALSDGEKGTIIVEQTPFYATMGGQEADKGVIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D    A     H   V +G+++   ++ L ++ +NR     NHSATHLL  AL
Sbjct: 517 EGEFVVEDCIHLAGTKVGHIGHVTKGMIKIGDTVTLEVNAKNRALTERNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +  D LRFD TH   +T  ELK +E+ VN+ I   L VVT+ +  E
Sbjct: 577 RTVLGSHVEQAGSFVNEDRLRFDFTHFSAVTPEELKKVEEIVNEQIQNALEVVTKNLPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV     D G  S   CGGTHV +T EIM L I+SES + 
Sbjct: 637 EARKTGAQALFGEKYGDVVRVV-----DMGGFSVEFCGGTHVKNTSEIMALKIISESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T      +    +  LK  A  +K S  N+  ++  +  E + L+      
Sbjct: 692 AGVRRIEALTSDGLMKYYAEMEHLLKEAAQLIKASPENLAEKITHLQAENKALKGEVDSL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E          ++  V  ++  +  VD  EL+ + D  ++K+  G+++L     
Sbjct: 752 KSKMAQEAAGNVLDRVKEVKGVKLLAAQLDGVDMNELRELGDQFKEKLGEGVVVLAS-GN 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S++  VT   +    +A +L +  A ++GGGGG GRP+MAQ+GG N     QA+  
Sbjct: 811 EGKVSLMATVTNGAMKQGAHAGNLVKAIAGLVGGGGG-GRPNMAQAGGKNPAGIAQALEK 869

Query: 892 VASFLKK 898
               L +
Sbjct: 870 AEEVLAE 876


>gi|228902916|ref|ZP_04067057.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228967463|ref|ZP_04128492.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792240|gb|EEM39813.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856700|gb|EEN01219.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 880

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229032038|ref|ZP_04188021.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|228729283|gb|EEL80277.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 880

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQEGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ G+  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGKYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|49481702|ref|YP_038439.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|59798537|sp|Q6HDD7|SYA_BACHK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49333258|gb|AAT63904.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 880

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ + TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLNVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRGSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|221066868|ref|ZP_03542973.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711891|gb|EED67259.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 874

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/909 (41%), Positives = 535/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+F+   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+  W+LLTK F L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L  TVY ED+EA+ +WK + GL A++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T  +       + +VI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRETHTEDLST--PSLKVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I   L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQQAHITSVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+  ARA           K+  +L+       F+GYD L           
Sbjct: 422 EAGFNAAMQHQKETARAAGK-------FKMDRALEYTGQGNTFVGYDKLA---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S+ + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 465 -------------ESAKIVALYADGVSVSELKAGQNGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D   R     NHS TH++H
Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  +  N P   R+M
Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTPTDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V ES
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIE ITG+ A ++L   +  +   A+  K     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPAAELTNRIGGALDQIKALEKEI 745

Query: 775 A--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D    + ADVN +  +   +   D+K L+  MD L+ K+ + +I+L  
Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT+    +  A +L    A+ +GG GG G+P MA +GG +      A+
Sbjct: 806 VDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQVGGKGG-GKPDMAMAGGTDAAAVPAAL 863

Query: 890 AGVASFLKK 898
           A V +++ +
Sbjct: 864 ASVQAWVAE 872


>gi|42783517|ref|NP_980764.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|48428502|sp|P61697|SYA_BACC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42739446|gb|AAS43372.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 880

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K+QS
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|327439562|dbj|BAK15927.1| alanyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 890

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/924 (36%), Positives = 502/924 (54%), Gaps = 69/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L FF++ GH + PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 6   MTGSEIRRLYLNFFKEKGHHIEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRI 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ +I  AW+ LT  K   
Sbjct: 66  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKESIHYAWEFLTDPKWMG 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D  +L +T++ ED+EA+ +W    G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 122 FDPEKLSVTIHPEDQEAYDVWHNEIGIPKERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 178

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           GE    G P        E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 179 GEEYGVGAPEEEMYTGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 238

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--------------RVIVDHLRS 281
           V+Q    N+D DLF  +I+ +E      Y+  + V+               +VI DH+R+
Sbjct: 239 VVQNVPTNFDTDLFMPIIEKTETFANRTYKRPHEVDLNEIFGSTEDVNTPFKVIADHIRT 298

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YP++ 
Sbjct: 299 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKKIGIEKPFMFELVPTVGEIMHDFYPQVK 358

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           + +  I+  +++E+ RF +TLD GL + + V        + ++ G  AF+LYDT G P++
Sbjct: 359 EKEAFIQRVIKNEEVRFHETLDGGLAIFNEVAESQKAKGETVIPGADAFRLYDTFGFPIE 418

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F  ++E+QR RAR     + S   +    S            
Sbjct: 419 LTEEYAEEVGMT-VDQEGFEASMEQQRERARNARADVDSMQVQNEVLS------------ 465

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                          +  Q   I      S+ V AIV  G+    A  G++  V+  +TP
Sbjct: 466 --------------NLTQQSTFIYDALEASAKVAAIVVNGQETSTASEGEEALVILSETP 511

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ DTG    DG    + DVQK   G  +H  +VE G +         ++   
Sbjct: 512 FYAEMGGQIADTGIIKADGFTAIVKDVQKAPNGQPLHTVVVESGEMNVGDIATAKVEEAK 571

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R+ +  NH+ATHL+H AL  +LG HV+Q GS + PD LRFD +H    T  EL  +E  V
Sbjct: 572 RKLILKNHTATHLMHRALKDVLGDHVAQAGSYVGPDRLRFDFSHFGAATKEELAQVERAV 631

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ I +++ VV + M+ + A A GA AL G KY D VRVV+V       +S  LCGG HV
Sbjct: 632 NEKIWEDIEVVIQEMDIDSAKAMGAMALFGEKYGDVVRVVAV-----SDYSIELCGGLHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S + EI +  IVSES I AG RRIEA+TG+ A   +  ++  L   A  LK +  +V  R
Sbjct: 687 SRSSEIGIFKIVSESGIGAGTRRIEAVTGKAAYEAIKEEEAILNEAAGLLKSNAKDVATR 746

Query: 760 VEEIWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           V  +  +Y++LQ  +          Q      +  KI DV  ++  +   D+ +L+ +MD
Sbjct: 747 VATLQADYKELQRENDSLSQKIANAQAGAVLDAAQKIGDVTVLATRVEAKDNNQLRQMMD 806

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L++K++S +I+L  +  + K  +   VT+D++   ++A ++ +  A+   GG GGGRP 
Sbjct: 807 DLKEKMESAVIVLGAVDGD-KVMLCAGVTKDIVGGNYHAGNIVKQVAEAC-GGKGGGRPD 864

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MA +G  + +K + A+  V   +K
Sbjct: 865 MAMAGAKDASKLEDALNAVYEHVK 888


>gi|229918435|ref|YP_002887081.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|229469864|gb|ACQ71636.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 880

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/911 (39%), Positives = 530/911 (58%), Gaps = 57/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+  GH + PS+SL+P  DPTL++ NSG+   K  F G+  P    + 
Sbjct: 8   TGAQIRQMYLDFFKSKGHSVEPSASLVPVEDPTLLWINSGVATLKKYFDGRVIPANPRIV 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI   W+LLT  + + L
Sbjct: 68  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGEYFREEAITWGWELLTSDEWYGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +T++ +DEE+ ++W  + G+ AD+II +   DNFW + E GP GP +EIFFD+G
Sbjct: 124 DPDRLSVTIHPDDEESKQIWMNL-GMPADRIIPL--EDNFWEIGE-GPSGPNTEIFFDRG 179

Query: 181 ECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWN+VF Q+          LP+ +IDTGMGLERMA+V
Sbjct: 180 PAFGDDPTDPELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASV 239

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+   N+D DLF  +I+ +E+++G  Y  + +  V  +VI DH+R+ SF I DG LP+N
Sbjct: 240 LQDVPTNFDTDLFMPIIRETEKISGDVYRQDSSKDVAFKVIADHIRTVSFAIGDGALPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA++LG   P M  L+  +   M   YP++ + K  I++ +++E
Sbjct: 300 EGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDVVGDIMVDFYPQVNEKKDFIKKVIKNE 359

Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ V          I++G  AF+LYDT+G PL++  +      +  
Sbjct: 360 EERFHETLNDGLAILNEVAKAQKAAGSNIISGQDAFRLYDTYGFPLELTIEYAEDHQMT- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+ EQR RAR     + S   +     L +    + F+GY+ L  +      
Sbjct: 419 VDEDGFKEAMNEQRERARQARADVESMQIQS--GVLADITMPSTFLGYNNLETN------ 470

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + +++  GE+ +   +G++ +V+ DQTPFYAE+GGQ+GD G
Sbjct: 471 -----------------AKIISLIHNGELADVVAAGEEAQVILDQTPFYAESGGQIGDKG 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+   L++ DV K   G  +H   VE G+ + E+++  ++D  +R+ +  NH+ATHL
Sbjct: 514 QIVGEDFLLRVKDVSKAPNGQNLHTVTVESGVAKAEVAVTASVDQASRQAIVKNHTATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS +TPD LRFD +H   +TS EL+SIE  VN+ I  ++ V   
Sbjct: 574 LHRALKDTLGEHVNQAGSLVTPDRLRFDFSHFGQVTSEELQSIERQVNEKIWASIGVDIE 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            MN  DA A GA AL G KY D VRVVS      G +S  LCGG HVS+T EI L  I+S
Sbjct: 634 EMNIADAKAKGAMALFGEKYGDVVRVVS-----AGDYSVELCGGIHVSNTAEIGLFKILS 688

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG  A   +  Q E L++ A  LK     V  RV+ +  E ++++ 
Sbjct: 689 ESGIGAGTRRIEAVTGAGAYEVMNQQIETLEAAAKLLKTKPLEVPARVQALQAEIKEVER 748

Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L   + S        I  V  ++  +   D   L+S++D L+ K+ S +I+L
Sbjct: 749 ASESLKAKLANIEASSLTDAIETIGGVQLIAKRVDGQDMDALRSMVDDLKGKLGSAVIIL 808

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G +  +K +++  VT+DL DR F+A  L +  A   GGGGG GRP MAQ+GG +  K D
Sbjct: 809 -GSANGEKVNLVAGVTKDLNDRGFHAGKLIKEVATRCGGGGG-GRPDMAQAGGRDATKLD 866

Query: 887 QAIAGVASFLK 897
           +A+   + +++
Sbjct: 867 EALKFASHYVE 877


>gi|154502472|ref|ZP_02039532.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149]
 gi|153796868|gb|EDN79288.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149]
          Length = 879

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 510/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEEDEEAFEIWNKKMGIPAERIFRFGKADNFWEHGS-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGHYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++   +Y  +    ++ RVI DH RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTLKALRDHICRLADTEYGKDAQADISIRVITDHTRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + +  E+++F 
Sbjct: 301 VLRRLLRRACRHGRLLGIEGSFIPELAQTVIEGSKDGYPELEEKKDFILKVIAKEEDQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + +  ++   L+G  AFKLYDT+G P+D+ ++IL  +G+  +D   
Sbjct: 361 KTIDQGLGILAEMTAKMEAEQTTTLSGADAFKLYDTYGFPIDLTKEILEEKGM-QVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ ++E QR  ARA          +   +   +    + F+GY+ L              
Sbjct: 420 FHASMEVQRKTARAARGETNYMGADVTVYESIDPSITSTFVGYENLAW------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +    EIVE    GQ+  V  ++TPFYA +GGQ  DTG     
Sbjct: 468 -----------KSPITVLTSDTEIVEALSDGQRGTVFAEETPFYATSGGQEADTGIIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H  +V +G+++T     L +D + R   + NHSATHLL  AL
Sbjct: 517 EGEFKVEDTVKLLGGKIGHVGVVIKGMIKTGDQAELCVDAEKRALSARNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +  D LRFD +H   +T+ EL+ +E+ VN+ I   LPV    M  E
Sbjct: 577 RTVLGTHVEQAGSSVNEDRLRFDFSHFSAMTAEELQKVEEIVNEQIVAGLPVKVENMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV++     G +S   CGGTHV +T EIM   I+SES + 
Sbjct: 637 EARKTGAQALFGEKYGDVVRVVNM-----GDYSIEFCGGTHVKNTNEIMAFKILSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    ++KL   A  LK +  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSKGLIRYYDNLEKKLNEAAKVLKATPDNLAEKIAHLTAENKALHSEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + +        +I  V  ++  +  VD   L+ + D L++K+  G+++L     
Sbjct: 752 KSKLAQDAMGDVMDQVQEIKGVKLLAAEVDGVDMNGLRDLGDQLKEKLGEGVVVLAS-GN 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S+++  T+  +    +A +L +  A ++GGGGG GRP+MAQ+GG N     +A+  
Sbjct: 811 DGKVSLMVTATDAAMKQGAHAGNLVKAIAGLVGGGGG-GRPNMAQAGGKNPAGIQEALKK 869

Query: 892 VASFLK 897
            A  L+
Sbjct: 870 AAEALE 875


>gi|229048096|ref|ZP_04193669.1| Alanyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228723251|gb|EEL74623.1| Alanyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 880

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K++  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKINPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|324328292|gb|ADY23552.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 880

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 534/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTAVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K+QS
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQS 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|295109896|emb|CBL23849.1| alanyl-tRNA synthetase [Ruminococcus obeum A2-162]
          Length = 879

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/907 (39%), Positives = 509/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG E P    VTT
Sbjct: 6   VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPRTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFNIWNKEVGIPAERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     +++G +YE N  + V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTICALRNLVCEISGKEYEKNYQDDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +     + YPEL + K  I + L +E+ +F 
Sbjct: 301 VLRRLIRRAARHGRLLGIKGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNEENQFN 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   +    ++ L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLRILGDMEEEMKTAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGYT-IDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+EEQR +AR           +   +   +    T+F GYD L              
Sbjct: 420 FQKAMEEQRVKARTSREVTNYMGADATVYDEIDVNVTTEFEGYDNLIYD----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + +IV   + GQK  V   +TPFYA  GGQ GD G     
Sbjct: 469 ------------SEITVLTTEKDIVTSLMEGQKGTVFVKETPFYATMGGQEGDCGVIETA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             +  + D  K   G F H   +E G+L T  ++ L ++ Q RR    NHSATHLL  AL
Sbjct: 517 NGKFVVEDTIKLRGGKFGHVGYMESGMLSTGETVSLKVNEQARRDTEKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H + +T  E+   E  VN  I   LPV T IM+ E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTPDEIVEAEALVNKEIQAALPVETNIMDIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV +T  IML  IVSE+ + 
Sbjct: 637 EAKKSGAMALFGEKYDQKVRVVSM-----GDFSRELCGGTHVRNTSSIMLFKIVSEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG     +   Q+  L   A  LK     V  ++  +  + + LQ  +   
Sbjct: 692 AGVRRIEALTGNGVIEYYKKQEAMLHEAAKALKAQPAEVAEKIAHLQADVKALQSENESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L    L         +  V  ++  +  +D   L+ + D L++KI  G+++L  +  
Sbjct: 752 KSKLAQGSLGDVMNQIVDVKGVKLLASRVEGIDMNGLRDLGDQLKEKIGEGVVVLAAV-N 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K ++L + T+       +A +L +  A ++GGGGG GRP+MAQ+GG N  KA +AI  
Sbjct: 811 GGKVNLLAMATDAAQKAGAHAGNLIKGVAAIVGGGGG-GRPNMAQAGGKNPEKAQEAIDA 869

Query: 892 VASFLKK 898
            A  L++
Sbjct: 870 AAGILEQ 876


>gi|228910224|ref|ZP_04074042.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228849388|gb|EEM94224.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 880

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229158004|ref|ZP_04286075.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625457|gb|EEK82213.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 880

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229152592|ref|ZP_04280781.1| Alanyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228630853|gb|EEK87493.1| Alanyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 880

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  ++E G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVIEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228948102|ref|ZP_04110386.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123929|ref|ZP_04253121.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228659231|gb|EEL14879.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228811460|gb|EEM57797.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 880

 Score =  895 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADCGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|301055897|ref|YP_003794108.1| alanyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378066|gb|ADK06970.1| alanyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 880

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G+L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGMLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228941556|ref|ZP_04104105.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974486|ref|ZP_04135053.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981080|ref|ZP_04141381.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778621|gb|EEM26887.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785203|gb|EEM33215.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818112|gb|EEM64188.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942170|gb|AEA18066.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 880

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               ++  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFNKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLIGQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|218899557|ref|YP_002447968.1| alanyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542758|gb|ACK95152.1| alanyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 880

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V++GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKKGEYTDSLQAGEEGQLILDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H   VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     +  +A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229019610|ref|ZP_04176423.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229025848|ref|ZP_04182246.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735459|gb|EEL86056.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741690|gb|EEL91877.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 880

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GGYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +S + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASVS-DDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|118479549|ref|YP_896700.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|196034339|ref|ZP_03101748.1| alanyl-tRNA synthetase [Bacillus cereus W]
 gi|196044886|ref|ZP_03112120.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218905583|ref|YP_002453417.1| alanyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866370|ref|YP_002751748.1| alanyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|205829983|sp|A0RJ00|SYA_BACAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118418774|gb|ABK87193.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|195992881|gb|EDX56840.1| alanyl-tRNA synthetase [Bacillus cereus W]
 gi|196024374|gb|EDX63047.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|218536398|gb|ACK88796.1| alanyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787137|gb|ACO27354.1| alanine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 880

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229163337|ref|ZP_04291289.1| Alanyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228620118|gb|EEK76992.1| Alanyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 880

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 530/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ ED+EAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY        +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRDGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQAGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNSKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|312135147|ref|YP_004002485.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311775198|gb|ADQ04685.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 879

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 1   MATDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 117 RERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 175

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 176 DKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R   F+I DGILP+NEGR
Sbjct: 236 VDSLFDIDIVKAIRDKVCEVTSYEYRKDTEKDVSVRVITDHIRGIVFMIGDGILPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     ++YPEL+Q    I++ L +E+ R
Sbjct: 296 GYVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNSYPELVQKVEYIKKVLYNEESR 355

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AFK+YDT+G PLD+ ++I   +G+  +D 
Sbjct: 356 FNQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQ 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GY+ L+           
Sbjct: 415 ERFDELMQQQKERARAAQKELENVGWKDINIVIDEDI-ETVFVGYETLK----------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  I  + E V  A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 463 ------------QESKILKIFMESEEVAYAKEEDVCFVILDKTPFYAESGGQIADKGILE 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S+V  +D   R     NH+ATHLLH 
Sbjct: 511 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEDLRFATMKNHTATHLLHS 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS ++PD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 571 ALRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +        S  LCGGTHV +TG+I +  I+SESS
Sbjct: 631 LDSALRMGAIALFDEKYSNLVRVIKI-----DDFSMELCGGTHVDNTGQIGMFKIISESS 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    +V ++E++  + + L+   
Sbjct: 686 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIVSKIEQLENKIKNLENEV 745

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +L           +   + +     D   +K + D ++++  S  I+L  
Sbjct: 746 EKYKLLVVENELSLLFSKAIDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 804

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + R    V+ GG GGGRP  AQ GG +  K D A
Sbjct: 805 LEQGNKVTVLMSCSKEAVKKGVDCGKVVREVCSVV-GGKGGGRPDFAQGGGNDILKIDIA 863

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 864 VQTAENILK 872


>gi|157273379|gb|ABV27278.1| alanyl-tRNA synthetase [Candidatus Chloracidobacterium
           thermophilum]
          Length = 880

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/907 (40%), Positives = 524/907 (57%), Gaps = 44/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL++F ++GH ++ SS ++P +D TL+FTN+GM  FK++FTG+E   Y  
Sbjct: 1   MLTGHDIRRRFLDYFARHGHRIVKSSPVLPPDD-TLLFTNAGMNQFKDVFTGRETREYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+RAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFKE AI  AW+LL +EF L
Sbjct: 60  AASSQKCIRAGGKHNDLDEVGKTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLLREFGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+ TVY++D+EAF LWKK+ G  AD+I+R    +NFW M ETGPCGPCSEI +  G
Sbjct: 120 PLERLWFTVYEDDDEAFALWKKV-GAPADRILRFGKKENFWQMGETGPCGPCSEIHYFLG 178

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + +    P   +  G+  IEIWNLVFMQFE+        LPK S+DTG GLER+A+VLQ 
Sbjct: 179 DDLADNRPEHVNGPGDTTIEIWNLVFMQFERFADGTLKPLPKPSVDTGAGLERLASVLQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +NYD DL   +++      G  Y  +  + V+ R+I DH R+++F IADGI P N GR
Sbjct: 239 KKSNYDTDLIFPIVEHIAARAGKPYHYDSPDGVSMRIIADHARATAFSIADGIYPGNTGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            YVLR+IMRRA+ + R LG     +  +   +   M +A+PEL     +I   + +E++ 
Sbjct: 299 NYVLRKIMRRAIWHGRRLGIENLFLHDITAFVVAHMAAAFPELQTQAEVITRVVTTEEKL 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL  G   L+       +  +++G  AF LY T+GLPLD++  I   RGL  +D   
Sbjct: 359 FSATLAAGRKRLEEAFRRA-EHGVVSGADAFDLYQTYGLPLDLIAYIAEQRGLR-VDEAG 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  AL E+R RAR    G  +      + +  +    T F GYD L              
Sbjct: 417 FEAALTEERIRARESWKGGTAKAVAPAYQAALD-GRPTIFRGYDHLSLPDLR-------- 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V+A+++QGE+VE   +G+  EV+ D+TPFYAEAGGQ+GDTG    +
Sbjct: 468 --------------VRALIRQGELVEVLRAGEDGEVILDETPFYAEAGGQVGDTGLLENE 513

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++TD      G+ VH   V RG +RT   +  T+D   RR+  +NHSATHLLH AL
Sbjct: 514 AVTMRVTDTVAPVTGLIVHCVKVLRGAVRTHDRVTATVDADRRRRTMLNHSATHLLHAAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS + PD LRFD TH   +++ E+  +E  VN  I +N P+  R M  +
Sbjct: 574 REVLGAHVKQAGSEVAPDKLRFDFTHYAALSADEIAEVERLVNAQIRRNAPLAKREMPLD 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            AIA+GA AL G KY D VRVV V        S  LCGGTHV++TG+I L  I+SESSI 
Sbjct: 634 AAIAAGAIALFGEKYGDVVRVVEVPG-----FSIELCGGTHVTATGDIGLFKIISESSIA 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHA 775
           AG+RRI A+TG+ A       +  L +LA+  ++      +  +VE++    R+ +    
Sbjct: 689 AGVRRIIAVTGEAAFERFQADEAILSNLAATFRLGGEVSEIPAQVEKLQASLRQAEREIE 748

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             +L+L  +           I DV  ++  ++E+D   ++ + + L  K+   ++++ G+
Sbjct: 749 SLRLKLAQQRAETALAEARTIGDVRVLALEVTELDKSGVRQLAEYLLGKLGQAVVVV-GL 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E+K S+ + V + L +R  A  L R  A ++ GG GGGR   A++GG +  +  +A+ 
Sbjct: 808 RSEEKVSLAVRVADPLTNRLQANRLVRELAAMV-GGSGGGRADYAEAGGKDPARLPEALH 866

Query: 891 GVASFLK 897
              + ++
Sbjct: 867 ATPAIVE 873


>gi|47566576|ref|ZP_00237398.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47556606|gb|EAL14938.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 880

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  ++K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDEKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|253578839|ref|ZP_04856110.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849782|gb|EES77741.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 879

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/906 (39%), Positives = 519/906 (57%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG E P    V+T
Sbjct: 6   VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPRTRVST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ AD+I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFDIWNKEIGIPADRIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     +++G +YE N  + V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTICALRNLVCEISGKEYEKNYNDDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +     + YPEL + K  I + L +E+ +F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNEENQFN 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   +    ++ L+G+ AFKLYDT+G P+D+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLRILGEMEDEMKAAGEKTLSGENAFKLYDTYGFPMDLTKEILEEKGY-DIDEAG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +EEQR++AR+          +   +   +    T+F+GYD L              
Sbjct: 420 FQKCMEEQRNKARSAREVTNYMGADATVYDDIDVNVTTEFVGYDHL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + EIV   + GQK  V  +QTPFYA  GGQ+GDTG     
Sbjct: 466 ---------TFDSKVTVLTTETEIVNSLMEGQKGTVFTEQTPFYATMGGQVGDTGVIETA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             +  + D  K   G F H   +E G++ T  ++ L +D   RR    NHSATHLL  AL
Sbjct: 517 NGKFVVEDTIKLRGGKFGHVGHMESGMISTGETVSLKVDEAARRDTEKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +TPD LRFD  H + +T+ E+  +E  VN  I   L V T +M+ E
Sbjct: 577 KTVLGNHVEQKGSLVTPDRLRFDFAHFQAMTADEIAQVEALVNKEIQAGLEVRTDVMDVE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA AL G KY+ +VRVVS+     G  S  LCGGTHV++TG IML  IVSES I 
Sbjct: 637 EAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVANTGNIMLFKIVSESGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG     +   Q+E L   A  LK +   +V ++  +  E + L   +   
Sbjct: 692 AGVRRIEALTGNGVLEYYKKQEELLHEAAKALKANPAEIVEKIGHLQGEVKALSSENESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L    L        ++  V  ++  +  VD   L+ + D L+ K+  G+++L  ++ 
Sbjct: 752 KSKLAQGALGDVMDKVVEVKGVKLLAAKVDGVDMNGLRDLGDQLKGKLGEGVVLLAAVNG 811

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K ++L + T+       +A +L +  A ++GGGGG GRP+MAQ+GG N  KA +A+  
Sbjct: 812 E-KVNLLAMATDAAQKAGAHAGNLIKAVAAIVGGGGG-GRPNMAQAGGKNPAKAQEAVDA 869

Query: 892 VASFLK 897
            A  L+
Sbjct: 870 AAGILE 875


>gi|228993127|ref|ZP_04153049.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228999175|ref|ZP_04158757.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006723|ref|ZP_04164357.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754584|gb|EEM03995.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760792|gb|EEM09756.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|228766586|gb|EEM15227.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 880

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY G      +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRGGDVEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++   +++   ++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTAISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHTGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQSLHKIVVEEGTLTKESAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATH+LH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHILHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  E K ++L  VT+DL++  ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLAAV-NEDKVNILAGVTKDLINQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + D A+A V  ++K
Sbjct: 861 PAQVDDALAFVEEYVK 876


>gi|52141119|ref|YP_085711.1| alanyl-tRNA synthetase [Bacillus cereus E33L]
 gi|196039230|ref|ZP_03106536.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206976027|ref|ZP_03236937.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217961878|ref|YP_002340448.1| alanyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222097831|ref|YP_002531888.1| alanyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228917022|ref|ZP_04080582.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228935709|ref|ZP_04098522.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229141125|ref|ZP_04269667.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|229198515|ref|ZP_04325219.1| Alanyl-tRNA synthetase [Bacillus cereus m1293]
 gi|59798503|sp|Q634F6|SYA_BACCZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51974588|gb|AAU16138.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|196029857|gb|EDX68458.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|206745779|gb|EDZ57176.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217067465|gb|ACJ81715.1| alanyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221241889|gb|ACM14599.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|228585018|gb|EEK43132.1| Alanyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228642403|gb|EEK98692.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|228823947|gb|EEM69766.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228842629|gb|EEM87717.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 880

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228987640|ref|ZP_04147754.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772100|gb|EEM20552.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 880

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQTDELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|228929433|ref|ZP_04092454.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830221|gb|EEM75837.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 880

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ +++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNRLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|229175062|ref|ZP_04302580.1| Alanyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608430|gb|EEK65734.1| Alanyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 880

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVLVVGEVMKDFYPEVVEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQEGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|302871868|ref|YP_003840504.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574727|gb|ADL42518.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 881

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 DKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  N    V+ RVI DH+R   F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRNKVCEVTNYEYGKNAEKDVSVRVITDHIRGIVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AFK+YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   ++E    T F+GY+ L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIEEDI-ETVFVGYETLK----------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  I  + E V  A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 465 ------------QESKILKIFMEDEEVAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S++  +D   R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVIAKVDEGLRFATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS ++ D LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVSADRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++    + L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNSQQTLKQLRSKVKASTDSEILAKIEQLENRIKDLENEV 747

Query: 775 AKRKL---QLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL   +  +  L    +   +   + +     D   +K   D ++++  S  I+L  
Sbjct: 748 EKYKLLVIESEISSLIDKAVNYGEFKLIVNRKETDDMDYVKLFTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + +    VL GG GGGRP  AQ GG +  K D A
Sbjct: 807 LEQGNKVTVLMSCSKEAVKKGVDCGKVVKEICAVL-GGKGGGRPEFAQGGGNDILKIDIA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 VQTAENILK 874


>gi|15613830|ref|NP_242133.1| alanyl-tRNA synthetase [Bacillus halodurans C-125]
 gi|20139935|sp|Q9KDE6|SYA_BACHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10173883|dbj|BAB04986.1| alanyl-tRNA synthetase [Bacillus halodurans C-125]
          Length = 879

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/912 (38%), Positives = 525/912 (57%), Gaps = 57/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH++ PS+SL+P +DP+L++ NSG+   K  F G+  P    +T
Sbjct: 5   TSAQVRQMFLDFFKEKGHDVEPSASLVPHDDPSLLWINSGVATLKKYFDGRVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L +TV+ ED+EA+  WK+  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DKEKLSVTVHPEDDEAYSYWKEKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E +RY+E+WNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 PEYGDQPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N++ DLF  +I+A+E+++G +Y  ++   V+ +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQNVPTNFETDLFMPIIRATEKISGTEYGSHHEADVSFKVIADHIRTVTFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I++ +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGDIMVDFYPEVKEKAAFIQKVVKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ V+     +    ++G   F+LYDT+G P+D+ ++ +  +GL  
Sbjct: 358 EERFHETLNEGLSILEKVIDKAKSEGASTISGSDVFRLYDTYGFPVDLTEEYVEEQGL-Q 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F   +E QR RAR      GS   +     L +    + FIGY  L         
Sbjct: 417 VDLDGFEAEMERQRERARTARQQAGSMQVQDEV--LGQITVDSTFIGYKQL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + ++ IV    + +   +GQ+ +V+  +TPFYAE+GGQ+ D G
Sbjct: 466 --------------STETTIETIVLDKTVADYVGAGQEAKVILKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G      ++DVQK   G  +H  IV+ G L+    +   ++   R  +  NH+ATHL
Sbjct: 512 IIRGANGFAVVSDVQKAPNGQHLHTVIVKEGTLQVNDQVQAIVEETERSGIVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS ++ + LRFD +H   +T  E + IE  VN+ I Q + V   
Sbjct: 572 LHRALKDVLGEHVNQAGSLVSEERLRFDFSHFGQVTDEEKEKIERIVNEKIWQAIKVNIS 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               ++A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IVS
Sbjct: 632 TKTLDEAKAIGAMALFGEKYGDIVRVVEV-----GDYSIELCGGCHVTNTSEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
           ES I AG+RRIEA+TG+ A   +  Q + LK  A+ +K     +V  RVE + ++ R+LQ
Sbjct: 687 ESGIGAGVRRIEAVTGKEAFLFMAKQLDLLKETAATVKAKNVKDVPVRVEALQQQIRELQ 746

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         KI  V  ++  IS  D   L+S++D L+++I S +++
Sbjct: 747 RENESLNAKLGNMEAGSLVNEVQKIEGVPVLAKAISGADMDGLRSIVDKLKQEIPS-VVI 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++G + E K +++  VT+DL+++ ++A  L +  A   GGGGG GRP MAQ+GG    K 
Sbjct: 806 VLGTASEGKVNIVAGVTKDLINKGYHAGKLVKEVATRCGGGGG-GRPDMAQAGGKQPEKL 864

Query: 886 DQAIAGVASFLK 897
             A++ V  ++K
Sbjct: 865 QDALSFVYEYVK 876


>gi|228923140|ref|ZP_04086431.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836519|gb|EEM81869.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 880

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+  +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLIGQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|218132498|ref|ZP_03461302.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992608|gb|EEC58610.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC
           43243]
          Length = 868

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/901 (38%), Positives = 515/901 (57%), Gaps = 48/901 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +L+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MYLDFFESKGHLKMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDASRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +D+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G PG
Sbjct: 117 YVDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHGS-GPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 SS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  + +D+D
Sbjct: 176 CTVGCDCDRYMEVWNNVFSQFNNDGHGNYSDLIQKNIDTGMGLERLAVVVQDVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             + L     ++ G+ Y+ +    V+ RVI DH+RS +F+++DGI+P+NEGRGYVLRR++
Sbjct: 236 TLQALRNKVCEMAGVTYKEDEKTDVSIRVITDHIRSVTFMVSDGIMPSNEGRGYVLRRLL 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  L   +       YPEL + K  I + +  E+++F KT+D+G
Sbjct: 296 RRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELDEKKAFIFKVIDQEEDKFNKTIDQG 355

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L+ + + L K  ++IL+G  AFKLYDT+G PLD+ ++IL  +G+  ID   F  A+E
Sbjct: 356 LGILEQLEADLVKTGNKILSGADAFKLYDTYGFPLDLTKEILEEKGIT-IDEEGFKSAME 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR +AR           +   +   +    + F+GYD L                    
Sbjct: 415 EQRIKARTARKTTNYMGADATVYDEIDPAITSSFVGYDKLTN------------------ 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S V  +  +  +VE    G +  +V D+T FY   GGQ GD G         ++
Sbjct: 457 -----QSKVSVLTTEENVVEALSDGDRGTIVVDETVFYGSMGGQEGDRGVITSPEGEFRV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
                   G   H  ++ +G+++T  ++ LT+D   R     NHSATHLL  AL  +LG+
Sbjct: 512 DTTIHLKGGRIGHVGVMTKGMIKTGDTVTLTVDAPARAATCANHSATHLLQKALRDVLGT 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS + PD LRFD  H + +T  E+ S+E  VN+ IA+ LPVVT IM+ EDA  +G
Sbjct: 572 HVEQKGSYVDPDRLRFDFAHFQAMTPDEIASVESIVNEKIAEALPVVTNIMSLEDAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D+VRVVS+     G  S+ LCGGTHV++T  IML  IVSES + AGIRRI
Sbjct: 632 AMALFGEKYGDKVRVVSM-----GDFSTELCGGTHVANTSNIMLFKIVSESGVAAGIRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG    ++    +  L       K     ++ R+  + +E + L   + K K +L  
Sbjct: 687 EALTGNGVLAYYRNIENTLAEACRTAKTEPSQLIHRIASMNDEIKSLSSENEKLKAKLAN 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           E +     +  +I    F+   +++VD   L+++ D ++ KI SGI++L     + K ++
Sbjct: 747 EAVGDVLANVQEIGSFRFLPVSVADVDMNGLRTLGDNMKDKIGSGIVILASTQGD-KVNI 805

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + + T+D + +  +A +L +  A ++GGGGG GRP+MAQ+GG N    D+ +A  A    
Sbjct: 806 IAMATDDAVAKGAHAGNLIKAVAPIVGGGGG-GRPNMAQAGGKNPAGIDEMLAKAAEVAA 864

Query: 898 K 898
           +
Sbjct: 865 Q 865


>gi|291485146|dbj|BAI86221.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 878

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 519/911 (56%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +        
Sbjct: 417 VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTKAD------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + +  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+GD G
Sbjct: 469 -----------------ANIIVLLQDGQLIEEAYEGESVQIILDETPFYAESGGQIGDKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATHL
Sbjct: 512 YLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IVS
Sbjct: 632 LKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E ++ Q 
Sbjct: 687 ESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKEAQR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +         ++  VN ++  ++  D   L++++D L+ K+ S +I+L
Sbjct: 747 ENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K ++   VT+DL+++  +A  L + +A+V GGGGG GRP MAQ+GG    K +
Sbjct: 807 GAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGGG-GRPDMAQAGGKQPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+A V  ++K
Sbjct: 865 EALASVEDWVK 875


>gi|300119209|ref|ZP_07056906.1| alanyl-tRNA synthetase [Bacillus cereus SJ1]
 gi|298723429|gb|EFI64174.1| alanyl-tRNA synthetase [Bacillus cereus SJ1]
          Length = 880

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHLGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYIK 876


>gi|255284141|ref|ZP_05348696.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255265315|gb|EET58520.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 879

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/906 (39%), Positives = 515/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+FFQ  GH  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   VNELRKMFLDFFQSKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFDIWNKEVGIPAERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RYIE+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYIEVWNNVFTQFENDGNGNYTELQQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  + L     +    +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTIEALRNKVCEFAHTEYKTDEKKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG +   +  L   +       YPEL + K  I + L  E+++F 
Sbjct: 301 VLRRLIRRAARHGRLLGISGKFLSELSATVIEGSKDGYPELEEKKDFIFKVLTQEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L G+ S +  +  + L G  AF LYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLSILSGMESKMEAEGVKTLAGRDAFTLYDTYGFPLDLTKEILEEKGYT-IDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A+EEQR++AR           +   +   +    T+F+GYD L              
Sbjct: 420 FKAAMEEQRTKARNAREVTNYMGADATVYDEIDPSVTTEFVGYDKLEY------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + EI E    G+   +  +QTPFYA  GGQ GDTG     
Sbjct: 468 -----------TSKITVLTTEKEITEAVSDGENATIFVEQTPFYATMGGQEGDTGVIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H   V +G+ +    + L++  + R     NHSATHLL  AL
Sbjct: 517 DAEFEVEDTIKLLGGKVGHVGRVTKGMFKVGDEVTLSVSPKKRADTCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +TPD LRFD  H  P+T+ E+   E  VN+ IA +LPVVT+IMN E
Sbjct: 577 KTVLGAHVEQKGSLVTPDRLRFDFAHFAPMTAEEIAKTEALVNEQIAASLPVVTQIMNIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVVS+     G  S  LCGGTHVS+TG I    IVSES I 
Sbjct: 637 EAKKTGAMALFGEKYADDVRVVSM-----GDFSKELCGGTHVSNTGMITTFKIVSESGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG    ++    +++L   A  +K +   ++ R+  + EE +  Q      
Sbjct: 692 AGVRRIEALTGDGVFAYYHNLEQQLAEAAKAVKATPATLLDRLHHLTEELKAAQSEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L     +  ++  V  ++  +  VD   L+ + D L++K+  G+I+L  +  
Sbjct: 752 KSRLAKDALGDVMDNVKEVKGVKLLAAKLEGVDMNGLRDLGDQLKEKLGDGVIVLASV-N 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S+L + T+       +A +L +  A ++GGGGG GRP+MAQ+GG N    + A+A 
Sbjct: 811 DGKVSLLSMATDGAQKQGAHAGNLIKGIAALVGGGGG-GRPNMAQAGGKNPAGVEDALAK 869

Query: 892 VASFLK 897
            A  L+
Sbjct: 870 AAEVLE 875


>gi|289549314|ref|YP_003474302.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182931|gb|ADC90175.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 864

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/901 (39%), Positives = 517/901 (57%), Gaps = 49/901 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF++ GH  + S+ LIP  DPTL+F N+GMVPFKN+F G EK  Y   
Sbjct: 1   MTGNEIRERFLSFFERKGHTRVRSAPLIPEGDPTLLFVNAGMVPFKNVFLGLEKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK  AI  AW+ LT+E  L 
Sbjct: 61  VSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKREAILYAWEFLTQELGLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+++VY +DEEA ++W +  GL  +++ R+   DNFW M E GPCGP SEI+ ++  
Sbjct: 121 ENRLWVSVYKDDEEALRIWTEEVGLPEERVWRMGEEDNFWQMGEVGPCGPSSEIYVER-- 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                        ER++EIWNLVFMQ+ +        LP  SIDTGMGLER+A+VLQ   
Sbjct: 179 ---------DSSEERFLEIWNLVFMQYNRDPSGHLHPLPHPSIDTGMGLERIASVLQNTP 229

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N++ DL + ++   E++TG  Y  +    V  RVI DHLR+ +F +ADG++ +N GRGY
Sbjct: 230 TNFETDLLRPILAFGEEITGKAYGQDYLTDVALRVIADHLRALTFAVADGVIFSNTGRGY 289

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +   LG  EP +   +  +   M  AYPELIQAK  ++  ++ E+ERF 
Sbjct: 290 VLRRILRRALRFGYKLGVYEPFLYKGVDTVVRVMKDAYPELIQAKEYVKGLIKVEEERFL 349

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG+  ++ +L    K  +L+G   F +YDT+G PLD+++++   +GL  ID+  F 
Sbjct: 350 QTLRRGMPAVEELLQKGEKTGVLDGKDVFTIYDTYGFPLDLLEEMAREKGLT-IDMEGFE 408

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  QR RAR H   + +   + ++  LKE    ++F+GY                   
Sbjct: 409 REMNLQRERARKH-FKIEAKQIKPVYSHLKELGKTSRFVGYQ------------------ 449

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V AIV+ G++V E   G+K E+V ++TPFYAE GGQ+GDTG   G   
Sbjct: 450 -----QYSSFTKVLAIVKDGQLVSELREGEKGEIVIEETPFYAEGGGQVGDTGIIEGMEG 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D Q   EG+ +H  +V +G ++    ++  ID + R  +  NH+ATHLLH AL  
Sbjct: 505 VFHVEDTQSPTEGVILHIGVVTKGRIKVGDEVLAQIDAERREDIRRNHTATHLLHAALRY 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q GS ++   LRFD THS P+   E+K IE+ VN  I +N PV+   M+   A
Sbjct: 565 VLGDHVRQAGSLVSDKYLRFDFTHSSPLKEEEIKKIEELVNQQIMKNEPVIVEEMDYRTA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I+SGA A+   KY +RVRV+S      G  S  LCGGTHV  TG+I    I+S+ S+ AG
Sbjct: 625 ISSGAIAIFEEKYGERVRVIS-----AGSFSKELCGGTHVDRTGDIGYFKIISQESVGAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---- 775
           +RRI A TG+ A      +   LK LA  L    GN++  VE++ E  + L+   +    
Sbjct: 680 VRRIVAKTGRWAVEEAYREHILLKELAEHLGTDPGNLLSVVEKLEERVKLLEREKSELEL 739

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K   +   E L    I  VN    ++   D   L+ + D ++ K  S +I L  +  E K
Sbjct: 740 KLLQEKLKEALKKESINGVNLYWGMVENTDQSALRQMADQIRSKDSSAVIFLASVKGE-K 798

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S L+ V+++L  + +AVD+ +    +LGGGGG GR  +AQ GG   +    A+  + + 
Sbjct: 799 LSTLVAVSKNLTHKLSAVDIVKQIGPILGGGGG-GREDLAQGGGTKPDAFPTAVEKLRAI 857

Query: 896 L 896
           L
Sbjct: 858 L 858


>gi|229186628|ref|ZP_04313789.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228596887|gb|EEK54546.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
          Length = 880

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 530/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI   W+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWGWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +    G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|321312266|ref|YP_004204553.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320018540|gb|ADV93526.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 878

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 518/911 (56%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +        
Sbjct: 417 VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTQAD------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + +  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+GD G
Sbjct: 469 -----------------ANIIVLLQDGQLIEEAHEGESVQIILDETPFYAESGGQIGDKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATHL
Sbjct: 512 YLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IVS
Sbjct: 632 LKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +  Q 
Sbjct: 687 ESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKDAQR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +         ++  VN ++  ++  D   L++++D L+ K+ S +I+L
Sbjct: 747 ENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K ++   VT+DL+++  +A  L + +A+V GGGGG GRP MAQ+GG    K +
Sbjct: 807 GAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGGG-GRPDMAQAGGKQPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+A V  ++K
Sbjct: 865 EALASVEDWVK 875


>gi|229086952|ref|ZP_04219109.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696328|gb|EEL49156.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 880

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ ED+EAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDVEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHAGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++  ++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDGLQAGEEGHLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKAIIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A++ V  ++K
Sbjct: 861 PAQVEEALSFVEEYVK 876


>gi|291544162|emb|CBL17271.1| alanyl-tRNA synthetase [Ruminococcus sp. 18P13]
          Length = 883

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/909 (35%), Positives = 501/909 (55%), Gaps = 52/909 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL FF+  GH  + S+SLIP  D +L+  NSGM P K  F GQ  P    VTT
Sbjct: 6   LNELREKFLSFFESKGHTRMDSASLIPQGDNSLLLINSGMAPLKKYFLGQATPPNVRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG+T RH T+FEMLGNFSFG YFK  AI+ AW+  TK  +L   
Sbjct: 66  CQKCIRT----PDIERVGKTARHGTYFEMLGNFSFGDYFKTEAIEWAWEFFTKVLELPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY++VY++D+EA+ +W K  G++ D + R+   DNFW     GPCGPCSEI+FD+G   
Sbjct: 122 KLYVSVYEQDDEAYDIWIKHIGVAPDHMTRLGKEDNFWEHGS-GPCGPCSEIYFDRGPEK 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +R++E+WNLVF QF    K     +   +IDTGMGLER+A V+Q   
Sbjct: 181 GCGSPDCKVGCECDRFVEVWNLVFSQFNSDGKGHYAEMEHKNIDTGMGLERLACVMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  ++++Q   ++ G+ Y+ +    V+ RVI DH+RS++F++ DG+ PANEGRGY
Sbjct: 241 NLFEVDTVQNIMQHICRIAGITYKEDPKKDVSLRVITDHVRSTTFMVGDGVTPANEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VL+R++RRA  + ++LG  EP +  +   +  E  +AYPEL + K LI + +R E+E F 
Sbjct: 301 VLKRLLRRAARHGKMLGIQEPFLYQVAETVIHENENAYPELAEKKDLICKIIRHEEESFA 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+G  LL+  L  +  D +  L+G  AFKL DT+G PLD+  +I   RG+  +D   
Sbjct: 361 KTIDKGTELLNMFLDRVSSDSLSMLSGADAFKLSDTYGFPLDLTMEIAAERGIK-VDEDK 419

Query: 418 FNQALEEQRSRARAHSL-GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + +E+Q+S ARA     + +  + +    +      T+F+GY  +             
Sbjct: 420 FRELMEQQKSMARADRASKVKTSWSNESIADI--SAPKTEFVGYTQM------------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + +  I   G+ V+    G    ++ D+TPFYAE+GGQ+ DTG  +G
Sbjct: 465 ----------SCGAKILGIFADGKQVDSIREGDVAALILDRTPFYAESGGQVADTGEIVG 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G    + DV+K   G F+H   +E GIL+    +   ID   R  +  NH+A HLL  A
Sbjct: 515 NGA-FAVADVKKLESGHFMHMGSLEDGILKVGDEVSAQIDADRRMSIMRNHTAAHLLQAA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q G  +  +  RFD +H   +TS EL+++ED VN  I + LP+  + M  
Sbjct: 574 LRQVLGDHVHQAGQLVNAEHCRFDFSHFNAMTSEELQAVEDLVNRKIFEALPITMQEMPI 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA AL G KY + VRVVS+E       S+  CGGTH+ +T  + L  I+SESS+
Sbjct: 634 EEARKLGAMALFGEKYGNIVRVVSMEG-----FSTEFCGGTHLDNTSRVGLFKILSESSV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEA+TG           ++L   AS LK+ +   +V R   +  E ++ +    
Sbjct: 689 AAGVRRIEAVTGTGVLKSYQEMQQRLHFAASALKLGNPLELVERCTAMIAELKEKEHQID 748

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
              +++    +     +  +I+ V  +S   +   +  L+ + D ++ ++   I+ +   
Sbjct: 749 ALNMKIADSQISGLFENAKEISGVRVISAFFNGTGADMLRQMGDQVKDRLDGNIVAVFAG 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              +K +   V  ++ + +  +A  + +  +  + GG GGGRP  A +G       D+A+
Sbjct: 809 MNGEKGTFYCVCGKEAVKKGAHAGKIVQRVSA-ITGGKGGGRPDSAMAGIGKQYMVDEAL 867

Query: 890 AGVASFLKK 898
           A + + + +
Sbjct: 868 AALDAIVGE 876


>gi|160933050|ref|ZP_02080439.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753]
 gi|156868124|gb|EDO61496.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753]
          Length = 877

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/907 (35%), Positives = 498/907 (54%), Gaps = 47/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L+FF+  GH  LPS SL+P  D +L+  NSGM P K  FTG+  P    V
Sbjct: 4   TGLNELREKYLQFFESKGHLRLPSFSLVPNGDKSLLLINSGMAPMKKYFTGEVTPPRNRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++ VG T RH T+FEMLGNFSFG YFK  A   AW+  TK  +L 
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTYFEMLGNFSFGDYFKHEATAWAWEFCTKVLELP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+++++Y +D+EAF +W K  G+   +I+R+   DNFW    TGPCGPCSE++FD+GE
Sbjct: 120 VERIWVSIYQDDDEAFDIWTKEVGVDPSRIVRLGKEDNFWEHG-TGPCGPCSELYFDRGE 178

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WNLVF QF+   +     L   +IDTGMGLER+A ++Q 
Sbjct: 179 EYGCGSPTCGVGCDCDRYVEFWNLVFSQFDNDGQGNYTPLEHKNIDTGMGLERLACIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N + +D  +++++   ++ G++Y  +    ++ RV+ DH+RS++F+I DG++P+NEGR
Sbjct: 239 VDNLFLVDTVQNIMKHISKIAGVEYGADPKTDISLRVVTDHIRSTTFMIGDGVMPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG   P +  +   +  E  SAYPEL++ +  I++ +  E+E 
Sbjct: 299 GYVLRRLLRRAARHGRLLGIRRPFLAEVCDTVINENQSAYPELVEKRDFIKKLISVEEEN 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +T+D+GL +L  ++ +  + +IL+G  AF+L DT+G PLD+ ++I+  +G+  +D   
Sbjct: 359 FDRTIDQGLQILGALIEN-SEKKILSGAEAFRLNDTYGFPLDLTKEIIAEKGMT-VDESE 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + L EQR+RAR      G+         L +   AT+F GY  L+             
Sbjct: 417 FQRLLSEQRTRARNARKNAGADAWLSESVDL-DGIPATEFTGYATLKD------------ 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ + AI++ GE VE A     V VV D+TPFYAE+GGQ+GDTG     
Sbjct: 464 -----------TARILAILRDGERVESAEMNDDVVVVLDRTPFYAESGGQVGDTGFLTDG 512

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R  + D  K   G+F+HH  V    L     +   +D   R  +  NH+A HLL  AL
Sbjct: 513 AGRFAVLDTTKHHSGVFLHHCHVVVEGLSVGSEVECVVDGIRRYNIMRNHTAAHLLQAAL 572

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q G  +    +RFD TH   +T  E   +E+ VND I   + V +  M  E
Sbjct: 573 RKVLGTHVEQAGQLVDGQRVRFDFTHFSALTKEETARVEEIVNDEILSAVQVTSTEMPIE 632

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY D VRVV       G  S+  CGGTHV++T  + L  I+SESS+ 
Sbjct: 633 EAKKLGAMALFGEKYGDIVRVV-----QAGEFSTEFCGGTHVNNTARLGLFKIISESSVA 687

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAK 776
           +G+RRIE +TG+    H+    + ++  +S LK  +   +    E +  E ++L+    K
Sbjct: 688 SGVRRIEGVTGRGVLQHMAEDAKTIQDASSALKLNNPAELPEACEHLLSEQKELRRELEK 747

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              +L    +         +  V  ++   S   +  L+++ D +++   + + +   I+
Sbjct: 748 ANARLANWQVDGLFDSAEMVKGVKIITGSFSSTTADALRTMSDRVRENAPNSVAVFAAIN 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K         E      +A ++ R +AK + GG GGG+P  A +G  +  K D+A+A 
Sbjct: 808 DGKAVLSATAGKEAQQKGCHAGNIVRAAAK-VAGGNGGGKPDFAMAGAKDLTKIDEALAA 866

Query: 892 VASFLKK 898
           V + + +
Sbjct: 867 VNTIVSE 873


>gi|307693255|ref|ZP_07635492.1| alanyl-tRNA synthetase [Ruminococcaceae bacterium D16]
          Length = 890

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/912 (36%), Positives = 512/912 (56%), Gaps = 54/912 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+++P    VTT
Sbjct: 9   LNELREMFLSFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPRHRVTT 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R G    D++N+G+T RH T+FEMLGNFSFG YFK+ AI  AW+ LT  +   LD
Sbjct: 69  CQKCIRTG----DIENIGKTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSKEWVGLD 124

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY +V+        D+EAF++W +  G+ A++I +    DNFW     GPCGPCSEI
Sbjct: 125 PERLYPSVFAGNETTPADDEAFRIWNEEIGIPAERIFKFGKEDNFWEHGS-GPCGPCSEI 183

Query: 176 FFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           ++D+GE    G PG +   + +RYIE+WN+VF QF+   +     L + +IDTGMGLER+
Sbjct: 184 YYDRGEQWGCGKPGCTVGCDCDRYIEVWNVVFSQFDNDGENHYTELKQKNIDTGMGLERL 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGIL 291
           A V Q   + +D+D   ++ +   ++TG  Y  ++   V+ RVI DH+RS++F+I DG+L
Sbjct: 244 ACVCQGVPSLFDVDTVMNITRKVTEITGASYGQSHATDVSLRVITDHIRSATFMICDGVL 303

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA  + +LLG  +P +  +   +  E    YPEL + +  I + +
Sbjct: 304 PSNEGRGYVLRRLLRRAARHGKLLGVNDPFLYTVCDTVIHENEGHYPELRERQDYITKVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R E+E F KT+D GL + + +LS      +   +G  AFKLYDT+G P+D+  +++  +G
Sbjct: 364 RVEEENFAKTIDGGLKIFNDMLSEHKAKGESTFSGADAFKLYDTYGFPIDLTLEMVEEQG 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F++ ++EQR RAR     LG      +     +    T+F+GYD        
Sbjct: 424 MK-LDEAEFHKQMDEQRQRARKAREALGDLGWAGV--EFGKDVPETEFVGYDHTAIDD-- 478

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+V + E  EE + G +  VV D+TPFYAE GGQ+ 
Sbjct: 479 --------------------AKVVALVVENEQAEEVMPGVEAIVVLDKTPFYAEMGGQVA 518

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG+  Q+TDVQK   G ++H   + +G+L+   ++   ID + R+ +   HSA
Sbjct: 519 DHGTISADGVTFQVTDVQKNKGGKYMHTGKLTQGVLKVGDTVSAAIDVKRRKAVMRAHSA 578

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL T+LG HV Q GS +  D LRFD TH   +T+ EL  +   VN+ + +   +
Sbjct: 579 THLLDKALRTVLGDHVHQAGSLVEEDRLRFDFTHFSALTAEELAKVSAMVNEAVLEGYDI 638

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T ++  E+A   GA AL G KY D VRVV +    G  +S   CGGTH+ +T ++ + +
Sbjct: 639 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDM----GEGYSVEFCGGTHLDNTAKVGVFH 694

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE S+ +G+RRIEA TGQ +   +    E L   A+ LK   G +  + E+   E + 
Sbjct: 695 ISSEFSVASGVRRIEATTGQASLDVMNRNQEMLFQAAAALKAKPGELREKAEQTMLEVKT 754

Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L  +  K K + +  +         ++ ++  ++  I++ D+ +L+ + D L+ K  + +
Sbjct: 755 LHQMVEKFKAKESAGEADRFLFGARQVGELKVLTATIADADANKLRQMGDMLRDKAPNVV 814

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +L  ++ EK   + +   E +     A ++ +     + GG GGG+P  A  GG +  K
Sbjct: 815 AVLATVNGEKITFLAVCGKEAVAKGIKAGEIIKNV-TAICGGKGGGKPDSAMGGGTDILK 873

Query: 885 ADQAIAGVASFL 896
            D A+A +  F+
Sbjct: 874 LDDALASIDDFV 885


>gi|16079794|ref|NP_390618.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310677|ref|ZP_03592524.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315000|ref|ZP_03596805.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221319921|ref|ZP_03601215.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221324202|ref|ZP_03605496.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|3122886|sp|O34526|SYA_BACSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2635186|emb|CAB14682.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 878

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 518/911 (56%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DKELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +        
Sbjct: 417 VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTVESTFVGYSQTKAD------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + +  ++Q G+++EEA  G+ V+++ D+TPFYAE+GGQ+GD G
Sbjct: 469 -----------------ANIIVLLQDGQLIEEAHEGESVQIILDETPFYAESGGQIGDKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATHL
Sbjct: 512 YLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IVS
Sbjct: 632 LKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E +  Q 
Sbjct: 687 ESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKDAQR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +         ++  VN ++  ++  D   L++++D L+ K+ S +I+L
Sbjct: 747 ENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K ++   VT+DL+++  +A  L + +A+V GGGGG GRP MAQ+GG    K +
Sbjct: 807 GAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGGG-GRPDMAQAGGKQPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+A V  ++K
Sbjct: 865 EALASVEDWVK 875


>gi|15604686|ref|NP_221204.1| alanyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|6226166|sp|Q9ZCA4|SYA_RICPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3861381|emb|CAA15280.1| ALANYL-TRNA SYNTHETASE (alaS) [Rickettsia prowazekii]
 gi|292572518|gb|ADE30433.1| Alanyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 877

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/890 (46%), Positives = 562/890 (63%), Gaps = 37/890 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI   WDLLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T+Y  D+ A   WKKI+GL  D+IIRI TNDNFWSM +TGPCGPCSEIFFD GE 
Sbjct: 125 DKLYVTIYHTDDPAASYWKKIAGLKDDRIIRIKTNDNFWSMGDTGPCGPCSEIFFDHGEE 184

Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+ +E  +R+IEIWN+VFMQ+EQ NK+ R  LPK SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDENCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADGI+P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKIKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL  A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAESFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +  +D   F + 
Sbjct: 365 LERGLKLLTEETKTLTKGSKLSGEVAFKLYDTYGFPLDLTEDILKNRDIT-VDHKGFEEL 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE+YG+T+F+GY L                   
Sbjct: 424 MLTQKERARKSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V+       +  ++ +QTPFY E+GGQ+GD G     G  
Sbjct: 465 ----NEAECKIIALIKNNNLVDNIQEINTQFLLIANQTPFYGESGGQMGDIGMIFSQGSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +  L I+ + R+ L I+HSATH+LH  L  I
Sbjct: 521 IEVIDTFKYLRSIIVHKCILKKGKINIGENANLNINIRYRQNLRIHHSATHILHAVLHKI 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +T   LRFD+ HSK IT+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKQVIQKGSLVTSTYLRFDINHSKAITNQEITLIEDQVNEIIRNNHEVTTTVMFTEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I+SES+I AG+
Sbjct: 641 KQGAIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGSFKIISESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G+     +  +D  LKS+ S  K ++  ++ +V  I E  ++L+    K  L 
Sbjct: 696 RRIEAVCGEFVIKLIRERDSLLKSIESSFKTNKNELITKVINILERNKELEKELEKAHLA 755

Query: 781 ---LNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L++E +     +I  +  +   +  +++K L+   + L KK+++ I++ +    + K
Sbjct: 756 SLDLSIEQIKKQTKEITGIKLLYKEVGNINNKILRQAAENLTKKVENLIVVYIAHGVD-K 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            S+ + V++ + D+FNA  +A+  +  LGG GGGG+  +AQ+GG +    
Sbjct: 815 LSITVAVSKAITDKFNAGIIAKELSLFLGGSGGGGQASIAQAGGNDIINL 864


>gi|239948196|ref|ZP_04699949.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922472|gb|EER22496.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 878

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/901 (45%), Positives = 565/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K  R  LP+ SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG     +RVI DHLR+SSFLIADG++P+NEGR YVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFFYRVIADHLRASSFLIADGVIPSNEGRSYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+++DIL  R ++ +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLIEDILKNRDIS-VDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL------------------- 464

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
               N     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 465 ----NEAECKIIALIKDNNLVNDIKEIDTQFLLISNQTPFYGESGGQMGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEINLIEDKVNEIIRDNHEVNTTLMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRCTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  RKL+    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKDNLLKSVESSLKTNKNELITKVNNILERNRKLEKELEKTHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAEQITGIKLLHKKVGNIDNKILRQAAENLTKKLEDLIVVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNAGIIAKELSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|259046499|ref|ZP_05736900.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036664|gb|EEW37919.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 914

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/919 (38%), Positives = 504/919 (54%), Gaps = 66/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+   K  F G E P    +T
Sbjct: 39  SSSEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEVPRIT 98

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEM+GNFS G YFKE  I  AW+ LT  K   L
Sbjct: 99  NAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEKWLGL 154

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+T Y +D E   LW    GL  D II +   DNFW +   GPCGP +EIF+D+G
Sbjct: 155 DPDRLYVTYYPKDPETKALWMDKVGLPEDHIIPV--EDNFWDIGA-GPCGPDTEIFYDRG 211

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF QF          LP  ++DTGMGLER+
Sbjct: 212 EKYNNLAEDDPENYPGG--ENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLERV 269

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+  E +  G KY  +    V+ +VI DH+R+ SF I DG 
Sbjct: 270 VSVIQDTPTNFETDLFMPIIKQLESLSAGKKYNDSKELDVSFKVIADHIRAVSFAIGDGA 329

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY++RR++RR++ + + LG     +  L+P +   M S YPE+ +    I++ 
Sbjct: 330 LPSNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVAQIMHSYYPEVTENMEFIQKV 389

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + +E+ RF +T+  GL +L+ + + +    +  L+G+ AFKLYDT+G P ++  +     
Sbjct: 390 IANEENRFQETIHDGLSILETIFADMKASNETTLSGENAFKLYDTYGFPYELTLEYASDN 449

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   +D   F   ++ Q+ RARA      S   +     L++    ++F+GY        
Sbjct: 450 GFT-VDEEGFQAEMQAQKDRARAARNTETSMNVQSAV--LRDITVESEFVGYAST----- 501

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                 ++KAIV   E+VE A      ++VFD+TPFYAE GGQL
Sbjct: 502 ------------------TEEGVLKAIVVDDELVESAHKDAHAQLVFDRTPFYAEMGGQL 543

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   +  V+K   G  +H   V  G L+   +  L +D   R ++  N
Sbjct: 544 ADHGTIQDANGTVVANVLQVKKAPNGQPLHTVEVI-GDLQVNAAYTLVVDASERAKIIKN 602

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS +TP GLRFD +H   +TS EL  +E  VN+ I   
Sbjct: 603 HTATHLLHQALKDVLGTHANQAGSLVTPTGLRFDFSHFGQVTSEELAEMERIVNEKIWAG 662

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L VVT     EDA + GA AL G KY + VR+V++     G  S  LCGG HV++T EI 
Sbjct: 663 LEVVTVETTLEDAKSRGAMALFGEKYGNLVRMVNI-----GDWSIELCGGIHVANTQEIG 717

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWE 765
           L  IVSES I AG+RRIEA+T + A   L   +  LK +A  +K  Q + VV RV  + +
Sbjct: 718 LFKIVSESGIGAGVRRIEAVTSKEAFDLLSHHENLLKQVAGEVKAIQLDTVVERVATLGQ 777

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E ++     AK K ++   ++     +  ++   +F++  +   +  EL+ + D  ++K 
Sbjct: 778 ELKEANGEIAKLKAKIMKSEVADVFNNVEEVNGTSFITVALENKEMDELRQLADTWRQKG 837

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S  I +VG +   KA++L+ V++D   R   A D+ +  A  + GG GGGRP MAQ+GG
Sbjct: 838 ASD-IFVVGTASADKANLLVAVSKDANARGLKAGDIIKAIAPAIQGG-GGGRPDMAQAGG 895

Query: 880 PNGNKADQAIAGVASFLKK 898
            N     QA   +  +L K
Sbjct: 896 KNPAGIPQAFELLKEYLAK 914


>gi|196250079|ref|ZP_03148773.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16]
 gi|196210263|gb|EDY05028.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16]
          Length = 878

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 525/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG LP+
Sbjct: 237 ILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+
Sbjct: 297 NEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRT 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     G++
Sbjct: 357 EEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    ++F+GYD L        
Sbjct: 417 -VDHAGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKDESRFVGYDEL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 466 ---------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+ATH
Sbjct: 511 GVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++PV  
Sbjct: 571 LLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 631 FYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R+LQ
Sbjct: 686 SESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQ 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         ++  V  ++  +   D  +L+++ D L++K+ + +I+
Sbjct: 746 RENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  + +  K  ++  VT+DL+ + ++A  L +  A   GGGGG GRP MAQ+GG + NK 
Sbjct: 806 LAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKDANKV 863

Query: 886 DQAIAGVASFLK 897
            +A+  V +++K
Sbjct: 864 GEALDYVETWVK 875


>gi|220906096|ref|YP_002481407.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862707|gb|ACL43046.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 889

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/907 (38%), Positives = 520/907 (57%), Gaps = 50/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ++      
Sbjct: 16  MSGAEIRQRFLDFFAARGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQEAEVPRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR    +ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T+ + L 
Sbjct: 75  TTSQKCVR----NNDIENVGRTARHHTFFEMLGNFSFGDYFKPDAIAWAWELVTEVYHLP 130

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL ++V+ +D+EAF++W +  GL   +I R+  + NFW+   TGPCGPCSEI+FD   
Sbjct: 131 ADRLVVSVFQDDDEAFEIWNQKIGLPPQRIRRMGEDSNFWAAGPTGPCGPCSEIYFDFHP 190

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G      ++  R++E++NLVFMQ+ +  +     L   +IDTGMGLERMA VLQ   
Sbjct: 191 E-RGEQNIDLDDDSRFLELYNLVFMQYNRDAEGNLSPLKNKNIDTGMGLERMAQVLQGVP 249

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   +IQ + ++  + Y  +     ++ +VI DHLR+   +IADGI  +N GRG
Sbjct: 250 NNYETDLIFPIIQKAAEIADLDYSKSTDSTKISLKVIGDHLRAVMHMIADGITASNVGRG 309

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR + + RL+G  +P    ++        +AYP +      I+  L+ E+E F
Sbjct: 310 YVLRRLIRRIVRHGRLIGIDKPFTAEVVETAIELAEAAYPNVRLKGDSIKAELQREEESF 369

Query: 359 GKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            KTLDRG  LL  ++S +      + ++G  AF LYDT+G PL++ Q+I   +GL  +D+
Sbjct: 370 LKTLDRGEKLLADIISRVQSKPGKQQISGQDAFTLYDTYGFPLELTQEIAAEQGLT-VDL 428

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR RAR     +   T +     L E    T+F+GY               
Sbjct: 429 EGFEAEMEQQRQRARDAHETIDL-TVQGTLDKLAEHIHTTEFLGYSQFSSP--------- 478

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         SIV A++ +G+ V    +G  V++V DQTPFYAE+GGQ+GD G   
Sbjct: 479 --------------SIVTALLVEGQTVTTVEAGTTVQIVLDQTPFYAESGGQIGDRGYLS 524

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           GD + ++I DVQK++ GIF+H+  VERG ++    +   ID   RR++  +H+ATHLL  
Sbjct: 525 GDTLLVRIEDVQKES-GIFIHYGRVERGSVQVNDRVTAQIDLSCRRRVQAHHTATHLLQS 583

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++  ++SQ GS ++ D LRFD    +P+T+AEL++IED +N  IA+  P  T ++ 
Sbjct: 584 ALKKLVDDNISQAGSLVSFDRLRFDFNCPRPVTAAELQAIEDQINTWIAEAHPAQTSVLP 643

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A A GA A+ G KY   VRV+ V        S  LCGGTHVS+T EI L  I++E+ 
Sbjct: 644 IAEAKAKGAIAMFGEKYGSEVRVLDVAG-----VSMELCGGTHVSNTAEIGLFKIIAETG 698

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773
           + +GIRRIEA+ G     +L  ++  ++ L+   KV    V  RV  +  E +  + QL 
Sbjct: 699 VASGIRRIEAVAGPAVLEYLNLRERVVRDLSDRFKVKPEEVPDRVTALQTELKTTQKQLA 758

Query: 774 HAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L L   D    ++  +     +   +  VD++ LK+  + L +K+  G ++L  +
Sbjct: 759 ELKNELALAKSDSLLAQVEAIGSFKVLVAQLEGVDAEALKTAAERLLQKLAPGAVVLASV 818

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + +K +++   + +   +  +A       A+ L GG GGGRP++AQ+GG +  K  +AI
Sbjct: 819 PELEKVNLVAAFSSEAQQKNLHAGKFIGEIAQ-LCGGKGGGRPNLAQAGGRDAAKLPEAI 877

Query: 890 AGVASFL 896
                 L
Sbjct: 878 EFARKKL 884


>gi|46907732|ref|YP_014121.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b F2365]
 gi|59798548|sp|Q71ZG6|SYA_LISMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46881001|gb|AAT04298.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
          Length = 879

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKLEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|296282673|ref|ZP_06860671.1| alanyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 886

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/890 (48%), Positives = 565/890 (63%), Gaps = 34/890 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M++ + IR TFLEFF+   H+ + S+ L+P NDPTLMF N+GMVPFKN+FTG E P    
Sbjct: 1   MTSTNDIRRTFLEFFESRDHKRVASAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPAPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+EF L
Sbjct: 61  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHNAWTLLTEEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RL  TVY  D+EAF LW+KI+GL  D+IIRI T DNFW+M + GPCGPCSEIF+D G
Sbjct: 121 DKNRLLATVYHTDDEAFDLWRKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFWDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           + IPGG PGS  E+G+R++EIWNLVFMQ EQ+  +    LP  +IDTGMGLER+A VLQ 
Sbjct: 181 DHIPGGPPGSPEEDGDRFVEIWNLVFMQNEQRGGEIIGDLPNQNIDTGMGLERIAAVLQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNYD D F+ LI+++E           I ++RVI DHLR++ FLIADG+LP+NEGRGY
Sbjct: 241 VHNNYDTDTFRTLIESTEAQLHADATDYTIASYRVIADHLRATGFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +A LLG   PLM  L+P L  EMG AYPEL + + LIEETL  E+ RF 
Sbjct: 301 VLRRIMRRAMRHAHLLGAKTPLMHRLVPTLVGEMGQAYPELGRGQALIEETLEREETRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LLD     LGK + L+G+VAFKLYDT+G P D+ +D L  +G+A +D   F+
Sbjct: 361 ETLEKGLRLLDEATGSLGKGDQLDGEVAFKLYDTYGFPYDLTEDALRGQGIA-VDREGFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR  ARA   G G     ++WFS+ E+ GAT+F GY   +G              
Sbjct: 420 AAMARQREAARAAWKGSGQAADSEVWFSIAEREGATEFTGYSATQG-------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538
                       V AIV+ G  V  A +G+ V ++ +QTPFY E+GGQ GD+G     DG
Sbjct: 466 ---------EGQVVAIVKDGVEVTSAAAGEDVVLLTNQTPFYGESGGQSGDSGSITTHDG 516

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +R+ + D  K    +  H   +E G +R    + LT+D Q R ++  NHSATHLLH AL 
Sbjct: 517 LRIAVRDTGKPLGRLHTHQGKIEAGEVRVGDEVRLTVDEQRRNRIRANHSATHLLHAALR 576

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG  V+Q GS +  D LRFD ++ + I    L  IE +VN  I  N  V TR+M  +D
Sbjct: 577 RRLGDQVTQKGSLVAEDYLRFDFSYPEKIDREGLDRIEQDVNSQIRGNSEVGTRLMTPDD 636

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+A+GA AL G KY D VRV+S+  +     S  LCGGTHV  TG+I L  I+ ESS+ +
Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRDADADFSIELCGGTHVERTGDIGLFAIIGESSVSS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEA+TG  A  +L  +   L  ++  L  +    V +++ +  + + L  +L  AK
Sbjct: 697 GVRRIEALTGNAASEYLRTRANALNEISGKLGATPDAAVAQLDALLAQRKTLERELADAK 756

Query: 777 RKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           R L L+        +S   I  V F   +I  +D KEL+ ++DA ++++ SGI  +    
Sbjct: 757 RALALSGGGGDGPQVSDETINGVTFSGQVIEGLDPKELRPLLDAAKQRLGSGIAAICAT- 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            + KA+  + VT+DL DRF+AV+L R     LGG GGGGR  MAQ GGP+
Sbjct: 816 NDGKAAFAVAVTDDLTDRFSAVELVRAGVAALGGKGGGGRADMAQGGGPD 865


>gi|157965032|ref|YP_001499856.1| alanyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844808|gb|ABV85309.1| Alanyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 883

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 561/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 10  TTEEVRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 70  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 130 DKLYATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 189

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 190 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 249

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNY+IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 250 NNYNIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 309

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 310 RRIMRRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKAT 369

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R ++ +D   F + 
Sbjct: 370 LERGLKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILKTRDIS-VDHKGFEEQ 428

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 429 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTLNEAKC-------------- 474

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 475 ---------KIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 525

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 526 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 585

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T  M  EDA+
Sbjct: 586 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAV 645

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+
Sbjct: 646 KQGAMALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGV 700

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++++    K    
Sbjct: 701 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLA 760

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 761 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 819

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 820 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 879

Query: 896 L 896
           L
Sbjct: 880 L 880


>gi|288555383|ref|YP_003427318.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288546543|gb|ADC50426.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 879

 Score =  890 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 523/912 (57%), Gaps = 57/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P    +T
Sbjct: 5   TSAQVRQMYLDFFKEKGHDIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +TV+ ED EA+  W K  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPEKLSVTVHPEDNEAYDYWAKNIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+E+WNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 PSYGDDANDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +IQA+EQ+T +KY  +    V  +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDTKTNFETDLFMPIIQATEQLTSVKYGADTETDVAFKVIADHVRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+L+G   P M  L+P +   M   YPE+ +    I++ +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKLIGIDRPFMYELVPVVGEIMVDFYPEVKEKTEFIQKVMKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +LD +L+      +E+++G   F+LYDT+G P+D+ ++ +  +GL  
Sbjct: 358 EERFHETLNEGLGILDKILAEAKGKNEEVISGSDVFRLYDTYGFPVDLTEEYVEEKGLT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F   +E+QRSRARA     GS   +     L E    + F+GY+ L         
Sbjct: 417 IDRDGFEVEMEQQRSRARAARQESGSMQVQDEL--LGEINAESTFVGYNQL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V  ++   E +    +G+  +V+   TPFYAE+GGQ+ DTG
Sbjct: 466 --------------SAEGTVSVLIAGKERMSSVPAGETAQVILSTTPFYAESGGQVADTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+G+  ++T+V K   G  +H  +VE G L+  +++  T++  +R  +  NH+ATHL
Sbjct: 512 TIVGEGVIARVTEVTKAPNGQHLHTVVVEEGELKEGVTVTSTVEETSRIGIVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS ++ D LRFD +H   +T  EL  IE+ VN+ +   + V   
Sbjct: 572 LHQALKDVLGVHVNQAGSLVSEDRLRFDFSHFGQVTKEELTKIEEIVNEKVWNAISVDIS 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  +VS
Sbjct: 632 EKKLAEAKEMGAMALFGEKYGDTVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKVVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
           ES I AG+RRIEA+TGQ A   +  Q   L + +  +K     +V  R+E + ++ R LQ
Sbjct: 687 ESGIGAGVRRIEAVTGQGAYEFMNDQLRLLTTASELVKAKNVKDVPARIEAMQQQIRDLQ 746

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         ++  V  +S  ++  D   L++++D L++ + SG+I+
Sbjct: 747 RENESLSSKLGNMEAGNLIDEAVEVNGVKVLSKEVNASDMDGLRAIVDKLKQDLDSGVIV 806

Query: 827 LVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  +S E K +++  VT+DL+    +A  L +  A   GGGGG GRP MAQ+GG    + 
Sbjct: 807 LGAVSGE-KVNLVAGVTKDLISQGHHAGKLVKEVASRCGGGGG-GRPDMAQAGGKKPEQL 864

Query: 886 DQAIAGVASFLK 897
            +A+A V  F+K
Sbjct: 865 AEALAYVPEFVK 876


>gi|311031558|ref|ZP_07709648.1| alanyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 877

 Score =  890 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/911 (39%), Positives = 535/911 (58%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPANPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKKEAIDWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +L +T++ EDEEA+K W ++ G+ A++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 EAEKLSVTIHPEDEEAYKYWNEVIGVPAERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E     L         E ERY+EIWNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 ESYGNDLNDPELYPGGENERYLEIWNLVFSEFNHNPDHTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I+A+E V+G KY  N       +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDVPTNFDTDLFIPIIEATENVSGEKYRTNVEKDTAFKVIADHIRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ LG   P M  L+P +   M   YPE+ + +  I+  +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKQLGINRPFMYELVPVVAEIMVDFYPEVKEKQDFIQRVVKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V++   +D   +++G  AF+LYDT+G P+++ ++ +  +G+  
Sbjct: 358 EERFHETLNDGLAILSTVIAKAKEDGSTVVSGSDAFRLYDTYGFPVELTEEYVEEQGMT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + +E QR RAR+      S   +     L E    + F+GYD L         
Sbjct: 417 LDHEGFEKEMEMQRDRARSARQDSNSMQVQS--GVLGEIRTESSFVGYDQL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + +  IV+ GE+ + AV+G +V+V+  +TPFYAE+GGQ+ D G
Sbjct: 466 --------------TAETTLSIIVKNGELADSAVTGDEVQVILAETPFYAESGGQIADHG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +  R  + DVQK   G  +H  +VE G+L  E ++   +  +NR Q+  NH+ATH+
Sbjct: 512 YIVTESGRGFVKDVQKAPNGQNLHTIVVEEGVLNREQAVKAEVHAKNRAQIIKNHTATHI 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T D LRFD +H   +T  E++ IE  VN+ I  ++ VV  
Sbjct: 572 LHQALKDVLGTHVNQAGSQVTADRLRFDFSHFGQVTQEEIEKIEAIVNEKIWASINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +  +A A GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IVS
Sbjct: 632 NKSISEAKAMGAMALFGEKYGDIVRVVQV-----GEYSLELCGGCHVPNTSEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RR+EA+TG+ A   L  Q + LK  A+ LK     V  R++ +  + ++LQ 
Sbjct: 687 ESGIGAGTRRMEAVTGEGAYRLLNDQVQLLKDAAAKLKTKPQEVGTRIDVLLSDMKELQR 746

Query: 773 IHAKRKLQLN--VEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827
            +     +L          K  DVN ++ ++S+V   D   L++++D L+ K+ SGII+L
Sbjct: 747 ENQSLASKLGNIEASSLSSKAKDVNGVTMLVSKVAGTDMNNLRTMVDDLKNKLGSGIIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + ++ K ++   VT+DL+++ ++A  + +  A   GGGGG GRP MAQ+GG N  + D
Sbjct: 807 ASV-QDGKVNISAGVTKDLIEKGYHAGKVVKEVATRCGGGGG-GRPDMAQAGGKNPEQVD 864

Query: 887 QAIAGVASFLK 897
            A+  V  ++K
Sbjct: 865 SALQSVEDWIK 875


>gi|167758103|ref|ZP_02430230.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704]
 gi|167664000|gb|EDS08130.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704]
          Length = 879

 Score =  890 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 508/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ +I+  W+ LT    LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EA+++W K  G+ A++I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIPAERIFRFGKEDNFWEHGS-GPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A ++QE  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACIVQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L     ++   +Y  +    V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SMFDIDTMKALRDHVCRLAHAEYGRDEETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLL      ++ L   +       YPEL + K  I + +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLDIPGEFLVELAQNVIEGSKDGYPELEEKKEFIFKVIAKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +++   K   + L+G  AFKLYDT+G PLD+ ++IL  +G++ +D   
Sbjct: 361 KTIDQGLSILSDMVAETEKKGEKTLDGQNAFKLYDTYGFPLDLTKEILEEKGMS-VDEKG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+E QR  AR           +   +   +    T+F+GYD L              
Sbjct: 420 FKEAMEIQRKTAREAREVTNYMGADVTVYESIDPSITTEFVGYDNLSY------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +    E+V+    G++  +  ++TPFYA +GGQ  D G     
Sbjct: 468 -----------ESEVTVLATDTELVDALSDGERGTIFVEKTPFYATSGGQEADKGIIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + DV K   G F H   V +G+++      L +D  NR   + NHSATHLLH AL
Sbjct: 517 DGEFIVEDVVKLMGGKFGHIGHVSKGMIKVGDKAALEVDTDNRMLSANNHSATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS +  D LRFD TH   +T  ELK +E  VN+ I   L V  + M  E
Sbjct: 577 RMVLGNHVEQAGSSVNADRLRFDFTHFSALTEEELKKVEAIVNEQIMNCLNVKVQNMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY   VRVVS+     G  S   CGGTHV++TG I    I+SE+ + 
Sbjct: 637 EAKKTGAAALFGEKYGSIVRVVSM-----GDFSIEFCGGTHVANTGVITAFKILSETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +EKL   A  LK +   +  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSKGLLKYYDELEEKLHEAAKLLKAAPDKLTDKISHLQAENKALHSEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + +        ++  V  ++  + +VD   L+ + D L+KK+  GII++   + 
Sbjct: 752 KSKLAQDAMGDVMDQVVEVKGVKLLATKVEDVDMNGLRDLGDQLKKKLGEGIIVIAS-AT 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S++   T+  +D+  +A +L +  A ++GGGGG GRP+MAQ+GG N    D+AIA 
Sbjct: 811 DGKVSLMATATKGAIDKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKNPAGMDEAIAK 869

Query: 892 VASFLK 897
            A  L+
Sbjct: 870 AAEVLE 875


>gi|205830251|sp|A8F323|SYA_RICM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 878

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 561/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNY+IDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYNIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R ++ +D   F + 
Sbjct: 365 LERGLKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILKTRDIS-VDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTLNEAKC-------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ---------KIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T  M  EDA+
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+     +  +D  LKS+ S LK ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHKKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|224369825|ref|YP_002603989.1| alanyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|223692542|gb|ACN15825.1| AlaS1 [Desulfobacterium autotrophicum HRM2]
          Length = 872

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/902 (41%), Positives = 547/902 (60%), Gaps = 45/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +  R  F+E+F+K+ H  + SSSL+P +DPTL+FTN+GMV FK +FTG EK  Y   
Sbjct: 1   MTGNEARRLFIEYFEKHHHHHVRSSSLVPSDDPTLLFTNAGMVQFKRVFTGDEKRDYSLA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI+ AWDLLT  +  D
Sbjct: 61  VTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGQYFKDKAIEFAWDLLTNGYGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY +D+EA+ +W+   G+   +I+R+   DNFWSM +TGPCGPCSEI  D+GE
Sbjct: 121 PEKLWVSVYLDDDEAYNIWRDKIGVPESRIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGE 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   E +RY+E+WNLVFMQF++    +   LPK SIDTG+GLER+ +VLQ+
Sbjct: 181 KYGCGSPDCAVGCECDRYLELWNLVFMQFDRDATGKMTPLPKPSIDTGLGLERVISVLQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              NY+ DLF  +++  E ++G+K +    N V  +VI DH R+++FLI DGILP+NEGR
Sbjct: 241 VPTNYETDLFLPIMERVEVLSGLKKDASRENSVAMKVIADHSRAAAFLICDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R LG   P +   +  +   M  AYPEL ++   I   +++E+ +
Sbjct: 301 GYVLRRIMRRAIRYGRNLGLVRPFLHETVQQVFEIMEQAYPELKESSAFILNVVKNEEAK 360

Query: 358 FGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL LL+  +        + + GDV FKLYDT G P+DI+ D++  R +  +D+
Sbjct: 361 FSETLDVGLRLLNETIEKTEASGAKQIAGDVIFKLYDTFGFPVDIINDVVADRAIT-LDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +N+A+++QR+R+++  +  G G   + + +L  +   T+F GY  L            
Sbjct: 420 DGYNRAMDDQRARSKSSKIFAGVG---EAYKTLTSQGVKTEFTGYTDLET---------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +S V  IV+    V  A  G ++E+V   TPFYAE+GGQ GD+G   
Sbjct: 467 -------------TSEVLLIVKNDVAVTTAGQGDQIEIVTRATPFYAESGGQAGDSGVIK 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G  + + +      G+ +HH  V  G L+T+ ++++ +D + R   ++NH+ATHLLH 
Sbjct: 514 TKGCTVAVDNTLADPSGLRIHHGKVVSGALQTKANVLMVVDQEQRAATAMNHTATHLLHA 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS +T D LRFD TH   IT  E++++E  VN  I +N+PV T  M+
Sbjct: 574 ALRKVLGDHVKQSGSLVTKDRLRFDFTHFAAITRQEIEAVESEVNLRIRENVPVATIEMD 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+ SGA AL   KY DRVRVVS+        S  LCGGTH   +G I L  IVSE  
Sbjct: 634 MDEAVKSGATALFEEKYGDRVRVVSMAG-----FSKELCGGTHTDRSGNIGLFQIVSEGG 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEA+TG RA  ++ G    +   +  LK ++G VV +V+ +  + +       
Sbjct: 689 IASGIRRIEALTGARALDYVHGITADILETSRVLKSARGEVVEKVKTLVADKKAADKEIV 748

Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K ++  +     D    +I  V  +S ++   +  +L+ + D  + KI SG+++L G 
Sbjct: 749 SLKAKIASKSVENMDDDIREIDGVRIVSKLVQIDNPSQLRDLADKFKAKIGSGVVLL-GA 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               KA ++ VV++DL  RF A  + + +A ++GGGGG GRP MAQ+GG      ++A+A
Sbjct: 808 ESNGKALLVSVVSDDLTKRFKAGAIVKKAAAIVGGGGG-GRPDMAQAGGSKPEFLERALA 866

Query: 891 GV 892
            V
Sbjct: 867 SV 868


>gi|260583982|ref|ZP_05851730.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158608|gb|EEW93676.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 881

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/919 (38%), Positives = 510/919 (55%), Gaps = 66/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+   K  F G E P    +T
Sbjct: 5   SSSEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEVPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEM+GNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  NAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEKWLAL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY+T Y +D E   LW +  GL  D II +   DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPNRLYVTYYPKDPETKYLWMEKVGLPEDHIIPV--EDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF QF          LP  ++DTGMGLER+
Sbjct: 178 EKYQTLAEDDPENYPGG--ENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +IQ  EQ+  G KY  +    V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSVIQDTPTNFETDLFMPIIQQLEQLSAGKKYNTSKDLDVSFKVIADHIRAVSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY++RR++RR++ + + LG     +  L+P + + M S YPE+ +    I++ 
Sbjct: 296 LPSNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVASIMHSYYPEVTENMEFIQKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + +E+ RF +T+  GL +L+ V + + +    +L+G+ AFKLYDT+G P ++  +     
Sbjct: 356 IANEENRFQETIHDGLAILETVFAEMKEQNQTVLSGENAFKLYDTYGFPYELTLEYASDN 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   +D   F   ++ Q+ RARA      S   +     L++    + F+GYD       
Sbjct: 416 GYE-VDEEGFQAEMKAQKERARAARNTETSMNVQSAV--LRDITVESTFVGYDRT----- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                 ++ AIV + E+VE A+   +V+VVF+QTPFYAE GGQL
Sbjct: 468 ------------------TEKGLLSAIVYEDELVESALEDTRVQVVFNQTPFYAEMGGQL 509

Query: 529 GDTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    +  ++   +  V+K   G  +H   V    ++   + VL +D Q R +L  N
Sbjct: 510 SDHGVIKDESGQVVATVVQVKKAPNGQPLHTIDVI-APMQLNSTYVLEVDQQERAKLIKN 568

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS + P  LRFD +H   +T+ EL  +E  VN+ I   
Sbjct: 569 HTATHLLHQALKEVLGTHANQAGSLVAPGYLRFDFSHFGQVTAEELAEMERIVNEKIWAA 628

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L VVT     E+A   GA AL G KY ++VR+V++        S  LCGG HVS+T EI 
Sbjct: 629 LDVVTVETTLEEAKKLGAMALFGEKYGNKVRMVNIAN-----WSIELCGGVHVSNTQEIG 683

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWE 765
           L  I+SES I AG+RRIEA+T Q A   L   +  LK +AS +K V   +   RV  + +
Sbjct: 684 LFKILSESGIGAGVRRIEAVTSQEAFELLAKHELLLKQIASDVKSVQLDSTPERVSHLQQ 743

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E ++ Q   +  K +L   ++     S     + +F++  +   D  EL+ + D  ++K 
Sbjct: 744 ELKEAQHEISALKAKLMKSEVADLFESVSTAGNYSFITVHLPNKDMNELRQLADTWRQKA 803

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S  + +V  ++ +KA++L  V++D  ++   A D+ +  A  + GG GGGRP MAQ+GG
Sbjct: 804 ASD-VFVVATNEGEKANLLAAVSKDANEKGIKAGDIIKSIASHIQGG-GGGRPDMAQAGG 861

Query: 880 PNGNKADQAIAGVASFLKK 898
            N      A+  V  FL +
Sbjct: 862 KNPAGIPAALKAVEEFLTQ 880


>gi|325661656|ref|ZP_08150280.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472183|gb|EGC75397.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 879

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/907 (39%), Positives = 518/907 (57%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AIQ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +DEEAF++W K  G+ A++I +    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     +   + Y  + +  V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E+++F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKDFIFNVLTQEEDKFD 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + +  +++L+G+ AFKLYDT+G PLD+ ++IL  +G  GID   
Sbjct: 361 KTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A+E+QR +AR           +   +   +    T+F+GYD L              
Sbjct: 420 FQAAMEKQRVQAREARKETNYMGADATVYDEIDPSVTTEFVGYDTL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EI E    GQ+  +  ++TPFYA  GGQ GDTG     
Sbjct: 466 ---------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTGIIHTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + +  K   G F H   V +G+ RT  ++ L +  + R     NHSATHLL  AL
Sbjct: 517 DAEFAVEETIKLLGGKFGHIGRVTKGMFRTGDTVTLEVRSKERLNTCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H   +T  E++++E  VN+ IA+N PVVT +MN E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTKEEIEAVEALVNEEIAKNNPVVTEVMNVE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY + VRVV++     G  S  LCGGTHVS+TG I    IVSES + 
Sbjct: 637 EAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG    ++   Q++KL   A  LK +  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHSEIESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +   E +        +I  V  ++  + +VD   L+ + D L++K+  G++++   + 
Sbjct: 752 KSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVIASAA- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   TE  L +  +A +L +  A ++GGGGG GRP+MAQ+GG N    D A++ 
Sbjct: 811 GGKVSLMATATEGALKKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKNPEGIDAALSK 869

Query: 892 VASFLKK 898
               L +
Sbjct: 870 AKEVLAE 876


>gi|299530963|ref|ZP_07044376.1| alanyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298720920|gb|EFI61864.1| alanyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 874

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/909 (41%), Positives = 533/909 (58%), Gaps = 56/909 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +V+ IR TFL+F+   GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K  Y   T
Sbjct: 7   SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+  W+LLTK F L  
Sbjct: 67  SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175
            +L  TVY ED+EA+ +WK + GL A++IIRI  N       DNFW MA+TGPCGPCSEI
Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186

Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           F+D GE I GG PGS  E+G+R+IEIWN VFMQF+ +       LP   +DTGMGLER+A
Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ   +NY+IDLF+ LI+A+ + T  +       + +VI DH+R++SFL++DG++P+N
Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRETHTEDLST--PSLKVIADHIRATSFLVSDGVIPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I   L++E
Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQEAHITSVLKAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF +TL  G+ +LD  L+  G  ++L GDVAFKL+DT+G PLD+  D+   RG+  +D
Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              FN A++ Q+  ARA           K+  +L+    A  F GYD L           
Sbjct: 422 EAGFNAAMQHQKETARAAGK-------FKMDRALEYTGDANVFTGYDKLA---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         ++ + A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD G  
Sbjct: 465 -------------EAAKIVALYADGVSVNELQAGQNGVVVLDTTPFYAESGGQVGDQGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
              G R  + D  K    +F HH ++E G L+   ++   +D   R     NHS TH++H
Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +  +  RFD  H+ P+T+ +++ IE  VN  +  N     R+M
Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTATDARVM 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + E A  +GA  L G KY + VRV+ +        S  LCGGTHVS TG+I L  +V ES
Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGS------SRELCGGTHVSRTGDIGLFKVVGES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIE ITG+ A ++L   +  +   A+  K     +  R+    ++ + L+   
Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPVAELTNRIGGALDQIKALEKEI 745

Query: 775 A--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A  K KL  +  D    + ADVN +  +   +   D+K L+  MD L+ K+ + +I+L  
Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +  + K  +   VT+    +  A +L    A+ +GG GG G+P MA +GG +      A+
Sbjct: 806 VDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQVGGKGG-GKPDMAMAGGTDAAAVPAAL 863

Query: 890 AGVASFLKK 898
           A V ++  +
Sbjct: 864 ASVQAWAAE 872


>gi|323692006|ref|ZP_08106254.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503929|gb|EGB19743.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 879

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/907 (37%), Positives = 511/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 6   VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+  ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RYIE+WN VF QF          L   +IDTGMGLER+A V+QE  
Sbjct: 181 GCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    ++   KY+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 241 SLFTVDTNKALLDRVCELAHTKYQEDHETDVSLRIVADHIKSCTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG     M  L   +       YPEL +   +I + L  E+++F 
Sbjct: 301 VLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K+   +L+GD AFKLYDT+G P+D+ ++IL  + L+ +D   
Sbjct: 361 KTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A+++Q+ +ARA          +   +   +    T+F GY  L              
Sbjct: 420 FTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGYGKLA------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EIVE    GQ   ++  +TPFYA  GGQ  D G     
Sbjct: 467 ----------EESEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVITAQ 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D  K   G   H   V +G+ +T  ++ L +D +NR     NHSATHLLH AL
Sbjct: 517 DAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA  LPV T +M  +
Sbjct: 577 RTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVMTLD 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T  I    IVSE+ I 
Sbjct: 637 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEAGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T     ++    +++L   A  +K +   +  ++E + +E + L   + K 
Sbjct: 692 AGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSENEKL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G++++  + +
Sbjct: 752 KSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIASV-Q 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++  VT +   +  +A +L +  A ++GGGGG GRP+MAQ+GG N      A+  
Sbjct: 811 DGKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKNPAGIPDALKK 869

Query: 892 VASFLKK 898
            A  +++
Sbjct: 870 AAETVRE 876


>gi|260587849|ref|ZP_05853762.1| alanine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|260542114|gb|EEX22683.1| alanine--tRNA ligase [Blautia hansenii DSM 20583]
          Length = 892

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 516/905 (57%), Gaps = 48/905 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 19  VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 78

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD +
Sbjct: 79  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 134

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 135 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHGA-GPCGPCSEIYYDRGEKY 193

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QFE   +     L + +IDTGMGLER+A+V+Q+  
Sbjct: 194 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 253

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 254 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 313

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+E+F 
Sbjct: 314 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 373

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + +       L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 374 KTIDQGLNILSEMEAAMKAEGKTELSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEAG 432

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQR +AR           +   +   +    T+F+GYD L              
Sbjct: 433 FKAAMDEQREKARIARSTTNYMGADATVYDEIDVNVTTEFVGYDSL-------------- 478

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + EI E     Q+  V  +QTPFYA  GGQ GD G     
Sbjct: 479 ---------TCTSKITVLTTEDEITEALTEDQRGTVFVEQTPFYATMGGQQGDKGVITLG 529

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++ +G+L+T   + L +  + R     NHSATHLL  AL
Sbjct: 530 DAEFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQKAL 589

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H + +T+ EL ++E+ VN  I   LPVVT +M+ E
Sbjct: 590 KTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAAVEEIVNKEIQAALPVVTEVMSIE 649

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    I+SES I 
Sbjct: 650 EAKKVGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISESGIA 704

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG    ++    ++K   +A+ LK S   +  ++  +  E + L   +   
Sbjct: 705 AGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSENESL 764

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E +         +  V  ++  +++VD   L+ + D L++K+  G+++L  ++ 
Sbjct: 765 KAKMAQEAVGDVLNQVQDVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLASVA- 823

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S+L +VTE       +A +L +  A ++GGGGG GRP+MAQ+GG N +K  +A+  
Sbjct: 824 GGKVSLLAMVTEQAQKAGAHAGNLIKGMAAIVGGGGG-GRPNMAQAGGKNPDKVPEALEA 882

Query: 892 VASFL 896
            A+ L
Sbjct: 883 AANIL 887


>gi|331083851|ref|ZP_08332960.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403276|gb|EGG82836.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 879

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 518/905 (57%), Gaps = 48/905 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD +
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y+EDEEAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QFE   +     L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D    L     ++   +Y+ +    V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+E+F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + +       L+G+ AFKLYDT+G PLD+ ++IL  +G   ID   
Sbjct: 361 KTIDQGLNILSEMEAAMKAEGKTELSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEAG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQR +AR           +   +   +    T+F+GYD L              
Sbjct: 420 FKAAMDEQREKARIARSTTNYMGADATVYDEIDVNVTTEFVGYDSL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + EI+E     Q+  V  +QTPFYA  GGQ GD G     
Sbjct: 466 ---------TCTSKITVLTTEDEIIEALTEDQRGTVFVEQTPFYATMGGQQGDKGVITLG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++ +G+L+T   + L +  + R     NHSATHLL  AL
Sbjct: 517 DAEFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H + +T+ EL  +E+ VN  I   LPVVT +M+ E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAKVEEIVNKEIQAALPVVTEVMSIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    I+SES I 
Sbjct: 637 EAKKAGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISESGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG    ++    ++K   +A+ LK S   +  ++  +  E + L   +   
Sbjct: 692 AGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSENESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E +        ++  V  ++  +++VD   L+ + D L++K+  G+++L  ++ 
Sbjct: 752 KAKMAQEAVGDVLNQVQEVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLASVA- 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S+L +VTE       +A +L +  A ++GGGGG GRP+MAQ+GG N +K  +A+  
Sbjct: 811 GGKVSLLAMVTEQAQKAGAHAGNLIKGMAAIVGGGGG-GRPNMAQAGGKNPDKVPEALET 869

Query: 892 VASFL 896
            A+ L
Sbjct: 870 AANIL 874


>gi|21283297|ref|NP_646385.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49486451|ref|YP_043672.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297207662|ref|ZP_06924097.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300911744|ref|ZP_07129187.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|33301697|sp|Q8NW87|SYA_STAAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56749384|sp|Q6G8V1|SYA_STAAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21204737|dbj|BAB95433.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49244894|emb|CAG43355.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|296887679|gb|EFH26577.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300885990|gb|EFK81192.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 876

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 513/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++         +++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIENQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|138896126|ref|YP_001126579.1| alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267639|gb|ABO67834.1| Alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 892

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/912 (39%), Positives = 524/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 19  TSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRIC 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 79  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGF 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TV+ EDEEA+ +W+   GL  ++IIR+     FW + E GP GP +EIF+D+G
Sbjct: 135 DPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRLEGK--FWDIGE-GPSGPNTEIFYDRG 191

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 192 EAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 250

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG LP+
Sbjct: 251 ILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPS 310

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+
Sbjct: 311 NEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRT 370

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     G++
Sbjct: 371 EEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS 430

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    ++F+GYD L        
Sbjct: 431 -VDHAGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKDESRFVGYDEL-------- 479

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 480 ---------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQ 524

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+ATH
Sbjct: 525 GVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATH 584

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++PV  
Sbjct: 585 LLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDI 644

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 645 FYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIV 699

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R+LQ
Sbjct: 700 SESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQ 759

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         ++  V  ++  +   D  +L+++ D L++K+ + +I+
Sbjct: 760 RENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIV 819

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  + +  K  ++  VT+DL+ + ++A  L +  A   GGGGG GRP MAQ+GG + NK 
Sbjct: 820 LAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKDANKV 877

Query: 886 DQAIAGVASFLK 897
            +A+  V +++K
Sbjct: 878 GEALDYVETWVK 889


>gi|229828473|ref|ZP_04454542.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM
           14600]
 gi|229793067|gb|EEP29181.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM
           14600]
          Length = 921

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/912 (37%), Positives = 510/912 (55%), Gaps = 45/912 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH ++ S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 35  VNQLRRMYLDFFESKGHLVMKSFSLVPHNDDSLLLINAGMAPLKPYFTGQEIPPRRRVTT 94

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L+  
Sbjct: 95  CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKREAIHWSWEFLTRVLKLEPD 150

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177
           RLY T++ +D+EA+++W +  G++ D + R   +      DNFW     GPCGPCSEI++
Sbjct: 151 RLYPTIFIDDDEAYEIWTREVGVAPDHVYRFGKDPETGASDNFWEHGS-GPCGPCSEIYY 209

Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D+GE    G       EG+R++EIWN VF QF          L + +IDTGMGLER+A V
Sbjct: 210 DRGEKYGNGPDDVMGGEGDRFMEIWNNVFTQFNNDGHGNYTELAQKNIDTGMGLERLAVV 269

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+    ++ID  K +      ++G  YE N  + ++ R+I DH+RS++F+I+DGI+P+N
Sbjct: 270 MQDVETVFEIDTMKAIRDEVCALSGKTYEANASDDISIRLITDHIRSTTFMISDGIMPSN 329

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + R+LG +   M  L   +  E    YPEL + +  I   L  E
Sbjct: 330 EGRGYVLRRLIRRASRHGRMLGISGEFMARLADVVIRESRDGYPELAEKQEFIRRVLTEE 389

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + +F  T+D+GL +L  +   L    + +L+G  AF+LYDT+G P+D+  +IL  +G+  
Sbjct: 390 ERKFNATIDQGLAMLAQLEDQLSARGERVLSGADAFRLYDTYGFPVDLTAEILEEKGMTY 449

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            D   F  A+EEQR++AR           E   +   +   ++ F+GYD L  S      
Sbjct: 450 -DREGFAAAMEEQRAKARGARKASNYMGKEATVYDDIDNSISSSFVGYDKLEASS----- 503

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                      ++   + +  A  + GE+V+    G +  V+ D+TPFY   GGQLGD+G
Sbjct: 504 ----------KISVLTTEVNPAEDKYGELVDALTDGSRGTVIVDETPFYGTMGGQLGDSG 553

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ +      G   H   +  G+L+    + L +D   R  ++ NHSATHL
Sbjct: 554 LIETAEGTFRVDETIHLLGGRIGHVGQMISGMLKVGDRVTLQVDADRRANIARNHSATHL 613

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD  H   +++ E++ +ED VN+ IA ++PVVT 
Sbjct: 614 LHRALREVLGDHVQQKGSYVDDKKLRFDFVHFSAMSTEEIRKVEDLVNERIAADIPVVTE 673

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM++EDA  +GA AL G KY D VRVV +     G +S+ LCGGTHV  TG+I    ++S
Sbjct: 674 IMSQEDAKKTGAMALFGEKYGDEVRVVEM-----GDYSTELCGGTHVGRTGKIQAFKVIS 728

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E    AG+RRIEA+TG    ++    + +L   A+  K    ++V ++  + EE + L+ 
Sbjct: 729 EVGSSAGVRRIEALTGPAVFAYYEDIERELNEAATAAKTKPSDLVEKIGHMQEEIKGLEA 788

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K     E L     +  +I  V F++  +  VD   L+ + D L+ K+  GI++L
Sbjct: 789 ELESMKAAAAKEALGNVEDAVKEIKGVKFLAKALEGVDMNGLRDLGDQLKAKLGEGIVLL 848

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              + + K  ++   TE       +A +L +  A ++GGGGG GRP+MAQ+GG N     
Sbjct: 849 AS-ANDGKVVLMATATEGAQKAGAHAGNLIKGIAGLVGGGGG-GRPNMAQAGGKNPAGIP 906

Query: 887 QAIAGVASFLKK 898
            A+A     L++
Sbjct: 907 AALAEAERVLEE 918


>gi|148244942|ref|YP_001219636.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|205830283|sp|A5CVU0|SYA_VESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146326769|dbj|BAF61912.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 865

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/902 (40%), Positives = 533/902 (59%), Gaps = 44/902 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL++F+  GH +  S+SLIP ND TL+F N+GMVPFK++F+G EK  Y   
Sbjct: 1   MKTAQIRQKFLDYFESKGHIIESSASLIPHNDKTLLFVNAGMVPFKDVFSGIEKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LTKE +L 
Sbjct: 61  VSVQRCARAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHYAWEFLTKELNLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           ++ L+++V+D+D EA  +W    G   ++I R    DNFW M +TGPCGP SEIF+D GE
Sbjct: 121 KKNLWVSVFDQDNEAEDIWVNEIGFPKNRISRCGAKDNFWQMGDTGPCGPSSEIFYDHGE 180

Query: 182 CIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            I GG PG ++E+G+RYIEIWNLVF +F++Q       L    +DTGMGLER+  VLQ K
Sbjct: 181 HIAGGPPGHANEDGDRYIEIWNLVFTEFDKQEDGYLKPLAVPCVDTGMGLERLVAVLQHK 240

Query: 241 TNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            NNYD D F++L++A   +T       +N  + RVI DH+RS++F+I DG++P+NEGRGY
Sbjct: 241 NNNYDTDGFQNLVKAVVNLTPKFNNIKDNNASVRVITDHIRSAAFMIVDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + +   +G  +     L   L  E    YPEL QA   +E+ L+ E++RF 
Sbjct: 301 VLRRIIRRGIRHGHKMGIGKVFFYRLASILALEFKDVYPELEQALSKVEKVLKREEQRFS 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTLD+G+ +L+ V+++    E +NG + FKLYDT+G P+D+  DI   R L  ID+  F 
Sbjct: 361 KTLDQGMSILEEVITNFKGSE-INGKIVFKLYDTYGFPVDLTSDIARERNLT-IDMSGFE 418

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR RAR  S         KI     +    T+F+GY  L+               
Sbjct: 419 VEMTKQRDRARQAS-------DFKISEKGVDIAERTEFLGYKQLKN-------------- 457

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S+++AI+   E+VE+   G    VV  Q+ FYAE+GGQ+GD G      +
Sbjct: 458 ---------VSLIQAIINNNELVEKIEVGDHGIVVLAQSSFYAESGGQIGDKGILSNMQV 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++    K+  G F HH ++ +G+L+   ++   +D ++R+ ++ NHSATHLLH AL  
Sbjct: 509 EFRVDHTNKQKSGAFEHHGVLNKGVLKVSDAVQANVDKKSRKCIARNHSATHLLHAALHI 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG  V Q GS +  + LRFD ++ K I  ++L+ IE  VN  I  N  V T I N E A
Sbjct: 569 VLGKAVMQKGSLVGSEKLRFDFSYDKVIVKSDLERIESIVNRKILGNTKVYTDITNIEGA 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L G KY D VRV+++   +    S  LCGGTHV+  G+I L  I+SESS+ AG
Sbjct: 629 KKKGAMTLFGKKYGDTVRVLTMGKNE---FSVELCGGTHVNQLGDIGLFRIISESSVSAG 685

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KR 777
           +RRIEA+TG  A          L  +A   + S   VVG+V ++ ++ ++L+   A  ++
Sbjct: 686 VRRIEALTGYDAYQFDNRIQNSLNKIAQMTRSSNTEVVGKVTQLIKQQKELEKQIATFQK 745

Query: 778 KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           K+  N  D   +   ++  +  +S ++  V SK+L++++D L+ K+ S +I+L  +  + 
Sbjct: 746 KIANNQGDDLIVQAQEVKGIKLLSTVVEGVTSKDLRNIVDKLKDKLSSAVIVLAVVIND- 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S++  VT+DL  ++ A  +    AK + GG G GR  MAQ GG       +A+A V S
Sbjct: 805 KVSLVTGVTKDLTKQYQARKILNHVAKQI-GGKGDGRSDMAQGGGTKPECLIKALASVKS 863

Query: 895 FL 896
            +
Sbjct: 864 LI 865


>gi|205830105|sp|A4IR80|SYA_GEOTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 878

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/912 (39%), Positives = 524/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TV+ EDEEA+ +W+   GL  ++IIR+     FW + E GP GP +EIF+D+G
Sbjct: 121 DPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRLEGK--FWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ+   N++ DLF  +I+A+EQ+ G +Y  + N  V  +VI DH+R+ +F + DG LP+
Sbjct: 237 ILQDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+
Sbjct: 297 NEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRT 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    K    ++ G+ AF+LYDT+G PL++ ++     G++
Sbjct: 357 EEERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    ++F+GYD L        
Sbjct: 417 -VDHAGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKDESRFVGYDEL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           VSS V AI++ G+ VEE  +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 466 ---------------VVSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+     + DVQK   G  +H  +VERG ++        +D   R Q+  NH+ATH
Sbjct: 511 GVFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +++PV  
Sbjct: 571 LLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 631 FYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E R+LQ
Sbjct: 686 SESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQ 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         ++  V  ++  +   D  +L+++ D L++K+ + +I+
Sbjct: 746 RENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  + +  K  ++  VT+DL+ + ++A  L +  A   GGGGG GRP MAQ+GG + NK 
Sbjct: 806 LAAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKDANKV 863

Query: 886 DQAIAGVASFLK 897
            +A+  V +++K
Sbjct: 864 GEALDYVETWVK 875


>gi|86606529|ref|YP_475292.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123738092|sp|Q2JTG8|SYA_SYNJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86555071|gb|ABD00029.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 883

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/907 (39%), Positives = 525/907 (57%), Gaps = 50/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR  FL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF G + P Y  VT
Sbjct: 6   SGAAIRQAFLDFYAQRGHQVLPSASLVP-EDPTVLLTIAGMLPFKPIFLGHQDPQYPRVT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F L  
Sbjct: 65  TAQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWELVTEVFGLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF LW+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 121 ERLVVSVFREDEEAFALWRDAIGIPPHRIRRMGEEDNFWAAGPTGPCGPCSEIYYDFKPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G       +  R++EI+NLVFM+  + ++     L + +IDTG+GLER+A VLQ   N
Sbjct: 181 L-GDEQIDLGDDSRFLEIYNLVFMELNRDSEGRLTPLARQNIDTGLGLERLAQVLQGVPN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++Q + ++  + Y        V+ +VI DH R+   LIADG++P+N  RGY
Sbjct: 240 NYETDLIFPIVQKAAEIARVDYFQASPEQKVSLKVIGDHARAVMHLIADGVIPSNVDRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG  EP  + ++        +AYPE+ + + +I+  L+ E+E+F 
Sbjct: 300 VLRRLIRRMVRHGRLLGIGEPFTLPVVETAIQLAEAAYPEVREREAVIKAELQREEEQFL 359

Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           KTL+RG  LL  + +++   G  + ++G  AFKL+DT+G PL++ Q+I   RG + +D+ 
Sbjct: 360 KTLERGERLLFDLFANVTASGAPKQISGADAFKLFDTYGFPLELTQEIAQERGFS-VDVQ 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F Q +E+QR RARA    L   T +     L E    T+F+GY                
Sbjct: 419 GFEQEMEKQRQRARAAHQTLDV-TAQGSLDELAEFLIETEFLGYS--------------- 462

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +    +V+A++ +G+ V +  +GQ V+VV D+TPFYAE+GGQ+GD G   G
Sbjct: 463 --------QSSARGVVEALLVEGKSVPQVEAGQSVQVVLDRTPFYAESGGQIGDRGYLAG 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+ +++ DVQK+ + +FVH   VERGILR    +   ID   RR+   +H+ATHLL  A
Sbjct: 515 DGVLVRVEDVQKRGD-LFVHFGWVERGILRVGDPVQAQIDLACRRRAQAHHTATHLLQAA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++   +SQ GS +  D LRFD T S+P+T  EL+ +ED VN  IA+  P    IM  
Sbjct: 574 LKKVVDPSISQAGSLVAFDRLRFDFTLSRPLTPEELQQVEDLVNTWIAEAHPAQVSIMPL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A A GA A+ G KY   VRVV          S  LCGGTHVS+T EI L  I+SES +
Sbjct: 634 AEAKARGAIAMFGEKYGAEVRVVDFPG-----VSMELCGGTHVSNTAEIGLFKIISESGV 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            AGIRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q  L  
Sbjct: 689 AAGIRRIEAVAGPAVLEYLNERDSVVRELSAQFKAKPQEIPERVAALQAELKAAQRALEE 748

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831
           A+ +L L   +    +   V  +  + +E+     + LK+  + L  K+  G ++L  + 
Sbjct: 749 ARSQLALLQAERLLPQAVAVGNLQILAAELGSTPPEALKTAAEHLLHKLGEGAVVLGSVP 808

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  K S++   +  +      A       AK+ GGGGG GRP++AQ+GG    K  QA+ 
Sbjct: 809 EAGKVSLVAAFSPAVQKLGLKAGSFIGEIAKLTGGGGG-GRPNLAQAGGKQPEKLAQALQ 867

Query: 891 GVASFLK 897
                L+
Sbjct: 868 VAQERLQ 874


>gi|229105022|ref|ZP_04235676.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678399|gb|EEL32622.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 880

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYCNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHKGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S + A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L    ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     + E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++LV +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLVSV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|258424044|ref|ZP_05686926.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257845665|gb|EEV69697.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635]
          Length = 877

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 7   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 67  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 123 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 179

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 180 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 240 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 300 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 360 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 419 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 465 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 514 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 574 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 634 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV S   VV ++ ++ +E + L  Q
Sbjct: 689 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSNDQVVDKLTQLQDEEKALLKQ 748

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 749 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 809 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 866

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 867 LSFIKDYIK 875


>gi|298694898|gb|ADI98120.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133]
          Length = 876

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 513/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++    +    +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKETTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|331084749|ref|ZP_08333837.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410843|gb|EGG90265.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 879

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/907 (39%), Positives = 517/907 (57%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AIQ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVVGLDAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +DEEAF++W K  G+ A++I +    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     +   + Y  + +  V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 241 SIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E+++F 
Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKEFIFNVLTQEEDKFD 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + +  +++L+G+ AFKLYDT+G PLD+ ++IL  +G  GID   
Sbjct: 361 KTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A+E+QR +AR           +   +   +    T+F+GYD L              
Sbjct: 420 FQAAMEKQRVQAREARKETNYMGADATVYDEIDPSVTTEFVGYDTL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EI E    GQ+  +  ++TPFYA  GGQ GDTG     
Sbjct: 466 ---------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTGIIHTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + +  K   G F H   V +G+  T  ++ L +  + R     NHSATHLL  AL
Sbjct: 517 DAEFAVEETIKLLGGKFGHIGRVTKGMFGTGDTVTLEVKSKERLNTCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H   +T  E++++E  VN+ IA+N PVVT +MN E
Sbjct: 577 KTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTREEIEAVEALVNEEIAKNNPVVTEVMNVE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY + VRVV++     G  S  LCGGTHVS+TG I    IVSES + 
Sbjct: 637 EAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG    ++   Q++KL   A  LK +  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHSEIESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +   E +        +I  V  ++  + +VD   L+ + D L++K+  G++++   + 
Sbjct: 752 KSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVIASAA- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   TE  L +  +A +L +  A ++GGGGG GRP+MAQ+GG N    D A++ 
Sbjct: 811 GGKVSLMATATEGALKKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKNPEGIDAALSK 869

Query: 892 VASFLKK 898
               L +
Sbjct: 870 AKEVLAE 876


>gi|253733131|ref|ZP_04867296.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728887|gb|EES97616.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130]
 gi|329733217|gb|EGG69554.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 877

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 7   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 67  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 123 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 179

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 180 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 240 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 300 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 360 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 419 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 465 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 514 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGTTVSAEVNQNDRRDIQKNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 574 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 634 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 689 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 748

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 749 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 809 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 866

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 867 LSFIKDYIK 875


>gi|160880749|ref|YP_001559717.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|205829959|sp|A9KMW7|SYA1_CLOPH RecName: Full=Alanyl-tRNA synthetase 1; AltName: Full=Alanine--tRNA
           ligase 1; Short=AlaRS 1
 gi|160429415|gb|ABX42978.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 879

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/905 (38%), Positives = 510/905 (56%), Gaps = 46/905 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH  L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMYLDFFESKGHLKLNSFSLVPQNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLSGD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y ED+EAF +W K  G++ ++I R+   DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYLEDDEAFDIWNKEVGIAPERIFRMGKADNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +R+IE+WN VF QF          L   +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGDPNCTVGCECDRFIEVWNNVFTQFNSDGNGNYEELENKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +DID  K +     ++   +Y  +    ++ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 TLFDIDTMKAIRDHVCKMANAEYKVDPKKDMSIRLITDHIRSVTFMTSDGIIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +  E    YPEL + K  I + L  E+E+F 
Sbjct: 301 VLRRLLRRAARHGRLLGIQGKFLAELSKTVIAESKDGYPELEEKKEYILKVLTIEEEKFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   L     + LNG+ AFKLYDT+G PLD+ ++IL  +G + ID   
Sbjct: 361 KTIDQGLSILSEMEEALVSNGTKTLNGEDAFKLYDTYGFPLDLTKEILEEKGFS-IDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A++ QR  AR+          +   +   +    + F+GYD                
Sbjct: 420 FKKAMQVQRETARSARAVTNYMGADASIYDEIDPAITSNFVGYDRTSH------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + ++ +E V GQ   ++ D+TPFYA  GGQ  D G  +G 
Sbjct: 468 -----------TSKISVLTTETDLTDEVVGGQTATIIVDETPFYATMGGQTADIGFIVGK 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H   V +G  +   ++ LTID Q R+ +  NHSATHLL  AL
Sbjct: 517 DAEFEVEDTIKLKGGRVGHLGTVTKGSFKVGETVTLTIDTQKRQAIGKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LGSHV Q GS +T + LRFD TH   +T  E+  +E  VN+ IA+N+PVVT +M+ E
Sbjct: 577 RNVLGSHVEQAGSFVTSERLRFDFTHFSALTKEEIAKVEAMVNEEIAKNVPVVTDVMSVE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA  SGA AL G KY D VRVV++     G  S  LCGGTHV++TG I +  I+SE+ I 
Sbjct: 637 DAKKSGAMALFGEKYGDSVRVVTM-----GDFSKELCGGTHVANTGSITVFKILSEAGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEAIT      +    +E+L   A   K    ++V R+E + EE +     + K 
Sbjct: 692 AGVRRIEAITSNAVFEYYKSMEEELHEAAKVAKTEPASLVKRIESLQEELKTALSENEKL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L    L        ++  V  ++  +++ D   L+++ D L++K+   +I+L   S+
Sbjct: 752 KAKLANNSLGDVMNQVVEVKGVKLLASKVTDADMNGLRNLGDQLKEKLGECVILLASASE 811

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +K   + +     +    +A +L +  A ++GGGGG GRP+MAQ+GG N +  D AI   
Sbjct: 812 DKVNLIAMATDGAMAKGAHAGNLIKEVAVLVGGGGG-GRPNMAQAGGKNPSGIDAAIEKA 870

Query: 893 ASFLK 897
            S ++
Sbjct: 871 VSVVE 875


>gi|289578243|ref|YP_003476870.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289527956|gb|ADD02308.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 877

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/907 (39%), Positives = 539/907 (59%), Gaps = 51/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + +TT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFS G YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL +++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLERMAT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 ETIDQGLTILQDYINELKLQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEVGI-VVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      S   + I+ +L +    T+F+GY                 
Sbjct: 420 YTKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGY----------------- 460

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                  T G +S V AIV++ E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    +
Sbjct: 461 ------TTYGCNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLENE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ D  KK    FVH   +ERG++     +   ID  +R   + NH+ATHLLH AL
Sbjct: 515 NVLIRVKDC-KKIGDKFVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       +
Sbjct: 574 KEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTYD 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI L  +VSES++ 
Sbjct: 634 EALKEGAVALFTEKYGDKVRVVRI-----DDYSVELCGGTHVKNTNEIGLFKVVSESAVG 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  +       + 
Sbjct: 689 AGLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQL 748

Query: 778 KLQLN---VEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K+++     + L    I+   +  +   I + DS+ LK++ D L+ K+++ +++L   + 
Sbjct: 749 KIKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASSTL 808

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E KA  + + T+D++ +  N   + + + K +  G GGGRP +AQ  G N +K  +A+  
Sbjct: 809 E-KAIFVGMATKDVVQKGINMGAVIKEACK-VSEGNGGGRPDIAQGTGKNPSKVKEALDK 866

Query: 892 VASFLKK 898
               +K+
Sbjct: 867 AIEVVKE 873


>gi|283470895|emb|CAQ50106.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398]
          Length = 877

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 7   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 67  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMGME 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 123 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 179

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 180 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 240 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 300 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 360 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 419 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 465 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 514 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 574 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 634 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 689 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 748

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 749 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 809 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 866

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 867 LSFIKDYIK 875


>gi|323439035|gb|EGA96767.1| alanyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442822|gb|EGB00447.1| alanyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 877

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 7   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 67  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 123 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 179

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 180 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 240 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 300 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 360 ERFHETLEDGLAILNELIKKAKVTTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 419 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 465 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 514 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 574 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 634 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 689 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 748

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 749 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 809 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 866

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 867 LSFIKDYIK 875


>gi|161509845|ref|YP_001575504.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294848647|ref|ZP_06789393.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|304380785|ref|ZP_07363452.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|205830218|sp|A8Z4F6|SYA_STAAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160368654|gb|ABX29625.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|269941104|emb|CBI49490.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus TW20]
 gi|294824673|gb|EFG41096.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|302751447|gb|ADL65624.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340661|gb|EFM06594.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|320140495|gb|EFW32349.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144034|gb|EFW35803.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314293|gb|AEB88706.1| Alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131]
 gi|329728452|gb|EGG64889.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 877

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 7   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 67  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 123 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 179

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 180 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 240 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 300 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 360 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 419 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 465 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVADTGIV 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 514 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 574 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 634 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 689 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 748

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 749 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 809 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 866

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 867 LSFIKDYIK 875


>gi|224500670|ref|ZP_03669019.1| alanyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 879

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 511/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR+RARA    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKR 746

Query: 773 IHAKR--KLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     KL             +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPKEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|224476716|ref|YP_002634322.1| alanyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421323|emb|CAL28137.1| putative alanyl-tRNA synthetase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 876

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/909 (37%), Positives = 508/909 (55%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  F+++F++ GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQNFIDYFKEQGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREIPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT      ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSDRWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ LW  + GL   +IIRI    NFW + E GP GP +EIF+D+G 
Sbjct: 122 PEKLYVTIHPEDTEAYDLWHDVIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGP 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA++ 
Sbjct: 179 EYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLERMASIA 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  +I+  E+++G KY  + +  V  +VI DH+R+ +F I DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIIEDVEKISGKKYQEDADQDVAFKVIADHIRTIAFAIGDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ L   EP M  L+ A+   M   YPE+ Q    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQSLDINEPFMYQLVDAVADIMEPYYPEVKQKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++        ++NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEEGLAILNDMIKDAKAGGNVINGKDAFKLYDTYGFPIELTEEIADNEGLT-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK     + F GYD++  +        
Sbjct: 418 MKTFEAEMQKQRDRARQARQKSESMQIQSEV--LKNITTQSTFTGYDVMDQN-------- 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  I+  GE VE+A +G  V  V + TPFYA +GGQ+ D G  
Sbjct: 468 ---------------TKITDIIVNGERVEKADAGDTVFFVLEATPFYAVSGGQVADQGTV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   +++T+V     G  +H   V+ G +     +  ++++ +RR +  NHSATHLLH
Sbjct: 513 SNENFEIEVTEVTNAPNGQNLHKGAVQFGQVAEGAEVEASVNHADRRDIKKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +  D LRFD +H  P+T  EL+ +E  VN+ I + + V  + M
Sbjct: 573 AALKEVLGDHVNQAGSLVEGDRLRFDFSHFGPVTEEELEQVERRVNEEIWKGIDVTIKEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A ASGA AL G KY D VRVV     D    S  LCGG HV +T EI L  IVSES
Sbjct: 633 PIEEAKASGAMALFGEKYGDVVRVV-----DMSPFSIELCGGIHVQNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLI 773
              AG+RRIEA+TG+ A  +L     K K++   +K  Q   V  +V ++ +  ++L   
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEEIQNKFKAVKHQVKAKQDEQVAEKVSQLIDNEKQLHKQ 747

Query: 774 HAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +R      L++   D    +I  +  ++  +   ++K L+  MD  + K+Q  +I+L 
Sbjct: 748 LEQRNQEITALKMGSIDDQIEEINGLKVLALQVDAENAKALRQTMDDFKSKLQDSVIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               + K +++  V +   D+  A DL +  A V+ GG GGGRP MAQ GG   +K  +A
Sbjct: 808 SDVGD-KVALVATVPKSETDKVKAGDLIKNMAPVV-GGKGGGRPDMAQGGGSEPSKITEA 865

Query: 889 IAGVASFLK 897
           +  + +++K
Sbjct: 866 LQFIKNYIK 874


>gi|160939113|ref|ZP_02086464.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438076|gb|EDP15836.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC
           BAA-613]
          Length = 887

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/907 (37%), Positives = 509/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P    VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI   W+ LT    LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTDVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ A++I +    DNFW     GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLDDDEAFGIWNKEIGIPAERIFKFGKEDNFWEHGS-GPCGPCSEVYYDRGEAF 188

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RYIE+WN VF QF+         L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    Q+   +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCQLAHTEYQKDHETDVSLRIVTDHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     +  L   +       YPEL + + +I + L  E+E+F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAGLSETVIELSKDGYPELEEKQAMIFKVLSEEEEKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K  ++ L+G  AFKLYDT+G PLD+ ++IL  RG   +D   
Sbjct: 369 KTIDQGLSILGEMQDEMQKTGNKCLSGANAFKLYDTYGFPLDLTKEILEERGCT-VDEDG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQ+ +AR           +   +   +    T+FIGYD L              
Sbjct: 428 FAAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSVTTEFIGYDRL-------------- 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + E+V+    GQK  ++ +QTPFY   GGQ GDTG    +
Sbjct: 474 ---------TADSRVTVLTTEEELVQALTDGQKGTIIVEQTPFYGTMGGQQGDTGVISNE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++ +G+ +   ++ L++   NR     NHSATHLL  AL
Sbjct: 525 NGAFKVEDTIHLQGGKVGHVGVMTKGMFQVGENVTLSVCAHNRALTCKNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS +    LRFD TH   +T  E+K +E+ VN  I  +LPVVT++M  E
Sbjct: 585 RKVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPDEIKKVEELVNQEIQASLPVVTQVMTLE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D+VRVV +     G  S+ LCGGTHV +TG I    I+SE+ I 
Sbjct: 645 EAKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVPNTGTIAYFKIISEAGIA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    H    +E+L+  A   K +   +  +++ + EE + L   + K 
Sbjct: 700 AGVRRIEALTSEGLMKHYQEVEEELQEAARTAKTTPSALTSKIQSLLEEIKTLHSENEKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  +  ++  ++ VD   ++++ D L+ K+  G+I+L    +
Sbjct: 760 KSKLANDSLGDVMSQVKEVNGLKVLAARVAGVDMNGMRNLGDQLKDKLGEGVIVLAC-EQ 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++   T+    +  +A +L +  A ++GGGGG GRP+MAQ+GG N    D A+  
Sbjct: 819 DGKVNLMATATDSAQKKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKNPAGIDDALKK 877

Query: 892 VASFLKK 898
               +++
Sbjct: 878 AVETVEE 884


>gi|121535965|ref|ZP_01667759.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305457|gb|EAX46405.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 869

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/906 (39%), Positives = 519/906 (57%), Gaps = 53/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF    H +LPS+SLIP NDPTL+   +GM PFK  FTG+ KP +  +
Sbjct: 1   MTGNELRKKFLQFFASKDHLVLPSASLIPENDPTLLLIGAGMAPFKPFFTGKMKPPHPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR G    D++NVGRT RHHTFFEMLGNFSFG YFK  AI  +W+ +T+  +L 
Sbjct: 61  ATCQKCVRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKREAITWSWEFITEHLNLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+IT++ ED+EAF++W K  G+  D+I+R+   DNFW +   GPCGPCSEI  D GE
Sbjct: 117 KDKLWITIHTEDDEAFEIWHKEVGVPVDRIVRL--EDNFWEIG-PGPCGPCSEIHIDLGE 173

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P        +RY+EIWNLVF Q+++  +     L K +IDTG GLER+A+VLQ 
Sbjct: 174 ERGCGKPDCRVGCSCDRYLEIWNLVFTQYDRDEEGNYTPLAKKNIDTGAGLERIASVLQN 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +N++ DL   +I+ + +V G+ Y       V+ +VI DH RS + +IADG+LP+NEGR
Sbjct: 234 KRSNFETDLLFPIIEHTAKVAGVTYGESAKTDVSLKVIADHGRSLTIMIADGVLPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + RLLG  +P +  ++  +       YPE+   K  I++ ++ E+ER
Sbjct: 294 GYVLRRILRRAVRHGRLLGIDKPFLADIVDVVANIFAEPYPEINDKKAYIKKVVQLEEER 353

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL +G+ LL+  +  L +    +L+G   FKLYDT G P ++ Q+IL    +  +D 
Sbjct: 354 FNATLAQGMELLNSHIRVLKESGKTVLDGATGFKLYDTFGFPWELTQEILAEHDME-LDR 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+QA++EQR RARA                L      TQ + YD              
Sbjct: 413 AGFDQAMDEQRQRARAARQENEERVVVPDLSGLV-----TQELKYD-------------- 453

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+ V  ++Q G++VE A  GQ+V ++ D TPFYAE GGQ+GD+G   
Sbjct: 454 ---------PQAESARVVLVLQDGKVVEAAHDGQEVALILDVTPFYAEGGGQVGDSGTLT 504

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + +   +K  +G   H   V  G ++    + + +D   RR  S NH+ATHLLH 
Sbjct: 505 AQYGTVAVVTARKLPDGTIYHVGSVTEGTIKPGDMVKIAVDAARRRDASRNHTATHLLHA 564

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS + PD LRFD +H  P+T  +L  +E+ VN++I +N+ V      
Sbjct: 565 ALKKVLGEHVNQAGSYVGPDRLRFDFSHFAPVTVEQLAEVENMVNEVILRNIAVGRIETT 624

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +E A   GA AL G KY +RV VV +        S  LCGGTHVSST EI    IVSE+ 
Sbjct: 625 QELAREMGATALFGEKYGERVSVVII-----DDFSKELCGGTHVSSTAEIGQFKIVSETG 679

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEA+TG  A  ++  ++E L++ A  LK    ++VGR++ +    + L+   A
Sbjct: 680 IGSGIRRIEAVTGYAALEYIRSREEILQAAALALKSRPEDLVGRIDGVLARVKDLEKELA 739

Query: 776 KRKLQL---NVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L    VEDL  +K  I  V  ++  +   D  +L+S  D ++ +++SG++ L  +
Sbjct: 740 ALKTKLAKFAVEDLLANKKEINGVALVAGQVDAADMDDLRSTADLVRDRLRSGVVALGAV 799

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + EK   V++   + +    +A ++ +  AKV GGGGG GRP MAQ+GG    K   A+ 
Sbjct: 800 TGEKVNFVVMATADAVARGVHAGNIIKEMAKVAGGGGG-GRPDMAQAGGKQPAKLADALR 858

Query: 891 GVASFL 896
                +
Sbjct: 859 IAQEVM 864


>gi|229098860|ref|ZP_04229796.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229117885|ref|ZP_04247247.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665542|gb|EEL21022.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684533|gb|EEL38475.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 880

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/916 (38%), Positives = 533/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGEAYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDHKGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S + A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L    ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     + E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 NVEISQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++LV +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLVSV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|57650500|ref|YP_186513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161149|ref|YP_494270.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195427|ref|YP_500231.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151221731|ref|YP_001332553.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|221141112|ref|ZP_03565605.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258450555|ref|ZP_05698617.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|284024675|ref|ZP_06379073.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|71153554|sp|Q5HFE4|SYA_STAAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122539371|sp|Q2FXV9|SYA_STAA8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123485547|sp|Q2FGA8|SYA_STAA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830217|sp|A6QHF9|SYA_STAAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57284686|gb|AAW36780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127123|gb|ABD21637.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202985|gb|ABD30795.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150374531|dbj|BAF67791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|257861713|gb|EEV84512.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|315198685|gb|EFU29013.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
          Length = 876

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|297544523|ref|YP_003676825.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842298|gb|ADH60814.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 877

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/907 (39%), Positives = 539/907 (59%), Gaps = 51/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + +TT
Sbjct: 6   MNEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFS G YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL +++I+R+   DNFW +  TGPCGPCSEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLERMAT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 ETIDQGLTILQDYINELKLQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEVGI-VVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      S   + I+ +L +    T+F+GY                 
Sbjct: 420 YTKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGY----------------- 460

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                  T G +S V AIV++ E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    +
Sbjct: 461 ------TTYGSNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLENE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ D  KK    FVH   +ERG++     +   ID  +R   + NH+ATHLLH AL
Sbjct: 515 NVLIRVKDC-KKIGDKFVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       +
Sbjct: 574 KEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTYD 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI L  +VSES++ 
Sbjct: 634 EALKEGAVALFTEKYGDKVRVVRI-----DDYSVELCGGTHVKNTNEIGLFKVVSESAVG 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  +       + 
Sbjct: 689 AGLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQL 748

Query: 778 KLQLN---VEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K+++     + L    I+   +  +   I + DS+ LK++ D L+ K+++ +++L   + 
Sbjct: 749 KIKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASSTL 808

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E KA  + + T+D++ +  N   + + + K +  G GGGRP +AQ  G N +K  +A+  
Sbjct: 809 E-KAIFVGMATKDVVQKGINMGAVIKEACK-VSEGNGGGRPDIAQGTGKNPSKVKEALDK 866

Query: 892 VASFLKK 898
               +K+
Sbjct: 867 AIEVVKE 873


>gi|302333292|gb|ADL23485.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 876

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPSEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         ++G  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKVTTNEISGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITFASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|16803544|ref|NP_465029.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|47097201|ref|ZP_00234765.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|224501556|ref|ZP_03669863.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|254898330|ref|ZP_05258254.1| alanyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912178|ref|ZP_05262190.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936506|ref|ZP_05268203.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|20532249|sp|Q8Y722|SYA_LISMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|16410933|emb|CAC99582.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|47014415|gb|EAL05384.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609100|gb|EEW21708.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590151|gb|EFF98485.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 879

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR+RARA    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|282908937|ref|ZP_06316755.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911255|ref|ZP_06319057.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|295428195|ref|ZP_06820827.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297590838|ref|ZP_06949476.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|282324950|gb|EFB55260.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327201|gb|EFB57496.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|295128553|gb|EFG58187.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575724|gb|EFH94440.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|312437914|gb|ADQ76985.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 877

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 7   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 67  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 123 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 179

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 180 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 240 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 300 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 360 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 419 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 465 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 514 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 574 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 634 DIVSAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   N VV ++ ++ +E + L  Q
Sbjct: 689 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQLQDEEKALLKQ 748

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 749 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 809 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 866

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 867 LSFIKDYIK 875


>gi|291550263|emb|CBL26525.1| alanyl-tRNA synthetase [Ruminococcus torques L2-14]
          Length = 879

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/896 (38%), Positives = 500/896 (55%), Gaps = 48/896 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY++D+EAF++W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYEDDDEAFEIWNKKMGIPAERIFRFGKEDNFWEHGS-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF          L + +IDTGMGLER+A ++Q+  
Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      ++G +Y  +    V+ RV+ DH+RS +F+++DGILP+N GRGY
Sbjct: 241 SMFDIDTMKALRDHVCNLSGKQYGIDHETDVSLRVVTDHIRSVTFMVSDGILPSNSGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     ++ L   +       YPEL + K  I   +  E+  F 
Sbjct: 301 VLRRLLRRACRHGKLLGIDGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K+  ++L+G+ AFKLYDT+G P+D+  +IL  +GL   D   
Sbjct: 361 KTIDQGLAILADMEAEMEKNGEKVLSGENAFKLYDTYGFPVDLTSEILEEKGLTY-DEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A EEQR+++            E   +   +    T+F+GYD L              
Sbjct: 420 FKKAQEEQRAKSEGTFGTHSYTGKEVSVYDQLDAALETEFVGYDNL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V A+  + E+V+    G+K  ++ +QTPFYA  GGQ  D G     
Sbjct: 466 ---------TFDSKVTALTTETEVVDALSDGEKGTIIVEQTPFYATMGGQEADKGVIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D    A     H   V +G+++   ++ L +D +NR     NHSATHLL  AL
Sbjct: 517 DGEFVVEDCIHLAGTKVGHVGHVVKGMIKIGDAVTLEVDAKNRALTERNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +  D LRFD TH   +T  ELK +E+ VN+ IA  L VVT+ +  E
Sbjct: 577 RTVLGSHVEQAGSFVNADRLRFDFTHFSAVTPEELKKVEEIVNEQIANALAVVTKNLPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV     D    S   CGGTHV +T EI  L I+SES + 
Sbjct: 637 EARKTGAQALFGEKYGDVVRVV-----DMSGFSVEFCGGTHVKNTSEITALKIISESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +   ++    +  LK  A  +K +  N+  ++  +  E + L+      
Sbjct: 692 AGVRRIEALTSEGLMNYYAEMERLLKEAAQLVKATPENLAEKITHLQAENKSLKGEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++             ++  V  ++  +  VD   L+ + D L++K+  G+++L     
Sbjct: 752 KSKMAQSAAGDILDQVKEVKGVKLLAAQLDGVDMNGLRDLGDQLKEKLGEGVVVLAS-GN 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + K S++   T+  +    +A +L +  A ++GGGGG GRP+MAQ+GG N      
Sbjct: 811 DGKVSLMATATDGAMKQGAHAGNLVKAIAGLVGGGGG-GRPNMAQAGGKNPAGIPD 865


>gi|49483863|ref|YP_041087.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425743|ref|ZP_05602167.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428403|ref|ZP_05604801.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431041|ref|ZP_05607420.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433727|ref|ZP_05610085.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436642|ref|ZP_05612686.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282904199|ref|ZP_06312087.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282906025|ref|ZP_06313880.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282914423|ref|ZP_06322209.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919393|ref|ZP_06327128.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282924718|ref|ZP_06332386.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|283958379|ref|ZP_06375830.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503498|ref|ZP_06667345.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510515|ref|ZP_06669221.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293531055|ref|ZP_06671737.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|56749413|sp|Q6GG85|SYA_STAAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|49241992|emb|CAG40689.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257271437|gb|EEV03583.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275244|gb|EEV06731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278244|gb|EEV08886.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281820|gb|EEV11957.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410]
 gi|257283993|gb|EEV14116.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|282313553|gb|EFB43948.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317203|gb|EFB47577.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321604|gb|EFB51929.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282331317|gb|EFB60831.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595817|gb|EFC00781.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|283790528|gb|EFC29345.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920323|gb|EFD97389.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095164|gb|EFE25429.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466879|gb|EFF09399.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|315195518|gb|EFU25905.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 876

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIVSAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   N VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|22299646|ref|NP_682893.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|22295830|dbj|BAC09655.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 891

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 514/912 (56%), Gaps = 54/912 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+   GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P     T
Sbjct: 14  TGDQIRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRAT 72

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  + L  
Sbjct: 73  TAQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPP 128

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ D+EA+ +W +  GL  ++I R+    NFW+   TGPCGPCSEI++D    
Sbjct: 129 ERLLVSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYDFYPE 188

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      ++  R+IE++NLVFM+  Q ++  R  L   +IDTGMGLERMA VLQ   N
Sbjct: 189 K-GLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPN 247

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+A+ Q  G++Y+  N     + +VI DH R+   LIADG+  +N GRGY
Sbjct: 248 NYETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGY 307

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + ++RLLG    +   L         + YP + + + +I   L+ E+E+F 
Sbjct: 308 VLRRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFL 367

Query: 360 KTLDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           KTLDRG  LL  +LS L K +        L G  AF L+DT+G PL++ Q+I   +G+ G
Sbjct: 368 KTLDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQGI-G 426

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F   + EQR R++A    +     E I  SL ++   TQF GY+ L         
Sbjct: 427 VDVAEFEACMAEQRQRSQAAHETIDVTVQEGID-SLGDQLHPTQFRGYEEL--------- 476

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ V AI+  G     A +G +V+V+ + TPFYAE+GGQ+GD G
Sbjct: 477 --------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRG 522

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   + I DVQK+ E +FVH+  VERG L+    +   ID   RR++  +H+ATHL
Sbjct: 523 YLASSDALVHIHDVQKQKE-LFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHL 581

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++  ++SQ GS +  D LRFD    +P+T  EL+ IED +N  I+++    T 
Sbjct: 582 LQAALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTY 641

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM   +A A GA A+ G KY ++VRV+ +        S  LCGGTHV +T EI L  I+S
Sbjct: 642 IMALSEAKAKGAIAMFGEKYGEQVRVLDIPG-----VSMELCGGTHVHNTAEIGLFKIIS 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEAI G   R +L  +D  ++ L    K     ++ R+ ++  + +  Q 
Sbjct: 697 ESGVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQK 756

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L +            + + + +   ++ VD + LK+  + L  K+ SG ++L
Sbjct: 757 ALEHLKAELALAKTQALLEQAKPVGNSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  K ++L+  ++D++ R  +A  L    A+V  GG GGGRP+ AQ+GG    K  
Sbjct: 817 ATQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLA 875

Query: 887 QAIAGVASFLKK 898
           +A+    S LK+
Sbjct: 876 EALELAHSRLKE 887


>gi|282916887|ref|ZP_06324645.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770692|ref|ZP_06343584.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319374|gb|EFB49726.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460839|gb|EFC07929.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 876

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKVTTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGLVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|297529280|ref|YP_003670555.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|297252532|gb|ADI25978.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 878

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/912 (39%), Positives = 527/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F I DG LP+
Sbjct: 237 ILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+
Sbjct: 297 NEGRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARVIRT 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ ++     G+ 
Sbjct: 357 EEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEAGMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    ++F+GYD L        
Sbjct: 417 -VDHAGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKDESRFVGYDEL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +S V AIV+ G +VEE  +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 466 ---------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQIADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + DVQK   G  +H  IVERG ++        +D   R ++  NH+ATH
Sbjct: 511 GVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKRMRIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I ++LPV  
Sbjct: 571 LLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLPVDI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 631 FYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E ++L+
Sbjct: 686 SESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELKELE 745

Query: 772 LIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
             +     +L     +    ++ DVN +  + ++V   D  +L+++ D L++K+ + +I+
Sbjct: 746 RENESLAARLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   ++  K  ++  VT+DL+ + F+A  L +  A   GGGGG GRP +AQ+GG + +K 
Sbjct: 806 LAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGGG-GRPDLAQAGGKDPSKV 863

Query: 886 DQAIAGVASFLK 897
            +A+  V +++K
Sbjct: 864 GEALGYVETWVK 875


>gi|262048613|ref|ZP_06021496.1| alanyl-tRNA synthetase [Staphylococcus aureus D30]
 gi|259163260|gb|EEW47819.1| alanyl-tRNA synthetase [Staphylococcus aureus D30]
          Length = 876

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 513/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY+D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYSDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|296333167|ref|ZP_06875620.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675327|ref|YP_003866999.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149365|gb|EFG90261.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413571|gb|ADM38690.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 878

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 517/911 (56%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           DQ  L +TV+ EDEEA++ W K  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DQELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E ++G  Y  +N      +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFVPIIKATETISGEIYGTDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMYDLVPVVAEIMADFYPEVKEKSDFIAKVIKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSEMIKKEKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + + +QR RAR     +GS   +    +L++    + F+GY   +        
Sbjct: 417 VDHKGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQTKAD------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V  ++Q G+ ++EA  G+ V+++ D+TPFYAE+GGQ+GD G
Sbjct: 469 -----------------ANVIVLLQDGQFIDEAHEGESVQIILDETPFYAESGGQIGDKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   ++I DVQK   G  VH  +VE G ++  + +   ++   R  +  NH+ATHL
Sbjct: 512 YLRSEQAIVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSSVIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IVS
Sbjct: 632 LKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GGYSLELCGGCHVRNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TGQ A   +  Q   LK  A  LK +   V  RV  +  E ++ Q 
Sbjct: 687 ESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQAADELKTNIKEVPKRVAALQAELKEAQR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +         ++  V  ++  ++  D   L++++D L+ K+ S +I+L
Sbjct: 747 ENDTLLAKLGNVEAGAILSKVKEVDGVRVLAEKVNAKDMNHLRTMVDELKAKLGSAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K ++   VT+DL+++  +A  L + +A+V GGGGG GRP MAQ+GG    K +
Sbjct: 807 GAVQND-KVNISAGVTKDLIEKGLHAGKLVKQAAEVCGGGGG-GRPDMAQAGGKQPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+A V  ++K
Sbjct: 865 EALASVEDWVK 875


>gi|253732273|ref|ZP_04866438.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724062|gb|EES92791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 877

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/909 (37%), Positives = 511/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 7   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 67  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 123 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 179

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 180 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 240 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 300 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 360 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK     + F+GYD             
Sbjct: 419 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSVSTFVGYDT------------ 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 465 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 514 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 574 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 634 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L  Q
Sbjct: 689 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 748

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 749 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 808

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 809 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 866

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 867 LSFIKDYIK 875


>gi|119713374|gb|ABL97437.1| alanine-tRNA ligase [uncultured marine bacterium EB80_69G07]
          Length = 888

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/915 (45%), Positives = 598/915 (65%), Gaps = 50/915 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +++ IR+TFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  YQ  
Sbjct: 4   KSLNEIRSTFLKYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKER I+LAW+L+TK+F LD
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKERGIELAWNLITKDFGLD 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TV+ ED+EAF  WKKI+G S D+IIRI+T+DNFWSM ETGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVFHEDDEAFNFWKKIAGFSDDRIIRISTSDNFWSMGETGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+  ++G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLKGGLPGTKDQDGDRFIEIWNLVFMQYEQVSKDKRIDLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY  D FK LI +   VT +K   NNI + RVI DHLR+SSFL+A+G+LP+NEGRGYV
Sbjct: 244 HDNYQTDHFKKLISSISDVTKVKQADNNISSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  EP+   +  +L  EM   YPEL ++K LI+ETL+ E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSKEPIFYKIFESLKNEMSGNYPELERSKSLIKETLKMEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  +S +  D++L+GDVAFKLYDT+G PLD+ +DIL  + L  +D   F++
Sbjct: 364 LLDRGIKILNDEISKI--DKVLSGDVAFKLYDTYGFPLDLTEDILKNKSLK-VDHQKFDE 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++ +  A+ +  G G  + E IWF +K+K G T+F+GY+                   
Sbjct: 421 LMKKSKELAKKNWKGSGDSSEEAIWFLIKDKTGPTEFLGYES------------------ 462

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                N    +V  +++  +  +   +G++  ++ +QTPFY E+GGQLGD G  +     
Sbjct: 463 -----NQSEGVVLNLIKNNQESKSLATGEEGMIITNQTPFYGESGGQLGDKGTIVSGNSV 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ D QKK   +FVH+  V+ G ++    + + ID + R  L   HSATHLLH +L   
Sbjct: 518 FEVEDTQKKLGDLFVHYGSVKTGEIKINDVVEMKIDVERRNNLKAYHSATHLLHESLRRT 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + PD LRFD +H KPIT+ EL++I+  VN+ +     V TRIM  + AI
Sbjct: 578 LGKHVMQKGSLVAPDRLRFDFSHMKPITNEELETIDKLVNEYVKNGSEVTTRIMTPKAAI 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA A  G KY + VRVVS+  E     S+ LCGGTHV +TG+I     +S+SSI AG+
Sbjct: 638 EKGALAFFGEKYGEEVRVVSMGKEKDAYFSTELCGGTHVKNTGDIGKFKTISQSSIAAGV 697

Query: 721 RRIEAITGQRARSHL-----------MGQDEKLKSLASFL-------KVSQGNVVGRVEE 762
           RR+EA+  ++    +              +E +K L+S +       KV   ++   ++ 
Sbjct: 698 RRVEALRDKQLEDFIKNKEKLSTLSVQKDEETIKDLSSQIIKLGGKPKVDNKDLKEIIKN 757

Query: 763 IWEEYRKLQLIHAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +    ++L+ ++    LQ   ++ ++  KI D+      + ++  K+L+ ++D+ +K++ 
Sbjct: 758 L---SKQLEQLNVNSVLQDKTKNIINDQKIKDIKVRFQKVQDLPPKDLRKLVDSGKKELG 814

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            GI+++   S E K  + + +TE L+D+++AV  A+L ++++GG GGGGR   AQ+GG +
Sbjct: 815 DGIVIVFASS-EDKVGLGVGITEKLVDKYDAVKFAKLGSEIIGGKGGGGRKDFAQAGGQD 873

Query: 882 GNKADQAIAGVASFL 896
            +K D+A   + + +
Sbjct: 874 KDKIDEAFEKLKALI 888


>gi|262051273|ref|ZP_06023497.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282920165|ref|ZP_06327890.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|259160910|gb|EEW45930.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3]
 gi|282594513|gb|EFB99498.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765]
          Length = 876

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAISGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLI 773
              AG+RRIEA+TG+ A  +L    EK  ++ S LKV   + VV ++ ++ +E + L   
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQLQDEEKALLKQ 747

Query: 774 HAKRKLQLNVEDLSCHK--IADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
             +R  ++    +   +  + ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDRVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|328554359|gb|AEB24851.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
 gi|328912763|gb|AEB64359.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 878

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/911 (37%), Positives = 518/911 (56%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 EKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+A+E+++G  Y  +       +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQNVPTNFDTDLFMPIIEAAERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +G + P M  L+P +   M + YPE+ + +  I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+    ++   I++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSDVIKKEKENGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   +E+QR RAR     +GS   +    +L++    + F+GY   +        
Sbjct: 417 VDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSATK-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+GD G
Sbjct: 467 ---------------AEAKVIELLHDGQLISEAHEGDTVQILLDETPFYAESGGQIGDRG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+ATHL
Sbjct: 512 VLRSAQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I  ++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWASIPVAID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IVS
Sbjct: 632 LKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E ++ Q 
Sbjct: 687 ESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKTNVKDVPKRIQSLQAELKEAQR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +          I  V  ++  ++  D   L++++D L+ K+ S +I+L
Sbjct: 747 ENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIIL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K ++   VT+DL+++  +A  + + +A+V GGGGG GRP MAQ+GG    K +
Sbjct: 807 GAVQND-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGGG-GRPDMAQAGGKQPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+     ++K
Sbjct: 865 EALTSAEDWIK 875


>gi|312110118|ref|YP_003988434.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215219|gb|ADP73823.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 877

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 525/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
            VQK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NVQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 EPERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EEF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ    N++ DLF  +I+A+E+++G +Y  +    V  +VI DH+R+ +F I DG LP+
Sbjct: 237 ILQGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +A+ L    P M  L+P +   MG  YPE+ +    I++ +++
Sbjct: 297 NEGRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKVIKT 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    +   ++++G+  F+LYDT+G P+++ ++     G+ 
Sbjct: 357 EEERFHETLHEGLAILASVIEKEKERGSDVISGEDVFRLYDTYGFPVELTEEYAQEEGMK 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    ++F+GYD L        
Sbjct: 417 -VDHEGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKVESRFVGYDEL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V  IV+ G + +E   G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 466 ---------------HAQSKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQIADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +  R  + DVQK   G  +HH IVE+G L+   + +  ID   R  +  NH+ATH
Sbjct: 511 GWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++PV  
Sbjct: 571 LLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIPVDI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                 +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 631 FYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+ +A  LK S   +  R++ +  E R+LQ
Sbjct: 686 SESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIRQLQ 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         ++  +  ++  ++  D   L++++D L++K+ S +I+
Sbjct: 746 RENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  +  E K S++  +T+DL+++ ++A  L +  A   GGGGG GR  MAQ+GG +  K 
Sbjct: 806 LAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVAVRCGGGGG-GRADMAQAGGKDPGKV 863

Query: 886 DQAIAGVASFLK 897
            +A+  V +++K
Sbjct: 864 GEALQYVETWIK 875


>gi|303230862|ref|ZP_07317609.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514622|gb|EFL56617.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 872

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/907 (37%), Positives = 499/907 (55%), Gaps = 55/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQHCKT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIFPIIKATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + A++EQR RAR   +                               +K    D   L  
Sbjct: 416 DAAMKEQRERAREARVK----------------------------EDAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++     +S V  + +  E ++ AV G ++ V+   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIVGSM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ ++
Sbjct: 568 RVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SES I +
Sbjct: 628 AKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--- 775
           G+RRIEAITG+ A          ++ +AS LK     V  R+ ++  E ++         
Sbjct: 683 GVRRIEAITGRAALDAAKHDRLTIERIASELKTKPAQVEERLHQVLAEAKETAKELDQIR 742

Query: 776 KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISK 832
           K        D+   K  I DV F++  +      EL+   D    K+  SG++++     
Sbjct: 743 KEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGAAMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K   A+  
Sbjct: 803 DDKVNFVCKVSKDVVGKGVKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMDALKA 861

Query: 892 VASFLKK 898
               +K+
Sbjct: 862 AGEAVKE 868


>gi|261418428|ref|YP_003252110.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767612|ref|YP_004133113.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374885|gb|ACX77628.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112478|gb|ADU94970.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 878

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/912 (39%), Positives = 526/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F I DG LP+
Sbjct: 237 ILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +    I   +R+
Sbjct: 297 NEGRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARVIRT 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ ++     G+ 
Sbjct: 357 EEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEAGMT 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    ++F+GYD L        
Sbjct: 417 -VDHAGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKDESRFVGYDEL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +S V AIV+ G +VEE  +G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 466 ---------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQIADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +     + DVQK   G  +H  IVE G ++        +D   R ++  NH+ATH
Sbjct: 511 GVFESETGTAVVKDVQKAPNGQHLHAIIVEYGTVKKGSRYTARVDEAKRMRIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I ++LPV  
Sbjct: 571 LLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLPVDI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 631 FYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ ++ E ++L+
Sbjct: 686 SESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELKELE 745

Query: 772 LIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826
             +     +L     +    ++ DVN +  + ++V   D  +L+++ D L++K+ + +I+
Sbjct: 746 RENESLASRLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   ++  K  ++  VT+DL+ + F+A  L +  A   GGGGG GRP +AQ+GG + +K 
Sbjct: 806 LAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGGG-GRPDLAQAGGKDPSKV 863

Query: 886 DQAIAGVASFLK 897
            +A+  V +++K
Sbjct: 864 GEALGYVETWVK 875


>gi|51474024|ref|YP_067781.1| alanyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|59798518|sp|Q68VQ7|SYA_RICTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51460336|gb|AAU04299.1| Alanine translase [Rickettsia typhi str. Wilmington]
          Length = 877

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/890 (46%), Positives = 559/890 (62%), Gaps = 37/890 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI   WDLLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY+T+Y  D+ A   W+KISGL  D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYVTIYHTDDTAASYWEKISGLRDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEE 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+ +R+IEIWN+VFMQ+EQ NK+ R  LPK SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K +G    ++RVI DHLR+SSFLIADGI+P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRAM +A +LG  EPLM  LLP L   MG+ YPEL  A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAEGFISSILEQEEIRFKTT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + 
Sbjct: 365 LERGLKLLTEETKTLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEL 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE+YG+T+F+GY L                   
Sbjct: 424 MLIQKERARTSWLGSGESKTDQLWFDIKEQYGSTEFLGYTLNEAKC-------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   + +       +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ---------KIIALIKNNNLADTIQEVDTQFLLIANQTPFYGESGGQMGDIGMIFSQDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +    ID + R+ L I+HSATH+LH  L  I
Sbjct: 521 VEVIDTLKYLRSIIVHKCILKKGKINIGENANFNIDIKYRKNLRIHHSATHILHAVLHKI 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG  V Q GS +T   LRFD+ HSK IT+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKQVIQKGSLVTSTYLRFDINHSKAITNEEITLIEDKVNEIIRNNHEVNTTVMFTEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I+SESSI AG+
Sbjct: 641 KQGAIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGAFKIISESSIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G+     +  +D  +K + S +K ++  ++ +V  I E  ++L+    K  L 
Sbjct: 696 RRIEAVCGEFVIKLIREKDNLIKLIESSVKTNKNELITKVTNILERNKELEKELEKAHLA 755

Query: 781 ---LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L++E +     +IA +  +   +  +++K L+   + L +K+++ I++ +      K
Sbjct: 756 GLDLSIEQIKKQAEQIAGIKLLYKKVGNINNKILRQAAENLTQKLENLIVVYIAHGV-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            S+ + V++ + D+FNA  +A+  +  LGG GGGG+  +AQSGG +    
Sbjct: 815 LSITVAVSKAITDKFNAGIIAKELSLFLGGSGGGGKASIAQSGGNDIVNL 864


>gi|308174440|ref|YP_003921145.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607304|emb|CBI43675.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 878

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/911 (37%), Positives = 522/911 (57%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 EKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I+A+E+++G  Y  +       +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQDVPTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +G + P M  L+P +   M + YPE+ + +  I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+    +    I++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   +E+QR RAR     +GS   +    +L++    + F+GY  ++        
Sbjct: 417 VDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAVK-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+GD G
Sbjct: 467 ---------------AEAKVIELLHDGQLISEAQEGDTVQILLDKTPFYAESGGQIGDRG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+ATHL
Sbjct: 512 VLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIPVAID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IVS
Sbjct: 632 LKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E ++ Q 
Sbjct: 687 ESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELKEAQR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +          I  V  ++  ++  D   L++++D L+ K+ S +I+L
Sbjct: 747 ENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIIL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K ++   VT+DL+++  +A  + + +A+V GGGGG GRP MAQ+GG    K +
Sbjct: 807 GAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGGG-GRPDMAQAGGKQPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+A    ++K
Sbjct: 865 EALASAEDWIK 875


>gi|291087654|ref|ZP_06347045.2| alanine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074356|gb|EFE11720.1| alanine--tRNA ligase [Clostridium sp. M62/1]
          Length = 868

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/901 (37%), Positives = 514/901 (57%), Gaps = 48/901 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +D+EAF +W K  G+ A++I R    DNFW     GPCGPCSEI++D+GE    G PG
Sbjct: 117 YQDDDEAFDIWNKEMGIPAERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 SS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            +   + +RYIE+WN VF QF+         L   +IDTGMGLER+A ++Q+  + + ID
Sbjct: 176 CTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVIVQDVDSLFTID 235

Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K L+     + G +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGYVLRR++
Sbjct: 236 TNKALLDRVCALAGKEYQKDHETDVSLRIVTDHIKSCTFMISDGIMPSNEGRGYVLRRLL 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + R LG     +  L   +       YPEL + K +I + L  E+++F KT+D+G
Sbjct: 296 RRAARHGRKLGIEGKFLAELSRTVIELSKDGYPELDEKKAMIFKVLTEEEDKFNKTIDQG 355

Query: 366 LVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L+ + S + K   ++L+G+ AFKLYDT+G P+D+ ++IL  R L+ +D   F   ++
Sbjct: 356 LSILNEMESEMAKKGEKVLSGENAFKLYDTYGFPVDLTKEILEERDLS-VDEEGFAACMK 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +Q+  ARA          +   +   +    T+F+GYD L                    
Sbjct: 415 KQKDAARAARKTTNYMGADVTVYQSIDPAVTTEFVGYDRLVH------------------ 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  +  + E+VE    GQ   ++  +TPFYA  GGQ  D G    +    ++
Sbjct: 457 -----ESEITVLTTEDELVEALTDGQNGTIIVKETPFYATMGGQQADIGVISTENGTFEV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  K   G   H   V +G+ +    + LT++ +NR   + NHSATHLLH AL T+LG+
Sbjct: 512 KDTIKLQGGKVGHVGTVTKGMFKVGDQVTLTVNKENRELTARNHSATHLLHKALRTVLGT 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA +LPVVT IM+ E+A  +G
Sbjct: 572 HVEQAGSLVTKDRLRFDFTHFSAMTPDEIAAVEKMVNDEIAASLPVVTDIMSLEEAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVV +     G  S+ LCGGTHV +T  I    IVSE+ I AG+RRI
Sbjct: 632 AMALFGEKYGESVRVVRM-----GDFSTELCGGTHVPNTSTISAFKIVSEAGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+T      +    +++L   A  +K +   +  +++ + +E + L   + K K +L  
Sbjct: 687 EALTSTGLMDYYHEMEQELHEAAKLVKSTPAALHDKLQAMLDELKALHSENEKLKSRLAN 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        +I  V  ++  +  VD   L+++ D L++K+  G++++  + ++ K ++
Sbjct: 747 DSLGDVLNQVKEINGVKLLAVRVDGVDMNGLRNLGDQLKEKLGEGMVVIASV-QDGKVNL 805

Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +   TE    +  +A +L +  A ++GGGGG GRP+MAQ+GG N    + A+      + 
Sbjct: 806 MASATEGAQKKGAHAGNLIKAIASLVGGGGG-GRPNMAQAGGKNPAGVEDALRKAEEVIA 864

Query: 898 K 898
           +
Sbjct: 865 E 865


>gi|154483551|ref|ZP_02025999.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC
           27560]
 gi|149735461|gb|EDM51347.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC
           27560]
          Length = 886

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/906 (38%), Positives = 524/906 (57%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH ++ S SL+P ND +L+  N+GM P K  FTGQE P    V T
Sbjct: 13  LNELRKMFLDFFESKGHLVMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRTRVAT 72

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L+  
Sbjct: 73  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLEAD 128

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ A++I +    DNFW     GPCGPCSEI++D+G   
Sbjct: 129 RLYPSVYLEDDEAFDIWNKEMGIPAERIFKFGKEDNFWEHGA-GPCGPCSEIYYDRGAKY 187

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RYIEIWN VF QFE         L + +IDTGMGLER+ATV+Q+  
Sbjct: 188 GCGKPGCTVGCECDRYIEIWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLATVVQDVD 247

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++   +Y  E    V+ R++ DH+RS++F+I+DGI+P+NEGRGY
Sbjct: 248 SIFDVDTIKALRDKVCELANKEYKKEYKWDVSIRIVTDHIRSATFMISDGIMPSNEGRGY 307

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     +  L   +       YPEL + K +I + L  E+ +F 
Sbjct: 308 VLRRLIRRAARHGKLLGIDGRFLSTLSETVIESSKDGYPELEEKKSMIFKVLSEEENKFN 367

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L  +   + K+    L+G+ AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 368 KTIDTGLNILADMEEEMKKNNQTQLSGENAFKLYDTYGFPLDLTEEILEEKGF-GVDEDG 426

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+E QR +AR+          +   +   +K   T+F+GYD L              
Sbjct: 427 FKEAMEVQRKKARSARKKTNYMGADATVYEQLDKALTTKFVGYDKLISD----------- 475

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       ++V A+  + E+V+  V G K  +V ++TPFY   GGQ+GD G  + +
Sbjct: 476 ------------TVVTALTTEKEVVQALVDGDKGTIVTEETPFYGTMGGQVGDKGIIVTN 523

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G   ++ +      G   H   V +G+++      + +D   R   S NHSATHLL  AL
Sbjct: 524 GGEFKVEETIHLLGGKIGHVGTVVKGMIQVGDKATMKVDSAFRADTSKNHSATHLLQKAL 583

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG HV Q GS +  D LRFD TH + +T  E++ +E+ VN+ IA  L V+T+ M+ +
Sbjct: 584 KTVLGEHVEQAGSYVDADRLRFDFTHFQAMTKEEIEKVENLVNEQIATGLDVITKEMSLD 643

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVVS+     G +S  LCGGTHVS+T  I    I+SES + 
Sbjct: 644 EAKETGAMALFGEKYGEKVRVVSM-----GDYSIELCGGTHVSNTNVISSFKIISESGVA 698

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T      H    +  L   A   K     +V +++ +++E ++L   + K 
Sbjct: 699 AGVRRIEALTSTGLMKHYKESENVLNQAAKLAKSEPVALVEKIQALYDEIKELSKENEKL 758

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  E +        ++  V  ++  +  V   EL+++ D L++K+  G++++V   +
Sbjct: 759 KAKLANEAVGDVLSQVVEVKGVKLLATHVEGVGMNELRNLGDQLKEKMGGGVVVIVST-Q 817

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + KA+V+++  ED + +  +A ++ +  AK++GGGGG GRP+MAQ+GG N   A  A+  
Sbjct: 818 DGKANVIVMADEDAISKGAHAGNMIKEIAKLVGGGGG-GRPNMAQAGGKNPAGAKDAVEA 876

Query: 892 VASFLK 897
             + L+
Sbjct: 877 AKTILE 882


>gi|229824851|ref|ZP_04450920.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC
           49176]
 gi|229790854|gb|EEP26968.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC
           49176]
          Length = 888

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/912 (38%), Positives = 514/912 (56%), Gaps = 42/912 (4%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +  V+ +R  FLEFF+K GH  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKSYGVNELRRMFLEFFEKKGHLKMNSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V T QKC+R G    D+DNVG+T RH TFFEMLGNFSFG YFKE AI  AW+ LT+  
Sbjct: 61  KRVCTCQKCIRTG----DIDNVGKTARHGTFFEMLGNFSFGDYFKEEAIPWAWEFLTETV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            +   RLY +VY +D EAF++W K   +SA++I +    DNFW     GPCGPC+EI+FD
Sbjct: 117 GIPADRLYPSVYVDDNEAFEIWNKKMNISAERIFKFGKEDNFWEHGS-GPCGPCTEIYFD 175

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G PG +   + +RY+E+WN+VF QF+   K     L + +IDTGMGLER+A  
Sbjct: 176 RGEKYGCGKPGCTVGCDCDRYMEVWNVVFSQFDNDGKGNYSDLEQKNIDTGMGLERLAVA 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D    L     ++   KY+ N  N ++ RVI DH+RS++F+I+DGI+P+N
Sbjct: 236 VQDVDSIFDVDTLLALRNKVCEIADKKYKDNEKNDISIRVITDHIRSATFMISDGIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + +LLG     ++ L  A+       YPEL + +  I   +  E
Sbjct: 296 EGRGYVLRRIIRRADRHGKLLGIDGAFLVGLAKAVIAGSKDGYPELAEKQDFILNVIEQE 355

Query: 355 DERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+++GL +L+G+         + ++G+ AFKLYDT+G P+D+ ++IL  +G+  
Sbjct: 356 EEKFEKTINQGLEILEGIQKDMEAKGVKTMSGEDAFKLYDTYGFPIDLTKEILEEKGM-D 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID  +F QA++ Q+  AR           +   +   +    ++FIGYD       +   
Sbjct: 415 IDEEAFKQAMKVQKDTARNARKTTSYMGADATIYEQIDPAINSEFIGYDKTEAEGKIVAL 474

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
             V  ++                 ++  I E    G    V+ D TPFYA  GGQLGD G
Sbjct: 475 VSVGSEEDG---------------EESAISEALTDGMTGAVITDVTPFYATKGGQLGDIG 519

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D    A     H   V +G+ +    + L +D +NR     NHSATHL
Sbjct: 520 VITVGDAVFEVKDTIPVAGSKIAHIGKVIKGMFKIGDKVTLKVDAENRMATCRNHSATHL 579

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q+GS       RFD +H K +T  E+K++E  VN+ IA+++PV T+
Sbjct: 580 LQKALREVLGTHVEQSGSYQDAGRTRFDFSHFKAMTPEEIKAVEKLVNEKIAESIPVDTK 639

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  SGA AL G KY D VRVV +     G  S   CGGTHV +TG I    I+S
Sbjct: 640 VMSIEEAKKSGAMALFGEKYGDEVRVVGM-----GDFSKEFCGGTHVKNTGMIGQFKIIS 694

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEAITG     +    +  +   A  LK S   +V + + + EE + LQ 
Sbjct: 695 ESGVAAGIRRIEAITGNNVIKYYENLENTIAEAAKMLKASPDKLVEKAKHLMEELKSLQS 754

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +   E L        +I  V  ++  I + D  EL+++ D L+ K+  G+I L
Sbjct: 755 ENESLKNKAAKEALGDVMDKVVEIGGVKVLAVDIPDTDGNELRNLGDELKNKLGEGLIFL 814

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              +K+ K +++ + T+  +    +A +L +  A ++GGGGG GRP+MAQ+GG    K  
Sbjct: 815 AS-AKDGKVNLVAMATDGAVKAGVHAGNLIKTVAPIVGGGGG-GRPNMAQAGGKFSEKKA 872

Query: 887 QAIAGVASFLKK 898
            A+  VA  +KK
Sbjct: 873 DAVKAVADEVKK 884


>gi|220903571|ref|YP_002478883.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867870|gb|ACL48205.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 892

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/916 (40%), Positives = 518/916 (56%), Gaps = 42/916 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF ++ HE++ S  +IP NDP+L+F NSGMV FK +F G+EK  Y  
Sbjct: 1   MLTAKEIRRRYLDFFHRHQHEIVASGPIIPPNDPSLLFANSGMVQFKKLFLGEEKRSYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R  GKHNDL+NVGRT RHHTFFEMLGNF+FG YFK  AI  AWD +TKE +L
Sbjct: 61  ATTCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFAFGDYFKREAITWAWDFVTKELEL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+ ED+EA  LW +I+GL A++I+R+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKEKLWVTVFREDDEAAVLWAEIAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYVDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G      + + +R++EIWNLVF QF+Q     R +L + +IDTGMGLERMA V Q
Sbjct: 181 ADMSCGPDCGIGNCDCDRFLEIWNLVFTQFDQSADGTRTLLARPNIDTGMGLERMAAVAQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE------GNNIVNHRVIVDHLRSSSFLIADGILP 292
            K +N+D DLF+ +IQ +  + G+ Y        +     RVI DH R+++FL+A G+LP
Sbjct: 241 GKRSNFDCDLFQDIIQYAAGLAGVTYSFSAPDTNDVDTALRVIADHSRAAAFLVAGGVLP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA+ +A L+G  EP M  +   +   MG AYPEL+++   I+  + 
Sbjct: 301 SNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGDAYPELVESADFIDRAVF 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL +GL LL+  L+ L    I  + GD  FKLYDT+G PLDI+ D+   RG 
Sbjct: 361 EEEQRFSLTLKKGLDLLEEELAALKARGITLIPGDFCFKLYDTYGFPLDIVTDVAEKRGF 420

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              D   F + ++EQR RAR H    G        +  + SL +    ++F+GY+ L   
Sbjct: 421 HA-DAEGFEKYMQEQRKRARDHQKKGGLLGQGEDGQSPFKSLADGGAESRFVGYEGL--- 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 S +   +   G+ V+    G+    V + TPFY E GG
Sbjct: 477 -------------------TAQSPVTILLDAAGQPVDVLGEGESGYAVTEATPFYGEGGG 517

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q GDTG         ++    K A  + VH   V RG +     + L +D   R+  + N
Sbjct: 518 QAGDTGLMSATSGEARVLTTHKPAPQLLVHEIEVVRGEILQGKEVRLAVDPDERKATARN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ THLLH AL  +LG HV Q GS +    LRFD +H   +T  EL ++E  VN  I  +
Sbjct: 578 HTCTHLLHAALRRVLGPHVKQAGSLVDGRRLRFDFSHIAALTPEELAAVERQVNAAILAD 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEI 705
           L V  R M   DA+A+GA AL   KY   VRV++V   E     S  LCGGTH++ TGE 
Sbjct: 638 LEVSAREMPMADAVAAGAIALFNEKYGSTVRVLTVAGAEMCDPESVELCGGTHLARTGEA 697

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
              +IVSES + AG+RRIEA+TG  A  H + Q  +L SLA+ LK   G +  RV+ +  
Sbjct: 698 GAFFIVSESGVAAGMRRIEAVTGWNAYGHAVEQRAELGSLAALLKSKPGQLAERVQTLHG 757

Query: 766 EYRKLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           E +KL+    K                ++  V  ++  +  V  K L+ VMD ++ ++  
Sbjct: 758 EVKKLRKASEKAAAAPASGAELVARAVEVNGVRLLAARLDNVPVKALREVMDDVRSRLSE 817

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             +  +   +E K  +L+ V++DL  RF A  L +  A    GG GGGRP MAQ+GG   
Sbjct: 818 NAVACLATVEEGKVGMLVYVSKDLHGRFTAPALIKTVAAPC-GGSGGGRPDMAQAGGNQP 876

Query: 883 NKADQAIAGVASFLKK 898
               +A A +   +++
Sbjct: 877 EGLAEAFAALKKCIEQ 892


>gi|295399321|ref|ZP_06809303.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978787|gb|EFG54383.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 877

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 524/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
            VQK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NVQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  RL +T++ ED+EAF++W K  GL  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 EPERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E +RY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EEF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ    N++ DLF  +I+A+E+++G +Y  +    V  +VI DH+R+ +F I DG LP+
Sbjct: 237 ILQGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +A+ L    P M  L+P +   MG  YPE+ +    I++ +++
Sbjct: 297 NEGRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKVIKT 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL  GL +L  V+    +   ++++G+  F+LYDT+G P+++ ++     G+ 
Sbjct: 357 EEERFHETLHEGLAILASVIEKEKERGSDVISGEDVFRLYDTYGFPVELTEEYAQEEGMK 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    + F+GYD L        
Sbjct: 417 -VDHEGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKVESHFVGYDEL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V  IV+ G + +E   G++ +++ D TPFYAE+GGQ+ D 
Sbjct: 466 ---------------HAQSKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQIADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +  R  + DVQK   G  +HH IVE+G L+   + +  ID   R  +  NH+ATH
Sbjct: 511 GWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD +H   +   EL+ IE  VN+ I +++PV  
Sbjct: 571 LLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIPVDI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                 +A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IV
Sbjct: 631 FYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   L+ +A  LK S   +  R++ +  E R+LQ
Sbjct: 686 SESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIRQLQ 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +         ++  +  ++  ++  D   L++++D L++K+ S +I+
Sbjct: 746 RENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSAVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  +  E K S++  +T+DL+++ ++A  L +  A   GGGGG GR  MAQ+GG +  K 
Sbjct: 806 LAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVAVRCGGGGG-GRADMAQAGGKDPGKV 863

Query: 886 DQAIAGVASFLK 897
            +A+  V +++K
Sbjct: 864 GEALQYVETWIK 875


>gi|258446862|ref|ZP_05695016.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257854437|gb|EEV77386.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300]
          Length = 876

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/909 (37%), Positives = 513/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++      + S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----ALFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S +KV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|15924608|ref|NP_372142.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927198|ref|NP_374731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|148268099|ref|YP_001247042.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394167|ref|YP_001316842.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979936|ref|YP_001442195.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316601|ref|ZP_04839814.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006403|ref|ZP_05145004.2| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793693|ref|ZP_05642672.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258411008|ref|ZP_05681288.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258420190|ref|ZP_05683145.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258438192|ref|ZP_05689476.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443655|ref|ZP_05691994.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258448776|ref|ZP_05696888.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258453595|ref|ZP_05701573.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|269203244|ref|YP_003282513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893121|ref|ZP_06301355.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282928252|ref|ZP_06335857.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|295406740|ref|ZP_06816545.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|296276721|ref|ZP_06859228.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245678|ref|ZP_06929543.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|54039649|sp|P67011|SYA_STAAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54042024|sp|P67010|SYA_STAAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830214|sp|A7X328|SYA_STAA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830215|sp|A6U287|SYA_STAA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830216|sp|A5ITE3|SYA_STAA9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13701416|dbj|BAB42710.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|14247389|dbj|BAB57780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741168|gb|ABQ49466.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946619|gb|ABR52555.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|156722071|dbj|BAF78488.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787665|gb|EEV26005.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257840158|gb|EEV64622.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257843901|gb|EEV68295.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257848236|gb|EEV72227.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851061|gb|EEV75004.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257858054|gb|EEV80943.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257864326|gb|EEV87076.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937]
 gi|262075534|gb|ACY11507.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590059|gb|EFB95141.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282764439|gb|EFC04565.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|285817300|gb|ADC37787.1| Alanyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|294968487|gb|EFG44511.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|297177329|gb|EFH36581.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|312830005|emb|CBX34847.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315129899|gb|EFT85889.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727520|gb|EGG63976.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 876

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/909 (37%), Positives = 512/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H  +V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S +KV   + VV ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|154686881|ref|YP_001422042.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|205829982|sp|A7Z735|SYA_BACA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154352732|gb|ABS74811.1| AlaS [Bacillus amyloliquefaciens FZB42]
          Length = 878

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/911 (37%), Positives = 524/911 (57%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   L +TV+ EDEEA+ LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E +RY+E+WNLVF +F          LPK +IDTGMGLERM +V
Sbjct: 178 EKYGNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+ + N+D DLF  +I+A+E+++G  Y  +       +VI DH+R+ +F ++DG LP+N
Sbjct: 238 IQDVSTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ LG + P M  L+P +   M + YPE+ + +  I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKTLGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+    +    I++G   FKLYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   +E+QR RAR     +GS   +    +L++    + F+GY  ++        
Sbjct: 417 VDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAVK-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V  ++  G+++ EA  G  V+++ D+TPFYAE+GGQ+GD G
Sbjct: 467 ---------------AEAKVIELLHDGQLISEAHEGDTVQILLDKTPFYAESGGQIGDRG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + I DV+K   G  VH   V+ G ++   S+   ++ Q R  +  NH+ATHL
Sbjct: 512 VLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++PV   
Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIPVAID 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +    +A   GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IVS
Sbjct: 632 LKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   L+  A  LK +  +V  R++ +  E ++ Q 
Sbjct: 687 ESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELKEAQR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +          I  V  ++  ++  D   L++++D L+ K+ S +I+L
Sbjct: 747 ENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIIL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K ++   VT+DL+++  +A  + + +A+V GGGGG GRP MAQ+GG +  K +
Sbjct: 807 GAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVCGGGGG-GRPDMAQAGGKHPEKLE 864

Query: 887 QAIAGVASFLK 897
           +A+A    ++K
Sbjct: 865 EALASAVDWIK 875


>gi|225570650|ref|ZP_03779673.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
 gi|225160477|gb|EEG73096.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM
           15053]
          Length = 879

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/907 (37%), Positives = 507/907 (55%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLE+F+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEYFESKGHLIMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ +I+  W+ LT    L+  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLEPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EA+++W K  G++ ++I R    DNFW     GPCGPCSE+++D+G   
Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIAPERIFRFGKEDNFWEHGS-GPCGPCSEVYYDRGPKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A V+Q   
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACVVQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      +T  +Y  +    V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SMFDIDTIKALRDHVCHITKTEYGQDDETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I + +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLGVEGEFLVELARTVIEGSRDGYPELEEKKDFIFKVIAKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  + + + K+  + L+GD AFKLYDT+G PLD+ ++IL  +GL+ +D   
Sbjct: 361 KTIDQGLSILAEMEAEMEKNGEKTLSGDHAFKLYDTYGFPLDLTKEILEEKGLS-VDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++E QR  AR           +   +        ++F+GYD L              
Sbjct: 420 FRASMEVQRRTAREAREVTNYMGADATVYESIAPEVTSEFVGYDNL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + EI +    G +  V  ++TP YA +GGQ  D G     
Sbjct: 466 ---------SFESSVTVLTTETEITDALSDGDRGTVFVEKTPLYATSGGQEADKGYIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ DV K   G   H   V +G+++T  ++ L +D +NR   + NHSATHLLH AL
Sbjct: 517 DGEFRVEDVVKLLGGKIGHVGYVTKGMIKTGDTVTLEVDEENRALSARNHSATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +  + LRFD TH   +T  ELK +E+ VN  I   LPV    +  E
Sbjct: 577 RTVLGTHVEQAGSSVNAERLRFDFTHFSALTKEELKKVEEIVNAQIMAALPVKVENLPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY D VRVVS+     G  S   CGGTHV +TG I    I+SE+ + 
Sbjct: 637 EARKTGAAALFGEKYGDIVRVVSM-----GDFSVEFCGGTHVENTGVITAFKIISETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +++L   A  +K S   +  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSKGLLDYYDELEKRLAEAAKLVKASPDKLAEKITHLLAENKTLHSEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + +        ++  V  ++  +  VD   L+ + D L+ K+  G+I++   + 
Sbjct: 752 KSKLAQDAMGDVMDQVTEVKGVKLLATEVEGVDMNGLRDLGDQLKDKLGEGVIVIASAA- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K +++   T+  +++  +A +L +  A ++GGGGG GRP+MAQ+GG N +    AIA 
Sbjct: 811 GGKVNLMATATKGAIEKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKNPDGISSAIAK 869

Query: 892 VASFLKK 898
               L++
Sbjct: 870 AGEVLEE 876


>gi|254829737|ref|ZP_05234392.1| alanyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 879

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/912 (38%), Positives = 511/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTYFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR+RARA    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDRVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKR 746

Query: 773 IHAKR--KLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     KL             +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELR 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|158521281|ref|YP_001529151.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|205830076|sp|A8ZY67|SYA_DESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158510107|gb|ABW67074.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 876

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/909 (41%), Positives = 533/909 (58%), Gaps = 46/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              +  R TFL++F+  GH ++ SSSL+P  DPTL+F N+GMV FK +F G+EK  Y   
Sbjct: 1   MTGNEARKTFLDYFENQGHRVVRSSSLVPQADPTLLFVNAGMVQFKRVFMGEEKRDYTTA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAWDLL   + L 
Sbjct: 61  TTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKERAIELAWDLLLNGYKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L ++V+ ED+EAF +WK   GL+  +I R+   DNFWSM +TGPCGPCSEI+ D+GE
Sbjct: 121 EDKLSVSVFHEDDEAFSIWKDRIGLAESRIARLGEKDNFWSMGDTGPCGPCSEIYMDRGE 180

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +R++EIWN+VFMQ+ +Q   E   LP  SIDTGMGLER+  V+Q+
Sbjct: 181 KYGCGRPDCAPGCDCDRFMEIWNMVFMQYNRQASGELTPLPHPSIDTGMGLERICAVIQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297
           +  NY+ DLF  +I+  E  +G  Y     ++   +VI DH R+++FLI DG+LP+NEG+
Sbjct: 241 RDTNYETDLFIPIIRGIEAASGKTYGQAPDMDVCMKVIADHSRAAAFLIGDGVLPSNEGK 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y R LG T P +      +   M   YPEL +    I   L +E+ R
Sbjct: 301 GYVLRRILRRAIRYGRQLGLTRPFLSRTAGTVFEVMAEPYPELKENASFITNVLENEEVR 360

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL LL   L       + ++ G V FKLYDT+G P+DI++D++  + + G+D+
Sbjct: 361 FSETLDNGLRLLSETLDGMAAKGESVIPGGVIFKLYDTYGFPVDIVRDVVREK-MIGLDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A+ EQ++++R+    +      + + +L  K   T F+GY  L            
Sbjct: 420 EGFDAAMAEQKAKSRS---VVDFSKQPEAYRNLSAKGMKTGFVGYAGLA----------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+V  G  +E A +GQ++E+V D TPFY  +GGQ+GD G   
Sbjct: 466 ------------AQATVLALVNGGSELETATAGQEIEIVTDTTPFYGASGGQMGDVGVIT 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG+ + +TD  K   G+ +H   V  G ++   ++ L +D   RR  + NH+ATHLLH 
Sbjct: 514 ADGLEITVTDTIKDPTGLVIHKGQVASGTVKKGQTISLAVDEDRRRATAANHTATHLLHA 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G HV Q GS ++PD +RFD TH   +  A L  IE  VND I +N  V    M+
Sbjct: 574 ALGGIVGDHVKQAGSMVSPDRMRFDFTHFSMLDRATLDRIEVFVNDRIRENRAVTISEMS 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY D VRVV+V+       S  LCGGTH   TG+I L  I+SE+S
Sbjct: 634 MDQAMEQGATALFEEKYGDTVRVVAVDG-----VSKELCGGTHAQRTGDIGLFKILSEAS 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A + +  Q   L   A  LK S   +  R++++  E R +    A
Sbjct: 689 VASGVRRIEAVTGAGAVAFVQEQMGILAEAAGMLKESPAALAARIQKLLAESRTMAKEIA 748

Query: 776 KRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
             K  L    +          +  V  ++  ++  +   L+ + D L+ K+ SG+++L G
Sbjct: 749 GLKTSLATASMEGPKSDDAKTLNGVKVIARTVTADNPAALRDLADRLKDKLGSGVVVL-G 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + KA +++ V+ DL  RF A D+ R +A V+GG GG GRP MAQ+GGP     + AI
Sbjct: 808 AAADGKAFLIVSVSRDLTGRFKAGDIVREAAAVVGGKGG-GRPDMAQAGGPQPEHLEAAI 866

Query: 890 AGVASFLKK 898
                 + K
Sbjct: 867 QKACDMIGK 875


>gi|254828262|ref|ZP_05232949.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600650|gb|EEW13975.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 879

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR+RARA    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNTAELG 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|311069223|ref|YP_003974146.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869740|gb|ADP33215.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 878

 Score =  885 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/912 (37%), Positives = 525/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMFLNFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  L +TV+ ED+EA++LW +  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DEELLSVTVHPEDDEAYELWAQKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P  SE     E +RY+E+WNLVF +F          LPK +IDTGMGLERM +
Sbjct: 178 EAY-GNDPADSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293
           V+Q    N+D DLF  +I+A+E ++   Y  +++     +VI DH+R+ +F ++DG LP+
Sbjct: 237 VIQNVPTNFDTDLFMPIIKATETISSEAYGQDDVKNTAFKVIADHIRTVAFAVSDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YPE+ + +  I + +++
Sbjct: 297 NEGRGYVLRRLLRRAVRYAKTININRPFMYDLVPVVAEIMVDFYPEVKEKEEFIAKVIKT 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL+ GL +L  ++         +++G   FKLYDT+G P+++ ++      + 
Sbjct: 357 EEERFHETLNEGLAILSEMIKKEKDKGSSLISGTDVFKLYDTYGFPVELTEEYAEDEQMK 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E+QR+RAR     +GS   +    +L++    + F+GY   +       
Sbjct: 417 -VDHKGFEEEMEKQRARARNARQDVGSMQVQG--GALRDVTVESTFVGYTNTKSD----- 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V  ++Q GE++EEA  G+ ++++ ++TPFYAE+GGQ+GD 
Sbjct: 469 ------------------SSVVELLQDGELIEEAHEGETIQILLNETPFYAESGGQIGDK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        ++ITDVQK   G  VH  +VE G L+  M +   ++   R  +  NH+ATH
Sbjct: 511 GYLRSAQAVVRITDVQKAPNGQNVHEGLVESGTLQKGMHVTAEVEDHMRSGVIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+HV+Q GS +T + LRFD +H   +T  EL+ IE  VN+ I +++PV  
Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEVIVNEKIWESIPVSI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L  IV
Sbjct: 631 DLKPINEAKEMGAMALFGEKYGDIVRVVQV-----GGYSLELCGGCHVKNTAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TGQ A   +  Q   LK +A  LK +  +V  RV  +  + ++ Q
Sbjct: 686 SESGIGAGTRRIEAVTGQGAYLEMNSQIGLLKQVAGELKTNVKDVPKRVAALQADLKEAQ 745

Query: 772 LIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L   +          I+ V  ++  ++  D   L++++D L+ K+ S +++
Sbjct: 746 RENESLLAKLGNAEAGAILSNVKDISGVKVLAEKVNAKDMNHLRTMVDELKAKLGSAVVV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  +  + K ++   VT+DL+D+  +A  L + +A++ GGGGG GRP MAQ+GG    K 
Sbjct: 806 LGAVQND-KVNISAGVTKDLIDKGLHAGKLVKQAAEMCGGGGG-GRPDMAQAGGKQPEKL 863

Query: 886 DQAIAGVASFLK 897
             A+  V  ++K
Sbjct: 864 QDALTSVEEWVK 875


>gi|34222740|sp|Q8DH56|SYA_THEEB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 882

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 514/912 (56%), Gaps = 54/912 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+   GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P     T
Sbjct: 5   TGDQIRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  + L  
Sbjct: 64  TAQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ D+EA+ +W +  GL  ++I R+    NFW+   TGPCGPCSEI++D    
Sbjct: 120 ERLLVSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYDFYPE 179

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      ++  R+IE++NLVFM+  Q ++  R  L   +IDTGMGLERMA VLQ   N
Sbjct: 180 K-GLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPN 238

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+A+ Q  G++Y+  N     + +VI DH R+   LIADG+  +N GRGY
Sbjct: 239 NYETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + ++RLLG    +   L         + YP + + + +I   L+ E+E+F 
Sbjct: 299 VLRRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           KTLDRG  LL  +LS L K +        L G  AF L+DT+G PL++ Q+I   +G+ G
Sbjct: 359 KTLDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQGI-G 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F   + EQR R++A    +     E I  SL ++   TQF GY+ L         
Sbjct: 418 VDVAEFEACMAEQRQRSQAAHETIDVTVQEGID-SLGDQLHPTQFRGYEEL--------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          +++ V AI+  G     A +G +V+V+ + TPFYAE+GGQ+GD G
Sbjct: 468 --------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRG 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                   + I DVQK+ E +FVH+  VERG L+    +   ID   RR++  +H+ATHL
Sbjct: 514 YLASSDALVHIHDVQKQKE-LFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHL 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++  ++SQ GS +  D LRFD    +P+T  EL+ IED +N  I+++    T 
Sbjct: 573 LQAALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTY 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM   +A A GA A+ G KY ++VRV+ +        S  LCGGTHV +T EI L  I+S
Sbjct: 633 IMALSEAKAKGAIAMFGEKYGEQVRVLDIPG-----VSMELCGGTHVHNTAEIGLFKIIS 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEAI G   R +L  +D  ++ L    K     ++ R+ ++  + +  Q 
Sbjct: 688 ESGVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQK 747

Query: 773 IHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +L +            + + + +   ++ VD + LK+  + L  K+ SG ++L
Sbjct: 748 ALEHLKAELALAKTQALLEQAKPVGNSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVL 807

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  K ++L+  ++D++ R  +A  L    A+V  GG GGGRP+ AQ+GG    K  
Sbjct: 808 ATQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLA 866

Query: 887 QAIAGVASFLKK 898
           +A+    S LK+
Sbjct: 867 EALELAHSRLKE 878


>gi|317128237|ref|YP_004094519.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315473185|gb|ADU29788.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 878

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 58/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+FF++ GH++ PS+SL+P  DPTL++ NSG+   K  F G+  P    +T
Sbjct: 5   SSAEVRQMYLDFFKEKGHDVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPKNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAILWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +T+Y +D+EAF+LW K  GL   +IIR+   +NFW + E GPCGP +EIF+D+G
Sbjct: 121 DPEKLSVTIYPDDDEAFELWNKEIGLPESRIIRL--EENFWDIGE-GPCGPNTEIFYDRG 177

Query: 181 ECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDHNDPELYPGGENERYLEIWNLVFSQFNHNADGSYMPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I  +E ++G  Y  N  +    +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAKTNFDTDLFLPIIHETENISGSNYGKNAVDDTAFKVIADHIRTVTFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +    P M  L+P + + M   YPE+ + +  I++ +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKQIHIERPFMYELVPVVGSVMKEFYPEVTEKEAFIQKVIKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+        E+++G   F+LYDT+G P+D+ ++ +   G + 
Sbjct: 358 EERFHETLNEGLAILTKVIEKAKGENKEVIDGVDVFRLYDTYGFPVDLTEEYVLEAGFS- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F   +++QR RARA     GS  T ++I  ++KE+   ++F+GYDLL        
Sbjct: 417 VDRDGFESEMKKQRERARAARQDAGSMQTQDEILGNIKEE---SEFVGYDLLE------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           + ++V  IV+    V EA  G+KV+V+ D+TPFYAE+GGQ+ D 
Sbjct: 467 ----------------IPAVVSVIVKDKAFVNEAKQGEKVQVITDRTPFYAESGGQIADK 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    + + L + +V+K   G  +H   V +G L   M+    +D QNR+ +  NH+ATH
Sbjct: 511 GSFENENVTLAVLEVKKAPNGQNLHTVEVIKGTLTKNMTFAAKVDAQNRKGVIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  D LRFD +H   I+  EL+ IE  VN+ +   + V T
Sbjct: 571 LLHQALKDVLGGHVNQAGSLVAQDRLRFDFSHFGQISEDELEKIESIVNEKVWDGIEVQT 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              +  +A   GA AL G KY D VRVV V     G +S  LCGG HVS++ EI L  IV
Sbjct: 631 MYKSLTEAKEMGAMALFGEKYGDTVRVVRV-----GDYSLELCGGCHVSNSAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  I AG+RRIEA+T + A   + GQ + LK  A  LK    +V  R+E++ +++++L+
Sbjct: 686 SEGGIGAGVRRIEAVTAKNAYQFMNGQLDVLKESAHLLKAKLNDVPFRIEQLQQQFKELE 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L+  +         ++  ++ +   ++  D   L+ + D+L++KI+SGI++
Sbjct: 746 RENESFAAKLSQVEAGNVMDELKEVDGISILVKKVNVPDMNRLRQMADSLKEKIESGILV 805

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  ++ + K +++  V++DL+   ++A ++ +  A   GGGGG GRP MAQ+GG + +K 
Sbjct: 806 LAAVNND-KVNIITSVSKDLVKEGYHAGNIVKEVATRCGGGGG-GRPDMAQAGGKDPSKL 863

Query: 886 DQAIAGVASFLKK 898
           D+A+  V   LK+
Sbjct: 864 DEALKIVPDLLKR 876


>gi|229543743|ref|ZP_04432803.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328163|gb|EEN93838.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 881

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/916 (40%), Positives = 528/916 (57%), Gaps = 62/916 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR+ FL+FF++ GH++ PS+SLIP NDP+L++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEIRSMFLDFFKEKGHKVEPSASLIPVNDPSLLWINSGVATLKKYFDGTVIPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI  AW+LLT  K F +
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAIAWAWELLTSDKWFGM 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+TVY +D ++   WKKI G+S D II +    NFW + E GP GP +EIFFD+G
Sbjct: 121 PKEKLYVTVYPDDLDSIACWKKI-GVSPDHIIPL--EGNFWEIGE-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF         E   LPK +IDTGMGLER
Sbjct: 177 EKYDPERLGIRLLQEDMENDRYIEIWNIVLSQFNAIPGVPRSEYPELPKKNIDTGMGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289
           MA VLQ    NYD DLF  +IQ  E+++G KY   N       +VI DH+R+ +F +ADG
Sbjct: 237 MACVLQGVDTNYDSDLFMPIIQEVEKISGKKYRAGNKEADTAFKVIADHIRTVAFAVADG 296

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ YA  L      M  L+P +   M S YPE+ +    +++
Sbjct: 297 ALPSNEGRGYVLRRLLRRAVRYAIQLDIHGAFMYKLVPTVGRIMNSYYPEVEKNADFVQK 356

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +RSE+ERF +TL+ GL +L+  +    K+  E L G+  F LYDT+G P+++ ++    
Sbjct: 357 VVRSEEERFQETLNEGLSILEERIRAAKKNGLEQLPGEDIFMLYDTYGFPVELTEEYAHD 416

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +GL   D   F + +E QR RAR       S + +     L      ++FIGYD L G  
Sbjct: 417 QGLRA-DHEGFEKEMERQRERARNARQQAESMSVQG--GVLGNITVKSEFIGYDHLEG-- 471

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                ++ V  +++ G+I E A SG+++  + DQTPFYAE+GGQ
Sbjct: 472 ---------------------TAHVAVLLKDGDITESAASGEEIRFILDQTPFYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G    +G+++++T+VQK   G  +H  +V  G ++T   +   +D   RR    NH
Sbjct: 511 IADHGTLTAEGLKVEVTNVQKAPNGQNLHQGVVVSGTIKTGQEVFAQVDGAKRRDTEKNH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV+Q GS + P  LRFD +H   +T  EL+ IE  VN+ I  +L
Sbjct: 571 SATHLLHQALKDVLGVHVNQAGSLVEPGRLRFDFSHFGQVTEEELEKIETIVNEKIWASL 630

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T +   ++A A GA AL G KY + VRVV +     G +S  LCGG HVS+T +I L
Sbjct: 631 PVTTDLKKLDEAKAMGAMALFGEKYGEIVRVVQM-----GDYSLELCGGCHVSNTAQIGL 685

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I AG RRIEA+TG+ A   +  Q   LK  ++ LK     +  R++ + +E 
Sbjct: 686 FKIVSESGIGAGTRRIEAVTGKYAYGLMQEQLHLLKEASAKLKAKPTELPDRIDALQQEL 745

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++ Q  +A    +L   +          +  +N ++  +   D  +L+++ D L++K+ S
Sbjct: 746 KEAQRENASLAAKLANIEAGSLVDRVKVVDGINVLAAKVEAGDMNQLRNMADDLKQKLGS 805

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           GII+L   + E KAS +  VT+DL+++ ++A  L +  A   GGGGG GRP MAQ+GG  
Sbjct: 806 GIIVLAA-ATEGKASFIAGVTKDLVEKGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKQ 863

Query: 882 GNKADQAIAGVASFLK 897
             + D A+  V  ++K
Sbjct: 864 PEQIDAALQIVEEWVK 879


>gi|222529322|ref|YP_002573204.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456169|gb|ACM60431.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 883

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/909 (38%), Positives = 524/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VTG  Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  +LNG++AFK+YDT+G PLD+ ++I   +G+  ID 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLK----------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E    A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 465 ------------QEAKILKIFLDNEEPAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLAAMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  +L  IE+ VN+II Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEEMVNNIIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L++  
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEI 747

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +L           +   + +     D   +K + D +++K  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKEK-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 LEQSSKVTVLMSCSKEAVKKGVDCGKVVKEICSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 VQTAENILK 874


>gi|317500249|ref|ZP_07958478.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087517|ref|ZP_08336451.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316898345|gb|EFV20387.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406269|gb|EGG85786.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 880

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/907 (38%), Positives = 515/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AIQ  W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVVGLDPN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY++D EAF++W K  G+ A++I +    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHGS-GPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++   +Y  E NN V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDHVCRLAEKEYGEEYNNDVSIRVITDHVRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +  +  L   +       YPEL + K  I   +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  ++S + K   +ILNG+ AF+LYDT+G PLD+ ++IL  +GL  +D   
Sbjct: 361 KTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGL-CVDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++E QR +AR           +   +   +    ++F+GY+ L              
Sbjct: 420 FKASMEVQRKKARDAREVTNYMGADVTVYESIDPNVTSEFVGYEHLTW------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + EI +    G+   V   +TPFYA +GGQ  DTG     
Sbjct: 468 -----------ESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTGYIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H  ++ +G++R+   +VL +D + R   + NHSATHLL  AL
Sbjct: 517 EGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +  D LRFD TH   +T  E+  +E  VN+ IA+   V  + M  E
Sbjct: 577 RTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIKNMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV++     G +S   CGGTHV++T EIM L IVSE+ + 
Sbjct: 637 EAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVSETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +EKLK+ A+ LK +  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHSEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++             ++  +  ++  I  VD   L+ + D L++K+  G+++L   S 
Sbjct: 752 KSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVLASGS- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S++   T+  + +  +A +L +  A  +GGGGG GRP+MAQ+GG N +    A+  
Sbjct: 811 DGKVSLMATATDGAMKKGAHAGNLVKAIAGCVGGGGG-GRPNMAQAGGKNPSGIQDALKK 869

Query: 892 VASFLKK 898
               L +
Sbjct: 870 AEEVLAE 876


>gi|257784262|ref|YP_003179479.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472769|gb|ACV50888.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 881

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/907 (39%), Positives = 513/907 (56%), Gaps = 46/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  G +  PSSSL+P  DP+L+  N+GM  FK  + G +       
Sbjct: 7   MTTAEIREDFLSFFESKGCKRYPSSSLVPS-DPSLLLANAGMNQFKEYYQGIKTMKEIGA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND+DN+G  +RH +FFEMLGNFSFGGY K  A   A + ++  +   
Sbjct: 66  TSCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TV+ +D+EA ++WK + G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 121 LPLDRLYFTVFTDDDEAIEIWKSL-GITEDHITRLGEEDNFWAAGPTGPCGPCSEIYFDQ 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  PG  ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 180 GPEFEGEAPG--DDGDRYLEFWNLVFTQFDRQEDGSLPELPHRNIDTGMGLERIAAIMQH 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +  NY+ D+ + LI   E+++G KY   +    + R++ DH R+ +F+I DGILP NEGR
Sbjct: 238 EGTNYEGDIMRTLISLGEKLSGKKYHSTDEIDRSLRILADHSRAVTFMIGDGILPGNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
            Y+LRR++RRA+ + RLLG     M      +   +G+ YPEL++   LI+  L +E+ER
Sbjct: 298 SYILRRLLRRAVYHGRLLGIQGTFMAEYAHEVAVLLGAEYPELVEKSALIDGILTAEEER 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG TLD G   L   L  L     L+G+VAF L+DT+G P+D+ ++I    G   +D+ +
Sbjct: 358 FGATLDAGESKLTAELEQLEDGAQLSGEVAFLLHDTYGFPIDLTREIAANAG-HVVDMDA 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A+ EQR RAR  +     G  + IW +L ++   T F GYD    S           
Sbjct: 417 FDAAMTEQRERARKSANRDAWGNAQSIWVALSDRLDETVFDGYDNNELSGVR-------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V A+VQ G+ VE A  G +VEVV D+TPFYAE GGQ+GDTG   G 
Sbjct: 469 --------------VVALVQDGQEVESATVGSEVEVVLDRTPFYAEMGGQVGDTGRLSGP 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ + +TD + +  G+  H  +VE G L    S+  TID   R  +  NH+ATHLL  AL
Sbjct: 515 GLYVHVTDTKHRDGGLESHIGVVEEGTLSIGDSVTATIDAGRRELIRRNHTATHLLDAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + PD +RFD TH + +T  EL  IE  VN  I    P+VT+IM+ E
Sbjct: 575 KKVLGDHVNQAGSLVAPDRMRFDFTHFEALTKDELDRIEGMVNAEIFAAKPIVTKIMSIE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA A+GA AL G KY D VRVVS   ED    S  LCGGTH  +T ++ L  I+SESS+ 
Sbjct: 635 DAKAAGAVALFGEKYGDVVRVVSAGTED-TPFSRELCGGTHARNTADLGLFKIISESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLI 773
           +  RRIEA+T   A  ++  +  +L  +A+ LKV    V  RVE++ ++ R    KL+  
Sbjct: 694 SNSRRIEAVTSMGAIEYVDERLAQLDEVAAALKVRPSAVADRVEQLQQDLRAANHKLEAA 753

Query: 774 HAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII--MLVGI 830
                     E L    ++   + +   +  +  KEL+S  D ++       +  ++   
Sbjct: 754 LTGAGSNQVAEALKSAVQLNGYSCVIAKLEGLSGKELRSAWDGIRDASDGQPVACVIASA 813

Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K S+L   T+  +   F+A D+ +  A+ + GG GGG+P MAQ+GG N    D A+
Sbjct: 814 TADGKVSLLAGATDSAVAAGFSAGDIVKEIAEFV-GGRGGGKPAMAQAGGSNAAGIDAAL 872

Query: 890 AGVASFL 896
               + L
Sbjct: 873 DAARTKL 879


>gi|315282412|ref|ZP_07870831.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613946|gb|EFR87671.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 864

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/901 (38%), Positives = 509/901 (56%), Gaps = 56/901 (6%)

Query: 14  FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGK 73
           FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    +   QK +R    
Sbjct: 1   FFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRT--- 57

Query: 74  HNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYD 131
            ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    D  +LY+TVY 
Sbjct: 58  -NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGFDPDKLYVTVYP 116

Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG----L 187
           EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G           
Sbjct: 117 EDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRGPSFGDDASDPE 173

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                E ERY+EIWNLVF QF          LPK +IDTGMGLERM +++Q+   N++ D
Sbjct: 174 LYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQDAPTNFETD 233

Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
           LF  +I+  EQ+ G+KY  +  N V  +VI DH+R+ +F I DG LP+NEGRGY+LRR++
Sbjct: 234 LFMPIIREVEQIAGVKYGQKQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGYILRRLL 293

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E+ERF +TL+ G
Sbjct: 294 RRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFHETLNEG 353

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L+ +L +  +  ++++ G   FKLYDT G P+++ ++     GL  +D   F   ++
Sbjct: 354 LAILETILKNAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VDHAGFEAEMK 412

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RAR+    + S   +     L      ++F+GY+                      
Sbjct: 413 EQRDRARSARADVKSMQVQGEL--LANLTEKSEFVGYNTTEH------------------ 452

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  ++Q   +V+E  +G++ +V+F +TPFYAE+GGQ+ D G    +     +
Sbjct: 453 -----VSEILYLIQNDTLVDEVAAGEEAQVIFKETPFYAESGGQVADKGTIESETGLAYV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHLLH AL   LG 
Sbjct: 508 EDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRALKDTLGE 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV   M   +A   G
Sbjct: 568 HVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPIAEAKELG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVSE+ I AG RRI
Sbjct: 628 AMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSETGIGAGTRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG+ A   +  Q+  LK  A+ LK +      +VE++  + R+++  +     +L  
Sbjct: 683 EAVTGKEAYRFVTEQENTLKHAANLLKTTTKETPQKVEQLQADLREVKRENESLLSKLAS 742

Query: 784 EDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              +       +I  V  ++  ++  D  +L+  +D  + K   G+++L  +  + K ++
Sbjct: 743 AASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLVLGAVQGD-KVNL 801

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  V+ED +   ++A  L +  A    GG GGGRP MAQ+GG N  +   A+  V++++K
Sbjct: 802 ISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELGTALDYVSTWVK 860

Query: 898 K 898
           +
Sbjct: 861 E 861


>gi|255026679|ref|ZP_05298665.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 879

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/912 (38%), Positives = 512/912 (56%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPXMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIIFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR+RARA    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +  
Sbjct: 807 GAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELR 864

Query: 887 QAIAGVASFLKK 898
            A+  V++++K+
Sbjct: 865 TALDYVSTWVKE 876


>gi|163942138|ref|YP_001647022.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229135211|ref|ZP_04264010.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|205829987|sp|A9VI09|SYA_BACWK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163864335|gb|ABY45394.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648253|gb|EEL04289.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 880

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  + ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|242373918|ref|ZP_04819492.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
 gi|242348472|gb|EES40074.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1]
          Length = 876

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/914 (37%), Positives = 505/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAYGQNDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E ++G KY       V  +VI DH+R+ +F IADG 
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENISGKKYLEVDEQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+  +    KD   + G+ AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLAILNQFIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LT-VDMATFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  ++  GE VE   +G+ V  +  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QSTITHLIYNGEEVESVEAGETVYFILKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +   + +T+V K   G  +H   V+ G       +  +++   RR +  NHSA
Sbjct: 508 DEGTVGNENFEIAVTEVTKAPNGQNLHKGTVQFGQATVGAEVDASVNKDERRAIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P++  E+  +E  VN+ I + + V
Sbjct: 568 THLLHQALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMSQEEIDQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  
Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV   + VVG++ ++ EE +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNNVKVKSDDQVVGKITQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I D+  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 NLLKQLEQRNKEITSLKMGNIEDQVETINDLKVLATEVDVPNAKAIRSTMDDFKSKLQDA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L       K S++  V + L D+  A DL +  A V+ GG GGGRP MAQ GG    
Sbjct: 803 IIVLASNVN-GKVSIIATVPKSLTDQVKAGDLIKHMAPVV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
           K  +A+  +  ++K
Sbjct: 861 KITEALRFIKDYIK 874


>gi|304321543|ref|YP_003855186.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303300445|gb|ADM10044.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 884

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/870 (47%), Positives = 565/870 (64%), Gaps = 32/870 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +++V+ IR  FL FF++  HE++PS+ L+P NDPTL+F N+GMVPFKN+FTG +K  Y  
Sbjct: 2   ITSVNDIRQAFLSFFEERDHEIVPSAPLVPQNDPTLLFINAGMVPFKNVFTGADKRPYDK 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW LLT+ F L
Sbjct: 62  AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIINAWTLLTEVFGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179
              +L +T++  D+EA  LWKKI+GL  ++IIRI T DNFWSM +TGPCGPCSEIF+D  
Sbjct: 122 PAEKLLVTIFHTDDEAASLWKKIAGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 181

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +   G      E+G+R+IEIWNLVFMQF+QQ   ER  LPK SIDTGMGLER+ATVLQ 
Sbjct: 182 PQIPGGPPGSPEEDGDRFIEIWNLVFMQFDQQPDGERLSLPKPSIDTGMGLERIATVLQG 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             NNY+ DLF+ LI AS  VTG    G++++ HRVI DHLR++SFLI+DG+ P+NEGRGY
Sbjct: 242 IHNNYETDLFRALIDASVDVTGRPATGDDLIAHRVIADHLRAASFLISDGVTPSNEGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM YA  LG  +PL+  L+PAL  EMG AYP+LI+ + L+++TLR E+ERF 
Sbjct: 302 VLRRIMRRAMRYAHGLGAKDPLLTQLVPALVAEMGGAYPDLIRGQSLVQDTLRVEEERFA 361

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
             LDRGL LL      L     L G+ AFKLYDT+G PLD+ +D L   G  G+D   F+
Sbjct: 362 DLLDRGLKLLADETQSLTPGGTLAGETAFKLYDTYGFPLDLTEDALRRAGY-GLDQAGFD 420

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  Q++RARA   G G  + E +WF +K   GAT FIGY                   
Sbjct: 421 AAMAAQKARARASWQGSGDASAETVWFDVKADSGATDFIGY------------------- 461

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
               +      +V A+ Q GE V E+ +G+++  V +QTPFYAE+GGQ GD G A G+ +
Sbjct: 462 ----VHEEAEGVVLAMAQNGERVAESGAGEEIAFVTNQTPFYAESGGQAGDAGTAEGEAV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           RL ITD +K A  + VH A +++G L+    L L +D + R ++  NHSATHL+H AL  
Sbjct: 518 RLVITDTKKGAGSLHVHQARIDKGTLKEGDVLRLKVDGKRRVRIKSNHSATHLVHAALRR 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV+Q GS + P+  RFD +H+  +T A++  +E  VN II QN      +M  EDA
Sbjct: 578 HLGDHVTQKGSFVGPESFRFDFSHNDGLTPAQIDEVEAEVNAIIRQNDAGQISLMPYEDA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG---VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           I++GA AL G KY D VRV+ +  +       +S  LCGGTHV+ TG+I L  IVSE ++
Sbjct: 638 ISAGAMALFGEKYEDEVRVLRLGEDPADPARPYSMELCGGTHVARTGDIALFAIVSEGAV 697

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774
            +G+RRIEA+TG+ AR++   +     + A+ LKVS  ++  R+ ++ +E +KL+  L+ 
Sbjct: 698 ASGVRRIEAVTGEAARAYYKERAASAAAAAAALKVSIADLPARLSQLMDERKKLEKDLVA 757

Query: 775 AKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           A++K  L   D      + D+ F+  ++  V +KEL+ ++   +KK +  I   +  + E
Sbjct: 758 ARKKAALGGGDGPRTETVGDITFVGQVVEGVPAKELRGLIADAKKKYEKVIAAFIATA-E 816

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            KAS+ + V++ L++++ A DL R+    L
Sbjct: 817 DKASLSVGVSDALIEQWPAPDLVRIGVDAL 846


>gi|229062084|ref|ZP_04199409.1| Alanyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229169132|ref|ZP_04296847.1| Alanyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614360|gb|EEK71470.1| Alanyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228717236|gb|EEL68911.1| Alanyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 880

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 532/916 (58%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   +G++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|153814718|ref|ZP_01967386.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756]
 gi|145847749|gb|EDK24667.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756]
          Length = 880

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/907 (38%), Positives = 515/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AIQ  W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVVGLDPN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY++D EAF++W K  G+ A++I +    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHGS-GPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++   +Y  E NN V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDHVCRLAEKEYGEEYNNDVSIRVITDHVRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +  +  L   +       YPEL + K  I   +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  ++S + K   +ILNG+ AF+LYDT+G PLD+ ++IL  +GL  +D   
Sbjct: 361 KTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGL-CVDEDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++E QR +AR           +   +   +    ++F+GY+ L              
Sbjct: 420 FKASMEVQRKKARDAREVTNYMGADVTVYESIDPNVTSEFVGYEHLTW------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V  +  + EI +    G+   V   +TPFYA +GGQ  DTG     
Sbjct: 468 -----------ESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTGYIRTA 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H  ++ +G++R+   +VL +D + R   + NHSATHLL  AL
Sbjct: 517 EGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +  D LRFD TH   +T  E+  +E  VN+ IA+   V  + M  E
Sbjct: 577 RTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIKNMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV++     G +S   CGGTHV++T EIM L IVSE+ + 
Sbjct: 637 EAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVSETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +EKLK+ A+ LK +  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHSEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++             ++  +  ++  I  VD   L+ + D L++K+  G+++L   S 
Sbjct: 752 KSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVLASGS- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K S++   T+  + +  +A +L +  A  +GGGGG GRP+MAQ+GG N +    A+  
Sbjct: 811 DSKVSLMATATDGAMKKGAHAGNLVKAIAGCVGGGGG-GRPNMAQAGGKNPSGIQDALKK 869

Query: 892 VASFLKK 898
               L +
Sbjct: 870 AEEVLAE 876


>gi|312793514|ref|YP_004026437.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180654|gb|ADQ40824.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 883

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/909 (37%), Positives = 521/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AF++YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKEIILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L            
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLEQD--------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E            V+ D+TPFYAE+GGQ+ D G   
Sbjct: 467 --------------AKILKIFLDNEETAYVKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S+V  ++ + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVNEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +A   ++   + LK L S +K S    ++ ++E++    + L+   
Sbjct: 688 VAAGVRRIEAITGNKAYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEV 747

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +L           +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I +  K ++L+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|303229350|ref|ZP_07316140.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515886|gb|EFL57838.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 872

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/907 (37%), Positives = 498/907 (54%), Gaps = 55/907 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQHCKT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           + A++EQR RAR   +                               +K    D   L  
Sbjct: 416 DAAMKEQRERAREARVK----------------------------EDAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++     +S V  + +  E ++ AV G ++ V+   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIVGPM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ ++
Sbjct: 568 RVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SES I +
Sbjct: 628 AKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--- 775
           G+RRIEAITG+ A          ++ +A  LK     V  R+ ++  E ++         
Sbjct: 683 GVRRIEAITGRAALDAAKHDRLTIERIAGELKTKPAQVEERLHQVLVEAKETAKELDQIR 742

Query: 776 KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISK 832
           K        D+   K  I DV F++  +      EL+   D    K+  SG++++     
Sbjct: 743 KEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGAAMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K   A+  
Sbjct: 803 DDKVNFVCKVSKDVVGKGVKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMDALKA 861

Query: 892 VASFLKK 898
               +K+
Sbjct: 862 AGEAVKE 868


>gi|315651872|ref|ZP_07904875.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315485874|gb|EFU76253.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 885

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/905 (38%), Positives = 509/905 (56%), Gaps = 46/905 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FLEFF+  GH ++ S SL+P ND +L+  NSGM P K  FTGQE P  + V T
Sbjct: 12  VNQIRKKFLEFFESKGHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVCT 71

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 72  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLDPN 127

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W K  G+ AD+I +    DNFW   E GPCGPCSE+++D+GE  
Sbjct: 128 RLYPSVYLDDDEAFEIWNKEIGIPADRIYKFGKEDNFWEHGE-GPCGPCSEVYYDRGEKY 186

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   + +RY+EIWN VF QF    K     L + +IDTGMGLER+A  LQ+  
Sbjct: 187 GCGKPTCTVGCDCDRYMEIWNNVFSQFNSDGKGNYTELIQKNIDTGMGLERLAVALQDVE 246

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D  K L+    ++    Y+ +    V+ R+I DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 247 SIFEVDTIKALLDKVAELAHTSYKEDEKKDVSLRLITDHIRSCTFMISDGIMPSNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R+LG  +  + +L   +       YPEL + K +I + L  E+ +F 
Sbjct: 307 VLRRLLRRAARHGRMLGIKDTFLANLANKVIELSKDGYPELEEKKEMILKVLTEEENKFN 366

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +  +L K    I++G+ AF+LYDT+G PLD+ ++I+  +G + +D   
Sbjct: 367 KTIDQGLSILSDIEENLSKSGQRIISGEDAFRLYDTYGFPLDLTKEIIEEKGFS-VDEDG 425

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+A+E QR++ARA          +   +   +    + F GYD L              
Sbjct: 426 FNKAMEAQRNQARAARKATNYMGADVTIYQSLDPKLTSVFEGYDSLTD------------ 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +  + A+  + EIVE    G    ++ D+T FYA  GGQ  D G     
Sbjct: 474 -----------TGKITALTTEDEIVEAVAEGDHGTIILDKTSFYATMGGQNADIGIIKTA 522

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + DV K       H   V +G+ +   ++   +D +NRR+ + NHSATHLLH AL
Sbjct: 523 NSVFNVVDVIKLGGNKIGHVGYVSQGMFKLGDTVETVVDAENRRRTAANHSATHLLHKAL 582

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS +    LRFD TH K ++  EL  +E  VN  I ++LPVVT +M+ E
Sbjct: 583 REVLGNHVEQAGSYVDARRLRFDFTHFKSLSKEELDDVEALVNREINKSLPVVTDVMDVE 642

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A  SGA AL G KY   VRVVS+     G  S  LCGGTHV +T +I L  I+S++ I 
Sbjct: 643 SAKKSGAMALFGEKYQKDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKIISDNGIA 697

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T           + ++   A  LK ++  +V + E + EE + L+  + K 
Sbjct: 698 AGVRRIEALTNDGVIEFYKNIENRMNECAKLLKTNENELVSKTESVLEEIKTLKSENEKL 757

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  E L     S  +I  + F++  +S V+  EL+++ D L+  +  G+++L     
Sbjct: 758 KAKLASEALGDSKESIEEIGGIKFIAMHVSGVEMNELRNLGDKLKSDVDDGMVVLASDVD 817

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K   + +   + L    +A ++ +  A ++GGGGG GRP++AQ+GG N      A+   
Sbjct: 818 GKVNLLCMAGDKALAVGAHAGNIIKGIAAIVGGGGG-GRPNIAQAGGKNPKGIKDALDKA 876

Query: 893 ASFLK 897
               K
Sbjct: 877 KEVFK 881


>gi|312875971|ref|ZP_07735960.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797169|gb|EFR13509.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 883

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++AF++YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L            
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLEQD--------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E            V+ D+TPFYAE+GGQ+ D G   
Sbjct: 467 --------------AKIFKIFLDNEETAYVKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K  +G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++    + L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEV 747

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +L           +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I +  K ++L+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|312622432|ref|YP_004024045.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202899|gb|ADQ46226.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 883

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/909 (38%), Positives = 522/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VTG  Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+L   E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLDKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  +LNG++AFK+YDT+G PLD+ ++I   +G+  ID 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLK----------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E    A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 465 ------------QEAKILKIFLDNEETAYAKEEDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS +TPD LRFD  H +P++  +L  IE  +N+II Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEKMINNIIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L++  
Sbjct: 688 VAAGVRRIEAITGNKVYGFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEI 747

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +L           +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + +  K +VL+  +++ + +  +   + +    VL GG GGGRP  AQ GG + +K D A
Sbjct: 807 LEQSSKVTVLMSCSKEAVKKGVDCGKVVKEICSVL-GGKGGGRPDFAQGGGNDISKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|82751218|ref|YP_416959.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123547858|sp|Q2YT60|SYA_STAAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|82656749|emb|CAI81178.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122]
          Length = 876

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/909 (37%), Positives = 510/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +  
Sbjct: 6   ASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ +W K  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PDKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF +F          LP  +IDTGMGLERMA+V 
Sbjct: 179 AYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLERMASVS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  ++   E+V+G +Y  NN   V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++         +NG  AFKLYDT+G P+++ ++I    GL  +D
Sbjct: 359 ERFHETLEDGLAILNELIKKAKATTNEINGKDAFKLYDTYGFPIELTEEIAVQAGLK-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +++QR RAR       S   +     LK    A+ F+GYD             
Sbjct: 418 MTTFESEMQQQRDRARQARQNSQSMQVQSEV--LKNITSASTFVGYDT------------ 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  ++  GE V +  +G+ V  +  +TPFYA +GGQ+ DTG  
Sbjct: 464 -----------ATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAVSGGQVADTGIV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + +++V K   G  +H   V+ G +    ++   ++  +RR +  NHSATHLLH
Sbjct: 513 YNDNFEIAVSEVTKAPNGQNLHKGAVQFGQVNVGATVSAEVNQNDRRDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL ++LG HV+Q GS +  D LRFD +H  P+T+ E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEIWKGIDVNIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 DIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTSEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKL--Q 771
              AG+RRIEA+TG+ A  +L    EK  ++ S +KV   + V+ ++ ++ +E + L  Q
Sbjct: 688 GTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVIDKLTQLQDEEKALLKQ 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           L    +++          ++ ++N    +++EVD   +K ++S MD  + K+Q  II+L 
Sbjct: 748 LEQRDKEITSLKMGNIEDQVEEINGYKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             + + K S++  V + L +   A DL +  A ++  G GGGRP MAQ GG       ++
Sbjct: 808 S-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIVS-GKGGGRPDMAQGGGTQPENISKS 865

Query: 889 IAGVASFLK 897
           ++ +  ++K
Sbjct: 866 LSFIKDYIK 874


>gi|317471795|ref|ZP_07931133.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900721|gb|EFV22697.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 879

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/911 (39%), Positives = 526/911 (57%), Gaps = 52/911 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +  V+ +R  FL+FF+   H ++ S SL+P ND +L+  N+GM P K  FTGQE P  
Sbjct: 1   MKSYGVNELRKMFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+  
Sbjct: 61  TRVATCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVV 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY +D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDPERLYPSVYLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P  +   E +RY+E+WN VF QFE         L   +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGSPDCTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +QE  + +D+D  K +     ++ G+ Y  +  N ++ RVI DH+RS+SF+I+DG++P+N
Sbjct: 236 VQEVDSIFDVDTIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + R+LG  E  +  L   +  E    YPEL + +  I + L +E
Sbjct: 296 EGRGYVLRRLIRRAARHGRMLGMKELFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTE 355

Query: 355 DERFGKTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +E+F +T+D+GL +L   +  +S  GK E L G  AFKLYDT+G PLD+ ++IL  +G++
Sbjct: 356 EEQFNRTIDQGLQILADMEEAMSREGKKE-LAGKDAFKLYDTYGFPLDLTKEILEEKGIS 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F +A+E+QR +AR           +   +   +    ++F+GYD L        
Sbjct: 415 -VDETGFQKAMEQQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S + A+     + +  V GQ+  ++  +TPFYA +GGQ  D 
Sbjct: 466 ---------------TCESEIIAMTTDKNLTDSLVEGQRGTIICSRTPFYATSGGQEADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  + +     + DV K + G F H   V  G L     ++L ++ +NRRQ   NHSATH
Sbjct: 511 GVILSENSSFAVEDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL T+LGSHV Q GS      LRFD TH  P+TS E+K +ED VN+ IA N PV T
Sbjct: 571 LLQKALRTVLGSHVEQAGSSNNAKHLRFDFTHFSPMTSEEIKKVEDIVNEEIAANRPVET 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           ++M+ ++A  +GA AL G KY D VRVVS+     G  S  LCGGTHV++TG I +  I+
Sbjct: 631 KLMSMDEAKNTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITVFKIL 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ + AG+RRIEAIT +    +    +E+L   A  +K +   ++ R+E +  E ++L 
Sbjct: 686 SETGVAAGVRRIEAITDKAVFEYYEKMEEELMEAAKVVKSTPAKLMARLEALMTELKELH 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K +L  + L         +  V  ++  +++VD   L+ + D+L++K+  G+I+
Sbjct: 746 SENESLKSKLAKDALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L   S   K  ++ + T+       +A +L +  A  +GGGGG GRP+MAQ+GG      
Sbjct: 806 LAS-SLGGKVFLVAMATDGAQKAGAHAGNLIKGIAGCVGGGGG-GRPNMAQAGGKKPEGI 863

Query: 886 DQAIAGVASFL 896
           D AIA     L
Sbjct: 864 DDAIAKAKEEL 874


>gi|166030431|ref|ZP_02233260.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
 gi|166029789|gb|EDR48546.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
          Length = 893

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 513/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 21  VNELRRMFLEFFESKDHLALKSFSLVPHNDKSLLLINSGMAPMKPYFTGQEIPPRRRVTT 80

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 81  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTEVVGLDPE 136

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY+ D+EA+++W K  G+ A++I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 137 RLYPSVYENDDEAWEIWNKEIGVPAERIFRFGKEDNFWEHGS-GPCGPCSEVYYDRGEKY 195

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   E +RY+EIWN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 196 GCGKPGCTVGCECDRYMEIWNDVFSQFNNDGHGNYSDLAQKNIDTGMGLERLACVVQDVD 255

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  K L      ++G  Y  +    V+ RV+ DH+RS +F+I+DGI+P+N GRGY
Sbjct: 256 SMFDIDTMKALRDHVCAMSGKHYGIDHETDVSLRVVTDHIRSVTFMISDGIMPSNSGRGY 315

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     ++ L   +       YPEL + K  I   +  E+ +F 
Sbjct: 316 VLRRLLRRACRHGRLLGIEGAFLVELAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 375

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + K+   +L+G+ AFKLYDT+G P+D+  +IL  +GL   D   
Sbjct: 376 KTIDQGLSILADMEEEMKKNGETVLSGENAFKLYDTYGFPIDLTSEILEEKGLTY-DKEG 434

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A +EQR+++            +   +   +   AT+F+GY+ L              
Sbjct: 435 FEKAQKEQRAKSEGTFGTHSYTGKDATVYDELDAKLATEFVGYENL-------------- 480

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+  + EIV+    G+K  ++ D+T FY   GGQ GD G     
Sbjct: 481 ---------VCDAKVTALTSEEEIVDALSDGEKGTIIVDKTTFYGTMGGQEGDIGTIKTA 531

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + +    A     H   V  G+++   ++ + +D +NR   + NHSATHLL  AL
Sbjct: 532 DGEFVVENTIHLAGTKIGHVGYVSHGMIKVGDTVSMEVDKENRNLSARNHSATHLLQAAL 591

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS +  + LRFD TH   ++  ELK +E+ VN+ IA+ LPVV + M  E
Sbjct: 592 RQVLGTHVEQAGSYVDAERLRFDFTHFSALSKEELKQVENIVNEKIAECLPVVAKNMPIE 651

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GAAAL G KY D VRVVS+     G  S   CGGTHVS+TG I  L I+SE+ + 
Sbjct: 652 EARKTGAAALFGEKYGDVVRVVSM-----GDFSVEFCGGTHVSNTGVISALKIISETGVA 706

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    ++KL+  A+ +K +   +  ++  +  E + L       
Sbjct: 707 AGVRRIEALTSKGLLKYYDDMEKKLQEAAALVKATPNQLSDKIRHLQAENKDLHSELESV 766

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E +        ++  V  ++  + +VD   L+ + D L++K+  G+I+L   + 
Sbjct: 767 KSKMAKEAMGDVSDQVTEVKGVKLIAAKVDDVDMNGLRDLGDQLKEKLGEGVIVLASAA- 825

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++ + T++ + +  +A +L +  A ++GGGGG GRP+MAQ+GG N +  D AIA 
Sbjct: 826 GGKVSLVAMATDEAVKKGAHAGNLIKGIAGLVGGGGG-GRPNMAQAGGKNPDGIDAAIAK 884

Query: 892 VASFLK 897
           V+  L+
Sbjct: 885 VSEVLE 890


>gi|242242892|ref|ZP_04797337.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233667|gb|EES35979.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 876

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/911 (37%), Positives = 515/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EA+++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GLAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDDSQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+ A +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLLTHIIYNGEEVKHAEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  +V+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNENFEINVTDVTKAPNGQNLHKGVVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE ++L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQLQEEEKELL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L+L   +     I D+  ++  +   + K ++S+MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKLGNIEEQVELINDLKVLATEVEIPNPKAIRSIMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVGQV-DGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|302391203|ref|YP_003827023.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302203280|gb|ADL11958.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 875

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/907 (39%), Positives = 546/907 (60%), Gaps = 49/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F+  GH +LPS+ L+P NDP+L++ N+GM PFK  F GQ  P    +
Sbjct: 3   MTSKEIRQKFLDYFESKGHLILPSAPLVPQNDPSLLWINAGMTPFKPYFNGQATPPKTRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R     ND+ NVG+T+RHHTFFEMLGNFSFG YFKE AI+ ++D L  E +L 
Sbjct: 63  VTSQKCIRT----NDIGNVGKTDRHHTFFEMLGNFSFGDYFKEEAIKWSYDFLVNEIELK 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           Q RL+I++Y +DEEAF++WK   G+  ++I+R+  ++NFW +  TGPCGPCSEI +D G 
Sbjct: 119 QDRLWISIYKDDEEAFEIWKNKIGIPTERIVRMGKDENFWQIG-TGPCGPCSEIHYDLGA 177

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                       + +RY E+WNLVF Q++     E   LP  +IDTGMGLER+A+++Q+ 
Sbjct: 178 EFGCSDNCDFGCDCDRYREVWNLVFTQYDYTEDGEYKTLPSKNIDTGMGLERLASIIQQV 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGRG 298
            +N++ DLF  +I+   + T   YE ++ +   +RVI DH+RS +  I DG+LP+NEGRG
Sbjct: 238 DSNFETDLFIPIIEFISEHTEYDYESSDEIKSAYRVIADHIRSVTLAIGDGVLPSNEGRG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y++RR++RRA+ YA+ L    P +  ++P +   MG+ Y E+   +  I++T++SE+ +F
Sbjct: 298 YIIRRVLRRAVRYAKKLDLKLPFLHRIVPVVVDIMGNEYTEIADKEEQIKKTIKSEEVKF 357

Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD+G+V+L+ ++  L  +  E++ GD  F LYDT+G P ++ ++I   RG   ID  
Sbjct: 358 QETLDQGMVILEELIDELEGEGREVIPGDEVFTLYDTYGFPKELTEEIAQERGYR-IDSE 416

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F +A+EEQR+RARA        + E +++  L+++    +F+GY               
Sbjct: 417 GFEEAMEEQRARARAAQKDHDWSSAEIELFKELRDEIEMPEFVGYTQPE----------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V  I++  E+V+   +G++ +VV  +TPFYAE+GGQ+GD G  +
Sbjct: 466 ------------CETEVVKIIKDNELVDSLSAGEEGQVVLTKTPFYAESGGQIGDKGALL 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D I + + D Q+KAE +  H  ++E G L     L   I    R  +  NH+ATHLLH 
Sbjct: 514 SDDITVTVVDTQEKAE-LISHQVVIEAGKLSVGDKLTAKIQTDQRIYIRRNHTATHLLHQ 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV Q+GS +TP+ LRFD TH + ++  ELK IE+ VN +I +NL V      
Sbjct: 573 ALRDILGEHVDQSGSLVTPERLRFDFTHFEAVSEEELKEIEERVNQVIRKNLEVEVLKTT 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GAAAL   +Y+D VRV+ +     G +S  LCGGTHV + GEI L  I SE  
Sbjct: 633 LEEAKKMGAAALFSEQYDDEVRVIKI-----GDYSLELCGGTHVDAAGEINLFKITSEGG 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI-- 773
           I AG+RRIEA+TG+ A +++  Q++ LK  A+ LK +   VV ++E++  + + L+    
Sbjct: 688 IAAGVRRIEAVTGKEALNYINQQEDILKEAAAALKANPEEVVEKIEKLQSKIKDLEAEVT 747

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL  +  D     I ++N ++ ++ EV   D++ L+++ D +++++ SGII+L   
Sbjct: 748 KFKNKLADSQADEVASDIEEINGINVVLEEVEGLDAEGLRTMGDNIKEELDSGIIILASK 807

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + +VT+DL+D  +NA  +    A+V GGGGG GRP MAQ+GG   +K D A 
Sbjct: 808 LGE-KVLFVSLVTDDLVDEGYNAGQIIGEVARVAGGGGG-GRPDMAQAGGSQPDKLDAAF 865

Query: 890 AGVASFL 896
                 +
Sbjct: 866 KKARELI 872


>gi|303245636|ref|ZP_07331919.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302492899|gb|EFL52764.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 880

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/907 (41%), Positives = 520/907 (57%), Gaps = 40/907 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF   GH+ + SS LIP  DP+L+FTN+GMV FK +F GQ+KP Y+ 
Sbjct: 1   MMTAHEIRAKFLDFFAAQGHQKVASSPLIPREDPSLLFTNAGMVQFKKVFLGQDKPGYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EAF LW+K++GLS D+I R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 DKSRLYATVYQDDDEAFGLWQKVAGLSPDRIYRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G      + + +RY+EIWNLVFMQ++Q    ER  LP+ SIDTGMGLER+A V+Q
Sbjct: 181 EEVSCGPDCGIGTCDCDRYLEIWNLVFMQYDQLESGERVALPRPSIDTGMGLERIAAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DIDLF+ +I  +  + G+ Y          RVI DH R+ +FL+ADG++P+NEG
Sbjct: 241 GVHSNFDIDLFQTIIATAASIAGVTYGATDEQDTALRVIADHSRAVAFLVADGVMPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +L+G ++P +      +   MG AYPEL+  +  +E  +R E+E
Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLFKTAGTVVEVMGDAYPELVATRDFMERMVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+GL +L   L       ++ + G  AFKLYDT+G PLDI+ D+   RG+   D
Sbjct: 361 RFGVTLDKGLAILAEELDRMEAAGEKTITGQFAFKLYDTYGFPLDIVNDVAGKRGITT-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              +   + EQ++RA+    G G      ++  L E    ++F+GY+ L           
Sbjct: 420 EDGYKACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYETL----------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S +   I  +G+ VE   +G+    V   TPFY E+GGQ GD G  
Sbjct: 469 -----------TAQSRVNALISAEGQAVERLTAGETGYAVCAVTPFYGESGGQAGDVGAI 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   +T   K    +  HH  +  G +  +    L +D   R   + NH+ THLLH
Sbjct: 518 TTLTGNATVTGTIKAGPELTAHHITIAAGEILLDQEADLAVDTAVRAATARNHTCTHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV+Q GS +TPD LRFD TH   +T  EL  +ED VN  I  + PV T ++
Sbjct: 578 KALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELSRVEDEVNAAILLDAPVTTEVL 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A A GA AL G KY D VRVV V        S   CGGTH+S+TG+     I++ES
Sbjct: 638 PLEAARAKGATALFGEKYGDTVRVVEVPG-----VSMEFCGGTHLSATGQAGSFLILAES 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG RRIEA TG     H+     +L       K   G + GR++++ ++ R L    
Sbjct: 693 GVAAGTRRIEAATGLNTIKHVREMRGELDESLHAAKAKAGELPGRIKKLQDDIRALTKEK 752

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   +L             +I  V  +   +   + K L+  MD L+ K+ SG++ +  
Sbjct: 753 EQLAAKLASGQGRDLLSGLEEIGGVKVLCAKVDAPNIKALREAMDDLRSKVPSGVVAIAA 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                K S+++ V++DL  RF A  L + +A  +GG GG GRP MAQ+GG N    ++A 
Sbjct: 813 EQDGGKVSLIVAVSKDLHGRFTAPALIKEAAAAVGGSGG-GRPDMAQAGGTNPAGIEEAF 871

Query: 890 AGVASFL 896
           A V + +
Sbjct: 872 AKVRAVV 878


>gi|193213512|ref|YP_001999465.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193086989|gb|ACF12265.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 885

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/923 (36%), Positives = 505/923 (54%), Gaps = 69/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF    H ++ S+ +IP  DPTL+FTN+GM  FK++F G+    Y   
Sbjct: 1   MNSREIRQSFLDFFAAKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTDVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE+FKLW+  + +    I++    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 KERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GG P  +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  VLQ K+
Sbjct: 181 DGSGG-PLVNVGDHRVIELWNLVFIQYDRQADGSLQPLPQKHVDTGMGFERVTAVLQGKS 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L +   ++TG++Y    +    +  RVI DH R+ +F ++DG +P NEGR
Sbjct: 240 SNYDSDVFTPLFEKITELTGVRYTASLDSATDIAMRVIADHCRTLTFALSDGAMPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YA  LG  EP+M  ++  L   MG  +PEL + +  +E+ +R+E+E 
Sbjct: 300 GYVLRRILRRAVRYAGTLGCHEPIMYKMVEVLVRTMGDVFPELEKQQPTVEKIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL RG  + + V++ +       ++G+ AFKLYDT G PLD+ + +    G  GID 
Sbjct: 360 FLVTLGRGTEIFNEVVAGMKTSGSTTISGEDAFKLYDTFGFPLDLTRLMAAEVGF-GIDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   + EQ++RAR           +   +        T+F+GYD L  S         
Sbjct: 419 EGFEHCMTEQKTRARMDRKDKMQVQDDGGEWQWFAPEAPTEFVGYDTLETS--------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + A+            G ++ VV D+TPFYAE+GGQ+GD G   
Sbjct: 470 --------------ATLTAVKTG---------GDRLMVVLDRTPFYAESGGQVGDHGTIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILR------------TEMSLVLTIDYQNRRQL 583
            D  RL +TD +K  E + +H     R  +R              +S+   +D   R   
Sbjct: 507 TDDYRLDVTDTRKDGE-LVIHFVTSARDKVRDCAVSPADLSFEGAVSVEAAVDRDRRVAT 565

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG HV Q GS +TP+ LRFD +H   ++  E++ +E  VN  I
Sbjct: 566 ERNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSPEEMEQVEHEVNAQI 625

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +   V     +  E+A+  GA A  G KY DRVRVV V        S  LCGGTHV + 
Sbjct: 626 RKAAGVTKHADVPYEEALELGALAFFGDKYADRVRVVDVPG-----ISIELCGGTHVGNI 680

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVE 761
           G+I ++ IVSESS+ AGIRRIEA+TG  A + L  +   L+ + + LK+      G +++
Sbjct: 681 GQIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRNLQEIKNLLKLKADEEAGPKIK 740

Query: 762 EIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           E+ +E + L     + +L     QL+    S  +I     M+  +  +   EL+    AL
Sbjct: 741 ELLDEKKALDKQLQESRLSGLLNQLSATLASAAEIGGCRIMTEQLDGLGGDELRQAAVAL 800

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM 874
           +++      +L  ++ + K  ++   +++ +   + NA  L + +A  + GG GGG+P +
Sbjct: 801 REQASCAAGLLCSVT-DGKVFLVGFASDEAVKLKKINAGKLVKEAAACVKGG-GGGKPEL 858

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG + +   +AI    + +K
Sbjct: 859 ATAGGKDPDGIGKAIETFVASVK 881


>gi|212638588|ref|YP_002315108.1| alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|212560068|gb|ACJ33123.1| Alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 877

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/912 (40%), Positives = 534/912 (58%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRQMFLDFFKEKGHAVEPSASLIPIDDPSLLWINSGVATLKKYFDGRVIPDNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +T++ EDEEAF +W    GL  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DPNRLSVTIHPEDEEAFDIWHNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E   G  P   E     E ERY+E+WNLVF QF          LPK +IDTGMGLERM +
Sbjct: 178 EQF-GNDPNDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           +LQ+   N+D DLF  +I+A+EQ++G  Y  +    V  +VI DH+R+ +F I DG LP+
Sbjct: 237 ILQDVPTNFDTDLFMPIIRATEQISGETYRTDAEKDVAFKVIADHIRTVTFAIGDGALPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I++ +++
Sbjct: 297 NEGRGYVLRRLLRRAVRYAKQLNIQRPFMYELVPVVGEIMVDYYPEVKEKASFIQKVIKN 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +TL+ GL +L  V+    +   + ++G+  F+LYDT+G P+++ ++     G+ 
Sbjct: 357 EEERFHETLNEGLAILASVIEKEKQRGSDTISGEDVFRLYDTYGFPVELTEEYAEEEGMK 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F + +E QR RARA    + S   +     L +    + F+GYD L        
Sbjct: 417 -VDHAGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKVESTFVGYDQL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +SS+V+ IV+ G++V E   GQ+ +V+  +TPFYAE+GGQ+ D 
Sbjct: 466 ---------------SISSVVEVIVKDGQLVNEVSEGQEAQVILRETPFYAESGGQIADR 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+  +  + DVQK   G  +HH +VE+G+++T  + +  +D   R  +  NH+ATH
Sbjct: 511 GWIEGETGKAYVKDVQKAPNGQHLHHIVVEQGVIQTNGTYIAHVDEAARVDIVKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ I +NL V  
Sbjct: 571 LLHQALKDVLGVHVNQAGSLVAPDRLRFDFTHFGQVKQEELEQIEAIVNEQIWRNLSVAI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                ++A A GA AL G KY D VRVV V     G +S  LCGG HV++T EI L  IV
Sbjct: 631 EYKPLDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A   +  Q   LK +A  LK +  +V+ R++ +  + R+LQ
Sbjct: 686 SESGIGAGTRRIEAVTGKAAYRLMNDQIALLKEVAEKLKTNPKDVLTRIDTLMNDMRELQ 745

Query: 772 LIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +     +L     E+L     ++  V  ++  ++  D   L++++D L++K+ S II+
Sbjct: 746 RENESLAARLSHMEAENLVNQVKEVNGVPLVTSKVNNADMNSLRAMVDDLKQKLGSAIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L  + +  K +++  VT DL+DR ++A  L +  A   GGGGG GR  MAQ+GG + NK 
Sbjct: 806 LASVQQN-KVNLIAGVTNDLIDRGYHAGKLIKEVATRCGGGGG-GRADMAQAGGKDANKV 863

Query: 886 DQAIAGVASFLK 897
           D+A+  V  ++K
Sbjct: 864 DEALKFVEQWVK 875


>gi|312127607|ref|YP_003992481.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777626|gb|ADQ07112.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 881

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/909 (37%), Positives = 520/909 (57%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL  D+I R+   DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 119 RERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGE 177

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++E WNLVF QF++        L   +IDTGMGLER+A ++QE
Sbjct: 178 EKGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHKLKNPNIDTGMGLERIAAIMQE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     +VT  +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     + YPEL+Q    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL +L+  +  L K++  ILNG++ FK+YDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDVGLEILESEIEKLKKNKETILNGEIVFKMYDTYGFPLDLTKEIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +++Q+ RARA    L +   + I   + E    T F+GYD L+           
Sbjct: 417 ERFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTLK----------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I    E    A       V+ D+TPFYAE+GGQ+ D G   
Sbjct: 465 ------------QEAKILKIFLDNEETAYAKEDDVCFVILDKTPFYAESGGQVADKGILE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+G+  ++ DV+K   G  +H   V +G +    S+V  +D + R     NH+ATHLLH 
Sbjct: 513 GEGVLAEVLDVKKGPRGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG H  Q+GS ++PD LRFD  H +P++  ++  IE  VN++I Q +PV   + +
Sbjct: 573 ALRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A+  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK L S +K S    ++ ++E++  + + L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLENEV 747

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL +   +L           +   + +     D   +K + D ++++  S  I+L  
Sbjct: 748 EKYKLLVVENELSSLYSKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKER-DSKAIVLNI 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I +  K ++L+  +++ + +  +   + +    VL GG GGGRP  AQ GG +  K D A
Sbjct: 807 IQQGSKVTILMSCSKEAVKKGVDCGKVVKEVCSVL-GGKGGGRPDFAQGGGNDVLKIDMA 865

Query: 889 IAGVASFLK 897
           +    + LK
Sbjct: 866 LQTAENILK 874


>gi|294792102|ref|ZP_06757250.1| alanine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457332|gb|EFG25694.1| alanine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 871

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 498/906 (54%), Gaps = 55/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGCKT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQR RAR   +                               +K    D   L  
Sbjct: 416 EAAMKEQRERAREARVK----------------------------EAAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVGPM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ ++
Sbjct: 568 KVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I +
Sbjct: 628 AKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--- 775
           G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++         
Sbjct: 683 GVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEDRLHQVLAEAKETAKELEQIR 742

Query: 776 KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISK 832
           K        D+   K  I DV F++  +      EL+ + D    K+  SG++++     
Sbjct: 743 KEVSAAGAADIVAGKVVIGDVEFVAAAVKASSIDELRDLADLGLDKLNGSGVVLVGAAMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A+  
Sbjct: 803 DDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEALKA 861

Query: 892 VASFLK 897
               LK
Sbjct: 862 GGEALK 867


>gi|56421091|ref|YP_148409.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|81557818|sp|Q5KWU5|SYA_GEOKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56380933|dbj|BAD76841.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
          Length = 887

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/921 (39%), Positives = 527/921 (57%), Gaps = 67/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRIC 64

Query: 63  ---------TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
                      QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ 
Sbjct: 65  IVPENPRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEF 120

Query: 114 LT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LT  K    D  RL +TV+ EDEEA+ +W+   GL  ++IIR+    NFW + E GP GP
Sbjct: 121 LTSDKWIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGP 177

Query: 172 CSEIFFDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
            +EIF+D+GE   G  P   E     E +RY+E+WNLVF QF          LPK +IDT
Sbjct: 178 NTEIFYDRGEAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLERM ++LQ+   N++ DLF  +I+A+EQ+ G +Y  + +  V  +VI DH+R+ +F
Sbjct: 237 GMGLERMCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTF 296

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGYVLRR++RRA+ YA+ +G   P M  L+P +   M   YPE+ +  
Sbjct: 297 AIGDGALPSNEGRGYVLRRLLRRAVRYAKHIGIDRPFMYELVPVVGEIMHDYYPEVKEKA 356

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I   +R+E+ERF +TL  GL +L  V+    +   +++ G+ AF+LYDT+G P+++ +
Sbjct: 357 DFIARVIRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTE 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     G+  +D   F + +E QR RARA    + S   +     L +    ++F+GYD 
Sbjct: 417 EYAAEAGMT-VDHAGFEREMERQRERARAARQDVDSMQVQG--GVLGDIKDESRFVGYDE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                         +S V AIV+ G +VEE  +G++ +++ D TPFYA
Sbjct: 474 L-----------------------VAASTVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G    +     + DVQK   G  +H  IVERG ++        +D   R +
Sbjct: 511 ESGGQIADQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKRMR 570

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATHLLH AL  +LG HV+Q GS + PD LRFD TH   +   EL+ IE  VN+ 
Sbjct: 571 IVKNHTATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQ 630

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I ++LPV       E+A A GA AL G KY D VRVV V     G +S  LCGG HV +T
Sbjct: 631 IWKSLPVDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNT 685

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             I L  IVSES I AG RRIEA+TG+ A   +  Q   L+  A  LK S   +  R++ 
Sbjct: 686 SAIGLFKIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDG 745

Query: 763 IWEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           ++ E ++L+  +     +L     +    ++ DVN +  + ++V   D  +L+++ D L+
Sbjct: 746 LFAELKELERENESLAARLAHMEAEHLTRQVKDVNGVPVLAAKVQANDMNQLRAMADDLK 805

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +K+ + +I+L   ++  K  ++  VT+DL+ + F+A  L +  A   GGGGG GRP +AQ
Sbjct: 806 QKLGTAVIVLAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRCGGGGG-GRPDLAQ 863

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG + +K  +A+  V +++K
Sbjct: 864 AGGKDPSKVGEALGYVETWVK 884


>gi|229013606|ref|ZP_04170737.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228747665|gb|EEL97537.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 880

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/916 (38%), Positives = 531/916 (57%), Gaps = 59/916 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL+FFQ+ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKQLTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L +T++ EDEEAF +W +  G+  ++IIR+   +NFW + E GP GP +EIF
Sbjct: 117 WIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289
           M +++Q+   N+D DLF  +I A+E ++G KY   +    +  +VI DH+R+ +F + DG
Sbjct: 234 MTSIVQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+ Y++ L    P M  L+P +   M   YPE+++ K  I +
Sbjct: 294 ALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +++E+ERF +TL  G  +L  V++     K  +++G  AF+LYDT+G P+++ ++    
Sbjct: 354 VVKNEEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G+  +D   F   +E+QR RARA    + S   +     L E   A++F+GY  +    
Sbjct: 414 AGMT-VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYGTVAT-- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V A+V+ GE  +   + ++ +++ D TPFYAE+GGQ
Sbjct: 469 ---------------------ESNVVALVKNGEYTDSLQADEEGQLMLDVTPFYAESGGQ 507

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G  + DG+++ + DVQK   G  +H  +VE G L  E ++   ID +NR  +  NH
Sbjct: 508 IADRGYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+HV+Q GS +T + LRFD +H   + + EL+ IE  VN+ I +++
Sbjct: 568 TATHLLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V       E+A   GA AL G KY D VRVV V     G +S  LCGG HV +T  I +
Sbjct: 628 DVAISQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IV+ES I AG RRIEA+TG+ A   +  Q   LK  A  +K +  +++ RV+ ++ E 
Sbjct: 683 FKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEV 742

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++LQ  +     +L+  +      S   +  VN ++  ++  D   L+++MD L+ K++S
Sbjct: 743 KQLQKENESLAAKLSNIEAGNLTDSVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLES 802

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L  +  + K ++L  VT+DL+   ++A  L +  A   GGGGG GRP MAQ+GG N
Sbjct: 803 AVVVLASV-NDDKVNILAGVTKDLISQGYHAGKLVKEVASRCGGGGG-GRPDMAQAGGKN 860

Query: 882 GNKADQAIAGVASFLK 897
             + ++A+A V  ++K
Sbjct: 861 PAQVEEALAFVQEYVK 876


>gi|319400948|gb|EFV89167.1| alanyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 876

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 513/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EA+++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSDYGNDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ +F IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTIAFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      ++++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSNQVIKGHDAFKLYDTYGFPIELTEELATQEKLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMSTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDDSQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+ A +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHAEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ +E + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQLQDEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I +V  ++  +   D K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNVKVLATEVEIPDPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVGQV-DGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|323490022|ref|ZP_08095243.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323396318|gb|EGA89143.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 874

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/916 (38%), Positives = 523/916 (57%), Gaps = 61/916 (6%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  +++FF++ GH+  PS+ L+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MKNLKAEDIRQMYIDFFKEKGHDQEPSAPLVPFEDPSLLWINSGVATLKKYFDGRVIPNN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKTEAIHWAWEFLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  +L +T++ EDEEA+ +W    G+ A++IIR+    NFW + E GP GP SEIF
Sbjct: 117 WIGFDADKLSVTIHPEDEEAYAIWLNEVGVPAERIIRL--EGNFWDIGE-GPSGPNSEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+EIWNLVF QF         +LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDISDPELYPGGENERYLEIWNLVFSQFNHNPDHTYTLLPKQNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA V Q+   NYD DLF  +I+ +E+++G KY  N    +  +VI DH+R+ +F I DG 
Sbjct: 234 MACVAQDVPTNYDTDLFIPIIKKTEEISGKKYGENAEMDMAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ +A+ LG  +P M  L+P +   M S YPE+   +  I   
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAKKLGVEQPFMYDLVPVVGDVMKSFYPEVNAKQDFIIRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E++RF +TL  GL +L  V+          + G+ AF+LYDT+G P+++ ++     
Sbjct: 354 MKLEEQRFHETLHDGLTILSSVIEKQKAAGQNEIPGEDAFRLYDTYGFPVELTEEYAEEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSK 467
           G+A +D   F  A++EQR RAR     + S  ++ ++  ++KE   A++FIGY       
Sbjct: 414 GMA-VDHKGFETAMQEQRDRARNARQNVNSMQSQSEVLGNIKE---ASEFIGYSQTVSD- 468

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V  I++ GE+V+ A  G++VEV+ DQTPFYAE+GGQ
Sbjct: 469 ----------------------ANVLFIIKDGELVDSAQEGEEVEVILDQTPFYAESGGQ 506

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D G    D ++  + +V+K   G  +H   V  G L T+ S+   +D   RR    NH
Sbjct: 507 IADRGTLSNDFVQASVLNVKKAPNGQNLHSVRVNTGEL-TKTSVQAQVDASERRHTVKNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG+HV+Q GS + PD LRFD +H   +T  EL++IE  VN+ +   +
Sbjct: 566 TATHLLHQALKDVLGTHVNQAGSYVGPDRLRFDFSHFGQVTKEELETIEQIVNEKVWDGI 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   N ++A   GA AL G KY D VRVV +     G +S  LCGG HV +T EI L
Sbjct: 626 AVQTGYYNLQEAKEMGAMALFGEKYGDVVRVVEI-----GGYSLELCGGVHVLNTSEIGL 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSE  I AGIRRIEA+TG+ A  +L   +  L++ A  LK S  ++V +V+ +  E 
Sbjct: 681 FKIVSEGGIGAGIRRIEAVTGKGAYENLKDSETILENAAGLLKSSPRDMVQKVQTVQAEM 740

Query: 768 RKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + LQ  +     +++         +  K+ D+  +S  +   D+ +L+ ++D L+ K+  
Sbjct: 741 KSLQRENESLLAKISNAQSAGILDAAQKVGDITVLSVKVEAKDNNQLRQLLDDLKSKMDK 800

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +I+L G +   K  +   VT+DL    ++A  + +  A+   GG GGGRP MA +G  +
Sbjct: 801 AVIVL-GATDGDKVMLAAGVTKDLAGGDYHAGQIVKHVAEQC-GGKGGGRPDMAMAGAKD 858

Query: 882 GNKADQAIAGVASFLK 897
            +K D+A+  V S +K
Sbjct: 859 ASKLDEALESVYSLVK 874


>gi|331002247|ref|ZP_08325766.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330411341|gb|EGG90757.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 885

 Score =  880 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/908 (37%), Positives = 518/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V+ IR  FL+FF++ GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + V
Sbjct: 10  KGVNRIRKKFLDFFEEKGHLSMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRV 69

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD
Sbjct: 70  CTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLD 125

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY +VY ED+EAF++W K  G+ A++I +    DNFW   E GPCGPCSE+++D+GE
Sbjct: 126 ANRLYPSVYLEDDEAFEIWNKEIGIPAERIFKFGKEDNFWEHGE-GPCGPCSEVYYDRGE 184

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+E+WN VF QF    K     L + +IDTGMGLER+A  LQ+
Sbjct: 185 KYGCGKPSCTVGCDCDRYMEVWNNVFSQFNSDGKGNYTELVQKNIDTGMGLERLAVALQD 244

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  K L+     +    Y+ +    ++ R+I DH+RS +F+I+DGI+P+NEGR
Sbjct: 245 VESIFEVDTIKSLLDRVAALAKTSYKEDAKKDISLRLITDHIRSCTFMISDGIMPSNEGR 304

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  +  +  L   +       YPEL + K +I + L  E+ +
Sbjct: 305 GYVLRRLLRRAARHGRMLGIKDTFLASLANTVIELSKDGYPELEEKKEMILKVLTEEENK 364

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L  +  +L K  +++++G+ AF+LYDT+G PLD+ ++I+  +G   +D 
Sbjct: 365 FDKTIDQGLSILSEIEENLTKSGEKVISGEDAFRLYDTYGFPLDLTKEIIEEKGFT-VDE 423

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+A+E QR++ARA          +   +   +    + F GYD L            
Sbjct: 424 AGFNKAMEAQRNQARAARKATNYMGADVTIYQSLDPKLTSVFEGYDSLLD---------- 473

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +  + A+  + EIVE    G    ++ D+T FYA  GGQ  D G   
Sbjct: 474 -------------TGKITALTTEDEIVEAIAEGDHGTIILDKTSFYATMGGQNADIGLIK 520

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D     + DV K +     H   V +G+ +   ++   +D  NR++ + NHSATHLLH 
Sbjct: 521 KDDAVFNVVDVIKLSGDKIGHVGFVTKGMFKLGDTVETVVDADNRKKTAANHSATHLLHK 580

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS +  D LRFD TH K +T  E+ ++E+ VN  I + LPVVT +MN
Sbjct: 581 ALREVLGNHVEQAGSYVAADRLRFDFTHFKSLTKEEIANVEEIVNAEINKALPVVTDVMN 640

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            EDA  SGA AL G KY   VRVVS+     G  S  LCGGTHV +T +I L  ++SE+ 
Sbjct: 641 VEDAKKSGAMALFGEKYRGDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKVLSENG 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG+         + +++ +A  LK  +  ++ + E + +E + L+  + 
Sbjct: 696 IAAGVRRIEALTGEGVIEFYQDIESRMQKMAELLKTGEAELITKAESLLDEMKTLKSENE 755

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K +L  E L     +   I  V F++  +S V+  EL+++ D L+  +  G+++L   
Sbjct: 756 KLKAKLASEALGDSAENIETINGVKFIAMQVSGVEMNELRNLGDKLKNDVDDGMVVLAS- 814

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K ++L +  ++ L    +A ++ +  A ++GGGGG GRP++AQ+GG N      A+
Sbjct: 815 DVDGKVNLLCMAGDNALKAGAHAGNIIKAIATLVGGGGG-GRPNIAQAGGKNPAGIKDAL 873

Query: 890 AGVASFLK 897
                  K
Sbjct: 874 DKAKEEFK 881


>gi|229587224|ref|YP_002845725.1| alanyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|228022274|gb|ACP53982.1| Alanyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 878

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 562/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTLNEAKC-------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ---------KIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I +H  I++RG +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIIHKCILKRGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|238916897|ref|YP_002930414.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|238872257|gb|ACR71967.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 880

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/908 (37%), Positives = 516/908 (56%), Gaps = 48/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +L+FF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRLYLDFFESKGHLKMKSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTETVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y +D+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYQDDDEAFNIWNKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  + L     ++ G+KY+ +    V+ RVI DH+RS +F+++DGI+P+NEGRGY
Sbjct: 241 SIFDVDTLQALRNKVCEMAGVKYKEDEKQDVSIRVITDHIRSVTFMVSDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + +  I + +  E+++F 
Sbjct: 301 VLRRLLRRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELEEKRTFITKVISEEEDKFN 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+ + + L    + +L+G  AFKLYDT+G P+D+ ++IL  + +  ID   
Sbjct: 361 KTIDQGLSILNDMEAELASKGENVLSGADAFKLYDTYGFPMDLTKEILEEKNIT-IDEAG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN A+EEQR +AR           +   +   +    + F+GYD L              
Sbjct: 420 FNAAMEEQRVKARNARKVTNYMGADATVYDEIDPAITSAFVGYDKLTN------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + E+V+    G K  V+ D+T FYA  GGQ GD G     
Sbjct: 468 -----------ESEITVLTTEEEVVDALSEGDKGTVIVDETVFYATMGGQEGDKGVIKTS 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +    K   G   H   + +G+++   +  + +    R     NHSATHLL  AL
Sbjct: 517 EGEFAVETTIKLKGGKIGHVGTMTKGMMKVGDTATMEVSPAYRADTCKNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + PD LRFD TH + +T  E+  +ED VN+ IA+ +PVVT +M  E
Sbjct: 577 RIVLGDHVEQKGSYVDPDRLRFDFTHFQSMTKEEIAKVEDIVNEKIAEAIPVVTDVMTIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVV++     G  S   CGGTHV++T  I L  IVSE+ + 
Sbjct: 637 EAKKTGAMALFGEKYGEKVRVVAM-----GDFSKEFCGGTHVANTANIRLFKIVSEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    ++ ++  A   K     +V ++  + +E + L   + K 
Sbjct: 692 AGVRRIEALTDKGVIKYYAELEKTIEEAAKAAKAEPVQLVKKIAAMNDEIKSLMSENEKL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L    L        ++  V +++  +  VD  EL+++ D L+ +I SG++++V    
Sbjct: 752 KAELANNALGDTAGDIKEVNGVKYIATKVDGVDMNELRNLGDKLKGEIGSGVVVIVSAQG 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K SV+ + T+D++ +  +A +L +  A ++GGGGG GRP+MAQ+GG N    D+ IA 
Sbjct: 812 ADKVSVIAMATDDVIAKGAHAGNLIKALAPIVGGGGG-GRPNMAQAGGKNPAGIDELIAK 870

Query: 892 VAS-FLKK 898
           V    L++
Sbjct: 871 VPDTILEQ 878


>gi|158320695|ref|YP_001513202.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|205829976|sp|A8MGI3|SYA_ALKOO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158140894|gb|ABW19206.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 880

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 520/905 (57%), Gaps = 48/905 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FLEFF+   H + PS+ L+P  D +L+  NSGM P K  F G E+P  + + T
Sbjct: 6   VNEIRKEFLEFFRSKEHIIHPSAPLVPQKDKSLLLINSGMAPLKPYFAGLEEPPGKRMAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RH TFFEMLGNFSFG YFK+ ++   W+ +TK  +L   
Sbjct: 66  CQKCIRTG----DIENVGRTARHATFFEMLGNFSFGDYFKKESLTWGWEFVTKNLELPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L+ TVY +D+EAF++W K  GL  ++I+R+   DNFW +   GPCGPCSEI+FD+GE  
Sbjct: 122 KLWATVYVDDDEAFEIWNKQIGLPEERIVRLGKADNFWEIGL-GPCGPCSEIYFDRGEDY 180

Query: 184 PGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        E +RY+E WN VF QF++  +     LP  +IDTGMGLERMA ++Q   
Sbjct: 181 GCGCEECKPGCECDRYVEFWNHVFTQFDRDEEGNYHPLPNPNIDTGMGLERMACIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +DID  + ++ +  ++T  +Y+ +    V+ R+I DH+RS S +I DGILP+NEGRGY
Sbjct: 241 SIFDIDTMQDILNSVCKITSSEYKKDERTDVSIRIITDHVRSISLMIGDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG     +  L+  +    G  Y EL+  K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGVNRAFLYELVDRVADNYGETYVELVDNKDYIKRVIKVEEERFM 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+G+ +L+  +  L   K+ +L+G  AFKLYDT+G P D+ ++IL  +GL+ +D   
Sbjct: 361 ETIDQGMDILNQYIEELVTLKETVLSGVNAFKLYDTYGFPFDLTKEILEEKGLS-LDETG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E+QR RAR   +G  +   ++  FS  +K   T F GY                 
Sbjct: 420 FESEMEKQRQRARDARIGADTEGWKEDIFSGLDKEIQTAFKGYTNFE------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                     V   V AIV    +VE+   G++  V+ D+T FY E GGQ+GD G    +
Sbjct: 467 ----------VEGKVLAIVSNDTVVEQCDKGKEATVILDETAFYGEGGGQVGDIGTLYNE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            +RL + D +K       H   VE G ++    +   +D   R   + NH+ATHLLH AL
Sbjct: 517 AVRLSVLDTKKGPHNQVHHVVRVEEGTIKIGDEVKAKVDMVTRMSTARNHTATHLLHKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+G HV Q GS +TPD LRFD TH + +T  ++  IE+ VN  I   L V T   + E
Sbjct: 577 RDIVGEHVHQAGSLVTPDRLRFDFTHFEGLTKDQITQIEEKVNQQILMALDVRTFETSIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA   GA AL G KY D VRVV V     G +S+ LCGGTHV+++GEI +  ++SE+ + 
Sbjct: 637 DAKKIGAQALFGEKYGDVVRVVKV-----GEYSTELCGGTHVTNSGEIGMFIMLSEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEAITG  A  ++    + ++ +A  LK    NVV RV ++  E ++      K 
Sbjct: 692 AGVRRIEAITGMEAYKYVQKNQKTIQEIADTLKTQVQNVVERVADLVHETKEKDREINKL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL              +  +N +  ++   +  +L+ + D L++KI SG+I+L G S 
Sbjct: 752 KSQLASNSTGDILDKATVVGGINVVVEVLENQEMDDLRKIGDVLKEKIGSGVIVL-GSSN 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + + + T+D + +  +A +L + +AK+ GGGGG GRP MAQ+GG N  K  +A+  
Sbjct: 811 QDKVNFVAMATKDAVSKGVHAGNLVKEAAKIAGGGGG-GRPDMAQAGGKNPQKIQEALDT 869

Query: 892 VASFL 896
           V   L
Sbjct: 870 VKEIL 874


>gi|326791257|ref|YP_004309078.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542021|gb|ADZ83880.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 881

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/903 (36%), Positives = 497/903 (55%), Gaps = 45/903 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ +R  +L+FF+   H    S  L+P ND +L+  N+GM P K  FTGQE+P  + +T
Sbjct: 5   SLNELREMYLKFFESKMHLRAKSFPLVPHNDNSLLLINAGMAPLKPYFTGQEEPPRRRMT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +TK  ++  
Sbjct: 65  TCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIEWAWEFVTKHLEIPV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ TVY +DEEA ++W+   GL  +K+I +   DNFW     GPCGPCSEI+FD+G  
Sbjct: 121 ERLFATVYQDDEEAAEIWRNKIGLPNEKVIYMGKEDNFWEAGIDGPCGPCSEIYFDRGPE 180

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                P  G   + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q  
Sbjct: 181 FGCDSPDCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAAMMQGV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           ++ +D+D  K +     Q+ G+ Y  N  N V+ RVI DH+RS +F+ ADG+LP+NEGRG
Sbjct: 241 SSIFDVDTIKAIRDHVCQLAGVTYGENYKNDVSIRVITDHIRSVTFMAADGVLPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RR++RRA+ +A+LLG     +  L+  +       Y EL      I + L  E++ F
Sbjct: 301 YVMRRLLRRAVRHAKLLGIEGLFLKDLVKTVVDNSKHEYTELEDKYEYITKLLTVEEKNF 360

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +T+DRGL +L   +  +      +L+G   F L DT+G P+D+  +IL  +GL   D  
Sbjct: 361 NETIDRGLNILKAHIDEMKAEGKTVLDGKACFTLSDTYGFPIDLTHEILEEQGLKA-DEE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   ++ QR +AR    G      ++  F+  +    T F+GYD L             
Sbjct: 420 GFKVEMDAQRQKARDARGGSKYMGADETIFNQMDSTMKTTFVGYDKLET----------- 468

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +  ++ +    E++E A  G  + VV  +TPFYAE+GGQ GDTG    
Sbjct: 469 ------------TGTLEVLANDEELLEAAGCGDSIYVVISETPFYAESGGQAGDTGLITT 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +  ++D  K   G F HHA V  G +    S   T++  +R   S NHSATHLL  A
Sbjct: 517 ATGKAVVSDTTKVIGGKFAHHAQVVEGSIEKGQSATFTVENVSRMDTSRNHSATHLLQKA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++G H+ Q GS +  D LRFD TH + +T  +L+ +E  VN+ I + L +  + M  
Sbjct: 577 LREVVGGHIEQAGSNVNKDRLRFDFTHFEALTHEQLEKVEALVNEKILEGLTITIKEMPI 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A   GA AL G KY   VRVV++     G +S  LCGGTH+ +T  I    I+SE+ +
Sbjct: 637 DEARKLGAMALFGEKYGQTVRVVNM-----GDYSVELCGGTHLQNTAAIGTFKIISETGV 691

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG+ A       +  L  +++ +K  +  VV +VE +  E + L+  + K
Sbjct: 692 AAGVRRIEAVTGRGALHFYQTMENSLNEVSALVKAKKTEVVKKVESMTIELKNLEKENEK 751

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K ++              I  +  +   I E+D  +LK++ D+L+ ++Q G+++L+   
Sbjct: 752 LKAEIAASKAGALTEQAKTINGIKVLVSQIDELDMNDLKNMGDSLKDQLQDGVVLLMSHV 811

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            +K   V +     +    +   +    A V+GG GG GRP+MAQ+GG + +K  +AI  
Sbjct: 812 ADKVNLVAMATPSAVEKGVHCGQIISAVAGVVGGKGG-GRPNMAQAGGKDASKIKEAITV 870

Query: 892 VAS 894
             +
Sbjct: 871 AET 873


>gi|320161086|ref|YP_004174310.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319994939|dbj|BAJ63710.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 911

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/925 (37%), Positives = 518/925 (56%), Gaps = 57/925 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR TF++FF + GH  +PSSSL+P  D TL+FTN+GMV FK++F G +   Y      Q
Sbjct: 8   EIRQTFIDFFVQRGHTFVPSSSLVPGGDQTLLFTNAGMVQFKDVFLGTDHRPYSRAVNSQ 67

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R  GKHNDLD+VGR + HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + LD  RL
Sbjct: 68  KCMRVAGKHNDLDDVGRDDTHHTFFEMLGNWSFGDYYKKEAIAWAWELLTQVYQLDPARL 127

Query: 126 YITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           Y T + +       DEEA ++W+     + + ++     DNFW MA+TGPCGPCSEI  D
Sbjct: 128 YATCFKDEKGDIPTDEEAAEVWRSQPNFNPEHVLFFGRKDNFWEMADTGPCGPCSEIHID 187

Query: 179 QGEC------IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +G        +PG +   + + +R++EIWNLVF+Q+ + +  E   LP+  +DTGMG ER
Sbjct: 188 RGPEACDKKGVPGHVCRVNGDCKRFLEIWNLVFIQYNRLSPTELEPLPQRHVDTGMGFER 247

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           + ++LQ  ++NY  DL   L+Q ++++TG        NI  +RVI DH R+++FLIADG+
Sbjct: 248 LVSLLQGVSSNYRTDLLWPLLQKTQELTGHTDAEREANITPYRVIADHARAATFLIADGV 307

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P N GR YV R I+RRA  +   +G  EP +  +   +    G  YPEL++ +  I + 
Sbjct: 308 VPGNTGRNYVCRMIIRRAARFGGKIGLKEPFLAKVAEVVIQNYGDFYPELVRNRTAILDG 367

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+ERF +TL+ G+  L   L  L     +IL+G  AF LY THGLPL++ +DI   +
Sbjct: 368 ITREEERFQRTLESGMKELQESLDGLKGKGEKILDGKKAFDLYATHGLPLELTRDIAQEQ 427

Query: 409 GLAGIDIISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+EE R  + A  + G   G    ++    E   A   +G   +  + 
Sbjct: 428 GL-DVDQQGFRDAMEEHRLASGAGKAFGPLGGEDVDLYRPALESLQAEGKLGKAGVEYNP 486

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           +                   V   + A+ ++G+ V    +G +VEV+  +T FY EAGGQ
Sbjct: 487 YE---------------WLEVEGELLALFREGQRVSSVSAGDQVEVLLPRTGFYVEAGGQ 531

Query: 528 LGDTGCAIGDGI---RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +        +++T+++K A G+ VH   V RG       ++  +D Q RR + 
Sbjct: 532 VSDAGTIVSVNEPRWEIRVTEMRKPAAGVIVHVGEVVRGTPTVGDWVIARVDTQRRRDIM 591

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH  L  +LG H  Q GS + PD LRFD TH +P+T  +L+ IE  VN  I 
Sbjct: 592 RNHTATHLLHAELQEVLGEHARQAGSLVAPDRLRFDFTHPEPLTPEQLERIEAGVNRAIL 651

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N+P+ TR+   ++AIA GA AL G KY + VR V +   D   +   LCGGTHV  TG+
Sbjct: 652 ENIPLQTRVKPLQEAIAEGAMALFGEKYGEVVRTVMIGETDPLSY--ELCGGTHVHETGD 709

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  IVSE S  AG+RRIEA+TG+ A   +  +   ++  A  L  S   V  RVE + 
Sbjct: 710 IGLFLIVSEGSAAAGVRRIEAVTGRGAYELVQKRFRNMRKTAEMLSASMDEVPERVENLL 769

Query: 765 EEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E   L+   A  +     L  + +      I DV  ++ +I  VD+  L+S+ D  +++
Sbjct: 770 DEMSILRKAVASLRQQVASLAFDQDLEKVTFIEDVAVLTSLIQGVDADTLRSLADRFRQR 829

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-----LSAKVLGGGGGGGRPH 873
             +G+++L  +  + K  ++  VT+DL+ R F+A DL +     +     G      RP 
Sbjct: 830 YSTGVVVLASVV-DGKPVIIGAVTDDLVKRNFHAGDLVKRVAAVVGGGGGG------RPT 882

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           +AQ+GG + ++  +A+     ++K+
Sbjct: 883 LAQAGGRDVSRLSEALDQTYGYVKE 907


>gi|169831075|ref|YP_001717057.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
 gi|205830046|sp|B1I370|SYA_DESAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169637919|gb|ACA59425.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C]
          Length = 880

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/908 (39%), Positives = 545/908 (60%), Gaps = 50/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N S IR  +LEFF   GH ++PS+SLIP NDPTL++T++GMVPFK  FTG   P ++ V
Sbjct: 1   MNSSEIRKRYLEFFAARGHRVIPSASLIPGNDPTLLWTSAGMVPFKPYFTGVATPEFRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++ VGRT RHHTFFEMLGNFSFG YFKERAI  AW+ +T++  L 
Sbjct: 61  VTCQKCLRT----PDIEMVGRTARHHTFFEMLGNFSFGDYFKERAIPWAWEFVTRDLGLA 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+I+VY +D EAF  W+ + G+ A++I+R+  + NFW +   GPCGPCSE+++D+G 
Sbjct: 117 PEHLWISVYLDDNEAFDHWRGL-GVPAERIVRLGRDTNFWEIGV-GPCGPCSEVYYDRGP 174

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                    G   + +R++EIWNLVF+Q+ +    +   L    IDTGMGLER+A+VLQ 
Sbjct: 175 AYGCESASCGPGCDCDRWLEIWNLVFIQYFRNEAGDYSPLESPGIDTGMGLERVASVLQG 234

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DLF+ LI  +  V G++Y  +       +VI DH R+ +F IADG+LP+NEGR
Sbjct: 235 VNTNFDTDLFRGLIDYTAGVLGVRYGDDPAGDAALKVIADHGRAITFAIADGVLPSNEGR 294

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+  A LLG  +P +  +  A+  +M  AYPEL  A+  + + +R E+ER
Sbjct: 295 GYVIRRLLRRAVRKALLLGREKPFLEGVALAVIEQMAGAYPELETARDSVRKVVRFEEER 354

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL +G  ++  +++     K   L G  AF+LYDT+G PL++ ++I   +GLA +D 
Sbjct: 355 FRQTLTQGNEIIGRLIAEARAEKRSTLEGAAAFQLYDTYGFPLELTREICAEQGLA-VDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F  AL+ Q+ +AR+           E  + +L+++ G T+F+GY+ L           
Sbjct: 414 AGFEAALKAQQQKARSSRRETRYVEERETFFRNLRDEIGLTRFVGYEQLEAD-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V+A+++ G+ V  A SG++V +V D TP YAE+GGQ+GD G  
Sbjct: 466 ---------------AGVRALIRDGQRVPAAGSGEQVSLVVDTTPCYAESGGQVGDHGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G+ +R +ITD     EG+ VH  +VE G+L     + + +D   RR++  NH+ATHLLH
Sbjct: 511 EGENVRGRITDTFAPVEGLHVHEVVVEAGVLEEGARIRILVDGSRRRKICRNHTATHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  +LG+HV+Q GS + P+ LRFD TH +P++ AEL  +E  +N+I+  NL V +   
Sbjct: 571 RTLKAVLGTHVNQAGSLVAPERLRFDFTHIQPLSEAELAEVESRINEIVLSNLRVESFQT 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A   GA AL G KY D VRVV ++       S  LCGGTHV ST EI  + I +ES
Sbjct: 631 SFDRARELGAVALFGEKYGDLVRVVQIDG-----VSMELCGGTHVLSTAEIGPVKITAES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ AG+RR+EA+TG  A + L  ++E+L  +A  ++V    +V  VE + +  +KLQ  +
Sbjct: 686 SVGAGLRRLEAVTGMEALAFLNSRNEQLHRIAQAVRVPVSELVVHVERLLDHQKKLQREN 745

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            + + +L V ++            V  ++  +   D  EL+S++D L++++ S +I+L G
Sbjct: 746 EQLQDRLQVYEVKELLDRASTHEGVRILATSVRARDMAELRSMLDLLRERLGSAVIVL-G 804

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +   K S++  V+ DL+ R  +A  + + +A V GGGGG GRP MAQ+GG N  K  +A
Sbjct: 805 SAVNGKVSLVASVSRDLVARGLHAGAIIKEAAAVAGGGGG-GRPEMAQAGGKNPEKLTEA 863

Query: 889 IAGVASFL 896
           +      +
Sbjct: 864 LEKARQVV 871


>gi|27468219|ref|NP_764856.1| alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57867101|ref|YP_188758.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811025|ref|ZP_04825498.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875956|ref|ZP_06284823.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|33301694|sp|Q8CSA7|SYA_STAES RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71153555|sp|Q5HNT2|SYA_STAEQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27315765|gb|AAO04900.1|AE016748_134 alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228]
 gi|57637759|gb|AAW54547.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805443|gb|EES58100.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294981|gb|EFA87508.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 876

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 512/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+   +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I ++  ++  +   + K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVGQV-DGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|71083347|ref|YP_266066.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|83305853|sp|Q4FMX6|SYA_PELUB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71062460|gb|AAZ21463.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 889

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/912 (44%), Positives = 583/912 (63%), Gaps = 44/912 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKNIFTG EK  Y   
Sbjct: 4   KTLNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNIFTGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +D
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGID 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY  DEEAF  WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVYHNDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLEGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D FK LI ++     +K   +N  + RVI DHLR+SSFL+A+G+LP+NEGRGYV
Sbjct: 244 HDNYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  +P+  ++   L  EM + YPEL +A+ LI+ETL++E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  L  + K  IL G+VAFKLYDT G PLD+ +DIL  + +  +D   F+ 
Sbjct: 364 LLDRGIKILNEELEKVEK--ILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDL 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++E +  A+ +  G G  + ++IWF +K++ GAT F+GY                    
Sbjct: 421 LMKESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGYST------------------ 462

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                +    +V  I++  + V++     +  ++ +QTPFY E+GGQ+ DTG    +   
Sbjct: 463 -----DKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEAFE 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +++DVQKK   +FVH+  V+RG ++ + ++ L ID Q R  +   HSATHLLH AL  +
Sbjct: 518 FEVSDVQKKLGDLFVHYGKVKRGSVKLKDNVELKIDTQRRNNIRAYHSATHLLHEALRRV 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D LRFD +H KPI+  E++ IE  VN II +   V TRIM  ++A+
Sbjct: 578 LGEHVTQKGSLVQSDRLRFDFSHMKPISDEEIRKIEHYVNSIIEKKSEVKTRIMTPKEAV 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+S+  E+G   S+ LCGGTHV +T +I    I+S+SSI AG+
Sbjct: 638 ENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGV 697

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEE---YRK 769
           RR+EA+   +    L  ++ +        +     +  ++ ++         ++    + 
Sbjct: 698 RRVEALRDAQLIDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKD 757

Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD--VNFMSHI---ISEVDSKELKSVMDALQKKIQSGI 824
           L     +  +   ++D   +KI D  +N        I ++  K+L+ ++D  +K+I  G+
Sbjct: 758 LNRQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIIDLPFKDLRKLIDEGKKEIGEGL 817

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++  I  + K  + + VT+ L  +F+AV + R  ++V+GG GGGGR   AQ+GG   +K
Sbjct: 818 VVIYAI-NDNKVGLAVGVTKTLEKKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTLPDK 876

Query: 885 ADQAIAGVASFL 896
            +++   +   +
Sbjct: 877 IEESFENIKKLI 888


>gi|15893250|ref|NP_360964.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|20532256|sp|Q92G00|SYA_RICCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15620469|gb|AAL03865.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
          Length = 878

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/901 (45%), Positives = 563/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q++RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKARARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTLNEAKC-------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ---------KIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I +H  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQSAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|34581082|ref|ZP_00142562.1| alanyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28262467|gb|EAA25971.1| alanyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 878

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/901 (45%), Positives = 563/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHIHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WK+I+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKQIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T+++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTLNEAKC-------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ---------KIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I +H  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|293366424|ref|ZP_06613102.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319458|gb|EFE59826.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735187|gb|EGG71479.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU045]
          Length = 876

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 511/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLNFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+   +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L  IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I ++  ++  +   + K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGNIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVGQV-DGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|319651658|ref|ZP_08005785.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396725|gb|EFV77436.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 877

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/911 (38%), Positives = 530/911 (58%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    +T
Sbjct: 5   SGAEIRRMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT       
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIIWAWEFLTDKNWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +L +T++ ED+EAFK+W++  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 EDEKLSVTIHPEDDEAFKIWREKVGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E +RY+E+WNLVF +F          LPK +IDTGMGLERMA+V
Sbjct: 178 PEYGNDPEDPELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMASV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLF  +I+ +E+++G KY       V  +VI DH+R+ +F + DG LP+N
Sbjct: 238 VQNVPTNFDTDLFMPIIRGTEEISGKKYGASKETDVAFKVIADHIRTVAFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ +   EP M  L+P +   M   YPE+ +    I++ +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKQININEPFMYDLVPVVGEIMHDFYPEVKEKTEFIQKVIKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L  V+    +     + G   F+LYDT+G P+++ ++     G+  
Sbjct: 358 EERFHETLHEGLAILSSVIKKEKEKGSVTIQGADVFRLYDTYGFPVELTEEYAEEEGMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + +E QR RAR+    + S   +     L E    ++F+GYD L+ +      
Sbjct: 417 VDHAGFEKEMEGQRERARSARQDVDSMQVQG--GVLGELKIESEFVGYDKLQTA------ 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V AIV+ G++++EA +G++V+++ ++TPFYAE+GGQ+ D G
Sbjct: 469 -----------------AKVAAIVKDGQLIDEAHAGEEVQLILNETPFYAESGGQIADQG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G+++ I DVQK   G  +H A++E G L+ E S++ ++D Q R ++  NH+ATHL
Sbjct: 512 TLKAEGLKVSIKDVQKAPNGQNLHRAVIEEGTLKAEASVLASVDEQIRSKVIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LGSHV+Q GS + PD LRFD +H   ITS EL+ IE  VN+ I  +L V   
Sbjct: 572 LHQALKDVLGSHVNQAGSLVGPDRLRFDFSHFGQITSEELEKIEAIVNEQIWVSLDVDIN 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + ++A A GA AL G KY   VRVV V     G +S  LCGG HV +T  I L  I S
Sbjct: 632 FKDIDEAKAMGAMALFGEKYGKIVRVVQV-----GDYSLELCGGCHVPNTSSIGLFKIQS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   L  Q   LK  +  LK +  ++  R++ +  E ++LQ 
Sbjct: 687 ESGIGAGTRRIEAVTGEAAYKLLNDQIHVLKEASGKLKTNPKDLSSRIDVLLGEMKQLQR 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +         +I  +  ++  +   D   L+++ D L++K+ S +++L
Sbjct: 747 ENESLAAKLGNIEAGSLVSKAKEINGITVLAEKVQASDMNNLRNMADDLKQKLGSAVVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G   E K +++  VT+DL+ + F+A    +  A   GGGGG GRP MAQ+GG +  K +
Sbjct: 807 -GSVNEGKVNIIAGVTDDLIKKGFHAGKAVKEVAAKCGGGGG-GRPDMAQAGGKDPEKLE 864

Query: 887 QAIAGVASFLK 897
            A+  V  ++K
Sbjct: 865 SALQFVEEWVK 875


>gi|163781728|ref|ZP_02176728.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882948|gb|EDP76452.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 873

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/903 (39%), Positives = 526/903 (58%), Gaps = 48/903 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF++ GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y    
Sbjct: 4   SAHEIRELFLSFFERKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGVEKRPYTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFKE AI+ AW+ +T    L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKESAIEYAWEFVTGTLKLPE 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I ++   DNFW M ETGPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYRDDEEAYRIWSEKVGVPSERIWKLGDEDNFWQMGETGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +  K     LPK +IDTGMGLER+A+VLQ    
Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERVASVLQNTKT 235

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           NY+ID+   LI+  E V+G +Y    +  V  RVI DHLR+  F I+DG+LP+NEGRGYV
Sbjct: 236 NYEIDIIYPLIEFGEGVSGHRYGESPDTDVALRVIADHLRALIFAISDGVLPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRA+ +   LG  EP +   +  +   M   YPEL  ++  ++  +R E+ERF +
Sbjct: 296 IRRILRRALRFGYKLGVEEPFLNRGIDLVVDIMKDPYPELDMSREFVKGVVRGEEERFIR 355

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  ++ ++    ++  + L G+  FK YDT+G PLD++ +I   RGL  IDI  F
Sbjct: 356 TLKAGMQAVEELIERAKEEGRDTLKGEEVFKAYDTYGFPLDLIDEIARERGLK-IDIAGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            + +E+QR RAR H   + +   + ++  LK+    ++F+GY+                 
Sbjct: 415 QEEMEKQRERARKH-FKVETKKVKPVYQHLKDIGKTSEFVGYEHYEY------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + +  +V+  E+V E   G++ E++  +TPFY E GGQ+GDTG    D 
Sbjct: 461 ----------ETELMGVVKGEELVSELSEGEEAELILRETPFYPERGGQVGDTGVIESDR 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D Q   +G+ VH   + +G LR    +V  +D + R  +  NH+ATHLLH AL 
Sbjct: 511 ALFKVEDTQSPVDGVIVHRGKLLKGTLRVGDRVVARVDRERREDIMRNHTATHLLHAALK 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD TH + +T  ELKSIE+ VN+ I +N+PV    M+ + 
Sbjct: 571 NLLGEHVRQAGSLVADRYLRFDFTHFEALTREELKSIEELVNEKIRENMPVQVNEMDYQS 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ SGA A+   KY D VRV+S      G  S  LCGGTHVS TG+I    I+SESS+ A
Sbjct: 631 ALRSGAVAIFEEKYGDTVRVIS-----AGEFSRELCGGTHVSRTGDIGYFKILSESSVGA 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RR+ A TG+ A      +   L+ +A  L   +  V+ R+E +  E ++ +   ++ +
Sbjct: 686 GVRRLIAQTGRWAVETAFREHTLLEDVAQSLNAKEEEVLSRLESLKSELKEKEREISRLR 745

Query: 779 LQLNV----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            +L        +   ++ +          V ++EL+++ D L+ K    ++ L+   K+ 
Sbjct: 746 QELLKFQIETSVKREEVGEFTLFWGKFKGVGAEELRNLADMLRHKTGKDVVFLLS-EKDG 804

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S ++ V+++  DR  A  L +   + L GGGG GR  +AQ GG N    ++A+  + +
Sbjct: 805 KLSTVVAVSKETTDRVKANQLIKELGRALKGGGG-GREDLAQGGGSNPGGFEEAVKILRN 863

Query: 895 FLK 897
            LK
Sbjct: 864 RLK 866


>gi|237736819|ref|ZP_04567300.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420681|gb|EEO35728.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 866

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/909 (38%), Positives = 526/909 (57%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+K  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNQIRKEFIEFFKKKNHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QK +R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKSIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++V+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVSVFTTDDEAEKIWIEKCNFPKERIVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+  ++
Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERVTAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  KY  +     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNTKYGEDKEKDFSLKVITDHSRAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG +E  +  ++  +   M  AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQSELFLYKMVDKVVEMMNEAYPDLNDNLEHIKKVVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F +TLD+G+ L++  +  +  +  + L+GD+ F+LYDT+G P ++ ++I   +G+  +
Sbjct: 356 EKFSRTLDQGIQLVNQEIEKVKSEGGKKLSGDITFRLYDTYGFPYELTEEICEEKGVE-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +ARA    +     +       +KYGAT F+GY+ L      KE  
Sbjct: 415 SREEFEAKMEEQKEKARAAREVVMEKGQDSFIEEFYDKYGATNFVGYETL------KETA 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K+L  +   D                          K  ++FD TPFY E+GGQ  D G 
Sbjct: 469 KLLSIREGKDG-------------------------KTLMIFDTTPFYGESGGQTADIGV 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G   ++ DVQK+ +GIF H   + +G  +     +L +D  NR   + NH+ATHLL
Sbjct: 504 ISGNGFEGKVVDVQKQ-KGIFTHTVEIVKGEAKEGEEYLLEVDEMNRLATAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +    LRFD  H + +TS E++ +E+ VN+ IA++L V  R 
Sbjct: 563 HKALREVLGTHVQQAGSLVNGQRLRFDFNHYEAMTSEEIEKVENLVNEKIAESLCVTVRN 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A   GA AL G KY D V             S  LCGGTH+ +  +I L  I SE
Sbjct: 623 MSMDEAKKEGAMALFGDKYGDVV-----RVVKVDDFSIELCGGTHIDNIAKIGLFKIESE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQ 771
           S I AG+RRIEA+TG  A   +   +  LK +A  +K  + NVV RVE++ E  R+   +
Sbjct: 678 SGIAAGVRRIEAVTGLGAYELVKKMERTLKEIAKTVKSDEANVVERVEKMTETLRENSKE 737

Query: 772 LIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +   K K+   +    + +  +I  V  +     +  ++EL+ ++D+L+ K+ S +++L 
Sbjct: 738 IETLKAKITNYEAGSLNAAAEEINGVKVVIKTFKDKTAEELRQMVDSLKDKLGSCVVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S E KA   + VT+DL+ +  A +L + +A+ + GG GGGRP  AQ+GG + +K ++A
Sbjct: 798 --SGEDKAVFAVGVTKDLIGKVKAGNLVKEAAQ-IAGGNGGGRPDFAQAGGKDASKIEEA 854

Query: 889 IAGVASFLK 897
           +A V   LK
Sbjct: 855 VAKVRETLK 863


>gi|282850479|ref|ZP_06259858.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579972|gb|EFB85376.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 871

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 500/906 (55%), Gaps = 55/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGCKT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+KY  + N  V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L  ++  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKAAVIPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQR RAR   +                               +K    D   L  
Sbjct: 416 EAAMKEQRERAREARVK----------------------------EDAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVGPM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +++I + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEIHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ ++
Sbjct: 568 KVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I +
Sbjct: 628 AKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E +       + +
Sbjct: 683 GVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLTEAKDTAKELEQIR 742

Query: 779 LQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISK 832
            +L+    +        + DV F+   +      EL+ + D    K+  SG++++  I  
Sbjct: 743 KELSAAGAADIIAGKVVVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGAIMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A+  
Sbjct: 803 DDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEALKA 861

Query: 892 VASFLK 897
               LK
Sbjct: 862 GGEALK 867


>gi|302327820|gb|ADL27021.1| alanine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 882

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 513/911 (56%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F++FF+  GH  + SS ++P +DPTLMFTN+GM  FK IF G     ++  
Sbjct: 5   MTSAQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L 
Sbjct: 65  CNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + RL+ TVY +D+EA+++WK +SGL  D+I+R   + NFW M +TGPCGPCSEI +D+G 
Sbjct: 125 KERLFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGD 184

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E     + G + E +RYIEIWN VFMQ+E+ +      L   ++DTGMG ER+  
Sbjct: 185 LATQAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDTGMGFERICA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +LQ KT+NYD D+F  +I    +++G+ Y +G     HRVI DH+R+ SF IADG LP+N
Sbjct: 245 ILQGKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +ARLLG  +P +  L+  L   MG A+PE+ + K  +   ++SE
Sbjct: 305 EGRGYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F +TLD GL     + + L K + + GD  F LYDT+G P D+   +   +GL  ID
Sbjct: 365 EESFIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGL-LID 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              + + + EQ+ RARA+     +    + W   +    +T F+GY+L            
Sbjct: 424 EEGYEKCMNEQKERARANMKQGINTMGTEGWT--QYSEASTNFVGYELSA---------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                  + ++V        + +V + +PFYAE GGQ+GD G  
Sbjct: 472 ----------------------CETKVVRWREDKGVLSIVLETSPFYAEMGGQVGDKGTL 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRT---EMSLVLTIDYQNRRQLSINHSATH 591
           +   + +Q+ D  K      +    V +G           + T+D   R  +  NHSATH
Sbjct: 510 VSADLEIQVFDTVK-VNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS ++ + LRFD +H   +T+ E++ +ED VN  I + LPV T
Sbjct: 569 LLQAALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ ++A ASGA AL G KY D+VRVV +  + G   S  LCGG HV +TG I ++ IV
Sbjct: 629 DVMDVDEAKASGAMALFGEKYGDKVRVVKMG-DAGVEFSRELCGGLHVQNTGNIGMVKIV 687

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS+ AG+RRIEA++G+ A S L    + L +L   L+     V+ R+++ + + + L+
Sbjct: 688 SESSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLE 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIML 827
                 KL+L     +      +N M   +      +  ++ K+++D +Q K+    + +
Sbjct: 748 KSLQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEKYKNLLDGVQNKLDVDSVAV 807

Query: 828 VGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +        S+ ++V +++      A D+ R  AK    G GGGRP  AQ+G     K  
Sbjct: 808 IANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKACN-GKGGGRPDRAQAGTREPEKIA 866

Query: 887 QAIAGVASFLK 897
           +AIA   ++++
Sbjct: 867 EAIANANNWIR 877


>gi|302386453|ref|YP_003822275.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197081|gb|ADL04652.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 879

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/912 (38%), Positives = 514/912 (56%), Gaps = 50/912 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTGQE P  
Sbjct: 1   MKNYGVNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPR 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  +W+ LT   
Sbjct: 61  RRVTTCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTGVI 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY ED+EAF++W K  G++ ++I R    DNFW     GPCGPCSEI++D
Sbjct: 117 GLDPDRLYPSVYLEDDEAFEIWNKKIGIAPERIFRFGKADNFWEHGA-GPCGPCSEIYYD 175

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P  +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 176 RGEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +D+D  K L+     +   +Y+ N  V+   R+I DH+RS +F+I+DGI+P+N
Sbjct: 236 VQDVDSIFDVDTIKALLNRVAALARTEYKKNADVDVSLRLITDHVRSCTFMISDGIMPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  L   +       YPEL + K +I + L  E
Sbjct: 296 EGRGYVLRRLLRRAARHGRLLGIEGKFLADLSTTVIELSKDGYPELEEKKAMILKVLTQE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F KT+D+GL +L  +   +    + IL+G+ AFKLYDT+G PLD+  +IL  +   G
Sbjct: 356 EDKFNKTIDQGLAILGELEEEMVKKGETILSGENAFKLYDTYGFPLDLTLEILEEKNF-G 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+++QR  AR           +   +   +    T+FIGYD L         
Sbjct: 415 VDEEGFKAAMQKQRETARNARKTTNYMGADVTVYQSIDPAITTEFIGYDKL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +    ++VE    G+   +V +QT FY   GGQ GD G
Sbjct: 466 --------------ICDSKILVLTTDTDLVEALTDGETGTIVTEQTVFYGTMGGQQGDVG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + D    ++ +      G   H   + +G+L++   + L +   NR+    NHSATHL
Sbjct: 512 YIVSDRGEFKVEETIHLQGGKVGHVGKMAKGMLQSGDVVTLKVCEGNRQNTGKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL T+LGSHV Q GS +  D LRFD TH   +T  E++ +E  VN+ I ++LPV T 
Sbjct: 572 LQKALRTVLGSHVEQAGSFVDGDKLRFDFTHFSAMTPEEIRQVETLVNEKIKESLPVKTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM  EDA  SGA AL G KY D VRVV +     G  S+ LCGGTH+++TG I    I+S
Sbjct: 632 IMTLEDAKKSGAMALFGEKYGDTVRVVKM-----GDFSTELCGGTHINNTGVIGSFKILS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG+RRIEA+TG     +    +++L   A   K     +  ++E + +E + L  
Sbjct: 687 ETGIAAGVRRIEALTGDGLMHYYQETEKELHEAAKAAKTMPSALTSKIESLLDEIKALHS 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            + K K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G+I++
Sbjct: 747 ENEKLKSRLAKDSLGNVMDQVKEVKGVKILATKVMDVDMNGLRNLGDQLKEKLGEGVIVI 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             I ++ K +++  VT++   +  +A +L +  A ++GGGGG GRP+MAQ+GG N +  +
Sbjct: 807 ASI-QDDKVNLMAAVTDEAQKKGAHAGNLIKAIASLVGGGGG-GRPNMAQAGGKNPSGVE 864

Query: 887 QAIAGVASFLKK 898
             +  V   + +
Sbjct: 865 ACLEKVTEVVAE 876


>gi|126641224|ref|YP_001084208.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 837

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/872 (43%), Positives = 504/872 (57%), Gaps = 52/872 (5%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK+ F G EK  Y   TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDCFLGLEKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157
           K  A++ AW+ LT  +   L + +LY+TVY  D+EA+ +W K  GL+ ++IIRI  N   
Sbjct: 61  KRDALKFAWEFLTSEQWLALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGE 120

Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQN 212
               DNFW+M +TGPCGPCSEIFFD GE I GGLPGS E +G+R+IEIWN VFMQF +  
Sbjct: 121 KYASDNFWAMGDTGPCGPCSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTA 180

Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
                 LP  S+DTGMGLER++ VLQ   +NYDIDLF+HL++A+  + G++ EG    + 
Sbjct: 181 DGVLHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQ--PSL 238

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332
           RV+ DH RS  FLIADG+ P+NEGRGYVLRRI+RRA+ +   LG T      +L  L   
Sbjct: 239 RVVADHARSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEV 298

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MG AYPEL   + +IE TL  E+E+F KTL++GL LL+G L+ L KD+ + G   FKLYD
Sbjct: 299 MGQAYPELEARREVIEATLIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYD 357

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P D+  DI   RG   ID   F   +  QR RAR       +G     + ++ +  
Sbjct: 358 TYGFPTDLTADIARERGFI-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVE 410

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
           G TQF GY    G                          + AI + G  V+E   G +  
Sbjct: 411 GETQFDGYTNTTG-----------------------QGQIVAIYKDGVQVDEVSEGDEAL 447

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V +QTPFYAE+GGQ+GDTG    +    ++ D  KK+ G FVH  IV  G L+T  ++ 
Sbjct: 448 IVLNQTPFYAESGGQIGDTGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVE 506

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +    R   + NHSATHLLH AL  ILGSHV Q GS +  D LRFD  + +P++  +L
Sbjct: 507 AIVKADIREATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQL 566

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSS 691
           + +E  VN  I  N  V T +++ E A A GA  L G KY D VRV+S+    D    S 
Sbjct: 567 QQVERLVNAEIIANTAVTTELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSI 626

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGG HV  TG+I L  I SE  + AG+RRIEA+TG +A   +   D  ++ + S LK 
Sbjct: 627 ELCGGIHVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKA 686

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDS 806
            +   V RV+   E    LQ    +   +L      DL      IA    +   +  VD+
Sbjct: 687 QKDQTVERVQANVELVSALQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDA 746

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           K L+++ D+++ K+++ +I+L G+  + K S+L  V         A D+ +  A  L GG
Sbjct: 747 KALRNLHDSVKSKLENAVIVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GG 804

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGG+P +AQ G P   K  Q +A + ++L++
Sbjct: 805 KGGGKPDLAQGGAPLNEKFGQVMAALPAWLEQ 836


>gi|291542143|emb|CBL15253.1| alanyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 877

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/905 (35%), Positives = 497/905 (54%), Gaps = 50/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  FLEFF+  G   LPS SL+P +D +L+  NSGM P K  FTG+  P  + V
Sbjct: 4   TGLNELREKFLEFFESKGCLRLPSFSLVPKDDNSLLLINSGMAPMKKYFTGEVTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++ VG T RH TFFEMLGNFSFG YFK  A   AW+  TK  ++ 
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFGDYFKHEATAWAWEFFTKVLEMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+++Y++D+EAF +W K  G+    ++R+   DNFW     GPCGPCSEI+FD+G+
Sbjct: 120 PEKLYVSIYEDDDEAFDIWTKEVGVDPSHMVRLGKEDNFWEHGS-GPCGPCSEIYFDRGD 178

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +R++E+WNLVF QFE   K     L   +IDTGMGLER+A V+Q 
Sbjct: 179 EKGCGRPDCHVGCECDRFVEVWNLVFTQFESDGKGNYTPLEHPNIDTGMGLERLACVMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N + +D  +++++   Q+TGM+Y  N    V+ RVI DH+RS++F+I DG+LP+NEG+
Sbjct: 239 VDNLFLVDTIQNIMKHISQITGMEYGKNEKSDVSLRVITDHIRSTTFMIGDGVLPSNEGK 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLGY EP +  +   +  E  +AYPEL + +  I + ++ E+E 
Sbjct: 299 GYVLRRLLRRAARHGRLLGYNEPFLYKVCDTVIKENLTAYPELKEKQEFITKVIKVEEES 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KT+D+G  +L+G++      ++L+G+ AFKL DT+G P+D+ ++IL  +G+  +D+  
Sbjct: 359 FAKTIDQGFKMLNGIMDS-EDVKVLSGEDAFKLNDTYGFPIDLTREILSEKGIK-VDVER 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++EQ+ R+R      G+         L +    T+F+GY  L+             
Sbjct: 417 FRELMKEQKKRSRDARKNAGADAWISDATDLSD-VANTEFVGYTDLKS------------ 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S V AIV+ G  V+    G+   +V D+TPFY E GGQ+GDTG     
Sbjct: 464 -----------TSKVLAIVKDGVRVDSIGEGENAIIVLDKTPFYGEGGGQVGDTGVMESG 512

Query: 538 GIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                + +  K   G I++H   V+ G +     +   +D + R  ++ NH+A HLL  A
Sbjct: 513 SFSADVDNTTKNPSGTIYLHACTVKSGSINVGAEVSTAVDEERRADITRNHTAAHLLQSA 572

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG+HV Q G  ++ D  RFD TH + +T+ EL  +++ VN  I + +PV T+ M  
Sbjct: 573 LREVLGNHVQQAGQLVSDDYFRFDFTHFEALTAKELIEVQNLVNKKILEAIPVTTQEMPI 632

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA AL G KY D VRVVS      G  S   CGGTHV +T  + L  I  E S+
Sbjct: 633 EEAKKLGAMALFGEKYGDVVRVVS-----AGDFSVEFCGGTHVKNTANLGLFRIRQEGSV 687

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHA 775
            AG+RRIEA+TG     ++ G    +  + S LK  +   VV  V++  +  ++ Q    
Sbjct: 688 AAGVRRIEALTGMGVLKYINGMSAVIMDVCSLLKIANPKAVVEGVQKAEQLIKEQQREIN 747

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +   +L V  +        +   V  ++  I + ++  L+++ +  +       + ++  
Sbjct: 748 ELNSKLAVAQIGQLFAGTTEENGVRVVTGRIDKANADILRTMCEKARDFAPK-CVCVLAT 806

Query: 831 SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K +      ++ L    NA  + +  A+   GG GGG+P MA +G     K  +A+
Sbjct: 807 ENDGKVTFAAACGKEALALGANAGKIIKAVAQK-AGGNGGGKPDMAMAGAKQPEKISEAL 865

Query: 890 AGVAS 894
             V  
Sbjct: 866 DSVKE 870


>gi|157829157|ref|YP_001495399.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933886|ref|YP_001650675.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|205830193|sp|B0BVK9|SYA_RICRO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830194|sp|A8GU16|SYA_RICRS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157801638|gb|ABV76891.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908973|gb|ABY73269.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 877

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/901 (45%), Positives = 559/901 (62%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+  AR   LG G   T ++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKELARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTLNEAKC-------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ---------KIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTISAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDAI
Sbjct: 581 LGKHVTQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAI 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LCGGTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGAMALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA+ G+   + +   D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAVCGEFVITLMRENDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|89895167|ref|YP_518654.1| hypothetical protein DSY2421 [Desulfitobacterium hafniense Y51]
 gi|122482444|sp|Q24UT2|SYA_DESHY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89334615|dbj|BAE84210.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 875

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/908 (37%), Positives = 522/908 (57%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R  FL FF   GH +LPS+SLIP +DPTL+ T +GMVPFK  F  + +P +  
Sbjct: 1   MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L
Sbjct: 61  ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ EDEEA  LW + +G+S ++I      +N W+    GPCG CSEI+ D G
Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIKY--DPENLWAAGPVGPCGYCSEIYVDLG 174

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +R++EIWNLVFMQ+ +        LPK +IDTGMGLER+A+V+Q
Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDEAGLLTPLPKQNIDTGMGLERIASVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    +++G+ Y     N V  +V+ DH R+ SF+++DGI P +EG
Sbjct: 235 GAASNFDTDLFLPIINKVAELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARLLG  +P +  +   +  +    YPEL + +  I   LR E++
Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQKDYSHHYPELKENENFILNHLRLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L    + +L+G  AF LY+T+G P+++ +++L  +G++ +D
Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +FN A EE R  A+  S  + +           +  G T F+GY  L           
Sbjct: 414 METFNAAAEEHRRLAKEQSQQMKAVQESAAISEKAKALGTTPFLGYHELA---------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V+A+ + GE V++A  G +V +   ++PFYAE+GGQ+ D+G  
Sbjct: 464 -------------AHTKVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGVI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ +V+K   G   H  ++ +G+L T   +   +D   R   + +HSATHLL 
Sbjct: 511 RSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLLQ 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +TPD LRFD TH   +TSAEL+ +ED +N+ +  N+PV    M
Sbjct: 571 AALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNEAVLANMPVAAEEM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A ASGA AL G KY D VRVVS+     G +S  LCGGTH+ +TG+I L+ I+SE 
Sbjct: 631 SLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIRATGDIGLVKIISEG 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+ G  A  ++   ++++   A  LK    +++ R++ +  + + L+   
Sbjct: 686 GIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLEKEV 745

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   ++   ++         +  V  ++  +S  D   L++  D L+ K++ G+++L G
Sbjct: 746 QQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGVLVL-G 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + E K + + VVT   L   +A  + +  AK+ GGGGG GRP MAQ+GG +  K  +A+
Sbjct: 805 AAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKITGGGGG-GRPDMAQAGGKDAAKLGEAL 863

Query: 890 AGVASFLK 897
             V + +K
Sbjct: 864 DQVPAIIK 871


>gi|159030141|emb|CAO91033.1| alaS [Microcystis aeruginosa PCC 7806]
          Length = 878

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/904 (37%), Positives = 518/904 (57%), Gaps = 50/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL+FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P +   T
Sbjct: 10  SGSEIRQRFLDFFAARNHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKTPEFPRAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F+L  
Sbjct: 69  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPP 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF +W+   G+ A +I ++   DNFW    TGPCGPCSEI++D    
Sbjct: 125 ERLVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEADNFWVSGPTGPCGPCSEIYYDFHPE 184

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 185 L-GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVAN 243

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++  + ++  + Y   +    V+ +VI DH+RS   +IADGI  +N  RGY
Sbjct: 244 NYETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGY 303

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S Y  + + + +I+  L  E+ RF 
Sbjct: 304 VLRRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFL 363

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL+ +L    +   ++G  AF LYDT+G PL++ Q+I   +GL+ +D   F 
Sbjct: 364 ETLERGEKLLESILE--KEKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFE 420

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++Q+ R++A    +   T +     L E    T+F+GY  L+               
Sbjct: 421 QEMKKQQQRSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++  G+ VE A +G +V+VV DQTPFYAE+GGQ+GD G   GD +
Sbjct: 465 --------ATATVTAVLVAGKTVESAAAGTEVQVVLDQTPFYAESGGQIGDKGYLTGDNL 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DVQK++ GIF+H   +ERG++ T  ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 517 LIRVEDVQKES-GIFIHFGRIERGVVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 575

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++ + +SQ GS ++ + LRFD    +P+TSAEL+ +E+ +N  IA+       +M  E+A
Sbjct: 576 LVDAGISQAGSLVSFERLRFDFNCPRPLTSAELQQVEEQINTWIAEAHDTQIAVMGLEEA 635

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRV+ +        S  LCGGTHV +T EI L  I+SE+ I AG
Sbjct: 636 KQKGAIAMFGEKYGSEVRVIDIP-----RVSMELCGGTHVKNTAEIGLFKIISETGIAAG 690

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ G    ++L  +D+ ++ L    KV    +  R+  +  E +  + QL   K+
Sbjct: 691 IRRIEAVAGPAVLAYLNERDQVVRDLCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 750

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L LN  D        I +   +   + ++D+  L +  + LQ+K+  G ++L       
Sbjct: 751 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 810

Query: 835 KASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++      A       AK+  GG GGGRP++AQ+GG + +K  +A+A  
Sbjct: 811 KVSLVAAFSPRVIKDRGLQAGKFIGAIAKICAGG-GGGRPNLAQAGGRDASKLSEALAKA 869

Query: 893 ASFL 896
            S L
Sbjct: 870 KSQL 873


>gi|294793973|ref|ZP_06759110.1| alanine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455543|gb|EFG23915.1| alanine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 871

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/906 (36%), Positives = 498/906 (54%), Gaps = 55/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P  + +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGCKT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+ Y  + N  V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQR RAR   +                               +K    D   L  
Sbjct: 416 EAAMKEQRERAREARVK----------------------------EDAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVGPM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ ++
Sbjct: 568 KVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I +
Sbjct: 628 AKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFIGSFRLTSEAGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++      + +
Sbjct: 683 GVRRIEAITGRAALEAAKQDRLTIERMASELKTKSPQIEERLHQVLTEAKETVKELEQIR 742

Query: 779 LQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISK 832
            +++    +        + DV F+   +      EL+ + D    K+  SG++++     
Sbjct: 743 KEVSAAGAADIIAGKVMVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGAAMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A+  
Sbjct: 803 DDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEALKA 861

Query: 892 VASFLK 897
               LK
Sbjct: 862 GGEALK 867


>gi|291522221|emb|CBK80514.1| alanyl-tRNA synthetase [Coprococcus catus GD/7]
          Length = 880

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/908 (38%), Positives = 511/908 (56%), Gaps = 48/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ +R  FLEFF+  GH  + S SLIP ND +L+  NSGM P K  FTG E P  + VT
Sbjct: 6   SLNELRKMFLEFFESKGHLAMKSFSLIPHNDNSLLLINSGMAPLKPYFTGAEIPPRRRVT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R G    DL+NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD 
Sbjct: 66  TCQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTQVVGLDP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY ++Y +D+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE 
Sbjct: 122 DRLYPSIYQDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEK 180

Query: 183 IPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+ 
Sbjct: 181 YGCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHNHYTDLIQKNIDTGMGLERLAVVVQDV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +D+D  + L      + G+KY  +    V+ R+I DH+RS++F+I+DGI+P+NEGRG
Sbjct: 241 DSIFDVDTIQALRNKVCDLAGVKYLEKHETDVSIRIITDHIRSATFMISDGIMPSNEGRG 300

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + RLLG     +  L   +       YPEL + K  I   L  E+++F
Sbjct: 301 YVLRRLIRRAARHGRLLGIEGKFLAKLSATVIETSKDGYPELEEKKEFIFNVLTQEEDKF 360

Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            KT+D+GL +L+ +   L     ++L+G  AFKLYDT+G P+D+ ++IL  +G   ID  
Sbjct: 361 NKTIDQGLSILNEMEEKLSAEDKKVLDGADAFKLYDTYGFPMDLTKEILEEKGY-DIDEE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   ++EQR +AR           +   +   +    + F+GY+               
Sbjct: 420 GFTVCMQEQRQKARDARKVSNYMGKDATVYDEIDPSVTSVFVGYEKTE------------ 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S +  +  + E+ +    GQ   +   +TPFYA +GGQ+ DTG   G
Sbjct: 468 -----------CESPITVLTTETELTDALTDGQTGTIFTQETPFYATSGGQMADTGVITG 516

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ DV K   G   H  +V  G+ +    + L I+ + R   + NHSATHLL  A
Sbjct: 517 PEGTFEVKDVVKLLGGKIGHIGVVTSGMFKKGDVVKLAINKEKRSDTAKNHSATHLLQKA 576

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LGSHV Q GS    D LRFD TH   +T  EL  +ED VN+ IA+ LPV+T++MN 
Sbjct: 577 LRIVLGSHVEQAGSFNNQDKLRFDFTHFSALTQEELDRVEDIVNEEIAKGLPVLTKVMNI 636

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           EDA  +GA AL G KY+D VRVVS+     G  S  LCGGTH  +T  I    I+SE+ +
Sbjct: 637 EDAKKTGAMALFGEKYSDDVRVVSM-----GDFSKELCGGTHTDNTASIAAFKIISETGV 691

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRIEA+TG     +    ++KL   A   K     +V R+E + EE + L   + +
Sbjct: 692 AAGVRRIEALTGNGVFKYYKEVEKKLHEAAKTAKCDPAQLVKRIEGLHEEIKTLTAENNQ 751

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K ++  + +         +  V+F+   + ++D +EL ++ D L+ K+  G+I+L    
Sbjct: 752 LKNKMAKDAMGDVMNQVKDVNGVSFLPVHVKDIDMQELMNLGDQLKAKLGDGVILLAS-E 810

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K S+L + T+  + +  +A +L +  AK++GGGGG GRP+MAQ+GG N    +QA+ 
Sbjct: 811 NGGKVSLLAMATDGAMKKGAHAGNLIKAVAKLVGGGGG-GRPNMAQAGGKNPAGINQALE 869

Query: 891 GVASFLKK 898
             A  L K
Sbjct: 870 AGAEELAK 877


>gi|99036095|ref|ZP_01315128.1| hypothetical protein Wendoof_01000018 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 877

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/899 (44%), Positives = 560/899 (62%), Gaps = 51/899 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHGS 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 181 P-------NLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFG 359
           RR++RRA  Y  LLGY + L+  + P L     SAY   EL++AK LIE TL+SE+E F 
Sbjct: 291 RRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFK 350

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  DIL  + +   D   F+
Sbjct: 351 DTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDILKEKKI-NFDQKGFD 409

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ RARA   G G  + E++WF L  K+G T+F+GY+    S             
Sbjct: 410 DAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYEFNEVSD------------ 457

Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + + AIV  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I   
Sbjct: 458 ----------AKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH  L 
Sbjct: 508 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +   
Sbjct: 568 KILGDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQ 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS+  
Sbjct: 628 AIDEGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAF 681

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKR 777
           G+RRIEA+TGQ A +++   +  LK +A F+K     +  R+  + +E++K +  I    
Sbjct: 682 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLY 741

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           K  ++ E++   +I  +NF+SH  +++ +  ++  +  LQ++    +I      K+ K  
Sbjct: 742 KKLVSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKD-KTV 798

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++I V++DL+++ +A +L  ++ K       GG   +AQ+G  + NK D AI  + S +
Sbjct: 799 LIIKVSKDLINKISAKELISIAVK----KNCGGNAELAQTGC-DSNKIDDAITAIYSKI 852


>gi|269798241|ref|YP_003312141.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094870|gb|ACZ24861.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 871

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/906 (36%), Positives = 500/906 (55%), Gaps = 55/906 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P  + +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTC 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QK +R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGCKT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+ Y  + N  V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQR RAR   +                               +K    D   L  
Sbjct: 416 EAAMKEQRERAREARVK----------------------------EDAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++     +S V  + +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVGPM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ ++
Sbjct: 568 KVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEVLVNEEILKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I +
Sbjct: 628 AKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG+ A          ++ +AS LK     +  R+ ++  E ++      + +
Sbjct: 683 GVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLAEAKETAKELEQIR 742

Query: 779 LQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISK 832
            +++    +        + DV F++  +      EL+ + D    K+  SG++++  +  
Sbjct: 743 KEVSAAGAADIIAGKVVVGDVEFVAAAVKASSIDELRDLADMGLDKMNGSGVVLVGAVMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A+  
Sbjct: 803 DDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMEALKA 861

Query: 892 VASFLK 897
               LK
Sbjct: 862 GGEALK 867


>gi|166365301|ref|YP_001657574.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|205830148|sp|B0JI84|SYA_MICAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|166087674|dbj|BAG02382.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 874

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/904 (38%), Positives = 518/904 (57%), Gaps = 50/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL+FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P +   T
Sbjct: 6   SGSEIRQRFLDFFAARNHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKTPEFPRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F+L  
Sbjct: 65  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF +W+   G+ A +I ++   DNFW    TGPCGPCSEI++D    
Sbjct: 121 ERLVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEEDNFWVSGPTGPCGPCSEIYYDFHPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 181 L-GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVAN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++  + ++  + Y   +    V+ +VI DH+RS   +IADGI  +N  RGY
Sbjct: 240 NYETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S Y  + + + +I+  L  E+ RF 
Sbjct: 300 VLRRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL+ +L    +   ++G  AF LYDT+G PL++ Q+I   +GL+ +D   F 
Sbjct: 360 ETLERGEKLLESILE--KEKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFE 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q +++Q+ R++A    +   T +     L E    T+F+GY  L+               
Sbjct: 417 QEMKKQQQRSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ--------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++  G+ VE A +G +V+VV D+TPFYAE+GGQ+GD G   GD +
Sbjct: 461 --------ATATVTAVLVAGKTVESAAAGTEVQVVLDRTPFYAESGGQIGDKGYLTGDNL 512

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ GIF+H   +ERGI+ T  ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 513 LIRIEDVQKES-GIFIHFGRIERGIVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 571

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS ++ D LRFD    +P+TS+EL+ +E+ +N  IA+       +M  E+A
Sbjct: 572 LVDGGISQAGSLVSFDRLRFDFNCPRPLTSSELQQVEEQINTWIAEAHDTQIAVMGLEEA 631

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRV+ +        S  LCGGTHV +T EI L  I+SE+ I AG
Sbjct: 632 KQKGAIAMFGEKYGSEVRVIDIPS-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 686

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ G    ++L  +D+ +++L    KV    +  R+  +  E +  + QL   K+
Sbjct: 687 IRRIEAVAGPAVLAYLNERDQVVRALCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 746

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L LN  D        I +   +   + ++D+  L +  + LQ+K+  G ++L       
Sbjct: 747 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 806

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++      A       AK+  GG GGGRP++AQ+GG + +K  +A+A  
Sbjct: 807 KVSLVAAFSPRVIKDKGLQAGKFIGAIAKICAGG-GGGRPNLAQAGGRDASKLSEALAKA 865

Query: 893 ASFL 896
            S L
Sbjct: 866 KSQL 869


>gi|167767297|ref|ZP_02439350.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1]
 gi|167711272|gb|EDS21851.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1]
          Length = 868

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/900 (39%), Positives = 510/900 (56%), Gaps = 48/900 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +LEFF+  GH  L S SL+P ND +L+  N+GM P K  FTGQE P    VTT QKC+R
Sbjct: 1   MYLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVIGLDPDRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y++D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G P 
Sbjct: 117 YEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKYGCGSPD 175

Query: 190 SS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            +   + +RY+E+WN VF QFE         L   +IDTGMGLER+A V+QE  + +D+D
Sbjct: 176 CTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVVVQEVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K +     +V G+ Y  ++   V+ RVI DH+RS++F+++DGI P+NEGRGYVLRR++
Sbjct: 236 SIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSNEGRGYVLRRLI 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  +   +  E    YPEL +    I   L  E+++F KT+D+G
Sbjct: 296 RRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQEEKQFNKTIDQG 355

Query: 366 LVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   +     + L G  AFKLYDT+G PLD+  +IL  +G   +D   F + ++
Sbjct: 356 LSILADMEKAMNEKGSKELAGADAFKLYDTYGFPLDLTIEILEEKGFT-VDKEGFEKEMQ 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR  ARA          +   +   +    T+F+GYD L                    
Sbjct: 415 VQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL-------------------- 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   + A+  + E+V     G K  +V DQT FYA +GGQ  D G  I      ++
Sbjct: 455 ---TCEGEITAMTTETEVVSTLNKGDKGTIVADQTAFYATSGGQEADKGVIISGDASFEV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K + G F H   V  G        V T++ +NR   + NHSATHLL  AL  +LG+
Sbjct: 512 EDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHLLQKALREVLGT 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS    + LRFD TH  P++  E+  +E  VN+ IAQ+LPVVT++M+ E+A  +G
Sbjct: 572 HVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTKVMSMEEAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVVS+     G  S  LCGGTHV +TG I    I+SE+ + +G+RRI
Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILSETGVASGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+T Q   ++   Q+E+LK  A  LK +   ++ R+E +  E ++L+  +   K +L  
Sbjct: 687 EAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKSENESLKSKLAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        ++  V  ++  I +VD   L+ + D L++K+  G+I+L    K+ K  +
Sbjct: 747 DALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVLAS-QKDGKVFL 805

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + +VT++      +A +L +  A  +GGGGG GRP+MAQ+GG N     +A+A V   L+
Sbjct: 806 VAMVTDEAQKAGAHAGNLIKAIAGCVGGGGG-GRPNMAQAGGKNPAGIPEAVAKVKEILE 864


>gi|329724728|gb|EGG61234.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 876

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/911 (37%), Positives = 513/911 (56%), Gaps = 55/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPA 293
           + Q    NY+ DLF  +I+  E V+G KY  ++   V  +VI DH+R+ SF IADG LPA
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPA 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP +      I+  ++S
Sbjct: 297 NEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRVIKS 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+ERF +TL+ GL +L+ ++      D+++ G  AFKLYDT+G P+++ +++     L+ 
Sbjct: 357 EEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLS- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+ +F Q +++QR RAR       S   +     LK     +QF+GY+           
Sbjct: 416 VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV--LKNIQDESQFVGYETTDY------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S++  I+  GE V+   +G+ +  +  +TPFYA +GGQ+ D G
Sbjct: 467 ----------------QSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVSGGQVADKG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TDV K   G  +H  IV+ G       +   ++ ++RR +  NHSATHL
Sbjct: 511 TVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQKNHSATHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS + P+ LRFD +H  P+T  E+  +E  VN+ I + + V  +
Sbjct: 571 LHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIWRAIDVRIQ 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ E+A + GA AL G KY D VRVV++        S  LCGG HV++T EI L+ IVS
Sbjct: 631 EMSIEEAKSIGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVNNTAEIGLVKIVS 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQ 771
           ES   AG+RRIEA+TG+ A  HL   + +  ++ + LKV   N VV +V+++ EE + L 
Sbjct: 686 ESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLL 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               +R      L++   +     I ++  ++  +   + K ++S MD  + K+Q  II+
Sbjct: 746 KQLEQRNKEITSLKMGDIEEQVELINNLKVLATEVEIPNPKAIRSTMDDFKSKLQDTIIV 805

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           LVG   + K SV+  V + L ++  A DL +    ++ GG GGGRP MAQ GG    K  
Sbjct: 806 LVGQV-DGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQGGGTQPEKIT 863

Query: 887 QAIAGVASFLK 897
           +A+  +  ++K
Sbjct: 864 EALRFIKDYIK 874


>gi|126698879|ref|YP_001087776.1| alanyl-tRNA synthetase [Clostridium difficile 630]
 gi|254974827|ref|ZP_05271299.1| alanyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255092215|ref|ZP_05321693.1| alanyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255100300|ref|ZP_05329277.1| alanyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255306239|ref|ZP_05350411.1| alanyl-tRNA synthetase [Clostridium difficile ATCC 43255]
 gi|255313954|ref|ZP_05355537.1| alanyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255516634|ref|ZP_05384310.1| alanyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255649733|ref|ZP_05396635.1| alanyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|260682889|ref|YP_003214174.1| alanyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260686487|ref|YP_003217620.1| alanyl-tRNA synthetase [Clostridium difficile R20291]
 gi|306519842|ref|ZP_07406189.1| alanyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|122974138|sp|Q18BE7|SYA_CLOD6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|115250316|emb|CAJ68138.1| Alanyl-tRNA synthetase [Clostridium difficile]
 gi|260209052|emb|CBA62175.1| putative alanyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260212503|emb|CBE03433.1| putative alanyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 879

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/908 (36%), Positives = 542/908 (59%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR+ FLEFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P    +
Sbjct: 4   MGLNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG T RH TFFEM+GNFSFG YFK  +I+  W+ +T+  ++ 
Sbjct: 64  CTSQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY+ED++++ +W K      ++++R+  +DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 120 EDKIWVTVYEEDDDSYDIWAKEMNFPEERMVRLGKDDNFWEIG-TGPCGPCSEIYFDRGE 178

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+E WN VF QF++  +    +L   +IDTGMGLERM  ++Q 
Sbjct: 179 EYGCDNPDCKPGCDCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K +++A E++TG+KY  N  N ++ R+I DH+R+ +FL++DG+LP+NEGR
Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG  E  +  L+  +      AYP L++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D+G  +L+  +  L      +L+G  AFKLYDT+G P+D+ ++IL    L+ +D 
Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGKTVLSGQEAFKLYDTYGFPIDLTKEILEEEHLS-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ +E+Q+ RAR     +   + ++   S  E    + F GY  + G          
Sbjct: 418 EAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYG---------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           ++AIV+  E+V+ A  G KV +V D T FY E GGQ+GD G   
Sbjct: 468 -------------EGTIEAIVKDDELVQSAEEGDKVSIVLDNTTFYPEGGGQVGDCGLIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + + L++ + +K A     H  I++ G +     +   +D + R   + NHSATHLLH 
Sbjct: 515 NENLVLEVLNTKKGANNSIKHIGIIKSGRISNGDKVKTLVDRETRMSAARNHSATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I  +L +   IMN
Sbjct: 575 ALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY D VRVVS+     G +S+ LCGGTH+++T ++ +  I+SE  
Sbjct: 635 IKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEGG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG+    +L  +D  +  +   LK  + N++ R+  + EE + L     
Sbjct: 690 VAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKELH 749

Query: 776 KRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +++++ +        ++  VN +++    +D   L+   D L+ K+ SG+++L  +
Sbjct: 750 DMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLANV 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + ++  T+D+LD+  ++ ++ R  AK+ GG GG GRP+MAQ+G  + +K DQA+
Sbjct: 810 V-DDKVNFVVTATKDVLDKGIHSGNIVREVAKIAGGKGG-GRPNMAQAGASDVSKVDQAL 867

Query: 890 AGVASFLK 897
           +  +  +K
Sbjct: 868 SYASEVIK 875


>gi|308274548|emb|CBX31147.1| Alanyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 875

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/906 (41%), Positives = 546/906 (60%), Gaps = 45/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FLE+F+K+ H+++ SSSL+P  DPTL+FTN+GMVPFK  F G+EK  Y   
Sbjct: 1   MTGSDIRRQFLEYFKKHDHQIVRSSSLVPVEDPTLLFTNAGMVPFKRTFLGEEKRGYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+A++ AWDLL   F + 
Sbjct: 61  ASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEKAVEYAWDLLVTGFGIP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++VY +D++A  +W K +G+S D+I+R    DNFWSM +TGPCGPCSEI  D+GE
Sbjct: 121 VDKLWVSVYLDDDQAHDIWHKNAGVSEDRIVRFGDKDNFWSMGDTGPCGPCSEILIDRGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +RY+EIWNLVFMQFE+    +   LP+ SIDTGMGLER+A+V+Q 
Sbjct: 181 KYGCGKPDCKVGCECDRYLEIWNLVFMQFERDASGKMTPLPRPSIDTGMGLERIASVVQN 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              NYD DL   +I+ +EQ++  +   +  + V  +VI DH R+++FLI DGILP+NEGR
Sbjct: 241 VPTNYDTDLIIPIIRKTEQLSQKRLGDSSVSDVAMKVIADHSRAAAFLICDGILPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRIMRRA+ Y R +G  +P +      +   M  AYPE   A+  I   +++E+ R
Sbjct: 301 GYVLRRIMRRAIRYGRNIGLVKPFLHETSQVVIETMKDAYPEFEGAEAFISNVIKNEEAR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLD GL LL+  LS +       ++GD+ FKLYDT+G P+D+++D++    L  +D+
Sbjct: 361 FSETLDNGLRLLNDTLSEIKAKGLNTISGDIIFKLYDTYGFPVDVVRDVVRDENL-FLDM 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN A++ Q+ ++R  S+   SG TE  + +L       +F+GYD              
Sbjct: 420 DGFNAAMKNQKEKSR--SVATFSGITE-AYKNLSANRLIPEFVGYD-------------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  IV+ G+   EAV+G  +E+V ++TPFY E+GGQ GD+G   
Sbjct: 463 ---------KQISDSKVLLIVKDGKETAEAVAGSDIEIVTEETPFYGESGGQTGDSGIIS 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              ++++I D  K A GI +H   +  G +    S+ L++D + R   + NH+ATH+LH 
Sbjct: 514 SSNLKIEIADTIKDAAGIIIHKGKIITGTVSKGQSVTLSVDNKRRSATANNHTATHILHF 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L  ILG HV Q GS ++ + LRFD TH   + S  L+ IE  VN+ I +N       M+
Sbjct: 574 ILKRILGDHVKQAGSFVSSERLRFDFTHFSQVDSDTLEKIETLVNERIRENALTCIEEMD 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A  SGA AL   KY D VRV+S+     G  S  LCGGTH   TG I L  I++ESS
Sbjct: 634 AEKAFKSGATALFEEKYGDVVRVISL-----GEFSKELCGGTHTDRTGNIGLFKIIAESS 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773
           + +G+RRIEA+TG  A +++    + L   A  +K     +  +VE++  + +  + +L 
Sbjct: 689 VASGVRRIEALTGAAALNYIQQNMKTLNETARIVKEKPEALPQKVEKMLIQQKAYEKELE 748

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830
             K K+     D   ++I  +N +  +  +V   +   L+ + D  + KI+SGI++L G 
Sbjct: 749 KTKAKIASRAADDMDNEIKSINGVKVLAKKVLADNPAALRDLADKFRDKIKSGIVVL-GS 807

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +   K  ++++VT+DL  +++A ++ +  + V+GGGGG GRP MAQ+GG    K D+A+A
Sbjct: 808 AAGSKVFLIVIVTKDLAGKYHAGNIVKQVSSVVGGGGG-GRPDMAQAGGSIPEKLDEALA 866

Query: 891 GVASFL 896
           G    +
Sbjct: 867 GAYDII 872


>gi|222100169|ref|YP_002534737.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|221572559|gb|ACM23371.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 864

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/902 (39%), Positives = 542/902 (60%), Gaps = 49/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  +
Sbjct: 4   MTSEEIREAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRLGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I+A E++TG+ Y  +    ++ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIIKAIEELTGVSYKTDEEKDISIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG  EP +  ++ A+  +MG  YPE+++ K +++E L SE+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMNEPFLYKVVDAVVEKMGKVYPEIVRGKDMVKEVLSSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++   GK   ++   AF+LYDT+GLPL++  +I   +G+  ID+
Sbjct: 359 NRFLKTLEQGMRIFDELVEKKGK---IDSQDAFRLYDTYGLPLELTLEIAKEKGVE-IDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ+ ++R     +      +   SL E +  T+F GY+ L            
Sbjct: 415 KDFDRYMKEQQRKSREAMGKVEFAKRYEYLESLPEGF-KTEFTGYERLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         +    I ++   +EEA     VEVVF +TPFYAE GGQ+ D G   
Sbjct: 464 -------------EAETVLIAKENRPLEEAKEKDTVEVVFSRTPFYAEKGGQVSDVGTVE 510

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +    ++  V +  EG+ VH   V +GILR    + L +D + R+    NH+ATHLLH 
Sbjct: 511 WESGEGRVEYVFEALEGVIVHRIRVLKGILRRGQKVFLKVDRKRRKDTMRNHTATHLLHA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + P+ LRFD TH + +++ E+K +ED VN+ I Q +PV  R  +
Sbjct: 571 ALRKVLGEHVRQAGSLVAPERLRFDFTHYRALSAEEIKKVEDMVNEWIMQAIPVEVRYTS 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+AI SG  AL   KY D VRVV          S  LCGGTHV +TG+I L  IVSE S
Sbjct: 631 YEEAIRSGVIALFTEKYGDVVRVVE-----VPGVSKELCGGTHVKNTGQIGLFKIVSEES 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RR+EA+TG      +   ++ +  L   L   +  ++ RVE + E+ R+L+   +
Sbjct: 686 VSSGVRRVEAVTGFYTLELIRRYEDVMTRLKELLGAGENEIINRVESLREKVRELERRLS 745

Query: 776 KRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + ++  + E +S  K+ D       +   V+SK L  + D +  + +SG+++L     E 
Sbjct: 746 QGRV--SEERISEKKLNDGTKLFYGVFEGVESKHLGGIADNVLNREKSGVVVLFSRF-ED 802

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+++ V+ DL+++++A  +AR  AK L GG GGGR + AQ+GG +  + D+ +  +  
Sbjct: 803 KVSLVVKVSNDLIEKYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERLDEVLNRLEE 861

Query: 895 FL 896
           FL
Sbjct: 862 FL 863


>gi|42520697|ref|NP_966612.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|48428514|sp|P61709|SYA_WOLPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42410437|gb|AAS14546.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 877

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/899 (44%), Positives = 560/899 (62%), Gaps = 51/899 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHGS 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 181 P-------NLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFG 359
           RR++RRA  Y  LLGY + L+  + P L     SAY   EL++AK LIE TL+SE+E F 
Sbjct: 291 RRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFK 350

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            TL +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  D+L  + +   D   F+
Sbjct: 351 DTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDVLKEKKI-NFDQKGFD 409

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+ EQ+ RARA   G G  + E++WF L  K+G T+F+GY+    S             
Sbjct: 410 DAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYEFNEVSD------------ 457

Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + + AIV  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I   
Sbjct: 458 ----------AKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH  L 
Sbjct: 508 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +   
Sbjct: 568 KILGDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQ 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS+  
Sbjct: 628 AIDEGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAF 681

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKR 777
           G+RRIEA+TGQ A +++   +  LK +A F+K     +  R+  + +E++K +  I    
Sbjct: 682 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLY 741

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           K  ++ E++   +I  +NF+SH  +++ +  ++  +  LQ++    +I      K+ K  
Sbjct: 742 KKLVSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKD-KTV 798

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++I V++DL+++ +A +L  ++ K       GG   +AQ+G  + NK D AI  + S +
Sbjct: 799 LIIKVSKDLINKISAKELISIAVK----KNCGGNAELAQTGC-DSNKIDDAITAIYSKI 852


>gi|89100981|ref|ZP_01173826.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084317|gb|EAR63473.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 877

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/915 (39%), Positives = 524/915 (57%), Gaps = 58/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  FLEFF++ GH + PS+ L+P +DP+L++ NSG+   K  F G+  P  
Sbjct: 1   MRNLTGSEIRRLFLEFFKEKGHSVEPSAPLVPHDDPSLLWINSGVATLKKYFDGRVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT   
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIDWAWEFLTDER 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +L +T++ EDEEAF +W    G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDKEKLSVTIHPEDEEAFSIWTNKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G                E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGPEYGDDQNDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V+Q    N+D DLF  +I A E+++G KY  +N      +VI DH+R+ +F I DG 
Sbjct: 234 MASVVQNVATNFDTDLFMPIIHAVEKISGSKYGESNEQDTAFKVIADHIRTVAFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+  +   M   YP++ +    I++ 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQININRPFMFELVDVVGEIMADFYPQVTEKAEFIKKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+    +    I+ G   F+LYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNDGLSILSSVIKKEKEKGSNIIPGSDVFRLYDTYGFPVELTEEYAEEE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  ID   F   +E QR RAR     +GS   ++    L +    ++F+GY+ L     
Sbjct: 414 GMK-IDQDGFEAEMEGQRERARTARQDVGSMKVQE--GVLGDIKTESRFVGYEGLE---- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S+V  I++ G++ E A +G++V+++ DQTPFYAE+GGQ+
Sbjct: 467 -------------------AKSVVAVIIKDGQVAEAAGAGEEVQLILDQTPFYAESGGQI 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G+G+++ I DVQK   G  +H A+VE GIL TE  +   +D  +R ++  NH+
Sbjct: 508 ADNGVLEGEGVKVIIKDVQKAPNGQNLHSAVVESGILETEAGVTAKVDPDSRNKVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG+HV+Q GS + PD LRFD +H   +   EL+ IE+ VN+ I  +L 
Sbjct: 568 ATHLLHQALKDVLGTHVNQAGSLVGPDRLRFDFSHFGQVKEDELEKIEEIVNEKIWSSLN 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV      ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L 
Sbjct: 628 VVIENKGIDEAKAMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVRNTSAIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I+SES I AG RRIEA TG+ A   L  Q   L   A+ LK S  +V  RV+ +  E R
Sbjct: 683 KIISESGIGAGTRRIEAATGEAAYKLLKEQVNILTEAAASLKSSPRDVASRVDALLGEMR 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           +LQ  +     +L   +         +   + +++  +   D   L+++ D L++K+ S 
Sbjct: 743 QLQRENESLSAKLGNIEAGSLVSKAKEENGITYLAAKVQAADMNNLRNMADDLKQKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++L G   E K +++  VT+D +   ++A  + +  A   GGGGG GRP MAQ+GG + 
Sbjct: 803 VVVL-GSVNEGKVNLIAAVTKDYIEKGYHAGKVIKEVAARCGGGGG-GRPDMAQAGGKDP 860

Query: 883 NKADQAIAGVASFLK 897
            K + A+  V  ++K
Sbjct: 861 EKLESALQFVEEWVK 875


>gi|256962036|ref|ZP_05566207.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|293383058|ref|ZP_06628976.1| alanine--tRNA ligase [Enterococcus faecalis R712]
 gi|293388219|ref|ZP_06632740.1| alanine--tRNA ligase [Enterococcus faecalis S613]
 gi|312907353|ref|ZP_07766344.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909969|ref|ZP_07768817.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|256952532|gb|EEU69164.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|291079723|gb|EFE17087.1| alanine--tRNA ligase [Enterococcus faecalis R712]
 gi|291082403|gb|EFE19366.1| alanine--tRNA ligase [Enterococcus faecalis S613]
 gi|310626381|gb|EFQ09664.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289927|gb|EFQ68483.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 880

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II +   DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDVG--DNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + DVN + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +  GGGGGRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKV-DGGGGGRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|295695750|ref|YP_003588988.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295411352|gb|ADG05844.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 878

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/904 (38%), Positives = 520/904 (57%), Gaps = 52/904 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEFF    H++ PS+SL+P +DP+L++ N+GM P K  F G++ P    + + 
Sbjct: 4   AEIRKKFLEFFASKDHDVYPSASLVPVDDPSLLWINAGMAPLKPFFDGRKVPPNPRIASS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVG+T RH TFFEMLGNFS G YFK+ AI  AW+ LT+   LD  R
Sbjct: 64  QKCIRT----NDIENVGKTARHQTFFEMLGNFSIGDYFKKEAIDWAWEFLTEHMGLDPER 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L +T++ ED+EA++LW +  G+ A +I R+   DNFW + E GP GPCSEIF+D+GE   
Sbjct: 120 LSVTIHPEDDEAYELWHRRIGVPAHRIFRM--EDNFWEIGE-GPSGPCSEIFYDRGENRG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            G P  +   E +R++EIWNLVF QF          LPK +IDTGMGLERMA+V+Q+  +
Sbjct: 177 CGRPECNVGCECDRFLEIWNLVFTQFNHNPDGTYTPLPKKNIDTGMGLERMASVMQDVDS 236

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N+D DLF+ +I+A+ +  G++Y       V  +VI DH+R++ F + DG+LP NEGR Y+
Sbjct: 237 NFDTDLFRPIIEAAAEAAGVQYGQEKQWDVALKVIADHIRTAVFAVGDGVLPGNEGRSYI 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ Y R LG+  P +  L+P +   MG AYPE+++    I   +++E+ERF +
Sbjct: 297 IRRLLRRAVRYGRNLGFDRPFLYRLVPVVGEVMGEAYPEIVEKGDFIVRAVKAEEERFLE 356

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G  +L+  +  L       L G+ AF+LYDT G P+D+ ++I   +G+  +D   F
Sbjct: 357 TLAEGEQVLEDYIEKLRSAGRTTLAGEDAFRLYDTFGFPIDLTKEIASEQGI-DVDEEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            QALE QR RARA    + S  +++    L +    ++F+GY++L               
Sbjct: 416 AQALEAQRERARAARQDVESMQSKR--GVLVDLEAPSRFVGYEVLET------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S V+ +V    +VE    G +  +V ++TPFYAE+GGQ+ D G      
Sbjct: 461 ----------QSRVEVLVVDDRVVERVSEGDQCLIVLNETPFYAESGGQVADRGTIETAT 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            RL++ DVQK   G  VH   V RG +     +   +D + R  +  NH+ATHLLH AL 
Sbjct: 511 ARLEVEDVQKAPRGQHVHRCRVVRGTVTAGEVVRARVDRRYREDIIKNHTATHLLHKALR 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +    LRFD +H  P+   EL+++E  VN+ I +N PV  R M  ++
Sbjct: 571 EVLGEHVAQAGSLVADSRLRFDFSHYGPLAPEELEAVERVVNEEIWRNEPVDIREMPLDE 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY +RVRVV       G  S  LCGG HV  T EI +  IVSE+ I +
Sbjct: 631 AKAMGAMALFGEKYGERVRVVK-----AGDFSIELCGGCHVRRTSEIGVFKIVSETGIGS 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-- 776
           G+RRIEA+TG+ A + L  + + L   AS L+V+  +V  ++E++  + ++ +       
Sbjct: 686 GVRRIEAVTGRHAYAFLDSRLKGLDRAASLLRVAPADVPDKLEQVLGDMKETERELESWR 745

Query: 777 ---RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
               + Q          I  V  ++ ++      +++ ++D L + I SG+++L G  +E
Sbjct: 746 DRWIRGQALRLADRVTDIQGVPVVAEVVEGATPDQMRRMVDVLWETIHSGVVVL-GSKQE 804

Query: 834 KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K   +  V+ D +    +A  L +  A   GGGGG G+P +AQ+GG +  K  +A++ V
Sbjct: 805 DKVMFVAAVSPDWVAKGLHAGQLVKEVAAAAGGGGG-GKPDLAQAGGRHPEKLAEALSRV 863

Query: 893 ASFL 896
             ++
Sbjct: 864 PGWV 867


>gi|261415443|ref|YP_003249126.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371899|gb|ACX74644.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 882

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/911 (37%), Positives = 512/911 (56%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F++FF+  GH  + SS ++P +DPTLMFTN+GM  FK IF G     ++  
Sbjct: 5   MTSAQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L 
Sbjct: 65  CNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLP 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + RL+ TVY +D+EA+++WK +SGL  D+I+R   + NFW M +TGPCGPCSEI +D+G 
Sbjct: 125 KERLFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGD 184

Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                E     + G + E +RYIEIWN VFMQ+E+ +      L   ++D GMG ER+  
Sbjct: 185 LATQAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDIGMGFERICA 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +LQ KT+NYD D+F  +I    +++G+ Y +G     HRVI DH+R+ SF IADG LP+N
Sbjct: 245 ILQGKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  +ARLLG  +P +  L+  L   MG A+PE+ + K  +   ++SE
Sbjct: 305 EGRGYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F +TLD GL     + + L K + + GD  F LYDT+G P D+   +   +GL  ID
Sbjct: 365 EESFIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGL-LID 423

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              + + + EQ+ RARA+     +    + W   +    +T F+GY+L            
Sbjct: 424 EEGYEKCMNEQKERARANMKQGINTMGTEGWT--QYSEASTNFVGYELSA---------- 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                  + ++V        + +V + +PFYAE GGQ+GD G  
Sbjct: 472 ----------------------CETKVVRWREDKGVLSIVLETSPFYAEMGGQVGDKGTL 509

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRT---EMSLVLTIDYQNRRQLSINHSATH 591
           +   + +Q+ D  K      +    V +G           + T+D   R  +  NHSATH
Sbjct: 510 VSADLEIQVFDTVK-VNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG+HV Q GS ++ + LRFD +H   +T+ E++ +ED VN  I + LPV T
Sbjct: 569 LLQAALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M+ ++A ASGA AL G KY D+VRVV +  + G   S  LCGG HV +TG I ++ IV
Sbjct: 629 DVMDVDEAKASGAMALFGEKYGDKVRVVKMG-DAGVEFSRELCGGLHVQNTGNIGMVKIV 687

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS+ AG+RRIEA++G+ A S L    + L +L   L+     V+ R+++ + + + L+
Sbjct: 688 SESSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLE 747

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIML 827
                 KL+L     +      +N M   +      +  ++ K+++D +Q K+    + +
Sbjct: 748 KSLQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEKYKNLLDGVQNKLDVDSVAV 807

Query: 828 VGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +        S+ ++V +++      A D+ R  AK    G GGGRP  AQ+G     K  
Sbjct: 808 IANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKACN-GKGGGRPDRAQAGTREPEKIA 866

Query: 887 QAIAGVASFLK 897
           +AIA   ++++
Sbjct: 867 EAIANANNWIR 877


>gi|219669584|ref|YP_002460019.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219539844|gb|ACL21583.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 875

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/908 (37%), Positives = 521/908 (57%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + +R  FL FF   GH +LPS+SLIP +DPTL+ T +GMVPFK  F  + +P +  
Sbjct: 1   MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR      DL+ VG+T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L
Sbjct: 61  ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +L+ITV+ EDEEA  LW + +G+S ++I      +N W+    GPCG CSEI+ D G
Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIKY--DPENLWAAGPVGPCGYCSEIYVDLG 174

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +R++EIWNLVFMQ+ +        LPK +IDTGMGLER+A+V+Q
Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDESGLLTPLPKQNIDTGMGLERIASVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+D DLF  +I    +++G+ Y     N V  +V+ DH R+ SF+++DGI P +EG
Sbjct: 235 GAASNFDTDLFLPIINKVSELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YARLLG  +P +  +   +  +    YPEL + +  I   LR E++
Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQRDYSHHYPELKENENFILNHLRLEEK 354

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL++G  +L   +  L    + +L+G  AF LY+T+G P+++ +++L  +G++ +D
Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +FN A EE R  A+  S  + +           +  G T F+GY  L           
Sbjct: 414 METFNAAAEEHRRLAKEQSQQMKAVQESAAISEKAKALGTTPFLGYHELA---------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V+A+ + GE V++A  G +V +   ++PFYAE+GGQ+ D+G  
Sbjct: 464 -------------AHTRVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGLI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                  ++ +V+K   G   H  ++ +G+L T   +   +D   R   + +HSATHLL 
Sbjct: 511 RSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLLQ 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS +TPD LRFD TH   +TSAEL+ +ED +N  +  N+PV    M
Sbjct: 571 SALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNKAVLANMPVAAEEM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + + A ASGA AL G KY D VRVVS+     G +S  LCGGTH+ +TG+I L+ I+SES
Sbjct: 631 SLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIHATGDIGLVKIISES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+ G  A  ++   ++++   A  LK    +++ R++ +  + + L+   
Sbjct: 686 GIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLEKEV 745

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   ++   ++         +  V  ++  +S  D   L++  D L+ K++ G+++L G
Sbjct: 746 QQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGVLVL-G 804

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + E K + + VVT   L   +A  + +  AK+ GGGGG GRP MAQ+GG +  K  +A+
Sbjct: 805 AAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKITGGGGG-GRPDMAQAGGKDAAKLGEAL 863

Query: 890 AGVASFLK 897
             V   +K
Sbjct: 864 DQVPGIIK 871


>gi|255655294|ref|ZP_05400703.1| alanyl-tRNA synthetase [Clostridium difficile QCD-23m63]
 gi|296451278|ref|ZP_06893018.1| alanine--tRNA ligase [Clostridium difficile NAP08]
 gi|296880370|ref|ZP_06904333.1| alanine--tRNA ligase [Clostridium difficile NAP07]
 gi|296259884|gb|EFH06739.1| alanine--tRNA ligase [Clostridium difficile NAP08]
 gi|296428611|gb|EFH14495.1| alanine--tRNA ligase [Clostridium difficile NAP07]
          Length = 879

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 542/908 (59%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR+ FLEFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P    +
Sbjct: 4   MGLNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG T RH TFFEM+GNFSFG YFK  +I+  W+ +T+  ++ 
Sbjct: 64  CTSQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY+ED++++ +W K      ++++++  +DNFW +  TGPCGPCSEI+FD+GE
Sbjct: 120 EDKIWVTVYEEDDDSYDIWAKEMNFPEERMVKLGKDDNFWEIG-TGPCGPCSEIYFDRGE 178

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+E WN VF QF++  +    +L   +IDTGMGLERM  ++Q 
Sbjct: 179 EYGCDNPDCKPGCDCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K +++A E++TG+KY  N  N ++ R+I DH+R+ +FL++DG+LP+NEGR
Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG  E  +  L+  +      AYP L++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D+G  +L+  +  L      +L+G  AFKLYDT+G P+D+ ++IL    L+ +D 
Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGKTVLSGQEAFKLYDTYGFPIDLTKEILEEEHLS-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +FN+ +E+Q+ RAR     +   + ++   S  E    + F GY  + G          
Sbjct: 418 EAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYG---------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           ++AIV+  E+V+ A  G KV +V D T FY E GGQ+GD G   
Sbjct: 468 -------------EGTIEAIVKDDELVQSAKEGDKVSIVLDNTTFYPEGGGQVGDCGLIT 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + + L++ + +K A     H  I++ G +     +   +D + R   + NHSATHLLH 
Sbjct: 515 NENLVLEVLNTKKGANNSIKHIGIIKSGSISNGDKVKTLVDRETRMSAARNHSATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I  +L +   IMN
Sbjct: 575 ALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY D VRVVS+     G +S+ LCGGTH+++T ++ +  I+SE  
Sbjct: 635 IKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEGG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG+    +L  +D  +  +   LK  + N++ R+  + EE + L     
Sbjct: 690 VAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKELH 749

Query: 776 KRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +++++ +        ++  VN +++    +D   L+   D L+ K+ SG+++L  +
Sbjct: 750 DMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLANV 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K + ++  T+D+LD+  ++ ++ R  AK+ GG GG GRP+MAQ+G  + +K DQA+
Sbjct: 810 V-DDKVNFVVTATKDVLDKGIHSGNIVREVAKIAGGKGG-GRPNMAQAGASDVSKVDQAL 867

Query: 890 AGVASFLK 897
           +  +  +K
Sbjct: 868 SYASEVIK 875


>gi|313680711|ref|YP_004058450.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
 gi|313153426|gb|ADR37277.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977]
          Length = 895

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/926 (36%), Positives = 509/926 (54%), Gaps = 70/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK------ 55
              + IR  +L FF++ GH  LP  SLIP +DPTL+F  +GM P K  F G +       
Sbjct: 1   MTTAEIREKYLRFFEEKGHLRLPPFSLIPEDDPTLLFIVAGMAPLKPYFMGAKPVFPGHE 60

Query: 56  PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             ++ V T QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ +T
Sbjct: 61  GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAIAWAWEFVT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGP 168
             K   LD  RLY+TVY +D+EA+ +W+ + G+  ++I R   ++NFW          GP
Sbjct: 117 DPKWLGLDPDRLYVTVYKDDDEAYAIWRDVVGVPEERISRWDEDENFWPAGAISEGPNGP 176

Query: 169 CGPCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQN----KQERFILPKM 222
           CGPCSEIF+D+G     P     ++  G+R++EIWNLVF QF +      +     LP+ 
Sbjct: 177 CGPCSEIFYDRGPGFGSPDETGPNTGSGDRFVEIWNLVFTQFNRSGPIPGEGVLEPLPQK 236

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282
           +IDTGMGL R+A +LQ+  + Y  D FK LI    + +G+ Y+G   V+HRVI DH+R+ 
Sbjct: 237 NIDTGMGLYRVAAILQDVEDFYATDTFKPLIDLVAERSGVPYKGALSVSHRVIADHVRAV 296

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
              ++DG   +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +
Sbjct: 297 VAALSDGATFSNTGRGYVIRRLLRRAVRHGYLLGIKEPFLHELAPVVAELLGDYYPEMKE 356

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
               ++  +R+E+ RF +TL++G+  L+ +L+ L + ++L G+ AF+L+DT+G PLD+ +
Sbjct: 357 QLASVQPAIRAEEARFLETLEQGIRRLESLLAGLKEGDVLPGEEAFRLHDTYGFPLDLTE 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGY 460
           +I   RG+  +D   F +A+ EQ  RARA S   G            + E +GAT+F GY
Sbjct: 417 EIAAERGVK-VDREGFERAMREQVERARAASAFSGDVFAAAAPALERVFEDHGATEFTGY 475

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           + L                            V  I+Q    ++   +GQ  +VV D+TPF
Sbjct: 476 ERLED-----------------------EGKVLLILQGEAELDRLEAGQGGQVVLDRTPF 512

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+GD+G     G R ++   +K  +G+ +H   VE G L    ++   +D + R
Sbjct: 513 YAEGGGQVGDSGYLEWPGGRARVVTTKKSKQGLHLHEVEVEEGALAVGAAVRAVVDPERR 572

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NH+ATHLLH AL  +LG  V Q GS + PD LRFD TH+  ++  E++ +E  VN
Sbjct: 573 -CTEKNHTATHLLHAALRAVLGPQVRQAGSLVAPDRLRFDFTHAAALSPEEVRKVELLVN 631

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSAL 693
             +  + PV    M  E+A  +GA AL G KY D VRVV VE         +  V S  L
Sbjct: 632 RWVQADFPVSWTFMPLEEAKKAGAMALFGEKYADTVRVVKVEGSPDTAGILEAEVRSMEL 691

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV  TGEI    I +E ++ AG+RRIEA+TG+ A  +     ++  +LA  L  S 
Sbjct: 692 CGGCHVRRTGEIGYFVITAEEAVSAGVRRIEALTGEAAVRYARDLLDRDAALARALGTSL 751

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSK 807
             +  R+E++ +E ++L+  + K    L    L      +  +     +++   + +D  
Sbjct: 752 EGLPQRIEKLQQELKQLRRENEKLAADLARAQLGGGGAPAVREAGGWRYVAAAFAGLDVP 811

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866
            L+ V D + ++    ++++         ++++ V+ D + R   A  + R  A+   GG
Sbjct: 812 SLRQVADEILERYGVDLVVVGA-----GGALIVKVSPDAVQRGLAAGQVIRALAER-TGG 865

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGV 892
            GGG+PH+AQ GG +  KA  A+  V
Sbjct: 866 RGGGKPHLAQGGGFDVEKALAALDEV 891


>gi|78044932|ref|YP_359396.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123576855|sp|Q3AEN8|SYA_CARHZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|77997047|gb|ABB15946.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 874

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/906 (38%), Positives = 536/906 (59%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
              IR  FL+FF+  GH++LPS+SLIP NDP+L++T +GMVPFK  FTG   P  + VTT
Sbjct: 3   AREIREKFLKFFESKGHKILPSASLIPANDPSLLWTAAGMVPFKPYFTGAAVPEVRRVTT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+++VGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   + + 
Sbjct: 63  CQKCLRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFVTEHLGISKD 118

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LYIT+Y +D+EAF +W  + G+ A++I R+  + NFW +   GPCGPCSEI+ D G   
Sbjct: 119 KLYITIYLDDDEAFDIWHNVVGVPAERITRLGKDTNFWEIGV-GPCGPCSEIYVDLGPEK 177

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G + +  R++EIWNLVF+QF +  +     L +  IDTGMGLER+A+VLQ   
Sbjct: 178 GCGSPDCGVACDCGRFLEIWNLVFIQFFRDEQGNYTPLEQKGIDTGMGLERVASVLQGVP 237

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +N+D D+F+ ++  + Q+ G+KY  +    V  +VI DH R+ +F I DG LP+NEGRGY
Sbjct: 238 SNFDTDIFREIMDYAAQILGVKYGYDEKVDVALKVIADHTRAITFAITDGALPSNEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+RR++RRA+ + RLL   EP +  +   +  +MG  YPEL +      + ++ E+E+F 
Sbjct: 298 VIRRLLRRALRFGRLLDREEPFLHLVAAKVIEQMGDVYPELREKAEHTLKIIKLEEEKFR 357

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL++GL +L  ++  L +   + + G +AFKLYDT+G P+++ ++I   +G   +D   
Sbjct: 358 ETLNQGLSMLAELMERLTQEGKKEIPGHLAFKLYDTYGFPIELTKEIAEEKGFT-VDEEG 416

Query: 418 FNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F Q +EEQR RAR     +    T +     LKE+ G   F+GY+ L             
Sbjct: 417 FKQQMEEQRRRAREAREDVDYLSTRDAFLKQLKEELGEVTFVGYEKL------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       S+ + AI++ G+ VE   + ++ E++   TPFY E GGQ+ D G  +G
Sbjct: 464 ----------SESTEIIAIIKNGQKVESLAAEEEGEIITRVTPFYPEGGGQVADKGEILG 513

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG +L + DV+K      +H   V  G ++      L +D   R   + NH+ATHLLH A
Sbjct: 514 DGFKLSVLDVEKPLSDFILHKVKVVEGSVKVGDKATLMVDETTRMSTARNHTATHLLHKA 573

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +TP+ LRFD TH + ++  +L+ IE+ VN+ I +NL V       
Sbjct: 574 LKMVLGEHVNQAGSLVTPERLRFDFTHFEGVSDEDLRKIENIVNEAILRNLLVQIDYTTL 633

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A  +G  AL   KY D VRVV +     G  S+ LCGGTHVSSTG I    I+ ESSI
Sbjct: 634 DEARKAGVIALFDEKYGDLVRVVKI-----GEFSAELCGGTHVSSTGVIGFFKILGESSI 688

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQL 772
            AG+RRIEA+TG  A  ++   ++ L+      K +   +  ++    + + E+ R+++ 
Sbjct: 689 GAGVRRIEALTGLGALEYVRSLEDTLQKATEPYKCTFAELPEKISNTLKTLKEKDREIEA 748

Query: 773 IHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  K   +++     S  +I  V  +S II   D + L+   D ++  + + +++L G+ 
Sbjct: 749 LMQKIASIEVKSLLNSVREIKGVKVLSAIIDGADMEGLRKAYDVVKASLANYVVLLAGV- 807

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           K+ K + L  V ++L D+++A +L + +AK+ GGGGG GRP MAQ+GG N  K  +A+  
Sbjct: 808 KDGKVNFLAGVDKNLTDKYHAGELVKEAAKIAGGGGG-GRPDMAQAGGKNPEKVKEALQV 866

Query: 892 VASFLK 897
           + ++++
Sbjct: 867 IDAYVQ 872


>gi|282890190|ref|ZP_06298720.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499847|gb|EFB42136.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 876

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/909 (39%), Positives = 514/909 (56%), Gaps = 48/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F+++GH ++ SS + P +DP+L+FTN+GM  FK++F G+    Y   
Sbjct: 1   METQRIRRQFLNYFKEHGHRVISSSPVFPHDDPSLLFTNAGMNQFKDVFLGKSARDYHRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK  AIQ AWD+ T+ F  D
Sbjct: 61  TTSQKCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKAEAIQFAWDISTQVFGFD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            + ++ TV+ +DEEAF+LW +   + A KI R    DNFWSM E GPCGPCSE+++D+G 
Sbjct: 121 PQHIWPTVFRDDEEAFELWTRY--VPASKITRFGEKDNFWSMGEVGPCGPCSELYYDRGS 178

Query: 182 CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              P   P     GERY+E WNLVFMQF +        LP+ SIDTG G+ER+  +    
Sbjct: 179 KYGPANNPSEDVTGERYLEFWNLVFMQFNRLEDGSLSPLPRPSIDTGAGIERVVGLKMGV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGR 297
            + +  D+ + LI  +EQV    Y+  NI       VI DHLR  +F IADG+ P+N  R
Sbjct: 239 DSVFGTDVLRELIAQTEQVFNKSYDPTNIQTAPAFHVIADHLRCLAFAIADGVQPSNVDR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+++RRA+ Y R LG   P +  +LP L   MG  Y EL+QA+  I E L  E+E 
Sbjct: 299 GYVLRKVLRRAVRYGRSLGMDTPFLADILPRLVATMGEDYKELVQAQQRIAEILTVEEEA 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           F +TL RG  +L+ ++         ++GD AFKL DT+G PL+ ++ I     L  ID  
Sbjct: 359 FLRTLRRGGNILNQIIEGAQNTHHRISGDDAFKLKDTYGFPLEEIELIARDANL-VIDKE 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F     E + R+R          +  ++    + + AT F+GY+ L             
Sbjct: 418 RFELLENEAKERSRQVQKTTQQIASTNLFVDFVKTHAATTFLGYEQL------------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V  +V   + V + ++GQ   ++ DQTPFYAE GGQ+GDTG  + 
Sbjct: 465 ----------SARATVTGLVVDQQFVNQIIAGQDAMIILDQTPFYAEMGGQIGDTGTIVN 514

Query: 537 D-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G+  Q+T+     +G+  H   +  G L+   S+  ++D   R+++  NH+ATHLLH 
Sbjct: 515 HQGMSFQVTNTISPYQGVIAHVGTLTHGHLKVGDSVEASVDAPRRQKIENNHTATHLLHW 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + P  LRFD +H KP+T  EL  IE+ VN  I  NLPV T  + 
Sbjct: 575 ALHHVLGEHVKQAGSVVEPGRLRFDFSHHKPLTKQELNEIENLVNQRIRLNLPVKTYEIA 634

Query: 656 REDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            E+A  S       G KY  +VRVV  E       S  LCGGTH S+ G I L  I  E 
Sbjct: 635 YEEAQKSTDIKQFFGEKYGAKVRVVDAE------FSKELCGGTHTSALGNIGLFRIAKEG 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
           SI AG+RRIEA+TG+ A S     ++ + SLA  LK     +  R+E++ EE ++L    
Sbjct: 689 SIAAGVRRIEAVTGEDAESLSRHSEQFIDSLAELLKTQPQKLQERIEKLVEENKQLAQEM 748

Query: 774 --HAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVG 829
               K K++  V +L   +   ++ +  II++VD  + EL++ ++ LQ K+ SG+I L G
Sbjct: 749 KNLKKGKMEGMVTEL-SQQTEVIHHIPTIIAKVDVPAAELRNFLELLQAKMGSGVIAL-G 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +++E K  ++I V++DL+ +  NA  L +  A ++  G GGG+P+MAQ+GG    K  +A
Sbjct: 807 VTEEDKCHLIIRVSDDLVAKGINASQLIKTLAPMIE-GTGGGKPNMAQAGGKAPQKLTEA 865

Query: 889 IAGVASFLK 897
           +A     L+
Sbjct: 866 LAKFRELLQ 874


>gi|223044141|ref|ZP_03614180.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442535|gb|EEE48641.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 876

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/914 (37%), Positives = 509/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G+      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGDEYGQNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E V+G KY       V  +VI DH+R+ +F IADG 
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++    KD   + G+ AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               SI+  ++  GE VE   +G+ V      TPFYA +GGQ+ 
Sbjct: 467 -------------------QSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +++V K   G  +H  IV+ G       +  +++ ++RR +  NHSA
Sbjct: 508 DEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A + GA AL G KY D VRVV++        S  LCGG HVS+T EI L  
Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVSNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV     VVG+V ++ EE +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I D+  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 SLLKQLEQRNKEITSLKMGNVEDQVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +A+  +  ++K
Sbjct: 861 NITEALHFIKDYIK 874


>gi|15644148|ref|NP_229197.1| alanyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|6707752|sp|Q9X1B6|SYA_THEMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4981959|gb|AAD36467.1|AE001792_7 alanyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 863

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/903 (40%), Positives = 542/903 (60%), Gaps = 50/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   +I+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKRILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEGCTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I+  E++TG+ Y  +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIIKRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++   GK   ++ + AF+LYDT+GLPL++  +I   +G+  +D+
Sbjct: 359 NRFLKTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++RA  +G         +     K   T+F GY+ L            
Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  + +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLVARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +  V + +EG+ VH   +  G LR    ++L +D + R     NH+ATHLLH 
Sbjct: 510 WRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVILRVDKKRREATMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D VRVV          S  LCGGTHV +TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVVRVVE-----VPGVSKELCGGTHVKNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           + ++  + E ++  ++ D V     +   V++K L  + D + KK   GI++L     E 
Sbjct: 745 QGRI--SEERIAMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFEN 801

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K S+++ V+E+LL +++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +  
Sbjct: 802 KVSLVVKVSENLLGKYDASSIARNIAKEL-GGNGGGRKNFAQAGGRHPERIKDVLERLEE 860

Query: 895 FLK 897
           FL+
Sbjct: 861 FLR 863


>gi|310658795|ref|YP_003936516.1| alanyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825573|emb|CBH21611.1| alanyl-tRNA synthetase [Clostridium sticklandii]
          Length = 882

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/912 (37%), Positives = 529/912 (58%), Gaps = 50/912 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L FF+   H    S SL+P ND +L+  N+GM P KN F G E P  
Sbjct: 1   MKNLGVNEIREKYLSFFRSKDHYSRSSFSLVPENDKSLLLINAGMAPMKNYFMGLETPPN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + + T QKCVR G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +TK+ 
Sbjct: 61  KRMATCQKCVRTG----DIENVGKTARHATFFEMLGNFSFGDYFKKEAIAWAWEFVTKDL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177
           +L+   L++TVY ED+EAF +W+K   +  ++I+R+   DNFW +   TGPCGPCSEI+ 
Sbjct: 117 ELNPDDLWVTVYLEDDEAFDIWEKDINVPKERIVRLGKEDNFWEIGTGTGPCGPCSEIYI 176

Query: 178 DQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           D+G+      P      + +R++E WNLVF QF +        LP  +IDTGMGLERMA 
Sbjct: 177 DRGKEFGCSDPDCKPGCDCDRFLEFWNLVFTQFNKDEDGNYNPLPNPNIDTGMGLERMAC 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPA 293
           ++Q   + +DID  K +     +++G +Y       V+ R+I DH R+ +FLI+DG+LP+
Sbjct: 237 IMQGVDSIFDIDTMKSIRDNVCELSGKEYGKSTETDVSIRLITDHSRAVTFLISDGVLPS 296

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRR++RRA  + RLLG     ++ L+  +    G AYP+L++ K  I++ L  
Sbjct: 297 NEGRGYVLRRLIRRAARHGRLLGIKNNFLVKLMETVIENYGEAYPDLVEKKEYIKKILTV 356

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F +TLD+G+V+L   +  +     ++L+G+ AF+LYDT+G P+++  +I+   GL 
Sbjct: 357 EEEKFSETLDQGMVILKEYMDKIKSESKDVLSGEDAFRLYDTYGFPIELTLEIVEEYGLK 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +++Q+ RAR+     G    ++   +L       +FIGY+ L        
Sbjct: 417 -VDEDGFKAEMQKQKERARSARTDKGVEGWKETADTLTFSIEKNEFIGYNELE------- 468

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            S+ +K I+   + ++    GQ  E+VF++TPFYAE+GGQ+ D 
Sbjct: 469 ----------------ASAQIKDIIFDNQKIDILSEGQAGELVFEKTPFYAESGGQVADK 512

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +    ++ DVQK   G+F+H   V  G  +      L +D + R+    NH+ TH
Sbjct: 513 GIVKSENFVAEVKDVQKSHNGLFIHRVEVVSGEAKLSDKCELVVDEKLRKSTQRNHTCTH 572

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG+H+ Q GS ++   LRFD TH +PITS +L  IE+ VN+ I +  PV  
Sbjct: 573 LLHKALRQVLGAHIHQAGSLVSDTRLRFDFTHFEPITSEQLSQIENMVNEAIFKAYPVKV 632

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +MN E+A  SGA AL   KY D VRVVSV     G  S+ LCGGTHVS++ +I +  I+
Sbjct: 633 EVMNIEEAKKSGAMALFDEKYEDNVRVVSV-----GEFSTELCGGTHVSNSSDIGMFKIL 687

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I +G+RRIEAITG     +L+ ++  L  + S +K ++ N+V ++ +  E+Y+  Q
Sbjct: 688 SESGIASGVRRIEAITGSNVYQYLLEKEAVLDEIKSLVKSNEDNLVIKLSQTIEDYKTAQ 747

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              +K K ++    ++        I  + ++     ++D + L++V + +  KI++ +++
Sbjct: 748 KELSKLKSEIAKNQINEILEGAKDIDGIKYVYSSFEDLDDETLRNVAENVIDKIENSVVL 807

Query: 827 LVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L     E K S + +V++  L    +A    +  + + GGGGG G+P+MAQ+GG + +K 
Sbjct: 808 LSSYF-ENKISFVCMVSKGALQKGVHAGKFIKEVSSLTGGGGG-GKPNMAQAGGKDISKL 865

Query: 886 DQAIAGVASFLK 897
            +A+    + LK
Sbjct: 866 GEAMKQSETILK 877


>gi|237739614|ref|ZP_04570095.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423222|gb|EEO38269.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 867

 Score =  875 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/909 (36%), Positives = 506/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+V+FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEVSFKLYDTYGFPYELTEEIAEERGVT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYEKTEDEATLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H   +E+G      +  L ++   R   + NH+ATHLL
Sbjct: 504 IYSDNFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + PD LRFD +H + +T+ +L  IE+ VN+ I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY + VRVV     D    S+ LCGGTH+ +  +I L  IVSE
Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVV-----DVSGFSTELCGGTHIDNIAKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  +  +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLAEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDAEKA 737

Query: 774 HAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++             +I     +     +  + +L++++D ++   +  I++L 
Sbjct: 738 LESLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854

Query: 889 IAGVASFLK 897
              + + ++
Sbjct: 855 FKEIRAIIE 863


>gi|154497721|ref|ZP_02036099.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC
           29799]
 gi|150273219|gb|EDN00364.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC
           29799]
          Length = 890

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/914 (36%), Positives = 506/914 (55%), Gaps = 54/914 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  FL+FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+++P    VTT
Sbjct: 8   LNELREMFLKFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPCHRVTT 67

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R G    D++N+G T RH T+FEMLGNFSFG YFK+ AI  AW+ LT  +   LD
Sbjct: 68  CQKCIRTG----DIENIGHTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSPEWVGLD 123

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY +V+        D+EAF++W +  G+ A++I +    DNFW     GPCGPCSEI
Sbjct: 124 PERLYPSVFAGNETTPADDEAFRIWHEEIGIPAERIFKFGKEDNFWEHGS-GPCGPCSEI 182

Query: 176 FFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           ++D+GE    G PG +   + +RYIE+WN+VF QF    +     L + +IDTGMGLER+
Sbjct: 183 YYDRGERWGCGKPGCTVGCDCDRYIEVWNVVFSQFNNDGENHYTELKQKNIDTGMGLERL 242

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A V Q+  + +D+D   ++     ++T   Y       V+ RVI DH+RS++F+I DG+L
Sbjct: 243 ACVCQDVASLFDVDTVMNITNKVSEITHAHYGETAAKDVSLRVITDHIRSATFMICDGVL 302

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRR++RRA  + +LLG  EP +  +   +  E    YPEL + +  I + +
Sbjct: 303 PSNEGRGYVLRRLLRRAARHGKLLGVNEPFLYEVCDTVIHENEGHYPELRERQDYITKVI 362

Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R+E+E F +T+D GL + + +LS      +++ +G  AFKLYDT+G P+D+  +++  +G
Sbjct: 363 RTEEENFARTIDGGLKIFNDMLSGHKEKGEKVFSGADAFKLYDTYGFPIDLTIEMVQEQG 422

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F   +EEQ+ RAR     LG      +     +    TQF+GYD        
Sbjct: 423 MT-VDQEGFKVLMEEQKVRARKAREALGDLGWAGV--EFGKDVPETQFVGYDHTSIDD-- 477

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V A+V + E  EE + G +  VV D+TPFYAE GGQ+ 
Sbjct: 478 --------------------AKVVALVVENEQAEELMPGVEAIVVLDKTPFYAEMGGQVA 517

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G       + Q+TDVQK   G ++H   +  G+++   ++  +ID + R+ +   HSA
Sbjct: 518 DHGVITMGDAQFQVTDVQKNKGGKYMHTGKLTGGVIKLGDTVSASIDVKRRKAIMRAHSA 577

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL T+LG HV Q GS +  D LRFD TH   +T+ EL  +   VN+ + +   V
Sbjct: 578 THLLDKALRTVLGDHVQQAGSLVEEDRLRFDFTHFSAMTAEELSQVSAMVNEAVLEGYDV 637

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T ++  E+A   GA AL G KY D VRVV +    G  +S   CGGTH+ +T ++ + +
Sbjct: 638 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDM----GEGYSVEFCGGTHLDNTAKVGVFH 693

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I SE S+ +G+RRIEA TG ++   +    +KL   A+ LK     +  + E+   E R+
Sbjct: 694 IESEFSVASGVRRIEATTGAQSLKIMNQNQQKLFEAAAVLKAKPSELREKAEQTIAELRE 753

Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+ +  K K +    +     +  H + D+  ++  +   D+ +L+ + D L+ K  + +
Sbjct: 754 LRHMVEKFKAKEAAGETERFLMGGHTVGDLKVLTATLPNADAAKLRQMGDMLRDKQPNVV 813

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            +L  ++  K    ++   E +     A D+ +     + GG GGG+P  A  GG +  K
Sbjct: 814 AVLSAVNDGKITFQVVCGKEAVAKGIKAGDIIKNV-TAICGGKGGGKPDSAMGGGFDVLK 872

Query: 885 ADQAIAGVASFLKK 898
            D A+A V   + +
Sbjct: 873 LDDALAKVDDLVAE 886


>gi|91762223|ref|ZP_01264188.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718025|gb|EAS84675.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 889

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/912 (43%), Positives = 583/912 (63%), Gaps = 44/912 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK  Y   
Sbjct: 4   KTLNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYVRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+TKEF +D
Sbjct: 64  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGID 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY+TVY +DEEAF  WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 KNRLYVTVYHDDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLER+A +LQ  
Sbjct: 184 HLEGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D FK LI ++     +K   +N  + RVI DHLR+SSFL+A+G+LP+NEGRGYV
Sbjct: 244 HDNYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRR M ++ LLG  +P+  ++   L  EM + YPEL +A+ LI+ETL++E+E+F  
Sbjct: 304 LRRIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLV 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            LDRG+ +L+  L  + K  IL G+VAFKLYDT G PLD+ +DIL  + +  +D   F+ 
Sbjct: 364 LLDRGIKILNEELEKVEK--ILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDL 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++E +  A+ +  G G  + ++IWF +K++ GAT F+GY                    
Sbjct: 421 LMKESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGYST------------------ 462

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                +    +V  I++  + V++     +  ++ +QTPFY E+GGQ+ DTG    +   
Sbjct: 463 -----DKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEIFE 517

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +++DVQKK   +F H+  V++G ++ + S+ L ID Q R  +   HSATHLLH AL  +
Sbjct: 518 FEVSDVQKKLGDLFAHYGKVKKGSVKLKDSVELKIDTQRRNNIRAYHSATHLLHEALRRV 577

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +  D LRFD +H KPI+  E+K IE  VN II +   V TRIM  ++A+
Sbjct: 578 LGEHVTQKGSLVQSDRLRFDFSHMKPISDEEMKKIEHYVNSIIEKKSEVKTRIMTPKEAV 637

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
            +GA AL G KY D VRV+S+  E+G   S+ LCGGTHV +T +I    I+S+SSI AG+
Sbjct: 638 ENGALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGV 697

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--------WEE---YRK 769
           RR+EA+   +    L  ++ +        +     +  ++ ++         ++    + 
Sbjct: 698 RRVEALRDVQLTDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKD 757

Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD--VNFMSHIIS---EVDSKELKSVMDALQKKIQSGI 824
           L     +  +   ++D   +KI D  +N          ++  K+L+ ++D  +K+I  G+
Sbjct: 758 LNRQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIMDLPFKDLRKLIDEGKKEIGEGL 817

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++  I  + K  + + VT+ L ++F+AV + R  ++V+GG GGGGR   AQ+GG   +K
Sbjct: 818 VIIYAI-NDNKVGLAVGVTKTLEEKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTLPDK 876

Query: 885 ADQAIAGVASFL 896
            +++   +   +
Sbjct: 877 IEESFENIKKLI 888


>gi|73662452|ref|YP_301233.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|83305860|sp|Q49Y56|SYA_STAS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72494967|dbj|BAE18288.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 876

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/914 (36%), Positives = 524/914 (57%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  F+++F + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQNFIDYFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++ + LY+T++ ED+EA+++W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPKLLYVTIHPEDKEAYRIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ER++E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEDFGQDDPAEEMYPGGENERFLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E+V+G  Y  N+   V  +VI DH+R+ +F IADG 
Sbjct: 234 MASLAQNVRTNYETDLFMPIIHEVEKVSGKTYLENDNYDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYRLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ +++        ++G  AFKLYDT+G P+++ ++I     
Sbjct: 354 IKSEEERFHETLEEGLAILNNLVAQAKTSTHEISGKDAFKLYDTYGFPVELTEEIATQEN 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ ID+ +F + +++QR RAR       S   +     LK+    + F+GYD++  +   
Sbjct: 414 LS-IDMQTFEEEMQQQRDRARQARQNSQSMQVQSEV--LKKITTDSTFVGYDVMDKA--- 467

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S++  I+Q GE+VE A +G+ +  +  +TPFYA +GGQ+ 
Sbjct: 468 --------------------SVITDIIQNGELVESAEAGETIYFILRETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +   + +T+V K   G  +H   ++ G ++    +  +++++ RR +  NHSA
Sbjct: 508 DQGTISNENFEIAVTEVTKAPNGQNLHKGEIQFGTVKKNAEVSASVNHKERRSIKKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  E+ ++E  VN+ I  ++ V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEEIDTVERRVNEEIWNSIEV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY + VRVV++        S  LCGG HV++T EI L  
Sbjct: 628 DIQEMPISEAKQLGAMALFGEKYGEIVRVVNMAP-----FSIELCGGIHVNNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     +  ++ S +KV   + V+ ++  + +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLETIQSQFNAVKSQVKVKSDDQVLEKIVHMQDEEK 742

Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSG 823
           +L  QL    +++         +++ ++N +  + +EVD   +K ++  MD  + K+Q  
Sbjct: 743 ELTKQLEQKNKEVTSLKMGDITNQVEEINGLKVLATEVDVPNAKAIRETMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L+  + + K S++  V + L D+  A D+ +  A V+ GG GGGRP MAQ GG    
Sbjct: 803 VIVLIS-NIDGKVSLVATVPKALTDKVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPK 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NITESLRFIKDYIK 874


>gi|289523056|ref|ZP_06439910.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503599|gb|EFD24763.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 880

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/908 (37%), Positives = 525/908 (57%), Gaps = 48/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  FL +F++  H+  PS SLIP +DPTL+FT +GMVPFK  F G +KP     T
Sbjct: 5   SGKELRELFLSYFEQKEHKRFPSFSLIP-DDPTLLFTIAGMVPFKPYFLGLKKPEVLRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFKERAI  AW+ LTK   LD 
Sbjct: 64  TSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKERAIPWAWEFLTKVIGLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+Y T+Y +D+EAF++W K+ GL   KI+R+   DNFW+    GPCGPCSE+ +DQG  
Sbjct: 120 ERMYATIYLDDDEAFEIWNKVVGLPESKIVRMGEKDNFWAAGPIGPCGPCSELIYDQGPA 179

Query: 183 IPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P      + +RY+E+WNLVFMQ+ +  +     LPK +IDTGMGLER+A+++Q  
Sbjct: 180 FSCGKPDCFVGCDCDRYLEVWNLVFMQYNRDEEGNLTPLPKKNIDTGMGLERLASIVQGA 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            ++++ DLF  LI+   +++G++Y  +       RVI DHLR+ +F+IADG+LP+NEGRG
Sbjct: 240 RSDFETDLFLPLIEKVSRLSGVEYAADKRFDTAMRVIADHLRALAFMIADGVLPSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  Y R+LG   P ++ L+P L   M   Y EL++ +  IE  +  E++RF
Sbjct: 300 YVLRRLLRRASRYGRVLGLDRPFLIELMPELLEIMADHYKELVEYRSTIESVINLEEKRF 359

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TLD+G  LL+  +S +      +L+G+ AF LYDT+G PL++ ++I   +G+  +D  
Sbjct: 360 SRTLDQGSALLEEEISRVIRSGSSVLSGETAFTLYDTYGFPLELTEEICQEQGIE-VDRE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + +E QR  AR  S  L S   +++  +L  K+G T+F+GY+               
Sbjct: 419 EFERCMERQREMARTASKQLASMAKKEVHSTLLAKFGPTKFVGYES-------------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                    +   S V AI++    VEEA  G++VE++  +TPFYAE GGQ+GD G    
Sbjct: 465 ---------DEAESKVLAILKDSREVEEAHEGEEVEILLAETPFYAEKGGQVGDKGWIET 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
              +L++ D     + +  H   V+ G +  +      +D   R  +  +H++TH++H A
Sbjct: 516 STGKLEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDLSRRNAIRRHHTSTHIIHEA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L+ +LG H+ Q GS ++P+ LRFD TH   I+  ++  IE   N++I  N+ +     + 
Sbjct: 576 LTRVLGPHIRQAGSYVSPNYLRFDFTHFDAISRDDIVKIEQIANEVIQANIKLNIFETSM 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA A    KY DRVRV+ +       + + LCGG HV++TG+I L  IV E SI
Sbjct: 636 EEAKKIGAKAFFDEKYGDRVRVIQIPG-----YCAELCGGLHVNATGDIGLTKIVKEESI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRI A+ G  A SH     + ++ L     V  G++  +  ++++E + L+    +
Sbjct: 691 GSGLRRITALAGMAAVSHYQELFDLVEDLTLISGVEAGSLKEKFTDVFQEIKNLKTELQR 750

Query: 777 RKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             L+L +            +     ++    ++D+  L+ V D L+K ++  +++L   S
Sbjct: 751 SNLKLALSQCDKILSQRQIVNGFTLLTGKFEDLDADILRQVGDHLKKGLKKVLLVLGS-S 809

Query: 832 KEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E K  ++ +  ED + D  +A       AK++ GG GGGRP++AQ+GG    K + A+ 
Sbjct: 810 FEGKVVLVAMADEDAVRDGIHAGKFINRVAKIVDGG-GGGRPNVAQAGGKKVEKLEDALN 868

Query: 891 GVASFLKK 898
            V   L +
Sbjct: 869 AVPRILTE 876


>gi|314933784|ref|ZP_07841149.1| alanine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653934|gb|EFS17691.1| alanine--tRNA ligase [Staphylococcus caprae C87]
          Length = 876

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/914 (37%), Positives = 510/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED  A+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G+      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGDEYGQNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           MA++ Q    NY+ DLF  +I   E V+G KY       V  +VI DH+R+ +F IADG 
Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+ ++    KD   + G+ AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L+ +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV--LKNITDDSTFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               SI+  ++  GE VE   +G+ V      TPFYA +GGQ+ 
Sbjct: 467 -------------------QSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +++V K   G  +H  IV+ G       +  +++ ++RR +  NHSA
Sbjct: 508 DEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  D LRFD +H  P+T  EL  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGYHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M  ++A + GA AL G KY+D VRVV++        S  LCGG HVS+T EI L  
Sbjct: 628 RIQEMGIDEAKSMGAMALFGEKYSDIVRVVNMAP-----FSIELCGGIHVSNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L     K  ++ + +KV     VVG+V ++ EE +
Sbjct: 683 IVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I D+  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 SLLKQLEQRNKEITSLKMGNVEDQVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L   + + K S++  V + L D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +A+  +  ++K
Sbjct: 861 NITEALHFLKDYIK 874


>gi|194017184|ref|ZP_03055796.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194011052|gb|EDW20622.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 878

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/915 (37%), Positives = 512/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + +R  FL+FF++ GH + PS+SL+P +DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKTLTSAQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  +
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +TV+ EDEEA+ LW+   G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPNLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGDDMNDPELYPGGENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A E ++G  Y          +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YP++   +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+          ++G+  FKLYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNEGLAILSEVIKKERDKGSTQISGEDVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F   +E+QR RAR     +GS   +    +L +    + F+GY+ L     
Sbjct: 414 NMT-VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENL----- 465

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++Q GEIV EA  G  V+++ D+TPFYAE+GGQ+
Sbjct: 466 ------------------TADAHIVELLQNGEIVTEAHEGDTVQILLDETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G      + + I DV+K   G  VH  +V  G  +  + +   ++   R+ +  NH+
Sbjct: 508 ADKGTLKSAEVNIDIKDVKKAPNGQHVHEGVVVSGTAKKGLEVTAEVESALRKGIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS +  + LRFD +H   +T  EL  IE  VN+ I + + 
Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGIS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VAIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AG RRIEA+TG+ A   L  Q   L+  AS LK +  +V  R+  +  + +
Sbjct: 683 KIASESGIGAGTRRIEAVTGKGAYEELNDQLTILEQAASELKSNTKDVPKRIASLQADLK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++Q  +     +L+  +         +I  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EVQRENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L G  +  K ++   VT+D++++  +A  L + +A++ GGGGG GRP MAQ+GG   
Sbjct: 803 VIVL-GAVQNGKVNISAGVTKDVIEKGLHAGKLVKQAAEICGGGGG-GRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+A V   +K
Sbjct: 861 EKLEEALAIVEESVK 875


>gi|86608988|ref|YP_477750.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123751690|sp|Q2JLC4|SYA_SYNJB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86557530|gb|ABD02487.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 884

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/911 (39%), Positives = 521/911 (57%), Gaps = 54/911 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + ++IR TFL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P Y  VT
Sbjct: 6   SGAAIRQTFLDFYAQRGHQVLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRDPEYPRVT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F L  
Sbjct: 65  TAQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTEVFGLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ EDEEAF LW+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 121 ERLVVSVFREDEEAFALWRDEIGIPAHRIQRMGEADNFWAAGPTGPCGPCSEIYYDFKPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           +        E+  R++EI+NLVFM+  + ++     L K +IDTG+GLER+A VLQ   N
Sbjct: 181 LGDER-IDLEDDSRFLEIYNLVFMELNRDSEGHLMPLAKQNIDTGLGLERLAQVLQGVPN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ +  + G+ Y   N    ++ +VI DH R+   LIADG+LP+N  RGY
Sbjct: 240 NYETDLIFPIIQTAAGIAGLNYSKANPEQQISLKVIGDHARAVMHLIADGVLPSNVDRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG  EP  + ++        +AYP++ + + LI+  L+ E+E+F 
Sbjct: 300 VLRRLIRRMVRHGRLLGIGEPFTIPVIETAIQLAEAAYPQVRERETLIKTELQREEEQFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKD-------EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           KTL+RG  LL  + + +          + ++G  AFKL+DT+G PL++ Q+I    G + 
Sbjct: 360 KTLERGERLLLDLFTAVESSRRDSSSPKQISGADAFKLFDTYGFPLELTQEIAQEHGFS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F Q +E+QR RARA    +   T +     L +    T+F+GY            
Sbjct: 419 VDLEGFEQEMEKQRQRARAAHQTIDL-TAQGSLDELADFLSQTEFLGYS----------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        +    +V+A++ +G+ V +  +GQ V+VV D+TPFYAEAGGQ+GD G
Sbjct: 467 ------------QSSARGVVEALLVEGKSVPQVEAGQAVQVVLDRTPFYAEAGGQIGDRG 514

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GDG+ ++I DVQK+ + +FVH   VERGILR    +   ID   RR+   +H+ATHL
Sbjct: 515 YLSGDGLLVRIEDVQKQGD-LFVHFGRVERGILRVGDPVQAQIDLACRRRAQAHHTATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  I+   + Q GS +  D LRFD T S+P+T  EL+ IE+ VN  IA+       
Sbjct: 574 LQAALKRIVDPSIGQAGSLVAFDRLRFDFTLSRPVTPEELEQIENLVNTWIAEAHAAQVA 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM   +A A GA A+ G KY   VRV+          S  LCGGTHV++T EI L  I++
Sbjct: 634 IMPLAEAKARGAVAMFGEKYGAEVRVIDFPG-----VSMELCGGTHVNNTAEIGLFKIIA 688

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AGIRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q 
Sbjct: 689 ETGVAAGIRRIEAVAGPAVLEYLNERDRVVRELSAQFKAKPQELPERVAALQAELKAAQK 748

Query: 773 IHAKRKLQLN---VEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + + QL     E L      +AD+  +   +     + LK+  + L  K+  G ++L
Sbjct: 749 ELEEVRSQLALLQAEGLLAQAVAVADLKVLVAELGSTTPEALKTAAEHLLHKLGEGAVVL 808

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             + +  K S++   +  +      A       AK+ GGGGG GRP++AQ+GG    K  
Sbjct: 809 GSVPEAGKVSLVAAFSPAVQQLGLKAGSFIGEIAKLTGGGGG-GRPNLAQAGGKQPEKLA 867

Query: 887 QAIAGVASFLK 897
           +A+      L+
Sbjct: 868 EALQVARERLQ 878


>gi|281412824|ref|YP_003346903.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373927|gb|ADA67489.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 863

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/902 (40%), Positives = 537/902 (59%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I   E++TG+ Y  +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++   GK   ++ + AF+LYDT+GLPL++  +I   +G+  +D+
Sbjct: 359 NRFLKTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++RA  +G         +     K   T+F GY+ L            
Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  I +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLIARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +  V + +EG+ VH   +  G LR    +VL +D + R     NH+ATHLLH 
Sbjct: 510 WRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++S+E++ +ED VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSSEIEQVEDLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D VRVV          S  LCGGTHV +TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVVRVVE-----VPGVSKELCGGTHVKNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++   +  +   +   V     +   V++K L  + D + KK   GI++L     E K
Sbjct: 745 QGRISEKMITMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +++ V+E+LLDR++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +  F
Sbjct: 803 VFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERLEEF 861

Query: 896 LK 897
           L+
Sbjct: 862 LR 863


>gi|303238701|ref|ZP_07325234.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302593820|gb|EFL63535.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 879

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/906 (36%), Positives = 536/906 (59%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+  GH  LPS  L+P NDP+L+  NSGM P K  FTG+E+P  + V T
Sbjct: 6   LNELRERYLKFFEGKGHLRLPSFPLVPQNDPSLLLINSGMAPLKPYFTGKEEPPRRRVAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T++  +   
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEDLKMPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++T+Y++D+EAF++W K  GL  ++I+R+   DNFW    TGPCGPCSEI++D+G   
Sbjct: 122 KLWVTIYEDDDEAFEIWNKDVGLPPERIVRMGKKDNFWEHG-TGPCGPCSEIYYDRGVER 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      E +R+IE WN VF QF +  +     LP  +IDTGMGLER+A + Q+  
Sbjct: 181 GCGKPDCKVGCECDRFIEFWNNVFTQFNKDEEGNYTKLPNPNIDTGMGLERLACISQDVE 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  +++++   +   +KY  ++   ++ RVI DH+RS++ +++DG++P+NEGRGY
Sbjct: 241 NLFEVDTVRNVLEYVCKTADVKYHESDKTDISIRVITDHIRSTTMMVSDGVIPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +P +  +   +  E   AYPEL + +  I++ +R E+E+F 
Sbjct: 301 VLRRLLRRAARHGKLLGINKPFLYDISMIVINESREAYPELEEKREYIQKVIRIEEEKFD 360

Query: 360 KTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+GL++L+  +        E + G +A++L+ T+G P+D+ ++I    GLA ID   
Sbjct: 361 LTIDQGLIILNKYIEETKAKNAETITGTMAYELHSTYGFPIDLTREISEENGLA-IDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   + E R   R   L   S       +S  +K   +QF+GY                 
Sbjct: 420 FKAKMLEHRIIGREDYLSKQSSAWSDDIYSSLDKNLKSQFVGYSE--------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   N   + V  I++  E+V+ A  G+ V V+ D+TPFYA +GGQ+GD G   G+
Sbjct: 465 --------NVAEAKVLYIIKNDEVVQTAKEGESVTVILDKTPFYAASGGQVGDEGYIEGN 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            +R++I D +K  +G ++H  +VE+G L T   +  +ID + R  ++ NH+ THLL  AL
Sbjct: 517 DVRIRIEDCKKTDDGKYLHTGVVEKGTLETGADVKASIDIRRRTSIARNHTTTHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+HV Q GS + PD LRFD  H   +TS E+  +E  VN+ I ++L V  + M  +
Sbjct: 577 RNVLGTHVHQAGSLVEPDRLRFDFAHFSAMTSEEIAKVESEVNEKILESLIVDVKEMPID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA AL G KY + VRVV +       +S   CGGTH+ ST +   + I+SES + 
Sbjct: 637 EAKKLGATALFGEKYGNIVRVVKI-----ADYSMEFCGGTHLKSTSQAGFVKILSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ A ++L  +++ +  ++S LK S  + V R+E +  E +  Q    + 
Sbjct: 692 AGVRRIEALTGEAALAYLHEREKLINEVSSALKSSPQDSVKRIEAMAIELKSAQKEIEQL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L    L     +  ++  V  +     ++D + L++  D ++ K+ SG+++L G   
Sbjct: 752 RSKLVSGSLDEVFSNAVEVKGVKVVKARFDQLDMEALRNTGDTIRNKMGSGVVVL-GSGY 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S +++ T+D++ +  ++ ++ +  AK+ GGGGG GRP MAQ+GG + +K D+AI  
Sbjct: 811 EGKVSFVVMATKDVVAKGIHSGNIIKEVAKIAGGGGG-GRPDMAQAGGKDLSKIDEAIDY 869

Query: 892 VASFLK 897
               ++
Sbjct: 870 SIKVIE 875


>gi|269925210|ref|YP_003321833.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788870|gb|ACZ41011.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 879

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/910 (39%), Positives = 523/910 (57%), Gaps = 48/910 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR+ FLEFF+  GH ++PSSSL+P  DPTL+FTNSGMV FK++F G+E   Y  
Sbjct: 1   MKS-SEIRSKFLEFFEARGHTVVPSSSLVPAKDPTLLFTNSGMVQFKDVFLGRESRSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG + RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L
Sbjct: 60  ATTAQKCMRAGGKHNDLENVGPSARHLTFFEMLGNFSFGDYFKREAIGYAWEFVTQVLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  RL+ TV+  D+EA  LW++++GL   +IIR+   DNFW MA+ GPCGP SEIF+D+G
Sbjct: 120 EPSRLWATVHYTDDEAASLWQEVAGLPESRIIRMGDEDNFWQMADVGPCGPNSEIFYDRG 179

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G P  +   +  R+ E WNLVFMQ+ Q     R  LPK +IDTG+GLER + ++Q
Sbjct: 180 PEKGCGDPNCTPAHDCGRFWEFWNLVFMQYYQDESGNRTPLPKKNIDTGLGLERTSAIMQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              + ++ DLF  ++   +++ G   E     IV +RVI DH RS +FLIADG+ P NEG
Sbjct: 240 GVDSIFETDLFVPIMDEVQRIAGHSDEDRRREIVAYRVIADHSRSLAFLIADGVTPGNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           R YVLRRI+RRA+ + R +G     +      +   MG  Y EL      I++  R+E+E
Sbjct: 300 RSYVLRRIIRRAIRFGRRIGIEGHFLSDTARVVVDIMGHHYTELEDQWSFIDKVTRAEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F +TL RG+  LD ++  L     + + G+ AF+LYDT+G PLD+  ++   RG + +D
Sbjct: 360 HFSRTLARGVAQLDDLIDKLSASGQKEIPGEDAFRLYDTYGFPLDLTLELARDRGFS-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F +A+E QR+++RA S             S       TQF GY  L           
Sbjct: 419 TEGFKRAMERQRAQSRAASTFTAKMPAAYAALS----GEPTQFTGYTTLED--------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +  V AI+++GE+V++   GQ+ E++ D+TPFYAEAGGQ+GDTG  
Sbjct: 466 --------------TGRVMAIIREGELVDKVEHGQEAEILLDRTPFYAEAGGQVGDTGVI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G      + D Q+   G  +H   V  G +    ++ L +D + R+ +  NH+ATH+LH
Sbjct: 512 TGPEGDFHVLDTQRPVNGYILHRGRVLHGSISVGQNVDLVVDARRRQDIMRNHTATHILH 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             L  +LG H  Q GS + PD LRFD TH   ++  E   IE  +ND+   +  V  +  
Sbjct: 572 KTLRDVLGPHARQAGSLVAPDRLRFDFTHPSQLSDEEFFEIERIINDVSQDDRKVYAQEK 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
              +AIASGA AL G KY D VRVVS+E      + S LCGGTHV  TGEI  +YI SE 
Sbjct: 632 PYTEAIASGAMALFGEKYGDIVRVVSIE-----DYGSELCGGTHVHHTGEIGPIYITSEG 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772
           SI +G+RR+EA+TG+ A  +   + E L+ L + LKV    +  +V  + E  R+   Q+
Sbjct: 687 SIASGVRRVEAVTGRGAIKYARERMELLERLGAKLKVPTSEIERQVALLQERLREQERQI 746

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829
              +R+L     D     +  V+    ++++        +  + D L+ +++SG+++ VG
Sbjct: 747 EQLRRQLAAGEIDQMLRNVRQVDGTKLLVAQTSLDSREAMSDLADRLRDRLRSGVVV-VG 805

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K S++ VVT DL+ +  +A  L +  + ++GGGGG GRP  A++GG    K ++A
Sbjct: 806 SVLQGKPSIVAVVTPDLVQKGVHAGKLVKEISALVGGGGG-GRPDRAEAGGRFPEKLEEA 864

Query: 889 IAGVASFLKK 898
           +  V   L +
Sbjct: 865 LGSVDEVLAR 874


>gi|330684847|gb|EGG96537.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 876

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 511/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDVEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGADFGKDDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I   EQV+G  Y    +  V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKTYLQNIDQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVAEIMEPYYPNVKEKSEFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+G +S   + ++ +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLAILNGFISQAKEGNQEINGKDAFKLYDTYGFPIELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK     + F+GY+        
Sbjct: 414 LT-VDMTTFEAEMQQQRDRARQARQNSQSMQVQSEV--LKNITTESHFVGYNTTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++Q GE V++A +G+ +  +   TPFYA +GGQ+ 
Sbjct: 467 -------------------QTELIHLIQNGEEVDKADTGETIYFMLKDTPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +T+V K   G  +H   ++ G +     +  +++   RR +  NHSA
Sbjct: 508 DKGTVSNDHFEIAVTEVTKAPNGQNLHKGTIQFGQVTKGAEVDASVNKDERRSIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + P+ LRFD +H   +T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + MN ++A A GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 RIQEMNIDEAKAMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVENTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    E+   +   +KV   + VV ++ +I +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQIQDEEK 742

Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSG 823
            L  QL    +++          ++  +N +  + +EVD   +K ++S MD  + K+Q  
Sbjct: 743 SLIKQLEQRDKEITSLKMGNIEEQVETINGLKVLATEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L   + + K S++  V +D  D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 VIILAS-NVDGKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NITESLRFIKDYIK 874


>gi|260494135|ref|ZP_05814266.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260198281|gb|EEW95797.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 867

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/909 (37%), Positives = 513/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLTNGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDIVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
           S I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  + +
Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKE 737

Query: 772 LIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K+KL L           +I     +     +  +++L++++D ++ + +  II+L 
Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVREIIE 863


>gi|295706696|ref|YP_003599771.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804355|gb|ADF41421.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 877

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/911 (39%), Positives = 522/911 (57%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +TV+ EDEEAFK+W +  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DADKLSVTVHPEDEEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E     L         E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDLTDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I+A+E ++G KY  N+      +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I+  +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRVVKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+        + + G+  F+LYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDENMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F + +E QR RARA      S   +     L E   A++F+GYD           
Sbjct: 417 IDHAGFEREMEAQRERARAARQDSSSMQVQG--GVLGEVTVASEFVGYD----------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N V ++V+AI+  GE+V+ A +G + +V+   TPFYAE+GGQ+ D G
Sbjct: 464 ------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQIADQG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ DVQK   G  V    V  G L    +   T+D +NR  +  NH+ATHL
Sbjct: 512 TIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGETYTATLDEENRSAIVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG+HV+Q GS +T D LRFD +H   +T  EL+ IE  VN+ I  ++ V   
Sbjct: 572 LHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSISVQIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IVS
Sbjct: 632 NKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   LK  A+ +K +  ++VGRVE + EE R LQ 
Sbjct: 687 ESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEIRNLQR 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +          I  VN ++  ++  D   L++++D L++K++S +I+L
Sbjct: 747 ENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLESAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                E K +++  VT+DL+ +  +A  L +  A + GGGGG GRP MAQ+GG + ++ +
Sbjct: 807 ASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGGG-GRPDMAQAGGKDASQIE 864

Query: 887 QAIAGVASFLK 897
           +A+  V  ++K
Sbjct: 865 KALGTVEEWVK 875


>gi|210615765|ref|ZP_03290746.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787]
 gi|210150101|gb|EEA81110.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787]
          Length = 885

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/907 (39%), Positives = 515/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL FF+   H ++ S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 12  VNELRKMFLNFFESKEHLVMKSFSLVPNNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 71

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 72  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLDPD 127

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G++ ++I +    DNFW     GPCGPCSEI++D+GE  
Sbjct: 128 RLYPSVYVDDQEAFDIWNKEMGIAPERIFKFGKEDNFWEHGS-GPCGPCSEIYYDRGEKY 186

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+         L + +IDTGMGLER+A+V+Q+  
Sbjct: 187 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYEELEQKNIDTGMGLERLASVVQDVD 246

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     +   ++Y  + +  V+ R+I DH+RS++F+I+DGI+P NEGRGY
Sbjct: 247 SIFDVDTIKALRDKVCEFASVEYKADADKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 306

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +       YPEL + K  I + L  E+++F 
Sbjct: 307 VLRRLIRRAARHGRLLGIDGKFLAKLSATVIEGSKDGYPELEEKKEFIFKVLTQEEDKFN 366

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L  +   + +    +L+G  AFKLYDT+G PLD+ ++IL   G   ID   
Sbjct: 367 KTIDQGLSILASMQDEMKEAGKTVLSGADAFKLYDTYGFPLDLTKEILEEAGYT-IDEEG 425

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  ++EEQR +AR           +   +   E    ++F+GYD L              
Sbjct: 426 FKASMEEQRVKARNAREVTNYMGADATVYDEIEASVTSEFVGYDRLTH------------ 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S +  +  + EIVE    GQ   +  D+TPFYA  GGQ GDTG    +
Sbjct: 474 -----------TSKISVLTTESEIVEAITEGQNGTIFVDETPFYATMGGQEGDTGIICTE 522

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +++  K   G   H   V +G+ +   S+ L +  + R     NHSATHLL  AL
Sbjct: 523 DAEFTVSNTIKLLGGKIGHVGNVTKGMFKVGDSVTLEVAEKERANTCKNHSATHLLQKAL 582

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LGSHV Q GS +TPD LRFD  H   +T  EL+ +E+ VN  IA+N+PVVT +MN E
Sbjct: 583 KTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTPEELEKVENIVNTEIAKNVPVVTEVMNIE 642

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A+GA AL G KY + VRVVS+     G  S  LCGGTHVS+TG I    IVSE+ + 
Sbjct: 643 QAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVSNTGNITTFKIVSEAGVA 697

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG     +    +++L   A   K +  N+  ++E +  E + LQ      
Sbjct: 698 AGVRRIEALTGDGVFCYYKEVEKELAEAAKAAKSTPANLKEKIEHMQAEMKALQSEIESL 757

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +   + L        ++  V  ++  + +VD   L+ + D L++K+  G++++   S 
Sbjct: 758 KSKAAKDALGDVMNQVKEVNGVRLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVIAS-SA 816

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K +++ + T++ +++  +A +L +  A ++GGGGG GRP+MAQ+GG N      AIA 
Sbjct: 817 SGKVNLIAMATDEAMEKGAHAGNLIKGIAALVGGGGG-GRPNMAQAGGKNPAGIPDAIAK 875

Query: 892 VASFLKK 898
            A  L +
Sbjct: 876 AAEVLAE 882


>gi|153953949|ref|YP_001394714.1| alanyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219854563|ref|YP_002471685.1| hypothetical protein CKR_1220 [Clostridium kluyveri NBRC 12016]
 gi|205830035|sp|A5N7T5|SYA_CLOK5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146346830|gb|EDK33366.1| AlaS [Clostridium kluyveri DSM 555]
 gi|219568287|dbj|BAH06271.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 879

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/907 (36%), Positives = 525/907 (57%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+K  H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V T
Sbjct: 6   LNQIREMYLSFFEKKAHLRLPSFSLVPQNDKSLLLINAGMTPLKPYFTGLKVPPSKRVAT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T+Y +D+EA+ +W K + +   KI R+   DNFW     GPCGPCSEI++D+ +  
Sbjct: 122 RLYVTIYLDDDEAYDIWVKSTDVDPSKIFRLGKEDNFWEHGV-GPCGPCSEIYYDRAQEK 180

Query: 184 PGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              +     + + ++ +E WNLVF QF++        L   +IDTGMGLERMAT++Q + 
Sbjct: 181 INSVEEFVEAADNDKIVEFWNLVFTQFDKDENGNYNRLSNPNIDTGMGLERMATIMQGEN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D    +++    ++G KY    NN ++ R+I DH+RS +F+I+DGILP+NEGRGY
Sbjct: 241 SIFEVDTINAILKEVCNISGTKYNEHKNNDISIRIITDHIRSITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG  +  +  L   +      +YP+L   K  I++ +R E+ERF 
Sbjct: 301 VLRRLLRRAAKHGKSLGIDDRFLYKLSNVVIDNSCESYPKLKDRKEYIKKVIRLEEERFD 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L+  +  L      +L G+ AFKLYDT+G P+++ ++IL  + + G+D+  
Sbjct: 361 ETIDSGMKILNEFIEELENSNSLLLEGEKAFKLYDTYGFPIELTEEILQEKNM-GVDLEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+ ++ Q+  AR+          E    +    Y  T F GY+ L              
Sbjct: 420 FNKKMQNQKEMARSARTETNYMGAEDTVLNKIPLYIDTVFEGYNSLES------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S VK ++++GE V     G+K  ++   TPFYAE GGQ+GD G    +
Sbjct: 468 -----------TSKVKLMIKEGEFVSLLSQGEKGVILVANTPFYAEMGGQVGDKGIIYNE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               +I D +    G  +H   V  G +  E +++L +D   R  +  NH++THLL  AL
Sbjct: 517 NFEGKIIDCKNNVAGKILHFVEVISGSVSLEDTVLLKVDKNRRDDIRRNHTSTHLLGEAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q+GS +    LRFD  H + +   +L+ +E+ VN+ I +   V T +M+ E
Sbjct: 577 RRVLGEHVHQSGSYVDEHRLRFDFNHFESLNDKQLREVEELVNENIRKAKTVNTNLMSLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA A+  +KY+D VRVVS+     G  S  LCGGTHV ++GEI L  IVSE+ I 
Sbjct: 637 EAKKSGAVAIFDSKYSDEVRVVSI-----GDFSRELCGGTHVGNSGEIGLFKIVSEAGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG+ A  +L  + + LK +A+  K S+  +V +++  + E R+L+    + 
Sbjct: 692 AGIRRIEAVTGREAVEYLYSKSDMLKEIANKFKCSEKEIVHKLDLQFNELRELRKELEEF 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K++L              +  +N  + I+ +VD   L+ + D ++ K Q+ +++L G + 
Sbjct: 752 KIKLAGSAEESILNGVKIVKGINLFTGILKDVDGNALRELADKIRSKSQNAVVLL-GSNA 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K +++ + T+D +++  +   + +  A V GGGGG GRP MAQ+GG   +K ++AI  
Sbjct: 811 EGKVNLVAMATKDAVEKGVHCGKIIKEVAAVAGGGGG-GRPDMAQAGGKFPDKLEEAIGK 869

Query: 892 VASFLKK 898
            ++ ++K
Sbjct: 870 CSAIMEK 876


>gi|300868714|ref|ZP_07113325.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300333275|emb|CBN58517.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 879

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/905 (38%), Positives = 509/905 (56%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL+F+ + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P     T
Sbjct: 9   SGSEIRQKFLDFYAQRGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRSPQSPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI  AW+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKQAIAWAWELCTEVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L I+V+ ED+EAF LW K  G+   +I R+   DNFW    TGPCGPCSEI++D    
Sbjct: 124 ENLVISVFREDDEAFDLWAKEIGIPPQRIQRMGEEDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              G     E+  R+IEI+NLVFMQ+ +        L   +IDTGMGLERMA VLQ+  N
Sbjct: 184 K--GDDIDLEDDTRFIEIYNLVFMQYNRDAAGNLTPLQNQNIDTGMGLERMAQVLQKVPN 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +++ + ++  + Y   + N  ++ +VI DH+R+   +IAD I  +N GRGY
Sbjct: 242 NYETDLIFPIVKTAAEIARIDYSQADENTKISLKVIGDHIRAVVNMIADEIRASNIGRGY 301

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + RL+G     +  +          AYP + Q    I+  L  E+  F 
Sbjct: 302 VLRRLIRRAVRHGRLIGIEGGFITKVAETAIALCEDAYPNVRQRSAAIQAELEREEANFL 361

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL+RG  LL  ++  L +     ++G  AF LYDT+G PL++ Q+I   +GL  +D+  
Sbjct: 362 RTLERGEKLLAEIIDRLQQQGKNQIDGQDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEG 420

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F QA+EEQR+R +     +   T +     L E   AT+F+GY  L  +           
Sbjct: 421 FEQAMEEQRNRGKDAHETIDL-TVQGSLDKLAENIHATEFVGYKQLSSNV---------- 469

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         VK I+  G+ VEEA    +++V+ +QTPFYAE+GGQ+GD G   GD
Sbjct: 470 -------------QVKVILVNGKSVEEASEESEIQVILNQTPFYAESGGQIGDRGDLSGD 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            I ++I DV+K+++  FVH   +ERG LR   S+   +D   RR++  NHSATHLL  AL
Sbjct: 517 SILVKIEDVKKESD-FFVHFGRIERGTLRVGDSMTAQVDNSRRRRVQANHSATHLLQAAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+ + +SQ GS +  D LRFD    + IT+ EL+ IED +N  IA+        M   
Sbjct: 576 KQIVDNSISQAGSLVDFDRLRFDFNCPRSITAEELQKIEDLINSWIAEAHLAEIAQMPIA 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA A+ G KY D VRV+          S  LCGGTHVS+T EI L  IVSE+ I 
Sbjct: 636 EAKKKGAVAMFGEKYGDVVRVIDFPG-----VSMELCGGTHVSNTAEIGLFKIVSETGIS 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA++GQ    +L  +D+ ++ L    K     +  R+  +  E +  Q      
Sbjct: 691 SGIRRIEAVSGQAVLDYLNVRDKVVRDLGDRFKAKPEELPNRITNLQNELKANQKELEAL 750

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L +            + +   +   + +VD++ LK+  + LQ+K+ +  ++L  + +
Sbjct: 751 KSELAIAKSDQLLSSAESVGEFKIIIAELGDVDTEALKTAAERLQQKLGNAAVVLASVPE 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + D+  +   A       AK+ GGGGG GRP++AQ+GG + +K  +A+  
Sbjct: 811 ADKVSLVAAFSADVNKKGLQAGKFIGQIAKICGGGGG-GRPNLAQAGGRDASKLKEALES 869

Query: 892 VASFL 896
             + L
Sbjct: 870 ARNLL 874


>gi|146296899|ref|YP_001180670.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|205830010|sp|A4XKP4|SYA_CALS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145410475|gb|ABP67479.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 881

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/909 (37%), Positives = 518/909 (56%), Gaps = 50/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH  LPS SLIP ND +L+  N+GM P K  F G E+P  + +
Sbjct: 3   MSTDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRI 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L 
Sbjct: 63  TTCQKCIRT----PDIDKVGKTARHATFFEMLGNFSFGDYFKKEAITWAWEFVTEILKLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EAF++W K  GL   +I R+   DNFW +  TGPCGPCSEI+FD+G 
Sbjct: 119 KERLWVTIYEEDDEAFEIWHKEVGLEEGRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGV 177

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G    G   + +RY+E WNLVF QF++        L   +IDTGMGLER+A ++Q 
Sbjct: 178 DKGCGKETCGIGCDCDRYVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +DID+ K +     ++TG +Y  +    V+ RVI DH+R + F+I DGILP+NEGR
Sbjct: 238 VDSLFDIDIVKAIRDKICEITGCEYGKDSEKDVSIRVITDHIRGTVFMIGDGILPSNEGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG  E  +  ++  +     S YPELIQ    I++ L +E+ R
Sbjct: 298 GYVLRRLIRRAARHGRMLGKRETFLHLIVDTVIEAYKSPYPELIQKGEYIKKVLYNEESR 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D GL LL+  +  L K++  +L G++AFKLYDT+G PLD+ ++I   +G+  +D 
Sbjct: 358 FNQTIDIGLELLENEIDRLKKNKENVLKGEIAFKLYDTYGFPLDLTREIAAEKGII-VDQ 416

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ+ RAR     L +   + I  +++++   T F+GYD L            
Sbjct: 417 AGFDRLMQEQKERARMAQKELENIGWKDINITIEDEV-ETVFVGYDTLET---------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I    + V  A  G    ++ D+TPFYAE+GGQ+ D G   
Sbjct: 466 -------------QSRVLKIFSNDDEVSYAKEGDICYIILDKTPFYAESGGQVADKGVLE 512

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G   ++ DV+K  +G  +H A V +G +  + ++   ++   R     NH+ATHLLH 
Sbjct: 513 TEGGVAEVLDVKKGPKGTILHKAKVIKGEIAVDNNIFAKVNKNLRLATMKNHTATHLLHS 572

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           +L  ILG H +Q+GS + P+ LRFD  H +P++  ++  IE  VNDII Q +PV     +
Sbjct: 573 SLRRILGEHATQSGSLVEPERLRFDFAHFEPLSEEQIVEIEKMVNDIIQQAIPVEKIQTD 632

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + AI  GA AL   KY++ VRV+ +     G  S  LCGGTHV +TG+I +  I+SESS
Sbjct: 633 LDSAIKMGATALFDEKYSNIVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESS 687

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG +    ++   + LK + + LK +    +V ++ ++ E    L+   
Sbjct: 688 VAAGVRRIEAITGNKVYEFMLNNQKVLKDIRNKLKANSDSEIVAKINQLEERITALEKEL 747

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K KL L   +L        +I +   + +     D+  ++ + D +++K  S  I+L  
Sbjct: 748 EKHKLLLVDNELSLLYNEGLQIGEFRLIINKKETHDTDYIRLLTDRVREK-DSKAIVLNL 806

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           I ++KKA VL+  +++ + +  +     +   +VL GG GGGRP  AQ GG      D A
Sbjct: 807 IKQDKKAIVLMACSKEAVKKGIDCGKTVKDVCEVL-GGKGGGRPDFAQGGGNKIENLDLA 865

Query: 889 IAGVASFLK 897
                  +K
Sbjct: 866 AQRAIELIK 874


>gi|319892672|ref|YP_004149547.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162368|gb|ADV05911.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
          Length = 876

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/909 (39%), Positives = 516/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +  
Sbjct: 6   ASDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT      ++
Sbjct: 66  AQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSERWMAME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ LW  + GL+ D+IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PEKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                          E ERY+E+WNLVF +F          LP  +IDTGMGLERM ++ 
Sbjct: 179 AYGQDDSAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLERMTSIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   NY+ DLF  +I   E ++G KY  + +N V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I   ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++      +E + G+ AFKLYDT+G P+++ ++I    GLA ID
Sbjct: 359 ERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEGLA-ID 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + SFN  +E QR RAR       S   +     LKE    ++F+GY+             
Sbjct: 418 MDSFNDHMEAQRDRARKARQSSQSMQVQSEV--LKEINTVSKFLGYEAFETH-------- 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  IV+ GE V  A +G+ +  + DQTPFYA +GGQ+ D G  
Sbjct: 468 ---------------AKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQVADKGTV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 +Q+T+V K   G  +H  +V+ G +R    +  TID Q R  +  NHSATHLLH
Sbjct: 513 SNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +  D LRFD +H  P+T+ E+K +E  VN+ I  ++PV  + M
Sbjct: 573 AALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIPVEIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N EDA A GA AL G KY D VRVV+++       S  LCGGTHV +T EI L  I SES
Sbjct: 633 NIEDAKAKGAMALFGEKYGDIVRVVNMQP-----FSIELCGGTHVRNTSEIGLFKITSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773
              AG+RRIEA+TGQ A  +L    ++  +L   +K      V+ +VE++    + L+  
Sbjct: 688 GTGAGVRRIEAVTGQNAFLYLEHYLDQFNALKQQVKAKSDAQVIEKVEQLQYNEKTLKQT 747

Query: 774 HAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
              +   LN   +     ++  +N MS +I+EV   ++K +++ MD  + K+Q  II+L 
Sbjct: 748 IEDKNKALNELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKLQDSIIVLA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S++  V + L DR  A D+ +  A V+ GG GGGRP MAQ GG    K  +A
Sbjct: 808 S-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPGKITEA 865

Query: 889 IAGVASFLK 897
           +  + +++K
Sbjct: 866 LQFIKNYIK 874


>gi|167746982|ref|ZP_02419109.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662]
 gi|167653942|gb|EDR98071.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662]
          Length = 868

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/900 (39%), Positives = 519/900 (57%), Gaps = 50/900 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FL+FF+   H ++ S SL+P ND +L+  N+GM P K  FTGQE P    V T QKC+R
Sbjct: 1   MFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPKTRVATCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPERLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G P 
Sbjct: 117 YLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKYGCGSPD 175

Query: 190 SS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            +   E +RY+E+WN VF QFE         L   +IDTGMGLER+A V+QE  + +D+D
Sbjct: 176 CTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVVVQEVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K +     ++ G+ Y  +  N ++ RVI DH+RS+SF+I+DG++P+NEGRGYVLRR++
Sbjct: 236 TIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSNEGRGYVLRRLI 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + R+LG  +  +  L   +  E    YPEL + +  I + L +E+E+F +T+D+G
Sbjct: 296 RRAARHGRMLGMKDLFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTEEEQFNRTIDQG 355

Query: 366 LVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           L +L   +  +S  GK E L G  AFKLYDT+G PLD+ ++IL  +G++ +D   F +A+
Sbjct: 356 LQILADMEEAMSREGKKE-LAGKDAFKLYDTYGFPLDLTKEILEEKGIS-VDETGFQRAM 413

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           E+QR +AR           +   +   +    ++F+GYD L                   
Sbjct: 414 EQQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL------------------- 454

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  S + A+    E+ +  V GQ+  ++  +TPFYA +GGQ  D G  + +     
Sbjct: 455 ----TCESEIIAMTTDQELTDSLVEGQRGTIICSRTPFYATSGGQEADQGVILSENSSFA 510

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + DV K + G F H   V  G L     ++L ++ +NRRQ   NHSATHLL  AL T+LG
Sbjct: 511 VEDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHLLQKALRTVLG 570

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHV Q GS      LRFD TH  P+T  E+K +E  VN+ IA +LPV T++M+ ++A  +
Sbjct: 571 SHVEQAGSSNNAKHLRFDFTHFSPMTPEEIKKVEHIVNEEIAASLPVETKLMSMDEAKNT 630

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRVVS+     G  S  LCGGTHV++TG I    I+SE+ I AG+RR
Sbjct: 631 GAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITAFKILSETGIAAGVRR 685

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEAIT +    +    +E+L   +  +K +   ++ R+E +  E ++L   +   K +L 
Sbjct: 686 IEAITDKAVFEYYEKMEEELMEASKVVKSTPAKLMARLEALMTELKELHSENESLKSKLA 745

Query: 783 VEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            + L         +  V  ++  +++VD   L+ + D+L++K+  G+I+L   S   K  
Sbjct: 746 KDALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVLAS-SLGGKVF 804

Query: 838 VLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ + T+       +A +L +  A  +GGGGG GRP+MAQ+GG      D AIA     L
Sbjct: 805 LVAMATDGAQKAGAHAGNLIKGIAGCVGGGGG-GRPNMAQAGGKKPEGIDDAIAKAKEEL 863


>gi|164688540|ref|ZP_02212568.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM
           16795]
 gi|164602953|gb|EDQ96418.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM
           16795]
          Length = 879

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 543/905 (60%), Gaps = 48/905 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR +F +FF+  GH +  SSSLIP ND +L+  NSGM P KN F+G E P    ++TV
Sbjct: 7   NEIRKSFTDFFESKGHYIGKSSSLIPKNDKSLLLINSGMAPLKNYFSGVEVPPKNRMSTV 66

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEM+GNFSFG YFKE AI+ AW+ +TK  ++ + +
Sbjct: 67  QKCIRTG----DIENVGKTARHGTFFEMMGNFSFGDYFKEDAIKWAWEFVTKHLEIPEDK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           ++ TVY  D+EA  LW K S +  ++I+R+  +DNFW +   GPCGPCSE+++D+GE   
Sbjct: 123 IWATVYLNDDEAHDLWLKYSSIPEERIVRLGKDDNFWEIGL-GPCGPCSELYYDRGEQYG 181

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P      + +RY+E WNLVF QF++Q       L   +IDTGMGLER+  ++Q+  N
Sbjct: 182 CDNPDCKPGCDCDRYLEFWNLVFTQFDRQEDGSYPELAHKNIDTGMGLERIGCIMQDVDN 241

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +++D  + +I   E+V+G+KY  +  + V+ R+I DH+R+ SF+IADGILP+NEGRGYV
Sbjct: 242 IFEVDTIRAIIDEIERVSGVKYGVDAKSDVSIRIITDHIRAMSFMIADGILPSNEGRGYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA  + +LLG  E  + +L   +    G AYPEL++ +  I++ ++ E+E+F +
Sbjct: 302 LRRLLRRAARHGKLLGIKEDYLYNLFDVVKEVSGEAYPELVEKEGYIKKVIKIEEEKFNE 361

Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+G  +L+G +  L  +    L G+  FKLYDT+G P+D+ Q+IL   G   +D   F
Sbjct: 362 TIDQGSEILNGYIEELKANNESTLAGEKVFKLYDTYGFPMDLTQEILEEVGF-DLDEEGF 420

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           N  +++QR RAR+    +   + ++   S  +   A+ F GY  L               
Sbjct: 421 NTEMDKQRERARSARGNMEGESWKEDPLSTLDSSVASTFCGYKHL--------------- 465

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     + +V AIV+  EIV+    G K  +V D+T FYAE GGQ+GD+G    + 
Sbjct: 466 --------STTGVVNAIVKDDEIVDSITEGDKAIIVLDRTTFYAEGGGQVGDSGILENEN 517

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++   +K A     H  IV++G + T+  L   ++ + R   + NHSATHLLH AL 
Sbjct: 518 AVFEVITTKKGANNTIKHIGIVKKGSINTKDELKSLVNREIRMASARNHSATHLLHKALK 577

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG HV+Q GS +TP+ LRFD+TH +PI+  EL  +E  VND+I Q+L +   +M   +
Sbjct: 578 ETLGEHVNQAGSLVTPERLRFDITHFEPISKEELDIVERKVNDVILQSLDIDCEVMGINE 637

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY + VRVVS+     G +S  LCGGTH+++T ++ L  I+SE  + A
Sbjct: 638 AKEKGAMALFGEKYGNEVRVVSM-----GDYSIELCGGTHLNNTSQVGLFKILSEGGVAA 692

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEAITG+    +L  +DE ++   + LK  + N+V RV  + EE + L  +L   K
Sbjct: 693 GVRRIEAITGRSVYEYLNNRDELIEETCNALKTKEDNLVHRVNALVEENKSLTKELHDVK 752

Query: 777 RKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            K+ L   D       ++  VN ++    ++D   LK + D L+ K+QSG++ +  +S +
Sbjct: 753 AKMSLQSADKLMDSKVEVNGVNLVTAKFEDMDMNSLKEMADNLRDKLQSGVVAISNVS-D 811

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K + ++  T+D++DR  ++ ++ +  AK+ GG GG GRP+MAQ+G  +  K D+A++  
Sbjct: 812 SKVNFVVTATKDVIDRGIHSGNIVKEIAKIAGGKGG-GRPNMAQAGATDATKIDEALSYA 870

Query: 893 ASFLK 897
              +K
Sbjct: 871 CEVIK 875


>gi|157693144|ref|YP_001487606.1| alanyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|205829985|sp|A8FFM9|SYA_BACP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157681902|gb|ABV63046.1| alanine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 878

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/915 (37%), Positives = 511/915 (55%), Gaps = 58/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + +R  FL+FF++ GH + PS+SL+P +DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKTLTSAQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT  +
Sbjct: 61  PRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L +TV+ EDEEA+ LW+   G+  ++IIR+    NFW + E GP GP +EIF
Sbjct: 117 WIGFDPNLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E ERY+E+WNLVF +F          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGHDMNDPELYPGGENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           M +V+Q    N+D DLF  +I+A E ++G  Y          +VI DH+R+ +F ++DG 
Sbjct: 234 MVSVIQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ YA+ +    P M  L+P +   M   YP++   +  I + 
Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF +TL+ GL +L  V+          ++G+  FKLYDT+G P+++ ++     
Sbjct: 354 IKNEEERFHETLNEGLAILSEVIKKERDKGSSQISGEDVFKLYDTYGFPVELTEEYAEDE 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F   +E+QR RAR     +GS   +    +L +    + F+GY+ L     
Sbjct: 414 HMT-VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENLTAVAH 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           M E                       ++Q GEIV EA  G  V+++ D+TPFYAE+GGQ+
Sbjct: 471 MIE-----------------------LLQNGEIVSEAHEGDTVQILLDETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G      + + I DV+K   G  VH  +V  G  +  + +   ++   R+ +  NH+
Sbjct: 508 ADKGTLKSAEVIIDIKDVKKAPNGQHVHEGVVVSGTAKKGLVVTAEVESALRKGIVKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS +  + LRFD +H   +T  EL  IE  VN+ I + + 
Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGIS 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   +    +A   GA AL G KY D VRVV V     G +S  LCGG HV +T EI L 
Sbjct: 628 VAIDLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SES I AG RRIEA+TG+ A   L  Q   L+  AS LK +  +V  R+  +  + +
Sbjct: 683 KIASESGIGAGTRRIEAVTGKGAYEELNDQLGILEQAASELKSNTKDVPKRIASLQADLK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++Q  +     +L+  +         +I  V  ++  ++  D   L++++D L+ K+ S 
Sbjct: 743 EVQRENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L G  +  K ++   VT+D++++  +A  L + +A++ GGGGG GRP MAQ+GG   
Sbjct: 803 VIVL-GAVQNGKVNISAGVTKDVIEKGLHAGKLVKQAAEICGGGGG-GRPDMAQAGGKQP 860

Query: 883 NKADQAIAGVASFLK 897
            K ++A+  V   +K
Sbjct: 861 EKLEEALTSVEESVK 875


>gi|238651102|ref|YP_002916960.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|238625200|gb|ACR47906.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 878

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/901 (45%), Positives = 558/901 (61%), Gaps = 37/901 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHIPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+II+I TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           I GGLPG+  E+G+R+IEIWN+VFMQ+EQ +K     L + SIDTGMGLERM  VLQ   
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVN 244

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYDIDLF+ +I  +E +  +K EG    ++RVI DHLR+SSFLIADG++P+NEGRGYVL
Sbjct: 245 NNYDIDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVL 304

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRR+M +A +LG  EPLM  LLP L   MG+ YPEL +A+  I   L  E+ RF  T
Sbjct: 305 RRIMRRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAENFISSILEQEEIRFKAT 364

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RGL LL      L K   L+G+VAFKLYDT+G PLD+ +DIL  R +A +D   F + 
Sbjct: 365 LERGLKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQ 423

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +  Q+ RAR   LG G   T ++WF +KE++G+T+F+GY L                   
Sbjct: 424 MLMQKERARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTLNEAKC-------------- 469

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                     + A+++   +V +      +  ++ +QTPFY E+GGQ+GD G        
Sbjct: 470 ---------KIIALIKNNNLVNDIKEIDTQFLLISNQTPFYGESGGQIGDIGTIFAKDSE 520

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +++ D  K    I VH  I+++G +    +   +ID + R+ L I+HSATH+LH  L  +
Sbjct: 521 VEVIDTLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEV 580

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV Q GS + P  LRFD++HSK +T+ E+  IED VN+II  N  V T +M  EDA+
Sbjct: 581 LGKHVIQKGSLVAPTYLRFDISHSKTVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAV 640

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY+  VRVV +     G  S  LC GTHV  TG+I    I SES+I AG+
Sbjct: 641 KQGATALFGEKYDSEVRVVKM-----GETSLELCSGTHVRRTGDIGCFKITSESAIAAGV 695

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
           RRIEA  G+   + +  +D  LKS+ S  K ++  ++ +V  I E  ++++    K    
Sbjct: 696 RRIEAACGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLA 755

Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L +   +    +I  +  +   +  +D+K L+   + L KK++  I++ +      K
Sbjct: 756 SLDLSIEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGI-GK 814

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+ + V++ + D++NA  +A+  +  LGG GGGG+  +AQ+GG +  K       + S 
Sbjct: 815 LSITVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGGNDIGKLTNIHEKLYSL 874

Query: 896 L 896
           L
Sbjct: 875 L 875


>gi|325265418|ref|ZP_08132142.1| alanine--tRNA ligase [Clostridium sp. D5]
 gi|324029419|gb|EGB90710.1| alanine--tRNA ligase [Clostridium sp. D5]
          Length = 879

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/894 (38%), Positives = 504/894 (56%), Gaps = 48/894 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDDAIKWSWEFLTEVVGLDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W K  G+ A++I +    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFEIWNKKMGIPAERIFKFGKEDNFWEHGS-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+EIWN VF QF+   K     L + +IDTGMGLER+A+V+Q+  
Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGKGNYVELEQKNIDTGMGLERLASVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++    Y  E N  V+ RVI DH+RS +F+I+DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDHVCRLADAAYGNEDNTDVSIRVITDHVRSVTFMISDGIMPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLL      +  L   +       YPEL + K  I + +  E+E+F 
Sbjct: 301 VLRRLLRRACRHGRLLNIEGNFLPALAETVIEGSKDGYPELEEKKDFILKVIAKEEEQFN 360

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            T+D+GLV+L  +++ + K     L+GD AFKLYDT+G P+D+ ++IL  + +  +D   
Sbjct: 361 NTIDQGLVILSDMIAGMEKRGEITLSGDDAFKLYDTYGFPIDLTKEILEEKEM-NVDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A+E QR  ARA          +   +   +    + F+GYD L              
Sbjct: 420 FHAAMEIQRKTARAARGVTNYMGADVTVYESIDPSITSTFVGYDNLVY------------ 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + E+ E    G++  +   +TPFYA +GGQ  D+G     
Sbjct: 468 -----------ESEITVLTSETEVAEALSDGERGTIFVKETPFYATSGGQEADSGVIRTP 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K   G   H   V +G+++T     L +D + R   + NHSATHLL  AL
Sbjct: 517 EGEFKVEDTIKLLGGKIGHVGHVVKGMVKTGDKAELAVDARKRSLSARNHSATHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            T+LG+HV Q GS +  D LRFD TH   ++  ELK +E+ VN+ IA+ LPV  + M  E
Sbjct: 577 RTVLGTHVEQAGSSVNEDRLRFDFTHFSALSQEELKQVENIVNEHIAEALPVDIQNMPIE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV++     G  S   CGGTHV +T EIM   I+SE+ + 
Sbjct: 637 EARKTGAQALFGEKYGDIVRVVNM-----GGFSIEFCGGTHVKNTSEIMAFKIISETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T Q    +    + K+   A  LK S  N+  ++  +  E + L       
Sbjct: 692 AGVRRIEALTSQGLLDYYDALEVKMNEAAKLLKASSDNLAEKITHVMAENKTLHSEVESL 751

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + +        ++  V  ++  +  VD   L+ + D +++K+  G+++L   S 
Sbjct: 752 KSRLAQDAMGDVMDQVREVKGVKLLAAEVDGVDMNGLRDLGDQMKEKLGEGVVVLASGS- 810

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + K S+++  T+  +    +A +L +  A ++GGGGG GRP+MAQ+GG N    
Sbjct: 811 DGKVSLMVTATDGAMKQGAHAGNLVKAIAGLVGGGGG-GRPNMAQAGGKNPAGI 863


>gi|289450565|ref|YP_003475604.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185112|gb|ADC91537.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 886

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/912 (37%), Positives = 504/912 (55%), Gaps = 55/912 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  LPS SL+P  DP+++  N+GM P K  F G E P  + VTT
Sbjct: 6   LNEIREKYLSFFESKGHLRLPSFSLVPQKDPSILLINAGMTPLKPYFIGTEVPPCKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++ VG T+RH TFFEMLGNFSFG YFK  AI  AW+ +T+   L + 
Sbjct: 66  CQKCIRT----PDIERVGYTSRHGTFFEMLGNFSFGDYFKAEAISWAWEFITEVLKLPEE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D+EA+  W +  G++ +KI R+   DNFW    TGPCGPCSEI FD+G  +
Sbjct: 122 RLYITVYKDDDEAYDYWHQKIGVAENKIYRLGKEDNFWEHG-TGPCGPCSEIHFDRGPNV 180

Query: 184 PGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P      + +R++E WNLVF QF++Q       +   +IDTG GLER A ++Q   
Sbjct: 181 GCGRPDCHVGCDCDRFVEFWNLVFSQFDRQEDGTYLPMVHKNIDTGGGLERFACIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  + ++ A  ++  + Y  ++   V  RVI DH+RS++ +I+DG+LP+NEGRGY
Sbjct: 241 NLFEVDTVRRILDAVCKIAKVHYGNDHMADVAIRVITDHIRSTTMMISDGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  Y RLLG     +  LLP +  E   AYPEL + +  I   + +E++RF 
Sbjct: 301 VLRRLLRRAARYGRLLGIDGLFLHDLLPVVVQESCGAYPELKEREDYILRVIETEEKRFD 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+ +G  LLDG ++   K     L+GDV FKL+DT+G PLD+ ++I   +G++ +D   
Sbjct: 361 KTVKQGSQLLDGYINEAKKAGSGELSGDVVFKLHDTYGFPLDLTREIAAEQGIS-VDEAG 419

Query: 418 FNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F + ++ Q+  ARA     G S        +  E    TQF+GY        +       
Sbjct: 420 FKKNMQRQKDEARAALKAKGGSAWAAGCLPAEVEHKNPTQFVGYSEFSAKGKLLYIISSD 479

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
               PI                  ++  A     V ++ D+TPFYA  GGQ+GD G   G
Sbjct: 480 EAGEPI------------------LLPMAGVDADVILITDRTPFYATGGGQVGDIGTITG 521

Query: 537 D-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           + G+++++ D  K AEGIF+HH  V  G L   M L L ++   R  +  NHSATHLLH 
Sbjct: 522 EHGLKVEVKDTTKTAEGIFLHHCHVIAGSLEPGMELDLAVNRPVRMDIMRNHSATHLLHK 581

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG+HV+Q GS +  + LRFD  H KP T+ EL+ IE  VN  I  N   VT +M 
Sbjct: 582 ALRTVLGTHVTQAGSLVNAEHLRFDFHHMKPCTAEELRQIEAEVNRAILANYQSVTEVMP 641

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL   KY D VRVVS+     G +S   CGGTH+S T ++ + +IVSE S
Sbjct: 642 MAEAKKKGAMALFDEKYGDMVRVVSM-----GDYSVEFCGGTHLSETSQVGIFHIVSEGS 696

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQ 771
           + +GIRRIEAITG  A   L    +     A  LK+   ++  R+ ++      E +K Q
Sbjct: 697 VASGIRRIEAITGSAALRWLQDLQKTTAEAADMLKIKVADLPERIAQLQNDLKAETKKFQ 756

Query: 772 LIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            + ++  K Q         + A +N+++  +S     +L+++ ++L+ ++    ++L G 
Sbjct: 757 ALQSELAKAQAAELKNKAREAAGINYLAAAVSVDGVDDLRAMAESLRSQLAPAAVVL-GA 815

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV-----LGGGGGGGRPHMAQSGGPNGNK 884
               K + + + + + + +   A +L + +A +      G      RP MAQ+GG +  K
Sbjct: 816 EINGKLNFVAMASPEAVKKGVKAGNLVKAAASISGGGGGG------RPDMAQAGGKDVAK 869

Query: 885 ADQAIAGVASFL 896
             +A+A     +
Sbjct: 870 LPEALAAAEQEI 881


>gi|170289222|ref|YP_001739460.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|205830279|sp|B1LBS9|SYA_THESQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170176725|gb|ACB09777.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 863

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/902 (40%), Positives = 536/902 (59%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I   E++TG+ Y  +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++   GK   ++ + AF+LYDT+GLPL++  +I   +G+  +D+
Sbjct: 359 NRFLKTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++RA  +G         +     K   T+F GY+ L            
Sbjct: 415 QEFNKYMEEQQRKSRAA-MGDVEFARRYEYLEKLPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  I +  E VEEA  G  VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLIARDDETVEEASEG-TVEVVFSRTPFYAEKGGQVSDTGMVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +  V + +EG+ V    +  G LR    +VL +D + R     NH+ATHLLH 
Sbjct: 510 WRDGKALVEYVFEASEGVIVQRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D VRVV          S  LCGGTHV +TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVVRVVE-----VPGVSKELCGGTHVKNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG  A   L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++   +  +   +   V     +   V++K L  + D + KK   GI++L     E K
Sbjct: 745 QGRISEKMIAMKQLE-DGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVILFS-KFENK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +++ V+E+LLDR++A  +AR  AK L GG GGGR + AQ+GG +  +    +  +  F
Sbjct: 803 VFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERLEEF 861

Query: 896 LK 897
           L+
Sbjct: 862 LR 863


>gi|260438422|ref|ZP_05792238.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292809008|gb|EFF68213.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 884

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/910 (37%), Positives = 510/910 (56%), Gaps = 52/910 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRKYLEFFESKGHLKMNSFSLVPQNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   +++ 
Sbjct: 66  CQKCIRTG----DIDNVGKTARHLTFFEMLGNFSFGDYFKHEAINWSWEFLTKVIGMEED 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI-----TTNDNFWSMAETGPCGPCSEIFFD 178
           RLY ++Y +D+EAF +W K  G+ A++I R         DNFW     GPCGPCSEI++D
Sbjct: 122 RLYPSIYADDDEAFNIWTKEVGVPAERITRFYRDENGDCDNFWEHGA-GPCGPCSEIYYD 180

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +G     G P      + +R++E+WN VF QFE         L + +IDTGMGLER+A V
Sbjct: 181 RGIKYGCGKPDCKVGCDCDRFMEVWNNVFTQFESDGHHHYTELKQKNIDTGMGLERLAVV 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     ++ G+ Y  + +  V+ R+I DH+RS +F+ +DGI+P+N
Sbjct: 241 VQDVDSVFDIDTMKAIRDKICELAGVTYMEDEHKDVSIRLITDHIRSVTFMASDGIIPSN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + R LG     +  L   +       YPEL + + LI + L +E
Sbjct: 301 EGRGYVLRRLLRRAARHGRTLGIDGLFLAKLATTVIDSSKDGYPELDEKRELILKVLTTE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E F KT+D+GLV+L  + S L K+    L+G+ AF+LYDT+G P+D+  +IL  +G   
Sbjct: 361 EENFNKTIDQGLVILSDLESRLVKEGKTCLDGEDAFRLYDTYGFPIDLTNEILEEKGFT- 419

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  FN A+ +Q+  AR           +   +   +    ++F+GYD L         
Sbjct: 420 VDMDGFNNAMNKQKETARGARKETNYMGADATVYDKIDTRITSEFVGYDTLET------- 472

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +    +I +    G +  ++ ++TPFYA  GGQ GDTG
Sbjct: 473 ----------------ESEITVLTTSEDITDTLAEGMEGTIIVNKTPFYATMGGQQGDTG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I +G   ++ D  +   G   H   V  G  +    + LT+D + R   + NHSATHL
Sbjct: 517 VIICNGSVFEVIDTIRLKGGRVGHVGKVTAGSFKVGDKVTLTVDEKKRIDTAKNHSATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS +TPD LRFD TH +P+T  E++ +E  VN+ I +++ V T+
Sbjct: 577 LQEALRIVLGNHVEQAGSLVTPDRLRFDFTHFQPMTEEEIEKVEAIVNEQIEKSIDVETK 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++  EDA  +GA AL   KY D VRVV +     G  S   CGGTHVS+TG I    IVS
Sbjct: 637 VLAIEDAKKTGAKALFNEKYGDTVRVVCM-----GDFSKEFCGGTHVSNTGLINSFKIVS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG    ++    ++K   +    K +  NV  ++  +  E + L  
Sbjct: 692 ESGVAAGVRRIEALTGNGVFAYYKDIEKKYNDICKAAKATPANVEEKIAHMQAEIKSLNS 751

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                K +   E L         +  V F++  +++VD  EL+++ D L+ KI SG+++L
Sbjct: 752 EIESLKNKAANEALGDVLNQAEDVNGVKFLAVKLNDVDMNELRNLSDDLKSKIGSGVVVL 811

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                  K ++++  T+D++    +A ++ + +A  +GGGGG GRP+MAQ+GG N    +
Sbjct: 812 ASAMGSDKVNLIVTATDDIVKAGVHAGNIIKSAAPCVGGGGG-GRPNMAQAGGKNPAGIE 870

Query: 887 QAIAGVASFL 896
           +A       L
Sbjct: 871 KAFETAKETL 880


>gi|239637575|ref|ZP_04678547.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596793|gb|EEQ79318.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 876

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/914 (37%), Positives = 509/914 (55%), Gaps = 57/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+K+W +  GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDIEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEDFGKDDPEEEMYPGGENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
           M ++ Q    NY+ DLF  +I   EQV+G  Y  NN   V  +VI DH+R+ SF IADG 
Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKNYLQNNDQDVAFKVIADHIRTISFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKSDFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL+ GL +L+G +S   + ++ +NG  AFKLYDT+G P+++ +++    G
Sbjct: 354 IKSEEERFHETLEEGLSILNGFISQAKEGNQEINGKDAFKLYDTYGFPIELTEELATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D+ +F   +++QR RAR       S   +     LK     + F+GYD        
Sbjct: 414 LT-VDMTTFETEMQQQRDRARQARQNSQSMQVQSEV--LKNITTESHFVGYDTTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++Q GE V++A + + +  +   TPFYA +GGQ+ 
Sbjct: 467 -------------------QTELIHLIQNGEEVDKADAEETIYFMLKDTPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + +T+V K   G  +H   V+ G +     +  +++   RR +  NHSA
Sbjct: 508 DKGIVSNDHFEIAVTEVTKAPNGQNLHKGTVQFGQVNKGSEVDASVNKDERRSIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS + P+ LRFD +H   +T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGEHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEIWRGIDV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + MN ++A A GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 RIQEMNIDEAKAMGAMALFGEKYGDVVRVVNMAP-----FSIELCGGIHVENTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           IVSES   AG+RRIEA+TG+ A  +L    E+   +   +KV   + VV ++ +I +E +
Sbjct: 683 IVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQIQDEEK 742

Query: 769 KLQLIHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +     I  +  ++  +   ++K ++S MD  + K+Q  
Sbjct: 743 SLIKQLEQRDKEITSLKMGNIEDQVETINGLKVLATEVDVPNAKAIRSTMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +I+L   + + K S++  V +D  D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 VIILAS-NVDDKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLK 897
              +++  +  ++K
Sbjct: 861 NITESLRFIKDYIK 874


>gi|225389081|ref|ZP_03758805.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme
           DSM 15981]
 gi|225044859|gb|EEG55105.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme
           DSM 15981]
          Length = 887

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/907 (37%), Positives = 511/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK+ AI+  W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKDDAIRWTWEFLTEVVGLDPD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF++W +  G+ A++I +    DNFW     GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLEDDEAFRIWNEKIGIPAERIFKFGKEDNFWEHGS-GPCGPCSEVYYDRGEKY 188

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RYIE+WN VF QF+   K     L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGKGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    ++   +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCELAHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     M  L   +       YPEL   K +I + L  E+++F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGQFMAGLAATVIELSKDGYPELEDNKAMIFKVLEQEEDKFN 368

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+  ++ +    +  L G  AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 369 KTIDQGLSILNDRIADMQAKGENTLAGADAFKLYDTYGFPLDLTREILEEKGY-GVDEDG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F  A++EQ+ +AR           +   +   +    T+F+GY+ L              
Sbjct: 428 FAAAMKEQKDKARNARKTTNYMGADVTVYQSIDPAITTEFVGYNNL-------------- 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + EIVE    GQ+  V+ +QTPFY   GGQ GD G   G 
Sbjct: 474 ---------TAESKITVLTTEDEIVEALTDGQRGTVITEQTPFYGTMGGQQGDVGVITGQ 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  ++  G+L+   ++ L++  +NR     NHSATHLL  AL
Sbjct: 525 NGEFKVEDTIHLQGGKVGHVGVMTHGMLQNGNTVTLSVCARNRALTCQNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q+GS +    LRFD TH   +T  EL  +E+ VN  I   LPV T++M  +
Sbjct: 585 RLVLGEHVKQSGSYVDAGRLRFDFTHFSAMTPEELGKVEELVNQEIRAGLPVETQVMTLD 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +     G  S+ LCGGTHV++TG I    I+SE+ I 
Sbjct: 645 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVANTGSIASFKILSETGIA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    H    +++L   A   K +   +  ++E + EE + L   + K 
Sbjct: 700 AGVRRIEALTSEGLMKHYEEVEKELHEAAKTAKTTPAGLSAKIEGLLEEIKALSAENEKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  V  ++  +++VD   L+ + D L+ K+  G++++  +  
Sbjct: 760 KSKLAKDSLGDVMNQVKEVNGVKVLASQVADVDMNGLRGLGDQLKDKLGEGVVLIASV-M 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++   T+    +  +A +L +  A ++GGGGG GRP MAQ+GG N    ++A+  
Sbjct: 819 DGKVNLMATATDGAQKKGAHAGNLIKAIAGLVGGGGG-GRPGMAQAGGKNPAGVEEALKK 877

Query: 892 VASFLKK 898
               +++
Sbjct: 878 AVEVVEE 884


>gi|294783331|ref|ZP_06748655.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480209|gb|EFG27986.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 867

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/909 (36%), Positives = 505/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y        + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKSSETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+V+FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEVSFKLYDTYGFPYELTEEIAEERGVT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYEKTEDEATLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H   +E+G      +  L ++   R   + NH+ATHLL
Sbjct: 504 IYSDNFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS +  D LRFD +H + +T+ +L  IE+ VN+ I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDSDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE
Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  +  +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDTEKS 737

Query: 774 HAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++             +I     +     +  + +L++++D ++   +  I++L 
Sbjct: 738 LETLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854

Query: 889 IAGVASFLK 897
           +  + + ++
Sbjct: 855 LKEIRATIE 863


>gi|262066712|ref|ZP_06026324.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379511|gb|EFE87029.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 867

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 512/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y  N+    + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKPNNFETDLLFPILEEAARITGSQYGKNSETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +      AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY+ ++    +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYENIQDEAKLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGR 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H   +E+G      +  L ++   R   + NH+ATHLL
Sbjct: 504 IYSDDFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + PD LRFD +H + +T+ +L  IE+ VN+ I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIEVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY + VRVV V        S+ LCGGTH+ +  +I L  IVSE
Sbjct: 623 HSIEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      + + LK +   LK S  NVV +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKETERE 737

Query: 774 HAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++             +I  V  +     +  +++L++++D ++   +  +++L 
Sbjct: 738 LETLKQKIALFETKAALSGMEEINGVKVLVAAFKDKKAEDLRTMIDTIKDNNEKAVVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG + +K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESKLLDA 854

Query: 889 IAGVASFLK 897
              + + ++
Sbjct: 855 FKEIRATIE 863


>gi|312880061|ref|ZP_07739861.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783352|gb|EFQ23750.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260]
          Length = 880

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 518/906 (57%), Gaps = 46/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + +R  FL +F++ G    PS SL+P +DPTL+FT +GMVPFK  F G + P     TT
Sbjct: 6   AAKLREQFLSYFEEKGSRRYPSFSLVP-DDPTLLFTIAGMVPFKPYFLGLKTPEVTRATT 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKCVR     ND+DNVGRT RHHTFFEMLGNFSFG YFK   I  AW  LT+   LD  
Sbjct: 65  AQKCVRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWTFLTERVGLDPN 120

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           R+Y TVY +D+EA  +W+   GL+AD++IR+   DNFW+    GPCGPCSE+ +DQG   
Sbjct: 121 RMYATVYRDDDEAADIWRNSVGLAADRVIRLGEEDNFWAAGPVGPCGPCSELLYDQGPAF 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +     +RY+EIWNLVFMQF +        LPK +IDTGMGLER+++V+Q+  
Sbjct: 181 SCGSPDCAPGCSCDRYLEIWNLVFMQFNRDEAGVLTPLPKKNIDTGMGLERLSSVVQQVK 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           ++++ DLF+ L+  +  + G+ Y     + +  RVI DHLR+++F+IADGILP+NEG GY
Sbjct: 241 SDFETDLFRPLVDKACSLAGVSYGAGPGSDLAVRVIADHLRATAFMIADGILPSNEGTGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA+ + RLL   EP ++ LLP +   +   Y EL++ +  I + +  E+ RFG
Sbjct: 301 VLRRLLRRAVRFGRLLDLREPFLLELLPQVEATLADPYQELLRYRSTIAQVVDLEERRFG 360

Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL++G  LL+  +  +     + L+G+VAF+LYDT+G P+++ +++    GL+ +D   
Sbjct: 361 RTLEQGSDLLEQEIGCTKRSGGKELSGEVAFELYDTYGFPVELTEEMCSEAGLS-VDQKG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F QA+E Q+ RARA S    +      +  L ++ G T F+GY+                
Sbjct: 420 FAQAMERQKERARASSKQTCATMGSNAYTELADRQGPTVFLGYE---------------- 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         V A+++ G +++ A  G+  EVV D+TPFYAE GGQ+GD G   G+
Sbjct: 464 -------MEEARGTVLALLRDGVLLDRAEEGETAEVVLDRTPFYAERGGQVGDQGTLSGE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+  ++ D       +  H   + +G+L    +L   +D   R  +  +H+ THLLH AL
Sbjct: 517 GLEAEVEDTVHPCGDLVAHRVRIRKGVLLPGATLEARVDGARRGDIRRHHTTTHLLHEAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
           + +LG HV Q GS ++P+GLRFD  H  P+T  +++ +ED VN+ + +NLPV TR  + E
Sbjct: 577 TQVLGDHVRQAGSLVSPEGLRFDYNHFAPLTPEQIQEVEDRVNEQVLKNLPVTTRETDLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A GA AL   KY +RVRVVSVE      +S+ LCGGTHV +TGEI L+ +  +  I 
Sbjct: 637 TAKALGAKALFEEKYGERVRVVSVEG-----YSTELCGGTHVCATGEIGLVKVHKDEGIG 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRI+A +G+ +          L+ + S L V    +  +   + EE++ L+    + 
Sbjct: 692 AGLRRIQATSGRASLRWSQEVSTVLRDVTSLLTVDPDALCEKTASLLEEHKALERKWRQA 751

Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            LQ  +  L        ++ DV  +     ++D+  L+ + D ++ +  S + +L   + 
Sbjct: 752 LLQTELMRLDAVVMGRKRVGDVEVVISFYEDLDTDLLRQIGDQVKGRFPSSVSVLATKNA 811

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           EK   V++   E +    +A  LA+    +LG   GGG+P MAQ GG         +  V
Sbjct: 812 EKFLVVIMATDEAVAKGVHAGKLAKSLGALLGC-NGGGKPQMAQVGGKFTTPLKGPLESV 870

Query: 893 ASFLKK 898
              + +
Sbjct: 871 PQMVAE 876


>gi|206889357|ref|YP_002248379.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741295|gb|ACI20352.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 875

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/908 (39%), Positives = 538/908 (59%), Gaps = 46/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F   GHEL+ SS LIP +DP+L+FTN+GMV FK +F G+E+  Y   
Sbjct: 1   MQSSEIRKLFLDYFVSKGHELVKSSPLIPKDDPSLLFTNAGMVQFKRVFLGEEQRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKH+DL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT+ F L 
Sbjct: 61  TTCQKCIRAGGKHSDLENVGFTARHHTFFEMLGNFSFGDYFKRDAILFAWELLTEHFKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L++++Y +D+EA ++W++  G+ +++I+R+   DNFW M +TGPCGPCSEI  DQGE
Sbjct: 121 KEKLWVSIYKDDDEAAEIWEEEIGIPSERIVRLGEKDNFWQMGDTGPCGPCSEIIIDQGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++E+WNLVFMQ+ +  + +   LPK SIDTGMGLER+  V Q 
Sbjct: 181 DFGCGQPDCSVGCDCDRFLELWNLVFMQYNRDEEGKLTPLPKPSIDTGMGLERITAVKQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K  N+D DLF+ +I        +KY  +    ++ +VI DH+R+++FL+A+G++P+NEGR
Sbjct: 241 KRTNFDTDLFEPIISEICSTLNVKYGKDRKTDISIKVIADHIRAATFLVAEGLIPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  + +LL Y +      +  +  ++G  YPE++  +  IE+ ++ E+ER
Sbjct: 301 GYVLRRIIRRAGRHIKLLEYDKTAFYRFVEPVVYKLGEVYPEIVSERERIEKIIKIEEER 360

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F ++L++   + D ++++L K   +++ G   FKLYDT GLP D+++++     L  ID 
Sbjct: 361 FLRSLEKAQQIFDDIINNLKKTDSKLIPGHEIFKLYDTFGLPFDLIKEMAQDSEL-QIDE 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           I F Q L +QR RARA       G  E ++  L+ +    +FIGY               
Sbjct: 420 IGFQQELNKQRERARAAQKSEEVGIGE-VYKQLRPQSENLRFIGYTDYET---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + AIV+  E V E    ++ E+   +TPFYAE+GGQ+GDTG  I
Sbjct: 469 -------------ETDIYAIVKNSERVNELNKDEEGEIFLFKTPFYAESGGQVGDTGMII 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  + ++ D  KK  G+  H   V  G ++    +   ID + R+ +  NH+ATHLLH 
Sbjct: 516 SNSGKAEVYDT-KKISGLHCHKVRVIEGTIKEGDKVFAKIDLERRKAIKRNHTATHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG HV Q GS + PD LRFD TH + +   EL+ IE  VN+ I +NLPV   I +
Sbjct: 575 ALRTVLGEHVKQAGSLVAPDRLRFDFTHFEAVNDEELREIERIVNEKILENLPVKIEIKS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+  G  AL   KY D VRVV +        S  LCGGTH  STGEI   YIVSE S
Sbjct: 635 LDEALNEGVTALFEDKYEDTVRVVKIVG-----FSKELCGGTHCDSTGEIGSFYIVSEGS 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +GIRRIEA+TG  A  +     E+LK+++S LK      V  VE +  E ++ Q    
Sbjct: 690 VASGIRRIEAVTGIEAFKYSNINREQLKAISSILKS--AEPVKAVERLVAELKEKQQEIE 747

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K +L  +++        +I  V  ++  +  VD K L+++ D L++K+   II+L+  
Sbjct: 748 VLKNKLISQNIEEIVKQAKEIDGVKALAVKLDGVDLKSLRTLSDKLKEKLHPAIILLIS- 806

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             + +  +L+ VT+D+ ++++A  L R   + + GG GGGR   AQ G P+G   ++   
Sbjct: 807 KADGQGILLLSVTKDITNKYDAGKLMRNIVQAV-GGKGGGRQETAQGGCPDGESLEKVSE 865

Query: 891 GVASFLKK 898
              S ++K
Sbjct: 866 IFYSLIEK 873


>gi|323464290|gb|ADX76443.1| alanyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 876

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/909 (39%), Positives = 515/909 (56%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +  
Sbjct: 6   ASDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT      ++
Sbjct: 66  AQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSERWMAME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA+ LW  + GL+ D+IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PEKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                          E ERY+E+WNLVF +F          LP  +IDTGMGLERM ++ 
Sbjct: 179 AYGQDDSAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLERMTSIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+   NY+ DLF  +I   E ++G KY  + +N V  +VI DH+R+ +F I+DG LPANE
Sbjct: 239 QDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I   ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL+ GL +L+ ++      +E + G+ AFKLYDT+G P+++ ++I    GLA ID
Sbjct: 359 ERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEGLA-ID 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + SFN  +E QR RAR       S   +     LKE    ++F+GY+             
Sbjct: 418 MDSFNDHMEAQRDRARKARQSSQSMQVQSEV--LKEINTVSKFLGYEAFETH-------- 467

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  IV+ GE V  A +G+ +  + DQTPFYA +GGQ+ D G  
Sbjct: 468 ---------------AKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQVADKGTV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 +Q+T+V K   G  +H  +V+ G +R    +  TID Q R  +  NHSATHLLH
Sbjct: 513 SNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +  D LRFD +H  P+T+ E+K +E  VN+ I  ++PV  + M
Sbjct: 573 AALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIPVEIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N EDA A GA AL G KY D VRVV+++       S  LCGGTHV +T EI L  I SES
Sbjct: 633 NIEDAKAKGAMALFGEKYGDIVRVVNMQP-----FSIELCGGTHVRNTSEIGLFKITSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773
              AG+RRIEA+TGQ A  +L    ++   L   +K      V+ +VE++    + L+  
Sbjct: 688 GTGAGVRRIEAVTGQNAFLYLEHYLDQFNVLKQQVKAKSDAQVIEKVEQLQYNEKTLKQT 747

Query: 774 HAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828
              +   LN   +     ++  +N MS +I+EV   ++K +++ MD  + K+Q  II+L 
Sbjct: 748 IEDKNKALNELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKLQDSIIVLA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S++  V + L DR  A D+ +  A V+ GG GGGRP MAQ GG    K  +A
Sbjct: 808 S-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGTEPGKITEA 865

Query: 889 IAGVASFLK 897
           +  + +++K
Sbjct: 866 LQFIKNYIK 874


>gi|225572273|ref|ZP_03781137.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040257|gb|EEG50503.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM
           10507]
          Length = 868

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/900 (39%), Positives = 515/900 (57%), Gaps = 48/900 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FLEFF+  GH  L S SLIP ND +L+  NSGM P K  FTG E P  + VTT QKC+R
Sbjct: 1   MFLEFFESKGHLALKSFSLIPQNDKSLLLINSGMAPMKPYFTGAEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+   LD  RLY ++
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPDRLYPSI 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y +DEEAF++W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE      PG
Sbjct: 117 YLDDEEAFEIWNKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKYGCKKPG 175

Query: 190 SS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            +   + +RYIEIWN VF QFE   +     L + +IDTGMGLER+ATV+QE  + +D+D
Sbjct: 176 CTVGCDCDRYIEIWNNVFTQFENDGEGHYTELEQKNIDTGMGLERLATVVQEVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
               L     ++ G++Y  +    V+ R+I DH++SS+F+I+DGI+P NEGRGYVLRR++
Sbjct: 236 TNCALRNRVCELAGVEYLKDEKTDVSIRLITDHVKSSTFMISDGIMPTNEGRGYVLRRLI 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     M  L   +       YPEL + K  I   L +E+ +F KT+D+G
Sbjct: 296 RRAARHGRLLGIDGKFMAKLSATVIEGSKDGYPELEEKKDFIFNVLNNEENQFNKTIDQG 355

Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   + K   ++L G+ AFKLYDT+G PLD+ ++IL  +G   +D   F +A+E
Sbjct: 356 LRILADLEEKMEKAGTKVLTGEEAFKLYDTYGFPLDLTKEILEEKG-RQVDEEGFQKAME 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            QR +AR           +   +   +    T+F+GY+ L                    
Sbjct: 415 IQRKQAREAREVSNYMGADATVYDEIDPSVTTEFVGYEHLA------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  +  + EIV   + GQ+  V   +TPFYA  GGQ GDTG         Q+
Sbjct: 456 ----FESEITVLTTEKEIVSSLMEGQRGTVFVKKTPFYATMGGQEGDTGLISTANGVFQV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +  K   G + H   +  G+L  +  + L ++ Q RR    NHSATHLL  AL  +LG+
Sbjct: 512 EETIKLRGGKYGHVGHMVSGMLSVQDVVRLEVNVQGRRDTEKNHSATHLLQKALKVVLGA 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +TPD LRFD  H + +T  E++ +E  VN  I + LPV T IM+ E+A  +G
Sbjct: 572 HVEQKGSLVTPDRLRFDFAHFQAMTPEEMEKVEKLVNQEIQEALPVRTDIMDIEEAKKTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY++ VRVVS+     G  S  LCGGTHVS+T +I+L  +VSES I AG+RRI
Sbjct: 632 AMALFGEKYDEEVRVVSM-----GEFSKELCGGTHVSNTSQILLFKLVSESGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     +    +  L   A   K S G +  ++  +  E + L   +   K ++  
Sbjct: 687 EALTGNGVMEYYKNLESLLNQAAKAAKTSTGELSDKIFHMQNEIKALHSENESLKSKMAQ 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        ++  V  ++  +  VD   L+ + D L++K++ G+++L+ ++   K ++
Sbjct: 747 DSLGDVMNQVTEVKGVKLLAVKLENVDVSGLRDLGDQLKEKLEEGVVVLITVNS-GKVNL 805

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L + T+  +    +A +L + +A ++GGGGG GRP+MAQ+GG +  K ++A+  +   L+
Sbjct: 806 LAMATDGAMKQGAHAGNLIKAAAAIVGGGGG-GRPNMAQAGGKSPEKVEEALQKIPEILE 864


>gi|299535706|ref|ZP_07049027.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298728906|gb|EFI69460.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 886

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/924 (36%), Positives = 510/924 (55%), Gaps = 68/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 1   MKAVDIRRMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K   
Sbjct: 61  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 117 FDPALLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 173

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G                E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 174 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--------------RVIVDHLRS 281
           V+Q    N+D DLF  +I+  E+    KY+    V+               +VI DH+R+
Sbjct: 234 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPGEVDLNEIFGSEEDINTPFKVIADHIRT 293

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ 
Sbjct: 294 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 353

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           +    I+  +++E+ RF +TLD GL + + V+        + + G  AF+LYDT+G P++
Sbjct: 354 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVVESQKAAGHDYIPGADAFRLYDTYGFPIE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F +A+EEQR RARA    + S   +     L     A++F+G
Sbjct: 414 LTEEYAEEVGMK-VDHEGFEEAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L                        V++ + A++  G++ + A  GQ+  V+  +TP
Sbjct: 471 YDTL-----------------------TVNTEIAAMIVNGQVAKVASEGQEALVILAKTP 507

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ D+G    D     + DVQK   G  +H  +VE G +  E ++   ++  +
Sbjct: 508 FYAEMGGQIADSGTISNDSFTAVVKDVQKAPNGQPLHTVVVESGEMHVEDAVQAVVNRDD 567

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  V
Sbjct: 568 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 627

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ +  ++ VV      ++A A GA AL G KY D VRVVS+     G +S  LCGG HV
Sbjct: 628 NEKVWDDIEVVIEEKGIDEAKAMGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 682

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +
Sbjct: 683 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEAVKEEEALLNDAAALLKANAKDIVTK 742

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMD 814
           V+ +  +Y++LQ  +     ++          +   I DV  +S  +   D+ +L+ +MD
Sbjct: 743 VQALQADYKELQRENEALSQKIANAQAGAIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMD 802

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L+ K+   +I+L  +  + K  +   V+++L+   ++A ++ ++ A+   GG GGGRP 
Sbjct: 803 DLKAKMPKAVIVLGAVDGD-KVMLCAGVSKELVGGNYHAGNIVKMVAEAC-GGKGGGRPD 860

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MA +G  + +K D+A+  V  ++K
Sbjct: 861 MAMAGAKDASKLDEALLSVYDYVK 884


>gi|294501349|ref|YP_003565049.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351286|gb|ADE71615.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 877

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/911 (39%), Positives = 521/911 (57%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+FF++ GH++ PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRIC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +TV+ ED+EAFK+W +  G+  ++IIR+    NFW + E GP GP +EIF+D+G
Sbjct: 121 DADKLSVTVHPEDKEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E     L         E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDLNDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I+A+E ++G KY  N+      +VI DH+R+ +F + DG LP+N
Sbjct: 238 IQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ L    P M  L+P +   M   YPE+ +    I+  +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRVVKNE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L  V+        + + G+  F+LYDT+G P+++ ++      +  
Sbjct: 358 EERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDENMK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F + +E QR RARA      S   +     L E   A++F+GYD           
Sbjct: 417 IDHAGFEREMEAQRERARAARQDSSSMQVQG--GVLGEVTVASEFVGYD----------- 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N V ++V+AI+  GE+V+ A +G + +V+   TPFYAE+GGQ+ D G
Sbjct: 464 ------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQIADQG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ DVQK   G  V    V  G L        T+D +NR  +  NH+ATHL
Sbjct: 512 TIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGEIYTATLDEENRSAIVKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG+HV+Q GS +T D LRFD +H   +T  EL+ IE  VN+ I  ++ V   
Sbjct: 572 LHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSISVQIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               ++A A GA AL G KY D VRVV V     G +S  LCGG HV +T  I L  IVS
Sbjct: 632 NKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG+ A   +  Q   LK  A+ +K +  ++VGRVE + EE R LQ 
Sbjct: 687 ESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEIRNLQR 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L   +          I  VN ++  ++  D   L++++D L++K++S +I+L
Sbjct: 747 ENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLESAVIVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                E K +++  VT+DL+ +  +A  L +  A + GGGGG GRP MAQ+GG + ++ +
Sbjct: 807 ASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGGG-GRPDMAQAGGKDASQIE 864

Query: 887 QAIAGVASFLK 897
           +A+  V  ++K
Sbjct: 865 KALGTVEEWVK 875


>gi|309389100|gb|ADO76980.1| alanyl-tRNA synthetase [Halanaerobium praevalens DSM 2228]
          Length = 877

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/911 (39%), Positives = 542/911 (59%), Gaps = 50/911 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + +   IR  +L+FF+  GH +L S+ LIP +DPTL++ N+GM PFK  F G  +P    
Sbjct: 2   IKSGDEIRQAYLDFFESKGHLILDSAPLIPKDDPTLLWINAGMAPFKPYFNGSLEPPKTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           ++T QKC+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE AI  AW+ +T+  +L
Sbjct: 62  ISTSQKCIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEEAISWAWEFVTEVLEL 117

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL+IT+Y+EDEEAF +W    GL  ++I+R+   +NFW +  TGPCGPCSEI +D+G
Sbjct: 118 EEDRLWITIYEEDEEAFAIWHDKVGLDEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRG 176

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                        EG+RY+EIWNLVF Q+      E   LP  +IDTGMGLER+A++LQ 
Sbjct: 177 PEAGESEEDVLGGEGDRYLEIWNLVFTQYNYTEAGEYQELPNKNIDTGMGLERVASILQA 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL K LI    +++G+ Y+ +   + ++RVI DH+RS+S  I+DG LP+NEGR
Sbjct: 237 TETNFETDLIKPLIDQVVEMSGIDYQKDEQSLTSYRVIADHIRSASVAISDGALPSNEGR 296

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA  Y R LG+ EP +  L+      + +  P+L +    ++  ++SE++ 
Sbjct: 297 GYVIRRLIRRAARYGRKLGFKEPFLYQLVEKTAEIVAAVAPDLKKQLAHVKNVIKSEEKS 356

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL++GL +L+ +L++L     E+++G  AF+LYDT+G PLD+ +DI    G+  +D 
Sbjct: 357 FLQTLEQGLNILEDILNNLKAENKEVISGQDAFRLYDTYGFPLDLTEDIAAEEGIK-VDQ 415

Query: 416 ISFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
             F + +E QR RAR         +G  EKI+   +++  A  F GY  L+         
Sbjct: 416 KGFEKEMEAQRKRAREARAETSFNNGEIEKIYAEYQDQIEARNFTGYHSLQ--------- 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + +  +V+  +  +   +G K E++  +TPFYAE+GGQLGD G 
Sbjct: 467 --------------AKAQIVGLVKAEKAQKSLKAGDKAEIILTKTPFYAESGGQLGDKGV 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ D  KKAE +FVH   V++G +     +   + +  R   + +HSATHLL
Sbjct: 513 IKNDQFEAEVKDTVKKAE-VFVHQVEVKKGKIEVGEEVTAVVYHNRREATARHHSATHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q+GS + PD LRFD TH   ++S EL+ +E  VN  I +N PV T I
Sbjct: 572 HKALKEVLGEHVNQSGSLVAPDRLRFDFTHFSALSSQELEELERKVNKAIRENYPVETEI 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              ++A   GA AL G KY   VRVV +     G  S  LCGGTHV +TG+I    I++E
Sbjct: 632 KAIDEAKDMGATALFGEKYGQEVRVVKM-----GDFSLELCGGTHVRATGDIGAFKIINE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+TG+ A  +   + E L  LA+ LK    N++ RV+++ +E ++L+  
Sbjct: 687 SGIAAGVRRIEAVTGEYALDYFNSKLELLNQLAAELKTDPNNLLQRVKQVKKEQKELEKE 746

Query: 774 HA--KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K KL  + +D       ++A +N ++  + ++D+  L+++ D L+ KI SGII+L 
Sbjct: 747 LETMKEKLAGSKKDDLIDQLEEVAGINLLTAELEDLDNSALRNLTDQLKDKIDSGIIVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
               E K   +  V+EDL+ + F A ++    AK+ GGGGG GRP MAQ+GG        
Sbjct: 807 S-KGENKVIFVASVSEDLIAKGFKAGNIIAQVAKIAGGGGG-GRPDMAQAGGSKPENTSA 864

Query: 888 AIAGVASFLKK 898
           A+A V + +K+
Sbjct: 865 ALAEVKNIIKE 875


>gi|172058083|ref|YP_001814543.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|205830090|sp|B1YJE5|SYA_EXIS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171990604|gb|ACB61526.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 880

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/911 (38%), Positives = 524/911 (57%), Gaps = 57/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FFQ  GH + PS+SL+P  DPTL++ NSG+   K  F G+  P    + 
Sbjct: 8   TGAQIRQMYLDFFQSKGHAIEPSASLVPIEDPTLLWINSGVATLKKYFDGRVIPQNPRIV 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E AI+  W+LLT  + + L
Sbjct: 68  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFREDAIKWGWELLTSDEWYGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL +T++ ED+ A ++W ++ G+ A++II +   DNFW + E GP GP +EIFFD+G
Sbjct: 124 DPDRLSVTIHPEDDAARQIWLEL-GVPAERIIPL--EDNFWEIGE-GPSGPNTEIFFDRG 179

Query: 181 ECIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                    S      E ERY+EIWN+VF Q+          LP+ +IDTGMGLERMA+V
Sbjct: 180 PAFGDDPNDSELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASV 239

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  +I  +E+++G +Y  +    V  +VI DH+R+ +F I DG LP+N
Sbjct: 240 MQDVPTNFDTDLFMPIIHKTEEISGKRYREDTKLDVAFKVIADHIRTVAFAIGDGALPSN 299

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA++LG   P M  L+  + + M   YP++ +    I+  +++E
Sbjct: 300 EGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDTVGSVMVDFYPQVPEKADFIKRVIKNE 359

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL  GL +L+ V      +   I++G+ AF+LYDT+G PL++  +      ++ 
Sbjct: 360 EERFHETLHDGLAILNTVAQAAKNNGEHIISGEDAFRLYDTYGFPLELTVEYAEDHQMS- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A++EQR RARA     GS   +     L      +QF+GY  L         
Sbjct: 419 VDEEGFKRAMDEQRKRARAAREDGGSMQQQSEV--LATLTVPSQFVGYTDLEAD------ 470

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + + A++  GE V E  +G++ +++ D TPFYAE+GG++ D+G
Sbjct: 471 -----------------AKIIALLHDGERVTEVAAGEEAQLLLDVTPFYAESGGEVADSG 513

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G    L + DVQK   G  +H  +V  GI   + S+   ++  +R+ ++ NH+ATHL
Sbjct: 514 TITGPDFVLDVKDVQKAPNGQNLHTVVVRTGIALADASVHAAVEASSRQAITKNHTATHL 573

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG+HV+Q GS ++ + LRFD +H   +T+ EL +IE +VN  I  +L V   
Sbjct: 574 LHKALKDTLGTHVNQAGSLVSAERLRFDFSHFGAVTAEELATIEQDVNQAIWASLAVEIE 633

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            MN  DA A GA AL G KY + VRVVS      G +S  LCGG HV +T EI L  IVS
Sbjct: 634 EMNIADAKAKGAMALFGEKYGETVRVVS-----AGTYSIELCGGIHVRNTAEIGLFKIVS 688

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AG RRIEA+TG  A   + G  + L+  A  LK     V GR+E +  + R+ + 
Sbjct: 689 ESGIGAGTRRIEAVTGAGAYHVMNGHLQTLEQAARVLKTKTTEVPGRIEALQVQLRETER 748

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            H   + +L   +         +I  V  ++  +   D   L+ +MD L+  + S II+L
Sbjct: 749 AHESLQAKLANIEAASLKDDVEQINGVQVLAKQVDVSDMDALRGMMDELKSSLGSAIIVL 808

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G ++  K +++  V++DL+D  ++A  L +  A   GGGGG GRP MAQ+GG +  K +
Sbjct: 809 -GSAQGDKVNLVASVSKDLIDQGYHAGKLIKEVATRCGGGGG-GRPDMAQAGGKDPAKLN 866

Query: 887 QAIAGVASFLK 897
           +A+A  + +++
Sbjct: 867 EALAFTSHYVQ 877


>gi|312143796|ref|YP_003995242.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904447|gb|ADQ14888.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 877

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/911 (38%), Positives = 530/911 (58%), Gaps = 50/911 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +     IR  +L+FF+   H +L S+ L+P NDP+L++ N+GM PFK  F G  +P +  
Sbjct: 2   IKTGDEIRQAYLDFFESKDHLVLDSAPLVPKNDPSLLWINAGMAPFKAYFDGSLEPPHPR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T QKC+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI  AW+ +T+  + 
Sbjct: 62  IATSQKCIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEKAIIWAWEFVTEVLEF 117

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ RL+IT+Y +D+EA  +W+K  GL  ++I+R+   +NFW +  TGPCGPCSEI +D+G
Sbjct: 118 EEDRLWITIYKDDDEAHDIWQKKVGLPEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRG 176

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                        EG+R++EIWNLVF Q+      E   LP  +IDTGMGLER+A++LQ 
Sbjct: 177 IEFGDSSEDVLGGEGDRFLEIWNLVFTQYNYTEAGEYKELPNKNIDTGMGLERVASILQN 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
              N++ DL K +I      TG+ Y+ ++     +RVI DH+RS +  I+DG LP+NEGR
Sbjct: 237 TKTNFETDLIKPIIDEVVAKTGIAYQKDDESQTAYRVIADHIRSVAVAISDGALPSNEGR 296

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA  Y R +G+TEP +  L+      +    P+L Q    +E  ++SE+E 
Sbjct: 297 GYVIRRLIRRAARYGRKIGFTEPFLYELVKTTAEVVKGVAPDLKQQLAHVENVIKSEEES 356

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTL++GL +L+  L  L     E+L+G  AF LYDT+G PLD+ +DI    G+  +D 
Sbjct: 357 FLKTLEQGLNILEDFLVDLKAENKEVLSGKNAFILYDTYGFPLDLTKDIASEAGIM-VDE 415

Query: 416 ISFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
             F   +  QR RAR         SG  +K++ S K +  A +F GY  L          
Sbjct: 416 EGFEAEMAAQRKRAREAREETSFSSGEIDKLYASFKAEVEAVEFTGYHSL---------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V  IV++ + ++    G++  +V  +TPFYAE+GGQLGD G 
Sbjct: 466 -------------TEESEVVGIVRENQKLQSIKKGEEANLVLHKTPFYAESGGQLGDKGI 512

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++ +   +A+ + VH   VE+G L+   S+   +    R+  + +HSATHLL
Sbjct: 513 IKNENFEAKVLNTFARAK-LPVHKVKVEKGELKRGDSVKAVVYDDRRKATARHHSATHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H  L  +LG HV+Q+GS + P+ LRFD TH   ++  EL  IE  +N  + +N PV T  
Sbjct: 572 HKTLKEVLGEHVNQSGSLVAPEKLRFDFTHFSALSDQELNEIEKRINKAVMENYPVETEE 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A A GA AL G KY++ VRVV +     G +S  LCGGTHV +TG+I    I+SE
Sbjct: 632 KALEEAKAMGAEALFGEKYDEEVRVVKM-----GDYSLELCGGTHVDATGDIGPFKIISE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S I AG+RRIEA+ G+ A  +   + + L   A+ LK     V  R++++ +E ++LQ  
Sbjct: 687 SGIAAGVRRIEAVVGEFALDYFNEKVDILNQAAAELKTEPDQVADRIKDLQKEKKELQKE 746

Query: 774 HA--KRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K+KL  + +D    K   +A +N ++  +SE+D++ L++++D L+ K+ S +I+L 
Sbjct: 747 LQSLKQKLAGSKKDELLDKLKNVAGINVLTAELSELDNQGLRNLIDQLKDKLDSAVIVLA 806

Query: 829 GISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
               + K   +  VT DL++  F+A  +    A+V GGGGG GRP MAQ+GG   +K   
Sbjct: 807 S-KGQNKVVFVASVTADLIEQGFHAGKIISEVAQVAGGGGG-GRPDMAQAGGSKVDKTAA 864

Query: 888 AIAGVASFLKK 898
           A+A V   +KK
Sbjct: 865 ALAKVEEIIKK 875


>gi|237744281|ref|ZP_04574762.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431510|gb|EEO41722.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 867

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/909 (37%), Positives = 514/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLKNIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDDFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLKVDIVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
           S I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  + +
Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIERKLKATNSNLIEKVEKTLETLKDTEKE 737

Query: 772 LIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K+KL L           +I     +     +  +++L++++D ++ + +  II+L 
Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGTKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            I    K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 SIQ--DKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRDIIE 863


>gi|239908964|ref|YP_002955706.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|239798831|dbj|BAH77820.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 880

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/898 (41%), Positives = 525/898 (58%), Gaps = 40/898 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FLE+F   GH+++ SS L+P  DPTL+FTN+GMV FK +F GQ+KP Y  
Sbjct: 1   MMTATEIRAKFLEYFASKGHQVVASSPLVPREDPTLLFTNAGMVQFKKVFLGQDKPGYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI  AW+ LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAITFAWEFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EA  LWKKI+GLS ++I R+   DNFWSM +TGPCGPCSEI +D+G
Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLSDERIFRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180

Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G      + + +RY+EIWNLVFMQF+Q     R  LP+ SIDTGMGLER+A V+Q
Sbjct: 181 EEVGCGPNCGIGTCDCDRYLEIWNLVFMQFDQIEPGNRVALPRPSIDTGMGLERIAAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DIDLF+ +I ++ Q+ G+ Y  N+      RVI DH RS +FL+ADG++P+NEG
Sbjct: 241 GVHSNFDIDLFQTIISSAAQIAGVTYGDNDEHDTALRVIGDHSRSVAFLLADGVMPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +L+G ++P +      +   MG AYPEL+ ++  +E  +R E+E
Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLYKTAGVVVDVMGPAYPELVASREFMERVVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+GL +L   L  +    +  + G+ AFKLYDT+G PLDI+ D+   RG+A  D
Sbjct: 361 RFGVTLDKGLAILAEELDRMAAAGETTITGEFAFKLYDTYGFPLDIVNDVAGKRGMAA-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              +   + EQ++RA+    G G      ++  L E    ++F GY  L           
Sbjct: 420 EDGYRVCMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFTGYTEL----------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S +   I  +G+ VE  ++G+   +V   TPFY E+GGQ GD G  
Sbjct: 469 -----------TAKSRVNALISAEGQAVERLIAGETGYMVSAVTPFYGESGGQAGDVGTV 517

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + +    K    +  HH  V++G +  +    L +D   R   + NH+ THLLH
Sbjct: 518 TTLTGDVAVLGTMKAGPELTAHHIQVQKGEILLDQEAELVVDAAVRAATARNHTCTHLLH 577

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +TPD LRFD +H   +T+ EL  +ED VN  I  + PVV   +
Sbjct: 578 KALKNVLGGHVNQAGSLVTPDRLRFDFSHVSAMTAEELARVEDEVNAAILLDAPVVVEEL 637

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A A GA AL G KY D V        +    S  LCGGTH+ +TG+    YI+SES
Sbjct: 638 GIEAARAKGATALFGEKYGDVV-----RVVEVPGVSMELCGGTHIGATGQAGSFYILSES 692

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG RRIEA+TG  A  H+     +L      +K   G +  RV+++ +E + L    
Sbjct: 693 GVAAGTRRIEAVTGVNALRHVREMRGELDEALKTVKAKPGELGARVKKLLDEIKALGKDK 752

Query: 775 AKRKLQLNVE---DLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   +L      DL     +I  V  +   +     K ++  MD L+ K+ SG++ +  
Sbjct: 753 EQLAAKLASGQGRDLMAGLEEIGGVKVLCARVDAPSVKAMREAMDDLRSKLPSGVVAIAS 812

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  K S+++ V++DL DRF A  L + +A  +GG GG GRP MAQ+GG N    D+
Sbjct: 813 EQEGGKVSLIVAVSKDLHDRFTAPTLIKDAAAAVGGSGG-GRPDMAQAGGTNPAGIDE 869


>gi|329767041|ref|ZP_08258569.1| alanyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328837766|gb|EGF87391.1| alanyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 873

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/905 (36%), Positives = 514/905 (56%), Gaps = 55/905 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF + GH++ PS+SL+P +DPTL++ NSG+   K  F G+E P    +T
Sbjct: 5   TSTQIRRMYLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGREIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT  K   L
Sbjct: 65  NSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +T++ ED EA+ LW  + GL  D+IIRI    NFW + E GP GP +EIF+D+G
Sbjct: 121 EKEKLSVTIHPEDTEAYDLWHNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 E----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E      P        E +RY+E+WN+VF Q+          LP  +IDTGMGLER+ +V
Sbjct: 178 EDADTWSPKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLERIVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+   N+D DLF  +I+  E+++G KY       V  +VI DH+R+ +F IADG LP+N
Sbjct: 238 LQDVPTNFDTDLFIPIIREIEKLSGAKYGVNAEQDVAFKVIADHIRTVAFAIADGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++LG  +  M  L   +   M   YP + ++   +++ +  E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLGLNKSFMYKLTDVVAEIMEDYYPNVKESANFVKDVILKE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++RF +TL+ G  +L+ +   +    ++++G  AFKLYDT G P+++ ++     GL  +
Sbjct: 358 EDRFHETLNEGEAILNNIAKEVKDTTKVISGKDAFKLYDTFGFPIELTEEYAEELGLT-V 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           DI  FN+ +E+Q+ RAR+      S   +   ++     G ++F GY  L          
Sbjct: 417 DIDGFNEEMEKQKERARSSRQEDSSMQVQSDLYN--RIVGDSEFTGYTKLTD-------- 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTG 532
                             + AIV + + + E   G++ V+VVFD+TPFYAE+GGQ+ D G
Sbjct: 467 ---------------EGKLLAIVDKDDNLLENYKGEENVKVVFDKTPFYAESGGQVADRG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +G + ++ DV+K  +   +H   V  G L       L +D   R  +  NH+ATHL
Sbjct: 512 LVLAEGFKAEVIDVKKLPDKRHIHLVKVLEGELVVGKEYKLEVDRAYRLNIEKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I   L + T 
Sbjct: 572 LNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALEIKTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH +++ E+ +  IVS
Sbjct: 632 EMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSAEVGIFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG+ A  +L  Q+E L+S+    K +  NVV +V  +  E +KL  
Sbjct: 687 ESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANVSNVVEKVSGLQSEIKKLAK 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                + ++   +L     +  ++  VN ++ ++   +   LK ++D  + K+++ +I  
Sbjct: 747 EKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKLENYVIAF 806

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  E K + ++ V + + D++NA  L  + A  +  G GGGRP MAQ+G  N +  D+
Sbjct: 807 ASV-NEDKVNFVVAVDKAITDKYNAGKLVNVLA-TVCDGRGGGRPDMAQAGAKNKDNIDK 864

Query: 888 AIAGV 892
           A   +
Sbjct: 865 AFEEL 869


>gi|289550615|ref|YP_003471519.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289180147|gb|ADC87392.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 876

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 499/915 (54%), Gaps = 57/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW    GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPDKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAFGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  +I+  E+V+G KY       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVAQNVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  GL +LD +++      + +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLQEGLSILDQLIAKAKLTTKEINGSDAFKLYDTYGFPIELTEEIATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D+ +F   +++QR RAR       S   +     LK     ++F+GY+        
Sbjct: 414 IT-VDMETFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITTKSKFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++  G+ V  A +G  +  V  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H   V+ G +     +   ++   RR +  NHSA
Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTVQFGHVTVNSHVDANVNKDERRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T+ E++ +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNMAP-----FSLELCGGIHVQNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           I+SES   AG+RRIEA+TG+ A  +L G   K     ++LKV   + V+ +V ++ EE +
Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQHKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +     +R      L++   +    +I     ++  +   + K ++  MD  + K+Q  
Sbjct: 743 HVNKQLEQRNKEITTLKMGNIEDQVEEINGFKVLATQVDIANPKAIRETMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L+    E K S++  V +    +  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILISEV-EGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLKK 898
              +++  +  ++KK
Sbjct: 861 NITESLRFIKDYIKK 875


>gi|226323189|ref|ZP_03798707.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758]
 gi|225208379|gb|EEG90733.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758]
          Length = 855

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/887 (37%), Positives = 499/887 (56%), Gaps = 46/887 (5%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R G    D++NVG+
Sbjct: 1   MKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIRTG----DIENVGK 56

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142
           T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +VY++D+EA+K+W +
Sbjct: 57  TARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSVYEDDDEAWKIWNE 116

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS--EEGERYIEI 200
             G++ ++I R    DNFW     GPCGPCSEI++D+GE    G PG +   E +RY+EI
Sbjct: 117 EIGIAPERIFRFGKEDNFWEHGS-GPCGPCSEIYYDRGEKYGCGKPGCTVGCECDRYMEI 175

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WN VF QF+         L + +IDTGMGLER+A ++Q+  + +DID  K L     ++ 
Sbjct: 176 WNNVFSQFDNDGHGNYSELKQKNIDTGMGLERLACIVQDVDSMFDIDTLKALRDQVCEIA 235

Query: 261 GMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           G+ Y  N    V+ RVI DH+RS SF+I+DGI+P+NEGRGYVLRR++RRA  + RLL   
Sbjct: 236 GVSYGDNESTDVSLRVITDHVRSVSFMISDGIMPSNEGRGYVLRRLLRRACRHGRLLNIA 295

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
              +  L   +       YPEL + K  I   +R E+E+F KT+D+GLV+L+ +   + +
Sbjct: 296 PGFLTDLAATVIEGSKDGYPELEEKKDFIMNVIRKEEEQFEKTIDQGLVILNEMKEKMAE 355

Query: 379 D--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
           +  + L+G+ AFKLYDT+G P+D+ ++IL   G+       F  A+E QR  AR      
Sbjct: 356 EGTKTLSGEDAFKLYDTYGFPIDLTKEILEEEGIDID-EEGFKAAMEVQRQTARKARKAT 414

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
                +   +   +    ++F+GY+ L                          S +  + 
Sbjct: 415 NYMGADATVYESIDPSVTSKFVGYEHLEY-----------------------ESKITVLT 451

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
            + EIV+    G++  +  D+TPFYA +GGQ  D G          + DV+K   G   H
Sbjct: 452 TEDEIVDALSDGERGTIFVDETPFYATSGGQEADHGVIKCGDGEFVVEDVKKMLGGKIGH 511

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              + +G+++    + LT+D Q R   + NHSATHLL  AL T+LG+HV Q+GS +    
Sbjct: 512 IGYMAKGMMKVGDQVTLTVDSQRRVLCARNHSATHLLQKALRTVLGTHVEQSGSYVDDKR 571

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           LRFD +H   +T  EL+ +ED VN+ I+++LPVV + M  E+A  +GA AL G KY D V
Sbjct: 572 LRFDFSHFSAMTPEELQKVEDMVNESISRSLPVVIKNMPIEEARKTGAQALFGEKYGDIV 631

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV++     G +S   CGGTHV++T EI    I+SES + AG+RRIEA+T +    +  
Sbjct: 632 RVVNM-----GDYSIEFCGGTHVANTSEIGAFKILSESGVAAGVRRIEALTSKGLMDYYG 686

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKI 791
             ++ L   A  LK +   V  ++  +  E ++L       K +L  + +        ++
Sbjct: 687 ELEQLLHEAAKLLKATPDTVSEKIAHLQAENKELHSEVESLKSKLAKDAMGDVMDQVEEV 746

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           A V  ++  + ++D   L+ + D L++KI  G++++   +  K + +     E +    +
Sbjct: 747 AGVKVIAVSVEDMDMNGLRDLGDQLKEKIGEGVVVIASSANGKVSLMATATDEAMKKGAH 806

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           A +L +  A  +GGGGG GRP+MAQ+GG N      A+A V   L +
Sbjct: 807 AGNLIKAIASCVGGGGG-GRPNMAQAGGKNPAGIPDALAKVKEVLAE 852


>gi|224372192|ref|YP_002606564.1| alanyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|223588444|gb|ACM92180.1| alanyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 853

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/906 (39%), Positives = 538/906 (59%), Gaps = 67/906 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FLEFF+  GH++ PS+ L+P +DPTL+FTN+GMVPFK IFTG++  P      + 
Sbjct: 2   DIRKKFLEFFESKGHKVYPSAPLVP-DDPTLLFTNAGMVPFKPIFTGEKPAPEPPRACSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI  AW+ +T+  +L + +
Sbjct: 61  QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPKEK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L+IT+++ D+EA K+W+K   +  ++I+++   DNFW M +TGPCGPCSEI FDQG +  
Sbjct: 121 LWITIHESDDEAGKIWEKY--VPKERIVKMGDKDNFWQMGDTGPCGPCSEIHFDQGADKF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+ +    +   LPK SIDTGMGLER+  + +  T+N
Sbjct: 179 NSPEDYLGGDGDRFLEIWNLVFMQYNRDESGKLTPLPKPSIDTGMGLERITAIKEGVTSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           YD  +F+ L++   ++TG +Y  +    +HRVI DH+R+ +FL A G+  + EGRGYVLR
Sbjct: 239 YDSSIFRPLLEKIVEITGKEYHTDKRGASHRVIADHIRAVTFLTAQGVQFSREGRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RR + +  LLG  EP M  ++  L  +MG  YP L++ K  +++T++ E+ERF +T+
Sbjct: 299 RILRRGVRHGYLLGMREPFMYKIVDTLAEQMGEQYPYLLEKKESVKDTIKLEEERFFETI 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           D+G+ L +  L     D   +G+VAFKLYDT+G PLD+ QD+L       +D+ +FN  +
Sbjct: 359 DKGMQLFEEELKKTTGD-TFSGEVAFKLYDTYGFPLDLTQDMLREVN-KQVDMKTFNALM 416

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           +EQ+ RARA+  G G     KI     EK    +F+GY+                     
Sbjct: 417 QEQKDRARANWKGSG---DVKINLKDLEKVENNKFVGYEHTEY----------------- 456

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-----D 537
                  + VKA+  +   + E ++G    V+ ++TPFYAE+GGQ+GD G         +
Sbjct: 457 ------KTKVKALFDENMNMVETLNGS-GWVMLEETPFYAESGGQVGDKGELRTYPTSQN 509

Query: 538 G---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           G   I  ++ D +K  +    + + V    L+T   +V  +D +NR +++ NH+ATHLLH
Sbjct: 510 GELRIVAKVVDTKKFDD---KNLSKVVEAELKTGDEVVAKVD-ENRSEIAKNHTATHLLH 565

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS +  + LRFD TH K +T  EL+SIE+ VN +IA+++P   + M
Sbjct: 566 AALRKVLGEHVTQAGSLVEANRLRFDFTHPKALTKEELESIEEMVNRVIAKSIPAEVKEM 625

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A   GA AL G KY D VRVV       G  S  LCGGTHV++T E+   YI+ ES
Sbjct: 626 SIDEAKKMGAMALFGEKYGDVVRVVKF-----GDFSVELCGGTHVNNTAEVNSFYIIKES 680

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AG+RRIEA+ G  A  +  G  + ++ + S  K    ++   VE+  EE +KL+   
Sbjct: 681 GVSAGVRRIEAVAGFGAYRYAKGFRDLVEEIKSENKAK--DLKAFVEKQKEEIKKLKTEI 738

Query: 775 AKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            + +           +I  VN   ++++I  +D+  L+ +   L+ ++ + +  L G +K
Sbjct: 739 KELEKAA------VKEIKPVNKDGINYVIERIDNANLREIATDLKGRVDNLVAFLAGENK 792

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K +++ V T   +D   A DL +  A ++ GG GGG+P  AQ GG +  K D+ IA V
Sbjct: 793 -GKVTLVAVST---VDSVKAGDLIKNYAPIV-GGKGGGKPDFAQGGGKDSGKIDEMIAQV 847

Query: 893 ASFLKK 898
              L K
Sbjct: 848 KKDLIK 853


>gi|315658110|ref|ZP_07910982.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315496439|gb|EFU84762.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 876

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 499/915 (54%), Gaps = 57/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+ LW    GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMAMEPDKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGEAFGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  +I+  E+V+G KY       V  +VI DH+R+ +F I+DG 
Sbjct: 234 MASVAQNVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  GL +LD +++      + +NG  AFKLYDT+G P+++ ++I    G
Sbjct: 354 IKSEEERFHETLQEGLSILDQLIAKAKLTTKEINGSDAFKLYDTYGFPIELTEEIATQEG 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D+ +F   +++QR RAR       S   +     LK     ++F+GY+        
Sbjct: 414 IT-VDMETFENEMQQQRDRARQARQNSQSMQIQSEV--LKNITTKSKFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++  G+ V  A +G  +  V  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    D   + + +V K   G  +H   ++ G +     +   ++   RR +  NHSA
Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTIQFGHVTVNSHVDANVNKDERRDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T+ E++ +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNMAP-----FSLELCGGIHVQNTSEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           I+SES   AG+RRIEA+TG+ A  +L G   K     ++LKV   + V+ +V ++ EE +
Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQRKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            +     +R      L++   +    +I     ++  +   + K ++  MD  + K+Q  
Sbjct: 743 HVNKQLEQRNKEITTLKMGNIEDQVEEINGFKVLATQVDIANPKAIRETMDDFKSKLQDT 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L+    E K S++  V +    +  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILISEV-EGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLKK 898
              +++  +  ++KK
Sbjct: 861 NITESLRFIKDYIKK 875


>gi|254469063|ref|ZP_05082469.1| alanyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087873|gb|EDZ65156.1| alanyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 873

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/912 (40%), Positives = 546/912 (59%), Gaps = 57/912 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++  + IR  FL FF++ GH ++ SSSL+P +DPTL+F N+GM  FK+ F G +KP Y
Sbjct: 1   MKSLTSNQIREIFLNFFREKGHTVVSSSSLVPSDDPTLLFANAGMNQFKDFFLGYKKPKY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT+ F
Sbjct: 61  TTATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIQYAWELLTERF 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPC 172
            +   +L +TVY ED EA+ +WK +  + A+KII+I         DNFW M +TGPCGPC
Sbjct: 121 QIPAEKLLVTVYHEDTEAYDIWKNVIKIPAEKIIKIADKSEKYISDNFWMMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G  IPGG PGS  E+G+R+IEIWNLVFMQF +    E   LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGADIPGGPPGSEDEDGDRFIEIWNLVFMQFNRNENGEMEALPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY+IDLF++LI  + Q    K   ++  + +VI DH+RS +FLI DG+ 
Sbjct: 241 RISAVLQSVHSNYEIDLFQNLIHDAAQALKCKDLSHS--SLKVIADHIRSIAFLINDGVQ 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N+GRGYVLRRI+RRA+ +   LG TE  +M +L +L   M  AYPEL+     IE+T 
Sbjct: 299 PSNDGRGYVLRRILRRAIRHGYKLGATESFLMPILNSLAKNMQEAYPELLTNIKKIEKTT 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E+++F +T+  G+ +L+  ++   K++  +L+G VAFKL+DT+G P+D+  DI     
Sbjct: 359 LQEEDKFFETIANGMSILEQEINLTKKNKSTMLSGSVAFKLHDTYGFPIDLTADICREHN 418

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F+Q + EQ+++A+  S         K   S+      T+F+ Y         
Sbjct: 419 IT-IDQAGFDQDMAEQKNKAKNASQ-------FKAKDSIVIDIDPTKFLAY--------- 461

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                           N   S +++I+   E   E  +     +V  ++PFYAE+GGQ+G
Sbjct: 462 --------------THNEEFSTIESIILNNEPAVEVSANSTCNLVVKESPFYAESGGQVG 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D     + D QK   G+ +H   + RG L+ +  ++  +D+  R  +  NHSA
Sbjct: 508 DTGRIFNDQAEFVVHDTQKLPNGVILHIGELVRGQLKIKDPVLCQVDHIRRDSIKRNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL TILG HV Q GS +     RFD +HS  ++  E++ +E  VN+ I QN P 
Sbjct: 568 THLLHKALKTILGDHVEQKGSLVNEFRTRFDFSHSSALSETEIQQVEQIVNNEILQNNPT 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              +M  + A  SGA  L G KY+D VRV+++        S  LCGGTHV++TG+I L  
Sbjct: 628 SAEVMALDKAKKSGAMMLFGEKYDDEVRVLTIGN------SKELCGGTHVNATGDIGLFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I++ES I +G+RRIEA TG      +  Q++ L + A  LK ++ +V  +++++ ++ + 
Sbjct: 682 ILNESGISSGVRRIEATTGVSLIQIIDKQNQLLNATAKELKTTKDDVAEKIKQVIDQVKT 741

Query: 770 LQLIHAKRKLQ---LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   A+ K +    +  DL      I     +S  I  ++  +L++++D L+  I SGI
Sbjct: 742 QEKTIAQLKQKITNASKNDLLDQIEVIDGTKVLSTNIDNMEIPQLRALIDDLKNNIGSGI 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+L  I++  K ++ + VT+D+ ++F+A  +A   A ++ GG GGG+P MA +GG N N 
Sbjct: 802 IILATINQ-GKINIAVGVTKDITNQFHAGKIAGQLANMV-GGNGGGKPDMAMAGGQNIND 859

Query: 885 ADQAIAGVASFL 896
             +A+  +   L
Sbjct: 860 LPEALIKIKKLL 871


>gi|314936266|ref|ZP_07843613.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654885|gb|EFS18630.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 876

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/909 (36%), Positives = 500/909 (55%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +  
Sbjct: 6   ASDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA++LW +  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PEKLYVTIHPEDVEAYRLWHENIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF ++          LP  +IDTGMGLERM ++ 
Sbjct: 179 AYGQNDPAEEMYPGGENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLERMTSIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  +I+  E ++G KY  NN   V  +VI DH+R+ SF I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL  G+ +L+ +++   +    +NG  AFKLYDT+G P+++ +++    G+  +D
Sbjct: 359 ERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEGIT-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +E+QR+RAR       S   +     LK     +QF+GY+             
Sbjct: 418 MATFEAEMEQQRTRAREARQSSQSMQVQSDV--LKNINTKSQFVGYETTDY--------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          +I+  ++  G+ V  A +G+ V  +  +TPFYA +GGQ+ D G  
Sbjct: 467 --------------QTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQVADKGTV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + + +V K   G  +H  IV+ G +     +  T++ + R+ +  NHSATHLLH
Sbjct: 513 GNDQFEIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDATVNKEERKDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKEILGEHVNQAGSLVESERLRFDFSHFGPMTKEEIDQVERRVNEEIWRGISVHIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 PIQEAKEMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773
              AG+RRIEA+TG+ A  +      K  S+   LKV     V  +V +I E  ++L   
Sbjct: 688 GTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENEKQLNKQ 747

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +R      L++   +     I     ++  +   + KE++  MD  + K Q  II+L 
Sbjct: 748 LEQRNKEITSLKMGNIEDQVEMINGFKVLATEVEVSNPKEIRQTMDDFKSKKQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G   E K S++  V ++L  +  A D+ +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 GHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPENISES 865

Query: 889 IAGVASFLK 897
           +  +  ++K
Sbjct: 866 LRFIKDYIK 874


>gi|256027953|ref|ZP_05441787.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289765898|ref|ZP_06525276.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717453|gb|EFD81465.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 867

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/909 (37%), Positives = 513/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + +R E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVRIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGMQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                         EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ------------------------------EAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IHSDDFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDTVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGVEVNISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
           S I AG+RRIEA TG  A      + + LK +   LK +  N++ +VE+  E  +  + +
Sbjct: 678 SGIAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKE 737

Query: 772 LIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K+KL L           +I     +     +  +++L++++D ++ + +  II+L 
Sbjct: 738 LETLKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEKLLDA 854

Query: 889 IAGVASFLK 897
              +   ++
Sbjct: 855 FKEIREIIE 863


>gi|297584730|ref|YP_003700510.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297143187|gb|ADH99944.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 877

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/912 (36%), Positives = 518/912 (56%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   TSAEVRQMYLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPDNPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT       
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAILWAWEFLTDKRWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L +T+Y ED+EAF++W +  GL  ++IIR+   +NFW + E GPCGP +EIF+D+G
Sbjct: 121 DADKLAVTIYPEDDEAFEIWHQKVGLPKERIIRL--EENFWDIGE-GPCGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E               E ER++EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 EAYGNDPNDPEMFPGGENERHLEIWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N+D DLF  LI+ +E+++G  Y  ++      +VI DH+R+ +F I+DG LP+N
Sbjct: 238 IQDARTNFDTDLFVPLIEETERLSGKTYGEDDQADTAFKVIADHIRTVTFAISDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ YA+ LG  +  M  L+P + + M   YPE+ +    I + +++E
Sbjct: 298 EGRGYVLRRLLRRAVRYAKQLGLDDAFMYKLVPVVGSIMTEFYPEVGEKADFIAKVVKTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF +TL  G+ ++  ++    ++    ++G+  FKLYDT+G P+D+ ++ +   GL  
Sbjct: 358 EDRFHETLQDGMNMIVNLIKEAKENGQTDISGEAVFKLYDTYGFPVDLTEEYVEEAGLT- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGT-TEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F++ ++ QR RAR+     GS    +++  S++E   A+ F GY  L+       
Sbjct: 417 VDKAGFDKEMKAQRDRARSARQDSGSMQLQDEVLGSIEE---ASSFTGYTHLQD------ 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V AIV+ G  V+ A  G +++ +  +TPFYAE+GGQL D 
Sbjct: 468 -----------------EGTVSAIVKDGSRVDFATEGDEIQFMLTRTPFYAESGGQLADQ 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +G+ +++ DV+K   G  +H   +  G L+   ++   +  + R+ +  NH+ATH
Sbjct: 511 GTVHAEGVTVEVDDVKKAPNGQHLHIGKISEGTLKAGAAVTAEVKERMRKAIIKNHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +  D LRFD +H   +T  E+  +E  VN+ I  ++PV  
Sbjct: 571 LLHQALKDVLGEHVNQAGSSVGDDRLRFDFSHFGQMTEEEVNRVEAIVNEKIWASIPVEI 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + + A   GA AL G KY   VRVV V     G +S  LCGG HV +T EI L  +V
Sbjct: 631 MNTSIDHAKEMGAMALFGEKYGKEVRVVQV-----GEYSLELCGGCHVQNTAEIGLFKLV 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE+ I AG+RR+EA+TG+ A   +  Q   L   A+ LK    +V  RV+++ ++ R+  
Sbjct: 686 SEAGIGAGVRRVEAVTGKGAYEFMNHQLAYLDEAAAKLKTKVADVPYRVDQLQKQLREKD 745

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                   +L+  +          I  +  +   +   D   L+   D L++KI SGII+
Sbjct: 746 KEVESLSAKLSNLEAGSVLDDVETIEGIPVLYKQVEAKDMNTLRKTADTLKEKIPSGIIV 805

Query: 827 LVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  ++ + K S++  V++D + + ++A +L +  A + GGGGG GRP MAQ+GG N +  
Sbjct: 806 IGAVTGD-KVSIVASVSKDYVTEGYHAGNLVKEIAGMCGGGGG-GRPDMAQAGGKNPDAL 863

Query: 886 DQAIAGVASFLK 897
            +A+  V   +K
Sbjct: 864 PEALKKVPELIK 875


>gi|256844995|ref|ZP_05550453.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256718554|gb|EEU32109.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 867

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/909 (36%), Positives = 508/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDKNSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGIT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ETK-------------------------------DGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDVQKQKD-IFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDMVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|34763053|ref|ZP_00144027.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887279|gb|EAA24376.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 867

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/909 (36%), Positives = 508/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGIT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ETK-------------------------------DGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDVQKQKD-IFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDMVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|238018985|ref|ZP_04599411.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748]
 gi|237864469|gb|EEP65759.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748]
          Length = 871

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/900 (37%), Positives = 497/900 (55%), Gaps = 55/900 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L S SLIP NDP+L+   +GM P K  FTG+  P    +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W    G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGCKT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+ Y  + N  V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIYPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + +  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIESIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQR RAR   +                               +K    D   L  
Sbjct: 416 EAAMKEQRERAREARVK----------------------------EDAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++     +S V  I +  E ++ A  G ++ V+   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELLEDEAVTASSVLMIGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVGPM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ I +   +    M+ ++
Sbjct: 568 KVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY D VRVV V        S  LCGG+HV +T  I    + SE+ I +
Sbjct: 628 AKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG+ A +        ++ +A  LK     V  R+ ++  E ++      + +
Sbjct: 683 GVRRIEAITGRAALNAAKHDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELEQIR 742

Query: 779 LQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDA-LQKKIQSGIIMLVGISK 832
            +++    +        I DV F++  +      EL+ + D  L +   SG++++     
Sbjct: 743 KEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGAAMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  +A+  
Sbjct: 803 DDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLAEALKA 861


>gi|218961963|ref|YP_001741738.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167730620|emb|CAO81532.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 866

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/907 (39%), Positives = 511/907 (56%), Gaps = 55/907 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  F++FF   GH  +PSS +IP +DPTL+F N+GM  FK+IF GQ++  Y+ 
Sbjct: 1   MISSKEIRQQFIDFFLNRGHIFVPSSPVIPEDDPTLLFANAGMNQFKSIFLGQKEITYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDL+ VG+   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + +
Sbjct: 61  VVNSQKCIRAGGKHNDLEEVGKDGYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY  D EAF++WK+ + +    I      DNFW M ETGPCGPCSEI  D+G
Sbjct: 121 PKDKLYATVYKTDTEAFEIWKQETDIDPTHISYFDDKDNFWEMGETGPCGPCSEIHIDRG 180

Query: 181 ECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                    PG +   +    R+IE+WNLVF+Q+ ++  +    L    +DTG G ER+A
Sbjct: 181 SSHCTRQNEPGHICKINGGCSRFIELWNLVFIQYNREADKTLSPLKNKFVDTGAGFERLA 240

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            VLQ+K +NY+ DLF  LI   E+++G+ Y     + HRVI DH+R   F +ADG  P+N
Sbjct: 241 QVLQDKNSNYETDLFMPLINKIEELSGVAYTQETGMPHRVIADHIRCLCFALADGGFPSN 300

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  Y RLLG+ EP +  L+P +  +M   + EL   +  I+  +++E
Sbjct: 301 EGRGYVLRRILRRAARYGRLLGFAEPFLHLLVPLVIEQMAHHFSELNGKEDYIKMVIKAE 360

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +ERF KTLD GL     +   L K E+++G  AF LYDT+G P D+   +   +GL  ID
Sbjct: 361 EERFNKTLDTGLEKFREITQKL-KGEVISGSDAFILYDTYGFPPDLTAILAEEKGLK-ID 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + ++ QR RAR  S         + W         T+F+GY       +++    
Sbjct: 419 YEGFEKEMQLQRKRARKASK-FTLFVNNEDWIEFSP-VTPTEFVGYKENTVQTYIQRY-- 474

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                              AI ++G           + +   QTPFYAE+GGQ+ DTG  
Sbjct: 475 -------------------AIQEKG----------LILMQLAQTPFYAESGGQVSDTGKI 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +   L+IT+V+K+ E   +H+  ++RG +     +   ID + R+ ++ NH+ATHLLH
Sbjct: 506 YNEEFELEITNVRKQDE-YIIHYGKLKRGTVN-NAPVTAEIDRERRKSIARNHTATHLLH 563

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG H  Q GS +  D LRFD  H + +T  E++ +ED VN  +  N  V T + 
Sbjct: 564 KALREVLGEHTVQKGSLVHSDYLRFDFAHFRALTLEEIRKVEDIVNQAVLDNRKVKTTVK 623

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N E+A   GA AL G KY+++VRVV VE       S  LCGGTH+SSTGEI L  I+SES
Sbjct: 624 NIEEAKKEGAIALFGEKYSEKVRVVCVEN-----FSQELCGGTHISSTGEIGLFKIISES 678

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKL 770
           S  AGIRRIEAITG  A   +    +KL  +++ L     N+  ++E   E+     R+L
Sbjct: 679 SSAAGIRRIEAITGISALKWVQDLQDKLSRISTLLNSPVKNIESKLEATLEQISALEREL 738

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829
           +   AK + +   E LS     +   +    +E D+ +ELK+  + L+ K+Q  I +L  
Sbjct: 739 KSAKAKEEEKFVQELLSKATKQENYLLIKAQTEFDNLEELKTTAEQLKTKMQGTIAVLFN 798

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + ++ K ++L VV+ DL+ ++NA  +    A  L  G GGGR  +A +GG +       +
Sbjct: 799 LYQD-KLNILCVVSADLIPKYNAGKIVAKLANELK-GKGGGRTDIAMAGGKDIANLASVM 856

Query: 890 AGVASFL 896
             V   +
Sbjct: 857 EKVPEII 863


>gi|222824071|ref|YP_002575645.1| alanyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|222539293|gb|ACM64394.1| alanyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 845

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/896 (39%), Positives = 520/896 (58%), Gaps = 58/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +LEFF+  GHE+ PSS L+P +D TL+FTN+GMVPFKNIFTG+         T+ 
Sbjct: 2   DIRKEYLEFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKNIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEILKLPKER 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EA+ LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHESDDEAYNLWQK--HIEKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGAEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER++ + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVSAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I++  ++ G  Y   +  ++RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIIESIAKLCGKTYIYESGASYRVIADHIRSSVFLLAQGVGFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           IMRRA+ +  LLG     M  L+  +C  MG  Y  L + K  I+E ++ E+ERF  T++
Sbjct: 299 IMRRALRHGYLLGLKRAFMYELVDVVCELMGGHYTYLNEKKEFIKEQIKLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L      +I +G+VAFKLYDT+G PLD+ QD+L  + L+ +D   FN+ ++
Sbjct: 359 NGIEIFNEELKKTK--DIFSGEVAFKLYDTYGFPLDLTQDMLREKNLS-VDEAKFNELMQ 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RA+A   G G       +  L EK+G   F GY                      +
Sbjct: 416 EQKDRAKASWKGSGDKAVSGDFKVLLEKFGKNTFSGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + I+  + +  +I+ EA +G    ++ ++TPFYA +GGQ  D G    +    ++
Sbjct: 454 NYEEKTKIIAILDENFKIITEAKAGDIAWLMLEKTPFYATSGGQSADIGFINEN----EV 509

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK  + I +    +++  L+T   ++  ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 510 LDTQKFFD-INLSQVKLKQN-LKTNDEVLACIDTKKREQIARHHSATHLLHHALREILGS 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +  + LRFD TH K +   ELK IE  VN  I Q       I++  +A  SG
Sbjct: 568 HISQAGSLVEHNKLRFDFTHPKALNKEELKQIEALVNTYIMQANEAKVEILSLNEAKKSG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY ++VRV+++        S   CGGTHV ++ EI   YIV ES + AG+RRI
Sbjct: 628 AIALFSEKYQEKVRVLTLG------ASKEFCGGTHVKNSSEIGSFYIVKESGVSAGVRRI 681

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLN 782
           EA+  + A  ++    ++L      LK+   +++  V ++  E   L+       K +L+
Sbjct: 682 EAVVSKAALDYVNENLKELNQAKEELKI--HDILSYVAKLKNEIVSLKNELKNSSKTELS 739

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            ++L        N + + + ++DS ++K+++D  + K  + +++L+   KE K  +   V
Sbjct: 740 SKEL--------NGIQYCVQKIDSGDIKTMIDEFKNKF-NKVVILLLQEKEGKIIIAAGV 790

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +       A  L +  A++L GG GGGR   A +GG + +K +QA+      +++
Sbjct: 791 KD---ASLKAGALVKEIAQML-GGNGGGRDDFATAGGKDTSKIEQALDHARKIIEE 842


>gi|270290968|ref|ZP_06197191.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4]
 gi|270280364|gb|EFA26199.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4]
          Length = 881

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 508/915 (55%), Gaps = 60/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  +L+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   KSSSEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT  + FD
Sbjct: 64  TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  +LY+TVY +DEEA K+W + +G+    I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TGVDPSHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE          E     E ER++EIWN+VF QF  +       LP  +IDTGMGLER+ 
Sbjct: 176 GEEFNNLADDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +V Q+   N++ DLF  +I   E+++G KY  + N+ V+ +VI DH R+ +F I DG +P
Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVSFKVIADHARAITFAIGDGAIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + L   +P +  ++P +   M   YPE++  K  IE+ ++
Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +TL  GL LL+ +++    D  ++++G  AF+L+DT+G PL++ ++    +G+
Sbjct: 356 SEEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGM 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +++Q+ RAR+      S   +     L +    ++++GYD L+      
Sbjct: 416 E-IDEAGFADEMQKQKERARSARSNAKSMGVQSDL--LTDLKTPSEYVGYDTLKVD---- 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             ++++K I+Q  ++ +    G+   V+FD TPFYAE GGQ+ D
Sbjct: 469 ------------------AAVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509

Query: 531 TGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G        +  ++ DVQ    G  +H    +R +     S  L +D     ++  NH+
Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREM-HAGESFTLIVDRAFHLKVEKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + P  LRFD TH   +T  +L+ +E+ +ND I   +P
Sbjct: 569 ATHLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIP 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E     GA AL   KY  +VRVVSV     G +S   CGGTHV +T EI L 
Sbjct: 629 VTTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T Q A   L G++  L+  A  LK +Q  +V  +VE++  + 
Sbjct: 684 KIVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQV 743

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     + + ++   ++        +I  +  ++  +      +L+ + D  + K QS
Sbjct: 744 KDLNQTINQLEAKIAQAEVANIYDQVQEINGIRLITAEVQVSGMDQLRQMADDWKTKDQS 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++L     EK   +  V    + +   A DL +  A  + GG GGGRP+MAQ+GG   
Sbjct: 804 DVLVLGAKIGEKANLIAAVKDPFVKEGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSAP 862

Query: 883 NKADQAIAGVASFLK 897
            K ++A+   + +L+
Sbjct: 863 EKINEALKAASEWLE 877


>gi|6707748|sp|Q9XDM3|SYA_AQUPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4587716|gb|AAD25871.1|AF027500_1 alanyl-tRNA synthetase [Aquifex pyrophilus]
          Length = 871

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/903 (40%), Positives = 531/903 (58%), Gaps = 50/903 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY++VY +DEEA+++W +  G+ +++I R+   DNFW M +TGPCGP SEI+ D+GE 
Sbjct: 124 ERLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDTGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G          RY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 184 YEGEE--------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LI+  E+V+G KY       V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIYPLIEFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG TEP +   +  +   M   YPEL  ++  ++  ++ E+ERF +
Sbjct: 296 IRRILRRAMRFGYQLGITEPFLYKGIDLVVDIMKEPYPELELSRDFVKGIVKGEEERFIR 355

Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+        + L G   F  YDT+G P+D++Q+I   +GL  ID+  F
Sbjct: 356 TLRSGMEYIQEVIEKALSEGRKTLTGKEVFTAYDTYGFPVDLIQEIAKEKGLE-IDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              LEEQR RAR  S  + +   + ++  LKE    ++F+GY+ L               
Sbjct: 415 QCELEEQRERARK-SFKIETKEVKPVYAHLKELGITSRFVGYEHLEY------------- 460

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + V  I+   EIV E   G++ E++  +TPFY E GGQ+GD+G    D 
Sbjct: 461 ----------ETEVLGIIVGDEIVSEIKEGEEGEIILRETPFYPEGGGQIGDSGIIETDK 510

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D Q+  EGI VH   + +G +  +  +   +D + R  +  NH+ATHLLH AL 
Sbjct: 511 GIFKVEDTQRPTEGIIVHIGKLLKGKISVKDIVHARVDKERRWDIMRNHTATHLLHAALR 570

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +    LRFD TH  P+T  E+K IE+ VN+ I +NLPV    M  ++
Sbjct: 571 NLLGEHVRQAGSLVADKYLRFDFTHFSPLTEEEIKRIEELVNEKIRENLPVSVMEMAYQE 630

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+ +GA A+   KY +RVRV+S      G  S  LCGGTHVS+TG+I    I+SESS+ A
Sbjct: 631 ALQTGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGA 685

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI----- 773
           G+RRI A TG+ A +    +   LK +++ L V +  VV +VEE+ EE ++ +       
Sbjct: 686 GVRRIVAQTGRWAVNTAFEEHTTLKKVSNALGVKEDEVVQKVEELKEEIKEKEKEIQKLR 745

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
               KLQ+  E +   +  ++     +  +V+ +EL+++ D L+++    ++  +   KE
Sbjct: 746 QEILKLQIR-EKVKEERHRELTLYYGVFEDVEPEELRNLADILRQRTGKDVV-FIASKKE 803

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K + +I  ++ +     A +L R   KVL GGGG GR  +AQ GG   +K D+++  + 
Sbjct: 804 GKINFVIASSKGISKEVRANELIRQVGKVLKGGGG-GREDLAQGGGKAPDKFDESVKLLK 862

Query: 894 SFL 896
             L
Sbjct: 863 ELL 865


>gi|300854401|ref|YP_003779385.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300434516|gb|ADK14283.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 879

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 516/908 (56%), Gaps = 50/908 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+K GH  +PS SL+P ND +L+  N+GM P K  FTG + P  + VTT
Sbjct: 6   LNQIREMYLSFFEKKGHLRMPSFSLVPNNDKSLLLINAGMAPLKPYFTGLKVPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE  I  AW+  T    + + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEVIPWAWEFTTDVLKIPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y +D+EA+ +W K + +   +I R+   DNFW     GPCGPCSEI +D+GE  
Sbjct: 122 KLYVTIYLDDDEAYDIWVKKTDIDPSRIFRLGKEDNFWEHGA-GPCGPCSEIHYDRGEGK 180

Query: 184 PGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              +     + + +R +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q K 
Sbjct: 181 ITTVDEFVKAGDSDRVVEFWNLVFTQFDKDEEGNYNKLSHPNIDTGMGLERMATIMQGKN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D    +++    + G++Y  N    ++ R+I DH+RS +F+I+DGILP+NEGRGY
Sbjct: 241 SIFEVDTINSILKEVSNMAGIEYSKNEKSDMSMRIITDHVRSVTFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG  E  +  L   +       YPEL + +  I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAAKHGKSLGIKEGFLYKLTEVVINNSCGNYPELKEKEEYIKKIIKLEEERFD 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L+  +S L   K+ +L G+ AFKLYDT+G P+++ Q+IL  +G+  +D+  
Sbjct: 361 ETIDSGMQILNDFISDLKSNKNTVLEGEKAFKLYDTYGFPIELTQEILEEKGMT-VDLDE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FNQ +++QR RAR+          E    +       T F GYD L+ S           
Sbjct: 420 FNQNMKDQRERARSARAETNYMGAENTVLNKIPFEINTVFEGYDRLKSS----------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S VK IV+  E V     G++  ++   TPFYAE GGQ+GD G    +
Sbjct: 469 ------------SKVKLIVKDEEFVSVLNEGEEGVIITANTPFYAEMGGQVGDKGTVFSE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             + ++ D +K   G  +H   V  G +  E ++ L++D   R  +  NH+ATHLL  AL
Sbjct: 517 NFKGEVLDCKKNLAGKVLHFVKVISGSINLEDTIELSVDEDRRSNIRKNHTATHLLDSAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q+GS +    LRFD  H + ++  +L++IE+ VN+ I +  PV T IM+ E
Sbjct: 577 KQVLGEQVHQSGSYVDESRLRFDFNHFEAVSYEKLRNIENLVNESIMKVYPVKTTIMSLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA AL   KY D VRVVSV     G  S  LCGGTHVS++GEI L  I SE+ I 
Sbjct: 637 EAKESGAIALFDNKYKDEVRVVSV-----GNFSKELCGGTHVSNSGEIGLFKITSETGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+TG+ A  ++  + + L+ ++S LK S+  +V +++ +     K      + 
Sbjct: 692 AGIRRIEAVTGKMAAEYVNSKSDILREISSKLKCSEKEIVHKLD-LQSSELKELEKEIEE 750

Query: 778 KLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                             KI  ++  + I+ +VD   L+ + D ++ K ++  ++L+G S
Sbjct: 751 LKLKVAGSAEDDILKSVEKIGGIDLFTGILKDVDGNSLRELADKIRSKSEN-CVVLLGSS 809

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K  ++ + T++ +    +   + +  A + GGGGG GRP MAQ+GG   +K  +AI 
Sbjct: 810 IGGKVQLVAMATKEAVKSGIHCGKIIKEVAAITGGGGG-GRPDMAQAGGRLPDKLQEAIG 868

Query: 891 GVASFLKK 898
              + + K
Sbjct: 869 KSNTIITK 876


>gi|313904037|ref|ZP_07837417.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313471186|gb|EFR66508.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 897

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/915 (37%), Positives = 518/915 (56%), Gaps = 49/915 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL +F++     L S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 9   VNELREMFLSYFEEKECLRLGSFSLVPHNDNSLLIINSGMAPMKPWFTGQEIPPRKRVTT 68

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    DL+NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ LT+   LD  
Sbjct: 69  CQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFLTERVGLDAD 124

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +DEE++ +W     + A++I +    DNFW     GPCGPC+EI++D+G   
Sbjct: 125 RLYPSVYVDDEESYNIWLNDMHIPAERIYKFGKEDNFWEHGS-GPCGPCTEIYYDRGPQF 183

Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       EG+R++E+WN+VF QF    K     L + +IDTGMGLER+A  +QE  +
Sbjct: 184 GNGPEDVMGGEGDRFMEVWNVVFSQFNNDGKGNYTDLVQKNIDTGMGLERLAVAVQEVGS 243

Query: 243 NYDIDLFKHLIQASEQVTG-MKYE----GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            +D+D  K L     ++ G +KYE      + V+ R++ DH R+ +F+I+DGI+P+N GR
Sbjct: 244 LFDVDTVKALRDLICELAGGVKYEQPGTEESDVSVRIVTDHARAMTFMISDGIMPSNNGR 303

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ + R LG T   +  L   +       YPEL + +  I   +++E+++
Sbjct: 304 GYVLRRIIRRAVRHGRKLGITGSFLTKLAENVIEGSKDGYPELAEKRDFILNVIQAEEDK 363

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT ++G+ +L  +   L     + L+G  AFKLYDT+G PLD  ++IL   G A +D+
Sbjct: 364 FEKTYEQGMDILQSMQDALKAEGKKELSGPDAFKLYDTYGFPLDNTKEILEENGFA-VDV 422

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTT----EKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             F  A++ QR  AR      G   T        +   +    + F+GY  L  +     
Sbjct: 423 AGFEAAMKNQRETAREDRKKSGKSATYMGAAATVYEDMDPAVNSAFVGYQGLEATG---- 478

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
             K++         +   S+ +A+            GQ   V+ DQTPFY   GGQ+GD 
Sbjct: 479 --KIVALAAFAADDDEDDSVAEAL----------SDGQSGAVITDQTPFYGTMGGQIGDK 526

Query: 532 GCAI-GDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           G  + GDG    +++  +  A     H   V +G+L+T   + L +D +NR  ++ NHSA
Sbjct: 527 GVIVLGDGEAVFEVSATEHVAGNKIAHIGKVVKGMLKTGDEVSLKVDAKNRLAIARNHSA 586

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+  AL  +LG+HV Q GS    D  RFD +H + +TS E++ +ED VN+ I++ L V
Sbjct: 587 THLMQKALREVLGTHVEQAGSYQDADRTRFDFSHFQAMTSEEIRKVEDMVNEKISEGLAV 646

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            T++M  ++A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T +I    
Sbjct: 647 TTQVMTLDEAKKTGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHVENTQQIAQFK 701

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+SE+ + AG+RRIEA+TG   R +    + +  + A+ LK +   +   + ++ EE + 
Sbjct: 702 ILSENGVAAGVRRIEALTGDNVRRYYEKLEAQTNAAAALLKATPATLADHIRKLQEELKA 761

Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+  +   K +     L     +  +I  V F++  +S VD  EL+++ D L+ K+  G+
Sbjct: 762 LKSENEALKSKEAQNALGDVMNNIKEINGVPFLATAVSGVDMNELRNLGDELKAKVAGGV 821

Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ++LV    + K +++ + T++ + +  +A ++ + SAK++GGGGG GRP+MAQ+GG + +
Sbjct: 822 VLLVS-DNDGKVNMMCMATDEAMKKGAHAGNIIKASAKIVGGGGG-GRPNMAQAGGKDAS 879

Query: 884 KADQAIAGVASFLKK 898
               AIA     L +
Sbjct: 880 GIPAAIAEAEKVLAE 894


>gi|94676688|ref|YP_588660.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|205829990|sp|Q1LTQ4|SYA_BAUCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94219838|gb|ABF13997.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 884

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 527/912 (57%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++ + +R  FL FF + GH+++ SSSL+  NDPTL+FTN+GM  FK++F G +K +YQ+ 
Sbjct: 4   NSTAELRQEFLNFFHQKGHKIVASSSLVSHNDPTLLFTNAGMNQFKDVFLGLDKRLYQSA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+C+RAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK  AIQLAW+LLT  + F+
Sbjct: 64  TTAQRCIRAGGKHNDLEKVGYTARHHTFFEMLGNFSFGAYFKCEAIQLAWELLTGGQWFN 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY  D+E + +W K   +  ++I+RI  N       DNFW M + GPCGPC
Sbjct: 124 LPKDKLWVTVYATDDETYNIWAKQINIPRERIVRIGDNKGKAYASDNFWQMGDIGPCGPC 183

Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G  + G  PGS  E G+RYIEIWNLVF+QF +Q       L K S+DTGMGLE
Sbjct: 184 SEIFFDHGNHLFGAPPGSQGEYGDRYIEIWNLVFIQFNRQMDGTLIPLQKPSVDTGMGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDID+F  LI+A   VT       N  + +VI DH+RS +FL++DG++
Sbjct: 244 RIAAVLQHVNSNYDIDIFSQLIKAVADVTKAT----NTSSLQVIADHIRSCAFLVSDGVV 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+ +GRGYVLR I+RRA+ +  +LG  +     L+  L   MGS   +L Q + ++E+ L
Sbjct: 300 PSQDGRGYVLRHIIRRAIRHGYMLGARDAFFYKLVAPLIEVMGSTADQLKQQQNMVEQVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+E+F +TL+RGL +L+ VL+ L  D  L+G+ AF LYDT+GLP+ +  DI   R + 
Sbjct: 360 RTEEEQFSQTLERGLFMLEQVLTKLTGD-TLDGETAFSLYDTYGLPIYLTTDICRERNIK 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+E QR+RAR  S           + S+      T+F+GY  L+       
Sbjct: 419 -VDENGFKSAMEVQRNRAREASRFSYK------YNSMLSINQYTRFLGYKHLKS------ 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V A+    + VE     +K  V+ D TPFY E+GGQ+GD+
Sbjct: 466 -----------------QGKVTALYLNDQSVEVIYHSEKAIVILDYTPFYGESGGQIGDS 508

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         ++ D +K    +  H  ++  G LR    +   ++   R ++S+NHSATH
Sbjct: 509 GKITAANGIFEVIDTKKYGNAL-GHLGMLNYGELRIGDQVTAKVNQLRRDRISVNHSATH 567

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  +LG HV Q GS +    LRFD +H + +   ++  +E  +N  I +NL + T
Sbjct: 568 LLQSALRQLLGKHVVQRGSLVHDQYLRFDFSHHQAMQVEQIHEVEKIINQQIRRNLIIKT 627

Query: 652 RIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +M  E A   GA ++L  +Y + +VRV+S+     G  S+ LC GTH S TG+I L +I
Sbjct: 628 DMMTLEAAQNQGAISVLDHQYESSQVRVLSI-----GDFSTELCCGTHASRTGDIGLFWI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SES I  GIRRIEAITG+ A  +L  Q   ++ ++   K    N+V +V  +    ++L
Sbjct: 683 SSESGIALGIRRIEAITGEFALKNLHQQSNLVQQISQLFKNDGSNLVEKVRGLQNHIKQL 742

Query: 771 QLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  + + K +   ++++       K+     +   +  ++ K ++ ++D ++ ++ S +I
Sbjct: 743 ESKYQQLKSKQVAQEIAVLSRKISKMHGTQVLVSKLENIEPKIMRHIVDEIKHQLGSVVI 802

Query: 826 MLVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L  I+  + K +++  VT+DL +R  A D+ R   +   GG GGG   +A +G    N+
Sbjct: 803 ILANINLVDGKVNLIAGVTDDLTNRIQASDIIRTLIQKF-GGRGGGSKKIAYAGSITTNE 861

Query: 885 ADQAIAGVASFL 896
               +  +   +
Sbjct: 862 LSTVLYYIEKIV 873


>gi|228475198|ref|ZP_04059924.1| alanine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270809|gb|EEK12211.1| alanine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 876

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/909 (36%), Positives = 499/909 (54%), Gaps = 55/909 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +  
Sbjct: 6   ASDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVN 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT  K   ++
Sbjct: 66  SQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMGME 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+T++ ED EA++LW +  GL   +IIRI    NFW + E GP GP +EIF+D+GE
Sbjct: 122 PEKLYVTIHPEDVEAYRLWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGE 178

Query: 182 CIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 P        E ERY+E+WNLVF ++          LP  +IDTGMGLERM ++ 
Sbjct: 179 AYGQNDPAEEMYPGGENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLERMTSIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    NY+ DLF  +I+  E ++G KY  NN   V  +VI DH+R+ SF I+DG LPANE
Sbjct: 239 QNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGALPANE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ +++ LG  EP M  L+  +   M   YP + +    I+  ++SE+
Sbjct: 299 GRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRVIKSEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           ERF +TL  G+ +L+ +++   +    +NG  AFKLYDT+G P+++ +++    G+  +D
Sbjct: 359 ERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEGIT-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           + +F   +E+QR+RAR       S   +     LK     +QF+GY+             
Sbjct: 418 MATFEAEMEQQRTRAREARQSSQSMQVQSDV--LKNINTKSQFVGYETTDY--------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          +I+  ++  G+ V  A +G+ V  +  +TPFYA +GGQ+ D G  
Sbjct: 467 --------------QTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQVADKGTV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D   + + +V K   G  +H  IV+ G +     +   ++ + R+ +  NHSATHLLH
Sbjct: 513 GNDQFAIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDAAVNKEERKDIQKNHSATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + V  + M
Sbjct: 573 AALKEILGEHVNQAGSLVESERLRFDFSHFGPMTEEEIDQVERRVNEEIWRGISVHIQEM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  IVSES
Sbjct: 633 PIQEAKEMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFKIVSES 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773
              AG+RRIEA+TG+ A  +      K  S+   LKV     V  +V +I E  ++L   
Sbjct: 688 GTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENEKQLNKQ 747

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +R      L++   +     I     ++  +   + KE++  MD  + K Q  II+L 
Sbjct: 748 LEQRNKEITSLKMGNIEDQVEMINGFKVLATEVEVSNPKEIRQTMDDFKSKKQDTIIILA 807

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G   E K S++  V ++L  +  A D+ +  A ++ GG GGGRP MAQ GG       ++
Sbjct: 808 GHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGTQPENISES 865

Query: 889 IAGVASFLK 897
           +  +  ++K
Sbjct: 866 LRFIKDYIK 874


>gi|329770463|ref|ZP_08261842.1| alanyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328836318|gb|EGF85984.1| alanyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 873

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/907 (36%), Positives = 516/907 (56%), Gaps = 55/907 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+FF + GH++ PS+SL+P +DPTL++ NSG+   K  F G+  P    +T
Sbjct: 5   TSTEIRRMFLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGRVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT  K   L
Sbjct: 65  NSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAVAWAWEFLTSEKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +T++ ED EA+ +W    GL  ++IIRI    NFW + E GP GP +EIF+D+G
Sbjct: 121 EKEKLSVTIHPEDTEAYDIWHNQIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E      P        E ERY+E+WN+VF Q+          LP  +IDTGMGLER+A+V
Sbjct: 178 EETDTKSPKEEMYPGGENERYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLERIASV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+   N+D DLF  +I   E+++G KY  NN      +VI DH+R+  F IADG LP+N
Sbjct: 238 LQDVPTNFDTDLFMPIINEIEKLSGKKYGVNNEKDEAFKVIADHIRTVVFAIADGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L      M  L   +   M   YP + ++   +++ +  E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLELNNSFMYKLTDVVAEIMNDYYPNVKESADFVKDVILKE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++RF +TL+ G  +L+G++S +    +I++G  AFKLYDT G P+++ ++     GL  +
Sbjct: 358 EDRFHETLNEGEAILNGIVSEVKDTTKIISGKDAFKLYDTFGFPIELTEEYAEEYGLK-V 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           DI  FN+ +E+Q+ RAR+      S   +   +S     G ++FIGY             
Sbjct: 417 DIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--RIIGNSEFIGYTQFE--------- 465

Query: 474 KVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                         VSS + AIV ++  ++++    + V+VVF++TPFYAE+GGQ+ D G
Sbjct: 466 --------------VSSKLLAIVDKEDNLLDKYSDEEVVKVVFEKTPFYAESGGQIADHG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +G + ++ DV+K  +   +H   V  G  +      L +    R  +  NH+ATHL
Sbjct: 512 EILANGFKAKVLDVKKLPDKRHIHFVKVLEGEFKVGNEYELIVSRDFRLNVEKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I   L + T 
Sbjct: 572 LNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALEIKTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH S++ E+ +  ++S
Sbjct: 632 EMPIAEARKLGAQALFGEKYGDIVRVVSI-----GDYSIELCGGTHNSNSSEVGIFKVIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+TG+ A  +L  Q+E L+++    K +  NVV +V  +  E +KL  
Sbjct: 687 ETGVAAGVRRIEALTGRAAYEYLRQQEETLRTVEKLTKANASNVVEKVTNLQTEIKKLSK 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                + ++   +L     +  ++  +N ++ ++   +   LK ++D  + K+++ II  
Sbjct: 747 EKESLQQKIANAELNNLVNNIKEVNGINVLTSLVESENMNHLKQLVDNAKSKLENYIIAF 806

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             I  + K + ++ V + + D++NA  L  + A V   G GGGRP MAQ+G  N +  D+
Sbjct: 807 ASI-NDDKVNFVVAVDKAITDKYNAGKLVNILATVCE-GRGGGRPDMAQAGAKNKDNIDK 864

Query: 888 AIAGVAS 894
           A   + +
Sbjct: 865 AFEELIA 871


>gi|315640863|ref|ZP_07895962.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483402|gb|EFU73899.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 880

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/916 (37%), Positives = 510/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQVRQLFLDFFRSKGHTVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKEDAIHFAWEFLTSPEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL+ + II I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWSEEIGLTPEHIIEI--EDNFWDIGA-GPSGPDSEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                     P   PG   E ERY+EIWNLVF +F  +       LP  +IDTGMGLER+
Sbjct: 178 PEYLDIAEDDPENFPGG--ENERYLEIWNLVFSEFNHKPDNTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q    N++ DLF  +I + E+++ G+ Y       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQNAPTNFETDLFLPIIHSVEELSQGVHYGDSLQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGQKLGIQQAFLYKLVPVVGHIMESYYPEVLKQQAFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    
Sbjct: 356 VRNEEERFHETINEGLAILNEVIEDVKANNRTTLAGQAIFKLYDTYGFPVELTEEVAEDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D + F + ++ QR RARA      S   +     L +    + ++GY  L     
Sbjct: 416 GLK-VDHVGFEKEMQAQRDRARAGRSKEQSMGVQSTL--LTDIKVESDYVGYSDLE---- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+     V++   G   +++F +TPFYAE GGQ+
Sbjct: 469 -------------------AKSALVLIISDDAFVKKIDEG-SAQLIFAKTPFYAEMGGQV 508

Query: 529 GDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            DTG  +         +T+V+K   G F+H   V +G L       L ++     +   N
Sbjct: 509 ADTGIVVNSEGMIVADVTNVKKAPNGQFLHTVTV-KGQLIEGTEYFLQVNTAKHNKTIKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATH+LH AL  +LGSH +Q GS + P+ LRFD TH   +T  EL  +E  VN+ I + 
Sbjct: 568 HTATHMLHKALKEVLGSHANQAGSLVAPEHLRFDFTHFGQVTPEELVKMEQIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPVVT   + + A A GA AL G KY   VRVV++        S  LCGG HV +T +I 
Sbjct: 628 LPVVTVETDIDSAKAMGAMALFGEKYGHDVRVVNI-----ADWSIELCGGNHVKNTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IVSES I AG+RRIEA+T + A      Q+E+LK +AS +K  Q   VV +V+++ +
Sbjct: 683 LFKIVSESGIGAGVRRIEAVTSKEAYLLAREQEEQLKQVASLVKSPQLKEVVSKVDQLQQ 742

Query: 766 EYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + ++ Q  +     KL           I +VN ++++ S+V   D  +L+ + D  ++K 
Sbjct: 743 QLKEAQKENDTLSTKLANQQASDIFTDIKEVNGVTYVASQVNVKDMNQLRQLADQWKQKA 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L   + EK   ++ +  + +   + A +L +  A  +GGGGG GRP MAQ+GG 
Sbjct: 803 ISDVLVLATAADEKVNLLVAMSEQAIQKGYKAGELVKAIAPKVGGGGG-GRPDMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N      A+A V+ +L
Sbjct: 862 NPAGIPDALAAVSEWL 877


>gi|325570263|ref|ZP_08146129.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325156746|gb|EGC68920.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 880

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/915 (38%), Positives = 519/915 (56%), Gaps = 63/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRMT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPEWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL+ + I+ I   DNFW +   GPCGP SEIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWAEEVGLTPEHIVEI--EDNFWDIGA-GPCGPDSEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                      E     E ERY+EIWNLVF +F  Q       LP  +IDTGMGLERM +
Sbjct: 178 PEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q    N++ DLF  +I A   ++G    G+     ++ +VI DH+R+ SF I DG LP
Sbjct: 238 IVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDAAFLYKLVPIVGEIMESYYPEVLEQQEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V++ +  D    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 NEEERFHETINEGLDILNQVIAQVKADNQDTLAGQDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F Q ++ QR+RARA      S   +     L +    ++F+GYD L       
Sbjct: 418 K-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE------ 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +S +  I+Q   + +   +G+  +++F +TPFYAE GGQ+ D
Sbjct: 469 -----------------ANSELLVIIQDEALHDSVSTGE-AKLIFAETPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG  + +   +  ++TDV+K   G F+H A V +  L+  ++  L +D   R ++  NH+
Sbjct: 511 TGTIVAEDGTIVAEVTDVKKAPNGQFLHTATV-KAPLQEGVNYFLQVDQHRRNKIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E  VN  I + LP
Sbjct: 570 ATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWEALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I + 
Sbjct: 630 VVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGTHVANTEDIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K +Q   VV + E++  + 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSQEAYTLLHEEETQLKAIAGIVKSAQLKEVVAKTEQLQAQL 744

Query: 768 RKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           R+LQ  +     KL           + +VN +  I ++V   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQKDHS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L   + + K ++L  + +   ++   A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-TANDGKVNLLAAMNKVANEKGLKAGDLIKEIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFL 896
                 A+   A++L
Sbjct: 863 PEGITAALETAAAWL 877


>gi|324013703|gb|EGB82922.1| alanyl-tRNA synthetase [Escherichia coli MS 60-1]
          Length = 784

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    E+
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDATALPAALASVKGWV 779


>gi|149194975|ref|ZP_01872068.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134896|gb|EDM23379.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 846

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/893 (39%), Positives = 517/893 (57%), Gaps = 56/893 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL+FF+  GH++ PS+ L+P +DP+L+FTN+GMVPFK IFTG++  P     T+ 
Sbjct: 2   DIRKKFLDFFESKGHKVYPSAPLVP-DDPSLLFTNAGMVPFKPIFTGEKPAPTPPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI  AW+ +T+   LD+ R
Sbjct: 61  QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLKLDKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L+IT+++ D+EA K+W+K   +S D+I+++   DNFW M +TGPCGPCSEI +DQGE   
Sbjct: 121 LWITIHESDDEAGKIWQKY--VSKDRIVKMGDKDNFWQMGDTGPCGPCSEIHYDQGEKFN 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+ +    +   LP+ SIDTGMGLER+  V +   +NY
Sbjct: 179 SSEDYLGGEGDRFLEIWNLVFMQYNRDESGKLTPLPRPSIDTGMGLERITAVFEGVESNY 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +  +FK LIQ   ++TG +Y  +    +HRVI DH+R+ SFL+A G+    EGRGYVLRR
Sbjct: 239 ETSIFKPLIQKVVEITGKEYFKDKRGASHRVIADHIRAVSFLVAQGVRFDREGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RR + +  +LG  EP M  ++  L  +M   YP L + K  I+E ++ E+ERF +T+D
Sbjct: 299 ILRRGVRHGYMLGMKEPFMYKIVDTLANQMKDNYPYLEEKKEAIKEAIKIEEERFFETID 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ L    LS    + I +G+VAFKLYDT+G PLD+ QD+L       +DI +F++ ++
Sbjct: 359 KGMALFKEELSKTTGN-IFSGEVAFKLYDTYGFPLDLTQDMLREVN-KKVDIETFDRLMK 416

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RARA+  G G    +KI     EKY   +F+GY+                      
Sbjct: 417 EQKERARANWKGSG---DKKINLKDLEKYPPNKFVGYEKTSH------------------ 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--RL 541
                 + +KA+    E  E         V+ ++TPFYAE+GGQ+GD G    +    R+
Sbjct: 456 -----KTKIKALF-DEEFNEVDKLNGSGWVMLEETPFYAESGGQVGDRGELRIENGELRI 509

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + D +K  E    + + VE+  L+    ++  +D   R +++ +HSATHLLH AL  +L
Sbjct: 510 NVVDTKKFDER---NLSKVEKAKLKVGDEVLAVVDESRR-EIAKHHSATHLLHSALRKVL 565

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H++Q GS +  + LRFD TH K ++  EL  IE+ VN +IA+        M+ ++A  
Sbjct: 566 GEHITQAGSLVEANRLRFDFTHPKALSKEELNKIEEMVNRVIARGFEGEVSEMSIDEAKK 625

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY D VRVV       G  S  LCGGTHV +T EI   YIV ES + AG+R
Sbjct: 626 LGAMALFGEKYGDIVRVVKF-----GDFSIELCGGTHVKNTSEIGSFYIVKESGVSAGVR 680

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G  A  +     + ++ L S  K +    + +  E  +E  K      K   Q 
Sbjct: 681 RIEAVVGYSAYEYGKNYRDLVEELKSKNKTND---LDKFIEKQKEEIKKLKEEIKSLKQA 737

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            V+++       +NF+   I  +D+  L+ +   L+ ++ + +  L+G +K K   V + 
Sbjct: 738 AVKEIKPINKDGINFV---IERIDNANLREIATDLKGRVDNLVTFLIGENKGKVNFVAVS 794

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             +D      A DL +  A ++ GG GGG+P  AQ GG +  + D+ I  V  
Sbjct: 795 KVKD----IKAGDLIKEFAPIV-GGKGGGKPDFAQGGGKDIERIDEVIKKVKE 842


>gi|241890033|ref|ZP_04777331.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863655|gb|EER68039.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 873

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/905 (36%), Positives = 512/905 (56%), Gaps = 55/905 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF + GH++ PS+SL+P +DP+L++ NSG+   K  F G+E P    +T
Sbjct: 5   TSTQIRRMYLDFFVEKGHKIEPSASLVPIDDPSLLWINSGVATLKKYFDGREIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  A+  AW+ LT  K   L
Sbjct: 65  NSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L +T++ ED EA+ LWK + GL  ++IIRI    NFW + E GP GP +EIF+D+G
Sbjct: 121 EKEKLSVTIHPEDTEAYDLWKNVIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 E----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E      P        E +RY+E+WN+VF Q+          LP  +IDTGMGLER+ +V
Sbjct: 178 EEADTWSPKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYSELPAKNIDTGMGLERIVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ+   N+D DLF  +I+  E+++G KY       V  +VI DH+R+  F IADG LP+N
Sbjct: 238 LQDVPTNFDTDLFIPIIREIEKLSGAKYGVSTEQDVAFKVIADHIRTVVFAIADGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ +A++LG     M  L   +   M   YP + ++   +++ +  E
Sbjct: 298 EGRGYILRRLLRRAVRFAKVLGLNNSFMYKLTDVVAEIMVDYYPNVKESASFVKDVILKE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++RF +TL  G  +L+ + + +    ++++G  AFKLYDT G P+++ ++     GL  +
Sbjct: 358 EDRFHETLHEGETILNNIANEVKDTTKVISGKDAFKLYDTFGFPIELTEEYAEELGLT-V 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           DI  FN+ +E+Q+ RAR+      S   +   +S  +  G ++F GY  L          
Sbjct: 417 DIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--KIVGDSEFTGYTSLTD-------- 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTG 532
                             V AIV + + + E   G++V +VVF++TPFYAE+GGQ+ D G
Sbjct: 467 ---------------EGKVLAIVDREDNLLENYKGEEVVKVVFERTPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +G + ++ DV+K  +   +H   V  G L       L ++   R  +  NH+ATHL
Sbjct: 512 LVTAEGFKAEVVDVKKLPDKRHIHFVKVVEGELVVGKEYKLEVNRPYRLNVEKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL   +GSH+ Q GS +T + LRFD+TH  P+T  E++ +E  VN  I   L + T 
Sbjct: 572 LNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNALEIKTE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVVS+     G +S  LCGGTH  ++ E+ +  IVS
Sbjct: 632 EMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNVNSAEVGIFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG+ A  +L  Q+E L+S+    K +  NVV +V  +  + +KL  
Sbjct: 687 ESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANSSNVVEKVSSLQSDIKKLSK 746

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                + ++   +L     +  ++  VN ++ ++   +   LK ++D  + K+++ +I  
Sbjct: 747 EKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKLENYVIAF 806

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             +  E K + ++ V + + D++NA  L  + A  +  G GGGRP MAQ+G  N +  D+
Sbjct: 807 ASV-NEDKVNFVVAVDKAITDKYNAGKLVNVLA-TVCDGRGGGRPDMAQAGAKNKDNIDK 864

Query: 888 AIAGV 892
           A   +
Sbjct: 865 AFDEL 869


>gi|322385851|ref|ZP_08059494.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270136|gb|EFX53053.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 872

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/916 (36%), Positives = 499/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L K    ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKKKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +                          
Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     +  ++TDVQK   G  +H   V    L       L ID   R ++  N
Sbjct: 508 ADHGQILDAAGNVVAKVTDVQKAPNGQPLHTVEVL-APLALNQEYTLAIDTNRRLRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ILGSH +Q GS    + LRFD TH + +T  EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 IAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LKV Q   V  +VE + E
Sbjct: 682 LFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKVPQLKEVPHKVEGLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDLLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           N  K  + +  VA  L
Sbjct: 857 NQAKIQELLDAVAGKL 872


>gi|188586395|ref|YP_001917940.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205830160|sp|B2A5J7|SYA_NATTJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|179351082|gb|ACB85352.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 878

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/910 (36%), Positives = 518/910 (56%), Gaps = 52/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLEFF+   H +  S S+IP NDP+++   +GM P K  FTG++ P    +
Sbjct: 1   MRTHEIRKKFLEFFETKDHYVRKSYSIIPENDPSILLIGAGMAPLKPYFTGEKTPPSPRM 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D++ VG T RH TFFEMLGNFSFG YFK  AI   ++  T+   L 
Sbjct: 61  ATSQKCVRT----PDIEEVGITARHATFFEMLGNFSFGDYFKREAIFWGYEFCTEWLSLS 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+ +VY +D+EA+ +W    G+  ++I+R+   DNFW +  TGPCGPCSEI +D+G 
Sbjct: 117 PEKLWASVYLDDDEAYDIWHDEVGIPHERIVRLGKEDNFWEIG-TGPCGPCSEIHYDRGA 175

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +RY+EIWNLVF QF +  +     L + +IDTG GLER+A +LQ+
Sbjct: 176 EYGCDSPDCKPGCDCDRYLEIWNLVFTQFNRDEEGNYTTLKQKNIDTGAGLERLAVLLQD 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297
             + Y+ID+ K ++    Q++G+ Y  +N   ++ R+I +HLRS +F++ DG+LPANEGR
Sbjct: 236 VPSIYEIDIIKPILDHVIQLSGVNYGEDNDKDISLRIITEHLRSVTFIVGDGVLPANEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA  + +LLG  +  M   +  +   M  AYPEL + +  I++ +  E++R
Sbjct: 296 GYVLRRILRRASRHGKLLGIKDTFMSDGVDLVIDIMKEAYPELEERREYIKKIVEIEEDR 355

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KT+D+GL +L+  L ++ K     L G  AFKLYDT+G PL++ ++I+   G   +D 
Sbjct: 356 FNKTVDQGLGILNEFLENMNKQGKNTLEGSDAFKLYDTYGFPLELTREIVQENGYT-LDE 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + L  QR +AR          TE       +     +F GYD L            
Sbjct: 415 QGFQEELNRQREQARKAQQESEGMLTESNAMKQFQD-QKVEFTGYDNLE----------- 462

Query: 476 LCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         S +  I+  +  ++++E   G++V+++ + TPFY E+GGQ+GDTG 
Sbjct: 463 ------------QESQIIGIIDHKNDDLLKEVQEGEEVQILINPTPFYGESGGQIGDTGE 510

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D  R  + +         V    V  G LRT   +   +DYQ R+ +  NHSATH+L
Sbjct: 511 IFSDNGRAHVKNSSVNGYDQTVLQVKVTDGQLRTGDKVSGKVDYQRRKDIMKNHSATHML 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H+AL  ++G+HV Q GS + PD LRFD TH  P++  E+K IE  VN +I +N  V    
Sbjct: 571 HYALKKVVGAHVEQAGSLVAPDRLRFDFTHFAPLSEDEIKQIELEVNKLIRENSRVRVIN 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA AL   KY   VRV+ +        +  LCGGTH ++TGE+ L  I ++
Sbjct: 631 TDLEEAKELGAVALFEDKYEQEVRVIEIGP------AVELCGGTHATATGELGLFKIDNQ 684

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           +S+ AG+RR+EA+TGQ A  +L  + E+++ +A  LK  +  VV + +E  E+++     
Sbjct: 685 TSVGAGVRRLEALTGQHALEYLDQKAEQIQDIAELLKTEENKVVEKTQEFLEDFKAKDKE 744

Query: 774 HAKRKLQL---NVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K Q+    V+DL      I+D   +++ +++ D+  L+ + + ++ K+ SG+++L 
Sbjct: 745 IEKLKNQIFTFKVDDLLAQSKDISDFKLVANQLNDFDADSLRDLSERVKNKLDSGVVVL- 803

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G S   KA  + +VT+DL+++  +A ++ +  AK+ GGGGG GRP MAQ+GG   +K ++
Sbjct: 804 GSSTNNKALFVAMVTKDLVEKGVHAGNIVKEVAKITGGGGG-GRPDMAQAGGKEPDKLNE 862

Query: 888 AIAGVASFLK 897
           AI  V + ++
Sbjct: 863 AIMKVETLVR 872


>gi|291563232|emb|CBL42048.1| alanyl-tRNA synthetase [butyrate-producing bacterium SS3/4]
          Length = 884

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/906 (37%), Positives = 511/906 (56%), Gaps = 41/906 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+   H  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  AW+ LT+   +   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWAWEFLTECVGIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++W +  G+  ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFRIWNEEIGIPKERIYRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       EG+R++E+WN+VF QF          L + +IDTGMGLER+A V Q+  +
Sbjct: 181 GTGPEDVMGGEGDRFMEVWNVVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVCQDVAS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D  + L+     +   +YE ++   V+ R+I DH++S +F+ +DGI+P+NEGRGYV
Sbjct: 241 LFDVDTNRALMDEVGALAHCRYEEDDKKDVSLRIIADHVKSCTFMASDGIMPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            RR++RRA  + R+LG     M  L   +       YPEL + K +I   +  E+ERF  
Sbjct: 301 FRRLLRRAARHGRILGIEGNFMTKLAQVVIDLSKDGYPELEEKKDMILRVIDQEEERFAN 360

Query: 361 TLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L  +         ++L G+ AFKLYDT+G P+D+ ++IL  +GL  +D   F
Sbjct: 361 TIDKGLEILADLEKDMEAKGTKVLAGEDAFKLYDTYGFPIDLTKEILDDKGLT-VDEEGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++A++ QR  AR+          + I+  L      + F GYD L     +    ++   
Sbjct: 420 HKAMQVQRETARSARKTTNYMGRDDIYQKLDASL-TSAFTGYDKLEDESKVTALVRLAAD 478

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +                  + EI +    G+K  V+  +TPFY   GGQ+GD G      
Sbjct: 479 EEG----------------EDEIADAVTDGEKACVITSETPFYGTMGGQVGDRGVIESAN 522

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++ D      G   H   +  G+ +T  ++ L ++ +NR  +  NHSATHLLH AL 
Sbjct: 523 GKFEVEDTIHLQGGKIGHIGHMVSGMFQTGETVTLKVNEENRSLIGRNHSATHLLHKALR 582

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           T+LG+HV Q GS +T D LRFD TH   ++  E+K +E+ VN  I   LPVVT +M+ ED
Sbjct: 583 TVLGTHVEQAGSLVTRDRLRFDFTHFSAMSQDEIKEVENIVNKEIRAALPVVTDVMSLED 642

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  +GA AL G KY D+VRVV +     G  S+ LCGGTHV +T EI    I+SE+ + A
Sbjct: 643 AKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVKNTSEISCFKILSEAGVAA 697

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+T      H    +++L + A+  K +  ++  ++E + EE + L   + K K
Sbjct: 698 GVRRIEALTSDGLIHHYENVEQELHAAAAAAKSTPADLTTKIESMMEEIKTLHSENEKLK 757

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L  E +        ++  V  ++     VD   L+++ D L++K+  G++++  +  +
Sbjct: 758 SKLAKEAMGDVMDQVQEVKGVKVLAVRADGVDMNGLRNLGDQLKEKLGEGVVVIASV-LD 816

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++  VT++   +  +A +L +  A ++GGGGG GRP+MAQ+GG        A+A V
Sbjct: 817 GKVNLMAAVTDEAQKKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKKPEGVADALAKV 875

Query: 893 ASFLKK 898
           A  + +
Sbjct: 876 AEVVSE 881


>gi|110597674|ref|ZP_01385959.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110340794|gb|EAT59271.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 901

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/923 (36%), Positives = 510/923 (55%), Gaps = 68/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 16  MNSREIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGTRPYNRA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T  + L 
Sbjct: 76  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELMTGVWKLP 135

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TVY +D+E+F++WK  + +S + I+R    DNFW M ETGPCGPCSEI  D  +
Sbjct: 136 ADRLYATVYQDDDESFQIWKDHTSISPEHILRFGDKDNFWEMGETGPCGPCSEIHIDLTD 195

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    +    R IE+WNLVF+Q+ +Q+      LP   +DTGMG ER+A V+Q K+
Sbjct: 196 D-ASGKSLVNVGDYRVIELWNLVFIQYNRQSDGRLEPLPNKHVDTGMGFERVAAVMQGKS 254

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+FK L     ++TG++Y    +  + +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 255 SNYDTDVFKPLFDRITEITGVRYGASMDEPHDIAMRVIADHARTLTFALSDGAMPSNEGR 314

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y++ LGY EP++  L+  L   MG  +PEL + +  + + +RSE+E 
Sbjct: 315 GYVLRRILRRALRYSKNLGYNEPILHQLVGTLADSMGDVFPELKKQRDTVSKIIRSEEES 374

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + + V+S +   K  ++ G  AFKLYDT+G P D+ + +    GL  +D 
Sbjct: 375 FIVTLDRGIEIFNDVVSKVRSAKGTVIKGVDAFKLYDTYGFPFDLTRLMASDEGL-QVDG 433

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ++RARA          +   +       AT F+GY+ L            
Sbjct: 434 EGFEHCMQEQKTRARADRKEKHQIEEDGSQWLWFSDQHATSFVGYEQLELPV-------- 485

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                    I+    + +K+ ++ D+TPFYAE+GGQ+GD G   
Sbjct: 486 ------------------------RIIACKHAKEKLLILLDKTPFYAESGGQVGDRGWIE 521

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM------------SLVLTIDYQNRRQL 583
               RLQ+TD  K  + I          IL T +            S   ++D+  R+  
Sbjct: 522 TASYRLQVTDTVKDGDAIVHVVTAAFDKILDTAVNPADLTIDEGQLSAEASVDHHIRQDT 581

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  ILG HV Q GS + P+ LRFD +H   ++ AE+  +E +VN+ I
Sbjct: 582 ERNHTATHLLHGALRRILGQHVQQKGSYVNPERLRFDFSHFSKMSDAEIARVEASVNEEI 641

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +   V     +  +DAIA GA A  G KY D VRVV V        S  LCGGTHV + 
Sbjct: 642 RRAEEVQKHADIPYDDAIAKGALAFFGDKYADLVRVVEVPG-----ISVELCGGTHVDNI 696

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761
           G I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK      V  R+ 
Sbjct: 697 GRIGLFKIVSESSVASGVRRIEALTGKSAEKLLWQEYAELQQIRQLLKAKGDEPVASRIV 756

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDAL 816
           E+ +  ++L+    + ++   ++ LS       +++    ++ ++   D   L+S   AL
Sbjct: 757 ELMDARKELEKELHEIRIGSLLQSLSVDLQSAPEVSGCKLLAKVVEGADGDALRSAGLAL 816

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++ +     +L  + ++ K S+ +  ++  +     +A  L R  A+ + GG GGG+P  
Sbjct: 817 REAVPCAAGLLCSV-QDGKVSLAVFASDKAVKELGIDAGKLIREVAQHVQGG-GGGKPEF 874

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG N +  ++A+    + +K
Sbjct: 875 ATAGGKNPDGVNKALEAFTTAVK 897


>gi|206896025|ref|YP_002246808.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206738642|gb|ACI17720.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 876

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/902 (37%), Positives = 511/902 (56%), Gaps = 50/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR+ +L FF++ GH  LPSSSL+P +DPTLMFT++GMV FK  F GQ +P  + +
Sbjct: 3   MSGDEIRSVYLSFFEEKGHLRLPSSSLLP-DDPTLMFTSAGMVQFKPYFLGQAQPPAKRI 61

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TTVQKC+R G    DL+NVG T+RHHTFFEMLGNFS G YFK+ AI  AW+L+T+ F L 
Sbjct: 62  TTVQKCLRTG----DLENVGHTSRHHTFFEMLGNFSIGDYFKKEAILWAWELVTQRFKLP 117

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC-SEIFFDQG 180
             RL++T+Y +D+E+F +W  + GL  ++I+R+   +NFW            SEI +D G
Sbjct: 118 PERLWVTIYQDDDESFDIWHNLVGLPENRIVRMGKEENFWGPPGPTGPCGPCSEIHYDMG 177

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E  P   P  G + EGER+ E WNLVF Q+ Q        LP+ +IDTGMGLERMA ++Q
Sbjct: 178 EEWPCDDPSKGPAAEGERFREFWNLVFTQYYQDENGNLSDLPRKNIDTGMGLERMAAIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K  N++ DLF+ +I+A  Q+TG KYE  N+V  RVI DH+R+ +F I DG +P+NEGRG
Sbjct: 238 GKPTNFETDLFQPIIEAIGQLTGKKYE-ENLVAFRVIADHIRALTFAITDGAVPSNEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RRI RR++ Y   LG  EP + +++P +     + YPELI  + L  + ++ E+E F
Sbjct: 297 YVIRRIARRSVRYGLQLGKEEPFLYNIVPVVVEHYKNWYPELIGGQDLSMKLIKQEEEAF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL      LD ++  + K  I  +  +  F+LYDT+GLPLDI+ D+L    L+  D  
Sbjct: 357 LRTLSSSQRYLDELVQQMKKQGIKEVPAEEVFRLYDTYGLPLDIIDDVLQENNLST-DKE 415

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
             NQ +E+ + ++RA   G  +  T+ I+  L      T+F GYD L  S          
Sbjct: 416 KLNQIIEQYKEQSRASWKGGEAVLTDTIFTRLVGNI-KTEFTGYDQLEDS---------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S + A V+      E   G +  ++ + TPFYAE+GGQ  D G    
Sbjct: 465 -------------STIIATVKDNSR-TELHEGDEGAIIVEHTPFYAESGGQEADHGIITT 510

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +    ++ DVQK   G + VH+  V  G+++      L +D + R+ +   H+ATHLLH 
Sbjct: 511 ETGTFRVDDVQKVLGGNVIVHYGQVTSGVIKEGQQAFLQVDIERRKAMQRAHTATHLLHA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD  RFD +H + ++ A+++ +E  VN+ + +N  V     +
Sbjct: 571 ALRRVLGDHVRQGGSKVGPDWFRFDFSHFESMSPAQIQEVERLVNEQVLENKEVNIFFTS 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A   GA AL G KY + VRVV V        S  LCGGTH   TG+I L +I+SES+
Sbjct: 631 LDEAKKMGAMALFGEKYGETVRVVEVP-----DWSMELCGGTHAKRTGDIGLFHIISESA 685

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
              GIRRIEAITG++A  HL   ++ +K +A  L  S+  VV +++++ ++ ++      
Sbjct: 686 SSQGIRRIEAITGKKALEHLWNLEKLVKDVAEELDTSKDMVVQKLQKLNQDLKEKDKEIK 745

Query: 776 ---KRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
              +R      ++L     +I  + F++ +    D   L   +DA++       +  +G 
Sbjct: 746 HLIERVHTAEGKELFTKAEEINGIKFINAVFPPRDPSALIIAVDAMRS-FNKPFVAALGT 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              +K  +++  + D+ ++ N  ++  ++A  + GG GGGRP + Q+GG + ++   A+ 
Sbjct: 805 LNNEKPVLVLAASPDVAEKVNLREVVNMAASYI-GGKGGGRPTLVQAGGTDASRLSVAVQ 863

Query: 891 GV 892
             
Sbjct: 864 QA 865


>gi|167771374|ref|ZP_02443427.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM
           17241]
 gi|167666014|gb|EDS10144.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM
           17241]
          Length = 926

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/912 (34%), Positives = 496/912 (54%), Gaps = 53/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDP-TLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + ++ +R  FL FF+   H  LPS  L+P  D  +L+  NSGM P K  F G E P  + 
Sbjct: 50  TGLNELREKFLSFFESKEHLRLPSFPLMPSADEASLLLINSGMAPMKKWFLGLETPPRRR 109

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  A   AW+ +TK  ++
Sbjct: 110 VTTCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEFITKALEM 165

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+++VY++D+EA ++W K  G+   +I+R+   DNFW +   GPCGPCSEI+FD+G
Sbjct: 166 PVDRLWVSVYEDDDEAEQIWTKEVGVDPSRIVRLGKEDNFWEIGS-GPCGPCSEIYFDRG 224

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  G   + +RY+E WNLVF QF+         +   +IDTGMGLER+A ++Q
Sbjct: 225 EQYGCGKPTCGVGCDCDRYVEFWNLVFSQFDGDGNGHYERMEHPNIDTGMGLERLACIMQ 284

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N +++D  +++++   ++ G++Y  +    V+ RVI DH+RS++F+++DGILP NEG
Sbjct: 285 GVDNLFEVDTVQNILKHVARIAGVEYHTDAKTDVSLRVITDHIRSTTFMVSDGILPQNEG 344

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG  EP +  +   +  E  +AYPEL++ +  I + ++ E+E
Sbjct: 345 RGYVLRRLLRRAARHGRLLGIHEPFLYQVCETVIQENANAYPELVEHRDYITKVIKVEEE 404

Query: 357 RFGKTLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           RF +T+D+G+ LL  ++  +      +I+ G  AF+LYDT+G P+D++++IL  R +  +
Sbjct: 405 RFARTIDQGMELLTAIIDKIDSEMDKKIMPGADAFRLYDTYGFPVDLIREILAERKIK-L 463

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + ++ Q+ RAR     LG    E+   +    +G  +F+GY  +          
Sbjct: 464 DEEEFARQMQAQKQRAREARAALGDLGWEEDVLADVADHG--RFVGYTEMA--------- 512

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + + AI++  + V+E   G+   +V D TPFYAE+GGQ GD+G 
Sbjct: 513 --------------AQAHIVAIIKDDKRVDELHDGELGSIVLDVTPFYAESGGQAGDSGL 558

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
               G    + D +K   G FVH   +  G L    S+   I+   R  +  NH+A HLL
Sbjct: 559 ISAGGNVFAVYDCKKSKTGHFVHIGELTAGTLAVGDSVSAAINVDRRADIMRNHTACHLL 618

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q G+       RFD +H   +T  ELK +E+ VN ++  ++ V    
Sbjct: 619 QAALRQVLGDHVHQAGAFYDDTICRFDFSHFSAVTPEELKRVEELVNRVVLASIDVSVSE 678

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  ++A   GA AL G KY D VRV SV  E     S  LCGGTH+ +T ++ L  IV E
Sbjct: 679 MPIDEAKKLGAMALFGEKYGDVVRVCSVPGE-----SVELCGGTHLKNTAQVGLFRIVKE 733

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQL 772
           SS+ AG+RRIEA+TG+     +  Q+  ++  A+ LKV     +  R E +  E R+ + 
Sbjct: 734 SSVAAGVRRIEAVTGRNVLRLMDEQETTMEKTAAALKVGNLSELPARAEALNAESREQKR 793

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                + +L    L     +  ++  +   S  +       L+ + D ++      +   
Sbjct: 794 RLEAAEAKLAESQLSGVFDNAQQVGGIYIASVAMMGAKIDALRRMGDRVRDSRPDAVCAF 853

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K S+L+V  +D + +  +A  + +     L GG GGGRP  A  G     + D
Sbjct: 854 -STVNDGKGSILVVCGKDAVAKGAHAGKIVKEL-TALCGGSGGGRPDNAMGGTSEIFRID 911

Query: 887 QAIAGVASFLKK 898
           +A+A + + + K
Sbjct: 912 EAMAQLPAIVGK 923


>gi|225377640|ref|ZP_03754861.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM
           16841]
 gi|225210504|gb|EEG92858.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM
           16841]
          Length = 886

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/911 (38%), Positives = 513/911 (56%), Gaps = 54/911 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT 
Sbjct: 8   NELRRMYLEFFESKGHLKMNSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 67

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   L++ R
Sbjct: 68  QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVLGLEEDR 123

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFD 178
           LY ++Y ED+EAF +W K  G+ A++I R          DNFW     GPCGPCSEI++D
Sbjct: 124 LYPSIYGEDDEAFNIWTKEVGVPAERITRFYRDPETGECDNFWEHGA-GPCGPCSEIYYD 182

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V
Sbjct: 183 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVV 242

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     +++G KYE +  + V+ R+I DH+RSS+F+I+DGI+P+N
Sbjct: 243 MQDVDSVFDIDTMKAIRDRVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSN 302

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E
Sbjct: 303 EGRGYVLRRIIRRAARHGRMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQE 362

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F KT+D+GL +L+ +   +     ++L+GD AFKLYDT+G P+D+  +IL  +G   
Sbjct: 363 EEKFAKTIDQGLAILEDMEKEMIASGSKVLSGDNAFKLYDTYGFPMDLTSEILEEKGFT- 421

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+E QR+ AR +         +   +   +    T+F+GYD L         
Sbjct: 422 IDEDGFKKAMEVQRTTARKNRKTTNYMGADATVYDEIDPSVTTEFVGYDKLET------- 474

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           +S V  +  + EIVE    G+   ++ ++TPFYA  GGQ GD G
Sbjct: 475 ----------------ASTVTVLTSETEIVEALSDGEIGTIIVEETPFYATMGGQQGDKG 518

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++ D  K   G   H   +  G++++   + L++D   R +   NHSATHL
Sbjct: 519 VIYTADGTFKVEDTIKLLGGKVGHVGKMTSGMIKSGDKVTLSVDADLRGKTCKNHSATHL 578

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    +  RFD +H + +T+ E+  +E  VND IA +L V T 
Sbjct: 579 LQKALREVLGTHVEQAGSYQDAERTRFDFSHFQAMTAEEIAKVEKIVNDEIAADLEVRTD 638

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  E+A  +GA AL G KY ++VRVVS+     G  S   CGGTHV  TGEI    I+S
Sbjct: 639 VMTVEEAKKTGAMALFGEKYGEKVRVVSM-----GEFSKEFCGGTHVKHTGEIAAFKIIS 693

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEA+TG    ++    + +L+  A   K +   +V ++E +  E + L  
Sbjct: 694 ESGVAAGVRRIEALTGDNVFAYYKNIEAELERAAKAAKTTPAALVEKIEHMMAEIKALNA 753

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +   E L        ++  V  ++  ++ VD   L+ + D L+ K+  G+++L
Sbjct: 754 ENESLKSKAAKEALGDVMDQVVEVKGVKLLATSVAGVDMNGLRDLGDQLKGKLGEGVVVL 813

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
                + K +++ + TE+ + +  +A +L +  A  +GGGGG GRP+MAQ+GG N     
Sbjct: 814 AS-EADGKVNLVAMATEEAMKKGAHAGNLIKAIAGKVGGGGG-GRPNMAQAGGKNPAGIP 871

Query: 887 QAIAGVASFLK 897
            A+A     L+
Sbjct: 872 DAVAEAKVALE 882


>gi|294785718|ref|ZP_06751006.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294487432|gb|EFG34794.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 867

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 510/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGIT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ETK-------------------------------DGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IE+ VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D+VRVV V        S+ LCGGTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L+D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLIDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|304385238|ref|ZP_07367583.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284]
 gi|304328445|gb|EFL95666.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284]
          Length = 881

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 506/915 (55%), Gaps = 60/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  +L+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   KSSSEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT  + FD
Sbjct: 64  TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  +LY+TVY +DEEA K+W + +G+    I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLE-TGVDPSHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE          E     E ER++EIWN+VF QF  +       LP  +IDTGMGLER+ 
Sbjct: 176 GEEFNNLADDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +V Q+   N++ DLF  +I   E+++G KY  + N+ V  +VI DH R+ +F I DG +P
Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVPFKVIADHARAITFAIGDGAIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + L   +P +  ++P +   M   YPE++  K  IE+ ++
Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +TL  GL LL+ +++    D  ++++G  AF+L+DT+G PL++ ++    +G+
Sbjct: 356 SEEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGM 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID   F   +++Q+ RAR+      S   +     L +    ++++GYD L+      
Sbjct: 416 E-IDEAGFADEMQKQKERARSARSNAKSMGVQSDL--LTDLKTPSEYVGYDTLKVD---- 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             ++++K I+Q  ++ +    G+   V+FD TPFYAE GGQ+ D
Sbjct: 469 ------------------AAVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509

Query: 531 TGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G        +  ++ DVQ    G  +H    +R +     S  L +D     ++  NH+
Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREM-HAGESFTLIVDRAFHLKVEKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG H  Q GS + P  LRFD TH   +T  +L+ +E+ +ND I   +P
Sbjct: 569 ATHLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIP 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E     GA AL   KY  +VRVVSV     G +S   CGGTHV +T EI L 
Sbjct: 629 VTTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T Q A   L G++  L+  A  LK +Q  +V  +VE++  + 
Sbjct: 684 KIVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQV 743

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     + + ++   ++        +I     ++  +      +L+ + D  + K QS
Sbjct: 744 KDLNQTINQLEAKIAQAEVANIYDQVQEINGFRLITAEVQVSGMDQLRQMADDWKTKDQS 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            +++L     EK   +  V    + +   A DL +  A  + GG GGGRP+MAQ+GG   
Sbjct: 804 DVLVLGAKIGEKANLIAAVKDPFVKEGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSAP 862

Query: 883 NKADQAIAGVASFLK 897
            K ++A+   + +L+
Sbjct: 863 EKINEALKAASEWLE 877


>gi|116493011|ref|YP_804746.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
 gi|122265525|sp|Q03ER8|SYA_PEDPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116103161|gb|ABJ68304.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745]
          Length = 881

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/916 (35%), Positives = 495/916 (54%), Gaps = 62/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR  +L+FF+  GH + PS+SL+P +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   KSSSEIRRMYLDFFKSKGHIIEPSASLVPQDDPTLLWINSGVATMKKYFDGSVVPEVPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QK +R     ND++NVG T RHHT FEMLGNFS G YFKE AI  AW+LLT  + + 
Sbjct: 64  TSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWYG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  +LY+TVY +DEEA K+W +   +    I+++   DNFW + E GP GP SEIF+D+
Sbjct: 120 MDPEKLYVTVYPKDEEAKKIWLETP-IDPSHIVKV--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 GECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           GE          E     E ER++EIWN+VF QF  +       LP  +IDTGMGLER+ 
Sbjct: 176 GEAFNNLEDDDPENYPGGENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVV 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292
           +V Q+   N++ DLF  +I   E+++G KY  N    ++ +VI DH R+ +F I DG +P
Sbjct: 236 SVFQDAPTNFETDLFLPIIHEVEKLSGKKYGENKESDISFKVIADHARAITFAIGDGAIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  ++P +   M   YPE++  +  I + ++
Sbjct: 296 SNEGRGYVIRRLLRRAVMHGKQLGVNETFLYKMVPVVGEIMKDYYPEVLADQDYIAKVIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF +TL  GL LL+ ++        + ++G  AF+L+DT+G PL++ ++    +GL
Sbjct: 356 SEEDRFSETLTDGLELLNTIIDETKTKGSDTISGFDAFRLFDTYGFPLELAKEYASDKGL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   +++Q+ RAR+      S   +     L +    ++++GYD LR    + 
Sbjct: 416 K-VDEAGFEDEMQKQKERARSARSTEKSMGVQSDL--LTDLKTESKYVGYDTLRVDNAIL 472

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
           E+                      ++Q G++ +    G+   V+F+ TPFYAE GGQ+ D
Sbjct: 473 EN----------------------VIQDGKLTDIVEPGE-ARVLFNITPFYAEMGGQVAD 509

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G        +  ++ DVQ    G  +H     + +     +  L ++     ++  NH+
Sbjct: 510 QGEIRDANGEIVAEVIDVQHAPNGQNLHTIKALKKMHS-GAAYTLEVNRAFHLKVEKNHT 568

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  ILG H  Q GS + P  LRFD TH   +T+ +L  +E  +N+ I   +P
Sbjct: 569 ATHLLDQALRDILGDHTQQAGSLVEPGYLRFDFTHFGQVTNEDLDRVEKIINEKIYDEIP 628

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + E     GA AL   KY  +VRVV +     G +S   CGGTHV +T EI L 
Sbjct: 629 VTTVETDLETGKKMGAIALFNDKYGKKVRVVGI-----GDYSKEFCGGTHVKNTNEIGLF 683

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T Q A   L  ++  LK  A  LK +Q  +V  + E++    
Sbjct: 684 KIVSESGVGAGVRRIEAVTSQAALEFLNTEENLLKQTAGLLKSAQLKDVPTKTEQLQSNV 743

Query: 768 RKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     QL     K Q         +I  V  ++  +      +L+ + D  + K QS
Sbjct: 744 KALTQKISQLEAKIAKSQAANIGDEMVEINGVRLIAADVQVSGMDQLRQMADDWKNKDQS 803

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L     E KA+++  V +D + +   A DL +  A  + GG GGGRP+MAQ+GG N
Sbjct: 804 DVLVLAAKIGE-KANLIAAVKDDFVKKGLKAGDLIKAIAPKVNGG-GGGRPNMAQAGGSN 861

Query: 882 GNKADQAIAGVASFLK 897
            +    A+     +L+
Sbjct: 862 PDNIKAALQAAREWLE 877


>gi|15894955|ref|NP_348304.1| alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|20532257|sp|Q97IG3|SYA_CLOAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15024640|gb|AAK79644.1|AE007677_6 Alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509092|gb|ADZ20728.1| alanyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 881

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/911 (35%), Positives = 515/911 (56%), Gaps = 50/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR ++L FF+K  H  LPS SLIP ND +L+  N+GM P K  FTG + P    V
Sbjct: 4   MGLNDIRESYLSFFEKKEHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFTGLQTPPKTRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++N+G+T+RH TFFEMLGNFSFG YFKE  I  AW+ +T+     
Sbjct: 64  TTCQKCIRTG----DIENIGKTSRHGTFFEMLGNFSFGDYFKEEVISWAWEYITEVLKFP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + R+YIT+Y +D+EAFK+W + +G+   +I R    DNFW     GPCGPCSE+ FD+ E
Sbjct: 120 KDRIYITIYLDDDEAFKIWTEKAGVDPSRIFRFGKEDNFWEHGS-GPCGPCSEMHFDRRE 178

Query: 182 C----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                         ++ +  IE WNLVF QF++        L   +IDTGMGLER+AT++
Sbjct: 179 KPDLIKTREKFIELQDKDEVIEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   + ++ID  + ++ A  ++  +KY  N  N V+ R+I DH+RS +F+I+DGILP+NE
Sbjct: 239 QNTDSIFEIDTIREVLDAVCKICNVKYGENHKNDVSLRIITDHIRSVTFMISDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + + LG  +  +  L   +      AY EL + +  I+  +  E+
Sbjct: 299 GRGYVLRRLLRRAARHGKTLGIEKTFLCGLCDVVIKNSKGAYKELEEKQDYIKNVIEIEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           +RF +TLD G+ +L   +  L     ++++G+ AF+LYDT+G P+++ Q+IL  +G+  I
Sbjct: 359 KRFDETLDSGMEILKNYIDELSLENKKVMSGEKAFRLYDTYGFPVELTQEILEEKGIE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D+  F+  +E+Q++RAR           E        +   T+F+GY+            
Sbjct: 418 DMNDFHSEMEKQKNRARDAREESNYMGKEIKLIDKLPESVTTKFVGYNSTSTD------- 470

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V+ +++  E V     G+   VV ++TPFYAE GGQ+GD G 
Sbjct: 471 ----------------SKVEVLIKDDEFVSTINEGESGIVVTEETPFYAEMGGQIGDKGI 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G     ++ D +    G  +H   V +G +    ++ L ++Y+ R+ +  NH+ATH+L
Sbjct: 515 IFGKNGEAKVVDCKNNISGKIIHIVQVVKGSIEKNENVTLEVNYKKRKDICKNHTATHML 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  ++GSH++Q+GS +  + LRFD TH   +T  E+  +E  VND I     V T I
Sbjct: 575 QAALKKVVGSHINQSGSYVDNERLRFDFTHFTALTDEEILKVEAMVNDEIMAAYDVKTDI 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  +GA AL   KY +RVRVVSV     G  S  LCGGTHV+++GEI L  I+SE
Sbjct: 635 MSVDEAKKTGAMALFDEKYGNRVRVVSV-----GDFSRELCGGTHVNNSGEIGLFKIISE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AGIRRIEAITG+ A  +    D  ++++   LK S+ +++ ++ +   E ++ +  
Sbjct: 690 SGVAAGIRRIEAITGKEAVRYTEENDNLIRNIEQELKCSKKDILNKINQYHSELKEKEKE 749

Query: 774 --HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K KL    E+    S  +++ V +++  +  +    L+ + D ++ KI  G+++L 
Sbjct: 750 INILKGKLASGFEENILSSVKEVSGVKYVASEVKGISGDTLRELCDKVRNKIDDGMVLLA 809

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
               E K   + + +++ + +  +   + +  A  + GG GGGRP MAQ+GG +G K + 
Sbjct: 810 SKDGE-KVQFVAMASKNAVKKGVHCGKVIKEVAS-MCGGNGGGRPDMAQAGGKDGEKLET 867

Query: 888 AIAGVASFLKK 898
           A+  V + ++K
Sbjct: 868 ALKEVGNIMEK 878


>gi|300815902|ref|ZP_07096126.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300531831|gb|EFK52893.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1]
          Length = 784

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPGALASVKGWV 779


>gi|257887497|ref|ZP_05667150.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257823551|gb|EEV50483.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733]
          Length = 880

 Score =  863 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/917 (38%), Positives = 512/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L+G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKSENGTTLSGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +          +I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     +L +
Sbjct: 863 PAGIPDALKAAKEWLAQ 879


>gi|295094821|emb|CBK83912.1| alanyl-tRNA synthetase [Coprococcus sp. ART55/1]
          Length = 887

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/903 (37%), Positives = 502/903 (55%), Gaps = 40/903 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEF +  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+ AD+I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVDADRIFRFGKEDNFWEHGA-GPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G++YE +    V+ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   +  E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELSEKKEYIFNKIDKEEESFN 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L   +       +++L+GD AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 KTIDTGLAILKDYIDETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEILEEEGIE-VDEDR 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +  Q+  AR           +   +        ++F+GYD L           +  
Sbjct: 420 FTECMNIQKETARKARKTTTYMGADATVYEQLPVDMTSEFVGYDKL------TYKSTISA 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
               +   +   S++          +    G +  V+  +TPFYA  GGQ+GD G    +
Sbjct: 474 ITTEVGEGDDKKSVLA---------DTVSEGAQASVIVPETPFYATMGGQIGDKGIIKTE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D  K   G   H   VE G L       LT+D +NR  +  NHSATHLL  AL
Sbjct: 525 NGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQRAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + P  LRFD +H + +T  E+K +ED VN+ I  ++PV T +M+ +
Sbjct: 585 KMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDIPVCTDVMSVD 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVVS+     G  S  LCGGTHV+STG I    I+SE+ + 
Sbjct: 645 EAKETGAMALFGEKYGEKVRVVSM-----GDFSKELCGGTHVASTGAIKTFKIISEAGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG RRIEA+T   A  +    +++L   A   K     V  R+E++  E ++L   + K 
Sbjct: 700 AGTRRIEALTSVGALDYYRNVEQELMDAAKAAKTDIYGVASRIEQLLAEVKELTNENKKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E       S      +  ++  I + D   L+++ D  + K+   +++L   +K
Sbjct: 760 KDKMAKEAAGDVLSSAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSVVVLAS-AK 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++ + T+  + +  +A ++ +  A ++GGGGG GRP+MAQ+GG N +  + A+A 
Sbjct: 819 DGKVNLIAMATDGAVAKGAHAGNIIKAVAGLVGGGGG-GRPNMAQAGGKNPDGIEAALAQ 877

Query: 892 VAS 894
             +
Sbjct: 878 AVT 880


>gi|283853948|ref|ZP_06371151.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283570662|gb|EFC18719.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 880

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/899 (43%), Positives = 537/899 (59%), Gaps = 42/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL+FF   GH+ + SS LIP  DPTL+FTN+GMV FK +F GQ+KP Y+ 
Sbjct: 1   MMTANEIRAKFLDFFAAQGHQKVASSPLIPREDPTLLFTNAGMVQFKKVFLGQDKPGYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW  LT+   L
Sbjct: 61  ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY TVY +D+EA  LWKKI+GL+ D+I R+   DNFWSM +TGPCGPCSEI FD+G
Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLTDDRIFRLGEKDNFWSMGDTGPCGPCSEIMFDRG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G      + + +RY+EIWNLVFMQ++Q     R  LP+ SIDTGMGLER+A V+Q
Sbjct: 181 EEVSCGPDCGIGTCDCDRYLEIWNLVFMQYDQIAPGNRVALPRPSIDTGMGLERIAAVVQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DIDLFK +I ++  + G+ Y  N+      RVI DH RS +FL+ADG++P+NEG
Sbjct: 241 GVHSNFDIDLFKAIIASAATIAGVAYGHNDEHDTALRVIADHSRSVAFLLADGVMPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +L+G ++P +      +   MG A+PEL+  +  +E  +R E+E
Sbjct: 301 RGYVLRRLIRRALRFGKLIGLSDPFLYKTAGTVVDVMGDAFPELLAGREFMERVVREEEE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RFG TLD+GLV+L   L  LG+  + +++G  AFKLYDT+G PLDI+ D+   RG+A  D
Sbjct: 361 RFGVTLDKGLVILAEELDRLGEAGEAVISGQFAFKLYDTYGFPLDIVNDVAGKRGMAA-D 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              +   + EQ++RA+    G G      ++  L E    ++F+GYD L G         
Sbjct: 420 EDGYRACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYDALTG--------- 470

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         +S V A+V  +G+ VE  V+G+   +V   TPFY E+GGQ GD G 
Sbjct: 471 --------------ASRVNALVSAEGQAVERLVAGETGYMVCAVTPFYGESGGQSGDVGL 516

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    +    K    +  HH  V++G +  +    L +D   R   + NH+ATHLL
Sbjct: 517 VSTLTGDAAVIGAIKAGPDLTAHHIEVKKGEILLDQEAELAVDPAVRAATARNHTATHLL 576

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV+Q GS +TPD LRFD TH   +T  EL  +ED VN  I  + PVVT +
Sbjct: 577 HKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELARVEDEVNAAILLDAPVVTEV 636

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  + A A GA AL G KY D VRVV V        +   CGGTH+ +TG+     I+SE
Sbjct: 637 MGIDAARAKGATALFGEKYGDEVRVVEVPG-----VTMEFCGGTHLRATGQAGSFLILSE 691

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG RRIEA TG  A  H+     +       LK   G +V RV++++++ R L   
Sbjct: 692 SGVAAGTRRIEAATGLNALRHVREMRGEYDEGLKTLKAKPGELVPRVKKLFDDIRALGKE 751

Query: 774 HAKRKLQLNVE---DLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +   +L      DL     ++  V  +   +   + K L+  MD L+ K+ SG+I L 
Sbjct: 752 KEQLAGKLASGQGRDLMAGLEEVGGVKLLCARVDAPNVKALREAMDDLRSKLPSGVIALA 811

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              ++ K S+++ V++DL  RF A  L + +A  +GG GG GRP MAQ+GG N    D+
Sbjct: 812 AEQEDGKVSLIVAVSKDLHARFTAPVLIKDAAASVGGSGG-GRPDMAQAGGTNPAGIDE 869


>gi|227551394|ref|ZP_03981443.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330]
 gi|257895992|ref|ZP_05675645.1| alanyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|293377450|ref|ZP_06623652.1| alanine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293570502|ref|ZP_06681557.1| alanyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227179513|gb|EEI60485.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330]
 gi|257832557|gb|EEV58978.1| alanyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|291609448|gb|EFF38715.1| alanyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292643968|gb|EFF62076.1| alanine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 880

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/917 (38%), Positives = 512/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L+G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLSGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +          +I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     +L +
Sbjct: 863 PAGIPDALKAAKEWLAQ 879


>gi|139436944|ref|ZP_01771104.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC
           25986]
 gi|133776591|gb|EBA40411.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC
           25986]
          Length = 878

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/894 (40%), Positives = 525/894 (58%), Gaps = 47/894 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ FL FF++ G +L PSSSL+P +DP+L+  N+GM  FK  + G++       
Sbjct: 1   MTTAEIRSKFLNFFEERGLKLYPSSSLVP-DDPSLLLANAGMNQFKEYYQGKKTMKEIGA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVR     ND+D +G   RH +FFEMLG+FSFGG  K++A   A++L+TKEF L 
Sbjct: 60  ISCQKCVRT----NDIDCIGEDGRHLSFFEMLGDFSFGGVSKQQACAWAFELITKEFKLP 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TV+ ED+E   +W+ + G++ D I R+  +DNFW+   TGPCGPCSEI+FD GE
Sbjct: 116 LDRLYFTVFTEDDETHDVWRSL-GVAEDHISRLGEDDNFWAAGPTGPCGPCSEIYFDMGE 174

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P      + +R++E WNLVF Q+++Q       LP  ++DTGMGLERMA ++Q 
Sbjct: 175 EVGCGSPDCKPGCDCDRFLEFWNLVFTQYDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 234

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGILPANE 295
           KT NYD DL +HLI+  E+++G  Y+ ++      + R+I DH R+  F+I+DGILP NE
Sbjct: 235 KTANYDGDLMQHLIKLGEEISGKTYDADDYSGASRSLRIIADHSRAVDFMISDGILPGNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GR YVLRR++RRA+ + RLLG     +   +  +  +MG AYPEL++   L++  + SE+
Sbjct: 295 GREYVLRRLLRRAVFHGRLLGIEGAFLTKFIDEVNAQMGEAYPELLKNVALVKGIVASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TLD G V LD  L+ L +   L GDVAFKL+DT G P+D+  +I    G   +D+
Sbjct: 355 ERFSTTLDNGRVYLDEALAALAEGAALPGDVAFKLHDTFGFPIDLTVEIAGTAG-HDVDM 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+Q++RARA++ G   G+   +W  L +K  A++F GYD              
Sbjct: 414 DGFTACMEDQKARARANAKGDAWGSFNDVWVELSDKVAASEFDGYDN------------- 460

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V AIV+ GE VE A +G+ VEVV D+TPFYAE GGQ GD G   
Sbjct: 461 ---------DVIEGAKVVAIVRNGESVESAAAGEDVEVVLDRTPFYAEMGGQQGDAGKLS 511

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G+ L + D  K   G++ H A V  G L    ++   +D + R  L  NH+ATHLL  
Sbjct: 512 AEGVVLTVADT-KNHNGLYAHVAHVADGTLTVGAAVTAALDAERRGFLRRNHTATHLLDA 570

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HVSQ GS +TP+ LRFD TH + ++S +LK++ED VN  I  + PVVTR+M 
Sbjct: 571 ALKQVLGEHVSQAGSLVTPEHLRFDFTHFEALSSEQLKAVEDLVNQQIFASKPVVTRVMG 630

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA AL G KY D VRVVSV  ED    S  LCGGTH ++T EI L  I+SESS
Sbjct: 631 IDEAKAAGAVALFGEKYGDVVRVVSVGAED-QPFSRELCGGTHAANTAEIGLFKIISESS 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             + +RRIEA+T + A  ++  +   + + A+ LK     V  R+E +  E R+      
Sbjct: 690 TGSNVRRIEAVTSKGALDYMADRLALVDAAATALKCRVDEVPARMENLQAELRET-SNKL 748

Query: 776 KRKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           K+ L     D     I           +   +  +++ +L++V D + +K+   +  +V 
Sbjct: 749 KKALTGGSSDAISSAIEGAVELDGYKLVVAELQGLEAADLRNVWDTVHQKVAGPVACVVA 808

Query: 830 ISKEKK-ASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
              EK   ++L   ++D +   F+A ++ +  A ++  G GGGRP+MAQ+GG N
Sbjct: 809 SVTEKGTPALLAAGSDDAVKAGFHAGNVIKQIAGLV-DGRGGGRPNMAQAGGKN 861


>gi|58698333|ref|ZP_00373249.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630565|ref|YP_002727356.1| alanyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|58535157|gb|EAL59240.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592546|gb|ACN95565.1| alanyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 880

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/902 (44%), Positives = 558/902 (61%), Gaps = 54/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHGS 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +EG+R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 181 P-------NLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N + H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALISKSQEYCGRT---ENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RR++RRA  Y  LLGY + L+  + P L        MG  YPELI+AK LIE TL+SE+E
Sbjct: 291 RRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSAYMGDIYPELIRAKSLIETTLKSEEE 350

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL +G+ LL+   + L   + L G+ AFKLYDT+G PLDI  DIL  + +   D  
Sbjct: 351 NFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLYDTYGFPLDITLDILKEKKI-NFDQK 409

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+ EQ+ RARA   G G  + E++WF L +K+G T+F+GY                
Sbjct: 410 GFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDKFGKTKFVGY---------------- 453

Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                 +      + + AIV  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I
Sbjct: 454 ------EFNEVNDAKILAIVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLI 507

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + I +   K   +++H  IV+ G +    ++  +ID + R+ L  NHSATHLLH 
Sbjct: 508 KSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHF 567

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L  ILG HV+Q GS + PD LRFD +H+  +T  +L  +ED VN +I +NL   T+I +
Sbjct: 568 VLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLFLVEDMVNSLIRENLSTSTKIQS 627

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              AI  GA AL G KY ++VRVV +        S  LCGGTHV  TGEI L  IV+ESS
Sbjct: 628 MNQAIDEGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIH 774
           +  G+RRIEA+TGQ A +++   +  LK +A F+K     ++ R+  + +E ++ +  I 
Sbjct: 682 VAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEIINRLNILNQERKESEAKIK 741

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              K  ++ E +   +I  +NF+SH  + + +  ++  +  LQ++    II      K+ 
Sbjct: 742 NLYKKLISAESIKSTEINGINFVSHAFTNIPANIIREFV--LQQQKPKTIIAFTATEKD- 798

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  ++I V++DL ++ +A +L  ++ +       GG   +AQ+G  + NK D AI  + S
Sbjct: 799 KTVLIIKVSKDLANKISAKELVSIAVE----KNCGGNAELAQTGC-DSNKIDDAITAICS 853

Query: 895 FL 896
            +
Sbjct: 854 KI 855


>gi|148270517|ref|YP_001244977.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|205830276|sp|A5IMH8|SYA_THEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147736061|gb|ABQ47401.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1]
          Length = 863

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/902 (39%), Positives = 535/902 (59%), Gaps = 48/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY  V
Sbjct: 4   MTSEEIREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+   + 
Sbjct: 63  ATCQKCLRTV----DIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + +L+++VY+EDEEAF++W +  GL   KI+R+   DNFW     TGPCGP +EIF+D G
Sbjct: 119 EEKLWVSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTG 178

Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               C  G     +    R++EIWNLVF ++ Q  + +   LP+ +IDTG GLER   ++
Sbjct: 179 YSKGCPEGEECTPANSEGRFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +N+D DLF+ +I   E++TG+ Y  +    V+ RVI DH+R+ +FLI++G+ P+NE
Sbjct: 239 QGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHMRAITFLISEGVFPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRAM +  LLG +EP +  ++ A+  +MG  YPE+++ + +++E L +E+
Sbjct: 299 GRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVAEKMGKVYPEIVRGESMVKEVLSAEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF KTL++G+ + D ++    K   ++ + AFKLYDT+GLPL++  +I   +G+  +D+
Sbjct: 359 SRFLKTLEQGMKVFDEIVE---KKGRIDSEDAFKLYDTYGLPLELTLEIAREKGVE-VDV 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +EEQ+ ++R   LG         +     K   T+F GY+ L            
Sbjct: 415 KEFNKYMEEQQRKSRVA-LGDVEFARRYEYLEELPKDFRTEFTGYEKLED---------- 463

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V  I +  + VE+A     VEVVF +TPFYAE GGQ+ DTG   
Sbjct: 464 -------------EGEVVLIAKNEKAVEDATE-DAVEVVFSKTPFYAEKGGQVSDTGTVE 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +  +  +  V + +EG+ VH   V  G LR    +VL +D + R     NH+ATHLLH 
Sbjct: 510 WEDGKALVEYVFEASEGVIVHRIKVLAGTLRRGQKVVLRVDKKRREATMRNHTATHLLHA 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH K ++ AE++ +E+ VN+ I + +PV  R  +
Sbjct: 570 ALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSMAEIEQVENLVNEWIMEAIPVEVRYTS 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A+ SG  AL   KY D VRVV          S  LCGGTHVS+TG+I L  I+SE S
Sbjct: 630 YEEAVKSGVVALFTEKYGDVVRVVE-----VPGVSKELCGGTHVSNTGQIGLFKIISEES 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +G+RRIEA+TG      L  Q + +  L   L   +  +  RV  + E+ ++L+   +
Sbjct: 685 VSSGVRRIEAVTGFSTLELLRNQKKLIDQLKEILGAREDELTDRVLGLREKVKELEKKLS 744

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           + ++    +               +  +V++K L  + D + KK + GI++L+    E K
Sbjct: 745 QGRI-SEEKIAMKQLEDGARVFYAVFEDVEAKHLGGIADNVLKKEREGIVILLS-KFEDK 802

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+++ V+E+LLD+++A  +AR  AK L GG GGGR + AQ+GG +  K    +  +  F
Sbjct: 803 VSLVVKVSENLLDKYDASSIARNIAKEL-GGSGGGRRNFAQAGGRHPEKIRGVLERLEEF 861

Query: 896 LK 897
           L+
Sbjct: 862 LR 863


>gi|289423561|ref|ZP_06425362.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156063|gb|EFD04727.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 878

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 521/908 (57%), Gaps = 49/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F EFF+  GH +  S SL+P ND +L+  NSGM P KN F+G E P  + +
Sbjct: 4   MGLNEIRKNFTEFFRSKGHYIAKSHSLVPSNDKSLLLINSGMAPLKNYFSGVETPPKERM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           +TVQKC+R G    D++NVG T RH TFFEM+GNFSFG YFK+ AI  AW+ +T+   L 
Sbjct: 64  STVQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKDAITWAWEFITQWLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY+ D+EA+ LWK + G   ++I+R+  +DNFW +   GPCGPCSEI+FD+GE
Sbjct: 120 EEKIWVTVYESDDEAYDLWKNMIGFPEERIVRLGKDDNFWEIGL-GPCGPCSEIYFDKGE 178

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +R++E WNLVF QF++Q       L   +IDTGMGLERMA V+Q+
Sbjct: 179 KYGCGCEDCKPGCDCDRFLEFWNLVFTQFDRQEDGSYGDLENKNIDTGMGLERMACVMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  + ++Q   ++ G  Y  +  N  + R+I DH+RS SF++ADGILP+NEGR
Sbjct: 239 VDTIFEVDTIQEVLQNVCKIAGKTYGNDPKNDKSIRIITDHIRSVSFMVADGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     +  L+  +    G AYPEL++ +  I++ +  E+E+
Sbjct: 299 GYVLRRLLRRAARHGKLLGIEGGFLNDLVDVVIKTSGEAYPELVEKEAYIKKVIGIEEEK 358

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F + L +GL +L              ++G++AFKLYDT+G PLD+  +IL   G+  +D 
Sbjct: 359 FAEALHQGLEILKSYTEETKDAGKTHISGEMAFKLYDTYGFPLDLTMEILEDEGMT-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++ Q+ RARA          ++   +  E   +++F GY  L+           
Sbjct: 418 EGFEAEMQAQKDRARAARGNREGDAWKEDPLTRLED-ASSEFDGYKNLKMD--------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S VKAIV   E+V+    G + E++ D T FY   GGQ+GD G   
Sbjct: 468 --------------SKVKAIVADNELVDSIEEGCEAELILDTTTFYPNGGGQVGDKGTIE 513

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++ D  K A     H   +  G L+    +  +++ + R   + NHSATHLLH 
Sbjct: 514 SDIGVFEVVDTIKGANSSIKHIGRLVSGSLKLGDLVATSVNKELRMDAARNHSATHLLHK 573

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG HV+Q GS + PD LRFD TH + IT  +L  IE+ VND + +++P+   +MN
Sbjct: 574 ALKTVLGEHVNQAGSLVAPDRLRFDFTHFESITKDQLLEIEEMVNDFVLESMPITAEVMN 633

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A   GA AL G KY + VRVV++     G  S  LCGGTH+ +T ++ L  IVSES 
Sbjct: 634 INAAKEMGATALFGEKYGENVRVVTM-----GDCSIELCGGTHLDNTAQVGLFKIVSESG 688

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEAITG+     +   D  + S+   LK  + N+  R + I EE + L+    
Sbjct: 689 VAAGVRRIEAITGRSVYQSIKDTDRLVASVVDILKTREDNLFERAKTIVEENKALEKELQ 748

Query: 776 KRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K ++++E+         +I  VN +++    +D   L+   D L+ K++SG+++L  +
Sbjct: 749 AIKAKMSMENADSVLDSKIEIKGVNLITNRYEGMDMDTLRQAADQLRDKLESGVVVLANV 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K +++   +++ +D+  +A ++ R  AK+ GG GG GRP+MAQ+G  + +K D+A+
Sbjct: 809 T-DGKINIVATASKEAIDKGAHAGNIVREVAKIAGGKGG-GRPNMAQAGASDISKLDEAL 866

Query: 890 AGVASFLK 897
           +     ++
Sbjct: 867 SAAKEIVE 874


>gi|270292493|ref|ZP_06198704.1| alanine--tRNA ligase [Streptococcus sp. M143]
 gi|270278472|gb|EFA24318.1| alanine--tRNA ligase [Streptococcus sp. M143]
          Length = 872

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/915 (36%), Positives = 499/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV +   VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVAENAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVL-APLALNAEYTLEIDTDRRLRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGRHATQAGSLNEVEFLRFDFTHFQAVTVEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEVNGYRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIVN-GRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLEAVAGKL 872


>gi|310829304|ref|YP_003961661.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308741038|gb|ADO38698.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 879

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 515/906 (56%), Gaps = 48/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  L S  L+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   LNEIREKFLAFFESKGHLRLKSFPLVPINDKSLLLINSGMAPMKPYFTGDEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D++NVG+T RH TFFEMLGNFSFG YFK+ AI  AW+  T+  ++D  
Sbjct: 66  CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFCTEVMEMDPE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++Y+++Y +DEEA  +W    G+  ++I+R+   DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 KIYVSIYLDDEEAHDIWHDEIGVPEERIVRLGKEDNFWEHGL-GPCGPCSELYYDRGEEY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RY+E WNLVF QF++  +     L   +IDTGMGLER+AT++Q   
Sbjct: 181 GCGSPDCAPGCECDRYVEFWNLVFTQFDKDEEGNYNPLANPNIDTGMGLERLATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N ++ID   H++    +  G+KY  N  + V+ RVI DH+RS +F+IADG++P NEGRGY
Sbjct: 241 NIFEIDTIGHILNYICKKAGVKYGENAQDDVSIRVITDHVRSVTFMIADGVMPGNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  E  +  +   +      AYPEL + +  I++ +R E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGMQELFLYDVAKEVVRVSADAYPELAEKQDYIQKLIRIEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL LL+  L  L   ++++  G  AFKLYDT+G P D+ ++I+  RGL  I    
Sbjct: 361 ETIDQGLSLLEKELDSLIEQEEKVFPGQGAFKLYDTYGFPYDLTKEIVEERGLTLI-ASE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A++EQR RAR               F+        +F+GY+ L              
Sbjct: 420 FEEAMQEQRERARKARAESELAVWADDPFNPLGPDALVEFVGYENLE------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +  +  ++   E+V E  +G+ V V+ D+T FYAE+GGQ+GD G  +  
Sbjct: 467 ----------ANGKIIGLISGEELVSEVHAGEDVLVLLDKTSFYAESGGQVGDKGQIVSG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +++TD +K +    +H+  V  G  +    +   ++ + R     NH++THLL  AL
Sbjct: 517 DRVIEVTDCKKGSLSRHIHYGKVVSGTFKMGEEVTTKVNRELRAATQRNHTSTHLLQKAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++PD LRFD  H +P+T  E + +E+ VN  I + + V     + +
Sbjct: 577 KQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTHEEKRQVEEIVNKAILEAMDVAIFETSID 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA + GA AL G KY + VRVV V     G  S  LCGG H++++ ++ +  I+SE+ + 
Sbjct: 637 DARSMGAMALFGEKYGEVVRVVKV-----GDFSIELCGGCHITNSAQVGMFKILSETGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI--HA 775
           AGIRRIEA TG  A  H+   D+ L   A  LK +  +++ +V E+ E+ +  + +    
Sbjct: 692 AGIRRIEAATGMNAVHHVEQMDDTLLETAEALKTNPDHLLEKVTELAEQSKHKEKVINEL 751

Query: 776 KRKLQLNVEDLSCHKIADVNFMS---HIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K K   N+      K+  ++ +      +  VD +EL+++ D L+ ++ SGI++L G   
Sbjct: 752 KHKFAGNMVMDIHQKVTVIDGVQTTIAEVEGVDMEELRNISDMLKDRMGSGIVLL-GTRG 810

Query: 833 EKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           ++K + +   T+D L   F+A  L +  A++ GGGGG GRP MAQ+GG    K  +A+  
Sbjct: 811 KEKVNFIATATKDILNKGFHAGKLIKEVAQIAGGGGG-GRPDMAQAGGKKPEKLGEALEK 869

Query: 892 VASFLK 897
               +K
Sbjct: 870 AKEIIK 875


>gi|190571072|ref|YP_001975430.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019592|ref|ZP_03335398.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357344|emb|CAQ54775.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995014|gb|EEB55656.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 860

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/902 (44%), Positives = 564/902 (62%), Gaps = 54/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE +PSS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNNHEQVPSSPLIPEHDPTLMFTNAGMVQFKNIFTGTQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTSRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSDDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHGN 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   +  E +R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 181 S-------ALHEDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERIAAVMQNVH 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  L+  S++  G      N V H++I DHLR+++FLIA+G+LP NEGR YVL
Sbjct: 234 DNYDIDLFSALVSKSQEYCG---NTENKVAHKIIADHLRAAAFLIAEGVLPGNEGRNYVL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCT-----EMGSAYPELIQAKLLIEETLRSEDE 356
           RR++RRA  Y  LLGY + L+  + PAL        MG AYPELI+AK LIE TL+SE+E
Sbjct: 291 RRLIRRAARYIHLLGYNDSLLNLVFPALIDGTSLAYMGDAYPELIRAKSLIETTLKSEEE 350

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL +G+ LLD   + L   + L+G+ AFKLYDT+G PLDI  DIL  R +   D  
Sbjct: 351 NFKDTLMKGINLLDKFTADLKSGDTLSGESAFKLYDTYGFPLDITLDILKERKI-NFDQK 409

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A++EQ+ RARA+  G G  + E++WF+L +++G T+F+GY+               
Sbjct: 410 GFDNAMKEQKERARANWTGSGEKSVEQVWFNLIDQFGKTEFVGYERDEVKD--------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAI 535
                       ++++  I  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG    
Sbjct: 461 ------------ATVLAIISSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGNFIK 508

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG  L + +  K    +++H  IVE G +R   ++  +I+ + R+ L  NHSATHLLH 
Sbjct: 509 SDGSTLTVENTNK-INDLYLHRCIVESGSVRKGDTVTASINKKRRQDLRRNHSATHLLHF 567

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV+Q GS + P+ LRFD +H+KP+T  +L S+ED VN +I +NL   T++  
Sbjct: 568 ALRKILGDHVTQKGSLVAPNRLRFDFSHNKPVTQDQLSSVEDIVNSLIRENLSTSTKVQG 627

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++AI  GA AL G KY D VRVV +        S  LCGGTHV  TGEI L  I +E S
Sbjct: 628 MDEAIDEGAMALFGEKYGDNVRVVKIG------DSKELCGGTHVERTGEIGLFKIAAECS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + + +RRIEA+TGQ A +++   +  LK +A  +K     ++ R+  + +E ++ ++   
Sbjct: 682 VASRVRRIEALTGQEAINYVRNNEISLKKVAECVKAPVNEIISRLSILSQERKEFEVKIK 741

Query: 776 KR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              K  ++VE +   +I  +NF+SH  + V    ++     LQ++    +I  + I K+ 
Sbjct: 742 NLYKKLISVETVKSTEINGINFVSHTFNNVPGSIIREFA--LQQQKPKTVIAFMVIEKD- 798

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           K  +++ V++DL ++ NA +L     +       GG   +AQ+G  N NK D AI  + S
Sbjct: 799 KTVLIVKVSKDLTNKINAKELVSTLTRRDC----GGNAELAQTGCDN-NKIDDAITAIHS 853

Query: 895 FL 896
            +
Sbjct: 854 KI 855


>gi|322389170|ref|ZP_08062731.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321144075|gb|EFX39492.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 872

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/915 (35%), Positives = 493/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPSVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G      ++  L      ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESSFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKD----VHAGNVIKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|56963357|ref|YP_175088.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|59798485|sp|Q5WHM8|SYA_BACSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56909600|dbj|BAD64127.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 876

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/909 (38%), Positives = 513/909 (56%), Gaps = 54/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + +S+R  F++FF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P    + 
Sbjct: 5   SSASVRQMFIDFFKEKGHSVEPSASLVPFEDPSLLWINSGVATLKKYFDGRVIPENPRIV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE+AI+ AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEQAIEWAWEFLTDKKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            Q RL +TV+ EDEEA++ W +  GL  ++IIR+    NFW + E GP GP SEIF+D+G
Sbjct: 121 PQERLSVTVHPEDEEAYRYWHQHIGLPEERIIRL--EGNFWDIGE-GPSGPNSEIFYDRG 177

Query: 181 ECIPGGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM +V
Sbjct: 178 PEYGDDPNDPELYPGGENERYLEIWNLVFSQFNHNADGTYTPLPKKNIDTGMGLERMVSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q+   N++ DLF  +I+A+E +    Y+       +VI DH+R+ +F + DG LP+NEG
Sbjct: 238 IQDTPTNFETDLFMPIIEATEALASTTYK-EADTAFKVIADHIRTVAFAVGDGALPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ +A+ +G   P M  L+P +   M   YPE+   +  I   +R+E+E
Sbjct: 297 RGYVLRRLLRRAVRFAKSIGIDRPFMYELVPVVGAIMKDFYPEVADKQDFIARVIRTEEE 356

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL +L  ++        E + G+ AF+LYDT+G P+D+ ++ +   GL  +D
Sbjct: 357 RFHETLNEGLAILSDIIEKAKATNKETIAGEDAFRLYDTYGFPIDLTEEYVHDEGLT-VD 415

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F+Q +E+QR RARA      S + ++  F   E    + F+GY+             
Sbjct: 416 RAGFDQEMEQQRQRARAARQESASMSVQEDVFG--EVKTPSVFVGYEHTETD-------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          +++  +V+  E VE+AV G  ++   D+TPFYAE+GGQ+ D G  
Sbjct: 466 ---------------AVITTLVRGKEKVEQAVQGDVIQFFLDETPFYAESGGQVADRGMI 510

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + D  +  + DV+K   G  +H A V  G + T       I+ + R  +  NH+ATHLLH
Sbjct: 511 VTDTGQAVVKDVKKAPNGQHLHTAEVTIGEISTGQQASARIEVRERLDIVKNHTATHLLH 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q GS ++ + LRFD +H   +T  EL+ IE+ VN+ + Q LPV   I 
Sbjct: 571 QALKDVLGEHVNQAGSLVSSERLRFDFSHFGQVTPNELQQIEEIVNEKVWQALPVDISIQ 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A A+GA AL G KY   VRVV V     G +S  LCGG HV +T EI L  I SES
Sbjct: 631 RLEEAKAAGAMALFGEKYGSEVRVVRV-----GDYSLELCGGCHVRNTAEIGLFKITSES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLI 773
            I AG+RRIEA+T + A   L  Q   LK  A  LK  +  +V  R+E + EE RK Q  
Sbjct: 686 GIGAGVRRIEAVTSKGAYQFLSEQTAILKDAAERLKAKRLSDVPQRIESLQEELRKAQRE 745

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +     +L   +         +I  V  ++  +   D++ L+S++D L++  +  +I+L 
Sbjct: 746 NESLTAKLGQAEAGNLNDQVKEIGGVAVIAAQVDAKDTEALRSMVDTLKQAHEKAVIVLA 805

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +  K A V  V    + + F+A  L +  A   GGGGG GRP MAQ+GG +  K D+A
Sbjct: 806 AKTGNKLAFVAGVTKPAIAEGFHAGKLIKEVAARTGGGGG-GRPDMAQAGGKDPAKLDEA 864

Query: 889 IAGVASFLK 897
           +A V  ++K
Sbjct: 865 LAYVHEYVK 873


>gi|237741671|ref|ZP_04572152.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229429319|gb|EEO39531.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 867

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/909 (36%), Positives = 509/909 (55%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGIT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYEKTEDEGKLLNLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                   K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 ETK-------------------------------DGKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFVGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS + P+ LRFD +H + +T+ +L  IE+ VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISY 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N E+A   GA  L G KY D+VRVV V        S+ LC GTH+ + G+I L  I+SE
Sbjct: 623 HNIEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCEGTHIDNIGKIGLFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A      +   L  +   LK +  N+V +VE+  E  ++ +  
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K +L + +         +I  V  +     +  +++L++++DA++ + +  II+L 
Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L+D+  A DL +  A+ + GG GGGR   AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLIDKIKAGDLVKKLAE-ITGGKGGGRADFAQAGGKDEEKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVRGIIE 863


>gi|257462579|ref|ZP_05626989.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317060231|ref|ZP_07924716.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313685907|gb|EFS22742.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 866

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/910 (36%), Positives = 510/910 (56%), Gaps = 58/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEECHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PAYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   L++ + ++T   Y  N     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKENNFETDLLFPLVEEAGRLTNSTYHENPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGQKELFLYKMVKKVVEQFAVAYPDLAANMENIQKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++    L+       L+G++ FK+YDT+G P ++ ++I   +G+A +
Sbjct: 356 EKFSNTLDQGIQLVNEQIALALQAGKTKLDGEITFKMYDTYGFPYELTEEICHEKGIA-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F + +EEQ+ +ARA    +     +       + +G T+F GY         +E  
Sbjct: 415 SQEEFLEKMEEQKEKARAARAVIMEKGQDSFIEKFYDTHGVTEFTGYH------SSQEKA 468

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K+L                         V     G  + ++FD+TPFYAE+GGQ+GD G 
Sbjct: 469 KLLN------------------------VRTREDG-TLLLIFDKTPFYAESGGQVGDRGM 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  + ++ DV+K+ E IF+H      G L+      L +D + R  +S NH+ATHLL
Sbjct: 504 IFSNAFQGKVLDVKKQKE-IFIHVVESISGELKEGEECSLEVDMKYRAAVSKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  + LRFD +H + +T  ++K +E+ VN+ I++ + V    
Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIKLVEERVNEKISEAIAVEISH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A A GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE
Sbjct: 623 KSMEEAKACGAMMLFGDKYGDTVRVVDVPG-----FSTELCGGIHVENIGHIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A   +    E L+  A+ LK     +V +VE++ +E ++    
Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENMEILQKSATLLKTESSLLVEKVEKVLQEEKEKSRE 737

Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K ++  ++         ++A          +    +L+ ++D ++ K ++ I++L 
Sbjct: 738 IASLKEKIAKQEAEALYSHMLEMAGAKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S+  K S  + V++ L  ++ A +L ++ A+ + GG GGG+P  AQ+GG +  K  +A
Sbjct: 798 STSE--KLSFAVGVSKALTSKWKAGNLVKILAE-ITGGKGGGKPDFAQAGGKDKTKIAEA 854

Query: 889 IAGVASFLKK 898
           +  V   +++
Sbjct: 855 MEAVKKAIQE 864


>gi|254303692|ref|ZP_04971050.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323884|gb|EDK89134.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 867

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/909 (37%), Positives = 510/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L++TV+  D+EA ++W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVTVFTTDDEAERIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K NN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKANNFETDLLFPILEEAAKITGSQYGKNPEIDFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGYT+  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLANGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+ +     +    
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGITKFTGYEKIEDEGKLL--- 471

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                                       + EA  G K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 472 ---------------------------SIREAKDG-KYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDSFEAKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDIVKRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS +  + LRFD +H + +T+ +L  IED VN+ I + + V    
Sbjct: 563 HKALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVAVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  IVSE
Sbjct: 623 HTIEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
             I AG+RRIEA TG  A      +   LK +   LK +  N+V +VE+  E  R  + +
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEREEANILKDIEKKLKATNINLVEKVEKTLETLRDTEKE 737

Query: 772 LIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K+KL L           +I     +     +  +++L++++D ++   + GII+L 
Sbjct: 738 LETLKQKLALFETKSAISDMEEIGGAKVLIATFKDKSTEDLRTMIDTIKDNNEKGIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K S  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLSFAVGVTKTLTDKVKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVREIIE 863


>gi|312867236|ref|ZP_07727446.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311097365|gb|EFQ55599.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 872

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/915 (35%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG     +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDFIEKII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL+ G      ++  L      ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESSFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKD----VHAGNVIKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|257898621|ref|ZP_05678274.1| alanyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|257836533|gb|EEV61607.1| alanyl-tRNA synthetase [Enterococcus faecium Com15]
          Length = 880

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/917 (38%), Positives = 511/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEIAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVAAIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +           I+    ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKDPETISGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     +L +
Sbjct: 863 PAGIPDALKAAKEWLAQ 879


>gi|269792643|ref|YP_003317547.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100278|gb|ACZ19265.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 882

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 513/908 (56%), Gaps = 49/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL FF++ G    PS+SL+P +DP+L+FT +GMVPFK  F G ++P  + VT
Sbjct: 5   SGNELREMFLSFFEEKGCVRYPSASLVP-DDPSLLFTIAGMVPFKPYFLGIKEPKERRVT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND+DNVGRT RHHTFFEMLGNFSFG YFK   I  AW+ LT+   +D 
Sbjct: 64  TAQKCIRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWEFLTQRVGMDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY+TV+ +D+EA  +W    G+  D+I R+   DNFW+    GPCGPCSEI +DQG  
Sbjct: 120 DRLYVTVFRDDDEAESIWMSSVGVPKDRIFRMGEEDNFWAAGPVGPCGPCSEIIYDQGPE 179

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +RY+E+WNLVFMQ+ +        LP+ +IDTGMGLER+++V+Q  
Sbjct: 180 FSCGKPSCGVGCDCDRYLEVWNLVFMQYNRDEAGNLTPLPRKNIDTGMGLERLSSVVQWV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            ++++ DLFK +I  + Q++G+ Y       +  RVI DH+R+++F++ADG+LP+NEG G
Sbjct: 240 RSDFETDLFKPIIDRACQISGVAYGSSPQGDLAVRVISDHIRAAAFMVADGVLPSNEGPG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR + + RLLG   P ++ +LP +   MG  Y EL++ +  I + L  E+ RF
Sbjct: 300 YVLRRLIRRTIRFGRLLGIDRPFLLEVLPVVEQVMGGHYGELVEHRSTINQVLELEESRF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL++G  LL+  +  +      +  G+VAF+LYDT+G PL++  ++   +GL+ +DI 
Sbjct: 360 LRTLEQGSALLEEEVRRVRSRGLSVFPGEVAFELYDTYGFPLELTSEMCQEQGLS-VDIE 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F +A+E QR  AR+ S    +  T  ++  +  K G  +FIGYD   G           
Sbjct: 419 AFERAMERQRELARSGSKHASAAVTRTVYSDVL-KAGRIRFIGYDSEEG----------- 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V A+V++GE+++ A  G +VEV  D TPFY E GGQ+GD G    
Sbjct: 467 ------------EARVVALVREGEMIQSAREGDRVEVFLDVTPFYGEKGGQVGDRGEIRW 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG   Q+ D Q   +G+  H A + +G LR    +   +D + R  +  +H+ATH+LH A
Sbjct: 515 DGGLAQVEDAQCPMDGLTSHLATLVQGELRVGQRVFCRVDGERRWHIRRHHTATHILHEA 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q+GS +     RFD  H  P++  E+  +ED VN +I ++  V T   + 
Sbjct: 575 LGRVLGGHVRQSGSWVGDGFFRFDFNHFSPLSDEEIARVEDLVNQVILEDRRVTTLETSM 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           + A   GA AL   KY   VRVVSVE       S+ LCGGTHVSS+G+I L  I  E  I
Sbjct: 635 DSAREMGAKALFDEKYGQVVRVVSVEG-----FSTELCGGTHVSSSGQIGLFKIQREEGI 689

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRI A  G  +        E +K  +S L V    V  R+ ++  E + L+    +
Sbjct: 690 GSGLRRITATAGLASLEAYRRAAEVVKGASSALGVEAETVRDRIMDLMREVKSLERELRQ 749

Query: 777 RKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            +LQ+  E L        ++  +  +S +  +    EL+++ D++++     + +L+   
Sbjct: 750 LRLQVKSEGLKRALEAPQEVKGIKVLSFLTEDSSPDELRAMGDSVREMYPDSVCVLIS-R 808

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K  V+++ ++  + +   A  L +     L G   GG+ + AQ GG   ++ +  + 
Sbjct: 809 NGGKFMVIVMCSDGAVSKGVKAGSLIKSLGA-LWGFNAGGKANTAQGGGEWTDRMEGLLR 867

Query: 891 GVASFLKK 898
            +   + +
Sbjct: 868 SMEEQVSQ 875


>gi|325679252|ref|ZP_08158839.1| alanine--tRNA ligase [Ruminococcus albus 8]
 gi|324109038|gb|EGC03267.1| alanine--tRNA ligase [Ruminococcus albus 8]
          Length = 885

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/905 (34%), Positives = 470/905 (51%), Gaps = 42/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++++ +R ++L+FF+  G     S  L+P ND +L+   +GM P K  FTGQE P    +
Sbjct: 4   TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T RH T+FEMLGNFSFG YFK+ AI  AW+ +T    L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+++VY++D+EA K+W +  G+  D I+R+   DNFW     GPCGPCSEI+FD+GE
Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q 
Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +D+D  K +     ++ G +Y  E    V+ RVI DH+R+ +FL +DG+LP+NEGR
Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGKEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + +LLG     +  L+  +       Y EL +    I + L +E++ 
Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  T+DRG+ +LD  +  L       L+G+  FKL DT+G PLD+ ++IL  +GL   D 
Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLTA-DE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   +E+QR  AR      G    E+  F   +K  +T+F GYD              
Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYDKTED---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + ++  +    +++E A     V +V DQT FYAE+GGQ GDTG   
Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQAGDTGVIE 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               + ++ D QK   G F     V  G L    ++   +D   R     NHS  HLL  
Sbjct: 516 TATGKAEVLDTQKAVGGKFALKVKVTEGALTKGQAVTFKVDKAKRLATMRNHSCAHLLQS 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL T+LG HV Q G  +    LRFD +H + +T+ E   +E  VN  I   L +    M 
Sbjct: 576 ALRTVLGEHVHQAGQLVDSQRLRFDFSHFEAMTADEKAQVEALVNKYIFDALDITMEEMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL G KY + VRVV++        S   CGGTH+ +T +I L  I+SE+S
Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMGDRANAA-SIEFCGGTHLDNTSKIGLFKIISENS 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIH 774
           + +G+RR+EA+TG      L    E +   A  LK  +   +V R   + +E + L+   
Sbjct: 695 VASGVRRVEAVTGTGVLELLNSNIETINKAAETLKLNNPAELVSRCGAVMQEIKGLEKER 754

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              +  +          +   +  V+  +  ++ V    L+ + D L+    + I+++  
Sbjct: 755 DSLETAMANMRAKSVLENAVDVKGVSVATAQLNGVKPDVLRKMADELKAANDNVIVVMTT 814

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ +K   V+    + +    +A  +A   A  L  G GGGRP  A +G  + +    A+
Sbjct: 815 VNGDKGNIVVAAGKDAVAKGAHAGKIAGKIAA-LTNGKGGGRPDSAMAGVGDVSLIASAL 873

Query: 890 AGVAS 894
              A 
Sbjct: 874 EKAAE 878


>gi|261207793|ref|ZP_05922478.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289566245|ref|ZP_06446677.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294616584|ref|ZP_06696360.1| alanyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|294617900|ref|ZP_06697509.1| alanyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|260078176|gb|EEW65882.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289161952|gb|EFD09820.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291590534|gb|EFF22267.1| alanyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|291595845|gb|EFF27129.1| alanyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 880

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/917 (37%), Positives = 510/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     ++ +
Sbjct: 863 PAGIPDALKAAKEWVAQ 879


>gi|28210757|ref|NP_781701.1| alanyl-tRNA synthetase [Clostridium tetani E88]
 gi|41018208|sp|Q896F2|SYA_CLOTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28203195|gb|AAO35638.1| alanyl-tRNA synthetase [Clostridium tetani E88]
          Length = 879

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/910 (37%), Positives = 524/910 (57%), Gaps = 50/910 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  ++ IR  +L FF+  GH  + S SL+P ND +L+  N+GM P K  FTG + P  
Sbjct: 1   MKNMGLNEIREAYLNFFEGKGHLRMESFSLVPKNDKSLLLINAGMAPLKPYFTGVQTPPK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VTT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +TK  
Sbjct: 61  SRVTTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKCEVIPWAWEFVTKSL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + +LY+T+Y +D+EA+ +W K + +   +I R+   DNFW + + GPCGPCSEI + 
Sbjct: 117 NIPKDKLYVTIYLDDDEAYDIWTKSTDIDPSRIFRLGKEDNFWEIGQ-GPCGPCSEIHYQ 175

Query: 179 QGECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +               + +  IE WNLVF QF++   +    L   +IDTGMGLERMAT+
Sbjct: 176 REGEKINSVEEFIKKSDDDEVIEFWNLVFTQFDKDENENYNRLAHPNIDTGMGLERMATI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   + +++D  K ++    ++  +KY  N    ++ RVI DH+RS +F+I+DGILP+N
Sbjct: 236 MQGVNSIFEVDTIKAVLDEISEIANIKYGENKEKDISLRVITDHVRSVTFMISDGILPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + +LLG     +  +   +      AY EL + +  I++ ++ E
Sbjct: 296 EGRGYVLRRLLRRASRHGKLLGIKGNFLYKVCKVVIENSHKAYKELKEKEEYIKKIIKLE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +T+D G+ +L+  +  L    +++L GD AFKLYDT+G P+++ ++IL  + +  
Sbjct: 356 EERFAETIDGGIQILNEYVDELINKGEKVLPGDKAFKLYDTYGFPIELTKEILEEKSI-D 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F + +E Q+ RARA         +E    +       T+F+GY  L         
Sbjct: 415 IDEGGFTKEMEAQKQRARAAREETNYMGSEDTIINKLPIELQTEFLGYSEL--------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          V + + AI++  E+VEE   G K  ++ D+TPFY+E GGQ+GDTG
Sbjct: 466 --------------SVEAKIIAIIKGEELVEELKQGDKGIIIVDKTPFYSEKGGQIGDTG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G  ++++I D +    G  +H   +  G ++ + ++ LT+D   R  +  NHSATHL
Sbjct: 512 ILAGKNVKVKIQDCRNNISGKILHFVEILEGSIKLQDTVNLTVDRLRRDAIRKNHSATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  I+G+H+ Q GS +    LRFD  H   +T  ELK++E  VN  I + +PV T+
Sbjct: 572 LHEALKKIVGAHIEQAGSFVDEHRLRFDFNHFSSLTKEELKNVEKLVNKKIMEVIPVNTK 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +MN E+A  SGA AL   KY+++VRVVS+     G  S  LCGGTHVS++GEI L  I+S
Sbjct: 632 VMNIEEAKESGAVALFDEKYDEKVRVVSL-----GDFSKELCGGTHVSNSGEIGLFKIIS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIE +TG  A  ++  ++  L+ L   LK S  +++ +     EE +  + 
Sbjct: 687 ETGVAAGVRRIEGVTGFNALKYIEEKEALLEGLCEVLKCSNKDIINKATSQIEEIKNKEK 746

Query: 773 I--HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + K KL    ++    +  ++  +  +S ++ ++D   L+ + D L+ KIQ G+++L
Sbjct: 747 EINNLKSKLASGSQEDILKNIKEVKGIKLVSGVLKDIDGGALRDLADKLRDKIQEGLVVL 806

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E K   + + T++ + +  +   + +  A + GGGGG GRP MAQ+GG N  KA+
Sbjct: 807 ASV-GEGKIQFVAMATKEAVAKGAHCGKIIKEVASIAGGGGG-GRPDMAQAGGKNPEKAE 864

Query: 887 QAIAGVASFL 896
           +AIA V   L
Sbjct: 865 EAIAKVEDIL 874


>gi|262283148|ref|ZP_06060915.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261400|gb|EEY80099.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 872

 Score =  860 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/916 (36%), Positives = 495/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP    +
Sbjct: 4   MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRIEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +                          
Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     +   +TDVQK   G  +H   V    L       L ID   R  +  N
Sbjct: 508 ADHGQILDATGNVVATVTDVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHCVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 IAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E
Sbjct: 682 LFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +              K+    +++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAAAGDVFKDVKKVKGHRYIASQVSVSDAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   ++    +D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLVASKAKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           N  K  + +  VA  L
Sbjct: 857 NQAKIQELLDAVAGKL 872


>gi|293553477|ref|ZP_06674105.1| alanyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291602354|gb|EFF32578.1| alanyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 880

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/917 (37%), Positives = 510/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKDPETINGKTIITAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     ++ +
Sbjct: 863 PAGIPDALKAAKEWVAQ 879


>gi|23099464|ref|NP_692930.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
 gi|33301696|sp|Q8EPS9|SYA_OCEIH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|22777693|dbj|BAC13965.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831]
          Length = 879

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/914 (36%), Positives = 520/914 (56%), Gaps = 58/914 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++  + IR  F++FF++  H + PS+SL+P  DPTL++ NSG+   K  F G+  P  
Sbjct: 1   MKSLTSAEIRQMFIDFFKEKSHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ A++ AW+ LT  K
Sbjct: 61  PRIVNAQKSIRT----NDIENVGYTARHHTFFEMLGNFSIGDYFKKEAMEWAWEFLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             + D+  L +TV+ ED+EA+ +W    G+  ++IIRI   +NFW + E GP GP +EIF
Sbjct: 117 WINFDEALLSVTVHPEDDEAYDIWLNDIGIPKERIIRI--EENFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+GE               E  RY+E+WNLVF QF          LPK +IDTGMGLER
Sbjct: 174 YDRGESYGNDPQDPELYPGGENNRYLEVWNLVFSQFNHNPDDTYTPLPKKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           + +++Q+   N++ DLF  +I+ +E+++  KY  +     + +VI DH+R+ SF I DG 
Sbjct: 234 LTSIIQQVPTNFETDLFMPIIRETERISKRKYGNSEAEDTSFKVIADHIRTVSFAIGDGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NEGRGYVLRR++RRA+ +A+ LG  EP M  L+P +   M   YPE+ +    I   
Sbjct: 294 MPSNEGRGYVLRRLIRRAIRFAKDLGVNEPFMYQLVPVVGDIMKDFYPEVQKDAGYISNV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+ERF +TL+ GL++L  ++    K   E+  G+  F+LYDT+G P ++ ++ +  +
Sbjct: 354 IKVEEERFHETLNDGLIILASIIEEERKKGSEVFPGEEVFRLYDTYGFPKELTEEYVEQQ 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ++   +++ + +QR RAR     + S   +   F+  E    + F+GYD L+    
Sbjct: 414 GFT-VNQAGYDKEMNKQRERARNARQKVDSMQVQDTIFT--EINVDSTFVGYDQLQK--- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + ++A+V+    +EEA  G  + V   +TPFYAE+GGQ+
Sbjct: 468 --------------------ETTIEALVKDKNQIEEANQGDVLYVFLKETPFYAESGGQV 507

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    +     ++DVQK   G  +H   ++ G  +    +   ++   R  +  NH+
Sbjct: 508 ADNGWIYSENASAYVSDVQKSPNGDHIHQIEIKEGSFKINQPVHAVVERTFRNHVIKNHT 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSHV+Q GS + P+ LRFD +H   +T+ EL+ IE  VN+ I ++LP
Sbjct: 568 ATHLLHQALKDVLGSHVNQAGSLVRPERLRFDFSHFHGVTAEELQQIELKVNEKIWESLP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V       ++A A GA AL G KY D VRVV +     G +S  LCGG HV +T EI L 
Sbjct: 628 VAIDSKKIDEAKAMGAMALFGEKYGDIVRVVQI-----GDYSIELCGGCHVINTAEIGLF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IV E+ I AG RRIEA+T ++A  +L  + + L + A  LK S+  +  R+E +  E +
Sbjct: 683 KIVQETGIGAGTRRIEAVTSKQAYDYLNTKLDLLHNSAQKLKTSEEQLPERIEGLQVELK 742

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             Q        +L+  +         +I+ V  ++  ++  D  +L+S+MD L++K+ SG
Sbjct: 743 DSQKQVDSLSAKLSNLEASSILDEVKEISGVPVLAQEVNVKDMNQLRSMMDELKQKLSSG 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +I+L       K  ++  VT+D+L++  +A ++ + +A V GGGGG GRP MAQ+GG + 
Sbjct: 803 VILLAA-ENNGKVQLVAGVTKDMLEKNMHAGNIVKQAATVCGGGGG-GRPDMAQAGGKDP 860

Query: 883 NKADQAIAGVASFL 896
           +K  +A+  V  ++
Sbjct: 861 SKIKEALQSVEQYI 874


>gi|289167595|ref|YP_003445864.1| alanyl-tRNA synthetase [Streptococcus mitis B6]
 gi|288907162|emb|CBJ21996.1| alanyl-tRNA synthetase [Streptococcus mitis B6]
          Length = 872

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESHFNYNASQLSSKLVAIVADNTEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTADELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKTPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +   K K            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENTELKEKAASAAAGDIFKDVKEVNAHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|257452890|ref|ZP_05618189.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317059432|ref|ZP_07923917.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313685108|gb|EFS21943.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 866

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/910 (35%), Positives = 503/910 (55%), Gaps = 58/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKREAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEDCHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PEYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  KY        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  +          L+G++ FK+YDT+G P ++ ++I   RG+A +
Sbjct: 356 EKFSNTLDQGIQLVNEQIEMALQAGKSSLDGEITFKMYDTYGFPYELTEEICNERGIA-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY        +   R
Sbjct: 415 SQEEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHSTEEKAKLLNIR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                    + ++FD+TPFY E+GGQ+GD G 
Sbjct: 475 Q-------------------------------KEDGTLLLIFDKTPFYGESGGQVGDHGS 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  + ++ DV+K+ E IF H   V  G         LT+D + R  +S NH+ATHLL
Sbjct: 504 ISSEAFQGKVLDVKKQKE-IFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  + LRFD +H + +T  +++ +E+ VN+ I++ + V    
Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A A GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE
Sbjct: 623 KTMEEAKACGAMMLFGDKYGDVVRVVHVPG-----FSTELCGGIHVENIGHIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A   +      LK  A  LK     ++ +VE++ +E ++    
Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKARE 737

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++  ++         +IADV        +    +L+ ++D ++ K ++ I++L 
Sbjct: 738 ITSLKDKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              +  K S  + V++ L  ++ A +L +++A+ + GG GGG+P  AQ+GG + +K ++A
Sbjct: 798 STFE--KLSFAVGVSKALTGKYKAGNLVKIAAE-ITGGKGGGKPDFAQAGGKDKSKIEEA 854

Query: 889 IAGVASFLKK 898
           +  +   +K+
Sbjct: 855 MEAIKKAIKE 864


>gi|313893025|ref|ZP_07826602.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442378|gb|EFR60793.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 871

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/900 (36%), Positives = 496/900 (55%), Gaps = 55/900 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +L+FF+  GH  L + SLIP NDP+L+   +GM P K  FTG+  P  + +TT 
Sbjct: 4   NELRQAYLQFFESKGHLKLDTFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+R G    DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   LD+ R
Sbjct: 64  QTCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TVY +D+EA+  W K  G+    I R+   DNFW + E GPCGP SEIFFDQG    
Sbjct: 120 LYVTVYPDDQEAYDTWHKDCGVEESHISRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176

Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
              P  +   + +RY+EIWNLVF QF +        L   +IDTG GLER+A+VLQ    
Sbjct: 177 CDDPNCAPGCDCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGCRT 236

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DL   +I+A+ +  G+ Y  N    V+ +VI DH R+ + LI+DG+LP+NEGRGYV
Sbjct: 237 NFETDLIYPIIEATAKRAGVTYNENPNTDVSLKVIADHARAVTALISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRI+RRA+ + RLLG     +  L+  +   +G     + + K  ++  +++E+ERF +
Sbjct: 297 LRRILRRAVRHGRLLGIEGIFLTPLVDVVVEILGPGIKSIAEKKDFVKRVVQNEEERFNQ 356

Query: 361 TLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL++GL LL+ ++  L   K  ++ G   FKLYDT+G P ++ ++I   RG   ID   F
Sbjct: 357 TLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQR RAR   +                               +K    D   L  
Sbjct: 416 EAAMKEQRERAREARVK----------------------------EDAKVATPDITFLKD 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +  ++  +  +S V  + +  + ++ A  G ++ ++   TPF+AE GGQLGDTG  +G  
Sbjct: 448 EELLEDESVKASSVLMVGKGAKRLQTAADGDEITIIVRTTPFHAEGGGQLGDTGFIVGPM 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++++ + ++  EG   H   V  G +     + L +D   R  ++ NH+ATHLLH AL 
Sbjct: 508 GKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVALEVDTNRRSAMARNHTATHLLHAALK 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG HV+Q GS +TPD LRFD TH  P+T  EL  IE  VN+ + +   +    M+ ++
Sbjct: 568 QILGDHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEVLKATDLAIAEMSMDE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY D VRVV V        S  LCGG+HV +T  +    + SE+ I +
Sbjct: 628 AKEKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFVGSFRLTSEAGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG+ A          ++ +A  LK     V  R+ ++  E ++      + +
Sbjct: 683 GVRRIEAITGRAALDAAKQDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELEQIR 742

Query: 779 LQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDA-LQKKIQSGIIMLVGISK 832
            +++    +        I DV F++  +      EL+ + D  L +   SG++++     
Sbjct: 743 KEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGAAMG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +  V++D++ +   A ++ + +A+ + GG GGGRP MAQ+GG    K  QA+  
Sbjct: 803 DDKVNFVCKVSKDVVAKGAKAGNIVKAAAQ-VAGGNGGGRPDMAQAGGKEPAKLMQALKA 861


>gi|70726302|ref|YP_253216.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|83305859|sp|Q4L6W5|SYA_STAHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68447026|dbj|BAE04610.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
          Length = 876

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 501/915 (54%), Gaps = 57/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  S IR  +++FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P  
Sbjct: 1   MKNLKASEIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+ LT   
Sbjct: 61  PRIVNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEN 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++  +LY+T++ ED EA+++W    GL   +IIRI    NFW + E GP GP +EIF
Sbjct: 117 WMGMEPEKLYVTIHPEDSEAYRIWNDEIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIF 173

Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +D+G+      P        E ERY+E+WNLVF +F          LP  +IDTGMGLER
Sbjct: 174 YDRGDEYGQDDPSEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
           MA+V Q    NY+ DLF  +I   E+V   KY  NN   +  +VI DH+R+ +F IADG 
Sbjct: 234 MASVSQNVRTNYETDLFMPIINEVEKVADKKYLVNNEHDIAFKVIADHIRTIAFAIADGA 293

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LPANEGRGYVLRR++RRA+ +++ L   EP M  L+  +   M   YP + +    I+  
Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           ++SE+ERF +TL  GL +L+ +L+     +  +NG  AFKLYDT+G P+++ +++     
Sbjct: 354 IKSEEERFHETLQEGLAILNNLLAKAKSSNNEINGSDAFKLYDTYGFPIELTEELASQEN 413

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           ++ +D+ +F + +++QR+RAR       S   +     LK     ++F+GY+        
Sbjct: 414 IS-VDMATFEKEMDQQRTRAREARQSSQSMQIQSEV--LKNITTESKFVGYETTDY---- 466

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +  ++  GE VE A  G+ V  +  +TPFYA +GGQ+ 
Sbjct: 467 -------------------QTTLTDLIYNGEKVESAEPGETVYFILKETPFYAVSGGQVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    +   +++T+V K   G  +H  +++ G +     +  +++   R+ +  NHSA
Sbjct: 508 DKGTVGNENFEIEVTEVTKAPNGQNLHQGVIQFGQVTINSDVDASVNRDERKDIQKNHSA 567

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  +LG HV+Q GS +  + LRFD +H  P+T  E+  +E  VN+ I + + V
Sbjct: 568 THLLHAALKEVLGEHVNQAGSLVESERLRFDFSHFGPMTQDEIDQVERRVNEEIWRGISV 627

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             + M   +A   GA AL G KY D VRVV++        S  LCGG HV +T EI L  
Sbjct: 628 NIQEMPINEAKQMGAMALFGEKYGDIVRVVNMAP-----FSIELCGGIHVDNTAEIGLFK 682

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768
           I+SES   AG+RRIEA TG+ A  HL     K  S+   +KV   N V  ++ ++ EE +
Sbjct: 683 IISESGTGAGVRRIEAFTGKSAFLHLEDIQNKFNSIKDQVKVKSDNQVFDKIVQLQEEEK 742

Query: 769 KLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            L     +R      L++   +    +I     ++  +   ++KE++  MD  + K Q  
Sbjct: 743 NLHKQLEQRNKEITSLKMGNIEDQIEEINGFKVLATEVEVSNAKEIRQTMDDFKSKQQDA 802

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           II+L     E K S++  V ++  D+  A D+ +  A ++ GG GGGRP MAQ GG    
Sbjct: 803 IIILASDLGE-KVSLIATVPKEQTDKIKAGDIIKNMAPLV-GGKGGGRPDMAQGGGTQPE 860

Query: 884 KADQAIAGVASFLKK 898
              +A+  +  ++KK
Sbjct: 861 NISEALRFIKDYIKK 875


>gi|322376246|ref|ZP_08050739.1| alanine--tRNA ligase [Streptococcus sp. M334]
 gi|321282053|gb|EFX59060.1| alanine--tRNA ligase [Streptococcus sp. M334]
          Length = 872

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/915 (36%), Positives = 503/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--KDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESRFNYEASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       LTID   R ++  NH
Sbjct: 509 DHGQILDESGKVVAIVTNVQKAPNGQALHTVEVL-APLALNQEYTLTIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|293569836|ref|ZP_06680923.1| alanyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587584|gb|EFF19461.1| alanyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 880

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/917 (37%), Positives = 511/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK +AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNKAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     ++ +
Sbjct: 863 PAGIPDALKAAKEWVAQ 879


>gi|239623766|ref|ZP_04666797.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521797|gb|EEQ61663.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 887

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/913 (36%), Positives = 501/913 (54%), Gaps = 60/913 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 14  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD  
Sbjct: 74  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVVGLDAD 129

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY ED+EAF +W K  G+ A +I +    DNFW     GPCGPCSE+++D+GE  
Sbjct: 130 RLYPSVYLEDDEAFDIWNKEIGIPAGRIFKFGKEDNFWEHGS-GPCGPCSEVYYDRGEQY 188

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  +   E +RYIE+WN VF QF+         L   +IDTGMGLER+A V+Q   
Sbjct: 189 GCGSPDCTVGCECDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + + +D  K L+    +++  +Y+ ++   V+ R++ DH++S +F+I+DGI+P+NEGRGY
Sbjct: 249 SLFTVDTNKALLDRVCELSHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + R LG     +  L   +       YPEL + +++I + L  E+++F 
Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAELSRTVIELCKDGYPELEEKQVMIFKVLSEEEDKFN 368

Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL++L  +   + K+    L+G  AFKLYDT+G PLD+ ++IL  +G  G+D   
Sbjct: 369 KTIDQGLMILGEMEEEMQKEGSRTLSGTNAFKLYDTYGFPLDLTKEILEEKGY-GVDEDG 427

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A++EQ+ +AR           +   +   +    T+F+GYD L              
Sbjct: 428 FDAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSITTEFVGYDKL-------------- 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  +  + E+V+    GQK  V+  QTPFY   GGQ GD G  + +
Sbjct: 474 ---------SAVSRITVLTTEDELVQALTDGQKGTVIVGQTPFYGTMGGQQGDVGVIVNE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D      G   H  I+ +G+L+ + S+ L++  +NR  +  NHSATHLL  AL
Sbjct: 525 NGEFKVEDTIHLQGGKVGHVGIMTKGMLKVDDSVTLSVCGKNRALICKNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS +    LRFD TH   +T  E+K +E  VN  I  +LPVVT IM  E
Sbjct: 585 RLVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPEEIKKVEALVNKEIQASLPVVTEIMTLE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY D VRVV +     G  S+ LCGGTHV++T  I    I+SE+ I 
Sbjct: 645 EAKKTGAMALFGEKYGDSVRVVEM-----GDFSTELCGGTHVANTNNIASFKILSEAGIA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T +    +    +  L   A   K +   ++ ++  + +E + L   + K 
Sbjct: 700 AGVRRIEALTSEGLMKYYEEMEAGLHEAAKAAKTTPAALISKIHALLDEIKSLNSENEKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L  + L        ++  V  ++  +S VD   L+S+ D L+ K+  G+++LV   +
Sbjct: 760 KSRLANDSLGDVMSQVKEVNGVKVLASRVSGVDMNGLRSLGDQLKDKLGDGVVVLVS-EQ 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSA------KVLGGGGGGGRPHMAQSGGPNGNKA 885
           + K +++   T+ +  +  +A +L +  A                   MAQ+GG N    
Sbjct: 819 DGKVNLMATATDAVQKKGAHAGNLIKAIAGLVGGGGGGRP-------GMAQAGGKNPAGI 871

Query: 886 DQAIAGVASFLKK 898
           + A+      +++
Sbjct: 872 EDALKKAVEVVEE 884


>gi|307701921|ref|ZP_07638930.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616736|gb|EFN95924.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 872

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/915 (36%), Positives = 502/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVDVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILGSH +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|257878215|ref|ZP_05657868.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257881004|ref|ZP_05660657.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257889586|ref|ZP_05669239.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260559260|ref|ZP_05831446.1| alanyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293559338|ref|ZP_06675880.1| alanyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294622256|ref|ZP_06701310.1| alanyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939752|ref|ZP_07846974.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314941747|ref|ZP_07848624.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948292|ref|ZP_07851684.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314952380|ref|ZP_07855387.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314992001|ref|ZP_07857454.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314995701|ref|ZP_07860791.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|257812443|gb|EEV41201.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257816662|gb|EEV43990.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257825946|gb|EEV52572.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|260075017|gb|EEW63333.1| alanyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291598227|gb|EFF29322.1| alanyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291606702|gb|EFF36094.1| alanyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313590092|gb|EFR68937.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593436|gb|EFR72281.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313595497|gb|EFR74342.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313599425|gb|EFR78268.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313640981|gb|EFS05561.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645273|gb|EFS09853.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 880

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/917 (37%), Positives = 511/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+ + N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     ++ +
Sbjct: 863 PAGIPDALKAAKEWVAQ 879


>gi|163814106|ref|ZP_02205498.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759]
 gi|158450555|gb|EDP27550.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759]
          Length = 887

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/903 (37%), Positives = 498/903 (55%), Gaps = 40/903 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEF +  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI   W+ LT+   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF +W K  G+SAD+I R    DNFW     GPCGPCSE+++D+GE  
Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVSADRIFRFGKEDNFWEHGA-GPCGPCSEVYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QF          L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G++YE +    V+ R+I DH+RS +F+ +DGI+P+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   +  E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELCEKKEYIFNKIDKEEESFN 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D GL +L   +       +++L+GD AFKLYDT+G PLD+ ++I+       +D   
Sbjct: 361 KTIDTGLAILKDYIEETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEIIEEE-GIEVDEAR 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +  Q+  AR           +   +        ++F+GYD L          K+  
Sbjct: 420 FTECMNIQKETARNARQTTTYMGADATVYEQLPVDMTSEFVGYDKL------TYKSKITA 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
               +       S++          +    G +  ++  +TPFYA  GGQ+GD G     
Sbjct: 474 ITTELGEGKDKKSVLA---------DTVSEGAQATIIVPETPFYATMGGQIGDKGIIKTK 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                + D  K   G   H   VE G L       LT+D +NR  +  NHSATHLL  AL
Sbjct: 525 NGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS + P  LRFD +H + +T  E+K +ED VN+ I  ++PV T IM  +
Sbjct: 585 KMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDVPVCTDIMTVD 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY ++VRVVS+     G  S   CGGTHV++TG I +  IVSE+ + 
Sbjct: 645 EAKKTGAMALFGEKYGEKVRVVSI-----GDFSKEFCGGTHVANTGVIGMFKIVSETGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG RRIEA+T   A  +    + +L   A   K     V  R+E++  E ++L   + K 
Sbjct: 700 AGTRRIEALTSIGALEYYRSMESELVEAAKAAKTDIHGVAARIEQLLAEVKELTNENKKL 759

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++  E       +      +  ++  I + D   L+++ D  + K+   I++L   +K
Sbjct: 760 KDKMAKEAAGDVLSNAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSIVVLAS-AK 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++ + T+  + +  +A ++ +  A ++GGGGG GRP+MAQ+GG + N  D A+A 
Sbjct: 819 DGKVNLIAMATDGAVAKGAHAGNIIKAVAGLVGGGGG-GRPNMAQAGGKDPNGIDAALAQ 877

Query: 892 VAS 894
             +
Sbjct: 878 AVT 880


>gi|160892619|ref|ZP_02073409.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50]
 gi|156865660|gb|EDO59091.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50]
          Length = 888

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/907 (38%), Positives = 517/907 (57%), Gaps = 40/907 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF+  GH  + S SLIP ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNQLRKMFLEFFESKGHLKMNSFSLIPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LTK   LD+ 
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWSWEFLTKVVGLDEN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y++D+EAF +W K  G++ +KI R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSIYEDDDEAFDIWNKEIGIAPEKIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G PG +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  
Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGHNNYTELVQKNIDTGMGLERLAVVVQDVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D  K L     ++ G+KY  +    V+ RVI DH+RS +F+ +DGILP+NEGRGY
Sbjct: 241 SIFDVDTIKALRDKVCEMAGVKYMEDEKTDVSIRVITDHIRSVTFMASDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG     +  L   +      AYPEL + K  I   + +E+E F 
Sbjct: 301 VLRRLLRRAARHGRLLGIEGRFLAELSKTVIEVSKDAYPELEEKKAHIFTCINTEEENFN 360

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+D+GL +L+G +  L     ++LNG+ AFKLYDT+G PLD+ ++IL  +G+  +D   
Sbjct: 361 KTIDQGLSILNGFVEELNNSGKKVLNGENAFKLYDTYGFPLDLTKEILEEKGIE-VDTEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+A+++QR  AR           +   +   +    ++FIGYD +  S        ++ 
Sbjct: 420 FNKAMDKQRETARKSRKVSNYMGADSTIYEDIDTALTSKFIGYDKVEAS------SNIIA 473

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   + V+S         E+V+    G    ++  +TPFYA  GGQ+GD G    +
Sbjct: 474 ITAEYKEGDQVTS---------ELVDVISEGTNGSIITAETPFYATMGGQIGDAGVIETE 524

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             R  + D  K A     H   VE G L+   +  L++    R  +  NHSATHLL  AL
Sbjct: 525 SGRFIVKDTIKVAGDKIAHLGYVESGELKNGSTAKLSVTADRRALICKNHSATHLLQKAL 584

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q GS ++ D LRFD TH + +T  E+  +E  VN+ I ++L V T +M+ E
Sbjct: 585 KMVLGDHVEQAGSYVSEDRLRFDFTHFQAMTPEEIAKVEAIVNEQIDKDLKVKTEVMSIE 644

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           DA  +GA AL G KY ++VRVVS+        S   CGGTHV +TG I    I+SE  + 
Sbjct: 645 DAKKTGAMALFGDKYGEKVRVVSM-----DDFSVEFCGGTHVPNTGVIGTFKIISEMGVA 699

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+T   A ++    +++LK+ A   K     +  ++E +  E + L   ++K 
Sbjct: 700 AGVRRIEALTSVGAFNYYKEMEDELKAAAKAAKAEPAKLAEKIETMLAEIKALTSENSKL 759

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L              I  V  ++  + + D   L+++ D  + K+ + +I+L   +K
Sbjct: 760 KDKLAKNSAGDALADAIDINGVKVLATSVEDTDMNALRNLGDDFKNKLGTSVIVLAS-AK 818

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K +++ + T+D + +  +A ++ + SA ++GGGGG GRP+MAQ+GG N      A+A 
Sbjct: 819 DGKVNLIAMATDDAVKKGAHAGNIIKASAALVGGGGG-GRPNMAQAGGKNPAGIADALAK 877

Query: 892 VASFLKK 898
                K+
Sbjct: 878 AVETAKE 884


>gi|24379123|ref|NP_721078.1| alanyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|41018215|sp|Q8CWY0|SYA_STRMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24377026|gb|AAN58384.1|AE014908_10 putative alanyl-tRNA synthetase (alanine--tRNA ligase)
           [Streptococcus mutans UA159]
          Length = 872

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/915 (35%), Positives = 499/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++   H + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FDL
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPEWFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIE-CGVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L+ L     + L G   F+LYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA+ +  GS   +    S                      
Sbjct: 417 FK-IDHQGFQAAMKEQQERARANVVKGGSMGMQNETLS---------------------- 453

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                +  +         + S +  I+   + +E    GQ V +VF +TPFYAE GGQ+ 
Sbjct: 454 ----NITEKSTFNYEKEALDSSLSVIIADNKRIEAVSEGQ-VLLVFSETPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++TDVQK   G  +H   V  G L    +  L ID++ R ++  NH
Sbjct: 509 DHGLIKNDKGDTVARVTDVQKAPNGQALHTVDVL-GSLSVGTTYHLEIDHERRNRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I + +
Sbjct: 568 TATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIWKAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL G KY   VRVVS+     G +S  LCGGTH+ +T EI +
Sbjct: 628 PVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK +A+ LK  Q   V  +V  + ++
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIATTLKAPQMNQVANKVASLQDQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +A  K K            + +VN + +I S+V   D+  L++  D  ++K  
Sbjct: 743 LHKLQKENAELKEKAAAVAAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADKWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   ++D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVASIGKKVNVLVASKSKD----IHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +     IA VA  L
Sbjct: 858 ASAIKDLIAAVAENL 872


>gi|219847052|ref|YP_002461485.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219541311|gb|ACL23049.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 894

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/920 (39%), Positives = 516/920 (56%), Gaps = 57/920 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TF+ FF+++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFISFFKRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYTRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI+LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIRLAWKLLTEEFQLPV 124

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+        D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++        LP+ S+DTGMGLERMA 
Sbjct: 184 IYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + YD DLF  +I     V G   ++   +   +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYDTDLFVSIINRIIAVRGSDEEHYQAHRSAYRAIADHSRAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++  +  +MG  YPEL+  + LI      
Sbjct: 301 NLGRPYVLRRILRRAAYQGRTIGFERPFLAEVITTVIDQMGEVYPELVNRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L+ V+  +    + ++ G  AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLSRLNAVIEQVRTRGETVIPGTDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA + G   G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAAGKRGGEAD-LWAEL--DLPASHFTGYERLSDR----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  ++  G+ +  A+ G++V++V D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------ATVIGMLADGDAITSAMVGRQVQIVLDTTPFYAESGGQVGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GVLVGPEGSVQIEDTRRPLPGLIVHYGRVVSGTIHVGDQVQATVDMVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+KP+   EL+ IE  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKPLDPEELREIERRLNAWVRADASVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGVHSSALCGGTHVSSTGE 704
            I     AIA GA AL G KY D VRVV++E        E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYRSAIARGAIALFGEKYGDTVRVVTIERGTGIENGEYASRDSLELCGGTHVNRTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ E SI +GIRR+EA+TG+ A      Q + L+ LA+ +      ++ R+E + 
Sbjct: 694 IGFVRILGEGSIGSGIRRVEALTGRGAELWAEEQAQTLRDLAARINAQPAQLIERIEALL 753

Query: 765 EEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKK 819
            E R+   +L   + KL   + D   H+   V  +  + +EV++     L+ + + L+ K
Sbjct: 754 AENRQRRQELEALRSKLAREMLDTLVHRTQTVAGIPLLAAEVEADSVERLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + S +I+L G     K  +L +VT DL+ R  NAV + +  A ++GGGGG GRP +AQ+G
Sbjct: 814 LGSAVIVL-GAQINGKPQLLTIVTSDLVKRGLNAVHIVKPLAAIVGGGGG-GRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G   ++   AI      L +
Sbjct: 872 GRTPDRLAAAITAAVDVLAE 891


>gi|298229736|ref|ZP_06963417.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254206|ref|ZP_06977792.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502666|ref|YP_003724606.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238261|gb|ADI69392.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A]
          Length = 872

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEGTT-SLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|332074964|gb|EGI85436.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
          Length = 872

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 502/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNHNASQLSSKLVAIVADNAEVEAVSEGTT-SLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|225860836|ref|YP_002742345.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727156|gb|ACO23007.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389569|gb|EGE87914.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
          Length = 872

 Score =  858 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNHNASQLSSKLVAIVADNAEVEAVSEGTT-SLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|322375479|ref|ZP_08049992.1| alanine--tRNA ligase [Streptococcus sp. C300]
 gi|321279742|gb|EFX56782.1| alanine--tRNA ligase [Streptococcus sp. C300]
          Length = 872

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/915 (35%), Positives = 494/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PADKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + +   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSDYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M + YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMENYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAKGNVVATVTDVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|296327899|ref|ZP_06870435.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296155033|gb|EFG95814.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 867

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/908 (36%), Positives = 508/908 (55%), Gaps = 58/908 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWVEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 VQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGYT+  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLINGKNKLDGEISFKLYDTYGFPYELTEEIAEERGIT-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                  +K  ++FD+TPFY E+GGQ+GD G 
Sbjct: 475 EAK-------------------------------DRKYLLIFDKTPFYGESGGQIGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H    E+GI     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFEAKVLDVQKQKD-IFIHTVKFEKGIPEENKTYKLEVDVIKRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  ++G+HV Q GS +  + LRFD +H + +T  +L  IED VN  I + + VV   
Sbjct: 563 HKALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I SE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771
             I AG+RRIEA TG  A      + + LK++   LK +  N+V +VE+  E  +  + +
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADILKNIEKKLKATNSNLVEKVEKNLETLKDTEKE 737

Query: 772 LIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L   K+KL L           +I  V  +     +  +++L++++D ++   +  I++L 
Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854

Query: 889 IAGVASFL 896
              V   +
Sbjct: 855 FKEVREII 862


>gi|19704032|ref|NP_603594.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|22096188|sp|Q8RFJ8|SYA_FUSNN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19714224|gb|AAL94893.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 867

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 511/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF +  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGNYFKKEAIKWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +L++TV+  D+EA K+W +      ++I+R+  ++N+WS   TG CGPCSEI  D G
Sbjct: 116 NKDKLWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A V+
Sbjct: 176 IQYGGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q KTNN++ DL   +++ + ++TG +Y  N     + +VI DH R+ +FL+ DG++P+NE
Sbjct: 236 QGKTNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGY+LRRI+RRA+ + RLLGY +  M  ++  +  +   AYP+L +    I + ++ E+
Sbjct: 296 GRGYILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEIAYPDLRKNVENIRKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  + +L       L+G+++FKLYDT+G P ++ ++I   RG+  +
Sbjct: 356 EKFSNTLDQGIQLVNQEIDNLLTNGKNKLDGEISFKLYDTYGFPYELTEEIAEERGVI-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +KYG T+F GY+       +   R
Sbjct: 415 LREEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEKTEDEGKLLSLR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                  +K  ++FD+TPFYAE+GGQ+GD G 
Sbjct: 475 EAK-------------------------------DRKYLLIFDKTPFYAESGGQVGDQGK 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D    ++ DVQK+ + IF+H   +E+G+     +  L +D   R   + NH+ATHLL
Sbjct: 504 IYSDNFAGKVLDVQKQKD-IFIHTVKLEKGMPEENKTYKLEVDVVKRLDTAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  I+G+HV Q GS +  + LRFD +H + +T  +L  IED VN  I + + VV   
Sbjct: 563 HKALREIVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E+A   GA  L G KY D VRVV V        S+ LCGGTH+ + G+I L  I SE
Sbjct: 623 HSIEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRK 769
             I AG+RRIEA TG  A      + + LK++   LK +  N+V +VE+    + +  ++
Sbjct: 678 GGIAAGVRRIEAKTGYGAYLVEKEEADILKNIEQKLKATNSNLVEKVEKNLETLKDTEKE 737

Query: 770 LQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           L+++  K  L +         +I  V  +     +  +++L++++D ++   +  II+L 
Sbjct: 738 LEILKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIIVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                 K +  + VT+ L D+  A DL +  A+ + GG GGGRP  AQ+GG +  K   A
Sbjct: 798 STQ--DKLAFAVGVTKTLTDKIKAGDLVKKLAE-ITGGKGGGRPDFAQAGGKDEGKLLDA 854

Query: 889 IAGVASFLK 897
              V   ++
Sbjct: 855 FKEVREIIE 863


>gi|296876817|ref|ZP_06900865.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432319|gb|EFH18118.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 872

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/915 (35%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG     +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDFIEKII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL+ G      ++  L      ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDRDGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESSFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GGYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T++     +A ++ +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKE----VHAGNVIKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|303258979|ref|ZP_07344958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303261663|ref|ZP_07347610.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303264332|ref|ZP_07350252.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303265869|ref|ZP_07351766.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303268202|ref|ZP_07354001.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302637243|gb|EFL67731.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302639922|gb|EFL70378.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302642281|gb|EFL72629.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302644604|gb|EFL74854.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646144|gb|EFL76371.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 872

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREIEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEGTT-SLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|270307496|ref|YP_003329554.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS]
 gi|270153388|gb|ACZ61226.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS]
          Length = 876

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/905 (37%), Positives = 518/905 (57%), Gaps = 47/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    +T
Sbjct: 8   SSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++  
Sbjct: 68  SCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGE 181
            RL++TVY +D+EA  LW K  G+S  +I+R+   DNFW    ++GPCGPCSEI +D G+
Sbjct: 123 ERLWVTVYLDDDEAIALW-KEQGVSEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDFGQ 181

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++Q 
Sbjct: 182 EMGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQS 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297
           K N Y+ D+F  +++ + Q++G KY  +   +   R++ +H R  +FLIADG++P   GR
Sbjct: 242 KKNVYETDIFAPIVEKACQLSGKKYGCDTATDRALRIVSEHSRGITFLIADGVIPDKAGR 301

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + R LG  +P ++ +  A+   M   YPEL + +  + E + SE+ R
Sbjct: 302 GYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELKKRQTYVLEMIASEEAR 361

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL  GL LL+ ++  + K   ++G  AFKLYDT+G P+++  +I   RGL+ +D+  
Sbjct: 362 FSETLATGLELLEEIVRQI-KGGQISGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDLGG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E QR++AR+                       T F+GY+L R             
Sbjct: 420 FEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEKTCFVGYELTR------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I  
Sbjct: 467 ----------QKSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R ++ +      G+F+H   V  G L+   S    ID + RR ++ NH+ATH+L  AL
Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVISGCLKISESAAAHIDEERRRDIARNHTATHILQTAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q GS +TP+ LRFD +H +P+T  E++  E+ VND I +NLPV    M   
Sbjct: 577 RQVLGEQVQQRGSVVTPERLRFDFSHLRPMTKDEIRRAEEFVNDKIRRNLPVYAEEMPYR 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+  G  AL G KY DRVRV+ V        S+ LCGGTHVS++GEI L  IVSESS+ 
Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRPAV---SAELCGGTHVSASGEISLFKIVSESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ A +++  Q + L  L+  L+ +    + ++ E+ EE   L+      
Sbjct: 694 AGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESLRKLAELKEEIDTLKKTVQNL 753

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + Q++  +             +  +   ++ V++  L+   D L+ K+ SG+I+L G   
Sbjct: 754 ERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVS 812

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K   L +VT DL+++ ++A ++ +  +++ GGGGG G+P+MAQ GG +  K D+A+  
Sbjct: 813 EDKPFFLCMVTPDLIEKGYHAGNIVKKLSQIAGGGGG-GKPNMAQGGGRDKAKLDEALQA 871

Query: 892 VASFL 896
           V   L
Sbjct: 872 VKGML 876


>gi|157150203|ref|YP_001450848.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|205830220|sp|A8AYI8|SYA_STRGC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157074997|gb|ABV09680.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 872

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/916 (36%), Positives = 497/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++R A  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRGASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +                          
Sbjct: 416 GMT-VDREGFEVAMKEQQERARASAVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +       + + S + AIV +   VE    G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQNITVESVFNYNASQLPSKLVAIVAENAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  N
Sbjct: 508 ADHGQILDATGNLVATVTDVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 IAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E
Sbjct: 682 LFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +            + +VN   +I+S+V   D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIVSQVSVSDAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K  +++   T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNALVASKTKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
           N  K  + +  VA  L
Sbjct: 857 NQAKIQELLEAVAGKL 872


>gi|16331117|ref|NP_441845.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2500959|sp|P74423|SYA_SYNY3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1653611|dbj|BAA18523.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 877

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/901 (38%), Positives = 511/901 (56%), Gaps = 50/901 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL FF    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+   +   TT Q
Sbjct: 12  EIRQQFLNFFADRQHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKSAEFPRATTSQ 70

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+ F L   RL
Sbjct: 71  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKSQAIAWAWELSTQVFKLPAERL 126

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V++ED+EAF +W+   G+ A +I R+  +DNFW    TGPCGPCSEI++D    + G
Sbjct: 127 VVSVFEEDDEAFAIWRDEIGIPAHRIQRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-G 185

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+  R+IE +NLVFMQ+ + N      L K +IDTGMGLERMA +LQ+  NNY+
Sbjct: 186 DEKLDLEDDSRFIEFYNLVFMQYNRDNAGNLTPLEKKNIDTGMGLERMAQILQKVPNNYE 245

Query: 246 IDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   +IQ +  + G+ Y        V+ +VI DH+RS   +IADGI  +N GRGYVLR
Sbjct: 246 TDLIFPIIQTAANIAGIDYAQANEKTKVSLKVIGDHVRSVVHMIADGISASNLGRGYVLR 305

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG        +           YP +++ + LIE+ L+ E+  F KTL
Sbjct: 306 RLIRRVVRHGRLLGINGEFTTKVAATAVQLAQPVYPNVLERQSLIEQELQREEAAFLKTL 365

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  +++       + G  AF LYDT G PL++ Q+I   +G+  +D+  F +A+
Sbjct: 366 ERGEKLLADLMAD--GVTEIAGADAFTLYDTFGFPLELTQEIAEEQGIT-VDVEGFEKAM 422

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           +EQ+ R++A    +     E +   L      T+F+GY  L+ S                
Sbjct: 423 QEQQERSKAAHETIDLTVQESLD-KLANHIHPTEFLGYTDLQSS---------------- 465

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  +IVKA++  GE+V++AV+GQ V++V DQTPFY E+GGQ+GD G   GD + ++
Sbjct: 466 -------AIVKAVLVGGELVDQAVAGQTVQIVLDQTPFYGESGGQIGDKGFLNGDNLLIR 518

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I DV K+  GIF+H   VERG ++   ++  TID   RR+   NH+ATHLL  AL  ++ 
Sbjct: 519 IEDV-KRESGIFIHFGRVERGTVQIGTTITATIDRACRRRAQANHTATHLLQSALKRVVD 577

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             +SQ GS +  + LRFD    + +T  EL+ IED +N  IA+       +M   DA A 
Sbjct: 578 EGISQAGSLVDFNRLRFDFNSPRAVTMEELQQIEDLINQWIAEAHQTEVAVMPIADAKAK 637

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  IV+E+ I AG+RR
Sbjct: 638 GAIAMFGEKYGAEVRVIDVPG-----VSLELCGGTHVANTAEIGLFKIVAETGIAAGVRR 692

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G     +L  ++  +K L   LK     +  RV ++ +E +  Q      K +L 
Sbjct: 693 IEAVAGPSVLDYLNVREAVVKELGDRLKAKPEEIPDRVHQLQQELKASQKQLEALKQELA 752

Query: 783 VEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           ++           + +   +   +  VD + LK+  + LQ+K+    ++L  I +E K S
Sbjct: 753 LQKSEQLLTQAQTVGEFKILVADLGTVDGESLKTAAERLQQKLGESAVVLASIPEEGKVS 812

Query: 838 VLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++   +  L    +  A       AK+ GGGGG GRP++AQ+GG + +K  +A+A     
Sbjct: 813 LVAAFSPQLVKTKQLKAGQFIGAIAKICGGGGG-GRPNLAQAGGRDASKLPEALATAKQT 871

Query: 896 L 896
           L
Sbjct: 872 L 872


>gi|257466745|ref|ZP_05631056.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917894|ref|ZP_07914134.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691769|gb|EFS28604.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 866

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/910 (35%), Positives = 503/910 (55%), Gaps = 58/910 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI  +W+ +T+   L
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+  D+EA K+W +      ++I+R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 PKDKLWVTVFTTDDEAEKIWIEDCHFPRERIVRMGESENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      RYIEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PEYGGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  KY        + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG  E  +  ++  +  +   AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TLD+G+ L++  +          L+G++ FK+YDT+G P ++ ++I   RG+A +
Sbjct: 356 EKFSNTLDQGIQLVNEQIEMALQAGKSSLDGEITFKMYDTYGFPYELTEEICNERGIA-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   +EEQ+ +AR+    +     +       +K+G T+F GY        +   R
Sbjct: 415 SQEEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHSTEEKAKLLNIR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +                                    + ++FD+TPFY E+GGQ+GD G 
Sbjct: 475 Q-------------------------------KEDGTLLLIFDKTPFYGESGGQVGDHGS 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +  + ++ DV+K+ E IF H   V  G         LT+D + R  +S NH+ATHLL
Sbjct: 504 ISSEAFQGKVLDVKKQKE-IFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV Q GS +  + LRFD +H + +T  +++ +E+ VN+ I++ + V    
Sbjct: 563 HKALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSH 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              E+A   GA  L G KY D VRVV V        S+ LCGG HV + G I L  IVSE
Sbjct: 623 KTMEEAKVCGAMMLFGDKYGDVVRVVHVPG-----FSTELCGGIHVENIGHIGLFKIVSE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I AG+RRIEA TG  A   +      LK  A  LK     ++ +VE++ +E ++    
Sbjct: 678 GGIAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKARE 737

Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               K ++  ++         +IADV        +    +L+ ++D ++ K ++ I++L 
Sbjct: 738 ITSLKEKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              +  K S  + V++ L  ++ A +L +++A+ + GG GGG+P  AQ+GG + +K ++A
Sbjct: 798 STFE--KLSFAVGVSKALTGKYKAGNLVKIAAE-ITGGKGGGKPDFAQAGGKDKSKIEEA 854

Query: 889 IAGVASFLKK 898
           +  +   +++
Sbjct: 855 MEAIKKAIEE 864


>gi|303254539|ref|ZP_07340643.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|301802125|emb|CBW34861.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302598507|gb|EFL65549.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455]
          Length = 872

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEGTT-SLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|260361824|ref|ZP_05774840.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|308114481|gb|EFO52021.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 788

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/833 (42%), Positives = 489/833 (58%), Gaps = 67/833 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL+FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y   
Sbjct: 3   MSTDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ LT    L 
Sbjct: 63  TTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--------DNFWSMAETGPCGPCS 173
             RL +TVY+ D+EAF +W K  G+ AD+IIRI           DNFW M +TGPCGPC+
Sbjct: 123 ADRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCT 182

Query: 174 EIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D GE I GG PG   E+G+R+IEIWN VFMQF +        LPK S+DTGMG+ER
Sbjct: 183 EIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ ++Q   +NY+ID+F+ LI+A+ +V G  YE  +  + RVI DH+RS SFLI DG++P
Sbjct: 243 ISAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ +   LG        L+  L   MG+A  EL + + ++E+ LR
Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLR 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E FG+TL+RG+ +L+  L +L   ++L+G+  FKLYDT+G P D+  D+   R  A 
Sbjct: 361 IEEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA- 418

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   F +A+EEQR RAR        G     + +  +    T+F GY   +GS      
Sbjct: 419 IDEEGFEKAMEEQRQRAREA------GQFGTDYNAAIKVDTQTEFCGYVGTKGS------ 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V A+  +G  V+   +G K  +V  +TPFYAE+GGQ GD G
Sbjct: 467 -----------------SSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAG 509

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +    ++ D QK    I  HH ++  G+L     +   +D + R  +S+NHSATHL
Sbjct: 510 EIRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV+Q GS +  + LRFD +H + +T+AELK +E  VN  I +N  + T 
Sbjct: 569 LHAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETN 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E A   GA AL G KY+D VRV+S+     G  S+ LCGG H S+TG+I L  I S
Sbjct: 629 VMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I AGIRRIEA+TG+ A   +  Q  K +               ++ E  ++ + L+ 
Sbjct: 684 ESGIAAGIRRIEAVTGEAALDAIEAQAAKYEE--------------KLAESAQKAKTLEK 729

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
              K K ++   +         ++     +   +   DSK L++++   + K 
Sbjct: 730 ELQKLKDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVTTSRTKW 782


>gi|325844825|ref|ZP_08168277.1| alanine--tRNA ligase [Turicibacter sp. HGF1]
 gi|325489012|gb|EGC91400.1| alanine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 873

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/912 (36%), Positives = 510/912 (55%), Gaps = 61/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+  GH + P + L+P NDP+L++ NSG+   K  F G+E P    +
Sbjct: 4   MTGSEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E A+   W+LLT  + F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D+  LY+TVY  D+E + LW K+ G+S D I+++    NFW + E GPCGP +EIF+D+
Sbjct: 120 FDKELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEY--NFWEIGE-GPCGPNTEIFYDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           G        G        E +RYIEIWN+VF Q+  +      E  +LP  +IDTGMGLE
Sbjct: 176 GTKYDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A V+Q    N+D DLF  +I+A+E+++G+KY        +VI DH+R+ +F +ADG L
Sbjct: 236 RVACVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            +NEGRGYVLRR++RRA+ Y + LG     M  L+P +   M   YP +     L+++ +
Sbjct: 296 LSNEGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE++RF +TL  G  +L  +++   +D+ ++G  AF LYDT+G P ++  +     G  
Sbjct: 356 KSEEDRFRQTLADGEKILTDLIAKC-EDKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+  +E QR RAR     + S  ++    +L      ++F+GY  L        
Sbjct: 415 -VDKEGFDAQMEAQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +S V  ++Q GE+V+        +V+ D TPFYAE+GGQ+ DT
Sbjct: 464 ---------------STTSNVILLLQNGEVVDSLTGA--GQVILDTTPFYAESGGQVADT 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        + +TDV K   G  +H   V+ G L     +V  +  +NR  L+ NH+ATH
Sbjct: 507 GMMTTSAANVMVTDVIKAPNGQHLHSVQVD-GTLSLNDEVVCQVQVENRLDLTKNHTATH 565

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE  VN+ I  ++PV  
Sbjct: 566 LLHQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEV 625

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E+A   GA AL   KY + VRVV       G +S  LCGG HVS+T EI L  I+
Sbjct: 626 FEKSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKII 680

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A  ++    E+  +++  LK     +  RVE I +E ++  
Sbjct: 681 SESGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAH 740

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K     L++     +  ++A +  ++  + +VD   L+ ++D  ++++ S +I+
Sbjct: 741 RENDSLKSKLSHLKMKEIVNNTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAVIV 800

Query: 827 LVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L     + K ++   VT D +    +A  + +  A + GGGGG GRP MAQ+G  +  K 
Sbjct: 801 LASAV-DGKVAISCGVTPDYVKQGVHAGKIVKEVATICGGGGG-GRPDMAQAGAKDATKI 858

Query: 886 DQAIAGVASFLK 897
           ++A+  V  +LK
Sbjct: 859 EEALKNVDEWLK 870


>gi|317495192|ref|ZP_07953562.1| alanyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914614|gb|EFV36090.1| alanyl-tRNA synthetase [Gemella moribillum M424]
          Length = 863

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/897 (35%), Positives = 508/897 (56%), Gaps = 52/897 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +L+FF + GH++ PS+SL+P +DP+L++ NSG+   K  F G+E P    +T  QK +R
Sbjct: 1   MYLDFFVEKGHKIEPSASLVPVDDPSLLWINSGVATLKKYFDGREIPENPRITNSQKSIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127
                ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K   L++ +L +
Sbjct: 61  T----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAIAWAWEFLTSEKWLALEKEKLSV 116

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE----CI 183
           TV+ ED EA+ +W+ + GL  D+IIRI    NFW + E GP GP +EIF+D+G       
Sbjct: 117 TVHPEDTEAYDIWRNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGPEADTWS 173

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
           P        E +RY+E+WN+VF Q+          LP  +IDTGMGLER+ +VLQ+   N
Sbjct: 174 PKEEMYPGGENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLERIVSVLQDVPTN 233

Query: 244 YDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +D DLF  +I+  E+++G KY       V  +VI DH+R+ +F IADG LP+NEGRGY+L
Sbjct: 234 FDTDLFIPIIREIEKLSGAKYGVSKEQDVAFKVIADHIRTVTFAIADGALPSNEGRGYIL 293

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA+ +A++LG     M  L   +   M   YP + ++   +++ +  E++RF +T
Sbjct: 294 RRLLRRAVRFAKILGLNSSFMYKLTDIVAEIMIDYYPNVKESVSFVKDVILKEEDRFHET 353

Query: 362 LDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           L  G  +L  + + +    ++++G+ AFKLYDT G P+++ ++     GL  +DI  FN+
Sbjct: 354 LHEGEAILTNIANEVKDTTKVISGEDAFKLYDTFGFPIELTEEYAEELGLT-VDIDGFNE 412

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E+Q+ RARA      S   +   ++     G ++F+GY  L                 
Sbjct: 413 EMEKQKERARASRHDDSSMQVQSDLYN--RIIGDSEFVGYTQL----------------- 453

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                   S ++  + ++  ++++      V+VVF++TPFYAE+GGQ+ D G  I  G +
Sbjct: 454 ----IEKSSKLLAIVDKEDNLLDKYTGADVVKVVFERTPFYAESGGQVADCGEIIALGFK 509

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++ DV+K  +   +H   V  G L       L ++   R  +  NH+ATHLL+ AL   
Sbjct: 510 GEVLDVKKLPDKRHIHFVKVVEGELLVGNEYGLVVNRNYRLNIEKNHTATHLLNEALRQQ 569

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           +G+H+ Q GS +T D LRFD+TH  P+T  E++ +E  VN+ I   L + T  M   +A 
Sbjct: 570 VGTHIKQAGSLVTDDKLRFDITHFAPLTKEEIERVEQEVNEQIWNALEIKTEEMPIAEAR 629

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             GA AL G KY D VRVVS+     G +S  LCGGTH +++ E+ +  I+SES + AG+
Sbjct: 630 KLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSSEVGIFKIISESGVAAGV 684

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+TG+ A  +L  Q++ L S+    K +  NV+ +V  +  E +KL       + +
Sbjct: 685 RRIEALTGRAAYEYLRSQEDTLSSVEKLTKSNSTNVIEKVSSLQVEIKKLTKEKEILQQK 744

Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           +   +L+       ++  V+ ++ ++   +   LK ++D  + K+++ +I    I  E K
Sbjct: 745 IANAELNNLVNDIKEVNGVSVLTSVVESENMNHLKQLVDNAKSKLENYVIAFASI-NEDK 803

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            + ++ V + + D++NA  L  + A  +  G GGGRP MAQ+G  N    ++A   +
Sbjct: 804 VNFVVAVDKAITDKYNAGKLVNVLA-TVCDGRGGGRPDMAQAGAKNKENINKAFEEL 859


>gi|46447153|ref|YP_008518.1| alanyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626678|sp|Q6MB06|SYA_PARUW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46400794|emb|CAF24243.1| probable alanyl-tRNA synthetase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 878

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/905 (38%), Positives = 510/905 (56%), Gaps = 44/905 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
             SIR  FLE+F+K+ H+++ SSS++P +DPTL+F N+GM  FK++F G+    Y    T
Sbjct: 3   TQSIRRQFLEYFKKHQHQIVSSSSVLPHDDPTLLFNNAGMNQFKDVFLGKSYRDYNRAAT 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK +AI+ AW++ T+ F  +  
Sbjct: 63  SQKCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKTQAIRFAWEVSTQVFGFEPE 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           R++ TV+ ED+E F+LW +   + A++I R    DNFW+M +TGPCGPCSE+ +D+G   
Sbjct: 123 RIWPTVFREDDETFELWTQY--VPAERITRFGEKDNFWAMGDTGPCGPCSELLYDRGSDY 180

Query: 184 PGG-LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                P     GER++E WNLVFMQF +Q    +  LPK SIDTG GLER+  +     +
Sbjct: 181 GNATKPSEDSSGERFLEFWNLVFMQFNRQTSGVQNPLPKPSIDTGAGLERVINLKMGVNS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            ++ D+ + +I   E ++G+ Y  +       RVI DHLR  SF IADG+ P+N  RGYV
Sbjct: 241 VFETDILRSIIAQIELLSGIAYHPQDQQSAAFRVIADHLRCLSFAIADGVQPSNVDRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LR+++RRA+ Y R L   +P +  +LP L + MGS YPEL++ +  I E L  E+E F +
Sbjct: 301 LRKVLRRAVRYGRTLKLEKPFLAEVLPQLVSTMGSDYPELVKGQDRIAEILTIEEEAFIR 360

Query: 361 TLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           TL RG  +L+ V+       +I++GD AFKL DT+GLP++ +  I    GL  +D   + 
Sbjct: 361 TLKRGGNILNQVIEKSRASHQIISGDDAFKLKDTYGLPIEEILLIAKDSGLK-VDEPRYQ 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q  EE + R+R     +     E I+    +  G T+F G+                   
Sbjct: 420 QLEEEAKQRSRHVHKTVHQIAGENIFADFVKVRGETKFAGF------------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                 N + S V  +   GE VEE  SGQ+  V   +TPFYAE GGQ+GDTG       
Sbjct: 461 ----TQNSLKSSVVGLFVNGEFVEEMQSGQEGLVFLSETPFYAEMGGQVGDTGTLENSNS 516

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +  + D     +G+  H   +  G L+    +  +ID + R++++ NH+ATHLLH AL  
Sbjct: 517 KFSVEDCVVPYKGLIAHKGKLNTGSLKNGEMITASIDKKRRQKIANNHTATHLLHWALHQ 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG H+ Q GS + P  LRFD +H K ++  E + IED VN  I +NLPV    +  E+A
Sbjct: 577 ILGEHIKQAGSVVDPQRLRFDFSHHKALSLEESRQIEDLVNQKIRENLPVKCYEIKYEEA 636

Query: 660 IASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                     G KY   VRV+ +       +S  LCGGTH S+ G I L  I+ ES I A
Sbjct: 637 QKKEDIKQFFGEKYGSTVRVIDI------DYSKELCGGTHTSALGNIGLFRILKESGIAA 690

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAK 776
           GIRRIEA+TG  A       ++ L++LA  LKV    V+ ++E++ EE ++   +L   K
Sbjct: 691 GIRRIEAVTGAEAELLQRQDEDLLRTLAQQLKVPIHQVLEKLEKLQEENKQFIAELKEIK 750

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +K    + +    KI  +   S +I E  +  +EL+  +D +  +I S +I+L     + 
Sbjct: 751 KKELNVLINGFIKKIEQLGNTSVLILETALSVEELRLCVDLISDQIPSAVIILGAAFPD- 809

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K  +L+ +++DL+    NA ++ ++   ++  G GGG+ H AQ GG       +A   + 
Sbjct: 810 KCQILVKISDDLVKQGINANEIIKILMPIVE-GSGGGKQHTAQGGGKKPAMLGEAFKQIR 868

Query: 894 SFLKK 898
            +LK+
Sbjct: 869 IYLKE 873


>gi|169833050|ref|YP_001694818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|205830228|sp|B1ICI3|SYA_STRPI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|168995552|gb|ACA36164.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
          Length = 872

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 502/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNHNASQLSSKLVAIVADNAEVEAVSEGTT-SLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QPKIQELLDAVAGKL 872


>gi|21673007|ref|NP_661072.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|41018235|sp|Q8KG04|SYA_CHLTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21646071|gb|AAM71414.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 885

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/929 (36%), Positives = 498/929 (53%), Gaps = 81/929 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF    H ++ S+ +IP  DPTL+FTN+GM  FK++F G+    Y   
Sbjct: 1   MNSREIRQSFLDFFAGKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+L+T+ + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTEVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE+FKLW+  + +    I++    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 KERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              GG P  +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+A VLQ K+
Sbjct: 181 DGSGG-PLVNVGDHRVIELWNLVFIQYDRQADGTLVPLPQKHVDTGMGFERVAAVLQGKS 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L     ++TG  Y    +  + +  RVI DH R+ +F ++DG +P NEGR
Sbjct: 240 SNYDSDVFAPLFDRITELTGTVYTASLDSPSDIAMRVIADHCRTLTFALSDGAMPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YA  LG  EP++  ++  L   MG  +PEL + +  +E+ +R+E+E 
Sbjct: 300 GYVLRRILRRAVRYAGTLGCHEPIIYKMVEVLVRTMGDVFPELEKQQATVEKIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL RG  + + V++ +       ++G  AFKLYDT G PLD+ + +    GL GID 
Sbjct: 360 FLVTLGRGTEIFNEVVADMKTAGSTTISGADAFKLYDTFGFPLDLTRLMAAEVGL-GIDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   + EQ++RAR    G      +   +        T F+GYD+L            
Sbjct: 419 AGFEHCMMEQKTRARMDRKGKMQMQDDGGEWQWFAPEAPTTFVGYDMLET---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                 +  +V   VSG K+ +V DQTPFYAE+GGQ+GD G   
Sbjct: 469 ----------------------EATLVAARVSGDKLLMVLDQTPFYAESGGQVGDHGTLE 506

Query: 536 GDGIRLQITDVQKKAEGIFVH----HAIVERGILRTEM-------SLVLTIDYQNRRQLS 584
             G RL +TD +K  E I       H  V    +           S+   +D   R    
Sbjct: 507 TAGYRLDVTDTRKDGEQIVHVVTSAHDKVRDCAVTPADVSFDGVVSVKAAVDRDRRVATE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS +TP+ LRFD +H   +++ EL+ +E  VN  I 
Sbjct: 567 RNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSAEELEQVEHEVNAEIR 626

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +   V     +  E+A+A GA A  G KY DRVRVV V        S  LCGGTHV + G
Sbjct: 627 KAASVTKHADVPYEEALALGALAFFGDKYADRVRVVEVPG-----ISIELCGGTHVGNIG 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEE 762
           +I ++ IVSESS+ AGIRRIEA+TG  A + L  +   L+ + + LK+      G +++E
Sbjct: 682 QIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRDLQEIKNLLKLKADEEAGPKIKE 741

Query: 763 IWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE + L     + +L      L        ++     M+  +  V   EL+    AL+
Sbjct: 742 LLEEKKALDKQLQESRLAGLLDRLAASLAGGEEVNGCRIMTERLDGVSGDELRQAAVALR 801

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLG-------GGGG 868
           +++   + +L G++ + K S++   +++ +   + +A  L + +A  +            
Sbjct: 802 ERVPCAVGLLCGVA-DGKVSLVAFASDEAVKSLKLDAGKLVKEAAASVKGGGGGKL---- 856

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                +A +GG      D+AI    + +K
Sbjct: 857 ----ELATAGGKEPAGIDKAIEVFVASVK 881


>gi|312898889|ref|ZP_07758277.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620051|gb|EFQ03623.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 868

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/905 (37%), Positives = 504/905 (55%), Gaps = 53/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF+   H  L S SL+P NDP+L+   +GM P K  FTG+  P    V
Sbjct: 4   MTGNEIRKAYLDFFESKKHLKLHSFSLVPENDPSLLLIGAGMAPLKPYFTGKLVPPSYRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+  +LD
Sbjct: 64  TTSQKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFLTEVLELD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+TVY EDEEA+ +W  I GL+ ++I ++   DNFW + E GPCGP SEIF+D G 
Sbjct: 120 TNKLYVTVYPEDEEAYDIWHNIVGLADERIFKL--EDNFWEIGE-GPCGPDSEIFYDLGP 176

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+EIWNLVF QF +        L K +IDTG GLER+A+V+Q+
Sbjct: 177 ERGCGKPTCNVGCDCDRYLEIWNLVFTQFNKTKDGSYEPLEKKNIDTGAGLERLASVIQQ 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           K +N++ DL   ++Q    V    Y      +  +VI DH+R+ + +I DGILP+NEGRG
Sbjct: 237 KESNFETDLLFPIMQRVIDVCHGDYNNKEQKIAVKVIGDHIRAVTMMIGDGILPSNEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ + R+LG  E  +  L+  +      AYPEL + K LI+  + +E+ +F
Sbjct: 297 YVLRRILRRAVRFGRVLGIEEAFLADLVDIVIDMYKEAYPELAERKELIKTVIATEEAQF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL +GL LL+ ++       +L G+  FKLYDT G P+++ ++I+   G+  ID   F
Sbjct: 357 SATLAQGLELLNAMIEDADGTGVLAGEKVFKLYDTFGFPVELTEEIVQEHGMT-IDHDGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++A++ Q+ RARA    + +                            K    D   L Q
Sbjct: 416 DKAMKAQQERARAARAKVSA----------------------------KVATPDTTGLDQ 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
              +   N V++ V  I   G  VE A     + ++ D+TPF+AE GGQ+GDTG   G  
Sbjct: 448 SALVKDENAVNARVVLIGIDGAAVERAEKDTAITIILDKTPFHAEGGGQIGDTGYITGPS 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            + ++TD +  A G+    AIV  G L     + +T+D      ++ NH+ATHLL  AL 
Sbjct: 508 GKAEVTDTKSLANGLTYMIAIVTEGSLSRGDEVDITVDKVRNLDIARNHTATHLLQAALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS +TP+ LRFD TH  P+T+ EL  +E  VN  I +N+ +    M  +D
Sbjct: 568 KVLGTHVNQAGSLVTPERLRFDFTHFSPMTNEELAEVEKEVNRQIMKNVDLEIEEMPVDD 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI  GA AL G KY D VRVV+V        S  LCGG+HV +T  I    IV ES    
Sbjct: 628 AIKKGAMALFGEKYGDIVRVVNVPG-----FSCELCGGSHVPNTSVIGSFRIVGESGTGT 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+TG+ A    +     L+  A+ LK  + ++  ++E++    ++ +   A+  
Sbjct: 683 GIRRIEAVTGKAAHERAVADAVLLQEAATLLKSKEADIPAKIEQLLTALKEAEREVAQLS 742

Query: 779 LQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L    L        +I  V+  +  ++   ++ L+ + D +  K+    I+L+G  + 
Sbjct: 743 HKLATSSLDDILAAKEEIHGVSVTAASVTVDSAEGLRDMADMVLDKVGG--IVLLGAVQG 800

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K S +  V ++L    ++A  + + +A   GGGGG GRP MAQ+GG +  K ++A+   
Sbjct: 801 DKVSFVCKVDKELTKQGYHAGKIVKAAAVAAGGGGG-GRPDMAQAGGKDPQKLEEALKAG 859

Query: 893 ASFLK 897
              ++
Sbjct: 860 KEAVQ 864


>gi|307705063|ref|ZP_07641945.1| alanyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621386|gb|EFO00441.1| alanyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDADALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++    +DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKIKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|293374254|ref|ZP_06620582.1| alanine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|292647087|gb|EFF65069.1| alanine--tRNA ligase [Turicibacter sanguinis PC909]
          Length = 873

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/912 (36%), Positives = 510/912 (55%), Gaps = 61/912 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L FF+  GH + P + L+P NDP+L++ NSG+   K  F G+E P    +
Sbjct: 4   MTGSEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YF+E A+   W+LLT  + F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D+  LY+TVY  D+E + LW K+ G+S D I+++    NFW + E GPCGP +EIF+D+
Sbjct: 120 FDKELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEY--NFWEIGE-GPCGPNTEIFYDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           G        G        E +RYIEIWN+VF Q+  +      E  +LP  +IDTGMGLE
Sbjct: 176 GTKYDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q    N+D DLF  +I+A+E+++G+KY        +VI DH+R+ +F +ADG L
Sbjct: 236 RMACVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            +NEGRGYVLRR++RRA+ Y + LG     M  L+P +   M   YP +     L+++ +
Sbjct: 296 LSNEGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           +SE++RF +TL  G  +L  +++   +D+ ++G  AF LYDT+G P ++  +     G  
Sbjct: 356 KSEEDRFRQTLADGEKILTDLIAKC-EDKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+  +E QR RAR     + S  ++    +L      ++F+GY  L        
Sbjct: 415 -VDKEGFDAQMEVQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            +S V  ++Q GE+V+        +V+ D TPFYAE+GGQ+ DT
Sbjct: 464 ---------------STTSNVILLLQNGEVVDSLTGA--GQVILDTTPFYAESGGQVADT 506

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        + +TDV K   G  +H   V+ G L     +V  +  +NR  L+ NH+ATH
Sbjct: 507 GMMTTSAANVMVTDVIKAPNGQHLHSVQVD-GTLSLNDEVVCQVQVENRLDLTKNHTATH 565

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE  VN+ I  ++PV  
Sbjct: 566 LLHQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEV 625

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
              + E+A   GA AL   KY + VRVV       G +S  LCGG HVS+T EI L  I+
Sbjct: 626 FEKSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKII 680

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES I AG RRIEA+TG+ A  ++    E+  +++  LK     +  RVE I +E ++  
Sbjct: 681 SESGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAH 740

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +   K     L++     +  ++A +  ++  + +VD   L+ ++D  ++++ S +I+
Sbjct: 741 RENDSLKSKLSHLKMKEIVNNTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAVIV 800

Query: 827 LVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           L     + K ++   VT D +    +A  + +  A + GGGGG GRP MAQ+G  +  K 
Sbjct: 801 LASAV-DGKVAISCGVTPDYVKQGVHAGKIVKEVATICGGGGG-GRPDMAQAGAKDATKI 858

Query: 886 DQAIAGVASFLK 897
           ++A+  V  +LK
Sbjct: 859 EEALKNVDEWLK 870


>gi|331266120|ref|YP_004325750.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326682792|emb|CBZ00409.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 494/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y ED++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PADKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAKGNVVATVTDVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + + N   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVNEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K    +  VA  L
Sbjct: 858 QAKIQDLLDAVAGKL 872


>gi|182684342|ref|YP_001836089.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|205830229|sp|B2IQK0|SYA_STRPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|182629676|gb|ACB90624.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|168487382|ref|ZP_02711890.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183569764|gb|EDT90292.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|307706847|ref|ZP_07643649.1| alanyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617720|gb|EFN96885.1| alanyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVDVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDEVAGKL 872


>gi|304440318|ref|ZP_07400207.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371070|gb|EFM24687.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 874

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/911 (37%), Positives = 507/911 (55%), Gaps = 50/911 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  FLEFF+   H +L S  LIP  D +L+   +GM P K  FTG+  P  
Sbjct: 1   MKNLGLHEIRKEFLEFFKSKDHLILKSFPLIPKQDKSLLLIGAGMAPMKKYFTGELTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V+T QKC+R G    D++NVG T+RH TFFEMLGNFSFG YFK  AI  AW+ LT+  
Sbjct: 61  KRVSTCQKCIRTG----DIENVGLTDRHATFFEMLGNFSFGDYFKHEAISWAWEFLTEHL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +L + +L++TV+ EDEEA+K+W+    +  ++I+++   DNFW + E GP GPCSEI+ D
Sbjct: 117 ELPKDKLWVTVFYEDEEAYKIWRDEIHIPEERIVKMGKEDNFWEL-EVGPSGPCSEIYVD 175

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      E +R+IE+WNLVF QF++        L   +IDTGMGLER+ATV
Sbjct: 176 RGEEYGCGDPDCKPGCECDRFIEVWNLVFTQFDKDEAGVYHPLAHPNIDTGMGLERIATV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N ++ID  K++I+  E+++  KY+ +N   ++ RVI DH R+ +F+I+D + P+N
Sbjct: 236 LQNTNNIFEIDAIKNIIEKIEELSNYKYKTDNKKDISVRVITDHARAMTFMISDTVRPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  +   +       Y +L + +  I+E +R E
Sbjct: 296 EGRGYVLRRLIRRAARHGRLLGIKRAFLSEIADLIIDSWSVEYDDLKENREKIKEVIRIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F +T+D+G+ +L+  L  L K+  ++L GD AFKLYDT+G P+D+  +IL   G   
Sbjct: 356 EEKFLETIDQGMNILNSYLEELDKENTKVLPGDKAFKLYDTYGFPIDLTIEILEDSGYE- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++ +EEQR RAR        G T K      E    T+F GY            
Sbjct: 415 VDRKGFDENMEEQRRRARESRDHDQIGWTSKESEHYYEDLN-TEFTGYSDDESD------ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  IV  GE+V+ A  GQ+   V D+TPFY E GGQ+GD G
Sbjct: 468 -----------------SKIVRIVLNGEVVDSACEGQRAIFVLDKTPFYGEGGGQVGDIG 510

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + I D +K ++GI +    V  GI +    +   ID + R  +  NHS THL
Sbjct: 511 TVTSDNFEIDIIDTKKTSKGIVLMIGDVTAGIAKVGSDVHTEIDVERRNNIRRNHSVTHL 570

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG+HV+Q GS +  D +RFD TH + I+  +LK IE+ VN  I + LPV T 
Sbjct: 571 LHKALKEVLGNHVNQAGSLVRDDYMRFDFTHFEAISQEDLKKIEEIVNKEIFRALPVETI 630

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           I N ++A   GA  L   KY D VRVV +     G  S  LCGGTHV +T EI +  I+ 
Sbjct: 631 ITNPKEAAELGAVGLFEEKYGDIVRVVKM-----GDFSIELCGGTHVKNTSEIGMFKILQ 685

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I +G+RR+E ITG     +L    E++  ++  +K ++  +  ++E    E ++ Q 
Sbjct: 686 EGGISSGVRRVECITGPAVYKYLNENIEQIDRISKLVKANKSEIEHKIETTQNELKEAQK 745

Query: 773 IHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                 K K +  V+++  +  +I     + +    +D   L+ + D ++ K+ S +++ 
Sbjct: 746 EIEIIKKDKAKSEVDNVLDTKFEIDGGFGLVYKFENMDVSTLRDLADTVKDKLGSAVVVF 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                E K + +   + ++  ++NA  + R  AK+  GG GGGRP MA +G  +  K D+
Sbjct: 806 -STVNEGKLNFVAAASNEISKKYNAGSIVREVAKIC-GGSGGGRPTMATAGASDLTKVDE 863

Query: 888 AIAGVASFLKK 898
           A+      L +
Sbjct: 864 ALNFAKKLLTE 874


>gi|306829747|ref|ZP_07462936.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428098|gb|EFM31189.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 494/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y ED++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAKGNVVANVTDVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++AS LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV     K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGYKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|293365697|ref|ZP_06612406.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703642|ref|ZP_07640584.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316065|gb|EFE56509.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623049|gb|EFO02044.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 493/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y ED++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G    + ++S L      ++ G   FKLYDT+G P+++  +I    G
Sbjct: 357 KSEEESFARTLHSGQHFAETIVSDLKAKGQSVIAGSDVFKLYDTYGFPVELTAEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAKGNVVANVTDVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++AS LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV     K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGYKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|297620478|ref|YP_003708615.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375779|gb|ADI37609.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 870

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/907 (38%), Positives = 522/907 (57%), Gaps = 51/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  F+ +F++NGH  +PSS ++P +DPTL+F N+GM  FK+IF G+    Y+  
Sbjct: 1   MNTQEIRRKFINYFRENGHTHVPSSPILPHDDPTLLFINAGMNQFKDIFLGKSVRDYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R GGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW++ T  F+LD
Sbjct: 61  VTSQKCIRVGGKHNDLENVGHTLRHLTFFEMLGNFSFGDYFKKEAIRFAWEVSTTVFELD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++ TV+ ED+EA+++WK+   +  +KI R     NFWSM +TGPCGPCSE+ +D+G 
Sbjct: 121 PERIWPTVFREDDEAYEIWKEY--VPEEKITRFDEKQNFWSMGDTGPCGPCSELLYDRGP 178

Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                  P   E+ ERY+E WNLVFMQ+ +  +     LPK SIDTG GLER+ ++  + 
Sbjct: 179 KYGNAKTPLEDEKEERYMEFWNLVFMQYNRDEEGVMHPLPKPSIDTGSGLERVVSIKMDV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            + YD D+ + LI   E+++G+ Y+G         RVI DH+R  +F IADG+ P+N  R
Sbjct: 239 ESVYDTDVLRALITRVEEISGIGYDGADKEKAPAFRVIADHIRCLAFAIADGVQPSNVDR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+++RRA+ Y R+LG   P +  L+P L   MGS YPEL Q++  I E L +E+E 
Sbjct: 299 GYVLRKVLRRAVRYGRMLGLDRPFLADLVPLLIELMGSDYPELKQSENRIGEILTTEEEN 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           F +TL RG  +L+ ++    K+   + G+ AFKL DT+G PL+ +  I     L  +D  
Sbjct: 359 FIRTLRRGGNILNQIIDEAKKEHRQITGEEAFKLKDTYGFPLEEILLIALDDELE-VDTK 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F +  EE + R+R          +E ++    E + + +F+GY+               
Sbjct: 418 RFIELEEEAKERSRKTRKSTQQLASENLF----EGFASCEFLGYEETE------------ 461

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V AI+     V++  +GQ+  +V D+TPFYAE GGQ+GD G   G
Sbjct: 462 -----------AEGKVAAIIVDNAFVDQLEAGQEGMIVLDRTPFYAEKGGQVGDKGLLTG 510

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +     ++D Q   +GI  H   +ERG +R +  L+  +D + R+ ++ +H+ATHLLH A
Sbjct: 511 ENSLFHVSDCQSPYKGIIAHLGKLERGAIRLKDPLMARVDLERRQSIANHHTATHLLHWA 570

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS + PD LRFD +H K +T  E++ IED VN  I +N+ V +  ++ 
Sbjct: 571 LCKVLGDHVKQAGSVVAPDRLRFDFSHHKGLTQKEIRDIEDLVNAKIRENIAVKSYELSY 630

Query: 657 EDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           E+AI         G KY++ VRV+ +       +S  LCGGTHV   G I L  I  E S
Sbjct: 631 EEAIQREEIKQFFGDKYDNIVRVIDI------DYSKELCGGTHVKQLGSIGLFRIAKEGS 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AG+RRIEA+TG  A      ++  L S+A  LK     ++ R+  + EE ++L     
Sbjct: 685 IAAGVRRIEAVTGSWAEQRSREEENLLLSIADSLKTQPQKLIQRINSLLEENKELAQELK 744

Query: 776 KRK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K   L+  V DL     ++  + F++  ++ + S E++ + D     ++SG+++L   
Sbjct: 745 TLKSAHLKNIVADLINKAEEVQGIRFIAQEVA-LSSDEMRQLADDAVNALESGVVVLAA- 802

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + +  ++  V++D++D+   A DL +  A ++GGGGG G+ H AQ+GG    K  QA+
Sbjct: 803 SLDGRCQLMARVSDDMIDKGIKASDLIKTLAPIIGGGGG-GKAHFAQAGGKTPEKISQAL 861

Query: 890 AGVASFL 896
           + V + L
Sbjct: 862 STVRTLL 868


>gi|257875750|ref|ZP_05655403.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809916|gb|EEV38736.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 880

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/904 (38%), Positives = 513/904 (56%), Gaps = 63/904 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPEWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  + I+ I   DNFW +   GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIGA-GPCGPDSEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                      E     E ERY+EIWNLVF +F  Q       LP  +IDTGMGLERM +
Sbjct: 178 PEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q    N++ DLF  +I A   ++G    G+     ++ +VI DH+R+ SF I DG LP
Sbjct: 238 IVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V++ +  D  + L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 NEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F Q ++ QR+RARA      S   +     L +    ++F+GYD L       
Sbjct: 418 K-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE------ 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +S +  I+Q   + +   +G+  +++F +TPFYAE GGQ+ D
Sbjct: 469 -----------------ANSELLVIIQDEALHDSVSTGE-AKLIFAETPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG  + +   +  ++TDV+K   G F+H A + +  L+  ++  L +D   R ++  NH+
Sbjct: 511 TGTIVAEDGTIVAEVTDVKKAPNGQFLHTATI-KAPLKEGVNYFLQVDQHRRNKIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E  VN  I + LP
Sbjct: 570 ATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWEALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I + 
Sbjct: 630 VVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGTHVANTEDIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K +Q   VV + E++  + 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEVVAKTEQLQAQL 744

Query: 768 RKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           R+LQ  +     KL           + +VN +  I ++V   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQKDHS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L   + + K ++L  + +   ++   A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-TANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKA 885
               
Sbjct: 863 PEGI 866


>gi|309791340|ref|ZP_07685863.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308226650|gb|EFO80355.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 895

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/918 (38%), Positives = 523/918 (56%), Gaps = 56/918 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR T+L+FF+++GH ++PS+SL+  +DPTL+F NSGMVPFK++F G E+  Y   TT
Sbjct: 8   AAQIRETYLKFFERHGHTIVPSTSLVVADDPTLLFVNSGMVPFKDVFLGLEQRPYSRATT 67

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R  GKHNDL+ VG + RH TFFEMLGNFSFG YFK  AI +AW LL +EF L   
Sbjct: 68  AQKCLRVSGKHNDLEEVGPSPRHQTFFEMLGNFSFGDYFKADAIAMAWKLLVEEFKLPVE 127

Query: 124 RLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           RL+ TV+        DEEA +LW    G    +++R    DNFW M +TGPCGPCSEI  
Sbjct: 128 RLWFTVFAGDDEVPADEEAAQLWIA-QGADPARVLRFGRKDNFWVMGDTGPCGPCSEITM 186

Query: 178 DQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
             G+ +      G + +   Y+EIWN VFMQ+E+        LP+ S+DTGMGLERM  V
Sbjct: 187 YIGDDLAKMSAAGVNSDDPDYVEIWNNVFMQYER---STMRPLPRQSVDTGMGLERMTMV 243

Query: 237 LQEKTNNYDIDLFKHLIQAS--EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q   +NYD DLF  +I     E  +   +   N+  +R I DH R+ +FLIADG+LP N
Sbjct: 244 MQGVHSNYDTDLFVPIINRIITELGSDEAHYRANLAPYRAIADHSRAIAFLIADGVLPGN 303

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
            GR YVLRRI+RRA    R +G+T P +  ++  +  EM  AYP+L +    I E+  +E
Sbjct: 304 NGRSYVLRRILRRAAYQGRSIGFTRPFLAEVISTVIGEMAPAYPQLAERHAFILESANAE 363

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F +TL  G+  L  ++  +       + G+ AF L DT+G PLD+ Q I    GL  
Sbjct: 364 EQQFLRTLSGGISRLSTIIEQVQSSGGNAVPGNDAFVLKDTYGFPLDLTQRIAGEAGLT- 422

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   +  A+ EQR R+RA +     G   +IW    +   +T+F+GY            
Sbjct: 423 VDEAGYTAAMNEQRERSRAAAQ-FKRGADAEIWAD--KGLPSTEFLGY------------ 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           S  + A+V  G+ V  A +G  VE+V D+TPFYAE+GGQ+GD+G
Sbjct: 468 -----------TQVAASGQILALVANGDDVSSATTGSPVEIVLDRTPFYAESGGQVGDSG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G    +++ D  + A G+ VH+ +VE G +    ++   +    R  +  NH+ATH+
Sbjct: 517 RLVGPHGTVRVDDTLRPAPGLIVHYGVVESGQVTVGEAVQAEVAVTRRADIERNHTATHM 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G H +Q GS + PD LRFD TH++ + +A+L+ IE  +N  +  +  V  +
Sbjct: 577 LQRALRDVVGEHAAQAGSLVAPDRLRFDFTHNRALDTAQLREIESRLNAWVRADGAVAWQ 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIM 706
           +M+ + A+ +GA AL G KY D+VR+V++E       E     S  LCGGTHV  TGEI 
Sbjct: 637 VMDYQAALDAGAIALFGEKYGDQVRMVTIERNGTTSMEFASRDSRELCGGTHVKRTGEIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + +V ESSI +GIRRIEA+TG+ A      Q E L+ LA  L VS   V  RVE++  E
Sbjct: 697 YVRLVGESSIGSGIRRIEALTGRGAEVWAEQQAEVLRDLAGRLGVSVAQVSERVEQLVSE 756

Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+ Q      + ++    +       ++   V  ++  +   D+  L+ + D L+ K+ 
Sbjct: 757 NRQRQQELDALRGKMARASIESLLDTVNRDGAVPVLAAQVEAEDANRLREMGDWLRDKLG 816

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           SG+I+L  +  E K  +L +VT DL+   ++A +L +  A+++GGGGG GRP MAQ+GG 
Sbjct: 817 SGVIVLGTVIAE-KPQILTMVTPDLVKAGYHAGNLVKALAQIVGGGGG-GRPEMAQAGGR 874

Query: 881 NGNKADQAIAGVASFLKK 898
           +  K  + IA     + +
Sbjct: 875 DVRKLAEVIARAPELVAE 892


>gi|253583470|ref|ZP_04860668.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834042|gb|EES62605.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 866

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/909 (37%), Positives = 518/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++V+  D+EA ++W +      ++++R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   LI+ + ++T  +Y  +     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLIEEAAKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG++E  +  ++  + + M +AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGHSELFLYKMVDKVVSMMENAYPDLRSNVEHIKKVVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F +TLD+G+ L++  +  L    I  L+G+V FKLYDT+G P ++ ++I   +G+  I
Sbjct: 356 EKFSRTLDQGMQLVNQEIEKLKAANITKLDGEVTFKLYDTYGFPYELTEEICQEKGIE-I 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   + EQ+ +ARA    +     +       ++YGAT+F GY  L+ +  +   R
Sbjct: 415 SKEEFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDRYGATEFSGYTTLKDTGKLLSSR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                K                                 ++FD TPFY E+GGQ  D G 
Sbjct: 475 DGKDNKK-------------------------------LMIFDVTPFYGESGGQAADIGM 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G   ++ DVQK+ +GIF+H   V +G         L ID  NR   + NH+ATHLL
Sbjct: 504 ITGNGFEGKVIDVQKQ-KGIFIHTVEVLKGTPIEGEEYFLEIDEANRMATAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  + LRFD  H + +T+ EL+ +E+ VN+ IA+ + V    
Sbjct: 563 HEALREVLGSHVQQAGSFVNGERLRFDFNHYEAMTAEELEKVEELVNEKIAEAIDVKIAN 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  +GA AL G KY D VRVVSVE       S  LCGGTH+ + G+I L  I SE
Sbjct: 623 MSMDEAKKAGATALFGDKYGDVVRVVSVEG-----FSIELCGGTHIDNIGKIGLFKIESE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AGIRRIEA+TG+ A   +   +  LK++   +K  + N++ RVE++ E  ++    
Sbjct: 678 AGIAAGIRRIEAVTGKGAYKVVKDTEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKE 737

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K     ++      +   I  V  +        + +L+ ++D ++ K+ + +++L 
Sbjct: 738 LEELKSRFTQIEAQALAENSEIINGVTVIMKTFKTRTADDLRKMIDYVKDKMTNTVVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +   KA     VT++L  +  A +L + +A V+ GG GGGRP  AQ+GG +  K  +A
Sbjct: 798 SST--DKAIFAAGVTKELTSKVKAGNLVKEAA-VITGGNGGGRPDFAQAGGKDVTKIQEA 854

Query: 889 IAGVASFLK 897
           +  V   LK
Sbjct: 855 MDSVKETLK 863


>gi|257884661|ref|ZP_05664314.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257820499|gb|EEV47647.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 880

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/917 (37%), Positives = 509/917 (55%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LYITVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYITVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+   N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I D  LP
Sbjct: 238 IVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDDALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L    +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-NEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKADQAIAGVASFLKK 898
                 A+     ++ +
Sbjct: 863 PAGIPDALKAAKEWVAQ 879


>gi|15903283|ref|NP_358833.1| alanyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116515613|ref|YP_816683.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|32171540|sp|Q8DPC7|SYA_STRR6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|122278431|sp|Q04JW5|SYA_STRP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15458878|gb|AAL00044.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|116076189|gb|ABJ53909.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 872

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVDNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QPKIQELLDAVAGKL 872


>gi|322387551|ref|ZP_08061160.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321141418|gb|EFX36914.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 872

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 497/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D +++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDTDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFLPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVTEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       LTID   R ++  NH
Sbjct: 509 DHGQILDAAGNVVATVTDVQKAPNGQPLHTVEVL-APLALNQEYTLTIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A++G+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVSGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + + N   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNLLVASKTKD----IHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|150390222|ref|YP_001320271.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149950084|gb|ABR48612.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 893

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 528/908 (58%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  FL+F+++  H +  S  L+P ND +L+  N+GM P KN F+G E P  + +
Sbjct: 17  MGLNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRM 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG+T+RH TFFEMLG+F+FG YFK  +IQ  W+  TK  ++ 
Sbjct: 77  ATCQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMP 132

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +++ +VY+ED+EA+ +W+    +  ++I+R+   DNFW +   GPCGPCSE++FD+G+
Sbjct: 133 EDKIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIGV-GPCGPCSELYFDRGD 191

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +R++E WN VF QF++       +LP  +IDTGMGLER+A ++Q+
Sbjct: 192 KYSCGHDDCKPGCDCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVACIMQD 251

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  KH++ +    T  +Y  +    ++ R+I DHLRS +F+I DGILP+NEGR
Sbjct: 252 VDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPSNEGR 311

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG ++  +  L+  +    G AY EL++ K  I++ ++ E++R
Sbjct: 312 GYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQVEEDR 371

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+ +GL +L+  +  +    + +LNG  AFKLYDT+G PLD+ ++IL  R +  +D 
Sbjct: 372 FQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT-VDE 430

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR+RAR    G  +   ++  F   +K   T F GY+ LR           
Sbjct: 431 SEFESEMEKQRNRARKARSGGDTEGWKEDAFDALDKNIQTSFKGYETLR----------- 479

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V AI+++ + V    +G++V +V D+TPFY E+GGQ+GD G   
Sbjct: 480 ------------AEGKVLAIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGDIGHIF 527

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    Q+ D ++        +  + RGIL+   S+   +D + R     NH+ATHLLH 
Sbjct: 528 KDEFEGQVLDTKQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTATHLLHK 587

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G HV Q GS +TP+ LRFD +H + ++SA+L  +E  VN  I   L V T   +
Sbjct: 588 ALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNVDTVEAS 647

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL G KY D VRVV       G +S  LCGGTHV ++ EI    I+SE+ 
Sbjct: 648 LEEAKKMGAMALFGEKYGDDVRVVK-----TGDYSVELCGGTHVKNSSEIGTFLILSETG 702

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TGQ A  H+  +   ++ + S LK     +  RVEE+ +E ++      
Sbjct: 703 VAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKEKDKELQ 762

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L  + +         I   N + H   E   ++L+++ D+L++KI SG+I L   
Sbjct: 763 QLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGVIALGAE 822

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + KAS  +  T+D++++  ++ ++ R  AK+ GGGGG GRP MAQ+GG N  K   A+
Sbjct: 823 SND-KASFFVTATKDVVEKGVHSGNMIREVAKIAGGGGG-GRPDMAQAGGKNPEKIQSAL 880

Query: 890 AGVASFLK 897
           + V   LK
Sbjct: 881 SIVKGLLK 888


>gi|317133026|ref|YP_004092340.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471005|gb|ADU27609.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 874

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/905 (38%), Positives = 520/905 (57%), Gaps = 47/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  LPS  L+P  D +L+  NSGM P K  F GQ  P  + V
Sbjct: 4   TGLNELREKYLAFFESKGHLRLPSFPLVPQGDNSLLLINSGMAPMKKYFLGQVTPPSKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR      D+++VG+ +RH T+FEMLGNFSFG YFK  A    W+ +TK   L 
Sbjct: 64  TTCQKCVRT----PDIEHVGKDDRHGTYFEMLGNFSFGDYFKHEACAWGWEFVTKVVKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++Y+T+Y +D+EAF +W K  G+    I+R+   DNFW     GPCGPCSEI+FD+GE
Sbjct: 120 EDKVYVTIYLDDDEAFDIWTKEVGVDPSHIVRLGKEDNFWEHGS-GPCGPCSEIYFDRGE 178

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WN+VF Q++   K     + K +IDTGMGLER+A V+Q+
Sbjct: 179 EHGCGKPTCGVGCDCDRYVEFWNIVFSQYDSDGKGTYTPMAKPNIDTGMGLERLACVMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  +++++ + ++ G+ Y  +    ++ RVI DH+RS+ FL+ DG+LP+NEGR
Sbjct: 239 VNNLFEVDTVQNIMKHTGRIAGVTYGEDAKADISLRVITDHIRSTVFLVGDGVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG  EP +  +   +  E  +AYP+L++ +  I+  +++E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGIREPFLYQVAETVVHENAAAYPDLVEKQSYIQSVIKAEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  T+D+GL LL+  ++ L    +L+GD AFKLYDT G PLD+  DIL  RG + +D   
Sbjct: 359 FAATIDQGLQLLEQRIAALPAGGVLSGDDAFKLYDTFGFPLDLTSDILEERGFS-VDADG 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++EQR+RARA          E    S  E    T+F+GY+ L              
Sbjct: 418 FEKRMKEQRARARAARAAGMGAAWED---SKDEDTPETRFVGYEKL-------------- 460

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V AI+ +GE V  A  G  V VV D TPFYAE+GGQ+GDTG     
Sbjct: 461 ---------SCAAKVAAIITEGERVGLADQGSTVSVVLDTTPFYAESGGQVGDTGLLTAA 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ +Q+TD +K   G F+H   V  G L    ++   +D   RR +  NHSA HLL  AL
Sbjct: 512 GVCVQVTDCRKSPTGRFLHIGKVVEGSLSAGETMQAQVDAPRRRAVMRNHSAAHLLQAAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            ++LG+HV Q G  +    +RFD TH   +T+ EL ++E  VN  I   LPVVTR M  E
Sbjct: 572 RSVLGTHVQQAGQLVNDRHVRFDFTHFAALTADELAAVEKEVNTAILSALPVVTRTMAVE 631

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL   KY D VRVV +     G  S  LCGGTHV +TG+I L  IVSE+S+ 
Sbjct: 632 EAKKTGAMALFSEKYGDVVRVVQM-----GDVSKELCGGTHVDNTGKIGLFRIVSETSVS 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG      L GQD  +K  A  LK +   +  R  ++  E R+   +    
Sbjct: 687 AGVRRIEAVTGTNVLELLRGQDIAIKEAAQVLKAAPAELPQRAAQVAGELREKDRVIETL 746

Query: 778 K-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +     +Q++    +  ++     ++  + E+D   L+ + D +++     +I+L G++ 
Sbjct: 747 RGRIAAMQMDALLAAAKEVGVFRLITASLKEMDVDGLRMITDRVRESDPQAVIVLAGMAG 806

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K         E + +  +A +L R +AK+ GGGGG GRP  A +GG + ++  +A+  V
Sbjct: 807 GKVVFAAACGKEAVKNGAHAGNLLRTAAKITGGGGG-GRPDSATAGGRDASRVAEALQSV 865

Query: 893 ASFLK 897
            + L+
Sbjct: 866 EAGLE 870


>gi|168491286|ref|ZP_02715429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183574430|gb|EDT94958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
          Length = 872

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|288574979|ref|ZP_06393336.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570720|gb|EFC92277.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 878

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 514/906 (56%), Gaps = 45/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  F++F+   G +   S SL+P  DPTL+FT +GMVPFK  + G  +P   + 
Sbjct: 4   KSGKEIRRLFVDFWVSKGAKHYDSFSLVP-EDPTLLFTIAGMVPFKKYYLGIAEPDVDSA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR     ND+DNVGRT RHHTFFEMLGNFS+GGYFK+ +I   W+ LT+   LD
Sbjct: 63  VTSQKCVRT----NDIDNVGRTARHHTFFEMLGNFSWGGYFKKESITWGWEFLTEVIGLD 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+Y T+Y +DEEAF +W K  GL   +I+R   ++NFW M   GPCGP SEI +DQG 
Sbjct: 119 PDRMYATIYKDDEEAFDVWNKDVGLPDSRILRFGEDENFWFMGPQGPCGPDSEILYDQGP 178

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G       E +RY+EIWN VF Q+++Q       LP+ +IDTGMGLER+ +++Q  
Sbjct: 179 AFSCGPDCKPGCECDRYLEIWNHVFTQYDRQEDGSLLPLPRKNIDTGMGLERLTSLVQGV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +N+++ DLF+ ++     + G+ Y       +  +VI DH+R+ SF+IADGILP+N+G+G
Sbjct: 239 SNDFETDLFRPIMDHVCDMAGIGYGDGLQGDMAAKVISDHIRAVSFMIADGILPSNDGQG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  Y RL+G  +  +  L+P +   M   Y EL+  +L IE+ +  E++RF
Sbjct: 299 YVLRRLLRRAARYGRLIGLKKAFLTDLIPNVMDIMADPYRELLDNRLTIEQVVAVEEKRF 358

Query: 359 GKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G+TL++G  LL   +S    G   IL GDVAF+LYDT+G PL++ ++I   +GL+ +D  
Sbjct: 359 GRTLEQGSDLLHQEISSVFAGDGSILPGDVAFELYDTYGYPLELTREICEEKGLS-VDED 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + +E QR RAR+ S    S  T  ++  L  ++G T F+GYD L             
Sbjct: 418 GFRREMEVQRERARSSSKQANSVMTGDLYAELLSEHGPTPFLGYDSLE------------ 465

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      + + +  ++++G++V+ A +G  VE +  +TPFYAE GGQ+GD G   G
Sbjct: 466 -----------LEADLTVLMKEGKVVDSASTGDSVEFLLSRTPFYAERGGQVGDQGFVKG 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG  +++ D    A  + VH  IV  G +++   +   +D   R  ++ NH+ATHLLH +
Sbjct: 515 DGFIVEVEDTIHPAGDLIVHRGIVTSGTVKSGCEVRAMVDKDRREAITKNHTATHLLHES 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV QNGS ++   LRFD TH +P++S EL  +E  VN  I  N  +     + 
Sbjct: 575 LIRVLGGHVRQNGSLVSDRFLRFDYTHFEPLSSGELDEVELMVNQEIQNNKTIKVDETDL 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             A   GA AL   KY D+VRVVS+        SS LCGG HV +TGEI L  I+++ SI
Sbjct: 635 ATAKNLGAKALFEEKYGDKVRVVSI-----SEFSSELCGGVHVCATGEIGLFKIINDESI 689

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRRI A+TG  A  +       LK L+S L V    ++ +++ + EE R+LQ    +
Sbjct: 690 GSGIRRITAMTGMNAFRNYQNITGTLKELSSNLGVRPARLIEKIKSMDEENRELQKKLQR 749

Query: 777 RKLQLNVEDLSCHKIA-----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
             ++  ++DL    +       V+     I  V   +L+ V D+++ K    + +L+   
Sbjct: 750 YTIRSAMDDLRESVVKTDIGQGVSLYVASIEGVTPDQLREVGDSIKDKDTGSVTLLMSSD 809

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            ++   V +V  + +    +   + +  A  L GG GGGRP MAQ+GGP  +     +  
Sbjct: 810 GDRTQMVCMVGGDAVEKGLHGGKIVKEVAA-LFGGKGGGRPTMAQAGGPKIDDMKDILDK 868

Query: 892 VASFLK 897
             + +K
Sbjct: 869 AVAIVK 874


>gi|317056551|ref|YP_004105018.1| alanyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315448820|gb|ADU22384.1| alanyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 885

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/906 (33%), Positives = 468/906 (51%), Gaps = 42/906 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++++ +R ++L+FF+  G     S  L+P ND +L+   +GM P K  FTGQE P    +
Sbjct: 4   TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T RH T+FEMLGNFSFG YFK+ AI  AW+ +T    L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+++VY++D+EA K+W +  G+  D I+R+   DNFW     GPCGPCSEI+FD+GE
Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+E WNLVF QFE+        L + +IDTGMGLER+A ++Q 
Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +D+D  K +     ++ G +Y       V+ RVI DH+R+ +FL +DG+LP+NEGR
Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGAEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + +LLG     +  L+  +       Y EL +    I + L +E++ 
Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  T+DRG+ +LD  +  L       L+G+  FKL DT+G PLD+ ++IL  +GL+  D 
Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLSA-DE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   +E+QR  AR      G    E+  F   +K  +T+F GYD              
Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYDKTED---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        + ++  +    +++E A     V +V DQT FYAE+GGQ GDTG   
Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQTGDTGIVE 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  + D QK   G F     V  G L     +   +D   R     NHS  HLL  
Sbjct: 516 TATGKADVLDTQKAVGGKFALKVKVTEGALTVGQQVTFKVDKAKRLATMRNHSCAHLLQA 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL ++LG HV Q G  +    LRFD +H + +T+ E   +E  VN  I   L +    M 
Sbjct: 576 ALRSVLGDHVHQAGQLVDSQRLRFDFSHFEAMTNEEKAKVEALVNKYIFDALDITMEEMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             +A   GA AL G KY + VRVV++  +     S   CGGTH+++T +I L  I+SE+S
Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMGDK-SDAASIEFCGGTHLNNTSKIGLFKIISENS 694

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIH 774
           + +G+RRIEA+TG      L    + +   +  LK  +   +V R   +  E + L+   
Sbjct: 695 VASGVRRIEAVTGTGVLELLNSNIDTINKASETLKLNNPAELVARCGAVMHEIKGLEKER 754

Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              +     ++      +   +  V+  +  ++ +    L+ + D L+    + ++++  
Sbjct: 755 DSLETSMANMRAKSVLENAVDVNGVSVATAQLTNIKPDVLRKMADELKAANDNVLVIMTT 814

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           ++ EK   V     E +    +A  +A   A  L  G GGGRP  A +G  +      A+
Sbjct: 815 VNGEKGNIVAAAGKEAVAKGAHAGKIAGKIAA-LTNGKGGGRPDSAMAGVGDVTLIGAAL 873

Query: 890 AGVASF 895
              A  
Sbjct: 874 EKAAEV 879


>gi|257866118|ref|ZP_05645771.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872448|ref|ZP_05652101.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257800052|gb|EEV29104.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806612|gb|EEV35434.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 880

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/904 (38%), Positives = 513/904 (56%), Gaps = 63/904 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPEWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  + I+ I   DNFW +   GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIGA-GPCGPDSEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                      E     E ERY+EIWNLVF +F  Q       LP  +IDTGMGLERM +
Sbjct: 178 PEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q    N++ DLF  +I A   ++G    G+     ++ +VI DH+R+ SF I DG LP
Sbjct: 238 IVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V++ +  D  + L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 NEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F Q ++ QR+RARA      S   +     L +    ++F+GYD L       
Sbjct: 418 K-VDHQGFEQEMDAQRARARAARQTELSMGVQSAL--LTDIKVDSRFVGYDSLE------ 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +S +  I+Q   + +   +G+  +++F +TPFYAE GGQ+ D
Sbjct: 469 -----------------ANSELLVIIQDEALHDSVSTGE-AKMIFAETPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG  + +   +  ++TDV+K   G F+H A + +  L+  ++  L +D   R ++  NH+
Sbjct: 511 TGTIVAEDGTIVAEVTDVKKAPNGQFLHTATI-KAPLKEGVNYFLQVDQHRRNKIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +TS EL  +E  VN  I + LP
Sbjct: 570 ATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQIVNQKIWEALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I + 
Sbjct: 630 VVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGTHVANTEDIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T Q A + L  ++ +LK++A  +K +Q   VV + E++  + 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEVVAKTEQLQAQL 744

Query: 768 RKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           R+LQ  +     KL           + +VN +  I ++V   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQLADQWKQKDHS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L   + + K ++L  + +   ++   A DL +  A  +GGGGG GRP MAQ+GG N
Sbjct: 805 DILVLA-TANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVGGGGG-GRPDMAQAGGKN 862

Query: 882 GNKA 885
               
Sbjct: 863 PEGI 866


>gi|205830053|sp|A6TQZ4|SYA_ALKMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 528/908 (58%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  FL+F+++  H +  S  L+P ND +L+  N+GM P KN F+G E P  + +
Sbjct: 4   MGLNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRM 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG+T+RH TFFEMLG+F+FG YFK  +IQ  W+  TK  ++ 
Sbjct: 64  ATCQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +++ +VY+ED+EA+ +W+    +  ++I+R+   DNFW +   GPCGPCSE++FD+G+
Sbjct: 120 EDKIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIGV-GPCGPCSELYFDRGD 178

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + +R++E WN VF QF++       +LP  +IDTGMGLER+A ++Q+
Sbjct: 179 KYSCGHDDCKPGCDCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVACIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  KH++ +    T  +Y  +    ++ R+I DHLRS +F+I DGILP+NEGR
Sbjct: 239 VDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG ++  +  L+  +    G AY EL++ K  I++ ++ E++R
Sbjct: 299 GYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQVEEDR 358

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+ +GL +L+  +  +    + +LNG  AFKLYDT+G PLD+ ++IL  R +  +D 
Sbjct: 359 FQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR+RAR    G  +   ++  F   +K   T F GY+ LR           
Sbjct: 418 SEFESEMEKQRNRARKARSGGDTEGWKEDAFDALDKNIQTSFKGYETLR----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V AI+++ + V    +G++V +V D+TPFY E+GGQ+GD G   
Sbjct: 467 ------------AEGKVLAIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGDIGHIF 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    Q+ D ++        +  + RGIL+   S+   +D + R     NH+ATHLLH 
Sbjct: 515 KDEFEGQVLDTKQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTATHLLHK 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  I+G HV Q GS +TP+ LRFD +H + ++SA+L  +E  VN  I   L V T   +
Sbjct: 575 ALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNVDTVEAS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL G KY D VRVV       G +S  LCGGTHV ++ EI    I+SE+ 
Sbjct: 635 LEEAKKMGAMALFGEKYGDDVRVVK-----TGDYSVELCGGTHVKNSSEIGTFLILSETG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TGQ A  H+  +   ++ + S LK     +  RVEE+ +E ++      
Sbjct: 690 VAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKEKDKELQ 749

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L  + +         I   N + H   E   ++L+++ D+L++KI SG+I L   
Sbjct: 750 QLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGVIALGAE 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           S + KAS  +  T+D++++  ++ ++ R  AK+ GGGGG GRP MAQ+GG N  K   A+
Sbjct: 810 SND-KASFFVTATKDVVEKGVHSGNMIREVAKIAGGGGG-GRPDMAQAGGKNPEKIQSAL 867

Query: 890 AGVASFLK 897
           + V   LK
Sbjct: 868 SIVKGLLK 875


>gi|315160222|gb|EFU04239.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0645]
          Length = 880

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTYD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + D+N + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPEGIADALAEVENWL 877


>gi|163790359|ref|ZP_02184791.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159874430|gb|EDP68502.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 882

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/917 (38%), Positives = 521/917 (56%), Gaps = 62/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF+  GH++ PS+SL+P  DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT  K   L
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEEKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY ED +A  +WK+  GL+ D II     DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPEKLYVTVYPEDTDAKMIWKEKIGLTDDHII--DVADNFWDIGA-GPSGPDSEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ER++EIWNLVF +F  +       LP  +IDTGMGLER+ +
Sbjct: 178 EAFNDLAENDPENYPGGENERWLEIWNLVFSEFNHKRDGTYEPLPNKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I+  + ++G+K  G    + ++ +VI DH+R+ SF I DG LP
Sbjct: 238 ILQDAPTNFETDLFMPIIEKVQALSGIKKYGENATDDISFKVIADHVRAVSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  M  L+P +   M S YPE+++ +  I + ++
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDKAFMFKLVPVVGNIMNSHYPEILEQEEFIVKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+  +S L    ++ + G   FKLYDT+G P+++ ++     G 
Sbjct: 358 NEEERFHETINDGLTILNERISELKVNGEKTIAGSDIFKLYDTYGFPVELTEEFAQDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   +  QR RARA   G  S   +   F+       + F+GY+         
Sbjct: 418 E-VDHEGFEIEMTAQRDRARAARSGEKSMGIQTKLFAGLND--ESLFVGYNKT------- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                               I+  I     +V  A +G++V ++FDQTPFYAE GGQ+ D
Sbjct: 468 ----------------TAMGILAVIATDEALVTTAKTGEQVRLIFDQTPFYAEMGGQIAD 511

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G       ++  ++TDV+K   G  +H   V    L    +  L +D   R +++ NH+
Sbjct: 512 KGIIKDTTGKIVAKVTDVKKAPAGQPLHTVEVLES-LTVGETYKLEVDETLRNKITRNHT 570

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  ILG H +Q GS +T + LRFD TH   IT  EL  +E  VN+ I ++LP
Sbjct: 571 ATHLLHQALKDILGEHANQAGSLVTQNHLRFDFTHFGQITQKELNEMEQIVNEKIWESLP 630

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT       A   GA AL G KY D VRVV+V     G +S  LCGG HVS+T EI + 
Sbjct: 631 VVTVETEIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEIGIF 685

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I+SES I AG+RRIEA+T + A + L  + ++L ++A  +K  Q  +VV +V+++  E 
Sbjct: 686 KIISESGIGAGVRRIEAVTSEAAYNLLQTEQKRLNAVADLVKAQQTQDVVTKVQQLQTEL 745

Query: 768 RKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822
           ++LQ  +   + KL  +        + +VN ++ + +EV   D  +L+ + D  ++K  S
Sbjct: 746 KELQKENESLQAKLASDQAGDIFKNVQEVNGITVVSAEVDVNDMNQLRQLADQWKQKAVS 805

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            ++ L G SK+ K ++L  V +  + + F A DL +  A ++GGGGG GRP MAQ+GG N
Sbjct: 806 NVLTL-GFSKDGKVNLLTAVDDATIKKGFKAGDLIKTIAPLVGGGGG-GRPDMAQAGGKN 863

Query: 882 GNKADQAIAGVASFLKK 898
                 A+A V  ++ +
Sbjct: 864 PAGLQDALAKVTEWVNE 880


>gi|148985664|ref|ZP_01818818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147922145|gb|EDK73267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800251|emb|CBW32870.1| alanyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 872

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESAFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELALII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|306824980|ref|ZP_07458323.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432807|gb|EFM35780.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 872

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 494/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAETIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAAGNLVATVTDVQKAPNGQALHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK +A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKVVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +            + + N   +I S+V   D+  L++  D  ++K  
Sbjct: 743 VRHLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|15901237|ref|NP_345841.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111658578|ref|ZP_01409235.1| hypothetical protein SpneT_02000253 [Streptococcus pneumoniae
           TIGR4]
 gi|20532258|sp|Q97Q48|SYA_STRPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14972870|gb|AAK75481.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
          Length = 872

 Score =  855 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVDNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QPKIQELLDAVAGKL 872


>gi|148989504|ref|ZP_01820863.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|149007347|ref|ZP_01831005.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147761151|gb|EDK68119.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147925047|gb|EDK76128.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|332074706|gb|EGI85180.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
          Length = 872

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|257085361|ref|ZP_05579722.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257086856|ref|ZP_05581217.1| alanyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|257089773|ref|ZP_05584134.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257415989|ref|ZP_05592983.1| alanyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|307288125|ref|ZP_07568135.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|312900645|ref|ZP_07759942.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|312904123|ref|ZP_07763291.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|256993391|gb|EEU80693.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|256994886|gb|EEU82188.1| alanyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256998585|gb|EEU85105.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|257157817|gb|EEU87777.1| alanyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|306500861|gb|EFM70179.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|310632599|gb|EFQ15882.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|311292126|gb|EFQ70682.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|315027379|gb|EFT39311.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2137]
 gi|315147876|gb|EFT91892.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4244]
 gi|315164259|gb|EFU08276.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315166647|gb|EFU10664.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1341]
 gi|315578468|gb|EFU90659.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 880

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + DVN + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|168484561|ref|ZP_02709513.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|172042221|gb|EDT50267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
          Length = 872

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGEL 872


>gi|257082652|ref|ZP_05577013.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256990682|gb|EEU77984.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol]
          Length = 880

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/917 (38%), Positives = 519/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D+G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADSGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + D+N + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|315150647|gb|EFT94663.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0012]
          Length = 880

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINETFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + DVN + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|307127048|ref|YP_003879079.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|306484110|gb|ADM90979.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
          Length = 872

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|256853016|ref|ZP_05558386.1| alanyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|307291365|ref|ZP_07571249.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|256711475|gb|EEU26513.1| alanyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|306497596|gb|EFM67129.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030000|gb|EFT41932.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4000]
          Length = 880

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGDVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + DVN + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|29375946|ref|NP_815100.1| alanyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227518645|ref|ZP_03948694.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227553175|ref|ZP_03983224.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229550130|ref|ZP_04438855.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255972907|ref|ZP_05423493.1| alanyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255975962|ref|ZP_05426548.1| alanyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256762386|ref|ZP_05502966.1| alanyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958870|ref|ZP_05563041.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256965234|ref|ZP_05569405.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257419191|ref|ZP_05596185.1| alanyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257422731|ref|ZP_05599721.1| alanyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|307271131|ref|ZP_07552414.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307273337|ref|ZP_07554582.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|307277483|ref|ZP_07558575.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|307279186|ref|ZP_07560244.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|312952383|ref|ZP_07771258.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|41018198|sp|Q835J8|SYA_ENTFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29343408|gb|AAO81170.1| alanyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|227073902|gb|EEI11865.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|227177701|gb|EEI58673.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229304716|gb|EEN70712.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|255963925|gb|EET96401.1| alanyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|255968834|gb|EET99456.1| alanyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256683637|gb|EEU23332.1| alanyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256949366|gb|EEU65998.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256955730|gb|EEU72362.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|257161019|gb|EEU90979.1| alanyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257164555|gb|EEU94515.1| alanyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|306504311|gb|EFM73523.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|306505748|gb|EFM74926.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306509864|gb|EFM78889.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306512629|gb|EFM81278.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|310629767|gb|EFQ13050.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315033782|gb|EFT45714.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0017]
 gi|315036867|gb|EFT48799.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0027]
 gi|315153346|gb|EFT97362.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0031]
 gi|315155877|gb|EFT99893.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315157956|gb|EFU01973.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0312]
 gi|315170069|gb|EFU14086.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1342]
 gi|315575565|gb|EFU87756.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315579993|gb|EFU92184.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309A]
 gi|323480614|gb|ADX80053.1| alanyl-tRNA synthetase [Enterococcus faecalis 62]
 gi|327535020|gb|AEA93854.1| alanine--tRNA ligase [Enterococcus faecalis OG1RF]
 gi|329571430|gb|EGG53117.1| alanine--tRNA ligase [Enterococcus faecalis TX1467]
          Length = 880

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + D+N + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|300860344|ref|ZP_07106431.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|300849383|gb|EFK77133.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|315145691|gb|EFT89707.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2141]
          Length = 880

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + D+N + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPEGIADALAEVENWL 877


>gi|149019336|ref|ZP_01834698.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|225854830|ref|YP_002736342.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|147931206|gb|EDK82185.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|225722331|gb|ACO18184.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 872

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 501/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPCIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|308233742|ref|ZP_07664479.1| alanyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|328943732|ref|ZP_08241197.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327491701|gb|EGF23475.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 882

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/905 (37%), Positives = 507/905 (56%), Gaps = 44/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  G +   SSSLIP  DP+L+  N+GM  FK  + G +       
Sbjct: 9   MTTAEIREDFLSFFESKGCKRYESSSLIP-EDPSLLLANAGMNQFKEYYQGTKTMREIGA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
           T+ QKC+R     ND++N+G   RH +FFEMLGNFSFGGY K +AI  AW+ +T      
Sbjct: 68  TSCQKCLRT----NDIENIG-DARHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPAHLG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY+TV+ +D+EA +LW++  G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 123 LPKDRLYVTVFTDDDEACELWQQ-QGVALDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 181

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  PG  ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLERMA ++Q 
Sbjct: 182 GPSFEGEKPG--DDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERMAAIMQH 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +NY+ D+ + LI   E+++   Y  +     + R++ DH R+ +F+I DGILP NEGR
Sbjct: 240 EGSNYEGDVLRSLIGVGEELSHKTYHSSERVDTSLRILADHARAVTFMIGDGILPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + RL+G     +      +   M   YP+L+Q K LIE  + +E++R
Sbjct: 300 GYVLRRLLRRAIYHGRLMGIEGSFLTKYSAEVMRLMAQVYPQLLQNKALIEGIISAEEQR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TLD G   L   L+HL    +L G+VAFKL+DT+G P+D+ ++I    G   +D+ +
Sbjct: 360 FTATLDAGEQALKDELAHLDAGSVLPGEVAFKLHDTYGFPIDLTREIALGLG-HDVDMDT 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +E+QRSRARA +     GT+  +W  L + +  T F+GYD                
Sbjct: 419 FEKLMEDQRSRARAQATRDAWGTSNSVWAKLSDSHEMTTFVGYDHNTLDG---------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+V  G  V++  +  +VEVV D TPFY E GGQ+GDTG    +
Sbjct: 469 ------------AHVVALVVDGASVDKVQANTRVEVVLDATPFYGERGGQVGDTGYLSNE 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            ++L++ +   +   +  H  ++E+G L    +L   ID   R  +  NH+ATHLL  AL
Sbjct: 517 SVKLRVENTLHREGELLSHECVLEQGTLAVGDTLNCAIDVHRRECIRRNHTATHLLDAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS + PD LRFD TH + +T A++  +E  VND I    P+VTRIM+RE
Sbjct: 577 IKVLGDHVSQAGSLVAPDRLRFDFTHFEALTPAQIAQVEQLVNDEIFAAEPMVTRIMSRE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  SGA  L    Y D VRVVS    D   +S  LCGGTH  +T +I    I+SE+S+ 
Sbjct: 637 EAKNSGAIQLFEDMYGDDVRVVSTGTSDH-PYSRELCGGTHARNTADIGCFKIISETSVG 695

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + +RR+EA+T      ++  ++++L  +A  LK    +VV RVE + +E   L+    + 
Sbjct: 696 SNVRRLEALTSLGYIDYMKTREDELSQIACLLKCRPQDVVSRVEALKDEKNALEKKVKEA 755

Query: 778 -----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGIS 831
                  +++    +   + D   +   +  V  K+L+SV D + +++ +    +L+  +
Sbjct: 756 LTGSSSQKVSSALENALDLGDYKVVLAHLEGVSGKDLRSVWDGIHQRLGEKSACVLLSAT 815

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            +K   +       +   FNA  L +  A     G GGGRP MAQ+GG      + A+A 
Sbjct: 816 ADKVQLLAAATQAAVDAGFNAGALIKNIAP-CVDGRGGGRPVMAQAGGNRVEGINDALAL 874

Query: 892 VASFL 896
               L
Sbjct: 875 AKQLL 879


>gi|307152653|ref|YP_003888037.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306982881|gb|ADN14762.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 881

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/906 (37%), Positives = 517/906 (57%), Gaps = 50/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL+F+ K  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+K  Y   T
Sbjct: 9   SGSEIRSYFLDFYAKKEHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQKSDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+ ++V+ ED+EAF+LW+   G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 NRIIVSVFQEDDEAFELWRDKIGIPPHRIKRMGEEDNFWKSGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDKNIDLEDDSRFIEFYNLVFMQYNRDAQGNLTPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ++ ++ G+ Y   +    ++ +VI DH+R+   +IADGI  +N GRGY
Sbjct: 243 NYETDLIFPIIQSAAEIAGIDYKKADEKTKISLKVIGDHVRAVVHMIADGITASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G     +  +     +     YP +   +  I+  L+ E+  F 
Sbjct: 303 ILRRLIRRVVRHGRLIGIDGAFINKVAEVAISLSEDIYPIVRVRETPIKAELQKEEAAFL 362

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+RG  LL  +++ +   K + ++G  AF LYDT+G PL++ Q+I   +GL  +D   
Sbjct: 363 VTLERGEKLLSEIIADVKRRKKKQISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDEDQ 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+ +++Q+ R++A    +   T +     L E    TQF+GY                 
Sbjct: 422 FNEEMKKQQERSKAAHETIDL-TVQGSLDKLAEHIHPTQFLGYQ---------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + ++ ++  G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G   G+
Sbjct: 465 -------DAASVAQIEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYITGE 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DVQK++   FVH   VERG +    ++  TID   RR++  +H+ATHLL  AL
Sbjct: 518 NLVIRVEDVQKES-AFFVHFGRVERGTVSVGDTITATIDRACRRRVQAHHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   VSQ GS +T D LRFD    + +T  EL+ IED +N  IA+     T IM  E
Sbjct: 577 KKIVDESVSQAGSLVTFDRLRFDFNCPRAVTPQELQQIEDLINSWIAEAHDAHTYIMALE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  I+SES I 
Sbjct: 637 EAKAKGAVAMFGEKYGAEVRVLDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGIA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHA 775
           +G+RRIEA+ G     +L  +D  +K L    KV    +  R+  +  E +    QL  A
Sbjct: 692 SGVRRIEAVAGPAVLEYLNERDTVVKDLCDRFKVKPNEISDRITALQSELKATLKQLEAA 751

Query: 776 KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +++L +   D    +   + +   +   +  VD   L +  + LQ+K+  G ++L  IS 
Sbjct: 752 QQELAIAKSDQLLANADAVGEFKVLVAEMEGVDPNGLMTAAERLQQKLGEGAVILGAISA 811

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K S++   +  ++   +  A       AK+ GGGGG GRP++AQ+GG + +K   A++
Sbjct: 812 EGKVSLVAAFSPKVVKEKKLQAGKFIGEVAKICGGGGG-GRPNLAQAGGRDPSKLKDALS 870

Query: 891 GVASFL 896
                L
Sbjct: 871 AAKKQL 876


>gi|327398418|ref|YP_004339287.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181047|gb|AEA33228.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 860

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/908 (39%), Positives = 526/908 (57%), Gaps = 60/908 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S +R  FLE+F++NGH ++ S+ L+P NDPTL+F N+GMV FKN+F G+EK  Y  
Sbjct: 1   MKS-SDLRKAFLEYFKENGHTIVKSAPLVPKNDPTLLFVNAGMVQFKNVFLGKEKRDYAR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI   WD +T+   +
Sbjct: 60  ATSCQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFGWDFVTRVLGI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+IT++ +D+EAF++W K  G+ + +I+R+  +DNFW+M +TGPCGPCSEI  DQG
Sbjct: 120 DKDKLWITIFKDDDEAFEIWNKQEGVPSSRIVRMDEHDNFWAMGDTGPCGPCSEIHIDQG 179

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +  G P    + + +RY+E+WNLVFMQ+ +        LPK SIDTGMGLER++ +LQ
Sbjct: 180 PDVGCGKPNCSVACDCDRYLELWNLVFMQYNRDEDGNMTPLPKPSIDTGMGLERVSAILQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              +N+DID+F+H+I    +   + Y  + N  V  RVI DHLR+  FLIADG+ P  EG
Sbjct: 240 GVHSNFDIDIFRHIIGNISEFFRIDYGKDSNRDVGVRVIADHLRAMDFLIADGVFPDKEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM + + LG  EP +   +  +   MG  YPEL+Q K ++   +++E+E
Sbjct: 300 RGYVLRRIMRRAMRFGKKLGANEPFLYRFIDTVNDVMGDVYPELLQNKEMVVNVVKAEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +TLD GL +L+ +     K  +++ + AFKLYDT+G P+D+  DI    G   +D+ 
Sbjct: 360 QFFETLDSGLRILNDIFDKATKR-VVDAESAFKLYDTYGFPIDLTVDIAKENGFE-VDVK 417

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN+ LE+QR  +R    G G       +  + ++ G T+F+GYD               
Sbjct: 418 DFNELLEKQREASRKSWKGSGDEFVWDAFGDIYKQKGKTEFVGYDEFET----------- 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + +  IV + + ++E         +FD+TPFYAE+GGQ+ DTG  + 
Sbjct: 467 ------------KARLLGIVGKDKKIKEQAQRGVYYFIFDKTPFYAESGGQVADTGFILK 514

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
              R  ++DV+K  +G +FVH   V  G         L I+   R+ ++ +H+ATHLL  
Sbjct: 515 GNARAFVSDVKKYFDGNLFVHKVDVLEGEFELNDECDLRINVARRKNIARHHTATHLLDA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV Q GS +  + LRFD TH   +T  +++ IE+ +N  I +N PV T  M+
Sbjct: 575 ALIKILGKHVRQAGSLVEDNRLRFDFTHFSKLTDEQIEEIEELINSWIVENYPVKTETMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            +DAI SGA AL   KY+D VRVVSV     G  S  LCGGTHV ++GEI L  ++ ES+
Sbjct: 635 LDDAINSGAIALFDEKYSDEVRVVSV-----GNISKELCGGTHVKASGEIGLFKVIHESA 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           +  GIRRIEA  G  A  ++   ++ LK  AS L +    +            +      
Sbjct: 690 VAKGIRRIEAKVGVEAYEYVKQIEKVLKDAASKLGIPITELPL--------KIEELKKKK 741

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             K Q   +     K+  ++    +    D  EL+ + D ++ K++S I++L    K+ +
Sbjct: 742 TLKSQPKFDPSKVVKVNGIDVYVDVFENEDVSELRHLGDTVKSKLKSCIVVLFD-KKDDR 800

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQA 888
            +V+++VT+DL +R  A D+    ++ L                  AQ GG + ++ ++ 
Sbjct: 801 VNVIVMVTKDLANRIKAKDVVGKISRALGGKGGGKE--------EFAQGGGRDLDRLEEI 852

Query: 889 IAGVASFL 896
           I  + SFL
Sbjct: 853 IRSINSFL 860


>gi|147668699|ref|YP_001213517.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1]
 gi|205830043|sp|A5FSU1|SYA_DEHSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146269647|gb|ABQ16639.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1]
          Length = 871

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 512/907 (56%), Gaps = 47/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MASCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
              RL+ITVY +D+EA  LW K  G+  ++I+R+   DNFW    ++GPCGPCSEI +D 
Sbjct: 116 PAERLWITVYLDDDEAIALW-KEQGVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G+    G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++
Sbjct: 175 GQETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K N Y+ D+F  +++ +  ++G KY  +       R++ +H R  +FLIADG++P   
Sbjct: 235 QSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKA 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + R LG   P ++ +  A+   M   YPEL + +  + E + SE+
Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL  GL LL+ ++    K   ++G  AFKLYDT+G P+++  +I   +GL+ +D+
Sbjct: 355 ARFSETLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDL 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR++AR+                       T F+GY+L             
Sbjct: 413 DGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAEKTCFVGYEL------------- 459

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +K I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I
Sbjct: 460 ----------AIQKSTIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L  
Sbjct: 510 TDAGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQT 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    M 
Sbjct: 570 ALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SESS
Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRPAV---SAELCGGTHVTASGEIALFKIMSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+    
Sbjct: 687 VGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQ 746

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + Q++  +             V  +   ++ V++  L+   D L+ K+ SG+I+L G 
Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GT 805

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   L +VT DL+ + ++A ++ +  +++ GGGGG G+P+MAQ GG + +K D+A+
Sbjct: 806 VTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGGG-GKPNMAQGGGRDKSKLDEAL 864

Query: 890 AGVASFL 896
             V   +
Sbjct: 865 QAVKGMI 871


>gi|256618959|ref|ZP_05475805.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256598486|gb|EEU17662.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
          Length = 880

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           I +VN + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDIKEVNGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|307709086|ref|ZP_07645545.1| alanyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307620032|gb|EFN99149.1| alanyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 872

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 499/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I     
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAD 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-IASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAAGNLVATVTNVQKAPNGQALHTVEV-HAPLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|225857018|ref|YP_002738529.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|225726317|gb|ACO22169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 872

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLVIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDVVAGKL 872


>gi|118444620|ref|YP_878353.1| alanyl-tRNA synthetase [Clostridium novyi NT]
 gi|205830036|sp|A0Q151|SYA_CLONN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118135076|gb|ABK62120.1| alanyl-tRNA synthetase [Clostridium novyi NT]
          Length = 879

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/908 (38%), Positives = 519/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEM+GNFSFG YFK   I  AW+  T+   L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KEKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHGV-GPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++     +   KY  +    V+ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIKSILDKVAALANTKYGEDELKDVSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKDYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +  L K+  ++L+G+  FKLYDT+G PL++ ++IL  +G+  +D+
Sbjct: 359 FAETIDSGMEILKEYIEDLEKNNKKVLSGEKVFKLYDTYGFPLELTEEILEEKGIT-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            SFN+ ++EQR RARA         T+            T F GY+ L            
Sbjct: 418 DSFNKEMKEQRERARAARSESTYMGTDVKILDTIPSEIETTFDGYENLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S VK I++     +    G+K  +V D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSKVKVIIKDDAFADCINKGEKGIIVTDRTPFYAEMGGQIGDKGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ D +    G  VH   V  G ++ E  ++L +D + R  +  NHSATHLLH 
Sbjct: 515 ADGFMAKVQDCKNNIGGKIVHFVEVTEGSIKLEDEVLLEVDRKRRENIGKNHSATHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  D LRFD TH + +T  ELK +ED VND I     VVT+ M 
Sbjct: 575 ALRKVVGEHVHQSGSYVDEDKLRFDFTHFESLTHEELKKVEDLVNDTIESVWDVVTKEMT 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY D+VRVV +     G  S+ LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEAKNSGAMALFDEKYGDKVRVVKM-----GDFSTELCGGTHISNVGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLI 773
           I AG RRIEA+TG +A   +  + + L+ +AS LK S+ +++ R+ +   E   +  ++ 
Sbjct: 690 IAAGTRRIEAVTGHKALEFIEHKSDLLRQIASMLKCSEKDIINRLNQQNAELKDKDKEIS 749

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED     I +V  +   ++   +VD + L+++ D ++ KI+SG+++L G 
Sbjct: 750 ALKSKLASGSEDDILKNIKEVKGVKLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D++ +  +   + R  AK+ GGGGG GRP MAQ+GG    K + AI
Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGGG-GRPDMAQAGGRLPEKLNDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NEVENIME 875


>gi|295111268|emb|CBL28018.1| alanyl-tRNA synthetase [Synergistetes bacterium SGP1]
          Length = 879

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/906 (37%), Positives = 501/906 (55%), Gaps = 47/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R  FL+F+++ G    PS SLIP +DP+L+FT +GMVP K  + G  +P Y  + 
Sbjct: 5   TGRELREMFLKFWEEKGSHRCPSFSLIP-DDPSLLFTIAGMVPLKPYYLGIRQPPYPRIV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI  AW+ LT    LD 
Sbjct: 64  TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGSYFKKEAITWAWEFLTDRIGLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY T+Y +DEE+ ++W + +GL  D+I+R   ++N+W M +TGPCGPCSEI++D+G  
Sbjct: 120 NRLYATIYQDDEESREVWHRQAGLPEDRILRFGQDNNYWFMGDTGPCGPCSEIYYDRGPD 179

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P  G   + +RY+EIWNLVF QF++Q       LP  +IDTGMGLER+A+V+Q  
Sbjct: 180 YGCGKPSCGVGCDCDRYLEIWNLVFTQFDRQKDGSLPNLPHKNIDTGMGLERLASVVQGV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +Y+ DLF  LI+ +    G++Y   G N +  RVI DH+RS +F++ADG+LPAN+G G
Sbjct: 240 DTDYETDLFTPLIRHTCARAGIQYGQGGRNDMAVRVIADHVRSVAFMLADGVLPANDGPG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RLLG+    +   +P L   MG  Y ELI  +  IE+ +  E+ERF
Sbjct: 300 YVLRRLLRRAVRFGRLLGFEGAFLCEYMPILIDLMGDPYRELIDQRPTIEQIITVEEERF 359

Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            +TL +G  L +   + L       + G+V F LYDT+G P ++ +++   +G A +D  
Sbjct: 360 QRTLQQGTDLFEAETARLAAAGRREVPGEVVFTLYDTYGFPPELTREMADEQGFA-VDEA 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F  A+++QR RARA S    S     ++  L+ + GAT+F GY    G           
Sbjct: 419 GFKAAMQQQRDRARASSKQKKSALAGDVYTELENEGGATRFTGYASAMG----------- 467

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       +  V AI+ +    +      + E+V D+TPFYAE GG++GDTG    
Sbjct: 468 ------------AGKVTAILTKEGRRDHVEGNGEFELVLDETPFYAERGGEVGDTGTIRD 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               L++ +      G+ VH   +  G +R   S+    D   R+ +  NH+ THLLH A
Sbjct: 516 GETTLEVLNTV-PHGGVIVHRVRMTEGSVRVGDSMTAEADDARRQAIRRNHTGTHLLHEA 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS +T   LRFD TH  P+T  +++ +E  VN  I +N+PV T     
Sbjct: 575 LGRVLGRHVRQAGSLVTDRFLRFDFTHHTPLTDGQIEEVERIVNGEILRNVPVSTAEHTL 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA AL   KY D VRVV+V        S  LCGG HV +TG+I    ++ E SI
Sbjct: 635 EEARELGAKALFDEKYGDVVRVVTVP-----DFSMELCGGLHVRATGDIGSFKVLREESI 689

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---I 773
            +G RRI A+TG      +       + L   L   +  +  + +++ EE R LQ     
Sbjct: 690 GSGTRRILAMTGMEVVELMQVLFGLRRRLMGILSADEEGLEAKAKDLAEELRALQKRAQE 749

Query: 774 HAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            A+ +L  NV+  +   ++           +V S  L+ V D ++      + +L  + +
Sbjct: 750 RARHELTDNVDRFVERRRVGGAVLHIGRFPDVKSDVLRDVGDRVKAGPDPSVALLASVDE 809

Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               +++++  +  +    NA  + R ++ VL GG GGGRP  AQ GG +G K D+A+  
Sbjct: 810 NGACTLIVMADDRAVKLGANAGAIVREASAVL-GGKGGGRPSTAQGGGRDGEKLDEALER 868

Query: 892 VASFLK 897
            A  LK
Sbjct: 869 AAEVLK 874


>gi|257078902|ref|ZP_05573263.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294779572|ref|ZP_06744966.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|256986932|gb|EEU74234.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|294453362|gb|EFG21770.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1]
          Length = 880

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/917 (38%), Positives = 517/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +     + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDANGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + D+N + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|163849369|ref|YP_001637413.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|205830020|sp|A9WCR2|SYA_CHLAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|163670658|gb|ABY37024.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
          Length = 894

 Score =  853 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/918 (39%), Positives = 519/918 (56%), Gaps = 57/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TFL FF ++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+        D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++        LP+ S+DTGMGLERMA 
Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  +I    +  G   ++   +   +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++ ++  +MG AYPEL++ + LI      
Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L GV+       ++++ G+ AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA +     G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERLSDR----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  ++  G+ +  A +G+ V++V D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+K +   EL+ +E  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGE 704
            I   +DA+A GA AL G KY D VR+V++       E E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + IVSE SI +GIRRIEA+TG+ A   +  Q + L+ LA+ +      ++ R++ + 
Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINTQPAQLLERIDALL 753

Query: 765 EE--YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819
            E   RK +L   + KL     DL   ++  V  +  + +EV++     L+ + + L+ K
Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + + +I+L G     K  +L +VT DL+ R  NAV L +  A ++GGGGG GRP +AQ+G
Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALVGGGGG-GRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K   AI      L
Sbjct: 872 GRHPDKLAAAIGAAVEVL 889


>gi|222527366|ref|YP_002571837.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|222451245|gb|ACM55511.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 894

 Score =  853 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/918 (39%), Positives = 519/918 (56%), Gaps = 57/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR TFL FF ++GH  +PSSSL+  +DPTL+F NSGMV FK++F G+E+  Y    
Sbjct: 5   TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R  GKHNDL+ VG + RHHTFFEMLGNFSFG YFK  AI LAW LLT+EF L  
Sbjct: 65  TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            RL+ TV+        D+EA  LW    G    +++R    DNFW M +TGPCGPCSEI 
Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183

Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G+ +      G + +   Y+EIWN VFMQ+++        LP+ S+DTGMGLERMA 
Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRA---TMQPLPRPSVDTGMGLERMAM 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           V+Q   + Y+ DLF  +I    +  G   ++   +   +R I DH R+ +FLIADG+LP 
Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N GR YVLRRI+RRA    R +G+  P +  ++ ++  +MG AYPEL++ + LI      
Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360

Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ +F +TL  GL  L GV+       ++++ G+ AF L DT+G PLD+ Q I   +GL 
Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   +  A+ EQR+R+RA +     G  + +W  L     A+ F GY+ L        
Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERLSDR----- 471

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  ++  G+ +  A +G+ V++V D TPFYAE+GGQ+GDT
Sbjct: 472 ------------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  +G    +QI D ++   G+ VH+  V  G +     +  T+D   R  +  NH+ATH
Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  AL  +LG H +Q GS + PD LRFD TH+K +   EL+ +E  +N  +  +  V  
Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGE 704
            I   +DA+A GA AL G KY D VR+V++       E E     S  LCGGTHV+ TGE
Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + IVSE SI +GIRRIEA+TG+ A   +  Q + L+ LA+ +      ++ R++ + 
Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINAQPAQLLERIDALL 753

Query: 765 EE--YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819
            E   RK +L   + KL     DL   ++  V  +  + +EV++     L+ + + L+ K
Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + + +I+L G     K  +L +VT DL+ R  NAV L +  A ++GGGGG GRP +AQ+G
Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALVGGGGG-GRPEIAQAG 871

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K   AI      L
Sbjct: 872 GRHPDKLAAAIGAAVEVL 889


>gi|148997564|ref|ZP_01825169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|168575843|ref|ZP_02721758.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|194397245|ref|YP_002038030.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|307068035|ref|YP_003877001.1| alanyl-tRNa synthetase [Streptococcus pneumoniae AP200]
 gi|147756619|gb|EDK63660.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|183578173|gb|EDT98701.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|194356912|gb|ACF55360.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|306409572|gb|ADM84999.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae AP200]
          Length = 872

 Score =  853 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/915 (35%), Positives = 498/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQLSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGRN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|57233592|ref|YP_180805.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|83305845|sp|Q3ZAE4|SYA_DEHE1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57224040|gb|AAW39097.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 871

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/907 (37%), Positives = 514/907 (56%), Gaps = 47/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T+ QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MTSCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
              +L++TVY +D+EA  LW K  G+   +I+R+   DNFW    ++GPCGPCSEI +D 
Sbjct: 116 PAEKLWVTVYLDDDEAIALW-KEQGVPEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G+ +  G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++
Sbjct: 175 GQEMGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q + N Y+ D+F  +I+ + Q++G +Y  +       R++ +H R  +FLIADG++P   
Sbjct: 235 QFRKNVYETDIFAPVIEKACQLSGRQYGIDAETDKALRIVSEHSRGITFLIADGVIPDKA 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + R LG  +P ++ +  A+   M   YPEL + +  + E + SE+
Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELNKRQAYVLEMIASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL  GL LL+ ++    K   ++G  AFKLYDT+G P+++  +I   RGL+ +D+
Sbjct: 355 ARFSETLATGLELLEEIVRQT-KGGQISGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDL 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR++AR+                       T F+GY+L R           
Sbjct: 413 GGFEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEKTCFVGYELTR----------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I
Sbjct: 462 ------------QKSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G R ++ +      G+F+H   V  G L+   +    ID + RR ++ NH+ATH+L  
Sbjct: 510 TGGGRFEVKNTLHLPNGVFLHQGRVISGCLKIAETAAAHIDEERRRDIARNHTATHILQT 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  V Q GS +TP+ LRFD +H KP+T  E++  E+ VND I +NLPV    M 
Sbjct: 570 ALRQVLGEQVQQRGSVVTPERLRFDFSHLKPMTKDEIRRAEEFVNDKIRRNLPVYAEEMP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A+  G  AL G KY DRVRV+ V        S+ LCGGTHVS++GEI L  IVSESS
Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRPAV---SAELCGGTHVSASGEISLFKIVSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+ A +++  Q + L  L+  L+ +      ++ E+ EE   L+    
Sbjct: 687 VGAGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESPRKLAELKEEIDTLKKTVQ 746

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + Q++  +             +  +   ++ V++  L    D L+ K+ SGII+L G 
Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLHETADFLRDKLGSGIIVL-GT 805

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   L +VT DL+++ ++A ++ +  +++ GGGGG G+P+MAQ GG +  K D+A+
Sbjct: 806 VSEDKPFFLCMVTPDLIEKGYHAGNIVKKLSQIAGGGGG-GKPNMAQGGGRDKAKLDEAL 864

Query: 890 AGVASFL 896
             V   L
Sbjct: 865 QAVKGML 871


>gi|307243232|ref|ZP_07525403.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306493360|gb|EFM65342.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 878

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/906 (36%), Positives = 516/906 (56%), Gaps = 49/906 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR+ F +FF+   H +  S SLIP ND +L+  NSGM P KN F+G E P    ++T
Sbjct: 6   LNEIRSRFTKFFESKEHYIAKSHSLIPSNDKSLLLINSGMAPLKNYFSGVEIPPKNRMST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+R G    D++NVG T RH TFFEM+GNFSFG YFK+ AI  AW+ +T   ++ + 
Sbjct: 66  VQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKEAIAWAWEFITVWLEIPEE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L++TVY+ D+EA+ LWK + G   +KI+R+  +DNFW +   GPCGPCSEI+FD+GE  
Sbjct: 122 KLWVTVYESDDEAYNLWKDMIGFPEEKIVRLGKDDNFWEIGL-GPCGPCSEIYFDKGEKY 180

Query: 184 PGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        + +R++E WNLVF QF+++       L   +IDTGMGLERMA V+QE  
Sbjct: 181 GCGCEDCKPGCDCDRFLEFWNLVFTQFDRKEDGSYGELDHKNIDTGMGLERMACVMQEVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +++D  + ++    Q+ G+ Y  +     + R+I DH+RS +F++ DGILP+NEGRGY
Sbjct: 241 TIFEVDTIRSVLNRVCQLAGITYGQDAKKDKSVRIITDHIRSVAFMVGDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + RLLG  +  +  ++  +    G AYPELI+    I++ +  E+E+FG
Sbjct: 301 VLRRLLRRAARHGRLLGIKDNFLNEIVEVVFDTCGQAYPELIEKNDYIKKVIGIEEEKFG 360

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL++GL +L      L  G  + ++G+ AFKLYDT G PLD+  +IL   GL  +D   
Sbjct: 361 ETLEQGLEILKSYTEDLVAGGGDTISGEQAFKLYDTFGFPLDLTMEILEDEGLK-VDTEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + ++ Q+ RARA          ++   +  E   ++ F GY  L  +           
Sbjct: 420 FEKEMQAQKDRARAARGNTEGDAWKEDPLTSLED-ASSSFDGYHNLVKA----------- 467

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +KA+V    +V+    G +  ++ D+T FY   GGQ+GD G  + D
Sbjct: 468 ------------STIKAMVADNALVDTLEEGLEAAIILDETSFYPNGGGQVGDKGQILSD 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
               ++ D  K A G   H   +  G L     +   +D   R   + NH+ATHLLH AL
Sbjct: 516 TGLFEVEDTVKGANGSIKHIGRIVSGSLTKGEKVETRVDKALRMDAARNHTATHLLHKAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV+Q GS + P  LRFD+TH + +T  E+  +E  VN+ I +  PV   +MN  
Sbjct: 576 KEVLGDHVNQAGSLVEPYRLRFDITHFEAMTKEEISRVEAMVNEFILEAHPVTAELMNIN 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA AL G KY + VRVV +     G  S  LCGGTH+ +T ++ +  IVSE  + 
Sbjct: 636 EARAMGAMALFGEKYGEEVRVVKM-----GDCSVELCGGTHLDNTSQVGMFKIVSEGGVA 690

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEAITG+    +++ +D  + +++  +K  + N+V R   + +E ++L+      
Sbjct: 691 AGVRRIEAITGRAVYQYMLAKDSLINNISDIMKTREDNLVVRANSLVDENKQLEKEVHDL 750

Query: 778 KLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++++++          I  V  ++    ++D   L+ V D L+ K+ + +++L  I+ 
Sbjct: 751 KSKISMQNAGNALDDSLDIKGVKLLTAKYEDMDIDTLREVADNLRDKLGTSVVVLANIAG 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K + +   ++D +D+  +A ++ R  AK+ GG GG GRP+MAQ+GG +    DQA+A 
Sbjct: 811 D-KINFVATASKDAIDKGAHAGNIVREVAKIAGGKGG-GRPNMAQAGGSDKTMVDQALAS 868

Query: 892 VASFLK 897
               ++
Sbjct: 869 AQKVVE 874


>gi|313885025|ref|ZP_07818777.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619716|gb|EFR31153.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 883

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/917 (36%), Positives = 512/917 (55%), Gaps = 62/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF +  H++ PS+SLIP NDPTL++ NSG+   K  F G E P    +T
Sbjct: 5   TSAQIRQMYLDFFAEKNHDVKPSASLIPINDPTLLWINSGVATLKKYFDGTEVPANPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QKC+R     ND++NVG T RHHT FEMLGN+S G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKCIRT----NDIENVGVTARHHTLFEMLGNWSIGDYFKEEAIAWAWEFLTSDKWMGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +   LY T Y ED +  ++WK+    + D ++ +   DNFW +   GPCGP +EIF+D+G
Sbjct: 121 EPELLYATYYPEDTDTPEIWKQQPNFNPDHLVPV--EDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ER++EIWNLVF +F          LP  ++DTGMGLERM
Sbjct: 178 EAYNNLAEDDPENYPGG--ENERWLEIWNLVFSEFNHMPDDTYQPLPNKNVDTGMGLERM 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+  E +T G+ YE  G N V+ +VI DH+R+ SF I+DG 
Sbjct: 236 TSVVQDTPTNFETDLFLPIIKQIEGLTDGIVYEEAGANKVSFKVIADHIRAVSFAISDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY+LRR++RR++ + R LG  +  +  L+P +   MG  Y EL +    ++  
Sbjct: 296 LPSNEGRGYILRRLIRRSVMHGRRLGIKDKFLAQLVPTIAQIMGQFYSELQEKVEFVQSV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L SE++RF +T++ G   L  ++  L  +E+  + GD AFKLYDT G PL++ Q+    R
Sbjct: 356 LASEEDRFHETIEAGEDHLVSIIESLKTEEVYEIPGDQAFKLYDTFGFPLELTQEEAELR 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G + +D   F   +E+QR RAR       S   +   F+  + +    F+GYD L  +  
Sbjct: 416 GFS-VDTQGFEAEMEQQRQRARQARSKEESMNVQSTVFT--DIHTEYDFVGYDSLVSN-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + VKAIV + E V+     Q   V F+++PFYAE GGQ+
Sbjct: 471 ---------------------ATVKAIVFEDESVQNLAKNQIGWVFFNRSPFYAEMGGQI 509

Query: 529 GDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            D G  +     + ++ DVQK   G  +H        +  + S  L +D ++R   + NH
Sbjct: 510 ADKGLIMDGNDEVGRVLDVQKAPNGQAMHKVEALTMPINLDQSYTLQVDPKHRTLTNQNH 569

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS + PD LRFD +H   +T+ E+K++ED VN  I  +L
Sbjct: 570 TATHLLHRALKDVLGDHANQAGSYVGPDRLRFDFSHFGKMTAEEIKAVEDKVNAFIEASL 629

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T  M  ++A A GA AL G KY D VRVV++  E     S  LCGGTHV++T +I  
Sbjct: 630 AVNTTEMPIDEAKALGAMALFGEKYGDVVRVVNISNE-----SIELCGGTHVANTNQIGT 684

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEE 766
             ++SE+ I AGIRRIEA+TGQ A ++   Q+  L  +   LKVSQ + +V R++++  E
Sbjct: 685 FKLLSETGIGAGIRRIEALTGQAAFNYYRDQEAILHQIQDRLKVSQTDMLVNRIDQMQAE 744

Query: 767 YRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQ 821
            ++   Q+   + K+     D    ++ +V  +S+I   + +  +  ++ + D  ++K  
Sbjct: 745 LKEAHAQIESLQAKVMQAASDKLFDEVKEVGAVSYIALSLKDQSADAMRQLGDIWKQKAN 804

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + ++++   + EK   +++   + +     A DL +  AK + GG GGG+P MAQ+GG N
Sbjct: 805 ADLLIVAADNGEKANLLVLANDQAIDKGVKAGDLIKALAKYVQGG-GGGKPQMAQAGGKN 863

Query: 882 GNKADQAIAGVASFLKK 898
                + +  +   ++K
Sbjct: 864 PVGIPELMESIDLEIEK 880


>gi|168493286|ref|ZP_02717429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|221232124|ref|YP_002511277.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|183576772|gb|EDT97300.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|220674585|emb|CAR69148.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 872

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 499/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAAILKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|119487555|ref|ZP_01621165.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119455724|gb|EAW36860.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 891

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/916 (37%), Positives = 510/916 (55%), Gaps = 60/916 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL F+ + GH+++PS+SL+P  DPT++ T +GM+PFK IF GQ  P     T
Sbjct: 9   SGSEIRQKFLNFYAERGHKIMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRPPEVPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI   W+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTQAIAWGWELSTEVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+++D+EAF++W+   G+ A +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLVVSVFEDDDEAFEIWRDEIGIPAHRIQRMGEDDNFWKSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 184 L-GDDKIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQSVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  + G+ Y+ ++    V+ +VI DH+R+   LI DG+  +N GRGY
Sbjct: 243 NYETDLIFPIIKTAADIAGIDYKKSDKKTQVSLKVIGDHVRAVVHLITDGVTASNIGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G        +           YP+  + + +I+  L+ E+ERF 
Sbjct: 303 ILRRLIRRVVRHGRLIGIEGEFTTKVAETAIRLSEEVYPQTRERETVIKAELQREEERFL 362

Query: 360 KTLDRGLVLLDGVLSHL------------GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +TL+RG  LL  ++                   +++G  AF LYDT+G PL++ Q+I   
Sbjct: 363 ETLERGEKLLTDIIEKAISKEIPPQSPLSKGGGMISGKDAFVLYDTYGFPLELTQEIAEE 422

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D+  F   +EEQR+R++     +   T +     L E    T F+GY  L    
Sbjct: 423 SGLT-VDVSGFEVEMEEQRNRSKDAHETIDL-TVQGSLDKLAENIHPTAFLGYSELVS-- 478

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 ++VK I+ +G+ VE A +G KV++V DQTPFYAE+GGQ
Sbjct: 479 ---------------------EAVVKVILIEGKSVESAEAGTKVQIVLDQTPFYAESGGQ 517

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G        +++ DVQK++  IF+H   VERGIL   M++   ID   RR+   NH
Sbjct: 518 IGDRGFLSFGDTVVRVKDVQKESN-IFIHLGKVERGILTVGMTVNAQIDRACRRRAQANH 576

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  I+   +SQ GS ++ + LRFD    + +T  E++ +ED VN  IA+  
Sbjct: 577 TATHLLQSALKLIVDPTISQAGSLVSFERLRFDFNCPRSLTPEEVQQVEDQVNSWIAEAH 636

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P +   M  EDA   GA A+ G KY+D VRVV     D    S  LCGGTHV++T EI L
Sbjct: 637 PAIVAEMPLEDAKNKGATAMFGEKYSDVVRVV-----DYAGVSMELCGGTHVNNTAEIGL 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSE+ I +GIRRIEA+ GQ    +L  +D  +K L    K     +  R+  +  E 
Sbjct: 692 FKIVSETGISSGIRRIEAVAGQSVLDYLKVRDNVVKELGDRFKAKPEELPERITNLQNEL 751

Query: 768 R--KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  + QL  AK +L +   D        I D+  +   +  VD+  LK   + LQ+K+  
Sbjct: 752 KATQKQLEAAKGELAIAKSDQLLAEAETIGDIKILVAELPGVDADSLKKAAERLQQKLGE 811

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
             ++L    +E K S++   +  +    +  A       AK+ GGGGG GRP+ AQ+GG 
Sbjct: 812 SAVVLGSSPEEGKVSLVAAFSAKVHKEKKLQAGKFIGNIAKICGGGGG-GRPNFAQAGGR 870

Query: 881 NGNKADQAIAGVASFL 896
           + +K  +A+    + L
Sbjct: 871 DASKLSEALDTAKTQL 886


>gi|73748005|ref|YP_307244.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|83305846|sp|Q3ZWC3|SYA_DEHSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|73659721|emb|CAI82328.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
          Length = 871

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 512/907 (56%), Gaps = 47/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    
Sbjct: 1   MFSSDELRENYLKFFEEKGHKRIVSSSLIPHNDPTLLLTTAGMVQFKPYYMGVAKPENPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++
Sbjct: 61  MASCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
              RL+ITVY +D+EA  LW K  G+  ++I+R+   DNFW    ++GPCGPCSEI +D 
Sbjct: 116 PAERLWITVYLDDDEAIALW-KEQGVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G+    G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++
Sbjct: 175 GQETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K N Y+ D+F  +++ +  ++G KY  +       R++ +H R  +FLIADG++P   
Sbjct: 235 QSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKA 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + R LG   P ++ +  A+   M   YPEL + +  + E + SE+
Sbjct: 295 GRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL  GL LL+ ++    K   ++G  AFKLYDT+G P+++  +I   +GL+ +D+
Sbjct: 355 ARFSETLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDL 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E QR++AR+                       T F+GY+L             
Sbjct: 413 DGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAEKTCFVGYEL------------- 459

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S +K I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I
Sbjct: 460 ----------AIQKSTIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEII 509

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L  
Sbjct: 510 TGGGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQT 569

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    M 
Sbjct: 570 ALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMP 629

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SESS
Sbjct: 630 YRHALEEGVTALFGEKYGDRVRVLRVGRPAV---SAELCGGTHVTASGEIALFKIMSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+    
Sbjct: 687 VGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQ 746

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + Q++  +             V  +   ++ V++  L+   D L+ K+ SG+I+L G 
Sbjct: 747 NLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GT 805

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   L +VT DL+ + ++A ++ +  +++ GGGGG G+P+MAQ GG + +K D+A+
Sbjct: 806 VTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGGG-GKPNMAQGGGRDKSKLDEAL 864

Query: 890 AGVASFL 896
             V   +
Sbjct: 865 QAVKGMI 871


>gi|315174460|gb|EFU18477.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 880

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/917 (38%), Positives = 518/917 (56%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +L++TVY +D EA ++W+   GLS D II     DNFW +   GP GP +EIF+D+G
Sbjct: 121 DPEKLHVTVYPKDTEAKRIWRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+
Sbjct: 178 EEFLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I A E + T +KY       V+ +VI DH+R+ SF I DG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRR++RRA+ + + LG  E  +  L+P +   M S YPE++Q K  IE+ 
Sbjct: 296 LPSNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+ERF +T++ GL +L+ V+  +   K + L+G + FKLYDT G P+++ +++    
Sbjct: 356 VRTEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F   +E QR RAR+      S   +     L +    ++F+GY  L     
Sbjct: 416 GLK-VDHAGFETEMEAQRERARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+
Sbjct: 471 ---------------------SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQI 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +   + DV+K   G F+H   V    L       L +D + R ++  N
Sbjct: 509 ADRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + 
Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T +I 
Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IVSES I AG+RRIEA+T + A   L  ++ +LK +A+ +K  Q   VV + E++ +
Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQ 742

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           + R LQ  + +   KL           + D+N + +I ++V   D  +L+ + D  ++K 
Sbjct: 743 QLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWKQKE 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L   ++++K S+L  +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 803 LSDVLVLA-TAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A V ++L
Sbjct: 861 KNPAGIADALAEVENWL 877


>gi|260887236|ref|ZP_05898499.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|260863298|gb|EEX77798.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185]
          Length = 871

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/912 (37%), Positives = 518/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L+FF +K GH  LPS+SLIP NDPTL+   +GM PFK  FTG+ KP    
Sbjct: 1   MTGNELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH T+FEMLGNFSFG YFK+ AI  AW+ LT   DL
Sbjct: 61  ITTSQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TVY +D+EA  +W++  G   D I+++  +DNFW +   GPCGP SEI+ D G
Sbjct: 117 PKEKLWVTVYPKDDEAAAIWREQPGFPQDHIVKL--DDNFWEIG-PGPCGPDSEIYIDLG 173

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ
Sbjct: 174 EERGCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ + +V+G+ Y  N    V+ +VI DH RS + +I DGILP+NEG
Sbjct: 234 NKKTNFETDLLFPIIEYASKVSGVVYGENAEKDVSLKVIADHARSMAIMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRRI+RRA+ + R+LG  +  +   + A+      A  + EL + K  I++ +  E
Sbjct: 294 RGYVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL +G+ LL+G +  L     ++L G++ FKLYDT+G P ++  +IL    +  
Sbjct: 354 EDRFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHENEME- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  SF +A+EEQR RARA                                   +    D
Sbjct: 413 LDKDSFEKAMEEQRERARAARQ-----------------------------ENQRVAVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +         N   S V AI + G +V+E   G++  ++   TPFYAE GGQ+GD G
Sbjct: 444 LSGIDTSHLCVDENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +  R+Q+ + +K  +G   H   VE G+L+    + + ID+  +   + NH+ATHL
Sbjct: 504 LLETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G  V+Q GS + P+ LRFD ++ +P+T+ +L+ +E  VN+ I    PV   
Sbjct: 564 LQAALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIA 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A   GA AL G KY D VRVVSV        S  LCGG+HV + GEI +  IVS
Sbjct: 624 QMEIDKAKKLGAMALFGEKYGDVVRVVSVP-----DFSIELCGGSHVKNIGEIGMFKIVS 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G+RRIEA+TG+ A  ++  + E L + A   K     +V  +E    E +KL+ 
Sbjct: 679 ETGIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQ 738

Query: 773 IHA---KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A   K +   +V+ L   K  I D++F S I+   +  +L+ + D L  +++SG+++L
Sbjct: 739 EIASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              + E K S++   ++  + +  +A ++ + +AK++GGGGG GR  MAQ+GG    K  
Sbjct: 799 AA-AHEGKVSLVAKASDAAVAKGAHAGNIVKAAAKIVGGGGG-GRKEMAQAGGKEPAKMP 856

Query: 887 QAIAGVASFLKK 898
           +A+      L +
Sbjct: 857 EALQEAERVLAE 868


>gi|257055557|ref|YP_003133389.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585429|gb|ACU96562.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
          Length = 888

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/920 (36%), Positives = 514/920 (55%), Gaps = 61/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   FL++F+++GH  +PS+SLI  +DPTL+F N+GMV FK  F G+  P Y   
Sbjct: 1   METHEINKRFLDYFERHGHTKVPSASLI-LDDPTLLFVNAGMVQFKPYFLGEVPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D+D VG+T RH+TFF+M GNFSFG YFK+ AI+LAW+ +T      
Sbjct: 60  TSVQKCVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKQGAIELAWEFITTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L+  RL+ TVY+ D EA  LW+ ++GL +++I     +DN+W M   GPCGPCSEI+
Sbjct: 116 GLGLNPDRLWATVYEHDAEAAALWRDVAGLPSERIQFRGPDDNYWDMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ  +      Q       LP+ +IDTGMG+
Sbjct: 176 YDRGPEY-GREGGPVVDEDRYLEIWNLVFMQEMRGELSPKQGHAPIGELPQKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+ +G +Y  +  + V  RVI DH RS   LIAD
Sbjct: 235 ERVAYLLQGVENVYETDLVRPVITKAEEFSGRRYGADHADDVRFRVIADHARSGVMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RR +   RLLG  EP++      +   M  +YPE+ +    I 
Sbjct: 295 GVTPGNEARGYVLRRLLRRIVRSVRLLGVHEPVLPEFAAVVRDAMAPSYPEIARDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +R+E+E F  TL  G  + D            IL+GD AF+L+DT+G P+D+  ++  
Sbjct: 355 DVMRAEEEAFLATLTSGSRIFDLAAQETKRAGGTILSGDKAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F   +E+QR RA+A +    +G  +  ++  L E++G T+F+GY  L+ 
Sbjct: 415 EQGLS-VDEEGFRTLMEQQRQRAKADAASRKTGHGDLSVYRKLLEEHGETEFLGYTDLQ- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  ++ V  ++  G+ V  A  G   E+V D+TPFYAE G
Sbjct: 473 ----------------------ATARVLGLLVDGKPVRSASEGSVAELVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG  IG+G  L++ DVQ+   G+FVH   V  G +  +  L  ++D   R  ++ 
Sbjct: 511 GQIADTGVLIGEGAELKVLDVQRLVPGLFVHRVEVVAGEVGVDTQLTASVDGTRRASIAR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+    G+  +Q GS  TP  +RFD T  K ++   L  +E+ VND +  
Sbjct: 571 SHSATHLVHAAVRGAYGNRAAQAGSLNTPGRMRFDFTTPKSVSDDVLTEVEEEVNDYLQT 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V      ++ A+  GA AL G KY DRVRVV     D G +S  LCGGTHV   G++
Sbjct: 631 DVEVQAYTTTKDRALELGAIALFGEKYGDRVRVV-----DMGDYSRELCGGTHVERIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VS+SS+ +G+ R+EA+ G  A  H+  +   +  LAS LKV    V  R++++  
Sbjct: 686 GLVKLVSDSSVGSGVHRVEALVGTDALRHVRKEQLLVSQLASTLKVPADEVPSRIQDVLT 745

Query: 766 EYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819
             R  +    + +L+      +       +IA V+ ++  +  EVD+  L+ +   ++ +
Sbjct: 746 RLRNAEKEIEQLRLREVLNSASTLAERAREIAGVSVVAERLDQEVDAGALRKLTGEVRNR 805

Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + S  G++ L   S E K S ++  T +  D    A  L    A+++ GG GGG+P MAQ
Sbjct: 806 LGSRPGVVALFAPSGEGKVSFVVATTAEARDAGLAAGKLVPAFAELV-GGRGGGKPDMAQ 864

Query: 877 SGGPNGNKADQAIAGVASFL 896
            GG      +QAI  + + +
Sbjct: 865 GGGSRPEGVEQAIEALRAAV 884


>gi|330839006|ref|YP_004413586.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|329746770|gb|AEC00127.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 874

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/912 (37%), Positives = 518/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L+FF +K GH  LPS+SLIP NDPTL+   +GM PFK  FTG+ KP    
Sbjct: 4   MTGNELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH T+FEMLGNFSFG YFK+ AI  AW+ LT   DL
Sbjct: 64  ITTSQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TVY +D+EA  +W++  G   D I+++  +DNFW +   GPCGP SEI+ D G
Sbjct: 120 PKEKLWVTVYPKDDEAAAIWREQPGFPQDHIVKL--DDNFWEIG-PGPCGPDSEIYIDLG 176

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ
Sbjct: 177 EERGCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ + +V+G+ Y  N    V+ +VI DH RS + +I DGILP+NEG
Sbjct: 237 NKKTNFETDLLFPIIEYASKVSGVVYGENAEKDVSLKVIADHARSMAIMIMDGILPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRRI+RRA+ + R+LG  +  +   + A+      A  + EL + K  I++ +  E
Sbjct: 297 RGYVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIE 356

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL +G+ LL+G +  L     ++L G++ FKLYDT+G P ++  +IL    +  
Sbjct: 357 EDRFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHENEME- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D  SF +A+EEQR RARA                                   +    D
Sbjct: 416 LDKDSFEKAMEEQRERARAARQ-----------------------------ENQRVAVPD 446

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +         N   S V AI + G +V+E   G++  ++   TPFYAE GGQ+GD G
Sbjct: 447 LSGIDTSHLCVDENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +  R+Q+ + +K  +G   H   VE G+L+    + + ID+  +   + NH+ATHL
Sbjct: 507 LLETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G  V+Q GS + P+ LRFD ++ +P+T+ +L+ +E  VN+ I    PV   
Sbjct: 567 LQAALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIA 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A   GA AL G KY D VRVVSV        S  LCGG+HV + GEI +  IVS
Sbjct: 627 QMEIDKAKKLGAMALFGEKYGDVVRVVSVP-----DFSIELCGGSHVKNIGEIGMFKIVS 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I +G+RRIEA+TG+ A  ++  + E L + A   K     +V  +E    E +KL+ 
Sbjct: 682 ETGIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQ 741

Query: 773 IHA---KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             A   K +   +V+ L   K  I D++F S I+   +  +L+ + D L  +++SG+++L
Sbjct: 742 EIASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVL 801

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              + E K S++   ++  + +  +A ++ + +AK++GGGGG GR  MAQ+GG    K  
Sbjct: 802 AA-AHEGKVSLVAKASDAAVAKGAHAGNIVKAAAKIVGGGGG-GRKEMAQAGGKEPAKMP 859

Query: 887 QAIAGVASFLKK 898
           +A+      L +
Sbjct: 860 EALQEAERVLAE 871


>gi|319947341|ref|ZP_08021574.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319746583|gb|EFV98843.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 872

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 493/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y  D +++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPADTDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G    + +++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDATGNVVATVTDVQKAPNGQALHTVEV-HAPLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 AVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +   K K    V       + + N   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAVAGDVFKHVQEANGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKD----VHAGNLVKELAPIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|294628346|ref|ZP_06706906.1| alanyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831679|gb|EFF90028.1| alanyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 890

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/923 (37%), Positives = 511/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYKDDDEAEQIWHEVVGVPKERIQRLGMKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+         +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTGKDNFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ + ++TG+ Y   +   V+ RV+ DH+R+++ LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHASDVSLRVVTDHMRTATMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVRDLIDVVVNMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  ++   +   ++L+GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVTETKQSGGKVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T FIGY    G
Sbjct: 415 EQGLS-VDEEGFRRLMKEQRERAKADAQAKKTGHADLGAYREIADTAGETDFIGYTDTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVSSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D G  ++I D QK   G++VH  +V+ G +        +ID + R+ ++
Sbjct: 511 GQIGDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVHAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V       +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVALVTGQVPDGTTPDDLRKLVLDVRG 805

Query: 819 KIQSGIIMLVG--ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   +V        K   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRAAVVALFTVNNGKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +A+  V   + +
Sbjct: 865 QGGGQNPAAVGEAVDAVERLVAE 887


>gi|303326376|ref|ZP_07356819.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302864292|gb|EFL87223.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 892

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/916 (39%), Positives = 518/916 (56%), Gaps = 42/916 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF ++ HE++PS  LIP NDP+L+FTN+GMV FK +F G+EK  Y  
Sbjct: 1   MLTAQEIRRRYLDFFLRHRHEIVPSGPLIPPNDPSLLFTNAGMVQFKKLFLGEEKRAYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+R  GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK  AI  AW  +T+E  L
Sbjct: 61  AASCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAIAWAWQFVTEELQL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TV+ ED+EA ++WK ++GL+  +IIR+   DNFW+M +TGPCGPCSEI+ DQG
Sbjct: 121 PKEKLWVTVFREDDEAAEIWKDVAGLTDARIIRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E +  G        + +R++EIWNLVF QF+Q     R +L   +IDTGMGLER+A V Q
Sbjct: 181 EDMSCGPDCGIGKCDCDRFLEIWNLVFTQFDQAADGSRALLAAPNIDTGMGLERIAAVCQ 240

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE------GNNIVNHRVIVDHLRSSSFLIADGILP 292
            K +N+D DLF+ +IQ +  + G+ Y        +     RVI DH RS++FLIA+G+LP
Sbjct: 241 GKRSNFDCDLFQEIIQYAAGLAGVAYSFSAPDTNDVDTALRVIADHSRSAAFLIAEGVLP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA+ +A L+G  EP M  +   +   MG AYP+L+++   I+  + 
Sbjct: 301 SNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGEAYPDLLESADFIDRAVF 360

Query: 353 SEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL++GL LL+  L         ++ G   FKLYDT+G PLDI+ D+   RG 
Sbjct: 361 EEEQRFSLTLEKGLHLLEEELQRLEAAGQTVIPGAFCFKLYDTYGFPLDIVTDVAGKRGF 420

Query: 411 AGIDIISFNQALEEQRSRARAHSL-----GLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              D   F   + EQR RAR H       G G+G  +  +  L +    + F+GY+ L  
Sbjct: 421 TA-DGSGFEAHMREQRERAREHQKKGGLLGQGAGEGDAAFKKLADDGLRSVFVGYESL-- 477

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  S +   +   G  V+    G+    V ++TPFY E+G
Sbjct: 478 --------------------TAASPVTALLDAGGVPVDHLGEGETGFAVTEKTPFYGESG 517

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ GD G          +   +K A  + VH   V RG +       L++D  +R+  + 
Sbjct: 518 GQAGDAGLLAVVSGEAGVLTARKPAPDLIVHEIEVLRGEVHLGQEATLSVDADSRQSTAR 577

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ THLLH AL   LG+HV Q GS +    LRFD +H   +T  EL ++E +VN  I  
Sbjct: 578 NHTCTHLLHAALRRTLGTHVKQAGSLVDSRRLRFDFSHIAALTPEELAAVERDVNRAIMA 637

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPV  R M RE+A+A GA AL G KY + VRV++V  E     S  LCGGTH+S TG+ 
Sbjct: 638 DLPVAAREMPREEALAGGAMALFGEKYGETVRVLTVGCEGREPESMELCGGTHLSRTGQA 697

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IV+E+ + AG RRIEA+TG  A    + Q  +  +LA  LK   G +  RV+ +  
Sbjct: 698 GSFLIVAETGVAAGTRRIEAVTGWNAYGLAVEQRAEAAALAGLLKSKPGQLAERVQTLQT 757

Query: 766 EYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           E +K++    K                +I  V  ++  +  V  K L+ +MD ++ ++ S
Sbjct: 758 EVKKMRKASEKAAAAPVTGADLLRRAEEINGVRLLAARLENVPVKALREIMDDVRSRLSS 817

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             +  +   +E K  +L+ V++DL  RF A  L +  A   GG GG GRP +AQ+GG   
Sbjct: 818 AGVACLATVEEGKVGLLLYVSKDLHGRFTAPALIKEVAAPCGGAGG-GRPDLAQAGGTKP 876

Query: 883 NKADQAIAGVASFLKK 898
              D+A A + + ++K
Sbjct: 877 EGIDEAFAVLKTLIEK 892


>gi|225859149|ref|YP_002740659.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225720312|gb|ACO16166.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585]
          Length = 872

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L      +L ID   R ++  NH
Sbjct: 509 DYGQILDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYILAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|290580864|ref|YP_003485256.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254997763|dbj|BAH88364.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 872

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/915 (35%), Positives = 498/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++   H + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FDL
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPEWFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W +  G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIE-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L+ L     + L G   F+LYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA+ +  GS   +    S                      
Sbjct: 417 FK-IDHQGFQAAMKEQQERARANVVKGGSMGMQNETLS---------------------- 453

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                +  +         + S +  I+   E +E    GQ V +VF +TPFYAE GGQ+ 
Sbjct: 454 ----NITEKSTFNYEKEALDSSLSVIIADNERIEAVSEGQ-VLLVFSETPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++TDVQK   G  +H   V  G L    +  L ID++ R ++  NH
Sbjct: 509 DHGLIKNDKGDTVARVTDVQKAPNGQALHTVDVL-GSLSVGTTYHLEIDHERRNRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I + +
Sbjct: 568 TATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIWKAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL G KY   VRVVS+     G +S  LCGGTH+ +T EI +
Sbjct: 628 PVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK +A+ LK  Q   V  +V  + ++
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIAATLKAPQMNQVANKVASLQDQ 742

Query: 767 YRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +   K K            + +VN + +I S+V   D+  L++  D  ++K  
Sbjct: 743 LHKLQKENAELKEKAAAATAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADQWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   ++D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVTNIGKKVNVLVASKSKD----IHAGNLIKTLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +     IA VA  L
Sbjct: 858 ASAIKDLIAAVAENL 872


>gi|301794425|emb|CBW36859.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 872

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 499/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LL   + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLISPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|298243740|ref|ZP_06967547.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297556794|gb|EFH90658.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 880

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/909 (37%), Positives = 507/909 (55%), Gaps = 52/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL++F   GH  +PSSSL+P NDPT+M T +GM      F G+E P    +T
Sbjct: 8   TSTEIRARFLDYFASKGHVKVPSSSLVPRNDPTVMLTTAGMQQMIPYFLGRETPPGSRLT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC R      D+D VG   R  TFFEMLGNFS G YFK  AI  AW+ LT+   L  
Sbjct: 68  SSQKCFRT----TDIDIVG-NERTLTFFEMLGNFSVGDYFKREAITFAWEFLTQVIKLPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGE 181
           +RL+ TV+ ED+EA + W +I+G   + I+R+   DN+W     +GPCGP SEI++D+G 
Sbjct: 123 QRLHPTVHPEDDEAPRYWNEIAGYPDEAIVRL--EDNWWGPPGASGPCGPDSEIYYDRGV 180

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G        + ER++EIWNLVFMQF Q     R  LPK +IDTGMGLER++ V+Q 
Sbjct: 181 EHGCGRADCKPGCDCERFLEIWNLVFMQFFQDRDGGRTPLPKTNIDTGMGLERLSMVVQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K + +D D+F+ +I    Q+TG  Y        + RVI DH R+  FL ADG+LP+NEGR
Sbjct: 241 KESVFDTDIFRAIIDHFAQLTGKTYGQETRVDTSLRVIADHARALVFLAADGVLPSNEGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ RR++RRA+ + +LLG  +P +      +   MG  Y EL   +  I + L  E+++
Sbjct: 301 GYIFRRVLRRAVRHGKLLGLDQPFLSIAADTVIKLMGDYYTELRTQRDRIVDVLSLEEKK 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL+ GL LL  +LS L + EI  + G   FKLYD+HG P+++ Q+I   +G   ID 
Sbjct: 361 FSQTLNTGLQLLTSLLSDLRQKEISVIPGTEVFKLYDSHGFPVELTQEIASEQGFT-IDA 419

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F QA+++Q+ R+RA S        E     + ++ G T+F GY  + G          
Sbjct: 420 AGFEQAMQQQQERSRAAS-NFAQADHETNLDEVLQRIGPTKFTGYQGIAG---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        +  V A+   G  VE   + Q+   + D TPFYAE+GGQ+GD G  +
Sbjct: 469 -------------TGKVVALFVDGREVESISAPQQALAILDATPFYAESGGQIGDRGDLL 515

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++ D ++  +G++VH+  +  G LR   S+   +  Q R     NHSATHLLH 
Sbjct: 516 AQAGVFKVQDTRRPVKGLYVHYGEIAEGYLRVGDSVQAEVISQRREDTMRNHSATHLLHK 575

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+ V Q GS + P+ LRFD +  + +T+ EL  I+  VN  I  + PV T IM 
Sbjct: 576 ALRDLLGTQVEQRGSLVEPERLRFDFSSQRGLTTDELAQIDAQVNRWIRADYPVDTTIMP 635

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+A+GA AL G KY+D VRVVS+        S+ LCGGTH +STG+I L   V E+S
Sbjct: 636 IQEALATGAMALFGEKYDDLVRVVSMGS------STELCGGTHCASTGQIGLYLTVQETS 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+TG+ A ++L  +   + SLA+ L+V    +  RVE++  E   L+   A
Sbjct: 690 VAAGIRRIEALTGRAAEAYLRRRSALVDSLAARLQVQTDTLEARVEQMQHELSTLRKQVA 749

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           +   +  V       L   +++ V  ++  +   D K L+ + + ++ K++   ++++  
Sbjct: 750 QFMRENAVRQVETLVLQGQELSGVTIIATSVDVPDDKVLREMGEMMRSKLKQPHVVVLAA 809

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E++ ++ + V   L  R  +A  +A    + LGG GG GRP +AQ GG N  +   A+
Sbjct: 810 PLEERIALQVNVEPSLTKRGLHAGKIAAAVGQKLGGKGG-GRPDVAQGGGKNKAELGAAL 868

Query: 890 AGVASFLKK 898
             V  F+++
Sbjct: 869 DLVTQFVRE 877


>gi|218437893|ref|YP_002376222.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218170621|gb|ACK69354.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 881

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/906 (37%), Positives = 515/906 (56%), Gaps = 50/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR+ FL+FF KN H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+KP Y   T
Sbjct: 9   SGSEIRSYFLDFFAKNQHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQKPDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFKLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            ++ ++V++ED+EAF++W+    +   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 DQIVVSVFEEDDEAFEIWRDKINIPPQRIKRMGKKDNFWQAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ Q  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDKTIDLEDDSRFIEFYNLVFMQYNQDAEGNLTPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA+  +  ++Y   +    V+ +VI DH+R+   +IADGI  +N GRGY
Sbjct: 243 NYETDLIFPIIQAAADIAKIEYKKADEKTKVSLKVIGDHVRAVVHMIADGITASNTGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         +AYP + Q +  I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGAFINQVAEVAIALSETAYPNVRQRETPIKGELDREEAAFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            TL+RG  LL  +++ + K +   ++G  AFKLYDT+G PL++ Q+I    GL  +++  
Sbjct: 363 TTLERGEKLLSEIIAKVKKSKKKQISGVDAFKLYDTYGFPLELTQEIAEEEGLT-VNVEE 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F++ +++Q+ +++A    +   T +     L E    T+F+GY                 
Sbjct: 422 FDEEMKKQQDQSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGY----------------- 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V+ ++  G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G   G+
Sbjct: 464 ------TDAQSVAHVEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYLTGE 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DVQK++   FVH   VERG +    S+  TID   RR++  +H+ATHLL  AL
Sbjct: 518 TLVVRVEDVQKES-AFFVHFGRVERGTITVGDSVTATIDRACRRRVQAHHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   VSQ GS +T D LRFD    +P+T  EL+ IED +N+ IA+       IM  E
Sbjct: 577 KKIVDDSVSQAGSLVTFDRLRFDFNCPRPVTPEELQQIEDLINNWIAEAHEAHVSIMALE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  I+SES + 
Sbjct: 637 EAKAKGAVAMFGEKYGAEVRVLDVPG-----VSMELCGGTHVRNTAEIGLFKIMSESGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA+ G     +L  ++  +K L    KV    +  R+  +  E +  Q      
Sbjct: 692 AGIRRIEAVAGPAVLEYLNEREAVVKDLCDRFKVKPHEISDRITALQSELKSTQKQMESL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L +        +   + D   +   I  VD   L +  + LQ+K+    ++L  I  
Sbjct: 752 QQELAIAKSDQLLSNAESVGDFKVLVAEIEGVDPNGLMTAAERLQQKLGESAVILGSIPS 811

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K S++   +  ++   +  A       AK+ GGGGG GRP++AQ+GG + +K  +A+ 
Sbjct: 812 EGKVSLVAAFSPKVIKEKKLQAGKFIGEIAKICGGGGG-GRPNLAQAGGRDSSKLKEALE 870

Query: 891 GVASFL 896
                L
Sbjct: 871 SAKKQL 876


>gi|160902096|ref|YP_001567677.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|205830174|sp|A9BJE0|SYA_PETMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160359740|gb|ABX31354.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 876

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/912 (36%), Positives = 524/912 (57%), Gaps = 58/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL FF+K GH+ LPSSSLIP NDP L+FT +GMVPFK IF G+ +P Y  +T
Sbjct: 5   TSEEIRENFLYFFEKKGHKKLPSSSLIP-NDPQLLFTVAGMVPFKPIFWGKVEPTYTRIT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E  L  
Sbjct: 64  TCQKCLRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKKEAIKWAWEFLTEELGLPA 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGE 181
            +L+ +VY+ D+EAF +WK    +  +KI+R    +N+W    +TGPCGPCSEI+FD G 
Sbjct: 120 EKLWASVYETDDEAFNIWKDDIKIPENKILRFGKEENWWGPAGQTGPCGPCSEIYFDTGY 179

Query: 182 CIPGGL---PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       + +  R++EIWN+VF ++          LP+ +IDTG G ER+  V Q
Sbjct: 180 TENCPDQENCTPACDCGRFVEIWNIVFTEYYSDENGNLSPLPRKNIDTGAGFERICAVTQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K +N+D DLFK +I+  +++ G+K+  N    V+ +VI DH R+ +FLI++GI+P+NEG
Sbjct: 240 GKYDNFDSDLFKEIIEEIQRIFGVKFRVNKSKDVSIKVIADHSRAIAFLISEGIIPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ +  LL    P +  +L  +  +MG  YPELI+ + LI++    E+E
Sbjct: 300 RGYVLRRLIRRAVRHGALLEAKGPFLSSILETVIKKMGKIYPELIEKEALIKDISFMEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           +F +T+++G+  L+ ++ +L  +  L G +AF+LYDT+G PLD+ ++IL  +G+  +D  
Sbjct: 360 KFFETMEKGMERLNNIIQNLNNETTLPGKIAFELYDTYGFPLDLTKEILSEKGIE-VDEK 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + + +QR  AR+ S  +   T ++I+  + +    T+FIGYD L  ++         
Sbjct: 419 EFTELMNKQREMARSASGKVEYDTEKQIYKEIDKFLTPTEFIGYDKLSSTE--------- 469

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V+ I++   IV +A  G ++E+ F +TPFYAE GGQ+ D G    
Sbjct: 470 --------------EVQLIIKGNSIVPQAQEGDEIELFFPKTPFYAERGGQVSDKGVIYN 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    ++  V+     I  H   +++G ++    + L +D + R+    NH+ATHLLH A
Sbjct: 516 ETFEAEVIHVKPIRNEIISHLVKIKKGSIKNGERVFLKVDEKKRKATEKNHTATHLLHSA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ++G H+ Q GS + P+ LRFD TH +P+T  ++K IE  +N+ I + +PV   + + 
Sbjct: 576 LRKVIGEHIRQAGSYVAPERLRFDFTHYEPLTQDQIKQIEYLINEQIQKAIPVNIYLKSL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A +    AL   KY + VR+V +        S  LCGGTHVS+TGEI L  I+ ESSI
Sbjct: 636 EEAKSMDVIALFEEKYGEVVRIVEI-----DDFSRELCGGTHVSNTGEIGLFKILEESSI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G+RRIEAITG  + ++    +  + +L+  L  S+  +  ++E I +  +  +    +
Sbjct: 691 SSGVRRIEAITGFESLNYATELESIMTNLSKMLDSSRDQIPDKIEGILKTIKNQEKEIKQ 750

Query: 777 RKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  +++         I     +   +  ++     +  D L +K+  G+++L   S
Sbjct: 751 LQFQLATKNIERLAETPQIIEGEKVVVAQLENLEKDVHANTADILLQKLGRGVVILFNKS 810

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVL------GGGGGGGRPHMAQSGGPNGNKA 885
             ++ S+++ V++D   +F+A ++AR  A  L      G       P  AQ+GG   NK 
Sbjct: 811 NNEQVSLVVKVSKDTSKKFHAGNIARKIASYLGGGGGGG-------PTFAQAGGKYANKV 863

Query: 886 DQAIAGVASFLK 897
            + I  +  F++
Sbjct: 864 KEVIEHINDFME 875


>gi|237651172|ref|ZP_04525424.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
          Length = 872

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/915 (35%), Positives = 497/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I   E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              ++    +++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|253681881|ref|ZP_04862678.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561593|gb|EES91045.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 879

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/908 (37%), Positives = 511/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+  T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KDKLYVTIYLDDDEAYDIWTTKTDVDPKHIFRLGKEDNFWEHGV-GPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSVEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  + ++     +    Y  +    ++ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIRSILDKVANLANTTYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGIQGTFLHKIVNSVIENSGDAYPELKEKKDYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +  L K    +L+G+  FKLYDT+G PL++ ++IL  + +  +D+
Sbjct: 359 FAETIDSGMEILKEYIEELEKENKNVLSGEKVFKLYDTYGFPLELTEEILEEKNIT-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++ QR RARA         T+            T+F GY  L            
Sbjct: 418 DGFNEEMKVQRERARAARSESTYMGTDVKVIDTIPSEIETKFDGYKNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S +K I++  +  +   +G+K  +V D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSKIKVIIKNDDFADCIKAGEKGIIVTDKTPFYAEMGGQIGDKGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ + +    G  +H   V  G ++    ++L +D   R  +S NHS THLLH 
Sbjct: 515 ADGFVAKVENCKNNIGGKIIHFVEVIEGNIKLGDEVLLEVDRVRRDNVSKNHSTTHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS +  D LRFD TH + +T  EL  +ED VN+II++   V T  M 
Sbjct: 575 ALREVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNNIISKVYEVETNEMT 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY D+VRVV +     G  S  LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEARQSGAMALFDEKYGDKVRVVKI-----GNFSVELCGGTHISNIGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AGIRRIEA+TG +A   +  +   LK +A  LK S+ +++ R+ +   E ++ +   A
Sbjct: 690 IAAGIRRIEAVTGTKALEFIKDKSNLLKEVAELLKCSEKDILNRLNQQSLELKEKEKEIA 749

Query: 776 --KRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED   + + ++  +   ++   +VD + L+++ D ++ K+ SG+++L G 
Sbjct: 750 SLKSKLASGSEDEILNNVKEIKGVKLAVANLKDVDGEALRNLGDKIKNKLGSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D++ +  +   + R  AK+ GGGGG GRP MAQ+GG    K   A+
Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGGG-GRPDMAQAGGRLPEKLKDAM 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NAVENIME 875


>gi|319939471|ref|ZP_08013831.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811457|gb|EFW07752.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 872

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/915 (35%), Positives = 495/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D +++  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDHDSYNRWISV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPEHQGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G      ++  L +    +++G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQSIVEELKEKGQSVISGTDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +         +S+ + AIV   + VEE  SG K  +VF +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITAESHFNYEKEALSAKLVAIVADDKEVEEVTSG-KAYLVFAETPFYAEMGGQVA 508

Query: 530 DTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    +   +  Q+ DVQK   G  +H   V    L       L ID+  R ++  NH
Sbjct: 509 DHGQIFDLAGNLVAQVVDVQKAPNGQPLHTVEVV-APLALNQEYKLEIDHNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS    + LRFD TH + +T+ EL+ IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQEVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTH+ +T EI L
Sbjct: 628 DIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHMKNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK++A+ LKV Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDALKAIATTLKVPQMKEVSRKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----IHAGNLIKELAPIVA-GRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
                + +  V   L
Sbjct: 858 QAAIQELLTAVPEKL 872


>gi|210622569|ref|ZP_03293251.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275]
 gi|210154152|gb|EEA85158.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275]
          Length = 911

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/908 (37%), Positives = 530/908 (58%), Gaps = 49/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR+ FLEFF+   H +  S  L+P ND +L+  N+GM P KN F+G E P    +
Sbjct: 37  MGLNEIRSKFLEFFKTKDHYVGASYPLVPNNDKSLLLINAGMAPLKNYFSGVEVPPKNRM 96

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D++NVG T RH TFFEMLGNFSFG YFK  ++   W+  TK  ++ 
Sbjct: 97  ATCQKCIRTG----DIENVGVTARHATFFEMLGNFSFGDYFKRESLAWGWEFATKWLNIP 152

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++++TVY++D+EAF +W K  G   ++I+R+  +DNFW +   GPCGPCSEI+FD+GE
Sbjct: 153 EEKIWVTVYEKDDEAFDIWSKEMGFPEERIVRLGKDDNFWEIGL-GPCGPCSEIYFDRGE 211

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P      + +R++E WN VF QF ++       L   +IDTGMGLER+A ++Q 
Sbjct: 212 EYGCDSPDCKPGCDCDRFLEFWNHVFTQFSKEEDGSYSELENKNIDTGMGLERIACIMQG 271

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D    +++A  +V G++Y  +  N  + R+I DH+R+ SFLIADG+LP+NEGR
Sbjct: 272 VDNIFEVDTIHSVLEAVSKVAGVEYGKDKANDKSIRIITDHIRAVSFLIADGVLPSNEGR 331

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RRA  + +LLG     +  L+  +    G AYPEL++ +  I++ ++ E+E+
Sbjct: 332 GYILRRLLRRAARHGKLLGIKGTFLNGLVDEVIKVSGDAYPELVEKEDYIKKVIKIEEEK 391

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D+G+ +L+     L K    +L+G++AFKLYDT+G PLD+  +IL   GL+ ++ 
Sbjct: 392 FNETIDQGMEMLNSYKEELKKEGKTVLSGEIAFKLYDTYGFPLDLTVEILREEGLS-VNE 450

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ +E+Q+ RAR     +   + ++   + KE+   ++F+GY  L G          
Sbjct: 451 EEFSEEMEKQKERARTARGNMDGESWKEDPLA-KEENVESEFVGYVELTG---------- 499

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V AIV+  EIVE A  G+ V VV D+T FY E GGQ GD G   
Sbjct: 500 -------------EGKVLAIVEDSEIVESASEGKDVVVVLDKTNFYPEGGGQAGDCGVLK 546

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D   + + + +K   G   H   V  G L+    L   +D +NR   S NH+ATHLLH 
Sbjct: 547 NDNCAVAVKNTKKGPAGSIKHFGTVVAGELKAGDVLTCEVDRENRMACSRNHTATHLLHK 606

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H +Q GS +T D LRFD TH + +T  ELK+IE+ VN+ I     VV   M+
Sbjct: 607 ALKEVLGDHANQAGSLVTADRLRFDFTHFEAVTKEELKTIEEKVNNAIFNAYDVVAETMD 666

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A A GAAAL G KY + VRVVS+     G +S  LCGG H+S+T +  +  I+SE  
Sbjct: 667 INAAKAKGAAALFGEKYGNEVRVVSM-----GDYSMELCGGAHISNTAQAGMFKIISEGG 721

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+    ++  +DE +  + + +K  +  ++ RVE + EE + L+    
Sbjct: 722 VAAGVRRIEAVTGKAVYEYMNKKDELIAKVCATIKAKEDGLLHRVENVLEENKNLEKELH 781

Query: 776 KRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K Q++++          ++  V+ +++    +D   L+   D L+ K++SG+++L  +
Sbjct: 782 NLKTQISMQSADSALDSKVEVKGVSLVTNKYENMDMNTLRDTADNLRDKMESGVVVLANV 841

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K + ++  T+D++++  ++ ++ R  AK+ GG GG GRP+MAQ+G     K D+A+
Sbjct: 842 A-DGKVNFVVTATKDVIEKGVHSGNIVREVAKIAGGKGG-GRPNMAQAGATEPAKVDEAL 899

Query: 890 AGVASFLK 897
                 ++
Sbjct: 900 NYAKEVIE 907


>gi|331269730|ref|YP_004396222.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329126280|gb|AEB76225.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 879

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/908 (37%), Positives = 513/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+  T+   + 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KDKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHGV-GPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNKLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++     +    Y  +    ++ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIKSILDKVANLANTSYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + RLLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGRLLGIQGTFLHKIVDSVVENSGDAYPELKEKKDYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   +  L K   +IL+G+  FKLYDT+G PL++ ++IL  + +  +D+
Sbjct: 359 FSETIDSGMEILKEYIEELEKENKKILSGEKVFKLYDTYGFPLELTEEILEEKNMT-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++ QR RARA         T+            T+F GY+ L            
Sbjct: 418 DGFNKEMKVQRERARAARSESTYMGTDVKVIDTIPSEIETKFDGYNNLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S +K I++  +  +    G+K  +V D+TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSQIKVIIKNDDFADCIKKGEKGIIVTDKTPFYAEMGGQIGDKGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ + +K   G  +H   V  G +     ++L +D + R  +S NHS THLLH 
Sbjct: 515 ADGFVAKVENCKKNIGGKIIHFVEVVEGSINLGNEVLLEVDKRRRDNVSKNHSTTHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS +  D LRFD TH + +T  EL  +ED VND+I++   V T  M 
Sbjct: 575 ALRKVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNDVISKVYEVETNEMT 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY D+VRVV +     G  S  LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEARQSGAMALFDEKYGDKVRVVKM-----GNFSVELCGGTHISNIGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I AGIRRIEA+TG +A   +  +   L+ +A  LK S+ ++V R+ +   E ++ +   A
Sbjct: 690 IAAGIRRIEAVTGTKALEFMKDKSNLLREVAEMLKCSEKDIVNRLNQQNLELKEKEKEIA 749

Query: 776 --KRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED   + I ++  +   ++   +VD + L+++ D ++ K+ SG+++L G 
Sbjct: 750 ALKSKLASGSEDEILNNIKEIKGIKLAVADLKDVDGEALRNLGDKIKNKLGSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D++ +  +   + R  AK+ GGGGG GRP MAQ+GG    K   A+
Sbjct: 809 EVEGKVQFIAMASKDVVSKGVHCGTIVREIAKIAGGGGG-GRPDMAQAGGRLPEKLKDAM 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NAVENIME 875


>gi|148993058|ref|ZP_01822652.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|168489547|ref|ZP_02713746.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|147928259|gb|EDK79276.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|183571933|gb|EDT92461.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|332073690|gb|EGI84169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
          Length = 872

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/915 (36%), Positives = 500/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+ +  +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDSSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DYGQILDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +              +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|315924764|ref|ZP_07920981.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621663|gb|EFV01627.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 882

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/910 (37%), Positives = 510/910 (56%), Gaps = 53/910 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +L FF+  GH  L S SL+P ND +L+  NSGM P K  FTG E P  + VTT
Sbjct: 6   LNEIRERYLAFFESKGHLRLKSFSLVPHNDKSLLLINSGMAPMKAYFTGDEVPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+DNVG+T RH TFFEM+GNFSFG YFK   I  AW+ +T +  +D  
Sbjct: 66  CQKCIRT----PDIDNVGKTARHGTFFEMMGNFSFGDYFKPEVIPWAWEFITDKMGMDPD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           ++Y+T+Y +D+ A  LW+ + G++ D I+R+   DNFW    TGPCGPCSEIF+D+GE  
Sbjct: 122 KIYVTIYLDDDTAHDLWRSV-GVAEDHIVRLGKEDNFWEHG-TGPCGPCSEIFYDRGEAY 179

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R++E WNLVF QF++        L   +IDTGMGLERMAT+LQ   
Sbjct: 180 GCGKPTCGPGCDCDRFVEFWNLVFTQFDRDENDRYTPLDHPNIDTGMGLERMATILQGVD 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N +++D  +H++     + G  Y  +    V+ RVI DH+RS +F+I DGI+P+NEGRGY
Sbjct: 240 NIFEVDTIRHVLDYICSLCGEHYGDDAEKDVSIRVITDHIRSVTFMIGDGIMPSNEGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA  + RLLG     +  +   +    G AYPEL + +  I++ ++ E+ERF 
Sbjct: 300 VLRRILRRAARHGRLLGIKGTFLHDVAKEVVAVSGDAYPELKEKQKTIQKIIQIEEERFD 359

Query: 360 KTLDRGLVLLDGVLSHLG----KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            T+D+GL  L+ +L  L      + I +G  AFKLYDT G P D+ ++I+  RG A I  
Sbjct: 360 ATIDQGLSQLNAMLEKLEAEAPGERIFSGAEAFKLYDTFGFPFDLTREIVEERGFA-IPY 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A++ QR RARA      +       F+         F+GYD L+           
Sbjct: 419 EDFEKAMDAQRERARAARAESDTAVWADDPFNPLGADAVDAFVGYDALKAD--------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           +  ++    +V+EA +G  V V+ DQT FYA++GGQ+GD+G   
Sbjct: 470 --------------GKILGLIVNDTLVDEAKAGDNVLVLLDQTVFYAQSGGQVGDSGVIE 515

Query: 536 GDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 R+ ++D +  +    +H+  VE G  +T  +++  ++  +R   + NH+ATH+L
Sbjct: 516 SADGTARIAVSDCRYGSLKRHIHYGKVESGSFKTGQTVISEVNKADRMATARNHTATHML 575

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL  +LG HV Q GS ++PD LRFD  H +P+T+ E+  +E  VN +I + +PV    
Sbjct: 576 QKALKQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTAEEIARVETIVNQVILEAMPVTIFE 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + ++A   GA AL G KY + VRVV V     G +S  LCGGTH+++  +  +  I+SE
Sbjct: 636 TDIDEAKKLGAMALFGEKYGNIVRVVRV-----GDYSIELCGGTHLTNAAQAGMFKILSE 690

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771
           S + AGIRRIEA TG      +   +  L+ ++  +K +   +V ++ E+ E+ +    +
Sbjct: 691 SGVAAGIRRIEAATGMNTYHEMARAEATLRKVSGMVKANPAQLVEKIAELEEQGKAQDRE 750

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLV 828
           +   K++   +        I ++  +   I+ VD     EL+ + D L+ K+ SG I ++
Sbjct: 751 IAALKQQQAGSAAGEIAQNIVEIAGVKAAIAGVDGMEMDELRELSDRLKDKMGSG-IAVI 809

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           G     K + +   T+DL+ R F+A +L R  A+V GGGGG GRP MAQ+GG    K   
Sbjct: 810 GTVNGGKINFIATATKDLVKRGFHAGNLIREVAQVAGGGGG-GRPDMAQAGGKRPEKMAD 868

Query: 888 AIAGVASFLK 897
           A+      +K
Sbjct: 869 ALEKAKDLIK 878


>gi|167764982|ref|ZP_02437103.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC
           43183]
 gi|167697651|gb|EDS14230.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC
           43183]
          Length = 873

 Score =  850 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 500/919 (54%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   +TG  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMTGATYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------FQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E   +  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKE-NNLPIH--ITKKLPEHLEAPFMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDAFQDTMRDLKALFNNAP-DLSGTIRK 732

Query: 763 IWEEY----RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE     ++++    +++ QL  + L    ++     +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEVNGTKVIKFCAAMIPADTVKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 852 AGGKNPDGLNAAVDKVLEL 870


>gi|328957192|ref|YP_004374578.1| alanine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673516|gb|AEB29562.1| alanine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 882

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/916 (37%), Positives = 519/916 (56%), Gaps = 62/916 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF+  GH++ PS+SL+P  DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT  K   L
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY ED EA  +WK+  GL+ D I+     DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPEKLYVTVYPEDTEAKNIWKEKIGLTDDHIV--DVADNFWDIGA-GPSGPDSEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ER++EIWNLVF +F  +       LP  +IDTGMGLER+ +
Sbjct: 178 EAFNDLPENDPENYPGGENERWLEIWNLVFSEFNHKPDGTYEPLPNKNIDTGMGLERVVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           +LQ+   N++ DLF  +I+  E ++  K  G    + ++ +VI DH+R+ SF I DG LP
Sbjct: 238 ILQDAPTNFETDLFMPIIKKVESLSKTKKYGENPTDDISFKVIADHVRAVSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  E  M  L+P + + M S YPE+++ +  I + ++
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDEAFMYKLVPIVGSIMDSFYPEILEQEDFIVKVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+  ++ L    +  + G   FKLYDT+G P+++ ++     G 
Sbjct: 358 NEEERFHETINDGLTILNERITELKAKGETSIAGSDIFKLYDTYGFPVELTEEYAEDEGF 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +  QR RARA   G  S   +   FS  ++   + F+GY+         
Sbjct: 418 K-VDHEGFEKEMTAQRDRARAARSGEKSMGVQTRLFSDLKE--ESLFVGYNKT------- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                ++ I    E++  A  G++V ++FDQTPFYAE GGQ+ D
Sbjct: 468 ----------------TEMGTLEVIATDEELLNSAQPGERVRLIFDQTPFYAEMGGQVAD 511

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G       +L  ++ +V+K   G  +H   V   +L    + VL +D   R +++ NH+
Sbjct: 512 KGVVTDTKGKLIAKVVEVKKAPAGQPLHIVEVVE-VLTVGETYVLEVDKSLRNKITRNHT 570

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  ILG H +Q GS +TP+ LRFD TH   +T  EL  +E  VN+ I +++ 
Sbjct: 571 ATHLLHQALKDILGEHANQAGSLVTPNHLRFDFTHFGQVTRDELDQMEQIVNEKIWESIS 630

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT   +   A   GA AL G KY D VRVV+V     G +S  LCGG HVS+T EI + 
Sbjct: 631 VVTVETDIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEIGIF 685

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A + L  + ++L  +A+ +K  Q  +V+ +V+++  E 
Sbjct: 686 KIVSESGIGAGVRRIEAVTSEAAYTLLQTEQKRLIEVAAVVKAQQTQDVITKVQQLQTEL 745

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++ Q  +   + +L  +       +  ++  V  +S  +   D  +L+ + D  ++   S
Sbjct: 746 KEAQKENESLQAKLANDQAGDIFKNIQEVNGVTIVSAEVDVKDMNQLRQLADQWKQNAVS 805

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            ++ L G S + K ++L  V  D + + F A DL +  A ++GGGGG GRP MAQ+GG N
Sbjct: 806 NVLAL-GFSNDGKVNLLTAVDADTIKKGFKAGDLIKTIAPLVGGGGG-GRPDMAQAGGKN 863

Query: 882 GNKADQAIAGVASFLK 897
                 A+A VA ++K
Sbjct: 864 PAGLSDALAKVAEWVK 879


>gi|168186831|ref|ZP_02621466.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169295233|gb|EDS77366.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 879

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/908 (37%), Positives = 522/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +L+FF+  GH  LPS S++P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D++NVG+T+RH TFFEM+GNFSFG YFK   I  AW+  T+   L 
Sbjct: 64  TTCQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179
           + +LY+T+Y +D+EA+ +W   + +    I R+   DNFW     GPCGPCSEI F  D 
Sbjct: 120 KDKLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHGV-GPCGPCSEIHFYKDN 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE           + +R +E WNLVF QF++        L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQG 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++     +   +Y  +    V+ R+I DH+RS S +I+D +LP+NEGR
Sbjct: 239 VETIFEVDTIKSILDKVATLANTEYGKDEIKDVSLRIITDHVRSVSVMISDEVLPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + +LLG     +  ++ ++    G AYPEL + K  I++ +  E+ER
Sbjct: 299 GYVLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKEYIKKVISIEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L   + +L ++  ++L+G+  FKLYDT+G PL++ ++IL  +G+  +D+
Sbjct: 359 FAETIDSGMEILKQYIENLEENNQKVLSGEKVFKLYDTYGFPLELTEEILEEKGII-VDM 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RARA         T+            T F GY+ L            
Sbjct: 418 DGFNKEMKEQRERARAARSESTYMGTDVKILDTIPSEIETVFDGYENLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S VK I++  + V+    G+K  +V ++TPFYAE GGQ+GD G   
Sbjct: 467 ------------LQSKVKIIIKDDDFVDCIKKGEKGIIVTERTPFYAEMGGQIGDRGTIS 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG   ++ D +    G  VH   V  G ++ E  ++L +D + R  +  NHSATHLLH 
Sbjct: 515 ADGFIAKVQDCKNNIGGKIVHFVEVIEGNIKLEDEVLLEVDRRRRENVGKNHSATHLLHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  D LRFD TH + +T  ELK +ED VN+ I     VVT+ M+
Sbjct: 575 ALRKVIGEHVHQSGSYVDEDKLRFDFTHFESLTDEELKEVEDLVNNTIENVYDVVTKEMS 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A  SGA AL   KY DRVRVV +     G  S+ LCGGTH+S+ G+I L  IVSES 
Sbjct: 635 IEEARNSGAMALFDEKYGDRVRVVKM-----GEFSTELCGGTHISNVGKIGLFKIVSESG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLI 773
           I AG RRIEA+TG +A   +  + + L+ +++ LK S+ +++ R+ +   E   +  ++ 
Sbjct: 690 IAAGTRRIEAVTGHKALEFIEHKSDLLRQISNMLKCSEKDIINRLNQQSAELKDKDKEIS 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  VN     + +VD + L+++ D ++ KI+SG+++L G 
Sbjct: 750 VLKSKLASGSEDDILKNVKEIKGVNLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GS 808

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E K   + + ++D + R  +  ++ R  AK+ GGGGG GRP MAQ+GG    K + AI
Sbjct: 809 EVEGKVQFIAMASKDAVSRGVHCGNIVREIAKIAGGGGG-GRPDMAQAGGRLPEKLNDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 NEVENIME 875


>gi|257059315|ref|YP_003137203.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|256589481|gb|ACV00368.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 879

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/904 (37%), Positives = 520/904 (57%), Gaps = 48/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P Y   T
Sbjct: 9   TGAQIRDKFLQFYASKHHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKNPDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  +W+L T+ F+L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ED+EAF++W+   G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 ENIVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y   +    V+ +VI DH+RS   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIETAAKIAGINYKNTDKKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S YP + + +  I+  L+ E+ RF 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +++   K+  ++G  AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 363 ETLERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ R++A    +   T +     L E    T+F+GY   +               
Sbjct: 422 AAMKEQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYSSPQ--------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + V+A++  G+ VE A +G +V+++ DQTPFY E+GGQ+GD G   GD +
Sbjct: 466 --------IMAKVQAVLVDGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDNL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV+K++ GIFVH   VERGI+  E ++  TID   RR++  +H+ATHLL  AL  
Sbjct: 518 VVRIEDVKKES-GIFVHFGRVERGIIAVENTVTATIDRACRRRVQAHHTATHLLQAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + ITSAEL+ IE  +N  IA+       IM+ E A
Sbjct: 577 VVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEKA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY+  VRV+ V        S  LCGGTHV +T EI L  I+SES I +G
Sbjct: 637 KAKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  + +L   K+
Sbjct: 692 VRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVKQ 751

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +   D    +   V     ++SE+   D K L++  + LQ+K+    ++L  +  E 
Sbjct: 752 ELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSED 811

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K  ++   ++ +    +  A       AK+ GGGGG GRP++AQ+GG + NK  +A+   
Sbjct: 812 KVVLVAAFSDKVHKEKQLMAGKFIGEIAKICGGGGG-GRPNLAQAGGRDANKLPEALLIA 870

Query: 893 ASFL 896
              L
Sbjct: 871 KQQL 874


>gi|289432002|ref|YP_003461875.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|288945722|gb|ADC73419.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 876

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/905 (37%), Positives = 514/905 (56%), Gaps = 47/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   +R  +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK  + G  KP    + 
Sbjct: 8   SSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGMAKPENPRMA 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC R      D+++VG    H T FEMLGNFS G YFK+ AI  AW+ +T+  ++  
Sbjct: 68  SCQKCFRT----TDIESVG-DASHLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPA 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGE 181
            RL+ITVY +D+EA  LW K  G+  ++I+R+   DNFW    ++GPCGPCSE+ +D G+
Sbjct: 123 ERLWITVYLDDDEAIALW-KEQGVPENRIVRLDAADNFWGPAGDSGPCGPCSEVHYDFGQ 181

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G    +   +  R+ EIWNLVF+QF Q    +R  LP  SIDTGMGLER+  ++Q 
Sbjct: 182 ETGCGKADCNPSCKCGRFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQS 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K N Y+ D+F  +++ +  ++G KY  +       R++ +H R  +FLIADG++P   GR
Sbjct: 242 KKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKAGR 301

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + R LG  +P ++ +  A+ T M   YPEL + +  + E + SE+ R
Sbjct: 302 GYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVITRMSGIYPELKKRQTYVLEMIASEEAR 361

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL  GL LL+ ++    K   ++G  AFKLYDT+G P+++  +I   +GL+ +D+  
Sbjct: 362 FSETLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDLDG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E QR++AR+                     G T F+GY+L R             
Sbjct: 420 FESEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGGKTCFVGYELAR------------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S +  I+ +G  V+    G +  +V D++PFYAE GGQ+GDTG  I  
Sbjct: 467 ----------QKSTIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G R ++ +      G+F+H   V  G L+   +    I+ + RR ++ NH+ATH+L  AL
Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQTAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q GS +TPD LRFD +H KP++  E++ +E+ VND I +NLPV    M   
Sbjct: 577 REVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMAYR 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A+  G  AL G KY DRVRV+ V        S+ LCGGTHV+++GEI L  I+SESS+ 
Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRPAV---SAELCGGTHVTASGEIALFKIMSESSVG 693

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG+ A + +  Q + L  L+  L+ +      ++ E+ EE   L+      
Sbjct: 694 AGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQNL 753

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + Q++  +             V  +   ++ V++  L+   D L+ K+ SG+I+L G   
Sbjct: 754 ERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVT 812

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K   L +VT DL+ + ++A ++ +  +++ GGGGG G+P+MAQ GG + +K D+A+  
Sbjct: 813 EDKPFFLCMVTPDLIAKGYHAGNIVKKLSQIAGGGGG-GKPNMAQGGGRDKSKLDEALQA 871

Query: 892 VASFL 896
           V   +
Sbjct: 872 VKGMI 876


>gi|302550143|ref|ZP_07302485.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467761|gb|EFL30854.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 890

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/923 (36%), Positives = 505/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+ +         +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYVRGEGTGKDSFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG++Y    ++ V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVINKATELTGVRYGDAHDSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDTVIEMMGQQYPELITDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVTDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G      +  + ++ GAT FIGY     
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADQAGATDFIGYTDTES 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D G  ++I D QK   G++VH  +V+ G +        +ID + R  ++
Sbjct: 511 GQIGDTGKIKVDTGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVQAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGIAVVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L  ++  K  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRPAVVALFAVANGKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N      A+  V   + +
Sbjct: 865 QGGGQNPAAVGDAVDAVERLVAE 887


>gi|319901112|ref|YP_004160840.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
 gi|319416143|gb|ADV43254.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108]
          Length = 872

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/918 (37%), Positives = 502/918 (54%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHVDSRTEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQYNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIADMAGTTYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG +YPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYRLLPVLIENMGGSYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEVSGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   D+  FN  +E+Q+SRAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DLNEFNAEMEQQKSRARNA-----AAIETGDWITLKE--GTTEFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + + D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIDVIDTKKE-NNLPIH--ITKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ IE   N  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEELRQIEHIANAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R M  EDA   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRDMPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    +    + L+ L +    +  ++ G + +
Sbjct: 674 GNIGMVKIVSESSVAAGVRRIEAYTGARVEEMMDTIQDTLRDLKALFNNAP-DLAGTIHK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    ++ +  ++D   + I +VN +  I   + + ++ +K++   L+ 
Sbjct: 733 YIEENAGLKKQVEDFMKEKESQLKDKLMNSIQEVNGVKVIKFCAPLPAETVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 QITEDLFFVAGTEYEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 852 GGKNVDGLNAAVDKVIEL 869


>gi|322391767|ref|ZP_08065232.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321145247|gb|EFX40643.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 872

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 497/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G  KP    +T
Sbjct: 5   SSAQIRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWVEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPDHIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L      +++G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKAKGQSVIDGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  ID   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-IDRDGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITVESHFNYNASQLSSKLVAIVADNTEVEAVSEG-TASLIFAETPFYAEMGGQVA 508

Query: 530 DTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  +     +   +TDVQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDAVGNVVANVTDVQKAPNGQPLHTVEVL-APLALNQEYTLAIDTNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T  EL++IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV++T EI L
Sbjct: 628 AIKTIETDIDTAKEMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVANTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK  A+ LK  Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYRQQEDALKVAAAALKAPQLKEVPHKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K  
Sbjct: 743 VKQLQKENAELKEKAAAVAAGDVFKHVQEANGHSFIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAIGDKVNVLVASKTKD----VHAGNVVKELASIV-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVADKL 872


>gi|81428001|ref|YP_395000.1| alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123564683|sp|Q38YN9|SYA_LACSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78609642|emb|CAI54688.1| Alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 878

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/917 (37%), Positives = 505/917 (55%), Gaps = 67/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF++ GH++ PS+SLIP  DPTL++ NSG+   K  F G+  P    +T
Sbjct: 5   TSAQVRQMFLDFFKEKGHDVEPSASLIPDEDPTLLWINSGVATLKKYFDGRVVPNNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K   L
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFKEDAIPWAWEFLTSDKWIGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D++A ++W +  GL+ D+II +   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPEKLYVTVYPKDKDAHRIWHEKVGLAEDRIIEV--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E ERY+E+WN+VF +F      E    P  +IDTGMGLER+
Sbjct: 178 QSFNNVSEDDPENYPGG--ENERYLEVWNIVFSEFNHLPNGEYVEQPHKNIDTGMGLERL 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290
            +V+QE   N++ DLF  LI+A+  ++  K  G    + ++ ++I DH R+ +F I DG 
Sbjct: 236 VSVIQEAPTNFETDLFMPLIEATAAMSDHKQYGQNAADDISFKIIADHARAVTFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +PANEGRGYVLRR++RRA+   + LG  +  M  L+P +   M S YP++++ K  IE+ 
Sbjct: 296 MPANEGRGYVLRRLIRRAILNGKKLGINDAFMYKLVPIVGEIMHSYYPDVLEQKDFIEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +RSE++RF +TL+ GL LL+  +       +  +NG  AFKL+DT G P+++  +     
Sbjct: 356 IRSEEDRFRETLNDGLRLLNQTIEAVKAENETEINGADAFKLFDTFGFPIELTTEYAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F + +  Q++RAR A S     G+  ++  ++K K   ++F GY  L    
Sbjct: 416 GLT-VDQAGFEKEMAAQKARARNARSDEQSMGSQNEVLLNIKTK---SEFTGYSELET-- 469

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S +  I+Q     E   +G   ++VF+ TPFYAE GGQ
Sbjct: 470 ---------------------ESRLADIIQDNAEQESVTTG-VAQLVFEATPFYAEMGGQ 507

Query: 528 LGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G    +   +  ++TDVQ    G  +H   V + ++   +   L++D   R  +  
Sbjct: 508 VADQGIIKNLAGQVVAEVTDVQYAPNGQPLHTVKVLKEMIS-GVHYTLSVDPTFRGGVVK 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L  +E  VND I  
Sbjct: 567 NHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNLGQVTPDQLAEVEQIVNDKIWA 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LPV T   + E A   GA AL   KY   VRVV +     G +S  LCGGTH ++T ++
Sbjct: 627 ALPVNTVETDIETAKQMGAIALFTEKYGKTVRVVQI-----GDYSMELCGGTHANNTSDL 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  I SES I AG RRIEA+T + A  +L  +   L  LAS LKV+Q  ++  +++++ 
Sbjct: 682 GLFKITSESGIGAGTRRIEAVTSKAAFKYLNDKQVLLNELASELKVAQTKDLPKKIQQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  Q  + + K +   E       +  +      ++         EL+ + D  Q+K
Sbjct: 742 ADLKAEQKENEQLKAKFAQEQAGNVFENVVEAGQWRLVAADAKVAGMNELRQLADQWQQK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++L  ++ +K + ++ V  + +     A DL +  A ++GGGGG GRP MAQ+GG
Sbjct: 802 QISDVLVLATVAGDKVSLIVAVAPDAIKAGIKAGDLIKQIAPLVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFL 896
            N      A+A    FL
Sbjct: 861 KNPAGIPDALAAAKEFL 877


>gi|329961902|ref|ZP_08299915.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328531125|gb|EGF57975.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 873

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 497/919 (54%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRESFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  N    +  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTTYGNNQQQDIAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELIAQKD 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LL+  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETGILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETVEVIDTKKE-NNLPIH--ITKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSCTHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AGIRRIEA TG R    L    + ++ L +    +  ++   + +
Sbjct: 674 GNIGMVKIVSESSVAAGIRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSAAIRK 732

Query: 763 IWEEY----RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E     ++++    +++ QL  + L    +I  V  +    + V +  +K++   L+
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKEKLLQSVQEINGVKVIKFCSAMVPADAVKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A  L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGALVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 852 AGGKNPDGIKAAVDKVIEL 870


>gi|315221813|ref|ZP_07863725.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315189046|gb|EFU22749.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 872

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 496/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT    FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D +++  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDHDSYNRWISV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPEHQGLRLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKNYNPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  +P +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINDPFLYKLVPTVGKIMESYYPEVLEKQDFIEKII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G      ++  L      +++G   FKLYDT+G P+++ Q+I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQSIVEELKAKGQSVISGTDVFKLYDTYGFPVELTQEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 MT-VDREGFETAMKEQQERARASVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +         +S+ + AIV   E VEE  +G K  +VF +TPFYAE GGQ+ 
Sbjct: 450 ETLQNITAESHFNYEKEALSAKLVAIVAADEEVEEVSTG-KAYLVFSETPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G       +L  Q+ DVQK   G  +H   V    L       L ID+  R ++  NH
Sbjct: 509 DHGHIFDSEGQLIAQVVDVQKAPNGQPLHTVEVV-APLTLNQEYKLEIDHNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG H +Q GS    + LRFD TH + +T+ EL+ IE  VN+ I + +
Sbjct: 568 TATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQEVNEKIWEAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTH+ +T EI L
Sbjct: 628 DIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHMKNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK++A+ LKV Q   V  +VE + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYREEEDALKAIATTLKVPQMKEVSRKVEALQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +           + H++   +F++  +S  D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAASGEIFKNVHEVNGCSFIASQVSVSDAGALRTFADTWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDVLVLVAAISEKVNVLVASKTKD----IHAGNLIKELAPIVN-GRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
                + +A V   L
Sbjct: 858 QAAIQELLAAVPEKL 872


>gi|119356090|ref|YP_910734.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|205830021|sp|A1BD33|SYA_CHLPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119353439|gb|ABL64310.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 888

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/924 (36%), Positives = 501/924 (54%), Gaps = 68/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MNSREIRQSFLDFFDRKGHTIVRSAPVIPLDDPTLLFTNAGMNQFKDVFLDKGTRPYVRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWHLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE++ LW++ + +  D II+    DNFW M ETGPCGPCSEI  D  E
Sbjct: 121 KERLYATVYYDDEESYLLWQEETDIPHDHIIKFDEKDNFWEMGETGPCGPCSEIHIDLTE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G P  +    R IE+WNLVF+Q+ +Q       LP+  +DTGMG ER+  V+Q K 
Sbjct: 181 D-GSGKPLVNAGDYRVIELWNLVFIQYNRQADGRLEPLPQKHVDTGMGFERVCAVMQGKA 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F+ L     ++TG+ Y    +  + +  RV+ DH R+ +F + DG +P+NEGR
Sbjct: 240 SNYDTDVFRPLFDRITEITGVSYNASLDDPSDIAMRVLADHARTLTFALTDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y++ LG +EPL+  L+  L   MG  +PEL + +  +   +R+E+E 
Sbjct: 300 GYVLRRILRRALRYSKTLGCSEPLLYRLVETLAASMGDVFPELRKQQQAVSRIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ + + +++ +      +++GD AF+LYDT G PLD+ + +    G   +D 
Sbjct: 360 FLATLDRGIEIFNELIAAVRSRGTTVVSGDDAFRLYDTFGFPLDLTRLMAAEAGFE-VDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ ++EQ++RAR           ++  ++       + F GY  L            
Sbjct: 419 EGFDRCMKEQKTRARQDRRDKQHLKGDEGEWTWFSAERTSVFTGYHSLE----------- 467

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S    +I              ++ VV D+TPFYAE+GGQ GD G   
Sbjct: 468 ----------ELASITGVSIFSD-----------RLLVVLDRTPFYAESGGQCGDRGWIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIV----ERGILRTEM--------SLVLTIDYQNRRQL 583
               RL+++D +K  + I      V      G +            +   ++D  +R+  
Sbjct: 507 TAAYRLRVSDTRKDGDMIVHLVTEVRDSVSDGAISPADLSFDEGKLACRASVDRSDRQGT 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL   LG HV Q GS ++ + LRFD +H   +TS EL  +E  VN+ I
Sbjct: 567 ERNHTATHLLHAALRRTLGQHVQQKGSFVSSERLRFDFSHFARLTSEELAIVESEVNEQI 626

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
               PVV    +  ++AIA GA A  G KY DRVRVV +        S  LCGGTHV S 
Sbjct: 627 RSAEPVVKHQDIPYDEAIARGALAFFGDKYADRVRVVEIAG-----LSVELCGGTHVDSI 681

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVE 761
           G+I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK+     V+GR+ 
Sbjct: 682 GQIGLFKIVSESSVASGVRRIEALTGKAAEVLLWKEYRELQDIRQMLKLKADEEVIGRIA 741

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
           E+ +  ++L+      + +     L         +  + FM+  +  VD   L+  + AL
Sbjct: 742 ELADSKKELEKQLQVYRTEALSGILQRSLDAAESVGSIRFMTLRLEHVDQDSLRQAVLAL 801

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++K  +   +L    ++ K S+     E  +     +A  L R +A  + GG GGG+P  
Sbjct: 802 REKDPASTGLLC-TEEDGKVSLTAFAGERAVGEFGLDAGKLVREAAAFVRGG-GGGKPEF 859

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           A +GG +     +A    A+ +++
Sbjct: 860 ATAGGKDPEGIQKAFDSFAASVRE 883


>gi|319957309|ref|YP_004168572.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319419713|gb|ADV46823.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 859

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/897 (38%), Positives = 517/897 (57%), Gaps = 54/897 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +L++F + GH ++PSS L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 2   DIRKMYLDYFAQRGHRVVPSSPLVP-DDPTLLFTNAGMVQFKSIFTGEAPIPNPPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T  +   L  
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFVTGEEYLALPV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181
            ++++TV++ D+EA+++WK+   ++ ++I R    DNFW M +TGPCGPCSEIF+DQG E
Sbjct: 121 EKIWVTVHESDDEAYEIWKE--HIAEERIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGAE 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G       +G+R++EIWNLVFMQ+E+    E   LPK SIDTGMGLER+  + +   
Sbjct: 179 HFNGPEDYMGGDGDRFLEIWNLVFMQYERDETGELHPLPKPSIDTGMGLERVVAIKEGVF 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           NNYD  LFK LI A  ++ G       I ++RVI DHLRS++FL+A G+    EGRGYVL
Sbjct: 239 NNYDSSLFKPLIDAITEIVGKAPTEETIASYRVIADHLRSTTFLLAQGVNFDKEGRGYVL 298

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRIMRRA+ +  LLG  EP M  L+  L  +MG  Y  L +    ++  ++ E+ERF +T
Sbjct: 299 RRIMRRAIRHGYLLGLREPFMHRLVDTLVEQMGGHYDYLPKRAEAVKTAMKMEEERFFET 358

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++ G+ L +  L      ++ +G+VAFKLYDT+G PLD+ QD+L  +G+  +D+ +F   
Sbjct: 359 IEAGIKLFNEELQRTK--DVFSGEVAFKLYDTYGFPLDLTQDMLREKGIE-LDMATFEGK 415

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ++++RA   G G       + +L+E++G  +F+GY+                    
Sbjct: 416 MAEQKAKSRAAWKGSGDAAVSGDFKALEERHGPNRFVGYEETDTK--------------- 460

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGI 539
                  + IV  + +  + V++        V+ D TPFYAE+GGQ+GD G  +    G 
Sbjct: 461 -------TRIVALLDENFKEVQKLEG--LGWVMLDPTPFYAESGGQVGDRGELVVWSGGP 511

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ D +K    + + +   E   L     +   +D   R Q++ +HSATHLLH AL  
Sbjct: 512 NVKVLDTRK-FHALNLSYVDTEGNTLEVGQEVEALVDDSRR-QIAKHHSATHLLHAALRE 569

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV+Q GS +    LRFD TH K +++ EL+ +E  VN+++ + +    +++  E+A
Sbjct: 570 VLGEHVTQAGSLVEATRLRFDFTHPKALSAEELQKVEHWVNEVVDRAIEGEVKVLPIEEA 629

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA AL G KY D VRVV       G  S  LCGGTHV +T E+ L  I  ES + AG
Sbjct: 630 KKEGAMALFGEKYGDEVRVVRF-----GDASVELCGGTHVRNTAEVGLFAITKESGVSAG 684

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA+ G+ +         + K +   +K      +  + ++ E+ + L+       L
Sbjct: 685 VRRIEAVCGKESAKLFDHLRRERKEIVEAVKNP--EPLAGIAKLKEQIKTLKSELD-AAL 741

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
               ++L+  KI D+     I+ EV + ++K ++D ++ + +   +ML     +K   +L
Sbjct: 742 AGGAKELAEEKIGDITV---IVDEVKAGDIKKMIDEIKNRHEKVAVMLFQKKGDK--VLL 796

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              +++      A D  +  A +LGGGGG GRP  AQ+GG N  K  +A+     +L
Sbjct: 797 AAGSKNTP--VKAGDWIKEVAPILGGGGG-GRPDFAQAGGKNPEKIPEAMRAAKGYL 850


>gi|323188423|gb|EFZ73709.1| alanyl-tRNA synthetase [Escherichia coli RN587/1]
          Length = 784

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 502/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F+ A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKS 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|300975107|ref|ZP_07172874.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300308788|gb|EFJ63308.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1]
          Length = 784

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    E+
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|300976926|ref|ZP_07173678.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301027052|ref|ZP_07190429.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301049555|ref|ZP_07196510.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300298680|gb|EFJ55065.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300395217|gb|EFJ78755.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300409940|gb|EFJ93478.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|315293661|gb|EFU53013.1| alanyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|315298718|gb|EFU57972.1| alanyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|324005757|gb|EGB74976.1| alanyl-tRNA synthetase [Escherichia coli MS 57-2]
          Length = 784

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|312965610|ref|ZP_07779840.1| alanyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|312289759|gb|EFR17649.1| alanyl-tRNA synthetase [Escherichia coli 2362-75]
          Length = 784

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LNEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|229822862|ref|ZP_04448932.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271]
 gi|229787675|gb|EEP23789.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271]
          Length = 881

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/917 (37%), Positives = 522/917 (56%), Gaps = 63/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF +  H+++PS+SLIP NDPTL++ N+G+ P K  F G E P  + + 
Sbjct: 5   TSARIRQMYLDFFAEKQHQIIPSASLIPVNDPTLLWINAGVAPLKKYFDGTEVPDNRRLA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
            VQKC+R     ND++NVG T RHHT FEMLGN+S G YFK+  I  AW+ LT       
Sbjct: 65  NVQKCIRT----NDIENVGYTARHHTLFEMLGNWSIGDYFKKEVIAWAWEFLTSERWLGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +LY T Y ED+E  ++WK+  G  AD ++ +   DNFW +   GPCGP +EIF+D+G
Sbjct: 121 EADKLYATYYPEDKETPEIWKQQPGFIADHLVAVA--DNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ER++EIWNLVF +F          LP  ++DTGMGLER+
Sbjct: 178 QEFNNLAADDPENYPGG--ENERWLEIWNLVFSEFNHLPDDTYQPLPNKNVDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGIL 291
            +V+Q    NY+ DLF  +IQA E+V+G+ +   G+  V+ +VI DH+R+ SF I+DG L
Sbjct: 236 VSVIQNAKTNYETDLFVPIIQAIEKVSGVDFASAGDKQVSFKVIADHIRAVSFAISDGAL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGY+LRR++RR++ + R LG +   +  L+P +   MG+ Y EL +    +++ +
Sbjct: 296 PSNEGRGYILRRLIRRSVMHGRKLGISRSFLSELVPVIADIMGAYYQELTEQLAFVQKVI 355

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+ERF +T++ G   L+ ++++L      ++ G  AF+LYDT G PL++  ++  ++G
Sbjct: 356 LNEEERFHETIEGGEAHLNDLMANLKAEGKTVVPGAQAFQLYDTFGFPLELTVELADSQG 415

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
            + +D   F   +E QR RARA      S   +     L+    A  F+GY+ L  +   
Sbjct: 416 FS-VDQEGFETEMEAQRQRARAARSKEESMQVQSDL--LQNITDAFDFVGYETLVTN--- 469

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + +KAIV     V++  + Q+  V F+++PFYAE GGQ+ 
Sbjct: 470 --------------------ATIKAIVLDEAKVDQLPAHQEGWVFFNRSPFYAEMGGQVA 509

Query: 530 DTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           D+G  + GD    Q+ DV+K  +G F+H        L    S  L +D   R + + NH+
Sbjct: 510 DSGIILDGDQEVGQVLDVKKAPQGQFMHRIKTGEMPLTVGQSYTLEVDRAVRLKTNQNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSH +Q GS + PD LRFD +H   +T  ELK IE  VN  IA +  
Sbjct: 570 ATHLLHRALKVVLGSHANQAGSYVGPDRLRFDFSHFGKVTPEELKQIEAFVNQWIANSAN 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    M+ EDA A+GA AL G KY D VRVV++  E     S  LCGGTHV++T EI   
Sbjct: 630 VDIAEMSIEDAKATGAMALFGEKYGDVVRVVNIAGE-----SIELCGGTHVNNTNEIGTF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEY 767
            +++ES I AGIRRIEA+TGQ A +    Q E L+ + + LKV+Q   ++ R+E++ EE 
Sbjct: 685 KLLAESGIGAGIRRIEALTGQAAVADYQAQAELLQEVQNHLKVAQASQLLPRLEQLQEEL 744

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+ Q        +L   +          + DV +++  +       ++ + D  +K+  S
Sbjct: 745 RQAQAQVESLNAKLLQAEAGQVFQDVQSVGDVTYVAINLGNQSVDGMRQMADIWKKEAPS 804

Query: 823 GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++LV  S+E+K S+++ V E  L     A +L +  A ++GGGGG G+P MAQ+GG  
Sbjct: 805 NILVLVA-SQEEKVSLMVQVDEQGLAAGLKAGNLIKPLAAIVGGGGG-GKPQMAQAGGKK 862

Query: 882 GNKADQAIAGVASFLKK 898
                + +A V++ + +
Sbjct: 863 PEAIPELLAQVSAVINE 879


>gi|42522107|ref|NP_967487.1| hypothetical protein Bd0501 [Bdellovibrio bacteriovorus HD100]
 gi|48428503|sp|P61698|SYA_BDEBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39574638|emb|CAE78480.1| alaS [Bdellovibrio bacteriovorus HD100]
          Length = 907

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/939 (39%), Positives = 521/939 (55%), Gaps = 77/939 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  F+++F+KNGH+++PSSSLIP NDPTL+F N+GM  FKN F G EK  Y  
Sbjct: 1   MKS-SEIRNAFIKYFEKNGHKVVPSSSLIPENDPTLLFANAGMNQFKNTFLGLEKRDYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI  AW+ LTKE  +
Sbjct: 60  AVTAQKCVRAGGKHNDLENVGFTARHHTFFEMVGNFSFGDYFKKDAIHFAWEFLTKELAI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+TV+  D+EA  +W    G+  ++I R    DNFW M +TGPCGPC+EIF+D G
Sbjct: 120 PKEKLYVTVHISDDEAADIWHNQEGVPRERIFRF-DKDNFWKMGDTGPCGPCTEIFYDHG 178

Query: 181 EC---IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                I     G     +R++EIWNLVFMQ+ +        LPK S+DTG GLERM+  +
Sbjct: 179 PKAGTISDPFKGIEAGEDRFVEIWNLVFMQYFENPPGTLTPLPKPSVDTGGGLERMSAAM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------NHRVIVDHLRSSSFL 285
           Q   NNYD DLF+ +IQ + ++  ++Y  +  V              RV+ DH RS+SFL
Sbjct: 239 QGVFNNYDTDLFQPMIQLACKIGNIEYISDKEVLAKNPAAAEVTSALRVLADHCRSTSFL 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           IADG LP+NEGRGYVLRRIMRRA+ Y R L   +  +  +  AL   MGS YPEL   + 
Sbjct: 299 IADGALPSNEGRGYVLRRIMRRAIRYGRKLSADKSFLPGMAEALIESMGSVYPELKTRRD 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403
            I  T+R E++RF  TLD+G  +L+  L       I  L+G+V F++YDT+G P D+ + 
Sbjct: 359 HILNTIRDEEDRFIATLDKGTAILEDELKKAKSKGIKELSGEVVFRMYDTYGFPADLTRV 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT----QFIG 459
           I   +G+  ++  +F + +E+ R++++A   G   G  E       + Y  +     F+G
Sbjct: 419 IANEQGIE-VNEAAFEKEMEDNRAKSKASWKGKSMGADEAHMIKFAKDYLQSGKSVTFLG 477

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y+   G                          V  +      V+E  +G    ++ + T 
Sbjct: 478 YEGTIGD-----------------------GKVMGLSNGQAEVQELKTGDTGLMILNATT 514

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ GD G  + D  R ++ +  K  + I +HH  +E G  +   ++V  +D   
Sbjct: 515 FYGEGGGQSGDVGYIMHDTNRARVINTTK-IDDIVLHHVEIEHGSFKVGTAVVTGVDPVE 573

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR  + NHSATHLLH AL  +LG+HV+Q GS +     RFD TH+KP++S E+K IED V
Sbjct: 574 RRNTAANHSATHLLHAALRKVLGTHVTQAGSLVDSQKTRFDFTHNKPVSSEEIKKIEDLV 633

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ IA+  PV T +M+ + A+  GA AL G KY   VRV+++     G  S  LCGGTHV
Sbjct: 634 NEQIARCNPVQTEMMSHKAALEKGAMALFGEKYASDVRVLTM-----GDFSCELCGGTHV 688

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS--LASFLKVSQ---- 753
            +T EI L  IVSE+ + +G+RRIEAIT   A  ++M     L     A+  + S     
Sbjct: 689 KNTSEIRLFKIVSEAGVSSGVRRIEAITADNALQYMMSAVTHLDDALAAAGFQKSPHYIK 748

Query: 754 --------GNVVGRVEEIWEEYRKLQLIHAKRK--------LQLNVEDLSCHKIADVNFM 797
                     +  RVE + ++ ++L+    K +        L  N         A    +
Sbjct: 749 HLETTGETATLANRVESLKDQVKQLEKEMKKLQGGQVNVDDLAANALTFKTKAGASAKLV 808

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              +   D + L  V D L+ KIQSGI+++VG   +    +++ V++++     A DL +
Sbjct: 809 LADVPLDDRQVLAEVTDHLKNKIQSGIVVVVG-QGDGSHPIIVSVSKEISGETKAGDLLK 867

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A V+GG GG GRP  AQ   PN  + ++A + V S L
Sbjct: 868 EVAGVMGGKGG-GRPDFAQGAAPNRAQLNEAFSKVKSML 905


>gi|315613410|ref|ZP_07888319.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314645|gb|EFU62688.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 874

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 498/917 (54%), Gaps = 70/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQG--EIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           +  + +  +       + + S + AIV       VE    G    ++F +TPFYAE GGQ
Sbjct: 450 ETLQNITVESVFNYNASQLPSKLVAIVVDNAEAEVETVSEG-TASLIFAETPFYAEMGGQ 508

Query: 528 LGDTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G  + +  ++   +TDVQK   G  +H   V    L  + +  L+ID   R ++  
Sbjct: 509 VADHGQILDESGKVVATVTDVQKAPNGQPLHTVEVL-APLSLDKNYKLSIDKNRRHRVMK 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  ILG H +Q GS    + LRFD TH + +T  EL++IE  VN+ I +
Sbjct: 568 NHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWE 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            + V T   + + A   GA +L G KY   VRVV++     G +S  LCGGTHV +T EI
Sbjct: 628 AIAVETVETDIDTAKEMGAMSLFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + 
Sbjct: 683 GLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEVPHKVEGLQ 742

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           E+ R+LQ  +A+ K +           +  +     +++  +S  D+  L++  D  ++K
Sbjct: 743 EQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHRYIASQVSVSDAGALRTFADNWKQK 802

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S +++LV    + K +VL+      +   +A +L +  A ++  G GGG+P MA +GG
Sbjct: 803 DYSDVLVLVAAI-DDKVNVLVA---SKIKEVHAGNLVKELAPIV-DGRGGGKPDMAMAGG 857

Query: 880 PNGNKADQAIAGVASFL 896
            N  K  + +  VA  L
Sbjct: 858 SNQAKIQELLDAVAGKL 874


>gi|313648345|gb|EFS12789.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
          Length = 784

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   ID   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADIDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IMN E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMNLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|300899932|ref|ZP_07118138.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300356519|gb|EFJ72389.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1]
          Length = 784

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 500/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGTNFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|288904885|ref|YP_003430107.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|288731611|emb|CBI13166.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
          Length = 872

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 496/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++   +G
Sbjct: 357 KREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELAEDKG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA+ +  GS   +    S              +   S F 
Sbjct: 417 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLS-------------SITEESVFS 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            ED               + S +  I+   E  E    GQ   +VF +TPFYAE GGQ+ 
Sbjct: 463 YED-------------EVLDSTLSVIIADNERTEAVSEGQ-ALLVFAKTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  NH
Sbjct: 509 DHGVIKNDKGDIVARVTDVQKAPNGQALHTVDVLSS-LSVGTTYTLEIDSKRRHRVIKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI +
Sbjct: 628 PVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             KLQ  +A+ K +              +   V +++  ++  D+  L++  D  ++K  
Sbjct: 743 LHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
             K    +A VA  L
Sbjct: 858 AAKIADLLAAVAENL 872


>gi|300820470|ref|ZP_07100621.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300906808|ref|ZP_07124489.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300924257|ref|ZP_07140242.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|301305420|ref|ZP_07211514.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|301326280|ref|ZP_07219656.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|309795155|ref|ZP_07689574.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|300401409|gb|EFJ84947.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300419533|gb|EFK02844.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300526734|gb|EFK47803.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300839340|gb|EFK67100.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1]
 gi|300847020|gb|EFK74780.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|308121126|gb|EFO58388.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|315254472|gb|EFU34440.1| alanyl-tRNA synthetase [Escherichia coli MS 85-1]
 gi|323154906|gb|EFZ41098.1| alanyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|323159803|gb|EFZ45775.1| alanyl-tRNA synthetase [Escherichia coli E128010]
 gi|323167133|gb|EFZ52851.1| alanyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323183219|gb|EFZ68616.1| alanyl-tRNA synthetase [Escherichia coli 1357]
 gi|324017048|gb|EGB86267.1| alanyl-tRNA synthetase [Escherichia coli MS 117-3]
          Length = 784

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|300930550|ref|ZP_07145945.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300947031|ref|ZP_07161254.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300954931|ref|ZP_07167347.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301645328|ref|ZP_07245276.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312973095|ref|ZP_07787268.1| alanyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|300318120|gb|EFJ67904.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300453345|gb|EFK16965.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300461571|gb|EFK25064.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|301076398|gb|EFK91204.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|310333037|gb|EFQ00251.1| alanyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|315615081|gb|EFU95718.1| alanyl-tRNA synthetase [Escherichia coli 3431]
          Length = 784

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 500/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|300941066|ref|ZP_07155582.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300454193|gb|EFK17686.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1]
          Length = 784

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 500/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|160891225|ref|ZP_02072228.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492]
 gi|317481112|ref|ZP_07940189.1| tRNA synthetase class II [Bacteroides sp. 4_1_36]
 gi|156859446|gb|EDO52877.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492]
 gi|316902713|gb|EFV24590.1| tRNA synthetase class II [Bacteroides sp. 4_1_36]
          Length = 872

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/918 (36%), Positives = 503/918 (54%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G KY  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG+AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LL+  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKNEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVVDTKKE-NNLPIH--ITKKLPEHMEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    +   ++ L  L +    +  ++ G + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     + +VN +  I   + + ++ +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKVIKFCAPLPAETVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 QITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + AI  V   
Sbjct: 852 GGKNADGLNAAIDKVLEL 869


>gi|118594479|ref|ZP_01551826.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
 gi|118440257|gb|EAV46884.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181]
          Length = 872

 Score =  848 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/913 (39%), Positives = 530/913 (58%), Gaps = 56/913 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF+  GH ++ SSSL+P  DPTL+FTN+GM  FK++F G+E+  Y  
Sbjct: 1   MLSSQHIRAQFLKFFEDKGHHVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGEEQRNYVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT+ F +
Sbjct: 61  AASSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWELLTEVFAI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173
            + +L +TVY +D EA+ +W+K  G+  +KII+I  N       DNFW M +TGPCGPCS
Sbjct: 121 PKEKLLVTVYADDNEAYSIWEKDIGIPTEKIIKIGDNKGSQYASDNFWMMGDTGPCGPCS 180

Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG+PGS +E+G+R+IEIWNLVFMQF + +K     LPK S+DTGMGLER
Sbjct: 181 EIFYDHGDTIEGGVPGSHNEDGDRFIEIWNLVFMQFNRDDKGVMHPLPKPSVDTGMGLER 240

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  +LQ+  +NYDID+F+ LI  + ++T  K       + +V+ DH+R+++FLI DG+LP
Sbjct: 241 ITAILQDVHSNYDIDIFRELIAEAAKLT--KTNNTEHPSLKVLSDHIRATTFLIGDGVLP 298

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           ANEGRGYVLRRI+RRA+ +   LG   P    L+  L   MG  Y    +   LIE  + 
Sbjct: 299 ANEGRGYVLRRIIRRAIRHGYKLGVRAPFFFKLVAPLNLVMGDTYRFSKEQSSLIESEIH 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF +T++ G+ +L+  +  L       ++G VAFKL+DT G PLD+  D+    G+
Sbjct: 359 LEEKRFFETIENGMGILEDTIKELVGKNKTAISGKVAFKLHDTFGFPLDLTADVCRENGI 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           + I+   F+  +++Q++ AR            K    +      T F+GYD         
Sbjct: 419 S-INSEEFDAEMDKQKTMAREA-------GNFKAKLQINYSGPDTVFLGYD--------- 461

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +  S+I+  I+   + V    +G+   ++ DQTPFYAE+GGQ+GD
Sbjct: 462 --------------KSSTSAILLGILTHEQSVASITNGESAMLILDQTPFYAESGGQIGD 507

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +     +TD  K    I+VH   + +G L     +   I++++R+ +  NHSAT
Sbjct: 508 IGSISSEEGVFDVTDTFKIKGNIYVHVGSMIKGKLSINDKIEADINHEHRQHVMRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H AL  ILG+H+ Q GS +     RFD +H KP+T  E  SIE  VN  I +N    
Sbjct: 568 HLMHKALKEILGNHIEQKGSLVDSYRTRFDFSHPKPLTYKEKTSIELMVNQEILKNQTTQ 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +M+ + A  +GA  L G KY D+VRV+ +        S  LCGGTHV+ TG+I L  I
Sbjct: 628 ASVMDIDSAKKTGAMMLFGEKYGDKVRVLEIGN------SKELCGGTHVAKTGDIGLFKI 681

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SES I +GIRR+EA TG      +  Q+  + ++   L V    V  +V ++ ++ +  
Sbjct: 682 QSESGISSGIRRVEATTGLNVIGLIAAQETIIDNVTKELNVGASEVTSKVSQLMKQLKDN 741

Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           + I ++ K ++   +               F+   +  V++ EL+ ++D L++K QS +I
Sbjct: 742 EKIISQLKSKIAGSEGSDLVGQAIDTGKYQFLGVSVDRVEANELREMIDNLKEKFQSAVI 801

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G     K S  + VT++L     A D+A+L  + +GG GG GR +MA +GGPN    
Sbjct: 802 IL-GSHSNNKVSFAVGVTDNLTQEIKAGDIAKLLGEAVGGKGG-GRDNMAMAGGPNIQLI 859

Query: 886 DQAIAGVASFLKK 898
           D+AI+ +   L K
Sbjct: 860 DEAISQIKDHLIK 872


>gi|306830937|ref|ZP_07464099.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426960|gb|EFM30070.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 888

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 496/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 21  TSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 80

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  + FD 
Sbjct: 81  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDF 136

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 137 PKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 192

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 193 EDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 252

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 253 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 312

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 313 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIV 372

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++   +G
Sbjct: 373 KREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELAEDKG 432

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA+ +  GS   +    S              +   S F 
Sbjct: 433 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLS-------------SITEESVFS 478

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            ED               + S +  I+   +  E    GQ   +VF +TPFYAE GGQ+ 
Sbjct: 479 YED-------------EVLDSTLSVIIADNKRTEAVSEGQ-ALLVFAKTPFYAEMGGQVA 524

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  NH
Sbjct: 525 DHGMIKNDKGDIVARVTDVQKAPNGQALHTVDVL-ASLSVGTTYTLEIDSKRRHRVIKNH 583

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 584 TATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNAI 643

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI +
Sbjct: 644 PVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 698

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E+
Sbjct: 699 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQEQ 758

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             KLQ  +A+ K +              +   V +++  ++  D+  L++  D  ++K  
Sbjct: 759 LHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKDY 818

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 819 SDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 873

Query: 882 GNKADQAIAGVASFL 896
             K    +A VA  L
Sbjct: 874 AAKIADLLAAVAENL 888


>gi|325977827|ref|YP_004287543.1| alanyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177755|emb|CBZ47799.1| alaS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 872

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 496/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++   +G
Sbjct: 357 KREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELAEDKG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA+ +  GS   +    S              +   S F 
Sbjct: 417 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLS-------------SITEESVFS 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            ED               + S +  I+   +  E    GQ   +VF +TPFYAE GGQ+ 
Sbjct: 463 YED-------------EVLDSTLSVIIADNKRTEAVSEGQ-ALLVFAKTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  NH
Sbjct: 509 DHGMIKNDKGDIVARVTDVQKAPNGQALHTVDVL-ASLSVGTTYTLEIDSKRRHRVIKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI +
Sbjct: 628 PVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             KLQ  +A+ K +              +   V +++  ++  D+  L++  D  ++K  
Sbjct: 743 LHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
             K    +A VA  L
Sbjct: 858 AAKIADLLAAVAENL 872


>gi|315289216|gb|EFU48614.1| alanyl-tRNA synthetase [Escherichia coli MS 110-3]
          Length = 784

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 502/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNESRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F+ A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|332088620|gb|EGI93733.1| alanyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 784

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|329957545|ref|ZP_08298020.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328522422|gb|EGF49531.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 873

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/919 (36%), Positives = 501/919 (54%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G  Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIGDMSGTAYGKNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  L+  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKE-NNLPIH--ITKKLPEHLEAPLMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS ++P+ LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVSPESLRFDFSHFQKVTDEEIRRVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFSS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732

Query: 763 IWEEY----RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE     ++++    +++ QL  + L    +I  V  +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAVKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 852 AGGKNPDGLNAAVEKVIEL 870


>gi|302561723|ref|ZP_07314065.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479341|gb|EFL42434.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 890

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/921 (37%), Positives = 511/921 (55%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GAEGGPAVNDERYVEIWNLVFMQYERGEGTGKDDFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG++Y   +   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIARATELTGVQYGDAHASDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAITDTKSAGSAVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR +A+A +L   +G  +   +  + ++ GAT FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQREKAKADALSKKTGHADLGAYREIADRAGATDFIGYTATEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGILVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D G  ++I D QK   G++VH  +V+ G +        +ID + R  ++
Sbjct: 511 GQIGDTGRIRADNGAVIEIRDCQKPVPGVYVHKGVVQVGEITVGARAHASIDGRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVNQLTELLKGRSEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V       +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVAVVTGQVPDGTTPDDLRKLVLDVRG 805

Query: 819 KIQSGIIMLVG--ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G  ++V        K   +I   +   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRAVVVALFTVNNGKPLTVIATNDAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N     +A+  V   +
Sbjct: 865 QGGGQNPAAVGEAVDAVERLV 885


>gi|149011620|ref|ZP_01832816.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|147764051|gb|EDK70983.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
          Length = 872

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 498/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++  +    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEVE-VDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINELFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           +  +D   F  A++EQ+ RARA ++  GS   +                           
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  + +  +       + +SS + AIV     VE    G    ++F +T FYAE GGQ+ 
Sbjct: 450 ETLQNITVESVFNYNASQLSSKLVAIVADNAEVEAVSEG-TASLIFAETSFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH
Sbjct: 509 DHGQILDESGKVVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L
Sbjct: 568 TATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L
Sbjct: 628 EVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  + E + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKAEGLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ  +A+ K +            + +VN   +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +GG N
Sbjct: 803 SDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAGGSN 857

Query: 882 GNKADQAIAGVASFL 896
             K  + +  VA  L
Sbjct: 858 QAKIQELLDAVAGKL 872


>gi|55820540|ref|YP_138982.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822431|ref|YP_140872.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|81559736|sp|Q5M126|SYA_STRT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|81560908|sp|Q5M5L5|SYA_STRT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55736525|gb|AAV60167.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55738416|gb|AAV62057.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
          Length = 872

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/913 (36%), Positives = 500/913 (54%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FDL
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+           
Sbjct: 417 FK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  IV      +   SGQ   +VF+QTPFYAE GGQ+ 
Sbjct: 463 -------------YEAETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G           ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 509 DHGTISDAAGTTVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIIKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
              LQ  +A  K K            + + N + +I S+V   D+  L++  D  ++   
Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L    +EK   ++   +E+     +A +L ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            N     ++ VA 
Sbjct: 858 ANSIQDLLSAVAE 870


>gi|218246265|ref|YP_002371636.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|218166743|gb|ACK65480.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801]
          Length = 879

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/904 (37%), Positives = 519/904 (57%), Gaps = 48/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+    H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+ P Y   T
Sbjct: 9   TGAQIRDKFLQFYASKHHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKNPDYPRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  +W+L T+ F+L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ED+EAF++W+   G+   +I R+   DNFW    TGPCGPCSE+++D    
Sbjct: 124 ENIVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y   +    V+ +VI DH+RS   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIETAAKIAGINYKNTDEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G     +  +         S YP + + +  I+  L+ E+ RF 
Sbjct: 303 VLRRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +++   K+  ++G  AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 363 ETLERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+ R++A    +   T +     L E    T+F+GY   +               
Sbjct: 422 AAMKEQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYSSPQ--------------- 465

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                   + + V+A++  G+ VE A +G +V+++ DQTPFY E+GGQ+GD G   GD +
Sbjct: 466 --------IIAKVQAVLVAGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDNL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV+K++ GIFVH   VERG +  E ++  TID   RR++  +H+ATHLL  AL  
Sbjct: 518 VVRIEDVKKES-GIFVHFGRVERGTIAVENTVTATIDRACRRRVQAHHTATHLLQAALKK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + ITSAEL+ IE  +N  IA+       IM+ E A
Sbjct: 577 VVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEKA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY+  VRV+ V        S  LCGGTHV +T EI L  I+SES I +G
Sbjct: 637 KAKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  + +L   K+
Sbjct: 692 VRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVKQ 751

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +   D    +   V     ++SE+   D K L++  + LQ+K+    ++L  +  E 
Sbjct: 752 ELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSED 811

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K  ++   +E +    +  A       AK+ GGGGG GRP++AQ+GG + NK  +A+   
Sbjct: 812 KVVLVAAFSEKVHKEKQLMAGKFIGEIAKICGGGGG-GRPNLAQAGGRDANKLPEALLIA 870

Query: 893 ASFL 896
              L
Sbjct: 871 KQQL 874


>gi|296185456|ref|ZP_06853866.1| alanine--tRNA ligase [Clostridium carboxidivorans P7]
 gi|296050290|gb|EFG89714.1| alanine--tRNA ligase [Clostridium carboxidivorans P7]
          Length = 879

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/907 (36%), Positives = 514/907 (56%), Gaps = 48/907 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P    VTT
Sbjct: 6   LNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPKTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE AI  AW+  T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y +D+EA  LW K + +   +I R+  +DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHGI-GPCGPCSEIHFDRGNEK 180

Query: 184 PG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                    + + +R +E WNLVF QF++        L   +IDTGMGLER+AT++Q   
Sbjct: 181 INTVEEFLKAADEDRVVEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIMQGTN 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +++D  + ++    +V  ++Y  +    ++ RVI DH+RS SF+I+DGILP+NEGRGY
Sbjct: 241 SIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVITDHVRSVSFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + + LG     +  L   +       Y EL + +  I++ ++ E+ERF 
Sbjct: 301 VLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGNYAELAEKRDYIKKVIKLEEERFD 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D G+ +L+  + +L    + IL+G+ AFKLYDT+G P+++ ++IL  + +  +D+  
Sbjct: 361 ETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTYGFPIELTEEILEEKDMK-VDLEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN+ ++ QR RARA          E    +       T+F GYD L              
Sbjct: 420 FNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIETKFNGYDTL-------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      +S VK +++  E V   V G K  +V + TPFYAE GGQ+GD G    D
Sbjct: 466 ---------HTTSKVKILIKNEEFVSTMVEGDKGVIVTENTPFYAEMGGQIGDHGIISTD 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             + ++ D +K   G  +H   V  G +  +  + L ++   R  +  NH+ATHLL+ AL
Sbjct: 517 SFKAEVVDCKKNVAGKILHFVKVLSGTIGVDHQVTLNVNEARRNNIRRNHTATHLLNEAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HV Q+GS +  + LRFD  H +  +  ELK +E  VND I + L V T+ M+ E
Sbjct: 577 RKVLGEHVHQSGSYVDDERLRFDFNHFEAPSHEELKKVEALVNDEIVKVLNVQTQSMSLE 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL   KY D VRVVSV     G  S  LCGGTHVS++GEI L  I+SE+ + 
Sbjct: 637 EAKETGAIALFDNKYKDEVRVVSV-----GDFSKELCGGTHVSNSGEIGLFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--EIWEEYRKLQLIHA 775
           AGIRRIEA+TG +A +++  +++ +K + + L+ S+  ++ +++   +  + +  ++   
Sbjct: 692 AGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKLRCSEKEIIHKLDLQALELKEKDKEIAEL 751

Query: 776 KRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K KL  + ED       ++  +   + ++ +VD   L+ + D ++ K    +++L  +  
Sbjct: 752 KSKLAGSAEDEILNGFQEVKGIKLFTGVLKDVDGNALRDLADKIRNKGGECVVVLGSVV- 810

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K   + + T++ + +  +   + +  A + GGGGG GRP MAQ+GG    K + AI  
Sbjct: 811 EGKVQFVSMTTKEAIAKGVHCGKIIKEVAAIAGGGGG-GRPDMAQAGGKLPEKVEDAIGS 869

Query: 892 VASFLKK 898
             S L+K
Sbjct: 870 CVSILEK 876


>gi|237750646|ref|ZP_04581126.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229373736|gb|EEO24127.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 897

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/920 (37%), Positives = 519/920 (56%), Gaps = 70/920 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  ++EFF+  GH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 17  DIRAKYIEFFKSKGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSS 75

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  
Sbjct: 76  QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSL 135

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+T+++ D+EAF+LW +   + + +I R+   DNFW M +TGPCGPCSEI+ DQG E  
Sbjct: 136 LYVTIHESDDEAFELWCE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFF 193

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    EG+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + + NN
Sbjct: 194 HSEEDYFGGEGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVIALKEGEINN 253

Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--------------------NIVNHRVIVDHLRSSS 283
           +D  LF  ++Q  +++TG  Y  +                    +I + RVI DH R+ +
Sbjct: 254 FDSSLFAPIMQCIKELTGKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADHARAVA 313

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           FL+A G+    EGRGYVLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y  LI+ 
Sbjct: 314 FLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYSYLIER 373

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIM 401
           K  ++E  R+E+ERF +T++ G+ L    L  +    ++  NG++AFKLYDT+G PLD+ 
Sbjct: 374 KNALQEQCRAEEERFFETIESGMALFQTELDSMRQKNEKSFNGEIAFKLYDTYGFPLDLT 433

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           QD+L   GL G+D+  F + ++EQ+ R++AH  G G    +  + +L  +YG  +F+GY 
Sbjct: 434 QDMLRELGL-GVDMQGFEKCMQEQKDRSKAHWKGSGDSVKDGDFNALLSEYGKNEFVGY- 491

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                +  +  S I+  +    + VE   +GQ+  V+ + TPFY
Sbjct: 492 ---------------------ERMSVESKILALLDSNFKRVESLQAGQEGWVMLESTPFY 530

Query: 522 AEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            E+GG +GD G    D   + Q+ D QK   G+ +   +    +L+    +   +D   R
Sbjct: 531 PESGGPVGDKGILKNDSHIVTQVLDTQKYF-GLNLSKVVATS-MLKVGDLVKAQVDSS-R 587

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            ++  +HSATHLLH+AL  ILGSH++Q GS +  + LRFD +H K ++  EL+ IE  VN
Sbjct: 588 FEIIKHHSATHLLHYALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVDELEQIESLVN 647

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + IA++ P +   M  E A A GA AL G KY + VRV+++        S  LCGG H+ 
Sbjct: 648 EEIAESSPQICETMGIEQAKAKGAMALFGEKYGESVRVITLG------DSVELCGGIHIH 701

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T EI   YIV ESS+ +G+RRIEA+ G+ A ++     E +KSL   LK    +V+  V
Sbjct: 702 NTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYNYGKAALESIKSLKEQLKAQ--DVLQGV 759

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            ++    +  +   +  K + +V+ L   ++  V  +   +  V++KE K ++D  + + 
Sbjct: 760 AKLQNALK--EARESANKAKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKDIIDRAKNEN 817

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +   I+LV  S   K S+   V    +    A    +  A++L GG GGGR   A +GG 
Sbjct: 818 EKVAILLVTES-GGKVSLTAGVKG--VSSLKAGAWVKQVAQIL-GGNGGGRDDFATAGGK 873

Query: 881 --NGNKADQAIAGVASFLKK 898
               +K  +A+    S  ++
Sbjct: 874 VTESSKVQEALDLAKSIARE 893


>gi|300919279|ref|ZP_07135796.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300413634|gb|EFJ96944.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1]
          Length = 784

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQTDVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|260893293|ref|YP_003239390.1| alanyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865434|gb|ACX52540.1| alanyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 874

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/907 (38%), Positives = 533/907 (58%), Gaps = 49/907 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F++ GH +LPS+SLIP  DP+L++T +GMVPFK  FTG  KP ++ V
Sbjct: 1   MEAKEIRQRFLDYFRRKGHVILPSASLIPAGDPSLLWTAAGMVPFKPYFTGAAKPEFRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R      D+++VG+T RH TFFEMLGNFSFG YFK  AI +AW+ +TKE  LD
Sbjct: 61  ATCQKCLRTQ----DIESVGKTARHLTFFEMLGNFSFGDYFKAEAIAMAWEFVTKELGLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ +V+++DEEAF+LW K+ G+  ++I+R+  + NFW +   GPCGPCSEI++D G 
Sbjct: 117 IDRLWFSVFEDDEEAFELWCKM-GVKPERIVRLGRDTNFWEIGV-GPCGPCSEIYYDFGP 174

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G       + +RY+EIWNLVF+Q+ +  K     L    IDTGMGLER+ATVLQ  
Sbjct: 175 AFACGPDCHVGCDCDRYLEIWNLVFIQYYRDEKGNYLPLENKGIDTGMGLERVATVLQGV 234

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           T+ +  DLF+ ++ A+E+          +   +VI DH+R+ +F +A+G+LP+NEGRGYV
Sbjct: 235 TSPFATDLFRDIVAAAERELRSPVPNRRV---KVIADHVRAVTFGVAEGVLPSNEGRGYV 291

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RR++RRA+ Y  L G  EP +  +  A+C +MG  YPEL+  +  I   +R+E+ERF  
Sbjct: 292 IRRLLRRALLYGVLAGREEPFLGKVAAAVCDKMGEVYPELVANREHILRVIRAEEERFLG 351

Query: 361 TLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL +G+ LL+  +        ++L G+ AF+LYDT+G PL++ ++I   +GLA +D   F
Sbjct: 352 TLSQGMELLNRNIEQVLARGGKVLPGEEAFRLYDTYGFPLELTEEICAEKGLA-VDKEGF 410

Query: 419 NQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
            + +E QR RAR     +   G  E+ +  L+E+ G+  F+GY+ L              
Sbjct: 411 KREMEAQRERARRARETVEYLGERERFYRELREEKGSVDFVGYEQLNTR----------- 459

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V A+V++ +    A +G++VEVV D TPFYAE GGQ+ D G     
Sbjct: 460 ------------SRVVALVKEAKPQSSASAGEEVEVVLDVTPFYAEKGGQVSDKGVLRFP 507

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                +  V++  EG+ VH   V++G L+    +   +D + RR+ + NH+ATHLLH AL
Sbjct: 508 SGEALVEYVEQPVEGMVVHRVKVQKGELKVGDEVEAAVDAERRRRTARNHTATHLLHQAL 567

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS + PD LRFD  H + +T  E+K +E  VN+I+   LPVVT   + E
Sbjct: 568 KEILGPHVKQAGSLVAPDRLRFDFDHYQALTPEEIKRVEKRVNEIVLAALPVVTFTTSLE 627

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA AL G KY + VRVV +     G +S  LC GTH+ +T E+ +  IV+E+S+ 
Sbjct: 628 EAQAMGAVALFGEKYGETVRVVKI-----GDYSIELCAGTHLRNTAEVGVFKIVAEASVA 682

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           A  RRIEA+TG+RA ++    ++  + +A  LK     +  +VE   +E + L   +   
Sbjct: 683 ANTRRIEAVTGERALAYFEELEDDYRRIAFLLKAPARGLSQKVEAWLQEMKALARENEAL 742

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +L +  +        +I  V  ++  +   D+  L+S+ D L++K+ +  ++L+G S 
Sbjct: 743 RDKLALYTMQELLDKVQEIDGVKVLAAKVEAPDTARLRSLADLLREKLGNASVVLLGASG 802

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K ++++  T   + R  NA  + +  A+V+ GGGG GR    Q+GG N  +  +A+  
Sbjct: 803 DGKVNLVVAATPGAVARGINAAQIVKAMAQVVEGGGG-GRAEFGQAGGKNPGRLGEALRL 861

Query: 892 VASFLKK 898
               L++
Sbjct: 862 GQELLRQ 868


>gi|116333833|ref|YP_795360.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
 gi|122269480|sp|Q03R43|SYA_LACBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116099180|gb|ABJ64329.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367]
          Length = 879

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/918 (35%), Positives = 491/918 (53%), Gaps = 67/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IR  +L+FF+  GH + PS+SL+P +DP+L++ NSG+   K  F+GQ  P    +T
Sbjct: 5   TSSQIRQMYLDFFKSKGHTIEPSASLVPKDDPSLLWINSGVATMKKYFSGQVVPENPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  AW+LLT    F  
Sbjct: 65  SSQKSIRT----NDIENVGKTARHHTLFEMLGNFSVGDYFKKEAIAWAWELLTSPDWFGW 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A   W+ + G++ D II     DNFW + E GP GP SEIF+D+G
Sbjct: 121 DPDKLYMTVYPKDTDAKDAWEAV-GVAPDHII--AVEDNFWDIGE-GPSGPDSEIFYDRG 176

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+E+WN+VF QF  +       LP+ +IDTGMGLER+
Sbjct: 177 EAFNNLAADDPENYPGG--ENERYLEVWNIVFSQFNHEPDGTYKPLPRKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGI 290
            ++ Q    N++ DLF  LI+ +  ++  K+ G    + ++ +VI DH R+ +F I DG 
Sbjct: 235 VSIFQNAKTNFETDLFMPLIEKTAALSAGKHYGANAEDDISFKVIADHARAITFAIGDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYV+RR++RRA+   + LG     +  L+P +   M + YPE+++    I + 
Sbjct: 295 LPGNEGRGYVIRRLIRRAIVNGQKLGIEGAFLDQLVPVVGQIMQAYYPEVLEQSDYIAKV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +RSE++RFG+TL  GL LL+ +++ L +     + G  AFKLYDT+G P+++ ++    +
Sbjct: 355 VRSEEDRFGETLTDGLNLLNSLIADLKQQGGNQIAGADAFKLYDTYGFPVELTEEYADDQ 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F   +++Q+ RAR       +   +     L      ++++GY  L     
Sbjct: 415 GIT-VDEAGFKAEMQKQKDRARNARGKQKAMGLQHDL--LINVKTPSEYVGYTQLAT--- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                               +S +  +V   E+V+   SG   E +FD TPFYAE GGQ+
Sbjct: 469 --------------------TSKLTVLVAGDELVDHVTSG-TAEAMFDVTPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  + +   +   + DVQ    G  +H   V    + T  +  L +D     ++  N
Sbjct: 508 ADKGDILDEAGHVVAHVADVQHAPNGQNLHTLTVV-APMETGATYQLKVDTIFHSKVEKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  + G H  Q GS +  D LRFD TH   +  A+L   E  VN  I + 
Sbjct: 567 HTATHLLDKALREVFGEHTQQAGSLVEGDYLRFDFTHFGQVDPADLAKAEALVNQKIFEE 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV T   + E A   GA AL   KY   VRVVS      G   +  CGG HV +T EI 
Sbjct: 627 LPVTTVETDIESAKKMGAIALFSEKYGKVVRVVS-----AGDFVTEFCGGNHVKNTNEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  I SES + AG+RRIEA+T   A ++L   DE L ++ + LKV+Q   +  +V+ +  
Sbjct: 682 LFKITSESGVGAGVRRIEAVTSAAAYAYLHDHDEILNAVGADLKVTQVDEIEQKVQALQA 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + + L+   A  + +L  ++            +   +S  +      +L+++ D  + + 
Sbjct: 742 QVKALEQQQATLEGKLASQEAGAVFDHVTTAGNYQLISGTVQVSKMDQLRALADTWRDQA 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L G     KA++++ V+ D   +  A DL +  +  + GG GGGRP++AQ+GG 
Sbjct: 802 LSDVLVL-GAEVNGKANLIVAVSADKQKQVKAGDLIKAISPKINGG-GGGRPNLAQAGGK 859

Query: 881 NGNKADQAIAGVASFLKK 898
           N      A+   A +L +
Sbjct: 860 NPAGLPDAMTAAADWLAE 877


>gi|228477888|ref|ZP_04062502.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228250378|gb|EEK09618.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 872

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/915 (35%), Positives = 495/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+           
Sbjct: 417 FK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  IV      +   SGQ   +VF+QTPFYAE GGQ+ 
Sbjct: 463 -------------YEAETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 509 DHGTISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              LQ  +A  K +              +   V +++  +   D+  L++  D  ++   
Sbjct: 743 LHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D     +A +L ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIGEKVNVLVASKSKD----VHAGNLIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            N     ++ VA  L
Sbjct: 858 ANGIQDLLSAVAEQL 872


>gi|327251414|gb|EGE63100.1| alanyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 784

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVNFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|309786227|ref|ZP_07680855.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308925972|gb|EFP71451.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 784

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 500/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ   VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|118475098|ref|YP_892193.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|205830013|sp|A0RPR0|SYA_CAMFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118414324|gb|ABK82744.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 845

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 526/896 (58%), Gaps = 57/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  +L+FF+  GHE++ S+ L+P +D TL+FTN+GMVPFK+IFTG        + T+ 
Sbjct: 2   DIRKEYLDFFKSKGHEIITSAPLVP-DDATLLFTNAGMVPFKSIFTGDVPRPNPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L + +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAISYAWEFVTEVLKLPKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV+++D+EA++LW+K   +  D+I R    DNFW+M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHEKDDEAYELWQKF--IQKDRIYRFGDKDNFWAMGDTGPCGPCSEIFYDQGSEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQFE+        LPK SIDTGMGLER+  + ++K +N
Sbjct: 179 NSDEDYMGGDGDRFLEIWNLVFMQFERSKDGTMTPLPKPSIDTGMGLERVTAIKEDKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI    ++   +YE     ++RVI DH+RS +FL+A G+    EGRGYVLRR
Sbjct: 239 YDSSLFMPLINEVAKLCHKQYEYKTGASYRVISDHIRSVTFLLAQGVNFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +   MG  Y  L + K  ++E ++ E+ERF  T+ 
Sbjct: 299 ILRRAVRHGYLLGIKEPFMYKLVDKVVELMGEHYSYLKEKKEYVKELIKLEEERFLATIV 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L+    + + +G+VAFKLYDT+G PLD+  D+L  +GL+ +D   F+  + 
Sbjct: 359 AGLDLFNEELAKTSSN-VFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VDEAKFDALMN 416

Query: 424 EQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EQ++RA+A   G G    E   + +L E++G  +FIGYD L+ S                
Sbjct: 417 EQKARAKASWKGSGDAAKESGDFKTLLEEFGENKFIGYDNLKSS---------------- 460

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S ++  +  + + V E  +G+   V+ D TPFYA++GGQ GDTG   G+   L 
Sbjct: 461 ------SKVLALLNSEFKRVNELKNGEIGYVMLDSTPFYAQSGGQCGDTGML-GENQALD 513

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                KK  G+ +      +  ++    ++  +   NR ++  +HSATHLL  AL  +LG
Sbjct: 514 ----TKKYFGLNLSMIEA-KNSIKIGDIVLCEV-SLNRLEIRRHHSATHLLQAALRNVLG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +  D LRFD +H KP+T  EL+ IE+ VN+ I +  P    IM+ ++A  S
Sbjct: 568 AHIAQAGSSVEADKLRFDFSHPKPVTKEELEKIENFVNEAILKGAPAKIEIMDIQNAKKS 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D+VRV+++        S  LCGGTHV +  EI   +IV ES + AG+RR
Sbjct: 628 GAIALFGEKYADKVRVLTLGP------SKELCGGTHVENLNEIGSFFIVRESGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A        +++  +   LK    + +  ++++ +E + LQ      K   N
Sbjct: 682 IEAVCSKAALELSKEFRKEINDIKDSLKG--ADPLLSIKKLKDEIKSLQND---LKNASN 736

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            +DL    + D+N +  ++S+ D   +KS +D L+ K    ++ L G+ K+ K S+    
Sbjct: 737 TKDL---DVKDINGVKVVVSKFDGD-IKSKIDELKNKFDKVVVFLAGV-KDGKVSL---G 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +        A +L +  A ++GGGGG GR   A +GG + +K D+A+     F+ +
Sbjct: 789 SGSKNTSIKAGELVKTVAPIVGGGGG-GRDDFATAGGKDESKIDEALNAATKFISE 843


>gi|262277414|ref|ZP_06055207.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262224517|gb|EEY74976.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 892

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/916 (44%), Positives = 580/916 (63%), Gaps = 47/916 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +   R TF  FF+KN H+++ SSSLIP NDPTLMF+NSGMV FKN+FTG EK  Y   
Sbjct: 3   KTLRDTRETFKNFFKKNDHKVISSSSLIPQNDPTLMFSNSGMVQFKNVFTGVEKRDYNRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+L+TK+F L 
Sbjct: 63  TTSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIAYAWELITKDFALP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L +TV+ ED+EA+ LWKKI+G S DKII+I T+DNFWSM ETGPCGPCSEIF+D GE
Sbjct: 123 KNKLCVTVFSEDQEAYDLWKKIAGFSEDKIIKIPTSDNFWSMGETGPCGPCSEIFYDHGE 182

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS  E+G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLERMA VLQ  
Sbjct: 183 HLFGGPPGSKDEDGDRFIEIWNLVFMQYEQISKDKRVNLPKPSVDTGMGLERMAAVLQGT 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY IDLF+ L+  S  +T  +   + I +HRVI DHLR+S FLIADG++P+NEGRGYV
Sbjct: 243 HDNYQIDLFQKLVDLSADITKTRINNDTIPSHRVISDHLRASCFLIADGLMPSNEGRGYV 302

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM +A  LG  + ++  ++  L  EM S Y EL +AK LI+ET+ +E+E+F  
Sbjct: 303 LRRIMRRAMRHANTLGSKDHVLSKMIDHLIKEMSSEYNELDRAKDLIKETITNEEEKFQS 362

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            L  G+ ++    + + K+  L+G+VAFKLYDT+G PLD+ +D      +  +D   FNQ
Sbjct: 363 MLSNGMKIIHDEKNKI-KNNTLSGEVAFKLYDTYGFPLDLTEDYFKPLKIK-VDTEKFNQ 420

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +E+++  AR    G GS + +KIWF LK+++G+T+F+GY                    
Sbjct: 421 LMEKRKQEARKSWKGSGSDSIDKIWFDLKDRHGSTEFVGYSS------------------ 462

Query: 481 PIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    + V +IV Q GE + +A    K++++ +QT FYAE+GGQ+GD+G    +  
Sbjct: 463 -----EKTEAKVNSIVNQDGEEILKAKEKDKIKIITNQTCFYAESGGQVGDSGIIKTETG 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ D QK    +F+H   V+ G +       L I+ + R  +  NHSATHLLH AL  
Sbjct: 518 TAEVEDTQKFFGSLFIHIGFVKEGYIEKNQDSYLEINLERRENIKSNHSATHLLHAALRE 577

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG+HV+Q GS + PD LRFD ++SK I S + K I   VN  I +N  V+TR+M+ E A
Sbjct: 578 ELGNHVAQRGSYVGPDRLRFDFSYSKQINSEQQKKINSRVNHFINKNDKVITRLMSPEKA 637

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I  GA AL G KY + VRVVS+   +  + S  LCGGTHV +TG+I    I++ESSI +G
Sbjct: 638 IKEGAMALFGEKYGEEVRVVSMGKNNDKIFSLELCGGTHVENTGKIGQFSIINESSIASG 697

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK---------- 769
           +RRIEA+ G   +++L  ++   +      K+    ++ +++++  +Y+           
Sbjct: 698 VRRIEALRGDELKTYLENKNLSKQENLKKNKLKFEEIINQIKKLKGDYKNFSEYQNEKQI 757

Query: 770 ------LQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                 L  + AK  L   N   ++ +    +  ++ I+  + SK+++ ++D   K   +
Sbjct: 758 NDALNYLNKLRAKNILDDKNKNIITSNSKNGIEIINQILIGLSSKDIRGLVDQGTKTKDN 817

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG--P 880
            II ++ + +++K S+ + ++++L +R++A + A+  +  LGG GGGGR   AQ+GG   
Sbjct: 818 TIIFIISL-EDQKTSIGVGISQNLTNRYDAANFAKKISIYLGGKGGGGRKDFAQAGGGTS 876

Query: 881 NGNKADQAIAGVASFL 896
              KA +A+  ++  +
Sbjct: 877 TLEKAKEALNKLSEEI 892


>gi|270294506|ref|ZP_06200708.1| alanyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270275973|gb|EFA21833.1| alanyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 872

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 500/918 (54%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVSGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G KY  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG+AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LL+  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKSTGKNEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVVDTKKE-NNLPIH--ITKKLPEHMEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    +   ++ L  L +    +  ++ G + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     + +VN +  I   + + ++ +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKVIKFCAPLPAETVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 QITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + AI  V   
Sbjct: 852 GGKNADGLNAAIDKVLEL 869


>gi|332087414|gb|EGI92542.1| alanyl-tRNA synthetase [Shigella boydii 5216-82]
          Length = 784

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/820 (43%), Positives = 500/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM  E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMALEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           ++SE   V+ K L++++D L+ ++ S II+L  ++ E K S++  V++D+ DR  A +L 
Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 779


>gi|116627351|ref|YP_819970.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|122268047|sp|Q03LZ8|SYA_STRTD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116100628|gb|ABJ65774.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
          Length = 872

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/913 (36%), Positives = 501/913 (54%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FDL
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+           
Sbjct: 417 FK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  IV      +   SGQ   +VF+QTPFYAE GGQ+ 
Sbjct: 463 -------------YEAETAESRLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G           ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 509 DHGTISDAAGTTVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
              LQ  +A  K K            + + N + +I S+V   D+  L++  D  ++   
Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L    +EK   ++   +E+     +A +L ++ A ++  G GGG+P+MA +GG +
Sbjct: 803 SDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPNMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            N     ++ VA 
Sbjct: 858 ANSIQDLLSAVAE 870


>gi|313895726|ref|ZP_07829282.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975852|gb|EFR41311.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 875

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/912 (36%), Positives = 514/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R T+L+FF +K  H  L S SLIP +DPTL+   +GM P K  FTG+ KP    
Sbjct: 4   MTGNELRETYLQFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPRPR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 64  ITTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y +D EA  +W +  GL  D I+ +  NDNFW +   GPCGP SEI+ D G
Sbjct: 120 PKEKLWVSIYPDDNEARAIWLEQPGLLPDHIVPL--NDNFWEIG-PGPCGPDSEIYIDLG 176

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  G   + +R++EIWNLVF Q+++  + E  +L   +IDTG GLER+A+V+Q
Sbjct: 177 EERGCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I  + +++G+ Y  +    ++ +VI DH RS S +I DGILP+NEG
Sbjct: 237 NKETNFETDLLYPIIAYASKISGVAYGSDKRKDISLKVIADHARSISVMIMDGILPSNEG 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+      A  + EL   +  I+  +R E
Sbjct: 297 RGYVLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVE 356

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+G +  L ++   +L GD+ FKLYDT+G P ++ ++IL   G+  
Sbjct: 357 EERFASTLAQGMELLNGEIGRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D + F++ +E QRSRAR+                                        D
Sbjct: 416 LDGVEFDKEMEAQRSRARSARA-----------------------------ENQVVAVPD 446

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +        +    ++V AI + GEIV+    G+   ++ D+TPFYAE GGQ+GD G
Sbjct: 447 LSNIDTSALRSDSTAKEAVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + I++ +K  +G   H A VE G +     + +T++ + +   + NH+ATHL
Sbjct: 507 VLRSDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G+HV Q GS +TPD LRFD T+ +P+T  +++ IE+ VN  I +++ +   
Sbjct: 567 LQAALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDIS 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M   DA   GA AL G KY D VRVVSV        S  LCGG+HV +TG+I L  I+ 
Sbjct: 627 MMPIADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIG 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG+ A S+       ++ ++  LK    ++  ++++  +E + +Q 
Sbjct: 682 ESGVAAGVRRIEAITGKAAFSYAATLYHTVQEISEKLKTRPEDLSSQIDKFLDERKAMQE 741

Query: 773 -----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                   + K       ++  +I   + +    +     EL+++ D   +K+  GI++L
Sbjct: 742 QLRQFAEFRDKADAQKLLMAVREIGAFHVVVGKANVDSMDELRTIADLACEKLDHGIVIL 801

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S+++   ++ +    +A  + + +AK +GGGGG GRP MAQ+GG       
Sbjct: 802 AAVI-DDKVSLVVKADKNAVSAGAHAGQIIKEAAKEVGGGGG-GRPDMAQAGGKTPENIP 859

Query: 887 QAIAGVASFLKK 898
           QA     S +++
Sbjct: 860 QAFDAAISVIQR 871


>gi|120611698|ref|YP_971376.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|205829963|sp|A1TRL4|SYA_ACIAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|120590162|gb|ABM33602.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
          Length = 948

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/933 (38%), Positives = 511/933 (54%), Gaps = 64/933 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           S+V+ IR +FL+FF   GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K  Y   
Sbjct: 8   SSVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  +++ AW+LLT+ + L 
Sbjct: 68  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWAWELLTEVYGLP 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
           + RL  TVY ED+EA+ +W K  GL  +++IRI  N       DNFW MA+TGPCGPCSE
Sbjct: 128 KERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 187

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  IPGG PGS  E+G+R+IEIWN VFMQF+         LP   +DTGMGLER+
Sbjct: 188 IFYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERL 247

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ   +NY+IDLF  LIQA+ + TG     N   + +VI DH+R+++FL++DG++P+
Sbjct: 248 AAILQHVHSNYEIDLFAALIQAAARETGTADLAN--PSLKVIADHIRATAFLVSDGVIPS 305

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYV RRI+RRA+ +   LG   P    L+  L  +MG AYP+L + +  I E L++
Sbjct: 306 NEGRGYVQRRIVRRAIRHGYKLGRKTPFFHSLVKDLVAQMGDAYPKLREQEQRITEVLKA 365

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ---DILCARGL 410
           E+ERF +TL  G+ LLD  L      + L        + + G    ++    D+  A  +
Sbjct: 366 EEERFFETLANGMDLLDSALDIQLASKALQNKTLRW-FASEGREEKLVSFKDDVQVAEAV 424

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW----------FSLKEKYGATQFIGY 460
              D +   + ++  +      +      +  + W          F L + YG    +  
Sbjct: 425 LISDELRSTEYMQRLKETVPGLNEVKTLHSVIRDWSGLTLPGDLAFKLHDTYGFPLDLTN 484

Query: 461 DLLRGSKFMKEDRKVL---------------------------CQKPPIDLTNGVSSIVK 493
           D+ R      ++                                 +         S+ + 
Sbjct: 485 DVCRERGVTVDEDGFKAAMDRQKAQARAAGKFKMDKALEYGGEANRFSGYDGLTESAKIV 544

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           AI   G   +   +GQ   VV D TPFYAE+GGQ+GD G     G R  + D  K    +
Sbjct: 545 AIYVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGVIHAGGARFAVDDTLKIRADV 604

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           + HH  +E G LR   ++   +D   R     NHS TH++H AL  +LGSHV Q GS + 
Sbjct: 605 YGHHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIMHKALREVLGSHVQQKGSLVN 664

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +  RFD  H+ P+T A+++ IE  VN+ I  N P   R+M+ E A  +GA  L G KY 
Sbjct: 665 AERTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARVMDIESAQKTGAMMLFGEKYG 724

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + VRV+ +        S  LCGGTHV+ TG+I L  +V ES + AG+RRIEA+TG  A +
Sbjct: 725 ETVRVLDIG------TSRELCGGTHVARTGDIGLFKVVGESGVAAGVRRIEAVTGAGALA 778

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKI 791
           +L   ++ +   A  L+     + GR+ +  E+ + L+   A  K KL  +  D    + 
Sbjct: 779 YLQQLEDTVAKAAGALRAPAAEITGRIGQALEQVKALEREVAALKGKLASSQGDELAGQA 838

Query: 792 ADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            DV  +  + +     D+K L+  MD L+ K++S  I+L  +    K  +   VT D + 
Sbjct: 839 VDVKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLAAV-DGAKVQIAAGVTPDAMA 897

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +  A +L    A  + GG GGG+P MA +GG +
Sbjct: 898 KVKAGELVNFVASQV-GGKGGGKPDMAMAGGTD 929


>gi|327461590|gb|EGF07921.1| alanine--tRNA ligase [Streptococcus sanguinis SK1]
 gi|327489449|gb|EGF21242.1| alanine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 872

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/916 (35%), Positives = 498/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESVFNYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLD-PLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|162453400|ref|YP_001615767.1| hypothetical protein sce5124 [Sorangium cellulosum 'So ce 56']
 gi|205830212|sp|A9FRF5|SYA_SORC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161163982|emb|CAN95287.1| alaS [Sorangium cellulosum 'So ce 56']
          Length = 917

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/923 (36%), Positives = 504/923 (54%), Gaps = 52/923 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFLEFF + GHE++PS+ L+P NDPTLMF N+GMV FK++FTG+++  YQ   + QK
Sbjct: 12  LRRTFLEFFAQRGHEIVPSAPLVPQNDPTLMFVNAGMVQFKDVFTGKDRRPYQRAASSQK 71

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+NVG T RH TFFEMLGNFSFG YFKE AI  AW+LLTK +D+   RL 
Sbjct: 72  CIRISGKHNDLENVGVTARHQTFFEMLGNFSFGDYFKEDAIAFAWELLTKVYDISPSRLV 131

Query: 127 ITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +T+Y        D+EA  +W+K++G   D+I+R+   DNFW+M + GPCGPCSEI F  G
Sbjct: 132 VTIYNGEGGFPADDEAAAIWRKVTGFGDDRILRLGLADNFWTMGDVGPCGPCSEIHFFHG 191

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGMGLERMATVL 237
           +       G     +G  + EIWN VFMQ+E+ +       LP  SIDTGMGLER+A+VL
Sbjct: 192 KEPDVARFGEEPRIDGTGWTEIWNNVFMQYERAEKDGPLVPLPAPSIDTGMGLERLASVL 251

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           Q  T+NYD DL + L+  + +++G  Y G   ++ V+ RVI DH R+++FLIA+G++P  
Sbjct: 252 QGVTSNYDTDLLRGLVDKAAELSGKPYSGGSADDDVSMRVIADHARTAAFLIAEGVMPEK 311

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           + R YVLRR+MRRA+ +   LG   P +  +   +   MG  YPEL   + LI      E
Sbjct: 312 QRREYVLRRVMRRAIRHGHRLGIDRPFLHEVALEVVRRMGETYPELRDRRELIARVTEDE 371

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           + RF  TL RG+ +LD     +       L    A  LY T+G PLD+ Q I        
Sbjct: 372 EVRFRSTLKRGMKILDERFDEMRSSGERTLPAAAAADLYTTYGFPLDLTQVISAESNF-D 430

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKE 471
           +D+      +   +    A      +   +      + K      F GY+   G     +
Sbjct: 431 VDVQGAEAII---KGAGEADGPIDPTAAVDPAHREARAKLAQPVVFTGYEHEEG-----D 482

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
              V   +  I      +  V+A+      VE A +G  VE+V  +TPFYAE+GGQ+GD 
Sbjct: 483 SEIVAIVRVEIQGEGDRARKVRAL------VERAEAGAAVEIVVRETPFYAESGGQVGDV 536

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    DG R+++ D QK   G+ VH  +V  G L     + L +D+  R     NHSATH
Sbjct: 537 GEVTADGARVEVKDTQKPLAGLVVHEGVVHEGALAVGQRVHLAVDHAARSATRRNHSATH 596

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +LH AL  +LG H  Q GS + PD LRFD TH++P+T  E+  IED VN+ +  N  V T
Sbjct: 597 VLHWALRKVLGEHAQQKGSRVGPDVLRFDFTHNRPLTREEISRIEDLVNEKVLTNAKVTT 656

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            I+  ++A   GA A+   KY D VR++++  E        LCGGTH  + G+I L  I 
Sbjct: 657 EILAMDEARRRGAMAIFEEKYGDTVRMLTMTPE-----VVELCGGTHACALGDIGLFKIT 711

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SE  + AG+RRI A TG  A ++  G + +L       K   G++  ++ +I    R+L+
Sbjct: 712 SEGGVAAGVRRILASTGLNALAYARGVEAELARARQVAKAQGGDLAEKIGKIVAHERELE 771

Query: 772 LIHAKRK---------------LQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDA 815
              A+ +                 ++        I  +  ++  +    +   L+ + + 
Sbjct: 772 KKVAELERRILEGAGPAQGGGGGGIDAMLDGARDIGGIKVLARRVPDGTNPGALRDLAEK 831

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L+ K+     +L+G +   KA + +++++   +R  A +L +  A+++ GG GGGRP MA
Sbjct: 832 LRDKLGDRSAVLLGAAVGDKAQLAVMLSKSATERLKAGELIKPIARIV-GGSGGGRPDMA 890

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG +  + D AIA + + +++
Sbjct: 891 QAGGTDVAQLDAAIAALYTEVER 913


>gi|189468166|ref|ZP_03016951.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM
           17393]
 gi|189436430|gb|EDV05415.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM
           17393]
          Length = 872

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/918 (36%), Positives = 504/918 (54%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEYLVEVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAAAFWEQ--HLPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRPEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTAYGKDNQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE+   T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKER--TTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D + R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPAHPEAPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  EDA   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    +   ++ LK L +    +  ++ G + +
Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKELKSVMDALQK 818
             EE    K Q+    R+ +  +++     + +++ +    I + + ++ +K++   L+ 
Sbjct: 733 YIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVIKICAPIPAESIKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + AI  V   
Sbjct: 852 GGKNIDGLNAAIEKVLEL 869


>gi|323352646|ref|ZP_08087616.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322121682|gb|EFX93428.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 872

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/916 (35%), Positives = 494/916 (53%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G   FKLYDT+G P+++ ++I    
Sbjct: 356 VKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDVFKLYDTYGFPVELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA ++  GS   +                          
Sbjct: 416 GMT-VDREGFEAAMKEQQERARASAVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +       + + S + AIV     VE    G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQNITVESVFNYNASQLPSKLVAIVADNAEVEAVSEG-TASLIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G       +L  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGKLVAQVTDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +              +     F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKDVQEANGHRFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|312277863|gb|ADQ62520.1| Alanyl-tRNA synthetase AlaS [Streptococcus thermophilus ND03]
          Length = 872

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/913 (36%), Positives = 500/913 (54%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FDL
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EEFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A ++Q    N++ DLF  +I+  E+++G  Y+ +   ++ +VI DH+RS +F I DG L
Sbjct: 237 LAAIMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+           
Sbjct: 417 FK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  IV      +   SG K  +VF+QTPFYAE GGQ+ 
Sbjct: 463 -------------YEAETAESRLSVIVADDARHDSVNSG-KALLVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G           ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 509 DHGTISDAAGTTVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY  RVRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LKS+A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQ 821
              LQ  +A  K K            + + N + +I S+V+   +  L++  D  ++   
Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSAAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L    +EK   ++   +E+     +A +L ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIREKVNVLVASKSEN----VHAGNLIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            N     ++ VA 
Sbjct: 858 ANSIQDLLSAVAE 870


>gi|29833392|ref|NP_828026.1| alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|41018194|sp|Q827S4|SYA_STRAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29610515|dbj|BAC74561.1| putative alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
          Length = 890

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/923 (36%), Positives = 509/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L F+++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFYEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA  +W+   G+ A++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYLDDDEAETIWRDKIGVPAERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+              LP+ +IDTG+G+
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKDDFEILGDLPQKNIDTGLGM 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +IQ + ++TG++Y     + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIQKATELTGVEYGAAHGSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDVVIAMMGQQYPELISDRQRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++       ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETKASGGQVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQSKKTGHADLGAYREIADAAGETDFIGYTQTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    + G  +++ D QK   G++VH  +V+ G +       ++ID + R+ ++
Sbjct: 511 GQIGDTGRIKVESGAIIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQVSIDVRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +  +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTTVMTDVEQQINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  +   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQIQELVKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    + + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIERFRAEKVLQAAAGLVDSAKDVRGIALVTGQVPDGTTADDLRRLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ +  +   K   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRPAVVALFTTVGGKPLTVIATNEAARERGLKAGDLVRAAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +AI  V   + +
Sbjct: 865 QGGGQNPAAIGEAIDAVERLVTE 887


>gi|15675313|ref|NP_269487.1| alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910945|ref|YP_282495.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|20532260|sp|Q99Z57|SYA_STRP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13622492|gb|AAK34208.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71853727|gb|AAZ51750.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 872

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  +
Sbjct: 858 ASKIAELLAAVAEIV 872


>gi|325690091|gb|EGD32095.1| alanine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 872

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/916 (35%), Positives = 496/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + F 
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    +   +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDVAGNLVAQVTDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKDVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|302335910|ref|YP_003801117.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084]
 gi|301319750|gb|ADK68237.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084]
          Length = 880

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/910 (38%), Positives = 514/910 (56%), Gaps = 54/910 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF+  G  L PSSSL+P  DP+L+ TN+GM  FK  + G +       
Sbjct: 8   MTTAEIREDYLRFFESKGCRLYPSSSLVP-EDPSLLLTNAGMNQFKEYYQGTKTMREIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND+DN+G  +RH +FFEMLGNFSFGGY K  AI  AW+ +T  +   
Sbjct: 67  TSCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKADAIAWAWEFITAAEHLG 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY+TV+++D+EA +LW    G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 122 LPKDRLYMTVFEDDDEAIELWHA-QGVAYDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 180

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  PG  ++GERY+E WNLVF Q+++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 181 GPAFEGERPG--DDGERYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +NY+ D+ + LI   EQ+ G++Y        + R++ DH R+ +F+I DGILP+NEGR
Sbjct: 239 EGSNYEGDVLRTLIGVGEQLAGVRYREGAATDTSLRILADHSRAVTFMIGDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + RL+G     +      +   M   YP+L++ + LI+  + +E+ER
Sbjct: 299 GYVLRRLLRRAVYHGRLMGVHGSFLPTYAHEVTRLMADVYPQLVENQALIDGIISAEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           FG TLD G   L   L  L   E L+G+VAF+L+DT+G P+D+ ++I  A G   +D+ +
Sbjct: 359 FGATLDAGEGNLTAALGRLDAGEALSGEVAFRLHDTYGFPIDLTREIAAAAG-HEVDMAA 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+ A+ +QR RAR  +     G +  +W SL ++ G T+F GYD                
Sbjct: 418 FDGAMAKQRERARQAANRDAWGASNNVWVSLSDRLGETEFCGYDE--------------- 462

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V AIV+ G  V+ A  G+ VEVV D+T FY E GGQ GD+G  + +
Sbjct: 463 -------DTVEGARVLAIVRDGSEVDVACRGEHVEVVLDRTSFYGEMGGQQGDSGKLVCE 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L ++D + +  G   H   V  G LR   S+   ID+  R  +  NH+ATHLL  AL
Sbjct: 516 DATLAVSDAKHRDGGFVSHVGEVTAGELRVGESVRAVIDHGRRELIRRNHTATHLLDAAL 575

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS + P  LRFD TH + +++ E+  +E  VN  I    PVVT +M  E
Sbjct: 576 KRVLGDHVSQAGSLVGPSRLRFDFTHFEAMSAEEMARVEGMVNAEIFAAEPVVTTVMGIE 635

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A ASGA AL G KY D VRVVS    D    S  LCGGTH  +T E+ L  IVSE S+ 
Sbjct: 636 EAKASGAVALFGEKYGDVVRVVSTGASD-EPFSRELCGGTHARNTAELGLFKIVSEGSVG 694

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + +RR+EA+T   A  +L  +  ++  +A+ L+    +V  RVE++     K +    + 
Sbjct: 695 SNVRRLEAVTSMGAIEYLDERLAQIDQVAAGLRCRPSDVAARVEQL-----KAEKAETEH 749

Query: 778 KLQLNVEDLSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           KL+  +   S + +AD             +   +  V  KEL+S  D+++ ++      +
Sbjct: 750 KLRAALTGGSSNAVADAIASAIDRGAYRLVLARLDGVSGKELRSAWDSVRDRLGVDCACV 809

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +    + K  +L   T+  +   F+A D+ R  A ++GG GG G+P MAQ+GG + +  D
Sbjct: 810 LASESDGKVGLLAAGTDGAVSAGFSAGDIIRSVAGLVGGRGG-GKPAMAQAGGSDPSGID 868

Query: 887 QAIAGVASFL 896
            A+      L
Sbjct: 869 AALEEAGRLL 878


>gi|195953907|ref|YP_002122197.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933519|gb|ACG58219.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 856

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/903 (35%), Positives = 506/903 (56%), Gaps = 53/903 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+  GH ++ SSS++P +DPTL+F N+GMVPFKN+F G E   Y+  
Sbjct: 1   MKTDEIREKFLSFFENKGHTVVKSSSIVPKSDPTLLFVNAGMVPFKNVFLGLESLPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC R  GKHNDL++VGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L 
Sbjct: 61  TSCQKCFRVSGKHNDLESVGRTTRHHTFFEMLGNFSFGDYFKKEAILYAWEFVTEVLRLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + ++Y++V+  D+EA+ +WK +  +  DKI R+   DNFW M ETGPCG  SEI+ D+GE
Sbjct: 121 KDKIYVSVHQNDQEAYDIWKDMVKVPEDKIWRMGDEDNFWQMGETGPCGYSSEIYIDRGE 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                      + ERY+EIWNLVFMQF +        L K SIDTGMGLER+A+V+Q K 
Sbjct: 181 KY--------SQDERYLEIWNLVFMQFNKDESGHMEPLAKPSIDTGMGLERIASVIQGKD 232

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           +N++ID+   +I   E ++  +Y  +    +  RVI DH R+ +  I++GI+P+NEGRGY
Sbjct: 233 SNFEIDIIMPIIHFVEDLSSKRYKTDEETDIAMRVIADHSRACTVAISEGIIPSNEGRGY 292

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+R+++RRA+ +   +G  E  +   +  +   + +AYPEL  +K  ++  +++E+ RF 
Sbjct: 293 VVRKVLRRAVRFGYKIGIKEEFLYKSIDVVVDTLKNAYPELEMSKEFVKNIIKAEESRFL 352

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+  L L D  ++   K  +++GD  FK YDT+G PLDI+Q++   +G+  +D+  F 
Sbjct: 353 ETLENSLELFDRYIAE-NKSNVISGDFIFKAYDTYGFPLDILQEMTHEKGMT-LDMKGFY 410

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + LE+Q+  +R H         ++++ S+K+K   + F GY                   
Sbjct: 411 ELLEKQKEESRKHFK--SEEKVDEVYLSIKDK-ARSIFTGY------------------- 448

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I++ G++ EE    +   ++ ++TPFY E GGQ+GD+G       
Sbjct: 449 ----THTEEQAKVLFIIKDGKMTEELKEQEDGIIILNKTPFYPEKGGQIGDSGILENSEA 504

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + D +   +G+  H   V +G LR    ++  ID + R  +  +H++THLLH AL  
Sbjct: 505 LFIVNDTKTPTDGVIAHIGKVIKGRLRVGTDVLAKIDKERREDIKRHHTSTHLLHAALRN 564

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           + G  V Q GS +  + LRFD T  + +   EL+++E  +N+ I +N  +  + +  ++A
Sbjct: 565 MFGESVRQAGSYVGDEFLRFDFTFYRSLKPEELEALEAMINEEIMKNEEIFVKELPYQEA 624

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA A+   KY D VRV+S      G  S  LCGGTHV  TG+I    ++SESS+ AG
Sbjct: 625 IKTGAIAIFEEKYGDVVRVIS-----AGDFSKELCGGTHVKRTGDIGYFKLISESSVGAG 679

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----LQLIHA 775
           IRRI A  G++A        + LK++   +  ++ N++ RV  + EE ++    +Q++ +
Sbjct: 680 IRRIIAKAGRKAVREAYEDSKLLKTIYQEIGANKQNLLERVIALKEELKEKDNQIQMLKS 739

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K         L+  +I  +     I+ E     L+ + D+ + +  + ++ LV  S   K
Sbjct: 740 KLVRLEAKASLNIEQINGIKLYWGILEEASLDNLREIADSYR-QHPNTVVFLVSKSP--K 796

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            S+LI  ++DL     A  + +  AK +  G GGGR  +AQ G       + A+  + S 
Sbjct: 797 KSILIARSKDLNYDMKA--IIKDIAKPME-GSGGGREDLAQGGVQKIETFNSALEVLKSI 853

Query: 896 LKK 898
           L K
Sbjct: 854 LSK 856


>gi|254415207|ref|ZP_05028969.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196178013|gb|EDX73015.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 877

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/904 (37%), Positives = 506/904 (55%), Gaps = 50/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ K  H++LPS+SL+P +DPT++ T +GM+PFK IF GQ +  +   T
Sbjct: 9   SGNQIRQKFLDFYDKRQHQVLPSASLVP-DDPTVLLTIAGMLPFKPIFLGQRQSDFSRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T  F+L  
Sbjct: 68  TSQKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTNVFELPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ ED+EAF +W+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 124 ERLIVSVFREDDEAFAIWRDKIGIPAHRIQRMGEEDNFWASGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTG+GLERMA +LQ+  N
Sbjct: 184 K-GDKDIDLEDDTRFIEYYNLVFMQYNRDADGNLTPLQNKNIDTGLGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y   +    V+ +VI DH+R+   LIADGI  +N GRGY
Sbjct: 243 NYETDLIFPIIKTAAEIAELDYAKSDEKTKVSLKVIGDHIRAVVHLIADGITASNIGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G        +           YP + +    I+  L+ E+ +F 
Sbjct: 303 ILRRLIRRVVRHGRLIGIQGEFTTQVADTAIALAEDTYPNVRERNDAIQAELQREESQFR 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL RG  LL  +L+   K E ++G  AF LYDTHG PL++ Q+I    GL  +DI  + 
Sbjct: 363 KTLARGEKLLADILAQ--KPEQISGRDAFTLYDTHGFPLELTQEIAEEHGLT-VDIAGYE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A++EQ+  ++A    +     +     +     AT+F+GY +                 
Sbjct: 420 AAMKEQQENSQAAHETVDL-LAQGSLDEVTSGVAATEFLGYTVPAT-------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A+V +GE VE A +G +V+VV DQTPFYAE+GGQ+GD G   GD +
Sbjct: 465 ---------TAQVMALVAEGESVESAQTGTEVQVVLDQTPFYAESGGQIGDRGYLSGDNL 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV+K+++  FVH   VERG L    ++   ID   RR+   NH+ATHLL  AL  
Sbjct: 516 VVRIDDVKKESD-FFVHFGRVERGTLNLGDTVTAQIDRACRRRAQANHTATHLLQAALKK 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD   S+ +TS EL  IED +N  IA+       IM   DA
Sbjct: 575 IVDPSISQAGSLVAFDRLRFDFNCSRSLTSEELTQIEDQINTWIAEAHGADVAIMPLTDA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY D VRV+          S  LCGGTHV++T EI +  IV+E+ + +G
Sbjct: 635 KAKGAIAMFGEKYADEVRVIDFPG-----VSMELCGGTHVNNTAEIGVFKIVAETGVASG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KR 777
           IRRIEA+ G     +L  +D+ +K L+   KV    +  R+  +  E +  Q      K+
Sbjct: 690 IRRIEAVAGPAVLDYLNLRDKVVKELSDRFKVKPEEIPDRITNLQNELKASQKELEAVKQ 749

Query: 778 KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L L   D        + +   +   + +++   LK+  + LQ+K+    ++L  +  E 
Sbjct: 750 ELALAKSDQVLSQAESVGEFKVLVANLGDIEPDALKTAAERLQQKLGDSAVVLGSVPTEG 809

Query: 835 KASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  +    +  A       AK+ GGGGG GRP++AQ+GG + +K  +A+   
Sbjct: 810 KVSLVAAFSAKIYKDKQLQAGKFIGGIAKLCGGGGG-GRPNLAQAGGRDASKLPEALDAA 868

Query: 893 ASFL 896
              L
Sbjct: 869 KRQL 872


>gi|282856374|ref|ZP_06265653.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282585745|gb|EFB91034.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 882

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/898 (36%), Positives = 498/898 (55%), Gaps = 48/898 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  F+ F++  G     S SL+P +DP+L+FT +GMVPFK  + G E+P Y    
Sbjct: 5   SGKEIRQLFVSFWESKGCHHYKSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPEYARAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFS+GGYFK  ++   W+ LT+   LD 
Sbjct: 64  TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGGYFKRESLTWGWEFLTQVLGLDG 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+Y T+Y +D EAF +W K  G+    ++    ++NFW M   GPCGP SEI +DQG+ 
Sbjct: 120 SRMYATIYKDDREAFDIWTKEIGMPESHLVLNGEDENFWFMGPQGPCGPDSEILYDQGKE 179

Query: 183 IPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G       + +R++EIWN VF Q+++Q       LP+ +IDTGMGLER+A+++Q   
Sbjct: 180 FSCGPDCHPGCDCDRFLEIWNHVFTQYDRQADGSFKPLPRKNIDTGMGLERLASLIQGVR 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           N+++ DLF  L++ +  + G++Y  N+   +  +VI DH+R+  F+IADGILPAN+G+GY
Sbjct: 240 NDFETDLFAPLMKKAGDIAGVRYGENDQSDLALKVISDHVRAVCFMIADGILPANDGQGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  Y RL+G   P +  ++PA+   MG  Y EL + +L IE+ +  E+  FG
Sbjct: 300 VLRRLIRRAARYGRLIGIDRPFINDVIPAVIELMGDPYAELGENRLTIEKIVEIEENGFG 359

Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KT+ +G  LLD  +        + L G VAF+LYDT G PL++ ++I    G++ +D   
Sbjct: 360 KTIRQGSELLDAEVKAALESAGKTLGGAVAFQLYDTFGFPLELTREICAEHGVS-VDEEG 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +  QR RAR+ S  + +   +  ++ +L  ++GAT F+GY+               
Sbjct: 419 FKTEMARQRKRARSSSKQIANNVIKGNVFNALANEFGATDFVGYEKSE------------ 466

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       ++ ++A+V+ G  V+    G++  V+ + +PFYAE GGQ+GDTG    
Sbjct: 467 -----------CNTKIRALVRDGRKVDALDEGEEGMVLLESSPFYAERGGQIGDTGLIKA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+   + D       + +    V +G LR    ++  ID      ++ NH+ATH+LH  
Sbjct: 516 DGVLAVVKDSTHPFGELNMQTVTVTKGALRVGQGVLAQIDMDRHLAIARNHTATHILHAV 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV QNGS ++   LRFD TH +     +L+ IE   N  I  + PV T + + 
Sbjct: 576 LGKVLGGHVRQNGSLVSDRFLRFDYTHYEAPRREQLEEIETLTNAAILTDRPVTTVVTDL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A ASGA AL   KY   VRVVSV     G  SS LCGGTHV S+G I  L IV E SI
Sbjct: 636 EAAKASGAKALFEEKYGQTVRVVSV-----GDFSSELCGGTHVPSSGTIGSLKIVGEESI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---I 773
            +GIRRI A+TG      L         L++ L V +  ++ +V+ + EE + L+     
Sbjct: 691 GSGIRRITAVTGMTTVRLLQELSRTADELSTRLAVKRPLLIEKVKGMEEEIKALKRQIDE 750

Query: 774 HAKRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            ++ +L  +++ L   K      VN     +   D   L+   D  +      + ++   
Sbjct: 751 MSRAELAGSIDGLIAKKTLAGGAVNLYIGRVDGQDMDLLRESGDKFKDGDPKAVFVIFSK 810

Query: 831 SKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           + E K  +L ++ E+    + +A  + +  A ++ GG GGGRP+MAQ+GG    K D+
Sbjct: 811 AAEDKVQILCMLGEEAQKKKLHAGRIVKELAALV-GGSGGGRPNMAQAGGREPGKIDE 867


>gi|28895717|ref|NP_802067.1| alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|73919472|sp|Q878X3|SYA_STRP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28810966|dbj|BAC63900.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
          Length = 872

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  +
Sbjct: 858 ASKIAELLAAVAEIV 872


>gi|123967582|ref|YP_001008440.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|205830182|sp|A2BNH2|SYA_PROMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123197692|gb|ABM69333.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 886

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/908 (34%), Positives = 501/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W    G+  D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSVFHEDEESAKIWSDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K N
Sbjct: 186 K-GLQNIDLEDGDRFIEFYNLVFMQYNRDPNGKLTDLKFKNIDTGMGLERMAQILQKKQN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ   ++  + Y   +  N ++ ++I DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVSASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++  +I     ++ +D+  F 
Sbjct: 365 ETLERGEKLLDELIS--SGQKLISGFKAFELYDTYGFPLELTVEIAEEHSIS-VDVKGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +   T E       + +  T F GY  L                
Sbjct: 422 EEMNVQKERAKAASSNIDL-TLEGSLEREIDVFNKTVFNGYKSL---------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I     +V+EA  GQKV +V DQT FY E+GGQ+GD G    + +
Sbjct: 465 -------LSEAEIKGIFLDSTLVKEASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSNDV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + +V +K   +F+H+  +++G L     +   +   NR + + NH+ATHLL  AL +
Sbjct: 518 EVLVDNVMRKKN-VFLHYGTIKKGKLTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKS 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +A
Sbjct: 577 VINESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHSLEIKNMSKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV+V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831
           ++          S   +   + + + I  +D   L+S    L   + +  I+++G     
Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   ++ + +D +    +A  L    A++  GG GGG+P+ AQ+G  + +K   A+ 
Sbjct: 812 ENRKLLFVVSLGDDAVKIGLHAGKLINEIARICSGG-GGGKPNFAQAGAKDIDKLSDALD 870

Query: 891 GVASFLKK 898
              ++L+K
Sbjct: 871 YAKNYLQK 878


>gi|320546404|ref|ZP_08040719.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448789|gb|EFW89517.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 891

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 24  TSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 83

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  + FD 
Sbjct: 84  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPEWFDF 139

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 140 PKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 195

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 196 EDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 255

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 256 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 315

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 316 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFIEKIV 375

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++   +G
Sbjct: 376 KREEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELAEDKG 435

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS + +    S                      
Sbjct: 436 FK-IDHAGFEAAMKEQQERARASVVKGGSMSMQNETLS---------------------- 472

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                +  +         + S +  I+   E  E    GQ   +VF +TPFYAE GGQ+ 
Sbjct: 473 ----NITEESVFSYEEEVLDSTLSVIIADNECTEAVSEGQ-ALLVFAKTPFYAEMGGQVA 527

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R  +  NH
Sbjct: 528 DHGVIKNDKGDIVARVTDVQKAPNGQALHTVEVL-ASLSVGTTYTLEIDSKRRHSVIKNH 586

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 587 TATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIWNAI 646

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV+T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI +
Sbjct: 647 PVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 701

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      ++E LK++A  LKV Q   V  +V  + E+
Sbjct: 702 FKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSLQEQ 761

Query: 767 YRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +   K K            + + N +  I S+V   D+  L++  D  ++K  
Sbjct: 762 LHKLQKENAELKEKAAAAQAGDVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQKDY 821

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 822 SDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKTLAPIVS-GRGGGKPDMAMAGGSD 876

Query: 882 GNKADQAIAGVASFL 896
             K    +A VA  L
Sbjct: 877 AAKIADLLAAVAENL 891


>gi|260654150|ref|ZP_05859640.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260631135|gb|EEX49329.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 879

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/905 (39%), Positives = 511/905 (56%), Gaps = 45/905 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  F++F+   G    PS SL+P +DP+L+FT +GMVPFK  + G E+P  ++ 
Sbjct: 1   MSGKDIRRKFIDFWVSKGAHHFPSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPPVKSA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR     ND++NVG T RHHTFFEMLGNFS+GGYFK  ++   W+ LT+   LD
Sbjct: 60  VTSQKCVRT----NDIENVGHTARHHTFFEMLGNFSWGGYFKHESLTWGWEFLTQVIGLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+Y T+Y +DEEA+K+W    GL+ D I+R    +NFW M   GPCGP SEI +DQGE
Sbjct: 116 GSRMYATIYKDDEEAYKVWHDEIGLADDHILRCGEEENFWFMGPQGPCGPDSEILYDQGE 175

Query: 182 CIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G       + +RY+EIWN VF QF++Q       LP+ +IDTGMGLER+ +++Q  
Sbjct: 176 KFSCGPNCHPGCDCDRYLEIWNHVFTQFDRQEDGSMLPLPRKNIDTGMGLERLTSLVQGV 235

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           TN+++ DLF  LI+    ++G+ Y  +    +  +VI DH+RS  F++ADGILP+NEG G
Sbjct: 236 TNDFETDLFLPLIRKVTDLSGVAYGSSAAGDLALKVISDHIRSVCFMLADGILPSNEGPG 295

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ Y RL+G   P +  LLP + +EM   Y EL +++L I + +  E+ RF
Sbjct: 296 YVLRRLLRRAVRYGRLIGIDRPFLNDLLPVVVSEMSDPYAELAESQLTIRQIIDVEENRF 355

Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G+TL +G  LL+  +    K   + L GDVAF+LYDT+G PL++  +I   + L  +D  
Sbjct: 356 GRTLSQGCALLNDEIDRAVKAGSKTLAGDVAFQLYDTYGFPLELTTEICSEKNLT-VDES 414

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F   + +Q+ RAR  S  +G   T   + +L+ + G   F+GYD L  S          
Sbjct: 415 EFKAQMTQQKDRARKASKQVGVVITGDAFTALQNRLGTVPFVGYDALSSS---------- 464

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        S +  +V  G +V+   +GQ  + V   TPFYAE GGQ+GDTG    
Sbjct: 465 -------------SQIVGLVCDGALVDRLETGQSGQAVVTPTPFYAERGGQVGDTGTLTA 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 +T    +A  + V    V  G L T+  +  ++D + R  ++ NH+ATHLLH A
Sbjct: 512 VRTEAAVTGCFYRAGDLSVLDITVNSGALETDQFVTASVDKERRAAITRNHTATHLLHQA 571

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV QNGS ++P+ LRFD TH + +T  +++ +E   N  +  N+PV T  MN 
Sbjct: 572 LIDVLGGHVRQNGSLVSPEFLRFDYTHFEAMTPEQIRQVETLANRKVLANMPVDTEQMNL 631

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            DA A GA AL   KY D VRVVS      G  S  LCGGTHV +TGEI L+ IVSE SI
Sbjct: 632 ADAKAKGAKALFEEKYGDVVRVVS-----AGDFSCELCGGTHVGATGEIGLVKIVSEESI 686

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA- 775
            +G+RR+ A+TG  +          L++LA    V    VV +V  + +E ++L    A 
Sbjct: 687 GSGVRRLTAVTGMNSYDMFDKASSALRTLAQKFNVRPEGVVEQVVALEQENKELARQLAD 746

Query: 776 --KRKLQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             K  L   ++      ++      S  I  V    ++   D ++ K    +++ +G ++
Sbjct: 747 KVKSDLAGRLDGGIARTELDGCCLCSARIDGVPMDMMREAGDRVKDKEPRSVVVFMGQTE 806

Query: 833 EKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K  +L +V  E L   ++A  + +  A ++GGGGG GRP MAQ+GG +  K DQA+A 
Sbjct: 807 EGKVQILCMVGAEALKAGYHAGKIVKALAGLVGGGGG-GRPDMAQAGGRDCAKIDQALAD 865

Query: 892 VASFL 896
               +
Sbjct: 866 AEGIV 870


>gi|299144219|ref|ZP_07037299.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518704|gb|EFI42443.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 874

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/916 (37%), Positives = 546/916 (59%), Gaps = 62/916 (6%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR+ +L FF+   H +LPS SLIP ND +L+   +GM P K  FTG+  P  
Sbjct: 1   MKNLKLHEIRSLYLNFFESKQHLMLPSFSLIPKNDKSLLLIGAGMAPMKKYFTGELTPPS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKCVR G    D++NVG+T+RH TFFEMLGNFSFG YFK  AI  AW+ LT++ 
Sbjct: 61  RRVTTCQKCVRTG----DIENVGKTDRHATFFEMLGNFSFGDYFKREAITWAWEFLTEQI 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L++TVY ED+EAF++W +   +  ++I+++  +DNFW + E GP GPCSEI+ D
Sbjct: 117 EISKDDLWVTVYHEDDEAFRIWNEEIKVPKERIVKLGKDDNFWEL-EVGPSGPCSEIYVD 175

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G        + +R+IE+WNLVF QF++        L   +IDTGMGLER+ATV
Sbjct: 176 RGEAYGCGDKNCKPGCDCDRFIEVWNLVFTQFDKDESGVYHPLKNPNIDTGMGLERLATV 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294
           +Q   N ++ID  + +I+  E+++G KYE +  ++   RVI DH+R+ +F+I+D I P+N
Sbjct: 236 VQHTNNIFEIDAIQDIIREIEKISGYKYETDKKLDESVRVITDHIRAMTFMISDTIRPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRS 353
           EGRGYVLRR +RRA  + R+LG  +  +  L   +    G   YPELI+ +  I+  +++
Sbjct: 296 EGRGYVLRRFIRRAARHGRILGIKKSFLSELSDLIINSWGADYYPELIENRDNIKSVIKA 355

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E+F +T+++G+ +L+  +  L + +  IL+G+ AFKLYDT+G P+D+  +IL    + 
Sbjct: 356 EEEKFLETIEQGMSMLESHILDLKEKKLDILDGEYAFKLYDTYGFPVDLTAEILDENSIK 415

Query: 412 GIDIISFNQAL-----EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +D   F++ +       + +R  + ++G GS   EKI+  LK      +F+GY+     
Sbjct: 416 -LDRDGFDKNMDAQRKRARAARDDSDNIGWGSHDNEKIYEGLKN-----EFVGYE----- 464

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              +   + +  +V+  E+V++   G++  ++ D+TPFYAE+GG
Sbjct: 465 ------------------KDECKANIIELVKLNELVDKLTKGERGIIILDKTPFYAESGG 506

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q GDTG    D  ++++ D +K  +G+ +H   VE GI+     +   ID   R  +  N
Sbjct: 507 QAGDTGIIESDKFKIKVIDTKKNVKGLHLHMVEVEEGIVEK-SEVSAKIDVIRRFNIRRN 565

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THLLH AL  +LG+HV+Q GS +  + +RFD TH + I   +L+ IED VN  I + 
Sbjct: 566 HSVTHLLHKALKEVLGNHVNQAGSEVLDNRMRFDFTHFEAIDKEDLQKIEDRVNQKIFEA 625

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV T I N EDA   GA  L   KY+  VRVV++     G +S  LCGGTHVS+T EI 
Sbjct: 626 LPVKTTITNPEDAYKLGAVGLFEEKYSSVVRVVTM-----GDYSMELCGGTHVSNTSEIS 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           +  I+SE+ I +G+RRIE+ITG    S+L   +      AS LK ++ +++ +++ + E 
Sbjct: 681 MFKIISENGISSGVRRIESITGPAVYSYLNNLENLRDESASTLKSNKSDIIQKIKLLTEN 740

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  +    + KL+   +++     +  KI  +N++++  +EVD   L+++ D +++K+ 
Sbjct: 741 VKAYEKQIEELKLKTAKDEVSEIIKNVKKINSINYVTYRFNEVDVNTLRNLADEVREKVG 800

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           S +++L     + K + +  V++DL+  + +A ++ +  AKV GGGGG GRP MA +GG 
Sbjct: 801 S-VVVLFATEIDDKVNFVCAVSQDLVKQKISAGNIVKEVAKVTGGGGG-GRPDMATAGGK 858

Query: 881 NGNKADQAIAGVASFL 896
           + +K D A+  + + L
Sbjct: 859 DASKIDLALEEIKNIL 874


>gi|269216088|ref|ZP_06159942.1| alanine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269130347|gb|EEZ61425.1| alanine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 901

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/917 (36%), Positives = 504/917 (54%), Gaps = 61/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT--GQEKPVYQ 59
              + IR  +L FF++ G + LPSSSLIP +DP+L+ T++GMV FK  F    +  P Y 
Sbjct: 22  MTTAEIREKYLRFFEEKGCKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPNYI 80

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFK      A++  T+  +
Sbjct: 81  GATTVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGVYFKHEMCTWAYEFSTEVLE 136

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY TV+++D+E  ++WK + G+    I R+  +DNFW    TGPCGPCSEI+FDQ
Sbjct: 137 LPKDRLYFTVFEDDDETIEIWKSL-GVLESHITRLGEDDNFWRAGPTGPCGPCSEIYFDQ 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  PG  ++G+R++E WN VF QF+ Q       LP  +IDTGMGLERMA ++Q 
Sbjct: 196 GPDFEGDAPG--DDGDRFLEFWNCVFTQFDGQEDGTLAPLPTKNIDTGMGLERMAAIMQG 253

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN------------IVNHRVIVDHLRSSSFLIA 287
             +NY+ D+ + L+   E+++G  Y G               ++ R+  DH RS +F+IA
Sbjct: 254 VQSNYETDVLRDLVAVGERLSGASYRGGTNATAGDGAQAKVDLSLRICADHSRSVAFMIA 313

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DGILP+NEGRGYVLRR++RRA+ +   LG   P +   L  +   MG  YPE++  + L+
Sbjct: 314 DGILPSNEGRGYVLRRLLRRAVMHGHKLGIEGPFLGEYLAKIIELMGDVYPEIVDNRELV 373

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E  + SE+ERFG+TL  G   L   LS L    +L G  AF L+DT+G P+++ ++I   
Sbjct: 374 ERIILSEEERFGRTLRTGQAYLVDELSAL-DGSVLPGQTAFTLHDTYGFPIELTEEICSE 432

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLR 464
            G+  +D   F+  +EEQRSRARA + G           +     ++ GA  F+GY+   
Sbjct: 433 SGVT-VDHAGFDACMEEQRSRARAATKGDAEAAWSTYGGVHAETLKEVGANIFVGYEHTE 491

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +S + A+++ G  V     G++ E+V  +TPFYAE 
Sbjct: 492 -----------------------AASSIVALIKDGARVARIEQGEEAELVLAKTPFYAEM 528

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GG++GDTG   G G   Q+ D +    G+  H   V +G L     +   +D   R +++
Sbjct: 529 GGEVGDTGTIEGAGGYAQVEDTKAPEAGLICHRVKVVKGSLSVGEDVAAAVDADRRARIT 588

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATH+LH AL  +LG HV+Q GS + PD LRFD  H  P+T+ E+K +ED  N +I 
Sbjct: 589 RNHTATHILHAALRQVLGDHVNQAGSYVGPDRLRFDFAHFAPMTADEIKQVEDLANAVIM 648

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               +     + ++A ASG  AL G KY D VRVV     + G  S  LCGG HV +T E
Sbjct: 649 SATDMNIYETSLDEARASGVTALFGEKYGDTVRVV-----EAGGFSRELCGGCHVRNTAE 703

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I LL +V+E+S+ A  RRIEA+T   A  +L  +  +L + AS LK +  +V  RV    
Sbjct: 704 IGLLKVVAETSVAANTRRIEAVTSYAALDYLNTRAAELDAAASALKSAPLDVAARVAANL 763

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKI 820
              ++ +    + K      D S +  A V+     +   +  +D   +++V D ++ ++
Sbjct: 764 ATIKEFEAEARRAKQAAAESDASAYLDAMVDVGYPLIVIRVDGLDGGAMRNVWDVVRARM 823

Query: 821 QSGIIMLVGISKEKKASVL-IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
                +++G   + K  ++     E +   FNA D+ + ++  + GG GGG+P MAQ+GG
Sbjct: 824 PKPGALVLGAVTDGKPIIMAAASDEAVAAGFNAKDVIKQASSHIKGG-GGGKPTMAQAGG 882

Query: 880 PNGNKADQAIAGVASFL 896
            + +  D A+    +FL
Sbjct: 883 KDASGMDAALEAARAFL 899


>gi|189463200|ref|ZP_03011985.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136]
 gi|189430179|gb|EDU99163.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136]
          Length = 872

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+A   ++G KY  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKAIGDLSGKKYGDDEKVDVTMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLLPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G P D+ + 
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLDKTMAETKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   GL   D+  F   +++Q+ RAR       +      W +LKE  G T F+GYD  
Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + I D +K+   + +H A  ++     E  ++  +D   R   
Sbjct: 503 SGGQIGDTGVLVSEFETIDIIDTKKE-NNLPIHIA--KKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TPD LRFD +H + +T  +++ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGAHVEQKGSLVTPDSLRFDFSHFQKVTPEQIREVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AGIRRIEA+TG +         + +  L +    +  ++   + +
Sbjct: 674 GKIGMVKIISESSVAAGIRRIEAVTGAKVEEMFDTVQDAINDLKALFNNAP-DLKAAISK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    ++ +  V++       ++N +  I  +  + +  +K++   L+ 
Sbjct: 733 YIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIQAVLPMPADAVKNIAFQLKG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +    + +++G   E K  + + +++D +    NA  L R +AK++ GG GGG+PH A +
Sbjct: 793 QFPENLFVVIGSVFENKPLLTVTMSDDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  + S 
Sbjct: 852 GGKNPDGLSAAVDKIVSL 869


>gi|324993321|gb|EGC25241.1| alanine--tRNA ligase [Streptococcus sanguinis SK405]
          Length = 872

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/916 (35%), Positives = 497/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + F 
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESVFNYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLD-PLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|322517303|ref|ZP_08070179.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124086|gb|EFX95636.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 872

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/913 (35%), Positives = 492/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L++L K     L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+           
Sbjct: 417 FK-IDHEGFKAAMKEQQERARASVVKGGSMGMQN--ETLANITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  IV      +   SGQ   +VF+QTPFYAE GGQ+ 
Sbjct: 463 -------------YEAETAESHLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 509 DHGTISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              LQ  +A  K +              +   V +++  +   D+  L++  D  ++   
Sbjct: 743 LHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++      +A ++ ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIGEKVNVLVASKSK----GVHAGNVIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            N     ++ VA 
Sbjct: 858 ANGIQDLLSAVAE 870


>gi|328945496|gb|EGG39647.1| alanine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 872

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/916 (35%), Positives = 498/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAIPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVIKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLD-PLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|297198338|ref|ZP_06915735.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714390|gb|EDY58424.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 890

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/918 (36%), Positives = 508/918 (55%), Gaps = 62/918 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  RL+ITVY +D+EA ++W ++ G+  ++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLEADRLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+         +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKDNFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ + ++TG+ Y    ++ V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P+++ L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVLDLVDTVIAMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  ++       ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVAVAEENAFLKTLKAGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A + G  +G      + ++ ++ G T+F+GY     
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQGKKTGHAGAGAYRAIADQAGETEFLGYSDTES 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D G  ++I D QK   G++VH  +V+ G +         ID + R  ++
Sbjct: 511 GQIGDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQFGEVTVGAKAHAAIDNRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V       +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGIAVVTGQVPDGTTPDDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L  ++  K  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRAAVVALFTVNNGKPLTVIATNEPARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVA 893
           Q GG N     +A+  V 
Sbjct: 865 QGGGQNPAAIGEAVDAVE 882


>gi|327458679|gb|EGF05027.1| alanine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 872

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/916 (35%), Positives = 499/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ K  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G     G+++ L +    +++G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAQGIVADLKEKGQTVISGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESTFNYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    +    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVL-APIALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + +
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQD 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T++     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKTKE----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|222151505|ref|YP_002560661.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120630|dbj|BAH17965.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 874

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/911 (37%), Positives = 512/911 (56%), Gaps = 57/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF + GH + PS+ L+P +D TL++ NSG+   K  F G+  P    +T
Sbjct: 5   TAAEIRQMYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRVIPSNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
             QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT      +
Sbjct: 65  NAQKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSERWMAI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +LY+T++ ED EA+ LW    GL+ D+I RI    NFW + E GP GP +EIF+D+G
Sbjct: 121 EPEKLYVTIHPEDTEAYDLWVNEIGLTDDRITRI--EGNFWDIGE-GPSGPNTEIFYDRG 177

Query: 181 ECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           E      P        E ERY+E+WNLVF +F          LPK +IDTGMGLERMA++
Sbjct: 178 ESYGQDDPAEEMYPGGENERYLEVWNLVFSEFNHNPDHTYSPLPKQNIDTGMGLERMASI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
            Q+   NYD DLF  +I+A+EQ++G KY  N  + V  +VI DH+R+ SF I DG LP+N
Sbjct: 238 SQDVPTNYDTDLFMPIIKATEQISGRKYRDNKEDDVAFKVIADHIRTVSFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ +A+ +   +P M  L+  +   M   YP++ + K  I++ ++SE
Sbjct: 298 EGRGYVLRRLLRRAVRFAQKIDINKPFMYDLVDIVAAIMKPYYPDVDKNKDFIKKVVKSE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++RF +TL+ GLV  + +       D +L G+  FKLYDT G P+++ +++    G+  +
Sbjct: 358 EDRFHETLEEGLVQFNALKDSAKASDNVLKGEDVFKLYDTFGFPVELTEELAEEAGVE-V 416

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F  A+E QR+RAR       S   +     L     ++ F+GYD L          
Sbjct: 417 DHEGFEVAMEAQRTRAREARQKTQSMQVQNEV--LSNIRVSSTFVGYDTL---------- 464

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                         V + + A++Q G  VEEA     V+ +  +TPFYA +GGQ+ DTG 
Sbjct: 465 -------------TVDTNIIALLQDGVEVEEADDRSDVQFIMAETPFYAVSGGQVADTGT 511

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G  +++T+V K   G  +H   V  G + T+ ++   ++ + R  +  NHSATHL+
Sbjct: 512 VTGEGFEIEVTEVTKAPNGQNLHTGTVRFGKV-TKSAVNAAVNAEFRTFVIKNHSATHLM 570

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG+HV+Q GS +TP+ LRFD +H  P+T  E+  +E  VN+ I QN+ V    
Sbjct: 571 HQALKDVLGTHVNQAGSLVTPERLRFDFSHFGPVTKEEIAKVEQIVNEKIWQNIHVEINE 630

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M   +A A GA AL G KY D VRVV +       +S  LCGG HV +TGEI L  IVSE
Sbjct: 631 MPISEAKAKGAMALFGEKYGDIVRVVEM-----SDYSIELCGGVHVRNTGEIGLFKIVSE 685

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQL 772
           S   AG+RRIEA+T + A S+L    + + +L   +KV     +  +V EI    ++ + 
Sbjct: 686 SGTGAGVRRIEAVTSKAAFSYLSEYVDTVDTLLPVVKVKAKEQLTEKVNEITSMVKEQEK 745

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +   +++   +     +  +I  +  +S  +   D+K L+ +MD  + K+Q  +I L
Sbjct: 746 QIVQLNKEISALKMGDISNNIQEINGIKVLSTEVEVQDAKMLRELMDDYKSKVQDAVIFL 805

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           V  +   K + +  V + L D+  A DL +  A+   GG GGGRP  AQ G PN     +
Sbjct: 806 VAAT--DKLNYMASVPKALTDKVKAGDLIKAVAQE-TGGKGGGRPDSAQGGAPNPKDVTK 862

Query: 888 AIAGVASFLKK 898
           A+  V S++ +
Sbjct: 863 ALQFVNSYINQ 873


>gi|306833055|ref|ZP_07466186.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304424764|gb|EFM27899.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 888

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 495/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 21  TSAQVRQIWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRIT 80

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  + FD 
Sbjct: 81  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDF 136

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 137 PKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 192

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 193 EDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 252

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 253 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 312

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 313 PGNEGRGYVLRRLLRRAVMHGRRLGIKETFLYKLVPTVGKIMESYYPEILEKQDFIEKIV 372

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++   +G
Sbjct: 373 KREEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELAEDKG 432

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA+ +  GS   +    S              +   S F 
Sbjct: 433 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLS-------------SITEESVFS 478

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            ED               + S +  I+   E  E    GQ   +VF +TPFYAE GGQ+ 
Sbjct: 479 YED-------------EVLDSTMSVIIADNERTEAVSEGQ-ALLVFAKTPFYAEMGGQVA 524

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   I  ++TDVQK   G  +H   V    L    +  L ID + R ++  NH
Sbjct: 525 DHGVIKNDKGDIVARVTDVQKAPNGQALHTVEVL-ASLSVGTTYTLEIDSKRRHRVIKNH 583

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 584 TATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNAI 643

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI +
Sbjct: 644 PVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 698

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      ++E LK++A+ LKV Q   V  +V  + E+
Sbjct: 699 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQEQ 758

Query: 767 YRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +   K K            + + N + +I S+V   D+  L++  D  ++K  
Sbjct: 759 LHKLQKENAELKEKAAAAQAGDVFEDVKEANGVRYIASQVTVSDAGALRTFADNWKQKDY 818

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++    +D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 819 SDVLVLAAAIGEKVNVLVASKAKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 873

Query: 882 GNKADQAIAGVASFL 896
             K    +A VA  L
Sbjct: 874 AAKIADLLAAVAENL 888


>gi|110799076|ref|YP_696466.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168211405|ref|ZP_02637030.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|123148653|sp|Q0TPH4|SYA_CLOP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110673723|gb|ABG82710.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170710656|gb|EDT22838.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 879

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/909 (37%), Positives = 519/909 (57%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + 
Sbjct: 3   FMGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+G
Sbjct: 119 PKDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIGV-GPCGPCTEIHFDRG 177

Query: 181 ECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E           + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q
Sbjct: 178 EGKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +D
Sbjct: 358 RFNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ ++EQR RAR          +E+   +  +    T+F GY  L           
Sbjct: 417 IENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------LNSKVIVLGNNEEFKSELKEGEEGFLLTDKTPFYAEMGGQVGDRGNI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH
Sbjct: 514 TSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M
Sbjct: 574 EALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES
Sbjct: 634 SLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
            + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++   ++
Sbjct: 689 GVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEI 748

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL    ED       +I  V  ++  + +VD   L+ + D ++ K+ +GI++L  
Sbjct: 749 AELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS 808

Query: 830 ISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +++ + T++ L +  +   + +  A V+GGGGG GRP MAQ+GG N     +A
Sbjct: 809 -DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGGG-GRPDMAQAGGKNPENIAKA 866

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 867 LEKAKEVVE 875


>gi|257869401|ref|ZP_05649054.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803565|gb|EEV32387.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 880

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/915 (37%), Positives = 523/915 (57%), Gaps = 63/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGTVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPEWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W++  GL+ + I+ I   DNFW +   GPCGP SEIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWREEIGLTPEHIVEI--EDNFWDIGA-GPCGPDSEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                      E     E ERY+EIWNLVF +F  Q       LP  +IDTGMGLERM +
Sbjct: 178 PEFNDVAEDDPENYPGGENERYLEIWNLVFSEFNHQADGTYEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q    N++ DLF  +I+A ++++G    G      ++ +VI DH+R+ SF I DG LP
Sbjct: 238 IIQNAPTNFETDLFMPIIEAVQELSGNFAYGESKATDISFKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE++  +  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDSAFLYKLVPIVGKIMESYYPEVLAQQAFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V++ +  D  E L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 NEEERFHETINEGLEILNQVIAKVKADGQETLAGADIFKLYDTYGFPVELTEEVAQDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR+RAR+      S   +     L +    ++F+GY+ L       
Sbjct: 418 K-VDHAGFEKEMDAQRARARSARSTELSMGVQSAL--LTDIKVESRFVGYESLE------ 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +S +  I+Q+ ++++   +G+  +++F +TPFYAE GGQ+ D
Sbjct: 469 -----------------ANSELLVIIQEEQLLDTVTTGE-AKLIFKETPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG  +     +  +ITDV+K   G F+H A V  G L    S  L +D   R ++  NH+
Sbjct: 511 TGTVVDQSGVIVAEITDVKKAPNGQFLHTAKVT-GNLTEGASYFLQVDQHRRNKIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LGSH +Q GS + P  LRFD +H   +T+ EL  +E  VN  I + LP
Sbjct: 570 ATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTADELSQMEQIVNQKIWEALP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT   + + A   GA AL G KY   VRVV+V        S  LCGGTHV++T +I + 
Sbjct: 630 VVTIETDIDTAKGMGAMALFGEKYGQDVRVVNV-----ADWSIELCGGTHVANTEDIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T Q A + L   + +LK++A  +K +Q  +VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSQEAYALLHEGEAQLKAIAGIVKSAQIKDVVSKTEQLQQQL 744

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R LQ  +     +L  +          ++  + F++  ++  D  +L+ + D  ++K  S
Sbjct: 745 RDLQKENQALASKLANQQAGDVFKDVKEVNGIRFIAAKVTVKDMNQLRQLADQWKQKELS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L   + + K ++L  +T    ++   A DL +  A  +GGGGG GRP MAQ+GG  
Sbjct: 805 DVLVLA-TANDGKVNLLAAMTPQANEKGLKAGDLIKHIAPKVGGGGG-GRPDMAQAGGKQ 862

Query: 882 GNKADQAIAGVASFL 896
               D A+  VA++L
Sbjct: 863 PEGIDAALTEVANWL 877


>gi|322372372|ref|ZP_08046908.1| alanine--tRNA ligase [Streptococcus sp. C150]
 gi|321277414|gb|EFX54483.1| alanine--tRNA ligase [Streptococcus sp. C150]
          Length = 872

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/915 (35%), Positives = 497/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++LIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHAVEPSANLIPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  + FD 
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDNMSFKVIADHIRSLAFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGKIMESYYPEVLEKKDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L++L K   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDIFKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+  D        
Sbjct: 417 FK-IDHEGFKAAMKEQQDRARASVVKGGSMGMQN--ETLANITEPSEFLYED-------- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  IV      +   SGQ   +VF+QTPFYAE GGQ+ 
Sbjct: 466 ----------------EAAESRLSVIVADDARHDTVNSGQ-ALLVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 509 DHGTISDAAGTVVARVVDVQRAPNGQPLHTVEVE-GELVVGANYKLEIDHTRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G+H  Q GS    + LRFD TH + +TS EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIIGNHAVQAGSLNEQEFLRFDFTHFEAVTSEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              LQ  +A  K +              +   V +++  +   D+  L++  D  ++   
Sbjct: 743 LHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D     +A ++ ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIGEKVNVLVASKSKD----VHAGNVIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            N     ++ VA  L
Sbjct: 858 ANGIQDLLSAVAEQL 872


>gi|327473314|gb|EGF18734.1| alanine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 872

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/916 (35%), Positives = 498/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ K  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESVFNYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLD-PLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|320528969|ref|ZP_08030061.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138599|gb|EFW30489.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 872

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/912 (36%), Positives = 513/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L FF +K  H  L S SLIP +DPTL+   +GM P K  FTG+ KP    
Sbjct: 1   MTGNELREAYLRFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPCPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 61  ITTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y +D EA  +W +  GL  D I+ +  NDNFW +   GPCGP SEI+ D G
Sbjct: 117 PKEKLWVSIYPDDNEARAIWLEQPGLLPDHIVPL--NDNFWEIG-PGPCGPDSEIYIDLG 173

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  G   + +R++EIWNLVF Q+++  + E  +L   +IDTG GLER+A+V+Q
Sbjct: 174 EGRGCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I  + +++G+ Y  +    ++ +VI DH RS S +I DGILP+NEG
Sbjct: 234 NKETNFETDLLYPIIAYASKISGVAYGSDKSKDISLKVIADHARSISVMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+      A  + EL   +  I+  +R E
Sbjct: 294 RGYVLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+G +  L ++   +L GD+ FKLYDT+G P ++ ++IL   G+  
Sbjct: 354 EERFASTLAQGMELLNGEIDRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D + F++ +E QRSRAR+                                        D
Sbjct: 413 LDGVEFDKEMEAQRSRARSARA-----------------------------ENQVVAVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +        +    ++V AI + GEIV+    G+   ++ D+TPFYAE GGQ+GD G
Sbjct: 444 LSNIDTSALRSDSTAKEAVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + I++ +K  +G   H A VE G +     + +T++ + +   + NH+ATHL
Sbjct: 504 VLRSDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G+HV Q GS +TPD LRFD T+ +P+T  +++ IE+ VN  I +++ +   
Sbjct: 564 LQAALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDIS 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M   DA   GA AL G KY D VRVVSV        S  LCGG+HV +TG+I L  I+ 
Sbjct: 624 MMPIADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIG 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  + AG+RRIEAITG+ A S+       ++ +++ LK    ++  ++++  +E + +Q 
Sbjct: 679 EFGVAAGVRRIEAITGKAAFSYAATLYHTVQEISAKLKTRPEDLSYQIDKFLDERKAMQE 738

Query: 773 -----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                   + K       ++  +I   + ++   +     EL+++ D   +K+  GI++L
Sbjct: 739 QLRQFAEFRDKADAQKLLMAVREIGAFHVVAGKANVDSMDELRTIADLACEKLDHGIVIL 798

Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S+++   ++ +    +A  + + +AK +GGGGG GRP MAQ+GG       
Sbjct: 799 AAVI-DDKVSLVVKADKNAVSAGAHAGQIIKEAAKEVGGGGG-GRPDMAQAGGKTPENIP 856

Query: 887 QAIAGVASFLKK 898
           QA     S +++
Sbjct: 857 QAFDAAISVIQR 868


>gi|168207852|ref|ZP_02633857.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170660832|gb|EDT13515.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
          Length = 879

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/909 (37%), Positives = 519/909 (57%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + 
Sbjct: 3   FMGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+G
Sbjct: 119 PKDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIGV-GPCGPCTEIHFDRG 177

Query: 181 ECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E           + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q
Sbjct: 178 EGKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +D
Sbjct: 358 RFNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ ++EQR RAR          +E+   +  +    T+F GY  L           
Sbjct: 417 IENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH
Sbjct: 514 TSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M
Sbjct: 574 EALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES
Sbjct: 634 SLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
            + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++   ++
Sbjct: 689 GVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEI 748

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL    ED       +I  V  ++  + +VD   L+ + D ++ K+ +GI++L  
Sbjct: 749 AELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS 808

Query: 830 ISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +++ + T++ L +  +   + +  A V+GGGGG GRP MAQ+GG N     +A
Sbjct: 809 -GNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGGG-GRPDMAQAGGKNPENIAKA 866

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 867 LEKAKEVVE 875


>gi|224538063|ref|ZP_03678602.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520311|gb|EEF89416.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 872

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/918 (36%), Positives = 504/918 (54%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRPEEEKAQIPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ+KT+NYD D+F+ +++A   +TG KY  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQDKTSNYDTDVFQPILKAIGNMTGKKYGEDEKSDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPAHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  EDA   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGS------SVEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    +   ++ LK L +    +  ++ G + +
Sbjct: 674 GNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAP-DLAGTIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKELKSVMDALQK 818
             EE    K Q+    R+ +  +++     + +++ +    I + + ++ +K++   L+ 
Sbjct: 733 YIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVIKICAPIPAESIKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + AI  V   
Sbjct: 852 GGKNIDGLNAAIEKVLEL 869


>gi|57506111|ref|ZP_00372033.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015595|gb|EAL52387.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 844

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/896 (39%), Positives = 527/896 (58%), Gaps = 58/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-YQAVTTV 64
            IR  FL FF   GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+         T+ 
Sbjct: 2   DIRAQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKER 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV+++D+EA+ LW+  + +  ++I R    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + + K +N
Sbjct: 179 HSSEDYMGGDGDRFLEIWNLVFMQYERSSNGTLSPLPKPSIDTGMGLERVYAIKEGKLSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  LI     + G  Y   +  ++RVI DH+RSS+FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  LC  MG  Y  L + K  I+E ++ E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEAIKEQIKLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ L +  L+      I +G++AFKLYDT+G PLD+ QD+L  +GL+ ID   F + + 
Sbjct: 359 KGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFERLMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RA+A   G G       +  L E++G  +F+GY                       
Sbjct: 416 EQKERAKAAWKGSGDKVVSGDFKILLERFGKNEFVGY----------------------- 452

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  ++ E+  +GQ   V  D+TPFYA +GGQ+GD G         +
Sbjct: 453 TQKACESQILALLDENFKMQEKLHNGQTGWVFLDKTPFYANSGGQVGDKGFL----GENE 508

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I+D QK  E       I  +  L+ +  L+  ID   R Q++ +HSATHLLH+AL  ILG
Sbjct: 509 ISDTQKFFE--LNLSKITAKNELKLDEKLLAHIDEDKREQIARHHSATHLLHYALRKILG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +  + LRFD  H K +T  EL+ IE+ VN++I+ + P +   M+ +DA  S
Sbjct: 567 THIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAKKS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY  +VRV+S+        S  LCGGTHV+++ EI   +I+ ES + AG+RR
Sbjct: 627 GAIALFSEKYESKVRVLSLG------ESKELCGGTHVNNSAEIGSFFILKESGVSAGVRR 680

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A ++     ++L+SL   LK +  +++  + ++  E  KL       K +L 
Sbjct: 681 IEAVVSKAAHTYAKNALKELESLKIELKNN--DLLSGISKLKNEISKL-------KNELK 731

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             + +  K  +V  +   I++V++ ++K+++D  + + +  +I+L+   KE K S+   V
Sbjct: 732 NSNQNELKSENVKGVQICIAKVENGDIKAMIDHFKNQFEKAVILLI-QEKEGKISLAAGV 790

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A +L +  A +L GG GGG+   A +GG +  K D+A+    SF++K
Sbjct: 791 KNAP---LKAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842


>gi|209559623|ref|YP_002286095.1| alanyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|209540824|gb|ACI61400.1| Alanyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 872

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/913 (35%), Positives = 491/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|300784619|ref|YP_003764910.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299794133|gb|ADJ44508.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 886

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 510/919 (55%), Gaps = 61/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   I   FL  F+  GH  +PS+ LI  +DP L+F N+GMV FK  F G+  P Y   
Sbjct: 1   MDTHEITDRFLRHFEGRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIEAAWELITKPQTEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY++D EA  LW+K++GL  ++I      DN+W M   GP GPCSEI+
Sbjct: 116 GFGLDPERIWATVYNDDSEAAGLWRKLTGLPGERIQARDGKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------KQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ  + +       +    LPK +IDTGMG+
Sbjct: 176 YDRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDLSPKLGHKPIGELPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+AT+LQ   N Y+ DL + +I  +E+ +G +Y  N  + V  RVI DH R+   LI D
Sbjct: 235 ERVATILQGVENVYETDLVRPVIGRAEEFSGRRYGSNHADDVRFRVIADHARTGVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +   RLLG  EP++      +   MG  YPEL+     I 
Sbjct: 295 GVTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVRDTMGPTYPELVSGFDRIN 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E +R E+E F  TL  G  + D           ++L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 EVVRIEEEAFLSTLTSGSRIFDMAAEETKRGGGDVLAGDKAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F   + EQR+RA+A +    +G  +   +  + E++G T+F+GY  L+ 
Sbjct: 415 EQGLT-VDEEGFRTLMNEQRTRAKADAAARKTGHGDLSEYRKVLEQHGETEFLGYTDLQ- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V A+++ G+ V    +G+K E+V D+TPFYAE+G
Sbjct: 473 ----------------------AEAKVVALLEDGQPVRSVSAGKKAELVLDRTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG  +GDG+ L++ DVQK   G++VH   V  G +  +  +  ++D   R  +  
Sbjct: 511 GQVADTGVLLGDGVELKVLDVQKIVPGLYVHRVEVVDGEIGLDSKVTGSVDAHRRLSIER 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+    G   +Q GS  +P  +RFD T    +++  L  +E  VND +  
Sbjct: 571 SHSATHLVHAAVRGAYGKRAAQAGSLNSPGRMRFDFTTPGSVSADVLTEVEQEVNDYLQT 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V +    ++ A+  GA AL G KY + VRVV     D G +S  LCGGTHV   G++
Sbjct: 631 NVEVQSFTTTKDKALELGAVALFGEKYGNDVRVV-----DMGDYSRELCGGTHVDRIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VS++SI +G+ R+EA+ G  A  ++  +   +  LA+  KV    + GR++++  
Sbjct: 686 GLVKLVSDASIGSGVHRVEALVGTDALKYVRKEQLLVSQLANTFKVPSDQLPGRIDDVLT 745

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +  +   A+ K Q  +           +I  V  ++ ++ +VD   L+++   ++ ++
Sbjct: 746 RLKNAEKEIAQLKTQQVLGSAGALVDKAQEIGGVTVVAEVVPDVDGNGLRALASDIRGRL 805

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +  G++ L   + E K S ++  T+   ++   A  L    A+ + GG GGG+P MAQ 
Sbjct: 806 GTRPGVVALFSPAGE-KLSFVVATTKAAQEKGIAAGKLVPSFAEKI-GGRGGGKPDMAQG 863

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N   A +A+  + S +
Sbjct: 864 GGTNPAGAAEAVTALRSAI 882


>gi|207744018|ref|YP_002260410.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206595420|emb|CAQ62347.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
          Length = 825

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/799 (42%), Positives = 471/799 (58%), Gaps = 52/799 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF+  GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K  Y   
Sbjct: 14  MKASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRA 73

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK  A+  AW+LLT+E+ L 
Sbjct: 74  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLP 133

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174
             +L+ TVY  D+EA+ +W K+ GL  ++++RI  N       DNFW MAETGPCGPCSE
Sbjct: 134 ADKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 193

Query: 175 IFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQ-----ERFILPKMSIDTGM 228
           IF+D G  I GG PGS E +G+RYIEIWN VFMQF++Q            LP   +DTGM
Sbjct: 194 IFYDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 253

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           G+ER+A +LQ   +NY+IDLF+ LI A+ + T  K   NN  + RVI DH+R+ SFLI D
Sbjct: 254 GMERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANN--SLRVIADHIRACSFLIVD 311

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G++P NEGRGYVLRRI+RRA+ +   LG        L+  L T+MG AYPEL +A+  + 
Sbjct: 312 GVIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVV 371

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + LR+E+ RF +T++ G+ +LDG L  L     ++L+G++AFKL+DT G PLD+ QD+  
Sbjct: 372 DVLRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDVCR 431

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D  +F+ A+  QR +ARA      +  T      L      T F GYD L   
Sbjct: 432 ENDVI-VDEAAFDAAMNRQREQARAAGKFKLAAGT------LDYTGDKTTFHGYDQLV-- 482

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 ++ V A+   G  V+    GQ   VV D TPFYAE+GG
Sbjct: 483 --------------------RETARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGG 522

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G      +   + D  K    +F HH  +  G+L+   ++   +D   R +   N
Sbjct: 523 QVGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRN 582

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T  +++ +E  VN  I  N
Sbjct: 583 HSATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                +IM  +DA+ +GA AL G KY D VRV+S+        S  LCGGTHV+ TG+I 
Sbjct: 643 AATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIG------TSKELCGGTHVARTGDIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L  IV ES + AGIRR+EAITG     +L   D ++   A+ L+     +  R+ ++ ++
Sbjct: 697 LFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQ 756

Query: 767 YRKLQLIHAKRKLQLNVED 785
            + L+    + K +L    
Sbjct: 757 VKTLEKELERLKSKLAASQ 775


>gi|18310762|ref|NP_562696.1| alanyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|168218241|ref|ZP_02643866.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|20532247|sp|Q8XJH6|SYA_CLOPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18145443|dbj|BAB81486.1| alanine-tRNA ligase [Clostridium perfringens str. 13]
 gi|182379737|gb|EDT77216.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 879

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/909 (37%), Positives = 519/909 (57%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + 
Sbjct: 3   FMGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+G
Sbjct: 119 PKDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIGV-GPCGPCTEIHFDRG 177

Query: 181 ECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E           + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q
Sbjct: 178 EGKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +D
Sbjct: 358 RFNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ ++EQR RAR          +E+   +  +    T+F GY  L           
Sbjct: 417 IENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH
Sbjct: 514 TSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M
Sbjct: 574 EALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES
Sbjct: 634 SLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
            + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++   ++
Sbjct: 689 GVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEI 748

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL    ED       +I  V  ++  + +VD   L+ + D ++ K+ +GI++L  
Sbjct: 749 AELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS 808

Query: 830 ISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +++ + T++ L +  +   + +  A V+GGGGG GRP MAQ+GG N     +A
Sbjct: 809 -DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGGG-GRPDMAQAGGKNPENIAKA 866

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 867 LEKAKEVVE 875


>gi|182625718|ref|ZP_02953487.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|177909120|gb|EDT71595.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
          Length = 879

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/909 (37%), Positives = 519/909 (57%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + 
Sbjct: 3   FMGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+G
Sbjct: 119 PKDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIGV-GPCGPCTEIHFDRG 177

Query: 181 ECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E           + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q
Sbjct: 178 EGKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKVIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +D
Sbjct: 358 RFNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ ++EQR RAR          +E+   +  +    T+F GY  L           
Sbjct: 417 IENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH
Sbjct: 514 TSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M
Sbjct: 574 EALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES
Sbjct: 634 SLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
            + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++   ++
Sbjct: 689 GVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEI 748

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL    ED       +I  V  ++  + +VD   L+ + D ++ K+ +GI++L  
Sbjct: 749 AELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS 808

Query: 830 ISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +++ + T++ L +  +   + +  A V+GGGGG GRP MAQ+GG N     +A
Sbjct: 809 -DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGGG-GRPDMAQAGGKNPENIAKA 866

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 867 LEKAKEVVE 875


>gi|317475197|ref|ZP_07934464.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA]
 gi|316908650|gb|EFV30337.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA]
          Length = 873

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 496/919 (53%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADSSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y       +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKE-NNLPIH--ITKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732

Query: 763 IWEEY----RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE     ++++    +++ QL  + L    +I  V  +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAIKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 852 AGGKNPDGLSAAVDKVIEL 870


>gi|325688315|gb|EGD30334.1| alanine--tRNA ligase [Streptococcus sanguinis SK72]
          Length = 872

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/916 (35%), Positives = 496/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         + + + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELIAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDKAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    ++D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKSKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|25028304|ref|NP_738358.1| alanyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23493588|dbj|BAC18558.1| putative alanyl-tRNA synthetase [Corynebacterium efficiens YS-314]
          Length = 926

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/921 (35%), Positives = 494/921 (53%), Gaps = 62/921 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--QAV 61
              IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 39  THEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTA 97

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 98  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEG 153

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 154 GYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 213

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G + +  RY+EIWNLVFM+FE+     +        LPK +IDTGMG+
Sbjct: 214 YDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGV 272

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI D
Sbjct: 273 ERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILD 332

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  I 
Sbjct: 333 GVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERIL 392

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++  
Sbjct: 393 RVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAA 452

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L   
Sbjct: 453 EAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELES- 510

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GG
Sbjct: 511 ----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGG 548

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           QLGD G  +     + I DVQK  + ++VH A+V  G L     +V  +D Q R      
Sbjct: 549 QLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQA 608

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ +  +
Sbjct: 609 HTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTD 668

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 669 WAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIG 724

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ ++
Sbjct: 725 PVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDK 784

Query: 767 YRKLQLIHA---KRKLQLNVEDLS--CHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +   A   +R+L    E+      +I  +  +   +   +D+ +L+++   L+ K+
Sbjct: 785 LKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKL 844

Query: 821 --QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
               G++++   S++  K   +   T+  + R  ++ +L +L    +  G GGG+P MAQ
Sbjct: 845 SNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQ 903

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G + +  D A   V + L+
Sbjct: 904 GSGSDIDGLDAAFNAVRAELE 924


>gi|332179704|gb|AEE15393.1| alanyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 854

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/900 (36%), Positives = 518/900 (57%), Gaps = 52/900 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL +F++ GH +LPS SL+P  DPT++FT +GMVPFK  F G+E+P ++  
Sbjct: 1   MTSDDIRRLFLNYFKERGHTVLPSFSLVP-EDPTILFTIAGMVPFKPYFLGREEPPFKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     ND++ VG+T RHHTFFEMLGNFSFG YFKE+AI  AW  +T+   L 
Sbjct: 60  TTSQKCLRT----NDIEEVGKTARHHTFFEMLGNFSFGDYFKEKAIPFAWVFVTEVLHLQ 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+IT+Y +D+E++++W+ +  + A+KI R    DNFWS    GPCGPCSEI++D+GE
Sbjct: 116 KERLFITIYKDDDESYEIWRSLD-IPAEKIYRSGEKDNFWSAGPVGPCGPCSEIYYDRGE 174

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                 P  S   + +R++EIWNLVFMQ+ +  +    +L K  IDTGMGLER+A+VLQ 
Sbjct: 175 NFGCKRPDCSPLCDCDRFLEIWNLVFMQYNRDEESNLTLLSKKGIDTGMGLERIASVLQG 234

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +NY+ DL   +I+    +TG++Y+G  I+  RV+ DHLR + F I+DG+LP+NEGRGY
Sbjct: 235 KDSNYETDLIYPIIEKLSSITGIEYKGKGIIPLRVMSDHLRGAVFAISDGVLPSNEGRGY 294

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           V+RR++RRA+ ++ L GY  P +   +P +      +YPEL + K  I + +RSE+E+F 
Sbjct: 295 VVRRLLRRALTFSHLSGYQTPFIYKAVPTVSNIYRHSYPELFEKKDYIIDAIRSEEEKFS 354

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           ++L  GL + + ++  + KD I++G++AF LYDT+G P+++ +++     + G+DI  FN
Sbjct: 355 QSLKDGLSMFNKLMPQIKKDGIISGEIAFLLYDTYGFPVELTKEMAAEFNI-GVDIEGFN 413

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + L ++++ +R  S  +    T             ++F+GYD L+ +             
Sbjct: 414 ELLMQRKNLSRQGSQFVDEIITTSF---------TSEFVGYDNLKTN------------- 451

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S +  I +    V   ++G++  ++ ++TPFY E+GGQ+ D G  + +  
Sbjct: 452 ----------SKILGIYKNNNEVRSLLAGEEGYIILNKTPFYPESGGQVSDIGYIVSENS 501

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++T VQ++ + IF H   VE G       +   ID + RR  S NH+ TH+LH  L  
Sbjct: 502 TFRVTSVQREKDAIF-HFGKVESGSFCAGDYVEAEIDIKRRRLSSSNHTCTHILHAVLRE 560

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
             G  V Q GS ++ + LRFD   S  ++  ++  IE +VN II +N  V+ + M+ EDA
Sbjct: 561 KFGETVKQKGSFVSDELLRFDF-FSNALSDEDIADIERSVNKIIMENFKVIVQEMDLEDA 619

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I SGA AL   KY  RVRVVS++       SS LCGGTHV  TGEI    IV + SI + 
Sbjct: 620 IKSGAIALFSDKYKSRVRVVSIDS-----VSSELCGGTHVKMTGEIGTFVIVKQESIASS 674

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKR 777
           +RRIEA TG +A  +   + + L  +   L  S   +   +  +   +E +K        
Sbjct: 675 VRRIEAFTGLKALKYFQQKRKDLDEIDKILDASGSPLKKSLSILKDFDETKKRLREVTMN 734

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            L++   +L+  +I   +  S  +    S+++   +D  + +  + +I+ +     + AS
Sbjct: 735 YLRMKANNLTVEEIGKFSLYSENLDGFASEDMLFFVDLARNRFDN-LILFIYSVNNQSAS 793

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            ++ +++ L    +A +LA++    + GGG GGR  ++Q G  N NK + AI  +  FLK
Sbjct: 794 FVLSISDKLSQSLSAKELAKVITS-VTGGGAGGRDKVSQGGIKNINKLNSAIIALKDFLK 852


>gi|194337650|ref|YP_002019444.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310127|gb|ACF44827.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 888

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/925 (35%), Positives = 505/925 (54%), Gaps = 69/925 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR +FL++F +  H ++ S+ +IP +DPTL+FTN+GM  FK++F G+    Y  
Sbjct: 1   MKS-WEIRQSFLDYFAQKAHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L
Sbjct: 60  AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKQEAITWAWELLTDVWKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY +D+E+F++WK  + ++ D IIR    DNFW M ETGPCGPCSEI  D  
Sbjct: 120 PKERLYATVYQDDDESFQIWKTATDINPDHIIRFGEKDNFWEMGETGPCGPCSEIHIDLT 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E    G    +    R IE+WNLVF+Q+ +Q+      LP   +DTGMG ER+A VLQ K
Sbjct: 180 ED-GSGHSLVNVGDYRVIELWNLVFIQYNRQSDGSLEPLPMKHVDTGMGFERVAAVLQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            +NYD D+F+ L     ++TG++Y    +    +  RVI DH R+ +F ++DG +P+NEG
Sbjct: 239 GSNYDSDVFQPLFDRITEITGVRYGASMDDPLDIAMRVIADHARTLTFALSDGAMPSNEG 298

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ Y++ LGY EP++  L+  L   MG  +PEL + +  + + +R+E+E
Sbjct: 299 RGYVLRRILRRALRYSKNLGYNEPILHQLVGTLAASMGDVFPELRKQQETVSKIIRAEEE 358

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TLDRG+ + + V+  +       + G+ AFKLYDT+G P D+ + +    G + +D
Sbjct: 359 SFIVTLDRGIEIFNEVIEQVRSANSTTITGEDAFKLYDTYGFPFDLTRLMASDVGFS-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   +++Q++RAR           +   +        ++F GYD L     +   + 
Sbjct: 418 GEGFEHCMQQQKTRARTDRKEKHQVQDDGSQWLWFSDVHRSEFAGYDQLEMPVLITGIKH 477

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           +                                  K+ +V D+TPFYAE+GGQ+GD G  
Sbjct: 478 LQG--------------------------------KLLLVLDRTPFYAESGGQVGDRGWI 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL------------VLTIDYQNRRQ 582
                RLQ++D  K  + I          IL T +S+              ++D   R+ 
Sbjct: 506 ESATYRLQVSDTIKDGDAIVHLVTEAFDKILDTPISVDDLQLDEKELSAEASVDRHLRQD 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHL+H AL  ILG HV Q GS +  + LRFD +H   +T AE++++E +VND 
Sbjct: 566 TECNHTATHLMHSALRRILGQHVQQKGSYVNAERLRFDFSHFSRMTEAEIEAVEADVNDH 625

Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +  PV     +  +DAIA GA A  G KY DRVRV+ +        S  LCGGTH  +
Sbjct: 626 IRRAEPVQKHADVLYDDAIAMGALAFFGDKYADRVRVIEIPG-----ISVELCGGTHADN 680

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRV 760
            G I L  IVSESS+ +G+RRIEA+TG+ A   L  +  +L+ +   LK      V+ ++
Sbjct: 681 IGRIGLFKIVSESSVASGVRRIEALTGKAAEKLLWKEYHELQQVRHLLKAKGDEPVLEKI 740

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDA 815
             + +  ++L+   +  ++   V  L+        I+    M+ ++ EVD   L+    A
Sbjct: 741 VALMDAKKELEKELSGSRVGSLVTSLTAELDASPDISGCRVMTKVLEEVDGDTLRQAALA 800

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPH 873
           L+ +  S   +L  + ++ K +++   ++  +     +A  L R +A+ + GG GGG+P 
Sbjct: 801 LRDQATSVAGLLCSV-EDGKIALVSFASDKAVREFGIDAGKLIREAAQCVHGG-GGGKPE 858

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
            A +GG N     +A     + +++
Sbjct: 859 FATAGGKNPEGIQKAFDTFLAAIRE 883


>gi|50914453|ref|YP_060425.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|59798488|sp|Q5XBH1|SYA_STRP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50903527|gb|AAT87242.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 872

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/913 (35%), Positives = 493/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++++++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELIEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|71903788|ref|YP_280591.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|83305861|sp|Q48SS4|SYA_STRPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71802883|gb|AAX72236.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 872

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/913 (35%), Positives = 490/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|171779579|ref|ZP_02920535.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281681|gb|EDT47115.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 872

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI   ++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++ +  W  + G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R E+E F +T+D G  +LD +L+ L     + + G   FKLYDT+G P+++ +++   +G
Sbjct: 357 RREEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDIFKLYDTYGFPVELTEELAEDKG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    S                      
Sbjct: 417 FK-IDHAGFEAAMKEQQERARASVVKGGSMGMQNETLS---------------------- 453

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                +  +         + S +  I+   E  E    GQ   +VF +TPFYAE GGQ+ 
Sbjct: 454 ----SITEESVFSYEEEVLESTLSVIIADKERTEAVSEGQ-ALLVFAKTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   I  ++ DVQK   G  +H   V    L    +  L ID + R  +  NH
Sbjct: 509 DHGVIKNDKGDIVARVIDVQKAPNGQALHTVEVL-ASLSVGTTYTLEIDAKRRHSVIKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 568 TATHLLHAALHHVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIWNAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV+T   + + A + GA AL G KY   VRVV++     G +S  LCGGTHVS+T EI +
Sbjct: 628 PVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG+ A      ++E LK++A  LKV Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
             KLQ  +A+ K +            + + N +  I S+V   D+  L++  D  ++K  
Sbjct: 743 LHKLQKENAELKEKAAAAQAGNVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++D     +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAAIGEKVNVLVASKSKD----VHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
             K    +A VA  L
Sbjct: 858 AAKIADLLAAVAENL 872


>gi|327468935|gb|EGF14407.1| alanine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 872

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/916 (35%), Positives = 499/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ++RARA  +  GS   +                          
Sbjct: 416 GMT-VDRSGFEAAMKEQQNRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G       +L  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGKLVAQVTDVQKAPNGQPLHTVEV-FAPLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY  +VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKKVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKDVQETNGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|125717605|ref|YP_001034738.1| alanyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|205830231|sp|A3CLY3|SYA_STRSV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125497522|gb|ABN44188.1| Alanyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 872

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/916 (35%), Positives = 496/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      +++G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVISGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 DMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELTAELLAIVADDAAVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKDVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|110802307|ref|YP_699065.1| alanyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|122956614|sp|Q0SS42|SYA_CLOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110682808|gb|ABG86178.1| alanine--tRNA ligase [Clostridium perfringens SM101]
          Length = 879

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/909 (37%), Positives = 519/909 (57%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + 
Sbjct: 3   FMGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+G
Sbjct: 119 PKDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIGV-GPCGPCTEIHFDRG 177

Query: 181 ECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E           + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q
Sbjct: 178 EGKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +D
Sbjct: 358 RFNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ ++EQR RAR          +E+   +  +    T+F GY  L           
Sbjct: 417 IENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH
Sbjct: 514 TSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M
Sbjct: 574 EALKEILGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES
Sbjct: 634 SLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
            + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++   ++
Sbjct: 689 GVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEI 748

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL    ED       +I  V  ++  + +VD   L+ + D ++ K+ +GI++L  
Sbjct: 749 AELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS 808

Query: 830 ISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +++ + T++ L +  +   + +  A V+GGGGG GRP MAQ+GG N     +A
Sbjct: 809 -DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGGG-GRPDMAQAGGKNPENIAKA 866

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 867 LEKAKEVVE 875


>gi|312864171|ref|ZP_07724405.1| alanine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100172|gb|EFQ58381.1| alanine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 872

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/913 (35%), Positives = 491/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS +F I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG ++  +  L+P +   M S YPE+++ K  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G  +LD +L++L K     L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELAEDEG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F+           
Sbjct: 417 FK-IDHEGFKAAMKEQQERARASVVKGGSMGMQN--ETLANITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               S +  IV      +   SGQ   +VF+QTPFYAE GGQ+ 
Sbjct: 463 -------------YEAETAESHLSVIVADDARHDSVNSGQ-ALLVFEQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G        +  ++ DVQ+   G  +H   VE G L    +  L ID+  R ++  NH
Sbjct: 509 DHGTISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H  Q GS    + LRFD TH + +T  EL++IE+ VN+ I +  
Sbjct: 568 TATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A + GA AL G KY   VRVVS+     G +S  LCGGTHV++T EI +
Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGM 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T + A      +++ LK++A+ LK  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQ 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
              LQ  +A  K +              +   V +++  +   D+  L++  D  ++   
Sbjct: 743 LHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     EK   ++   ++      +A ++ ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAAHIGEKVNVLVASKSK----GVHAGNVIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            N     +  VA 
Sbjct: 858 ANGIQDLLLAVAE 870


>gi|225873568|ref|YP_002755027.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793929|gb|ACO34019.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 982

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1010 (36%), Positives = 535/1010 (52%), Gaps = 151/1010 (14%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR TFL FF+  GH  + SSSL+P NDPTL+FTN+GM  FK++F G E   Y   T
Sbjct: 5   SGSDIRETFLRFFETKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGLEHRDYARAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+L+T      +
Sbjct: 65  TSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKADAIAYAWELVTSLDWLGI 124

Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            + +LY+T++        DEEA++LW+   G+ A++I      DNFW M +TGPCGPCSE
Sbjct: 125 PKEKLYVTIFKGENGVPRDEEAYELWRG-QGVPAERIFEFGAKDNFWQMGDTGPCGPCSE 183

Query: 175 IFFDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           IF+D G      PG      ++  RY+EIWNLVFMQF++    E  +LPK SIDTG GLE
Sbjct: 184 IFYDMGMDAAETPGVDKPFGQDDARYVEIWNLVFMQFDRSANGELALLPKPSIDTGAGLE 243

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------------------------- 263
           R+A+VLQ K +N++ DLF  LIQ + ++TG++                            
Sbjct: 244 RLASVLQGKVSNFETDLFTPLIQKAAELTGVRVSQSASQQVSEPAKGSQGEGDVSGNDLS 303

Query: 264 -------------YEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                         EG  +    + R+I DH R+++FLI+DG+LPANEGRGYVLR+I+RR
Sbjct: 304 RAAHGAKQEGVLAPEGKELTGNASLRIIADHARAATFLISDGVLPANEGRGYVLRKILRR 363

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
            + + RLLG  +P M  ++ A+  EM  AYPEL ++   + + + +E+ +F + L+ G  
Sbjct: 364 GIRHGRLLGQEQPFMGQMVYAVRDEMQVAYPELKESAERVAKVVEAEERQFARVLEVGSA 423

Query: 368 LLDGVLSH---------------------------------------------LGKDEIL 382
            LD ++                                                 +  +L
Sbjct: 424 QLDQLIRSEAAGNGSDSGDRWGSGAGTGDGAGFGDGSGFGGGSGSGAGFGDGSGSERRVL 483

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G  AF LY+T+GLPLD M D     G+   D+  F +A  E+++RARA   G    +  
Sbjct: 484 HGREAFHLYETYGLPLDFMMDAARDAGI-DFDLTGFEEARAEEQARARASWKGGAKQSAS 542

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
            ++  L      T F GY  LR                         + V AIV+ G+ V
Sbjct: 543 PVYREL----PKTIFEGYGKLRVEG----------------------AEVLAIVKDGQGV 576

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAI 559
           + A  G  VEVV + T FYA++GGQ+GD G    D    +  +++   K  +G+F H A+
Sbjct: 577 KAANPGDAVEVVLNATSFYADSGGQMGDHGWLYSDDHNSVVAEVSGCTKPVQGVFAHKAV 636

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           + R  L     +   +D   R     NH+ THLLH AL  +LG+HV Q GS + P  LRF
Sbjct: 637 L-RQTLALGDKVDTVVDADFRAATRRNHTGTHLLHAALREVLGTHVKQAGSLVEPGRLRF 695

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNREDAI-ASGAAALLGTKYNDRVR 677
           D +H   I   ELK IED +N  +  N  V T   +  + A+    A AL G KY +RVR
Sbjct: 696 DFSHFTQIADEELKDIEDLINRQVLVNTRVETIEDVPIDVAVNEYHAMALFGEKYGERVR 755

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +     G  S+ LCGGTH  +TGEI ++ ++SE S+ +G+RR+EA+TG  A      
Sbjct: 756 VVKI-----GDFSTELCGGTHTGATGEIGVVKLMSEGSVSSGVRRVEAVTGLGALDEFRR 810

Query: 738 QDEKLKSLASFLK-----VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----S 787
             + +  LA+ L           +  R+    EE +KL+    + +++     +      
Sbjct: 811 GYQ-VAQLAAQLAPSAEMSPAEALQHRLAAQDEELKKLKRELDQVRMKSAASAVSGAANQ 869

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             ++  V  ++  + ++D  ++++++D L+ ++ SG+++L    +E K ++++ VT+DL 
Sbjct: 870 AAEVNGVKVLAQRVDQLDRGQMRTLVDNLRNQLGSGVVVLGSAQEEGKVALIVGVTKDLT 929

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  A  +    AK + GG GGGRP MA++GG + ++ D A+AGV   +K
Sbjct: 930 GKVQAGKVVAQVAKQV-GGSGGGRPDMAEAGGKDASQLDAALAGVPEVVK 978


>gi|324990574|gb|EGC22510.1| alanine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 872

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/916 (35%), Positives = 496/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + A+V     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELTAELLAVVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +              +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKDVQETNGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|325694024|gb|EGD35942.1| alanine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 872

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/916 (35%), Positives = 496/916 (54%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   +G    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESVFNYEKEELTAELLAIVADDASVESVETG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+ DVQK   G  +H   V    L    S  L IDY  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVKDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDYSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPDLLAAVAEKL 872


>gi|315638099|ref|ZP_07893284.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315481947|gb|EFU72566.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 844

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/896 (39%), Positives = 529/896 (59%), Gaps = 58/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-YQAVTTV 64
            IRT FL FF   GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+         T+ 
Sbjct: 2   DIRTQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+  I  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKER 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV+++D+EA+ LW+  + +  ++I R    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + + K +N
Sbjct: 179 HSSEDYMGGDGDRFLEIWNLVFMQYERSSDGTLSPLPKPSIDTGMGLERVYAIKEGKLSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  LI     + G  Y   +  ++RVI DH+RSS+FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  LC  MG  Y  L + K +I+E ++ E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEVIKEQIKLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +G+ L +  L+      I +G++AFKLYDT+G PLD+ QD+L  +GL+ ID   F + + 
Sbjct: 359 KGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFERLMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ RA+A   G G       +  L E++G  +F+GY                       
Sbjct: 416 EQKERAKAAWKGSGDKAVSGDFKILLERFGKNEFVGY----------------------- 452

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  ++ E+   GQ   V  D+TPFYA +GGQ+GD G         +
Sbjct: 453 TQKACESQILALLDENFKMQEKLHKGQTGWVFLDKTPFYANSGGQVGDKGFL----GENE 508

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I+D QK  E       I  +  L+ +  L+  ID   R Q++ +HSATHLLH+AL  ILG
Sbjct: 509 ISDTQKFFE--LNLSKITAKNELKLDEKLLAHIDEGKREQIARHHSATHLLHYALRKILG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H++Q GS +  + LRFD  H K +T  EL+ IE+ VN++I+ + P +   M+ +DA  S
Sbjct: 567 AHIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAKKS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY ++VRV+S+        S  LCGGTHV+++ EI   +I+ ES + AG+RR
Sbjct: 627 GAIALFSEKYENKVRVLSLG------ESKELCGGTHVNNSAEIGSFFILKESGVSAGVRR 680

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A ++     ++L+SL   LK +  +++  + ++  E  KL       K +L 
Sbjct: 681 IEAVVSKAAHAYAKNALKELESLKIELKNN--DLLSGISKLKNEISKL-------KNELK 731

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             + +  K  ++  +   I+++++ ++K+++D  + + +  +I+L+   KE K S+   V
Sbjct: 732 NSNQNELKSENIKGVQICIAKIENGDIKAMIDHFKNQFEKAVILLI-QEKEGKISLAAGV 790

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A +L +  A +L GG GGG+   A +GG +  K D+A+    SF++K
Sbjct: 791 KNAP---LKAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842


>gi|25010884|ref|NP_735279.1| alanyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|41018224|sp|Q8E600|SYA_STRA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|23095263|emb|CAD46473.1| Alanyl-tRNA synthetase [Streptococcus agalactiae NEM316]
          Length = 872

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  + + K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  L
Sbjct: 858 ASKIAELLAAVAENL 872


>gi|78778430|ref|YP_396542.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
 gi|123554842|sp|Q31DD9|SYA_PROM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78711929|gb|ABB49106.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312]
          Length = 886

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/908 (35%), Positives = 505/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W+   G+  D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSVFHEDEESAKIWRDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ + +  +   L   +IDTGMGLERMA +LQEK N
Sbjct: 186 K-GLQNIDLEDGDRFIEFYNLVFMQYNRDSNGKLTDLKFKNIDTGMGLERMAQILQEKQN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ   ++  + Y   +  N ++ ++I DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIATVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++  +I     ++ +D+  F 
Sbjct: 365 ETLERGEKLLDELIS--SGQKLISGFKAFELYDTYGFPLELTVEIAEENSIS-VDVKGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +   T E       + +  T F GYDLL                
Sbjct: 422 EEMNAQKERAKAASSNIDL-TLEGSLEREIDLFNKTVFNGYDLL---------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I     +V++A  GQKV +V DQT FY E+GGQ+GD G      +
Sbjct: 465 -------LSEAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKDL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + +V +K   +F+H+  +++GIL     +   +   NR + + NH+ATHLL  AL +
Sbjct: 518 EVLVDNVMRKKN-VFLHYGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKS 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +A
Sbjct: 577 VVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV+V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831
           ++          S   +   + + + I  +D   L+S    L   + +  I+++G     
Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   ++ + +D +    +A  +    A++  GG GGG+P+ AQ+G  + +K   A+ 
Sbjct: 812 ENRKLLFVVSLGDDPVKIGLHAGKIINEIARICSGG-GGGKPNFAQAGAKDIDKLSDALD 870

Query: 891 GVASFLKK 898
              ++L+K
Sbjct: 871 YAKNYLQK 878


>gi|218129222|ref|ZP_03458026.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697]
 gi|217988600|gb|EEC54920.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697]
          Length = 873

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 495/919 (53%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PGS   +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   + G  Y       +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL    +   DI  F+  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENDMTA-DIKEFDAEMQQQKQRARNA-----AAVETGDWITLQE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D+TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLDKTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKE-NNLPIH--ITKKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + ++ L +    +  ++ G + +
Sbjct: 674 GNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAP-DLSGAIRK 732

Query: 763 IWEEY----RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             EE     ++++    +++ QL  + L    +I  V  +    + + +  +K++   L+
Sbjct: 733 YIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKVIKFCAAMIPADAIKNIAFQLR 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I   +  + G   E K  + ++++++L+     A +L + +AK++ GG GGG+PH A 
Sbjct: 793 GEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFAT 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 852 AGGKNPDGLSAAVDKVIEL 870


>gi|94988809|ref|YP_596910.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94992695|ref|YP_600794.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|205830223|sp|Q1JB08|SYA_STRPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830224|sp|Q1JL53|SYA_STRPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94542317|gb|ABF32366.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94546203|gb|ABF36250.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
          Length = 872

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/913 (35%), Positives = 489/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++    IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKHDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|225026503|ref|ZP_03715695.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353]
 gi|224956191|gb|EEG37400.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353]
          Length = 867

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/901 (36%), Positives = 499/901 (55%), Gaps = 48/901 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T+RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTDRHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDADRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y ED+EAF +W+   G++ ++I +    DNFW     GPCGPCSEI++D+GE    G PG
Sbjct: 117 YLEDDEAFAIWRDEIGIAPERIFKFGKEDNFWEHGA-GPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 SS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            +   + +RY+E+WN VF QFE         L + +IDTGMGLER+A ++Q+  + +D+D
Sbjct: 176 CTVGCDCDRYMEVWNNVFTQFENDGHNNYTTLKQKNIDTGMGLERLAVIVQDVGSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             + L     +V    Y+ N  + ++ R+I DH+RS++F+I+DGI+P+NEGRGYVLRRI+
Sbjct: 236 TIRSLRDKICEVAKKTYKENEQDDISIRLITDHIRSATFMISDGIMPSNEGRGYVLRRII 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  L   +       YPEL + K  I   +  E+ +F KT+D+G
Sbjct: 296 RRAARHGRLLGIEGKFLAELSKTVIEGSKDGYPELEEKKDFIYNVIIQEEGKFNKTIDQG 355

Query: 366 LVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   + +  +  L+G  AFKLYDT+G PLD+ ++IL  +G   ++  +F   + 
Sbjct: 356 LAILADLEESMKEKGVKELDGQDAFKLYDTYGFPLDLTKEILEEKGYT-VNEEAFQTCMN 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ +AR+          +   +   +    + F+GY+                      
Sbjct: 415 EQKEKARSARKTTNYMGADVTVYESIDPSVTSTFVGYETQE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S +  +    E+ E    GQ   +  D+TPFYA  GGQ  D+G          +
Sbjct: 456 ----CDSKITVMTTDTELTEALTDGQAGTIFVDETPFYATGGGQHADSGVITCKDGEFVV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DV K   G   H   V +G+ +   ++ L+++   R   +  HSATHLL  +L T+LG+
Sbjct: 512 EDVVKMLGGKIGHIGHVTKGMFKVGDTVTLSVNKAQRADTAKGHSATHLLQKSLRTVLGN 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q+GS +  D LRFD +H + +T+ EL  +E  VN+ IA++L V T IM+ ++A  +G
Sbjct: 572 HVEQSGSYVDKDRLRFDFSHFQALTAEELAEVEKMVNEKIAEDLTVSTEIMSVDEAKNTG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D+VRVV++     G  S   C GTHV  TG I    I+SE+ + AGIRRI
Sbjct: 632 AMALFGEKYGDKVRVVTM-----GDFSKEFCAGTHVPHTGVIKAFKIISETGVAAGIRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     + + +++ L   A   K     +  +++ + +E + L   + K K Q+  
Sbjct: 687 EALTGDGVMKYYLDEEKTLHEAAKAAKAEPHKLAEKIQSMLDEIKALSAENEKLKDQIAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            ++        +  D   +   + +VD   L+++ D L+ KI SG+++L       K ++
Sbjct: 747 SEVADVMDQVVEAGDYKVLPVSVKDVDMNALRTLGDDLKGKIGSGVVILAS-DMGGKVNL 805

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           ++  T+D +    +A  + + +A ++GGGGG GRP+MAQ+GG N      A+       K
Sbjct: 806 IVTATDDAVKAGAHAGKIIKEAAALVGGGGG-GRPNMAQAGGKNPAGIKAALEKAVEIAK 864

Query: 898 K 898
           +
Sbjct: 865 E 865


>gi|227510197|ref|ZP_03940246.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190402|gb|EEI70469.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 887

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 504/919 (54%), Gaps = 65/919 (7%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +S   IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 8   MKTLSSSQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 68  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LY+TVY +D +A K W+ + G+S D II I   DNFW + + GP GP SEIF
Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G       P   E     E +R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E  +  K  G    + V  R+I DH R+ +  I D
Sbjct: 240 RVVSIFQHAKTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG     +  L P +   + S YPE+++ +  IE
Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQRDYIE 359

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL LL  V++         ++G  AFKLYDT+G P ++ ++   
Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL G+D   F   + +Q+ RAR    G  S   ++    L +    ++++GYD L   
Sbjct: 420 EVGL-GVDKQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKDDSEYVGYDTLDVK 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V E+ +   +EV+FD+TPFYAE GG
Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513

Query: 527 QLGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G  + +       + DVQ    G  +H    +  +++      L +D     ++ 
Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVK-GQRYHLVVDKLFHSRVE 572

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  VN  I 
Sbjct: 573 KNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIF 632

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV +T +
Sbjct: 633 KEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRD 687

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IVSES + AG+RRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  RVE++
Sbjct: 688 IGLFKIVSESGVGAGVRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQL 747

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E + L+      + +L  +          +      ++ II +    +L+ + D  + 
Sbjct: 748 QDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRS 807

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L G    +KA++++ V+++ + D   A DL +  A  + GG GGGRP+MAQ+
Sbjct: 808 KRLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQA 865

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +  D+A+     +L
Sbjct: 866 GGKDPSGLDKAMKAAVEWL 884


>gi|91202499|emb|CAJ72138.1| strongly similar to alanyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 885

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/919 (38%), Positives = 514/919 (55%), Gaps = 58/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  FL FF+K  H + P  SL+P  D TL+FT +GM  FK++F G+ +   +  
Sbjct: 1   MNTGEIRNKFLTFFEKKSHVIWPGDSLVPQGDATLLFTGAGMNQFKDMFLGKGRLNIKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    DL+NVGRT  HHTFFEMLGNFSFG YFK   I  AW+ L +E  L 
Sbjct: 61  TTCQKCLRTG----DLENVGRTASHHTFFEMLGNFSFGDYFKRETIAWAWEFLVQELRLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSEIF 176
           + +L+++VY +D E++++W+K   +   KI     NDNFW          GPCGPCSEIF
Sbjct: 117 EEKLFVSVYKDDPESYEIWEKHIRILKSKIYSYGENDNFWPANAPAQGPNGPCGPCSEIF 176

Query: 177 FDQGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +DQG  +  G      + + +R++EIWNLVF QF+++       LP  ++DTGMGLERMA
Sbjct: 177 YDQGAGVGCGREECEPACDCDRFVEIWNLVFTQFDRKEDGRLEPLPNKNVDTGMGLERMA 236

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILP 292
            V+Q    N+DID+F  +I++ E +T ++Y     N V  R I DH+++S F IADG+LP
Sbjct: 237 RVMQGVPTNFDIDIFAPVIKSIEDITHLRYHDKKENAVCMRRIADHVKASIFCIADGVLP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NEGRGYV RR++RRA+     LG  E  +  L+P +   M   YP++ Q +  I   ++
Sbjct: 297 GNEGRGYVERRLLRRAIRDGAQLGLKECFLYKLVPIISDLMQDYYPDIKQRRENIARIIK 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE+E+F +TL+ G V L  ++  + K++I  L G  AFKLYDT+G PLD+ + IL   G 
Sbjct: 357 SEEEKFLETLELGTVRLKELMDTMQKNKIKELPGKEAFKLYDTYGFPLDMTELILKEHGF 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           +  D       L+ QR +AR+ S   G          +KE    T F+GY+         
Sbjct: 417 SM-DSAGVEVELKRQRMQARSSSSMTGQVFDAGFLGKIKEISKGTTFLGYE--------- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                          +   + + AIVQ   ++E+A +G +V +V DQTPFY E+GGQ+GD
Sbjct: 467 --------------KDSCRARIIAIVQGDYLIEKAEAGSEVSIVLDQTPFYGESGGQIGD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    +G  + ITD +K  +   +H   + +GI+RT   +   ID   R  +  NH+AT
Sbjct: 513 TGILESEGSHICITDTKKN-DSFIIHIGKITKGIVRTGDMIDARIDTHRRGLIKRNHTAT 571

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH  L  ++G H  Q GS ++PD LRFD  H   +T  E+  IED VN+ I +N  V 
Sbjct: 572 HVLHWVLRNVIGRHAEQAGSMVSPDRLRFDFHHFSSLTKEEINRIEDLVNEKIMENALVS 631

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +    ++A  +GA AL G KY +RVR+VS+     G  S  LCGGTH+++TGEI    I
Sbjct: 632 VKEQTLQEARNAGAVALFGEKYEERVRMVSI-----GDFSKELCGGTHINNTGEIGPFRI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V ESS+ AGIRRIEAITG  A +    ++E ++ L   L   + ++  + +E+  E +KL
Sbjct: 687 VGESSVAAGIRRIEAITGISALTRDREKEEIVQELCGILNACEEDLSSKTQELLNEVKKL 746

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                K+K +  +E +        +++ VN ++  I    + +++   D L K  +   +
Sbjct: 747 HKELHKQKQKELLEKIDSLSVTAKEVSGVNIITKRIDNASADDMRRTADMLMKSEKETAV 806

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            L G     +  V+I ++  L  R  +A  +++  AK++GGGGG GRP MAQ+GG    K
Sbjct: 807 AL-GSVLNGRVIVIISLSTGLASRGLHAGSISKEVAKIVGGGGG-GRPEMAQAGGQVVGK 864

Query: 885 ADQAIAGV-----ASFLKK 898
            D+A+           L+K
Sbjct: 865 LDEALDFAEMLFSKEILQK 883


>gi|198276957|ref|ZP_03209488.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135]
 gi|198270482|gb|EDY94752.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135]
          Length = 872

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSILKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAASYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    ++G KY  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKTDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LL+  ++         ++G  AF LYDT G P D+ + 
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNETKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   GL   D+  F   +++Q+ RAR       +      W +LKE  G T F+GYD  
Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V  +TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSETPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + I D +K+   + +H A  ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIDIIDTKKE-NNLPIHIA--KKLPEHLEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +++ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQIREVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEA+TG +         + +  L +    +  ++   + +
Sbjct: 674 GKIGMVKIISESSVAAGVRRIEAVTGAKVEEMFDTVQDTINDLKALFNNAP-DLKAAISK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    ++ +  V++       ++N +  I  +  + +  +K++   L+ 
Sbjct: 733 YIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIKAVLPMPADAVKNIAFQLKG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +    + +++G   E K  + + ++ED +    NA  L R +AK++ GG GGG+PH A +
Sbjct: 793 QFTENLFVVIGSVFENKPLLTVTMSEDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 852 GGKNPDGLNTAVDKVVEL 869


>gi|224025892|ref|ZP_03644258.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM
           18228]
 gi|224019128|gb|EEF77126.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM
           18228]
          Length = 872

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+  I  A++ L     L
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAYEYLVTVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W +      D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTVFEGSPEEGLARDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    ++G KY  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKVDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LL+  ++         ++G  AF LYDT G P D+ + 
Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNEAKAAGKTEISGVDAFTLYDTFGFPFDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   GL   D+  F   +++Q+ RAR       +      W +LKE  G T F+GYD  
Sbjct: 419 ILRENGLTA-DVKGFEAEMQKQKERARNA-----AAVETGDWVTLKE--GETTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   + I D +K+   + +H  I ++     +  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIDIIDTKKE-NNLPIH--ITKKLPEHLDAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TPD LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPDSLRFDFSHFQKVTPEQLREVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENIPLTEYRNLPIEKARELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEA+TG +         + L  L +    +  ++   + +
Sbjct: 674 GKIGMVKIISESSVAAGVRRIEAVTGAKVEEIFDTVQDTLSDLKALFNNAP-DLKAAISK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ + +V++       D+N +  I  +  + +  +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEEFMKEKEASVKNKLIEGAKDINGVKVIKAVLPMPADAVKNIAFQLKG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +    + +++G   + K  + + ++ED +    NA  L R +AK++ GG GGG+PH A +
Sbjct: 793 QFTENLFVVIGSVFDNKPLLTVTMSEDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNPDGLSAAVDKVIEL 869


>gi|302525836|ref|ZP_07278178.1| alanyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302434731|gb|EFL06547.1| alanyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 887

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/918 (36%), Positives = 508/918 (55%), Gaps = 59/918 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   I   FL  F+  GH  +PS+ LI  +DP L+F N+GMV FK  F G+  P Y   
Sbjct: 1   MDTHEITDRFLRHFESRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIENAWELITKSQDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY++D EA  LW+K++GL +D+I      DN+W M   GP GPCSEI+
Sbjct: 116 GFGLDPDRIWATVYEKDSEAAGLWRKLTGLPSDRIQVRDGKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ  + ++  +        LPK +IDTGMG+
Sbjct: 176 YDRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDQSPKLGHPPIGELPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+AT+LQ   N Y+ DL + +I  +E+ +G +Y  N  + V  RVI DH R+   LI D
Sbjct: 235 ERVATILQGVENVYETDLVRPVIGRAEEFSGRRYGANHADDVRFRVIADHARTGVLLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +   RLLG  EP++      +   MG  YPELI     I 
Sbjct: 295 GVTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVSQTMGPTYPELISGFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E +R E+E F  TL  G  + D   +   K   ++L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 EVVRVEEEAFLATLTSGSRIFDLAAAETKKGGGDVLAGDKAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F   +EEQR RA+A +    SG  +   +  + E++G T+F+GY  L+ 
Sbjct: 415 EQGLT-VDEAGFRTLMEEQRKRAKADAAARKSGHGDLSEYRKVLEQHGETEFLGYTELQA 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V  +++ G  V    +G+K E+V D+TPFYAE+G
Sbjct: 474 D-----------------------AKVVGLLEDGLPVRSVAAGRKAELVLDRTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG  +GDG+ L++ DVQK   G+FVH   V +G +  +  L  ++D   R  +  
Sbjct: 511 GQIADTGVLVGDGVELKVLDVQKIVPGLFVHRVEVTQGEVGIDTRLTGSVDANRRLSIER 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+    G   +Q GS   P  +RFD T    +++  L  +E  VND +  
Sbjct: 571 SHSATHLVHAAVRGAYGKRAAQAGSLNAPGRMRFDFTTPGAVSTDILTEVEQEVNDYLQT 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V +    ++ A+  GA AL G KY + VRVV     D G +S  LCGGTHV   G++
Sbjct: 631 DVEVQSYTTTKDKALELGAVALFGEKYGNDVRVV-----DMGEYSRELCGGTHVGRIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VS++S+ +G+ R+EA+ G  A  H+  +   +  LA+  KV    + GR+E++  
Sbjct: 686 GLVKLVSDASVGSGVHRVEALVGPDALKHVRKEQLLVSQLANTFKVPSDELPGRIEDVLS 745

Query: 766 EYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             +  +    + + Q               ++ V+ ++ ++ +VD   L+++   ++ ++
Sbjct: 746 RLKNAEKEIEQLRTQQVLGSAGALADKAQDVSGVSVVAEVVPDVDGNGLRALASDIRGRL 805

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               G++ L   S EK A V+   +        A  L    A+ + GG GGG+P MAQ G
Sbjct: 806 GDRPGVVALFAPSGEKVAFVVATTSAARDKGIAAGKLVPSFAEAI-GGRGGGKPDMAQGG 864

Query: 879 GPNGNKADQAIAGVASFL 896
           G N   A+QA+  + + +
Sbjct: 865 GSNPAGAEQAVTALRAAV 882


>gi|168214257|ref|ZP_02639882.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714273|gb|EDT26455.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
          Length = 879

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/909 (37%), Positives = 518/909 (56%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + 
Sbjct: 3   FMGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+G
Sbjct: 119 PKDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIGV-GPCGPCTEIHFDRG 177

Query: 181 ECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E           + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q
Sbjct: 178 EGKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  +GL  +D
Sbjct: 358 RFNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ ++EQR RAR          +E+   +  +    T+F GY  L           
Sbjct: 417 IENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S V  +    E   E   G+   ++ D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------LNSKVIVLGNNEEFKAELKEGEDGFLLTDKTPFYAEMGGQVGDRGNI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH
Sbjct: 514 TSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M
Sbjct: 574 EALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES
Sbjct: 634 SLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
            + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++   ++
Sbjct: 689 GVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEI 748

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL    ED       +I  V  ++  + +VD   L+ + D ++ K+ +GI++L  
Sbjct: 749 AELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLSDKVRNKLNNGIVVLAS 808

Query: 830 ISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +++ + T++ L +  +   + +  A V+GGGGG GRP MAQ+GG N     +A
Sbjct: 809 -DNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGGG-GRPDMAQAGGKNPENIAKA 866

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 867 LEKAKEVVE 875


>gi|22536974|ref|NP_687825.1| alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76799299|ref|ZP_00781465.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|41018221|sp|Q8E0C4|SYA_STRA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|22533828|gb|AAM99697.1|AE014228_18 alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76585342|gb|EAO61934.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
          Length = 872

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I  +L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNDL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  + + K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  L
Sbjct: 858 ASKIAELLAAVAENL 872


>gi|172036637|ref|YP_001803138.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|205830042|sp|B1WYQ5|SYA_CYAA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171698091|gb|ACB51072.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 879

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/908 (37%), Positives = 509/908 (56%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR  FL+F+ ++ H++LPS+SL+P  DPT++ T +GM+PFK IF GQ++P +  
Sbjct: 7   FLTGNQIRDRFLQFYAQHNHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKQPDFPR 65

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L
Sbjct: 66  ATTSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYRL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               + ++V+++D+EAFKLW+++ G+   +I R+   DNFW    TGPCGPCSE+++D  
Sbjct: 122 PPENIVVSVFEKDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFH 181

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             + G      E+  R+IE +NLVFM++ +  +     L   +IDTGMGLERMA +LQ+ 
Sbjct: 182 PEL-GEDNIDLEDDSRFIEFYNLVFMEYNRDAEGNLAPLQNKNIDTGMGLERMAQILQKV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            NNY+ DL   +I+ +  +  + Y+       V+ +VI DH+RS   +IADGI  +N  R
Sbjct: 241 PNNYETDLIFPIIETAANIANIDYQKATEKTKVSLKVIGDHVRSVVHMIADGITASNTDR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR + + RL+G     +  +         +AYP++ + +  I+  L  E+  
Sbjct: 301 GYVLRRLIRRVVRHGRLIGIEGQFIKQVAETAIELSENAYPQVRERESFIKGELEREETA 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL+RG  LL  ++        ++G  AF LYDT+G PL++ Q+I     L  ++I  
Sbjct: 361 FLKTLERGEKLLAEIIEKTETQGQISGVDAFTLYDTYGFPLELTQEIAEESNLT-VNIEE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   + +Q+ R++A    +   T +     L E    T F+GY  L+             
Sbjct: 420 FEAEMRQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTAFLGYTDLQ------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                     +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G   G+
Sbjct: 466 ----------LTAKVEAVLIQGKTVDTAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGE 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DVQK++ GIFVH   VERG +     +  TID   RRQ+  NH+ATHLL  AL
Sbjct: 516 NLVIRVEDVQKES-GIFVHFGRVERGSVSVNDQVTATIDRACRRQVQANHTATHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   +SQ GS +  D LRFD    + +TS EL+ IED +N  IA+       +M  E
Sbjct: 575 KKVVDKSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHETEIAVMPIE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  I+SES I 
Sbjct: 635 TAKEKGAIAMFGEKYGSEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGIS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  Q      
Sbjct: 690 SGVRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQKELEAV 749

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K  L V            I +   +   + E+D+K L++  + LQ+K+  G ++L  I  
Sbjct: 750 KQDLAVAKSDQLLTEAESIGEFKLLVSDMGEMDAKALQTAAERLQQKLGEGAVILGSIPS 809

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K S++   ++ +    +  A       AK+ GGGGG GRP++AQ+GG   +K  +A+ 
Sbjct: 810 EGKVSLVAAFSKKVNQEKQLQAGKFIGQIAKICGGGGG-GRPNLAQAGGREPSKLSEALL 868

Query: 891 GVASFLKK 898
                L +
Sbjct: 869 TAKEQLTE 876


>gi|257468000|ref|ZP_05632096.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062286|ref|ZP_07926771.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313687962|gb|EFS24797.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 866

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/909 (36%), Positives = 513/909 (56%), Gaps = 58/909 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK  F GQ++  Y  
Sbjct: 1   MLTGNQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+   +
Sbjct: 60  VTTYQKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWSWEFVTEVLKI 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+++V+  D+EA ++W +      ++++R+  ++N+W+   TG CGPCSEI  D G
Sbjct: 116 DKDKLWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLG 175

Query: 181 ECIPGGLP---GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G      G      R+IEIWNLVF ++ +        LPK +IDTG GLER+A ++
Sbjct: 176 PAYGGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q K+NN++ DL   L++ + ++T  +Y  +     + +VI DH R+ +FLI DG++P+NE
Sbjct: 236 QGKSNNFETDLLFPLVEEAVKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ + RLLG +E  +  ++  + + M +AYP+L      I++ ++ E+
Sbjct: 296 GRGYVLRRILRRAVRHGRLLGQSELFLYKMVDKVVSMMENAYPDLRSNIDHIKKVVKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F +TLD+G+ L++  +  L    I  L+G+V FKLYDT+G P ++ ++I   + +   
Sbjct: 356 EKFSRTLDQGMQLVNQEIEKLKAAGITKLDGEVTFKLYDTYGFPYELTEEICQEKEIEIS 415

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
               F   + EQ+ +ARA    +     +       +KYGAT+F GY  L+ +  +   R
Sbjct: 416 -KEEFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDKYGATEFTGYTTLKDTGKLLSAR 474

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                K                                 ++FD TPFY E+GGQ  D G 
Sbjct: 475 DGKDGKK-------------------------------LMIFDTTPFYGESGGQAADIGI 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G+G   ++ DVQK+ +GIF H   V +G         L +D  NR   + NH+ATHLL
Sbjct: 504 ITGNGFEGKVIDVQKQ-KGIFTHTVEVLKGTPIEGEEYFLEVDEANRMATAKNHTATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS +  + LRFD  H + +T  EL+ +E+ VN+ IA+ + V    
Sbjct: 563 HEALREVLGSHVQQAGSFVNGERLRFDFNHYEAMTGEELEKVEELVNEKIAEAINVSVAD 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ ++A  +GA AL G KY D VRVVSVE       S  LCGGTH+ + G+I L  I SE
Sbjct: 623 MSMDEAKKAGATALFGDKYGDVVRVVSVEG-----FSIELCGGTHIDNIGKIGLFKIESE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           + I AGIRRIEA+TG+ A   +   +  LK++   +K  + N++ RVE++ E  ++    
Sbjct: 678 AGIAAGIRRIEAVTGKGAYKAVKNIEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKE 737

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             + K     ++      +   I  V  +        + +L+ ++D ++ K+ + +++L 
Sbjct: 738 LEELKSRFTQIEAQALAENSEVINGVTVIMKTFKTTTADDLRKMVDYVKDKMANTVVVLA 797

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S   KA     VT++L  +  A +L + +A V+ GG GGGRP  AQ+GG +  K  +A
Sbjct: 798 --SGADKAIFAAGVTKELTSKVKAGNLVKEAA-VITGGNGGGRPDFAQAGGKDATKIQEA 854

Query: 889 IAGVASFLK 897
           +  V   LK
Sbjct: 855 MNAVKETLK 863


>gi|81299685|ref|YP_399893.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|81168566|gb|ABB56906.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
          Length = 899

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/905 (38%), Positives = 512/905 (56%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 30  SGDQIRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 88

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 89  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 144

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 145 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 204

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 205 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 263

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +    V+ +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 264 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 323

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 324 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 383

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 384 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 440

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   T+F+GY                   
Sbjct: 441 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPTEFVGYG------------------ 481

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 482 -----DAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 536

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 537 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 595

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 596 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 655

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 656 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 710

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 711 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 770

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 771 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 830

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGGG GRP++AQ+GG + +K  +AIA  
Sbjct: 831 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGG-GRPNLAQAGGRDASKLPEAIAAA 889

Query: 893 ASFLK 897
              LK
Sbjct: 890 LDQLK 894


>gi|149924852|ref|ZP_01913189.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
 gi|149814267|gb|EDM73872.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1]
          Length = 919

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/930 (38%), Positives = 519/930 (55%), Gaps = 51/930 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++  +IR+ FL FF++ GH  +PSS L+P +DPTL+F N+GMV FK++FTG++K  Y   
Sbjct: 5   ADAHAIRSAFLSFFEERGHAAVPSSPLVPFDDPTLLFVNAGMVQFKDVFTGRDKRDYTRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ Q+C+RAGGKHNDLDNVG T RHHT FEMLGNFSFG YFK  AI+  W+ LT+  +L 
Sbjct: 65  TSAQRCLRAGGKHNDLDNVGFTPRHHTLFEMLGNFSFGDYFKRDAIRWGWEFLTQVLELP 124

Query: 122 QRRLYITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
             +L ++V++        D+EA+ LW +I  +  ++I      +NFW M +TGPCGPCSE
Sbjct: 125 AEKLVVSVFNGEGENAPFDQEAYDLWAEI--IPKERIYAFDAKENFWQMGDTGPCGPCSE 182

Query: 175 IFFDQGE---CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           I   +GE      GG P  G + E ++Y+E+WNLVFMQ+E+    E   LP  S+DTG G
Sbjct: 183 IHIWRGEGGAPPDGGKPGKGPAFEDDKYMELWNLVFMQYEKLASGEMTKLPAPSVDTGAG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIAD 288
           LER+A VL+    NY+  LF  ++   + + G+  ++G    ++RVI DH R+++FLIAD
Sbjct: 243 LERLAAVLEGVETNYETGLFVPIVDKVKALAGVSGHQGEREASYRVIADHARATAFLIAD 302

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P   GR YVLRRIMRRA+ +A L+G  +     +   +    G AYPEL +A+ +I 
Sbjct: 303 GVTPDQTGRPYVLRRIMRRAIRHATLVGLEDLFFHEVCDEVVNRFGEAYPELREAREVIA 362

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             ++ E+E F +TL RGL  +  +L+       ++   D A  LY + G P+D+ + I  
Sbjct: 363 GAVKIEEEGFRRTLARGLRRVSKILAGLEAEGSKVFPVDEAADLYTSAGFPIDLTRVIAE 422

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLRG 465
              L  +D  +  + LE Q+  +     G G      ++F +  + G  T F+GY    G
Sbjct: 423 ENELT-LDEAAVAEKLEAQKGES--SFAGGGGSKVADVYFDIVNELGQGTAFLGYGATAG 479

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +K       +    +     +            VE A +GQ VE++FDQ+PFY E+G
Sbjct: 480 EATLKAIVIPAPEPAEGEPALEPTR-----------VESAQAGQAVELIFDQSPFYGESG 528

Query: 526 GQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+GDTG    +  G  + +T   K   G+ VHH  +  G +      VL +D   R  +
Sbjct: 529 GQVGDTGALRAVDGGAVVTVTQTSKPTGGLHVHHGELAGGSIAVGQRFVLEVDVARRDAI 588

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATH+LHHAL  +LG HV+Q GS + PD LRFD +H++ +T  E + IE  VN ++
Sbjct: 589 RRNHSATHMLHHALRKVLGKHVAQKGSLVAPDRLRFDFSHARSVTREETRRIEAEVNAMV 648

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV---EYEDGGVHSSALCGGTHVS 700
             N P  T  M+  DA  +GA  L G KY   VRVV++   E E G   S  LCGGTHV+
Sbjct: 649 LANAPTGTAEMSLADAKQAGAIGLFGEKYGAEVRVVTIGEVETEAGEERSVELCGGTHVA 708

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGR 759
             G++ L  IV+E  +  G+RRIEA+TG  A   +  + E +  +AS L+    G V+GR
Sbjct: 709 RAGDVGLFKIVAEGGVAQGVRRIEAMTGMGAVEWVQERAEVVDQVASDLRARDLGEVLGR 768

Query: 760 VEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELK 810
           +E++ EE   R  ++   KRKL          ++ +       V   +  I   D K ++
Sbjct: 769 LEKLHEELAARGREIDSLKRKLATGGGGSQASEVVEVEGGGKTVKLTARRIPVADPKIMR 828

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868
              D L+ ++ SG+++L G  ++ KA++L+  T+DL      +A  LA      +  G G
Sbjct: 829 EAADTLRDRMGSGVVVLAG-ERDGKANLLVATTKDLAKGKIVHAGKLAAALVVHV-DGRG 886

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGRP MAQ+GGP     D  +A  A  L K
Sbjct: 887 GGRPDMAQAGGPKVAGLDDVVAHAAEELAK 916


>gi|227513125|ref|ZP_03943174.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083700|gb|EEI19012.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577]
          Length = 887

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/919 (35%), Positives = 503/919 (54%), Gaps = 65/919 (7%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +S   IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 8   MKTLSSSQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 68  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LY+TVY +D +A K W+ + G+S D II I   DNFW + + GP GP SEIF
Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G       P   E     E +R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E  +  K  G    + V  R+I DH R+ +  I D
Sbjct: 240 RVVSIFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG     +  L P +   + S YPE+++ +  IE
Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQREYIE 359

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL LL  V++         ++G  AFKLYDT+G P ++ ++   
Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + +Q+ RAR    G  S   ++    L +    ++++GYD L   
Sbjct: 420 EVGL-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKDDSEYVGYDTLDVK 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V E+ +   +EV+FD+TPFYAE GG
Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513

Query: 527 QLGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G  + +       + DVQ    G  +H    +  +++      L +D     ++ 
Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVK-GQRYHLVVDKLFHSRVE 572

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  VN  I 
Sbjct: 573 KNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIF 632

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV +T +
Sbjct: 633 KEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRD 687

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IVSES + AGIRRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  RVE++
Sbjct: 688 IGLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQL 747

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E + L+      + +L  +          +      ++ II +    +L+ + D  + 
Sbjct: 748 QDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRS 807

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L G    +KA++++ V+++ + D   A DL +  A  + GG GGGRP+MAQ+
Sbjct: 808 KGLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQA 865

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +  D+A+     +L
Sbjct: 866 GGKDPSGLDKAMKAAIEWL 884


>gi|259507362|ref|ZP_05750262.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|259165073|gb|EEW49627.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 906

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/921 (35%), Positives = 494/921 (53%), Gaps = 62/921 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--QAV 61
              IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 19  THEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTA 77

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 78  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEG 133

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 134 GYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 193

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G + +  RY+EIWNLVFM+FE+     +        LPK +IDTGMG+
Sbjct: 194 YDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGV 252

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI D
Sbjct: 253 ERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILD 312

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  I 
Sbjct: 313 GVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERIL 372

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++  
Sbjct: 373 RVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAA 432

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L   
Sbjct: 433 EAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELES- 490

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+GG
Sbjct: 491 ----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGG 528

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           QLGD G  +     + I DVQK  + ++VH A+V  G L     +V  +D Q R      
Sbjct: 529 QLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQA 588

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ +  +
Sbjct: 589 HTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTD 648

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 649 WAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIG 704

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ ++
Sbjct: 705 PVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDK 764

Query: 767 YRKLQLIHA---KRKLQLNVEDLS--CHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +   A   +R+L    E+      +I  +  +   +   +D+ +L+++   L+ K+
Sbjct: 765 LKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKL 824

Query: 821 --QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
               G++++   S++  K   +   T+  + R  ++ +L +L    +  G GGG+P MAQ
Sbjct: 825 SNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQ 883

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G + +  D A   V + L+
Sbjct: 884 GSGSDIDGLDAAFNAVRAELE 904


>gi|257063513|ref|YP_003143185.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
 gi|256791166|gb|ACV21836.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476]
          Length = 889

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/928 (34%), Positives = 493/928 (53%), Gaps = 77/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT--GQEKPVYQ 59
              + IR  +L+FF+    + LPSSSLIP +DP+L+ T++GMV FK  F    +  P Y 
Sbjct: 4   MTTAEIREKYLKFFEGKACKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPAYV 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
              TVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFK+     AW+    E +
Sbjct: 63  GAATVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGKYFKKEMCAWAWEFCLNELE 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY TV+++D+E  ++WK + G+    I R+  +DNFW    TGPCGPCSEI++DQ
Sbjct: 119 LPKEKLYFTVFEDDDETIEIWKSL-GVEDSHISRLGEDDNFWRAGPTGPCGPCSEIYYDQ 177

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  +   + +R++E WN VF Q++ Q       LP  +IDTGMGLERMA ++
Sbjct: 178 GPEFGCGDPNCAPGCDCDRFLEFWNCVFTQYDGQEDGTLAPLPTKNIDTGMGLERMAAIM 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY------------EGNNIVNHRVIVDHLRSSSFL 285
           Q   +N+D D+ + LI   E+++G  Y            +G+  ++ R+  DH RS +F+
Sbjct: 238 QGVQSNFDTDVIRGLIAVGERLSGKSYVGKANTVGHGSEQGDIDLSLRICADHSRSVAFM 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           IADGILP+NEGRGYVLRR++RRA+ + R LG     +   +  +   MG  YPE+++ + 
Sbjct: 298 IADGILPSNEGRGYVLRRLLRRAVMHGRKLGIEGAFLNEYVAVIVDLMGHVYPEIVENRA 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L+E  + SE+  F  TL +G   L   L +L +   L+GDVAFKL+DT+G P+++ ++I 
Sbjct: 358 LVESVIASEEGAFANTLRQGQAYLAEALKNL-EGTTLSGDVAFKLHDTYGFPVEVTEEIC 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDL 462
              G++ +D   F + + EQR RARA +             I+  L ++ G T+F+GY+ 
Sbjct: 417 SESGIS-VDHARFEECMNEQRERARAATKDDAEAAWSTYGSIYADLLKELGPTKFVGYEG 475

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + +KAI++ GE+V     G++ E+V D TPFYA
Sbjct: 476 TDYEG----------------------ATIKAIIRNGELVGSLHRGEEGEIVLDTTPFYA 513

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRR 581
           E GG++GDTG   G     ++ D +   +G+  H   V  G     + ++  ++D Q R 
Sbjct: 514 EMGGEVGDTGMLHGTFGVSEVLDTKAPEKGLVCHRVRVIEGDCHAVDETVNASVDAQRRA 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++ NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH + +T  ++  +E   N+
Sbjct: 574 LITRNHTATHLLHAALREVLGDHVKQKGSYVGPDRLRFDFTHFEGMTPEQIAEVERVANE 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + Q +P      +   A  +G  AL G KY D VRVV     + G  S  LCGG HVS+
Sbjct: 634 KVMQAIPTTIYETSLNAAREAGVTALFGEKYGDTVRVV-----EAGEFSRELCGGCHVSN 688

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI  + IVSE S  A +RRIEA+T   A +++   + +LK  A+ L+V   +V  R  
Sbjct: 689 TAEIGFIKIVSEGSSAANVRRIEALTSVEALNYMNAVEAELKETAAELRVPMFDVSERTA 748

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF----MSHIISEVDSKELKSVMDALQ 817
                 +  +      K      +++ H    VN     +   I  +D+  L++  D ++
Sbjct: 749 SNLATIKDYETKAKNAKKMAAEGNIAEHVKDVVNVGYPLLVVRIDGLDTGGLRNAWDIIR 808

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR----- 871
            ++++    ++G     K  ++   T++ +   FNA  + +  A         G      
Sbjct: 809 ARMETPGACIIGTVNNDKPIIMAAGTDEAVAAGFNAGAVIKNIA---------GNIKGGG 859

Query: 872 ---PHMAQSGGPNGNKADQAIAGVASFL 896
              P MAQ+GG + +  D A+      L
Sbjct: 860 GGKPSMAQAGGKDASGLDAALQAARDML 887


>gi|57505123|ref|ZP_00371068.1| alanyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|305433060|ref|ZP_07402216.1| alanine--tRNA ligase [Campylobacter coli JV20]
 gi|57019098|gb|EAL55813.1| alanyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|304443761|gb|EFM36418.1| alanine--tRNA ligase [Campylobacter coli JV20]
          Length = 842

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/895 (39%), Positives = 508/895 (56%), Gaps = 58/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            +R+ +L FF+  GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+         T+ 
Sbjct: 2   DVRSEYLNFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LY+TV++ D+EAF+LW+K   +  ++I R    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHESDDEAFELWQK--HIQKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEYF 178

Query: 185 -GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERSADGKLTPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++ G  Y   +  + RVI DH+RSS FL+A G     EGRGYVLRR
Sbjct: 239 FDSSLFMPIIDEIAKLCGKTYIYESGASFRVIADHIRSSVFLLAQGTSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  +P M +L+  +C  MG  Y  L + K  I+E +  E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGLKKPFMYNLVDVVCKLMGEHYTYLNEKKDFIKEQICLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    E+ +G+VAFKLYDT+G PLD+ QD+L  + L  +D   F + + 
Sbjct: 359 NGIEIFNKELKNTK--EVFSGEVAFKLYDTYGFPLDLTQDMLREKNL-VVDEAKFEELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G       + +L EK+G   F+GY+                      
Sbjct: 416 EQKNRAKASWKGSGDKVASGDFKNLLEKFGENCFVGYEKTE------------------- 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 + V A++ +      ++ G    V+ D TPFYA +GGQ+ DTG         ++
Sbjct: 457 ----CQATVLALLDEDFKEVSSLKG-LGWVMLDNTPFYATSGGQIADTGYI----GTSEV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK            E   ++    ++  ID   R Q + +HSATHLLHHAL  ILGS
Sbjct: 508 LDTQKFFNLNLSLVKANEE--IKLNDKIIAKIDTDKREQTARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  EDA  SG
Sbjct: 566 HISQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIISSSEAILENMPLEDAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A         +  +L   LK +  ++           +KL+    K K +L  
Sbjct: 680 EAVVSRAALEFCKTFMNENLNLKEELKSNDLSLG---------VKKLKNEILKLKNELKN 730

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            + S    +++N +   +  V+S ++K+++D  + K +   I+L+  +K+ K ++   V 
Sbjct: 731 SNKSQLNSSNINGVQICVECVESGDIKTMIDEFKNKFEKAAILLI-QTKDDKITLAAGVK 789

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   A +L +  A++L GG GGGR   A +GG + +K D+A+      ++K
Sbjct: 790 ---NCPLKAGNLVKNIAQIL-GGNGGGRDDFATAGGKDISKIDEALKQALDLIQK 840


>gi|169334468|ref|ZP_02861661.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259185|gb|EDS73151.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM
           17244]
          Length = 874

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/905 (37%), Positives = 525/905 (58%), Gaps = 46/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +++ +R  FLEF++  GH  L S SL+P ND +L+  NSGM P K  F G+E P  + VT
Sbjct: 5   SLNELRKMFLEFYESKGHLRLESFSLVPHNDKSLLLINSGMAPLKPYFIGEEVPPKKRVT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R      D+DNVG+T RH TFFEMLGNFSFG YFK+ AI  AW+ LT++  LD+
Sbjct: 65  TCQKCIRT----PDIDNVGKTARHGTFFEMLGNFSFGDYFKKEAIAFAWEFLTEKIGLDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY+ D+EA ++WK   GL+ ++I R+   DNFW +   GPCGPCSEI+ D+GE 
Sbjct: 121 DKLYVSVYENDDEAAEIWKNDIGLTDNRITRLGKEDNFWEIGL-GPCGPCSEIYVDRGEE 179

Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                P  G   + +RY+E+WNLVF QF++  +     L   +IDTGMGLER+A  +QE 
Sbjct: 180 YGCDRPTCGVGCDCDRYMEVWNLVFTQFDKDKEGNYNKLEHPNIDTGMGLERLAAYVQEV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D  ++++    +++G KY    N+ V+ RVI DH+RSS F+ +DGIL +NEGRG
Sbjct: 240 DNIFEVDTIRYILDYICEISGKKYGVNENDDVSIRVITDHIRSSVFMASDGILTSNEGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVL+RI+RRAM + +LLG     M  +   +    G AYP L + +  I + +  E+E+F
Sbjct: 300 YVLKRILRRAMRHGKLLGIEGHFMEGVAKKVIEISGEAYPALREKETTILKLINIEEEKF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +T+++GL ++D ++++L K + L G  AFKLYDT+G PL++ ++IL  +GL  +D   F
Sbjct: 360 NETVNQGLSMIDELIANL-KGDTLGGLDAFKLYDTYGFPLELTEEILEEKGLK-VDKNGF 417

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A++EQ+ +AR+        + +    +      +T+F GY+ L               
Sbjct: 418 EKAMQEQKDKARSARNNKEIVSYKGDLTNFIANLPSTEFSGYESLSD------------- 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V  I++  E ++    G+   V+F++TPFYA +GGQ+ D G    D 
Sbjct: 465 ----------KGKVIEIIKDNEAIDILNEGEIGLVIFNRTPFYATSGGQVHDIGKIEDDK 514

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  ++  V K  +  FVH   +  G L  +    +T+D QNR     NHSATHLLH AL 
Sbjct: 515 VNAKVKSVTKSGD-KFVHEVEIISGSLEADKEYSMTVDKQNRLNTERNHSATHLLHKALK 573

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV+Q GS +  + LRFD +H + +T+ EL  IE  VN  I     V     + ++
Sbjct: 574 EVLGEHVNQAGSYVDSERLRFDFSHFEKVTNEELDEIEKRVNAEILNKDEVNYFETSIDE 633

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY   VRVV +     G +S  LCGG HV++T +I +  I+SESS+ +
Sbjct: 634 ARKLGATALFGEKYGSNVRVVKM-----GDYSIELCGGCHVNNTNDISMFKILSESSVAS 688

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776
           G+RRIEAITG+ A    + +  +L+++   L+++  N++ +V+E+  + + L  +L   +
Sbjct: 689 GVRRIEAITGKCAIEESLEKYHELQTIKDKLRLNNNNIIEKVDELLNKNKSLLKELEAFR 748

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKE 833
           ++   +V         DVN    + ++VD     +L+ + D ++ K+++ I+ LV ++ E
Sbjct: 749 KEANKDVVSGIIDNAFDVNGTKCVFAKVDGLNVNDLRELSDKVKDKVENVIVFLVSVAGE 808

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K   +     E + D FN     +  A  +G G GGGRP MAQ+G  + +KAD A+    
Sbjct: 809 KGFMIASASKEAVKDGFNCGKFIKDVAVSIGSG-GGGRPDMAQAGIKDISKADMALENAK 867

Query: 894 SFLKK 898
            F+K+
Sbjct: 868 GFIKE 872


>gi|41018232|sp|Q8FT23|SYA_COREF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 890

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/923 (35%), Positives = 494/923 (53%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--Q 59
                IR  F   F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              + LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGYGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGM 228
           I++D+G    G   G + +  RY+EIWNLVFM+FE+     +        LPK +IDTGM
Sbjct: 176 IYYDRGPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ   N Y+ DL + +I  +E +TG  Y  +N   +  RVI DH R+   LI
Sbjct: 235 GVERVACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+ + +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL  G  L +   + +       + G  AF L+DT+G P+D+  ++
Sbjct: 355 ILRVAITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  F   + EQRSRA+A S     G  +   +        T F G++ L 
Sbjct: 415 AAEAGLE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELE 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+
Sbjct: 474 S-----------------------QSRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     + I DVQK  + ++VH A+V  G L     +V  +D Q R    
Sbjct: 511 GGQLGDRGRILMGDTVVDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I+   N+ + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +
Sbjct: 631 TDWAVNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESSI +G+RRIEA +G  + ++L  +    +SL+S LK    ++  R+ ++ 
Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLL 746

Query: 765 EEYRKLQLIHA---KRKLQLNVEDLS--CHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           ++ +  +   A   +R+L    E+      +I  +  +   +   +D+ +L+++   L+ 
Sbjct: 747 DKLKAAEKEIATLHRRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRD 806

Query: 819 KI--QSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           K+    G++++   S++  K   +   T+  + R  ++ +L +L    +  G GGG+P M
Sbjct: 807 KLSNGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDM 865

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           AQ  G + +  D A   V + L+
Sbjct: 866 AQGSGSDIDGLDAAFNAVRAELE 888


>gi|194468332|ref|ZP_03074318.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23]
 gi|194453185|gb|EDX42083.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23]
          Length = 884

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/921 (35%), Positives = 509/921 (55%), Gaps = 69/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G    + +  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++   +++   ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IESEEDRFSATLNGGLNLLNNVIAEAKENKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY  L    
Sbjct: 418 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVDN 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                                 + V  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 474 ----------------------AKVIGLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 511

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ DTG  I +  +   ++ DVQ       +H   +    ++      L +D     ++ 
Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTT-PIKKGARYKLVVDRIRHLKIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ VN+ I 
Sbjct: 571 KNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIW 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T E
Sbjct: 631 KEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   V  +VE +
Sbjct: 686 LGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETL 745

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E ++ Q  +   + ++  +       +     + + ++  +      +L+ + D  + 
Sbjct: 746 QNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADTWRS 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP++AQ+
Sbjct: 806 KALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQA 863

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N     +A++    +L K
Sbjct: 864 GGKNPAGIKEALSQAKDYLDK 884


>gi|298491784|ref|YP_003721961.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233702|gb|ADI64838.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 880

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/907 (36%), Positives = 519/907 (57%), Gaps = 49/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ + GHELLPS+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNDIRALFLDFYTQRGHELLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPDFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWELSTQVFRLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G++  +I R+  ++NFW    TGPCGPCSEI +D    
Sbjct: 124 ERLVVSVFEEDDEAFGIWRDKIGVNEKRIKRMGADENFWVSGPTGPCGPCSEIHYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +   +    L   +IDTGMGLERMA +LQ K N
Sbjct: 184 L-GEDNIDLEDDSRFIEFYNLVFMQYNRDASENLTPLQNKNIDTGMGLERMAQILQNKPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + +V  + Y   + +  V+ +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAKVAKIDYHHSDEDTKVSLKVIGDHIRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G  E  +  +     +   S YP L Q +  I+  L+ E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGICEEFINQVAERAISLSESVYPNLRQREASIKAELQREEANFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  ++  + +  +  ++G  AF LYDT+G PL++ Q++     L  +D+  
Sbjct: 363 KTLDRGEKLLAEIIQEVKQKGLTSMSGKSAFTLYDTYGFPLELTQEVAEENNLT-VDVDG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +++Q  RA+A    +   T +     L E    T+FIGY                 
Sbjct: 422 FNAEMQKQVERAKAAHETIDL-TVQGSLDKLVEHIHTTEFIGY----------------- 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+ ++  G   E A +G++V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 464 ------TAAATTAKVEVLLVGGISEETAEAGREVQIVLDRTPFYAESGGQIGDKGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ +++ +V+K+++  FVH   +E G LR   ++   I+   RR+   NH+ATHLL  AL
Sbjct: 518 GVLVRVEEVKKESD-FFVHFGHIESGTLRIGDNVKAQINTAYRRRSQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   +SQ GS ++ D LRFD    + +TS E++ IE+ VN  I++       ++   
Sbjct: 577 KKVVDEGISQAGSLVSFDRLRFDFNCPRALTSEEVQQIEELVNTWISEAHSAKIEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY + VRV+          S  LCGGTHV++TGEI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGNEVRVIEFPG-----VSMELCGGTHVNNTGEIGVFKIISEAGVS 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA++G     +L  +D+ +  L+  LKV    +  R+  +  E R  +      
Sbjct: 692 SGIRRIEAVSGAAILDYLNVRDKVVNDLSDRLKVKPEEIPDRIRTLQTELRNSEKEIQTL 751

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +        +   +A+   +   + +VD++ LK+  + L + I +G ++L  I +
Sbjct: 752 KSQLAIVKSDSLLKTAKTVAEHRIIVAQMEDVDAESLKAAAERLLQTIGNGAVVLASIPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       A++  GG GGG+P++AQ+GG + +K  QA+  
Sbjct: 812 AGKVSIVAAFSSEVNKKGVEAGKFVGAIARICSGG-GGGKPNLAQAGGRDASKLPQALET 870

Query: 892 VASFLKK 898
             + L++
Sbjct: 871 AKTELEE 877


>gi|21220002|ref|NP_625781.1| alanyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|256788900|ref|ZP_05527331.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289772786|ref|ZP_06532164.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|22096206|sp|Q9KXP9|SYA_STRCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|8249960|emb|CAB93381.1| alanine tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702985|gb|EFD70414.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 890

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/921 (37%), Positives = 503/921 (54%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSAQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W  + G+ +++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYQDDDEAERIWHDVVGVPSERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+         +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEEFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG+ Y       V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYEIDTSMAVINKATELTGVAYGDAQASDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+  F KTL  G  +LD  +S        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEENAFLKTLKAGTNILDTAVSDTKASGGTVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT-EKIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G      +  + +K GAT F+GY     
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADKAGATDFVGYTDTES 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGILVDGASSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D G  +++ D QK   G++VH  +V+ G +        +ID + R+ ++
Sbjct: 511 GQIGDTGRIRVDTGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDDRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A S L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAGGLADSAKDVRGVALVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSGIIMLVG--ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   +V    +   K   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRAAVVALFTTVNGKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N      A+  V   +
Sbjct: 865 QGGGQNAAAIGDAVDAVERLV 885


>gi|77410746|ref|ZP_00787105.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|77163282|gb|EAO74234.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 872

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/915 (34%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +       + + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFDYGADSLESNLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I  +L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNDL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  + + K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  L
Sbjct: 858 ASKIAELLAAVAENL 872


>gi|320120352|gb|EFE28354.2| alanine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 881

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/916 (35%), Positives = 512/916 (55%), Gaps = 64/916 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +V+ IR ++L+FF    H + PS  L+P ND +L+  N+GM P KN F G EKP    
Sbjct: 5   FKSVNEIRKSYLDFFASKDHYVSPSFPLVPINDNSLLLINAGMAPLKNYFMGIEKPPKNR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           ++T QKC+R G    D++NVG T RH TFFEMLGNFSFG YFK  AI  AW+ +T   ++
Sbjct: 65  MSTCQKCIRTG----DIENVGITARHATFFEMLGNFSFGNYFKNEAIAWAWEFVTTVLEI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179
               L++TVY+ED+EA+ +W+   G+S D+I+R+   DNFW +   TGPCGPCSEI+ D+
Sbjct: 121 SPELLWVTVYEEDDEAYNIWRDKIGVSEDRIVRLGKEDNFWEIGTGTGPCGPCSEIYIDR 180

Query: 180 GECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G              + +R++E WNLVF QF ++  +    LP  +IDTGMGLER+A +L
Sbjct: 181 GAEFGCDDEHCKPGCDCDRFLEFWNLVFTQFNKEEDKTLTPLPHPNIDTGMGLERVACML 240

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   + +DID  + +I+  E++  +KY  +    ++ R+I DH+R+ +FLI DG++P+NE
Sbjct: 241 QGVDSIFDIDTMQDIIRKIEELLHVKYREDSKKDISIRIITDHIRAVTFLIGDGVIPSNE 300

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + +LLG   P +  L+  +      AYPEL + +  I + ++ E+
Sbjct: 301 GRGYVLRRLLRRAARHGKLLGMDRPFLHELMSKVIEINADAYPELKEKQEYIYKVIKVEE 360

Query: 356 ERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++F +T+ +GL +L   ++ +    + +++ + AF+LYDT G P D+ ++IL   G + +
Sbjct: 361 DKFEETIYQGLEILREEMNRMKDTNETMMSPEKAFRLYDTFGFPFDLTKEILTEEGFS-V 419

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           +   F + +E+QR+RAR+      +   +K   SL      T F GY             
Sbjct: 420 EEEGFYEEMEKQRNRARSARKDSDNEGWKKENISL--DLEPTVFEGYTSF---------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + + +IVQ+  +++ A  G K   + ++TPFYAE+GGQ+GD G 
Sbjct: 468 -------------TEEASIISIVQEDALIQTAKKGDKAIFILNRTPFYAESGGQVGDIGI 514

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                 ++ +   +K    + +H   V  G +    S++  I+   R +   NHSATHLL
Sbjct: 515 LESQRGKVSVIQTKKGNNDVIMHIGEVIEGEISVGDSMIAEINESRRNETMRNHSATHLL 574

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL T+LG+HV+Q GS +TP+ +RFD TH + +T  EL+ +E  VN  I   L V  + 
Sbjct: 575 HKALRTVLGNHVTQAGSFVTPERVRFDFTHFEAMTKEELQKVELAVNGAIYSYLEVTCQE 634

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M  E A   GA AL G KY   VRVVS+     G +S  LCGGTHVS+T EI +  IVSE
Sbjct: 635 MAIEKAKEKGAMALFGEKYGQTVRVVSM-----GDYSVELCGGTHVSNTSEIGMFKIVSE 689

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + +G+RRIEA+TG +    L  Q+  L+ L+  +K  Q  +  RVE    E ++ +  
Sbjct: 690 SGVASGVRRIEAVTGMKVYEVLKKQEGLLEDLSEKMKTKQDQLSERVEHQIVELKEAKKE 749

Query: 774 HAKRK---LQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A+ K   LQ N++++  H   ++D+  +++    VDS +L+++  +L  K  + +++L 
Sbjct: 750 IAQLKNTILQENMDNIMSHCIDVSDLKLLTNEFENVDSDDLRNIAQSLVDKDDTLVVVLA 809

Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLS-------AKVLGGGGGGGRPHMAQSGGP 880
              K++K + + +  ++ +++  +  +L R                      +MAQ+GG 
Sbjct: 810 S-KKDEKINFIAMAGKNAVEKGAHCGNLLREVAKIAKGGGGGKA--------NMAQAGGK 860

Query: 881 NGNKADQAIAGVASFL 896
           + +K   A+      L
Sbjct: 861 DVSKIKDALNVAKDVL 876


>gi|330813881|ref|YP_004358120.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486976|gb|AEA81381.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 900

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/919 (43%), Positives = 556/919 (60%), Gaps = 49/919 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R TF +FF+ N H+++ SS L+P NDPTLMF NSGMV FKN+FTG E+  Y+  
Sbjct: 4   KTLQDVRKTFKDFFKANDHQIVDSSPLVPQNDPTLMFANSGMVQFKNVFTGLEQRDYKRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW L+TKE+ L 
Sbjct: 64  TTAQKCVRAGGKHNDLENVGFTPRHHTFFEMLGNFSFGDYFKEEAINYAWQLITKEYSLP 123

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +LY+TV+ ED+EA+ LW KI+G + D+II+I T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 124 KDKLYVTVFSEDQEAYDLWHKITGFNEDRIIKIPTSDNFWSMGDTGPCGPCSEIFYDHGD 183

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GGLPG+  E+G+R+IEIWNLVFMQ+EQ +K +R  LPK S+DTGMGLERM  VLQ  
Sbjct: 184 HLFGGLPGTKDEDGDRFIEIWNLVFMQYEQVSKDKRINLPKPSVDTGMGLERMTAVLQGT 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY IDLFK +I  +E +   K    N  ++RVI DHLR+S+FLI+DG+LP+NEGRGYV
Sbjct: 244 HDNYQIDLFKKIILDTESLFEQKLSEKNTASYRVIADHLRASAFLISDGVLPSNEGRGYV 303

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRRIMRRAM ++ +LG T+P++  +LP +   M   YP+L  AK LI+ET+ +E+ERF  
Sbjct: 304 LRRIMRRAMRHSNVLGKTDPILYKVLPTIIELMKEEYPQLENAKDLIKETVVTEEERFSS 363

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            L  GL +L+  +  + KDE L G VAFKLYDT+G P+D+ QD+L  + +  ID   F +
Sbjct: 364 LLKNGLKILNDEVKKI-KDETLPGSVAFKLYDTYGFPVDLTQDVLKEKNIK-IDHDEFKK 421

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSL-----KEKYGATQFIGYDLLRGSKFMKEDRKV 475
             E+ +  ARA   G GS   +KIWF +     KEK   T+F GY               
Sbjct: 422 LREQSKVEARASWKGTGSVGIDKIWFEIVSGQNKEKLADTEFFGYGS------------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                     + + S + +IV++ +   E   G    ++F+QT FYAE+GGQ+ DTG   
Sbjct: 469 ----------DQIESKLLSIVKEKKASLEIREGDSASLIFNQTVFYAESGGQISDTGTIE 518

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            + +  +++D QK     +VH  +V++G L+   + +L ID + R ++  NHSATHLLH 
Sbjct: 519 SNEVLFEVSDTQKIFGTFYVHSGVVKKGTLKLGDNFILKIDKKRRDKIKCNHSATHLLHA 578

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG HVSQ GS + PD LRFD +HSKPI+  E+  +  NVN ++     V T +M 
Sbjct: 579 ALREKLGKHVSQKGSYVGPDRLRFDFSHSKPISKQEIVELNKNVNAVVINGGEVKTTLMT 638

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + AI  GA AL G KY D VRVV++   +    S  LCGGTHV+    I    I++ESS
Sbjct: 639 PKKAIEQGAMALFGEKYGDEVRVVTMGNFNNKTFSIELCGGTHVTELSTIDNFEIINESS 698

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQL 772
           I +G+RRIEA+ G    +H    ++  K   + L      +   ++++    E+++    
Sbjct: 699 IASGVRRIEALRGDELSTHKQSLNKLAKEKETSLNSQIKGLESNIKKLNGNLEDFKDFSP 758

Query: 773 IHAKRKLQLNVEDLSCHKI--------------ADVNFMSHIISEVDSKELKSVMDALQK 818
                KL+   E L    I               D+      I  +  K+L++++D  +K
Sbjct: 759 EVKLVKLKSLYESLYKKNILQDSKKNIIKDYPLKDLTVRIQYIYGLSGKDLRTIVDDNKK 818

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +I S  +       + K ++ + +T++L +  +A   A+  +K L G GGGGR   AQ+G
Sbjct: 819 EIGSSAVFTFS-ELDNKLNIAVGITDELTNNLDASFFAKEISKFLKGKGGGGRKDFAQAG 877

Query: 879 GPNGNKADQAIAGVASFLK 897
           G   +        V   ++
Sbjct: 878 GEPPSNLKTVYDFVLKLVE 896


>gi|126695385|ref|YP_001090271.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|205830177|sp|A3PA95|SYA_PROM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126542428|gb|ABO16670.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 886

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/908 (35%), Positives = 501/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSV 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W    G+  D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSVFHEDEESAKIWIDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K N
Sbjct: 186 K-GLQNIDLEDGDRFIEFYNLVFMQYNRDQNGKLTDLKFKNIDTGMGLERMAQILQKKQN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ   ++  + Y   +  N ++ ++I DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T   + H+       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++  +I     ++ +D+  F 
Sbjct: 365 ETLERGEKLLDELIS--SGQKLISGFKAFELYDTYGFPLELTVEIAEENSIS-VDVKGFE 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +   T E       + +  T F GY+ L                
Sbjct: 422 EEMNAQKERAKAASSNIDL-TLEGSLEREIDLFNKTVFNGYNSL---------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I     +V++A  GQKV +V DQT FY E+GGQ+GD G      +
Sbjct: 465 -------LSEAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKDV 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + +V +K   +F+HH  +++GIL     +   +   NR + + NH+ATHLL  AL  
Sbjct: 518 EVLVDNVMRKKN-VFLHHGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALKL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   V Q GS +  + LRFD   S PI+  ++  IE  VN  I +N  +  + M++ +A
Sbjct: 577 IVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV+V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGAVAMFGEKYDDEVRVVNVPG-----VSMELCGGTHVKTTSELGSFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQSELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG---IS 831
           ++          S   +   + + + I  +D   L+S    L   + +  I+++G     
Sbjct: 752 EIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVILGGIPNP 811

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + +K   ++ + +D +    +A  L    A++  GG GGG+P+ AQ+G  + +K   AI 
Sbjct: 812 ENRKLLFVVSLGDDAVKIGLHAGKLINEIARICSGG-GGGKPNFAQAGAKDIDKLSDAID 870

Query: 891 GVASFLKK 898
              ++L+K
Sbjct: 871 YAKNYLQK 878


>gi|77408860|ref|ZP_00785587.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77172546|gb|EAO75688.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 872

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 491/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++  VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFXVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDATAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  + + K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  L
Sbjct: 858 ASKIAELLAAVAENL 872


>gi|306827097|ref|ZP_07460394.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|304430731|gb|EFM33743.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 872

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/913 (35%), Positives = 489/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSLDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R  Q  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|239932415|ref|ZP_04689368.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291440781|ref|ZP_06580171.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343676|gb|EFE70632.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 889

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/920 (37%), Positives = 503/920 (54%), Gaps = 61/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSAQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA ++W ++ G+  ++I R+   DNFW M   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYQDDDEAEQIWHEVVGVPKERIQRLGKKDNFWDMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMGLE 231
           +D+G    G   G +   ERY+EIWNLVFMQ+E+             LP  +IDTG+GLE
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGPGKDYPILGDLPSKNIDTGLGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A +LQ   N Y+ID    +I  + ++TG++Y       V+ RV+ DH+R+S  LI DG
Sbjct: 235 RLAMILQGVQNMYEIDTSMAVIDKATELTGVRYGDAQASDVSLRVVTDHMRTSVMLIGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  IE+
Sbjct: 295 VTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELITDRERIEK 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +E+  F KTL  G  +LD  +S        +L GD AF L+DT G P+D+  ++   
Sbjct: 355 VALAEENAFLKTLKAGTNILDTAVSDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466
           +GL+ +D   F + ++EQR RA+A +    +G  +   +  + ++ GAT FIGY    G 
Sbjct: 415 QGLS-VDEEGFRRLMKEQRERAKADARAKKTGHADLGAYREIADRAGATDFIGYTHTEG- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  I+  G     A  G +VE+V D+TPFYAE GG
Sbjct: 473 ----------------------ESTVVGILVDGVPSAAATEGDEVEIVLDRTPFYAEGGG 510

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GDTG    D G  +++ D QK   G++VH  +V+ G +  +     +ID + R  ++ 
Sbjct: 511 QIGDTGRIRTDSGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVDAKAHASIDARRRTAIAR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATHL H AL   LG   +Q GS   P   RFD      +    +  +E  +N+++A+
Sbjct: 571 AHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPQTVMLDVEQKINEVLAR 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T ++
Sbjct: 631 DLDVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   LK     +  +V  +  
Sbjct: 686 GLVKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVNQLTELLKGRSEELPEKVSAMLG 745

Query: 766 EYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKK 819
             +  +    K + +  L           DV  ++ +  +V     + +L+ ++  ++ +
Sbjct: 746 RLKDAEKEIEKFRAEKVLQAAAGLAESAKDVRGVAVVTGQVPDGTTADDLRKLVLDVRGR 805

Query: 820 IQSGIIMLVG--ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           IQ G   +V    +   K   +I   E   +R   A DL R +AK LGGGGG G+P +AQ
Sbjct: 806 IQGGRAAVVALFTTVNGKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVAQ 864

Query: 877 SGGPNGNKADQAIAGVASFL 896
            GG N     +A+  V   +
Sbjct: 865 GGGQNPAAIGEAVDAVERLV 884


>gi|169343614|ref|ZP_02864613.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169298174|gb|EDS80264.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 879

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/909 (36%), Positives = 517/909 (56%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L FF+   H  L S  L+P ND +L+  N+GM P K  FTG E+P  + 
Sbjct: 3   FMGANELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y  D+EA+ +W   + +   +I R+  +DNFW +   GPCGPC+EI FD+G
Sbjct: 119 PKDKLYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIGV-GPCGPCTEIHFDRG 177

Query: 181 ECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E           + + +R +E WNLVF QF++  +     L + +IDTGMGLER+AT++Q
Sbjct: 178 EGKVETVEEFLEASDADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++  + ++T  KY  + +  V+ R+I DH +S +FLI DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ A+    G AYPEL +    I++ ++ E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +S +    +++L+G  AFKLYDT+G PL++ Q+IL  + L  +D
Sbjct: 358 RFNETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKCLE-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           I +FN+ ++EQR RAR          +E+   +  +    T+F GY  L           
Sbjct: 417 IENFNKEMKEQRERARNARGESSYMGSEESPVNKVDASIVTEFDGYVNLE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +S V  +    E   E   G++  ++ D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------FNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDRGNI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     +TD +K   G FVH+  V  G L+    + L++D   R  +  NH+ATH+LH
Sbjct: 514 TSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV+Q+GS +  + LRFD TH   +T  EL+ +E  VN+ I     V T+ M
Sbjct: 574 EALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDTKEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  L   KY ++VRVVSV     G  S  LCGGTHV+++GEI L  IVSES
Sbjct: 634 SLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIVSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772
            + AGIRRIEA+TG  A   +  ++  LK  AS LK ++ ++  R+     E ++   ++
Sbjct: 689 GVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKDKEI 748

Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL    ED       +I  V  ++  + +VD   L+ + D ++ K+ +GI++L  
Sbjct: 749 AELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVVLAS 808

Query: 830 ISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +++ + T++ L +  +   + +  A V+GGGGG GRP MAQ+GG N     +A
Sbjct: 809 -GNGGKVNLVAMATKNSLANGVHCGKVIKEVAAVVGGGGG-GRPDMAQAGGKNPENIAKA 866

Query: 889 IAGVASFLK 897
           +      ++
Sbjct: 867 LEKAKEVVE 875


>gi|291570537|dbj|BAI92809.1| alanyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 878

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/906 (37%), Positives = 503/906 (55%), Gaps = 51/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             + S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ       
Sbjct: 9   FLSGSEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNR 67

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L
Sbjct: 68  ATTSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGL 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL ++V+ ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D  
Sbjct: 124 PPERLIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFH 183

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ  
Sbjct: 184 PE-RGDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGR 297
            NNY+ DL   +I+ +  + G+ Y  ++    V+ +VI DHLR+   LIADG+  +N GR
Sbjct: 243 PNNYETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGR 302

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RR + + RL+G        +     +     YP   + + +I+  L+ E+ R
Sbjct: 303 GYILRRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESR 362

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL+RG  LL  +L    + E ++G  AF LYDT+G PL++ Q+I    GL  +D+  
Sbjct: 363 FLETLERGEKLLAELLE--KQPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +  QR R++A    +   T +     L E+   T F+GYD                
Sbjct: 420 FEAEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTAFLGYDFPDS------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G     
Sbjct: 467 -----------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTS 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DV+K ++ IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL
Sbjct: 516 DVIVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E
Sbjct: 575 KLIVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA A+ G KY   VRVV          S  LCGGTHV++T EI L  IVSE+ I 
Sbjct: 635 EAKNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIA 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           AGIRRIEA+ GQ    +L  +D  +K L+  LK     +  R   +  E +  + QL   
Sbjct: 690 AGIRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAV 749

Query: 776 KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L +   D    +  ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S 
Sbjct: 750 KAELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS- 808

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + K S++   +  ++   +  A       AK+ GGGGG GRP++AQ+GG + +K  +A++
Sbjct: 809 DGKVSLVAAFSPVVIKDKKLQAGKFIGAIAKLCGGGGG-GRPNLAQAGGRDPSKLPEALS 867

Query: 891 GVASFL 896
              S L
Sbjct: 868 TAKSQL 873


>gi|294102019|ref|YP_003553877.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616999|gb|ADE57153.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 881

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/908 (37%), Positives = 510/908 (56%), Gaps = 47/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR+ F++F++  G +  PS SLIP NDP+L+FT +GMVPFK  + G ++P +    
Sbjct: 5   TGKEIRSLFIDFWESKGSKHYPSFSLIP-NDPSLLFTIAGMVPFKPYYLGIQQPEFTRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI   W+ LT+   L+ 
Sbjct: 64  TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSWGDYFKKEAITWGWEFLTEVIGLEP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RLY T+Y +DEEA+ +W+   GL  +KI R   ++NFW M  TGPCGPCSEI +DQG  
Sbjct: 120 ERLYATIYKDDEEAYSVWRNEVGLPENKIYRFDKDENFWFMGNTGPCGPCSEIIYDQGPE 179

Query: 183 IPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P        +RY+EIWNLVF QF+ Q       LPK +IDTGMGLER+ +++Q  
Sbjct: 180 FSCGKPTCDVGCNCDRYLEIWNLVFTQFDLQEDGTLVPLPKKNIDTGMGLERLTSIVQRV 239

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +++ DLFK LI     +TG+ Y  +  + +  RVI DH+RS +F+IADGILPAN+GRG
Sbjct: 240 RTDFETDLFKPLIDHICAMTGVTYGSSPSHNLAVRVIADHIRSVAFMIADGILPANDGRG 299

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  Y +L+G   P ++ L P +   M   Y EL+  + +IE+ +  E++RF
Sbjct: 300 YVLRRLIRRAARYGKLIGLDRPFLLELFPDVLDLMADPYRELLDNRPMIEQIVSMEEKRF 359

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           G+TL +G  L++  +S L    +  L+G +AF+LYDT+G PL++  +I     +  +D  
Sbjct: 360 GRTLQQGTELIEQEISRLRLRHVDALSGTIAFELYDTYGFPLELTTEICAENDIK-VDEA 418

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+  +E+QR RARA S  L S     ++  +  + G T F GY L              
Sbjct: 419 GFHVEMEKQRERARASSKQLSSEMKGDVYSQIAAEKGQTSFEGYVLSELD---------- 468

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V A+++ G+ V+    G+  E V   +PFYAE GG++GD G    
Sbjct: 469 -------------TEVVALIKDGQPVDFLSEGESGEAVLKVSPFYAERGGEIGDQGLLSA 515

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+++ +TD   +   + VH   V  G+L   +++  ++D + R  +  NH+ATHLLH A
Sbjct: 516 AGVKVCVTDTTSETADLIVHRVTVLEGVLTEGLAVHASVDKEKRESIRRNHTATHLLHEA 575

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           LS +LGSHV Q GS +    LRFD TH + +T  ++ ++ED VN  I +N+P+ T   + 
Sbjct: 576 LSQVLGSHVRQAGSLVNEALLRFDFTHFESMTREQIAAVEDMVNRQILKNIPLETIESDL 635

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E A   GA AL   KY D VRVV ++       S+ LCGG HV +TG+I    I+ E  I
Sbjct: 636 EQAREMGAKALFDEKYGDIVRVVRIK-----DFSTELCGGLHVDATGDIGAFKIIKEEGI 690

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +G RRI A+TG  A          ++ L + L ++   +V  VE +  E + L     +
Sbjct: 691 GSGTRRITALTGLNAFRAFQNSFRVVEDLCNVLTLTTDELVSHVENMQAEIKGLGRKIDE 750

Query: 777 RK---LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K   L   +++    +I     +        V +  L+ + D ++ K ++ +I+L    
Sbjct: 751 LKLNNLAAAIDESVKKEILSNGTSIFQGSFKGVSADMLRELCDRIKVKNKNIVIVLASQI 810

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E+   ++ +  ++ +    +A  + +  A +LGGGGG G+P +AQ+GG    K D+A  
Sbjct: 811 SEENVLIVAMADDEAMKAGAHAGKIVKEVAVILGGGGG-GKPAIAQAGGKKPEKIDEAFH 869

Query: 891 GVASFLKK 898
            +   ++K
Sbjct: 870 ALRGIVEK 877


>gi|284050469|ref|ZP_06380679.1| alanyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 876

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/906 (37%), Positives = 503/906 (55%), Gaps = 51/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             + S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ       
Sbjct: 7   FLSGSEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNR 65

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L
Sbjct: 66  ATTSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL ++V+ ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D  
Sbjct: 122 PPERLIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFH 181

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ  
Sbjct: 182 PE-RGDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGR 297
            NNY+ DL   +I+ +  + G+ Y  ++    V+ +VI DHLR+   LIADG+  +N GR
Sbjct: 241 PNNYETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RR + + RL+G        +     +     YP   + + +I+  L+ E+ R
Sbjct: 301 GYILRRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESR 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL+RG  LL  +L    + E ++G  AF LYDT+G PL++ Q+I    GL  +D+  
Sbjct: 361 FLETLERGEKLLAELLE--KQPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEG 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +  QR R++A    +   T +     L E+   T F+GYD                
Sbjct: 418 FEAEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTAFLGYDFPDS------------ 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G     
Sbjct: 465 -----------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTS 513

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DV+K ++ IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL
Sbjct: 514 DVIVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAAL 572

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E
Sbjct: 573 KLIVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALE 632

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A   GA A+ G KY   VRVV          S  LCGGTHV++T EI L  IVSE+ I 
Sbjct: 633 EAKNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIA 687

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           AGIRRIEA+ GQ    +L  +D  +K L+  LK     +  R   +  E +  + QL   
Sbjct: 688 AGIRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAV 747

Query: 776 KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L +   D    +  ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S 
Sbjct: 748 KAELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS- 806

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + K S++   +  ++   +  A       AK+ GGGGG GRP++AQ+GG + +K  +A++
Sbjct: 807 DGKVSLVAAFSPVVIKDKKLQAGKFIGAIAKLCGGGGG-GRPNLAQAGGRDPSKLPEALS 865

Query: 891 GVASFL 896
              S L
Sbjct: 866 TAKSQL 871


>gi|325104121|ref|YP_004273775.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145]
 gi|324972969|gb|ADY51953.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145]
          Length = 880

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/926 (35%), Positives = 506/926 (54%), Gaps = 78/926 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH+++PS+ ++  NDPTLMFTN+GM  FK++F G+    Y  V
Sbjct: 3   MTAKEIRQAFLDFFASKGHQIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT    LD
Sbjct: 63  ADTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTDVLKLD 122

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++ DE        +A+  WK    +   +I++    DNFW M +TGPCGPCS
Sbjct: 123 KDRLYVTVFEGDEKEGLPMDQDAYDFWKAF--VPESRILKGNKKDNFWEMGDTGPCGPCS 180

Query: 174 EIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI F    D+      G    + +  + IEIWN VFM+F +        LP   +DTGMG
Sbjct: 181 EIHFDNRSDEERAKVDGATLVNADDPQVIEIWNNVFMEFNRLKDGSLKKLPAQHVDTGMG 240

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
            ER+  V+Q KT+NYD D+F  +I    +  G+ Y         +    V  RV+ DH+R
Sbjct: 241 FERLVRVIQGKTSNYDSDVFTPIIDFISKSAGIPYNAAATPDDKDWGQAVAMRVMADHIR 300

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F IADG LP+N   GYV+RRI+RRA+ YA   LG+ EP +  L+P L  +    + E
Sbjct: 301 AIAFAIADGQLPSNNKAGYVIRRILRRAVRYAYQYLGFKEPFLNKLVPLLAAQFKGVFDE 360

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           LI  +  +++ +  E+  F +TL+ G+   +  +    +D  ++G  AF+LYDT+G P+D
Sbjct: 361 LISQQDFVQKVILEEENSFLRTLENGINRFEKYIQD-NQDRQIDGAFAFELYDTYGFPID 419

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   +GL  +D+  F+  L++Q+ R+RA      +      W ++ E     +F+G
Sbjct: 420 LTELMAREKGLT-VDMAGFDTELQKQKERSRAA-----TAIDAGDWITVNED-DEVEFVG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD +  +  + + RKV  +                              ++ ++V D TP
Sbjct: 473 YDEVVATSRILKYRKVKAKGK----------------------------EQYQLVLDVTP 504

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ+GD+G    +   + I D +K+  G+ +H A V    L    + +  ++   
Sbjct: 505 FYAESGGQVGDSGVLENENESIIINDTKKE-NGLIIHFADVLPHNLN--ATFIAKVNVHT 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR    NHSATHLLH AL  +LG HV+Q GS +  D LRFD +H   +T  E+  IE  V
Sbjct: 562 RRLTENNHSATHLLHAALKAVLGDHVNQKGSLVNADVLRFDFSHFSKVTEQEIAKIEAIV 621

Query: 640 NDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  + +N+P+   R +  + A+ SG  AL G KY D VRV++ +      +S  LCGGTH
Sbjct: 622 NQKVRENIPLKEERNVPYQKALESGVTALFGEKYGDYVRVITFD----DSYSKELCGGTH 677

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    IVSES++ AG+RRIEAIT  +A  ++  Q + L  L   LK +  ++  
Sbjct: 678 VKATGQIGYFKIVSESAVAAGVRRIEAITADKAEEYINNQAQLLAVLKELLK-NPKDLTK 736

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813
            VE + EE  KL+    K  L+    ++D+   K+  VN ++ I  E+D   ++ +K++ 
Sbjct: 737 SVESLLEENNKLKKEIEKSVLEKASVLKDVLKSKVTVVNDVNLIAEEIDLSNAEAIKNLA 796

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871
             L+  I   + +++G + + K ++ ++++++L+     +A  + R  AK + GG GGG+
Sbjct: 797 YQLKD-IVDNLFLVLGANIDGKPNLTVMISDNLVKEKGLDAGKIIRELAKEINGG-GGGQ 854

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897
           P  A +GG N      A+     +LK
Sbjct: 855 PFYATAGGKNPEGLKSALEKAIIYLK 880


>gi|319744847|gb|EFV97185.1| alanine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 872

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 489/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y  +   ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGENMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKSEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTESVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVSVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  + + K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENVELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  L
Sbjct: 858 ASKIAELLAAVAENL 872


>gi|227544204|ref|ZP_03974253.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300908199|ref|ZP_07125665.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112]
 gi|227185840|gb|EEI65911.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A]
 gi|300894626|gb|EFK87982.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112]
          Length = 895

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/921 (35%), Positives = 509/921 (55%), Gaps = 69/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 19  NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT  + F  
Sbjct: 79  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 135 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 190

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 191 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G    + +  ++I DH+R+ +F I DG 
Sbjct: 249 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 308

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 309 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 368

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++   + +   ++G  AFKLYDT+G P+++ ++     
Sbjct: 369 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 428

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY  L    
Sbjct: 429 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVDN 484

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                                 + V  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 485 ----------------------AKVIGLAHDGQQADEARPGDKNIELIFDVTPFYAEMGG 522

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ DTG  I +  +   ++ DVQ       +H   +    ++      L +D     ++ 
Sbjct: 523 QVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELT-APIKKGARYKLVVDRIRHLKIE 581

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ VN+ I 
Sbjct: 582 KNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIW 641

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T E
Sbjct: 642 KEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNE 696

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   V  +VE +
Sbjct: 697 LGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETL 756

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E ++ Q  +   + ++  +       +     + + ++  +      +L+ + DA + 
Sbjct: 757 QNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADAWRS 816

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP++AQ+
Sbjct: 817 KALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQA 874

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N     +A++    +L K
Sbjct: 875 GGKNPAGIKEALSQAKGYLDK 895


>gi|77413130|ref|ZP_00789330.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77160831|gb|EAO71942.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515]
          Length = 872

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 492/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWXIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNXNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  + + K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  L
Sbjct: 858 ASKIAELLAAVAENL 872


>gi|33860604|ref|NP_892165.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|41018179|sp|Q7V3N0|SYA_PROMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33633546|emb|CAE18503.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 886

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/907 (35%), Positives = 505/907 (55%), Gaps = 52/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL F+ +  H+++PS+SLIP +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRKEFLNFYHEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+T  + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIEWAWELVTDIYGLSA 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ ED+++ K+WK+  G+   +II++   DNFWS  +TGPCGPCSE++FD    
Sbjct: 126 ENIIVSVFHEDDDSVKIWKEDIGIHPKRIIKLGEKDNFWSSGKTGPCGPCSELYFDFKPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ +    +   L   +IDTGMGLERMA +LQ+K N
Sbjct: 186 K-GVQNIDLEDGDRFIEFYNLVFMQYNRDPDGQLTDLKYKNIDTGMGLERMAQILQKKKN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ + +++ + Y  +     ++ ++I DH+R+   LI+DG++ +N GRGY
Sbjct: 245 NYETDLIFPIIQKASEISKIDYYSSGERTKISLKIIGDHIRAVIHLISDGVIASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG     +  L       M   YP+L      I   ++ E+ RF 
Sbjct: 305 ILRRLIRRMVRHGRLLGLKNEFLSKLASVGIKLMQENYPDLKNNCDHILSEIKIEEIRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     +++ G  AF+LYDT+G PL++ ++I     + G+D+  F+
Sbjct: 365 ETLERGEKLLDELIS--SGQKMITGFKAFELYDTYGFPLELTEEIAQENNI-GVDVKGFD 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +  Q+ RA+A S  +   T E       + +  T F GYD L                
Sbjct: 422 KEMSAQKERAKAASQIIDL-TLEGSLEREIDLFDKTLFNGYDSLDSD------------- 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + +K I  +  +V++A  GQKV +V DQT FY E+GGQ+GD G  + + +
Sbjct: 468 ----------AEIKGIFLESTLVKQASEGQKVLIVLDQTSFYGESGGQVGDIGTILSNDL 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + +V +K   +F+H+ IV++GIL     +   ++   R + + NH+ATHLL  AL  
Sbjct: 518 EVVVDNVIRKKN-VFLHYGIVKKGILSLGQKVKTKVNDLARAKAAANHTATHLLQSALKV 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   V Q GS +  + LRFD   SKPIT  ++  +E  VN  I +N  +  + M + +A
Sbjct: 577 VVNESVGQKGSLVAFNKLRFDFNSSKPITKDQIFKVETLVNSWILENHSLNIKNMAKSEA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY+D VRVV V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LERGAVAMFGEKYDDEVRVVDVPS-----VSMELCGGTHVKTTSELGCFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L   LK +   ++ RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSAFEYFSDKNSLVSQLCDLLKANPNQLLDRVNSLQSELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++          S +K+   + +   +  +D   L+S    L  K+    ++++G   +K
Sbjct: 752 EIAYFKYSSLSSSANKVGLFSLIISQLDGLDGNSLQSAALDLTSKLGDKSVVILGGIPDK 811

Query: 835 ---KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K   ++   EDL+ R  +A  L    +++  GG GGG+P+ AQ+G  + +K + A+ 
Sbjct: 812 ENRKLLFVVSFGEDLVKRGMHAGKLINDISRICSGG-GGGKPNFAQAGAKDIDKLNDALE 870

Query: 891 GVASFLK 897
                L+
Sbjct: 871 YARKDLR 877


>gi|94994635|ref|YP_602733.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|205830226|sp|Q1J5Z4|SYA_STRPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94548143|gb|ABF38189.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 872

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/913 (35%), Positives = 489/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT    FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPDWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y  + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|152991270|ref|YP_001356992.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|205830162|sp|A6Q576|SYA_NITSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151423131|dbj|BAF70635.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 850

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/896 (38%), Positives = 510/896 (56%), Gaps = 52/896 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL +F    H + PS+ L+P  DPTL+FTN+GMVPFK IFTG+        T+ Q
Sbjct: 2   DIRKEFLNYFASKAHTIYPSAPLVP-EDPTLLFTNAGMVPFKKIFTGEMPAEVPRATSCQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+  +L   +L
Sbjct: 61  TCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPVEKL 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184
           ++TV++ D+EA K+W+K   +  D+I R    DNFW M +TGPCGPCSEIF+DQGE    
Sbjct: 121 WVTVHESDDEAEKIWQKF--VKKDRIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHFK 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G       +G+R++EIWNLVFMQ+E+    E   LPK SIDTGMGLER+  + +   +NY
Sbjct: 179 GPEDYLGGDGDRFLEIWNLVFMQYERNEAGELLPLPKPSIDTGMGLERITAIKEGVLSNY 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  LI A   ++  KY      + RVI DH+R+ +FL++ G++ +NEGRGYVLRRI
Sbjct: 239 DSSLFMPLIDAISDLSKKKYIYKEGASFRVIADHIRAVTFLLSQGVMFSNEGRGYVLRRI 298

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RR + +  LLG  EP M  L   +   MG  Y  L +    ++E +R+E+ERF +T++ 
Sbjct: 299 LRRGVRHGYLLGLKEPFMYRLADKVAEIMGGHYSYLYEKLSTVKEQIRAEEERFYQTIEA 358

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G+ L +  L+      I +GDVAFKLYDT+G PLD+ +D+L  +GL  +D   F   ++E
Sbjct: 359 GMRLFEEELAKTK--TIFSGDVAFKLYDTYGFPLDLTEDMLREKGLR-LDKERFETLMQE 415

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR RA+A   G G       +  L       +F+GY+ L+                    
Sbjct: 416 QRQRAKAAWKGSGDVALSGDFKELL--GLKNEFVGYEKLK-------------------- 453

Query: 485 TNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQ 542
                +I+  ++ +  +  E    GQK  ++ ++TPFYAE+GGQ+GD G   + +G ++ 
Sbjct: 454 ---AHTIITGLLDESFKKCESLKPGQKGWILLEETPFYAESGGQIGDRGEIRLYEGEKIA 510

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                KK   + +      +  ++ + ++   +D   R +++ +HSATH+LH AL  ILG
Sbjct: 511 KVLDTKKFFDLNMSLVEAIK-EVKKDEAVEAVVDKSRR-EIAKHHSATHILHSALRKILG 568

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            HV+Q GS +  + LRFD +H KP+ + E++ IE+ VN++IAQ +      M  + A   
Sbjct: 569 EHVTQQGSLVEANRLRFDFSHPKPLNAQEIERIENFVNEVIAQGIEAKVEEMPIDKAKEK 628

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRVV       G  S  LCGGTHV ++ EI   +I  ES + +G+RR
Sbjct: 629 GAMALFGEKYGDVVRVVEF-----GDVSVELCGGTHVKNSAEIGSFFITKESGVSSGVRR 683

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A        E L   +  +K    +++  ++++ +E + L+    K    ++
Sbjct: 684 IEAVCGMSAVKLAKSWRESLVKASEEVKNK--DILLGIKKLKDEIKDLKQEI-KNISSVS 740

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            ++L+  +I  V  +   I EVD+ ++K ++D L+   +   +ML     EK   ++   
Sbjct: 741 AKELASQEINGVRVV---IDEVDAGDIKKIIDDLKNAHEKLAVMLFQKRGEK--VLIAAG 795

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + +  +  A D  +  A V+GGGGG GRP  AQ+GG N  K  +A      + K+
Sbjct: 796 AKGV--KLKAGDWVKSVAPVVGGGGG-GRPDFAQAGGKNPEKIGEAKKAALEYAKE 848


>gi|184153174|ref|YP_001841515.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
 gi|183224518|dbj|BAG25035.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112]
          Length = 885

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/921 (35%), Positives = 509/921 (55%), Gaps = 69/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 9   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT  + F  
Sbjct: 69  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 124

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 125 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 180

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 181 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 238

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G    + +  ++I DH+R+ +F I DG 
Sbjct: 239 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 299 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++   + +   ++G  AFKLYDT+G P+++ ++     
Sbjct: 359 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 418

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY  L    
Sbjct: 419 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVDN 474

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                                 + V  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 475 ----------------------AKVIGLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 512

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ DTG  I +  +   ++ DVQ       +H   +    ++      L +D     ++ 
Sbjct: 513 QVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELT-APIKKGARYKLVVDRIRHLKIE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ VN+ I 
Sbjct: 572 KNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIW 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T E
Sbjct: 632 KEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNE 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   V  +VE +
Sbjct: 687 LGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETL 746

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E ++ Q  +   + ++  +       +     + + ++  +      +L+ + DA + 
Sbjct: 747 QNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADAWRS 806

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP++AQ+
Sbjct: 807 KALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQA 864

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N     +A++    +L K
Sbjct: 865 GGKNPAGIKEALSQAKGYLDK 885


>gi|209523613|ref|ZP_03272167.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496018|gb|EDZ96319.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 876

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/904 (37%), Positives = 504/904 (55%), Gaps = 51/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL F+ +  H+++PS+SL+P  DPT++ T +GM+ FK IF GQ        T
Sbjct: 9   SGSEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLIVSVFEEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ   N
Sbjct: 184 K-GDDNIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  + G+ Y  ++    V+ +VI DHLR+   LIADG+  +N GRGY
Sbjct: 243 NYETDLIFPIIKTAADLAGIDYAKSDDKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G T      +           YP   + + +I+  L+ E+ RF 
Sbjct: 303 ILRRLIRRVVRHGRLIGITGEFTTKVAETAIGLSEDVYPNTRERERVIKGELQREESRFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  +L+   + + ++G  AF LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 363 ETLERGEKLLAELLA--KQPDQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVDGFE 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +  QR R++A    +   T +     L E+   T F+GYD                  
Sbjct: 420 AEMSAQRKRSQAAHETIDL-TVQGSLDKLAEQIHPTTFLGYDFPDS-------------- 464

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V+A++  G+ V EAV+G +V++V DQTPFY E+GGQ+GD G      +
Sbjct: 465 ---------EATVEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ DV+K ++ IF+H   VERG L   +++   ID   RR+   NH+ATHLL  AL  
Sbjct: 516 IVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T+ EL+ +E+ VN  IA+  P     M  E+A
Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY   VRVV          S  LCGGTHV++T EI L  IVSE+ I AG
Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYPG-----VSMELCGGTHVTNTAEIGLFKIVSETGIAAG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           IRRIEA+ GQ    +L  +D  +K L   LK     +  R   +  E +  + QL   K 
Sbjct: 690 IRRIEAVAGQSVLDYLNVRDAVVKELGDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749

Query: 778 KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +   D    +  ++ D+  +   +  VD + LK+  + LQ+K+    ++L  +S + 
Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVS-DG 808

Query: 835 KASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           K S++   +  ++   +  A       AK+ GGGGG GRP++AQ+GG + +K  +A++  
Sbjct: 809 KVSLVAAFSPVVVKDKKLQAGKFIGAIAKLCGGGGG-GRPNLAQAGGRDPSKLPEALSTA 867

Query: 893 ASFL 896
            S L
Sbjct: 868 KSQL 871


>gi|288819149|ref|YP_003433497.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788549|dbj|BAI70296.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752733|gb|ADO46216.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 871

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/904 (38%), Positives = 526/904 (58%), Gaps = 49/904 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL FF+K GH  + S+ L+P +DPTL+F N+GMVPFKN+F G EK  Y  
Sbjct: 1   MFSTDEIRELFLSFFEKKGHVRVRSAPLVPESDPTLLFVNAGMVPFKNVFLGIEKRPYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + QKC+R  GKHNDL++VG T+RHHTFFEMLGNFSFG YFK++AI+ AW+ +T+   L
Sbjct: 61  AVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMLGNFSFGDYFKKQAIEYAWEFITQYLKL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LYITV++EDEE +++W+   GL   +I +    DNFW M +TGPCGP SEI FD+G
Sbjct: 121 PEDKLYITVFEEDEETYRIWRDDIGLEEGRIWKRGEEDNFWQMGDTGPCGPSSEIHFDKG 180

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E          EEGERY+E+WNLVFMQ+ +  K     LPK +IDTGMGLER+A+VLQ+ 
Sbjct: 181 E---------GEEGERYLEVWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERIASVLQKT 231

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             NY+ID+ + L+   E+++  +Y       V  RVI DHLR+ +F I+DG+LP+N GRG
Sbjct: 232 KTNYEIDIIRPLVAFGEELSQKRYGESFEVDVALRVIADHLRAITFAISDGVLPSNVGRG 291

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YV+RRI+RRA+ YA  LG  EP +   +  +   M  AYPEL  +   ++  ++ E+E+F
Sbjct: 292 YVIRRILRRALRYAYKLGVQEPFLYRGIDLVVDIMKRAYPELETSIGFVKSVVKGEEEKF 351

Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
             TL   + +++ ++    ++    ++G   F LYDT+G PLD+++DI   +GL  +D+ 
Sbjct: 352 INTLKNAMPVVEEIIHKTLEEGRSSISGAQVFTLYDTYGFPLDMLEDIAREKGLY-VDMK 410

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F + +E QR +AR H   + S   + I+  LKE    +QF+GYD               
Sbjct: 411 GFEEQMELQREKARKH-FKITSKEVKPIYAHLKELGKTSQFVGYD--------------- 454

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V AI++ G++V E   G++ E+V ++TPFYAE GGQ+GD G   G
Sbjct: 455 --------QYQAETKVIAIIKDGQMVSELKEGEEGELVLEKTPFYAERGGQVGDKGFIRG 506

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G    + D Q   EG+  H   + +G L+    +   ID + R  +  NH+ATHLLH  
Sbjct: 507 EGAYFMVEDTQSPVEGVITHIGKLIKGSLKVMDQVHAIIDRERREDIRRNHTATHLLHAV 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV Q GS ++   LRFD TH + +    L  IE+ VN+ I QN  V     + 
Sbjct: 567 LRHVLGDHVRQAGSLVSDQYLRFDFTHYEALDWDRLSRIEELVNEHIRQNYEVSVEETDY 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             AI  GA A+   KY+DRVRV++V     G  S  LCGGTHV  TG+I    IVSESS+
Sbjct: 627 TKAIKEGAIAIFEEKYSDRVRVITV-----GEVSKELCGGTHVRRTGDIGYFKIVSESSV 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            AG+RRI A TG+ A      +   L+ L+  L V Q ++   ++ +  + ++ +   A+
Sbjct: 682 GAGVRRIVAKTGRWAVEDAFREHRMLQELSISLGVKQEDIPDAIQRLERQLKEKEKEVAR 741

Query: 777 RK----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            K     Q+  + L    I  +        ++D+++L++  D ++   ++ ++  +   K
Sbjct: 742 LKELLLEQMVQKQLKEELINGIRLYWGFFEDIDTEDLRNTADRIRSSSENCVVFFI-TKK 800

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            ++ S L+ ++++L+ + +A ++ +   KVLGGGGG GR  +AQ GG N     +AI  +
Sbjct: 801 GERLSTLLALSKNLVPKLSAKEMIKEVGKVLGGGGG-GREDLAQGGGTNLQAVGKAIERL 859

Query: 893 ASFL 896
              +
Sbjct: 860 KDLI 863


>gi|324995376|gb|EGC27288.1| alanine--tRNA ligase [Streptococcus sanguinis SK678]
          Length = 872

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/916 (35%), Positives = 494/916 (53%), Gaps = 68/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + F 
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEDFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 -VMTVDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + AIV     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELTAELLAIVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+ DVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDAAGNLVAQVRDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A      ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLVLVAAIGDKVNVLAASKTKD----VHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFL 896
             +     +A VA  L
Sbjct: 857 KQSAIPALLAAVAEKL 872


>gi|148543768|ref|YP_001271138.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|227363252|ref|ZP_03847384.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|325682140|ref|ZP_08161658.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A]
 gi|148530802|gb|ABQ82801.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016]
 gi|227071708|gb|EEI09999.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3]
 gi|324978784|gb|EGC15733.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A]
          Length = 884

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/921 (35%), Positives = 509/921 (55%), Gaps = 69/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G    + +  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++RF  TL+ GL LL+ V++   + +   ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W S KE    ++++GY  L    
Sbjct: 418 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGYTDLTVDN 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                                 + V  +   G+  +EA  G K +E++FD TPFYAE GG
Sbjct: 474 ----------------------AKVIGLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 511

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ DTG  I +  +   ++ DVQ       +H   +    ++      L +D     ++ 
Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELT-APIKKGARYKLVVDRIRHLKIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK +E+ VN+ I 
Sbjct: 571 KNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQIW 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T E
Sbjct: 631 KEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSE  + AG+RRIEA+T   A   L  +D+ L   A+ LKV+Q   V  +VE +
Sbjct: 686 LGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETL 745

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E ++ Q  +   + ++  +       +     + + ++  +      +L+ + DA + 
Sbjct: 746 QNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLRQLADAWRS 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L   S + KA++L+ V++D       A DL +  A  + GG GGGRP++AQ+
Sbjct: 806 KALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGG-GGGRPNLAQA 863

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N     +A++    +L K
Sbjct: 864 GGKNPAGIKEALSQAKGYLDK 884


>gi|329121068|ref|ZP_08249699.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|327471230|gb|EGF16684.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 885

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/904 (34%), Positives = 496/904 (54%), Gaps = 53/904 (5%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    +TT
Sbjct: 20  NDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHRITT 79

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   +D+ 
Sbjct: 80  SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKMDKE 135

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T++ +D++A+  W K  G++ + I R+   DNFW + E GPCGP SEIFFDQGE  
Sbjct: 136 RLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQGESF 192

Query: 184 PGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +G+R++EIWNLVF QF++Q       L K +IDTG GLER+A V+Q+K N
Sbjct: 193 GTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLAKKNIDTGAGLERLAAVMQQKKN 252

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DLF  +I  + +++G  Y  + ++ V  +VI DH R+ + +I+DG+LP+NEGRGYV
Sbjct: 253 NFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGRGYV 312

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ + +L+G  +  M  ++  +   M   YPEL + +  I++    E+ERF  
Sbjct: 313 LRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEERFQS 372

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL+ G  LL  ++    K  I  L+G+  FKLYDT+G P ++  +I    G++ ID   F
Sbjct: 373 TLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDKEGF 431

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             ++ +Q+ RAR   + + +                            K +  D   L  
Sbjct: 432 IISMNKQKERARNARVKISA----------------------------KVLTPDTTKLDA 463

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           K        V + +  + + GE +  A  G+ + V+    PF+AE GGQ+GD G      
Sbjct: 464 KNLTVKDEDVDTTIVMLGKNGEEILSATDGEDLVVILKNNPFHAEGGGQMGDIGILRNSS 523

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ + +K  +GI      +  G +     + + +D   R  L+ NH+ THLLH AL 
Sbjct: 524 GVFEVHNTKKLPDGIVYLIGTITEGKISVNDIVEVKVDRVRRAALAKNHTGTHLLHAALR 583

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG   +Q GS + PD LRFD T ++P+T+ ++  +E  VN+ I ++L + T+ +  E+
Sbjct: 584 QVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILESLTLTTKEVPLEE 643

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  +GA AL G KY   VR+V +     G  S  LCGG+H  +TGE+    I+SES I +
Sbjct: 644 ARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESGIGS 698

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRI A+TG  A   ++   + +++ A  LK  +  ++ +++++  + +K +    K K
Sbjct: 699 GLRRIVALTGISAYKAMVSDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDILKLK 758

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +    +L            ++F +      +  EL+ + D ++ K+  G  +L  +S  
Sbjct: 759 NEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSVSNG 818

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K   V +   E +    +   +    AK+  GG GGG+P +AQ+GG + +K + AI    
Sbjct: 819 KVNFVGMASKEAVEAGIHMGKVVSQVAKICNGG-GGGKPTVAQAGGKDISKVEDAIKESE 877

Query: 894 SFLK 897
             ++
Sbjct: 878 KIIE 881


>gi|227891107|ref|ZP_04008912.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227866981|gb|EEJ74402.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 917

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/917 (36%), Positives = 516/917 (56%), Gaps = 62/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 42  SSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 101

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  + FD+
Sbjct: 102 SSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPEWFDM 157

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIFFD+G
Sbjct: 158 DKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYEA--EDNFWDIGE-GPSGPDSEIFFDRG 213

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +   P   P      E ERY+EIWN+VF +F  +       LP  +IDTGMGLER+ +
Sbjct: 214 QEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLERVVS 273

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292
           V Q    N++ DLF  +I+ + +++  K  G N    V+ +VI DH R+ +F I DG LP
Sbjct: 274 VFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGDGALP 333

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    IE+ ++
Sbjct: 334 SNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIEKVIK 393

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++     GL
Sbjct: 394 MEEDRFNDTLKEGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYANDEGL 453

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   FN+ +E+Q++RARA      S   +     L +    ++++GY  L+      
Sbjct: 454 -DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHELK------ 504

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             + ++K I+   E+V+   +  + +V+FD+TPFYAE GGQ+ D
Sbjct: 505 -----------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGGQVAD 547

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G        +  ++ DVQ    G  +H   V + + R E +  L +D     ++  NH+
Sbjct: 548 KGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHVLKEMTR-ENTYSLEVDVAFHNKVKKNHT 606

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN  I +N+ 
Sbjct: 607 ATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWENIQ 666

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T + ++E A   GA AL G KY D VRVV V     G +S   CGGTHV++T EI L 
Sbjct: 667 VETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEIGLF 721

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK V    V  ++E++ E+ 
Sbjct: 722 KIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQEQV 781

Query: 768 R--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQS 822
           +  + Q    + K            + ++N  + I  +V+     +L+ + D  ++K  S
Sbjct: 782 KLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQLRQLADQWKEKQLS 841

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L   + + K +++  ++ D +   + A DL +  A  +GGGGG GRP +AQ+GG  
Sbjct: 842 DVLVLATATADGKVNLITAISGDAVKEGYKAGDLIKAIAPKVGGGGG-GRPDLAQAGGKK 900

Query: 882 GNKADQAIAGVASFLKK 898
                +A+     +L K
Sbjct: 901 PEGIQEALKAAEDWLNK 917


>gi|328955592|ref|YP_004372925.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2]
 gi|328455916|gb|AEB07110.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2]
          Length = 885

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/911 (36%), Positives = 501/911 (54%), Gaps = 53/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + S IR +FL+FF++ G +++PSSSL+P  DP+L+  N+GM  FK  + G++       
Sbjct: 8   KSTSEIRASFLDFFERRGCKVVPSSSLLP-EDPSLLLANAGMNQFKQYYLGKKTMREIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R      D+D +G   RH +FFEMLGNFSFGG  KE+A   A++  T+   L 
Sbjct: 67  ASCQKCIRT----TDIDIIGSDGRHLSFFEMLGNFSFGGVTKEQACAWAYEFSTEVLKLA 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ T++DEDEEA ++W+ + G+S D I R+   DNFW+   TGPCGPCSEI++DQGE
Sbjct: 123 PHRLHFTIFDEDEEAHEIWRAL-GVSEDHISRLGAEDNFWAAGPTGPCGPCSEIYYDQGE 181

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +RY+E WNLVF ++++Q       LP  ++DTGMG+ER+A ++Q 
Sbjct: 182 AFGCGSPTCAPGCECDRYLEFWNLVFTRYDRQADGSMPELPHRNLDTGMGIERVAAIVQH 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGILPANE 295
            ++NY+ D+   LI    +++G  Y+      +  + R+I DH R+++F++ADGI P+NE
Sbjct: 242 ASSNYEGDVLSGLIALGVEISGRAYDPLSYQGDSRSLRIIADHSRAATFMLADGIRPSNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG     +     ++   MG  Y ELI+ + L+   L SE+
Sbjct: 302 GRGYVLRRLIRRAVMHGRLLGIEGAFLSRFARSVIETMGPHYSELIEHRDLVVSFLASEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  T+D G   L+  L+ L + + L+G VAF L+DT G P+D+  +I   RG++ ID 
Sbjct: 362 ERFFATIDNGSAFLEDALAGLARGDTLDGRVAFTLHDTFGFPIDLTIEIARDRGIS-IDE 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ A+ EQR RARA    +   + + +W  L +    T F+GYD              
Sbjct: 421 EGFDNAMTEQRERARAQVRDVAWSSFDSVWIGLADTISPTAFVGYDNYE----------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + + AI+ +   V+   + Q  E+V D+TPF+ E GGQ+GDTG  +
Sbjct: 470 ------------AEARIVAIILEDRSVDAVEADQVAEIVLDRTPFFGERGGQIGDTGTLL 517

Query: 536 G-DGIRLQITDVQKKAEGIFV-HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             DG    + +  +  E I   H   V    L    +++  ID   R ++  NH+ATHLL
Sbjct: 518 RPDGGTAFVVERTEWRERILCSHVGRVGAERLSVGDTVIAQIDVARRERIRRNHTATHLL 577

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG HV+Q GS +  + LRFD TH    T+ +L ++ED VND I ++LPV T +
Sbjct: 578 HAALRGVLGEHVAQEGSFVDDERLRFDFTHFSACTADQLAAVEDRVNDWIFEDLPVATDV 637

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E+A +SGA AL   KY+ RVRVVS      G  S  LCGGTH  +T ++ +  I+SE
Sbjct: 638 MDLEEAKSSGALALFSEKYSSRVRVVSC-----GTASRELCGGTHAHTTSQLGIFKILSE 692

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           SS+    RRIEA++   ARS    +   L   A  L+V   +V  RV  +    R+    
Sbjct: 693 SSVGTNTRRIEAVSSAGARSFFRRRLALLDETAEKLRVRPEDVPARVSALERSLRET-SD 751

Query: 774 HAKRKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
             +R L  +  D     I +         +   I  +D ++L+   D ++K+    +  +
Sbjct: 752 KLRRALVGDTSDAIDRAIGEAVDAGGYALVVARIDGLDPQDLRGAWDTIRKRSDGPVAAV 811

Query: 828 VGISKEKKASVLIVVT--EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +  +  K+  VLI     + +   F+   L +  A  + GG GGGRP MAQ+GG      
Sbjct: 812 LAGATSKRTPVLIAAGDEDAVHAGFDGAALIKRIAPKIAGG-GGGRPAMAQAGGKETGGI 870

Query: 886 DQAIAGVASFL 896
           D A++   + L
Sbjct: 871 DAALSMARTEL 881


>gi|56750673|ref|YP_171374.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|56685632|dbj|BAD78854.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 892

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/905 (38%), Positives = 512/905 (56%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 23  SGDQIRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 81

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 82  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 137

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 138 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 197

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 198 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 256

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +    V+ +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 257 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 316

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 317 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 376

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 377 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 433

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   ++F+GY                   
Sbjct: 434 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPSEFVGYG------------------ 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 475 -----DAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 529

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 530 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 588

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 589 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 648

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 649 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 703

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 704 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 763

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 764 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 823

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGGG GRP++AQ+GG + +K  +AIA  
Sbjct: 824 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGG-GRPNLAQAGGRDASKLPEAIAAA 882

Query: 893 ASFLK 897
              LK
Sbjct: 883 LDQLK 887


>gi|329938948|ref|ZP_08288322.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301833|gb|EGG45726.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 890

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/923 (37%), Positives = 513/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE A +LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAAKLAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY+ED+EA ++W+ I G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEAEKLWITVYEEDDEAERIWRDIVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+         +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEDFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG+ Y    ++ V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNLYEIDTSMAVIGKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVETVIATMGQQYPELVTDRERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+ RF KTL+ G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 KVALAEEARFLKTLNAGTNVLDTAVTETKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +L   +G  +   +  + +  GAT FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADALAKKTGHADLGAYREIADSAGATDFIGYTETEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGILVDGLSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D G  ++I D QK   G++VH  +V+ G +        +ID + R+ ++
Sbjct: 511 GQIGDTGRIRTDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGARAQASIDDRRRKAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M  ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A S L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVHQLTELVKGRPEELPEKVAGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQK 818
              +  +    K + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 ARLKDAEKEIEKFRAEKVLQAAGGLAASAKDVRGLALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ L  ++  +  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRAAVVALFAVNNGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +A+  V   + +
Sbjct: 865 QGGGQNPAAVGEAVDAVERLVAE 887


>gi|119513305|ref|ZP_01632344.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414]
 gi|119462040|gb|EAW43038.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414]
          Length = 880

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 515/906 (56%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL FF + GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ    +   T
Sbjct: 9   SGNEIRDIFLNFFAQRGHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTAEFNRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI   W+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKPQAIAWGWELSTQVFGLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L ++V+++D+EA+ +W+   G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 EKLVVSVFEDDDEAYNIWRDDIGVPEARIKRMGEDDNFWVSGHTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GDENIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAEIAGIDYHKSDETTQVSLKVIGDHVRSVVQMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG     +  +     +   SAYP + Q +  I+  L+ E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLLGINSEFITQVAETAISLSESAYPNVRQREAAIKAELQREEANFL 362

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLDRG  LL+ ++  + +     ++G+ AF LYDT G PL++ Q+I     L  +D   
Sbjct: 363 RTLDRGEKLLEEIIQEVKQQGKTSISGESAFTLYDTFGFPLELTQEIAAENQLT-VDEAG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +++Q  RA+A    +   T +     L E   AT+FIGY    G            
Sbjct: 422 FNTEMQKQVERAKAAHETIDL-TVQGSLDKLAEHIQATEFIGYTQPVG------------ 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+AI+  G   EEA +G ++++V +QTPFYAE+GGQ+GD G   GD
Sbjct: 469 -----------TANVEAILIDGIAQEEAEAGTEIQIVLNQTPFYAESGGQIGDKGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ +++ DV K+    F+H   +ERG +R   S+   ID   RR+   NH+ATHLL  AL
Sbjct: 518 GVLVRVEDV-KRESDFFIHFGRIERGTIRVGDSVTAQIDRTCRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++   +SQ GS ++ D LRFD    + +T+AE++ +E  VN  IA+       ++   
Sbjct: 577 KKLVDDSISQAGSLVSFDRLRFDFNCPRGLTAAEVEQVEAQVNTWIAEAHTANIEVLPIA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY + VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGEEVRVIDFPS-----VSMELCGGTHVSNTAEIGIFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  +   A  
Sbjct: 692 SGVRRIEAVSGPAILDYLNVRDKVVKDLSDRFKVKPEELPERITTLQTELRNSEKQLATL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + +   +   + +VD + LK+  + L +KI +G ++L  + +
Sbjct: 752 KSQLAIAKSDSLLQTVESVGEYQILVAQMEDVDPESLKTAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGGG GRP++AQ+GG + NK  +A+A 
Sbjct: 812 AGKVSIVAAFSAEVNKKGLQAGKFVGAVAKICGGGGG-GRPNLAQAGGRDANKLPEALAK 870

Query: 892 VASFLK 897
             S L+
Sbjct: 871 AHSDLQ 876


>gi|58584618|ref|YP_198191.1| alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|75497910|sp|Q5GSS5|SYA_WOLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58418934|gb|AAW70949.1| Alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 875

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/904 (41%), Positives = 542/904 (59%), Gaps = 72/904 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF +N H+ + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVRNNHKQVFSSPLIPEHDPTLMFTNAGMVQFKNIFTGIQKTDIKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+R GGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW  +T+E  LD
Sbjct: 61  VSSQKCLRVGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL IT+Y  D++++++W+K+SG S DKIIRI T+DNFWSM   GPCGPCSEIF+D  +
Sbjct: 121 KNRLSITIYHTDDKSYEIWRKVSGFSNDKIIRIATDDNFWSMGNIGPCGPCSEIFYDYAK 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                   + +  +R +EIWNLVFM+F +  +     LPK  IDTGMGLER+A V+Q   
Sbjct: 181 P-------NLQNDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERVAAVMQNVY 233

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYDIDLF  LI  S++  G      N   H++I DHLR+++FLIA+G+LP NEGR Y+L
Sbjct: 234 DNYDIDLFSALISKSQEYCG---NVENKAAHKIIADHLRAAAFLIAEGVLPGNEGRNYIL 290

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RR++RRA+ Y   LGY +PL+  + P L        MG  YPELI+AK LIE TL+SE+E
Sbjct: 291 RRLIRRAVRYIHQLGYNDPLLHRIFPVLIDSTSSAYMGGVYPELIRAKSLIETTLKSEEE 350

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL +G+ LL    + L   + L+G+ AFKLYDT+G PLDI  DIL  R +   D  
Sbjct: 351 NFKDTLIKGINLLKKFTTDLKPGDTLSGESAFKLYDTYGFPLDITLDILKERKI-NFDQK 409

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+EEQ+ RARA   G G  + E+IWF+L +K+G T+F+GY+               
Sbjct: 410 GFDNAMEEQKERARAKWTGSGEKSIEQIWFNLIDKFGKTEFVGYEFSEVKD--------- 460

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                       + ++  +  + E+++ A  G+K+ ++ D+TPFY E+GGQ+GDTG  I 
Sbjct: 461 ------------AKVLVILSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSFII 508

Query: 537 DGIR---------------------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
             I                      + I +   K   +++H  IV+ G +  +  +  + 
Sbjct: 509 PSITPVLDTKIQKKNDRSCDRITEGIAIVENTNKVNDLYLHRCIVKSGSICKDDIVTAST 568

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R+ L  NHSATHLLH AL  ILG HV+Q GS I PD LRFD +H+  +T  +L  I
Sbjct: 569 DKERRQNLRRNHSATHLLHFALRKILGDHVTQKGSLIAPDRLRFDFSHNTQVTRDQLSLI 628

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED VN +I +NL   T+I +   AI  GA AL G KY D+VRVV++        S  LCG
Sbjct: 629 EDMVNSLIRENLSAFTKIQSMNQAIGEGAMALFGKKYGDQVRVVNIG------DSKELCG 682

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV  TGEI L  I++E SI +G+RRIEA+TGQ A  +    +  L+ +A  +K     
Sbjct: 683 GTHVERTGEIGLFKIITECSIASGVRRIEALTGQEAIDYARDNEINLRKIAELVKAPVNE 742

Query: 756 VVGRVEEIWEEYRKLQ-LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           +  R+  + +E ++ +  I +  K  ++ E++   +I  +NF+SH  +++ +  ++    
Sbjct: 743 ITSRLSILNQERKESETKIKSLYKKLVSAENIKSIEINGMNFVSHSFTDIPANIVREF-- 800

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            LQ++    +I    + K  K  +++ V++DL+D+ +  +L       + GG  G    +
Sbjct: 801 TLQQQKPKTVIAFTAMEKN-KTVLIVKVSKDLVDKISTKELV----STVTGGVCGENAEL 855

Query: 875 AQSG 878
            Q+G
Sbjct: 856 TQTG 859


>gi|94990711|ref|YP_598811.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|205830225|sp|Q1JG77|SYA_STRPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94544219|gb|ABF34267.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 872

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/913 (35%), Positives = 490/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R  Q  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|76788418|ref|YP_329556.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|123601966|sp|Q3K1P7|SYA_STRA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76563475|gb|ABA46059.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909]
          Length = 872

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/915 (34%), Positives = 491/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++     
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAD 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +       + + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFDYGADSLESNLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I  +L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNDL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ  + + K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A VA  L
Sbjct: 858 ASKIAELLAAVAENL 872


>gi|282866222|ref|ZP_06275269.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282559006|gb|EFB64561.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 889

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/923 (36%), Positives = 506/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+ LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQFAWEALTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL+ITVY +D+EA ++W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   +          LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKDDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y   +   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAEHGSDVSLRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPEL+  +  +E
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGQVVKDLVDVVIDTMGQQYPELVTDRKRVE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  +S       ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVSETKATGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+F GY   +G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADNSGLTEFTGYTSTQG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G    D G  +Q+ DVQ+   G+ VH   V+ G +    S++  ID   RR ++
Sbjct: 511 GQLADQGRIRLDTGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGSSVLAAIDTTRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLVESAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++Q G   ++ +  +   +   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RVQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N +    A+A V   + +
Sbjct: 865 QGGGQNPDAIGDAVAAVERLVTE 887


>gi|116629092|ref|YP_814264.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238853835|ref|ZP_04644200.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282852129|ref|ZP_06261486.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311111122|ref|ZP_07712519.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22]
 gi|122273910|sp|Q045P6|SYA_LACGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116094674|gb|ABJ59826.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323]
 gi|238833530|gb|EEQ25802.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4]
 gi|282556693|gb|EFB62298.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1]
 gi|311066276|gb|EFQ46616.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22]
          Length = 882

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/918 (36%), Positives = 508/918 (55%), Gaps = 65/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F++ ++ Q+ RAR     L S  ++ +  +L      ++F           
Sbjct: 416 GLK-VDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ+
Sbjct: 462 ------------EYGTLEEKHAKLIDIVVNDKLVDKA-DGEHATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     L  ++TDVQ       +H   +    L      +L +D + RR L  N
Sbjct: 509 ADHGEILNQNGELVARVTDVQHAPNDQNLHFVDII-LPLEKGQEYILKVDQKRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I + 
Sbjct: 568 HTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNEKIWEE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I 
Sbjct: 628 IPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +V  ++  + E
Sbjct: 683 MLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKISSLEE 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + R  Q    + K Q+N        + +  V  ++ I ++ D     +L+ + D  +   
Sbjct: 743 DLRASQKEAEQLKAQINKAKAGDLFNDVKQVKGLTVIAAQADVEGMNDLRELADNWKSSD 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L      K   V+ +  + +     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 803 KSDVLVLAAEVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFLKK 898
           N      AIA V   +++
Sbjct: 862 NPAGLKDAIAKVLQEVEE 879


>gi|290961838|ref|YP_003493020.1| alanine tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651364|emb|CBG74486.1| alanine tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 890

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/923 (36%), Positives = 511/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGEVKPSFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQHAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA ++W +  G+  ++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYKDDDEAERIWHEQIGVPKERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKEDFEILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I  + ++TG++Y   +   V+ RV+ DH+R++  LI D
Sbjct: 235 ERLAMILQGVQNLYEIDTSMAVIDKATEITGVRYGDAHASDVSLRVVTDHIRTAVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLIDVVIGMMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  ++   +   ++L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKQAGGQVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+FIGY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADARAKKTGHADLGAYREIADAAGETEFIGYSDTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGILVDGLSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG    D G  ++I D QK   G++VH  +V+ G +        +ID + R  ++
Sbjct: 511 GQIGDTGRIRVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDGRRRTAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   I++ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVHAEILSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV+ ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAESAKDVSGVAVVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSGIIMLVG--ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   +V    +   K   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRAAVVALFTAVNGKPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +A+  V   + +
Sbjct: 865 QGGGQNPAAIGEAVDAVERLVAE 887


>gi|239978415|ref|ZP_04700939.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291450311|ref|ZP_06589701.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353260|gb|EFE80162.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 890

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/923 (36%), Positives = 504/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+  P     
Sbjct: 1   MESAEIRRRWLRFFEERGHAVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEATPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTSQEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY +D+EA  +W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   +++        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEDKENFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ+  N Y+ID  + +I  + ++TG++Y  +    V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQDVRNLYEIDTSRIVIDKATELTGVQYGADQASDVSLRVVTDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPELI  +  I 
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAVRNMRLLGATGPVVAELVDTVIESMGQQYPELITERKRIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  ++        +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGSTVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT F GY    G
Sbjct: 415 EQGLS-VDEPGFRRLMKEQRERAKADARAKKTGHADLSAYREVADAAGATDFTGYLATEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G     A  G +VE+V D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGLLVDGVSSPAATEGDEVEIVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ DTG    D G  +++ DVQK   G+ VH  +V+ G +         ID   RR ++
Sbjct: 511 GQIADTGRIRFDNGAVVEVRDVQKPVPGVHVHKGVVQVGEVTVGSPAYAAIDVGRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      +  A L  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPGAVLTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++L V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RDLDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  +V  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKVSAML 745

Query: 765 EEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + ++ +    + + +              DV   + +   V     + +L+ ++  ++ 
Sbjct: 746 GKLKEAEKEIERFRAEKVLQAAAGLAAGAQDVRGTALVTGRVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I +    ++ L  ++ ++  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIPADRPAVVALFTVANDRPLTVVATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N    D+A++ V   + +
Sbjct: 865 QGGGQNPQAIDEAVSAVERQVAE 887


>gi|312870442|ref|ZP_07730562.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311093999|gb|EFQ52323.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 886

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/919 (34%), Positives = 500/919 (54%), Gaps = 69/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+FFQ++GH+++PS SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   DSAQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT    F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPARLYITYYPKDHDAYNKWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEFNNLAEDDPESYPGG--ENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  +I+    +  G +Y  +  + V  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPIIKQVAALSAGKQYGADKADDVQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  L+P +   M   YPE++Q    I   
Sbjct: 298 LPSNMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE++RF  TL+ GL LL+ V++   ++    ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IKSEEDRFSATLNGGLNLLNSVIADAKQNCSNQIDGRTAFKLYDTYGFPIELTKEYAADE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W   KE    ++++GY  L    
Sbjct: 418 GLT-VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGYTDLTVDG 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEVVFDQTPFYAEAGG 526
                                 + V  +   G+  +  A S Q +EV+FD TPFYAE GG
Sbjct: 474 ----------------------AKVIGLAHDGQQADSAAPSDQNIEVIFDTTPFYAEMGG 511

Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ DTG  I + G ++ ++ DVQ       +H   +    ++      L +D     ++ 
Sbjct: 512 QVADTGDIIDNYGEKVGRVVDVQHAPNQQNLHRVELTS-PIKKGARYKLVVDRARHLKIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +L ++E  VN+ I 
Sbjct: 571 KNHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAMVNEQIF 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E
Sbjct: 631 KEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSE  + AG+RRIEA+T   A   L  ++  L+ +A  LK +Q   V  +V  +
Sbjct: 686 LGLFKIVSEGGVGAGVRRIEAVTSSDAYDFLQKRNAMLEEVAGDLKAAQIKEVPHQVANL 745

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE ++        + ++  +  +       +      ++  +      +L+ + D+ + 
Sbjct: 746 QEELKQANKQVEALQAKIAAQQANNVFDDVQETKKGKLIAAEVKVAGMGQLRQLADSWRA 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L G + + KA++L+ V++  +     A DL +  A  + GG GGGRP++AQ+
Sbjct: 806 KGLSDVLVL-GTANDGKANLLVAVSDGKVKAGLKAGDLIKAIASAIKGG-GGGRPNLAQA 863

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG +      A+     +L
Sbjct: 864 GGKDPAGIPAALKLAKEYL 882


>gi|187778850|ref|ZP_02995323.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC
           15579]
 gi|187772475|gb|EDU36277.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC
           15579]
          Length = 879

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/908 (37%), Positives = 521/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHFRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPSKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y+ED+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KEKLYVTIYEEDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             + +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDSIFEVDTIKAVLDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + K  I++ ++ E+ER
Sbjct: 299 GYVLRRVLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKKEYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL  +G+  ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEQGI-NIDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    TQF GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLSINTQFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       + S V  IV+  E   +   G K  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------LKSKVALIVENEEFKNQIEKGNKGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   V  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDSFKAKVIDCKKNISGKILHFVRVLEGKMSLEDEVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++ AELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEAELKEVEKIVNKEIMKANVVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHV ++GEI +  IVSE+ 
Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GEFSKELCGGTHVGNSGEIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEAIT  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAITAFKAIEYVDHKNNILKDAAQILKCNEKELLNKLSHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK ++AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEIAAIAGGGGG-GRPDMAQAGGKDPNKLEEAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|37521917|ref|NP_925294.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|44888325|sp|Q7NI36|SYA_GLOVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|35212916|dbj|BAC90289.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 871

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/906 (37%), Positives = 506/906 (55%), Gaps = 54/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + N ++IR  FL+FF+   H  LPS+SL+P +DPT++ T +GM+PFK +F G+ +     
Sbjct: 4   VLNGNAIREKFLQFFESKQHRRLPSASLVP-DDPTVLLTIAGMLPFKPVFMGKRERPAPR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+L+T  F+L
Sbjct: 63  VTTSQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKREAIGWAWELVTGVFEL 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL+++VY+EDEEA  LW++++GL   ++ ++  + NFW    TGPCGPCSEI++D  
Sbjct: 119 PPERLWVSVYEEDEEALVLWQEVAGLPPVRVRKMGADSNFWESGPTGPCGPCSEIYYDFH 178

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                G     ++  R++EI+NLVFMQ  + ++     LP+ +IDTG+GLERMA VLQ  
Sbjct: 179 PERGEG-DIDLDDDSRFLEIYNLVFMQLNRDSEGTFSELPRKNIDTGLGLERMAQVLQGV 237

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            NNY+ DL   +I+ +E ++G  Y   +     + ++I DH R+   L+ADG+LP N GR
Sbjct: 238 PNNYETDLVFPIIRKAEVLSGRDYFKADDQQKTSFKIIGDHTRAVVHLVADGVLPGNLGR 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+LRR++RR + + R+LG     +  +       MG AYP L++++ LI   L +E+ +
Sbjct: 298 GYILRRLIRRMVRHGRMLGIAGSFLPQMATVAVELMGGAYPNLLESRELILTRLATEESQ 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F +TL+ G  LLD +L     ++ ++G  AF LYDT+G PL++  ++   RGL  +D+ +
Sbjct: 358 FLQTLETGERLLDEILG--RSEKRISGVDAFMLYDTYGFPLELTMEVAAERGLE-VDVAA 414

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + +A+E+QR RAR  +      T +    +       T F+GY  +              
Sbjct: 415 YEEAMEKQRERARRAAK-----TVDLTQGASLADLERTDFLGYRNVAS------------ 457

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       ++VK ++ +GE +E A +G  V++V DQTPFY E GGQ+GD G   G 
Sbjct: 458 -----------KAMVKLVLFEGEPIERASAGASVQLVLDQTPFYPEGGGQIGDRGYLSGP 506

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + ++I DVQK+ + + +H   +ERG + T  S+   ID  +RR+   +H+ATHLL  AL
Sbjct: 507 DLLVRIEDVQKR-DTVILHTGRIERGTVATGDSVQAQIDLADRRRSQAHHTATHLLQAAL 565

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG  V Q GS +  D LRFD +  K ++ AE++ +ED VN  IA+   +   +M  +
Sbjct: 566 KKVLGESVQQQGSLVAFDRLRFDFSWPKALSQAEIQQVEDLVNTWIAEAHTLSQEVMPID 625

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A GA A  G KY   VRV+ V        S  LCGGTHV +T EI L  +VSE+ I 
Sbjct: 626 QAKARGALAFFGEKYGSEVRVIDVPG-----VSIELCGGTHVRNTAEIGLFKMVSETGIA 680

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G     +L  +D   + LA   KV    +  RV  +  + ++ Q      
Sbjct: 681 SGVRRIEAVAGPAVLEYLRLRDTVTRQLADEFKVQVEQIPQRVAALTSDLKQAQKQIDSL 740

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGIS 831
           K  L                    +   + + + + LKS  + L  K+   G ++L    
Sbjct: 741 KAALATARAEALLGQAETTGGFRVLVADLGDTEPEALKSAAEHLLAKLGEGGAVVLGSAP 800

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              K S++    +  + +  NA       AK+ GGGGG GRP++AQ+GG    K   A++
Sbjct: 801 AADKVSLVAAFGKGAVAKGLNAGKFVGEVAKITGGGGG-GRPNLAQAGGKQPEKLKNALS 859

Query: 891 GVASFL 896
             +S L
Sbjct: 860 EASSKL 865


>gi|259502864|ref|ZP_05745766.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041]
 gi|259169231|gb|EEW53726.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041]
          Length = 886

 Score =  838 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 504/918 (54%), Gaps = 65/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+FFQ++GH+++PS SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   DSAQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+  I  AW+LLT    F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKDEVIPWAWELLTSDDWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPARLYITYYPKDHDAYNKWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +     P   P      E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEFNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  +I+    +  G +Y  N  + V  ++I DH+R+ +F I DG LP
Sbjct: 240 IFENAPTNFETDLFMPIIKQVAALSAGKEYGANKADDVQFKIIADHIRTITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RRA+   + LG  EP +  L+P +   M   YPE++Q    I   ++
Sbjct: 300 SNMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V++   ++    ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLNLLNSVIADAKQNGSNQIDGRTAFKLYDTYGFPIELTKEYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR A  +  G G    +W   KE    ++++GY  L      
Sbjct: 420 T-VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGYTDLVVDD-- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEVVFDQTPFYAEAGGQL 528
                               + V  +   G+  +  A   Q +EV+FD+TPFYAE GGQ+
Sbjct: 474 --------------------AKVIGLAHDGQQADSAAPDDQNIEVIFDKTPFYAEMGGQV 513

Query: 529 GDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            DTG  I + G ++ ++ DVQ       +H   +    L+      L +D     ++  N
Sbjct: 514 ADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELT-APLKKGARYKLVVDRARHLKIEKN 572

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +L ++E  VN+ I + 
Sbjct: 573 HTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAMVNEQIFKE 632

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E+ 
Sbjct: 633 IPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNELG 687

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IVSE  + AG+RRIEA+T   A   L  ++  L+ +A  LK +Q   V  +V  + E
Sbjct: 688 LFKIVSEGGVGAGVRRIEAVTSSDAYDFLQQRNAMLEEVAGDLKAAQIKEVPHQVANLQE 747

Query: 766 EYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820
           E ++   Q+   + K+     +    ++      + I +EV      +L+ + D  + K 
Sbjct: 748 ELKQANKQVEALQAKIAAQQANSVFDEVQTTKGGTLIAAEVKVAGMGQLRQLADRWRAKG 807

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L G + + KA++L+ V+++ +     A DL +  A  + GG GG RP++AQ+GG
Sbjct: 808 LSDVLVL-GTANDGKANLLVAVSDEKVKAGLKAGDLIKAIASAIKGG-GGSRPNLAQAGG 865

Query: 880 PNGNKADQAIAGVASFLK 897
            +      A+     +L+
Sbjct: 866 KDPAGIPAALKLAKEYLE 883


>gi|228470921|ref|ZP_04055766.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228307318|gb|EEK16332.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/918 (37%), Positives = 502/918 (54%), Gaps = 68/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+ 
Sbjct: 1   MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI+ AW  LT+   L
Sbjct: 61  AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAIEFAWTFLTERLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+TV+          D+EA   W  +   + D+II  +  DNFW M +TGPCGPC
Sbjct: 121 PKDRLYVTVFGGSAEEGLSRDDEAAGYW--LQHTTEDRIIDGSRKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    +++    IEIWNLVFMQ++++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEERQEICGRDLVNKDHPLVIEIWNLVFMQYDRKADGHLEPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   +Q K +NYD DLF  LI+A E ++G +Y  N    +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++  + 
Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGGAYPEIVAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDI 404
           LI   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ + I
Sbjct: 359 LIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  RG+  +D ++F++ ++EQ+           +      W  L E+   + F+GY+ L+
Sbjct: 419 LSERGMT-LDQVAFDKLMQEQK-----SRARQAAAVDAADWEVLDEETSESTFVGYETLQ 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                +VV  +TPFYAE 
Sbjct: 473 IETHILRYRKVADKKHSY----------------------------YQVVLAETPFYAEM 504

Query: 525 GGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G  I  DG    I D  K+   + VH  I+       +  L+  +  + R   
Sbjct: 505 GGQVGDKGVLIAQDGTEYPILDT-KRENNLTVH--ILSTLPADPKQPLIARVGAELRHLT 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN  I
Sbjct: 562 EANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEI 621

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + P      +    A   GA AL G KY D VRV+          S  LCGGTHV+ST
Sbjct: 622 RADRPRDEHRNVPIAQAKEMGAMALFGEKYGDEVRVIKYG------DSVELCGGTHVAST 675

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV--VGR- 759
           G+I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+     L      +  + R 
Sbjct: 676 GQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPLKALDRL 735

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           + E  E+ + ++     +  Q+ ++ L+         +  +   + S   K V   ++++
Sbjct: 736 IAESAEQRKAIEQYTKAQAEQIALQALADQTKRGETTIVTVNKSMSSDVAKDVAGTIRER 795

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++ GG GGG+PH A +G
Sbjct: 796 LQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNAGKLIKEVASLIKGG-GGGQPHFATAG 854

Query: 879 GPNGNKADQAIAGVASFL 896
           G N      AI  + S +
Sbjct: 855 GRNPEGLQAAIDHIVSLI 872


>gi|313891768|ref|ZP_07825373.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|313119762|gb|EFR42949.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E]
          Length = 869

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/904 (34%), Positives = 495/904 (54%), Gaps = 53/904 (5%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    +TT
Sbjct: 4   NDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHRITT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+   +D+ 
Sbjct: 64  SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKMDKE 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T++ +D++A+  W K  G++ + I R+   DNFW + E GPCGP SEIFFDQGE  
Sbjct: 120 RLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQGESF 176

Query: 184 PGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +G+R++EIWNLVF QF++Q       L K +IDTG GLER+A V+Q+K N
Sbjct: 177 GTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLVKKNIDTGAGLERLAAVMQQKKN 236

Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DLF  +I  + +++G  Y  + ++ V  +VI DH R+ + +I+DG+LP+NEGRGYV
Sbjct: 237 NFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ + +L+G  +  M  ++  +   M   YPEL + +  I++    E+ERF  
Sbjct: 297 LRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEERFQS 356

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL+ G  LL  ++    K  I  L+G+  FKLYDT+G P ++  +I    G++ ID   F
Sbjct: 357 TLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDKEGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             ++ +Q+ RAR   + + +                            K +  D   L  
Sbjct: 416 IISMNKQKERARNARVKISA----------------------------KVLTPDTTKLDA 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           K        V + +  + + GE +  A  G+ + V+    PF+AE GGQ+GD G      
Sbjct: 448 KNLTVKDEDVDTTIVMLGKNGEEIVSATDGEDLVVILKNNPFHAEGGGQMGDIGILRNSS 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ + +K  +GI      +  G +     + + +D   R  L+ NH+ THLLH AL 
Sbjct: 508 GVFEVHNTKKLPDGIVYLIGTITEGKISVNDMVEVKVDRVRRAALAKNHTGTHLLHAALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG   +Q GS + PD LRFD T ++P+T+ ++  +E  VN+ I  +L + T+ +  E+
Sbjct: 568 QVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILGSLTLTTKEVPLEE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  +GA AL G KY   VR+V +     G  S  LCGG+H  +TGE+    I+SES I +
Sbjct: 628 ARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRI A+TG  A   ++   + +++ A  LK  +  ++ +++++  + +K +    K K
Sbjct: 683 GLRRIVALTGISAYEAMVNDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDIIKLK 742

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +    +L            ++F +      +  EL+ + D ++ K+  G  +L  +S  
Sbjct: 743 NEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSVSNG 802

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K   V +   E +    +   +    AK+  GG GGG+P +AQ+GG + +K + AI    
Sbjct: 803 KVNFVGMASKEAVEAGIHMGKVVSQVAKICNGG-GGGKPTVAQAGGKDISKVEDAIKESE 861

Query: 894 SFLK 897
             ++
Sbjct: 862 KIIE 865


>gi|159900152|ref|YP_001546399.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|205830067|sp|A9B660|SYA_HERA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159893191|gb|ABX06271.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 889

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/901 (38%), Positives = 498/901 (55%), Gaps = 56/901 (6%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           S +R  FL++F + GH ++PSSSLIP ++PTL+FT +GMV F ++F G+E   Y    + 
Sbjct: 4   SELRQRFLDYFARQGHAVVPSSSLIPADNPTLLFTVAGMVQFNDVFLGRESRPYSRAVSS 63

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R  GK NDL+NVG + RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E  LD +R
Sbjct: 64  QKCLRISGKQNDLENVGPSPRHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTQEIGLDPKR 123

Query: 125 LYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +++++Y+ DE      EA  LW  ++ + A++I+R    DN WS  + GP GPCSEI + 
Sbjct: 124 MWVSIYEGDEQIPADEEAHDLW--LAYMPAERILRFDAKDNLWSAGDVGPRGPCSEIHYY 181

Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+     +P G + E + Y+EIWNLVFMQ+ +       +LPK SIDTGM LER+A V 
Sbjct: 182 IGDDPDNQVPEGVNSEDDTYMEIWNLVFMQYNRDENGVLTLLPKPSIDTGMSLERLAIVK 241

Query: 238 QEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q    +Y+ DLF  +I    ++  TG  +   N   + V+ DH RS +F+IADG+ P NE
Sbjct: 242 QGVFRSYETDLFTPIIHTVMELLGTGSDHYQANSSAYHVVADHSRSIAFMIADGLRPGNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GR YVLRR++RRA  + + +G+  P +   +  +   MG+AYPEL   +  I E +  E+
Sbjct: 302 GRSYVLRRLVRRAAYFGQTIGFKAPFLAETIATVIDMMGAAYPELRSKQAYIAEVVTGEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF KTL  GL  L+ +L +     + +G  AFKLYDT+G PLD+ + I+  RGL  +D+
Sbjct: 362 ERFNKTLAGGLRQLEAMLPNQADKAVFSGADAFKLYDTYGFPLDLTERIVAERGLT-VDL 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             +   LE QR+R R  +       TE+ W         T F GY+ L            
Sbjct: 421 AGYEAELEAQRARGRGAAQFKKGAVTER-WAE--RNLAPTSFTGYNELESWGH------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           V A+   GE +     GQ+V  V D+TP YAE+GGQ+GD+G  +
Sbjct: 471 ----------------VLALEFDGEELGTVQRGQEVAFVLDRTPCYAESGGQMGDSGVLV 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G    + I DVQK   G+FVH   V +G +     + +T+D   RR +  NH+ATHLLH 
Sbjct: 515 GPHGTIVIDDVQKPVPGVFVHRGKVSKGSVSLGEQVTVTVDAARRRDIVRNHTATHLLHR 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL   LG H  Q GS + P+ LRFD  + K ++S +L+ IED VN  I  +  V    M 
Sbjct: 575 ALRDTLGDHAEQKGSLVAPERLRFDFNNQKGLSSEQLQQIEDQVNAWIRADSKVEAAEMA 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----------SSALCGGTHVSSTGEI 705
              A   GA AL G KY D VRVV+V   +   H          S  LCGG HV+ TGEI
Sbjct: 635 LPQARELGAMALFGEKYGDVVRVVTVGCGNASDHIHTNSEAPVCSRELCGGVHVARTGEI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSE S+ +G+RRIEA+TG+ A   +  Q + +++L   L    G V  +++ +  
Sbjct: 695 GFFKIVSEGSVASGVRRIEAVTGRAAAEWVSQQAQLIRTLGDKLGAQPGKVEEKLDALLL 754

Query: 766 EYRKLQLIHAKRKLQLNV---EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + +  +    + + ++     + L   KI  A    +   +   D+   + + + L+ KI
Sbjct: 755 DQKARRDEIERLRGEIAAGQVDSLLAQKIEQAGTPLVVARVEASDADSFRRLGEQLRDKI 814

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            SG+++L G   + K  +L   T D +    +A +L +  A  +GGGGG GR   AQ+GG
Sbjct: 815 GSGVVIL-GTVIDGKPLLLAAATADQVKAGRHAGNLVKALAAKVGGGGG-GRADFAQAGG 872

Query: 880 P 880
            
Sbjct: 873 R 873


>gi|328950125|ref|YP_004367460.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328450449|gb|AEB11350.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 896

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/935 (35%), Positives = 492/935 (52%), Gaps = 88/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK------ 55
              + IR  +L+FF+  GH  LPS SLIP +DPTL+FT +GM P K  F G         
Sbjct: 1   MRTAEIREKYLKFFESKGHLALPSFSLIPEDDPTLLFTVAGMAPLKPYFLGARPVFPGHE 60

Query: 56  PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             ++ V T QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK  AI  AW+ LT
Sbjct: 61  GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKREAILWAWEFLT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGP 168
             +   LD  RLY+TV+++D+EA+++W+   G+  ++I R   ++NFW          GP
Sbjct: 117 SPEWLGLDPDRLYVTVFEDDDEAYRIWRDEVGVPEERIGRFGEDENFWPANAISQGPNGP 176

Query: 169 CGPCSEIFFDQGECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNK----QERFILPKM 222
           CGPCSEIF+D+G           ++  G+R++E+WNLVF Q+ +        +   LP+ 
Sbjct: 177 CGPCSEIFYDRGPGFGSADETGPNTGSGDRFVEVWNLVFTQYNRTGPVPGPGQLEPLPQR 236

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282
           +IDTGMGL R+A +LQ+  + YD D F+ +I    +++G  YEG   V+HRVI DH+R+ 
Sbjct: 237 NIDTGMGLYRVAAILQDVQDFYDTDTFRPIIDRVVELSGRPYEGAASVSHRVIADHVRAV 296

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
              ++DG + +N GRGYV+RR++RRA+ +  LLG  EP M  L P +   +G  YPE+  
Sbjct: 297 VAALSDGAVFSNTGRGYVIRRLLRRAVRHGYLLGLREPFMYRLAPVVAEVLGDYYPEMRD 356

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
                E+ +R E+ERF  TL+ G+  L+ +L  + +  +L+G+ AF+LYDT+G P D+  
Sbjct: 357 NLPATEKAIRLEEERFLTTLESGIRRLEDLLQGIPQGGVLSGEEAFRLYDTYGFPWDLTV 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGY 460
           +I   RG+  +D   F +A+  Q+ RAR  S   G     + +   +L    GAT+F GY
Sbjct: 417 EIAAERGVR-VDREGFERAMARQQERARKASAFTGEVFVKSAEALDTLVAARGATEFTGY 475

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             L                            V  I++    +E A +G++V+VV D+TPF
Sbjct: 476 TTLED-----------------------EGEVLLILEGEAELERAEAGREVQVVLDRTPF 512

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+GD G     G R ++   +K  +GI +H   VE G+L     +   +D   R
Sbjct: 513 YAEGGGQIGDFGYLEWAGGRARVVTTRKSPQGIHLHQVRVEEGVLEPGRRVRAVVDPARR 572

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P++  EL+ IE  VN
Sbjct: 573 -ATERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLSLEELERIERLVN 631

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSAL 693
             +  + PV       E+A   GA AL G KY D VRVVSVE         D  V S  L
Sbjct: 632 RWVQADFPVTWTYKPLEEAKREGAMALFGEKYADVVRVVSVEGSPDVRGILDAPVTSKEL 691

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV  TGEI    I SE ++ AG+RRIEA+TG+ A +   G   + ++LA  L  + 
Sbjct: 692 CGGCHVRRTGEIGYFVIRSEEALAAGVRRIEALTGEAAVAFARGLLNRTQALARELGTTV 751

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSK 807
             V  RV+++ EE +       + K +L    L         +     +++  +S +D  
Sbjct: 752 EAVPERVQKLQEELKARGREIERLKAELARAQLGTGGKAEAREAGGWRYLAAELSGLDMN 811

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR--------- 857
            L+   D L +      + LV +  +    +++ V+    +R   A  + +         
Sbjct: 812 ALRRAADELLEARG---VDLVAVGADG--MLVVKVSPAAQERGLAAGRVMKALAEAAGGR 866

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              +             AQ GG +  +A  A+  V
Sbjct: 867 GGGREAL----------AQGGGFDLKRAFAALEEV 891


>gi|227505016|ref|ZP_03935065.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198380|gb|EEI78428.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 895

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/930 (35%), Positives = 494/930 (53%), Gaps = 69/930 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVKTGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT    
Sbjct: 60  LATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWSLLTGSVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA  +W +  G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAADIWHEQVGVPRERIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+         +    LPK +IDTG+
Sbjct: 176 IYYDRGPEY-GAEGGPVADDNRYMEIWNLVFMQNERGEGIGKGNFEILGPLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----GNNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I A+E++TG KY       + +  RVI DH R+   
Sbjct: 235 GIERVACILQGVDNVYETDLLRPVIDAAEELTGAKYGEGASDQDNIRFRVIADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  ARLLG T P M   +  +   M  +YPE+   +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSARLLGATAPSMERFMNTIMDTMTPSYPEIADNR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  +  L         +IL+G+ AF+L+DT+G P+
Sbjct: 355 ERILRVAIAEEKAFLKTLESGTKLFDEAVEALKSTSRAATPKILSGEKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  FN+A+ EQR RA+A +     G  +   +        T F 
Sbjct: 415 DLTLEMAQEAGLE-VDMDGFNEAMGEQRRRAKADNQAKKHGHADLSLYREWVDNNPTVFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY+ L                          + +  +V+ G+ V E   G++VEV+ DQ+
Sbjct: 474 GYETLTSD-----------------------AKIIGLVRDGQKVNEVHEGEQVEVILDQS 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAE+GGQ  D G        L++ DVQK  + ++VH A V  G L    ++   +D +
Sbjct: 511 PLYAESGGQTADRGRIYAGESLLEVGDVQKIGKKLWVHKATVTAGGLDLGSTVTAEVDQK 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I   
Sbjct: 571 WRHGAVQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSPAQLEEIALI 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  +  +  V T   + E A   GA AL G  Y  +VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAVDAHFAVNTIETSLEQAKQMGAMALFGENYGSQVRVVEM----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V++T EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LK+   ++  
Sbjct: 687 VANTSEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGISRELKIQSEDLPE 746

Query: 759 RVEEIWEEYRKLQL---IHAKRKLQLNVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811
           R+ ++ E+ +  +       K +L     D+    I  VN  + +     + V   +L++
Sbjct: 747 RIAQLTEKLKAAEKQIDELHKAQLMAQTADMIGGAIT-VNGFAVVSVRLPNNVSGGDLRT 805

Query: 812 VMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ ++    G+++L   ++  K   ++  T+  + R   A DL +  +  +  G G
Sbjct: 806 LATDIKNRLGDEAGVVVLASENEGGKTPFIVGATKAAVARGIKAGDLVKTISGYV-DGKG 864

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG+P MAQ  G N      A   +   L+K
Sbjct: 865 GGKPDMAQGSGANAEGLQAAFNALRDELEK 894


>gi|254425077|ref|ZP_05038795.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196192566|gb|EDX87530.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 887

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/905 (37%), Positives = 497/905 (54%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL F++  GH +L S+SL+P  DPT++ T +GM+PFK IF GQ    +   T
Sbjct: 19  SGADIRKQFLSFYEARGHRILDSASLVP-EDPTVLLTIAGMLPFKPIFLGQRSVEFDRAT 77

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+ F L  
Sbjct: 78  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKAQAIAWAWELSTEIFKLPA 133

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+  +++ +D+EAF +W+   G+  ++IIR+   DNFW    TGPCGPCSE+++D    
Sbjct: 134 DRIVPSIFRDDDEAFAIWRDEIGIPENRIIRMGEADNFWKSGPTGPCGPCSELYYDFHPE 193

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   N
Sbjct: 194 -RGDDTIDLEDDTRFIEYYNLVFMQYNRDAEGNLEPLQAQNIDTGLGLERMAQILQGVPN 252

Query: 243 NYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA+ Q+  + Y        V+ +VI DH+R+   ++ADGI  +N GRGY
Sbjct: 253 NYETDLILPIIQAAAQIANLDYHQATDAQKVSLKVIGDHVRAVMHMVADGISASNVGRGY 312

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RLLG   P    +          AYP +   +  I+  L  E+ +F 
Sbjct: 313 VLRRLIRRVVRHGRLLGIDRPFTTEVAERSIALTEDAYPAVRTRETAIKNELDREETQFL 372

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL RG   L  +L+   K   ++G  AF+LYDT+G PL++ Q+I    G+  +D   F 
Sbjct: 373 QTLARGEKRLADILAEQPKQ--VSGKDAFELYDTYGFPLELTQEIAEESGIT-VDTERFE 429

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR R++A    +   T +    +L E+  +T+FIGY  L                
Sbjct: 430 IEMSQQRERSKAAHETIDL-TVQSSLDTLAEQIDSTEFIGYQRLNS-------------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+AI+  GE V+ A +G  V++V DQTPFYAE+GGQ+GD G   GD +
Sbjct: 475 ---------QSRVEAILINGESVDLAETGDDVQIVLDQTPFYAESGGQIGDRGYLSGDTV 525

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DV+K+    FVH   VERG L  +  +   ID   RR+   NH+ATHLL  AL +
Sbjct: 526 VIRIEDVKKE-GAFFVHFGKVERGSLTVDSQVSAQIDRACRRRAQANHTATHLLQAALKS 584

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   +SQ GS +  D LRFD    + +T  +L+ +E  VN  IA+      + M   +A
Sbjct: 585 LVNESISQAGSLVDFDRLRFDFHCPQALTPEQLQQVEKQVNSWIAEAHDADVQTMPIAEA 644

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ I AG
Sbjct: 645 KAKGAVAMFGEKYGDEVRVIDYPG-----VSMELCGGTHVSNTAEIGVFKIISETGIAAG 699

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G     +L  +D  ++ L++  K     +  RV  +  E +  Q   A  K 
Sbjct: 700 IRRIEAVAGPAVLDYLEVRDRIVRDLSARFKTKPEEISDRVTALQTELKNAQKDLAALKS 759

Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L +            I  +  +   +  V++  LK+  + L +K+  G ++L  +  E 
Sbjct: 760 ELALAKSDQLLNKAEAIGGIPIIVANLEAVEADALKTAAERLLQKLGDGAVVLGSVPTEG 819

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K S++   ++ ++ +   A       AK+ GGGGG GRPH AQ+GG +  K  +A+    
Sbjct: 820 KVSLVAAFSKPVISKGLQAGKFIGGIAKLTGGGGG-GRPHFAQAGGRDATKLPEALEVAK 878

Query: 894 SFLKK 898
             +K+
Sbjct: 879 DQIKE 883


>gi|222153358|ref|YP_002562535.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|222114171|emb|CAR42689.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 873

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/917 (35%), Positives = 502/917 (54%), Gaps = 68/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y ED +++  W  + G+    +I +   +NFW +   GP GP +EIFFD+
Sbjct: 120 FPKEKLYMTYYPEDMDSYNRWISL-GVDPSHLIPL--EENFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF    +    E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I   E+++G  Y+ + + ++ +VI DH+R+ SF I DG 
Sbjct: 236 RLVAVMQGAKTNFETDLFMPIISEVEKLSGKPYDQDGDNMSFKVIADHIRALSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + R LG TE  +  L+  +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMESYYPEILEKRDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++    
Sbjct: 356 IKREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDIFKLYDTYGFPVELTEELAEDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++EQ+ RARA  +  GS   +    +              +   S F
Sbjct: 416 GYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLA-------------GITEASVF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
             E+               +++ +  IV   E  +    GQ   +VFD+TPFYAE GGQ+
Sbjct: 462 SYEE-------------ETLTANLSVIVVDNERSDMVSEGQ-ALLVFDRTPFYAEMGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    D   +  ++TDVQK   G  +H   V    L  + S VL ID++ R  +  N
Sbjct: 508 ADHGVIKNDKGDILAKVTDVQKAPNGQALHTVDVL-ASLSIDSSYVLEIDHKRRYAVEKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  I+G H +Q GS    + LRFD TH + +T+ EL+ IE+ VN  I   
Sbjct: 567 HTATHLLHAALHNIIGDHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIWNA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T   + + A + GA AL G KY   VRVV++     G +S  LCGGTH+S+T EI 
Sbjct: 627 IAVNTIETDVDTAKSMGAMALFGEKYGKVVRVVTI-----GDYSVELCGGTHLSNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IV E  I +G RRI A+TGQ+A      +++ LK +A+ LK  Q   V  +V  + E
Sbjct: 682 LFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVASLSE 741

Query: 766 EYRKLQLIH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R LQ  +    ++       DL     +   + +++  +S  D+  L++  D  ++K 
Sbjct: 742 QVRDLQKENAELKEKAAAAQAGDLFKDVKEANGIRYIAKQVSVSDAGALRTFADNWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S I++LV    EK   ++   T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDILVLVASIGEKVNVLVASQTKD----VHAGNLIKELAPIVS-GRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVASFLK 897
           + ++ +  ++ VA  +K
Sbjct: 857 DASQIETLLSSVADKMK 873


>gi|193214313|ref|YP_001995512.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|193087790|gb|ACF13065.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 887

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/925 (38%), Positives = 512/925 (55%), Gaps = 73/925 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF    HE++ S+ +IP +DPTL+FTN+GM  FK++F G     Y   
Sbjct: 1   MTSKEIRQAFLDFFTSKQHEIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGIGSRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELLTDVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +D+EAF+LWK  + ++A  I R    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 KDRLYATVYKDDDEAFELWKSETDIAASHIQRHGEKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    +      IEIWNLVF+Q+ +    +   LP   +DTGMG ER+A VLQ KT
Sbjct: 181 DK-SGAALVNAGRPEVIEIWNLVFIQYNRDAAGKLHPLPAKHVDTGMGFERIAAVLQGKT 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  +++    +TG  Y G    +  +  RV+ DH+R+ +F IADG  P+NEGR
Sbjct: 240 SNYDSDVFTPILKKIGDITGKTYGGSMESDTDMAMRVLADHIRTLAFAIADGGTPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RR + YAR LG  EP +  L   LC  MG  +PEL++ + +IE+ +++E+E 
Sbjct: 300 GYVLRRILRRGVRYARQLGQNEPTLYKLTEVLCETMGDVFPELVERRQVIEQVIKAEEES 359

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TLDRG+ + +GV   L K   ++++G  AFKLYDT+G PLD+ + +    GL+ +D 
Sbjct: 360 FLQTLDRGIEIFNGVTEKLKKSGGKVIDGADAFKLYDTYGFPLDLTRLMAEEIGLS-VDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ+ RAR       +   E   +++  +   T+F GY+ L     +   +K 
Sbjct: 419 DGFLANMKEQKDRARKDRKEKSAVAEESGEWTIFAETLKTEFSGYETLEQKSRIARAKK- 477

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                          +G+K+ +V ++TPFYAE+GGQ GD+G   
Sbjct: 478 -------------------------------AGEKLLLVLEKTPFYAESGGQQGDSGEIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV---------------LTIDYQNR 580
            D     I+D QK  EG  V H + +     +  ++                  ++ + R
Sbjct: 507 TDAFSFHISDTQK--EGDLVLHIVDKITDKESGDAVAIENFDLEKLSSLEADAKVNAETR 564

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              + NH+ATHLLH AL  +LG HV Q GS + P+ LRFD +H + ++   +  IE  VN
Sbjct: 565 GATARNHTATHLLHEALREVLGEHVQQKGSLVGPERLRFDFSHFERVSEEAMAQIEQIVN 624

Query: 641 DIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I     V     +  EDA   GA A  G KY D VRVV V       +S   CGGTH+
Sbjct: 625 AQIRMAKAVKKHADVPFEDAKKMGALAFFGDKYGDFVRVVEVPG-----YSVEFCGGTHL 679

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVG 758
            + GEI LL IVSESSI +GIRR+EA+TG+ A         KL++L   L     + V+ 
Sbjct: 680 DNIGEIGLLKIVSESSIASGIRRVEAVTGKVAEDLFRSDRRKLQALRDTLSAQSEDAVLE 739

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVM 813
           RV++I EE ++L+    K +L+L    L     +   +  V  ++  +    + ELK + 
Sbjct: 740 RVQKILEEKKELEKEVEKLRLELAASALDGLVKNAETLNGVKILAAEVKVSGADELKQLG 799

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGR 871
           +  + K+ SG ++L+G +  +KAS++  V++D++   +  A  L    AKV+ GGGG GR
Sbjct: 800 EMARSKLGSG-VLLLGAALGEKASLVAAVSDDVIKSHKLQAGKLVGEVAKVVKGGGG-GR 857

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P++A +GG +  K  +AI      +
Sbjct: 858 PNLATAGGKDPQKLSEAIEKFKEIV 882


>gi|205830241|sp|Q31PW3|SYA_SYNE7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/905 (38%), Positives = 512/905 (56%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 7   SGDQIRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 66  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 182 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +    V+ +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 241 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 301 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 361 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   T+F+GY                   
Sbjct: 418 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPTEFVGYG------------------ 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 459 -----DAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 514 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGGG GRP++AQ+GG + +K  +AIA  
Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGG-GRPNLAQAGGRDASKLPEAIAAA 866

Query: 893 ASFLK 897
              LK
Sbjct: 867 LDQLK 871


>gi|260663392|ref|ZP_05864283.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
 gi|260552244|gb|EEX25296.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN]
          Length = 882

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 499/915 (54%), Gaps = 63/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D ++     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +   P   P      E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+  E  +  K  G    + V  ++I DH+RS +F I DG LP
Sbjct: 240 IFENAKTNFETDLFMPLIKQVEVFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V+    +   + ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR A  +  G G    +W +  ++   ++++GY  L      
Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGYTDLVVDN-- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V  +   G+  ++A  GQ+V+V+FDQTPFYAE GGQ+ 
Sbjct: 474 --------------------AKVIGLAADGKQADQAEPGQQVDVIFDQTPFYAEMGGQVA 513

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG  I +  ++   + DVQ       +H   +    ++      L +D     ++  NH
Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELT-APIKKGARYKLVVDRARHLKIEKNH 572

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I + +
Sbjct: 573 TATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEI 632

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI L
Sbjct: 633 PVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGL 687

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV+Q   V  RV E+ ++
Sbjct: 688 FKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQ 747

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++    +   + +L  +          + A    ++  +      +L+ + D  ++K  
Sbjct: 748 LKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDY 807

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L   + + KA++L+ V + L     A DL +  A  + GG GGGRP +AQ+GG N
Sbjct: 808 SDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKN 865

Query: 882 GNKADQAIAGVASFL 896
                +A+   + F+
Sbjct: 866 PAGISEALKLASQFM 880


>gi|325833382|ref|ZP_08165831.1| alanine--tRNA ligase [Eggerthella sp. HGA1]
 gi|325485306|gb|EGC87775.1| alanine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 878

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/928 (34%), Positives = 489/928 (52%), Gaps = 87/928 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59
              + IR  +L FF++ G +  PSSSLIP +DP+L+ T++GMV FK  F  Q+     Y 
Sbjct: 4   MTSAEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFKE     A++  T+   
Sbjct: 63  GTTTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TVY +D+E  ++WKK+ G+  D I R+  +DNFW    TGPCGPCSEI+FDQ
Sbjct: 119 LPAERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQ 177

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P  +   + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A +L
Sbjct: 178 GEDFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAIL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ D+ + L+   E++TG  Y  +    ++ R++ DH R+ +F+IADGILP+NE
Sbjct: 238 QGVQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+
Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG  L +G   LD  L+ L + E+L GD AF L+DT+G P+++ +++   RG+  +D+
Sbjct: 358 ERFGANLRQGRAFLDEALAEL-EGEVLPGDRAFTLHDTYGFPVEVTRELCDERGIE-VDM 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F + ++EQR RARA +             +   + E  G T+F+GY            
Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMDEILEAVGPTEFLGY------------ 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V A+V+ G  V+   +G +  VV D TPFYAE GGQ+GD G
Sbjct: 464 -----------TKNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGDAG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + + D ++  +G+  H   VE G L    ++   ID   R ++  NH+ATH+
Sbjct: 513 VLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTATHI 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N  I +N PV   
Sbjct: 573 LHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIVEVERLANQKIMENHPVRAY 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  + I S
Sbjct: 633 ETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKITS 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     +  + LQ 
Sbjct: 688 ETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDLQT 747

Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + +  +  + ++          A    +   + E D+ +++++ D L+ ++      
Sbjct: 748 KLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQPGAA 807

Query: 827 LVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG------ 879
           ++   K+ K ++L   T + +   F+A  + +  +                  G      
Sbjct: 808 VLATEKDGKPTLLAAGTPEAVEAGFDAGAVIKAIS------------------GNIKGGG 849

Query: 880 -----------PNGNKADQAIAGVASFL 896
                       + +  D A+      L
Sbjct: 850 GGKAAMAQAGGKDASGIDAALQAARDML 877


>gi|255321362|ref|ZP_05362522.1| alanyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255301515|gb|EET80772.1| alanyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 849

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/894 (38%), Positives = 523/894 (58%), Gaps = 53/894 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  +L FF   GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+       + T+ 
Sbjct: 2   DIREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW++   ++ ++I R   +DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHESDDEAFALWEQ--HIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +  +   LPK SIDTGMGLER+  +++ K +N
Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIMEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI+   ++ G  Y   +  ++RVI DH+RS +FL+A G     EGRGYVLRR
Sbjct: 239 YDSSLFMPLIEEVAKLCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E +R E+ERF  T+ 
Sbjct: 299 ILRRAIRHGYLLGIREPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIRLEEERFLATIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L+     +I +G  AFKLYDT G PLD+  D+L  +GL  +D   F++ + 
Sbjct: 359 SGLELFESELARTK--DIFSGKAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKFDELMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  + +  + +L EK+G  +F GY+ L                    
Sbjct: 416 EQKARAKAAWKGSGDKSAKGDFKALLEKFGENKFSGYEELE------------------- 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S ++  + +  +  +   +G++   +FD TPFYA++GGQ GD+G   G      +
Sbjct: 457 ---RTSRVLALLDEDFKETQILKAGEQGWAMFDVTPFYAQSGGQAGDSGEIEG---VADV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK   G+ + +  V++  L+   ++ L +  + R +++ +HSATHLLH AL ++LG+
Sbjct: 511 LDTQK-FFGLNLSNVAVKK-ELKIGDTVKLKV-SEQRAEIARHHSATHLLHAALRSVLGT 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H++Q GS +    LRFD +H K +T+ EL  IE+ VN  IA+++   T IM+ E+A  SG
Sbjct: 568 HIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNSAIAESIAAKTEIMDIEEAKNSG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D+VRV+S      G  S  LCGGTHV++  +I   +I  E  + AG+RRI
Sbjct: 628 AIALFGEKYADKVRVLSF-----GEVSKELCGGTHVANLSQIGAFFITKEGGVSAGVRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A +       +++ L + LK      +  V+++  E + L+    + K     
Sbjct: 683 EAVCSKAALNLAKAWRGEIEELKTELKS--AEPMNAVKKLKAEIKSLKDKTKQAK----- 735

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            D     + +VN     ++ +D  ++K+ +D  + + +   I+LV +++E K ++   V 
Sbjct: 736 -DAHALAVVNVNETKLCVAVIDGGDIKATIDEFKNENEKAAILLVQVNEEGKIAMAAGVK 794

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                   A +  + +A++L GG GGG+   A +GG N    + AI     F K
Sbjct: 795 NAP---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAIRQALEFAK 844


>gi|312195530|ref|YP_004015591.1| alanyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226866|gb|ADP79721.1| alanyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 883

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/915 (36%), Positives = 492/915 (53%), Gaps = 58/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL  F++ GH ++PS+SLI   DPTL+  N+GMVPFK  F G   P     
Sbjct: 1   METAEIRRRFLNHFEQRGHLVVPSASLIA-EDPTLLLVNAGMVPFKPYFLGDLTPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D+DNVG+T RH +FF+M GNFSFG YFK   I  A++LLT+ +   
Sbjct: 60  TSVQKCVRTV----DIDNVGQTARHASFFQMCGNFSFGDYFKAEVIPWAFELLTEGYGFK 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA ++WK +  L A++I R    DN+WSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAEEIWKGL--LPAERIQRRGKEDNYWSMGVPGPCGPCSEIYFDRGP 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLERMATV 236
              G   G   +  RY+E+WNLVFMQFE+             LP  SIDTGMGLERMAT+
Sbjct: 174 AY-GRDGGPEADENRYLEVWNLVFMQFERGEGAGYEFPILGDLPAKSIDTGMGLERMATL 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++  + ++TG  Y     + V  RVI DH R+++ LIADG++P+N
Sbjct: 233 LQGVENLYEIDISRPVLDRAGELTGKTYGAQHGDDVRLRVIADHTRTAAMLIADGVVPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+   RLLG  EP+M +L   + + MG  YPEL+     I      E
Sbjct: 293 EGRGYVLRRMLRRAVRNVRLLGGREPVMENLFGVVQSAMGPIYPELVDRAAAITAVAVGE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  + D  +          L G+ AF+L+DT+G P+D+  ++   +GL  
Sbjct: 353 ELAFLETLRTGTTIFDVAVGKAKSTGAAQLAGEEAFQLHDTYGFPIDLTLEMAAEQGLT- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + ++ QR  A+A       G  +  ++  +  + G T F GY  L        
Sbjct: 412 VDEPGFRRLMDRQRELAKADRASRRIGNVDLSVFRPILARSGPTSFTGYTEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQ--QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                            ++ V  +V    G  V  A  G+ V VV D TPFYAE+GGQ  
Sbjct: 464 ---------------TRTATVVGLVSAATGLGVPAAGEGEDVGVVIDSTPFYAESGGQEA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G  + DG  ++I DVQK    + +H   V RG +R    + +T+D   RR +S +H+A
Sbjct: 509 DLGRFVFDGGEVEIIDVQKPIPDLVLHRGKVVRGEIRLGAEVEVTVDADRRRAVSRSHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      I +A L  +ED VN++  ++L V
Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGSIPAAVLADVEDEVNEVALRDLDV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              + ++++A   GA AL G KY +RVRVV     D G +S  LCGGTHV+ + ++  + 
Sbjct: 629 TAFVTSQDEARRIGAMALFGEKYGERVRVV-----DVGDYSRELCGGTHVARSAQLGAVK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR- 768
           ++SESSI AG RR+E + G  A  +L  +   +  L+  LKV    +  RV +I    R 
Sbjct: 684 LLSESSISAGTRRVEGLVGLDAFRYLAREHLLVSQLSGLLKVRADELPDRVSDIVTRLRD 743

Query: 769 -KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKKIQSG 823
            + +L   + +  L       +   DV  ++ + +E        +L+ ++  ++ ++   
Sbjct: 744 AERELERVRGEAVLAGAAGLANSAVDVGGVALVAAEAPNGTSPDDLRKLVLDVRGRLIDR 803

Query: 824 IIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             ++   S   + + L+V T +        A DL + ++  L GG GGG+P +AQ GG +
Sbjct: 804 PAIVAAASAGGERAFLVVATTEGSRGRGLKAGDLVKAASAEL-GGSGGGKPDVAQGGGSD 862

Query: 882 GNKADQAIAGVASFL 896
                +A+A V   +
Sbjct: 863 ITGVGRALAKVRDLV 877


>gi|325697162|gb|EGD39049.1| alanine--tRNA ligase [Streptococcus sanguinis SK160]
          Length = 872

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/914 (35%), Positives = 495/914 (54%), Gaps = 68/914 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  +L+F+   GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT  + FD
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPEWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
             + +LY+T Y +D++++  W  + G+    +I I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLE
Sbjct: 176 GEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGI 290
           R+  V+Q    N++ DLF  +I+  E+++   Y+ + + ++ +VI DH+RS SF I DG 
Sbjct: 236 RLVAVIQGAKTNFETDLFMPIIREVEKLSSKVYDQDGDNMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA  + + L   EP +  L+P +   M S YPE+++ +  IE+ 
Sbjct: 296 LPGNEGRGYVLRRLLRRASMHGQKLDINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+E F +TL  G    + +++ L      ++ G  AFKLYDT+G PL++ ++I    
Sbjct: 356 IKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEIAEEA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D   F  A++EQ+ RARA  +  GS   +                          
Sbjct: 416 GMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQN------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  + +  +         +++ + A+V     VE   SG    ++F +TPFYAE GGQ+
Sbjct: 450 -ETLQAITVESAFNYEKEELTAELLAVVADDAAVESVESG-TAALIFAETPFYAEMGGQV 507

Query: 529 GDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  Q+TDVQK   G  +H   V    L    S  L ID+  R ++  N
Sbjct: 508 ADHGQIFDGAGNLVAQVTDVQKAPNGQPLHTVEVL-APLALGQSYKLEIDHSRRHRVMKN 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + 
Sbjct: 567 HTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQEVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L + T   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI 
Sbjct: 627 LAIETVETDIDTAKGMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E  I +G RRI A+T + A +    ++E LK++A+ LK  Q   V  +VE + E
Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKEVPHKVEALQE 741

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R+LQ  +A+ K +           +  +    +F++  +S  D+  L++  D  ++K 
Sbjct: 742 QLRQLQKENAELKEKAAAAASGEVFKNVQEANGHSFIASQVSVSDAGALRTFADTWKQKD 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    +K   +    T+D     +A +L +  A ++  G GGG+P MA +GG 
Sbjct: 802 YSDVLILVAAIGDKVNVLAASKTKD----IHAGNLIKELAPIV-DGRGGGKPDMAMAGGS 856

Query: 881 NGNKADQAIAGVAS 894
             +     +A VA 
Sbjct: 857 KQSAIPALLAAVAE 870


>gi|75906451|ref|YP_320747.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|123745317|sp|Q3MGN4|SYA_ANAVT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|75700176|gb|ABA19852.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
          Length = 880

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/906 (37%), Positives = 518/906 (57%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IRT FL+F+ + GH++L S+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNEIRTRFLDFYAQRGHQILASASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFKE+AI   W++ T+ F L +
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EA+ +W+   G++  +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLVVSVFEEDDEAYVIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLER+  +LQ+  N
Sbjct: 184 -RGDENIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQQVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAKIAGIDYHSSDETTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G +   +  +         SAYP + + + +I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFINQVAERAIALSESAYPNVRKRETVIKAELEREEANFL 362

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL+ ++  + K    I++G+ AF LYDT+G PL++ Q+I     L  +D   
Sbjct: 363 KTLDRGEKLLEEIIQQVKKQGQTIISGESAFTLYDTYGFPLELTQEIAEENNLT-VDEDD 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +++Q  RA+A    +   T +     L E   AT+FIGY                 
Sbjct: 422 FNVEMQKQVERAKAAHETIDL-TVQGSLDKLAEHIHATEFIGYS---------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+ ++  G + EEA +G +V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 465 -------QATATAKVEVLLVDGVVQEEAEAGTEVQIVLDKTPFYAESGGQIGDRGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           GI +Q+ DV+K+++  FVH   +ERG LR   S+   ID   RR+   NH+ATHLL  AL
Sbjct: 518 GIVVQVEDVKKESD-FFVHFGRIERGTLRVGDSVTAQIDRAGRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            TI+   +SQ GS ++ D LRFD    + +T+ E++ +E+ +N  IA+       ++   
Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTAEEIQQVEEQINTWIAEAHSAKIEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFPG-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  +      
Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + D   +   +  VD + LKS  + L +KI +G ++L  + +
Sbjct: 752 KGQLAIAKSDSLLQTADTLGDHKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGGG GRP++AQ+GG + +K   A+  
Sbjct: 812 ADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGGG-GRPNLAQAGGRDASKLPTALEQ 870

Query: 892 VASFLK 897
             S LK
Sbjct: 871 AQSELK 876


>gi|189499310|ref|YP_001958780.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|189494751|gb|ACE03299.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 886

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/923 (36%), Positives = 516/923 (55%), Gaps = 68/923 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR +FL++F+K  H ++ S+ +IP  DPTL+FTN+GM  FK++F  +    Y  
Sbjct: 1   MKS-SDIRQSFLDYFEKKEHTIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT+ + L
Sbjct: 60  AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTEVWSL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY +D+E+ ++WK  + +  D I++    DNFW M ETGPCGPCSEI  D  
Sbjct: 120 PKERLYATVYQDDDESLEIWKTATDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLT 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           + +  G    + +  R IE+WNLVF+Q+ ++  +    LPK  +DTGMG ER+  VLQ K
Sbjct: 180 DDL-SGRELVNADDHRVIELWNLVFIQYNRKADRSLEPLPKKHVDTGMGFERITAVLQSK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            +NYD D+F  L  A    TG+ Y    +G   +  RVI DH R+ +F I DG +P NEG
Sbjct: 239 GSNYDTDIFAPLFDAITAHTGVAYTATLDGERDMAMRVIADHARTLTFAITDGAVPGNEG 298

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YAR L   +P++  L+  +   MG+ +PEL + +  +E+ ++SE+E
Sbjct: 299 RGYVLRRILRRAVRYARKLDCNQPVLYRLVGVIADTMGAVFPELKKQQATVEKIVKSEEE 358

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TL RG+ +   + + L   K++ ++G+ AF+LYDT+G PLD+ + +    GL G+D
Sbjct: 359 SFLVTLGRGIEIFGEIAAALKASKEKSISGEDAFRLYDTYGFPLDLTRLMASEEGL-GVD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQ+ RAR         T ++  +   E+ G T F+GY+ L           
Sbjct: 418 EKGFGACMKEQKERARKDRKQKQQITGDEGQWQWFEQKGPTVFLGYETLET--------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                  + +I+   ++G ++++V DQTPFYAE+GGQ GD G  
Sbjct: 469 -----------------------EAQIIGVRIAGSQMQLVLDQTPFYAESGGQTGDRGRI 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIV-----------ERGILRTEMSLVLTIDYQNRRQL 583
            G+     + D +K  + I      V           E       + +   +D + R   
Sbjct: 506 EGENYIFDVIDTRKDGDVIVHVAGTVYDRATGGEVTPESIAFSQAVQVQAQVDKETREAT 565

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG HV Q GS + PD LRFD +H + +++ EL+++E  VN+ I
Sbjct: 566 ERNHTATHLLHAALRKVLGEHVQQKGSLVGPDRLRFDFSHFEKVSAGELEAVEAEVNERI 625

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +   +V    +  E A+  GA A  G KY DRVRVV V        S  LCGGTHVS+ 
Sbjct: 626 REAGALVKHADIPYEAALEKGALAFFGDKYADRVRVVEVPG-----VSMELCGGTHVSNV 680

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVE 761
           G+I L  I+SESSI +GIRRIEA++G+ A   L G  ++L+ +   L+   + +V  RV+
Sbjct: 681 GQIGLFKIMSESSIASGIRRIEAMSGKAAEEVLWGDYQELQQVRQLLRTGGEESVAARVQ 740

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDAL 816
           E+ EE + L       KL L ++       +   VN     + + D   +  L+S+   L
Sbjct: 741 ELLEERKILDKKLQDMKLSLLLDKAIGELEQADTVNGCRIFVMKYDDSGADTLRSLGQFL 800

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++KI  G+ +L G  ++ K +++    ++ +     NA +L + +A ++ GGGG G+P  
Sbjct: 801 REKIGRGVGLLAG-EEQGKVTLVGFAGDEAIRECGLNAGELVKKAAAMVQGGGG-GKPGF 858

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG N     +++      ++
Sbjct: 859 ATAGGKNPAGIPESMKVFEETVR 881


>gi|313890705|ref|ZP_07824330.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120806|gb|EFR43920.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 873

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/920 (35%), Positives = 489/920 (53%), Gaps = 70/920 (7%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKTLTSAEIRQMWLDFWKSKGHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            FD  + +LY+T Y  D +++  W  + G+    +I +   +NFW +   GP GP +EIF
Sbjct: 117 WFDFPKDKLYMTYYPADTDSYNRWIAL-GVDPSHLIPL--EENFWEIGA-GPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           FD+G        G        E +RYIEIWN+V  QF    K    E   LP  +IDTG 
Sbjct: 173 FDRGPAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPKVPRSEYKELPSKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+  V+Q    N++ DLF  +IQ  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIQEVEKLSGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA+ + R LG TE  +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMTSYYPEILEKRDFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++ E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++ 
Sbjct: 353 EKIIKREEETFARTIDAGSGHLDQLLTQLKEAGKDTLEGKDIFKLYDTYGFPIELTEEMA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G   +D   F  A++EQ+ RARA  +  GS   +    +L      ++F   +    
Sbjct: 413 EDAGYR-VDHEGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLAGIVEPSEFSYQE---- 465

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 + + +  I+   E  E    GQ   +VFD+TPFYAE G
Sbjct: 466 --------------------ETLDAKLSVIIVDNERSEMVSEGQ-ALLVFDRTPFYAEMG 504

Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+ D G        +  ++ DVQK   G  +H   V    L       L ID++ R  +
Sbjct: 505 GQVADHGLIKNAAGDVLAKVVDVQKAPNGQALHTVEVL-ASLSINAIYTLDIDHKRRYAV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN  I
Sbjct: 564 EKNHTATHLLHAALHKVIGQHATQAGSLNEETFLRFDFTHFEAVTAEELRRIEEEVNQQI 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              L V T   + + A + GA AL G KY   VRVV++     G +S+ LCGGTH+ +T 
Sbjct: 624 WNALSVTTVETDVDTAKSMGAMALFGEKYGKLVRVVTI-----GDYSAELCGGTHLGNTS 678

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762
           EI L  IV E  I +G RRI A+TGQ+A      +++ LK +A+ LK  Q   V  +V  
Sbjct: 679 EIGLFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVAS 738

Query: 763 IWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           + E+ R LQ  +   K K            +   N  ++I +EV   D+  L++  D  +
Sbjct: 739 LSEQVRDLQKENHELKEKAAAAQAGDLFKDVKKANGHTYIATEVAVADAGALRTFADNWK 798

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +K  S +++LV    EK   ++    +      +A +L +  A ++  G GGG+P MA +
Sbjct: 799 QKDYSDVLVLVAAIGEKVNVLVASRDKA----VHAGNLIKSLAPIVS-GRGGGKPDMAMA 853

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG +  +    +  V   LK
Sbjct: 854 GGSDAGQIQALLLAVPELLK 873


>gi|291460300|ref|ZP_06599690.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417055|gb|EFE90774.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 882

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/903 (37%), Positives = 502/903 (55%), Gaps = 38/903 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FLEFF++  H  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT
Sbjct: 6   VNELRRMFLEFFEEKQHLRMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFKE AI  AW+ LT+   +   
Sbjct: 66  CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKEEAIHWAWEFLTERVGIPAD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY +VY +D+EAF++WK+  G++ ++I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 122 RLYPSVYLDDDEAFRIWKEEIGIAPERIYRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKY 180

Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       EG+R++E+WN+VF QF          L   +IDTGMGLER+A V Q+  +
Sbjct: 181 GTGPEDVMGGEGDRFMEVWNIVFSQFNNDGHGVYTELEHKNIDTGMGLERLAVVCQDVLS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D  + +++    +   +YE +    V+ R+I DH++S +F+ +DGILP+NEGRGYV
Sbjct: 241 LFDVDTNRAMMEEIGALAHCRYEEDPEKDVSFRIIADHVKSCTFMASDGILPSNEGRGYV 300

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            RR++RRA  + ++LG     M  L   +       YPEL + + +I   +  E+ERF  
Sbjct: 301 FRRLLRRAARHGKILGLKGRFMAALSQKVIELSKDGYPELEEKREMILRVIEQEEERFQN 360

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           T+D+GL +L  +   + K  +++L+G+ AF+LYDT G P D+ ++IL  +G   ID   F
Sbjct: 361 TIDKGLEILSELQEEMKKRGEKVLSGEDAFRLYDTFGFPPDLTREILSDKG-QSIDEEGF 419

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A+  QR  ARA          + I+  L  K   T+F GY  L     +    ++  +
Sbjct: 420 QKAMRLQRETARAARKSTNYMGRDDIYQRLDPKL-RTEFTGYHSLTERSKITALVRLAPE 478

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                              + EIV+    G++  V+ ++TPFYA  GGQ+GDTG  +G  
Sbjct: 479 D-----------------GEDEIVDVLTDGERGAVLTERTPFYATMGGQVGDTGSILGGE 521

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               + +      G       +  G+L+      L +D   R + + NH+ATHLLH AL 
Sbjct: 522 GDFTVEETIHLQGGKIAEIGTMRSGMLKAGEEAELRVDPIRRERTARNHTATHLLHEALR 581

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV Q G+      LRFD TH + +T  E++ +E+ VN  I++  PV T  M+ ED
Sbjct: 582 EVLGNHVEQAGAYYDDKRLRFDFTHFEALTEEEIRKVEEIVNREISKLTPVKTEEMSLED 641

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL G KY DRVRVVSV     G  S  LCGGTHV++T EI  L I+SE  I +
Sbjct: 642 AKKSGAVALFGEKYGDRVRVVSV-----GDFSKELCGGTHVANTAEIQGLKILSEQGIAS 696

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+T +   ++   ++E L+  A  LK    ++  R+  + +E +  +      +
Sbjct: 697 GVRRIEALTSENLMAYFSEEEELLREAAKLLKTEPKHLSERILALEKELKDSRAEAESLR 756

Query: 779 LQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            +L  E   +LS  +I+ V+F++  +   D   L+ + D L+++     I+L      K 
Sbjct: 757 AKLAKESMGELSVEEISGVSFLAKALEGADGNSLRELGDQLKERYPDAFIVLASDKGGKP 816

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +       +    +A  L R  A +LGGGGG GRP+MAQ+GG + ++  +A+      
Sbjct: 817 CLMATAADSAVKKGADAGALIRAVAPILGGGGG-GRPNMAQAGGKDTSRIPEALEKAREI 875

Query: 896 LKK 898
            K+
Sbjct: 876 AKE 878


>gi|184154997|ref|YP_001843337.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227514535|ref|ZP_03944584.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
 gi|183226341|dbj|BAG26857.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956]
 gi|227087092|gb|EEI22404.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931]
          Length = 882

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 498/915 (54%), Gaps = 63/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D ++     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +   P   P      E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+  E  +  K  G    + V  ++I DH+RS +F I DG LP
Sbjct: 240 IFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF  TL+ GL LL+ V+    +   + ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR A  +  G G    +W +  ++   ++++GY  L      
Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGYTDLVVDN-- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V  +   G+  ++A  GQ V+V+FDQTPFYAE GGQ+ 
Sbjct: 474 --------------------AKVIGLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQVA 513

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG  I +  ++   + DVQ       +H   +    ++      L +D     ++  NH
Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELT-APIKKGARYKLVVDRARHLKIEKNH 572

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I + +
Sbjct: 573 TATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEI 632

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI L
Sbjct: 633 PVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGL 687

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV+Q   V  RV E+ ++
Sbjct: 688 FKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQ 747

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++    +   + +L  +          + A    ++  +      +L+ + D  ++K  
Sbjct: 748 LKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDY 807

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L   + + KA++L+ V + L     A DL +  A  + GG GGGRP +AQ+GG N
Sbjct: 808 SDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKN 865

Query: 882 GNKADQAIAGVASFL 896
                +A+   + F+
Sbjct: 866 PAGISEALKLASQFM 880


>gi|19746355|ref|NP_607491.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|24418690|sp|Q8P0E6|SYA_STRP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19748550|gb|AAL97990.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
          Length = 872

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/913 (34%), Positives = 487/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI   ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIGWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+  F I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALLFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKERGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R  Q  +A+ K +              +   V F++  +   D+  L++  D  ++K  
Sbjct: 743 LRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|300088455|ref|YP_003758977.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528188|gb|ADJ26656.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 856

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/903 (36%), Positives = 493/903 (54%), Gaps = 56/903 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +RT FL++F + GH+++PS+SLIP  DPTL+ T +GMV FK  F G+EKP    +
Sbjct: 3   MTGDQLRTLFLDYFAEKGHKVMPSASLIPHGDPTLLLTTAGMVQFKPYFLGREKPPATRL 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC R      D+D VG    H TFFEMLGNFS G YFK+ AI LAW+ +T+   L 
Sbjct: 63  TSTQKCFRT----TDIDAVG-DASHLTFFEMLGNFSVGDYFKKEAIDLAWEFVTERLGLP 117

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
             RL++TV+ +D+EA + W+   GL A++I+R+   DNFW    ++GPCGPCSEI +D G
Sbjct: 118 MERLWVTVFLDDDEAIRFWRDK-GLPAERIVRLGEKDNFWGPAGDSGPCGPCSEIHYDFG 176

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  G +    R+ EIWNLVFMQF Q     R  LP+ +IDTGMGLER++ ++Q
Sbjct: 177 EAAGCGKPDCGPACSCGRFCEIWNLVFMQFNQDTAGTRTPLPRPNIDTGMGLERLSAIMQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
              + Y  D F +L+    +V+G +Y  +       R++ +H R  +FLIADG++P+NE 
Sbjct: 237 GVPSVYQTDRFDYLLDRVAEVSGREYGRDAETDRAMRIVAEHSRGITFLIADGVIPSNES 296

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RR   + R+LG  +P M+ L+ A+   M  AYPEL   +  I E +  E+ 
Sbjct: 297 RGYVLRRLLRRTALFGRMLGLDQPFMVPLVEAVIERMSPAYPELTGRREFIIELVAREES 356

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF +TL  G+ LL+ +++  G+  ++ G+ AF+LYDT+G PLD+  +I   +G  G+D  
Sbjct: 357 RFAETLLTGMQLLEDMMAGAGEGRMITGEQAFRLYDTYGFPLDLTMEIASGKGF-GVDEA 415

Query: 417 SFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            F++ +  QR +ARA    G            L   +  T F GYD L            
Sbjct: 416 GFDREMGRQREKARAGARFGTDKAVP------LDHTFQHTCFTGYDTLSQY--------- 460

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                           +  I++     +    G+   +V D+T FYAE GGQ GD G   
Sbjct: 461 --------------GTIDGIIRNNAQTDVISEGEHGGLVLDKTAFYAEMGGQAGDIGRIT 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++T     + G+ +H   V RG  R     +  +D   R   + NH+ATHLL  
Sbjct: 507 AGDSVFEVTGTVLLSPGVTIHQGYVARGAFRIGDEALTAVDPTTRYDTARNHTATHLLQA 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG H+ Q GS + PD LRFD +H K +T  EL  +E  VN+ I +N PV      
Sbjct: 567 ALIEVLGEHIQQRGSVVAPDRLRFDFSHLKAVTPEELIRVEAIVNERIRENHPVTAAETG 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             DA+ SG  AL G KY + VRV+S+  +     S+ LCGGTH+ +TGEI    I+SESS
Sbjct: 627 YRDALKSGVTALFGEKYGETVRVLSIGSDR--RVSAELCGGTHIRATGEIGYFKIISESS 684

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG+RRIEA+TG+ A + L  Q    +     L+    +         E     +L   
Sbjct: 685 VGAGLRRIEAVTGRGAEAWLSEQFTNSREKLERLQTELDD---------ERRSAAELKRE 735

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             + +          I     ++  + + D + L+ + D L+ ++ S +I+L  +  + K
Sbjct: 736 LARQRALSLTAGARDIDGGKLLAVEVPDTDMETLRDMADELRGRLGSAVIVLASVQGD-K 794

Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
              L  VT+DL+ R ++A ++ +  +++ GGGGG G+PH+AQ GG + ++  +A+A V  
Sbjct: 795 PVFLAAVTDDLVARGYHAGNIIKRLSQIAGGGGG-GKPHLAQGGGRDKSRLAEALAAVNE 853

Query: 895 FLK 897
           F++
Sbjct: 854 FIR 856


>gi|227524340|ref|ZP_03954389.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088571|gb|EEI23883.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 887

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 503/919 (54%), Gaps = 65/919 (7%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +S   IR  FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 8   MKTLSSSQIRQMFLDFFQEKGHAIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 68  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPK 123

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LY+TVY +D +A K W+ + G+S D II I   DNFW + + GP GP SEIF
Sbjct: 124 WFGWDKDKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 179

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G       P   E     E +R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 180 YDRGADFDELAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 239

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E  +  K  G    + V  R+I DH R+ +  I D
Sbjct: 240 RVVSIFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGD 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG     +  L P +   + S YP++++ +  IE
Sbjct: 300 GALPSNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPKVLEQREYIE 359

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL LL  V++         ++G  AFKLYDT+G P ++ ++   
Sbjct: 360 KVIRSEEDRFNETLADGLKLLHDVIADTKAESKNEIDGPTAFKLYDTYGFPYELTKEEAS 419

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + +Q+ RAR    G  S   ++    L +    ++++GYD L   
Sbjct: 420 EVGL-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDL--LVKVKEDSEYVGYDTLDVK 476

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V E+ +   +EV+FD+TPFYAE GG
Sbjct: 477 D----------------------AKLIDIVENEKLVSESKA-DTIEVIFDKTPFYAEMGG 513

Query: 527 QLGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G  + +       + DVQ    G  +H    +  +++      L +D     ++ 
Sbjct: 514 QVADRGVILDENGDKVADVIDVQHAPNGQNIHTIKTQESLVK-GQQYHLVVDKLFHSRVE 572

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  +L  +LG H  Q GS + P  LRFD  H   +T  +L+ +E  VN  I 
Sbjct: 573 KNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMVNKQIF 632

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV +T +
Sbjct: 633 KEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVKNTRD 687

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IVSES + AGIRRIEA+T + A   L  Q  +LK ++  LKV+Q  +V  RVE++
Sbjct: 688 IGLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPTRVEQL 747

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E + L+      + +L  +          +      ++ II +    +L+ + D  + 
Sbjct: 748 QDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLTDTWRS 807

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L G    +KA++++ V+++ + D   A DL +  A  + GG GGGRP+MAQ+
Sbjct: 808 KGLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNIKGG-GGGRPNMAQA 865

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +  D+A+     +L
Sbjct: 866 GGKDPSGLDKAMKAAIEWL 884


>gi|90962086|ref|YP_536002.1| alanyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|122448814|sp|Q1WT32|SYA_LACS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|90821280|gb|ABD99919.1| Alanyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 880

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/917 (36%), Positives = 516/917 (56%), Gaps = 62/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  + FD+
Sbjct: 65  SSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPEWFDM 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYEA--EDNFWDIGE-GPSGPDSEIFFDRG 176

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +   P   P      E ERY+EIWN+VF +F  +       LP  +IDTGMGLER+ +
Sbjct: 177 QEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292
           V Q    N++ DLF  +I+ + ++  G KY  N    V+ +VI DH R+ +F I DG LP
Sbjct: 237 VFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    IE+ ++
Sbjct: 297 SNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIEKVIK 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++     GL
Sbjct: 357 MEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYANDEGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   FN+ +E+Q++RARA      S   +     L +   +++++GY  L+      
Sbjct: 417 -DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTSSEYVGYHELK------ 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             + ++K I+   E+V+   +  + +V+FD+TPFYAE GGQ+ D
Sbjct: 468 -----------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G        +  ++ DVQ    G  +H     + + R E +  L +D     ++  NH+
Sbjct: 511 KGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTR-ENTYSLEVDVAFHNKVKKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN  I +N+ 
Sbjct: 570 ATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWENIQ 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T + ++E A   GA AL G KY D VRVV V     G +S   CGGTHV++T EI L 
Sbjct: 630 VETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK V    V  ++E++ E+ 
Sbjct: 685 KIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQEQV 744

Query: 768 R--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQS 822
           +  + Q    + K            I D+N  + I  +V+     +L+ + D  ++K  S
Sbjct: 745 KLLEQQKQALEDKFASQQAGDIFKNIKDINGKTLIAGQVNVSGMSQLRQLADQWKEKQLS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L   + + K +++  ++ D +   + A DL +  A  +GGGGG GRP +AQ+GG  
Sbjct: 805 DVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVGGGGG-GRPDLAQAGGKK 863

Query: 882 GNKADQAIAGVASFLKK 898
                +A+     +L K
Sbjct: 864 PEGIQEALKAAEDWLNK 880


>gi|160947669|ref|ZP_02094836.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270]
 gi|158446803|gb|EDP23798.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270]
          Length = 868

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/904 (37%), Positives = 522/904 (57%), Gaps = 54/904 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  +LEFF+  GH  L S  LIP ND +L+  N+GM P K+ FTG +K      T+
Sbjct: 6   LNEIREEYLEFFESKGHLRLKSYPLIPNNDKSLLLINAGMAPLKDYFTGVKKMSKNRATS 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R      D+DNVG+T RH TFFEMLGNFSFG YFK  AI  AW+ LT++ ++D+ 
Sbjct: 66  SQKCIRTA----DIDNVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWEFLTEKLEMDKN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L +TVY+ED+EA+ +W+   GLSA+KI R+   DNFW + E GPCGPCSEI +D+GE  
Sbjct: 122 LLSVTVYEEDDEAYDIWRNEVGLSAEKIQRLGKEDNFWEL-EVGPCGPCSEIMYDRGEKY 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                  +   +R++EIWNLVF QF +        L   +IDTGMGLER+  VL+EK N 
Sbjct: 181 -------TNPDDRFMEIWNLVFTQFNKDKDGNYHRLEHPNIDTGMGLERLTLVLEEKDNI 233

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++I L   +I+  E+++G+KY+ N    ++ RVI DH R+ +FLI DG++P+NE RGYVL
Sbjct: 234 FEIGLVDTIIKKIEEISGVKYKSNEISDISIRVIADHARAMTFLIYDGVIPSNEQRGYVL 293

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA  + +LLG  +  ++ +   +     + YPEL++    I + L +E+ +F +T
Sbjct: 294 RRLIRRAARHGKLLGIKDNFLVDVSKVVMEAYNTEYPELLEDSERIFKILNAEESKFQET 353

Query: 362 LDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +++GL +L+  +        +IL+GD AFKLYDT+G PLD+ ++IL  + +  +D  +FN
Sbjct: 354 IEQGLGILNSYIEDEKSKNSKILSGDKAFKLYDTYGFPLDLTKEILEEQKMT-VDEEAFN 412

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E+Q+ RAR       +G +EK      +    T+F+GY                   
Sbjct: 413 KNMEKQKIRARQGRNVSSAGWSEK-NTDYLKSLETTEFLGY------------------- 452

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                 N     V  + +    V     G K  +V D+T FY E GGQ+GD G   G   
Sbjct: 453 ----TENVCIGKVIKLFKDELEVSILNQGDKALLVSDKTVFYGEGGGQVGDVGIIEGKHC 508

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L++ D +K       H   V  G ++    L+  ID  NRR +  NHSATHLLH AL  
Sbjct: 509 KLKVLDTKKNKNNGIFHSVEVIEGSVKLNDELIFKIDVNNRRDIMKNHSATHLLHQALIE 568

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+H++Q GS +  + LRFD+TH + I+  +LK +E  VND IA NL  + + +  E++
Sbjct: 569 VLGNHINQAGSLVDANKLRFDITHFEAISPEDLKRVEQIVNDKIALNLETIIKEVPLEES 628

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L   KY D VRVVS      G  S  LCGGTHV +  EI +  I+SESS+ AG
Sbjct: 629 SKMGAIGLFEDKYKDIVRVVSF-----GGWSIELCGGTHVKNVSEIQMFKIISESSVAAG 683

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG++   +L   + +++ +++ LK  +  +V +   + +E + L+    + KL
Sbjct: 684 VRRIEAITGRKVYDYLKKTENQIEEVSNVLKCKKAEMVSKAVSMVDEIKSLEKELKEIKL 743

Query: 780 QLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           ++ +  L        +I  ++F++  +   +  +L+ ++D L+ K+ + +I+   + +  
Sbjct: 744 EITLSSLDSFIAEKKEINGISFIAKKVEFENQNDLRDLIDKLRDKLGTSVIVFANVYQ-G 802

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K +  + V++DL   + NA ++ R  AK++ GG GGGRP +A +GG + +K D A+    
Sbjct: 803 KLTFTVGVSKDLNARKINAGNIVREIAKLV-GGNGGGRPDIASAGGKDLDKVDFALKQAE 861

Query: 894 SFLK 897
             LK
Sbjct: 862 EILK 865


>gi|161502129|ref|YP_001569241.1| hypothetical protein SARI_00146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863476|gb|ABX20099.1| hypothetical protein SARI_00146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 784

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/820 (41%), Positives = 493/820 (60%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT    F L + RL++TVY+ D+EA+ +W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYGIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NY+IDLF+ LI+A  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRTLIEAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L + + 
Sbjct: 239 FYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKL-QGDT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERDIK-VDEAGFETAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVNGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H   + 
Sbjct: 388 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVGFTFAVNDTQKYGQAI-GHLGKLS 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+    +   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LRFD 
Sbjct: 447 AGALKVGDVVQADVDEARRARIRLNHSATHLMHAALRQVLGAHVAQKGSLVSDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +  +E++ +ED VN  I +NLP+ T IM  E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPSEIREVEDLVNAQIRRNLPIETHIMELEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH   TG+I L  I+SES   AG+RRIEA+TG+ A + +  Q ++
Sbjct: 567 -----GDFSTELCGGTHARRTGDIGLFRIISESGTAAGVRRIEAVTGEGAMATVHAQSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNF 796
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          +  V  
Sbjct: 622 LNDIAHLLKGDSQNLGDKVRAVLERSRQLEKELQQLKDQAAAQESASLSSKAVDLNGVKL 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   ++ V+ K L++++D L+ ++ S +I+L  +  E K S++  V++D+  R  A +L 
Sbjct: 682 LVSELAGVEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTGRVKAGELI 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVQDWV 779


>gi|300362251|ref|ZP_07058427.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03]
 gi|300353242|gb|EFJ69114.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03]
          Length = 882

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/918 (36%), Positives = 508/918 (55%), Gaps = 65/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F++ ++ Q+ RAR     L S  ++ +  +L      ++F           
Sbjct: 416 GLK-VDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ+
Sbjct: 462 ------------EYGTLEEKHAKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     L  ++TDVQ       +H   +    L      +L +D + RR L  N
Sbjct: 509 ADHGEILNQNGELVARVTDVQHAPNDQNLHFVDII-LPLEKGQEYILKVDQKRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I + 
Sbjct: 568 HTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNEKIWEE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I 
Sbjct: 628 IPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +V  ++  + E
Sbjct: 683 MLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKISSLEE 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + R  Q    + K Q+N        + +  V  ++ I ++ D     +L+ + D  +   
Sbjct: 743 DLRASQKEAEQLKAQINKAKAGDLFNDVKQVKDLTVIAAQADVEGMNDLRELADNWKSSA 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L      K   V+ +  + +     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 803 KSDVLVLAAEVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFLKK 898
           N      AIA V   +++
Sbjct: 862 NPAGLKDAIAEVLQEVEE 879


>gi|313683350|ref|YP_004061088.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313156210|gb|ADR34888.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 851

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/895 (39%), Positives = 520/895 (58%), Gaps = 52/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            +R  FL FF+   HE +PSS L+P +D TL+FTN+GMVPFK+IFTG    P     T+ 
Sbjct: 3   DVREAFLAFFESKQHERVPSSPLVP-DDATLLFTNAGMVPFKSIFTGDIPIPANPRATSA 61

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L + +
Sbjct: 62  QTCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAHAWEFVTEVMKLPKEK 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA ++WKK   ++AD+I+R+   DNFW M +TGPCGPCSEIF DQG E  
Sbjct: 122 LWVTVHESDDEAEEIWKK--HIAADRIMRLGDKDNFWQMGDTGPCGPCSEIFIDQGAEHF 179

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+  K E   LPK SIDTGMGLER   VL+  T+N
Sbjct: 180 NGPEDYMGGDGDRFLEIWNLVFMQYERNAKGELKPLPKPSIDTGMGLERATAVLEGVTSN 239

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  +I+  E + G  Y      ++RVI DH+R+ +FL+A G   +NEGRGYVLRR
Sbjct: 240 YDSTLFMPIIKKVEALIGKPYVYATGASYRVIADHIRTVTFLLAQGTNFSNEGRGYVLRR 299

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+T+P M  +   +   MG  YP +++   +++E +  E+ERF KT+ 
Sbjct: 300 ILRRAVRHGYLLGFTKPFMFEVADTVAELMGKQYPYIVEKLAVLKEQIMLEEERFFKTIA 359

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L +       +G+VAFKLYDT G PLD+ +D+L  + L+ +D+ +F   + 
Sbjct: 360 SGIELFNEELKNTK--GTFSGEVAFKLYDTFGFPLDLTEDMLREKNLS-LDVETFETLMS 416

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RA+A   G G    E  + +L E +G   FIGY   +    ++             
Sbjct: 417 EQRKRAKAAWKGSGDAHVEGDFKTLLETFGVNTFIGYAYTKAPVKIQ------------- 463

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                      + +  E V++  + QK  V+ ++TPFYAE+GGQ GDTG       +  +
Sbjct: 464 ---------ALLGENFERVDQLHAHQKGWVLLEETPFYAESGGQCGDTGTL---DDKATV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  KK  G+ + H I  +  L    ++   +D + R +++ +HSATHLLH AL  +LG 
Sbjct: 512 LDT-KKFHGLNLSH-IETKATLSVGDTVNALVDPE-RNEIAKHHSATHLLHAALYEVLGE 568

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +  + LRFD +H K ++  E+  +E+ VN  +   L  +TR M+ +DA  SG
Sbjct: 569 HISQAGSLVEHNRLRFDFSHPKAMSHEEIALVEERVNYHVFHALEGMTREMSIDDAKKSG 628

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A  G KY D VRVV+      G  S   CGG HV +T  I    IV ES + AG+RRI
Sbjct: 629 AKAQFGEKYGDTVRVVNF-----GTASIEFCGGVHVDNTATIGTFVIVKESGVSAGVRRI 683

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A +    Q   L+ + + +K    +V+  +E + E+ + L+  H    L  + 
Sbjct: 684 EAVCGNAAYNLFKQQRHLLEEVEASVKNR--DVLAGIERLKEQVKTLK--HEMSALASSA 739

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           ++     +  +   + +++E+ + ++K  +D L+ +  S  ++L  I  +K   +L    
Sbjct: 740 KEELA--VTMIGSTAVVVAELGAGDIKERIDELKNQHDSVAVLLFQIKDDK--VLLAAGA 795

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++      A D  +  A +LGGGGG GRP  AQ+GG + +K  +A     +++ K
Sbjct: 796 KNTP--LKAGDWIKTIAPILGGGGG-GRPDFAQAGGKDASKLGEAKDAALAYVTK 847


>gi|205371826|sp|Q5N4B5|SYA_SYNP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/905 (38%), Positives = 512/905 (56%), Gaps = 50/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR TFL+FF+  GH  LPS+SLIP  DPT++ T +GM+PFK IF GQ+       T
Sbjct: 7   SGDQIRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+L+T+ F +  
Sbjct: 66  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 ERLAVSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE++NLVFMQ+ +        L K +IDTGMGLERMA VLQ   N
Sbjct: 182 L-GNDGLDLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQA   +    Y   +    V+ +VI DHLR+ + LIADG+  +N GRGY
Sbjct: 241 NYETDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G   P    +       M + YP L + +  I+  L  E++RF 
Sbjct: 301 VLRRLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  L           + + G+ AF LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 361 ETLERGEKL--LAELLAAATDQIRGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+  QR R++A    +   T +     L E+   ++F+GY                   
Sbjct: 418 AAMAAQRQRSQAAHETIDL-TVQGSLDRLAEQIHPSEFVGYG------------------ 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    ++ V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G   G+ +
Sbjct: 459 -----DAVATAKVTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK++ G FVH+  +ERG+L+   S+   ID   RR+   NH+ATHLL  AL  
Sbjct: 514 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   +SQ GS +  D LRFD    + +T  EL+ IED +N  IA+    V  +M    A
Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV++T EI L  I+SE+ + +G
Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVPG-----VSMELCGGTHVANTAEIGLFKIISEAGVASG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEA+ G     +L  +D  ++ L+   K     +  RV  + EE +  + QL   K 
Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747

Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           +L +   D    +   + D   +   ++ VD+  L++  + LQ+K+   G ++L    +E
Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++      ++ +   A       AK+ GGGGG GRP++AQ+GG + +K  +AIA  
Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGG-GRPNLAQAGGRDASKLPEAIAAA 866

Query: 893 ASFLK 897
              LK
Sbjct: 867 LDQLK 871


>gi|221195805|ref|ZP_03568858.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221184279|gb|EEE16673.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 882

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/908 (39%), Positives = 519/908 (57%), Gaps = 47/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL FF+  G ++ PSSSL+P  DP+L+  N+GM  FK  + G +       
Sbjct: 7   MTTAEIRKNFLAFFESKGCKVYPSSSLVPS-DPSLLLANAGMNQFKEYYQGIKTMKEIGA 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND+DN+G  NRH +FFEMLGNFSFGGY K  A   A + ++  +   
Sbjct: 66  TSCQKCLRT----NDIDNIG-DNRHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLG 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TV+ +D+EA ++W  + G++ D I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 121 LPLDRLYFTVFTDDDEAAEIWHSL-GVAEDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 179

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  PG  ++G+RY+E WNLVF Q+++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 180 GPEFSGEKPG--DDGDRYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
             +NY+ D+   LI+  E+++G +Y+  N     + R++ DH R+ SF+I DGILP NEG
Sbjct: 238 AGSNYEGDIMTSLIELGEKLSGKRYQAGNEEVDRSLRILADHSRAVSFMIGDGILPGNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           R Y+LRR++R A+ + RL+G  +  M      +   +G AY EL++ ++LIE  L +E+E
Sbjct: 298 RSYILRRLLRHAVYHGRLVGIQKTFMAEYANEVVRLLGDAYSELVEKRVLIEGILTAEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RFG TL+ G   L+  L  L  DE L+GDVAF L+DT+G P+D+ ++I    G   ++  
Sbjct: 358 RFGTTLEAGESKLEDELKKLTGDECLSGDVAFLLHDTYGFPIDLTREIAARAG-HAVNEA 416

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            F+ A+ EQ+ RARA +     G  + +W +L ++   T F GY+               
Sbjct: 417 QFDAAMAEQKQRARASANRDAWGKAQSVWVALSDRLDETVFDGYNHNELEGCR------- 469

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          V A+V+ G+ V+ A  G +VEVV D+TPFYAE GGQ+GDTG    
Sbjct: 470 ---------------VVALVKGGQEVDCAAVGDEVEVVLDRTPFYAEMGGQVGDTGTLSA 514

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           D + +Q++D + K   +  H   VE G L T   L+  ID   R  +  NH+ATHLL  A
Sbjct: 515 DNLFVQVSDTKHKEGNLIAHVGQVEEGELHTGDVLIAVIDTGRRELIRRNHTATHLLDAA 574

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  ILGSHV+Q GS + PD LRFD TH + +TS EL  IE  +N  I    P+VT+IMN 
Sbjct: 575 LKLILGSHVNQAGSLVAPDRLRFDFTHFEALTSDELARIEGMINAEIFAAKPIVTQIMNI 634

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           ++A A+GA AL G KY D VRVVSV  ED    S  LCGGTH  +T E+ L  IVSESS+
Sbjct: 635 DEAKAAGAVALFGEKYGDVVRVVSVGEEDH-PFSRELCGGTHAKNTAELGLFKIVSESSV 693

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            A  RRIEA+T   A S++  +  +L  +A  LKV    V  RVE++  + R+       
Sbjct: 694 GANSRRIEAVTSMGAISYVDERLVQLDMVAHGLKVRPEAVAARVEQLQSDLREAHKKAEA 753

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII--MLVG 829
             +      +     + H++     +   + ++  K+L+SV D ++       +  ++  
Sbjct: 754 ATVGAGSNRIAEALHNAHELDGYRCVITRLDDLSGKDLRSVWDGIRDASDGHPVACVIAS 813

Query: 830 ISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           ++ +KK ++L   T+  +   F+A  L +  A ++GG GG GRP+MAQ+GG + +  D A
Sbjct: 814 VTPDKKVALLAGATDTAVAAGFSAGTLIKDIAGLVGGRGG-GRPNMAQAGGVDISGIDVA 872

Query: 889 IAGVASFL 896
           +      L
Sbjct: 873 LEAAKQKL 880


>gi|301300923|ref|ZP_07207095.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851522|gb|EFK79234.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 880

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/917 (36%), Positives = 515/917 (56%), Gaps = 62/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  + FD+
Sbjct: 65  SSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPEWFDM 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYEA--EDNFWDIGE-GPSGPDSEIFFDRG 176

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +   P   P      E ERY+EIWN+VF +F  +       LP  +IDTGMGLER+ +
Sbjct: 177 QEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLERVVS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292
           V Q    N++ DLF  +I+ + ++  G KY  N    V+ +VI DH R+ +F I DG LP
Sbjct: 237 VFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAIGDGALP 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++    IE+ ++
Sbjct: 297 SNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEFIEKIIK 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ ++     GL
Sbjct: 357 MEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEYANDEGL 416

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   FN+ +E+Q++RARA      S   +     L +    ++++GY  L+      
Sbjct: 417 -DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHELK------ 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             + ++K I+   E+V+   +  + +V+FD+TPFYAE GGQ+ D
Sbjct: 468 -----------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G        +  ++ DVQ    G  +H     + + R E +  L +D     ++  NH+
Sbjct: 511 KGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTR-ENTYSLEVDVAFHNKVKKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN  I +N+ 
Sbjct: 570 ATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVNAKIWENIQ 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T + ++E A   GA AL G KY D VRVV V     G +S   CGGTHV++T EI L 
Sbjct: 630 VETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGTHVANTNEIGLF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEY 767
            IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK V    V  ++E++ E+ 
Sbjct: 685 KIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEVPRKIEQLQEQV 744

Query: 768 R--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQS 822
           +  + Q    + K            + ++N  + I  +V+     +L+ + D  ++K  S
Sbjct: 745 KLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQLRQLADQWKEKQLS 804

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            +++L   + + K +++  ++ D +   + A DL +  A  +GGGGG GRP +AQ+GG  
Sbjct: 805 DVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVGGGGG-GRPDLAQAGGKK 863

Query: 882 GNKADQAIAGVASFLKK 898
                +A+     +L K
Sbjct: 864 PEGIQEALKAAEDWLNK 880


>gi|256379272|ref|YP_003102932.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255923575|gb|ACU39086.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 890

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/920 (36%), Positives = 496/920 (53%), Gaps = 58/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F E F+  GH ++PS+SL+  +DP L+F N+GMVPFK  F G+    ++  
Sbjct: 1   MQTHEIIKRFREHFENAGHAVVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEAPSPHKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH TFF+M GNFSFG YFKE AI+LAWDL+TK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHLTFFQMAGNFSFGDYFKEDAIRLAWDLVTKSQDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TVY +D+EA  LW+KI+GL  ++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWVTVYLDDDEAADLWQKIAGLPPERIQRRDVEDNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ------ERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+              LP  +IDTGMG+
Sbjct: 176 YDRGPEF-GAEGGPVVDEDRYLEIWNLVFMQNERGAGGAKRDYPILGELPSKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY  N  + V  RVI DH RS   L+ D
Sbjct: 235 ERVAFLLQGVDNVYETDLVRAVITKAEELSGRKYGDNPTDDVRFRVIADHARSGVLLVGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RR +  +RLLG TEP++      +   MG +YPEL+     IE
Sbjct: 295 GVTPGNEARGYVLRRLLRRIVRSSRLLGVTEPVLQTFAAVVRDTMGPSYPELVSGFARIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           + L++E++ F +TLD G  + +     +      IL GD AF+L+DT+G P+D+  ++  
Sbjct: 355 QVLKAEEDTFLRTLDAGSRIFETAAGTVKSQGRAILPGDKAFQLHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F + + EQR+RA+A + G  +G  ++  +    + GAT+F GY  L   
Sbjct: 415 EAGLT-VDEDGFRKLMAEQRARAKADAAGKKTGHGDQTVYRELLELGATEFTGYTELAS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  ++++ IV  G+ V+ A  G  VEVV D+TP YAE+GG
Sbjct: 473 ----------------------EAVLRGIVSGGKRVKSAREGDIVEVVLDRTPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  +  G  L++ DVQK A  ++VH   V  G +     +   +D + R      
Sbjct: 511 QESDAGVIVSGGAELEVVDVQKVARKLWVHQVRVVSGEIAEGEKVEARVDAEWRVGARQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG    Q+GS   P  LR D   +  ++ +    IE+  N  + ++
Sbjct: 571 HSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWTGGLSESTRSEIEEVSNLAVRKD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV     +   A   GA AL G  Y++ VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 631 LPVSVVYTDMGGAQEMGAVALFGETYDETVRVVEI----GGRWSRELCGGTHVEHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  A  +L  +   ++++A+ LKV    V GRVE + E 
Sbjct: 687 PITVIGESSVGSGVRRLEAYVGIEAFKYLARERALVQNVAAMLKVPDAEVPGRVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHII----SEVDSKELKSVMDALQKKI 820
            R  +    K +    V        +  DV  +S +           +++++   ++ ++
Sbjct: 747 LRVAEKELEKVRSAQLVASAGSLVSQALDVRGVSVLALALPEGTSGADVRAIASEVRGRM 806

Query: 821 QSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ++   + +  K S ++  T    D    A  L    A  + GG GGG+P +AQ G
Sbjct: 807 ADKPGVVALFAPDGDKVSFVVATTAGARDLGLAAGKLVPAFAPAV-GGRGGGKPDLAQGG 865

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N     QA+A V + +++
Sbjct: 866 GTNPAGVPQAVAAVLAEVER 885


>gi|227529700|ref|ZP_03959749.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350366|gb|EEJ40657.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 884

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 516/919 (56%), Gaps = 69/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF+++GH+++PS+SL+P NDPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLKFFEEHGHKIMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK   I  AW+LLT    F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A+  W+++ G++ D +I     DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPERLYITYYPKDHDAYNKWREV-GVAKDHLIP--DEDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           +         P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E+ +G K  G    + +  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQTEKFSGSKKYGESKEDDIQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLENADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE++RF  TL+ GL LL+ V+++  KD    ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IKSEEDRFSATLNGGLNLLNNVIANAKKDGSNEIDGRTAFKLYDTYGFPIELTKEYASDE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W   K+   A++++GY  L    
Sbjct: 418 GLT-VDEDGFQAAMTEQQNRARNARDMDNGMGVQTDLWTDFKD---ASRYVGYTDLTVDN 473

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526
                                 + V  +   G+  ++A  G K +EV+FD TPFYAE GG
Sbjct: 474 ----------------------AKVIGLAHDGKQADDAQPGDKNIEVIFDVTPFYAEMGG 511

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ DTG  I +  +   ++ DVQ       +H   +    L+      L +D     ++ 
Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVEL-NAPLKKGARYKLVVDRIRHLKIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK++E  VN+ I 
Sbjct: 571 KNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAKDLKAVEKMVNEQIW 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E
Sbjct: 631 KEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVKNTNE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSE  + AG+RRIEA+T   A + L  +D+ L  +A+ LKV+Q   V  +VE +
Sbjct: 686 LGLFKIVSEGGVGAGVRRIEAVTSSDAFNFLQDRDDLLNKVATDLKVAQIKEVPHQVEAL 745

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + ++ Q   A  + ++  +       +  K A+ + ++  +      +L+ + D+ + 
Sbjct: 746 QSDLKEAQKQSAALQAKIAAQQANNVFENVQKTANGSLIAAEVQVAGMGQLRQLADSWRA 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S +++L G + + KA++L+ V++D + D   A DL ++ A  + GG GGGRP++AQ+
Sbjct: 806 KSLSDVLVL-GTANDGKANLLVAVSDDKVKDGLRAGDLIKVIAPAINGG-GGGRPNLAQA 863

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG        A+   A +L
Sbjct: 864 GGKKPEGIQDALKQAADYL 882


>gi|223039439|ref|ZP_03609727.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222879235|gb|EEF14328.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 849

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/894 (38%), Positives = 523/894 (58%), Gaps = 53/894 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  +L FF   GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+       + T+ 
Sbjct: 2   DIREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKRDAIAYAWEFVTQALKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW++   ++ ++I R   +DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHERDDEAFALWEQ--HIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+ +  +   LPK SIDTGMGLER+  +++ K +N
Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIMEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI+    + G  Y   +  ++RVI DH+RS +FL+A G     EGRGYVLRR
Sbjct: 239 YDSSLFMPLIEEVAALCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E ++ E+ERF  T+ 
Sbjct: 299 ILRRAIRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIKLEEERFLATIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L+     +I +G+ AFKLYDT G PLD+  D+L  +GL  +D   F++ + 
Sbjct: 359 SGLELFESELTRTK--DIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKFDELMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  + +  + +L EK+G  +F GY+ L                    
Sbjct: 416 EQKARAKAAWKGSGDKSAKGDFKALLEKFGENEFSGYEELE------------------- 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S ++  + +  +  +   +G++   +FD TPFYA++GGQ GD+G   G      +
Sbjct: 457 ---RTSKVLALLDEDFKETQILKAGEQGWAMFDVTPFYAQSGGQAGDSGEVAGA---ADV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK   G+ + +  V++  L+   ++ L +  + R +++ +HSATHLLH AL ++LG+
Sbjct: 511 LDTQK-FFGLSLSNVTVKK-ELKIGDTVKLKV-SEQRAEIARHHSATHLLHSALRSVLGT 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H++Q GS +    LRFD +H K +T+ EL  IE+ VN  I++N+   T IM+ EDA  SG
Sbjct: 568 HIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNAAISENIEAKTEIMDIEDAKNSG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D+VRV+S      G  S  LCGGTHVS+  +I   +I  E  + AG+RRI
Sbjct: 628 AIALFGEKYADKVRVLSF-----GEVSKELCGGTHVSNLSQIGAFFITKEGGVSAGVRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A +       +++ L + LK +    +G V+++  E + L+    + K     
Sbjct: 683 EAVCSKAALNLAKAWRSEIEELKTELKST--EPIGAVKKLKAEIKSLKDKAKQAK----- 735

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            +       +VN     ++ +D  ++K+ +D  + + +   I+LV +++E K ++   V 
Sbjct: 736 -NAHALACVNVNETKLCVAVLDGGDIKATIDEFKNENEKAAILLVQVNEEGKIALAAGVK 794

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                   A +  + +A++L GG GGG+   A +GG N    + A+     F K
Sbjct: 795 NAA---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAMRQAFEFAK 844


>gi|154174082|ref|YP_001408546.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|205830012|sp|A7GZA4|SYA_CAMC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112803074|gb|EAU00418.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 852

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/900 (40%), Positives = 528/900 (58%), Gaps = 55/900 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M N+  +R  +L FF+  GHE+ PS+ L+P ND TL+FTN+GMVPFK+IFTG+       
Sbjct: 1   MQNL-DVREAYLNFFKSKGHEITPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58

Query: 61  V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           + T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 59  IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLK 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY+TV++ D+EAF+LW +   ++ D+I R   +DNFW M +TGPCGPCSEIF+DQ
Sbjct: 119 LPVDRLYVTVHESDDEAFELWAR--HIARDRIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G E           +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  +++
Sbjct: 177 GGEHFNTPEDYMGGDGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAIME 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +NYD  LF  LI    ++ G  Y  ++  ++RVI DH+RS +FL+A G     EGRG
Sbjct: 237 GKFSNYDSSLFMPLIDEVAKLCGKPYSYDSGASYRVISDHIRSVTFLLAQGTTFDKEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E +R E+ERF
Sbjct: 297 YVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCEMMGGHYTYLNEKKAAVKEQVRLEEERF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+  GL L +  L+     EI +G+ AFKLYDT+G PLD+  D+L  +GL  +D   F
Sbjct: 357 LATIASGLELFNEELAKTK--EIFSGETAFKLYDTYGFPLDLTADMLREKGLK-VDEAKF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ + EQ++RA+A   G G  +++  +  L E++G  +F GYD L               
Sbjct: 414 DELMSEQKARAKAAWKGSGDKSSKGDFKQLLEEFGENKFSGYDELE-------------- 459

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     S I+  +    + V+   +G+   V+FD TPFYA++GGQ GDTG   G G
Sbjct: 460 --------RQSKILALLDNDFKRVQNLRAGESGWVMFDVTPFYAQSGGQTGDTGEITGVG 511

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ D QK   G+ +    V +  ++T   L L +    R +++ +HSATHLLH AL 
Sbjct: 512 ---KVLDTQK-FHGLNLSQVEVGKQ-IKTGDVLNLKV-SDARAEIARHHSATHLLHAALR 565

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ILG+HV+Q GS +  D LRFD +H K +TS EL+ IE  VND +A +    T IM+ E 
Sbjct: 566 KILGTHVAQAGSNVEADRLRFDFSHPKALTSEELEMIEKFVNDAVASSAAAKTEIMDIEA 625

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL G KY + VRV+S+     G  S  LCGGTHV +  EI   +I  ES + A
Sbjct: 626 AKNSGAIALFGEKYAENVRVLSL-----GNVSKELCGGTHVKNVSEIGAFFITKESGVSA 680

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+  + A +   G   +L  +++ LK ++  V   ++++  E R+L     K K
Sbjct: 681 GVRRIEAVCSRAALNLARGFRSELAEISNELKTNEPMVA--IKKLKGEVREL-----KDK 733

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           L+ N+ D        +N     ++ V S ++K+++D  + +  S  I+L+ +  + K ++
Sbjct: 734 LK-NIGDSHAIAFTSINDTKMGVAVVKSGDIKTMIDNYKNEFASLAILLLQV-NDDKIAI 791

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              V         A +  +++AK+L  G GGGR   A +GG N    + A+     F K+
Sbjct: 792 AAGVKNAP---IKAGEWVKMAAKIL-DGNGGGRDDFATAGGKNVPMIETAVKEAFEFAKE 847


>gi|283955931|ref|ZP_06373421.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792591|gb|EFC31370.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 842

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/895 (39%), Positives = 506/895 (56%), Gaps = 58/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEVTPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKAE------------------- 456

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S + A++   E  E +       V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 457 ----CESKILALL-DEEFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK            E   L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 508 LDTQKFFNLNLSFIKAGEE--LKVGDIVHAKIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A   +  Q E+L      LK +         +I    +KL+      K +L  
Sbjct: 680 EAVVSKAALEFVKNQLEELSKAKDELKNN---------DILSGLKKLKNEILSLKNELKN 730

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +     ++  +   +  VD+ ++K+++D  + K    +I+L+ + K++K ++   V 
Sbjct: 731 SSKTELDSKNIQGVEICVKRVDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV- 788

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +D+     A  L + +A++L GG GGGR   A +GG + NK D+A+      ++K
Sbjct: 789 KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLNKIDEALKQSLETIEK 840


>gi|227888705|ref|ZP_04006510.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
 gi|227850732|gb|EEJ60818.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200]
          Length = 892

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/918 (36%), Positives = 508/918 (55%), Gaps = 65/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 15  TSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   L
Sbjct: 75  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGL 130

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 131 DPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRG 187

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+
Sbjct: 188 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERV 245

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG 
Sbjct: 246 VSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGA 305

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++ +  I++ 
Sbjct: 306 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVEQQAFIQKV 365

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     
Sbjct: 366 IKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDA 425

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F           
Sbjct: 426 GLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEF----------- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ+
Sbjct: 472 ------------EYGTLEEKHAKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGGQV 518

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     L  ++TDVQ       +H   V    L      VL +D + RR L  N
Sbjct: 519 ADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVI-LPLEKGQEYVLKVDQKRRRGLKHN 577

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I + 
Sbjct: 578 HTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWEE 637

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I 
Sbjct: 638 IPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQIG 692

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I  
Sbjct: 693 MLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIEA 752

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + R  Q    + K Q+N        + I  V  ++ I ++ D     +L+ + D  +   
Sbjct: 753 DLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSSN 812

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L      K   V+ +  + +     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 813 KSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGGG-GRPNMAQAGGK 871

Query: 881 NGNKADQAIAGVASFLKK 898
           N      AIA V   +++
Sbjct: 872 NPAGLKAAIAKVLQEVEE 889


>gi|257792293|ref|YP_003182899.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|317490214|ref|ZP_07948702.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|257476190|gb|ACV56510.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|316910708|gb|EFV32329.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
          Length = 878

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/928 (34%), Positives = 490/928 (52%), Gaps = 87/928 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59
              + IR  +L FF++ G +  PSSSLIP +DP+L+ T++GMV FK  F  Q+     Y 
Sbjct: 4   MTSAEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TTVQKCVR     ND+D +G T RH +FFEMLGNFSFG YFKE     A++  T+   
Sbjct: 63  GTTTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TVY +D+E  ++WKK+ G+  D I R+  +DNFW    TGPCGPCSEI+FDQ
Sbjct: 119 LPAERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQ 177

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P  +   + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A +L
Sbjct: 178 GEDFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAIL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ D+ + L+   E++TG  Y  +    ++ R++ DH R+ +F+IADGILP+NE
Sbjct: 238 QGVQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+
Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG  L +G   LD  L+ L + E+L GD AF L+DT+G P+++ +++   RG+  +D+
Sbjct: 358 ERFGSNLRQGRAFLDEALAEL-EGEVLPGDRAFTLHDTYGFPVEVTRELCDERGIE-VDM 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F + ++EQR RARA +             +   + E  G T+F+GY            
Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMNEILEAVGPTEFLGY------------ 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V A+V+ G  V+   +G +  VV D TPFYAE GGQ+GD G
Sbjct: 464 -----------TKNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGDAG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D   + + D ++  +G+  H   VE G L    ++   ID   R ++  NH+ATH+
Sbjct: 513 VLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTATHI 572

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N  I +N PV   
Sbjct: 573 LHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANQKIMENHPVRAY 632

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  + I S
Sbjct: 633 ETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKITS 687

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     +  + LQ 
Sbjct: 688 ETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDLQT 747

Query: 773 IHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              + +  +  + ++          A    +   + E D+ +++++ D L+ ++      
Sbjct: 748 KLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQPGAA 807

Query: 827 LVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG------ 879
           ++   K+ K ++L   T + ++  F+A  + +  +                  G      
Sbjct: 808 VLATEKDGKPTLLAAGTPEAVEVGFDADAVIKAIS------------------GNIKGGG 849

Query: 880 -----------PNGNKADQAIAGVASFL 896
                       + +  D A+      L
Sbjct: 850 GGKAAMAQAGGKDASGIDAALQAARDML 877


>gi|256826954|ref|YP_003150913.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
 gi|256583097|gb|ACU94231.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641]
          Length = 878

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/914 (36%), Positives = 494/914 (54%), Gaps = 56/914 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59
              + IR  +L +F+  G + +PSSSLIP +DP+L+ T++GMV FK  F  Q+     Y 
Sbjct: 1   MTTAEIRERYLRYFESKGCKRMPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAPYI 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVR     ND+D +G   RH +FFEMLGNFSFG YFKE     A D    E  
Sbjct: 60  GTTTAQKCVRT----NDIDLIGTDGRHLSFFEMLGNFSFGAYFKEEMCAWALDFSLNELG 115

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY TVY++D+E  ++WK + G+ A  I ++   DNFW    TGPCGPCSE+++DQ
Sbjct: 116 LPKEKLYFTVYEDDDETIEIWKNL-GIEASHISKMGEEDNFWRAGPTGPCGPCSELYYDQ 174

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G  +  G P  +   E +R++E WN VF Q++ Q       LPK +IDTGMGLERMA +L
Sbjct: 175 GPEVGCGRPDCAPGCECDRFLEYWNCVFTQYDAQEDGTLKPLPKKNIDTGMGLERMAAIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q  ++N+D D+ + L+   E+++G  Y  ++      RV+ DH RS +F+IADGILP+NE
Sbjct: 235 QSVSSNFDTDVLRGLVAVGERLSGRSYGASDADDRALRVMADHSRSMTFMIADGILPSNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG     +   +  +   MGS Y EL++ + LI+  + SE+
Sbjct: 295 GRGYVLRRLLRRAVMKGHLLGIEGAFLGSFVDEIIQVMGSEYAELVENRDLIKRVVASEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG TL +G   L   L  L    +L+G+VAF L+DT+G PL++ Q+I    G+  +D+
Sbjct: 355 ERFGSTLRQGRAYLQEALDGLS-GGLLSGEVAFTLHDTYGFPLEVTQEICAESGIE-VDV 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTT---EKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             FN  ++EQRSRAR  +           +    +L E+ GAT F GYD           
Sbjct: 413 EQFNHLMDEQRSRARRATQDDAEAAWSTYDGSMAALLEQVGATVFTGYDE---------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N  +  V+A+++ GE V    +G+   VV D++PFYAE GGQ+ DTG
Sbjct: 463 -------------NKSAGHVRALLRDGESVCTLSAGEAGCVVLDRSPFYAEMGGQVADTG 509

Query: 533 CAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                      ++TDV+    G+ VH+  VE+G    +  ++ +ID   R ++  NH+AT
Sbjct: 510 TITSPDGASCARVTDVKAPESGLIVHYVQVEQGSFTIDDEVIGSIDVARRERIRRNHTAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH  LS +LG+HV Q GS + P+ LRFD TH + I  A L  IE+  N +I +  PV 
Sbjct: 570 HILHKVLSEVLGNHVKQAGSYVAPNRLRFDFTHFEAIDRATLDEIENVANRVIMEAHPVH 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T     ++A   G  AL G KY + VRVV ++       S  LCGGTHV +T EI  + I
Sbjct: 630 TYETTLDEAREQGVTALFGEKYGEVVRVVDIDG-----FSRELCGGTHVRNTSEIGFVKI 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE S  A +RRIEA+T   A ++     ++L+  A+   V   +V  R     E+ + L
Sbjct: 685 VSEQSTGANMRRIEAVTSFDALAYTDRMRDELRQTAAVFGVPLFDVNERAAIATEQLKTL 744

Query: 771 QLIHAKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           Q    + K      D+            A    + + +  +D+  L++  D  +  +   
Sbjct: 745 QAQAKRAKKIAVASDIRTLVDKAISTSRAGYPVLIYRLDGMDAGSLRNTWDIARAHLGET 804

Query: 824 IIMLVGISKEKKASVL-IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
             +++    E K  ++       +   F+A  + +  A  + GGGG G+P MAQ+GG + 
Sbjct: 805 CAVVLASDNEGKPLIMAAGTDAAVAAGFDAGAIIKEVAGAISGGGG-GKPSMAQAGGKDP 863

Query: 883 NKADQAIAGVASFL 896
              D+A+      L
Sbjct: 864 AGLDEALDIARRML 877


>gi|86151665|ref|ZP_01069879.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124034|ref|YP_004066038.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841294|gb|EAQ58542.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017756|gb|ADT65849.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 842

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/896 (38%), Positives = 511/896 (57%), Gaps = 60/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
            D QK      ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 508 LDTQKFFN---LNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  S
Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RR
Sbjct: 625 GAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A   +  Q E+L  +   LK +  +++  V+++  E           K +L 
Sbjct: 679 IEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEI-------LSLKNELK 729

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +     ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V
Sbjct: 730 NSSKTELDSKNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +       A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 KDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|126660159|ref|ZP_01731277.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126618524|gb|EAZ89275.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 879

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 516/906 (56%), Gaps = 48/906 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + IR  FL+F+ +  H++LPS+SLIP  DPT++ T +GM+PFK IF GQ++P +  
Sbjct: 7   FLTGNQIRDRFLQFYAQQNHQILPSASLIP-EDPTVLLTIAGMLPFKPIFLGQKQPDFPR 65

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L T+ + L
Sbjct: 66  ATTSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTQVYQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               + ++V++ D+EAFKLW+++ G+   +I R+   DNFW    TGPCGPCSE+++D  
Sbjct: 122 PPENIVVSVFENDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFH 181

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
               G      E+  R+IE +NLVFM++ +  +     L K +IDTGMGLERMA +LQ+ 
Sbjct: 182 PE-RGEESIDLEDDSRFIEFYNLVFMEYNRDVEGNLTPLQKKNIDTGMGLERMAQILQKV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
            NNY+ DL   +I+ +  +  + Y        V+ +VI DH+RS   +I+DGI  +N  R
Sbjct: 241 PNNYETDLIFPIIETAANIANINYHKATEKTKVSLKVIGDHVRSVVHMISDGITASNTDR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR + + RL+G     +  +          AYP++ + +  I+  L  E+  
Sbjct: 301 GYVLRRLIRRVVRHGRLIGIEGQFINQVAETAIQLSQKAYPQVRERESFIKGELEREETA 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL+RG  LL  ++    K   ++G  AF LYDT G P ++ Q+I     L  ++I  
Sbjct: 361 FLKTLERGEKLLAEIIEKTEKQGQISGVDAFTLYDTFGFPFELTQEIAEESNLT-VNIKE 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +++Q+ R++A    +   T +     L E    T+F+GY  L+             
Sbjct: 420 FEAEMKQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQ------------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                     +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G   G+
Sbjct: 466 ----------LTAKVEAVLIQGKSVDIAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGE 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ DVQK++ GIFVH   VERG +    ++  TID   RRQ+  NH+ATHLL  AL
Sbjct: 516 NLVIRVDDVQKES-GIFVHFGRVERGQIAINDNVKATIDRACRRQVQANHTATHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ++ + +SQ GS +  D LRFD    + +TS EL+ IED +N  IA+     T +M  E
Sbjct: 575 KKVVDNSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHDTETAVMPLE 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A   GA A+ G KY+  VRV+ V        S  LCGGTHV +T EI L  I+SES I 
Sbjct: 635 TAKEKGAIAMFGEKYSAEVRVIDVPG-----VSMELCGGTHVKNTAEIGLFKIMSESGIS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           +GIRRIEA+ G     +L  ++  +K L    K+    +  R+  +  E +  + QL   
Sbjct: 690 SGIRRIEAVAGPAILEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQKQLEAV 749

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K+ L +   D   ++   +     ++S   E+D+K L++  + LQ+K+  G ++L  I  
Sbjct: 750 KQDLAVAKSDQLLNEAETIGEFKLLVSDMGELDAKALQTAAERLQQKLGEGAVILGSIPS 809

Query: 833 EKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K S++   ++ +    +  A       AK+ GGGGG GRP++AQ+GG   +K  +A++
Sbjct: 810 EGKVSLVAAFSKKVNKEKQLQAGKFIGQIAKICGGGGG-GRPNLAQAGGREPSKLSEALS 868

Query: 891 GVASFL 896
                L
Sbjct: 869 TAKQQL 874


>gi|254993607|ref|ZP_05275797.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-064]
          Length = 826

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/861 (38%), Positives = 482/861 (55%), Gaps = 54/861 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTE-------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 467 ---------------QVSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHL
Sbjct: 512 TIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHL 571

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV  
Sbjct: 572 LHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIE 631

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVS
Sbjct: 632 EMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVS 686

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE++  + R+++ 
Sbjct: 687 ETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQADLREVKR 746

Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +     +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L
Sbjct: 747 ENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVL 806

Query: 828 VGISKEKKASVLIVVTEDLLD 848
             +  + K +++  V+E+ + 
Sbjct: 807 GAVQGD-KVNLISAVSEEAIK 826


>gi|116512579|ref|YP_811486.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
 gi|123320246|sp|Q02XE9|SYA_LACLS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116108233|gb|ABJ73373.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11]
          Length = 872

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/916 (35%), Positives = 484/916 (52%), Gaps = 69/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLE
Sbjct: 176 GEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G+ Y  ++  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGITYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    + G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++ Q+ RARA  +  GS   +    S  E               SKF
Sbjct: 416 GFK-IDHEGFKVAMKAQQDRARAAVVKGGSMGAQNETLSSIE-------------VDSKF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + ED+K               + +   ++  E+V+E     K ++VFD TPFYAE GGQ+
Sbjct: 462 LYEDKK-------------SQAKLLVAIKDDELVDEVTG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIG-DGIRLQ-ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G     DG  +  + DVQ    G  +H        L+   +  L ID + R  +  N
Sbjct: 507 ADHGVIKNADGQEVATVLDVQHAPHGQNLHSVETTS-PLKVGETYTLEIDEERRSAVVKN 565

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+
Sbjct: 566 HTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQS 625

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T +I 
Sbjct: 626 LKVETIETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSQIG 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWE 765
           L  I+ E  I +G+RRI A+TGQ+A       +  L  +A  +K  Q   +V +V  + +
Sbjct: 681 LFKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQD 740

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E +  Q  +     +L          +  +   V+F++  ++  D+  L+++ D  ++K 
Sbjct: 741 ELKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDANGLRNLADIWKQKE 800

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    EK + ++   + D      A +L +  A  +  G GGG+P MA +GG 
Sbjct: 801 LSDVLVLVATIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGS 855

Query: 881 NGNKADQAIAGVASFL 896
           N     + +  VA  L
Sbjct: 856 NAAGIPELLTAVAEKL 871


>gi|251782836|ref|YP_002997139.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391466|dbj|BAH81925.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 872

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/913 (35%), Positives = 495/913 (54%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y ED++++  W  + G+    +I +   +NFW +   GP GP +EIFFD+G
Sbjct: 121 PKEKLYMTYYPEDKDSYNRWLAL-GVDPSHLIPL--EENFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF    +    E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKDIFKLYDTYGFPVELTEEMAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +              +   S F+
Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQNETLA-------------GITESSTFL 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            E                V + +  I+   E  E    GQ   +VFDQTPFYAE GGQ+ 
Sbjct: 463 YET-------------ETVDARLAVIIVDNERSEVVSEGQ-ALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G           ++ DVQK   G  +H   V    L  +    L ID++ R  +  NH
Sbjct: 509 DRGVIKNANGDIVARVIDVQKAPNGQALHTVDVL-ASLALDTVYTLDIDHKRRYAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I + L
Sbjct: 568 TATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIWKAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A + GA AL G KY   VRVV +     G +S  LCGGTH+++T EI L
Sbjct: 628 AITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LK  Q   V  +V  + E+
Sbjct: 683 FKILKEEGIGSGTRRILAVTGQQAFESFRKQEDALKEIAHTLKAPQMDQVPAKVVSLSEQ 742

Query: 767 YRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R LQ  +   K K           ++ +VN + +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   +++     +A ++ ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SEVLVLVAAIGEKVNVLVASKSKE----VHAGNMIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K    +A V  
Sbjct: 858 ASKISDLMAAVPE 870


>gi|256847960|ref|ZP_05553404.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715020|gb|EEU29997.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN]
          Length = 883

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/920 (35%), Positives = 503/920 (54%), Gaps = 68/920 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + +R  +L+FF ++GH+ +PS SL+P +DPTL++ NSG+   K  F G+  P    +T
Sbjct: 8   NSAQVRRMYLDFFIQHGHKEMPSRSLVPVDDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+  I  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKKEVIPWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+T Y +D +A+  W+  +G+  + +I+    DNFW + + GP GP +EIF+D+G
Sbjct: 124 DPEKLYVTYYPKDHDAYNYWRA-AGVPENHLIQN--KDNFWDIGQ-GPSGPDTEIFYDRG 179

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+
Sbjct: 180 QEMNNVAEDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290
            ++ +    N++ DLF  LI+ +E  +  K  G    + V  ++I DH+R+ +F I DG 
Sbjct: 238 VSIFENAPTNFETDLFMPLIKQTETFSQNKQYGQNAADDVQFKIIADHIRTITFAIGDGA 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYV+RR++RRA+   + LG  EP +  ++P +   M   YP++++    I   
Sbjct: 298 LPSNMGRGYVIRRLLRRAVVTGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++SE+ERF  TL+ GL LL+ V+    ++    ++G  AFKLYDT+G P+++ ++     
Sbjct: 358 IKSEEERFSTTLNGGLNLLNNVIDDAKQNGTNEIDGKTAFKLYDTYGFPIELTKEYASDE 417

Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F  A+ EQ++RAR A  +  G G    +W    E    ++++GY  L    
Sbjct: 418 GLT-VDQSGFEAAMTEQQNRARNARDIDNGMGVQTDVWTDFTE---PSKYVGYHQL---- 469

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQKVEVVFDQTPFYAEAGG 526
                             +  ++ +  +   G+ V+EA      +EV+FD TPFYAE GG
Sbjct: 470 ------------------SVENAKIIGLTADGQHVQEADPQADDIEVIFDVTPFYAEMGG 511

Query: 527 QLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ DTG  I +      ++ DVQ       +H   +    ++      L +D     ++ 
Sbjct: 512 QVADTGDIIDNYGHQVGRVVDVQHAPHQQNLHRVKLT-APIKLGAKYRLVVDRIRHLKIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H  Q GS +    LRFD  H   +T+ +LK++E  VND I 
Sbjct: 571 KNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKAVEKMVNDQIW 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +PV T   + + A   GA AL   KY D+VRVV +     G +++  CGG HV +T E
Sbjct: 631 KEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDHVQNTNE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEI 763
           + L  IVSE+ + AGIRRIEA+TG  A   +  + + L ++A+ LKVSQ   V  RV+E+
Sbjct: 686 LGLFKIVSEAGVGAGIRRIEAVTGSDAFKFMQERTDLLDTVANELKVSQEKEVPHRVQEL 745

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + + L+  +A  + ++  +                 ++  ++     +L+ + D  + 
Sbjct: 746 QTQLKDLEKDNANLQAKIAAQQASQVFDDVQDTKQGRLIAAELNVAGMGQLRQLADQWRA 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K QS  ++L   + + KA++L+ V++    +  A DL +  A  + GG GGGRP +AQ+G
Sbjct: 806 KGQSDFLVLATANGD-KANLLVAVSDTKAKKVKAGDLIKAIAPAINGG-GGGRPTLAQAG 863

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N     QA+     +L +
Sbjct: 864 GKNPAGIKQALQQANDYLNQ 883


>gi|160942602|ref|ZP_02089847.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446081|gb|EDP23084.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103506|emb|CBL01050.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3]
          Length = 886

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/913 (36%), Positives = 507/913 (55%), Gaps = 49/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFK+  I  AW+ LT  +   
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKDEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + RL+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW     GPCGPCSEI+FD+
Sbjct: 120 IPKDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHGS-GPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E + G  Y+ +    ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QNVGNLFEVDTVQSVLHHVEHIAGKTYKQDPKTDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG   P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGIDHPFLVDLVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K   ++L+G  AFKL DT G PLD+ ++I   +GL  I
Sbjct: 359 ANFARTIDAGMNILNNMIDRLEKAHQKLLSGMDAFKLNDTFGFPLDLTKEIAAEQGLE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F+  +++Q+ RARA  L    SG +E ++ +L+ +   T F GYD L         
Sbjct: 418 DEDGFHAEMKKQKERARAERLKKNISGWSEDLFGALEAE--PTVFTGYDTL--------- 466

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                 K  +   +   ++  AI       EEA  G  V VV D+TPFYAE GGQ  D G
Sbjct: 467 ----TDKGTVVALSDEETLTDAIATD----EEAKDG--VLVVLDKTPFYAEMGGQAADHG 516

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G    L++ DV+K  +G +VH  ++E GI++    L   +D   R  ++ NH+ATHL
Sbjct: 517 VLNGAECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDVLTAQVDKGYRMAIARNHTATHL 576

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG HV Q GS        FD TH   +T  EL  ++  VND I  ++ V  +
Sbjct: 577 LQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELARVQKIVNDKIFDSMNVTVQ 636

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I    IVS
Sbjct: 637 EMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIVS 691

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
           ESS+ AGIRRIEA+TG+        Q+  L  +A+ LK +    +  R E +  E + + 
Sbjct: 692 ESSVAAGIRRIEAVTGRNLLIRANLQEAMLHDVANTLKANNVAALPARAEAVMAENKAMS 751

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K ++    +     +  +   V   S   +      L+ + D+++ K  + ++ 
Sbjct: 752 RELEEMKAKIAASKVDSLFDNAEEADGVKIASAYFTGTTGDTLRGMCDSIRDKAVNPVVA 811

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++    E K ++ + V +   ++   A  L +  + + GG GG G+P  A +G  +  K 
Sbjct: 812 VLVGKAEDKITMAVTVNKLAQEKGLKAGVLVKELSAIAGGKGG-GKPDFAMAGLKDETKI 870

Query: 886 DQAIAGVASFLKK 898
           D+A+A V++ +KK
Sbjct: 871 DEALASVSAIVKK 883


>gi|42518570|ref|NP_964500.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
 gi|48428507|sp|P61702|SYA_LACJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41582855|gb|AAS08466.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533]
          Length = 882

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/918 (36%), Positives = 508/918 (55%), Gaps = 65/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F           
Sbjct: 416 GLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ+
Sbjct: 462 ------------EYGTLEEKHAKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     L  ++TDVQ       +H   V    L      VL +D + RR L  N
Sbjct: 509 ADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVI-LPLEKGQEYVLKVDQKRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I + 
Sbjct: 568 HTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWEE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I 
Sbjct: 628 IPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I +
Sbjct: 683 MLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + R  Q    + K Q+N        + I  V  ++ I ++ D     +L+ + D  +   
Sbjct: 743 DLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSSN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L      K   V+ +  + +     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 803 KSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFLKK 898
           N      AIA V   +++
Sbjct: 862 NPAGLKDAIAKVLQEVEE 879


>gi|284032274|ref|YP_003382205.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283811567|gb|ADB33406.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 889

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/917 (35%), Positives = 503/917 (54%), Gaps = 62/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL++F+  GH ++PS+ L P  DP L+F  +GM  F   F GQ+ P Y   
Sbjct: 1   METSEIRRRFLQYFEDRGHTVVPSAPL-PSPDPNLLFNVAGMAQFVPYFVGQQTPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFK++AI+ AWDL+TK     
Sbjct: 60  TSVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKDQAIEYAWDLVTKPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D+  LY +VY ED+EA  +WK+++GL  D+I+R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGFDESVLYASVYYEDDEAIDIWKRVAGLPDDRIVRLGMKDNFWSMGVPGPCGPCSEIL 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G           E G+RY+E WNLVFMQ  +     +        LP  +IDTG+GL
Sbjct: 176 IDRGPEFGADRD--WEAGDRYLEFWNLVFMQNVRGEGGGKEGYPILGELPNKNIDTGLGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ + +++G KY  +  + V  RV+ DH+RS+  LI D
Sbjct: 234 ERVAYLLQGVDNMYEIDEIFPVIERAAELSGRKYGVDHVDDVRFRVVADHVRSALMLIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE  GYVLRR++RRA+   RLLGY +P ++ LLP    +M  +YPEL      I 
Sbjct: 294 GVTPGNEQGGYVLRRLLRRAVRSMRLLGYEDPSLVELLPTSLEQMKKSYPELETDFGRIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E++ F +TL  G  + D  + ++  +    L G  AF+L+DT+G P+D+  ++  
Sbjct: 354 QIAYAEEDAFRRTLTAGTSIFDVAVKNVKAEGGARLAGAQAFQLHDTYGFPIDLTVEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  +D   F   + EQR RA+A +     G  +   +    + G T+F GY  L   
Sbjct: 414 EQGL-QVDTEGFRSLMTEQRERAKADARAKKLGHADTSGYRELREKGITEFTGYTELATD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S ++ ++++G + + A  G+ VEVV ++TPFYAE+GG
Sbjct: 473 -----------------------SQIRGVLREGAVAQAAEPGETVEVVLEKTPFYAESGG 509

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G  + DG++LQ+ DVQ+  +G+ VH   V  G+++  + +   +D++ R +    
Sbjct: 510 QIADEGLIVADGVKLQVLDVQRPVKGLIVHKVKVLEGVVQPGLDVHAQVDHEWRVEACQA 569

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG    Q+GS   P  LR D   S  +  A    IE+  N  + Q+
Sbjct: 570 HSGTHVVHAALRQVLGPTALQSGSYNKPGYLRLDFAWSSALDQATRSEIEEVANLAVRQD 629

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV  + M   +A   GA AL G  Y+++VRVV +    GG  S  LCGGTHV  + ++ 
Sbjct: 630 LPVSAQYMTLPEAREWGALALFGETYDEQVRVVEI----GGPWSRELCGGTHVKHSSQVG 685

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            L + SESS+ AG+RR+EA  G  A   L  +   ++ L+  LK     +  +V ++ E 
Sbjct: 686 ALTVTSESSVGAGVRRLEAFVGLEALRFLGRERSLVRLLSENLKTRPEELPAKVADLAER 745

Query: 767 YRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKSVMDALQKKI 820
            R  +    K +    +           DV  ++++       V+  +L+ +   ++ ++
Sbjct: 746 LRAAEKELEKVRASQVMAAAGELAASPKDVFGVAYVGHRAPDGVNGGDLRKLALDVRGRM 805

Query: 821 QS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +    ++ LVG+  + K +V++ + +   + R  A DL R++A+ L GG GGG+  +AQ
Sbjct: 806 PADKPAVVALVGV-NDGKPAVVVALNDTAREWRLKAGDLVRVAAEQL-GGRGGGKDDVAQ 863

Query: 877 SGGPNGNKADQAIAGVA 893
            GG +   AD+A++ V 
Sbjct: 864 GGGTDPAGADKALSAVE 880


>gi|225428201|ref|XP_002278951.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera]
          Length = 1006

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/929 (35%), Positives = 498/929 (53%), Gaps = 72/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++  SIR  FL+F+   GH++LPSSSL+P +DPT++ T +GM+ FK IF G+        
Sbjct: 107 TSGDSIRHRFLDFYASRGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKVPRQVPRA 165

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+C+R     ND++NVG+T+RHHTFFEMLGNFSFG YFK+ AI+ AW+L T E+ L 
Sbjct: 166 TTAQRCIRT----NDVENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLP 221

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+I+VY++D+EA  +W K  G+  ++I R+   DNFW+   TGPCGPCSEI++D   
Sbjct: 222 ADRLWISVYEDDDEALAIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHP 281

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G       +  R+IE +NLVFMQ+ +++      L +M+IDTG+GLERMA +LQ+  
Sbjct: 282 E-RGYSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVP 340

Query: 242 NNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   +I+ + ++  + Y   + +  +N +VI DHLR+  +LI+DG++P+N GRG
Sbjct: 341 NNYETDLIYPIIEKASELANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRG 400

Query: 299 YVLRRIMRRAMCYARLLGYTEP--------LMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           YV RR++RRA+   RLLG             +  +   +        P++      I E 
Sbjct: 401 YVARRLIRRAVRTGRLLGIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEE 460

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQD 403
           L+ E+ RF +TL+RG  LLD +L++        G   IL+G   F LYDT+G P++I  +
Sbjct: 461 LKREELRFVQTLERGEKLLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTE 520

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               RG+ GID+  F   +E QR +++A    +           L E    T+F+GY+ L
Sbjct: 521 AAEERGV-GIDMNGFEIEMENQRRQSQAAHNAVKLAVGNSA--DLTENISDTEFLGYETL 577

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     ++++ ++  G  V +   G  VE+  ++TPFYAE
Sbjct: 578 -----------------------STKAVIEGLLVNGNPVIQVSEGSDVEIFLNRTPFYAE 614

Query: 524 AGGQLGDTGCAIGD------GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           +GGQ+GD G    +         ++I DVQK    IFVH   ++ G++     +   +D 
Sbjct: 615 SGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTIKEGVVEVGKEVEAAVDA 674

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R++  I+H+ATHLL  AL  ++G   SQ GS +  D LRFD    +P+   EL  IE+
Sbjct: 675 NLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFDFNFHRPLQEKELVEIEE 734

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N  I     + T++M   DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 735 LINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 789

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D  ++ L S LKV    V 
Sbjct: 790 HVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQLCSTLKVKAEEVT 849

Query: 758 GRVEEIWEEYR--KLQLIHAKRKLQ------LNVEDLSCHKIADVNFMSHIISEVDSKEL 809
            RVE + EE R  + ++   + K        +            +  +   + ++D+  L
Sbjct: 850 TRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVLVESMDDIDADSL 909

Query: 810 KSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           KS  + L   +Q    ++L     E+K S++   T  ++D    A       AK+ GGGG
Sbjct: 910 KSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGVVDLGIQAGKFIGPIAKLCGGGG 969

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GRP+ AQ+GG        A+      L
Sbjct: 970 G-GRPNFAQAGGRKPENLSGALEKAREEL 997


>gi|150021161|ref|YP_001306515.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|205830274|sp|A6LMH9|SYA_THEM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149793682|gb|ABR31130.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 859

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/902 (38%), Positives = 551/902 (61%), Gaps = 57/902 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FLEFF+K GH++LPS+SLIP +DP LMFT +GMVPFK IF G+  PVY  VTT Q
Sbjct: 5   EIRQLFLEFFEKKGHKILPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRVTTCQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R      D++NVGRT RHHTFFEMLGNFSFG YFK  AI+ AW+ +T+   + + RL
Sbjct: 64  KCIRT----TDIENVGRTPRHHTFFEMLGNFSFGDYFKREAIEWAWEFVTQVLKIPEERL 119

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECIP 184
           +I+VY+EDEEA+ +W+KI G+S++KI+++   DNFW     TGPCGP +EIF+D G+ +P
Sbjct: 120 WISVYEEDEEAYDIWRKI-GVSSNKIVKLGKEDNFWGPAGPTGPCGPDTEIFYDTGKEVP 178

Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G  P       R++EIWNLVF ++ Q    +   L + +IDTG GLER+A ++Q   
Sbjct: 179 ITDGKEPNPGNTEGRFVEIWNLVFTEYYQDENGQLLPLKRKNIDTGAGLERIAAMMQGVY 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            N+D DLF  +I     V  ++Y  +  + V+ RVI DH+R+  FLI+DG+ P+NEGRGY
Sbjct: 239 YNFDTDLFLPIINRITDVLNVEYGRDEKHDVSIRVIADHIRALVFLISDGVFPSNEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRRI+RRA  + ++LG  +P + +++ A+  +MG  YPE+++ +  ++E +  E+ERF 
Sbjct: 299 ILRRILRRAARHGKMLGSEKPFLHNIVDAVVEKMGKIYPEIVEKQSFVKEIIYGEEERFL 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           + L++GL ++D ++   G    ++G+ AFKLYDT+G PLDI++D+    G   +D   FN
Sbjct: 359 QNLNKGLDIVDKIVKETGGK--IDGEAAFKLYDTYGFPLDILRDLANENGYI-LDEEGFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E+QR +AR  + G    +    + +L     +T+F+GYD+L  +  + +        
Sbjct: 416 KYMEQQRKKAREAA-GEVEFSERTDYETLD---ISTKFVGYDVLSTNARVLK-------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                           ++  + V+E    +  E++ D+TPFY E GGQ+ D G   G   
Sbjct: 464 ----------------IRTEKFVDEVKDVE-CELILDETPFYPEKGGQVADKGVIKGKNG 506

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +T+V    EGI VH   + +G +R   ++  ++D + R+  + NH+ATHLLH AL  
Sbjct: 507 EFVVTNVYVPVEGIIVHKGKL-KGKIRVGDAIFASVDEKKRKATARNHTATHLLHAALRK 565

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV Q GS + P+ LRFD TH   +T  E++ IE  VN+ I + + V T++M+ ++A
Sbjct: 566 VLGTHVRQAGSLVAPERLRFDFTHYAALTKEEIEKIEKMVNEKILEAIDVNTKVMSYDEA 625

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           I +GA AL   KY D+VRVV +        S  LCGGTHV +TGEI L  I+SESS+ AG
Sbjct: 626 IKNGAMALFEEKYGDKVRVVRIR-----DFSEELCGGTHVKNTGEIGLFKIISESSVSAG 680

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRK 778
           +RRIEAITG  + ++L   +   K +   L  +  NV  ++E++ E  ++L+L I   +K
Sbjct: 681 VRRIEAITGFASLTYLENLETNWKKIKEELDATDENVFVKIEKLKEGIKQLELKIKEIQK 740

Query: 779 LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             +N++ +  +     ++ ++ +    V+   L+ + D L  +   G+ ++V  +K+   
Sbjct: 741 NMINIKQILNNVQIENEIKYLVYEFEGVEQNTLRDLADKLIDR---GVDLVVFFNKQGDK 797

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +LIV  +   ++ +A ++A+  +K+L GG GGGRP  AQ+GG + +K ++A + +   L
Sbjct: 798 VILIVKRKKTFEKLHAGNIAKSLSKILDGG-GGGRPDFAQAGGKDVSKINEAKSKLIEIL 856

Query: 897 KK 898
           ++
Sbjct: 857 RE 858


>gi|139473577|ref|YP_001128293.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|205830227|sp|A2RDY3|SYA_STRPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|134271824|emb|CAM30058.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
          Length = 872

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/913 (34%), Positives = 488/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G        +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVITENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W    G+    ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L     + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +                           
Sbjct: 417 YK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN-------------------------- 449

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           +    ++ +      T  + S +  I+   E  E    GQ   +VF QTPFYAE GGQ+ 
Sbjct: 450 ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-ALLVFAQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG    D      ++ DVQK   G  +H   V    L    +  L I+ + R  +  NH
Sbjct: 509 DTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTNYTLEINKERRLAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L
Sbjct: 568 TATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A   GA AL G KY   VRVV +     G +S  LCGGTH++++ EI L
Sbjct: 628 TITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TG++A      Q++ LK +A+ +K  Q  +   +V+ + + 
Sbjct: 683 FKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDS 742

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R  Q  +A+ K +              +   V  ++  +   D+  L++  D  ++K  
Sbjct: 743 LRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRIIASQVDVADAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   T+D     +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K  + +A VA 
Sbjct: 858 ASKIAELLAAVAE 870


>gi|17229910|ref|NP_486458.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|20532251|sp|Q8YUD4|SYA_ANASP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|17131510|dbj|BAB74117.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 880

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/906 (37%), Positives = 515/906 (56%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IRT FL+F+ + GH++L S+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNEIRTRFLDFYAQRGHQILASASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFKE+AI   W++ T+ F L +
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EA+ +W+   G++  +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 ERLVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLER+  +LQ   N
Sbjct: 184 -RGDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G +   +  +         SAYP + Q + +I+  L  E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFL 362

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  +++ + K    +++G  AF LYDTHG PL++ Q+I     L  +D+  
Sbjct: 363 KTLDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGFPLELTQEIAEENNLT-VDVEG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F + +E Q+   R     +   T +     L E   AT+FIGY                 
Sbjct: 422 FQKQMEIQQQGGRGAHETIDL-TVQGSLDKLAEHIHATEFIGYS---------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ V+ ++  G + EEA +G +V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 465 -------QATATAKVEVLLVDGVVQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           GI +Q+ DV+K+++  FVH   +ERG LR   ++   ID   RR+   NH+ATHLL  AL
Sbjct: 518 GIVVQVEDVKKESD-FFVHFGRIERGTLRVGDNVTAQIDRAGRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            TI+   +SQ GS ++ D LRFD    + +T  E++ +E+ +N  IA+       ++   
Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFPG-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  + QL   
Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751

Query: 776 KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L +   D          D   +   +  VD + LKS  + L +KI +G ++L  + +
Sbjct: 752 KGQLAIAKSDSLLQTADTCGDYKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGGG GRP++AQ+GG + +K   A+  
Sbjct: 812 ADKVSLVAAFSPEVNKKGLQAGKFIGAIAKICGGGGG-GRPNLAQAGGRDASKLPAALEQ 870

Query: 892 VASFLK 897
             S LK
Sbjct: 871 AQSELK 876


>gi|329116323|ref|ZP_08245040.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906728|gb|EGE53642.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 872

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/915 (35%), Positives = 494/915 (53%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAEIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y  D +++  W  + G+    +I +   +NFW +   GP GP +EIFFD+G
Sbjct: 121 PKEKLYMTYYPADTDSYNRWIAL-GVEPSHLIPL--EENFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF    +    E   LP  +IDTG GLER
Sbjct: 177 ESFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E ++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIREVETLSGKTYDQDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  +  +  L+  +   M S YPE+++ K  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGINQTFLYKLVMVVGQIMESYYPEILEKKDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDIFKLYDTYGFPVELTEEMAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +L      ++F  YD        
Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQN--ETLANITELSEF-NYD-------- 464

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             +   +  IV   E  E    GQ   +VFDQTPFYAE GGQ+ 
Sbjct: 465 ---------------REKLEGQLSVIVVDNERSEAVSEGQ-ALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G  + D   +   + DVQK   G  +H   V    L      +L +D++ R  +  NH
Sbjct: 509 DHGVILNDNGEVIANVIDVQKAPNGQALHTVEVL-ANLSVGTKYMLKVDHKRRFAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H +Q GS    + LRFD TH + +T+ EL+ IE+ VN  I   +
Sbjct: 568 TATHLLHAALHNIIGKHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIWNAI 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + E A + GA AL G KY   VRVV +     G +S  LCGGTHVS+T EI L
Sbjct: 628 KVQTIESDVETAKSMGAMALFGEKYGKLVRVVVI-----GDYSVELCGGTHVSNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+T ++A      +++ LK +AS +K  Q   V  +V  + E+
Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKQAFEAYRKEEDALKEIASTIKAPQIEQVPTKVASLNEQ 742

Query: 767 YRKLQLI--HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R+LQ      K K            + +VN  ++I ++V   D+  L++  D  ++K  
Sbjct: 743 VRELQKEVAELKEKAAAAQAGDVFKDVKEVNGHTYIATQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S I++LV    EK   ++   +++L    +A ++ +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDILILVAAIGEKVNVLVASKSKEL----HAGNVIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K +  +  V + L
Sbjct: 858 ASKINDLLNEVPNQL 872


>gi|299782999|gb|ADJ40997.1| Alanyl-tRNA synthase [Lactobacillus fermentum CECT 5716]
          Length = 882

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/915 (34%), Positives = 496/915 (54%), Gaps = 63/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  +L+FF ++GH  +PS SL+P NDPTL++ NSG+   KN F G+  P    +T
Sbjct: 8   NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+ AI  AW+LLT  + F  
Sbjct: 68  SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLYIT Y +D +A + W   +G+  D ++     DNFW + + GP GP +E+F+D+G
Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           + +   P   P      E ERY+EIWN+VF QF    +     LP  +IDTGMGLER+ +
Sbjct: 180 QEMNNLPEDDPESYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERVVS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILP 292
           + +    N++ DLF  LI+  E  +  K  G    + V  ++I DH+RS +F I DG LP
Sbjct: 240 IFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGALP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYV+RR++RR++   + LG  EP +  ++P +   M   YP++++    I   + 
Sbjct: 300 SNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASVIS 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           SE++RF     RGL LL+ V+    +   + ++G  AFKLYDT+G P+++ ++     GL
Sbjct: 360 SEEDRFSADFKRGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADEGL 419

Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
             +D   F  A+ EQ++RAR A  +  G G    +W +  ++   ++++GY  L      
Sbjct: 420 T-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGYTDLVVDN-- 473

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                               + V  +   G+  ++A  GQ V+V+FDQTPFYAE GGQ+ 
Sbjct: 474 --------------------AKVIGLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQVA 513

Query: 530 DTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           DTG  I +  ++   + DVQ       +H   +    ++      L +D     ++  NH
Sbjct: 514 DTGQVIDNYGKVVATVKDVQHAPHQQNLHTLELT-APIKKGARYKLVVDRARHLKIEKNH 572

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LG H  Q GS +    LRFD  H   +T  +LK +ED VN+ I + +
Sbjct: 573 TATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWKEI 632

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV T   + + A   GA AL   KY D+VRVV +     G  ++  CGG HV +T EI L
Sbjct: 633 PVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEIGL 687

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IVSE  + AG+RRIEA+T   A + +  + + L  +A+ LKV+Q   V  RV E+ ++
Sbjct: 688 FKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQDQ 747

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            ++    +   + +L  +          + A    ++  +      +L+ + D  ++K  
Sbjct: 748 LKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMADDWRQKDY 807

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L   + + KA++L+ V + L     A DL +  A  + GG GGGRP +AQ+GG N
Sbjct: 808 SDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAINGG-GGGRPTLAQAGGKN 865

Query: 882 GNKADQAIAGVASFL 896
                +A+   + F+
Sbjct: 866 PAGISEALKLASQFM 880


>gi|121612666|ref|YP_001000209.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005165|ref|ZP_02270923.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205830017|sp|A1VYL8|SYA_CAMJJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|87250291|gb|EAQ73249.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 842

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/896 (38%), Positives = 509/896 (56%), Gaps = 60/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
            D QK      ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 508 LDTQKFFN---LNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +  + LRFD TH K +   EL+SIE  VN++I  +   +   M  E+A  S
Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RR
Sbjct: 625 GAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A   +  Q E+L  +   LK +  +++  V+++  E           K +L 
Sbjct: 679 IEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEI-------LSLKNELK 729

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +     ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V
Sbjct: 730 NSSKTELDSKNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +       A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 KDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|268318981|ref|YP_003292637.1| hypothetical protein FI9785_490 [Lactobacillus johnsonii FI9785]
 gi|262397356|emb|CAX66370.1| alaS [Lactobacillus johnsonii FI9785]
          Length = 882

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/918 (36%), Positives = 508/918 (55%), Gaps = 65/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGQCLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F           
Sbjct: 416 GLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ+
Sbjct: 462 ------------EYGTLEEKHAKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     L  ++TDVQ       +H   V    L      VL +D + RR L  N
Sbjct: 509 ADHGEILNQNGELVARVTDVQHAPNDQNLHFVDVI-LPLEKGQEYVLKVDQKRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I + 
Sbjct: 568 HTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWEE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I 
Sbjct: 628 IPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I +
Sbjct: 683 MLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + R  Q    + K Q+N        + I  V  ++ I ++ D     +L+ + D  +   
Sbjct: 743 DLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAAQADVEGMNDLRELADNWKSSN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L      K   V+ +  + +     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 803 KSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFLKK 898
           N      AIA V   +++
Sbjct: 862 NPAGLKDAIAKVLQEVEE 879


>gi|86153544|ref|ZP_01071748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843270|gb|EAQ60481.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 842

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/896 (38%), Positives = 510/896 (56%), Gaps = 60/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
            D QK      ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 508 LDTQKFFN---LNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  S
Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RR
Sbjct: 625 GAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A   +  Q E+L  +   LK +  +++  V+++  E           K +L 
Sbjct: 679 IEAVVSKAALEFVKNQLEELSKVKDELKNN--DILNGVKKLKNEI-------LSLKNELK 729

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +     ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V
Sbjct: 730 NSSKTELDSKNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +       A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 KDAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|237785598|ref|YP_002906303.1| alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758510|gb|ACR17760.1| Alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 886

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/917 (35%), Positives = 491/917 (53%), Gaps = 57/917 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
              IR  F E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   T+
Sbjct: 3   THEIRERFTEHFVKAGHTSVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFNTATS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118
           +QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW+LLT       F
Sbjct: 62  IQKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWELLTSSVDDGGF 117

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RL++T+Y +D+EA  +W    G+  ++I R+   DN+WSM   GPCGP SEI++D
Sbjct: 118 GLDPDRLWVTIYQDDDEAGDIWHDKIGIPRERIQRLGMADNYWSMGIPGPCGPSSEIYYD 177

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLER 232
           +G    G   G   +  RYIEIWNLVFM+ E+     +        LPK +IDTG+G+ER
Sbjct: 178 RGPEY-GKEGGPVVDDTRYIEIWNLVFMEKERGEGTGKENFEILGPLPKKNIDTGLGIER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
           +A +LQ   N Y+ DL + +I  +E++TG  Y     + V  RVI DH R++  LI DG+
Sbjct: 237 VACILQGVDNVYETDLLRPVIDVAEELTGAPYGARHADDVRFRVIADHCRTALMLILDGV 296

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+      I  T
Sbjct: 297 APSNEGRGYILRRLLRRIVRSARLLGATHETMERFMETVRRTMTPSYPEIEDNWERIRST 356

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             +E+  F  TL+ G  L   +   L    + +  G  AF L+DTHG P+D+  ++   +
Sbjct: 357 AVAEERAFLATLESGEKLFTTIAEDLKARGETVFPGSDAFILHDTHGFPVDLTAEMANEQ 416

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D  +F++ +++Q++RA+A +     G      +       AT F GYD L     
Sbjct: 417 GLT-LDRDAFDRHMQDQKARAKADNRAKKHGHANLSVYRPFVDNHATVFTGYDTLED--- 472

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  +  +V  G++VE+A  G  V+V+ D+TPFYAE+GGQ+
Sbjct: 473 --------------------EGTILGMVSNGQLVEKATEGDHVDVILDRTPFYAESGGQM 512

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G     G RL++ DVQK  + ++VH   V  G +   M +   +D Q R      HS
Sbjct: 513 ADHGELSTAGARLKVNDVQKIGKKLWVHKTEVTGGEIAVGMKVEGKVDPQWRHAARQAHS 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THL+H AL  +LG    Q GS   P  LRFD   ++P+T  +LK I+D  N  +  +  
Sbjct: 573 GTHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNFNRPLTDGQLKDIQDIANSAVDADYT 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + ++A   GA AL G  Y D VRVV +    GG  S  LCGGTHV    ++  +
Sbjct: 633 VNTIETSLDEAKKMGALALFGQSYGDWVRVVEI----GGPFSMELCGGTHVDHASQVGPI 688

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++ ESS+ +G RRIEA TG  +  +L  Q   L ++A+ LK    +V  RV+++     
Sbjct: 689 AVLGESSVGSGARRIEAYTGMDSFRYLAQQQSTLTTVATSLKAPADDVPERVDQLAARLH 748

Query: 769 KLQLIHA---KRKLQLNVED--LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS- 822
             +   A   ++ LQ   ++      ++ +V  ++  +S+V++K+L+ +   ++ ++ + 
Sbjct: 749 DAERAVARAHQQALQSKADEFVAHAQRLNNVTVVAESVSDVEAKDLRPMALDVRNRLGNE 808

Query: 823 -GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +++L+  + +K   V+    +   +  NA  L +   + +  G GGG+P MAQ  G +
Sbjct: 809 PAVVVLISSTGDKVPFVVSANEQATGNGINANSLVKTIGQSVN-GRGGGKPDMAQGSGSD 867

Query: 882 GNKADQAIAGVASFLKK 898
                 A+  V   LKK
Sbjct: 868 ATGISHALDAVLDDLKK 884


>gi|169824323|ref|YP_001691934.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|205830092|sp|B0S104|SYA_FINM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167831128|dbj|BAG08044.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 873

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 518/909 (56%), Gaps = 53/909 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKELVGEVN-KTVDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F + +EEQ+ RAR        G +    +   E+   T+F GY+ L+           
Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EELPETKFDGYNSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   +V D T FY E GGQ+GD G   
Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG+    +L  +D  + ++   LK S +  +  R+E   EE + L+   
Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDRLIDNVKHSLKASNEDEITRRIEMNTEEIKGLKKKL 741

Query: 775 A---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                + L  NV+ +     ++      +  +S +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDGVVILA- 800

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 801 NSDESKVSFIALVTDSSVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAGVASFLK 897
           +      +K
Sbjct: 860 LQKGIETVK 868


>gi|264678535|ref|YP_003278442.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209048|gb|ACY33146.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 834

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/875 (40%), Positives = 508/875 (58%), Gaps = 56/875 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTNSGMV FK++F G +K  Y   T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+
Sbjct: 1   MFTNSGMVQFKDVFLGTDKRPYNRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNW 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFK+ +I+  W+LLTK F L   +L  TVY ED+EA+ +WK + GL A++IIRI  
Sbjct: 61  SFGDYFKKESIEWGWELLTKVFGLPAEKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGD 120

Query: 157 N-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQF 208
           N       DNFW MA+TGPCGPCSEIF+D GE I GG PGS  E+G+R+IEIWN VFMQF
Sbjct: 121 NKGGKYKSDNFWMMADTGPCGPCSEIFYDHGEHIAGGPPGSPDEDGDRFIEIWNHVFMQF 180

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268
           + +       LP   +DTGMGLER+A +LQ   +NY+IDLF+ LI+A+ + T  +     
Sbjct: 181 DMKEDGSVVKLPAPCVDTGMGLERLAAILQHVHSNYEIDLFQALIKAAGRETSTEDLST- 239

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
             + +VI DH+R++SFL++DG++P+NEGRGYV RRI+RRA+ +   LG   P    L+  
Sbjct: 240 -PSLKVIADHIRATSFLVSDGVIPSNEGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVAD 298

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
           L  +MG AYP+L + +  I   L++E+ERF +TL  G+ +LD  L+  G  ++L GDVAF
Sbjct: 299 LVVQMGDAYPKLKEQEAHITSVLKAEEERFFETLANGMEILDSALA--GDVKVLPGDVAF 356

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           KL+DT+G PLD+  D+   RG+  +D   FN A++ Q+  ARA           K+  +L
Sbjct: 357 KLHDTYGFPLDLSNDVARERGVT-VDEAGFNAAMQHQKETARAAGK-------FKMDRAL 408

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +    A  F GYD L                         ++ + A+   G  V E  +G
Sbjct: 409 EYTGDANVFTGYDKLA-----------------------EAAKIVALYADGVSVNELKAG 445

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q   VV D TPFYAE+GGQ+GD G     G R  + D  K    +F HH ++E G L+  
Sbjct: 446 QSGVVVLDTTPFYAESGGQVGDQGVIAAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVG 505

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   +D   R     NHS TH++H AL  +LG HV Q GS +  +  RFD  H+ P+T
Sbjct: 506 DAVEAQVDTAVRAATMRNHSVTHIMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPVT 565

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++ IE  VN  +  N     R+M+ E A  +GA  L G KY + VRV+ +       
Sbjct: 566 AEQIREIEARVNAEVLANTATDARVMDIESAQKTGAMMLFGEKYGETVRVLDIGS----- 620

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHVS TG+I L  +V ES + AG+RRIE ITG+ A ++L   +  +   A+ 
Sbjct: 621 -SRELCGGTHVSRTGDIGLFKVVGESGVAAGVRRIEGITGENALAYLQSLESTVDQAAAA 679

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHI---ISE 803
            K     +  R+    ++ + L+   A  K KL  +  D    + ADVN +  +   +  
Sbjct: 680 FKAPAAELTNRIGGALDQIKALEKEIAALKGKLASSQGDELATQAADVNGVKVLAAKLEG 739

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D+K L+  MD L+ K+ + +I+L  +  + K  +   VT+    +  A +L    A+ +
Sbjct: 740 ADAKTLRDTMDKLKDKLGAAVIVLAAVDGD-KVQLAAGVTKAETAKVKAGELVNFVAQQV 798

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG GG G+P MA +GG +      A+A V +++ +
Sbjct: 799 GGKGG-GKPDMAMAGGTDAAAVPAALASVQAWVAE 832


>gi|303233900|ref|ZP_07320549.1| alanine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302494825|gb|EFL54582.1| alanine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 873

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/903 (36%), Positives = 515/903 (57%), Gaps = 53/903 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKELVGEVN-KTVDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F + +EEQ+ RAR        G +    +   E    T+F GY+ L+           
Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFGGYNSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   +V D T FY E GGQ+GD G   
Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG+    +L  +D  + ++   LK S +  +  R+E   EE + L+   
Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDSLIDNVKRSLKASNEDEITRRIEMNTEEIKGLKKKL 741

Query: 775 A---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                + L  NV+ +     ++      +  +S +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDGVVILA- 800

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 801 NSDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAG 891
           +  
Sbjct: 860 LQK 862


>gi|169629935|ref|YP_001703584.1| alanyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|169241902|emb|CAM62930.1| Alanyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 891

 Score =  833 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/926 (34%), Positives = 487/926 (52%), Gaps = 65/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYNTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIRLAWTLLTNPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L+ TVY +D+EA  LW++++GL  D+I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPEKLWATVYLDDDEAIGLWQEVAGLPLDRIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G      G P ++E+  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEYGIEGGPEANED--RYIEIWNLVFMQNERGEGTSKTDFEILGPLPRQNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I     V    Y      + V +RVI DH R+++ +I
Sbjct: 234 VERIACLLQGVDNVYETDLVRPVIDCVAAVAPRGYGQGNHEDDVRYRVIGDHARTAAIII 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGYVLRR++RR +   +LLG  +P+M  L+  +  EMG +YPEL+     
Sbjct: 294 GDGVSPGNEGRGYVLRRLLRRIIRSTKLLGVEKPMMGELMAVVRDEMGPSYPELVTDFER 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L +             L+G  AF L+DT+G P+++  ++
Sbjct: 354 ISRIAVAEETAFNRTLASGSKLFEDAADKTKTAGKSTLSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL+ +D   F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 AAEAGLS-VDEKGFRELMNEQRQRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDELD 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   ++ +  I   G  V  A +G + E+V D+TP YAE+
Sbjct: 473 S-----------------------AARILGIFVDGARVPVASAGSEAEIVLDRTPLYAES 509

Query: 525 GGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           GGQ+ D G   GDG     + +++DVQK A+ +FVH   VE G       +V ++D   R
Sbjct: 510 GGQIADVGSIRGDGANATSQAKVSDVQKIAKTLFVHKVTVESGEFVEGDQVVASVDPHWR 569

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              +  HS TH++H AL  +LG +  Q GS   P  LRFD +    ++ A+ + +ED  N
Sbjct: 570 HGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGALSEAQRQEVEDVAN 629

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +  N PV T + + + A + GA AL G  Y DRVRVV +    GG  S  LCGGTHV+
Sbjct: 630 KAVEANYPVNTFVTDLDQAKSMGAMALFGENYGDRVRVVDI----GGPFSLELCGGTHVA 685

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            + +I  + ++ ESS+ +G+RR+EA  G  A  +L  +   + +L+S LKV    V GRV
Sbjct: 686 HSSQIGPVTLLGESSVGSGVRRVEAYVGLDAVRYLSKERALMAALSSSLKVPSEEVPGRV 745

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMD 814
             + E  +  +    + +L      +     +  +I  V  ++H +     + +L+S++ 
Sbjct: 746 ATLVERLKVAEKELEQTRLASVKASIATLVDNAERIGSVTVVAHRLPDGTGAGDLRSLVG 805

Query: 815 ALQKKIQSGIIMLVGI-SKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
            ++ ++ S   ++  I + E     ++ V +   D    A DL       +  G GGG+ 
Sbjct: 806 DIRGRLGSDPAVVALIAAGEGSVPFVVSVNQAAQDAGLRANDLVGAIGPAV-DGRGGGKA 864

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
             AQ  G +    D A+  + + +++
Sbjct: 865 DTAQGSGKDPAGIDAALQALRAQIRR 890


>gi|55981800|ref|YP_145097.1| alanyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|62296736|sp|P74941|SYA_THET8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55773213|dbj|BAD71654.1| alanyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 882

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/919 (37%), Positives = 508/919 (55%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNK----QERFILPKMSIDT 226
           SEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+SR+RA             ++   L  + GAT+F+GY+ L 
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   + + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703
            + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  TG
Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQ 817
             E ++ +      K +L    L         +   + +    +  +D+K L+   D L 
Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK-------VLGGGGGGG 870
            +     ++L         +VL +  +       A  L R  A+         G      
Sbjct: 812 ARGADVALVL-----SGGQAVLKLSPKAQGMGLEAGALFRALAEKAGGRGGGKG------ 860

Query: 871 RPHMAQSGGPNGNKADQAI 889
              +AQ GG +  KA +A+
Sbjct: 861 --ALAQGGGLDPRKAREAL 877


>gi|170078279|ref|YP_001734917.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|205830236|sp|B1XP68|SYA_SYNP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169885948|gb|ACA99661.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 877

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/908 (37%), Positives = 510/908 (56%), Gaps = 50/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           + + S IR+ FLEFF +  H +LPS+SL+P  DPT++ T +GM+PFK IF GQ+      
Sbjct: 7   VLSGSEIRSKFLEFFNQRQHPILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQDAPSPR 65

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F L
Sbjct: 66  ATTSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D + + ++V+ ED+EAF++W+   G++  +IIR+   DNFW    TGPCGPCSE+++D  
Sbjct: 122 DPKNIVVSVFREDDEAFEIWRDKVGVNPKRIIRMGEEDNFWKSGPTGPCGPCSELYYDFK 181

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
             + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+ 
Sbjct: 182 PEL-GDDNIDLEDDTRFIEYYNLVFMQYNRDAEGHLTPLQNKNIDTGMGLERMAQILQQV 240

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGR 297
            NNY+ DL   +I+ + +  G+ YE  +    V+ +VI DH+RS   +IADGI  +N  R
Sbjct: 241 PNNYETDLIFPIIETAAKAAGIHYEKADEKTKVSLKVIGDHVRSVVHMIADGITASNTDR 300

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR + + RL+G     +  +         +AYP   + +  I++ L  E+  
Sbjct: 301 GYVLRRLIRRVVRHGRLIGIDGNFINQVAETAIQLSEAAYPNTRERESFIKQELEREENN 360

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL+RG  LL  +++   +++ ++G  AF L+DT G P ++ Q+I    GL  +D   
Sbjct: 361 FLKTLERGEKLLADIIA--KEEKQISGVDAFTLFDTFGFPFELTQEIAEENGLT-VDAEG 417

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           +   +++Q+ R++A    +   T +     L E    T F+GY  L+             
Sbjct: 418 YQAEMKKQQERSKAAHETIDL-TVQGSLDELAEHIHPTAFLGYTDLQSQV---------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++A++  G  VE A +G  V+++ +QTPFYAE+GGQ+GD G   GD
Sbjct: 467 -------------KIEAVLVDGHRVETAEAGVVVQLICNQTPFYAESGGQIGDRGYFSGD 513

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + ++I DVQK++ G FVHH  VERG L    ++  TID   RR+   NH+ATHLL  AL
Sbjct: 514 QLVVRINDVQKES-GFFVHHGKVERGSLTVGDTVNATIDRACRRRAQANHTATHLLQAAL 572

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS +  D LRFD    + +T+AEL  IE  +N  IA+       +M   
Sbjct: 573 KNIVDDSISQAGSLVDFDRLRFDFNCPRALTAAELTQIEAQINTWIAEAHEGQVAVMPIA 632

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY + VRVV          S  LCGGTHV +T EI L  I+SE+ I 
Sbjct: 633 EAKAKGAVAMFGEKYGEEVRVVDFPG-----VSMELCGGTHVKNTAEIGLFKIISETGIS 687

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +GIRRIEA+ G     +L  +D+ +K L    K     +  RVE I  E R  Q    K 
Sbjct: 688 SGIRRIEAVAGPAVLEYLKVRDQVVKDLGDKFKAKPEEITERVENIQAELRNTQKELEKV 747

Query: 778 KLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L +            + +   +   + ++D+K L++  + LQ+K+    ++L    +
Sbjct: 748 KAELAIAKSEALVSQAETVGEFQILVENMGDLDAKALQTAAERLQQKLGEAAVVLGSTPE 807

Query: 833 EKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + K S++   +E +    +  A       AK+ GGGGG GRP++AQ+GG + +K  +A+ 
Sbjct: 808 DGKVSLVAAFSEGIYKGKKVQAGKFIGGIAKLCGGGGG-GRPNLAQAGGRDASKLPEALH 866

Query: 891 GVASFLKK 898
                L++
Sbjct: 867 TAKQQLRE 874


>gi|189485045|ref|YP_001955986.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|205830280|sp|B1GZ43|SYA_UNCTG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170287004|dbj|BAG13525.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 877

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/904 (37%), Positives = 502/904 (55%), Gaps = 44/904 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S IR  FL FF+ +G  ++PS SLIP  D TL+FT++GMV FK  F GQ K  +   T+
Sbjct: 5   SSKIRAEFLGFFKNSGCAVVPSDSLIPAGDKTLLFTSAGMVQFKQHFLGQSKDSFTRATS 64

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC R     +D+D VG T RH TFFEMLGNFSFG YFK+ A   AW+ LTK   L + 
Sbjct: 65  CQKCFRT----SDIDQVGTTARHLTFFEMLGNFSFGDYFKKEAAAWAWEFLTKNMSLPKD 120

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LYIT+Y +D+E   +WK I+   A+KII++    NFW+M ETGPCGPCSEI  D G+  
Sbjct: 121 KLYITIYKDDDEVAGIWKNIA--PANKIIKMDEKTNFWNMGETGPCGPCSEILIDLGQET 178

Query: 184 PGGLPGSSEEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P    E   +RY+EIWNLVF QF++Q       LP+ +IDTGMGLER++  +  + 
Sbjct: 179 GCGSPACCPECNCDRYLEIWNLVFTQFDKQPDGSLKNLPRKNIDTGMGLERLSATVNGRK 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           N +D DLF  +++ + ++  +K EG+NI   R+I DH R+ +FLI+DGILP+NEGRGYVL
Sbjct: 239 NVFDTDLFMPVMENAAEILKIKNEGSNISKLRMIADHSRAITFLISDGILPSNEGRGYVL 298

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+   +  GY +P +  L+  +   M  AYPEL      I   +++E+E+F +T
Sbjct: 299 RRILRRALRQGKFYGYNKPYINELVSDVLKIMEGAYPELSSKLSNIRSIVKTEEEKFLET 358

Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           L+ G  +L  +++        I++G   FKLYDT+G P D+ +++    GL  ID   F 
Sbjct: 359 LESGSEILSSLINSYKSKDINIISGKDVFKLYDTYGFPHDLTKEMAFENGLE-IDEDKFK 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
              ++ + ++R    G G       +  L++K G T F GYD                  
Sbjct: 418 FEQKKAQEKSRVAWCGSGERDI-TFYSILRKKTGDTVFTGYD------------------ 458

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V A+++ G  + E  +G   E++   + FYA++GGQ  D G    +  
Sbjct: 459 -----NYASESRVLALIKDGSEISELKTGDNGEIILSHSSFYAQSGGQSDDKGKIANNSF 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              +  + K A  +FVH   V +G+++   ++   ID + R+Q++ +H+A HLLH AL  
Sbjct: 514 ESIVEYIFKPAGNLFVHKVKVLKGLIKINDAVSTIIDIERRKQIARHHTAAHLLHKALRE 573

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
             G H++Q GS +  D  RFD TH   +   +L  IE  VN II  N  V    M    A
Sbjct: 574 AFGGHITQAGSLVARDYFRFDFTHFSALKKDDLIKIEKRVNSIIRLNSEVCIETMAIAKA 633

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
             +GA AL G KY D VR V ++ E G G +S  LCGGTHVS TG+I +  I+SESS  A
Sbjct: 634 RNAGAMALFGEKYGDEVRTVLIKNESGDGNYSMELCGGTHVSRTGDIGIFKIISESSAAA 693

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G  A ++++ ++  +   +  L  S+  +V +  +   +Y+KL+      K
Sbjct: 694 GVRRIEAVAGIAAENYILDEEAVIIKTSKILNASKEELVNKAHKYTSDYKKLENEFKSLK 753

Query: 779 LQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             L   ++        KI  +NF+S I  + D K L+++ D L++K++S  ++L+    E
Sbjct: 754 SSLISGEIDSYAKEVKKINGINFLSVIADKADIKALRTISDQLKEKLKSA-VLLIVSKNE 812

Query: 834 KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +AS ++  T D +    NA  +A+  A  +  G  GG+P  AQ G  + +  + A+   
Sbjct: 813 DRASFILSATADCVQKGINAGKIAKAFAASIN-GSAGGKPDFAQGGSKDLSNLNDAVKNA 871

Query: 893 ASFL 896
             ++
Sbjct: 872 HKYI 875


>gi|302533385|ref|ZP_07285727.1| alanyl-tRNA synthetase [Streptomyces sp. C]
 gi|302442280|gb|EFL14096.1| alanyl-tRNA synthetase [Streptomyces sp. C]
          Length = 889

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/923 (35%), Positives = 508/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGETKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA  +W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYLDDDEAETIWRDVIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +++ + ++TG++Y       V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMEKATELTGVRYGAAKGSDVSMRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLIDVVIDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K +  G  +LD  ++        +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKAVKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY   +G
Sbjct: 415 EQGLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGYATNQG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR ++
Sbjct: 511 GQLADQGRIKLDTGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +ND+++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTSQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIASML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           D+  ++ ++ +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLASNAQDIRGVALVVGQVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ     ++ L  ++ ++  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGDRPAVVALFTVANDRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +AIA V   + +
Sbjct: 865 QGGGQNPGAVPEAIAAVERLVAE 887


>gi|227833217|ref|YP_002834924.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184203|ref|ZP_06043624.1| alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454233|gb|ACP32986.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 895

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/928 (35%), Positives = 489/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--Q 59
                IR  F + F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFANG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTNSVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TVY +D+EA  +W    G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGLGLDPERLWVTVYLDDDEAADIWHDKIGVPRERIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERF---ILPKMSIDTGM 228
           I++D+G    G   G  E+ +RY+EIWNLVFMQ E+     K        LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GQDGGPVEDDDRYMEIWNLVFMQNERGEGIGKGNFEIIGELPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I  +E++TG KY  +    +++  RV+ DH R+   
Sbjct: 235 GIERVACILQGVDNVYETDLLRPVIDVAEELTGAKYVPDAPKEDLIRFRVVADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+ + +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGETMERFMNTIMDTMTPSYPEIAENR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  ++ L         ++L+G+ AF+L+DT+G P+
Sbjct: 355 ERILRVALAEEKAFLKTLESGTKLFDEAVTELKNTSRAATPKVLSGEKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  F+ A+ EQR RA+A +     G  +   +        T F 
Sbjct: 415 DLTLEMAQEAGLT-VDMEGFDAAMGEQRRRAKADNQAKKHGHADLSLYREWVDNHPTLFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY+ L                          + V  +V+ GE V E  +G  VEV+ DQ+
Sbjct: 474 GYETLES-----------------------EAKVLGLVRDGEKVSEVQAGDTVEVILDQS 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAEAGGQ  D G  I     L++ DVQK  + ++VH A V  G L     +   +D Q
Sbjct: 511 PLYAEAGGQTADRGRIIAGETLLEVNDVQKIGKKLWVHKATVTAGGLELGNGVTAAVDEQ 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      HSATHL+H AL  +LG    Q GS   P  LRFD  ++  +T  +L  I   
Sbjct: 571 WRHGAVQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTDQLTQEQLDEIALV 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  + Q+ PV T   + + A   GA AL G  Y   VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAVDQHFPVNTIETSLDKAKEMGAMALFGENYGSEVRVVEM----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +T EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  
Sbjct: 687 VKNTAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPE 746

Query: 759 RVEEIWEEYRKLQLIHAKR-KLQLNVEDLS----CHKIADVNFMSHII-SEVDSKELKSV 812
           R+ ++ E+ +  +   A+  K QL  +          I D   ++  +   V+  +L+++
Sbjct: 747 RIAQLTEKLKAAEKQIAELHKAQLMSQTAEMISTAKTINDFTLVAVKLPKGVNGGDLRTL 806

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              ++ ++     +++L   ++  K   ++  T+   +R   A DL +L +  +  G GG
Sbjct: 807 ASDIKNRLGDVAAVVVLASENEGGKMPFIVGATKAANERGVKAGDLVKLVSGYV-DGKGG 865

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P MAQ  G N      A   V   L+
Sbjct: 866 GKPDMAQGSGVNIEGLQAAFDAVRDELE 893


>gi|257439376|ref|ZP_05615131.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257198251|gb|EEU96535.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 886

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/917 (35%), Positives = 508/917 (55%), Gaps = 57/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LT  +   
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + +L+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW     GPCGPCSEI+FD+
Sbjct: 120 IPKDKLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHGS-GPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E + G  Y  N  + ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QGVGNLFEVDTVQSVLHHVEHIAGKTYGENAKDDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG + P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K    +L G   FKL DT G PLD+ ++I   +G+  I
Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHQHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F+  +++Q+ RARA  L    SG +E ++  L      T F GY+ L         
Sbjct: 418 DEDGFHAEMKKQKERARAERLKKNISGWSEDLFGGL--TVEPTVFTGYETLND------- 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQL 528
                           + +V A+  +  + +   + ++    V VV D+TPFYAE GGQ+
Sbjct: 469 ----------------TGVVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQV 512

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G    L++ DV+K  +G +VH  ++E GI++    L   +D + R  +  NH+
Sbjct: 513 ADNGLLTGPECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLNAQVDKEYRMSVCRNHT 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG HV Q GS    +   FD TH   +T  EL  ++  VND I +++ 
Sbjct: 573 ATHLLQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMN 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M  E+A   GA AL G KY   VRVV++E       S+  CGGTHV +T +I   
Sbjct: 633 VTVKEMPIEEAKKLGAMALFGEKYGKVVRVVNIEG-----WSTEFCGGTHVKNTAQIGGF 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSESS+ AGIRRIEA+TG+        Q+  L ++A+ LK +   ++  R E +  E 
Sbjct: 688 KIVSESSVAAGIRRIEAVTGRNLLVRANLQEAMLHTVANTLKANNITSLPIRAEAVMAEN 747

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + +     + K ++    +     +  +++ V   S   +      L+ + D+++ K  +
Sbjct: 748 KAMSKELEEIKAKVAASKVNSLFDNAEEVSGVKIASAYFTGTTGDTLRGMCDSIRDKAVN 807

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            ++ ++    E K ++ + V +   ++   A  L +  + + GG GG G+P  A +G  +
Sbjct: 808 PVVAVLVGKAEDKVTMAVTVNKLAQEKGLKAGVLVKEISAIAGGKGG-GKPDFAMAGLKD 866

Query: 882 GNKADQAIAGVASFLKK 898
             K D+A+A V   ++K
Sbjct: 867 ETKIDEALAAVKGIVEK 883


>gi|157164208|ref|YP_001467070.1| alanyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|205830011|sp|A7ZE62|SYA_CAMC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|112800400|gb|EAT97744.1| alanyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 852

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/900 (38%), Positives = 518/900 (57%), Gaps = 54/900 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M N+  IR  +L+FF+  GHE++ S+ L+P ND TL+FTN+GMVPFK+IFTG+       
Sbjct: 1   MQNL-DIRKAYLDFFKSKGHEVVASAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58

Query: 61  V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           + T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ +T+   
Sbjct: 59  IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKEAIAYAWEFVTEVLK 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + +LY+TV++ D EAF++W   + ++ ++I R   +DNFW M +TGPCGPCSEIF+DQ
Sbjct: 119 LPKDKLYVTVHESDYEAFEIWS--THIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176

Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G E           +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  +LQ
Sbjct: 177 GAEHFNTPEDYMGGDGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAILQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +NYD  LF  LI    ++ G  Y   +  ++RVI DH+RS +FL+A G     EGRG
Sbjct: 237 GKFSNYDSTLFMPLISEVAKLCGKPYVYESGASYRVISDHIRSVTFLLAQGTTFDKEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA+ +  LLG  EP M  L+  +C  MG  Y  L   K  ++E ++ E+ERF
Sbjct: 297 YVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCELMGGHYTYLNDKKAAVKEQIKLEEERF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             T+  GL L +  L +    EI +G+ AFKLYDT G PLD+  D+L  +GL  +D   F
Sbjct: 357 LATIASGLELFESELKNTK--EIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEARF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++ + EQ++RA+A   G G  + +  +  L EK+G  +FIGY+ L+              
Sbjct: 414 DELMSEQKARAKAAWKGSGDKSAKGDFKELLEKFGENKFIGYEELKSK------------ 461

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     S I+  + ++ + ++   +G++  V+FD TPFYA++GGQ GD G  +G  
Sbjct: 462 ----------SKILALLDEEFKNIDGLDAGKEGWVMFDVTPFYAQSGGQCGDNGKIVG-- 509

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  + D +K   G+ +         L+    + L +    R + + +HSATHLLH AL 
Sbjct: 510 -KADVLDTEK-FHGLNLSLVK-TSAALKVGDEVELEVGSD-RAETARHHSATHLLHAALR 565

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++G+H++Q GS +  D LRFD +H K ++  E+  +E+ VN+ I       T++M  E+
Sbjct: 566 AVVGTHIAQAGSNVEADRLRFDFSHPKALSGEEISKVENLVNEWIVNGANAKTQVMELEE 625

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A  SGA AL   KY D+VRVVS      G  S  LCGGTHV +  EI   +I  ES + A
Sbjct: 626 AKKSGAIALFNEKYADKVRVVSF-----GDVSKELCGGTHVKNIDEIGSFFITKESGVSA 680

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+  + A +       +L+ L     +     +  V+++  E + L     K K
Sbjct: 681 GVRRIEAVCSRAALNLARSFRAELEELKEE--LKSAEPLNAVKKLKGEIKGL-----KDK 733

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           L+ N ++       +VN     ++ +DS ++K+++D  + + +   I+L+ + +E K S+
Sbjct: 734 LK-NAKNSHALAFLNVNDTKLCVASIDSGDIKTLIDEFKNEHEKAAILLIQVDEEGKISL 792

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              V         A    + +A++L GG GGG+   A +GG N    + AI     + ++
Sbjct: 793 AAGVKNAP---IKAGAWVKFAAQIL-GGNGGGKDDFATAGGKNALAIEDAIRSSVEYARQ 848


>gi|302380501|ref|ZP_07268966.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311444|gb|EFK93460.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 873

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/903 (36%), Positives = 515/903 (57%), Gaps = 53/903 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  ++ IR  FL++F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKNYGLNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK  AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+++VY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKELVGEVN-KTVDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
           + F + +EEQ+ RAR        G +    +   E    T+F GY+ L+           
Sbjct: 414 VQFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFDGYNSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   +V D T FY E GGQ+GD G   
Sbjct: 462 -------------ESKVIEIYGEDE--NNLKAGQMGIIVLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + ++  +L+ +E  VND IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E++ + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIH 774
           + AG+RRIEAITG+    +L  +D  + ++   LK S +  +  R+E   EE + L+   
Sbjct: 682 VAAGVRRIEAITGRAVYKYLKERDSLIDNVKHSLKASNEDEITRRIEMNTEEIKGLKKKL 741

Query: 775 A---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                + L  NV+ +     ++      +  ++ +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDMTNKDLSSNVDSVINDAVEVNGTKVCTFELNGLDNNSFRDFGENIKSKLEDGVVILA- 800

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 801 NSDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAG 891
           +  
Sbjct: 860 LQK 862


>gi|46199782|ref|YP_005449.1| alanyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|48428512|sp|P61707|SYA_THET2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|46197409|gb|AAS81822.1| alanyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 882

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/919 (37%), Positives = 508/919 (55%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LRLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNK----QERFILPKMSIDT 226
           SEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+SR+RA             ++   L  + GAT+F+GY+ L 
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   + + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703
            + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  TG
Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQ 817
             E ++ +      K +L    L         +   + +    +  +D+K L+   D L 
Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK-------VLGGGGGGG 870
            +     ++L         +VL +  +       A  L R  A+         G      
Sbjct: 812 ARGADVALVL-----SGGQAVLKLSPKAQGMGLEAGALFRALAEKAGGRGGGKG------ 860

Query: 871 RPHMAQSGGPNGNKADQAI 889
              +AQ GG +  KA +A+
Sbjct: 861 --ALAQGGGLDPRKAREAL 877


>gi|157414790|ref|YP_001482046.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|205830015|sp|A8FKT2|SYA_CAMJ8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157385754|gb|ABV52069.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747428|gb|ADN90698.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931702|gb|EFV10657.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 842

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/896 (38%), Positives = 510/896 (56%), Gaps = 60/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEFLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+   TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DAGWVMLKNTPFYATSGGQSADSGFM----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
            D QK      ++ + V+ G  L+    +   ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 508 LDTQKFFN---LNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +  + LRFD TH K ++  EL++IE  VN++I  +   +   M  E+A  S
Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RR
Sbjct: 625 GAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A   +  Q E+L  +   LK +         +I    +KL+      K +L 
Sbjct: 679 IEAVVSKAALEFVKNQLEELSKVKDELKNN---------DILSGIKKLKNEILSLKNELK 729

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +     ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V
Sbjct: 730 NSSKTELDSKNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 -KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|262408299|ref|ZP_06084846.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294645925|ref|ZP_06723596.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294805880|ref|ZP_06764750.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353851|gb|EEZ02944.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292638725|gb|EFF57072.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294446909|gb|EFG15506.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|295086606|emb|CBK68129.1| alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
          Length = 872

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     + +++ +  I   + + ++ +K++   L+ 
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNADGLPAAVEKVLEL 869


>gi|283954216|ref|ZP_06371740.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283794234|gb|EFC32979.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 842

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/896 (38%), Positives = 507/896 (56%), Gaps = 60/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+         T+ 
Sbjct: 2   DIRKAYLDFFALKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSQDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++ G  Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIIDEIAKLCGKAYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +  E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQICLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNAK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY+                      
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYEKTE------------------- 456

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 S + A++ +  + V          V+ + TPFYA +GGQ  D+G       + +
Sbjct: 457 ----CESKILALLNEDLKEVFSLK--DAGWVMLENTPFYATSGGQSADSGFI----AKRE 506

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D QK            E   L+    +   ID + R Q++ +HSATHLLHHAL  ILG
Sbjct: 507 VLDTQKFFNLNLSFIKAGEE--LKVGDIIHAKIDTEKREQIARHHSATHLLHHALREILG 564

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           SHVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  S
Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL   KY   VRV+++        S  LCGGTHV +T +I   YI+ ES + AGIRR
Sbjct: 625 GAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIIKESGVSAGIRR 678

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A   +  Q E+L  + + LK +  +++  V+++  E   L       K +L 
Sbjct: 679 IEAVVSKAALEFVKNQLEELFKIKNELKNN--DILSGVKKLKNEILNL-------KNELK 729

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +     ++  +   +  VD+ ++K+++D  + K    +I+L+ I K++K ++   V
Sbjct: 730 NSSKTELDSKNIKGVEICVKRVDNGDIKAMIDDFKNKFNKAVILLIQI-KDEKITLAAGV 788

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +       A  L +  A++L GG GGGR   A +GG + +K D+A+      ++K
Sbjct: 789 KDAP---LKAGVLVKEVAQIL-GGNGGGRDDFATAGGKDLSKIDEALKQSLETIEK 840


>gi|288871667|ref|ZP_06118467.2| alanine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288862560|gb|EFC94858.1| alanine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 813

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/848 (38%), Positives = 476/848 (56%), Gaps = 46/848 (5%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FLEFF+  GH  + S SL+P ND +L+  NSGM P K  FTGQE P  + VTT QKC+R
Sbjct: 1   MFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITV 129
            G    D++NVG+T RH TFFEMLGNFSFG YFK  AI+ +W+ LT+   LD  RLY +V
Sbjct: 61  TG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIRWSWEFLTEVVGLDPDRLYPSV 116

Query: 130 YDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
           Y ED+EAF +W K  G++ ++I R    DNFW     GPCGPCSEI++D+GE    G PG
Sbjct: 117 YLEDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRGEKYGCGKPG 175

Query: 190 SS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
            +   E +RY+E+WN VF QFE         L + +IDTGMGLER+A V+Q+  + +D+D
Sbjct: 176 CTVGCECDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVVVQDVDSIFDVD 235

Query: 248 LFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             K L+    ++   +Y+ +    V+ R+I DH+RS +F+I+DGI+P+NEGRGYVLRR++
Sbjct: 236 TIKALLNRVAELARTEYQKDASVDVSLRLITDHVRSCTFMISDGIMPSNEGRGYVLRRLL 295

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA  + RLLG     +  L   +       YPEL + K +I + L  E+++F +T+D+G
Sbjct: 296 RRAARHGRLLGIEGRFLAELSRTVIELSKDGYPELEEKKAMILKVLTEEEDKFNRTIDQG 355

Query: 366 LVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           L +L  +   +      +L+G+ AFKLYDT+G PLD+ ++IL  +  + ID   F +A++
Sbjct: 356 LAILSEMEEQMSAAGKTVLSGEDAFKLYDTYGFPLDLTREILEEKHFS-IDEDGFKKAMQ 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR +ARA          +   +   +    T+F+GYD L                    
Sbjct: 415 EQREKARAARKTTNYMGADVTVYQSIDPALTTEFVGYDRL-------------------- 454

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S + A+  + ++VE    G+   +V ++T FY   GGQ GD G  +       +
Sbjct: 455 ---VCDSKITALTTETDLVEALTDGETGTIVTEETCFYGTMGGQQGDKGVIVSANGEFSV 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D      G   H   +++G+ +    + L +  ++R     NHSATHLL  AL T+LG 
Sbjct: 512 EDTIHLQGGKVGHVGKMKKGMFQIGDVVTLKVCEESRMNTGKNHSATHLLQKALRTVLGE 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS +  D LRFD TH   +T  E+K +E  VN+ I + L V T +M+ ++A  SG
Sbjct: 572 HVEQAGSYVDEDRLRFDFTHFSAMTPEEIKKVECLVNEKIKEALNVKTEVMSLDEAKKSG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVV +     G  S+ LCGGTH+S+TG I    I+SE+ I AG+RRI
Sbjct: 632 AMALFGEKYGENVRVVKM-----GDFSTELCGGTHISNTGVIGSFKILSETGIAAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG     +    + +L   A   K +   +  R+E + EE + L   + K K +L  
Sbjct: 687 EALTGDGLMKYYQEAETELHEAAKAAKATPQTLAARIEAMLEEIKTLHSENEKLKSRLAK 746

Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + L        +I  V  ++    +VD   L+++ D L+ K+  G+I+L  +  + K ++
Sbjct: 747 DSLGDVMDQVKEIGGVKVLAAKADDVDMNGLRNLGDQLKDKLGEGVIVLASV-LDGKVNL 805

Query: 839 LIVVTEDL 846
           +   TE+ 
Sbjct: 806 MATATEEA 813


>gi|298480309|ref|ZP_06998507.1| alanine--tRNA ligase [Bacteroides sp. D22]
 gi|298273590|gb|EFI15153.1| alanine--tRNA ligase [Bacteroides sp. D22]
          Length = 872

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     + +++ +  I   + + ++ +K++   L+ 
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNADGLPAAVEKVLEL 869


>gi|318057084|ref|ZP_07975807.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318077856|ref|ZP_07985188.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 889

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/907 (37%), Positives = 501/907 (55%), Gaps = 62/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y   G + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++
Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 HEMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV+  + +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTTADDLRRLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+          F A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNG 882
           Q GG N 
Sbjct: 865 QGGGQNP 871


>gi|302517973|ref|ZP_07270315.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426868|gb|EFK98683.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 889

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/907 (37%), Positives = 501/907 (55%), Gaps = 62/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y   G + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRVTGSTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++
Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 HEMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV+  + +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTTADDLRRLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+          F A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNG 882
           Q GG N 
Sbjct: 865 QGGGQNP 871


>gi|332176358|gb|AEE12048.1| alanyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 872

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/922 (36%), Positives = 501/922 (54%), Gaps = 76/922 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+ 
Sbjct: 1   MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI+ AW  LT+   L
Sbjct: 61  AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+TV+          D+EA   W + +  + D+II  +  DNFW M +TGPCGPC
Sbjct: 121 PKDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    +++    IEIWNLVFMQ++++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEERQAVCGRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   +Q K +NYD DLF  LI+A E ++G +Y  N    +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++  + 
Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDI 404
           LI   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ + I
Sbjct: 359 LIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  RG+  +D ++F++ ++EQ+           +      W  L E+   + F+GY+ L+
Sbjct: 419 LSERGMT-LDQVAFDKLMQEQK-----SRARQAAAIDAADWEVLDEETTESTFVGYETLQ 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                +VV  +TPFYAE 
Sbjct: 473 IETHILRYRKVADKKRSY----------------------------YQVVLAETPFYAEM 504

Query: 525 GGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G  I  DG    I D  K+   + VH  I+       +   +  +  + R   
Sbjct: 505 GGQIGDKGVLIAQDGTEYPIIDT-KRENNLPVH--ILSTLPANPKQPFIARVGDELRHLT 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN  I
Sbjct: 562 EANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEI 621

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + P   +  +    A   GA AL G KY D VRV+          S  LCGGTHV+ST
Sbjct: 622 RADRPRDEQRNVPIAKAKEMGAMALFGEKYGDEVRVIKYG------DSVELCGGTHVAST 675

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+           NV   ++ 
Sbjct: 676 GQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQ----LFNERLNNVPDPLKA 731

Query: 763 I-------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
           +        E+ + ++     +  Q+ ++ L+         +  +   + S   K V   
Sbjct: 732 LDRLIAEGAEQRKAIEQYTKAQAEQIALQALADQTKRGETTIVTVNKPMSSDVAKDVAGT 791

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           +++++Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++ GG GGG+PH 
Sbjct: 792 IRERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLIKGG-GGGQPHF 850

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           A +GG N      AI  + S +
Sbjct: 851 ATAGGRNPEGLQAAIDHIVSLI 872


>gi|158337563|ref|YP_001518738.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|205829961|sp|B0CFX4|SYA_ACAM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|158307804|gb|ABW29421.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 873

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/903 (36%), Positives = 504/903 (55%), Gaps = 49/903 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR TFL+F+   GH++LPS+SL+P  DPT++ T +GM+PFK IF GQ +      T
Sbjct: 6   SGAQIRQTFLDFYAAKGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQREAEVPRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI  AW+L T+ + L  
Sbjct: 65  TSQKCIRT----NDIENVGQTARHHTYFEMLGNFSFGDYFKEQAIAWAWELSTEVYKLPP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+  +V++ED+EAF +W+   G+   +I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 121 ERIVPSVFEEDDEAFAIWRDKIGIPEHRIQRMGAEDNFWASGPTGPCGPCSELYYDFYPE 180

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFM++ + +  +   L   +IDTG+GLERMA +LQ   N
Sbjct: 181 K-GDDKIDLEDDTRFIEYYNLVFMEYNRDSDGKLAPLKNKNIDTGLGLERMAQILQGVPN 239

Query: 243 NYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++ G+   K +     + +V+ DH+RS   +IADGI  +N GRGY
Sbjct: 240 NYETDLIFPIIETAAKIAGIKYKKSKAKTKTSLKVVGDHVRSVVQMIADGITASNVGRGY 299

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + +L+G     +  +       +  AYPE+ + + +I+  L  E+ +F 
Sbjct: 300 VLRRLIRRVVRHGQLIGIDGAFITQVAETAIASLEVAYPEVREREKIIKTELEREEAQFL 359

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  +++   K + ++G  AF LYDT+G PL++ Q+I   +GL  +D   F 
Sbjct: 360 KTLNRGEKLLGEIMA--KKPKQISGKDAFDLYDTYGFPLELTQEIAAEQGLT-VDEDGFA 416

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A++EQ+ R R+    +   T +     L      T F+GY                   
Sbjct: 417 KAMKEQQDRGRSAHKTIDL-TVQSALEQLAATVHPTDFLGY------------------- 456

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V A++ +GE V++A +G +V++  DQTPFYAE+GGQ+GD G   G  +
Sbjct: 457 ----TDFSAKAKVAALLVKGETVDQASAGSEVQIALDQTPFYAESGGQIGDRGYLNGKDV 512

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I DVQK+++ IF+H+  +ERG L     L   ID   RRQ+  +H+ATHLL  AL  
Sbjct: 513 VVRIEDVQKESD-IFIHYGRIERGTLEVGDKLTAQIDLACRRQVQAHHTATHLLQAALKN 571

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   + Q GS +  D LRFD  +++ +T  +++ IE  +N  IA+     T +M   +A
Sbjct: 572 IVDESIGQAGSLVAFDRLRFDFNYNQAVTPEQIQEIETQINTWIAEAHTTETEVMPIAEA 631

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA A+ G KY   VRV+ V        S  LCGGTHV +T EI L  IV+E+ + +G
Sbjct: 632 KAKGAVAMFGEKYGAEVRVMDVPG-----VSMELCGGTHVKNTSEIGLFKIVTEAGVASG 686

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAI G     +L  +D  ++ L+   K     +  R+  +  + +  Q      K 
Sbjct: 687 VRRIEAIAGPAVLEYLNVRDAVVRDLSDRFKAKPEELPERITTLQADLKTAQKQLDTLKA 746

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           QL +              +V  +   +  VDS+ LK+    L +K+  G ++L  +  E 
Sbjct: 747 QLALVKSEQLLDQAEPAGEVKVLVSQLEGVDSESLKTAAGRLLQKLGEGAVVLGSVPAEG 806

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K S++   +  +++    A       AK  GGGGG GRP++AQ+GG + +K   A+    
Sbjct: 807 KVSLVAAFSPKVIEQGLQAGKFVGAIAKQCGGGGG-GRPNLAQAGGRDPSKLADALDDAQ 865

Query: 894 SFL 896
             L
Sbjct: 866 KQL 868


>gi|110637850|ref|YP_678057.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123058839|sp|Q11V49|SYA_CYTH3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110280531|gb|ABG58717.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 877

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/921 (34%), Positives = 494/921 (53%), Gaps = 72/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF   GH+++PS+ ++  NDPTLMFTN+GM  FK+ F G E P Y+ +
Sbjct: 1   MTSAEIRQQFLDFFASKGHQIVPSAPIVNKNDPTLMFTNAGMNQFKDYFLGNETPKYRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  +W+LLT  + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWSWELLTSVYKLP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T+++ D+        EA+  WKK   ++ D+I+     DNFW M E GPCGPCS
Sbjct: 121 KDRLYVTIFEGDDKEKLARDTEAYNFWKK--WIAEDRILLGNKKDNFWEMGEQGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    +      G    + +  + +EIWN VF+QF ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTDEEVKAVDGKTLVNNDHPQVVEIWNNVFIQFNRKADGSLEELPDKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   +Q+K +NYD D+F  +I    +  G+KY  +    +  RV+ DH+R+ SF+IA
Sbjct: 239 FERLCMAIQKKKSNYDTDVFTPMIDFVAKAAGIKYGADEKTDIAMRVMADHIRAISFVIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   EP +  L+  L  ++   +PEL   +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLYKLVAVLADQLAHVFPELKSQQDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + + ++ E+  F +TLD GL  L+ +   L   K   ++G  AF+LYDT G PLD++Q I
Sbjct: 359 VAKVVQEEEISFLRTLDIGLSKLEQIREELKAKKATTIDGKTAFELYDTFGFPLDLIQLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F+  +  Q+ R++         + E   +++  +    +F+GYD L 
Sbjct: 419 ARENGLT-VDEAGFDTEMAAQKQRSKKA------ASVETSDWTIVTEDDEVEFVGYDHLI 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  + + R+V  +                               + ++V D TPFYAE+
Sbjct: 472 STSRIIKYRQVKTKGK----------------------------DQYQLVLDTTPFYAES 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ GDTG  +    ++++ +  K+   + +H  I E+     +  +   ++   R    
Sbjct: 504 GGQAGDTGTLVQGDKKIKVLNTVKE-NNLIIH--ITEQLPADLKAPVDCKVNVLQRSLTE 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LGSHV+Q GS +    LRFD +H   +T  ELK +E  VN+ I 
Sbjct: 561 NNHSATHLLHAALKQVLGSHVNQKGSLVNESVLRFDFSHFSKVTEEELKKVELIVNEKIR 620

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+ +   R +  E+A   GA AL G KY + VR+++ +       S  LCGGTHVSSTG
Sbjct: 621 ENISLNERRNVPIEEAKKLGAMALFGEKYGEYVRMITFD----DSFSRELCGGTHVSSTG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I SESS+ AG+RRIEA+T   A   +  Q   L  +   +K +  ++V  +E++
Sbjct: 677 KIGFFKITSESSVAAGVRRIEALTATAAEVFVDEQQTTLAKITELMK-NPKDLVKSLEDL 735

Query: 764 WEEYRKLQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE   LQ         K K        +  K+ D+N +   +       ++ V   L++
Sbjct: 736 LEERIVLQKQLDEYQAEKSKAIAKSLKDTVEKVGDINVIRAKLVLPSVDAMRQVAYDLKQ 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            + + +++++ ++ + K ++ ++++++L+     NA  + R  +K + GG GGG+P  A 
Sbjct: 796 TVDN-LLLVLAVNVDGKPNIAVMISDNLVADKGLNASQMIRELSKEIQGG-GGGQPFYAT 853

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG   N  D+ IA     ++
Sbjct: 854 AGGKELNGLDKVIAKSKDLIQ 874


>gi|304436481|ref|ZP_07396455.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370527|gb|EFM24178.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 890

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/912 (36%), Positives = 514/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                +R  +L FF +K GH  LPS SL+P NDPTL+   +GM P K  FTG+ KP    
Sbjct: 19  MTGKELREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHR 78

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 79  IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y  D+EA ++W +  GLS D I+ +   DNFW +   GPCGP SEI+ D G
Sbjct: 135 PKEKLWVTIYPNDDEARQIWLEQPGLSPDHIVPL--EDNFWEIG-PGPCGPDSEIYIDLG 191

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +R++EIWNLVF Q+++    E  +L   +IDTG GLER+A+V+Q
Sbjct: 192 EERGCGSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQ 251

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ +  V+  +Y  +    ++ +VI DH RS   +I DGILP+NEG
Sbjct: 252 NKKTNFETDLLYPVIEYAANVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEG 311

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+    G    + EL+  +  I   +R E
Sbjct: 312 RGYVLRRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIRRVIRIE 371

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+  +  L  +  +IL G+V FKLYDT+G P ++ ++IL   GL  
Sbjct: 372 EERFAATLVQGIDLLNEEIDTLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK- 430

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F Q +E+QR+RAR+                                        D
Sbjct: 431 LDDAGFVQEMEKQRNRARSARA-----------------------------ENQAVAVPD 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              L      +      + V AI + G +V+    G+   ++   TPF+AE GGQ+GD G
Sbjct: 462 LSGLDTSALTENAEVREANVVAIWRDGTLVDMLHDGESAGIILSTTPFHAEGGGQVGDAG 521

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + D  R+ I + ++  +G   H A VE G ++   ++ + +D  ++   + NH+ATHL
Sbjct: 522 LLLSDVGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHL 581

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  I+G HV Q GS +TP+ LRFD T+ +P+T  +++ IED VN+ I  ++ +   
Sbjct: 582 LQAALQRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEILSSIDLDIS 641

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M    A   GA AL G KY D VRVV V        S  LCGG+HVS+TG+I L  I+ 
Sbjct: 642 TMPIAVAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
           ES + AG+RRIEAITG+ A  ++   D  +++L+  LKV  G++  +V+++ +E + +Q 
Sbjct: 697 ESGVAAGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLPTQVDKLIDEKKNMQE 756

Query: 772 --LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
               +A  + Q + + L     +I   + +   ++    +EL+++ D   +K+ +GI++L
Sbjct: 757 QLRTYADSRDQADAQKLLSDVQEIGKFHVIVGKVNVYSMEELRNIADLACEKLSAGIVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G++   K ++++   +D +    +A ++ + +AK +GGGGG GRP MAQ+GG       
Sbjct: 817 -GMADNDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGGG-GRPDMAQAGGKIPQNLS 874

Query: 887 QAIAGVASFLKK 898
           QA       +++
Sbjct: 875 QAFDDAVLIIRQ 886


>gi|323140610|ref|ZP_08075534.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322414874|gb|EFY05669.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 873

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/908 (37%), Positives = 499/908 (54%), Gaps = 56/908 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FFQ  GH +LPS+SLIP +DPTL+   +GM PFK  FTG+ KP    +
Sbjct: 4   MTGNEIREKFLKFFQDRGHLMLPSASLIPQDDPTLLIIGAGMAPFKPFFTGKMKPPATRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVGRT RHHT+FEMLGNFSFG YFK+  I  +W+ LTKE  L 
Sbjct: 64  TTCQKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWSWEFLTKELGLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LYIT++ ED+EAF +W  + G+  D I+R+   DN+W +   GPCGP SEI  D G 
Sbjct: 120 GDKLYITIHTEDDEAFDIWHNVVGVPEDHIVRLA--DNWWEIGS-GPCGPDSEIHIDLGP 176

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +R++EIWNLVF QF Q        L   +IDTG GLER+A+V+Q 
Sbjct: 177 ERGCGKPTCGPGCDCDRFLEIWNLVFTQFNQMPDGTYPPLKNKNIDTGAGLERLASVVQG 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +N++ DL   +I+ + ++  ++Y  +    V+ +VI DH+RS +F+I DGILP+NEGR
Sbjct: 237 KPSNFETDLIFPIIEYAAKIANVEYGKDKATDVSLKVIADHVRSMTFMIGDGILPSNEGR 296

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ +ARLLG  E  +   +  +    G AYP L++    I++ +  E+  
Sbjct: 297 GYVLRRILRRAIRHARLLGINEMFLTGAVDVVIGMFGHAYPNLVEKADFIKKVVEMEETS 356

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +TL +G  LL+  +  L      +L+G  AFKL DT G P ++ ++IL   G+   D 
Sbjct: 357 FLRTLKQGCELLNEEIEKLKAENKTVLDGATAFKLNDTFGFPWELTEEILEEAGMTM-DK 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+ ALE QR  AR                                  G   +     +
Sbjct: 416 EGFDAALEVQRKMAREARNDK---------------------------EGRPVVYNTSGI 448

Query: 476 LCQKPPIDLTNGVSSIVKAI-VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
              +  +D     + IVK       + +E A  G  V V+ D T F+AE GGQLGD G  
Sbjct: 449 NVAELKVDEAATEAKIVKMYPAHDAQPIENAADGTDVAVICDVTAFHAEGGGQLGDIGTI 508

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + +   +K  +G  +    V  G +    ++   +D   +  ++ NH+ATHLLH
Sbjct: 509 TASTGVIAVNVTKKLPDGAVIMIGSVTEGTVAVGDAVTFAVDKARKMDIARNHTATHLLH 568

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG+HV+Q GS + PD LRFD +H   +T+ ELK +E  VN+ +     V    +
Sbjct: 569 AALKQVLGAHVNQAGSYVGPDRLRFDFSHFSQVTAEELKEVEAIVNEQVLAGKAVNIEEL 628

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY + VRVV+V        S   CGG+HVS+T +I +  IVSE 
Sbjct: 629 PIEEAKKKGATALFGEKYGNIVRVVTVP-----DFSMEFCGGSHVSNTAQIGMFKIVSEG 683

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  AG+RRIEA+TG  A +H+   +E +  LA+ LK    +V  R+E +  E +  Q   
Sbjct: 684 SSGAGVRRIEAVTGHGAVAHVNATEEMVNGLAAELKCRCCDVPTRLEALQCELKAAQKKA 743

Query: 775 AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829
            +   ++    +S    +I D N +  ++ +V++     L+++ D ++ K+   ++  + 
Sbjct: 744 EELAAEIAKVQVSNVADQIKDANGVPVLVQKVNADSVDALRNLGDQMRDKVGGVVV--LA 801

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               +K S+L + T+D + +  +A ++ +  AK+ GGGGG GRP MAQ+G  +  K D+A
Sbjct: 802 AVMGEKVSILTMATKDAVAKGVHAGNIVKAVAKLCGGGGG-GRPDMAQAGAKDVAKVDEA 860

Query: 889 IAGVASFL 896
           +A     +
Sbjct: 861 LAAAFDIV 868


>gi|323127641|gb|ADX24938.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 872

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/913 (35%), Positives = 492/913 (53%), Gaps = 68/913 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  K F  
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPKWFGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I +   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKEKLYMTYYPDDKDSYNRWISL-GVEPSHLIPL--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
                   G        E +RYIEIWN+V  QF    +    E   LP  +IDTG GLER
Sbjct: 177 TEFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L +   + L G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKNIFKLYDTYGFPVELTEEMAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +  GS   +    +              +   S F+
Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQNETLA-------------GITESSTFL 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            E                V + +  I+   E  E    GQ   +VFDQTPFYAE GGQ+ 
Sbjct: 463 YET-------------ETVDARLAVIIVDNERSEVVSEGQ-ALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G           ++ DVQK   G  +H   V    L  +    L ID++ R  +  NH
Sbjct: 509 DRGVIKNANGDIVARVIDVQKAPNGQALHTVDVL-ASLALDTVYTLDIDHKRRYAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H +Q GS    + LRFD TH + +T  EL+ IE+ VN  I + L
Sbjct: 568 TATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIWKAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A + GA AL G KY   VRVV +     G +S  LCGGTH+++T EI L
Sbjct: 628 AITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G RRI A+TGQ+A      Q+  LK +A  LK  Q   V  +V  + E+
Sbjct: 683 FKILKEEGIGSGTRRILAVTGQQAFESFRKQEYALKEIAHILKAPQMDQVPAKVVSLSEQ 742

Query: 767 YRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R LQ  +   K K           ++ +VN + +I S+V   D+  L++  D  ++K  
Sbjct: 743 LRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++LV    EK   ++   +++     +A ++ ++ A ++  G GGG+P MA +GG +
Sbjct: 803 SEVLVLVAAIGEKVNVLVASKSKE----VHAGNMIKVLAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVAS 894
            +K    +A V  
Sbjct: 858 ASKISDLMAAVPE 870


>gi|329666846|gb|AEB92794.1| alanyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026]
          Length = 882

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/918 (36%), Positives = 504/918 (54%), Gaps = 65/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA+ +W  + GL  D I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF QF      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            +++Q+   N++ DLF  +I+ +E+++ G KY  N  + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSIIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  I++ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TL  GL LLD +++   K  D+ ++G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  ID   F++ ++ Q+ RAR     L S  ++ +  +L      ++F           
Sbjct: 416 GLK-IDKKGFDEEMKAQKERARKARGNLQSMGSQDV--TLMNIKDKSEF----------- 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ+
Sbjct: 462 ------------EYGTLEEKHAKLIDIVVDDKLVDKA-DGEHATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  +     L  ++ DVQ       +H   V    L      VL +D + RR L  N
Sbjct: 509 ADHGEILNQNGELVARVADVQHAPNDQNLHFVDVI-LPLEKGQEYVLKVDQKRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ S+E  VN+ I + 
Sbjct: 568 HTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNEKIWEE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T + + +  +  GA AL G KY D VRVV +        S+  CGGTH  +T +I 
Sbjct: 628 IPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQI-----DDFSTEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES++ AG RRI A+TG  A  ++  +DE LK +   +K     +VV ++  I +
Sbjct: 683 MLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKISSIED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           + R  Q    + K Q+N            ++ D+  ++         +L+ + D  +   
Sbjct: 743 DLRASQKEAEQLKAQINKAKAGDLFNDIKQVKDLTVIAVQADVEGMNDLRELADNWKSSN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L      K   V+ +  + +     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 803 KSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFLKK 898
           N      AIA V   +++
Sbjct: 862 NPAGLKDAIAKVLQEVEE 879


>gi|86148968|ref|ZP_01067200.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597061|ref|ZP_01100297.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562159|ref|YP_002343938.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|20532267|sp|Q9PI05|SYA_CAMJE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|85840326|gb|EAQ57583.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190750|gb|EAQ94723.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359865|emb|CAL34653.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315927005|gb|EFV06360.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 842

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 504/895 (56%), Gaps = 58/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK            E   L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 508 LDTQKFFNLNLSFIKAGEE--LKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A   +  Q E+L  +   LK +         +I    +KL+      K +L  
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELKNN---------DILSGIKKLKNEILSLKNELKN 730

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +     ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V 
Sbjct: 731 SSKTELDSKNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV- 788

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|257460412|ref|ZP_05625513.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257441743|gb|EEV16885.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 847

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/894 (39%), Positives = 516/894 (57%), Gaps = 53/894 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR+ +L FF   GH+++PS+ L+P +D +L+FTN+GMVPFK+IFTG        + T+ 
Sbjct: 2   DIRSEYLNFFASKGHQIIPSAPLVP-DDDSLLFTNAGMVPFKSIFTGAVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKEQAIAYAWEFITEILKLPKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LY+TV+++D++A++ W +   ++ ++I R   +DNFW+M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHEKDDKAYEFWAR--HIARERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + + K +N
Sbjct: 179 HSPEDYMGGDGDRFLEIWNLVFMQYERSKDGKLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  LI    ++ G  Y   +  ++RVI DH+RS  FL+A G     EGRGYVLRR
Sbjct: 239 YDSSLFMPLIDEVAKLCGRPYVYESGASYRVIADHIRSVVFLLAQGTNFNREGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L + K  ++E ++ E+ERF  TL 
Sbjct: 299 ILRRAVRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKEAVKEQIKLEEERFFATLA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L+     EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F+  + 
Sbjct: 359 NGIELFNEELARTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLR-VDEAKFDALMS 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR  A+A   G G       + +L EK+G  +F GY+ L                    
Sbjct: 416 EQRQIAKAAWKGSGDKNVRGDFKALLEKFGENKFSGYEEL-------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
             +  S ++  + +    V+E  +G     +FD TPFYA++GGQ GD+G          +
Sbjct: 456 --SRTSKVLALLNEDFAEVDELKAGDIGWAMFDVTPFYAQSGGQTGDSGEVES---IADV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK   G+ + H  + R  L+    + L +  + R Q++ +HSATHLLH AL  +LG+
Sbjct: 511 FDTQK-FYGLNLSHLRLNRN-LKIGDIVGLKV-SEEREQIARHHSATHLLHAALRAVLGA 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H++Q GS +  D LRFD +H K ++  EL  IE+ VN+ + +     T IM+ +DA  SG
Sbjct: 568 HIAQAGSLVEADRLRFDFSHPKALSDEELAKIEEFVNNAVCKGCAAKTEIMDIDDAKNSG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY  +VRVVS      G  S  LCGG HV +  EI   +IV ES + AG+RRI
Sbjct: 628 AIALFGEKYGSKVRVVSF-----GEISKELCGGIHVRNLSEIGSFFIVKESGVSAGVRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A +  +    KL  +++ LK      +  +E++ +E R L+    + K   + 
Sbjct: 683 EAVCSRAALNLALQNRAKLAEISAELKG--IEPLRAIEKLKDEIRSLK---DQIKHASSS 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             L+   + D       ++ V+S ++K+++D  +   +   IML+ +  + K S+   V 
Sbjct: 738 HALAFLNVGDTKLC---VASVESGDIKTMIDEFKNSHEKAAIMLMQVGADGKISIAAGVK 794

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                   A +  +L A++LGGGGG GR   A +GG +  K ++AI    S+ K
Sbjct: 795 NAP---IKAGEWVKLVAQILGGGGG-GRDDFATAGGKDVLKIEEAIKEAISYAK 844


>gi|218294683|ref|ZP_03495537.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218244591|gb|EED11115.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 881

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/919 (37%), Positives = 502/919 (54%), Gaps = 74/919 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  +L FF+  GH  LPS SLIP NDP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKYLSFFESKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ +TT QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGPCGPC 172
             LD  RL++TVY++D+EA+ +W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LKLDPERLWVTVYEDDDEAYAIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNK----QERFILPKMSIDT 226
           SEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +I+    ++G  Y G   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFYPIIERVALLSGRPYLGKESVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+  +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +    
Sbjct: 297 ADGVTFSNTGRGYVIRRLLRRALRHGYLLGLAEPFLHRLAPVVAELLGDFYPEMRENLQA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLRRLDALLSGLKPGEVLPGQEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+ R+RA           + ++   L  + GAT+F+GY  L 
Sbjct: 417 ERGY-GVDTEGFKRAMEEQQERSRAAMAFEREIFKRSAQVLEELYAERGATEFLGYGTLE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   E + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAQVLALLAGDESLPEAGPGTEVQVVLDRTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++    K   GIF+H A VE G+L     +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTLKTERGIFLHRARVEEGVLGVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ IE  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKGEELERIELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703
            + PV  R +  E+A   GA AL G KY + VRVV VE     G+ S  LCGGTHV  TG
Sbjct: 632 ADFPVTWRYLPLEEAKKEGAMALFGEKYGEVVRVVRVEGSPVPGLESKELCGGTHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEGAIRFARGALSRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQK 818
             E++  +      K +L    L        +   + + +  +  +D   L+   D L  
Sbjct: 752 LAEFKAREKEVESLKARLVQAALGGGGVALEEKGGLRWAALELPGLDMAALRQAADDLVN 811

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAK-------VLGGGGGGG 870
           +     ++L G         ++ +++   +R   A  L +   +         G      
Sbjct: 812 RGADVALVLSGGQA------VLKLSKGAQERGLEAGSLFQALTQRAGGRGGGKG------ 859

Query: 871 RPHMAQSGGPNGNKADQAI 889
              +AQ GG +  +A  A+
Sbjct: 860 --ALAQGGGLDPERAKAAL 876


>gi|229496595|ref|ZP_04390309.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316492|gb|EEN82411.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 873

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/915 (35%), Positives = 485/915 (53%), Gaps = 71/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  F+ FF +  H ++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  +
Sbjct: 1   MTANEIRAAFVAFFAEKQHHIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVEAKYPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   + 
Sbjct: 61  ADAQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWEFLHERLGIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY T+++  E        EA   W +   L  ++I+     DNFW M ETGPCGPCS
Sbjct: 121 ADRLYATIFEGAESDGSERDNEAASYWGRF--LPQERILDGNKKDNFWEMGETGPCGPCS 178

Query: 174 EIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI      D+      G    + +  + +EIWNLVFMQ+ +       +LP   IDTGMG
Sbjct: 179 EIHIDLRSDEERMQQSGRELVNRDHPQVVEIWNLVFMQYNRMADGSLSLLPHKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   +Q K +NYD D+F+ LI A  Q++G+ Y  E ++ V  RV+ DH+R+ +F I 
Sbjct: 239 FERLCMAMQGKRSNYDTDVFQPLIGAVAQLSGIPYGKEESSDVAMRVVADHVRTIAFAIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  E  M  LLP L   MG AYPELI  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGRREAFMYALLPTLIESMGGAYPELIAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I++ +R E+E F +TL+ G+ LLD  +  LG    L+G  AF LYDT G PLD+ + IL 
Sbjct: 359 IQKVMREEEESFLRTLEAGIKLLDKKIEELGNKGQLSGHDAFVLYDTFGFPLDLTELILR 418

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G+  +D   F++ + EQ++RAR+ +           W +L E  G T F+GYD     
Sbjct: 419 EHGMT-LDQKGFDREMAEQKARARSAAQ-----LETDDWVTLAE--GETLFVGYDQTEAD 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   R V  +                                 +VV   TPFYAE GG
Sbjct: 471 CSILRYRHVKQKNKDF----------------------------YQVVLSATPFYAEMGG 502

Query: 527 QLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GD+G  +  +G+R  I D  K+   + VH  ++ +       +    ID + RR    
Sbjct: 503 QVGDSGILVDEEGMRYAIVDT-KRENNLPVH--LMPKLPNDPGQTFRAEIDQERRRMAEA 559

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG HV Q GS ++P+ LRFD +H   +T  E++ +E+ V   +  
Sbjct: 560 NHTATHLLHQALRMVLGEHVEQKGSFVSPEVLRFDFSHYNKLTPEEIRQVEELVTQAVRA 619

Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + P      +   +A A GA AL G KY + VRV+          S  LCGGTHV STG 
Sbjct: 620 DYPREEHRNIPIAEARAMGAMALFGEKYGEEVRVMKYG------TSIELCGGTHVPSTGM 673

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    IVSESSI AG+RRIEA+T   A + L  Q++ LK + + L  +  +VV  ++++ 
Sbjct: 674 IGAFRIVSESSIAAGVRRIEAVTATNAEAFLYKQEDTLKEIKALLNNTP-DVVKALQKLL 732

Query: 765 EEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSVMDALQKKI 820
            E   L+       +       ++L    I    +   ++   + +  +K +   L+ ++
Sbjct: 733 SEESALKSELDTLQRSHAIRLKKELLASSIERSGYRLFVLQGEEKADIIKDIAFQLRGEL 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           Q   + +   ++  +  + ++++E+ +    +A +L + +A+++ GG GGG+PH A +GG
Sbjct: 793 QEPFVFVAATTEGARGLLSVMLSEEAVTLGLHAGNLVKEAARLIQGG-GGGQPHFATAGG 851

Query: 880 PNGNKADQAIAGVAS 894
            + N   QA+  + S
Sbjct: 852 KDANGLPQALELILS 866


>gi|1565288|emb|CAA69650.1| alanyl-tRNA synthatase [Thermus thermophilus]
          Length = 882

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/919 (37%), Positives = 507/919 (55%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  FL FF+  GH  LPS SLIP +DP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGAKPIFGGRE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++ VTT Q+C+R G    D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI  AW+ LT+ 
Sbjct: 61  WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGPCGPC 172
             LD  RL++TV+++D+EA+++W+ + G+  ++I R   ++N+W          GP GPC
Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176

Query: 173 SEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQ----NKQERFILPKMSIDT 226
           SE F+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +IDT
Sbjct: 177 SETFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQAPIPGPGILKPLPQKNIDT 236

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGL R+A +LQ+  + Y  D F  +IQ   +++G  YEG   V+HRVI DH+R+    +
Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG   +N GRGYV+RR++RRA+ +  LLG ++P +  L P +   +G  YPE+ +    
Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I  
Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464
            RG  G+D   F +A+EEQ+SR+RA             ++   L  + GAT+F+GY+ L 
Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRAAMAFEREIFKKGAQVLEELYAERGATEFLGYNALE 475

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V A++   + + EA  G +V+VV D+TPFYAE 
Sbjct: 476 -----------------------AEAEVLALLAGDQSLLEAGPGTEVQVVLDKTPFYAEG 512

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G     G R ++   +K   GIF+H A VE G+LR    +   +D   RR   
Sbjct: 513 GGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDTE 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+   EL+ +E  VN  I 
Sbjct: 572 RNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWIM 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTG 703
            + PV  R M  E+A   GA AL G KY + VRVV VE     G+ S  LCGG HV  TG
Sbjct: 632 ADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRTG 691

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I SE ++ AG+RRIEA+TG+ A     G   +LK+LA  L+V +  +  R+E++
Sbjct: 692 EIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEKL 751

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQ 817
             E ++ +      K +L    L         +   + +    +  +D+K L+   D L 
Sbjct: 752 LAELKEKEREVESLKARLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK-------VLGGGGGGG 870
            +     ++L         +VL +  +       A  L R  A+         G      
Sbjct: 812 ARGADVALVL-----SGGQAVLKLSPKAQGMGLEAGALFRALAEKAGGRGGGKG------ 860

Query: 871 RPHMAQSGGPNGNKADQAI 889
              +AQ GG +  KA +A+
Sbjct: 861 --ALAQGGGLDPRKAREAL 877


>gi|300770787|ref|ZP_07080665.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762344|gb|EFK59162.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 893

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/922 (35%), Positives = 515/922 (55%), Gaps = 76/922 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+N   IR  FL FF+   H+++PS+ ++  NDPTLMFTN+GM  FK+ F G+ +P Y  
Sbjct: 23  MTN-REIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKYSR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT  + L
Sbjct: 82  IADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTVVYKL 141

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+ RLY+T+++ D+        EA+  WK  S +S D+I+     DNFW M ETGPCGPC
Sbjct: 142 DKDRLYVTIFEGDDSEGLVKDTEAYDFWK--SWISEDRILLGNKKDNFWEMGETGPCGPC 199

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI +D + E      PG    + +  + IEIWNLVFMQF +        LP   +DTGM
Sbjct: 200 SEIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGM 259

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   +Q K++NYD D+F+ +I    Q  G++Y  +    +  RV+ DH+R+ SF I
Sbjct: 260 GFERLVRAIQGKSSNYDTDVFQPMIAFIAQKAGIQYGADERTDIAMRVLSDHIRAVSFAI 319

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   L +  P +  L+P L  E    + ELIQ + 
Sbjct: 320 ADGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFINELVPLLAKEFEGVFDELIQQQD 379

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ +  E+  F +TL  G+   +        +  + G+ AF+L+DT+G P+D+ + + 
Sbjct: 380 FVQKVVLEEEVSFLRTLVTGVQRFESYAE---SNTAVGGEFAFELFDTYGFPIDLTELLA 436

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G+  +D+  F +AL+ Q+ R+RA      +      W ++ E     +F+GYD L+ 
Sbjct: 437 REKGME-VDMAGFQEALQIQKDRSRAA-----TAIDTGDWVAVSED-DQVEFVGYDNLKA 489

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  + + RKV  +                              ++ ++V   TPFYAE G
Sbjct: 490 TTEIVKYRKVTAKGK----------------------------EQYQLVLSVTPFYAEGG 521

Query: 526 GQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+GD+G  + +  G ++ ITD +K+  G+ VH        ++ E +    +D Q R   
Sbjct: 522 GQVGDSGVLLSESTGEKIYITDTKKE-NGLIVHF--TNTLPVQMEGTFEAKVDVQKRLDT 578

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV+Q GS +  D LRFD++H   +T  ELK +ED VN  I
Sbjct: 579 ENNHSATHLLHAALKEVLGTHVNQKGSLVNADILRFDISHFAKVTEEELKQVEDIVNAKI 638

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+  +  +  + A+ SG  AL G KY D VRV++ + +     S  LCGGTHV +T
Sbjct: 639 RENIPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVITFDDQ----FSKELCGGTHVKAT 694

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I+SES++ AG+RRIEAITG +  + +    + +  L   L  +  + V  + +
Sbjct: 695 GQIGFFKIISESAVAAGVRRIEAITGTKCAAVIREHFDLVHRLGELLH-NPKDFVSTLSK 753

Query: 763 IWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + +E   L+    K  ++ ++      +    +I  VNF++  +   +++ LK++  AL+
Sbjct: 754 VIDENSALKKEIEKSIIEKSLALKSDLEQKIQQIDGVNFLATQVELPNAEALKTLAYALK 813

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
             + + + +++G   + K ++ +VV++ L      NA  + R  AK + GG GGG+P  A
Sbjct: 814 GAVDN-LFLVLGADFDGKPNLTVVVSDQLSKERGLNAGTIVRELAKEINGG-GGGQPFFA 871

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N      AIA   ++++
Sbjct: 872 TAGGKNPEGLPAAIAKAKNYIQ 893


>gi|186681072|ref|YP_001864268.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|205830164|sp|B2J876|SYA_NOSP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|186463524|gb|ACC79325.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 880

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/906 (37%), Positives = 513/906 (56%), Gaps = 49/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR TFL FF +  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ  P ++  T
Sbjct: 9   SGNEIRNTFLNFFAQRSHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRAT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F    
Sbjct: 68  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGFSP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+++D+EAF +W+   G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 124 QNLVVSVFEDDDEAFAIWRDQIGVPVARIKRLGEDDNFWVSGPTGPCGPCSEIYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 184 -RGDENIDLEDDSRFIEFYNLVFMQYNRDVLGNLTPLQNKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ + Q+ G+ Y  ++    V+ +VI DH+RS   +IAD I  +N GRGY
Sbjct: 243 NYETDLIFPIIQTAAQIAGIDYHSSDEKTKVSLKVIGDHVRSVVHMIADEIRASNVGRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR + + RL+G +      +  +      SAYP + Q +  I+  L+ E+  F 
Sbjct: 303 VLRRLIRRVVRHGRLIGISGEFTTQVAESAIALSESAYPNVRQREAAIKAELQREESNFL 362

Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TLDRG  LL+ ++  + +     ++G+ AF LYDT+G PL++ Q++     L  +D   
Sbjct: 363 RTLDRGEKLLEEIIQEVKQQGSTQISGESAFTLYDTYGFPLELTQEVAEENNLT-VDAEG 421

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +E Q+ R R     +   T +     L E    T+F+GY                 
Sbjct: 422 FEAQMEIQKGRGRDAHETIDL-TVQGSLDKLAEHIQVTEFLGY----------------- 463

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                   +  ++I++AI+ +G   EEA +G +V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 464 ------TQSAATAIIEAILLEGVSQEEAEAGTQVQIVLDKTPFYAESGGQIGDRGYISGD 517

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           GI +++ DV+K+++  FVH   +ERG LR    +   ID   RR+   NH+ATHLL  AL
Sbjct: 518 GIVVRVEDVKKESD-FFVHFGRIERGTLRVGDRVTAQIDPACRRRAQANHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS ++ D LRFD    + +T+ E++ +E+ VN  IA+       ++   
Sbjct: 577 KKIVDDGISQAGSLVSFDRLRFDFNCPRALTAEEVQQVEEQVNSWIAEAHAAKVEVLPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHVS+T EI +  I+SE+ + 
Sbjct: 637 EAKAKGAVAMFGEKYGDEVRVIDFPN-----VSMELCGGTHVSNTAEIGVFKIISEAGVA 691

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  Q      
Sbjct: 692 SGVRRIEAVSGPAILDYLNLRDKVVKDLSDRFKVKPEELPDRITSLQSELRNSQKELETL 751

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K+QL +            + D   +   +  VD + LK+  + L +KI +G ++L  + +
Sbjct: 752 KVQLAIAKSDSLLQTAETVGDHKIIVAQLENVDPESLKTAAERLLQKIGNGAVVLGSVPE 811

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   + ++  +   A       AK+ GGGGG GRP++AQ+GG + +K   A+  
Sbjct: 812 ADKVSIVAAFSPEVNKKGLQAGKFVGAIAKICGGGGG-GRPNLAQAGGRDASKLPDALGQ 870

Query: 892 VASFLK 897
             S LK
Sbjct: 871 AESDLK 876


>gi|237719250|ref|ZP_04549731.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293372256|ref|ZP_06618641.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|229451629|gb|EEO57420.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292632698|gb|EFF51291.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
          Length = 872

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     I +++ +  +   + + ++ +K++   L+ 
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNTDGLPAAVEKVLEL 869


>gi|160886801|ref|ZP_02067804.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483]
 gi|156107212|gb|EDO08957.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483]
          Length = 872

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKE-NNLPIH--ITKKLPDHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     I +++ +  +   + + ++ +K++   L+ 
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNTDGLPAAVEKVLEL 869


>gi|299148308|ref|ZP_07041370.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|298513069|gb|EFI36956.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 872

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVVDTKKE-NNLPIH--ITKKLPDHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     I +++ +  +   + + ++ +K++   L+ 
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNTDGLPAAVEKVLEL 869


>gi|57238291|ref|YP_178628.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|148925880|ref|ZP_01809567.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|73621968|sp|Q5HVQ7|SYA_CAMJR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57167095|gb|AAW35874.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|145844866|gb|EDK21970.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|315057927|gb|ADT72256.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 842

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 504/895 (56%), Gaps = 58/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK            E   L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 508 LDTQKFFNLNLSFIKAGEE--LKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A   +  Q E+L  +   LK +         +I    +KL+      K +L  
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELKNN---------DILSGIKKLKNEILSLKNELKN 730

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +     ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V 
Sbjct: 731 SSKTELDSKNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV- 788

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|313115845|ref|ZP_07801279.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621843|gb|EFQ05364.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 887

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/917 (36%), Positives = 506/917 (55%), Gaps = 57/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LT  +   
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + RL+I+VY+ED+EA+ +W K  G++ D ++R+   DNFW     GPCGPCSEI+FD+
Sbjct: 120 IPKDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHGS-GPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E++    Y  ++   ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QGVGNLFEVDTVQSVLHHVERIANKTYGEDDKTDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG T P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGITRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K  + +L G   FKL DT G PLD+ ++I   +G+  I
Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F+  + +Q+ RARA  L    SG +E ++ +L  +   T F GY+ L         
Sbjct: 418 DEEGFHAEMTKQKERARAERLKKNISGWSEDLFGALNAE--PTVFTGYETLND------- 468

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQL 528
                           + +V A+  +  + +   + ++    V VV D+TPFYAE GGQ 
Sbjct: 469 ----------------TGVVVALSDEETLTDAIATDEEAKDGVLVVLDKTPFYAEMGGQA 512

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G        L++ DV+K  +G +VH  ++E GI++    L   +D + R  ++ NH+
Sbjct: 513 ADHGMLNSADCSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLTAQVDKEYRMAIARNHT 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG HV Q GS    +   FD TH   +T  EL  ++  VND I +++ 
Sbjct: 573 ATHLLQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMN 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  R M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I   
Sbjct: 633 VTVREMPIEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGF 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSE+S+ AGIRRIEA+TG+        Q+  L ++AS LK +    +  R E +  E 
Sbjct: 688 KIVSEASVAAGIRRIEAVTGRNLLIRANLQEAMLHTVASTLKANNVTALPVRAEAVMAEN 747

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L     + K Q+    +     +  +I  V   S   +      L+ + D ++ K   
Sbjct: 748 KALAKELEEIKAQVAASKVTSLFDNAEEIGGVKIASAYFTGTTGDTLRGMCDTIRDKAVK 807

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             + ++    E K ++ + VT+   ++   A  L +  A + GG GG G+P  A +G  +
Sbjct: 808 PAVAVLVGKAEDKITMAVTVTKQAQEKGLKAGALVKEIAAIAGGKGG-GKPDFAMAGLKD 866

Query: 882 GNKADQAIAGVASFLKK 898
             K D+A+A V++ +KK
Sbjct: 867 ETKIDEALAAVSAIVKK 883


>gi|284925772|gb|ADC28124.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902]
          Length = 842

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 504/895 (56%), Gaps = 58/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DVGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK            E   L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 508 LDTQKFFNLNLSFIKAGEE--LKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A   +  Q E+L  +   LK +         +I    +KL+      K +L  
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELKNN---------DILSGIKKLKNEILSLKNELKN 730

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +     ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V 
Sbjct: 731 SSKTELDSKNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV- 788

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 KDVP--LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|313888208|ref|ZP_07821882.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845898|gb|EFR33285.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 870

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/903 (38%), Positives = 522/903 (57%), Gaps = 48/903 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           +  IRT FL+FF+  GH +LPS SLIP ND +L+   +GM P K  FTG+E P  + VTT
Sbjct: 6   LHDIRTEFLKFFESKGHFILPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEEIPPAKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG T+RH TFFEMLGNFSFG YFK   I  AW+ LT   ++ + 
Sbjct: 66  CQKCIRTG----DIDNVGLTDRHATFFEMLGNFSFGDYFKHEVIPWAWEFLTVNLEIPKE 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            L++TVY ED+EA+ +WK + G+  +KIIR+   DNFW + E GP GPCSEI+ D+G   
Sbjct: 122 DLWVTVYYEDDEAYNIWKDVVGIDEEKIIRLGKEDNFWEL-EVGPSGPCSEIYVDRGLEH 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    EG+R+IE+WNLVF QF++  +     L   +IDTGMGLER+ATVLQ   N 
Sbjct: 181 GSEDERPGGEGDRFIEVWNLVFTQFDKDEEGNYKPLAHPNIDTGMGLERIATVLQGTDNI 240

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           ++ID  K +IQ   +V+G KY  +    ++ RVI DH+R+ +F+I+D I+P+NEGRGYVL
Sbjct: 241 FEIDAIKDIIQEIAKVSGKKYGQDKNADISFRVITDHIRAMTFMISDTIVPSNEGRGYVL 300

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RRA  + R LG     +  +   +    G  Y EL + +  I+E +R E+E+F +T
Sbjct: 301 RRLIRRAARHGRKLGIERAFLYEIADMVINSWGEQYTELKENRESIKEIIRREEEKFLET 360

Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +D GLV L   +  + ++  ++L+G+ AFKLYDT+G P+D+ ++IL   G   +D+  F 
Sbjct: 361 IDGGLVRLKAHIDEMKENNEKLLDGEKAFKLYDTYGFPIDLTEEILREDGY-DVDMEGFQ 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +++Q+ RAR        G   +    L E     +F+GY+                  
Sbjct: 420 KEMDDQKRRAREARNDSNVGWANQDNKHLFEGLSD-EFLGYE------------------ 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                 +   + +  I+   EIV+    GQ+  VV D+T FY E+GGQ+GDTG  I D  
Sbjct: 461 -----KDECDANITRIIADDEIVDSLEEGQEGLVVLDKTTFYGESGGQVGDTGEIISDNF 515

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +L++TD +K  +G+ +H   VE G L     +   ID + R  +  NHS THLLH AL  
Sbjct: 516 KLRVTDTKKTKDGLHLHLVKVEEGRLEK-APVKAIIDSKRRNNIRRNHSVTHLLHRALKD 574

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LGSHV+Q GS +  D +RFD +H   +T  E+  +E  VN+ I + LPV T++   E+A
Sbjct: 575 VLGSHVNQAGSLVMADRMRFDFSHFDAMTKEEIAEVERRVNEKIFEGLPVETKVTGLEEA 634

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA  L   KY D+VRV+S+     G +S  LCGGTHVS+T EI +  I+SES I  G
Sbjct: 635 KEMGAIGLFEGKYQDQVRVLSM-----GDYSRELCGGTHVSNTSEISMFKILSESGISNG 689

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQ-LIH 774
           +RRIE+ITG     +L     K + +AS LK ++  ++ +    ++ + E  + L+ L H
Sbjct: 690 VRRIESITGPAVYEYLNNLSAKEEEIASELKSNKDEIIQKIKLNIKNLKEANKNLEKLEH 749

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
              K Q++       +   + ++      VD   L+ + D ++ K+ S +++L     + 
Sbjct: 750 DLAKDQISDITGDVREKNGIKYVIKKFDGVDVNTLRDLADEVRNKLGS-VVVLFAAVNDD 808

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K + +  V++DL+D +  A  L +  AKV GGGGG GRP MA +G  + +K ++A+  + 
Sbjct: 809 KLNFVCAVSKDLVDKKIAAGKLIKKIAKVAGGGGG-GRPDMATAGAKDLDKVEEALNKLD 867

Query: 894 SFL 896
             L
Sbjct: 868 ELL 870


>gi|291297318|ref|YP_003508716.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290472277|gb|ADD29696.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 883

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/926 (37%), Positives = 513/926 (55%), Gaps = 76/926 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK------ 55
              + IR  FL+FF+  GH  LPS S++P +DPTL+F N+GM P K  F G++       
Sbjct: 1   MKTAEIREKFLQFFESKGHLRLPSFSVVPQDDPTLLFINAGMTPLKPYFLGKKPVFPGHE 60

Query: 56  PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  VTT QK VR G    D++NVGRTNRH T FEMLGNFSFG YFK+ AI+ AW+ LT
Sbjct: 61  GEWYRVTTCQKSVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAIEWAWEFLT 116

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS-----MAETGP 168
             K   LD  R+Y+T+Y +D+EAF+ W ++ G+  +KI R   ++NFW          GP
Sbjct: 117 DPKWLGLDPTRIYVTIYKDDDEAFEHWTRV-GVPPEKIHRFDADENFWPQNAPTKGPNGP 175

Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPCSEI++D+G             + E  R++E+WNLVF Q+++++      LPK +ID
Sbjct: 176 CGPCSEIYYDRGPAFGSDTWADYYETRESNRFVELWNLVFPQYDRKDGGVLEPLPKPNID 235

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285
           TGMGL R+A VLQ+ T+ Y+ D F+ LI    ++TG+ YEG + V HRVI +H R+ +F+
Sbjct: 236 TGMGLARVAMVLQDVTDFYETDEFQPLIAKIVELTGISYEGPSSVAHRVIAEHARAVTFI 295

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ++DG+  +N GRGYV+RR++RRA+ +  LLG  EP M  L   +   MG  YPEL +   
Sbjct: 296 LSDGVHFSNTGRGYVVRRLLRRAVRFGYLLGLREPFMYRLAEVVAQVMGGVYPELKENLE 355

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ ++ E+E+F +TL+ G+  LD +L++L   + L G  AF LYDT+G PLD+  +I 
Sbjct: 356 GVQKQIKIEEEQFLRTLESGIKRLDAMLANLKPGDTLAGRDAFTLYDTYGFPLDLTIEIA 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLL 463
              G+  +D   F QALEEQ+ RARA +         + +   +L   YG T+F+GY+ L
Sbjct: 416 SEHGV-QVDTEGFEQALEEQQERARAAAAFSKELFKRSNEALAALAADYGGTKFVGYESL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     + VK ++   + +EEA +G +V+VV D+TPFYAE
Sbjct: 475 E-----------------------AQAQVKLLLVGEQTIEEAPAGTEVQVVLDRTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G    +G   +++  QK  +GIF+H A VE G L+   ++   +D   R   
Sbjct: 512 GGGQVGDAGVLEWEGGWARVSTTQKNPDGIFLHIARVEEGTLKAGSTVRALVDMHRR-DT 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LGSHV Q GS + PD LRFD +  +PI   +L  IE  VN  I
Sbjct: 571 EKNHTATHLLHAALRAVLGSHVQQKGSYVGPDRLRFDFSQFEPIAPRDLARIELLVNRWI 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             + PV       E+A   GA AL G KY D VRVVSVE     V S  LCGG HV  TG
Sbjct: 631 QADFPVSYTYKPLEEARKEGAMALFGEKYGDVVRVVSVEGAIDNVTSKELCGGCHVRRTG 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    IV+E S+ AG+RRIEA+TG  A  ++    ++L  L+  L  +  +++ RV ++
Sbjct: 691 EIGAFVIVAEESVAAGVRRIEALTGTGATQYVREMLDRLGGLSRELGTTPEHLLERVNKL 750

Query: 764 WEEYRKLQLIHAKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            +E +  +    K KL L           +S  +     +++  +  +++  L+   D L
Sbjct: 751 QDELKAREKEIEKLKLDLARAQLGGSAAGISLKEANGYRYLAVKLEGLEAGALRGAADEL 810

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV-------LGGGGG 868
             + Q+ ++ +          +++ V++  L+R  +A  + +  + V        G    
Sbjct: 811 LDRHQADLVAV-----GSGQHLVVKVSKKALERGLDAGAVMKKLSAVAGGRGGGRGA--- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVAS 894
                +AQ GG +  KA  A+  V  
Sbjct: 863 -----LAQGGGFDLEKAFGALEQVLE 883


>gi|326382143|ref|ZP_08203835.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198873|gb|EGD56055.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 900

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/933 (34%), Positives = 481/933 (51%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F + GH  +PS+SLI  +DP L+F N+GMVPFK  F G + P Y   
Sbjct: 1   MQTHEIRKRFLDHFIRAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGDQTPPYDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFK  AI  AW LLT      
Sbjct: 60  TSVQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWKLLTDSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +D  +L+ TVY +D+EA  +W+   G+ A++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGIDPTKLWPTVYLDDDEAESIWRDEIGVPAERIQRRGMADNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+              LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTSKDDYEILGPLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ DL K +I  + ++TG  Y      + V  RVI DH R+++ LI 
Sbjct: 235 ERVACLLQGVDNVYETDLMKPIIDLAAELTGRAYGAGNHEDDVRFRVIADHARTAAMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGY------------TEPLMMHLLPALCTEMGS 335
           DG++PAN+GRGYVLRR++RR +   RLLG               P M  ++  +   M  
Sbjct: 295 DGVVPANDGRGYVLRRLLRRIVRSIRLLGAGNEVSGPDGRGAANPTMERIISEVIDVMSP 354

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDT 393
           +YPEL Q +  I     +E+  F +TL  G  L         K     ++G  AF L+DT
Sbjct: 355 SYPELEQQRTHIVSVAVAEETTFARTLAAGSKLFSEAADATKKAGSSSISGTDAFTLHDT 414

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+  ++    GL  +D   F + + EQR+RA+A +    S   +   +      G
Sbjct: 415 YGFPIDLTLEMAAEAGLE-VDRDGFKELMGEQRARAKADASARKSSHADHSVYREFLDRG 473

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           AT+F G+D L                          + V  +V  G+ V  A  G ++E+
Sbjct: 474 ATEFTGFDELVS-----------------------EARVLGLVAGGQRVRSAAPGTELEL 510

Query: 514 VFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D++P YAEAGGQ+ D G    GDG+RL + DVQK  + +++H  +V+ G +     ++
Sbjct: 511 ILDRSPLYAEAGGQMADRGTITTGDGVRLAVKDVQKVGKKVWLHKVVVDEGEIVEGDEVL 570

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            ++D   R   +  HS TH++H AL  +LG   +Q GS   P  LRFD      +T A+ 
Sbjct: 571 ASVDAGWRHGATQGHSGTHMVHAALRQVLGPTATQAGSLNRPGYLRFDFHAGTGLTDAQR 630

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE   N  +  N  V T   +   A + GA AL G  Y DRVRVV +    GG  S  
Sbjct: 631 DEIEQIANQAVESNFAVNTFETDLAKAKSMGAMALFGENYGDRVRVVEI----GGPFSME 686

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV+S+ +I  + ++ ESS+ +G RR+EA  G  +  +L  +   +  LA+ LKV 
Sbjct: 687 LCGGTHVASSAQIGPITVIGESSVGSGTRRVEAYVGMDSFRYLSRERALMAGLAASLKVP 746

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDS 806
              V  RVE++  + ++ +      + +     +         + D   ++  +   VD+
Sbjct: 747 SEEVPDRVEQLVLKLKEAEKAVESLRAEQARAAVSGLIDEGATVGDTLVVAARVADGVDA 806

Query: 807 KELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
             L+ ++  L+ +I  ++ ++ L     + K    I  T+        A DL +  A ++
Sbjct: 807 NGLRGLVTDLRGRIADRNAVVALFSAV-DGKVPFAIGTTDAARGSGIKAGDLVKEVAPIV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+P +AQ  G +    D A+  +   +
Sbjct: 866 A-GRGGGKPDLAQGSGTDAAGIDAALVRLREVV 897


>gi|227534477|ref|ZP_03964526.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227187876|gb|EEI67943.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 914

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/921 (35%), Positives = 496/921 (53%), Gaps = 69/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 37  MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 96

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 97  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 152

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 153 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 208

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 209 GQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 266

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYE--GNNIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y     + V+ ++I DH R+ +F I DG
Sbjct: 267 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDG 326

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 327 ALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQK 386

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + SE+ RF +TLD G+ LL+ +++ L +D  + + G  AFKL+DT+G P+++  +    
Sbjct: 387 VIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQD 446

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            GL  +D+  F + +  QR RAR       S G+ +K+  S+      ++F G+  L   
Sbjct: 447 EGL-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSI---TTPSKFTGWTELDHK 502

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + ++ IV   ++ +    G   +++FD+TPFYAE GG
Sbjct: 503 H----------------------ASLQIIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGG 539

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G        +   ++DVQ    G  +H   V +G L       L++D   R+++S
Sbjct: 540 QVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLERGQQYWLSVDPLRRKKVS 598

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I 
Sbjct: 599 LNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIW 658

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LP+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  
Sbjct: 659 DALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSNA 713

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++
Sbjct: 714 LGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQL 773

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + +  Q   A  + +L  +          ++  +  ++  +      EL+ + D  + 
Sbjct: 774 QADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKA 833

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S I++L G     KA++L+ V +      F A DL +  A  +GGGGG GRP MAQ+
Sbjct: 834 KQASDILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGGG-GRPDMAQA 891

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N      A++   + + +
Sbjct: 892 GGKNPAGIPAALSEAKTVISQ 912


>gi|205355365|ref|ZP_03222136.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346599|gb|EDZ33231.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 842

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 503/895 (56%), Gaps = 58/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF   GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+TV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DVGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK            E   L+    +   ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 508 LDTQKFFNLNLSFIKAGEE--LKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A   +  Q E+L  +   LK +         +I    +KL+      K +L  
Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELKNN---------DILSGIKKLKNEILSLKNELKN 730

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +      +  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V 
Sbjct: 731 SSKTELDSKSIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV- 788

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +D+     A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 789 KDVP--LKAGTLVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 840


>gi|237714467|ref|ZP_04544948.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|229445631|gb|EEO51422.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
          Length = 871

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/917 (35%), Positives = 494/917 (53%), Gaps = 72/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ V
Sbjct: 1   MTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L+
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKLN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPCS
Sbjct: 121 PEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGMG
Sbjct: 179 EIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I 
Sbjct: 239 FERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEISGKDAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   G+  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD   
Sbjct: 419 LRENGMT-VNIEEFNEEMQQQKQRARNA-----AAIETGDWIVLKE--GTTEFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++  +   +                             ++V D TPFYAE+
Sbjct: 471 YEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAES 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   +
Sbjct: 503 GGQVGDTGVLVSEFETIEVVDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I 
Sbjct: 560 ANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARIR 619

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++TG
Sbjct: 620 ANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------TSIEFCGGTHVAATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + + 
Sbjct: 674 NIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLRIAIRKY 732

Query: 764 WEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQKK 819
            +E    K Q+    ++ +  +++     + +++ +  I   + + ++ +K++   L+ +
Sbjct: 733 LDENAGLKKQVEDFMKEKEAALKERLLKNVQEIHGIKVIKFCAPLPAEVVKNIAFQLRGE 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A +G
Sbjct: 793 ITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATAG 851

Query: 879 GPNGNKADQAIAGVASF 895
           G N +    A+  V   
Sbjct: 852 GKNADGLPAAVEKVLEL 868


>gi|15673706|ref|NP_267880.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|20532263|sp|Q9CEW0|SYA_LACLA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|12724742|gb|AAK05822.1|AE006402_10 alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|326407190|gb|ADZ64261.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 872

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/916 (35%), Positives = 481/916 (52%), Gaps = 69/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLE
Sbjct: 176 GEVYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G  Y  ++  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    L G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLLNLKSEGKDRLEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++ Q+ RARA  +  GS   +    S  E    ++F+  D       
Sbjct: 416 GFK-IDHEGFKVAMKAQQERARAAVVKGGSMGAQNETLSSIEV--ESEFLYEDKT----- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  +   +Q  EIV+E     K ++VFD TPFYAE GGQ+
Sbjct: 468 -------------------TQGKLLVSIQDDEIVDEVSG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G       ++   + DVQ    G  +H        L+   S  L ID + R  +  N
Sbjct: 507 ADHGVIKDAEGQVVANVLDVQHAPHGQNLHSVETLS-PLKVGESYTLEIDKERRAAVVKN 565

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+
Sbjct: 566 HTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQS 625

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI 
Sbjct: 626 LKVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIG 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IV E  I +G+RRI A+TGQ+A       +  L  +A+ +K  Q   V+ +V  + +
Sbjct: 681 LFKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATMVKAPQTSQVLAKVTSLQD 740

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E +  Q  +     KL  +  D     +     +NF++  ++  D+  L+++ D  ++K 
Sbjct: 741 ELKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKE 800

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    EK + ++   + D      A +L +  A  +  G GGG+P MA +GG 
Sbjct: 801 LSDVLVLVAKIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGS 855

Query: 881 NGNKADQAIAGVASFL 896
                 + +A VA  L
Sbjct: 856 KAAGIPELLAAVAEKL 871


>gi|167749584|ref|ZP_02421711.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702]
 gi|167657438|gb|EDS01568.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/909 (36%), Positives = 499/909 (54%), Gaps = 51/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P    V
Sbjct: 4   TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  ++ 
Sbjct: 64  TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EA  +W    G+  D+II++   DNFW     GPCGPCSEI FD+GE
Sbjct: 120 EDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHGS-GPCGPCSEIHFDRGE 178

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                     + E +R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+Q+ 
Sbjct: 179 KYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQDV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D  +++++    V G+ Y  +    V+ RVI DH+RS++F++ DGI P+NEGRG
Sbjct: 239 DNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG   P +  +   +  E  +AYPEL + +  I++ +++E+E F
Sbjct: 299 YVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEESF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            KT+D+G+ +L   +  L  D+    IL+G+  FKL+DT+G P+D+ ++IL  + + GID
Sbjct: 359 AKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKNI-GID 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + + EQ+++AR++    G G  E    +L      T F+GY  L           
Sbjct: 418 EERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S + A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD G  
Sbjct: 464 ------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDCGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  HLL 
Sbjct: 512 TAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLLQ 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT  +
Sbjct: 572 AALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVTEEL 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+SE+
Sbjct: 632 PIEEARKKGAMALFGEKYGDIVRVV-----QAGDVSTEFCGGTHLDNTAKAGLFKIISET 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLI 773
           S+ +G+RRIEA+TG    S        + ++A  LK  +   V+ + E +  E   +Q  
Sbjct: 687 SVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPTAVMQKCENMMNEMHAMQAE 746

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +        Q+        ++  +   S ++S V    L+   D L+    S I +L 
Sbjct: 747 IDRLNGIISMSQMKNVTEGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIAVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S  K   + I   E +    NA  + +  A + GG GG G+P  A +G  +  K D+A
Sbjct: 807 GVSDGKGNFLCIASPEAVAKGANAGKIVKEIAAIAGGKGG-GKPDTAMAGIADVTKIDEA 865

Query: 889 IAGVASFLK 897
           +  +   +K
Sbjct: 866 LLALTDIVK 874


>gi|189345755|ref|YP_001942284.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|189339902|gb|ACD89305.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 888

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/925 (35%), Positives = 507/925 (54%), Gaps = 69/925 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR +FL+FF    H+++ S+ +IP +DPTL+FTN+GM  FK++F G+    Y  
Sbjct: 1   MKS-REIRQSFLDFFAGKEHKIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L
Sbjct: 60  AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TV+ +D+E+F+LW+ ++ +  D I+R    DNFW M E+GPCGPCSEI  D  
Sbjct: 120 PKERLYATVFRDDDESFQLWQTVTDIPHDHILRFGEKDNFWEMGESGPCGPCSEIHIDLT 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E    G    +    R IE+WNLVF+Q+ +Q       LP+  +DTGMG ER+  V+Q K
Sbjct: 180 ED-GSGKSLVNVGDYRVIELWNLVFIQYNRQGDGRLEPLPQRHVDTGMGFERVCAVMQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            +NYD D+F+ L     ++TG+ Y    +    +  RVI DH R+ +F ++DG +P+NEG
Sbjct: 239 GSNYDTDVFRPLFDRITEITGVVYKATMDDPCDIAMRVIADHARTLTFALSDGAMPSNEG 298

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ Y++ LG +EP++  L+  L   MG  +PEL++ +  +   +R+E+E
Sbjct: 299 RGYVLRRILRRALRYSKTLGCSEPILHQLVGTLAVSMGEEFPELVKQQETVSRIVRAEEE 358

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TLDRG+ + + V++         + GD AF+LYDT G PLD+ + +    G   +D
Sbjct: 359 SFLATLDRGIEIFNEVIAGARAAGAAAITGDDAFRLYDTFGFPLDLTRLMAAEAGFE-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQ++RAR           +   +    +   + F GYD L     +     
Sbjct: 418 EPGFEHCMQEQKTRARQDRKDKRQLQEDGGEWMWFSEERTSVFTGYDSLEELSSI----- 472

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + V  +              +V +V D+TPFYAE+GGQ GD G  
Sbjct: 473 ---------------AGVSMLP------------DRVLLVLDRTPFYAESGGQSGDCGWI 505

Query: 535 IGDGIRLQITDVQKKAEGIFV-----HHAIVERGILRTEMS-------LVLTIDYQNRRQ 582
                RL+++D +K  + I       H    +  I   ++S          ++D  NR+ 
Sbjct: 506 ETAEYRLKVSDTRKDGDAIVHVVTEAHDTARDSAIDPADVSFDGGKLACRASVDRANRQG 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL  ILG HV Q GS ++ + LRFD +H   +TS EL+S+E  VN+ 
Sbjct: 566 TERNHTATHLLHAALRRILGQHVQQKGSFVSAERLRFDFSHFSKLTSGELESVESEVNEQ 625

Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I     V+    +  ++A+  GA A  G KY DRVRVV +        S  LCGGTHV S
Sbjct: 626 IRSAETVIKHQDVPYDEALGKGALAFFGDKYADRVRVVEIPG-----LSIELCGGTHVDS 680

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRV 760
            G+I L  IVSESS+ +G+RRIEA+TG+ A   +  +  +L+ +   LK+     V  ++
Sbjct: 681 IGQIGLFKIVSESSVASGVRRIEALTGKAAEQLMWKEYRELQEIRHMLKLKAEEPVTAKI 740

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815
            E+ E  ++L+ +  + +     + L     +  ++  +  M+ ++  VD++ L+    A
Sbjct: 741 VELAESKKELEKLLQEYRSSALADILLHALDASEEVNGIRIMARMLDHVDAEALRQATLA 800

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPH 873
           L++K+     +L  +  E K S++    +  +     +A  L R +AK + GG GGG+P 
Sbjct: 801 LREKVAGSAGILCTV-DEGKVSLIAFAGDRAVRDFGIDAGKLVREAAKNVQGG-GGGKPE 858

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
            A +GG N    ++A     + +++
Sbjct: 859 FATAGGKNPEGIEKAFEVFVAAVRE 883


>gi|255690436|ref|ZP_05414111.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260623884|gb|EEX46755.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 872

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++  +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSDTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN+ +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMI-VNIEEFNEEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIRQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNTP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     I +VN +  I   + + ++ +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAALKERLLKNIQEVNGVKVIKLCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSTDNGKPMLTVMLSDNLVATGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNADGLPAAVEKVIEL 869


>gi|226949919|ref|YP_002805010.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|226843074|gb|ACO85740.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 879

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  + ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIRAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGIIVTYNTPFYAEMGGQTGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|281492315|ref|YP_003354295.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|281375979|gb|ADA65470.1| Alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
          Length = 872

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/916 (35%), Positives = 481/916 (52%), Gaps = 69/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLE
Sbjct: 176 GEVYDPEHMGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G  Y  ++  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    L G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKSEGKDRLEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   ID   F  A++ Q+ RARA  +  GS   +    S  E    ++F+  D       
Sbjct: 416 GFK-IDHEGFKVAMKAQQERARAAVVKGGSMGAQNETLSSIEV--ESEFLYEDKT----- 467

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                  +   +Q  EIV+E     K ++VFD TPFYAE GGQ+
Sbjct: 468 -------------------AQGKLLVAIQDDEIVDEVSG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G       ++   + DVQ    G  +H        L+   S  L ID + R  +  N
Sbjct: 507 ADHGVIKDAEGQVVANVLDVQHAPHGQNLHSVETLS-PLKVGESYTLEIDKERRAAVVKN 565

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  I+G+H  Q GS    + LRFD TH   +T  EL  IE  VN++I Q+
Sbjct: 566 HTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQS 625

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V T   +   A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI 
Sbjct: 626 LKVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIG 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IV E  I +G+RRI A+TGQ+A       +  L  +A+ +K  Q   V+ +V  + +
Sbjct: 681 LFKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATLVKAPQTSQVLAKVTSLQD 740

Query: 766 EYRKLQLIHAKR--KLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E +  Q  +     KL  +  D     +     +NF++  ++  D+  L+++ D  ++K 
Sbjct: 741 ELKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKE 800

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++LV    EK + ++   + D      A +L +  A  +  G GGG+P MA +GG 
Sbjct: 801 LSDVLVLVAKIGEKVSLLVASKSSD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGS 855

Query: 881 NGNKADQAIAGVASFL 896
                 + +A VA  L
Sbjct: 856 KAAGIPELLAAVAEKL 871


>gi|154250174|ref|YP_001410999.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|205830091|sp|A7HN59|SYA_FERNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|154154110|gb|ABS61342.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 867

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/908 (40%), Positives = 537/908 (59%), Gaps = 56/908 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                 IR  +L FF+K GH+ LPS+SLIP +DP LMFT +GMVPFK IF G+  PVY  
Sbjct: 3   FMTSDEIREAYLSFFEKKGHKRLPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKCVR     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +TK  ++
Sbjct: 62  VTTCQKCVRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKQEAIEWAWEFVTKVLEM 117

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
            + +L+++VY+ D+EA+++W+K+ G+   KI+R++  DNFW     TGPCGPCSEIF+D 
Sbjct: 118 PEEKLWVSVYEYDDEAYEIWRKL-GVPERKIVRMSKEDNFWGPAGPTGPCGPCSEIFYDT 176

Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           G  +P   G  P  +    RYIEIWNLVF +F Q  +     LP+ +IDTG GLER++ +
Sbjct: 177 GVEVPVPEGQDPTPANTDGRYIEIWNLVFTEFYQDEEGNLHPLPRKNIDTGAGLERISAM 236

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q    N+D DLFK +I++ E V  + Y+ +    V+ RVI DH+RS +F+IADG+LP+N
Sbjct: 237 MQGVYWNFDTDLFKPIIESIENVLKVSYKSDKVKDVSIRVIADHVRSVTFMIADGVLPSN 296

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+ +  LLG  EP +  ++ ++  +MG  YPE+++ +  +E  ++SE
Sbjct: 297 EGRGYVLRRVLRRALRHGVLLGAKEPFLYKIVDSVVQKMGKIYPEIVEKQSFVENIVKSE 356

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           + +F   L RGL ++  +++  GK   ++ + AFKLYDT+G P+DI++DI    G   +D
Sbjct: 357 ELKFINNLSRGLEIVQKIVTTSGK---ISAEDAFKLYDTYGFPIDILRDIATENGYE-LD 412

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + LEEQR R+R    G      +  + +L      T F+GYD L           
Sbjct: 413 EKGFEKYLEEQRERSRKA-QGEVEFAQKTGYENL---GIETVFVGYDTLVS--------- 459

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGC 533
                          S V  I   GE VE+A     + E++ D TPFYAE GGQ+ DTG 
Sbjct: 460 --------------ESSVLKIRVNGEFVEKAEGNDLECELILDITPFYAEKGGQVADTGV 505

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                    +  V    EGI VH   +  G +     +   +D   R+    NH+ATH+L
Sbjct: 506 IKSQDGLFTVEYVYSPVEGIIVHRGKL-NGKISVNEKVQSQVDEIKRKSTMRNHTATHIL 564

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS + P  LRFD TH + +T  E+  IE+ VN++I + +PVVT I
Sbjct: 565 HSALRKVLGSHVRQAGSLVEPTRLRFDFTHYQALTKDEITKIENIVNEVILKAIPVVTEI 624

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + ++A+  GA AL   KY D VRVV V        S  LCGGTHV +TGEI L  IVSE
Sbjct: 625 KSYDEAVKEGAMALFEEKYGDFVRVVKV-----SDFSEELCGGTHVKNTGEIGLFKIVSE 679

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S++ AG+RRIEAITG  +  +L   +E  + L   L+  +  +V ++++I EE + L+  
Sbjct: 680 SAVSAGVRRIEAITGLNSLEYLRTDEELFEKLKLLLEAPKSEIVEKIQKILEEKKNLEKE 739

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + K +L   +    K+ + N + +++    +V+   LK ++D +  +I+   I+L+  
Sbjct: 740 IQEIKRKLINPEEIAKKVKEYNNIKYVVSVLEDVEPDILKDLIDNISDRIKG--IVLLIS 797

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K  V + V ++L   +NA ++A+L +KVLGGGGG G P  AQ+GG    K D+A  
Sbjct: 798 KMSDKIIVTVKVPKELTQDYNAGNIAKLVSKVLGGGGG-GSPTFAQAGGKLIEKIDEATE 856

Query: 891 GVASFLKK 898
                ++K
Sbjct: 857 LFEKIIRK 864


>gi|322806901|emb|CBZ04471.1| alanyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 879

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 518/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTNIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVTVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIEVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKKVEKVVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFIAMATKDTVAKGVHCGKIIKEVAAIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|148284335|ref|YP_001248425.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|205830167|sp|A5CD03|SYA_ORITB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146739774|emb|CAM79640.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 891

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/892 (43%), Positives = 535/892 (59%), Gaps = 40/892 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             N++ IRTTF+EFF+K GH    SSSL+P NDP+L F N+G+V FK+     E   Y  
Sbjct: 6   FLNINQIRTTFIEFFKKYGHHYASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSR 65

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFD 119
           V T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG    K   +QL W  LTKE  
Sbjct: 66  VVTCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWSFLTKELF 125

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D+ RL +TVY  D E  KLW+ I+GL   +IIRI T+DNFWSM   GPCGPC+EIF+D 
Sbjct: 126 IDEDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDH 185

Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G+ IPGGLPG+ +E G RY+EIWN+VFMQ+EQ N+  R  L K  IDTG GLER+ATVLQ
Sbjct: 186 GDKIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQ 245

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NYDIDLFK+LI   E +T +K  G    +HR+I DHLR+S+FLIADG++P+N+GRG
Sbjct: 246 GVYDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRG 305

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRIMRRAM     LG  EP+M  L+P L  EMG  Y EL   + LI   LR+E+E+F
Sbjct: 306 YVLRRIMRRAMNQIHQLGCKEPVMHQLVPGLINEMGDFYKELRIRQELITYLLRNEEEKF 365

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL +GL LL+    +L     L+G +AFKLYDT+G P D+ QDIL  R ++ I+   F
Sbjct: 366 KTTLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRSIS-INKTEF 424

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +Q + EQ++RAR    G GS   + +   LKE++ AT+F+GY L +              
Sbjct: 425 DQNMLEQQNRARQLWKGQGSNKEQLLLEKLKEEFRATEFVGYSLYQ-------------- 470

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTG 532
                       IV +++Q  + VE     Q      +  ++ +QTPFY ++GGQ+GD G
Sbjct: 471 ---------AEGIVISLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQMGDIG 521

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TD  K      VH   +  G +     + + ID Q R QL I+HSATH+
Sbjct: 522 IIKNNECTIHVTDTIKLFGCTHVHICKIVSGKININAVVHMAIDKQYRTQLQIHHSATHI 581

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG+H+ Q GS +  D LRFDV+H   I+   L  IE+ VN+II  N  V   
Sbjct: 582 LHAALREILGNHIIQKGSLVAYDYLRFDVSHPTSISREILTKIENRVNEIILNNTAVKLM 641

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           IM  + AIA GA AL   KY D VR +S+ E  D   +S  LCGGTHV  TG+I    I+
Sbjct: 642 IMPFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRIL 701

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES+I AG+RR+EAI G+          E L  +A    V++  ++ +++ I EE   L+
Sbjct: 702 SESAIAAGVRRVEAIAGKHVIKQARRNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLK 761

Query: 772 LIHAKRK-LQLNVEDLSCHKIAD----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K  QL + +     IAD    +  +   I + D + ++  +    K I++ +++
Sbjct: 762 KQLHQLKYNQLILCEKDIQNIADDIGTIKLVYKNIEDYDLQIVRKAVSNTTKNIKNLVMV 821

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++  + +KK +++I V++++ ++  A +L +     L GG GGG   +AQ G
Sbjct: 822 VIS-NNDKKNTIIIGVSDNITNKIQANNLVKEIINYL-GGSGGGSATLAQIG 871


>gi|312864541|ref|ZP_07724772.1| alanine--tRNA ligase [Streptococcus downei F0415]
 gi|311099668|gb|EFQ57881.1| alanine--tRNA ligase [Streptococcus downei F0415]
          Length = 873

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/915 (35%), Positives = 496/915 (54%), Gaps = 67/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF+++AI+  ++LLT    FDL
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDQAIEWGYELLTSPDWFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T Y +D++ +  W    G+ A  ++ I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PKDKLFVTYYPDDKDTYNRWIA-CGMEASHMVPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF    K   ++   LP  +IDTG GLER
Sbjct: 177 EDFDPDHVGLKLLAEDIENDRYIEIWNIVLSQFNADPKLDRKDYQELPSKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +V+ DH+R+ SF I DG L
Sbjct: 237 LAAVMQGAKTNFETDLFMPIIRKVEKLSGKTYDPDGDNMSFKVVADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M S YPE+++ +  I++ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVPTVGKIMESYYPEILEKQDFIQKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   L+ +L+ L     + L G   FKLYDT+G P+++ +++   +G
Sbjct: 357 KREEETFARTIDAGTGHLEELLAQLKADGKDTLEGKDIFKLYDTYGFPVELTEEMAQDKG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA  +   S   +                          +
Sbjct: 417 YK-IDHAGFQAAMKEQQERARAAVVKGSSMGMQN--------------------ETLAGI 455

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            E+     +K  +D      S +  I+   + V+EA +GQ+  +VF +TPFYAE GGQ+ 
Sbjct: 456 VEESTFSYEKEALD------SSLSVIIVDNKRVQEAETGQEALLVFKETPFYAEMGGQVA 509

Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G       ++  ++ DVQK   G  +H   +    L+   +  L ID++ R  +  NH
Sbjct: 510 DKGDIQDKAGQVLARVLDVQKAPNGQALHKVELL-ADLQVGQTYHLEIDHKRRYAVEKNH 568

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G+H +Q GS    + LRFD TH + +T+ EL+ IE+ VN  I Q +
Sbjct: 569 TATHLLHAALHKVIGNHATQAGSLNEEEFLRFDFTHFEAVTAQELRRIEEEVNQQIWQAV 628

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T   + + A   GA AL G KY   VRVV +     G +S  LCGGTH+ +T EI L
Sbjct: 629 AVKTIETDIDTAKEMGAMALFGQKYGKEVRVVMI-----GDYSIELCGGTHLGNTSEIGL 683

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             IV E  I +G RRI A+TGQ+A      Q++ LK +A+ LKV Q   V  +V  + E 
Sbjct: 684 FKIVKEEGIGSGTRRILALTGQQAFEAFRKQEDALKKVAATLKVPQLEQVPAKVASLNEA 743

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R LQ   A+ K +              + A   +++  +   D+  L++  D  ++   
Sbjct: 744 NRDLQKEVAELKEKAAAAAAGDVFKDVKEAAGHRYIASQVQVSDAGALRTFADKWKQADY 803

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     + K +VL+   +  +    A  L +  A ++  G GGG+P MA +GG  
Sbjct: 804 SDVLVLAAAIGQ-KVNVLVASKDKAVP---AGKLIKELAPIVS-GRGGGKPDMAMAGGSE 858

Query: 882 GNKADQAIAGVASFL 896
            +     +  VA  L
Sbjct: 859 PSAIQALLDAVADKL 873


>gi|239629711|ref|ZP_04672742.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239528397|gb|EEQ67398.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 878

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 497/921 (53%), Gaps = 69/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 1   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 61  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 117 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 172

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 173 GQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 230

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYE--GNNIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y     + V+ ++I DH R+ +F I DG
Sbjct: 231 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDG 290

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 291 ALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQK 350

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + SE+ RF +TLD G+ LL+ +++ L +D  + + G  AFKL+DT+G P+++  +    
Sbjct: 351 VIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQD 410

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            GL  +D+  F + +  QR RAR       S G+ +K+  S+      ++F G+  L   
Sbjct: 411 EGL-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSI---TTPSKFTGWTELDHK 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + ++ IV   ++ +    G   +++FD+TPFYAE GG
Sbjct: 467 H----------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGG 503

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G        +   ++DVQ    G  +H   V +G L T     L++D   R+++S
Sbjct: 504 QVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLRRKKVS 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I 
Sbjct: 563 LNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIW 622

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LP+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  
Sbjct: 623 DALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSA 677

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++
Sbjct: 678 LGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQL 737

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + +  Q   A  + +L  +          ++  +  ++  +      EL+ + D  + 
Sbjct: 738 QADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKA 797

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S I++L G     KA++L+ V +      F A DL +  A  +GGGGG GRP MAQ+
Sbjct: 798 KQASDILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGGG-GRPDMAQA 855

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N      A++   + + +
Sbjct: 856 GGKNPAGIPAALSEAKTVISQ 876


>gi|168180547|ref|ZP_02615211.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182668624|gb|EDT80603.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 879

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 518/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFKGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|153938938|ref|YP_001391861.1| alanyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|205830033|sp|A7GGF1|SYA_CLOBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152934834|gb|ABS40332.1| alanine--tRNA ligase [Clostridium botulinum F str. Langeland]
          Length = 879

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/908 (36%), Positives = 519/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFK+  I  AW+ +T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KDKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+         +E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E       G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++M+
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMD 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  I+SE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIISEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|148380519|ref|YP_001255060.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932600|ref|YP_001384806.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153937856|ref|YP_001388276.1| alanyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|205830027|sp|A7FWJ5|SYA_CLOB1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830031|sp|A5I4Z5|SYA_CLOBH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148290003|emb|CAL84122.1| putative alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928644|gb|ABS34144.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152933770|gb|ABS39269.1| alanine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 879

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 518/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDMDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  +IL+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|295106657|emb|CBL04200.1| alanyl-tRNA synthetase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 882

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/932 (34%), Positives = 495/932 (53%), Gaps = 91/932 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVYQ 59
            + + IR  +L +F+  G +  PSSSLIP +DP+L+ T++GMV FK  F  Q++    Y 
Sbjct: 4   MSTAEIREKYLSYFEAKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKQLEAPYV 62

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVR     ND+D +G T RH +FFEMLGNFSFG YFK+     A++  T+   
Sbjct: 63  GTTTAQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGAYFKKEMCAWAYEFSTEVLG 118

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L   RLY TVY +D+E  ++WK + G+  D I R+   DNFW    TGPCGPCSEI++DQ
Sbjct: 119 LPAERLYFTVYLDDDETIEIWKGL-GVPEDHISRLGEEDNFWRAGPTGPCGPCSEIYYDQ 177

Query: 180 GECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           GE    G P  +   + +R++E WNLVF Q++ Q       LPK +IDTGMGLER+A ++
Sbjct: 178 GEEFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGSFVPLPKKNIDTGMGLERIAAIM 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   +NY+ D+ + L+   E++TG  Y  + +  ++ R++ DH RS +F+IADGILP+NE
Sbjct: 238 QGVQSNYETDVLRSLVGVGERLTGAVYGADADADLSLRIMADHSRSVTFMIADGILPSNE 297

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+    LLG  +P +   +  +   MG  YPE+++ + L    + SE+
Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNEYVDEIVNLMGDVYPEIVENRELARRVILSEE 357

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERFG TL +G   LD  L+ + + E+L GD AF L+DT+G P+++ +++   RG+  +D+
Sbjct: 358 ERFGATLRQGRAFLDEALAGI-EGEVLPGDRAFTLHDTYGFPVEVTRELCGERGIE-VDM 415

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKED 472
             F + ++EQR RARA +             +   + E  G T+F+GY            
Sbjct: 416 EGFGRCMDEQRERARAANTKDAEAAWSTYGGVMNEILEAVGPTEFLGY------------ 463

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   + V AIV+ G+ V+   +G++  VV D TPFYAE GGQ+GDTG
Sbjct: 464 -----------TKNEADARVLAIVKDGQQVDVLEAGEEGRVVLDATPFYAEKGGQIGDTG 512

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVER----GILRTEMSLVLTIDYQNRRQLSINHS 588
               DG+ + + D ++  +G+  H   V      G ++   ++   ID   R ++  NH+
Sbjct: 513 VLAEDGVVVAVLDTKEPEKGLIAHTVKVMDEPAGGRIQVGDTVHAAIDVPRRERIRRNHT 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  +LG HV Q GS +    LRFD TH + +T+ ++  +E   N+ + +N P
Sbjct: 573 ATHILHWALRQVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANEKVMENHP 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V     +   A  +G  AL G KY + VRV+ +E       S  LCGGTHVS+T EI  +
Sbjct: 633 VRAYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFV 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I SE+S+ A +RRIEA+T   A +++   + +LK  A  L+V   +V  R     ++ +
Sbjct: 688 KITSETSVGANLRRIEAVTSFDALAYMNRVEAELKESAEALRVPLFDVSERTAANVKQLK 747

Query: 769 KLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +LQ    + +  +  + +S               +   + E D+ ++++  D L+ ++  
Sbjct: 748 ELQTKMKRNRQTIADDGISALVEGAVEAKGGYPVVFGRLPEADAGQMRNAWDVLRARLGK 807

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-- 879
               ++   K+ K ++L   T + +   F+A  + +  +                  G  
Sbjct: 808 PGAAVLATEKDGKPTLLAAGTPEAVEAGFDAGAVIKAIS------------------GNI 849

Query: 880 ---------------PNGNKADQAIAGVASFL 896
                           + +  D A+      L
Sbjct: 850 KGGGGGKAAMAQAGGKDASGIDAALEAAREML 881


>gi|225870098|ref|YP_002746045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225699502|emb|CAW93052.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 872

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 502/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIFFD+G
Sbjct: 121 PKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L +     L+G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKEKGQDRLDGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA ++  GS   +    +L      ++F+           
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T  V+S +  I+   E  E    GQ   +VFDQTPFYAE GGQ+ 
Sbjct: 463 -------------YETETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   +  ++ DVQK   G  +H   V    L  +    L ID++ R  +  NH
Sbjct: 509 DHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEVL-ASLALDTVYTLAIDHKRRYAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I + L
Sbjct: 568 TATHLLHAALHKVIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWKAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ EI L
Sbjct: 628 AITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  + E+
Sbjct: 683 FKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDILKEIAHTLKVPQIEQLPSKVVSLSEQ 742

Query: 767 YRKLQLI--HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R LQ      K K           K+ + N + +I SEV   D+  L++  D  +++  
Sbjct: 743 LRDLQKEMAELKEKAAAAQAGDVFKKVQEANGLRYIASEVSVSDAGVLRTFADNWKQRDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     E K +VL+  ++D   R +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A V   L
Sbjct: 858 ASKLSELLAAVPEHL 872


>gi|116494328|ref|YP_806062.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334]
 gi|122264244|sp|Q03B02|SYA_LACC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116104478|gb|ABJ69620.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334]
          Length = 881

 Score =  828 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 497/921 (53%), Gaps = 69/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 176 GQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYE--GNNIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y     + V+ ++I DH R+ +F I DG
Sbjct: 234 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 294 ALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + SE+ RF +TLD G+ LL+ +++ L +D  + + G  AFKL+DT+G P+++  +    
Sbjct: 354 VIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQD 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            GL  +D+  F + +  QR RAR       S G+ +K+  S+      ++F G+  L   
Sbjct: 414 EGL-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSI---TTPSKFTGWTELDHK 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + ++ IV   ++ +    G   +++FD+TPFYAE GG
Sbjct: 470 H----------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G        +   ++DVQ    G  +H   V +G L T     L++D   R+++S
Sbjct: 507 QVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLRRKKVS 565

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I 
Sbjct: 566 LNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIW 625

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LP+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  
Sbjct: 626 DALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSNA 680

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++
Sbjct: 681 LGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQL 740

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + +  Q   A  + +L  +          ++  +  ++  +      EL+ + D  + 
Sbjct: 741 QADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKA 800

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S I++L G     KA++L+ V +      F A DL +  A  +GGGGG GRP MAQ+
Sbjct: 801 KQASDILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGGG-GRPDMAQA 858

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N      A++   + + +
Sbjct: 859 GGKNPAGIPAALSEAKTVISQ 879


>gi|313887310|ref|ZP_07821001.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923229|gb|EFR34047.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 871

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/921 (36%), Positives = 500/921 (54%), Gaps = 76/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+++GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G ++P Y+  
Sbjct: 1   MTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI+ AW  LT+   L 
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV+          D+EA   W + +  + D+II  +  DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    +      G    +++    IEIWNLVFMQ++++       LP   IDTGMG
Sbjct: 179 EIHIDLRSEEERQAVCGRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   +Q K +NYD DLF  LI+A E ++G +Y  N    +  RV+ DH+R+ +F IA
Sbjct: 239 FERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   EP++  LLP L   MG AYPE++  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDIL 405
           I   ++ E+E F +TL +GL LL+  +  L +D ++L+G  AF LYDT+G PLD+ + IL
Sbjct: 359 IASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELIL 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +D ++F++ ++EQ+           +      W  L E+   + F+GY+ L+ 
Sbjct: 419 SERGMT-LDQVAFDKLMQEQK-----SRARQAAAIDAADWEVLDEETTESTFVGYETLQI 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RKV  +K                                +VV  +TPFYAE G
Sbjct: 473 ETHILRYRKVADKKRSY----------------------------YQVVLAETPFYAEMG 504

Query: 526 GQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GD G  I  DG    I D  K+   + VH  I+       +   +  +  + R    
Sbjct: 505 GQIGDKGVLIAQDGTEYPIIDT-KRENNLPVH--ILSTLPANPKQPFIARVGDELRHLTE 561

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+HHAL  +LG+HV Q GS ++ D LRFD +H K +T  E+  +E  VN  I 
Sbjct: 562 ANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIR 621

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            + P   +  +    A   GA AL G KY D VRV+          S  LCGGTHV+STG
Sbjct: 622 ADRPRDEQRNVPIAKAKEMGAMALFGEKYGDEVRVIKYG------DSVELCGGTHVASTG 675

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I+SE SI AGIRRIEA+TG +A  ++   +E+L+           NV   ++ +
Sbjct: 676 QIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQ----LFNERLNNVPDPLKAL 731

Query: 764 -------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
                   E+ + ++     +  Q+ ++ L+         +  +   + S   K V   +
Sbjct: 732 DRLIAEGAEQRKAIEQYTKAQAEQIALQALADQTKHGETTIVTVNKPMSSDVAKDVAGTI 791

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++++Q   + L+G ++E K ++ ++++ DL+D+  NA  L +  A ++ GG GGG+PH A
Sbjct: 792 RERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLIKGG-GGGQPHFA 850

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG N      AI  + S +
Sbjct: 851 TAGGRNPEGLQAAIDHIVSLI 871


>gi|191637661|ref|YP_001986827.1| alanyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|301065839|ref|YP_003787862.1| alanyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|190711963|emb|CAQ65969.1| Alanyl-tRNA synthetase [Lactobacillus casei BL23]
 gi|300438246|gb|ADK18012.1| Alanyl-tRNA synthetase [Lactobacillus casei str. Zhang]
 gi|327381717|gb|AEA53193.1| Alanyl-tRNA synthetase [Lactobacillus casei LC2W]
 gi|327384883|gb|AEA56357.1| Alanyl-tRNA synthetase [Lactobacillus casei BD-II]
          Length = 881

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 497/921 (53%), Gaps = 69/921 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K F 
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K +G+  D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 176 GQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYE--GNNIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y     + V+ ++I DH R+ +F I DG
Sbjct: 234 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 294 ALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + SE+ RF +TLD G+ LL+ +++ L +D  + + G  AFKL+DT+G P+++  +    
Sbjct: 354 VIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGADAFKLFDTYGFPVEMTNEYAQD 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            GL  +D+  F + +  QR RAR       S G+ +K+  S+      ++F G+  L   
Sbjct: 414 EGL-QVDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSI---TTPSKFTGWTELDHK 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + ++ IV   ++ +    G   +++FD+TPFYAE GG
Sbjct: 470 H----------------------ASLQTIVVNDQLQDSVSEG-TAQLIFDETPFYAEMGG 506

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G        +   ++DVQ    G  +H   V +G L T     L++D   R+++S
Sbjct: 507 QVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLRRKKVS 565

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I 
Sbjct: 566 LNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIW 625

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LP+  + M  E+A   GA A+ G KY   VR+V +     G +++   GGTH +++  
Sbjct: 626 DALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSA 680

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  I SES I AGIRR+EA+T + A  +L  Q + L   A  LK+ Q  NV  +V ++
Sbjct: 681 LGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQL 740

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             + +  Q   A  + +L  +          ++  +  ++  +      EL+ + D  + 
Sbjct: 741 QADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKA 800

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K  S I++L G     KA++L+ V +      F A DL +  A  +GGGGG GRP MAQ+
Sbjct: 801 KQASDILVL-GTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVGGGGG-GRPDMAQA 858

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N      A++   + + +
Sbjct: 859 GGKNPAGIPAALSEAKTVISQ 879


>gi|268680286|ref|YP_003304717.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618317|gb|ACZ12682.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/894 (38%), Positives = 507/894 (56%), Gaps = 54/894 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            +R  FL+FF++ GH+++ SS L+P +D TL+FTN+GMVPFK++FTG+         TT 
Sbjct: 2   DVRAEFLKFFEQKGHKVIESSPLVP-DDATLLFTNAGMVPFKSVFTGEVPRPNPPRATTC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L + +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISHAWEFVTEVLKLPKEK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA ++W K   + A +I+R    DNFW M +TGPCGPCSEIF DQG E  
Sbjct: 121 LWVTVHESDDEAEEIWIK--HIDASRIMRFGDKDNFWQMGDTGPCGPCSEIFIDQGAENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+  V +   +N
Sbjct: 179 NTPEDYMGGDGDRFLEIWNLVFMQYERDKEGNLHPLPKPSIDTGMGLERVTAVQEGVFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  LF  L     ++ G  Y      ++RVI DH+RS +FL+A G+     GRGYVLRR
Sbjct: 239 YDSSLFIPLTSKVAELCGKAYAYKTGASYRVIADHIRSVAFLVAQGVSFGRVGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  LL  LC  MG  YP L+  K  + E +++E+E F  T+ 
Sbjct: 299 ILRRAVRHGYLLGLREPFMYKLLDTLCDLMGKQYPYLVAKKEGVAEQIKNEEESFFTTIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L +  L +     + +G+VAFKLYDT+G PLD+  D+L  +GL+ ++   F   + 
Sbjct: 359 SGLELFEKELPNTKA--MFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VNEAEFEALMA 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++R++A   G G   T   +  L EK+G   F+GY                       
Sbjct: 416 EQKARSKASWKGSGDKATHGEFKPLLEKFGLNTFVGYTQKEVK----------------- 458

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + ++  + +  + VE     +   V+F++TPFYA +GGQ GD G   G G   ++
Sbjct: 459 -----TKVLALLDENFKEVESL--DENGWVMFEKTPFYAMSGGQCGDEGSIEGYG---KV 508

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D +K  + + +    +E+  L     + L +D  +R ++  +HSATHLLH AL TILG 
Sbjct: 509 LDTKKFFD-LNLSLVELEK-PLHVNDEVALVVD-LSRLEIEKHHSATHLLHSALRTILGD 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +  + LRFD +H K ++  EL +IE  VN IIA  +   T++MN E+A  SG
Sbjct: 566 HVAQAGSLVEKERLRFDFSHPKALSHEELSNIEAFVNRIIASGVAGETKLMNIEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY   VRVVS      G  S  LCGGTHV +   I   +I+ ES + AG+RRI
Sbjct: 626 AMALFGEKYGSEVRVVSF-----GDASIELCGGTHVENVANIGSFFILKESGVSAGVRRI 680

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EAI G  A ++      +++++   +K      +  +  + EE + L+        Q   
Sbjct: 681 EAICGGAALAYAQALRTEMEAIKESVK--HKEPLIGINRLKEEIKSLKTEVESLNAQAGK 738

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              S H    VN +  I+  + + ++K+ +D L+ + +S  ++L+ + KE K  +   V 
Sbjct: 739 AVESLH----VNGVELIVDVLGAGDIKARIDDLKNEKESVAVLLLQV-KEDKVLIAAGVK 793

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                   A    +  A ++GGGGG GR   AQ+GG + ++ ++A     ++ K
Sbjct: 794 NAP---IKAGAWIKEIAPIVGGGGG-GRDDFAQAGGKDASRVEEAKNAALAYAK 843


>gi|125624689|ref|YP_001033172.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363]
 gi|205830128|sp|A2RME6|SYA_LACLM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124493497|emb|CAL98475.1| AlaS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071483|gb|ADJ60883.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 872

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/916 (35%), Positives = 482/916 (52%), Gaps = 69/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FF+  GH + PS SL+P NDPTL++ NSG+   K  F G   P    +
Sbjct: 4   MTSAEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF+  AI  AW+LLT  + F+
Sbjct: 64  TNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFE 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT Y  D++ +  W ++ G+    ++ I   DNFW +   GP GP +EIFFD+
Sbjct: 120 FPAEKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIGA-GPSGPDTEIFFDR 175

Query: 180 GECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLE 231
           GE       G        E +RYIEIWN+V  QF       + E   LP+ +IDTGMGLE
Sbjct: 176 GEIYDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLE 235

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGI 290
           RM  ++Q    N+D DLF  +I+  E+++G  Y  ++  ++ +VI DH+RS SF I DG 
Sbjct: 236 RMVCIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP NEGRGYVLRR++RRA+ + + LG     +  L+P +   M S YPE+++ +  I + 
Sbjct: 296 LPGNEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQI 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +  E+E F +T+D G  L+D +L +L  +    + G   F+LYDT+G P+++ +++    
Sbjct: 356 IDREEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADIFRLYDTYGFPVELTEELAEDE 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   I+   F  A++ Q+ RARA  +  GS   +    S  E               SKF
Sbjct: 416 GFK-IEHEGFKVAMKAQQDRARAAVVKGGSMGAQNETLSSIE-------------VDSKF 461

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           + ED+K               + +   ++  E+V+E     K ++VFD TPFYAE GGQ+
Sbjct: 462 LYEDKK-------------AQAKLLVAIKDDELVDEVTG--KAQLVFDVTPFYAEMGGQV 506

Query: 529 GDTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G       ++   + DVQ    G  +H        L+   +  L ID + R  +  N
Sbjct: 507 ADHGVIKNADGQVVATVLDVQHAPHGQNLHSVETIS-PLKVGETYTLEIDEERRSAVVKN 565

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  I+G+H  Q GS    + LRFD TH   ++  EL  IE  VN++I Q+
Sbjct: 566 HTATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQS 625

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V T       A   GA AL G KY   VRVV +     G +S  LCGGTH  +T EI 
Sbjct: 626 LKVETIETYIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIG 680

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWE 765
           L  I+ E  I +G+RRI A+TGQ+A       +  L  +A  +K  Q   +V +V  + +
Sbjct: 681 LFKIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQD 740

Query: 766 EYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E +  Q  +     +L          +  +   V+F++  ++  D+K L+++ D  ++K 
Sbjct: 741 ELKAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKE 800

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S I++LV    EK + ++   + D      A +L +  A  +  G GGG+P MA +GG 
Sbjct: 801 LSDILVLVATIGEKVSLLVASKSLD----VKAGNLVKELAPFV-DGRGGGKPDMAMAGGS 855

Query: 881 NGNKADQAIAGVASFL 896
           N     + +  VA  L
Sbjct: 856 NAAGIPELLTAVAEKL 871


>gi|325954950|ref|YP_004238610.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437568|gb|ADX68032.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 869

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 506/919 (55%), Gaps = 72/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL FFQ+  H ++ S+ ++  +DPTLMF NSGM  FK  F G   P    
Sbjct: 1   MKS-KDIRKEFLNFFQQRNHLIVDSAPIVLKDDPTLMFNNSGMAQFKEYFLGNATPKSNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDLD+VG+   HHT FEMLGN+SFG YFK+ AI  AW+LLT  + +
Sbjct: 60  IADTQKCLRVSGKHNDLDDVGKDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTGTYGI 119

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + ++Y+TV++ DE        EA  LWK+   ++ D+I+     DNFW M + GPCGPC
Sbjct: 120 GKDQIYVTVFEGDEKDGTQLDQEALDLWKE--HIAEDRILLGNKKDNFWEMGDVGPCGPC 177

Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++  + IEIWNLVFMQ++++       LP   IDTGM
Sbjct: 178 SEIHVDIRPEEERLAVDGKSLVNQDHPQVIEIWNLVFMQYQRRADGSLEPLPAKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+A VLQ KT+NYD D+F+ LI+  E+++G+ Y  N I +   RV+VDHLR+ SF I
Sbjct: 238 GFERLAMVLQGKTSNYDTDVFRPLIKKLEKISGITYGDNEITDIAIRVVVDHLRAVSFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y  R L   EP +  L P L  EMG  +PELI+ + 
Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAISYGYRFLNLKEPFIYLLFPILKDEMGDFFPELIKQES 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           ++   +R E+  F +T++ GL  L+ ++      +++ G V F+LYDT+G P D+ + ++
Sbjct: 358 IVTGVIREEESSFLRTIEHGLNRLNQIIDQYQDTKVVPGHVVFELYDTYGFPADLSRIVV 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
                  ID   F   + +Q++R++  +        E   + +  +    +F+GYD+L  
Sbjct: 418 EDHNFT-IDEDGFEVEMSKQKARSKKAT------ALETDDWVIVRENANEEFVGYDILST 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RKV  +K                            G+  ++V D+TPFYAE+G
Sbjct: 471 EVQITRYRKVKNKK----------------------------GEFYQLVLDKTPFYAESG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG  I    ++++ + +K+   + +H   VE+     E +    +D   R +   
Sbjct: 503 GQIGDTGLLISANEQIEVLNTKKE-NNLIIHF--VEQLPSNIEATFQAEVDSITRNETQK 559

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL T+LG+HV Q GS + PD LRFD +H   +T+ E+  +E  VND I  
Sbjct: 560 NHSATHLLHEALRTVLGTHVEQKGSYVGPDYLRFDFSHFGKMTTEEIAEVEKIVNDRIVA 619

Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++P+   R +  ++A++ GA AL G KY D VR++          S  LCGGTHV +T +
Sbjct: 620 SIPLDEKRNIPFDEAVSQGAMALFGEKYGDYVRLIKFGS------SVELCGGTHVKNTSD 673

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L  I SESS  AGIRRIEAIT   A   L   ++  +S+   LK    +    V+++ 
Sbjct: 674 IRLFKITSESSTAAGIRRIEAITSNAAIDVLKEAEKNYQSVLDTLKTK-SDAKKAVQQLL 732

Query: 765 EEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQKKI 820
           +E  +L+    K   +     ++    ++ ++N +  +   ++++++  K     L  ++
Sbjct: 733 DENAQLKKQVEKFVAQQAKAEKENWKQQVKNINGIQFLAIKTDLNTQSAKQNAIDLTNEL 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +  +++       K S+ I + ++L+   + NA  + R  AK +  G GGG+  +A +G
Sbjct: 793 DNAFVVVA-TKDAVKPSITISIAKNLVEEKQLNAGQIVREIAKNI-QGSGGGQAFLATAG 850

Query: 879 GPNGNKADQAIAGVASFLK 897
           G +    D+A+A   +F++
Sbjct: 851 GKDVTGIDKALAQAETFVQ 869


>gi|170755913|ref|YP_001782179.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|205830032|sp|B1IJG7|SYA_CLOBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169121125|gb|ACA44961.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 879

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/908 (36%), Positives = 519/908 (57%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFK+  I  AW+ +T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KDKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+         +E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E       G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GNFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|307326782|ref|ZP_07605974.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887545|gb|EFN18539.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 890

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/923 (35%), Positives = 504/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  VSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSSQEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ITVY++D+EA ++W+++ G+ A++I R+    N+WSM   GPCGPCSEI 
Sbjct: 116 GYGLDPERLWITVYEQDDEAERIWREVIGVPAERIQRLGMGPNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GEEGGPAVNDERYVEIWNLVFMQYERGAGEGKENFPILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG+ Y     + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVMDKATELTGVAYGAAHESDVSLRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   R+LG TEP++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRILGATEPVVGELVDVVLKTMGQQYPELLTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G T+F GY    G
Sbjct: 415 EQGLS-VDEAGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADSSGLTEFTGYSHTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVSSPAAGEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG    D G  +++ DVQ+   G+ VH  +V+ G +     +   ID   RR ++
Sbjct: 511 GQLADTGRITLDTGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGAGVHARIDITRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGGVLMDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY DRVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVSAEVMSMDEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQK 818
            + ++ +    + + +              DV   + + ++V     + +L+ ++  ++ 
Sbjct: 746 GKLKEAEKEIERFRAEKVLQAAAGLAQGAKDVRGTALVAAKVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIPGDRPAVVALFTVAGGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N +   +AI  V   + +
Sbjct: 865 QGGGQNPDAVGEAIEAVERLVTE 887


>gi|152991942|ref|YP_001357663.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|205830233|sp|A6Q747|SYA_SULNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151423803|dbj|BAF71306.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 857

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/901 (39%), Positives = 524/901 (58%), Gaps = 59/901 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR TFL++FQ  GH+L+PSS L+P +DPTLMFTN+GMV FKNIFTG+   P     T+ 
Sbjct: 2   DIRKTFLDYFQSKGHKLVPSSPLVP-DDPTLMFTNAGMVQFKNIFTGEAPIPNPPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122
           Q C+RAGGKHNDLDNVG T RHHT FEMLGNFSF  YFKE AI  AW+ +T  K  DL  
Sbjct: 61  QTCLRAGGKHNDLDNVGYTARHHTLFEMLGNFSFADYFKEDAIAYAWEFVTDEKYLDLPV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181
            ++++TV+D D+EA+ +WKK   +S D+I+R    DNFW M +TGPCGPCSEIF+DQG E
Sbjct: 121 EKIWVTVHDSDDEAYDIWKKY--ISEDRIMRFGDKDNFWQMGDTGPCGPCSEIFYDQGAE 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                      EG+R++EIWNLVFMQ+E+  K     LPK SIDTGMGLER+  + +   
Sbjct: 179 HFHSEEDVMGGEGDRFLEIWNLVFMQYERDEKGTLNPLPKPSIDTGMGLERVVAIKEGVF 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NNY   LF   ++   ++ G  Y+ +  N  ++RVI DHLRS SFL+A G+    EGRGY
Sbjct: 239 NNYHSSLFMPFLEKIGELVGKPYDFDAPNSASYRVIADHLRSVSFLLAQGVNFDKEGRGY 298

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRA+ +  LLG  EP M  L+  L   MG  Y  L      I+ +++ E+ERF 
Sbjct: 299 VLRRIMRRAIRHGYLLGLREPFMYKLVDTLVDLMGKQYDYLASRAEAIKTSMKMEEERFF 358

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T++ G+ L +  L +    ++ NG+VAFKLYDT G PLD+ +D+L  + +  +DI +FN
Sbjct: 359 ETIEAGIKLFNEELKNT--QDVFNGEVAFKLYDTFGFPLDLTEDMLREKNIR-LDIDAFN 415

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E Q+++++A+  G G   T   +  LKE++   +F+GY+                  
Sbjct: 416 KKMEAQKAQSKANWKGTGDAATTGDFKLLKEEFNTNEFVGYETQE--------------- 460

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGD 537
                   V++ V A++ +     +A++G K  V+ ++TPFYAE+GGQ+GD G      +
Sbjct: 461 --------VTTKVLALLDENFKKTDAING-KGWVLLEKTPFYAESGGQVGDKGKLEIRNE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ D +K  +     +     G L     +   +D   R ++  +HSATHLLH  L
Sbjct: 512 KLEIRVLDTKKFLD----MNLSEVEGKLSVGDEVKAVVDPS-RVEIEKHHSATHLLHAGL 566

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG H++Q GS      LRFD +H K +T+ E++ +E  VND I++ +P  T IM+ +
Sbjct: 567 RAILGDHIAQAGSLNDDKRLRFDFSHPKAMTAEEIEKVEAWVNDKISRAIPRKTEIMSVD 626

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  +GA AL G KY + VRVVS+     G  S  LCGGTHV +T +I L  I  ES + 
Sbjct: 627 EAKKAGAMALFGEKYGNEVRVVSM-----GDASIELCGGTHVDNTAQIGLFMITKESGVS 681

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEAI G+ A   +    E+L  +   +K    N +  + ++ E+ + L+   A  
Sbjct: 682 AGVRRIEAICGRAAVEKVKALREELSQIKEEVKNQ--NPIAGIAKLKEQIKTLKSEVASA 739

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                 E  + +        + I+ EV + ++KS++D ++ K  +  +ML     +K   
Sbjct: 740 MSASQKELSTVNVNGV----NVIVEEVQTGDIKSMIDDVKNKYDNVAVMLFQKKGDK--V 793

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +L   +++      A D  +  A ++GGGGG GRP  AQ+GG + ++   A+     +L 
Sbjct: 794 LLAAGSKNTP--IKAGDWIKAIAPIVGGGGG-GRPDFAQAGGKDASRITTALEEAKVYLS 850

Query: 898 K 898
           +
Sbjct: 851 E 851


>gi|60680248|ref|YP_210392.1| alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|81316682|sp|Q5LHE6|SYA_BACFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|60491682|emb|CAH06434.1| putative alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
          Length = 872

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/918 (36%), Positives = 490/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNVEEFDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+     +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTP-DLGVAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  V++     + ++N +  I     + ++ +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLPMPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 852 GGKNPDGLNAAVEKVLEL 869


>gi|239617978|ref|YP_002941300.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506809|gb|ACR80296.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 873

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/906 (37%), Positives = 508/906 (56%), Gaps = 50/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL+FF+   H +LPS+SLIP NDP LMFT +GMVPFK IF G+ +P Y  V
Sbjct: 4   MTGHEIRESFLKFFESKKHTILPSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   + 
Sbjct: 63  ATCQKCVRTV----DIDNVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWAWEYITEVLKIP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + +L+++VY +D+EA+++W+   G+S  +I+R+  +DN+W     TGPCGP SEIF D G
Sbjct: 119 EDKLWVSVYHDDDEAYEIWRNNVGISEKRIVRLGKDDNWWGPAGPTGPCGPSSEIFVDTG 178

Query: 181 ECIPGGL---PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                        + +  R++E WNLVF ++          L K +IDTG+GLERMA ++
Sbjct: 179 RTKDCPDVENCSPACDCGRFLEFWNLVFTEYNMDGDGNLTRLKKKNIDTGLGLERMAAIM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q  ++N++ D+FK +++  E +  +KY     + V+ RVI DH R+ +FLI DG+LP+NE
Sbjct: 239 QGVSSNFETDMFKPIVERIEGLLNVKYGVSDKSDVSIRVIADHSRAITFLITDGVLPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRIMRRA+ +  LLG ++P +  +   +   +G  YPE+ +   L+EE    E+
Sbjct: 299 GRGYVLRRIMRRAIRHGSLLGSSKPFLYKIPEVVVVTLGDVYPEIKEKLSLVEEITLKEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  T + G   L  ++    K   L+G+  F L+DT+G  L+++++I+  + L  +D 
Sbjct: 359 ERFLTTFESGTKRLWQIVE---KKNRLDGEDLFLLHDTYGFHLELVEEIVAEKNLP-LDK 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR RAR  +  +        +    E  G T+F+GY+ L            
Sbjct: 415 EGFKALMEQQRERARKAAGNVEYEKDSSRYRKAYEIIGGTKFVGYEKL------------ 462

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V + +  I++  +I EE   G+K E++FD TPFY E GGQ+ D G   
Sbjct: 463 -----------TVKTKIAHILKDEKITEELSKGEKGELIFDITPFYPEKGGQVADRGIIK 511

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                 ++  V    + + VH  +V+ G +++     L +D +NRR  + NH+ATHLLH 
Sbjct: 512 TAEGFAEVEHVFIPFQDLIVHRVLVKSGKIKSGDLATLIVDKENRRSTARNHTATHLLHA 571

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ILG HV Q GS +  + LRFD +H   +   E++ IE+ VN  I + +PV     +
Sbjct: 572 ALRKILGEHVKQAGSLVEAERLRFDFSHYTALDKEEIQKIEELVNRKILEAIPVDVAEKS 631

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+       AL   KY DRVRVVS+     G  S  LCGGTHV +TGEI L  IVSESS
Sbjct: 632 FEEVKNEDVVALFQEKYGDRVRVVSI-----GDFSKELCGGTHVKNTGEIGLFKIVSESS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQ 771
           + AG+RRIEAITG ++   +      ++ L + L+V Q   V ++     ++ ++ ++L+
Sbjct: 687 VSAGVRRIEAITGLKSLEKMTELMNLVEELRAVLEVPQEAFVEKIINLNGKLKDQAKELK 746

Query: 772 LIHAKRKLQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            +  K         L     + D   ++ ++       +++  D L +K+  G+++L   
Sbjct: 747 RLKEKLLSGEGASSLERKLTLDDAQVLARVVENTSMDVVRNTADVLMQKLGKGVVILFNR 806

Query: 831 SKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             E  K   ++ V+++L  ++ A DLAR  A  LGGGGG GRP  AQ+GG    + +  I
Sbjct: 807 MPESGKVVFVVKVSKELQQKYRAGDLARKIATELGGGGG-GRPDFAQAGGKKIERVEWVI 865

Query: 890 AGVASF 895
             +  F
Sbjct: 866 KNLEKF 871


>gi|113953976|ref|YP_731956.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|122945499|sp|Q0I6G6|SYA_SYNS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|113881327|gb|ABI46285.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 893

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/913 (36%), Positives = 502/913 (54%), Gaps = 55/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ+K      T
Sbjct: 16  SGAEIRAAFLSFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQKRPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  F +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTDLFGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFNPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGLGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADLAGVDYHQLDDAGQTSLKVIGDHSRAVTQLICDGVSASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  AYP +I+ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIHQPFLVTMGQASIALLKDAYPSVIERQEVILAELQREESRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKLLADVLE--SKPKQISGAQAFELYDTYGFPLELTQEIAEEHGL-DVDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E+QR RA+A ++ +     + I   +     AT F GYDLL  S             
Sbjct: 427 QAMEQQRQRAKAAAVSIDLTLQDAIDQ-VAADLNATSFEGYDLLVQS------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                    SS V+A++  GE    A  G  V+VV D TPFY E GGQ+GD G  +GDG 
Sbjct: 473 ---------SSTVQALLVNGEAAASASDGDVVQVVLDNTPFYGEGGGQVGDRGLLVGDGP 523

Query: 539 ---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + + +   +  G+FVH   V+ G L     +   +D   RR+   NH+ATHLL  
Sbjct: 524 DGNGLIVVIEGVSRNRGVFVHSGRVQLGRLGVGDVVHGQVDRACRRRAQANHTATHLLQA 583

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++   + Q GS +  + LRFD    + +   EL+ IE  +N  I+    +    M 
Sbjct: 584 ALKQVVDEGIGQAGSLVNFERLRFDFHCPRAVKPEELEQIETLINGWISDAQSLEVNEMA 643

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A A+GA A+ G KY D V        D    S  LCGGTHV +T EI L  IVSES 
Sbjct: 644 IDQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVGNTAEIGLFKIVSESG 698

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  ++  +K L    K   G +V RV  + EE +  Q    
Sbjct: 699 VAAGIRRIEAVAGASVLAYLNEREVVVKQLGDRFKAQPGEIVERVVALQEELKNSQKALT 758

Query: 776 KRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V       +    +     +   +  V+   L+     L  ++     +++G 
Sbjct: 759 AARSELAVAKSAALAVQAVAVGKHQLLVARLDGVNGDGLQGAALGLLDQLGDATAVVLGG 818

Query: 831 SKE----KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +     K  ++    + ++     A       AK+ GGGGG GRP++AQ+GG +G   
Sbjct: 819 LPDPSDQGKVILVAAFGKAVIATGQQAGKFIGAIAKLCGGGGG-GRPNLAQAGGRDGAAL 877

Query: 886 DQAIAGVASFLKK 898
           D A+    + LKK
Sbjct: 878 DAALNTARAELKK 890


>gi|326800500|ref|YP_004318319.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326551264|gb|ADZ79649.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 871

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/919 (36%), Positives = 501/919 (54%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL FF+  GHE++PS+ ++  NDPTLMFTN+GM  FK +F G+    Y  V
Sbjct: 1   MTSREIRQAFLNFFKSKGHEIVPSAPIVVKNDPTLMFTNAGMNQFKELFLGEAPIKYSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT  + +D
Sbjct: 61  VDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTNVYKID 120

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++        ED EA+  WK+   + + +I++    DNFW M ETGPCGPCS
Sbjct: 121 KDRLYVTVFEGDSEEGLPEDAEAYGYWKE--HIDSTRILKGNKKDNFWEMGETGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    +   +  G    + +  + IEIWN VFMQF +        LP   +DTGMG
Sbjct: 179 EIHVDCRSDEERRMIDGSTLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ KT+NYD D+F+ LIQ   +   ++Y  N    +  RV+ DH+R+ SF IA
Sbjct: 239 FERLVRVLQSKTSNYDTDIFQPLIQLIAKAAKVQYGENEQQDIAMRVMADHIRAISFAIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L + EP +  L+  L  +    + EL + +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKEPFLNTLVIPLAQQFEGVFDELYKQQDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +++ +  E+  F +TL  G+   +   +  G   +++GD AF+LYDT+G P+D+   +  
Sbjct: 359 VQKVVLEEELSFLRTLVTGIQRFESYHTDQG---LVSGDFAFELYDTYGFPIDLTDLMAR 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G   +D+  F  AL +Q+ R+RA      +      W ++ E  G T F+GYD L   
Sbjct: 416 EKGWK-VDMPGFENALNKQKERSRAA-----TAIDTGDWVTVNED-GETHFVGYDNLATE 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             + + RKV  +                               + ++V  QTPFYAE GG
Sbjct: 469 TKILKYRKVSAKGKI----------------------------QYQLVLSQTPFYAEGGG 500

Query: 527 QLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+GDTG  I +  +  +QI D +K+  G+ +H +  +      E      +    RR + 
Sbjct: 501 QVGDTGILIHETSKETIQIVDTKKE-NGLIIHFS--DELPSHLEGVFFAKVAEDRRRDIQ 557

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG HV+Q GS ++ + LRFD +H   ++  EL+ +E  VN  I 
Sbjct: 558 SNHSATHLLHAALKQVLGEHVNQKGSLVSEEVLRFDFSHFAKVSDEELRRVEQVVNAKIR 617

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +NL +   R +   DAI  G  AL G KY D VRV+  +       S  LCGGTHV  TG
Sbjct: 618 ENLALDERRNVPYNDAIDMGVTALFGEKYGDFVRVIIFD----ENFSKELCGGTHVQYTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I+SE ++ AG+RRIEAITG+RA   +  QDE +  L + LK    ++   +  +
Sbjct: 674 NIGFFKILSEGAVAAGVRRIEAITGRRAEEIIDRQDELINELKNLLK-HPKDLSAAITGL 732

Query: 764 WEEYRKLQLIHAKRKLQLNVE--DLSCHKIADVNFMSHIISEV---DSKELKSVMDALQK 818
            +E  KL+    K  ++   +   +   K  D+N +  I  +V   ++  +K++  A++K
Sbjct: 733 LQENSKLKKEVEKSLVEKAQQLRQVLVEKAIDINGVRFIGEQVELPNADAVKNLAFAIKK 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            I +G+ +++    + K ++ +V+++DL++R  +A  + R  AK + GG GGG+P  A +
Sbjct: 793 AIDNGLFLVLAADFDGKPNLTVVLSDDLVNRGLDAGKIVRELAKEIKGG-GGGQPFYATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +    A+    SF+
Sbjct: 852 GGKDSSGLTVALEKAKSFV 870


>gi|153807409|ref|ZP_01960077.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185]
 gi|149129771|gb|EDM20983.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185]
          Length = 872

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAVMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMEDTKAAGKIEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  FN  +++Q+ RAR       +      W +LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNLEEFNAEMQQQKQRARNA-----AAIETGDWITLKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E   +  ++   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPFMACVNTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNARI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY DRVRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ IVSESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIVSESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    ++ +  +++     I +++ +  I   + + ++ +K++   L+ 
Sbjct: 733 YLEENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVIKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G +   K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSTDAGKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNADGLPAAVEKVLEL 869


>gi|312887198|ref|ZP_07746802.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311300510|gb|EFQ77575.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 927

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/972 (33%), Positives = 507/972 (52%), Gaps = 124/972 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH ++PS+ ++  NDPTLMFTN+GM  FK+IF G+E   +  V
Sbjct: 1   MTAQEIRQAFLDFFASKGHTIVPSAPIVVKNDPTLMFTNAGMNQFKSIFLGEEPVKFPRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q+C+R  GKHNDL+ VG  + HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + LD
Sbjct: 61  ADTQRCLRVSGKHNDLEEVGIDSYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEIYKLD 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T ++ DE        E  +LW++   ++ D I+     DNFW M ETGPCGPCS
Sbjct: 121 KSRLYVTYFEGDEKEGLAADTETLELWREF--VADDHILPGNKKDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQ----GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI +D           G    +   +  +EIWN VFMQF +        LP   +DTGMG
Sbjct: 179 EIHYDGRTDAERAQIDGATLVNGVDDSVMEIWNDVFMQFNRLKDGSLQPLPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY------------------------- 264
            ER+  ++Q KT+NYD D+F+ LIQ   + +G+ Y                         
Sbjct: 239 FERLVRIMQGKTSNYDTDVFQPLIQFIAEKSGIVYGPHPALSKGEGSDLQASEAHALKVL 298

Query: 265 -------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LG 316
                  E    V  RV+ DH+R+ SF IADG LP+N   GYV+RRI+RRA+ Y+   L 
Sbjct: 299 SFGEDLVEAKTDVAMRVMADHIRAISFAIADGQLPSNNKAGYVIRRILRRAVRYSYQYLN 358

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
           + EP +  L+P L  +    + EL+  K  +++ +  E+  F +TLDRG+   +  +   
Sbjct: 359 FKEPFLNQLVPILAQQFVGVFTELVNQKDFVQKVVLEEEVAFLRTLDRGINKFEEFIQKE 418

Query: 377 ------------------------GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
                                    K  I+ G+ AF+L DT+G PLD+ + +    G   
Sbjct: 419 AQEIELIKNLANDSSSSLPTAFKDSKTTIIRGNFAFELSDTYGFPLDLTELMAREIGWT- 477

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  +  AL +Q+SR+RA +        +   + L ++    +F+GY        + + 
Sbjct: 478 VDVEGYETALAQQKSRSRAAT------AIDTGDWILLKEDDTVEFVGYTETETIAHVVKY 531

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
           RKV  +                              ++ ++V D+TPFYAE+GGQ+GDTG
Sbjct: 532 RKVKAKGK----------------------------EQYQIVLDKTPFYAESGGQVGDTG 563

Query: 533 CAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
             I  DG  + +TD +K+  G+ VH   V++     + +L   +D   R+  + NHSATH
Sbjct: 564 ELIFPDGEIVPVTDTKKE-NGLIVHF--VDQLPEDIDDALTAMVDVDKRKATNNNHSATH 620

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LGSHV+Q GS +  + LRFD +H   +T  E+  IE  VN+ I +N+ V  
Sbjct: 621 LLHAALKEVLGSHVNQKGSLVNNEYLRFDFSHFSKVTDEEIARIEAIVNERIRENILVDI 680

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + + +E+AIA GA AL G KY D VRVV+++ +     S  LCGGTHV STG+I    I+
Sbjct: 681 QELPKEEAIAMGANALFGEKYGDTVRVVTMDMK----FSIELCGGTHVQSTGQIGFFKII 736

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES++ AG+RRIEAITG     +   Q + ++ L   LK +  NV   VE + +E  +L+
Sbjct: 737 AESAVAAGVRRIEAITGVAVEQYFNEQGKLIQQLKELLK-NPKNVAKSVEGLLDENSRLK 795

Query: 772 LIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               K   +               I  +NF++  +   ++  +K++  +L+  + + + +
Sbjct: 796 KELEKSVYEKAAGLKQVLAAKAEAINGINFIAQQVDLPNADAIKNLAYSLKDIVPN-LFL 854

Query: 827 LVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++    + K ++ +++ E L+     NA ++ R  AK + GG GGG+P  A +GG + + 
Sbjct: 855 VLTAQIDGKPNITVMIEESLVKEKGLNAGNIIRELAKEVQGG-GGGQPFYATAGGKDVSG 913

Query: 885 ADQAIAGVASFL 896
             + +    SF+
Sbjct: 914 LPRVLDKARSFI 925


>gi|291557844|emb|CBL34961.1| alanyl-tRNA synthetase [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/909 (36%), Positives = 498/909 (54%), Gaps = 51/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P    V
Sbjct: 4   TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  ++ 
Sbjct: 64  TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED EA  +W    G+  D+II++   DNFW     GPCGPCSEI FD+GE
Sbjct: 120 EDRLWVTIYEEDNEAGDIWANEVGVPRDRIIKLGKADNFWEHGS-GPCGPCSEIHFDRGE 178

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                     + E +R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+Q+ 
Sbjct: 179 KYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQDV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D  +++++    V G+ Y  +    V+ RVI DH+RS++F++ DGI P+NEGRG
Sbjct: 239 DNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+LG   P +  +   +  E  +AYPEL + +  I++ +++E+E F
Sbjct: 299 YVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEESF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            KT+D+G+ +L   +  L  D+    IL+G+  FKL+DT+G P+D+ ++IL  + + GID
Sbjct: 359 AKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKNI-GID 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + + EQ+++AR++    G G  E    +L      T F+GY  L           
Sbjct: 418 EERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S + A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD G  
Sbjct: 464 ------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDVTPFYAESGGQVGDCGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  HLL 
Sbjct: 512 TAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLLQ 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT  +
Sbjct: 572 AALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILSGIPVVTEEL 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+SE+
Sbjct: 632 PIEEARKKGAMALFGEKYGDIVRVV-----QAGDVSTEFCGGTHLDNTAKAGLFKIISET 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLI 773
           S+ +G+RRIEA+TG    S        + ++A  LK  +   V+ + E +  E   +Q  
Sbjct: 687 SVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHAMQAE 746

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +        Q+        ++  +   S ++S V    L+   D L+    S I +L 
Sbjct: 747 IDRLNGIISMSQMKNVTDGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIAVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S  K   + I   E +    NA  + +  A + GG GG G+P  A +G  +  K D+A
Sbjct: 807 GVSDGKGNFLCIASPEAVAKGANAGKIVKKIAAIAGGKGG-GKPDTAMAGIADVTKIDEA 865

Query: 889 IAGVASFLK 897
           +  +   +K
Sbjct: 866 LLALTDIVK 874


>gi|224418366|ref|ZP_03656372.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827685|ref|ZP_04870570.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313141896|ref|ZP_07804089.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253511091|gb|EES89750.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130927|gb|EFR48544.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 853

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/896 (37%), Positives = 514/896 (57%), Gaps = 56/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            +R  FLEFFQ  GH++  S  L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 4   DVRALFLEFFQSKGHKIYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPTPSPNIATSA 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI  AW+ +T+     +  
Sbjct: 63  QLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEVLGFSKEV 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+T+++ D+EAF+LWK+   + +++I R+   DNFW M +TGPCGPCSEIF DQG E  
Sbjct: 123 LYVTIHESDDEAFELWKE--HIDSNRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGAEKF 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+  +     LPK SIDTGMGLER+  +L+ K++N
Sbjct: 181 NGPEDYFGGDGDRFLEIWNLVFMQYERDIEGNLKPLPKPSIDTGMGLERVMALLEGKSSN 240

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  LI   E++ G KY   +  + RVI DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 241 FDSSLFMPLIAKVEEIVGQKYFYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRR 300

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  +P +  +L ++C  MGS Y  L + K +I+   ++E+ERF +TL+
Sbjct: 301 ILRRAVRHGYLLGMRKPFVYEVLESVCENMGSHYHYLKEKKEIIKTQCKAEEERFFETLE 360

Query: 364 RGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            G+ L +  L  L K++   + +G++AFKLYDT+G PLD+ QD+L   G  G+DI SF  
Sbjct: 361 NGMNLFNKELEVLKKEKSKALFSGEIAFKLYDTYGFPLDLTQDMLRENGF-GVDIDSFEV 419

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++Q+ +A+A+  G G    E  + +L  K+G   FIGY+                   
Sbjct: 420 CMQKQKEQAKANWKGSGDSIQEGDFKTLLSKFGENVFIGYE------------------- 460

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    S + A++ +     + + G K  V+FD+TP Y ++GG +GD G  +     
Sbjct: 461 ----CAESKSKILALLDENFKEVKTLQG-KGYVMFDKTPLYPQSGGPIGDKGRILQQNEI 515

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           +      KK  G+ +      +  L     + + +  ++R +++ +HSATHLLH AL  +
Sbjct: 516 VATITDTKKYFGLNISTLETLK-PLEIGQEVWIEV-SKDRLEIAKHHSATHLLHKALREV 573

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H++Q GS +  + LRFD +H K ++  EL  +E  VN+ I +  P +  +M  E A 
Sbjct: 574 LGDHITQAGSLVESNRLRFDFSHPKALSYEELNKVELLVNEKILKANPQICEVMGIEAAK 633

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           + GA AL G KY + VRV+S         S  LCGG HV +T  I   YIV ES + +G+
Sbjct: 634 SKGAMALFGEKYGENVRVISFG------DSIELCGGIHVENTANIGSFYIVKESGVSSGV 687

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           RRIEA+ G+ A  +      ++ S    LK    N++  +++  E+ + L+      K +
Sbjct: 688 RRIEAVCGKAAYYYGKEALSEIASAKEMLKTQ--NLLEGIKKQKEQIKALKSQGGNSKNE 745

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           +N       KI ++N +S +I      ++K ++D ++ K +  +I+L+    ++   +  
Sbjct: 746 INNL-----KIQEINGISMVIQGFSGSDIKEIIDEIKNKYEKVVILLI----DESGRIAA 796

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            V         A    +  AKV+ GG GGGR   A +GG   +K ++A+     F+
Sbjct: 797 GVKNAP---IKAGIWVKEVAKVM-GGNGGGRDDFATAGGKALDKIEEALKKAKEFV 848


>gi|53712054|ref|YP_098046.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|253563907|ref|ZP_04841364.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265765389|ref|ZP_06093664.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|59798506|sp|Q64YB4|SYA_BACFR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|52214919|dbj|BAD47512.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|251947683|gb|EES87965.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263254773|gb|EEZ26207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
          Length = 872

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/918 (36%), Positives = 490/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNVEEFDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+     +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGVAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  V++     + ++N +  I     + ++ +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLPMPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 852 GGKNPDGLNAAVEKVLEL 869


>gi|256419492|ref|YP_003120145.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256034400|gb|ACU57944.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 871

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 511/918 (55%), Gaps = 70/918 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF   GH ++PS+ ++  NDPTL+FTN+GM  FK+ F G   P ++ V
Sbjct: 1   MTAPEIRQQFLDFFASKGHHIMPSAPIVVKNDPTLLFTNAGMNQFKDYFLGNRAPAWKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIDWSWELLTEVYKLP 120

Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++        +D+EAF+ WKK   +  D+I+     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVTVFEGDAKENLEKDQEAFEFWKK--HVPEDRILMGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D        +  G    + +  + IEIWN VFMQF +   +    LP   +DTGMG
Sbjct: 179 EIHVDCRPDSERALVDGKTLVNADDPQVIEIWNNVFMQFNRLKDRSLESLPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
            ER+  V+Q KT+NYD D+F   I  +E++TG+KY   +    V  RVI DH+R+ SF I
Sbjct: 239 FERLVRVIQGKTSNYDTDVFSGTIGHTEKLTGLKYGCTDSKPDVAFRVIADHIRAISFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L + +PL+  L+P L  +  + +PEL+Q   
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAVRYYFSFLNWKKPLLQDLVPVLAQQFANVFPELLQQVD 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ +  E+  F +TLD G+  ++  +    K++ ++G  AF+LYDT+G P D+   I 
Sbjct: 359 FVQKVVFEEENNFLRTLDSGIRRIEDFMG-AAKEKSVDGKTAFELYDTYGFPYDLTSLIA 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G +  D   F+ A++EQ+ R+RA +        +   +++  +   + F+GY+L   
Sbjct: 418 SENGFSA-DKEGFDAAMKEQKDRSRAAT------ELDMGDWTVLNENAESVFVGYELSET 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              + + RK+  +                              ++ ++V  QTPFYAE+G
Sbjct: 471 ETSVAKYRKIKAKGK----------------------------EQYQLVLSQTPFYAESG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG        +Q+TD +K+   + VH   V++       +    I+  NR   ++
Sbjct: 503 GQVGDTGILTFGAETIQVTDTKKE-NNLIVHF--VDKLPANITTTAKAVINKNNRLSTTM 559

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  +LG+HV+Q GS + P+ LRFD +H   ++  EL  IE+ VN+ I  
Sbjct: 560 NHSATHLLHAALRQVLGTHVAQKGSLVNPEYLRFDFSHFAKVSDEELAQIEEIVNEKIRA 619

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+PVV + + +E+A+  GA AL G KY D VRVV ++      +S  LCGGTHV STGE+
Sbjct: 620 NIPVVIKELPKEEALKLGAMALFGEKYGDVVRVVVMDPG----YSVELCGGTHVGSTGEL 675

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            +    SE ++ AG+RRIEA+TG+ A + +  Q ++LK + + LK +  ++V  V+ +  
Sbjct: 676 GIFKFTSEGAVAAGVRRIEAVTGRNALAFVNAQLQQLKDIKTALK-NPKDIVAVVDNLIN 734

Query: 766 EYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +   L+      +L+               +  +NF+  I+   +++ LK +   L+ +I
Sbjct: 735 DKAALEKRVEALELEKVRQLSAGLQAEVENVHGINFLGKIVDVNNAEALKQLCFTLKTQI 794

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + + +L   +   KA+V ++++++L+      A  + +     +  GGGGG+   A +G
Sbjct: 795 DNHVFILAA-NIGGKANVALMISDNLVAEKGLEAPKIIKEKIAPIIKGGGGGQKSFATAG 853

Query: 879 GPNGNKADQAIAGVASFL 896
           G    + DQ I  V + L
Sbjct: 854 GQEAGQLDQVITQVKAML 871


>gi|84496692|ref|ZP_00995546.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383460|gb|EAP99341.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 897

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/924 (36%), Positives = 498/924 (53%), Gaps = 67/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF+KNGH ++PS+ LI  +DP L+F N+GMVPFK  F+GQE P ++  
Sbjct: 1   METAEIRRRWLAFFEKNGHTVVPSAPLI-HDDPNLLFVNAGMVPFKPYFSGQETPPWERA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKKDAIRFAWQLLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TVY++D+EA +LW + + +  D+I+R    DN+W M   GP GPCSEIF
Sbjct: 116 GYGLDPDRLWATVYEDDDEAERLWAEYTSIPLDRIVRRGKLDNYWHMGVPGPGGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
           +D+GE   G   G + + +RY+EIWNLVFMQ E      + +      LP  +IDTGMGL
Sbjct: 176 YDRGEEY-GVEGGPAVDEDRYMEIWNLVFMQEELSQVRAKDDFDIEGPLPAQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ER+A+VLQ   N Y+ID    ++  + ++TG  Y  N          + V  RV+ DH+R
Sbjct: 235 ERIASVLQGVDNLYEIDEVYPVLAKAAEMTGKSYGANSGHSAQGSHPDDVRLRVVADHIR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P NEGRGYVLRR++RRA+   RLLG+ +P + HLLP     M  +YPEL
Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRSMRLLGFEDPALPHLLPISMERMKQSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
                 I +   +E+E F +TL  G  +LD  +S   +     L GD AF+L+DT+G P+
Sbjct: 355 ETGFERISKIAYAEEEAFRRTLASGTTILDTAVSRTKESGGTTLAGDQAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D   F + + EQR+RA+A +    SG      +      G T F 
Sbjct: 415 DLTLEMAEEHGLT-VDREGFTRLMLEQRNRAKADAKSKKSGHANTEVWKELRTSGETDFR 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
            +  L                          + V  +V  G  VEE   GQ+ +VV D+T
Sbjct: 474 AWQEL-----------------------TSEAKVVGLVVDGVRVEEIEPGQQGQVVLDRT 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PFYAE+GGQ+ D G    DG+ L++ DVQ+  +G+  H   V  G LR   +++  +D +
Sbjct: 511 PFYAESGGQIADEGIITADGVHLKVMDVQRPVKGLIAHTVEVVHGPLRAGSAVLAEVDPE 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R      HS TH++H AL  +LG    Q+GS   P  LR D    + ++      IE+ 
Sbjct: 571 WRISACQAHSGTHVIHAALRQVLGPSALQSGSYNKPGYLRLDFAWGQALSPETRSEIEEV 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  + ++LPV  + M+   A  +GA AL G  Y + VRVV +    GG  S  LCGGTH
Sbjct: 631 ANLAVRKDLPVSAQWMSLAQAREAGALALFGETYGEDVRVVEI----GGPWSRELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  + ++  L +  ESS+ +G+RR+EA  G  A  +L  +   +  L+  +    G +  
Sbjct: 687 VGHSSQVGALTVTGESSVGSGVRRLEAFVGMDALRYLARERAIVAELSGIVGAQPGELTE 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSV 812
           RV  +    +  +    + + Q  +        +   +  V F+ H    E  + +++++
Sbjct: 747 RVGAMVARLKDAERELERTRKQAVLAAAGSLSDNAKDVGGVRFVGHDAGGEAGADDVRAM 806

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869
           +   ++K+      +V ++   K   ++V+  +   R     A +L R++A+ LGGGGG 
Sbjct: 807 VLDARQKLGDAAPSVVAVTGGAKGRPVVVIATNQAARDKGIKAGELVRIAAQTLGGGGG- 865

Query: 870 GRPHMAQSGGPNGNKADQAIAGVA 893
           G+  +AQ GG +  K+ +AI  V 
Sbjct: 866 GKDDIAQGGGQDIAKSGEAINAVE 889


>gi|262527561|sp|A4W221|SYA_STRS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 872

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/919 (34%), Positives = 494/919 (53%), Gaps = 70/919 (7%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIGA-GPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G        G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +                       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN---------------------- 449

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
               +    +  +   +     + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 450 ----ETLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+ D G        I   + DVQK   G  +H   +    +    +  L I+ + R+ +
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVEL-SASISVGQTYTLEIETKRRKGV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I
Sbjct: 564 EKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQI 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T 
Sbjct: 624 WNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTA 678

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762
           EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE 
Sbjct: 679 EIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVES 738

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  D  +
Sbjct: 739 LAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWK 798

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +
Sbjct: 799 QKDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMA 853

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +     +  VA+ L
Sbjct: 854 GGSDASAIQTLLNSVANNL 872


>gi|146318890|ref|YP_001198602.1| alanyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|253751968|ref|YP_003025109.1| alanyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753793|ref|YP_003026934.1| alanyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|253755331|ref|YP_003028471.1| alanyl-tRNA synthetase [Streptococcus suis BM407]
 gi|205830232|sp|A4VVR3|SYA_STRSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145689696|gb|ABP90202.1| Alanyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|251816257|emb|CAZ51885.1| alanyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251817795|emb|CAZ55547.1| alanyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251820039|emb|CAR46252.1| alanyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|319758333|gb|ADV70275.1| alanyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 872

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/919 (34%), Positives = 493/919 (53%), Gaps = 70/919 (7%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIGA-GPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G        G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +                       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN---------------------- 449

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
               +    +  +   +     + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 450 ----ETLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+ D G        I   + DVQK   G  +H   +    +    +  L I+ + R+ +
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVEL-SASISVGQTYTLEIETKRRKGV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I
Sbjct: 564 EKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQI 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T 
Sbjct: 624 WNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTA 678

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762
           EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE 
Sbjct: 679 EIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVES 738

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  D  +
Sbjct: 739 LAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWK 798

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +
Sbjct: 799 QKDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMA 853

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +     +  VA  L
Sbjct: 854 GGSDASAIQTLLNSVADNL 872


>gi|305681135|ref|ZP_07403942.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659340|gb|EFM48840.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 889

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/921 (34%), Positives = 488/921 (52%), Gaps = 61/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPID 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              +  D  ++++TVY +D+EA  +W+ + G+ A++I R+   DNFWSM   GPCGP SE
Sbjct: 116 EGGYGFDPEKIWVTVYLDDDEAANIWENVVGIPAERIQRLGMADNFWSMGIPGPCGPSSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+G    G   G + +  RY+EIWNLVFM+ E+       N +    LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ   N Y+ DL + +I  ++++TG  Y  N  + +  RVI DH R++  +I
Sbjct: 235 GVERIACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMII 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+    +E+  F KTL+ G  L +   + + +     + G  AF L+DT+G P+D+  ++
Sbjct: 355 IQRVAITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGADAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F++ + EQR+RA+A S     G T+   +        T+FIGYD L 
Sbjct: 415 AAEAGL-QVDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDEL- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G+ V E  +G  VEV+ D + FYAEA
Sbjct: 473 ----------------------TAQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G        L++ DVQK  + ++VH A VE G      ++   +D   R    
Sbjct: 511 GGQIGDRGTMTLGDSLLRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ IE   N  + 
Sbjct: 571 QAHSATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T     ++A   GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + +
Sbjct: 631 ADWQVNTIETTLDEAKTMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESSI +G RRIEA +G  +  +L  +   +  LAS LK     V  R+ ++ 
Sbjct: 687 IGPVSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLT 746

Query: 765 EEYRKLQL-IHAKRKLQLNVED----LSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + ++ +  I   RK +L  +        H    +   S ++     + +L+++   ++ 
Sbjct: 747 TKLKEAEKTIENLRKAELLAQGSRLVARAHLPNGITVASAVLPDGTTAGDLRTLAADVKN 806

Query: 819 KI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
            +  ++G+++L   + + K   ++  T++ + R  NA  + +     +  G GGG+P MA
Sbjct: 807 HLAGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMA 865

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q  G N +   + +   +  +
Sbjct: 866 QGSGSNPDGLPEGLKAASDHI 886


>gi|237752004|ref|ZP_04582484.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376571|gb|EEO26662.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 963

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1002 (33%), Positives = 515/1002 (51%), Gaps = 149/1002 (14%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQA 60
                IR  +LEFF+  GH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P  + 
Sbjct: 1   MKTKDIRALYLEFFKSKGHQVYESMPLVP-DDASLLFTNAGMVQFKDIFTGKIPTPKQRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    
Sbjct: 60  ATSAQLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKDAIAYAWEFVTEVLGF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  LY+T+++ D+EAF+LW K   + + +I R+   DNFW M +TGPCGPCSEIF DQG
Sbjct: 120 DKSVLYVTIHESDDEAFELWCK--HIDSSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQG 177

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E   G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+A +L+ 
Sbjct: 178 AEFFNGEEDYFGGDGDRFLEIWNLVFMQYERSADGSLKPLPKPSIDTGMGLERVAALLEG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +N+D  +F  LI   E ++   Y   +  + RVI DH R+ +FL+A G+    EGRGY
Sbjct: 238 KRSNFDSSIFMPLIHKVESLSKQTYVYESGASFRVIADHARAVAFLLAQGVNFDKEGRGY 297

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y  L + K  ++E  ++E+ERF 
Sbjct: 298 VLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDTMGGHYGYLKERKNAVQEQCKAEEERFF 357

Query: 360 KTLDRGLVLLDGVLSHLGKDEI-------------------------------------- 381
           +T++ G+ L +  +  L                                           
Sbjct: 358 ETIESGMALFNKEIQTLKAKTNTKAFGLNNDNAEAVEMRNCGFQGGDEGSYLEGNDRASN 417

Query: 382 ------------LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
                        +G+VAFKLYDT+G PLD+ QD+L   GL  +D+ SF + ++EQ+ R+
Sbjct: 418 AESAIHRSNATRFSGEVAFKLYDTYGFPLDLTQDMLRELGL-DVDMQSFEKCMQEQKDRS 476

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +AH  G G    +  + +L  ++G   F+GY+ +                        V 
Sbjct: 477 KAHWKGSGDSAKDGDFNALLSEFGENAFVGYENV-----------------------SVE 513

Query: 490 SIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD----------- 537
           S + A++    + VE   +GQ+  V+ + TPFY E+GG +GD G  +G            
Sbjct: 514 SKILALLDSSFKRVESLGAGQEGWVMLESTPFYPESGGPVGDKGFLLGHSVLSDKSGGAS 573

Query: 538 ----------------------------------------GIRLQITDVQKKAEGIFVHH 557
                                                    I  ++ D QK   G+ +  
Sbjct: 574 YCSLQRTLSVSHSQDLHNPDFSSQSLECQDSHKVDSSSPQNIVAKVLDTQKYF-GLNLSK 632

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +    +L+    +   +D   R +++ +HSATHLLH+AL  ILGSH++Q GS +  + L
Sbjct: 633 VVATS-MLKAGDLVKAQVDSS-RFEIAKHHSATHLLHYALRQILGSHIAQAGSLVETNRL 690

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H K + + EL+ IE  VN  IA++ P V   M   +A A GA AL G KY + VR
Sbjct: 691 RFDFSHPKALNTDELEQIEALVNSKIAESSPQVCETMGITEAKAKGAMALFGEKYGENVR 750

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+S         S  LCGG H+ +T EI   YIV ESS+ +G+RRIEA+ G+ A  +   
Sbjct: 751 VISFG------DSIELCGGIHIQNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYHYGKN 804

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
             E +K     LK    +++  + ++ E+ ++L+   +K       + L    +  V  +
Sbjct: 805 ALESIKQAKEALKAQ--DIIQGIFKLKEQIKELKEKASKS--STGAKTLESKMLNGVKLI 860

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           +  +   D+KE K ++D  + + +   I+L+  S   K ++   V + +  +  A    +
Sbjct: 861 ALKLENTDTKEAKELVDNAKNENEKVAILLITESS-GKVTITAGV-KGVESKLKAGAWVK 918

Query: 858 LSAKVLGGGGGGGRPHMAQSGGP--NGNKADQAIAGVASFLK 897
             A++L GG GGGR   A +GG   + NK  +A+       +
Sbjct: 919 QVAQIL-GGNGGGRDDFATAGGKITDSNKIKEALGLAEKVFQ 959


>gi|322434171|ref|YP_004216383.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321161898|gb|ADW67603.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 941

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/971 (35%), Positives = 520/971 (53%), Gaps = 116/971 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL FF+   H  + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y    
Sbjct: 5   SGSQIREDFLRFFEGKAHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAEKRDYSRAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120
           + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+LLT    F +
Sbjct: 65  SSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKKDAIAYAWELLTSAAWFAI 124

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D+ +LY+T+++       DEEA++ W ++ G+ A++I  +   DNFW+M +TGPCGPCSE
Sbjct: 125 DKEKLYVTIFEGDEKVPRDEEAYQFWLEV-GVPAERIFELGAKDNFWAMGDTGPCGPCSE 183

Query: 175 IFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           I++D G      G      E+ +RY+EIWNLVFMQFE+ +      LPK SIDTGMGLER
Sbjct: 184 IYYDLGLAASESGADVPFGEDDQRYMEIWNLVFMQFERASDGTLTPLPKPSIDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRS 281
           ++ VLQ   +NYD DLF  LI+ + ++T      N  +           + R+I DH R+
Sbjct: 244 VSCVLQGVMSNYDTDLFIPLIKRAAELTLKPTSENPDMGHPVGDEKGAASLRIIADHARA 303

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           ++FLIADG+ PANEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EM  AYPEL+
Sbjct: 304 ATFLIADGVQPANEGRGYVLRKILRRGIRHGRLLGQEQPFMFEMVKAVRDEMKVAYPELV 363

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------------- 378
           +    + + + +E+E+F + +++ +  LD  L  + +                       
Sbjct: 364 EHAERVSKVVLAEEEQFARVIEKAMNELDRTLDAIKQLPSVLDRWNKTPESAPDYKEAEA 423

Query: 379 -----------------------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
                                    +  G  AF  ++T+GLP+D M+D     G+  +D 
Sbjct: 424 AFWVTFELVHRTVNKNEARPKSRHGMFPGRTAFFFFETYGLPIDFMEDAARDAGIE-LDR 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A  E++ RARA   G    T   ++  L      T+F GY  LR           
Sbjct: 483 AEFEKAKIEEQERARASWKGGSQKTASPVYREL----AKTEFEGYSALRVDG-------- 530

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V A+V+ G  V     G++ EVV D T FYA++GGQ+GD G   
Sbjct: 531 --------------ARVIALVKDGVGVHVLSPGEEGEVVLDATSFYADSGGQVGDVGWLY 576

Query: 536 GDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    ++    K  +G+F H  I +   +     +   ++ + R     NH+ THL
Sbjct: 577 AADHTTVLAEVRGANKPVQGVFAHKVIAKV-AIAVGDEVDTVVNGEVRAATMRNHTGTHL 635

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG HV Q GS +  D LRFD +H   +   EL+ IE  VN  + +N PV T 
Sbjct: 636 LHAALREVLGKHVKQAGSLVNRDRLRFDFSHFTGVAEEELREIETIVNAQVLKNTPVETL 695

Query: 653 I-MNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           + +  + A+   GA AL G KY D+VRVV +     G  S+ LCGGTH  +TGEI ++ +
Sbjct: 696 VDVPIDVAVNDYGAMALFGEKYGDKVRVVRI-----GEFSTELCGGTHTLATGEIGVIKL 750

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V ESS+ +G+RR+EAI+G  A        E    ++  +      +  R+    EE +KL
Sbjct: 751 VGESSVASGVRRLEAISGTGALDEFRRGFE----VSRVVPGGAAGLRDRLASDEEEIKKL 806

Query: 771 QLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +      +L+      +       ++  V  ++  +  VD  +++ ++D L+ K+ SG++
Sbjct: 807 RRELDGLRLKAAQAATADAAAGAIEVKGVKVLAKRLDGVDKAQMRELVDQLRGKLGSGVV 866

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L   + E K ++++ VT+DL  +  A  +  L A ++ GG GGGRP +A++GG + ++ 
Sbjct: 867 VLGAATAEGKVALIVGVTKDLTGKVQAGKIVGLLAALV-GGKGGGRPDLAEAGGSDVSQL 925

Query: 886 DQAIAGVASFL 896
           D A+      +
Sbjct: 926 DAALGKAGEVV 936


>gi|306836213|ref|ZP_07469197.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567934|gb|EFM43515.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 894

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/927 (35%), Positives = 491/927 (52%), Gaps = 66/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F  +GHE++PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW+LLTK+  
Sbjct: 60  LATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+     +        LPK +IDTG+
Sbjct: 176 IYYDRGSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFEIVGELPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I  +E++TG  Y       N +  RV+ DH R+   
Sbjct: 235 GIERVACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQENNIRFRVVADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A+LLG   P M   +  +   M  +YPE+   +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAEGPTMERFMNTVMDTMTPSYPEIADNR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  +  L         ++L+GD AF+L+DT+G P+
Sbjct: 355 ERILRVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F 
Sbjct: 415 DLTLEMAQEAGL-DVDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           GY+ L                          + V  +V+ G+ V E   G +VEV+ D +
Sbjct: 474 GYEELVSG-----------------------ANVIGLVKDGQKVNEVHEGDEVEVILDHS 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAE+GGQ+ D G        L++ DVQK  + ++VH A V  G L   MS+  ++D +
Sbjct: 511 PLYAESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEK 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R   +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +++ I   
Sbjct: 571 WRHGATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALI 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  N+ V T   + E+A A GA AL G  Y ++VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAIDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV    +  
Sbjct: 687 VGSSAEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPE 746

Query: 759 RVEEIWEEYRKLQLIHA-KRKLQLNV-EDLSCHKIADVNFMS----HIISEVDSKELKSV 812
           R+ ++ E  +  +      RK QL            +VN +      +       +L++V
Sbjct: 747 RISQLSERLKAAEKEIEVLRKAQLTARASEFIDSATEVNGIKTITLQLPDGTSGGDLRTV 806

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    +I+L  + K K   +     + + +   A D+ +   + +  G GGG
Sbjct: 807 ATDIRNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYVN-GRGGG 865

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           +P MAQ  G     A +    V   L+
Sbjct: 866 KPDMAQGSGTAPEGAQRGFEAVKDLLQ 892


>gi|315636586|ref|ZP_07891820.1| alanine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315479095|gb|EFU69794.1| alanine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 851

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 509/895 (56%), Gaps = 49/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +LEFF+  GHE++ S  L+P +DPTLMFTN+GMV FK+IFTG    P  +  T+ 
Sbjct: 2   DIRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +
Sbjct: 61  QLCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183
           L++TV++ D+EAF +W K   ++  +I+R    DNFWSM +TG CGPCSEIF+DQGE   
Sbjct: 121 LWVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + +   NN
Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D   FK +I+  E+++       NI ++RVI DHLR+ SF+++ GIL  NEGR YVLRR
Sbjct: 239 FDSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G+ +P M  LL  L   MG  Y EL++ K  IEE L  E++RF KT+D
Sbjct: 299 ILRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTID 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L      +I +G  AFKLYDT+G PLD+ +D+L  RGL  +D+  F++ + 
Sbjct: 359 LGMSLFNEELEKTK--DIFSGITAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            Q++ A+A   G G  + E  +  L EK+G+ +F+GY+                      
Sbjct: 416 NQKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYNNTTYK----------------- 458

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V+         V+ D+TPFYA +GGQ GD G    D   + I
Sbjct: 459 -----SKIIALLDEHFKEVKILEKDSTGWVMLDKTPFYATSGGQNGDIGALE-DNKHIAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +   K  G+ +    V    L+   S+   +   NR +++ +HSATHLL  AL  +LG 
Sbjct: 513 VEETTKFHGLNLSKVKVVNSSLKQGESVDAIV--VNRNEVAKHHSATHLLQSALKIVLGD 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
            VSQ GS      LRFD T+ K +T  ++  +ED VN +IA+ +      +  E A   G
Sbjct: 571 TVSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A+ G KY D VRVVS E       S   CGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 631 AIAMFGEKYGDVVRVVSFE-----DVSVEFCGGTHVRNTADIGSFYIVKESGVSAGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A  +      K+  + + +K S  +V+  ++++ E+ + L+      + + + 
Sbjct: 686 EAVCGTAAIKYTKDIISKMNEIQAEVKNS--DVILGIKKLKEQIKDLKKEIETSQSKTS- 742

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              S  +   +N    I+S V++ +LK ++D  +   +   I L+    +K   +++  +
Sbjct: 743 ---SPIEETIINDTKVIVSVVENGDLKKIVDDTKNANEKVAIFLLQAKDDK--VLIVAGS 797

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++      A D  +  A ++GGGGG GRP  AQ+GG + +K  +A      + K+
Sbjct: 798 KNT--NIKAGDWIKNIAPIVGGGGG-GRPDFAQAGGKDTSKIQEAKTKALDYAKE 849


>gi|309810794|ref|ZP_07704600.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308435274|gb|EFP59100.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 904

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/930 (36%), Positives = 507/930 (54%), Gaps = 73/930 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF+  GH ++PS+ LI  +DP L+F N+GMVPFK  F GQ  P +   
Sbjct: 1   METAEIRRRWLQFFEGKGHTVVPSAPLI-YDDPNLLFVNAGMVPFKPYFLGQATPTFTRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFKE AI+ AW+LLT+     
Sbjct: 60  TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKEDAIKFAWELLTRHQSQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TV++ D+EA+ +WK + G+ A +I R   NDN+WSM   GP GPCSEIF
Sbjct: 116 GYGLDADRLWPTVFESDDEAYAIWKDVIGVDAARITRRDANDNYWSMGVPGPGGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+E    + +        LP+ +IDTGMGL
Sbjct: 176 FDRGAEY-GVEGGPAVDEDRYMEIWNLVFMQYELSAVRSKADFDVAGELPRRNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ERMA+VLQ   N Y+ID    ++  + ++TG +Y  N          + V+ RV+ DH+R
Sbjct: 235 ERMASVLQGVDNLYEIDEVYPVLDMAAEMTGKRYGANSGQSAASSHPDDVHLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           SS  LI DG+ P NEGRGYVLRR++RRA+   RLLGY +P + HL+P     M  +YPEL
Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRAMRLLGYADPALPHLVPISMERMSQSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---------ILNGDVAFKLY 391
                 I +   +E+E F +TL  G  +LD  ++   +           +L GD AF L+
Sbjct: 355 KTDFARISQIAYAEEEAFRRTLVAGTTILDTAVAKAKQTTDQQAGGDKPVLTGDQAFSLH 414

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G P+D+  ++   +G++ +D   F + ++EQR RA+A +    +G  +   ++   +
Sbjct: 415 DTYGFPIDLTLEMAAEQGVS-VDEAGFCRLMDEQRQRAKADAKAKKAGHGDVAVWTQLRE 473

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            GAT+F+ Y+ L+                         + V+ +V  G  VE+   GQ  
Sbjct: 474 AGATEFLAYETLQ-----------------------AEASVRGLVANGSAVEQLEPGQSG 510

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +VV D+T FYAE+GGQ+ D G  +    RL++ DVQ+  +G+  H   V  G +R    +
Sbjct: 511 QVVLDRTSFYAESGGQIADEGIIVTPAGRLKVVDVQRPVKGLIAHTVEVLDGPVRVGEGV 570

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D + R      HS TH++H AL  +LG    Q+GS   P  LR D   +  ++   
Sbjct: 571 HTQVDPEWRISACQAHSGTHVVHAALREVLGPSALQSGSYNKPGYLRLDFAWNSALSPET 630

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              IE+  N  + ++LPV  + M   +A   GA AL G  Y+++VRV+ +    GG  S 
Sbjct: 631 RSEIEEVSNLALRRDLPVAAQYMTLPEAKEWGAIALFGETYDEQVRVIEI----GGPWSR 686

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV+ + +I  L +  ESS+ +G+RR+EA  G  A  +L  +   +  L S  K 
Sbjct: 687 ELCGGTHVAHSSQIGALTLTGESSVGSGVRRLEAFVGIDAMRYLAKERALVADLTSMTKA 746

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806
             G +  ++ E+    +  +   ++ K Q               +  V F+ H    +D+
Sbjct: 747 QPGELKDKISEMLTRIKDAERELSRLKQQQMAAAAGSLVEQAKDVFGVRFIGHHDDAIDA 806

Query: 807 KELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +++   L+ K+      ++ + G+SK +   V+         R  A DL +++A VL
Sbjct: 807 DAARAMATDLRAKLGDATPSVVAVGGVSKGRPVIVIATNAPAREWRVKAGDLVKVAAGVL 866

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           GGGGG G+P +AQ GG + +K   AIA V 
Sbjct: 867 GGGGG-GKPDLAQGGGQDASKLGAAIAEVE 895


>gi|153951507|ref|YP_001398463.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|205830016|sp|A7H4N3|SYA_CAMJD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|152938953|gb|ABS43694.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 842

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 502/895 (56%), Gaps = 58/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-AVTTV 64
            IR  +L+FF    HE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIRKAYLDFFASKRHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI  AW+ +T+   L + R
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDR 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LYITV++ D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LYITVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N
Sbjct: 179 NSSEDYMGGDGDRFLEIWNLVFMQYERSANGVLSPLPKPSIDTGMGLERVTAIKEGKFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++
Sbjct: 299 ILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDSIKEQIRFEEERFLSTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ + +  L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + 
Sbjct: 359 NGIEIFNEELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ++RA+A   G G  T    + +L EK+G   F+GY                      +
Sbjct: 416 EQKARAKASWKGSGDKTVSGDFKNLLEKFGENHFVGY----------------------E 453

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V          V+ + TPFYA +GGQ  D+G       + ++
Sbjct: 454 KAECESKILALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSADSGFI----AKREV 507

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK            E   L+        ID + R Q++ +HSATHLLHHAL  ILGS
Sbjct: 508 LDTQKFFNLNLSFIKAGEE--LKVGTIAHARIDAEKREQIARHHSATHLLHHALREILGS 565

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +  + LRFD TH K ++  EL+SIE  VN++I  +   +   M  E+A  SG
Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKSG 625

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+  + A   +  Q E L      LK +  +++  V+++  E           K +L  
Sbjct: 680 EAVVSKAALEFVKNQLEGLSKAKDELKNN--DILSGVKKLKNEI-------LSLKNELKN 730

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +     ++  +   +  VD+ ++K+++D  + K    +I+L+ + K++K ++   V 
Sbjct: 731 SSKTELDSKNIQGVEICVKRVDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGVK 789

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +       A  L + +A++L GG GGGR   A +GG + +K D+A+      ++K
Sbjct: 790 DAP---LKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKIDEALKQSLETIEK 840


>gi|38233936|ref|NP_939703.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|48428504|sp|P61699|SYA_CORDI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|38200197|emb|CAE49878.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 888

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/919 (35%), Positives = 490/919 (53%), Gaps = 61/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTNHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWQLLTGTVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TVY +D+EA ++W K  G+ +++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGLGLDPERLWVTVYLDDDEAAEIWNKKIGVPSERIQRLGMADNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFM+ E+     +        LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GAEGGPIADDNRYMEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ   N Y+ DL + +I  +E++TG  Y  N+   +  RVI DH R+   LI
Sbjct: 235 GIERVACILQGVDNVYETDLLRPVINVAEELTGATYGTNDDDNIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGKTLEKFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F KTL  G  L +     +    +++L+G  AFKL+DT+G P+D+  ++
Sbjct: 355 ILRVAITEEKAFLKTLASGTELFEDKADQVKNSGNKVLDGAAAFKLHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +DI  FN  + EQR+RA+A +     G  +   +        T F GYD L 
Sbjct: 415 AAEAGL-NVDIEGFNSLMAEQRARAKADNRAKKHGHADLSIYREWVDEHPTVFTGYDELT 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  V E  +G++VEV+ + +P YAEA
Sbjct: 474 TD-----------------------SKVLGLLSAGNKVNEIKAGEEVEVILEASPLYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     L++ DVQK  + ++VH A V +G L     +   +D   R    
Sbjct: 511 GGQLGDRGQILMGDTVLKVNDVQKIGKKLWVHKATVAQGGLSVGDVVTAQVDSDWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ THL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ I++  N  + 
Sbjct: 571 QAHTGTHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTESLTPRQLEEIQNITNQAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRV+ V    GG  S  LCGGTHV+ + +
Sbjct: 631 SDWDVNTIETSLEEAKAMGALALFGENYGSEVRVIEV----GGPFSIELCGGTHVTHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESS+ +G+RRIEA TG  +  +L  +   ++++AS +KV    +  R+  + 
Sbjct: 687 IGPVAILGESSVGSGVRRIEAYTGLDSFKYLAKEQALVENIASSMKVKPEELPDRIAALT 746

Query: 765 EEYRKLQLI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQK 818
           ++ +  +        A+   Q         ++  V  ++  +S+V +  +L+S+   +++
Sbjct: 747 QKLKDAEKAIADMRSAQLMAQATGLVAGAIEVNGVKLVAQRVSDVENMGDLRSLAADIKQ 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++     ++ LVG     KA  ++  T+  +   + A   A++  + +  G GGG+P MA
Sbjct: 807 RLDDVPAVVALVGEDASGKAPFVVGATKAAVSAGYKANAYAKILGQYIE-GNGGGKPDMA 865

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q    N +  DQ IA V +
Sbjct: 866 QGSARNSSGFDQGIAAVKA 884


>gi|325280523|ref|YP_004253065.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324312332|gb|ADY32885.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 877

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/921 (36%), Positives = 492/921 (53%), Gaps = 76/921 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G   P ++ 
Sbjct: 1   MKS-AEIRQKFLDFFESKGHTIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNINPKHRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ LT    L
Sbjct: 60  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEDAIAFAWEFLTGVMGL 119

Query: 121 DQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+ RLY TV++  +E        A K+W     LS D+I+     DNFW M + GPCGPC
Sbjct: 120 DKNRLYATVFEGSKEDGLEGDAEARKIWMNY--LSEDRILFGNKKDNFWEMGDMGPCGPC 177

Query: 173 SEIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++    IEIWNLVFMQ+ ++       LP   +DTGM
Sbjct: 178 SEIHIDLRPEEERKLKSGRELVNQDNPLVIEIWNLVFMQYNRKADGSLENLPNHHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+   +Q KT+NYD D+F  +I    +++G+KY    +  V  RVI DHLR+ SF I
Sbjct: 238 GFERLCMAVQGKTSNYDTDVFTPIIDEISRLSGLKYGVSHDADVAMRVIADHLRTISFSI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L   MG  YPEL+  + 
Sbjct: 298 TDGQLPSNVKAGYVIRRILRRAVRYAYTYLDQKEAFMYRLVPVLIEVMGKHYPELVAQQE 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ +R E+  F +TLD+G+ LLD ++     ++   + G+VAF+LYDT+G PLD+ + 
Sbjct: 358 LIEKVIREEENAFLRTLDKGIKLLDRIIEKTKAEDFLTIPGNVAFELYDTYGFPLDLTEL 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL  +GL  ++   F   +E Q+ R+R+ S        E I   ++E      F+GYD  
Sbjct: 418 ILREKGL-VVNRREFKAEMEAQKERSRSASSVDTDDWIELIDDDVQE------FVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   RKV+ +                                  +VF+ TPFY E
Sbjct: 471 EVEVKITRYRKVVTKNKTF----------------------------YHLVFNITPFYGE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD+G  IG+   ++I D +K+  G+ +H A  E+       + +  +D   R   
Sbjct: 503 GGGQVGDSGVLIGEKETIRIIDTKKE-NGLTIHLA--EKMPEDVTQTFIAKVDEHKRVLT 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL +AL  +LG HV Q GS ++ + LRFD +H + +T  EL  +   VN +I
Sbjct: 560 ANNHSATHLLDYALRKVLGKHVEQKGSYVSDEHLRFDFSHFQKVTDEELAEVAAIVNRLI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+     +    A A GA A+ G KY D VRV+          S  LCGGTHV +T
Sbjct: 620 RMNIPLEEHRSVPMAKAQAMGALAIFGEKYGDLVRVIKYG------ESVELCGGTHVPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I+SESS+ AG+RRIEAIT  +A  ++      ++ +    K +  N++  V+ 
Sbjct: 674 GQIGFFKILSESSVSAGVRRIEAITADKAEEYINNSFAIIREMEKMFKSN-KNLMECVKN 732

Query: 763 IWEEYRKLQLIH---AKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQ 817
           + EE   L+      AK  L+L  E L   K    D+N +   +S + + + K +   L+
Sbjct: 733 VLEENEGLKKETEKFAKESLRLLKERLKNEKKVYRDINLIITNLS-IPAAQAKDIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
            + +  +I + G     K  + ++++  + +    NA  + R +A+ + GG GGG+P  A
Sbjct: 792 GEYEK-VIFIAGGVNAGKPHLTVMISNSIAEDYGLNAGQIVREAAQEIKGG-GGGQPFFA 849

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG      ++AI      +
Sbjct: 850 TAGGAYPEGIEKAIEKAEKLV 870


>gi|262202250|ref|YP_003273458.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085597|gb|ACY21565.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 900

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/935 (35%), Positives = 477/935 (51%), Gaps = 73/935 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SL+  +DP L+F N+GMVPFK  F G++ P +   
Sbjct: 1   MQTHDIRKRFLDHFIKAGHTEVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEQTPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG T RH+TFF+M GNFSFG YFK  AI  AW LLT      
Sbjct: 60  TSVQKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWTLLTGSVENG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +   +L+ TVY +D+EA  +W+   G+ A +I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGISPDKLWPTVYLDDDEAEAIWRDEIGVPAQRIQRRGMKDNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ------ERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+              LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGAGGAKDDYEILGPLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHL 279
           ER+A +LQ   N Y+ DL K +I  + +VTG  Y              + V  RVI DH 
Sbjct: 235 ERVACLLQGVDNVYETDLLKPIIDLAAEVTGRAYGAGNHDDRGSAAHEDDVKFRVIADHT 294

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R+S+ LI DG+LP N+GRGYVLRR++RR +  ARLLG  EP M   +      M  +YPE
Sbjct: 295 RTSAMLIGDGVLPGNDGRGYVLRRLLRRVVRSARLLGAEEPTMGAFIGRAIDLMSPSYPE 354

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
           L + +  I      E+  F KTL  G  L     +         ++G  AF L+DT+G P
Sbjct: 355 LAEQRDHIVSVAVGEETSFSKTLAAGSKLFADAAAATKAAHRSTISGSDAFTLHDTYGFP 414

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++    GL  +D   F   + EQ+ RA+A +    +G  +   +      G T+F
Sbjct: 415 IDLTLEMAAEAGLE-VDQAGFTGLMAEQKQRAKADATARKTGHADVAVYREFLDRGPTEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            G+D L                          + V  +V  G  V  A  G ++ V+ D+
Sbjct: 474 TGFDELVS-----------------------EAKVLGLVADGARVPAATPGTELTVILDR 510

Query: 518 TPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           TP YAE+GGQ+ D G    G G+RL++TDVQK  + +++H  +V+ G +     ++  +D
Sbjct: 511 TPLYAESGGQIADVGTITTGSGVRLRVTDVQKLGKSVWLHKVVVDEGEIAEGDEVLAAVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R   +  HS TH++H AL  +LG   +Q GS   P  LRFD     P+T ++ + IE
Sbjct: 571 AGWRHGATQGHSGTHMVHAALREVLGPGATQAGSLNRPGYLRFDFHQGSPLTDSQKRQIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  N PV T      +A + GA AL G  Y D VRVV +    GG  S  LCGG
Sbjct: 631 EISNSAVEANYPVHTFETGLAEAKSMGALALFGENYGDVVRVVEI----GGPFSMELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV+++ +I  + ++ ESS+ +G+RR+EA  G  +   L  +   L  LAS LKV    V
Sbjct: 687 THVAASSQIGPVTLIGESSVGSGVRRVEAYVGMDSFRFLSKERALLAGLASSLKVPSEEV 746

Query: 757 VGRVEEIWEEYRKLQLIHAK----RKLQLNVEDLSCHKIADVNFMS--HIISEVDSKELK 810
            GRVE++    R  +    K             +   +      +    +   +D+  L+
Sbjct: 747 PGRVEQLVTRLRDAEKQLEKVRADAARSAAAGLVETAEPVGSTLLVGGRLPDGLDANGLR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEK----KASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
           ++   L+ ++     +I+L  ++       K    +  T    D    A DL R +A +L
Sbjct: 807 TIATDLRGRVADRAAVIVLFSVTDAGDGTTKVPFAVATTAAARDAGIKAGDLVRETAPLL 866

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GG GGG+P +AQ  G +    + AIA V   + +
Sbjct: 867 -GGRGGGKPDLAQGSGTDATGIETAIARVRELIAR 900


>gi|229815209|ref|ZP_04445545.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM
           13280]
 gi|229809219|gb|EEP44985.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM
           13280]
          Length = 884

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/897 (37%), Positives = 511/897 (56%), Gaps = 46/897 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ +L FF++ G++L  SSSL+P +DP+L+  N+GM  FK  + G++       
Sbjct: 8   MSTAEIRSAYLNFFEERGNKLYASSSLVP-DDPSLLLANAGMNQFKEYYQGKKVMKEIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVR     ND+D +G   RH +FFEMLGNF+FGG  KE+A   A++L+T+ F L 
Sbjct: 67  CSCQKCVRT----NDIDIIGSDGRHASFFEMLGNFAFGGVTKEQACTWAYELITEVFKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ TV+ +D+E   +W+ + G+  D I R+  +DNFW+   TGPCGPCSEI+FD GE
Sbjct: 123 KERLHFTVFTDDDETHDVWRAL-GVPEDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGE 181

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G P  +   + +R++E WNLVF QF++Q       LP  ++DTGMGLERMA ++Q 
Sbjct: 182 EVGCGCPDCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV----NHRVIVDHLRSSSFLIADGILPANE 295
           K++ +D D+ + LI+  E+++G  Y  N       + R+I DH RS  FLI+DG+LP NE
Sbjct: 242 KSSFFDGDVMQSLIKLGEEISGKTYVDNEYTGASRSLRIIADHARSVDFLISDGVLPGNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG  +  +   + A+   MG AYP L++   L++  + +E+
Sbjct: 302 GRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPNLVENAGLVKGIVNAEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL+ G V LD  L  LG+ E L+G  AF L+DT G P+D+  +I  + G   +DI
Sbjct: 362 ERFSTTLNNGRVYLDEQLGALGEGEQLSGKAAFMLHDTFGFPIDLTVEIAESAG-HAVDI 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  + EQ++RARA + G   G+   +W  L ++  AT+F GY+              
Sbjct: 421 DGFDAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFAGYEEESIEG-------- 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V AIV  GE V  A +  +  VV D+TP YAE GGQLGD G   
Sbjct: 473 --------------AHVLAIVVNGERVASAENAAEASVVLDRTPLYAEMGGQLGDHGLID 518

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               +  +++   K  G++VH   +  G L    ++    D   R  L+ NH+ATHLL  
Sbjct: 519 TADAQFFVSNTVSK-GGLYVHEGKLI-GKLSEGDTVFAGYDLNRRGLLARNHTATHLLDA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I    PVVTR+M 
Sbjct: 577 ALKEVLGDHVNQAGSLVSPEALRFDFTHFEAMTSEQIRAVEDLVNEQILAAKPVVTRVMG 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A ASGA AL G KY+D VRVVS+  ED    S  LCGGTH ++T E+ L  IVSESS
Sbjct: 637 IEEAKASGAVALFGEKYSDTVRVVSIGAED-EPFSRELCGGTHAANTAELGLFKIVSESS 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             + +RRIEA+T   A ++L  +    +S AS LK     V  R+  +  E R+      
Sbjct: 696 TGSNVRRIEAVTSTGAIAYLEQRAALAESAASQLKCRIEEVPARISSLQAELRESNQKLK 755

Query: 776 KR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K         ++    +   +     +   ++ +++ +L++V D +++K+      ++  
Sbjct: 756 KALTGGGSDAISSAIENAQDMGGYKLVVAELAGLEASDLRNVWDTIRQKVSGACACVLAT 815

Query: 831 SKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             EK   A +     +     F+A ++ +  A ++  G GGG+P MAQ+GG +    
Sbjct: 816 VTEKGTPALIAAATDDAASAGFHAGNVIKQIAPLV-DGRGGGKPTMAQAGGKDAQGV 871


>gi|157738295|ref|YP_001490979.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|205829978|sp|A8EWI6|SYA_ARCB4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157700149|gb|ABV68309.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 851

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 509/895 (56%), Gaps = 49/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +LEFF+  GHE++ S  L+P +DPTLMFTN+GMV FK+IFTG    P  +  T+ 
Sbjct: 2   DIRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +
Sbjct: 61  QLCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183
           L++TV++ D+EAF +W K   ++  +I+R    DNFWSM +TG CGPCSEIF+DQGE   
Sbjct: 121 LWVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+    +   LPK SIDTGMGLER+  + +   NN
Sbjct: 179 NGEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D   FK +I+  E+++       NI ++RVI DHLR+ SF+++ GIL  NEGR YVLRR
Sbjct: 239 FDSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G+ +P M  LL  L   MG  Y EL++ K  IEE L  E++RF KT+D
Sbjct: 299 ILRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTID 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L      +I +G  AFKLYDT+G PLD+ +D+L  RGL  +D+  F++ + 
Sbjct: 359 LGMSLFNEELEKTK--DIFSGVTAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            Q++ A+A   G G  + E  +  L EK+G+ +F+GY+                      
Sbjct: 416 NQKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYNNTTYK----------------- 458

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S I+  + +  + V+         V+ D+TPFYA +GGQ GD G    D   + I
Sbjct: 459 -----SKIIALLDEHFKEVKILEKDSTGWVMLDKTPFYATSGGQNGDIGALE-DNKHIAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +   K  G+ +    V    L+   S+   +   NR +++ +HSATHLL  AL  +LG 
Sbjct: 513 VEETTKFHGLNLSKVKVVNSSLKQGESVDAIV--VNRNEVAKHHSATHLLQSALKIVLGD 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
            VSQ GS      LRFD T+ K +T  ++  +ED VN +IA+ +      +  E A   G
Sbjct: 571 TVSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A+ G KY D VRVVS E       S   CGGTHV +T +I   YIV ES + AG+RRI
Sbjct: 631 AIAMFGEKYGDVVRVVSFE-----DVSVEFCGGTHVRNTADIGSFYIVKESGVSAGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A  +      K+  + + +K S  +V+  ++++ E+ + L+      + + + 
Sbjct: 686 EAVCGTAAIKYTKDIISKMNEIQAEVKNS--DVILGIKKLKEQIKDLKKEIETSQSKTS- 742

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              S  +   +N    I+S V++ +LK ++D  +   +   I L+    +K   +++  +
Sbjct: 743 ---SPIEETIINDTKVIVSVVENGDLKKIVDDTKNANEKVAIFLLQAKDDK--VLIVAGS 797

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++      A D  +  A ++GGGGG GRP  AQ+GG + +K  +A      + K+
Sbjct: 798 KNT--NIKAGDWIKNIAPIVGGGGG-GRPDFAQAGGKDTSKIQEAKTKALDYAKE 849


>gi|170758241|ref|YP_001787882.1| alanyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|205830034|sp|B1KXB7|SYA_CLOBM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169405230|gb|ACA53641.1| alanine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 879

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/908 (36%), Positives = 517/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI F++G 
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFNRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIKEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E   E   G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNEIEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++   R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEGRRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  +VSE+ 
Sbjct: 635 IEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKVVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    +  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVASIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|291530562|emb|CBK96147.1| alanyl-tRNA synthetase [Eubacterium siraeum 70/3]
          Length = 878

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/909 (36%), Positives = 498/909 (54%), Gaps = 51/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R ++L+FF+  GH  + S+ L+P  D +++  N+GM P K  F G E+P    V
Sbjct: 4   TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+DNVG+T RH T+FEMLGNFSFG YFK  A   AW+ LTK  ++ 
Sbjct: 64  TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL++T+Y+ED+EA  +W    G+  D+II++   DNFW     GPCGPCSEI FD+GE
Sbjct: 120 EDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHGS-GPCGPCSEIHFDRGE 178

Query: 182 CIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                     + E +R IEIWNLVF QF+   K     L   +IDTGMGLER+A V+Q+ 
Sbjct: 179 KYGPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQDV 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            N +++D  +++++    V G+ Y  +    V+ RVI DH+RS++F++ DGI P+NEGRG
Sbjct: 239 DNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGRG 298

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA  + R+L    P +  +   +  E  +AYPEL + +  I++ +++E+E F
Sbjct: 299 YVLRRLLRRAARHGRMLDVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEESF 358

Query: 359 GKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            KT+D+G+ +L   +  L  D+    IL+G+  FKL+DT+G P+D+ ++IL  R + GID
Sbjct: 359 AKTVDKGMQILGEFIKELSADDTHKPILSGENLFKLHDTYGFPVDLTREILQERNI-GID 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + + EQ+++AR++    G G  E    +L      T F+GY  L           
Sbjct: 418 EERFFELMNEQKAKARSNQAFKG-GWDEATANAL--SGLTTTFVGYKSL----------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S + A+++ GE+ +    G +V VV D TPFYAE+GGQ+GD G  
Sbjct: 464 ------------TADSKILAMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDCGTI 511

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 +Q+ D +K   G F+ +  VE G   T+ S+   +D + R   + NH+  HLL 
Sbjct: 512 TAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLLQ 571

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LG HV Q GS + P   RFD +H   +T  EL+ IE  VND I   +PVVT  +
Sbjct: 572 AALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVTEEL 631

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E+A   GA AL G KY D VRVV       G  S+  CGGTH+ +T +  L  I+SE+
Sbjct: 632 PIEEARKKGAMALFGEKYGDIVRVV-----QAGDVSTEFCGGTHLDNTAKAGLFKIISET 686

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLI 773
           S+ +G+RRIEA+TG    S        + ++A  LK  +   V+ + E +  E   +Q  
Sbjct: 687 SVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHTMQAE 746

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             +        Q+        ++  +   S ++S V    L+   D L+    S + +L 
Sbjct: 747 IDRLNGIISMSQMKNVTEGATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFVAVLA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           G+S  K   + I   E +    NA  + +  A + GG GG G+P  A +G  +  K D+A
Sbjct: 807 GVSDGKGNFLCIASPEAVAKGANAGKIVKEIAAIAGGKGG-GKPDTAMAGIADVTKIDEA 865

Query: 889 IAGVASFLK 897
           +  +   +K
Sbjct: 866 LLALTDIVK 874


>gi|301161775|emb|CBW21315.1| putative alanyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 872

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/918 (36%), Positives = 490/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+A  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +++  F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNVEEFDVEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVNEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+     +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAP-DLGVAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  V++     + ++N +  I     + ++ +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLPMPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 852 GGKNPDGLNAAVEKVLEL 869


>gi|195977801|ref|YP_002123045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974506|gb|ACG62032.1| alanyl-tRNA synthetase AlaS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 872

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/915 (36%), Positives = 499/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIFFD+G
Sbjct: 121 PKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L       L+G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKAKGQDRLDGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA ++  GS   +    +L      ++F+           
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T  V+S +  I+   E  E    GQ   +VFDQTPFYAE GGQ+ 
Sbjct: 463 -------------YETETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D      ++ DVQK   G  +H   V    L       L ID++ R  +  NH
Sbjct: 509 DHGVIKNDKGDPVARVIDVQKAPNGQPLHTVEVL-ASLALNTVYTLAIDHKRRYAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  I+G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I + L
Sbjct: 568 TATHLLHAALHKIIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWKAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ EI L
Sbjct: 628 AITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  + E+
Sbjct: 683 FKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSLSEQ 742

Query: 767 YRKLQLI--HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R LQ      K K           K+ + N + +I SEV   D+  L++  D  ++K  
Sbjct: 743 IRDLQKEIAELKEKAAAAQAGDVFKKVQEANDLRYIASEVSVSDAGALRTFADNWKQKDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     E K +VL+  ++D   R +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A V   L
Sbjct: 858 ASKLSELLAAVPEHL 872


>gi|302023989|ref|ZP_07249200.1| alanyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330833035|ref|YP_004401860.1| alanyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329307258|gb|AEB81674.1| alanyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 872

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/919 (34%), Positives = 493/919 (53%), Gaps = 70/919 (7%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIGA-GPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G        G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +                       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN---------------------- 449

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
               +    +  +   +     + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 450 ----ETLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+ D G        I   + DVQK   G  +H   +    +    +  L I+ + R+ +
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVEL-SASISVGQTYTLEIETKRRKGV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I
Sbjct: 564 EKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQI 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T 
Sbjct: 624 WNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTA 678

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762
           EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE 
Sbjct: 679 EIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVES 738

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  D  +
Sbjct: 739 LAQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWK 798

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +
Sbjct: 799 QKDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMA 853

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +     +  VA  L
Sbjct: 854 GGSDSSAIQTLLNSVAENL 872


>gi|225868896|ref|YP_002744844.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|225702172|emb|CAW99880.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 872

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 502/915 (54%), Gaps = 68/915 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T Y +D++++  W  + G+    +I +   +NFW +   GP GP +EIFFD+G
Sbjct: 121 PKEKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAYDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I DG L
Sbjct: 237 LVAVMQGAKTNFETDLFMPIIKEVEKLSGQAYDQDGDNMSFKVIADHIRALSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA+ + R LG  E  +  L+  +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F +T+D G   LD +L+ L +     L+G   FKLYDT+G P+++ +++    G
Sbjct: 357 KREEETFARTIDAGSGHLDQLLAQLKEKGQDRLDGKDIFKLYDTYGFPVELTEELAEDAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
              ID   F  A++EQ+ RARA ++  GS   +    +L      ++F+           
Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQN--ETLAGITEPSEFL----------- 462

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          T  V+S +  I+   E  E    GQ   +VFDQTPFYAE GGQ+ 
Sbjct: 463 -------------YETETVASRLSVIIVDNERSEMVSEGQ-ALLVFDQTPFYAEMGGQVA 508

Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           D G    D   +  ++ DVQK   G  +H   V    L  +    L ID++ R  +  NH
Sbjct: 509 DHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEVL-ASLALDTVYTLAIDHKRRYAVEKNH 567

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  ++G H +Q GS      LRFD TH + +T+ EL+ IE+ VN+ I + L
Sbjct: 568 TATHLLHAALHKVIGKHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWKAL 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + T   + E A A GA AL G KY   VRVV +     G +S  LCGGTH+S++ EI L
Sbjct: 628 AITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEIGL 682

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+ E  I +G RRI A+TGQ+A      Q++ LK +A  LKV Q   +  +V  + E+
Sbjct: 683 FKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSLSEQ 742

Query: 767 YRKLQLI--HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821
            R LQ      K K           K+ + N + +I SEV   D+  L++  D  +++  
Sbjct: 743 IRDLQKEIAELKEKAAAAQAGDVFKKVQEANDLRYIASEVSVSDAGALRTFADNWKQRDY 802

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S +++L     E K +VL+  ++D   R +A +L +  A ++  G GGG+P MA +GG +
Sbjct: 803 SDVLVLAASIGE-KVNVLVA-SKD--KRAHAGNLIKALAPIVS-GRGGGKPDMAMAGGSD 857

Query: 882 GNKADQAIAGVASFL 896
            +K  + +A V   L
Sbjct: 858 ASKLSELLAAVPEHL 872


>gi|295101950|emb|CBK99495.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 886

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/917 (36%), Positives = 503/917 (54%), Gaps = 57/917 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P NDP+L+  NSGM P K  F  QE+P    V
Sbjct: 4   TGLNELRDKYLTFFEGKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFK+  I  AW+ LT  +   
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKKEVIPWAWEFLTSDEWMA 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + RL+I+VY ED+EA+ +W K  G++ D ++R+   DNFW     GPCGPCSEI+FD+
Sbjct: 120 IPKDRLHISVYKEDDEAYDIWTKKVGVAPDHMVRLGKEDNFWEHGS-GPCGPCSEIYFDR 178

Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           G     G P  G   + +RY+EIWNLVF QF+   K     L + +IDTGMGLER+A V+
Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   N +++D  + ++   E + G  Y  +    ++ RVI DH+RS +F+++DGILP+NE
Sbjct: 239 QGVGNLFEVDTVQSVLHHVEHIAGKTYGADPKEDISIRVITDHIRSCTFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA  + R+LG + P ++ L+  +     SAYPEL +    I++ + +E+
Sbjct: 299 GRGYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
             F +T+D G+ +L+ ++  L K  + +L G   FKL DT G PLD+ ++I   +G+  I
Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417

Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           D   F+  + +Q+ RARA  L    SG +E ++ +L  +   T+F+GYD L+        
Sbjct: 418 DEEGFHAEMTKQKERARAERLKKNISGWSEDLFGTLTAE--PTEFVGYDTLKSD------ 469

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQL 528
                            S+V A+  +  + +   + ++    V VV D+TPFYAE GGQ 
Sbjct: 470 -----------------SVVVALSDEETLTDAIATDEQAKEGVLVVLDKTPFYAEMGGQA 512

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G    L++ DV+K  +G +VH   +E GI+     L   +D + R  ++ NH+
Sbjct: 513 ADHGVITGAECVLRVQDVKKTPKGYYVHTCTLESGIVHVGDHLTARVDKEYRMAIARNHT 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG HV Q GS        FD TH   +T  EL  ++  VND I +++ 
Sbjct: 573 ATHLLQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELVRVQKIVNDKIFESMN 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V  + M  E+A   GA AL G KY   VRVV +E       S+  CGGTHV +T +I   
Sbjct: 633 VTVKEMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGF 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSESS+ AGIRRIEA+TG+        Q+  L ++A+ LK +    +  R E +  E 
Sbjct: 688 KIVSESSVAAGIRRIEAVTGRNLLIRANMQEAMLHAVANTLKANNVAALPARAEAVMAEN 747

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + +       K ++    +     +   + DV   S   +      L+ + D ++   ++
Sbjct: 748 KAMSKELEDIKAKVAASKVTSLFDNAETVGDVKIASAYFTGTSGDTLRGMCDTIRDNAKA 807

Query: 823 GIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             + ++    + K ++ + VT+D       A +L +  + + GG GG G+P  A +G  +
Sbjct: 808 AAVAVLVGKSDDKITMAVTVTKDAQAKGLKAGNLVKEISAIAGGKGG-GKPDFAMAGLKD 866

Query: 882 GNKADQAIAGVASFLKK 898
             K D+A+A V   ++K
Sbjct: 867 ETKIDEALAAVKGIVEK 883


>gi|310778164|ref|YP_003966497.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309747487|gb|ADO82149.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 868

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/912 (37%), Positives = 530/912 (58%), Gaps = 60/912 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  F+EFF++  H+   S+SLIP +DPTL+ T +GMVPFK  F GQ++     
Sbjct: 1   MLTGNEIRQRFVEFFKEKEHKHYESASLIP-DDPTLLLTVAGMVPFKPFFLGQKEAPNSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V T QKC+R     NDL+NVG+T RHHTFFEMLGNFSFG YFKE AI  +W+ +T+   L
Sbjct: 60  VVTYQKCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFITEVLGL 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +++I+V+  D+EA K+W +   +  ++I+R+   DN+WS   TG CGPCSEI+ D G
Sbjct: 116 EKEKMWISVFTTDDEAEKIWIEKCNIPKERIVRLGEEDNWWSAGPTGSCGPCSEIYVDMG 175

Query: 181 ECIPGGL---PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
               G     PG  E  +R++EIWNLVF ++ ++       LPK +IDTG GLER+A+V+
Sbjct: 176 IEYGGDENSKPGDPEADDRFLEIWNLVFTEWNKKEDGTLEPLPKKNIDTGAGLERIASVV 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+K NNY+ DL   +I+ + ++T  +Y        + +VI DH+R  SFLI DG+LP+NE
Sbjct: 236 QKKINNYETDLILPIIEEAGRLTSSEYGKTEKTDFSLKVIADHIRGISFLINDGVLPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG +E  +  L+  +   M  AYPE+++    I++ ++ E+
Sbjct: 296 GRGYVLRRVLRRAVRHGRLLGTSENFLYKLVDKVVEIMKGAYPEILENMEHIKKIIKIEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+F  TL +G+ +++  +    +  +  L+G++ FKLYDT+G P ++ ++I   + +  +
Sbjct: 356 EKFSHTLGQGMQMVNDEIEKAKESGENKLSGEITFKLYDTYGFPYELTEEICEEKDVE-V 414

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
            +  F   +EEQ+ RAR+    +     +       +KYG T F GY+ L+         
Sbjct: 415 YLEEFTAKMEEQKKRARSAREVVMEKGQDSFVEEFYDKYGKTVFEGYEKLQN-------- 466

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                              K+IV   E ++E     KV ++F++TP YAE+GGQ  D G 
Sbjct: 467 -------------------KSIVYHVENIDE----NKVMLIFNKTPLYAESGGQASDHGT 503

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQNRRQLSINHSATH 591
              DG++ +I DVQK+ E IF+H  +V+ G+  L+  + + LT+D + RR +  NH+ATH
Sbjct: 504 VTADGLKGKIIDVQKQKE-IFMHTVVVDEGMDLLKKGLEVTLTVDDERRRDIMRNHTATH 562

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LGSHV Q GS +  D LRFD TH + +T  +L+ +E  VN  I +N  +  
Sbjct: 563 LLHKALKDVLGSHVQQAGSLVDADRLRFDFTHYEAVTRDQLEEVEKIVNRQIFKNTSLKV 622

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           + M  ++A  SG+ AL G KY D VRVV+V       +SS LCGG HV  TGEI L  I+
Sbjct: 623 QHMTLDEAKESGSTALFGDKYGDLVRVVNVPG-----YSSELCGGIHVDRTGEIGLFNIL 677

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +E+ + AG RRIEA TG  +   +   +  + S++  LK    ++  ++E+  E +R+  
Sbjct: 678 TETGVAAGTRRIEATTGVASYKTVNQMERLILSVSDALKTDPKHLEEKIEKTIEAFRETN 737

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L   +      +  +I +V  +       ++  L+ ++D  + K+ S II+
Sbjct: 738 KELEALKSKLASYEANSLFDNIEEINNVKVLIKAFEGKEAGSLREIVDKAKDKLGSCIIV 797

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L   +  +KA   + VT+DL+ +  A DL +  AK + GG GGGRP  AQ+GG +G K  
Sbjct: 798 L--GTDNEKAVFAVGVTKDLMSKVKAGDLVKEIAK-IAGGNGGGRPDFAQAGGKDGKKVP 854

Query: 887 QAIAGVASFLKK 898
           +A+      L +
Sbjct: 855 EALDHARKILTE 866


>gi|268317116|ref|YP_003290835.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262334650|gb|ACY48447.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 953

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/982 (35%), Positives = 518/982 (52%), Gaps = 121/982 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR +FL+FF++ GHE++PS+ L+P NDPTL+FTN+GM  FK++F G     Y+  
Sbjct: 5   KSSEQIRQSFLDFFREKGHEIVPSAPLVPQNDPTLLFTNAGMNQFKDVFLGIGTRPYKRA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + LD
Sbjct: 65  ANTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKREAIRWAWELLVERWGLD 124

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY TV++ DE        EA +LWK  + +    I    T DNFW M +TGPCGPCS
Sbjct: 125 PDRLYATVHEGDEALGLEPDVEAAELWKSETSIDPSHIKFCPTKDNFWMMGDTGPCGPCS 184

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G+   +    R IEIWNLVF+Q+          L    +DTGMG
Sbjct: 185 EIHIDLRPDEERRRVPGIELVNAGDPRVIEIWNLVFIQYNALPDGRLEPLKAKHVDTGMG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNI----------VNHRVI 275
           LER+  VLQ KT+NYD DLF  ++Q + +++       Y+   +          V  RV+
Sbjct: 245 LERIVAVLQGKTSNYDTDLFAPILQRAAELSPRDEVRGYDDIRVADERERERIRVALRVV 304

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMG 334
            DH+R+ +F IADG++P N GRGYV+RRI+RRA+ Y    LG+ EP +  L+  L  +MG
Sbjct: 305 ADHIRAIAFAIADGVVPGNTGRGYVIRRILRRAVRYGYQTLGFREPFLYRLVEPLAHKMG 364

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----------------- 377
             +PE+ + +  +E  +++E+E F  TL  GL   + +L +L                  
Sbjct: 365 RVFPEIERHRAYVERVIKAEEESFLATLGTGLAFFERLLPYLKAAAEGRPIEAIRADLLR 424

Query: 378 -----------------------------KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
                                         ++ + G+VAF L+DT+G P+D+ Q +    
Sbjct: 425 DGQALDLLQKAYVDTSDREAIVEAFLKSAAEKNVPGEVAFLLHDTYGFPIDLTQLMAREE 484

Query: 409 GLAGIDIISFNQALEEQRSRARAHS---LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
           GL G+D+  + + +E QR RARA S     + +   E+  +    +   + F+GYD  R 
Sbjct: 485 GL-GVDMARYEELMERQRERARAASTFGAAVLTADEEEAGWKRVSEGEDSVFVGYDTTRV 543

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                   + +                           +   G + E+V DQTPFYAE+G
Sbjct: 544 EDARIRAVRTI---------------------------QTPEGPRHELVLDQTPFYAESG 576

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG        +++ D QK   G  VH+  V+R     +  +   +D   R+++  
Sbjct: 577 GQVGDTGVLRVGDEEIRVLDTQK-LGGHIVHY--VDRLPKELDAPVEAIVDAARRKRIEK 633

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHLLH AL  ILG+HV Q GS + PD LRFD +H + +T   L+ IE  VN++I +
Sbjct: 634 HHTATHLLHAALREILGTHVQQKGSLVAPDRLRFDFSHFERVTPELLRQIEARVNEVIQR 693

Query: 646 NLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           N+P +  R +  E+AIA GA AL G KY DRVRV++ +       S  LCGGTHV++TGE
Sbjct: 694 NVPRIEERDVPYEEAIARGAMALFGEKYGDRVRVITFDPN----FSMELCGGTHVAATGE 749

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + +  I+SE S+ +GIRR+EA+ GQ A   +  Q  +L+   +  K  Q  +   +  + 
Sbjct: 750 LGVFRIISEGSVASGIRRVEALAGQDALDWINRQLTELEQARTQFKSLQRPLDEEIAVLL 809

Query: 765 EEYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE R+L+   A     ++K +L       H++  +  ++  +  +   EL+ +  AL+ +
Sbjct: 810 EEQRRLEKELAALRREQQKARLAKLIEQAHRVNGLRVVTGQLEALSMDELRELAQALRDQ 869

Query: 820 IQ-SGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +   G+ +L     EK K  +   VT+D++ R   A  L    A+++GGGGG GRP +A 
Sbjct: 870 LGREGVAVLGTTDPEKQKVYLAAAVTDDVVARGLEAGRLVGQVARIVGGGGG-GRPTLAT 928

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
           +GG    K  +A+  V   +++
Sbjct: 929 AGGRQPEKLHEALEAVPRLVQQ 950


>gi|313897393|ref|ZP_07830936.1| alanine--tRNA ligase [Clostridium sp. HGF2]
 gi|312957763|gb|EFR39388.1| alanine--tRNA ligase [Clostridium sp. HGF2]
          Length = 875

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/915 (36%), Positives = 500/915 (54%), Gaps = 60/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKQLTGSQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K
Sbjct: 61  NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAISFAWEFLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                + +LY++VY +D +A+++W ++  +    I++  T+DNFW + E GP GP SEIF
Sbjct: 117 WIGFPKEKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIF 173

Query: 177 FDQGECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE       G        E +RYIE+WN+VF QF+ + +   ++   LP+ +IDTGM
Sbjct: 174 YDRGEAYDPEGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKDYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  +I A+E  T  +Y +  + +  RVI DH+R+ SF +A
Sbjct: 234 GLERLVALVQGGETNFDTDLFLPIIHATEAYTDARYADAQHKMAFRVIADHIRTVSFALA 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L +NEGRGYVLRR++RRA+ +A+ L      M  L+P +   M   YP + +    I
Sbjct: 294 DGALFSNEGRGYVLRRVLRRAVRFAKKLNIQGAFMYKLVPVVYDIMKDFYPYMEEKLDYI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +++E+ERF  TL  G  LL  V+    +  +++G  AFKLYDT+G PL++  +I   
Sbjct: 354 ARLVKAEEERFHATLADGERLLLQVMEEKKESRVIDGKTAFKLYDTYGFPLELTVEIAEE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D   F+  +++QR RARA      S  ++ I   L E    + FIGYD+     
Sbjct: 414 SGYT-VDKDGFDAEMQQQRERARAARGDAESMGSQSI--DLMEFTQESSFIGYDV----- 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S+ V A+ Q G  V+      + +VVFD T FYAE+GGQ
Sbjct: 466 ------------------RHTSAKVIALFQDGVKVDAIS--DEGDVVFDTTVFYAESGGQ 505

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G    +G++  +    K      + H I++ G LR   ++ L +D + R  ++ NH
Sbjct: 506 VGDSGTICAEGVQAVVDTTIKAPHKQHLSHVIIKEGELRVGDAVELQVDEKKRDIITSNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  I+GSH+ Q GS ++ + LRFD TH + +   +LK IE  VN  I  + 
Sbjct: 566 SCTHLLQSALKQIVGSHIQQAGSFVSEEYLRFDFTHFEKVNEEQLKEIERLVNRYIGGHY 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V    M  E+A  SGA AL   KY D VRVVS+     G  S   CGG HV++T EI +
Sbjct: 626 AVSKVEMPIEEAKKSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGV 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A +    +D+ L ++AS LK+     V  +V  + EE
Sbjct: 681 CKIISEESIGSGIRRITAKTGYDAYAEFAKEDDTLHAVASDLKLKGISKVEEKVASVLEE 740

Query: 767 YRKLQLIHAKRKL---QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +L+   A  +     L   DL     ++     +   +   D+K +K ++  ++ + +
Sbjct: 741 NVQLKKELAALQASMFALKASDLVNHMQELNGRQVLIERMDGADAKAMKDIVSNIRSQRE 800

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + ++ L  +  +K   V       +       DL R +A ++  G GGGRP MAQSGG +
Sbjct: 801 NCVVFLASVHGDKVTFVAGADKAAVSGGIKCGDLVREAA-LVCDGKGGGRPDMAQSGGKD 859

Query: 882 GNKADQAIAGVASFL 896
            +K ++A+  + + L
Sbjct: 860 ASKVEEALHLIKNML 874


>gi|258653460|ref|YP_003202616.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556685|gb|ACV79627.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 891

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/915 (35%), Positives = 488/915 (53%), Gaps = 61/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F++ GH ++PS+SLI   D T++FT +GM PFK  F GQ  P +   
Sbjct: 1   MQTHEIRRRFLDHFERAGHTVVPSASLISQ-DATVLFTIAGMAPFKPYFLGQSTPPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D+DNVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIDNVGVTTRHNTFFQMAGNFSFGDYFKAGAIEHAWTLLTSSLADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++TVY+ D+EA +LW++I+GL A++I R    DNFWSM   GPCGPCSEI+
Sbjct: 116 GYGLDPDRLWVTVYESDDEAERLWQEIAGLPAERIQRRGMADNFWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQ-FEQQNKQE-------RFILPKMSIDTGM 228
           +D+G    G   G   + +RY+E+WNLVFMQ    ++             LP+ +IDTG+
Sbjct: 176 YDRGPEY-GIEGGPVADEDRYLEVWNLVFMQDMRGESDGSGKGDFPILGPLPQQNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFL 285
           G+ER+A +LQ   N Y+ DL + +I + EQ++G KY G +    V  RVI DH RS   L
Sbjct: 235 GVERLAFLLQGVDNVYETDLLRPIIASMEQLSGKKYGGGDHQADVRFRVIADHSRSGMML 294

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGYVLRR++RRA+  ARLLG TEP+M  L+  +   M  +YPEL     
Sbjct: 295 IGDGVTPGNEGRGYVLRRLLRRAVRSARLLGVTEPVMPTLMSIVRDLMSPSYPELATDYE 354

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
            IE+   +E++ F +T+  G  L D   + L       L G  AF L+DT G P+D+  +
Sbjct: 355 RIEKVAATEEKAFLRTIASGSKLFDVAAADLATQHVTTLPGATAFTLHDTQGFPIDLTLE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+  F + ++EQ+ RARA +     G  +   +      GAT+F GY  L
Sbjct: 415 MAAEAGLT-VDVAGFERLMKEQKDRARADAKARKGGFADLSEYRRLLDQGATEFTGYSEL 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           +                         + ++ +++ G  V  A  G+++E+V D+TP YAE
Sbjct: 474 QT-----------------------EARIRGLLRDGVPVPAAHEGEEIELVLDRTPLYAE 510

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  D G  +G     ++ DVQK    + VH   +  G   T   ++  +D + R   
Sbjct: 511 SGGQDSDAGTIVGAHGAAEVLDVQKVDRKLVVHRVRITDGEFTTGAQVLAKVDPEWRLGA 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS TH++H AL  +LG    Q+GS   P  LR D    + +++A    +E+  N  +
Sbjct: 571 RQAHSGTHVVHAALRQVLGPEALQSGSYNKPGYLRLDFAWDQALSAATRSELEEVANRAV 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q+LPV     + ++A A GA AL G  Y+D VR+V +    GG  S  LCGGTHV  + 
Sbjct: 631 RQDLPVRVLYGSMQEAQAMGAIALFGETYDDTVRIVEI----GGPWSVELCGGTHVEHSS 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I +ESS+ +G+RR+EA  G  A   L+ +   +  LAS LKV    + GR+E +
Sbjct: 687 QIGPVAITAESSVGSGLRRVEAAVGIEAFHRLVAERTLVSQLASTLKVQPAELPGRIETL 746

Query: 764 WEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQ 817
            ++ +  +   A  +     NV         DV  ++ +         + +L+++   ++
Sbjct: 747 LDKLKSAEKELAGLRAAALGNVAGTLAGGAIDVAGVALVAATAPEGTAAGDLRTLASDVR 806

Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++    G++ L   +       + V    +     A +LA+    ++  G GGG+  +A
Sbjct: 807 GRLGDRPGVVALFAPAHASVPFAVAVNQGGIARGLAAGELAKAVLPLIE-GRGGGKKDLA 865

Query: 876 QSGGPNGNKADQAIA 890
           Q  G   ++  +AI 
Sbjct: 866 QGAGTRPDRIPEAID 880


>gi|290890700|ref|ZP_06553770.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429]
 gi|290479675|gb|EFD88329.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429]
          Length = 885

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/919 (35%), Positives = 497/919 (54%), Gaps = 67/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  FL+FFQ  GH++ PS SLIP +DP+L++ NSG+   K  F G   P    +T
Sbjct: 5   NSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  + + +
Sbjct: 65  NAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPEWYGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +L+IT Y  D E  +LW+  +   A   I    +DNFW + E GP GP +E+FFD+G
Sbjct: 121 EPEKLFITYYPRDTETKELWESQADFVAGHTIPQ--DDNFWDIGE-GPSGPDTEVFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
                      E     E ERY+EIWN+VF QF              LP  +IDTGMGLE
Sbjct: 178 PKFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289
           R+ ++ +    N++ DLF  +I+  EQ++G +Y    +  V+ +VI DH+R+ +F I+DG
Sbjct: 238 RVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVIADHIRAVTFAISDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP N GRGYV+RR++RRA+ + R LG  +P +  L+P +   M + YPE+++ +  I  
Sbjct: 298 ALPGNTGRGYVIRRLLRRAVMHGRKLGIEKPFLTQLVPIVGKIMEAYYPEILENEDKIIP 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++SE+ RF KTL  GL LLD ++    KD    ++G  AFKL+DT+G PL++ ++    
Sbjct: 358 VIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATHISGKDAFKLFDTYGFPLELTEEQAAD 417

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            GL  +D  SF++ +++Q++RAR     L + G  ++   SLK     + ++G+      
Sbjct: 418 AGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQDEALMSLK---VPSVYVGWKQSSVD 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + + AI+   + V++A +GQK  ++FD+TPFYAE GG
Sbjct: 474 D----------------------AKIAAIIVDDQQVDDAKAGQKALLIFDKTPFYAEMGG 511

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G       ++  Q+TDVQ       +H A +    L+    + L +D      +S
Sbjct: 512 QVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISD-LKIGQKVNLRLDMHRHVAVS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  ++  ++ Q GS + PD LRFD TH  P+ +  L  IED VN  IA
Sbjct: 571 KNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDLVNQKIA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LPV     + E A   GA A+ G KY  +VRVVS+     G  +    GGTH  +T E
Sbjct: 631 DALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTHAKNTSE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSES I AG RRIEA+TGQ A   L   ++ LK  A FL   +  +V  ++ ++
Sbjct: 686 LGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVPDKIVDL 745

Query: 764 WEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQK 818
               +  + Q+     K      D    K  +    S+I +++D+     L+ ++D  ++
Sbjct: 746 QNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKIVDEWRQ 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  S +I+ +  +   KA ++    +   +   A ++ +  +  + GG GGGRP  AQ+G
Sbjct: 806 RAVSDLII-IATNNNGKALLVAASAK--PNEVKAGNVVKAISPKIQGG-GGGRPDFAQAG 861

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N      A+A V+ +L+
Sbjct: 862 GKNPAGIANALASVSEYLE 880


>gi|225021330|ref|ZP_03710522.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945712|gb|EEG26921.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 905

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/919 (34%), Positives = 486/919 (52%), Gaps = 61/919 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AV 61
              IR  F   F K GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 19  THEIRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNGTA 77

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 78  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPIDEG 133

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  ++++TVY +D+EA  +W+ + G+  ++I R+   DNFWSM   GPCGP SEI+
Sbjct: 134 GYGFDPEKIWVTVYLDDDEAANIWENVVGIPTERIQRLGMADNFWSMGIPGPCGPSSEIY 193

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G + +  RY+EIWNLVFM+ E+       N +    LPK +IDTGMG+
Sbjct: 194 YDRGPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGMGV 252

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  ++++TG  Y  N  + +  RVI DH R++  +I D
Sbjct: 253 ERIACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMIILD 312

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  I+
Sbjct: 313 GVTPGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRERIQ 372

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL+ G  L +   + + +     + G  AF L+DT+G P+D+  ++  
Sbjct: 373 RVAITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGADAFALHDTYGFPIDLTLEMAA 432

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F++ + EQR+RA+A S     G T+   +        T+FIGYD L   
Sbjct: 433 EAGL-QVDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDEL--- 488

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  ++  G+ V E  +G  VEV+ D + FYAEAGG
Sbjct: 489 --------------------TAQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEAGG 528

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G        L++ DVQK  + ++VH A VE G      ++   +D   R      
Sbjct: 529 QIGDRGTMTLGDSLLRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAARQA 588

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T  +L+ IE   N  +  +
Sbjct: 589 HSATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVDAD 648

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T     ++A A GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + +I 
Sbjct: 649 WQVNTIETTLDEAKAMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQIG 704

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + I+ ESSI +G RRIEA +G  +  +L  +   +  LAS LK     V  R+ ++  +
Sbjct: 705 PVSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLTTK 764

Query: 767 YRKLQL--IHAKRKLQLNVEDLSCHKIADVNFM----SHIISEVDSKELKSVMDALQKKI 820
            ++ +    + ++   L   +    +    N +    + +     + +L+++   ++  +
Sbjct: 765 LKEAEKTIENLRKAELLAQGNRLVARAHLPNGIIVASAVLPDGTTAGDLRTLAADVKNHL 824

Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             ++G+++L   + + K   ++  T++ + R  NA  + +     +  G GGG+P MAQ 
Sbjct: 825 AGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMAQG 883

Query: 878 GGPNGNKADQAIAGVASFL 896
            G N +     +   +  +
Sbjct: 884 SGSNPDGLPAGLKAASDHI 902


>gi|260171843|ref|ZP_05758255.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315920155|ref|ZP_07916395.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694030|gb|EFS30865.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 872

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/918 (35%), Positives = 493/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     YQ 
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEYLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL+  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +          ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKASGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL    +  ++I  FN+ +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENEMT-VNIDEFNEEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  +
Sbjct: 560 AANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARV 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY D+VRV+          S   CGGTHV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGDKVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIMSESSVAAGVRRIEAYTGARVEELLDTVQDTLSDLKALFNNAP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  +++     I +++ +  +   + + ++ +K++   L+ 
Sbjct: 733 YLDENAGLKKQVEDFMKEKEAALKERLLKNIQEIHGIKVVKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSIDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+  V   
Sbjct: 852 GGKNTDGLPAAVEKVLEL 869


>gi|182439827|ref|YP_001827546.1| alanyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780491|ref|ZP_08239756.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|205830221|sp|B1W3I1|SYA_STRGG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|178468343|dbj|BAG22863.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660824|gb|EGE45670.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 889

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/923 (36%), Positives = 505/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH  +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTAVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ITVY +D+EA ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y   N   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAENSTDVSLRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +L+  ++       ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILETAVTETKAAGGQVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR +A+A +    +G  +   +  + +  GAT+F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYASLAG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG    D G  +++ DVQK   G+ VH  +V+ G +     +  +ID   RR ++
Sbjct: 511 GQLADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQK 818
            + +  +    K + +  L           DV   + +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGTALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ +  +   +   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N      A+A V   + +
Sbjct: 865 QGGGTNPAAIGDAVAAVERLVTE 887


>gi|113478168|ref|YP_724229.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|122964340|sp|Q10VG8|SYA_TRIEI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110169216|gb|ABG53756.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
          Length = 874

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/905 (37%), Positives = 506/905 (55%), Gaps = 53/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F+ +  H +LPS+SL+P  DPT++ T +GM+PFK IF GQ+   Y   T
Sbjct: 7   TGNEIRKKFLSFYAQREHTILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQPRQYPRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  AI LAW+L TK F L  
Sbjct: 66  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKPEAIALAWELSTKIFALPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+ ED+EAF +W+   G+ A +I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 ERLVVSVFREDDEAFAIWRDQIGIPAHRIQRMDEADNFWASGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDDHIDLEDDTRFIEFYNLVFMQYNRDANGNLTPLENRNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y   +    V+ +VI DH+R+ + LIADG+  +N GRGY
Sbjct: 241 NYETDLIFPIIKTASDIADIDYRKSDDKTKVSLKVIGDHVRAVANLIADGVTASNVGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G +      +     T     YP L + + +I+  L+ E+ RF 
Sbjct: 301 ILRRLIRRVVRHGRLIGISGEFTSKVAETAITLAEDIYPNLRERETVIKAELQREESRFL 360

Query: 360 KTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +TL+RG  LL  +++     K + ++G+ AFKLYDT+G PL++ Q+I    GL  +D+  
Sbjct: 361 ETLERGEKLLAEIMAKPETKKTQHISGEDAFKLYDTYGFPLELTQEIAEENGLT-VDVSM 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F+Q ++  + R+++    +     + +   +      TQF+GY  L              
Sbjct: 420 FDQEMKLAQIRSQSAHETIDLTAQDGVKLDI----DKTQFLGYTDLSSP----------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+V  GE +E   +G +V++V D+TPFYAE+GGQ+ D G   GD
Sbjct: 465 ------------AQVMALVGDGEQLETVQAGAQVQIVLDKTPFYAESGGQIADRGYLSGD 512

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + ++I DVQK+   IFVH   +ERG L+  M++   ID   RR+   NH+ATHLL  AL
Sbjct: 513 SLVVRIEDVQKQ-NNIFVHFGRIERGRLQLGMTVNAQIDGTCRRRAQANHTATHLLQAAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            +++ S +SQ GS ++ D LRFD    + +   E++ +E  VN  IA+        M  E
Sbjct: 572 RSLVDSSISQAGSLVSFDRLRFDFNCPRGLKPEEVEQVEAQVNSWIAEAHSATVAEMPLE 631

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            A A GA A+ G KY D VRVV          S  LCGGTHV++T EI +  I+SE+ I 
Sbjct: 632 VAKAKGAVAMFGEKYADVVRVVDYPG-----VSMELCGGTHVNNTAEIGVFKIISEAGIS 686

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +G+RRIEA+ G     +L  +D  +K L+   K     +  RV  + +E +  Q      
Sbjct: 687 SGVRRIEAVAGLAVLDYLKVRDAVVKELSDRFKAKPEELSERVSNLQQELKDSQKQLEAL 746

Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K +L V        +   + +   +   +  VD++ LK+  + LQ+K+    ++L G + 
Sbjct: 747 KGELAVAKSDQLLGNAETVGEFQILVAEMPGVDAEALKTAAERLQQKLDESAVVL-GSAA 805

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           E K S++   ++ +  +   A       AK+ GGGGG GRP++AQ+GG + +K  +A+  
Sbjct: 806 EGKVSLVAAFSKSVNGKGLQAGKFIGGIAKICGGGGG-GRPNLAQAGGRDPSKLKEALES 864

Query: 892 VASFL 896
               L
Sbjct: 865 AKEQL 869


>gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa]
 gi|313471500|sp|B9HQZ6|SYAP_POPTR RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa]
          Length = 994

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/925 (35%), Positives = 501/925 (54%), Gaps = 69/925 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FLEF+    H++LPS+SL+P +DPT++ T +GM+ FK IF G+        T
Sbjct: 99  SGDAIRRRFLEFYASRSHKVLPSASLVP-DDPTVLLTIAGMLQFKPIFLGKAPRQVPRAT 157

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+L TKEF L  
Sbjct: 158 TAQKCIRT----NDVENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPA 213

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+++VY++D+EAF++W    G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 214 DRLWVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYDFHPE 273

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ + +      L + +IDTG+GLER+A +LQ+  N
Sbjct: 274 -RGYKNTDLGDDSRFIEFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPN 332

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y   +    +N ++I DHLR+  +LI+DG+LP+N GRGY
Sbjct: 333 NYETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGY 392

Query: 300 VLRRIMRRAMCYARLLGYTEP-----LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           V+RR++RRA+   RLLG          +  +   +        P++      I + L+ E
Sbjct: 393 VVRRLIRRAVRTGRLLGVKGGGEDGVFLPAIAEKVIELSPHIDPDVKARGHSILDELQRE 452

Query: 355 DERFGKTLDRGLVLLDGVLSH----LGKDEILN---GDVAFKLYDTHGLPLDIMQDILCA 407
           + RF +TL+RG  LLD +L+       K E L    G   F LYDT G P++I  ++   
Sbjct: 453 ELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAEE 512

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +G+  ID+  F   +E QR +++A    +           L E    T+F+GYD L    
Sbjct: 513 QGVK-IDMDGFEVEMENQRRQSQAAHNVVKLAVENG--GDLAENVHDTEFLGYDTL---- 565

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 ++V++++  G+ V +   G +VEV+ ++TPFYAE+GGQ
Sbjct: 566 -------------------SARAVVESLLLNGKSVIQVSEGSEVEVLLNKTPFYAESGGQ 606

Query: 528 LGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           +GD G              ++I DVQK    +FVH   +  G+L     +   +D + R+
Sbjct: 607 IGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVDAKLRQ 666

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD    +P+  +EL+ IE+ +N 
Sbjct: 667 RAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELEEIENLING 726

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I     + T++M+  DA  +GA A+ G KY ++VRVV V        S  LCGGTHVS+
Sbjct: 727 WIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGTHVSN 781

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV    V  RV+
Sbjct: 782 TSEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEVTTRVD 841

Query: 762 EIWEEYRKLQLIHAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            + EE R ++   +  + +  V        +  S      +  +   + + D+  LKS  
Sbjct: 842 NLLEELRTVRNEVSALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADALKSAA 901

Query: 814 DALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           + L   +Q    I+L     E K S++   T  ++D    A       AK+ GGGGG GR
Sbjct: 902 EYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGVVDIGIQAGKFIGPIAKLCGGGGG-GR 960

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P+ AQ+GG        A+    + L
Sbjct: 961 PNFAQAGGRKPENLTNALEKARTDL 985


>gi|223933644|ref|ZP_03625622.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223897674|gb|EEF64057.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 872

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/919 (34%), Positives = 493/919 (53%), Gaps = 70/919 (7%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIGA-GPSGPDTEIF 172

Query: 177 FDQGECIPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G           L     E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIDIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +                       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN---------------------- 449

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
               +    +  +   +     + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 450 ----ETLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+ D G        I   + DVQK   G  +H   +    +    +  L I+ + R+ +
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVEL-SASISVGQTYTLEIETKRRKGV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I
Sbjct: 564 EKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQI 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T 
Sbjct: 624 WNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTA 678

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762
           EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE 
Sbjct: 679 EIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVES 738

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  D  +
Sbjct: 739 LAQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFADNWK 798

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +K  S +++LV    +K   ++   + D     +A +L ++ A ++  G GGG+P MA +
Sbjct: 799 QKDYSDVLVLVAAIGDKVNVLVASKSSD----VHAGNLIKVLAPIVA-GRGGGKPDMAMA 853

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +     +  VA  L
Sbjct: 854 GGSDSSAIQTLLNSVAENL 872


>gi|255007587|ref|ZP_05279713.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313145280|ref|ZP_07807473.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313134047|gb|EFR51407.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 872

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 491/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M      R +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D EA  +W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASIWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI++  Q+ G +Y  N  N +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKSIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  ++         ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKATGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++ + F+  +++Q+ RAR       +      W  LKE  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNTVEFDAEMQQQKQRARNA-----AAIETGDWIILKE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +   +                             ++V D TPFYAE
Sbjct: 471 EYETSILRYRQVKQKNQTL----------------------------YQIVLDYTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  ++   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVNTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG HV Q GS +TPD LRFD +H + +T  EL+ +E  VN  I
Sbjct: 560 AANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+     +  E+A   GA AL G KY D VRV+          S   CGGTHV++T
Sbjct: 620 RANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFGS------SIEFCGGTHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + L  L +    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAP-DLGVAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E    K Q+    ++ +  V++     + ++N +  I     + ++ +K++   L+ 
Sbjct: 733 YIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKVIKFCLPMPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 852 GGKNPDGLNAAVEKVLEL 869


>gi|29349403|ref|NP_812906.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|41018213|sp|Q8A0M6|SYA_BACTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29341312|gb|AAO79100.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 872

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNAEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    ++ + ++++     I +++ +  I   + + ++ +K++   L+ 
Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + AI  V   
Sbjct: 852 GGKNTDGLNAAIEKVLEL 869


>gi|294778219|ref|ZP_06743645.1| alanine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|294447847|gb|EFG16421.1| alanine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 872

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/919 (36%), Positives = 496/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+   + +H  I ++     ++ ++  +D + R   
Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKE-NNLPIH--ITKKLPEHLDVPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHV +T
Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + +
Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869


>gi|260881197|ref|ZP_05403859.2| alanine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849786|gb|EEX69793.1| alanine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 871

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/911 (36%), Positives = 512/911 (56%), Gaps = 59/911 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + + +R  +L+FF +K GH  LPS SLIP +DPTL+   +GM P K  FTG+ KP    
Sbjct: 1   MSGNELREAYLQFFSEKKGHLRLPSFSLIPQDDPTLLLIGAGMAPLKPFFTGKMKPPRTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK  AI  AW+ LT+  +L
Sbjct: 61  VTTSQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKGEAIPWAWEFLTEVIEL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++TVY +D EA ++WK   G   D I+++   DNFW +   GPCGP SEI+ D G
Sbjct: 117 PKDKLWVTVYPDDTEAIEIWKSQPGFPQDHIVKM--EDNFWEIG-PGPCGPDSEIYIDLG 173

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P      + +RY+EIWNLVF Q+++Q       L   +IDTG GLER+A+V+Q
Sbjct: 174 EERGCGSPTCAVGCDCDRYLEIWNLVFTQYDRQEDGSYKNLAHKNIDTGCGLERLASVVQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ + +V G++Y  +    ++ +VI DH RS + +I DGILP+NEG
Sbjct: 234 NKKTNFETDLLYPIIEYAAKVAGVEYGKDEKTDISLKVIADHARSMAVMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRRI+RRA+ + R+LG     +   + A+      A  + ELI     I++ +  E
Sbjct: 294 RGYVLRRILRRAIRHGRMLGIKGKFLEGAVDAVVEIYRDASDFGELIAKHDYIKKVISIE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL++G+ LLD  +  L  D    L G+V F+LYDT G P ++ ++IL   GL  
Sbjct: 354 EDRFAATLNQGMELLDAEIKSLKADGKDELPGEVGFRLYDTFGFPWELTEEILHENGL-D 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F++A++EQR RAR+                                   +    D
Sbjct: 413 LDKEGFDKAMDEQRERARSARA-----------------------------ENQRVAVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +             + V AI + G++V+E   G++  ++ D+TPFYAE GGQ+GD G
Sbjct: 444 LSGIDVSKLKVDPEAKEAKVVAIWKDGKLVDEITDGEEAGIILDKTPFYAEGGGQVGDEG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             +G+  R++ T+ +K  +G   H + VE G L+   ++ + +D + +   + NH+ATHL
Sbjct: 504 LLLGEFGRIKATNAKKLPDGTVYHVSYVEEGQLKVGETVKIEVDQEKKLASARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G  V+Q GS +TPD LRFD T+ +P+T+ +L  +E  VN +I +   V   
Sbjct: 564 LQAALKKVVGDQVNQAGSSVTPDRLRFDFTNFEPVTAQQLADVEALVNKVILKGQDVEIS 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M+ ++A  +GA AL   KY D VRVV V        S  LC G+HV + G+I +  IV 
Sbjct: 624 HMSLDEAKKAGAMALFSEKYGDVVRVVRVPG-----FSMELCAGSHVKNVGQIGMFKIVG 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770
           E+ I +G+RRIEAITG+ A  +   +   L+  A+ LK ++ +V   VE++  E +++  
Sbjct: 679 ETGIASGVRRIEAITGKAALDYANEKLATLQKAAALLKANEDDVPAAVEKLQAEGKEMAG 738

Query: 771 ---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++   + K            I  V+ ++   +  +   L+ V D    K+ SG+++L
Sbjct: 739 KLAEVAAMQEKADAQQLIAGVKDINGVSVITGKANVENMDSLRDVADLTLDKLGSGVVVL 798

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G + + K ++++  ++D + R  +A  + + +A V+GGGGG GRP MAQ+GG       
Sbjct: 799 -GCANDGKVNLVVKASKDAVKRGIHAGKIIKEAAAVVGGGGG-GRPDMAQAGGKKAEALP 856

Query: 887 QAIAGVASFLK 897
           QA    A+ ++
Sbjct: 857 QAFEKAAAVIE 867


>gi|259649109|dbj|BAI41271.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 912

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/919 (35%), Positives = 493/919 (53%), Gaps = 65/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 35  MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 94

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 95  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 150

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 151 FDPKRLYVTVYPKDKVTKELWRKV-GVADDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 206

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 207 GQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 264

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y  N  + V+ ++I DH R+ +F I DG
Sbjct: 265 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFAIGDG 324

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 325 ALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQK 384

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + SE+ RF +TLD G+ LL+ +++ L +D  + ++G  AFKL+DT+G P+++  +    
Sbjct: 385 VIESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGADAFKLFDTYGFPVEMTNEYAED 444

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D+  F + +  QR RAR       S  ++     L +    ++F G+  L    
Sbjct: 445 EGLK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH 501

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + ++AIV   ++ +E  +GQ  +++FD+TPFYAE GGQ
Sbjct: 502 ----------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQ 538

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        +  ++TDVQ    G  +H   V+   L       L++D   R+++S+
Sbjct: 539 VADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSK-LTKGQPYWLSVDRLRRQKVSL 597

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I  
Sbjct: 598 NHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWD 657

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH ++T  +
Sbjct: 658 ALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNAL 712

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV  +V ++ 
Sbjct: 713 GLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQ 772

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  Q   A  + +L  +           +     ++  +      EL+ + D  + K
Sbjct: 773 ADLKTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLADEWKTK 832

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S I++L   +  K   ++            A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 833 QASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 891

Query: 880 PNGNKADQAIAGVASFLKK 898
                   A+A   + + +
Sbjct: 892 KKPAGIPSALAEAKNVISQ 910


>gi|292670903|ref|ZP_06604329.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647524|gb|EFF65496.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 872

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/912 (35%), Positives = 514/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              + +R  +L+FF +K  H  L S SL+P NDPTL+   +GM P K  FTG+ KP +  
Sbjct: 1   MTGNELREAYLQFFAEKKDHLRLSSYSLVPENDPTLLLIGAGMAPLKPFFTGKMKPPHNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 61  IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVVEL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++++Y ED+EA  +W + + +  D I+     DNFW +   GPCGP SEI+ D G
Sbjct: 117 PKDKLWVSIYPEDDEARAIWLEQTDVLPDHIV--ALEDNFWEIG-PGPCGPDSEIYIDLG 173

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  G   + +R++EIWNLVF Q+++    E  IL   +IDTG GLER+A+V+Q
Sbjct: 174 EECGCGEPTCGIGCDCDRFLEIWNLVFTQYDRTEDGEYNILAHKNIDTGCGLERLASVVQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+   +++ + Y  +    ++ +VI DH RS + +I DGILP+NEG
Sbjct: 234 NKKTNFETDLLYPIIEYISKISDVSYGKDPQKDISLKVIADHARSVAIMIMDGILPSNEG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+      A  + ELI  +  I+  +  E
Sbjct: 294 RGYVLRRTLRRAIRHGRMLGITKPFLDGAVSAVVEIFRDAKDFSELIAKQDYIKRVIHVE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++RF  TL +G+ LL+  ++ L    + +LNG++ FKLYDT+G P ++ ++IL   G+  
Sbjct: 354 EDRFASTLAQGIELLNEEVTRLKSENETVLNGEIGFKLYDTYGFPRELTEEILHENGVT- 412

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   FN  +E+QR+RAR+                                        D
Sbjct: 413 LDDEGFNCEMEKQRTRARSARA-----------------------------ENQAVSVPD 443

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              +     ++  +   + V AI  +G++V+    G+   ++   TPF+AE GGQ+GD G
Sbjct: 444 LSNVDTGSLMEDADATKATVVAIWHEGKLVDSLRDGETAGIILSTTPFHAEGGGQVGDEG 503

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   L +++ ++  +G   H A VE G ++   S+ + +D + +   + NH+ATHL
Sbjct: 504 SLRSELGYLTVSNTKRLPDGTVYHLAYVEEGQIQQGDSVEICLDTKKKLSSARNHTATHL 563

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ++G HV Q GS +TP+ LRFD T+ +P++  +L+ IE+ VN+ I  ++ +   
Sbjct: 564 LHAALRRVVGDHVQQAGSLVTPERLRFDFTNFEPVSEQQLRDIEELVNEEILCSIDLHIS 623

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A A GA AL G KY D VRVV V        S  LCGG+HV++TG+I L  IVS
Sbjct: 624 MMPIDEAKALGAMALFGEKYGDVVRVVRVP-----DFSIELCGGSHVTNTGQIGLFKIVS 678

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG+ A ++       ++ L+  LK    ++V ++++   E + +Q 
Sbjct: 679 ESGVAAGVRRIEAITGRAACAYAAEMARTVQELSQKLKTRSEDLVAQIDKFMTERKSMQE 738

Query: 773 -----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                   + K       +   ++ +   +    +     EL+++ D   +K+ SGI++L
Sbjct: 739 QLRSFAEFRDKADAQKLLMGVQEVGEFRVVVGKANVDSMDELRNIADLTCEKLDSGIVVL 798

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  + K S+++   +  +    +A ++ + +AK +GGGGG GRP MAQ+GG N  +  
Sbjct: 799 GAVI-DDKVSLVVKADKAAVKLGAHAGNIIKAAAKAVGGGGG-GRPDMAQAGGKNPEQLS 856

Query: 887 QAIAGVASFLKK 898
           QA     + +++
Sbjct: 857 QAFDEAVAVIRQ 868


>gi|238926823|ref|ZP_04658583.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885355|gb|EEQ48993.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 890

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/912 (36%), Positives = 514/912 (56%), Gaps = 59/912 (6%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                +R  +L FF +K GH  LPS SL+P NDPTL+   +GM P K  FTG+ KP    
Sbjct: 19  MTGKELREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHR 78

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + T Q+CVR G    D++NVGRT RH TFFEMLGNFSFG YFK+ AI  AW+ LT+  +L
Sbjct: 79  IVTCQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIEL 134

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y  D+EA ++W +  GLS D I+ +   DNFW +   GPCGP SEI+ D G
Sbjct: 135 PKEKLWVTIYPNDDEARQIWLEQPGLSLDHIVPL--EDNFWEIG-PGPCGPDSEIYIDLG 191

Query: 181 ECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G P      + +R++EIWNLVF Q+++    E  +L   +IDTG GLER+A+V+Q
Sbjct: 192 AERGCGSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQ 251

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K  N++ DL   +I+ +  V+  +Y  +    ++ +VI DH RS   +I DGILP+NEG
Sbjct: 252 NKKTNFETDLLYPVIEYAVNVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEG 311

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSE 354
           RGYVLRR +RRA+ + R+LG T+P +   + A+    G    + EL+  +  I+  +R E
Sbjct: 312 RGYVLRRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIKRVIRIE 371

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF  TL +G+ LL+  +  L  +  +IL G+V FKLYDT+G P ++ ++IL   GL  
Sbjct: 372 EERFAATLVQGIDLLNEEIDSLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK- 430

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F Q +E+QR+RAR+                                        D
Sbjct: 431 LDDAGFAQEMEKQRNRARSARA-----------------------------ENQAVAVPD 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
              L      +      + V AI + G +V+    G+   ++   TPF+AE GGQ+GD G
Sbjct: 462 LSGLDTSALTENAEARKAEVVAIWRDGALVDMLHDGESAGIILSTTPFHAEGGGQVGDAG 521

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + D  R+ I + ++  +G   H A VE G ++   ++ + +D  ++   + NH+ATHL
Sbjct: 522 LLLSDVGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHL 581

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  I+G HV Q GS +TP+ LRFD T+ +P+T  +++ IED VN+ +  ++ +   
Sbjct: 582 LQAALQRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEVLSSIDLDIS 641

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M    A   GA AL G KY D VRVV V        S  LCGG+HVS+TG+I L  I+ 
Sbjct: 642 TMPIAVAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIG 696

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AG+RRIEAITG+ A  ++   D  +++L+  LKV  G+++ +V+++ +E + +Q 
Sbjct: 697 ESGVAAGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLLTQVDKLIDEKKNMQE 756

Query: 773 IH---AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                A  + Q + + L     +I   + +   ++    +EL+++ D   +K+ +GI++L
Sbjct: 757 QLRVFADSRDQADAQKLLSDVQEIGKFHVIVGKVNVDSMEELRNIADLTCEKLSAGIVVL 816

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            G++   K ++++   +D +    +A ++ + +AK +GGGGG GRP MAQ+GG       
Sbjct: 817 -GMAANDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGGG-GRPDMAQAGGKMPQNLP 874

Query: 887 QAIAGVASFLKK 898
           QA       +++
Sbjct: 875 QAFDDAVLVIRQ 886


>gi|298384931|ref|ZP_06994490.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298262075|gb|EFI04940.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 872

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/918 (35%), Positives = 495/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNTEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGKHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    ++ + ++++     I +++ +  I   + + ++ +K++   L+ 
Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + AI  V   
Sbjct: 852 GGKNTDGLNAAIEKVLEL 869


>gi|227503536|ref|ZP_03933585.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227075572|gb|EEI13535.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 896

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/925 (35%), Positives = 490/925 (52%), Gaps = 66/925 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F + F  +GHE++PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 5   THEIRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQGLA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW+LLTK+    
Sbjct: 64  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVADG 119

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 120 GFGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSEIY 179

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ E+     +        LPK +IDTG+G+
Sbjct: 180 YDRGSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFKIVGELPKKNIDTGLGI 238

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLI 286
           ER+A +LQ   N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   LI
Sbjct: 239 ERVACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQQDNIRFRVVADHSRTGMMLI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +  
Sbjct: 299 LDGVTPGNEGRGYILRRLLRRIIRSAKLLGAEGATMERFMNTVMDTMTPSYPEIADNRER 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLPLDI 400
           I     +E++ F KTL+ G  L D  +  L         ++L+GD AF+L+DT+G P+D+
Sbjct: 359 ILRVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPIDL 418

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F GY
Sbjct: 419 TLEMAQEAGL-DVDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGY 477

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           + L                          + V  +V+ G+ V E   G +VEV+ D +P 
Sbjct: 478 EELVSG-----------------------ANVIGLVKDGQKVNEVHEGDEVEVILDHSPL 514

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+ D G        L++ DVQK  + ++VH A V  G L   MS+  ++D + R
Sbjct: 515 YAESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEKWR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +++ I    N
Sbjct: 575 HGATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALITN 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N+ V T   + E+A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV 
Sbjct: 635 QAIDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTHVG 690

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV    +  R+
Sbjct: 691 SSAEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPERI 750

Query: 761 EEIWEEYRKLQLIHA-KRKLQLNV-EDLSCHKIADVNFMS----HIISEVDSKELKSVMD 814
            ++ E  +  +      RK QL            +VN +      +       +L++V  
Sbjct: 751 SQLSERLKAAEKEIEGLRKAQLTARASEIIDSATEVNGIKTITLQLPDGTSGGDLRTVAT 810

Query: 815 ALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            ++ +++    +I+L  + K K   +     + + +   A D+ +   + +  G GGG+P
Sbjct: 811 DIRNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYVN-GRGGGKP 869

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
            MAQ  G     A +    V   L+
Sbjct: 870 DMAQGSGTAPEGAQRGFEAVKDLLQ 894


>gi|300814156|ref|ZP_07094439.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511813|gb|EFK39030.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 874

 Score =  823 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/908 (36%), Positives = 510/908 (56%), Gaps = 50/908 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  FL FF+K GH++LPS SLIP ND +L+   +GM P K  FTG+  P  
Sbjct: 5   MKNLGLHEIRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPG 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D+DNVG+T+RH TFFEMLGNFSFG YFK+  I  A++ LT   
Sbjct: 65  KRVTTCQKCIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++++  L++TVY +D+EAF +WK   G++ D+IIR+   DNFW + E GP GPC+EI+ D
Sbjct: 121 EINKDDLWVTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVD 179

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +G            EG+R+IE+WNLVF QF++  K     L   +IDTGMGLER+ATVLQ
Sbjct: 180 RGLKYGSIDERPGGEGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID    +I   E+++G KY  +    V+ RVI DH+R+ +FL+ D + P+NEG
Sbjct: 240 GTNNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG  +  +  L   +    G  Y EL++    I++ ++ E+E
Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKKTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F  T++ G+ +LD  +  L    ++IL+G+ +FKLYDT+G P D+ ++IL  +G    D
Sbjct: 360 KFQMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFEM-D 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  FN  +++Q+ RAR        G       S+  K+   +F+GY+             
Sbjct: 419 MDGFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKF-KNEFVGYEE------------ 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +   + +  I +    V+     +K  ++ D+TPFY E GGQ+GDTG  
Sbjct: 466 -----------DKCQANIIGIFKDYTEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTGYI 514

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GD  + ++ D +K  EG+ +H   V  G +         ID   R  +  NHS THLLH
Sbjct: 515 DGDDFKCRVIDTKKTREGLHLHIVEVLDGEVTKG-PCFAEIDVVRRNNIRRNHSVTHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV+Q GS +  D LRFD TH + ++  E+K +E+ VN  I + L V T + 
Sbjct: 574 KALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEERVNQKIFEALSVTTTVT 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N + A   GA  L   KY D VRV+S+     G +S  LCGGTHV +T EI +  I+SES
Sbjct: 634 NPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIE +TG      L         +A  LK ++ +++ ++     E +KL    
Sbjct: 689 GVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKISSSLNEIKKLNKAI 748

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K   + ++L        +   +N+++H   + D   L+ + D ++ K+ + +++L+ 
Sbjct: 749 DSLKHSSDKDELSNILDEVKEKNGINYLTHKFKDKDVNSLRDIADMVRNKL-NSVVVLLA 807

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  +++DL+ + ++A  + +  +KV GGGGG GR  MA +GG +  K  +A
Sbjct: 808 TENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVCGGGGG-GRADMATAGGRDLGKVSEA 866

Query: 889 IAGVASFL 896
           +  +   +
Sbjct: 867 LKTLEGLI 874


>gi|88607771|ref|YP_505615.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|123494530|sp|Q2GJ36|SYA_ANAPZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88598834|gb|ABD44304.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 876

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/888 (41%), Positives = 525/888 (59%), Gaps = 52/888 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           S+VS IR  FL+FF+K GH   PS+ LI   D +L+FTN+GMVPFK  F        +  
Sbjct: 4   SSVSGIREAFLDFFEKQGHTRYPSAPLIAEGDASLLFTNAGMVPFKQRFI-TGVSDVKTA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW  +TKE  L 
Sbjct: 63  TTSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKETAIELAWRFVTKELGLS 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G +  KIIRI+T+DNFWSM +TGPCGPCSEIF+D G+
Sbjct: 123 KERLWITVYSEDQEAFDIWKKITGYTDHKIIRISTSDNFWSMGDTGPCGPCSEIFYDYGD 182

Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            +PGGLPG+ E +G RY EIWNLVFMQ+ +    E   LP+  IDTGMGLER+A V+Q  
Sbjct: 183 GVPGGLPGTDESDGARYTEIWNLVFMQYNRDESGELHKLPRGCIDTGMGLERIAAVMQGV 242

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NY+ D+F+ +I  S  + G     ++ + HRVI DH+R++SFLIA+G+ P NEGR YV
Sbjct: 243 CDNYETDMFQAIIDRSRSIFG---SHDHPIAHRVIADHVRAASFLIAEGLTPGNEGRNYV 299

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ Y   +   +  +  ++P L  E     MG+AYPE+++A+  I  TL+ E+
Sbjct: 300 LRRIIRRAVRYIYQIVGDKFSLHEVVPVLTREGSAGYMGNAYPEIVKAEQSIVSTLKIEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + F  TL RG  +L+  +  L   E+L+G++AFKLYDT+G PLDI  D+   RGL   D 
Sbjct: 360 DGFADTLRRGTGILEQEIRGLKSGEVLSGEIAFKLYDTYGFPLDITLDVAKERGLK-FDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + +Q+ ++R H  G G   T      +  K+ AT F+GY+  R           
Sbjct: 419 DGFNRCMAKQKEQSRKHWKGSGEAQTASSH--ILNKHKATSFVGYENHR----------- 465

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA- 534
                       V S+VK I   GE V     G++   V D TPFYAE+GGQ GDTG   
Sbjct: 466 ------------VKSMVKEIFCSGEAVTSMGEGEEGIAVLDITPFYAESGGQEGDTGLLK 513

Query: 535 ---IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                 G   ++ D  K +  + +H   V RG L+    +   +D Q R +L  NHSATH
Sbjct: 514 VVTTKCGSVAEVVDTTK-SNNVHLHKIRVIRGTLKVGDVVEAVVDKQRREKLRANHSATH 572

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L   L T++G  + Q GS +  D LRFD +H+ P+T  +L+++E  VN  I  N PV+ 
Sbjct: 573 ILQSVLRTLIGEGIQQKGSLVAADKLRFDFSHALPLTKEQLRTVEMEVNRQIMANQPVII 632

Query: 652 RIMNREDAIASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              + EDA+  GA AL G KYND+  RVVS+        S  LCGGTHV  TG+I    I
Sbjct: 633 DHCSLEDAVQEGAIALFGEKYNDQNVRVVSMGS------SKELCGGTHVRFTGDIGAFRI 686

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE+ I  G+RRIEAITG    S +    E L+ +A  L V    V+ ++++++ E R++
Sbjct: 687 ISETGIAQGVRRIEAITGHEVVSSMNRDSESLQQVAECLSVPVDQVIEKLKKVFVEQREI 746

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
               A            C ++   + +   + E  +  ++ V   +++K+ +  ++ +  
Sbjct: 747 NKKMATICYTHMNSCAKCIEVG--SEIKLYVGEFSNIPVEVVASYVKEKMHTNEVLAIST 804

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  K+ + ++ V E  + R  A D+ +   ++   G GGG   +A++ 
Sbjct: 805 TDGKRTTFIVGVGESAIKRIKATDIVKALQQI--QGKGGGNASIARAS 850


>gi|239986424|ref|ZP_04707088.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
 gi|291443371|ref|ZP_06582761.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291346318|gb|EFE73222.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 889

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/923 (36%), Positives = 506/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH  +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTAVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ITVY +D+EA ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y   N   V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T  ++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +L+  ++       ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR +A+A +    +G  +   +  + +  GAT+F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG    D G  +++ DVQK   G+ VH  +V+ G +     +  +ID   RR ++
Sbjct: 511 GQLADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ +  +   +   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N      A+A V   + +
Sbjct: 865 QGGGTNPAAIGDAVAAVERLVSE 887


>gi|54025614|ref|YP_119856.1| alanyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|59798495|sp|Q5YTJ9|SYA_NOCFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|54017122|dbj|BAD58492.1| putative alanyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 888

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/920 (34%), Positives = 478/920 (51%), Gaps = 58/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F + GH  +PS+SLI   DP L+F N+GMV FK  F GQE P Y   
Sbjct: 1   MQTHEIRRRFLDHFVRAGHTEVPSASLILA-DPNLLFVNAGMVQFKPYFLGQEAPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG T RH+TFF+M GNFSFG YFKE AI LAW+L++K     
Sbjct: 60  TSVQKCVRTG----DIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAITLAWELISKPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  R+++T Y +D EA ++W +++G+  ++I      DN+W M   GP GPCSEI+
Sbjct: 116 GFGFDPERIWVTAYQDDPEAAEIWHRMAGIPKERIQFRDGKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RY+EIWNLVFMQ  +      Q       LPK +IDTGMG+
Sbjct: 176 FDRGPAY-GKDGGPVADEDRYLEIWNLVFMQDVRGELSPKQGHPPIGSLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E++TG +Y   +   V  RVI DH R+++ LI+D
Sbjct: 235 ERVAMLLQGVDNVYETDLLRPIIGKAEELTGRRYGAEHASDVRFRVIADHARTAAMLISD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +  ARLLG  +P+M   +  +   M  +YPEL      I 
Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSARLLGAEKPVMAEFMQVVSDLMSPSYPELATDFDRIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L D   +         + G  AF L+DT+G P+D+  ++  
Sbjct: 355 TVAVGEETAFLKTLTTGSTLFDNTAAAVKAKGGTKIAGADAFTLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   + EQR RA+  +        +   +      GAT+F G+D L   
Sbjct: 415 EAGLS-VDEEGFRSLMAEQRRRAKEDAAARKHAHADLSIYKELVDRGATEFTGFDEL--- 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A  GQ VEV+ D++P YAE+GG
Sbjct: 471 --------------------TSEAHVLALIADGVRVPTATQGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G     G++L++ DVQK A+ ++VH   VE+G +     ++   D   RR  +  
Sbjct: 511 QIADRGSITASGLKLRVNDVQKIAKKLWVHKTTVEQGQITEGDVVLAQADPAWRRGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD      ++  +   IE   ND +  +
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSEQQKADIEAVSNDAVGAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            PV T + +   A   GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +I 
Sbjct: 631 FPVNTFVTDLPKAKQMGALALFGENYGDEVRVVEI----GGPFSMELCGGTHVQHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V  RVE++ E 
Sbjct: 687 PITLLGESSVGSGVRRVEAFVGLDSYKYLAKERALLAGVASSLKVPSEEVPARVEQLVER 746

Query: 767 YRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFM----SHIISEVDSKELKSVMDALQKKI 820
            +  +    + K+   L+       +   V  +    +     V + +L+++   ++ + 
Sbjct: 747 LKVAEKELERTKIAAVLSSAGKFVEEAERVGRVLLVAAAAPEGVAAGDLRTLATDIRGRF 806

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            S   ++++  + + K   ++ V +   +    A +L       +  G GGG+P MAQ  
Sbjct: 807 GSEPAVVVLLGNADGKVPFVVAVNKSAQEIGVKAGELVGSFGPSIA-GRGGGKPEMAQGA 865

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G + +     +A V + + +
Sbjct: 866 GSDPSGIPAGLAAVRARVAE 885


>gi|194333146|ref|YP_002015006.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|194310964|gb|ACF45359.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 885

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/922 (37%), Positives = 499/922 (54%), Gaps = 67/922 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR +FL++F   GH+++ S+ +IP  DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MNSRDIRQSFLDYFSAKGHKIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K+ AI  AW+LLT  + L 
Sbjct: 61  VDTQKCMRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTDVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TVY +DEE+F +W++ + +  D I++    DNFW M ETGPCGPCSEI  D  +
Sbjct: 121 KDRLYATVYKDDEESFLIWQQETDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTD 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G P  +    R IE+WNLVF+Q+ +        LPK  +DTGMG ER+  VLQ K 
Sbjct: 181 DS-SGAPLVNAGDYRVIELWNLVFIQYNRMADGSLDPLPKKHVDTGMGFERVTAVLQGKR 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L +A  +VTG+ Y    +G   +  RVI DH R+ +F I DG +P NEGR
Sbjct: 240 SNYDTDIFYPLFEAITEVTGVTYNASLDGEQDIAMRVIADHARALTFAITDGAMPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ YAR L   EP++  L+  +   MG  +PEL Q +  +++ ++SE+E 
Sbjct: 300 GYVLRRILRRALRYARKLDSREPMIYKLVGVIARTMGDVFPELQQQQETVQKIVKSEEES 359

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ +   +         + + G+ AF+LYDT+G P+D+ + +    GL  ID 
Sbjct: 360 FLSTLDRGMEIFGDITKAVKADNGKEIKGEDAFRLYDTYGFPIDLTRLMAAEVGL-DIDE 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  ++EQ++RAR          +E   +   E    T F+GY+ L            
Sbjct: 419 KGFDVCMQEQKTRARMDRKEKQLAASETGEWLWLETPSPTVFVGYETLES---------- 468

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                    IV   V G ++++V D+TPFYAE+GGQ GD G   
Sbjct: 469 ----------------------DARIVGVKVVGDQLQLVLDRTPFYAESGGQTGDRGVIE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGI-----------LRTEMSLVLTIDYQNRRQLS 584
            +G  +++ D QK  +      A V+                  +++ +++D Q+R    
Sbjct: 507 AEGYSVEVVDTQKDGDMTVHIAATVQDRHTGEQIDPAAIDFSASVAVQVSVDRQSRLATE 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS + PD LRFD +H + +++ EL+ +E  VN+ I 
Sbjct: 567 RNHTATHLLHAALRKVLGKHVQQKGSLVGPDRLRFDFSHFEKVSARELQLVEAEVNERIR 626

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +   +V    +  E+A+  GA A  G KY D VRVV V        S  LCGGTHVS+ G
Sbjct: 627 EAGELVKHADIPYEEALEKGALAFFGDKYADLVRVVEVPG-----VSIELCGGTHVSNVG 681

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762
            I L  IVSESS+ AGIRRIEA+TG+ A   L  + ++L+ +   LK      V  +V+ 
Sbjct: 682 RIGLFKIVSESSVAAGIRRIEALTGKAAEELLWNEYQELQQIRQLLKAHPDEGVAVKVQA 741

Query: 763 IWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE + L       +L     +   +  S  +I      +  + +  + +LKS+   L 
Sbjct: 742 LLEEKKTLGKQVQDMQLSVLLDKALQQLDSSEEINGCRIFTMHVPDAGADDLKSLGQYLH 801

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +I  G  +L   S E K S++       +     NA DL + +A+ + GGGG G+P  A
Sbjct: 802 DRIGCGAGLLASES-EGKVSLVAFAGPQAVRQCGVNAGDLVKKAAQEVQGGGG-GKPGFA 859

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N     +A     + L+
Sbjct: 860 TAGGRNPAGLTKAFETFTAALQ 881


>gi|326803428|ref|YP_004321246.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651546|gb|AEA01729.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 883

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/923 (34%), Positives = 495/923 (53%), Gaps = 65/923 (7%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  ++   IR  +++F++  GH++ PS+SL+P NDPTL++ NSG+   K+   G E P  
Sbjct: 1   MKKLTGEEIRQMWIDFWKGKGHDIYPSASLVPDNDPTLLWMNSGVAALKHYLDGSEVPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QKC+R     ND++NVG T RH TFFEMLGN+S G YFKE  I  AW+ LT  K
Sbjct: 61  PRIANAQKCIRT----NDIENVGVTARHQTFFEMLGNWSVGDYFKEEVIPWAWEFLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD   LY+T Y +D+ +  LW+K++GLS D  +  +  DNFW +   GPCGP +EIF
Sbjct: 117 WLGLDPELLYMTYYPDDDVSHGLWQKVTGLSEDHFV--SLEDNFWDLGA-GPCGPDTEIF 173

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           FD+G+          E     E ERY+EIWN+VF +F          L + ++DTGMGLE
Sbjct: 174 FDRGKAYQDLDDDDPEMFPGGENERYLEIWNIVFSEFNHMPDGSYEKLKQHNVDTGMGLE 233

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           R+++VLQE   N++ DL   LI+  E+++ G KY          +VI DH+R+ SF + D
Sbjct: 234 RISSVLQETPTNFETDLLFPLIKEVEKLSDGKKYGESKETDTAMKVIADHIRAVSFAVGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
             LP+NEGRGY+LRR++RR++ Y R LG     +  L+P +  +M   YPEL + + +I+
Sbjct: 294 NALPSNEGRGYILRRLIRRSVMYGRRLGIQGSFLAKLVPIVADKMEKHYPELKEKEAIIQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E +  E++RF +T+  G  ++   ++ L +  +  L+G  AFKLYDT+G PL++ ++ L 
Sbjct: 354 EVVDREEKRFQETIADGENIIKNKIAELEESGENSLDGQSAFKLYDTYGFPLELTEEYLA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G + +DI  FNQA+EEQ+ RARA     G    +     L E    + F GY+     
Sbjct: 414 ETGFS-VDIDGFNQAMEEQKERARAARKDQGGLAVQSTV--LGEIDVPSHFTGYEE---- 466

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                              +   + + AIV Q EI +EA +  K   + ++TPFY E GG
Sbjct: 467 -------------------DVTETKINAIVYQDEISQEAPANSKAYFIAEKTPFYGERGG 507

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+GD+G        L   I D +       +H+    +  +     + L +D   RR + 
Sbjct: 508 QVGDSGKLYNLDGELLGYIRDTKHAPNDQNLHYIDTVQ-PISVGQEVRLEVDSARRRLIR 566

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH  L  +LG  V+Q GS +    LRFD T+   ++S +L+ +E  VN+ I 
Sbjct: 567 NNHTATHLLHRVLKDVLGEQVNQAGSLLDEHYLRFDFTYFGQVSSDQLEEVERRVNEKIW 626

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +PV T     + A   GA AL G KY   +D +RV+++        S  LCGGTHV +
Sbjct: 627 EQIPVETIFTTVKAAKEHGAIALFGEKYLKLHDEIRVINI-----DDWSMELCGGTHVKN 681

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760
           TG I L  I+SES I +G+RRIEA+T + A  +   +   L  +   LKV +  +V  R+
Sbjct: 682 TGFIGLFKIISESGIGSGVRRIEALTSKAAYEYYEAKLGLLNQVRDDLKVKKAEDVPHRL 741

Query: 761 EEIWEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVD---SKELKSVMDA 815
           +++  E + L+        + N          + + N + +I  E+D     +L+++ D 
Sbjct: 742 QQLEGERKSLESEVESLHAKANQMAASQIFDAVKESNGVRYIAEELDHKTMDDLRAISDE 801

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++   S +++L   + +K   ++ V  + + +   A D+ +  A  + GG GGGRP +A
Sbjct: 802 WKQNNYSDVLVLATANGDKANMLVAVSPDKVKEGLKAGDIIKELAPYINGG-GGGRPELA 860

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N      A+  +   L K
Sbjct: 861 QAGGKNPAGIPDALKALEEVLNK 883


>gi|320449491|ref|YP_004201587.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320149660|gb|ADW21038.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 882

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/919 (38%), Positives = 496/919 (53%), Gaps = 73/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK----PV 57
              + IR  +L FF+  GH  LPS SLIP NDP+L+FT++GM P K  F G +       
Sbjct: 1   MRTAEIREKYLSFFEGKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGAKPIFGGKE 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
           ++ +TT QKC+R G    D++NVGRT RH+TFFEMLGNFSFG YFK+ AI  AW+ LT  
Sbjct: 61  WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTDP 116

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-----ETGPCG 170
           K   LD  RL++TVY++D+EA+ +W+ + G+  +KI R   ++N+W          GP G
Sbjct: 117 KWLGLDPDRLWVTVYEDDDEAYAIWRDLVGVPEEKIGRFGEDENYWPGGAITHGPNGPSG 176

Query: 171 PCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNK----QERFILPKMSI 224
           PCSEIF+D+G     P     ++  G+R++EIWNLVF Q+++Q           LP+ +I
Sbjct: 177 PCSEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNI 236

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
           DTGMGL R+A +LQ+  + Y  D F  +I+     +G  YEG   V+HRVI DH+R+   
Sbjct: 237 DTGMGLYRVAAILQDVEDFYRTDTFYPIIERVALFSGKPYEGTASVSHRVIADHIRAVVA 296

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            +ADG+  +N GRGYV+RR++RRA+ +  LLG  EP +  L P +   +G  YPE+ +  
Sbjct: 297 ALADGVTFSNTGRGYVIRRLLRRALRHGYLLGLQEPFLHRLAPVVAELLGDFYPEMRENL 356

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             +E+ +R E+ERF +TL+ GL  LD +LS L   E+L G  AF+LYDT+G PLD+  +I
Sbjct: 357 PAVEKQIRLEEERFLETLEGGLKRLDTLLSGLRPGEVLPGAEAFRLYDTYGFPLDLTVEI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDL 462
              RG  G+D   F +A+EEQ+ R+RA           + ++   L  + GAT+F+GY  
Sbjct: 417 AAERGF-GVDTEGFKRAMEEQQERSRAAMAFEREIFKKSAQVLEELYAERGATEFLGYGT 475

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                            V A++   + +EEA  G +V+VV D+TPFYA
Sbjct: 476 LE-----------------------AEGTVLALLAGDQSLEEAGPGTEVQVVLDRTPFYA 512

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G       R ++    K   GIF+H A VE G LR    +   +D   R  
Sbjct: 513 EGGGQIGDFGHLEWPSGRARVETTLKTERGIFLHRAKVEEGTLRVGERVRAVVDPARR-D 571

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              +H+ATHLLH AL  +LG HV Q GS + PD LRFD TH +P+T  EL+ IE  VN  
Sbjct: 572 TERHHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLTQEELERIELLVNRW 631

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSS 701
           I  + PV  R +  E+A   GA AL G KY + VRVV VE     GV S  LCGGTHV  
Sbjct: 632 ILADFPVTWRYLPLEEAKREGAMALFGEKYGEVVRVVRVEGSPLPGVESKELCGGTHVRR 691

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TGEI    I  E ++ AG+RR+EA+ G+ A     G   ++++LA  L V + N+  R+E
Sbjct: 692 TGEIGAFLIQKEEAVSAGVRRLEAVAGEWAVRFARGALNRMRALAERLSVGEANLEERLE 751

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQ 817
            + +E +  +      K +L   +L       +   + +    +S VD   L+   D L 
Sbjct: 752 RLLQELKAKEKEVESLKARLVQAELKKEVALSEKGGLRYGVLELSGVDMAALRQAADDLV 811

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK-------VLGGGGGGG 870
            K     ++L         +VL +  +       A  L R  A+         G      
Sbjct: 812 AKGADVALVL-----SGGQAVLKLSPKAQERGLEAGALFRALAERAGGRGGGKG------ 860

Query: 871 RPHMAQSGGPNGNKADQAI 889
              +AQ  G +  KA  A+
Sbjct: 861 --ALAQGAGLSPEKARAAL 877


>gi|254519282|ref|ZP_05131338.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226913031|gb|EEH98232.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 879

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/913 (36%), Positives = 526/913 (57%), Gaps = 52/913 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L+FF+   H  L S  L+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FMGTNELREAYLKFFESKDHLRLESFPLVPKNDKSLLLINAGMAPLKPYFTGLQEPPRKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE  I  AW+ +T+   +
Sbjct: 63  ITTCQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEIIPWAWEFITETLQI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y ED+EA+ +W K + +   +I R+  +DNFW +   GPCGPC+EI +D+G
Sbjct: 119 PKDKLYVTIYLEDDEAYDIWCKKTDVDPKRIFRLGKDDNFWEIGV-GPCGPCTEIHYDRG 177

Query: 181 ECIPGGLPG--SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E     +     + + +R +E WNLVF QF++  +     L   +IDTGMGLER+AT++Q
Sbjct: 178 EGAITNVEDFVKASDEDRVVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERIATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID  K+++Q   +++G+KY  +    ++ R+I DH++S + LI+DG+ P+NEG
Sbjct: 238 GVDNIFEIDTVKNILQKVSELSGVKYGEDKLKDISLRIITDHVKSVTMLISDGVQPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  ++ ++      AYP LI++K  IE  +  E+E
Sbjct: 298 RGYVLRRLLRRAARHGRLLGIKGLFLTDIVESVVENYSGAYPMLIESKEYIERIVSLEEE 357

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L+  +  +    ++ L G+ AFKLYDT+G P+++ ++IL  +G+  +D
Sbjct: 358 RFNETIDSGMNILNDYIEEMEASNEKTLKGEKAFKLYDTYGFPIELTEEILEEKGM-NVD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F + ++EQR RAR+         +++   +  +    T+FIGYD +           
Sbjct: 417 YEAFRKEMDEQRQRARSARGESSYMGSDENPINKIDASINTEFIGYDNIE---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        V+S +  +      V+E   G+K  +V D+TPFYAE GGQ+GD G  
Sbjct: 467 -------------VNSKILVLANDNNFVDELSKGEKGYIVTDKTPFYAEMGGQVGDKGII 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D +K   G  +H+  V  G ++      L ID   R  ++ NH+ATH+LH
Sbjct: 514 KTASGEAYVYDTKKNVGGKTIHYVKVVEGTIKINEEANLKIDVLRRNNIAKNHTATHMLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G HV+Q GS +  + LRFD  H + +T  E++ IE+ VN  I +   V T +M
Sbjct: 574 EALKQVVGKHVNQAGSYVDDERLRFDFAHFQGLTEEEIEKIEELVNKKIMEVFNVDTNLM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A  SGA AL   KY D+VRVVSV     G  S  LCGGTHV+++GEI L  I++E+
Sbjct: 634 TLDEAKESGAMALFDDKYGDKVRVVSV-----GEFSKELCGGTHVNNSGEIGLFKIINEA 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI- 773
            + AGIRRIEA++G  A  ++  +   LK   S LK S+ +V+ ++     E ++ +   
Sbjct: 689 GVAAGIRRIEAVSGLNAIKYMEEKQRLLKEACSALKCSEKDVLKKIASQGAEIKEKEKEI 748

Query: 774 -HAKRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K KL   VED     + +VN +  +   +  +D   L+ + D ++ K+ SG+++L+ 
Sbjct: 749 SELKSKLTCGVEDDILSSVKEVNGIKVVAYGLEGIDGNALRDLGDKMRSKLSSGVVVLLS 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +   K +V+ + T+D+L++  N   + +  A V+GGGGG GRP MAQ+GG N      A
Sbjct: 809 -NVGGKVNVVSMATKDVLEKGINCGKIIKEVAAVVGGGGG-GRPDMAQAGGKNPENIKSA 866

Query: 889 IAG----VASFLK 897
           I      V S +K
Sbjct: 867 IEKTYLVVESLIK 879


>gi|32266358|ref|NP_860390.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|41018183|sp|Q7VHV4|SYA_HELHP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|32262408|gb|AAP77456.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 892

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/931 (37%), Positives = 509/931 (54%), Gaps = 82/931 (8%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTT 63
             IR  +L+FF    H++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+
Sbjct: 4   YDIRKQYLDFFASKSHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPAPPRATS 62

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+     + 
Sbjct: 63  SQLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTQVLGFSKD 122

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
            LY+T+++ D+EA++LW +   +   +I R+   DNFW M ++GPCGPCSEI+ DQGE  
Sbjct: 123 VLYVTIHESDDEAYELWCE--HIEPSRIKRMGDKDNFWQMGDSGPCGPCSEIYVDQGEKY 180

Query: 184 P-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     EG+R++EIWNLVFMQFEQ+    R +LPK SIDTGMGLER+  + + K N
Sbjct: 181 FQSDEDYFGGEGDRFLEIWNLVFMQFEQK-GGVRTLLPKPSIDTGMGLERVIALKEGKIN 239

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIV-------------------NHRVIVDHLRSSS 283
           N+D  LF  L+Q  +++T   Y G++ +                   + RVI DH RS +
Sbjct: 240 NFDTSLFAPLMQCLQKLTNKTYFGDDEIFDRLDLQEAEMIKIKNIQASFRVIADHARSVA 299

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           FL+A G+    EGRGYVLRRI+RRA+ +  LLG  +P +  ++  +C  MG  Y  L + 
Sbjct: 300 FLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLKKPFLWQVVEVVCESMGVHYSYLQER 359

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGL 396
           K  I+E  ++E+ERF +T++ G+ L    L  L        ++ + +G+VAFKLYDT+G 
Sbjct: 360 KRAIKEQCKNEEERFFETIESGMTLFSTELEKLQSAVQTQKQEILFSGEVAFKLYDTYGF 419

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+ QD+L  R +  +D+ +F Q + EQ+SR++A   G G    E  + +L  K+G  +
Sbjct: 420 PLDLTQDMLRERHI-QVDMQAFEQCMNEQKSRSKASWKGSGDALKEGDFNALLSKFGENK 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GY+  + +  +K                        +  Q ++V+      +  V+ D
Sbjct: 479 FVGYESNKETCKIK----------------------ALLDSQFKMVDTLSPSSQGWVMLD 516

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRL---------QITDVQKKAEGIFVHHAIVERGILRT 567
           +TPFY E+GG +GD G        L         Q+ D QK   G+ +         L+ 
Sbjct: 517 KTPFYPESGGPVGDKGALYSTNRILQSAQAQKFAQVLDTQK-FFGLNLSQIEALS-ALKV 574

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +   +D   R +++ +HSATHLLH AL TILGSH++Q GS + P  LRFD +H K +
Sbjct: 575 GQEVFAEVDSI-RFEIAKHHSATHLLHLALRTILGSHIAQAGSLVQPHRLRFDFSHPKAL 633

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T+ E+  IE+ VN+ I Q+   +   M+ + A A GA AL G KY +RVRVVS       
Sbjct: 634 TNEEITHIENLVNEQILQSNAQLCENMDMQQAKAKGAMALFGEKYGERVRVVSFG----- 688

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S  LCGG HV++T EI   YIV ES + +G+RRIEA+ G  A  +      +L     
Sbjct: 689 -DSIELCGGIHVNNTAEIGSFYIVKESGVSSGVRRIEAVCGNAAYHYGKNALLELSRARE 747

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            LK    +V+  +E+I  +  + +    K K   +V+ L   +I  V  +   +  V + 
Sbjct: 748 SLKAQ--DVLQGIEKIKMQLNEAKEKANKAK--QSVKSLDYEEINGVRLIVLKLDSVSAN 803

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           E K ++D  + + +S  I+L+  S   K S++  V         A    +  A+ L GG 
Sbjct: 804 EAKEIIDRSKNENESVAILLLSESNN-KISIVAGVKNAP---LKAGAWVKQVAQEL-GGN 858

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGR   A +GG + +K  QA+        K
Sbjct: 859 GGGRDDFATAGGKDIDKISQALNLAKDIATK 889


>gi|299140238|ref|ZP_07033404.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298597777|gb|EFI53949.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 895

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/935 (37%), Positives = 531/935 (56%), Gaps = 80/935 (8%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  FL FF++ GH  + SSSL+P NDPTL+FTN+GM  FK++F G E   Y
Sbjct: 1   MRNLSGNQIREEFLRFFEEKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAETRDY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
               + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW+LLT   
Sbjct: 61  SRAASSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIKYAWELLTSED 120

Query: 117 EFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            F +D+ +LY+T+++       D EA + W + +G+  D+I  +   DNFW+M +TGPCG
Sbjct: 121 WFGIDKSKLYVTIFEGDAAVPRDNEAEQFWLE-AGVPKDRIYELGAKDNFWAMGDTGPCG 179

Query: 171 PCSEIFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           PCSEI++D G      G      E+ +RY+EIWNLVFMQF++ +      LPK SIDTGM
Sbjct: 180 PCSEIYYDLGLAASETGEDKPFGEDDQRYMEIWNLVFMQFDRSSDGVLTPLPKPSIDTGM 239

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHR 273
           GLER+A VLQ K +NY+ DLF  L+ A+ ++T                   +     + R
Sbjct: 240 GLERVACVLQGKLSNYESDLFTPLLAAAVKLTNFAQSSELREASIEQLAVSDEKGAASLR 299

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           +I DH R+S+FLI+DG+LPANEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EM
Sbjct: 300 IIADHARASTFLISDGVLPANEGRGYVLRKILRRGIRHGRLLGQEKPFMHEMVLAVRDEM 359

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G AYPEL  +   + + + +E+++F +TL+ G       L  + ++ + +G  AF LY+T
Sbjct: 360 GEAYPELKDSAERVAKVVLAEEQQFARTLELG-------LRQMNEETLRSGSQAFHLYET 412

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G+PLD M D     G+   D+  F  A EE++ RARA   G    +   ++  L     
Sbjct: 413 FGMPLDFMVDAARDAGIE-FDMAGFEAAKEEEQQRARASWKGGSQKSASPVYREL----A 467

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            T+F GY  LR                         + V A+V+ G  V E   G+  EV
Sbjct: 468 KTEFEGYTSLRVDG----------------------AKVIALVKDGVGVNELKPGETGEV 505

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V D T FYA++GGQ+GD G       + +  +++  +K  +G+F H   V++  +    +
Sbjct: 506 VLDATSFYADSGGQVGDVGWLYSADHNTVVAEVSGCKKPVQGVFAHAVTVKQS-IAVGDT 564

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ++ + R  +  NH+ THLLH AL  +LG+HV Q GS      LRFD +H   +   
Sbjct: 565 VDTVVNGEVRAAVMRNHTGTHLLHAALRQVLGTHVKQAGSLNDRARLRFDFSHFTGVADE 624

Query: 631 ELKSIEDNVNDIIAQNLPVVTRI-MNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           EL+ +ED VN  +  N  V T + +  + A+   GA AL G KY +RVRVV +     G 
Sbjct: 625 ELQEVEDIVNRQVLANTLVQTLVDVPIDVAVHELGAMALFGEKYGERVRVVKI-----GD 679

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S+ LCGGTH+++TGEI L+ +V E ++ +G+RR+EA+TG  + +      +  K  A F
Sbjct: 680 FSTELCGGTHIAATGEIGLVKLVGEGAVASGVRRVEAVTGTGSLAVFRRDADVAKVAAQF 739

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISE 803
                 ++  RV    +E +KL+    + +++      +       ++  V  ++  +  
Sbjct: 740 GAGDADSLRARVAAQDDEMKKLRRELEQMRMKSASAATADAASSAVEVKGVKVLAQRVDA 799

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           +D  ++++++D L+ K+ SG+++L G + E + S+++ VT+DL+ +  A  +    A  +
Sbjct: 800 LDKSQMRNLVDELRGKLGSGVVVL-GAATEGRVSLIVGVTKDLIGKVQAGKIVGQIAAKV 858

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG GG GRP +A++GG +    D A+A  A  + +
Sbjct: 859 GGKGG-GRPDLAEAGGSDVAALDGALASAAGVVGE 892


>gi|212693638|ref|ZP_03301766.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855]
 gi|237724236|ref|ZP_04554717.1| alanyl-tRNA synthetase [Bacteroides sp. D4]
 gi|265755936|ref|ZP_06090403.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|212663891|gb|EEB24465.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855]
 gi|229437424|gb|EEO47501.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|263234014|gb|EEZ19615.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 872

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 498/919 (54%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K+
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKI 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+   + +H  I ++     ++ ++  +D + R   
Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKE-NNLPIH--ITKKLPEHLDVPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + +
Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869


>gi|199598086|ref|ZP_03211509.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|258507762|ref|YP_003170513.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
 gi|199591012|gb|EDY99095.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001]
 gi|257147689|emb|CAR86662.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus GG]
          Length = 881

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/919 (35%), Positives = 493/919 (53%), Gaps = 65/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 64  TNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKVTKELWRKV-GVADDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 176 GQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y  N  + V+ ++I DH R+ +F I DG
Sbjct: 234 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFAIGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 294 ALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + SE+ RF +TLD G+ LL+ +++ L +D  + ++G  AFKL+DT+G P+++  +    
Sbjct: 354 VIESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGADAFKLFDTYGFPVEMTNEYAED 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D+  F + +  QR RAR       S  ++     L +    ++F G+  L    
Sbjct: 414 EGLK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH 470

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + ++AIV   ++ +E  +GQ  +++FD+TPFYAE GGQ
Sbjct: 471 ----------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQ 507

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        +  ++TDVQ    G  +H   V+   L       L++D   R+++S+
Sbjct: 508 VADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSK-LTKGQPYWLSVDRLRRQKVSL 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I  
Sbjct: 567 NHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWD 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH ++T  +
Sbjct: 627 ALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNAL 681

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV  +V ++ 
Sbjct: 682 GLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSKVTQLQ 741

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            + +  Q   A  + +L  +           +     ++  +      EL+ + D  + K
Sbjct: 742 ADLKTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLADEWKTK 801

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             S I++L   +  K   ++            A DL +  A  +GGGGG GRP MAQ+GG
Sbjct: 802 QASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGG 860

Query: 880 PNGNKADQAIAGVASFLKK 898
                   A+A   + + +
Sbjct: 861 KKPAGIPSALAEAKNVISQ 879


>gi|294811565|ref|ZP_06770208.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326440050|ref|ZP_08214784.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324164|gb|EFG05807.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 889

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/923 (36%), Positives = 511/923 (55%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLINAGMVPFKPYFLGETKPPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +        LP  +IDTG+GL
Sbjct: 176 YDRGPAF-GAEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y  ++   V+ RVI DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+ RF KTL+ G  +L+G ++        +L GD AF L+DT G P+D+  +I  
Sbjct: 355 AVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR++A+A +    +G  +   +  + +  GAT+F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGYAATEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR ++
Sbjct: 511 GQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +  + L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQK 818
            + +  +    K + +               I  V  +S  + +   + +L+ ++  ++ 
Sbjct: 746 AKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRRLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N     +AIA V   + +
Sbjct: 865 QGGGQNPEAVGEAIAAVERLVAE 887


>gi|254882808|ref|ZP_05255518.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|254835601|gb|EET15910.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
          Length = 872

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/919 (36%), Positives = 496/919 (53%), Gaps = 74/919 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I
Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V   TPFYAE
Sbjct: 471 EYETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+   + +H  I ++     ++ ++  +D + R   
Sbjct: 503 SGGQVGDTGVIVSEFETIEIIDTKKE-NNLPIH--ITKKLPEHLDVPMMACVDTEKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHV +T
Sbjct: 620 RENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + +
Sbjct: 674 GKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRK 732

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+
Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A 
Sbjct: 792 GEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFAT 850

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V   
Sbjct: 851 AGGKNPDGLNAAVDKVIEL 869


>gi|34556759|ref|NP_906574.1| alanyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
 gi|44888324|sp|Q7MAD3|SYA_WOLSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34482473|emb|CAE09474.1| ALANYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 855

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/892 (37%), Positives = 504/892 (56%), Gaps = 46/892 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL++F   GH +  S  L+P +DPTL+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 2   DIRKLFLDYFASKGHAVYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPAPTNPRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFKE+AI  AW+ +T+     +  
Sbjct: 61  QLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGDYFKEQAIDHAWEFVTEVLGFSKEV 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183
           L++TV++ D+EAF+LW+K   + A +I R+   DNFW M +TG CGPCSEIF DQGE   
Sbjct: 121 LWVTVHESDDEAFELWQK--HVDASRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGEEKF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+A + + K++N
Sbjct: 179 HGSEDYFGGDGDRFLEIWNLVFMQYERSSDGTLTPLPKPSIDTGMGLERVAALKEGKSSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  +I+  E++TG  Y   +  ++RVI DH+RS  FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFMPMIRKVEELTGKPYHYESGASYRVIADHIRSICFLLAQGVNFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG   P +  +   +C +MG  Y  L + +  I+     E+ERF  T+ 
Sbjct: 299 ILRRAVRHGYLLGLNAPFLHEVAEVVCGQMGDHYGYLKEKREHIKRLTFQEEERFFATIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ +    L       + +G+ AFKLYDT G PLD+ +D+L  +G+  +D+ +F   ++
Sbjct: 359 GGMEVFKKELEKT--QSVFSGEAAFKLYDTFGFPLDLTEDMLREKGIR-VDLAAFEACMK 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR+RA+A   G G    E  +  L E + +  F+GY+                      
Sbjct: 416 EQRARAKASWKGSGDELKEGDFALLLEAFPSNSFVGYEKEAH------------------ 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S ++  + +  + V    +G+   V+ ++TPFYAE+GGQ GD G     G  +  
Sbjct: 458 ----TSKLLAILNRDYKRVSSLGAGESGFVMLEETPFYAESGGQCGDEGELRARGRIVAQ 513

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               KK  G+ +        I     +L   +  + R ++  +HSATHLLH  L   LG 
Sbjct: 514 VQGTKKYFGLNLSRIEALDEICE-GETLEAVVSRE-RLEVQKHHSATHLLHAILRQKLGD 571

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +  D LRFD +H K +T  E+  +E+ VN +I+ ++P  TR M  ++A ASG
Sbjct: 572 HVAQAGSLVEKDRLRFDFSHPKALTHEEVGMVEEEVNRLISLSIPSRTREMRVDEAKASG 631

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY D VRVV     D G  S  LCGGTHV ++  I   YI  ES + AG+RRI
Sbjct: 632 AMALFGEKYGDLVRVV-----DFGEASVELCGGTHVENSAHIGSFYITKESGVSAGVRRI 686

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A  +     +++      LK  +  +   +E++ E+ R+L+   +      + 
Sbjct: 687 EAVCGMAAYHYGKEALQEIAEAKEILKAKELKLG--IEKLKEQVRELKSEMSALSSSKSG 744

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                  + +      I+  +++ ++K+ +D ++ + +   ++L+ + KE+K  +   V 
Sbjct: 745 AISEGVMMGETRV---IVETLEAGDIKNSIDEIKNRYEKVAVLLLQV-KEEKVMLAAGVK 800

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +  DR  A    +  A +LGGGGG GR   AQ+GG + +KAD+A+    ++
Sbjct: 801 GE--DRIKAGAWIKEIAPILGGGGG-GRDDFAQAGGKDASKADEALQSAKNY 849


>gi|168182642|ref|ZP_02617306.1| alanine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796002|ref|YP_002863554.1| alanyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182674085|gb|EDT86046.1| alanine--tRNA ligase [Clostridium botulinum Bf]
 gi|229262453|gb|ACQ53486.1| alanine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 879

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/908 (36%), Positives = 516/908 (56%), Gaps = 48/908 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FT  + P  + V
Sbjct: 4   MGLNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTRLQVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR G    D++NVG+T+RH TFFEM+GNFSFG YFKE  I  AW+  T+   L 
Sbjct: 64  TTCQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180
           + +LY+T+Y++D+EA  +W   + +   +I R+   DNFW     GPCGPCSEI FD+G 
Sbjct: 120 KNKLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHGL-GPCGPCSEIHFDRGA 178

Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            E         + + ++ +E WNLVF QF++  +     L   +IDTGMGLERMAT++Q 
Sbjct: 179 GEIKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQN 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               +++D  K ++    +++G  Y+ +    ++ R+I DH+RS +F+I+DGILP+NEGR
Sbjct: 239 VDTIFEVDTIKAILDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + + LG     + +L   +       YPEL + +  I++ ++ E+ER
Sbjct: 299 GYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKRGYIKKVIKLEEER 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F +T+D G+ +L+  +  +  +  ++L+GD AFKLYDT+G P+++ ++IL   G++ ID 
Sbjct: 359 FDETIDAGMQILNDYIEEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-IDK 417

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ ++EQR RAR+          E    +  +    T F GYD L            
Sbjct: 418 EGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNINTDFEGYDKLE----------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V S V  I++  E       G +  +V   TPFYAE GGQ+GDTG   
Sbjct: 467 ------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIGDTGIIY 514

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K   G  +H   +  G +  E  ++L ++ + R  +  NH+ATH+LH 
Sbjct: 515 NDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTATHILHA 574

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV Q+GS +  + LRFD +H + ++  ELK +E  VN  I +   V T++MN
Sbjct: 575 ALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAVNTKVMN 634

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E+A   GA AL   KY D VRVVSV     G  S  LCGGTHVS++G+I +  IVSE+ 
Sbjct: 635 IEEAKEQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFKIVSEAG 689

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLI 773
           + AGIRRIEA+T  +A  ++  ++  LK  A  LK ++  ++ ++    +  + ++ ++ 
Sbjct: 690 VAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKEKEKEIE 749

Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             K KL    ED    S  +I  V   S  + ++D   L+ + D ++  +QSG+++L G 
Sbjct: 750 ALKLKLASGAEDEILNSIKEIKGVKVASAAVKDIDGNALRDLGDKVRDNMQSGVVVL-GS 808

Query: 831 SKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           + + K   + + T+D +    +   + +  A + GGGGG GRP MAQ+GG + NK + AI
Sbjct: 809 NYKGKVLFVAMATKDTVAKGVHCGKIIKEVATIAGGGGG-GRPDMAQAGGKDPNKLEDAI 867

Query: 890 AGVASFLK 897
             V + ++
Sbjct: 868 KTVETVVE 875


>gi|282896478|ref|ZP_06304498.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9]
 gi|281198584|gb|EFA73465.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9]
          Length = 878

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/905 (36%), Positives = 516/905 (57%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ +  H+ LPS+SL+P  DPT++ T +GM+PFK IF GQ    ++  T
Sbjct: 7   SGNHIRQLFLDFYTQRQHQPLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTAEFKRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F L  
Sbjct: 66  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGLPP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V+++D+EAF +W++  G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 122 ERLVVSVFEDDDEAFNIWQQQIGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDDHIDLEDDTRFIEFYNLVFMQYNRDISGNLTPLQNKNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y   + N  V+ +VI DH+R+   +IAD I  +N GRGY
Sbjct: 241 NYETDLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADEIRASNVGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G     +  +     +   S YP L Q + +I+  L+ E+  F 
Sbjct: 301 ILRRLIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQRETVIKAELQREEGNFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  ++  + +    +++G+ AF LYDT+G PL++ Q+I   + L+ +D+  
Sbjct: 361 KTLDRGEKLLGEIIQEVKQQGLTVISGESAFTLYDTYGFPLELTQEIAQEQSLS-VDVEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  + +Q  RA+A    +   T +     L E   +T+FIGY  L              
Sbjct: 420 FNTEMHKQIERAKAAHETIDL-TVQGSLDKLAEHIHSTEFIGYRQLAT------------ 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ +  ++ +G     A  G  V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 467 -----------TAKIAVLLVEGIAQATATGGTNVQIVLDKTPFYAESGGQIGDQGYISGD 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ ++I DV+K+++  F+H   +ERG ++   S+   +D  NRR+   NH+ATHLL  AL
Sbjct: 516 GLLIRIEDVKKESD-FFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS ++ D LRFD   S+ +T  E++ +ED VN  I+Q  P    I+   
Sbjct: 575 KKIVDEGISQAGSLVSFDRLRFDFNCSRSLTEDEVQQVEDLVNAWISQAHPAQVEILPLP 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D VRV+          S  LCGGTHV++TGEI +  I+S+  + 
Sbjct: 635 EAKARGAVAMFGEKYGDHVRVIDFPG-----VSMELCGGTHVNNTGEIGVFKIISQVGVS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA++G     +L  +D+ +K L++  KV    +  R+  +  E R  + +    
Sbjct: 690 AGIRRIEAVSGAAVLDYLNIRDQVVKDLSNRFKVKPEEIPDRITILQTELRHNEKVIQNL 749

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + +   +   ++++D + LK   + L +KI +G ++L  I +
Sbjct: 750 KSQLAIVKSDSLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIVNGAVVLASIPE 809

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   +  + ++   A       AK+ GGGGG G+P++AQ+GG + +K  QA+  
Sbjct: 810 PGKVSIVAAFSSHVNEKGLQAGKFVGNIAKLCGGGGG-GKPNLAQAGGRDASKLPQALES 868

Query: 892 VASFL 896
               L
Sbjct: 869 AKDNL 873


>gi|41407175|ref|NP_960011.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|118466707|ref|YP_882613.1| alanyl-tRNA synthetase [Mycobacterium avium 104]
 gi|48428510|sp|P61705|SYA_MYCPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830149|sp|A0QI75|SYA_MYCA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41395526|gb|AAS03394.1| AlaS [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167994|gb|ABK68891.1| alanyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 900

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/929 (35%), Positives = 486/929 (52%), Gaps = 70/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+GE    GG P ++E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGEEFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ   N Y+ DL + +I A        Y+    ++ V +R+I DH R+++ LI
Sbjct: 234 VERVAFVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  ARLL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V S       + ++G  AF L+DT+G P+++  ++
Sbjct: 354 IARIAVAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D + F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 ASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQTPF 520
                                    + +  I   G+ V     G     +VE+V D+TP 
Sbjct: 472 ----------------------SSEARILGIFVDGKRVPVVTHGGDGADRVELVLDRTPL 509

Query: 521 YAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D
Sbjct: 510 YAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVD 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            Q RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE
Sbjct: 570 PQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  +  V T     E A A GA AL G  Y ++VRVV +    GG  S  LCGG
Sbjct: 630 EVTNQAVQADFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGG 685

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 686 THVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 745

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
             RV  + E  R  +    + +L               +I +V  ++  +S  + + +L+
Sbjct: 746 PARVANLVERLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLR 805

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVLGGGG 867
           S++  ++ K+ S   ++  I++ +  SV   V  +         A DL +  A  +  G 
Sbjct: 806 SLVGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDLVKQLAAPV-DGR 864

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG+  +AQ  G +    D A+  V S +
Sbjct: 865 GGGKADLAQGSGKDPAGIDAALDAVRSEI 893


>gi|261366901|ref|ZP_05979784.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282571016|gb|EFB76551.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 886

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/916 (36%), Positives = 499/916 (54%), Gaps = 58/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  +L FF+  GH  L S  L+P +DP+L+  NSGM P K  F GQE+P    V
Sbjct: 4   TGLNELREKYLHFFETKGHLRLGSFPLVPKDDPSLLLINSGMAPMKKWFLGQEEPPRHRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++ VG T RH TFFEMLGNFSF  YFKE  I  AW+ LTKE ++ 
Sbjct: 64  TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTKELEIP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LYI+VY +D+EA+ +W K  G+  D ++R    DNFW     GPCGPCSEI++D+G 
Sbjct: 120 ADKLYISVYLDDDEAYDIWTKKVGIPEDHMVRFGKEDNFWEHGS-GPCGPCSEIYYDRGP 178

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVF QF+   K     LP+ +IDTGMGLER+A V+Q+
Sbjct: 179 EHGCGKPTCKVGCDCDRYMEIWNLVFSQFDSDGKGHYERLPRPNIDTGMGLERLACVMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D    ++   E+++G  Y     + ++ RVI DH+RS+ F+++DGILP+NEGR
Sbjct: 239 VGNLFEVDTVASVLHHVERISGKHYGDSEKDDISIRVITDHIRSTVFMVSDGILPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA  + R+LG   P +  L+  +     + YPEL + +  I++ + +E+ER
Sbjct: 299 GYVLRRLLRRAARHGRMLGIDRPFLTELVDTVIESSEAGYPELREHESYIKKVVGTEEER 358

Query: 358 FGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           FG+T+D GL +L+ ++       + +L+G   FKL DT G PLD+ ++I    G   +D 
Sbjct: 359 FGRTIDAGLNILNNMIDERKAAGETVLSGSEVFKLNDTFGFPLDLTKEIAAEAGFT-VDE 417

Query: 416 ISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
            +F+  + +QR RARA  L    SG +  ++  L  +   TQF GY+ L           
Sbjct: 418 EAFHAEMTKQRERARAERLAKDISGWSADLFGELAAE--PTQFDGYETL----------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE------VVFDQTPFYAEAGGQL 528
                         ++ V+A+    E+ +   + +  E      VV D+TPFYAE GGQ+
Sbjct: 465 ------------HETAKVQALSDGEELADAIATDEAGESKEGVLVVLDRTPFYAEMGGQV 512

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G       +L++T V+K  +G FVH   +  G ++    +   +D   R  +  NH+
Sbjct: 513 ADYGYIASGDAKLKVTQVKKTPKGYFVHTCELLDGTIKVGDEVTAFVDEARRMAICRNHT 572

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL  +LG HV Q GS        FD TH   +T  EL  +E  VN+ I  +LP
Sbjct: 573 ATHLLQKALREVLGEHVHQAGSYQDDKITHFDFTHFSAVTPEELTEVERRVNEKIFASLP 632

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV + +  E+A   GA AL G KY   VRVV     D G  S+  CGGTHV +T +I   
Sbjct: 633 VVIQNLPIEEAKKMGAMALFGEKYGSVVRVV-----DAGGWSTEFCGGTHVQNTSQIGCF 687

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I+SESS+ AGIRRIEA TG      L  + + L   A+ LK +   +V  R E +  E 
Sbjct: 688 KILSESSVAAGIRRIEATTGFGVLRLLDERTDVLAKTAAALKANNLKDVADRAEAMAAEL 747

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++        K ++    +     +   +  V  +S  ++   +  L+ ++D ++ K  +
Sbjct: 748 KETNKQLDGLKAEMAAAKVDGLFENAADVDGVRIISAYLTGTGADTLREMVDKVRDKAPN 807

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            + +LVG +   K  + + V+ +   R   A  L +  A + GG GG G+P  A +G  +
Sbjct: 808 AVTVLVG-NDGSKTMMAVGVSANAKARGLKAGVLVKKIAAIAGGNGG-GKPDFAMAGIRD 865

Query: 882 GNKADQAIAGVASFLK 897
            +K D+A+  V   +K
Sbjct: 866 ISKIDEALNAVPEIVK 881


>gi|254775877|ref|ZP_05217393.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 900

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/929 (35%), Positives = 486/929 (52%), Gaps = 70/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+GE    GG P ++E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGEKFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ   N Y+ DL + +I A        Y+    ++ V +R+I DH R+++ LI
Sbjct: 234 VERVAFVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  ARLL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V S       + ++G  AF L+DT+G P+++  ++
Sbjct: 354 IARIAVAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D + F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 ASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFDQTPF 520
                                    + +  I   G+ V     G     +VE+V D+TP 
Sbjct: 472 ----------------------SSEARILGIFVDGKRVPVVTHGGDGADRVELVLDRTPL 509

Query: 521 YAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +D
Sbjct: 510 YAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVD 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            Q RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   IE
Sbjct: 570 PQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  +  V T     E A A GA AL G  Y ++VRVV +    GG  S  LCGG
Sbjct: 630 EVTNQAVQADFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGG 685

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 686 THVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 745

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
             RV  + E  R  +    + +L               +I +V  ++  +S  + + +L+
Sbjct: 746 PARVANLVERLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLR 805

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVLGGGG 867
           S++  ++ K+ S   ++  I++ +  SV   V  +         A DL +  A  +  G 
Sbjct: 806 SLVGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDLVKQLAAPV-DGR 864

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG+  +AQ  G +    D A+  V S +
Sbjct: 865 GGGKADLAQGSGKDPAGIDAALDAVRSEI 893


>gi|282882868|ref|ZP_06291473.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297279|gb|EFA89770.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 874

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/908 (36%), Positives = 511/908 (56%), Gaps = 50/908 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+    IR  FL FF+K GH++LPS SLIP ND +L+   +GM P K  FTG+  P  
Sbjct: 5   MKNLGLHEIRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPG 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + VTT QKC+R G    D+DNVG+T+RH TFFEMLGNFSFG YFK+  I  A++ LT   
Sbjct: 65  KRVTTCQKCIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++++  L++TVY +D+EAF +WK   G++ D+IIR+   DNFW + E GP GPC+EI+ D
Sbjct: 121 EINKDDLWVTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVD 179

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +G            EG+R+IE+WNLVF QF++  K     L   +IDTGMGLER+ATVLQ
Sbjct: 180 RGLKYGSIDERPGGEGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              N ++ID    +I   E+++G KY  +    V+ RVI DH+R+ +FL+ D + P+NEG
Sbjct: 240 GTNNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEG 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + RLLG     +  L   +    G  Y EL++    I++ ++ E+E
Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKTTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F  T++ G+ +LD  +  L    ++IL+G+ +FKLYDT+G P D+ ++IL  +G    D
Sbjct: 360 KFQMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFEM-D 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
           +  FN  +++Q+ RAR        G       S+  K+   +F+GY+             
Sbjct: 419 MDGFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKF-KNEFVGYEE------------ 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      +   + +  I +    V+     +K  ++ D+TPFY E GGQ+GDTG  
Sbjct: 466 -----------DKCQANIIGIFKDYNEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTGYI 514

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GD  + ++ D +K  EG+ +H   V  G + T+      ID   R  +  NHS THLLH
Sbjct: 515 DGDDFKCRVIDTKKTREGLHLHIVEVLDGEV-TKSPCFAEIDVVRRNNIRRNHSVTHLLH 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ILG HV+Q GS +  D LRFD TH + ++  E+K +ED VN  I + L V T + 
Sbjct: 574 KALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEDRVNQKIFEALSVTTTVT 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           N + A   GA  L   KY D VRV+S+     G +S  LCGGTHV +T EI +  I+SES
Sbjct: 634 NPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +G+RRIE +TG      L         +A  LK ++ +++ ++     E +KL    
Sbjct: 689 GVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKLSSSLNEIKKLNKAI 748

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K   + ++L        +   +N+++H   + D   L+ + D ++ K+ + +++L+ 
Sbjct: 749 DSLKHSSDKDELSNILDEVKEKNGINYLTHKFKDKDVNSLRDIADMVRNKL-NSVVVLLA 807

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              + K + +  +++DL+ + ++A  + +  +KV GGGGG GR  MA +GG +  K  +A
Sbjct: 808 TENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVCGGGGG-GRADMATAGGRDLGKVSEA 866

Query: 889 IAGVASFL 896
           +  +   +
Sbjct: 867 LKTLEGLI 874


>gi|262527560|sp|B1HUK4|SYA_LYSSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 908

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/923 (35%), Positives = 489/923 (52%), Gaps = 65/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 22  MKAVDIRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRI 81

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K   
Sbjct: 82  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 137

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 138 FDPELLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 194

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G                E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 195 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 254

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--------------RVIVDHLRS 281
           V+Q    N+D DLF  +I+  E+    KY+  + V+               +VI DH+R+
Sbjct: 255 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRT 314

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ 
Sbjct: 315 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 374

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           +    I+  +++E+ RF +TLD GL + + V         + + G  AF+LYDT+G P++
Sbjct: 375 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGADAFRLYDTYGFPIE 434

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F  A+EEQR RARA    + S   +     L     A++F+G
Sbjct: 435 LTEEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 491

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +D L                         ++ + A++  G++ + A  GQ+  V+  +TP
Sbjct: 492 FDTL-----------------------VANTEIAAMIVNGQVEKVASEGQEALVILAKTP 528

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ D+G    D     + DVQK   G  +H  IVE G +  E ++   +   +
Sbjct: 529 FYAEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDD 588

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  V
Sbjct: 589 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 648

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ +  ++ VV   M  + A A GA AL G KY D VRVVS+     G +S  LCGG HV
Sbjct: 649 NEKVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 703

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +
Sbjct: 704 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTK 763

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-----EVDSKELKSVMD 814
           V+ +  +Y++LQ  +     ++       +     N      S       D+  L+ +MD
Sbjct: 764 VQALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHSSFYKSRSKDNNLLRQMMD 823

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            L+  +   +I+L  +  +   ++   +T     +        +  + L    GG RP M
Sbjct: 824 DLKALMPKAVIVLGAVDGDLSDAMCRGITIINRWQLPCWKYREIWCQKLVVVIGGVRPDM 883

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +G  + +K D+A+  V  ++K
Sbjct: 884 AMAGAKDASKLDEALLSVYDYVK 906


>gi|323341496|ref|ZP_08081737.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
 gi|323091107|gb|EFZ33738.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644]
          Length = 910

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/920 (34%), Positives = 505/920 (54%), Gaps = 69/920 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+FF+  GH+++ S+ L+P +DPTL++ NSG+   K  F G   P    +T
Sbjct: 35  SSAQVRQMYLDFFKGKGHDVMKSAPLVPHDDPTLLWINSGVATMKKYFDGTVVPKNHRIT 94

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  + F +
Sbjct: 95  SSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSEEWFAM 150

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D+ A + W K  G+    I      DNFW + E GP GP SEIF+D+G
Sbjct: 151 DPEKLYVTVYPKDDAARECW-KEVGVEDSHIYEA--EDNFWDIGE-GPSGPDSEIFYDRG 206

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E ERY+EIWN+VF +F  +       LP  +IDTGMGLER+
Sbjct: 207 QEMNNVSEDDPENYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMGLERV 264

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGN--NIVNHRVIVDHLRSSSFLIADG 289
            +V Q    N++ DLF  +I  + ++    + Y  +    ++ +VI DH R+ +F I DG
Sbjct: 265 VSVFQHAKTNFETDLFMPIIDETAKMAKGDVHYGDDAEKDISFKVIADHARAVTFAIGDG 324

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M SAYPE+++    I++
Sbjct: 325 ALPSNEGRGYVIRRLIRRAVMHGQKLGVEGAFLYKLVPIVGKIMESAYPEVLEQSEYIQK 384

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +R+E++RF +TL  G+ LL  ++S      +  L G   FKLYDT+G PL++ ++I   
Sbjct: 385 VIRNEEDRFNETLKDGVGLLADLISETKAKGETKLAGAGVFKLYDTYGFPLELTKEIAAD 444

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           +GL  +D   F++ +++Q+ RAR+      S   +     L +    ++++GY+ L    
Sbjct: 445 QGL-DVDKAGFDEEMQKQKERARSARGNAKSMGVQNGL--LTDIKTPSEYVGYEKLAAD- 500

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                  I+K I+   ++V+    G+  +V+FD+TPFYAE GGQ
Sbjct: 501 ----------------------GILKDIIVDNKLVDVVSEGE-AQVIFDKTPFYAEMGGQ 537

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G    +  ++  ++ DVQ    G  +H   V    ++ +    L ++ +   ++  
Sbjct: 538 VADKGIIKNEDGKVVAEVKDVQHAPNGQNMHTLRVL-AEMKKDAKYRLEVNVEFHDKVKK 596

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + P+ LRFD T     T  EL+ +E  VN+ I  
Sbjct: 597 NHTATHLLDQALRDVLGEHTHQAGSLVEPNYLRFDFTKMGATTPEELEKVEKIVNEKIWA 656

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+PV T + + E A   GA AL   KY D VRVV       G +S   CGG HV +T EI
Sbjct: 657 NMPVETVVTDIESAKKLGAIALFTEKYGDTVRVVK-----AGNYSMEFCGGNHVENTNEI 711

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764
            L  IVSES + AG+RRIEA+T + A  +L  ++  LK  A+ +KV+Q   V  +V+ + 
Sbjct: 712 GLFKIVSESGVGAGVRRIEAVTSKEAFEYLEHRNVLLKETAAEMKVAQIKEVPHKVQGLQ 771

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           E+ ++L+   +  + +   +       +   +A    ++  +      +L+S+ D  ++K
Sbjct: 772 EQIKELENKVSALEDKFASQQAKDVFKNVQTVAGKTLIAAAVKVSGMNQLRSLADQWKEK 831

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             S +++L G +   K S+++  ++D +     A DL +  A ++GGGGG GRP++AQ+G
Sbjct: 832 SLSDVLVL-GSASGDKVSLIVAASDDAIKSGIKAGDLIKAIAPLVGGGGG-GRPNLAQAG 889

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G       +A+     +L +
Sbjct: 890 GKKPEGLPEALKAAEKWLAE 909


>gi|10803041|gb|AAG23689.1|AF297520_1 alanyl-tRNA synthase [Haemophilus ducreyi]
          Length = 783

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/820 (39%), Positives = 477/820 (58%), Gaps = 56/820 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           M+GNFSFG YFK  AIQ AW+ LT  K   L + +LY+TVY+ D+EA+ +W K  G+ ++
Sbjct: 1   MMGNFSFGDYFKHDAIQFAWEFLTSEKWLHLPKEKLYVTVYETDDEAYDIWHKTVGVPSE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
            IIRI  N       DNFW+M +TGPCGPC+EIF+D GE   GGLPG++E +G+RYIE+W
Sbjct: 61  HIIRIGDNKGVPYASDNFWAMGDTGPCGPCTEIFYDHGESFWGGLPGTAEEDGDRYIEVW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLERM  V+Q   +NY+ D+F+ LI+    +  
Sbjct: 121 NIVFMQFNRQADGTLAKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLH 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           +    N   + RVI DH+R+ S+LI DG++P+NEGRGYVLRRI+RRA+ +  LLG  E  
Sbjct: 181 VADLDNK--SLRVIADHIRACSYLIVDGVIPSNEGRGYVLRRIIRRAVRHGNLLGAKEAF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+P L   MG A   L   +  I++TL++E+E+F +TL+RGL LL+  L+ + +++ 
Sbjct: 239 FYKLVPTLAKVMGQAGEILTDKQSYIQKTLKTEEEQFARTLERGLALLEEALTKV-ENQT 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+VAFKLYDT+G PLD+  D+   R +  ID  SF   +  QR RA++ S        
Sbjct: 298 LSGEVAFKLYDTYGFPLDLTADVCRERDI-VIDEASFEIEMTAQRERAKSSS------NF 350

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + S+ +    T FIGYD                            + V A+   G+ 
Sbjct: 351 GADYNSVIKVEAETAFIGYD-----------------------CFNAEAKVIALFSNGQA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V++  SG+   VV D+TPFYAE GGQ+GD+G       +  + D QK  + +F H   V 
Sbjct: 388 VDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLITTAFCQFAVADTQKYGQ-VFGHIGQVV 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L     +   +D   R+ ++ NHSATHLLH AL  +LG HV Q GS ++ + LRFD 
Sbjct: 447 SGSLAIGDIISAQVDIARRQAITANHSATHLLHSALRQVLGEHVVQKGSLVSENVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           + S+ ++ A+L+ IE  VN  I QNL V    M+ E A   G  AL G KY D VRVV +
Sbjct: 507 SQSQAVSKAQLEEIERIVNRQIRQNLAVTIETMDIETAKEKGTVALFGEKYGDVVRVVGM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   S  LCGGTHV  TGEI L  ++SES++ AGIRR+EA+T + A + L  Q + 
Sbjct: 567 -----TDFSIELCGGTHVKHTGEIGLFKLISESAVAAGIRRVEALTAENAINWLHNQQKI 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCH---KIADVNF 796
           +   A  LK    ++V ++ ++ ++ +  + +L H K KL             +I  +N 
Sbjct: 622 IHQSAELLKTDSLSLVDKIYQLQDKIKRNEKELQHFKDKLAAQAGAELAKQVVQINGINV 681

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   +  ++SK L++++D L+ ++ S +I++ G     K ++++ VT+DL ++ NA +L 
Sbjct: 682 VIQKLEGIESKSLRTMVDDLKNQL-SSVIVVFGSVSADKVNLIVGVTKDLSNKVNAGELV 740

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            L A+ + GG GGGRP MA +GG      D A+A    ++
Sbjct: 741 GLIAQQV-GGKGGGRPDMAMAGGTEPQHLDTALAFAKQWI 779


>gi|309775356|ref|ZP_07670361.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916873|gb|EFP62608.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 875

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/915 (36%), Positives = 503/915 (54%), Gaps = 60/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  S IR  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKQLTGSQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +
Sbjct: 61  NRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                + +LY++VY +D +A+++W ++  +    I++  T+DNFW + E GP GP SEIF
Sbjct: 117 WIGFPKEKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE          L     E +RYIE+WN+VF QF+ + +   +E   LP+ +IDTGM
Sbjct: 174 YDRGEAYDPQGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKEYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  +I A+EQ T ++Y +  N +  RVI DH+R+ +F +A
Sbjct: 234 GLERLVCLVQGGETNFDTDLFLPIIHATEQYTSLRYADAENKMAFRVIADHIRTVTFALA 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L +NEGRGYVLRR++RR + +A+ L      M  L+P +   M   YP L +    I
Sbjct: 294 DGALFSNEGRGYVLRRVLRRGVRFAKKLNIQGAFMYKLVPVVYDIMKDYYPYLEEKLDYI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +++E+ERF  TL  G  LL  V+       +++G  AFKLYDT+G PL++  +I   
Sbjct: 354 ARLVKAEEERFHATLADGEKLLLQVMEEKKDSHVIDGKTAFKLYDTYGFPLELTVEIAQE 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G + +D   F+  +++QR RARA      S  ++ I   L E    + FIGYD+     
Sbjct: 414 SGYS-VDKDGFDAEMQQQRERARAAREAAESMGSQSI--DLMEFTRESTFIGYDV----- 465

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                S+ V A+ + G  V+      + +V+FD T FYAE+GGQ
Sbjct: 466 ------------------RHTSATVIALFKDGVRVDAIS--DEGDVIFDTTVFYAESGGQ 505

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G    +G++  + +  K      + H ++  G LR + ++ L +D + R  ++ NH
Sbjct: 506 VGDSGTLRAEGVQAVVNNTTKAPHKQHLSHVVITEGELRVQDTVTLQVDERKRDIITSNH 565

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  ++G+H+ Q GS ++ + LRFD TH + +   +LK IE  VN  I+ + 
Sbjct: 566 SCTHLLQSALKQVVGTHIQQAGSFVSEEYLRFDFTHYEKVNEEQLKKIEQLVNQYISAHY 625

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V    M  E+A  SGA AL   KY D VRVV++     G  S   CGG HV++T EI +
Sbjct: 626 TVSKVEMPIEEAKKSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGV 680

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A      +D  L S+A+ LK+     V  +V ++ +E
Sbjct: 681 CKIISEESIGSGIRRITAKTGYDAYCEFAKEDATLHSIAADLKLKGISKVEEKVVQLLDE 740

Query: 767 YRKLQLIHAKRKL---QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +L+   A  +     L   DL      + +   +   +   D+K LK ++  ++ + +
Sbjct: 741 AAQLKKELAALQASMFALKANDLVHKMQPLNNRQVLIERVDGADAKALKDIVSNIRSQKE 800

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           + ++ L  +  ++   V       +       DL R +A V+ GG GGGRP MAQSGG +
Sbjct: 801 NCVVFLAAVKDDRVTFVAGADALAVQSGIKCGDLVREAA-VICGGKGGGRPDMAQSGGKD 859

Query: 882 GNKADQAIAGVASFL 896
            +K ++A+  + + L
Sbjct: 860 ASKVEEALHLIKNML 874


>gi|284929441|ref|YP_003421963.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A]
 gi|284809885|gb|ADB95582.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A]
          Length = 880

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/905 (35%), Positives = 513/905 (56%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F++   H++ PS+SLIP  DPT++ T +GM+PFK IF GQEK  +  +T
Sbjct: 9   TGNEIRDKFLHFYKGKKHQIFPSASLIPR-DPTVLLTIAGMLPFKPIFLGQEKSSFSRIT 67

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND+DNVG T RHHTFFEMLGNFSFG YFKE++I+ AW+L T+ F L  
Sbjct: 68  TSQKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEQSIRWAWELSTQIFLLPP 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V++ D+EAF +W+ I G+   +IIR+   DNFW   +TGPCGPCSE+++D    
Sbjct: 124 ESIVVSVFESDDEAFNIWENIIGIPQTRIIRMGEKDNFWKAGKTGPCGPCSELYYDFHPE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G    + E+  R+IE +NLVFM++ +      F L K +IDTGMGLERMA +LQ+  N
Sbjct: 184 L-GEQNLNLEDDSRFIEFYNLVFMEYSRDENGNLFPLGKKNIDTGMGLERMAQILQKVPN 242

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I++   +  ++Y   E N   + ++I DH+R+   +IADGI  +N  RGY
Sbjct: 243 NYETDLIFPIIESILNIIAIEYRHAEENTKKSLKIIGDHIRAVIHMIADGITASNTDRGY 302

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRI+RR + + RL+G     +  +          +YPE+ + ++ I + L  E++ F 
Sbjct: 303 VLRRIIRRIIRHGRLIGIEGKFINKIAQTAIQISEKSYPEVREKEIFISKELSKEEDIFL 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RG  LL  ++ +  K   ++G  AF LYDT+G PL++ Q+I     L  ++I  F 
Sbjct: 363 KTLERGEKLLCEIIDNTIKPNQISGLDAFILYDTYGFPLELTQEIAEESQLK-VNIDEFY 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++ Q+ R++A    +      +I   L     AT+F GY  L  S             
Sbjct: 422 EQMKLQQCRSKAAHENINLSLGYEI-NKLISDVDATKFTGYSDLNSSV------------ 468

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      +VK I+   ++V++A  G  V+++ D TPFYAE+GGQ+ D G  +G   
Sbjct: 469 -----------VVKKILVNQKVVQQAEKGNNVQIILDSTPFYAESGGQVSDHGYLVGHKS 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I D+QK++E +F+H+  +E G L T  +L   +D   R+ + +NH++THLL  AL  
Sbjct: 518 FIRINDIQKESE-VFIHYGKIEEGYLLTNETLDAVVDNNYRQCIKLNHTSTHLLQAALRK 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            L S ++Q GS +T D LRFD  +   IT  +++ IE+ VN  I++   V    M+ + A
Sbjct: 577 NLDSSITQAGSLVTFDRLRFDFQYPHQITIEQIEQIENTVNFWISEKHDVSIENMSLKVA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              GA A+ G KY++ VRV+ +        S  LCGGTHV++  EI L  I+S++ I +G
Sbjct: 637 KEKGAIAMFGEKYSEEVRVIDIP-----EISMELCGGTHVNNIAEIGLFKIISQTGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777
           +RRIEAITG     +L  +D  +K+L    KV    +  R+  +  + +  + QL   ++
Sbjct: 692 VRRIEAITGSAILEYLKVKDSIVKNLCEHFKVKPEEIQKRIISLQTDLKDTQKQLEIVQQ 751

Query: 778 KLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           +L +     + D++     D+  +   +  VD K L+   + LQ K+  G ++L      
Sbjct: 752 ELAMVKSDKLLDIAESLDNDLKIIVSNVGNVDKKALQHSAERLQNKLGEGAVVLGATLPG 811

Query: 834 KKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            K S++   ++ +      +A       A++  GG GGGRP++AQ+GG + +K ++A+  
Sbjct: 812 NKVSLVASFSKKIYKDKNLSAGKFIGEIAQICEGG-GGGRPNLAQAGGKDASKLEEALLT 870

Query: 892 VASFL 896
             + L
Sbjct: 871 AKNKL 875


>gi|150004460|ref|YP_001299204.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|205829986|sp|A6L1L8|SYA_BACV8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149932884|gb|ABR39582.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
          Length = 871

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/918 (36%), Positives = 495/918 (53%), Gaps = 74/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ V
Sbjct: 1   MTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +D
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D + E     +PG    +++  + IEIWNLVFMQF ++       LP   IDTGMG
Sbjct: 179 EIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I 
Sbjct: 239 FERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD   
Sbjct: 419 LRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++  +   +                             ++V   TPFYAE+
Sbjct: 471 YETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAES 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   ++I D +K+   + +H  I ++     ++ ++  +D + R   +
Sbjct: 503 GGQVGDTGVIVSEFETIEIIDTKKE-NNLPIH--ITKKLPEHLDVPMMACVDTEKRAACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I 
Sbjct: 560 ANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIR 619

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHV +TG
Sbjct: 620 ENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + + 
Sbjct: 674 KIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKY 732

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+ 
Sbjct: 733 IDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A +
Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 851 GGKNPDGLNAAVDKVIEL 868


>gi|296117815|ref|ZP_06836398.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969046|gb|EFG82288.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 902

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/923 (35%), Positives = 492/923 (53%), Gaps = 63/923 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P Y     
Sbjct: 14  THEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPYPNGLA 72

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT      
Sbjct: 73  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWALLTNSVDDG 128

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL++TVY +D+EA  +W    G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 129 GFGLEPDRLWVTVYLDDDEAADIWHDKVGVPKERIQRMGMEDNYWSMGVPGPCGPCSEIY 188

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQE---RFILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ  +     K        LPK +IDTGMG+
Sbjct: 189 YDRGPEY-GVEGGPEADDNRYMEIWNLVFMQNIRGEGDGKGNFEILGELPKKNIDTGMGV 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----NIVNHRVIVDHLRSSSFL 285
           ER+A +LQ   N Y+ DL   +I  +E+VTG  YE       N V  RVI DH R++  L
Sbjct: 248 ERVACILQNVDNVYETDLLAPVIAEAEKVTGASYEDPKAERINDVRFRVIADHSRTAMML 307

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P+NEGRGY+LRR++RR +  ARLLG    ++   +  +   M  +YPE+ Q + 
Sbjct: 308 ILDGVTPSNEGRGYILRRLVRRIIRSARLLGAQAEVLERFMNTIMDTMELSYPEIAQNRE 367

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F KTL+ G    D V +        ++ GD AF+L+DT+G P+D+  +
Sbjct: 368 RILRVALNEEKSFLKTLESGTHRFDEVAAAAKSQGKTVVKGDEAFELHDTYGFPIDLTLE 427

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+ SF+ A+ +QR RA+A +     G  ++  +        T F GY+ L
Sbjct: 428 MAAEAGL-DVDMDSFDAAMAQQRERAKADNRAKKHGHADETLYREWVDNQPTIFTGYEEL 486

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                     + V  +V+ GE V  A  G+++EV+ D +P YAE
Sbjct: 487 ASD-----------------------AKVIGLVRDGEKVTSAGEGEQIEVILDHSPLYAE 523

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+ D G     G  L + DVQK  + ++VH A V  G L    ++   +D Q R   
Sbjct: 524 SGGQMADRGRIFTGGTVLDVNDVQKIGKKLWVHKATVASGGLDLGSAVTAEVDQQWRHGA 583

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ +++ +L  I    N  +
Sbjct: 584 TQAHTATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSADQLDEIALIANQAV 643

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L V T   + E+A A GA AL G  Y + VRVV +    GG  S  LCGGTHV+ + 
Sbjct: 644 DSDLAVNTIETSLEEAKAMGAMALFGENYGNNVRVVEI----GGPFSIELCGGTHVAHSS 699

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + ++ ESS+ +G RRIEA +G  A  +   +   + +++  LKV   ++ GR+  +
Sbjct: 700 QIGPVSVLGESSVGSGARRIEAYSGMDAFKYYSKEAALVDAVSKDLKVPSDDLPGRIAAL 759

Query: 764 WEEYRKLQLIHAKR-KLQLNVEDL-SCHKIADVNFMSH----IISEVDSKELKSVMDALQ 817
            ++ ++ +   AK  + QL  +      +  D+N        +   V + +L+++   L+
Sbjct: 760 TDKLKQAEKEIAKLHQAQLQAKSAEFVAQAQDINGFKVLTLDLPQGVAAGDLRTLATDLR 819

Query: 818 KKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++  +  II+L   S +K   +       +     + D+ +L  + +  G GGG+P MA
Sbjct: 820 NRMQNEDAIIVLAAASGDKLPFIAAATKSAVARGVKSGDIVKLFGEYV-DGRGGGKPDMA 878

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q  G N    +Q  A V  F  K
Sbjct: 879 QGAGNNPGGVEQGFAAVRDFADK 901


>gi|262189584|ref|ZP_06047986.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
 gi|262034534|gb|EEY52872.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93]
          Length = 781

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/804 (41%), Positives = 470/804 (58%), Gaps = 59/804 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFKE AIQ AW+ LT    L + RL +TVY+ D+EAF +W K  G+ AD+I
Sbjct: 1   MLGNFSFGDYFKEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRI 60

Query: 152 IRITTN--------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWN 202
           IRI           DNFW M +TGPCGPC+EIF+D GE I GG PGS E +G+R+IEIWN
Sbjct: 61  IRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGEHIWGGPPGSPEEDGDRFIEIWN 120

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            VFMQF +        LPK S+DTGMG+ER++ ++Q   +NY+ID+F+ LI+A+    G 
Sbjct: 121 NVFMQFNRHADGTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIG- 179

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
            Y+     + RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG      
Sbjct: 180 -YQDLTNQSLRVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFF 238

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             L+  L   MG+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L
Sbjct: 239 HKLVGPLAEVMGTAGAELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQLS-GQVL 297

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G+  FKLYDT+G P D+  D+   RG + ID   F QA+EEQR RAR        G   
Sbjct: 298 DGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAREA------GQFG 350

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
             + SL +    T+F GY   RG                        S+V+ +  +G  V
Sbjct: 351 TDYNSLIKSATNTEFCGYTASRG-----------------------QSVVREMFVEGAEV 387

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
               +G K  +V D TPFYAE+GGQ GDTG    D     + D QK    I  HH ++ +
Sbjct: 388 STLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQ 446

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G+L T   +   +D + R  +S+NHSATHLLH AL  +LG HV+Q GS +  + LRFD +
Sbjct: 447 GVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFS 506

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
           H + +T AE+K +E  VN  I  N  + T IMN ++A A GA AL G KY+D+VRV+S+ 
Sbjct: 507 HLEAMTPAEIKEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM- 565

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G  S+ LCGG H S+TG+I L  I+SE  I AGIRRIEA+TG+ A  +L  Q    
Sbjct: 566 ----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQ--- 618

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
               +        +  + + + +E ++L+   A ++    +      +IA VN +   ++
Sbjct: 619 ----AQHDAKVSEMAAKAKLLEKEIQQLKDKLAAKESAGLIN--QVKQIAGVNVLVAQLN 672

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
             D+K L+ ++D L+ ++ SGIIML G   E K  ++  VT DL ++  A +L  + A  
Sbjct: 673 GADNKALRGMVDDLKNQLSSGIIML-GNVAEGKVGLIAGVTNDLTNKVKAGELVNMVALQ 731

Query: 863 LGGGGGGGRPHMAQSGGPNGNKAD 886
           + GG GGGRP MAQ+GG + +   
Sbjct: 732 V-GGKGGGRPDMAQAGGTDAHALP 754


>gi|290968328|ref|ZP_06559869.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781603|gb|EFD94190.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/906 (38%), Positives = 509/906 (56%), Gaps = 52/906 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +LEFF++  H  L S SLIP NDP+L+   +GM P K  FTG+  P    V
Sbjct: 4   MTGNEIRKAYLEFFKRKRHLQLHSFSLIPENDPSLLLIGAGMAPLKPYFTGKLVPPSPRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R G    D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+  +LD
Sbjct: 64  TTSQKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAISWAWEFLTEVLELD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +LY+TVY +D EA+  W  + GL  ++I +    DNFW + E GPCGP SEIF+D G 
Sbjct: 120 TDKLYVTVYPDDTEAYGYWHTVIGLPEERIFKC--EDNFWEIGE-GPCGPDSEIFYDLGA 176

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  +   + +RY+EIWNLVF Q+ +  + +   L K +IDTG GLER+A+V+Q+
Sbjct: 177 ERGCGKPECTVGCDCDRYLEIWNLVFSQYNRTAEGKYEPLAKKNIDTGAGLERLASVIQQ 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           K +N++ DL   +I+    +    Y +    V  +VI DH+R+ + +I+DGILP+NEGRG
Sbjct: 237 KESNFETDLIFPIIEEVITLCHGDYTDPQQKVAMKVIADHIRAITVMISDGILPSNEGRG 296

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RRA+ + RLLG  +  +  L+  +   MG  YPEL + + LI++ + +E+++F
Sbjct: 297 YVLRRVLRRAVRFGRLLGIRQLFLSGLVETVLAIMGEEYPELREHEALIKKVINTEEKQF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL +G+ LLD +L+  G  + L+G   FKLYDT+G P+++ ++I   +G+  ID+  F
Sbjct: 357 SETLVQGMELLDSLLAKAGTAKTLSGQEVFKLYDTYGFPVELTEEIAAEQGVT-IDMNGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++EQ+ RARA                                  +K +  D   L +
Sbjct: 416 AAAMKEQQERARAA----------------------------RADVAAKVLTPDTTSLDR 447

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +         ++ +  + + G+  E    G+ + V+ D+TPF+AE GGQLGDTG     G
Sbjct: 448 QTLQYAEGVTTATIVMLGKDGQEAEAVHDGETITVILDRTPFHAEGGGQLGDTGVLTAHG 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  +TD +    GI    A V  G L+   ++ + +D +    L+ NH+ATHLLH AL 
Sbjct: 508 GKAVVTDTKALPNGIIYMIAGVMEGSLKKGETVTVAVDTERHAALARNHTATHLLHTALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+HV+Q GS +TPD LRFD TH  P+T+AEL+  E  VN  I +N PV+   MNRE+
Sbjct: 568 QVLGNHVNQAGSLVTPDHLRFDFTHFSPVTAAELREAEQLVNREILKNTPVMVTEMNREE 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY D VRVVS+     G  S  LCGG+HV ST E+    I+SES    
Sbjct: 628 AKQKGATALFGEKYGDVVRVVSI-----GDFSCELCGGSHVKSTAEVGTFRIISESGTGT 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEAITG  A +    + + L   A+ LKV   ++V ++ ++ EE +  +    + K
Sbjct: 683 GVRRIEAITGAAALAKAQAEAQILAQAAAVLKVKPESLVTKLTQLAEELKITEREVQRLK 742

Query: 779 LQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                  +            V   + +    D   L++  D L  K   G+++L G+  +
Sbjct: 743 KDAAAAAVDRLAATTQHYGSVAVSAAVAPADDMDGLRTFADLLLDKQGGGVVLL-GMVHD 801

Query: 834 KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K + +  V + D     +A  + + +A+  GG GG GRP MAQ+GG    K + A+   
Sbjct: 802 GKVNFVCKVAKADTKKGLHAGKIIKAAAQAAGGNGG-GRPDMAQAGGKEPEKLEAALRAG 860

Query: 893 ASFLKK 898
              + +
Sbjct: 861 CEVVTQ 866


>gi|154148426|ref|YP_001406547.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|205830014|sp|A7I206|SYA_CAMHC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|153804435|gb|ABS51442.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 845

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/895 (39%), Positives = 518/895 (57%), Gaps = 57/895 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-TTV 64
            IR  FL+FF   GHE++ S+ L+P +D +L+FTN+GMVPFKNIFTG        + T+ 
Sbjct: 2   DIRKEFLDFFASKGHEIIASAPLVP-DDASLLFTNAGMVPFKNIFTGAVPRPTPPIRTSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   LD+ +
Sbjct: 61  QTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKENAIAYAWEFITEILKLDKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183
           LY+TV+++D+EAF++W K   ++ ++I R   +DNFW+M +TGPCGPCSEIF+DQGE   
Sbjct: 121 LYVTVHEKDDEAFEIWAK--HIAKERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEYF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQFE+        LPK SIDTGMGLER+  + +   +N
Sbjct: 179 HGKEDYMGGDGDRFLEIWNLVFMQFERDKAGNLSPLPKPSIDTGMGLERVTAIKEGVFSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           YD  +F  LI A E++ G  Y+  +  ++RVI DH+RS +FLIA G+    EGRGYVLRR
Sbjct: 239 YDSSIFMPLIHAVEKLCGKPYKYESGASYRVIADHIRSITFLIAQGVNFDKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  EP M  L+  +C  MG  Y  L++ K  I+E ++ E+ERF  T+ 
Sbjct: 299 ILRRALRHGYLLGLKEPFMYKLVDNVCELMGHHYSYLLEKKETIKEIIKLEEERFLSTIS 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            GL L    L++    ++ +G++AFKLYDT+G PLD+  D+L   G   +D   F++ + 
Sbjct: 359 AGLELFKAQLANTK--DVFSGEIAFKLYDTYGFPLDLTADMLREIG-KKVDEKKFDELMN 415

Query: 424 EQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EQ++RA+A   G G    EK  + +L EK+G  +FIGY                      
Sbjct: 416 EQKARAKASWKGSGDKIKEKGDFKALLEKFGENKFIGY---------------------- 453

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
           +     S I+  +      V+E  +G    ++ D+TPFYA++GGQ+ DTG   G     +
Sbjct: 454 ETMKSQSKILAILNNDFRNVDELKAGNIGWIMLDETPFYAQSGGQIYDTGLINGSN---K 510

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +TD QK   G+ +         L+    +   +D   R + + +HSATHLLH AL  ILG
Sbjct: 511 VTDTQK-FFGLNLSEVE-TSTNLKVGDIVKCEVDEA-RIETARHHSATHLLHLALREILG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           S V Q GS +  + LRFD T+ K +TS +L  IE+NVN  I++     T IM+  +AI S
Sbjct: 568 SGVGQAGSSVDSERLRFDFTYPKSLTSEQLLKIENNVNSQISKGGASKTEIMDINEAIKS 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+   KY D+VRV+++        S   CGGTHV +  EI   YIV ES + AG+RR
Sbjct: 628 GAIAMFSEKYGDKVRVLTLG------ESKEFCGGTHVRNLWEIGSFYIVKESGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  + A ++      +   + + LK +    +  ++++ +E + L+   +K      
Sbjct: 682 IEAVCSKAAINYAKNFRSEFSEVQNALKSN--EALSAIKKLKDEIKSLKNEISKASAAKV 739

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           ++      + + N +  ++SE D   +K+ +D L+ +    + +   + ++ +  +   V
Sbjct: 740 ID------LDEKNGIKFVVSEFDGD-IKTKIDELKNENDKIVAVFFKV-EDGRVQIAAGV 791

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                    A ++ +  AK+LGGGGG GR   A +GG +  K D+A+      +K
Sbjct: 792 KNAP---LKAGEIVKQIAKILGGGGG-GRDDFATAGGKDMTKIDEAVNFARDLIK 842


>gi|206602304|gb|EDZ38785.1| Alanyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 891

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/909 (40%), Positives = 523/909 (57%), Gaps = 47/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   +R  FL +F  +GH+++PS+SLIP  DPTL+FTN+GMVPFK+IF G EK   +  
Sbjct: 1   MNSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW  LTKE  +D
Sbjct: 61  VSIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           +R L++TVY ED+EA +LW++++ +  D+I+R+   DNFW M +TGPCGPCSEI  DQGE
Sbjct: 121 RRLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +RY+EIWNLVFMQ+++ ++     LP+ SIDTGMGLER++ V+Q+
Sbjct: 181 RFSCGSPDCKVGCDCDRYLEIWNLVFMQYDRNSEGVLSPLPRPSIDTGMGLERLSAVIQK 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           K +NY+ DLF  LI+  E  + + Y   EG+    +RV+ DHLRSS FL+ +GI P+NEG
Sbjct: 241 KDSNYETDLFMPLIRTIETYSRVPYGAGEGSLDHAYRVMADHLRSSVFLLHEGIAPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RG+VLRRI+RRA+ + R LG   P++  L  ++   M   YPEL  + L I++ LR E+ 
Sbjct: 301 RGHVLRRIIRRALLFGRELGLPHPILPALADSVAEMMAKPYPELRTSLLRIQDVLRLEEG 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL L+  +L  L K   ++  G++ F L+DTHG PLDI++D    +G+  +D
Sbjct: 361 RFHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQGI-LLD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + +EEQR R R+   G      E    S      + +F GY+             
Sbjct: 420 YKGFEEKMEEQRERGRSSWTGKK----EDFPLSSDRLKESVEFQGYEKT----------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        +   V  +++  E V+E  +G+ V VV D+T FY E GGQ+GD G  
Sbjct: 465 ------------SLQGTVLFLLKGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDL 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           IG    +++   +K   G  V    V  G +    ++   +D + R+    +H+ATHLLH
Sbjct: 513 IGPFGYIRVRGAKKPYPGWIVLAGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLH 572

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG  V Q GS + P+ LRFD T  +P++   L ++E  VN  I +N PV  R M
Sbjct: 573 AALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDAREM 632

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +  A+  GA A    KY DRVRVV V        S  LCGGTHV STG+I  L I+ E+
Sbjct: 633 EKSKALDMGALAFFDEKYGDRVRVVQVPG-----TSVELCGGTHVRSTGQIGSLLILQET 687

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + AGIRRIEA+ G  A    +   ++LK L   L+    ++  +   I  E    Q   
Sbjct: 688 GVAAGIRRIEAVAGPLAYQKAVTWRQELKGLRELLEAGTSSLEEKTRTILRENAAYQKEI 747

Query: 775 AKRKLQL-NVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +L ++E+    K    +         +S  DS+EL++ MDA++ KI SG I+L+G
Sbjct: 748 QSLKSRLFSLEEKHSRKEMLEVDGHQLAVIHVSLEDSRELRARMDAIKSKIPSGAILLIG 807

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + + K + L   + DL + F      +  A  + GG GGG+P  A+ GGP  +     +
Sbjct: 808 ETTD-KLAFLGWTSPDLGEAFPISQWVKTLAAEV-GGKGGGKPSWAEGGGPKPDDVGSFL 865

Query: 890 AGVASFLKK 898
               + +++
Sbjct: 866 QSAKTRMEE 874


>gi|123965286|ref|YP_001010367.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|205830181|sp|A2BTZ9|SYA_PROM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123199652|gb|ABM71260.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 886

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/906 (35%), Positives = 500/906 (55%), Gaps = 52/906 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F++   H ++PSSSLIP +DPT+M T +GM+PFK +F G         +
Sbjct: 11  TGDEIRKAFLDFYESKSHLIIPSSSLIP-DDPTVMLTIAGMLPFKPVFLGLRNRPSPRAS 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L+T  + L  
Sbjct: 70  SSQKCLRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQWAWELITDIYHLKP 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + I+V+ ED E+ K+W+   G+  ++IIR+   DNFWS   TGPCGPCSE+++D    
Sbjct: 126 ENIIISVFHEDHESEKIWRDNIGIIPERIIRLDEKDNFWSSGATGPCGPCSELYYDFNPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ+ + +      L   +IDTGMGLERMA +LQ+KTN
Sbjct: 186 K-GLKNIDLEDGDRFIEFYNLVFMQYNRDSNGMLSDLKFKNIDTGMGLERMAQILQKKTN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +++ +  +  + Y   +    ++ +++ DH R+   LI+DG++ +N GRGY
Sbjct: 245 NYETDLILPIVKEAALIANIDYFSSDDRTKISLKILGDHTRAIIHLISDGVVASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLL   +  +  L     + M + YP+L   K  I   +  E++RF 
Sbjct: 305 ILRRLLRRMIRHGRLLAIKDDFLSRLASIGISLMQNTYPDLKNNKERILREINIEEKRFL 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TLDRG  LL+ ++     +++++G  AF+LYDT+G PL++ ++IL  + +  +D+  F 
Sbjct: 365 ETLDRGEKLLNDLIR--SGEKLISGTKAFELYDTYGFPLELTKEILEEKNI-NVDLEGFT 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + +E Q+ RA+A S  +       I   + + +  T F GYD L                
Sbjct: 422 REMEAQKERAKAASQKIDLTLKGSIEREI-DLFDQTIFEGYDSLNS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                      IVK I  +   VE+A+ GQ V+++ DQT FY E+GGQ+GDTG    +  
Sbjct: 467 ---------QGIVKGIFFESNSVEKAIQGQTVQIILDQTSFYGESGGQVGDTGTISRNDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +K   IF+H   V +G +     +   +D  NR +   NH+ATHLL  AL  
Sbjct: 518 EIDIDKVIRKKN-IFLHCGTVRKGEICRNQLVETRVDKFNRAKAESNHTATHLLQSALKL 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+   VSQ GS +  + LRFD    +P++  ++  +E  VN  I++N P+  + M+++DA
Sbjct: 577 IIDKSVSQRGSLVGFNKLRFDFNSPQPLSKEQISQVESLVNSWISENHPIEVKNMDKDDA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           + +GA A+ G KY D VRVV V        S  LCGGTHV +T E+    I+SE  I +G
Sbjct: 637 LKAGALAMFGEKYGDIVRVVDVPG-----VSMELCGGTHVQTTSEVGSFKIISEIGISSG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA++GQ    +   +DE +  L+  LK     +  R++ +  E         + K 
Sbjct: 692 IRRIEALSGQLVLDYFKERDETVNKLSDLLKARPSQLFERIDSLQTELVNKNKEIQRMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           ++          S  KI   + + + I  +D   L+S    L  K+    ++++G   + 
Sbjct: 752 EIAYFKYSSLSSSAKKIGSFSLIINQIDGLDGSSLQSAALDLTSKLGDKSVVILGGIPDT 811

Query: 834 --KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             KK   ++   +DL+ R  +A  L    +++  GG GGG+P+ AQ+G  + +K + A+ 
Sbjct: 812 EKKKLLFVVSFGDDLVRRGMHAGKLINEISRICSGG-GGGKPNFAQAGAKDIDKLNDALE 870

Query: 891 GVASFL 896
                L
Sbjct: 871 YARKDL 876


>gi|134098622|ref|YP_001104283.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291009600|ref|ZP_06567573.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|205830197|sp|A4FBD3|SYA_SACEN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|133911245|emb|CAM01358.1| putative alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 890

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/921 (35%), Positives = 497/921 (53%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F E F+K GH ++PS+SLI  +DPTL+F N+GMV FK  F G     Y   
Sbjct: 1   MQTHEINQRFTEHFRKAGHTVVPSASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR G    D+D VG+T RH+TFF+M GNFSFG YFKE A++ AW LLT      
Sbjct: 60  TSIQKCVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAMEHAWGLLTSSQADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TV+++DEEA  LW+K++G+ A++I      DN+W M   GP GPCSEI+
Sbjct: 116 GYGFDPERLWVTVFEKDEEAAALWQKVTGIPAERIQVRDAKDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ  +      +       LP  +IDTGMG+
Sbjct: 176 YDRGPKY-GREGGPVVDEDRYIEIWNLVFMQDIRGELPPKEGHPPIGELPTKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G  Y  N  + V  RVI DH RS   L+ D
Sbjct: 235 ERVACLLQGVENVYETDLVRPVIAKAEELSGRSYGANHEDDVRFRVIADHARSGVMLVGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RR +   RLLG  EP++      +   M  +YPEL+     I+
Sbjct: 295 GVTPGNEARGYVLRRLLRRIIRSTRLLGVHEPVLGEFAAVVRDAMAPSYPELVTEFDRID 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +R+E++ F  TL  G  + D  ++   K     L G  AF+L+DT+G P+D+  ++  
Sbjct: 355 SVMRNEEDAFLSTLTAGSKIFDLAVADTKKAGGTQLAGAKAFQLHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + + EQR RA+  +    SG  +   + +L +++G T+F+GY  L+ 
Sbjct: 415 EQGLS-VDEHGFRELMSEQRRRAKEDAKSRKSGHGDLSTYRTLLDQHGTTEFLGYTDLQ- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G   + A +G +VE++ D+TPFYAE G
Sbjct: 473 ----------------------AQSRVLGLLVDGVPAKSAAAGTEVELILDRTPFYAEGG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ DTG   G G+ +++ DVQ+   G+FVH A V  G L  + SL   +D + R  +  
Sbjct: 511 GQIADTGRLTGPGVEVEVHDVQRAVPGLFVHRAKVTAGELGVDTSLEAAVDSKRRHAIER 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSATHL+H A+ +  G   +Q GS  +P  +RFD T    ++ A L  +E+ VN  +  
Sbjct: 571 SHSATHLVHAAVRSAYGKRAAQAGSLNSPGRMRFDFTAPAAVSGAVLGGVEEEVNSYLQN 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V +     + A+  GA AL G KY D+VRVV     D G +S  LCGGTHV   G++
Sbjct: 631 DVEVQSYTTTMDRAMELGAVALFGEKYGDQVRVV-----DMGDYSRELCGGTHVGRIGQL 685

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            ++ +V++SS+ +G+ R+EA+ G  A  H+  +   +  LA   KV    +  R+  +  
Sbjct: 686 GVVKLVADSSVGSGVHRVEALVGMDAMRHISKEHLLVSRLAEQFKVPAEELPERIAGVVS 745

Query: 766 EYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIIS----EVDSKELKSVMDALQKK 819
             R  +    + ++   L        K  DV+ ++ +       VD   L+++   ++ +
Sbjct: 746 RLRSAEKELEQLRVAQVLQSAGELAGKGTDVHGVTLVAEQVPDGVDGGALRALAGEVRGR 805

Query: 820 IQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + S   ++ L     +K + V+ V T        A  L    A  + GG GGG+P MAQ 
Sbjct: 806 LGSRPAVVALFSADGDKVSFVVGVNTPAQDLGLKAGKLVPSFAAEV-GGRGGGKPDMAQG 864

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG N      AIA + + L +
Sbjct: 865 GGSNPAGITAAIAALRTGLDQ 885


>gi|72162469|ref|YP_290126.1| alanyl-tRNA synthetase [Thermobifida fusca YX]
 gi|83305862|sp|Q47N66|SYA_THEFY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71916201|gb|AAZ56103.1| alanyl-tRNA synthetase [Thermobifida fusca YX]
          Length = 889

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/921 (36%), Positives = 506/921 (54%), Gaps = 64/921 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + I   FL FF+KNGH ++PS+SLI   DPTL+  N+GMVPFK  F GQ  P Y  
Sbjct: 1   MKS-AEIARRFLAFFEKNGHTVVPSASLIA-EDPTLLLVNAGMVPFKPYFLGQRTPPYPR 58

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKCVR      D+D VG+T RH +FF+MLGNFSFG YFKE+AI LAW+LLT     
Sbjct: 59  ATSVQKCVRTI----DIDEVGKTTRHASFFQMLGNFSFGDYFKEKAIPLAWELLTTSVAD 114

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             F  D  RL++TVY +D+EA  +W++  GL  ++I R    DNFWSM   GPCGPCSEI
Sbjct: 115 GGFGFDPERLWVTVYLDDDEAATIWREKVGLPEERIQRRGKADNFWSMGVPGPCGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +FD+G    G   G   + +RY+E+WNLVFMQFE+     +        LP  +IDTGMG
Sbjct: 175 YFDRGPEY-GAEGGPVADEDRYLEVWNLVFMQFERGEGSGKEDYPILGELPSKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
           LERMA +LQ   N Y+ D    +++ + ++TG  Y  N    V+ RVI DH+R+++ L+A
Sbjct: 234 LERMAAILQGVDNIYETDTLGRILRRAAELTGTTYGENERADVSLRVIADHVRTATMLVA 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL-CTEMGSAYPELIQAKLL 346
           DG+ P NE RGYVLRRI+RR++   RLL   E   MH L A+    MG  YPEL      
Sbjct: 294 DGVRPGNEKRGYVLRRILRRSIRNLRLLSGDESFHMHDLTAVAIDAMGDQYPELRADADK 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   + +E++ F  TL  G  L +  +    +    + +G  AF+L+DT+G P+D+  ++
Sbjct: 354 IHSIIDAEEKNFADTLRAGTTLFNRAVRRTKETGGTVFSGADAFQLHDTYGFPIDLTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLL 463
               GL  +D  +F+Q ++ QR  A+  +     G  +  ++ +L E  G T+F+GY   
Sbjct: 414 AAEHGLK-VDEETFHQLMQRQRETAKRDAQAKKLGNADISVYGNLLETGGPTEFLGY--- 469

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                 +   + V  I+  GE    A  G +VE+V D+TPFYAE
Sbjct: 470 --------------------TDSESEARVLGIIVNGESTGAARKGDQVELVLDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           +GGQL D G    DG   + + DVQK  +G+FVH   V  G +  + ++   ID   R  
Sbjct: 510 SGGQLADKGTITVDGRGVVDVEDVQKPIQGLFVHRGTVREGEVVVDDTVHAAIDTGRRAS 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S +HSATHL+H AL   LG    Q GS   P  LRFD T  KP+ + E+  +E+ VN++
Sbjct: 570 VSRSHSATHLIHSALRNTLGPSAGQAGSENQPGRLRFDFTSDKPLDATEIAQVEEEVNEV 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +A+N+ V       ++A+  GA A+ G KY +RVRVV     D   +S  LCGGTHV++T
Sbjct: 630 LARNIEVQYLETTLDEALRMGALAMFGEKYGNRVRVV-----DMTEYSRELCGGTHVAAT 684

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G++ L+ ++ ESS+ +G+RR+EA+ G  A   +  +   +  L+  LK  +  +  R++ 
Sbjct: 685 GQLGLVKVLGESSVGSGVRRVEALVGLDALRRVSTESALVGQLSEQLKAPREELPQRIDS 744

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSVMDAL 816
           +    R  +    + +    ++       S     +   ++H + +   + +++ +   +
Sbjct: 745 LVSRLRAAEKEIERLRAAQVLQAAGKLAESARDHGNSRVVTHRVEDGTTADDMRKLALDV 804

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           + ++      ++ + G+  ++   V+ +  E       A +L  ++A+ LGGGGG GRP 
Sbjct: 805 RGRLGEDRPAVVAIAGVPSDRPVVVVAINKEAQQAGLKAGELVGVAARALGGGGG-GRPD 863

Query: 874 MAQSGGPNGNKADQAIAGVAS 894
           +AQ GG +    D A+  V  
Sbjct: 864 IAQGGGSDVTAIDTALRLVEQ 884


>gi|124514184|gb|EAY55699.1| Alanyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 891

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 520/912 (57%), Gaps = 53/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  FL +F  +GH+++PS+SLIP  DPTL+FTN+GMVPFK+IF G EK   +  
Sbjct: 1   MDSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW  LTKE  +D
Sbjct: 61  VSIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           +R L++TVY ED+EA +LW++++ +  D+I+R+   DNFW M +TGPCGPCSEI  DQGE
Sbjct: 121 RRLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGE 180

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVFMQ+++  +     LP+ SIDTGMGLER++ V+Q+
Sbjct: 181 RFSCGSPDCKVGCDCDRFLEIWNLVFMQYDRNAEGVLSPLPRPSIDTGMGLERLSAVVQK 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           K +NY+ DLF  LI+  E  + + Y   EG+    +RVI DHLRSS FL+ +GI P+NEG
Sbjct: 241 KDSNYETDLFMPLIRTIETYSRVHYGAGEGSLDHAYRVIADHLRSSVFLLHEGIAPSNEG 300

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RG+VLRRI+RRA+ + R LG   P++  L  ++   M   YPEL  +   I++ LR E+ 
Sbjct: 301 RGHVLRRIIRRALLFGRELGLPHPILPSLAESVAEMMAKPYPELRTSLSRIQDVLRLEEG 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL L+  +L  L K   ++  G++ F L+DTHG PLDI++D    +G+  +D
Sbjct: 361 RFHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQGI-LLD 419

Query: 415 IISFNQALEEQRSRARAHSLGLGSG---TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
              F + +EEQR R R+   G        ++K+  S+       +F GY+          
Sbjct: 420 YKGFEEKMEEQRERGRSSWTGKKEDFPLPSDKLKKSV-------EFQGYEKT-------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                           +   V  ++   E V+E  +G+ V VV D+T FY E GGQ+GD 
Sbjct: 465 ---------------SMQGTVLFLLNGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDV 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G  IG    +++   +K   G  V    V  G +    ++   +D + R+    +H+ATH
Sbjct: 510 GDLIGPFGYIRVRGAKKPYPGWIVLSGEVVSGKVSVGETIDQHVDEEARQGSERHHTATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL T+LG  V Q GS + P+ LRFD T  +P++   L ++E  VN  I +N PV  
Sbjct: 570 LLHAALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDA 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M +  A+  GA A    KY DRVRVV V        S  LCGGTHV STG+I  L I+
Sbjct: 630 SEMEKSKALDMGALAFFDEKYGDRVRVVQVPG-----TSVELCGGTHVRSTGQIGSLLIL 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E+ + AGIRRIEA+ G  A    +   ++LK L   L+    ++  +   I  E    Q
Sbjct: 685 QETGVAAGIRRIEAVAGPLAYQKAVTWRQELKDLRELLEAGTSSLEEKTRTILRENAACQ 744

Query: 772 LIHAKRKLQL-NVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 K +L ++E+    K    +         +S  D +EL+  MDA++ KI SG I+
Sbjct: 745 KEIQSLKSRLFSLEEKHSRKETLEVEGHQLAVLHVSLDDPRELRVRMDAIKSKIPSGAIL 804

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L+G + + K + L   + DL + F      +  A  + GG GGG+P  A+ GGP  +   
Sbjct: 805 LIGETTD-KLAFLGWTSSDLGEAFPISQWVKTLAAEV-GGKGGGKPSWAEGGGPKPDDVG 862

Query: 887 QAIAGVASFLKK 898
             +    S +++
Sbjct: 863 GFLQSAKSRMEE 874


>gi|150015988|ref|YP_001308242.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|205830028|sp|A6LSF6|SYA_CLOB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149902453|gb|ABR33286.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 879

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/909 (35%), Positives = 524/909 (57%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               + +R  +L+FF+   H  + S SL+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FMKTNDLREAYLKFFESKDHLRMDSFSLVPKNDKSLLLINAGMAPLKPYFTGLQEPPKRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++NVG T+RH TFFEMLGNFSF  YFK+  I  AW+ +T+  +L
Sbjct: 63  ITTCQKCIRTG----DIENVGITSRHGTFFEMLGNFSFADYFKKEIIPWAWEFITEVLEL 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F++ 
Sbjct: 119 PKDRLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHGA-GPCGPCTEIHFNRS 177

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E IP       +  + ++ IE WNLVF QF+   K     L   +IDTGMGLER+AT++Q
Sbjct: 178 EEIPTNADEFVKLADEDKIIEFWNLVFTQFDGDGKGNYEKLANTNIDTGMGLERLATIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
           EK + ++ID  ++++    ++  +KY  N    ++ R+I DH+RS +F+I+D ++P+NEG
Sbjct: 238 EKNSIFEIDTLENILSEVAKLANVKYGENQKTDISLRLITDHIRSITFMISDDVMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  E  + +L   +  +   AYPEL   K  I++ ++ E++
Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKEAFLCNLCDTVIRDSSEAYPELNSKKEYIKKVIKIEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD G+ +L+G +S L    +++L+G   FKLYDT G P+++ ++IL   GL+ +D
Sbjct: 358 KFRETLDSGMEILNGFISELKAKNEKVLSGVDGFKLYDTFGFPMELTKEILEDEGLS-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F++ ++ QR RAR+         T+     +      T F GYD             
Sbjct: 417 EDAFHEEMKVQRERARSARKVSNYMGTDVKTLDIIPAEVETVFDGYD------------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      + +++ VK +++  +  +    G K  +V D TP YAE GGQ+GDTG  
Sbjct: 464 ----------NDTLNAEVKVLIEGEDFTDAITEGNKAIIVTDVTPLYAEMGGQIGDTGVI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             DG +  + D +K   G  VH   V  G L+   ++ + +D   R  +  NH+ATHLL 
Sbjct: 514 FNDGFKANVLDTKKNIGGKIVHFVEVVSGELKVGDTVTIEVDKVRRENIKKNHTATHLLD 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL+ +LGSHV Q GS ++ D LRFD +H + +T  E+  +ED VN+ I    PVVT +M
Sbjct: 574 KALTEVLGSHVHQAGSYVSNDRLRFDFSHFEAMTEEEINKVEDLVNEAITSVTPVVTEVM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  +   KY D+VRVVS      G +S  LCGGTH+ +TG+I L  I+SES
Sbjct: 634 DLQEAKNSGAIGIFDDKYADKVRVVS-----AGEYSKELCGGTHIDNTGKIGLFKIISES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA+ G+ A   +  + + LK +++ LK S+  ++ ++++  +E ++     
Sbjct: 689 GIAAGTRRIEAVIGKEAYKIVNEKKDLLKEISTKLKCSEKELLAKLDQQVKELKEKDKEI 748

Query: 775 AKRKLQ---LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +   + ++D+  S   + D+N +S+ + +VDS  L+ V + ++ K  + I++L+ 
Sbjct: 749 TALKSKFASMGIDDIVSSSRNVKDINVISYELKDVDSDTLRDVCEKVRDKAPNSIVLLMS 808

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +   K  +  + T+D + +  +   L +  + +LGGGGG GRP MAQ+GG    K  +A
Sbjct: 809 ANA-GKVIICAMATKDAVAKGAHCGKLIKEISSMLGGGGG-GRPDMAQAGGKMPEKIQEA 866

Query: 889 IAGVASFLK 897
           I      ++
Sbjct: 867 IEESYKIVE 875


>gi|282901157|ref|ZP_06309088.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193989|gb|EFA68955.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii
           CS-505]
          Length = 878

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/905 (37%), Positives = 514/905 (56%), Gaps = 49/905 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+F+ +  H+ LPS+SL+P  DPT++ T +GM+PFK IF GQ    ++  T
Sbjct: 7   SGNHIRQLFLDFYTQRQHQPLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRAAEFKRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI   W++ T+ F+L  
Sbjct: 66  TSQKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFELPA 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL ++V++ED+EAF +WK+  G+   +I R+  +DNFW    TGPCGPCSEI++D    
Sbjct: 122 ERLVVSVFEEDDEAFNIWKQQVGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +        L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDDHIDLEDDSRFIEFYNLVFMQYNRDVSGNLTPLQNKNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + ++  + Y   + N  V+ +VI DH+R+   +IAD I  +N GRGY
Sbjct: 241 NYETDLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADDIRASNVGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G     +  +     +   S YP L Q + +I+  L  E+  F 
Sbjct: 301 ILRRLIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQREAVIKAELEREESNFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           KTLDRG  LL  ++  +      I++GD AF LYDT+G PL++ Q+I   + L+ +D+  
Sbjct: 361 KTLDRGEKLLGEIIQEVKHQGLTIISGDSAFTLYDTYGFPLELTQEIAQEQNLS-VDVEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  + +Q  RA+A    +   T +     L E   +T+FIGY  L              
Sbjct: 420 FNTEMHKQVERAKAAHETIDL-TVQGSLDKLAEHIHSTEFIGYRQL-------------- 464

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                      ++ +  ++ +G     A  G  V++V D+TPFYAE+GGQ+GD G   GD
Sbjct: 465 ---------STTAKIAVLLVEGIAQSTAPVGTNVQIVLDKTPFYAESGGQIGDQGYIFGD 515

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G+ ++I DV+K+++  F+H   +ERG ++   S+   +D  NRR+   NH+ATHLL  AL
Sbjct: 516 GLLIKIEDVKKESD-FFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAAL 574

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             I+   +SQ GS ++ D LRFD    K +T  E++ +ED VN  I+Q  P    I+   
Sbjct: 575 KKIVDEGISQAGSLVSFDRLRFDFNCPKSLTEDEVQQVEDLVNAWISQAHPAQVEILPLP 634

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A A GA A+ G KY D+VRV+          S  LCGGTHV++TGEI +  I+S+  + 
Sbjct: 635 EAKARGAVAMFGEKYGDQVRVIDFPG-----VSMELCGGTHVNNTGEIGVFKIISQVGVS 689

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AGIRRIEA++G     +L  +D+ +K L+   KV    +  R+  +  E R  + +    
Sbjct: 690 AGIRRIEAVSGAAVLDYLNVRDKVVKDLSDRFKVKPEEIPDRITILQTELRHNEKVIQNL 749

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K QL +            + +   +   ++++D + LK   + L +KI +G ++L  I +
Sbjct: 750 KSQLAIVKSDTLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIINGAVVLASIPE 809

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K S++   +  + ++   A       AK+ GGGGG G+P++AQ+GG + +K  QA+  
Sbjct: 810 PGKVSIVAAFSSHVNEKGLQAGKFVGNIAKLCGGGGG-GKPNLAQAGGRDASKLPQALES 868

Query: 892 VASFL 896
               L
Sbjct: 869 AKDNL 873


>gi|297588300|ref|ZP_06946943.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573673|gb|EFH92394.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 873

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/909 (36%), Positives = 513/909 (56%), Gaps = 53/909 (5%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +  ++ IR  FL +F + GH ++ S  LIP +D +L+  N+GM P K  FTG++K   
Sbjct: 1   MKDYGLNEIRKKFLNYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKK 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ Q+C+R      D+D VG+T RH TFFEMLGNFSFG YFK+ AI  AWD LT E 
Sbjct: 61  DRATSSQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKKEAITWAWDFLTNEL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ +  L+ITVY+EDEEA+ +W    G+S ++++++   DNFW + + GPCGPCSEI  D
Sbjct: 117 EVPKDILWITVYEEDEEAYNIWVNEVGVSPERVVKLGKGDNFWEL-DQGPCGPCSEIHVD 175

Query: 179 QGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           +G            +EGER++E+WNLVF QF +    +   +   +IDTGMGLER+  VL
Sbjct: 176 RGFEFDPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHPNIDTGMGLERITMVL 235

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           +   N ++I L K +I+  E+++G+KY+ N  N V+ R+I DH+R+ +FLI DG++P+NE
Sbjct: 236 ENADNIFEIGLVKDIIKTIEEISGVKYKENHQNDVSIRIIADHVRAMTFLIYDGVIPSNE 295

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            RGYVLRR++RRA  + +LLG  +  +  ++ +      S YPEL + +  I +   +E+
Sbjct: 296 QRGYVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEERDRIVKIANAEE 355

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ++F +TLD GL +LD +L     D + +G+ AFKLYDT+G P+D+ ++++       +D 
Sbjct: 356 KKFQETLDLGLSILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKELVGEVN-KTVDE 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + +EEQ+ RAR        G +    +   E    T+F GYD L+           
Sbjct: 414 DEFKKLMEEQKERARGSRNESNMGWSSDKKYG--EGLPETKFDGYDSLKD---------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V  I  + E      +GQ   ++ D T FY E GGQ+GD G   
Sbjct: 462 -------------ESEVIEIYGEDE--NNLNAGQMGIILLDCTTFYGEGGGQVGDKGIIY 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  + ++ D +K  + +F+H+  V  G L     + + +D  NRR +  NHSATHLLH 
Sbjct: 507 NDNFKAEVYDTKKTGKKVFLHYVKVIEGSLNVGDKVTIEVDELNRRDIMKNHSATHLLHQ 566

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G HV+Q GS +  + LRFD+TH + +T  +L+ +E  VN+ IA  +PV    M+
Sbjct: 567 ALKDVVGDHVNQAGSYVDGERLRFDITHFEAVTKEQLEKVEQIVNEKIALGIPVKIDEMS 626

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E + + GA  L   KY D VRVV +     G +S  LCGGTHV +T +I +L I+SESS
Sbjct: 627 LEQSQSIGARGLFEDKYQDVVRVVQM-----GDYSKELCGGTHVKTTSDIQMLKILSESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVE---EIWEEYRKLQ 771
           + AG+RRIEAITG+    +L  +D  + ++   LK S +  +  R+E   E  +E +K  
Sbjct: 682 VAAGVRRIEAITGRAVYKYLNERDSLIDTVKHSLKASNEDEITRRIEMNTEEIKELKKKL 741

Query: 772 LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                + L  N++ +      I         +S +D+   +   + ++ K++ G+++L  
Sbjct: 742 KDITNKDLSSNIDSVIEDAVDIDGTKVCVFALSGLDNNSFRDFGENIKSKLEDGVVILA- 800

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S E K S + +VT+  + +   A D+ R  AKV  GG GGGR   AQ+G  + +K D+A
Sbjct: 801 NSDESKVSFITLVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDEA 859

Query: 889 IAGVASFLK 897
           +      +K
Sbjct: 860 LQKGIETVK 868


>gi|116491184|ref|YP_810728.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1]
 gi|122276634|sp|Q04EQ9|SYA_OENOB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116091909|gb|ABJ57063.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1]
          Length = 885

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/919 (35%), Positives = 495/919 (53%), Gaps = 67/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N + IR  FL+FFQ  GH++ PS SLIP +DP+L++ NSG+   K  F G   P    +T
Sbjct: 5   NSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  + + +
Sbjct: 65  NAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPEWYGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  +L+IT Y  D E  +LW+  +   A   I    +DNFW + E GP GP +E+FFD+G
Sbjct: 121 EPEKLFITYYPRDTETKELWESQADFVAGHTIPQ--DDNFWDIGE-GPSGPDTEVFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
                      E     E ERY+EIWN+VF QF              LP  +IDTGMGLE
Sbjct: 178 PKFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289
           R+ ++ +    N++ DLF  +I+  EQ++G +Y    +  V+ +VI DH+R+ +F I+DG
Sbjct: 238 RVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVITDHIRAVTFAISDG 297

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP N GRGYV+RR++RRA+ + R L   +P +  L+P +   M + YPE+++ +  I  
Sbjct: 298 ALPGNTGRGYVIRRLLRRAVMHGRKLEIEKPFLTQLVPIVGKIMEAYYPEILENEDKIIP 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
            ++SE+ RF KTL  GL LLD ++    KD    ++G  AFKL+DT+G PL+  ++    
Sbjct: 358 VIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATQISGKDAFKLFDTYGFPLESTEEQAAD 417

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            GL  +D  SF++ +++Q++RAR     L + G  ++   SLK     + ++G+      
Sbjct: 418 AGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQDEALMSLK---VPSVYVGWKQSSVD 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + + AI+   + V++A +GQK  ++FD+TPFYAE GG
Sbjct: 474 D----------------------AKIAAIIVDDQQVDDAKAGQKALLIFDKTPFYAEMGG 511

Query: 527 QLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G       ++  Q+TDVQ       +H A +    L+    + L +D      +S
Sbjct: 512 QVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISD-LKIGQKVNLRLDMHRHVAVS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  ++  ++ Q GS + PD LRFD TH  P+ +  L  IED VN  IA
Sbjct: 571 KNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDLVNQKIA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LPV     + E A   GA A+ G KY  +VRVVS+     G  +    GGTH  +T E
Sbjct: 631 DALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTHAKNTSE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           + L  IVSES I AG RRIEA+TGQ A   L   ++ LK  A FL   +  +V  ++ ++
Sbjct: 686 LGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVPDKIVDL 745

Query: 764 WEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQK 818
               +  + Q+     K      D    K  +    S+I +++D+     L+ ++D  ++
Sbjct: 746 QNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKIVDEWRQ 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  S +I+ +  +   KA ++    +   +   A ++ +  +  + GG GGGRP  AQ+G
Sbjct: 806 RAVSDLII-IATNNNGKALLVAASAK--PNEVKAGNVVKAISPKIQGG-GGGRPDFAQAG 861

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N      A+A V+ +L+
Sbjct: 862 GKNPAGIANALASVSEYLE 880


>gi|253570246|ref|ZP_04847655.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251840627|gb|EES68709.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 872

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/918 (35%), Positives = 494/918 (53%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRDSFKNFFETKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY TV++         D+EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +++A   ++G +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   +  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLEQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +  +       ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEISGKDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++I  FN  +++Q+ RAR       +      W +L+E  G T+F+GYD  
Sbjct: 419 ILRENGMT-VNIEEFNTEMQQQKQRARNA-----AAIETGDWVTLRE--GTTEFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V D TPFYAE
Sbjct: 471 EYEASILRYRQIKQKNQTL----------------------------YQIVLDCTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   +++ D +K+   + +H  I ++     E  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEVIDTKKE-NNLPIH--ITKKLPEHPEAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLL  AL  +LG H+ Q GS +TPD LRFD +H + +T  E++ +E  VN  I
Sbjct: 560 AANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVNAKI 619

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+P+   R +  E+A   GA AL G KY +RVRV+          S   CGG HV++T
Sbjct: 620 RANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFGS------SIEFCGGIHVAAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I ++ I+SESS+ AG+RRIEA TG R    L    + +  L S    +  ++   + +
Sbjct: 674 GNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAP-DLGIAIRK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    ++ + ++++     I +++ +  I   + + ++ +K++   L+ 
Sbjct: 733 YIEENAGLKKQVEDYMKEKEASLKERLLKNIQEIHGIKVIKFCAPLPAEVVKNIAFQLRG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I   +  + G     K  + ++++++L+     A +L + +AK++ GG GGG+PH A +
Sbjct: 793 EITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + AI  V   
Sbjct: 852 GGKNTDGLNAAIEKVLEL 869


>gi|319644298|ref|ZP_07998792.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|317384193|gb|EFV65166.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 871

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/918 (36%), Positives = 495/918 (53%), Gaps = 74/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F  FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ V
Sbjct: 1   MTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     +D
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D + E     +PG    +++  + IEIWNLVFMQF ++       LP   IDTGMG
Sbjct: 179 EIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +++A  ++ G  Y  +N   +  RVI DH+R+ +F I 
Sbjct: 239 FERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  +  M  LLP L   MG AYPEL   K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD  +  +     + ++G  AF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEISGVDAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   G+  ++   FN  +++Q+ RAR       +      W ++KE  G T F+GYD   
Sbjct: 419 LRENGMT-VNEEEFNAEMQKQKERARNA-----AAVETGDWITIKE--GDTHFVGYDFTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++  +   +                             ++V   TPFYAE+
Sbjct: 471 YETSILRYRQIKQKNQTL----------------------------YQIVLSDTPFYAES 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   ++I D +K+   + +H  I ++     ++ ++  +D + R   +
Sbjct: 503 GGQVGDTGVIVSEFETIEIIDTKKE-NNLPIH--ITKKLPEHLDVPMMACVDTEKRAACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I 
Sbjct: 560 ANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKIR 619

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHV +TG
Sbjct: 620 ENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVPATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SESS+ AG+RRIEAITG +    +    + L  L +    +  ++   + + 
Sbjct: 674 KIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKY 732

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+       K K       L  +  +I  V  +  II  + +  +K +   L+ 
Sbjct: 733 IDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +I + + +++G     K  + ++++EDL+    NA  L R +AK++ GG GGG+PH A +
Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +  + A+  V   
Sbjct: 851 GGKNPDGLNAAVDKVIEL 868


>gi|221632736|ref|YP_002521957.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155742|gb|ACM04869.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 878

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/919 (34%), Positives = 486/919 (52%), Gaps = 70/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  F+EFF + GH  +PSSSLIP  DPT++ T +GM      F G E+P +  +
Sbjct: 1   MQSSEIRRAFIEFFAERGHVQVPSSSLIPS-DPTVLLTTAGMQQMVPYFLGLERPPHTRL 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QKC R      D+D VG    H TFFEMLGNFS G YFK  AI  AW+ LTK   + 
Sbjct: 60  TSIQKCFRTV----DIDEVG-DESHLTFFEMLGNFSIGDYFKAEAISWAWEFLTKWLGVP 114

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
             R Y TV+ +DE +++ W+   G+  ++I ++   DN+W  +  TGP GP SEI +D+G
Sbjct: 115 AERWYPTVHPDDEFSYQYWRDQIGVPTERIFKL--EDNWWGPVGATGPNGPDSEIHYDRG 172

Query: 181 ECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G    G   +  R++E WNLVFM+F ++    +  LP+ +IDTGMGLER++ ++Q
Sbjct: 173 MEYGCGRTECGPGCDCGRFLETWNLVFMEFYKEADGTQRPLPRKNIDTGMGLERISLIMQ 232

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
              + ++ DLF  ++  +  + G++Y+       + RVI DH R  +FL+ DG+ P+NEG
Sbjct: 233 GVGSVFETDLFYPILSEAATIAGVRYKEQARVDRSLRVIADHARGVTFLVGDGVFPSNEG 292

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA+ + +LLG   P +  L+  +     S YP L + +  I   +R E+E
Sbjct: 293 RGYVLRRVLRRAVRHGKLLGIERPFLNQLVDVVIELFSSYYPNLNEQRERIHRVIRHEEE 352

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F +TL  GL   + +L  L    +++L GD AF+LYDT+G PL++ +++    G   +D
Sbjct: 353 HFQRTLSAGLSRFEALLDQLQRSGEQVLPGDEAFRLYDTYGFPLELTEELARESGFT-VD 411

Query: 415 IISFNQALEEQRSRARAH--SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
              F +ALE QR  +RA             +++    E+   T+F+GYD L         
Sbjct: 412 RAGFERALERQRELSRASVGRFADTQRQRAELYAQFSER--PTEFVGYDRLET------- 462

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                           ++ +  I+   ++ +EA +G+++E++ D+TPFY EAGGQ+GDTG
Sbjct: 463 ----------------TATIVGILGLSDLRQEAEAGEEIELILDRTPFYGEAGGQVGDTG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             + +   + + D Q+    + VH   V  G +R   S+   +D + R  +  NH+ATHL
Sbjct: 507 EIVAETGIVTVEDTQRPTPELIVHRGRVREGSIRVGQSVRAIVDAERRAAIRRNHTATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG H  Q GS + PD LRFD +H + ++  +L+ IE+ VN+ I ++L V  R
Sbjct: 567 LHAALRRVLGEHAVQAGSLVAPDRLRFDFSHHESVSPEQLRRIEEMVNEQIVRDLRVEVR 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            +   DA+A GA AL G KY D VRVVS++       S  LCGGTHVS TGEI    I  
Sbjct: 627 YLPLRDALAEGAIALFGEKYGDTVRVVSIDG-----FSKELCGGTHVSHTGEIGAFLITD 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+S+ +GIRRIEA+TG  A        +  +  A  L V    +   +E + ++ R  Q 
Sbjct: 682 ETSVASGIRRIEAVTGLAAARLARTLIDVSEEAARRLHVVPEQLPEAIERLQQQVRDQQR 741

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +    L    L        +I     +S  I       L+ V D L+  I SG+++L
Sbjct: 742 EIERLAADLAAARLAPLVERAARIDGFRVVSARIEVPSLDVLRRVGDRLRDAIGSGVVIL 801

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLS-------AKVLGGGGGGGRPHMAQSGG 879
            G + E +  +L + T D + R  +A  + +                       +AQ GG
Sbjct: 802 -GTAIENRPMILAMATPDAVQRGVHAGQVVQAVTPLLGGRGGGRP--------DIAQGGG 852

Query: 880 PNGNKADQAIAGVASFLKK 898
            + ++ D+A+A     +++
Sbjct: 853 ADVSRLDEALAAARGEVER 871


>gi|320011910|gb|ADW06760.1| alanyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 889

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/923 (36%), Positives = 505/923 (54%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW  LT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIEFAWAALTNSVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL+ITVY +D+EA ++W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y  +    V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADQGSDVSLRVVADHVRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVRDLVDVVVDTMGQQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  ++       ++L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + ++ G T+F GY  + G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADRSGVTEFTGYASIEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESKIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +Q+ DVQ+   G+ VH   V+ G +    S    ID   RR ++
Sbjct: 511 GQLADQGRIKLDSGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDNTRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ +DA   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   LK     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGVALVTGQVPDGTTADDLRKLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ G   ++ +  +   +   +I   E   +R   A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG N +    A+A V   + +
Sbjct: 865 QGGGQNPDAIGDAVAAVERLVTE 887


>gi|320335628|ref|YP_004172339.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319756917|gb|ADV68674.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 894

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/922 (36%), Positives = 495/922 (53%), Gaps = 68/922 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK------P 56
           + + IR  +L+FF+  GH  LPS SLI   DPT +FT +GM PFK  F G          
Sbjct: 8   STAEIREKYLQFFESKGHLRLPSHSLIAP-DPTTLFTVAGMQPFKPQFMGSAPKFSGVPG 66

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT- 115
            ++ VTT QKC+R G    D++NVGRT RH + FEMLGNFSFG YFK  AI  AW+ LT 
Sbjct: 67  EHRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMLGNFSFGDYFKRDAIHWAWEFLTG 122

Query: 116 -KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPC 169
            +   LD  +LY+T+Y++D+EAF  W +  GL    + R   ++NFW          GPC
Sbjct: 123 PEWMGLDASKLYVTIYEDDDEAFGYWTQEIGLDPSHVHRFGADENFWPADAPLKGPNGPC 182

Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQN---KQE--RFILPK 221
           GPCSEI+FD+G             + E  R++EIWNLVF QF++Q+           LP 
Sbjct: 183 GPCSEIYFDRGPAYGDDSWADYATTRESARFLEIWNLVFPQFDRQDPAADGSPVLADLPF 242

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
            +IDTGMGLER+A+V+Q+  + Y  D+FK L++   +++G  YEG   V+HRVI +H+RS
Sbjct: 243 KNIDTGMGLERIASVVQDVPDFYSNDVFKPLVERVAELSGKPYEGEVSVSHRVIAEHVRS 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +  +ADG++ +N GRGYV+R+I+RRA  +A LLG  EP +  L+P +   MG AYPE+ 
Sbjct: 303 VTMTVADGVVLSNTGRGYVIRKILRRASRHAYLLGLREPTLHKLVPLVVEAMGGAYPEVR 362

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
                +E  +RSE+ERF +TL+ G+  LD +L  + +   L+G+ AF LY T+G PLD+ 
Sbjct: 363 SEAARVEAAIRSEEERFLRTLESGMGRLDALLGKMERGATLSGEEAFTLYGTYGFPLDLT 422

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           ++I    G++ +D   F++ALE  +  ARA S   G      +   +     AT F+GYD
Sbjct: 423 REIAEEYGVS-VDEAGFDKALEADQELARAGSK-YGKSELFGVVAEVLGDLPATTFVGYD 480

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L                            V AIV  GE +    +G + +VV D+TP Y
Sbjct: 481 ELE-----------------------AEGRVLAIVSGGEPLSRLTAGSEAQVVLDRTPMY 517

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GG++GDTG    DG    + D +K   G+F+H   V  G L     +   ++   R+
Sbjct: 518 AEGGGEVGDTGVLTWDGGEAAVLDTRKTPGGVFLHTVEVLHGELSEGAEVRALVNPD-RQ 576

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               +H+ATHLLH AL  +LGS V Q GS + PD LRFD TH   +++ E+  +E  VN 
Sbjct: 577 ATERHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHGSALSADEVAQVEALVNR 636

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGT 697
            +  + PV  R M  ++A ASGA AL G KY D VRVVSVE    + D  V S  LCGG 
Sbjct: 637 WVTADFPVTWRTMPIDEARASGAMALFGEKYGDEVRVVSVEGGVPFGDTEVASRELCGGA 696

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ TGEI    I+S+ ++ AG+RR+EA+ G+ A   +  +       AS +  +   + 
Sbjct: 697 HVTRTGEIGAFVILSDENVAAGVRRVEALAGEAAVRWVRERLGAAGRAASSVNATVDQLP 756

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELK 810
            R+ ++  + +  Q   A  K QL    +          ++      +  +S V+  EL+
Sbjct: 757 ERIAQVQAQLKAAQGEIAGLKRQLAQAQMGGGSAGSQVRELGGFKVAAVRLSGVEGNELR 816

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              D+  ++  + + ++ G     K  V+    + +    +A  L    A   GG GG G
Sbjct: 817 GAADSFLEQTGADVAVVAG----DKGLVVKATKDAVGRGAHAGQLIGKLAAAGGGKGG-G 871

Query: 871 RPHMAQSGGPNGNKADQAIAGV 892
           RP MAQ+G  + + A  A+   
Sbjct: 872 RPDMAQAGVQDADAALGALDSA 893


>gi|260891458|ref|ZP_05902721.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260858841|gb|EEX73341.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 871

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/913 (36%), Positives = 521/913 (57%), Gaps = 60/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +
Sbjct: 1   MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   L+
Sbjct: 60  TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLE 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
           + RL+++VY  D+EA+++W K  G+ A++I+R+   DN+W+    G CGPCSEI++D   
Sbjct: 116 EDRLWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          ++G+R++EIWNLVF ++ +        LP+ +IDTG GLER+ +V+Q
Sbjct: 176 MGKNNEEAYRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERITSVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K NN+D DLF ++I+  + V  ++    N    ++I DH+R+S FLI DG+LP+NEGRG
Sbjct: 236 NKDNNFDTDLFTNIIKGIKSVLEIQ-GNENEEAIKIIADHVRASVFLIGDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+LR+I+RRA         ++    +  +  L+P +   M  AYPEL + +  IE+ +R 
Sbjct: 295 YILRKIIRRAFGAGSSAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRL 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  TL  G  +L+  +  L     + L  ++ FKLYDT G P ++ + IL  +G  
Sbjct: 355 EEERFATTLKNGTEMLEEEIQKLKAENQKELPAELTFKLYDTFGFPFELTKLILENQGFE 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
                 F + L EQ  R++     +     ++      EK+G T+F GY           
Sbjct: 415 A-SEEEFEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGYSQ--------- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  I +      E +SG   E++FD+TPFYAE+GGQ+ DT
Sbjct: 465 -------------NFEEKSTLLHIAK-----SEGISG--YEMIFDKTPFYAESGGQVADT 504

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSAT 590
           G         ++ +V KK + +F+H   + RGI     + + + ID   R+ +  NH+AT
Sbjct: 505 GIITSGEFEGRVVNVVKKHD-VFIHQVEITRGIAPAVGVEVKMQIDVNRRKDIQRNHTAT 563

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH  L   LG+HV Q+GS +  + LRFD +H + ++   ++ IE  VNDII  NL V 
Sbjct: 564 HILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAVSPEMIEKIEKGVNDIILSNLQVK 623

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               N EDA A GA AL   KY D VRVV ++      +S  LCGGTHV STGEI L  I
Sbjct: 624 INYENIEDAKARGAMALFSDKYGDVVRVVEIDG-----YSIELCGGTHVKSTGEIGLFNI 678

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SES I +G RRI A TG ++ +++   +EK+K ++   +  + NVV  +E+   + R  
Sbjct: 679 ESESGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAA 738

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +H + + +L   ++     +   + DV  +       +  ELK ++D  ++K+QSGII
Sbjct: 739 VKVHEEMQTKLVKYEINEMLENLETVNDVKVLKSSFENKNVDELKEIVDRGKEKMQSGII 798

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G +   KA  ++ VT+DL+ +  A ++ +++A+ + GG GGGRP  AQ+GG +G+  
Sbjct: 799 IL-GTNNNGKAIFVVGVTKDLISKVKAGEIVKVAAQ-VAGGNGGGRPDFAQAGGKDGSAV 856

Query: 886 DQAIAGVASFLKK 898
            +A+     F+ +
Sbjct: 857 KEAVEKAFEFITE 869


>gi|308276522|gb|ADO26421.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 905

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/922 (34%), Positives = 486/922 (52%), Gaps = 63/922 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AV 61
              IR  F   F K GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 18  THEIRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 77  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVAEG 132

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA  +W K  G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 133 GFGLDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSEIY 192

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ E+         +    LPK +IDTG+G+
Sbjct: 193 YDRGAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGLGV 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLI 286
           ER+A +LQ   N Y+ DL + +I  +E++TG  Y       +++  RVI DH R+   LI
Sbjct: 252 ERVACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMMLI 311

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+ + +  
Sbjct: 312 LDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENRER 371

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I +   +E++ F KTL  G  L +     +     ++L+G  AFKL+DT+G P+D+  ++
Sbjct: 372 ILKVALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTLEM 431

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F+  + EQR+RA+A +     G  +   +        T+F GY  L 
Sbjct: 432 AAEAGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSEL- 489

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  V E  +G +VE++ + +P YAEA
Sbjct: 490 ----------------------STESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYAEA 527

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ GD G  I     + + DVQK  + ++VH A V +G L    ++   +D Q R    
Sbjct: 528 GGQTGDRGTIIMGDTIVNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHSAR 587

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T+ +L  I+   N  + 
Sbjct: 588 QAHSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQAVD 647

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + ++A A GA AL G  Y   VRVV +    GG  S  LCGGTHV  + +
Sbjct: 648 VDWTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHSSQ 703

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I+ ESS+ +G+RRIEA +G  +  +L  +   ++ +A+ +K    ++  R+  + 
Sbjct: 704 IGPVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIASLT 763

Query: 765 EEYRKLQLI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQK 818
           ++ ++ +        A+ + Q         ++  V+ ++H ++E V S +++++   L+ 
Sbjct: 764 QKLKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDLKS 823

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++     +I L+      K   ++  T+  +     A DLA++    +  G GGG+P MA
Sbjct: 824 RLGDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDLAKVLGSYI-QGNGGGKPDMA 882

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q    +    D  +A +   ++
Sbjct: 883 QGSARDIAGFDSGVAAIKDEIR 904


>gi|326329808|ref|ZP_08196128.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325952394|gb|EGD44414.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 894

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/923 (35%), Positives = 487/923 (52%), Gaps = 65/923 (7%)

Query: 3   NVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           + + IR  F   F +N     H ++PS+SL+  +DP L+F N+GMVPFK  F GQ  P Y
Sbjct: 5   STAEIRRRFTAHFAENTEIGEHTVVPSASLL-LDDPNLLFVNAGMVPFKPFFLGQATPPY 63

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
              T+VQKC+R      D++ VG+T RH TFFEM GNFSFG YFKE AI LAW+L+TK  
Sbjct: 64  PRATSVQKCIRT----PDIEEVGKTTRHGTFFEMCGNFSFGDYFKEGAITLAWELVTKSV 119

Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
               F  D+  LY +V + DEEA  LWKK+SGL  D+I+R+  ++N+WSM   GP GPCS
Sbjct: 120 ADGGFGFDESVLYPSVLNGDEEAVALWKKVSGLPDDRIVRLPPSENYWSMGVPGPGGPCS 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTG 227
           EI  D+G           + G+RY+E WNLVFMQ      + ++       L +  IDTG
Sbjct: 180 EILIDRGPEFGADRD--WDAGDRYLEFWNLVFMQDNVVAARSKYDVDIDGPLAQTGIDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285
           +GLER+A ++Q K+N Y+ D+   +I+ + ++TG KY     + V  RV+ DH+RSS  L
Sbjct: 238 LGLERVAYLMQGKSNMYETDVVFPVIEKAMELTGKKYGAAYEDDVRFRVVADHVRSSLML 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGYVLRR+MRRA+   RLLGY +P M  LLP    +MG  Y +L     
Sbjct: 298 IGDGVTPGNEGRGYVLRRLMRRAIRNMRLLGYEDPAMPELLPISRDKMGETYTDLHTEWD 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
            I+    +E+E F KTL  G  + D   + +         GD AF+L+DT+G P+D+  +
Sbjct: 358 RIKRVADAEEEAFRKTLAAGTQIFDLAATEVKSSGSTTFTGDKAFQLHDTYGFPIDLTLE 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462
           +    GL  +D   F   + EQR RA+A +        +  ++  + +  G T +  Y  
Sbjct: 418 MAAEAGLE-VDEAGFRGLMTEQRERAKADARAKKGQHADLTVYRGILDTNGPTDWQAYTT 476

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                          S   A++++G+ V+     +  E+V D+TPFYA
Sbjct: 477 LDT-----------------------ESKPVALLREGKPVDVLGPEEIGEIVLDRTPFYA 513

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-LVLTIDYQNRR 581
           E+GGQ  D G    DG RL++ DVQ+  +G+ VH   V  G      S +   +D + R 
Sbjct: 514 ESGGQSADAGIIEFDGGRLEVVDVQRPVKGLVVHQVRVVDGEFHGGESLVHAKVDPEWRL 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                HS TH++H AL  +LG    Q+GS   P  LR D   +K +T  ++  IE+  N+
Sbjct: 574 GARQAHSGTHVVHAALREVLGPTALQSGSFNRPGYLRLDYGWTKGLTPEQMHEIEEVSNN 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVS 700
            +  +LPV    M    A   GA AL G  Y+D +VRVV +    GG  S  LCGGTHV 
Sbjct: 634 ALRADLPVSWDYMTLPQAKEWGAIALFGETYDDSKVRVVEI----GGPWSRELCGGTHVD 689

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            + +I  + + SE+S+ +G RRIEA TG     +L  + + +  L   LK   G+VVGRV
Sbjct: 690 HSAQIGTIVVTSEASVGSGNRRIEAYTGVEGFKYLARERDVVSELNLLLKTKSGDVVGRV 749

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
            ++ E  +  +   A+ +    +        S   +  V  ++  +  V   + +++   
Sbjct: 750 SDLMERLKAAEKEIARARTAQLLASGGSIAASAVDVNGVQVVAQRVPGVGGGDARTLAQD 809

Query: 816 LQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           ++ ++      ++L G + +K A V  V    +     A DL +  A V+ GG GGG+P 
Sbjct: 810 VRSRLGDAPAAVVLFGDADDKVAVVAAVNPAGIAKGVKAGDLIKELAPVV-GGRGGGKPD 868

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
            AQ GG    + D+A+A V S +
Sbjct: 869 FAQGGGTEVGRIDEAVAKVKSLV 891


>gi|254527157|ref|ZP_05139209.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538581|gb|EEE41034.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 886

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/908 (34%), Positives = 508/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SL+P +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+TK + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSS 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++V+ EDEE+ K+W++  G++ D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 DNIIVSVFHEDEESEKIWREEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ  + +  +   L   +IDTGMGLERMA +LQ+K+N
Sbjct: 186 K-GLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ + +++ + Y   +    ++ +++ DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIKKASEISSLDYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T+  +  +       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLLRRMVRHGRLLGITKEFLSDIASVGIKLMENYYPDLKNNNELILSEIKIEEVRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     +++ G  AF+LYDT+G PL++ ++I     +  +DI  F 
Sbjct: 365 ETLERGEKLLDEIIS--SGQKLITGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQ 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++ Q+ RA+A S  +   T E       + +  T F G D L                
Sbjct: 422 REMDAQKERAKAASSKIDL-TLEGSLEREIDSFNKTIFNGEDCLDS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + ++ I      V++A  GQ+V++V DQT FY E+GGQ+GD G       
Sbjct: 467 ---------EAKIQGIFLDSNFVKKASEGQRVQIVLDQTSFYGESGGQVGDIGIICSTDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +  V +K   +F+H  IV+ GIL    ++   ++   R + S NH+ATHLL  AL  
Sbjct: 518 EVLVDKVVRKKN-VFLHDGIVKNGILTVGQTIKTIVNPAKRARASANHTATHLLQSALKE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++  +VSQ GS +  + LRFD   SKP++  +++ +E  VN  I QN P+V + M + +A
Sbjct: 577 VVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKREA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY D VRVV V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGALAMFGEKYGDEVRVVDVPG-----VSMELCGGTHVKNTSELGCFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISK- 832
           ++          S   +   + + + I  +D   L+S    L  ++ +  +++L GI   
Sbjct: 752 EIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVILAGIPNP 811

Query: 833 -EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             +K   ++   ++++    +A  L    A++  GG GGG+P+ AQ+G  + +K D A+ 
Sbjct: 812 ENRKLLFVVSFGDEVVKIGLHAGKLINEIARICAGG-GGGKPNFAQAGARDIDKLDFALD 870

Query: 891 GVASFLKK 898
              + L+K
Sbjct: 871 YAKNHLQK 878


>gi|254717705|ref|ZP_05179516.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 768

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/777 (50%), Positives = 527/777 (67%), Gaps = 36/777 (4%)

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F L + +L +TVY  D++A   WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+
Sbjct: 1   FGLPKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFY 60

Query: 178 DQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS E +G+R+IEIWNLVFMQFEQQ  + R  LP+ SIDTGMGLER+A V
Sbjct: 61  DHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAV 120

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ   +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+SSFLIADG+LP+NEG
Sbjct: 121 LQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEG 180

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI+A+ LI ETL+ E+ 
Sbjct: 181 RGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEET 240

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
           RF KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ QD L  RG+A +D  
Sbjct: 241 RFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTE 299

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+               
Sbjct: 300 GFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYET-------------- 345

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                         ++ ++V+    V     G+ + VV +QTPFY E+GGQ GDTG   G
Sbjct: 346 ---------ESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISG 396

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +G  + + D QKK EG+FVH   V  G  +    + L +D   R ++  NHSATHLLH A
Sbjct: 397 EGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEA 456

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+II QN PV TR+M  
Sbjct: 457 LRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAV 516

Query: 657 EDAIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +DAIA GA AL G KY D VRVVS+       + G  +S  LCGGTHV  TG+I L+ I+
Sbjct: 517 DDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRII 576

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770
           SE  + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V+ RV  + +E +KL 
Sbjct: 577 SEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLE 636

Query: 771 -QLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            +L  A++KL L             +  VNF+  I++ V  ++LK + D  +K++ SG++
Sbjct: 637 RELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVV 696

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + +G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGGRP MAQ+GGP+G
Sbjct: 697 LFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 753


>gi|302874705|ref|YP_003843338.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690682|ref|ZP_07633128.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577562|gb|ADL51574.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 879

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/908 (34%), Positives = 510/908 (56%), Gaps = 48/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG  KP    
Sbjct: 3   FMGLNELREAYLKFFESKEHLRLPSYSLVPKNDKSLLLINAGMAPLKPYFTGLSKPERNR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKCVR G    D++NVG T+RH TFFEMLGNFSFG YFK   I  AW+ +T+   +
Sbjct: 63  ITTCQKCVRTG----DIENVGITSRHATFFEMLGNFSFGDYFKNEVIPWAWEFVTEVLKM 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +L++T+Y ED+EA+++W   + +    I R+   DNFW     GPCGPC+EI F++G
Sbjct: 119 PKDKLFVTIYLEDDEAYEIWTTKTDVDKSHIFRLGKKDNFWEHGA-GPCGPCTEIHFNRG 177

Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
             +        ++ + ++ IE WNLVF QF+   +     L   +IDTG GLER+A ++Q
Sbjct: 178 NAVVTTAEEFEAAADEDKIIEFWNLVFTQFDGDGEGNYEKLKSTNIDTGAGLERLAAIMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K + +++D   +++    +V G+KY  N  N ++ R+I DH+RS +FLI+DG++P+NEG
Sbjct: 238 GKESIFEVDTMNNILTEVTKVAGIKYGDNAKNDISIRIITDHVRSVTFLISDGVMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  E  + ++   +  +   AYPEL +    I++ +R E++
Sbjct: 298 RGYVLRRLLRRAARHGKQLGIKEAFLCNICDVVIRDSKEAYPELDEKADYIKKVIRLEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +T+D G+ +L   +  + ++    L G+ AFKLYDT+G P+++ Q+IL       ID
Sbjct: 358 RFRETIDSGMEILMSYVEEMKQENSDTLAGEKAFKLYDTYGFPIELTQEILEEMNYK-ID 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + + +QR RAR+         T+        +   T+F GY   +          
Sbjct: 417 KDGFTKEMNDQRERARSARETSNYMGTDIKVLDTISQDIKTEFDGYGKTK---------- 466

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S V  I++  E V     GQK  ++ + TPFYAE GGQ+GDTG  
Sbjct: 467 -------------LTSKVVMIIENDEFVNTIEEGQKGIILAEVTPFYAEMGGQIGDTGEI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +  +  + D +K   G   H+  ++ G L  +  ++L +D + R ++  NH+ATH+++
Sbjct: 514 YNENFKAIVIDTKKNISGKIAHYVEIKEGKLTLDEEIILQVDEKRRDEIRKNHTATHMIN 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            ALS +LGSHV Q GS +T + LRFD +H   +T  E+  +E  VND I +   V T  M
Sbjct: 574 KALSLVLGSHVHQAGSLVTAERLRFDFSHFTAMTEEEIFKVEKLVNDEIEKLTEVNTEEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +   A   GA  +   KY+D VRVV+V     G  SS LCGG H+ + G+I L+ I SE+
Sbjct: 634 SLAVAKEKGAVGIFDDKYSDVVRVVNV-----GDFSSELCGGIHIDNIGKIGLVKITSET 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA+ G  A  ++  + + LK  ++ LK     +V R++ +  + +  +   
Sbjct: 689 GIAAGTRRIEAVVGANAIQYMEEKAQLLKEASALLKTMPNEIVQRIQLLLSDVKDKEKEI 748

Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L   +      S  ++  +   ++ +  +D+  L+ + D ++ K+  G+++L G
Sbjct: 749 EKLKSKLASGEEENILASVKEVKGIKVAAYALKGIDANGLRELADKVRDKVGDGLVVL-G 807

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
              ++K S++ + T++ +++  +   + +  + ++GGGGG GRP MAQ+GG +  K ++A
Sbjct: 808 SVMDEKVSLVAMATKEAVNKGIHCGKIIKEISAIVGGGGG-GRPDMAQAGGKDPAKVEKA 866

Query: 889 IAGVASFL 896
           I  V + +
Sbjct: 867 IGEVLNIV 874


>gi|300858567|ref|YP_003783550.1| alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686021|gb|ADK28943.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206280|gb|ADL10622.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330837|gb|ADL21031.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
          Length = 890

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/924 (34%), Positives = 486/924 (52%), Gaps = 63/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F   F K GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA  +W K  G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGFGLDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+         +    LPK +IDTG+
Sbjct: 176 IYYDRGAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ   N Y+ DL + +I  +E++TG  Y       +++  RVI DH R+   
Sbjct: 235 GVERVACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A LLG     +   +  +   M  +YPE+ + +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQ 402
             I +   +E++ F KTL  G  L +     +     ++L+G  AFKL+DT+G P+D+  
Sbjct: 355 ERILKVALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTL 414

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL  +D   F+  + EQR+RA+A +     G  +   +        T+F GY  
Sbjct: 415 EMAAEAGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                          S V  ++  G  V E  +G +VE++ + +P YA
Sbjct: 474 L-----------------------STESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAGGQ GD G  I     + + DVQK  + ++VH A V +G L    ++   +D Q R  
Sbjct: 511 EAGGQTGDRGTIIMGDTIVNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHS 570

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HSATHL+H AL  +LG    Q GS   P  LRFD  +++ +T+ +L  I+   N  
Sbjct: 571 ARQAHSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQA 630

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  +  V T   + ++A A GA AL G  Y   VRVV +    GG  S  LCGGTHV  +
Sbjct: 631 VDVDWTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHS 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I  + I+ ESS+ +G+RRIEA +G  +  +L  +   ++ +A+ +K    ++  R+  
Sbjct: 687 SQIGPVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIAS 746

Query: 763 IWEEYRKLQLI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816
           + ++ ++ +        A+ + Q         ++  V+ ++H ++E V S +++++   L
Sbjct: 747 LTQKLKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDL 806

Query: 817 QKKIQS--GIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           + ++     +I L+      K   ++  T+  +     A DLA++    +  G GGG+P 
Sbjct: 807 KSRLGDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDLAKVLGSYI-QGNGGGKPD 865

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           MAQ    +    D  +A +   ++
Sbjct: 866 MAQGSARDIAGFDSGVAAIKDEIR 889


>gi|295839933|ref|ZP_06826866.1| alanine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827712|gb|EDY43697.2| alanine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 866

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/902 (36%), Positives = 498/902 (55%), Gaps = 62/902 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH+++PS+SLI  +DPTL+   +GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLRFFEERGHKVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F L+  RL+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GFGLEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+       + +    LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y     + V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVRNMYETDTLRVVIDKATELTGVAYGAAVASDVSLRVVSDHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  +E
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRVE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L G+ AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGEKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A S    +G  +   +  + +  GAT F GY  L G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------EARIVGLLVDGVPAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GDTG   + +G  ++I DVQK   G+ VH   V+ G +  +  +   ID   RR ++
Sbjct: 511 GQIGDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQTRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      + +A +  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + + V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 REMDVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVSQLQELVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    + + +  L           DV+  + +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIERFRAEKVLQAAAGLAAGAKDVHGTALVTGQVPDGTGADDLRRLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      ++ L  ++  +  +V+          F A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIPGDRPAVVALFAVTGGRPVTVVATNEAARERGFKAGDLVRTAAKALGGGGG-GKPDVA 864

Query: 876 QS 877
           Q 
Sbjct: 865 QG 866


>gi|225017450|ref|ZP_03706642.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum
           DSM 5476]
 gi|224949860|gb|EEG31069.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum
           DSM 5476]
          Length = 879

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/912 (35%), Positives = 514/912 (56%), Gaps = 54/912 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + ++ +R  FL FF+  GH  L S  LIP  D +L+  NSGM P K  F GQE P  + V
Sbjct: 4   TGLNELREKFLSFFESKGHTRLKSYPLIPQGDNSLLLINSGMAPMKKFFLGQEVPPNKRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D++NVG+T RH T+FEMLGNFSFG YFK  A + AW+ +TKE +L 
Sbjct: 64  TTCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATEWAWEFVTKELELP 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R+++++Y +D+EAF++W K  G+    I+R+   DNFW +   GPCGPCSE++FD+GE
Sbjct: 120 IDRIWVSIYQDDDEAFEIWTKERGVDPSHIVRMGKEDNFWEIGS-GPCGPCSELYFDRGE 178

Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      E +R++E WNLVF QF    +     +   +IDTGMGLER+A ++QE
Sbjct: 179 DKGCGSPDCRVGCECDRFVEFWNLVFSQFNGDGEGHYEPMEHPNIDTGMGLERLACIMQE 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297
             N +++D  ++++    ++ G+KY+ +  V+   RVI DH+RS++F+I DG++P+NEGR
Sbjct: 239 VDNLFEVDTVQNIMNHISEIAGVKYKQDPKVDVCLRVITDHIRSTTFMIGDGVIPSNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA    + LG  +P +  ++  +  E  SAYPEL +    I++ +R+E+E 
Sbjct: 299 GYVLRRLLRRAARNGKQLGIRDPFLYKVVDTVIAENKSAYPELEENADYIKKIVRAEEEN 358

Query: 358 FGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           F KT+D+G+ LL+ ++  +  +   +IL+G+ AFKLYDT+G P+D++++I+  +G+  +D
Sbjct: 359 FAKTIDKGMELLNNIIDSIDSNIESKILSGEQAFKLYDTYGFPIDLIKEIISEQGI-DVD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + + EQ++RAR   L   +       + + ++   T+F+GY+             
Sbjct: 418 EARFRELMNEQKTRAREAKLNSDTVGWSSENYHITDE--PTEFVGYETYE---------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  I+ +    EEA  G +V +VFD+TPFYAE+GGQ+GD G  
Sbjct: 466 -------------CDAKLLHILTEDGEAEEAKEGDRVNLVFDRTPFYAESGGQVGDRGVF 512

Query: 535 IGDGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
           +     + I D QK   G   +H  +V  G ++  ++  L+ID   R   + NH+A HLL
Sbjct: 513 VIGNSVVNILDCQKDPSGQHSLHLGLVMAGSIQKGVTGHLSIDGLKRDATARNHTAAHLL 572

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             AL   LGSHV Q G  +  + LRFD  H + +T  EL ++E  VN  I + + V T  
Sbjct: 573 QKALRDELGSHVHQAGQLVDSERLRFDFNHFEAMTPQELLNVEQAVNAKILEAVKVTTSE 632

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A A GA AL G KY D VRVV     D   +S  LCGGTHV +T ++ L  I+SE
Sbjct: 633 MDIESARAQGAMALFGEKYGDIVRVV-----DADGYSVELCGGTHVDNTSKLGLFKIISE 687

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKL-- 770
           SS  AGIRRIEA TG      +   +  + +    LKV +   +  R + + +E +    
Sbjct: 688 SSAAAGIRRIEATTGTGVLGLMQEGNLLIAAACGALKVTNPHELPARCKALNDELKAKDR 747

Query: 771 ---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              +L       Q+     +  ++  V  +S   + +  + L+++ D +++   +  + +
Sbjct: 748 KIDELNQKIASTQMQNVFDTATEVNGVRVISASFNGMTVQALRAMGDRIKENPLN--VAV 805

Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +    + K +++ V  ++ + R  +A ++ R  A + GG GG GRP  A +G     + D
Sbjct: 806 LANIADGKGNLIAVCGKEAVARGAHAGNIVREIAALAGGKGG-GRPDSAMAGVTEIFQID 864

Query: 887 QAIAGVASFLKK 898
           +A+  + S ++K
Sbjct: 865 EALTQLTSVVQK 876


>gi|224542880|ref|ZP_03683419.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524210|gb|EEF93315.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM
           15897]
          Length = 868

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/910 (36%), Positives = 501/910 (55%), Gaps = 62/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +  R  FLE+F+K GH + PS+SLIP +DPTL++ N+G+   K  F G EKP    +T
Sbjct: 5   TGNQTRALFLEYFKKQGHMVEPSASLIPHDDPTLLWINAGVAALKKYFDGTEKPACNRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKTEAIHFAWEFLTGEEWLAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITVY +DE+A+ +W K  G+    I++  T DNFW +   GP GP SEIF+D+G
Sbjct: 121 DKDKLYITVYTDDEDAYNVWTKECGVDPSHILK--TADNFWEIGA-GPGGPDSEIFYDRG 177

Query: 181 E-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E      I   L     E +RY+EIWN+VF QF+      +++   LP  +IDTGMGLER
Sbjct: 178 EKYDPDHIGERLFFEEMENDRYVEIWNIVFSQFDCDPTIDRKDYKELPHKNIDTGMGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           + +++QE   N+D DLF  +I A+E++  +KY   + + +RVI DH+R+ +F ++DG + 
Sbjct: 238 ITSIIQEGETNFDTDLFLPIIHATEELADVKY-AEDKMAYRVIADHIRTVTFALSDGAMF 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
              GRGYVLRRI+RRA+ Y + +G  +P +  L+  +   M   Y  L +    ++E ++
Sbjct: 297 DRAGRGYVLRRILRRAVRYGKNIGIDKPFLYTLVDVVVDNMKEFYDYLPEKAEFVKEAVK 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+  F KTL +G   +  V++H   D++++G  AF LYDT+G PL++  +I    G   
Sbjct: 357 KEEVAFHKTLSQGEKKIKDVIAH-SDDKMIDGSTAFMLYDTYGFPLELTIEIAEESGFT- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++ Q+ RARA      S  ++KI   L +    + F+ YD           
Sbjct: 415 VDSEGFQVEMKAQQDRARAARGERESMASQKI--DLMDFTTPSTFV-YDT---------- 461

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            + V  + + GE V+E     + E++ + T FYAE GGQ  DTG
Sbjct: 462 -------------APCKTTVIGLFKDGEKVDELT--DEGEIIVETTNFYAEMGGQCADTG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            A  D    ++T+V K   G  +H+  +  G +    ++ LT+D   R  +  NH+ATHL
Sbjct: 507 SAHSDQFDAEVTNVLKAPNGQHLHYIKLTSGSVHVGDTVELTVDTARRTLIENNHTATHL 566

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LGSHV Q GS +  + LRFD TH   +T  EL ++ED VN+ I + + V  +
Sbjct: 567 LDAALKNVLGSHVGQAGSYLDENRLRFDFTHPSKMTKEELTAVEDMVNEYIFKGVDVDVK 626

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M +E+AI++GA AL   KY D V          G  S  LCGGTHVS+T +I L  I  
Sbjct: 627 EMPKEEAISAGATALFDEKYGDVV-----RVVRVGDFSVELCGGTHVSNTAKIGLFKIEM 681

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE----IWEEY 767
           E+S+ +G+RRIEA+T  RA   L   +E L+ + + LK +    +V + E     +    
Sbjct: 682 ETSVGSGVRRIEAVTNVRAYKALRKSEETLEEVGTVLKANDLNKIVEKAESTMTTLNAMK 741

Query: 768 RKLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++++ + +K   L+   +     ++  V F+   + + D+   K +    + +++SGI++
Sbjct: 742 KEIETLTSKLNALEAKNQASQVEEVNGVKFLYTHVEK-DNAAAKQMAFDFRDQLESGIVV 800

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +     E K S  + +T+DL + + A  L +   +VL  G GGG+P  AQ G P  +K D
Sbjct: 801 VTSTF-EGKNSYFVGITKDLTNTYKAGVLVKAMNEVL-DGRGGGKPDFAQGGAPTLDKID 858

Query: 887 QAIAGVASFL 896
           +AI  V S L
Sbjct: 859 EAITAVKSKL 868


>gi|117928537|ref|YP_873088.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|205829965|sp|A0LUJ2|SYA_ACIC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117649000|gb|ABK53102.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
          Length = 886

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/905 (36%), Positives = 484/905 (53%), Gaps = 62/905 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L FF+K  H ++PS+ L+  +DP L+F  +GM PFK  F G     +   
Sbjct: 1   MESAEIARRWLAFFEKRDHVVVPSTPLVA-DDPELLFVVAGMQPFKPYFRGDAPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQK +R      D+D VG+T RH TFF M GNFSFG YFKE AI LAW+LLT      
Sbjct: 60  TSVQKVLRT----PDIDEVGKTTRHATFFHMCGNFSFGDYFKETAIPLAWELLTTPVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +     RL++TVY +D+EA  +W ++ GL  D+I R    DNFWSM   GPCGPCSEI+
Sbjct: 116 GYGFAPDRLWVTVYTDDDEAADIWHRVVGLPVDRIQRRGMADNFWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQ------ERFILPKMSIDTGMG 229
           +D+G     GG P ++EE  RY+E+WNLVFMQ+E+              LP  +IDTGMG
Sbjct: 176 YDRGPEFGVGGGPVANEE--RYLEVWNLVFMQYERGPGGAKDNYPILGELPAKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
           LERMA +LQ   N Y+ID  + ++  + ++TG +Y   G N V  R++ DH+R+ + L+ 
Sbjct: 234 LERMAAILQGVDNIYEIDTTRPILDKAAELTGQRYGSGGQNDVRLRMVADHIRAITMLVN 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG++P+NE RGYVLRR+MRR +   RLLG  EP M  L+          YPEL +    I
Sbjct: 294 DGVVPSNEERGYVLRRLMRRVVRAMRLLGAREPTMHELVATAIAVFTPQYPELSRNAERI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
                 E+  F  TL  G    +  +   G   +L+G+ AF L+DT+G P+D+  ++   
Sbjct: 354 FAVADGEEASFFSTLAAGTARFEAAVREAG-GGVLSGEQAFVLHDTYGFPIDLTLEMAAE 412

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQFIGYDLLRG 465
           +G+  +D   F   + EQR RA+  +    +G  ++  +    +      +F GY    G
Sbjct: 413 QGVT-VDEEGFRALMAEQRRRAKEDAERRKTGAADRAAYRAAAELLGRPVEFTGYTERSG 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   ++V+ ++  G  V  A +GQ+VEVV D+TPFYAE G
Sbjct: 472 -----------------------EAVVRGLLVDGAAVPAAHAGQRVEVVLDRTPFYAEGG 508

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL D G       R+ + DVQ+   G+ VH   V  G +    +++  ID   R  +S 
Sbjct: 509 GQLPDHGVLEFAAGRIDVDDVQQPLPGLIVHRGRVADGEITVGETVLARIDVDRRWAISR 568

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATH++H A    LG   +Q GS   P   RFD T+   +  + L  +E+ VND++  
Sbjct: 569 SHTATHMVHKAFREFLGDTAAQAGSENAPGRFRFDFTNPSAVPPSVLGEVEERVNDLLLH 628

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +L V  +IM +++AIASGA A+ G KY D+VRV+S+     G  S  LCGGTHV  TG +
Sbjct: 629 DLEVTAQIMRQQEAIASGAIAMFGEKYGDQVRVISI-----GDWSRELCGGTHVPHTGHL 683

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            ++ IVSESSI AG+RRIEA+ G  A  +L  +   +  LA  LK     +  R+  +  
Sbjct: 684 GVIKIVSESSIGAGVRRIEALVGLDAYRYLAREAVLVSQLAEQLKAPADELPDRIAGMLA 743

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHII-----SEVDSKELKSVMDALQK 818
             R  +    K +    + +         DV  ++ +        VD+  L+ +   L++
Sbjct: 744 RLRDAEKELEKLRQARLLAEAPRLAAARVDVGGLAVVAARVDGDGVDADGLRLLATDLRQ 803

Query: 819 KI-QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++  S +++L G++  +   V  V +E L     A +L  ++AK LGGGGG GRP  AQ 
Sbjct: 804 RLGGSAVVVLAGVAGGRPVVVAAVGSEALARGVKAGELVGVAAKRLGGGGG-GRPDFAQG 862

Query: 878 GGPNG 882
           GG N 
Sbjct: 863 GGTNP 867


>gi|328881150|emb|CCA54389.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 889

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/921 (36%), Positives = 504/921 (54%), Gaps = 62/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           ++VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  SSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTPVEHG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY ED+EA ++W+ + G+ A++I R+   DN+WSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYQEDDEAEQIWRDVVGVPAERIQRLGKKDNYWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+              LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGSGKDDFPILGELPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  +  +TG+ Y    ++ V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLQVVIDKATALTGVAYGKAHDSDVSLRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RLLG + P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAVRNMRLLGASGPVVGELVDTVINTMGEQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  ++        +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHADMTSYREIADSNGATEFTGYTNTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGLLVNGVSSPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+ D G   +  G  +++ DVQ+   G+ VH   V+ G +    +   TID + RR ++
Sbjct: 511 GQIADQGRIKLHSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGATAYATIDVRRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      +  A L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPNAVPGAVLTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M  ++A   GA A  G KY ++VRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELEVHAEVMPIDEAKRQGAIAEFGEKYGEKVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISAML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +  L           D+  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLVDSAQDIRGVALVTGQVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I  G   ++ +  +   K   +I   E   +R   A +L R +AK LGGGGG G+P +A
Sbjct: 806 RISGGRPAVVALFTTANGKPLTVIATNEAARERGLKAGELVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N     +AIA V   +
Sbjct: 865 QGGGQNPEAVGEAIAAVERLV 885


>gi|258645603|ref|ZP_05733072.1| alanine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402961|gb|EEW96508.1| alanine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 868

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/905 (36%), Positives = 498/905 (55%), Gaps = 55/905 (6%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           + IR  +L FF+ K  H  L S  LIP +DP+L+   +GM P K  FTG+ +P    VTT
Sbjct: 4   NDIREAYLSFFETKKEHLRLKSFPLIPKDDPSLLLIGAGMAPLKPYFTGKVEPPCHRVTT 63

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVGRT RHHTFFEMLGNFSFG YFK+ AI  AW+ LT+   L+  
Sbjct: 64  SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWEFLTEVIKLESS 119

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY+T+Y +D E++  W  + GL    I  ++  DNFW + E GPCGP SEIF+DQGE  
Sbjct: 120 RLYVTIYPDDRESYDYWHDMIGLPESHIYPLS--DNFWEIGE-GPCGPDSEIFYDQGEEF 176

Query: 184 PGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +G+R++EIWNLVF QF+QQ       L K +IDTG GLER++ VLQ+K N
Sbjct: 177 GTDPENQMGGDGDRFLEIWNLVFSQFDQQKDGSYRPLDKKNIDTGAGLERLSAVLQKKKN 236

Query: 243 NYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ DLF  +IQ +  + G+ Y     + V  +VI DH R+ + +IADGILP+NEGRGYV
Sbjct: 237 NFETDLFFPIIQEAAGLAGVPYGRSTESDVALKVISDHTRAITNMIADGILPSNEGRGYV 296

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RRA+ Y +L+G  +  +  ++  +   M  AYPEL++ +  I++    E+ RF  
Sbjct: 297 LRRVLRRAVRYGKLIGIDDAFLGRMIDVVVKMMKPAYPELMEKQAFIKKVAGVEENRFHA 356

Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL+ G+ LL  +L    K +  IL GD  FKLYDT+G P ++ ++I   +G+  ID   F
Sbjct: 357 TLNAGMDLLAEMLEETLKKQRRILTGDRVFKLYDTYGFPWELTEEIAKEQGIE-IDKDGF 415

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A+ EQ+ RARA    + +         LK +   T+                      
Sbjct: 416 AAAMAEQKERARAARTKVSARIATPDTTKLKSESMTTE---------------------- 453

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + +  + + G+ V+ A  G+ + V+    PF+AE GGQ+GD+G   G+ 
Sbjct: 454 ------DTDGDTEILLLGKDGQAVQSAADGENITVILKNNPFHAEGGGQIGDSGVLEGNS 507

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + I D +K  +GI      V  G++ T  ++   +D + R  ++ NH+ THLL  AL 
Sbjct: 508 GIISIEDTKKLPDGIVYCIGTVTEGVISTGETVKTVVDRERREDIARNHTGTHLLQAALR 567

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LGS V+Q GS + P+ LRFD T  + +T  ++  +E  VN+ I ++  +    M    
Sbjct: 568 RVLGSQVNQAGSLVLPEKLRFDFTWPEAVTDKQIAEVERIVNEQIWKSTTLDIDEMPIAK 627

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A   GA AL G KY + VRVV V        S+ LCGG+HV +TGEI    I+SES I +
Sbjct: 628 AKEMGAIALFGEKYGNIVRVVRVP-----DFSTELCGGSHVFNTGEIGCFRIISESGIGS 682

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEAITG+ A   ++   + L+  A+ LKV    + G++E+     ++ +    + K
Sbjct: 683 GIRRIEAITGKAAYESMLADRKLLRESAALLKVKVEEIPGKIEKNLAALKEAEREIERFK 742

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            Q   + L     +  +   ++F   I+   +  EL+   D ++ K   G  +L   + E
Sbjct: 743 NQQTKDALGNLLKNVREKNGISFFGAIVPAANMDELRKAADIVKGKFPRGAFILGAAAGE 802

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +++ + +E+ +    +   +   +AK+ GGGGG G+P +AQ+GG N ++   AI   
Sbjct: 803 -KVNLVGMASEEAVKTGIHMGKVVSAAAKICGGGGG-GKPAVAQAGGKNISELQNAIDEG 860

Query: 893 ASFLK 897
              ++
Sbjct: 861 VRIIE 865


>gi|312139552|ref|YP_004006888.1| alanine-tRNA ligase alas [Rhodococcus equi 103S]
 gi|311888891|emb|CBH48204.1| alanine-tRNA ligase AlaS [Rhodococcus equi 103S]
          Length = 890

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/920 (34%), Positives = 487/920 (52%), Gaps = 58/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV FK  F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TVY +D+EA  +WK+ +G+  ++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+       + +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G  Y  +    V  RVI DH R++  LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YPEL      I 
Sbjct: 295 GVNPGNEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIV 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F +T+  G  + +     +     ++  G+ AF L+DT+G P+D+  ++  
Sbjct: 355 GVAVGEETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   + EQR RA+  +       T+   +      GAT+F G++ L   
Sbjct: 415 EAGLS-VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALISNGVRVPAATAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G    +G+R+++ DVQK A+ ++VH   V  G +     +++ +D + R+  +  
Sbjct: 511 QIADIGTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQITEGDVVLVQVDPEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD      ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAAN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A   GA AL G  Y D VRVV +    GG  S  LCGGTHV ++ +I 
Sbjct: 631 HAVNTFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V GRVE + E 
Sbjct: 687 PVTLLGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +      K    +          H+  +V  ++      V   +L+ ++  ++ + 
Sbjct: 747 LKAAEKELEATKAAAVLASAGTFVDKAHRFGEVLLVAEQAPDGVAGNDLRGLVSDIRGRF 806

Query: 821 Q-SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ++++  + + K   ++  T+   D    A +L       +GG GG G+  MAQ  
Sbjct: 807 GTQPAVVVLLGNADGKVPFVVATTKAAQDLGIKAGELVSSFGPQIGGRGG-GKADMAQGS 865

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G + +    A+ G  + + +
Sbjct: 866 GSDVSGIPAALEGARARVAE 885


>gi|319935502|ref|ZP_08009937.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809533|gb|EFW05950.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 869

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/913 (35%), Positives = 499/913 (54%), Gaps = 63/913 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + +R  FL++F+  GH + P +SLIP NDPTL++ N+G+   K  F G E+P  
Sbjct: 1   MKQLTGNQVRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEQPAC 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +
Sbjct: 61  HRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEDAIPFAWEFLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +LY+TVY +D++A+++W ++  +    I++  T+ NFW + E GP GP SEIF
Sbjct: 117 WIGFDKEKLYVTVYTDDDDAYRIWTEVCHVDPSHILK--TDGNFWEIGE-GPGGPDSEIF 173

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           +D+G        G        E +RYIEIWN+VF QF+      ++E   LP+ +IDTGM
Sbjct: 174 YDRGVEYDPDGLGEKLFFEELENDRYIEIWNVVFSQFDCNPTIDRKEYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++Q    N+D D F  +I A+E++T ++YE N  + +RVI DH+R+ +F ++D
Sbjct: 234 GLERLVSIIQGGETNFDTDFFLPIIHATEEMTNVRYEDNK-MAYRVIADHIRTVTFALSD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G L  N GRGYVLRRI+RRA+ Y + +G     M  L+  +   M   Y  L      + 
Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKKIGIDHSFMYKLVYVVADIMKEFYDYLPAKADYVS 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             ++ E+E F KTL  G  LL+ +L     D+ L+G  AFKLYDT+G PL++  +I    
Sbjct: 353 GLVKKEEEAFHKTLSNGEKLLNQMLKKTI-DQQLDGKDAFKLYDTYGFPLELTVEIAEET 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G   +D   F   ++ Q+ RAR       S +++K    L      +QF+          
Sbjct: 412 GFT-VDEAGFKAEMKAQQVRARNARGDNESMSSQK--PDLMAFDTPSQFV---------- 458

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                            + +++ V A    G   +E  +  + E++ DQT FYAE GGQ 
Sbjct: 459 --------------YDHSPITAKVIATFIDGVKCDEITT--QGEIILDQTTFYAEMGGQC 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    +   L +T V +      +H   ++ G ++    L+L +D   R  +  NH+
Sbjct: 503 ADTGTMSNETTLLDVTYVSRAPRLQHLHVIKIKNGSVKVGDELILKVDAHKRALIQNNHT 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL  AL T+LG HVSQ+GS +  + LRFD TH + +T  E++ +ED VN+ I   L 
Sbjct: 563 ATHLLQKALKTVLGEHVSQSGSYVDAERLRFDFTHPQKMTDEEIRKVEDQVNEQIFNGLN 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    M++++A+ SGA AL   KY D+VRVVSV     G +S  LCGG HVS++ +I L 
Sbjct: 623 VQIEFMSKDEAMHSGAMALFDEKYGDQVRVVSV-----GDYSKELCGGCHVSNSAQIALF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            I SE S+ +GIRRIEA+T Q+A   +   +E +++++   K+  +  +V +V +  +E 
Sbjct: 678 KIESEESVGSGIRRIEAVTAQKAYQSMKKSEETIQTISELFKLKNRNEIVEKVTQFIDET 737

Query: 768 RKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQKKIQSG 823
            +++    +   KL           I ++N +  +      D+   K +   L+ ++ +G
Sbjct: 738 HEVKKERDQYLDKLNSIEAKEKSKNIEEINGVQFLYVSESKDASIAKQMTFELRDQLTNG 797

Query: 824 IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           +++LV    E K S  + +T  ++   + A DL ++  + + GG GGG+P  AQ G P+ 
Sbjct: 798 VVVLVS-EYEGKTSYFVGLTASMVKNGYKAGDLVKMINE-VTGGRGGGKPDFAQGGCPSQ 855

Query: 883 NKADQAIAGVASF 895
              + AI  + S 
Sbjct: 856 EHINDAIKQIKSV 868


>gi|325298627|ref|YP_004258544.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318180|gb|ADY36071.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 872

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/918 (35%), Positives = 496/918 (54%), Gaps = 72/918 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F++FF+  GH+++PS+ ++  +DPTLMFTN+GM  FK+I  G     Y+ 
Sbjct: 1   MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+  I  AW+ L     +
Sbjct: 61  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAWEYLVDVLKI 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D   LY TV++         D EA   W++   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPSILYATVFEGSPEEGLERDNEAAGYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++    IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ K +NYD D+F+ +I+    +TG+ Y  +    V  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKKSNYDTDVFQPIIKVIGDLTGLTYGKDPKVDVAMRVVADHIRTIAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+P L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMFKLVPVLIENMGQAYPELKAQQP 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD V+  +   +   ++G  AF LYDT G PLD+ + 
Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKVMNDAKAAQKTEISGVDAFTLYDTFGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  ++   FN  +++Q+ RAR       +      W  L+E  G T F+GYD  
Sbjct: 419 ILRENGMT-VNEEEFNIEMQKQKQRARNA-----AAIETGDWVILEE--GETHFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V  +TPFYAE
Sbjct: 471 EYETRILRYRQIKQKNQTL----------------------------YQIVLSETPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GDTG  + +   ++I D +K+   + +H A  ++     +  ++  +D   R   
Sbjct: 503 SGGQVGDTGVLVSEFETIEIIDTKKE-NNLPIHIA--KQLPEHLDAPMMACVDTDKRAAC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHS THLL  AL  +LG+HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I
Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQLREVEHLVNAKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +N+P+     +  E A   GA AL G KY D VRVV          S   CGGTHVS+T
Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFGS------SIEFCGGTHVSAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SESS+ AG+RRIEAITG +    +    + +  L +    +  ++   + +
Sbjct: 674 GKIGMVKILSESSVAAGVRRIEAITGAKVEEMMDILQDTINDLKALFNNAP-DLRAAISK 732

Query: 763 IWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQK 818
             +E    K Q+    ++ + + +        +++ +  I + +    + +K++   L+ 
Sbjct: 733 YVDENAGLKKQMEEFMKEREASAKARLIESAKEIHGVKVIKAMLPMRPEAIKNIAFQLKG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +    + +++G   + K  + +++++D +    NA  L R +AK++ GG GGG+PH A +
Sbjct: 793 QFPENLFVVIGSIFDDKPMLTVIMSDDQVKAGLNAGQLVREAAKLIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    AI  V   
Sbjct: 852 GGKNADGLSAAIDKVLEL 869


>gi|325672564|ref|ZP_08152260.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556441|gb|EGD26107.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 890

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/920 (34%), Positives = 487/920 (52%), Gaps = 58/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV FK  F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++TVY +D+EA  +WK+ +G+  ++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+       + +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G  Y  +    V  RVI DH R++  LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YPEL      I 
Sbjct: 295 GVNPGNEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIV 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F +T+  G  + +     +     ++  G+ AF L+DT+G P+D+  ++  
Sbjct: 355 GVAVGEETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   + EQR RA+  +       T+   +      GAT+F G++ L   
Sbjct: 415 EAGLS-VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALISNGVRVPTATAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G    +G+R+++ DVQK A+ ++VH   V  G +     +++ +D + R+  +  
Sbjct: 511 QIADIGTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQITEGDVVLVQVDPEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD      ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAAN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A   GA AL G  Y D VRVV +    GG  S  LCGGTHV ++ +I 
Sbjct: 631 HAVNTFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RR+EA  G  +  +L  +   L  +AS LKV    V GRVE + E 
Sbjct: 687 PVTLLGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +      K    +          H+  +V  ++      V   +L+ ++  ++ + 
Sbjct: 747 LKAAEKELEATKAAAVLASAGTFVDKAHRFGEVLLVAEQAPDGVAGNDLRGLVSDIRGRF 806

Query: 821 Q-SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ++++  + + K   ++  T+   D    A +L       +GG GG G+  MAQ  
Sbjct: 807 GTQPAVVVLLGNADGKVPFVVATTKAAQDLGIKAGELVSSFGPQIGGRGG-GKADMAQGS 865

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G + +    A+ GV   + +
Sbjct: 866 GSDVSGIPAALEGVRGRVAE 885


>gi|242310739|ref|ZP_04809894.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523137|gb|EEQ63003.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 859

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/898 (36%), Positives = 508/898 (56%), Gaps = 60/898 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            +R  FLEFF+  GH++  S  L+P +DP+L+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 11  DVRALFLEFFESKGHKVYESMPLVP-DDPSLLFTNAGMVQFKDIFTGKIPIPNPNIATSA 69

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI  AW+ +T+     +  
Sbjct: 70  QLCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKDAIAYAWEFVTEVLGFSKEA 129

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC-I 183
           LY+TV++ D+EAF+LW K   +   +I R+   DNFW M +TGPCGPCSEIF DQGE   
Sbjct: 130 LYVTVHENDDEAFELWTK--HIDPSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGEENF 187

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  +L+ K +N
Sbjct: 188 NGPEDYFGGDGDRFLEIWNLVFMQYERDISGNLKPLPKPSIDTGMGLERVMALLEGKKSN 247

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  LI   EQ+ G KY   +  + RVI DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 248 FDSSLFMPLIAKVEQIVGQKYIYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRR 307

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG  +P +  ++ ++C  MG+ Y  L + +  I+   ++E+ERF +T++
Sbjct: 308 ILRRAIRHGYLLGMRKPFVYEVIDSVCENMGNHYRYLREKQEAIKMQCKAEEERFFETIE 367

Query: 364 RGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            G+ L +  L +L K++   + +G+VAF+LYDT+G PLD+ QD+L   G  G+D+ SF  
Sbjct: 368 NGMNLFNKELENLKKEKPNQLFSGEVAFRLYDTYGFPLDLTQDMLRENGF-GVDMDSFEV 426

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            +++Q+ +A+A+  G G    E  + +L  K+G  +F+GY  ++                
Sbjct: 427 CMQKQKEQAKANWKGSGDNIKEGDFKTLISKFGENEFVGYTTMQ---------------- 470

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    S + A++ +       + G+   V+ D+TPFY ++GG +GD G  +    +
Sbjct: 471 -------FKSKISALLDENFKEVAKLQGE-GYVMLDKTPFYPQSGGPIGDKGVILDSNSK 522

Query: 541 L--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
           +  ++ D +K           +E   L     +V  +  Q R +++ +HSATHLLH AL 
Sbjct: 523 VLAEVMDTRKYFGLNISQIKALES--LVVGQEVVAQV-SQERLEIAKHHSATHLLHKALR 579

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H++Q GS +  + LRFD +H K ++  E++ IE  VN+ I  + P +   M+ + 
Sbjct: 580 EVLGEHIAQAGSLVESNRLRFDFSHPKALSYEEIEKIEILVNEKICLSNPQICETMDIDS 639

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A GA AL G KY   VRV++         S  LCGG HV +T  I   YI+ ES + +
Sbjct: 640 AKAKGAMALFGEKYGKNVRVITFG------DSIELCGGIHVENTANIGSFYIIKESGVSS 693

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+RRIEA+ G+ A  +      ++      LK    +++  +++  E+ + L+     + 
Sbjct: 694 GVRRIEAVCGKAAYEYGKKALVEIAKAKEELKAQ--DLLEGIKKQKEQIKSLKSQSTTKA 751

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              N+      +I D+N +  II  VD  E+K+++D  + K +   I+L+    + +  +
Sbjct: 752 TTQNL------QIEDINGVCVIIQSVDDAEMKTLVDNAKNKYEKVAILLI----DTQGKI 801

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +  V         A    +  A+V+ GG GGGR   A +GG +  K  +A+      +
Sbjct: 802 VAGVKNAT---IKAGSWVKEVAQVM-GGNGGGRDDFATAGGKDTQKIKEALQRAREIV 855


>gi|282880930|ref|ZP_06289621.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305153|gb|EFA97222.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 875

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/919 (36%), Positives = 507/919 (55%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH ++ S+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 3   MMTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 63  RADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVGVLHL 122

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D EA K W+K   L AD II    +DNFW M +TGPCGPC
Sbjct: 123 DPKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPC 180

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + +     LPG    +++  + IEIWN+VFMQF ++       L    IDTGM
Sbjct: 181 SEIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGM 240

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+  +LQ K +NYD D+F+  I   E+++G KY     V+   RV+ DHLR+ +F I
Sbjct: 241 GFERLVRMLQGKNSNYDTDIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSI 300

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL+  + 
Sbjct: 301 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRE 360

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
           LI + ++ E++ F +TL++G+ LL   +  L K     ++G+ AF+L+DT+G PLD+ + 
Sbjct: 361 LIGKVMKEEEDSFLRTLEKGINLLSNAMDELKKAGKTQIDGEQAFRLFDTYGFPLDLTEL 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G + +D   F+  +++Q+ RAR  +           W  +++  G  QF+GYD  
Sbjct: 421 ICREHGFS-VDEQQFHAEMQKQKDRARNAAQ-----VENSDWVEIRQ--GEQQFVGYDYT 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                + + RKV  +K                                EV+ D TPFY E
Sbjct: 473 EYECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGE 504

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G  + +   + + D  K+     +H  I+++     E   +  ++   R   
Sbjct: 505 MGGQVGDQGVLVSEHETVDVIDT-KRENNQSIH--IIKQLPQHPEADFMACVETDKRDAC 561

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VND+I
Sbjct: 562 AANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNDLI 621

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q++P+        E+A   GA AL G KY D+VRVV          S   CGG H  ST
Sbjct: 622 RQDIPLDEHRDTPIEEAKEMGAVALFGEKYGDKVRVVRFGP------SCEFCGGIHAKST 675

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I L  I+SESS+ AG+RR EAITG++    +   ++ +K++ S    +  ++ G +E+
Sbjct: 676 GRIGLFKIISESSVAAGVRRFEAITGRQCEEAMYAIEDTVKAIRSLFN-NAKDLKGVIEK 734

Query: 763 IWEEYRKLQLIHAKRKLQLNV--EDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             +E+  ++    + + Q     +D    +   VN ++ I  +  +D    K ++  +++
Sbjct: 735 YMDEHATMRKEIEQFQAQAVQRTKDELIKRAETVNGVTVIKAVLPIDGNAAKDLVFKIRE 794

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I S ++ ++G + ++K  + +++++D++     NA  + R +AK++ GG GGG+PH A 
Sbjct: 795 AIPSHLLCVIGSTAQQKPLLSVMLSDDMVKEQGLNAGQMVREAAKLIQGG-GGGQPHFAS 853

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+  V   
Sbjct: 854 AGGKNVDGISAAVDKVIEL 872


>gi|311747311|ref|ZP_07721096.1| alanine--tRNA ligase [Algoriphagus sp. PR1]
 gi|311302637|gb|EAZ83190.2| alanine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 874

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/919 (36%), Positives = 497/919 (54%), Gaps = 72/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+TF+EFFQ   H+ +PSS ++  NDPTLMFTN+GM  FK+ F G E P +  V
Sbjct: 1   MEAKKIRSTFIEFFQSKQHQYVPSSPIVVKNDPTLMFTNAGMNQFKDAFLGNETPKFARV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT  F L 
Sbjct: 61  ANSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTVVFKLP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY++V++ D+        EA+  WKKI  +  D+II  +  DNFW M +TGPCGPCS
Sbjct: 121 KERLYVSVFEGDQGDGLSLDTEAYNFWKKI--VPEDRIIMGSKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + + E+ IEIWNLVFMQ+ + +      LP   +DTGMG
Sbjct: 179 EIHIDLRPEAELAEIPGKDLVNNDHEQVIEIWNLVFMQYNRLSDGSLKELPAKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   +Q+K++NYD DLF   + A  + +G  Y  +    +  RVIVDH+R+ SF IA
Sbjct: 239 FERLVRAIQQKSSNYDTDLFAPFLNAIAKKSGKVYGNDEQTDIAFRVIVDHIRAISFTIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y     G+ EP +  L   +    G  +PE+ Q +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYGYTFFGFQEPFLYELTSLIAEHFGDVFPEVRQQQEF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I + +  E+  F +TL+ GL +LD + + L    D ++ G  AF+LYDT G PLD+   I
Sbjct: 359 ISKVIYEEEASFLRTLENGLKILDQIKAELQEKNDTVIPGKTAFELYDTFGFPLDLTSLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL+ +D   F   +E+Q++R+RA S           W  + E  G  +FIGYD L 
Sbjct: 419 ARENGLS-LDEKGFLAEMEKQKTRSRAASESETGD-----WVLVHEDEGV-EFIGYDFLE 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + R V  +K                            G+K +VV D+TPFYAE+
Sbjct: 472 SFSNIIKYRVVKEKK----------------------------GEKYQVVLDKTPFYAES 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  I D  ++++ D +K+ + I     +V++     E+     +D + R    
Sbjct: 504 GGQVGDKGWLISDNEKIRVIDTKKENDLIIH---LVDKLPSNPEVKFSAEVDRKGRALSM 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  AL  +LG H+ Q GS ++PD LRFD +H   +T  E+  +E+ VN  I 
Sbjct: 561 NNHTATHLLQSALKEVLGDHIQQRGSLVSPDLLRFDFSHFGKLTEEEITKVEEIVNTKIR 620

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P V  R +  E+A + GA AL G KY D VRV++ +       S  LCGGTHV  T 
Sbjct: 621 ENIPLVEKRNVPIEEAKSMGATALFGEKYGDFVRVITFDP----DFSVELCGGTHVPYTS 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I SE S  +G+RRIEAIT + A  +L GQ+  +K +   LK    ++   +E +
Sbjct: 677 QIGLFKITSEGSSASGVRRIEAITAKAAEDYLRGQENLVKEIQELLK-HPKDLKKSIEAL 735

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQK 818
            +E   L+       + K      +L    +A   +N +   +   ++  LK +   L+ 
Sbjct: 736 IQEKNDLKKEIELLYQEKAGAVKGELLKEFVAGEGINTLIAKVDLPNADSLKKLGYELKN 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++++  I+L   + + K  + +++ E+L+     NA  + R  AK + GGGG G+P  A 
Sbjct: 796 EVENPFIILAA-NIDGKPQIAVIIDEELVKSKNLNAGQIVRDLAKEIQGGGG-GQPFFAT 853

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N    +  ++     
Sbjct: 854 AGGKNLAGLENVVSKAREL 872


>gi|224064089|ref|XP_002186563.1| PREDICTED: alanyl-tRNA synthetase [Taeniopygia guttata]
          Length = 968

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/971 (33%), Positives = 487/971 (50%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFRENKHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA +LLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALELLTKE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W  + GL+  +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGD-RDASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYLGQVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+PE
Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+++F KTL RG  +LD  +  LG  +++ GD A+ LYDT+G P D
Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSLGDSKVIPGDTAWLLYDTYGFPAD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + +   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMEGF----EEERKNAQLKSQGKGAGGEDLLMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +               + + VKAI ++ + VEE  +GQ+  +V D+T 
Sbjct: 476 QGLEVTDDSPKYN--YASDLSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  + D           + +VQ +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVR-GGYVLHIGTL-YGSLKVGDQVHL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           TID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K
Sbjct: 592 TIDEARRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGALSTQEIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
            +E   N +I ++  V  +     +A A  G  A+    Y D VRVVS+           
Sbjct: 651 KVEGIANQMIEESKTVYAKDCPLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLADP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD-- 739
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  AR  L   D  
Sbjct: 711 SGPGGSITSIEFCGGTHLQNSSHAGSFVIVSEEAIAKGIRRIVAVTGAEARKALRKVDSL 770

Query: 740 -EKLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            + L +L + +KV      +V   + ++ E        +++K +L  A + L+  ++DL 
Sbjct: 771 RKLLSALEAKVKVQTAPNKDVQKEITDLGETLATAIIPQWQKDELREAVKALKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               AD+                     +  + +   +K L   +   +        ML 
Sbjct: 831 RASKADIQKRVLEKTKQVIESHPNQPWVIMEMENGASAKALNESLKLFKTNSPQTAAMLF 890

Query: 829 GISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  + + L  V ++       A    +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 AVDNEAGRITCLCQVPQETANKGLKASQWVQEVSG-LMDGKGGGKDISAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+     F +
Sbjct: 950 EALKLATDFAR 960


>gi|315653055|ref|ZP_07905983.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195]
 gi|315489590|gb|EFU79224.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195]
          Length = 906

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/916 (36%), Positives = 507/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 34  TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 93

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 94  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 149

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 150 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 206

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 207 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 264

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 265 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 324

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 325 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 384

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 385 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 444

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 445 GLA-VDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 499

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 500 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 537

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 538 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 596

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 597 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 656

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 657 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 711

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 712 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 771

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 772 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQN 831

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 832 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 890

Query: 881 NGNKADQAIAGVASFL 896
           N     QA+  V + L
Sbjct: 891 NPAGLAQALETVLNEL 906


>gi|255039401|ref|YP_003090022.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254952157|gb|ACT96857.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 886

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/928 (35%), Positives = 489/928 (52%), Gaps = 81/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+   H ++PS+ L+  NDPTLMF NSGM  FK+ F G   P  + +
Sbjct: 1   MTSHQIRQAFLDFFRSKEHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT  + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTDVYKLP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY++V++ +E        EA+ LWK I G   ++II     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVSVFEGNEADGVPFDQEAWDLWKGIVG--EERIILGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + +EIWNLVFMQFE++       LP   +DTGMG
Sbjct: 179 EIHIDLRSPAEVAEVSGKSLVNNDHPQVVEIWNLVFMQFERKADGSLIPLPSTHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFL 285
            ER+   +Q+KT+NYD D+F++ I   E ++G KY  N+     +  RVI DH+R+ SF 
Sbjct: 239 FERLCMAIQQKTSNYDTDVFQNTINVLETLSGKKYGQNDEPFADIAMRVISDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I DG LP+N   GYV+RRI+RRA+ Y    LG+ EP    L+P L  +    + EL   +
Sbjct: 299 ITDGQLPSNVKAGYVIRRILRRAVRYGYSYLGFQEPFFHKLVPVLAEQFKDVFTELKDQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
             +   +  E++ F +TL+ GL  LD ++  L +     + GD  F+L DT G P+D+  
Sbjct: 359 EFVTRVILEEEKSFLRTLESGLKRLDSIIGGLKETGLNTIPGDEVFELSDTFGFPVDLTA 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +    ID   +  AL EQ+ R+R       +      W  L+E  G  +F+GYD 
Sbjct: 419 LIAREKNFR-IDEAGYQDALAEQKKRSR-----QDAAKEATDWIELRESDGV-EFLGYDF 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                 + + RKV  +                            +G++  +V D+TPFYA
Sbjct: 472 EETHSHIVKYRKVKTK----------------------------AGEEYHIVLDRTPFYA 503

Query: 523 EAGGQLGDTGCAI------GDGIR-LQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVL 573
           E GGQ+GDTG  +       DG R + I D +K+   +FVH +  +     L     +  
Sbjct: 504 EMGGQVGDTGALLLNSGSKEDGARSISIVDTKKE-NDLFVHISRDKNLDEALSGAGIVTA 562

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            I+ + R ++  NH+ATHL+  ++  +LG+HVSQ GS +  + LRFD  H   +T  EL+
Sbjct: 563 QINVERRNKIKSNHTATHLMLSSMREVLGTHVSQKGSYLNDEVLRFDFAHFSKVTDEELR 622

Query: 634 SIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            IED VN+ I +N+ +   R +  + A+ +GA A  G KY D VR++  + +     S  
Sbjct: 623 KIEDRVNEKIRENIALEERRNVPIQQALDAGATATFGEKYGDFVRLIIFDPK----FSFE 678

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV STGEI +   +SE S+ AG+RR+EA+TG++A   +  Q+E L  +   LK  
Sbjct: 679 LCGGTHVPSTGEIGVFKFISEGSVSAGVRRVEAVTGEKALELMRQQEETLNKIKDLLK-G 737

Query: 753 QGNVVGRVEEIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
             +++  VE + EE   LQ     L + K +        +    +  N +   +    + 
Sbjct: 738 PTDLIKAVENLIEERSALQKKISALENEKIQALKTTLVENMETHSTFNLIVQKVDVPSAD 797

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGG 865
            LK +   L+ ++++ +I + G     K  + + + E+++     NA  + +  A+ + G
Sbjct: 798 SLKQLSYELRDQVEN-LIAVFGAEIGGKPQLSVFIAENIVAETGLNAGKIVKDLAREIRG 856

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           G GGG+P  A +GG + +  D A+    
Sbjct: 857 G-GGGQPFFATAGGSDASGLDVALEKAK 883


>gi|260434774|ref|ZP_05788744.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412648|gb|EEX05944.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 889

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/904 (36%), Positives = 499/904 (55%), Gaps = 53/904 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL F+ + GH+ + S+SLIP  DPT++ T +GM+PFK +F GQ++      T+ Q
Sbjct: 19  EIREAFLNFYAERGHKRMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRATSSQ 77

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  + +D + L
Sbjct: 78  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVYGIDPKNL 133

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + G
Sbjct: 134 VVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-G 192

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY+
Sbjct: 193 NEGIDLEDDDRFIEFYNLVFMQYNRDAEGILTPLANRNIDTGMGLERMAQILQKVPNNYE 252

Query: 246 IDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   LIQA+  + G+ Y   N     + +VI DH R+ + LI DG+  +N GRGY+LR
Sbjct: 253 TDLIFPLIQAAADLAGVDYHHLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYILR 312

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF +TL
Sbjct: 313 RLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFLETL 372

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  VL+   K   ++G  AF+LYDT+G PL++ Q+I   +GLA +D+  F  A+
Sbjct: 373 ERGEKLLAEVLA--SKPTQISGAQAFELYDTYGFPLELTQEIAEEQGLA-VDLDGFEAAM 429

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RA+A ++ +     + I   + ++  AT F GY+ L                   
Sbjct: 430 EEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFDGYEALDHD---------------- 472

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  S V+A+V  GE    A +G  V+VV D TPFY E GGQ+GD G   G  + ++
Sbjct: 473 -------SCVQALVVNGEPASTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLSGSDLIVR 525

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I  V +  + +FVH   VERG L    ++   +D   RR+   NH+ATHLL  AL  ++ 
Sbjct: 526 IESVSRSRD-VFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQVVD 584

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             + Q GS +  D LRFD      +T+ +L+ +E  +N  I +   +  + M  + A A+
Sbjct: 585 PGIGQAGSLVDFDRLRFDFHCPTAVTADQLQQVETLINGWINEAHALQVQEMAIDQAKAA 644

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV+ES + AGIRR
Sbjct: 645 GAVAMFGEKYADLVRVVDVPG-----VSMELCGGTHVANTAEIGLFKIVAESGVAAGIRR 699

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKR 777
           IEA+ G    ++L  +D  +K L    K     +V RV  + EE +              
Sbjct: 700 IEAVAGPAVLAYLNERDSVVKQLGDRFKAQPAEIVDRVAALQEELKATGRALAAAQAELA 759

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE---- 833
             +          + D   +   +  VD   L+    +L  ++  G  +++G   +    
Sbjct: 760 VAKAGALAAKAEALGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDPGEM 819

Query: 834 KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K  ++    + +   +  A       AK  GGGGG GRP++AQ+GG +G     A+   
Sbjct: 820 GKVILVAAFGKQVIAAKLQAGKFIGGIAKQCGGGGG-GRPNLAQAGGRDGAALPAALEFA 878

Query: 893 ASFL 896
            S L
Sbjct: 879 RSEL 882


>gi|307721802|ref|YP_003892942.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306979895|gb|ADN09930.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 850

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/896 (38%), Positives = 504/896 (56%), Gaps = 53/896 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  +L+FF+   H  +PS+ L+P +D TL+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIREEYLKFFESKQHTRVPSAPLVP-DDATLLFNNAGMVPFKSIFTGEVPRPANPRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   LD+ +
Sbjct: 61  QTCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFITEVLHLDKDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  +WKK   ++A++I+R+   DNFWSM +TGPCGPCSEIF+DQG E  
Sbjct: 121 LWVTVHESDDEAEAMWKK--HIAAERIMRLGDKDNFWSMGDTGPCGPCSEIFYDQGAEHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-ERFILPKMSIDTGMGLERMATVLQEKTN 242
            G       EG+R++EIWNLVFMQ+E + K  +R  L   SIDTGMGLER+  + +   +
Sbjct: 179 TGPEDYMGGEGDRFLEIWNLVFMQYEVKEKGGQRVPLAHPSIDTGMGLERVVAIKEGALS 238

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NY   LF  +I+  E + G +Y   +  ++RVI DH+R++ FL+A G+  +NEGRGYVLR
Sbjct: 239 NYGSSLFMPIIRKVEDMIGKEYIYASGASYRVIADHIRTTVFLLAQGVNFSNEGRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +  LLG+ EP M  L+  L   MG  Y  L      ++E +  E+ RF KT+
Sbjct: 299 RILRRAVRHGYLLGFREPFMYKLVDTLVDIMGGEYEYLNTKANAVKEQIELEEARFFKTI 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           + G+ L +  + +    +  +G+VAFKLYDT+G PLD+ +D+L  + L+ +D   F + +
Sbjct: 359 ESGIALFNMEMQNTK--DAFSGEVAFKLYDTYGFPLDLTEDMLKEKNLS-LDTAKFEELM 415

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            EQR RA+A   G G       + +L E++G  +F+GY+                     
Sbjct: 416 SEQRKRAKAAWKGSGDDAVSGDFKALLEEFGENEFVGYETT------------------- 456

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
              +  S ++  + +    VE  + GQK  V  D TPFYA++GGQ GD G         +
Sbjct: 457 ---HHASKVLSLLDENFIRVEALIKGQKGWVFLDVTPFYAQSGGQCGDAGELK---EHAK 510

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D  KK  G+ +    VE   L+   ++   +D   R +++ +HSATHLLH  L  +LG
Sbjct: 511 VLDT-KKFFGLNLSRIAVE-NELKVGDAVDAEVDIS-RNEITKHHSATHLLHAVLFDVLG 567

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+SQ GS +  + LRFD +H K ++  EL+ IE+ VN  I + +P  T ++  E+A  S
Sbjct: 568 EHISQAGSLVEANRLRFDFSHPKAVSEQELQEIEERVNVEIMRAIPAQTEVLPIEEAKKS 627

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA +  G KY D VRVVS         S   CGG HV +T  I    I  ES + AG+RR
Sbjct: 628 GAKSQFGEKYGDEVRVVSF-----ADASVEFCGGVHVENTANIGSFIITKESGVSAGVRR 682

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G  A  +   Q   LK     +K    +++  +  +     +L+    + +    
Sbjct: 683 IEAVCGNTAYKYFCEQRALLKEAQGEVK--NLDLLAGIHRLKSNIAELKSELKEAQESAK 740

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           VE     K   +N ++ ++ E+ S ++K  +D L+ +      ML  +  + K  +   V
Sbjct: 741 VE----IKTDAINGVTVVVDELPSGDIKEKIDELKNQNDKLCAMLFQVKGD-KVLIAAGV 795

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    A D  +  A +LGGGGG GRP  AQ+GG + +K  +A      F+ +
Sbjct: 796 K---GCEAKAGDWIKKIAPILGGGGG-GRPDFAQAGGKDASKLPEAKEEAMKFITE 847


>gi|88809533|ref|ZP_01125041.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786752|gb|EAR17911.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 894

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/913 (37%), Positives = 504/913 (55%), Gaps = 58/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF++ GH  +PS+SL+P  DPT++ T +GM+PFK IF GQ++      T
Sbjct: 16  TGAEIREAFLSFFEQRGHRRMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD 
Sbjct: 75  TSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ  +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQSNRDAQGVLTPLANRNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI+DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADRAGVDYYQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SA+P+LI+ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLIERREVILAELQREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ Q+I    GLA +D+  F 
Sbjct: 370 ETLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+QR RA+A ++ +     + I   +      T+F GY+ L  S             
Sbjct: 427 TAMEQQRQRAKAAAVSIDLTLQDAIDQ-VAAGLQDTEFRGYEQLEQS------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---- 535
                     S ++A+V  GE  + A +G  V+VV D TPFY E GGQ+GD G  +    
Sbjct: 473 ----------SSIQALVVNGEPAQSASAGDAVQVVLDVTPFYGEGGGQIGDCGTLVADGQ 522

Query: 536 -GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GDG+ + +  V +    +FVH   VERG L     +   +D   RR+   NH+ATHLL 
Sbjct: 523 AGDGLIVMVESVSRNRS-VFVHSGRVERGALSVGDVVHGRVDRACRRRAQANHTATHLLQ 581

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++   + Q GS ++ D LRFD    + +T+ EL  IE  +N  IA    +  + M
Sbjct: 582 AALKQVVDPGIGQAGSLVSFDRLRFDFHCPRAVTTEELGRIESLINGWIADAHALEVQEM 641

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A A+GA A+ G KY D V        D    S  LCGGTHV +T EI L  IVSES
Sbjct: 642 AIEQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVRNTAEIGLFKIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----- 769
            + AGIRRIEA+ G     +L  +D  +K L    K   G ++ RV  + +E +      
Sbjct: 697 GVAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVSALQDELKATGKAL 756

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                     +          + +   +   +  VD   L+    +L  ++  G  +++G
Sbjct: 757 AAAQAELAVAKSAALAAQAVAVGNFQLLVERLDGVDGSGLQGAAQSLVDQLGDGGAVVIG 816

Query: 830 ISKE----KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +     K  ++    +D+   +  A       AK+ GGGGG GRP++AQ+GG +G  
Sbjct: 817 GLPDPADQGKVILVAAFGKDVIAAKLQAGKFIGGIAKLCGGGGG-GRPNLAQAGGRDGAS 875

Query: 885 ADQAIAGVASFLK 897
            D A+    + L+
Sbjct: 876 LDAALTAARAELE 888


>gi|254557076|ref|YP_003063493.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1]
 gi|254046003|gb|ACT62796.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1]
          Length = 880

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 505/919 (54%), Gaps = 67/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPNNPRMT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F  
Sbjct: 65  SSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGW 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A K W + +G+  D II++   DNFW + + GP GP SEIF+D+G
Sbjct: 121 DPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRG 176

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+E+WN+VF QF    +     LP+ +IDTGMGLER+
Sbjct: 177 EAFNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290
            +V Q    N++ DLF  +I  +E+++  K+ G+   + V+ +VI DH R+ +F I+DG 
Sbjct: 235 VSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE+ 
Sbjct: 295 LPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKI 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++     
Sbjct: 355 VASEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAGDE 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D   F   ++ QR RAR       S   ++    L +    ++++GYD L     
Sbjct: 415 DL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL----- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V   +  I+    +V+   SGQ  E++F +TPFYAE GGQ+
Sbjct: 467 -----------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQV 508

Query: 529 GDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  + D      ++TDVQ       +H   V +  +R + +  L +D     ++  N
Sbjct: 509 ADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLK-PMRKDATYTLNVDLAFHNKVEKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I   
Sbjct: 568 HTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+ 
Sbjct: 628 LPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++  
Sbjct: 683 LFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQA 742

Query: 766 EYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + +  Q   A  + +L          ++ DVN  + I  +++     +L+ + D  + K 
Sbjct: 743 DLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQ 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L  +  E K ++L+ V++D +     A DL +  A  +GGGGG GRP +AQ+GG
Sbjct: 803 YSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGGG-GRPTLAQAGG 860

Query: 880 PNGNKADQAIAGVASFLKK 898
                   A+     +L +
Sbjct: 861 KKPAGLPAALKAAHEWLAE 879


>gi|33864421|ref|NP_895981.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|41018180|sp|Q7V419|SYA_PROMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33641201|emb|CAE22331.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str.
           MIT 9313]
          Length = 892

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/913 (36%), Positives = 509/913 (55%), Gaps = 56/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ +      T
Sbjct: 16  TGSEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELTTEVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +I+R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAETIWRDVVGVNPKRIMRMDEADNFWASGPTGPCGPCSEIYYDFKPD 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 191 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ D+   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDIIYPLIETAAGLAGLDYQKLDEKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           ++RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF 
Sbjct: 310 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+++QR RA+A ++ +   T +     +  +  AT+F GY++L                
Sbjct: 427 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFQGYEVLEQPC------------ 473

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                       V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G   G+G 
Sbjct: 474 -----------CVLALVVNGESAERASAGDSVQIVLDTTPFYGESGGQVGDHGVLSGEGS 522

Query: 539 ---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +   D   +   +FVH   +ERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 GGNGVIVTVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++ S + Q GS +  D LRFD   ++ +T+ EL+ IE  +N  I ++  ++   M+
Sbjct: 583 ALKQVVDSGIGQAGSLVDFDRLRFDFHCARAVTAKELEQIEALINGWIMESHDLIVEEMS 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ESS
Sbjct: 643 IQEAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESS 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +DE +K L   LKV    +V RV  + EE +  Q    
Sbjct: 698 VAAGIRRIEAVAGPAVLAYLNERDEVVKKLLERLKVQPSEIVERVTSLQEELKSSQKALT 757

Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V            + +   +   +  V+   L++    L  ++  G  +++G 
Sbjct: 758 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDGAAVVLGG 817

Query: 831 ----SKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               S E K  ++    + L+ +   A       AK  GGGGG GRP++AQ+GG +G   
Sbjct: 818 LPDPSDEGKVILVAAFGKQLIAQGQQAGKFIGSIAKRCGGGGG-GRPNLAQAGGRDGAAL 876

Query: 886 DQAIAGVASFLKK 898
           D A+      L++
Sbjct: 877 DGALEAAKVDLQQ 889


>gi|303232757|ref|ZP_07319442.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302481243|gb|EFL44318.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 883

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/916 (35%), Positives = 497/916 (54%), Gaps = 64/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  G +  PSSSLIP +DP+L+  N+GM  FK  + G +       
Sbjct: 9   MTTAQIRENFLQFFESKGCKRYPSSSLIP-DDPSLLLANAGMNQFKEYYQGIKTMREIGA 67

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T+ QKC+R     ND++N+G   RH +FFEMLGNFSFGGY K +AI  AW+ +T  +   
Sbjct: 68  TSCQKCLRT----NDIENIG-DARHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPEHLG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           L + RLY+TV+  D+EA +LW++  G+    I R+   DNFW+   TGPCGPCSEI+FDQ
Sbjct: 123 LPKDRLYVTVFTNDDEACELWQE-QGVDLSHISRLGEEDNFWAAGPTGPCGPCSEIYFDQ 181

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           G    G  PG  ++G+RY+E WNLVF QF++Q       LP  +IDTGMGLER+A ++Q 
Sbjct: 182 GPEFEGEKPG--DDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERIAAIMQH 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +NY+ D+ + LI   E+++  +Y        + R++ DH R+ +F+I DGILP NEGR
Sbjct: 240 QGSNYEGDVLRTLIAVGEKLSNKRYHETAATDKSLRILADHARACTFMIGDGILPGNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ + RLLG     M      +   M ++YP+L + K  I+  + +E++R
Sbjct: 300 GYVLRRLLRRAIYHGRLLGIRGEFMRTYTHEVMRLMATSYPQLTEGKDRIDAIVSAEEQR 359

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TLD G  LL+  L+ L   + L+G+VAFKL+DT+G P+D+  +I         D+ +
Sbjct: 360 FCATLDAGEALLNKELAQLPSGKPLSGEVAFKLHDTYGFPIDLTCEIA-ENAQHPTDMDT 418

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           FN  +E+Q++RARA +     G    IW SL ++   T+F+GY                 
Sbjct: 419 FNALMEDQKARARAQANRDAWGQANSIWASLSDELSETEFLGYTQNSCDD---------- 468

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       + V A+V+ G +V  A  G  V+V+ D+TPFY E GGQ+GDTG     
Sbjct: 469 ------------ARVLALVRDGALVPSASCGDVVDVILDKTPFYGERGGQVGDTGTLRCG 516

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              L + D Q +A  + VH   V++G +    ++   ID   R  +  NH+ATHLL  AL
Sbjct: 517 ESVLHVDDTQHQAHILIVHTCTVQKGSIAKGDTVSAQIDVTRRELIRRNHTATHLLQAAL 576

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG HVSQ GS + PD LRFD TH + +T  ++  +E  VN  I    P+VTR++   
Sbjct: 577 KQVLGKHVSQAGSLVAPDRLRFDFTHFEALTRDQIDQVEAIVNREIFAAEPMVTRVVPLA 636

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A  + A AL    Y+  VR+V     +  V+S  LCGGTHV +T +I    I+SE+S+ 
Sbjct: 637 EARKTDAIALFDEMYDADVRIVQTGSSEDAVYSRELCGGTHVRNTADIGYFKIISETSVG 696

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLI 773
           + +RR+EA+T   A  ++  +  +L  LAS LK  + +V+ RV+++        +KL+  
Sbjct: 697 SNVRRLEALTSCGAYEYVDAKLSELGQLASMLKCREDDVLARVDQLKSSLSAADKKLKAA 756

Query: 774 HAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS--GIIMLVGI 830
            +          + S +  +    +   +  V++K+L+S+ D +++ +       +L   
Sbjct: 757 LSGSSSDQVSSAVSSAYNKSGYKLVIAHVQHVEAKDLRSMWDGIRQCMNQTPCACVLASS 816

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLAR----------LSAKVLGGGGGGGRPHMAQSGGP 880
           + EK A +     + +   F+A  + +               +            Q+GG 
Sbjct: 817 TGEKAALLAAATDDAIAAGFDAAQVIKAIAGAIAGHGGGKAAMA-----------QAGGT 865

Query: 881 NGNKADQAIAGVASFL 896
           N    D A+A   + L
Sbjct: 866 NAQGIDDALAQARTLL 881


>gi|157412393|ref|YP_001483259.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|205830179|sp|A8G242|SYA_PROM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157386968|gb|ABV49673.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 886

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/908 (35%), Positives = 507/908 (55%), Gaps = 52/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL+F+ +  H+++PS+SL+P +DPT+M T +GM+PFK +F G ++   +  T
Sbjct: 11  TGDEIRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRAT 69

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+L+TK + L  
Sbjct: 70  SSQKCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSS 125

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             + ++++ EDEE+ K+W +  G++ D+I+++   DNFWS  +TGPCGPCSE+++D    
Sbjct: 126 ENIIVSIFHEDEESEKIWIEEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNPE 185

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+G+R+IE +NLVFMQ  + +  +   L   +IDTGMGLERMA +LQ+K+N
Sbjct: 186 K-GLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +IQ + +++ + Y   +    ++ +++ DH R+   LI+DG+  +N GRGY
Sbjct: 245 NYETDLIFPIIQKASKISSINYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +  +  +       M + YP+L     LI   ++ E+ RF 
Sbjct: 305 ILRRLLRRMVRHGRLLGIKKEFLSDIASVGIKLMENNYPDLKNNNELILSEIKIEEVRFR 364

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LLD ++S     ++++G  AF+LYDT+G PL++ ++I     +  +DI  F 
Sbjct: 365 ETLERGEKLLDEIIS--SGQKLISGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQ 421

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           + ++ Q+ RA+A S  +   T E       + +  T F G D L                
Sbjct: 422 REMDAQKERAKAASSNIDL-TLEGSLEREIDLFNKTIFNGEDCLDS-------------- 466

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + ++ I     +V++A  GQ+V++V DQT FY E+GGQ+GD G       
Sbjct: 467 ---------EAKIQGIFLDSNLVKKASEGQRVQIVLDQTSFYGESGGQVGDNGIICSTDA 517

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +  V +K   +F+H  IV+ GI     ++   ++   R + S NH+ATHLL  AL  
Sbjct: 518 EILVDKVVRKKN-VFLHDGIVKNGIFTVGQTIKTVVNPAKRVRASANHTATHLLQSALKE 576

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++  +VSQ GS +  + LRFD   SKP++  +++ +E  VN  I QN P+V + M + +A
Sbjct: 577 VVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKREA 636

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +  GA A+ G KY D VRVV V        S  LCGGTHV +T E+    I+SE  I AG
Sbjct: 637 LEKGALAMFGEKYGDEVRVVDVPG-----VSMELCGGTHVKNTSELGCFKIISEEGISAG 691

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEA++GQ A  +   ++  +  L+  LK +   +  RV  +  E         K K 
Sbjct: 692 VRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSELINKNKEIQKMKD 751

Query: 780 QLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKE 833
           ++          S   +   + + + I  +D   L+S    L  ++ +  +++L GI   
Sbjct: 752 EIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVILGGIPNP 811

Query: 834 KKASVLIVVT---EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +   +L VV+   E +    +A  L    A++  GG GGG+P+ AQ+G  + +K D A+ 
Sbjct: 812 ENRKLLFVVSLGDEAVKIGLHAGKLINEIARICAGG-GGGKPNFAQAGARDIDKLDFALD 870

Query: 891 GVASFLKK 898
              + L+K
Sbjct: 871 YAKNHLQK 878


>gi|331701288|ref|YP_004398247.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
 gi|329128631|gb|AEB73184.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929]
          Length = 880

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/925 (35%), Positives = 502/925 (54%), Gaps = 77/925 (8%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +S   IR  +L+FFQ+ GH + PS+SLIP +DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKQLSSGQIRQMYLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T+ QK +R     ND++NVG+T RHHT FEMLGNFS G YFK+ AI  A++LLT  K
Sbjct: 61  PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAITWAYELLTSPK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +LY+TVY +D++A   W+K+ G++ D II I   DNFW + + GP GP SEIF
Sbjct: 117 WFGWDPDKLYMTVYPKDKDAKMYWEKV-GVAPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 172

Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +D+G+      P   E     E +R++E+WN+VF QF    +     LP+ +IDTGMGLE
Sbjct: 173 YDRGKDFDNLAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 232

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           R+ ++ Q    N++ DLF  +I+ +E+++   KY+ N   N   R+I DH R+ +  I D
Sbjct: 233 RVVSIFQHARTNFETDLFLPMIRKTEELSDNKKYDTNKKDNEAFRIIADHARAITVAIGD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G LP+N GRGYV+RR++RRA+   + LG  E  +  L+P +   + S YP++++ K  I 
Sbjct: 293 GALPSNVGRGYVIRRLIRRAIVNGQRLGINEAFLYKLVPVVGQTLESYYPDVLKQKDYIA 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           + +RSE++RF +TL  GL L + V+     +    ++G  AFKLYDT+G P+++ ++   
Sbjct: 353 KVVRSEEDRFNETLTDGLKLFNQVVKDAKANHQTTIDGPTAFKLYDTYGFPVELTEEEAN 412

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL+ +D   F   +++Q+ RAR    G  S   ++    L E    ++++GYD L   
Sbjct: 413 DAGLS-VDKPGFEVEMQKQKDRARKARSGAKSMGVQRDL--LIEIKDPSEYVGYDTLDVD 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  IV+  ++V+    G  VEV+FD+TPFYAE GG
Sbjct: 470 H----------------------AELLEIVENEKLVDH-SKGGSVEVIFDKTPFYAEMGG 506

Query: 527 QLGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+ D G  + +       + DVQ    G  +H     +  L    +  L +D     ++ 
Sbjct: 507 QVADRGVVLDEEGDKVADVVDVQHAPNGQNLHTLK-TQEPLEKGKTYHLIVDKLFHSRVE 565

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL  +L  +LG H  Q GS + P+ LRFD  H   +T  +L+ +ED VN  I 
Sbjct: 566 KNHTATHLLDQSLRNVLGGHTQQAGSLVEPNYLRFDFNHFGQVTDEDLQKVEDMVNRQIF 625

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + V T + + +     GA AL   KY D+VRVVS+     G  S   CGGTHV++T +
Sbjct: 626 NEIDVNTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVNNTRD 680

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763
           I L  IVSES + AG+RRIEA+T + A   L   +++LK +A  LKV+Q  +   RV+++
Sbjct: 681 IGLFKIVSESGVGAGVRRIEAVTAKDAFKLLNDHEKELKQIAGDLKVTQIKDTPKRVDQL 740

Query: 764 WEEYRKL----QLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQK 818
             E + L    Q + AK   Q      +  K A   + ++ II +    +L+ + D  + 
Sbjct: 741 LGEIKDLTQKQQSLEAKLAGQQAQNVFADKKTAGKYSIITGIIKDAGMDQLRQLADTWRS 800

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG-------R 871
           K  S +++L   S +K   ++ V  E +     A DL +  A        G        R
Sbjct: 801 KHLSDVLVLGTGSGDKANLIVAVADEQIKAGIKAGDLIKSIA--------GNIKGGGGGR 852

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P+MAQ+GG +    D+A++    +L
Sbjct: 853 PNMAQAGGKDPAGLDKAMSAAVDWL 877


>gi|182418956|ref|ZP_02950213.1| alanyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237667051|ref|ZP_04527035.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377239|gb|EDT74807.1| alanyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237655399|gb|EEP52955.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 879

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/909 (35%), Positives = 515/909 (56%), Gaps = 48/909 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  + +R  +L+FF+  GH  L S SL+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FTKTNDLRDAYLKFFESKGHLKLDSFSLVPKNDNSLLLINAGMAPLKPYFTGLQEPPRKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VTT QKCVR G    D++NVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT+  ++
Sbjct: 63  VTTCQKCVRTG----DIENVGITSRHGTFFEMLGNFSFGDYFKKEVIPWAWEFLTEVLEM 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F + 
Sbjct: 119 PKDKLYVTIYLDDDEAYEFWTTLTDVDKSHIFRLGKEDNFWEHGA-GPCGPCTEIHFSRT 177

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V+Q
Sbjct: 178 DDVPKNAEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
           EK + ++ID  ++++     + G++Y  N    ++ R+I DH+RS +F+I+D I+P+NEG
Sbjct: 238 EKNSIFEIDTLENILNEVANLAGVRYGENKKTDISLRLITDHIRSITFMISDDIMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  +  + +L   +  +   AY EL   +  I++ ++ E++
Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDSKEAYAELEAKREYIKKVIKIEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD G+ +L+G +S L ++  +IL+G   FKLYDT G P+++ ++IL   G + +D
Sbjct: 358 KFRETLDAGIEILNGFISELKENNKKILSGAEGFKLYDTFGFPMELTKEILEDEGFS-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             +F++ ++ QR RAR           +            T+F GY              
Sbjct: 417 EDAFHEEMKIQRERARNARKVSNYMGADVKTSDAISADVETEFDGY-------------- 462

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      N +   V+ ++   +  +    G K  +V D TPFYAE GGQ+GDTG  
Sbjct: 463 ---------TNNQLQGKVEVLIDGEDFADSLTEGNKGILVTDVTPFYAEMGGQIGDTGLI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + ++ D +K   G  VH   V  G ++   ++ L ID + R ++  NH+ATHLL 
Sbjct: 514 YNDSFKAKVVDTKKNMGGKIVHFVEVLSGEVKINDTVTLEIDNERRERIRKNHTATHLLD 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS +T + LRFD +H + ++  ++  +ED VN+ I    PVVT +M
Sbjct: 574 RALVKVLGSHVHQAGSLVTDERLRFDFSHFEGLSEEDILKVEDLVNEAIMSVTPVVTEVM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +  DA  SGA  +   KY D+VRVV+      G +S  LCGGTH+ +TG+I L  I+SES
Sbjct: 634 DLNDAKNSGAIGIFDDKYGDKVRVVT-----AGEYSKELCGGTHIDNTGKIGLFKILSES 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA+TG+ A   +  ++E LK     LK +Q  +  ++E+  +E ++ +   
Sbjct: 689 GIAAGTRRIEAVTGKEAVKFINEKEELLKEACGKLKCTQKEITSKIEQNLKEIKEKEKEI 748

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           +  K +     L        ++  +N +S+ + +VDS  L+ V + ++ K+++ +++L+ 
Sbjct: 749 SALKAKFAAMGLDDIIASSKEVKGINVVSYELKDVDSDTLREVCEKVKDKVENSVVLLMS 808

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K  +  + ++D +    +   L +  + +LGGGGG GRP MAQ+GG    K + A
Sbjct: 809 -ENAGKVIICAMASKDAVKNGAHCGKLIKEVSAILGGGGG-GRPDMAQAGGKLPEKINDA 866

Query: 889 IAGVASFLK 897
           I      ++
Sbjct: 867 IEESYKIVE 875


>gi|259501304|ref|ZP_05744206.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335]
 gi|259167274|gb|EEW51769.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335]
          Length = 906

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/916 (36%), Positives = 506/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 34  TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 93

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 94  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 149

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 150 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 206

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 207 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 264

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 265 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 324

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 325 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 384

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 385 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 444

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  +  Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 445 GLA-VDKEEFDAEMRAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 499

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 500 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 537

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 538 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 596

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 597 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 656

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 657 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 711

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 712 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 771

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 772 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQN 831

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 832 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 890

Query: 881 NGNKADQAIAGVASFL 896
           N     +A+  V + L
Sbjct: 891 NPAGLAKALETVLNEL 906


>gi|195397897|ref|XP_002057564.1| GJ18196 [Drosophila virilis]
 gi|194141218|gb|EDW57637.1| GJ18196 [Drosophila virilis]
          Length = 967

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/972 (31%), Positives = 476/972 (48%), Gaps = 86/972 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
                 +R T+L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   FLTAKEVRDTYLNFFKEKQHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  AKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEFLT 122

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
              +L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 VRLNLPKDRLYVTYFGGDVASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           +++    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  T         G        + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGL 396
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG ++  + GDVA++LYDT+G 
Sbjct: 361 PEVKKDPQQIMDIINEEELQFLKTLTRGRNLLNRTIEKLGANQTTIPGDVAWRLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   + L  ID+  ++ A    +  +   S G G+   E+I   +       +
Sbjct: 421 PVDLTQLMAEEKSL-QIDMAGYDAA----KQNSYILSQGKGASKIEEINLDVHAISQLQE 475

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S F  +   V  ++      +  +S + A+  + + V+E  SGQK  +V D
Sbjct: 476 -QGVPPTNDS-FKYKYEAVSNERDSAYNYSECTSKIVALRYENKFVQEISSGQKAGIVLD 533

Query: 517 QTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           +T FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     + L 
Sbjct: 534 KTNFYAESGGQIYDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDEVQLH 592

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 593 IDAERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVAK 652

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
            E    D++ +N+P+  +      A    G  ++    Y D VRV+S            +
Sbjct: 653 TEQLTRDMVYKNMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLEAQPD 712

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 713 AEAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFQ 772

Query: 743 KSLASFLKVSQGN--------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVEDL 786
           + ++      + +         V ++ E+ E+         +K ++ +  + L+  ++D 
Sbjct: 773 QEISKLQATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDDK 832

Query: 787 SCHKIADVNFMS---------------HIISEVDS----KELKSVMDALQKKIQSGIIML 827
                A V+                   ++ ++++    K L + +  ++ ++     M 
Sbjct: 833 ERALRAAVSVTVVERAKALCEANPQANVLVQQLEAYNNTKALDAALKQVRSQLPDAAAMF 892

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           V +  + KK   L  V +  +++   A +  +  + VL GG GGG+P  AQ+ G N  + 
Sbjct: 893 VSVDADSKKIFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFERV 951

Query: 886 DQAIAGVASFLK 897
           D+ +     F +
Sbjct: 952 DEIVQLARKFAQ 963


>gi|296139683|ref|YP_003646926.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027817|gb|ADG78587.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 890

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/922 (35%), Positives = 483/922 (52%), Gaps = 61/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F + F K GH  +PS+SL+  NDP  +F  +GMVPF   F GQ+ P Y+  
Sbjct: 1   MQTHEIRKRFTDHFVKAGHTQVPSASLV-LNDPNQLFVIAGMVPFVPYFLGQQTPPYERA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKRDAIRFAWSLLTNPVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D +RL+ TVY +D+EA  LW ++ G   ++I R    DN+WSM   GP GPCSEIF
Sbjct: 116 GFGMDPQRLWSTVYLDDDEARDLWLEV-GQVPERIQRRGMKDNYWSMGIPGPAGPCSEIF 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+     +        LPK +IDTGMG+
Sbjct: 175 YDRGPEY-GVEGGPEADEDRYIEIWNLVFMQNERGQGGGKENFEILGELPKKNIDTGMGI 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N YD DL + +I  ++ +TG +Y   +  +    RVI DH R++  LI 
Sbjct: 234 ERVAFLLQGVDNVYDTDLLRPVIDRAQDLTGQRYNAGDPEHDRLFRVIADHTRTAVMLIE 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  ARLLG T   M   +  +   M  +YP L      I
Sbjct: 294 DGVNPGNDGRGYVLRRLLRRVVRSARLLGATGETMGVFVDTVIATMSPSYPSLADDAQRI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
                 E+  F KTL++G+ L    +         +L+GD AF L+DT+G P+D+  ++ 
Sbjct: 354 RTVATGEEAAFLKTLEQGITLFGNAVDSTKSAGKTVLSGDDAFTLHDTYGFPIDLTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F   + EQR RA+  +    S   +   F      G T+F G+D L  
Sbjct: 414 SEAGL-QVDEDGFRALMAEQRQRAKDDANSRKSALADLSVFREFLDRGPTEFTGFDELVS 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V  +V+ G  V     G  VE+V D++P YAEAG
Sbjct: 473 D-----------------------ARVLGLVKDGVRVPVVHQGDDVEIVLDRSPLYAEAG 509

Query: 526 GQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G      G ++ +TDVQ+ A+ ++ H   V  G +    ++ + +D  +R   +
Sbjct: 510 GQLADIGTITTAAGAQIVVTDVQRVAKTLWRHQGTVAVGEVSEGDAVTVAVDAGHRHGST 569

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS THL+H AL  +LG +  Q GS   P  LRFD   S  ++  +   IE   N+ + 
Sbjct: 570 QGHSGTHLVHAALRQVLGPNAVQAGSLNRPGYLRFDFRWSGGLSEDQRTDIERVTNEAVQ 629

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T++ + E A  SGA AL G  Y D+VRVV +    GG  S  LCGGTHV+S+G 
Sbjct: 630 ADYDVHTQVTDLETAKKSGAMALFGENYGDQVRVVEI----GGPFSMELCGGTHVASSGL 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +  + ++ ESS+ +G+RR+EA  G  ++ +L  +   + +L S LKV   +V GRVE + 
Sbjct: 686 VGPVTLLGESSVGSGVRRVEAYVGLDSQKYLAKERALVSALTSSLKVPAEDVPGRVESLV 745

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHII-SEVDSKELKSVMDALQK 818
              +  +    K + Q  +  LS       ++  V  ++    S V + EL+S++  L+ 
Sbjct: 746 SRLKDAEKELEKLRAQAALSALSELASSPDRVGAVRLVAAQAPSGVAAGELRSLVTQLKG 805

Query: 819 KI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++  ++ +I L  +  EK   V+            A D+ + +A  + GG GGG+  MAQ
Sbjct: 806 RLGAEAAVIALFAVDGEKVPFVVAANDAAQDLGVKAGDVVKAAAPAV-GGRGGGKADMAQ 864

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
             G + +    A+A V + + +
Sbjct: 865 GAGSDASGMGAALAAVRAEVAR 886


>gi|227877600|ref|ZP_03995654.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256849054|ref|ZP_05554487.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|262047536|ref|ZP_06020491.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
 gi|227862794|gb|EEJ70259.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01]
 gi|256713830|gb|EEU28818.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US]
 gi|260572112|gb|EEX28677.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US]
          Length = 879

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 496/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDRKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL +D + R  L  +
Sbjct: 508 ADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLI-LPVEKGQEYVLKLDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        ++N            +  D+  ++         +L+ + D  +   
Sbjct: 742 DLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A +L +++A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
           N    + AI  V   + K
Sbjct: 861 NPAGLNDAIKAVIDEISK 878


>gi|300768023|ref|ZP_07077929.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181070|ref|YP_003925198.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|300494372|gb|EFK29534.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308046561|gb|ADN99104.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 880

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 505/919 (54%), Gaps = 67/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDNPRMT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F  
Sbjct: 65  SSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGW 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A K W + +G+  D II++   DNFW + + GP GP SEIF+D+G
Sbjct: 121 DPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRG 176

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+E+WN+VF QF    +     LP+ +IDTGMGLER+
Sbjct: 177 EAFNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290
            +V Q    N++ DLF  +I  +E+++  K+ G+   + V+ +VI DH R+ +F I+DG 
Sbjct: 235 VSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE+ 
Sbjct: 295 LPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKI 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++     
Sbjct: 355 VASEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAGDE 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D   F   ++ QR RAR       S   ++    L +    ++++GYD L     
Sbjct: 415 DL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL----- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V   +  I+    +V+   SGQ  E++F +TPFYAE GGQ+
Sbjct: 467 -----------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQV 508

Query: 529 GDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  + D      ++TDVQ       +H   V +  +R + +  L +D     ++  N
Sbjct: 509 ADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLK-PMRKDATYTLNVDLAFHNKVEKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I   
Sbjct: 568 HTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+ 
Sbjct: 628 LPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++  
Sbjct: 683 LFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQA 742

Query: 766 EYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + +  Q   A  + +L          ++ DVN  + I  +++     +L+ + D  + K 
Sbjct: 743 DLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQ 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L  +  E K ++L+ V++D +     A DL +  A  +GGGGG GRP +AQ+GG
Sbjct: 803 YSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGGG-GRPTLAQAGG 860

Query: 880 PNGNKADQAIAGVASFLKK 898
                   A+     +L +
Sbjct: 861 KKPAGLPAALKAAHEWLAE 879


>gi|284097293|ref|ZP_06385431.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3]
 gi|283831199|gb|EFC35171.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3]
          Length = 734

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/761 (44%), Positives = 458/761 (60%), Gaps = 35/761 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N   +R +FL+FF    H ++PS+SL+P  DPTL+FTN+GM  FK +F G+E+  Y    
Sbjct: 4   NAHELRQSFLDFFHAADHAVVPSASLLPQADPTLLFTNAGMNQFKRVFLGEEQRSYSRAV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ A+   WD LTK   L  
Sbjct: 64  SVQRCMRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKKDAVHYGWDYLTKTLGLPA 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++TV+ +D+EAF+LW+   G+ A +I+R+   DNFW M ETGPCGPCSEI  DQG  
Sbjct: 124 DQLWVTVFQDDDEAFELWENSVGVPAARIVRLGYKDNFWQMGETGPCGPCSEIHIDQGAA 183

Query: 183 IPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           +  G        + +RY+EIWNLVFMQF++  +     LPK SIDTGMGLER+A V+Q  
Sbjct: 184 LGCGRASCAVGCDCDRYLEIWNLVFMQFDRDAEGNLHPLPKPSIDTGMGLERLAAVVQGV 243

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            +NY  DLF  L+ A    TG  Y  +     + RVI DHLR+ +F+I DGILP+NEGRG
Sbjct: 244 DSNYATDLFMPLLSAIAVRTGCGYGKDEASDRSMRVIADHLRAITFMIVDGILPSNEGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + RLLG TEP +  L   + TEM  AYPEL QA     + +  E+ERF
Sbjct: 304 YVLRRILRRASRHGRLLGVTEPFLYELTGTVATEMEGAYPELAQAGDTCRKVVEGEEERF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD+GL +L+ +++       L+G+  FKLYDT+G PLD++++    +GL   D+  F
Sbjct: 364 IGTLDQGLPILNRMVAEAEAGS-LDGESVFKLYDTYGFPLDLIEEAAREQGLVA-DLEGF 421

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +ALE QR RAR  ++ +     +     L ++   T+F+GY  L+              
Sbjct: 422 QRALEAQRDRARKSAVFVAE-QEKPFITELTQRLRPTEFLGYQALQS------------- 467

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      S+V+A+++   + +E V G  VE+V D TPFY E GGQ+GD G   G  
Sbjct: 468 ----------ESVVQAMLKGDALADEVVEGDDVELVLDATPFYPEGGGQVGDQGTLTGRE 517

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            R+QI +  K +  + +H   V  G +RT   L  T+D   R   + NH+ATHLLH AL 
Sbjct: 518 GRIQIRETTKVSGKLLLHKGTVVAGRVRTGEPLAATVDSVTRHGAARNHTATHLLHAALR 577

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG  V Q GS + P+ LRFD ++ KP+ + +L+ IE  VN  +  N  V T +M  ++
Sbjct: 578 EVLGPQVKQYGSLVAPNRLRFDFSYFKPLRTRDLEEIEAMVNFHVLGNTFVRTDVMGIQE 637

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           AI +GA A  G KY +RVRVV V     G  S  LCGGTH   TGEI    I SE  I +
Sbjct: 638 AIHAGALAFFGDKYGERVRVVGV-----GEFSKELCGGTHCQHTGEIGSFRITSEGGIAS 692

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           G+RRIEA+TG  A  H    +  ++ LA  LK S   VV +
Sbjct: 693 GVRRIEALTGTGALDHGKKLESDVRELAELLKSSPSEVVPK 733


>gi|284801894|ref|YP_003413759.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995036|ref|YP_003416804.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057456|gb|ADB68397.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060503|gb|ADB71442.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 832

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/869 (38%), Positives = 481/869 (55%), Gaps = 56/869 (6%)

Query: 46  FKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105
            K  F G   P    +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE 
Sbjct: 1   MKKYFDGSVIPDNPRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEG 56

Query: 106 AIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163
           AI  AW+ LT  K    D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +
Sbjct: 57  AIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDI 114

Query: 164 AETGPCGPCSEIFFDQGECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL 219
              GP GP SEIF+D+G                E ERY+EIWNLVF QF          L
Sbjct: 115 GI-GPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPL 173

Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVD 277
           PK +IDTGMGLERM +++Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI D
Sbjct: 174 PKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIAD 233

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+R+ +F I DG LP+NEGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S Y
Sbjct: 234 HIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFY 293

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+      I++ +R+E+ERF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G
Sbjct: 294 PEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFG 353

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+++ ++     GL  +D   F   ++EQR+RARA    + S   +     L      +
Sbjct: 354 FPVELTEEYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKS 410

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
            F+GY+                            S +  ++Q   +V+E  +G + +V+F
Sbjct: 411 AFVGYNSTEH-----------------------VSEILYLIQNDTLVDEVAAGNEAQVIF 447

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +TPFYAE+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +
Sbjct: 448 KETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAV 507

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR+   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +
Sbjct: 508 DRVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKM 567

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+ VN+ I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCG
Sbjct: 568 EEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCG 622

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV +T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +   
Sbjct: 623 GVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKE 682

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELK 810
              +VE +  + R+++  +     +L     +       +I  V  ++  ++  D  +L+
Sbjct: 683 TPQKVELLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLR 742

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869
             +D  + K   GI++L  +  + K +++  V+E+ +   ++A  L +  A    GG GG
Sbjct: 743 QFVDNWKDKKIGGILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGG 800

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GRP MAQ+GG N  +   A+  V++++K+
Sbjct: 801 GRPDMAQAGGKNPAELRTALDYVSTWVKE 829


>gi|293381586|ref|ZP_06627573.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1]
 gi|290921856|gb|EFD98871.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1]
          Length = 879

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 496/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL +D + R  L  +
Sbjct: 508 ADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLI-LPVEKGQEYVLKLDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        ++N            +  D+  ++         +L+ + D  +   
Sbjct: 742 DLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A +L +++A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
           N    + AI  V   + K
Sbjct: 861 NPAGLNDAIKAVIDEISK 878


>gi|282878226|ref|ZP_06287022.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281299644|gb|EFA92017.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 872

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/920 (35%), Positives = 508/920 (55%), Gaps = 73/920 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F +FF+  GH ++ S+ ++  +DPTLMFTN+GM  +K+I  G ++P  +  
Sbjct: 1   MTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI  AW+ L     LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D EA K W+K   L AD II    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D + +     LPG    +++  + IEIWN+VFMQF ++       L    IDTGMG
Sbjct: 179 EIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287
            ER+  +LQ K +NYD  +F+  I   E+++G KY     V+   RV+ DHLR+ +F IA
Sbjct: 239 FERLVRMLQGKNSNYDTGIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL+  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I + ++ E++ F +TL++G+ LL+  +  L K     ++G+ AF+L+DT+G PLD+ + I
Sbjct: 359 IGKVMKEEEDSFLRTLEKGINLLNNAMDELKKAGKTQIDGEQAFRLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G + +D   FN  +++Q+ RAR  +           W  +++  G  QF+GYD   
Sbjct: 419 CREHGFS-VDEQQFNAEMQKQKDRARNAAQ-----VENSDWVEIRQ--GEQQFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               + + RKV  +K                                EV+ D TPFY E 
Sbjct: 471 YECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  + +   + + D  K+     +H  I+++     E   +  +D   R   +
Sbjct: 503 GGQVGDQGVLVSEHETVDVIDT-KRENNQSIH--IIKQLPQHPEADFMACVDTDKRDACA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VN++I 
Sbjct: 560 ANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNNLIR 619

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           Q++P+        E+A   GA AL G KY D+VRVV          S   CGG H  STG
Sbjct: 620 QDIPLDEHRDTPIEEAKEMGAIALFGEKYGDKVRVVRFGP------SCEFCGGIHAKSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L  I+SESS+ AG+RR EAITG++    +   ++ +K++ S    +  ++ G +E+ 
Sbjct: 674 RIGLFKILSESSVAAGVRRFEAITGRKCEEAMYAIEDTVKAIRSLFN-NAKDLKGVIEKY 732

Query: 764 WEEYRKLQLIHAKRKLQLNV--EDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQKK 819
            +E+  ++    + + Q     +D    +  ++N ++ I  +  +D    K ++  +++ 
Sbjct: 733 MDEHDTMRKEIEQFQAQAVQRTKDELIRRAENINGVTVIKAVLPIDGNAAKDLVFKIREA 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           I S ++ ++G + ++K  + ++++ED++     NA  + R +AK++ GG GGG+PH A +
Sbjct: 793 IPSHLLCVIGTTAQQKPLLSVMLSEDMVKDHGLNAGQMVREAAKLIQGG-GGGQPHFASA 851

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N +    A+  V    K
Sbjct: 852 GGKNVDGIRAAVDKVIELAK 871


>gi|78188347|ref|YP_378685.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
 gi|123580381|sp|Q3ATN3|SYA_CHLCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78170546|gb|ABB27642.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3]
          Length = 886

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/923 (35%), Positives = 499/923 (54%), Gaps = 67/923 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y  
Sbjct: 1   MKS-HEIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGSRPYVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+K  AI  AW+L T  + L
Sbjct: 60  AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAITWAWELFTVVWKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY +D+E+F++WK+ + ++ D I+R    DNFW M ETGPCGPCSEI  D  
Sbjct: 120 PKERLYATVYQDDDESFQIWKEQTDINPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLT 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                G    +    R IE+WNLVF+Q+ +Q+      LPK  +DTGMG ER+  V+Q K
Sbjct: 180 PD-GSGKELVNVGDYRVIELWNLVFIQYNRQSDGHLEPLPKKHVDTGMGFERIVAVMQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
            +NYD D+F+ L     ++TG++Y    +  N +  RVI DH R+ +F ++DG +P+NEG
Sbjct: 239 GSNYDSDVFQPLFDKITEITGVRYGASLDAPNDIAMRVIADHARTLTFALSDGAMPSNEG 298

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ Y+R LGY +P++  L+  L   MG  +PEL+Q +  +   +++E+E
Sbjct: 299 RGYVLRRILRRALRYSRNLGYHQPILHQLVGTLALAMGEVFPELVQRQEAVSAIIKAEEE 358

Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TLDRG+ L   ++  L     +++ G  AF+LYDT+G P D+ + +    G   +D
Sbjct: 359 SFIVTLDRGIDLFSELVEKLRASNGKVIAGSDAFRLYDTYGFPFDLTRLMAADEGFE-VD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQ++RAR+          +   +       A+QF+GYD L  S        
Sbjct: 418 GEGFEHCMQEQKNRARSDRREKQRVDDDGAKWQWFSDVRASQFVGYDHLVHS-------- 469

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          + +  I Q            K+ +V D TPFYAE+GGQ GD G  
Sbjct: 470 ---------------ATITGIRQGN---------GKLLLVLDATPFYAESGGQTGDNGWL 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIV------------ERGILRTEMSLVLTIDYQNRRQ 582
                RL + D  K  + I    +              +  I+  E+++  ++    R+ 
Sbjct: 506 ENSRYRLHVADTVKDGDAIVHVVSDAFDKVQDSAVQPEDVEIVEQELAVAASVHRTARQD 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHL+H AL  ILG HV Q GS ++P+ LRFD +H   +T  E++++E  VN  
Sbjct: 566 AERNHTATHLMHAALRRILGEHVQQKGSFVSPERLRFDFSHFSKLTDEEIEAVEIAVNTQ 625

Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +  PVV    +  +DA+A GA A  G KY DRVRVV +        S  LCGGTHV +
Sbjct: 626 IREAEPVVKHADVLFDDAVAKGALAFFGDKYADRVRVVEIPG-----MSVELCGGTHVDN 680

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRV 760
            G I L  I+SE+S+ +G+RRIEA+TG+ A   L  +  +L+ +   LK      VV +V
Sbjct: 681 IGRIGLFKIISEASVASGVRRIEAVTGKAAEKLLWQEYRELQQIRQLLKAKGDEAVVEKV 740

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDA 815
             + +  ++L+   A+ +    VE L+       +++    ++  +   D + ++    A
Sbjct: 741 AGLMDSKKELEKELAESRAAALVEQLTAALQAAPEVSGCRVLAIEVKNNDGETMRQATMA 800

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           L+ K    + +L  +   K   V     E +     +A  L R +AK + GGGG G+   
Sbjct: 801 LRDKAPCAVGLLATVEAGKVVLVSFATDEAVRTCSLDAGALIREAAKQVQGGGG-GKAEF 859

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A +GG       +A+    + ++
Sbjct: 860 ATAGGKQPENLSKALDAFTAAVR 882


>gi|315022567|gb|EFT35594.1| alanyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
 gi|325335524|gb|ADZ11798.1| Alanyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 867

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 508/918 (55%), Gaps = 75/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQQIRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKREAIAFAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D+EA+  WK    ++ D+I+     DNFW M E+GPCGPCS
Sbjct: 121 KENLYVTIFEGDATENLERDQEAYNCWKSY--IAEDRILNGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +++  + IE+WNLVFM+F ++       LP   +DTGMG
Sbjct: 179 EIHIDLRSEEEKSKVSGKDLVNQDHPQVIEVWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFL 285
            ER+   LQ KT+NYD D+F  LI   EQ++  KYEG       +  RV+VDH+R+ SF 
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIAKVEQLSHKKYEGLLDNEKDIAIRVVVDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y+ R L   E  +  L+  L  +MG+ +PE+ + +
Sbjct: 299 IADGQLPSNTGAGYVIRRILRRAISYSYRFLDMKEAFLYELVAVLKNQMGAFFPEIEKQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++ E+  F KT++ GLV L+ ++       ++ L G   F+LYDT+G P D+ +
Sbjct: 359 KLVTEVIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSR 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +GL  +D   F++ +E+Q+ R++  S        +K++  +  K     F+GYD 
Sbjct: 419 IIAEEKGLT-VDEKGFDEEMEKQKQRSKKSSA-------QKVYDWVTLKDETESFVGYDQ 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L    F+ + RK+                            E   G   +VVF+QTPFYA
Sbjct: 471 LEHKVFITKYRKL----------------------------ENKDGVFYQVVFNQTPFYA 502

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G    +  + ++ D +K+     ++ ++++      E      +D + RR 
Sbjct: 503 EGGGQVGDKGYIESEEGQFEVLDTKKENN---LNISLIKDLPQAPEKEFTAVVDSRLRRN 559

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHLLH AL  +LG+HV Q GS +  D LRFD +H   ++  E+  +E+ VN  
Sbjct: 560 TQANHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAK 619

Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+ +     +  ++A+  GA AL G KY D VR++          S  LCGGTH  S
Sbjct: 620 IKENISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHAKS 673

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI L  IVSESS  AGIRRIEAI+ ++A ++    +E++  L+  LK    +V   VE
Sbjct: 674 TSEIGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVE 731

Query: 762 EIWEEYRKL--QLIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817
           ++ EE +KL  +L   K++L  N      ++    +   +   ++ +D+  +K ++  L+
Sbjct: 732 KLLEENQKLKSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K++ + +I+++  + + K  + + V++DL D +NA  + +  AK + GGGG G P  A +
Sbjct: 792 KEVPTSVIVILSDAND-KPMISVGVSDDLGDSYNAGVIVKELAKEIQGGGG-GNPGFATA 849

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N     +A     S 
Sbjct: 850 GGKNLEGLPKAYEKAQSL 867


>gi|312870710|ref|ZP_07730817.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
 gi|311093722|gb|EFQ52059.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a]
          Length = 877

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/916 (36%), Positives = 507/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 416 GLA-VDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 471 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 509 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 568 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 628 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 683 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 743 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 803 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N     +A+  V + L
Sbjct: 862 NPAGLAKALETVLNEL 877


>gi|312873707|ref|ZP_07733752.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|325911933|ref|ZP_08174336.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D]
 gi|311090705|gb|EFQ49104.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d]
 gi|325476235|gb|EGC79398.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D]
          Length = 877

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/916 (36%), Positives = 507/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 416 GLA-VDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 471 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 509 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 568 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 628 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 683 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 743 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 803 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N     QA+  V + L
Sbjct: 862 NPAGLAQALETVLNEL 877


>gi|33519641|ref|NP_878473.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus]
 gi|81666648|sp|Q7VQG3|SYA_BLOFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33517304|emb|CAD83689.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus]
          Length = 891

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/913 (38%), Positives = 517/913 (56%), Gaps = 53/913 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            ++  +R  FL+FF K  H+++PSSSL+P ND TL+FTNSGM  FK+IF G  KP Y+ V
Sbjct: 3   KSIDVVRQEFLDFFHKQEHQVVPSSSLVPKNDQTLLFTNSGMNQFKDIFLGLVKPSYKRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T Q+C+RAGGKHNDL+NVG T  H TFFEMLGNFSFG YFK+ AIQ AW+LLT    F 
Sbjct: 63  VTAQRCMRAGGKHNDLNNVGYTECHLTFFEMLGNFSFGDYFKDDAIQFAWELLTDSNWFG 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + ++++T + ED+E++ +W K  G+S  +I++I          DNFW M   GPCGPC
Sbjct: 123 LSKDKIWVTTHIEDDESYNIWVKQVGISTKRIVKIGNKNSDLYDSDNFWQMGNIGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D G  + G  PG  +  G RYIEIWNLVFMQF +Q       LP +S+DTGMGLE
Sbjct: 183 SEIFYDFGSDLKGKPPGYMQGLGSRYIEIWNLVFMQFNRQLNDRLIDLPMLSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  +LQ   +NY ID+FK+LI     +  +K   NN  +  VI DH+R+  FLI DG++
Sbjct: 243 RITAILQGVHSNYLIDVFKNLIVDISNIMKVKEYINN-RSLYVIADHIRACVFLIKDGVV 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEG+GYVLRRI+RR++ + R LG  +  +  L+  +   M      L   K LIE+ L
Sbjct: 302 PSNEGQGYVLRRIIRRSVRHGRKLGVNDIFLYKLVNLVIVHMNYVSNILYDQKDLIEQIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
            +E++ F  TL +GL LL+  L +L +D+IL+G++AF+LY T+G PL++ +DI C R + 
Sbjct: 362 FNEEKLFNNTLKKGLELLEKSLKNLNQDKILSGEIAFQLYTTYGFPLELTKDICCERNIK 421

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D + F+Q +  +R  ++   L         I  S   K   + F+GY           
Sbjct: 422 -VDQLEFDQIMLTERRNSK--RLSQFHKNFNNIILSSYAK--TSTFVGYK---------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGD 530
                             S + A++Q  E++ +     Q+  V+ D TPFY E+GGQ+GD
Sbjct: 467 -------------CFSCQSKIIALLQDNELINKMCDVDQESMVILDITPFYGESGGQIGD 513

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           +G   G+    ++ + +K  + I VH  ++  GI      +   ++   R+ +S+NHS+T
Sbjct: 514 SGYLKGECGVFKVKNTKKYGQ-IIVHIGVLISGIFLIGEQVFAQVNRLKRKDISVNHSST 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  ILGSHV+Q GS I     RFD +H   IT  ++  +E+ +N  I  NL V 
Sbjct: 573 HLLHSALLKILGSHVTQQGSLINDKYFRFDFSHYNAITITQINEVENLINQQIWDNLLVT 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             IM  E A   GA  LL  +Y ++VRV+ +     G  S  LCGGTHVS+T EI L  I
Sbjct: 633 ENIMLMESARNIGAIMLLHKQYTEKVRVIQI-----GDCSIELCGGTHVSNTNEIGLFII 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             E  I +G+RRIEA+T   A S +  + + ++++A   +    N++  + E    Y KL
Sbjct: 688 TKEFGIGSGVRRIEAVTKNAALSVIQNKKKLIQNIAQIAQSDDVNLLNVIHEFKARYEKL 747

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                    +  ++ +       + I +V  + + +  ++S  L  ++  L+  +QSGI+
Sbjct: 748 DREIKLLNSKQEIQKVLSLVREVYYIKNVRVLVNHVKNMESSSLFKMVKLLKHYLQSGIV 807

Query: 826 MLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +L+ I K   A ++I +T+DL+  +R  A+DL +   + +  G GGGR   AQ    N  
Sbjct: 808 VLINIRKNNIAHIVISITKDLVECNRIYAIDLIQYIIRSVKNGKGGGRFDFAQLNINNVK 867

Query: 884 KADQAIAGVASFL 896
              + +  + S L
Sbjct: 868 NVSELVIQIQSLL 880


>gi|325963401|ref|YP_004241307.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469488|gb|ADX73173.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/925 (35%), Positives = 498/925 (53%), Gaps = 65/925 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+  Y  
Sbjct: 1   MKS-QEITKRWVDFFVSKGHTAVPSASLVSS-DPSLLFTVAGMVPFIPYLTAREEAPYSR 58

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
             +VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT     
Sbjct: 59  AVSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTGVDD 114

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + LD  RL++TVY+ED+EA  LW K +G+ A++I ++  +DN+W   + GP GPCSEI
Sbjct: 115 GGYGLDPERLWVTVYEEDDEAKDLWLKNTGVPAERIQKMGKSDNYWHTGQPGPAGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           ++D+G    G   G   +  RYIEIWNLVFMQ++ +N + +        LPK +IDTG+G
Sbjct: 175 YYDRGPAY-GVEGGPLADETRYIEIWNLVFMQYQIENVRSKEDFDVVGELPKRNIDTGLG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           +ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+R
Sbjct: 234 MERLAMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETDEDPHHTDDVRMRVVADHIR 293

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  LI+DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +
Sbjct: 294 SALMLISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPELLPASRDAMKGVYPVV 353

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLD 399
                 I     +E++ F +T+  G   L+  +      ++ L+G+ AF L+DT+G P+D
Sbjct: 354 DTDFARISRIAYAEEKAFLRTIASGTARLEDAVRESKAANKPLSGEDAFTLHDTYGFPID 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    GL  +D  +F   ++EQR RA+A + G   G  +   F      G T F G
Sbjct: 414 LTLEMAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQELLGQGETVFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L G                        S V+ I+  G  V++A +G ++E+V  +TP
Sbjct: 473 YSELDG-----------------------ESRVRGILTGGRPVQQASTGDEIELVLAETP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + 
Sbjct: 510 FYAEAGGQAADTGLITGDGFVVEVLDVQRPLKGLSVHKAIVREGEIGADSLVRAAVDRER 569

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  
Sbjct: 570 RHAAEQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVS 629

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V T++M   +A A GA AL G  Y + VRVV ++    G  S  LCGGTHV
Sbjct: 630 NLAIRNNYAVDTKVMPLAEAKALGAMALFGENYGNEVRVVEID----GAWSRELCGGTHV 685

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R
Sbjct: 686 SNTSLIGSLSLLGEQSVGSGNRRVEAFVGMDAFRHLAAERALVTELTEMLKVPSGQLADR 745

Query: 760 VEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVD-SKELKSVM 813
           +     + +  +       K +L  +   L  +      V+ ++H   +V  + +++ + 
Sbjct: 746 IATTLAKLKATEKELDRLRKEQLAASAAQLVSTATDAGGVSVIAHDAGQVSGADDIRGLA 805

Query: 814 DALQKKIQSGI--IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             L+ ++ SG   + + G+S ++   ++            A  L RL+A +LGGGGG G+
Sbjct: 806 LDLRNRLGSGAATVAVAGVSNDRPVILVATNEAAREAGVKAGALVRLAAGILGGGGG-GK 864

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
             +AQ GG +  K  QA+A V   +
Sbjct: 865 DDVAQGGGTDAGKVPQALAAVVDAI 889


>gi|295692276|ref|YP_003600886.1| alanyl-tRNA synthetase [Lactobacillus crispatus ST1]
 gi|295030382|emb|CBL49861.1| Alanyl-tRNA synthetase [Lactobacillus crispatus ST1]
          Length = 879

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 495/918 (53%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T  K  G    +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL +D + R  L  +
Sbjct: 508 ADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLI-LPVEKGQEYVLKLDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        ++N            +  D+  ++         +L+ + D  +   
Sbjct: 742 DLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A +L +++A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENAGKANMIIALGQKALDKGLKAGNLIKIAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
           N    + AI  V   + K
Sbjct: 861 NPAGLNDAIKAVIDEISK 878


>gi|28378871|ref|NP_785763.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1]
 gi|38258328|sp|Q88V10|SYA_LACPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28271708|emb|CAD64614.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1]
          Length = 880

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 505/919 (54%), Gaps = 67/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FF + GH ++PS+SL+P +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSSEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDNPRMT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVGRT RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F  
Sbjct: 65  SSQKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGW 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A K W + +G+  D II++   DNFW + + GP GP SEIF+D+G
Sbjct: 121 DPDKLYMTVYPKDTDAAKFW-EATGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRG 176

Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E         P   PG   E ERY+E+WN+VF QF    +     LP+ +IDTGMGLER+
Sbjct: 177 EAFNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290
            +V Q    N++ DLF  +I  +E+++  K+ G+   + V+ +VI DH R+ +F I+DG 
Sbjct: 235 VSVFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M S YP++++    IE+ 
Sbjct: 295 LPSNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKI 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE+ RF +TL+ GL LL+ +++   +   + L G  AFKLYDT+G P ++ ++     
Sbjct: 355 VASEESRFNETLNDGLNLLNNLIAETKQTGHDTLAGKDAFKLYDTYGFPFELTKEYAGDE 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D   F   ++ QR RAR       S   ++    L +    ++++GYD L     
Sbjct: 415 DL-DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSL--LIDIKTPSEYVGYDEL----- 466

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              V   +  I+    +V+   SGQ  E++F +TPFYAE GGQ+
Sbjct: 467 -----------------TNVQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQV 508

Query: 529 GDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G  + D      ++TDVQ       +H   V +  +R + +  L +D     ++  N
Sbjct: 509 ADRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLK-PMRKDATYTLNVDLAFHNKVEKN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL  AL  +LG H  Q GS + PD LRFD TH   +T  EL  +E  VND I   
Sbjct: 568 HTATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAA 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV     ++E     GA A+   KY   VRVVS+     G +S    GGTHV ++ E+ 
Sbjct: 628 LPVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           L  IVSE+ I AG RRIEA+T + A   L G+++ LK +A+ +K  +  +   +V ++  
Sbjct: 683 LFKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQA 742

Query: 766 EYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
           + +  Q   A  + +L          ++ DVN  + I  +++     +L+ + D  + K 
Sbjct: 743 DLKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQ 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            S +++L  +  E K ++L+ V++D +     A DL +  A  +GGGGG GRP +AQ+GG
Sbjct: 803 YSDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVGGGGG-GRPTLAQAGG 860

Query: 880 PNGNKADQAIAGVASFLKK 898
                   A+     +L +
Sbjct: 861 KKPAGLPVALKAAHEWLAE 879


>gi|124024525|ref|YP_001018832.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|123964811|gb|ABM79567.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str.
           MIT 9303]
          Length = 930

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/913 (36%), Positives = 506/913 (55%), Gaps = 56/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ +      T
Sbjct: 54  TGSEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRAT 112

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ 
Sbjct: 113 SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNP 168

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 169 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPD 228

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 229 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 287

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ D+   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 288 NYETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 347

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           ++RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF 
Sbjct: 348 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 407

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 408 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 464

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+++QR RA+A ++ +   T +     +  +  AT+F GY +L                
Sbjct: 465 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFKGYQVLEQPC------------ 511

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                       V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G   G+G 
Sbjct: 512 -----------CVLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGEGS 560

Query: 539 ---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +   D   +   +FVH   +ERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 561 GGNGVIVAVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 620

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++ S + Q GS +  D LRFD   S+ +T+ EL+ IE  +N  I ++  ++   M+
Sbjct: 621 ALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVEEMS 680

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA A+ G KY D VRVV          S  LCGGTHV++T EI L  IV+ESS
Sbjct: 681 IQEAKAAGAVAMFGEKYADVVRVVD-----VPGVSMELCGGTHVANTAEIGLFKIVAESS 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +D  +K L    K     ++ RV  + EE +  Q    
Sbjct: 736 VAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQKALT 795

Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V            + +   +   +  V+   L++    L  ++     +++G 
Sbjct: 796 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDATAVVLGG 855

Query: 831 ----SKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               S E K  ++    + ++ +   A       AK  GGGGG GRP++AQ+GG +G   
Sbjct: 856 LPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGGG-GRPNLAQAGGRDGAAL 914

Query: 886 DQAIAGVASFLKK 898
           D A+      LK+
Sbjct: 915 DGALEAAKVELKQ 927


>gi|311739532|ref|ZP_07713367.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305348|gb|EFQ81416.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 897

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/926 (35%), Positives = 489/926 (52%), Gaps = 68/926 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--V 61
              IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +     
Sbjct: 6   THEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKGLA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 65  TSIQKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVDEG 120

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 121 GFGLDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSEIY 180

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERF---ILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+EIWNLVFMQ E+     K        LPK +IDTG+G+
Sbjct: 181 YDRGPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGLGI 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLI 286
           ER+A +LQ+  N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   LI
Sbjct: 240 ERVACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMMLI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +  
Sbjct: 300 LDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNRER 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDI 400
           I     +E++ F KTL+ G  L D  +  L         ++L G+ AF+L+DT+G P+D+
Sbjct: 360 ILRVAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPIDL 419

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F G+
Sbjct: 420 TLEMAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGF 478

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           + L                          + V  +V+ GE V++   G++VEV+ D TP 
Sbjct: 479 EELTSD-----------------------ARVIGLVRGGEKVDQVREGEQVEVILDHTPL 515

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAEAGGQ+ D G  +     L++ DVQK  + ++VH A V  G L   MS+   +D Q R
Sbjct: 516 YAEAGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQWR 575

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I    N
Sbjct: 576 HGATQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALITN 635

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  N  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+
Sbjct: 636 QAIDSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTHVA 691

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  R+
Sbjct: 692 SSAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERI 751

Query: 761 EEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHII----SEVDSKELKSVM 813
            ++ E+ +  +       K++L     +       D+N    I           +L++V 
Sbjct: 752 AQLSEKLKAAEKEIETLRKQQLAARASEFVGA-AKDINGFKVIALTLPEGTTGGDLRTVA 810

Query: 814 DALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             L+ ++  +  +I+L    K K   +     + +     + D+ +   + +  G GGG+
Sbjct: 811 TDLRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGGK 869

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLK 897
           P MAQ  G     A++  A V   L+
Sbjct: 870 PDMAQGSGSTAAGAERGFAAVKDMLE 895


>gi|309805316|ref|ZP_07699367.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
 gi|308165392|gb|EFO67624.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c]
          Length = 877

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/916 (36%), Positives = 507/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDIDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 416 GLA-VDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 471 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 509 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 568 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 628 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 683 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 743 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 803 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N     +A+  V + L
Sbjct: 862 NPAGLAKALETVLNEL 877


>gi|78778092|ref|YP_394407.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|78498632|gb|ABB45172.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
          Length = 851

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/895 (37%), Positives = 495/895 (55%), Gaps = 52/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL FF+   H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+   P      + 
Sbjct: 4   DIREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSC 62

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T      + +
Sbjct: 63  QTCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEK 122

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  LW  +  +S D+I+R+   DNFW M +TGPCGPCSEIFFDQG E  
Sbjct: 123 LWVTVHESDDEAEALW--LRHVSIDRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKF 180

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + +  ++N
Sbjct: 181 SGPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSN 240

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y   LF  +I+  E +   +Y      ++RVI DH+R+S FL+A G+  +NEGRGYVLRR
Sbjct: 241 YSSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRR 300

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG++EP M  L+  +   MG  Y  L Q    ++E +  E+ RF KT+ 
Sbjct: 301 ILRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIA 360

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L +    +I +G VAFKLYDT G PLD+ +D+L  + L  +D   F + ++
Sbjct: 361 SGIELFNAELHNTK--DIFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQRSRA+A   G G       +  L EK+    F+GY+  +                   
Sbjct: 418 EQRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYESTKQK----------------- 460

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S ++  + +     ++  +G    V  D TPFYA++GGQ GD G         ++
Sbjct: 461 -----SRVLALLDESYHHADKLSAGVNGWVFLDTTPFYAQSGGQCGDIGEL---NGFAKV 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  KK  G+ +     E+  L+    +   +D   R +++ +HSATHLLH  L  +LG 
Sbjct: 513 LDT-KKFFGLNLSQISTEK-ELKVGDEVEAVVDIS-RGEITKHHSATHLLHAVLFDVLGD 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +    LRFD +H K I++ EL  IE  VN  I + +   T +M+ ++A  SG
Sbjct: 570 HISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKSG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A  G KY D VRVVS      G  S   CGG HV ++  I    I  ES + AG+RRI
Sbjct: 630 AKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A ++   Q E L+ +   +K    +++  V  +     +L+      +  +  
Sbjct: 685 EAVCGNAAFNYFSEQRELLREVEHEVK--NLDILAGVARLKSNIVELKKELHDAESCIKT 742

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           +     KI  +N +S ++ E+ S ++K  +D L+ + +S   +L  + K+ K  +   V 
Sbjct: 743 D----IKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQV-KDDKVMMAAGVK 797

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   A D  +  A +LGGGGG GR   AQ+GG + +K  +A      ++ +
Sbjct: 798 ---GSDAKAGDWIKHIAPLLGGGGG-GRADFAQAGGKDISKLSEAKIEALRYITE 848


>gi|255325071|ref|ZP_05366177.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297636|gb|EET76947.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 894

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/928 (35%), Positives = 487/928 (52%), Gaps = 68/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA- 60
                IR  F + F  +GHE +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MKTHEIRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKG 59

Query: 61  -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  LATSIQKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVD 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGFGLDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERF---ILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFMQ E+     K        LPK +IDTG+
Sbjct: 176 IYYDRGPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSF 284
           G+ER+A +LQ+  N Y+ DL + +I  +E++TG  Y       + +  RV+ DH R+   
Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMM 294

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NEGRGY+LRR++RR +  A+LLG     M   +  +   M  +YPE+   +
Sbjct: 295 LILDGVTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNR 354

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPL 398
             I     +E++ F KTL+ G  L D  +  L         ++L G+ AF+L+DT+G P+
Sbjct: 355 ERILRVAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++    GL  +D+  FN A+ EQR RA+A +     G T+   +        T F 
Sbjct: 415 DLTLEMAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFT 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G++ L                          + V  +V+ GE V++   G++VEV+ D T
Sbjct: 474 GFEELTSD-----------------------ARVIGLVRGGEKVDQVREGEQVEVILDHT 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P YAEAGGQ+ D G  +     L++ DVQK  + ++VH A V  G L   MS+   +D Q
Sbjct: 511 PLYAEAGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQ 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R   +  HSATHL+H AL  +LG    Q GS   P  LRFD  +++ ++ A+L+ I   
Sbjct: 571 WRHGATQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALI 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  I  N  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTH
Sbjct: 631 TNQAIDSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V S+ EI  + ++ ESS+ +G RRIEA +G  A  +   +   ++ ++  LKV   ++  
Sbjct: 687 VGSSAEIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPE 746

Query: 759 RVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHII----SEVDSKELKS 811
           R+ ++ E+ +  +       K++L     +       DVN    I           +L++
Sbjct: 747 RIAQLSEKLKAAEKEIETLRKQQLAARASE-FVSAAKDVNGFKVIALTLPEGTTGGDLRT 805

Query: 812 VMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           V   L+ ++  +  +I+L    K K   +     + +     + D+ +   + +  G GG
Sbjct: 806 VATDLRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGG 864

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P MAQ  G     A++    V   L+
Sbjct: 865 GKPDMAQGSGSTAAGAERGFEAVKDMLE 892


>gi|302190972|ref|ZP_07267226.1| alanyl-tRNA synthetase [Lactobacillus iners AB-1]
          Length = 877

 Score =  813 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/916 (36%), Positives = 506/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  +  Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 416 GLA-VDKEEFDAEMRAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 471 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 509 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 568 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 628 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 683 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 743 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 803 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N     +A+  V + L
Sbjct: 862 NPAGLAKALETVLNEL 877


>gi|149640710|ref|XP_001506284.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 2
           [Ornithorhynchus anatinus]
          Length = 963

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/968 (33%), Positives = 485/968 (50%), Gaps = 91/968 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           + S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  ++     L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            DL    +   +  K   +           S VKA+ ++   V+E  +GQ+  VV D+T 
Sbjct: 476 RDL----EVTDDSPKYNYRANASGSYGRFPSTVKALRREKTFVDEVSTGQECGVVLDKTC 531

Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G  + D        + +VQ +  G  +H   V  G L+    + L ID
Sbjct: 532 FYAEQGGQIFDEGYLVKDDDGSEDFTVKNVQVR-GGYVLHIGTV-YGNLKVGDQVRLFID 589

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K  E
Sbjct: 590 EPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQEIKKTE 648

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YE 684
           +  N +I    PV  +      A A  G  A+    Y D VRVVS+              
Sbjct: 649 EIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELLEDPSSP 708

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK--- 741
            G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+  L   +     
Sbjct: 709 AGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKALRKAESLKTA 768

Query: 742 LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHK 790
           L  L + +K       +V   + ++ E        ++ K +L  A + L+  ++DL    
Sbjct: 769 LSVLEAKVKAQTAPNKDVQKEIADLGETLATAVVPQWHKDELREALKALKKIMDDLDRAS 828

Query: 791 IADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            ADV                     +  + S   +K L   +   +        ML  + 
Sbjct: 829 KADVQKRVLEKTKQLIESQPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVD 888

Query: 832 KE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            E  K + L  V ++  ++   A +  +  +  L  G GGG+   AQ+ G N     +A+
Sbjct: 889 NEAGKITCLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLPEAV 947

Query: 890 AGVASFLK 897
               SF +
Sbjct: 948 QLATSFAQ 955


>gi|297564703|ref|YP_003683675.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849152|gb|ADH62167.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 894

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/933 (35%), Positives = 502/933 (53%), Gaps = 87/933 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
              + IR  +L+FFQ  GH  LPS S+IP +DP+L+F N+GM P K  F G+    +   
Sbjct: 3   MTTAEIREKYLQFFQSKGHLRLPSFSVIPQDDPSLLFINAGMTPLKPYFLGKTPIFHTPE 62

Query: 60  ------AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
                  VTT QKCVR G    D++NVGRTNRH T FEMLGNFSFG YFK+ AI  AW+ 
Sbjct: 63  GEKISYRVTTCQKCVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAILWAWEF 118

Query: 114 LTK--EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAET 166
           LT      L+  R+Y+T+Y+ED+EAF+ W +  GL  +++ R   ++NFW     S    
Sbjct: 119 LTDKRWLGLEPERIYVTIYEEDDEAFEYWTQDVGLPPERLHRFGADENFWPADAPSKGPN 178

Query: 167 GPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           GPCGPCSEI++D+G             + E  R++EIWNLVF Q+++++      LPK +
Sbjct: 179 GPCGPCSEIYYDRGPEFGADTWADYYQTRESNRFVEIWNLVFPQYDRKDGGILEPLPKPN 238

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGL R+A VLQ  T+ Y+ D FK +I    +++G+ YEG + + HRVI +H R+ S
Sbjct: 239 IDTGMGLARVAMVLQGVTDFYETDEFKPIIAKVVELSGVSYEGPSSLAHRVISEHARAVS 298

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           F+++DG   +N GRGYV+RR++RRA+ Y  LLG  EP M  L   +   MG  YPEL + 
Sbjct: 299 FILSDGATFSNTGRGYVVRRLLRRAVRYGYLLGLREPFMHRLAAVVAEVMGGVYPELREN 358

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              +++ +R E+ERF +TL++G+  LD +LS L   + L+G+ AF+LYDT+G PLD+  +
Sbjct: 359 LESVQKQIRLEEERFFETLEQGVERLDALLSGLEPGDTLSGEEAFRLYDTYGFPLDLTLE 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYD 461
           I   RG+  +D   F +ALEE +  AR  +           +   ++    G T F+GY+
Sbjct: 419 IADERGIK-VDTEGFQKALEEAQELARQRAAFDKDVFKRPNEALLAIARDSGGTVFVGYE 477

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                      ++ VK ++   + ++EA +G +V+VV D+TPFY
Sbjct: 478 RTE-----------------------ETAQVKLLLAGNQSLDEAPAGTEVQVVLDRTPFY 514

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE GGQ+GD G     G   +++  QK  +GI++H A VE G L+   ++   +D   R 
Sbjct: 515 AEGGGQIGDFGVLEWAGGWAKVSTTQKNPDGIYLHLAKVEEGTLKAGTTVRALVDPHRR- 573

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               NH+ATHLLH AL  ILG+HV Q GS + PD LRFD TH +P++  EL  IE  VN 
Sbjct: 574 DTEKNHTATHLLHAALRAILGTHVRQAGSYVGPDRLRFDFTHPEPVSPRELARIELLVNR 633

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGG 696
            I  + PV       E+A   GA AL G KY D VRVV+VE     V      S  LCGG
Sbjct: 634 WIQGDFPVSYTYKPLEEAKKEGAMALFGEKYADVVRVVAVEGTADNVAAGTAISKELCGG 693

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV  TGEI +  I  E ++ +G+RRIEA+TG  A  ++    + L++L+  L V+   +
Sbjct: 694 CHVRRTGEIGMFVIRFEEAVSSGVRRIEALTGTGAVQYVRENLDVLQALSRELGVNPEGL 753

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELK 810
             R+ ++  E +  +    + + +L    L         +     +++  +  ++   L+
Sbjct: 754 PERLGKLQNEIKAREKEIERLRRELARAQLGGGTASALKEAGGYQYLAVRLEGLEVGALR 813

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAK-------- 861
           S  D L  K ++ ++ +         +++I ++++      +A  + +   +        
Sbjct: 814 SAADELLDKHKADLVAV-----GSGQNLVIKLSKEAQAKGLDAGAVMKRLTEAAGGRGGG 868

Query: 862 --VLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              L            Q GG +  +A  A+ G 
Sbjct: 869 KGALA-----------QGGGFDLERAFAALEGA 890


>gi|86134548|ref|ZP_01053130.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821411|gb|EAQ42558.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 873

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/920 (36%), Positives = 503/920 (54%), Gaps = 73/920 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR TFL+FFQK  H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    
Sbjct: 1   MKS-QDIRATFLDFFQKKSHLVVPSAPMVTKDDPTLMFVNSGMAPFKEYFLGNATPKKNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +
Sbjct: 60  ITDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKI 119

Query: 121 DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D+  LY+TV++  E         EA+ +WK+   ++ D+I++    DNFW M E GPCGP
Sbjct: 120 DKDILYVTVFEGSEDADQLNMDTEAYDIWKEY--IAEDRILKGNKKDNFWEMGEQGPCGP 177

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D    + +    G    +E+  + +EIWNLVFMQ+ ++       LP   IDTG
Sbjct: 178 CSEIHVDIRSAEEKAKLDGRTLINEDHPQVVEIWNLVFMQYNRKANGTLEELPNKHIDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285
           MG ER+  VLQ   +NYD D+F  +I+    +T   Y  N    +  RVI DH+R+ +F 
Sbjct: 238 MGFERLCMVLQNVQSNYDTDVFTPIIREIGTITNTSYGKNEKQDIATRVISDHVRAVAFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K
Sbjct: 298 IADGQLPSNTGAGYVIRRILRRAVRYGFTFLNKKEPFIYRLVSILSDKMGKAFPELKSQK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LIE  ++ E+  F +TLD+GLVLLDG++ +  K + ++GD  F+LYDT G P+D+   I
Sbjct: 358 QLIENVIKEEETSFLRTLDQGLVLLDGIIEN-SKSKEISGDKVFELYDTFGFPIDLTALI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +G   +D   F + L++Q++R+RA S       T  I  +++E      FIGYD L 
Sbjct: 417 LSEKGYT-LDEKGFEEELQKQKNRSRAASEMSTDDWTILIDDAVEE------FIGYDFLE 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  +   RKV  +K                            G+  ++VF+ TPFY E 
Sbjct: 470 ANVKLTRYRKVTSKK---------------------------DGEMYQLVFNLTPFYPEG 502

Query: 525 GGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G      G  + I D +K+   + +H A  +      + +    +D + R + 
Sbjct: 503 GGQVGDKGYLEDTHGDVVYILDTKKE-NNVIIHFA--KNLPQNLDANFKAVVDEKQRYRT 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T+ EL+ +E+ VN  I
Sbjct: 560 ECNHTATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKLTTEELQDVENFVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  LP+   R +  E AIA GA AL G KY D VR +          S  LCGGTHV +T
Sbjct: 620 SGKLPLEESRNITMEKAIADGAMALFGEKYGDTVRAIKFGK------SIELCGGTHVKNT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I SE ++ AGIRRIEAIT    +      +  L  +   L  +  N V  V++
Sbjct: 674 GDIWHFKIKSEGAVAAGIRRIEAITNDAVKDFYFDNNRTLFEIKDLLN-NTKNPVKAVQK 732

Query: 763 IWEEYRKLQL--IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQK 818
           + +E  +LQ       ++   N+     +++ ++N +  + ++V  D+  +K++  +L K
Sbjct: 733 LQDENTELQKQVEQLLKEKAQNLSGEIKNQLQEINGVQFLATKVDLDANGIKNLAFSLGK 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + Q+  ++       +KA +   ++++L +   +NA  + R   K++ GGGG G+P  A 
Sbjct: 793 EHQNLFLLFASAPSNEKALLTCYISKELANERGYNAGTVVRELGKLIHGGGG-GQPFFAT 851

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N     +A+     +L
Sbjct: 852 AGGRNPGGIPKALEKAKDYL 871


>gi|145594371|ref|YP_001158668.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|205830200|sp|A4X5Z0|SYA_SALTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145303708|gb|ABP54290.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440]
          Length = 892

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/928 (34%), Positives = 496/928 (53%), Gaps = 72/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L  F+ NGH ++PS+ L   +DP L+F  +GM+ F   F GQ+   Y+  
Sbjct: 1   MKTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAW+L TK     
Sbjct: 61  VSVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWELSTKPVDAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  R++ TVY +D+EAF++W+ + G+ AD+I+R    DNFWSM   GPCGPCSE+F
Sbjct: 117 GLGLDPDRIWPTVYLDDDEAFQIWRSV-GVPADRIVRRGKADNFWSMGIPGPCGPCSELF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQFE+     +        LP  +IDTGMGL
Sbjct: 176 YDRGPEY-GREGGPEVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----------NNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + ++  + ++TG +Y             + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILAKAAELTGKRYGAHSGQVASESHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG++P+NEGRGYVLRRIMRRA+   RLLG+ E  M  LLP     M ++YPEL
Sbjct: 295 TALMLIGDGVIPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSASYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPL 398
                 I +   +E++ F  TL  G  +LD  ++         ++G  AF+L+DT+G P+
Sbjct: 355 ATDFGRIADYAYAEEDAFLSTLRAGTTILDTAIAETRTAGRRAISGAKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QR+RA+A +    +G  +   + ++ ++ G   F
Sbjct: 415 DLTLEIASEQGL-QVDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  +                          S V+A++        AV G+ VE+V D 
Sbjct: 474 TGYQEV-----------------------SRESTVRAVLGAASPHAAAVEGETVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRVGETGFAEIDT 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L+ +E 
Sbjct: 571 DRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ +  +L V   + +  +A   GA AL G KY ++VRVV V     G ++  LCGGT
Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V 
Sbjct: 686 HVGRSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + QL          + ++V  ++++           ++++
Sbjct: 746 ERVEQTVTQLRDAEKELEKLRAQLVLGGAAALAAQASEVRGVAYVGTEAPEGAAGNDVRT 805

Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGG 868
           +   ++ +I      ++ V      KAS+++ V         +A DL +++      G G
Sbjct: 806 LAQEIRSRIDPARPAVVAVAARANGKASLVVAVNPAARSQGLSAADLVKVAFA----GRG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG P +AQ GG    +A   +  V + +
Sbjct: 862 GGSPELAQGGGLPAAEAPGLLRTVENAI 889


>gi|289643307|ref|ZP_06475431.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289506881|gb|EFD27856.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 894

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/922 (35%), Positives = 496/922 (53%), Gaps = 63/922 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + I + +L +F   GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+  P Y  
Sbjct: 1   MKS-AEIASRWLRYFADRGHTVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGEVAPPYSR 58

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
             +VQKCVR      D++ VGRT RH +FF+M GNFSFG YFKE  I LAW+LLT     
Sbjct: 59  AASVQKCVRT----TDIEEVGRTTRHGSFFQMCGNFSFGDYFKETVIPLAWELLTTPVAD 114

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L + RL++TVY +D+EA  +W    G+  D+I R+   DNFWSM   GPCGPCSEI
Sbjct: 115 GGYGLAEDRLWVTVYLDDDEAADIWHSKIGVPTDRIQRLGMEDNFWSMGVPGPCGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMG 229
            +D+G    G   G +  GERY+EIWNLVFMQ+ +     +        LP  +IDTG+G
Sbjct: 175 NYDRGPEF-GAEGGPAVNGERYLEIWNLVFMQYIRGEGSSKKDYPILGDLPSRNIDTGLG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
           LER+AT+LQ   N Y+ID  + ++  +  +TG +Y   +   V+ RV+ DH+R+S  LI 
Sbjct: 234 LERLATILQGVDNLYEIDTSRVILDRTSALTGARYGAEHRSDVSLRVVADHVRTSVMLIG 293

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+LP NEGRGYVLRR+MRRA+   RLLG  +  M  ++ A    MG  YPEL+  ++ I
Sbjct: 294 DGVLPGNEGRGYVLRRMMRRAIRNMRLLGAHDATMHEMVEATIEAMGPQYPELVTDRVRI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           +    +E+  F +TL  G  + D   S   K    ++ G+  F+L+DT+G P+D+  ++ 
Sbjct: 354 DSVATAEEAAFLQTLRTGTSIFDLAASETKKAGGSVIPGERVFQLHDTYGFPVDLTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLR 464
              GL  +D   F + + EQR RA+A +    +G  +   +  +    G + F GYD   
Sbjct: 414 AETGLT-VDEEGFRRLMTEQRQRAKADARAKKTGHVDTSAYRDVLAAAGPSAFTGYDS-- 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V+ ++  G    EA  G  VE+V D+TPFYAE 
Sbjct: 471 ---------------------GAEEARVRGLLVGGAAAREAAQGDDVEIVLDRTPFYAEG 509

Query: 525 GGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   + DG  ++I DVQK    + VH   V  G +     +   ID   R  +
Sbjct: 510 GGQLADAGVIRLADGTEIEILDVQKPLPELIVHRGRVRTGEVTLGADVQAEIDPARRAAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S +HSATHL H AL   LG   +Q GS  +P   RFD + +  +  + L  +E+ +N ++
Sbjct: 570 SRSHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFSAAAAVPPSVLADVEETINQVL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            ++L V   +M+ + A  +GA A+ G KY+DRVRVVS+     G +S  LCGGTHV  +G
Sbjct: 630 TEDLDVHAEVMDIDQARRTGAIAMFGEKYSDRVRVVSI-----GDYSRELCGGTHVRRSG 684

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ E+S+ AG+RR+EA+ G  A  +L  +   +  +   LK  + +V  R+ ++
Sbjct: 685 QLGLVKLLGEASVGAGVRRVEALVGLDAYRYLAREAVLVSQITDVLKAPRADVPERLSQV 744

Query: 764 WEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKSVMDALQ 817
               R+ +    K +    L +         DV   + +         + +L+ +   ++
Sbjct: 745 LGRLREAEKELEKLRAAQVLAIAGDLARAAEDVGGTALVTHRAADGTSADDLRKLAIDIR 804

Query: 818 KKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
            ++ +    ++ V  +   +  ++        +R   A +L R +AK+LGGGGG G+  +
Sbjct: 805 GRVPADRPAVVAVAAAASGRPVIVAATNGPARERGIRAGELVRGAAKILGGGGG-GKDDL 863

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ GG N +    A+ GV   +
Sbjct: 864 AQGGGSNPDAIADALVGVRQAV 885


>gi|256844557|ref|ZP_05550043.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
 gi|256613635|gb|EEU18838.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN]
          Length = 879

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 496/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL +D + R  L  +
Sbjct: 508 ADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLI-LPVEKGQEYVLKLDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        ++N            +  D+  ++         +L+ + D  +   
Sbjct: 742 DLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A +L +++A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENAGKANMIIALGQKALDKALKAGNLIKIAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
           N    + AI  V   + K
Sbjct: 861 NPAGLNDAIKAVIDEISK 878


>gi|331697330|ref|YP_004333569.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952019|gb|AEA25716.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 887

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/921 (36%), Positives = 490/921 (53%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F + F   GH  + S+SLI  +DPTL+F N+GMV FK  F G     Y   
Sbjct: 1   MQTHEIARRFTDHFTGTGHTRVASASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR G    D+D VGRT RH+TFF+M GNFSFG YFKE AI+ AW L+T      
Sbjct: 60  TSIQKCVRTG----DIDEVGRTTRHNTFFQMAGNFSFGDYFKEGAIEHAWRLITSSTSDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R+++TV+ +D+EA  LW++I+G+ A++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGLDPDRIWVTVFHDDDEAAGLWQRIAGIPAERIQRRGMADNYWSMGVAGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFM+ E+     +        LP  +IDTG+G+
Sbjct: 176 YDRGPQY-GREGGPVVDEDRYLEIWNLVFMEKERAAGGTKDDFPIIGELPAKNIDTGLGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G +Y     + V  RVI DH RS   +I D
Sbjct: 235 ERVAYLLQGVDNVYETDLVRPVITRAEELSGRRYGASHEDDVRFRVIADHARSGVMIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N+GRGYVLRR++RR +  +RLLG  EP++      +  EM  +YPEL+     I 
Sbjct: 295 GVTPSNDGRGYVLRRLLRRIVRSSRLLGVQEPVLGAFAEVVRDEMAPSYPELVTDFERIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             +R+E+E F +TL  G  + D  ++         L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 AVVRAEEEAFLQTLTAGSRIFDVAVADTRRAGGTTLAGDQAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GL  +D   F   + EQR+RA+A +    +G  +  ++  L + +G T F+GY  L  
Sbjct: 415 EAGLT-VDQDRFAALMTEQRTRAKADAAARKTGHHDGSVYRPLLDAHGTTTFLGYTELA- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                     V  +V  G  V  A  GQ+VEVV D+TPFYAEAG
Sbjct: 473 ----------------------AEGTVVGLVVDGAAVPAASEGQQVEVVLDRTPFYAEAG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G        ++I DVQ    G+ VH   VE G +  + ++V  +D   R  +S 
Sbjct: 511 GQQADHGVLRTGSAIVRIDDVQSPVAGLRVHRGTVEAGTVAVDDAVVAEVDVARRASISR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIA 644
            H+ATHL+H  +   LG+  +Q GS   P  LRFD T     + +A L  IE+ VN  + 
Sbjct: 571 AHTATHLVHAGVRGALGTAAAQAGSLNAPGRLRFDFTSPSGAVPAAALAEIEEEVNTKLQ 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N  V T   + ++A   GA  L G KY DRVRVV     D G +S  LCGGTHV+ TGE
Sbjct: 631 ENREVETYETSMDEARRLGAMMLFGEKYGDRVRVV-----DMGDYSRELCGGTHVARTGE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + ++ ++SE+SI +G+RR+EA+ G  A   +  +   L  ++  LK     +  R+  + 
Sbjct: 686 LGIVKVLSEASIGSGVRRVEALVGNDALRQVSTEHLLLSQISDQLKARPDELPDRIAALV 745

Query: 765 EEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           E  R  +    K +                 +A +  ++    + V   +L+++   ++ 
Sbjct: 746 ERLRTAERDLEKHRADAALGAAGALADGAEDVAGIALVAVAAPAGVSGNDLRALAADVRG 805

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++    G++ L G   + K S ++  T    DR   A  L    A  + GG GGG+P +A
Sbjct: 806 RLGDRPGVVALFGTDGD-KVSFVVATTAAARDRGLAAGKLIPAFAPAV-GGRGGGKPDLA 863

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG N      AIA + S L
Sbjct: 864 QGGGQNPAGVPDAIAALRSAL 884


>gi|309805990|ref|ZP_07700016.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|312872876|ref|ZP_07732938.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|325913725|ref|ZP_08176086.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B]
 gi|308167593|gb|EFO69746.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b]
 gi|311091610|gb|EFQ49992.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1]
 gi|325476925|gb|EGC80076.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B]
          Length = 877

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/916 (36%), Positives = 507/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 416 GLA-VDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 471 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 509 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 568 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 628 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 683 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 743 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 803 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N     +A+  V + L
Sbjct: 862 NPAGLAKALETVLNEL 877


>gi|205830242|sp|Q30PA9|SYA_SULDN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 849

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/895 (37%), Positives = 495/895 (55%), Gaps = 52/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL FF+   H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+   P      + 
Sbjct: 2   DIREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T      + +
Sbjct: 61  QTCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  LW  +  +S D+I+R+   DNFW M +TGPCGPCSEIFFDQG E  
Sbjct: 121 LWVTVHESDDEAEALW--LRHVSIDRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  + +  ++N
Sbjct: 179 SGPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y   LF  +I+  E +   +Y      ++RVI DH+R+S FL+A G+  +NEGRGYVLRR
Sbjct: 239 YSSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG++EP M  L+  +   MG  Y  L Q    ++E +  E+ RF KT+ 
Sbjct: 299 ILRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIA 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L +    +I +G VAFKLYDT G PLD+ +D+L  + L  +D   F + ++
Sbjct: 359 SGIELFNAELHNTK--DIFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQ 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQRSRA+A   G G       +  L EK+    F+GY+  +                   
Sbjct: 416 EQRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYESTKQK----------------- 458

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S ++  + +     ++  +G    V  D TPFYA++GGQ GD G         ++
Sbjct: 459 -----SRVLALLDESYHHADKLSAGVNGWVFLDTTPFYAQSGGQCGDIGEL---NGFAKV 510

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D  KK  G+ +     E+  L+    +   +D   R +++ +HSATHLLH  L  +LG 
Sbjct: 511 LDT-KKFFGLNLSQISTEK-ELKVGDEVEAVVDIS-RGEITKHHSATHLLHAVLFDVLGD 567

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+SQ GS +    LRFD +H K I++ EL  IE  VN  I + +   T +M+ ++A  SG
Sbjct: 568 HISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKSG 627

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A  G KY D VRVVS      G  S   CGG HV ++  I    I  ES + AG+RRI
Sbjct: 628 AKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRRI 682

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A ++   Q E L+ +   +K    +++  V  +     +L+      +  +  
Sbjct: 683 EAVCGNAAFNYFSEQRELLREVEHEVK--NLDILAGVARLKSNIVELKKELHDAESCIKT 740

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           +     KI  +N +S ++ E+ S ++K  +D L+ + +S   +L  + K+ K  +   V 
Sbjct: 741 D----IKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQV-KDDKVMMAAGVK 795

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   A D  +  A +LGGGGG GR   AQ+GG + +K  +A      ++ +
Sbjct: 796 ---GSDAKAGDWIKHIAPLLGGGGG-GRADFAQAGGKDISKLSEAKIEALRYITE 846


>gi|58696697|ref|ZP_00372246.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537122|gb|EAL60234.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 845

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/867 (43%), Positives = 534/867 (61%), Gaps = 54/867 (6%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GMV FKNIFTG +K   +   + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMVQFKNIFTGAQKTEMKRAVSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFKE AI+ AW+ +TKE  LD+ RL ITVY  D+EA+++W+KISG S+DKIIRITT
Sbjct: 61  SFGDYFKETAIEFAWEFITKELSLDKNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITT 120

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
           +DNFWSM  TGPCGPCSEIF+D G         + +EG+R +EIWNLVFM+F +  +   
Sbjct: 121 DDNFWSMGNTGPCGPCSEIFYDHGSP-------NLQEGDRIVEIWNLVFMEFNKDEEGNL 173

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276
             LPK  IDTGMGLER+A V+Q   +NYDIDLF  LI  S++  G      N + H++I 
Sbjct: 174 HKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCGRT---ENKIAHKIIA 230

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE---- 332
           DHLR+++FLIA+G+LP NEGR YVLRR++RRA  Y  LLGY + L+  + P L       
Sbjct: 231 DHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSA 290

Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391
            MG  YPELI+AK LIE TL+SE+E F  TL +G+ LL+   + L   + L G+ AFKLY
Sbjct: 291 YMGDIYPELIRAKSLIETTLKSEEENFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLY 350

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G PLDI  DIL  + +   D   F+ A+ EQ+ RARA   G G  + E++WF L +K
Sbjct: 351 DTYGFPLDITLDILKEKKI-NFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDK 409

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQK 510
           +G T+F+GY                      +      + + AIV  + E+++ A  G+K
Sbjct: 410 FGKTKFVGY----------------------EFNEVNDAKILAIVSSKNEVIDSAKEGEK 447

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           + ++ D+TPFY E+GGQ+GDTG  I     + I +   K   +++H  IV+ G +    +
Sbjct: 448 ITIILDKTPFYGESGGQVGDTGSLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNT 507

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +  +ID + R+ L  NHSATHLLH  L  ILG HV+Q GS + PD LRFD +H+  +T  
Sbjct: 508 VAASIDKERRQTLRRNHSATHLLHFVLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQD 567

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  +ED VN +I +NL   T+I +   AI  GA AL G KY ++VRVV +        S
Sbjct: 568 QLFLVEDMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYGNQVRVVKIG------DS 621

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHV  TGEI L  IV+ESS+  G+RRIEA+TGQ A +++   +  LK +A F+K
Sbjct: 622 RELCGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVK 681

Query: 751 VSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                ++ R+  + +E ++ +  I    K  ++ E +   +I  +NF+SH  + + +  +
Sbjct: 682 APVSEIINRLNILNQERKESEAKIKNLYKKLISAESIKSTEINGINFVSHAFTNIPANII 741

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +  +  LQ++    II      K+ K  ++I V++DL ++ +A +L  ++ +       G
Sbjct: 742 REFV--LQQQKPKTIIAFTATEKD-KTVLIIKVSKDLANKISAKELVSIAVE----KNCG 794

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G   +AQ  G + NK D AI  + S +
Sbjct: 795 GNAELAQ-TGSDSNKIDDAITAICSKI 820


>gi|301604154|ref|XP_002931707.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 968

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/972 (34%), Positives = 489/972 (50%), Gaps = 92/972 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
              S IR  F++FF++N H  + SS+ +P +DPTL+F N+GM  FK IF     P +   
Sbjct: 5   MTASEIRQKFIDFFKENAHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMA 64

Query: 60  ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTK
Sbjct: 65  KLNRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTK 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           EF +D  RLY+T +  +E        E  ++W  + GL   +I+  +  DNFW M +TGP
Sbjct: 125 EFGIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLPESRILPGSMKDNFWEMGDTGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK SIDTGM
Sbjct: 184 CGPCSEIHFDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +VLQ K +NYD DLF    +A E+ TG +               + +RV+ DH 
Sbjct: 243 GLERLVSVLQNKMSNYDTDLFVPYFEAIEKGTGARPYTGKVGAEDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  ++     L+  +   +G+A+P
Sbjct: 303 RTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFATLVDVVVQSLGNAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +   ++++ +  E+ +F KTL+RG  +LD  ++ LG+ +++ GD A+ LYDT+G P+
Sbjct: 363 ELKKDPDMVKDIINEEETQFLKTLNRGRRILDRKINSLGEHKVIPGDTAWLLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   I   RGL  +D+ SF    EE+R  A+  S G G+G  + +   +   Y   +  
Sbjct: 423 DLTSLIAEERGLT-LDLESF----EEERKAAQLKSQGKGTGDEDLLMLDI---YAIEELR 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
              L       K   K       +     + + VKAI +    VEEA +GQ+  +V D+T
Sbjct: 475 SQGLEPTDDLPKY--KYTSNADGVYEFESLIATVKAIRRDKMFVEEASTGQECGLVLDKT 532

Query: 519 PFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            FYAE GGQ  D G  +       D     + + Q +  G  +H   +  G L+    + 
Sbjct: 533 CFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVR-GGYVLHMGTL-YGHLKVGDQVC 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+
Sbjct: 591 LYVDEPKRRPIMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQEI 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY-------- 683
           +  E+  NDII +N  V     +  +A A  G  A+    Y D VRVVS+          
Sbjct: 650 RKTEEIANDIIKENKVVYALDCSLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLLAD 709

Query: 684 ---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                G + S   CGGTH+ ++G      IV+E +I  GIRRI A+TG  A+  L  QD 
Sbjct: 710 PSSPAGSITSVEFCGGTHLQNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQDA 769

Query: 741 K---LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDL 786
               L  L   +K       +V   + ++ E        +++K  L    + L+  ++DL
Sbjct: 770 LKVNLSDLEKKVKKQNSPNKDVQKEIADLSENLATASIAQWQKDVLREQLKTLKKTMDDL 829

Query: 787 SCHKIADVN-----FMSHIISE--------------VDSKELKSVMDALQKKIQSGIIML 827
                ADV          +I E                +K L   +  L+ +      M+
Sbjct: 830 DRASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPHTAAMI 889

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +  +  K + L  V +D  D+   A +  +  +  L  G GGG+   AQ+ G N    
Sbjct: 890 FSVDNDAGKITCLCQVPQDTADKGLKANEWVQQVSD-LMDGRGGGKDTSAQATGKNVGCL 948

Query: 886 DQAIAGVASFLK 897
            Q +     F K
Sbjct: 949 SQVLKLAEDFAK 960


>gi|295099596|emb|CBK88685.1| alanyl-tRNA synthetase [Eubacterium cylindroides T2-87]
          Length = 875

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/911 (35%), Positives = 491/911 (53%), Gaps = 60/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL++F+  GH + P +SL+P NDPTL++ N+G+   K  F G EKP    + 
Sbjct: 5   TGNQVRQMFLDYFKSKGHMIEPGASLVPNNDPTLLWINAGVAALKKYFDGSEKPRCNRIA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +   +
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSEEWMGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY++VY +D++A+K+W ++  +    I++    DNFW + + GP GP SEIFFD+G
Sbjct: 121 DKDKLYVSVYTDDDQAYKIWTEVCKVDPSHILKTY--DNFWEIGK-GPGGPDSEIFFDRG 177

Query: 181 ECIPGGLPGSS-----EEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
           E       G        E +RY+E+WN+VF Q++   +   ++   LP+ +IDTGMGLER
Sbjct: 178 EKYDPEGLGEKLFFEEMENDRYVEVWNVVFSQYDCDPELDRKDYKELPQKNIDTGMGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +  ++Q+   N+D DLF  +I A+E++    YEG   + +RVI DH+R+ +F ++DG   
Sbjct: 238 LVALIQDGETNFDTDLFLPIIHATEKLAKYPYEGEYKMAYRVIADHIRTLTFALSDGANF 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N GRGYVLRR++RRA+ +   LG  +  +  L+P +   M   YP L +     ++ ++
Sbjct: 298 SNSGRGYVLRRVLRRAVRFGLKLGLEDAFLYKLVPVVADTMQDFYPYLQEHVEFNQKLIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E++ F KTL  G  LLD  +S   KD  L+G+V FKLYDT+G P ++ Q+I    GL  
Sbjct: 358 VEEDTFKKTLKNGQALLDEEISKA-KDGKLSGEVVFKLYDTYGFPFELTQEIASESGLE- 415

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +    F+  + +Q+ RAR       S  T+     L      + FIGYD +         
Sbjct: 416 VSREEFDVEMNKQKERARNARNTKDSFATQNA--ELMNFTQESTFIGYDHME-------- 465

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+ + G +V+      + +V+ D T FYAE+GGQ+ D G
Sbjct: 466 ---------------CDGKIIALFKDGHMVDTLS--DEGQVILDTTCFYAESGGQVADAG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               DG+  ++TDVQK      +H   +E GIL   MSL   +D   R+  + NHS THL
Sbjct: 509 TLSADGVMCKVTDVQKARNKQHIHSVEIESGILEVGMSLHCHVDEAKRKATTANHSCTHL 568

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++G H+ Q GS +  + LRFD  H + +T+ +L  IED VN  IA   PV   
Sbjct: 569 LQSALKEVVGEHIHQAGSYVCDEYLRFDFNHFEKLTTKQLDEIEDLVNQYIAGAYPVTKE 628

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           IM+ E+A  SGA AL   KY DRVRVV++     G  S   C G HV +T +I L  I+S
Sbjct: 629 IMDIEEAKKSGATALFNEKYGDRVRVVTM-----GDVSKEFCAGCHVENTSQIGLCKIIS 683

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQ 771
           E SI +  RRI A TG +A      +   L+++A   K     N+  +V+  ++    LQ
Sbjct: 684 EESIGSDARRIVAKTGYQAYKECASEKNMLENIAISAKQKGIKNIDTKVDAAYQNMHALQ 743

Query: 772 LIHAKRKLQ--LNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q      +   ++   +  VN +   +  +D+  LK ++  L+ K  + I+ 
Sbjct: 744 KEIEQLKNQIFALKSNEWVNETVSLGSVNALIKKVEGMDAGALKDIVSNLKAKDPN-IVC 802

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             G     K   +    +D + +  +A  L + +A+ L  G GGG+P MAQ+GG + +K 
Sbjct: 803 FFGNVSNDKIVFVSGAGKDAVSKGVHAGQLVKKAAQ-LCSGNGGGKPDMAQAGGKDISKL 861

Query: 886 DQAIAGVASFL 896
           ++A   + S L
Sbjct: 862 NEAFEAIKSEL 872


>gi|317968219|ref|ZP_07969609.1| alanyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 878

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/907 (37%), Positives = 503/907 (55%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ+       T
Sbjct: 7   TGAEIRAAFLDFYEQRGHKPMASASLVP-EDPTVLLTIAGMLPFKPVFLGQQPRPSARAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F +  
Sbjct: 66  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTTVFGISP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 122 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 181

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 182 L-GDEGIDLEDDSRFIEFYNLVFMQYNRDAEGSLTPLENRNIDTGMGLERMAQILQKVPN 240

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 241 NYETDLIYPLIETAAGLAGVDYRQLDPKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF 
Sbjct: 301 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERQEVILSELKREEARFL 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ Q+I    GLA +D+  F 
Sbjct: 361 ETLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLDGFE 417

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+E QR RA+A ++ +     + I   +     AT+F GY+LL  S             
Sbjct: 418 QAMEAQRQRAKAAAVSIDLTLQDAIDQ-MAADLEATRFRGYELLDHS------------- 463

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE  E A +G  V++V D TPFY E GGQ+GD G   GDG+
Sbjct: 464 ----------SSVQALVVNGEPAERAEAGDSVQLVLDTTPFYGEGGGQVGDRGVLSGDGL 513

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +    +FVH   VERG +     +   +D   RR+   NH+ATHLL  AL  
Sbjct: 514 IVVIEAVSRNRS-VFVHSGRVERGSVSVGDVVHGQVDRACRRRAQANHTATHLLQSALKQ 572

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + IT+AEL+ IE  +N  IA+   +  + M  E A
Sbjct: 573 VVDPGIGQAGSLVDFDRLRFDFHCPRAITAAELEQIETLINGWIAEAHSLEVQEMTIEKA 632

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY+D V        D    S  LCGGTHVS+T EI L  IVSES + AG
Sbjct: 633 KAAGAVAMFGEKYSDVV-----RVVDVPGVSMELCGGTHVSNTAEIGLFKIVSESGVAAG 687

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEA+ G    ++L  +D  +K L    K     +V RV  +  E +  Q      + 
Sbjct: 688 IRRIEAVAGAAVLAYLNERDAVVKQLGERFKAQPAEIVERVLTLQSELKASQKALTSARE 747

Query: 780 Q-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           +               I D   +   +  V+   L+S    L  ++  G  +++G   + 
Sbjct: 748 ELALAKSAALASQAEAIGDFQVLISRLDGVEGGGLQSAAQGLVDQLGEGAAVVLGGLPDP 807

Query: 834 ---KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    + ++ +   A       AK  GGGGG GRP++AQ+GG +G   D A+
Sbjct: 808 SDLGKVILVAAFGKGVIAKGQQAGKFIGAVAKACGGGGG-GRPNLAQAGGRDGAALDAAL 866

Query: 890 AGVASFL 896
                 L
Sbjct: 867 EQAKGEL 873


>gi|241896592|ref|ZP_04783888.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
 gi|241870184|gb|EER73935.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313]
          Length = 888

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/918 (35%), Positives = 489/918 (53%), Gaps = 63/918 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R+ FL FF+  GH++ PS SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 11  SSAEVRSLFLRFFESKGHKIEPSQSLIPQNDPTLLWINSGVATLKKYFDGSVVPENHRIT 70

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEM+GNFS G YFKE AI  AW+LLT  + F +
Sbjct: 71  NAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEAIPWAWELLTSPEWFGM 126

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY  D++A  +W    GL  D +      DNFW + E GP GP SEIF+D+G
Sbjct: 127 DPDKLYVTVYPNDDQAKDIWLHKVGLPKDHLYEEP--DNFWDIGE-GPSGPDSEIFYDRG 183

Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNK----QERFILPKMSIDTGMGLERM 233
           E         +    E ERY+EIWNLVF QF         ++   LP  +IDTGMGLER+
Sbjct: 184 EEFNDPDEAENYPGGENERYLEIWNLVFSQFNHLPGLTDNKDYPELPTKNIDTGMGLERV 243

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290
            +V Q    N++ DLF  LI  +E ++G  KY  ++   ++ +VI DH+R+ +F I DG 
Sbjct: 244 VSVFQHAKTNFETDLFLPLIHKTEDISGQFKYGEDDTKDISFKVIADHIRAVTFAIGDGA 303

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGY++RR++RRA+ + R LG ++  +  L+P +   M S YPE+ +    I   
Sbjct: 304 LPSNEGRGYIIRRLLRRAVLHGRKLGISQVFLKDLVPVVGEIMISYYPEIAKNADYIASI 363

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + +E+ RF KTL  GL LLD V+     K  I++G +AFKLYDT+G P ++ ++     G
Sbjct: 364 VEAEEIRFNKTLTDGLSLLDDVIEQAKSKKGIIDGAIAFKLYDTYGFPYELTEEYATDEG 423

Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           L  +D   F++ ++ Q+ RAR A S     G   ++   LK     +Q++G+  L     
Sbjct: 424 LK-VDRDGFDEQMKAQQERARSARSNKASMGVQNELLTGLK---TPSQYVGWSEL----- 474

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  ++   ++VEEA +GQ V+ +F +TPFYAE GGQ+
Sbjct: 475 -----------------TVEQTELVNLIVDNKLVEEANAGQ-VQAIFAKTPFYAEMGGQV 516

Query: 529 GDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G    +      ++TDVQ    G  +H   +    L       L +D      +S N
Sbjct: 517 ADLGMIYDESGQAVAKVTDVQNAPNGQHLHTLSII-APLFVGKQYKLDVDRPYHVAVSKN 575

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLL   L  +LG H +Q GS +T +GLR+D T++  + S +L+ +ED +N  I  N
Sbjct: 576 HTATHLLDQTLRNVLGEHTTQAGSLVTAEGLRYDFTYNGAVPSEKLQEVEDIINQKIIDN 635

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LP+     + E A   GA A+   KY ++VRVVS+     G +++   GGTH +ST E+ 
Sbjct: 636 LPISWIETDIESAKKLGAVAVFTEKYGEKVRVVSI-----GDYNAEFDGGTHANSTAELG 690

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765
           +  IV E    AG+RRIEA+TG  A +     D  L   A  +K  Q   +  ++  +  
Sbjct: 691 MFKIVGEQGTGAGVRRIEAVTGSGAMALFKLHDSWLAKAAEQVKAPQLSEINDKISGLQT 750

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             ++ +   A  + +L  ++         KI +   ++  ++      L+S  D  ++  
Sbjct: 751 ALKEAERQAASLEQKLANQEADAAFANPQKINNYTLIATEMAVESMDVLRSTADTWKQST 810

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L     +K   ++ V  E +     A DL +  A  +GGGGG GRP MAQ+GG 
Sbjct: 811 PSDVLVLAANLGDKVNLLVAVAPEAVKKGIKAGDLVKSIAPAIGGGGG-GRPDMAQAGGK 869

Query: 881 NGNKADQAIAGVASFLKK 898
           N      A    A +L++
Sbjct: 870 NPAGIADAFKQAADWLQE 887


>gi|329919606|ref|ZP_08276595.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G]
 gi|328937411|gb|EGG33833.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G]
          Length = 877

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/916 (36%), Positives = 506/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 416 GL-VVDKEEFDAEMKAQKERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 471 ---------------------ARLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 509 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 568 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 628 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 683 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 743 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 803 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N     +A+  V + L
Sbjct: 862 NPAGLAKALETVLNEL 877


>gi|307298258|ref|ZP_07578062.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916344|gb|EFN46727.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 869

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/905 (37%), Positives = 513/905 (56%), Gaps = 49/905 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+   H+ L S+SLIP NDP LMFT +GMVPFK IF G+ +P Y+ V
Sbjct: 4   MTGAEIRESYLKFFESKDHKRLQSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYRRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR     ND++NVGRT RH TFFEMLGNFSFG YFK   I+ AW+ +T+  +L 
Sbjct: 63  TTCQKCVRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKRETIKWAWEFVTEYLNLP 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + RL+++VY +D+EAF +W+   G+   KIIR+   DN+W     +GPCGP SEIF D+G
Sbjct: 119 ENRLWVSVYLDDDEAFSIWRDEVGIPEKKIIRLGKKDNWWGPAGPSGPCGPDSEIFIDRG 178

Query: 181 ECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                  P     + +  R++E WNLVF +F Q  +     L + +IDTG GLER A++L
Sbjct: 179 HGDNCPDPENCSPACDCGRFLEFWNLVFTEFNQDEEGNLTYLERKNIDTGFGLERAASIL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295
           Q+  +N+D DLF  +I+  E++ G+KY+    + ++ +VI DH RS +F+++DGILP+NE
Sbjct: 239 QDVDSNFDTDLFIPIIKKIEEILGIKYKEKPGSDISIKVIADHARSVAFMVSDGILPSNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA+ ++ LLGY+ P +  ++  +   MG+ YPEL Q     +E    E+
Sbjct: 299 GRGYVLRRILRRAVRHSSLLGYSSPFLYRIVETVADHMGNVYPELRQRLSFTQEITLKEE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL  G   L  VL    +   L+G   F L+DT+G PL+++++I+   G+  +D 
Sbjct: 359 ERFLSTLVNGEKRLKSVLVDKKE---LSGPELFMLHDTYGFPLELVEEIVAGTGVT-LDK 414

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             + + +  QR RAR         +  + + ++    G ++F GY               
Sbjct: 415 EGYEREMALQRERAREAMGDREYLSNVEAYSTIFPVTGNSKFTGYSRFED---------- 464

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S + AI+++G+ VE    G+  +++F++TPFY E GGQ+ DTG   
Sbjct: 465 -------------KSKIVAILKEGDAVETLSKGETGDLIFEKTPFYPERGGQVTDTGLIR 511

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    ++  V    + + VH A VE G L       L++D   R+ ++ NH+ATHLLH 
Sbjct: 512 TDNASAKVERVFIPYQEMIVHRAFVEEGALHVGDKAWLSVDEDRRKAITRNHTATHLLHA 571

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q+GS + PD LRFD +H +P+++ EL  +E+ VN+ I +   V     +
Sbjct: 572 ALRKVLGEHVHQSGSLVQPDRLRFDFSHFQPLSTDELNEVEEIVNEEILKAKVVDKAEKS 631

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++       AL   KY D+VRV+SVE       S  LCGGTHV +TGEI L  I+S++S
Sbjct: 632 FDEIKGQDVMALFEEKYGDKVRVISVEG-----FSRELCGGTHVDNTGEIGLFKILSDTS 686

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AG RRIEAITG+ + ++      + K++   L+V +  ++ R++ +  E +       
Sbjct: 687 VAAGTRRIEAITGKTSLNYFRNLFNRQKTIREVLEVPEDLIIQRLQGVLNELKSGGQEIK 746

Query: 776 KRKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + K +L   D         +     +   +    S  L++  D L  K   GI+++    
Sbjct: 747 RLKEKLLSGDSLMKDKKMIVNGTKLLIRRVENAPSSALRNGADVLLSKEGGGIVIIF-NE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            E   S ++ V + L D+FNA ++AR  A+ LGGGGG GRP  AQ+GG + +K    I  
Sbjct: 806 LEDSVSFVVKVEKKLTDKFNAGEIARKIARDLGGGGG-GRPDFAQAGGKDLSKLQTLIER 864

Query: 892 VASFL 896
           +  +L
Sbjct: 865 IDEYL 869


>gi|295396919|ref|ZP_06807043.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974853|gb|EFG50556.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 880

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/917 (36%), Positives = 508/917 (55%), Gaps = 62/917 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+F+Q  GH + PS+SL+P  DP+L++ NSG+   K  F G   P    +T
Sbjct: 5   TSAEIRQKWLDFWQSKGHSVEPSASLVPVQDPSLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK   I  AW+ LT  K   L
Sbjct: 65  NSQKSIRT----NDIENVGVTARHHTLFEMLGNFSIGDYFKAEVIPWAWEFLTDEKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+T Y ED E  +LW+K +GLS +  + +   DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYMTYYPEDTETVELWRKATGLSDNHYVPV--EDNFWDLGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                      E     E ERY+EIWN+VF QF      E   L   +IDTGMGLERM +
Sbjct: 178 VKYQDLEDSDPEMYPGGENERYLEIWNIVFSQFNHMPNGEYVPLKHKNIDTGMGLERMTS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILP 292
           V+Q+   N++ DLF  +I+  E + T +KY       V+++VI DH+R+ +F I+D  LP
Sbjct: 238 VIQDAPTNFETDLFLPIIKEIETLGTAVKYGDKPETDVSYKVIADHVRAVTFAISDRALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGY+LRR++RRA+ +AR LG  +  +  L+P +   M   YPE+   +  I++ ++
Sbjct: 298 SNEGRGYILRRLIRRAIMHARRLGIKDNFLTKLVPVVADIMADFYPEVKADQNFIQDVIK 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E++RF +T++ G  ++  V+S L    +++++G  AFKLYDT+G PL++ Q+ L   G+
Sbjct: 358 TEEDRFNETINEGEAIIQEVISTLEAEHNKVMSGAQAFKLYDTYGFPLELTQEYLEEVGI 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F +A++ QR RARA          +     L E    + ++GYD L       
Sbjct: 418 -DVDLSGFEEAMKAQRERARAARKDSTGMAVQSEV--LSEIDVTSSYVGYDQL------- 467

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            V + +  IV    +V  A +G +V +V +QTPFYAE GGQ+ D
Sbjct: 468 ----------------VVETRINTIVLGDALVSAAEAGDEVYLVAEQTPFYAEMGGQIAD 511

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG  + +  +L   + +V +   G  +H   +   I+  + ++ L +D +    +  NH+
Sbjct: 512 TGDVLDEDGQLIGHVVNVVRAPNGQHLHEVKLAAAIV-LDQTVQLVVDRRRHHSIEKNHT 570

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS +T D LRFD +H   +T  EL  +E  VN+ IA+  P
Sbjct: 571 ATHLLHQALKDVLGDHANQAGSLVTADHLRFDFSHFGQVTDEELAEMEAKVNEAIAEAFP 630

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VVT + + ++A A+GA AL G KY   VR+V + +      S  LCGGTHV +T EI L 
Sbjct: 631 VVTTVTSIDEARAAGAQALFGEKYGSEVRMVDINH-----WSIELCGGTHVGNTAEIGLF 685

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            I SES I AG+RRIEA+T   A      Q+  LK +A+ LK  +  N+V R+++  EE+
Sbjct: 686 KITSESGIGAGVRRIEAVTSLAAIQEYKIQENILKQIAANLKAGKFLNIVSRLQQFREEH 745

Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           ++        + ++N +           +     ++  +      +L+ + D  ++K  S
Sbjct: 746 KETLQQLNALRDKMNAQAAGQIFDHVETVGAYTVIAEHVPNRSMDDLRKIADEWKQKGSS 805

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            I++L   S + KA++LI V +D +     A DL +  A  +GGGGG GRP MAQ+GG  
Sbjct: 806 DILVLA-TSVDDKANLLIAVGQDAVKAGVKAGDLIKQVAPKIGGGGG-GRPDMAQAGGKK 863

Query: 882 GNKADQAIAGVASFLKK 898
               ++A+A     + K
Sbjct: 864 PAGIEEALAFAKEIIGK 880


>gi|111224623|ref|YP_715417.1| alanyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111152155|emb|CAJ63885.1| alanyl-tRNA synthetase [Frankia alni ACN14a]
          Length = 884

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/914 (35%), Positives = 487/914 (53%), Gaps = 54/914 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 4   MDTAEIRSRFLNHFARRGHTIVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLATPWPRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQK VR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++LL   F   
Sbjct: 63  TSVQKVVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFK 118

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+++  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 119 PDDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGA 176

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+
Sbjct: 177 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++  + Q+TG +Y  +  + V  RV+ DH R+++ LIADG++P+N
Sbjct: 236 LQGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSN 295

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L  A+ T MG  YPEL+     I     +E
Sbjct: 296 EGRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  + D  +  +       L GD AFKL+DT+G P+D+  ++    GL+ 
Sbjct: 356 EASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +  + GAT F GY+ L        
Sbjct: 415 VDEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL-------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAI-VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         +  S +V  + +  G  +     G +V VV D TPFYAE+GGQ  D
Sbjct: 467 --------------SRESGVVGLVGIADGAGLTVVGEGDEVGVVLDATPFYAESGGQEPD 512

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    DG  +++ DVQ+    + +H   V  G LR    +   +D   RR +S +H+AT
Sbjct: 513 FGLLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTAT 572

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV 
Sbjct: 573 HLVHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPVR 632

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +  +E+A   GA AL G KY D VRVV     D G ++  LCGGTHV+S+ ++  + +
Sbjct: 633 AFVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVKL 687

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SESSI AG RR+E + G  A  +L  +   +  L++ LK     +  RV +I    R  
Sbjct: 688 LSESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRDA 747

Query: 771 QLIHAKRK--LQLNVEDLSCHKIADVNFMSHIISEVDS----KELKSVMDALQKKIQSGI 824
           +    + +    L           DV  ++ + +EV +     +++ +   ++ ++    
Sbjct: 748 ERELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGRP 807

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++  +  +  + V++  +        A +L R S   L GG GGG+P +AQ GG N   
Sbjct: 808 AVVAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGNSEM 866

Query: 885 ADQAIAGVASFLKK 898
                A +   + +
Sbjct: 867 IPAVFAKLRGLVAE 880


>gi|15609692|ref|NP_217071.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842093|ref|NP_337130.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|148662394|ref|YP_001283917.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823751|ref|YP_001288505.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968834|ref|ZP_02551111.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404504|ref|ZP_03416685.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215427951|ref|ZP_03425870.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431513|ref|ZP_03429432.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|253798364|ref|YP_003031365.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435]
 gi|289553655|ref|ZP_06442865.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605]
 gi|289746347|ref|ZP_06505725.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289751174|ref|ZP_06510552.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92]
 gi|289754673|ref|ZP_06514051.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054]
 gi|294994334|ref|ZP_06800025.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635166|ref|ZP_06952946.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732158|ref|ZP_06961276.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|306776829|ref|ZP_07415166.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001]
 gi|306780594|ref|ZP_07418931.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002]
 gi|306785357|ref|ZP_07423679.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003]
 gi|306789957|ref|ZP_07428279.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004]
 gi|306794037|ref|ZP_07432339.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005]
 gi|306798436|ref|ZP_07436738.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006]
 gi|306804315|ref|ZP_07440983.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008]
 gi|306807646|ref|ZP_07444314.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007]
 gi|306969847|ref|ZP_07482508.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009]
 gi|306972944|ref|ZP_07485605.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010]
 gi|307080655|ref|ZP_07489825.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011]
 gi|307085242|ref|ZP_07494355.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012]
 gi|313659492|ref|ZP_07816372.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|3122879|sp|O07438|SYA_MYCTU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830157|sp|A5U5Q5|SYA_MYCTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3261815|emb|CAB09762.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE)
           (ALANINE TRANSLASE) (ALARS) [Mycobacterium tuberculosis
           H37Rv]
 gi|13882374|gb|AAK46944.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|148506546|gb|ABQ74355.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722278|gb|ABR06903.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis F11]
 gi|253319867|gb|ACT24470.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435]
 gi|289438287|gb|EFD20780.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605]
 gi|289686875|gb|EFD54363.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289691761|gb|EFD59190.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92]
 gi|289695260|gb|EFD62689.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054]
 gi|308214756|gb|EFO74155.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001]
 gi|308326528|gb|EFP15379.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002]
 gi|308329949|gb|EFP18800.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003]
 gi|308333566|gb|EFP22417.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004]
 gi|308337594|gb|EFP26445.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005]
 gi|308341259|gb|EFP30110.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006]
 gi|308345967|gb|EFP34818.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007]
 gi|308349066|gb|EFP37917.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008]
 gi|308352656|gb|EFP41507.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009]
 gi|308357634|gb|EFP46485.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010]
 gi|308361576|gb|EFP50427.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011]
 gi|308365196|gb|EFP54047.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012]
 gi|323718828|gb|EGB27984.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CDC1551A]
 gi|328458134|gb|AEB03557.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 4207]
          Length = 904

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/933 (35%), Positives = 491/933 (52%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  SE+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ+  N Y+ DL + +I    +V    Y+     + V +R+I DH R+++ LI
Sbjct: 234 VERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFER 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++
Sbjct: 354 ISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR
Sbjct: 414 AAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFD 516
                                    + +  I   G+ V          A  GQ+VE+V D
Sbjct: 473 S-----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++
Sbjct: 510 RTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  + 
Sbjct: 570 AAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  
Sbjct: 630 TQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + E  R  +    + ++               +I +V  ++  +S  + +
Sbjct: 746 SEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTA 805

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVL 863
            +L+S++  ++ K+ S   ++  I++ +  +V   V  +         A DL +  A  +
Sbjct: 806 ADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+  +AQ  G N    D A+  V S +
Sbjct: 866 E-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897


>gi|149640708|ref|XP_001506178.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 1
           [Ornithorhynchus anatinus]
          Length = 968

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/971 (33%), Positives = 484/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
           + S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  ++     L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            DL       K + +               + VKA+ ++   V+E  +GQ+  VV D+T 
Sbjct: 476 RDLEVTDDSPKYNYRA--NASGSYEFESPVATVKALRREKTFVDEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  + D           + +VQ +  G  +H   V  G L+    + L
Sbjct: 534 FYAEQGGQIFDEGYLVKDDDGSEDKTEFTVKNVQVR-GGYVLHIGTV-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQEIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N +I    PV  +      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KTEEIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELLEDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SSPAGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKALRKAESL 770

Query: 742 ---LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
              L  L + +K       +V   + ++ E        ++ K +L  A + L+  ++DL 
Sbjct: 771 KTALSVLEAKVKAQTAPNKDVQKEIADLGETLATAVVPQWHKDELREALKALKKIMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIESQPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  ++   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLP 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EAVQLATSFAQ 960


>gi|290953862|ref|ZP_06558483.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312765|ref|ZP_06803502.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 804

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/838 (42%), Positives = 497/838 (59%), Gaps = 45/838 (5%)

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LTKE  L  
Sbjct: 2   TVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKLPV 61

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +L++T+Y  D+EAF +W K  GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D GE 
Sbjct: 62  EKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHGED 121

Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GGLPG+ E +G+RYIEIWN+VFMQ+ +        LPK S+DTGMGLER++ VLQ   
Sbjct: 122 VAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQNVH 181

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NY+IDLF+ LI+ ++QVT  K    N  + +VI DH+R+ +FLIADG+LPANEGRGYVL
Sbjct: 182 SNYEIDLFQALIKKAQQVTHAKDI--NSPSLKVIADHIRACAFLIADGVLPANEGRGYVL 239

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RRI+RRA+ +   +G  E     L+  L ++MG AY +LI  + LIE+TL  E+E F KT
Sbjct: 240 RRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFLKT 299

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           ++ G+ + D  + +L KD  ++G+VAFKLYDT+G P D+  D+   +GL  +D  +F   
Sbjct: 300 IENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFLAQ 357

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           ++ Q+ R++        G     + SL      ++F GY  L                  
Sbjct: 358 MQIQKQRSKEA------GKFNVDYNSLINSQVKSEFRGYSTL------------------ 393

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   + V  I Q G++V          VV D+TPFYAE+GGQ+GD G   G G   
Sbjct: 394 -----IEDAKVLEIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGFEF 448

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + DVQK  E I +H   + +G L     L   +  + R   + NHSATHLL+ AL  +L
Sbjct: 449 VVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKLVL 507

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G H  Q GS +  + LRFD TH K I+ +E++ IE  VN  I  N PV T   +++ A +
Sbjct: 508 GGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKAKS 567

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY D VRV+S+     G  S  LCGGTHV+ TG+I L  + SE SI +G+R
Sbjct: 568 LGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASGVR 622

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+T  +A  H    + K+ ++   LK +  N++ +++ + E+ +  +   AK K +L
Sbjct: 623 RIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKKEL 682

Query: 782 ---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              +  D+    I D+  +   +  VD K L++ +D  + K    +I ++  +   K   
Sbjct: 683 LSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSKNTK-VIAVLTTTNADKVQF 741

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +I V+  L     A D+A+  +  +  G GGGR  MAQ GG N    DQA++ V  F+
Sbjct: 742 VIGVSNALTTLIKAGDIAKELSSHI-DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 798


>gi|309803595|ref|ZP_07697687.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|309809661|ref|ZP_07703517.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|312875207|ref|ZP_07735220.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
 gi|308164343|gb|EFO66598.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d]
 gi|308170021|gb|EFO72058.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D]
 gi|311089314|gb|EFQ47745.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b]
          Length = 877

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/916 (36%), Positives = 507/916 (55%), Gaps = 65/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF+++GH +L S+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D +A++LW ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 178 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            +V+Q+   N++ DLF  +I+ +E+++ G +Y     + V  ++I DH+R+ SF IADG 
Sbjct: 236 VSVIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+  +   M S YPE++  +  +E+ 
Sbjct: 296 LPSNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF +TL  GL LLD ++S     K   L+G  AFKL+DT+G P ++  +     
Sbjct: 356 IKNEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDA 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA +D   F+  ++ Q+ RAR     L S  ++ I  +L      + F  + L      
Sbjct: 416 GLA-VDKEEFDAEMKAQKDRARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-- 470

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+
Sbjct: 471 ---------------------AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQV 508

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L   + DVQ       +H   +    ++     VL +D Q RR L  N
Sbjct: 509 ADHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHN 567

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+H  Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   
Sbjct: 568 HTATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAE 627

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +PV T I ++E  +  GA AL G KY+++VRVV +        S   CGGTH  +T +I 
Sbjct: 628 IPVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIG 682

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +L IVSES+I AG+RRI A+TGQ+A  + +  DE LK +   +K     ++  +V  + +
Sbjct: 683 MLKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALED 742

Query: 766 EYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             R+ Q    + K Q+N    S     I D+N +  I   VD     +L+ + D  + + 
Sbjct: 743 ALREEQKTVEQLKSQINQAKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQN 802

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            S +++L      K   ++ +  + +     A DL +++A + GGGGG GRP+MAQ+GG 
Sbjct: 803 LSDVLILGTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGK 861

Query: 881 NGNKADQAIAGVASFL 896
           N     +A+  V + L
Sbjct: 862 NPAGLAKALETVLNEL 877


>gi|326927213|ref|XP_003209787.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Meleagris
           gallopavo]
          Length = 968

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/971 (33%), Positives = 483/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFKENRHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W  + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLDEGRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGD-RDASHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+PE
Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+++F KTL RG  +LD  +  +G  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + +   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMEGF----EEERKNAQLKSQGKGAGGEDLLMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K                 + + VKAI ++ + VEE  +GQ+  +V D+T 
Sbjct: 476 RGLEVTDDSPKYG--YTSDPSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  + D           + +VQ +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVR-GGYVLHIGTL-YGSLKVGDQVHL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K
Sbjct: 592 SIDETRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGALSTQEIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
            +E   N +I +   V  R      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KVEGIANQMIEEAKTVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVDELLADP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD-- 739
               G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  AR  L   +  
Sbjct: 711 SGPAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALRKVESL 770

Query: 740 -EKLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            + L +L + +KV      +V   + ++ E        +++K +L  A + L+  ++DL 
Sbjct: 771 KKLLSALDAKVKVQTAPNKDVQKEITDLSEMLATAVIPQWQKDELREAVKALKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               AD+                     +  + +   +K L   +   +        ML 
Sbjct: 831 RASKADIQKRVLEKTKQVIESHPNQPLVIMEMENGASAKALNESLKLFKTHSPQTATMLF 890

Query: 829 GISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  + + L  V ++       A    +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 AVDNEAGRITCLCQVPQETAQKGLKANQWVQEVSA-LMDGKGGGKDISAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+     F +
Sbjct: 950 EALRLATDFAR 960


>gi|257126597|ref|YP_003164711.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257050536|gb|ACV39720.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 871

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/913 (36%), Positives = 519/913 (56%), Gaps = 60/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +
Sbjct: 1   MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   L+
Sbjct: 60  TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLE 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
           + RL+++VY  D+EA+++W K  G+ A++I+R+   DN+W+    G CGPCSEI++D   
Sbjct: 116 EDRLWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          ++G+R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q
Sbjct: 176 MGKNNEEADRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K NN+D DLF ++ +  + V  ++    N    ++I DH+R+S FLI DG+LP+NEGRG
Sbjct: 236 NKDNNFDTDLFTNITKGIKSVLEIQ-GNENEEAIKIIADHVRASVFLIGDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+LR+I+RRA         ++    +  +  L+P +   M  AYPEL + +  IE+ +R 
Sbjct: 295 YILRKIIRRAFGAGSAAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRL 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  TL  G  +L+  +  L  +  + L  ++ FKLYDT G P ++ + IL  +G  
Sbjct: 355 EEERFATTLKNGTEMLEEEIQKLKGENQKELPAELTFKLYDTFGFPFELTKLILENQGFE 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
                 F + L EQ  R++     +     ++      EK+G T+F GY           
Sbjct: 415 A-SEEEFEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGY----------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
             +   +K  +        I                    E++FD+TPFYAE+GGQ+ DT
Sbjct: 463 -LQNYEEKSKLLHIAKSEGI-----------------SGYEMIFDKTPFYAESGGQVADT 504

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSAT 590
           G         ++ +V KK + +F+H   + RGI     + + + ID   R+ +  NH+AT
Sbjct: 505 GIITSGEFEGKVVNVVKKHD-VFIHQVEIIRGIAPAVGVEVKMQIDVNRRKDIQRNHTAT 563

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH  L   LG+HV Q+GS +  + LRFD +H + I+   ++ IE  VNDII  NL V 
Sbjct: 564 HILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAISPEMIEKIEKGVNDIILSNLQVK 623

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               N EDA A GA AL   KY D VRVV ++      +S  LCGGTHV STGEI L  I
Sbjct: 624 INYENIEDAKARGAMALFSDKYGDIVRVVEIDG-----YSIELCGGTHVKSTGEIGLFNI 678

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE+ I +G RRI A TG ++ +++   +EK+K ++   +  + NVV  +E+   + R  
Sbjct: 679 ESENGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAA 738

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +H + + +L   ++     +   +  V  +     + +  ELK ++D  ++K+QSGI+
Sbjct: 739 VKVHEEMQTKLVKYEINEMLENVETVNGVKVLKRSFVDKNVDELKEIVDRGKEKMQSGIV 798

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G +   KA  ++ VT+DL+ +  A ++ +++A+ + GG GGGRP  AQ+GG NG+  
Sbjct: 799 IL-GTNNNGKAVFVVGVTKDLISKVKAGEIVKVAAQ-VAGGNGGGRPDFAQAGGKNGSAV 856

Query: 886 DQAIAGVASFLKK 898
            +A+     F+ +
Sbjct: 857 KEAVEKAFEFVTE 869


>gi|148679537|gb|EDL11484.1| alanyl-tRNA synthetase, isoform CRA_a [Mus musculus]
          Length = 1055

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/971 (32%), Positives = 482/971 (49%), Gaps = 92/971 (9%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
                IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 93   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 152

Query: 60   --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 153  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 212

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 213  FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 271

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 272  GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 330

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 331  LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 390

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
            + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 391  TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 450

Query: 340  LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
            L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 451  LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 510

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 511  LTGLIAEEKGL-VVDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---YAIEELRA 562

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
              L       K + +         +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 563  KGLEATDDSPKYNYQ--SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 620

Query: 520  FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 621  FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 678

Query: 574  TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 679  FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 737

Query: 634  SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
              E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 738  KAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 797

Query: 683  -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 798  CGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL 857

Query: 742  LKSLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
             KSL++    +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 858  KKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLD 917

Query: 788  CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                ADV                     +  + S   +K L   +   +        ML 
Sbjct: 918  RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 977

Query: 829  GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 978  TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQ 1036

Query: 887  QAIAGVASFLK 897
            +A+    SF +
Sbjct: 1037 EALQLATSFAQ 1047


>gi|227894659|ref|ZP_04012464.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
 gi|227863554|gb|EEJ70975.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047]
          Length = 879

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 502/919 (54%), Gaps = 68/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF+++AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDQAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +D  + K+W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKDKLYCTVYPKDVASQKVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY     +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTPGKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LL  ++    K  D+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLSLLADLIDKAKKSPDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  ++ Q+ RAR     L S   + +  +L      ++F           
Sbjct: 415 GLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSEF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                          +     + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------EYGVYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL ID + R  L  +
Sbjct: 508 ADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDLI-LPVEKGQEYVLKIDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E  VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEQLVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K     N++ +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEDVKATKPDNIIDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +  + Q        ++N            +  D+  ++ I       +L+ + D  +   
Sbjct: 742 DLHESQKQVEALNKKINQAKAGQIFDDVKQAGDLTVIATIADVNSMNDLRELADNWKSSN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +S +++L   + + KA+++I + +  LDR   A DL + +A + GGGGG GRP+MAQ+GG
Sbjct: 802 KSDVLVLAA-NNDGKANMIISLDKKALDRGLKAGDLIKKAAPIFGGGGG-GRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
                 + AI  V   + K
Sbjct: 860 KKPEGLNDAIKAVIDEISK 878


>gi|330998231|ref|ZP_08322057.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329568923|gb|EGG50721.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 871

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/918 (35%), Positives = 484/918 (52%), Gaps = 74/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G      +  
Sbjct: 1   MTANEIRDSFVKFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNRPATSKRC 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVDVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY TV++         D EA   W+K   L AD II    +DNFW M  TGPCGPCS
Sbjct: 121 KSNLYATVFEGSPEEGLERDNEAASYWEKF--LPADHIINGNKHDNFWEMGATGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D + E     +PG    +++    IEIWNLVFMQ+ ++  Q    LP   IDTGMG
Sbjct: 179 EIHIDLRPEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADQSLEPLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287
            ER+  V+Q K +NYD D+F+ +I+    ++  +Y  +    V  RV+ DHLR+ +F IA
Sbjct: 239 FERLCAVMQGKRSNYDTDVFQPIIRVIGDLSDCRYGEDPKKDVAMRVVADHLRTIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N   GYV+RRI+RRA+ YA   LG  E  M  LLP L  EMG +YPEL   K+L
Sbjct: 299 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLPVLVQEMGKSYPELEAQKVL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I + ++ E++ F +TL+ G+ LLD V++        +++G  AF L+DT+G PLD+ + I
Sbjct: 359 ISKVMKEEEDSFLRTLETGIRLLDRVMAETRASGKTVIDGVEAFTLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G+  +D  +F+  +++Q+ RAR       +      W  ++E  G T+F G+D   
Sbjct: 419 CRENGMT-VDEETFHAEMQKQKERARNA-----AAVETGDWVVVRE--GETEFKGWDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                ++V D TPFYAE 
Sbjct: 471 HECHILRYRKVTQKKQTF----------------------------YQIVLDYTPFYAEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G    +   ++I D  K+   + VH A  +      E   +  +D   R    
Sbjct: 503 GGQVGDRGVLCSEHETIEIVDT-KRENNLPVHIA--KTLPEHPEADFMACVDTDLRAASE 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ THLL  AL T+LG HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I 
Sbjct: 560 ANHTCTHLLDQALRTVLGEHVEQKGSLVTPEYLRFDFSHFQKVTDEQLREVERIVNAKIR 619

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++LP+     M  E A   GA AL G KY DRVRVV          S   CGG H  STG
Sbjct: 620 EDLPLQDHRDMPIEKAKELGAIALFGEKYGDRVRVVQFG------DSVEFCGGCHAKSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I ++ I+SESS+ AGIRRIEAITG++  + L    +    L +    +  +V   + + 
Sbjct: 674 RIGMVKILSESSVAAGIRRIEAITGEKVENMLYTLQDLTNELRTLFNNAP-DVKAAILKS 732

Query: 764 WEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQKK 819
            EE    K Q+  + ++     +     + A VN ++    I  + +  +K +   L+  
Sbjct: 733 IEENAILKKQIEESMKEKAAQAKARIVSQAAIVNGVTLYRSILPMPADLVKDMAFQLRNG 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +  +++ +G   E K  +    +++++     N   + R +AK++ GG GGG+PH A +
Sbjct: 793 AEDALVI-IGSLHEGKPMLTAAASDNMVKAHGMNVGKIVREAAKLIQGG-GGGQPHFATA 850

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+      
Sbjct: 851 GGKNADGLSAAVDKFVEL 868


>gi|313207039|ref|YP_004046216.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
 gi|312446355|gb|ADQ82710.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868]
          Length = 867

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 508/918 (55%), Gaps = 75/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQQIRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKKEAIVFAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D+EA+  WK    ++ D+I+     DNFW M E+GPCGPCS
Sbjct: 121 KENLYVTIFEGDATENLERDQEAYNCWKSY--IAEDRILNGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +++  + +E+WNLVFM+F ++       LP   +DTGMG
Sbjct: 179 EIHIDLRSEEEKSKVSGKDLVNQDHPQVVEVWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFL 285
            ER+   LQ KT+NYD D+F  LI   EQ++  KYEG       +  RV+VDH+R+ SF 
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIAKVEQLSQKKYEGLLDNEKDIAIRVVVDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y+ R L   E  +  L+  L  +MG+ +PE+ + +
Sbjct: 299 IADGQLPSNTGAGYVIRRILRRAISYSYRFLDMKEVFLYELVAVLKNQMGAFFPEIEKQE 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++ E+  F KT++ GLV L+ ++       ++ L G   F+LYDT+G P D+ +
Sbjct: 359 KLVTEVIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSR 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +GL  +D   F++ +E+Q+ R++  S        +K++  +  K     F+GYD 
Sbjct: 419 IIAEEKGLT-VDEKGFDEEMEKQKQRSKKSSA-------QKVYDWVTLKDETESFVGYDQ 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L    F+   RK+                            E   G   +VVF+QTPFYA
Sbjct: 471 LEHKVFITRYRKL----------------------------ENKDGVFYQVVFNQTPFYA 502

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G    +  + ++ D +K+     ++ ++++      E      +D + RR 
Sbjct: 503 EGGGQVGDKGYIESEEGQFEVLDTKKENN---LNISLIKDLPQAPEKEFTAVVDSRLRRN 559

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHSATHLLH AL  +LG+HV Q GS +  D LRFD +H   ++  E+  +E+ VN  
Sbjct: 560 TQANHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAK 619

Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+ +     +  ++A+  GA AL G KY D VR++          S  LCGGTH  S
Sbjct: 620 IKENISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHAKS 673

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI L  IVSESS  AGIRRIEAI+ ++A ++    +E++  L+  LK    +V   VE
Sbjct: 674 TSEIGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVE 731

Query: 762 EIWEEYRKL--QLIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817
           ++ EE +KL  +L   K++L  N      ++    +   +   ++ +D+  +K ++  L+
Sbjct: 732 KLLEENQKLKSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K++ + +I+++  + + K  + + V++DL D +NA  + +  AK + GGGG G P  A +
Sbjct: 792 KEVPTSVIVILSDAND-KPMISVGVSDDLGDSYNAGVIVKELAKEIQGGGG-GNPGFATA 849

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N     +A     S 
Sbjct: 850 GGKNLEGLPKAYEKAQSL 867


>gi|205830259|sp|A2CDK7|SYA_PROM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/913 (36%), Positives = 506/913 (55%), Gaps = 56/913 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FL FF +  H+++PS+SL+P  DPT++ T +GM+PFK +F GQ +      T
Sbjct: 16  TGSEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPD 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R++E +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 191 L-GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ D+   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           ++RR++RR + + RL+G  +P +  +  A    M  AYP+L + + LI   L  E+ RF 
Sbjct: 310 IMRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  +L  VL  +   ++++G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           QA+++QR RA+A ++ +   T +     +  +  AT+F GY +L                
Sbjct: 427 QAMDQQRQRAKAAAVSIDL-TLQGAIEQMAAELEATRFKGYQVLEQPC------------ 473

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                       V A+V  GE  E A +G  V++V D TPFY E+GGQ+GD G   G+G 
Sbjct: 474 -----------CVLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGEGS 522

Query: 539 ---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                +   D   +   +FVH   +ERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 GGNGVIVAVDDVSRHRNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++ S + Q GS +  D LRFD   S+ +T+ EL+ IE  +N  I ++  ++   M+
Sbjct: 583 ALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVEEMS 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A A+GA A+ G KY D VRVV          S  LCGGTHV++T EI L  IV+ESS
Sbjct: 643 IQEAKAAGAVAMFGEKYADVVRVVD-----VPGVSMELCGGTHVANTAEIGLFKIVAESS 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +D  +K L    K     ++ RV  + EE +  Q    
Sbjct: 698 VAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQKALT 757

Query: 776 KRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V            + +   +   +  V+   L++    L  ++     +++G 
Sbjct: 758 AARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQGLLDQLGDATAVVLGG 817

Query: 831 ----SKEKKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
               S E K  ++    + ++ +   A       AK  GGGGG GRP++AQ+GG +G   
Sbjct: 818 LPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGGG-GRPNLAQAGGRDGAAL 876

Query: 886 DQAIAGVASFLKK 898
           D A+      LK+
Sbjct: 877 DGALEAAKVELKQ 889


>gi|205830106|sp|Q0RF65|SYA_FRAAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 881

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/914 (35%), Positives = 487/914 (53%), Gaps = 54/914 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 1   MDTAEIRSRFLNHFARRGHTIVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLATPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQK VR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++LL   F   
Sbjct: 60  TSVQKVVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFK 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+++  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGA 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
              G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+
Sbjct: 174 AY-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++  + Q+TG +Y  +  + V  RV+ DH R+++ LIADG++P+N
Sbjct: 233 LQGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L  A+ T MG  YPEL+     I     +E
Sbjct: 293 EGRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  + D  +  +       L GD AFKL+DT+G P+D+  ++    GL+ 
Sbjct: 353 EASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +  + GAT F GY+ L        
Sbjct: 412 VDEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAI-VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                         +  S +V  + +  G  +     G +V VV D TPFYAE+GGQ  D
Sbjct: 464 --------------SRESGVVGLVGIADGAGLTVVGEGDEVGVVLDATPFYAESGGQEPD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    DG  +++ DVQ+    + +H   V  G LR    +   +D   RR +S +H+AT
Sbjct: 510 FGLLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV 
Sbjct: 570 HLVHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPVR 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +  +E+A   GA AL G KY D VRVV     D G ++  LCGGTHV+S+ ++  + +
Sbjct: 630 AFVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVKL 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SESSI AG RR+E + G  A  +L  +   +  L++ LK     +  RV +I    R  
Sbjct: 685 LSESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRDA 744

Query: 771 QLIHAKRK--LQLNVEDLSCHKIADVNFMSHIISEVDS----KELKSVMDALQKKIQSGI 824
           +    + +    L           DV  ++ + +EV +     +++ +   ++ ++    
Sbjct: 745 ERELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGRP 804

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++  +  +  + V++  +        A +L R S   L GG GGG+P +AQ GG N   
Sbjct: 805 AVVAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGNSEM 863

Query: 885 ADQAIAGVASFLKK 898
                A +   + +
Sbjct: 864 IPAVFAKLRGLVAE 877


>gi|169350062|ref|ZP_02867000.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552]
 gi|169293275|gb|EDS75408.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552]
          Length = 869

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/913 (36%), Positives = 505/913 (55%), Gaps = 63/913 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + +R  FL+FF+  GH++ PS SLIP +DPTL++ N+G+   K  F G  KP  
Sbjct: 1   MKQLTGNQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAALKKYFDGTIKPEN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDFAWELLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D+ +LYITV+D DEEA+  W  + G+    +++     NFW + E GPCGP SEIF
Sbjct: 117 WFAFDKDKLYITVHDHDEEAYNYWVDVIGVEPSHMLKTPG--NFWEIGE-GPCGPDSEIF 173

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE       G        E +RYIEIWNLVF Q+  Q      +   LP+ +IDTGM
Sbjct: 174 YDRGEKYDPEGLGLKLFYEELENDRYIEIWNLVFSQYNSQEGVDRNDYEELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++Q+   N+D D F  +I  +E++  + Y+ N  + +RVI DH+R+ +F +AD
Sbjct: 234 GLERITSIIQDGETNFDTDFFLPIIHEAEKLANVSYQENK-MAYRVIADHIRTVTFALAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G L  N GRGYVLRRI+RRA+ Y + +G  +  M +L+  +   M   Y  L +    I 
Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKQIGIEKAFMYNLVGVVSEIMKEFYDYLPEKVSYIS 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KTL  G  LL G++     D I++G  AFKLYDT+G P ++  +I    
Sbjct: 353 DLVKKEEEAFHKTLSNGEKLLSGLIKK-NSDGIISGKDAFKLYDTYGFPFELTLEIAQES 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D   F + L+ Q+ R+R   +   S T++K                         
Sbjct: 412 NLK-VDEEGFKEELKLQQMRSRGARVDNESMTSQK----------------------PDL 448

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           M  D     +  P ++      +V  + + G   ++       E+VFD T FYAE GGQ 
Sbjct: 449 MAFDLPSSFEYDPTNIR----GVVIGLFKDGVKTDQLN--DYGEIVFDVTTFYAEMGGQC 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    D  + ++ +V K      +H   +E G ++    L L ID + R +++ NH+
Sbjct: 503 ADTGIVYNDECKAKVVNVLKAPNQQHLHFVELESGSIKVGDVLTLEIDKEKRGKITANHT 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+L  AL  ++GSH++Q GS +  + LRFD TH + IT+ +LK++E  VND+I + + 
Sbjct: 563 ATHILQAALKEVIGSHINQAGSYVDDNRLRFDFTHFEKITNEQLKAVEQKVNDVIFKGID 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    M++E+A+ASGA AL   KY D VRVVSV     G +S  LCGG HV+++  I L 
Sbjct: 623 VEIANMSKEEALASGAMALFDEKYGDTVRVVSV-----GNYSKELCGGCHVTNSSNIGLF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            I +E S+ +GIRRIEA+TG+ A   L+ + E + +++S LK+  +  VV +V  + EE 
Sbjct: 678 KIETEESVGSGIRRIEAVTGKIAYEALVLEKETVDTISSILKLKNRKEVVNKVTSLTEEL 737

Query: 768 RKLQLIHAKRKLQLNV--EDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQKKIQSG 823
             ++        +LN        + I D+N +  +    +++S + K +   L+ KI SG
Sbjct: 738 NAVKKEVEALNSKLNALNAANRMNDIQDINGVKVLFVEEDMESNKAKQLAFDLRDKIDSG 797

Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++LV   +E K S  + V++D +     A D+ +    ++  G GGG+P  AQ G P  
Sbjct: 798 IVILVSKFEE-KCSYFVGVSKDYVASGIKAGDVVKKINAIV-DGRGGGKPDFAQGGCPVN 855

Query: 883 NKADQAIAGVASF 895
            K D     + +F
Sbjct: 856 EKIDTIKDELKNF 868


>gi|223937386|ref|ZP_03629291.1| alanyl-tRNA synthetase [bacterium Ellin514]
 gi|223893937|gb|EEF60393.1| alanyl-tRNA synthetase [bacterium Ellin514]
          Length = 908

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/952 (34%), Positives = 485/952 (50%), Gaps = 103/952 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              S IR +FL+FF+   H ++PSSSL+P + P L+FTN+GM  F  IF GQ+K      
Sbjct: 1   MTSSQIRQSFLDFFKSKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGQKKADVSKW 59

Query: 59  --------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
                         QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI  A
Sbjct: 60  AGAVPSLDTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKEAIDWA 119

Query: 111 WDLLTKEFDLDQRRLYITVYDED----------EEAFKLWKKIS---GLSAD-KIIRITT 156
           W+L+T+ +   + RLY TVY  D          +EA+ LW       GL     I+    
Sbjct: 120 WELVTEVWRFPKERLYATVYSPDKSLGDPSDFDQEAYDLWAAKFSAAGLDPKVHIVNGNK 179

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M +TGPCGPCSE+  D            ++     IEIWNLVF+QF        
Sbjct: 180 KDNFWMMGDTGPCGPCSELHVDLTPQGDTKGALVNKGTAECIEIWNLVFIQFNANPGGTF 239

Query: 217 FILPKMSIDTGMGLERMATVLQEKT----------NNYDIDLFKHLIQASEQVTGMKYEG 266
             LP   +DTGMG ER+ +++Q             +NY+ D+F+ +  A E+++G +Y  
Sbjct: 240 SPLPAKHVDTGMGFERVTSIMQGSHGFKDFANAKISNYETDIFRPIFDAIEKLSGKRYGS 299

Query: 267 --------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                            V  RVI DH+R+ SF IADGI P N  R YVLRRI+RRA+ Y 
Sbjct: 300 TLPKSGSTGDTEQEKVDVAFRVIADHIRTLSFSIADGIQPGNTDRNYVLRRILRRAVKYG 359

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           R LG+ EP    L+  L   MG  +PE+ + K  +++ +RSE+E F KTLDRG+ L +  
Sbjct: 360 RTLGFHEPFFYKLVDVLAETMGQVFPEIRERKQHVKDVIRSEEEAFNKTLDRGIELFNQE 419

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           ++H+     L G  AFKLYDT+G PLD+ + +   RGLA +D+  FN  ++EQ+ R++A 
Sbjct: 420 IAHVKPGHQLQGPFAFKLYDTYGFPLDLTELMARERGLA-VDVAGFNLLMDEQKKRSQAA 478

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    E I  S  E    T+FIG+D L+                            
Sbjct: 479 QKK------EVISLSQIETTVPTKFIGFDQLQAKT------------------------- 507

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                  +++E      K  VV D +  YAE GGQ+GDTG     G   ++ + QK   G
Sbjct: 508 -------KVLEVVGLKDKTAVVLDTSSAYAEMGGQVGDTGELSQGGKLWRVENTQKS--G 558

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
               H + +    +T   + LT+D + R  +  +H+ TH+LH A+  ++    SQ GS +
Sbjct: 559 NTWLHFLADGDAPQTGSEVELTVDRERRNAIQRHHTVTHILHWAIHEVVSREASQKGSFV 618

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTK 671
            PD L FD   S+P+T  ++  +E  VN+ I +N  V    +   D           G K
Sbjct: 619 GPDKLTFDFN-SQPLTPQQVADVEKLVNERILENAGVSWTEVLHADVKGRKDVMQFFGDK 677

Query: 672 YNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           Y DRVRVV +  + G +  +S  LCGGTH   TGEI L  I+ ES++ AG+RRIEA+ G 
Sbjct: 678 YGDRVRVVQIGGKAGELNGYSMELCGGTHTQGTGEIGLFRIIGESAVAAGVRRIEAVAGL 737

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLS 787
            A      + + +KS+A  +    G +  +++ +  + ++L  QL    +K   N     
Sbjct: 738 EAYGKATDEIQLIKSIAGKVNAPIGELEKKIDALLAQQKELERQLKAVNQKEAANTAKSL 797

Query: 788 CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             K A +N +  II  +   D   L+S+ DAL+ + +   ++++G +     +++  V+ 
Sbjct: 798 IGKAATLNGIPAIIENLGSADGDTLQSIADALKGQFKG--VVVLGGAANGAVALVASVSP 855

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +   +  A  + +  A ++ GG GGG+P  A+ GG + +K D+A+A     +
Sbjct: 856 EFTAKVQAGKIIQGIAPIV-GGKGGGKPDNARGGGKDVSKLDEAMAKAKGLI 906


>gi|111024085|ref|YP_707057.1| alanyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123144037|sp|Q0S0N7|SYA_RHOSR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110823615|gb|ABG98899.1| alanine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 890

 Score =  811 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/916 (35%), Positives = 482/916 (52%), Gaps = 60/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRT----LDIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  R+++TVY +D++A  +W+   G+   +I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERIWVTVYLDDDDARDIWRDEVGVPESRIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+       N +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GKEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY    ++ V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVIAKAEELSGRKYGAVHDDDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +G            + GD AF L+DT+G P+D+  ++  
Sbjct: 355 TVAVGEETAFLKTLTSGSKLFEGAAESVKASGKSTIGGDQAFALHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      G T+F G+  L   
Sbjct: 415 EAGLT-VDEEGFRTLMAEQRQRAKDDAQARKHAHADLTVYKELLDRGPTEFTGFHELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++ QG+ V  A +GQ VEV+ D++P YAEAGG
Sbjct: 473 ----------------------EAHVLALISQGQRVPVATAGQDVEVILDRSPLYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G G+R+++ DVQK A+ ++VH   V+ G L     ++  +D   R+  +  
Sbjct: 511 QIADLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQEGQLTEGDVVLAQVDAAWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    +T A+ + IE   N+ +A +
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YSVNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +G+RR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 NVTLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            R  +    + + Q  +           ++  V  ++    + V   +L+ ++  ++ + 
Sbjct: 747 LRVAEKELEQTRAQAVLAAAGTFVDKAQRVGPVLLVADSAPAGVGGNDLRGLVTDIRGRF 806

Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +   ++ L+G   + K   ++ V +   +    A DL +     +GG GG G+  MAQ 
Sbjct: 807 GTQPAVVALLG-DVDGKVPFVVAVNKAAQELGLAAGDLVKGFGPKIGGRGG-GKADMAQG 864

Query: 878 GGPNGNKADQAIAGVA 893
            G + +    A+  V 
Sbjct: 865 SGSDTSGIAAALDAVR 880


>gi|172040632|ref|YP_001800346.1| alanyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|205830039|sp|B1VDL4|SYA_CORU7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|171851936|emb|CAQ04912.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 888

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/920 (35%), Positives = 488/920 (53%), Gaps = 58/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F + F K+GH  +PS+SLI  +DP L+F N+GMVPFK  F GQE P +   
Sbjct: 1   MQTHEIRQRFTDHFVKSGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQETPPFGTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT      
Sbjct: 60  TSIQKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWTLLTNSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L+  RL++TVY++D+EA +LW  + GL  ++I R+   DN+W M   GPCGPCSEI+
Sbjct: 116 GLGLNPDRLWVTVYEDDDEAAQLWHDLVGLPTERIQRLGMEDNYWHMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGL 230
           +D+G    G   G + +  R+IEIWNLVFM+FE+   +      I   LPK +IDTGMG+
Sbjct: 176 YDRGPAY-GEDGGPAVDDSRFIEIWNLVFMEFERGETKPDGSFDIVGNLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E++TG +Y  +  + +  RVI DH R++  LI D
Sbjct: 235 ERLAFLLQGVDNVYETDLLRPVIDTAEKLTGTRYGTQDKDDIRFRVIADHSRTALMLILD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG    ++  LL  +   M  +YPE+ +    I 
Sbjct: 295 GVTPGNEGRGYILRRLIRRIIRSARLLGAQGAVIEQLLGTVREAMTPSYPEIEENWERIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E++ F KTL+ G  L +  L+        ++ G VAF L+DTHG P+D+ +++  
Sbjct: 355 SVGVTEEKAFLKTLESGSQLFEQFLTEARNSGTSVVPGAVAFSLHDTHGFPIDLTREMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              L  +D   F++ + EQ++RA+A S        +   +        T F GY+     
Sbjct: 415 EASLT-VDEAGFHELMAEQKARAKADSAAKKHVHADLSVYRAFIDSHPTHFTGYENTAD- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V  ++  G++ + A +GQ  +V+ DQTPFYAE+GG
Sbjct: 473 ----------------------EGKVLGLIVDGQLADRASAGQHAQVILDQTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G G   ++ DVQK A+ ++ H   V  G L     L   +D + R Q    
Sbjct: 511 QMADRGSLRGPGGLAKVVDVQKIAKKVWAHLIEVTEGELAIGELLEARVDQKWRHQARQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q GS   P  LRFD ++   +T  +L+ IE+  N  +  +
Sbjct: 571 HSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFSYGDQLTEKQLQQIEEIANSAVDTD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y  +VRVV +    GG  S  LCGG HV  + +I 
Sbjct: 631 YQVNTIETSLEEAKAMGAMALFGENYGKQVRVVEI----GGPFSMELCGGIHVDHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RRIEA TG  +  HL      + +LA+  K +   +  R++ +  +
Sbjct: 687 PISVLGESSVGSGVRRIEAYTGMDSFRHLAADRSLVANLAANFKATSEEIPERIDALTAK 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVM-DALQKK 819
            +  +    + + Q     +     S   ++ V  ++  +   + +KEL+SV  DA+ + 
Sbjct: 747 LKAAEKQVQQLRAQQLAAQVGSIVDSAADVSGVKVLTQNLGEGLGAKELRSVAQDAIARF 806

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ++L      +K   +       ++R   A DL +     +GG GG G+P +AQ  
Sbjct: 807 NSETAVVLFTSQDGEKVPFVAAANPQAVERGLKAGDLVKAFGAEVGGRGG-GKPALAQGS 865

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G + +  D  +A V   + +
Sbjct: 866 GSDASGVDAGLAAVQRLVNE 885


>gi|315037651|ref|YP_004031219.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
 gi|312275784|gb|ADQ58424.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112]
          Length = 879

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/919 (36%), Positives = 506/919 (55%), Gaps = 68/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++FK+W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +E Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++ DVQ       +H   +    +      +L +D + R  L  +
Sbjct: 508 ADHGNIYSQDGELVAKVIDVQHAPNDQNLHFVDLI-LPVEKGKEYILKLDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+K++E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  +   L ++   +K     N++ +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDNIQEDVKATKPDNIIDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        ++N         +  +  D+  +S I    +  +L+ + D  +   
Sbjct: 742 DLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +S +++L   + + KA+++I +  + L     A DL +++A + GGGGG GRP+MAQ+GG
Sbjct: 802 KSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIFGGGGG-GRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
                 + AI  V   + K
Sbjct: 860 KKPEGLNDAIKAVIDEISK 878


>gi|58336754|ref|YP_193339.1| alanyl-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227903315|ref|ZP_04021120.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
 gi|75358009|sp|Q5FLW6|SYA_LACAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58254071|gb|AAV42308.1| ala-tRNA synthetase [Lactobacillus acidophilus NCFM]
 gi|227868944|gb|EEJ76365.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796]
          Length = 879

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/917 (36%), Positives = 501/917 (54%), Gaps = 68/917 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N+      ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENDEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEIMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++       D+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIEKAKNSDDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  ++ Q+ RAR     L S   + +  +L      ++F           
Sbjct: 415 GLK-VDKKGFDAEMQAQKDRARKARGDLQSMGRQDV--TLMNIKDKSEF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                          +     + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------EYGVYEEPHAKLIDIVVDDKLVDKAN-GEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL ID + R  L  +
Sbjct: 508 ADHGGIYNQDGELVAKVTDVQHAPNDQNLHFVDLI-LPMEKGQEYVLKIDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELKS+E+ VN  I   
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPRELKSVEELVNQKIWDA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY D+VRVV +        SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----SDFSSEFCGGTHVDNTDQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K     N+V +++ I  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEVVKATKPENIVDKIDSIEN 741

Query: 766 EYRKLQL---IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E R  Q       K+  Q    ++     +  D+  ++ I       +L+ + D  +   
Sbjct: 742 ELRDSQKQVEALTKKINQAKAGEIFDNVKQAGDLTVIAAIADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +S +++L     + KA+++I + +  L     A DL + +A + GGGGG GRP+MAQ+GG
Sbjct: 802 KSDVLVLAA-ENDGKANMIISLDQRALDKGLKAGDLIKKAAPLFGGGGG-GRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFL 896
                 + AI  V   +
Sbjct: 860 KKPEGLNDAIKAVIDEI 876


>gi|325956136|ref|YP_004286746.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|325332701|gb|ADZ06609.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC]
 gi|327182944|gb|AEA31391.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118]
          Length = 879

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/919 (36%), Positives = 505/919 (54%), Gaps = 68/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++FK+W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +E Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++ DVQ       +H   +    +      +L +D + R  L  +
Sbjct: 508 ADHGNIYSQDGELVAKVIDVQHAPNDQNLHFVDLI-LPVEKGKEYILKLDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+K++E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  +   L  +   +K     N++ +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDDIQEDVKATKPDNIIDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        ++N         +  +  D+  +S I    +  +L+ + D  +   
Sbjct: 742 DLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +S +++L   + + KA+++I +  + L     A DL +++A + GGGGG GRP+MAQ+GG
Sbjct: 802 KSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIFGGGGG-GRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
                 + AI  V   + K
Sbjct: 860 KKPEGLNDAIKAVIDEISK 878


>gi|187933980|ref|YP_001885372.1| alanyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|205830030|sp|B2THN0|SYA_CLOBB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187722133|gb|ACD23354.1| alanine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 879

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/908 (34%), Positives = 503/908 (55%), Gaps = 46/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  + +R  +L FF+   H  L S SL+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FTKTNDLRDAYLNFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPKKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKCVR G    D+DNVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT   +L
Sbjct: 63  ITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVLEL 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F + 
Sbjct: 119 PKEKLYVTIYLDDDEAYEYWTTLTDVDKSHIFRLGKEDNFWEHGA-GPCGPCTEIHFSRT 177

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V+Q
Sbjct: 178 DEVPKNSEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K + ++ID  +++++    +  +KY  +N   V+ R+I DH+RS +F+I+D I+P+NEG
Sbjct: 238 NKNSIFEIDTLENILKEVGNLASVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  +  + +L   +  +  SAYP+L   K  I++ ++ E++
Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCSSAYPDLEVKKEYIKKVIKIEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD G+ +L+ ++S L ++  ++L G   FKLYDT G P+++ ++IL   GL+ +D
Sbjct: 358 KFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEGLS-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ ++EQR RAR+         T+     +      T F GY+             
Sbjct: 417 EDGFHEEMKEQRERARSARKTSNYMGTDVKTLDIISSEIETTFDGYE------------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      + + + VK +V   +  +    G    VV D TPFYAE GGQ+GDTG  
Sbjct: 464 ----------NDSLIAEVKTLVNGEDFADSITEGDNAVVVTDVTPFYAEMGGQIGDTGTI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + +I D +K   G  +H      G L+    + L +D   R  +  NH+ATHLL 
Sbjct: 514 YNDNFKGKILDTKKNIGGKIIHFVEAISGELKVGDKVTLEVDNARRENIKKNHTATHLLD 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS ++ D LRFD +H + +   EL  +E  VN+ I    PV T  M
Sbjct: 574 SALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTTEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  +   KY ++VRVV       G +S  LCGGTH+ +TG+I L  I+SE+
Sbjct: 634 DLQEAKNSGAVGIFDDKYAEKVRVVC-----AGEYSKELCGGTHIDNTGKIGLFKIISEN 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA+TG  A   +  + E LK ++  LK S+  +  ++++  +E ++ +   
Sbjct: 689 GIAAGTRRIEAVTGMEAYKLVNEKAELLKQISGKLKCSEKEITSKLDQQSKEMKEKEKEI 748

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +    +++        +  +N +++ + +VD + L+ + + ++  + + + +L  
Sbjct: 749 TILKSKFASMEINDIINSAKDVKGINIVAYALKDVDGEALRGLCEKVRDNVNNSLTLLTS 808

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K     +   E +    +   + +  A +LGGGGG GRP MAQ+GG    K  +A+
Sbjct: 809 SVDGKVVICAMADKEAVSKGAHCGKVIKEVATILGGGGG-GRPDMAQAGGKLPEKISEAL 867

Query: 890 AGVASFLK 897
             V   ++
Sbjct: 868 DSVYKIVE 875


>gi|86741900|ref|YP_482300.1| alanyl-tRNA synthetase [Frankia sp. CcI3]
 gi|123750882|sp|Q2J821|SYA_FRASC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|86568762|gb|ABD12571.1| alanyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 881

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/916 (35%), Positives = 489/916 (53%), Gaps = 58/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR+ FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 1   MDTAEIRSRFLNHFARRGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKCVR      D++NVG T RH +FF+M GNFSFG YFK  AI  A++LLT+ F   
Sbjct: 60  ASVQKCVRTV----DIENVGHTARHASFFQMCGNFSFGDYFKAEAIPFAFELLTEGFGFK 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+K+  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 ADDLWATVYLDDDEAEGIWRKL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRG- 172

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMSIDTGMGLERMATV 236
           C  G   G   + ERY+E+WNLVFMQ+E+             LP  +IDTGMGLERMAT+
Sbjct: 173 CAYGREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPIERELPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  +  + V  RVI DH R+++ LI+DG++P+N
Sbjct: 233 LQGVDNLYEIDISRPVLDAAGRLTGRRYGADPADDVRLRVIADHTRTAAMLISDGVVPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L   + + MG+ YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAIRNARLLGAHEPVMSELFAVVGSAMGTIYPELLDNAETITGVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           ++ F +TL  G  + D             L G+ AFKL+DT+G P+D+  ++    GL+ 
Sbjct: 353 EQAFAETLRTGTTIFDTAARQARSLGSTTLGGEAAFKLHDTYGFPIDLTLEMAAEAGLS- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + ++ QR  A+A       G  +   +  +  + G T F GY+ L        
Sbjct: 412 VDEAGFRRLMDRQRQAAKADRAARRIGNVDLSAFRPILARSGPTTFTGYEEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGD 530
                         +  S +V  +         A     +V VV D TPFYAE+GGQ  D
Sbjct: 464 --------------SRTSGVVGLVGIADGAGLAAAGEDTEVGVVLDATPFYAESGGQEPD 509

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    DG  +++ DVQ+    + +H   V  G LR  + +   +D   RR +S +H+AT
Sbjct: 510 LGRLRFDGGEVEVLDVQRPVPDLVLHRVRVLGGELRLGVEVFAEVDADRRRAVSRSHTAT 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED +N++  ++LPV 
Sbjct: 570 HLVHTAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLADVEDEINEVALRDLPVR 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +  +E+A   GA AL G KY D VRVV     D G ++  LCGGTHV+S+ ++  + +
Sbjct: 630 AFVTTQEEARRLGAMALFGEKYGDAVRVV-----DVGDYARELCGGTHVASSAQLGAVKL 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE+SI AG RR+E + G  A  +L  +   +  L++ LK     +V RV +I    R  
Sbjct: 685 LSEASISAGTRRVEGLVGLDAFRYLAREHLLVSQLSTALKARPDELVDRVTDIVGRLRDA 744

Query: 771 QLIHAKRK--LQLNVEDLSCHKIADVNFMSHIISEVDS----KELKSVMDALQKKIQSGI 824
           +    + +    L           +V  ++ + +EV +     +++ +   ++ ++    
Sbjct: 745 ERELERLRAAAVLAGAGALAEGAEEVAGVAVVTAEVPAGTAPDDVRLLALDVRGRLAGRP 804

Query: 825 IMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            ++     +   S ++VVT+D        A DL R S   L GG GGG+P +AQ GG N 
Sbjct: 805 AVVAVAKADG--SSIVVVTDDAARGRGLRAGDLVRQSWASL-GGKGGGKPDVAQGGGGNP 861

Query: 883 NKADQAIAGVASFLKK 898
                  A +   + +
Sbjct: 862 QLVPAVFARLRGLVAE 877


>gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 978

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/929 (34%), Positives = 491/929 (52%), Gaps = 73/929 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  SIR  FLEFF   GH++LPS+SL+P  DPT++ T +GM+ FK IF G+        T
Sbjct: 79  SGDSIRRRFLEFFASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCAT 137

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L  
Sbjct: 138 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIRWAWELSTIEFGLPA 193

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+++++Y++D+EAF++WK   G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 194 NRVWVSIYEDDDEAFEIWKNEVGVPVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 253

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +  R+IE +NLVFMQ+ +        L + +IDTG+GLER+A +LQ+  N
Sbjct: 254 RGSDDDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N GRGY
Sbjct: 314 NYETDLIYPIIAKISELANISYDSANEKAKTSLKVIADHIRAVVYLISDGVSPSNIGRGY 373

Query: 300 VLRRIMRRAMCYARLLGYTE--------PLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RRA+   + LG  E          +  +   +         ++      I E +
Sbjct: 374 VVRRLIRRAVRKGKSLGINEYRNGNLKGAFLPAVAEKVIELSTYIDSDVKLKAPRIIEEI 433

Query: 352 RSEDERFGKTLDRGLVLLDG-------VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           R E+  F KTL+RG  LLD        +         L+G  AF LYDT+G P++I  ++
Sbjct: 434 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKNTPYLDGKDAFLLYDTYGFPVEITAEV 493

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG++ ID+  F   +E QR +++A    +     +     + +    T+F+GYD L 
Sbjct: 494 AEERGVS-IDMKGFEVEMENQRRQSQAAHNVVKLTVEDDA--DITKNIADTEFLGYDSL- 549

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    ++VK+++  G+ V +   G KVE++ D+TPFYAE+
Sbjct: 550 ----------------------SARAVVKSLLVDGKPVIKVSEGSKVEILLDRTPFYAES 587

Query: 525 GGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           GGQ+ D G          +   ++++DVQK  + IFVH   V+ G L     +   +D  
Sbjct: 588 GGQIADHGFLYVNSDGNQENAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEAAVDAD 646

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   ELK IE  
Sbjct: 647 LRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNINRSLHDNELKEIERL 706

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGT 697
           +N  I     + T+++   DA  +GA A+ G KY++  VRVV V        S  LCGGT
Sbjct: 707 INRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGT 761

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV    V+
Sbjct: 762 HVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEKVI 821

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKEL 809
             VE + +E R  +   +  + +  V           +      +  +   + + D+  L
Sbjct: 822 ETVENLLKELRAAKKEASDLRSKAAVYKASVISKNAFTVGTSQTIRVLVDSMDDTDADSL 881

Query: 810 KSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           KS  + L   ++  + +++G S EK K S++   +  ++     A       AK+ GGGG
Sbjct: 882 KSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG 941

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G+P+ AQ+GG        A+      L
Sbjct: 942 G-GKPNFAQAGGRKPENLPSALEKAREDL 969


>gi|300934543|ref|ZP_07149799.1| alanyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 887

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/919 (35%), Positives = 487/919 (52%), Gaps = 58/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F++ F   GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFIKHFTNAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LL       
Sbjct: 60  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIKHAWALLINSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSEI+
Sbjct: 116 GFGLDPDRLWVTVYTDDDEAAEIWEKKVGVPAERIQRLGMADNYWSMGVPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   +  RYIEIWNLVFM+ E+     +        LPK +IDTGMG+
Sbjct: 176 YDRGPEH-GKEGGPIVDDTRYIEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ+  N Y+ DL + +I  +E++TG  Y  N  + V  RVI DH R+   L+ D
Sbjct: 235 ERVACILQDVENVYETDLLRPVIDEAERLTGATYGDNHTDNVRFRVIADHCRTGLMLMLD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +  ARLLG T   M  L+  +   M  +YPE+      I 
Sbjct: 295 GVTPGNEGRGYILRRLLRRIIRSARLLGATGTTMERLMDTVRQTMTPSYPEIADNWERIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
                E++ F KTL+ G  L +   +    +   +++G  AF L+DTHG P D+  ++  
Sbjct: 355 SVAVGEEKAFLKTLESGSQLFENAAAQAKSEGKSVVDGATAFSLHDTHGFPFDLTVEMAN 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G+  +D   F++ + EQ++RA+A +     G  ++  +        T F GY  +   
Sbjct: 415 EAGMT-VDEAGFHELMAEQKARAKADNNAKKMGHADQTIYRPFVDNHPTAFTGYTHIED- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V  I+++G++V+   +G + +++ D+TPFYAEAGG
Sbjct: 473 ----------------------ESAVLGIIKEGQLVDRVAAGDQAQIIVDRTPFYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G+     +TDVQK  + ++VH A V  G L     L  ++D   R Q    
Sbjct: 511 QMADRGTFRGESGAADVTDVQKVGKKVWVHFATVTGGELAVGQKLTASVDDAWRHQARQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q GS   P  LRFD  +   +T+ +L  IED  N  +  +
Sbjct: 571 HSGTHLIHAALRDVLGPTAVQAGSMNRPGYLRFDFQYGDQLTAEQLSRIEDIANAAVDSD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGG HV  + +I 
Sbjct: 631 YKVNTIETSLEEARAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGIHVEHSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ ESS+ +G+RRIEA TG  +   L G    +  LA+ LK     +  R++ +  +
Sbjct: 687 PIAVLGESSVGSGVRRIEAYTGMDSFRFLSGGKNVVADLAANLKTPSEELPERIDALTAK 746

Query: 767 YRKLQLIHAK---RKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            +  +    +   ++L   V DL      I  +  ++  +   V + +++++    + + 
Sbjct: 747 LKAAEKQIQQMRNQQLLAGVGDLVAKAETIGGIKVVAVQLPEGVSAGDVRTMATDAKARF 806

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            S   ++    S + K   +  VT+  +D+   A +L +   + +GG GG G+P MAQ  
Sbjct: 807 GSDAAVVFFTASDDGKVPFVAAVTDAAVDKGLKAGELVKTFGEKVGGRGG-GKPAMAQGS 865

Query: 879 GPNGNKADQAIAGVASFLK 897
           G +       +  V + ++
Sbjct: 866 GSDPAGIAAGLEAVKAMVE 884


>gi|312977883|ref|ZP_07789629.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05]
 gi|310895190|gb|EFQ44258.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05]
          Length = 879

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 495/918 (53%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT      L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +DE++F +W K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T  K  G    +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++      KD+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +  Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLVDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL +D + R  L  +
Sbjct: 508 ADHGDIYNQDGELVAKVTDVQHAPNDQNLHFVDLI-LPVEKGQEYVLKLDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  ELK++E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL  +KY D+VRVV +     G  SS  CGGTHV +T +I 
Sbjct: 627 IQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I SES++ AG+RRIEA+T ++A  +L  + + L  +   +K     N+V +++ +  
Sbjct: 682 IFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        ++N            +  D+  ++         +L+ + D  +   
Sbjct: 742 DLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A +L +++A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENAGKANMIIALDQKALDKGLKAGNLIKIAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
           N    + AI  V   + K
Sbjct: 861 NPAGLNDAIKAVIDEISK 878


>gi|226227321|ref|YP_002761427.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226090512|dbj|BAH38957.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 928

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/944 (37%), Positives = 510/944 (54%), Gaps = 108/944 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--YQ 59
            N S IR+ FL FF+KNGH + PSSSL+P +DPTL+FTN+GMV FK +F G E+     +
Sbjct: 1   MNASEIRSRFLAFFEKNGHAIRPSSSLVPADDPTLLFTNAGMVQFKKVFLGMEEAPDGKR 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             TT QKCVRAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK  AI+ AW+ +T++  
Sbjct: 61  RATTSQKCVRAGGKHNDLEQVGHTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFITEDLK 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD- 178
           + +  L +TV+ ED+EA +LWK ++ +  ++I  +   DNFW MA+TGPCGPC+EI+ D 
Sbjct: 121 IPREHLRVTVFHEDDEARQLWKDVADVPENRIYGLGAKDNFWQMADTGPCGPCTEIYVDL 180

Query: 179 --------------------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI 218
                               + E           E  R++EIWNLVFMQF++Q       
Sbjct: 181 AKLAADWAFPADATGEWTNTEIEDYSLDAFVEGAEAGRFLEIWNLVFMQFDRQADGTLVP 240

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------- 264
           LPK S+DTG GLER+A V+Q  TNN+  DLF+ LI   E V G+ Y              
Sbjct: 241 LPKPSVDTGAGLERIAAVMQGVTNNFHTDLFRPLIAKVEDVVGIGYPYRPGVGLGKAYAK 300

Query: 265 --EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
             +  +  + RV+ DH R+  FL+ADG+ P+NEGRGYVLRRI+RRA+ +A LLG  EP +
Sbjct: 301 DGQEIDPASFRVLADHARAVGFLLADGVFPSNEGRGYVLRRILRRAVRHAWLLGRREPTL 360

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--- 379
           +H++  L   M   YPEL   +  I ET R+E++RF  T+D G+   + +          
Sbjct: 361 VHVVEVLIDTMRDLYPELHVRRKHILETTRAEEDRFLTTIDAGMSRFEELAPAASTQGST 420

Query: 380 ---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
                L+G+ AF+LYDT G P+D+   +   RG   +DI  F ++L+ QR +++      
Sbjct: 421 TMRGTLSGEDAFRLYDTFGFPIDLTDLMARERGY-LVDIAGFERSLQAQRKQSQEDRKSR 479

Query: 437 GSGTTEKIW-------FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
               +   +          + +    +F+GY+                          + 
Sbjct: 480 QITVSADDFADPTHWTHDQQHQAALGRFVGYETTE-----------------------IE 516

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           +IV A       V +   G +V V+  +TPFYAE+GGQ+ D G   G+G  +++ +V+K 
Sbjct: 517 TIVTA-------VRQLPDG-RVAVMLRETPFYAESGGQVSDHGTITGEGWTVEVNEVRK- 567

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G           I+         +    RR    +H+ATHLLH AL  +LG HV Q G
Sbjct: 568 LDGRIAAIGSSTGEIIF--GRAHAVVPRDRRRDTERHHTATHLLHAALRKVLGDHVHQAG 625

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S +TPD LRFD TH  P+T+ +L +IE +VN  + Q+ PV TR  +  DA+A GA AL G
Sbjct: 626 SLVTPDRLRFDFTHHGPVTAEQLAAIEADVNAGVWQSAPVNTREESYVDAVAHGAMALFG 685

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY D VRVV +        S  LCGGTHV +T EI L+ +++ES + AG+RRIEA++G 
Sbjct: 686 EKYGDVVRVVEIPS-----LSVELCGGTHVRNTAEIGLVRVINESGVAAGVRRIEAVSGP 740

Query: 730 RARSHLMGQDEKLKSLASFLKVS-------QGNVVGRVEEIWEEYRKLQLIHAKR----- 777
           RA   L  ++  L  +AS LKV           +  +++ + +E ++L+    +      
Sbjct: 741 RAFQFLADRERALLQVASRLKVPMSGMTSGAEQIERKLDALMDERKQLEKRLEESLRGGG 800

Query: 778 --KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
                               F++  +   D K L+++ DA+++ + SG+ +L     + K
Sbjct: 801 AGGGLAQQLIAKAIDAGGTRFIAAKVDVPDVKALQALGDAVREALGSGVAVLGAALADGK 860

Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            ++L V T+D  DR   A  + R  A  + GG GGG+PHMAQ+G
Sbjct: 861 GALLAVATDDARDRGLRADAVVRDVAATV-GGRGGGKPHMAQAG 903


>gi|31793738|ref|NP_856231.1| alanyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638440|ref|YP_978664.1| alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224990934|ref|YP_002645621.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260205877|ref|ZP_05773368.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289575263|ref|ZP_06455490.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85]
 gi|41018172|sp|Q7TYB1|SYA_MYCBO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830151|sp|A1KLQ3|SYA_MYCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|31619332|emb|CAD94770.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE)
           (ALANINE TRANSLASE) (ALARS) [Mycobacterium bovis
           AF2122/97]
 gi|121494088|emb|CAL72566.1| Probable alanyl-tRNA synthetase alaS [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774047|dbj|BAH26853.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289539694|gb|EFD44272.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85]
          Length = 904

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/933 (35%), Positives = 491/933 (52%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  SE+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRNNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ+  N Y+ DL + +I    +V    Y+     + V +R+I DH R+++ LI
Sbjct: 234 VERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFER 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++
Sbjct: 354 ISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR
Sbjct: 414 AAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFD 516
                                    + +  I   G+ V          A  GQ+VE+V D
Sbjct: 473 S-----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++
Sbjct: 510 RTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  + 
Sbjct: 570 AAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  
Sbjct: 630 TQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + E  R  +    + ++               +I +V  ++  +S  + +
Sbjct: 746 SEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTA 805

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVL 863
            +L+S++  ++ K+ S   ++  I++ +  +V   V  +         A DL +  A  +
Sbjct: 806 ADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+  +AQ  G N    D A+  V S +
Sbjct: 866 E-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897


>gi|118469604|ref|YP_887342.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|205830154|sp|A0QWQ4|SYA_MYCS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118170891|gb|ABK71787.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 896

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/913 (35%), Positives = 473/913 (51%), Gaps = 70/913 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWTLLTNPVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY +D+EA  LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPERLWATVYLDDDEAIGLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G      G P ++E+  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEYGVEGGPEANED--RYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I     V    Y     ++ V +R+I DH R+++ +I
Sbjct: 234 IERVACLLQGVDNVYETDLLRPVIDKVAAVAPRGYGAGNHDDDVRYRIIADHTRTAAIII 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +   MG +YPEL+     
Sbjct: 294 ADGVSPGNEGRGYVLRRLLRRIIRAAKLLGVEQPVMGDLIATVRDAMGPSYPELVTDFER 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L +       K    +L+G  AF L+DT+G P+D+  ++
Sbjct: 354 INRIAVAEETAFNRTLASGSKLFEDAARATKKSGATVLSGSDAFTLHDTYGFPIDLTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL+ +D   F   + EQR RA+A +       T+   +      G T+F G+D L 
Sbjct: 414 AAEAGLS-VDQEGFRTLMAEQRQRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEVVFDQTPF 520
                                    + +  I   G+ V           +VE++ D+TPF
Sbjct: 472 ----------------------TSEATILGIFVDGKRVPVVSHDGLEADRVELILDRTPF 509

Query: 521 YAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           YAEAGGQ+ D G   G G     R  +TDVQK A  ++ H   VE G      ++   +D
Sbjct: 510 YAEAGGQIADEGTISGTGASGTARAAVTDVQKIARTLWAHRVNVESGEFVEGDTVTAAVD 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P++  +   IE
Sbjct: 570 PKWRRGATQGHSGTHMVHAALREVLGPNAVQAGSLNRPGYLRFDFNWQGPLSDDQRTQIE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  +  +  V T +   E A A GA A+ G +Y D+VRVV +    GG  S  LCGG
Sbjct: 630 EVTNQAVEADYEVHTFVTELEKAKAMGAMAMFGERYPDQVRVVEI----GGPFSLELCGG 685

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    V
Sbjct: 686 THVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEV 745

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
             RV  + E  +  +    + +L                +  V  ++  +S  + + +L+
Sbjct: 746 PARVANLVERLKAAEKELDRMRLANARAAAVNAVAGAETVGKVRLVAQRMSGGMSANDLR 805

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           S++  ++ K+ S   ++ L+   +      ++ V     D    A DL +  A  +  G 
Sbjct: 806 SLVGDIRGKLGSEPAVVALIAEGENDAVPFVVAVNPAAQDLGLRANDLVKQFAAPVN-GR 864

Query: 868 GGGRPHMAQSGGP 880
           GGG+  +AQ  G 
Sbjct: 865 GGGKADLAQGSGK 877


>gi|296170783|ref|ZP_06852355.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894598|gb|EFG74335.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 901

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/935 (35%), Positives = 487/935 (52%), Gaps = 74/935 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F   GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVTAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTNGVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++I+GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPDRIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+GE    GG P ++E+  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGEEFGVGGGPIANED--RYIEIWNLVFMQNERGEGTGKTDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I          Y+    ++ V +RVI DH R+++ LI
Sbjct: 234 VERVAFILQGVHNVYETDLLRPVIDLVAARAPRGYDAGRHDDDVRYRVIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVADFGR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V   +     + ++G+ AF L+DT+G P+++  ++
Sbjct: 354 IRRIAVAEETAFNRTLVAGSKLFDEVAGTTKAAGAKAISGNDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D I F + + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 AAEAGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG--------QKVEVVFD 516
                                    + +  I   G+ V     G         +VE+V D
Sbjct: 472 ----------------------SSEAKILGIFVDGKRVPVVTHGAHPDGAGAHQVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      ++V
Sbjct: 510 RTPLYAESGGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVV 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D + RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P++  + 
Sbjct: 570 AAVDPEWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLSEEQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+  N  +  +  V T     E A A GA A+ G  Y D VRVV +    GG  S  
Sbjct: 630 TQVEEVTNQAVQADFEVHTFTEQLEKAKAMGAMAMFGEAYPDEVRVVEI----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIH-----AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + E  +  +        A  +           +I +V  ++  +S  + +
Sbjct: 746 SDEVPARVAGLVERLKAAEKELERARLAGARAAAANAAAGAERIGNVRVVAQRMSAGMTA 805

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVL 863
            +L+S+   ++ K+ S   ++  I++ +  SV   V  +         A DL +  A V 
Sbjct: 806 GDLRSLAGDIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQELGIRANDLIKQLA-VT 864

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             G GGG+P +AQ  G + ++ D A+A V S + +
Sbjct: 865 VDGRGGGKPDLAQGSGKDPSRIDAALAAVRSEIAR 899


>gi|255015752|ref|ZP_05287878.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 873

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/919 (36%), Positives = 494/919 (53%), Gaps = 72/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+     M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMP-NLAQAMKK 732

Query: 763 IWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    R+  + +++    K ++ N +  +  + + ++  +K+V   ++ 
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKA 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A +
Sbjct: 793 ETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N      A+  V   +
Sbjct: 852 GGKNMEGLSIAVGAVKEAV 870


>gi|226366325|ref|YP_002784108.1| alanyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|226244815|dbj|BAH55163.1| alanyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 890

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 482/915 (52%), Gaps = 58/915 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K  H  +PS+SLI  +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAAHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++NVG T RH+TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRT----LDIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  R+++TVY +D+EA  +W+   G+   +I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERIWVTVYLDDDEARDIWRDEVGVPETRIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFMQ E+       N +    LPK +IDTGMG+
Sbjct: 176 FDRGPEF-GAEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY  + ++ V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVDNVYETDLVRPVIAKAEELSGRKYGVDHDDDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +G            + G+ AF L+DT+G P+D+  ++  
Sbjct: 355 TVAVGEEAAFLKTLTSGSKLFEGAAESVKASGKSTIGGEQAFALHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      G T+F G+  L   
Sbjct: 415 EAGLT-VDEEGFRALMAEQRQRAKDDAQARKHAHADLTIYKELLDRGPTEFTGFHELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++ QG+ V  A +GQ VEV+ D++P YAEAGG
Sbjct: 473 ----------------------EAHVLALISQGQRVPVATAGQDVEVILDRSPLYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G   G G+R+++ DVQK A+ ++VH   V+ G +     ++  +D   R+  +  
Sbjct: 511 QIADLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQDGQITEGDVVLAQVDAAWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    +T A+ + IE   N+ +A +
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A + GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YSVNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +G+RR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 NVTLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQKKI 820
            R  +    + + Q  +           ++  V  ++    + V   +L+ ++  ++ + 
Sbjct: 747 LRVAEKELEQTRAQAVLASAGTFVDKAERVGPVLLVADSAPAGVGGNDLRGLVTDIRGRF 806

Query: 821 Q-SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ++++    + K   ++ V++   +   +A DL +     +GG GG G+  MAQ  
Sbjct: 807 GTQPAVVVLLGDVDGKVPFVVAVSKAAQELGLSAGDLVKEFGPKIGGRGG-GKADMAQGS 865

Query: 879 GPNGNKADQAIAGVA 893
           G + +    A+  V 
Sbjct: 866 GSDTSGIAAALGAVR 880


>gi|269121339|ref|YP_003309516.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268615217|gb|ACZ09585.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 870

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/913 (35%), Positives = 515/913 (56%), Gaps = 61/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D TL+ T +GMVPFK+ F G+++  ++ +
Sbjct: 1   MTGNEIRKSFIDFFKSKEHKYFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVG T RH TFFEMLGNFSFG YFK  AI  +W+ +T+   LD
Sbjct: 60  TTYQKCIRT----NDLENVGVTTRHQTFFEMLGNFSFGDYFKREAIFWSWEYITEILKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+++V+ +D+EA+ +W K  G+  ++I+R+  +DN+W+    G CGPCSEI+ D GE
Sbjct: 116 SEKLWVSVFLDDDEAYDIWNKEVGVPEERIVRLGEDDNWWAAGPIGSCGPCSEIYIDLGE 175

Query: 182 CIPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +RY+EIWNLVF ++ +        LP+ +IDTG GLER+A V+Q+
Sbjct: 176 KLGCGNLDCKPGCDCDRYLEIWNLVFTEWNRLEDGSLIPLPEKNIDTGAGLERIAAVMQK 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           K +N+D DLF  +I  +E++  ++         ++I DH+R+++FLI DG+LP+NEGRGY
Sbjct: 236 KESNFDTDLFIPIINETEKILEVERNNKTDKALKIIADHVRAAAFLIGDGVLPSNEGRGY 295

Query: 300 VLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           +LR+++RRA   A     R+    +  +  L+P +   M  AYPE+      IE+ ++ E
Sbjct: 296 ILRKLIRRAFGVASTIKERIFEKEDIFLYRLVPVVAEIMKEAYPEMESKIDYIEKVMKIE 355

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+F  TL  G+ +L   +  L KD  +    +++FKLYDT+G P ++ +++L    +  
Sbjct: 356 EEKFTVTLKNGVEILKEEVEKLKKDGKDKFPSEISFKLYDTYGFPFELTKEVLEYEEIE- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +    F + LEEQ+ R+++    +     ++      EK+G T+FIGY+       +   
Sbjct: 415 VSEDEFLEKLEEQKIRSKSSKETISDMIKDEFIDEFYEKHGKTKFIGYEEKEAKAKILHI 474

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            K                                     E++FDQTPFYAE+GGQ+ DTG
Sbjct: 475 NKSHGSSN------------------------------YEIIFDQTPFYAESGGQVADTG 504

Query: 533 CAIG-DGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSAT 590
                D    ++ +V KK + +++H   + +GI+ +    L L ID   R+    NH+AT
Sbjct: 505 IINSQDLFEGKVVNVIKKKD-VYIHEVELIKGIIPKIGDELTLKIDKFKRKDTQRNHTAT 563

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH AL  +LGSHV Q+GS +  + LRFD +H + ++  ++++IE   N I+ +N+ + 
Sbjct: 564 HILHKALREVLGSHVEQSGSLVDSERLRFDFSHYEAVSPEQIEAIERIANQIVLENIELA 623

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               + E A A GA AL G KY D VRVV +        S  LCGGTHV STGEI L+ I
Sbjct: 624 VYNEDIETAKARGAMALFGDKYGDEVRVVEIP-----QFSIELCGGTHVKSTGEIGLINI 678

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SES I +G+RRI A TG ++   +   +E  K LA  LKV +  +   VE++ E Y+ L
Sbjct: 679 ESESGIASGVRRITATTGYKSLDFVNTLEESQKELAKSLKVEEKKIKEAVEKLKESYKDL 738

Query: 771 QLIHAKRK---LQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  +   +   L+  + DL  H  +I     +       D++ELK ++D ++ K++SG++
Sbjct: 739 EKDYNDLQMKFLKYEINDLMGHIIEINGTKVLIKGFENKDNEELKEIVDRVKDKLKSGVV 798

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++        A  L  V++DL  +  A D+ +  +K +  G GGGRP  AQ+GG  G K 
Sbjct: 799 LIGA--NNGNAMFLAGVSKDLTGKIKAGDIVKEVSK-IANGNGGGRPDFAQAGGKAGEKV 855

Query: 886 DQAIAGVASFLKK 898
            +A+     +L++
Sbjct: 856 YEALEHGKRYLEE 868


>gi|256391573|ref|YP_003113137.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357799|gb|ACU71296.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 889

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/922 (35%), Positives = 500/922 (54%), Gaps = 62/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L+FFQK GH ++PS+SLI  NDPT + T +GM PFK  F G++   +   
Sbjct: 1   MESAEIHRRWLDFFQKKGHTVVPSASLI-SNDPTTLLTIAGMAPFKPYFLGEQPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH +FF+M GNFSFG YFKE AI +AW+L T      
Sbjct: 60  TSVQKCVRT----LDIEEVGKTTRHGSFFQMCGNFSFGDYFKETAIPMAWELCTTPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  ++++TVY +D+EA ++WKK +G  A++I R+   +N+WSM   GPCGPCSE+F
Sbjct: 116 GFGLDPEKIWVTVYLDDDEAEEIWKK-AGFPAERIQRLGMKENYWSMGVPGPCGPCSELF 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G +   ERY+E WNLVFMQFE+    +         LP  SIDTG+GL
Sbjct: 175 YDRGPEF-GEAGGPAVNDERYMEFWNLVFMQFERGAGGDKGGFPILGELPSKSIDTGLGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+AT+LQ   N Y+ID  + ++  +  + G+ Y  +    V+ RV+ DH+++++ +I D
Sbjct: 234 ERLATILQGVNNLYEIDTSRAILDKAASIAGVTYGRDTRTDVSLRVVTDHVKTATMMIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GI P NEGRGYVLRR+MRRA+   RLLG     +  L+      MG AYPELI     I 
Sbjct: 294 GITPGNEGRGYVLRRLMRRAIRNMRLLGAHGATIKDLVEITIGAMGQAYPELIADASRIV 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F +TL  G  + + V          + +GD AFKL+DT G P+D+  ++  
Sbjct: 354 AVAVAEETSFLQTLRTGSAMFETVADEAKASGSAVFSGDQAFKLHDTFGFPIDLTLEMAS 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GL+ +D   F + ++EQR +A+A +    +G  +   +  L +  G + F GY  +  
Sbjct: 414 EAGLS-VDEEGFRRLMKEQRDQAKADARAKKTGHADMSAYRELLDAAGPSAFTGYHEV-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                    ++KA++  G++   A  G +VE+V D+TPFYAE G
Sbjct: 471 ---------------------SSEGLLKAMLVNGQVGSSAKPGDEVELVLDRTPFYAEGG 509

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +G+G   ++ DVQK    +  H AIV  G +         +D   R  +S
Sbjct: 510 GQLADHGLIRLGNGALAEVVDVQKPVGDLIAHRAIVRDGEVVLGAEAWGEVDTARRAAIS 569

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATH++H A   +LG   +Q GS  +P   RFD      +  + L  +E  VN+++ 
Sbjct: 570 RAHTATHMVHKAFRELLGETATQAGSENSPGRFRFDFASPGAVPHSVLADVEQRVNELLI 629

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L V  ++M++ +A A GA AL G KY DRVRVVSV     G  +  LCGGTHV +TG 
Sbjct: 630 DDLSVTAQVMSQPEAKAMGAMALFGEKYGDRVRVVSV-----GEWAHELCGGTHVDNTGR 684

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++SESSI +G+RR+EA+ G  A + L  +   +  LA  +K     +V RV  I 
Sbjct: 685 LGLVKLLSESSIGSGVRRVEALVGTDAYNFLAREHVLVSQLAEVVKARPEELVERVGGIM 744

Query: 765 EEYRKLQLIHAKRKL--QLNVEDLSCHKIADVNFMSHI----ISEVDSKELKSVMDALQK 818
            + R  +   +  K    L +        +DV+ ++ +         + +L+ ++  ++ 
Sbjct: 745 TKLRDAEKEISALKAGQLLQIAGSLVDGASDVHGVAVVTHQAPDGASADDLRKLVLDVRG 804

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ +   ++   +   +  V+++ T +        A +L R +AK LGGGGG G+  +AQ
Sbjct: 805 RLGTRPAVVAVAAAAGERPVVVIATNEGSRGLGLKAGELVRSAAKTLGGGGG-GKDDVAQ 863

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG +      A+ GV   + +
Sbjct: 864 GGGTDATAIPAALEGVGRAVAE 885


>gi|150009141|ref|YP_001303884.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298377115|ref|ZP_06987069.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|205830169|sp|A6LEZ8|SYA_PARD8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149937565|gb|ABR44262.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|298266099|gb|EFI07758.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 873

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/919 (36%), Positives = 494/919 (53%), Gaps = 72/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LK+  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKD--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+     M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMP-NLAQAMKK 732

Query: 763 IWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    R+  + +++    K ++ N +  +  + + ++  +K+V   ++ 
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKA 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A +
Sbjct: 793 ETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N      A+  V   +
Sbjct: 852 GGKNMEGLSIAVGAVKEAV 870


>gi|145220398|ref|YP_001131107.1| alanyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265]
 gi|145206562|gb|ABP37605.1| alanyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 893

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/921 (35%), Positives = 485/921 (52%), Gaps = 83/921 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y  
Sbjct: 9   MKS-SDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSR 67

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT  + L
Sbjct: 68  AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKL 127

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY +D+E+F++W++ + +  D I+R    DNFW M ETGPCGPCSEI  D  
Sbjct: 128 PEERLYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLT 187

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                G    + +  + IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K
Sbjct: 188 PD-GSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGK 246

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYE----GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           ++NYD D+F+ L     ++TG++Y         +  RVI DH R+ SF ++DG +P+NEG
Sbjct: 247 SSNYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEG 306

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YA+ LGY +P++  L+  +   MG  +PEL   +  +   +++E+E
Sbjct: 307 RGYVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEE 366

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TLDRG+ + +G++  +  +    L G+ AFKLYDT+G P D+ + +  + GL  +D
Sbjct: 367 SFLVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGL-QVD 425

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + ++EQ++RAR        G  E+  +       AT+F GYD L           
Sbjct: 426 GEGFERCMQEQKTRARQDRREKQRGGAEEGSWEWFSDLHATEFTGYDGLEA--------- 476

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                     I+  + S + + +V D+TPFYAE+GGQ GD G  
Sbjct: 477 -----------------------DASIIGISRSKKNLLLVLDRTPFYAESGGQTGDRGWI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHA----------IVERGILRTE-MSLVLTIDYQNRRQL 583
                RL++TD QK  +  FVH              +   +      +  ++D + R+  
Sbjct: 514 ETGEYRLEVTDTQKDGD-SFVHVVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLRQAT 572

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH  L   LG+HV Q GS + P+ LRFD +H   +T  E+ ++E  VND I
Sbjct: 573 ERNHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVNDCI 632

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q    +    +  +DAI  GA A  G KY D VRVV +        S  LCGGTHV + 
Sbjct: 633 RQAEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIPG-----ISVELCGGTHVDNV 687

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVE 761
           G+I L  IV ESS+ AG+RRIEA+TG+ A   +  +  +L  +   LK+        +V 
Sbjct: 688 GQIGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAEKVA 747

Query: 762 EIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            I EE R L+   A+ K      +L  +  +   +     ++ ++   D++ L+     L
Sbjct: 748 AILEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAAQML 807

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARL-------SAKVLGGGG 867
           +++      +L   S E K S+    ++  +     +A  L R                 
Sbjct: 808 RQQFPLSAGLLCS-SAEGKVSLAAFASDRAVKELGIDAGKLIRQAAAAVKGGGGGKA--- 863

Query: 868 GGGRPHMAQSGGPNGNKADQA 888
                  A +GG N    + A
Sbjct: 864 -----EFATAGGKNPEGMEDA 879


>gi|256841698|ref|ZP_05547204.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256736592|gb|EEU49920.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 873

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/919 (36%), Positives = 496/919 (53%), Gaps = 72/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI +FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEAFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+     M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L+++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMP-NLAQAMKK 732

Query: 763 IWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    R+  + +++    K ++ N +  +  + + ++  +K+V   ++ 
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKA 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A +
Sbjct: 793 ETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N      A+  V   +
Sbjct: 852 GGKNMEGLSIAVGAVKEAV 870


>gi|189183879|ref|YP_001937664.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|205830168|sp|B3CST3|SYA_ORITI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189180650|dbj|BAG40430.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 889

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/899 (43%), Positives = 539/899 (59%), Gaps = 40/899 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             N++ IRTTF+EFF+K GH    SSSL+P NDP+L F N+G+V FK+     E   Y  
Sbjct: 4   FLNINQIRTTFIEFFKKYGHHHASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSR 63

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFD 119
           V T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG    K   +QL W+ LTKE  
Sbjct: 64  VVTCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWNFLTKELF 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D+ RL +TVY  D E  KLW+ I+GL   +IIRI T+DNFWSM   GPCGPC+EIF+D 
Sbjct: 124 IDEDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDH 183

Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G+ IPGGLPG+ +E G RY+EIWN+VFMQ+EQ N+  R  L K  IDTG GLER+ATVLQ
Sbjct: 184 GDKIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQ 243

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
              +NYDIDLFK+LI   E +T +K  G    +HR+I DHLR+S+FLIADG++P+N+GRG
Sbjct: 244 GVYDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRG 303

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRIMRRAM     LG  EP+M  L+  L  EMG  Y EL   + LI   L++E+E+F
Sbjct: 304 YVLRRIMRRAMNQIHQLGCKEPVMHLLVQGLINEMGDFYKELRVRQELITYLLKNEEEKF 363

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL +GL LL+    +L     L+G +AFKLYDT+G P D+ QDIL  R ++ I+   F
Sbjct: 364 KTTLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRSIS-INKTEF 422

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +Q + EQ++RAR    G GS   + +W  LKE++ AT+F+GY L +              
Sbjct: 423 DQNMLEQQNRARQLWKGQGSNKEQLLWEKLKEEFRATEFVGYSLCQ-------------- 468

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTG 532
                       IV +++Q  + VE     Q      +  ++ +QTPFY ++GGQ+GD G
Sbjct: 469 ---------AEGIVVSLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQIGDIG 519

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               +   + +TD  K      VH   +  G +     + + ID Q R QL I+HSATH+
Sbjct: 520 IIKNNECTIHVTDTIKLFGCTHVHICKIVSGKINLNAVVHMAIDKQYRTQLQIHHSATHI 579

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG+H+ Q GS +  D LRFDV+H   I+   L  IE+ VN+II  N  V  R
Sbjct: 580 LHAALREILGNHIIQKGSLVAYDYLRFDVSHPTSISKDLLTKIENRVNEIILNNTAVKLR 639

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           IM  + AIA GA AL   KY D VR +S+ E  D   +S  LCGGTHV  TG+I    I+
Sbjct: 640 IMPFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRIL 699

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES+I AG+RRIEAI G+          E L  +A    V++  ++ +++ I EE   L+
Sbjct: 700 SESAIAAGVRRIEAIAGKHVIKQARQNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLK 759

Query: 772 LIHAKRK---LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K   L L  +D+      I  +  +   I + D + ++  +    K IQ+ +++
Sbjct: 760 KQLHQLKYNQLILCEKDIQNMADNIGKIKLVYKNIEDYDLQIVRKAVSNTTKNIQNLVMV 819

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++  + +KK++++I V++++ ++  A +L +     + GG GGG   +AQ G    +K 
Sbjct: 820 VIS-NNDKKSTIIIGVSDNITNKIQANNLVKEIINYI-GGSGGGSATLAQIGCQYTSKL 876


>gi|159037443|ref|YP_001536696.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|205830198|sp|A8LXY8|SYA_SALAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157916278|gb|ABV97705.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 892

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/928 (35%), Positives = 498/928 (53%), Gaps = 72/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L  F+ NGH ++PS+ L   +DP L+F  +GM+ F   F GQ+   Y+  
Sbjct: 1   MKTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAWDL TK     
Sbjct: 61  VSVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWDLATKSVDAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+++W+ + G+ AD+I+R    DNFWSM   GPCGPCSE+F
Sbjct: 117 GFGLDPERIWPTVYLDDDEAYEVWRSV-GVPADRIVRRGKADNFWSMGIPGPCGPCSELF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G + + +RY+E WNLVFMQFE+     +        LP  +IDTGMGL
Sbjct: 176 YDRGPEY-GLEGGPAVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----------NNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + ++  + ++TG +Y             + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILDRAAELTGKRYGAHSGHVASESHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  M  LLP     M  +YPEL
Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPL 398
                 I +   +E++ F  TL  G  +LD  ++         ++G  AF+L+DT+G P+
Sbjct: 355 AADFGRIADYAYAEEDAFLSTLRAGTTILDTAIAESRTAGRRAISGAQAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +G+  +D   F + + +QR+RA+A +    +G  +   + ++ ++ G   F
Sbjct: 415 DLTLEIANEQGM-QVDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  +                          S V+A++ +      AV G  VE+V D 
Sbjct: 474 TGYHEV-----------------------SRESTVRAVLGEAGPRAAAVEGDTVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRAGETGFAEIDA 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L+ +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ +  +L V   + +  +A   GA AL G KY ++VRVV V     G ++  LCGGT
Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V 
Sbjct: 686 HVARSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + QL          +  +V  ++++           ++++
Sbjct: 746 DRVEQTVSQLRDAEKELEKLRAQLVLGGAAALAAQATEVRGVAYVGTEAPEGASGNDVRT 805

Query: 812 VMDALQKKIQSGIIMLVGISK--EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ +I      +V ++     KAS+++ V +    R  +A DL + +      G G
Sbjct: 806 LAQEIRGRIDPARPAVVAVAARSNGKASLVVAVNQAARSRGLSAADLVKAAFA----GRG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG P +AQ GG    +A   +  V + +
Sbjct: 862 GGSPELAQGGGLPAAEAPGLLRTVENAI 889


>gi|155371881|ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|151553989|gb|AAI48084.1| AARS protein [Bos taurus]
 gi|296478238|gb|DAA20353.1| alanyl-tRNA synthetase [Bos taurus]
          Length = 968

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/971 (32%), Positives = 477/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAGEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F+    E+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTALIAEEKGL-VVDMDGFD----EERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K             +     + V A+ +    VEEA +GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYSYH--SDSSGTYVFESAVATVMALRRDRMFVEEASTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ  D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVR-GGYVLHIGTL-YGSLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I    PV T   +   A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL    + +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLCVVEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFRENLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSSPNQPLVILEVESGASAKALNEALKLFKMHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  + + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|30688660|ref|NP_680210.2| EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/
           ligase, forming aminoacyl-tRNA and related compounds /
           nucleic acid binding / nucleotide binding [Arabidopsis
           thaliana]
 gi|322510075|sp|Q9FFC7|SYAP_ARATH RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS;
           AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName:
           Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein
           EMBRYO DEFECTIVE 86; Flags: Precursor
 gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 978

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/929 (34%), Positives = 492/929 (52%), Gaps = 73/929 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  SIR  FLEFF   GH++LPSSSL+P  DPT++ T +GM+ FK IF G+        T
Sbjct: 79  SGDSIRRRFLEFFASRGHKVLPSSSLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCAT 137

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L  
Sbjct: 138 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPA 193

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+++++Y++D+EAF++WK   G+S ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 194 NRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 253

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +  R+IE +NLVFMQ+ +        L + +IDTG+GLER+A +LQ+  N
Sbjct: 254 RGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N GRGY
Sbjct: 314 NYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIGRGY 373

Query: 300 VLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RRA+   + LG             +  +   +         ++      I E +
Sbjct: 374 VVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRIIEEI 433

Query: 352 RSEDERFGKTLDRGLVLLDG-------VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           R E+  F KTL+RG  LLD        +         L+G  AF LYDT G P++I  ++
Sbjct: 434 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEITAEV 493

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG++ ID+  F   +E QR +++A    +     +     + +    T+F+GYD L 
Sbjct: 494 AEERGVS-IDMNGFEVEMENQRRQSQAAHNVVKLTVEDDA--DMTKNIADTEFLGYDSL- 549

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    ++VK+++  G+ V     G +VEV+ D+TPFYAE+
Sbjct: 550 ----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAES 587

Query: 525 GGQLGDTGCA--IGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           GGQ+ D G      DG      ++++DVQK  + IFVH   V+ G L     +   +D  
Sbjct: 588 GGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEAAVDAD 646

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   EL+ IE  
Sbjct: 647 LRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECL 706

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGT 697
           +N  I     + T+++   DA  +GA A+ G KY++  VRVV V        S  LCGGT
Sbjct: 707 INRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGT 761

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV   +V 
Sbjct: 762 HVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVT 821

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKEL 809
            RVE + EE R  +   +  + +  V        +  +      +  +   + + D+  L
Sbjct: 822 NRVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSL 881

Query: 810 KSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           KS  + L   ++  + +++G S EK K S++   +  ++     A       AK+ GGGG
Sbjct: 882 KSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG 941

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G+P+ AQ+GG        A+      L
Sbjct: 942 G-GKPNFAQAGGRKPENLPSALEKAREDL 969


>gi|293400450|ref|ZP_06644595.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305476|gb|EFE46720.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 893

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/915 (36%), Positives = 505/915 (55%), Gaps = 61/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  FL++F+K+GH + P +SLIP NDPTL++ N+G+   K  F G  KP  
Sbjct: 20  MKNLTGNQIRQLFLDYFKKHGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGTVKPEC 79

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  +
Sbjct: 80  PRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEE 135

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ RLYITVY +DEEA+ +W    G+    I++    DNFW + E GPCGP +EIF
Sbjct: 136 YIGFDKDRLYITVYIDDEEAYDIWTNEIGVDPSHILKTA--DNFWQIGE-GPCGPDTEIF 192

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE          L     E +RYIE+WN VF QF+ +     ++   LP+ +IDTGM
Sbjct: 193 YDRGEAYDPEGLGEKLFFEEMENDRYIEVWNNVFSQFDAKEGVARKDYKELPQKNIDTGM 252

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-NNIVNHRVIVDHLRSSSFLIA 287
           GLER+  ++Q    N+D DLF  LI A EQ T M+YE   N +  RVI DH+R+ +F +A
Sbjct: 253 GLERLTCLVQNGETNFDTDLFLPLIHACEQYTSMRYEDAENKMAFRVIADHIRTVTFALA 312

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG L ANEGRGYVLRR++RRA+ + R L      M  L+P +   M   YP + +    I
Sbjct: 313 DGALFANEGRGYVLRRVLRRAVRFGRKLKIEGAFMYKLVPVVYEIMKDFYPYIEEKIDYI 372

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E+ +++E+ERF  TL  G  LL  V+     +++L+G  AFKLYDT+G PL++  +I   
Sbjct: 373 EKLVKAEEERFHATLADGEKLLLDVMEKNKDNKLLDGVTAFKLYDTYGFPLELTCEIAEE 432

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G   +D+  F++ +++QR RAR     + S +++     L      ++FIGYD      
Sbjct: 433 SGY-QVDVQGFDEEMKKQRERARNAREDVESMSSQSA--DLMAFTQDSKFIGYDE----- 484

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V A+ + G+ V+      + +++ + T FYAE+GGQ
Sbjct: 485 ------------------RTCDAQVIALFKDGKQVDAIS--DEGDIILNTTVFYAESGGQ 524

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G  +GD +  +I +  K      +H  ++E G L     L L +D + R  ++ NH
Sbjct: 525 IGDSGSFMGDALG-RIVNTVKAPHKQHLHKVVIEEGCLHVGSKLQLAVDNKKRDIITSNH 583

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  ++G+H+ Q GS ++ + LRFD TH + ++  +LK IE  VN  I+++ 
Sbjct: 584 SCTHLLQSALKKVVGNHIQQAGSFVSDEYLRFDFTHFEKVSVQQLKEIEQLVNRFISEHH 643

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV    M  E+A  SGA AL   KY D VRVV++     G  S   CGG HV++T EI +
Sbjct: 644 PVSKVEMPIEEAKQSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGI 698

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766
             I+SE SI +GIRRI A TG  A      +++ L+ +A  LK+    NV  +VE++  E
Sbjct: 699 CKIISEESIGSGIRRITAKTGYSAYEEFAAEEKTLRHIADDLKMKSIVNVDTKVEQVLHE 758

Query: 767 YRKLQLIHAKRKLQL--NVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQ 821
             +L+   A  + ++     +   H++ + N    +   +   D+  LK +   ++ + +
Sbjct: 759 NAQLKKELAALQSEMFTLKANELIHEVKECNGRHVLIKRMDGADANALKDIASTIKAQKE 818

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             I+ L  +  +K   V       + D     DL + +A +L  G GGGR  +AQ+GG +
Sbjct: 819 HVIVFLASVCNDKVVFVAGADKLAVADGIKCGDLVKEAA-MLCDGKGGGRADLAQAGGKD 877

Query: 882 GNKADQAIAGVASFL 896
             K D+A+  + + L
Sbjct: 878 VTKVDEAVEFIKNKL 892


>gi|301310907|ref|ZP_07216836.1| alanine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300830970|gb|EFK61611.1| alanine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 873

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/919 (36%), Positives = 494/919 (53%), Gaps = 72/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVAKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+     M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L ++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMP-NLAQAMKK 732

Query: 763 IWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    R+  + +++    K ++ N +  +  + + ++  +K+V   ++ 
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKA 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A +
Sbjct: 793 ETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N      A+  V   +
Sbjct: 852 GGKNMEGLSIAVGAVKEAV 870


>gi|160915324|ref|ZP_02077537.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991]
 gi|158433123|gb|EDP11412.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991]
          Length = 874

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/911 (35%), Positives = 491/911 (53%), Gaps = 59/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL++F   GH + P +SL+P NDPTL++ N+G+   K  F G EKP    + 
Sbjct: 5   TGNQIRQMFLDYFASKGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKNNRIA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPQWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY++VY +D +A+++W ++ G+    I++  T  NFW + E GP GP SEIFFD+G
Sbjct: 121 PKEKLYVSVYTDDHDAYRIWTEVCGVDPSHILK--TEGNFWEIGE-GPGGPDSEIFFDRG 177

Query: 181 ECI-PGGLPG----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLER 232
           E   P GL         E +RYIE+WN+VF QF+ + +    E   LP+ +IDTGMGLER
Sbjct: 178 EEYDPEGLEEKLFFEEMENDRYIEVWNVVFSQFDCKPELDRSEYKELPQKNIDTGMGLER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGIL 291
           +  ++Q    N+D DLF  +I  +E+ T   Y+   N +  RVI DH+R+ +F +ADG L
Sbjct: 238 LVCLVQGGETNFDTDLFLPIIHETEKYTSCSYQVNENKMAFRVIADHIRTVTFALADGAL 297

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            +NEGRGYVLRR++RRA+ + + L      M  L+P +   M   YP L +    I + +
Sbjct: 298 FSNEGRGYVLRRVLRRAVRFGKKLKIEGAFMYKLVPVVYEIMQDFYPYLGEKLDYIAKLV 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+ERF  TL  G  L+  V+    + + ++G  AFKLYDT+G P ++  ++    G  
Sbjct: 358 KAEEERFQATLSDGEKLMREVMERNKETKTIDGATAFKLYDTYGFPFELTLEMAEESGY- 416

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F   +++Q+ RAR       S +++     L      + F+GYD          
Sbjct: 417 FVDKDGFQAEMKQQKERARNAREEQESMSSQSA--DLMNCTLESTFVGYDAC-------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + G  V+E V  +  +V+FDQT FYAE+GGQ+GDT
Sbjct: 467 ---------------CCDARVIALFKDGVKVDELV--EDGDVMFDQTVFYAESGGQVGDT 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      +   + +  K      +H   +  G L     + L +D + R  ++ NHS TH
Sbjct: 510 GTI-SKAVEAVVENTVKAPHKQHLHRVHINAGALHVGDEVSLKVDEKRRAVITSNHSCTH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  ++G H++Q GS ++ + LRFD TH + ++  +L++IE+ VN+ IA +  V  
Sbjct: 569 LLQSALKRVVGEHIAQAGSFVSDEYLRFDFTHFEKVSEEQLRNIENLVNEFIAGHYSVSK 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M  E+A  SGA AL   KY D VRVVS+     G  S   CGG HV++T EI +  I+
Sbjct: 629 VEMPIEEAKQSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGVCKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKL 770
           SE SI +GIRRI A TG  A       D+ L ++A+ LK+    N+  +V  + EE  +L
Sbjct: 684 SEESIGSGIRRITAKTGYDAYKEFAAGDQMLHAIAADLKMKGIANLEAKVANVVEEANEL 743

Query: 771 QLIHAKRK---LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   A  +   L L   DL     +      +   +S  D   LK + + L+ K +  ++
Sbjct: 744 KKQLATLQSQMLALKANDLENTIEECNGHKLLFANLSGADGNALKDIANNLKAKYEDIVV 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            L   S++K   V       + +     DL R +A ++  G GGGRP +AQSGG + +K 
Sbjct: 804 FLASASEDKITFVAAAGKAAVANGVKCGDLVRQAA-MICDGKGGGRPDLAQSGGKDPSKC 862

Query: 886 DQAIAGVASFL 896
           ++A+  V + L
Sbjct: 863 EEAMKFVKNML 873


>gi|119961931|ref|YP_948021.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|119948790|gb|ABM07701.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 918

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/927 (35%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+P Y  
Sbjct: 27  MKS-QEITKRWVDFFVNKGHTAVPSASLVSS-DPSLLFTVAGMVPFIPYLTAREEPPYSR 84

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT     
Sbjct: 85  ATSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDD 140

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L   RL++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI
Sbjct: 141 GGYGLPAERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEI 200

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           ++D+G    G   G   +  RYIEIWNLVFMQ++ +N + +        LP+ +IDTG+G
Sbjct: 201 YYDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLG 259

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           +ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+R
Sbjct: 260 MERLAMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIR 319

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +
Sbjct: 320 SALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVV 379

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLD 399
                 I     +E++ F +T+  G   L+  ++      + L+G  AF L+DT+G P+D
Sbjct: 380 ETDFARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPID 439

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    GL  +D   F   + EQR RA+A + G   G  +   +      G T F G
Sbjct: 440 LTLEMAEEAGL-QVDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTG 498

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L G                        + V+ IV  G  V  A +G ++E+V ++TP
Sbjct: 499 YDELEG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETP 535

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G + ++  +   +D + 
Sbjct: 536 FYAEAGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRER 595

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  
Sbjct: 596 RHAAEQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVS 655

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V T++M   +A A GA AL G  Y   VRVV ++    G  S  LCGGTHV
Sbjct: 656 NIAIRNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHV 711

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R
Sbjct: 712 SNTSLIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADR 771

Query: 760 VEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEV-DSKELKSVM 813
           +     + +  +       K +L     +L  +    A V  ++H   +V  + +L+++ 
Sbjct: 772 ISSTLNKLKATEKELDRLRKEQLAAAAANLVGTAKDAAGVRVVAHDAGQVGGADDLRNLA 831

Query: 814 DALQKKIQSGI--IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             L+ ++ S    + + G+S ++   ++            A  L RL+A +LGGGGG G+
Sbjct: 832 LDLRNRLGSEASTVAVAGVSNDRPVILIATNEAAREAGVKAGALVRLAAGILGGGGG-GK 890

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
             +AQ GG +  K  +A+  V   + K
Sbjct: 891 DDVAQGGGTDAGKVSEALTAVVDAIAK 917


>gi|205830258|sp|A4SGJ6|SYA_PROVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 885

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/921 (35%), Positives = 485/921 (52%), Gaps = 83/921 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y  
Sbjct: 1   MKS-SDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT  + L
Sbjct: 60  AADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RLY TVY +D+E+F++W++ + +  D I+R    DNFW M ETGPCGPCSEI  D  
Sbjct: 120 PEERLYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHIDLT 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                G    + +  + IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K
Sbjct: 180 PD-GSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGK 238

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYE----GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           ++NYD D+F+ L     ++TG++Y         +  RVI DH R+ SF ++DG +P+NEG
Sbjct: 239 SSNYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEG 298

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRRI+RRA+ YA+ LGY +P++  L+  +   MG  +PEL   +  +   +++E+E
Sbjct: 299 RGYVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEE 358

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  TLDRG+ + +G++  +  +    L G+ AFKLYDT+G P D+ + +  + GL  +D
Sbjct: 359 SFLVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGL-QVD 417

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F + ++EQ++RAR        G  E+  +       AT+F GYD L           
Sbjct: 418 GEGFERCMQEQKTRARQDRREKQRGGAEEGSWEWFSDLHATEFTGYDGLEA--------- 468

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                     I+  + S + + +V D+TPFYAE+GGQ GD G  
Sbjct: 469 -----------------------DASIIGISRSKKNLLLVLDRTPFYAESGGQTGDRGWI 505

Query: 535 IGDGIRLQITDVQKKAEGIFVHHA----------IVERGILRTE-MSLVLTIDYQNRRQL 583
                RL++TD QK  +  FVH              +   +      +  ++D + R+  
Sbjct: 506 ETGEYRLEVTDTQKDGD-SFVHVVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLRQAT 564

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH  L   LG+HV Q GS + P+ LRFD +H   +T  E+ ++E  VND I
Sbjct: 565 ERNHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVNDCI 624

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q    +    +  +DAI  GA A  G KY D VRVV +        S  LCGGTHV + 
Sbjct: 625 RQAEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIPG-----ISVELCGGTHVDNV 679

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVE 761
           G+I L  IV ESS+ AG+RRIEA+TG+ A   +  +  +L  +   LK+        +V 
Sbjct: 680 GQIGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAEKVA 739

Query: 762 EIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            I EE R L+   A+ K      +L  +  +   +     ++ ++   D++ L+     L
Sbjct: 740 AILEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAAQML 799

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARL-------SAKVLGGGG 867
           +++      +L   S E K S+    ++  +     +A  L R                 
Sbjct: 800 RQQFPLSAGLLCS-SAEGKVSLAAFASDRAVKELGIDAGKLIRQAAAAVKGGGGGKA--- 855

Query: 868 GGGRPHMAQSGGPNGNKADQA 888
                  A +GG N    + A
Sbjct: 856 -----EFATAGGKNPEGMEDA 871


>gi|254383594|ref|ZP_04998944.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342489|gb|EDX23455.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 889

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/906 (36%), Positives = 493/906 (54%), Gaps = 62/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP     
Sbjct: 1   MESAEIRRRWLSFFEERGHAVVPSASLIA-DDPTLLLVNAGMVPFKPYFLGETKPPAPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY +D+EA  +W++  G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+     +        LP  +IDTG+GL
Sbjct: 176 YDRGPDF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG+ Y       V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVLYGAAQGTDVSMRVVADHIRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLVDVVINTMGQQYPELVTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K +  G  +LD  +S        +L+GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKAVKGGTNILDTAVSETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  GAT+F GY   +G
Sbjct: 415 EQGLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGYATTQG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  + + DVQ+   G+ VH   V+ G +    S    ID   RR ++
Sbjct: 511 GQLADQGRIKLDSGAVIVVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVSRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +ND+++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   IM+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEIMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIASML 745

Query: 765 EEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQK 818
            + +  +    K + +              D+  ++ ++  V     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIRGVALVVGSVPDGTGADDLRKLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ     ++ L   + ++  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGDRPAVVALFTTANDRPLTVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVA 864

Query: 876 QSGGPN 881
           Q GG N
Sbjct: 865 QGGGQN 870


>gi|327281303|ref|XP_003225388.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 969

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/974 (33%), Positives = 484/974 (49%), Gaps = 97/974 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F+ FF +N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFINFFVENQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A + A DLLTKE
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKFALDLLTKE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        +  ++W  + GL  D+I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGNEAAGLQPDLDCKQIWLDL-GLPEDRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEMHYDRIGG-RDASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGCRPYTGQVGEDDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 304 TITVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAPRGFFATLVDVVVESLGGAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL+RG  +LD  +  LG ++++ GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLNRGRRILDRKIQSLGDNKVIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G G  + I   +           
Sbjct: 424 LTGLIAEEKGLK-VDMEGF----EEERKAAQLKSQGKGGGDEDLIILDIYAIEEL----- 473

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVS--SIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
               +G K   +  K      P       S  + VKA+ ++   VEE  +GQ+  +V DQ
Sbjct: 474 --RSKGLKATDDSLKYNYASDPSGTYEFQSPVATVKALRREKVFVEEVSTGQECGIVLDQ 531

Query: 518 TPFYAEAGGQLGDTGCAIG-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           T FYAE GGQ+ D G  +        D     + +VQ    G +V H     G L+   +
Sbjct: 532 TCFYAEQGGQIYDEGYLVKEEDEGSEDKTEFTVKNVQ--VRGGYVLHVGTVYGSLKVGDT 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L ID   RR +  NH+ATH+L+ AL  +LG    Q GS + PD LRFD T    +++ 
Sbjct: 590 VRLYIDEPRRRPVMSNHTATHILNFALRAVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQ 648

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----- 684
           E+K  E  VN +I +   V  +      A A  G  A+    Y D VRVVS+        
Sbjct: 649 EIKKAEAIVNQMIQEAKVVYAKECALAAAKAIQGLRAVFDETYPDPVRVVSIGIPIEDML 708

Query: 685 ------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                  G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   
Sbjct: 709 ADPSNAAGAITSVEFCGGTHLQNSSHAGHFVIVSEEAIAKGIRRIVAVTGAEAQKALRKV 768

Query: 739 D---EKLKSLASFLKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVE 784
           +   + L  L + +KV      +V   + ++ E        +++K +L  + + L+  ++
Sbjct: 769 ESLKKLLADLEAKVKVQTAPNKDVQHEIADLGESLATAVIPQWQKDELRESLKALKKIMD 828

Query: 785 DLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGII 825
           DL     AD+                     +  + S   +K L   +  L+        
Sbjct: 829 DLDRACKADIQKRVLDKMKQLIEAHPNQPLVILEMESGASAKALNESLKLLKTHSPETAA 888

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ML  +  +  K + L  V +D++ +   A +  +  +  L  G GGG+   AQ+ G N +
Sbjct: 889 MLFTVDNDAGKITCLCQVPQDVVSKGLKASEWVQQVSG-LMDGKGGGKDLSAQATGKNTD 947

Query: 884 KADQAIAGVASFLK 897
              +A+     F K
Sbjct: 948 CLKEALEVATDFAK 961


>gi|261880084|ref|ZP_06006511.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270333239|gb|EFA44025.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 886

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/932 (35%), Positives = 480/932 (51%), Gaps = 86/932 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RTNSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEFLVDVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D   LY+TV++         D+EA K W K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPADLYVTVFEGSPEENIPRDDEAAKYWSK--HLPEDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    + +  + IEIWN+VFMQF +++      L    IDTGM
Sbjct: 179 SEIHIDSRPAEEKAKKPGRELVNMDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHR 273
           G ER+  +LQ K +NYD D+F+ +I+  E  +G KY               +    +  R
Sbjct: 239 GFERLVRMLQGKNSNYDTDIFQPIIKEIEIHSGKKYGFTTPSGKDGKAADNQEKIDIAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           VI DHLR+ +F IADG LP N   GYV+RRI+RRA+ YA   L      M  LLP L  E
Sbjct: 299 VIADHLRTVAFSIADGQLPGNAKAGYVIRRILRRAVRYAYTFLDQRHAFMFKLLPVLIQE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390
           MG  YPEL   + LI   ++ E++ F +TL++G+ LL+G +  L +     L+G  AF+L
Sbjct: 359 MGGTYPELPAQQELISRVMKEEEDSFLRTLEKGIQLLNGDMEELREQGKTQLDGTKAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    GL+ +D   FN  + +Q+ RAR       +      W  LKE
Sbjct: 419 FDTYGFPLDLTELICRENGLS-VDEQGFNAQMTKQKERARNA-----AAVENSDWVVLKE 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 473 --GEQEFVGYDYTEYECNITRYRKVTQKKKSF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EV+ D TPFY E GGQ+GD G  + +   + + D  K+     VH              
Sbjct: 503 YEVMLDHTPFYGEMGGQVGDQGVLVNEAETIDVIDT-KRENNQSVHIIRTLPKDPNAG-- 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  +LG HV Q GS ++ D LRFD  H + +T  
Sbjct: 560 FMACVDTDKRTASAANHTATHLLDYALKKVLGDHVEQKGSYVSADTLRFDFAHFQKVTDE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN ++ ++ P+        E+A   GA AL G KY D+VRVV          
Sbjct: 620 ELREVERLVNRLVREDHPMDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H  STG I +  I+SESS+ AG+RRIEA+TGQ+    +   ++ ++ +    
Sbjct: 674 SCEFCGGIHAKSTGCIGMFKILSESSVAAGVRRIEAMTGQKCEEAMYTLEDTVRYIKGVF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI--ISEVD 805
             +  ++   +E+  EE  +++      + Q           ++  VN M+ +  +  V 
Sbjct: 734 N-NSKDLKSTIEKFIEENAQMKKEMESFRSQAVDRTAKTLAERVQTVNGMNVVKAVIPVQ 792

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVL 863
               K ++  +++ I + +I ++G     K  + ++++ED++     NA  + R +AK++
Sbjct: 793 PASAKDIVFKIRELIPANLICVIGSVYNDKPMLSVMLSEDMVKEHNLNAGQMVREAAKLI 852

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            GG GGG+PH AQ+GG N +    A+  V   
Sbjct: 853 QGG-GGGQPHYAQAGGKNKDGLSVAVDKVVEL 883


>gi|94986300|ref|YP_605664.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|205830044|sp|Q1IW89|SYA_DEIGD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94556581|gb|ABF46495.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 885

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/915 (37%), Positives = 497/915 (54%), Gaps = 61/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ--EKPVY-- 58
             + IR  FL FF+  GH  LPS SLI   DPT +FT +GM PFK  F G   + P Y  
Sbjct: 6   TTAEIREKFLSFFESKGHLRLPSHSLIAP-DPTTLFTVAGMQPFKPQFMGAPAKFPGYGE 64

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
            + VTT QKC+R G    D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT  
Sbjct: 65  NRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKREAILWAWEFLTSP 120

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCG 170
           +   +D  R+Y+T+Y++D EAF  W +  GL  D I R   ++NFW          GPCG
Sbjct: 121 EWLGMDPARMYVTIYEDDNEAFGYWTQDVGLPEDHIHRFGADENFWPADAPAKGPNGPCG 180

Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCSEI++D+G             + E  R++E+WNLVF Q+++Q+      LP  +IDTG
Sbjct: 181 PCSEIYYDRGPHYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDGGVLADLPFKNIDTG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER+A+V+Q+  + Y  D+F+ L++   +++G  YEG   V+HRV+ +H+RS +  IA
Sbjct: 241 MGLERVASVVQDVPDFYSNDVFRPLVEKVAELSGKPYEGEVSVSHRVVAEHIRSVAMTIA 300

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+  +N GRGYV+R+I+RRA  +A LLG  EP +  L+P +   MG AYPEL+  +  +
Sbjct: 301 DGVALSNTGRGYVIRKILRRASRHAYLLGLHEPTLYRLVPLVVQAMGGAYPELVTEEARV 360

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +R+E+ERF KTL+ G+  L G+L  + +  +L G+ AF LYDT+G PLD+ ++I   
Sbjct: 361 TAAIRAEEERFLKTLESGMQRLSGLLEGMERGAVLPGEEAFLLYDTYGFPLDLTKEIAEE 420

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            G++ ++   + ++LE  +  ARA S    S        +L E    TQF+GYD L    
Sbjct: 421 YGIS-VNEAEYAESLERAQETARAASKYGKSELFGGSQEAL-EGLPPTQFVGYDELE--- 475

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                   V A+V  GE ++  ++G +  VV  +TPFYAE GG+
Sbjct: 476 --------------------AQGEVLALVGAGERLDHLMAGSEATVVLSRTPFYAEGGGE 515

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG    +G R  + D +K   GI++H  +VE G L   +++   +  + R+ +  +H
Sbjct: 516 VGDTGVLEWEGGRGLVRDTRKTPAGIWLHDVLVEEGELTPGVTVRGVVSSE-RQAIQRHH 574

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLLH AL  +LG  V Q GS + P+ LRFD TH   +T+ EL  +E  V+  +  N 
Sbjct: 575 TATHLLHAALRAVLGPGVRQAGSLVAPERLRFDFTHGAALTADELGQVERLVSRWVTANF 634

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTG 703
           PV  R M   +A A+GA AL G KY D VRVV VE    + D  V S  LCGG HV+ TG
Sbjct: 635 PVTWREMPLAEAKAAGATALFGEKYGDTVRVVRVEGGIPFGDATVTSMELCGGAHVTRTG 694

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    IVS+ ++ AG+RRIEA+ G+ A + +  Q   +  ++  L  S   +  RV  +
Sbjct: 695 DIGAFVIVSDENVAAGVRRIEALAGEAATAWVRAQLNNVHRVSGLLNTSPDTLETRVIGL 754

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             + R  Q   A+ + QL    +         ++         +S ++  EL+   D L 
Sbjct: 755 QSQLRAAQQETAQARRQLAEAQMGGASTQQVRELGGFKVAVLRLSGIEGGELRGAADKLL 814

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            +  + + ++       K  V+      +    +A  L    A   GG GG GRP MAQ+
Sbjct: 815 DQSGADLAVIAS----DKGLVVKASKTAVARGAHAGQLIGKLAAAGGGKGG-GRPDMAQA 869

Query: 878 GGPNGNKADQAIAGV 892
           G  N   A  A+   
Sbjct: 870 GIGNPEAALAALDTA 884


>gi|262384031|ref|ZP_06077167.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|262294929|gb|EEY82861.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
          Length = 873

 Score =  808 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/919 (36%), Positives = 495/919 (53%), Gaps = 72/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D EA   W++   L  D I+    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      G    +++  + IEIWNLVFMQF ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +LNG  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   DI  FN+A+++Q+ RAR       +      W +LKE  G  +F+GYDL 
Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERARNA-----AAIETGDWITLKE--GECKFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECEAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D  ++ + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVAKLPKDVTATFTAKINVKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V + I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+     M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGS------SVELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L+++ ESSI AG+RRIEA+T + A   +  Q + ++ L + +     N+   +++
Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMP-NLAQAMKK 732

Query: 763 IWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE    K Q+    R+  + +++    K ++ N +  +  + + ++  +K+V   ++ 
Sbjct: 733 SIEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKA 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     + + GI  + K ++++++++DL+    +A  + + +AK + GG GGG+PH A +
Sbjct: 793 ETTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHIQGG-GGGQPHFATA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N      A+  V   +
Sbjct: 852 GGKNMEGLSIAVGAVKEAV 870


>gi|282859190|ref|ZP_06268312.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588009|gb|EFB93192.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 885

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/935 (35%), Positives = 494/935 (52%), Gaps = 88/935 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA + W K   L AD II    +DNFW M + GPCGPC
Sbjct: 121 DPKDLYVTVFEGSPEENIPRDDEAAQYWLK--HLPADHIIDGNKHDNFWEMGDIGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D + E    G+PG    +++  + IEIWN VFMQF ++       L    IDTGM
Sbjct: 179 TEIHIDSRPENERNGIPGRELVNKDDPQVIEIWNNVFMQFNRKADGSLEPLAMNVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHR 273
           G ER+  +LQ K +NYD D+F+ +I+  E ++  KY               +    V  R
Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIKEIEAISNFKYGFTTPSGKDGECANDQEKVDVAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           VI DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  LLP L  E
Sbjct: 299 VIADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQREAFMFKLLPTLVRE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKL 390
           MG AYPEL   + LI   ++ E++ F +TL++G+ LL G +  L       L+G  AF+L
Sbjct: 359 MGGAYPELPAQQELIGRVIKEEEDSFLRTLEKGISLLSGAMDELKAHNQTELDGKEAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   +D   F++ + +Q++RAR  ++          W  +K+
Sbjct: 419 FDTYGFPLDLTELICRENGYT-VDEKQFDEEMAQQKARARNAAV-----VENGDWMIVKD 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 473 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   +++ D  K+     VH  IV+      E  
Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGVLVSEDETIEVIDT-KRENNQSVH--IVKEMPKDIEAD 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++P  LRFDV+H + IT  
Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQVLGEHAEQKGSYVSPTTLRFDVSHFQKITDE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN++I ++  +        ++A   GA AL G KY D+VRVV          
Sbjct: 620 ELRQVERLVNELIREDYILDEHRNTPIDEAKKMGAVALFGEKYGDKVRVVKFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H +STG I    IVSESS+ AGIRRIEA+TG  +   +  Q++ L  L +  
Sbjct: 674 SCEFCGGIHATSTGRIGFFKIVSESSVAAGIRRIEALTGANSEEAIYDQEDTLTELKAMF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEV 804
             +  ++   V++  +E+  ++      + Q              ++  +N +  ++  V
Sbjct: 734 N-NPKDLKAVVQKYIDEHEAMKKEMESSRQQGVARHAKALIEGVEQVDGLNIVKAVL-NV 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
           D+   K ++  +++ I   ++ ++G   + +  + I++++D++     NA  + R +A++
Sbjct: 792 DAASAKDIVFKVREAITEKLVCVLGSVNDNRPQLSIMLSDDMVKEGGKNAGKIIREAAQL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG + +    A+      LK
Sbjct: 852 IKGG-GGGQPHYAQAGGKDASNLSAAVDKALELLK 885


>gi|17861846|gb|AAL39400.1| GM03058p [Drosophila melanogaster]
          Length = 966

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/972 (31%), Positives = 472/972 (48%), Gaps = 87/972 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   LLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 QRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +       + 
Sbjct: 421 VDLTQLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDVHAISQLQE- 474

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            G      +   K D  V  ++         +S + A+  + + V E  SGQK  +V D+
Sbjct: 475 QGVPPTNDTFKYKYDA-VSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDK 533

Query: 518 TPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           T FYAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L I
Sbjct: 534 TNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHI 592

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   
Sbjct: 593 DVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKT 652

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEY 683
           E    +++ +N+P+  +      A    G  ++    Y D VRV+S            + 
Sbjct: 653 EQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDS 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   +
Sbjct: 713 EAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQ 772

Query: 744 SLASFLKVSQGN---------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVEDL 786
            +   LK +  N          V  + E+ E+         +K ++ +  + L+  ++D 
Sbjct: 773 EIVR-LKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDK 831

Query: 787 SCHKIADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIML 827
                A V+                 + ++ ++++    K L + +  ++ ++     M 
Sbjct: 832 ERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMF 891

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K 
Sbjct: 892 LSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKV 950

Query: 886 DQAIAGVASFLK 897
           D+ +   + F +
Sbjct: 951 DEIVQLASKFAQ 962


>gi|242092594|ref|XP_002436787.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor]
 gi|313471753|sp|C5Z7K4|SYAP_SORBI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags:
           Precursor
 gi|241915010|gb|EER88154.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor]
          Length = 961

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/928 (35%), Positives = 501/928 (53%), Gaps = 72/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FLEF+   GH++LPSSSL+P +DPT++ T +GM+ FK IF G+E       T
Sbjct: 64  SGDAIRRRFLEFYAARGHKILPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKEPRRVPCAT 122

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT RH TFFEMLGNFSFG YFK+ A   AW+L TKE+ L  
Sbjct: 123 TSQKCIRT----NDIENVGRTARHQTFFEMLGNFSFGDYFKKEATAWAWELATKEYGLPA 178

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+++D EAF +W    G+  ++I R+   DNFW+   TGPCGPCSEI++D    
Sbjct: 179 ERLWISVFEDDNEAFDIWHNEVGVPKERIKRMGAEDNFWTSGATGPCGPCSEIYYDFYPE 238

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  N
Sbjct: 239 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 297

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +L++DG++P+N GRGY
Sbjct: 298 NYETDLIFPIIEKAASMAMVSYAKTDDATKTNLKIIGDHMRAVVYLVSDGVIPSNIGRGY 357

Query: 300 VLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G             +  L   + +      P++   +  I   L
Sbjct: 358 VVRRLIRRVVRMGRLIGIRGDGHGNSEGAFLPSLAEVVISLSTEIDPDVESRRRSILGEL 417

Query: 352 RSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + E+ RF +TL+RG  LLD +L        + G    L+G   F LYDT+G P++I  +I
Sbjct: 418 QREELRFVQTLERGEKLLDELLDGAVLSAGNNGDKPSLSGKDLFLLYDTYGFPVEITAEI 477

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+  +DI  F+  +E QR +++A    +      +    + +    T F+GYD L 
Sbjct: 478 ASERGVT-VDIEGFDIEMENQRKQSQAAHNVVKLSVGNET--EIIKSIPDTVFLGYDSL- 533

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   S++V+ ++  G  V E   G +VE++ D+TPFYAE+
Sbjct: 534 ----------------------SASAVVRGLLVNGNPVNEVSEGSEVEILLDRTPFYAES 571

Query: 525 GGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           GGQ+GD G    +G         ++I DVQK    IFVH   +++G +     +   +D 
Sbjct: 572 GGQVGDNGFLYVNGGEDRSQAAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEVDACVDA 631

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R+    +H+ATHLL  AL +++GS  SQ GS +  D LRFD    +P++  EL  IE 
Sbjct: 632 KLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDRLRFDFNFHRPVSEGELTRIEL 691

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I+    + T++M  +DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 692 LVNQWISNAAHLETKVMALQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSLELCGGT 746

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D  ++ L S LKV   +V 
Sbjct: 747 HVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFIDYVCARDNYMRRLCSSLKVKAEDVN 806

Query: 758 GRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
           GRVE I EE R        L+   A  K        +  +  +V  +   + +VD+  LK
Sbjct: 807 GRVETILEELRATRNEVSSLRSKIAVLKAASLASKATTVEPQNVRIVVENMGDVDADGLK 866

Query: 811 SVMDALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868
           S  + L   +Q    +++G S  + K S++   +  ++     A       AK+ GGGGG
Sbjct: 867 SAAEYLIGTLQDPAAVILGSSPGDGKVSLVAAFSPAVVKMGLQAGKFVGGIAKLCGGGGG 926

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G+P+ AQ+GG        A+    + +
Sbjct: 927 -GKPNFAQAGGRKPENLPDALEKARAEI 953


>gi|149196141|ref|ZP_01873197.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149140988|gb|EDM29385.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 899

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/951 (34%), Positives = 482/951 (50%), Gaps = 108/951 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M +   IR ++ +FF+   H L+ S+SL+P + P L+FTN+GM  F  IF G++K  Y  
Sbjct: 1   MLSSKEIRQSYFDFFKSKQHTLVSSASLMP-DSPNLLFTNAGMNQFVPIFLGEKKCPYTP 59

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDL++VG    HHTFFEMLGN+SF  YFK+ AI+ AW+ LTK  
Sbjct: 60  GRATDTQKCIRAGGKHNDLEDVGMDTYHHTFFEMLGNWSFNDYFKKEAIEYAWEYLTKVC 119

Query: 119 DLDQRRLYITVYDED----------EEAFKLWKKISGL----SADKIIRITTNDNFWSMA 164
            + + RLY TVY  D          +EA+ +W  I           I+     DNFW M 
Sbjct: 120 KIPKERLYATVYQPDKSSGDPADFDQEAYDIWADIFKADGLDPKVHIVNGDKKDNFWMMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+E+  D            + + ++ IEIWNLVF+Q           LP  ++
Sbjct: 180 ETGPCGPCTELHIDLTPAGDTKGSLVNMDTDKCIEIWNLVFIQMNANPDGTFSDLPTKNV 239

Query: 225 DTGMGLERMATVL---------QEKTNNYDIDLFKHLIQASEQVTGMKY----------- 264
           DTGMG ER+A+++             +NY+ D+F  +      ++G KY           
Sbjct: 240 DTGMGFERLASIILNTKNFTDFNGIISNYETDIFTPIFDKLTDISGKKYTSTLPEKNELG 299

Query: 265 ---EGNN----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                N+     +  RVI DH+R+ SF IADGI P N  R YVLRRI+RRA+ Y R +G 
Sbjct: 300 YFVAANDQEMVDIAFRVIADHIRTLSFSIADGIQPGNGDRNYVLRRILRRAVRYGRTIGL 359

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            +P    L+  L  +MG  +PEL + +  ++  ++SE+E F +TLDRG+ L +  +S L 
Sbjct: 360 EKPFFYELVDTLADQMGEIFPELAKGRQHVKTVIKSEEEAFNRTLDRGINLFESEISKLK 419

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           K + ++   AF+L D  G PLD+ + +   +G   +D+  F + + EQR RARA      
Sbjct: 420 KGDSISAAFAFRLADEQGFPLDLTELMAREQGYK-VDVDGFEKLMNEQRDRARAAQKK-- 476

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
               E I  S  +    T+FIGY                      +  N   + VK +++
Sbjct: 477 ----EIISLSEIKTTEPTEFIGY----------------------EEDNSNEAQVKEVIK 510

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                        + V+FD +  Y E GGQ+GD+G     G   QI D QK   G    H
Sbjct: 511 MK---------NGLAVIFDSSVCYPEMGGQVGDSGTIAAGGKLYQIKDTQK--NGDATLH 559

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +V          ++++ D + R ++  NH+ATHLLH AL  +LG HV Q GS +  D L
Sbjct: 560 YLVGDEAPEEGEKVIVSYDIERRDKIRKNHTATHLLHKALQDLLGEHVEQKGSLVAADYL 619

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H + + + E++ +E  +N+ +  N  V T + N ++A A GA AL G KY+D VR
Sbjct: 620 RFDFSHHQGLKADEIEKLELLINEKVILNSAVETHLKNIDEAKAMGAMALFGEKYDDDVR 679

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +        S  LCGGTHV  TG+I L  I SE S+ AGIRRIEAITG  A  + + 
Sbjct: 680 VVKI-----DDFSLELCGGTHVKRTGDIGLFKITSEGSVSAGIRRIEAITGMDAVKYALN 734

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI--HAKRKLQLNVEDLSCHKIADVN 795
            ++ L+ LA  LK     +  RV+++    + LQ     AK KL     D    K  ++N
Sbjct: 735 SNKVLQGLAGDLKCKVDTIPERVDKLSSNAKSLQKELDEAKSKLVALEADSLLEKAEEIN 794

Query: 796 FMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNA 852
            +  ++ +VD+    LK +  +L+KKI SGI++    S   K  +   V++DL    F A
Sbjct: 795 GIKVLMLKVDNDAATLKDMTHSLRKKIGSGIVVFAS-SANGKVVLTSGVSDDLTKQGFKA 853

Query: 853 VDLARLSAKVL------GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            ++  ++AK +              P  AQ+GG        A   V   ++
Sbjct: 854 GEIVSIAAKQVGGGGGGA-------PTFAQAGGRMPEAIPSAFKAVKELIE 897


>gi|295425855|ref|ZP_06818535.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
 gi|295064458|gb|EFG55386.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664]
          Length = 879

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/918 (36%), Positives = 497/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  FL+FF+++GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF+  AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRNEAITWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY TVY +D ++ K+W+K +G+  + I ++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 DKSKLYCTVYPKDIDSQKVWEK-AGMPKNHIFKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ    N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQGAPTNFETDLFLPIIHATEEMTPGKKYGVNKADTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNNGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD +++   K  ++ ++G  AFKL+DT+G P ++  +     
Sbjct: 355 IQNEEERFQATLDSGLTLLDELIAKAKKSDNKTISGKDAFKLFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  ID   F++ ++ Q+ RAR     L S   + +  +L      ++F           
Sbjct: 415 GLK-IDKKGFDKEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSEF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  IV   ++V +A  G++  +VFD+TPFYAE GGQ+
Sbjct: 461 ------------EYGKYEEDHAKLIDIVVNDKLVNKA-DGEEAILVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    L      VL ID + R  L  +
Sbjct: 508 ADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDII-LPLEKGQEYVLKIDRERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I + 
Sbjct: 567 HTATHLLHAALRQVLGEHTHQAGSLVEPDYLRFDFTAMEPMTPREIKSVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T +   E+    GA AL   KY D+VRVV V     G  SS  CGGTH  +T +I 
Sbjct: 627 IQVKTTVTTPEEGKKMGALALFNGKYGDKVRVVQV-----GDFSSEFCGGTHCDNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I+SES++ AG+RRIEA+T ++A  +L  +   L  +   +K      ++ +++ +  
Sbjct: 682 IFKIISESAVGAGMRRIEAVTSKKAYEYLADRSTLLDDIQEHVKATKPDGIMDKIDSLES 741

Query: 766 EYRKLQLIHA---KRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
                Q       K+  Q    ++     K  D+  ++         +L+ + D+ +   
Sbjct: 742 SLHDAQKQIEDLTKKINQAKAGEIFDNVQKAGDLTVIAATADVSGMNDLRELADSWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAKNDGKANMIISLNKKALDKGLKAGDLIKKAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
                D+AI  V S + K
Sbjct: 861 KPEGIDEAIKTVISEISK 878


>gi|24582809|ref|NP_523511.2| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|45552267|ref|NP_995656.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|75027177|sp|Q9VLM8|SYAC_DROME RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|7297398|gb|AAF52657.1| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|45445248|gb|AAS64737.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster]
          Length = 966

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/973 (31%), Positives = 473/973 (48%), Gaps = 89/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   LLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 QRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q 
Sbjct: 421 VDLTQLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQL 472

Query: 458 IGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +   +   K     V  ++         +S + A+  + + V E  SGQK  +V D
Sbjct: 473 QEQGVPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLD 532

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           +T FYAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L 
Sbjct: 533 KTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
            E    +++ +N+P+  +      A    G  ++    Y D VRV+S            +
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQGN---------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVED 785
           + +   LK +  N          V  + E+ E+         +K ++ +  + L+  ++D
Sbjct: 772 QEIVR-LKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 786 LSCHKIADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIM 826
                 A V+                 + ++ ++++    K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|194863135|ref|XP_001970293.1| GG23450 [Drosophila erecta]
 gi|190662160|gb|EDV59352.1| GG23450 [Drosophila erecta]
          Length = 966

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/973 (31%), Positives = 472/973 (48%), Gaps = 89/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   LLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           K   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 KRLALPKDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGPDDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q 
Sbjct: 421 VDLTQLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQL 472

Query: 458 IGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +   +   K     V  ++         +S + A+  + + V E  SGQK  +V D
Sbjct: 473 QEQGVPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLD 532

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           +T FYAE+GGQ+ D G    + D     + D      G  +H  IVE G L+    L L 
Sbjct: 533 KTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGIVE-GTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTDQKGSLVVPEKLRFDFNSKAAMTIEQVAK 651

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
            E    +++ +N+P+  +      A    G  ++    Y D VRV+S            +
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDDLEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKV---------SQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNVED 785
           + +   LK             + V  + E+ E+         +K ++ +  + L+  ++D
Sbjct: 772 QEIVR-LKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 786 LSCHKIADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIM 826
                 A V+                 + ++ ++++    K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|149699352|ref|XP_001501062.1| PREDICTED: similar to LOC510933 protein [Equus caballus]
          Length = 968

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/971 (32%), Positives = 481/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYAGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+ + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGESKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +           +     + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYN--YYSDSSGSYVFESAVATVMALRRDKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I    PV T+  +   A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL+     +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLSVMEGKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|26336489|dbj|BAC31927.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/971 (32%), Positives = 483/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K + +         +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYQ--SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS +TPD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVTPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 CGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL 770

Query: 742 LKSLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL++    +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|68536115|ref|YP_250820.1| alanyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|83305843|sp|Q4JVF5|SYA_CORJK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68263714|emb|CAI37202.1| alaS [Corynebacterium jeikeium K411]
          Length = 887

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/921 (35%), Positives = 480/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F+E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTNPVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TV+ +D+EA ++W K  G+   KI R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGLGLDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFI---LPKMSIDTGM 228
           I++D+G    G   G   +  RYIEIWNLVFM+ E+     K    I   LPK +IDTG+
Sbjct: 176 IYYDRGPEH-GQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +++VTG KY  +  N V  RVI DH R+   L+
Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLMLM 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   +   +  +   M  +YPE+ +    
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F KTL+ G  + D       +  ++ + GDVAF L+DTHG P+D+ Q++
Sbjct: 355 IRAVALAEEKSFLKTLESGSQMFDNWAHEAKERGEDTVPGDVAFSLHDTHGFPIDLTQEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                L  +DI  F++ + EQ++RA+A +     G  ++  +        T F GY+ L 
Sbjct: 415 AAEADLK-VDIDGFHELMAEQKARAKADNNAKKLGHVDQTIYRPFVDNHPTVFTGYENLA 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  I++ G +VE A  G   +V+ D+TPFYAEA
Sbjct: 474 D-----------------------EASVLGIIRDGALVETAPEGAAAQVILDRTPFYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G         ++ DVQK  + ++VHH  V  G L     +  T+D   R Q  
Sbjct: 511 GGQMADRGEMTSTSGAARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS THL+H AL  +LG    Q GS   P  LRFD  + + +T  +L  IE+  N  + 
Sbjct: 571 QAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTEHQLNQIEEIANGAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGG HV  + +
Sbjct: 631 SDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +  + ++ ESS+ +G+RRIEA TG  +   L  +   +  LA+ LK     +  R++ + 
Sbjct: 687 VGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVSGLATSLKTPSEELPDRIDALT 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMS-HIISEVDSKELKSVMDALQK 818
            + +  +    + + Q     +         I +V  ++  +   V + +L+++    + 
Sbjct: 747 AKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAEQLPEGVAAGDLRTLAMDAKN 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ S   +++   +  EK   V       +     A +L +   + +  G GGG+P MAQ
Sbjct: 807 RLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKTFGEKVA-GRGGGKPAMAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G +       I  V S L+
Sbjct: 866 GSGSDAAGISAGIEAVKSALR 886


>gi|145295754|ref|YP_001138575.1| alanyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|205830038|sp|A4QEK7|SYA_CORGB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|140845674|dbj|BAF54673.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 888

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/921 (35%), Positives = 494/921 (53%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F   F   GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+K  G+ A++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+GE   G   G   +  RY+EIWNLVFM+ E+       N +    LPK +IDTGM
Sbjct: 176 IYYDRGEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFEILGDLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +E +TG KY  +N   +  RVI DH R+   LI
Sbjct: 235 GVERVACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL  G  L +   +         + G  AF L+DT+G P+D+  ++
Sbjct: 355 IMRVAVTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  F+  + EQRSRA+A S     G T+   +        T F G++ L 
Sbjct: 415 AAEAGLE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELD 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+
Sbjct: 474 S-----------------------QSKVLGLLSDGAKISEATEGQEVEVILDQSPLYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     L + DVQK  + ++VH A+V  G L     +V ++D Q R    
Sbjct: 511 GGQLGDRGQILLGDTVLDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ +T A+++ I+   N+ + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+ + +
Sbjct: 631 TDWAVNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESSI +G+RRIEA +G  + ++L  +    + LAS LK     +  RV ++ 
Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLV 746

Query: 765 EEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISE-VDSKELKSVMDALQK 818
           ++ +  +       +++L     DL  +  +I  V  +   + +  ++ +L+++   L+ 
Sbjct: 747 DKLKAAEKEIEALHRQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKD 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           K+    G++++   +  K   V+      +    ++ +L +L    +  G GGG+  +AQ
Sbjct: 807 KLGDREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G N    + A   V + ++
Sbjct: 866 GSGANIAGLESAFGAVRAEIE 886


>gi|313124260|ref|YP_004034519.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280823|gb|ADQ61542.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|325685733|gb|EGD27811.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 877

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/916 (36%), Positives = 490/916 (53%), Gaps = 66/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DL
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+
Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++  G KY  N  +  + ++I DH+R+ SF I DG 
Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDTSFKIIADHIRAISFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I + 
Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIAGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +    +
Sbjct: 356 IKNEEDRFGVTLEAGLTLLDDLIDKAEKSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +E Q+ RAR     L S  ++                          
Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +   K+  +           S +  I+   ++V++A  G+K  ++FD+TPFYAE GGQ+
Sbjct: 450 -ETLMKIKDKSVFEYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGGQV 507

Query: 529 GDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  ++ DVQ       +H   V    L    +  L ID   R  L  +
Sbjct: 508 ADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVI-LPLVKGQTYKLKIDRARREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I ++
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWES 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T   + E     GA AL   KY D+VRVV +        S   CGGTH  +T +I 
Sbjct: 627 IQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K     ++  ++  + E
Sbjct: 682 VFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E R  +  +A  K Q+N             + D+  ++ I       +L+ + D  + + 
Sbjct: 742 ELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEG 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   S++K   ++ +  + L     A DL +  A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFL 896
                  AI    S L
Sbjct: 861 KPEGLQDAIDAAVSQL 876


>gi|323344880|ref|ZP_08085104.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323094150|gb|EFZ36727.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 873

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/919 (35%), Positives = 505/919 (54%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKQPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   L
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVEVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+T+++         D+EA + W K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 DPKDLYVTIFEGSPEENIPRDDEAARYWAK--HLPTDHIIEGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D +       +PG    +++  + IEIWN+VFMQF ++      +LP   IDTGM
Sbjct: 179 TEIHVDSRTPEEKAKVPGRELVNKDNPQVIEIWNVVFMQFNRKADGSLELLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+  +LQ K +NYD D+F+ +I+   +++G KY  +  ++   RV+ DHLR+ +F I
Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIREISRLSGKKYGEHEDIDVAMRVVADHLRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ Y+   L   E  M  LLP L  EMG+AYPEL   + 
Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYSYTFLDQKEAFMYKLLPVLVREMGAAYPELSAQQE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E++ F +TL++G+ LL+  ++ L       L+G  AF+L+DT+G PLD+ + 
Sbjct: 359 LIARVMKEEEDSFLRTLEKGINLLNAAMNELKAAGKNCLDGAQAFRLFDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G   +D   F++ +E+Q++RAR  ++          W  L++  G  QF+GYD  
Sbjct: 419 ICRENGFT-VDEKQFDKEMEKQKARARNAAV-----VENGDWVVLRK--GEQQFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +K                                E+V D TPFY E
Sbjct: 471 EHECHILRYRQVTQKKNTF----------------------------FELVLDYTPFYGE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G  +    +++I D  K+     +H  IV++         +  +D + R   
Sbjct: 503 MGGQVGDQGVLVNGNEKVEIIDT-KRENNQSIH--IVKQLPKEPSADFMACVDTEKRDAS 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL +AL  +LG HV Q GS ++PD LRFD +H + +T  E++ +E  VN++I
Sbjct: 560 AANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERMVNEMI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q+ P+        E+A   GA AL G KY D+VRVV          S   CGG H  ST
Sbjct: 620 RQDFPLDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFGP------SCEFCGGIHAKST 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I +  I+SESS+ AGIRR EA+TG+         ++ LK + +    +  ++ G + +
Sbjct: 674 GRIGMFKIISESSVAAGIRRFEAMTGKMCEETYYALEDTLKDIRTLFN-NAKDLRGVIGK 732

Query: 763 IWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             EE+    + ++  HA+   +   E +    I +   +   I  ++    K ++  +++
Sbjct: 733 YIEEHDLMKKDIEKFHAQTVERTKDEVIKRATIVNGTTVVRSILPIEPSAAKDLVFKIRE 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I   ++ ++G +   K  + +++++D++     NA  + R +AK++ GG GGG+PH AQ
Sbjct: 793 AIPQNLVCVIGSTVGDKPLLSVMLSDDMVKEHHLNAGQMIREAAKLIQGG-GGGQPHYAQ 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + A+  V + 
Sbjct: 852 AGGKNIDGINAAVDKVIAL 870


>gi|209862801|ref|NP_001093987.1| alanyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|261260086|sp|P50475|SYAC_RAT RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|149038198|gb|EDL92558.1| alanyl-tRNA synthetase [Rattus norvegicus]
          Length = 968

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/971 (32%), Positives = 478/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ +F++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINYFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEAKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCQTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +           +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYH--SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G LR    + L
Sbjct: 534 FYAEQGGQIFDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLRVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGD-ADQKGSLVAPDRLRFDFTAKGAMSTEQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+ VN +I    PV T       A A  G  A+    Y D VRVVS+           
Sbjct: 651 KTEEIVNGMIEAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL 770

Query: 742 LKSLASFL------KVSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL++             +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLSAMEVKVKAQSAPNKDVQKEIADLGEVLATAVIPQWQKDEQRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|254821812|ref|ZP_05226813.1| alanyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 904

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/933 (34%), Positives = 483/933 (51%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F G   P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPEYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK RAI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRRAIELAWTLLTNSVEQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LWK+I+GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWATVYFDDDEAVQLWKEIAGLPDERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G      G P ++E+  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEFGVEGGPIANED--RYIEIWNLVFMQNERGEGTGKEDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ-------VTGMKYEGNNIVNHRVIVDHLRSS 282
           +ER+A +LQ   N Y+ DL + +I A          ++G +   ++ V +RVI DH R++
Sbjct: 234 VERVAFILQGVHNVYETDLLRPVIDAVAARAPRGYGLSGPEGNHDDDVRYRVIADHSRTA 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           + LI DG+ P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+ 
Sbjct: 294 AILIGDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVA 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
               I     +E+  F +TL  G  L D V   +     + ++G  AF L+DT+G P+++
Sbjct: 354 DFDRIRRIAVAEETAFNRTLAAGSKLFDEVAGTTKASGAKAISGSDAFTLHDTYGFPIEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D + F + + EQR RA+A +        +   +      G T+F G+
Sbjct: 414 TLEMASEAGL-QVDEVGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGPTEFTGF 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG----QKVEVVFD 516
           D L                          + +  I   G+ V     G     +VE+V D
Sbjct: 473 DEL-----------------------TSEAKLLGIFVDGKRVPVVTHGTEGVDRVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAEAGGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++
Sbjct: 510 RTPLYAEAGGQIADEGTISGTGASGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D Q RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD      ++  + 
Sbjct: 570 AAVDPQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDEQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE+  N  +  +  V T     E A A GA A+ G +Y D VRVV +    GG  S  
Sbjct: 630 TQIEEVTNQAVQADFEVHTFTEQLEKAKAMGAIAMFGERYPDEVRVVEI----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV ++ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLESFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + E  +  +    +      K           +I +V  ++  ++  + +
Sbjct: 746 SDEVPARVANLVERLKAAEKELERARLAGAKAAATDAAAGAERIGNVRVVAQRMTGGMTA 805

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVL 863
            +L+S++  ++ K+     ++  I+  +  SV   V  +         A DL +  A  +
Sbjct: 806 GDLRSLVGDIRGKLGGDPAVVALIADGEGGSVPYAVAANPAAQDLGLRANDLVKKLAAAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+  +AQ  G +    D A+A + S +
Sbjct: 866 -DGRGGGKADLAQGSGKDPTGIDAALAAIRSEI 897


>gi|260578810|ref|ZP_05846717.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603108|gb|EEW16378.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 887

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/921 (35%), Positives = 480/921 (52%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F+E F K GH  +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D+D VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTDPVE 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                LD  RL++TV+ +D+EA ++W K  G+   KI R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGLGLDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFI---LPKMSIDTGM 228
           I++D+G    G   G   +  RYIEIWNLVFM+ E+     K    I   LPK +IDTG+
Sbjct: 176 IYYDRGPEH-GQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +++VTG KY  +  N V  RVI DH R+   L+
Sbjct: 235 GIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLMLM 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   +   +  +   M  +YPE+ +    
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E++ F KTL+ G  + D     +    ++ + GDVAF L+DTHG P+D+ Q++
Sbjct: 355 IRAVALAEEKSFLKTLESGSQMFDNWAHGAKERGEDTVPGDVAFSLHDTHGFPIDLTQEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  ++I  F+  + EQ++RA+A +     G  ++  +        T F GY+ L 
Sbjct: 415 AAEAGLK-VEIDGFHDLMAEQKARAKADNNAKKLGHVDQTIYRPFVDNQPTVFTGYENLA 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  I++ G +VE A  G  V+V+ D+TPFYAEA
Sbjct: 474 D-----------------------EGSVLGIIRDGALVETASEGAAVQVILDRTPFYAEA 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G         ++ DVQK  + ++VHH  V  G L     +  T+D   R Q  
Sbjct: 511 GGQMADRGEMTTTSGSARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS THL+H AL  +LG    Q GS   P  LRFD  + + +T  +L  IE+  N  + 
Sbjct: 571 QAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTENQLNQIEEIANGAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGG HV  + +
Sbjct: 631 SDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +  + ++ ESS+ +G+RRIEA TG  +   L  +   +  LA+ LK     +  R++ + 
Sbjct: 687 VGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVAGLATSLKTPSEELPERIDALT 746

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
            + +  +    + + Q     +         I +V  ++  +   V + +L+++    + 
Sbjct: 747 AKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAERLPEGVAAGDLRTLAMDAKN 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ S   +++   +  EK   V       +     A +L +   + +  G GGG+P MAQ
Sbjct: 807 RLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKAFGEKVS-GRGGGKPAMAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G +       I  V S L+
Sbjct: 866 GSGSDAAGIPAGIEAVKSALR 886


>gi|218281062|ref|ZP_03487629.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989]
 gi|218217684|gb|EEC91222.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989]
          Length = 876

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/915 (35%), Positives = 488/915 (53%), Gaps = 59/915 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  FL++F+  GH + P +SLIP NDPTL++ N+G+   K  F G EKP  
Sbjct: 1   MKQLTGNQIRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPAS 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +   QK +R     ND++NVGRT RHHTFFEMLGNFS G YFK+ AIQ AW+ LT  +
Sbjct: 61  NRIANAQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKDEAIQFAWEFLTSEE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D+ RLY++VY +D  A+++W  I G+    I++  T+DNFW + + GP GP SEIF
Sbjct: 117 WMGIDKDRLYVSVYTDDARAYEVWTTICGVDPSHILK--TDDNFWEIGK-GPGGPDSEIF 173

Query: 177 FDQGECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+GE          L     E +RY+E+WN+VF Q++      +++   LP+ +IDTGM
Sbjct: 174 FDRGEKYDPEGLGEKLFFDEMENDRYVEVWNVVFSQYDCDPSIDRKDYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+  ++Q+   N+D DLF  +I+A+E +    YEG   + +RVI DH+R+ +F ++D
Sbjct: 234 GLERLVALVQDGETNFDTDLFLPIIRATEAMAKHPYEGEYKMAYRVIADHVRTVTFALSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGYVLRR++RRA+ Y   LG  EP +  L+P +   M   YP L +     +
Sbjct: 294 GANFSNSGRGYVLRRVLRRAVRYGLKLGLDEPFLYKLVPVVADLMEDFYPYLQEHVEFNQ 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KTL  G  LLD  +S   KD  L+G+V FKLYDT+G P ++ Q+I    
Sbjct: 354 KLIKVEEETFKKTLKVGQALLDDEISKA-KDGKLSGEVVFKLYDTYGFPFELTQEIAEES 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +    F+  + +Q+ RAR       S  ++     L      ++FIGYD L     
Sbjct: 413 GIT-VSHEDFDAQMNKQKERARNARNVKDSFASQN--EELMNFNEPSEFIGYDHLTCDG- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                 I+     +G++V+      +  ++ D+T FYAE+GGQ+
Sbjct: 469 ---------------------KIIALFNAEGKMVDSLE--DEGMIILDKTCFYAESGGQV 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G    DG+ +++ DVQK      +H   +  G+L   MSL   ++ ++R   + NHS
Sbjct: 506 ADKGTFSADGVDVEVLDVQKTRNKQHIHTVKINGGVLEKGMSLHGEVNVKDRLATTANHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  AL  +LG H+ Q GS   P+ LRFD  H + +T+ +L  +E  VN+ I+   P
Sbjct: 566 CTHLLQSALVKVLGDHIHQAGSYNCPEYLRFDFNHYEKVTAEQLAEVERIVNEYISAAYP 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V   IM  E+A  SGA AL   KY D VRVV++     G  S   C G HV +T +I L 
Sbjct: 626 VTKEIMPIEEAKKSGATALFDEKYGDTVRVVTM-----GDVSKEFCAGCHVENTAQIGLC 680

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            I+SE SI +  RRI A T   A      +   L+++A   K     N+  +VE  ++  
Sbjct: 681 KIISEESIGSDSRRITAKTKFAAYQDFASEHAMLENIADSAKQKGIKNIDTKVEAAYKTM 740

Query: 768 RKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             +Q      K     L+             VN +   +S +D+  LK ++  L+     
Sbjct: 741 HDMQKEIDNLKNQIFTLKSKEWATEAKDFGKVNVLIKSVSGMDAGALKDIVSNLKANDDK 800

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            ++  V  + EK   V     E +    +A  L + +A++   G GGG+P MAQ+GG + 
Sbjct: 801 MVVFFVNTNGEKVVFVSGAGKEAVKAGVHAGQLVKKAAQICS-GNGGGKPDMAQAGGKDA 859

Query: 883 NKADQAIAGVASFLK 897
           +K D+AI  +   LK
Sbjct: 860 SKVDEAINAITEELK 874


>gi|254366760|ref|ZP_04982803.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134152271|gb|EBA44316.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 904

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/933 (35%), Positives = 491/933 (52%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFGG F+ R I+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGGLFQTRVIELAWALLTNSLAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  SE+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ+  N Y+ DL + +I    +V    Y+     + V +R+I DH R+++ LI
Sbjct: 234 VERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFER 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++
Sbjct: 354 ISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR
Sbjct: 414 AAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFD 516
                                    + +  I   G+ V          A  GQ+VE+V D
Sbjct: 473 S-----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLD 509

Query: 517 QTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++
Sbjct: 510 RTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  + 
Sbjct: 570 AAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  
Sbjct: 630 TQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + E  R  +    + ++               +I +V  ++  +S  + +
Sbjct: 746 SEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTA 805

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVL 863
            +L+S++  ++ K+ S   ++  I++ +  +V   V  +         A DL +  A  +
Sbjct: 806 ADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+  +AQ  G N    D A+  V S +
Sbjct: 866 E-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 897


>gi|258648967|ref|ZP_05736436.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260850577|gb|EEX70446.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 874

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/921 (36%), Positives = 489/921 (53%), Gaps = 77/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F  FF+  GH ++PS+ ++  +DPTLMFTN+GM  FK+I  G  +P  +  
Sbjct: 1   MTANEIRESFKRFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGHREPKSRRQ 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE AI+ A++ L     +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEEAIEFAYEYLVGVLKID 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY+TV++         D+EA  +W +      D II    +DNFW M ETGPCGPCS
Sbjct: 121 PANLYVTVFEGSPDEGLSRDDEAAAIWGR--HFPEDHIINGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +++  + IEIWNLVFMQ+ ++       LP+  IDTGMG
Sbjct: 179 EIHIDIRSAEEKAAVAGRELINKDHPQVIEIWNLVFMQYNRKADGTLDALPQRVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287
            ER+  V+Q K +NYD D+F+ ++    +++G +Y       +  RVI DHLR+ SF IA
Sbjct: 239 FERLCMVMQGKQSNYDTDVFRPILNKIAELSGRRYGESTETDIAMRVIADHLRAISFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L  EMG AYPEL   + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYRLVPTLVEEMGEAYPELAAQRDL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL  G+ LL+GV+         ++ G+ AF L+DT+G PLD+ + I
Sbjct: 359 ITRVMKEEEDSFLRTLATGISLLEGVMKETKDGGSSVVKGEKAFTLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   FN  ++ Q+ RAR+      +      W  L E  G + F+G+D LR
Sbjct: 419 CAENGLK-VDEDGFNVEMQRQKERARSA-----ASVETGDWVILSE--GESHFVGWDTLR 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  +   RKV  +K                                E+V D TPFYAE 
Sbjct: 471 QACHILRYRKVQQKKQTY----------------------------YELVIDTTPFYAEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD+G        ++I D  K+   + +H  + +R         +  +D   RR   
Sbjct: 503 GGQVGDSGVLRSANETVEIFDT-KQENNLSIH--LTKRLPENPAAEFMAEVDEAARRSCE 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLL  AL  +LG+HV Q GS +TP  LRFD++H + +T  EL+ +E  +N  I 
Sbjct: 560 ANHSATHLLDQALREVLGAHVEQKGSLVTPTYLRFDLSHYQKVTPEELRQVERIINRRIR 619

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +++P+     +  E+A   GA AL G KY DRVRVV  +       S   CGG HV STG
Sbjct: 620 EDIPLQDHRDVPIEEAKRMGAIALFGEKYGDRVRVVQFDK------SVEFCGGCHVRSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L  IVSESS+ AGIRRIEA+T + A      Q + L  L +    +  ++   V   
Sbjct: 674 RIGLFRIVSESSVAAGIRRIEAVTAEAAEEMCYRQHDTLNDLRALFN-NVKDISVAVHNA 732

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHII-SEVDSKELKSVMDAL 816
            EE  +L+    K  +QL V++L            D+  + +++  E     +K +   L
Sbjct: 733 IEENDELKKEVEKF-MQLRVKELGKELMKIAENRGDIKLLKYVVKDEWAPDLIKDLAFQL 791

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM 874
             ++   +  ++G  +  K  + +++++ L+   + NA  L R +AK++ GG GGG PH 
Sbjct: 792 SAQLPENLFCVIGSHQGGKPLLTVMISKQLVESKQLNAGQLVREAAKLIKGG-GGGAPHF 850

Query: 875 AQSGGPNGNKADQAIAGVASF 895
           A +GG + N    A+  V   
Sbjct: 851 ATAGGKDLNGLTAAVDKVVEL 871


>gi|195473021|ref|XP_002088795.1| GE11031 [Drosophila yakuba]
 gi|194174896|gb|EDW88507.1| GE11031 [Drosophila yakuba]
          Length = 966

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/973 (31%), Positives = 472/973 (48%), Gaps = 89/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   LLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 QRLSLPKDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q 
Sbjct: 421 VDLTQLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQL 472

Query: 458 IGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +   +   K     V  ++         +S + A+  + + V E  SGQK  +V D
Sbjct: 473 QEQGVPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLD 532

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           +T FYAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L 
Sbjct: 533 KTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
            E    +++ +N+P+  +      A    G  ++    Y D VRV+S            +
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKV---------SQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNVED 785
           + +   LK             + V  + E+ E+         +K ++ +  + L+  ++D
Sbjct: 772 QEIIR-LKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 786 LSCHKIADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIM 826
                 A V+                 + ++ ++++    K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|189217804|ref|NP_001121342.1| alanyl-tRNA synthetase [Xenopus laevis]
 gi|171846704|gb|AAI61712.1| LOC100158432 protein [Xenopus laevis]
          Length = 968

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/970 (34%), Positives = 487/970 (50%), Gaps = 92/970 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
              S IR  F++FF+ NGH  + SS+ +P +DPTL+F N+GM  FK IF     P +   
Sbjct: 5   MTASEIRQKFIDFFKDNGHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMA 64

Query: 60  ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTK
Sbjct: 65  KLTRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTK 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           EF +D  RLY+T +  +E        E  ++W  + GL+  +I+  +  DNFW M +TGP
Sbjct: 125 EFGIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLAESRILPGSMKDNFWEMGDTGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK SIDTGM
Sbjct: 184 CGPCSEIHFDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH 
Sbjct: 243 GLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGDEDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  ++     L+  +   +G+A+P
Sbjct: 303 RTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFSTLVDVVVQSLGNAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +   ++++ +  E+ +F KTL+RG  +LD  +  LG+ +++ GD A+ LYDT+G P+
Sbjct: 363 ELKKDPDMVKDIINDEETQFLKTLNRGRRILDRKIQSLGEHKVIPGDTAWLLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   I   RGL  +D+ SF    EE+R  A+  S G G+G  + +   +   Y   +  
Sbjct: 423 DLTSLIAEERGLT-LDMESF----EEERKAAQLKSQGKGAGDEDLLMLDI---YAIEELR 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
              L       K           +   + + + VKAI ++   VEEA +GQ+  +V D+T
Sbjct: 475 SRGLEPTDDLPKYT--YTSNAEGVYEFDNLLATVKAIRREKMFVEEASTGQECGLVLDKT 532

Query: 519 PFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            FYAE GGQ  D G  +       D     + + Q    G +V H     G L+    + 
Sbjct: 533 CFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQ--VRGGYVLHVGTLYGNLKVGDQVH 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +T+ E+
Sbjct: 591 LYIDEPKRRPIMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMTTQEI 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY-------- 683
           +  E+  NDII +N  V         A A  G  A+    Y D VRVVS+          
Sbjct: 650 RKTEEIANDIIKENKVVYALDCPLATAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLLAD 709

Query: 684 ---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                G V S   CGGTH+ ++G      IV+E +I  GIRRI A+TG  A+  L  QD 
Sbjct: 710 PSSPAGSVTSVEFCGGTHLKNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQDA 769

Query: 741 KLKSLASFLK------VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDL 786
              SL+   K          +V   + ++ E        +++K  L    + L+  ++DL
Sbjct: 770 IKVSLSDLEKKVKKQTDPNKDVQKEIADLSENLATVVIAQWQKDVLREQLKTLKKTMDDL 829

Query: 787 SCHKIADVN-----FMSHIISE--------------VDSKELKSVMDALQKKIQSGIIML 827
                ADV          +I E                +K L   +  L+ +      M+
Sbjct: 830 DRASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPQTAAMI 889

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +  +  K + L  V ++  D+   A +  +  ++ L  G GGG+   AQ+ G N    
Sbjct: 890 FSVDSDAGKITCLCQVPKETADKGLKANEWVQQVSE-LMDGKGGGKDTSAQATGKNVGCL 948

Query: 886 DQAIAGVASF 895
            Q +     F
Sbjct: 949 SQVLKLAEDF 958


>gi|154493963|ref|ZP_02033283.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC
           43184]
 gi|154086223|gb|EDN85268.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC
           43184]
          Length = 875

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/920 (37%), Positives = 491/920 (53%), Gaps = 76/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L +   L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVEVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D+EA   W+K   L    II    +DNFW M +TGPCGPC
Sbjct: 121 NPDRLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKAHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRPEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPARVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    V  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTAYGKDKQQDVAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +++G  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKNVISGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   +I  FN  +++Q+ RAR       +      W  LKE  G   F+GYDL 
Sbjct: 419 ILRENGMEA-NIDEFNVEMQKQKDRARNA-----AAIETGDWVVLKE--GGCNFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECDAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D   + + D  K+   + VH  +V +       +    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDETVDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINEKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V++ I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+     M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGN------SIELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L +V ESSI AG+RRIEA+T + A ++     + L+ L +    +  N+   +++
Sbjct: 674 GMIGSLRVVGESSIAAGVRRIEAVTAEAAENYTFMLQDSLRELRAMFN-NVPNLSQTIKK 732

Query: 763 IWEEYRKLQLI---HAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817
             EE  +L+     + K K+QL  ++L    +    V  ++    E     +K +   ++
Sbjct: 733 AIEENAELKKQVSDYVKEKVQLLKKELIAKAVERNGVKVIAFR-GEASVDAIKDLAFQIK 791

Query: 818 KK--IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM 874
            +   +  +  + GI   +K +++++++E L+    NA  L + +AK++ GG GGG+PH 
Sbjct: 792 GESNTEEKVFFVAGIKDGEKCALMVMLSEPLVAEGLNAGKLVKEAAKLIQGG-GGGQPHF 850

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           A +GG N     +AI  +  
Sbjct: 851 ATAGGKNVAGLGEAIEHILD 870


>gi|19552844|ref|NP_600846.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|62390515|ref|YP_225917.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|24418687|sp|Q8NQ22|SYA_CORGL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21324401|dbj|BAB99025.1| Alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325852|emb|CAF21641.1| ALANYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 888

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/921 (35%), Positives = 493/921 (53%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F   F   GH+ +PS+SLI  +DP L+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY +D+EA ++W+K  G+ +++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 DGGFGLDPERLWVTVYLDDDEAAEIWEKKIGVPSERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+GE   G   G   +  RY+EIWNLVFM+ E+       N      LPK +IDTGM
Sbjct: 176 IYYDRGEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFDILGDLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G+ER+A +LQ+  N Y+ DL + +I  +E +TG KY  +N   +  RVI DH R+   LI
Sbjct: 235 GVERVACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGY+LRR++RR +  ARLLG T   M   +  +   M  +YPE+   +  
Sbjct: 295 LDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL  G  L +   +         + G  AF L+DT+G P+D+  ++
Sbjct: 355 IMRVAVTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  F+  + EQRSRA+A S     G T+   +        T F G++ L 
Sbjct: 415 AAEAGLE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELD 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V  ++  G  + EA  GQ+VEV+ DQ+P YAE+
Sbjct: 474 S-----------------------QSKVLGLLSDGAKISEATEGQEVEVILDQSPLYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQLGD G  +     L + DVQK  + ++VH A+V  G L     +V ++D Q R    
Sbjct: 511 GGQLGDRGQILLGDTVLDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ +T A+++ I+   N+ + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTALQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y   VRVV +    GG  S  LCGGTHV+ + +
Sbjct: 631 TDWAVNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESSI +G+RRIEA +G  + ++L  +    + LAS LK     +  RV ++ 
Sbjct: 687 IGPVALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLV 746

Query: 765 EEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISE-VDSKELKSVMDALQK 818
           ++ +  +       +++L     DL  +  +I  V  +   + +  ++ +L+++   L+ 
Sbjct: 747 DKLKAAEKEIEALHRQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKD 806

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           K+    G++++   +  K   V+      +    ++ +L +L    +  G GGG+  +AQ
Sbjct: 807 KLGDREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLK 897
             G N    + A   V + ++
Sbjct: 866 GSGANIAGLESAFGAVRAEIE 886


>gi|195339200|ref|XP_002036208.1| GM12994 [Drosophila sechellia]
 gi|194130088|gb|EDW52131.1| GM12994 [Drosophila sechellia]
          Length = 966

 Score =  806 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/973 (31%), Positives = 473/973 (48%), Gaps = 89/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +++FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   LLTAKEVRNAYMDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 QRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q 
Sbjct: 421 VDLTQLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQL 472

Query: 458 IGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +   +   K     V  ++         SS + A+  + + V E  SGQK  +V D
Sbjct: 473 QEQGVPPTNDTFKYKYEAVSDERDSAYNYGVCSSKIVALRFENQFVNEITSGQKAGIVLD 532

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           +T FYAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L 
Sbjct: 533 KTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
            E    +++ +N+P+  +      A    G  ++    Y D VRV+S            +
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALQKSETFE 771

Query: 743 KSLASFLKVSQGN---------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVED 785
           + +   LK +  N          V  + E+ E+         +K ++ +  + L+  ++D
Sbjct: 772 QEIVR-LKATIENDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 786 LSCHKIADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIM 826
                 A V+                 + ++ ++++    K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|328462753|gb|EGF34642.1| alanyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463]
          Length = 879

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 497/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF   LD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL ID + R  L  +
Sbjct: 508 ADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLI-LPMEKGKEYVLKIDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I 
Sbjct: 627 IDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQI-----GDFSSEFCGGTHCSNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ +  
Sbjct: 682 IFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        Q+N            +  D+  ++ +       +L+ + D  +   
Sbjct: 742 DLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
                + AI  V   + K
Sbjct: 861 RPEGLNDAIKAVIEEISK 878


>gi|291513841|emb|CBK63051.1| alanyl-tRNA synthetase [Alistipes shahii WAL 8301]
          Length = 873

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/928 (35%), Positives = 488/928 (52%), Gaps = 93/928 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++PS+ ++   DPTLMFTN+GM  FK+IF G     Y   
Sbjct: 1   MESNKIRQAFLDFFESKGHAIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+S+G YFK+ AI+ AW+LL   + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLHGVYGLP 120

Query: 122 QRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y TV++  EE        A+  W +   L AD IIR   +DNFW M ETGPCGPCS
Sbjct: 121 AERMYATVFEGSEEDGVPFDQEAYDYWLRY--LPADHIIRGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI FD + E      PG    +    + IEIWNLVFMQF ++       LP  ++DTGMG
Sbjct: 179 EIHFDLRDEAEIAAKPGREMVNASHPQVIEIWNLVFMQFNRKANGSLEELPARNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  +LQ K +NYD D+F+  I    +++G KY  +    V  RVI DHLR+ +F IA
Sbjct: 239 FERLCMILQGKKSNYDTDVFQPTIGRIAEMSGKKYGEDRKADVAMRVIADHLRAIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG+TEP +  L+P L  +MG  +PEL   + L
Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTLCRLVPGLVGQMGGQFPELKAQQGL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +  E+  F +TL  G+ LLDGV+S       E+++G  AF+LYDT G P+D+ + I
Sbjct: 359 IEKVIEEEESSFLRTLATGINLLDGVISRTKGEGKELISGKDAFELYDTFGFPIDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +G+ G+D+ +F + L+ Q+ R+R       +      W  L      + F GYD L 
Sbjct: 419 AREQGV-GVDLAAFEKELQAQKERSRNA-----AAVDTDDWVELFP-IRESVFTGYDTLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +                                 ++VFD+TPFY  +
Sbjct: 472 EKVRIARYRRVTSKGKT----------------------------SYQLVFDRTPFYGNS 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G       R+ +   +K+  G+ +H  IV +            +D + R+  +
Sbjct: 504 GGQVGDIGMIESANERIPVVATEKE-NGLIIH--IVNQLPENPAAEFTARVDPEKRQAAA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+H AL  +LG+HV Q GS +TP+ LRFD +H + +T  EL+ +E  VN  I 
Sbjct: 561 NNHTATHLMHEALRKVLGAHVEQKGSLVTPEILRFDFSHFQKVTPEELRKVEQLVNRAIR 620

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P V  R   +E+A   GA  L G KY D+VR+V          S  LCGGTH  +TG
Sbjct: 621 ANYPLVENREATKEEAEKCGAMMLFGEKYGDKVRMVRFGS------SVELCGGTHTGATG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I+SES+I AG+RRIEA+TG++A   L   ++ ++++A +L   Q  VV  V+++
Sbjct: 675 NIGFFKILSESAISAGVRRIEAVTGEQAEKVLYAAEDTMRNIAEYLNNPQ--VVQAVKKM 732

Query: 764 WEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKK 819
            E    L  ++   +R+      D       + + M    ++ D     +K +   L+++
Sbjct: 733 LESNETLSKEVESMRREQVAQWADKIAASTPERHGMQLFATQTDRRPDFVKDLAYNLRQR 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM---- 874
               ++ +VG   + K ++ +++ +++     NA  + R +AK+           M    
Sbjct: 793 SPR-LVFVVGSVWDGKPTLTVMLGDEITACGVNAGAVVREAAKL-----------MQGGG 840

Query: 875 ------AQSGGPNGNKADQAIAGVASFL 896
                 A +GG N +    AI      +
Sbjct: 841 GGQAFFATAGGKNPDGLQAAIDKAVELI 868


>gi|302866800|ref|YP_003835437.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302569659|gb|ADL45861.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 893

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/911 (36%), Positives = 496/911 (54%), Gaps = 72/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  FL  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MKTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL TK     
Sbjct: 61  TSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+ +W+  +G+ A++I+R    DNFWSM   GPCGPCSE++
Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQFE+              LP  +IDTGMGL
Sbjct: 176 YDRGPAY-GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----------GNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  K ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           +S  LI DG+ P+NEGRGYVLRRIMRRA+   RLLGY +  +  LLP     M  +YPEL
Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
            +    I +   +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKAALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QRSRA+A +    +G T+   + S+ +  G  +F
Sbjct: 415 DLTLEIAAEQGL-QVDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  L                          S V+A++  G  V  AV G  +E+V D 
Sbjct: 474 TGYTEL-----------------------SRESRVRALLSGGAAVSAAVEGDTIELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R+  +    ID 
Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L  +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+++  +L V   + ++E+A   GA AL G KY +RVRVV V     G ++  LCGGT
Sbjct: 631 QVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ + ++ L+ I+SE+S+ +G+RRIEA+ G  A   L  +   +  LA   +V    V 
Sbjct: 686 HVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + Q  L        +  DV  ++++         + ++++
Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAKDVRGVAYVGTEAPEGAAANDVRT 805

Query: 812 VMDALQKKIQSGIIMLVGIS--KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ +I +    ++ ++     KAS+++ V +    R  +A DL + +      G G
Sbjct: 806 LAQEIRGRIDAARPAVIAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS----GRG 861

Query: 869 GGRPHMAQSGG 879
           GG   +AQ GG
Sbjct: 862 GGSDDLAQGGG 872


>gi|205830052|sp|A1R709|SYA_ARTAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 892

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/927 (35%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+P Y  
Sbjct: 1   MKS-QEITKRWVDFFVNKGHTAVPSASLVSS-DPSLLFTVAGMVPFIPYLTAREEPPYSR 58

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT     
Sbjct: 59  ATSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDD 114

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L   RL++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI
Sbjct: 115 GGYGLPAERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           ++D+G    G   G   +  RYIEIWNLVFMQ++ +N + +        LP+ +IDTG+G
Sbjct: 175 YYDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           +ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+R
Sbjct: 234 MERLAMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIR 293

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +
Sbjct: 294 SALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVV 353

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLD 399
                 I     +E++ F +T+  G   L+  ++      + L+G  AF L+DT+G P+D
Sbjct: 354 ETDFARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPID 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    GL  +D   F   + EQR RA+A + G   G  +   +      G T F G
Sbjct: 414 LTLEMAEEAGL-QVDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L G                        + V+ IV  G  V  A +G ++E+V ++TP
Sbjct: 473 YDELEG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G + ++  +   +D + 
Sbjct: 510 FYAEAGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRER 569

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  
Sbjct: 570 RHAAEQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVS 629

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V T++M   +A A GA AL G  Y   VRVV ++    G  S  LCGGTHV
Sbjct: 630 NIAIRNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHV 685

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S+T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R
Sbjct: 686 SNTSLIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADR 745

Query: 760 VEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEV-DSKELKSVM 813
           +     + +  +       K +L     +L  +    A V  ++H   +V  + +L+++ 
Sbjct: 746 ISSTLNKLKATEKELDRLRKEQLAAAAANLVGTAKDAAGVRVVAHDAGQVGGADDLRNLA 805

Query: 814 DALQKKIQSGI--IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             L+ ++ S    + + G+S ++   ++            A  L RL+A +LGGGGG G+
Sbjct: 806 LDLRNRLGSEASTVAVAGVSNDRPVILIATNEAAREAGVKAGALVRLAAGILGGGGG-GK 864

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
             +AQ GG +  K  +A+  V   + K
Sbjct: 865 DDVAQGGGTDAGKVSEALTAVVDAIAK 891


>gi|108808831|ref|YP_652747.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|122382877|sp|Q1C420|SYA_YERPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108780744|gb|ABG14802.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua]
          Length = 738

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/744 (46%), Positives = 466/744 (62%), Gaps = 52/744 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SS+L+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PGS+ E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 SEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NY+IDLF+ LI A   VTG     +   + RVI DH+RS +FLI+DG++
Sbjct: 243 RIAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSK--SLRVIADHIRSCAFLISDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MG A  EL Q + ++E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  LS L  D  L+G+ AF+LYDT+G P+D+  D+   R L 
Sbjct: 361 KTEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F QA+E QR RAR  S G G+      + SL     A+QF GYD ++       
Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQ------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+ + GE V+E  +G++  VV ++TPFY E+GGQ+GD 
Sbjct: 466 ----------------QHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +TD QK  + I  H  I+  G LR   S+   +D   R ++ +NHSATH
Sbjct: 510 GELKNATATFSVTDTQKYGQAI-GHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL  +LG HV+Q GS +    LRFD +H + +   +++ +ED VN+ I +N+PV T
Sbjct: 569 LLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  + A   GA AL G KY+D+VRV+++     G  S+ LCGGTH S TG+I L  I+
Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIL 683

Query: 712 SESSI---RAGIRRIEAITGQRAR 732
           +ES        I R  AI G  A 
Sbjct: 684 TESGSNLPGCTILRNLAIAGFSAF 707


>gi|161506983|ref|YP_001576937.1| alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
 gi|205830127|sp|A8YTJ0|SYA_LACH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160347972|gb|ABX26646.1| Alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571]
          Length = 879

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 497/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RF  TLD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEKRFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL ID + R  L  +
Sbjct: 508 ADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLI-LPMEKGKEYVLKIDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I 
Sbjct: 627 IDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ +  
Sbjct: 682 IFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPDNIIDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        Q+N            +  D+  ++ +       +L+ + D  +   
Sbjct: 742 DLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A DL +  A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENDGKANMIISLGQKALDKGLKAGDLIKKVAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
                + AI  V   + K
Sbjct: 861 RPEGLNDAIKAVIEEISK 878


>gi|170016825|ref|YP_001727744.1| alanyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|205830134|sp|B1MXP8|SYA_LEUCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169803682|gb|ACA82300.1| Alanyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 894

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/927 (35%), Positives = 490/927 (52%), Gaps = 70/927 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPKNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEM+GNFS G YFK   I  AW+LLT  + + L
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTLFEMMGNFSVGDYFKAEVIPWAWELLTSPEWYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  LY+TVY +D+EA K+W + + L    I  +   DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKDLLYVTVYPKDQEAKKIWLEKTDLPEGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
                      E     E ERY+EIWN+VF QF              LP  +IDTGMGLE
Sbjct: 178 PAFQNLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-----GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           R+ +V Q    N+D DLF  +I+A+E+++         +  +  + +VI DH+R+ +F I
Sbjct: 238 RLVSVFQNGRTNFDTDLFLPIIRATEKMSPDYTYDATKDSESNTSFKVIADHIRAITFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LPANEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+      
Sbjct: 298 GDGALPANEGRGYVIRRLLRRAVLHGQKLGIQGEFLTKLVPIVAEIMQSYYPEIADNTEK 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I++T+ +E++RF  TL  GL LL+ V++       ++++G  AFKL DT+G PL++ Q+ 
Sbjct: 358 IQKTIAAEEKRFNATLTGGLSLLNDVIAKAKASGQQVISGADAFKLSDTYGFPLELTQEQ 417

Query: 405 LCARGLAGIDIISFNQAL-EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D++ FN AL  ++     A S     G    +   LK     + ++G+   
Sbjct: 418 AADEGLT-VDVVGFNDALQAQRTRARAARSNDKSMGVQNAVLTDLK---VPSDYVGWSET 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS----GQKVEVVFDQTP 519
             S                      ++IV  I    + V+  ++    G  V++VFD+TP
Sbjct: 474 EVSN---------------------AAIVAIIGHDNQGVDALLANAEPGDSVQLVFDKTP 512

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  +     +  ++TD Q    G  VH   V     +    + L ++ 
Sbjct: 513 FYAEMGGQVADQGEVLNKQGEVVARVTDTQSAPNGQHVHTVEVVTS-FKLGDQVALKVNL 571

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
                +S NH+ATHLL   L  ++G  V Q GS + P+ LRFD TH  P++   L+ IE 
Sbjct: 572 ARHVAISKNHTATHLLDQTLRNVIGGDVHQAGSLVEPEYLRFDFTHEGPVSEQNLEKIET 631

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN +IA NLP+     + E A   GA A+ G KY D VRVVS+     G  +    GGT
Sbjct: 632 MVNQVIANNLPITWVETDIESAKKMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDGGT 686

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           H  +T E+ L  IVSES I AG+RRIEA+TG  A S    +++ LK +A  LK  +  + 
Sbjct: 687 HAQTTAELGLFKIVSESGIGAGVRRIEAVTGLAALSQFKAEEQALKVIADSLKAQKLTDA 746

Query: 757 VGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811
             +VE++  E + LQ  L   + +L           +   N   +I +++       L+ 
Sbjct: 747 PAKVEDLQVEIKTLQRHLTSVEAQLANAAAQDVFKDVKTQNGYQYITAQLQVSGMDGLRQ 806

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           V+D  ++   S +++L     +K + ++    E     F A DL +  A  +GGGGG GR
Sbjct: 807 VVDTWRENYPSDVLVLATHVDDKVSLIVAASPEANKKGFKAGDLIKAIAPKIGGGGG-GR 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N    + A + V++FL +
Sbjct: 866 PDMAQAGGKNPAGINDAFSAVSTFLDE 892


>gi|284991581|ref|YP_003410135.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064826|gb|ADB75764.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 897

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/915 (34%), Positives = 478/915 (52%), Gaps = 54/915 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLE F   GH ++PS+SL+   DP+L+FT +GMVPF    TG+E   Y   
Sbjct: 1   MQTAEIRRRFLEHFASRGHTVVPSASLVSP-DPSLLFTVAGMVPFIPYLTGREPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+L+T      
Sbjct: 60  TSVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAIQHAWELVTGSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  R+++TVY +D+EA + W +I+GL  ++I R+   DN+W   + GP GPCSEI+
Sbjct: 116 GLGFDPERIWVTVYLDDDEAAEAWHRIAGLPVERIQRLGKKDNYWHTGQPGPGGPCSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P     G+R++EIWNLVFMQ+E  + + +        LPK +IDTGMG
Sbjct: 176 YDRGPQFGPDGGPLVDTAGDRFLEIWNLVFMQYELTDVRSKEDFRIVGELPKKNIDTGMG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ID    ++  + ++ G+ Y    ++ V  RV+ DH+RS   LI 
Sbjct: 236 LERVAYLLQGVDNLYEIDEVAPVLHRAAEIAGVTYGAKHDDDVRLRVVADHVRSGLMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGY+LRR++RRA+   +LLG  E  +  LLP     M ++YPEL      I
Sbjct: 296 DGVTPGNEGRGYILRRLLRRAVRSMKLLGVDEATLPALLPVSRDAMKASYPELETDFARI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+E F +TL  G  L D  +          L+GD AF L+DT+G P+D+  ++ 
Sbjct: 356 SSVAYAEEEAFRRTLSSGTALFDTAVREARAAGTASLSGDQAFSLHDTYGFPIDVTLEMA 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLR 464
             +G+  +D   F   +++QR RARA +    +G+ + + +  L   +G T +  YD LR
Sbjct: 416 AEQGVT-VDEEGFRALMQQQRDRARADARAKRTGSVDVLAYRRLLADHGPTDWRAYDTLR 474

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                  D +VL     +    G +S              A  G+   VV D+TPFYAE+
Sbjct: 475 T------DSRVLGLVSELAAEEGPTST------------PAGPGEITRVVLDRTPFYAES 516

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+ D G    DG R ++ DVQ+  +G+  H   V  G LR    L   +D + R    
Sbjct: 517 GGQVADAGVLTWDGGRAEVLDVQRPVKGLVAHQVRVLEGELREGAELTAEVDREWRLSAC 576

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG    Q+GS   P  LR D      +++ +   IED  N  + 
Sbjct: 577 QAHSGTHVVHAALRQVLGPQALQSGSYNRPGYLRLDFAWQGALSAQQRHDIEDVANAAVR 636

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V    M   +A A GA AL G  Y ++VRVV +    GG  S  LCGGTHV  + +
Sbjct: 637 ADHRVSATYMTLPEAQAFGALALFGETYGEQVRVVEI----GGPWSRELCGGTHVQGSAQ 692

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  L +  ESS+ +G RR+EA+ G     +L  + + ++ L   LK    ++V RV  + 
Sbjct: 693 IGTLALTGESSVGSGSRRVEAVVGLEGFRYLARERDLVRQLGELLKTPTDDLVERVSGML 752

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
              R +    A+ + Q               +  V  ++   + +   +L+++   ++ +
Sbjct: 753 ARLRDVDKELAELRAQQTLAAAGELAAGARDVGGVAVVTGAPTGLAGGDLRTLALDVRGR 812

Query: 820 IQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + +    ++L+      K +++  +      R   A D+ R +A  + GG GGG+P +AQ
Sbjct: 813 LSADRPAVVLLASESGGKVALVTALNPAAQARGLTASDVLRAAAAPV-GGRGGGKPDVAQ 871

Query: 877 SGGPNGNKADQAIAG 891
            GG +      A+  
Sbjct: 872 GGGTDPAGIPAALQA 886


>gi|254457078|ref|ZP_05070506.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085870|gb|EDZ63154.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 849

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/896 (37%), Positives = 502/896 (56%), Gaps = 54/896 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  +L+FF+   H+ + S+ L+P +D +L+F N+GMVPFK+IFTG+         T+ 
Sbjct: 2   DIREEYLKFFESKNHDRIASAPLVP-DDASLLFNNAGMVPFKSIFTGEIPRPANPRATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L   +
Sbjct: 61  QTCLRAGGKHNDLENVGHTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITEVIKLPVDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++TV++ D+EA  LW+K   +S D+I+R+  +DNFW M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LWVTVHESDDEAELLWQK--HVSKDRILRLGDDDNFWQMGDTGPCGPCSEIFYDQGAENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + +   +N
Sbjct: 179 SGEEDYLGGDGDRFLEIWNLVFMQYEKSADGTMTELPKPSIDTGMGLERVVAIKEGALSN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           Y   LF  +I   +++ G +YE  +  ++RVI DH+R++ FL+A GI  +NEGRGYVLRR
Sbjct: 239 YGSSLFMPIIVDVQKLIGKEYEYVSGASYRVIADHIRTTVFLLAQGINFSNEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ E  M  L+  +   MG  Y  L      ++E +  E+ RF KT++
Sbjct: 299 ILRRAVRHGYLLGFREAFMYKLVDTVVEIMGGEYDYLTVKATAVKEQIELEEARFFKTIE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  +  L   E  +G+VAFKLYDT G PLD+ +D+L  + L  +D   F + + 
Sbjct: 359 SGIALFEEEV--LSTKETFSGEVAFKLYDTFGFPLDLTEDMLKGKNLK-LDSAKFEELML 415

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR+RA+A   G G   T   +  L EK+G   F+GY+ +  S                 
Sbjct: 416 EQRTRAKAAWKGSGDADTHGDFKELLEKFGENTFVGYEFMAHSC---------------- 459

Query: 484 LTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                   V+A++ +  + V       K  V+ D TPFYAE+GGQ GD G   G     +
Sbjct: 460 -------KVQALLDENFKSVSSLSPDTKGWVLLDITPFYAESGGQTGDCGELEG---FAK 509

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D +K         ++++   L+    +   +D   R +++ +HSATHLLH  L  +LG
Sbjct: 510 VEDTRKFFGLNLSQISVIDE--LKIGTVVDAKVDIS-RNEITKHHSATHLLHAILYDVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+SQ GS +  D LRFD +H K +T  EL  IE  VN+ + + +P  T++M  EDA  S
Sbjct: 567 DHISQAGSLVESDRLRFDFSHPKALTQTELVEIETRVNNDVLRAIPANTQVMGIEDAKNS 626

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A  G KY D VRVVS         S   CGG HV +T  I    I  ES + AG+RR
Sbjct: 627 GAKAQFGEKYGDEVRVVSF-----DRASVEFCGGVHVDNTANIGSFIITKESGVSAGVRR 681

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ GQ A  +   Q   +K + + +K    +V+  +  +     +L+    + +    
Sbjct: 682 IEAVCGQAAYKYFCEQRSLVKEVEAEVK--NLDVLAGISRLKSNIAELKTELKEAQESSK 739

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           VE        ++N ++ ++ E+ S ++K  +D L+ + +    ML  +  +K   ++   
Sbjct: 740 VE----ITANEINGVAVVVEELASGDIKEKIDELKNQNEKLCAMLFQVKGDK--VLIAAG 793

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            ++      A D  +  A +LGGGGG GRP  AQ+GG +  K  +A      F+ +
Sbjct: 794 IKNADA--KAGDWIKEIAPILGGGGG-GRPDFAQAGGKDKTKLPEAKVEALKFITE 846


>gi|34610207|ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|47117019|sp|Q8BGQ7|SYAC_MOUSE RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|23270912|gb|AAH33273.1| Alanyl-tRNA synthetase [Mus musculus]
 gi|26351767|dbj|BAC39520.1| unnamed protein product [Mus musculus]
 gi|148679538|gb|EDL11485.1| alanyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 968

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/971 (32%), Positives = 482/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K + +         +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYQ--SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 CGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL 770

Query: 742 LKSLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL++    +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|226306472|ref|YP_002766432.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|226185589|dbj|BAH33693.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 890

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/926 (34%), Positives = 469/926 (50%), Gaps = 70/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMVPF   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFK+ AI  AW LLT      
Sbjct: 60  TSVQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +D  RL+ TVY +D+EAF +W+   G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGIDPTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+              LPK +IDTGMG+
Sbjct: 176 YDRGAEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  + ++TG  Y  ++   V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +     +      ++ GD AF L+DT+G P+D+  ++  
Sbjct: 355 NVAVGEETAFLKTLASGSALFENAAETVKSSGKSVIAGDQAFALHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      GAT+F G+D L   
Sbjct: 415 EAGLT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALIVDGVRVPVAKAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G     G+  ++ DVQK A+ ++ H   V++G +     ++  +D + R+  +  
Sbjct: 511 QIADIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEITEGDVVLAHVDAEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YAVNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +GIRR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 QVTLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS----EVDSKELKSVMDALQKKI 820
            +  + +L   K K  L        K   +  +  I       V   +L+S++  ++ ++
Sbjct: 747 LKVAEKELEQTKAKAVLAAAGEYVAKAKRIGSVLVIAEPAPAGVGGNDLRSLVTDIKGRL 806

Query: 821 QSGIIMLVGISK-EKKASVLIVVTEDLLD-RFNAVDLAR------LSAKVLGGGGGGGRP 872
            S   ++  +   + K   ++  ++        A +L                       
Sbjct: 807 GSEPAVVALLGDVDGKVPFVVASSKAAQGLGVKAGELVASFGPKIGGRGGGKP------- 859

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            MAQ  G +      A+  +   + +
Sbjct: 860 DMAQGSGSDSAGIPAALDAIRDRVGE 885


>gi|283458020|ref|YP_003362628.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134043|dbj|BAI64808.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 895

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/923 (35%), Positives = 502/923 (54%), Gaps = 65/923 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I   +++FF   GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQ
Sbjct: 5   EISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDL 120
           KC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT       F L
Sbjct: 64  KCIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKGGFGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL++T+Y+ D+EAF +W    G  A++I R+   +N+WS  + GP GP SEIF+D+G
Sbjct: 120 DPERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGLERMA 234
               G   G + + +RYIEIWNLVFMQ+++       + +    LPK +IDTG+G+ER+A
Sbjct: 180 PAY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGVERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFL 285
            +LQ   N Y+ D  + ++ A+ +++G KY G          + V  RV+ DH+RSS  L
Sbjct: 239 MLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRSSLML 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           IADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +     
Sbjct: 299 IADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVADDFE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F  T++ G   L+  ++   KD    ++G  AF L+DT+G P+D+  +
Sbjct: 359 RISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPIDLTLE 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G+  +D  +F + + EQR RA+A +        +            + F GY  L
Sbjct: 419 MAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTGYTEL 477

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                         + ++AI+  G  V  A +G K+EVV D+TPFYAE
Sbjct: 478 RT-----------------------ETKLRAILVDGVSVPAAKAGDKIEVVLDETPFYAE 514

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G + T   +V  +D Q RR  
Sbjct: 515 AGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQRRRDG 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS TH++H AL  +LG+  +Q GS      LRFD   S+ ++ +  + +E+  N  I
Sbjct: 575 EKAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWSEGLSESAKREVEEVANLAI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V+TR M   +A A GA +L G KY D VRVV +    GG  S  LCGGTHV S+ 
Sbjct: 635 RDNHEVITREMPLAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHVGSSA 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI  L +++E S+ +G RR+EA+ G  + +HL  +   +  L   +KV S  ++  ++ +
Sbjct: 691 EIGSLTLLTEGSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPEKINQ 750

Query: 763 IWEEYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
              + +  +   A+    KLQ     L  +   I  V  ++H   E+D+  ++ +   L+
Sbjct: 751 TLAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLALDLR 810

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +  S   ++  +       V++V T +        A  L R++A VLGGGGG G+  +A
Sbjct: 811 SRFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVLGGGGG-GKDDVA 869

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG + +K   A+  V   + +
Sbjct: 870 QGGGQDASKIGAALDAVRDAIAQ 892


>gi|116514511|ref|YP_813417.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|122274757|sp|Q048Z3|SYA_LACDB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830262|sp|Q1G947|SYA_LACDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116093826|gb|ABJ58979.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325126223|gb|ADY85553.1| Ala-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 877

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/916 (36%), Positives = 490/916 (53%), Gaps = 66/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DL
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+
Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++  G KY  N  + ++ ++I DH+R+ SF I DG 
Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I + 
Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++      +D+ ++G  AFK++DT+G P ++  +    +
Sbjct: 356 VKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +E Q+ RAR     L S  ++                          
Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +   K+  +           S +  I+   ++V++A  G+K  ++FD+TPFYAE GGQ+
Sbjct: 450 -ETLMKIKDKSVFEYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGGQV 507

Query: 529 GDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  ++ DVQ       +H   V    L    +  L ID   R  L  +
Sbjct: 508 ADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVV-LPLVKGQTYKLKIDRARREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T   + E     GA AL   KY D+VRVV +        S   CGGTH  +T +I 
Sbjct: 627 IQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K      +  ++  + E
Sbjct: 682 VFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E R  +  +A  + Q+N             + D+  ++ I       +L+ + D  + + 
Sbjct: 742 ELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEG 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   S++K   ++ +  + L     A DL +  A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFL 896
           N      AI    S L
Sbjct: 861 NPEGLQDAIDAAVSQL 876


>gi|260102891|ref|ZP_05753128.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075]
 gi|260083304|gb|EEW67424.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075]
          Length = 879

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 497/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 PKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA  + + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 295 LPSNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIENV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF   LD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     
Sbjct: 355 IQNEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F           
Sbjct: 415 GLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDV--TLMNIKDKSVF----------- 460

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 461 ------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 507

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL ID + R  L  +
Sbjct: 508 ADHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDLI-LPMEKGKEYVLKIDKERREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY D+VRVV +     G  SS  CGGTH S+T +I 
Sbjct: 627 IDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ +  
Sbjct: 682 IFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLES 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        Q+N            +  D+  ++ +       +L+ + D  +   
Sbjct: 742 DLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSGN 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLVLAAENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFLKK 898
                + AI  V   + K
Sbjct: 861 RPEGLNDAIKAVIEEISK 878


>gi|326693841|ref|ZP_08230846.1| alanyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 893

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/928 (36%), Positives = 504/928 (54%), Gaps = 72/928 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSAEVRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE  I  AW+LLT  + + L
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEVIPWAWELLTSPEWYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ RLY+TVY +D+EA K+W++ + L A  I  +   DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKERLYVTVYPKDQEAKKIWEEKTDLPAGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
                      E     E ERY+EIWN+VF QF              LP  +IDTGMGLE
Sbjct: 178 PAFQDLPDDDPEMYPGGENERYLEIWNIVFSQFNHLPGMTDNSQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNI----VNHRVIVDHLRSSSFLI 286
           R+ +V Q    N+D DLF  +IQA+E ++   KY+G        + +VI DH+R+ +F I
Sbjct: 238 RVVSVFQNGRTNFDTDLFLPIIQATEALSPNFKYDGTKDSDSNTSFKVIADHIRAITFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG +P+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+++    
Sbjct: 298 SDGAMPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTQLVPIVGEIMQSYYPEVLENAAR 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I++T+ +E++RF  TL  GL LLD V++         ++G  AFKL DT+G PL++ Q+ 
Sbjct: 358 IQKTVAAEEKRFNATLTGGLALLDDVIAAAKADGKTQISGADAFKLSDTYGFPLELTQEQ 417

Query: 405 LCARGLAGIDIISFNQAL-EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
               GL  +D+  FN+AL  ++     A S     G    +   LK    A++++G+   
Sbjct: 418 AAEAGLT-VDVDGFNEALQAQRARARAARSNDKSMGVQNAVLTDLK---VASEYVGWS-- 471

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ----GEIVEEAVSGQKVEVVFDQTP 519
                              ++    + +V  I Q       ++++AV+G++ ++VFD+TP
Sbjct: 472 -------------------EIAVDSAEVVAIIGQDADGIDALLDQAVAGEQRQLVFDKTP 512

Query: 520 FYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G  +     +  ++ DVQK   G  VH   V    +    ++ L +D 
Sbjct: 513 FYAEMGGQVADFGTVLNKQGDVVAEVIDVQKAPNGQHVHTVNVL-ADITLGENVDLRVDM 571

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
                +S NH+ATH+L  AL  +LG  V Q GS + PD LRFD T+  P+++A+L  IE 
Sbjct: 572 ARHIAVSKNHTATHMLDQALRNVLGGDVHQAGSLVEPDYLRFDFTNEGPVSAADLDRIEA 631

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  IA+N P+     + E A   GA A+ G KY D VRVVS+     G  +    GGT
Sbjct: 632 MVNAEIAKNAPISWMETDIETAQQMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDGGT 686

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           H  ST E+ L  IVSES I AG+RRIEA+TG  A +    ++  LK++A+ +K  +    
Sbjct: 687 HAQSTAELGLFKIVSESGIGAGVRRIEAVTGLEALALYKAEENALKAVAAQVKAQKITEA 746

Query: 757 VGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKS 811
             +V ++  E +  Q  L   + KL     D   + +   N  ++I++++       L+ 
Sbjct: 747 PAKVADLQAELKATQRTLESVEAKLANAAADEVFNDVKTSNGHTYIVAQLPVSGMDGLRQ 806

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGG 870
           V D  +    S +++L     + K ++++  + +       A DL +     +GGGGG G
Sbjct: 807 VADNWKATYPSEVLVLAA-DIDGKVNLIVAASPEANAAGIKAGDLIKAITPRVGGGGG-G 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           RP MAQ+GG N      A A VA FL +
Sbjct: 865 RPDMAQAGGKNPAGIPDAFAAVADFLAQ 892


>gi|229493550|ref|ZP_04387335.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229319511|gb|EEN85347.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 890

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/926 (34%), Positives = 469/926 (50%), Gaps = 70/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+SLI  +DP L+F N+GMVPF   F GQ+ P Y   
Sbjct: 1   MQTHEIRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFK+ AI  AW LLT      
Sbjct: 60  TSVQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +D  RL+ TVY +D+EAF +W+   G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GYGIDPTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+              LPK +IDTGMG+
Sbjct: 176 YDRGAEY-GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  + ++TG  Y  ++   V  RVI DH R+++ LIAD
Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N GRGYVLRR++RR +  A+LLG  +P M   +  +   M  +YP L      IE
Sbjct: 295 GVNPGNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+  F KTL  G  L +     +      ++ GD AF L+DT+G P+D+  ++  
Sbjct: 355 NVAVGEETAFLKTLASGSALFENAAETVKSSGKSVIAGDQAFALHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR RA+  +        +   +      GAT+F G+D L   
Sbjct: 415 EAGLT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVS- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V A++  G  V  A +GQ VEV+ D++P YAE+GG
Sbjct: 473 ----------------------EAHVLALIVDGVRVPVATAGQDVEVILDRSPLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+ D G     G+  ++ DVQK A+ ++ H   V++G +     ++  +D + R+  +  
Sbjct: 511 QIADIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEITEGDVVLAHVDAEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS TH++H AL  +LG +  Q GS   P  LRFD +    ++ ++ + IE   N+ +A N
Sbjct: 571 HSGTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T + + + A A GA AL G  Y D VRVV +    GG  S  LCGGTHV S+ +I 
Sbjct: 631 YAVNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E S+ +GIRR+EA  G  +  +L  +   L  L+S LKV    V  RVE + E 
Sbjct: 687 QVTLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVER 746

Query: 767 YR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS----EVDSKELKSVMDALQKKI 820
            +  + +L   K K  L        K   +  +  I       V   +L+S++  ++ ++
Sbjct: 747 LKVAEKELEQTKAKAVLASAGEYVAKAKRIGSVLVIAEPAPAGVGGNDLRSLVTDIKGRL 806

Query: 821 QSGIIMLVGISK-EKKASVLIVVTEDLLD-RFNAVDLAR------LSAKVLGGGGGGGRP 872
            S   ++  +   + K   ++  ++        A +L                       
Sbjct: 807 GSEPAVVALLGDVDGKVPFVVASSKAAQGLGVKAGELVASFGPKIGGRGGGKP------- 859

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            MAQ  G +      A+  +   + +
Sbjct: 860 DMAQGSGSDSAGIPAALDAIRDRVGE 885


>gi|256752916|ref|ZP_05493749.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748196|gb|EEU61267.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 757

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/785 (41%), Positives = 473/785 (60%), Gaps = 43/785 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     Q+  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I  K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +L   ++ L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 ETIDQGLTILQDYINELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      S   + I+ +L +    T+F+GYD    +           
Sbjct: 420 YTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYESN----------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                       S V AIV+  E+VEEA +G  V ++ D TPFYAE+GGQ+GD G    +
Sbjct: 467 ------------SKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILENE 514

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            + +++ D  KK    F+H   +ERG++     +   ID  +RR  + NH+ATHLLH AL
Sbjct: 515 NVLIKVKDC-KKVGDRFIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKAL 573

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             ILG HV Q GS +  D LRFD +H + +T  ELK IE+ VN+ I Q+L V       +
Sbjct: 574 KEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTYD 633

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +A+  GA AL   KY D+VRVV +       +S  LCGGTHV +T EI +  IVSES++ 
Sbjct: 634 EAVKEGAVALFTEKYGDKVRVVKI-----DDYSMELCGGTHVKNTNEIGIFKIVSESAVG 688

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           AG+RRIEA+TG  A  +L  ++E LK  +  LK     +V ++E + +  +       + 
Sbjct: 689 AGLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQL 748

Query: 778 KLQLN 782
           K+++ 
Sbjct: 749 KIKMA 753


>gi|319947816|ref|ZP_08022010.1| alanyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319438540|gb|EFV93466.1| alanyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 859

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/894 (36%), Positives = 471/894 (52%), Gaps = 57/894 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F + GH  +PS+SL+  +DP L+F N+GMVPFK  F GQE P Y   
Sbjct: 1   MQTHEIRRRFLDHFVRAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGQETPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT      
Sbjct: 60  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIRHAWSLLTSSLDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D   L++TVY +D+EA+ +W+ + G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GFGIDPALLWVTVYLDDDEAYGIWRDVIGVPEERIQRRGMADNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFMQ E+         +    LPK +IDTGMG+
Sbjct: 176 YDRGPAY-GVDGGPEADEDRYIEIWNLVFMQNERGEGSGKDSFEILGPLPKQNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E+++G KY  ++   V  RVI DH R++  LI+D
Sbjct: 235 ERVAFLLQGVENVYETDLLRPVIDTAERLSGAKYGADSASDVRFRVIADHARTAYMLISD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR +   RLLG T   M   +  +   +G ++PE +     IE
Sbjct: 295 GVTPGNEGRGYILRRLLRRIVRSVRLLGATGETMAEFMATVRDAIGPSFPETVSGYERIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL+ G  L +       +    +L+G  AF L+DTHG P+D+  ++  
Sbjct: 355 RIAVAEEAAFLKTLESGTQLFERAAESARRSGAAVLSGQQAFALHDTHGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D   F   + EQR+RA+A S        +   +      G T F G+  L   
Sbjct: 415 EAGL-QVDEEGFRSLMSEQRARAKADSQAKKHAHADLSVYRDFLDAGETVFTGFTDLTD- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  IV  G+ V  A  G +VE V D+TPFYAE+GG
Sbjct: 473 ----------------------ESRLLGIVSGGQAVPVAREGDEVEFVLDRTPFYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           QLGD G     G ++++ DVQK  + +++H  ++  G +     +   +D + R+  +  
Sbjct: 511 QLGDRGMISTAGFQMRVDDVQKIGKKLWIHKGVLTGGEVEAGQIVTAAVDPEWRKGATQG 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHL+H AL  ILG    Q GS   P  +RFD   S  I +  L  IE+  N  +  +
Sbjct: 571 HSATHLVHAALRQILGPEAVQAGSLNKPGYMRFDFNWSGSIPADVLAQIEEVTNSAVDAD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T     ++A   GA AL G  Y   VRVV +    GG  S  LCGGTHVSS+ +I 
Sbjct: 631 YGVNTIETTLDEAKRMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVSSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++ E+S+ +GIRR+EA  G  A  H   +   +  LA+ LK     +  R+  +  +
Sbjct: 687 PVSLLGEASVGSGIRRVEAYVGMDAYRHQARERALVSGLATSLKAPADELPDRIAALTAK 746

Query: 767 YRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R+ +         +L     DL  S   +  V F++H      + +L+++   L+ ++ 
Sbjct: 747 LRETEKALESLRAAQLASQAGDLLASAEDLDGVRFLAHSAPGGAAGDLRTLASDLKGRLG 806

Query: 822 SGI-IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           S   ++L+    + K   +I VT    +R   A DL +  +  L G  GGG+  
Sbjct: 807 SDAGVVLLTAPGQDKVPFVIAVTPAAQERGLRAGDLVKAISPAL-GARGGGKAD 859


>gi|148243479|ref|YP_001228636.1| alanyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|147851789|emb|CAK29283.1| Alanyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 915

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 508/907 (56%), Gaps = 53/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEF++  GH+ +PS+SLIP  DPT++ T +GM+PFK +F GQ++      T+ 
Sbjct: 45  AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRATSS 103

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + 
Sbjct: 104 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 159

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 160 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL- 218

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   NNY
Sbjct: 219 GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNNY 278

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+ +  + G+ Y   ++    + +VI DH R+ + LI DG+  +N GRGY+L
Sbjct: 279 ETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 338

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG ++P ++ +  A    M +AYP+L + + LI   L+ E+ RF +T
Sbjct: 339 RRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLET 398

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ ++I    GL+ +D+  F  A
Sbjct: 399 LERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEAA 455

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +E QR RA+A ++ +   T +     +     AT F GY+ L                  
Sbjct: 456 MEAQRQRAKAAAVSIDL-TLQGAIEQMAADLEATAFRGYEALEHP--------------- 499

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S V A+V  GE  + A +G  V++V D TPFY E GGQ+GD G   G  + +
Sbjct: 500 --------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQDLIV 551

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I  V ++ + + VHH  +ERG L     +   +D   RR+   +H+ATHLL  AL  ++
Sbjct: 552 SIESVNRQRD-VSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAALKQVV 610

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            S +SQ GS +  D LRFD    + +T AEL+ +E  +N  I +   +  + M  E A A
Sbjct: 611 DSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIEAAKA 670

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSE+ + +GIR
Sbjct: 671 AGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSEAGVASGIR 725

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G    ++L  +D  +K L+   KV    +  RV  + EE +      A  + +L
Sbjct: 726 RIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAARSEL 785

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--- 833
                         I +   +   +  VD   L+S    L  ++  G  +++G   +   
Sbjct: 786 AVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLPDPSD 845

Query: 834 -KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K  ++    + ++ +   A       AK+ GGGGG GRP++AQ+GG +G   D A+  
Sbjct: 846 LGKVILVAAFGKAVVAKGQKAGQFIGGVAKLCGGGGG-GRPNLAQAGGRDGAALDGALEQ 904

Query: 892 VASFLKK 898
             S L++
Sbjct: 905 AKSSLQQ 911


>gi|238855615|ref|ZP_04645916.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|260665325|ref|ZP_05866173.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|282933011|ref|ZP_06338405.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|313473100|ref|ZP_07813584.1| alanine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|238831759|gb|EEQ24095.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3]
 gi|239528663|gb|EEQ67664.1| alanine--tRNA ligase [Lactobacillus jensenii 1153]
 gi|260560829|gb|EEX26805.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US]
 gi|281302865|gb|EFA95073.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 878

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/920 (35%), Positives = 512/920 (55%), Gaps = 70/920 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   TSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY TVY +D ++ ++W+K +G+  D II++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 DKDKLYCTVYPKDVDSQRVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      E    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++  G KY  N  + V  ++I DH+R+ SF I DG 
Sbjct: 235 LSILQDAPTNFETDLFMPMIHETEKMSAGKKYATNKEDDVAFKIIADHVRAVSFAIGDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I++ 
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKVMESHYPEVLKQAPFIQKV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++       D+ ++G  AFKL+DT+G P ++  +    +
Sbjct: 355 IKNEEDRFGATLESGLTLLDDLIEKASANDDKTISGKDAFKLFDTYGFPYELTFEAAQDK 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F++ +E Q+ RAR     L S G  ++   ++K+K   ++F          
Sbjct: 415 GLK-VDKAGFDKEMEAQKERARKARGDLQSMGRQDETLMNIKDK---SEF---------- 460

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                           +     + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ
Sbjct: 461 -------------EYGVYEEKHAKLIDIVVNDKLVDKA-DGESATLIFDKTPFYAERGGQ 506

Query: 528 LGDTGCAIGDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G           ++ DVQ       +H   +    +      VL ID   R  L  
Sbjct: 507 VADHGDIYDQDGDLVAKVIDVQHAPNDQNLHFVDLV-LPMEKGKEYVLKIDAHRREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  VN  I +
Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T I + E     GA AL   KY D+VRVV V        S   CGGTH ++T +I
Sbjct: 626 NIEVKTTITDPETGKKMGALALFNGKYGDKVRVVQV-----NDFSIEFCGGTHCANTAQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AGIRRIEA+T ++A  +L  +D  L+ +   +K     ++  ++  + 
Sbjct: 681 GIFKIISEQAIGAGIRRIEAVTSEKAYEYLANRDALLEEIKKEVKATKAEDIKTKITSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE    Q   ++ + ++N         +  ++  +  ++ I +     +L+ + D  +  
Sbjct: 741 EELHASQKKASELESEINAAKASDIFENVQEVNGLKVIAAIANVNGMNDLRELADNWKSS 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +S +++L   + + KA+++I +T+  LD+   A +L +++A + GGGGG GRP+MAQ+G
Sbjct: 801 NKSDVLVLAC-ANDGKANMVISLTDAALDKGLKAGNLIKVAAPIFGGGGG-GRPNMAQAG 858

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G N      AIA V + + K
Sbjct: 859 GKNPAGLKDAIAAVINEINK 878


>gi|269837587|ref|YP_003319815.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269786850|gb|ACZ38993.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 879

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/921 (34%), Positives = 496/921 (53%), Gaps = 69/921 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  F+EFF + GH  +PSSSL+P NDPT++ T +GM      F G E+P    
Sbjct: 1   MKS-NEIRRIFVEFFAERGHLHVPSSSLVPHNDPTVLLTTAGMQQMTPYFLGLERPPSVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T++QKC R      D+D VG    H TFFEMLGNFS G YFK  AI  AW+LLT+ F +
Sbjct: 60  MTSIQKCFRTV----DIDEVG-DEEHLTFFEMLGNFSVGDYFKAEAISWAWELLTERFGI 114

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
            + RL  +V+  DE AF  W+   G+    I R+    N+W  +  TGP GP SEIF+D+
Sbjct: 115 PRERLRPSVHRNDEFAFAFWRDEIGIPEHLIARLGDEHNWWGPVGTTGPNGPDSEIFYDR 174

Query: 180 GECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           GE +  G P      +   R++EIWNLVFM+F ++    +  LP+ +IDTGMGLER++ V
Sbjct: 175 GEELGCGRPDCGPGCDHCNRFLEIWNLVFMEFYKEEDGSQRPLPRKNIDTGMGLERISMV 234

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294
           LQ   + ++ DL+  ++  + ++ G++Y  +  V+   RVI DH R+ +FLI DG+ P N
Sbjct: 235 LQGVGSVFETDLYMPVLLKAAELAGVQYRQDPKVDRSLRVIADHGRAVTFLIGDGVFPGN 294

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGR YVLRR++RRA+ + RL+G   P +  +   +       YP L + +  I + +R E
Sbjct: 295 EGRSYVLRRVLRRAVRHGRLIGIDRPFLTEVADVVIDMFAEHYPNLREQQERIRQVIRHE 354

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E FG+TL  G+   + + + L    + ++ G  AF+LYDT+G P ++ +++    GL  
Sbjct: 355 EEHFGRTLATGIGRFETLAADLRARGETVVPGAEAFRLYDTYGFPYELTEELASDAGLT- 413

Query: 413 IDIISFNQALEEQRSRARAHS--LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           +D   F++A+  QR ++RA +      + T   ++ +L +K   T F+GY+         
Sbjct: 414 VDREGFDRAMAAQREQSRASAAIFSDEARTRAALYANLTDK--PTVFLGYETTE------ 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             +  V  I+      E A +G++VE+V DQTPFY E GGQ+GD
Sbjct: 466 -----------------ATGTVVGILGAEAAQESAEAGEQVEIVLDQTPFYPEGGGQVGD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    ++ D Q+ A G+ VH  IV  G ++   +    +D Q R  +  NH+AT
Sbjct: 509 TGNIQTDTGVFEVEDTQRPAPGVIVHRGIVREGYIQVGQTAEARVDAQRRADIRRNHTAT 568

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS + PD LRFD T  +P+ +A L+ +++ VN  I  + PV 
Sbjct: 569 HLLHTALRRVLGEHVQQAGSLVAPDRLRFDFTSLEPVGAAALREVQEIVNQQILADSPVQ 628

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             I   ++AIA GA AL G KY D VRVV++        S  LCGGTHV+ TGEI L  I
Sbjct: 629 AEIKPYQEAIAEGAIALFGEKYGDNVRVVTIPS-----FSKELCGGTHVNHTGEIGLFVI 683

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             ESS+ +G+RR+EA+TG+ A  + +   E  + L   L V    +  +V  + E  R+ 
Sbjct: 684 TEESSVASGVRRVEALTGRAAAEYALRLQEMSQRLVRDLHVPLDELPAQVAALQERLRER 743

Query: 771 QLIHAKRKLQLN---VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +    + +++L    + DL      +     ++  +   +   L  + D L+ K+ SG++
Sbjct: 744 EREIERLRVELASVQIGDLIEKAVTVDGTRVLAARVEAPNRDTLLQMGDRLRDKLASGVV 803

Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLS-------AKVLGGGGGGGRPHMAQS 877
           +L  +  + + ++L +VT DL+ R  +A  L R                       +AQ 
Sbjct: 804 VLGAVI-DDRPALLAMVTRDLVQRGVDAGKLIREITPVVGGRGGGRP--------ELAQG 854

Query: 878 GGPNGNKADQAIAGVASFLKK 898
           GG + ++ D A+    S +++
Sbjct: 855 GGTDPSRLDAALETARSVVER 875


>gi|323486958|ref|ZP_08092273.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum
           WAL-14163]
 gi|323399730|gb|EGA92113.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum
           WAL-14163]
          Length = 817

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/850 (37%), Positives = 476/850 (56%), Gaps = 48/850 (5%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L
Sbjct: 1   MTTCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGL 56

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RLY +VY ED+EAF +W K  G+  ++I R    DNFW     GPCGPCSEI++D+G
Sbjct: 57  DPDRLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHGA-GPCGPCSEIYYDRG 115

Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           E    G P  +   E +RYIE+WN VF QF          L   +IDTGMGLER+A V+Q
Sbjct: 116 EKYGCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQ 175

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
           E  + + +D  K L+    ++   KY+ N+   V+ R++ DH++S +F+I+DGI+P+NEG
Sbjct: 176 EVDSLFTVDTNKALLDRVCELAHTKYQENHETDVSLRIVADHIKSCTFMISDGIMPSNEG 235

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG     M  L   +       YPEL +   +I + L  E++
Sbjct: 236 RGYVLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEED 295

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F KT+D+GL +L  + + + K+   +L+GD AFKLYDT+G P+D+ ++IL  + L+ +D
Sbjct: 296 KFNKTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LD 354

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F  A+++Q+ +ARA          +   +   +    T+F GY  L           
Sbjct: 355 EDGFTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGYGKLA---------- 404

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S +  +  + EIVE    GQ   ++  +TPFYA  GGQ  D G  
Sbjct: 405 -------------EESEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVI 451

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                   + D  K   G   H   V +G+ +T  ++ L +D +NR     NHSATHLLH
Sbjct: 452 TAQDAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLH 511

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL T+LG+HV Q GS +T D LRFD TH   +T  E+ ++E  VND IA  LPV T +M
Sbjct: 512 KALRTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVM 571

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             ++A  +GA AL G KY D VRVV +     G  S+ LCGGTHV +T  I    IVSE+
Sbjct: 572 TLDEAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEA 626

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG+RRIEA+T     ++    +++L   A  +K +   +  ++E + +E + L   +
Sbjct: 627 GIAAGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSEN 686

Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            K K +L  + L        ++  V  ++  + +VD   L+++ D L++K+  G++++  
Sbjct: 687 EKLKSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIAS 746

Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           + ++ K +++  VT +   +  +A +L +  A ++GGGGG GRP+MAQ+GG N      A
Sbjct: 747 V-QDGKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGGG-GRPNMAQAGGKNPAGIPDA 804

Query: 889 IAGVASFLKK 898
           +   A  +++
Sbjct: 805 LKKAAETVQE 814


>gi|227484973|ref|ZP_03915289.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237128|gb|EEI87143.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 872

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/920 (34%), Positives = 496/920 (53%), Gaps = 70/920 (7%)

Query: 1   MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R ++LEFF  +  H LL S  L P +D TL+  N+GM P K  FTG+ K  
Sbjct: 1   MKNLGMNELRKSYLEFFGNEKNHTLLKSFPLTPIDDDTLLLINAGMAPLKKYFTGELKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ Q+CVR G    D++ VG+T RH TFFEMLGNFSFG YFK  AI  A++ LTK+
Sbjct: 61  NNRATSSQRCVRTG----DIERVGKTERHGTFFEMLGNFSFGDYFKREAINWAFEFLTKK 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++++  L++TVY +D+EA+ +W    G+ A++I+R    DNFW + E GPCGPCSEI+ 
Sbjct: 117 LEINKDDLWVTVYYDDDEAYNIWHDEIGMPAERILRQGKEDNFWEL-EVGPCGPCSEIYV 175

Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+G         +   ++  +R++E+WNLVF QF + N+     L   +IDTGMGLER+A
Sbjct: 176 DRGPERAVDENDNQPGNDNSDRFMEVWNLVFTQFNKDNQGNYTNLSHPNIDTGMGLERIA 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
            +LQ K N ++ID+ K +I   E+++G  Y+ N  + V+ RVI DH ++ +FL++DG++P
Sbjct: 236 MILQGKDNIFEIDVMKEIISEIEKLSGKTYKANKVDDVSIRVIADHAKAMTFLVSDGVIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA  + +LLG   P +  ++  +       Y EL+     I + + 
Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGPFLNKIVDKVIETYKVEYDELVDNMDNIHKVIS 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF KT+++GL  LD +++ + K+  +IL+G  AFKLYDT+G PLD+ ++IL  + L
Sbjct: 356 DEEDRFQKTINQGLEKLDSLIADMEKNNIKILDGSEAFKLYDTYGFPLDLTKEILEEKNL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + +E QR+ AR           + +   L +    T F GY+         
Sbjct: 416 -DVDDEKFEEEMENQRNLARNARKTDNKHKHDNL---LADHLEKTDFQGYENFD------ 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            +   + AI   GE      +  K  +V D+T FY E GG++ D
Sbjct: 466 -----------------LEGKLLAIFVDGEENSSIKAPNKGIIVSDKTSFYPEGGGEVAD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG         ++ DVQKK   I  H+  V  G           ID + R  +  NHSAT
Sbjct: 509 TGFIKTSNACAKVVDVQKK-NDIIFHYVEVTEGEFVRGSVARFVIDLERRLDIQRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG +++Q GS +  D LRFD T++K +++ EL+ IE+ +N  I + LPV 
Sbjct: 568 HLLDKALKNVLGQNINQAGSLVDEDKLRFDFTYNKALSNEELRKIEEEINAKIREQLPVK 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+ + +   GA AL   KY D VRVVS+     G +S  LCGG HV++T E+++  I
Sbjct: 628 KEYMDYKKSEELGAVALFEDKYKDIVRVVSM-----GDYSIELCGGCHVNNTAEVLMFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SESS  AG+RRIEAITG+     L+ ++  +K +A+ L  +  N+  ++  +  E    
Sbjct: 683 KSESSAAAGVRRIEAITGKAVFEELISKENTIKEIANDLDANINNIKSKINSLKSEIASK 742

Query: 771 QLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                + K Q N +          K+  VN +          EL+ + +  + +  + +I
Sbjct: 743 DSEIKRLKSQSNKDVYSELKSKIEKVNGVNLLIAKFDNASVDELRELENKFKNEYDNLVI 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV-------LGGGGGGGRPHMAQSG 878
           +   +S   K    + V ++L D++NA  + R  A++                 + AQ+G
Sbjct: 803 IFATVS--DKIIFTVSVDDNLTDKYNAGKIVREIAQITGGNGGGKK--------NFAQAG 852

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G + +  D+A+      +K+
Sbjct: 853 GSDISALDKALKRAYEIIKE 872


>gi|255327164|ref|ZP_05368239.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295782|gb|EET75124.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 895

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/923 (35%), Positives = 502/923 (54%), Gaps = 65/923 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I   +++FF   GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQ
Sbjct: 5   EISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDL 120
           KC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT       F L
Sbjct: 64  KCIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKGGFGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL++T+Y+ D+EAF +W    G  A++I R+   +N+WS  + GP GP SEIF+D+G
Sbjct: 120 DPERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGLERMA 234
               G   G + + +RYIEIWNLVFMQ+++       + +    LPK +IDTG+G+ER+A
Sbjct: 180 PAY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGVERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFL 285
            +LQ   N Y+ D  + ++ A+ +++G KY G          + V  RV+ DH+RSS  L
Sbjct: 239 MLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRSSLML 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           IADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +     
Sbjct: 299 IADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVADDFE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F  T++ G   L+  ++   KD    ++G  AF L+DT+G P+D+  +
Sbjct: 359 RISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPIDLTLE 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G+  +D  +F + + EQR RA+A +        +            + F GY  L
Sbjct: 419 MAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTGYTEL 477

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                         + ++AI+  G  V  A +G K+EVV D+TPFYAE
Sbjct: 478 RT-----------------------ETKLRAILVDGVSVPAAKAGDKIEVVLDETPFYAE 514

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G + T   +V  +D Q RR  
Sbjct: 515 AGGQAADTGVITGNGFIIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQRRRDG 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  N  I
Sbjct: 575 EKAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWGEGLSESAKREVEEVANLAI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V+TR M   +A A GA +L G KY D VRVV +    GG  S  LCGGTHV S+ 
Sbjct: 635 RDNHEVITREMPIAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHVGSSA 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI  L +++ESS+ +G RR+EA+ G  + +HL  +   +  L   +KV S  ++  ++ +
Sbjct: 691 EIGSLSLLTESSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPEKINQ 750

Query: 763 IWEEYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
              + +  +   A+    KLQ     L  +   I  V  ++H   E+D+  ++ +   L+
Sbjct: 751 TLAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLALDLR 810

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +  S   ++  +       V++V T +        A  L R++A VLGGGGG G+  +A
Sbjct: 811 SRFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVLGGGGG-GKDDVA 869

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG + +K   A+  V   + +
Sbjct: 870 QGGGQDASKIGAALDAVRDAIAQ 892


>gi|294672801|ref|YP_003573417.1| alanine--tRNA ligase [Prevotella ruminicola 23]
 gi|294472795|gb|ADE82184.1| alanine--tRNA ligase [Prevotella ruminicola 23]
          Length = 887

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/935 (34%), Positives = 493/935 (52%), Gaps = 89/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F +FF+   H ++PS+ ++  +DPTLMFTN+GM  +K+I  G   P  +  
Sbjct: 1   MTANEIRDSFKKFFESKQHAIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI +AW+ L     L+
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLVDVLKLN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
              LY+TV++         D+EA K W K   +  D II    +DNFW M +TGPCGPCS
Sbjct: 121 PEDLYVTVFEGSPEENIPRDDEAAKYWAK--HVPEDHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD-QGECIPG-----GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           EI  D +           G    +++  + IEIWN+VFMQF ++       L    IDTG
Sbjct: 179 EIHVDSRTPEQKAASGKTGRELVNQDDPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------------EGNNIVNHR 273
           MG ER+  ++Q K +NYD D+F+ +I+A +Q+TG+KY              + +  V  R
Sbjct: 239 MGFERLVRMMQGKHSNYDTDVFQPIIKAEQQITGLKYFTFEEETESPISKEQDDINVAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           V  DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   +  +  L+P L  E
Sbjct: 299 VCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQKDGFLYKLVPTLVAE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKL 390
           MG A+PEL   + L+ + ++ E+E F +TL++G+ +L+  ++ L       L+G  AF+L
Sbjct: 359 MGGAFPELEAQQQLVTKVIKEEEESFLRTLEKGIGMLNDAMNTLKAEGKTELDGVQAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   ++   FN  +++Q+ RAR       +      W  L  
Sbjct: 419 FDTYGFPLDLTELICRENGFT-VNEEQFNVEMQKQKDRARNA-----AAVENSDWVELAA 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  QF+GYD       +   RKV  +K                               
Sbjct: 473 --GEQQFVGYDYTEYECHIIRYRKVTQKKNEF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   + I D  K+  G  VH  IV++        
Sbjct: 503 YELVLDNTPFYGEMGGQVGDCGVLVNEAETINIIDT-KRENGQSVH--IVKQLPKDPAAQ 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  ILG HV Q GS ++PD LRFD +H + +T  
Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQILGDHVEQKGSFVSPDTLRFDFSHFEKVTDE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +L+ +E  VND+I Q++ +     +  ++A   GA AL G KY D+VRVV          
Sbjct: 620 QLREVERMVNDMIRQDIHIDEHRDVPFDEAKKLGAIALFGEKYGDKVRVVRFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H SSTG I    I+SESS+ AGIRRIEA TGQ     L   ++ LK++ +F 
Sbjct: 674 SCEFCGGIHASSTGRIGFFKIISESSVAAGIRRIEAKTGQECEELLYQTEDILKAVKAFF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEV 804
             +  ++ G +++  EE+  ++      + Q      + L     ++  V  +S ++  +
Sbjct: 734 N-NAKDLQGVIKKYIEEHDSMKKEIEAFQAQAVERAAKQLVDKAREVNGVKVVSAVLP-M 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
           +    K +   ++  ++  ++ ++G     K  + I++++D++     NA  + R +AK+
Sbjct: 792 NPAAAKDLAFKIRAAVEGSLLCVLGTHDNNKPQLSIMMSDDMVSDHGLNAGQMVREAAKL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG N +    A+  V    K
Sbjct: 852 IQGG-GGGQPHFAQAGGKNADGLSAAVDKVLELAK 885


>gi|194759416|ref|XP_001961945.1| GF14684 [Drosophila ananassae]
 gi|190615642|gb|EDV31166.1| GF14684 [Drosophila ananassae]
          Length = 966

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/971 (32%), Positives = 464/971 (47%), Gaps = 85/971 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
                 +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   FLTAKEVRDAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW  LT
Sbjct: 63  AKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWQFLT 122

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +        + D E  +LW  + GL  + I+  +  DNFW M ETG
Sbjct: 123 ERLGLPKDRLYVTYFGGDKASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L +A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGTDDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVNTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQATIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +       + 
Sbjct: 421 VDLTQLMAEEKSL-QIDMEGYEAA----KHNSYILSQGKGASKIEEINLDVHAISQLQE- 474

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            G      S F  +   V  ++         +S + A+  + + V E  SGQK  +V D+
Sbjct: 475 QGVAPTNDS-FKYKYEAVSDERDSAYNYGECTSKIVALRFENQFVNEITSGQKAGIVLDK 533

Query: 518 TPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           T FYAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L I
Sbjct: 534 TNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHI 592

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   
Sbjct: 593 DVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVAKT 652

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEY 683
           E+   +++  N+P+  +      A    G  ++    Y D VRV+S            + 
Sbjct: 653 ENLTKEMVYNNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDS 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   +
Sbjct: 713 EAGEKTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQ 772

Query: 744 SLASF------------LKVSQGNVVGRVEEI---------WEEYRKL------QLIHAK 776
            +                K     +V   E+I          +E R L       L   +
Sbjct: 773 EIVKLKATIDADTSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKE 832

Query: 777 RKLQLNVEDLSCHKIADV----NFMSHIISEVDS----KELKSVMDALQKKIQSGIIMLV 828
           R L+  V      K  ++         ++ ++++    K L + +  ++ ++ +   M  
Sbjct: 833 RALRAAVSTTVVEKAKELCEKNPDAIVLVEQLEAFNNTKALDAALKQVRSQLPNAAAMFF 892

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D
Sbjct: 893 SVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVD 951

Query: 887 QAIAGVASFLK 897
           + +     F +
Sbjct: 952 EIVELATKFAQ 962


>gi|315224360|ref|ZP_07866194.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314945750|gb|EFS97765.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 877

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/924 (35%), Positives = 490/924 (53%), Gaps = 76/924 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP Y+ V
Sbjct: 1   MTSQEIREQFLKFFKSKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++  E        EA+ +WK+   ++ + I+     DNFW M + GPCGPC+
Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAYDIWKE--RIAENHILLGNKKDNFWEMGDQGPCGPCT 178

Query: 174 EIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI      D+ +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDEEKAKVPGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLR 280
            ER+  VLQ+K +NYD D+F  LI   E++T  +Y   + V           RVI DH+R
Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTPEQEQVNIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F I DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG  +PE
Sbjct: 299 AVAFAITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +    + L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQN-SPGKQLSGGKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +GL   D  SF + L++Q+ R+RA +           W  L++     +FIG
Sbjct: 418 LTALILSEKGLTM-DEASFEEQLQKQKERSRAAAQ-----IKADDWVILRDD-DEEEFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + R+                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H +  E             +   +
Sbjct: 504 FYPEGGGQVGDKGTLQSANGELIYILDTKKENNLIIHIS--EHLPTNLNDPFKAEVHSIS 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  ELK +E  V
Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLV 621

Query: 640 NDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+     +  + A+ SGA AL G KY DRVR++          S  LCGGTH
Sbjct: 622 NRRIFEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRMIQFG------DSKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  +   Q++ ++ +   LK +Q  V  
Sbjct: 676 VKNTGDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLKNAQDPV-K 734

Query: 759 RVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMD 814
            +  + EE   L  +L   +++    ++     +  +VN +  ++ +VD++   LK +  
Sbjct: 735 AIRHLQEENAALHKELEQLRKEQAKQLKTSIKAEFTEVNGVQCLVKQVDAEVATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRP 872
            L  ++++  I      +E KA +L  + +DL      +A  + R   K + GGGG G+P
Sbjct: 795 ELGNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYIHGGGG-GQP 853

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
             A +GG N     +A++ V  +L
Sbjct: 854 FFATAGGKNPGGITEALSKVKDYL 877


>gi|300811577|ref|ZP_07092061.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497437|gb|EFK32475.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 877

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/916 (35%), Positives = 491/916 (53%), Gaps = 66/916 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S  R  FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DL
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY+TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G
Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+
Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++  G KY  N  + ++ ++I DH+R+ SF I DG 
Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGA 295

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N GRGYVLRR++RRA    R LG     +  L+P +   M S YPE+      I + 
Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++      +D+ ++G  AFK++DT+G P ++  +    +
Sbjct: 356 VKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  +E Q+ RAR     L S  ++                          
Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQD------------------------- 449

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +   K+  +           S +  I+   ++V++A  G+K  ++FD+TPFYAE GGQ+
Sbjct: 450 -ETLMKIKDKSVFEYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGGQV 507

Query: 529 GDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        +  ++ DVQ       +H   V    L    +  L ID   R  L  +
Sbjct: 508 ADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVV-LPLVKGQTYKLKIDRARREGLRHS 566

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I + 
Sbjct: 567 HSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWEA 626

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T   + E     GA AL   KY D+VRVV +        S   CGGTH  +T +I 
Sbjct: 627 IQVKTTETDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQIG 681

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWE 765
           +  I+SE +I AG+RRIEA+T + A  +L  + + L  + + +K ++ + +  ++  + E
Sbjct: 682 VFKIISEQAIGAGVRRIEAVTSKLAYEYLASRSDILDQIQAQVKATKADGIQSKIASLQE 741

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           E R  +  +A  + Q+N             + D+  ++ I       +L+ + D  + + 
Sbjct: 742 ELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEG 801

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   S++K   ++ +  + L     A DL +  A + GGGGG GRP+MAQ+GG 
Sbjct: 802 KSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGGG-GRPNMAQAGGK 860

Query: 881 NGNKADQAIAGVASFL 896
                  AI    S L
Sbjct: 861 KPEGLQDAIDAAVSQL 876


>gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 954

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/929 (34%), Positives = 492/929 (52%), Gaps = 73/929 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  SIR  FLEFF   GH++LPSSSL+P  DPT++ T +GM+ FK IF G+        T
Sbjct: 55  SGDSIRRRFLEFFASRGHKVLPSSSLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCAT 113

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q+C+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L  
Sbjct: 114 TAQRCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPA 169

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+++++Y++D+EAF++WK   G+S ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 170 NRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPE 229

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                     +  R+IE +NLVFMQ+ +        L + +IDTG+GLER+A +LQ+  N
Sbjct: 230 RGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 289

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I    ++  + Y+  N     + +VI DH+R+  +LI+DG+ P+N GRGY
Sbjct: 290 NYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIGRGY 349

Query: 300 VLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RRA+   + LG             +  +   +         ++      I E +
Sbjct: 350 VVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRIIEEI 409

Query: 352 RSEDERFGKTLDRGLVLLDG-------VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           R E+  F KTL+RG  LLD        +         L+G  AF LYDT G P++I  ++
Sbjct: 410 RQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEITAEV 469

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG++ ID+  F   +E QR +++A    +     +     + +    T+F+GYD L 
Sbjct: 470 AEERGVS-IDMNGFEVEMENQRRQSQAAHNVVKLTVEDDA--DMTKNIADTEFLGYDSL- 525

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    ++VK+++  G+ V     G +VEV+ D+TPFYAE+
Sbjct: 526 ----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAES 563

Query: 525 GGQLGDTGCA--IGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           GGQ+ D G      DG      ++++DVQK  + IFVH   V+ G L     +   +D  
Sbjct: 564 GGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEAAVDAD 622

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R++  ++H+ATHLL  AL  ++G   SQ GS +  D LRFD   ++ +   EL+ IE  
Sbjct: 623 LRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECL 682

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGT 697
           +N  I     + T+++   DA  +GA A+ G KY++  VRVV V        S  LCGGT
Sbjct: 683 INRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPG-----VSMELCGGT 737

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++  L S LKV   +V 
Sbjct: 738 HVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVT 797

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNV--------EDLSCHKIADVNFMSHIISEVDSKEL 809
            RVE + EE R  +   +  + +  V        +  +      +  +   + + D+  L
Sbjct: 798 NRVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSL 857

Query: 810 KSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
           KS  + L   ++  + +++G S EK K S++   +  ++     A       AK+ GGGG
Sbjct: 858 KSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGG 917

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G+P+ AQ+GG        A+      L
Sbjct: 918 G-GKPNFAQAGGRKPENLPSALEKAREDL 945


>gi|227549179|ref|ZP_03979228.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078739|gb|EEI16702.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 888

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/922 (34%), Positives = 485/922 (52%), Gaps = 60/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--Q 59
                IR  F + F   GHE +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRERFTQHFINAGHEPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFASG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKHAWALLTNPVS 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              + LD +RL++TVY +D+EA  +W+   G+ A++I R+   DNFWSM   GPCGPCSE
Sbjct: 116 EGGYGLDPQRLWVTVYLDDDEAAGIWENTIGVPAERIQRMGMEDNFWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMG 229
           I++D+G    G   G   +  RY+EIWNLVFM+  +    ++       LPK +IDTGMG
Sbjct: 176 IYYDRGPEH-GKEGGPIADDTRYLEIWNLVFMESIRGEGDKKGFEIIGELPKKNIDTGMG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I A+ ++TG +Y      + V  RVI DH R++  +I
Sbjct: 235 VERVACILQGVDNVYETDLLRPVIDAAIELTGARYNAGNTRDDVRFRVIADHSRTAMMII 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P+NEGRGY+LRR++RR +  ARLLG T P++   +  +   M  ++PE+   +  
Sbjct: 295 LDGVTPSNEGRGYILRRLLRRIVRSARLLGATAPVLEPFMNTIMDTMTPSFPEIADNRER 354

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F KTL+ G    +   + +       L G  AF+L+DT+G P+D+  ++
Sbjct: 355 IVRVAVAEERAFMKTLESGTHRFEEAAASVKAAGAGTLPGAQAFELHDTYGFPIDLTLEM 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  FN+ +  QR RA+A +     G  ++  +        T+F+G+  L 
Sbjct: 415 ARESGLE-VDMDEFNREMALQRERAKADNKAKKQGNLDESLYREWVDSHPTEFVGFSELA 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  +V+ GE V E   G +VEV+ D TP YAE+
Sbjct: 474 HD-----------------------GTVIGLVRDGEKVTEVSQGDEVEVILDVTPMYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  +     L +TDVQK  + +++H A V+ G L     +   +D   R    
Sbjct: 511 GGQMGDRGRIVVGDTVLNVTDVQKVGKKLWIHKATVQNGGLDLGQGVTTEVDSSWRHGAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ATHL+H AL  +LG    Q GS   P  LRFD  +++ ++  +L+ I    N  + 
Sbjct: 571 QAHTATHLIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYTEQLSDEQLREIATITNQAVD 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  V T   + E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV  + +
Sbjct: 631 ADFAVNTIETSLEEAKAMGAMALFGENYGDVVRVVEI----GGPFSIELCGGTHVDHSSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + ++ ESS+ +G RRIEA +G  +  +   +      LA+ LK     +  R+ ++ 
Sbjct: 687 IGPVAVLGESSVGSGARRIEAYSGLESFRYFSREAALASGLAAELKTPTEQLPDRIAQLT 746

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
           +  R  +   A  + Q              ++A  + +S  +   + + +L+++   +++
Sbjct: 747 DRLRAAEKELAAMRRQQLSSHTAQYVEQAQQVAKFSLVSVKLPDGLGAGDLRTMASDVRE 806

Query: 819 KIQSGI-IMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ +   ++++  S + K    + VT+  +     A DL +L    + G GG G+P +AQ
Sbjct: 807 RLGARPGVVVLASSVDGKVPFAVAVTKPAVEAGVKAGDLVKLIGGYVDGKGG-GKPDLAQ 865

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
             G N        + V   L +
Sbjct: 866 GSGSNPEGLSAGFSAVRDHLAQ 887


>gi|116074098|ref|ZP_01471360.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116069403|gb|EAU75155.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 892

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/912 (37%), Positives = 507/912 (55%), Gaps = 56/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF+  GH+   S+SL+P  DPT++ T +GM+PFK IF GQ++      T
Sbjct: 16  SGAEIRAAFLDFFEARGHKRTASASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F LD 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQQVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIYPLIETAAGLAGVDYKALDEKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M  AYP+L++ K +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIAKPFLTVMGEASIALMQEAYPQLLERKEVILAELKREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K   + G  AF+LYDT+G PL++ Q+I    GL  +D+  F 
Sbjct: 370 ETLERGEKLLADVLA--AKPAQIAGAQAFELYDTYGFPLELTQEIAEEHGLT-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+EEQR RA+A ++ +     + I   +  +  AT F GYDLL  S             
Sbjct: 427 AAMEEQRQRAKAAAVSIDLTLQDAIDQ-VAAELEATSFRGYDLLEHS------------- 472

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
                     S V+A+V  GE  ++A +G  V+VV D TPFY E GGQ+GD G  +GDG 
Sbjct: 473 ----------SSVQALVVNGEPAQQAGAGDAVQVVLDTTPFYGEGGGQVGDRGVLVGDGP 522

Query: 539 ---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                + + +   +   +FVH   VERG L     +   +D   RR+   NH+ATHLL  
Sbjct: 523 DGNGLIVVIEGVSRNRSVFVHSGRVERGSLSIGDVVHGQVDKACRRRAQANHTATHLLQA 582

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++   + Q GS +  + LRFD    + + + EL+ IE  +N  I++   +  + M 
Sbjct: 583 ALKQVVDPGIGQAGSLVDFERLRFDFHCPRAVKADELEQIEALINGWISEAHSLEVQEMA 642

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            E A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ES 
Sbjct: 643 IEQAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESG 697

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRRIEA+ G    ++L  +D  +K L    K     +V RV  + +E +      A
Sbjct: 698 VAAGIRRIEAVAGGAVLAYLNERDLVVKQLGDRFKAQPAEIVERVLALQDELKSTGKALA 757

Query: 776 KRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V   +        + ++  +   +  VD   L+    +L  ++  G  +++G 
Sbjct: 758 AAQAELAVAKSAALASKAVAVGELQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGG 817

Query: 831 SKE----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +     K  ++    + ++ +   A       AK+ GGGGG GRP++AQ+GG +G   
Sbjct: 818 LPDPADQGKVILVAAFGKTVIAQGQQAGKFIGGIAKLCGGGGG-GRPNLAQAGGRDGGAL 876

Query: 886 DQAIAGVASFLK 897
           D A+A     L+
Sbjct: 877 DGALASAREQLE 888


>gi|37903407|gb|AAP57355.1| Alanyl-tRNA synthase [Mus musculus]
          Length = 968

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/971 (32%), Positives = 482/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K + +         +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYQ--SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 CGPAGSLTSVEFCGGTHLRNSSHEGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL 770

Query: 742 LKSLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL++    +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|74213943|dbj|BAE29394.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/971 (32%), Positives = 481/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMRDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K + +         +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYQ--SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 CGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL 770

Query: 742 LKSLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL++    +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               A V                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKAGVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|116071953|ref|ZP_01469221.1| alanyl-tRNA synthetase [Synechococcus sp. BL107]
 gi|116065576|gb|EAU71334.1| alanyl-tRNA synthetase [Synechococcus sp. BL107]
          Length = 887

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/908 (36%), Positives = 506/908 (55%), Gaps = 53/908 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F+Q+ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 16  TGAEIRAAFLCFYQERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ F +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVFGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G   P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLIGINRPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 370 ETLERGEKLLSEVLD--SKPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +     + I   +     AT F GY +L                
Sbjct: 427 EAMEQQRQRAKAAAVSIDLTLQDAIDQ-VVATQNATAFQGYQVLE--------------- 470

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 471 --------QPSCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 523 IVAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L+ IE  +N  IA+   ++   M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLEQIETLINGWIAEAHGLLVEEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D VRVV          S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 642 KAAGAVAMFGEKYADVVRVVD-----VPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKR 777
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +     LI A+ 
Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756

Query: 778 KLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           +L +        K   +     +   +  VD   L+    +L  ++  G  +++G   + 
Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGAGLQGAAQSLAAQLGDGAAVVLGGLPDP 816

Query: 834 ---KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    +D+   +  A       AK+ GGGGG GRP++AQ+GG +G     A+
Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGG-GRPNLAQAGGRDGAALAGAL 875

Query: 890 AGVASFLK 897
               + L+
Sbjct: 876 ETARTELE 883


>gi|205830240|sp|A5GWM4|SYA_SYNR3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 882

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/907 (37%), Positives = 508/907 (56%), Gaps = 53/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + IR  FLEF++  GH+ +PS+SLIP  DPT++ T +GM+PFK +F GQ++      T+ 
Sbjct: 12  AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRATSS 70

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + 
Sbjct: 71  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 126

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + 
Sbjct: 127 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL- 185

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ   NNY
Sbjct: 186 GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNNY 245

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+ +  + G+ Y   ++    + +VI DH R+ + LI DG+  +N GRGY+L
Sbjct: 246 ETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 305

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RLLG ++P ++ +  A    M +AYP+L + + LI   L+ E+ RF +T
Sbjct: 306 RRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLET 365

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ ++I    GL+ +D+  F  A
Sbjct: 366 LERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEAA 422

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           +E QR RA+A ++ +   T +     +     AT F GY+ L                  
Sbjct: 423 MEAQRQRAKAAAVSIDL-TLQGAIEQMAADLEATAFRGYEALEHP--------------- 466

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                   S V A+V  GE  + A +G  V++V D TPFY E GGQ+GD G   G  + +
Sbjct: 467 --------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQDLIV 518

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            I  V ++ + + VHH  +ERG L     +   +D   RR+   +H+ATHLL  AL  ++
Sbjct: 519 SIESVNRQRD-VSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAALKQVV 577

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            S +SQ GS +  D LRFD    + +T AEL+ +E  +N  I +   +  + M  E A A
Sbjct: 578 DSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIEAAKA 637

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSE+ + +GIR
Sbjct: 638 AGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSEAGVASGIR 692

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+ G    ++L  +D  +K L+   KV    +  RV  + EE +      A  + +L
Sbjct: 693 RIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAARSEL 752

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--- 833
                         I +   +   +  VD   L+S    L  ++  G  +++G   +   
Sbjct: 753 AVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLPDPSD 812

Query: 834 -KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K  ++    + ++ +   A       AK+ GGGGG GRP++AQ+GG +G   D A+  
Sbjct: 813 LGKVILVAAFGKAVVAKGQKAGQFIGGVAKLCGGGGG-GRPNLAQAGGRDGAALDGALEQ 871

Query: 892 VASFLKK 898
             S L++
Sbjct: 872 AKSSLQQ 878


>gi|297624147|ref|YP_003705581.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165327|gb|ADI15038.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 917

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/924 (37%), Positives = 513/924 (55%), Gaps = 62/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK------ 55
           ++  ++R  FLEFF+  GH + PS+ L   +DP L+F  +GM  FK  F G         
Sbjct: 22  TSPDALRRKFLEFFRSKGHLIYPSAPL-KSDDPGLLFNVAGMQQFKPYFQGATPKFPGVE 80

Query: 56  PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            V+  V T QKC+RAGGK +D++NVGRT RHHTFFEMLGNFSFG YFK  AI  AW+ LT
Sbjct: 81  GVWPRVATSQKCMRAGGKDSDIENVGRTRRHHTFFEMLGNFSFGDYFKREAIGWAWEFLT 140

Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-----TGP 168
             +   LD  RLY TVY +D+EA+ +WK   GL   ++ R    +NFW         +GP
Sbjct: 141 APEWLGLDPERLYATVYLDDDEAYNIWKDEVGLPEARLSRFGEGENFWPANAIKDERSGP 200

Query: 169 CGPCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           CGPCSEIF+D+G     P     ++  G+R++EIWNLVF QF  +N      LP+ +IDT
Sbjct: 201 CGPCSEIFYDRGPAYGSPDETGPNTGSGDRFVEIWNLVFTQFNLEN-GVLTPLPQQNIDT 259

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           G GLER A V+ +  + Y  +LF+ +I+  E+++G+ Y     V+HR+I DH+RS S  I
Sbjct: 260 GAGLERFAAVIADVKDAYATELFQPIIRRLERLSGVPYRDLESVHHRIIADHVRSVSMCI 319

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADGILPAN+G GYV++ ++RRA   A LLG  EP++  L+  +   MG AYPE+  A+  
Sbjct: 320 ADGILPANDGAGYVIKMLLRRASRQAYLLGLREPVLHQLVSGVVEAMGEAYPEVKDAQAR 379

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  +R+E+E F +TL+ G+  + G+L  LG D  L GDVAF L+ T+G PLD+ +++  
Sbjct: 380 IEGIVRAEEESFLRTLESGIARVSGLLDELGGD-TLPGDVAFDLWQTYGFPLDLTEEMAQ 438

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG+  +D   +  A E  RS +RA            ++  L E +G T F+GY      
Sbjct: 439 ERGVR-VDREGYAHAREAARSLSRAARGEGALFGGTDVFGQLAEAHGETAFVGYSA---- 493

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + V+A+VQ GE V EA  G  V+VV D TPFYAE GG
Sbjct: 494 -------------------RDAEAAVRALVQGGEAVSEAGEGTHVQVVLDTTPFYAEGGG 534

Query: 527 QLGDTGCAIGDGIRLQ----ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           Q+GD G     G   +    +T   K   G+ VHHA V RG L+T   +   +D   R +
Sbjct: 535 QVGDAGVLEWRGGDHEGKALVTTTTKTKGGVVVHHARVLRGTLKTGQRVRAAVDPS-RTE 593

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              +H+ATHLLH AL ++LG+HV+Q GS + P+ LRFD +H +P++ +EL+ +E  VN  
Sbjct: 594 TEKHHTATHLLHAALRSVLGTHVAQAGSLVAPERLRFDFSHPQPLSESELRRLEALVNRW 653

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVS 700
           I  +  V  R++  E+A A+GA  L G KY   VR+VSV  E       S+ LCGGTHV+
Sbjct: 654 IQADFTVSWRVVPLEEARAAGAMMLFGEKYGANVRMVSVTPERDPKSSVSTELCGGTHVA 713

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG + +  I  E ++ AG+RR+EA+ G+ A S+L      L + A  L V+ G +  R+
Sbjct: 714 RTGTLGVFVITGEEAVSAGVRRVEALVGEAALSYLADLRATLAAAAKSLGVTPGELGPRL 773

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED------LSCHKIADVNFMSHIISEVDSKELKSVMD 814
           E +  + +  Q   A+ + +L          L   +    ++    +  +D+  L+   D
Sbjct: 774 ERLQSDLKAAQRTAAELRDRLAAAQTAGESGLEVSEAGGFSYAVAQLGGLDASALRGAAD 833

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
            L  +  + ++++          +++  ++    R  +A  L    A+  GGGGG GRP+
Sbjct: 834 RLLARSGADLVVV-----GSGPLLVVKASDAAQARGAHAGRLVGEIARRAGGGGG-GRPN 887

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ+G  +  +  +A+A +   L+
Sbjct: 888 LAQAGVKDPAQLGRALAALPDILE 911


>gi|73957022|ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) isoform 1 [Canis familiaris]
          Length = 968

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/969 (32%), Positives = 478/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +G+  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGM-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +               V + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 476 KGLEATEDSPKYNYH--SDSSGSYTFENVVATVVALRRDKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +        +++ T    +  G +V H     G LR    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+  N +I    PV T+      A A  G  A+    Y D VRVVS+             
Sbjct: 653 EEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +    
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESLKN 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL+   + +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 773 SLSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLKKIMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPETSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  + + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|197099554|ref|NP_001125391.1| alanyl-tRNA synthetase, cytoplasmic [Pongo abelii]
 gi|75042108|sp|Q5RC02|SYAC_PONAB RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|55727911|emb|CAH90708.1| hypothetical protein [Pongo abelii]
          Length = 968

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/971 (33%), Positives = 483/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASKIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  PSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            DL       K +  +        +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 476 RDLEVTDDSPKYNYHL--DSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLKVGDQVWL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I    PV T+  +   A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L      
Sbjct: 711 SGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAGSL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            K L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL 
Sbjct: 771 KKPLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTAAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|256852223|ref|ZP_05557609.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260661745|ref|ZP_05862656.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|297205611|ref|ZP_06923007.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16]
 gi|256615269|gb|EEU20460.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN]
 gi|260547492|gb|EEX23471.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN]
 gi|297150189|gb|EFH30486.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16]
          Length = 878

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 507/919 (55%), Gaps = 68/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   TSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+ TVY +D ++ K+W+K +G+  D II++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 DKDKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      E    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++  G KY  N  + +  ++I DH+R+ SF I DG 
Sbjct: 235 LSILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I++ 
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++       D+ ++G  AFKL+DT+G P ++  +    +
Sbjct: 355 IKNEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDK 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F++ ++ Q+ RAR     L S G  ++   ++K+K   ++F          
Sbjct: 415 GLK-VDKAGFDKEMDAQKERARKARGDLQSMGRQDETLMNIKDK---SEF---------- 460

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                           +     + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ
Sbjct: 461 -------------EYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGGQ 506

Query: 528 LGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        +  ++TDVQ       +H   +    +      VL ID   R  L  
Sbjct: 507 VADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVDLV-LPMEKGKEYVLKIDAHRREGLRH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  VN  I +
Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T I + E     GA AL   KY D+VRVV +        S   CGGTH S+T +I
Sbjct: 626 NIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHCSNTAQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T ++A  +L  +D  L+ +   +K     ++  ++  + 
Sbjct: 681 GIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKTKITSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           EE    Q   A+ + ++N    S     + +VN +  I +  D     +L+ + D  +  
Sbjct: 741 EELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELADNWKAS 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   +  K   V+ +    L     A +L +++A V GGGGG GRP+MAQ+GG
Sbjct: 801 NKSDVLVLACANDGKANMVISLADAALDKGLKAGNLIKVAAPVFGGGGG-GRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
            N     +AI  V + + K
Sbjct: 860 KNPAGLKEAITAVINEINK 878


>gi|282932649|ref|ZP_06338063.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
 gi|281303223|gb|EFA95411.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1]
          Length = 878

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 507/919 (55%), Gaps = 68/919 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  +L+FF+++GH +LPS SLIP +DPTL++ NSG+   K  F G   P  + +T
Sbjct: 5   TSSEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 65  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +L+ TVY +D ++ K+W+K +G+  D II++   DNFW + E GPCGP +EIF+D+G
Sbjct: 121 DKDKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRG 176

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      E    P  +IDTGMGLER+
Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERV 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I  +E++  G KY  N  + +  ++I DH+R+ SF I DG 
Sbjct: 235 LSILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGA 294

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE+++    I++ 
Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKV 354

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E++RFG TL+ GL LLD ++       D+ ++G  AFKL+DT+G P ++  +    +
Sbjct: 355 IKNEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDK 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           GL  +D   F++ ++ Q+ RAR     L S G  ++   ++K+K   ++F          
Sbjct: 415 GLK-VDKAGFDKEMDAQKERARKARGDLQSMGRQDETLMNIKDK---SEF---------- 460

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                           +     + +  IV   ++V++A  G+   ++FD+TPFYAE GGQ
Sbjct: 461 -------------EYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGGQ 506

Query: 528 LGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        +  ++TDVQ       +H   +    +      VL ID   R  L  
Sbjct: 507 VADHGDIYDQNGDLVAKVTDVQHAPNDQNLHFVDLV-LPMEKGKEYVLKIDAHRREGLCH 565

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHL+H AL  +LG H  Q GS + PD LRFD T   P+T  E++++E  VN  I +
Sbjct: 566 SHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLVNQKIWE 625

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V T I + E     GA AL   KY D+VRVV +        S   CGGTH S+T +I
Sbjct: 626 NIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHCSNTAQI 680

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764
            +  I+SE +I AG+RRIEA+T ++A  +L  +D  L+ +   +K     ++  ++  + 
Sbjct: 681 GIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKTKITSLE 740

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819
           EE    Q   A+ + ++N    S     + +VN +  I +  D     +L+ + D  +  
Sbjct: 741 EELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELADNWKAS 800

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +S +++L   +  K   V+ +    L     A +L +++A V GGGGG GRP+MAQ+GG
Sbjct: 801 NKSDVLVLACANDGKANMVISLADAALDKGLKAGNLIKVAAPVFGGGGG-GRPNMAQAGG 859

Query: 880 PNGNKADQAIAGVASFLKK 898
            N     +AI  V + + K
Sbjct: 860 KNPAGLKEAITAVINEINK 878


>gi|324999314|ref|ZP_08120426.1| alanyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 886

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/922 (36%), Positives = 489/922 (53%), Gaps = 63/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   F   F++NGH  +PS+SLI   DP L+F N+GMV FK  F G     Y   
Sbjct: 1   MQTHEIVRRFTAHFERNGHTPVPSASLI-LEDPQLLFVNAGMVQFKPYFLGDVPAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+M GNFSFG YFK  AI+ AW L+T      
Sbjct: 60  TSIQKCVRT----PDIDEVGKTTRHTTFFQMAGNFSFGDYFKRGAIEFAWSLITNSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  R+++TVY++D+EA  LWK I+GL   +I R   +DN+W M   GP GPCSEI+
Sbjct: 116 GYGFDPERIWVTVYNDDDEAIALWKDIAGLPEQRIQRRGGDDNYWDMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E+      +       LP  +IDTGMG+
Sbjct: 176 YDRGPEF-GAEGGPEADEDRYLEIWNLVFMQDERGELSPKKGHPPIGTLPHKNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQE  N Y+ DL + +I  +E+++G +Y     + V  RVI DH RSS  +I D
Sbjct: 235 ERVAFLLQEVNNVYETDLVRPVIAKAEELSGRRYGRNEEDDVRFRVIADHARSSMMIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RR +  ARLLG T P +      +   M   YPEL      I 
Sbjct: 295 GVTPGNEGRGYVLRRLLRRIVRSARLLGVTGPCLGEFAAVVRDTMSPTYPELATDFERIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
             +R+E++ F  TL  G  + +G ++         L GD AF+L+DT+G P+D+  ++  
Sbjct: 355 AVIRAEEDTFRATLTAGEKIFEGAVAEARSTGRTTLPGDQAFQLHDTYGFPIDLTLEMAD 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
             GLA +D   F   ++EQRSRA+A + G   G  +  ++ ++ + +GAT F+GY  L  
Sbjct: 415 EAGLA-VDRERFTALMDEQRSRAKADAAGRKVGFVDASVYRAVLDTHGATDFLGYQSLNS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  +++ G+ V  A  G +VEV+ D+TPFYAEAG
Sbjct: 474 -----------------------ESRIVGLLRDGQTVPAAEQGDQVEVLLDRTPFYAEAG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  DTG   G    +++ DVQ    G+ VH  +V  G +  +  +V  +D   R  +S 
Sbjct: 511 GQQADTGVLRGGSFEIRVDDVQSPVAGLRVHRGVVTAGTVTLDAEIVAEVDPARRSAISR 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIA 644
            H+ATHL+H  +   LGS  +Q GS   P  LRFD T     +  A L  IE+ VN ++ 
Sbjct: 571 AHTATHLVHAGVRGALGSSAAQAGSLNAPGRLRFDFTSPTGAVDPAALVEIEEEVNSVLQ 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           Q+  + T   + + A   GA  L G KY DRVRVV     D G +S  LCGGTHV  TGE
Sbjct: 631 QDREIQTYETSMDSARKLGAMMLFGEKYGDRVRVV-----DMGDYSRELCGGTHVRRTGE 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++SE+SI +G+RR+EA+ G  A  H   +   +  LA  LK     +  R++ + 
Sbjct: 686 LGLVRVLSEASIGSGVRRVEALVGLDAFQHATTEHLLVNQLAEQLKARPEELPDRIQGLV 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQK 818
           E  R  +    K +    L           D++  + +       V   +L+++   ++ 
Sbjct: 746 ERLRTAERDLEKHRADAVLASAGSLADAAEDLDGTALVAVTAPDGVAGNDLRTLAADVRG 805

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           K+    G++ L  ++ + K S ++  T+   D    A  L    A  +GG GG G+P +A
Sbjct: 806 KLGDRPGVVALFAVA-DGKVSFVVATTKAARDNGVAAGKLIPEFAAAVGGRGG-GKPDLA 863

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q GG +    D AI  + S L+
Sbjct: 864 QGGGTDPAGIDAAIQKLRSALR 885


>gi|297155787|gb|ADI05499.1| alanyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 889

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/907 (36%), Positives = 499/907 (55%), Gaps = 62/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  VSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTSVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY ED+EA ++W+ + G+ A++I R+    NFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYKEDDEAERIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + +I  + ++TG+ Y    ++ V+ RV+ DH+R+S  LI D
Sbjct: 235 ERLAMILQGVHNMYETDNLRAVIDKATELTGVAYGAGHDSDVSLRVVADHMRTSVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   R+LG TE ++  L+  +   MG  YPEL+  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRILGATELVVGELVDVVLKTMGQQYPELLTDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F KTL  G  +LD  ++        +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKTLKAGTNILDTAVTDTKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G  +   +  + +  G+T F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADTSGSTVFTGYTDTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S +  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTIVGLLVDGLPSPAATEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D+G   +  G  +++ DVQ+   G+ VH   V+ G +         ID + RR ++
Sbjct: 511 GQLADSGRIRLDSGAVVEVRDVQQPVPGVSVHKGTVQVGEVTVGAGAYAQIDIKRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +  A L  +E  +N++++
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGAVLTDVEQKINEVLS 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ E+A   GA A  G KY DRVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEVMSMEEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSRLTDLVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQK 818
            + ++ +    + + +  L           DV  ++ +  +V     + +L+ ++  ++ 
Sbjct: 746 AKLKEAEKEIERFRAEKVLQAAAGLAAGAKDVRGVALVTGQVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +IQ     ++ L  ++  +  +V+            A DL R +AK LGGGGG G+P +A
Sbjct: 806 RIQGDRPAVVALFSVANGRPVTVIATNEAARERGLKAGDLVRAAAKALGGGGG-GKPDVA 864

Query: 876 QSGGPNG 882
           Q GG N 
Sbjct: 865 QGGGTNP 871


>gi|260911261|ref|ZP_05917862.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634634|gb|EEX52723.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 873

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/919 (36%), Positives = 492/919 (53%), Gaps = 73/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH++  S+ ++  +DPTLMFTN+GM  +K+I  G   P  + 
Sbjct: 1   MMTANEIRESFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK  AI  AW+ L     L
Sbjct: 61  RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + + +Y+TV++         D+EA + W K   L AD II    +DNFW M ETGPCGPC
Sbjct: 121 NPQDIYVTVFEGSEEEGIARDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IEIWN+VFMQF +++      LP   IDTGM
Sbjct: 179 SEIHLDSRSAKEKAEVPGANLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +IQ   +++G+KY  +    V  RV+ DHLR+ +F I
Sbjct: 239 GFERLVRSLQGKTSNYDTDVFQPVIQEISRLSGLKYGTDEKVDVAMRVVADHLRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP N   GYV+RRI+RRA+ YA   LG     M  LLP    EMG AYPEL   + 
Sbjct: 299 ADGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E++ F +TL++G+ +L+  +  L      +L+G  AF+L+DT+G PLD+ + 
Sbjct: 359 LIGRVMKEEEDSFLRTLEKGISMLNDEMERLKAEGKTMLDGAQAFRLFDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    GL  +D   F+  +++Q+ RAR       +      W  L+E  G   F+GYD  
Sbjct: 419 ICRENGL-QVDAAQFDVEMQKQKERARNA-----AAVENSDWVVLRE--GEQTFVGYDYT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +K                                E+V D TPFY E
Sbjct: 471 EYECHILRYRQVTQKKNTY----------------------------FELVLDYTPFYGE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD G  +     + + D  K+     +H  IV+      E   +  +D   R   
Sbjct: 503 MGGQVGDCGVLVNGEETVDVIDT-KRENNQSIH--IVKALPKAPEADFMACVDTDKREAS 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL +AL  +LG HV Q GS + PD LRFD +H + +T  EL+ +E  VND+I
Sbjct: 560 AANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            Q+LP+        E+A A GA AL G KY D VRVV          S   CGG H  ST
Sbjct: 620 RQDLPLDEHRDTPVEEAKAMGAVALFGEKYGDTVRVVRFGP------SCEFCGGIHARST 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I +  IVSESS+ AGIRR+EA+TG+R    +   ++ L+ + +    +  ++ G + +
Sbjct: 674 GRIGMFKIVSESSVAAGIRRVEALTGKRCEEAMYVLEDTLRGIRNLFN-NAKDLQGVIAK 732

Query: 763 IWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQK 818
             EE+  ++    K   Q    ++D       DVN +  +  +  +++++ K+++  +++
Sbjct: 733 YMEEHDAMRKEIEKFSAQAVERLKDSLVANAKDVNGLKVVKAVLPINAEQAKNLVFKVRE 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I   ++ +VG +   K  + I+ ++D++     NA  + R +AK++ GG GGG+PH A 
Sbjct: 793 AIPQNLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLIQGG-GGGQPHYAS 851

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +    A+      
Sbjct: 852 AGGKNLDGISVAVDKAVEL 870


>gi|323465940|gb|ADX69627.1| Alanyl-tRNA synthetase [Lactobacillus helveticus H10]
          Length = 894

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/918 (35%), Positives = 496/918 (54%), Gaps = 66/918 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S  R  FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 20  TSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 79

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG+T RH TFFEMLGNFS G YF++ AI  AW+ LT  K   L
Sbjct: 80  SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 135

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY TVY +D ++ ++W+K +G+ AD I+++   DNFW + E GPCGP +EIF+D+G
Sbjct: 136 PKEKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 191

Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
                  E  P   PG   E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+
Sbjct: 192 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 249

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290
            ++LQ+   N++ DLF  +I A+E++T G KY  N  +    ++I DH+R+ SF IADG 
Sbjct: 250 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 309

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+N GRGYVLRR++RRA    + LG     +  L+P +   M S YPE++  +  IE  
Sbjct: 310 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENV 369

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+ERF  TLD GL LLD ++    K  D+ ++G  AFK++DT+G P ++  +     
Sbjct: 370 IQNEEERFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDA 429

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GL  +D   F+  ++ Q+ RAR     L S   + +  +L      + F           
Sbjct: 430 GLK-VDKKGFDAEMQAQKERARKARGALQSMGRQDV--TLMNIKDKSVF----------- 475

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                         D      + +  IV   ++V++A  G+   +VFD+TPFYAE GGQ+
Sbjct: 476 ------------ERDTYEEPHAKLLDIVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQV 522

Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
            D G        L  ++TDVQ       +H   +    +      VL ID + R  L  +
Sbjct: 523 ADHGNIYDQDGELVAKVTDVQHAPNDQNLHFVDLI-LPMEKGKEYVLKIDKERREGLRHS 581

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  +LG H  Q GS + PD LRFD T  +P+T  E+KS+E+ VN  I + 
Sbjct: 582 HSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWEA 641

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + V T I   E+    GA AL   KY  +VRVV +     G  SS  CGGTH S+T +I 
Sbjct: 642 IDVKTTITTPEEGEKMGALALFDGKYGHKVRVVQM-----GDFSSEFCGGTHCSNTNQIG 696

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWE 765
           +  I+SES++ AG+RRIEA+T ++A  +L  +   L  + + +K     N++ +++ +  
Sbjct: 697 IFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPNNIIDKIDSLES 756

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           +    Q        Q+N            +  D+  ++ +       +L+ + D  +   
Sbjct: 757 DLHDCQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMNDLRELADNWKSGN 816

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +S +++L   +  K   ++ +  + L     A DL + +A + GGGGG GRP+MAQ+GG 
Sbjct: 817 KSDVLVLAAENDGKANMIISLGQKALDKGLKAGDLIKKAAPIFGGGGG-GRPNMAQAGGK 875

Query: 881 NGNKADQAIAGVASFLKK 898
                + AI  V   + K
Sbjct: 876 KPEGLNDAIKAVIEEISK 893


>gi|218258080|ref|ZP_03474507.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225799|gb|EEC98449.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii
           DSM 18315]
          Length = 875

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/920 (37%), Positives = 495/920 (53%), Gaps = 76/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F +FF    H+++PS+ ++   DPTLMFTN+GM  FK+I  G     Y  
Sbjct: 1   MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVDVLKL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY TV++         D+EA   W+K   L  D II    +DNFW M +TGPCGPC
Sbjct: 121 NPERLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    +++  + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADSSLEPLPARVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ +I+    + G  Y  +    V  RVI DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTSYGKDKQQDVAMRVIADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPELI  K 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQD 403
           LIE+ ++ E+E F +TL+ G+ LLD  +         +++G  AF LYDT+G PLD+ + 
Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKNVISGVDAFTLYDTYGFPLDLTEL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+   +I  F+  +++Q+ RAR  ++          W  LKE  G   F+GYDL 
Sbjct: 419 ILRENGMEA-NIDEFDVEMQKQKDRARNAAV-----IETGDWVVLKE--GGCNFVGYDLF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R++  +   +                             ++V DQTPFYAE
Sbjct: 471 ECDAEILRYRQIKQKNKVL----------------------------YQIVLDQTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I D   + + D  K+   + VH  +V +      ++    I+ + R Q 
Sbjct: 503 MGGQVGDTGWLIADDETIDVIDT-KRENNLPVH--LVAKLPKDVTVTFTAKINEKKRIQC 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++ +E  V++ I
Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEKI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N P+     M   +A A GA AL G KY D VRVV          S  LCGGTH+ +T
Sbjct: 620 RANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYGN------SIELCGGTHIPAT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  L +V ESSI AG+RRIEA+T + A ++     + L+ L +    +  N+   +++
Sbjct: 674 GMIGSLRVVGESSIAAGVRRIEAVTAEGAENYTFMLQDSLRELRAMFN-NVPNLSQTIKK 732

Query: 763 IWEEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQ 817
             EE  +L+     + K K+Q   +DL   K  + N +  ++   E +   +K +   ++
Sbjct: 733 AIEENAELKKQVGDYLKEKVQQLKKDLIA-KAVERNGVKVVVFRGEANVDAIKDLAFQIK 791

Query: 818 KK--IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHM 874
            +      +  + GI   +K +++++++E L+ +  NA  L + +AK++ GG GGG+PH 
Sbjct: 792 GESNTDEKVFFVAGIKDGEKCALMVMLSEQLVSEGLNAGKLVKDAAKLIQGG-GGGQPHF 850

Query: 875 AQSGGPNGNKADQAIAGVAS 894
           A +GG N     +A+  +  
Sbjct: 851 ATAGGKNVAGLGEAVEHILD 870


>gi|74196486|dbj|BAE34378.1| unnamed protein product [Mus musculus]
          Length = 968

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/971 (32%), Positives = 481/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T    DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYLGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K + +         +     + V A+ ++   V+E V+GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYQ--SDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 CGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETL 770

Query: 742 LKSLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            KSL++    +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|78185740|ref|YP_378174.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|78170034|gb|ABB27131.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902]
          Length = 899

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/904 (36%), Positives = 501/904 (55%), Gaps = 53/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 25  TGAEIRSAFLRFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRAT 83

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D 
Sbjct: 84  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDP 139

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 140 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 199

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 200 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 258

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 259 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 318

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 319 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 378

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 379 ETLERGEKLLSEVLD--SKPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 435

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +     + I   +     AT F GY  L                
Sbjct: 436 EAMEQQRQRAKAAAVSIDLTLQDAIDQ-VVATQKATAFQGYQRLE--------------- 479

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 480 --------QPSCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 531

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 532 IVAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 590

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L  IE  +N  IA+   ++   M  + A
Sbjct: 591 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 650

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 651 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 705

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKR 777
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +     LI A+ 
Sbjct: 706 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 765

Query: 778 KLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           +L +        K   +     +   +  VD   L+    +L  ++  G  +++G   + 
Sbjct: 766 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 825

Query: 834 ---KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    +D+   +  A       AK+ GGGGG GRP++AQ+GG +G     A+
Sbjct: 826 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGG-GRPNLAQAGGRDGAALAGAL 884

Query: 890 AGVA 893
               
Sbjct: 885 ETAR 888


>gi|188995245|ref|YP_001929497.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|188594925|dbj|BAG33900.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 876

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/916 (35%), Positives = 484/916 (52%), Gaps = 72/916 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF   GH+++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  
Sbjct: 1   MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY TV++         D+EA   W +   L  ++II    +DNFW M +TGPCGPC
Sbjct: 121 DPQRLYATVFEGSPEEGLDRDDEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      GL   ++   + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADSSLTPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI A   +TG+ Y  +  + +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIHALATMTGIGYGEDSASDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E+E F +TL+ G+ LL+  ++        +L+G  AF+LYDT G PLD+   
Sbjct: 359 LISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTAL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +D   F+  +++Q+ RAR       +      W  L+E  G ++F GYD  
Sbjct: 419 ILSENGMT-VDESGFDTEMQKQKERARNA-----AAVEAGDWVVLRE--GESKFSGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +                              +  +VV   TPFYAE
Sbjct: 471 ETETEILRYRQVKQKNK----------------------------EYFQVVLLDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD+G  I +          K+   + VH  ++++    T  + V  I+   RRQ 
Sbjct: 503 MGGQVGDSGQLIDESGVAYDIFDTKRENNLSVH--LMKKLPESTTDTFVARINQDKRRQA 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   ++  E++ +E+ V++ I
Sbjct: 561 EANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERI 620

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +        +   +A A GA AL G KY + VRV+          S  LCGGTH+ ST
Sbjct: 621 RADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYGS------SVELCGGTHIPST 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I    IV+ESSI +G+RRIEA+TG  A   +  +++ L ++      +  N++  +++
Sbjct: 675 GMIGTFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFNNNP-NLIKSIKK 733

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQK 818
           + EE   L+   A  K +  ++        DV      +      ++++  K +   +  
Sbjct: 734 MLEEDASLKKQIADMKHERMLKFKKSLLEQDVRRRGIRLFLFQEIMEAETAKDIAFQIAG 793

Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++Q   +++ G ++   K ++ +++++DL +   +A  L R +AK + GG GGG+PH A 
Sbjct: 794 ELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHIQGG-GGGQPHFAT 852

Query: 877 SGGPNGNKADQAIAGV 892
           +GG N      AI  +
Sbjct: 853 AGGKNPKGLPAAIQQI 868


>gi|307187766|gb|EFN72738.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 968

 Score =  803 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/973 (32%), Positives = 476/973 (48%), Gaps = 88/973 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            N   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 1   MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 60

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT 
Sbjct: 61  KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTD 120

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +  DE        E   LW  + G+ A  ++     DNFW M ETGP
Sbjct: 121 VLKLPADRLYVTYFGGDEKNGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGP 179

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+Q+ +++      LP+  ID G+
Sbjct: 180 CGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKSLPRKHIDCGL 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q K  NYD DLF  L  A E+ TG                 + +RV+ DH 
Sbjct: 239 GLERLVSVIQNKRANYDTDLFMPLFAAIEKATGAPSYQGKVGAEDVDGIDMAYRVLADHA 298

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 299 RTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVDLLGEVFP 358

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I + +  E+ +F KTL RG  LL+  ++ L   + + GDVA++LYDT+G P+
Sbjct: 359 EVTKDPQNIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESSDTVPGDVAWRLYDTYGFPV 418

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  IDI  +    EE + +A+  S     G  ++I   +   +  T+  
Sbjct: 419 DLTQLMTEEKGLK-IDIAGY----EESKKQAQLISQNKAGGIDDQINLDI---HAITEMQ 470

Query: 459 GYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            + +       K D KV+   K           IV A+ +    V++  SG++V ++ D+
Sbjct: 471 EHGIKPTDDSPKYDYKVISSVKYEEYEFAPCIGIVIALRRAKTFVDQVTSGEEVGILLDK 530

Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           T FYAE GGQ+ D G  +    +   +++ +VQ +A G  +H   V  G LR    +   
Sbjct: 531 TNFYAEQGGQIYDEGFLVKVDDEATEIRVKNVQVRA-GYVLHIGTVGEGTLRKGDKVYTN 589

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   RR +  NHSATH L++AL  +LG+   Q GS + PD LRFD T+  P+T+ ++K+
Sbjct: 590 VDTARRRLVMANHSATHALNYALRKVLGTGADQKGSLVAPDRLRFDFTNKGPMTTEQVKN 649

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH---- 689
            E+   D++ +N  +  +  N   A    G  A+    Y D VRV+S+      +     
Sbjct: 650 TENITADMVKENKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVISMGIPVDDLEKNPL 709

Query: 690 -------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                  S   CGGTH+  TG I    I SE +I  GIRRI A+TG  A           
Sbjct: 710 STAALETSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKAFRTATLLQ 769

Query: 743 KSLASF--------LKVSQGNVVGRVEEIWEE-----------------YRKLQ--LIHA 775
             L+             +    V ++ E+ EE                  ++L+  L   
Sbjct: 770 NQLSHLRETIETDNSGTNSKEYVKKIVELTEEIMHAVIPSWRKDNMRATLKELKKSLDDK 829

Query: 776 KRKLQLNVEDLSCHKIADV----NFMSHIISEVDS----KELKSVMDALQKKIQSGIIML 827
           +R  +  V +     I  +         ++  +++    K L S +  ++        +L
Sbjct: 830 ERAAKAAVANTVVETIQSIIQSRVGCQVLVEVLEAYSNTKALDSALKKIRVLSPETSALL 889

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + I ++ KK   L  V +  + +   A +  ++ A  +  G GGG+P  AQ+ G N    
Sbjct: 890 ISIDRDVKKIFALSSVPKSAVSKGLKANEWIQVIAPAM-QGKGGGKPESAQASGTNIACL 948

Query: 886 DQAIAGVASFLKK 898
           ++ I+    F  +
Sbjct: 949 NEIISRANEFANQ 961


>gi|188589293|ref|YP_001920519.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|251779892|ref|ZP_04822812.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|205830029|sp|B2V3W2|SYA_CLOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188499574|gb|ACD52710.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|243084207|gb|EES50097.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 879

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/908 (34%), Positives = 505/908 (55%), Gaps = 46/908 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  + +R  +L+FF+   H  L S SL+P ND +L+  N+GM P K  FTG ++P  + 
Sbjct: 3   FTKTNDLRDAYLKFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPKKR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TT QKCVR G    D+DNVG T+RH TFFEMLGNFSFG YFK+  I  AW+ LT   +L
Sbjct: 63  ITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVLEL 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + +LY+T+Y +D+EA++ W  ++ +    I R+   DNFW     GPCGPC+EI F + 
Sbjct: 119 PKEKLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHGA-GPCGPCTEIHFSRT 177

Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           + +P       E  + ++ IE+WNLVF QF+   K     L   +IDTGMGLER+A V+Q
Sbjct: 178 DEVPTNSEKFVELSDEDKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296
            K + ++ID  +++++    +  +KY  +N   V+ R+I DH+RS +F+I+D I+P+NEG
Sbjct: 238 NKNSIFEIDTLENILKEVGNLANVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + + LG  +  + +L   +  + GSAY +L   K  I++ ++ E++
Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCGSAYSDLEAKKDYIKKVIKIEED 357

Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +F +TLD G+ +L+ ++S L ++  ++L G   FKLYDT G P+++ ++IL    L+ +D
Sbjct: 358 KFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEDLS-LD 416

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ ++EQR RAR+         T+     +      T F GY+             
Sbjct: 417 EDGFHKEMKEQRERARSARKTSNYMGTDVKTLDVISGEIETTFDGYE------------- 463

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                      + + + VK +V   +     + G    VV D TPFYAE GGQ+GDTG  
Sbjct: 464 ----------NDSLIAEVKTLVNGEDFTNSIIEGNNAVVVTDVTPFYAEMGGQIGDTGTI 513

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             D  + ++ D +K   G  +H      G L+    + L +D   R  +  NH+ATHLL 
Sbjct: 514 YNDNFKGKVLDTKKNIGGKIIHFVEAISGELKVGDKVKLEVDNARRENIKRNHTATHLLD 573

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +LGSHV Q GS ++ D LRFD +H + +   EL  +E  VN+ I    PV T  M
Sbjct: 574 AALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTTEM 633

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + ++A  SGA  +   KY ++VRVV       G +S  LCGGTH+ +TG+I L  I+SE+
Sbjct: 634 DLQEAKNSGAVGIFDDKYAEKVRVVC-----AGEYSKELCGGTHIDNTGKIGLFKIISEN 688

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA+TG  A   +  + E LK ++  LK S+  +  ++++  +E ++ +   
Sbjct: 689 GIAAGTRRIEAVTGIEAYKWVNEKAELLKHISGKLKCSEKEITIKLDQQSKEIKEKEKEI 748

Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              K +    +++        +  +N +++ +++VD + L+ + + ++ K+ + + +L  
Sbjct: 749 TNLKSKFASMEINDIINSVKDVKGINVVTYALTDVDGEALRGLCEKVRDKVNNSLTLLTS 808

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K     +   E +    +   + + +A +LGGGGG GRP MAQ+GG    K   A+
Sbjct: 809 SIDGKVVICAMADKEAVSKGAHCGKVIKEAATILGGGGG-GRPDMAQAGGKLPEKISDAL 867

Query: 890 AGVASFLK 897
             V   ++
Sbjct: 868 DSVYKIVE 875


>gi|256818974|ref|YP_003140253.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256580557|gb|ACU91692.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 877

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/924 (35%), Positives = 490/924 (53%), Gaps = 76/924 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP Y+ V
Sbjct: 1   MTSQEIREQFLKFFESKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++  E        EA+ +WK+   ++ + I+     DNFW M + GPCGPC+
Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAYDIWKE--RIAENHILLGNKKDNFWEMGDQGPCGPCT 178

Query: 174 EIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI      D+ +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDEEKAKVPGRDLVNNDYPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLR 280
            ER+  VLQ+K +NYD D+F  LI   E++T  +Y   + V           RVI DH+R
Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTAEQEQVNIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F I DG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG  +PE
Sbjct: 299 AVAFAITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +    + L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQN-SPGKQLSGGKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +GL   D  SF + L++Q+ R+RA +           W  L++     +FIG
Sbjct: 418 LTALILSEKGLTM-DEASFEEQLQKQKERSRAAAQ-----IKADDWVILRDD-DEEEFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + R+                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H +  E             +   +
Sbjct: 504 FYPEGGGQVGDKGTLQSANGELIYILDTKKENNLIIHIS--EHLPTNLNDPFKAEVHSIS 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  ELK +E  V
Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLV 621

Query: 640 NDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+     +  + A+ SGA AL G KY DRVR++          S  LCGGTH
Sbjct: 622 NRRIFEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRMIQFG------DSKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  +   Q++ ++ +   LK +Q  V  
Sbjct: 676 VKNTGDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLKNAQDPV-K 734

Query: 759 RVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMD 814
            +  + EE   L  +L   +++    ++     +  +VN +  ++ +VD++   LK +  
Sbjct: 735 AIRHLQEENAALHKELEQLRKEQAKQLKTSIKAEFTEVNGVQCLVKQVDAEVATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRP 872
            L  ++++  I      +E KA +L  + +DL      +A  + R   K + GGGG G+P
Sbjct: 795 ELGNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYIHGGGG-GQP 853

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
             A +GG N     +A++ V  +L
Sbjct: 854 FFATAGGKNPGGITEALSKVKDYL 877


>gi|205830481|sp|Q3AVV3|SYA_SYNS9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 890

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/904 (36%), Positives = 501/904 (55%), Gaps = 53/904 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR+ FL F+++ GH+++ S+SLIP  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 16  TGAEIRSAFLRFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KHLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ+ +  +     L   +IDTG+GLERMA +LQ+  N
Sbjct: 191 L-GDEGIDLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+    G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P ++ +  A    +  A+P +++ + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL    K + ++G  AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 370 ETLERGEKLLSEVLD--SKPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           +A+E+QR RA+A ++ +     + I   +     AT F GY  L                
Sbjct: 427 EAMEQQRQRAKAAAVSIDLTLQDAIDQ-VVATQKATAFQGYQRLE--------------- 470

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V+A+V  GE    A +G  V++V + TPFY E GGQ+GD G   G  +
Sbjct: 471 --------QPSCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  
Sbjct: 523 IVAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + +T+ +L  IE  +N  IA+   ++   M  + A
Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 641

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV ES + AG
Sbjct: 642 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKR 777
           IRRIEA+ G     +L  ++  +K L    K   G +V RV  + +E +     LI A+ 
Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756

Query: 778 KLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           +L +        K   +     +   +  VD   L+    +L  ++  G  +++G   + 
Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 816

Query: 834 ---KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    +D+   +  A       AK+ GGGGG GRP++AQ+GG +G     A+
Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGG-GRPNLAQAGGRDGAALAGAL 875

Query: 890 AGVA 893
               
Sbjct: 876 ETAR 879


>gi|254391331|ref|ZP_05006535.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197705022|gb|EDY50834.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 869

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 493/891 (55%), Gaps = 61/891 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ KP +  
Sbjct: 1   MMESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLINAGMVPFKPYFLGETKPPFPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT     
Sbjct: 60  ATSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVED 115

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L+  +L+ITVY +D+EA ++W+ + G+ A++I R+   DNFWSM   GPCGPCSEI
Sbjct: 116 GGYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMG 229
            +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +        LP  +IDTG+G
Sbjct: 176 NYDRGPAF-GAEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ D  + ++  + ++TG++Y  ++   V+ RVI DH+R+S  LI 
Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRRIMRRA+   RLLG T P++  L+  +   MG  YPEL+  +  I
Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    +E+ RF KTL+ G  +L+G ++        +L GD AF L+DT G P+D+  +I 
Sbjct: 355 EAVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL+ +D   F + ++EQR++A+A +    +G  +   +  + +  GAT+F GY    
Sbjct: 415 AEQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGYAATE 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
           G                        S +  ++  G     A  G +VEVV D+TPFYAE 
Sbjct: 474 G-----------------------ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEG 510

Query: 525 GGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +  G  +++ DVQ+   G+ VH   V+ G +    S    ID + RR +
Sbjct: 511 GGQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAI 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL H AL   LG   +Q GS  +P   RFD      +  + L  +E  +N+++
Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVL 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T 
Sbjct: 631 SRELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTA 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ ESSI +G+RRIEA+ G  A + L  +   +  L   +K     +  ++  +
Sbjct: 686 QLGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKISGM 745

Query: 764 WEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817
             + +  +    K + +               I  V  +S  + +   + +L+ ++  ++
Sbjct: 746 LAKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRRLVLDVR 805

Query: 818 KKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            +I      ++ L  ++  +  +V+            A DL R +AK LGG
Sbjct: 806 GRIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLRAGDLVRTAAKTLGG 856


>gi|195115683|ref|XP_002002386.1| GI12987 [Drosophila mojavensis]
 gi|193912961|gb|EDW11828.1| GI12987 [Drosophila mojavensis]
          Length = 967

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/971 (31%), Positives = 476/971 (49%), Gaps = 88/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 5   TAKEVRDAYLNFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEMSK 64

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT  
Sbjct: 65  WVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTDR 124

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            +L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETGPC
Sbjct: 125 LNLPKDRLYVTYFGGDAANGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID GMG
Sbjct: 184 GPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280
            ER+ +V+Q K +NYD DLF  L  A +  T         G        + +RV+ DH R
Sbjct: 243 FERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLADHAR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 303 TITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVTTVVELLGDAFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPL 398
           + +    I + +  E+++F KTL RG  LL+  +  LG D + + GDVA++LYDT+G P+
Sbjct: 363 VKKDPQHIMDIINEEEQQFLKTLSRGRNLLNRTIEKLGADQKTIPGDVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   + L  ID+  ++ A    +  +   S G G+   ++I   +   +  ++  
Sbjct: 423 DLTQLMAEEKSL-QIDMDGYDAA----KHNSYILSQGKGASKIDEINLDV---HAISELQ 474

Query: 459 GYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +   +   K        ++      +  +S + A+  + + V+E  SGQK  +V D+
Sbjct: 475 EKGVPPTNDSFKYIYEAESNERDSAYKFSDCTSKIVALRYENKFVQEITSGQKAGIVLDK 534

Query: 518 TPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           T FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     + L I
Sbjct: 535 TNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDEVQLHI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   
Sbjct: 594 DVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVAKT 653

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEY 683
           E    D++ + +P+  +      A    G  ++    Y D VRV+S            + 
Sbjct: 654 EQLTRDMVYKEMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLESQPDS 713

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   L   +   K
Sbjct: 714 EAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEGFEK 773

Query: 744 SLASFLKVSQGN--------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVEDLS 787
            +++     + +         V ++ E+ E+         +K ++ +  + L+  ++D  
Sbjct: 774 EISTLKATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDDKE 833

Query: 788 CHKIADVNFMS---------------HIISEVDS----KELKSVMDALQKKIQSGIIMLV 828
               A V+                   ++ ++++    K L + +  ++ ++     M V
Sbjct: 834 RALRAAVSVTVVEQAKALCEANPKANVLVQQLEAYNNTKALDAALKQVRSQLPDAAAMFV 893

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + KK   L  V +  +++   A +  +  + VL GG GGG+P  AQ+ G N  + D
Sbjct: 894 SVDADSKKVFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFERVD 952

Query: 887 QAIAGVASFLK 897
           + +   + F +
Sbjct: 953 EIVQLASKFAQ 963


>gi|312132175|ref|YP_003999515.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
 gi|311908721|gb|ADQ19162.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132]
          Length = 887

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/929 (35%), Positives = 499/929 (53%), Gaps = 79/929 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+K GH ++PS+ L+  NDPTLMF NSGM  FK+ F G   P  + +
Sbjct: 1   MTSHEIRKAFLDFFEKRGHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGNPPSKRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ A+  +W+LLT+ + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGFDTYHHTMFEMLGNWSFGDYFKKEALAWSWELLTEVYKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + R+Y++V++         D+EAF +WK I G   ++II     DNFW M + GPCGPCS
Sbjct: 121 KDRIYVSVFEGNPSEGVPFDQEAFDIWKSIIG-DENRIILGNKKDNFWEMGDIGPCGPCS 179

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        G    +++  + +EIWN VFMQ+E++       LP+  +DTGMG
Sbjct: 180 EIHIDLRDQEEVDQISGKELVNKDHPQVVEIWNNVFMQYERKADGTLIPLPEKHVDTGMG 239

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------IVNHRVIVDHLRS 281
            ER+   +Q K +NYD DLF++ IQ  EQ++G KY  N          V  RVI DHLR+
Sbjct: 240 FERLCMAIQGKKSNYDTDLFQNTIQVIEQLSGFKYGVNGTLSSDNYVDVAMRVIADHLRA 299

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF I+DG LP+N   GYV+RRI+RRA+ Y    L + EP M  L+P L  +    +PEL
Sbjct: 300 VSFAISDGQLPSNAKAGYVIRRILRRALRYGYSYLNFREPFMCKLVPVLAKQFADVFPEL 359

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
                 + + +  E++ F +TL++GL  LD +      +++L+G+  F+L DT G P+D+
Sbjct: 360 QAQVDFVSKVVEEEEKTFLRTLEQGLKRLDVLFKEDKGEKLLSGETVFELSDTFGFPVDL 419

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
              I   +G  GID   + +ALEEQ++R+R  +    +   E           A +F+GY
Sbjct: 420 TALIAREKGF-GIDEEGYKKALEEQKARSRKDAQKEAADWVE------LGDTDAVEFLGY 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L  +  + + R                            + +   GQ++ VV DQTPF
Sbjct: 473 DQLSSTALLTKYR----------------------------ISKTKQGQEIHVVLDQTPF 504

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-----LRTEMSLVLTI 575
           YAE GGQ+GDTG        L ++D +K+   +F+H    +            + +   +
Sbjct: 505 YAEMGGQVGDTGTITIGDQTLHVSDTRKE-NDLFIHVVKDKNAAEILSGYEEPVEVFAQV 563

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           + + R+ +  NH+ATHL+  AL  +LGSH+ Q GS    +  RFD +H   +T  ELK +
Sbjct: 564 NAERRKNIEKNHTATHLMLAALKEVLGSHIVQRGSYQNDELTRFDFSHFAKVTDEELKKV 623

Query: 636 EDNVNDIIAQNL-PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           ED VN+ I  N+     R +  ++A+  GA A  G KY D VRV++ +      +S  LC
Sbjct: 624 EDIVNEKIRANILKGEKRNVPFQEAVDMGATATFGEKYGDFVRVITFDPN----YSIELC 679

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV+STGEI L   +SE S+ AG+RR+EA+TG +A   +  Q + ++ L   LK +  
Sbjct: 680 GGTHVNSTGEIGLFRFISEGSVSAGVRRVEAVTGVKALELMREQAQLIQELKDLLKAT-- 737

Query: 755 NVVGRVEEIWEEYRKLQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           +++  VE +  E  + Q       +A  +            +  +N ++  ++   +  L
Sbjct: 738 DLLKAVETLKAENAQFQKRIEMFENASIQAAKVALLSKVENVNGMNVVAARVNVPHADGL 797

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGG 867
           K++   L++ I   +++L  +  + K S+ I++ E+++     NA  + R  AK++ GG 
Sbjct: 798 KTLAFGLKQGIGKPVVILGAVIND-KPSLAILIDENVVKEKNLNAGTIIREVAKLMKGG- 855

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GGG+PH A +GG +    D AI    + +
Sbjct: 856 GGGQPHFATAGGSDVKGLDDAIEAAKASI 884


>gi|109148542|ref|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|115502460|sp|P49588|SYAC_HUMAN RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; AltName:
           Full=Renal carcinoma antigen NY-REN-42
 gi|15079238|gb|AAH11451.1| Alanyl-tRNA synthetase [Homo sapiens]
 gi|119572224|gb|EAW51839.1| alanyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|123981462|gb|ABM82560.1| alanyl-tRNA synthetase [synthetic construct]
 gi|123996297|gb|ABM85750.1| alanyl-tRNA synthetase [synthetic construct]
          Length = 968

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/971 (32%), Positives = 481/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +  +        +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 476 RGLEVTDDSPKYNYHL--DSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLKVGDQVWL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I     V T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            K L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL 
Sbjct: 771 KKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|220912769|ref|YP_002488078.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|219859647|gb|ACL39989.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 898

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/927 (35%), Positives = 494/927 (53%), Gaps = 65/927 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+  Y  
Sbjct: 5   MKS-QEITKRWVDFFVSKGHTAVPSASLVSS-DPSLLFTVAGMVPFIPYLTAREEAPYTR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT     
Sbjct: 63  ATSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKYAWELLTTSVDD 118

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L    L++TVY+ED+EA +LW K +G+ A++I ++   DN+W+  + GP GPCSEI
Sbjct: 119 GGYGLPPELLWVTVYEEDDEAKELWLKNTGVPAERIQKMGKADNYWNTGQPGPAGPCSEI 178

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           ++D+G    G   G   +  RYIEIWNLVFMQ++  N + +        LPK +IDTG+G
Sbjct: 179 YYDRGPAY-GIEGGPLADETRYIEIWNLVFMQYQIDNVRSKDDFDIVGELPKKNIDTGLG 237

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           +ER+A +LQ   N Y+ D  + +I  + +++G +Y            + V  RV+ DH+R
Sbjct: 238 MERLAMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETPDDPHHTDDVRMRVVGDHIR 297

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  LI+DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +
Sbjct: 298 SALMLISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPDLLPASRDAMKGVYPVV 357

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLD 399
                 I     +E++ F +T+  G   L+  +      ++ L+G+ AF L+DT+G P+D
Sbjct: 358 ETDFARISRIAYAEEKAFLRTIASGTARLEEAVKESKAANKQLSGEDAFALHDTYGFPID 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    GL  +D  +F   ++EQR RA+A + G   G  +   F      G T F G
Sbjct: 418 LTLEMAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQDILAQGETVFTG 476

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L G                        S V+ ++  G  V++A +G ++E+V  +TP
Sbjct: 477 YTELDG-----------------------ESRVRGLLTGGRPVQQAATGDEIELVLSETP 513

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + 
Sbjct: 514 FYAEAGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVRAAVDRER 573

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+ TH++H AL  ILG   +Q GS      LRFD    + +++A    IE+  
Sbjct: 574 RHAAEQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVS 633

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V T++M   +A A GA AL G  Y   VRVV ++    G  S  LCGGTHV
Sbjct: 634 NLAIRNNYAVETKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHV 689

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           ++T  I  L ++ E S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R
Sbjct: 690 ANTSLIGSLSLLGEQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTDLLKVPSGQLADR 749

Query: 760 VEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVD-SKELKSVM 813
           +     + +  +       K +L  +   L  S    A V+ ++H    V  + +++ + 
Sbjct: 750 ISATLAKLKATEKELDRLRKEQLAASAAQLVNSAKDAAGVSLIAHDAGSVSGADDIRGLA 809

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871
             L+ ++ S    +          +++V T +        A  L RL+A VLGGGGG G+
Sbjct: 810 LDLRNRLGSAPAAVAVAGVANDRPLVLVATNEAARNAGVKAGALVRLAAGVLGGGGG-GK 868

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
             +AQ GG +  K   A+A +   +++
Sbjct: 869 DDVAQGGGTDAGKVGAALAAILDAVER 895


>gi|257892474|ref|ZP_05672127.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|257828853|gb|EEV55460.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408]
          Length = 819

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/854 (38%), Positives = 478/854 (55%), Gaps = 60/854 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D EA ++W +  GL  D II     DNFW +   GPCGP +EIF+D+G
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLPLDHII--DVEDNFWDIGA-GPCGPDTEIFYDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E          E     E ERY+EIWNLVF +F  +       LP  +IDTGMGLERM +
Sbjct: 178 EAYNDLAEDDPENYPGGENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMGLERMVS 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292
           ++Q+ + N++ DLF  +I A E+++  +KY  N    ++++VI DH+R+ SF I DG LP
Sbjct: 238 IVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAIGDGALP 297

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ + + LG  +  +  L+P +   M S YPE++Q K  IE+ +R
Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEFIEKVIR 357

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           +E+ERF +T++ GL +L+ V+  +  +    L G   FKLYDT+G P+++ +++    GL
Sbjct: 358 TEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEVAEDEGL 417

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F + ++ QR RAR+      S   +     L +    ++FIGY          
Sbjct: 418 K-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL--LTDIKVESKFIGYTEQESD---- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              S +  IV+   ++ E   G+  +++FDQTPFYAE GGQ+ D
Sbjct: 471 -------------------SQLLVIVKGESLLNEVAEGE-AQMIFDQTPFYAEMGGQVAD 510

Query: 531 TGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            G  + +   +   +TDVQK   G F+H   V +  +    +  L ID   R ++  NH+
Sbjct: 511 QGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRNRIIKNHT 569

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLLH AL  +LG H +Q GS + P  LRFD TH   ITS EL  +E  VN+ I + +P
Sbjct: 570 ATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNEKIWEAIP 629

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V T   + + A   GA AL G KY   VRVV++     G  S  LCGGTHV++T  I + 
Sbjct: 630 VETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVANTENIGIF 684

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767
            IVSES I AG+RRIEA+T + A   L  ++++LK +A+ +K  Q   VV + E++ ++ 
Sbjct: 685 KIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKAEQLQQQV 744

Query: 768 RKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           R+LQ  + +   +L  +           I     ++  +   D  +L+ + D  ++K  S
Sbjct: 745 RELQKENEQLASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLRQLADQWKQKNIS 804

Query: 823 GIIMLVGISKEKKA 836
            I++L    KEK  
Sbjct: 805 DILVLQTNKKEKSV 818


>gi|126663290|ref|ZP_01734288.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria
           bacterium BAL38]
 gi|126624948|gb|EAZ95638.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria
           bacterium BAL38]
          Length = 878

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/928 (35%), Positives = 490/928 (52%), Gaps = 81/928 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF+ NGH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    
Sbjct: 1   MKS-QDIRKQFLQFFESNGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGNPKSPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW LLT+ + +
Sbjct: 60  IADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWQLLTEVYKI 119

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY++V++         D+EA+ +WK++  +S D+II     DNFW M + GPCGPC
Sbjct: 120 PKENLYVSVFEGNPDENVPFDQEAWDIWKEL--ISEDRIILGNKKDNFWEMGDQGPCGPC 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D      + +  G    + +  + +EIWN VFM+F ++       LP   +DTGM
Sbjct: 178 SEIHVDLRTEAEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVD 277
           G ER+   LQ KT+NYD D+F  LI+  EQ+TG+KY  N +           +  RVIVD
Sbjct: 238 GFERLCMALQGKTSNYDTDVFTPLIEKVEQITGLKYTSNEVKNISEEQNKTNIAIRVIVD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG  
Sbjct: 298 HVRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFINKLVEVLANQMGEF 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PE+   + L+   +R E+  F +TL++GL LL+ V++     E+ +G  AF+LYDT G 
Sbjct: 358 FPEIKSQQQLVTNVIREEEASFLRTLEQGLQLLENVMAETSGKEV-SGAKAFELYDTFGF 416

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   IL  +G   +D   FN A++EQ++R+RA S          I  +++       
Sbjct: 417 PIDLTALILREKGY-DLDEAGFNVAMQEQKARSRAASEVSTEDWNVLIPGNVE------T 469

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GYD       +   RK                           V+    G   ++V D
Sbjct: 470 FVGYDQTANEVKITRIRK---------------------------VDSKKDGVLYQIVLD 502

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFY E GGQ+GD G  +     + I D +K+   + +H A  ++     E   V  ++
Sbjct: 503 NTPFYPEGGGQVGDKGTLVSANETIDIIDTKKE-NNLILHFA--KQLPENIEAGFVAKVN 559

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R   S NHSATHL+H AL TILG+HV Q GS + P+ LRFD +H   ++  EL+ +E
Sbjct: 560 TDLRTSTSKNHSATHLMHLALRTILGTHVEQKGSLVNPNYLRFDFSHFSKVSDDELRQVE 619

Query: 637 DNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
            +VN  I   L  V  R +  ++A+  GA AL G KY D VR++          S  LCG
Sbjct: 620 ASVNAQIEAQLQLVEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFG------DSKELCG 673

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV +T EI    I+SE ++ AGIRRIEAITG   +     Q+  L  +   LK +  +
Sbjct: 674 GIHVKNTAEIWHFKIISEGAVAAGIRRIEAITGDAVKDFYTSQENTLAEIKEVLK-NPQD 732

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVD--SKELKS 811
           V+  V  + ++  KL+    +   +    +++       +VN +  +  +VD      K 
Sbjct: 733 VLKSVASLQDDNAKLKKQVEQLVKEKIEGLKNSLVADFQEVNGIHFLAKQVDLSMSSTKD 792

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869
           +  A+     +  + L  I ++   ++   ++++L+     NA ++ R   K++  G GG
Sbjct: 793 LAQAIGTSKPNAFVFLASI-EDNAPNIHCYISKELVAEKGLNAGNVIRELGKLI-DGNGG 850

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G+P  A   G N     +A+  V  F+K
Sbjct: 851 GQPFFASGKGKNVGGIKEALEKVVDFVK 878


>gi|330466938|ref|YP_004404681.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809909|gb|AEB44081.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 892

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/930 (35%), Positives = 497/930 (53%), Gaps = 72/930 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P +   
Sbjct: 1   MKTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQSPPFPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK+ AI  AWDL TK     
Sbjct: 61  VSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDGAIPFAWDLATKSVEAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+ +W   +G+ A++I+R    DNFWSM   GP GPCSE++
Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWLH-TGVPAERIVRRGKKDNFWSMGIPGPAGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQ+E  + + +        LPK +IDTGMGL
Sbjct: 176 YDRGPEY-GLEGGPEVDEDRYLEFWNLVFMQYEIADVRSKEEFRIVGELPKKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + +++ + ++TG +Y             + V  RV+ DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILERAAELTGKRYGAQSGQAANQSHPDDVRLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  +  LLP     M  +YPEL
Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
                 I     +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 ATDFDRISAYAYAEEDAFLATLRAGTTILDTAITETKSAGKPALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QR+RA+A +    +G T+   + S+ +  G   F
Sbjct: 415 DLTLEIAAEQGL-DVDQEGFRRLMADQRARAKADAQARKTGHTDLSAYRSVLDAGGPVTF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY                             S V+A++        AV G  VE+V D 
Sbjct: 474 TGY-----------------------TETARESTVRAVLGTDGPRAAAVEGDMVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDLGMITVGGGQVEVLDVQQPVPGLIVHRARVIRGEVRAGETGYAEIDT 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD   +  +  + L+ +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTATGVAPSVLRDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+++  +L V   + + ++A   GA AL G KY D+VRVV V     G ++  LCGGT
Sbjct: 631 QVNEVLLADLEVHAFVTSLDEARRIGAMALFGEKYGDQVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS +G++ L+ I+SESSI +G+RR+EA+ G  A + L  +   +  LA   +V    V 
Sbjct: 686 HVSRSGQLGLVKILSESSIGSGVRRVEALVGMDAFNFLAREHLLVSRLAELYRVPSEQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVED--LSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + QL +        +  DV  ++++           ++++
Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAAAFAAQAKDVRGVAYVGIEAPEGAAGNDVRT 805

Query: 812 VMDALQKKIQSGI--IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ +I +    ++ V      KAS+++ V      R   A DL + +      G G
Sbjct: 806 LAQEIRGRIDAARPGVVAVASRSNGKASLVVSVNPAARSRGLAANDLVKAAFS----GRG 861

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG P +AQ GG   ++    +  V   + +
Sbjct: 862 GGSPDLAQGGGLPESEVPTLLLTVEKAIAE 891


>gi|78214024|ref|YP_382803.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|123577380|sp|Q3AGN4|SYA_SYNSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78198483|gb|ABB36248.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 889

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/904 (36%), Positives = 495/904 (54%), Gaps = 53/904 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL F+ + GH+ + S+SLIP +DPT++ T +GM+PFK +F GQ++      T+ Q
Sbjct: 19  EIREAFLNFYAERGHKRMASASLIP-DDPTVLLTIAGMLPFKPVFLGQQERPAPRATSSQ 77

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+RAI+ AW+L T  + +D + L
Sbjct: 78  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQRAIEWAWELSTGVYGIDPKNL 133

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + G
Sbjct: 134 VVSVFREDDEAELIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-G 192

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY+
Sbjct: 193 DEDIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPNNYE 252

Query: 246 IDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   LIQA+  + G+ Y   N     + +VI DH R+ + LI DG+  +N GRGY+LR
Sbjct: 253 TDLIFPLIQAAADLAGVDYHQLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYILR 312

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF +TL
Sbjct: 313 RLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFLETL 372

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  VL+   K   ++G  AF+LYDT+G PL++ Q+I   +GLA +D+  F  A+
Sbjct: 373 ERGEKLLAEVLA--SKPTQISGAQAFELYDTYGFPLELTQEIAEEQGLA-VDLDGFEAAM 429

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RA+A ++ +     + I   + ++  AT F GY+ L                   
Sbjct: 430 EEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFEGYEALDH----------------- 471

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                 +S V+A+V  G     A +G  V+VV D TPFY E GGQ+GD G   G  + ++
Sbjct: 472 ------ASCVQALVVNGGPSTTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLAGSDLIVR 525

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I  V +  + +FVH   VERG L    ++   +D   RR+   NH+ATHLL  AL  ++ 
Sbjct: 526 IESVSRSRD-VFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQVVD 584

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             + Q GS +  D LRFD      +T  +L+ +E  +N  I +   +  + M  + A A+
Sbjct: 585 PGIGQAGSLVDFDRLRFDFHCPTAVTPDQLQQVETLINGWINEAHALQVQEMAIDQAKAA 644

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ES + AGIRR
Sbjct: 645 GAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVTNTAEIGLFKIVAESGVAAGIRR 699

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKR 777
           IEA+ G    ++L  +D  +K L    K     +V RV  + EE +              
Sbjct: 700 IEAVAGPAVLAYLNERDVVVKQLGDRFKAQPAEIVDRVAALQEELKATGKALAAAQAELA 759

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE---- 833
             +          + D   +   +  VD   L+    +L  ++  G  +++G   +    
Sbjct: 760 VAKAGALAAKAEAVGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDPGDM 819

Query: 834 KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K  ++    + +   +  A       AK  GGGGG GRP++AQ+GG +G     A+   
Sbjct: 820 GKVILVAAFGQQVIAAKLQAGKFIGGIAKQCGGGGG-GRPNLAQAGGRDGAALPGALDAA 878

Query: 893 ASFL 896
            + L
Sbjct: 879 QAEL 882


>gi|62897207|dbj|BAD96544.1| alanyl-tRNA synthetase variant [Homo sapiens]
          Length = 968

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/971 (32%), Positives = 481/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +  +        +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 476 RGLEVTDDSPKYNYHL--DSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLKVGDQVWL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I     V T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            K L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL 
Sbjct: 771 KKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGATAKALNEALKLFKMHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|210633873|ref|ZP_03297888.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279]
 gi|210159042|gb|EEA90013.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279]
          Length = 884

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/893 (37%), Positives = 502/893 (56%), Gaps = 46/893 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ +L FF+  G +L PSSSL+P +DP+L+  N+GM  FK  + G++       
Sbjct: 8   MTTAEIRSAYLNFFESKGCKLYPSSSLVP-DDPSLLLANAGMNQFKEFYQGKKVMKEIGA 66

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKCVR     ND+D +G   RH +FFEMLGNF+FGG  K +A   A++L+T+ F L 
Sbjct: 67  CSCQKCVRT----NDIDIIGADGRHASFFEMLGNFAFGGVTKGQACAWAYELITEVFKLP 122

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY TV+ ED+E   +W+ + G+  D I R+  +DNFW+   TGPCGPCSEI+FD GE
Sbjct: 123 KDRLYFTVFTEDDETEAVWRSL-GVEPDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGE 181

Query: 182 CIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
            +  G        + +R++E WNLVF QF++Q       LP  ++DTGMGLERMA ++Q 
Sbjct: 182 EVGCGCDTCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQH 241

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV----NHRVIVDHLRSSSFLIADGILPANE 295
           K++ +D D+ + LI+  E ++G  Y  ++      + R+I DH RS +FLI+DG+LP NE
Sbjct: 242 KSSFFDGDVMQSLIKLGEDISGKTYVDDDYTGASRSLRIIADHARSVNFLISDGVLPGNE 301

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RRA+ + RLLG  +  +   + A+   MG AYP L++   L++  + +E+
Sbjct: 302 GRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPSLLENVGLVKGIVEAEE 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL+ G V LD  LS L + E L G  AF L+DT G P+D+  +I    G   +DI
Sbjct: 362 ERFSTTLNNGRVYLDEQLSALAEGEQLPGSAAFMLHDTFGFPIDLTVEIAEGAG-HAVDI 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN  + EQ++RARA + G   G+   +W  L ++  AT+F+GYD              
Sbjct: 421 EGFNAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFVGYDNESIEG-------- 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V AIV  GE VE A +  +  VV D+TP YAE GGQ+GD G   
Sbjct: 473 --------------AHVLAIVVNGERVERAENAAEAAVVLDRTPLYAEMGGQMGDHGLID 518

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D  +  +++   K  G++VH   +  G L    ++    D   R  L  NH+ATHLL  
Sbjct: 519 TDDAQFFVSNTTAK-GGLYVHEGKLI-GALSEGDTVFAGYDLNRRGLLCRNHTATHLLDA 576

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I    PVVT++M 
Sbjct: 577 ALKEVLGDHVNQAGSLVSPENLRFDFTHFEAMTSEQIRAVEDLVNEQILAAQPVVTQVMG 636

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A ASGA AL G KY   VRVVS   E     S  LCGGTH  +T E+ L  IVSESS
Sbjct: 637 IDEAKASGAVALFGEKYGGVVRVVS-VGEGAEPFSRELCGGTHAKNTAELGLFKIVSESS 695

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
             + +RRIEA+T   A ++L  +    ++ A+ LK     V  RV  +  E R++     
Sbjct: 696 TGSNVRRIEAVTSTGAIAYLEERAALAETAAASLKCRVEEVPARVHALQAELREVNQKLK 755

Query: 776 KR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K         +     +   +     +   +S +++ +L++V D ++ K+ S    ++  
Sbjct: 756 KALTGGSSDAIASAIDAAVDMGGYQLVVAELSGLEAADLRNVWDTIRGKLSSACACVLAT 815

Query: 831 SKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             EK   A +     +     F+A ++ +  A ++  G GGGRP MAQ+GG N
Sbjct: 816 VTEKGTPALIAAATDDAAAAGFHAGNVIKQIAPLV-DGRGGGRPTMAQAGGKN 867


>gi|288924681|ref|ZP_06418618.1| tRNA ligase [Prevotella buccae D17]
 gi|315607688|ref|ZP_07882682.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|288338468|gb|EFC76817.1| tRNA ligase [Prevotella buccae D17]
 gi|315250624|gb|EFU30619.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 881

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/927 (35%), Positives = 500/927 (53%), Gaps = 81/927 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M   + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 1   MMTANEVRESYKKFFETKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     
Sbjct: 61  RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLH 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D+EA + W K   + AD II    +DNFW M +TGPCGP
Sbjct: 121 LNPEDLYVTVFEGSPEENLSRDDEAARFWGK--HVPADHIINGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D +       +PG    +++  + IEIWN+VFMQ+ ++       LP   IDTG
Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDH 278
           MG ER+  +LQ K +NYD D+F+ +I+  E++TG+KYE          N  V  RV+ DH
Sbjct: 239 MGFERLVRMLQGKHSNYDTDIFQPIIKEIERLTGLKYEDAHGDSRTQTNIDVAMRVVADH 298

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
           LR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+P L  EMG+AY
Sbjct: 299 LRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNRKEAFMYKLVPVLVQEMGAAY 358

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHG 395
           PEL   + LI   ++ E++ F +TLD+G+ LL+G +  L       L+G  AF+L+DT+G
Sbjct: 359 PELPAQQELIARVMKEEEDSFLRTLDKGINLLNGDMDELKAHGKTELDGAAAFRLFDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ + I    G   +D   F++ +E+Q++RAR  ++          W  +KE  G  
Sbjct: 419 FPLDLTELICRENGYT-VDGKGFDEEMEKQKARARNAAV-----VENGDWEVVKE--GEQ 470

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GYD       +   RKV  +K                                E+V 
Sbjct: 471 EFVGYDYTEYECHILRYRKVTQKKNTF----------------------------FELVL 502

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D TPFY E GGQ+GDTG  +     +++ D  K+     +H        +R +   +  +
Sbjct: 503 DHTPFYGEMGGQVGDTGVLVSADETVEVIDT-KRENNQSIHIVKQLPKDIRAD--FMACV 559

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R   + NH+ATHLL +AL  +LG HV Q GS ++ D LRFD +H + +T  EL+ +
Sbjct: 560 DIDKRDGSAANHTATHLLDYALKQVLGDHVEQKGSYVSADTLRFDFSHFQKVTDEELRQV 619

Query: 636 EDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E  VND+I Q+ P+        E+A A GA AL G KY D+VRVV          S   C
Sbjct: 620 ERIVNDMIRQDFPLDEHRDTPLEEAKALGAIALFGEKYGDKVRVVRFGP------SCEFC 673

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GG H  STG I    I+ ESS+ AGIRRIEA+TG+     +    + L  + +    +  
Sbjct: 674 GGIHAKSTGRIGFFKIIGESSVAAGIRRIEALTGKACEEAIYALQDTLTDVRALFN-NAK 732

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI--ISEVDSKELK 810
           ++ G V +  EE+  ++    K + Q    ++D    ++  +N +  +  + E++    K
Sbjct: 733 DLKGVVGKYIEEHDAMKKDIEKFRAQTVERLKDELVKRVKLMNGVQVVRAVIEMEPSAAK 792

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868
            ++  +++ +   ++ ++G    +K  + +++++D++     NA  + R +AK++ GG G
Sbjct: 793 DLVFKIREALPENLLCVIGSKAHEKPMLSVMLSDDMVKGHSLNAGQMIREAAKLIQGG-G 851

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASF 895
           GG+PH AQ+GG N +  + A+  V   
Sbjct: 852 GGQPHYAQAGGKNIDGLNAAVDKVIEL 878


>gi|301791808|ref|XP_002930871.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 968

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/971 (33%), Positives = 480/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGDDLIMLDI---YAIEELRE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +                 + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYH--SDSSGSYAFESTVATVMALRRDKMFVEEVCTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G LR    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVR-GGYVLHIGTI-YGSLRVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       +VSE +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
             SL+   + +K   V   +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KNSLSIMEAKVKAQTVPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+   ASF +
Sbjct: 950 EALQLAASFAQ 960


>gi|29840633|ref|NP_829739.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301683|sp|Q821R2|SYA_CHLCV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|29834983|gb|AAP05617.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 875

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/897 (37%), Positives = 501/897 (55%), Gaps = 46/897 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H ++PSS + P NDP+++FTN+GM  FK+IF  +E   Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRHHTIVPSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+L
Sbjct: 60  ATTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  R+Y TV+++D+EAF LW+K   L +++I R+T  DNFWSMAETGPCG CSE+ FD+G
Sbjct: 120 DPDRIYATVHEKDDEAFALWEK--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ ++L  
Sbjct: 178 EKFGTAASPLEDTEGERFLEYWNLVFMEFNRTAEGSLLALPNKHVDTGAGLERLVSILSG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ + LI  +EQ++G  Y  +  +    RVI DH RS SF IADG+LP N  R
Sbjct: 238 TNTVFEADVLRLLISKTEQLSGKTYHADEALGAAFRVIADHTRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+T+P +  ++P+L   MG AYPEL  +   I+E +  E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFTQPFLADIVPSLVDTMGEAYPELRLSLSQIQEVMTMEEEN 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           + K+L RG  LL  VL       I++G+ AFKL DT+GLPLD +  +        +D+ +
Sbjct: 358 YFKSLHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIALLAKDYDFT-VDMET 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q  EE + R+R + +     +T+ ++ SL      ++F+GY+ L    F         
Sbjct: 417 FYQLEEEAKERSRKN-IAKSHSSTDTVYDSLS-LGENSEFVGYNDLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++A+V  G+ V      +K  ++   TPFYAE GGQ+GD+G     
Sbjct: 466 --------------IEALVSNGKQVSSLKEKEKGALILKVTPFYAEKGGQIGDSGEIFCS 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       GI +HH  V +G L  + ++   ++   R+++  NH+  HLLH AL
Sbjct: 512 DGTFIVSHTTSPKAGIVIHHGEVSQGQLSQDQAVTAQVNCIRRKKIGNNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR     
Sbjct: 572 EVTLGDHIRQAGSYVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAMYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D + S       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++
Sbjct: 632 DVMNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHAEFTGDLGYFRILKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA+TG+ A +     +E L  +A  L+  +  ++ +++ + EE ++     ++
Sbjct: 686 ATGIRRIEAVTGREAEALAHQDNENLNEIALVLQSPRDQILNKLQNVLEERKEQAKQISE 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L    L      C ++ DV+++ H + E +S  L+   + L +KI   +I L    
Sbjct: 746 LENKLIHSLLDKLIDGCQQVDDVSYLIHHLPESESHRLQQYANCLHQKIPLRLISLWTTQ 805

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           K  K  +   +++DL+     A DL ++      GG  GG+   AQ    N  +AD 
Sbjct: 806 KNGKYIIFSRISDDLVKQGLQAKDLLKIVLTPC-GGRWGGKDIFAQGSADNLPQADA 861


>gi|34540951|ref|NP_905430.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|41018164|sp|Q7MV54|SYA_PORGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|34397266|gb|AAQ66329.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 876

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/916 (35%), Positives = 483/916 (52%), Gaps = 72/916 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR +F  FF   GH+++PS+ ++   DPTLMFTN+GM  FK+I  G  +  Y  
Sbjct: 1   MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ L     L
Sbjct: 61  VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY TV++         D EA   W +   L  ++II    +DNFW M +TGPCGPC
Sbjct: 121 DPQRLYATVFEGNPEEGLDRDNEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI      D+      GL   ++   + IEIWNLVFMQ+ ++       LP   IDTGM
Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286
           G ER+   LQ KT+NYD D+F+ LI+    +TG+ Y  +  + +  RV+ DH+R+ +F I
Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIRTLATMTGIGYGEDSTSDIAMRVVADHIRTIAFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L   MG AYPEL   + 
Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLHCREAFMYRLLPTLIDTMGDAYPELQAQRE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E+E F +TL+ G+ LL+  ++        +L+G  AF+LYDT G PLD+   
Sbjct: 359 LISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLDLTAL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +D   F+  +++Q+ RAR       +      W  L+E  G ++F GYD  
Sbjct: 419 ILSENGMT-VDESGFDTEMQKQKERARNA-----AAVEAGDWVVLRE--GESKFSGYDFT 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   R+V  +                              +  +VV   TPFYAE
Sbjct: 471 ETETEILRYRQVKQKNK----------------------------EYFQVVLSDTPFYAE 502

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GD+G  I +          K+   + VH  ++++    T  + V  I+   RRQ 
Sbjct: 503 MGGQVGDSGQLIDESGVAYDIFDTKRENNLSVH--LMKKLPESTTDTFVARINQDKRRQA 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   ++  E++ +E+ V++ I
Sbjct: 561 EANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEELVSERI 620

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +        +   +A A GA AL G KY + VRV+          S  LCGGTH+ ST
Sbjct: 621 RADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYGS------SVELCGGTHIPST 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I    IV+ESSI +G+RRIEA+TG  A   +  +++ L ++      +  N++  +++
Sbjct: 675 GMIGAFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFNNNP-NLIKSIKK 733

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQK 818
           + EE   L+   A  K +  ++        DV      +      ++++  K +   +  
Sbjct: 734 MLEEDASLKKQIADMKHERMLKFKKSLLEQDVRRRGIRLFLFQEIMEAETAKDIAFQIAG 793

Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++Q   +++ G ++   K ++ +++++DL +   +A  L R +AK + GG GGG+PH A 
Sbjct: 794 ELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHIQGG-GGGQPHFAT 852

Query: 877 SGGPNGNKADQAIAGV 892
           +GG N      AI  +
Sbjct: 853 AGGKNPKGLPAAIQQI 868


>gi|327402220|ref|YP_004343058.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
 gi|327317728|gb|AEA42220.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823]
          Length = 871

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/930 (37%), Positives = 509/930 (54%), Gaps = 95/930 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             V  IR  F +FF   GH+++PS+ ++  NDPTLMFTN+GM  FK+ F G   P  + V
Sbjct: 1   MTVHEIRKQFFDFFASKGHQIVPSAPMVVKNDPTLMFTNAGMNQFKDFFLGNAVPKNRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + + 
Sbjct: 61  ANSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKEEAITWAWELLTEVYKIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++ DE        E++ +WK+   ++ D+II  +  DNFW M +TGPCGPC+
Sbjct: 121 KDRLYVTVFEGDEKDGVPKDQESYDIWKRF--IAEDRIIMASKKDNFWEMGDTGPCGPCT 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +E+  + IEIWN VFMQF ++       LP   +DTGMG
Sbjct: 179 EIHVDNRPATERAKEDGKKYVNEDHPQVIEIWNNVFMQFNRKADGSLEPLPATHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
           LER+A  LQ+KT+NYDIDLF+ LIQ  EQV+G KY  N    +  RVI DH+R+ +F IA
Sbjct: 239 LERLAMTLQDKTSNYDIDLFQTLIQHMEQVSGKKYGENETTDIALRVIADHVRAIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L   L   MG  + ELI+   L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAVRYGYQTLGLKEPFLSGLSVVLGKVMGDPFSELIKQGEL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           +E+ +R E+  F +TL++GL  +D +++   K  + IL G   F+LYDT G P+D+   I
Sbjct: 359 VEKVIREEELSFFRTLEQGLKRMDNLIAQARKTRETILQGPAVFELYDTFGFPIDLTSLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                L  +D   F+  L++Q++R+RA +      + E   + + +K    +F+GYD L 
Sbjct: 419 ARENKL-LVDEDGFDTELQKQKARSRAAT------SIETDDWVVLKKDSEEEFVGYDHLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  + + RKV  ++                                ++VF+ TPFYAE 
Sbjct: 472 TTVEIVKYRKVKQKQRSF----------------------------YQLVFNLTPFYAEG 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG        L I D +K+  G+ VH  +V+    + +      ++ ++RR  +
Sbjct: 504 GGQVGDTGTISNANESLTIFDTKKE-NGLIVH--LVDELPEKIDGQFTARVNEESRRLSA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLHHAL T+LG+HV Q GS + P+ LRFD +H   +T  E+  IE  V D I 
Sbjct: 561 SNHSATHLLHHALRTVLGAHVEQKGSLVNPNYLRFDFSHFSKVTDEEMAKIEAIVIDGIR 620

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           QNL +   R +  + A   GA AL G KY D VRV+          S  LCGGTHV +TG
Sbjct: 621 QNLSLEESRNVPIDAAQEMGAMALFGEKYGDTVRVIKFG------DSIELCGGTHVQNTG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I SES++ AGIRRIEAIT      +   Q+ KLKS+   LK +  +V   VE++
Sbjct: 675 QIGLFKIQSESAVAAGIRRIEAITNVAVEGYYADQESKLKSVNELLK-NPKDVSKAVEDL 733

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQK 818
             +  +LQ       K   +L   DL    I   D +++  +I ++++  +K ++  L+ 
Sbjct: 734 ISKNNQLQKQVENFKKEHAKLVKADLKTKIISKGDFSYLDALI-DLNAGSVKDILFQLKG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGG 866
           ++ + +  ++G  +E K ++ ++V E L+    +NA +L +  A ++             
Sbjct: 793 EVPN-LFAVIGSKEEDKCAISVLVDESLVSSKGWNAGNLVKSVASLIQGGGGGQAFFA-- 849

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                     +GG N N   +AI  V   +
Sbjct: 850 ---------TAGGKNANGLKEAIEKVKQEI 870


>gi|288927362|ref|ZP_06421209.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330196|gb|EFC68780.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 872

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/918 (35%), Positives = 488/918 (53%), Gaps = 73/918 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F +FF+  GH++  S+ ++  +DPTLMFTN+GM  +K+I  G   P  +  
Sbjct: 1   MTANEIRDSFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK  AI  AW+ L     L+
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHLN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D+EA + W K   L AD II    +DNFW M ETGPCGPCS
Sbjct: 121 PQDLYVTVFEGSEEEGIPRDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +++  + IEIWN+VFMQF +++      LP   IDTGMG
Sbjct: 179 EIHLDSRSAKEKAEVPGASLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ KT+NYD D+F+ +IQ   Q++G+KY  +    V  RVI DHLR+ +F IA
Sbjct: 239 FERLVRSLQGKTSNYDTDVFQPVIQEISQLSGLKYGEDEKVDVAMRVIADHLRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N   GYV+RRI+RRA+ YA   LG     M  LLP    EMG AYPEL   + L
Sbjct: 299 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL++G+ +L+  +  L       L+G  AF+L+DT+G PLD+ + I
Sbjct: 359 IGRVMKEEEDAFLRTLEKGISMLNDEMERLKAEGKTTLDGTQAFRLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F+  +++Q+ RAR       +      W  L+E  G   F+GYD   
Sbjct: 419 CRENGL-QVDAAQFDVEMQKQKERARNA-----AAVENSDWVVLRE--GEQNFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +K                                E+V D TPFY E 
Sbjct: 471 YECRILRYRQVTQKKNTY----------------------------FELVLDNTPFYGEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  +     + I D  K+     +H         + +   +  +D   R   +
Sbjct: 503 GGQVGDCGVLVNGEETVDIIDT-KRENNQSIHIVKALPKDPKAD--FMACVDTDKREASA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL +AL  +LG HV Q GS + PD LRFD +H + +T  EL+ +E  VND+I 
Sbjct: 560 ANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLIR 619

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           Q+LP+        E+A A GA AL G KY D VRVV          S   CGG H  STG
Sbjct: 620 QDLPLDEHRNTPLEEAKAMGAVALFGEKYGDTVRVVRFGP------SCEFCGGIHARSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I +  IVSESS+ +G+RR+EA+TG+R    +   ++ ++ + +    +  ++ G + + 
Sbjct: 674 RIGMFKIVSESSVASGVRRVEALTGKRCEEAMYALEDTIRGIRNLFN-NAKDLQGVIAKY 732

Query: 764 WEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQKK 819
            EE+  ++    K   Q    ++D       DVN +  +  +  +++++ K+++  +++ 
Sbjct: 733 MEEHDAMRKEIEKFSAQAVERLKDSLVANAKDVNGLKVVKAVLPINAEQAKNLVFKVREA 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           I   ++ +VG +   K  + I+ ++D++     NA  + R +AK++ GG GGG+PH A +
Sbjct: 793 IPQHLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLIQGG-GGGQPHYASA 851

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N +    A+      
Sbjct: 852 GGKNLDGISVAVDKAVEL 869


>gi|81871231|sp|Q8CFX8|SYAC_MESAU RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|26522952|dbj|BAC44844.1| alanyl trna synthetase [Mesocricetus auratus]
          Length = 968

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/971 (32%), Positives = 480/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F+ FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAREIRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FAIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDAKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRETDGLLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +           +     + V A+ ++   VEE V+GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYH--SDSSGAYVFECTVATVLALRREKMFVEEVVTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 EAEEIVNAMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            +SL+   + +K       +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 RRSLSIMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|149277763|ref|ZP_01883903.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149231451|gb|EDM36830.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 900

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/944 (33%), Positives = 494/944 (52%), Gaps = 95/944 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF+   H ++PS+ ++  NDPTLMFTN+GM  FK++F G+    Y  +
Sbjct: 1   MTAKEIRQAYLKFFESKQHHIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAAIKYPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + + 
Sbjct: 61  TDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYRIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + +LY+++++         DEEA++LWK+   +  ++II     DNFW M +TGPCGPCS
Sbjct: 121 KDKLYVSIFEGDEKEGLPRDEEAYELWKQF--VPEERIILGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWN VFMQF +        LP   +DTGMG
Sbjct: 179 EIHVDCRPDDERATVAGKSLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  VLQEK +NYD D+F+ LIQ      G+ Y  +    +  RV+ DH+R+ SF+IA
Sbjct: 239 FERLVRVLQEKPSNYDTDVFQPLIQFIASHAGVVYGADEKTDIAMRVMADHIRAISFVIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   EP +  L+P L  +    + EL+  K  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLNQLVPVLADQFSGVFDELVLQKDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH-------------------------LGKDEI 381
           +++ +  E+  F +TL  G+   +                              L    +
Sbjct: 359 VQKVVMEEEVSFLRTLATGIQRFENYTKKQADFLMSENAIDTEKPFEHPWVYSILKDQMV 418

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++GD AF+L DT+G P+D+ + +   +    ID+  +N AL +Q+ R+RA +  + +G  
Sbjct: 419 ISGDFAFELNDTYGFPIDLTELMAREKNW-VIDMKEYNTALLKQKERSRAAT-AIDTGDW 476

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             +   L      ++F+GYD       + + RKV                          
Sbjct: 477 IVVHGDLD-----SEFVGYDDFETETQVIKYRKV-------------------------- 505

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIV 560
              A   ++ ++V  +TPFYAE+GGQ+GDTG          +     KK  G+ VH+   
Sbjct: 506 --NAKGREQYQIVLSKTPFYAESGGQVGDTGRLEDHSRLFSVEVTDTKKENGVIVHYTDT 563

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L  + +    ID   R     NH+ATHLLH AL  +LG+HV+Q GS + P+ LRFD
Sbjct: 564 LPEDL--DGTFWAVIDEDKRLLSQDNHTATHLLHAALKKVLGTHVNQKGSLVNPEYLRFD 621

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVV 679
            +H   I+  +L +IE  VN  + +N+P+  +  +  + AI+SG  AL G KY + VRV+
Sbjct: 622 FSHFAKISEEDLAAIEHLVNQKVRENIPLKEQRDVPYDQAISSGVTALFGEKYGELVRVI 681

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           + +      +S  LCGGTHV +TG+I    I+SES++ AG+RRIEAIT  +A + ++ Q+
Sbjct: 682 TFD----DHYSKELCGGTHVQATGQIGYFKIISESAVAAGVRRIEAITADKAEAFILDQN 737

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV--EDLSCHKIADVNFM 797
            +L  L + LK +  ++   V  + EE  +L+    K  L  +   ++       DVN M
Sbjct: 738 RELNELKALLKGN-KDLKAAVSGLLEENARLKKEAEKAMLAQSADLKNEVIKLAKDVNGM 796

Query: 798 SHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNA 852
           + I + V       +K++   ++  + S + ++     + K  + +++TE+L+     NA
Sbjct: 797 NFIATHVVLNSMDAVKNLAFEVKD-LVSNLFLVFTTLIDDKPGITVMLTENLVKERGLNA 855

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++ R  AK + GG GGG+P  A +GG N +     +      +
Sbjct: 856 SNIVRELAKEIQGG-GGGQPFYATAGGKNKDGLAVVLQKAEDIV 898


>gi|1015321|dbj|BAA06808.1| alanyl-tRNA synthetase [Homo sapiens]
          Length = 968

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/971 (32%), Positives = 480/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGK NDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKQNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +  +        +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 476 RGLEVTDDSPKYNYHL--DSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLKVGDQVWL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I     V T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            K L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL 
Sbjct: 771 KKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|313676999|ref|YP_004054995.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
 gi|312943697|gb|ADR22887.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126]
          Length = 876

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/932 (34%), Positives = 495/932 (53%), Gaps = 92/932 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FFQ+  H+++PS+ ++  +DPTLMFTN+GM  FK+ F G +      V
Sbjct: 1   MTSSEIRKKFLNFFQEKEHKIVPSAPMVIKDDPTLMFTNAGMNQFKDYFLGNKVAEATRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ +W+LLT  F L 
Sbjct: 61  TDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWSWELLTDIFKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EA+  WK    +   +I++   NDNFW M +TGPCGP S
Sbjct: 121 KERLYVTVFEGDKADGIPFDQEAYDFWK--GHIDESRILKGDKNDNFWEMGDTGPCGPAS 178

Query: 174 EIFFDQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        G    + +    +EIWNLVF+QF ++       LP   IDTGMG
Sbjct: 179 EIHVDLRDEADIAKIPGKDLVNNDHPLVVEIWNLVFIQFNRKADGSLHALPAQHIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
            ER+   +Q K +NYD D+F  L+    +++G KY       +  RVIVDH+R+ S  I+
Sbjct: 239 FERICMAIQNKKSNYDTDVFTPLLDELAKISGKKYGELSKIDIAFRVIVDHIRAISLSIS 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    L   EP +  L+P L  +    +PEL   + L
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYGYTFLDLKEPFLFKLVPILAKQFEEVFPELKAQQEL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           +E+ ++ E+  F +TL+ GL  L+ + + L    +  ++G VAF+LYDT+G PLD+   I
Sbjct: 359 VEKVIKEEETAFLRTLENGLKRLESIKAELSSSGNATISGAVAFELYDTYGFPLDLTALI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F QA+ EQ++R+++ +        E   + +  +    +F+GYD ++
Sbjct: 419 AKENGLT-VDEKGFEQAMNEQKNRSKSAAK------METGDWQIVNEGRDVEFVGYDEVK 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R V  +                              +++++V D+TPFYAE+
Sbjct: 472 ADAKILRYRSVKNKNK----------------------------EQIQLVLDKTPFYAES 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG        +++ D +K+   + VH   V++   + +  +   ID   RR++ 
Sbjct: 504 GGQIGDTGILKVSNETIKVLDTKKE-NDLIVHF--VDKIPAQLDAKVHAQIDNDRRRKIV 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHL+H AL  +LG HV Q GS ++   LRFD +H   +T  E+  +E  VN+ I 
Sbjct: 561 YNHSATHLVHAALREVLGDHVQQKGSLVSDKLLRFDFSHFSKMTDEEILKVERRVNEKIR 620

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P    R +  E+A A GA AL G KY D VR+++ +      +S  LCGG HV +TG
Sbjct: 621 ENIPQQEERNIPIEEAKAKGAMALFGEKYGDTVRMITFDPN----YSVELCGGVHVPATG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I +E+S+ AGIRRIEA+TG++A  + + Q+  LK + + LK S  ++   VE++
Sbjct: 677 NIGQFKITTETSVAAGIRRIEAVTGEKAEEYHLDQEAILKQVNALLK-SPKDLAQAVEQL 735

Query: 764 WEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQK 818
            +E  +LQ  L   + K    ++D         N +S IISE+   ++  LK +   L+ 
Sbjct: 736 MKEKNELQKSLEKEQSKQAGALKDELIKNAEKQNDISVIISEIALPNADALKKLSFELKN 795

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGG 866
           ++ S +  ++    + K  + +V++E+L+     NA  + R  AK +             
Sbjct: 796 EVDS-LFAVLACDVDGKPQISVVISENLVESKDLNAGKIIRDLAKNIQGGGGGQAFFA-- 852

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                     +GG       Q +    +  K+
Sbjct: 853 ---------TAGGKKLEGLPQVVLQAKTMAKE 875


>gi|126305114|ref|XP_001362507.1| PREDICTED: similar to Alanyl-tRNA synthetase [Monodelphis
           domestica]
          Length = 968

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/969 (33%), Positives = 478/969 (49%), Gaps = 92/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRRRFIDFFKRNQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPAHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LNRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVDRLYVTYFGGNEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGD-RDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARQYTGCVGADDVDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L         L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNAKRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDHIMLDI---YAIEELRI 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L      +K + +               + VKA+ ++   V+E  +GQ+  VV D+T 
Sbjct: 476 KGLQVTDDSLKYNYQ--SDSSGTYEFENPVATVKALRREKMFVDEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + D Q +  G  +H   V  G LR    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKEDDSSEDKTEFTVKDAQVR-GGYVLHIGTV-YGSLRVGDRVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ +L+
Sbjct: 592 YIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQQLR 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E   N +IA   PV  +      A A  G  A+    Y D VRVVS+           
Sbjct: 651 ETETIANGMIAAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVAKLLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++     L IVSE +I  GIRR+ A+TG  A+  L   D  
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGALVIVSEEAIAKGIRRVVAVTGVEAQKALRKADSL 770

Query: 742 ---LKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
              L  L + +K       ++   + +  E        +++K +L    + L+  ++DL 
Sbjct: 771 KSSLSELETKVKAQTAPNKDIQREISDFGELLATTVVPQWQKDELRENLKALKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RANKADVQKRVLEKTRQLIESHPNQPLVIMEMESGASAKALNEALKLFKTHSPETSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K   L  V ++  ++   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDSEANKIICLCQVPQNAANKGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASF 895
           +A++   SF
Sbjct: 950 EALSLATSF 958


>gi|195155623|ref|XP_002018701.1| GL25810 [Drosophila persimilis]
 gi|194114854|gb|EDW36897.1| GL25810 [Drosophila persimilis]
          Length = 966

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/970 (31%), Positives = 465/970 (47%), Gaps = 87/970 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 5   TAKEVRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSK 64

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT  
Sbjct: 65  WVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTNR 124

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +  DE        E  +LW  + GL  + I+  +  DNFW M ETGPC
Sbjct: 125 LHLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID GMG
Sbjct: 184 GPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +V+Q K +NYD DLF  L +A +  TG                 + +RV+ DH R
Sbjct: 243 FERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHAR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 303 TITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGDAFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I + +  E+ +F KTL RG  LL+  +  LG   I+ GDVA++LYDT+G P+D
Sbjct: 363 VKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYGFPVD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   + L  ID+  +  A    +  +   S G G+   E+I   +       +  G
Sbjct: 423 LTQLMAEEKSLE-IDMAGYEAA----KQNSYVLSQGKGASKIEEINLDVHAISQLQE-QG 476

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  +   V  ++         +S + A+  + + V E  +GQK  +V D+T 
Sbjct: 477 VPPTNDS-FKYKYEAVSEERDSAYNYQECTSKIVALRFENQFVNEISNGQKAGIVLDKTN 535

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L+    L L ID 
Sbjct: 536 FYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDE 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E 
Sbjct: 595 ERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAKTEQ 654

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEYED 685
              D++ +N+P+  +      A    G  ++    Y D VRV+S            + E 
Sbjct: 655 LTKDMVYKNVPIYAKESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDAEA 714

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   +   +   + +
Sbjct: 715 GEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQEI 774

Query: 746 ASFLKV---------SQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNVEDLS- 787
              LK             + V  + E+ E+         +K ++ +  + L+  ++D   
Sbjct: 775 VK-LKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDDKER 833

Query: 788 -----------------CHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829
                            C      N +   +   ++ K L + +  ++ ++     M   
Sbjct: 834 SLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAMFFS 893

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N ++ ++
Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDRVEE 952

Query: 888 AIAGVASFLK 897
            I     F +
Sbjct: 953 IIQLATKFAQ 962


>gi|194476839|ref|YP_002049018.1| alanyl-tRNA synthetase [Paulinella chromatophora]
 gi|171191846|gb|ACB42808.1| alanyl-tRNA synthetase [Paulinella chromatophora]
          Length = 891

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/909 (36%), Positives = 508/909 (55%), Gaps = 53/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF K GH+ + S+ LIP +D T++ T +GM+PFK IF G+E+P   + 
Sbjct: 13  MTGAEIREAFLDFFAKRGHQRMASALLIP-DDSTVLLTIAGMLPFKPIFLGREQPPALSA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC+R     ND++NVG+T RHHTFFEMLGNFSFG YFKE+AI  AW+L T+ F LD
Sbjct: 72  TSSQKCIRT----NDIENVGKTARHHTFFEMLGNFSFGNYFKEQAIIWAWELSTEVFGLD 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L ++++ ED EA  +W+ + G++  +IIR+   DNFW+    GPCGPCSEI++D   
Sbjct: 128 PANLVVSIFQEDNEAALIWQNLIGVNPKRIIRMGAKDNFWASGPIGPCGPCSEIYYDFHP 187

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
            + G    + E+  R+IE +NLVFM+    ++     L   +IDTGMGLERMA +LQ+K+
Sbjct: 188 DL-GHDDINLEDDSRFIEFYNLVFMESNCDSQGNLTPLENKNIDTGMGLERMAQILQKKS 246

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   LI+ +  + G+ Y   N    ++ +VI DH R+ S LI DG+  +N GRG
Sbjct: 247 NNYETDLIFPLIKKAASLAGIDYSEVNEKGKISLKVIGDHSRAISQLICDGVSASNLGRG 306

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+LRR++RR + + RLLG  +  ++ +  A    M  AYP+L + + +I   L  E+ RF
Sbjct: 307 YILRRLLRRVVRHGRLLGINDHFLVAMGEASIELMSKAYPQLEEKRDIILNELAQEEARF 366

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL+RG  LL  +L    +++ ++G+ AF+LYDT+G PL++ Q+I    G   +D+  F
Sbjct: 367 LETLERGEKLLSDILK--SENQQISGEQAFELYDTYGFPLELTQEITQEHGRT-VDVAGF 423

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
             A++ QR RA+   + +       I   + E    T F GY++L  S            
Sbjct: 424 EVAMKAQRQRAKEAIVTIDPTLRSTI-EGIAESIKPTLFFGYEVLDRSC----------- 471

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        V A++ + E+V+EA +G  V+V+ D TPFY E+GGQ+GD G  +G  
Sbjct: 472 ------------QVVALIVKDELVQEASTGDVVKVILDGTPFYGESGGQVGDRGMLLGSE 519

Query: 539 IR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + I +   + +G+F+H   +++G LR    ++  +D   RR+   +H+ATHLL 
Sbjct: 520 TEKTSLIVIIENVSRNQGLFIHSGRIKKGTLRIGDLVIAKVDTHLRRRAQAHHTATHLLQ 579

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++ + +SQ GS +  D LRFD ++   I+  +L+ IE+ +ND I +   V    M
Sbjct: 580 SALKQLVDASISQAGSLVDFDRLRFDFSYPGAISLEKLEKIENLINDWINEIHRVEVTEM 639

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A  +GA A+ G KY   VRVV++        S  LCGGTHVS+TGEI L  I+SE+
Sbjct: 640 KLEQAKVNGAIAMFGEKYGAYVRVVNIPN-----VSMELCGGTHVSNTGEIGLFKIISET 694

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            + +GIRRIEAI G     +L  +D  +K L    K     V+ RV  + +E +      
Sbjct: 695 GVASGIRRIEAIAGTAVLPYLNDRDRLVKELGDHFKAPPSEVMVRVIALQDELKTTNKAL 754

Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
              + +L      +       + D   +    + V +  L +    LQ+++     +L+G
Sbjct: 755 LTARSELISAKSAILASQVELVGDFQILVSSFTGVQAALLSTAAKQLQEQLGDNTAVLLG 814

Query: 830 -ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
            I +E K S +    +D++ R  NA  +    AK+ GGGGG GR ++AQ+GG N    + 
Sbjct: 815 SILEEGKVSFVAAFGKDVVQRGLNAGKVVNHIAKLCGGGGG-GRANLAQAGGRNLKSFES 873

Query: 888 AIAGVASFL 896
           A+    S L
Sbjct: 874 ALKIAKSEL 882


>gi|159902592|ref|YP_001549936.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|205830180|sp|A9B9E5|SYA_PROM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159887768|gb|ABX07982.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 890

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/907 (37%), Positives = 520/907 (57%), Gaps = 56/907 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IRT FL FF + GH++LPS+SL+P +DPT++ T +GM+PFK +F G E+     V T Q
Sbjct: 19  EIRTAFLHFFAERGHQVLPSASLVP-DDPTVLLTIAGMLPFKPVFLGHEERPSSRVVTSQ 77

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RH T+FEMLGNFSFG YFK+ AIQ AW+L TK F LD + L
Sbjct: 78  KCIRT----NDIENVGRTARHQTYFEMLGNFSFGDYFKKEAIQWAWELSTKTFGLDPKYL 133

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++++ ED++A+++W+ I G++ D+IIR+   DNFWS   TGPCGPCSE+++D    + G
Sbjct: 134 VVSIFREDDDAYEIWRNIIGVNPDRIIRMDEADNFWSSGPTGPCGPCSELYYDFNPEL-G 192

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+  R+IE +NLVFM+F + +      L   +IDTGMGLERMA +LQ+  NNY+
Sbjct: 193 NHCIDLEDDTRFIEFYNLVFMEFNRDSTGRLSSLSNCNIDTGMGLERMAQILQKVPNNYE 252

Query: 246 IDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   L++    + G+ Y+  +    ++++VI DH+R+   LI+DG+  +N GRGY+LR
Sbjct: 253 TDLIYPLLEKVAYLVGVDYQKTDKKTRISYKVIGDHIRACVQLISDGVSASNLGRGYILR 312

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG  +P ++ L     + M S YP+L++ + +I + L+ E+ RF +TL
Sbjct: 313 RLLRRIVRHGRLLGIPKPFLIDLGEVAISLMKSTYPQLLERRDVILKELQREELRFLETL 372

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  +LS+  K+  ++G+ AF+LYDT+G PL++ Q+I     +  +D+ +F +A+
Sbjct: 373 ERGERLLADLLSNNPKE--ISGEQAFELYDTYGFPLELTQEIAEENSIE-VDLKAFEKAM 429

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           + QR RA+A S  +     + +  +++E    T F GY+ L                   
Sbjct: 430 QRQRIRAKAASTTIDLTLQDTLDKAVRE-LKPTNFKGYECL------------------- 469

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-- 540
                 +S V+AI   GE+ +EA     ++V  D TPFY E+GGQ+GDTG    + +   
Sbjct: 470 ----TETSTVQAIFINGELAQEAQENDVIQVALDITPFYGESGGQIGDTGILFKESVTNC 525

Query: 541 -LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            ++I  V +    +FVH  IV+ G L+    +   + + NRR+  INH+ATHLL  +L  
Sbjct: 526 LIEIDSVIRN-NDVFVHRGIVKNGRLQVGDIIQSQVHHINRRRAQINHTATHLLQASLKE 584

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I+GS +SQ GS ++ + LRFD   S P++S EL+ +E  +N  I+++  +V + M  +DA
Sbjct: 585 IVGSEISQAGSLVSFERLRFDFHCSSPVSSEELEKVEKKINLWISESHSLVVKEMKIDDA 644

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA A+ G KY   VRVV V        S  LCGGTHV++T +I    IV ES I AG
Sbjct: 645 KQAGAVAMFGEKYGTLVRVVDVPG-----VSMELCGGTHVANTADIGAFKIVGESGIAAG 699

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777
           IRRIEA+ G     +   +D  ++ L+   KV    +V RV  + +E + L   LI A+ 
Sbjct: 700 IRRIEAVAGPGVFDYFNARDSVVRILSERFKVQSNEIVDRVIALQDEVKLLGKSLIKAQE 759

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----- 829
           ++          K   +    ++ H +  V S+ L+S    L  ++     +L+      
Sbjct: 760 EIAFAKTSALVSKATAIKSSHYIIHRLDGVPSEALQSAAKVLVDQLGDCSAVLLAGTPTQ 819

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K   V     + +    +A       AK+ GGGGG GRP+ AQ+GG +    D+A+
Sbjct: 820 SDPNKVILVAAFGAKTVAHGLHAGKFLGPIAKMCGGGGG-GRPNFAQAGGRDAKPLDKAL 878

Query: 890 AGVASFL 896
                 L
Sbjct: 879 DLAREQL 885


>gi|71891957|ref|YP_277687.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|83305841|sp|Q493M6|SYA_BLOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71796063|gb|AAZ40814.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 879

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/902 (39%), Positives = 519/902 (57%), Gaps = 66/902 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N+  IR  FL FF+K GH+++ SS+LIP +D TL+FTNSGM  FKNIF G +KP+++ V
Sbjct: 3   KNIDDIRQEFLNFFKKKGHKIISSSTLIPNSDQTLLFTNSGMNQFKNIFLGIDKPLFKRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T Q+CVRAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK  AIQ AW+LLT    F+
Sbjct: 63  ATAQRCVRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKNEAIQFAWELLTDVNWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +L++TV++ D E++ +W     +  + I++I +N       DNFW M   GPCGPC
Sbjct: 123 LSKNKLWVTVHNCDGESYDIWSNQIDIPNEHIVKIGSNTNDFCDSDNFWQMGNIGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D+G+   GG PGS EE GERY+EIWNLVF+QF++Q       LP +S+DTGMGLE
Sbjct: 183 SEIFYDRGDRFQGGPPGSLEEFGERYVEIWNLVFIQFDRQENGRLLSLPMLSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+ ++LQ   +N+ ID+FK LI +  ++  +     N  +  VI DH+R+ SFLI DG+L
Sbjct: 243 RITSILQGVNSNFSIDVFKKLISSISRIMKINDIYIN-RSVYVIADHIRACSFLIQDGVL 301

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           PANEGRGYVLRRI+RRA+ + + LG  +     L+  L   M      L + K  I E L
Sbjct: 302 PANEGRGYVLRRIIRRAILHGKKLGVNDIFFYKLVSPLIKYMQHIADILHEKKDFIAEIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
            SE++ F  TL RGL LL+  L  L K   LNG++AF LYDT+G P ++ QD+   RG+ 
Sbjct: 362 LSEEKLFQDTLKRGLELLEKQLIRL-KGNCLNGEIAFNLYDTYGFPFELTQDVCLKRGIH 420

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+QA+  Q+   +  +        +  +  L     ++ F+GYD L        
Sbjct: 421 -VDQEGFDQAMLTQKKYTKELNK------FDISYEKLSLCNVSSIFVGYDKL-------- 465

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V A+ Q  + + +  + ++  V+ + TPFY E+GGQ+GD 
Sbjct: 466 ---------------ICKSRVMALFQNNKSINKIYTKEEGIVILNNTPFYGESGGQIGDC 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G         Q+++ +K  +    H  IV  G +     +V  +D   R+ +S+NHSATH
Sbjct: 511 GQLNTISGFFQVSNTKKYGQ-TIGHLGIVNSGTISVGEEIVAQVDQHKRKCISLNHSATH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  ALS +LGSHV+Q GS +    LRFD  H   +T+ ++ ++E+ VN+ I +N P+  
Sbjct: 570 LLRAALSQVLGSHVTQKGSLVNDRYLRFDFYHHATMTTTQMNTVENIVNEQIWKNAPITV 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +M  E A  SGA  L+  +Y+ +VRV+ +     G  S+ LCGGTH   TGEI +  I 
Sbjct: 630 DVMPIELARNSGAVILINKQYDKKVRVLKI-----GNFSTELCGGTHAEHTGEIGVFMIT 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E SI AGIRR+EA+T   A S +      LK++    +    N++ ++ E    Y+KL+
Sbjct: 685 KECSIAAGIRRVEAVTNNVALSAIHQYKMLLKNIFQSTQSDDKNILSKIHEFKCRYQKLE 744

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
                 + Q  ++         + I DV  +   +  + SK L ++ D ++ +++SG+I+
Sbjct: 745 KEIDTLRNQQIIQQSLSFIKDVYYIKDVRILVKQVVNMTSKTLFNMTDCIKHQLKSGVIV 804

Query: 827 LVGISKEKKASVLIVVTEDLL--DRFNAVDLAR-----LSAKVLGGGGGGGRPHMAQSGG 879
           L+ ++  KK ++++ VT+DL+  +R NA+ L       L  K  G      RP  AQ+G 
Sbjct: 805 LINLNTNKKINLVVAVTKDLIERNRINALSLVHYIIKILGGKGGG------RPDFAQAGI 858

Query: 880 PN 881
            N
Sbjct: 859 NN 860


>gi|281420549|ref|ZP_06251548.1| alanine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405322|gb|EFB36002.1| alanine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 887

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/935 (34%), Positives = 494/935 (52%), Gaps = 87/935 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M   + +R +F +FF+  GH+++PS+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 1   MMTANEVRESFKKFFEGKGHKIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI +AW+ LT+   
Sbjct: 61  RRVDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLTEILK 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D EA   W K   + AD II    +DNFW M +TGPCGP
Sbjct: 121 LNPADLYVTVFEGSKEEGLERDNEAAGYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D +       +PG    +++  + IEIWN+VFMQ+ ++       LP   IDTG
Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNH 272
           MG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      +  
Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKEIEAISGKKYGFTTPTGENGEGKDEQEKIDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV  DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  +  M  L+  L  
Sbjct: 299 RVCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVNVLVE 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFK 389
           +MG+A+PEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+
Sbjct: 359 QMGAAFPELPAQQELITRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTQLDGVSAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ +++Q+ RAR       +      W  LK
Sbjct: 419 LFDTYGFPLDLTELICRENGYT-VDAAGFNEEMKKQKERARNA-----AAVENGDWEVLK 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G   F+GYD       +   RKV  +K                              
Sbjct: 473 E--GDQNFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   +Q+ D  K+     +H  IV+        
Sbjct: 504 -YELVLDNTPFYGEMGGQVGDKGVLVSENETIQVIDT-KRENNQSIH--IVKELPKDVNA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D +NR   + NH+ATHLL + L  +LG HV Q GS +  D LRFD +H + +T 
Sbjct: 560 DFMACVDIENREGSAANHTATHLLDYCLKQVLGDHVEQKGSYVDKDTLRFDFSHFQKVTD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN++I  + P+        E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRKVEHMVNEMIRADYPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S+  CGG H   TG+I    I+SESS+ AGIRRIEA+TG+     + G  + + +L   
Sbjct: 675 -SAEFCGGIHAKGTGKIGFFKIISESSVAAGIRRIEALTGKACEEAIYGLQDTIVALKGL 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI--ISEV 804
              +  ++ G + +  +E+  L+    K + Q     +D       ++N +  +  +  +
Sbjct: 734 FN-NAKDLEGVIRKYIDEHDALKKDVEKFQAQAVERAKDKLVENAKEINGVKVVTAVLPM 792

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
           +    K ++  +++ +   +I +VG     K  + ++ ++D++     NA  + R +AK+
Sbjct: 793 EPAAAKDLVFKVREALPENMICVVGSVYNDKPMLSVMFSDDMVKDHGLNAGKMIREAAKL 852

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + GG GGG+PH AQ+GG N +    A+  V    +
Sbjct: 853 IQGG-GGGQPHYAQAGGKNKDGLSAAVDKVVELAQ 886


>gi|315503215|ref|YP_004082102.1| alanyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409834|gb|ADU07951.1| alanyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 893

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/911 (36%), Positives = 494/911 (54%), Gaps = 72/911 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  FL  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MKTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL TK     
Sbjct: 61  TSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA+ +W+  +G+ A++I+R    DNFWSM   GPCGPCSE++
Sbjct: 117 GFGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQFE+              LP  +IDTGMGL
Sbjct: 176 YDRGPAY-GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----------GNNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  K ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           +S  LI DG+ P+NEGRGYVLRRIMRRA+   RLLGY +  +  LLP     M  +YPEL
Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
            +    I +   +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKAALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GL  +D   F + + +QRSRA+A +    +G T+   + S+ +  G  +F
Sbjct: 415 DLTLEIAAEQGL-QVDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  L                          S V+A++  G  V  AV G  +E+V D 
Sbjct: 474 TGYTEL-----------------------SRESRVRALLSGGAAVSAAVEGDTIELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R+  +    ID 
Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + L  +E 
Sbjct: 571 SRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVEQ 630

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+++  +L V   + ++E+A   GA AL G KY +RVRVV V     G ++  LCGGT
Sbjct: 631 QVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGGT 685

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+ + ++ L+ I+SE+S+ +G+RRIEA+ G  A   L  +   +  LA   +V    V 
Sbjct: 686 HVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQVA 745

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHI----ISEVDSKELKS 811
            RVE+   + R  +    K + Q  L        +  DV  ++++         + ++++
Sbjct: 746 DRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAKDVRGVAYVGTEAPEGAAANDVRT 805

Query: 812 VMDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           +   ++ +I      ++ V      KAS+++ V +    R  +A DL + +      G G
Sbjct: 806 LAQEIRGRIDAARPAVVAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS----GRG 861

Query: 869 GGRPHMAQSGG 879
           GG   +AQ GG
Sbjct: 862 GGSDDLAQGGG 872


>gi|114663431|ref|XP_001169474.1| PREDICTED: alanyl-tRNA synthetase isoform 1 [Pan troglodytes]
 gi|114663433|ref|XP_001169520.1| PREDICTED: alanyl-tRNA synthetase isoform 2 [Pan troglodytes]
          Length = 968

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/971 (32%), Positives = 479/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++  +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +  +        +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 476 RGLEVTDDSPKYNYHL--DSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLKVGDQVWL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I     V T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESM 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            K L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL 
Sbjct: 771 KKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +   +        ML 
Sbjct: 831 RASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQ 949

Query: 887 QAIAGVASFLK 897
           +A+    SF +
Sbjct: 950 EALQLATSFAQ 960


>gi|320528371|ref|ZP_08029533.1| alanyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131285|gb|EFW23853.1| alanyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 900

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/915 (34%), Positives = 481/915 (52%), Gaps = 62/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF   G  + P +SLIP NDPTL++ N+G+   K  F G EKP    + 
Sbjct: 29  SGNEVRQKFLDFFASKGCMIEPGASLIPHNDPTLLWINAGVSALKKYFDGSEKPASNRIC 88

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVGRT RHHTFFEMLGNFS G YFK+ AI  AW+ LT  +    
Sbjct: 89  NAQKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKKEAITWAWEFLTSPEWIGF 144

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RLY+TVY +D+EA+  W ++ G+    I R  T DNFW +   GP GP +E+++D+G
Sbjct: 145 DPKRLYVTVYPDDDEAYNQWVQV-GMIPSHIRR--TEDNFWEIGR-GPGGPDTELYYDRG 200

Query: 181 ECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNK----QERFILPKMSIDTGMGLE 231
           E          L     E +RYIE+WN+VF Q++ +       E   LP+ +IDTGMGLE
Sbjct: 201 EKYDPEGIGEKLFFEDLENDRYIEVWNIVFSQYDCRPGEVDRHEYKELPQKNIDTGMGLE 260

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGI 290
           R+  ++Q+   N+D DLF  +I A+E+     Y      + +RVI DH+R+ +F IADG 
Sbjct: 261 RLVCLIQDGETNFDTDLFLPIIHATEKYAKHSYSEKEYKMAYRVIADHIRTVTFAIADGA 320

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           + +NEGRGYVLRR++RRA+ Y   LG     M  L+  +   M S YP L +   LIE+ 
Sbjct: 321 MFSNEGRGYVLRRVLRRAVRYGIKLGIDGAFMYKLVKVVADIMISYYPYLQEKISLIEKL 380

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+E F KTL  G  LL   L+     +IL G+V FKLYDT+G P ++  +I    G 
Sbjct: 381 VKQEEESFHKTLANGEALLQNALAEHADTKILPGEVMFKLYDTYGYPKELTTEIAEEEGY 440

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F++ ++ Q++RAR     + S   +     L +    ++F GY          
Sbjct: 441 R-VDSEGFDKEMQAQKTRAREARGNIQSMHGQSA--DLMDFTQESKFTGY---------- 487

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V  + + G  V+      + +++ D+T FYAE+GGQ  D
Sbjct: 488 -------------TDTHSRGKVIGLFKDGVRVDTLT--DEGDIILDETCFYAESGGQCAD 532

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D  +  +T+VQK      +HH  +  G +     L    DY+ R++   NHS+ 
Sbjct: 533 TGVVWNDHFKANVTNVQKAPHKQPLHHIAIVEGTVSEGNVLEGEYDYEKRQRTRANHSSL 592

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG H++Q GS    +  RFD TH +  T  +L  +E  VN  IA   P+V
Sbjct: 593 HLLQAALKKVLGDHIAQAGSYNCAEYGRFDFTHFEKPTEEQLNEVERLVNKQIALAQPIV 652

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T +M  E A  SGA AL   KY D VRVVS+     G  S   CGGTH ++T ++ +  I
Sbjct: 653 TEVMAVEAAKNSGAIALFDEKYGDTVRVVSM-----GDFSKEFCGGTHANNTADLCVFKI 707

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRK 769
            SE SI +GIRRI + T   A      +++ L   A  +K+        ++  + EE  +
Sbjct: 708 TSEESIGSGIRRITSETKFDAYKDFKDEEQYLLECAKLMKLQSWQGFKEKLVALQEENAQ 767

Query: 770 LQLIHA--KRKLQLNVEDLSCHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGI 824
           L+  +   K+   L+  D +  K   +N +S +   +   D+  LK+  + ++ K+  G 
Sbjct: 768 LRKDNDAHKQAELLSSADTAVQKAETINGLSCVLLSLDGFDTNSLKTYAENVRNKLVDGF 827

Query: 825 IMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +  V  + + K + +   ++  +     A D+ + +A+ L GG GGGRP MAQ+GG + +
Sbjct: 828 V-FVSNTTDGKVTFVCASSKTAIAKGKKAGDIVKAAAQ-LTGGNGGGRPDMAQAGGKDTS 885

Query: 884 KADQAIAGVASFLKK 898
           K  +A + V   L +
Sbjct: 886 KVQEAHSLVREILAQ 900


>gi|317505218|ref|ZP_07963150.1| alanine--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315663647|gb|EFV03382.1| alanine--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 916

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/934 (34%), Positives = 488/934 (52%), Gaps = 87/934 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M   + +R +F +FF+   H+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 30  MMTANEVRESFKKFFESKEHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 89

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     
Sbjct: 90  RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDFAWEYLVDVLH 149

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D+EA   W K   + AD II    +DNFW M +TGPCGP
Sbjct: 150 LNPEDLYVTVFEGAPEEGLKRDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 207

Query: 172 CSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           C+EI  D +       LPG    +++  + IEIWN+VFMQF ++       LP   IDTG
Sbjct: 208 CTEIHVDSRTPEEKAKLPGRELVNKDNPQVIEIWNIVFMQFNRKADGSLEPLPMHVIDTG 267

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNH 272
           MG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      +  
Sbjct: 268 MGFERLVRMLQDKHSNYDTDIFQPVIKQIELLSGKKYGFTTPTGENGEGKDEQEKIDIAM 327

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  L+P L  
Sbjct: 328 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLVPVLVQ 387

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFK 389
           EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+
Sbjct: 388 EMGEAYPELSAQQELISRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTELDGTSAFR 447

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   F++ + +Q++RAR       +      W  ++
Sbjct: 448 LFDTYGFPLDLTELICREHGYT-VDEKGFDEEMAKQKARARNA-----AAVENGDWEVVR 501

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           +  G   F+GYD    +  +   RKV  +K                              
Sbjct: 502 D--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF--------------------------- 532

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  +     + I D  K+     +H  IV+      E 
Sbjct: 533 -YEIVLDYTPFYGEMGGQVGDQGTLVSANETINIVDT-KRENNQSIH--IVKELPKDIEA 588

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  ILG HV Q GS + P  LRFD +H + ++ 
Sbjct: 589 EFMACVDVEKRNGSAANHTATHLLDYALKQILGDHVEQKGSYVDPTTLRFDFSHFQKVSD 648

Query: 630 AELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            +L+ +E  VN +I ++ P+        E+A   GA AL G KY D+VRVV         
Sbjct: 649 EQLRQVERLVNKMIREDYPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP----- 703

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H  STG+I    I+SESS+ AGIRRIEA+TG      +    + +  L S 
Sbjct: 704 -SCEFCGGIHAKSTGQIGFFKIISESSVAAGIRRIEALTGVACEDTIYALQDTMNDLKSM 762

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHI--ISEV 804
              +  ++   + +   E+ +++    K + Q    V+D    +  +VN +  I  +  +
Sbjct: 763 FN-NAKDLKATLLKFIGEHDEMRKEIEKFQAQAVERVKDELLKRAQNVNGVQVIKAVLPL 821

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862
           +    K +   L++ +   ++ ++G +   K  + ++ ++D++     NA  + R +AK+
Sbjct: 822 EPAAAKDLAFKLRETLNEKLVAVIGSTAGDKPLLTVMFSDDMVKDYALNAGKIIREAAKL 881

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + GG GGG+PH AQ+GG N      A+  V   +
Sbjct: 882 IQGG-GGGQPHYAQAGGKNIEGISAAVDKVIELV 914


>gi|312379940|gb|EFR26076.1| hypothetical protein AND_08072 [Anopheles darlingi]
          Length = 975

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/970 (31%), Positives = 475/970 (48%), Gaps = 89/970 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             S IR  FL+FF +  H  + SSS+IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 12  TASQIRKIFLDFFAEKKHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPSSEMAR 71

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLT+ 
Sbjct: 72  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWELLTER 131

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E   +W ++ G+    ++  +  DNFW M ETGPC
Sbjct: 132 LRLPKDRLYVTYFGGHPESGLEPDLECRSIWIEL-GIPEAHVLPGSMKDNFWEMGETGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           +++    +EIWNLVF+Q+ ++      +LPK  ID GMG
Sbjct: 191 GPCSELHFDRIGGGRSVPELVNQDDPDVLEIWNLVFIQYNREQDGSLKLLPKKHIDCGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L  A    TG    G            + +RV+ DH R
Sbjct: 251 FERLVSVIQDKRSNYDTDVFVPLFDAIRAGTGAPPYGGRVGAEDTDGVDMAYRVLADHAR 310

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 311 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVDTVVELLGDTFPE 370

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 371 VRKDPQHIKNVIGEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD 430

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   + ++ ID+  + +A    +  +   S G     T  I   +   +  ++   
Sbjct: 431 LTQLMAEEKEMS-IDMEGYERA----KHESYLISQGKEKSKTATIDLDV---HAISELQA 482

Query: 460 YDLLRGSKFMKEDRKVLCQKPPI-DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
             L       K   +     P    +  G    + A+   G  VEE  +GQ+  V+ D+T
Sbjct: 483 KQLAPTDDSTKYRYRAESTDPQAQYVFEGCRGRIVALRFGGAFVEEVTAGQECGVILDKT 542

Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            FYAE+GGQ+ D G  +    +     ++ V     G  +H  +VE G LR    +   +
Sbjct: 543 NFYAESGGQIYDQGYLVKVGDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVDCHL 600

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   
Sbjct: 601 DTVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKAAMTIEQVGEA 660

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEY 683
           E    +++ +N+ V  +  N   A +  G  ++    Y D VRV+S              
Sbjct: 661 ERLTREVVRKNVQVFAKETNLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLAADPTS 720

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           + G ++S   CGGTH+  +G ++   I SE +I  GIRRI A+TG  A   L   +   +
Sbjct: 721 DAGVLNSVEFCGGTHLHQSGHMVDFVITSEEAIAKGIRRIVALTGPEALKALQKTESLEQ 780

Query: 744 SL---------ASFLKVSQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVED- 785
            +         +  +       V R+ E+ E+         +K +L    + L+  ++D 
Sbjct: 781 EVRQLREKIEASGTVTTGAKEFVRRIVELTEDVSQAVIPYVKKDELRTVLKNLKKTLDDR 840

Query: 786 -------------LSCHKIADVN----FMSHIISEV-DSKELKSVMDALQKKIQSGIIML 827
                        +   ++++ N     + H +    ++K L S +  ++K       + 
Sbjct: 841 ERAAKAAVSVEVIVRAKELSEANRDAPVLVHRLEAFSNTKALDSALKEVRKINPEQSALF 900

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           V + ++  K   L  V +  +++   A +     A  L GG GGG+P  AQ+ G +  KA
Sbjct: 901 VSVDEDAGKIFCLASVPKGAVEKGLKANEWISHVAP-LMGGKGGGKPESAQASGGSWQKA 959

Query: 886 DQAIAGVASF 895
           D+ +    SF
Sbjct: 960 DEILELARSF 969


>gi|296110668|ref|YP_003621049.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832199|gb|ADG40080.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 893

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/925 (37%), Positives = 505/925 (54%), Gaps = 66/925 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPNNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEM+GNFS G YFK+  I  AW+LLT  + + L
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKDDVIPWAWELLTSPEWYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  LY+TVY +D+EA K+W++ + +S D I  +   DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKELLYVTVYPKDQEAKKIWQEKTDISNDHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
                      E     E ERY+EIWN+VF QF              LP  +IDTGMGLE
Sbjct: 178 TSFQDLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNSQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI----VNHRVIVDHLRSSSFLI 286
           R+ +V Q    N+D DLF  +IQA+ +++    Y+ N       + +VI DH+R+ +F I
Sbjct: 238 RLVSVFQNGRTNFDTDLFLPIIQATSELSNNFVYDSNKDSDSNTSFKVIADHIRAITFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYV+RR++RRA+ + + LG     +  L+P +   M S YPE+ +    
Sbjct: 298 GDGALPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTTLVPIVGEIMKSYYPEISENTAK 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I++T+ +E++RF  TL  GL LL+ V+S   L     L+G VAFKL DT+G PL++ Q+ 
Sbjct: 358 IQKTIAAEEKRFNATLTGGLALLNDVISDVKLAGKTQLSGAVAFKLSDTYGFPLELTQEQ 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D++ FN+AL                 T  +   S  +  G    +  DL  
Sbjct: 418 ASDAGLT-VDVVGFNEAL-------------QAQRTRARAARSTDKSMGVQNAVLTDLKV 463

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            SK++      +     + +     + + A++Q       AV+  ++++VFD TPFYAE 
Sbjct: 464 PSKYVGWSETAVDGAEVVAIIGQNETGIDALLQ------TAVANSQLQLVFDTTPFYAEM 517

Query: 525 GGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           GGQ+ D G  + D   L  +I DVQ    G  +H   V     +    + L +D      
Sbjct: 518 GGQVADFGDVLNDENTLIGKIIDVQNAPNGQHIHTVEVLSD-FKLGDKVNLRVDMARHTA 576

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S NH+ATH+L  AL  ++G  + Q GS + P  LRFD TH  P++ A+L +I+  +N  
Sbjct: 577 VSKNHTATHMLDQALRNVIGGDIHQAGSLVEPKYLRFDFTHEGPVSEADLDAIDTLINAE 636

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           IA+NLPV     + E A   GA A+ G KY + VRVVS+     G  +    GGTHV++T
Sbjct: 637 IAKNLPVSWLETDIETAKKMGAVAVFGEKYGELVRVVSI-----GEFNKEFDGGTHVNAT 691

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761
            E+ L  IVSES I AGIRRIEA+TG +A +    +++ LK +A+ +K  +   V  +V 
Sbjct: 692 SELGLFKIVSESGIGAGIRRIEAVTGLQALALYKSEEKALKEIANAVKAQKLTEVPTKVA 751

Query: 762 EIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHI-----ISEVDSKELKSVMD 814
           ++  E +  Q  +   +++L     D     I  +N  S+I     +S +D   L+ V D
Sbjct: 752 DVQTELKAAQRMIESLEKQLANAAADDVFTHIETINDHSYITAKLQVSGIDG--LRQVAD 809

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPH 873
             ++   S I++L     + K ++++  + D       A DL +  A  +GGGGG GRP 
Sbjct: 810 NWKETKPSDILVLAA-DVDGKVNLIVAASPDANAAGIKAGDLIKAIAPKVGGGGG-GRPD 867

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           MAQ+GG N    D A A VA FL +
Sbjct: 868 MAQAGGKNPAGIDAAFASVADFLAE 892


>gi|260061769|ref|YP_003194849.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88785901|gb|EAR17070.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 871

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/921 (37%), Positives = 502/921 (54%), Gaps = 75/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR+ FL FF+  GH ++PS+ L+  +DPTL+F N+GM PFK  F G   P Y  V
Sbjct: 1   MTSREIRSRFLTFFKDRGHRIVPSAPLVVKDDPTLLFVNAGMNPFKEYFLGVSNPKYPRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFKE  I  AW+ LT+   +D
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTLFEMLGNWSFGDYFKEETIGWAWEFLTEVCGID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY+T+++          D+EA+  WK I  L  D+I+  +  DNFW M + GPCGPC
Sbjct: 121 RDRLYVTIFEGSSDADALERDQEAYDFWKAI--LPEDRILMGSKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E      PGS   +++    +EIWNLVF+Q+ ++       LP+  IDTGM
Sbjct: 179 SEIHVDIRPEEERRKTPGSELVNQDHPEVVEIWNLVFIQYNRKADGSLEPLPEKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD DLF  LI+   ++TG  Y     + +  RVI DH+R+ SF I
Sbjct: 239 GFERLCMVLQGVRSNYDTDLFTPLIREIGKITGKDYGQSEEDDIAIRVIADHIRAVSFTI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP N G GYV+RRI+RRA+ Y    LG  EP M  L+  L  EMG A+PEL + + 
Sbjct: 299 ADGQLPGNSGAGYVIRRILRRAIRYGFTFLGAREPFMFRLVGTLVAEMGEAFPELAEQRR 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L+E  +R E+  F KTL++GL  LD V++     + ++G  AF+LYDT G P+D+   IL
Sbjct: 359 LVENVVREEEVSFLKTLEQGLARLDAVIAETR-GKTVDGGRAFELYDTFGFPIDLTSLIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG   +D   F+ A++EQ+ R+RA S        +           A++F+GYD L  
Sbjct: 418 RERGYE-LDRQGFDAAMKEQKDRSRAASESAAEDWVK------VHPGPASEFVGYDALEA 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +++ RK                           VE   +G   ++V D TPFY E G
Sbjct: 471 RSRIRKYRK---------------------------VESKKTGTLYQLVLDTTPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GD+G   G G  + +I D +K+   I     I E          +  +D + R+Q  
Sbjct: 504 GQVGDSGHLEGSGGAVTEILDTRKENNEILH---ITEALPEDPGAEFLAVVDAERRKQTR 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LGSHV Q GS + P  LRFD +H   +   EL+ +ED VN+ IA
Sbjct: 561 RNHTATHLLHQALREVLGSHVEQKGSAVQPGYLRFDFSHFSKLKDEELRRVEDFVNERIA 620

Query: 645 QNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             L V  +  +  ++A+ +GA AL G KY D VR V          S  LCGGTH  +T 
Sbjct: 621 DGLDVEIKKGVPMQEALEAGAMALFGEKYGDTVRTVRFG------DSIELCGGTHADNTA 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I+SES++ AG+RRIEAIT    R +   ++  L+++ + LK +Q  +   VE +
Sbjct: 675 EIWHFKILSESAVAAGVRRIEAITSDAVREYFADKERVLEAIRTRLKNAQDPL-QAVESL 733

Query: 764 WEEYRKLQLIHAKRKLQLN---VEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE   L+    + K +       DL     K   V+F++  + ++D+  +K +   L  
Sbjct: 734 QEENAGLKKELERLKREQAGNLKGDLKSALDKRDGVHFLARQV-DLDASSMKDLAFQLGG 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +++  + +L+G  ++ KA + + +++ L      NA  + R   K + GGGG G+P  A 
Sbjct: 793 EVED-LFLLLGSEQDGKALLTLYISKGLAAEKDLNAGAIIRELGKHIQGGGG-GQPFFAT 850

Query: 877 SGGPNGNKADQAIAGVASFLK 897
           +GG N +   +A+   AS+L+
Sbjct: 851 AGGKNPSGIGKALEAAASYLQ 871


>gi|320109036|ref|YP_004184626.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927557|gb|ADV84632.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 889

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/914 (37%), Positives = 508/914 (55%), Gaps = 74/914 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FL FF+   H  + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y    
Sbjct: 5   SGSQIREDFLRFFETKEHRRVHSSSLVPHNDPTLLFTNAGMNQFKDVFLGAEKRSYVRAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F +
Sbjct: 65  TSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIAYAWELLTAAEWFGI 124

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D+ +LY+T+++       D+EA + W + +G+  ++I  ++  DNFW M ETGPCGPCSE
Sbjct: 125 DKSKLYVTIFEGDAQVPRDDEAEQFWIE-AGVPKERIFEMSAKDNFWQMGETGPCGPCSE 183

Query: 175 IFFDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDT 226
           I++D G      PG       + +RY+EIWNLVFMQF++         +   LPK SIDT
Sbjct: 184 IYYDLGLEAADEPGTDKPFPLDEQRYVEIWNLVFMQFDRMIDAATGGAQLTPLPKPSIDT 243

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGLER+A VLQ  T+N++ DLF  LI  + +++G         + ++I DH R+++FLI
Sbjct: 244 GMGLERIAAVLQGVTSNFETDLFTPLIAKAAELSGATDL--TSSSLKIIADHARAATFLI 301

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           +DG++P NEGRGYVLR+I+RR + + RLLG  +P M  ++ A+  EM  AYPELI +   
Sbjct: 302 SDGVIPLNEGRGYVLRKILRRGIRHGRLLGQEQPFMHEMVYAVRDEMQVAYPELIDSAER 361

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + + +E+++F +TL  G       LS +  + + +G  AF+LY+T G+PLD M D   
Sbjct: 362 VAKVVLAEEQQFARTLQLG-------LSQMTNETLSSGAAAFRLYETFGMPLDFMTDAAR 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G+   D+  F  A EE++ RARA   G    +    +  L      T F+GY  LR  
Sbjct: 415 DAGIE-FDLPGFEAAKEEEQQRARASWRGGSQKSASPAFREL----AKTDFLGYGGLRAD 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V A+V+ G  V+    G + EVV D T FYA++GG
Sbjct: 470 GV----------------------TVLALVKDGVGVQALHPGDEGEVVLDATSFYADSGG 507

Query: 527 QLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           Q+GD G        G   ++    K  +G+F H  +V+R  +     L   ++ + R   
Sbjct: 508 QVGDVGWLYPTDHTGALAEVKGCTKPVQGVFAHKVVVKRD-ISVGDRLDAVVNGEVRSAT 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ THLLH AL  +LG+HV Q GS +    LRFD +H   I   +L+ IED VN  +
Sbjct: 567 IRNHTGTHLLHAALREVLGTHVKQAGSLVNSARLRFDFSHFAGIAPEDLQEIEDIVNAQV 626

Query: 644 AQNLPVVTRI-MNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
             N  V T   +  + A+    A AL G KY D+VRVV +     G  S+ LCGG H  +
Sbjct: 627 LGNTRVETFEDVPIDVAVHEFKATALFGEKYGDKVRVVKI-----GDFSTELCGGIHTKA 681

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL---KVSQGN-VV 757
           TGEI LL +V ESS  +GIRR+EA+TG  +        +  +     +    +     + 
Sbjct: 682 TGEIGLLKLVGESSAASGIRRVEAVTGTGSLKEFRRDFDVARVATQVIGGSSLPPAEALQ 741

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSV 812
            ++    EE +KL+    + +++      +       ++  +  ++  +S +D  +++ +
Sbjct: 742 QKLSAQDEELKKLRRELDQARMKSASSATANAAESAVEVKGIKVLAQRVSGLDRNQMRQL 801

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
           +D L+ +I  G+++L   +++ K +++  VT+DL  +  A  +    A  +GG GG GRP
Sbjct: 802 VDNLRTQIGEGVVVLGMATEDGKVALIAGVTKDLTSKVQAGKVVGALAAKVGGKGG-GRP 860

Query: 873 HMAQSGGPNGNKAD 886
            +A++GG + ++ D
Sbjct: 861 DLAEAGGSDPSQLD 874


>gi|125987341|ref|XP_001357433.1| GA12250 [Drosophila pseudoobscura pseudoobscura]
 gi|54645764|gb|EAL34502.1| GA12250 [Drosophila pseudoobscura pseudoobscura]
          Length = 966

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/970 (31%), Positives = 465/970 (47%), Gaps = 87/970 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R  +L FF++  H  + SSS IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 5   TAKEVRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQYKPIFLGTADPNSEMSK 64

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT  
Sbjct: 65  WVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTNR 124

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +  DE        E  +LW  + GL  + I+  +  DNFW M ETGPC
Sbjct: 125 LHLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID GMG
Sbjct: 184 GPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +V+Q K +NYD DLF  L +A +  TG                 + +RV+ DH R
Sbjct: 243 FERLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHAR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 303 TITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGDAFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I + +  E+ +F KTL RG  LL+  +  LG   I+ GDVA++LYDT+G P+D
Sbjct: 363 VKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYGFPVD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   + L  ID+  +  A    +  +   S G G+   E+I   +       +  G
Sbjct: 423 LTQLMAEEKSLE-IDMAGYEAA----KQNSYVLSQGKGASKIEEINLDVHAISQLQE-QG 476

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S F  +   V  ++         +S + A+  + + V E  +GQK  +V D+T 
Sbjct: 477 VPPTNDS-FKYKYEAVSEERDSAYNYQECTSKIVALRFENQFVNEISNGQKAGIVLDKTN 535

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L+    L L ID 
Sbjct: 536 FYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDE 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E 
Sbjct: 595 ERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAKTEQ 654

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEYED 685
              D++ +N+P+  +      A    G  ++    Y D VRV+S            + E 
Sbjct: 655 LTKDMVYKNVPIYAKESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDAEA 714

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   +   +   + +
Sbjct: 715 GEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQEI 774

Query: 746 ASFLKV---------SQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNVEDLS- 787
              LK             + V  + E+ E+         +K ++ +  + L+  ++D   
Sbjct: 775 VK-LKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDDKER 833

Query: 788 -----------------CHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829
                            C      N +   +   ++ K L + +  ++ ++     M   
Sbjct: 834 SLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAMFFS 893

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N ++ ++
Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDRVEE 952

Query: 888 AIAGVASFLK 897
            I     F +
Sbjct: 953 IIQLATKFAQ 962


>gi|15618801|ref|NP_225087.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836425|ref|NP_300949.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752144|ref|NP_445511.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242254|ref|NP_877195.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|6707750|sp|Q9Z714|SYA_CHLPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4377211|gb|AAD19030.1| Alanyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189887|gb|AAF38754.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979266|dbj|BAA99100.1| alanyl tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|33236765|gb|AAP98852.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|269302680|gb|ACZ32780.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 872

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/889 (37%), Positives = 500/889 (56%), Gaps = 47/889 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + ++IR+ FL+F+    H +LPSS + P NDP+++FTN+GM  FK+IF  +EK  Y  
Sbjct: 1   MLS-NTIRSNFLKFYANRHHTILPSSPVFPHNDPSILFTNAGMNQFKDIFLNKEKVSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK  AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKAEAIAFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +   +Y TV+++D+EAF LW   + L  D+I R+T  DNFWSMA TGPCG CSE+ FD+G
Sbjct: 120 NPEGIYATVHEKDDEAFALW--EAYLPTDRIFRLTDKDNFWSMANTGPCGYCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                   P    +GER++E WNLVFM+F + ++     LP   +DTG GLER+ +++  
Sbjct: 178 PSFGNASSPLDDTDGERFLEYWNLVFMEFNRTSEGSLLALPNKHVDTGAGLERLVSLIAG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRG 298
               ++ D+ + LI  +EQ++G  Y  ++     RVI DH+RS SF IADG+LP N  RG
Sbjct: 238 THTVFEADVLRELIAKTEQLSGKVYHPDDSGAAFRVIADHVRSLSFAIADGLLPGNTERG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RR++ Y R LG+  P +  ++P+L   MG AYPEL  +   I++ L  E+E F
Sbjct: 298 YVLRKILRRSVNYGRRLGFRNPFLAEIVPSLADAMGEAYPELKNSLSQIQKVLTLEEESF 357

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTLDRG  LL  VL        ++G+ AFKL DT+G+P+D +  +      + +D+ +F
Sbjct: 358 FKTLDRGGNLLQQVLKSSSSSSCISGEDAFKLKDTYGMPIDEISLLAKDYDYS-VDMDTF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           ++  +E + R+R + +    GT+E I+  L   +  ++FIGYD L    F          
Sbjct: 417 HKLEQEAKERSRKNVVQS-QGTSESIYNEL---HLTSEFIGYDHLSCDTF---------- 462

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++AI+ +  IV      Q+  +V   +PFYAE GGQ+GD+G      
Sbjct: 463 -------------IEAIISKDHIVSSLQEKQEGAIVLKVSPFYAEKGGQVGDSGEIFCSE 509

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               +T       G+ VHH  + +G L  E ++   ++   R++++ NH+A HLLH AL 
Sbjct: 510 GTFIVTHTTSPKAGLIVHHGRISQGSLTVEAAVTAQVNRYRRKRIANNHTACHLLHKALE 569

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH + I+  +L  IE  VN+ I +N PV  R     D
Sbjct: 570 ITLGDHIRQAGSYVDDTKIRLDFTHPQAISPEDLLCIETLVNESIRENEPVDIREALYSD 629

Query: 659 AIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            + S       G KY+D VRVVS        HS  LCGGTH  +TG+I    I  E ++ 
Sbjct: 630 VMNSSEIKQFFGDKYSDVVRVVSAG------HSHELCGGTHAEATGDIGFFRITKEHAVA 683

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QL 772
            GIRRIEA+TG++A + +  Q E L+ +A+ L+V +  +V R+    +E ++      +L
Sbjct: 684 MGIRRIEAVTGEKAEATVHQQSEVLEEIATLLQVPRDQIVSRLTATLDERKQQDKRLNEL 743

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            ++  + +L+    +CH+   +  + H ++E ++  L+     L ++I   +I L    K
Sbjct: 744 ENSLIQTKLDKLIHNCHQRQGITCLVHHLAEHENHRLQQYAQCLHQRIPEKLISLWTTEK 803

Query: 833 EKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
             K  VL  V++DL     +A DL +       GG  GG+   AQ   P
Sbjct: 804 NGKYIVLSRVSDDLITQGVHAQDLLKAVLTPC-GGRWGGKDQSAQGSAP 851


>gi|257066429|ref|YP_003152685.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798309|gb|ACV28964.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 870

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/919 (34%), Positives = 506/919 (55%), Gaps = 72/919 (7%)

Query: 1   MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R+ +L FF  + GH LL S  LIP +D +L+  N+GM P K  FTG++K  
Sbjct: 1   MKNLGMNELRSKYLNFFGNEKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A++ LTKE
Sbjct: 61  NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYEFLTKE 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++ +  +++TV+ EDEEA+ +W    GL +++I+R    DNFW + E GPCGPCSEIF 
Sbjct: 117 LEISKDDIWVTVFKEDEEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFV 175

Query: 178 DQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D+G           PG +++ +R++E+WNLVF QF + ++     L   +IDTGMGLER+
Sbjct: 176 DRGAGRAIDENDNRPG-NDDSDRFMEVWNLVFTQFNKDSQGNYTPLAHPNIDTGMGLERI 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGIL 291
           A VLQ+K N +++D+   +I   E+++  KY+    + V+ RVI DH ++ +FL  DG+L
Sbjct: 235 AMVLQDKDNIFEVDVMAAIISEIEKLSNKKYKESKKDDVSIRVIADHAKAMTFLTCDGVL 294

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRR++RRA  + +LLG     + +++  +       Y EL   +  I+  +
Sbjct: 295 PSNEKRGYVLRRLIRRAYRHGKLLGIEGEFLTNIVDKVIDTYKVEYDELDANREKIKSVI 354

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R E+ERF KT+D+GL  L+ ++S +   K+++L+G  AFKLYDT+G PLD+ ++IL  + 
Sbjct: 355 RDEEERFQKTIDQGLERLESLISKMEKIKNKVLDGKEAFKLYDTYGFPLDLTKEILEEKN 414

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D  +FN  ++ Q+  AR         + + I     +    T F+GYD L      
Sbjct: 415 L-DVDEKTFNDEMQIQKQTAREARKKDAGWSLDNINT---DGIAKTSFVGYDNLD----- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             + + +  + ++   V     G    V+ D+T FYAE GG++ 
Sbjct: 466 ------------------IKARILNLFKENSEVSSLSEGDNGIVISDKTSFYAEGGGEVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG  + D  + ++ DVQK+ + I+ H+  V  G +         +D   R  +  NHSA
Sbjct: 508 DTGLILSDSFKARVIDVQKQKD-IYFHYIEVVEGAVFVGDDAQFKVDRNKRLAIQRNHSA 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LG  V Q GS +  + LRFD +H++ +T  E+  +E+ VN  I +   V
Sbjct: 567 THLLDQALRDVLGEDVKQAGSLVDENKLRFDFSHNRALTKEEIDKVEEIVNREIVKQELV 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              I++ +++   GA  L   KY D+VRVVS+     G +S  LCGG HV++T +I++  
Sbjct: 627 TKEIVDYKESQKMGAIGLFEDKYKDKVRVVSM-----GDYSIELCGGCHVNNTSDILMFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I  ESS+ AG+RRIEA+TG++A  +L  +  KL  +A  L  +  N+  R++ + +E  K
Sbjct: 682 IKQESSVSAGVRRIEALTGKKAFEYLNDRANKLDQVAERLNTNTNNITNRIDSLEKEIEK 741

Query: 770 LQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           L+  +++ K   + +          +I  +N +          EL+   + ++  I + I
Sbjct: 742 LKSENSRLKSTNSSDIVSELKEDVKEIKGINLLVKKFENASMDELRDYENRIKSSIDNLI 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV-------LGGGGGGGRPHMAQS 877
           I+   +S   K    + V + L D++NA  + R  A++                 + AQ+
Sbjct: 802 IVFASVS--DKIVFTVSVDDKLTDKYNAGKIVRQIAQITGGNGGGKK--------NFAQA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG + +K  +A+  V+  +
Sbjct: 852 GGKDISKLKEALEKVSEII 870


>gi|116670825|ref|YP_831758.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|205829979|sp|A0JX88|SYA_ARTS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116610934|gb|ABK03658.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24]
          Length = 892

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/925 (35%), Positives = 490/925 (52%), Gaps = 65/925 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+  Y  
Sbjct: 1   MKS-QEITKRWIDFFVSKGHTAVPSASLVSS-DPSLLFTVAGMVPFIPYLTAREEAPYNR 58

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
            T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT     
Sbjct: 59  ATSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTSVDD 114

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + L   +L++TVY+ED+EA +LW K +G+ A++I R+   DN+WS  + GP GPCSEI
Sbjct: 115 GGYGLPPEKLWVTVYEEDDEAEQLWLKNTGMPAERIQRMGKADNYWSTGQPGPAGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           ++D+G    G   G   +  RY+EIWNLVFMQ++  N + +        LPK +IDTG+G
Sbjct: 175 YYDRGPSY-GVEGGPIADENRYVEIWNLVFMQYQIDNVRSKVDFDITGELPKKNIDTGLG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           +ER+A +LQ+  N Y+ D  + +I  +  ++G +Y            + V  RV+ DH+R
Sbjct: 234 MERLAMILQDVENMYETDQVRPVIDKAAALSGKEYTSAESADDPHHTDDVRMRVVADHIR 293

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  LIADG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLPA    M   YP +
Sbjct: 294 SALMLIADGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEKACLPDLLPASRDAMKGVYPVV 353

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLD 399
                 I     +E++ F +T+  G   L+  +       + L+G  AF L+DT+G P+D
Sbjct: 354 ETDFDRISRIAYAEEKAFLRTIASGTARLEDAVKDSKAAGQPLSGADAFALHDTYGFPID 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  ++    GL  +D   F + + EQR RA+A + G      +   F      G T F G
Sbjct: 414 LTLEMAEEAGLK-VDEPEFRKLMLEQRQRAQADAKGKKGSHADLSAFQELLAEGETVFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y  L G                        S V+ I+  G  V +A +G+++E+V  +TP
Sbjct: 473 YTELAG-----------------------ESKVRGILSGGRKVSQASTGEEIELVLAETP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAEAGGQ  DTG   GDG  +++ DVQ+  +G+ VH AIV  G +  +  +   +D + 
Sbjct: 510 FYAEAGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVQAAVDRER 569

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+ TH++H AL  ILG    Q GS      LRFD    + +++A    IE+  
Sbjct: 570 RHSAEQAHTGTHIVHAALHQILGPEALQRGSYNKAGYLRFDFAWGEGLSAATRSEIEEVS 629

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  N  V T++M   +A A GA AL G  Y + VRVV ++    G  S  LCGGTHV
Sbjct: 630 NLAIRNNFQVETKVMALAEAKALGAMALFGENYGNEVRVVEID----GAWSRELCGGTHV 685

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           ++T  I  L ++ + S+ +G RR+EA  G  A  HL  +   +  L   LKV  G +  R
Sbjct: 686 ANTSLIGSLSLLGDQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTEMLKVPSGLLADR 745

Query: 760 VEEIWEEYRKLQLIHAK-RKLQLNVEDLS----CHKIADVNFMSHIISEVD-SKELKSVM 813
           +     + + ++    + RK QL              A V  ++H   +V  + +L+ + 
Sbjct: 746 IATTLTKLKTVEKELERLRKEQLTAAAAQLVGTAKDAAGVKVIAHDAGQVSGADDLRGLA 805

Query: 814 DALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             L+ ++ S    + + G+S ++   ++            A  L RL+A +LGGGGG G+
Sbjct: 806 LDLRTRLGSEAAAVAVAGVSNDRPVILVATNEAARAAGVKAGALVRLAAGILGGGGG-GK 864

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
             +AQ GG +  K   A+  V   +
Sbjct: 865 DDVAQGGGTDAAKVPAALTAVVDAI 889


>gi|15827174|ref|NP_301437.1| alanyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229652|ref|YP_002503068.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|20532262|sp|Q9CCT0|SYA_MYCLE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13092722|emb|CAC30020.1| alanyl-tRNA synthetase [Mycobacterium leprae]
 gi|219932759|emb|CAR70605.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 908

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/943 (34%), Positives = 484/943 (51%), Gaps = 83/943 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF--- 118
           T++QKC+R      D+D+VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT  F   
Sbjct: 60  TSIQKCIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADG 115

Query: 119 --DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  RL+ TVY +D+EA  LW++I+GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEFGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------VNHRVIVDHLRSS 282
           +ER+A VLQ   N Y+IDL + +I          Y+  N        V +R+I DH R++
Sbjct: 234 VERIALVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPENEDTNHADNVRYRIIADHSRTA 293

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           + LI DG+ P N+GRGYVLRR++RR +  A+LLG   P++  L+  +C  MG AYP L+ 
Sbjct: 294 AILIGDGVSPVNDGRGYVLRRLLRRIIRSAKLLGIDSPIVGDLMATVCNAMGRAYPGLVT 353

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDI 400
               I     +E+  F +TL  G  L D V+         ++ G  AF L+DT+G P+++
Sbjct: 354 DFDRINRIAVAEETAFNRTLTSGSKLFDDVVGATVASGSTVVAGLDAFTLHDTYGFPIEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D   F++ + +QR RA+  +        +   +      G T+F G+
Sbjct: 414 TLEMAAEAGLT-VDEKGFHELMLQQRQRAKVDAAARKQAHVDLTAYRELVDAGPTEFTGF 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAVSGQ-----KVE 512
           D L                          + +  I  +G+   +V  AV GQ     +VE
Sbjct: 473 DEL-----------------------TTEARILGIFVEGKRVPVVAHAVRGQAGITNRVE 509

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ + VH   +E G     
Sbjct: 510 LVLDRTPLYAESGGQIADAGTISGIGAGASSRAAVTDVQKIAKTLHVHRVNLESGEFVEG 569

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++V  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T
Sbjct: 570 DTVVAVVDPGWRRGAAQGHSGTHIVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGSLT 629

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +   IE+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG 
Sbjct: 630 GEQRTQIEEVTNEAVQADFEVHTFTEKLDTAKAMGAIALFGEAYPDEVRVVEM----GGP 685

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S  LCGGTHV +T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS 
Sbjct: 686 FSLELCGGTHVHNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASS 745

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK------IADVNFMSHIIS 802
           L+V    V  RV  + E  +  +    + + Q NV+  +         I +V  +   +S
Sbjct: 746 LQVPSEEVHARVATLVERLKAAEKELERAR-QANVQAAATKAAAGAEWIGNVRVVVQRMS 804

Query: 803 E-VDSKELKSVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDL 855
             +   +L+ ++  ++ K+ S   ++ L+ ++ +         +       D    A DL
Sbjct: 805 GPIAPDDLRFLVGDIRGKLGSDPAVVALIAVTSDGPTATVPYAVAANPAAQDLGIRANDL 864

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               A V+  G GGG+  +AQ  G +    D A+  V + + +
Sbjct: 865 VEQLAMVV-DGRGGGKADLAQGSGKDPTGIDAALDTVRAQIAQ 906


>gi|116617672|ref|YP_818043.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272127|sp|Q03YQ2|SYA_LEUMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116096519|gb|ABJ61670.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 893

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/924 (36%), Positives = 495/924 (53%), Gaps = 68/924 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAEIRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE+AI  AW+LLT  + + L
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPEWYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D+EA K+W++ + L    I  +   DNFW + E GP GP SEIFFD+G
Sbjct: 121 DAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
                      E     E ERY+EIWNLVF QF              LP  +IDTGMGLE
Sbjct: 178 SSFQDLPDDDPEMYPGGENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI----VNHRVIVDHLRSSSFLI 286
           R+ +V Q    N+D DLF  +I+A+E+++    Y+ +       + +VI DH+R+ +F I
Sbjct: 238 RVVSVFQNGRTNFDTDLFLPIIRATEKLSNQFTYDDSQDSEVNTSFKVIADHIRAITFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYV+RR++RRA+ + + LG     + +L+P +   M S YPE+      
Sbjct: 298 GDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEVKANTAK 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I++T+ +E++RF  TL  GL LL+ V+    K     ++G  AFKL DT+G PL++ Q+ 
Sbjct: 358 IQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGADAFKLSDTYGFPLELTQEQ 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  +N  L+ QR RARA      S   +     L +    ++++G+    
Sbjct: 418 AEDAGLT-VDVDRYNDELQAQRVRARAARSNTKSMGVQNAV--LTDLRVDSKYVGWSQTE 474

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS----GQKVEVVFDQTPF 520
            +                      + IV  I +  + V+  +        V+V FD TPF
Sbjct: 475 VNH---------------------AEIVAIIGEDEQGVDALLDNADVDATVQVAFDVTPF 513

Query: 521 YAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ D G  +     +   +TDVQ    G  +H   V          + L +D  
Sbjct: 514 YAEMGGQVPDFGDVLNTNGDVIAHVTDVQTAPNGQHIHTVDVISS-FTLGDKVDLKVDMA 572

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
               +S NH+ATH+L  +L  +LG  V Q GS + P+ LRFD  +  P++S +L  IE  
Sbjct: 573 RHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDKIESM 632

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +N  IA+NLPV     + E A   GA A+ G KY D+VRVVS+     G  +    GGTH
Sbjct: 633 MNQEIAKNLPVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFDGGTH 687

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVV 757
            +ST E+ L  IVSES I AG+RRIEA+TG +A S    Q++ LK +A+ LK  +  +  
Sbjct: 688 ANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKLTDAP 747

Query: 758 GRVEEIWEEYRKLQL--IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSV 812
            +V ++  + R +Q      + KL         + +  VN  ++I +++       L+ V
Sbjct: 748 EKVYDLQADLRTVQRHAESLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGMDGLRQV 807

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            D  ++   S +++L  ++ EK + ++    +       A +L +  A  +GGGGG GRP
Sbjct: 808 ADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHIGGGGG-GRP 866

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
            MAQ+GG        A A V++FL
Sbjct: 867 DMAQAGGKKPAGIPDAFAAVSAFL 890


>gi|6176442|gb|AAF05593.1|AF188718_1 alanyl-tRNA synthetase [Drosophila melanogaster]
          Length = 966

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/973 (31%), Positives = 471/973 (48%), Gaps = 89/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   LLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 QRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L   S++           G        + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLSMPSKRALVPQPYQGRVGADDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q 
Sbjct: 421 VDLTQLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQL 472

Query: 458 IGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +   +   K     V  ++         +S + A+  + + V E  SGQK  +V D
Sbjct: 473 QEQGVPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLD 532

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           +T FYAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L 
Sbjct: 533 KTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      + S+    
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMPSSRCPR 651

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
                 +++ +N+P+  +      A    G  ++    Y D VRV+S            +
Sbjct: 652 RSSLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   
Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771

Query: 743 KSLASFLKVSQGN---------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVED 785
           + +   LK +  N          V  + E+ E+         +K ++ +  + L+  ++D
Sbjct: 772 QEIVR-LKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDD 830

Query: 786 LSCHKIADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIM 826
                 A V+                 + ++ ++++    K L + +  ++ ++     M
Sbjct: 831 KERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAM 890

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            + +  + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K
Sbjct: 891 FLSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEK 949

Query: 885 ADQAIAGVASFLK 897
            D+ +   + F +
Sbjct: 950 VDEIVQLASKFAQ 962


>gi|89897947|ref|YP_515057.1| alanyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123483857|sp|Q255X6|SYA_CHLFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|89331319|dbj|BAE80912.1| alanyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 875

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/888 (37%), Positives = 497/888 (55%), Gaps = 46/888 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H ++PSS + P NDP+++FTN+GM  FK+IF  +E   Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRHHAIVPSSPIFPHNDPSILFTNAGMNQFKDIFLNKETVSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK++AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKKQAIAFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW++   L +++I R+T  DNFWSMAETGPCG CSE+ FD+G
Sbjct: 120 DPNLIYATVHEKDDEAFALWEQ--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRG 177

Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                   P    +GER++E WNLVFM+F +        LP   +DTG GLER+ +++  
Sbjct: 178 ANFGKATSPLEDTDGERFLEYWNLVFMEFNRTADGSLLSLPSKHVDTGAGLERLVSIISG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ + LI  +E+++G KY  +  +    RVI DH RS SF IADG+LP N  R
Sbjct: 238 TNTVFEADVLRLLISKTEELSGKKYHEDEALGAAFRVIADHTRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RR++ Y + LG+T+P +  ++P+L   MG AYPEL  +   I+E + +E+E 
Sbjct: 298 GYVLRKILRRSVNYGKRLGFTKPFLAEIVPSLVDSMGEAYPELRLSLSQIQEVMTTEEEN 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           + K+L RG  LL  VL       +++G+ AFKL DT+GLPLD +  +      + +D+ +
Sbjct: 358 YFKSLHRGGNLLQQVLKSSSTSSLISGEDAFKLKDTYGLPLDEIALLAKDYNFS-VDLET 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q  +E + R+R + +      T+ I+ SL      ++FIGY+ L    F         
Sbjct: 417 FYQLEKEAKERSRKN-IAKSQNATDAIYDSLS-LGENSEFIGYNDLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++AIV +G+ V      +K  ++   TPFYAE GGQ+GD+G     
Sbjct: 466 --------------IEAIVSEGKQVSSLQEKEKGALILKSTPFYAEKGGQIGDSGEIFCS 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       GI +HH  V +G L    ++   ++   R+++S NH+  HLLH AL
Sbjct: 512 DGTFVVSHTTSPKAGIVIHHGEVSQGQLSQAQAVTTQVNCIRRKRISNNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH K I+  +L SIE  VN+ I +N  V TR     
Sbjct: 572 EMTLGDHIRQAGSYVDDSKIRLDFTHPKAISPEDLASIELLVNEKIRENHQVETRNTLYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D + S       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++
Sbjct: 632 DVVNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHAEFTGDLGYFRILKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA+TG+ A       +E L  +A  L+  +  ++ +++ I EE ++     ++
Sbjct: 686 ATGIRRIEAVTGKEAEILAHQDNEDLNEIALILQSPRDQILHKLQNILEEKKEQAKQISE 745

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L    L      C ++ DV+F+ H + E +S  L+   + L +KI S +I L    
Sbjct: 746 LETKLIHSLLDKLIDHCQQVNDVSFLIHHLPESESHRLQQYANCLHQKIPSRLISLWTTQ 805

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K  K  +   +++DL+     A DL ++      GG  GG+   AQ  
Sbjct: 806 KNGKYIIFSRISDDLIKQGLQAKDLLKILLAPC-GGRWGGKDIFAQGS 852


>gi|319442138|ref|ZP_07991294.1| alanyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 911

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/939 (34%), Positives = 482/939 (51%), Gaps = 79/939 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F+  + K GH  +PS+SLI  +DP L+F N+GMVPFK  F G++ P +   
Sbjct: 1   MQTHEIRERFINHYVKAGHAEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGEQNPPFPNG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISHAWSLLTDPVD 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD+ RL++TVY +D+EA ++W +  G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGFGLDKDRLWVTVYLDDDEAAQIWHEKIGIPEERIQRLGMADNYWSMGVPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGM 228
           I++D+GE   G   G   +  RYIE+WNLVFMQ E+       + +    LPK +IDTGM
Sbjct: 176 IYYDRGEEY-GEYGGPVVDDTRYIELWNLVFMQNERGKGIGKDDFEIVGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-------------------GNNI 269
           G+ER+A +LQ   N Y+ DL   +I+ +E +TG  Y                      + 
Sbjct: 235 GVERVACILQGVENVYETDLLAPVIKVAEDLTGATYGRSEQLIKAGDTESADYHAAHTDD 294

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
           +  RVI DH R+   LI DG+ P NEGRGY+LRR++RR +  ARLLG T   M  L+  +
Sbjct: 295 IRFRVIADHCRTGLMLILDGVTPGNEGRGYILRRLLRRIIRSARLLGATGVTMEKLMDTV 354

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVA 387
            + M  +YPE+      I      E+  F KTL+ G  L + V + +    +  L+GD A
Sbjct: 355 RSTMTPSYPEIADNWERIRAVAVGEETAFLKTLESGTRLFETVAAQVKGSGLTELSGDAA 414

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F L+DTHG P+D+  ++    GL  +D   F+  + EQ++RA+A +        +   + 
Sbjct: 415 FSLHDTHGFPIDLTVEMAAESGLT-VDKEGFDARMAEQKARAKADNRAKKHDHADVAVYR 473

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
                  T F+GYD                              +  IV  G +VE A  
Sbjct: 474 PFVDNHPTVFLGYDSTE-----------------------AEGSILGIVAGGALVERAGE 510

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           GQKV+++ DQTPFYAEAGGQL D G   G G    + DVQK  + +++H+  V  G    
Sbjct: 511 GQKVQLILDQTPFYAEAGGQLADRGQITGTGGAATVDDVQKTGKKVWLHNVTVTGGEFAV 570

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +  T+D+  R +    HS TH++H AL  +LG    Q GS   P  LRFD  + + +
Sbjct: 571 GQRVTATVDHTWRHKARQAHSGTHMIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYGEQL 630

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T+ +L+ IE   N+ +  +  V T   + ++A A GA AL G  Y   VRVV +    GG
Sbjct: 631 TADQLRRIELIANEAVDADYQVNTIETSLDEAKAMGAMALFGENYGAEVRVVEI----GG 686

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S  LCGG HV  + +I  + ++ ESS+ +G+RRIEA +G  +   L  Q +   +LAS
Sbjct: 687 PFSMELCGGIHVEHSSQIGPVAVLGESSVGSGVRRIEAYSGVDSFRFLSDQHKLSGALAS 746

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVED--LSCHKIADVNFMSHII- 801
            L++    +  RVE +     + +   A+    +L   V D  L    + D+  ++  + 
Sbjct: 747 QLRIPSEELPDRVEALTTRLNEAEKRIAQFRTAELSAKVGDYLLQATMVGDIRVVAARVP 806

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKE----KKASVLIVVTEDLLDRFNAVDLAR 857
             + + +L+++    + +  S   ++  IS +    K   +       +     A D+ +
Sbjct: 807 DGIVAGDLRTLATEAKSRAGSDAGVIFFISSDPESGKVPFIAAATDAAVAAGVKAGDIIK 866

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A  + GG GGG+P MAQ  G +    D A+  V   +
Sbjct: 867 TVAPYV-GGRGGGKPAMAQGSGSDAAGIDAAVKAVRDIV 904


>gi|311113673|ref|YP_003984895.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310945167|gb|ADP41461.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 893

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/923 (35%), Positives = 497/923 (53%), Gaps = 65/923 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I   ++EFF+K GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQ
Sbjct: 5   EISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDL 120
           KC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT       + L
Sbjct: 64  KCIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDKGGYGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL++T+Y+ D EAF +W K  G   ++I R+   +N+WS  + GP GP SEIF+D+G
Sbjct: 120 DPERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGLERMA 234
               G   G + + +RYIEIWNLVFMQ+++         +    LPK +IDTG+G+ER+A
Sbjct: 180 PAY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGVERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFL 285
            +LQ   N Y+ D  + ++ A+ +++G KY G          + V  RV+ DH+RSS  L
Sbjct: 239 MLLQGVENFYETDQVRPVLDAASKLSGKKYHGSESPEDPGYEDDVRMRVVADHIRSSLML 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           IADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +     
Sbjct: 299 IADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVADDFE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F  T++ G   L+  ++   KD    ++G  AF L+DT+G P+D+  +
Sbjct: 359 RISRIAYAEEKAFLHTIETGTERLEEAVATAKKDGSNSVSGAEAFALHDTYGFPIDLTLE 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G+  +D  +F + + EQR RA+A +        +            + F GY  L
Sbjct: 419 MAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGSFADLSELRKLVDERGSIFTGYTEL 477

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                         + ++A+++ G  V  A +G K+EVV D+TPFYAE
Sbjct: 478 RT-----------------------ETHLRALLKDGVSVPVAKAGDKIEVVLDETPFYAE 514

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G       +V  +D Q RR  
Sbjct: 515 GGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQRRRDG 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  N  I
Sbjct: 575 EKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVANLAI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V+ R M   +A A GA +L G KY + VR+V +    GG  S  LCGGTHV ++ 
Sbjct: 635 RDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHVGTSS 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI  L +++E S+ +G RR+EA+ G  +  HL  +   +  L   +KV S   +  ++ +
Sbjct: 691 EIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPEKINQ 750

Query: 763 IWEEYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
              + +  +    K    KLQ     L  +   I  V  ++H   E+D+  ++S+   L+
Sbjct: 751 TLAKLKSAEKELEKLRREKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLALDLR 810

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +  S   ++          V++V T +        A  L RL+A +LGGGGG G+  +A
Sbjct: 811 SRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAAGILGGGGG-GKDDVA 869

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG + +K  +A+  + + + +
Sbjct: 870 QGGGQDASKVSEALDAIRNAIAQ 892


>gi|281423902|ref|ZP_06254815.1| alanine--tRNA ligase [Prevotella oris F0302]
 gi|281401990|gb|EFB32821.1| alanine--tRNA ligase [Prevotella oris F0302]
          Length = 887

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/934 (34%), Positives = 492/934 (52%), Gaps = 89/934 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M   + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P    
Sbjct: 1   MMTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     
Sbjct: 61  RRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLH 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L+   LY+TV++         D+EA   W K   + AD II    +DNFW M +TGPCGP
Sbjct: 121 LNPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           C+EI  D    + +    G    +++  + IEIWN+VFMQ+ ++       LP   IDTG
Sbjct: 179 CTEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNH 272
           MG ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      +  
Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  LLP L  
Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVR 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFK 389
           EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+
Sbjct: 359 EMGQAYPELPAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTELDGTSAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  ++
Sbjct: 419 LFDTYGFPLDLTELICREHGYT-VDEKGFNEEMAKQKARARNAAV-----VENGDWEVIR 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G   F+GYD    +  +   RKV  +K                              
Sbjct: 473 E--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   ++I D  K+     +H  IV++     + 
Sbjct: 504 -YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDT-KRENNQSIH--IVKQLPKDLQA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  +LG HV Q GS + P  LRFD +H + +T 
Sbjct: 560 EFMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN +I ++ P+        E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H  STG I    I+SESS+ AGIRRIEA+TGQ     +    + +  L S 
Sbjct: 675 -SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSM 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISE 803
              +  ++   +++   E+ +++    K + Q      E+L      +  V  +  ++  
Sbjct: 734 FN-NSKDLKATLKKFIGEHDEMRKEIEKFQAQAVERTKEELLKRAQNVNGVQVIKAVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAK 861
           ++    K +   L++ I   +++++G +   K  + ++ ++D++     NA  + R +AK
Sbjct: 792 LEPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           ++ GG GGG+PH AQ+GG N +    A+  V   
Sbjct: 852 LIQGG-GGGQPHYAQAGGKNLDGISAAVDKVIEL 884


>gi|288918208|ref|ZP_06412563.1| alanyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288350378|gb|EFC84600.1| alanyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 880

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/911 (35%), Positives = 480/911 (52%), Gaps = 52/911 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G     +   
Sbjct: 1   MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFVGDLTAPWSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D++NVGRT RH +FF+M GNFSFG YFK  AI  A++L+T+ +  +
Sbjct: 60  TSVQKCVRTV----DIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELVTEGYGFN 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAESIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLERMATV 236
              G   G   + +RY+EIWNLVFMQ+ +    E        LP  +IDTGMGLERMAT+
Sbjct: 174 EY-GRDGGPEADEDRYLEIWNLVFMQYARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  +    V  RV+ DH R+++ LI+DG+ P+N
Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGARYGADPAADVRLRVVADHTRTAAMLISDGVSPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  LL  +   MG  YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMAELLAEVRQAMGPIYPELVDQAEAITAVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  
Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSAQLSGESAFRLHDTYGFPIDLTIDMAADAGLT- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +    G T F GY  L        
Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTELTRE----- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +GV  IV   +  G        G++V +V D TPFYAE GGQ  D 
Sbjct: 467 --------------SGVVGIVG--IGDGSSRVAVGEGEEVGIVLDTTPFYAEGGGQEADL 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    DG   ++ DVQ+    + +H   V RG LR    + + +D + RR +S +H+ATH
Sbjct: 511 GVIRFDGGECEVLDVQRPVADLVMHRVKVLRGELRVGADVAVEVDVERRRAVSRSHTATH 570

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN++  ++L V  
Sbjct: 571 LVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEVALRDLEVRW 630

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +  + +A   GA AL G KY D+VRVV     D G ++  LCGGTHVSS+ ++  + ++
Sbjct: 631 YVTTQAEARRLGAMALFGEKYGDQVRVV-----DVGDYARELCGGTHVSSSAQLGAIKLL 685

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESSI AG RR+EA+ G  A   L  +   +  L++ LK     +  RV +I    R  +
Sbjct: 686 SESSISAGTRRVEALVGIDAFRFLAREHVLVSQLSTALKARPDELTDRVADIVGRLRDAE 745

Query: 772 LIHAKRK-----LQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSGII 825
               + +                 + +V  ++  + +   + +++ +   ++ ++     
Sbjct: 746 RELERLRAQAVLAGAAALAAGAEAVGEVALVTAQVPAGTPADDVRLLALDIRGRLAGRPA 805

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++V    E  A V+            A DL R S   LGG GG G+P +AQ G  + +  
Sbjct: 806 VVVVTEAEGAAIVVATDDAARGRGLRAGDLIRQSWAALGGKGG-GKPDVAQGGRGDASMI 864

Query: 886 DQAIAGVASFL 896
            +  A +   +
Sbjct: 865 PKVFARIRELV 875


>gi|145224345|ref|YP_001135023.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315444677|ref|YP_004077556.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1]
 gi|205830152|sp|A4TBW4|SYA_MYCGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145216831|gb|ABP46235.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|315262980|gb|ADT99721.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1]
          Length = 898

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/915 (34%), Positives = 477/915 (52%), Gaps = 72/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+LAW LLT      
Sbjct: 60  TSVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIELAWSLLTNPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGPCSEI+
Sbjct: 116 GYGFDPERLWATVYLDDDEAIELWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPCSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMG 229
           +D+G      G P ++E+  RYIEIWNLVFMQ E+              LP+ +IDTGMG
Sbjct: 176 YDRGPDYGIDGGPEANED--RYIEIWNLVFMQNERGEGTSKDDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I     +    Y      + V +R+I DH R+++ +I
Sbjct: 234 VERIACLLQGVDNVYETDLVRPVIDLVAGIAPRGYGQGNHTDDVRYRIIGDHSRTAAIII 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +  EMG +YPEL+     
Sbjct: 294 GDGVTPGNEGRGYVLRRLLRRIIRAAKLLGVEQPIMGELMATVRDEMGPSYPELVTDFER 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L +       K    +L+GD AF L+DT G P+D+  ++
Sbjct: 354 INRIAIAEETAFNRTLTAGSRLFEDAAETTRKAGSTVLSGDDAFTLHDTFGFPIDLTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL+ +D   F   + EQR RA+A +       T+   +      G T+F G+D L 
Sbjct: 414 AAEAGLS-VDEEGFRGLMAEQRRRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAVSGQ---KVEVVFDQT 518
                                    + +  I   G    +V     G    +VE++ +++
Sbjct: 472 ----------------------TTEARILGIFVDGRRVPVVSHVQGGDAPGRVELILNRS 509

Query: 519 PFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           PFYAE+GGQ+ D G   G G     +  +TDVQK A+ ++ H   VE G      ++V  
Sbjct: 510 PFYAESGGQIADEGTVTGTGASQTAKAAVTDVQKIAKTLWAHRITVESGEFVEGDTIVAA 569

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      ++  +   
Sbjct: 570 VDPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDDQRSQ 629

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE+  N+ +  +  V       E A + GA AL G  Y D VRVV +    GG  S  LC
Sbjct: 630 IEEVTNEAVEADYEVHNFTTELEKAKSMGAMALFGENYPDEVRVVEI----GGPFSIELC 685

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV   
Sbjct: 686 GGTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSD 745

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKE 808
            V  RVE + E  R  +    + +L               +I  +  ++  ++  + + +
Sbjct: 746 EVPARVENLVERLRAAEKELDRLRLVNARAAAANAAAGAEQIGGIRLVAQRMAGGISAGD 805

Query: 809 LKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
           L+S++  ++ K+ S   ++ L+  + +     ++ V +   DR   A DL ++    +  
Sbjct: 806 LRSLVGDIRGKLGSDPAVVALISEADDDTVPFVVAVNQAAQDRGLRANDLVKVLGAAVN- 864

Query: 866 GGGGGRPHMAQSGGP 880
           G GGG+  +AQ  G 
Sbjct: 865 GRGGGKADLAQGSGK 879


>gi|326904170|gb|EGE51103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis W-148]
          Length = 903

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/933 (35%), Positives = 484/933 (51%), Gaps = 75/933 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF        G YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFRWPAIQ-LGDYFKRGAIELAWALLTNSLAAG 114

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI+
Sbjct: 115 GYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIY 174

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  SE+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 175 YDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMG 232

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ+  N Y+ DL + +I    +V    Y+     + V +R+I DH R+++ LI
Sbjct: 233 VERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILI 292

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     
Sbjct: 293 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFER 352

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++
Sbjct: 353 ISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEM 412

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR
Sbjct: 413 AAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFD 516
                                    + +  I   G+ V          A  GQ+VE+V D
Sbjct: 472 S-----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLD 508

Query: 517 QTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++
Sbjct: 509 RTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 568

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  + 
Sbjct: 569 AAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQR 628

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  
Sbjct: 629 TQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLE 684

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 685 LCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 744

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + E  R  +    + ++               +I +V  ++  +S  + +
Sbjct: 745 SEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTA 804

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVL 863
            +L+S++  ++ K+ S   ++  I++ +  +V   V  +         A DL +  A  +
Sbjct: 805 ADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAV 864

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+  +AQ  G N    D A+  V S +
Sbjct: 865 E-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 896


>gi|104774413|ref|YP_619393.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103423494|emb|CAI98396.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 866

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/909 (35%), Positives = 487/909 (53%), Gaps = 66/909 (7%)

Query: 10  TFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVR 69
            FL+FF ++GH ++ S+SLIP +DPTL++ NSG+   K  F G   P  + +T+ QK +R
Sbjct: 1   MFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRITSSQKSIR 60

Query: 70  AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127
                ND++NVG+T RH T FEMLGNFS G YFKE AI  AW+ LT     DLD+ +LY+
Sbjct: 61  T----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDLDKDKLYV 116

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------- 180
           TVY +D EA ++W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G       
Sbjct: 117 TVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVP 173

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
           E  P   PG   E  RY+EIWN+VF +F           P  +IDTGMGLER+ ++LQ+ 
Sbjct: 174 EDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERVLSILQDA 231

Query: 241 TNNYDIDLFKHLIQASEQV-TGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297
             N++ DLF  +I A+E++  G KY  N  + ++ ++I DH+R+ SF I DG LP N GR
Sbjct: 232 PTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGALPGNTGR 291

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA    R LG     +  L+P +   M S YPE+      I + +++E++R
Sbjct: 292 GYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKVVKNEEDR 351

Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           FG TL+ GL LLD ++      +D+ ++G  AFK++DT+G P ++  +    +GL  +D 
Sbjct: 352 FGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDKGLK-VDK 410

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F+  +E Q+ RAR     L S  ++                           +   K+
Sbjct: 411 DGFDAEMEAQKERARKARGNLQSMGSQD--------------------------ETLMKI 444

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
             +           S +  I+   ++V++A  G+K  ++FD+TPFYAE GGQ+ D G   
Sbjct: 445 KDKSVFEYGVYEEESQLVDIIVDDKLVDKA-DGEKATLIFDKTPFYAERGGQVADHGDIY 503

Query: 536 G--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +  ++ DVQ       +H   V    L    +  L ID   R  L  +HSATHLL
Sbjct: 504 DQEGNLVARVVDVQHAPNDQNLHFVDVV-LPLVKGQTYKLKIDRARREGLRHSHSATHLL 562

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LG H  Q GS + PD LRFD T   PIT  ELK++E  VN+ I + + V T  
Sbjct: 563 HAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWEAIQVKTTE 622

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            + E     GA AL   KY D+VRVV +        S   CGGTH  +T +I +  I+SE
Sbjct: 623 TDPETGKKMGALALFDGKYTDKVRVVQM-----DDFSIEFCGGTHCDNTSQIGVFKIISE 677

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQL 772
            +I AG+RRIEA+T + A  +L G+ + L  + + +K      +  ++  + EE R  + 
Sbjct: 678 QAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQEELRSAEK 737

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +A  + Q+N             + D+  ++ I       +L+ + D  + + +S +++L
Sbjct: 738 QNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEGKSDVLIL 797

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              S++K   ++ +  + L     A DL +  A + GGGGG GRP+MAQ+GG N      
Sbjct: 798 GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFGGGGG-GRPNMAQAGGKNPEGLQD 856

Query: 888 AIAGVASFL 896
           AI    S L
Sbjct: 857 AIDAAVSQL 865


>gi|284037267|ref|YP_003387197.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816560|gb|ADB38398.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 890

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/934 (35%), Positives = 479/934 (51%), Gaps = 84/934 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FFQ   H ++ S+ L+  NDPTLMF NSGM  FK+ F G   P  + V
Sbjct: 1   MTSHEIRRHFLDFFQSKQHLIVASAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYKLP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY++V+          D+EAF LWK I G   D+II     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVSVFQGDAKDNVPFDQEAFDLWKPIVG--EDRIIYGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D +        PG    + +  + +EIWNLVFMQF ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTPEEIAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEALPARHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLI 286
            ER+   +Q K +NYD D+F   I+  E+++G+ Y    G   V  RVI DH+R+ SF I
Sbjct: 239 FERLCMAIQNKRSNYDTDVFTGTIKVIEEISGISYTAGTGMTDVAMRVISDHIRAVSFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG++P+N   GYV+RRI+RRA+ Y    L   EP M  L+P L  +    +PEL   + 
Sbjct: 299 ADGLVPSNAKAGYVIRRILRRAIRYGYSYLNLAEPFMTKLVPTLAMQFADVFPELTAQRD 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQD 403
            +   +R E+  F +TL  GL  LD ++  L  D    + G+  F+L DT G P D+   
Sbjct: 359 FVATVIREEEISFLRTLGTGLGRLDQIIGQLTTDGKTEIPGETVFELNDTFGFPADLTAL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   + L  ID   F +AL+EQ++R+R  +        +        +    +F+GYD  
Sbjct: 419 IAREKRLT-IDEAGFQKALQEQKARSRKDASSSAGDWID------VNETDRVEFVGYDQP 471

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                + + RK+  +                             G +V+VV D+TPFYAE
Sbjct: 472 EAYAQIVKYRKIQNK----------------------------QGTQVQVVLDKTPFYAE 503

Query: 524 AGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGI---LRTEMSLVLTI 575
           +GGQ+GDTG             L + D +K+   + +H      GI   L    S+   I
Sbjct: 504 SGGQIGDTGTLELFSGSDQIGTLTVLDTKKE-NDLTIHIVQDVTGIDDLLTEADSVYAVI 562

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +   R   S NHSATHLLH AL  +LG+HV Q GS + PD LRFD +H   +T  +L  +
Sbjct: 563 NTTRRGLTSSNHSATHLLHAALRDVLGTHVGQKGSYVGPDALRFDFSHFSKVTDEQLAEV 622

Query: 636 EDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E  VN+ I +++ +   R +    A   GA AL G KY D VRV++ +      +S  LC
Sbjct: 623 ERIVNEKIREDIKLDEKRNVPIGQAKELGATALFGEKYGDFVRVITFDPN----YSVELC 678

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV +TG I L     E S+  GIRR+EA T   A + +  Q   +  L   LK    
Sbjct: 679 GGTHVPATGHIGLFKFTGEGSVSTGIRRVEAKTSAGAEALVNEQMAVVSELKELLKA-PK 737

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVN-----FMSHIISEV--- 804
           +VV  V+ + +E   LQ      + +    +++    KI  VN       S ++  V   
Sbjct: 738 DVVKAVQSLLDERAALQKQVEALQNEKVQQLKNQLLDKIETVNHNGGPGYSRLVERVEVP 797

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKV 862
           ++  LK +   L+ K+ +  ++L G     K  + +++ + L+   + NA  + +  AK 
Sbjct: 798 NADALKQLAYDLKAKVDNLAVVL-GADINGKPQLAVMLPDSLIQDKKLNAGQVVKELAKN 856

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + GG GGG+P  A +GG + +  D A+A     L
Sbjct: 857 IKGG-GGGQPFFATAGGTDLSGLDAALAQGKELL 889


>gi|255532429|ref|YP_003092801.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255345413|gb|ACU04739.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 900

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/946 (32%), Positives = 494/946 (52%), Gaps = 95/946 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF+   H ++ S+ ++  NDPTLMFTN+GM  FK++F G+    Y  V
Sbjct: 1   MTAKEIRQAYLKFFESKQHHIVASAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  +W+LLT+ + + 
Sbjct: 61  TDTQRCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYKIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + +LY+++++ DE        EA++LWK+   +  ++II     DNFW M +TGPCGPCS
Sbjct: 121 KDKLYVSIFEGDEKEGLPRDTEAYELWKQY--VPEERIILGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IEIWN VFMQF +       +LP   +DTGMG
Sbjct: 179 EIHVDCRPDDERKLVEGKTLVNADHPQVIEIWNNVFMQFNRLKDGSLQLLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ K++NYD D+F+ LIQ      G++Y  N    +  RV+ DH+R+ +F+IA
Sbjct: 239 FERLVRVLQGKSSNYDTDVFQPLIQFIAAKAGIQYGMNEQTDIAMRVMADHVRAIAFVIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   +P +  L+P L  +    + EL   +  
Sbjct: 299 DGQLPSNNKAGYVIRRILRRAVRYAYTFLNLKDPFLNELVPVLAEQFKGVFEELALQQDF 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH-------------------------LGKDEI 381
           +++ +  E+  F +TL  G+   D                              L    +
Sbjct: 359 VQKVILEEEVSFLRTLATGIQRFDSYTKKQAEFLMSENAIDPEKSFEDQWVHSILKDQMV 418

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G+ AF+L DT+G P+D+ + +   +  + +D+  +N+AL +Q+ R+RA +  + +G  
Sbjct: 419 ISGEFAFELNDTYGFPIDLTELMAREKRWS-VDMEEYNKALLKQKERSRAAT-AVDTGDW 476

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             +   L       +F+GYD       + + R+V                          
Sbjct: 477 VLVNPDL-----EVEFVGYDDAEAETEIIKYRRV-------------------------- 505

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIV 560
              A   ++ ++V  +TPFYAE+GGQ+GDTG          +     KK  G+ VH+A  
Sbjct: 506 --SAKGKEQYQIVLSKTPFYAESGGQVGDTGRLEDHSRLFFVEITDTKKENGVIVHYA-- 561

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +      E      ID   R     NH+ATHLLH AL  +LGSHV+Q GS + PD LRFD
Sbjct: 562 DTLPEDIEGHFWAVIDENKRLLSQDNHTATHLLHAALKKVLGSHVNQKGSLVNPDYLRFD 621

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVV 679
            +H   +T  EL  IE  VN  I +N+P+  +  +  + AI+SG  AL G KY D VR++
Sbjct: 622 FSHFARVTDEELSQIEHLVNQKIRENIPLKEQRYVPYDQAISSGVTALFGEKYGDLVRII 681

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           + +      +S  LCGGTHV +TG+I    I++ES++ AG+RRIEAIT  +A + ++ Q+
Sbjct: 682 TFD----DHYSKELCGGTHVQATGQIGYFKIIAESAVAAGVRRIEAITADKAEAFVLAQN 737

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794
           ++L  L   LK +  ++   V  + EE  +L+    K  L+ +             I  +
Sbjct: 738 KELNELRELLKGN-KDLKAAVAGLIEENNRLKKDAEKAVLEQSANLKHEIVHHLKTINGI 796

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNA 852
           N ++  +   ++  +K++  A++  +   + ++     + K  + ++++E+L+     NA
Sbjct: 797 NLIATHVDLPNADAVKNLAYAVKD-MVDDLFLVFTTLIDDKPGITVMLSENLVKDRGLNA 855

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            ++ R  AK + GG GGG+P  A +GG N       +    + + +
Sbjct: 856 SNIVRELAKDIQGG-GGGQPFYATAGGKNKEGLAGVLHKAQAMMTQ 900


>gi|227499550|ref|ZP_03929657.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227218309|gb|EEI83563.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 870

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/919 (34%), Positives = 501/919 (54%), Gaps = 72/919 (7%)

Query: 1   MSNV--SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R+ +L FF  K GH LL S  LIP +D +L+  N+GM P K  FTG++K  
Sbjct: 1   MKNLGMNELRSKYLNFFGNKKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A++ LTKE
Sbjct: 61  NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAISWAYEFLTKE 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++ +  L++TV+ ED+EA+ +W +  G+++++I+R    DNFW + E GPCGPCSEIF 
Sbjct: 117 LEISKDDLWVTVFKEDDEAYNIWHEHIGIASERILREGKEDNFWEL-EVGPCGPCSEIFV 175

Query: 178 DQGEC----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           D+G           PG ++  +R++E+WNLVF QF +  +     L   +IDTGMGLER+
Sbjct: 176 DRGADRAIDENDNKPG-NDNSDRFMEVWNLVFTQFNKDAQGNYTPLSHPNIDTGMGLERI 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291
           A VLQ K N +++D+   +I   E++   KY+ N  + V+ RVI DH ++ +FL+ DG++
Sbjct: 235 AMVLQNKDNIFEVDVMAAIISEIEKLANKKYKENKKDDVSIRVIADHSKAMTFLVCDGVI 294

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRR++RRA  + +LLG     +  ++  +       Y EL   +  I++ +
Sbjct: 295 PSNEKRGYVLRRLIRRAYRHGKLLGIDGEFLTKIVDKVIDTYKVEYDELETNRDKIKDII 354

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           R E+ERF KT+D+GL  L+ ++  + +   ++L+G  AFKLYDT+G PLD+ ++IL  + 
Sbjct: 355 RDEEERFQKTIDQGLERLNSLIDAIERVHGKLLDGKEAFKLYDTYGFPLDLTKEILEEKD 414

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  +D  +FN  ++ Q+  AR         + + I     +    T+FIGYD L      
Sbjct: 415 L-DVDEKTFNDQMQIQKQTARDARKKDAGWSLDNINT---DGLAKTEFIGYDKLA----- 465

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                             + + +  I ++         G    ++ D+T FYAEAGG++ 
Sbjct: 466 ------------------IEAEILDIFEENSEASSISEGNNGIIISDKTSFYAEAGGEVA 507

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    +  R ++ DVQK+ + I+ H+  V  G +         +D   R  +  NHSA
Sbjct: 508 DTGIIFNNSFRAKVIDVQKQKD-IYFHYVEVLSGEITKGQIATFEVDRDRRFDIQRNHSA 566

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLL  AL  +LG  + Q GS +    LRFD +++K +T  E+K +ED VN  IA+   V
Sbjct: 567 THLLDQALRDVLGEGIKQAGSLVDEYKLRFDFSYNKAMTKEEIKEVEDIVNRQIAKQELV 626

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              I++ + +   GA  L   KY D+VRVVS+     G +S  LCGG HV+ T +I++  
Sbjct: 627 TKEIVDYKQSQQMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFK 681

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I  E+S+ AG+RRIEA+TG++A   L   +  LK +AS L  +   ++ R+E +  E   
Sbjct: 682 INQETSVSAGVRRIEAVTGRKAYELLTKSENSLKVIASKLNTNVSTIINRIESLENEIEN 741

Query: 770 LQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
            +   ++ K   + +          +I  +N +      V   EL+   + ++    + I
Sbjct: 742 YKKDISRLKSNNSSDIVNELKADVKEIKGINLLVKKFDNVPMDELRDYENRIKNSFDNLI 801

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV-------LGGGGGGGRPHMAQS 877
           I+   +S   K    + V ++L +++NA  + R  A++                 + AQ+
Sbjct: 802 IVFASVS--DKIVFTVSVDDNLTNKYNAGKIVREIAQITGGNGGGKK--------NFAQA 851

Query: 878 GGPNGNKADQAIAGVASFL 896
           GG N +K D+A+  V+  +
Sbjct: 852 GGKNISKLDEALKKVSEII 870


>gi|57238881|ref|YP_180017.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578810|ref|YP_197022.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|81557351|sp|Q5HC27|SYA_EHRRW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57160960|emb|CAH57866.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58417436|emb|CAI26640.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 887

 Score =  796 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/892 (42%), Positives = 535/892 (59%), Gaps = 55/892 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS +R  F++FF KNGH+  PSS L+  +DP+L+FTN+GMV FK  FT  +        +
Sbjct: 7   VSDLRRLFIDFFVKNGHQFFPSSQLVIKDDPSLLFTNAGMVQFKQRFTSVDDRSINTAVS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAWD +TKE  LD++
Sbjct: 67  SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKERAIELAWDFVTKELALDKK 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D++AF LWKKIS  S DKII+I TNDNFWSM   GPCGPCSEIF+D GE +
Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186

Query: 184 PGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG   E+G R+ EIWNLVFM++ +  + E  +LP+  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTEEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI  S++ +G     +  + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDINLFKALIAMSKKESG---NSSCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L YT+ LM  + P L  E     M   YPEL +AK LI   L++E+E 
Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELFKAKDLIISILKTEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L++L   ++L+GD+ F+LYDT+G P+DI  DI+  RG+   D   
Sbjct: 364 FKDTLVRALPLLEKELTYLSTGDVLSGDIIFRLYDTYGFPVDITLDIIKERGIR-FDEKG 422

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +E+Q++R+R +H +        KIW  +++ Y  T+F+GYD               
Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDN-------------- 468

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---- 532
                       S I+  ++     V  A  G KV ++ D TPFYAEAGGQ  DTG    
Sbjct: 469 --------FQVQSKILSMVMNNDRNVTVANVGDKVSILMDITPFYAEAGGQQADTGLLSV 520

Query: 533 ------CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
                    G      +T+ +   +G+++H  IV+ G L     +   I+   R+ L  N
Sbjct: 521 VRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIVKSGSLIIGDIVSAEINSHRRKDLCAN 580

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH+ L   + +++ Q GS +  D LRFD +++  +T  ++K IE+ + D+I QN
Sbjct: 581 HSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQN 640

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            PV T I N ++A+ +GA AL   KY++  VRVV++        S  LC GTHV  TGEI
Sbjct: 641 HPVETNICNLQNAMDNGAIALFTEKYDNHEVRVVNIGN------SKELCCGTHVKYTGEI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SESSI  GIRRIEA+TGQ A  +   Q++ L  +A  +K    +V+ ++++I  
Sbjct: 695 GCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKINR 754

Query: 766 EYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           E ++L Q + A     ++++ ++  KI ++NF+   +S V    ++     + K++   +
Sbjct: 755 ENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSSVPIDVVRKF---IMKRLVKDM 811

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           IML           ++ V   L  +  A D  ++   V+    GGG   +AQ
Sbjct: 812 IMLFSNVVNHNKIYVVGVGNSLHSKVKAADFVKIIGCVVKS-KGGGNAQLAQ 862


>gi|240170724|ref|ZP_04749383.1| alanyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 904

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/933 (34%), Positives = 480/933 (51%), Gaps = 74/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPYPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWSLLTNGVAAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL+ TVY +D+EA  LW+ ++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQDVAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPDYGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLI 286
           +ER+A VLQ+  N Y+ DL + ++ A   V    Y+     + V +R+I DH R+++ LI
Sbjct: 234 VERVALVLQDVHNVYETDLLRPVVDAVALVAARPYDAGNHADDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LL    P++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTPIVGDLMATVRDAMGPSYPELVSDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++
Sbjct: 354 INRIAVAEETAFNRTLASGSRLFDEVAGTTKAKGATVVSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F + + EQR RA+A +       T+   +      G T+F G+D L 
Sbjct: 414 AAESGLR-VDEAGFRELMAEQRRRAKADAAARKHAHTDLTAYRELVDAGPTEFTGFDELA 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--------EAVSGQKVEVVFD 516
                                    + +  I   G+ V         +A +G +VE+V D
Sbjct: 473 S-----------------------EARILGIFVDGKRVPVVAHGSEGQAANGDRVELVLD 509

Query: 517 QTPFYAEAGGQLGD----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +TP YAE+GGQ+ D    +G   G   R  +TDVQK A+ ++VH   VE G      +++
Sbjct: 510 RTPLYAESGGQIADEGTISGTGSGGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVI 569

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD +   P+T  + 
Sbjct: 570 AAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGPLTEDQR 629

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE+  N+ +  +  V T     E A A GA AL G  Y D VRVV +    GG  S  
Sbjct: 630 THIEEVTNEAVQADFEVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSLE 685

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV S+ +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV 
Sbjct: 686 LCGGTHVESSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVP 745

Query: 753 QGNVVGRVEEIWEEYRKLQLIHA-----KRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806
              V  RV  + +  +  +           +           +I +V  ++  IS  + S
Sbjct: 746 SDEVPTRVANLVDRLKAAEKELERVRLANARAAAVNAAAGAERIGNVRVVAQRISGGITS 805

Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
            +L+S++  ++ ++ S   +I L+   +       +       D    A +L +  A  +
Sbjct: 806 ADLRSLVGDIRGRLGSDPAVIALIAEGENDSVPYAVAANPAAQDLGIRANELIKPLAAAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG+  +AQ  G      D A+  V S +
Sbjct: 866 -DGRGGGKADLAQGSGKKPAGIDAALDAVRSEI 897


>gi|58616869|ref|YP_196068.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|75356993|sp|Q5FH56|SYA_EHRRG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|58416481|emb|CAI27594.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 887

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/892 (42%), Positives = 535/892 (59%), Gaps = 55/892 (6%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           VS +R  F++FF KNGH+  PSS LI  +DP+L+FTN+GMV FK IFT  +        +
Sbjct: 7   VSDLRRLFIDFFVKNGHQFFPSSPLIIKDDPSLLFTNAGMVQFKQIFTSVDGRSINTAVS 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW+ + KE  LD++
Sbjct: 67  SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKEHAIELAWNFVIKELALDRK 126

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLYITVY +D++AF LWKKIS  S DKII+I TNDNFWSM   GPCGPCSEIF+D GE +
Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186

Query: 184 PGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GGLPG   E+G R+ EIWNLVFM++ +  + E  +LP+  IDTGMGLER+A V+Q   +
Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTKEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDI+LFK LI  S++ +G     +  + HRVI DH+RS++FLIA+G+ P NEGR Y+LR
Sbjct: 247 NYDINLFKALIAMSKKESG---NSSCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357
           RI+RRA  Y  +L YT+ LM  + P L  E     M   YPEL++AK +I   L++E+E 
Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELLKAKDMIISILKTEEEN 363

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F  TL R L LL+  L++L   ++L+GDV F+LYDT+G P+DI  DI+  RG+   D   
Sbjct: 364 FKDTLVRALPLLEKELTYLSAGDVLSGDVIFRLYDTYGFPVDITLDIIKERGIR-FDEKG 422

Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           F   +E+Q++R+R +H +        KIW  +++ Y  T+F+GYD               
Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDN-------------- 468

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---- 532
                       S I+  ++     V  A  G KV ++ D TPFYAEAGGQ  DTG    
Sbjct: 469 --------FQVQSKILSMVMNNDRNVTVANVGDKVSILMDVTPFYAEAGGQQADTGLLSV 520

Query: 533 ------CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
                    G      +T+ +   +G+++H  I++ G L     +   I+   R+ L  N
Sbjct: 521 VRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIIKSGSLIIGDIVSAEINSHRRKDLCAN 580

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH+ L   + +++ Q GS +  D LRFD +++  +T  ++K IE+ + D+I QN
Sbjct: 581 HSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQN 640

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            PV T I N +DA+ +GA AL   KY++  VRVV++        S  LC GTHV  TGEI
Sbjct: 641 HPVETNICNLQDAMDNGAIALFTEKYDNHEVRVVNIGN------SKELCCGTHVKYTGEI 694

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SESSI  GIRRIEA+TGQ A  +   Q++ L  +A  +K    +V+ ++++I  
Sbjct: 695 GCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKINR 754

Query: 766 EYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           E ++L Q + A     ++++ ++  KI ++NF+   +S V    ++     + K++   +
Sbjct: 755 ENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSGVPIDVVRKF---IMKRLVKDM 811

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           IML           ++ V   L  +  A D  ++   V+    GGG   +AQ
Sbjct: 812 IMLFSNVVNHNRIYVVGVGNSLHSKVKAADFVKIINCVVKS-KGGGNAQLAQ 862


>gi|291276861|ref|YP_003516633.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964055|emb|CBG39895.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 850

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/896 (35%), Positives = 495/896 (55%), Gaps = 53/896 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTV 64
            IR  FL+FFQ  GH++  S  L+P  D +L+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 3   DIRKKFLDFFQSKGHQVYASMPLVP-EDASLLFTNAGMVQFKDIFTGKIPTPSIPRATSS 61

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  
Sbjct: 62  QLCIRAGGKHNDLENVGFTRRHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTEVLGFDKEV 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           LYI++++ D+EAF++W K   ++ D+I R+   DNFW M +TG CGPCSEIF DQG    
Sbjct: 122 LYISIHESDDEAFEIWSKY--VNPDRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGSSFA 179

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   +G+R++EIWNLVFMQ+E+++      LPK SIDTGMGLER++ +L+ K +N+
Sbjct: 180 SSEDYFGGDGDRFLEIWNLVFMQYERKSDGTLIPLPKPSIDTGMGLERVSALLEGKESNF 239

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF  LI+  E++ G  Y   +  ++RVI DH R+ +FL+A G     EGRGYVLRRI
Sbjct: 240 DSHLFMPLIKEVEKLCGKPYHYESGASYRVIADHARAVAFLLAQGSNFDKEGRGYVLRRI 299

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ +  LLG+       ++  +C EMG  Y  L++ K  I    + E+ERF +T+++
Sbjct: 300 LRRAVRHGYLLGFEGAFFYRIVEKVCEEMGGFYTYLLEQKNFISMQTKMEEERFFETIEQ 359

Query: 365 GLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           G+ L    L  + +  +++ +G++AF+LYDT G PLD+ QD+L    L  +D+  F  ++
Sbjct: 360 GIHLFKKELERMREMGEKVFDGNIAFRLYDTFGFPLDLTQDMLKEENLE-LDLAGFESSM 418

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           ++Q+  A++   G G    +  +  + +++G+  F GY                      
Sbjct: 419 QKQKQLAKSSWKGSGDPLIKGDFKQVLQEFGSNIFNGY---------------------- 456

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
              +   S + A+  +    +E +  ++  ++ D TP Y E+GG +GD G  + +G  + 
Sbjct: 457 -THDRHHSKILALFDENLERQEILQ-KEGYILLDTTPLYPESGGAIGDRGVLLENGECIA 514

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                KK  G+ +     ++  L+      + +D+  R++++ +HSATHLLH  L    G
Sbjct: 515 KILDTKKYFGLNISQISPKK-PLKVGEIYEVLVDHS-RQEIAKHHSATHLLHAILREKFG 572

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           S V+Q GS +  + LRFD +  +PIT  EL  I+D+VN +IA+NLP     M    A   
Sbjct: 573 SQVAQAGSLVEANRLRFDFSFPRPITKEELLEIQDSVNALIAKNLPARVEHMEIGQAKTR 632

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY + VRVVS      G  S  LCGG HV +TG I   YI  E+ + +G+RR
Sbjct: 633 GAIALFGEKYGENVRVVSF-----GEESCELCGGIHVQNTGFIGNFYITKENGVSSGVRR 687

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+ G     H        + +   LK     +   V ++ E+ + L+      K   +
Sbjct: 688 IEAVCGNAGYLHAKESLLHNQQIKEILKNQDMMLG--VAKLKEKIKTLEKQLQNPKKDTS 745

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           +      ++  +N +S I+   +S E+K ++D  +       I+L+     +K   +   
Sbjct: 746 L------QVQQINGISLIVQITESTEIKKLIDEAKNHYDKVAILLI----NEKNLAIAAG 795

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +++      A D  + +A++L GG GGGR   A +GG   +K   A+     + K+
Sbjct: 796 SKNT--NIKADDWVKKTAQIL-GGNGGGRDDFATAGGKEHSKIKAALQSAILYAKE 848


>gi|296271979|ref|YP_003654610.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096154|gb|ADG92104.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 850

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/895 (38%), Positives = 504/895 (56%), Gaps = 50/895 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +L+FF+  GHE++ S  L+P +DPTL+FTN+GMV FK+IFTG    P     T+ 
Sbjct: 2   DIRKEYLDFFKNKGHEVISSMPLVP-DDPTLLFTNAGMVQFKDIFTGAIPAPKNPTATSC 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +T    L   +
Sbjct: 61  QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFITVNLALPIDK 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           L++T+++ D+EAF +WKK   +   +I R    DNFW+M +TGPCGPCSEIF+DQG E  
Sbjct: 121 LWVTIHESDDEAFNIWKKY--IEPSRIKRFGDKDNFWAMGDTGPCGPCSEIFYDQGVENF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                    EG+R++EIWNLVFMQ+E Q+   R  LPK SIDTGMGLER+  + +   NN
Sbjct: 179 GSDEDYLGGEGDRFLEIWNLVFMQYE-QSNGVRTPLPKPSIDTGMGLERVIAIKEGVLNN 237

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D   FK L+    ++   +     I ++RVI DHLR+ SF+++ GIL  NEGR YV RR
Sbjct: 238 FDSSNFKPLVNEVAKLAKKQPTKETIGSYRVIADHLRAVSFMLSQGILFGNEGRPYVNRR 297

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  LLG+ E  M  L+  L   MG  Y +L +    I+E +  E+ERF KT+ 
Sbjct: 298 ILRRAVRHGYLLGFREAFMSKLVDVLIKIMGEHYTDLKEQASFIKEQIMLEEERFFKTIA 357

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L +  K  + +G+VAFKLYDT+G PLD+ +D+L  + L  +DI +F++ + 
Sbjct: 358 SGMTLFNEELINTKK--LFSGEVAFKLYDTYGFPLDLTEDMLREKDLK-VDIETFDKLMN 414

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
            Q+++A+A   G G   +E  +  L EKYG  +F+GY+                      
Sbjct: 415 AQKAKAKAAWKGSGDEASEGDFKVLLEKYGVNEFVGYENTSYK----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S+IV  + ++   V+    GQ   ++ D+TPFYA +GGQ GD G    D   + I
Sbjct: 458 -----STIVTLLDEKFNEVDSLEKGQTGWIMLDKTPFYATSGGQSGDIGALE-DKQHIAI 511

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +   K  GI +    VE   L     +   +   NR +++ +HSATHLL  AL  +LG 
Sbjct: 512 IEETSKFHGINLSKIKVETSSLEKGEVVNAVV--VNRYEIAKHHSATHLLQSALKMVLGD 569

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
            VSQ GS      LRFD T+ K +T+ +++ ++D VN +I + L      +  E+A   G
Sbjct: 570 TVSQAGSLNNSSRLRFDFTYPKAMTNEQIEEVQDLVNSMITRGLKGSVEELPIEEAKQRG 629

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A A+ G KY D VRVV+      G  S   CGGTHV +T +I   YI+ ES + AG+RRI
Sbjct: 630 AIAMFGEKYGDMVRVVNF-----GDVSVEFCGGTHVRNTLDIGSFYILKESGVSAGVRRI 684

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G  A  +      K+  + S +K    +V+  ++++ E+ + L+    + +     
Sbjct: 685 EAVCGSAAIKYTNSIISKMNEIESEIK--NVDVISGIKKLKEQIKTLKQEVIEAQSASTT 742

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             ++   I D   +  I+   D   +K ++D  +   +   I+L+  +K+ K  ++    
Sbjct: 743 P-IAEEMIGDTKVIVDIVKNGD---IKKIVDDAKNGNEKVAILLI-QAKDDKVMLVAG-- 795

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   A +  +  A ++GGGGG GRP  AQ+GG + +K D+A A   ++ K+
Sbjct: 796 -SKNTNIKAGNWIKEIAPIVGGGGG-GRPDFAQAGGKDVSKVDEAKAKALTYAKE 848


>gi|323359964|ref|YP_004226360.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323276335|dbj|BAJ76480.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 889

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/919 (34%), Positives = 482/919 (52%), Gaps = 57/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL+FF+K  H ++PS+SL+  +DP L+FT +GMVPF    +G   P Y   
Sbjct: 1   MKTAEIAQRFLDFFEKKNHTIVPSASLV-TDDPALLFTVAGMVPFIPYLSGVVPPPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
             VQKC+R     ND++ VG+T RH TFF+MLGN+SFG YFKE AI+ AW+LLT      
Sbjct: 60  ADVQKCIRT----NDIEEVGKTPRHGTFFQMLGNWSFGDYFKEDAIRFAWELLTAPEAEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D + L++TVY+ED+EA  LW K+S L  ++I R+  + N+WS    GP GPCSEIF
Sbjct: 116 GLAFDPKDLWVTVYEEDDEARDLWLKLSTLPDERIQRLGKDTNYWSTGLPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+E  N + ++       LP  +IDTGMGL
Sbjct: 176 FDRGPAY-GIDGGPATDDDRYVEIWNLVFMQYEITNVRSKYDFDIVGELPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287
           ER+A + Q   N Y+ D  + ++  + ++ G  Y      + V  R++ DH+RSS  L+A
Sbjct: 235 ERIAFIKQGVDNMYETDQVRPVLDLAAKLAGKAYGAESHEDDVRLRIVADHVRSSLMLLA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGY+LRRIMRRA+   RLLG        L  A    M  +YPE+      +
Sbjct: 295 DGVTPSNEGRGYILRRIMRRAIRSMRLLGVEGATFPELFAASRDAMKESYPEVEADYARL 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E++ F +TL  G  +LD  ++         L+G  AF L+DT+G P+D+  +I 
Sbjct: 355 SAYAIAEEQTFLRTLAAGSAILDQSVAEAKNGGGTTLSGSEAFLLHDTYGFPIDLTLEIA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL+ +D  +F+Q + EQR+RA+A +        ++  +      G T F GY  L+ 
Sbjct: 415 EEAGLS-VDRGAFDQLMLEQRTRAKADARARKGAIADQSAYREFRALGETVFTGYTELQT 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  I+  G+  + A  GQ  E++  +T  YAE+G
Sbjct: 474 -----------------------ESKVLGILVDGQGTDRASEGQIAEIITGETALYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+ D G  +G G  L++ DVQ+   G+  H   V  G +         +D  NR     
Sbjct: 511 GQVADKGTIVGPGYELEVLDVQRPVPGLISHTVEVTTGEVSVGAPATTVVDALNRHSAQQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATHL+H A+   LG   +Q GS      +RFD +    ++      IED  N+ +  
Sbjct: 571 AHSATHLVHAAIRDTLGKTATQTGSLNRAGYMRFDFSWGSALSPETRTEIEDIANNAVRD 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V TR+M+ ++A A+GA AL G KY D VR+V +    GG  S  LCGGTHV+ + EI
Sbjct: 631 NLEVTTRVMSLDEAKAAGAMALFGEKYGDTVRMVDI----GGPWSRELCGGTHVARSSEI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +V E S+ A  RR+EA+ G  A   L  +   +  L++ LK  +  +  R+ E+  
Sbjct: 687 GLVNLVGEQSVGASNRRVEALVGLDAFRDLAAERAIVSQLSTSLKTPREQLTSRIAELAA 746

Query: 766 EYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819
             +  +   A  + Q     L         +  V  ++  +     + +++S+   ++ +
Sbjct: 747 NLKAAEKKIAAFEAQALTGRLPQLVEAAISVGTVRVVAESLGEGASADDVRSLALQVRDR 806

Query: 820 IQ-SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +     ++ +      +A+V++V  E   +R  A      +A  + GGGGGGRP +AQ G
Sbjct: 807 LGTDPAVVALASVAGGRATVVVVTNESARERGLAAGALAKAAAGILGGGGGGRPDVAQGG 866

Query: 879 GPNGNKADQAIAGVASFLK 897
           G +     QA+ G+ + ++
Sbjct: 867 GTDATALPQALEGIVADVR 885


>gi|157115817|ref|XP_001658296.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108883466|gb|EAT47691.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 966

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/968 (30%), Positives = 466/968 (48%), Gaps = 88/968 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               IR  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TAKQIRNAFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMAK 65

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT  
Sbjct: 66  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDR 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPC
Sbjct: 126 LKLPKDRLYVTYFGGHPESGLEPDLECREIWIKL-GVKEEHILPGSMKDNFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  ID GMG
Sbjct: 185 GPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L +A ++ TG   Y+G           + +RV+ DH R
Sbjct: 244 FERLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPSYQGRVGADDVDGVDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVFLLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 364 VKKDPQNIKNIINEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPID 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   + +  ID+  + +A  E    ++       +           + +  ++   
Sbjct: 424 LTQLMAEEKNMT-IDMEGYEKAKHESYILSQGKEKSKAATVD-------LDVHAISELQE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K              +  V A+      V+E  +GQ+  V+ D+T 
Sbjct: 476 KKVPTTDDSFKYRYKADVDPMAEYKFEPCNGKVLALRANNIFVDEVQAGQECAVILDKTN 535

Query: 520 FYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE+GGQ+ D G  +    +     +  V     G  +H  +VE GILR    +   +D
Sbjct: 536 FYAESGGQIYDQGYLVKVGDESTEFNVNLV-YNRGGYIIHIGVVE-GILRVGDEVACHMD 593

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   E
Sbjct: 594 TLRRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKSAMTVEQVAESE 653

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEYE 684
               +++ +N+ +  +      A +  G  ++    Y D VRV+S            E E
Sbjct: 654 RLTREVVKKNMQIYAKESKLSVAKSIKGLRSVFDEVYPDPVRVISFGVPVENLEANPEGE 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           +G   S   CGGTH+  +G +    I +E +I  GIRRI A+TG  A   L   +     
Sbjct: 714 EGVETSVEFCGGTHLHQSGHMWDFVITTEEAIAKGIRRIVALTGPEALKALKKTELLENE 773

Query: 745 LASFLKV--------SQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLS- 787
           L +                +V ++ E+ E+         +K ++ +  + L+  ++D   
Sbjct: 774 LNALKSTIEADKTGKDSKELVKKIVELNEDVSQAVIPYVKKDEIRNVLKSLKKTLDDKER 833

Query: 788 -----------------CHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829
                                 D  F+ H +   ++ K L S +  ++K       + V 
Sbjct: 834 AARAAVSTTVVEKAKELSESNKDAPFLVHRMEAYNNTKALDSALKEVRKINPEQSALFVS 893

Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + KK   L  V +  +++   A +     +  + GG GGG+P  AQ+ G N +K ++
Sbjct: 894 SDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM-GGKGGGKPESAQASGANFDKVEE 952

Query: 888 AIAGVASF 895
            +     F
Sbjct: 953 ILELARQF 960


>gi|325268831|ref|ZP_08135456.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324988803|gb|EGC20761.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 888

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/936 (35%), Positives = 498/936 (53%), Gaps = 90/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEAAGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY               E    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYSHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L     + L+G  AF
Sbjct: 359 REMGAAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGRKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  L
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAKQKARARNAAV-----VENGDWEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV++     E
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNVE 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+        E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHAASTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS 802
               +  ++   +    EE   ++    K + Q               +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVEMVDGVHVIKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKIIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           K++ GG GGG+PH AQ+GG + +    A+  V   +
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELI 886


>gi|195033960|ref|XP_001988798.1| GH11356 [Drosophila grimshawi]
 gi|193904798|gb|EDW03665.1| GH11356 [Drosophila grimshawi]
          Length = 967

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/973 (31%), Positives = 469/973 (48%), Gaps = 88/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +L+FF++  H  + SSS IP +DPTL+FTN+GM  FK IF G   P    
Sbjct: 3   LMTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRTVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +  D         E  + W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 ERLRLPKDRLYVTYFGGDAASGLQPDLECKQFWMDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           +++    +EIWNLVF+QF +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNQDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVSTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGL 396
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG     + GDVA++LYDT+G 
Sbjct: 361 PEVKKDPQHIMDIINEEELQFLKTLTRGRNLLNRTIEKLGTSQTTIPGDVAWRLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   + L  ID+  +  A    +  +   S G G+   ++I   +   +  ++
Sbjct: 421 PVDLTQLMAEEKSL-QIDMAGYEAA----KQNSYILSQGKGASKIDEITLDV---HAISE 472

Query: 457 FIGYDLLRGSKFMKEDRKVLC-QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                L       K + + +  ++      +  +S + A+  + + V+E  SGQK  +V 
Sbjct: 473 LQEKGLPSTDDSFKYNYEAVSVERDAAYNFSECTSKIVALRFENKFVQEISSGQKAGIVL 532

Query: 516 DQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           D+T FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     L L
Sbjct: 533 DKTNFYAESGGQIYDQGVLVKLNDEANEFLVDRVYNRGGYILHIGVVE-GNLAVGDELQL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++ 
Sbjct: 592 HIDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNCKAAMTIDQVA 651

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------V 681
             E    D++ QN+P+  +      A    G  ++    Y D VRV+S            
Sbjct: 652 RTEKLTRDMVYQNMPIYAKESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDRLESQP 711

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           + E G   S   CGGTH+ ++G IM   I SE +I  GIRRI A+TG  A   +   +  
Sbjct: 712 DAETGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAF 771

Query: 742 LKSLASFLKVSQGNVVGR--------VEEIWEEY--------RKLQLIH----------- 774
            + ++      + +  G+        + E+ E+         +K ++ +           
Sbjct: 772 EQEISQLQATIEADQSGKESKMYVKLIVELTEQISHATIPHVKKDEMRNLLKLLKKSLDD 831

Query: 775 AKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
            +R L+  V           C        + H +   ++ K L + +  ++ ++     M
Sbjct: 832 KERALRAAVSVTVVERTKALCEAEPQAKVLVHQLEAYNNTKALDAALKQVRLQLPEAAAM 891

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            V +  + KK   L  V +  +++   A +  +  + +L GG GGG+   AQ+ G N  +
Sbjct: 892 FVSVDADSKKIFCLCSVPKAAVEKGLKANEWVQHVSSIL-GGKGGGKAESAQASGSNFER 950

Query: 885 ADQAIAGVASFLK 897
            D+ +     F +
Sbjct: 951 VDEIVQLANQFAQ 963


>gi|255534656|ref|YP_003095027.1| alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340852|gb|ACU06965.1| Alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 893

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/942 (34%), Positives = 494/942 (52%), Gaps = 103/942 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++FQ  GH ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQQIRQQFLDYFQSKGHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKDPKAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFKE AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKEEAIGFAWELLTEVYKIP 120

Query: 122 QRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++ D        ++A+  WKK   +   +II     DNFW M E+GPCGPCS
Sbjct: 121 KEDLYVTVFEGDSVEDLARDQDAYNFWKK--HIDEGRIINGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + + +   L   + +  + +EIWNLVFM+F ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTAEEKGMVSALDLVNNDHPQVVEIWNLVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFL 285
            ER+   LQ KT+NYD D+F  LIQ  E+++G++Y G       +  RV+VDH+R+ +F 
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIQKVEEISGLRYTGILTDEKDIAIRVVVDHIRAVAFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ YA R LG  E  +  L+  L TEMGS + EL + +
Sbjct: 299 IADGQLPSNGGAGYVIRRILRRAISYAYRFLGMKEAFLFELVGVLQTEMGSYFAELSRQQ 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++ E+  F KT++ GL  +D V++      ++ L G   F+LYDT+G P D+ +
Sbjct: 359 KLVTEVIKEEEISFLKTIELGLKRIDLVINDTISKNEKTLPGAAVFELYDTYGFPADLSR 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   + L  ID   FN+ + +Q+ R++  S        +K++  +  +    QF+GYD 
Sbjct: 419 IIAEEQQLT-IDEAGFNEEMAKQKQRSKKSSA-------QKVYDWVILEEKEQQFVGYDD 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                ++   RKV                            E   G+  ++V  ++PFY 
Sbjct: 471 TETETYITRYRKV----------------------------ENKDGEYYQIVLSKSPFYP 502

Query: 523 EAGGQLGDTGCAI--------------------------GDGIRLQITDVQKKAEGIFVH 556
           E GGQ+GD G  +                               +++ D +K+   I   
Sbjct: 503 EGGGQVGDHGILVPSYAKNFNIVSPQKFLDQLASENNSDRPSEVIEVLDTRKENNLII-- 560

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            ++++             ++   RR    NHS THLLH AL  +LG+HV Q GS + P+ 
Sbjct: 561 -SLIKEMPKDAGAVFYAKVNRDERRNTQANHSVTHLLHEALREVLGTHVEQKGSFVGPEY 619

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDR 675
           LRFD +H   +T  ELK +E+ VN  I +N+ +     +   +A+  GA AL G KY D 
Sbjct: 620 LRFDFSHFAKLTDEELKLVEEKVNTKIKENISLEEFRNIPISEAMEKGAMALFGEKYGDN 679

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR++          S  LCGGTHV +T EI    I SESS  AGIRRIEAI G +A ++ 
Sbjct: 680 VRMIQFG------TSRELCGGTHVRNTAEIGFFKIQSESSTAAGIRRIEAIAGDQATAYF 733

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK----- 790
              + + K +++ LK    ++   VE++ EE   L+      K +    +    K     
Sbjct: 734 NNLESQFKEISALLKTK--DISKTVEKLLEENAALKSEIEAFKKEKAKAETGNWKNDFTE 791

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            A    +   +S +DS  +K ++  L+K++   +I+++    + K  + + V+ DL  ++
Sbjct: 792 SAGKKLLVKKVS-LDSASVKDIVFQLKKEVAGSVIIIIS-DADGKPMITVGVSADLETQY 849

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +A ++ +  AK + GGGG G P  A +GG N    D+A    
Sbjct: 850 HAGNIVKELAKEIQGGGG-GNPGFATAGGKNLAGIDEAYNKA 890


>gi|260591299|ref|ZP_05856757.1| alanine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536665|gb|EEX19282.1| alanine--tRNA ligase [Prevotella veroralis F0319]
          Length = 888

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/936 (35%), Positives = 498/936 (53%), Gaps = 90/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ D        +EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVN 271
           GMG ER+  ++Q K +NYD D+F  +I+  E+++G KY               E    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIEEIERLSGKKYNHTFPEGPNGEGINDEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  M  L+  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYKLINVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAF 388
            EMG AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L       L+G  AF
Sbjct: 359 HEMGVAYPELTAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGKTELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ +E+Q++RAR  ++          W  +
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMEQQKARARNAAV-----VENGDWEIV 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV+      E
Sbjct: 505 --YEIVLDYTPFYGEMGGQVGDQGVLVNEDETINVIDT-KRENNQSIH--IVKELPKDVE 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  ID   R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACIDTDKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+        E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKLVNEMIRKDYPLDEHRDTPMEEAKEMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H  STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHAKSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIIS 802
               +  ++   + +  EE   ++    + + Q      + L      +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTKFVEENDAMKKEVERFRAQAVDRAAKSLVDRAETVNGVHVVKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVREALPENLVCVLGSVYENRPQLSIMLSDDMVKEHDLNAGKVIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           K++ GG GGG+PH AQ+GG + +  + A+  V   L
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGINAAVEKVIELL 886


>gi|228471913|ref|ZP_04056683.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276765|gb|EEK15471.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 877

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/933 (34%), Positives = 480/933 (51%), Gaps = 94/933 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP  + V
Sbjct: 1   MTSQEIRELFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGNAKPKQKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  VDTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAITWAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EA+ +WK+   ++ D I+     DNFW M + GPCGPCS
Sbjct: 121 KENLYVTVFEGSPEEGVPFDQEAYDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI      D  +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDGEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPAQNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
            ER+  VLQ K +NYD D+F  LI   E++T  +Y         +    +  RVI DH+R
Sbjct: 239 FERLCMVLQGKQSNYDTDVFTPLIHKVEEITKTRYTNGIQLTPEQEQINIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + SF IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG  +PE
Sbjct: 299 AVSFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLTKQMGGTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +  LLI   ++ E+  F +TL++GL++LD ++ +   D+ L+G  AF+LYDT+G P D
Sbjct: 359 LEKEFLLIVSVIKEEEASFLRTLEQGLLMLDVMIQNAS-DKQLSGSKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  RG+  +D  SF + L++Q+ R+RA +           W  L++     +FIG
Sbjct: 418 LTALILSERGMT-LDEASFEEHLQKQKERSRAAAQ-----VKAGDWVVLRDD-EEEEFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + RK                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAMVRLVKYRK---------------------------VESQKDGTLYQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H A  E             +    
Sbjct: 504 FYPEGGGQVGDRGTLQAANGELIYITDTKKENNLIIHIA--EHLPENLNDPFKAEVHPMG 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS ++P+ LRFD +H   +T  EL  +E  V
Sbjct: 562 RALAQSNHSATHLLHQALREVLGTHVEQKGSHVSPEALRFDFSHFAKLTPEELTEVERLV 621

Query: 640 NDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+     +  + A+ +GA AL G KY ++VR++          S  LCGGTH
Sbjct: 622 NKRIYEKIPLEEHRNIPIQQALEAGAMALFGEKYGEKVRMIQFG------ESRELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    IVSE ++ AG+RRIEAIT   A  H + Q++ L+ +   LK  Q  +  
Sbjct: 676 VKNTGDIWFFKIVSEGAVAAGVRRIEAITNAGALKHFLLQEKLLEEIKGSLKNPQDPI-K 734

Query: 759 RVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMD 814
            +  + EE  +L  +L   KR+    ++     +   ++ +  +    ++D   LK +  
Sbjct: 735 SITNLQEENARLHKELEQLKREQAKQLKGELKGEFVTISGVQCLTKRLDLDIATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR- 871
            L ++++   I+     ++ KA +L  + ++L      +A  + R            G+ 
Sbjct: 795 MLGEEVKDAFILFGATQEDGKALLLCYINKELTQSKGLDAGKIVREL----------GKY 844

Query: 872 --------PHMAQSGGPNGNKADQAIAGVASFL 896
                   P  A +GG       +A+  V + L
Sbjct: 845 IQGGGGGQPFFATAGGRKPEGIAEALEKVKTLL 877


>gi|313157475|gb|EFR56894.1| alanine--tRNA ligase [Alistipes sp. HGB5]
          Length = 873

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/928 (35%), Positives = 486/928 (52%), Gaps = 93/928 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++PS+ ++   DPTLMFTN+GM  FK+IF G     Y   
Sbjct: 1   MESNKIRRAFLDFFESKGHVIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+S+G YFK+ AI+ AW+LL   + L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLGGVYKLP 120

Query: 122 QRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y TV++  EE        A+  WK+   L  D IIR   +DNFW M ETGPCGPCS
Sbjct: 121 ADRMYATVFEGSEEDGVPFDQEAYDYWKQF--LPEDHIIRGNKHDNFWEMGETGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI FD + E      PG    +    + IEIWNLVFMQF ++       LP  ++DTGMG
Sbjct: 179 EIHFDLRDEAEIAAKPGREMVNAGHPQVIEIWNLVFMQFNRKANGSLEPLPARNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  +LQ K +NYD D+F+  IQ   Q++G  Y  +    V  RVI DHLR+ +F IA
Sbjct: 239 FERLCMILQGKKSNYDTDVFQPTIQRISQLSGKAYGADAKCDVAMRVIADHLRAIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG+TEP +  L+P L  +MG  +PEL   + L
Sbjct: 299 DGQLPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTICKLVPGLVEQMGEQFPELKAQQSL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ +  E+  F +TL  G+ LLDGV+     +  E+++G  AF+LYDT G P+D+ + I
Sbjct: 359 IEKVIEEEEASFLRTLATGINLLDGVIEKTKGEGRELISGKDAFELYDTFGFPIDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +G+ G+D+ +F   L+ Q+ R+R  +        E   F ++E      F GYD L 
Sbjct: 419 AREQGV-GVDLAAFETELQAQKERSRNAAAVDTDDWVE--LFPIRESL----FTGYDTLT 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +                                 ++VFD+TPFY  +
Sbjct: 472 EQVRIARYRRVTSKGKT----------------------------SYQLVFDRTPFYGNS 503

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G       R+ +   +K+  G+ +H  IV+             +D   R+  +
Sbjct: 504 GGQIGDIGYIENADERIAVVATEKE-NGLIIH--IVKELPENPAAGFTAVVDAAKRQSAA 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+H AL  +LG HV Q GS +TP+ LRFD +H + +T  EL+ +E  VN  + 
Sbjct: 561 NNHTATHLMHEALRKVLGQHVEQKGSMVTPEVLRFDFSHFQKMTPQELREVEMLVNRAVR 620

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P+       +E+A   GA  L G KY D+VR+V          S  LCGGTH S+TG
Sbjct: 621 ANYPLEENREATKEEAEKCGAMMLFGEKYGDKVRMVRFGS------SVELCGGTHTSATG 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I++ES+I AG+RRIEA+TG+RA   +   ++ ++ ++ +L   Q  V+  V+++
Sbjct: 675 NIGFFKILNESAISAGVRRIEAVTGERAEQIIYAAEDTMRDISDYLHNPQ--VLQAVKKM 732

Query: 764 WEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKK 819
           +E    L  ++   +R+      D       +   +  I ++ D   + +K +   L+ +
Sbjct: 733 FESNEALSKEVETMRREQVAQWADKIIASTPERRGVQLIATQTDRTPEFVKDLAYCLRAR 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHM---- 874
               ++++ G   + K  + +++ E++     NA  + R +AK+           M    
Sbjct: 793 APK-LVLVQGSVNDGKPMLTVMLGEEITAQGVNAGAVVREAAKL-----------MQGGG 840

Query: 875 ------AQSGGPNGNKADQAIAGVASFL 896
                 A +GG N +    AI      +
Sbjct: 841 GGQAFFATAGGKNPDGLQAAIDKAVELI 868


>gi|300741580|ref|ZP_07071601.1| alanine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380765|gb|EFJ77327.1| alanine--tRNA ligase [Rothia dentocariosa M567]
          Length = 893

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/923 (35%), Positives = 497/923 (53%), Gaps = 65/923 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I   ++EFF+K GH ++PS+SLI  N+P  MFT +GMVPF   F G+E P +   T+VQ
Sbjct: 5   EISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDL 120
           KC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  A++LLT       + L
Sbjct: 64  KCIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDEGGYGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL++T+Y+ D EAF +W K  G   ++I R+   +N+WS  + GP GP SEIF+D+G
Sbjct: 120 DPERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGLERMA 234
               G   G + + +RYIEIWNLVFMQ+++         +    LPK +IDTG+G+ER+A
Sbjct: 180 PAY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGVERLA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFL 285
            +LQ   N Y+ D  + ++ A+ +++G KY G          + V  RV+ DH+RSS  L
Sbjct: 239 MLLQGVENFYESDQVRPVLDAASKLSGKKYHGSESPEDLGYEDDVRMRVVADHIRSSLML 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           IADG+ P+NEGRGY+LRR+MRRA+   RLLG TEP +  L PA    M  A+P +     
Sbjct: 299 IADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVADDFE 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F  T++ G   L+  ++   ++    ++G  AF L+DT+G P+D+  +
Sbjct: 359 RISRIAYAEEKAFLHTIETGTERLEEAVATAKENGSNSVSGAEAFALHDTYGFPIDLTLE 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    G+  +D  +F + + EQR RA+A +        +            + F GY  L
Sbjct: 419 MAAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGAFADLSELRKLVDERGSIFTGYTEL 477

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                         + ++A+++ G  V  A +G K+EVV D+TPFYAE
Sbjct: 478 RT-----------------------ETHLRALLKDGVSVPVAKAGDKIEVVLDETPFYAE 514

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  DTG   G+G  + + DVQ+  +G+ VH A+V  G       +V  +D Q RR  
Sbjct: 515 GGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQRRRDG 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS TH++H AL  +LG+  +Q GS      LRFD    + ++ +  + +E+  N  I
Sbjct: 575 EKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVANLAI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N  V+ R M   +A A GA +L G KY + VR+V +    GG  S  LCGGTHV ++ 
Sbjct: 635 RDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHVGTSS 690

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762
           EI  L +++E S+ +G RR+EA+ G  +  HL  +   +  L   +KV S   +  ++ +
Sbjct: 691 EIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPEKINQ 750

Query: 763 IWEEYRKLQLIHAKR---KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
              + +  +    K    KLQ     L  +   I  V  ++H   E+D+  ++S+   L+
Sbjct: 751 TLAKLKSAEKELEKLRREKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLALDLR 810

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            +  S   ++          V++V T +        A  L RL+A VLGGGGG G+  +A
Sbjct: 811 SRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAASVLGGGGG-GKDDVA 869

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG + +K  +A+  + + + +
Sbjct: 870 QGGGQDASKVSEALDAIRNAIAQ 892


>gi|24216106|ref|NP_713587.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|41018228|sp|Q8F0T4|SYA_LEPIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|24197348|gb|AAN50605.1|AE011499_4 alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 977

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/986 (32%), Positives = 480/986 (48%), Gaps = 108/986 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   
Sbjct: 4   KSVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D     F  D
Sbjct: 64  TSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIEYALDCSVNHFGFD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + ++++TVY +D+EA K+W    G+  ++I R+   DNFW    ++G CGPCSE++ D+G
Sbjct: 120 KNKIWVTVYTDDDEAEKIWLSK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRG 178

Query: 181 ECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A
Sbjct: 179 IEKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------------------- 268
            +LQE  + YD +  + +I   E+++G+ YE                             
Sbjct: 239 LLLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQ 298

Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                  RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L
Sbjct: 299 DSRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKL 358

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILN 383
           +  +     + YPEL +    I +T+  E+E F KTL+ GL  ++ ++     G   I +
Sbjct: 359 VDKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFS 418

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G  AF LY T+G P ++ ++I+  +GL   D   F + LE+ R  +R            K
Sbjct: 419 GADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWK------VNK 471

Query: 444 IWFSLKEKYGATQFIGYDLLRG----SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
           +          T+F+GY  + G    +       K       +D     S+         
Sbjct: 472 VSLMTGLNVDKTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDS 531

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           + V     GQ   +V ++TPFY E GGQ+GD G         ++ D QK+     +H   
Sbjct: 532 KQVSSLKEGQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKE-NDSIIHFGE 590

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G       L   ++   R +L  +HS THLL+ AL T+LG HV Q GS ++P+ LRF
Sbjct: 591 VLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEYLRF 650

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +TS E++ IE  VN+ I +N PV T+ ++ EDA  +GA A  G KY +RVRVV
Sbjct: 651 DFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERVRVV 710

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G  S   CGGTHVS TGEI   +I  ESS  AG RRIE + G         + 
Sbjct: 711 QM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRF 765

Query: 740 EKLKSLASFLKVS------------------------------------------QGNVV 757
            +L      L +                                             N+ 
Sbjct: 766 SELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSENIA 825

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSV 812
            ++EE    + K++   A+R  + N   +     + V       +S I  + D   LK +
Sbjct: 826 TKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSLKGL 885

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            D L+ + ++ +++L   + E  + V+   +E  L   +  +L + + ++L GG GGGRP
Sbjct: 886 SDNLKVREKNLLVILGSRNSENASIVITCSSELTLKGIHCGNLIKTACELL-GGKGGGRP 944

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            MAQ GG      + AIAGV +  K+
Sbjct: 945 DMAQGGGKEKQNLESAIAGVINEAKQ 970


>gi|145348968|ref|XP_001418913.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|313471499|sp|A4S051|SYAP_OSTLU RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|144579143|gb|ABO97206.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 906

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/909 (36%), Positives = 483/909 (53%), Gaps = 53/909 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++ ++IR  FL+F++  GH +LPSSSL+P  DPT++ T +GM+ FK +F GQ +  ++  
Sbjct: 22  NSGAAIRQRFLKFYETRGHAVLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQRERAHERA 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ A Q AW+L T EF L+
Sbjct: 81  TTTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKDACQWAWELATGEFGLN 136

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++++V+ ED+EAF +W+ + G+   +I R+   DNFW+   TGPCGPCSE+++D   
Sbjct: 137 PERVWVSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYDFYP 196

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G      ++  R+IE +NLVFM+  +        L   +IDTGMGLERMA +LQ   
Sbjct: 197 E-RGLEGADLDDDSRFIEFYNLVFMELNRDADGGVTPLKNKNIDTGMGLERMAQILQGVP 255

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   +I  +  + G+ Y   N V     +VI DH R+ S++I+DG+  +N GRG
Sbjct: 256 NNYETDLIMPIINKAASMAGIDYNACNDVQKQQLKVIGDHTRAVSYMISDGVFASNIGRG 315

Query: 299 YVLRRIMRRAMCYARLLGYTE-----PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y++RR++RR +   RLLG             +     +      P++ +    I   L  
Sbjct: 316 YIVRRLLRRVVRNGRLLGIKPEEGASAFTPAIAEVAISMSEGCDPQVAKNSARILAELER 375

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           E+  F KTL RG  +L  ++    K +  L+G  AF LYDT+G PLDI  D+    G+  
Sbjct: 376 EELSFQKTLGRGEEMLAELIETAKKTKTGLSGKDAFTLYDTYGFPLDITADVATEAGIT- 434

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F  A+ EQRS ++A    +       +     E    + FIGY+           
Sbjct: 435 VDLEGFESAMAEQRSMSQAAHQTVDVTAGNALARVADELGAKSTFIGYESTSSDV----- 489

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S V AIV  GE VEEA  G KV++V D TPFYAE+GGQ+GD G
Sbjct: 490 -----------------SNVLAIVCGGESVEEAPEGAKVDIVLDVTPFYAESGGQVGDNG 532

Query: 533 CA-IGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                DG  L+++DVQK   G I VH A V +G ++    +   +D  +RR+   NH+AT
Sbjct: 533 VLHTADGATLEVSDVQKAGGGRIIVHTATVTKGSIKKGSQVTANVDENSRRRAKSNHTAT 592

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG  VSQ GS    D LRFD    K  T A+L  +E+ VN  I+Q+  + 
Sbjct: 593 HLLQSALKKVLGEDVSQAGSLCGFDRLRFDFNSPKAPTEAQLLEVENLVNGWISQSAALT 652

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M    A   GA  + G KY D VRVV V        S  LCGGTHVS+T EI    I
Sbjct: 653 AEEMPIAAAKDKGATMMFGEKYGDVVRVVDVPG-----ISMELCGGTHVSNTAEIGGFKI 707

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SE+ I +GIRRIEA+ G      L  +D  +K LAS L+V    + GRV  + E+ R  
Sbjct: 708 LSEAGIASGIRRIEAVAGAGVVELLQQRDAVVKQLASALRVPPEEITGRVSSLQEDLRAT 767

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           Q +    + +L V           ++ +   +   +  VD   LK   + L  ++  G  
Sbjct: 768 QKLAESLRGELAVAKAGALVSQAREVGEAKVLVARLDGVDPAALKVAAENLAAQLGDGAA 827

Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           +++G +      ++ +  + +       A  +   +AK  GGGGG G+P  AQ+GG +  
Sbjct: 828 IVLGSANGANVGLVALFDDKVQKDGGLKAGQVLGAAAKKCGGGGG-GKPGFAQAGGRDAT 886

Query: 884 KADQAIAGV 892
           + D A+   
Sbjct: 887 QLDAALDEA 895


>gi|307210107|gb|EFN86804.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 972

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/973 (31%), Positives = 475/973 (48%), Gaps = 88/973 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            +   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 5   MSGKQIRQAYIDFFKNKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 64

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT+
Sbjct: 65  KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICSWAWEFLTE 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +  DE        E  +LW  + G+ A  ++     DNFW M ETGP
Sbjct: 125 TLKLPADRLYVTYFGGDEKNGLAPDNECKELWLSL-GIPASHVLPGNMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+Q+ ++       LPK  ID G+
Sbjct: 184 CGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQYNREADGNLKPLPKKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q K  NYD DLF  L  A E+ TG                 + +RV+ DH 
Sbjct: 243 GLERLVSVIQNKRANYDTDLFMPLFAAIEKGTGAPPYQGKIGTDDVNRVDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTITIALADGGIPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGEVFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I + +  E+ +F KTL RG  LL+  ++ L  ++ + GDVA++LYDT+G P+
Sbjct: 363 EVTKDPQSIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESNDTVPGDVAWRLYDTYGFPI 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  ID+  +    EE + +A+  S     G  ++I   +   +  T+  
Sbjct: 423 DLTQLMTEEKGLK-IDMAGY----EESKKQAQLISQNKVGGVDDQINLDV---HSITELQ 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDL-TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +       K + K+       +         V  + +    V++  SG++V ++ D+
Sbjct: 475 ERGIKPTDDSPKYNYKITSTTTYKEYEFAPCIGTVIELRRAKTFVDQVSSGEEVGILLDR 534

Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           T FYAE GGQ+ D G  +    +   ++I +VQ +A G  +H   V  GIL+    +   
Sbjct: 535 TNFYAEQGGQIYDEGFLVKVDDEATEIRIKNVQVRA-GYVLHIGTVGEGILKKGDQVHAN 593

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   RR +  NHSATH L+HAL  +LG+   Q GS + PD LRFD T+  P+T+ ++K+
Sbjct: 594 VDTTRRRLVMANHSATHALNHALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTEQVKN 653

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH---- 689
            E+  ND+I  N  +  +  N   A    G  A+    Y D VRVVS+      +     
Sbjct: 654 AENITNDMIKDNKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVVSMGVPIEELEKNPL 713

Query: 690 -------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                  S   CGGTH+  TG I    I SE +I  GIRRI A+TG  A   L       
Sbjct: 714 SPVATQTSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKALKKATLLQ 773

Query: 743 KSL--------ASFLKVSQGNVVGRVEEIWEE--------YRKLQL-----------IHA 775
             L        A     +    V ++ E+ E+        +RK ++              
Sbjct: 774 NQLTQLQTTIEADKCGANSKEYVKKIVELTEDISHAVIPGWRKDEMRGMLKKLKKSLDDK 833

Query: 776 KRKLQLNVEDLSCHKIADV---NFMSHIISEV-----DSKELKSVMDALQKKIQSGIIML 827
            R  +  + ++       +        ++ EV     ++K L S +  ++        +L
Sbjct: 834 DRAAKAAIANMVVETAQSIIQSKVGCQVLVEVLEAYSNTKALDSALKKIRAVSPETSALL 893

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + + ++ KK   L  V +  + +   A +  +  A ++  G GGG+   AQ+ G +    
Sbjct: 894 ISVDQDVKKIFALSSVPKSAVSKGLKANEWIQAIAPMM-QGKGGGKSESAQASGADITCL 952

Query: 886 DQAIAGVASFLKK 898
           ++ ++    F  +
Sbjct: 953 NEIVSKANEFANQ 965


>gi|311894842|dbj|BAJ27250.1| putative alanyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 888

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/922 (35%), Positives = 501/922 (54%), Gaps = 61/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SL+  +DPTL+  N+GMVPFK  F G+ KP +   
Sbjct: 1   MESAEIRRRWLRFFEERGHTVVPSASLVA-DDPTLLLVNAGMVPFKPYFLGEIKPQFSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH +FF+M GNFSFG YFKE AI+ AW+LLT      
Sbjct: 60  TSVQKCVRT----LDIEEVGKTTRHGSFFQMCGNFSFGDYFKEGAIKFAWELLTSPVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  RL+ITVY +D+EA ++W+++ G+ A++I R+   DNFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPERLWITVYQDDDEAERIWREVIGVPAERIQRLGMKDNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQE-----RFILPKMSIDTGMGL 230
           +D+G    G   G +  GERY+EIWNLVFMQ+E+     +        LP  +IDTG+GL
Sbjct: 176 YDRGPAY-GEEGGPAVNGERYLEIWNLVFMQYERGHGDGKDGFEILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A VLQ   N ++ID  + ++  + ++TG  Y  ++   V+ RV+ DH R++  L+ D
Sbjct: 235 ERLAAVLQGVDNLFEIDTSRMILDRAAELTGHTYGADHRSDVSLRVVTDHFRTALMLVGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRI+RRA+   RLLG TEP+   L+      M   YPEL   +  IE
Sbjct: 295 GVTPGNEGRGYVLRRILRRAIRNMRLLGATEPVAKDLIDISIKAMAPQYPELETDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
             + +E+  F +TL  G  LLD  ++   +    +L+G+ AFKL+DT+G P+D+  ++  
Sbjct: 355 TVVVAEENAFLQTLRSGTSLLDAAVTETKQSGGAVLSGEQAFKLHDTYGFPIDLTLEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F + ++EQR RA+A +    +G  +   +  + ++ GA+ F GY    G
Sbjct: 415 EQGL-QVDEAGFRRLMQEQRDRAKADAKAKKTGHADVAAYREVADRAGASVFTGYAHTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V  ++  G     A  G +VE++ D+TPFYAE G
Sbjct: 474 -----------------------EATVVGLLVDGVPSPAATEGDEVELILDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +++ DVQ+   G+ VH   V  G +    S   TID   RR +S
Sbjct: 511 GQLADHGRIRLDSGAVVEVRDVQQPVPGVIVHSGGVLFGEVVLGASAYATIDTDRRRAVS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS   P   RFD      +  + L  +E  +N+++ 
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENAPGRFRFDFGSPAAVPGSVLTDVEQKINEVLV 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M  ++A   GA A+ G KY D VRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVTAEVMTMDEARKQGAIAMFGEKYGDSVRVVTI-----GDFSKELCGGTHVGNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A   L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYKFLAREHTVVAQLTELVKGRPEELPEKISGML 745

Query: 765 EEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQK 818
            + +  +    + + +  L           DV  ++ + + V     + EL+ ++  ++ 
Sbjct: 746 AKLKDAEKEIERFRAEKVLQAAAGLAEGAEDVRGVALVAARVGDGTGADELRKLVLDVRA 805

Query: 819 KIQSGIIMLVG-ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           ++ S   ++        +   +I   ED   R   A +L R +AK LGGGGG G+  +AQ
Sbjct: 806 RLGSRPAVVAAFTVANDRPLTVIATNEDARGRGIKAGELVRAAAKTLGGGGG-GKDDVAQ 864

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
            GG N      AI  V + + +
Sbjct: 865 GGGTNPAAVADAIEAVRALVAE 886


>gi|303236524|ref|ZP_07323109.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302483272|gb|EFL46282.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 897

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/933 (34%), Positives = 487/933 (52%), Gaps = 88/933 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +F +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 12  MMTANEIRDSFKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 71

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L +   L
Sbjct: 72  RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKENAIDYAWEYLVEVLKL 131

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D + LY+TV++         D+EA   W K   L  D II    +DNFW M ETGPCGPC
Sbjct: 132 DPKDLYVTVFEGSPEEGIARDDEAASYWAK--HLPEDHIINGNKHDNFWEMGETGPCGPC 189

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IEIWN+VFMQF++++      L    IDTGM
Sbjct: 190 SEIHVDSRSAEEKAKVPGRELVNKDDPQVIEIWNIVFMQFQRKSDGTLEPLAMNVIDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHR 273
           G ER+  +LQ K +NYD D+F+  I+  E+++G KY               +    +  R
Sbjct: 250 GFERLVRMLQGKNSNYDTDIFQPTIKEIERLSGKKYGFTTPSGKEGEGKTEQEKIDIAMR 309

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           V+ DH+R+ +F IAD  LP N   GYV+RRI+RRA+ YA   L   E  +  LL     E
Sbjct: 310 VVADHMRAVAFSIADSQLPGNAKAGYVIRRILRRAVRYAYTFLEQKEAFIYKLLNTFIHE 369

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKL 390
           MG+AYPEL   + LI   ++ E++ F +TL++G+ LL   +  +       L+G  AF+L
Sbjct: 370 MGNAYPELPAQRELIARVIKEEEDSFLRTLEKGINLLTNAMDEMKAQGKTELDGKEAFRL 429

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   +D   F   + +Q++RAR  ++          W  LKE
Sbjct: 430 FDTYGFPLDLTELICRENGFT-VDEKQFEAEMAQQKARARNAAV-----VENGDWVVLKE 483

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G  +F+GYD       +   RKV  +K                               
Sbjct: 484 --GEQEFVGYDYTEYECHILRYRKVTQKKNTF---------------------------- 513

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   + I D  K+     +H  IV++     E  
Sbjct: 514 FEIVLDHTPFYGEMGGQVGDQGVLVSEDETIDIIDT-KRENNQSIH--IVKQMPKNVEAD 570

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++ D LRFD +H + +T  
Sbjct: 571 FMACVDTDKRDASAANHTATHLLDYALKQVLGDHCEQKGSYVSADTLRFDFSHFQKVTDE 630

Query: 631 ELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VND+I Q+L          E+A   GA AL G KY D+VRV+S         
Sbjct: 631 ELRQVERMVNDMIRQDLKCDEHRNTPLEEAKKMGAVALFGEKYGDKVRVISFGP------ 684

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H +STG I    IV+ESS+ AGIRRIEA+TG++    +   ++ ++ L +  
Sbjct: 685 SCEFCGGIHATSTGRIGFFKIVNESSVAAGIRRIEALTGEQCEEAVYELEDTMRDLKAMF 744

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEV 804
             +  ++   V +  +E+  ++      + Q      N    S   +  V  +  ++  V
Sbjct: 745 N-NAKDLKSVVAKYIQEHDAMKKEMESFRQQAVSRMANGLVESAETVNGVKVVKAVLP-V 802

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKV 862
           +    K ++  +++ I   ++ ++G + E K  + I++++D++     NA  + R +AK+
Sbjct: 803 EPASAKDIVFKVREAIPEKLVCVLGSTHENKPLLSIMLSDDMVKDHELNAGKIIREAAKL 862

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           + GG GGG+PH AQ+GG +      A+  V   
Sbjct: 863 IKGG-GGGQPHYAQAGGKDVEGVSAAVEKVIEL 894


>gi|302345784|ref|YP_003814137.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302149231|gb|ADK95493.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 887

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/935 (35%), Positives = 498/935 (53%), Gaps = 90/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L     
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVLH 120

Query: 120 LDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD + LY+TV++ D        +EA   W+K      + I+    +DNFW M +TGPCGP
Sbjct: 121 LDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDTG
Sbjct: 179 CSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVNH 272
           MG ER+  ++Q K +NYD D+F  +I   E+++G KY     EG+N           +  
Sbjct: 239 MGFERLVRLMQGKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L  
Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVR 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFK 389
           EMG+AYPEL   + LI   ++ E++ F +TL++G++LL+G +  L       L+G  AF+
Sbjct: 359 EMGTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQLDGKEAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ +E+Q++RAR       +      W  L+
Sbjct: 419 LFDTYGFPLDLTELICAENGYT-VDEKQFNEEMEQQKARARNA-----AAVENGDWEVLR 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G  +F+GYD       +   RKV  +K                              
Sbjct: 473 E--GEQEFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   + + D  K+     VH  IV+      E 
Sbjct: 504 -YELVLDYTPFYGEMGGQVGDQGVLVSEDETINVIDT-KRENNQSVH--IVKELPKNLEA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT 
Sbjct: 560 DFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN++I ++ P+        E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L S 
Sbjct: 675 -SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKSM 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE 803
              +  ++   + +  EE   ++      + Q               +  V+ +  ++  
Sbjct: 734 FN-NAKDLKAVLTKFVEENDSIKKELESFRAQAVSRAAKNMVEHAETVNGVHIVKTVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAK 861
           +D    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +AK
Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYDLNAGKIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ GG GGG+PH AQ+GG N +    A+  V   +
Sbjct: 852 LIQGG-GGGQPHYAQAGGKNADGIRSAVDKVIELI 885


>gi|328781428|ref|XP_395392.3| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Apis
           mellifera]
          Length = 1194

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/971 (32%), Positives = 478/971 (49%), Gaps = 88/971 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M     IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P    
Sbjct: 4   MMTAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGIVDPNSDM 63

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT
Sbjct: 64  AKLVRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICTWAWEFLT 123

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            +  L   RLY+T +  DE        E  ++W  + GLS   ++     DNFW M ETG
Sbjct: 124 VKLKLSSDRLYVTYFGGDEKNNLKPDEECKQIWLSL-GLSPTHVLPGNMKDNFWEMGETG 182

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGP SEI +D+           +++    +EIWNLVF+QF ++N     +LPK  ID G
Sbjct: 183 PCGPSSEIHYDRI-GNREAAHLVNQDDPDVLEIWNLVFIQFNRENDGNLKLLPKKHIDCG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDH 278
           +GLER+ +++Q K+ NYD DLF  L  A ++ T         G +      + +RV+ DH
Sbjct: 242 LGLERLVSIIQNKSANYDTDLFMPLFDAIQKGTKAPSYQGKVGKEDINGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +
Sbjct: 302 ARTITIALADGGVPDNTGRGYVLRRILRRAVRYAIEKLNAKPGFFGSLVNVVVDLLGDVF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  L    IL GDVA++LYDT+G P
Sbjct: 362 PEVTKDPQHIIDIINEEETQFLKTLSRGRNLLNRTIVKLESSNILPGDVAWRLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ Q +   +GL  +D+I + +A    +  A+  S        ++I   +   +  T+ 
Sbjct: 422 FDLTQLMAEEKGLK-VDVIGYEEA----KKEAQLISQNKSGEVDDQINLDI---HAITEL 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDL-TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +   +   K + KV+  K   +       S + A+ +    V+E  SG++V ++ D
Sbjct: 474 QNEKIKPTNDIPKYNYKVISNKIYEEYEFAPCFSTIIALRRAKTFVDEVSSGEEVGILLD 533

Query: 517 QTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           QT FYAE GGQ+ D G       +   + I +VQ +  G  +H  IV +G L+    +  
Sbjct: 534 QTNFYAEQGGQIYDEGFLTKIDDEDSEVHIKNVQVR-GGYILHIGIVSQGKLKKNDKVFS 592

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR L  NH+ATH+L++AL  ILG+ V Q GS + PD LRFD T+   +T+ +++
Sbjct: 593 NIDTTRRRLLMSNHTATHVLNYALREILGTEVDQKGSLVAPDRLRFDFTNKGAMTTEQIR 652

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
            +E+  N+II +N  V  +  N   A    G  A+    Y D VRVVS+           
Sbjct: 653 KVEEITNNIINENKMVYAKECNLGLAKTIQGLRAMFEETYPDPVRVVSIGIPVEDLEKNP 712

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---Q 738
              D    S   CGGTH+  TG I    IVSE +I  GIRRI A+TG  A          
Sbjct: 713 LSSDALKTSVEFCGGTHLHYTGHIKNFIIVSEEAIAKGIRRIVALTGPEAIKAQKKTSML 772

Query: 739 DEKLKSL-----ASFLKVSQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVED 785
              L  L     A    ++    + ++ E+ ++        ++K ++    + L+  ++D
Sbjct: 773 QNYLDELQITIEADKNGINTKEHIKKIIELTDDVSHAIISSWKKDEIRKMLKDLKKILDD 832

Query: 786 LSCHKIADVNFMS--------------HIISEV-----DSKELKSVMDALQKKIQSGIIM 826
                   +  +                ++ E+     ++K L S +  ++        +
Sbjct: 833 KERAIKTAITNVVLDNIQQIIQQNIGCLVLVEILQAYSNTKALDSALKKIRTISPETSAL 892

Query: 827 LVGISKE-KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L+ I  + KK   L  V++  +     A +  +     L  G GGG+   AQ+ G N + 
Sbjct: 893 LISIDPDAKKIFALSSVSKFAINKGLKANEWIQEIVP-LMEGKGGGKSESAQASGTNISC 951

Query: 885 ADQAIAGVASF 895
             + I    +F
Sbjct: 952 VTKLIYTAKNF 962


>gi|88658226|ref|YP_507768.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123492839|sp|Q2GFL5|SYA_EHRCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88599683|gb|ABD45152.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 887

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/918 (41%), Positives = 551/918 (60%), Gaps = 60/918 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  VS++R +F++FF KNGH++ PSS LI  +DP+L+FTN+GMV FK +FT       
Sbjct: 2   MKNNLVSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANV 61

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE 
Sbjct: 62  NTATSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKEL 121

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L + RLY TVY +D+EAF LWKKISG+S  +II+ITT+DNFWSM  TGPCGPCSEIF+D
Sbjct: 122 SLSKDRLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYD 181

Query: 179 QGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ + GGLPG   E+G R+ EIWNLVFMQ++++   E  +LPK  IDTGMGLER+A V+
Sbjct: 182 YGDNVKGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVM 241

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NYDI LFK LI AS++ +G      N + HRVI DH+RS++FLIA+G+ P NEGR
Sbjct: 242 QGVHDNYDISLFKALIAASKEQSG---NSTNELAHRVIADHVRSAAFLIAEGLTPGNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLR 352
            Y+LRRI+RRA  Y  +L Y + LM  + P L  E     M   YPELI AK LI   L+
Sbjct: 299 NYILRRIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILK 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F  TL R L LL+  L +L   +IL+GD+ FKLYDT+G P+DI  DI+  +G+  
Sbjct: 359 IEEENFKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK- 417

Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            D   F   + +Q+ R++  HS+       E+ W  +KE+ G+T+F+GY+          
Sbjct: 418 FDEQGFYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKFVGYE---------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             + V +IV  G + VE A  G KV ++ D TPFYAE+GGQ GD
Sbjct: 468 -------------RYDTKATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGD 514

Query: 531 TGC----------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            G              +    ++ D +K  + +++H  I+++G L     +   ID + R
Sbjct: 515 VGIFNVIVRQEKELFANDNIAEVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R L  NHSATHLLH+ L + + S + Q GS ++ + LRFD ++   +T  +L  IED + 
Sbjct: 575 RNLCANHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMY 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
            +I+ N PV++ + + +DA+A GA AL   KY +  VRVVS++       S  LC GTHV
Sbjct: 635 SLISGNNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIK------DSKELCCGTHV 688

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T EI    IVSE+SI  GIRRIEA+TG+ A  +   Q++ L S+A  +KV   NV+ +
Sbjct: 689 KYTSEIGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQ 748

Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           ++++ ++ ++L+   +     + N++ ++  KI +V+F+   +S +    ++  ++   K
Sbjct: 749 IDKLDKKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---K 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + +  I+L      +    ++ V   L  +  AVD  ++   ++    GGG   +AQ  
Sbjct: 806 HLTADRIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMVKS-KGGGNAQLAQIN 864

Query: 879 GPNGNKADQAIAGVASFL 896
           G    + D  ++ V S L
Sbjct: 865 GEYVKEID-IMSNVKSKL 881


>gi|318040735|ref|ZP_07972691.1| alanyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 889

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/907 (37%), Positives = 499/907 (55%), Gaps = 53/907 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL+F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ++      T
Sbjct: 18  TGAEIRAAFLDFYEQRGHKPMASASLVP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRAT 76

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T  F L  
Sbjct: 77  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLSP 132

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ ED+EA  +W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 133 KNLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPE 192

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   N
Sbjct: 193 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQAVPN 251

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ + Q+ G+ Y   +     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 252 NYETDLIYPLIETAAQLAGVAYPALDDKGKTSLKVIGDHSRAITQLICDGVTASNLGRGY 311

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF 
Sbjct: 312 ILRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLVERREVILAELQREEARFL 371

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ ++I    GL   D+  F 
Sbjct: 372 ETLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLTM-DLEGFE 428

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A ++ +     E I   +     AT F GY+LL  S             
Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAIDQ-VAADLEATAFRGYELLEQS------------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G   GD +
Sbjct: 475 ----------SCVLALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDEL 524

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + I  V +    +FVH   +ERG+L     +   +D   RR+   NH+ATHLL  AL  
Sbjct: 525 IVAIDAVSRNRS-VFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAALKQ 583

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ++   + Q GS +  D LRFD    + ++++EL+ IE  +N  I++   +  + M  E A
Sbjct: 584 VVDPGIGQAGSLVDFDRLRFDFHCPRAVSASELEQIEVLINGWISEAHSLEVQEMAIEKA 643

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSES + AG
Sbjct: 644 KAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSESGVAAG 698

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IH 774
           IRRIEA+ G    ++L  +D  +K L    K     +V RV ++ +E +  Q        
Sbjct: 699 IRRIEAVAGPAVLAYLNERDGVVKQLGERFKAQPAEIVDRVVQLADELKASQKALAAARE 758

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
                +          + +   +   +  V+   L+S    L  ++  G  +++G   + 
Sbjct: 759 ELALAKSAALAGLAVAVGEHQLLVARLDGVEGGGLQSAAQGLADQLGDGAAVVLGGLPDP 818

Query: 834 ---KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
               K  ++    + +      A       AK  GGGGG GRP++AQ+GG +G   D A+
Sbjct: 819 ADLGKVILVASFGKAVIAAGPKAGAFIGGIAKACGGGGG-GRPNLAQAGGRDGAALDGAL 877

Query: 890 AGVASFL 896
               + L
Sbjct: 878 EQARTEL 884


>gi|325853118|ref|ZP_08171267.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325484492|gb|EGC87413.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 888

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/936 (34%), Positives = 499/936 (53%), Gaps = 90/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY               E    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   + + L+G  AF
Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  L
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAQQKARARNAAV-----VENGDWEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV++     +
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNVK 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+        E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS 802
               +  ++   +    EE   ++    K + Q               +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVEMVDGVHVIKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   + +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYDNRPQLSIMLSDDMVKEHGLNAGKIIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           K++ GG GGG+PH AQ+GG + +    A+  V   +
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELI 886


>gi|300173639|ref|YP_003772805.1| alanyl-tRNa synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299888018|emb|CBL91986.1| alanyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 893

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/927 (36%), Positives = 500/927 (53%), Gaps = 70/927 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           N S IR  FL+FF   GHE++PS +LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   NSSQIRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSAVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE  I  AW+LLT  K + L
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEGIPWAWELLTSPKWYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+  LY+TVY +D EA K+W++ + +    I  +   DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKELLYVTVYPKDTEAKKIWQEKTDIPEGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
           +          E     E ERY+EIWN+VF QF              LP  +IDTGMGLE
Sbjct: 178 KDFQDLPDNDPEMYPGGENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG----NNIVNHRVIVDHLRSSSFLI 286
           R+ +V Q+   N+D DLF  +I+A+E ++ G KY+      +  + +VI DH+R+ +F I
Sbjct: 238 RVVSVFQKGRTNFDTDLFLPIIKATEALSDGFKYDSLVNSESNTSFKVIADHIRAVTFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYV+RR++RRA+ + + LG T   +  L+P +   M S YPE+++    
Sbjct: 298 GDGALPSNEGRGYVIRRLLRRAVLHGQKLGITGEFLTQLVPVVGDIMQSYYPEILENTPK 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I++ + +E++RF  TL  GL LL+ V++         L+G  AFKL DT+G PL++ Q+ 
Sbjct: 358 IQKIIAAEEKRFNATLTGGLALLNQVINQAKAEGKTQLSGIDAFKLSDTYGFPLELTQEQ 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                L  +DI  FN AL+ QR+RARA      S   +     L +   A+Q++G+ +  
Sbjct: 418 AAEADLT-VDIQGFNDALQAQRTRARAARANDKSMGIQNAV--LTDLKVASQYVGWSVTA 474

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE----EAVSGQKVEVVFDQTPF 520
                                   + I+  I Q  + V+     AV GQK+++VFD+TPF
Sbjct: 475 VDN---------------------AKIMAIIGQDDQGVDALLSSAVKGQKLQLVFDKTPF 513

Query: 521 YAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ D G  +    ++  ++ DVQ    G  +H   V     +   ++ L +D  
Sbjct: 514 YAEMGGQVADYGEVLTATGKVIARVIDVQNAPNGQHIHTVDVL-CDFKLTDTVNLQVDMA 572

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
               +S NH+ATH+L  +L  I+G  + Q GS + P+ LRFD T+  P++   ++ IE  
Sbjct: 573 RHIAVSKNHTATHMLDQSLRNIIGGDIHQAGSLVEPEYLRFDFTNEGPVSEENIEKIETL 632

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +N  IA NLPV     + E A   GA A+ G KY   VRVVS+     G  +    GGTH
Sbjct: 633 MNHEIANNLPVSWLETDIESAKKMGAVAVFGEKYGALVRVVSI-----GDFNKEFDGGTH 687

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVV 757
           V ST E+ L  IVSES I AG+RRIEA+TG +A +    ++  LK++A+ +K  +  +V 
Sbjct: 688 VKSTAELGLFKIVSESGIGAGVRRIEAVTGLQAIALYQAEENALKAIATTVKAQRLTDVP 747

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSV 812
            +V ++  E +  Q      + QL                  ++++  +       L+ V
Sbjct: 748 SKVADMQLELKATQRKLESLESQLANAAATEVFSDVKTSHGHSYITAQLQVSGMDGLRQV 807

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGR 871
            D  +    S +++L     + + ++++  +         A +L +  A  +GGGGG GR
Sbjct: 808 ADNWKMSYPSDVLVLAATV-DGRVNLIVTASPSANAAGIKAGELIKAIAPRVGGGGG-GR 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P MAQ+GG N     +A A VA+FL K
Sbjct: 866 PDMAQAGGKNPAGIAEAFADVANFLAK 892


>gi|281350877|gb|EFB26461.1| hypothetical protein PANDA_021488 [Ailuropoda melanoleuca]
          Length = 976

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/979 (32%), Positives = 480/979 (49%), Gaps = 100/979 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ +++      LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGDDLIMLDI---YAIEELRE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +                 + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYNYH--SDSSGSYAFESTVATVMALRRDKMFVEEVCTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G LR    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVR-GGYVLHIGTI-YGSLRVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N +I    PV T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       +VSE +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
             SL+   + +K   V   +V   + ++ E        +++K +     + L+  ++DL 
Sbjct: 771 KNSLSIMEAKVKAQTVPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKIMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSK--------ELKSVMDALQKKI 820
               ADV                     +  + S   +K         L   +   +   
Sbjct: 831 RASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKATRGGGEGALNEALKLFKTHS 890

Query: 821 QSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ML  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ 
Sbjct: 891 PQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQAT 949

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N     +A+   ASF +
Sbjct: 950 GKNVGCLQEALQLAASFAQ 968


>gi|158313530|ref|YP_001506038.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158108935|gb|ABW11132.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 892

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/913 (35%), Positives = 482/913 (52%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G  K  +   
Sbjct: 13  MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLKAPWNRA 71

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D+DNVGRT RH +FF+M GNFSFG YFK  AI  A++L+   +  +
Sbjct: 72  TSVQKCVRTV----DIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFN 127

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 128 PDDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 185

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLERMATV 236
              G   G   + +RY+EIWNLVFMQF +    E        LP  +IDTGMGLERMAT+
Sbjct: 186 AY-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 244

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  + ++ V  RV+ DH R+++ LI+DG+ P+N
Sbjct: 245 LQGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSN 304

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L   +   MG  YPEL+     I     +E
Sbjct: 305 EGRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  
Sbjct: 365 ETAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT- 423

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +    G T F GY  L        
Sbjct: 424 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 475

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQ--QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          G  S +  IV    G+ +  A  G++V ++ D TPFYAE+GGQ  
Sbjct: 476 ---------------GRESGIVGIVGIGDGDSLTAAGEGEEVGILLDATPFYAESGGQEA 520

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG   ++ DVQ+    + +H   V  G LR    +   +D + RR +S +H+A
Sbjct: 521 DLGRIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTA 580

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN+I  ++L V
Sbjct: 581 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEV 640

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              + ++E+A   GA AL G KY DRVRVV     D G ++  LCGGTHV+S+ ++  + 
Sbjct: 641 RWYVTSQEEARRLGAMALFGEKYGDRVRVV-----DVGDYARELCGGTHVASSAQLGAIK 695

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+EA+ G  A   L  +   +  L+S LK     +  RV +I    R 
Sbjct: 696 LLSESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADIVGRLRD 755

Query: 770 LQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSG 823
            +    + + Q               +  V  ++  + +   + +++ +   ++ ++   
Sbjct: 756 AEKELERLRAQAVLAGSAALAAGAEDVGGVALVTAQVPAGTPADDVRLLALDVRGRLAGR 815

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             ++  +     A V+            A DL R S   LGG GG G+P +AQ G  + +
Sbjct: 816 PAVVAVVEAAGAAVVVATDETARTRGLRAGDLVRHSWAALGGKGG-GKPDVAQGGRGDAD 874

Query: 884 KADQAIAGVASFL 896
              +  A +   +
Sbjct: 875 MIPKVFARLRELV 887


>gi|45656657|ref|YP_000743.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|48428508|sp|P61703|SYA_LEPIC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|45599893|gb|AAS69380.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 977

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/986 (32%), Positives = 480/986 (48%), Gaps = 108/986 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   
Sbjct: 4   KSVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRA 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+ QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D     F  D
Sbjct: 64  TSCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGNYFKEEAIEYALDCSVNHFGFD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + ++++TVY +D+EA K+W    G+  ++I R+   DNFW    ++G CGPCSE++ D+G
Sbjct: 120 KNKIWVTVYTDDDEAEKIWLSK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRG 178

Query: 181 ECIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
               G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A
Sbjct: 179 IEKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVA 238

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------------------------- 268
            +LQE  + YD +  + +I   E+++G+ YE                             
Sbjct: 239 LLLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQ 298

Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                  RV+ DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L
Sbjct: 299 DSRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKL 358

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILN 383
           +  +     + YPEL +    I +T+  E+E F KTL+ GL  ++ ++     G   I +
Sbjct: 359 VDKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFS 418

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G  AF LY T+G P ++ ++I+  +GL   D   F + LE+ R  +R            K
Sbjct: 419 GADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWK------VNK 471

Query: 444 IWFSLKEKYGATQFIGYDLLRG----SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
           +          T+F+GY  + G    +       K       +D     S+         
Sbjct: 472 VSLMTGLNVDKTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDS 531

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           + V     GQ   +V ++TPFY E GGQ+GD G         ++ D QK+     +H   
Sbjct: 532 KQVSSLKEGQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKE-NDSIIHFGE 590

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G       L   ++   R +L  +HS THLL+ AL T+LG HV Q GS ++P+ LRF
Sbjct: 591 VLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEYLRF 650

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +TS E++ IE  VN+ I +N PV T+ ++ EDA  +GA A  G KY +RVRVV
Sbjct: 651 DFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERVRVV 710

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G  S   CGGTHVS TGEI   +I  ESS  AG RRIE + G         + 
Sbjct: 711 QM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRF 765

Query: 740 EKLKSLASFLKVS------------------------------------------QGNVV 757
            +L      L +                                             N+ 
Sbjct: 766 SELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSENIA 825

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSV 812
            ++EE    + K++   A+R  + N   +     + V       +S I  + D   LK +
Sbjct: 826 TKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSLKGL 885

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            D L+ + ++ +++L   + E  + V+   +E  L   +  +L + + ++L GG GGGRP
Sbjct: 886 SDNLKVREKNLLVILGSRNSENASIVITCSSELTLKGIHCGNLIKTACELL-GGKGGGRP 944

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            MAQ GG      + AIAGV +  K+
Sbjct: 945 DMAQGGGKEKQNLESAIAGVINEAKQ 970


>gi|227488808|ref|ZP_03919124.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542195|ref|ZP_03972244.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091230|gb|EEI26542.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182024|gb|EEI62996.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 889

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/918 (35%), Positives = 488/918 (53%), Gaps = 61/918 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F + F   GH  +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P ++  
Sbjct: 1   MQTHEIRERFTKHFVDAGHTPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQNPPFENG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTGSQD 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              + LD  RL++TVY +D+EA ++W+   G+  ++I R+   DN+WSM   GPCGPCSE
Sbjct: 116 EGGYGLDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMADNYWSMGIPGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+E+WNLVFMQ E+         +    LPK +IDTGM
Sbjct: 176 IYYDRGPEY-GKDGGPVADDNRYLEVWNLVFMQNERGEGTGKDNFEILGPLPKKNIDTGM 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285
           G+ER+A +LQ   N Y+ DL + +I A+E++TG  Y      + +  RVI DH R++  +
Sbjct: 235 GVERIACILQGVDNVYETDLLRPVIDAAERLTGSTYGEGSHEDDIRFRVIADHSRTAMMI 294

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG+ P NEGRGY+LRR++RR +  ARLLG     M   +  +   M  +YPE+ +A+ 
Sbjct: 295 ILDGVTPGNEGRGYILRRLLRRIIRSARLLGAKGNTMETFITTIMDTMTPSYPEIEKARE 354

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQD 403
            I     +E++ F +TL+ G  L +  +S +       ++G+ AF L+DT+G P+D+  +
Sbjct: 355 RILTVAVNEEKAFLRTLESGTELFEQEVSAVKGAGKTEISGEKAFTLHDTYGFPIDLTLE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   +GL  +D   F+  + EQ++RA+A +     G  +   +        T+FIGYD L
Sbjct: 415 MAREQGLT-VDEEGFHSFMAEQKARAKADNQAKKHGAADLTVYREFVDNHPTEFIGYDQL 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        S V  +V  GE +  A  G +VEV+ + TP YAE
Sbjct: 474 EG-----------------------ESPVIGLVAGGEKIHSAKEGDEVEVIVEATPMYAE 510

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AGGQLGD G        L + DVQK  + +++H + V  G      +  L +D Q R   
Sbjct: 511 AGGQLGDRGTMTIGDATLNVNDVQKIGKKLWLHKSTVTAGGFEVGDTAALHVDEQWRHAA 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HSATHL+H AL   LG    Q GS   P  LRFD  +++ +T  +L+ IE   N+ +
Sbjct: 571 RQAHSATHLIHAALRQTLGPTAVQAGSMNKPGYLRFDFNYAQALTPKQLEEIERITNEAV 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +  V T  M  E+A A GA AL G  Y D VRVV +    GG  S  LCGGTHV+ + 
Sbjct: 631 DTDWTVNTNEMPLEEAKAMGAMALFGENYGDIVRVVEI----GGPFSMELCGGTHVARSA 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + ++ ESS+ +G+RRIEA +G  + S+L  +    + LA+ LK    ++  R+ ++
Sbjct: 687 QIGPVAVLGESSVGSGVRRIEAYSGLNSFSYLSKERSLAEGLATALKTPSDDLPERIAQL 746

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817
            E+ +  +        +   + +     S  K      ++  + E V +K+L+++   L 
Sbjct: 747 TEKLKAAEKEIENLHAKALADRVGALVDSAKKAGSFELIAENLGETVGAKDLRAMAQDLA 806

Query: 818 KKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++   S +++L G    K    +      +     A D+ ++  + +GG GG G+P++A
Sbjct: 807 NRLGSCSAVVVLGGSQGGKAPFAVAATAAAVDAGIKAGDVVKVIGEHVGGKGG-GKPNLA 865

Query: 876 QSGGPNGNKADQAIAGVA 893
           Q  G N      A   V 
Sbjct: 866 QGSGSNPAGFTAAFDAVT 883


>gi|327314000|ref|YP_004329437.1| alanine--tRNA ligase [Prevotella denticola F0289]
 gi|326944684|gb|AEA20569.1| alanine--tRNA ligase [Prevotella denticola F0289]
          Length = 888

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/936 (35%), Positives = 499/936 (53%), Gaps = 90/936 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
            T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L    
Sbjct: 61  RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA   W+K      + I+    +DNFW M +TGPCG
Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PCSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDT
Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY               E    + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L 
Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAF 388
            EMG+AYPEL   + LI   ++ E++ F +TLD+G+ LL+G +  L   + + L+G  AF
Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  L
Sbjct: 419 RLFDTYGFPLDLTELICGENGYT-VDEKQFNEEMAQQKARARNAAV-----VENGDWEVL 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           +E  G  +F+GYD       +   RKV  +K                             
Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + + D  K+     +H  IV++     E
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNVE 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT
Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             EL+ +E  VN++I ++ P+        E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L +
Sbjct: 676 --SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS 802
               +  ++   +    EE   ++    K + Q               +  V+ +  ++ 
Sbjct: 734 MFN-NAKDLKAVLTRFVEENDAMKREVEKFRTQAVDRAAKTLAERVEMVDGVHVIKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSA 860
            VD    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +A
Sbjct: 793 -VDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKIIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           K++ GG GGG+PH AQ+GG + +    A+  V   +
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDADGVSAAVDKVMELI 886


>gi|329943212|ref|ZP_08291986.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|313848364|emb|CBY17368.1| putative alanyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325507370|gb|ADZ19008.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328814759|gb|EGF84749.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10]
 gi|328915050|gb|AEB55883.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 875

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/898 (36%), Positives = 498/898 (55%), Gaps = 49/898 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H ++ SS + P NDP+++FTN+GM  FK+IF  +E   Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  R+Y TV+++D+EAF LW     L +++I R+T  DNFWSMAETGPCG CSE+ FD+G
Sbjct: 120 DPDRIYATVHEKDDEAFALW--ERHLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ +++  
Sbjct: 178 EQFGKAASPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ + LI  +E+++G KY  +  +    RVI DH+RS SF IADG++P N  R
Sbjct: 238 TDTVFEADVLRLLISKTEELSGKKYHPDEALGAAFRVIADHVRSLSFAIADGLIPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RR++ Y + LG+T+P +  ++PAL   MG AYPEL  +   I+E +  E+E 
Sbjct: 298 GYVLRKILRRSVNYGKRLGFTKPFLAEIVPALVDAMGEAYPELRLSASQIQEVMTIEEEN 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           + K+L RG  LL  VL       I++G+ AFKL DT+GLPLD +  +      + +D+ +
Sbjct: 358 YFKSLHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIALLAKDYDFS-VDLDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q  +E + R+R + +     TT+ ++ SL     +T F+GY+ L    F         
Sbjct: 417 FYQLEKEAKERSRKN-IAKSHNTTDTVYDSLSLGENST-FVGYNDLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++AI++ GE V      +K  ++  +TPFYAE GGQ+GD+G     
Sbjct: 466 --------------IEAIIKDGEQVPYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCS 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       GI +HH  V +G L    ++   +    R+ +S NH+  HLLH AL
Sbjct: 512 DGTFVVSHTTSPKAGIVIHHGEVSQGQLCPAQAVTAQVHCLRRKNISNNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR  +  
Sbjct: 572 EMTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREASYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D + S       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++
Sbjct: 632 DVMNSKEIKQFFGDKYSDIVRVVSAG------FSHELCGGTHAEFTGDLGCFRILKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA+TG+ A        + L  +A  L+  +  ++ +++ I +E ++   + + 
Sbjct: 686 ATGIRRIEAVTGKEAEVLARQDTQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISD 745

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L    L      C ++ DV++  H + E +S  L+   + L +KI + ++ L    
Sbjct: 746 LENKLIYSLLDKVIDRCQQVEDVSYFIHHLPESESHRLQQYANCLHQKIPARLVSLWTTQ 805

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           K  K  +   +++DL+     A DL ++      GG  GG+   AQ      +   +A
Sbjct: 806 KNGKYIIFSRISDDLVKQGLQAKDLLKILLTPC-GGRWGGKDIFAQGS---ADSLPEA 859


>gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis]
 gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis]
          Length = 1025

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/962 (32%), Positives = 463/962 (48%), Gaps = 91/962 (9%)

Query: 4    VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
               +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 83   AKKVRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 142

Query: 59   QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LLTK +
Sbjct: 143  SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIGWAWELLTKIY 202

Query: 119  DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
             L   R+Y T +  DE        EA   W +   L  ++++     DNFW M +TGPCG
Sbjct: 203  KLPADRIYATYFGGDEKAGLAPDAEARDFWLQF--LPPERVLPFGCKDNFWEMGDTGPCG 260

Query: 171  PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
            PC+EI +D+           + +    IEIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 261  PCTEIHYDRV-GNRDASQLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 319

Query: 231  ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
            ER+ +VLQ K +NYD D+F  +  A +Q TG +               + +RV+ DH+R+
Sbjct: 320  ERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVDMAYRVVADHIRT 379

Query: 282  SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
             SF IADG  P NEGR YVLRRI+RRA+ Y   +L   E     L+  +   MG  +PEL
Sbjct: 380  LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNIVVKVMGDVFPEL 439

Query: 341  IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            IQ ++ I E ++ E+  FGKTL +G+         + + ++     AF L+DT+G PLD+
Sbjct: 440  IQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEV-QGKVSCLQDAFVLWDTYGFPLDL 498

Query: 401  MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             Q +   RGL  +D+  FN A++E R R+R        G                  I  
Sbjct: 499  TQLMAEERGL-WVDVEGFNNAMDEARERSRNAQNKQAGGD-----------------IIM 540

Query: 461  DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
            D    S   K+   V              S++KAI    E +    S  +V +V + T F
Sbjct: 541  DADATSALHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSNEVGIVLESTSF 600

Query: 521  YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--GILRTEMSLVLTIDYQ 578
            YAE GGQ+ DTG   G     Q+++VQ    G  VH   + R    L     ++  +DY 
Sbjct: 601  YAEQGGQIFDTGSLEGTFGSFQVSNVQI-FGGFVVHIGSLTRAAPRLSVGDKVICKVDYD 659

Query: 579  NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             R  ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+  A L+ IE  
Sbjct: 660  RRTLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPALLRKIESI 719

Query: 639  VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
            VN+ I   L V  +     +A   +G  A+ G  Y D VRVV++           E ++ 
Sbjct: 720  VNEQIKAELEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEW 779

Query: 687  GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH-----LMGQDE- 740
               S+ LCGGTH+S+T E     ++SE  I  G+RRI A+T   A        L+ Q+  
Sbjct: 780  SSISAELCGGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAMELASLLEQEAD 839

Query: 741  --------KLKSLASFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
                     L+   + LK              ++  ++  + +E RK Q   ++  +Q  
Sbjct: 840  EISKTEGSLLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQKKISEENMQKA 899

Query: 783  VE-DLSCHKIADVNF----MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            V+      ++A        +S +   +D+  ++  +  + +K     ++        K  
Sbjct: 900  VKIATEMAEVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMVFSIDETTNKVV 959

Query: 838  VLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            V   V E  D   +    +    + K L G  G G+  +A   G  G   D A+   A F
Sbjct: 960  VCAGVAEKGDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGVHLDAAMNLAAEF 1019

Query: 896  LK 897
             +
Sbjct: 1020 AQ 1021


>gi|183220780|ref|YP_001838776.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910880|ref|YP_001962435.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|205830131|sp|B0SGD3|SYA_LEPBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830132|sp|B0SPT4|SYA_LEPBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|167775556|gb|ABZ93857.1| Alanine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779202|gb|ABZ97500.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase; AlaRS) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 919

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/953 (34%), Positives = 493/953 (51%), Gaps = 96/953 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
              V  I   +  +FQ  GH ++PSSSLIP  DPTL+FT +GMV FK +FTG  +  Y  
Sbjct: 3   FKTVQEIARLYTNYFQDKGHTIVPSSSLIPKGDPTLLFTTAGMVQFKPLFTGAVELPYTR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             +VQKCVR      DL+ VG+T RH TFFEMLGNFSFG YFK+ AI+ A D      ++
Sbjct: 63  AASVQKCVRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKKEAIEYALDFSLNHLEI 118

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179
            + ++++T+Y +D+EA K W  + G+  ++I+R+   DNFW    ++G CGPCSE++ D+
Sbjct: 119 PKDKIWVTIYLDDDEAKKFWMDL-GIPEERIVRLGKKDNFWGPAGDSGACGPCSELYLDR 177

Query: 180 GECIPGGLPGSS------EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           G    G   G++       + +RY+E WNLVF QF Q    E   L +  IDTG GLER+
Sbjct: 178 GPEKGGPTCGNNPNCKPGCDCDRYLEYWNLVFNQFNQTVSGELLPLKQTGIDTGSGLERV 237

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQE  + YD D  K +I+  E ++G KY+     + RVI DH RS  F + DGI P 
Sbjct: 238 AMLLQEVDSVYDTDELKSIIKQIEILSGYKYDETTKQSFRVITDHSRSVFFSLGDGIYPD 297

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
             GRGYV+RR++RRA  +AR LG  EP +  L+  L       YPEL      IE  L+ 
Sbjct: 298 RTGRGYVIRRLIRRASLFARKLGIHEPFLYKLVSTLKDLYSLRYPELKDKAKDIESILKK 357

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+E F  TL+ GL  L+ VL HL K++  ++ G   F+LY T+G P ++ ++++  RG +
Sbjct: 358 EEELFLHTLEVGLEELETVLEHLKKEKQTVVTGKEGFRLYSTYGFPREMTKELVEERGFS 417

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
             D   F + LE+ R  +RA   G           S + K   T+F+GY   +       
Sbjct: 418 -FDDKGFEEELEKDRYLSRASWKGKKIQYLTGFSASPELK---TEFLGYTETK------- 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S V  +   G+ V     G++  +V D+TPFYAE GGQ+GDT
Sbjct: 467 ----------------AKSRVLHLFVDGKSVTSTKQGEEAVIVLDKTPFYAEGGGQIGDT 510

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G    +G + Q+ D QK+    F+H  ++ +G L     +   I+ + R+ L+ +HS TH
Sbjct: 511 GYLKKEGFQFQVQDTQKE-NDTFLHMGMILKGNLSVGDVVDSEIEVERRQNLANHHSGTH 569

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL+ AL  ILGSHV+Q GS ++ D LRFD +H K ++  E+  IE +VN+ ++ N+PV T
Sbjct: 570 LLNGALRRILGSHVTQKGSIVSADYLRFDFSHPKALSKEEIIQIETDVNEAVSANIPVKT 629

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++    A  SGA ++   KY   VRV+S+     G  S   CGGTHVS+T EI    IV
Sbjct: 630 EVLEIGQAKESGALSMFDEKYGSVVRVISM-----GDKSKEFCGGTHVSNTKEIGFFAIV 684

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKS--------------------------- 744
            E S  AG RRIEAI G+   ++ + Q + L S                           
Sbjct: 685 KEGSPGAGNRRIEAICGESVVNYFLHQFQTLASKIETHNLSAKETFGDLKEFGITKEVPS 744

Query: 745 ---LASFLKVSQGNVVGRVEE---------------IWEEYRKLQLIHAKRKLQLNVEDL 786
              L +        VV R+ +               +++  +K +    +   +L    L
Sbjct: 745 PEILQTMFHQDGKEVVTRLRKLREELEIELEEKSSALFKAKKKREQKEFQMNPELVDGLL 804

Query: 787 S-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              H       ++ +   VD+K LK + D+L+ K    I+ L G ++ + ++++ +  + 
Sbjct: 805 QKAHHFPKGKVVTEVFPSVDAKSLKDLADSLKAKEPE-ILCLFGTTEGESSTLVFMCNKV 863

Query: 846 LLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L +R  +  D+ + +  V+  G GGGRP MAQ GG       +++    S  K
Sbjct: 864 LNERGIHCGDILKET-LVMLDGKGGGRPDMAQGGGKKPESVAKSLEFALSLAK 915


>gi|83596048|gb|ABC25406.1| alanyl-tRNA synthetase [uncultured marine bacterium Ant39E11]
          Length = 868

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/915 (35%), Positives = 467/915 (51%), Gaps = 73/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  FL FF   GH ++ S+ L+  +D +LMF N+GM PFK+IFTG +   +  V
Sbjct: 1   MTASQIRQAFLNFFANKGHTIVHSAPLVTKDDSSLMFVNAGMNPFKDIFTGAKPASHSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT  + LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKQEAIDWAWELLTDVYQLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T+++         D+EA   W K   L AD+I+    +DNFW M ETGPCGPCS
Sbjct: 121 PERLYVTIFEGDKGDGLALDDEAKSHWLK--HLPADRILNGNKSDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    + +  + IE+WNLVFMQ+++        LP   +DTGMG
Sbjct: 179 EIHIDLRPEKERKQKDGATLVNMDHPQVIEVWNLVFMQYQRMADGSLVDLPSQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   ++ K++NYD D+F   IQ  E ++G  Y  +    V  RVI DH+R+  F IA
Sbjct: 239 FERLVRAIEGKSSNYDTDVFAPYIQRLESMSGRTYGKDESVDVAMRVIADHVRAVGFAIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RRA+ Y   +L + EP +  L+P +   MG A+PEL   + L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRAVRYGYSVLQFKEPFIARLVPDMVENMGKAFPELKAQQTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + +  E++ F +TL  GL  LD  +      + L G   F+LYDT+G PLD+   I  
Sbjct: 359 MTQVIEEEEQAFLRTLASGLKRLDAAMKE---GKPLMGKQCFELYDTYGFPLDLTALICK 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +G+  +D   F++A+ EQ+ R++              W  +    G  QF+GYD     
Sbjct: 416 EKGI-VLDEKGFHEAMAEQKGRSKVAGAQKVGD-----WVEVAPGIGD-QFVGYDQYTTE 468

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RKV   K                            G   +VV   TPFY E GG
Sbjct: 469 SKLLRYRKVSNAK----------------------------GDFTQVVIQPTPFYPEGGG 500

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q+GD G  I    R+++ +   +A  I    AI+     +   ++   ID   R+  + N
Sbjct: 501 QVGDRGWLIMGKDRIEVLNCSSEAGAILHLVAIM---PAKPTAAVKAVIDEGKRKASAQN 557

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSATHLLH AL  ILG HV Q GS ++ + LRFD +H + I + EL +IE +V+  I Q+
Sbjct: 558 HSATHLLHKALRDILGVHVEQRGSFVSDEYLRFDFSHFQRIAAKELMAIESHVSTAILQD 617

Query: 647 LPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            P+        E+A A GA AL G KY D VRV+ +        S  LCGGTHVS+T  +
Sbjct: 618 HPLQEFRESTMEEAKAKGAMALFGEKYGDSVRVIQLG------DSVELCGGTHVSTTAAL 671

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSESS+ AGIRRIEA+ G  A  +L    +  +++    K    + +  +E + +
Sbjct: 672 SPFVIVSESSVAAGIRRIEALAGHSAAIYLKQAQQSQQAILEVTKGQ--DPLEAMESMKK 729

Query: 766 EY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           E     + L+   + +   L  E L   K      M     ++D+   K +  AL K+  
Sbjct: 730 ELSAMQKALKSYQSAQAGDLKTELLQSAKAIGPYNMMAAAVDLDAASAKDLAFALVKQDP 789

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
             +++L  +S + KA   + V +  LD  +A    +     +  G GGG+   A +GG +
Sbjct: 790 KSVVLLA-LSNDGKAQAHMAVGKQALDVAHAGQWVKALGHYI-QGSGGGQDFYASAGGKS 847

Query: 882 GNKADQAIAGVASFL 896
            +     +      L
Sbjct: 848 PSGIPDLLQAFEEKL 862


>gi|326336584|ref|ZP_08202753.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691249|gb|EGD33219.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 877

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/921 (35%), Positives = 485/921 (52%), Gaps = 76/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP  + V
Sbjct: 1   MTSQEIRQQFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEYFLGNAKPKQKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  VDTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEVYRIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++         D+EA+ +WK+   ++ D I+     DNFW M + GPCGPCS
Sbjct: 121 KENLYVTVFEGSPEEGVPLDQEAYDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSEEEKAEIPGRDLVNRDHPQVIEIWNNVFMEFNRKADGSLEKLPAHNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLR 280
            ER+  VLQ+K +NYD D+F  LI   E++T  KY     V           RV+ DH+R
Sbjct: 239 FERLCMVLQKKQSNYDTDVFTPLIHKVEEITKSKYSNGTNVTPEQEEINVAIRVVSDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MGS +PE
Sbjct: 299 AVAFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLSKQMGSTFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +   D+ L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQN-NPDKQLSGSKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +G+  +D   F + L++Q+ R+RA +           W  L++     +FIG
Sbjct: 418 LTALILSEKGMT-LDERGFEENLQKQKERSRAAAQ-----VKADDWVILRDD-EEEEFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L+    + + RK                           VE    G   ++VF+ TP
Sbjct: 471 YDTLKAIVRLVKYRK---------------------------VESQKDGTLYQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H A  E             +   +
Sbjct: 504 FYPEGGGQVGDKGTLQAANGELIYILDTKKENNLIIHIA--EHLPENLNDPFQAEVASLS 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +T  EL+ +E  V
Sbjct: 562 RTLAEANHSATHLLHQALREVLGTHVEQKGSHVAPESLRFDFSHFAKLTQEELRKVERLV 621

Query: 640 NDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+     +    AI SGA AL G KY D VR++          S  LCGGTH
Sbjct: 622 NKRIFEKIPLEEHRNIPIRQAIESGAMALFGEKYGDHVRMIQFG------ESKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  +   Q+  L+ + + LK  Q  +  
Sbjct: 676 VKNTGDIWFFKIISEGAVAAGIRRIEAITSAGALKYFADQEALLEGIKASLKNPQEPI-K 734

Query: 759 RVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMD 814
            +  + EE  +L  ++   KR+    +++    +   +N +  +  +  +D   LK +  
Sbjct: 735 SIINLQEENAQLHKEIEQLKREQAKQLKEGLKKEFIPINGIQCLTKQLNLDLATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRP 872
            L ++++   I+   + +  KA +L  + ++L      +A  + R   K + GGGG G+P
Sbjct: 795 MLGEEVKDAFILFGTVQEGGKAMLLCYINKELTKSKSLDAGKIVRELGKYIHGGGG-GQP 853

Query: 873 HMAQSGGPNGNKADQAIAGVA 893
             A +GG       +A+  V 
Sbjct: 854 FFATAGGKKPEGIIEALEKVK 874


>gi|307564458|ref|ZP_07626999.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346818|gb|EFN92114.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 884

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/934 (34%), Positives = 487/934 (52%), Gaps = 88/934 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++ +FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKSPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L 
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLS 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           ++ +Y+TV++         D+EA K W K   L  D II    +DNFW M +TGPCGPC+
Sbjct: 121 EKDIYVTVFEGSKDENIPRDDEAAKYWSK--HLPKDHIINGNKHDNFWEMGDTGPCGPCT 178

Query: 174 EIFFDQGECIPG----GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           G    +++  + IEIWN+VFMQF +++      L    IDTGMG
Sbjct: 179 EIHIDSRPLDERNGVLGRDLVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHRV 274
            ER+  +LQ K +NYD D+F+ +I+  E ++  KY               +    V  RV
Sbjct: 239 FERLVRMLQGKHSNYDTDIFQPIIKRIEALSNYKYGFTSPTGKDGECLTEQEKIDVAMRV 298

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM 333
           I DHLR+ +F IADG LP+N   GYV+RRI+RR + YA   L   E  M  LLP L +EM
Sbjct: 299 IADHLRAVAFSIADGQLPSNAKAGYVIRRILRRGVRYAYTFLNQREAFMYKLLPTLVSEM 358

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLY 391
           G+AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+L+
Sbjct: 359 GAAYPELSAQEELIGRVIKEEEDSFLRTLEKGITLLNGAMDELKAHGQSCLDGKEAFRLF 418

Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
           DT+G PLD+ + I    G   +D   F+  + +Q++RAR  ++     T    W  +++ 
Sbjct: 419 DTYGFPLDLTELICRENGYT-VDEKQFDMEMSQQKARARNAAV-----TENGDWMIVRQ- 471

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G   F+GYD       +   RKV  +K                                
Sbjct: 472 -GEQTFVGYDYTEYECRILRYRKVTQKKHSF----------------------------Y 502

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EVV D TPFY E GGQ+GD G  + +   + + D  K+     +H  I+E      E S 
Sbjct: 503 EVVLDNTPFYGEMGGQVGDQGVLVSEQETVNVLDT-KRENNQSIH--IIEELPKNVEASF 559

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  +D   R   + NH+ATHLL +AL  +LG H  Q GS ++P  LRFDV+H + IT  E
Sbjct: 560 MACVDTDKREASAANHTATHLLDYALKEVLGEHAEQKGSYVSPTTLRFDVSHFQKITDEE 619

Query: 632 LKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           L+ +E  VN  I  +           E+A   GA AL G KY D+VRVV          S
Sbjct: 620 LRKVERIVNGFIRADYSCDEHRDTPIEEAKKMGAVALFGEKYGDKVRVVRFGP------S 673

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGG H  STG I    IV ESS+ AG+RRIEA+TG  +   +  Q++ L+ L   L 
Sbjct: 674 CEFCGGIHAKSTGSIGFFKIVGESSVAAGVRRIEALTGANSEEAIYTQEDTLRDLKQMLN 733

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD 805
            +  ++   +++  EE+  ++      + Q              ++  V+ +  ++ EVD
Sbjct: 734 -NPKDLKVALKKYIEEHEAMKKDMESLRKQGVARHAKTLIESAKEVDGVHIVKAVL-EVD 791

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVL 863
           S   K ++  +++   S +I ++G     +  + +++++D++   + NA  + R +A+++
Sbjct: 792 SSSAKDIVFKVREAFDSKLICVLGSVSGNRPQISVMLSDDMVKEGKKNAGKVIREAAQLI 851

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GG GGG+ H AQ+GG + +  D A+      LK
Sbjct: 852 KGG-GGGQAHYAQAGGKDASNIDAAVDKAVELLK 884


>gi|116331894|ref|YP_801612.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280371|sp|Q04QG6|SYA_LEPBJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116125583|gb|ABJ76854.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 940

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/971 (32%), Positives = 473/971 (48%), Gaps = 117/971 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   T
Sbjct: 5   SVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI  A D        D+
Sbjct: 65  SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHLGFDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGE 181
            ++++TVY +D+EA K+W    G+  ++I R+   DNFW    ++G CGPCSE++ D+G 
Sbjct: 121 EKIWVTVYTDDDEAEKIWITK-GIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRGV 179

Query: 182 CIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A 
Sbjct: 180 EKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-------------------NNIVNHRVIV 276
           +LQ   + YD +  + +I   E+++G+KY+                    N     RV+ 
Sbjct: 240 LLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAFRVVT 299

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+  +       
Sbjct: 300 DHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEIYKPR 359

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTH 394
           YPEL +    I++T+ +E+E F KTL+ GL  ++ +++        I +G  AF LY T+
Sbjct: 360 YPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKTIFSGADAFLLYGTY 419

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P ++ ++I+  +GL   D   F + LE+ R  +R            K+     +    
Sbjct: 420 GFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQLSRESWKA------NKVSLMTGQSVEK 472

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           T+F+GY  L G                          +  +  + +       GQ   +V
Sbjct: 473 TEFLGYSSLSG-----------------------KGNIIHLFNENKPAGALKEGQAGAIV 509

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            ++TPFY E GGQ+GDTG         ++ D QK+   + +H   V  G       L   
Sbjct: 510 LNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDTQKE-NDVILHFGEVLSGEFSIAQELEAE 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++   R +L  +HS THLL+ AL  +LG HV Q GS ++P+ LRFD +H   +TS E++ 
Sbjct: 569 VEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSKEIRK 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ I +N PVVT+ +  EDA   GA A  G KY DRVRVV +     G  S   C
Sbjct: 629 IESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDASVEFC 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-- 752
           GGTHVS TGEI   +I  ESS  AG RRIE + G         +  +L      L +   
Sbjct: 684 GGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLNLKIK 743

Query: 753 ------------------QGNVVGRVEE-----------IWEEYRKL--QLIHAKRKLQL 781
                                +  ++E+           + EE      +   A  K++ 
Sbjct: 744 SELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFLKMKK 803

Query: 782 NVEDLSCHKIADV--------------NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++E       A V                +S I  + D   LK + D L+ + ++ +++L
Sbjct: 804 SLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVREKNLLVIL 863

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + +  + V+   ++ +    +  DL R   ++L GG GGG+P MAQ GG      + 
Sbjct: 864 GSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQNLES 922

Query: 888 AIAGVASFLKK 898
           AI+      K+
Sbjct: 923 AISFAIQLAKQ 933


>gi|298372626|ref|ZP_06982616.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275530|gb|EFI17081.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 867

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/921 (36%), Positives = 494/921 (53%), Gaps = 87/921 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N    R  FL+FF+   H+++PS+ ++  +DPTLMFTN+GM  FKNI  G +   Y  V
Sbjct: 1   MNSKETRKAFLDFFRGKQHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ LT+   LD
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEFLTEVIKLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EA  +W++   L  ++II     DNFW M + GPCGPCS
Sbjct: 121 KDRLYVTVFEGSKEDGLSRDDEAAAMWEQF--LPKERIIDGNKKDNFWEMGDVGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D           GL   +    + IEIWNLVFMQ++++       LP   IDTGMG
Sbjct: 179 EIHIDIRPQAERDAVDGLTLVNGSHPQVIEIWNLVFMQYDRKADGSLTSLPNKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   LQ K++NYD D+F+ +IQ   +++GM Y  +    V  RVI DH+R+ +F IA
Sbjct: 239 FERLCMALQGKSSNYDTDIFQPIIQEIAKISGMSYRQDAKTDVAMRVIADHIRTIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG  E  M  L+P LC+ MG  + E+I  + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQREAFMYRLVPILCSVMGDNFTEIISQRDL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE+ ++ E+E F +TL+ G+ LL+  +    K  +L+G+VAF LYDT+G PLD+ + IL 
Sbjct: 359 IEKVIKEEEEAFLRTLETGIRLLEKNMPTA-KGGVLSGEVAFTLYDTYGFPLDLTELILR 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             G+  +D+  F+  +++Q+ RAR       +      W  + +  G + F+GYD     
Sbjct: 418 ENGMT-VDVAEFDSEMKKQKERARNA-----ATVETDDWVVVSD--GDSLFVGYDQYCTE 469

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RKV  +                              +  ++V  QTPFYAE GG
Sbjct: 470 TKIIRYRKVKQKNK----------------------------EYYQLVLSQTPFYAEKGG 501

Query: 527 QLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           Q+GD G   G  DG  ++I D  K    + VH A  ++       +    I+ ++R   +
Sbjct: 502 QVGDRGKLTGSEDGSLVEIFDT-KTENNLHVHLA--DKLPSNVAQTFTAEINTESRLATA 558

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATH+LH AL  +LG HV Q GS +  D LRFD +H + +T  E++ +E   N  I 
Sbjct: 559 RNHTATHILHEALREVLGKHVEQKGSYVCADNLRFDFSHFQKMTDDEIRRVETIANRRIR 618

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            N P+     +   +A A GA AL G KY + VRVV          S  LCGGTHVS TG
Sbjct: 619 DNYPLEEMRQLPIAEARAMGAIALFGEKYGETVRVVKFGS------SVELCGGTHVSRTG 672

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ IV+ESS+ AG+RRIEAITG+     +   +  + S       +  +++  ++  
Sbjct: 673 DIGMVKIVAESSVAAGVRRIEAITGEAVEKLIYMHEYVISSAKELFNNTP-DLLKAIQHA 731

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFM--SHIISEVDSKELKSVMDALQK 818
            +E ++LQ       + K+    ++L   +   VN +   H+ + +    +K++M  L+ 
Sbjct: 732 VKENKELQKRVEDFSREKIASMCQEL-LKEARTVNGIRQIHLKTTLPPDMIKTLMFQLRN 790

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVL------GGGGGGGR 871
                +  ++G   + K S+ ++V++DL+ + FNAV + R +AK +              
Sbjct: 791 TSNDNLFAVIGSVHDNKPSLTVLVSDDLVAKGFNAVQIVRQAAKHIQGGGGGQ------- 843

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           P  AQ+GG N N  D AIA  
Sbjct: 844 PFFAQAGGKNPNGLDDAIAEA 864


>gi|205830104|sp|A8LCW4|SYA_FRASN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 880

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/913 (35%), Positives = 482/913 (52%), Gaps = 56/913 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F + GH ++PS+SL+   DPTL+  N+GMVPFK  F G  K  +   
Sbjct: 1   MDTAEIRRRFLNHFSERGHTVVPSASLVAQ-DPTLLLVNAGMVPFKPYFLGDLKAPWNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T+VQKCVR      D+DNVGRT RH +FF+M GNFSFG YFK  AI  A++L+   +  +
Sbjct: 60  TSVQKCVRTV----DIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFN 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
              L+ TVY +D+EA  +W+ +  L A++I R    DNFWSM   GPCGPCSEI+FD+G 
Sbjct: 116 PDDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGP 173

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLERMATV 236
              G   G   + +RY+EIWNLVFMQF +    E        LP  +IDTGMGLERMAT+
Sbjct: 174 AY-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ   N Y+ID+ + ++ A+ ++TG +Y  + ++ V  RV+ DH R+++ LI+DG+ P+N
Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSN 292

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA+  ARLLG  EP+M  L   +   MG  YPEL+     I     +E
Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAE 352

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +  F +TL  G  L D  ++         L+G+ AF+L+DT+G P+D+  D+    GL  
Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT- 411

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           +D   F + +E QR  A+A       G  +   +  +    G T F GY  L        
Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGYTEL-------- 463

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQ--QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
                          G  S +  IV    G+ +  A  G++V ++ D TPFYAE+GGQ  
Sbjct: 464 ---------------GRESGIVGIVGIGDGDSLTAAGEGEEVGILLDATPFYAESGGQEA 508

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           D G    DG   ++ DVQ+    + +H   V  G LR    +   +D + RR +S +H+A
Sbjct: 509 DLGRIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTA 568

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H A    LG   +Q GS  +P  LRFD      +  + L  +ED VN+I  ++L V
Sbjct: 569 THLVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEV 628

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              + ++E+A   GA AL G KY DRVRVV     D G ++  LCGGTHV+S+ ++  + 
Sbjct: 629 RWYVTSQEEARRLGAMALFGEKYGDRVRVV-----DVGDYARELCGGTHVASSAQLGAIK 683

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++SESSI AG RR+EA+ G  A   L  +   +  L+S LK     +  RV +I    R 
Sbjct: 684 LLSESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADIVGRLRD 743

Query: 770 LQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSG 823
            +    + + Q               +  V  ++  + +   + +++ +   ++ ++   
Sbjct: 744 AEKELERLRAQAVLAGSAALAAGAEDVGGVALVTAQVPAGTPADDVRLLALDVRGRLAGR 803

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
             ++  +     A V+            A DL R S   LGG GG G+P +AQ G  + +
Sbjct: 804 PAVVAVVEAAGAAVVVATDETARTRGLRAGDLVRHSWAALGGKGG-GKPDVAQGGRGDAD 862

Query: 884 KADQAIAGVASFL 896
              +  A +   +
Sbjct: 863 MIPKVFARLRELV 875


>gi|91084029|ref|XP_966465.1| PREDICTED: similar to alanyl-tRNA synthetase [Tribolium castaneum]
 gi|270006700|gb|EFA03148.1| hypothetical protein TcasGA2_TC013061 [Tribolium castaneum]
          Length = 965

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/971 (31%), Positives = 483/971 (49%), Gaps = 88/971 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
            +   +R  ++ FF++  H+ + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 5   MSAKDVRNAYINFFKEKNHDYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTVDPNSDLA 64

Query: 60  ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LTK
Sbjct: 65  KLTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTK 124

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +        + D E  ++W  + G+    ++  +  DNFW M ETGP
Sbjct: 125 RLHLPGDRLYVTYFGGDKAAGLEPDNECKQIWLGL-GVPESHVLPGSMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ FD+           +++    +EIWNLVF+Q+ +++      LPK  ID G+
Sbjct: 184 CGPCSELHFDRIGG-RDVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKFLPKKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +++Q K +NYD DLF  L  A ++ TG    G            + +RV+ DH 
Sbjct: 243 GLERLVSIMQNKRSNYDTDLFLPLFDAIQKGTGAPPYGGKIGDADKDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTITIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFSTLVNTVVEILGDTFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I +T+  E+E+F KTL RG  LL+  ++ LG  + L GDVA++LYDT+G P+
Sbjct: 363 EVCKDPQSIIDTINEEEEQFLKTLSRGRNLLNRTITKLGDSKTLPGDVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  +D+  +    EE +  A+  S G GSG  + I   +   +  T+  
Sbjct: 423 DLTQLMAEEKGL-NVDMAVY----EESKKLAQIASQGKGSGVEDTINLDV---HAITELQ 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
              +       K +                 S V A+    + VE+  +GQ+  ++ D+T
Sbjct: 475 NLGVPPTDDAPKYNYIAGSGINEEYKFELCHSTVIALRHNKQFVEQVHTGQECGILLDKT 534

Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            FYAE GGQ+ DTG  +    + +   + +VQ +  G  +H   +E G L+    + L +
Sbjct: 535 NFYAEQGGQIYDTGYIVKIGDESVEFSVKNVQVR-GGYVIHIGSLE-GTLKKGDKVALHV 592

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ TH+L++AL  +LG+   Q GS + PD LRFD T+   +T  ++K+ 
Sbjct: 593 DSARRRLIMNNHTGTHVLNYALRKVLGTEADQRGSLVAPDRLRFDFTNKGAMTVDQVKNT 652

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E N  ++I++N  V  +  N   A    G  A+    Y D VR+VS+             
Sbjct: 653 ELNSKELISRNDQVFAKESNLAVAKTIRGLRAVFEETYPDPVRIVSIGIPVEKLEVDPFG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDE 740
             G   S   CGGTH+  +G I    I SE +I  GIRRI A+TG  A   L      + 
Sbjct: 713 PAGDNTSIEFCGGTHLKYSGHIGDFVIASEEAIAKGIRRIVALTGPEATKALKRTEYLEN 772

Query: 741 KLKSLASFLKV-----SQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVED-L 786
            L  +   ++          +V ++ ++ EE        ++K ++ +A + L+ N++D  
Sbjct: 773 CLNDIKFLVETDKNGEKSKELVKKIVQLTEEVSHAVIPYWKKEEIRNALKTLKKNLDDKE 832

Query: 787 SCHKIADVNFMSHIISEV------------------DSKELKSVMDALQKKIQSGIIMLV 828
              K A  N +   I E                   ++K L + +  ++    S   + V
Sbjct: 833 RAAKAAVANQVVDQIKEFVKANPNLPILVKELKAFSNTKALDTALKQVRSLSPSTSALFV 892

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  +  K   L  V+++ +D+   A +  +  A  LGG GG G+   AQ+ G N    +
Sbjct: 893 TVDPDSNKMFCLASVSKEGVDKGLKANEWVQAVASKLGGKGG-GKADSAQASGSNSVAVE 951

Query: 887 QAIAGVASFLK 897
           + +     F +
Sbjct: 952 EILQLAKQFAE 962


>gi|296270020|ref|YP_003652652.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092807|gb|ADG88759.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 889

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/921 (34%), Positives = 493/921 (53%), Gaps = 63/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL FF++NGH ++PS+SL+   DPTL+  N+GMVPFK  F GQ+KP ++  
Sbjct: 1   MESAEIARRFLRFFEENGHTVVPSASLVA-EDPTLLLVNAGMVPFKPYFLGQQKPPFRRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH +FF+MLGNFSFG YFKE AI  AW+LLT+     
Sbjct: 60  TSLQKCVRT----LDIDEVGKTPRHASFFQMLGNFSFGDYFKEGAIPFAWELLTRPVSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + RL++TVY +D+EA ++W+K+ G+ A++I R    DN+W M   GP GPCSEI+
Sbjct: 116 GFGFPEDRLWVTVYLDDDEAQEIWRKV-GVPAERIQRRGLADNYWHMGVPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+E+WNLVFMQ +    + +        LP  +IDTGMGL
Sbjct: 175 YDRGPQY-GREGGPIADENRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMA +LQ   N Y+ID    +I+ + ++T  +Y  +    +  RV+ DH+R+   L+ D
Sbjct: 234 ERMAAILQGVDNIYEIDTTSKIIKRAAELTETRYGRDERSDICLRVVADHMRAGVMLVGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGY-TEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G+LP+NEGRGYVLRR++RR +   RLLG   E  M  L       M   YPEL   +  I
Sbjct: 294 GVLPSNEGRGYVLRRMLRRTIRNLRLLGAGEERYMRELTATTIEAMSGLYPELKTEEARI 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
              + +E+  F  TL  G  + D  ++   +    +L+G+ AF+L+DT+G P+D+  ++ 
Sbjct: 354 HTVIEAEEASFLGTLRTGTAIFDAAVAETKRKGGTVLSGEQAFQLHDTYGFPIDLTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL  +D   F + ++EQR RA+A +    +G  +  ++  + EK G   F+GYD   
Sbjct: 414 AEQGLK-VDEEGFRRLMQEQRERAKADAKAKKTGHADISVFSGILEKAGKIDFVGYDRT- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  ++  G  V  A  G  +E+V D+TPFYAE 
Sbjct: 472 ----------------------TAEATVVGLIVNGVSVPAAGEGTSLEIVLDRTPFYAEG 509

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQL D G     G  +++ DVQ   +G+ VH   V  G +         ID + RR +S
Sbjct: 510 GGQLADQGVIRTSGAEIEVLDVQSPIDGLIVHRGKVRSGEVLVGDQAHAEIDVERRRAIS 569

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H+ATH++H      LG   +Q GS  +P   RFD T +  +  + L+ +ED VN ++ 
Sbjct: 570 RSHTATHMVHRGFRNALGESAAQAGSENSPGRFRFDFTSAGAVPPSVLRDVEDEVNAVLI 629

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +LPV     ++ +A A GA AL G KY D VRVV V     G +S  LCGGTHV+++G+
Sbjct: 630 NDLPVRAFYTSQAEARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVATSGQ 684

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ I+ ESS+ AG+RR+EA+ G  A   L  +   +  L+  LK  +  +  R+E I 
Sbjct: 685 LGLIKILGESSVGAGVRRVEALVGLDAFRFLAKESVLVSQLSEQLKARREELPERIEGIV 744

Query: 765 EEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
              R  +    + +    +            +  V+ ++H       + +L+ +   ++ 
Sbjct: 745 SRLRAAEKELERLRSAQVLAVAGELAAGARDVHGVSLVTHRAPDGTTADDLRKLALDVRG 804

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +  +    +V ++       ++VV  +   R     A  L  ++AK LGGGGG GR  +A
Sbjct: 805 RFPADRAAVVVVAGVPANRPVVVVAANEAARERGVKAGQLVGVAAKALGGGGG-GRDDVA 863

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG      + A+  V + +
Sbjct: 864 QGGGSRPEAIEDALRAVEAAV 884


>gi|296231556|ref|XP_002761188.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic [Callithrix jacchus]
          Length = 968

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/969 (33%), Positives = 479/969 (49%), Gaps = 88/969 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F+EFF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIEFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLEDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKILSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-LVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +           +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 476 QGLEVTDDSPKYNYH--SDSSGNYVFENTVATVLALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE GGQ+ D G  +     +  + + T    +  G +V H     G L+    + L I
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSNEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVRLFI 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 594 DEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 652

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV-----------SVEY 683
           E+  N++I    PV T+      A A  G  A+    Y D VRVV               
Sbjct: 653 EEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSVGVPVSELLDDPSG 712

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +    
Sbjct: 713 PAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKT 772

Query: 744 SLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL+   + +K       +V   + ++ E        +++K +L    + L+  ++DL   
Sbjct: 773 SLSLMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDELRETLKSLKKVMDDLDRA 832

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 833 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 893 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVGCLQEA 951

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 952 LQLATSFAQ 960


>gi|116327492|ref|YP_797212.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122284708|sp|Q054G6|SYA_LEPBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116120236|gb|ABJ78279.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 940

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/971 (32%), Positives = 474/971 (48%), Gaps = 117/971 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +VS IR  FL +F+   H ++PSSSL+P  DPTL+FT +GMV FK +FTG  +  Y   T
Sbjct: 5   SVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R      DL+ VG+T RH TFFEMLGNFSFG YFKE AI  A D        D+
Sbjct: 65  SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHLGFDK 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGE 181
            ++++TVY +D+EA K+W    G+  ++I+R+   DNFW    ++G CGPCSE++ D+G 
Sbjct: 121 EKIWVTVYTDDDEAEKIWITK-GIPKERIMRLGKKDNFWGPAGDSGACGPCSELYLDRGV 179

Query: 182 CIPG------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
              G      G      + +R++E WN+VF QF Q  +     L +  IDTG GLER+A 
Sbjct: 180 EKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-------------------NNIVNHRVIV 276
           +LQ   + YD +  + +I   E+++G+KY+                    N     RV+ 
Sbjct: 240 LLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAFRVVT 299

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+RS  F I DGI P   GRGYV+RR++RRA  + R L + EP +  L+  +       
Sbjct: 300 DHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEIYKPR 359

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTH 394
           YPEL +    I++T+ +E+E F KTL+ GL  ++ +++        I +G  AF LY T+
Sbjct: 360 YPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKTIFSGADAFLLYGTY 419

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P ++ ++I+  +GL   D   F + LE+ R  +R            K+     +    
Sbjct: 420 GFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKA------NKVSLMTGQSVEK 472

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           T+F+GY  L G                          +  +  + +       GQ   +V
Sbjct: 473 TEFLGYSSLSG-----------------------KGNIIHLFNENKPAGALKEGQAGAIV 509

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            ++TPFY E GGQ+GDTG         ++ D QK+   + +H   V  G       L   
Sbjct: 510 LNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDTQKE-NDVILHFGEVLSGEFSIAQELEAE 568

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++   R +L  +HS THLL+ AL  +LG HV Q GS ++P+ LRFD +H   +TS E++ 
Sbjct: 569 VEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSKEIRK 628

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ I +N PVVT+ +  EDA   GA A  G KY DRVRVV +     G  S   C
Sbjct: 629 IESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDASVEFC 683

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-- 752
           GGTHVS TGEI   +I  ESS  AG RRIE + G         +  +L      L +   
Sbjct: 684 GGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLNLKIK 743

Query: 753 ------------------QGNVVGRVEE-----------IWEEYRKL--QLIHAKRKLQL 781
                                +  ++E+           + EE      +   A  K++ 
Sbjct: 744 SELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFLKMKK 803

Query: 782 NVEDLSCHKIADV--------------NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
           ++E       A V                +S I  + D   LK + D L+ + ++ +++L
Sbjct: 804 SLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVREKNLLVIL 863

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
              + +  + V+   ++ +    +  DL R   ++L GG GGG+P MAQ GG      + 
Sbjct: 864 GSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQNLES 922

Query: 888 AIAGVASFLKK 898
           AI+      K+
Sbjct: 923 AISFAIQLAKQ 933


>gi|150025983|ref|YP_001296809.1| alanyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|205830094|sp|A6H0Y3|SYA_FLAPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|149772524|emb|CAL44007.1| Alanine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 887

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/938 (34%), Positives = 485/938 (51%), Gaps = 93/938 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF+  GH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    +
Sbjct: 1   MTSKEIRQQYLKFFESKGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGTPKSPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL++VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           ++ LY++V++         D+EA+ +WK +  +  D+II     DNFW M + GPCGPCS
Sbjct: 121 KQNLYVSVFEGSKEDNVPFDQEAWDIWKGL--IDEDRIILGNKKDNFWEMGDQGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    + +  + +EIWN VFM+F ++       LP   +DTGMG
Sbjct: 179 EIHVDLRTPEEKAQVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDH 278
            ER+   LQ KT+NYD D+F  LI+   Q+TG KY  N +           +  RVIVDH
Sbjct: 239 FERLCMALQGKTSNYDTDVFTPLIEKVTQITGYKYTSNEVKNISEEQNKTNIAIRVIVDH 298

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L ++MG  +
Sbjct: 299 VRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFITKLVAVLASQMGEFF 358

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+   + L+   +R E+  F +TL++GL LLD V++     E+ +G  AF+LYDT G P
Sbjct: 359 PEIKSQQQLVTNVIREEEASFLRTLEQGLQLLDKVVAETKGKEV-SGAKAFELYDTFGFP 417

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   IL  +G   +D   FN A++EQ++R+RA S       +  I  +++       F
Sbjct: 418 IDLTALILREKGYE-LDEAGFNAAMQEQKNRSRAASEVFTEDWSVLIPGNIE------TF 470

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GYD       +   RK                           V     G   ++V D 
Sbjct: 471 VGYDKTENDVKITRIRK---------------------------VNSKKDGILYQIVLDN 503

Query: 518 TPFYAEAGGQLGDTGCAIGDG---------IRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           TPFY E GGQ+GD G  +              + I D +K+   + +H A      + T 
Sbjct: 504 TPFYPEGGGQVGDKGTLVSANDSSDSEQAKQTIDIIDTKKE-NNLILHFAKQLPENIETG 562

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              V  ++   R   S NHSATHL+H AL +ILG+HV Q GS + PD LRFD +H   ++
Sbjct: 563 --FVAKVNTNLRASTSKNHSATHLMHLALRSILGTHVEQKGSLVNPDYLRFDFSHFSKVS 620

Query: 629 SAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +L+ +E +VN  I   L +     +  ++A+  GA AL G KY D VR++        
Sbjct: 621 DDQLRQVEASVNAQIEAQLQLTEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFG----- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S  LCGG HV +T +I    I+SE ++ AGIRRIEAITG   ++    Q+  L  +  
Sbjct: 676 -ESKELCGGIHVKNTAQIWHFKILSEGAVAAGIRRIEAITGDAVKAFYTNQENTLSEIKE 734

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHII 801
            LK    +++  V  + ++  KL+    +  L+  +E L         +I  +NF+S  +
Sbjct: 735 VLK-KPQDILKSVTSLQDDNVKLKKQIEQL-LKEKIEGLKNTLVSEFQEINGINFLSKQV 792

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLS 859
            ++     K ++ AL     +  ++L  I +E   ++   + ++L+     NA  + +  
Sbjct: 793 -DLSMSSTKDLLQALGSLKPNSFVVLASI-EENMPNIHCYIAKELVAGKGLNANVVIKEL 850

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            K +  G GGG+P  A   G N +   +A+     F+K
Sbjct: 851 GKYIE-GNGGGQPFFASGKGKNVSGIKEALQKAIEFVK 887


>gi|295396122|ref|ZP_06806305.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971063|gb|EFG46955.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 884

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/916 (35%), Positives = 488/916 (53%), Gaps = 56/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +LEFF+  GH ++PS+S+I   DP+++F  +GMV F    TG+E   +   
Sbjct: 1   MKTAEIKRRWLEFFESKGHTVVPSASVISS-DPSILFNIAGMVQFIPYLTGREPAPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFK  AI +AW+LLT      
Sbjct: 60  TSVQKCVRTA----DIEEVGQTTRHGTFFQMNGNFSFGDYFKREAISMAWELLTTLEDKG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   L++TV+ +D  +  LW + + +  ++I      DNFW   + GP G CSEI+
Sbjct: 116 GLGFDPNLLWVTVHQDDAASIDLWLEETSMPRERIQMRGNEDNFWHTGQPGPGGYCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFM+FE    + +        LP  +IDTGMGL
Sbjct: 176 FDRGPAY-GKEGGPVADEDRYIEIWNLVFMEFELSEVRTKVDFDIKGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID    +I+ +E+++G  Y  N  + V  RV+ DH+RS+  +I D
Sbjct: 235 ERVAFLKQGVENMYEIDEVYPVIKKAEELSGRAYGTNHDDDVRMRVVADHVRSALVIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RR++   RLLG T+P++ HLLP     M  +YPEL      I 
Sbjct: 295 GVRPGNEGRGYILRRLLRRSIRAMRLLGVTQPVLPHLLPVSKDAMKQSYPELDTDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +   +E+  F +TL+ G  LL   ++ +GK   ++G VAF L+DTHG P+D+  ++    
Sbjct: 355 KIAYAEETAFLRTLESGTQLLTRTVAEVGKGGTIDGAVAFTLHDTHGFPIDLTVEMAHEA 414

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G+  +D+  F   +EEQR RA+A +     G      +S   + G ++F+GYD L     
Sbjct: 415 GVE-VDVDGFKAHMEEQRQRAKADAKSKKGGGANLTAYSHLLEAGTSEFVGYDNLNTL-- 471

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + V+ I++ GE V  A +G  V+VV D TPFYAE+GGQ 
Sbjct: 472 ---------------------ATVRGIIKDGEAVPVAHAGDTVDVVLDITPFYAESGGQT 510

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G   G  ++ ++TDVQ    G+  H   VE G L T   +   +D  +R Q    HS
Sbjct: 511 ADIGHLTGPDLKARVTDVQNILAGLPTHKVTVETGELETGALITAQVDPDHRYQAQQAHS 570

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHL+H AL  +LGS+ +Q GS   P  LRFD ++ + ++ A  + IE+  N  +  N  
Sbjct: 571 ATHLIHAALREVLGSNATQAGSLNNPGYLRFDYSYPEALSPAARQEIEECANTAVRDNFE 630

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    +  E+A  SGA AL G +Y + VRVV +     G  S  LCGGTHV+ T EI  +
Sbjct: 631 VGYDFLPFEEAKKSGAMALFGERYPEIVRVVDI----NGTWSRELCGGTHVTRTAEIGPI 686

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            + SE+S+ +G RRIEA  G  A   L  +   +  L+  LKV    V  RV  + +  +
Sbjct: 687 SLTSEASVGSGTRRIEASVGLDAMKQLARERSTVAQLSELLKVPGPEVYERVTGLMDRIK 746

Query: 769 KLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQS 822
           + +     L   K   +      S  K+     ++  + +V ++ +++S +  ++ ++  
Sbjct: 747 EAERTIAHLNQEKVLARATDAAASAQKLGPATVVTTELGDVANAADVRSFVLDVRNRLND 806

Query: 823 GIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              ++  +     K +V+I V  +       A  L   + K LGGGGG G+P +AQ GG 
Sbjct: 807 PAHVIAAVGLANGKPAVVIAVGPEAQKAGLKAGALVTSACKTLGGGGG-GKPDLAQGGGQ 865

Query: 881 NGNKADQAIAGVASFL 896
           +  K  QA   V   +
Sbjct: 866 DATKVSQAFQDVRDQV 881


>gi|300121464|emb|CBK21983.2| unnamed protein product [Blastocystis hominis]
          Length = 935

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/952 (32%), Positives = 464/952 (48%), Gaps = 88/952 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            + +R TF+EFF++ GH  + SS ++P +DPTL+F N+GM  +K IF GQ  P       
Sbjct: 11  SAKVRQTFIEFFEERGHTFVKSSPVVPLDDPTLLFANAGMNQYKPIFLGQVDPSSPLAKL 70

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLTK +
Sbjct: 71  KRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEGAINFAWELLTKVY 130

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY T ++         DEEA+ +W+  + L  D I++   +DNFW M E GPCG
Sbjct: 131 KLDPSRLYATYFEGSEEDGVPCDEEAYAIWR--THLPDDHILKGNKHDNFWEMGEVGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           +++    +EIWNLVFMQF + +      LP   +DTGMG 
Sbjct: 189 PCSEIHYDRIGG-RNAADLVNKDDPNVLEIWNLVFMQFSRDSTGALHPLPAKHVDTGMGF 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG--------NNIVNHRVIVDHLRS 281
           ER+ ++LQ K +NYD D+F  L +A   V+G+ +Y G           + +RV+ DH+R+
Sbjct: 248 ERITSILQNKMSNYDTDVFLPLFKAIHAVSGVSEYTGLVAGQNGAQKDMAYRVVADHIRT 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  I DG  P+N GRGYVLRRI+RR + Y +  L         L+P +   M SA+PEL
Sbjct: 308 LTMAITDGAAPSNTGRGYVLRRILRRGVRYGQQILKCKPGFFSQLVPTVVENMKSAFPEL 367

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPL 398
            +    ++E +  E+  F +TL++GL               +++ GDVAF LY T G P+
Sbjct: 368 EEKMCFVQEVILDEELSFNRTLEKGLKRFAQEAEACQASGAKVITGDVAFFLYGTLGFPI 427

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + +    GL  +D+  FNQA+E  R  A+ +       TT                +
Sbjct: 428 DLTELMAEEAGLK-VDMEGFNQAIERARMEAKTNKKNGAEQTT----------------L 470

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK--VEVVFD 516
             +  + S   K    V    P       + S V A     +   E ++ +   V VV  
Sbjct: 471 VMEAEQVSHLQKSGVPVTDDLPKYTWFETLESEVVAFYGADKSFPEQIAPESGVVGVVLK 530

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           QTPFYAE+ GQ+ D G   G      +  V     G  +H  +VE+G LR   ++  ++D
Sbjct: 531 QTPFYAESEGQIADRGSLSGANGSFSVQQVL-SYGGYVLHIGVVEQGTLRLHDAVTCSVD 589

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           Y  R  ++ NH+ TH+++ AL  +L + V Q GS +    LRFD  H+K ++ A+L  IE
Sbjct: 590 YDYRLLIAPNHTLTHVMNWALRRVLQTEVDQKGSLVDDQKLRFDFNHTKAVSPAQLSEIE 649

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTK-YNDRVRVVSVEYEDGGVHSSALC 694
             VN+ +   L V T++   ++A       A+ G   Y    R +         +S   C
Sbjct: 650 RLVNEKVHDALKVFTKVCPIDEARKICSLRAVFGEAGYPSNPRWM--------DYSVEFC 701

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTH+S+  +     IV E SI  GIRRI AITG RA   ++  ++    L+    +   
Sbjct: 702 GGTHLSNLAQAKFFAIVEEGSISKGIRRIVAITGDRANESIVLANQIDGMLSHARSLHGK 761

Query: 755 NVVGRVEEIW-----------------EEYRKLQL-IHAKRKLQLNVEDLSC-------- 788
            +   V E+                  EE +KL+  + A+RK Q+  +  S         
Sbjct: 762 ELEAAVAELQQTIPTAVISVATKATFKEELKKLEKTMMAERKEQIAKQLESAIAEAEKVV 821

Query: 789 ---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +  +   + + +  +DS     +M  +++        +  +   K A   +V  E 
Sbjct: 822 KEVKEKQEGGRVFYTVEGIDSSNASKLMQKIRELDSESSYFIFSVDTAKVAMYALVAKEK 881

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
               F+A       A V  GG GGG P  AQ    + +  + A A     LK
Sbjct: 882 ASKTFSAKTWISEVAAVC-GGKGGGSPMQAQGQSKDPSNVEAAFAKAEEILK 932


>gi|159476100|ref|XP_001696152.1| hypothetical protein CHLREDRAFT_119554 [Chlamydomonas reinhardtii]
 gi|158275323|gb|EDP01101.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 879

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/914 (36%), Positives = 476/914 (52%), Gaps = 55/914 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL F++  GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ        T
Sbjct: 1   TGAEIREAFLSFYESKGHTRLPSSSLVP-EDPTVLLTIAGMLQFKPVFLGQAPRKVATAT 59

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T  F L  
Sbjct: 60  TTQKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPA 115

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++++VY+ED EA  +W+ + G++ ++I R+   DNFWS   TGPCGPCSE+++D    
Sbjct: 116 ERVWVSVYEEDAEAEAIWRDVVGVAPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHPE 175

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G    S E+  R+IE +NLVFMQ  +        L   +IDTGMGLERMA +LQ  +N
Sbjct: 176 -RGTQDASLEDDSRFIEFYNLVFMQLNRCPDGSLEPLAAKNIDTGMGLERMAQILQGVSN 234

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   ++  +  + G+ Y           +VI DH R+ +++++DG+ P+N GRGY
Sbjct: 235 NYETDLIFPIVAKAAAIAGVDYASAQPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRGY 294

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR +   RLLG  E     +         +  P + +    I + L  E+  F 
Sbjct: 295 VLRRLLRRVVMKGRLLGIREVFTPAVAEVAVALSAACDPAVQRNAQRIYDELAREESLFA 354

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGD-VAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            TL+RG   LD  L              AF LYDT G PL++ Q++  ARG+  +D+  F
Sbjct: 355 TTLERGQKQLDEYLDRAAAGGKAIAGPDAFMLYDTFGFPLELTQELAEARGV-DVDVSGF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              +E QR R++     L       +        G T F GY   RG             
Sbjct: 414 EAEMEAQRQRSKDSRETLDLTAQAGLAAL-AAAVGPTAFTGYSATRG------------- 459

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     +  V+ +++ G  VE   +G + EV+ D TPFYAE+GGQ+GD G     G
Sbjct: 460 ----------AGRVRGLMRGGAPVEVVEAGDRCEVLLDSTPFYAESGGQVGDMGVLTAHG 509

Query: 539 -----IRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  L ++D QK A G +FVH   V+ G LR    +   +D   RR++  +H+ATHL
Sbjct: 510 SGEAAAELSVSDCQKAAGGSVFVHTCEVKAGQLRVGDQVTALVDEDLRRRVRAHHTATHL 569

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG    Q GS      LRFD   ++ +T+AE+  +E  VN  +A   P+ TR
Sbjct: 570 LQSALKAVLGPDTCQQGSLCNFQRLRFDFNLARGMTAAEVAEVERLVNGWVAAAAPLETR 629

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+   A A+GA A+ G KY+D VRVV V        S  LCGGTHV++T EI    I+S
Sbjct: 630 VMDLAAAKAAGATAMFGEKYDDTVRVVDVPG-----ISMELCGGTHVANTAEIGAFKILS 684

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES I +GIRR+EA+ G  A  +L   D  ++ L+  LK+    V  RV  +  E R+   
Sbjct: 685 ESGIASGIRRVEAVAGPAAVEYLNQVDGLVRGLSGQLKLKPEEVPARVSAMQAELREAAK 744

Query: 773 IHAKRKLQLNVEDLSCHKIADVN-------FMSHIISEVDSKELKSVMDALQKKIQSGII 825
             A  K QL V          V         ++ +   V++K L+     LQ+ +     
Sbjct: 745 QLADLKAQLAVAQSQALVSQAVTAPQGGKVLVAELAGGVEAKALQEAAVKLQEALGDPAA 804

Query: 826 MLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +++    + K + +   +   +     A  L    AKV GGGGG G+P +AQ+GG + +K
Sbjct: 805 VVLASRVDDKVNFVAAFSAGAVKAGVQAGKLVGAVAKVCGGGGG-GKPALAQAGGKDASK 863

Query: 885 ADQAIAGVASFLKK 898
             +A+A  +  L +
Sbjct: 864 TSEALALASKMLNE 877


>gi|195438477|ref|XP_002067163.1| GK24844 [Drosophila willistoni]
 gi|194163248|gb|EDW78149.1| GK24844 [Drosophila willistoni]
          Length = 967

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/973 (31%), Positives = 473/973 (48%), Gaps = 88/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
                 +R  +L FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   FMTAKMVRDAYLGFFKEKKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLT 122

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               L + RLY+T +  DE        E  +LW  + G+  + ++  +  DNFW M ETG
Sbjct: 123 DRLKLPKDRLYVTYFGGDEASGLEPDLECKQLWLDL-GIKPEHVLPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           +++    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF+ L +  +  T         G        + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFQPLFEHIQSSTGAPAYQGRVGADDSDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L     +   L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLKAKPGMFASLVNTVVELLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGL 396
           PE+ +    I + +  E+++F KTL RG  LL+  +  LG D +I+ GDVA++LYDT+G 
Sbjct: 361 PEVKKDPQHIIDIINEEEQQFLKTLTRGRNLLNRTIEKLGADQKIIPGDVAWRLYDTYGF 420

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   + L  ID+  +  A    +  +   S G GS   E+I   +       Q
Sbjct: 421 PVDLTQLMAEEKSLE-IDMAGYEAA----KQNSYILSQGKGSSKIEEINLDVH-AISQLQ 474

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S   K + +   +  P +     SS + AI  + + V+   +GQK  +V D
Sbjct: 475 DQGVPTTNDSFKYKYEAESEERDSPYN-YETCSSKILAIRFENQFVQSISNGQKAGIVLD 533

Query: 517 QTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            T FYAE+GGQ+ D G  +   D     + D      G  +H  +VE G L     L L 
Sbjct: 534 NTNFYAESGGQIYDQGALVKANDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDDLQLH 592

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID   R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 593 IDVTRRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKGAMTIEQVAK 652

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682
            E+    ++ +N+P+  +      A +  G  ++    Y D VRV+S             
Sbjct: 653 TEELTRQMVYKNVPIYAKESKLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLEEQPN 712

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E G   S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   +   ++  
Sbjct: 713 GEAGDNTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEAIKAIKKSEQFE 772

Query: 743 KSLASFLKV---------SQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNVED 785
           + + + LK               V ++ E+ E+         +K ++ +  + L+  ++D
Sbjct: 773 QEIVT-LKATIEADTTGKDSKQHVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDD 831

Query: 786 LSCHKIADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIM 826
                 A V+                 + ++ ++++    K L + +  ++ ++     M
Sbjct: 832 KERALRAAVSVTVVERAKALCEENPTATVLVQQLEAYNNTKALDAALKQVRSQLPDTAAM 891

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
              +  + KK   L  V +  +++   A +  +  ++ L GG GGG+P  AQ+ G N   
Sbjct: 892 FFSVDVDSKKIFCLSSVPKSAVEKGLKANEWVQHLSQSL-GGKGGGKPESAQASGTNYES 950

Query: 885 ADQAIAGVASFLK 897
            D+ +     F +
Sbjct: 951 VDEILQLATKFAQ 963


>gi|169154546|emb|CAQ13590.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS)
           [Danio rerio]
          Length = 988

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/967 (32%), Positives = 474/967 (49%), Gaps = 87/967 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 31  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 91  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 210 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 268

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 269 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 328

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 329 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 388

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 389 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 448

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +   Y   +   
Sbjct: 449 LTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI---YAIDELRN 500

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K                 V A+ ++   V+E ++GQ+  V+ D+T 
Sbjct: 501 KGVAATDDSPKY--KYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLLDKTS 558

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ  D G  +   D          +   G  +H   V  G L+    L L +D 
Sbjct: 559 FYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTV-YGTLKVGDRLTLHVDE 617

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++  E+
Sbjct: 618 ARRRPIMSNHTATHILNYGLRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTDEVRRTEE 676

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YED 685
               +IA    V         A A  G  A+    Y D VRVVS+               
Sbjct: 677 IAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADPNSPA 736

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK---L 742
           G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D     L
Sbjct: 737 GSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADALKLSL 796

Query: 743 KSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +LA  +K         Q  +    E +      ++RK ++  + + L+  ++DL     
Sbjct: 797 DALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLDRASK 856

Query: 792 ADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           ADV                     +  + S   +K L   +  L+        ML  +  
Sbjct: 857 ADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLFTVDN 916

Query: 833 E-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N     +A+ 
Sbjct: 917 DAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQEALQ 975

Query: 891 GVASFLK 897
             + F +
Sbjct: 976 LASEFAR 982


>gi|167756780|ref|ZP_02428907.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402]
 gi|237734498|ref|ZP_04564979.1| alanyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|167702955|gb|EDS17534.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402]
 gi|229382318|gb|EEO32409.1| alanyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 869

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/903 (35%), Positives = 489/903 (54%), Gaps = 63/903 (6%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + +R  FL+FF+  GH++ PS SLIP +DPTL++ N+G+   K  F G   P  
Sbjct: 1   MKQLTGNQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAAIKKYFDGTITPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+LLT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKDAIDFAWELLTDEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  ++ +LYITV+D DEEA+  W  + G++ D +++     NFW + E GPCGP SEIF
Sbjct: 117 WFAFEKDKLYITVHDHDEEAYDYWVNVKGVAVDHMLKTPG--NFWEIGE-GPCGPDSEIF 173

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGM 228
           +D+GE       G        E +RYIEIWNLVF Q+  Q     ++   LP+ +IDTGM
Sbjct: 174 YDRGEKYDPDGLGTKLFYEELENDRYIEIWNLVFSQYNSQEGVAREDYKELPQKNIDTGM 233

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           GLER+ +++Q    N+D D F  +I   E++  + Y+ N  + +RVI DH+R+ +F +AD
Sbjct: 234 GLERITSIIQGGETNFDTDFFLPIIHEVEKLANVSYQENK-MAYRVIADHIRTVTFALAD 292

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G L  N GRGYVLRRI+RRA+ Y + +G  +  M  L+  +   M   Y  L +    I 
Sbjct: 293 GALFDNAGRGYVLRRILRRAVRYGKQIGIEKAFMYDLVDVVSEIMKEFYDYLPEKVSYIS 352

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KTL  G  LL  +++    D +++G  AFKLYDT+G P ++  +I    
Sbjct: 353 DLVKKEEEAFHKTLTNGEKLLSSIIAK-NTDGVISGKDAFKLYDTYGFPFELTLEIAEES 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            L  +D  +F   L+ Q+ R+R       S  ++K    L      + F           
Sbjct: 412 DLK-VDEEAFRAELKVQQERSRGARTDSESMASQK--PDLMAFDLPSNF----------- 457

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              ++S+V  + + G   +        EV+FD T FYAE GGQ 
Sbjct: 458 -------------EYDPTNINSVVIGLFKDGVKTDRI--DDYGEVIFDTTTFYAEMGGQC 502

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    +  + ++ +V K      +H   ++ G +R    L L +D   R ++  NHS
Sbjct: 503 ADTGYVYNENCQGEVINVLKAPNQQHLHFVKLKTGTIRVGDILTLDVDKAKRNKIIANHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+L  AL  I+G H++Q GS +    LRFD TH + IT+ +LK IE+ VN++I   + 
Sbjct: 563 ATHILQAALKEIIGKHINQAGSYVDDHRLRFDFTHFEKITNEQLKLIENQVNNVIFDGVA 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    M +++AI SGA AL   KY D+VRVVS+     G +S  LCGG HVS++  I L 
Sbjct: 623 VDIAHMTKDEAINSGAMALFDEKYGDKVRVVSI-----GDYSMELCGGCHVSNSANIGLF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEY 767
            I +E S+ +G+RRIEA+TG+ A   L+ + E +  +++ LK+  +  VV +V  + EE 
Sbjct: 678 KIEAEESVGSGVRRIEAVTGKTAYQALVQEKETVDIISNILKLKNRKEVVAKVTALTEEL 737

Query: 768 RKLQLIHAKRKLQLNV--EDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSG 823
              +        QLN        + I ++N +  +  E  +D+ + K +    + KI+ G
Sbjct: 738 SNTKKEIEILSGQLNALNAASKANDIQEINGVKVLFVEEMIDAAKAKQLAFDFRDKIEEG 797

Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           I++LV    E K S  + VT++ +   + A D+ +    V+  G GGG+P  AQ G P  
Sbjct: 798 IVILV-TQFEDKCSYFVGVTKNYVATGYKAGDIIKKINAVV-DGRGGGKPDFAQGGCPIN 855

Query: 883 NKA 885
           +K 
Sbjct: 856 DKI 858


>gi|325846721|ref|ZP_08169636.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481479|gb|EGC84520.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 870

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/915 (34%), Positives = 502/915 (54%), Gaps = 72/915 (7%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT+  ++D+
Sbjct: 66  SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAFEFLTENLEIDK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+++VY++D+EA+K+W +  GLS D+I+R    DNFW + E GPCGP SEIF D+G  
Sbjct: 122 DLLWVSVYEKDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVE 180

Query: 183 IP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                    PG +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ
Sbjct: 181 KAIDENDNKPG-NDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K N ++ID+ +++I+  E+++  KY+ N  + ++ RVI DH ++ +F+++DGI P+NE 
Sbjct: 240 NKDNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     +  ++  +       Y EL+  K  I   ++ E+ 
Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSVIEYVIDSYKDEYDELVDRKDKIISVIKKEEA 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  T+D GL +L+  +  L ++    L+G+ AFKLYDT+G PLD+ ++IL    L  +D
Sbjct: 360 NFQNTIDSGLDILNEYIKDLRENNKDTLDGEDAFKLYDTYGFPLDLTKEILTENNLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ +E QR+ AR         + + I     +++  T+F+GYD L           
Sbjct: 419 TKEFDKQMENQRNLARNARKSDAGWSLDSINI---DEFDKTEFVGYDDLE---------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        V + +  +    E V     G K  V+ D+T FYAE GGQ+ DTG  
Sbjct: 466 -------------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I    + ++ +VQKK E I +H+  V  G L         +D + R  ++ NH+ATHLL 
Sbjct: 513 ITGSAKAKVYNVQKKNE-IIIHYVEVIDGDLNL-AKADFIVDKERRLDITRNHTATHLLD 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  IL   V Q GS +  + LRFD T+   ++  E++ IE+ +N+ I Q L V   IM
Sbjct: 571 QALRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIEKIENEINEKIRQQLKVKKEIM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             +++   GA  L   KY D VRVVS+       +S  LCGG HV+++ E+++  I+ ES
Sbjct: 631 PYKESEKLGAIGLFEDKYKDMVRVVSI-----DDYSIELCGGCHVNNSSEVLMFKILQES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  +GIRRIEAITG++   +L      +  ++  LK +  N++ + E + EE + L+   
Sbjct: 686 SAASGIRRIEAITGRKVYEYLNSNLGLINVVSKALKTNPKNILLKAESLNEEIKNLKSDI 745

Query: 775 AKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            K K + N +D+             +  + H     D   L++  + +++K +  I++  
Sbjct: 746 QKLK-EFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV-------LGGGGGGGRPHMAQSGGPN 881
            ++ + K      V++ L +R+NA  + +  +K+                 + AQ+GG +
Sbjct: 805 TVNND-KIVFTASVSDSLTNRYNAGKIVKEVSKITGGNGGGKK--------NFAQAGGKD 855

Query: 882 GNKADQAIAGVASFL 896
            +K D+A+  V   +
Sbjct: 856 ISKLDEALKKVYELI 870


>gi|299141813|ref|ZP_07034948.1| alanine--tRNA ligase [Prevotella oris C735]
 gi|298576664|gb|EFI48535.1| alanine--tRNA ligase [Prevotella oris C735]
          Length = 886

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/933 (34%), Positives = 490/933 (52%), Gaps = 89/933 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-A 60
              + +R ++ +FF+  GH+++ S+ ++  +DPTLMFTN+GM  +K+I  G + P     
Sbjct: 1   MTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDVR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     L
Sbjct: 61  RVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLHL 120

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +   LY+TV++         D+EA   W K   + AD II    +DNFW M +TGPCGPC
Sbjct: 121 NPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           +EI  D    + +    G    +++  + IEIWN+VFMQ+ ++       LP   IDTGM
Sbjct: 179 TEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNHR 273
           G ER+  +LQ+K +NYD D+F+ +I+  E ++G KY          EG +      +  R
Sbjct: 239 GFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAMR 298

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTE 332
           V+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   L   E  +  LLP L  E
Sbjct: 299 VVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVQE 358

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKL 390
           MG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L       L+G  AF+L
Sbjct: 359 MGQAYPELSAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTELDGTSAFRL 418

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           +DT+G PLD+ + I    G   +D   FN+ + +Q++RAR  ++          W  ++E
Sbjct: 419 FDTYGFPLDLTELICREHGYT-VDEKGFNEEMAKQKARARNAAV-----VENGDWEVIRE 472

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G   F+GYD    +  +   RKV  +K                               
Sbjct: 473 --GEQVFVGYDYTEYTCHILRYRKVTQKKNTF---------------------------- 502

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V D TPFY E GGQ+GD G  + +   ++I D  K+     +H  IV++     +  
Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDT-KRENNQSIH--IVKQLPKDLQAE 559

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  +D + R   + NH+ATHLL +AL  +LG HV Q GS + P  LRFD +H + +T  
Sbjct: 560 FMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTEE 619

Query: 631 ELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           EL+ +E  VN +I ++ P+        E+A   GA AL G KY D+VRVV          
Sbjct: 620 ELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFGP------ 673

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGG H  STG I    I+SESS+ AGIRRIEA+TGQ     +    + +  L S  
Sbjct: 674 SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSMF 733

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEV 804
             +  ++   +++   E+ +++    K + Q      E+L      +  V  +  ++  +
Sbjct: 734 N-NSKDLKATLKKFIGEHDEMRKEIEKFQAQAVERTKEELLKRAQNVNGVQVIKAVLP-L 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862
           +    K +   L++ I   +++++G +   K  + ++ ++D++     NA  +   +AK+
Sbjct: 792 EPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIHEAAKL 851

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           + GG GGG+PH AQ+GG N +    A+  V   
Sbjct: 852 IQGG-GGGQPHYAQAGGKNLDGISAAVDKVIEL 883


>gi|167753580|ref|ZP_02425707.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216]
 gi|167658205|gb|EDS02335.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216]
          Length = 847

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/894 (36%), Positives = 489/894 (54%), Gaps = 77/894 (8%)

Query: 28  LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87
           ++  NDPTLMFTN+GM  FK+IF G     Y      QKC+R  GKHNDL+ VG    HH
Sbjct: 1   MVVKNDPTLMFTNAGMNQFKDIFLGNIPRPYPRAADTQKCLRVSGKHNDLEEVGHDTYHH 60

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKL 139
           T FEMLGN+SFG YFK+ AI  AW+LLT  + LD+ R+Y TV++         D+EA+ +
Sbjct: 61  TMFEMLGNWSFGDYFKKEAIGWAWELLTGVYGLDKSRMYATVFEGSPEDGVPFDQEAYDI 120

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPG---SSEEGE 195
           W +   L AD IIR   +DNFW M + GPCGPCSEI +D + E     +PG    ++   
Sbjct: 121 WLQY--LPADHIIRGNKHDNFWEMGDVGPCGPCSEIHYDLRDESEIAAVPGREMVNQGSP 178

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
             IEIWNLVFMQF ++       L    IDTGMG ER+  +LQ K +NYD D+F+  IQ 
Sbjct: 179 LVIEIWNLVFMQFNRKANGSLEPLAANCIDTGMGFERLCMILQGKKSNYDTDVFQPTIQR 238

Query: 256 SEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
              ++G  Y  +    V  RV+ DHLR+ SF IADG LP+N   GYV+RRI+RRA+ Y  
Sbjct: 239 IAAMSGKTYGADEKCDVAMRVVADHLRAISFSIADGQLPSNVKAGYVIRRILRRAVRYGY 298

Query: 314 L-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             LG+ EP +  L+  L  +MG  +PEL   + LIE+ +  E+  F +TL  G+ LLDGV
Sbjct: 299 TYLGFNEPFICRLVAGLVDQMGGQFPELKAQQTLIEKVIEEEESSFLRTLATGINLLDGV 358

Query: 373 LSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           ++ + K   E ++G  AF LYDT+G P+D+ + I   +G+  +D+ +F + L+ Q+ R+R
Sbjct: 359 MAEVRKSGGERISGKDAFLLYDTYGFPIDLTELIAREQGIE-VDLEAFEKELQAQKERSR 417

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
             +        E I          ++FIGYD L     +   R+V  +            
Sbjct: 418 NAAAVDTDDWKELI------HIKQSEFIGYDTLSAEVKIARYRRVSSKGRV--------- 462

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                                ++VFD+TPFY  +GGQ+GD G       R+ +   +K+ 
Sbjct: 463 -------------------SYQLVFDRTPFYGNSGGQIGDIGYIETANERIPVVATEKE- 502

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G+ +H  IV +     E + +  +D + R+  + NH+ATHL+H AL  +LG+HV Q GS
Sbjct: 503 NGLIIH--IVTQLPENPEATFMAVVDPEKRQAAANNHTATHLMHEALRKVLGTHVEQKGS 560

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLG 669
            +TP+ LRFD +H + +T  EL+ +E  VN  I  N P+   R   +E+A A+GA  L G
Sbjct: 561 LVTPEYLRFDFSHFQKVTHEELRRVEQLVNRAIRANYPLEEKRDATKEEAAAAGAMMLFG 620

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
            KY DRVR+V          S  LCGGTHVS+TG I    I++ES+I AG+RRIEA TG 
Sbjct: 621 EKYGDRVRMVRFG------TSVELCGGTHVSATGNIGFFKILNESAISAGVRRIEATTGA 674

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +A   +   ++ ++++A +L   Q  ++  +++I E    L+      + +   E     
Sbjct: 675 KAEEVIYAAEDTMRNVADYLNNPQ--ILQSIKKIMESNEALKHEMEAIRREQVAE--WAA 730

Query: 790 KIADVN----FMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
           KI D       M  + ++ D     +K +  A++ + ++ I++++G   + K ++ + + 
Sbjct: 731 KIVDSTPERGGMRLMATQTDRRPDFIKDLAFAVRSRSKN-IVLVIGSINDGKPTLTVALG 789

Query: 844 EDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +D++    NA  + R +AK + GG GGG+P +A +GG N +    AI      +
Sbjct: 790 DDIVAQGVNAGVVVREAAKAINGG-GGGQPFLATAGGKNPDGIQAAIDKAVELI 842


>gi|213512300|ref|NP_001133550.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar]
 gi|209154450|gb|ACI33457.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar]
          Length = 967

 Score =  791 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/973 (32%), Positives = 482/973 (49%), Gaps = 92/973 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           +   + IR  F++FF ++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +  
Sbjct: 4   LLTAAQIREKFIDFFIRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPM 63

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A  +A +LLT
Sbjct: 64  ARLKRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACTMALELLT 123

Query: 116 KEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           KEF +   RLY+T +   EEA         ++W  + G+   +II  +  DNFW M +TG
Sbjct: 124 KEFGIPIERLYVTYFGGHEEAGLDPDLECKQIWLDL-GMDEARIIPGSMKDNFWEMGDTG 182

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI FD+           + +    +EIWNLVF+Q+ ++++ E   LPK SIDTG
Sbjct: 183 PCGPCSEIHFDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQYNRESETELKPLPKKSIDTG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MGLER+ +VLQ K +NYD DLF    QA ++ TG +               + +RV+ DH
Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFIPYFQAIQKGTGARDYTGKVGAEDVDGIDMAYRVLADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG  +     L+  +   +G A+
Sbjct: 302 ARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQKGFFATLVDVVVESLGDAF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +   ++++ +  E+E+F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P
Sbjct: 362 PELKKDPDMVKDIINEEEEQFLKTLSRGRKILDRKIQSLGDSKTIPGDTAWLLYDTYGFP 421

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD+   I   RG+  +D+ +F    EE++  A+  S G GSG  + I   +   Y     
Sbjct: 422 LDLTALIAEERGMM-VDVAAF----EEEKKAAQVKSQGKGSGDEDHIMLDI---YAIEDL 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
               +      +K             +       V A+ ++   VEE  +GQ+  V+ D+
Sbjct: 474 RNKGIAATDDTLKYSYSA--DDSGKYVFEQAVGTVLALRRERAFVEEVTTGQECGVLLDK 531

Query: 518 TPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           T FYAE GGQ  D G        + D +   + + Q    G +V H     G L+    +
Sbjct: 532 TSFYAEQGGQSFDEGYMLREDDSVDDRMEFTVKNTQ--VRGGYVLHVGTVYGTLKVGDHV 589

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +L +D   RR +  NH+ATH+L+ AL  +LG    Q GS + PD LRFD T    +++ E
Sbjct: 590 ILHVDEARRRPIMSNHTATHILNFALREVLGE-ADQRGSLVAPDRLRFDFTAKGALSTEE 648

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------ 684
           ++  E+    +I     V         A A  G  A+    Y D VRVVS+         
Sbjct: 649 VRRTEEIACTMIRDAKHVYAMDTPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVADLLA 708

Query: 685 -----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                 G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+      D
Sbjct: 709 DPSSTAGSLTSIEFCGGTHLRNSGHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAHRKAD 768

Query: 740 EKLKSLASF---LKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785
              +SL++    +KV      +V   + ++ E        +++K ++  A + L+  ++D
Sbjct: 769 ALRQSLSALGEKVKVQTAPNKDVQKEIADMTEFLGMAVISQWQKDKMREALKGLKKTMDD 828

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +  L+ +      M
Sbjct: 829 LDRASKADVQKRVLEKTKEMIDSSPNQPLVVMEMESGASAKALNESLKLLKTQSPQTAAM 888

Query: 827 LVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  +  K   L  V +D+ +R   A +  +     L  G GGG+   AQ+ G N + 
Sbjct: 889 LFTVDHDAGKIVCLCQVPQDVANRGLKASEWVQELCP-LMDGKGGGKDMSAQATGRNTHC 947

Query: 885 ADQAIAGVASFLK 897
            ++A+     F +
Sbjct: 948 IEEALQMANQFAQ 960


>gi|325479403|gb|EGC82499.1| alanine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 870

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/918 (34%), Positives = 506/918 (55%), Gaps = 70/918 (7%)

Query: 1   MSNV--SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M N+  + +R+ +L FF  +NGH LL S  LIP +D +L+  N+GM P K  FTG++K  
Sbjct: 1   MKNLGMNELRSKYLNFFANENGHTLLKSFPLIPVDDDSLLLINAGMAPLKKYFTGEKKMK 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T+ QKCVR      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  A+  LTKE
Sbjct: 61  NNRATSSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYQFLTKE 116

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
            ++ +  +++TV+ ED+EA+ +W    GL +++I+R    DNFW + E GPCGPCSEIF 
Sbjct: 117 LEISKDDIWVTVFKEDDEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFV 175

Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           D+G             +++ +R++E+WNLVF QF +  +     L   +IDTGMGLER+A
Sbjct: 176 DRGSDRAVDENDVKPGNDDSDRFMEVWNLVFTQFNKDAQGNYTPLAHPNIDTGMGLERIA 235

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292
            VLQ K N +++D+   +I   E++ G+KY+ +    V+ RVI DH ++ +FL+ADG++P
Sbjct: 236 MVLQNKDNIFEVDVMVEIISEIERLAGIKYKEDKKADVSIRVIADHAKAMTFLVADGVIP 295

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRR++RRA  + +LLG     + +++  +       Y EL + +  I+E ++
Sbjct: 296 SNEKRGYVLRRLIRRAYRHGKLLGIEGEFLTNIIDKVIDTYKVEYEELAKNREKIKEIIK 355

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E++RF KT+D+GL  L+ ++S + ++   +LNG+ AFKLYDT+G PLD+ ++IL  + L
Sbjct: 356 DEEDRFQKTIDQGLERLEVLISDMEEENKDVLNGEEAFKLYDTYGFPLDLTKEILEEKNL 415

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   FN+ +  Q+  AR         + + +     +    T F+GYD L       
Sbjct: 416 K-VDEEVFNEQMNIQKQTARQARKKDAGWSLDNLNT---DGIRKTDFVGYDDLD------ 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                            V   +  I  + + V     G K  ++ D+T FYAE GG++ D
Sbjct: 466 -----------------VDGEILNIFVENDQVSSINEGSKGIIISDKTSFYAEGGGEVAD 508

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG    D    ++ DVQK  + I+ H+  V  G +    +    +D   R  +  NHSAT
Sbjct: 509 TGFISSDNFEAKVMDVQKLKD-IYFHYVEVISGKISINDTAKFKVDRDKRFDIQRNHSAT 567

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG  + Q GS +  + LRFD TH+K + + EL+ +ED VN+ IA+   V 
Sbjct: 568 HLLDQALRDVLGESIKQAGSLVDENKLRFDFTHNKALLTEELRQVEDIVNNEIAKQNFVK 627

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +++ + +   GA  L   KY D+VRVVS+     G +S  LCGG HV+ T +I++  I
Sbjct: 628 KEVVDYKKSQEMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKI 682

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           V ESS+ AG+RRIEAITG++A   L   D+ +K++A+ L  +  N+  R++ I +E    
Sbjct: 683 VQESSVSAGVRRIEAITGRKAYELLQNSDKSIKTIANKLNTNVNNISNRIDSIEKEIENY 742

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +   ++ K   + + +     S   +  +N +          EL+   + ++    + II
Sbjct: 743 KSEISRLKSTNSSDIISDLKNSVRNVKGINLLVKKFENASMDELREYENRIKNSFDNMII 802

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV-------LGGGGGGGRPHMAQSG 878
           +   +S   K    + V + L+D+++A  + R  A+V                 + AQ+G
Sbjct: 803 IFASVS--DKIVFTVSVDDKLVDKYDAGKIVREIAQVTGGNGGGKK--------NFAQAG 852

Query: 879 GPNGNKADQAIAGVASFL 896
           G + +K D+A+  V   +
Sbjct: 853 GKDISKLDEALNKVNEII 870


>gi|217077683|ref|YP_002335401.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037538|gb|ACJ76060.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 859

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/906 (38%), Positives = 521/906 (57%), Gaps = 57/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FLEFF+K GH++LPS+SLIP  DP L+FT +GMVPFK IF G+  PVY  +
Sbjct: 1   MRSDEIRRLFLEFFEKKGHKILPSASLIP-EDPQLLFTIAGMVPFKPIFWGKVDPVYTRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ +T+   + 
Sbjct: 60  ATCQKCVRT----TDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFVTQVLKIP 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG 180
           + RL+I+VY +D EA+++W+KI G+ + KI+++   DNFW     TGPCGP +EIF+D  
Sbjct: 116 EERLWISVYKDDNEAYEIWRKI-GVPSSKILKLGKEDNFWGPAGPTGPCGPDTEIFYDTQ 174

Query: 181 ECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
             +P   G  P  +    R++EIWNLVF +F Q        L + +IDTG GLER+A ++
Sbjct: 175 RDVPTSDGKEPTPANTEGRFVEIWNLVFTEFYQDENGNLLPLKRKNIDTGAGLERVAAMM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295
           Q   NN+D DLF  +I+    +  ++Y+ +    V+ RVI DH+R+  FLI+DG+ P+NE
Sbjct: 235 QGVYNNFDTDLFAPIIEGICNILNVEYKKDEKIDVSIRVIADHIRALVFLISDGVFPSNE 294

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RRA  + +LLG   P +  L+  +  +MG+ YPE+++ K   +E +  E+
Sbjct: 295 GRGYVLRRILRRAARHGKLLGANAPFLHKLVDFVVNKMGNVYPEIVEKKEFTKEIILGEE 354

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           +RF + L++GL L++ V+     +  ++G++AFKLYDT+G PLDI++D+    G   +D 
Sbjct: 355 KRFLQNLNKGLELVEKVVRE--NNGKISGEMAFKLYDTYGFPLDILRDLAEENGY-VLDE 411

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ +E+QR  A++ + G    T    +  LK K   ++F+GY+              
Sbjct: 412 QGFNEYMEKQRLLAKSAA-GDVEFTKRTGYEDLKLK---SEFVGYEKYEEY--------- 458

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V AI    E V EA      E+V ++TPFYAE GGQ+ DTG   
Sbjct: 459 --------------SKVLAIKV-SEFVNEAQDAD-CEIVLERTPFYAEKGGQVSDTGIIK 502

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G+     +  V    EGI VH   + +G L     +   ID + R+  + NH+ATHLLH 
Sbjct: 503 GENGEFLVEYVYSPTEGIIVHRGKL-KGRLSVGEKVYAKIDIEKRKATARNHTATHLLHA 561

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG+HV Q GS +  + LRFD TH   ++  E++ +E  VN++I + + V+    +
Sbjct: 562 ALRKVLGTHVRQAGSLVESEKLRFDFTHFNALSVDEIEQVEKMVNNVILEAIDVIVEEKD 621

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            ++A+  GA AL   KY D+VRVV V     G  S  LCGGTHV +TGEI L  IVSE S
Sbjct: 622 YDEAVKEGAMALFEEKYGDKVRVVKV-----GNFSEELCGGTHVKNTGEIGLFKIVSEGS 676

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + AGIRR+EAITG  +  +L   +     +   L+V+   V  R+E + EE +KL     
Sbjct: 677 VSAGIRRVEAITGLNSLMYLQRLENNWLKVRKVLEVNDEEVFRRIENMKEEIKKLNSEIK 736

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             K ++   D        +N + +I+     ++   L+ + D L  K    +++   + +
Sbjct: 737 SLKQKMVDIDSIYKNKKVINNVEYIVEKFEGLEVDVLRDLADRLVDKGVDLVVLFDKVGE 796

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +    V    +  L    +A ++A+  +KVLGGGGG GRP  AQ+GG +  K  +AI  +
Sbjct: 797 KVILIVKKKKSNQL---LHAGNIAKELSKVLGGGGG-GRPDFAQAGGKDFGKVQEAIKKL 852

Query: 893 ASFLKK 898
              L++
Sbjct: 853 EEILRE 858


>gi|148240734|ref|YP_001226121.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|205830237|sp|A5GPF9|SYA_SYNPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147849273|emb|CAK24824.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 891

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/898 (37%), Positives = 501/898 (55%), Gaps = 58/898 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  FL FF++ GH+ +PS+SL+P  DPT++ T +GM+PFK IF GQ++      T
Sbjct: 16  TGAEIRDAFLAFFEERGHKRMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCAT 74

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T  F LD 
Sbjct: 75  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVFGLDP 130

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ +D+EA ++W+++ G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 131 KNLVVSVFRDDDEAEQIWREVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPE 190

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+ +R+IE +NLVFMQ  +  +     L   +IDTGMGLERMA +LQ+  N
Sbjct: 191 L-GDDGIDLEDDDRFIEFYNLVFMQSNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPN 249

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LIQA+ +  G+ Y   +     + +VI DH R+ + LI+DG+  +N GRGY
Sbjct: 250 NYETDLIFPLIQAAAERAGVDYHQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG  +P +  +  A    M SA+P+L + + +I   L+ E+ RF 
Sbjct: 310 ILRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLSERREVILAELQREEARFL 369

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+   K + ++G+ AF+LYDT+G PL++ Q+I    GLA +D+  F 
Sbjct: 370 ETLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLAGFE 426

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E+QR RA+A ++ +     + I   +      T+F GY+ L                
Sbjct: 427 TAMEQQRQRAKAAAVSIDLTLQDAIDQ-VAAGLQDTEFRGYEQLE--------------- 470

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---- 535
                    SS ++A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G  +    
Sbjct: 471 --------QSSSIQALVVNGEPAQSAVAGDAVQVVLDVTPFYGEGGGQIGDRGTLVADGQ 522

Query: 536 -GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            GDG+ + +  V +    +FVH   V+RG L     +   +D   RR+   NH+ATHLL 
Sbjct: 523 AGDGLIVMVESVSRNRS-VFVHSGRVQRGALAVGDVVHGRVDRACRRRAQANHTATHLLQ 581

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL   +   + Q GS ++ D LRFD    + +T+ EL+ IE  +N  IA    +  + M
Sbjct: 582 AALKQEVDPGIGQAGSLVSFDRLRFDFHCPRAVTAEELERIESLINGWIADAHALEVQEM 641

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             E A A+GA A+ G KY D V        D    S  LCGGTHV++T EI L  IVSES
Sbjct: 642 AIEKAKAAGAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVSES 696

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----- 769
            + AGIRRIEA+ G     +L  +D  +K L    K   G ++ RV  + +E +      
Sbjct: 697 GVAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVTALQDELKATGKAL 756

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                     +          + D   +   +  VD   L+    +L  ++  G  +++G
Sbjct: 757 AAAQAELAVAKSAALATKAVAVGDFQLLVERLDGVDGTGLQGAAQSLADQLGDGAAVVLG 816

Query: 830 ISKE----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
              +     K  ++    + ++ +   A       AK+ GGGGG GRP++AQ+GG +G
Sbjct: 817 GLPDPADQGKVILVAAFGKAVIAQGQQAGKFIGGIAKLCGGGGG-GRPNLAQAGGRDG 873


>gi|113195586|ref|NP_001037775.1| alanyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio]
 gi|94734005|emb|CAK04586.1| alanyl-tRNA synthetase [Danio rerio]
          Length = 991

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/971 (32%), Positives = 479/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 31  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 91  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 210 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 268

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 269 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 328

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 329 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 388

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+   + GD A+ LYDT+G PLD
Sbjct: 389 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGFPLD 448

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +   Y   +   
Sbjct: 449 LTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI---YAIDELRN 500

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K                 V A+ ++   V+E ++GQ+  V+ D+T 
Sbjct: 501 KGVAATDDSPKY--KYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLLDKTS 558

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ  D G  + +       +   + + Q +  G  +H   V  G L+    L L
Sbjct: 559 FYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVR-GGYVLHIGTV-YGTLKVGDRLTL 616

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++
Sbjct: 617 HVDEARRRPIMSNHTATHILNYGLRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTDEVR 675

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+    +IA    V         A A  G  A+    Y D VRVVS+           
Sbjct: 676 RTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADP 735

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D  
Sbjct: 736 NSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADAL 795

Query: 742 ---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLS 787
              L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++DL 
Sbjct: 796 KLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLD 855

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +  L+        ML 
Sbjct: 856 RASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLF 915

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N     
Sbjct: 916 TVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQ 974

Query: 887 QAIAGVASFLK 897
           +A+   + F +
Sbjct: 975 EALQLASEFAR 985


>gi|300725879|ref|ZP_07059342.1| alanine--tRNA ligase [Prevotella bryantii B14]
 gi|299776816|gb|EFI73363.1| alanine--tRNA ligase [Prevotella bryantii B14]
          Length = 888

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/935 (34%), Positives = 495/935 (52%), Gaps = 90/935 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR ++L++F+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G ++P  + 
Sbjct: 1   MMTANEIRDSYLKYFESKGHVIVPSAPIVVKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
               QKC+R  GKHNDL+ VGR +   HHT FEMLGN+SFG YFKE AI +A++ L    
Sbjct: 61  RADTQKCLRVSGKHNDLEEVGRDSALSHHTMFEMLGNWSFGDYFKEGAIDMAYEYLVDVL 120

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD + LY+TV++ DE        EA K W+K      + I+    +DNFW M + GPCG
Sbjct: 121 KLDPKDLYVTVFEGDEAENLERDDEAAKFWEK--HFPKNHIVNGNKHDNFWEMGDQGPCG 178

Query: 171 PCSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           PC+EI  D + E     +PG    +++  + IEIWN VFMQ+ ++       L    IDT
Sbjct: 179 PCTEIHIDFRSEEEKAKVPGEELVNKDHPKVIEIWNNVFMQYNRKADGTLEPLKMQVIDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271
           GMG ER+  ++Q K +NYD D+F  +I   E+++G KY     EG+N           + 
Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPIIDEIERISGKKYNHTFPEGDNGEGINEEQKVDIA 298

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALC 330
            RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ Y    L   E  M  LLP L 
Sbjct: 299 IRVVADHLRAVAFAIADGQLPSNAKAGYVIRRILRRAVRYYYTFLDQKEAFMFKLLPTLV 358

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388
            EMG AYPEL   + LI   ++ E++ F +TL++G+ LL+G +  L  +    L+G  AF
Sbjct: 359 AEMGGAYPELKAQQELIGRVMKEEEDSFLRTLEKGINLLNGDMETLKANGKTELDGASAF 418

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +L+DT+G PLD+ + I    G   +D   FN+ + +Q++RAR       +      W  +
Sbjct: 419 RLFDTYGFPLDLTELICTENGYT-VDEKGFNEEMAKQKARARNA-----AAVENGDWQVI 472

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
           KE  G  +F+GYD       +   R+V  +K                             
Sbjct: 473 KE--GEQEFVGYDYSEYPCHILRYRQVTQKKNTF-------------------------- 504

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              E+V D TPFY E GGQ+GD G  + +   + +TD  K+     +H  IV++      
Sbjct: 505 --YELVLDHTPFYGEMGGQVGDCGTLVSENETVTVTDT-KRENNQSIH--IVKKLPEDLN 559

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
              +  +D   R   + NH+ATHLL +AL  +LG HV Q GS +    LRFD +H + +T
Sbjct: 560 AEFMACVDLDKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDDKVLRFDFSHFQKVT 619

Query: 629 SAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             E++ +E  VN +I Q+LP+        E+A   GA AL G KY D+VRVV        
Sbjct: 620 DEEIRQVERIVNAMIRQDLPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFGP---- 675

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             S+  CGG H  STG I    I+SESS+ AG+RRIEA+TG+     L    + L  + S
Sbjct: 676 --SAEFCGGIHAQSTGRIGFFKIISESSVAAGVRRIEALTGKACEETLYTLQDTLSDVKS 733

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIIS 802
               +  ++   +++  +E+  ++    K + Q+      DL     +I  V  +  ++ 
Sbjct: 734 LFN-NAKDLHAVIQKYIDEHDAMKKEVEKFQAQMVERTKNDLVSKAQEINGVKVVKAVLP 792

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860
            ++    K ++  +++ I   ++ ++G +   K  + ++ ++D++     NA  + R +A
Sbjct: 793 -LEPNAAKDLVFKIREAIPENLVAVIGSTSNDKPMLSVMFSDDMVKNHDLNAGKMIREAA 851

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           K++ GG GGG+PH AQ+GG +      A+  +   
Sbjct: 852 KLIKGG-GGGQPHYAQAGGKDVEGIHAAVDKIIEL 885


>gi|68171547|ref|ZP_00544925.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67999031|gb|EAM85704.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 887

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/918 (41%), Positives = 550/918 (59%), Gaps = 60/918 (6%)

Query: 1   MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N  VS++R +F++FF KNGH++ PSS LI  +DP+L+FTN+GMV FK +FT       
Sbjct: 2   MKNNLVSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANV 61

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T+ QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE 
Sbjct: 62  NTATSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKEL 121

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L + RLY TVY +D+EAF LWKKISG+S  +II+ITT+DNFWSM  TGPCGPCSEIF+D
Sbjct: 122 SLSKDRLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYD 181

Query: 179 QGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            G+ + GGLPG   E+G R+ EIWNLVFMQ++++   E  +LPK  IDTGMGLER+A V+
Sbjct: 182 YGDNVKGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVM 241

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           Q   +NYDI LFK LI AS++ +G      N + HRVI DH+RS++FLIA+G+ P NEGR
Sbjct: 242 QGVHDNYDISLFKALIAASKEQSG---NSTNELAHRVIADHVRSAAFLIAEGLTPGNEGR 298

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLR 352
            Y+LRRI+RRA  Y  +L Y + LM  + P L  E     M   YPELI AK LI   L+
Sbjct: 299 NYILRRIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILK 358

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+E F  TL R L LL+  L +L   +IL+GD+ FKLYDT+G P+DI  DI+  +G+  
Sbjct: 359 IEEENFKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK- 417

Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            D   F   + +Q+ R++  HS+       E+ W  +KE+ G+T+ +GY+          
Sbjct: 418 FDEQGFYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKSVGYE---------- 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             + V +IV  G + VE A  G KV ++ D TPFYAE+GGQ GD
Sbjct: 468 -------------RYDTKATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGD 514

Query: 531 TGC----------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            G              +    ++ D +K  + +++H  I+++G L     +   ID + R
Sbjct: 515 VGIFNVIVRQEKELFANDNIAEVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R L  NHSATHLLH+ L + + S + Q GS ++ + LRFD ++   +T  +L  IED + 
Sbjct: 575 RNLCANHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMY 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
            +I+ N PV++ + + +DA+A GA AL   KY +  VRVVS++       S  LC GTHV
Sbjct: 635 SLISGNNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIK------DSKELCCGTHV 688

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T EI    IVSE+SI  GIRRIEA+TG+ A  +   Q++ L S+A  +KV   NV+ +
Sbjct: 689 KYTSEIGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQ 748

Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           ++++ ++ ++L+   +     + N++ ++  KI +V+F+   +S +    ++  ++   K
Sbjct: 749 IDKLDKKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---K 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + +  I+L      +    ++ V   L  +  AVD  ++   ++    GGG   +AQ  
Sbjct: 806 HLTADRIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMVKS-KGGGNAQLAQIN 864

Query: 879 GPNGNKADQAIAGVASFL 896
           G    + D  ++ V S L
Sbjct: 865 GEYVKEID-IMSNVKSKL 881


>gi|326496549|dbj|BAJ94736.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 981

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/927 (35%), Positives = 497/927 (53%), Gaps = 71/927 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       T
Sbjct: 84  SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 142

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI+ AW+L TKE+ L  
Sbjct: 143 TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKDAIKWAWELTTKEYGLPP 198

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+++D+E F +W    G+  ++I R+  +DNFW+   TGPCGPCSE+++D    
Sbjct: 199 ERLWISVFEDDDETFSIWLNEVGVPKERIKRMGEDDNFWTSGATGPCGPCSEMYYDFHPE 258

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G L     +  R+IE +NLVFMQ+ + +      L + +IDTGMGLERMA +LQ   N
Sbjct: 259 -RGSLNADLNDDSRFIEFYNLVFMQYNKNDDGSLEPLKQKNIDTGMGLERMARILQNVPN 317

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +++ +  +  + Y   +     N +VI DH+R+  +LI+DG++P+N GRGY
Sbjct: 318 NYETDLIFPIMEKAASMALVSYSKADDAMRTNLKVIGDHMRAVVYLISDGVIPSNIGRGY 377

Query: 300 VLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G            ++  L   + +      P++   +  I   L
Sbjct: 378 VVRRLIRRVVRTGRLIGMRGDGHENSEGAVLPSLAETVISLSSEIDPDVESRRKSILGEL 437

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDIL 405
           + E+ RF +TL RG  LLD +L              L+G   F LYDT+G P++I  +I 
Sbjct: 438 QREELRFVQTLGRGEKLLDELLDEALGSAGDIGVPCLSGKDVFLLYDTYGFPIEITAEIA 497

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  ID+  F+  +E QR +++A    +      +    + +    T+F+GY+ L  
Sbjct: 498 SERGVT-IDMKGFDIEMENQRKQSQAAHNVIKLSVGNET--EIVKSIPDTEFLGYESL-- 552

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +++VK ++  G  VE    G  VE++ D+TPFYAE+G
Sbjct: 553 ---------------------FATAVVKGLLINGSPVENVSEGTDVEILLDRTPFYAESG 591

Query: 526 GQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           GQ+GD G               ++I DVQK    IFVH   +++G +     +   +D +
Sbjct: 592 GQVGDNGFLYVYEEEGGKQNAVIEIKDVQKSLGNIFVHKGTIKQGSIEVGKKIDAAVDGK 651

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+    +H+ATHLL  AL +++GS  SQ GS +  D LRFD +  +P+T  EL  IE  
Sbjct: 652 LRQGAKAHHTATHLLQSALKSVIGSETSQAGSLVAFDRLRFDFSFHRPLTEKELLEIESL 711

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I+    + T +M  +DA  +GA A+ G KY ++VRVV V        S  LCGGTH
Sbjct: 712 VNQWISDATHLETNVMALQDAKNAGATAMFGEKYGEQVRVVEVPG-----VSMELCGGTH 766

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           VS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV   +V  
Sbjct: 767 VSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCSRDNYMRHLCSSLKVKAEDVNS 826

Query: 759 RVEEIWEEYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
           RVE I EE R        L+   A  K           +  +V  +   + +VD+  LKS
Sbjct: 827 RVETILEELRTARNESSSLRSKIAVLKAASLASKAVLVEPHNVRILVENMGDVDADGLKS 886

Query: 812 VMDALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGG 869
             + L   +Q    +++G S  + K S++   +  ++     A       AK+ GGGGG 
Sbjct: 887 AAEHLVGTLQDPAAVILGSSPGDGKVSLVAAFSPGVVKMGVQAGKFVGGIAKLCGGGGG- 945

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
           G+P+ AQ+GG        A+    + +
Sbjct: 946 GKPNFAQAGGRKPENLPDALEKARAEI 972


>gi|213963758|ref|ZP_03392008.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213953638|gb|EEB64970.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 877

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/924 (36%), Positives = 486/924 (52%), Gaps = 76/924 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF+  GH ++PS+ ++  NDPTLMFTN+GM  FK  F G  KP ++ V
Sbjct: 1   MTSQEIRNLFLKFFESKGHTIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGHAKPKHKRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VGR   HHT FEMLGN+SFG YFK  AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEIYKIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+TV++  E        EAF +WK+   ++ D I+     DNFW M + GPCGPC+
Sbjct: 121 KENLYVTVFEGSEEDGVPFDQEAFDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCT 178

Query: 174 EIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI      D+ +    G    + +  + IEIWN VFM+F ++       LP  ++DTGMG
Sbjct: 179 EIHVDIRSDEEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHLR 280
            ER+  VLQ K +NYD D+F  LI   E++T   Y  N  V           RVI DH+R
Sbjct: 239 FERLCMVLQNKQSNYDTDVFTPLIHKVEEITKSHYNSNGRVTPEQEQVNIAIRVISDHIR 298

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +F IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+ +PE
Sbjct: 299 AVAFAIADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLAAQMGATFPE 358

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L + + LI   ++ E+  F +TL++GL++LD ++ +   D+ L+G  AF+LYDT+G P D
Sbjct: 359 LEKQQFLIMSVIKEEEASFLRTLEQGLLMLDVMIQN-SPDKQLSGGKAFELYDTYGFPKD 417

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   IL  +GL   D   F   L++Q+ R+RA +           W  L++     +FIG
Sbjct: 418 LTALILSEKGLTM-DEEGFEVQLQKQKERSRAAAQ-----VKTDDWVVLRDD-DEEEFIG 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           YD L     + + R+                           VE    G   ++VF+ TP
Sbjct: 471 YDTLEAVVRLVKYRR---------------------------VESQKDGTHFQLVFNTTP 503

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FY E GGQ+GD G        L      KK   + +H A  E             +    
Sbjct: 504 FYPEGGGQVGDKGTLQAANGELIYILDTKKENNLIIHIA--EHLPTELNDPFKAEVHLVA 561

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R     NHSATHLLH AL  +LG+HV Q GS + P+ LRFD +H   +TS ELK +E  V
Sbjct: 562 REMAEANHSATHLLHQALREVLGTHVEQKGSRVAPEALRFDFSHFAKLTSDELKEVERLV 621

Query: 640 NDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N  I + +P+     +  + A+ SGA AL G KY DRVR++          S  LCGGTH
Sbjct: 622 NKRIFEKIPLQEHRNIPIQQAVESGAMALFGEKYGDRVRMIQFG------DSKELCGGTH 675

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +TG+I    I+SE ++ AGIRRIEAIT   A  + + Q++ ++ +   +K +Q  V  
Sbjct: 676 VKNTGDIWFFKIISEGAVAAGIRRIEAITRGGAMQYFIEQEQLVERIKETVKNTQDPV-K 734

Query: 759 RVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMD 814
            +  + EE   L  +L   K++    ++     +  ++N +  +I +VD++   LK +  
Sbjct: 735 AITHLQEENAALHRELEQLKKEQAKQLKANLKAEFTEINAIQCLIKQVDAEVATLKDLAF 794

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRP 872
            L  +++   +      +E KA +L  + ++L      +A  + R   K + GGGG G+P
Sbjct: 795 ELGNEVKDAFVFFASAHEEGKALLLCYINKELAQAKGLDAGKIVRELGKYIHGGGG-GQP 853

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
             A +GG       +A+  V  FL
Sbjct: 854 FFATAGGKKPEGIAEALFKVKDFL 877


>gi|317014630|gb|ADU82066.1| alanyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 847

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/891 (36%), Positives = 491/891 (55%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +S D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VSVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++TG+ Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTGLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + ++       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     +
Sbjct: 458 -----AKVLGFFDSDFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDDEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERFEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A + G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKSRG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGVHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKILLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVSLVVGVVEQGD---IKEMIDRLKNKHERLLAMVFKKENE-RINLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|317124715|ref|YP_004098827.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
 gi|315588803|gb|ADU48100.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043]
          Length = 890

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/924 (35%), Positives = 506/924 (54%), Gaps = 64/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF+  GH ++PS+ L+  +DP L+F N+GMVPFK  F GQE P Y   
Sbjct: 1   METAEIRRRWLSFFESRGHTVVPSAPLV-HDDPNLLFVNAGMVPFKPYFLGQETPPYARA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE A+ LAW+L+T      
Sbjct: 60  TSVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAVALAWELVTTPQSQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D++ LY +VY ED+EA  +WK+++GL  D+I+R+   DN+W+M   GP GPCSEI 
Sbjct: 116 GYGFDEKDLYASVYHEDDEAIAIWKRVAGLPDDRIVRLGKKDNYWNMGVAGPGGPCSEIL 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230
            D+G           E G+RY+E WNLVFMQ +      + +      LPK +IDTGMGL
Sbjct: 176 IDRGPEFGADRD--WEAGDRYLEFWNLVFMQDDLSAVRAKDDFDIAGPLPKRNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I A+E+++G +Y  N  + V  RV+ DH+RS+  LI D
Sbjct: 234 ERVAYLLQGVDNLYEIDEVFPVIAAAEELSGRRYGANLEDDVRFRVVADHVRSALMLIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RRA+   RLLG   P + HLLP    +M ++YPEL +    I 
Sbjct: 294 GVTPGNEGRGYVLRRLIRRAVRSMRLLGVDAPTLEHLLPVSKDQMRASYPELERGFGRIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E++ F +TL  G  +LD  ++         L+G  AF+L+DT+G P+D+  ++  
Sbjct: 354 QVAYAEEDAFRRTLTAGTTILDVAVTKAKSSGSATLSGSEAFQLHDTYGFPIDLTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGYDLLR 464
            +GL  +D   F + + EQR RA+A +        +  ++  + +  G   +F GYD + 
Sbjct: 414 EQGL-NVDEAGFRRLMAEQRDRAKADARSKKMAHGDVSVYRQVADSLGRDVEFTGYDEVV 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    S V+ +++ GE+V  A +G+++EVV D+TP YAE+
Sbjct: 473 SD-----------------------SRVRGLIRGGELVSTAHAGEEIEVVLDRTPLYAES 509

Query: 525 GGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   + +G  +++ DVQK   G+ VH A V  G   T       +D   RR +
Sbjct: 510 GGQLADRGRIRLANGALIEVRDVQKPINGLIVHRATVLEGEAVTGDDAEAVVDVVRRRSV 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S  H+ATH++H AL   LG   +Q GS  +P  LRFD     P+    +  IE  VN ++
Sbjct: 570 SRAHTATHMVHQALREELGETATQAGSENSPGRLRFDFKAQSPVPLEAMADIEAKVNSVL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L V   +M+ ++A   GA AL G KY +RVRVVS+     G  S  LCGGTH    G
Sbjct: 630 LDDLAVTADVMSLDEARRMGALALFGEKYGERVRVVSI-----GDWSIELCGGTHALRVG 684

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ ++ ++ E+SI +G+RR+EA+ G  A +HL  +   +  L   LKV    +  R+  I
Sbjct: 685 QLGVVKLLGEASIGSGVRRVEALVGSDAYTHLAREAAIVGQLTDQLKVRTEELPQRIASI 744

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHII-SEVDSKELKSVMDALQ 817
             + ++ +   A  K    +            IA V F+SH     V + +L++++  ++
Sbjct: 745 LSKLKEAEKEIAAVKQAQVLGAAPGLVATARDIAGVTFVSHDAGDGVTADDLRALVLEVR 804

Query: 818 KKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           +++ +    ++ +  +S  +   ++            A    R +A+VLGGGGG G+  +
Sbjct: 805 RRLGTDRPSLVSMAAVSNGRPIVIVATNDRAREAGLKAGLFVRTAAQVLGGGGG-GKDDI 863

Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898
           AQ GG + +    A+  V   L +
Sbjct: 864 AQGGGTDASMVSAALGAVEQQLHQ 887


>gi|288803286|ref|ZP_06408720.1| tRNA ligase [Prevotella melaninogenica D18]
 gi|288334327|gb|EFC72768.1| tRNA ligase [Prevotella melaninogenica D18]
          Length = 887

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/935 (35%), Positives = 499/935 (53%), Gaps = 90/935 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+  GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
           T  QKC+R  GKHNDL+ VGR     HHT FEMLGN+SFG YFKE AI  A++ L     
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGNYFKEGAIDYAYEYLVDVLH 120

Query: 120 LDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD + LY+TV++ D        +EA   W+K      + I+    +DNFW M +TGPCGP
Sbjct: 121 LDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGP 178

Query: 172 CSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D + E     +PG    +++  + IEIWN+VFMQF ++       L    IDTG
Sbjct: 179 CSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTG 238

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVNH 272
           MG ER+  ++Q+K +NYD D+F  +I   E+++G KY     EG+N           +  
Sbjct: 239 MGFERLVRLMQDKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAM 298

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCT 331
           RV+ DHLR+ +F IADG LP+N   GYV+RRI+RRA+ YA   LG  E  M  LL  L  
Sbjct: 299 RVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVR 358

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFK 389
           EMG+AYPEL   + LI   ++ E++ F +TL++G++LL+G +  L       L+G  AF+
Sbjct: 359 EMGTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQLDGKEAFR 418

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           L+DT+G PLD+ + I    G   +D   FN+ +E+Q++RAR       +      W  L+
Sbjct: 419 LFDTYGFPLDLTELICAENGYT-VDEKQFNEEMEQQKARARNA-----AAVENGDWEVLR 472

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           E  G  +F+GYD       +   RKV  +K                              
Sbjct: 473 E--GEQEFVGYDYTEYECHILRYRKVTQKKNSF--------------------------- 503

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             E+V D TPFY E GGQ+GD G  + +   + I D  K+     VH  IV+      E 
Sbjct: 504 -YELVLDYTPFYGEMGGQVGDQGVLVSEDETISIIDT-KRENNQSVH--IVKELPKNLEA 559

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
             +  +D + R   + NH+ATHLL +AL  +LG H  Q GS ++PD LRFDV+H + IT 
Sbjct: 560 DFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITD 619

Query: 630 AELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            EL+ +E  VN++I ++ P+        E+A   GA AL G KY D+VRVV         
Sbjct: 620 EELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFGP----- 674

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGG H +STG I    IV ESS+ AG+RRIEA+TG+   + +   ++ L+ L S 
Sbjct: 675 -SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLRSM 733

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE 803
              +  ++   + +  EE   ++      + Q               +  V+ +  ++  
Sbjct: 734 FN-NAKDLKAVLTKFVEENDSIKKELESFRTQAVSRAAKNMVEHAETVNGVHVVKTVLP- 791

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAK 861
           +D    K ++  +++ +   ++ ++G   E +  + I++++D++     NA  + R +AK
Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYNLNAGKIIREAAK 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ GG GGG+PH AQ+GG N +    A+  V   +
Sbjct: 852 LIQGG-GGGQPHYAQAGGKNADGIRSAVDKVIELI 885


>gi|56416520|ref|YP_153594.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|81599193|sp|Q5PBJ0|SYA_ANAMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|56387752|gb|AAV86339.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 882

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/911 (40%), Positives = 518/911 (56%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G     +N + HRVI DH+R+++FLI++G+ P NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---DNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLEKEIGGLSPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + EQ++R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFNKGMGEQKARSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   
Sbjct: 467 ---------CCSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 GDGIR--------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           G             ++T  +K +  + +H   +  G+     ++   ID   R +L  NH
Sbjct: 518 GVSGVKNSGGANIAEVTYTRKASN-LHIHECTITSGVFNVGDTVDAAIDVDRRERLKANH 576

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N 
Sbjct: 577 SATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNK 636

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           PV+T   + E A+  GA AL G KY++   RVVS+        S  LCGGTHV  TG+I 
Sbjct: 637 PVLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIG 690

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E
Sbjct: 691 AFKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKE 750

Query: 767 YRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +L+        ++    +   +  A V         +    +   M + +K  +   I
Sbjct: 751 KLELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSARKAERG--I 808

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +  + + KA ++I V +       A +L +  A +   G GGG   +A+         
Sbjct: 809 FAIATAVDGKAVLIIGVGDTASKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNV 865

Query: 886 DQAIAGVASFL 896
            +A++ + + +
Sbjct: 866 QEALSTILNKV 876


>gi|269959066|ref|YP_003328855.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848897|gb|ACZ49541.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 882

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 517/911 (56%), Gaps = 56/911 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G     +N + HRVI DH+R+++FLI++G+LP NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---DNSIAHRVIADHIRAAAFLISEGLLPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL   +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLAKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             FN+ + EQ+ R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFNKGMGEQKERSRRHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   
Sbjct: 467 ---------CCSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 GDGIR--------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           G             ++T  +K +  + +H   +  G+     ++   ID   R +L  NH
Sbjct: 518 GVSGVNNSGGANIAEVTYTRKASN-LHIHECTITSGVFNVGDTVDAAIDVDRRERLKANH 576

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N 
Sbjct: 577 SATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNK 636

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           PV+T   + E A+  GA AL G KY++   RVVS+        S  LCGGTHV  TG+I 
Sbjct: 637 PVLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIG 690

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
              IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E
Sbjct: 691 AFKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKE 750

Query: 767 YRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
             +L+        ++    +   +  A V         +    +   M + +K  +   I
Sbjct: 751 KLELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSARKAERG--I 808

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
             +  + + KA ++I V +       A DL +  A +   G GGG   +A+         
Sbjct: 809 FAIATAVDGKAVLIIGVGDTASKVLGASDLVKTLADL--QGKGGGNAGLARVS-LEVGNV 865

Query: 886 DQAIAGVASFL 896
            +A++ + + +
Sbjct: 866 QEALSTILNKV 876


>gi|72383213|ref|YP_292568.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123620600|sp|Q46I13|SYA_PROMT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72003063|gb|AAZ58865.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
          Length = 886

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/909 (36%), Positives = 508/909 (55%), Gaps = 53/909 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++      T
Sbjct: 15  SGDEIRDAFINFFVQHNHKKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRAT 73

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ 
Sbjct: 74  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNP 129

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + + I+V+ ED EA ++WK++ G+ A++IIR+   DNFWS   TGPCGPCSE++FD    
Sbjct: 130 QNIVISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPE 189

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  K     L    IDTGMGLERMA +LQ+K+N
Sbjct: 190 L-GSDEIDLEDDSRFIEFYNLVFMQYNRDLKGNLEPLANCHIDTGMGLERMAQILQKKSN 248

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI A+  +  +KYE     N  + ++I DH R+ + LI DG+  +N GRGY
Sbjct: 249 NYETDLIFPLINAAALLAQIKYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGY 308

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RL+G  +P +  L       M +AYP+L++ K +I   L+ E+ RF 
Sbjct: 309 ILRRLIRRMIRHGRLVGIIQPFLPQLAEIAIELMKNAYPQLLEKKKIILNELKIEESRFL 368

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  + SH  + ++++G  AF+LYDT+G PL++ ++I   +G++ +DI  F 
Sbjct: 369 ETLERGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKGIS-VDINGFE 425

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + +QR RA+  S+ +       I   +   +  T+F GY+ L                
Sbjct: 426 NEMAKQRKRAKEASVSIDLTEEGSIEREIS-LFDDTRFEGYEKLET-------------- 470

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                    +S V  I +  E V++AV G  V+++ ++TPFYAE+GGQ+GD G      +
Sbjct: 471 ---------TSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGLITSQDL 521

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + +V+KK   IF+H  IV  G+L    S+ + +    R++ + NH+ATHLL  AL  
Sbjct: 522 EVSVENVRKKKN-IFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKL 580

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            + S VSQ GS ++   LRFD    KP+T  EL+ +E  +N  I ++  +  + M  ++A
Sbjct: 581 SIDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEARINQWINEDHLIQIKTMPIKEA 640

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +A+GA A+ G KY D VRVV V        S  LCGGTHV+ T ++    I++E+ I +G
Sbjct: 641 MAAGALAMFGEKYGDVVRVVDVPG-----ISMELCGGTHVTRTSQLGTFKIINETGIASG 695

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           IRRIEAI G     +   +D  +K L+   KV    +V RV  +  E +       K K 
Sbjct: 696 IRRIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKN 755

Query: 780 QLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-- 832
           +L +            +     +   +  VD   L+S   +L   +     ++ G     
Sbjct: 756 ELALAKALGLATYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQ 815

Query: 833 --EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             + K   +   + DL+ D  +A       AK+ GGGGG GRP++AQ+GG      D A+
Sbjct: 816 EIDNKLVFVAAFSPDLVSDGLHAGKFISGVAKMCGGGGG-GRPNLAQAGGSQPQSLDLAL 874

Query: 890 AGVASFLKK 898
                 L +
Sbjct: 875 EKANENLTQ 883


>gi|291390471|ref|XP_002711725.1| PREDICTED: alanyl-tRNA synthetase [Oryctolagus cuniculus]
          Length = 945

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/965 (32%), Positives = 474/965 (49%), Gaps = 99/965 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
               S IR  F++FF++N H  + SS  IP +DPTL+F N+GM  FK IF     P +  
Sbjct: 4   FLTASEIRQRFIDFFKRNEHTYVHSSGTIPLDDPTLLFANAGMNQFKPIFLNTIDPTHPM 63

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT
Sbjct: 64  AKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLT 123

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +EF +   RLY+T  D+                 KI+     DNFW M +TGPCGPCSEI
Sbjct: 124 QEFGIPIERLYVTYLDDT----------------KILPGNMKDNFWEMGDTGPCGPCSEI 167

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMGLER+ +
Sbjct: 168 HYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMGLERLVS 226

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLI 286
           VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R+ +  +
Sbjct: 227 VLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDVDGIDMAYRVLADHARTITVAL 286

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PEL +   
Sbjct: 287 ADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPD 346

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D+   I 
Sbjct: 347 MVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLIA 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +     L   
Sbjct: 407 EEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRAKGLEAT 458

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
               K + +         +     + V A+ ++   VEE  +GQ+  VV D+T FYAE G
Sbjct: 459 DDSPKYNYQA--DSSGSYVFESTVATVLALRREKMFVEEVSTGQECGVVLDKTCFYAEQG 516

Query: 526 GQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           GQ+ D G  +       D     + + Q +  G  +H   V  G LR    + L ID   
Sbjct: 517 GQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTV-YGSLRVGDQVRLFIDEPR 574

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  E+  
Sbjct: 575 RRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIA 633

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687
           N++IA   PV T+      A A  G  A+    Y D VRVVS+               G 
Sbjct: 634 NEMIAAAKPVYTQDCALAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSGPAGS 693

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA- 746
           + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   KSL+ 
Sbjct: 694 LTSVEFCGGTHLRNSSHAGDFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKSLSV 753

Query: 747 --SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             + +K       +V   + ++ E        +++K +L    + L+  ++DL     AD
Sbjct: 754 MEAKVKAQTAPNKDVQKEIADLGEALAAAVIPQWQKDELRETLKSLKKIMDDLDRASKAD 813

Query: 794 VN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           V                     +  + S   +K L   +   +        ML  +  E 
Sbjct: 814 VQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEA 873

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A+   
Sbjct: 874 GKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEALQLA 932

Query: 893 ASFLK 897
            SF +
Sbjct: 933 TSFAQ 937


>gi|239939940|ref|ZP_04691877.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 868

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/902 (36%), Positives = 495/902 (54%), Gaps = 62/902 (6%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PS+SLI  +DPTL+   +GMVPFK  F G+ KP    VT+VQKCVR      D++ VG+
Sbjct: 1   MPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSVQKCVRT----PDIEEVGK 55

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137
           T RH TFF+M GNFSFG YFKE AIQLAW+ LT       + LD  +L+ITVY +D+EA 
Sbjct: 56  TTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYGLDPEKLWITVYLDDDEAE 115

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
           ++W+   G+ A++I R+   DNFWSM   GPCGPCSEI +D+G    G   G +   ERY
Sbjct: 116 QIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDRGPEF-GVEGGPAVNDERY 174

Query: 198 IEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           +EIWNLVFMQ+E+     +        LP  +IDTG+GLER+A +LQ   N Y+ D  + 
Sbjct: 175 VEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERLAMILQGVQNMYETDTLRV 234

Query: 252 LIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           ++  + ++TG++Y   N   V+ RV+ DH+R+S  LI DG+ P NEGRGYVLRRIMRRA+
Sbjct: 235 VMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGDGVTPGNEGRGYVLRRIMRRAI 294

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              RLLG T  ++  L+  +   MG  YPELI  +  IE    +E+  F K L  G  +L
Sbjct: 295 RNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVALAEEAAFLKALKGGTNIL 354

Query: 370 DGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           +  ++       ++L GD AF L+DT G P+D+  ++   +GL+ +D   F + ++EQR 
Sbjct: 355 ETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQGLS-VDEDGFRRLMQEQRD 413

Query: 428 RARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
           +A+A +    +G  +   +  + +  GAT+F GY  L G                     
Sbjct: 414 KAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAG--------------------- 452

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITD 545
              S +  ++  G     A  G +VEVV D+TPFYAE GGQL DTG    D G  +++ D
Sbjct: 453 --ESTIVGLLVDGVPSPAATEGDEVEVVLDRTPFYAEGGGQLADTGRIRLDTGAVIEVRD 510

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK   G+ VH  +V+ G +     +  +ID   RR ++  HSATHL H AL   LG   
Sbjct: 511 VQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAHSATHLTHQALRDALGPTA 570

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS  +P   RFD      +    L  +E  +N+++++ L V   +M+ ++A   GA 
Sbjct: 571 AQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSRELDVQAEVMSIDEAKKQGAI 630

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           A  G KY +RVRVV++     G  S  LCGGTHV +T ++ L+ ++ ESSI +G+RRIEA
Sbjct: 631 AEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGLVKLLGESSIGSGVRRIEA 685

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNV 783
           + G  A + L  +   +  L   +K     +  ++  +  + +  +    K + +  L  
Sbjct: 686 LVGVDAYNFLAKEHTVVAQLQELVKGRPEELPEKIAGMLGKLKDAEKEIEKFRAEKVLAA 745

Query: 784 EDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKKIQSG--IIMLVGISKEKKAS 837
                    DV  ++ +  +V     + +L+ ++  ++ +IQ G   ++ +  +   +  
Sbjct: 746 AAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRGRIQGGRPAVVALFTTANGRPL 805

Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +I   E   +R   A DL R +AK LGGGGG G+P +AQ GG N      A+A V   +
Sbjct: 806 TVIATNEAARERGLKAGDLVRTAAKTLGGGGG-GKPDVAQGGGTNPAAIGDAVAAVERLV 864

Query: 897 KK 898
            +
Sbjct: 865 SE 866


>gi|227432461|ref|ZP_03914448.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351782|gb|EEJ42021.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 893

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/924 (36%), Positives = 492/924 (53%), Gaps = 68/924 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL+FF   GHE +PS +LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAEIRQMFLDFFASKGHEAVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNNPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEM+GNFS G YFKE+AI  AW+LLT  + + L
Sbjct: 65  NSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPEWYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY +D+EA K+W++ + L    I  +   DNFW + E GP GP SEIFFD+G
Sbjct: 121 DAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177

Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQE----RFILPKMSIDTGMGLE 231
                      E     E ERY+EIWNLVF QF              LP  +IDTGMGLE
Sbjct: 178 SSFQDLPDDDPEMYPGGENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNIDTGMGLE 237

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI----VNHRVIVDHLRSSSFLI 286
           R+ +V Q    N+D DLF  +IQ +E+++    Y+ +       + +VI DH+R+ +F I
Sbjct: 238 RVVSVFQNGRTNFDTDLFLPIIQDTERLSNQFTYDDSQDSEVNTSFKVIADHIRAITFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG LP+NEGRGYV+RR++RRA+ + + LG     + +L+P +   M S YPE+      
Sbjct: 298 GDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEVKANTAK 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           I++T+ +E++RF  TL  GL LL+ V+    K     ++G  AFKL DT+G PL++ Q+ 
Sbjct: 358 IQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGADAFKLSDTYGFPLELTQEQ 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D+  +N  L+ QR RARA      S   +     L +    ++++G+    
Sbjct: 418 AEDAGLI-VDVDGYNDELQAQRVRARAARSNTKSMGVQNAV--LTDLRVDSKYVGWSQTE 474

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS----GQKVEVVFDQTPF 520
            +                      + IV  I +  + V+  +        V+V FD TPF
Sbjct: 475 VNH---------------------AEIVAIIGEDEQGVDALLDNADVDATVQVAFDVTPF 513

Query: 521 YAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           Y+E GGQ+ D G  +     +   +TDVQ    G  +H   V          + L +D  
Sbjct: 514 YSEMGGQVPDFGDVLNTNGDVIAHVTDVQTAPNGQHIHTVDVISS-FTLGDKVDLKVDMV 572

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
               +S NH+ATH+L  +L  +LG  V Q GS + P+ LRFD  +  P++S +L  IE  
Sbjct: 573 RHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDKIESM 632

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +N  IA+NL V     + E A   GA A+ G KY D+VRVVS+     G  +    GGTH
Sbjct: 633 MNQEIAKNLSVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFDGGTH 687

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVV 757
            +ST E+ L  IVSES I AG+RRIEA+TG +A S    Q++ LK +A+ LK  +  +  
Sbjct: 688 ANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKLTDAP 747

Query: 758 GRVEEIWEEYRKLQL--IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSV 812
            +V ++  + R +Q      + KL         + +  VN  ++I +++       L+ V
Sbjct: 748 EKVYDLQADLRTVQRHAESLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGMDGLRQV 807

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            D  ++   S +++L  ++ EK + ++    +       A +L +  A  +GGGGG GRP
Sbjct: 808 ADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHIGGGGG-GRP 866

Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896
            MAQ+GG        A A V++FL
Sbjct: 867 DMAQAGGKKPAGIPDAFAAVSAFL 890


>gi|212696194|ref|ZP_03304322.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676823|gb|EEB36430.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 867

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/910 (34%), Positives = 499/910 (54%), Gaps = 72/910 (7%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT+  ++++
Sbjct: 66  SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTENLEINK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+++VY+ D+EA+K+W +  GLS D+I+R    DNFW + E GPCGP SEIF D+G  
Sbjct: 122 DLLWVSVYENDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVE 180

Query: 183 IP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                    PG +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ
Sbjct: 181 KAIDENDNKPG-NDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K N ++ID+ +++I+  E+++  KY+ N  + ++ RVI DH ++ +F+++DGI P+NE 
Sbjct: 240 NKDNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     +  ++  +       Y EL+  K  I   ++ E+ 
Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSVIDCVIDSYKDEYDELVDRKDKIISVIKKEEA 359

Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F  T+D GL +L+  +  L     + L+G  AFKLYDT+G PLD+ ++IL    L  +D
Sbjct: 360 NFQNTIDSGLDILNEYIKDLRDKNKDTLDGKEAFKLYDTYGFPLDLTKEILTENNLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ +E QR+ AR         + + I     +++  T+F+GYD L           
Sbjct: 419 TKEFDKQMENQRNLARNARKSDAGWSLDSINI---DEFDKTEFVGYDDLE---------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        V + +  +    E V     G K  V+ D+T FYAE GGQ+ DTG  
Sbjct: 466 -------------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLV 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I D  + ++ +VQKK E I +H+  V  G L         +D + R  ++ NH+ATHLL 
Sbjct: 513 ITDSAKAKVYNVQKKNE-IIIHYVEVIDGDLNL-AKADFIVDKERRLDITRNHTATHLLD 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  IL   V Q GS +  + LRFD T+   ++  E++ IE+ +N+ I Q L V   IM
Sbjct: 571 QALRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIRKIENEINEKIRQQLKVKKEIM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             +++   GA  L   KY D VRVVS+       +S  LCGG HV+++ E+++  I+ ES
Sbjct: 631 PYKESEKLGAIGLFEDKYKDMVRVVSI-----DDYSIELCGGCHVNNSSEVLMFKILQES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  +GIRRIEAITG++   +L      +  ++  LK +  N++ + E + EE + L+L  
Sbjct: 686 SAASGIRRIEAITGRKVYDYLNSNLGLINVVSKVLKTNPKNILSKAESLNEEIKNLKLDI 745

Query: 775 AKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            K K + N +D+             +  + H     D   L++  + +++K +  I++  
Sbjct: 746 QKLK-EFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV-------LGGGGGGGRPHMAQSGGPN 881
            ++ + K      V++ L +R+NA  + +  +K+                 + AQ+GG +
Sbjct: 805 TVNND-KIVFTASVSDSLTNRYNAGKIVKEVSKITGGNGGGKK--------NFAQAGGKD 855

Query: 882 GNKADQAIAG 891
            +K D+A+  
Sbjct: 856 ISKLDEALKK 865


>gi|83305847|sp|Q3YSV8|SYA_EHRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 887

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/908 (40%), Positives = 535/908 (58%), Gaps = 58/908 (6%)

Query: 1   MSNVS---SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M   +    IR  F++FF KNGH+L PSS LI  +DP+L+FTN+GMV FK++FT      
Sbjct: 1   MKESNLVGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNAN 60

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                + QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW  +TKE
Sbjct: 61  VGTAVSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKE 120

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             L++ +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM  TGPCGPCSEIF+
Sbjct: 121 LALNKDKLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFY 180

Query: 178 DQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GGLPG   E+G R+ EIWNLVFMQ+ +++  E   LPK  IDTGMGLER++ V
Sbjct: 181 DYGEDIEGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAV 240

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NYDI+LFK LI+ S++ +G     NN + HRVI DH+RS++FLIA+G+ P NEG
Sbjct: 241 MQGVHDNYDINLFKDLIKVSKKQSG---NTNNELAHRVIADHVRSAAFLIAEGLTPGNEG 297

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETL 351
           R Y+LRRI+RRA  Y  +L Y   LM  + P+L  E     M   YPELI AK LI   L
Sbjct: 298 RDYILRRIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISIL 357

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E F  TL + L LL+  L  L    +L GD+AFKLYDT+G P+DI  DI+  +G+ 
Sbjct: 358 KIEEENFKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK 417

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             D   F   +++Q+ R++  HS+        K+W  +KE YG T+F+GY          
Sbjct: 418 -FDEQGFYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGY---------- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                       +  +  + ++  I +  +  E A  G +V V+ D TPFYAE+GGQ GD
Sbjct: 467 ------------EQYSTRAKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKGD 514

Query: 531 TG----------CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           TG            +     +++ D +K  + +++H  +++ G L     +   ++ + R
Sbjct: 515 TGVFNVIVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEKR 574

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L  NHSATHLLH+ L +++   + Q GS ++ D LRFD ++   +T  +L  IED + 
Sbjct: 575 KNLCANHSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKMF 634

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
            +I  N PVVT I + ++AIA GA AL   KY D  VRV+++        S  LC GTHV
Sbjct: 635 SLIRNNSPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIG------DSKELCCGTHV 688

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TGEI    IVSE+S+  G+RRIEA+TGQ A  +   Q++ L  +A  +K    N++ +
Sbjct: 689 RYTGEIGCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILIQ 748

Query: 760 VEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           ++++    ++L+   +      +N++ ++  KI  ++F+   ++ V    ++  ++   +
Sbjct: 749 IDKLNRNNQELKQKLSDAYFSVINLQGIATDKIGSIDFLYSSLNSVPIDVVRKFIN---E 805

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + + +IM       +    +I V  +L  +  A D   +  +V+    GGG   +AQ  
Sbjct: 806 HLVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKS-KGGGNNQLAQIS 864

Query: 879 GPNGNKAD 886
           G    + D
Sbjct: 865 GEYIKEVD 872


>gi|73666779|ref|YP_302795.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake]
 gi|72393920|gb|AAZ68197.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake]
          Length = 891

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/908 (40%), Positives = 535/908 (58%), Gaps = 58/908 (6%)

Query: 1   MSNVS---SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
           M   +    IR  F++FF KNGH+L PSS LI  +DP+L+FTN+GMV FK++FT      
Sbjct: 5   MKESNLVGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNAN 64

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                + QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW  +TKE
Sbjct: 65  VGTAVSSQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKE 124

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             L++ +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM  TGPCGPCSEIF+
Sbjct: 125 LALNKDKLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFY 184

Query: 178 DQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D GE I GGLPG   E+G R+ EIWNLVFMQ+ +++  E   LPK  IDTGMGLER++ V
Sbjct: 185 DYGEDIEGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAV 244

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           +Q   +NYDI+LFK LI+ S++ +G     NN + HRVI DH+RS++FLIA+G+ P NEG
Sbjct: 245 MQGVHDNYDINLFKDLIKVSKKQSG---NTNNELAHRVIADHVRSAAFLIAEGLTPGNEG 301

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETL 351
           R Y+LRRI+RRA  Y  +L Y   LM  + P+L  E     M   YPELI AK LI   L
Sbjct: 302 RDYILRRIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISIL 361

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E F  TL + L LL+  L  L    +L GD+AFKLYDT+G P+DI  DI+  +G+ 
Sbjct: 362 KIEEENFKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK 421

Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             D   F   +++Q+ R++  HS+        K+W  +KE YG T+F+GY          
Sbjct: 422 -FDEQGFYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGY---------- 470

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                       +  +  + ++  I +  +  E A  G +V V+ D TPFYAE+GGQ GD
Sbjct: 471 ------------EQYSTRAKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKGD 518

Query: 531 TG----------CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           TG            +     +++ D +K  + +++H  +++ G L     +   ++ + R
Sbjct: 519 TGVFNVIVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEKR 578

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L  NHSATHLLH+ L +++   + Q GS ++ D LRFD ++   +T  +L  IED + 
Sbjct: 579 KNLCANHSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKMF 638

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHV 699
            +I  N PVVT I + ++AIA GA AL   KY D  VRV+++        S  LC GTHV
Sbjct: 639 SLIRNNSPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIG------DSKELCCGTHV 692

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TGEI    IVSE+S+  G+RRIEA+TGQ A  +   Q++ L  +A  +K    N++ +
Sbjct: 693 RYTGEIGCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILIQ 752

Query: 760 VEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           ++++    ++L+   +      +N++ ++  KI  ++F+   ++ V    ++  ++   +
Sbjct: 753 IDKLNRNNQELKQKLSDAYFSVINLQGIATDKIGSIDFLYSSLNSVPIDVVRKFIN---E 809

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            + + +IM       +    +I V  +L  +  A D   +  +V+    GGG   +AQ  
Sbjct: 810 HLVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKS-KGGGNNQLAQIS 868

Query: 879 GPNGNKAD 886
           G    + D
Sbjct: 869 GEYIKEVD 876


>gi|194386694|dbj|BAG61157.1| unnamed protein product [Homo sapiens]
          Length = 992

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/994 (31%), Positives = 478/994 (48%), Gaps = 114/994 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKK-------ISGLSADKIIRITTNDNFWS 162
           F +   RLY+T +  DE        E  ++W+           L   KI+     DNFW 
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGTYLYSFVRLDDTKILPGNMKDNFWE 185

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           M +TGPCGPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK 
Sbjct: 186 MGDTGPCGPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKK 244

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHR 273
           SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG +               + +R
Sbjct: 245 SIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYR 304

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332
           V+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+  A   L  +      L+  +   
Sbjct: 305 VLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRCAHEKLNASRGFFATLVDVVVQS 364

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           +G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYD
Sbjct: 365 LGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYD 424

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y
Sbjct: 425 TYGFPVDLTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---Y 476

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
              +     L       K +  +        +     + V A+ ++   VEE  +GQ+  
Sbjct: 477 AIEELRARGLEVTDDSPKYNYHL--DSSGSYVFENTVATVMALRREKMFVEEVSTGQECG 534

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           VV D+T FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+
Sbjct: 535 VVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLK 592

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    
Sbjct: 593 VGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGA 651

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--- 682
           +++ ++K  E+  N++I     V T+      A A  G  A+    Y D VRVVS+    
Sbjct: 652 MSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 711

Query: 683 --------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                      G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  
Sbjct: 712 SELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKT 771

Query: 735 LMGQDEKLKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQ 780
           L   +   K L+   + +K       +V   + ++ E        +++K +L    + L+
Sbjct: 772 LRKAESLKKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLK 831

Query: 781 LNVEDLSCHKIADVN-------------------FMSHIISEVDSK-------------- 807
             ++DL     ADV                     +  + S   +K              
Sbjct: 832 KVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKATQGPGSPPLGLIS 891

Query: 808 --ELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863
              L   +   +        ML  +  E  K + L  V ++  +R   A +  +  +  L
Sbjct: 892 SLALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-L 950

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG+   AQ+ G N     +A+    SF +
Sbjct: 951 MDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQ 984


>gi|149369737|ref|ZP_01889589.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49]
 gi|149357164|gb|EDM45719.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49]
          Length = 872

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/918 (36%), Positives = 483/918 (52%), Gaps = 70/918 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FLEFF+   H ++PS+ ++  +DPTLMF NSGM PFK  F G  +P    +
Sbjct: 1   MKANEIRAAFLEFFESKKHSIVPSAPMVLKDDPTLMFVNSGMAPFKEFFLGNAQPKNTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+   +D
Sbjct: 61  TDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKEEAIAWAWELLTEVLKID 120

Query: 122 QRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY+TV++  +         EA+ +WKK   ++ D+I++    DNFW M + GPCGPC
Sbjct: 121 KDMLYVTVFEGSDDADNLKMDTEAYDIWKKY--IAEDRILKGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + +EIWNLVFMQ+ ++      ILP   IDTGM
Sbjct: 179 SEIHVDIRSAEEKAAVDGKSLVNMDHPQVVEIWNLVFMQYNRKANGTLEILPNKHIDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ+  +NYD D+F  +I+  E +T  +Y  +    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQDVKSNYDTDVFTPIIREIETITDTEYGKDEKIDIAIRVISDHVRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L ++MG A+PE+   K 
Sbjct: 299 ADGQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVTVLVSKMGEAFPEIKSQKQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F +TLD+GLVLLD ++        ++G   F+L DT+G P D+   IL
Sbjct: 359 LIENVIKEEESSFLRTLDQGLVLLDRMIEGQKGSTEISGAKVFELKDTYGFPEDLTDLIL 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G        F Q L EQ++R +  S       T      +       +F+GYD L  
Sbjct: 419 REKGYTY-SKEEFEQKLAEQKARGKEASESKNDDWT------ILLDDAEEEFVGYDRLSA 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  +   RKV  +K                            G+  ++VF+ TPFY E G
Sbjct: 472 NVKLTRYRKVTSKK---------------------------DGEMYQLVFNLTPFYPEGG 504

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G     G  +      KK   + +H        L    +    +D  +R ++  
Sbjct: 505 GQVGDKGYVQAPGGDVLYILDTKKENNVIIHFTKNLPNNLT--ETFKAQVDENHRFRIEC 562

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH  L  ILG+HV Q GS +    LRFD +H   +T+ EL+ +ED VN  IA 
Sbjct: 563 NHSATHLLHQGLREILGTHVEQKGSSVHSKYLRFDFSHFSKVTAEELQEVEDFVNARIAG 622

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            L     R +  E+AIA GA AL G KY D VR V          S  LCGGTHV +T +
Sbjct: 623 RLDFEEKRAVPMEEAIAEGAMALFGEKYGDAVRTVRFG------QSIELCGGTHVKNTAD 676

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SES++ +G+RRIEAIT    ++H    D+    + S L  +    V  +E+I 
Sbjct: 677 IWHFKIKSESAVASGVRRIEAITNHALKNHFSDNDKAFSEVKSLLN-NTKKPVEAIEKIQ 735

Query: 765 EEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKI 820
            E  +L  Q+    +    N++    ++I ++N  + +  E  +D+  LK +   L  +I
Sbjct: 736 AENSELKKQIEQLLKDKAKNIKGDLKNQIVEINGANFLAKELDLDAGGLKDLAFELGGEI 795

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++ + +L G     KA +   + +DL      NA  + R   K + GGGG G+P  A +G
Sbjct: 796 EN-LFILFGSKAGGKALLTCYIDKDLAKEKDLNAGTIVRELGKHIQGGGG-GQPFFATAG 853

Query: 879 GPNGNKADQAIAGVASFL 896
           G N    ++A+  V +++
Sbjct: 854 GKNPEGIEKALEAVKAYI 871


>gi|297195516|ref|ZP_06912914.1| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152826|gb|EDY66040.2| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 854

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/889 (35%), Positives = 483/889 (54%), Gaps = 61/889 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L FF++ GH ++PS+SLI  +DPTL+   +GMVPFK  F G+ KP    V
Sbjct: 1   MESAEIRRRWLSFFEERGHTVVPSASLIA-DDPTLLLVPAGMVPFKPYFLGEVKPPAPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT      
Sbjct: 60  TSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L+  +L+ITVY ED+EA ++W+ + G+ A++I R+    NFWSM   GPCGPCSEI 
Sbjct: 116 GYGLEPEKLWITVYQEDDEAEQIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEIN 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
           +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +        LP  +IDTG+GL
Sbjct: 176 YDRGPEF-GEEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ D  + ++  + ++TG++Y  ++   V+ RV+ DH+R+S+ LI D
Sbjct: 235 ERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHGSDVSLRVVADHIRTSTMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRRIMRRA+   RL+G T P++  L+  +   MG  YPELI  +  IE
Sbjct: 295 GVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVKDLVDVVIDTMGLQYPELITDRKRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+  F K L  G  +LD  +  +      +L GD AF L+DT G P+D+  ++  
Sbjct: 355 TVALAEEAAFLKALKGGTNILDTAVTETKAKGGTVLPGDKAFLLHDTWGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F + ++EQR RA+A +    +G      +  + +  G T+F GY    G
Sbjct: 415 EQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHANLSAYREIADSSGNTEFTGYTSTEG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G     A  G +VEVV D+TPFYAE G
Sbjct: 474 -----------------------ESTVVGLLVDGVSSPAASEGDEVEVVLDRTPFYAEGG 510

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G   +  G  +Q+ DVQ+   G+ VH  +V+ G +    S    ID + RR ++
Sbjct: 511 GQLADQGRIKLHSGAVIQVRDVQQPVPGVSVHKGVVQVGEVTVGASAYAVIDVRRRRAIA 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++A
Sbjct: 571 RAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINEVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + L V   +M+ ++A   GA A  G KY +RVRVV++     G  S  LCGGTHV +T +
Sbjct: 631 RELDVHAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  + 
Sbjct: 686 LGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVKGRSEELPEKIAAML 745

Query: 765 EEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSH----IISEVDSKELKSVMDALQK 818
            + +  +    K + +              DV  ++     +     + +L+ ++  ++ 
Sbjct: 746 GKLKDAEKEIEKFRAEKVLGAAAGLAQGAKDVRGVALVTGTVPDGTSADDLRKLVLDVRG 805

Query: 819 KIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLG 864
           +I      ++ V  +   +   +I   E   +R   A DL R +AK LG
Sbjct: 806 RIPGDRPAVVAVFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTLG 854


>gi|170039921|ref|XP_001847766.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167863508|gb|EDS26891.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 967

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/970 (31%), Positives = 470/970 (48%), Gaps = 91/970 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               IR  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TAKQIRNIFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSK 65

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT  
Sbjct: 66  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDR 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L   RLY+T +        + D E   +W K+ G+  + I+  +  DNFW M ETGPC
Sbjct: 126 LKLPSDRLYVTYFGGHPESGLEPDLECRDIWLKL-GVKEEHILPGSMKDNFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  ID GMG
Sbjct: 185 GPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L QA ++ TG                 + +RV+ DH R
Sbjct: 244 YERLVSVIQDKRSNYDTDVFVPLFQAIQKGTGAPDYQGRVGAEDVDGVDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFATLVDTVVELLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 364 VKKDPQHIKNIINEEEQQFLKTLSRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   +   + +  ID+  + +A    + ++   S G     T  +   +   +  ++   
Sbjct: 424 LTGLMAEEKNMT-IDMEGYEKA----KHQSYIISQGKEKSKTATVDLDV---HAISELQE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKP-PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
             +   +   K   K     P    +    +  V A+      V+E  +GQ+  V+ D+T
Sbjct: 476 KKVPTTNDTFKYHYKAESTDPLAAYVFEPCTGKVLALRYNNAFVDEVQAGQECAVILDKT 535

Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            FYAE+GGQ+ D G  +    +     +  V     G  +H  +VE G+LR    +   +
Sbjct: 536 NFYAESGGQIYDQGYLLKVNDESTEFNVNLV-YNRGGYVLHIGVVE-GVLRVGDEVACHM 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   
Sbjct: 594 DVVRRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKAAMTIEQVAEA 653

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEY 683
           E    +++ +N+ V  +      A A  G  ++    Y D VRV+S            E 
Sbjct: 654 ERLTREVVKKNMQVYAKESKLASAKAIKGLRSVFDEVYPDPVRVISFGVPVEDLEANPEG 713

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G   S   CGGTH+  +G ++   I +E +I  GIRRI A+TG  A   L  + E L+
Sbjct: 714 VAGTETSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEAIKAL-KKTELLE 772

Query: 744 SLASFLKVSQG---------NVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDL 786
              + LK +             V ++ E+ E+         +K ++ +  + L+  ++D 
Sbjct: 773 GELNALKATIDADKTGADSREHVKKIVELNEDVSQAVIPYVKKDEIRNQLKSLKKTLDDK 832

Query: 787 S------------------CHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIML 827
                              C    D  F+ H +    ++K L S +  ++K       + 
Sbjct: 833 ERAARAAVATTVVEAAKELCAANKDAPFIVHRLEAFSNTKALDSALKEVRKLNVEQSALF 892

Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           V    + KK   L  V +  +++   A +     +  + GG GGG+P  AQ+ G   +K 
Sbjct: 893 VSSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM-GGKGGGKPESAQASGGAFDKV 951

Query: 886 DQAIAGVASF 895
           ++ +    +F
Sbjct: 952 EEILELARAF 961


>gi|222474888|ref|YP_002563303.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida]
 gi|255002859|ref|ZP_05277823.1| alanyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico]
 gi|222419024|gb|ACM49047.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida]
          Length = 882

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/910 (40%), Positives = 517/910 (56%), Gaps = 54/910 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT G      +  
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L 
Sbjct: 65  VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE
Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184

Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
            + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLER A V+Q  
Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +NYD DLFK +I+ S+ V G     NN + HRVI DH+R+++FLI++G+ P NEGR YV
Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355
           LRRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE 
Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D 
Sbjct: 362 EGFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F++ + EQ+ R+R H +G G   + ++W  L+ ++  T+F+GYD              
Sbjct: 421 EGFDKGMGEQKERSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V +I + G  V+   SG++  ++ D +PFYAE+GGQ GD G   
Sbjct: 467 ---------CCSTKASVLSITRDGMAVQSVNSGERACLLLDVSPFYAESGGQEGDKGSIT 517

Query: 536 G-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           G        G+ +      +KA  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 518 GVSGVNNSGGVNIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKP 637

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY++   RVVS+        S  LCGGTHV  TG+I  
Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 691

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E 
Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 751

Query: 768 RKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L+        ++    +   +  A V         +    +   M + +K  +   I 
Sbjct: 752 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSARKAERG--IF 809

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + + KA ++I V +       A +L +  A +   G GGG   +A+          
Sbjct: 810 AIATAVDGKAVLIIGVGDTASKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 866

Query: 887 QAIAGVASFL 896
           +A++ + + +
Sbjct: 867 EALSTILNKV 876


>gi|163840721|ref|YP_001625126.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|205830238|sp|A9WSC4|SYA_RENSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|162954197|gb|ABY23712.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 896

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/928 (35%), Positives = 482/928 (51%), Gaps = 68/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +L+FF   GH ++PS+SLI   DP+++F  +GMVPF    +G+EK  Y   
Sbjct: 1   MKTQDIAQRWLDFFAAKGHTVVPSASLISA-DPSILFNIAGMVPFVPYLSGREKAPYDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCIRTA----DIDEVGKTVRHGTFFQMCGNFSFGDYFKEGAITFAWELLTSSIADG 115

Query: 118 -FDLDQRRLYITVY----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + LD  RL+ TVY    ++DEEA  +W+   G+  ++I      DNFWS  + GP GPC
Sbjct: 116 GYGLDPSRLWATVYVDGTEKDEEARAIWRDKIGIPEERIQGTGKADNFWSTGQPGPGGPC 175

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDT 226
           SEI++D G    G   G   +  RYIEIWNLVFMQ++    + +        LP  +IDT
Sbjct: 176 SEIYYDLGAKY-GQEGGPIVDETRYIEIWNLVFMQYQLSAVRSKTDFDIAGDLPNRNIDT 234

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVD 277
           G+GLER+A +LQ   N Y+ D  + ++ A+ ++ G  Y            + V  RV+ D
Sbjct: 235 GLGLERLAMILQGVENLYETDQVRPVLDAAAELAGKDYTSTVDPADPHHADDVRLRVVAD 294

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+RS+  LIADG+ P+NEGRGYVLRR++RRA+   RL+G  +P +  LLP     M   Y
Sbjct: 295 HIRSALMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLMGVEKPCLPALLPVSREAMKGFY 354

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGL 396
           P + +    I     +E++ F +T+  G   LD  ++    K++ L+G  AF L+DT+G 
Sbjct: 355 PAVEEDFERISRIAYAEEKSFLRTIASGTARLDEAVTESKAKNQPLSGAEAFALHDTYGF 414

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+  ++    GLA +D   F   + EQR RA+A S    SG  +   F+     G T 
Sbjct: 415 PIDLTLEMAAEAGLA-VDETGFRALMLEQRQRAQADSREKKSGHADLSAFNELLAQGQTV 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GY  L G                        S ++ ++  G+ + +A  GQ++E+V  
Sbjct: 474 FTGYSELDG-----------------------ESAIRGLLSGGQPIAKASQGQEIELVLA 510

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +TPFYAEAGGQ  DTG   GDG  +++ DVQ+  + + VH AIV  G +    S+   +D
Sbjct: 511 ETPFYAEAGGQAADTGLISGDGFVIEVLDVQRPVKDLSVHKAIVREGEVAIGASVRAAVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R      H+ TH++H AL  ILG    Q GS      LRFD    + +++A    IE
Sbjct: 571 RERRHAAEQAHTGTHIVHAALHQILGPEALQRGSFNKAGYLRFDFAWGEGLSTATRSEIE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           +  N  I  N  V T  M  ++A A GA AL G  Y  RVRVV ++    G  S  LCGG
Sbjct: 631 EVANIAIRNNYSVQTTEMPIDEAKALGAMALFGENYGSRVRVVEID----GAWSRELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV +T  I  L ++ E S+  G RR+EA  G  A  HL  +   +  L   +KV    +
Sbjct: 687 THVDTTSRIGSLTLLGEQSVGYGNRRVEAFVGMDAFRHLAAERALVSELTEIMKVPSTQL 746

Query: 757 VGRVEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEV-DSKELK 810
             R+     + R  +       K +L     +L     ++     ++H + ++  + EL+
Sbjct: 747 ADRIGATLAKLRATEKELDRLRKAQLTAAAGELTTKAQQVGKTRLLTHDVGQIGGADELR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           S+   L++++ S   ++ L G S ++   ++            A  L +L+A VLGGGGG
Sbjct: 807 SLALDLRERLGSEAAVVALTGESNDRPMVLVATNEAARAAGVKAGALVKLAAGVLGGGGG 866

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G+  +AQ GG N  +   A+A +   +
Sbjct: 867 -GKDDVAQGGGSNVGQIPAALAAINQAV 893


>gi|146421805|ref|XP_001486846.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146387967|gb|EDK36125.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 964

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/966 (32%), Positives = 489/966 (50%), Gaps = 96/966 (9%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            S +R+TFL++F +K+GH+ +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 22  ASKVRSTFLDYFKEKHGHQFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASEMST 81

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           ++     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI+ AW+LLT  
Sbjct: 82  WKRAVNSQKCIRAGGKHNDLEDVGQDSYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTDV 141

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++ DE        EA + W    G++ D I+     DNFW M + GPC
Sbjct: 142 YKLDPDRLYVTYFEGDEKLGLGPDLEAKQFWLD-RGVAEDHILTGDAKDNFWEMGDQGPC 200

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVFMQ+ ++       LP   IDTG+G
Sbjct: 201 GPCSEIHYDRIGNRNAAH-LVNMDDPNVLEIWNLVFMQYNREPDSSLRPLPAKHIDTGLG 259

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ+K++NYD D+F+ +     +++G++                 +RVI DH+R
Sbjct: 260 FERLVSILQQKSSNYDTDVFQPIFDKIREISGVRPYTGKFGSEDKDGIDTAYRVIADHVR 319

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+P +  +    +P
Sbjct: 320 TLTFAITDGGVPNNEGRGYVLRRILRRGARYVRKYLNCPIGSFFQQLVPVVIEQNSEIFP 379

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+++    ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 380 EILRNMQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 439

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A  E    ++A S                   G++Q
Sbjct: 440 PVDLTRLMAAEAGLK-IDEEGFEKARLESWEASKASSNK-----------------GSSQ 481

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
            +  D+   S+                  + V + V  I      V+     GQ+V ++ 
Sbjct: 482 LVKLDVHALSELDSNANIPKTNDSYKYGLDDVKAEVVGIYDGSSFVDSVSEVGQQVGILL 541

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  D G  + DG    ++ +VQ    G  +H   +  G L+ +  ++  
Sbjct: 542 DKTSFYAEQGGQEYDKGKIVIDGSAEFEVDNVQ-VYGGYVLHTGSIVYGTLKVKDEVLAC 600

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +T AEL  
Sbjct: 601 YDELRRWPIRNNHTGTHVLNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQGLTPAELTK 660

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVE 682
           +E   N  I+ N  V  + +   DA   +G  A+ G  Y D VR           +   +
Sbjct: 661 VEAISNKYISDNKEVFAKDVPLADAQQINGLRAVFGETYPDPVRVVSVGVPVEDLLKDPK 720

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
            ++    S   CGGTHV+ TGEI  L I+ ES I  GIRRI A+TG  A           
Sbjct: 721 RDEWHQVSVEFCGGTHVAKTGEIKDLVIIEESGIAKGIRRIVAVTGTEAHRVQKLAKDYD 780

Query: 737 -------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLI 773
                         +++K K L   +K    +V+ +           + I ++ +  Q  
Sbjct: 781 SQLSEAEAMPFGSSKEQKTKELGVAIKKLSISVLDKQMLNTKFTKLDKSIKDQLKAKQKE 840

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +K+ L+     L+    +D  F+SHI    ++K +   ++ ++K+  S  I L   S  
Sbjct: 841 ESKKVLEAVNNWLTSEDSSDY-FVSHIDISANAKAITDAINLIKKEHNSKTIYLFAGS-- 897

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +    V++D + +  N+ DLA L++  + GG  GG+ ++ Q  G   +  ++A+  +
Sbjct: 898 DKVAHGCYVSDDAISKGVNSNDLAALASTSI-GGKAGGKGNVVQGMGDKPSGIEKAVEDI 956

Query: 893 ASFLKK 898
            + L K
Sbjct: 957 TAALSK 962


>gi|313471497|sp|B8B4H5|SYAP_ORYSI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags:
           Precursor
 gi|218197887|gb|EEC80314.1| hypothetical protein OsI_22356 [Oryza sativa Indica Group]
          Length = 996

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/926 (34%), Positives = 497/926 (53%), Gaps = 70/926 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       T
Sbjct: 100 SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 158

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI  AW+L TKEF L  
Sbjct: 159 TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPP 214

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+ +D+EAF +W    G+  ++I R+  +DNFW+   TGPCGPCSEI++D    
Sbjct: 215 ERLWISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYDFYPE 274

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  N
Sbjct: 275 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 333

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGY
Sbjct: 334 NYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGY 393

Query: 300 VLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G             +  L     +      P++   +  I   L
Sbjct: 394 VVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGEL 453

Query: 352 RSEDERFGKTLDRGLV-------LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + E+ RF +TL+RG                + G    L+G   F LYDT+G P++I  +I
Sbjct: 454 QREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEI 513

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+  +D+  F+  +E QR +++A    +      +    + +    T+F+GYD L 
Sbjct: 514 AGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGYDSL- 569

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +++VK ++  G  V     G  VE+  D+TPFYAE+
Sbjct: 570 ----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPFYAES 607

Query: 525 GGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           GGQ+GD G     G         ++I DVQK    IFVH   +++G +     +   +D 
Sbjct: 608 GGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDAAVDA 667

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R+    +H+ATHLL  AL +I+GS  SQ GS +  D LRFD    +P++  EL  IE 
Sbjct: 668 KLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELMKIES 727

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  ++    + T++M+ +DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 728 LVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 782

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV   +V 
Sbjct: 783 HVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKAEDVN 842

Query: 758 GRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSV 812
           GRVE I EE R  + ++   + K+ +       +K   ++    ++    +VD+  LKS 
Sbjct: 843 GRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADGLKSA 902

Query: 813 MDALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            + L   ++    +++G S  + K S++   +  ++     A       AK+ GGGGG G
Sbjct: 903 AEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIAKLCGGGGG-G 961

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P+ AQ+GG        A+      +
Sbjct: 962 KPNFAQAGGRKPENLPGALEKARDEI 987


>gi|87123480|ref|ZP_01079331.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917]
 gi|86169200|gb|EAQ70456.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917]
          Length = 911

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/894 (38%), Positives = 498/894 (55%), Gaps = 56/894 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL F+++ GH+ + S+SL+P  DPT++ T +GM+PFK +F GQ++      T+ Q
Sbjct: 38  QIREAFLAFYEQRGHQRIASASLVP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSSQ 96

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L  + L
Sbjct: 97  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSPKNL 152

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ ED+E   +W+   G++  +IIR+   DNFW+   TGPCGPCSEI++D    + G
Sbjct: 153 VVSVFREDDEGEAIWRDRVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-G 211

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+  R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ   NNY+
Sbjct: 212 DDGIDLEDDSRFIEFYNLVFMQYNRDAEGTLTPLENRNIDTGMGLERMAQILQAVPNNYE 271

Query: 246 IDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   LI+ + Q+ G+ Y   +G    + +VI DH R+ + LI DG+  +N GRGY+LR
Sbjct: 272 TDLIYPLIETAAQLAGVAYPALDGKGKTSLKVIGDHSRAITQLIGDGVTASNLGRGYILR 331

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG  +P +  +  A    M SAYP+L++ + +I   L+ E+ RF +TL
Sbjct: 332 RLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERREVILAELQREEARFLETL 391

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  VL+   K + ++G  AF+LYDT+G PL++ ++I    GL  +D+  F  A+
Sbjct: 392 ERGEKLLADVLA--AKPKQISGAQAFELYDTYGFPLELTEEIAEEHGLT-VDLDGFEAAM 448

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           E QR RA+A ++ +     E I   +     AT F GY+LL  S                
Sbjct: 449 EAQRQRAKAAAVSIDLTLQEAIDQ-VAADLEATAFRGYELLEQS---------------- 491

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---- 538
                  S V A+V  GE  + AV+G  V+VV D TPFY E GGQ+GD G   GDG    
Sbjct: 492 -------SCVVALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDGPDGH 544

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +   +   +   +FVH   +ERG+L     +   +D   RR+   NH+ATHLL  AL 
Sbjct: 545 GLIVAIEAVSRNRSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAALK 604

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            ++   + Q GS +  D LRFD    + +T+AEL+ IE  +N  I++   +  + M  E 
Sbjct: 605 QVVDPGIGQAGSLVDFDRLRFDFHCPRAVTAAELEQIEALINGWISEAHSLEVQEMAIET 664

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A A+GA A+ G KY D VRVV          S  LCGGTHV++T EI L  IVSES + A
Sbjct: 665 AKAAGAVAMFGEKYADVVRVVD-----VPGVSMELCGGTHVANTAEIGLFKIVSESGVAA 719

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           GIRRIEA+ G    ++L  +D  +K L    K     +V RV ++ +E +  Q      +
Sbjct: 720 GIRRIEAVAGPAVLAYLNERDAVVKQLGERFKAQPAEIVDRVVQLADELKASQKALVAAR 779

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L +            +     +   +  V+   L+S    L  ++  G  +++G   +
Sbjct: 780 EELALAKSAALAGQAVAVGAHQLLVARLDGVEGGGLQSAAQGLVDQLGDGAAVVLGGLPD 839

Query: 834 ----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
                K  ++    + ++ R   A       AKV GGGGG GRP++AQ+GG +G
Sbjct: 840 PGDLGKVILVAAFGKAVISRGQQAGKFIGGIAKVCGGGGG-GRPNLAQAGGRDG 892


>gi|254779785|ref|YP_003057891.1| alanyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254001697|emb|CAX29926.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Helicobacter
           pylori B38]
          Length = 847

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/891 (36%), Positives = 486/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++    G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKTSWKGKQNNAD---FSAILNAYAPNEFVGYETTECP----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + ++       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     +
Sbjct: 458 -----AKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLLKDNEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K + + EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNNEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839


>gi|254430394|ref|ZP_05044097.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197624847|gb|EDY37406.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 907

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/925 (36%), Positives = 497/925 (53%), Gaps = 69/925 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR+ FL F+++ GH  +PS+SL+P +DPT++ T +GM+PFK +F GQ +      T
Sbjct: 18  SGADIRSAFLAFYEQRGHRRMPSASLVP-DDPTVLLTIAGMLPFKPVFLGQAERPAPRAT 76

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L  
Sbjct: 77  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSP 132

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L ++V+ ED EA  +W+++ G++  +IIR+   DNFW+   TGPCGPCSEI++D    
Sbjct: 133 ANLVVSVFREDHEAEAIWREVVGVNPRRIIRMDEADNFWASGPTGPCGPCSEIYYDFRPE 192

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQ+ +  +     L   SIDTGMGLERMA +LQ   N
Sbjct: 193 L-GDDGIDLEDDSRFIEFYNLVFMQYNRDAEGSLTPLANRSIDTGMGLERMAQILQGVPN 251

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y   E     + +VI DH R+ + LI DG+  +N GRGY
Sbjct: 252 NYETDLIYPLIETAAALAGVDYRQLEQKGQTSLKVIGDHSRAITQLIGDGVSASNLGRGY 311

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG   P +  +  A   +M  AYP+L + + +I   L  E+ RF 
Sbjct: 312 ILRRLLRRVVRHGRLLGIDRPFLKTMGEAAIAQMRQAYPQLDERRTVILAELEREEGRFL 371

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VL+       ++GD AF+LYDT+G PL++ Q+I   +GL  +D+  F 
Sbjct: 372 ETLERGEKLLADVLA--TGPRQISGDQAFELYDTYGFPLELTQEIAEEQGLT-VDLEGFE 428

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A ++ +     E I  ++     AT F GY+ L                
Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAID-AVAADLEATAFRGYEALEHP------------- 474

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     S V A+V  GE  E A +G  V++V D TPFY E GGQ+GD G  +G G 
Sbjct: 475 ----------SCVLALVVNGEPAERAAAGDAVQIVLDSTPFYGEGGGQVGDRGVLLGGGD 524

Query: 540 RLQI-------TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
           +  +        +   +   +FVH   VERG L     +   +D   RR+   NH+ATHL
Sbjct: 525 QTAVDAGVIVSIEAVSRNRSVFVHSGRVERGALAVGDLVTARVDGACRRRAQANHTATHL 584

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  ++   + Q GS +  D LRFD    + +T  EL+ IE  +N  I++   +V  
Sbjct: 585 LQAALKQVVDPDIGQAGSLVDFDRLRFDFHCPRAVTPEELERIEALINAWISEGHALVVE 644

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            M  + A A+GA A+ G KY + VRVV          S  LCGGTHV++T EI +  IV+
Sbjct: 645 EMAIDQARAAGAVAMFGEKYGEVVRVVD-----VPGVSMELCGGTHVANTAEIGVFKIVA 699

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES + AGIRRIEA+ G    S+L  +D  +K+L    K   G +V RV  + ++ +  Q 
Sbjct: 700 ESGVAAGIRRIEAVAGPAVLSYLQERDAVVKALGDRFKAQPGEIVERVTALQDDLKASQK 759

Query: 773 IHAKRKLQLNVEDLSC---------------HKIADVNFMSHIISEVDSKELKSVMDALQ 817
             A  + +L +   +                        +   +  V+   L++    L 
Sbjct: 760 ALASARQELALARSAALVTQAEAVGAAAAGDGGGEPFQLLVARLDGVEGAALQNAAQELV 819

Query: 818 KKIQSGIIMLVGISKE----KKASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRP 872
            ++ +   +++G   +     K  ++      L+     A       AK  GGGGG GRP
Sbjct: 820 DQLGATAAVVLGGLPDPTDLGKVVLVAAFGAALVAAGQKAGPFIGAVAKACGGGGG-GRP 878

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
           ++AQ+GG NG   D A+      L+
Sbjct: 879 NLAQAGGRNGAALDGALEQARQSLR 903


>gi|169154547|emb|CAQ13591.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS)
           [Danio rerio]
          Length = 963

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/967 (32%), Positives = 474/967 (49%), Gaps = 87/967 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +   Y   +   
Sbjct: 424 LTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI---YAIDELRN 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K                 V A+ ++   V+E ++GQ+  V+ D+T 
Sbjct: 476 KGVAATDDSPKY--KYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLLDKTS 533

Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ  D G  +   D          +   G  +H   V  G L+    L L +D 
Sbjct: 534 FYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTV-YGTLKVGDRLTLHVDE 592

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++  E+
Sbjct: 593 ARRRPIMSNHTATHILNYGLRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTDEVRRTEE 651

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YED 685
               +IA    V         A A  G  A+    Y D VRVVS+               
Sbjct: 652 IAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADPNSPA 711

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK---L 742
           G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D     L
Sbjct: 712 GSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADALKLSL 771

Query: 743 KSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +LA  +K         Q  +    E +      ++RK ++  + + L+  ++DL     
Sbjct: 772 DALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLDRASK 831

Query: 792 ADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           ADV                     +  + S   +K L   +  L+        ML  +  
Sbjct: 832 ADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLFTVDN 891

Query: 833 E-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N     +A+ 
Sbjct: 892 DAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQEALQ 950

Query: 891 GVASFLK 897
             + F +
Sbjct: 951 LASEFAR 957


>gi|308184987|ref|YP_003929120.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308060907|gb|ADO02803.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 847

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/891 (36%), Positives = 486/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  ++I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
               ++ ++       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     +
Sbjct: 456 ---CLAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDNEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGL 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELERVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   K+  V+ +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPIEKVHGVSLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|256832583|ref|YP_003161310.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686114|gb|ACV09007.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 895

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/921 (36%), Positives = 503/921 (54%), Gaps = 64/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF+   H ++PS+SLI   DP+++FT +GMVPF     G++K  +   
Sbjct: 1   MRTAEIRHRWLQFFESRDHHVVPSASLISP-DPSVLFTIAGMVPFIPYMLGEQKAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKC+R G    D+D VG+T RH TFF+M GNFSFG YFK  AI  AW+ +T      
Sbjct: 60  TSVQKCIRTG----DIDEVGKTTRHGTFFQMNGNFSFGDYFKREAITFAWEFITGSEESG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D   +++TVY +D+EA  LW+ ++GL  ++I R    DNFW   + GP GPCSEI+
Sbjct: 116 CLGFDPELIWVTVYHDDDEAASLWRDVAGLPEERIQRRGKKDNFWHTGQPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   + +RY+EIWNLVFMQ+  +N   +        L + +IDTGMGL
Sbjct: 176 VDRGPQY-GAEGGPVVDEDRYLEIWNLVFMQYSLENVTSKESFDIVGPLRQHNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID    +I+A+E+++G  Y  N  + V  RV+ DH+RSS  LI D
Sbjct: 235 ERVALLKQGVNNMYEIDEVYPVIEAAEKLSGRTYGENNDDDVRFRVVADHIRSSLMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   RLLG TEP +  L+ A    M ++YP L +    I 
Sbjct: 295 GVRPSNEGRGYVLRRLLRRSIRAMRLLGVTEPAIPALITASKEAMKASYPYLEENFATIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDI 404
            T  +E++ F +TL++GL +LD  +S           L G+ AF L+DT+G P+D+  ++
Sbjct: 355 ATASTEEDVFRRTLNQGLTILDAAVSDAKSQGGSSAALTGEQAFTLHDTYGFPIDLTLEV 414

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDL 462
              +G++ +D  +F   ++EQR RARA +L    G  +  ++ SL     A  +F+GY  
Sbjct: 415 AAEQGVS-VDETAFRSLMQEQRDRARADALAKKQGHGDLGVYQSLLASMAAPVEFLGY-- 471

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V A++  G+ V    +   VE+V D+TPFYA
Sbjct: 472 ---------------------TDAQAPAKVTALLVDGQPVATVTAPADVEIVLDRTPFYA 510

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQL D G    + G  + I DVQ    G+ VH   +  G L    ++V  ID   RR
Sbjct: 511 EKGGQLADHGRVYSEQGATVDIADVQSPVSGLSVHRGALVDGTLSVSDAVVAEIDVVRRR 570

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q+S  H+ATH++H AL   LG+  +Q GS  +P+ +RFD   S+ + ++ L  IE  VND
Sbjct: 571 QISQAHTATHMIHKALQETLGADSTQAGSENSPNRIRFDFRQSQAVPTSALAEIEGRVND 630

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + +NL V   + + +DA A GA AL G KY DRVRVVS+    GG  S  LC GTHV +
Sbjct: 631 QLRENLEVTDIVTSLDDARAMGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVPT 686

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           +GE+ ++ I+ E+SI +G+RR++A+ G  A  H   +   +  L+  L V    +  RVE
Sbjct: 687 SGELGIVTILGEASIGSGVRRVDALVGAGAYGHHARERALVSQLSGLLNVRSEELPTRVE 746

Query: 762 EIWEEYRKLQLI-----HAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDA 815
            +  + R  +        A+   +      S   +  V  +++   EV     L++++  
Sbjct: 747 SLVGKLRDAEKELTTLRQAQLLARAGEIASSAATVGAVRVVTYDAGEVATPDALRTLVLD 806

Query: 816 LQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
           ++ ++      ++ + G+SK +   V+            A  L R +A VLGGGGG G+ 
Sbjct: 807 VRGRLGDSQGSVVAVAGVSKGRPVVVIATNASAREAGVKAGALVRTAAGVLGGGGG-GKD 865

Query: 873 HMAQSGGPNGNKADQAIAGVA 893
            +AQ GG N     +A+A V+
Sbjct: 866 DLAQGGGQNPTAITEALAAVS 886


>gi|62185445|ref|YP_220230.1| alanyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|81312406|sp|Q5L512|SYA_CHLAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|62148512|emb|CAH64283.1| putative alanyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 875

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/898 (36%), Positives = 495/898 (55%), Gaps = 49/898 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H ++ SS + P NDP+++FTN+GM  FK+IF  +E   Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  R+Y TV+++D+EAF LW++   L +++I R+T  DNFWSMAETGPCG CSE+ FD+G
Sbjct: 120 DPDRIYATVHEKDDEAFALWEQ--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    EGER++E WNLVFM+F +  +     LP   +DTG GLER+ +++  
Sbjct: 178 ESFGTATSPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISG 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ + LI  +E ++G KY  +  +    RVI DH+RS SF I DG++P N  R
Sbjct: 238 TNTVFEADVLRLLISKTETLSGEKYHADEPLGAAFRVIADHVRSLSFAIVDGLIPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RR++ Y + LG+T+P +  ++PAL   MG AYPEL  +   I+E +  E+E 
Sbjct: 298 GYVLRKILRRSVNYGKRLGFTQPFLAEIVPALVDAMGEAYPELRLSVSQIQEVMTIEEEN 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           + K+L RG  LL  VL        ++G+ AFKL DT+GLPLD +  +      + +D+ +
Sbjct: 358 YFKSLHRGGNLLQQVLKSSSSSSTISGEDAFKLKDTYGLPLDEIALLAKDYNFS-VDLDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F Q  +E + R+R + +      T+ ++ +L     +T F+GY  L    F         
Sbjct: 417 FYQLEKEAKERSRKNVIKS-HNATDTVYDALSLGENST-FVGYHDLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++AI++ GE V      +K  ++  +TPFYAE GGQ+GD+G     
Sbjct: 466 --------------IEAIIKNGEQVSYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCS 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ +HH  V +G L +  ++   +    R+ +S NH+  HLLH AL
Sbjct: 512 DGTFIVSHTTSPKAGMVIHHGEVSQGQLHSAQAVTAQVHCLRRKNISNNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH K I   +L SIE  VN+ I +N  V TR     
Sbjct: 572 EMTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAAYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D + S       G KY+D VRVVS         S  LCGGTH   TG++    I+ E ++
Sbjct: 632 DVMNSKEIKQFFGDKYSDVVRVVSAG------FSHELCGGTHADFTGDLGYFRILKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA+TG+ A       ++ L  +A  L+  +  ++ +++ I +E ++   + + 
Sbjct: 686 ATGIRRIEAVTGKEAEVLARQDNQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISD 745

Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L    L      C +I DV++  + + E +S  L+   + L +KI   ++ L    
Sbjct: 746 LENKLIYSLLDKVIDRCQQIEDVSYFIYHLPESESHRLQQYANCLHQKIPVRLVSLWTTQ 805

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           K  K  +   +++DL+     A DL ++      GG  GG+   AQ      +   QA
Sbjct: 806 KNGKYIIFSRISDDLVKQGLKAKDLLQVLLTPC-GGRWGGKDIFAQGS---ADSLPQA 859


>gi|262038170|ref|ZP_06011567.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747818|gb|EEY35260.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 870

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/911 (35%), Positives = 521/911 (57%), Gaps = 62/911 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  ++ +
Sbjct: 1   MTGNELRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   LD
Sbjct: 60  TTYQKCIRT----NDLENVGKTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
           + RL+++V++ D+EA+K+W +  G+ A++++R+  +DN+W+    G CGPCSEI++D   
Sbjct: 116 KERLWVSVFETDDEAYKIWNEEIGVPAERMVRLGEDDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          +EG+R++EIWNLVF ++ +        LP+ +IDTG G+ER+A+V+Q
Sbjct: 176 MGKNNEEINCKPGDEGDRFLEIWNLVFTEWNRLEDGTLVPLPEKNIDTGAGIERIASVIQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K +N++ DLF  +I+  E+V  +K E  +    +VI DH+R+S FLI DG+LP+NEGRG
Sbjct: 236 NKKSNFETDLFMPIIKGIEKVLDIKKE-EHDEAVKVIADHIRASVFLIGDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+LR+I+RRA         ++    +  +  L+  +   M   YP+L++    IE+ ++ 
Sbjct: 295 YILRKIIRRAFGVGSVAKEKVFEKEDIFLHKLVSYVVETMKDGYPDLVEKSEYIEKVIKI 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEIL--NGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF  TL  G  +L   ++ L K      + +++FKLYDT G P ++ + IL   G+ 
Sbjct: 355 EEERFSTTLKNGTEMLSEEIAKLKKQNKKKLSSEISFKLYDTFGFPFELTKLILNNEGIE 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +    F + LEEQ +R++   + +     +       EK+G T+F GY+       +  
Sbjct: 415 -VSEEDFEKRLEEQITRSQRSRVTISDMIKDDFIDEFFEKHGKTEFTGYENFADKGKILY 473

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
             K                             E +SG   E++FD+TPFYAE+GGQ+ DT
Sbjct: 474 AAK----------------------------SEGMSG--YEMIFDKTPFYAESGGQVSDT 503

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE-MSLVLTIDYQNRRQLSINHSAT 590
           G         +      K   +F+H   V +GI+  E  ++ L ID + R+ +  NH+AT
Sbjct: 504 GKITAGEFEGR-VVDVVKKRDVFIHQVEVIKGIIPAENTTVELEIDVERRKDIQRNHTAT 562

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+LH  L   LG+HV Q+GS +  D LRFD +H +PI+   ++ IE  VN++I  N+   
Sbjct: 563 HILHKVLREKLGTHVEQSGSLVESDRLRFDFSHYEPISKEMIEEIEYEVNNVILSNIKTK 622

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               N ++A   GA AL   KY D VRVV +        S  LCGG HV STGEI    I
Sbjct: 623 IDYENIQEAKNRGAMALFSDKYGDIVRVVEIPG-----FSIELCGGAHVKSTGEIGFFNI 677

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE+ I +G+RRI A TG ++  ++ G +EKL  +++ +K  + N+V  +++   E++ L
Sbjct: 678 ESETGISSGVRRIIATTGHKSLEYVNGIEEKLAEISATMKSDENNIVEVLKKYKNEFKDL 737

Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  + + + +L   +++       +I+ V  ++      +  ELK ++D  ++K+QSGII
Sbjct: 738 EKAYMQLQSRLLKYEINEIFEGVEEISGVKVLAKTFENKNIDELKEIVDRGKEKLQSGII 797

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L   S  +KA  +  VT+DL+ +  A D+ +++A+    G GGGRP  AQ+GG NG+  
Sbjct: 798 IL--GSNNEKAIFVAGVTKDLISKIKAGDIVKVAAQT-ADGNGGGRPDFAQAGGKNGSAV 854

Query: 886 DQAIAGVASFL 896
            +A+     ++
Sbjct: 855 KEAVEKSKEYI 865


>gi|269795075|ref|YP_003314530.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
 gi|269097260|gb|ACZ21696.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542]
          Length = 895

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/923 (34%), Positives = 496/923 (53%), Gaps = 65/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F+  GH ++PS+SL+   DP+ +FT +GMVPF    TGQ+   ++  
Sbjct: 1   MRTAEIRQRWLTYFEDRGHTVVPSASLVSP-DPSTLFTIAGMVPFIPYMTGQQTAPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AWD +T      
Sbjct: 60  TSVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEEAIAYAWDFITGSVDDG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +   D   +++TV+ ED+EA ++WK+++GL+ ++I      DNFWS    GP GPCSEI+
Sbjct: 116 KLGFDPELVWVTVFHEDDEAREIWKRVAGLTDERIQSRGMRDNFWSTGARGPAGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK------MSIDTGMGL 230
            D+G    G   G   + +RYIEIWNLVFMQFE+ +   +   P        +IDTGMGL
Sbjct: 176 IDRGPEY-GAEGGPVVDEDRYIEIWNLVFMQFERADGGTKDDFPILGPLASRNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+ +++++G  Y     + V  RV+ DH+RS+  LI D
Sbjct: 235 ERVAFLLQGVDNMYEIDEVFPVIEVAQRLSGKTYGAVEADDVRMRVVADHIRSAVMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GI P+NEGRGYVLRR++RR++   RLLG  EP +  L+PA    M ++YPEL +    I 
Sbjct: 295 GIRPSNEGRGYVLRRLIRRSVRAMRLLGVEEPALPALVPASIEVMKASYPELGEGSDRIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQD 403
               +E+E F +TL  G  +L+  +            +L G  AF+L+DT+G P+D+  +
Sbjct: 355 SIALAEEEAFRRTLTAGTTILETAVGSALSTSGPGKAVLGGAEAFQLHDTYGFPIDLTLE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQFIGYD 461
           +    G+  +D  +F   ++EQR+RARA +L   SG  +K  +   +       +F+GY 
Sbjct: 415 MASEHGVT-VDETAFRTLMQEQRTRARADALAKRSGGADKAAYEALQTGLGAPVEFLGY- 472

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                       S +  ++  G     A +   VEV+ D+TPFY
Sbjct: 473 ----------------------TDTTARSTIVGLIVDGVPGPVATAPATVEVILDRTPFY 510

Query: 522 AEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AEAGGQL D G  + DG   +++ DVQ   +G+ VH   V  G++    S   TID   R
Sbjct: 511 AEAGGQLADQGTIVLDGGGTIEVDDVQAPIKGLSVHRGRVVDGVVTMGESGTATIDTARR 570

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + +S  HSATH++H AL   LG   +Q GS   P  +RFD   S+ + +  L  IE+ VN
Sbjct: 571 KAISRAHSATHMIHKALQESLGKDATQAGSENAPSRIRFDFRSSQAVPTGALAEIEERVN 630

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +A++L V  ++MN ++A A GA AL G KY DRVRVVS+    GG  S  LC GTHV 
Sbjct: 631 TQLAEDLEVTEQVMNIDEARALGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVK 686

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            +G++ L+ ++ E+SI +G+RR++A+ G  A      +   +  L   L V    +  R+
Sbjct: 687 RSGQLGLVTLLGEASIGSGVRRVDALVGDGAYGFQAKEHALVGQLTGMLNVRTEELPDRI 746

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEV-DSKELKSVMD 814
             +    ++ +   A  +    +            + D   ++H   EV  + +L+++  
Sbjct: 747 GGLITRLKEAEKELAAVRQGQLLAAAGQLAASAEMVGDARVVTHDAGEVASADDLRALAL 806

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
            ++ ++      ++ + G+SK++   V++           A    + ++ VLGGGGG G+
Sbjct: 807 DVRGRLGESAPTVVAVAGVSKDRPLVVVVTNATARERGLKAGAFVKAASGVLGGGGG-GK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVAS 894
             MAQ GG +      A+AG+  
Sbjct: 866 DDMAQGGGQDVTAVPAALAGLRD 888


>gi|332044324|gb|EGI80518.1| alanyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 871

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/922 (35%), Positives = 483/922 (52%), Gaps = 76/922 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR+TFL FF+K  H ++PS+ ++  +DPTLMF N+GMVPFK  F G  +P    
Sbjct: 1   MKS-QDIRSTFLNFFEKKKHSIVPSAPMVLKDDPTLMFVNAGMVPFKEYFLGNSEPKNTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +
Sbjct: 60  LTDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKI 119

Query: 121 DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D+  LY+TV++  E         EA+ +WK+   +S D+I++    DNFW M E GPCGP
Sbjct: 120 DKDILYVTVFEGSEDSDKLDMDTEAYDIWKQY--ISEDRILKGNKKDNFWEMGEQGPCGP 177

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D    + +    G    + +  + +EIWNLVFMQ+ ++       LP   IDTG
Sbjct: 178 CSEIHVDIRSAEEKAKVNGKDLVNMDHPQVVEIWNLVFMQYNRKANGSLEGLPNKHIDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFL 285
           MG ER+  VLQ   +NYD D+F  +I+  E +T  +Y  N    +  RVI DH+R+ +F 
Sbjct: 238 MGFERLCMVLQNVQSNYDTDVFTPIIREIETITDKEYNKNEKTDIAIRVISDHVRAVAFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K
Sbjct: 298 IADGQLPSNTGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVDVLSDKMGEAFPELKTQK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LIE  ++ E+  F +TLD+GL+LLD ++      E+L G   F+L DT+G P D+   I
Sbjct: 358 QLIENVIKEEETSFLRTLDQGLLLLDRIIETTKGKEVL-GAKVFELKDTYGFPEDLTDLI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +G    ++  FN  LE+Q+SR R  S           W +L E     +FIGYD L 
Sbjct: 417 LREKGYTY-NVEEFNAELEKQKSRGRESS-----ALKSDDWTTLVED-AEQEFIGYDALE 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  +   RKV  +K                            G+  ++VF+ TPFYAE 
Sbjct: 470 ANVKITRYRKVTSKK---------------------------DGEMYQLVFNLTPFYAEG 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G        +      KK   + +H A  +        +    +D + R +  
Sbjct: 503 GGQVGDKGYLEDAHGDVVYILDTKKENNVIIHFA--KNLPKHLNETFKAVVDAKQRYRTE 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH  L  +LG+HV Q GS +    LRFD +H   +T+ +L+ +ED VN  I 
Sbjct: 561 CNHTATHLLHQGLREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTNEQLQEVEDFVNRRID 620

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             L +     +  + AI  GA AL G KY D VR +          S  LCGGTHV +T 
Sbjct: 621 GKLELEENRNVPMDQAIEDGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVKNTS 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    IVSE ++ +GIRRIEAIT    +       +    + S L  +  +    + ++
Sbjct: 675 DIWHFKIVSEGAVASGIRRIEAITSDAVKDFYAENSKVFSEMKSLLN-NAKDPKEALVKL 733

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCH------KIADVNFMSHIISEVDSKELKSVMDALQ 817
             E   L+       L+   ++L         +I  V F++  + ++D+  +K V   L 
Sbjct: 734 QTENNDLKKQIESL-LKDKAKNLKAELENNLTEINGVQFLAEKV-DLDASGIKDVAFDLG 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +K ++ + ++ G     KA +   ++++L+     NA  + R   K++ GGGG G+P  A
Sbjct: 792 QKHKN-LFLIFGADTGGKALLTCYISKELVAEKGLNAGTVVRELGKLIQGGGG-GQPFFA 849

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N     +A+     +++
Sbjct: 850 TAGGKNPEGIQEALNEAKKYIQ 871


>gi|269123200|ref|YP_003305777.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314526|gb|ACZ00900.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 865

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/912 (35%), Positives = 520/912 (57%), Gaps = 65/912 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R +F+EFF+   H+   S+SLIP +D TL+ T +GMVPFK+ F G++K  Y  +
Sbjct: 1   MTGNELRKSFIEFFKSKEHKHFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKKAPYNRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVG T RHHTFFEMLGNFSFG YFK  +I+ +W+ +T+   LD
Sbjct: 60  TTYQKCIRT----NDLENVGVTPRHHTFFEMLGNFSFGDYFKRESIKWSWEYITEILKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
             RLY++VY  D+EA+ +W K  G+  D ++R+  +DN+W+  E G CGPCSEI++D   
Sbjct: 116 PNRLYVSVYLTDDEAYDIWTKEVGVPEDHMVRLGDDDNWWAAGEIGSCGPCSEIYYDTQI 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            GE          +EG R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q
Sbjct: 176 MGENNEEINSKPGDEGNRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            K+NN++ DLF  +I+  ++V  +K E     + ++I DHL++S+FLI DG+LP+NEGRG
Sbjct: 236 NKSNNFETDLFIPIIENIKEVLSIK-EEEISTSVKIIADHLKASTFLICDGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           Y+L++++RRA          +   +   + +++ ++   M  AY EL + +  I+  ++S
Sbjct: 295 YILKKLIRRAYGAGAIENREIFNKSLTFLHNIVDSIIDNMKEAYIELDEKREYIKNIIKS 354

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+++F +TL  G  +L   +     + I  L  DV+FKLYDT+G P +  + I       
Sbjct: 355 EEDKFSRTLKSGTEILFEEIKKCKSENISKLPSDVSFKLYDTYGFPFEFTRLI-VENNKM 413

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +    FNQ LEEQ  R++   +       ++      ++ G T F GYD L       +
Sbjct: 414 IVSEDEFNQKLEEQVKRSQDSRVKNSDMIKDEFIDKFYKENGKTLFTGYDTLN------D 467

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           + KVL  K                          +  +  EV+F++TPFYAE GGQ+ D 
Sbjct: 468 EAKVLHIKN-------------------------LENELYEVIFNRTPFYAEGGGQIADK 502

Query: 532 GCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G    D   + ++ DV KK++ +F+H+   E   L+ ++  +L +D + R  +  NH+AT
Sbjct: 503 GVIKYDNKVIAEVKDVIKKSD-VFIHYISGEE--LKFDIEYILEVDKKRRNDIKKNHTAT 559

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH  L  +LGS V Q GS ++ DGLRFD ++ + ++  ++  IE+ VN++I +NLPV 
Sbjct: 560 HLLHKVLKDVLGSAVEQAGSLVSDDGLRFDFSYYEQVSQEQVNIIENKVNELILENLPVY 619

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
               N  DA+  GA AL   KY D VRV+ +        S  LCGGTHVSSTGEI L  I
Sbjct: 620 INYENINDAVKKGAMALFSDKYGDVVRVIDISG-----VSLELCGGTHVSSTGEIGLFKI 674

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
            SE    +GIRRIEA TG ++  ++   ++ ++ +++  K S  N++  + +  EE +  
Sbjct: 675 KSEQGKASGIRRIEATTGYKSLEYVHNLEKDIQDISNKFKTSPVNLIPAINKYREEVKVQ 734

Query: 771 Q---LIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +       +R ++  + DL+     I  V  +     + D  ELK ++D  ++ ++S +I
Sbjct: 735 ENTIKELQRRLVKFEINDLTNEAIDINGVKVLVKSFKDKDVNELKDLVDRAKEILKSCVI 794

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +    S  +KA  +  VT+DL+++++A ++ + +A  +  G GGGRP  AQ+GG +GNK 
Sbjct: 795 LF--GSNNEKAIFVSGVTKDLINKYHAGNIVKNAA-TIADGNGGGRPDFAQAGGKDGNKV 851

Query: 886 DQAIAGVASFLK 897
            +A+     ++K
Sbjct: 852 KEALEKTLEYIK 863


>gi|94734006|emb|CAK04587.1| alanyl-tRNA synthetase [Danio rerio]
          Length = 966

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/971 (32%), Positives = 479/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+   + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +   Y   +   
Sbjct: 424 LTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI---YAIDELRN 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K                 V A+ ++   V+E ++GQ+  V+ D+T 
Sbjct: 476 KGVAATDDSPKY--KYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLLDKTS 533

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ  D G  + +       +   + + Q +  G  +H   V  G L+    L L
Sbjct: 534 FYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVR-GGYVLHIGTV-YGTLKVGDRLTL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++
Sbjct: 592 HVDEARRRPIMSNHTATHILNYGLRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTDEVR 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+    +IA    V         A A  G  A+    Y D VRVVS+           
Sbjct: 651 RTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D  
Sbjct: 711 NSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADAL 770

Query: 742 ---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLS 787
              L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++DL 
Sbjct: 771 KLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +  L+        ML 
Sbjct: 831 RASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQ 949

Query: 887 QAIAGVASFLK 897
           +A+   + F +
Sbjct: 950 EALQLASEFAR 960


>gi|118763839|gb|AAI28795.1| Aars protein [Danio rerio]
          Length = 966

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/971 (32%), Positives = 478/971 (49%), Gaps = 92/971 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +   Y   +   
Sbjct: 424 LTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI---YAIDELRN 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K                 V A+ ++   V+E ++GQ+  V+ D+T 
Sbjct: 476 KGVAATDDSPKY--KYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLLDKTS 533

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ  D G  + +       +   + + Q +  G  +H   V  G L+    L L
Sbjct: 534 FYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVR-GGYVLHIGTV-YGTLKVGDRLTL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++
Sbjct: 592 HVDEARRRPIMSNHTATHILNYGLRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTDEVR 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+    +IA    V         A A  G  A+    Y D VRVVS+           
Sbjct: 651 RTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+      D  
Sbjct: 711 NSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAQRKADAL 770

Query: 742 ---LKSLASFLKVS-------QGNVVGRVEEI----WEEYRKLQLIHAKRKLQLNVEDLS 787
              L +LA  +K         Q  +    E +      ++RK ++  + + L+  ++DL 
Sbjct: 771 KLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLKKIMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               ADV                     +  + S   +K L   +  L+        ML 
Sbjct: 831 RASKADVQKRVLEKTKEIIESNPNQPLIVMEMESGASAKALNESLKMLKTNSPQTAAMLF 890

Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  +  K   L  V +D+ +R   A +  +    +L  G GGG+   AQ+ G N     
Sbjct: 891 TVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATGRNTQCIQ 949

Query: 887 QAIAGVASFLK 897
           +A+   + F +
Sbjct: 950 EALQLASEFAR 960


>gi|108563608|ref|YP_627924.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|122386244|sp|Q1CS22|SYA_HELPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|107837381|gb|ABF85250.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 847

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/891 (37%), Positives = 485/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG    P     T+ 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPHPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G         + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQDNAD---FSAILNAYAPNEFVGYETTECP----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G    D     I
Sbjct: 458 -----AKALGFFDSDFKEIIEANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFGEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839


>gi|332170337|gb|AEE19592.1| alanyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 870

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/928 (35%), Positives = 484/928 (52%), Gaps = 91/928 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  FL+FF+   H ++PS+ ++  +DPTLMFTN+GMVPFK  F G   P    
Sbjct: 1   MKS-QEVRKQFLDFFESKKHTIVPSAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNAR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           ++  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT+   +
Sbjct: 60  LSDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKI 119

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+  LY++V++         D+EAF +WK+   +  D+II     DNFW M   GPCGPC
Sbjct: 120 DKDSLYVSVFEGDKEDGLDRDQEAFDIWKQ--RIDEDRIIDGNKKDNFWEMGAQGPCGPC 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +    +EIWNLVFMQ+ +        LP   +DTGM
Sbjct: 178 SEIHVDIRSAEEKAKVDGKTLINMDHPHVVEIWNLVFMQYNRLADGSLVKLPNQHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  L+   E +T  K   +  ++   RVI DH+R+ SF I
Sbjct: 238 GFERLCMVLQGVQSNYDTDVFTPLMSEIETITNSKCGNDEEIDIAVRVIADHVRAVSFSI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K 
Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLDMKEPFIYKLVATLVKQMGDAFPELKSQKN 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L+   +R E+  F +TLD+GL+LLD V++    D + +GD AF+LYDT+G P+D+   IL
Sbjct: 358 LMTNVIREEEASFLRTLDKGLLLLDNVIADTKGDTV-SGDKAFELYDTYGFPIDLTALIL 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             + L  +D   F  AL+EQ+ R+RA +        E   +++  +    +F+GYD L  
Sbjct: 417 SEKNLK-LDEKGFEAALKEQKDRSRAATK------VETDDWNILHEDAEEEFVGYDTLET 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RK   +K                            G+  ++VF+ TPFY E G
Sbjct: 470 PVKITRYRKTESKK---------------------------DGELYQLVFNLTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK   + +H A  +     T+ +    +D + R + ++
Sbjct: 503 GQVGDKGYLETPNGEVVYIIDTKKENNLIIHLA--KNLPRSTDGTFKAVVDAKQRSRTAV 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH  L  +LG+HV Q GS +    LRFD  H   +T  ELK +ED VN  I +
Sbjct: 561 NHTATHLLHQGLRKVLGTHVEQKGSMVHSGNLRFDFAHFSRVTKEELKEVEDFVNARIRE 620

Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           NL +  +  +  + A+  GA AL G KY D VR +          S  LCGGTHV +TG+
Sbjct: 621 NLSLEEQRGIPYDQAVQEGAIALFGEKYGDAVRTIRFGK------SMELCGGTHVKNTGD 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SE ++ +GIRRIEAIT   A+ +   + E    + + LK +Q  V   +  + 
Sbjct: 675 IWHFKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPV-KAITSLL 733

Query: 765 EEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E   L+       K K Q    DL+     I  V+F++  + ++D+  +K +   L  +
Sbjct: 734 DENAALKKQVEALIKEKAQNLSGDLAKEFTDIDGVDFLAKKV-DLDAGAIKDLAFKL-GE 791

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR------ 871
            +  + +L    +E KA +   ++++L+   + NA  + R            G+      
Sbjct: 792 NKDNVFILFATEQEGKALLSCYISKELVASKQLNAGTVVREL----------GKHIQGGG 841

Query: 872 ---PHMAQSGGPNGNKADQAIAGVASFL 896
              P  A +GG N    D AIA V ++L
Sbjct: 842 GGQPFFATAGGKNPAGIDAAIAEVKNYL 869


>gi|238883003|gb|EEQ46641.1| alanyl-tRNA synthetase [Candida albicans WO-1]
          Length = 969

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/965 (31%), Positives = 470/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F+K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 25  TASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 85  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA   W K+ G+  D I+  +  DNFW M + GPC
Sbjct: 145 YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVEDNFWEMGDQGPC 203

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 204 GPCSEIHYDRIGGRNASA-LVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 263 FERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++      G                   
Sbjct: 443 PVDLTRLMAEEAGLK-IDEEGFERAKEESREASKGSGTKDGK-----------------T 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
            +  D+   S+  + D               V + V  I    + V+       +  ++ 
Sbjct: 485 LVKLDVHALSELDQNDAIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPSIQYGILL 544

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQ  DTG  + DG     + +VQ    G  +H   +  G L     ++ T
Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQ-VYAGYVLHTGNIVDGKLNVGDEIIAT 603

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +T+ EL+ 
Sbjct: 604 YDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAVTAKELEK 663

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV----- 688
           IE   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+      +     
Sbjct: 664 IEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPT 723

Query: 689 ------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----------- 731
                  S   CGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A           
Sbjct: 724 NTKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQKVANEFE 783

Query: 732 --------RSHLMGQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLI 773
                       + ++ K K L   LK    +V+ +           + I +  +  Q  
Sbjct: 784 QEIDNASSLPFGVAKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKAKQKE 843

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K+ L +    L+  + A    ++H+    ++K +   ++ ++K+ ++  I L+    +
Sbjct: 844 ETKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSIYLLTGETD 903

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K A    V  E ++   NA +LA+  ++ + GG  GG+ ++ Q  G      + AI  V 
Sbjct: 904 KVAHGCYVSDEAIVKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGINTAIEEVT 962

Query: 894 SFLKK 898
              K+
Sbjct: 963 KLFKE 967


>gi|120434599|ref|YP_860290.1| alanyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|205830059|sp|A0LXX3|SYA_GRAFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|117576749|emb|CAL65218.1| alanyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 871

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/922 (36%), Positives = 492/922 (53%), Gaps = 76/922 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FLEFF+   H ++PS+ ++  +DPTLMFTN+GMV FK  F G        
Sbjct: 1   MKS-QDIRKQFLEFFKSKSHTIVPSAPMVLKDDPTLMFTNAGMVQFKEFFLGNSVAKSNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + +
Sbjct: 60  VTDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWELLTEVYKI 119

Query: 121 DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
               LY++V++  +         EA +LWKKI  +  ++II     DNFW M + GPCGP
Sbjct: 120 SPENLYVSVFEGSDDRDDLGLDTEALELWKKI--VPEERIIYGNKKDNFWEMGDQGPCGP 177

Query: 172 CSEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D + E      PG    + +  + +EIWNLVFMQ+ ++   +   LP   IDTG
Sbjct: 178 CSEIHIDIRSEEEKAKTPGRDLVNMDHPQVVEIWNLVFMQYNRKANGDLEELPAKHIDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFL 285
           MG ER+  VLQ   +NYD D+F  L+   E++TG+ Y     N +  RVI DH+R+ +F 
Sbjct: 238 MGFERLCMVLQNTQSNYDTDVFTPLVGEIEEITGVTYGKSEENNIAMRVIADHVRAVAFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+P L  +MG+ + EL   +
Sbjct: 298 IADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVPVLSGQMGATFQELKSQQ 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LIE  +R E+  F +TLD+GL+LL+ ++    KD+ ++G+ AF+LYDT G P+D+   I
Sbjct: 358 NLIENVIREEEASFLRTLDQGLILLENLMKE-SKDKTISGEKAFELYDTFGFPIDLTALI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L   G   +D   F   L++Q+ R+R       +  +   W  L      + F+GYD L 
Sbjct: 417 LKENGY-DLDEKGFEAELKKQKDRSREA-----TAVSAGDWIELNPVDEES-FVGYDKLE 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RK                           VE    G+  +VV ++TPFY E 
Sbjct: 470 ADAKIARYRK---------------------------VESKKKGEMFQVVLNKTPFYPEG 502

Query: 525 GGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G     DG  + + D +K+   I       +     TE      ++   R   
Sbjct: 503 GGQVGDKGILMSSDGEVVDVVDTKKENNQIIHFT---KNLPKNTEAEFKAIVNKTERYNT 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLLH AL +ILG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I
Sbjct: 560 ASNHTATHLLHQALRSILGTHVEQKGSMVQSGYLRFDFSHFSKVTGEELEKVENFVNARI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            + L +  +  ++ ++AI  GA AL G KY D VR +          S  LCGG HV +T
Sbjct: 620 REQLSLDEQRNISYQEAIDQGAIALFGEKYGDSVRAIRFG------DSMELCGGIHVKNT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I    I  ES++ +GIRRIEAITG+ A  +   Q   L+ + S LK +  + V  +  
Sbjct: 674 SDIWHFKISGESAVASGIRRIEAITGEAAMKYFEEQTNILEEIKSGLK-NSNDPVKAINN 732

Query: 763 IWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE   L+     L+  K K   +        I  VNF+S  + ++D+  +K +   L 
Sbjct: 733 LQEENINLKRQIESLLKDKAKNLKSKLKHEVKSINGVNFLSKKV-DLDAAGIKDLAFQLG 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++I   + +L G  +  KA +   ++++L+     NA  + R   K + GGGG G+P  A
Sbjct: 792 EEI-DDLFILFGAEQHGKALLSCYISKELVKGKDLNAGQIVRELGKYIQGGGG-GQPFFA 849

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
            +GG N +  ++A+    SF+K
Sbjct: 850 TAGGKNPDGLNEALQKAESFIK 871


>gi|242798694|ref|XP_002483222.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716567|gb|EED15988.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1002

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/970 (31%), Positives = 479/970 (49%), Gaps = 97/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R+ F+++F++ GH  +PSSS++P  DPTL+F N+GM  +K+IF G   P      
Sbjct: 53  TAERVRSEFIDYFKERGHTFVPSSSVVPHADPTLLFANAGMNQYKSIFLGTVDPQSDFAH 112

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 113 LKRAVNSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAITYSWELLTKV 172

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F LD  RLY+T ++ +E        EA ++W+ + G+  D I+     DNFW M + GPC
Sbjct: 173 FGLDPSRLYVTYFEGNESGGLEPDLEAKEIWRNV-GVPEDHILPGNMKDNFWEMGDQGPC 231

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 232 GPCSEIHYDRIGG-RNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 290

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L +  +++TG          +        +RV+ DH+R
Sbjct: 291 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAPEYQGRFGAEDADGVDTAYRVVADHVR 350

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 351 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVEQMGVMFP 410

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG    +          +  L+G   ++LYDT G 
Sbjct: 411 EIKEKQAEVMEVLNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 470

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID   F +A    R +A+  S G      E +   + +      
Sbjct: 471 PVDLTQIMAEERGLS-IDEAEFEEA----RLKAKEASKGQKKAAAETVKLDVHDLG---- 521

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                L   S   K D       P I       SIVKAI      ++       G+++ V
Sbjct: 522 ----KLDNMSDVPKTDDSSKFDSPRI------ESIVKAIYYSKNFIQSTADVPEGEQIGV 571

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG    DG   L++ DVQ    G  +H   ++ G L    S++
Sbjct: 572 ILDRTNFYAEQGGQENDTGIISIDGKAELEVGDVQ-SYGGYVLHTGFIKYGSLAVGDSVM 630

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D + R+ +  NH+ TH+L+ AL  ILG  ++Q GS +  + LRFD +H   ++  EL
Sbjct: 631 CEFDDRRRQPIRNNHTGTHILNFALREILGDGINQKGSLVAAEKLRFDFSHKAAVSDKEL 690

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDR-----------VRVVS 680
             IE    + I QN  V ++ +    A    G  A+ G  Y D              +  
Sbjct: 691 DQIERKSTEYIRQNCGVYSKEVPLATAREITGVRAVFGETYPDPVRVVSVGVEVEEILKD 750

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------H 734
           V+       S   CGGTHVS +GEI  L I+ ES I  GIRRI A+TG  A         
Sbjct: 751 VKDPRWNDISIEFCGGTHVSRSGEIRELVILEESGIAKGIRRIIAVTGDEALQAQLTAVE 810

Query: 735 LMGQDEKLK----------------------SLASFLKVSQGNVVGRV-EEIWEEYRKLQ 771
              + EKL+                      ++++  K    ++  R+ +++ ++ + LQ
Sbjct: 811 FEKRLEKLRTLEHGPAKEMEMKQVQLELNQLAISAVQKAKFRDLFARINKQVLDDQKALQ 870

Query: 772 LIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            +  K+   L        +  D   F++ + +  ++K +   ++ ++ K+    +  +  
Sbjct: 871 KVELKKAQDLIKAYFGAEENKDRTTFVTKLPATSNAKVVSESINFIKSKMADKTVYFIAP 930

Query: 831 SKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +    V +   +   +  + A + +  + GG  GGR   A   G N +K D+ 
Sbjct: 931 DPSGNKVAHGCHVAKAASELGLSPSEWANVVSGAV-GGKAGGRAPTAIGNGTNVDKVDEG 989

Query: 889 IAGVASFLKK 898
           +A    +L+K
Sbjct: 990 VALATEYLQK 999


>gi|68475751|ref|XP_718082.1| hypothetical protein CaO19.5746 [Candida albicans SC5314]
 gi|68475886|ref|XP_718016.1| hypothetical protein CaO19.13169 [Candida albicans SC5314]
 gi|74586350|sp|Q5A8K2|SYA_CANAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
 gi|46439761|gb|EAK99075.1| hypothetical protein CaO19.13169 [Candida albicans SC5314]
 gi|46439836|gb|EAK99149.1| hypothetical protein CaO19.5746 [Candida albicans SC5314]
          Length = 969

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/965 (31%), Positives = 469/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F+K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 25  TASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 85  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA   W K+ G+  D I+  +  DNFW M + GPC
Sbjct: 145 YGLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVEDNFWEMGDQGPC 203

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 204 GPCSEIHYDRIGGRNASA-LVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 263 FERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++      G                   
Sbjct: 443 PVDLTRLMAEEAGLK-IDEEGFERAKEESREASKGSGTKDGK-----------------T 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
            +  D+   S+  + D               V + V  I    + V+       +  ++ 
Sbjct: 485 LVKLDVHALSELDQNDAIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPSIQYGILL 544

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQ  DTG  + DG     + +VQ    G  +H   +  G L     ++ T
Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQ-VYAGYVLHTGNIVDGKLNVGDEIIAT 603

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + +T+ EL+ 
Sbjct: 604 YDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAVTAKELEK 663

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV----- 688
           IE   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+      +     
Sbjct: 664 IEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPT 723

Query: 689 ------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----------- 731
                  S   CGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A           
Sbjct: 724 NTKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQKVANEFE 783

Query: 732 --------RSHLMGQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLI 773
                       + ++ K K L   LK    +V+ +           + I +  +  Q  
Sbjct: 784 QEIDNASSLPFGVAKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKAKQKE 843

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K+ L +    L+  + A    ++H+    ++K +   ++ ++K+ ++  I L+    +
Sbjct: 844 ETKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSIYLLTGETD 903

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K A    V  E +    NA +LA+  ++ + GG  GG+ ++ Q  G      + AI  V 
Sbjct: 904 KVAHGCYVSDEAIAKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGINTAIEEVT 962

Query: 894 SFLKK 898
              K+
Sbjct: 963 KLFKE 967


>gi|322783659|gb|EFZ10997.1| hypothetical protein SINV_01057 [Solenopsis invicta]
          Length = 952

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/951 (32%), Positives = 466/951 (49%), Gaps = 67/951 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            N   IR  +++FF+  GHE + SSS IP +DP+L+FTN+GM  FK IF G   P     
Sbjct: 5   MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPSLLFTNAGMNQFKPIFLGTVDPNSDMA 64

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+ LT 
Sbjct: 65  KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTD 124

Query: 117 EFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T +  D        +E   LW  + G+ A  ++     DNFW M ETGP
Sbjct: 125 VLKLPADRLYVTYFGGDMKSGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+Q+ ++       LPK  ID G+
Sbjct: 184 CGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQYNREPDGSLKPLPKKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q+K  NYD DLF  L  A E+ TG                 + +RV+ DH 
Sbjct: 243 GLERLISVIQDKRANYDTDLFMPLFDAIEKGTGAPPYKGKIGADDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGDVFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I E +  E+ +F KTL RG  LL+  ++ L    ++ GDVA++LYDT+G P+
Sbjct: 363 EVKRDPQSIIEIINEEEIQFLKTLSRGRNLLNRTIAKLESTNVVPGDVAWRLYDTYGFPI 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  ID+  + +A    + +A+  S     G  ++I   +   +  T+  
Sbjct: 423 DLTQLMTEEKGLK-IDMTGYEEA----KKQAQLISQNKAGGVDDQINLDV---HAITELQ 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDL-TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +       K D KV       +      +  V A+ +    V+E  SG++V ++ D+
Sbjct: 475 NQGVKPTDDSPKYDYKVTNTVQYNEYDFAPCTGTVIALRRAKAFVDEVSSGEEVGILLDR 534

Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           T FYAE GGQ+ D G  +    +   +++ +VQ +A G  +H   V  G LR    +   
Sbjct: 535 TNFYAEQGGQIFDEGFLVKVDDEATEIRVKNVQVRA-GYVLHIGTVGEGKLRKGDKVHTN 593

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D + RR +  NHSATH L++AL  +LG+   Q GS + PD LRFD T+  P+T+ +L  
Sbjct: 594 VDTKRRRFVMANHSATHALNYALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTKQLLD 653

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
            E    ++I  N  + T+  +   A    G  A+    Y D VRVVS+      + S   
Sbjct: 654 TEVATQEMIKDNKQIYTKESSLAIAKTIQGLRAMFEETYPDPVRVVSMGVSVEKLESDPL 713

Query: 692 ---------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QD 739
                      CGGTH+  T  I    I SE +I  GIRRI A+TG  A   L       
Sbjct: 714 SKAALETSVEFCGGTHLHYTAHIGDFVIASEDAIAKGIRRIVALTGPEATKALRTSTLLQ 773

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADV--- 794
           +++ +L   +  S+ NV    + +    + L+  L   +R  +  V          +   
Sbjct: 774 QQILALKEMIANSEINVKE-CDNMRNTLKDLKKSLDDKERAAKAAVATSVVQTAQSIIES 832

Query: 795 ----NFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLD 848
                 +  ++    ++K L   +  ++   Q    ML+ +     K   L  V++  +D
Sbjct: 833 NPECKVLVEVMEAYSNTKALDLALKKIKAISQETSAMLISVDHNVNKIYALSSVSKSGID 892

Query: 849 -RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               A +  +     L  G GGG+   AQ+ G N    ++ ++    F  +
Sbjct: 893 EGLKANEWVQAIVP-LMKGKGGGKAESAQASGTNIACLNEIVSKAKEFANQ 942


>gi|257068797|ref|YP_003155052.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559615|gb|ACU85462.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
          Length = 902

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/930 (34%), Positives = 508/930 (54%), Gaps = 69/930 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L FF K  HE++PS+SL+   DP+++FT +GMVPF     G E   Y   
Sbjct: 1   MRTSEIHRRWLAFFAKKDHEIVPSASLVSS-DPSILFTIAGMVPFIPYIVGTETAPYPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND++NVGRT RH TFF+M GNFSFG YFK+ AI  +W+ LT      
Sbjct: 60  ASVQKCIRT----NDIENVGRTTRHGTFFQMAGNFSFGDYFKQGAIDYSWEFLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL+ TV+++DEE+++   ++ GL   +++R+   + FW   + GP GPC E  
Sbjct: 116 GLGFDPERLWFTVWEQDEESYRHVTEVIGLDPQRVVRLPREEIFWDTGQPGPAGPCGEWH 175

Query: 177 FDQGECIPGGL--------PGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMS 223
           FD+G               PG  +  +RYIEIWNLVF Q+ +             L + S
Sbjct: 176 FDRGPEHGPEAVTGTVPEWPGDEQAEDRYIEIWNLVFDQYLRGEGSGKDYPLLGELEQKS 235

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRS 281
           IDTG+G+ER+A +LQ K N Y+ID    +I+ ++++TG +Y     + V+ R+I DH+RS
Sbjct: 236 IDTGLGVERVAFLLQGKQNMYEIDQIFPVIEKAQELTGRRYGAVEEDDVHLRIIGDHVRS 295

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  L+ADG+ P NEGRGYVLRR++RRA+   RLLGYT+P M  LLP   + M  +YPEL 
Sbjct: 296 ALMLVADGVRPGNEGRGYVLRRLIRRAVRSMRLLGYTQPSMPQLLPISHSLMVESYPELE 355

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLD 399
                I E + +E+E F +TL+ G  + +GV+  + ++   +L G+ AF+L+DT+G P+D
Sbjct: 356 ADFARISEIVHAEEEAFRRTLETGTTIFEGVVGAVKEEGGRVLPGEDAFRLHDTYGFPID 415

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQF 457
           +  ++    GL  +D  +F  A++EQR RARA +    +G T+   +S  L ++ G   F
Sbjct: 416 LTMEMASEVGL-QVDAEAFRSAMQEQRERARADAAAKKAGHTDTALYSRLLSQRGGEVPF 474

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY                         + V++ V++++  G++V+   +  +VEVV   
Sbjct: 475 VGY-----------------------TEDTVATTVESVLVDGQLVDTVHAPAQVEVVLAT 511

Query: 518 TPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           TPFYAEAGGQL D G   +  G  +++ DVQK   G+ VH   +  G L    S + TID
Sbjct: 512 TPFYAEAGGQLADQGQISLTGGGLIEVDDVQKPVRGLIVHRGRLLEGELAQGASAIATID 571

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  ++  H+ATH++H +L   LG   +Q GS  +P  +RFD  + + +  + L+ IE
Sbjct: 572 VARRGAIARAHTATHMVHESLREELGGSATQAGSENSPGRMRFDFRYGQAVPKSVLEQIE 631

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VN ++   L V  + M+ ++A A GA AL G KY D VRVVS+    GG  S  LCGG
Sbjct: 632 GRVNTLLQDELTVTDQQMSLDEAKALGAQALFGEKYGDIVRVVSI----GGDWSRELCGG 687

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGN 755
           THV STG I  + ++ E+SI +G+RR++A+ G  A  H   +   +  L+  LKV +   
Sbjct: 688 THVDSTGAIGTVQLMGEASIGSGVRRVDALVGLSAYRHQAKEHALVSQLSELLKVGAAEE 747

Query: 756 VVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKEL 809
           +  RV  + +  + ++   A    ++LQ     L  S   +A V  ++H     + + +L
Sbjct: 748 LPERVRALTQRMKDMEKQLAALRGQQLQAEAGKLVESASDVAGVRLIAHDAGEGIAAGDL 807

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGG 866
           +++   L+ ++   + + + ++        +V+  +   R     A  + R +A+ + GG
Sbjct: 808 RTLALDLRSRLGEDVPVTIAVAGHDGGRAALVIATNATARERGLAAGTMLRGAAEAM-GG 866

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            GGG+P +AQ GG    +   A+  V   +
Sbjct: 867 RGGGKPDLAQGGGGEPARIPAALTAVREAI 896


>gi|241956830|ref|XP_002421135.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36]
 gi|223644478|emb|CAX41294.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36]
          Length = 969

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/965 (32%), Positives = 469/965 (48%), Gaps = 91/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F++  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 25  TASKVRSTFLDYFKQQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAS 84

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 85  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKV 144

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA   W K+ G+  D I+  +  DNFW M + GPC
Sbjct: 145 YGLKEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVKDNFWEMGDQGPC 203

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    IE+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 204 GPCSEIHYDRIGG-RNASDLVNMDDPNVIEVWNVVFIQYNREADGNLRTLPNKHIDTGMG 262

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 263 FERLVSILQNKFSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHVR 322

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 323 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 382

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 383 EISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 442

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++      G                   
Sbjct: 443 PVDLTRLMAEEAGLK-IDEDGFERAKEESREASKGSGTKDGK-----------------T 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
            +  D+   S+  + D               V + V  I    + VE       +  ++ 
Sbjct: 485 LVKLDVHALSELDQNDTIPKTNDEFKYGLENVKAKVVGIYDGSKFVESIEDPSIQYGILL 544

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQ  DTG  + DG     + +VQ    G  +H   +  G L     ++ T
Sbjct: 545 DKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQ-VYAGYVLHTGNIVDGKLNVGDEIIAT 603

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD ++ + +T  EL+ 
Sbjct: 604 YDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSYKQAVTPKELEK 663

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV----- 688
           IE   N  I  N  V  + ++   A   +G  A+ G  Y D VRVVS+      +     
Sbjct: 664 IEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDDLLADPT 723

Query: 689 ------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---RSHLMGQD 739
                  S   CGGTHV+ TG+I  L IV ES I  GIRRI A+TG  A   +      +
Sbjct: 724 NAKWHEISIEFCGGTHVAKTGDIKDLVIVEESGIAKGIRRIVAVTGHDAHHVQKVANEFE 783

Query: 740 EKLKSLASF----------------LKVSQGNVVGRV----------EEIWEEYRKLQLI 773
           +++ + AS                 LK    +V+ +           + I +  +  Q  
Sbjct: 784 QEIDAAASLPFGVVKESKSKELGVALKKLSISVLDKQRLTEKFNKLDKSIKDNLKARQKE 843

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K+ L +    L+  +      +SH+    ++K +   ++ ++K+ +S  I L+    +
Sbjct: 844 ETKKTLDVVNNWLNDKENVSSFLVSHVPITANAKAITEAINLIKKQDKSKSIYLLTGETD 903

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K A    V  E +    NA +LA+  ++ + GG  GG+ ++ Q  G      + AI  V 
Sbjct: 904 KVAHGCYVSDEAIAKGINANELAKSVSENI-GGKAGGKGNIVQGMGDKPEGINTAIEEVT 962

Query: 894 SFLKK 898
              K+
Sbjct: 963 KLFKE 967


>gi|297562016|ref|YP_003680990.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846464|gb|ADH68484.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 888

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/923 (35%), Positives = 491/923 (53%), Gaps = 62/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL FF+KNGH ++PS+SLI   DPTL+   +GMVPFK  F GQ  P +   
Sbjct: 1   METAEIARRFLSFFEKNGHTVVPSASLIA-EDPTLLLVPAGMVPFKPYFLGQRTPPHDTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG+T+RH TFF+MLGNFSFG YFKERAI LAW+L+T      
Sbjct: 60  TSVQKCIRTK----DIEEVGKTSRHATFFQMLGNFSFGDYFKERAIPLAWELVTTPVEEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +D  RL++TVY +D+EA  +W+   G+  ++I R+   +N+W M   GPCGPCSEIF
Sbjct: 116 GFGIDPERLWVTVYLDDDEAEAIWRDKVGVRPERIQRMGKEENYWDMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231
           +D+G    G   G   + +RYIEIWNLVFMQ+E+     +       LPK +IDTG+GLE
Sbjct: 176 YDRGPEY-GVDGGPEADEDRYIEIWNLVFMQYERGEGSGKEYPILGELPKKNIDTGLGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A VLQ   N Y+ D+   ++  + ++TG +Y  N    V  RV+ DH+RS+  L+ DG
Sbjct: 235 RLAAVLQGVDNIYETDIIGRVLHRAAELTGTRYGDNQEQDVMLRVVADHVRSAVMLVGDG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLL-GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           + P NE  GYVLRRI+RR++   RLL G     +  L       M   YP+L+    +I 
Sbjct: 295 VRPGNEKAGYVLRRILRRSIRNLRLLSGTETAFLHELTEVSIDAMKDIYPDLLDRADVIH 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             + +E+  F +TL  G  L          G   + +G  AF+L+DT+G P+D+  ++  
Sbjct: 355 GVIDTEERNFAETLRAGTALFGRAAERTRAGGGTVFSGTDAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D  SF + ++ Q+  A+A +     G  +  ++  + E  G T F+GY     
Sbjct: 415 EQGLS-VDESSFRELMQRQKDTAKADARSKKLGNADISLYARMLEGAGETDFLGY----- 468

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               +   S VK IV  G     A +G KVE+V D TPFYAE+G
Sbjct: 469 ------------------TESESESRVKGIVVDGVSAPAARAGDKVEIVLDSTPFYAESG 510

Query: 526 GQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL DTG    DG   + + DVQK   G+FVH   V  G +  + ++   ID   R  + 
Sbjct: 511 GQLADTGTLTVDGRGVVDVEDVQKPLPGLFVHRGTVRSGEVVLDDTVHAGIDTGRRHAIE 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +HSATHL+H AL   LG    Q GS   P  LRFD T    +    L  +E+ VN ++A
Sbjct: 571 RSHSATHLIHSALRNALGPSAGQAGSENRPGQLRFDFTADSALGGERLAEVEEEVNTVLA 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            ++PV T   + ++A+ +GA A+ G KY DRVRVV +       +S  LCGGTHV ST  
Sbjct: 631 GDIPVQTEEKSLDEALKTGAMAMFGEKYGDRVRVVEM-----SDYSVELCGGTHVPSTAR 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + ++ ++ ESSI +G+RR+EA  G  A   L  +   +  L+  LK  +  +  R++ + 
Sbjct: 686 LGIVKLLGESSIGSGVRRVEAAVGVDAFRRLSKESTLVGQLSEQLKTPREELPERIDSMV 745

Query: 765 EEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
              R  +    K +         ++ + +    A +   +         +L+ ++  ++ 
Sbjct: 746 SRLRAAEREIEKLRAAQVLQAAGSIAEGARRHGAALVVAAPAPEGASGDDLRKLVLDVRG 805

Query: 819 KIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           ++      ++ +  + K++   V+            A +L  ++A+ LGGGGG G+P +A
Sbjct: 806 RLGEDEPAVVAMTAVPKDRPVVVIATNKAAQKAGIKAGELVGIAARALGGGGG-GKPDIA 864

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG +  K D+A+  V   + +
Sbjct: 865 QGGGSDATKVDEALRAVEERVAR 887


>gi|317011441|gb|ADU85188.1| alanyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 847

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/891 (36%), Positives = 490/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+ NGH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFKNNGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           L+I+V+++D+EA KLW+K   + AD+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LHISVHEKDDEAVKLWEKF--VPADRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++TG+ Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMKEISELTGLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKDMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL  ++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNIFVGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S  +       + + E    Q+V V+ ++TPFYAE GG +GD G  + D     +
Sbjct: 458 -----SQALGFFDSDFKEMTETNPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLQIKK-TLKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +HSK +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  R  Q   A        
Sbjct: 686 EAVCGKAFYQLAKEENKELKNARILLKNN--DVIAGINKLKESVRNSQKTPA-------P 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL    I   + +  ++ + D K    ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 MDLPIETINGTSVVVGVVEQGDVK---EMIDRLKNKHEKLLAMVFKQENE-RIALACGV- 791

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           ++   + +A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 792 KNAPIKAHA--WANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAALNVAKN 839


>gi|15612227|ref|NP_223880.1| alanyl-tRNA synthetase [Helicobacter pylori J99]
 gi|6707753|sp|Q9ZJY5|SYA_HELPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|4155760|gb|AAD06738.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 847

 Score =  786 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/891 (36%), Positives = 494/891 (55%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++TG+ Y      + RV+ DH R+ +FL+A  +    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTGLDYASEFQPSFRVVADHARAVAFLLAQEVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNVHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L+HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
               +++ +       + + EA   Q+V V+ ++TPFYAE GG +GD G    D     +
Sbjct: 456 ---CLANALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLTKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + ++     E + ++   V 
Sbjct: 738 -DLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAIVFKKENE-RITLACGV- 791

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +++  + NA   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 792 KNVPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDIENLQAALNLAKN 839


>gi|195577578|ref|XP_002078646.1| GD22412 [Drosophila simulans]
 gi|194190655|gb|EDX04231.1| GD22412 [Drosophila simulans]
          Length = 948

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/962 (30%), Positives = 465/962 (48%), Gaps = 85/962 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R  +L+FF++  H  + SSS IP +DPTL+F N+GM  FK IF G   P    
Sbjct: 3   LLTAKEVRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEM 62

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT
Sbjct: 63  SKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLT 122

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +   L + RLY+T +        + D E  ++W  + GL  + I+  +  DNFW M ETG
Sbjct: 123 QRLALPKDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETG 181

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  ID G
Sbjct: 182 PCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCG 240

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +V+Q K +NYD DLF  L  A +  TG                 + +RV+ DH
Sbjct: 241 MGFERLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADH 300

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
            R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+
Sbjct: 301 ARTITIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAF 360

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PE+ +    I + +  E+ +F KTL RG  LL+  +  LG    + GDVA++LYDT+G P
Sbjct: 361 PEVKKDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFP 420

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ Q +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q 
Sbjct: 421 VDLTQLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQL 472

Query: 458 IGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +   +   K     V  ++         +S + A+  + + V E  SGQK  +V D
Sbjct: 473 QEQGVPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLD 532

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           +T FYAE+GGQ+ D G    + D     + D      G  +H  +VE G L+    L L 
Sbjct: 533 KTNFYAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELH 591

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R     NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++  
Sbjct: 592 IDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSK 651

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            E    +++ +N+P+  +      A    G  ++    Y D VR      +     ++A 
Sbjct: 652 TEQLTKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVR---PANKPPSSFAAAP 708

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
                +  +G IM   I SE +I  GIRRI A+TG  A   L   +   + +   LK + 
Sbjct: 709 T----LRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIVR-LKATI 763

Query: 754 GN---------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            N          V  + E+ E+         +K ++ +  + L+  ++D      A V+ 
Sbjct: 764 DNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAVSV 823

Query: 797 M---------------SHIISEVDS----KELKSVMDALQKKIQSGIIMLVGISKE-KKA 836
                           + ++ ++++    K L + +  ++ ++     M + +  + KK 
Sbjct: 824 TVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDADSKKI 883

Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+ +   + F
Sbjct: 884 FCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQLASKF 942

Query: 896 LK 897
            +
Sbjct: 943 AQ 944


>gi|325285608|ref|YP_004261398.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324321062|gb|ADY28527.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 871

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/930 (35%), Positives = 491/930 (52%), Gaps = 92/930 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR+ FLEFF+   H+++ S+ ++  +DPTLMFTN+GM  FK  F G  +     
Sbjct: 1   MKS-QEIRSQFLEFFKNKTHKIVSSAPMVIKDDPTLMFTNAGMNQFKEFFLGNTEAKNTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+LLTK F +
Sbjct: 60  VVDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEDAISWAWELLTKVFKI 119

Query: 121 DQRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D+  LY+TV++          D+EA  LWKKI  +   +I+     DNFW M + GPCGP
Sbjct: 120 DESSLYVTVFEGSKDKDNLEMDQEALDLWKKI--IPESQILFGNKKDNFWEMGDQGPCGP 177

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D    + +    G    + +  + +EIWNLVFMQ+ ++   E   LP   +DTG
Sbjct: 178 CSEIHVDIRSAEEKAKVSGAELVNMDHPQVVEIWNLVFMQYNRKANGELENLPAKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFL 285
           MG ER+  V+Q   +NYD D+F  +I+  E +T  +Y  N   N   RVI DH+R+ +F 
Sbjct: 238 MGFERLCMVMQGVQSNYDTDVFTPIIREIETITNAEYNKNEDTNIAIRVIADHIRAVAFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG A+PEL + K
Sbjct: 298 IADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTNTMGDAFPELKEQK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LIE  ++ E+  F KTLD+GLVLLD V++     + ++G  AF+LYDT+G P+D+   I
Sbjct: 358 QLIENVVKEEEHSFLKTLDQGLVLLDSVINSAS-SKTIDGRKAFELYDTYGFPIDLTALI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  RG   +D   F+ A++EQ++R+R+ S              +  +    +F+GYD+L 
Sbjct: 417 LSERGYT-LDEKGFDAAMQEQKNRSRSASEVSKEDW------EVLLQDAEQEFVGYDVLE 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  + + RKV  +K                            G++ ++VF+ TPFYAE 
Sbjct: 470 TNVRLVKYRKVTSKK---------------------------EGKQYQLVFNITPFYAEG 502

Query: 525 GGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G     +G  + I D +K+   I       +     T       +D + R++ 
Sbjct: 503 GGQVGDKGYLEAQNGDVVYILDTKKENNEIIH---FAKNLPKNTTDIFKAVVDVKQRQRT 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T+ +LK +ED VN  I
Sbjct: 560 ASNHTATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTTEQLKEVEDFVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             NLP+   R +  ++A+ +GA AL G KY D VR++          S  LCGGTHV +T
Sbjct: 620 EGNLPLEEKRNIPMQEALDAGAMALFGEKYGDTVRLIRFG------QSVELCGGTHVQNT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I SE ++ +GIRRIEAIT    +      +E L  +   L  +  + V  V  
Sbjct: 674 GDIWHFKIKSEGAVASGIRRIEAITSDAVKDFYADNNEVLTDIKEVLN-NAKDPVKAVVS 732

Query: 763 IWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQK 818
           + EE  KL+    +  +    N++    +++ DVN +  +  +V  D   +K +   +  
Sbjct: 733 LQEENNKLKKEIEQLLKDKAKNLKGDLLNELQDVNGVQFLAKKVDLDPAGIKDLCFNMGA 792

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR----- 871
              +   +L G     KA++   ++++L      NA  + R            G+     
Sbjct: 793 NATNM-FLLFGAENNGKATLSCYISKELAAEKDLNAGAIVREL----------GKYIQGG 841

Query: 872 ----PHMAQSGGPNGNKADQAIAGVASFLK 897
               P  A +GG N     +A+    +++K
Sbjct: 842 GGGQPFFATAGGKNPGGIAEALDKAIAYIK 871


>gi|302541105|ref|ZP_07293447.1| alanine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458723|gb|EFL21816.1| alanine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 828

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/863 (35%), Positives = 471/863 (54%), Gaps = 66/863 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  +L FF++ GH ++PS+SLI  +DPTL+  N+GMVPFK  F G+ +P Y+ 
Sbjct: 1   MMESAEIRRRWLRFFEERGHTVVPSASLIA-DDPTLLLVNAGMVPFKPFFLGEVQPPYKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
             +VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW+LLT     
Sbjct: 60  AVSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTGSVAD 115

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + LD  RL+ITVY++D+EA ++W+ + G+ A++I R+    N+WSM   GPCGPCSEI
Sbjct: 116 GGYGLDPERLWITVYEQDDEAERIWRDVVGVPAERIQRLGMGPNYWSMGVPGPCGPCSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
            +D+G    G   G +   ERY+EIWNLVFMQ+E+   + +        LP  +IDTG+G
Sbjct: 176 NYDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGPGEGKENFPILGELPSKNIDTGLG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ   N Y+ D  + ++  + ++TG+ Y    ++ V+ RV+ DH+R+S  LI 
Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVAYGSSHDSDVSLRVVADHMRTSVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRRIMRRA+   R+LG  EP++  L+  +   MG  YPEL+  +  I
Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRILGAAEPVVGELVDVVLKTMGQQYPELLTDRKRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E    +E+  F KTL  G  +LD  +  +      +L GD AF L+DT G P+D+  ++ 
Sbjct: 355 ETVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLPGDKAFLLHDTWGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL+ +D   F + + EQR RA+A +    +G  +   +  + +  G+T+F GY    
Sbjct: 415 AEQGLS-VDEDGFRRLMREQRERAKADAKAKKTGHADLSAYREVADTSGSTEFTGYSDTS 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
           G                        S V  ++  G     A  G +VEVV D+TPFYAE 
Sbjct: 474 G-----------------------ESTVVGLLVDGVSSPAASEGDEVEVVLDRTPFYAEG 510

Query: 525 GGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL DTG   +  G  +++ DVQ+   G+ VH  +V+ G +         ID + RR +
Sbjct: 511 GGQLADTGKIKLASGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGSGAYAEIDVRRRRAI 570

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSATHL H AL   LG   +Q GS  +P   RFD      +    L  +E  +N+++
Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPSAVPGGVLTDVEQKINEVL 630

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ L V   +M+ +DA   GA A  G KY DRVRVV++     G  S  LCGGTHV +T 
Sbjct: 631 SRELDVTAEVMSMDDAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTA 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ ++ ESSI +G+RR+EA+ G  A + L  +   +  L   +K     +  ++  +
Sbjct: 686 QLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVKGRPEELPEKISGM 745

Query: 764 WEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMS----HIISEVDSKELKSVMDALQ 817
             + R  +    + + +  L           DV  ++     +     + +L+ ++  ++
Sbjct: 746 LAKLRDAEKEIERFRAEKVLQAAAGLAEGAKDVRGVALASGRVPDGTTADDLRKLVLDVR 805

Query: 818 KKIQS--------GIIMLVGISK 832
            ++           +I L  ++ 
Sbjct: 806 GRLDQKSGAVDRPAVIALFTVAN 828


>gi|126434971|ref|YP_001070662.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|205830155|sp|A3PZ44|SYA_MYCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126234771|gb|ABN98171.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS]
          Length = 897

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/914 (33%), Positives = 467/914 (51%), Gaps = 71/914 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P YQ  
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQS 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L+ TVY +D+EA +LW++++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMG 229
            D+G      G P ++E+  RYIEIWNLVFMQ E+         +    LP+ +IDTGMG
Sbjct: 176 VDRGPEYGIEGGPEANED--RYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI
Sbjct: 234 IERVACLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LLG  + ++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+    +E+  F +TL  G  L +           + L+G  AF L+DT+G P+++  ++
Sbjct: 354 IQRIAVAEETAFNRTLSSGSRLFEEAAQSTKAAGADRLSGRDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                LA +D   F   + EQR RA+A +       T+   +        TQF G+D L 
Sbjct: 414 AAEADLA-VDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTP 519
                                    + +  I   G  V     + A +  ++E+V D++P
Sbjct: 472 ----------------------TTEARILGIFVDGRRVPVVGHDTATAQHRIELVLDRSP 509

Query: 520 FYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE+GGQ+ D G   G G     +  ++DVQK A+ ++VH   VE G      ++   +
Sbjct: 510 FYAESGGQIADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAV 569

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   I
Sbjct: 570 DPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQI 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+  N+ +  +  V +     E A + GA AL G  Y D VRVV +    GG  S  LCG
Sbjct: 630 EEVTNEAVEADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCG 685

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    
Sbjct: 686 GTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEE 745

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKEL 809
           V  RV  + E  +  +    + +L               ++  V  ++  ++  + + +L
Sbjct: 746 VPARVAGLVERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDL 805

Query: 810 KSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGG 866
           ++++  ++ K+     ++ L+          ++ V     D    A +L +     +  G
Sbjct: 806 RTLVGDIRGKLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANELVKQFGAAVN-G 864

Query: 867 GGGGRPHMAQSGGP 880
            GGG+  +AQ  G 
Sbjct: 865 RGGGKADLAQGSGK 878


>gi|298735738|ref|YP_003728263.1| alanyl-tRNA synthetase [Helicobacter pylori B8]
 gi|298354927|emb|CBI65799.1| alanyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 847

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECP----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + ++       + + EA   Q+V V+ ++TPFYAE GG +GD G    D     +
Sbjct: 458 -----AKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EVSIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPIEKIHGVSLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|300778975|ref|ZP_07088833.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300504485|gb|EFK35625.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 867

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/918 (33%), Positives = 486/918 (52%), Gaps = 75/918 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL++F+   H ++PS+ ++  +DPTLMF+NSGM  FK+ F G + P    +
Sbjct: 1   MTSQEIRQKFLDYFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDFFLGYKTPTAPRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDLD+VGR   HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + + 
Sbjct: 61  ADTQKCLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKKEAIAFAWELLTEVYGIP 120

Query: 122 QRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++ D        + A+  WK  S +S D+II     DNFW M E+GPCGPCS
Sbjct: 121 KENLYVTIFEGDASENLDRDQNAYDFWK--SHISEDRIINGNKKDNFWEMGESGPCGPCS 178

Query: 174 EIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D +       +PG    +++  + +E+WNLVFM+F ++  +    LP   +DTGMG
Sbjct: 179 EIHIDLRTPEEKAAVPGISLVNKDHPQVVEVWNLVFMEFNRKADKSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFL 285
            ER+   LQ K++NYD D+F  LI   E+++G KY    E    +  RV+VDH+R+ SF 
Sbjct: 239 FERLCMALQGKSSNYDTDVFTPLIAKVEELSGKKYTGILEDEKDIAIRVVVDHIRAVSFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP++ G GYV+RRI+RR + Y+ R LG  EP +  L+  L  +MG  +PE+ +  
Sbjct: 299 IADGQLPSSGGAGYVIRRILRRGISYSYRFLGMKEPFLYKLVAVLQEQMGPFFPEIEKQG 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            L+ E ++SE++ F  T++ GL+ ++ ++        ++L     F+LYDT+G P D+ +
Sbjct: 359 KLVTEVIKSEEDSFLNTIETGLIRVEKLIQQTIADNQKVLPTLEVFELYDTYGFPDDLTR 418

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            I   +GL  ID   F    E+QR R++  S        +K++  +  +     F+GYD 
Sbjct: 419 IIAEEKGLT-IDEEGFKAEREKQRKRSQQDSA-------QKVYDWVVLEEKPESFVGYDQ 470

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           +    ++   RKV                            E   G+  +VV   +PFY 
Sbjct: 471 IESETYITRYRKV----------------------------ENKDGEFYQVVLSSSPFYP 502

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ+GD G         Q+ + +K+   I    +++              ++   R+ 
Sbjct: 503 EGGGQVGDKGVLENAAESFQVLETKKENGLII---SLINGLPKDAGALFYAKVNASERKN 559

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS THLLH AL  +LG+HV Q GS + PD LRFD +H   +T  E+  IE+ VN  
Sbjct: 560 SQANHSVTHLLHEALRDVLGTHVEQKGSYVGPDYLRFDFSHFNKMTEEEIALIEEKVNHK 619

Query: 643 IAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +++ +     +  ++A+  GA AL G KY D VR++          S  LCGGTHV +
Sbjct: 620 IKESIALQEFRSIPIQEALDKGAMALFGEKYGDNVRMIQFGS------SKELCGGTHVKN 673

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I SE S  AGIRRIEAI+G ++  +    ++++  L+  LK    +VV  +E
Sbjct: 674 TSEIGHFKITSEGSAAAGIRRIEAISGDKSEEYFKNLEKQITELSQLLKSK--DVVRSIE 731

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           ++ EE   L+      K +    ++    + ++      +    + +D+  +K ++  L+
Sbjct: 732 KLIEENTSLKAEVDALKKEKAKGEIGEWKNAYEQKGNKQLLVKKTSLDAGSVKDIVFQLK 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++I S + +++    + K  + + V++DL   + A  + +  AK + GGGG G P  A +
Sbjct: 792 REIPSSVTIILS-DADGKPMITVGVSDDLAADYQAGAIVKDLAKEIQGGGG-GNPGFATA 849

Query: 878 GGPNGNKADQAIAGVASF 895
           GG N    + A     + 
Sbjct: 850 GGKNLEGLENAYQKALNI 867


>gi|108799313|ref|YP_639510.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868429|ref|YP_938381.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|123178848|sp|Q1B9I0|SYA_MYCSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830156|sp|A1UFI3|SYA_MYCSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108769732|gb|ABG08454.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119694518|gb|ABL91591.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS]
          Length = 897

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/914 (33%), Positives = 467/914 (51%), Gaps = 71/914 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P YQ  
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L+ TVY +D+EA +LW++++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMG 229
            D+G      G P ++E+  RYIEIWNLVFMQ E+         +    LP+ +IDTGMG
Sbjct: 176 VDRGPEYGIEGGPEANED--RYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I A        Y     ++ V +R+I DH R+++ LI
Sbjct: 234 IERVACLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P N+GRGYVLRR++RR +  A+LLG  + ++  L+  +   MG +YPEL+     
Sbjct: 294 GDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+    +E+  F +TL  G  L +           + L+G  AF L+DT+G P+++  ++
Sbjct: 354 IQRIAVAEETAFNRTLSSGSRLFEEAAQSTKAAGADRLSGRDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                LA +D   F   + EQR RA+A +       T+   +        TQF G+D L 
Sbjct: 414 AAEADLA-VDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV-----EEAVSGQKVEVVFDQTP 519
                                    + +  I   G  V     + A +  ++E+V D++P
Sbjct: 472 ----------------------TTEARILGIFVDGRRVPVVGHDTATAQHRIELVLDRSP 509

Query: 520 FYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           FYAE+GGQ+ D G   G G     +  ++DVQK A+ ++VH   VE G      ++   +
Sbjct: 510 FYAESGGQIADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAV 569

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   I
Sbjct: 570 DPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQI 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+  N+ +  +  V +     E A + GA AL G  Y D VRVV +    GG  S  LCG
Sbjct: 630 EEVTNEAVEADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCG 685

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV    
Sbjct: 686 GTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEE 745

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKEL 809
           V  RV  + E  +  +    + +L               ++  V  ++  ++  + + +L
Sbjct: 746 VPARVAGLVERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDL 805

Query: 810 KSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGG 866
           ++++  ++ K+     ++ L+          ++ V     D    A +L +     +  G
Sbjct: 806 RTLVGDIRGKLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANELVKQFGAAVN-G 864

Query: 867 GGGGRPHMAQSGGP 880
            GGG+  +AQ  G 
Sbjct: 865 RGGGKADLAQGSGK 878


>gi|30694735|ref|NP_175439.2| ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/
           ligase, forming aminoacyl-tRNA and related compounds /
           nucleic acid binding / nucleotide binding [Arabidopsis
           thaliana]
 gi|21542451|sp|P36428|SYA_ARATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
 gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 1003

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/968 (31%), Positives = 465/968 (48%), Gaps = 107/968 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
              +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 61  AKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKL 120

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 121 SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 180

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCG
Sbjct: 181 GLPTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCG 238

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 239 PCTEIHYDRI-GNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 297

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+
Sbjct: 298 ERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRT 357

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL
Sbjct: 358 LSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTEL 417

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+
Sbjct: 418 KEHEKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDL 476

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN+A+EE R R+R+       G                     
Sbjct: 477 TQLMAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIV-----------------M 518

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S +KAI      +E + +   V +V   T F
Sbjct: 519 DADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSF 578

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G      + +VQ    G  +H   +  E G +     ++  +DY+
Sbjct: 579 YAEQGGQIFDTGLIEGSFGTFNVCNVQI-FGGFVLHIGYLSKETGEVSVGDKVICKVDYE 637

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  
Sbjct: 638 RRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESI 697

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V ++     +A    G  A+ G  Y D VRVVS+           E  + 
Sbjct: 698 VNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEW 757

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK 743
            + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      + +++
Sbjct: 758 SLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVE 817

Query: 744 SLA-----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             +           S LK              ++  ++  +  E RK Q   A++ L+ +
Sbjct: 818 DASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKS 877

Query: 783 VE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           V+       S         +  +   +D+  ++  +  + +K    I++        KA 
Sbjct: 878 VKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAV 937

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGNKADQ 887
           V   V E   D+F  +D+       LG       P           +A   G + ++   
Sbjct: 938 VCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQGTDASQVQA 989

Query: 888 AIAGVASF 895
           A+   +SF
Sbjct: 990 ALDMASSF 997


>gi|305666370|ref|YP_003862657.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88708362|gb|EAR00599.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 871

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/928 (34%), Positives = 483/928 (52%), Gaps = 91/928 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  FL+FF+   H+++PS+ ++  +DPTLMFTN+GM  FK  F G        +
Sbjct: 1   MNSKEIRAQFLDFFETKKHKIVPSAPMVIKDDPTLMFTNAGMNQFKEFFLGNSVAKSPRM 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFK+ AI+ AW+LLT +  +D
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTDKLQID 120

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  LY++V++          D EA++LW  I  +  D+II     DNFW M + GPCGPC
Sbjct: 121 KDSLYVSVFEGSKDSDNLEMDNEAYELWSGI--VPKDRIIMGNKKDNFWEMGDQGPCGPC 178

Query: 173 SEIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D           G    +++    +EIWNLVFMQ+ ++       LP+  +DTGM
Sbjct: 179 SEIHVDIRPAEEKAETSGAFLVNQDHPLVVEIWNLVFMQYNRKADGALEPLPEKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  +I+  E +T   Y  N    +  RVI DH+R+ +F I
Sbjct: 239 GFERLCMVLQGVQSNYDTDVFTPIIREIETITNADYGKNEEIDIAIRVIADHIRAVAFSI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG+A+PEL   + 
Sbjct: 299 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTETMGNAFPELKDQRQ 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F  TL++GLVLLD ++S   K +++ G  AF+LYDT+G P+D+   IL
Sbjct: 359 LIENVVKEEENSFLNTLEQGLVLLDNLVSKA-KGKVVQGRKAFELYDTYGFPIDLTALIL 417

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G   +D   F++A++EQ+ R+R+ S        ++ W  L +     +F+GYDLL  
Sbjct: 418 EEKGYT-LDEKGFHEAMKEQKDRSRSASE-----IAKEDWMVLSDD-SEQEFVGYDLLET 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  + + RKV  +K                            G++ ++VF+ TPFY E G
Sbjct: 471 NVKLVKYRKVTSKK---------------------------EGEQYQMVFNLTPFYPEGG 503

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK     VH A  +     T  +    +D + R++ + 
Sbjct: 504 GQVGDKGYLEAPNGDVVYILDTKKENNEIVHFA--KNLPKSTSDTFKAVVDKKQRQRTAA 561

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  +LG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I  
Sbjct: 562 NHTATHLLHQALREVLGNHVEQKGSAVHSKYLRFDFSHFSKMTVEELREVENFVNARIEG 621

Query: 646 NLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            LP+   R +  E+A+  GA AL G +Y + VR +          S  LCGG HV  T +
Sbjct: 622 QLPLDENRSVPMEEALKGGAMALFGEEYGETVRTIRFG------QSMELCGGAHVKITSD 675

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SE ++ AGIRRIEAIT    +      +  L  +   L  +Q N V  V+ + 
Sbjct: 676 IWHFKIKSEGAVAAGIRRIEAITYDAVKDFYFHNNRSLFEIKDLLNNAQ-NPVNAVKALQ 734

Query: 765 EEYRKLQLI---HAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E  KL+       K K +    DL     ++  + F++  + ++D+  +K +   +   
Sbjct: 735 DENAKLKKEVEQLLKDKAKNLKGDLLAELKEVNGIQFLAKKV-DLDAAGIKDLSFEMGN- 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR------ 871
            ++ + +L G  +  KA +   ++++L+     NA  + R            G+      
Sbjct: 793 NKNNLFLLFGTEQNGKALLSCYISKELVAEKNLNAGTIVREL----------GKCIQGGG 842

Query: 872 ---PHMAQSGGPNGNKADQAIAGVASFL 896
              P  A +GG N    ++A++    +L
Sbjct: 843 GGQPFFATAGGKNPAGIEEALSKAEEYL 870


>gi|260942927|ref|XP_002615762.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720]
 gi|238851052|gb|EEQ40516.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720]
          Length = 964

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 492/966 (50%), Gaps = 92/966 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + S++R+TFL++F+   H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 19  SASTVRSTFLDYFKNKSHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPTSEFAT 78

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 79  LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 138

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD+ RLY+T ++ DE        EA + W  + G++ D I+    +DNFW M + GPC
Sbjct: 139 YKLDKDRLYVTYFEGDEKNGLEPDLEAKEYWLSV-GVAPDHILPGDAHDNFWEMGDQGPC 197

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 198 GPCSEIHYDRIGG-RNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKPLPSKHIDTGMG 256

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F+ + +    +TG++                 +RVI DH+R
Sbjct: 257 FERLVSVLQDKSSNYDTDVFQPIFEEIRNITGVRPYTGKFGAEDVDGIDTAYRVIADHVR 316

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I+DG +P NEGRGYVLRRI+RR   Y R             L+  +     S +P
Sbjct: 317 TLTFAISDGGVPNNEGRGYVLRRILRRGARYVRKYMNCPIGSFFQQLVDVVIENNSSIFP 376

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+ + K +++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 377 EIAKNKDMLKEILMEEEVSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 436

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID  +F +A EE R  ++A +   G+                  
Sbjct: 437 PVDLTRLMAEEAGLK-IDEEAFEKAKEESREASKATNTKGGA-----------------T 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVF 515
            I  D+   S+    +             + + S + AI    + V+    +GQ+  ++ 
Sbjct: 479 LIKLDVHALSELDNNESITKTNDVYKYGLDNIESKIVAIYDGSKFVDTISEAGQQFGIIL 538

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQ  DTG  + DG     +T+VQ       +H   +  G L+   +++ T
Sbjct: 539 DRTPFYAEQGGQEYDTGSLVIDGSAEFAVTNVQ-SYGSYILHTGTMVEGTLKLNDNVIAT 597

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG  + Q GS + P+ LRFD +H + +T  EL+ 
Sbjct: 598 YDELRRWPIRNNHTGTHVLNFALKEVLGDGIDQKGSLVAPEKLRFDFSHKQALTPKELEQ 657

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +E+  ++II  N  V    +    A   +G  A+ G  Y D VRVVS+            
Sbjct: 658 VENISSEIIKSNKQVYAEEVELTKAKQIAGVRAVFGETYPDPVRVVSIGVAVADLLKDPT 717

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
            +D    S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A+          
Sbjct: 718 NQDWTKLSIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTGHEAQEVQRIAREFS 777

Query: 737 -------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLI 773
                         ++++ K L   LK    +V+ +           + I +  +  Q  
Sbjct: 778 ASLDSADKLSFGPEKEQRAKELGVALKQLSISVLDKQKLNEKFTKLDKSIKDHLKAKQKE 837

Query: 774 HAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +K+ L+     L   +      F++H+    ++K +   ++ ++K+ +   + L+  + 
Sbjct: 838 ESKKTLEAVNGWLKDEEKSKTAFFVAHVPISANAKAITEAINLIKKQHKDKSLYLLTGTS 897

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           EK A    +  E +    +A +LA+  +  + GG  GG+ ++ Q  G +    D A+  V
Sbjct: 898 EKVAHGCYISDEAISKGIDASELAKAVSAHI-GGKAGGKGNVVQGMGDSPEGIDAAVETV 956

Query: 893 ASFLKK 898
              L +
Sbjct: 957 TKLLAE 962


>gi|323436121|ref|ZP_01050628.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|321496436|gb|EAQ38546.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 870

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/928 (36%), Positives = 483/928 (52%), Gaps = 91/928 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  FLEFF+   H ++ S+ ++  +DPTLMFTN+GMVPFK  F G   P    
Sbjct: 1   MKS-QEVRKQFLEFFKSKNHSIVASAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT+   +
Sbjct: 60  LTDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKV 119

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+  +Y+++++ DE        EA+ +W K   +   +II     DNFW M   GPCGPC
Sbjct: 120 DKDSIYVSIFEGDESEGLERDQEAYDIWTK--HIDESRIINGNKKDNFWEMGAQGPCGPC 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +    IEIWNLVFMQ+ +        LP   +DTGM
Sbjct: 178 SEIHVDIRSAEEKAAVDGKSLVNMDHPLVIEIWNLVFMQYNRLANGSLTKLPNQHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ   +NYD D+F  L++  E +T  K        +  RVI DH+R+ SF I
Sbjct: 238 GFERLCMVLQGVQSNYDTDVFTPLMREVETITSSKCGETEETDIAVRVIADHVRAVSFSI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K 
Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFIYKLVSTLVNQMGDAFPELEAQKN 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LI   +R E+  F +TLD+GL+LLD V+++   D + +GD AF+LYDT+G P+D+   IL
Sbjct: 358 LITNVIREEEASFLRTLDKGLILLDNVIANTSGDTV-SGDKAFELYDTYGFPIDLTALIL 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             + L  +D   F  AL+EQ+ R+RA +        E   +++ ++    +FIGYD L  
Sbjct: 417 SEKNLK-LDEAGFEAALKEQKDRSRAATK------VETDDWNILQEDSEEEFIGYDTLEA 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           S  +   RK   +K                            G+  ++VF+ TPFY E G
Sbjct: 470 SIKITRYRKTESKK---------------------------DGELYQLVFNLTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK   + +H A  +     TE +    +D + R + + 
Sbjct: 503 GQVGDKGYLETPSGEVVYIIDTKKENNLIIHLA--KNLPRSTEGTFKAVVDVKQRSRTAA 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH  L  ILG+HV Q GS +    LRFD +H   +TS ELK +ED VN  I +
Sbjct: 561 NHTATHLLHQGLRKILGTHVEQKGSMVHSRNLRFDFSHFSKVTSEELKEVEDFVNARIRE 620

Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           NL +  +  +  + AI  GA AL G KY D VR +          S  LCGGTHV +TG+
Sbjct: 621 NLSLEEQRGIPYDQAIQEGAIALFGEKYGDAVRTIRFGK------SMELCGGTHVKNTGD 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SE ++ +GIRRIEAIT   A+ +   + E    + + LK +Q  V   +  + 
Sbjct: 675 IWHFKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPV-KAITSLL 733

Query: 765 EEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E   L+       K K Q    DL      I  V+F++  + ++D+  +K++   L  +
Sbjct: 734 DENAALKKQVEALIKEKAQNLSGDLAKEFEDIDGVDFLAKKV-DLDAGAIKNLAFKL-GE 791

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR------ 871
            +  + +L G  +  KA +   ++++L+     NA  + R            G+      
Sbjct: 792 NKDNVFLLFGTEQNGKALLSCYISKELVASKNLNAGTVVREL----------GKHIQGGG 841

Query: 872 ---PHMAQSGGPNGNKADQAIAGVASFL 896
              P  A +GG N    D AIA V ++L
Sbjct: 842 GGQPFFATAGGKNPAGIDAAIAEVKNYL 869


>gi|87300751|ref|ZP_01083593.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87284622|gb|EAQ76574.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 896

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/915 (36%), Positives = 498/915 (54%), Gaps = 61/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FL F++  GH  + S+SL+P +DPT++ T +GM+PFK +F GQ +P     T
Sbjct: 17  SGAEIREAFLAFYEARGHRRMASASLVP-DDPTVLLTIAGMLPFKPVFLGQAEPPSPRAT 75

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK  A+  AW+L TK F LD 
Sbjct: 76  SSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTEAMTWAWELATKVFGLDP 131

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L ++V+ +D+EA  +W+   G+   +I+R+   DNFW    TGPCGPCSEI++D    
Sbjct: 132 KHLVVSVFRDDDEAAVIWRDTVGVDPRRIVRLGEADNFWVSGPTGPCGPCSEIYYDFKPE 191

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
           + G      E+  R+IE +NLVFMQF +  +     L   +IDTG+GLERMA +LQ   N
Sbjct: 192 L-GVEHLDLEDDSRFIEFYNLVFMQFNRDAEGNLTPLENRNIDTGLGLERMAQILQGAAN 250

Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   LI+ +  + G+ Y   +     + +VI DH R+ + LIADG+  +N GRGY
Sbjct: 251 NYETDLIYPLIETAATLAGVNYRQLDARGQTSLKVIGDHSRAITQLIADGVTASNLGRGY 310

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           +LRR++RR + + RLLG T P +  +  A    M  AYP+L++ +  I   L  E+ RF 
Sbjct: 311 ILRRLLRRVVRHGRLLGITTPFLTAMGEAAIALMVDAYPQLVERRDAIMAELAREEARFL 370

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL+RG  LL  VLS       ++G+ AF+LYDT+G PL++ ++I    GLA +D+  F 
Sbjct: 371 ETLERGEKLLAEVLS--AGPSQISGEQAFELYDTYGFPLELTEEIAEEHGLA-VDLAGFE 427

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
            A+E QR RA+A S+ L   T +    ++ E+  AT F GY+ L                
Sbjct: 428 AAMEAQRQRAKAASVRLDL-TLQGAIEAMAEQLPATDFRGYEALEHP------------- 473

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA----- 534
                     S V A+V  GE  + A +G  V++V D TPFY E+GGQ+GD G       
Sbjct: 474 ----------SQVMALVVNGEPAQGARAGDAVQIVLDSTPFYGESGGQIGDRGVLAGGAP 523

Query: 535 ---IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                 G+ ++I  V  + + + VHH  +ERG L    ++   +D   RR++  +H+ATH
Sbjct: 524 GAGAEAGVIVRIEAVSHQRK-LIVHHGRIERGELALGDTVTALVDRACRRRVQAHHTATH 582

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  AL  ++   ++Q GS +  + LRFD      I+  +L+ IE+ +N  IA    +  
Sbjct: 583 LLQAALKQLVDPSIAQAGSLVDFERLRFDFHCPHAISPEDLERIEERINGWIADAHALEV 642

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M  E A ++GA A+ G KY D VRVV V        S  LCGGTHV++T EI L  IV
Sbjct: 643 REMELERARSAGAVAMFGEKYADIVRVVDVPG-----VSMELCGGTHVANTAEIGLFRIV 697

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES + AGIRRIEA+ G     +L  +D  +++L    KV  G ++ RV  + +E +   
Sbjct: 698 SESGVAAGIRRIEAVAGPAVLDYLKERDTVVRALGDRFKVQPGEILERVSGLQDELKAAS 757

Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  + +L +   S       ++     +   +  V+   L++    LQ+ + S   +
Sbjct: 758 RALAAARSELALARASALATGALEVGAFRVLVARLDGVEGAALQTAAQQLQEGLGSAAAV 817

Query: 827 LVG-----ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           ++G         K   V     E +     A     + AK  GGGGG GRP +AQ+GG +
Sbjct: 818 VLGGLPAPEEPAKLVLVAAFGAEVIAAGPKAGSFIAVVAKRCGGGGG-GRPQLAQAGGRD 876

Query: 882 GNKADQAIAGVASFL 896
               D A+    + L
Sbjct: 877 AASLDPALEQARADL 891


>gi|163786078|ref|ZP_02180526.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877938|gb|EDP71994.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1]
          Length = 870

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/928 (33%), Positives = 471/928 (50%), Gaps = 90/928 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR+ FL FF+   H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    
Sbjct: 1   MKS-QEIRSKFLNFFEGKQHLIVPSAPMVLKDDPTLMFVNSGMAPFKEYFLGNADPKKNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +
Sbjct: 60  IADSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYGI 119

Query: 121 DQRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D+  LY+TV++          D+EA+ LWK+   +  D+I+     DNFW M + GPCGP
Sbjct: 120 DKDMLYVTVFEGSNDADNLKMDQEAYDLWKEF--IPEDRILMGNKKDNFWEMGDQGPCGP 177

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D    + +    G    + +  + +EIWNLVFMQ+ ++  +    LP   IDTG
Sbjct: 178 CSEIHVDIRSEEEKSKVDGKSLVNMDHPQVVEIWNLVFMQYNRKANKSLETLPNKHIDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFL 285
           MG ER+  VLQ   +NYD D+F  +I+  E +T   Y  +    V  RVI DH+R+ +F 
Sbjct: 238 MGFERLCMVLQGVQSNYDTDVFTPIIREIEAITHKDYGKDEKVDVAIRVISDHVRAVAFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K
Sbjct: 298 IADGQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVNILSKKMGKAFPELKAQK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LIE  ++ E+  F +TL++GLVLLDG++    K + ++G   F+L DT+G P D+   I
Sbjct: 358 QLIENVIKEEESSFLRTLEQGLVLLDGIV-KTSKTKEISGSKVFELKDTYGFPEDLTDLI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +G    +   F  +L+ Q+ R R  S       T      +       +FIGYD L 
Sbjct: 417 LREKGYTY-NAEEFKTSLKAQQDRGREASELKSDDWT------ILHHDEVEEFIGYDTLE 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                            G+  ++VF+ TPFY E 
Sbjct: 470 AHVKITRYRKVTSKK---------------------------DGEMYQLVFNITPFYPEG 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G    +   +      KK   + +H    +     ++  L   +D + R +  
Sbjct: 503 GGQVGDKGYLEDEHGDVVYILDTKKENNLIIHF--TKNLPKHSDEVLKAVVDIKQRYRTE 560

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  +LG HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I 
Sbjct: 561 CNHTATHLLHQALREVLGDHVEQKGSAVHSKHLRFDFSHFSKLTLEELRDVENFVNSRIE 620

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             LP+     + +E AIA GA +L G KY D VR +          S  LCGGTHV++T 
Sbjct: 621 GKLPLEENRSVPKEQAIADGAMSLFGEKYGDNVRTIRFG------QSIELCGGTHVNNTA 674

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I SES++ +GIRRIEAIT    +      +     +   L  +    +  ++ +
Sbjct: 675 DIWHFKITSESAVASGIRRIEAITNDAVKDFYFENNRVYFEMKDLLN-NAKEPLKALQNL 733

Query: 764 WEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKK 819
            +E   L  Q+ +  +    N++    +++ ++N +  +    ++D+  +K V   L  +
Sbjct: 734 QDENTDLKKQIENLLKDKAKNIKGELKNELTEINGVQFLAKKLDLDAGGIKDVSFELGSQ 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR------ 871
            ++ + +L G     KA +   ++++L+     NA  + R            G+      
Sbjct: 794 FKN-LFLLFGSENNGKAILSCYISKELVASKDLNAGTIVREL----------GKHIQGGG 842

Query: 872 ---PHMAQSGGPNGNKADQAIAGVASFL 896
              P  A +GG N    D A+    ++L
Sbjct: 843 GGQPFFATAGGKNPAGIDAALKAAKNYL 870


>gi|183982183|ref|YP_001850474.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M]
 gi|205830153|sp|B2HNC1|SYA_MYCMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|183175509|gb|ACC40619.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M]
          Length = 901

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/935 (34%), Positives = 475/935 (50%), Gaps = 74/935 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ TVY +D+EA  LW++++GL AD+I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+EIWNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPDYGPEGGPVVNED--RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I          Y+     + V +R+I DH R+++ LI
Sbjct: 234 VERVALILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P N+GRGYVLRR++RR +  A+LL     ++  L+  +   MG +YPEL      
Sbjct: 294 ADGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++
Sbjct: 354 INRIAVAEETAFNRTLASGSRLFDEVAGTTRSSGVSVVSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F + + +QR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 ASEAGLT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE-----EAVSGQKVEVVFDQTP 519
                                    + +  I   G+ V      +AV   +VE+V D+TP
Sbjct: 472 ----------------------TSEARILGIFVDGKRVPVVAHGQAVDADRVELVLDRTP 509

Query: 520 FYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            YAE+GGQ+ D G   G G     R  +TDVQK A+ +++H   VE G       +V   
Sbjct: 510 LYAESGGQIADVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAA 569

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R+  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   I
Sbjct: 570 DAGWRKGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQI 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+  N  +  +  V T     E A A GA AL G  Y D VRVV +    GG  S  LCG
Sbjct: 630 EEVTNQAVQADFAVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSIELCG 685

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV+++ +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    
Sbjct: 686 GTHVATSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEE 745

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHII-SEVDSKEL 809
           V  RV  + E  +  +    + +L               +I +V  ++  + SE+   +L
Sbjct: 746 VPARVASLVERLKAAEKELERARLASVRAAAVNAAAGAERIGNVWLVAQRMSSEMTPADL 805

Query: 810 KSVMDALQKKIQS--GIIMLVGISKEK----KASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           ++++  ++ K+ S   ++ L+             V+            A +L +  A  +
Sbjct: 806 RTLVGDIRGKLGSDPAVVALIAAPAGGESSTVPYVVAANRAAQGLGLGANELIKHLATAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             G GGG+  +AQ  G      D A+  + + + +
Sbjct: 866 -DGRGGGKADLAQGSGKKPAGIDAALEALRAEIAR 899


>gi|169829321|ref|YP_001699479.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168993809|gb|ACA41349.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 842

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/859 (36%), Positives = 462/859 (53%), Gaps = 65/859 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +LEFF++ GH   PS+ L+P NDP+L++ NSG+   K  F G+  P    +
Sbjct: 22  MKAVDIRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRI 81

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K   
Sbjct: 82  TNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMG 137

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D   L IT++ ED+EA+ +W +  G+  +++IR+    NFW + E GP GP SEIF+D+
Sbjct: 138 FDPELLSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDR 194

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G                E ERY+EIWNLVF QF          LPK +IDTGMGLER+ +
Sbjct: 195 GVEYGSDENDPEMYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVS 254

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--------------RVIVDHLRS 281
           V+Q    N+D DLF  +I+  E+    KY+  + V+               +VI DH+R+
Sbjct: 255 VVQNVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRT 314

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +F I DG LP+NEGRGYVLRR++RRA+ YA+ +G  +P M  L+P +   M   YPE+ 
Sbjct: 315 VAFAIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVT 374

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399
           +    I+  +++E+ RF +TLD GL + + V         + + G  AF+LYDT+G P++
Sbjct: 375 EKCEFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGADAFRLYDTYGFPIE 434

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + ++     G+  +D   F  A+EEQR RARA    + S   +     L     A++F+G
Sbjct: 435 LTEEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNEV--LANLTVASEFVG 491

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +D L                         ++ + A++  G++ + A  GQ+  V+  +TP
Sbjct: 492 FDTL-----------------------VANTEIAAMIVNGQVEKVASEGQEALVILAKTP 528

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE GGQ+ D+G    D     + DVQK   G  +H  IVE G +  E ++   +   +
Sbjct: 529 FYAEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDD 588

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ATH++  AL  +LG HV+Q GS + PD LRFD +H   +T  EL+ IE  V
Sbjct: 589 RNLIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIV 648

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+ +  ++ VV   M  + A A GA AL G KY D VRVVS+     G +S  LCGG HV
Sbjct: 649 NEKVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHV 703

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + EI    IVSE  I AG RRIEA+TG+ A   +  ++  L   A+ LK +  ++V +
Sbjct: 704 KRSSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTK 763

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-----EVDSKELKSVMD 814
           V+ +  +Y++LQ  +     ++       +     N      S       D+  L+ +MD
Sbjct: 764 VQALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHSSFYKSRSKDNNLLRQMMD 823

Query: 815 ALQKKIQSGIIMLVGISKE 833
            L+  +   +I+L  +  +
Sbjct: 824 DLKALMPKAVIVLGAVDGD 842


>gi|284044488|ref|YP_003394828.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283948709|gb|ADB51453.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 888

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/923 (35%), Positives = 490/923 (53%), Gaps = 69/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
                IR TFL FFQ+  H  L S+ L+P  +DP+++ T +GM P K  F G E+P    
Sbjct: 3   MTSDEIRETFLSFFQQREHLRLQSAPLVPTAHDPSVLLTTAGMHPLKPYFQGVEQPPATR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T+ QKC RA     D++NVG T RH T FEMLGNFS G YFKE  I  AW+L T+ F L
Sbjct: 63  LTSCQKCFRA----TDIENVGNTLRHLTCFEMLGNFSIGDYFKEEVIAFAWELSTQGFGL 118

Query: 121 DQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  R+++TV+  DEE        A +LW+K+ G+  ++I+  +  DNFW    TGPCGPC
Sbjct: 119 DPERIWVTVFGGDEELGLGADEEAIELWQKV-GVPRERIVECSREDNFWQAGPTGPCGPC 177

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SE++ D+G          + E ER++E WNLVFMQ++Q        LP  +IDTG+GL R
Sbjct: 178 SELYLDRGLDFGAPDDLPAGENERFLEFWNLVFMQYDQNPVNTLAPLPSKNIDTGLGLNR 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGI 290
            A +LQ K + ++ D F  LI+  ++++G  Y  +       R++ DH R+ +FL+ADG+
Sbjct: 238 FAAMLQGKESVFETDQFWPLIELGQELSGRSYGQDEATTRALRILADHSRAMTFLVADGV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P+NE RGY+LRR+MRRA+ + R +G     +      +   MG+AYPE+++    I + 
Sbjct: 298 VPSNEDRGYILRRVMRRAIQHGRRIGIEPGFLPKFAARVEQIMGAAYPEIVEHSDAIRKW 357

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L +E+E FG+TL++G  LLD +++      +E L  +  F+L+DT+G P+DI ++I    
Sbjct: 358 LVAEEESFGRTLEQGTKLLDELIAQAKREGEEGLGAEDVFRLHDTYGFPIDITREIAAEH 417

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA---TQFIGYDLLRG 465
            L G+D   F Q +++QR+RARA + G G+        + +   GA   ++F GY     
Sbjct: 418 DL-GVDEPGFEQLMDQQRARARAGAGGKGATGDGLRERAQELAGGAAFQSEFTGYATTA- 475

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V A+        EA    +V V   ++PFYA  G
Sbjct: 476 ----------------------QETTVGAL--------EAEDDGRVLVKLVESPFYAAGG 505

Query: 526 GQLGDTGCAIGDGI--RLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           GQ+ D+G         R ++ DV + A G   V     ERG L+    +   +D Q R  
Sbjct: 506 GQVSDSGWVECADGDCRAEVLDVLRVAGGADQVVVVRPERGALKPGEHVHAVVDRQARHA 565

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL   LG HV Q GS + PD LRFD TH + ++  EL+ +ED VN+ 
Sbjct: 566 TEANHTATHLLHAALRRRLGGHVRQAGSAVQPDKLRFDFTHGQALSPDELRDVEDEVNEW 625

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  N PV       ++A   GA AL G KY D VR+V V     G  S  LCGGTHV ST
Sbjct: 626 VLANFPVRALTTTLDEAKRLGAMALFGEKYGDVVRMVEVG---DGSFSRELCGGTHVRST 682

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            EI L  + +E+S  A +RRIEAITG  A   L   D  L+  A+ L+ +   V   V++
Sbjct: 683 AEIGLFRVTAETSSAANVRRIEAITGPAAVRLLREHDGALRDAATALRATPEQVPAEVDK 742

Query: 763 IWEEYRKLQLIHAKRK----LQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDA 815
           +    ++L+    +        L+V+ L             ++  I   D K L  V D 
Sbjct: 743 LRVRVKELEKAAKQGAGAGNGALDVDALVAGATEHGGGARVVAAAIELPDPKALPDVADR 802

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874
           L+ K+    I+L G   + +  ++  V   L++R   A  + +++A+V GGGGG GR  M
Sbjct: 803 LKGKLGDAAIVL-GTVSDGRVHLVASVAPALVERGVKAGAIVKVAAEVTGGGGG-GRDTM 860

Query: 875 AQSGGPNGNKADQAIAGVASFLK 897
           A++GG +  K  +AI    + ++
Sbjct: 861 ARAGGRDPEKLSEAIDAARTAIE 883


>gi|225423779|ref|XP_002277341.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1002

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/960 (32%), Positives = 462/960 (48%), Gaps = 91/960 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
            + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 60  ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 119

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 179

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K   L    ++     DNFW M +TGPCG
Sbjct: 180 KLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDTGPCG 237

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 238 PCTEIHFDRI-GNRDAASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGF 296

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ ++LQ K +NYD D+F  +  A +Q TG +               + +RV+ DH+R+
Sbjct: 297 ERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVADHIRT 356

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y   +L   E      +  +   MG  +PEL
Sbjct: 357 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDVFPEL 416

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            Q ++ I E +  E+  FGKTL +G+         + + +ILNG  AF L+DT+G PLD+
Sbjct: 417 KQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEV-QGKILNGQDAFVLWDTYGFPLDL 475

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN AL+E R R+R+       GT                    
Sbjct: 476 TQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGTIV-----------------M 517

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S++KAI    E +E A +G +V +V + T F
Sbjct: 518 DADATSALHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLETTSF 577

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--GILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G     Q+ +VQ    G  +H        G       ++  +DY 
Sbjct: 578 YAEQGGQIFDTGSLEGTSGSFQVCNVQIY-GGFILHIGSFTEASGRFSVGDKVICKVDYD 636

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+    L+ IE  
Sbjct: 637 RRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIESI 696

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN+ I   L V ++  +  DA + +G  A+ G  Y D VRVVS+             E  
Sbjct: 697 VNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNEKW 756

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T   A   +       + + 
Sbjct: 757 LSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQEVD 816

Query: 747 SFLK------------------------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
              K                          + ++  ++  + ++ RK Q   A+  +Q  
Sbjct: 817 DASKTEGISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKKFAEENIQKA 876

Query: 783 VEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           V+  +              +SH+   +D+  ++  +  + ++    +++        KA 
Sbjct: 877 VKAATDMAQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFSTDETTNKAV 936

Query: 838 VLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           V   V +  D   +    +    +   L G  G G+  +AQ  G + +   +A+    +F
Sbjct: 937 VYAGVPQKGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVKEAMDVAENF 996


>gi|158298580|ref|XP_318757.4| AGAP009701-PA [Anopheles gambiae str. PEST]
 gi|157013952|gb|EAA14564.4| AGAP009701-PA [Anopheles gambiae str. PEST]
          Length = 946

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/956 (31%), Positives = 471/956 (49%), Gaps = 84/956 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
             S IR+ FL+FF++  H  + SSS+IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 6   TASQIRSIFLDFFKEKEHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPNSDMAK 65

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT+ 
Sbjct: 66  WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTER 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             L + RLY+T +        + D E  ++W K+ G+  + I+  +  DNFW M ETGPC
Sbjct: 126 LKLPKERLYVTYFGGHPESGLEPDLECREIWLKL-GVKEEHILPGSMKDNFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           + +    +EIWNLVF+Q+ ++      +LPK  ID GMG
Sbjct: 185 GPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREQDSSLKLLPKKHIDCGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  L  A ++ TG                 + +RV+ DH R
Sbjct: 244 FERLVSVIQDKRSNYDTDVFMPLFDAIQKGTGAAAYQGRVGADDSDGVDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +PE
Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVQLLGETFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  +  E+++F KTL RG  LL+  ++ LG  +++ GDVA++LYDT+G P+D
Sbjct: 364 VRKDPQHIKNVINEEEQQFLKTLTRGRNLLNRTIAKLGNSKVIPGDVAWRLYDTYGFPID 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   +   + +  ID+  + +A    +  +   S G     T  I   +   +G ++   
Sbjct: 424 LTLLMAEEKQMT-IDMEGYEKA----KHESYIISQGKEKSKTATIDLDV---HGISELQE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKP-PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
             +       K   K     P    +    +  + A+      VEE  +GQ+  V+ D+T
Sbjct: 476 RKVPATDDSFKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRT 535

Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            FYAE+GGQ+ D G  +    +     ++ V     G  +H  +VE G LR    +   +
Sbjct: 536 NFYAESGGQIYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHM 593

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R+    NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +T  ++   
Sbjct: 594 DVVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAMTIEQVAEA 653

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEY 683
           E    +++ +N+ V  +  N   A    G  ++    Y D VRV+S              
Sbjct: 654 ERLTREVVKRNVQVYAKEANLAVAKTIRGLRSVFDEVYPDPVRVISFGVPVEQLEADPTG 713

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E G ++S   CGGTH+  +G ++   I +E +I  GIRRI A+TG  A   L   +   +
Sbjct: 714 EAGVINSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEALKALKKTELLEQ 773

Query: 744 SLASFLKV--------SQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVED-L 786
            L+                  V ++ E+ ++         +K +L    + L+  ++D  
Sbjct: 774 ELSKLRATIDGDKEGREAKEHVKKIIELTDDVSQATIPYVKKDELRTVLKGLKKALDDKE 833

Query: 787 SCHKIADVNFMSHIISEV-----DSKELKSVMDAL--QKKIQSGIIMLVGISKEKKASVL 839
              + A  + +     E+     D+  L   ++AL   K + S +  +  ++ E+ A  L
Sbjct: 834 RVARAAVASGVVEKAKELSQAHKDAPFLVQRLEALNNTKALDSALKEVRKVNPEQSALFL 893

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                       A +     A V+ GG GGG+P  AQ+ G N +KAD+ +     F
Sbjct: 894 --------SGLKANEWISHIAPVM-GGKGGGKPESAQASGGNFDKADEILELARLF 940


>gi|302834443|ref|XP_002948784.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f.
           nagariensis]
 gi|300265975|gb|EFJ50164.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f.
           nagariensis]
          Length = 980

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/917 (35%), Positives = 485/917 (52%), Gaps = 42/917 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL FF+  GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ        
Sbjct: 81  MSGAEIREAFLSFFESKGHTRLPSSSLVP-EDPTVLLTIAGMLQFKPVFLGQAPRKVPTA 139

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKCVR     ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T  F L 
Sbjct: 140 TTTQKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIRWAWELSTGVFGLP 195

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             R++++V++ED EA  +W+ + G+  ++I R+   DNFWS   TGPCGPCSE+++D   
Sbjct: 196 PERVWVSVFEEDGEAEAIWRDVVGVPPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHP 255

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
              G    S E+  R+IE +NLVFMQ  ++       L   +IDTGMGLERMA +LQ   
Sbjct: 256 E-RGTEGASLEDDTRFIEFYNLVFMQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVP 314

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           NNY+ DL   ++Q + ++  + Y   +       +VI DH R+ +++++DG+ P+N GRG
Sbjct: 315 NNYETDLIFPIVQKAAEIAAVDYHSASPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRG 374

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR +   RLLG  E     +        G   P + +    I + L  E+  F
Sbjct: 375 YVLRRLLRRVVMKGRLLGIREVFTPAVAAVAVGLSGPCDPAVQKNAQRIYDELAREEGLF 434

Query: 359 GKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             TL+RG   LD +LS         ++ G  AF LYDT G PL++ Q++  ARG+  +D+
Sbjct: 435 VATLERGQKQLDELLSAATASTGSRVIGGADAFMLYDTFGFPLELTQELAEARGVE-VDV 493

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF-IGYDLLRGSKFMKEDRK 474
             F+  +E QR R++     +       +     + +  +    G  +   ++ M+    
Sbjct: 494 AGFDGEMEAQRQRSKESRETVDLTAQAGLAQLAAQTHSRSWLPPGVRIPIRTQRMRVGPT 553

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                            V  ++++G+ VE   +G + EV+ D TPFYAE+GGQ+GD G  
Sbjct: 554 SFTGYSATRGC----GRVVGLMREGKPVERVHAGDRCEVLLDVTPFYAESGGQVGDMGRL 609

Query: 535 I--------GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           +             + + D QK A G +FVH   V  G L    ++   +D   RR++  
Sbjct: 610 VLPAAAGEAEVAAEVAVRDCQKAAGGSVFVHSCEVVAGELGVGDAVNALVDDDLRRRVRA 669

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +H+ATHLL  AL  +LG    Q GS +    LRFD   ++ ++ +EL  +E  VN  +AQ
Sbjct: 670 HHTATHLLQSALKIVLGPDTCQQGSLVNFQRLRFDFNLARAMSPSELTEVERLVNCWVAQ 729

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P+ TR+M  ++A A+GA A+ G KY+D VRVV V        S  LCGGTHV +T EI
Sbjct: 730 AAPLETRVMGLQEAKAAGATAMFGEKYDDVVRVVDVPG-----ISMELCGGTHVGNTAEI 784

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               I+SES I +GIRR+EA+ G  A  +L   D  ++ LA  LKV    V  RV  +  
Sbjct: 785 GAFKILSESGIASGIRRVEAVAGTAAVEYLHTVDGLVRGLAGQLKVKLEEVPSRVAALQS 844

Query: 766 EYRKLQLIHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           E R  + + ++ K QL V   + L    +     +  +++E+  +       A+Q  +  
Sbjct: 845 ELRSTEKLLSELKAQLAVAQSQSLVGEAVTAPGGLKVLVAELPGEV---EAKAMQGALGD 901

Query: 823 GIIMLVG--ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
              +L+        K + +  ++   +     A  +    AKV GGGGG G+P +AQ+GG
Sbjct: 902 PAAVLLASRAVDGSKVNFVAALSPGAVKGGLQAGKVVGAVAKVCGGGGG-GKPALAQAGG 960

Query: 880 PNGNKADQAIAGVASFL 896
            + +K ++A+      L
Sbjct: 961 RDASKTEEALEVGRKLL 977


>gi|295132657|ref|YP_003583333.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294980672|gb|ADF51137.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 869

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 499/919 (54%), Gaps = 72/919 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR +FLEFFQ   H ++PS+ ++  +DP+LMFTN+GMV FK  F G   P    
Sbjct: 1   MKS-QEIRKSFLEFFQGKSHSIVPSAPMVLKDDPSLMFTNAGMVQFKEFFLGNSVPKNTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT +F +
Sbjct: 60  VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAINWAWELLTHKFKI 119

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+  LY++V++  E        EA ++WKKI  +  D+II     DNFW M + GPCGPC
Sbjct: 120 DKDSLYVSVFEGSEEDGVGLDTEALEIWKKI--VPEDRIIYGNKKDNFWEMGDQGPCGPC 177

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D +        PG    + +  + +EIWNLVFMQF ++       LP   IDTGM
Sbjct: 178 SEIHVDIRSPEEKAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEELPAKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+  V+Q K +NYD D+F  LI   E++T   Y       +  RVI DH+R+ +F I
Sbjct: 238 GFERLCMVMQGKQSNYDTDVFTPLITEIEKITNSSYGTSEETNIAIRVIADHVRAVAFSI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+    ++MG A+PEL++ + 
Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVDCTKSQMGEAFPELVKQQQ 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LIE  ++ E+  F +TL++GLV+L+ +++   KD+ ++G  AF+LYDT G P+D+   IL
Sbjct: 358 LIENVIKEEELSFLRTLEQGLVMLENIVTQ-SKDKEISGVKAFELYDTFGFPIDLTALIL 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G + ++I  F   L++Q+ R+RA +  + SG  E+I      +     F+GYD L  
Sbjct: 417 KEKGYS-LNIAEFEAELKKQKERSRAATQ-VSSGDWEEI-----NEVDEDAFVGYDQLET 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              + + RK                           VE    G   ++VF +TPFY E G
Sbjct: 470 QVKIAKYRK---------------------------VETKKQGTLYQIVFTKTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G       ++ I D +K++  I       ++       S    +D   R + + 
Sbjct: 503 GQVGDKGYLTSGEEKISIIDTKKESNQIIH---FAKKLPQNISGSFTAVVDASARTKTAA 559

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL  ILG+HV Q GS + P+ +RFD +H   ++S E++ +E  VND I +
Sbjct: 560 NHTATHLLHQALRHILGTHVEQKGSMVQPNYMRFDFSHFSKLSSEEIEKVEQFVNDRIQE 619

Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            L +  +  +  + A+  GA AL G KY D VR +          S  LCGGTHV +T +
Sbjct: 620 GLQLEEQRNIAYQHALDQGAIALFGEKYGDSVRAIRFG------ESMELCGGTHVKNTAD 673

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I  ES++ +GIRRIEAITG   + +   Q E L+ +   LK +  + V  +  + 
Sbjct: 674 IWYFKITGESAVASGIRRIEAITGDAVKEYFTKQTELLEEVQGLLK-NAKDPVKAISGLQ 732

Query: 765 EEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKI 820
           +E   L  Q+    +    N++    ++I ++N +  +  +V  D+  +K +   L  +I
Sbjct: 733 DENADLKKQVEALLKDKTKNLKSEIKNEIQEINGIQFLAKKVDLDAGGIKDLAFQLGGEI 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
              + +L G  ++ KA +   ++++L      NA  + R   K + GGGG G+P  A +G
Sbjct: 793 -DDLFLLFGTEQKGKALLSCYISKELVETKDLNAGTIVRELGKYIQGGGG-GQPFFATAG 850

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N     +A+     +++
Sbjct: 851 GKNPAGIPEALKEAKKYIE 869


>gi|261839960|gb|ACX99725.1| alanyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 847

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/891 (36%), Positives = 483/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH +  S  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEYKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
               ++  +       + + +A   Q+V V+ ++TPFYAE GG +GD G    D     I
Sbjct: 456 ---CLAKALGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLFKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQIL-GGKGGGRSDFASAGGKDIENLQAALNLAKN 839


>gi|296394106|ref|YP_003658990.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181253|gb|ADG98159.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 892

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/923 (35%), Positives = 480/923 (52%), Gaps = 66/923 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL  F KNGHEL PS+SLI  +DP L+F N+GMV F   F GQ  P    +
Sbjct: 1   MRTAEIIERFLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRL 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKERAIQLAW LLT      
Sbjct: 60  TSIQKCVRTQ----DIEEVGVTTRHNTFFQMAGNFSFGDYFKERAIQLAWTLLTSSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY++D+EA  LWKK++GL  +++ R    DN+WSM   GP GPCSEI+
Sbjct: 116 GYGFDPERLWATVYEDDDEAITLWKKVAGLPDERVQRRGPADNYWSMGIPGPSGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+EIWNLVFMQ E    + +        LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ D+ + +I  +EQ+TG +Y      +    RVI DH R++  LIA
Sbjct: 235 ERVAFLLQGVDNVYETDVVRPVISVAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  ARLLG TE     L+  + + M   YPEL      I
Sbjct: 295 DGVNPGNDGRGYVLRRLLRRIVRAARLLGATELATPALVAQVVSSMSPMYPELSHEAARI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E T   E+  F  T+D G  L + V +       +I+ G  AF L+DT+G PL++  ++ 
Sbjct: 355 ERTAAGEEHAFRNTIDSGSKLFEQVAAGALGSSRKIIPGTEAFALHDTYGFPLELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F Q + EQR RA+A +        ++  +        T+F G+D L  
Sbjct: 415 REVGLE-VDQEGFAQLMAEQRRRAKADAKSRKQAHEDQSAYQALLDGPPTEFTGFDEL-- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                     +  +V  G++  E  +GQ+ +++ D+TP YAE+G
Sbjct: 472 ---------------------SSFGTILGVVVDGQLANEVRAGQEAQIILDRTPLYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL DTG     G   +++DVQK A+ +F H   V  G   T   +   +D + R   + 
Sbjct: 511 GQLADTGSISAPGAFAEVSDVQKIAKRLFAHRVKVVEGAFATGQEVTAQVDSKWRHGANQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  +LG   +Q GS   P  LRFD      ++    + IE  V + +  
Sbjct: 571 GHSGTHLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPQAKQEIESVVGEAVET 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + PV T + + + A A GA AL G  Y +RVRVV +    GG  S  LCGGTHV S+ ++
Sbjct: 631 DYPVNTFVTDIDRARAMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVPSSAKV 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + ++ ESS  +G RR+EA+ G  AR HL  +   L ++AS +         +V  + E
Sbjct: 687 GPVVLLGESSTGSGTRRVEALVGYDAREHLAKERALLAAVASAVGAPAPEAPDKVRALVE 746

Query: 766 EYRKLQLIHAKR----------KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815
             + L+   A++           L  +   +     A V F+S    EVDS +L+ +  +
Sbjct: 747 RVKTLEREIARQAQAQARAQAGNLAQSASPVRLCSGAVVEFVSA---EVDSDDLRGLAAS 803

Query: 816 LQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           +++   S   +  L   S EK A  ++           A +L R  A  +  G GGG+  
Sbjct: 804 MKEAFGSRAAVAALFHKSGEKVAFAVLATKAANELGAKAGELLRAVAPAVN-GRGGGKDD 862

Query: 874 MAQSGGPNGNKADQAIAGVASFL 896
           +AQ  G + +    A A +   +
Sbjct: 863 LAQGSGTDPSAVPAAQAKLREEI 885


>gi|254445806|ref|ZP_05059282.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198260114|gb|EDY84422.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 883

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/925 (33%), Positives = 460/925 (49%), Gaps = 90/925 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FL+FF    H ++PS+SL+P + P L+FTN+GM  F   F G+ +     +
Sbjct: 1   MTSNQIRQSFLDFFASKQHAIVPSASLMP-DAPNLLFTNAGMNQFVPYFLGERESANPRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDL++VG    HHTFFEMLGN+S G YFK+ AI+ AW+L+T+ +   
Sbjct: 60  TDTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSIGDYFKQEAIEWAWELITEVWKFP 119

Query: 122 QRRLYITVYDE--------DEEAFKLWK---KISGLSAD-KIIRITTNDNFWSMAETGPC 169
           + RLY TVY          D+EA+  WK   + +GL     II     DNFW M +TGPC
Sbjct: 120 KERLYATVYKPGEGDPATFDQEAYDFWKAIFEKAGLDPKVHIIYGNKKDNFWMMGDTGPC 179

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+  D            + +    IEIWNLVF+QF    + +   L    +DTGMG
Sbjct: 180 GPCSELHIDLTPAGDTKGSLVNADSPYCIEIWNLVFIQFNATPEGDFVPLKNQHVDTGMG 239

Query: 230 LERMATVLQEK---------TNNYDIDLFKHLIQASEQVTGMKYE-------------GN 267
            ER+A ++             +NY+ DLF  L Q  E+++G  Y+               
Sbjct: 240 FERVAGIMATSKNFTDFSTPPSNYNSDLFDTLFQEFEKLSGHTYQRTLPEDLENISEVEM 299

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
             V  RV+ DH+R  S  IADGILP NE R YVLRRI+RRA+ Y R LG        L+P
Sbjct: 300 KDVIFRVLADHIRCLSCSIADGILPGNESRNYVLRRILRRAVMYGRKLGLENGFFAQLVP 359

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
            +  ++G  +PEL   + +I++ ++SE++ FG+TLDRG+ L D + S     + ++G  A
Sbjct: 360 IVVAQLGHVFPELKAQEEIIQKIIKSEEDAFGRTLDRGIQLFDKIASE---QDQISGLDA 416

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
           F LYDT+G P+D+ Q +   R +  +DI  F   +E++R +++      G+   + +   
Sbjct: 417 FTLYDTYGFPIDLTQLMARQRNMK-VDIAGFEAEMEKRRQQSK-----DGAKAAQILIAE 470

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV- 506
            +     T+F+G++ L                                  + E+++    
Sbjct: 471 RENDAEPTRFVGFNTLA--------------------------------DEDELIDVVKG 498

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 +VF+ +PFYAE GGQ+GDTG    +     + D  K A G F+H    +   + 
Sbjct: 499 ENNSSYLVFNHSPFYAEMGGQVGDTGSIEFEDRHFDVLDTIKDANGRFLHKVSGDAENI- 557

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
                 L +D + RR +  +HSATH+LH AL  +LG+HV Q GS +    LRFD  H + 
Sbjct: 558 LGHHANLIVDVKRRRSIERHHSATHVLHWALRKVLGTHVHQAGSYVDDQRLRFDFAHFEA 617

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           I   +L  IE   N+ +  N  V        +       A  G KY D VRVV +     
Sbjct: 618 IKPEQLALIEKLCNEQLLANNKVNWYETPFNE-KPKEVIAFFGDKYGDVVRVVDI----- 671

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G  S  LCGGTHV +TGEI LL I SES I AG RRIEAI G    SH+   +  + S +
Sbjct: 672 GGFSIELCGGTHVRATGEIGLLKIASESGIAAGTRRIEAIVGDSLYSHINDMEATIASAS 731

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV 804
             L  +   ++ +++ +     +L+      ++K   N+ D       + N +  + ++V
Sbjct: 732 KSLSTAPNELIKKIDIVLARNAELEKQLKSFQQKASGNLADDLLKSATETNGLKLVAAKV 791

Query: 805 ---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
              D   L+ +   L  K+  G+++L    K K + V     E +     A D+ R    
Sbjct: 792 TASDPNALRQLGATLIGKLGEGVVVLGAEVKGKVSVVAFSSQEAVKAGHKAGDIIRDLTA 851

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKAD 886
            L  G GGG+P  A  G  N  + +
Sbjct: 852 KL-DGRGGGKPDFAMGGATNVAELE 875


>gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana]
          Length = 1003

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/968 (31%), Positives = 465/968 (48%), Gaps = 107/968 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
              +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 61  AKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKL 120

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 121 SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 180

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCG
Sbjct: 181 GLPTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCG 238

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 239 PCTEIHYDRI-GNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 297

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+
Sbjct: 298 ERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRT 357

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL
Sbjct: 358 LSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTEL 417

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+
Sbjct: 418 KEHEKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDL 476

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN+A+EE R R+R+       G                     
Sbjct: 477 TQLMAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIV-----------------M 518

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S +KAI      +E + +   V +V   T F
Sbjct: 519 DADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSF 578

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G      + +VQ    G  +H   +  E G +     ++  +DY+
Sbjct: 579 YAEQGGQIFDTGLIEGSFGTFNVCNVQI-FGGFVLHIGYLSKETGEVSVGDKVICKVDYE 637

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  
Sbjct: 638 RRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESI 697

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V ++     +A    G  A+ G  Y D VRVVS+           E  + 
Sbjct: 698 VNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEW 757

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK 743
            + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      + +++
Sbjct: 758 SLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVE 817

Query: 744 SLA-----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             +           S LK              ++  ++  +  E RK Q   A++ L+ +
Sbjct: 818 DASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKS 877

Query: 783 VE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           V+       S         +  +   +D+  ++  +  + +K    I++        KA 
Sbjct: 878 VKLATEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAV 937

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGNKADQ 887
           V   V E   D+F  +D+       LG       P           +A   G + ++   
Sbjct: 938 VCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQGTDASQVQA 989

Query: 888 AIAGVASF 895
           A+   +SF
Sbjct: 990 ALDMASSF 997


>gi|291301348|ref|YP_003512626.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290570568|gb|ADD43533.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 885

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/920 (33%), Positives = 475/920 (51%), Gaps = 63/920 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  FL  F+ NGH ++PS+ L    DP L+F N+GMV F   FTGQ+ P +   
Sbjct: 1   MRTAEIKRRFLAHFEANGHTVVPSAPLPAIEDPNLLFINAGMVQFVPYFTGQQTPPWTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG T RH TFF+M GNFSFG YFKE+AI+LAWDL+T+     
Sbjct: 61  TSVQKCIRT----PDIEEVGITTRHGTFFQMNGNFSFGDYFKEKAIELAWDLMTRPQSQG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +LY +VY +D+EA  LWK+I+GL  ++I R+  ++NFWSM   GPCGPCSEI 
Sbjct: 117 GLGFDESKLYPSVYVDDDEAIGLWKRIAGLPDERIPRLGKSENFWSMGIPGPCGPCSEIL 176

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQF------EQQNKQERFILPKMSIDTGMGL 230
            D G          + +  RY+E+WNLVFMQ        +++ +    LP  +IDTGMGL
Sbjct: 177 LDLGPEFGEEGDFLNGD--RYMELWNLVFMQNLRGEGTNKEDFEILGDLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N ++ID  + LI  + ++TG +Y  +  + V  RVI DH+R+   LI D
Sbjct: 235 ERVAYMLQGVNNMFEIDEVRPLIDRASELTGKRYGASRPDDVRFRVIADHVRTGLMLIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRRI+RRA+   RLLG+ +  +  LLP     M  +YPEL +    I 
Sbjct: 295 GVTPSNEGRGYVLRRILRRAIRAIRLLGFEDKALPELLPVARDCMSPSYPELSEDFERIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
                E+E F  TL +G  +LD  +         +L G  AF+L+DT+G P+D+  ++  
Sbjct: 355 SYAYGEEEAFRSTLRQGTTILDTAVKDTKASGGTLLPGAKAFELHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465
            +GL  +D   F Q + EQR RA+A +    +   +   +  L    G T +  Y+ L  
Sbjct: 415 EQGLK-VDEEGFRQLMAEQRRRAKADAQSRKTAHADMSAYRELLTAGGPTDWKAYETLNT 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++ +G  ++ A  GQ VEVV D+TPFYAE+G
Sbjct: 474 -----------------------ESTVLGMLAEGSPIQVAKEGQLVEVVLDKTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G   G  +  ++ DVQ+  +G+ VH   V +G L    ++   +D + R     
Sbjct: 511 GQHADAGTITGASVSAEVVDVQRPIKGLVVHQVRVLKGELAVGTAVKADVDPEWRLGARQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG    Q+GS   P  LR D +    ++      +E+  N  + +
Sbjct: 571 AHSGTHVVHAALREVLGPAALQSGSFNRPGYLRLDFSWRSKLSDESRSEVEEAANRAVRK 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPV  + M   +A   GA AL G  Y++ VRVV +    GG  S  LCGGTHV    +I
Sbjct: 631 DLPVAVKYMTLPEAREFGALALFGETYDETVRVVEI----GGEWSRELCGGTHVQHAAQI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I SE+S+ +G RR+EA+TG  A  +L  + + +  +A  L   +  +  R+  + +
Sbjct: 687 GPVVITSEASVGSGQRRVEAVTGLEAFHYLARERDLVSQIADELGAPRAELPERISALMQ 746

Query: 766 EYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQKK 819
             +  +   A  + +              KI DV   +          + + +   ++  
Sbjct: 747 RAKDAEKELANLRAKELRDSAATFAAQAKKIGDVAVAAVQAPDGTGGGDARKLATEIRGH 806

Query: 820 IQ--SGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +      I  V  +   KAS++++V +       +A  L + +      G GGG   +AQ
Sbjct: 807 LDPNKPGIAAVAATAGGKASLVVIVNKTGTAQGLSAQALVKGALS----GRGGGNDEVAQ 862

Query: 877 SGGPNGNKADQAIAGVASFL 896
            GG   ++A   +  V++ +
Sbjct: 863 GGGVPADQASALLQAVSAQV 882


>gi|308177509|ref|YP_003916915.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307744972|emb|CBT75944.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 896

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/919 (35%), Positives = 495/919 (53%), Gaps = 68/919 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I   +++FF   GH  +PS+SL+   DP+L+FT +GMVPF    T +E+  Y   
Sbjct: 1   MKTQEIARRWVDFFVSKGHTAVPSASLVSA-DPSLLFTVAGMVPFIPYLTAREEAPYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R G    D++ VG+T RH TFF+M GNFSFG YFK+ AI  AW+LLT      
Sbjct: 60  TSVQKCIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKKEAIHFAWELLTSSLEDG 115

Query: 118 -FDLDQRRLYITVYDEDEE----AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + LD+ RL++TVY++ +E    A ++W+   G+ A++++     DN+W+  + GP GPC
Sbjct: 116 GYGLDKERLWVTVYEDGDEKDTEARRIWEDEIGMPAERVVGTGKEDNYWNTGQPGPGGPC 175

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDT 226
           SEI++D+G    G   G + +  RY+EIWNLVFMQ+     + +        LPK +IDT
Sbjct: 176 SEIYYDRGPAY-GMEGGPAVDETRYVEIWNLVFMQYRLSAVRSKTDFDVAGELPKRNIDT 234

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277
           G+GLER+A +LQ   N Y+ D  + ++  + ++  + Y              V  R+I D
Sbjct: 235 GLGLERLAMILQGVENMYETDQVRPVLDKAAELASVTYTSTEDPADPNHATDVRLRMIAD 294

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+RSS  LI+D + P NEGRGYVLRR++RRA+   RL+G    ++  LLP     M   Y
Sbjct: 295 HIRSSLMLISDQVTPGNEGRGYVLRRLIRRAVRAMRLMGVDSEVLPELLPVSRDAMKGVY 354

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGL 396
           PE+      I     +E+  F +T+  G   LD  L H  ++ + L+GD AF L+DT+G 
Sbjct: 355 PEVEADFERIARIAYAEERAFRRTIASGTTRLDEALGHAKEEGKNLSGDDAFALHDTYGF 414

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+  +I    GL+ +D   F + + EQR+RA+  +    +G  +   ++   + G   
Sbjct: 415 PIDLTLEIAAEAGLS-VDEPRFRELMNEQRTRAQKDAKAKKAGHADLSVYNKLAEAGNVH 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F GYD L G                        S ++ I++ G++V  A  GQ++++V +
Sbjct: 474 FTGYDTLEG-----------------------ESSIRGIIRDGQLVPFAEQGQEIDLVLN 510

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +TPFYAE+GGQ GD+G   GDG  L++TDVQ   +G+ VH  +V  G L  E  +   +D
Sbjct: 511 ETPFYAESGGQAGDSGLITGDGFVLEVTDVQAPVKGLNVHKVVVREGELPAEALVRTQVD 570

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              RR     HSATHL+H AL  +LG   +Q GS      LRFD + ++ +++A    +E
Sbjct: 571 AMRRRSGEQAHSATHLVHAALRELLGPTATQAGSFNKAGYLRFDFSWAEALSAAARSEVE 630

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           + VN  I  N  VVT  M   +A   GA +L G KY++ VRVV +     G  S  LCGG
Sbjct: 631 EVVNLAITSNYQVVTNEMALSEAKKLGAMSLFGEKYSNDVRVVEM----NGDWSRELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV +T  I  L ++SE+S+ +G RR+EA+ G  A  H   +   +  L+   +V    V
Sbjct: 687 THVDTTARIGQLTLLSEASVGSGNRRVEALVGMEAFRHGAAERALVSELSGLFRVPSSQV 746

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADV---NFMSHIISEVD-SKELK 810
             RV +   + +  +   A+ K Q  L        K+  +     ++H    +D +  L+
Sbjct: 747 SERVNDTVAKLKAAEKQIAELKSQAMLAQSAALLEKVVTIGSTRLLAHNAGAIDSADALR 806

Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           ++   L+ K+ S   +I+L+G++  +   + +   E   + F A  L R +  VLGGGGG
Sbjct: 807 TMALDLRGKLGSEAAVIVLIGVANGRPLVLAVTNDEARANGFKAGALVRTATGVLGGGGG 866

Query: 869 GGRPHMAQSGGPNGNKADQ 887
            G+  MAQ GG + +K D 
Sbjct: 867 -GKDDMAQGGGQDASKIDD 884


>gi|112984224|ref|NP_001037452.1| alanyl-tRNA synthetase, cytoplasmic [Bombyx mori]
 gi|135089|sp|P21894|SYAC_BOMMO RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|155955|gb|AAA27821.1| transfer RNA-Ala synthetase [Bombyx mori]
          Length = 967

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/976 (31%), Positives = 473/976 (48%), Gaps = 97/976 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
              + IR TF++FF K GH+ + SSS IP +DPTL+F N+GM  FK IF G   P     
Sbjct: 5   MTGNEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMA 64

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+     AW+LLT 
Sbjct: 65  QYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTD 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            F L + RLY+T ++ D         E   +W  + G+    I+  +  DNFW M ETGP
Sbjct: 125 VFKLSRERLYVTYFEGDPSSGLEPDLECRNIWLNL-GVPEAHILPGSMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LP   ID G+
Sbjct: 184 CGPCSELHYDRIGD-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPTKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+ DH 
Sbjct: 243 GLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGVDDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  +P
Sbjct: 303 RTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLGDVFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I   +  E+ +F KTL RG  LL   +  L   + L GDVA++LYDT+G P+
Sbjct: 363 EIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRLYDTYGFPI 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL  +D+  + +     R  ++  S G  +G  + I   +   +  +   
Sbjct: 423 DLTQLMCEEKGL-NVDMEGYEK----SRKESQLVSQGKAAGQEDLIALDV---HAISHLQ 474

Query: 459 GYDLLRGSKFMKEDR-KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +       K +       K  +      ++ + A+ +  E V E  SGQ+  V+ D+
Sbjct: 475 DTGIPATDDSPKYNYLPSSTDKDALYTFAPCTAKIVALRKNKEFVSEISSGQECGVILDR 534

Query: 518 TPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ+ D G  +  D   ++ T    + +G +V HA    GIL+   +L L ID
Sbjct: 535 TSFYAEQGGQIFDEGYMVKIDDETVEFTVKNVQVKGGYVLHAGKVEGILKVGDTLSLHID 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + RR +  NH+ TH+L++ L  +LG+   Q GS + PD LRFD T+  P+T  ++K  E
Sbjct: 595 TERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPMTIKQIKDTE 654

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEYE 684
           + + +IIA+N  V     +  +A   +G  A+    Y D VR           + + +  
Sbjct: 655 NEIKEIIAKNKTVYANYTSLSEAKKINGLRAMFDEHYPDPVRVVSVGVPVEDLIKNPDAP 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEK 741
            G   S   CGG+H+  T  I    IVSE  I  GIRRI A+TG  A   +      + +
Sbjct: 715 TGFETSVEFCGGSHLHRTSHIGEYVIVSEEGIAKGIRRIVAVTGPEAIKAINKLSVLENE 774

Query: 742 LKSLASFLKVSQG-----NVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLSC 788
           + ++A+F+K          V  ++ ++  E        ++K +L +  + L+  ++D   
Sbjct: 775 VNNVANFIKEQNESISHKEVSKKIVDLTNEISQAQISYWKKDELRNMLKNLKKQLDDKER 834

Query: 789 HKIADV---------------NFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVG 829
            + A +                   +I+SE+    ++K L   +  +++   +   M   
Sbjct: 835 AEKAIIITQVTEKAKELCLERKESKYIVSELKAFGNTKALDGALKQVKQFCPNSAAMFFS 894

Query: 830 ISKE-KKASVLIVVTE-DLLDRFNAVDLARLSA------KVLGGGGGGGRPHMAQSGGPN 881
           + K+  K   L  V + D+     A +  +                       AQ+ G N
Sbjct: 895 VDKDADKIYCLAAVPKSDVEKGLLASEWVQSVVDIIGGKGGGK-------AESAQASGNN 947

Query: 882 GNKADQAIAGVASFLK 897
            N  ++AI     + K
Sbjct: 948 PNSLNEAIQIANEYAK 963


>gi|33866890|ref|NP_898449.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|41018174|sp|Q7U3R9|SYA_SYNPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33639491|emb|CAE08875.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 889

 Score =  781 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/889 (36%), Positives = 485/889 (54%), Gaps = 53/889 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            IR  FL F+ + GH+ + S+SLIP  DPT++ T +GM+PFK +F GQ++      T+ Q
Sbjct: 19  DIREAFLNFYAERGHQRMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSSQ 77

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ + +D R L
Sbjct: 78  KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTQVYGIDPRNL 133

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185
            ++V+ ED+EA ++W+ + G++  +IIR+   DNFW+   TGPCGPCSEI++D    + G
Sbjct: 134 VVSVFREDDEAEQIWRDVVGVNTKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-G 192

Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
                 E+ +R+IE +NLVFMQ+ +  +     L   +IDTGMGLERMA +LQ+  NNY+
Sbjct: 193 DDGIDLEDDDRFIEFYNLVFMQYNRDAEGNLTPLANRNIDTGMGLERMAQILQKVPNNYE 252

Query: 246 IDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            DL   LIQA+  +  + Y   +     + +VI DH R+ + LI DG+  +N GRGY+LR
Sbjct: 253 TDLIFPLIQAAADLACVDYAQLDDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYILR 312

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RR + + RLLG  +P ++ +  A    +  A+P +I+ + +I   L+ E+ RF +TL
Sbjct: 313 RLLRRVVRHGRLLGIDKPFLVTMGEAAIDLLKGAHPGVIERQEVILAELQREEARFLETL 372

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RG  LL  VL+   +   ++G  AF+LYDT+G PL++ Q+I   + +  +D+  F  A+
Sbjct: 373 ERGEKLLAEVLA--SRPTQISGAQAFELYDTYGFPLELTQEIAEEQRIT-VDLDGFEVAM 429

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RA+A ++ +     + I   +     AT F GYD L                   
Sbjct: 430 EEQRQRAKAAAVSIDLTLQDAI-EQVAGDQPATAFKGYDALDHP---------------- 472

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  S V+A+V  G     A +G  V+VV D TPFY E GGQ+GD G   G  + + 
Sbjct: 473 -------STVQALVVNGAPASTASAGDVVQVVLDSTPFYGEGGGQVGDRGSLSGVDVIVA 525

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           I  V +  + +FVH   +ERG L    ++   +D   RR+   NH+ATHLL  AL  ++ 
Sbjct: 526 IDSVSRSRD-VFVHSGRMERGHLAVGDTVNAQVDRSCRRRAQANHTATHLLQAALKQVVD 584

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
             + Q GS +  D LRFD      +T+ +L  IE  +N  IA+   +  + M  + A A+
Sbjct: 585 PGIGQAGSLVDFDRLRFDFHCPTAVTAEQLAQIETLINGWIAEAHCLEVQEMAIDQAKAA 644

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA A+ G KY D V        D    S  LCGGTHV++T EI L  IV+ES + AGIRR
Sbjct: 645 GAVAMFGEKYADVV-----RVVDVPGVSMELCGGTHVANTAEIGLFKIVAESGVAAGIRR 699

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKR 777
           IEA+ G    ++L  +D  +K L    K     +V RV  + EE +              
Sbjct: 700 IEAVAGPAVLAYLNERDAVVKQLGDRFKAQPAEIVDRVTALQEELKATGKALAAAQAELA 759

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE---- 833
             +          + +   +   +  V+   L+    +L  ++  G  +++G   +    
Sbjct: 760 VAKAGALAAKAEAVGEFQLLVERLDGVEGAGLQGAAQSLADQLGDGAAVVIGGLPDPGDL 819

Query: 834 KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            K  ++    + +   +  A       AK  GGGGG GRP++AQ+GG +
Sbjct: 820 GKVILVAAFGKQVIAAKLQAGKFIGGIAKQCGGGGG-GRPNLAQAGGRD 867


>gi|327349463|gb|EGE78320.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1088

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/970 (31%), Positives = 471/970 (48%), Gaps = 97/970 (10%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            +   +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 122  SALRVRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFAT 181

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK 
Sbjct: 182  LKRAHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKV 241

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L+  RLY+T ++ +         EA +LW  + G++ D ++     DNFW M E GPC
Sbjct: 242  YGLEPDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPC 300

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG
Sbjct: 301  GPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMG 359

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
             ER+ ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R
Sbjct: 360  YERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIR 419

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAYP 338
            + +F I+DG  P NEGRGYV+RR++RR   YAR  L          ++P L  +MG  +P
Sbjct: 420  TLTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFP 479

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
            E+ + +  + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G 
Sbjct: 480  EIRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGF 539

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ Q +   RGL  ID   F +A    R +A+  S G G  T + +  ++ +      
Sbjct: 540  PVDLTQLMAEERGLT-IDNAEFEEA----RLKAKEASKGQGKQTADVVKLTVHD------ 588

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                           +               ++S +KAI    + V+       G++  +
Sbjct: 589  --------LGLLETMNNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGI 640

Query: 514  VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 641  ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQ-VYGGYILHTGFMKYGSFNVNDSVI 699

Query: 573  LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
               D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 700  AEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 759

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
            + IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVSV  E       
Sbjct: 760  EKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQN 819

Query: 685  ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                     S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A        E
Sbjct: 820  VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKE 879

Query: 741  KLKSL---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQ 771
              + L               A  L+V    +    V +V          +++ E  +  Q
Sbjct: 880  FGERLQRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQ 939

Query: 772  LIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +K+ L          +  D  + +  +    + K +   ++ ++ K+ +  + +   
Sbjct: 940  KLESKKALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMHNKSVYVFAA 999

Query: 831  SKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             K   K      V + L        + A   + ++ GG  GG+  +A   G    K + A
Sbjct: 1000 DKGAGKVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDA 1058

Query: 889  IAGVASFLKK 898
            I     +L+K
Sbjct: 1059 IKAATEYLEK 1068


>gi|33239500|ref|NP_874442.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|81665176|sp|Q7VEG5|SYA_PROMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|33237025|gb|AAP99094.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 892

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/914 (36%), Positives = 510/914 (55%), Gaps = 60/914 (6%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +++   IR  FL F+ + GHE++PS+SL+P NDPT++ T +GM+PFK +F G +    
Sbjct: 12  MKSLTGEEIRAAFLNFYAERGHEIVPSASLVP-NDPTVLLTIAGMLPFKPVFLGHQDRPS 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             VT+ QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L    F
Sbjct: 71  ARVTSCQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSINVF 126

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            L+   + I+++ ED+EA ++W+ + G++  +IIR+   DNFWS   TGPCGPCSE+++D
Sbjct: 127 GLNPSHIVISIFREDDEAEQIWRDVIGVNPRRIIRMDEKDNFWSSGPTGPCGPCSELYYD 186

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
               + G      E+  R+IE +NLVFMQ+ + +      L   +IDTGMGLERMA +LQ
Sbjct: 187 FHPEL-GEEEIDLEDDTRFIEFYNLVFMQYNRNSSGTLTSLANCNIDTGMGLERMAQILQ 245

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANE 295
              NNY+ DL   L++    +  ++YE  N     + +VI DH R+   LI DG+  +N 
Sbjct: 246 GVANNYETDLIYPLLEKIASLIDVQYEDLNATIKASFKVIGDHTRACVHLIGDGVSASNL 305

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR + + RL+G T+P ++ +       M SAYP+L++ + LI + L+ E+
Sbjct: 306 GRGYVLRRLLRRVVRHGRLIGITKPFLVQIAEVAIELMQSAYPQLLERRQLIFKELQREE 365

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            RF +TL++G  LL  +LS      ++ G+ AF+LYDT+G P+++ ++I     L  +D+
Sbjct: 366 TRFLETLEKGEKLLAELLSKAPS--VITGEAAFELYDTYGFPVELTEEIAEENDLR-VDM 422

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A++EQR RA++ ++ +     + I   + E  G T F+GY  L            
Sbjct: 423 KGFKKAMDEQRRRAKSAAMTIDLTLQDTIDKVVSE-VGETNFLGYQQLE----------- 470

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         S V+AIV  G   +E   G K+++V + TPFY E GGQ+GD G   
Sbjct: 471 ------------QFSQVQAIVVNGVSSQECNVGDKIDIVLNMTPFYGEGGGQIGDRGIIS 518

Query: 536 GDGIR-----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                     ++I  V+ + +G FVH  +V+ G+L    ++  T+D  +RR    NH+AT
Sbjct: 519 SASSDDSECLIEIDSVR-RVKGAFVHSGLVKNGVLTLGDNVQCTVDSFSRRCAQANHTAT 577

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL   + S ++Q GS +  D LRFD    +P++ AEL+ IE  +N  I++   +V
Sbjct: 578 HLLQAALKKAVDSDITQAGSLVDFDRLRFDFHFVRPVSGAELEHIEKLINGWISEAHSLV 637

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
              M+  +A   GA A+ G KY + VRVV          S  LCGGTHV++T EI L  I
Sbjct: 638 ISEMSINEAKRVGAIAMFGEKYGEVVRVVD-----VPGVSKELCGGTHVTNTAEIGLFKI 692

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           VSE+ I AGIRRIEAI GQ    +L  +D  +K L+   K     +V RV  + +E + L
Sbjct: 693 VSETGIAAGIRRIEAIAGQGVLDYLNDRDGVVKILSERFKAQSNEIVDRVIALQDEVKSL 752

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNF-----MSHIISEVDSKELKSVMDALQKKIQSGII 825
             +  K + ++        K   V+      +   +  V    ++SV+  L  ++     
Sbjct: 753 TKLLVKAQDEVAFTKALSLKNKVVSLTNSQYLIERLDGVTGDAIQSVVKTLVDELGDNAA 812

Query: 826 MLVG----ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +++     ++ +KK  ++     +++    +A       A++ GGGGG GRP+ AQ+GG 
Sbjct: 813 VVLAGMPDLNDQKKVILVAAFGSEIIAQGLHAGQFLGPIAEICGGGGG-GRPNFAQAGGR 871

Query: 881 NGNKADQAIAGVAS 894
           +  K D A+     
Sbjct: 872 DPTKLDDALDLAKE 885


>gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana]
 gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana]
 gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana]
          Length = 955

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/968 (31%), Positives = 465/968 (48%), Gaps = 107/968 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
              +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 13  AKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 73  SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 132

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCG
Sbjct: 133 GLPTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCG 190

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 191 PCTEIHYDRI-GNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 249

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+
Sbjct: 250 ERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRT 309

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL
Sbjct: 310 LSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTEL 369

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+
Sbjct: 370 KEHEKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN+A+EE R R+R+       G                     
Sbjct: 429 TQLMAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIV-----------------M 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S +KAI      +E + +   V +V   T F
Sbjct: 471 DADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSF 530

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G      + +VQ    G  +H   +  E G +     ++  +DY+
Sbjct: 531 YAEQGGQIFDTGLIEGSFGTFNVCNVQI-FGGFVLHIGYLSKETGEVSVGDKVICKVDYE 589

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  
Sbjct: 590 RRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESI 649

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V ++     +A    G  A+ G  Y D VRVVS+           E  + 
Sbjct: 650 VNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEW 709

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK 743
            + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      + +++
Sbjct: 710 SLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVE 769

Query: 744 SLA-----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             +           S LK              ++  ++  +  E RK Q   A++ L+ +
Sbjct: 770 DASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKS 829

Query: 783 VE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           V+       S         +  +   +D+  ++  +  + +K    I++        KA 
Sbjct: 830 VKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAV 889

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGNKADQ 887
           V   V E   D+F  +D+       LG       P           +A   G + ++   
Sbjct: 890 VCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQGTDASQVQA 941

Query: 888 AIAGVASF 895
           A+   +SF
Sbjct: 942 ALDMASSF 949


>gi|255994094|ref|ZP_05427229.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993762|gb|EEU03851.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 878

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/912 (36%), Positives = 492/912 (53%), Gaps = 64/912 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ IR  FL FF+  GH    S  L+P +D +L+  NSGM P K  F+G++ P  + +TT
Sbjct: 13  VNEIREKFLSFFEGKGHLRAHSFPLVPQDDDSLLLINSGMAPLKPFFSGEKTPPAERMTT 72

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D+DNVG T RH TFFEMLGNFSFG YFK+ +I+  ++ +T    +   
Sbjct: 73  SQKCIRTG----DIDNVGHTARHGTFFEMLGNFSFGDYFKKESIEWGYEFITDVLKIPSE 128

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +L+ITVY +D+EA+K+W +  G+  +++ R+  +DNFW +   GPCGPCSEIF+D+GE  
Sbjct: 129 KLHITVYKDDDEAYKIWNEDVGIPGERLYRLGKDDNFWEIGN-GPCGPCSEIFYDRGEEY 187

Query: 184 PGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G        + +RY+E WN VF QF +    +   L   +IDTGMGLERMA ++Q   
Sbjct: 188 GCGSKECSPGCDCDRYLEFWNHVFTQFNKTQDGKYEPLSHPNIDTGMGLERMACIMQGVE 247

Query: 242 NNYDID---LFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           + +DID     K  I+       ++    +      VI DHLRS++F+++DGILP+NEGR
Sbjct: 248 SIFDIDTISFIKGFIEGKAMDAKVRLSSEDFNTGLNVITDHLRSATFMLSDGILPSNEGR 307

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RR++ +A  LG     ++     +      AYPEL+  K  I   ++ E  +
Sbjct: 308 GYVLRRLLRRSIIHANKLGLDSDALVETAGKVIETSEGAYPELVAQKEHIFTEIKDECAQ 367

Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F KTLD G  +L+G +  L ++  +IL+G+ AFKLYDT G P+++  +IL    +  +D 
Sbjct: 368 FKKTLDSGESILNGYIDALKEEGSDILDGERAFKLYDTFGFPIELTAEILEGFSMK-VDF 426

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F + +E Q+  AR      GSG        L E     +F GY+              
Sbjct: 427 EGFKKHMEYQKELARKGRKNEGSGFD---MVELGESIEPCEFTGYESAA----------- 472

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                       V+ +V       E V          V+ D+TPFY   GGQ  DTG  +
Sbjct: 473 -----------EVAKVVFCTEADSEGV--------FYVILDRTPFYPRGGGQEPDTGKLV 513

Query: 536 GDGIRLQITDVQKKAEGIFVHH------AIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
             G    + DV KK + I              +  +     +  T+D +NR     NH+A
Sbjct: 514 ISGNEFCVLDVSKKKDVIVHAVKFAGKEGKGSKISINKGDEVSATVDLKNRNAAMANHTA 573

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THL+H AL  ++   ++Q GS ++ DGLRFD+ + KP++  EL+ IE  VND IA  LPV
Sbjct: 574 THLMHAALRELISKDITQAGSKVSCDGLRFDINYKKPLSYEELRDIEVWVNDRIASWLPV 633

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             RIM +++AI SGA  L   KY D VRVVS+E       SS LCGG HV +TG I    
Sbjct: 634 TKRIMKKDEAIKSGAIGLFSDKYKDDVRVVSIE-----DASSELCGGLHVDNTGYIGSFK 688

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV ES++ +G RRIEAITG+ A ++L+  D + K L S  K   GN+  +V++++ E + 
Sbjct: 689 IVKESAVSSGTRRIEAITGRAASNYLLQLDAEKKKLESLTKTQDGNIYDKVQKLYSEIKD 748

Query: 770 LQLIHAKRKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           L+   +K K     +D    +    +  V F S I+ +++  ++K +  +L ++ ++ ++
Sbjct: 749 LKADLSKLKKGRASDDISGSIEIKDVEGVKFGSAILGDMEIPDMKDLATSLTQRDKN-LV 807

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L+    EK   V+    + +   ++A DL +  A +  G  GGG+P MAQ+GG +    
Sbjct: 808 LLLASQGEKFTMVMACGEDAVDKGYSAGDLIKQVAPIC-GAKGGGKPKMAQAGGGDEKLF 866

Query: 886 DQAIAGVASFLK 897
           D     V S LK
Sbjct: 867 DDVCKAVLSALK 878


>gi|15834749|ref|NP_296508.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270284916|ref|ZP_06194310.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270288943|ref|ZP_06195245.1| alanyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|13878778|sp|Q9PLH5|SYA_CHLMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|7190160|gb|AAF39003.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 875

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/907 (35%), Positives = 502/907 (55%), Gaps = 48/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYTNRNHTPVASSPVFPYNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKATSPLEDADGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLSE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++ + Y    +     RVI DH+RS SF I DG+LP N  R
Sbjct: 238 TDTVFEADVLRHLIAKVENLSEITYSPTESKGSAFRVIADHVRSLSFAITDGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  A+  I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFHRPFLAEIVPSLIETMGEAYPELQAAETQIQEVLTTEEEH 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        +D+ +
Sbjct: 358 FFKTLQRGGNLLHQVLKSSASLSKISGEDAFKLKDTYGLPIDEIALLAKDHNYT-VDMDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R +++      ++ I+  + +    ++F+GYD+L    F         
Sbjct: 417 FRKLEMEAKERSRKNTVK-NKNDSDSIFQDV-DPTNTSEFVGYDMLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ IV+  EI      G++  ++   TPFYAE GGQ+GD+G    +
Sbjct: 466 --------------IEGIVKYNEIASTLEEGEEGAIILRTTPFYAEKGGQVGDSGEIFCE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+  HH  + +G L+T M++   ++   R++++ NH+  HLLH AL
Sbjct: 512 SGTFLVSHTTTPKAGLIAHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D +H+K ++  EL +IE  VN+ I +N+PV  R     
Sbjct: 572 EVSLGEHIRQAGSYVDSQKIRLDFSHNKALSPEELLTIETLVNEKIRENVPVTIREALYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D + S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++
Sbjct: 632 DVMNSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHARATGDIGYFRITKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L    A 
Sbjct: 686 STGIRRIEATTGEDAENIARGQDTDLNEIATIIQSPKDQLLVKLRNVMEEKKDLAKQLAN 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C K+ + +++ + ++E + + ++   + L K++ +  I L    
Sbjct: 746 LENQLVQQQVKSLLTSCDKVNETSYLVYHLTEEEGQRIQHYANTLHKEVPAKFISLWVTE 805

Query: 832 KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K  +  VL+ V++DL+    +A  L         GG  GG+   AQ       +  + + 
Sbjct: 806 KNDRYIVLVRVSDDLVKQGIDAQALLEELLAP-YGGRCGGKAVSAQGSSKELPQI-EVLN 863

Query: 891 GV-ASFL 896
            +   ++
Sbjct: 864 TILRQWI 870


>gi|206901044|ref|YP_002250743.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206740147|gb|ACI19205.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 866

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/911 (35%), Positives = 489/911 (53%), Gaps = 62/911 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S IR  F+++F KN H  LPS+SL+P +DPTL+FT +GMVPFK  F GQ  P  + 
Sbjct: 1   MMKSSDIRRKFIDYFVKNDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGVPPKRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +TTVQKC R      D++ VG T RH TF EMLGNFSFG YFK  AI  A++ LTKE  +
Sbjct: 61  ITTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGI 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC-SEIFFDQ 179
              +L+I+VY+ED+EA+ +W K  G+  ++I+R+   DNFW            SEI++D 
Sbjct: 117 PVSKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDF 176

Query: 180 GECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           G            +  +R++EIWNLVFM +      +   LP+ +IDTGMGLER+ TV++
Sbjct: 177 GPKTKEEENCKPGDPCDRFMEIWNLVFMAYYMDEDGKLSPLPQKNIDTGMGLERITTVVE 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             +N ++ DLF  +IQ  + +     E ++    R+I DH+R  +FL+ DG++P NEGRG
Sbjct: 237 GVSNVFETDLFLPIIQEIKNII----ENSDPTTERLISDHIRGITFLMGDGVVPTNEGRG 292

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRR++RR++  A   G  EP +  L+P +   M  AYPELI  K  I++ L  E+E+F
Sbjct: 293 YVLRRLIRRSLRRAYKHGIKEPFLYKLVPVVVEIMKEAYPELIDRKDYIQKVLIREEEQF 352

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            +TL++GL LL+     +  +++++G+ AFKLYDT+G P+++ Q+I    G   IDI  F
Sbjct: 353 LRTLEQGLALLEDYFKKVS-NKVVSGEFAFKLYDTYGFPIELTQEIAGEEGFK-IDIDEF 410

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-------YGATQFIGYDLLRGSKFMKE 471
           N+ +EEQR +ARA          E+ + SL ++          T+F+GYD L     +  
Sbjct: 411 NKYMEEQREKARAS----MEEKLEESFISLSDEEVYYMRNLPKTEFVGYDTLETESNV-- 464

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                                      G+  +  + G++V  + D+TPFYAE GGQ+ D 
Sbjct: 465 ----------------------LFFVGGKHGKNILEGEEVYFLMDKTPFYAEGGGQVSDK 502

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G      + ++I DV+K  E   +H   V +G  +    +   +D + R     +H+ATH
Sbjct: 503 GKVYNSEVEVEILDVKKLGEDFIIHRGKVLKGEFKEGQIVKAEVDKEKRYHTMRHHTATH 562

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH AL   LG+HV Q+GS ++P+ LRFD TH  P++  +LK IE  VN+ I  N  V  
Sbjct: 563 LLHSALREYLGTHVMQSGSLVSPEFLRFDFTHHSPLSYEDLKIIEKKVNENILANHKVEK 622

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
                E+A   GA AL   KY   VRV+ ++       S  LCGGTHV  TGEI   YIV
Sbjct: 623 FWTTLEEARRMGAIALFTEKYQKNVRVIKIDN-----ISMELCGGTHVDYTGEIGSFYIV 677

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E  I +GIRRI A+ G +A  +   ++E +  ++  L  S   V  +VE++  E ++ +
Sbjct: 678 KEEGIGSGIRRIFAVCGLKAWEYQKRKEEIVNKVSLLLNSSLDEVHIKVEKLLNELKEKE 737

Query: 772 --LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIML 827
             +   + K+     ++  + +  ++  S I + +D     +K + D L+ K  + I++ 
Sbjct: 738 RKIKDLEEKVIKREAEVLLNNVDKIDNFSLICASLDMENDAIKRLGDYLKNKDDNLIMLF 797

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 K    ++V  + +     A  +  L  +    G GGG+  +AQ   P  N    
Sbjct: 798 FRPLDNKLVGTVMVGKKLISKGITAKKIVDLIGERFN-GKGGGKDTLAQISLPKTN---- 852

Query: 888 AIAGVASFLKK 898
            I  +  FLK+
Sbjct: 853 -IEEIKGFLKE 862


>gi|307637915|gb|ADN80365.1| Alanyl-tRNA synthetase [Helicobacter pylori 908]
 gi|325998103|gb|ADZ50311.1| Alanyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 847

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/891 (36%), Positives = 485/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFEHCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G  +       +
Sbjct: 458 -----AKALGFFDSGFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKGDEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERFEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKILLKNN--DVIAGINKLKESVKNSQK-------APVP 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E   ++   V 
Sbjct: 737 MDLPVEKIHGVSLVVGVVEQGD---IKEMVDRLKSKHERLLAMVFKKENEH-ITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAALNLAKN 839


>gi|421855|pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana  (fragment)
          Length = 989

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/968 (31%), Positives = 465/968 (48%), Gaps = 107/968 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
              +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 47  AKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKL 106

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 107 SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 166

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCG
Sbjct: 167 GLPTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCG 224

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 225 PCTEIHYDRI-GNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 283

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+
Sbjct: 284 ERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRT 343

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL
Sbjct: 344 LSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTEL 403

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+
Sbjct: 404 KEHEKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDL 462

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN+A+EE R R+R+       G                     
Sbjct: 463 TQLMAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIV-----------------M 504

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S +KAI      +E + +   V +V   T F
Sbjct: 505 DADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSF 564

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G      + +VQ    G  +H   +  E G +     ++  +DY+
Sbjct: 565 YAEQGGQIFDTGLIEGSFGTFNVCNVQI-FGGFVLHIGYLSKETGEVSVGDKVICKVDYE 623

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  
Sbjct: 624 RRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESI 683

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V ++     +A    G  A+ G  Y D VRVVS+           E  + 
Sbjct: 684 VNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEW 743

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK 743
            + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      + +++
Sbjct: 744 SLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVE 803

Query: 744 SLA-----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             +           S LK              ++  ++  +  E RK Q   A++ L+ +
Sbjct: 804 DASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKS 863

Query: 783 VE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           V+       S         +  +   +D+  ++  +  + +K    I++        KA 
Sbjct: 864 VKLATEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAV 923

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGNKADQ 887
           V   V E   D+F  +D+       LG       P           +A   G + ++   
Sbjct: 924 VCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQGTDASQVQA 975

Query: 888 AIAGVASF 895
           A+   +SF
Sbjct: 976 ALDMASSF 983


>gi|313471498|sp|B9FSH5|SYAP_ORYSJ RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|222635304|gb|EEE65436.1| hypothetical protein OsJ_20798 [Oryza sativa Japonica Group]
          Length = 932

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/926 (34%), Positives = 497/926 (53%), Gaps = 70/926 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +  +IR  FL+F+   GH++LPSSSL+P +DPT+  T +GM+ FK IF G+E       T
Sbjct: 36  SGDAIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCAT 94

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKC+R     ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI  AW+L TKEF L  
Sbjct: 95  TSQKCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPP 150

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+I+V+ +D+EAF +W    G+  ++I R+  +DNFW+   TGPCGPCSEI++D    
Sbjct: 151 ERLWISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYDFYPE 210

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  N
Sbjct: 211 -RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPN 269

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL   +I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGY
Sbjct: 270 NYETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGY 329

Query: 300 VLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           V+RR++RR +   RL+G             +  L     +      P++   +  I   L
Sbjct: 330 VVRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGEL 389

Query: 352 RSEDERFGKTLDRGLV-------LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           + E+ RF +TL+RG                + G    L+G   F LYDT+G P++I  +I
Sbjct: 390 QREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEI 449

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+  +D+  F+  +E QR +++A    +      +    + +    T+F+GYD L 
Sbjct: 450 SGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGYDSL- 505

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +++VK ++  G  V     G  VE+  D+TPFYAE+
Sbjct: 506 ----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPFYAES 543

Query: 525 GGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           GGQ+GD G     G         ++I DVQK    IFVH   +++G +     +   +D 
Sbjct: 544 GGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDAAVDA 603

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R+    +H+ATHLL  AL +I+GS  SQ GS +  D LRFD    +P++  EL  IE 
Sbjct: 604 KLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELMKIES 663

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  ++    + T++M+ +DA  +GA A+ G KY ++VRVV V        S  LCGGT
Sbjct: 664 LVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVPG-----VSMELCGGT 718

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T EI    I+SE  I +G+RRIEA+ G     ++  +D  ++ L S LKV   +V 
Sbjct: 719 HVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKAEDVN 778

Query: 758 GRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSV 812
           GRVE I EE R  + ++   + K+ +       +K   ++    ++    +VD+  LKS 
Sbjct: 779 GRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADGLKSA 838

Query: 813 MDALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            + L   ++    +++G S  + K S++   +  ++     A       AK+ GGGGG G
Sbjct: 839 AEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIAKLCGGGGG-G 897

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P+ AQ+GG        A+      +
Sbjct: 898 KPNFAQAGGRKPENLPGALEKARDEI 923


>gi|163754032|ref|ZP_02161155.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1]
 gi|161326246|gb|EDP97572.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1]
          Length = 870

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/920 (36%), Positives = 500/920 (54%), Gaps = 73/920 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FLEFF+   H+++PS+ ++  NDPTLMF NSGM PFK  F G   P    
Sbjct: 1   MKS-QDIRAKFLEFFKSKTHQIVPSAPMVTKNDPTLMFVNSGMAPFKEYFLGNGTPKSNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +
Sbjct: 60  IADTQKCLRVSGKHNDLEEVGYDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYGI 119

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+  LY+TV++  +        EA+ LWK+I  +  ++I+     DNFW M E GPCGPC
Sbjct: 120 DKDILYVTVFEGSDEDGLKLDQEAYDLWKEI--VPEERILMGNKADNFWEMGEQGPCGPC 177

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + E     +PG    + +  + +EIWNLVFMQ+ ++  +    LP   +DTGM
Sbjct: 178 SEIHVDIRSEEEKAKIPGADLVNMDHPQVVEIWNLVFMQYNRKADKSLEKLPAQHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ+  +NYD D+F  LI+  E +T +KY  N    V  RVI DH+R+ SF I
Sbjct: 238 GFERLCMVLQDVKSNYDTDVFTPLIREIETITNVKYGTNEKVDVAIRVIADHVRAVSFSI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N  RGYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL + K 
Sbjct: 298 ADGQLPSNNTRGYVIRRILRRAVRYGFTFLNKKEPFIYRLVDVLDNKMGKAFPELKEQKQ 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           LI+  ++ E++ F +TLD+GLVLLD V+ ++   ++++G   F+L DT+G P D+ + IL
Sbjct: 358 LIQNVIKEEEQSFLRTLDQGLVLLDRVIENVN-GKVVSGKKVFELKDTYGFPEDLTELIL 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL   +   F+ AL+ Q+   R       +      W  L E     +F+GYDLL  
Sbjct: 417 RERGLTY-NEEEFDAALKIQQEGGRKA-----TAIQADDWVVLLEDEEE-EFVGYDLLEV 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RK+  +K                            G + ++VF+ TPFY E G
Sbjct: 470 DVRLTRYRKIETKK---------------------------EGVQYQLVFNMTPFYPEGG 502

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GD G     +G  + + D +K+   + +H  I +    +    L   +D + R + +
Sbjct: 503 GQVGDKGYVETSNGDVIYVLDTKKE-NNLIIH--ITKNLPKKLNEPLRAVVDKKQRERTA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL  ILG+HV Q GS +    LRFD +H   +T  EL+ +E+ VN  I 
Sbjct: 560 ANHTATHLLHQALREILGTHVEQKGSAVHSKYLRFDFSHFSKLTVEELRDVENFVNSRIE 619

Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             LP+   R    E+A+A GA AL G KY D VR +          S  LCGGTHV +T 
Sbjct: 620 GKLPLEEKRNRPVEEALADGALALFGEKYGDTVRSIRFGK------SIELCGGTHVQNTA 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I    I SE ++ AGIRRIEAIT    +      +     +   L  +  + V  V ++
Sbjct: 674 DIWHFKIKSEGAVAAGIRRIEAITYDATKEFYFENNRAYYEIKDVLN-NPKDAVKAVTDL 732

Query: 764 WEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKK 819
            +E  KL  Q+ +  +    N++    +++ D+N +  +  +VD  +  +K++   L  +
Sbjct: 733 KDENAKLRKQIENLLKDKAKNLKGELKNELKDINGVQFLAKQVDLDQNGIKNLAFELGGE 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           I++ + +    + E K  +   ++++L+    F+A  + R   K++ GGGG G+P  A +
Sbjct: 793 IKN-LFLFFATATENKVMLTCYISKELVSERGFDAGKVVRELGKLIHGGGG-GQPFFATA 850

Query: 878 GGPNGNKADQAIAGVASFLK 897
           GG N     +AI  V  ++K
Sbjct: 851 GGKNPGGIPKAIERVKEYVK 870


>gi|251773418|gb|EES53967.1| alanyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 884

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/875 (38%), Positives = 476/875 (54%), Gaps = 46/875 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M ++  IR +F  FF+  GH  +PSSSLIP  DPTL+FTN+GMVPFK+ F G E P    
Sbjct: 1   MDSLR-IRNSFHGFFEGVGHRRVPSSSLIPPGDPTLLFTNAGMVPFKDAFLGTEPPPAPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             ++Q+CVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI  AW+ LTK   L
Sbjct: 60  CVSIQRCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAIAFAWEYLTKTLGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
               L++TV+ +D+EA  LW+ ++G+   +I+R+   DNFW M  TGPCGPCSEI  DQG
Sbjct: 120 SPSVLWVTVFTDDDEAASLWQSVAGVDPSRIVRLGEKDNFWQMGNTGPCGPCSEILVDQG 179

Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                G P      + +RY+EIWNLVFMQ+++ +      LP+ SIDTGMGLER+A+VLQ
Sbjct: 180 SAFSCGRPTCAVGCDCDRYLEIWNLVFMQYDRNDAGILTPLPRPSIDTGMGLERLASVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
              +N++ DLF  L++A  + T + Y   +G     +RVI DH+R+S+FL+ +G++P+NE
Sbjct: 240 GSQSNFETDLFLPLMEAIGKKTRIPYGRGQGEKDFAYRVIADHVRASTFLVWEGLVPSNE 299

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR +RRAM ++  L    P +  L       M + YPEL      +   L SE+
Sbjct: 300 GRGYVLRRFIRRAMQFSLDLALPTPFLPDLSRRFAELMAAPYPELAAGMDRVVTVLASEE 359

Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ERF KTL+ GL L+  +     +  + +L G+  F LYDTHGLP+D++ D     G+  +
Sbjct: 360 ERFMKTLETGLPLVQELARSARERGETVLTGEELFWLYDTHGLPVDVVGDWAAPLGVT-L 418

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F   + EQ+ + R    G  +                 +F GY+ L          
Sbjct: 419 DTEGFAVRMGEQKEQGRRSWTGSRAS----FPLPASRLSSPVRFEGYERLESP------- 467

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + +  +      V+    G+++  V D +PFY E GGQ+GD G 
Sbjct: 468 ----------------ARLLLLASGESEVQSVREGEEIWAVTDVSPFYPEGGGQVGDQGR 511

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +  G  + I+   +   G       V  G++    ++ L +D   R    ++H+ATHLL
Sbjct: 512 LVAPGGIVSISGAYRPYPGWIALRGKVLSGVVTQGETVQLQVDRSLRLGARVHHTATHLL 571

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           H AL  +LGSHV Q GS + PD LRFD +H  PIT  +++ IE  VN  I +  PV    
Sbjct: 572 HAALRKVLGSHVRQAGSLVLPDRLRFDFSHGAPITDGQIEEIEGMVNRWIGEGAPVEISE 631

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            N+ DA+ASGA A    KY DRVRVV +        S  LCGGTH  ST EI   +I+SE
Sbjct: 632 KNKADALASGAMAFFDEKYGDRVRVVEIPG-----MSVELCGGTHALSTSEIGSFFILSE 686

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
           S + AG RRIEA+ G  A     G   +L  +A  LKVS G ++ R+     E  +++  
Sbjct: 687 SGVAAGTRRIEAVAGAAATRTAAGWRAELHRIAGDLKVSPGRILDRIAAEKREREEIEKE 746

Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            ++ K     L+          + +V  +  ++   D  +L+  MD L+ +I SG ++L 
Sbjct: 747 LSRSKSRLFDLETQSLLDESMMVGEVRILVAVVESRDLADLRLRMDVLKGRIPSGAVILA 806

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           G + + +  +L   T DL   F      R  A+ L
Sbjct: 807 GKAGDDRVLLLGWATPDLEKTFPVNTWVRSMAQTL 841


>gi|120403625|ref|YP_953454.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|205830159|sp|A1T8E8|SYA_MYCVP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119956443|gb|ABM13448.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 898

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/915 (33%), Positives = 465/915 (50%), Gaps = 72/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P +   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT      
Sbjct: 60  ASVQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVEAG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY +D+EA   W++++GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGFDPERLWATVYLDDDEAIGYWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G      G P ++E+  RYIEIWNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEYGIEGGPEANED--RYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL +  I     +    Y      + V +R+I DH R+++ +I
Sbjct: 234 VERVACLLQGVDNVYETDLLRPAIDLVAGIAPRGYGQGVHEDDVRYRIIADHSRTAAIII 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
            DG+ P NEGRGYVLRR++RR +  A+LLG  +P+M  L+  +   M  +YPEL      
Sbjct: 294 GDGVSPGNEGRGYVLRRLLRRIIRAAKLLGVDDPIMAELMATVRDAMSPSYPELAADFDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+    +E+  F +TL  G  L D     +     E L+G  AF L+DT+G P+++  ++
Sbjct: 354 IQRIAVAEETAFNRTLASGSKLFDDAARATKASGAEKLSGRDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                L+ +D   F   + EQR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 AAEADLS-VDEEGFRALMAEQRQRAKADAAARKQAHADLSAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV------SGQKVEVVFDQT 518
                                    + +  I   G+ V          + ++VE++ D++
Sbjct: 472 ----------------------SSEARILGIFVDGKRVPVVAHTGREGAQERVELILDRS 509

Query: 519 PFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           PFYAE+GGQ+ D G   G G     +  +TDVQK A+ ++ H   VE G      ++V  
Sbjct: 510 PFYAESGGQIADEGTVTGTGASETAKAAVTDVQKIAKTLWAHRINVESGEFVEGDTVVAA 569

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D + R   +  HS TH++H AL  +LG +  Q GS   P  LRFD      +T  +   
Sbjct: 570 VDPRWRHGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRSQ 629

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE+  N  +  +  V +     + A A GA AL G  Y D VRVV +    GG  S  LC
Sbjct: 630 IEEVTNQAVEADFEVHSFTTELDKAKAMGAMALFGENYPDEVRVVEI----GGPFSLELC 685

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV S+ +I  + I+ ESS+ +G+RR+EA  G  +  HL  +   +  LAS LKV   
Sbjct: 686 GGTHVRSSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSE 745

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIIS-EVDSKE 808
            V  RV  + E+ R  +    + +L               +I DV  ++  ++  +   +
Sbjct: 746 EVPARVATLVEKLRAAEKELDRLRLAGARSAAVNAAAGAEQIGDVRLVAQRMAGGISGAD 805

Query: 809 LKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
           L+S++  ++ K+ S   ++ L+          ++ V     DR   A +L ++    +  
Sbjct: 806 LRSLVGEIRGKLGSDPAVVALIAEGDNDSVPFVVAVNPAAQDRGVRADELVKVMGAAVN- 864

Query: 866 GGGGGRPHMAQSGGP 880
           G GGG+  +AQ  G 
Sbjct: 865 GRGGGKADLAQGSGK 879


>gi|297748879|gb|ADI51425.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749759|gb|ADI52437.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 924

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/889 (37%), Positives = 493/889 (55%), Gaps = 48/889 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 50  MLS-NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 108

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 109 ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNF 168

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 169 DPDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 226

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 227 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAE 286

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  R
Sbjct: 287 TETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTER 346

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E 
Sbjct: 347 GYVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEH 406

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +      A ID+ +
Sbjct: 407 FFKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNYA-IDMDT 465

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R ++       ++ ++  L +    ++FIGYD L    F         
Sbjct: 466 FEKLEVEAKERSRKNTKKTK-NDSDSVFQDL-DPTNTSEFIGYDTLSCDTF--------- 514

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +
Sbjct: 515 --------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCE 560

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL
Sbjct: 561 SGTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKAL 620

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   
Sbjct: 621 EMTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYS 680

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++
Sbjct: 681 DVMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAV 734

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A 
Sbjct: 735 ATGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVAD 794

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 795 LENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 854

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ  
Sbjct: 855 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQGS 901


>gi|308183349|ref|YP_003927476.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308065534|gb|ADO07426.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 847

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/898 (35%), Positives = 478/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLR 
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRH 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 456 ---CCAKALGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGKDIENLQAALNLAKN 839


>gi|146299654|ref|YP_001194245.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|205830093|sp|A5FIP9|SYA_FLAJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|146154072|gb|ABQ04926.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/937 (34%), Positives = 482/937 (51%), Gaps = 98/937 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  FL+FF+  GH ++PS+ ++  +DPTLMF NSGM  FK  F G   P    
Sbjct: 1   MKS-QDVRKQFLDFFESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSPR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +
Sbjct: 60  IADTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKI 119

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY++V++         D+EA+ +WK +  +  D+II     DNFW M + GPCGPC
Sbjct: 120 PKENLYVSVFEGSKEDNVPFDQEAWDIWKTL--IDEDRIILGNKKDNFWEMGDQGPCGPC 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + + +  G    + +  + +EIWN VFM+F ++       LP   +DTGM
Sbjct: 178 SEIHVDLRSAEEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVD 277
           G ER+   LQ KT+NYD D+F  LI+  E +TG KY  N++           +  RV+ D
Sbjct: 238 GFERLCMALQGKTSNYDTDVFMPLIREIETITGAKYTTNDVTGISEEQNKMNIAIRVVAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG LP+N G GYV+RRI+RRA+ Y    LG  EP +  L+  L  +MG +
Sbjct: 298 HVRAVAFAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQMGDS 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PE+   K L    +R E+  F KTLD+GL+LLD V+ +    + ++G  AF+LYDT+G 
Sbjct: 358 FPEIRTQKALCSNVIREEENSFLKTLDQGLILLDAVILN-NTGDTIDGKKAFELYDTYGF 416

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   IL  RGL  +D   F + L+ Q+ R+RA S       T   W  + E     +
Sbjct: 417 PIDLTALILSERGLK-LDEEGFQEQLQLQKERSRAASK-----VTAGDWNVIVED-DIQE 469

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GYD L     + + R+                           VE    G+  ++VF+
Sbjct: 470 FVGYDRLSQQVKITKYRR---------------------------VESVKDGEIFQLVFN 502

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            TPFY E+GGQ GD G        +      KK     +H  + +        +    +D
Sbjct: 503 ATPFYGESGGQTGDKGYLEAQNGDIVYIIDTKKENNQTIH--LTQSLPENITGTFNAVVD 560

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R + S NHSATHLLH  L  ILG+H+ Q GS +    LRFD +H   +T  EL  +E
Sbjct: 561 ANQRAKTSSNHSATHLLHQGLRKILGTHIEQKGSMVRNASLRFDFSHFSKVTDEELLEVE 620

Query: 637 DNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           + VN  I ++LP +  R + +E A+  GA AL G KY D VR +          S  LCG
Sbjct: 621 NFVNARIRESLPLIEKRAIPKEQALEDGAIALFGEKYGDLVRTIKFG------DSVELCG 674

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV++T +I    IVSE ++ AGIRRIEAIT + A+ +   Q   L  +   LK +Q  
Sbjct: 675 GTHVANTSDIWHFKIVSEGAVAAGIRRIEAITSEAAKEYFESQAVSLAEIKEALKNAQDP 734

Query: 756 VVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKS 811
           V   +  + +E  +L  QL    +    N++     ++ ++N +  +  +VD   +  K 
Sbjct: 735 V-KSILALQDENAQLKKQLEALLKDKAKNMKADLAKELQEINGVQFLAKQVDLNPEGAKD 793

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGG 869
           +   L     + + ++   + E K  +   ++++++     NA  + R            
Sbjct: 794 LAYELGG-SYNNLFVVFATAHEGKPMLTCYISKEIVASKNLNAGQVVREL---------- 842

Query: 870 GR---------PHMAQSGGPNGNKADQAIAGVASFLK 897
           G+         P  A +GG N +   +A+A    F+K
Sbjct: 843 GKYIQGGGGGQPFFATAGGKNVDGIGEALAKAVDFVK 879


>gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata]
 gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata]
          Length = 955

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/968 (31%), Positives = 461/968 (47%), Gaps = 107/968 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
              +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 13  ARRVRDTYVDFFKGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 73  TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 132

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W +   L + +++     DNFW M +TGPCG
Sbjct: 133 GLPTDRIYATYFGGDEKAGLQPDNEARDIWLQF--LPSGRVLPFGCKDNFWEMGDTGPCG 190

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 191 PCTEIHYDRV-GNRDAAYLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 249

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+
Sbjct: 250 ERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARAYSGKVGPEDDDRVDMAYRVVADHIRT 309

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL
Sbjct: 310 LSFAIADGSRPGNEGREYVLRRILRRAVRYGKQILKAEEGFFNGLVSSVIRVMGDVFTEL 369

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I E ++ E+  F KTL +G+           +   L+G+ AF L+DT+G PLD+
Sbjct: 370 KEHEKKITEIIKEEEASFCKTLVKGIEKFQKA-EQAVQGNTLSGEDAFVLWDTYGFPLDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   R L  +D+  FN+A+EE R R+R+       G                     
Sbjct: 429 TQLMAEERRL-LVDVEGFNKAMEEARERSRSAQNKQAGGAIV-----------------M 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S +KAI      +E   +   V +V   T F
Sbjct: 471 DADATSTLHKTGVSATDDSFKYIWFQDHESELKAIYTGSTFLESLAATDNVGLVLGSTSF 530

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--GILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G      + +VQ    G  VH   + +  G +     ++  +DY+
Sbjct: 531 YAEQGGQIFDTGLIEGSFGTFNVCNVQI-FGGFVVHIGYLSKDAGEVSVGDKVICKVDYE 589

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L+ AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  
Sbjct: 590 RRKLIAPNHTCTHMLNFALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESI 649

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V ++     +A    G  A+ G  Y D VRVVS+           E  + 
Sbjct: 650 VNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRQVEDLLADPENNEW 709

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK 743
            + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      + +++
Sbjct: 710 SLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVE 769

Query: 744 SLA-----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             +           S LK              ++  ++  +  E RK Q   A++ L+ +
Sbjct: 770 DASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRAKIASLQNEVRKAQKKIAEQNLKKS 829

Query: 783 VE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           V+       S         +  +   +D+  ++  +  + +K    I++        KA 
Sbjct: 830 VKVATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAV 889

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGNKADQ 887
           V   V E   D+F  +D+       LG       P           +A   G + ++   
Sbjct: 890 VCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQGTDASQVQA 941

Query: 888 AIAGVASF 895
           A+   ASF
Sbjct: 942 ALDMAASF 949


>gi|313205146|ref|YP_004043803.1| alanyL-tRNA synthetase [Paludibacter propionicigenes WB4]
 gi|312444462|gb|ADQ80818.1| alanyl-tRNA synthetase [Paludibacter propionicigenes WB4]
          Length = 869

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/918 (36%), Positives = 486/918 (52%), Gaps = 72/918 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +FL+FF   GH+++PS+ ++  +DPTLMFTN+GM  FKNI  G +   Y  V
Sbjct: 1   MTSQEIRQSFLDFFASKGHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ LT+   LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLTEVLKLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EA  +W +   L   +II     DNFW M +TGPCGPCS
Sbjct: 121 KDRLYVTVFEGYAPEGLERDDEAAAIWAQF--LPEHRIINGNKKDNFWEMGDTGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        GL   +    + IEIWN VFMQ+ ++       LP   IDTGMG
Sbjct: 179 EIHIDIRDNDERAKIDGLTLVNGSHPQVIEIWNNVFMQYNRKADGSLEGLPAKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287
            ER+   +Q   +NYD D+F  +I    +V G +Y  +  V+   RVI DH+R+ +F I 
Sbjct: 239 FERLCMAMQGVQSNYDTDVFTPIIAEIGRVCGAEYGKDEKVDIAMRVIADHIRTIAFSIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y    LG     M  L+  L   MG AYPEL+  K L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRHAFMYKLITVLSENMGKAYPELLSQKTL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           IE+ ++ E+E F +TL+ G+ LLD V++         + G VAF LYDT G PLD+ + I
Sbjct: 359 IEKVIKEEEESFLRTLETGIKLLDKVMADSKAAAKTEIEGKVAFTLYDTFGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L       ++I  FN  +++Q+ RAR       + T    W +++E  G ++F+GYD   
Sbjct: 419 LRENNFT-VNIDEFNSEMQKQKERARNA-----AATETGDWVTVRE--GDSEFVGYDFNE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +                              +  ++V  +TPFYAE 
Sbjct: 471 ADTEILRYRKVKQKNQ----------------------------EYYQIVLSKTPFYAEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G    D   + I D +K+   + VH A   +       +   TID + R+   
Sbjct: 503 GGQVGDCGTLKSDHGSIDIIDTKKE-NNLAVHIA--NKLPEDVTETFTATIDIEKRKATE 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHSATHLLH AL  +LG+HV Q GS ++PD LRFD +H + +T  E++++E   N  I 
Sbjct: 560 CNHSATHLLHEALREVLGTHVEQKGSFVSPDALRFDFSHFQKLTKEEIRAVEAIANRKIR 619

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N P+   R     +A A GA AL G KY + VRV+          S  LCGGTHVS+TG
Sbjct: 620 ENYPLQERRETPIAEAQAMGAMALFGEKYGETVRVIQFGS------SVELCGGTHVSATG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L+ +V+ESSI AGIRRIEAITG+     L  Q E +      L  +  +V+  +  +
Sbjct: 674 NIGLVRVVAESSIAAGIRRIEAITGKAVEELLDKQQETIGEAKELLNNAP-DVISAIRRL 732

Query: 764 WEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQKK 819
            EE   L+        +  +++ D    +   V     I     + + + K++   ++  
Sbjct: 733 SEESADLKKQVEAFVHEKIMSLRDKLLAEATIVKGFKVIQYEGSLTADQTKTLAFQIRNV 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               +  + G   + K S+ +++++DL+    NA ++AR +AK + GGGG G+P  A +G
Sbjct: 793 QAEKLFFVAGCVADGKPSLTVLLSDDLVAGGLNATNIAREAAKEIQGGGG-GQPFFASAG 851

Query: 879 GPNGNKADQAIAGVASFL 896
           G N     +AIA     L
Sbjct: 852 GKNLAGIQKAIAKALEAL 869


>gi|15807291|ref|NP_296021.1| alanyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|20532268|sp|Q9RS27|SYA_DEIRA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|6460111|gb|AAF11848.1|AE002062_1 alanyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 890

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/920 (36%), Positives = 494/920 (53%), Gaps = 66/920 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
             + IR  +L FF+  GH  LPS S I   DPT +FT +GM PFK  F G     +    
Sbjct: 6   TTAEIRERYLYFFETKGHLRLPSHSTIAP-DPTTLFTVAGMQPFKENFMGAPAVFDGQPS 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + VTT QKCVR G    D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT  +
Sbjct: 65  KRVTTAQKCVRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIHWAWEFLTGPE 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
              +D+ ++Y+TVY +D+EAF  W +  GL A+ I R   ++NFW          GPCGP
Sbjct: 121 WMGMDKDKMYVTVYKDDDEAFGYWTQDIGLPAEHIHRFDADENFWPANAPLEGPNGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQN-----KQERFILPKMS 223
           CSEI++D+GE       G    + E  R++E+WNLVF Q+++Q+     +     LP  +
Sbjct: 181 CSEIYYDRGENYGDDTWGDYYQTRESARFLEVWNLVFPQYDRQDLDASGQPVLKDLPFKN 240

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+FK +++   +++G  YEG   V+HRV+ +H+RS S
Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFKPIVERVAELSGKPYEGETSVSHRVVAEHIRSVS 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            ++ADG   +N GRGY  R+IMRRA+ +  +LG  EP +  L+  +   MG AYPEL   
Sbjct: 301 MIVADGTAFSNTGRGYTARKIMRRAIRHGYMLGLREPQLYRLVELVVDSMGGAYPELQHN 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +E ++R+E+E+F KTL+ G+  L G+LS + K   L G  AF+LYDT+G P+D+ ++
Sbjct: 361 QSRVEASVRAEEEQFLKTLEGGIKRLGGLLSGMEKGSTLVGKDAFELYDTYGFPVDLTKE 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G++ +D   + ++LE  +  ARA S   G            +   ATQF+GYD  
Sbjct: 421 IAEEYGVS-VDEAGYAESLEHAQEIARAGSK-YGKSELFGGHQEALDGLPATQFVGYDQT 478

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                          V A++  GE +    +G +  VV  QTPFY E
Sbjct: 479 SGD-----------------------GQVLALLSGGERLSHLPAGSEATVVLSQTPFYGE 515

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GG++GDTG    DG    + D QK  +G+F+H  +VE+G L+    +   +  + R  +
Sbjct: 516 GGGEVGDTGRLEWDGGAGIVRDTQKTKQGVFLHDVLVEQGELKEGTRVRGVVSPE-RAAI 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +H+ATHLLH AL  +LG  V Q GS +  D LRFD +H   +++ E+  +E  V+  +
Sbjct: 575 QRHHTATHLLHAALRAVLGGGVQQKGSRVAADQLRFDFSHGAAMSAEEIAQVETLVSRWV 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHV 699
           + N PV  R M   +A A+GA AL G KY D VRVV VE +       V S  LCGG HV
Sbjct: 635 SANFPVSWREMPIAEAKAAGATALFGEKYGDVVRVVRVEGDVDFGGHAVSSMELCGGAHV 694

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           S TG+I    IVS+ ++ AG+RRIEA+ G++A + L G+       A+ L  S   +  R
Sbjct: 695 SRTGDIGAFVIVSDENVAAGVRRIEALAGEQATAWLRGRLNASAKAAALLNTSPEGLEER 754

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSV 812
           V  +  + +  +   A+ + QL               ++      S  +S ++  EL+  
Sbjct: 755 VSGLQGQLKAAEKETAQARRQLAEAQMGGGGSAAQTRELGGFKVASLKLSGIEGNELRGA 814

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            D L  +  + ++++       K  V+    + +    +A  L    A   GG GG GRP
Sbjct: 815 ADKLLDQSGADLVVIAS----DKGLVVKATKDAVAKGAHAGQLVSKLAAAGGGKGG-GRP 869

Query: 873 HMAQSGGPNGNKADQAIAGV 892
            MAQ+G  +   A  A+   
Sbjct: 870 DMAQAGITDAAGALGALDTA 889


>gi|256545145|ref|ZP_05472511.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256399186|gb|EEU12797.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 870

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/915 (35%), Positives = 506/915 (55%), Gaps = 72/915 (7%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++ +R  +L FF  K  H +L S SLIP +D +L+  N+GM P K  FTG++K      T
Sbjct: 6   MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDESLLLINAGMAPLKKYFTGEKKMKNNRAT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + Q+C+R G    D++ VG T RH TFFEMLGNFSFG YFK  AI  A++ LT   ++D+
Sbjct: 66  SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTVNLEIDK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
             L+++VY+ D+EAF +W    G++ D+I+R    DNFW + E GPCGP SEIF D+G  
Sbjct: 122 NLLWVSVYENDDEAFDIWHDEIGIAKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGIE 180

Query: 183 IP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                    PG +++ +R++E+WNLVF QF +   +E   L   +IDTGMGLERMA VLQ
Sbjct: 181 KAVDENDNKPG-NDDSDRFMEVWNLVFTQFNKNANKEYIPLAHPNIDTGMGLERMAMVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296
            K N +++D+ +++I+  E+++  KY+ N  + ++ RVI DH ++ +F+++DGI P+NE 
Sbjct: 240 NKDNIFEVDVNQNIIKEIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           RGYVLRR++RRA  + +LLG     +  ++  +       Y EL   +  I   +  E+E
Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSIVDCVIDSYKVEYDELTNNREKIINIIEKEEE 359

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F KT+D GL +L+  +  L ++   IL G  AFKLYDT+G PLD+ ++IL    L  +D
Sbjct: 360 NFQKTIDSGLDILNSYIKELKENNKDILKGKDAFKLYDTYGFPLDLTKEILDENDLK-VD 418

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F++ +E QR+ AR         + E I     +++  T F+GY+             
Sbjct: 419 TKEFDEYMENQRNLARNARKSDAGWSLESINV---DEFKQTDFVGYENFE---------- 465

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                        ++S +  +    E V     G K  +V D+T FYAE GGQ+ DTG  
Sbjct: 466 -------------INSNIIGLFDSKEKVNFIKKGHKGIIVSDKTSFYAEGGGQVADTGFI 512

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I D  + ++ +VQKK + + +H+  VE G L +  + +  ++ Q R  ++ NH+ATHLL 
Sbjct: 513 ITDDAKARVYNVQKKKD-VILHYVEVEEGKLES-CNALFKVNKQRRLDITRNHTATHLLD 570

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  +L   V Q GS +    LRFD T+   +T  E+K IED VN+ I + LPV   IM
Sbjct: 571 QALRNLLSDEVKQAGSLVDEYKLRFDFTYPNALTKDEIKKIEDEVNEKIREQLPVKKEIM 630

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           + +++   GA  L   KY D VRVVSV       +S  LCGG HV+++ EI++  I+ ES
Sbjct: 631 SYKESEKLGAIGLFEDKYKDMVRVVSV-----SDYSKELCGGCHVNNSSEILMFKIIQES 685

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S  +GIRRIEAITG++   +L    E + S++  LK +  N++ R + + EE ++L+   
Sbjct: 686 SAASGIRRIEAITGKKVYEYLNNNIELINSISDELKTNPKNILSRAKSLNEEIKQLKDDI 745

Query: 775 AKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            K K + N +D+          I  +N + H     D   L++  + ++ K +  II+  
Sbjct: 746 QKLK-EFNEKDIYKDMESEVKDINGINLLVHKFDNEDLDTLRNFENRIKDKYKDLIIVFA 804

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV-------LGGGGGGGRPHMAQSGGPN 881
            + K+ K      V++ L D++NA  + +  +K+                 + AQ+GG +
Sbjct: 805 TV-KDNKIIFTASVSDSLTDKYNAGKIVKEVSKITGGNGGGKK--------NFAQAGGKD 855

Query: 882 GNKADQAIAGVASFL 896
            +K D+A+  V   +
Sbjct: 856 ISKLDEALEKVYDLI 870


>gi|168000843|ref|XP_001753125.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695824|gb|EDQ82166.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 927

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/919 (36%), Positives = 498/919 (54%), Gaps = 65/919 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEF+   GH++LPSSSL+P +DPT++ T +GM+ FK IF GQ    Y   TT QK
Sbjct: 39  IRKRFLEFYAARGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGQVPRSYPCATTTQK 97

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
            VR     ND++NVGRT RHHTFFEMLGNFSFG YFK +AI  AW+L T+EF L   R++
Sbjct: 98  VVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKRQAIAWAWELATQEFKLPLERVW 153

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V+++D+EAF +W+   G+  ++I R+   DNFWS   TGPCGPCSE++FD      G 
Sbjct: 154 VSVFEDDDEAFAIWRDEVGVPVERIKRMGAEDNFWSSGATGPCGPCSEMYFDFHPE-RGT 212

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                 +  R+IE +NLVFMQ+ + +  +   L   +IDTG+GLERMA +LQ+  NNY+ 
Sbjct: 213 DDADLNDDSRFIEFYNLVFMQYNRTDDGQLEPLKNKNIDTGLGLERMAQILQQVPNNYET 272

Query: 247 DLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL   +I  +  +  + Y+  +       +VI DH R+  +LI+DG+ P+N GRGY++RR
Sbjct: 273 DLIYPIIARAAALANVDYQSADDRVKTYLKVIGDHTRAVVYLISDGVYPSNIGRGYIVRR 332

Query: 304 IMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           ++RR +   RLLG             +  +            P + Q K+ I   L+ E+
Sbjct: 333 LIRRVVRMGRLLGIRGDGQGNQEGAFLPTVAEVAVAMSKDVDPNVEQQKIKIYNELKREE 392

Query: 356 ERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            RF +TL++G  LL+ +L+            L+G   F+LYDT G P++I +++   RG+
Sbjct: 393 LRFVQTLEKGEKLLEELLAEALEKRGTDTPCLSGKDVFRLYDTFGFPVEITEEVASERGV 452

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F   +E QR +++A    +           +  +   T+F+GYD L       
Sbjct: 453 T-VDLAGFESEMEIQRKQSQAAHNVIKLAVG-GAAQEMLAQVPETEFLGYDDL------- 503

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             SS + AI+  GE + EA  G++VE++ D+TPFYAE+GGQ+GD
Sbjct: 504 ----------------TSSSSILAILANGEALGEASEGEEVELLLDRTPFYAESGGQVGD 547

Query: 531 TGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G      GD   +       K  G F H  +V+ GI++  + +   +D   R +  I+H
Sbjct: 548 HGYLRVFGGDSEAVVKVKDVVKEAGRFRHIGVVQDGIVKVGLGVEAEVDPVLRTRAQIHH 607

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL  +LGS VSQ GS ++ D LRFD    + +T AE+  +E  VN+ I   +
Sbjct: 608 TATHLLQAALKNVLGSDVSQAGSLVSFDRLRFDFNLPRAMTDAEINKVEMLVNEWIGMGV 667

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           PV +  M    A   GA A+ G KY ++VRV+SV        S  LCGGTHV +  EI  
Sbjct: 668 PVTSEEMAIAAAKEKGAIAMFGEKYGEQVRVISVPG-----ISMELCGGTHVRNIAEIRG 722

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           L I+SE  I +G+RRIEA+ G     ++  +D  +K L++ LKV   ++ GRV  + EE 
Sbjct: 723 LKIMSEQGIASGVRRIEAVAGNAFIEYINARDAVVKQLSASLKVKADDLAGRVVGLQEEV 782

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIAD--VNFMSHIISEVDSKELKSVMDALQKKI 820
           R  +   A  +++L V            I D     +   + ++D++ LK+  + L  K+
Sbjct: 783 RASRNEAAALRVELAVAKAEALLSTATSIGDSSTRVLVASLDKIDAESLKAAAEHLLAKL 842

Query: 821 QSGIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                ++VG S  + K S++   +  ++     A       AK+ GGGGG GRP+ AQ+G
Sbjct: 843 GDPAAVVVGSSPGDGKVSLVATFSPSVVKQGIQAGKFVGTIAKICGGGGG-GRPNFAQAG 901

Query: 879 GPNGNKADQAIAGVASFLK 897
           G    K D+A+      LK
Sbjct: 902 GRQPEKLDEALEKAREDLK 920


>gi|184200992|ref|YP_001855199.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|205830074|sp|B2GIA1|SYA_KOCRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|183581222|dbj|BAG29693.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 895

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/922 (34%), Positives = 481/922 (52%), Gaps = 65/922 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I   +L +F+   H ++PS+SL+    P  MFT +GMVPF   F GQE P YQ  T+VQ
Sbjct: 5   EITQRWLSYFEARDHHVVPSASLVSQQ-PGAMFTIAGMVPFIPYFLGQETPPYQRATSVQ 63

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDL 120
           KC+R      D+D VG+T RH TFF+M GNFSFG YFK +AI +AW+LLT       F L
Sbjct: 64  KCIRT----LDIDEVGKTARHGTFFQMAGNFSFGDYFKSQAIPMAWELLTTAPEQGGFGL 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  RL++TVY+ D+E++ LW    GL A +I R+  ++N+W   + GP GP SEIF+D+G
Sbjct: 120 DPERLWVTVYEGDQESYDLWHDTVGLPAQRIQRMGRDENYWDTGQPGPAGPDSEIFYDRG 179

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMGLERMAT 235
               G   G + + +RYIEIWNLVFMQ+++             LP+ +IDTG+G+ER+A 
Sbjct: 180 PRY-GKDGGPAVDDDRYIEIWNLVFMQYQRGEGNGKDYEILGELPRKNIDTGLGVERLAM 238

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFLI 286
           +LQ   N Y+ D  + ++ A+ +++G  Y G         ++ V  RV+ DH+RSS  LI
Sbjct: 239 LLQGVENFYETDQVRPVLDAAAKLSGRTYHGAEKAGEQGYDDDVRMRVVADHVRSSLMLI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P NEGRGY+LRR++RRA+   RLLG TEP +  LLP     M   YP + +    
Sbjct: 299 ADGVTPGNEGRGYILRRLLRRAVRAMRLLGVTEPCLPVLLPESRDAMKGVYPVVAEDFER 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDIL 405
           I     +E+  F KT++ G   L+  +     ++  L+G  AF L+DT G P+D+  ++ 
Sbjct: 359 ISRIAYAEERAFLKTIESGTTRLEHAVEVAKGEQRALSGADAFALHDTFGFPIDLTLEMA 418

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              G++ +D  +F   + EQR RA+  +        +            ++F GY  L  
Sbjct: 419 EEAGVS-VDETAFRALMAEQRQRAQEDARAKKGALADLSELRRMLDDHGSEFTGYTELVT 477

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   + V+AI+  G  V  A  G+ VEVV ++TPFYAEAG
Sbjct: 478 P-----------------------TTVRAILSGGVSVPAASEGEHVEVVLERTPFYAEAG 514

Query: 526 GQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ  D G     DG +L + DVQ+  +G+ VH   V  G +     +   +D + R    
Sbjct: 515 GQAADVGTIDSSDGAQLTVEDVQQPVKGLSVHKVTVSAGQVLVGDEVTARVDSRRRHDGE 574

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH++H AL  +LG    Q GS      LRFD +H + + + +++ IE   N  I 
Sbjct: 575 AAHSGTHVIHAALHDVLGPDAVQRGSFNKEGYLRFDFSHGEALNAGQIQEIEQIANTAIR 634

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  VVTR M   +A   GA +L G KY D VRVV +     G  S  LCGGTHV ST +
Sbjct: 635 DDFEVVTREMPLAEAKKLGAMSLFGEKYGDEVRVVEM----NGPWSRELCGGTHVGSTSQ 690

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           +  L +VSE S+ +G RR+EA+ G  + +HL  +   +  L   LKV S   +  R+   
Sbjct: 691 LGSLSLVSEQSVGSGNRRVEALVGLNSFNHLAAERTLVNQLTGMLKVQSSAELPERLAAT 750

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDALQ 817
            ++ ++ +   A  + Q              ++  V  + H   E+  +  L+S+   L+
Sbjct: 751 LDKLKETERQLAGLRQQQLQAQAGQLARDAERVGPVTAVLHDAGEIASADALRSLALDLR 810

Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            ++ S   +  + G++ ++   V+ V          A  L R +A  LGGGGG G+P +A
Sbjct: 811 TRLGSEPAVAAVTGVANDRPLVVVAVNDAARDAGLAAGQLVRTAATTLGGGGG-GKPDVA 869

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q GG +  K   A+A +   ++
Sbjct: 870 QGGGSDAAKIPDALAAIRRQIQ 891


>gi|109946744|ref|YP_663972.1| alanyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|122973456|sp|Q17ZF3|SYA_HELAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109713965|emb|CAJ98973.1| alaS [Helicobacter acinonychis str. Sheeba]
          Length = 847

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/891 (36%), Positives = 482/891 (54%), Gaps = 55/891 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG    P     T+ 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EAFKLW+K   +  DKI ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAFKLWEKF--VPTDKIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RR++ +  L+G  E  +  ++  +C +    +  L ++K ++ +    E++RF +TL+
Sbjct: 299 ILRRSLRHGYLMGLKEAFLYRVVGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL  ++I +G +AFKLYDT G PLD+  D+L   G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRNHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKRNNAD---FSTILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                S  +       + + E    Q+V V+ ++TPFYAE GG +GD G  + D     +
Sbjct: 456 ---CFSQALGFFDSDFKEMTETNPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAAL 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+     +  +  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFS-LLKIKKALKKGDQVIAQV-SNERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +HSK +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +++  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNARILLKNN--DLIAGINKLKESVKNSQK-------ASVP 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL    I   + +  ++ + D   +K ++D L+ K +  + M+     E + S+   V 
Sbjct: 737 MDLPIETINGTSVVVGVVEQGD---IKEMIDRLKNKHEKLLAMVFKQENE-RISLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L GG GGGR   A +GG +  K   A+    +
Sbjct: 793 NAP---IKAHVWANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAALNAAKN 839


>gi|21910594|ref|NP_664862.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|21904795|gb|AAM79665.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
          Length = 825

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/872 (34%), Positives = 461/872 (52%), Gaps = 68/872 (7%)

Query: 46  FKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105
            K  F G   P    +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ 
Sbjct: 1   MKKYFDGSVIPENPRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDE 56

Query: 106 AIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163
           AI+  ++LLT    FD  + +LY+T Y +D++++  W    G+    ++ I   DNFW +
Sbjct: 57  AIEWGFELLTSPDWFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEI 113

Query: 164 AETGPCGPCSEIFFDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQE 215
              GP GP +EIFFD+GE       G        E +RYIEIWN+V  QF       + E
Sbjct: 114 GA-GPSGPDTEIFFDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSE 172

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRV 274
              LP  +IDTG GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + ++ +V
Sbjct: 173 YKELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKV 232

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           I DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG  E  +  L+P +   M 
Sbjct: 233 IADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIME 292

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYD 392
           S YPE+++ +  IE+ ++ E+E F +T+D G   LD +L+ L     + L G   FKLYD
Sbjct: 293 SYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYD 352

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS   +          
Sbjct: 353 TYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--------- 402

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
                            +    ++ +      T  + S +  I+   E  E    GQ   
Sbjct: 403 -----------------ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQ-AL 444

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           +VF QTPFYAE GGQ+ DTG    D      ++ DVQK   G  +H   V    L    +
Sbjct: 445 LVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLSVGTN 503

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
             L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + +++ 
Sbjct: 504 YTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNE 563

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           EL+ IE  VN+ I   L + T   + E A   GA AL G KY   VRVV +     G +S
Sbjct: 564 ELRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYS 618

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A+ +K
Sbjct: 619 VELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVK 678

Query: 751 VSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV 804
             Q  +   +V+ + +  R LQ  +A+ K +              +   V F++  +   
Sbjct: 679 APQLKDAAAKVQALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVA 738

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           D+  L++  D  ++K  S +++LV    EK   ++   T+D     +A ++ +  A ++ 
Sbjct: 739 DAGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKELAPIVA 794

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+P MA +GG + +K  + +A VA  +
Sbjct: 795 -GRGGGKPDMAMAGGSDASKIAELLAAVAEIV 825


>gi|297284439|ref|XP_002808351.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA synthetase,
           cytoplasmic-like [Macaca mulatta]
          Length = 967

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/975 (32%), Positives = 482/975 (49%), Gaps = 101/975 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-----LLGYTEPLMMHLLPALCTEMGS 335
           + +  +ADG  P N GRG++LR   R A  + +     + G+ +PL+  LLP      G 
Sbjct: 304 TITVALADGGRPDNTGRGFLLREPPRPARRFFKRGXGIVFGFIQPLI--LLPLC---QGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G
Sbjct: 359 AFPELKRDPDMVKDIVNEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYG 418

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   
Sbjct: 419 FPVDLTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIE 470

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +     L       K +  +      +       + V A+ ++   VEE  +GQ+  VV 
Sbjct: 471 ELRARGLEVTDDSPKYNYHLDFSGSYV--FENTVATVMALRREKMFVEEVSTGQECGVVL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           D+T FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+   
Sbjct: 529 DKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLKVGD 586

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++
Sbjct: 587 QVRLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMST 645

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------ 682
            ++K  E+  N++I    PV T+      A A  G  A+    Y D VRVVS+       
Sbjct: 646 QQIKKAEEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSEL 705

Query: 683 -----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                   G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L  
Sbjct: 706 LDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRK 765

Query: 738 QDEKLKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNV 783
            +   KSL+   + +K       +V   + ++ E        +++K +L    + L+  +
Sbjct: 766 AESLKKSLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVM 825

Query: 784 EDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +DL     ADV                     +  + S   +K L   +   +       
Sbjct: 826 DDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTS 885

Query: 825 IMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            ML  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N 
Sbjct: 886 AMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNI 944

Query: 883 NKADQAIAGVASFLK 897
               +A+    SF +
Sbjct: 945 GCLQEALQLATSFAQ 959


>gi|225010000|ref|ZP_03700472.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005479|gb|EEG43429.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C]
          Length = 879

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/932 (36%), Positives = 488/932 (52%), Gaps = 91/932 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL FF+   H+++PSS ++  +DPTLMFTN+GM PFK  F G   P  Q 
Sbjct: 1   MKS-QDIRAQFLAFFKDKNHQIVPSSPMVIKDDPTLMFTNAGMNPFKPYFLGNTLPKNQR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-------GYFKERAIQLAWDL 113
           V   QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG       GYFK+ AIQ AW L
Sbjct: 60  VADTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGVAKNNVDGYFKQEAIQWAWSL 119

Query: 114 LTKEFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           L   F +D   LY+TV++  +         EA  LWK I  +   +I+     DNFW M 
Sbjct: 120 LVDVFKIDPNSLYVTVFEGSKDADQLEMDAEALSLWKAI--VPESQILFGNKKDNFWEMG 177

Query: 165 ETGPCGPCSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           + GPCGPCSEI  D    + +    G    + +  + +EIWNLVFMQF ++       LP
Sbjct: 178 DQGPCGPCSEIHVDIRTPEEKASVSGASLVNMDHPQVVEIWNLVFMQFNRKANGILEPLP 237

Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDH 278
              +DTGMG ER+  VLQ   +NYD D+F  +I+  E ++G  Y  +    +  RVI DH
Sbjct: 238 AKHVDTGMGFERLCMVLQGVQSNYDTDVFTPIIKEIEVISGHSYGKDTPTDIAIRVIADH 297

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F IADG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  L   MG A+
Sbjct: 298 IRAVAFSIADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMFKLVQVLSKTMGDAF 357

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL   K LI+  ++ E++ F +TL++GL LLD ++    KD++L G+ AF+LYDT+G P
Sbjct: 358 PELNSQKQLIQNVIKEEEQSFLRTLEQGLQLLDTLI-LTAKDKVLAGEKAFELYDTYGFP 416

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   IL  RG A +D   F ++++ Q+ R+RA S       +++ W  L E     +F
Sbjct: 417 IDLTALILSERGYA-LDQSGFEKSMQVQKQRSRAASE-----VSKEDWEVLLED-DTQEF 469

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           IGYDLL     + + RKV  +K                            G+  ++VF+ 
Sbjct: 470 IGYDLLETQVKIAKYRKVTSKK---------------------------EGEMYQLVFNL 502

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFY E GGQ+GD G        +      KK     +H +       R   S   ++D 
Sbjct: 503 TPFYPEGGGQVGDKGYLEAPNGDVTYIVDTKKENNEIIHFSSTLPKDPRV--SFKASVDK 560

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R + S NH+ATHLLH AL  ILG+HV+Q GS +    LRFD +H   +TS +LK IED
Sbjct: 561 KQRDRTSKNHTATHLLHQALRAILGTHVAQKGSAVHSKYLRFDFSHFSKVTSEQLKEIED 620

Query: 638 NVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
            VN  I  ++P+          A A GA AL G KY D VR +         HS  LCGG
Sbjct: 621 YVNARIDGHIPLEEHRNRPLVQAQADGAMALFGEKYGDTVRSIRFG------HSIELCGG 674

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV +TG+I    I  ES++ +GIRRIEAIT    + + +  D+ L+ + + L+++   V
Sbjct: 675 THVKNTGDIWQFKITGESAVASGIRRIEAITSDAVKDYYLKTDQTLQQVLNQLQINTDPV 734

Query: 757 VGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSV 812
              + ++ EE+ +L+  L   +++   +V         ++N +  + +EV  D+  +K +
Sbjct: 735 TA-ITKLQEEFAQLKTTLTALQKEKAGDVGKSLAASFEEINGVRFLAAEVSLDASAMKDL 793

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLS------AKVLG 864
              L  +  +   +L+G   E KA +   ++++LL     NA  + +             
Sbjct: 794 CFELAAQSPNT-FLLLGAQYEGKALLACYISKELLTEKSLNAGQVVKTLGQYIQGGGGGQ 852

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  P  A +GG N     +AIA    F+
Sbjct: 853 -------PFFATAGGKNPEGIAEAIAHAKDFI 877


>gi|1673366|emb|CAA80381.1| cytosolic tRNA-Ala synthetase [Arabidopsis thaliana]
          Length = 955

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/968 (31%), Positives = 465/968 (48%), Gaps = 107/968 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
              +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 13  AKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 73  SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 132

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCG
Sbjct: 133 GLPTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCG 190

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 191 PCTEIHYDRI-GNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 249

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+
Sbjct: 250 ERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRT 309

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL
Sbjct: 310 LSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTEL 369

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+
Sbjct: 370 KEHEKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN+A+EE R R+R+       G                     
Sbjct: 429 TQLMAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIV-----------------M 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S +KAI      +E + +   V +V   T F
Sbjct: 471 DADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSF 530

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G      + +VQ    G  +H   +  E G +     ++  +DY+
Sbjct: 531 YAEQGGQIFDTGLIEGSFGTFNVCNVQI-FGGFVLHIGYLSKETGEVSVGDKVICKVDYE 589

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  
Sbjct: 590 RRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESI 649

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V ++     +A    G  A+ G  Y D VRVVS+           E  + 
Sbjct: 650 VNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEAYPDPVRVVSIGRKVEDLLADPENNEW 709

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK 743
            + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      + +++
Sbjct: 710 SLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVE 769

Query: 744 SLA-----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             +           S LK              ++  ++  +  E RK Q   A++ L+ +
Sbjct: 770 DASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKS 829

Query: 783 VE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           V+       S         +  +   +D+  ++  +  + +K    I++        KA 
Sbjct: 830 VKLATEAAESAASDGKTFCIIQLDVGLDAAAVQEAVSKVMEKKGMSIMVFSTDESTNKAV 889

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNGNKADQ 887
           V   V E   D+F  +D+       LG       P           +A   G + ++   
Sbjct: 890 VCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQGTDASQVQA 941

Query: 888 AIAGVASF 895
           A+   +SF
Sbjct: 942 ALDMASSF 949


>gi|229093459|ref|ZP_04224562.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228689930|gb|EEL43734.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 791

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/823 (37%), Positives = 473/823 (57%), Gaps = 53/823 (6%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFS G YFKE AI  AW+ LT  K    D+  L +T++ EDEEAF +W +  G+  +
Sbjct: 1   MLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKE 60

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP----GGLPGSSEEGERYIEIWNLVF 205
           +IIR+   +NFW + E GP GP +EIF+D+GE               E ERY+E+WNLVF
Sbjct: 61  RIIRL--EENFWDIGE-GPSGPNTEIFYDRGEAYGNDFSDPELYPGGENERYLEVWNLVF 117

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY- 264
            QF          LPK +IDTGMGLERM +++Q+   N+D DLF  +I A+E ++G KY 
Sbjct: 118 SQFNHNPDGSYTPLPKKNIDTGMGLERMTSIVQDVPTNFDTDLFMPMIGATETISGEKYR 177

Query: 265 --EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
             +    +  +VI DH+R+ +F + DG LP+NEGRGYVLRR++RRA+ Y++ L    P M
Sbjct: 178 NGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRGYVLRRLLRRAVRYSKKLNINRPFM 237

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDE 380
             L+P +   M   YPE+++ K  I + +++E+ERF +TL  G  +L  V++     K  
Sbjct: 238 FELVPVVGEVMKDFYPEVLEKKDFIAKVVKNEEERFHETLHDGEAILAEVIAKAKEEKTT 297

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           +++G  AF+LYDT+G P+++ ++     G+  +D   F   +E+QR RARA    + S  
Sbjct: 298 VISGVDAFRLYDTYGFPIELTEEYAEEAGMT-VDHEGFENEMEKQRERARAARQDVDSMQ 356

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            +     L E   A++F+GY  +                          S V A+V+ GE
Sbjct: 357 VQG--GVLGEVKVASEFVGYGTVAT-----------------------ESNVVALVKNGE 391

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
             +    G++ +++ D TPFYAE+GGQ+ D G  + DG+++ + DVQK   G  +H  +V
Sbjct: 392 YTDSLQVGEEGQLMLDVTPFYAESGGQIADRGYLLADGVKVLVKDVQKAPNGQNLHQVVV 451

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E G L+ + ++   ID +NR  +  NH+ATHLLH AL  +LG+HV+Q GS +T + LRFD
Sbjct: 452 EEGTLKKDAAVKAIIDTKNRSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLRFD 511

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +H   + + EL+ IE  VN+ I +++ V       E+A   GA AL G KY D VRVV 
Sbjct: 512 FSHFGQVQADELEKIERIVNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQ 571

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V     G +S  LCGG HV +T  I +  IV+ES I AG RRIEA+TG+ A   +  Q  
Sbjct: 572 V-----GDYSLELCGGCHVDNTASIGIFKIVAESGIGAGTRRIEAVTGKSAYELMNDQVG 626

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVN 795
            LK  A  +K +  +++ RV+ ++ E ++LQ  +     +L+  +      S   +  VN
Sbjct: 627 LLKEAAGKMKTNPKDILTRVDGLFAEVKQLQKENESLAAKLSNIEAGNLTDSVMTVDGVN 686

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVD 854
            ++  ++  D   L+++MD L+ K++S +++L  +  + K ++L  VT+DL+   ++A  
Sbjct: 687 VLAAKVNVADMNNLRTMMDDLKNKLESAVVVLASV-NDDKVNILAGVTKDLISQGYHAGK 745

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L +  A   GGGGG GRP MAQ+GG N  + ++A+A V  ++K
Sbjct: 746 LVKEVASRCGGGGG-GRPDMAQAGGKNPAQVEEALAFVQEYVK 787


>gi|196003434|ref|XP_002111584.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens]
 gi|190585483|gb|EDV25551.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens]
          Length = 959

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/966 (30%), Positives = 473/966 (48%), Gaps = 88/966 (9%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
               IR  F++FF +   H  +PSSS +P +DPTL+F N+GM  FK I+ G   P     
Sbjct: 6   TSEQIRQMFIDFFVEKYNHLFVPSSSTVPHDDPTLLFANAGMNQFKPIYLGTVDPKSEMA 65

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FK+ +I  AW+LL  
Sbjct: 66  TYRRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKKESIDWAWELLVD 125

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   R+Y+T +  DE        E   +W    G++ ++++     DNFW M +TGP
Sbjct: 126 VYKMPAERMYVTYFGGDEKSGLQPDYETKNIWLAK-GIAPERVLPFGLQDNFWEMGDTGP 184

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D+           + +    +E+WNLVF QF ++  +    LP+  +DTG 
Sbjct: 185 CGPCTEIHYDRIGG-RDAAYLVNMDDPEVLEVWNLVFTQFNREADKSLRPLPRKYVDTGA 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHL 279
           GLER+ +V+Q   +NYD DLFK L      +TG +               + +RV+ DH 
Sbjct: 244 GLERVTSVIQGVMSNYDTDLFKPLFDKIRSLTGAREYRGLLGDADVDGIDMAYRVLADHA 303

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  I+DG  P + GRGYVLRRI+RRA+ YA   L     +   L+     ++G A+P
Sbjct: 304 RTLTIAISDGGKPDSTGRGYVLRRILRRAVRYATEKLDAKPGMFAQLVNVAVEKLGGAFP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +   ++ + +  E+ +F KTL RG  + +  +    KD +L G VA++LYDT+G P+
Sbjct: 364 EVTKDPQMVIDIINEEEAQFLKTLSRGRRMFEREVLKA-KDGVLPGFVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +   +GL+ ID+  + +A ++ +  +R    G  +G  + +   +          
Sbjct: 423 DLTHIMAEEKGLS-IDMDGYEKAKQDSQELSR----GKDTGVDDTVALGIHAIKDLEDLA 477

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                   K+  E              +G+++ + A+  +   V E ++G +  ++ D++
Sbjct: 478 IPLTDTSPKYNYE-----SDGNGGYTIHGIAAKISALRYEKSFVNEVLTGSRCGIILDKS 532

Query: 519 PFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            FYAE GGQ+ D G  +    +    ++TDVQ    G +V H  +  G  +   ++ L +
Sbjct: 533 CFYAEQGGQIYDLGFIVNSDDEDTEFKVTDVQ--IMGGYVLHVGITEGTFKVGDTVQLQV 590

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + RR +  NH+ATH+L+ AL   LG    Q GS + PD LRFD T    +T+ ++K+ 
Sbjct: 591 DSERRRTVMNNHTATHILNFALREQLGE-ADQRGSLVAPDRLRFDFTAKGAMTTQQIKAT 649

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV------ 688
           E+ V +II Q   V  +      A A  G   +    Y D VR+VSV      +      
Sbjct: 650 EEIVGNIIEQKQQVFAKDATLAKASAIQGLRQVFAETYPDPVRIVSVGVSVDDLLEDPTG 709

Query: 689 -----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                 S   CGGTH+ ++G++    I SE  I  GIRRI A+TG  A+  +    E L 
Sbjct: 710 PSGLKTSVEFCGGTHLKNSGDMEAFVISSEEPIAKGIRRIIALTGSDAKKKVTKLQESLS 769

Query: 744 SLASFLKVSQGNVVGRVEEIWE-----------EYRKLQLIHAKRKLQLNVEDLS----- 787
            L    +  Q ++  +  +I E           ++RK +L    +K++  + D+      
Sbjct: 770 ELMKLGRADQTSLKAKKRQITELNDSIAAVTLQQWRKDELRETLKKVKKTIIDIEKAADS 829

Query: 788 ------CHKIADV----NFMSHIIS----EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                   K  ++      +S ++      + SK L S +        +   ML  +  E
Sbjct: 830 KRSQEVVEKAKEIASQSKDLSAVVEVLEAGLSSKVLDSALKQFHSIAPNTAAMLFSVDSE 889

Query: 834 K-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             + + L  V E ++ +  +A D  +    VL  G GGG+P  AQ  G N    + A+  
Sbjct: 890 GRRVTCLCQVPEAIMKKGLSASDWVKSVMNVLE-GKGGGKPTSAQGSGTNVAGLNNALNL 948

Query: 892 VASFLK 897
              F K
Sbjct: 949 AKEFAK 954


>gi|288801454|ref|ZP_06406907.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331665|gb|EFC70150.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 872

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/920 (34%), Positives = 496/920 (53%), Gaps = 77/920 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++ +FF   GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G + P  +  
Sbjct: 1   MTANEIRESYKQFFASKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRR 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+ L     LD
Sbjct: 61  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAIDYAWEYLVDVLHLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D++A   W+K   L  D II    +DNFW M +TGPCGPCS
Sbjct: 121 PKDLYVTVFEGSKEDNIARDDDAASFWRK--HLPEDHIINGNKHDNFWEMGDTGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +++  + IEIWN+VFMQF +++      L    IDTGMG
Sbjct: 179 EIHLDSRTPEEKLKVKGSELVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLSMNVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+   LQ K +NYD D+F+ +I+   +++   Y  +N   V  RVI DHLR+ +F IA
Sbjct: 239 FERLVRALQGKNSNYDTDIFQPIIKEICKLSHKNYGEDNAVDVAMRVIADHLRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ YA   L   E  +  L+P L  EMG AYPEL   + L
Sbjct: 299 DGQLPSNAKAGYVIRRILRRAIRYAYTFLHQREAFIYRLIPTLIAEMGQAYPELTAQREL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL++G+ +L+  +  L K+    L+G  AF+L+DT+G PLD+ + I
Sbjct: 359 IGRVIKEEEDSFLRTLEKGISMLNDAIEVLKKEGKSELDGVQAFRLFDTYGFPLDLTELI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
                +  ++   F++ + +Q+ RAR  ++          W  L    G  QF+GYD   
Sbjct: 419 CREHQIT-VNAEQFDEEMRKQKERARNAAV-----VESTDWVELAA--GEQQFVGYDYTE 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R+V  +K                                E+V + TPFY E 
Sbjct: 471 YECQILRYRQVTQKKNTY----------------------------FELVLNNTPFYGEM 502

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GD G  + +   ++I D  K+  G  +H  IV+      + S +  +D  NR   +
Sbjct: 503 GGQVGDKGVLVNEDETIEIIDT-KRENGQSIH--IVKTLPKDVKASFMACVDTDNRNASA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHL+ +AL  +LG HV Q GS ++ + LRFD +H + +T  +L+ +E  VN +I 
Sbjct: 560 ANHTATHLVDYALKQVLGDHVEQKGSYVSTESLRFDFSHFQKVTDEQLREVERLVNQLIR 619

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           ++ P+        E+A   GA ++ G KY D+VRVV          S   CGG H +STG
Sbjct: 620 EDYPMDEHRDTPIEEAREMGAVSIFGEKYGDKVRVVRFGP------SCEFCGGIHATSTG 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            + +  IV+E+S+ AG+RRIEAITG+     +   ++ ++++ +    +  ++ G VE+ 
Sbjct: 674 RLGMFKIVTETSVAAGVRRIEAITGENCEELVYSLEDTIRAVKALFN-NTKDLKGAVEKF 732

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            EE   ++    K K Q NVE L         +   +  ++ ++  +D+ + K ++  ++
Sbjct: 733 IEENEAMKKEVEKFKAQ-NVERLKEFLLKGAKQQNGITIVTGVLP-IDASDAKDLVFKVR 790

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +   S ++ ++G +   K  + +++++DL+     NA  + R +AK++ GG GGG+PH A
Sbjct: 791 EANPSHLLCVIGTTAGNKPLLSVMLSDDLVKEHNLNAGAMIREAAKLIKGG-GGGQPHYA 849

Query: 876 QSGGPNGNKADQAIAGVASF 895
            +GG +    + AI  V   
Sbjct: 850 SAGGKDLEGLNAAIEKVIEL 869


>gi|213966126|ref|ZP_03394313.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951224|gb|EEB62619.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 886

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/909 (36%), Positives = 482/909 (53%), Gaps = 59/909 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  F++ F K GH  +PS+SL+  +DP L+F N+GMVPFK  F G E P +   
Sbjct: 1   MQTHEIRNRFIQHFVKAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGNETPDFSTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  TSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWSLLTGAVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F +   +L++TVY +D+EA  +W +  G+  ++I R    DN+WSM   GPCGPCSEIF
Sbjct: 116 GFGIPAEKLWVTVYLDDDEAHDIWHEKVGVPEERIQRRGMADNYWSMGVPGPCGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           +D+G    G   G   + +RYIEIWNLVFM+ E+         +    LPK +IDTGMG+
Sbjct: 176 YDRGPEY-GADGGPEADEDRYIEIWNLVFMENERGEGTGKDSFEILGPLPKKNIDTGMGI 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ DL + +I  +E++TG KY  N  + +  RVI DH R+   L+ D
Sbjct: 235 ERVAFLLQGVDNVYETDLLRPVIDEAEKLTGSKYSSNHQDNIRFRVIADHSRTGLMLMLD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY+LRR++RR +  ARLLG   P++  L+      M  +YPE+ +    I 
Sbjct: 295 GVTPSNSDRGYILRRLLRRIIRSARLLGANGPVLEKLIGIAAETMTPSYPEIAENWNRIR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E++ F KTL  G  L +   +        +L+G  AF L+DTHG P+D+  ++  
Sbjct: 355 RVAVAEEKAFTKTLSAGEELFERAATKAKAEGKTVLSGHDAFTLHDTHGFPIDLTIEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  ID   F++ + EQR+RA+A S       T+   +        T F GYD L   
Sbjct: 415 EAGLT-IDREEFDREMAEQRARAKADSQAKKQSHTDLHVYREFIDEHPTSFTGYDRLAD- 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S +  I+  G+    A  G ++EV+ D+TP YAEAGG
Sbjct: 473 ----------------------ESTILGIIADGQKQSFAAEGDEIEVILDRTPLYAEAGG 510

Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           QL D G  + D G  + I DVQK  + +++H  IV  G     +S    +D Q R     
Sbjct: 511 QLADRGRIVTDSGAVVHINDVQKVGKKLWLHKGIVTAGEFTPGVSAEALVDEQWRHGARQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ATHL+H AL  +LG  V+Q GS   P  LRFD  + + +T  +L+ IE   N+ +  
Sbjct: 571 AHTATHLIHGALRQVLGDTVTQAGSMNKPGYLRFDFKYGEQLTPEQLREIEQITNEAVDN 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +  V T  M  E+A A+GA AL    Y D VRVV V    GG  S  LCGGTHVS + +I
Sbjct: 631 DWAVNTAEMPLEEAKATGAMALFNENYGDIVRVVEV----GGPFSIELCGGTHVSHSSQI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----E 761
             + ++ ESS+ +G+RRIEA +G  +  +L  +    + LA+  K     +  R+    E
Sbjct: 687 GPVAVLGESSVGSGVRRIEAYSGMDSFRYLSTERLLAERLATEFKAPSAELPDRIAALAE 746

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-CHKIADVNFMS-HIISEVDSKELKSVMDALQKK 819
           ++    ++L    A + L      L     I DV ++   +    + K+++S+ + L K+
Sbjct: 747 KLKAAEKQLADFKAGQLLANAASHLESARTIGDVTYLGLKLPDGTEMKDIRSLANDLAKR 806

Query: 820 IQSGIIMLVGISK-EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +     ++  IS    K      V+++ ++R   A DL +L    +GG GG G+P MAQ 
Sbjct: 807 LGDRPSVIALISNASGKVPFAASVSDEAVNRGIKAGDLVKLMGAEVGGKGG-GKPAMAQG 865

Query: 878 GGPNGNKAD 886
            G + +  D
Sbjct: 866 SGSDASGID 874


>gi|300781084|ref|ZP_07090938.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532791|gb|EFK53852.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 893

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/927 (34%), Positives = 482/927 (51%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
                IR  F + F   GH  +PS+SLI  +DPTL+F N+GMVPFK  F GQ+ P +   
Sbjct: 1   MQTHEIRDRFTQHFVDAGHIPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFDSG 59

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-- 117
             T++QKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AI+LAW LLT    
Sbjct: 60  TATSIQKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIELAWSLLTNSQA 115

Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              F LD  RL++TVY ED+EA ++W+   G+ A++I R+   DNFWSM   GPCGP SE
Sbjct: 116 DGGFGLDPERLWVTVYTEDDEAAEIWENKIGVPAERIQRMGMEDNFWSMGVPGPCGPSSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGM 228
           I++D+G    G   G   +  RY+EIWNLVFM+  +    +         LP  +IDTG+
Sbjct: 176 IYYDRGPEH-GKEGGPIADDNRYMEIWNLVFMESIRGEGDKKGGFEILGELPNKNIDTGL 234

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN------NIVNHRVIVDHLRSS 282
           G+ER+A +LQ   N Y+ DL   +I+A+E++TG  Y         + V  RVI DH R++
Sbjct: 235 GIERLACILQGVDNVYETDLLHPVIEATEKLTGTTYGAGGKEGELSDVRFRVIADHSRTA 294

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             +I DG+ P+NEGRGY+LRR++RR +  ARLLG     +   +  +   M  ++PE+ Q
Sbjct: 295 MMIILDGVTPSNEGRGYILRRLLRRIVRSARLLGAQGTTIETFMNTIMDTMAPSFPEIEQ 354

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
            +  I     +E++ F KTL+ G    D   + +      +L G  AF+L+DT+G P+D+
Sbjct: 355 NRERILRVAVNEEKAFLKTLESGTHRFDEAAATVKGSGQTVLPGGQAFELHDTYGFPIDL 414

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             ++    GL  +D+ +F+ A++EQR RA+A S    +G  ++  +        T+F+G+
Sbjct: 415 TLEMAAEAGLE-VDMAAFDAAMKEQRDRAKADSKAKKTGNIDESLYREWVDAHPTEFVGF 473

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D L                          S V  +V+ GE V E   G +VEV+ D TP 
Sbjct: 474 DTLDHD-----------------------SKVIGLVRGGEKVGEVGQGDEVEVILDITPM 510

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQL D G  +     L + DVQK     ++VH A VE G L    ++   ++   
Sbjct: 511 YAEGGGQLADRGRIVVGDTVLSVHDVQKVGNKKLWVHKATVENGGLDLGQTVRTEVNPTW 570

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+ATHL+H AL  +LG    Q GS   P  LRFD  ++  +TSA+L  I    
Sbjct: 571 RHGARQAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTSAQLDEIAVIA 630

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  +  +  V T   + E A   GA AL G  Y D VRVV +    GG  S  LCGGTHV
Sbjct: 631 NQAVDADFAVNTFETSLERAKEMGAMALFGENYGDEVRVVEI----GGPFSIELCGGTHV 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             + +I  + ++ ESS+ +G RRIEA +G  + +    +      LA  LK     +  R
Sbjct: 687 EHSSQIGPVAVLGESSVGSGARRIEAYSGMDSFAFFSKEAALASGLAEELKTPTDQLPER 746

Query: 760 VEEIWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHII-SEVDSKELKSVM 813
           + ++ E  R  +       K++L     +L      I D+ F++  +   +   +++++ 
Sbjct: 747 IAQLTERLRAAEKEIENLRKKELANQTGELVKQAETIGDIKFLAVKLPDGLTGGDMRTMA 806

Query: 814 DALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
             L+ ++ S   ++++  S + K    +  T   +D+   A     +    +GG GG G+
Sbjct: 807 TDLRGRLGSDPAVIVLASSTDGKVPFAVAATPGAVDKGIKAGQYVGMFGGYVGGKGG-GK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P +AQ  G + +  +     +   + K
Sbjct: 866 PDLAQGSGSDASGIEAGFTALREEIGK 892


>gi|283769383|ref|ZP_06342282.1| alanine--tRNA ligase [Bulleidia extructa W1219]
 gi|283104040|gb|EFC05424.1| alanine--tRNA ligase [Bulleidia extructa W1219]
          Length = 875

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/912 (34%), Positives = 490/912 (53%), Gaps = 61/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             +  R  FL+FF   G  + P +SL+P +DPTL++ N+G+   K  F G++KP+   + 
Sbjct: 7   TGNETRQLFLDFFASKGCMIEPGASLVPHDDPTLLWINAGVAALKPYFDGRKKPISHRIC 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 67  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKVEAITWAWEFLTSKKYIGF 122

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +  RLY+TVY +D+EA   W K+ G+    I +  T DNFW +   GP GP +E+++D+G
Sbjct: 123 EPERLYVTVYPDDQEAIDTWIKV-GMIPSHIRK--TEDNFWEIGR-GPGGPDTELYYDRG 178

Query: 181 ECI-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ----ERFILPKMSIDTGMGLE 231
           E          L     E +RYIE+WN+VF Q++    +    E   LP+ +IDTGMGLE
Sbjct: 179 EKYDPQGKGEELFFQDLENDRYIEVWNIVFSQYDCHPGEMPRSEYPELPQKNIDTGMGLE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGI 290
           R+  ++Q+   N+D DLF  +I A+E++  + Y+     + +RVI DH+R+ +F IADG 
Sbjct: 239 RLVALIQDGQTNFDTDLFLPIIHATEKLASVSYQEEKAKMAYRVIADHIRTVTFAIADGA 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           + +NEGRGY+LRR++RRA+ +   +G  +  M  L+  +   M + YP +++   LI   
Sbjct: 299 MFSNEGRGYILRRVLRRAVRFGLKIGIEKAFMYQLVEVVARNMEAYYPYVVEKIDLIARL 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+E F +TL  G  LL   +     ++ L G+V F+LYDT+G P ++ ++I    G 
Sbjct: 359 VKVEEESFHRTLSMGENLLQSAMEQYQSEKKLPGEVVFRLYDTYGFPFELTKEISFEAGY 418

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D   F   +E+Q+ RAR     + S   +     L      + F+GY          
Sbjct: 419 E-VDEEGFKAQMEDQKKRARQARGEIQSMRGQS--EDLLNFQTESHFVGY---------- 465

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                        + + V+S + A+ + GE +   +   + +VV  +T FYAE+GGQ  D
Sbjct: 466 -------------VQSEVTSKITALFRNGERISSLLG--EGDVVLAETVFYAESGGQCAD 510

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG       ++ ++DVQK   G F+HH   +   L+  M +    D + R     NHS+ 
Sbjct: 511 TGILWLGDHKIYVSDVQKSPNGQFLHHVNSDV-ELKEGMEVKGCFDVKKRELTRANHSSL 569

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG HV+Q GS   PD  RFD  H + ++  +L+ +E+ VN+ I  ++PV 
Sbjct: 570 HLLQAALKKVLGDHVAQAGSYNCPDYARFDFNHFEKMSEEQLREVENLVNEKIMAHIPVT 629

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T I+  E+A  SGA AL   KY D VR+V++     G  S   CGGTHVS+T E+ L +I
Sbjct: 630 TEILPIEEAKKSGATALFDEKYGDFVRIVTM-----GDFSKEFCGGTHVSNTSELGLFHI 684

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRK 769
            SE S+ +GIRRI + T + A  H    ++ LK  AS  K+ + N +  R++ + EE   
Sbjct: 685 ESEESVGSGIRRITSTTKKVALRHFKEMEDYLKESASLFKLKKWNALQDRIQMVLEENMA 744

Query: 770 LQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           LQ     L   K K++         +I  +N +   + + D+  LK     L+ K++ G 
Sbjct: 745 LQHQIKELKDEKMKMESEAVLAKKEEIHGLNVLILELHDQDNAGLKDYAVLLRNKLERGF 804

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L  ++K+K   V     E +    NA  + +  A+ L GG GGG+P +AQSGG   ++
Sbjct: 805 VLLANVTKDKVVYVAAASQEAIAAGVNAGHIVKKVAQ-LTGGHGGGKPDLAQSGGKEVDQ 863

Query: 885 ADQAIAGVASFL 896
              A+  V   L
Sbjct: 864 VKFALESVRKSL 875


>gi|213404528|ref|XP_002173036.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212001083|gb|EEB06743.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 961

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/967 (31%), Positives = 474/967 (49%), Gaps = 94/967 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R+TF+++F+++GH  +PSSS+IP  DPTL+F N+GM  +K IF G   P       
Sbjct: 11  ANKVRSTFIDYFKEHGHTFVPSSSVIPFEDPTLLFANAGMNQYKPIFLGTVDPSSSFAKL 70

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI LAW LLT+ F
Sbjct: 71  KRACNSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIPLAWKLLTEVF 130

Query: 119 DLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L+  +LY+T +   EE        A  +W ++ G+  +++I     DNFW M E GPCG
Sbjct: 131 KLNPDQLYVTYFGGHEESGLGPDLEAKNIWLEM-GIPPERVIPGNLKDNFWEMGEQGPCG 189

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           +++    +EIWN+VFM+F ++       LP   IDTGMG 
Sbjct: 190 PCSEIHYDRIGG-RSVPELVNQDDPNVLEIWNIVFMEFNREKDGSLRPLPNKHIDTGMGF 248

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----GNNIVN-----HRVIVDHLRS 281
           ER+ +V+Q K++NYD DLF  L Q  +++TG +      G + V+     +RV+ DH+R+
Sbjct: 249 ERLVSVVQNKSSNYDTDLFAPLFQKIQELTGARPYEGRMGEDDVDGIDTAYRVVADHVRT 308

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P NEGRGYVLRRI+RR   Y R    T        L   +  +MG  +PE
Sbjct: 309 LTFAISDGGVPNNEGRGYVLRRILRRGARYVRKKFNTPIGDFFSRLALVVAEQMGEFFPE 368

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
           +      ++E L  E+E F +TLDRG  + +   +   K   ++L G   ++LY+T+G P
Sbjct: 369 VRSKLEDVKEILDEEEESFSRTLDRGEKMFEQYAAAAQKTESKMLKGMDVWRLYETYGFP 428

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +    GL  ID+  FN A    +  +R  +   G   T                
Sbjct: 429 VDLTHLMAEEAGLK-IDVEGFNAAQAHSKEISRRAAKAGGDSAT---------------M 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVV 514
           +  D+       K              +  +++ VKA+          E+  +G+ + ++
Sbjct: 473 VTLDIHALGALAKMPEVPKTDDHFKHESGTINATVKALYHPSGFQTSTEKFEAGENIGIL 532

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ  DTG    DG +  ++T+VQ    G  +H    E G L     ++ 
Sbjct: 533 LDRTNFYAEQGGQEYDTGRITIDGKLEFRVTNVQ-VYGGYVLHTGFCEYGSLNVGDEVIC 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   RR L  NH+ TH+L+ AL  +LG  V Q GS ++P+ LRFD +H   ++  EL+
Sbjct: 592 EYDELRRRPLMNNHTVTHILNFALREVLGEGVDQRGSLVSPEKLRFDFSHKAALSIKELE 651

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
            +E+  N  IA+NL V  + +    +   +G  A+ G  Y D VRVV V           
Sbjct: 652 RVENICNQKIAENLRVYAKELPLAISKEIAGLRAVFGEVYPDPVRVVCVGADIDEIIKDP 711

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH---LMGQ 738
             E    +S   CGGTH+  TGEI    I+ ES I  GIRRI A+T   A          
Sbjct: 712 KNEQWRQYSIEFCGGTHLPKTGEIKDFVILEESGIAKGIRRIVAVTAADANQVCRIANEF 771

Query: 739 DEKLKSLASFLKVSQGNVVGRV--------------------------EEIWEEYRKLQL 772
           D++L  LA+     +     ++                          ++  ++ +    
Sbjct: 772 DQRLDRLAAMPHGPEKEAEIKLVTVDLSQLSVSALRKHAMKEKFTKITKQFQDQVKAANA 831

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
              K  ++  V D          F+S +    + K L   +   +K +    + L+  + 
Sbjct: 832 KEQKDAVK-AVADYFEEHPESKFFVSKLNVSPNPKVLNFAISYAKKNLAGKSLYLLASNG 890

Query: 833 E--KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
               K +   +V+++ L +  A + ++  + V+ GG  GG+    Q  G N +K DQAI 
Sbjct: 891 AQPDKVAHACLVSQEALPKVTAQEWSQKVSHVV-GGRCGGKKDSCQGVGTNADKIDQAIE 949

Query: 891 GVASFLK 897
               F +
Sbjct: 950 EAIEFFQ 956


>gi|124024771|ref|YP_001013887.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|205830178|sp|A2BZG2|SYA_PROM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123959839|gb|ABM74622.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 886

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/907 (36%), Positives = 503/907 (55%), Gaps = 53/907 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
             IR  F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++      T+ 
Sbjct: 17  DEIREAFINFFVQHNHQKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRATSS 75

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ + 
Sbjct: 76  QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNPQN 131

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184
           + I+V+ ED EA ++WK++ G+ A++IIR+   DNFWS   TGPCGPCSE++FD    + 
Sbjct: 132 IVISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPEL- 190

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
           G      E+  R+IE +NLVFMQ+ +  +     L    IDTGMGLERMA +LQ+K+NNY
Sbjct: 191 GSDEIDLEDDSRFIEFYNLVFMQYNRDLEGNLEPLANCHIDTGMGLERMAQILQKKSNNY 250

Query: 245 DIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           + DL   LI+A+  +  ++YE     N  + ++I DH R+ + LI DG+  +N GRGY+L
Sbjct: 251 ETDLIFPLIKAAALLAQLEYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGYIL 310

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RR++RR + + RL+G  +P +  L       M +AYP+L++ K +I   L+ E+ RF +T
Sbjct: 311 RRLIRRMIRHGRLVGIVQPFLPQLAEMAIELMKNAYPQLLEKKKIILNELKIEESRFLET 370

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           L+RG  LL  + SH  + ++++G  AF+LYDT+G PL++ ++I   +G++ +DI  F   
Sbjct: 371 LERGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKGIS-VDINGFENE 427

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + +QR RA+  S+ +       I   +   +  T+F GY+ L                  
Sbjct: 428 MAKQRKRAKEASVSIDLTEEGSIEREIS-LFDETRFEGYEKLET---------------- 470

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  +S V  I +  E V++AV G  V+++ ++TPFYAE+GGQ+GD G      + +
Sbjct: 471 -------TSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGIITSQDLEV 523

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + +V+KK   IF+H  IV  G+L    S+ + +    R++ + NH+ATHLL  AL   +
Sbjct: 524 SVENVRKKKN-IFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKLSI 582

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            S VSQ GS ++   LRFD    KP+T  EL+ +E  +N  I ++ P+  + M  ++A+A
Sbjct: 583 DSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEVRINQWINEDHPIQIKTMPIKEAMA 642

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           +GA A+ G KY        V   D    S  LCGGTHV+ T ++    I++E+ I +GIR
Sbjct: 643 AGALAMFGEKY-----GDVVRVVDVPGVSMELCGGTHVTRTSQLGTFKIINETGIASGIR 697

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK--- 778
           RIEAI G     +   +D  +K L+   KV    +V RV  +  E +       K K   
Sbjct: 698 RIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKNDL 757

Query: 779 --LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK---- 832
              +          +     +   +  VD   L+S   +L   +     ++ G       
Sbjct: 758 ALAKALGLASYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQEI 817

Query: 833 EKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + K   +   + DL+ D  +A       AK+ GGGGG GRP++AQ+GG      D A+  
Sbjct: 818 DNKLVFVAAFSPDLVSDGLHAGKFISGVAKMCGGGGG-GRPNLAQAGGSQPQSLDLALEK 876

Query: 892 VASFLKK 898
               L +
Sbjct: 877 ANENLTQ 883


>gi|298207536|ref|YP_003715715.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83850172|gb|EAP88040.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 870

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/929 (35%), Positives = 485/929 (52%), Gaps = 92/929 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR TFLEFF+   H ++ S+ ++  +DPTLMFTN+GM  FK  F G   P    V
Sbjct: 1   MTSQDIRKTFLEFFKSKKHSIVTSAPMVIKDDPTLMFTNAGMNQFKEFFLGNGDPKSSRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + ++
Sbjct: 61  TDTQKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWAWELLTEVYKVN 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  LY+T+++         D EA+  WK    +S D+I+     DNFW M   GPCGPCS
Sbjct: 121 KDNLYVTIFEGDASESLERDTEAYDFWKN--HISEDRILNGNKKDNFWEMGAQGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    +E+  + +EIWNLVFMQF ++       LP   +DTGMG
Sbjct: 179 EIHVDLRSKEEKDKVSGAELVNEDHPQVVEIWNLVFMQFNRKADGSLEKLPAQHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287
            ER+  VLQ+KT+NYD D F  LI+  E +T   Y       +  RVI DH+R+ +F IA
Sbjct: 239 FERLCMVLQDKTSNYDTDAFTPLIKEIETITATTYGSSEKTDIAIRVISDHVRAVAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N G GYV+RRI+RR + Y    L   EP +  L+  L  +MG AYPEL++ + L
Sbjct: 299 DGQLPSNTGAGYVIRRILRRGIRYGFTFLNTKEPFIYKLVKTLTKQMGDAYPELVKQENL 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I   ++ E+  F +TLD+GLVLLD ++    K + ++G  AF+LYDT+G P+D+   IL 
Sbjct: 359 IYNVIKEEESSFLRTLDQGLVLLDNIIEK-SKSKEISGKKAFELYDTYGFPIDLTSLILR 417

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG + ++   F+  L++QR R+R  +           W +L +     +FIGYD L   
Sbjct: 418 ERGFS-LNEAEFDAELKKQRDRSREATKTETGD-----WVTLIDD-AEQEFIGYDHLEAQ 470

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
             +   RK                           VE    G+  ++VF+ TPFYAE GG
Sbjct: 471 VKLTRYRK---------------------------VENKKDGEMYQLVFNLTPFYAEGGG 503

Query: 527 QLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GD G     DG  + I D +K+   + VH    +      E +    +D + R + + 
Sbjct: 504 QVGDKGYLESPDGDVVYIVDTKKE-NNLVVHF--TKNLPKHPEATFKAVVDSKQRMRSAS 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLLH AL ++LG+HV Q GS +    LRFD +H   +++ EL  +ED VN  I +
Sbjct: 561 NHTATHLLHQALRSVLGTHVEQKGSMVHSGNLRFDFSHFSKVSAEELTQVEDFVNARIRE 620

Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            LP+  +  +  + A+  GA AL G KY D VR +          S  LCGGTHV++T E
Sbjct: 621 QLPLEEQRNIPHQKALDEGAIALFGEKYGDAVRTIRFGK------SMELCGGTHVNNTSE 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I+SE ++ +GIRRIEAI+     ++   Q++ L+ + S LK +  + V  V  + 
Sbjct: 675 IRHFKIISEGAVASGIRRIEAISNDAVDTYYAKQNQILEDVKSILK-NPQDTVKAVSSLQ 733

Query: 765 EEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           EE  +L     QL+  K K            I  +N ++  I ++D+  +K +   +  +
Sbjct: 734 EENSELKKQVEQLLKDKAKHLKAELKQELETINGINVLAKEI-DLDAGSMKDLAFEIGGE 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR------ 871
           + + + ++ G +   KA +   ++++L+     NA  + R            G+      
Sbjct: 793 VDN-LFLVFGSNHNGKALLSCYISKNLVAEKDLNAGKIIRDL----------GKHIQGGG 841

Query: 872 ---PHMAQSGGPNGNKADQAIAGVASFLK 897
              P  A +GG   +    A+      +K
Sbjct: 842 GGQPFFATAGGKKPDGISAALQASKDIIK 870


>gi|325109123|ref|YP_004270191.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
 gi|324969391|gb|ADY60169.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305]
          Length = 869

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/915 (35%), Positives = 487/915 (53%), Gaps = 73/915 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FF++ G    PS  L+P NDPT++FT +GM  FKN F G  K  +   
Sbjct: 1   MKTDELRDAYLSFFEEKGCIRRPSDVLVP-NDPTVLFTPAGMNQFKNEFLGIGKLEFTKA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+ NVG T  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 60  TTCQKCLRTG----DIGNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLG 115

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP-----CGPCSE 174
           LD  RL +TVY +D+EAF +W+   GL  ++I R    +NFW            CGPCSE
Sbjct: 116 LDGERLTVTVYLDDDEAFGIWENEIGLPKNRIKREDEYENFWPAGAPTEGPDGVCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I++                G + +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 176 IYYH------------PPTGGKEVEIWNLVFTQFNRVGNPPDNLKPLPMKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
            A VLQ   +N++ID  K L +    V G+KY   G +    R I DH+R+ +  + + +
Sbjct: 224 TAAVLQGVESNFEIDTLKPLCETVGDVLGVKYNFGGEHGRAMRRIADHVRAVTMCVHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP N+ +GYV+R+++RRA+  + L+G  EP++  L+P +   +G  YPEL +    ++  
Sbjct: 284 LPDNKEQGYVVRQLLRRAVLESYLIGKQEPVLHLLVPKVVELLGKPYPELKETVGSVQSA 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           ++ E+  F  T++RGL   +  L       I++G  AF+L+ T G   ++   +     L
Sbjct: 344 IQEEENAFLDTIERGLNRFERCLDGAKSSGIISGKDAFQLHTTDGFLYELTDALAARHNL 403

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D I F++ +EE    + A      S   E    ++++  G T+F+GY+         
Sbjct: 404 K-VDRIGFDKLMEEHGIISNAGKQK--SVMAEGPLDAIRKTSGGTEFLGYEAT------- 453

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQTPFYAEAGGQ 527
                                V  I+ + ++V+E         + VV D+TPFYAE+GGQ
Sbjct: 454 ----------------SAEGKVVGIIAEKQLVDEVTEVGHRDVIAVVIDRTPFYAESGGQ 497

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD G    DGI   + D QK  + +++H   +++G L    +L   +D + R  +   H
Sbjct: 498 VGDIGSLTADGIEFVVQDTQKDGD-LWLHIGHLKQGKLEVGQTLTAEVDGERRDAIRRAH 556

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHL+HHAL   LG + +Q GS +  D LRFD  H KP++  EL+ IED VN  IA   
Sbjct: 557 SATHLMHHALRETLGENATQRGSKVQQDELRFDFAHKKPVSPEELRRIEDMVNSHIANGN 616

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V T +M  EDA A GA AL G KY D VRVVS+     G +S  LCGGTH+S+TG++ +
Sbjct: 617 DVATDLMKIEDARAKGAMALFGEKYPDLVRVVSM-----GDYSIELCGGTHLSNTGQVGV 671

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
             I++E  +  G+RR+ A TG++A      ++E L+ L   LKVS   +++ +V+ +  E
Sbjct: 672 FKIIAEEPVAKGVRRLVAYTGEKAIEESRKKEELLRELMLELKVSAPEDLIRKVQSLQAE 731

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +  +   + +  Q   +++     +  K+ DV  ++     VD   L+   D L+ K +
Sbjct: 732 LKDTKKKLSDQMRQSVGDEVDTLLQNAEKVGDVAVITFQPENVDKDVLRDYADRLRTKQK 791

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           + +  L+    + K ++L  V++DL+    NA D  + +AK++ GG GGGRP +A++GG 
Sbjct: 792 AAV--LLAAEIDGKVALLAAVSKDLVKQGVNASDCVKAAAKLVKGG-GGGRPDLAEAGGK 848

Query: 881 NGNKADQAIAGVASF 895
           + +K  +A+   A F
Sbjct: 849 DPSKISEALKAGAEF 863


>gi|170781160|ref|YP_001709492.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|205830026|sp|B0REK2|SYA_CLAMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|169155728|emb|CAQ00849.1| alanine tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 885

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/928 (32%), Positives = 472/928 (50%), Gaps = 78/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F   GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   
Sbjct: 1   MQTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFARA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VGRT RH TFF+M GNFSFG YFKE+AI  AW+LLT      
Sbjct: 60  TSVQKCIRT----LDIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L++TVY ED+EA + WK+I+GL  ++I  +  + N+W   + GP GPCSEIF
Sbjct: 116 GLGFSPDDLWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+ +         +    LP  +IDTGMGL
Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPTRNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ D  + ++  + +++G +Y  +  + V  R++ DH+RSS  L++D
Sbjct: 235 ERVAFIKQGVENMYETDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSVMLMSD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGY+LRR+MRR +   RL+G        L PA    M +AYPE+      I 
Sbjct: 295 GVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+E F +TL  G  +LD  +  +     E + GD AF L+DT G P+D+  ++  
Sbjct: 355 RLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D  +F++ + EQR+RA+A +    +   +   +S     G T+F GYD L   
Sbjct: 415 ENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELETG 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  ++  G  V+ AV+G   EV+  +T  YAE+GG
Sbjct: 474 -----------------------TTILGLIVGGHSVDHAVAGDIAEVILPETSLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  +G G  L++ DVQK  +G+  H   V  G +    +    +D   RR  +  
Sbjct: 511 QEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTIVDADWRRGATQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q+GS      +R D   ++ ++ A    IED  N  +  +
Sbjct: 571 HSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSPATRSEIEDIANGAVRDD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L VVTR+M  ++A   GA AL G KY D VRVV +    GG  S  LC GTHVSS+ +I 
Sbjct: 631 LQVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V ESS+ +  RRIE++ G+ A   L  +   +  L S LK  +  +  R+ ++ + 
Sbjct: 687 LINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSSLKTPREQLPDRIADLLQN 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820
            +  +   A  + Q   + +        ++  V  +   +  V  + E++ ++  ++++ 
Sbjct: 747 LKTAERRIADFEAQALQQRVPTLLAQGSRVGSVTLIQESLGSVRSADEVRQLVTLVRERA 806

Query: 821 QSGIIMLV-GISKEKKASVLIVVTEDLLD-RFNAVDL----------ARLSAKVLGGGGG 868
            S  +++        K +V++   +   D    A  L                 L     
Sbjct: 807 GSDPVVVALAGDAGGKPTVIVATNQAARDAGAKAGQLARAAAAVLGGGGGGKDDLA---- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  Q GG + +   +A+A V   L
Sbjct: 863 -------QGGGSDVSAIGEALAAVRQAL 883


>gi|332020821|gb|EGI61219.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 1010

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/973 (32%), Positives = 471/973 (48%), Gaps = 88/973 (9%)

Query: 2    SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
             N   IR  +++FF+  GHE + SSS IP +DPTL+FTN+GM  FK IF G   P     
Sbjct: 42   MNAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMA 101

Query: 57   VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +  V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK      AW+ LT 
Sbjct: 102  KWVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKNEICAWAWEFLTD 161

Query: 117  EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
               L   RLY+T +  DE        E   LW  + G+ A  ++     DNFW M ETGP
Sbjct: 162  VLKLPADRLYVTYFGGDEKSGLAPDDECKNLWLSL-GVPASHVLPGNMKDNFWEMGETGP 220

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CGPCSE+ +D+           + +    +EIWNLVF+Q+ ++       LPK  ID G+
Sbjct: 221  CGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQYNRELNGSLKSLPKKHIDCGL 279

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
            GLER+ +V+Q K  NYD D+F  L  A E+ TG                 + +RV+ DH 
Sbjct: 280  GLERLVSVIQNKRANYDTDVFMPLFAAIEEGTGAPPYQGKVGADDVNGIDMAYRVLADHA 339

Query: 280  RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
            R+ +  +ADG +P N GRGYVLRRI+RRA+ YA   L   +     L+  +   +G  +P
Sbjct: 340  RTLTIALADGGVPDNTGRGYVLRRILRRAVRYATEKLNAKQGFFGSLVNVVVDLLGDVFP 399

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            E+ +    I E +  E+ +F KTL RG  LL+  ++ L   + + GDVA++LYDT+G P+
Sbjct: 400  EVRKDPQSIIEIINEEESQFLKTLSRGRNLLNRTIAKLESADTVPGDVAWRLYDTYGFPI 459

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            D+ Q +   +GL  IDI  +    EE + +A+  S     G  ++I F +   +  T+  
Sbjct: 460  DLTQLMTEEKGLK-IDIAGY----EESKKQAQLISQNKAGGVDDQINFDV---HAITELQ 511

Query: 459  GYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
               +       K D KV  + K         +  V A+ +    V+E  SG++V ++ D+
Sbjct: 512  KQGVKPTDDSPKYDYKVTTEIKYKEYEFAPCTGTVIALRRAKTFVDEVSSGEEVGILLDR 571

Query: 518  TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            T FYAE GGQ+ D G  +    +   ++I +VQ +A G  +H   V  G LR    +   
Sbjct: 572  TNFYAEQGGQIYDEGFLVKVDDETTEIRIKNVQIRA-GYVLHIGTVGEGTLRKGDKVHTN 630

Query: 575  IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            +D + RR +  NHSATH+L++AL  +LG+   Q GS + PD LRFD T+  P+T  +L+ 
Sbjct: 631  VDTERRRFVMANHSATHVLNYALRKVLGTKADQKGSLVAPDRLRFDFTNKGPMTGGQLQD 690

Query: 635  IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH---- 689
             E   N++I +N  +  +  N   A    G  A+    Y D VRVVSV      +     
Sbjct: 691  TEQLANNVITENEKIYAKESNLAIAKTIQGLRAMFEETYPDPVRVVSVGIPVENLEKDPL 750

Query: 690  -------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                   S   CGGTH+  T  I    IVSE +I  GIRRI A+TG  A   L       
Sbjct: 751  STAALETSVEFCGGTHLHYTSHIGNFTIVSEDAIAKGIRRIVALTGPEAAKALRTGMLLQ 810

Query: 743  KSLASF--------LKVSQGNVVGRVEEIWEE-----------------YRKLQ--LIHA 775
            + L+ F         + +    V  + E+ EE                  + L+  L   
Sbjct: 811  RQLSQFQASIEDDKSETNSKEYVREIVELTEEISHALIPAYWKDHMRNTLKNLKKSLDDK 870

Query: 776  KRKLQLNVEDLSCHKIADV---NFMSHIISEV-----DSKELKSVMDALQKKIQSGIIML 827
            +R  +  V          +        ++ EV     ++K L   +  ++        +L
Sbjct: 871  ERAAKATVATTVVQTAQSIIESKVGCQVLVEVLEAYSNTKALDQALKKIRAISPETSALL 930

Query: 828  VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
            + I  + KK   L  V +  + +   A +  +     L  G GGG+   AQ+ G N    
Sbjct: 931  ISIDHDVKKIFALSSVPKSAVSKGLKANEWIQAITS-LMQGKGGGKSESAQASGSNIVCL 989

Query: 886  DQAIAGVASFLKK 898
            ++ ++    F  +
Sbjct: 990  NEIVSKANEFADQ 1002


>gi|226356938|ref|YP_002786678.1| alanyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|226318928|gb|ACO46924.1| putative alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 891

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/921 (36%), Positives = 492/921 (53%), Gaps = 67/921 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58
             S IR  FL+FF+  GH  LPS S I   DPT +FT +GM PFK+ F G     +    
Sbjct: 6   TTSQIREKFLQFFESKGHLRLPSHSTIAP-DPTTLFTVAGMQPFKDQFMGAPAVFDGVAN 64

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + VTT QKCVR      D++NVGRT RH T FEM+GNFSFG YFK  AI  AWD LT  +
Sbjct: 65  KRVTTAQKCVRV----PDIENVGRTRRHLTLFEMMGNFSFGDYFKRDAILWAWDFLTGPE 120

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
              +D  ++Y+T+Y +D+EAF  W +  GL A  I R   ++NFW          GPCGP
Sbjct: 121 WMGMDPDKMYVTIYKDDDEAFGYWTQEVGLDASHIHRFDADENFWPANAPLEGPNGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQN---KQE--RFILPKMS 223
           CSEI++D+G             + E  R++E+WNLVF Q+++Q+           LP  +
Sbjct: 181 CSEIYYDRGSNYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDPAEDGTPVLKDLPFKN 240

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+F+ ++    +++G  YEG   V+HRV+ +H+RS  
Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFRPIVDKVAELSGKPYEGEISVSHRVVAEHMRSVC 300

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            ++ADG   +N GRGY LR+I+RRA  +A LLG  EP +  + P +   MG AYPEL   
Sbjct: 301 MILADGTALSNTGRGYTLRKILRRASRHAYLLGMREPALYQIAPVVAAGMGDAYPELRTE 360

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +E  +R+E+ERF KTL+ G+  L  +LS + +   L+G+ AF LYDT+G PLD+ ++
Sbjct: 361 QGRVEAAIRAEEERFLKTLEGGIQRLGSLLSGMPQGGTLSGEEAFVLYDTYGFPLDLTKE 420

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G++ +D   + ++LE  ++ ARA S   G            E   AT+F+G+D L
Sbjct: 421 IAEEYGIS-VDEARYAESLENAQNIARAGSK-YGKSELFGGNQEALEGLSATEFVGFDHL 478

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                       V A+V  GE +    +G +  VV  +TPFY E
Sbjct: 479 E-----------------------AEGQVLALVGAGERLSHLSAGSEATVVLSRTPFYGE 515

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GG++GDTG    +G    + D +K   G+F+H  +VE+G L   +++   +  + R+ +
Sbjct: 516 GGGEVGDTGRLEWEGGAGMVRDTRKTPAGVFLHDVLVEQGELTEGVTVRGVVGPE-RQAI 574

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +H+ATHLLH AL  +LGS V Q GS +  D LRFD +H   +++ EL  +E  V+  I
Sbjct: 575 QRHHTATHLLHAALRAVLGSGVRQAGSLVAADRLRFDFSHGAALSAEELSRVETLVSRWI 634

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGG--VHSSALCGGTHV 699
           + N PV  + M   +A A+GA AL G KY ++VRVVSVE   E GG  V S  LCGG HV
Sbjct: 635 SANFPVTWQEMPIAEAKAAGATALFGEKYGEKVRVVSVEGDVEYGGQPVSSKELCGGAHV 694

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG+I    ++S+ ++ AG+RRIEA+ G+ A S +  +      +A+ L  S   +  R
Sbjct: 695 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATSWVRERLNGTARVAALLNTSPDGLEAR 754

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVED--------LSCHKIADVNFMSHIISEVDSKELKS 811
           V  +  + +  +   A  K QL                ++      +  +S ++  EL+ 
Sbjct: 755 VTGLQAQLKAAEKEVAAVKRQLAQAQMGSSSGGGAQTRELGGFRVAALKLSGIEGNELRG 814

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
             D L  +  + +++L       K  V+    + +    +A  L    A   GG GG GR
Sbjct: 815 AADKLLDQSGADLVVLAS----DKGLVVKASKDAVTRGAHAGQLVGKLAAAGGGKGG-GR 869

Query: 872 PHMAQSGGPNGNKADQAIAGV 892
           P MAQ+G  +   A  A+   
Sbjct: 870 PDMAQAGITDPVAALNALDTA 890


>gi|296437225|gb|ADH19395.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11222]
          Length = 874

 Score =  776 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/888 (37%), Positives = 493/888 (55%), Gaps = 47/888 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
               ++ D+ +HLI   E ++G  Y         RVI DH+RS SF IADG+LP N  RG
Sbjct: 238 TETVFEADVLRHLISKIENLSGTTYSTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERG 297

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E F
Sbjct: 298 YVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHF 357

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +      A ID+ +F
Sbjct: 358 FKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNYA-IDMDTF 416

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +   E + R+R ++       ++ ++  L +    ++FIGYD L    F          
Sbjct: 417 EKLEVEAKERSRKNTKKTK-NDSDSVFQDL-DPTNTSEFIGYDTLSCDTF---------- 464

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                        ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    + 
Sbjct: 465 -------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCES 511

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
               ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL 
Sbjct: 512 GTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALE 571

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   D
Sbjct: 572 MTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSD 631

Query: 659 AIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
            ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++ 
Sbjct: 632 VMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAVA 685

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A  
Sbjct: 686 TGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADL 745

Query: 778 KLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + QL  + +      C KI D +++ + ++E + + ++   +A+ K+I +  I L    K
Sbjct: 746 ENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 805

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
             +  VL  V++DL  R   V    L A++L   GG  GG+   AQ  
Sbjct: 806 NGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQGS 851


>gi|302823356|ref|XP_002993331.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii]
 gi|300138840|gb|EFJ05593.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii]
          Length = 920

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/941 (33%), Positives = 491/941 (52%), Gaps = 87/941 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-------- 54
           +  +IR TFL FF   GH+LLP SSL+P +DPT++ T +GM+ FK IF GQ         
Sbjct: 10  SGDAIRRTFLNFFAARGHQLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDNVLL 68

Query: 55  -----KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109
                   +    T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFK  AI+ 
Sbjct: 69  SRAQVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRW 124

Query: 110 AWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           AW+L T E+ L   R++++VY +D+EA  +W+   G+  ++I ++   DNFW+   TGPC
Sbjct: 125 AWELATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE++FD      G       +  R++E +NLVFMQ+ + +  +  +L + +IDTG+G
Sbjct: 185 GPCSEMYFDFHPE-RGTDDADLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLI 286
           LERMA +LQ+  NNY+ DL   +IQ + ++ G+ Y   +       +VI DH R+  +LI
Sbjct: 244 LERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLI 303

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYP 338
           +DG+ P+N GRGY++RR++RR +   RLLG             +  L   + +   +  P
Sbjct: 304 SDGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVISMSSNVDP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--------DEILNGDVAFKL 390
           ++ Q    I E L  E+ RF +TL+RG  LL   L               +L+G   F L
Sbjct: 364 DVKQNAGRIFEELEKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSTKPVLSGKDVFML 423

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS--LGLGSGTTEKIWFSL 448
           YDT+G P++I +++     +  +D+  F   +E QR +++     + L +G T     SL
Sbjct: 424 YDTYGFPVEITEEVAGENDV-QVDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSL 482

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
            E    T+F+GY  L                          + V+A++ +G +V E   G
Sbjct: 483 VE----TKFVGYTTLESI-----------------------AEVRALIARGGLVTEVREG 515

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGI 564
            +VE+V D TPFYAE+GGQ+GD G  +  G      +Q+ DVQK    + +H  IV++G 
Sbjct: 516 DEVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGT 575

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +    ++   ++   RR+    H+ATHLL  AL  +LGS  SQ GS +  D LRFD T S
Sbjct: 576 MAVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLS 635

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +   E+  +E  VN+ I+  +P+  ++M   +A  SGA A+ G KY ++VRVV V   
Sbjct: 636 RKMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVPG- 694

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S  LCGGTHVS+T EI    IV    I +G++RIEA+ G     H+  ++  L+ 
Sbjct: 695 ----ISKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGNAFIDHIFARENALRQ 750

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFM 797
           + S LK    ++  R+  + +E + L+      + ++ + +               V  +
Sbjct: 751 ICSSLKAKPEDLPARISGLQDELKALKSEATSLRAKVAIAEADVLTGRALLVGPGGVRIL 810

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-SKEKKASVLIVVTEDLLD-RFNAVDL 855
              +   D   L++ ++            L+G  +++ K S++   +  ++     A   
Sbjct: 811 VGALETTDVDSLRAAVEHCVALHGDPSATLLGACTEDGKVSLVAAFSPSVVKHGLKAGAF 870

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               AK+ GGGGG GRP  AQ+GG   +K   AI    + L
Sbjct: 871 VGSVAKLCGGGGG-GRPDFAQAGGKLPDKLPGAIEKAKADL 910


>gi|255349144|ref|ZP_05381151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503681|ref|ZP_05382071.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|255507361|ref|ZP_05383000.1| alanyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525793|emb|CBJ15274.1| alanyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435369|gb|ADH17547.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296439086|gb|ADH21239.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 875

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/889 (37%), Positives = 494/889 (55%), Gaps = 48/889 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  R
Sbjct: 238 TETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEH 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +      A ID+ +
Sbjct: 358 FFKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNYA-IDMDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R ++       ++ ++  L +    ++FIGYD L    F         
Sbjct: 417 FEKLEVEAKERSRKNTKKTK-NDSDSVFQDL-DPTNTSEFIGYDTLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ I++  EI      G +  ++   TPFYAE GGQ+GD+G    +
Sbjct: 466 --------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL
Sbjct: 512 SGTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   
Sbjct: 572 EMTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D ++S       G KY D VRVV          S  LCGGTH  +TG+I    I  E ++
Sbjct: 632 DVMSSSEIKQFFGDKYGDIVRVVLAG------FSHELCGGTHAQATGDIGYFRITKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L    A 
Sbjct: 686 ATGIRRIEATTGEDAENIARGQDMDLNEIATVIQSPKDQILIKIRSVMEEKKDLAKQVAD 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 746 LENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ  
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQGS 852


>gi|330443884|ref|YP_004376870.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328806994|gb|AEB41167.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 874

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/882 (36%), Positives = 483/882 (54%), Gaps = 46/882 (5%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R+ FL F+    H+++PSS + P  DP+++FTN+GM  FKNIF  +E   Y   TT QK
Sbjct: 6   LRSKFLNFYANRHHKIIPSSPVFPHQDPSILFTNAGMNQFKNIFLNKETVSYSRATTSQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK  A   AW+     F+     +Y
Sbjct: 66  CIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKADATTFAWEASLSVFNFAPEFIY 125

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
            TV+++D+EAF LW++   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+G      
Sbjct: 126 ATVHEKDDEAFALWERY--LPTERIFRLTDKDNFWSMADTGPCGYCSELLFDRGPKFGSA 183

Query: 187 -LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
             P    EGER++E WNLVFM+F +  + +   LP   +DTG GLER+ +++      ++
Sbjct: 184 SSPLEDIEGERFLEYWNLVFMEFNRTAEGDLLSLPNKHVDTGAGLERLISLISGTNTVFE 243

Query: 246 IDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
            D+ + LI   EQ++G  Y  +  +    RVI DH+RS SF IADG+LP N  RGYVLR+
Sbjct: 244 ADVLRMLIGKIEQLSGKTYCPDSPHGAAFRVIADHIRSLSFAIADGLLPGNTERGYVLRK 303

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ Y R LG+ +P +  ++P+L   MG AYPEL  +   I+E L +E+E F KTL 
Sbjct: 304 ILRRAVNYGRRLGFQQPFLAEIVPSLADAMGEAYPELRLSLTQIQEVLSNEEECFLKTLH 363

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG  LL  VL       +++G+ AFKL DT+GLP+D +  +        +D+ +F    +
Sbjct: 364 RGGNLLQQVLKASSSSSVISGEDAFKLKDTYGLPIDEIFLLAKDYNF-QVDMETFALLEQ 422

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           E + R+R HS+       + ++  L E   + +FIGYD L    F               
Sbjct: 423 EAKERSRKHSVKTQE-EVKVVYEQLPEL--SVEFIGYDTLSCDTF--------------- 464

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                   ++AI+ Q +IV     G++  ++   TPFYAE GGQ+GD+G          +
Sbjct: 465 --------IEAIISQDQIVSSLQEGEEGILILKTTPFYAEKGGQVGDSGEIFSQEGSFIV 516

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           +       G   HH  + +G L    ++   ++   R++++ NH+  HLLHHAL+++LG+
Sbjct: 517 SHTTTPQAGFIAHHGKMSQGKLSQAEAVTTQVNCIRRKKIANNHTGCHLLHHALASVLGN 576

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H+ Q GS +    +R D T+ K I   +L SIE  VND+I +N PV+TR     D + S 
Sbjct: 577 HIRQAGSYVDETKIRLDFTYPKAIAPEDLASIESLVNDLIRENHPVLTRETLYSDVMNSK 636

Query: 664 AAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                 G KY D VRVVS         S  LCGGTH  +TG++    IV E +I  GIRR
Sbjct: 637 EIKQFFGDKYGDTVRVVSAGV------SHELCGGTHAQATGDLGYFRIVKEHAIATGIRR 690

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEAITG+ A +    + + L   A  L+  +  ++ ++    E+ +K   + +  + +L 
Sbjct: 691 IEAITGEEAEAASRQERKLLDEAALLLQAPKDQLLAKLTHALEQRKKQDKVISDLENKLI 750

Query: 783 VEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
              L       H   +++++ + ++E +   L+   +   +K+    I L    K +K  
Sbjct: 751 SAQLDELINQRHSSHEISYLVYHLAEKEGHHLQQYANCFHQKLPQRSISLWITKKNRKYI 810

Query: 838 VLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           VL  ++EDL    F A +L +       GG  GG    AQ  
Sbjct: 811 VLSRISEDLAAQGFQAQELLKAILAP-YGGRWGGAKLSAQGS 851


>gi|118617374|ref|YP_905706.1| alanyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|205830158|sp|A0PPG6|SYA_MYCUA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118569484|gb|ABL04235.1| alanyl-tRNA synthetase AlaS [Mycobacterium ulcerans Agy99]
          Length = 901

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/922 (34%), Positives = 470/922 (50%), Gaps = 74/922 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKC+R      D+D VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT      
Sbjct: 60  TSIQKCIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L+ TVY +D+EA  LW++++GL AD+I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+EIWNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPDYGPEGGPVVNED--RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLI 286
           +ER+A +LQ   N Y+ DL + +I          Y+     + V +R+I DH R+++ LI
Sbjct: 234 VERVALILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+ P N+GRGYVLRR++RR +  A+LL     ++  L+  +   MG +YPEL      
Sbjct: 294 ADGVSPGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDSDR 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I     +E+  F +TL  G  L D V   +      +++G  AF L+DT+G P+++  ++
Sbjct: 354 INRIAVAEETAFNRTLASGSRLFDEVAGATRSSGVSVVSGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL  +D   F + + +QR RA+A +        +   +      G T+F G+D L 
Sbjct: 414 ASEAGLT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE-----EAVSGQKVEVVFDQTP 519
                                    + +  I   G+ V      +AV   +VE+V D+TP
Sbjct: 472 ----------------------TSEARILGIFVDGKRVPVVAHGQAVDADRVELVLDRTP 509

Query: 520 FYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            YAE+GGQ+ D G   G G     R  +TDVQK A+ +++H   VE G       +V   
Sbjct: 510 LYAESGGQIADVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAA 569

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R+  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   I
Sbjct: 570 DAGWRKGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQI 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+  N  +  +  V T     E A A GA AL G  Y D VRVV +    GG  S  LCG
Sbjct: 630 EEVTNQAVQADFAVHTFTEQLEKAKAMGAMALFGECYPDEVRVVEI----GGPFSIELCG 685

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV+++ +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    
Sbjct: 686 GTHVATSAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEE 745

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHII-SEVDSKEL 809
           V  RV  + E  +  +    + +L               +I +V  ++  + SE+   +L
Sbjct: 746 VPARVASLVERLKAAEKELERARLASVRAAAVNAAAGAERIGNVRLVAQRMSSEMTPADL 805

Query: 810 KSVMDALQKKIQS--GIIMLVGISKEKK---ASVLIVVTEDLLD-RFNAVDLARLSAKVL 863
           ++++  ++ K+ S   ++ L+      +      ++   +        A +L +  A  +
Sbjct: 806 RTLVGDIRGKLGSDPAVVALIAAPAGGESSTVPYVVAANQAAQGLGLGANELIKHLAAAV 865

Query: 864 GGGGGGGRPHMAQSGGPNGNKA 885
             G GGG+  +AQ  G      
Sbjct: 866 -DGRGGGKADLAQGSGKKPAGI 886


>gi|326519084|dbj|BAJ96541.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1008

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/966 (31%), Positives = 463/966 (47%), Gaps = 96/966 (9%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              + +R  F++FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P      
Sbjct: 60   TAARVREVFIDFFKSKSHTPWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTASPDSQLGR 119

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ 
Sbjct: 120  LSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEGAIGYAWELLTQV 179

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L   R+Y T +  DE        E+  +W K   L  ++++     DNFW M +TGPC
Sbjct: 180  YKLPTDRIYATYFGGDEKAGLAPDTESKNIWLKY--LPNERVLPFGCKDNFWEMGDTGPC 237

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPC+EI FD+           + +    IEIWNLVF+QF +++      LP   +DTGMG
Sbjct: 238  GPCTEIHFDRI-GNRDAASLVNNDDPTCIEIWNLVFIQFNRESDGSLRSLPAKHVDTGMG 296

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDH 278
             ER+ ++LQ K +NYD D+F  L  A  Q+ G+              G   + +RV+ DH
Sbjct: 297  FERLTSILQNKMSNYDTDVFMPLFDAIHQLAGVGIQPYSGKVGSDDVGKVDMAYRVVADH 356

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            +R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +
Sbjct: 357  IRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVF 416

Query: 338  PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHG 395
            PEL   +  I++ ++ E+  F  T+ +G          + ++   +L+G  AF L+DT+G
Sbjct: 417  PELKDNEKKIKDIIKDEEASFENTIAKGYERFKKAADAVKENGGAVLSGQDAFVLWDTYG 476

Query: 396  LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
             P+D+ + +    GL+ +D+  FN ++EE R +AR      G         S+     AT
Sbjct: 477  YPIDLTEVMAVDFGLS-VDMEGFNASMEEARQKARNARYKAGGK-------SIVLDANAT 528

Query: 456  QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
              +    L                 P       SS+VKAI    E +  A   +   +V 
Sbjct: 529  SELRNQGLAS-----------TNDSPKFQHEVHSSVVKAIYTGSEFIATASGDEDFGLVL 577

Query: 516  DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI----LRTEMSL 571
            + T FYAE GGQ+ DTG   G      + +VQ    G  +H      G     L     +
Sbjct: 578  ESTSFYAEQGGQIYDTGSIEGPSGSFTVNNVQ-VFAGYVLHIGSFLEGPDSKALSVGDEV 636

Query: 572  VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
               +DY  R  +S NH+ TH+L+ AL  +LG HV Q GS + P+ LRFD +H KP+   +
Sbjct: 637  KCKVDYTRRTLISPNHTCTHMLNFALKEVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPED 696

Query: 632  LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681
            L+ IE  VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+         
Sbjct: 697  LRKIEYIVNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLA 756

Query: 682  --EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLM 736
              E ++    S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T +   +A     
Sbjct: 757  NPESKEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLAS 816

Query: 737  GQDEKLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQLIHA 775
              D  +   +     +                       ++ G + ++ ++ RK +    
Sbjct: 817  SIDTDINEASKLDGATLEKKIGSIKNTLDAAAIPAARKADLRGNISKLEDQLRKAKKKMG 876

Query: 776  KRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            +  +Q  V+ +     A ++      ++H+   +D+  ++  +     + +S  IM+   
Sbjct: 877  EENIQKAVKTVIDAAEATLSEGKPFCVAHVDVGLDTTAVREAVVKAMNRFKSLPIMVFST 936

Query: 831  SK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
             +   KA +   V  D  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+
Sbjct: 937  DEASNKAVIYAGVPPDAPNGFKVLDWLTPSIAPLKGRGGGGKNGLAQGQGSDASRVKEAM 996

Query: 890  AGVASF 895
                  
Sbjct: 997  ELATQI 1002


>gi|166154091|ref|YP_001654209.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166154966|ref|YP_001653221.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335296|ref|ZP_07223540.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|205830022|sp|B0B8X5|SYA_CHLT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830023|sp|B0BAK4|SYA_CHLTB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|165930079|emb|CAP03562.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165930954|emb|CAP06516.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 875

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/889 (37%), Positives = 494/889 (55%), Gaps = 48/889 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  R
Sbjct: 238 TKTVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEH 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +      A ID+ +
Sbjct: 358 FFKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNYA-IDMDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R ++       ++ ++  L +    ++FIGYD L    F         
Sbjct: 417 FEKLEVEAKERSRKNTKKTK-NDSDSVFQDL-DPTNTSEFIGYDTLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ I++  EI      G +  ++   TPFYAE GGQ+GD+G    +
Sbjct: 466 --------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL
Sbjct: 512 SGTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   
Sbjct: 572 EMTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYS 631

Query: 658 DAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D ++S       G KY D VRVV          S  LCGGTH  +TG+I    I  E ++
Sbjct: 632 DVMSSSEIKQFCGDKYGDIVRVVLAG------FSHELCGGTHAQATGDIGYFRITKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA TG+ A +   GQD  L  +A+ ++  +  ++ ++  + EE + L    A 
Sbjct: 686 ATGIRRIEATTGEDAENIARGQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVAD 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 746 LENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ  
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQGS 852


>gi|148272984|ref|YP_001222545.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|205830025|sp|A5CRZ5|SYA_CLAM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|147830914|emb|CAN01858.1| alaS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 885

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/928 (32%), Positives = 473/928 (50%), Gaps = 78/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F   GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   
Sbjct: 1   MQTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VGRT RH TFF+M GNFSFG YFKE+AI  AW+LLT      
Sbjct: 60  TSVQKCIRT----LDIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L++TVY ED+EA + WK+I+GL  ++I  +  + N+W   + GP GPCSEIF
Sbjct: 116 GLGFSPDDLWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK------QERFILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQ+ +         +    LPK +IDTGMGL
Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPKKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID  + ++  + +++G +Y  +  + V  R++ DH+RSS  L++D
Sbjct: 235 ERVAFLKQGVENMYEIDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSLMLMSD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGY+LRR+MRR +   RL+G        L PA    M +AYPE+      I 
Sbjct: 295 GVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E+E F +TL  G  +LD  +  +     E + GD AF L+DT G P+D+  ++  
Sbjct: 355 RLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMAE 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
             GL  +D  +F++ + EQR+RA+A +    +   +   +S     G T+F GYD L   
Sbjct: 415 ENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELETG 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  + +  ++  G  V+ AV+G   EV+  +T  YAE+GG
Sbjct: 474 -----------------------TTILGLIVGGRSVDHAVAGDIAEVILPETSLYAESGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  +G G  L++ DVQK  +G+  H   V  G +    +    +D   RR  +  
Sbjct: 511 QEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTVVDADWRRGATQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THL+H AL  +LG    Q+GS      +R D   ++ ++S     IED  N  +  +
Sbjct: 571 HSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSSETRSEIEDIANGAVRDD 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L VVTR+M  ++A   GA AL G KY D VRVV +    GG  S  LC GTHVSS+ +I 
Sbjct: 631 LRVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQIG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ +V ESS+ +  RRIE++ G+ A   L  +   +  L S LK  +  +  R+ ++ + 
Sbjct: 687 LINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSTLKTPREQLPDRIADLMQN 746

Query: 767 YRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820
            +  +   A  + Q   + +        ++  V  +   +  V  + E++ ++  ++++ 
Sbjct: 747 LKTAERRIADFEAQALQQRVPALLAQGSRVGAVTLIQESLGAVRSADEVRQLVTLVRERA 806

Query: 821 QS-GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL----------ARLSAKVLGGGGG 868
            S  +++ +      K +V++   +   D    A  L                 L     
Sbjct: 807 GSEPVVVALAGDAGGKPTVIVATNQAARDAGAKAGQLARAAAAVLGGGGGGKDDLA---- 862

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
                  Q GG + +    A+  V   L
Sbjct: 863 -------QGGGSDVSAIGDALTAVRQAL 883


>gi|319952367|ref|YP_004163634.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319421027|gb|ADV48136.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 871

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/921 (36%), Positives = 488/921 (52%), Gaps = 76/921 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR+ FLEFF+   H+++ S+ ++  +DPTLMFTN+GM  FK  F G   P    
Sbjct: 1   MKS-QEIRSKFLEFFKDKEHKIVASAPMVIKDDPTLMFTNAGMNQFKEFFLGNTVPKDTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFKE AI  AW+ LT    +
Sbjct: 60  VTDTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAITWAWEFLTDVCKI 119

Query: 121 DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D+  LY+TV++  +         EA  LWK I  +   +I+     DNFW M + GPCGP
Sbjct: 120 DKTSLYVTVFEGSKDADNLDQDSEALALWKNI--VPESQILFGNKKDNFWEMGDQGPCGP 177

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D    + +    G    + +  + +EIWNLVFMQ+ ++   +   LP   +DTG
Sbjct: 178 CSEIHVDIRSAEEKAKVSGASLVNNDHPQVVEIWNLVFMQYNRRANGQLESLPAKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFL 285
           MG ER+  V+Q   +NYD D+F  +I+  E +T   Y  +    +  RVI DH+R+ SF 
Sbjct: 238 MGFERLCMVMQGVQSNYDTDVFTPIIREIEAITKSTYGKDEKIDIAIRVIADHIRAVSFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I+DG LP+N G GYV+RRI+RRA+ Y    L   EP M  L+  LC  MG+A+PEL   K
Sbjct: 298 ISDGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFMYRLVNVLCDSMGAAFPELKNQK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LIE  ++ E+  F KTLD+GLVLLD ++S+    +I++G  AF+LYDT G P+D+   I
Sbjct: 358 QLIENVIKEEEHSFLKTLDQGLVLLDSIISNA-DTKIIDGRKAFELYDTFGFPIDLTALI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  RGL  +D   F+ A++EQ+ R+R+ S       T      +       +FIGY+ L 
Sbjct: 417 LSERGL-NLDEKGFDVAMQEQKKRSRSASEISKEDWT------VLSSDLEQEFIGYEFLE 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            +  + + RKV  +K                            G++ + VF+ TPFYAE 
Sbjct: 470 SNVKLVKYRKVTSKK---------------------------DGEQYQFVFNLTPFYAEG 502

Query: 525 GGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G     +G  + I D +K+           +        +    +D + RR+ 
Sbjct: 503 GGQVGDKGYLEAANGDVIYILDTKKENNETIH---FAKNLPKEVRETFKAVVDQKQRRRT 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  ILG+HV Q GS +    LRFD +H   +T+ EL  +E  VN  I
Sbjct: 560 EANHTATHLLHQALREILGAHVEQKGSAVHSKYLRFDFSHFSKMTADELAEVERFVNARI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             NLP+   R +  + AI  GA AL G KY D VR +          S  LCGGTHV +T
Sbjct: 620 EGNLPLEEGRNIPMQTAIEQGAMALFGEKYGDAVRTIRFGK------SIELCGGTHVKNT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I    I SE ++ +GIRRIEAIT    +      +  L  +   L  +  + V  +  
Sbjct: 674 GDIWHFKIKSEGAVASGIRRIEAITSDAVKDFYSENNNVLSEVKHLLN-NSKDPVKALSS 732

Query: 763 IWEEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE  KL+       + K +    DL      I  ++F++  + ++D+  +K +   + 
Sbjct: 733 LQEENAKLKKEVEGLLRDKAKNLKGDLLNEIQSINGIDFLAKKV-DLDAGGIKDLSFEM- 790

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
            + +  + +L+    E KA +   ++++L+     +AV + R   K++ GGGG G+P  A
Sbjct: 791 GQNKDNLFLLLAAENEGKALLSCYISKELVANKELSAVTVVRELGKLIQGGGG-GQPFFA 849

Query: 876 QSGGPNGNKADQAIAGVASFL 896
            +GG N     +A+    ++L
Sbjct: 850 TAGGKNPEGIAEALEQAKNYL 870


>gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 963

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/976 (31%), Positives = 465/976 (47%), Gaps = 115/976 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
              +R T+++FF+  GH+  PSS ++P NDPTL+F N+GM  +K IF G   P       
Sbjct: 13  AKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 73  SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 132

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W K+  L + +++     DNFW M +TGPCG
Sbjct: 133 GLPTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCG 190

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 191 PCTEIHYDRI-GNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGF 249

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +    ++ TG +               + +RV+ DH+R+
Sbjct: 250 ERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRT 309

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y +  L   E     L+ ++   MG  + EL
Sbjct: 310 LSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTEL 369

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I + ++ E+  F KTL +G+           +   L+GD AF L+DT+G PLD+
Sbjct: 370 KEHEKKITDIIKEEEASFCKTLAKGIEKFRKA-GQAVQGNTLSGDDAFILWDTYGFPLDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  +D+  FN+A+EE R R+R+       G                     
Sbjct: 429 TQLMAEERGL-LVDVDGFNKAMEEARERSRSAQNKQAGGAIV-----------------M 470

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K                   S +KAI      +E + +   V +V   T F
Sbjct: 471 DADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSF 530

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G      + +VQ    G  +H   +  E G +     ++  +DY+
Sbjct: 531 YAEQGGQIFDTGLIEGSFGTFNVCNVQI-FGGFVLHIGYLSKETGEVSVGDKVICKVDYE 589

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L++AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ IE  
Sbjct: 590 RRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESI 649

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V ++     +A    G  A+ G  Y D VRVVS+           E  + 
Sbjct: 650 VNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEW 709

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK 743
            + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      + +++
Sbjct: 710 SLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVE 769

Query: 744 SLA-----------SFLKVSQG----------NVVGRVEEIW--------EEYRKLQLIH 774
             +           S LK              ++  ++  +          E RK Q   
Sbjct: 770 DASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQVISSFSLTNEVRKAQKKI 829

Query: 775 AKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           A++ L+ +V+       S         +  +   +D+  ++  +  + +K    I++   
Sbjct: 830 AEQNLKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFST 889

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGG 879
                KA V   V E   D+F  +D+       LG       P           +A   G
Sbjct: 890 DESTNKAVVCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQG 941

Query: 880 PNGNKADQAIAGVASF 895
            + ++   A+   +SF
Sbjct: 942 TDASQVQAALDMASSF 957


>gi|255311581|ref|ZP_05354151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317882|ref|ZP_05359128.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276s]
          Length = 875

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/889 (37%), Positives = 493/889 (55%), Gaps = 48/889 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  R
Sbjct: 238 TETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEH 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +      A ID+ +
Sbjct: 358 FFKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNYA-IDMDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R ++       ++ ++  L +    ++FIGYD L    F         
Sbjct: 417 FEKLEVEAKERSRKNTKKTK-NDSDSVFQDL-DPTNTSEFIGYDTLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +
Sbjct: 466 --------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL
Sbjct: 512 SGTFLVSHTIAPKTGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   
Sbjct: 572 EMTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++
Sbjct: 632 DVMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A 
Sbjct: 686 ATGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVAD 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 746 LENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ  
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQGS 852


>gi|15605482|ref|NP_220268.1| alanyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789490|ref|YP_328576.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237805100|ref|YP_002889254.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|6707747|sp|O84754|SYA_CHLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123606616|sp|Q3KKU4|SYA_CHLTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|6578113|gb|AAC68344.2| Alanyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76168020|gb|AAX51028.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273400|emb|CAX10315.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436296|gb|ADH18470.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296438155|gb|ADH20316.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140656|gb|ADH97414.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 875

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/889 (37%), Positives = 493/889 (55%), Gaps = 48/889 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  D+I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  R
Sbjct: 238 TETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEH 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +      A ID+ +
Sbjct: 358 FFKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNYA-IDMDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R ++       ++ ++  L +    ++FIGYD L    F         
Sbjct: 417 FEKLEVEAKERSRKNTKKTK-NDSDSVFQDL-DPTNTSEFIGYDTLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +
Sbjct: 466 --------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL
Sbjct: 512 SGTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   
Sbjct: 572 EMTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++
Sbjct: 632 DVMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A 
Sbjct: 686 ATGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVAD 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 746 LENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ  
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQGS 852


>gi|323341643|ref|ZP_08081876.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464068|gb|EFY09261.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 869

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/904 (35%), Positives = 500/904 (55%), Gaps = 66/904 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S IRT FL++F+   H + P + L+P +D TL++ NSG+   K  F G+ KP    + 
Sbjct: 5   TSSEIRTMFLDYFKAQDHMIEPGAPLVPIDDDTLLWINSGVAALKKYFDGRVKPKKPRIA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TKEFDL 120
            VQK +R     ND+DNVG+T RHHTFFEMLGNFS G YFKE AI  A++ L  ++  DL
Sbjct: 65  NVQKSLRT----NDIDNVGKTARHHTFFEMLGNFSIGDYFKEEAIGFAYEFLFSSEWLDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  + Y +V+ +D+EAF +W     +S  +I+R  T+DNFW + + GPCGP SEIF+D+G
Sbjct: 121 DVNKAYFSVHTDDQEAFDIWVNKYNVSPSRILR--TDDNFWQIGD-GPCGPNSEIFYDRG 177

Query: 181 E-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ---ERFILPKMSIDTGMGLER 232
           E      I   L     E +RY+E+WN+VF QF+            LP+ +IDTGMG ER
Sbjct: 178 EKYDPEHIGERLFFEDLENDRYVEVWNIVFSQFDGVEGGDIHTFKELPQKNIDTGMGFER 237

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           + +++Q+   N+D DLF  +IQA E +T MKY+ +N++ +RVI DH+RS  F +ADG + 
Sbjct: 238 LVSIVQDGDTNFDTDLFIPIIQAIEALTPMKYQ-DNVMAYRVISDHIRSLVFTLADGAVF 296

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA+ + ++L      +  L+  +   MG +YP L + + +I + + 
Sbjct: 297 SNEGRGYVLRRILRRAVRFGKVLEIEGTFLHGLVDDVIAVMGDSYPNLAEHRDMIVKLIL 356

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           SE+ERF KTL  G  LL   +    ++ ++ GDVAFKLYDT+G P+++ Q+I     +  
Sbjct: 357 SEEERFAKTLAGGEKLLLDTI-EANQEAVITGDVAFKLYDTYGFPIELTQEIAEEHHVT- 414

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D+  F  +LEEQ+ RAR+    + S  +++    L      ++FI YD+          
Sbjct: 415 VDLDGFKASLEEQKERARSSRQKVESMGSQQ--EDLLNFKENSEFI-YDVFET------- 464

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              V  +   G+ V+      K  VVFD+T FYAE+GGQ+ DTG
Sbjct: 465 ----------------QGRVVGLFVDGKRVDSFTG--KGHVVFDKTCFYAESGGQVADTG 506

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               D  + ++ DV+K   G  +H   V+ G +       L ID + R  +  NHS  HL
Sbjct: 507 TIESDSAKGKVLDVKKANGGQPLHFVDVD-GTITMGQVFDLKIDAKRRILIRKNHSCVHL 565

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL +++G HVSQ GS +  +  RFD +H + +T  +L+ +E  +N  IA++LP+   
Sbjct: 566 LHSALKSVVGDHVSQAGSYVDDNYFRFDFSHFEKVTDEQLEKVELMINQWIAESLPITVV 625

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               E+A A GA AL    Y   VRVV++     G  S  LCGGTH   TGEI +  +VS
Sbjct: 626 EKPLEEAKAMGAMALFSENYGSVVRVVTM-----GDASMELCGGTHAHGTGEIGVFKLVS 680

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ 771
           E S+ +G+RRI   T   A +     + ++ ++ + LK   Q ++  ++EE+  E + L+
Sbjct: 681 EESVGSGVRRILGKTSFGAYTSYKETEFEVDAIRTQLKLSPQKSIKTKIEEMEAEMKLLE 740

Query: 772 ----LIHAKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+ A        E +   ++   D++F+   + + +   +K +++ ++  +    I
Sbjct: 741 GKYKLMMADVLKAKTQEYIQMAEVVGNDLSFVWIDMDDQEMNVVKELVERIRDHVD---I 797

Query: 826 MLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           + V   K    + ++  ++  +     A DLA+ +A V  GG GGG+P+ AQ+GG +  K
Sbjct: 798 VFVANHKASSVNFVVGCSDKAIKAGVKAGDLAKEAA-VTTGGNGGGKPNFAQAGGKDITK 856

Query: 885 ADQA 888
            + A
Sbjct: 857 IEDA 860


>gi|240278873|gb|EER42379.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H143]
          Length = 961

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/967 (32%), Positives = 476/967 (49%), Gaps = 99/967 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +         EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRIGARNASH-LVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL  ID   F +A    R +++  S G G  T + +  ++ +          
Sbjct: 435 TRLMAEERGLT-IDNAEFEEA----RLKSKEASKGQGKRTADVVKLTVHD---------- 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 480 ----LGLLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++   D
Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQ-VYGGYILHTGFMKYGSFNVNDSVIAEYD 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 595 ELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIE 654

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V  + +    A   SG  A+ G  Y D VRVVSV  E           
Sbjct: 655 RISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDP 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + 
Sbjct: 715 RWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGER 774

Query: 745 LASFLKV---SQGNVVGRV--------------------------EEIWEEYRKLQLIHA 775
           L  F K+    Q  +  ++                          +++ E  +  Q + +
Sbjct: 775 LRRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLES 834

Query: 776 KRKLQLNVE--DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           K+ L       +   +K+A  + +  +    + K L   ++ ++ K+Q   + +    KE
Sbjct: 835 KKALDAITGYFEAPENKVAS-HLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKE 893

Query: 834 -KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K      V + L +      D A   + ++ GG  GG+  ++   G    K D+AI  
Sbjct: 894 AGKVVHGCHVAQSLSEQGATPNDWANAVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKA 952

Query: 892 VASFLKK 898
              +L+K
Sbjct: 953 ATEYLEK 959


>gi|254571161|ref|XP_002492690.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115]
 gi|238032488|emb|CAY70511.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115]
          Length = 981

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/968 (32%), Positives = 484/968 (50%), Gaps = 94/968 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+TF +FF+   H  +PSSS+IP +DPTL+FTN+GM  +K IF G   P      
Sbjct: 32  TANKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFAT 91

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI   W+LLTK 
Sbjct: 92  LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKV 151

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY++ +        + D EA + WK + G++ D I+  +  DNFW M + GPC
Sbjct: 152 YGLEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPC 210

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN+VF+QF ++       LP   IDTGMG
Sbjct: 211 GPCSEIHYDRIGG-RNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGMG 269

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ   +NYD D+F  L    +++TG++    +            +RV+ DH+R
Sbjct: 270 FERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHVR 329

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L PAL  ++   +P
Sbjct: 330 TLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETFP 389

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+ +    I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G 
Sbjct: 390 EVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 449

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F  A E  R  ++ +    G                  +
Sbjct: 450 PVDLTRLMAEETGLK-IDDEGFEIAKEASREASKGNGKTQGK-----------------E 491

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
            +  D+    +  K              T  + + + AI    E+++   E    Q++ +
Sbjct: 492 LVKLDVHVLGELEKNSEVPKTDDSYKYGTKNIEASIVAIYNGKELIQSTSEVADDQQLGI 551

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+TPFYAE GGQ+ DTG  + DG+    + +VQ    G  +H   VE G+L     ++
Sbjct: 552 LLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQ-SYAGYVLHTGYVEEGVLSVSDKII 610

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H K +T +EL
Sbjct: 611 AGYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSEL 670

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           + +ED  N++I +N+PV    +        +G  A+ G  Y D VRVVS+          
Sbjct: 671 QKVEDISNEVIKKNVPVFASDVTLAVGKEINGLRAVFGETYPDPVRVVSIGVPVEELVKN 730

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--------- 731
               +    S   CGGTHV+ TG+I    I+ ES I  GIRRI A+T   A         
Sbjct: 731 PSNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQRIARE 790

Query: 732 ----------RSHLMGQDEKLKSLASFLKVSQGNVVGR---------VEE-IWEEYRKLQ 771
                      S    +++KLK     L   Q +V+ +         +E+ + +E +  Q
Sbjct: 791 KNDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVKDELKVRQ 850

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGI 830
              +K+ L   V+D          F++H+    ++K L      ++K+I    + L VG 
Sbjct: 851 KAESKKTLD-TVKDYFNEHEDSPFFVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLIVGN 909

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E K +    V+++ L +          A    GG  GG+ ++ Q  G N    ++AI 
Sbjct: 910 ESEPKIAQGCYVSDNALSKGVVASEVTNVASEFIGGKAGGKGNICQGVGTNPEGINKAIE 969

Query: 891 GVASFLKK 898
            V   LK+
Sbjct: 970 AVTKILKE 977


>gi|302801948|ref|XP_002982730.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii]
 gi|300149829|gb|EFJ16483.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii]
          Length = 934

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/941 (33%), Positives = 489/941 (51%), Gaps = 86/941 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-------- 54
           +  +IR TFL FF   GH LLP SSL+P +DPT++ T +GM+ FK IF GQ         
Sbjct: 23  SGDAIRRTFLNFFAARGHHLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDSVLL 81

Query: 55  -----KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109
                   +    T QKC+R     ND++NVGRT+RHHTFFEMLGNFSFG YFK  AI+ 
Sbjct: 82  SRAQVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRW 137

Query: 110 AWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           AW+L T E+ L   R++++VY +D+EA  +W+   G+  ++I ++   DNFW+   TGPC
Sbjct: 138 AWELATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPC 197

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE++FD              +  R++E +NLVFMQ+ + +  +  +L + +IDTG+G
Sbjct: 198 GPCSEMYFDFHPERGTDDAVDLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLG 257

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLI 286
           LERMA +LQ+  NNY+ DL   +IQ + ++ G+ Y   +       +VI DH R+  +LI
Sbjct: 258 LERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLI 317

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGY--------TEPLMMHLLPALCTEMGSAYP 338
           +DG+ P+N GRGY++RR++RR +   RLLG             +  L   + +   +  P
Sbjct: 318 SDGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVVSMSSNVDP 377

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--------GKDEILNGDVAFKL 390
           ++ Q    I E L  E+ RF +TL+RG  LL   L               +L+G   F L
Sbjct: 378 DVKQNAGRIFEELDKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSAKPVLSGKDVFML 437

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS--LGLGSGTTEKIWFSL 448
           YDT+G P++I +++     +  +D+  F   +E QR +++     + L +G T     SL
Sbjct: 438 YDTYGFPVEITEEVAGENDV-QVDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSL 496

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
            E    T+F+GY  L                          + V+A++ +G +V E   G
Sbjct: 497 VE----TKFVGYTTLESI-----------------------AEVRALIARGGLVTEVREG 529

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGI 564
            +VE+V D TPFYAE+GGQ+GD G  +  G      +Q+ DVQK    + +H  IV++G 
Sbjct: 530 DEVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGT 589

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +    ++   ++   RR+    H+ATHLL  AL  +LGS  SQ GS +  D LRFD T S
Sbjct: 590 MAVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLS 649

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +   E+  +E  VN+ I+  +P+  ++M   +A  SGA A+ G KY ++VRVV V   
Sbjct: 650 RKMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVPG- 708

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S  LCGGTHVS+T EI    IV    I +G++RIEA+ G     H+  ++  L+ 
Sbjct: 709 ----ISKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGDAFIDHIFARENALRQ 764

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFM 797
           + S LK    ++  R+  + +E + L+      + ++ + +               V  +
Sbjct: 765 ICSSLKAKPEDLPARISGLQDELKALKSDATSLRAKVAIAEADVLTGRALLVGPGGVRIL 824

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-SKEKKASVLIVVTEDLLD-RFNAVDL 855
              +   D   L++ ++            L+G  +++ K S++   +  ++     A   
Sbjct: 825 VGALETTDVDSLRAAVEHCVALHGDPSATLLGACTEDGKVSLVAAFSPSVVKHGLKAGAF 884

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               AK+ GGGGG GRP  AQ+GG   +K   AI    + L
Sbjct: 885 VGSVAKLCGGGGG-GRPDFAQAGGKLPDKLPGAIEKAKADL 924


>gi|88802166|ref|ZP_01117694.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88782824|gb|EAR14001.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 872

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/927 (35%), Positives = 479/927 (51%), Gaps = 87/927 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR TFL FF++  H ++PS+ ++  +DPTLMF NSGM PFK  F G   P    
Sbjct: 1   MKS-QDIRATFLNFFKEKSHLIVPSAPMVTKDDPTLMFINSGMAPFKEYFLGNAIPKNNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           ++  QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +
Sbjct: 60  ISDSQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKI 119

Query: 121 DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           D+  LY+TV++  E         EA+ LWKK   +  D+I++    DNFW M   GPCGP
Sbjct: 120 DKDILYVTVFEGTEDADALEMDTEAYDLWKK--HIPEDRILKGNKKDNFWEMGAQGPCGP 177

Query: 172 CSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSEI  D    + +         + +    +EIWNLVFMQF ++       LP   IDTG
Sbjct: 178 CSEIHVDIRSAEEKEKVDAKTLINGDHPHVVEIWNLVFMQFNRKADGSLEDLPNKHIDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285
           MG ER+  VLQ   +NYD D+FK +I     +T  KY  N    +  RVI DHLR+ +F 
Sbjct: 238 MGFERLCMVLQNVQSNYDTDIFKPIISEIGTITNTKYGSNQQQDIATRVISDHLRAVAFS 297

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+A+PELI  K
Sbjct: 298 IADGQLPSNTGAGYVIRRILRRAIRYGFTFLDKKEPFIYKLVDVLSKKMGTAFPELIDQK 357

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            LIE  +R E+  F KTLD+GL+LLD ++S     E ++G+  F+LYDT G P+D+   I
Sbjct: 358 QLIENVIREEEASFLKTLDKGLLLLDVLISSTDSKE-ISGEKVFELYDTFGFPVDLTALI 416

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  +G   +D   F + L++Q+ R+RA S       T  +  ++ E      F+GYD L+
Sbjct: 417 LAEKGYT-LDEKGFQEELQKQKKRSRAASESATEDWTVLVEDAVAE------FVGYDTLK 469

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
            S  +   RK                           V     G+  ++VF+ TPFY E 
Sbjct: 470 TSVKITRYRK---------------------------VTSVKDGEMYQLVFNLTPFYPEG 502

Query: 525 GGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD G      G  + I D +K+   I      + + IL      +  ++ + R + 
Sbjct: 503 GGQVGDKGSLEDIHGNVVYILDTKKENNVIIHFTKNLPKHILEG---FIAVVEEKQRYRT 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLLH AL  +LG+HV+Q GS +    LRFD +H   +T+ EL  +E+ VN  I
Sbjct: 560 ACNHTATHLLHQALRKVLGTHVTQKGSAVHSKYLRFDFSHFSKLTTDELFEVENFVNARI 619

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  LP+  +  +  +DAI  GA AL G KY D VR +          S  LCGGTHV +T
Sbjct: 620 SGKLPLEEQRNVPMQDAIDQGAMALFGEKYGDTVRAIKFGA------SVELCGGTHVKNT 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++    I SE  + +GIRRIEAIT    +      ++ L  +   L  +       V +
Sbjct: 674 SDLWHFKIKSEVGVASGIRRIEAITNDAVKDFYAKNNKILSEIKETLN-NTKEPTKAVLK 732

Query: 763 IWEEYRKLQLIHAKR---KLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQ 817
           + EE   LQ    +    K Q    +L    I    V+F++  + ++D+  +K++   L 
Sbjct: 733 LQEENNFLQKQIEQLLREKAQHLSGELKSQLIDMNGVSFLAAKV-DLDANGIKNLAFDLG 791

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVL------GGGGGG 869
           K   +  ++      + KA +   ++++L +   ++A  + R   K++            
Sbjct: 792 KDATNLFLLFANAPSKDKAMLTCYISKELANERGYDAGKVVRELGKLIHGGGGGQN---- 847

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896
                A +GG N     +A+     ++
Sbjct: 848 ---FFATAGGKNPGGISKALEKAKEYV 871


>gi|325282994|ref|YP_004255535.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314803|gb|ADY25918.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 892

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/933 (35%), Positives = 488/933 (52%), Gaps = 97/933 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE----KPVY 58
             + IR  FLEFF    H +LP   ++   DPT MFT +GM  FK  F G      +   
Sbjct: 16  TTADIRRKFLEFFHSKEHLILPGHPVVAP-DPTTMFTVAGMQQFKPQFMGAPAVFSEGAS 74

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
           + VTT QKCVR     +D++NVGRT RH + FEM+GNFSFG YFK  AI  AW+ LT  +
Sbjct: 75  KRVTTAQKCVRM----DDIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIAWAWEFLTSPE 130

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171
               D  R+Y+T+Y +D+EAF+ W +  GL  D I R   ++NFW          GPCGP
Sbjct: 131 WMGFDPERMYVTIYVDDDEAFRYWTEDHGLPKDHIHRFGADENFWPADAPLKGPNGPCGP 190

Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMS 223
           CSEI++D+G             + E  R++E+WNLVF +F++Q   E        LP  +
Sbjct: 191 CSEIYYDRGPKYGDDSWADYAKTRESARFLEVWNLVFPEFDRQGLDESGQPILAPLPFKN 250

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283
           IDTGMGLER+A+V+Q+  + Y  D+F  LI    +++G  YEG + V+HRVI +H RS S
Sbjct: 251 IDTGMGLERVASVVQDVPDFYTNDVFAPLIDKIVELSGRPYEGESSVSHRVIAEHARSVS 310

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            +IADG+  +N GRGYV+R+++RRA  +A LLG  EP +  L+P +  +M   YPEL+  
Sbjct: 311 MVIADGVALSNTGRGYVVRKVLRRASRHAYLLGLNEPSIYRLVPLVVEKMKDGYPELVAE 370

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  ++  +R+E+ERF +TL+ G+  L+G+L  LG +++L+G+ AF LYDT+G PLD+ Q+
Sbjct: 371 QERVQAAIRAEEERFLRTLEGGIQRLNGLLEELGSEKVLSGEDAFTLYDTYGFPLDLTQE 430

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I    G+  +D+  +  ALE  +  ARA S   G            +    T+F+GYD L
Sbjct: 431 IAAEHGV-DVDVTGYELALERAQETARAGSK-FGKSELFDAGAEAVQNLPQTEFVGYDQL 488

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                       V A++      +  V G K  VV  +TPFYAE
Sbjct: 489 D-----------------------AEGEVLAVL------DSEVEGHK-TVVLSRTPFYAE 518

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GG++GDTG     G   ++ D +K   G+F+H   V RG L     +   +  + R  +
Sbjct: 519 GGGEVGDTGRLEWAGGEGRVLDTRK-IGGVFLHEVEVLRGELSQGAGVRGVVGAE-RAAI 576

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +H+ATHLLH AL  +LGS V Q GS + PD LRFD TH+  +++ EL ++E  V+  +
Sbjct: 577 QRHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHTAALSAEELAAVETLVSRWV 636

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHV 699
           + N PV+ + M  E+A A+GA AL G KY D VRVV VE    Y    V S  LCGG HV
Sbjct: 637 SANFPVIWQEMPIEEAKAAGATALFGEKYGDTVRVVRVEGDVDYGGAAVSSMELCGGAHV 696

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG+I    ++S+ ++ AG+RRIEA+ G+ A + +  +  +L   AS L  S   +  R
Sbjct: 697 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATAWVRERLGRLNRTASLLNTSAEGLEDR 756

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVM 813
           +  +  + +  +   A+ + QL    +         ++      S  +S V+  EL+   
Sbjct: 757 IAGLQHQLKASEKEMAQVRAQLAEAQMGGGNSADTRELGGFKVASLKLSGVEGNELRGAA 816

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR-- 871
           D L ++  + ++++       K  V+    + +    +A  L              G+  
Sbjct: 817 DRLLEQSGADLVVIAS----DKGLVVKATKDAVAKGAHAGQLV-------------GKLA 859

Query: 872 ----------PHMAQSGGPNGNKADQAIAGVAS 894
                     P MAQ+G  +   A  A+    S
Sbjct: 860 AAGGGRGGGRPDMAQAGITDAAGALGALDTALS 892


>gi|257413376|ref|ZP_04742849.2| alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203713|gb|EEV01998.1| alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 778

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/794 (39%), Positives = 453/794 (57%), Gaps = 46/794 (5%)

Query: 5   SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
           + +R  +LEFF+  GH  + S SL+P ND +L+  N+GM P K  FTGQE P  + VTT 
Sbjct: 13  NELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 72

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   L++ R
Sbjct: 73  QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIHWSWEFLTQVLGLEEDR 128

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFD 178
           LY ++Y ED+EAF++W K  G+ A+KI R          DNFW     GPCGPCSEI++D
Sbjct: 129 LYPSIYGEDDEAFEIWNKEVGVPAEKITRFYRDPETGECDNFWEHGA-GPCGPCSEIYYD 187

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P      + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V
Sbjct: 188 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELAQKNIDTGMGLERLAVV 247

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+  + +DID  K +     +++G KY+ +  + V+ R+I DH+RS++F+I+DGI+P+N
Sbjct: 248 MQDVDSVFDIDTMKAIRDKVCEMSGKKYQVDALDDVSIRLITDHIRSATFMISDGIMPSN 307

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRRI+RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E
Sbjct: 308 EGRGYVLRRIIRRAARHGRMLGIDGIFMAKLAATVINESKDGYPELEEKKDFIFKVLSQE 367

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+FGKT+D+GL +L  +   +  D  ++L+G+ AFKLYDT+G P+D+ Q+IL  +G + 
Sbjct: 368 EEKFGKTIDQGLSILSDMEKQMEADGVKVLSGENAFKLYDTYGFPMDLTQEILEEKGFS- 426

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F +A+E QR+ AR           ++  +   +    T+F+GYD L         
Sbjct: 427 VDEEGFKKAMEVQRTTARKARKVTNYMGADETVYESVDPSVTTEFVGYDSLN-------- 478

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  +  + EIVE    G+   V+ +QTPFYA  GGQ GD G
Sbjct: 479 ---------------CKSKITVLTTETEIVEALSDGEVGTVIVEQTPFYATMGGQQGDKG 523

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                    Q+ D  K   G   H   +  G+++T     L++D   R ++  NHSATHL
Sbjct: 524 IIRTAAGEFQVEDTIKLLGGKVGHVGKMISGMMKTGDEADLSVDAALRAKICKNHSATHL 583

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    +  RFD +H   +T  EL+ +E  VND IA+ +PV T 
Sbjct: 584 LQKALREVLGTHVEQAGSYQDGERTRFDFSHFAAMTPEELEKVEKIVNDKIAEAIPVRTD 643

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M  ++A  +GA AL G KY + VRVVS+     G  S   CGGTHV +T EI    I+S
Sbjct: 644 VMTVDEAKKTGAMALFGEKYGETVRVVSM-----GDFSKEFCGGTHVKNTSEIAAFKIIS 698

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + AG+RRIEA+TG    ++    +++L   A   K +   +  ++E +  E + L  
Sbjct: 699 ENGVAAGVRRIEALTGDNVFAYYRNLEKELLEAAKAAKATPATLTEKIEHMQAEIKALTS 758

Query: 773 IHAKRKLQLNVEDL 786
            +   K +   E L
Sbjct: 759 ENESLKSKAAKEAL 772


>gi|237803179|ref|YP_002888373.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274413|emb|CAX11208.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
          Length = 875

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/889 (37%), Positives = 493/889 (55%), Gaps = 48/889 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  ++I R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++G  Y          RVI DH+RS SF IADG+LP N  R
Sbjct: 238 TETVFEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  +   I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEH 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +      A ID+ +
Sbjct: 358 FFKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDYNYA-IDMDT 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R ++       ++ ++  L +    ++FIGYD L    F         
Sbjct: 417 FEKLEVEAKERSRKNTKKTK-NDSDSVFQDL-DPTNTSEFIGYDTLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ I++  EI      G +  ++   TPFYA  GGQ+GD+G    +
Sbjct: 466 --------------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ VH   + +G L T M++   ++   R++ + NH+  HLLH AL
Sbjct: 512 SGTFLVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R +   
Sbjct: 572 EMTLGEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D ++S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++
Sbjct: 632 DVMSSSEIKQFFGDKYGDIVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEA TG+ A +    QD  L  +A+ ++  +  ++ ++  + EE + L    A 
Sbjct: 686 ATGIRRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVAD 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C KI D +++ + ++E + + ++   +A+ K+I +  I L    
Sbjct: 746 LENQLVQQQVKTLLTSCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
           K  +  VL  V++DL  R   V    L A++L   GG  GG+   AQ  
Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQGS 852


>gi|256371739|ref|YP_003109563.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008323|gb|ACU53890.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 854

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/886 (37%), Positives = 475/886 (53%), Gaps = 64/886 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + +R  F E+F + GH  +PS+SL+P  DPTL+FT +GMVPFK  F G+E P Y+  
Sbjct: 1   MDSNDLRRAFREYFVERGHVPVPSASLVPH-DPTLLFTVAGMVPFKPYFLGEEVPPYRRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QKC+RAGGKHNDLD VG T RH TFFEMLGNFSFG YFKE AI  AW L+T+   LD
Sbjct: 60  TSIQKCMRAGGKHNDLDQVGTTARHLTFFEMLGNFSFGDYFKEGAIPYAWGLVTEVLGLD 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RL+ITV+  D+EA ++W +  G+  ++I R+   DN+W M ETGPCGPCSEI++D+GE
Sbjct: 120 PDRLWITVHTSDDEAERIWIEACGVRPERIQRL-DEDNWWQMGETGPCGPCSEIYYDKGE 178

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G   +    ER++EIWNLVFMQ+++        LP   IDTG GLER+  VLQ   
Sbjct: 179 SYGAGGGPAVGSDERFLEIWNLVFMQYDRHPDGSLTPLPAPCIDTGAGLERIVPVLQGHD 238

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG------NNIVNHRVIVDHLRSSSFLIADGILPANE 295
           + ++ DL   L++ ++ +TG +Y G         V  R++ DH R+++FL+ADG++P NE
Sbjct: 239 SVFETDLMWPLMEEAQSLTGRRYGGRFGADAGGDVGLRIMADHARATTFLLADGVVPTNE 298

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRRI+RR +  A+LLG   P++  ++      MG AYPE+ +    I +    E+
Sbjct: 299 GRGYVLRRIIRRLVARAQLLGAKGPVVEPMVRMTAAVMGEAYPEVARELETIVQHAAREE 358

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           ERF  TL  G  LLD  L        + G +AFKL+DT+GLP+++  ++   RG++ +D 
Sbjct: 359 ERFAATLALGRPLLDAALE----GGSVPGALAFKLHDTYGLPIELTMELAAERGVS-VDR 413

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F +A+  QR RAR   LG        +   +  ++G ++F GY+              
Sbjct: 414 AGFEEAMAAQRERARQAGLGT-EAVEHPVSAEVLREHGRSEFTGYEATE----------- 461

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                                 +G ++  A  G  +  V D+TPFY E GGQLGDTG   
Sbjct: 462 ---------------------DEGRLLALASEGDVLVAVLDRTPFYPEGGGQLGDTGTIE 500

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           GDG RL I D  +   G+  HH     G       +   +D + R  L ++H+ATHLLH 
Sbjct: 501 GDGFRLTIIDTDQPVAGVIRHHVGAVEGEPVIGALVRAVVDAERREGLRVHHTATHLLHW 560

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS + PD LRFD TH  P+T  E++ IE  V   I ++  V   +M+
Sbjct: 561 ALREVLGPHVKQQGSLVAPDHLRFDFTHWGPLTPDEIEEIERRVAAEIIRDSVVTVELMD 620

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           R++AI  GA A  G +Y D VRVV       G  S  LCGGTH+   G I  L I SESS
Sbjct: 621 RDEAIRRGAVAFFGDRYGDVVRVV-----HAGESSVELCGGTHLDRLGRIGHLRITSESS 675

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I A  RR+EA+    A          L  L   +   +  +  RV+ I E  ++ +   A
Sbjct: 676 IGANTRRVEAVVQLAALEVAHRDRRLLDELERIVPGGRDGIGERVDRIVERAKRAESELA 735

Query: 776 KRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           + + +   E              +   +  +D + ++ +   ++   +  + +++G    
Sbjct: 736 RERTRTLAERARALAETRGADGLVVARVDGLDQRGVRELAMLVRD-HEGVLGVVIGGVAN 794

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--------GGR 871
              ++   V E    R  A +L R  A+ +GGG G        GGR
Sbjct: 795 GVVALAAAVREGAPWR--ADELLRPVAQAVGGGVGRAEVVAVSGGR 838


>gi|325090131|gb|EGC43441.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 961

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/967 (32%), Positives = 476/967 (49%), Gaps = 99/967 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +         EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRIGARNASH-LVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL  ID   F +A    R +++  S G G  T + +  ++ +          
Sbjct: 435 TRLMAEERGLT-IDNAEFEEA----RLKSKEASKGQGKRTADVVKLTVHD---------- 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 480 ----LGLLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++   D
Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQ-VYGGYILHTGFMKYGSFNVNDSVIAEYD 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 595 ELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIE 654

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V  + +    A   SG  A+ G  Y D VRVVSV  E           
Sbjct: 655 RISTDYIRQNCVVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDP 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + 
Sbjct: 715 RWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGER 774

Query: 745 LASFLKV---SQGNVVGRV--------------------------EEIWEEYRKLQLIHA 775
           L  F K+    Q  +  ++                          +++ E  +  Q + +
Sbjct: 775 LRRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLES 834

Query: 776 KRKLQLNVE--DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           K+ L       +   +K+A  + +  +    + K L   ++ ++ K+Q   + +    KE
Sbjct: 835 KKALDAITGYFEAPENKVAS-HLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKE 893

Query: 834 -KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K      V + L +      D A   + ++ GG  GG+  ++   G    K D+AI  
Sbjct: 894 AGKVVHGCHVAQSLSEQGATPNDWANAVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKA 952

Query: 892 VASFLKK 898
              +L+K
Sbjct: 953 ATEYLEK 959


>gi|328353302|emb|CCA39700.1| alanyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 959

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/968 (32%), Positives = 484/968 (50%), Gaps = 94/968 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+TF +FF+   H  +PSSS+IP +DPTL+FTN+GM  +K IF G   P      
Sbjct: 10  TANKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFAT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI   W+LLTK 
Sbjct: 70  LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKV 129

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY++ +        + D EA + WK + G++ D I+  +  DNFW M + GPC
Sbjct: 130 YGLEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN+VF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ   +NYD D+F  L    +++TG++    +            +RV+ DH+R
Sbjct: 248 FERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L PAL  ++   +P
Sbjct: 308 TLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+ +    I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G 
Sbjct: 368 EVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F  A E  R  ++ +    G                  +
Sbjct: 428 PVDLTRLMAEETGLK-IDDEGFEIAKEASREASKGNGKTQGK-----------------E 469

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
            +  D+    +  K              T  + + + AI    E+++   E    Q++ +
Sbjct: 470 LVKLDVHVLGELEKNSEVPKTDDSYKYGTKNIEASIVAIYNGKELIQSTSEVADDQQLGI 529

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+TPFYAE GGQ+ DTG  + DG+    + +VQ    G  +H   VE G+L     ++
Sbjct: 530 LLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQ-SYAGYVLHTGYVEEGVLSVSDKII 588

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H K +T +EL
Sbjct: 589 AGYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSEL 648

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           + +ED  N++I +N+PV    +        +G  A+ G  Y D VRVVS+          
Sbjct: 649 QKVEDISNEVIKKNVPVFASDVTLAVGKEINGLRAVFGETYPDPVRVVSIGVPVEELVKN 708

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--------- 731
               +    S   CGGTHV+ TG+I    I+ ES I  GIRRI A+T   A         
Sbjct: 709 PSNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQRIARE 768

Query: 732 ----------RSHLMGQDEKLKSLASFLKVSQGNVVGR---------VEE-IWEEYRKLQ 771
                      S    +++KLK     L   Q +V+ +         +E+ + +E +  Q
Sbjct: 769 KNDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVKDELKVRQ 828

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGI 830
              +K+ L   V+D          F++H+    ++K L      ++K+I    + L VG 
Sbjct: 829 KAESKKTLD-TVKDYFNEHEDSPFFVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLIVGN 887

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E K +    V+++ L +          A    GG  GG+ ++ Q  G N    ++AI 
Sbjct: 888 ESEPKIAQGCYVSDNALSKGVVASEVTNVASEFIGGKAGGKGNICQGVGTNPEGINKAIE 947

Query: 891 GVASFLKK 898
            V   LK+
Sbjct: 948 AVTKILKE 955


>gi|294654445|ref|XP_456501.2| DEHA2A03652p [Debaryomyces hansenii CBS767]
 gi|199428887|emb|CAG84453.2| DEHA2A03652p [Debaryomyces hansenii]
          Length = 1021

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/973 (31%), Positives = 479/973 (49%), Gaps = 110/973 (11%)

Query: 4    VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S +R+TFL++F+ K  H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 79   ASRVRSTFLDYFKVKQNHTFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFST 138

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 139  LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAISWSWELLTEV 198

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L+Q RLY+T +  DE        EA   W  + G++ D I+     DNFW M + GPC
Sbjct: 199  YKLEQDRLYVTYFGGDEKQGLQPDLEAKNFWLAV-GVAEDHILPGNLEDNFWEMGDQGPC 257

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           + +    +E+WN+VFMQ+ ++       LP   IDTG+G
Sbjct: 258  GPCSEIHYDRIGG-RNASSLVNMDDPNVLEVWNIVFMQYNREPDSSLRSLPAKHIDTGLG 316

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
             ER+ ++LQ K++NYD D+F+ +     ++TG++                 +RVI DH+R
Sbjct: 317  FERLVSILQNKSSNYDTDVFQPIFNKIREITGVRPYTGKFGSEDRDGIDTAYRVIADHVR 376

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
            + +F I DG +P NEGRGYVLRRI+RR   Y R             L+P +  +    +P
Sbjct: 377  TLTFAITDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVPVVVEQNSEIFP 436

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
            E+++ +  + E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 437  EILKNQQDLTEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 496

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ + +    GL  ID   F +A EE R  ++A +   G    +    +L E  G   
Sbjct: 497  PVDLTRLMAEEAGLK-IDEEGFEKAKEESREASKATNNKAGVSLIKLDVHALSELDG--- 552

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVF 515
                           D+              + + V AI      V+    +G +  ++ 
Sbjct: 553  --------------NDKVPKTDDSFKYDIENIKANVVAIYNGSSFVDSISEAGSQAGILL 598

Query: 516  DQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            D+TPFYAE+GGQ  DTG  + DG+    +++VQ    G  +H   +  G L+ E  ++ T
Sbjct: 599  DKTPFYAESGGQEYDTGKLVIDGVAEFSVSNVQ-VYGGYVLHTGSLLEGSLKLEDEIIAT 657

Query: 575  IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
             D   R  +  NH+ TH+L+ AL  +LG +V Q GS + P+ LRFD +H + +T  EL  
Sbjct: 658  YDELRRWPIRNNHTGTHVLNFALREVLGDNVDQKGSLVAPEKLRFDFSHKQGLTPDELLK 717

Query: 635  IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
            +E   ND I +N  V  + +   DA    G  A+ G  Y D VRVVS+            
Sbjct: 718  VETISNDYIKENKQVYAKDIRLNDAKEIDGLRAVFGETYPDPVRVVSIGTSVEDLLKDPK 777

Query: 683  YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
              +    S  LCGGTHV+ TG+I  L I+ ES I  GIRRI A+TG  A        +  
Sbjct: 778  NSEWHKVSIELCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGTEAHQVQKVASDFD 837

Query: 743  KSL---------------ASFLKVSQGNVVGRV--------------EEIWEEYRKLQLI 773
            K L               A  L VS   +   V              + I ++ + +Q  
Sbjct: 838  KELDHTMGLASGPIKETKAKELGVSLKKLSISVLDKRSLNDKFNKLDKSIKDQLKAVQKE 897

Query: 774  HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             +K+ L++    L+     D   +S +    ++K +   ++ L+K+ +S  I L+  S  
Sbjct: 898  ESKKVLEVVNTWLNAEDAKDY-LVSFVPISANAKAITEAINLLKKQHKSKSIYLITGS-- 954

Query: 834  KKASVLIVVTEDLLDR-FNAVDLARLSAK-------VLGGGGGGGRPHMAQSGGPNGNKA 885
             K +    V+++ + +  +A +LA   +          G        ++ Q  G      
Sbjct: 955  DKVAHGCYVSDEAIAKGIDATNLATAVSSKVGGKAGGKG--------NVVQGMGDKPQGI 1006

Query: 886  DQAIAGVASFLKK 898
            D+AI  +     +
Sbjct: 1007 DEAINELKKLFAE 1019


>gi|261203393|ref|XP_002628910.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239586695|gb|EEQ69338.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 962

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/970 (32%), Positives = 472/970 (48%), Gaps = 97/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           +   +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 13  SALRVRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFAT 72

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK 
Sbjct: 73  LKRAHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKV 132

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L+  RLY+T ++ +         EA +LW  + G++ D ++     DNFW M E GPC
Sbjct: 133 YGLEPDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPC 191

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG
Sbjct: 192 GPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R
Sbjct: 251 YERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIR 310

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 311 TLTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFP 370

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G 
Sbjct: 371 EIRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGF 430

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL  ID   F +A    R +A+  S G G  T + +  ++ +      
Sbjct: 431 PVDLTQLMAEERGLT-IDNAEFEEA----RLKAKEASKGQGKQTADVVKLTVHD------ 479

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                          D               ++S +KAI    + V+       G++  +
Sbjct: 480 --------LGLLETMDNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQ-VYGGYILHTGFMKYGSFNVNDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           + IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVSV  E       
Sbjct: 651 EKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQN 710

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                    S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A        E
Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKE 770

Query: 741 KLKSL---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQ 771
             + L               A  L+V    +    V +V          +++ E  +  Q
Sbjct: 771 FGERLQRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQ 830

Query: 772 LIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            + +K+ L          +  D  + +  +    + K +   ++ ++ K+Q+  + +   
Sbjct: 831 KLESKKALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMQNKSVYVFAA 890

Query: 831 SKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            K   K      V + L        + A   + ++ GG  GG+  +A   G    K + A
Sbjct: 891 DKGAGKVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDA 949

Query: 889 IAGVASFLKK 898
           I     +L+K
Sbjct: 950 IKAATEYLEK 959


>gi|119716634|ref|YP_923599.1| alanyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|205830163|sp|A1SJC7|SYA_NOCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119537295|gb|ABL81912.1| alanyl-tRNA synthetase [Nocardioides sp. JS614]
          Length = 896

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/936 (35%), Positives = 510/936 (54%), Gaps = 87/936 (9%)

Query: 2   SNVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV 57
            + + IR  F+  F+ N     H  +PS+SL+  +DP L+F N+GMVPFK  F GQE P 
Sbjct: 1   MDTAEIRRRFVAHFEHNTTVGAHTPVPSASLL-LDDPNLLFVNAGMVPFKPYFLGQEAPP 59

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
           Y   T+VQKCVR      D+++VG+T RH TFFEM GNFSFG YFKE AI+LAWDL+T+ 
Sbjct: 60  YPRATSVQKCVRT----PDIEDVGKTTRHGTFFEMCGNFSFGDYFKEGAIELAWDLVTRP 115

Query: 118 F-----DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
                  L++ +LY +VY++D EA  LWKK++GL  ++IIR+   +N+WSM   GP GPC
Sbjct: 116 LADGGWGLEESKLYPSVYEDDPEAVALWKKVTGLPEERIIRLGKRENYWSMGVPGPGGPC 175

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDT 226
           SEI +D+G           +  +RY+EIWNLVFMQ E    + +        LPK +IDT
Sbjct: 176 SEILYDRGPDYGPDGDFGPKGEDRYLEIWNLVFMQDELSAVRSKEDFDIAGSLPKKNIDT 235

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284
           GMGLER+A +LQ K N Y+ID+   +IQ +E++TG +Y  + ++ V  RV+ DH+RSS  
Sbjct: 236 GMGLERVAFLLQGKANMYEIDVMFPVIQKAEELTGRRYGADHDDDVRFRVVADHVRSSMM 295

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI DG+ P NE RGYVLRR++RRA+   RLLGY +P +  L P    +MG  Y  L +  
Sbjct: 296 LIGDGVTPGNEARGYVLRRLLRRAVRSMRLLGYEDPALPELFPISRDKMGETYTALHRDW 355

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I     +E+  F +TL  G  + D   + L +     L+GD AF L+DT+G P+D+  
Sbjct: 356 ERISTVAYAEEHAFRQTLRSGTTIFDQATAELKQAGGSQLSGDKAFALHDTYGFPIDLTL 415

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYG-ATQFIGY 460
           ++   +GLA +D + F + + EQR RA+  +        +   +  + +  G   +F GY
Sbjct: 416 EMAAEQGLA-VDEVGFRRLMNEQRQRAKDDAKAKKGQHRDASAYRQVADSLGRPVEFTGY 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D++                          + V+ +V  G +V  A  G  VE++ D+TPF
Sbjct: 475 DVVTD-----------------------EASVRGLVAAGGVVSSAGPGDDVEIILDRTPF 511

Query: 521 YAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE GGQL D G   + +G R+++ DVQ    G+ VHHA V  G +   +     +D + 
Sbjct: 512 YAEGGGQLADQGVIELDNGARVEVRDVQSPVRGLIVHHATVLSGEVSIGLGAHALVDVER 571

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR +S +H+ATH++H A    LG   +Q GS  +P   RFD +    +  + +  +E  V
Sbjct: 572 RRSISRSHTATHMVHKAFREALGETATQAGSENSPGRFRFDFSAVGAVPESVMADVEARV 631

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N+++  +L V   +M++ DA+ SGA AL G KY DRVRVVSV     G  +  LCGGTH 
Sbjct: 632 NEVVLDDLAVHAEVMSQADAVKSGAMALFGEKYGDRVRVVSV-----GDWARELCGGTHA 686

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            S+G++ ++ ++ ESSI +G+RR+EA+ G  A   L  +   +  L+  LKV    +  R
Sbjct: 687 GSSGKLGVVKLLGESSIGSGVRRVEALVGSDAYRFLAREHVLVAQLSDTLKVRPEQLPER 746

Query: 760 VEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           V ++ E+ R+ +    + ++               K+  VN ++H        +++++  
Sbjct: 747 VHDLVEKLREAEKEIERVRVGQLLAAAGELAAGAAKVGPVNLVAHRADGAGGGDVRTLAL 806

Query: 815 ALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
            ++ ++     G+++++G   + K +V+  + ++   R  +A +L R             
Sbjct: 807 DVRGRLPQGEPGVVVVIGAV-DGKVAVVAALNDEARARGLSANELVRAVG---------- 855

Query: 871 RP----------HMAQSGGPNGNKADQAIAGVASFL 896
            P           +AQ GG + ++ D+AI  V + +
Sbjct: 856 -PLVGGKGGGKDDVAQGGGTDASRIDEAITLVTAEV 890


>gi|256825088|ref|YP_003149048.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688481|gb|ACV06283.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
          Length = 893

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/885 (34%), Positives = 455/885 (51%), Gaps = 64/885 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L +F+   H ++PS+ LI  +DP L+F N+GMVPFK    GQ+ P +Q  
Sbjct: 1   METAEIRRRWLAYFEGKDHAVVPSAPLI-HDDPNLLFVNAGMVPFKPYLLGQQTPPWQRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T+RH TFF+M GNFSFG YFK  AI +AW+ LT      
Sbjct: 60  TSVQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKAGAISMAWEFLTTPEAGG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              L +  L+ TVY++D+EAF LW +++ L A++I+R    DN+WSM   GP GP SEIF
Sbjct: 116 GLGLRKDDLWATVYNDDDEAFDLWLELTDLPAERIVRRDEEDNYWSMGVPGPGGPSSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
            D+G    G   G + + +R++EIWNLVFMQ E    + +        LP+ +IDTGMGL
Sbjct: 176 LDRGAEY-GRDGGPAVDEDRFMEIWNLVFMQHELSAVRSKSDFDIAGNLPQQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280
           ER+A+VLQ   N Y+ID    ++  + ++ G++Y  +          + V+ RV+ DH+R
Sbjct: 235 ERIASVLQGVDNLYEIDQVYPVLDRAAEMAGVEYGASSGHIASESHPHDVHLRVVADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S   LI DG++P NEGRGYVLRR++RRA+   RLLG T+P +  LLP     MG +YPEL
Sbjct: 295 SGLMLIGDGVVPGNEGRGYVLRRMLRRAVRSMRLLGVTDPALPELLPISRDLMGESYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPL 398
           +     I +   +E++ F +TL+ G  + D           ++  GD AF L+DT+G P+
Sbjct: 355 VSGWDRISQIAYAEEDAFRRTLEAGTTIFDVAAGQTKDAGQKVFPGDKAFALHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+  ++   +GLA +D   F   + EQR RA+A +    SG      +      GAT + 
Sbjct: 415 DLTLEMAAEQGLA-VDEAGFRGLMTEQRERAKADARAKKSGHANTEVWRELRSLGATDWR 473

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
            Y  L                            V  +V+ GE V     G+  +VV D T
Sbjct: 474 AYTDLATD-----------------------GRVVGLVRDGERVGGLSQGETGQVVLDTT 510

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
            FYAE+GGQ+ D G    DG RL++ DVQ+  +G+  H   V  G +         +D  
Sbjct: 511 SFYAESGGQVADAGIITLDGARLEVVDVQRPVKGLVAHTVKVASGEVTEGADARAEVDPT 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R + +  HS TH++H AL  +LG    Q+GS   P  LR D   +  + +A    +E+ 
Sbjct: 571 WRIEAAQAHSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWNGALDAATRSELEEV 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            N  +  +LPV    M+   A   GA AL G  Y++ VRV+ +    GG  S  LCGGTH
Sbjct: 631 ANLAVRDDLPVSAHWMSLPAAREWGALALFGETYDEDVRVIEI----GGPWSRELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  + +I  L +  ESS+ +G RR+EA  G  A  HL  +   +  L++   V    +  
Sbjct: 687 VQHSSQIGALTLTGESSVGSGSRRLEAFVGLNALRHLATERALVAELSTIAGVQPTELKD 746

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++    ++ +      K Q              ++  +  ++  + EVD  +L++V 
Sbjct: 747 KVSQLVARLKETEREITAMKRQQAQGATAGLVDEAEQVGGIRLVTKELPEVDGGDLRTVA 806

Query: 814 DALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLD-RFNAVDLA 856
             ++ +       +  +S    K  V++  T+   D    A  L 
Sbjct: 807 QDVRGRFGDAAAAVALVSTAGAKPVVVVATTQAARDAGVKAGALV 851


>gi|115481322|ref|NP_001064254.1| Os10g0182000 [Oryza sativa Japonica Group]
 gi|110288715|gb|ABG65948.1| Alanyl-tRNA synthetase, mitochondrial precursor, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113638863|dbj|BAF26168.1| Os10g0182000 [Oryza sativa Japonica Group]
 gi|215694746|dbj|BAG89937.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 999

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/962 (32%), Positives = 461/962 (47%), Gaps = 93/962 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P       
Sbjct: 55  ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 114

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ +
Sbjct: 115 RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 174

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPCG
Sbjct: 175 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 232

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG 
Sbjct: 233 PCTEIHFDRV-GNRDAASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 291

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVT-----------GMKYEGNNIVNHRVIVDHL 279
           ER+ ++LQ K +NYD D+F  +  A  Q+            G +      + +RV+ DH+
Sbjct: 292 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 351

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +P
Sbjct: 352 RTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFP 411

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL   +  I++ ++ E+E F  TL +G          + +    +L+G  AF L+DT+G 
Sbjct: 412 ELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGTVLSGQDAFVLWDTYGY 471

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL+ +D   F+ A+EE R +AR      G         S+     AT 
Sbjct: 472 PVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANATA 523

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                 LR       D          D      S+VKAI    E V  A   +   +V +
Sbjct: 524 -----QLRNQGLASTDDSPKYGYKDND------SVVKAIYTGSEYVSAASGDEDFGLVLE 572

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLT 574
            T FYAE GGQ+ DTG   G      +T+VQ    G  +H     +G   L     +   
Sbjct: 573 STSFYAEQGGQIYDTGKIEGSFGSFNVTNVQ-VFAGYVLHMGSFTKGSKALSVGDKVACK 631

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   +L+ 
Sbjct: 632 VDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRK 691

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------E 682
           IE  VN  I   L V  R +   DA   +G  A+ G  Y D VRVVSV           E
Sbjct: 692 IESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPE 751

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI A+T + A   +       
Sbjct: 752 SKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSID 811

Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IH 774
                         ++ + S+ S L         + ++ GRV ++ +E RK +      +
Sbjct: 812 SEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEEN 871

Query: 775 AKRKLQLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++ ++  ++           F ++H+   +D+  ++  +  ++ +    I++       
Sbjct: 872 IQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVIKVKDQKDLPIMLFSTDEAT 931

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA +   V     +    +D    S   L G GGGG+  +AQ  G   ++  +A+    
Sbjct: 932 NKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVAT 991

Query: 894 SF 895
             
Sbjct: 992 QI 993


>gi|124009945|ref|ZP_01694610.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123984029|gb|EAY24407.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 883

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/934 (32%), Positives = 490/934 (52%), Gaps = 91/934 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +  +IR  FL+FF++  H+++ S+ L+  NDPTLMFTN+GM  FK+ F G +    + V
Sbjct: 1   MDSKTIRQKFLDFFREKQHQIVDSAPLVVKNDPTLMFTNAGMNQFKDFFLGTKTAENRRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ F+L 
Sbjct: 61  ADTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVFELP 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+TV++         D+EAF +WKK   ++ D+II  +  DNFW M ETGPCGPCS
Sbjct: 121 KDRLYVTVFEGDKGDSLEPDQEAFDIWKKY--INEDRIIYASKEDNFWEMGETGPCGPCS 178

Query: 174 EIFFDQGE----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D  +        G    +++  + +EIWNLVF+QF +   +    LP   +DTGMG
Sbjct: 179 EIHIDLRDANEIAKTPGKGLVNQDDPQVVEIWNLVFIQFNRMANKSLQNLPDKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+A  +Q K +NYD D+F+ +IQ   +V G +Y       +  RVI DH+R+ SF I 
Sbjct: 239 FERLAMAIQGKKSNYDTDVFQPMIQYLAKVAGTQYGKEEKIDIALRVIADHIRAISFAIT 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N G GYV+RRI+RRA+ Y    LG+ EP +  L+P L  +    +PEL Q +  
Sbjct: 299 DGQLPGNNGAGYVIRRILRRAVRYGYSYLGFNEPFLHTLVPMLSEQFAEVFPELKQQQAH 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404
           +   +  E++ F +TL  GL LLD V++   +   + + G   F L D +G P D+   +
Sbjct: 359 VSNIIIQEEKSFLRTLANGLKLLDEVVAKTKEKQQKEIAGIDVFTLSDRYGFPSDLTNLV 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               GL GID   F + L++Q+ R++  +              +    G ++FIGYD   
Sbjct: 419 ASENGL-GIDEAGFKEELKKQKLRSQQDAQKSTGDW-------IVLNSGESEFIGYDETS 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   R++  +K                              + E+V + TPFYAE+
Sbjct: 471 SFTKVLRYREIEVKKKK----------------------------QYEIVLETTPFYAES 502

Query: 525 GGQLGDTGCA----IGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEMSLVLTIDY 577
           GGQ+GDTG          + + + D +K+   + +H++      +     ++ +   +  
Sbjct: 503 GGQVGDTGSLEFRAEAGTVTVPVIDTKKE-NDLIIHYSPKNDFTKIADLAQVEVFAQVKE 561

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           Q RR    NHSATHL+H AL  +LG HV Q GS +    LRFD +H+  +T  E+  +E 
Sbjct: 562 QRRRLTENNHSATHLVHSALRQVLGQHVEQRGSLVNDVILRFDFSHNAKMTDEEIAEVER 621

Query: 638 NVNDIIAQNLPV-VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
            VN+ I +N+ +   R +  ++AI S GA  L G KY D VRV++ +      +S  LCG
Sbjct: 622 IVNEKIRENIALDERRAVPYKEAIESLGATGLFGEKYGDTVRVITFD----ENYSRELCG 677

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV STG I    I++E+S+ +G+RRIEA+T  +A  ++  Q   +  +   LK +  +
Sbjct: 678 GCHVPSTGVIGFFKIITEASVASGVRRIEAVTATKAEEYVQNQVALVNQVKDLLK-NPKD 736

Query: 756 VVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELK 810
           +   +E + +E     ++++++  ++   L    L    +   +NF++  +S   +  LK
Sbjct: 737 LPKAIESLIKEKTDLSKQIEVLENQQVQALKQGLLDTVKQTNGINFIAQKVSLPSADALK 796

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGG 868
           ++   ++ K Q  + M++    + K  + ++++++L+     NA  + +  A+ +     
Sbjct: 797 NLAFDVR-KNQDNLFMVLASDIKGKPQIAVMISDNLVEEKSLNAGKIVKELAREI----- 850

Query: 869 GGR------PHMAQSGGPNGNKADQAIAGVASFL 896
             +         A +GG +    D+ +     F+
Sbjct: 851 --KGGGGGQAFFATAGGKDATGLDKVVERAEEFV 882


>gi|330794423|ref|XP_003285278.1| alanyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325084730|gb|EGC38151.1| alanyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 944

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/971 (31%), Positives = 464/971 (47%), Gaps = 102/971 (10%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
            +V+ IR TF+EFF     H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P    
Sbjct: 1   MDVNQIRKTFIEFFVNKAEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 61  AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAISWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW +   L  ++++     +NFW M + G
Sbjct: 121 EVYGLDKERLYVTYFRGDPEKGLEPDNEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+      G P  + +    IEIWNLVF+QF ++  +    LP   +DTG
Sbjct: 179 PCGPCSEIHYDKVPG-RNGAPFVNADDPTLIEIWNLVFIQFNREADKSLRPLPNKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT----------GMKYEGNNIVNHRVIVD 277
           MGLER+ +++Q+   NYD D+FK + +A ++VT          G +      + +RVI D
Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFKPIFEAIQEVTGYPEPYGGKVGAEDSQQVDMAYRVIAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ SF IADG  P+ +GRG VLRRI+RRA+ Y +  L         L+  +    G  
Sbjct: 298 HIRTLSFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVVQNFGEF 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           YPEL +    I   L  E++ F KTL++G+   + ++     D +L+   A+ L    G 
Sbjct: 358 YPELRKKPEHIRMVLTREEDMFNKTLEKGIQEFEKMIKKTT-DGVLSAPNAYFLSTVCGF 416

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +   +GL  +DI  F +  E Q    R       +  T               
Sbjct: 417 PIDLTTIMAEEKGLK-VDIQGFEKLCEAQSEIDRKRQKEKKTELT--------------- 460

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                    + ++K +   +           V + VKAI    E V+    GQ   +V +
Sbjct: 461 ----LGAEANAWLKNNNIKITDDSFKYQQKEVQTTVKAIWNGKEFVDTVPKGQLCGIVLE 516

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLV 572
            T FY E GGQ+ D G    + D          K   G  +H   +  E   L+    + 
Sbjct: 517 STNFYPEQGGQIYDVGQLSFVDDQKTAFDVKDCKVFGGYVLHIGYLSYECTELKVGDKVE 576

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            T+DY  R  +  NH++TH++++AL ++LG  + Q GS +     RFD +  + +T  EL
Sbjct: 577 STVDYTRRSPIMSNHTSTHMVNYALKSVLGEGIEQRGSFVDASRFRFDFSFGRAVTKDEL 636

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVS 680
             I+  VND+I + L V  + +    A   +G  A+ G  Y D VR           + +
Sbjct: 637 AKIDQIVNDLIFKQLNVYAQEVPLAKAKTINGLRAVFGEVYPDPVRVVSVGVPVDQLIEN 696

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               +   +S   CGGTH+++T +  L  I+SE ++ AG+RRI A+TG  A +      E
Sbjct: 697 PTNAEWANYSIEFCGGTHLTNTKQAELFTIISEETLGAGVRRIVAVTGSEATAAHELNKE 756

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRK---------------LQLIHAKRKLQLNVED 785
                   LK++   +   +  + E  +                 +L   +R L   VE+
Sbjct: 757 LELRFNKALKLTGSELSKEIVALLETLKSSCISQAVRYNLVEAMKELQSIQRVLAKEVEN 816

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMD----------------ALQKKIQSGIIMLVG 829
           L   + + +     II E+ SK  +  +D                 +Q K     +ML+ 
Sbjct: 817 LQILESSKIT--ERIIQELTSKPSELYVDLVNLGSNTTVITDTIKKIQAKSNQTAVMLIS 874

Query: 830 ISKE-KKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
             +E  K + + +V +D  +     A        +VL GG GGG+  +AQ  G   +K D
Sbjct: 875 PDEEKGKVTCIGIVPKDSPISKSVAANVWVSKVTEVL-GGKGGGKAEVAQGVGSKLDKID 933

Query: 887 QAIAGVASFLK 897
           +AI     F K
Sbjct: 934 EAILVARDFAK 944


>gi|225011405|ref|ZP_03701843.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225003908|gb|EEG41880.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 870

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/922 (35%), Positives = 485/922 (52%), Gaps = 81/922 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  FL+FF+   H+++PS+ ++  NDPTLMFTN+GM PFK  F G   P  + 
Sbjct: 1   MKSF-EVRQQFLDFFESKKHKVVPSAPMVIKNDPTLMFTNAGMNPFKEYFLGNAVPSSKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK+ AI+ AW+LLT+ + +
Sbjct: 60  VTDTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTEVYKI 119

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  +LY+T++        ++D EAF  WK I  L  ++I+     DNFW M + GPCGPC
Sbjct: 120 DPNKLYVTIFEGAPEEGIEKDNEAFDFWKAI--LPEERILLGNKQDNFWEMGDQGPCGPC 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    +++  + IE+WNLVF++F ++       LP+  IDTGM
Sbjct: 178 SEIHVDIRSEEEKAKVSGAELVNQDHPQVIEVWNLVFIEFNRKANGSLEKLPEKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+  VLQ  T+NYD D+F  LI+  E +T   Y      +   RVI DH+R+  F I
Sbjct: 238 GFERLCMVLQNTTSNYDTDVFTPLIREIETLTKSTYGEKQDTDRAIRVIADHIRTVYFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG+A+PELI+ + 
Sbjct: 298 ADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIHLLVNTLSQQMGTAFPELIREQQ 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L    +R E+  F KTLD+GLVLL+ ++++  K + ++G   F+LYDT G P D+   I 
Sbjct: 358 LAFNVIREEENSFLKTLDQGLVLLESLITN-SKSKKIDGSKVFELYDTFGFPFDLTALIA 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G + +D   F +A+E Q            + +    W  L+E     +F+GYD L  
Sbjct: 417 GEKGFS-VDEEGFQKAMEVQ-----KKRSRAAAASKAGDWVILQEDNVE-EFVGYDHLSV 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              +   RK+                             A  G   ++VF+ TPFY E G
Sbjct: 470 KVKITRYRKMTT---------------------------AKEGDFYQLVFNLTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G        +      KK   + VH    +    + E +    +D + R++ S 
Sbjct: 503 GQVGDKGYLEASNGDIFYVLDTKKENNLIVHQ--TKSIPSKLESTFTAVVDPKQRQRSSS 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHL+H AL ++LG+HV Q GS +     RFD +H   +T+ ELK++E  VN  I +
Sbjct: 561 NHTATHLMHQALRSVLGNHVEQKGSMVHSGMFRFDFSHFAKVTAEELKAVEQFVNARIQE 620

Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +P+   R      AI  GA AL G KY D VR +          S  LCGGTHV++T  
Sbjct: 621 GIPLEEGRNTPYNSAIKEGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVANTAV 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I SES++ +GIRRIEAITG  A+ +   Q   L+++   LK +Q  +   ++ + 
Sbjct: 675 IWHFKITSESAVASGIRRIEAITGDAAKKYFEEQTSLLENVNELLKQAQDPL-KAIQSLQ 733

Query: 765 EEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKK 819
            E   L+      +K K Q+  +DL   KI  ++ +    SEVD     +K +   +  +
Sbjct: 734 SENTALKKELSVLSKLKTQILKDDL-LQKIKTIDGIQFAASEVDIDPQGMKDLSFEIGSQ 792

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAV----DLARLSAKVLGGGGGGGRPH 873
           + + +I+++G  K  K  +   V++ L+     +A     DL +      GG     +P 
Sbjct: 793 LDN-VILVLGSVKSGKPLLSCYVSKSLVADKGKDASAFIRDLGKFIQGGGGG-----QPF 846

Query: 874 MAQSGGPNGNKADQAIAGVASF 895
            A +GG N    ++A+      
Sbjct: 847 YATAGGKNNEGMNEALDAAQGI 868


>gi|239608271|gb|EEQ85258.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 962

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/970 (32%), Positives = 472/970 (48%), Gaps = 97/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           +   +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 13  SALRVRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFAT 72

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +WDLLTK 
Sbjct: 73  LKRAHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKV 132

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L+  RLY+T ++ +         EA +LW  + G++ D ++     DNFW M E GPC
Sbjct: 133 YGLEPDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPC 191

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG
Sbjct: 192 GPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMG 250

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R
Sbjct: 251 YERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIR 310

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 311 TLTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFP 370

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G 
Sbjct: 371 EIRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGF 430

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL  ID   F +A    R +A+  S G G  T + +  ++ +      
Sbjct: 431 PVDLTQLMAEERGLT-IDNAEFEEA----RLKAKEASKGQGKQTADVVKLTVHD------ 479

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                          +               ++S +KAI    + V+       G++  +
Sbjct: 480 --------LGLLETMNNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGI 531

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++
Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQ-VYGGYILHTGFMKYGSFNVNDSVI 590

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L
Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           + IE    D I QN  V  + +    A   SG  A+ G  Y D VRVVSV  E       
Sbjct: 651 EKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQN 710

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                    S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A        E
Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEAHEVQRIAKE 770

Query: 741 KLKSL---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQ 771
             + L               A  L+V    +    V +V          +++ E  +  Q
Sbjct: 771 FGERLQRFDKMELGPQKEMEAKLLQVDLNQLTISAVEKVRFRERFTQIHKKVVEGQKAAQ 830

Query: 772 LIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            + +K+ L          +  D  + +  +    + K +   ++ ++ K+Q+  + +   
Sbjct: 831 KLESKKALDAITGYFETPENKDAPHLVLQLPISANPKAVSDSLNFVKTKMQNKSVYVFAA 890

Query: 831 SKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            K   K      V + L        + A   + ++ GG  GG+  +A   G    K + A
Sbjct: 891 DKGAGKVVHGCHVAQSLSAQGATPNEWANTVSSIV-GGRAGGKAPVAIGNGTEAEKLEDA 949

Query: 889 IAGVASFLKK 898
           I     +L+K
Sbjct: 950 IKAATEYLEK 959


>gi|242085328|ref|XP_002443089.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor]
 gi|241943782|gb|EES16927.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor]
          Length = 1006

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/963 (31%), Positives = 457/963 (47%), Gaps = 92/963 (9%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
                +R  ++ FF    H   PSS ++P +DPTL+F N+GM  +K +F G   P      
Sbjct: 60   TARRVREQYISFFVSKEHTRWPSSPVVPVDDPTLLFANAGMNQYKPVFLGTAAPDSPLGR 119

Query: 60   --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ 
Sbjct: 120  LRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTQV 179

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L   R+Y T +  DE        E+  +W K   L  +K++   + DNFW M +TGPC
Sbjct: 180  YKLPTDRVYATYFGGDEKSGLAADVESKNIWLKY--LPKEKVLPFGSKDNFWEMGDTGPC 237

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG
Sbjct: 238  GPCTEIHFDRI-GNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLRPLPAKHVDTGMG 296

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVT-----------GMKYEGNNIVNHRVIVDH 278
             ER+ ++LQ K +NYD D+F  +  A  Q+            G    G   + +RV+ DH
Sbjct: 297  FERLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPYSGKVGSDDIGKVDMAYRVVADH 356

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
            +R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +
Sbjct: 357  IRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVNVFVQLMGDVF 416

Query: 338  PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395
            PEL   +  I++ +R E+E F  TL +G          +  +   +L+G  AF L+DT+G
Sbjct: 417  PELKDNEKKIKDIIRDEEESFENTLAKGYEKFKKAADAVKDNGGTVLSGQDAFVLWDTYG 476

Query: 396  LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
             P+D+ + +    GL  +D   FN ++EE R +AR      G  +               
Sbjct: 477  YPIDLTEVMAIDYGLT-VDKEGFNASMEEARQKARNARNKSGGKSIAL------------ 523

Query: 456  QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                 D    +   K+        P         S+VKAI    E +  A   +   +V 
Sbjct: 524  -----DANATAHLRKQGLASTDDNPKFLWPKEHESVVKAIYTGSEYITTATGDEDFGLVL 578

Query: 516  DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVL 573
            + T FYAE GGQ+ DTG   G      + +VQ    G  +H     +G  +L    S++ 
Sbjct: 579  ESTSFYAEQGGQIFDTGSIEGSFGTFNVNNVQ-VFAGYVLHIGSFAKGSKVLSLGDSVIC 637

Query: 574  TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             +DY  R  ++ NH+ TH+L+ AL  +LG HV Q GS + P+ LRFD +H KP+   +L+
Sbjct: 638  KVDYNRRTLIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLR 697

Query: 634  SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             IE  VN  I   L V    +  EDA   +G  A+ G  Y D VRVVSV           
Sbjct: 698  KIESIVNQQIKDELGVYALEIKLEDAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLADP 757

Query: 683  -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI---TGQRARSHLMGQ 738
              ++    S+ LCGGTH+++T +     ++SE  I  G+RRI A+      +A       
Sbjct: 758  DSKEWLSISTELCGGTHITNTRDAKAFALLSEEGIAKGVRRITAVTAGCATQAMELASSI 817

Query: 739  DEKLKSLASFLKV---------------------SQGNVVGRVEEIWEEYRKLQLIHAKR 777
            D  +   +                           + ++ G+V ++ +E RK +    ++
Sbjct: 818  DSDINEASQLEGALLEKKIASIKSGLDAAAIPAAKKADLRGKVSKLEDELRKAKKKMGEQ 877

Query: 778  KLQLNVEDLSCHKIADVNF-----MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +Q  V+       A ++      ++H+   +D+  ++  +  +  K    I++      
Sbjct: 878  NIQKAVKSAMDAAEAALSGNKLFCVTHVDVGLDTTAVREAVIKVMDKKGLPIMLFSTDEA 937

Query: 833  EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
              KA +   V  +  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+A  
Sbjct: 938  SNKAVIYAGVPPNAPNGFKVLDWLTPSIAPLKGRGGGGKNGIAQGQGSDASQLKEAMALA 997

Query: 893  ASF 895
             S 
Sbjct: 998  NSI 1000


>gi|89890332|ref|ZP_01201842.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89517247|gb|EAS19904.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 873

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/918 (35%), Positives = 480/918 (52%), Gaps = 95/918 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR TFL+F++   HE++ S+ ++  NDPTLMF N+GM PFK  F G     Y  
Sbjct: 1   MKS-QQIRQTFLDFYKSKQHEVVASAPMVIKNDPTLMFVNAGMNPFKEYFLGINDSKYSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +
Sbjct: 60  IADSQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVYKI 119

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+  LY+T+++         D EA+  WK++  ++ D+I+     DNFW M + GPCGPC
Sbjct: 120 DKDCLYVTIFEGDTSENLERDTEAYDYWKEL--IAEDRILNGNKKDNFWEMGDQGPCGPC 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + +EIWNLVFMQ+++        LP   +DTGM
Sbjct: 178 SEIHVDIRTAEEKAAVDGASLVNADHPQVVEIWNLVFMQYKRMADGSLKNLPAQHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+A V+Q   +NYD D+F  LI+  E +TG  Y       +  RVI DH+R+ SF I
Sbjct: 238 GFERLAMVMQGVQSNYDTDVFTPLIREIETITGHAYGKTEQEDIAIRVIADHVRAVSFSI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L  +MG A+PEL   K 
Sbjct: 298 ADGQLPSNNGAGYVIRRILRRAIRYGFTYLNKKEPFIYMLVNTLSKQMGDAFPELKSQKN 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
           LI   ++ E++ F + LD+GLVLLD +++    +   I++G+ AF+LYDT+G P+D+   
Sbjct: 358 LILNVIKEEEQSFLRALDQGLVLLDSMITAAKSNSQNIIDGNKAFELYDTYGFPIDLTAL 417

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL  +G+  +D   F +A+  Q+ R+RA S    S  TE             +FIGYD L
Sbjct: 418 ILREKGME-LDEAGFEKAMAAQKQRSRAASETTTSDWTE------LRSDDTQEFIGYDKL 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +   RKV  +K                            G   ++VF+ TPFY E
Sbjct: 471 EADVRISRYRKVTTKK---------------------------DGDLYQLVFNMTPFYGE 503

Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           +GGQ GD G      G  + I D +K+  G  VH  + +      E S    +D   R +
Sbjct: 504 SGGQTGDKGYLESPSGDTIYIIDTKKE-NGQTVH--LTKNLPKDLEGSHKAVVDANQRHR 560

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            S NH+ATHLLH AL  +LG HV Q GS +    LRFD +H   +T  +L+ +E+ VN  
Sbjct: 561 TSSNHTATHLLHQALRKVLGDHVEQKGSMVRSASLRFDFSHFAKVTPEQLQEVENFVNAR 620

Query: 643 IAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I + LP+     N  + A+  GA AL G KY D VR +          S  LCGGTHV++
Sbjct: 621 IREQLPLEENRTNTYDAAVEDGAMALFGEKYGDVVRTIKFGK------SYELCGGTHVAN 674

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T ++    I+SE ++ AGIRRIEAI+    +     Q      + + LK +  N    + 
Sbjct: 675 TADVWHFKIMSEGAVAAGIRRIEAISSDAVKDFFAEQSRHFDEIKTILKSNTKNPADAIA 734

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDA 815
           ++ +E   L+    +  L+    +L          I  VNF++   +++D+K +K +   
Sbjct: 735 QLQDENAALKKEIEQL-LKAKAGNLKGDLIASAQDINGVNFIATQ-TDLDAKSVKELAFE 792

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR-- 871
           + ++    + +++G S   KA++ ++++++L+     NA  + R            G+  
Sbjct: 793 I-EREMDNLFLIIGASNGDKATLTVMISKNLVEEKDLNAGSIVREL----------GKHI 841

Query: 872 -------PHMAQSGGPNG 882
                   H A +GG N 
Sbjct: 842 QGGGGGQAHFATAGGKNP 859


>gi|308805977|ref|XP_003080300.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|122158402|sp|Q015G2|SYAP_OSTTA RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|116058760|emb|CAL54467.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 945

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/913 (35%), Positives = 463/913 (50%), Gaps = 71/913 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR  FLEF++  GH   PS+SL+P  DPT++ T +GM+ FK +F GQ +      TT QK
Sbjct: 67  IRRRFLEFYEARGHSRQPSASLVP-EDPTVLLTIAGMLQFKPVFMGQREREMPRATTTQK 125

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVR     ND++NVG T RHHTFFEMLGNFSFG YFK  A + AW+L T EF L+  R++
Sbjct: 126 CVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREACEWAWELATNEFGLNPERVW 181

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ++V+ ED+EAF +W+ + G+   +I R+   DNFW+   TGPCGPCSE+++D      G 
Sbjct: 182 VSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYDFHPE-RGL 240

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                ++  R+IE +NLVFM+  +        L   +IDTGMGLERMA +LQ  +NNY+ 
Sbjct: 241 DGADLDDDSRFIEFYNLVFMELNRDADGGIKPLKNKNIDTGMGLERMAQILQGVSNNYET 300

Query: 247 DLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           DL + +I  +  + G+ Y           +VI DH R+ +++I+DG+  +N GRGY++RR
Sbjct: 301 DLIRPIIDKAASMAGLDYASCSATQKQQLKVIGDHTRAVTYMISDGVFASNIGRGYIVRR 360

Query: 304 IMRRAMCYARLLGYTE-----PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           ++RR +   RLLG             +     +      P++++    I   L  E+  F
Sbjct: 361 LLRRVVRNGRLLGIKPADGQSAFTPSIAEVAISMSEECDPQVVKNTARILAELEREELSF 420

Query: 359 GKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            KTL RG  +L  ++      +  L+G  AF LYDT+G PLDI  D+    G+A +D+  
Sbjct: 421 QKTLGRGEEMLAELIEKAKDSKSGLSGKDAFTLYDTYGFPLDITTDVASEAGIA-VDLEG 479

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +A+ EQRS ++A    +       +     E    ++FIGYD +              
Sbjct: 480 FEKAMAEQRSMSQAAHQTVDVTAGNALAQVADELGAMSEFIGYDNISSDV---------- 529

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IG 536
                       S V AIV  GE VEEA  G +V+VV D TPFYAE+GGQ+GD G     
Sbjct: 530 ------------SNVLAIVSGGESVEEASGGARVDVVLDVTPFYAESGGQVGDNGFLHSA 577

Query: 537 DGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           DG  L++TDVQK   G I VH A V +G ++    +   +D   RR+   NH+ATHLL  
Sbjct: 578 DGAVLKVTDVQKAGGGRIIVHSATVVKGSIKKGSQVSANVDENARRRARNNHTATHLLQS 637

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG  VSQ GS    D LRFD    K +T A+L  +E  VN  I+Q+  +    M 
Sbjct: 638 ALKKVLGDDVSQAGSLCGFDRLRFDFNCPKAVTEAQLLEVETLVNGWISQSADLTAEEMP 697

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              A   GA  + G KY D VRVV V        S  LCGGTHVS+T EI    I+SE+ 
Sbjct: 698 IAAAKEKGATMMFGEKYGDVVRVVDVPG-----ISMELCGGTHVSNTAEIGGFKIISEAG 752

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +GIRRIEA+ G      L  +D  +K LAS L+V    +  RV  + ++    Q +  
Sbjct: 753 IASGIRRIEAVAGAGVVELLQQRDAVVKQLASTLRVPPEEIASRVSGMQKDLVAAQKLAE 812

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             + +L V   +        + +   +   +  VD   LK   + L  ++  G  +++G 
Sbjct: 813 SLRGELAVAKANALVSEARAVGESKVLVARLDGVDPGALKVAAENLATQLGDGAAVILGS 872

Query: 831 SKEKKASVLIVVTEDLLD--RFNAVDLA---------RLSAKVLGGGGGGGRPHMAQSGG 879
           +      ++ +    +       A  +              K              Q+GG
Sbjct: 873 ANGDNVGLVALFDTKVQKDGDLKAGQVLGAAAKRCGGGGGGKPGFA----------QAGG 922

Query: 880 PNGNKADQAIAGV 892
            +  + D A+   
Sbjct: 923 RDATQLDAALDEA 935


>gi|304383973|ref|ZP_07366429.1| alanine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304334865|gb|EFM01139.1| alanine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 875

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/919 (35%), Positives = 498/919 (54%), Gaps = 75/919 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++ +FF++ GH ++PS+ ++  +DPTLMFTN+GM  +K+I  G   P  +  
Sbjct: 4   MTANEIRDSYKKFFEEKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTGNPEPRRR 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI  AW+ L     LD
Sbjct: 64  ADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDYAWEYLVDVLQLD 123

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            + LY+TV++         D EA   W+K   L AD II+   +DNFW M +TGPCGPCS
Sbjct: 124 PKDLYVTVFEGSPEEQLEYDSEAASYWEK--HLPADHIIKGNKHDNFWEMGDTGPCGPCS 181

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    Q +    G    +++  + IEIWN+VFMQ+ ++       L    IDTGMG
Sbjct: 182 EIHLDSRTPQEKAEISGAALVNKDNPQVIEIWNIVFMQYVRKANGALEPLSMKVIDTGMG 241

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
            ER+   LQ K +NYD D+F+ +I+   +++G+ Y  E    V  RV+ DHLR+ +F IA
Sbjct: 242 FERLVRALQGKNSNYDTDIFQPIIREITKLSGITYGAEEQTDVAMRVVADHLRAVAFSIA 301

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP N   GYV+RRI+RRA+ YA   LG  E  +  LLP L  EMG AYPEL   + L
Sbjct: 302 DGQLPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFLHRLLPVLIKEMGDAYPELPAQREL 361

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E++ F +TL++G+ LL   +  +     ++L+G  AF+L+DT+G PLD+ + I
Sbjct: 362 IGRVMKEEEDSFLRTLEKGINLLTAEIERMQTEGRKVLDGVQAFRLFDTYGFPLDLTELI 421

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
               G + +D   FN  +++Q+ RAR  +           W +L++  G  QF+GYD   
Sbjct: 422 CREHGYS-VDEAQFNAEMQKQKDRARNAAQ-----VENSDWVALRQ--GEQQFVGYDYTE 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +K                                E+V D TPFY E 
Sbjct: 474 HECHILRYRKVTQKKNTY----------------------------FELVLDYTPFYGEM 505

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  + +   +++ D  K+     +H  IV       E + +  +D + R   +
Sbjct: 506 GGQVGDTGVLVSEDETVEVIDT-KRENNQSIH--IVSALPKNLEANFMACVDTEKRAASA 562

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLL + L  +LG HV Q GS ++ D LRFD +H + +T  EL+ +E  VN +I 
Sbjct: 563 ANHTATHLLDYVLKQVLGEHVEQKGSYVSADTLRFDFSHFQKVTDDELRQVERMVNAMIR 622

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           Q++P+        E+A   GA +L G KY D+VRVV          S   CGG H +STG
Sbjct: 623 QDIPLDEHRDTPIEEAKQMGAISLFGEKYGDKVRVVRFGP------SCEFCGGIHAASTG 676

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I +  IVSESS+ AGIRRIEA+TG+         ++ L+ + +    +  ++   +E+ 
Sbjct: 677 RIGMFKIVSESSVAAGIRRIEALTGKLCEEMFYSVEDTLRDIKALFN-NAKDLRTVLEKY 735

Query: 764 WEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            +E+  ++    + + Q      ++      +   +  +  ++  ++++  K ++  +++
Sbjct: 736 MDEHDNMRREIEQFQAQAVERMKSMLIERAVERRGIKVVKAVLP-IEAQVAKDLVFKIRE 794

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            I   ++ +VG +  +K  + I++++D++   + NA  + R +AK++GGGGG G+PH A 
Sbjct: 795 AIPQHLLCVVGSTAHEKPLLSIMLSDDMVKEQQLNAGQMVREAAKLIGGGGG-GQPHYAS 853

Query: 877 SGGPNGNKADQAIAGVASF 895
           +GG N +  + AI  V   
Sbjct: 854 AGGKNLDGINAAIDKVIEL 872


>gi|260903835|ref|ZP_05912157.1| alanyl-tRNA synthetase [Brevibacterium linens BL2]
          Length = 884

 Score =  771 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/919 (35%), Positives = 494/919 (53%), Gaps = 58/919 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L++F+ NGH ++PS+S+I   DP+++F  +GMV F    TG+E   +   
Sbjct: 1   MKTAEIKQRWLDYFEANGHAVVPSASVISS-DPSILFNIAGMVQFIPYLTGREPAPFNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR G    D++ VG+T RH TFF+M GNFSFG YFK  AI+ AW LLT      
Sbjct: 60  TSVQKCVRTG----DIEEVGKTTRHGTFFQMNGNFSFGDYFKREAIRFAWGLLTNSVDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+  L+ TV+++D E   LW + + +  ++I      DNFW   + GP G CSEI+
Sbjct: 116 GLGFDKNLLWATVHEDDLETIDLWLEETSIPRERIQPRDNEDNFWHTGQPGPGGYCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFM+FE    + +        LP  +IDTGMGL
Sbjct: 176 FDRGPDY-GVEGGPVADEDRYIEIWNLVFMEFELSEVRSKVDFDIAGELPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ   N Y+ID    +I+A+ +++G +Y  ++  +   RV+ DH+RSS  +I D
Sbjct: 235 ERVAFLLQGVENMYEIDEVFPVIEAASRLSGHRYGADHDADVQMRVVADHVRSSLIIIGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGY+LRR++RRA+   RLLG T  ++  LLP     M  +YPEL      I 
Sbjct: 295 GVRPGNEGRGYILRRLLRRAVRAMRLLGVTSEVLPELLPVSMESMKLSYPELETDFDRIS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
               +E++ F +TL+ G  L     + L   D+ L+GDVAF L+DTHG P+D+  ++   
Sbjct: 355 RIAYAEEKAFLRTLESGTQLFQNAAASLPASDKTLSGDVAFALHDTHGFPIDLTLEMASE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQFIGYDLLRGS 466
           +G+  +D   F   + EQR+RA+A +     G   +   +S   + GA++F+GYD L   
Sbjct: 415 QGV-NVDEEGFRALMSEQRTRAKADAKAKKGGGHADLSAYSALLEDGASEFVGYDRLEAD 473

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                  S V+ IV  G   E    GQ  +++ D TPFYAEAGG
Sbjct: 474 -----------------------SRVRGIVVDGLAQEVLTPGQTADLILDLTPFYAEAGG 510

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G   G G   ++ DVQ   +G+  H   V  G +     ++  +D+ +R Q S  
Sbjct: 511 QRADIGLIKGHGFTARVLDVQNPIKGLPAHRVEVIDGEIHVGAEVLAVVDHDHRFQGSQA 570

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHL+H AL  ILG+H  Q GS   P  +RFD +  +  +      IED  N  +  N
Sbjct: 571 HTATHLVHAALREILGTHAVQAGSMNQPGYMRFDYSFPEAPSQQMRAEIEDVANLAVRSN 630

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
             V T  +  EDA  SGA AL G KY + VRVV +    GG  S  LCGGTHV S+ E+ 
Sbjct: 631 YEVGTEFLPFEDARKSGAMALFGEKYPNIVRVVDI----GGPFSRELCGGTHVGSSSEVG 686

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            + ++SE+S+ +G+RRIEA  G  A   L  +   + SL+  LKV   +V  RV ++  +
Sbjct: 687 PISVLSEASVGSGVRRIEAAVGMDAFRSLAAERSIVSSLSDMLKVPGTDVKERVGDLMSK 746

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEV-DSKELKSVMDALQKKI 820
            +  +   A+   Q  +        +   +    F+   + +V ++ ++++V+  L+ ++
Sbjct: 747 LKDAEKEIARLNSQQLLASAGKFLDNAETVGSTLFVVADLGDVTNAGDIRTVVTDLRGRV 806

Query: 821 QSGIIMLVGI-SKEKKASVLIVVTEDLLDRFN-AVDLARLSAKVLGGGGGGGRPHMAQSG 878
                +++GI +   K  V+I  T    +  + A  L  L+   LGGGGG G+P +AQ G
Sbjct: 807 NERSAVVLGIGTGNSKPVVVIATTAAAREEGHQAGKLVSLACGELGGGGG-GKPDLAQGG 865

Query: 879 GPNGNKADQAIAGVASFLK 897
           G + +    AIA V + L+
Sbjct: 866 GSDVSAIPSAIAAVKAALQ 884


>gi|152966976|ref|YP_001362760.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|205830072|sp|A6WCF7|SYA_KINRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|151361493|gb|ABS04496.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 893

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/922 (35%), Positives = 493/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L+FF++  H ++PS+SL+   DP+LMFT +GMVPF    T Q    Y+  
Sbjct: 1   MQTAEIRRRWLDFFERKEHTVVPSASLVSS-DPSLMFTVAGMVPFIPYLTAQVPAPYKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D+D VG+T RH TFF+M GNFSFG YFK  A+  AW+LLT      
Sbjct: 60  TSVQKCLRT----LDIDEVGKTTRHGTFFQMNGNFSFGDYFKREAVAFAWELLTTPEADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D  RL+ TVY +D+EAF+LW+++ G+ A++I R    DN+W+  + GP GPCSEI+
Sbjct: 116 GLGFDPERLWTTVYLDDDEAFQLWREV-GMPAERIQRRGKADNYWNTGQPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           FD+G    G   G   + +RYIEIWNLVFMQ++    + +        LP  +IDTGMGL
Sbjct: 175 FDRGPAY-GAEGGPEADEDRYIEIWNLVFMQYQLSAVRTKVDFDVEGELPAKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A + Q   N Y+ID  + ++  + +++G +Y     + V  RV+ DH+RS+  LI D
Sbjct: 234 ERVAFLKQGVDNMYEIDEVRPVLDKAAELSGRRYGAVHEDDVRMRVVADHVRSALMLIGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEG GYVLRR++RRA+   RLLG  EP + HLLPA    M ++YP+L      I 
Sbjct: 294 GVTPGNEGAGYVLRRLVRRAVRAMRLLGVEEPALPHLLPASMEVMSASYPQLRSDFERIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
               +E++ F +TL  G  + +  ++         L+G+ AF L+DT+G P+D+  ++  
Sbjct: 354 AVAYAEEDAFRRTLVSGTAIFETAVAQTKAAGGSSLSGERAFALHDTYGFPIDLTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF--SLKEKYGATQFIGYDLLR 464
             G+ G+D   F   + EQ  RA+A +    +G  +   +  +L++      F GY+   
Sbjct: 414 EAGV-GVDEPGFRALMAEQVGRAKADAKAKKTGGVDLAIYRSTLEQLPAPVVFTGYEAAA 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
           G                        + +  ++Q G     A +G  VEVV D+TPFYAE 
Sbjct: 473 G-----------------------EARISVVLQGGVSTPSAPAGTDVEVVLDRTPFYAEG 509

Query: 525 GGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G      G  L ++DVQ+   G++VH   V  G L    ++   +D   RR +
Sbjct: 510 GGQLADHGTVTTTSGAVLAVSDVQQPVRGLYVHKGTVTSGELVAGDAVHAVVDAGRRRSI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S  H+ATHL+H  +   LG   +Q GS   P  +RFD   +  +    ++ IE  VN+ I
Sbjct: 570 SRAHTATHLVHQVVREHLGDTATQAGSQNAPGRMRFDYRSTAQVAGDVVRDIEAVVNERI 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +L V   +M+RE A+ SGA AL G KY ++VRVVS+    G   S  LCGGTH  ++ 
Sbjct: 630 HDDLEVSAAVMDRESALNSGAMALFGEKYGEKVRVVSI----GEDWSKELCGGTHTLTSQ 685

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ L+ IVSESSI +G RRIEA+ G  A   L  +   +  L   +K     +  R+  +
Sbjct: 686 QVGLVSIVSESSIGSGARRIEALVGADAFDFLTREHLLVNQLTEVVKARPEELPDRIGAL 745

Query: 764 WEEYRKLQLIHAKRK------LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                  +   A+ +      L   +      K   V  ++H    V + +L++++  ++
Sbjct: 746 LTRLGDAEKEIARLRGGQVLALAPTIAAKPVDKF-GVRVVTHDAGPVSADDLRTLVLDVR 804

Query: 818 KKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            ++      ++ + G++K++   V+    E       A +L R +AK LGGGGG G+  +
Sbjct: 805 SRLGEERPSVVAVAGVAKDRPVVVVATNAEARRWGVKAGELVRTAAKTLGGGGG-GKDDL 863

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ GG + +K   A+ G+  F+
Sbjct: 864 AQGGGQDPSKVPAALQGIEDFV 885


>gi|86142096|ref|ZP_01060620.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85831659|gb|EAQ50115.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 849

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/896 (36%), Positives = 485/896 (54%), Gaps = 70/896 (7%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           + S+ ++  NDPTLMFTN+GM  FK  F G   P    VT  QKC+R  GKHNDL+ VG+
Sbjct: 1   MASAPMVIKNDPTLMFTNAGMNQFKEFFLGNGTPKDTRVTDTQKCLRVSGKHNDLEEVGK 60

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE-------- 134
              HHT FEMLGN+SFG YFK+ AI  AW+LLT+ + +D+ +LY+T+++ D+        
Sbjct: 61  DTYHHTMFEMLGNWSFGDYFKQDAIDWAWELLTEVYKIDKNKLYVTIFEGDDSEGLERDA 120

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPG---S 190
           EA+ +WKK   ++ D+I+     DNFW M + GPCGPCSEI  D + E      PG    
Sbjct: 121 EAYDMWKK--HVAEDRILNGNKKDNFWEMGDQGPCGPCSEIHVDLRSEEEKAKTPGAELV 178

Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250
           + +  + +EIWNLVF+QF ++       LP   IDTGMG ER+  VLQ+KT+NYD D+F 
Sbjct: 179 NADHPQVVEIWNLVFIQFNRKADGSLENLPARHIDTGMGFERLCMVLQDKTSNYDTDVFT 238

Query: 251 HLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
            LI+  E +   KY       +  RVI DH+R+ +F IADG LP+N G GYV+RRI+RRA
Sbjct: 239 PLIREIETIAHSKYGQSEETDIAIRVIADHVRAVAFSIADGQLPSNTGAGYVIRRILRRA 298

Query: 309 MCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           + Y    L   EP +  L+  L  EM  A+PEL + + LI   ++ E++ F +TLD+GLV
Sbjct: 299 VRYGFTFLNTKEPFIYKLVSVLVDEMSKAFPELKKQQNLIFNVIKEEEQSFLRTLDQGLV 358

Query: 368 LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           LLD +++     E+ +G  AF+LYDT+G P+D+   IL  +G   +D  +F   L++Q+ 
Sbjct: 359 LLDSIIAETKGKEV-SGAKAFELYDTYGFPIDLTALILSEKGYT-LDEKAFQTELQKQKD 416

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           R+RA       G  E   +++ E+    +F+GYD L+    +   RK+  +K        
Sbjct: 417 RSRAA------GKIEAGDWTIVEEDSEEEFVGYDTLQTPVRITRYRKINTKK-------- 462

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
                               G + ++VF+ TPFYAE GGQ+GD G        +      
Sbjct: 463 -------------------EGDQYQLVFNLTPFYAEGGGQVGDKGYLEAANGDVVYITDT 503

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           KK   + +H +  +        +    +D + R +   NHSATHLLH AL  +LG+HV Q
Sbjct: 504 KKENNLIIHLS--KNLPKNLNETFTAVVDAKQRHRTQANHSATHLLHQALRAVLGTHVEQ 561

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAA 666
            GS +    LRFD +H   +T+ ELK IE  VN  I + LP+  +  +  + AIA GA A
Sbjct: 562 KGSMVHSGYLRFDFSHFSKVTAEELKDIEQFVNARIQEQLPLEEQRAIPYDQAIAEGAIA 621

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L G KY D VR +          S  LCGGTH  +T +I    I SES++ +GIRRIEAI
Sbjct: 622 LFGEKYGDAVRTIRFGK------SMELCGGTHAENTADIWYFKIKSESAVASGIRRIEAI 675

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVE 784
           TG     +   QDE+L+++ S L  +       +E +  E  +L  QL     +   NV+
Sbjct: 676 TGDAVMQYFEEQDEQLEAVRSLLN-NAKEPAKSIESLQSENNELKKQLEVLLAEKAKNVK 734

Query: 785 DLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                +I +VN +  +  EV  D+  +K +   L  ++   + +L+   +  KA +   +
Sbjct: 735 GELKTEIQEVNGVQFLAKEVDLDANGIKDLAFQLGGEV-DDLFLLLASRQGGKALLSCYI 793

Query: 843 TEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++L      NA  + R   K + GGGG G+P  A +GG N +   QA+  V ++L
Sbjct: 794 DKELAKAKDLNAGTIVRELGKFIQGGGG-GQPFFATAGGKNPDGIAQALNEVKTYL 848


>gi|78187794|ref|YP_375837.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273]
 gi|123582508|sp|Q3B1I7|SYA_PELLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|78167696|gb|ABB24794.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273]
          Length = 887

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/921 (35%), Positives = 491/921 (53%), Gaps = 83/921 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR +FL+FF    H ++ S+ +IP +DPTL+FTN+GM  FK++F  +    Y   
Sbjct: 1   MHSREIRQSFLDFFAAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RA GKHNDL++VGR   HHTFFEMLGN+SFG Y+KE AI  AW+LLT+ + L 
Sbjct: 61  ADTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTEVWKLP 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY TVY +D+E+ ++W + + +    I+R    DNFW M ETGPCGPCSEI  D   
Sbjct: 121 ADRLYATVYHDDDESARIWAEKTSIEPSHILRFGDKDNFWEMGETGPCGPCSEIHIDLTP 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
               G    +    R IE+WNLVF+Q+++Q       LP+  +DTGMG ER+  V+Q K 
Sbjct: 181 D-GSGKELVNAGDHRAIELWNLVFIQYDRQPDGRLEPLPQRHVDTGMGFERVCAVMQSKA 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
           +NYD D+F  L Q   ++TG+ Y    +G   +  RVI DH R+ +F ++DG +P+NEGR
Sbjct: 240 SNYDTDVFLPLFQRLSELTGVTYGASMDGRQDIAMRVIADHARTLTFALSDGAMPSNEGR 299

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRRI+RRA+ Y+R LG + P++  L+  L   MG  + EL   +  +E  +R+E+E 
Sbjct: 300 GYVLRRILRRALRYSRDLGCSGPILHQLVGTLADSMGDVFGELRDRRDAVERIIRAEEES 359

Query: 358 FGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TLDRG+ +   +   +      +L G+ AFKLYDT+G P D+ + +    GL  +D 
Sbjct: 360 FITTLDRGMEIFGELAAATARAGGRMLKGEDAFKLYDTYGFPFDLTRLLATEAGL-DVDG 418

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   ++EQ+SRAR+              +       AT F+GYD L            
Sbjct: 419 EGFEHCMQEQKSRARSDRREKQQTGDGAGSWQWFSDSHATTFLGYDRLAMP--------- 469

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                        S+I+ A          A +   + +V  +TPFYAE+GGQ GD G   
Sbjct: 470 -------------STIIGA----------AHASGHLLLVLAETPFYAESGGQTGDRGWLE 506

Query: 536 GDGIRLQITDVQKKAEGIFVHHA----------IVERGILRTEMS--LVLTIDYQNRRQL 583
               R+Q+TD +K  +  FVH             ++   +  E +  +  +++   R++ 
Sbjct: 507 SAAYRMQVTDTRKDGD-SFVHVVSRAFDKVRDTEIDPMDIVIEEATPVDASVERILRQET 565

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  ILGSHV Q GS +T + LRFD +H   +T  E++++E  VN+ I
Sbjct: 566 ERNHTATHLLHAALRRILGSHVQQKGSFVTSERLRFDFSHFSKMTPEEIQAVEAEVNEHI 625

Query: 644 AQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                V     +  ++AIA GA A  G KY +RVR+V V        S+ LCGGTHV + 
Sbjct: 626 RCAAHVSKHADLPYDEAIAKGALAFFGDKYAERVRMVEVPG-----ISAELCGGTHVDNI 680

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE 761
           G+I +  I+SESS  AGIRRIEA+TG+ A   L  +  +L+ +   LK+     V  ++ 
Sbjct: 681 GQIGIFKIISESSAAAGIRRIEALTGRAAEMLLWKEYHELQDVRQQLKLKADEAVAEKLA 740

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
           E+ EE ++L+   A  K    ++ L     S  +I     ++ ++  VD+  L+S   AL
Sbjct: 741 ELQEEKKELEKELAGLKSASVIDALVRDATSAEEIGGCRIVTKVLEGVDADTLRSAAMAL 800

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARL-------SAKVLGGGG 867
           ++K+     +L  I+ + K S+    ++  +     +A  L RL                
Sbjct: 801 REKLPVSAGLLCSIA-DGKVSLAAFSSDVAVKEKGIDAGKLIRLAAAAVKGGGGGRA--- 856

Query: 868 GGGRPHMAQSGGPNGNKADQA 888
                 +A +GG N +   +A
Sbjct: 857 -----ELATAGGKNPDGVAEA 872


>gi|57524852|ref|NP_001005836.1| alanyl-tRNA synthetase, cytoplasmic [Gallus gallus]
 gi|53131091|emb|CAG31790.1| hypothetical protein RCJMB04_11d4 [Gallus gallus]
          Length = 913

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/915 (33%), Positives = 463/915 (50%), Gaps = 90/915 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASQIRQRFIDFFKENQHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A +LA DLLTKE
Sbjct: 66  LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  +E        E  ++W  + GL+  +I+     DNFW M +TGPC
Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGD-RDASHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   L   +     L+  +   +G A+PE
Sbjct: 304 TITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+++F KTL RG  +LD  +  +G  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + +   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMEGF----EEERKNAQLKSQGKGAGGEDLLMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K                 + + VKAI ++ + VEE  +GQ+  +V D+T 
Sbjct: 476 RGLEVTDDSPKYG--YTSDPSGTYDFGSLVATVKAIRREKKFVEEVSTGQECGIVLDRTC 533

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  + D           + +VQ +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDQGYMVKDDDSKEDKTEFTVKNVQVR-GGYVLHIGTL-YGSLKVGDQVHL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ E+K
Sbjct: 592 SIDETRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGALSTQEIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
            +E   N +I +  PV  R      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KVEGIANQMIEEAKPVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLADP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  AR  L   +  
Sbjct: 711 SGPAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALRKVESL 770

Query: 742 LKSLASF---LKV---SQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            K L++    +KV      +V   + ++ E        +++K +L  A + L+  ++DL 
Sbjct: 771 KKVLSALDAKVKVQTAPNKDVQKEITDLSEMLATAVIPQWQKDELREAVKALKKVMDDLD 830

Query: 788 CHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
               AD+                     +  + +   +K L   +   +        ML 
Sbjct: 831 RASKADIQKRVLEKTKQVIESHPNQPLVIMEMENGASAKALNESLKLFKTHSPQTATMLF 890

Query: 829 GISKE-KKASVLIVV 842
            +  E  + + L  V
Sbjct: 891 AVDNEAGRITCLCQV 905


>gi|315604258|ref|ZP_07879324.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313964|gb|EFU62015.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 901

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/933 (33%), Positives = 491/933 (52%), Gaps = 71/933 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT +L++F   GH + PS SLI   +P+++FT +GMVPF     G E   +   
Sbjct: 1   MRTSEIRTRWLDYFASKGHHVAPSVSLISP-EPSILFTVAGMVPFIPYILGTESAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDYAWELLTTPQARG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T++++DE +F  W K  G+  +++ R+   +  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEKDEVSFNHWTKTIGVDPERVQRLPFEEISWSTGQPGPAGACCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGL 230
           +D+G    P G P     G+R++EIWNLVF +F +   + R       L K +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPIVDVAGDRFLEIWNLVFDEFVRGEGEGRDFELVGTLDKTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+++++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIEAAQEMSGKTYGLGAAGPNAGGAYDDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  +  +  LL A    M  +YPE
Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVEDAALPTLLTASKNVMSLSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGL 396
           L      I++   +E++ F +TL  G  +LD  ++   +     +++G  AF L+DT+G 
Sbjct: 356 LDSNWETIQDVAYAEEDAFRRTLSAGTTILDAAVASAKETTGAPVISGASAFSLHDTYGF 415

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGA 454
           P+D+  ++   +G+A +D   F   + EQ+ RARA +    +G T+   F   EK   G 
Sbjct: 416 PIDLTLEMAAEQGVA-VDEEGFRSLMAEQKERARADARSKKTGHTDVRVFHEIEKQMGGG 474

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           + F+GY                             + V+A++  G     A +  +VEV+
Sbjct: 475 STFLGY-----------------------TEEAADATVQALLVDGASAPAASAPAEVEVI 511

Query: 515 FDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +        
Sbjct: 512 LDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGTMSVGEKAYA 571

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   R  ++  H+ATH+++  L +++    +Q GS  +P  LRFD  HS  + +++L 
Sbjct: 572 QIDGARRLAIARAHTATHMVYAGLRSVVSKDATQAGSENSPSRLRFDFRHSSAVDASQLG 631

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN+ +A++L V T  M+ ++A A GA AL G KY  RVRVV++    G      L
Sbjct: 632 DIEALVNEKLAEDLTVTTEEMSLDEAKAQGAIALFGEKYGSRVRVVTI----GDGFDREL 687

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV +TG I  + ++ E SI +G+RRI+A+ G  A      +   +  L+  +    
Sbjct: 688 CGGTHVPTTGHIGRITLLGEGSIGSGVRRIDALVGDGAYEFQAKEHALVAQLSHLVGGRA 747

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEV-DSK 807
             +  R+E +  + R  +    K + +  +        S   +  VN +  ++  +  + 
Sbjct: 748 EELPERIENLLAKLRDSEKELEKVRTEQALSRGSELAASARAVGAVNLVGAVVGAMPSAD 807

Query: 808 ELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
            L+++   ++ ++ +  G ++ +G     K S+++   E   +    A  L R   K +G
Sbjct: 808 ALRTLALDVRDRLGNERGAVVALGGIVAGKPSLVVATNEAAREHSIKAGALVRAVGKHMG 867

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGGG GR  +AQ GG      + AI  +   ++
Sbjct: 868 GGGG-GRDDVAQGGGTKPEGLEAAIDAIRREIE 899


>gi|319760313|ref|YP_004124251.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039027|gb|ADV33577.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF]
          Length = 884

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/916 (36%), Positives = 505/916 (55%), Gaps = 57/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            ++  +R  FL FF K  H+++ SSSLIP ND TL+FTNSGM  FKNIF G EK +++ V
Sbjct: 3   KSIVDVRQEFLNFFHKKEHQIISSSSLIPENDQTLLFTNSGMNQFKNIFLGIEKVLFKRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T Q+C+RAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW+LLT    F 
Sbjct: 63  VTAQRCMRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKDSAIEFAWELLTDSNWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + +++IT +  D E++ +W K  G+S  ++I+I +        DNFW M   GPCGPC
Sbjct: 123 LSKDKIWITTHICDNESYDIWTKHIGISKKRVIKIGSKNGHYSDSDNFWKMGNIGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           SEIF+D G+  PG  P +      ERY+EIWNLVFMQF Q++      LP +S+DTGMGL
Sbjct: 183 SEIFYDLGDKFPGVPPNNDMTASSERYVEIWNLVFMQFNQRSNGNLESLPMLSVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+  +LQ   +NY ID+FK+LI +  +V  +K    +  +  VI DH+R+ +FLI DGI
Sbjct: 243 ERITAILQGMCSNYLIDVFKNLIISISEVMNVKKSIAD-RSLYVIADHIRACAFLIKDGI 301

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P NEGRGYVLRRI+RRA+C+ R LG        L+  L + M      L     LIE+ 
Sbjct: 302 IPDNEGRGYVLRRIIRRAVCHGRKLGVNGIFFYKLVTPLISSMSYITEILCDQVDLIEKI 361

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           L +E++ F  TL++GL LL   L  L  ++IL+G VAF+LY T+G PLD+ QDI     +
Sbjct: 362 LFNEEKLFENTLNKGLKLLRKSLIELKNNKILSGRVAFQLYSTYGFPLDLTQDICHEYNI 421

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             ID + F+Q + +++ +++  +          I   +     ++ F+GY          
Sbjct: 422 K-IDQLEFDQIMLKEKKQSKQLNRFCRVSGDITIPIDI-----SSIFVGYK--------- 466

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                              + + A+ Q  E V+   S  +  V+ D TPFY E+GGQ+GD
Sbjct: 467 --------------HVTYRAKIIALFQNNEAVKIVKSNTESMVILDFTPFYGESGGQIGD 512

Query: 531 TGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
            G    + G   ++ +  KK   I V   I++ G +     +   ++   R+ + +NHSA
Sbjct: 513 CGYLRAESGGVFEVRNT-KKYGNITVQIGILKSGKINVGEEVFAQVNPLKRKLICLNHSA 571

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH AL  ILGSHV+Q GS I    LRFD +H   +T  ++ S+E+ +N  I  N  +
Sbjct: 572 THLLHAALLEILGSHVTQKGSLINDRCLRFDFSHYDAMTEKQINSVENFINQQIWSNWVI 631

Query: 650 VTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              +M  E A  +    +L  K YN  VRVV +     G  SS LC GTH  +TG+I L 
Sbjct: 632 TEDLMPIESAYNNTDIIMLSKKQYNQEVRVVRI-----GNFSSELCTGTHSKNTGKIGLF 686

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IV E  I AGIRRIEA T   A S +  +   ++++   +     +++ ++  +     
Sbjct: 687 VIVKELGIGAGIRRIEATTKDLALSIIQRKRTLIQNIIQIMHTDDDHLLNKIHALKLFSN 746

Query: 769 KLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           KL+      K +   + +       + I +V  +   I  ++ + +  ++  +++ ++SG
Sbjct: 747 KLEKEIRVLKNKQETQKILSSAHEVYYIKNVPILVKQIENIELETVFYMVGCIKRHLKSG 806

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           +I+L+         +++ VTEDL++R   N++D+       + GG GGG+   AQ+   N
Sbjct: 807 LIVLINTRINNSIHLIVSVTEDLIERNHINSLDVVHYIMHNV-GGKGGGKSDFAQAKIDN 865

Query: 882 GNKADQAIAGVASFLK 897
                + +A V   L+
Sbjct: 866 VINKSEFVANVKLLLR 881


>gi|242012157|ref|XP_002426803.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510999|gb|EEB14065.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 983

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/967 (31%), Positives = 482/967 (49%), Gaps = 87/967 (8%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           +   +R TF++FF +K  H+ + SSS IP +DPTL+F N+GM  FK IF G   P     
Sbjct: 5   SSKEVRQTFIDFFIKKKQHQYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMA 64

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT 
Sbjct: 65  KWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTT 124

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY+T +        + D E  K+W  + G+    ++     DNFW M ETGP
Sbjct: 125 VYHISPDRLYVTYFGGDSASGLEPDSECKKIWIDL-GVPESHVLPGNMKDNFWEMGETGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           +++    +EIWNLVF+QF ++       LPK  ID GM
Sbjct: 184 CGPCSELHYDRIGNRNASH-LVNQDDPDVLEIWNLVFIQFNRETDGSLKTLPKRHIDCGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +V+Q K +NYD D+F  L  A ++ TG                 + +RV+ DH 
Sbjct: 243 GFERLVSVIQNKRSNYDTDIFTPLFDAIQKGTGSPPYKGKVGAEDVDGIDMAYRVLADHA 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  +ADG  P N GRGYVLRRI+RRA+ Y    L         L+  +C  +G  + 
Sbjct: 303 RTLTIALADGGRPDNVGRGYVLRRILRRAIRYGTEKLNTKPKFFSSLVKTVCDTLGDTFS 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +    I E +  E+E+F KTL RG  LL+  ++ +GK ++L GDVA++LYDT+G P+
Sbjct: 363 EIRRDPDTIMEIINEEEEQFLKTLSRGRNLLNRTIAKIGKSKVLPGDVAWRLYDTYGFPV 422

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL+ +D+  + +A    R +A+  S G      + I   +   +  T+  
Sbjct: 423 DLTQLMAEEKGLS-VDMTGYEEA----RKQAQLLSQGKEGKVDDGIALDV---HAITELQ 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDL-TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +       K + K   Q    +       + + AI  + + V+   SG+K  ++ D+
Sbjct: 475 NLKIPPTDDSPKYNYKAKQQDKNAEYEFQKCEAKITAIRHKKKFVDSINSGEKCGILLDR 534

Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           T FYAE GGQ+ D G  I    + +   I +VQ KA G  +H    E G+ +   ++VL 
Sbjct: 535 TLFYAEQGGQIFDEGYMIKKNDENVEFSIYNVQVKA-GYVLHFGTTE-GVFKKGDTVVLH 592

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   RR +  NH+ TH+L+ AL  +LGS   Q GS + PD LRFD T+   +T  ++K+
Sbjct: 593 LDTARRRLVMNNHTGTHILNFALREVLGSGCEQKGSLVAPDRLRFDFTNKSAMTPDQIKA 652

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
            ED+V  +IA+N  V  +      A   +G  A+    Y D VR+VSV      + ++  
Sbjct: 653 AEDSVKRVIAKNCEVFAKNTPLAVAKTVNGVRAMFDEHYPDPVRIVSVGAAVEDLVANPS 712

Query: 692 ---------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QD 739
                      CGGTH+  +G +    I SE +I  GIRRI A+TG  A   L      +
Sbjct: 713 SSLGMSVPAEFCGGTHLHRSGHVGDFVISSEEAIAKGIRRIVALTGPEASKALKKAAILE 772

Query: 740 EKLKSLASFLKVSQGN--VVGRVEEIWEE--------YRKLQLIHAKRKLQLNVED---- 785
            ++  +   +  S     +  ++  + ++        ++K +L +A + L+  ++D    
Sbjct: 773 NEVNEIKQKMNDSSAQKMIPKKIISLTDDISHAVIPYWKKEELRNALKVLKKQLDDKERA 832

Query: 786 ----------LSCHKIADVNFMS-HIISEV----DSKELKSVMDALQKKIQSGIIMLVGI 830
                         KI + N     I++EV    ++K + + +  ++    +   M   +
Sbjct: 833 NKAALAAGVVEQAKKIIEANLNKPFIVAEVKAFSNNKAVDTALKQVKALSPNTAAMFFSV 892

Query: 831 SKE-KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +  K   L  V +       +A D     + +L  G GGG+   AQ  G N +  ++A
Sbjct: 893 DPDANKIFYLASVPKSANSQGLSAGDWVNHVSPLLK-GKGGGKAESAQGSGSNFSALNEA 951

Query: 889 IAGVASF 895
           +     F
Sbjct: 952 MDAARKF 958


>gi|50310341|ref|XP_455190.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644326|emb|CAG97897.1| KLLA0F02431p [Kluyveromyces lactis]
          Length = 956

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/966 (32%), Positives = 485/966 (50%), Gaps = 93/966 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R+TFL++F+  GH  +PSS +IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TAANVRSTFLDYFKSKGHTFVPSSPVIPFDDPTLLFANAGMNQYKPIFLGTVDPSSDFYK 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK 
Sbjct: 70  LKRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++ DE        EA  LWK + G+  D I+     DNFW M E GPC
Sbjct: 130 YGIPGDRLYVTYFEGDEKLGLEPDFEARDLWKSV-GVKDDHILPGNAKDNFWEMGEQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +++    +EIWN VF+QF ++  +    LP   +DTGMG
Sbjct: 189 GPCSEVHYDRIGGRNAAH-LVNQDDPDVLEIWNNVFIQFNREQDRSLRALPAKHVDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VL +  +NYD D+F+ L    +++TG++                 +RV+ DH+R
Sbjct: 248 FERLVSVLHDVRSNYDTDVFEPLFNRIQEITGVRSYTGKFGAEDTDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L   L  ++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSQLSVTLIEQVKDMFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +          D+ L+G   ++LYDT+G 
Sbjct: 368 EVARDPSYLFEILDEEEASFAKTLDRGEKLFEKYAEDALKKADKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID I F +A +E    ++    G   G ++ I  ++ E      
Sbjct: 428 PVDLTELMAEEQGLK-IDTIGFEKAKQESYEASK---KGGKKGASDLIRLNVHEL----- 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L G    K D            T  V + +  I    + V+     G++  V+ 
Sbjct: 479 ----SQLNGDNVAKTDDSSKY------GTENVEATILRIYDGEKFVDSMTEIGKQYGVIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG  + DG     + +VQ    G   H   +  G L    S++ +
Sbjct: 529 DKTCFYAEQGGQEFDTGKLVIDGEAEFNVDNVQ-AYNGYVFHTGSLGDGKLSIGDSIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            +   R  L  NH+ TH+L+ AL  +LG+ V Q GS + P+ LRFD +H + ++  EL  
Sbjct: 588 YEELRRHPLRNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKRALSYEELVE 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +E   N+ I  NL V  + +  + A   S   A+ G  Y D VRVVS+            
Sbjct: 648 VEKLSNEKIRDNLTVYYKEVALDLAKTISSVRAVFGETYPDPVRVVSIGKAVEEVLENPT 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
            E+   +S   CGGTHV+ T +I    IV ES I  GIRRI A++G  A           
Sbjct: 708 SEEWQKYSIEFCGGTHVAKTSDIKEFVIVEESGIAKGIRRIVAVSGPEAYEVQRIATEFD 767

Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         + +KLK L   L       +++ ++  +  +I +E +      AK+
Sbjct: 768 GELTAVEKLPFSPLKAQKLKELGVRLGQLTISVITKTDLKDKFNKIEKEVKDELKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-E 833
           +++  ++D+  H  A+     ++ HI    ++K +   ++ ++   +   I L   ++ +
Sbjct: 828 EIKQTLDDVKHHFDANKESSFYVKHIDIPTNAKAITEAINHIKTNSKDKSIYLFTCNEPD 887

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +    +++  +    +   LA+  +  + GG  GG+ ++ Q  G   N  D A+A V
Sbjct: 888 GKVAHGCYISDAAIAQGVDGSSLAKTVSSSI-GGKAGGKGNVFQGMGDKPNGIDSAVAEV 946

Query: 893 ASFLKK 898
            + LK+
Sbjct: 947 EALLKE 952


>gi|294932634|ref|XP_002780365.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC
           50983]
 gi|239890298|gb|EER12160.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC
           50983]
          Length = 982

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/975 (32%), Positives = 477/975 (48%), Gaps = 96/975 (9%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKP 56
           +S+ S +R TF+ FF +K G   L SS ++P NDPTL+F N+GM  FK IF GQ   + P
Sbjct: 24  LSDPSVVRDTFINFFVEKKGATFLKSSPVVPHNDPTLLFINAGMNQFKPIFLGQLDKDHP 83

Query: 57  VY--QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
            Y  +  T  QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG +FK   I  AW+LL
Sbjct: 84  FYGVKRATNTQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGNWSFGDFFKAEQIPWAWELL 143

Query: 115 TKEFDLDQRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           T+ F LD  RLY T Y           D+EA  LW K   L  D +I     +NFW M +
Sbjct: 144 TEVFGLDPARLYATYYGGDPKEPEVPADDEARDLWLKF--LPPDHVIPFGMKENFWEMGD 201

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPCSEI +D            + +    IEIWNLVFMQ+ ++N      LP   +D
Sbjct: 202 TGPCGPCSEIHYDNVGG-RDASALVNMDDPTVIEIWNLVFMQYNRENDGSLTRLPHPCVD 260

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQAS-EQVTGMKYE-----GNNIVNHRVIVDHL 279
           TGMG ER+   L  KT+NYD D+FK +  A  EQ+ G++        N  V +RV+ DH+
Sbjct: 261 TGMGFERICAALTGKTSNYDTDVFKPIFAAIQEQIPGLRSYTGELTDNIDVGYRVVADHI 320

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG +P+NEGRGYVLRRI+RRA+ Y    L         L+PA+   +G A+P
Sbjct: 321 RTLTVALSDGAVPSNEGRGYVLRRILRRAVRYGTEKLNAPAGFFNKLVPAVVESLGEAFP 380

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E++  +  ++  +  E+E+F +TL+RG+   +   S   + ++L+G  AF+L+ T G P 
Sbjct: 381 EIVANQADVQALIADEEEQFARTLERGIREFNSRASKT-EGKVLSGRDAFELFTTFGFPC 439

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   RG+  +D+ SF +  E  R +++  +        +                
Sbjct: 440 DLTQVMAQERGMT-VDVQSFEEEFEAFRQKSKESNNFTMGSNLQLFADQ----------T 488

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-----VEEAVSGQKVEV 513
            Y          ++                SS + AI    +      V+   + + + +
Sbjct: 489 NYLENELKVPKTDETCKYAWDSAKGEGGQWSSQLCAIWDGKKWLDTIDVKSGYAQKTIGL 548

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGI---LRTE 568
           V   TPFYAE GGQ+ D G  +    G R  + + QK  +   +H   ++  +   L+  
Sbjct: 549 VLSVTPFYAEQGGQIFDVGTIVDPLTGARFDVKNTQKFGQ-YVLHIGSMDSAVDAALKVG 607

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  ++DYQ R  ++ NH+ATH+L+ AL  +LG    Q GS + P  LRFD   +KPIT
Sbjct: 608 SEVRASVDYQRRALIAKNHTATHILNFALRQVLGDKCDQRGSLVDPSRLRFDFAQNKPIT 667

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------ 681
           + +LK IE   N  I ++L V    +    A    G  A+ G  Y D VRVVSV      
Sbjct: 668 NEQLKEIEQICNQQIQKHLNVFANDVQLAKAKDIRGLRAVFGETYPDPVRVVSVGEAIDT 727

Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHL 735
                E + G   S   CGGTHV ++ EI    I +E  I  GIRRI A TG Q A    
Sbjct: 728 LLKETEVDFGHEFSIEFCGGTHVGNSQEIFKFVITAEEGIAKGIRRIVAATGPQAAVEAS 787

Query: 736 MGQDEKLKSLASFLKVSQGNVVG-RVEEI---WEEYRKLQLIHAKRKL------------ 779
           +   + ++ L S  K  +G V+   + ++     E +++ L   K  L            
Sbjct: 788 IKTTDLMEELNSA-KALKGEVLDHAIAQLRNKLNEEKEVSLTAKKDMLCLLDDLKTQQIK 846

Query: 780 ------------QLNVEDLSCHKIA--DVNFMSHIISEV--DSKELKSVMDALQKKIQSG 823
                          + +     I   +  F+     E+  D+K +++ +D++ KK+   
Sbjct: 847 EEKKKAKEVQKQAAKIGEQLAESIGASEGKFLITQCDELLADAKAMQNAVDSIAKKLPEL 906

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            + +V  S   K +VLI V + +  + +A +          GG GGG P  AQ      +
Sbjct: 907 PVCIVSASS-SKLAVLITVPKSMSKKVSAKEWLN-VCLETCGGKGGGSPMKAQGQSQEPS 964

Query: 884 KADQAIAGVASFLKK 898
           K  + I     + +K
Sbjct: 965 KVAETIEVSKQWAEK 979


>gi|146321099|ref|YP_001200810.1| alanyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|145691905|gb|ABP92410.1| Alanyl-tRNA synthetase [Streptococcus suis 98HAH33]
          Length = 830

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/857 (35%), Positives = 463/857 (54%), Gaps = 65/857 (7%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIGA-GPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G        G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RG+  +DI  F  A++EQ+ RARA  +  GS   +                       
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQN---------------------- 449

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
               +    +  +   +     + + +  IV      E    GQ   +VFDQTPFYAE G
Sbjct: 450 ----ETLAAITEESTFVYGQTALEASLSVIVADNARTEAVSEGQ-ALLVFDQTPFYAEMG 504

Query: 526 GQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GQ+ D G        I   + DVQK   G  +H   +    +    +  L I+ + R+ +
Sbjct: 505 GQVADHGFVKNATGDIVATVIDVQKAPNGQPLHTVEL-SASISVGQTYTLEIETKRRKGV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  I+G H +Q GS    D LRFD TH + +T+ EL+ IE+ VN+ I
Sbjct: 564 EKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEVNEQI 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              +PVVT   + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T 
Sbjct: 624 WNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHVGNTA 678

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762
           EI +  I+ E  I +G RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE 
Sbjct: 679 EIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVES 738

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           + ++ R LQ  +A  K +            + D N + +I S+V   D+  L++  D  +
Sbjct: 739 LAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFADNWK 798

Query: 818 KKIQSGIIMLVGISKEK 834
           +K  S +++LV    +K
Sbjct: 799 QKDYSDVLVLVAAIGDK 815


>gi|320103497|ref|YP_004179088.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
 gi|319750779|gb|ADV62539.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644]
          Length = 874

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/917 (35%), Positives = 480/917 (52%), Gaps = 69/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R ++L+FF   G  L PS  L+P +DPT++FT +GM  FK  F G   P ++  
Sbjct: 1   MTTDELRQSYLDFFVSKGCVLKPSDVLVPRDDPTVLFTPAGMNQFKREFMGLGDPTFKKA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKC+R G    D+DNVGRT  H TFFEMLGNFSFG YFK  AI  AW+ LTK   +D
Sbjct: 61  VTCQKCLRTG----DIDNVGRTAFHETFFEMLGNFSFGDYFKREAIHWAWEYLTKILKID 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIF 176
             RL +TVY +D+EAF +W    GL + +I R+   DNFW     S+   G CGPCSEIF
Sbjct: 117 PDRLSVTVYLDDDEAFAIWNNEIGLPSSRITRMDEADNFWPASAPSLGPNGVCGPCSEIF 176

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           F                G + +EIWNLVF QF +   ++   LP  +IDTGMGLER A  
Sbjct: 177 FHGN-------------GPKEVEIWNLVFTQFNRVGFRQLEPLPHKNIDTGMGLERAAAC 223

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294
           LQ     +  DLF+ ++    +V    Y+ +  + V  R + DH R+ +F I + + P+N
Sbjct: 224 LQGVPTVFMTDLFRPIVARVAEVLDQPYQADSPDGVRMRRMADHARALTFCIHENVRPSN 283

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           E +GYVLRR++RRA+     LG  EP +  L P +  +M   YPE++ +   I+  +R E
Sbjct: 284 EKQGYVLRRLLRRAVLDGYHLGRREPFLYQLPPIVAQQMSGPYPEVVGSVPRIQAVIREE 343

Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E F + L+ G+ LL+           ++L+G  AFKL+ THG+P+++++ +   R L  
Sbjct: 344 EEDFLRNLEHGMKLLEDTFRKTKAAGSDVLDGSTAFKLHATHGIPIEVVESLAAERELT- 402

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F  A+EE    +R  S          +    K     T+F+GY+  R        
Sbjct: 403 VDRPGFEAAVEEHARISRGTSEAAAVFEVGPLDELKKAHPQGTRFLGYETTR-------- 454

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ----KVEVVFDQTPFYAEAGGQL 528
                           +  V  ++Q   +V+   +G     +  +V DQ+PFY E+GGQ+
Sbjct: 455 ---------------ATGKVIGLIQGPALVDSVAAGTGDHAQAAIVLDQSPFYGESGGQV 499

Query: 529 GDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           GDTG   G DG    +TD QKK     +H   VE G +    ++   +D + R  +   H
Sbjct: 500 GDTGRLTGPDGFLFLVTDTQKK-NDFLLHLGRVEHGAIVPGATVEAEVDAERREAIRRAH 558

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLHHAL   LG H  Q GS + PD LRFD  + + +    LK+IE  VN+++  + 
Sbjct: 559 SATHLLHHALHKHLGEHAQQAGSKVEPDRLRFDFANPEAVGRDRLKAIEATVNNLVLGDA 618

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P+   IM  + A   GA AL G KY + VRVV++     G +S  LCGGTH+    +I +
Sbjct: 619 PITWTIMPLDQARKLGAMALFGEKYPENVRVVTM-----GDYSRELCGGTHLDHVSQIGV 673

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SE S+ AG RRI A+TG+ A  +L  +D  L+ +A+ LKV       RV  + EE 
Sbjct: 674 FAILSEESVAAGTRRITALTGRAALDYLKERDAVLEEIAATLKVPVAQAPARVAALLEEV 733

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           + L+    +RK    +  +        ++  V  ++ +I     +E++ + D ++KK   
Sbjct: 734 KTLKKQATQRKSAQTLGSIDSFLNEAVEVDGVQLVARVIDGGTVEEMRQLCDVMRKKAGE 793

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
            + +L+G   E K +++   T DL+   + NA    ++ A ++GGGGG G+P MA +GG 
Sbjct: 794 RLAILLGSVVEGKVNLVAAFTPDLVAQRKANAGQWLKILAPIVGGGGG-GKPEMATAGGK 852

Query: 881 NGNKADQAIAGVASFLK 897
             +K  + +      L+
Sbjct: 853 LPDKLPEVVRRAPETLR 869


>gi|218184221|gb|EEC66648.1| hypothetical protein OsI_32912 [Oryza sativa Indica Group]
          Length = 953

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/962 (32%), Positives = 461/962 (47%), Gaps = 93/962 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P       
Sbjct: 9   ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ +
Sbjct: 69  RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 128

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPCG
Sbjct: 129 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG 
Sbjct: 187 PCTEIHFDRV-GNRDAASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVT-----------GMKYEGNNIVNHRVIVDHL 279
           ER+ ++LQ K +NYD D+F  +  A  Q+            G +      + +RV+ DH+
Sbjct: 246 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 305

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ SF IADG  P NEGR YVLRRI+RRA+ +    L   +     L+      MG  +P
Sbjct: 306 RTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL   +  I++ ++ E+E F  TL +G          + +    +L+G  AF L+DT+G 
Sbjct: 366 ELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGTVLSGQDAFVLWDTYGY 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL+ +D   F+ A+EE R +AR      G         S+     AT 
Sbjct: 426 PVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANATA 477

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                 LR       D          D      S+VKAI    E V  A   +   +V +
Sbjct: 478 -----QLRNQGLASTDDSPKYGYKDND------SVVKAIYTGSEYVSAASGDEDFGLVLE 526

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLT 574
            T FYAE GGQ+ DTG   G      +T+VQ    G  +H     +G   L     +   
Sbjct: 527 STSFYAEQGGQIYDTGKIEGSFGSFNVTNVQ-VFAGYVLHMGSFTKGSKALSVGDKVACK 585

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   +L+ 
Sbjct: 586 VDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRK 645

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------E 682
           IE  VN  I   L V  R +   DA   +G  A+ G  Y D VRVVSV           E
Sbjct: 646 IESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPE 705

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI A+T + A   +       
Sbjct: 706 SKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSID 765

Query: 738 -------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IH 774
                         ++ + S+ S L         + ++ GRV ++ +E RK +      +
Sbjct: 766 SEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEEN 825

Query: 775 AKRKLQLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            ++ ++  ++           F ++H+   +D+  ++  +  ++ +    I++       
Sbjct: 826 IQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVIKVKDQKDLPIMLFSTDEAT 885

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA +   V     +    +D    S   L G GGGG+  +AQ  G   ++  +A+    
Sbjct: 886 NKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVAT 945

Query: 894 SF 895
             
Sbjct: 946 QI 947


>gi|320581101|gb|EFW95323.1| Cytoplasmic alanyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 954

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/967 (31%), Positives = 477/967 (49%), Gaps = 95/967 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R TFL++F+  GH  + SSS+IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 6   TATKVRNTFLDYFKDRGHTFVSSSSVIPHDDPTLLFANAGMNQYKPIFLGTVDPSSSFAS 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +WDLLT  
Sbjct: 66  LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTNV 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L++ RLY+T ++ D         EA + WK + G++ D I+     DNFW M + GPC
Sbjct: 126 YGLNKDRLYVTYFEGDAANGLEPDLEAKQYWKDV-GVADDHILPGNAKDNFWEMGDQGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+QF ++       LP   +DTGMG
Sbjct: 185 GPCSEIHYDRIGG-RNAASLVNQDDPDVLEIWNNVFIQFNREQDGSLKPLPAKHVDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ   +NYD D+F+ L    +++TG++                 +RV+ DH+R
Sbjct: 244 FERLVSVLQNVRSNYDTDVFQPLFSKIQEITGVRPYSGKFGKDDLDGIDTAYRVLADHVR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   Y R             L P L  ++   +P
Sbjct: 304 TLTFALADGGVPNNEGRGYVLRRILRRGARYVRKYMNYPIGKFFSQLAPTLIEQVKDIFP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+      I E L  E+  F +TLDRG  L +   +++    ++ L G   ++LYDT+G 
Sbjct: 364 EVATNTDTIFEILDEEEASFARTLDRGEKLFEQYAIIASKTPEQTLAGRDVWRLYDTYGF 423

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A       ++A     G                   
Sbjct: 424 PVDLTRLMAEEAGL-NIDEEGFEKARLASLEASKAGGSKSGK-----------------T 465

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEV 513
            +  D+             +           + + +  I    E++   E   +GQ++ V
Sbjct: 466 LLKLDVHILGALDSNKDIPVTDDSYKYGNQDIKTKIVGIYNGKELLGSTEGTEAGQQLGV 525

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + ++TPFYAE GGQ  DTG  + DG+   ++ +VQ    G  +H   V  G       ++
Sbjct: 526 LLEKTPFYAEQGGQEYDTGKIVIDGVAEFEVENVQ-SYAGYVLHTGHVVEGKFSVGDQVI 584

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  ILG  V Q GS +  + LRFD ++   +T  +L
Sbjct: 585 AGYDELRRWPIRNNHTGTHILNLALREILGDGVDQKGSLVAAEKLRFDFSNKAAVTLEQL 644

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--------- 682
           + IE   N II  ++PV ++ +    A +  G  A+ G  Y D VRVVS+          
Sbjct: 645 EKIEAICNKIIKDSMPVYSKPVALNVAKSIYGLRAVFGETYPDPVRVVSIGVPVEELLAK 704

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------- 733
              ++   +S   CGGTHV+ T +I  L IV ES I  GIRRI A+TG  A         
Sbjct: 705 PDNKEWYDYSVEFCGGTHVAKTSDIKELVIVEESGIAKGIRRIVAVTGTEAHEVQRIAKE 764

Query: 734 ------------HLMGQDEKLKSLASFL---------KVSQGNVVGRVEE-IWEEYRKLQ 771
                           +++KLK  ++ L         K    +   ++++ + +E +  Q
Sbjct: 765 FDEQLDAIEKMPFGEAKEKKLKETSTKLGQLSISVLQKAQLKDKFAKIDKAVKDEVKARQ 824

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
               K+ L   V++           + HI    ++K +   ++ ++K+ +   + L+   
Sbjct: 825 KADTKKALD-AVKEFFAEHEDAPFLVKHIDISANAKIITETINMIKKENKEKSLFLITGQ 883

Query: 832 KEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K+  + +  + ++++ L +  A ++A ++A  + GG  GG+ ++ Q  G    + D+AI+
Sbjct: 884 KDDARVAQGVYISDEHLGKVQATEVANVAASYI-GGKAGGKGNVCQGMGTEAAQIDKAIS 942

Query: 891 GVASFLK 897
            V   L+
Sbjct: 943 AVEKLLE 949


>gi|289615775|emb|CBI57516.1| unnamed protein product [Sordaria macrospora]
          Length = 961

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/967 (33%), Positives = 482/967 (49%), Gaps = 97/967 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQA 60
            +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM  FK IF G     ++    + 
Sbjct: 11  QVRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + L
Sbjct: 71  AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGL 130

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY+T ++           EA  LW ++ G+  D II     DNFW M + GPCGPC
Sbjct: 131 DPQRLYVTYFEGSPDLGLEPDLEAKNLWLEV-GVPEDHIIPGNMKDNFWEMGDQGPCGPC 189

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +E+WN+VF+QF++Q  +    LP   IDTGMG ER
Sbjct: 190 SEIHYDKVGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGFER 249

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
           + + LQ+KT+NY  D+F  L    ++VTG +   +             +RVI DH+R  S
Sbjct: 250 LVSALQDKTSNYATDIFTPLFAKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRLLS 309

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
           F IADG  P N GRGYV+RR++RR   YAR     E       +LPAL  +MG  +PEL+
Sbjct: 310 FAIADGAAPNNVGRGYVVRRVLRRGARYARKYFNAEIGTFFSRILPALVEQMGEQFPELV 369

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399
           + +  I+E L  E+  F  TLDRG    +   +   K   + L+G   ++LYDT G P D
Sbjct: 370 KKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGKKKLSGADVWRLYDTFGFPED 429

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFI 458
           + + +   RGL  ID    N+A    R +AR  S  +     E    ++ +     T   
Sbjct: 430 LTKLMAEERGLT-IDEAEVNEA----REKAREASKAVKESVQEFAKLNVHQIAELETSLN 484

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVF 515
                  +KF+K D K                 V+ I    E ++ +        + ++ 
Sbjct: 485 IPRPTSDAKFLKGDAK---------------GKVQLIFNGKEFLKSSKDLPPKTPLGLLL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D T FYAE+GGQ+ DTG  I DG+   ++ DVQ+   G  VH+  +E G L     +   
Sbjct: 530 DNTNFYAESGGQVADTGRIIIDGVAEFKVLDVQE-FGGYIVHNGFIEYGELTEGDEVTCE 588

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  D LRFD +H   I   ++K 
Sbjct: 589 YDELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDRLRFDFSHKAAIPLEDIKK 648

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE--------- 684
           IED  N  I QNL   ++ ++ + A    G  A+ G  Y + VRVVS+  E         
Sbjct: 649 IEDLSNHYIRQNLKAYSKEVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNPK 708

Query: 685 --DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ------------- 729
             +    S   CGGTHV +TG I  L IV ES I  GIRRI A TG+             
Sbjct: 709 NPEWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQRDAQVFS 768

Query: 730 ------RARSHLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                  A S+   +  ++K+ A  L       +++  +  R  +I +E    Q    K 
Sbjct: 769 DKLEHINALSYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQKA 828

Query: 778 KLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + +  ++ ++ H   D N     F+ H+    ++K +  V+   + K +   + +   SK
Sbjct: 829 ESKTALDTVASHFSKDENKDSKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGSK 888

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + +    + V   L  +   A       + V+ GG  GG+    Q  G    K ++A+  
Sbjct: 889 DDQVMHGVYVGTALSSKGVTAEQWTSAVSAVI-GGKTGGKEPSRQGAGAEPEKLEEAVKK 947

Query: 892 VASFLKK 898
              +L +
Sbjct: 948 AEEWLSE 954


>gi|323173022|gb|EFZ58653.1| alanyl-tRNA synthetase [Escherichia coli LT-68]
          Length = 714

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/741 (43%), Positives = 453/741 (61%), Gaps = 54/741 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFSFG YFK  AIQ AW+LLT  K F L + RL++TVY+ D+EA+++W+K  G+  +
Sbjct: 1   MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60

Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIW 201
           +IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RYIEIW
Sbjct: 61  RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LIQA  +VTG
Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
                N   + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ +  +LG  E  
Sbjct: 181 ATDLSNK--SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MGSA  +L + +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  
Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+   
Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             I         A++F GYD L                        ++  V A+   G+ 
Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V+   +GQ+  VV DQTPFYAE+GGQ+GD G   G      + D QK  + I  H   + 
Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLA 446

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HVSQ GS +    LRFD 
Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H++ +   E++++ED VN  I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+
Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++
Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799
           L  +A  LK    N+  +V  + E  R+L+    + K Q   ++ +    K  DVN +  
Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681

Query: 800 IISE---VDSKELKSVMDALQ 817
           ++SE   V+ K L++++D L+
Sbjct: 682 LVSELSGVEPKMLRTMVDDLK 702


>gi|302681375|ref|XP_003030369.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8]
 gi|300104060|gb|EFI95466.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8]
          Length = 949

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/965 (31%), Positives = 461/965 (47%), Gaps = 95/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
           +   +R  F ++FQ  GH  + SS  +P +DPTL+F N+GM  FK +F G   P      
Sbjct: 8   SSRQVRQDFFDYFQSKGHTFVRSSPTVPYDDPTLLFANAGMNQFKPLFLGTVDPHSDLSK 67

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+ 
Sbjct: 68  LKRAYNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 127

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY++ ++ D         EA + W  I G+  D I+     DNFW M  TGPC
Sbjct: 128 YKLPKDRLYVSYFEGDPKNGLEPDLEAKQYWLDI-GVPEDHILPGNAKDNFWEMGATGPC 186

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+QF +++      LP   +DTGMG
Sbjct: 187 GPCSEIHYDRIGGRNAAH-LVNQDDPDVLEIWNNVFIQFNREDDGSLKPLPSKHVDTGMG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
            ER+ +V+Q+K +NYD D+F  + Q  +++TG++                 +RV+ DH+R
Sbjct: 246 FERLVSVVQDKRSNYDTDVFSPIFQRVQELTGVRPYQGLFGPDDKDGIDTAYRVVADHVR 305

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAYP 338
           + +F ++DG +P N GRGYVLRRI+RR   YAR  LG T       L+P +   MG  +P
Sbjct: 306 TLTFALSDGGVPNNVGRGYVLRRILRRGARYARKKLGVTIGSFFSSLMPVVVEHMGDVFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           E+ +    I+E L  E+E F +TLDRG  L D       +   + LNG   ++LYDT+G 
Sbjct: 366 EITKKLPEIKEILDEEEESFARTLDRGEKLFDQYAKRAKEQNLKELNGKDVWRLYDTYGF 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    GL GI+   F  A    +  ++A      +   +     +        
Sbjct: 426 PVDLTTLMAEELGL-GINEKEFEDAQAWSKEASKATQNKDAATVVKLDVHDIAA------ 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                L +G    K D               +++ VK I      ++            +
Sbjct: 479 -----LEKGGDVAKTDDSSKYN------QGNITATVKKIFHNKAFLDSTSDIPEATSFGI 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE+GGQ  DTG  + DG+   ++TDVQ    G  +H   ++ G L     +V
Sbjct: 528 ILDRTNFYAESGGQENDTGGIVIDGVAEFEVTDVQ-VYNGYVLHVGHLKYGDLEVGNEVV 586

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + D   R  L  NH+ATH+L++ L  +LG H+ Q GS + P  LRFD +H   I   EL
Sbjct: 587 ASYDELRRWPLRNNHTATHILNYCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQIPLPEL 646

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS----------- 680
             IE    D I +N+ V  + M+ + A    G  A+ G  Y D VRVVS           
Sbjct: 647 TQIESMSVDWIKKNVKVYGKDMDLKSAQKIPGLRAVFGETYPDPVRVVSLEFSVDEISAD 706

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E       S   CGGTHV+ TG+I    I  ES I  GIRRI A+TG  A       D 
Sbjct: 707 IENPKWRSTSIEFCGGTHVAKTGDIKHFVITEESGIAKGIRRIVAVTGHEAAEATRLADA 766

Query: 741 KLKSLASFLKVSQGNVVGRVE-----------------EIWEEY----RKLQLIHAKRKL 779
               L    K++       ++                 ++ +      +       +R+ 
Sbjct: 767 LQIKLDQIEKMTGKEADAAIKAFTVTLNQADTSIIRKSQLKDRLASVRKAFDKQVKEREA 826

Query: 780 QLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            LN + L               F+S +  + ++K L++V+   +K  +   + L     E
Sbjct: 827 ALNKDALDQFRTFFEQTPGAPAFVSILHVDGNAKLLQNVVAQARKAGK--AVYLFSPDPE 884

Query: 834 K-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             K + +  V   L ++  +A   A     VL GG  GG+   AQ  G N ++ D A+  
Sbjct: 885 GTKVAHVNFVPPALREKGLDAKTWAAKVTDVL-GGKAGGKEDSAQGVGTNVDRVDDALKA 943

Query: 892 VASFL 896
              ++
Sbjct: 944 AGQYV 948


>gi|301335327|ref|ZP_07223571.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|301336313|ref|ZP_07224515.1| alanyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
          Length = 875

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/907 (37%), Positives = 505/907 (55%), Gaps = 48/907 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + +++R+ FL+F+    H  + SS + P NDP+++FTN+GM  FKNIF G+E+  Y  
Sbjct: 1   MLS-NTLRSNFLKFYANRNHTPVTSSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI  AW++    F+ 
Sbjct: 60  ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNF 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D   +Y TV+++D+EAF LW+K   L  DKI R+T  DNFWSMA+TGPCG CSE+ FD+G
Sbjct: 120 DPDFIYATVHEKDDEAFALWEKY--LPTDKIFRLTDKDNFWSMADTGPCGFCSELLFDRG 177

Query: 181 ECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           E       P    +GER++E WNLVFM+F + +      L K  +DTG GLER+ ++L E
Sbjct: 178 EKFGKAASPLEDVDGERFLEYWNLVFMEFNRASDGTLLALQKKCVDTGAGLERLVSLLAE 237

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
               ++ D+ +HLI   E ++G  Y    +     RVI DH+RS SF IADG+LP N  R
Sbjct: 238 TETVFEADVLRHLIAKVENLSGTTYSPTESKGAAFRVIADHIRSLSFAIADGLLPGNTER 297

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLR+I+RRA+ Y + LG+  P +  ++P+L   MG AYPEL  ++  I+E L +E+E 
Sbjct: 298 GYVLRKILRRAVNYGKRLGFHRPFLAEVVPSLVETMGEAYPELQASETQIQEVLTTEEEH 357

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           F KTL RG  LL  VL        ++G+ AFKL DT+GLP+D +  +        +D+ +
Sbjct: 358 FFKTLQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIALLAKDHDYT-VDMET 416

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F +   E + R+R ++    S  +  I+  L +    ++F+GY +L    F         
Sbjct: 417 FEKLEMEAKERSRKNTAKTTSD-SNSIFLDL-DPTNTSEFVGYHMLSCDTF--------- 465

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537
                         ++ IV+  EI      G++ E++   TPFYAE GGQ+GD+G    +
Sbjct: 466 --------------IEGIVKYNEIATTLEEGEEGEIILRTTPFYAEKGGQIGDSGEIFCE 511

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                ++       G+ VHH  + +G L+T M++   ++   R++++ NH+  HLLH AL
Sbjct: 512 SGTFLVSHTTTPKAGLIVHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKAL 571

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
              LG H+ Q GS +    +R D TH+K ++  +L +IE  VN+ I +N PV  R     
Sbjct: 572 EITLGEHIRQAGSYVDSKKIRLDFTHNKALSPEDLLAIETIVNEKIRENDPVTIREALYS 631

Query: 658 DAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D  +S       G KY D VRVVS         S  LCGGTH  +TG+I    I  E ++
Sbjct: 632 DVTSSSEIKQFFGDKYGDVVRVVSAG------FSHELCGGTHAQATGDIGYFRITKEHAV 685

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             GIRRIEAITG+ A +   GQD  L  +AS ++  +  ++ ++  + EE R+L    A 
Sbjct: 686 ATGIRRIEAITGEDAETLARGQDADLNEIASVIQSPKDQILVKIRNVIEEKRELAKQVAD 745

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + QL  + +      C KI +  ++ ++++E + + ++   +AL K+I +  I L    
Sbjct: 746 LENQLVQQHVKSLLPACDKIDETLYLGYLLTEEEGQRIQQYANALHKEIPANFISLWVTE 805

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           K  +  VLI V++DL+ R  +A  L         GG  GG+   AQ          + + 
Sbjct: 806 KSGRYIVLIRVSDDLIKRGIHAQVLLEELLAP-YGGRCGGKAISAQGSSKELPPI-EVLN 863

Query: 891 G-VASFL 896
             +  ++
Sbjct: 864 KTLRQWI 870


>gi|91217166|ref|ZP_01254128.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91184766|gb|EAS71147.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 872

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/931 (34%), Positives = 479/931 (51%), Gaps = 95/931 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   +R  FLEFF+   H ++ S+ ++  +DPTLMF N+GM  FK  F G   P    
Sbjct: 1   MKSTL-LRRQFLEFFKSKSHTIVNSAPIVLKDDPTLMFINAGMNQFKPYFLGNSIPKETR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           VT  QKC+R  GKHNDL+ VG+   HHT FEMLGN+SFG YFK+ AI  AW+ LT   ++
Sbjct: 60  VTDSQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEFLTDVLEI 119

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY+T+++ D+        EA+ LWK +  +  DKI+     DNFW M + GPCGP 
Sbjct: 120 SKDNLYVTIFEGDKVDGLQKDSEAYDLWKTL--VKEDKILLGDKKDNFWEMGDQGPCGPA 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + +EIWNLVF+Q+ ++       LP   IDTGM
Sbjct: 178 SEIHVDLRSKEEKAKIPGKDLVNRDHPQVVEIWNLVFIQYNRKADGSLESLPAKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+  V+Q KT+NYD D+F  LI+  E +TG  Y    +  +  RVI DH+R+ +F I
Sbjct: 238 GFERLCMVVQGKTSNYDTDVFTPLIREIETITGTTYGKTEDTDIAIRVISDHIRAVTFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L    P +  L+  L  +MG A+PELI  K 
Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAIRYGFTFLNIQTPFIYKLVEVLSKQMGDAFPELISQKN 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L E  +  E++ F KTL++GL LLD +++     +I++G  AF+LYDT G P+D+   IL
Sbjct: 358 LCENVIHEEEKSFLKTLEQGLGLLDSIVNE-SSSKIISGQKAFELYDTFGFPIDLTTLIL 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G A +D   F   L++Q+ R++A +    S         + +     +FIGYD    
Sbjct: 417 SEKGYA-LDQKGFEVQLQKQKQRSKAAAQTSSSDWV------VLKTDDQGEFIGYDDTEA 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
              + + RKV  +K                            G+  ++VF+ TPFY E G
Sbjct: 470 DVSITKYRKVTSKK---------------------------EGELYQLVFNLTPFYPEGG 502

Query: 526 GQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ+GD G     +G  + + D +K+   I      + + + +        +D   R++ +
Sbjct: 503 GQVGDKGYLETPNGDTVFVIDTKKENNQIIHITKSLPKDLQK---DFKAVVDLSQRQRTA 559

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+ATHLLH AL +ILG+HV Q GS +    LRFD +H   +T  EL++IED VN  I 
Sbjct: 560 SNHTATHLLHQALRSILGTHVEQKGSMVHSGYLRFDFSHYSKLTQEELQAIEDFVNARIK 619

Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +NL     R +  + AI  GA AL G KY D VR V          S  LCGGTHV +T 
Sbjct: 620 ENLTFEEERTIPYDVAIDKGAIALFGEKYGDTVRFVKFGN------SKELCGGTHVENTS 673

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++    I +E+S+ +GIRRIEAIT   A+  L  + + L  + S L     +V+  VE +
Sbjct: 674 KLWHFIINNEASVASGIRRIEAITSDAAKEFLTKESDVLSQVKSILN-KPQDVLKSVESL 732

Query: 764 WEEYRKLQLIHAK---RKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE   L+    +    KL+    ++      I  + F++H +  +D+  +K +   L  
Sbjct: 733 QEENTTLKKEIEQLNVLKLKQVKTEVQSQLKDINGIQFLAHQV-NLDANAMKDLAFQLGG 791

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVL----------GGG 866
           +     ++L    +  KA +   +++ L+    +NA  + +   K +             
Sbjct: 792 EHTDLFVVLAS-KQNGKALLACYISKALVESKSWNAGKIIKSLGKHIQGGGGGQAFFA-- 848

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                     +GG N     QA+A   + ++
Sbjct: 849 ---------TAGGRNPEGIPQALAEAKTIVE 870


>gi|269126369|ref|YP_003299739.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311327|gb|ACY97701.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 889

 Score =  766 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/928 (34%), Positives = 487/928 (52%), Gaps = 81/928 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +   FL FF++ GH ++PS+SL+   DPTL+   +GMVPFK  F GQ  P    +
Sbjct: 1   MESAEVARRFLAFFEERGHTVVPSASLVA-EDPTLLLVPAGMVPFKPYFLGQRTPPAPRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT+     
Sbjct: 60  TSAQKCVRT----PDIDEVGKTTRHATFFQMLGNFSIGDYFKEGAIPYAWELLTRPVSDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +L++TVY +D+EA  +W +  G+  ++I R    DN+W M   GP GPCSEI+
Sbjct: 116 GFGFPEDKLWVTVYLDDDEAADIWHRKVGIPVERIQRRGLADNYWHMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E+WNLVFMQ +    + +        LP  +IDTGMGL
Sbjct: 176 YDRGPAY-GREGGPIADEDRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMA +LQ   N Y+ D  + ++  + ++TG +Y  +    V+ RV+ DH+R+ + L+AD
Sbjct: 235 ERMAAILQGVDNIYETDTLRRILDKAAELTGTRYGRDRRADVSLRVVADHVRAGTMLVAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G++PANEGRGYVLRR++RRA+   RLLG     LM  L       MG  Y ELI     I
Sbjct: 295 GVIPANEGRGYVLRRLLRRAIRNLRLLGGQDAGLMHELTAVAIAAMGEQYTELISTAANI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDIL 405
              + +E+ERF +TL  G  + D  ++       ++L+G  AF L+DT+G P+D+  ++ 
Sbjct: 355 HAVIDAEEERFLQTLRTGTAIFDAAVAETKRAGKQVLSGSQAFTLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEK-YGATQFIGYDLL 463
             +GL+ +D   F + LEEQR RA+A +    +G  +  +   L ++  G   F+GY  +
Sbjct: 415 AEQGLS-VDEEGFRRLLEEQRQRAKADAAAKKTGNLDVSVLGELLDRAGGKVDFLGYHDV 473

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
            G                        + V  ++  G  V  A +G +VEVV D+TPFYAE
Sbjct: 474 TG-----------------------EARVVGLLVNGASVPAAGAGTEVEVVLDRTPFYAE 510

Query: 524 AGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQL D G    G G  +++ DVQ    G+ VH   V  G  +   +    ID + RR 
Sbjct: 511 GGGQLADQGRIRTGGGAEIEVHDVQSPLPGLIVHRGKVRAGEAQAGDTAFAEIDVERRRA 570

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S +H+ATH++H      LG   +Q GS  +P   RFD T + P+  + L+ +ED VN +
Sbjct: 571 ISRSHTATHMVHAGFRRALGESAAQAGSENSPGRFRFDFTSAGPVPPSVLRDVEDEVNAV 630

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  +L V     + E A A GA AL G KY D VRVV V     G +S  LCGGTHV+ +
Sbjct: 631 LVDDLDVRAFTTSIEQARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVARS 685

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G++ L+ ++ ESSI AG+RRIEA+ G  A   L  +   +  L+  LKV +  +  R+  
Sbjct: 686 GQLGLIKVLGESSIGAGVRRIEALVGIDAFRFLARESVLVSQLSEQLKVRKEELPERIST 745

Query: 763 IWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHII----SEVDSKELKSVMDAL 816
           +    R+ +    + +    L V         D++ ++++         + +L+ +   +
Sbjct: 746 VIGRLREAEKELERLRSAQVLAVAGSLADSAKDIDGIAYVAHRAPDGTTADDLRKLALDV 805

Query: 817 QKKIQS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARL---------SAKVLGG 865
           + ++ S   ++L+    + +  V++ VTE   +R   A  L  +           K    
Sbjct: 806 RGRLASRPAVVLITGVPKDRPVVVVAVTEGARERGLKAGALVGVAAKALGGGGGGKDDLA 865

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVA 893
                     Q GG +    D+A+A V 
Sbjct: 866 ----------QGGGADPTAIDKALAAVE 883


>gi|154508867|ref|ZP_02044509.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798501|gb|EDN80921.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC
           17982]
          Length = 902

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/934 (33%), Positives = 492/934 (52%), Gaps = 72/934 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT +L++F+K GHE+ PS SL+   +P+++FT +GMVPF    TG E   +   
Sbjct: 1   MRTSEIRTRWLDYFEKQGHEIRPSVSLVSP-EPSILFTIAGMVPFIPYITGVEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
            +VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           ++ LD  R ++T++D+D+EAF +  K  G+    I+R+   +NFW   + GP GPC+E  
Sbjct: 116 KYGLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMG 229
           +D+G        G + +  G+RY+E+WNLVF Q+ +             L K +IDTG G
Sbjct: 176 YDRGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMRGEGSGKDYPLLGELDKKAIDTGAG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDH 278
           LER+A V+Q+K N Y+ID    +I+A+ Q++G +Y             ++ V  RV+ DH
Sbjct: 236 LERLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +RSS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL A    M ++YP
Sbjct: 296 VRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHG 395
           EL      I E   +E++ F +TL  G  +LD  ++   + +   +++G  AF L+DT+G
Sbjct: 356 ELEINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTYG 415

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YG 453
            P+D+  ++   +G++ +D   F   + EQ+ RARA +    +G T+   F   EK   G
Sbjct: 416 FPIDLTLEMAAEQGVS-VDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMGG 474

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            + F+GY                             + V+A++  G     A +  +VEV
Sbjct: 475 GSTFLGY-----------------------TEQAAEATVEALLVDGVAAPAASAPAEVEV 511

Query: 514 VFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +       
Sbjct: 512 ILDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKAY 571

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID + R  ++  H+ATH+++  L  ++   ++Q GS  +P  LRFD  H   +  ++L
Sbjct: 572 AEIDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQL 631

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE  VN+ +A++L V T +M+ + A  +GA AL G KY   VRVV++    G      
Sbjct: 632 SDIEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTI----GDGFDRE 687

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV +TG I  + ++SE S+ +G+RRI+A+ G  A      +   +  L+  +   
Sbjct: 688 LCGGTHVPATGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGGR 747

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEV-DS 806
              +  R+E +  + R+ +    K +    +        S   I  V  ++  + E+  +
Sbjct: 748 ADELPERIESLLAKLRESEKELEKIRTAQALSQGADLAASAKAIGPVTVVASAVGEMPSA 807

Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863
             L+++   ++ ++ +  G ++ +G     K S+++   E   +    A  L R   K +
Sbjct: 808 DALRTLALDVRDRLGNDRGTVVALGGVIGGKPSLVVATNEAAREASAKAGALVRAVGKHM 867

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGGGG GR  +AQ GG        AI  +   ++
Sbjct: 868 GGGGG-GRDDIAQGGGTKPEGIADAIDAIRKEIE 900


>gi|290986366|ref|XP_002675895.1| alanyl-tRNA synthetase [Naegleria gruberi]
 gi|284089494|gb|EFC43151.1| alanyl-tRNA synthetase [Naegleria gruberi]
          Length = 957

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/968 (30%), Positives = 473/968 (48%), Gaps = 96/968 (9%)

Query: 1   MSNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY- 58
           +     IR  F+EFF+K   H  +PSSS++P  DPTL+FTN+GM  FK IF GQ  P   
Sbjct: 14  VWTSKEIRKQFVEFFEKKYEHTFVPSSSVVPHEDPTLLFTNAGMNQFKAIFLGQASPDSS 73

Query: 59  ----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
               +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LL
Sbjct: 74  LAKLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAITWAWELL 133

Query: 115 TKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+ + L++ RLY+T +          DEEA ++W +   +  D I+  +  DNFW M +T
Sbjct: 134 TEVYGLEKDRLYVTYFGGNEKLNLPADEEAKQIWGQF--VPDDHILPGSMKDNFWEMGDT 191

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI +D+           + +    +EIWN VFM+F ++  Q    LP   +DT
Sbjct: 192 GPCGPCSEIHYDRIGGRNAAH-LVNMDDPNVLEIWNNVFMEFNRKEDQTLEYLPAKHVDT 250

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVD 277
           GMGLER+ ++LQ K +NYD D+F  + +A ++ TG +                 +RVI D
Sbjct: 251 GMGLERLVSILQNKMSNYDTDVFMPIFEAIQKETGSRPYTGKLGAEDVDHIDTAYRVIAD 310

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
           H+R+    ++DG  P N GRGYVLRRI+RRA+ +   +   +  +  L   +   MG  +
Sbjct: 311 HIRTLVIALSDGGYPDNTGRGYVLRRIVRRAVRFGEFMNAKKGFLTRLASCVVELMGDFF 370

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHG 395
           PEL +    +EE ++SE+  F KTL  GL   + +   +  +   +++G  AFKLY T+G
Sbjct: 371 PELKKNSEKVEELIQSEEVLFAKTLRVGLKFFNRIAEKMKSNGESVVSGPDAFKLYATYG 430

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +   +G+  +D++ + + +E+        S G     T+             
Sbjct: 431 FPVDLTLIMAQEQGMT-VDMVEYKKEMEKHA----TASQGTKQEATD------------- 472

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQK---V 511
             +   ++   K   E +    Q     +   + + V AI  +    VEE  +  +   +
Sbjct: 473 --MKLGVIETDKLQNELKIEPTQDDIKYVWENIQAKVVAIFSESSGFVEELNTECEEVNI 530

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER----GILRT 567
            ++ DQT FYAE GGQ  D G        L++ +VQK   G  +H   V      G +  
Sbjct: 531 GIILDQTNFYAEGGGQAPDNGVLRIGETELKVVNVQK-FAGYILHIVNVSESKLAGNVTV 589

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++   ++Y+ R  ++ NH++TH+L+ AL  +LG+   Q GS +  + L FD + +K  
Sbjct: 590 GTTVSSEVNYERREPIAANHTSTHMLNFALRKVLGTDCDQQGSIVKEEELCFDFSAAKAP 649

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---- 682
           +  ++  +E  VND+I  + PV +++  R+ A   +G  A+    Y ++VRVVS+     
Sbjct: 650 SVEQVAEVEKIVNDLIVADHPVFSKVQERDAAYEINGLRAMFSANYGEQVRVVSIGQDSD 709

Query: 683 -------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
                   E   + S   CGGTH+  T +     I+SE SI  G RRI A+T + A+  +
Sbjct: 710 SIMTDRSNEKWRLISVEFCGGTHLKQTSQAQTFVILSEKSISTGKRRIVALTRKAAKEAV 769

Query: 736 MGQD------EKLKSLASFLKVSQ-----------GNVV--------GRVEEIWEEYRKL 770
                     ++L+ L+  L   +            ++          R+E    + RK+
Sbjct: 770 ERAQKFSVKIDELEKLSDELFCPRYYELTSELTLLTDIPLLSKKAFEKRLEACQTKVRKI 829

Query: 771 QLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           Q    K   +   + +    +  +   +  ++ +++    +  +  +   + +  + L+ 
Sbjct: 830 QQSQKKDDAEKANQLISQLKESIEQKSLKSLVYQLEDGSDQKFVKKVIDALTTIPVCLIS 889

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            + +K   VL  V ++     +A        KV+  G GGG+P  AQ  G + +K  +A+
Sbjct: 890 KADDKTIIVLASVPQEQTATLSANTWVTEVCKVVS-GKGGGKPIFAQGRGSDVSKVAEAV 948

Query: 890 AGVASFLK 897
                  K
Sbjct: 949 KLAEEMAK 956


>gi|170590129|ref|XP_001899825.1| Alanyl-tRNA synthetase [Brugia malayi]
 gi|158592744|gb|EDP31341.1| Alanyl-tRNA synthetase, putative [Brugia malayi]
          Length = 962

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/972 (30%), Positives = 444/972 (45%), Gaps = 95/972 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F+ FF+   H  + SSS+IP +DPTL+F N+GM  +K IF G  +P      
Sbjct: 5   TCDEVRAAFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSSEMAK 64

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLTK 
Sbjct: 65  LKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWELLTKV 124

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   RLY++ +  DE        E  ++W  I G+    I+     DNFW M + GPC
Sbjct: 125 LGIPGERLYVSYFGGDEKTGLDADEECRQIWLNI-GVPPSHILSFGMKDNFWEMGDVGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVFMQF ++       LP+  ID G+G
Sbjct: 184 GPCSEIHYDRV-GNRDASHLVNADDPMVVEIWNLVFMQFNREEDGSLKQLPRKHIDCGLG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+  VLQ K +NYD D+F  L  A    T ++               + +RVI DH+R
Sbjct: 243 FERLVAVLQNKLSNYDTDIFTPLFXAIHNGTKVRPYSGKVGADDVDGIDMAYRVIADHIR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  ++DG  P N GRGYVLRRI+RR + YA   L      +  L+P +   +G  +PE
Sbjct: 303 TLSIALSDGGRPDNTGRGYVLRRILRRGVRYANEKLSAPPGFLSSLVPTVVNLLGKTFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +    + + +  E+++F KTL RG  L    ++ L    IL GDVA++LYDT+G PLD
Sbjct: 363 LHKDPQAVMDIINDEEKQFLKTLSRGRTLFQKAVAGLQGHNILPGDVAWRLYDTYGFPLD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   RGL  +D   F       R +A   S    +   + I   +       +  G
Sbjct: 423 LTQLMAEERGL-LVDFEVFENC----RQKAAGISAAHANKMRDTIDLDV-NAISELKNKG 476

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
                 S   K        +  +        I+ A+ +    ++   SG    ++ D+T 
Sbjct: 477 IPATDDSPKYKYYALSSEDQQTLYNFEKCEGIILALRKDKIFLDTLNSGDFGALILDRTN 536

Query: 520 FYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ DTG    +  G    +++VQ +  G  V    VE G L     ++  ID 
Sbjct: 537 FYAEQGGQIFDTGVLTEVDKGSEFIVSNVQIR-GGYVVLVGTVE-GQLCVGDKVIQAIDE 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH+L+ AL  ++G  V Q GS + PD LRFD+T  +P+T  +++ +E 
Sbjct: 595 DRRNLIMKNHTGTHVLNFALRKVIGE-VEQKGSLVAPDRLRFDLTAKQPLTYEQIRMVEK 653

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--------- 688
               +I  N  V  + +   +A            Y D VR+VSV      +         
Sbjct: 654 ESQMLIDTNATVFAKNVPLAEARQINGLR---AAYPDPVRIVSVGIPIEELLRNKDSDLA 710

Query: 689 --HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              +   CGGTH+ + G I  L I  E +I  GIRRI A+TG  A   +   D   + + 
Sbjct: 711 VNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRLEQRVE 770

Query: 747 S------------FLKVSQGNVVGRVEEIWEEYRKLQL-----IHAKRKLQLNVEDLSCH 789
                          K        RV E++EE  + QL        ++K +   + L  H
Sbjct: 771 DAHHKITTDHMVNLDKAQFKAATKRVLELFEEINQSQLPYCRKESIRKKAKALQKLLDMH 830

Query: 790 KIADVNFMSHII-----------------------SEVDSKELKSVMDALQKKIQSGIIM 826
                  ++  +                          + K L S   AL+   +S  IM
Sbjct: 831 DREAKAVLADKVRCEASELDSSLKDGTLFTVHVFSKGANGKVLDS---ALKSITKSHAIM 887

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
              +S + K   +  V++D+  +   A +      +VL  G GGG    AQ+ G N    
Sbjct: 888 GFSVSDDGKVVAVARVSKDVASKGLQASEWISRVCQVL-DGRGGGTITQAQATGNNAELV 946

Query: 886 DQAIAGVASFLK 897
           ++A      F +
Sbjct: 947 EEAAQIALKFAE 958


>gi|328874134|gb|EGG22500.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 961

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/981 (30%), Positives = 482/981 (49%), Gaps = 106/981 (10%)

Query: 1   MSNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           M++V+ IR TF++FF +   H  +PSSS+IP +DPTL+F N+GM  FK IF GQ  P   
Sbjct: 1   MTSVNEIRKTFIDFFSEKCQHTFVPSSSVIPHDDPTLLFANAGMNQFKPIFLGQADPRSE 60

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
               +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LL
Sbjct: 61  QAKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWELL 120

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T  + LD+ RLY + +        + D EA  LW +   L A++++     +NFW M +T
Sbjct: 121 TVVYKLDKERLYASYFGGDAAKGLEADTEARDLWLQF--LPAERVLPFGMKENFWEMGDT 178

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI FD+ E   G     + +    IEIWN VF+Q+ ++  +    LP   +DT
Sbjct: 179 GPCGPCSEIHFDKVEGRKGAAALVNADDPTLIEIWNNVFIQYNREADKSLRPLPNKHVDT 238

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGN--------NIVNHRVIV 276
           GMGLER+ +++Q    NYD D+F  +    ++VTG    Y G           + +RVI 
Sbjct: 239 GMGLERLTSIIQNVGTNYDTDIFMPIFAEIQKVTGYPHPYGGKVGSDDPEQVDMAYRVIA 298

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ SF IADG +P++EGRG VLRRI+RRA+ Y +  L         L+  +    G 
Sbjct: 299 DHIRTLSFSIADGAVPSSEGRGQVLRRILRRAVRYGKQKLNAPSGFFAKLVDIVVQNFGD 358

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDT 393
            +PEL      I   L  E++ F + LDRG+V  D ++  + +   ++     A+ LY +
Sbjct: 359 FFPELRNRPQHIVSVLEREEKMFARALDRGIVEFDRMVDKVKQQGSKVFPASNAWYLYSS 418

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G P+D+ + ++  +GL  +D+  + +  +E   R R                 L+++  
Sbjct: 419 FGFPIDLTKLMVDEKGLE-LDMDGYQKLADEDAERGR-----------------LRQRSK 460

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK--- 510
            T+ +       S    +  K        +    + ++VKAI      V    S      
Sbjct: 461 KTE-MNMQAEPISILQGDGVKPTIDSHKYE-QKEIETVVKAIYDGKVFVNSLESTDTTRN 518

Query: 511 --VEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIV--ERGI 564
               +V + T FY E GGQ+ D G      D   +      K   G  VH   +  +   
Sbjct: 519 TVYGIVLESTNFYPEQGGQIYDIGNINSVVDQTTIFNVSDCKVFGGYVVHIGYITADAAA 578

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           ++    + LT+DY  R  +  NH++TH+++ AL  +LG +V Q GS +    LRFD ++ 
Sbjct: 579 IKVGDKVELTVDYTRRSPIMSNHTSTHMINFALRNVLGDNVEQRGSLVDDSKLRFDFSND 638

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE- 682
           + +T  E+  ++  VND+IA+ LPV  + ++   A   +G  A+ G  Y D VRVVSV  
Sbjct: 639 RGMTRQEIIKVDQIVNDLIAKELPVSCKEVDLARAKTINGLRAVFGEVYPDPVRVVSVGK 698

Query: 683 ----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                       +   +S   CGGTH++++ +     I SE ++ AGIRR+ A+TG  A 
Sbjct: 699 SVDELLANPTNPEWTQYSIEFCGGTHINNSKDAEYFAITSEEALAAGIRRVVAVTGSDAT 758

Query: 733 SHL------------------MGQDEKLKSLASFLKVSQG-----------NVVGRVEEI 763
                                    + + +L + L   QG            ++  ++E+
Sbjct: 759 VVFENNKKLQARFQEATKFTGKELKDAIPTLTALLNEHQGKISASKKFELVEILSSIQEL 818

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSKELKSVMDALQKKIQ 821
            ++  K +  +  ++ Q+ V+ +S   +   +  ++  I + + +  +   + ++QKK  
Sbjct: 819 AKKQYKEEEANLIKEAQVLVDQISNQLVESKSPIYVGTINAGLSNTLMSDSIKSIQKKCP 878

Query: 822 SGIIMLVGISKEKKASVLIVV----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
              ++L+   +EK    +I +    +        A D     +  LGG GG G+P +AQ 
Sbjct: 879 DTSVLLISKDEEKGKICVISIVPKGSTAETKGLKANDWVVKVSAALGGKGG-GKPDVAQG 937

Query: 878 GGPNGNKADQAIAGVASFLKK 898
            G +  K D+A+    SF +K
Sbjct: 938 AGTDIAKIDEALEFAKSFAQK 958


>gi|119195813|ref|XP_001248510.1| alanyl-tRNA synthetase, cytoplasmic [Coccidioides immitis RS]
          Length = 1023

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/967 (31%), Positives = 476/967 (49%), Gaps = 98/967 (10%)

Query: 6    SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
             +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       + 
Sbjct: 78   KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 137

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
                QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L
Sbjct: 138  AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 197

Query: 121  DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  RLY+T ++ ++        E   LW  + G+  D I+     DNFW M + GPCGPC
Sbjct: 198  EPDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPC 256

Query: 173  SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            SE+ +D+           + +    +EIWN VF+Q+ ++++     LP   +DTGMG ER
Sbjct: 257  SEVHYDRIGGRNAAH-LVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 315

Query: 233  MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
            + +VLQ+K +NYD D+F  L  A  ++TG++                 +RV+ DH+R+ +
Sbjct: 316  LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDVDGIDTAYRVVADHVRTLT 375

Query: 284  FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
            F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ 
Sbjct: 376  FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 435

Query: 342  QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLD 399
            + +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D
Sbjct: 436  KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 495

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            + Q +   RGL+ ID + F +A    R +A+  S G     ++ +  S+ +         
Sbjct: 496  LTQLMAEERGLS-IDNVEFEEA----RLKAKEASKGQAKAASDLLKLSVHD--------- 541

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
                     +++D+              + S + AI    E V+       G ++ ++ D
Sbjct: 542  ------LSKLEKDKVPKTNDDAKFGRGNILSQIVAIYHDKEFVDSTSGIPEGDQIGIILD 595

Query: 517  QTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +T FYAE GGQ  DTG  I DG   L + +VQ    G   H   ++ G L    S++   
Sbjct: 596  KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMY-GGYVFHTGFIKYGDLSVGDSVISEY 654

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            D   R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L+ I
Sbjct: 655  DELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKI 714

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE---------- 684
            E+   + I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E          
Sbjct: 715  EEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKD 774

Query: 685  -DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
                  S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A            
Sbjct: 775  PRWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGD 834

Query: 737  ------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
                         ++++ K + + L     + V +           +++ E  + LQ   
Sbjct: 835  RLNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQE 894

Query: 775  AKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K  L          +  D +  +  + +  ++K +   ++  + K++   I +     E
Sbjct: 895  IKAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAE 954

Query: 834  -KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              + +    V+  L     +A + + + + ++ GG  GG+   +   G   ++ D+AI  
Sbjct: 955  QGRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEA 1013

Query: 892  VASFLKK 898
               +L++
Sbjct: 1014 ATKYLEQ 1020


>gi|193656980|ref|XP_001950431.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon
           pisum]
          Length = 955

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/954 (33%), Positives = 471/954 (49%), Gaps = 75/954 (7%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           + +   IR  +++FF  K GHE + SSS++P +DPTL+F N+GM  FK IF G   P   
Sbjct: 2   VPSAKEIRDRYIKFFIDKKGHEYVYSSSVVPVDDPTLLFANAGMNQFKPIFLGTVAPSSD 61

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
              ++     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK    Q AW+ L
Sbjct: 62  MAKWKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTEICQWAWEFL 121

Query: 115 TKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+EF L   RLY+T +  D+        E   +W K+ GL+ D II     DNFW M ET
Sbjct: 122 TQEFKLSPDRLYVTYFGGDKKSGLEPDLECKNIWLKL-GLAEDHIIPGNMKDNFWEMGET 180

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI +D+           +++    +EIWNLVFMQ+ +  +     LPK  ID 
Sbjct: 181 GPCGPCSEIHYDRIGNRLA-ADLVNQDDPDVLEIWNLVFMQYNRNQEGTLHNLPKKHIDC 239

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVD 277
           GMG ER+ +V+Q+K +NYD DLF+ L  A +  T         G        + +RV+ D
Sbjct: 240 GMGFERLVSVIQDKRSNYDTDLFQPLFVAIQNGTNAPPYEGKVGADDIDQKDMAYRVLAD 299

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G  
Sbjct: 300 HARTLTIALSDGGSPDNTGRGYVLRRILRRAVRYATEKLNGKPGFFATLVNVVVDLLGDT 359

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PE+ +    I E +  E+E+F +TL RG  LL+  +  L  D+++ G+VA+KLYDT+G 
Sbjct: 360 FPEITKDPQQIIEIINEEEEQFLRTLSRGRNLLNRTILKLT-DKVIPGEVAWKLYDTYGF 418

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   ++  +G   ID+ ++ +A    + +A+  S     G  E I   +       Q
Sbjct: 419 PVDLTYLMVEEKGFT-IDMEAYEEA----KKKAQLISQNKVGGDKEVISLDVHA-LADLQ 472

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S      + V             +S V +I    + V E  + Q+  ++ D
Sbjct: 473 TKGISTTDDSPK-YNYKAVSDDADAEYTFETCTSTVLSIRLINQFVNEVDTFQECGIILD 531

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +T FYAE GGQ+ D G  + D       +  +   G  +H  I+E G L+    +VL ID
Sbjct: 532 KTCFYAEQGGQIYDQGSMVKDEFTEFYVNNVQLRGGYILHVGILESGSLKVGDKVVLKID 591

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + RR +  NH+ATH L+H L  +LG +++Q GS + PD LRFD  +   +T  ++  +E
Sbjct: 592 EKRRRFVMNNHTATHTLNHTLRVVLGDNLNQKGSLVAPDKLRFDFNNKAALTGDQVAKVE 651

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV-----------SVEYE 684
              N++I +N  V  +I    DA    G  A+    Y D VRVV             E  
Sbjct: 652 KLTNEVIKRNDTVYAKIAPLNDAKRIKGLRAMFDETYPDPVRVVSVGVTVDKLLTDPEGN 711

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G   S   CGGTH+  TG +    I+SE +I  GIRRI A+TG  A       +E  K 
Sbjct: 712 SGLETSVEFCGGTHLHKTGHMECFTILSEEAISKGIRRIVAVTGPEATKAYNRGEELKKD 771

Query: 745 LASF------LKVSQGNVVGRVEE------IWEEYR--------------KLQLIHAKRK 778
           +         L  +  +   ++ +      + EE R              + QL+    +
Sbjct: 772 VMKLDSKDVNLSKAIIDTQDKINKSVIPYWVKEELRSVLSGLKKGIAEEERKQLVAQASE 831

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +  +++   C +     F+  +    ++K + +V+  L+  + +  IML+    E K   
Sbjct: 832 VAKSIKTKICSESDKTVFIYKLDVGSNTKVMDAVLKLLKADMPNISIMLLSEDTEGKRIY 891

Query: 839 L-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
              VV++DL  +   A       A     G GGG+   AQ+ G N    +Q I+
Sbjct: 892 CQCVVSKDLNKKGLMANKWVTKIAS-CINGKGGGKADTAQASGCNETGVEQLIS 944


>gi|255003991|ref|ZP_05278792.1| alanyl-tRNA synthetase [Anaplasma marginale str. Virginia]
          Length = 879

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/910 (40%), Positives = 508/910 (55%), Gaps = 57/910 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           ++SSIR  FLEFF KNGH+L  S+ L+   D +L+FT++GMVPFK  FT           
Sbjct: 5   SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L +
Sbjct: 65  ASQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLSK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            RL+ITVY ED+EAF +WKKI+G   D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGEH 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
           + GG PGS   +G R+ E+WNLVFMQF +    E   LP   IDTGMGLE  A V+Q   
Sbjct: 185 VQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLE-TAAVVQGVC 243

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           +NYD DLFK +I+ S+ V G     NN + HRVI DH+R+++FLI++G+ P NEGR YVL
Sbjct: 244 DNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYVL 300

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356
           RRI+RRA+ YA  L  +   +  +LP L  E     MG AYPEL++ +  I  TLRSE E
Sbjct: 301 RRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEGE 360

Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
            F  TL RG+ LL+  +  L   ++L GDVAFKLYDT G PLDI  DI   RGL   D  
Sbjct: 361 GFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQE 419

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
            FN+ + EQ+  A     GL      ++W  L+ ++  T+F+GYD               
Sbjct: 420 GFNKGMGEQKGLASTGW-GLVKMLPHRLWEELQAQHKNTRFVGYD--------------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                        + V +I + G  V+   SG+K  ++ D +PFYAE+GGQ GD G   G
Sbjct: 464 --------CCSTKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSITG 515

Query: 537 DGIR--------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
                        ++T  +K +  + +H   +  G+     ++   ID   R +L  NHS
Sbjct: 516 VSGVNNSGGANIAEVTYTRKASN-LHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 574

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH  L T +  ++ Q GS +  D LRFD  ++  +T  ++  IE  VN  I  N P
Sbjct: 575 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKP 634

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V+T   + E A+  GA AL G KY++   RVVS+        S  LCGGTHV  TG+I  
Sbjct: 635 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 688

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             IVSES I  G+RRIEAITGQ     L    + L  ++  L V  G V   +E + +E 
Sbjct: 689 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEVSEGLERLLKEK 748

Query: 768 RKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            +L+        ++    +   +  A V         +    +   M + +K  +   I 
Sbjct: 749 LELKKKLVCAWHEIIKSSISPVNCGAGVVLHCGYFPTIPVDAIMEFMKSARKAERG--IF 806

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +  + + KA ++I V +       A +L +  A +   G GGG   +A+          
Sbjct: 807 AIATAVDGKAVLIIGVGDTANKVLGASELVKTLADL--QGKGGGNAGLARVS-LEVGNVQ 863

Query: 887 QAIAGVASFL 896
           +A++ + + +
Sbjct: 864 EALSTILNKV 873


>gi|88856253|ref|ZP_01130913.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88814572|gb|EAR24434.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 884

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/916 (33%), Positives = 478/916 (52%), Gaps = 55/916 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L +F + GH ++PS+SL+  +DPTL+FT +GMVPF    TG     +   
Sbjct: 1   MQTADIQNRWLTYFGERGHTIVPSASLV-SDDPTLLFTVAGMVPFVPYLTGLVPAPFDRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116
           T+ QKC+R      D++ VG+T RH TFF+M GNFSFG YFK+ AIQ AW+ LT      
Sbjct: 60  TSSQKCIRT----LDIEEVGKTPRHGTFFQMNGNFSFGDYFKKEAIQFAWEFLTLPESDG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L++TVY++D++A   WK+ +GL  ++I R+  + N+WS  + GP GPCSEIF
Sbjct: 116 GLGFLPEDLWVTVYEDDDDAVAYWKETAGLPDERIQRLGMDTNYWSTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF-----ILPKMSIDTGMGLE 231
           FD+G    G   G + + +RY+EIWNLVFMQ+ +   + +       LP  +IDTGMGLE
Sbjct: 176 FDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGEGKGKEFSILGELPNQNIDTGMGLE 234

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289
           R+A + Q   N Y+ID  + ++  + +++G  Y  ++   V  RV+ DH+RSS  LIADG
Sbjct: 235 RVAFLKQGVENMYEIDQVRPVLDMAAELSGHTYGADHEADVRLRVVADHVRSSLMLIADG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+NEGRGYVLRR++RR +   RLLG        L PA    M  AYPE+ +    I  
Sbjct: 295 VTPSNEGRGYVLRRLLRRTVRAMRLLGVEGTTFAELFPASRDAMKDAYPEVEKDYDRISR 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407
            + +E++ F +TL  G  +LD  + H  +     L  D AF L+DT G P+D+  ++   
Sbjct: 355 VVLAEEDTFLRTLASGTTILDTAVVHTKESGASELPSDTAFLLHDTFGFPIDLTLEMAAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL+ +D  +F+  ++EQR RA+A +        +   +     +G T F GY+ L    
Sbjct: 415 AGLS-VDREAFDTLMKEQRDRAKADASSKKQYLADLSVYGAFRAHGETTFTGYETLETD- 472

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S V  I+  G  V  A SGQ  E++  +T  YAE+GGQ
Sbjct: 473 ----------------------SSVIGIIVDGVSVSRAASGQIAEIILAETSLYAESGGQ 510

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  +G    L++ DVQ+  +G+  H   +  G +         +D   RR  +  H
Sbjct: 511 EADAGAIVGASFHLEVLDVQRPVKGLISHKVRITAGEVGVGDPATALVDADWRRGATQAH 570

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH++H AL  ILG    Q+GS      +R D + S+ +++     IE+  N  +  NL
Sbjct: 571 SATHVIHAALRQILGKDAHQSGSYNKAGYMRLDFSWSQALSAETKSEIEEVANTAVRDNL 630

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V TRIM  +DA   GA AL G KY D VRVV +    GG  S  LC GTHVS + EI L
Sbjct: 631 EVSTRIMALDDAKDLGAMALFGEKYGDTVRVVEI----GGPWSLELCAGTHVSRSAEIGL 686

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + +V ESS+ +  RR+E++ G  A  +   +   +  L S LK  +  +  R+ E+    
Sbjct: 687 ISLVGESSVGSSNRRVESLVGMNAFRNFAAERAIVSELTSSLKTPREQLPDRIAELMANL 746

Query: 768 RKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQ 821
           +  +   A+ +     + +         +  VN +   + E+ S  +L+ ++ ++++++ 
Sbjct: 747 KSAERKIAQLEAGQLSQRVPALIESARALGSVNAVIENVGELPSTDDLRGLVQSVRERMG 806

Query: 822 -SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
               ++ +  +   K +V++   +       A      +A  + GGGGGG+P +AQ GG 
Sbjct: 807 AEASVVALAATIGDKPAVIVATNDASRAHGFAAGALAKAAAGVLGGGGGGKPDIAQGGGA 866

Query: 881 NGNKADQAIAGVASFL 896
           N      A+A + + L
Sbjct: 867 NPAAIPDALALITATL 882


>gi|308485186|ref|XP_003104792.1| CRE-AARS-2 protein [Caenorhabditis remanei]
 gi|308257490|gb|EFP01443.1| CRE-AARS-2 protein [Caenorhabditis remanei]
          Length = 966

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/973 (29%), Positives = 462/973 (47%), Gaps = 97/973 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P     
Sbjct: 5   TASEVRSTFINFFKEKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLA 64

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT 
Sbjct: 65  KLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY++V+  DE        EA ++W+ + G+  ++I+     DNFW M + GP
Sbjct: 125 VYGIPSERLYVSVFGGDEATGVPADSEAREIWRSV-GVPDERILNFGMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   ID G+
Sbjct: 184 CGPCSEIHYDRI-GNRDASHLVNADDPMVVEIWNLVFIQFNREEGGSLKTLPAKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+  V+Q+KT+NYD D+F+ + QA  + +G++    +          + +RV+ DH+
Sbjct: 243 GLERLIAVMQDKTSNYDTDIFQPIFQAINKGSGVRAYTGHIGDDDKDGIDMAYRVVADHI 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P + + +G  +P
Sbjct: 303 RTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFASLVPVVISILGETFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397
           EL +    + + +  E+++F KTL RG VL    +  L    +   GDVA++LYDT+G P
Sbjct: 363 ELSRDPETVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDVAWRLYDTYGFP 422

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ Q +   +GL+ +D+ +F +        AR  ++   S  T K   +L     A   
Sbjct: 423 ADLTQLMAEEKGLS-VDLTAFEE--------ARKKAIETSSAGTGKFRDTLDLDVHALAD 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +    +  +    +       +    +         + AI + G+ V+E V+G++  ++ 
Sbjct: 474 LQQKGVPTTDDTPKYAYSFTGEGADAVYKFEPCVGKILAIRRDGKFVDELVAGEEGAILL 533

Query: 516 DQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           D+T FYAE GGQ+ D G       +     +++ Q    G ++       G  +    + 
Sbjct: 534 DRTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQ--VRGGYIVLVGSSEGNFKIGDDVN 591

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   ++ +  NH+ TH+L++AL  +L     Q GS + PD +RFD T+   +TS ++
Sbjct: 592 QRFDEDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVAPDRMRFDFTNKAAMTSEQV 650

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--------- 682
           K  E+    +I     V  +     DA   +G  A+    Y D VRVV+V          
Sbjct: 651 KQAEEYAQQLINTKGQVYAKNSPLADAKKINGLRAMFDETYPDPVRVVAVGTSVEQLLQN 710

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMG 737
               +G   +   CGGTH+ +   I  + I SE +I  GIRRI A+TG    RA +    
Sbjct: 711 PDAPEGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEADRAIARADR 770

Query: 738 QDEKLKSLASFLKVSQ--------GNVVGRVEEIWEE----------------------- 766
            + +L   +   K  +          +  +++EI +E                       
Sbjct: 771 LEARLVEESKHAKNQELLANKDKFKELQKKIQEIVDEANGALLPSWRKDSLRKKAKDVQK 830

Query: 767 ----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               Y K Q      K+    ++L+         +    S  +SK + + +  L+     
Sbjct: 831 DMDGYSKAQQAAVAEKVLGEAKELAAASEQPAVLVHVFTSNANSKAIDNALKLLKDT--K 888

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            ++         K   L  V + L+    A +       VL GG GGG+   AQ  G N 
Sbjct: 889 AVMAFSVNEDTGKVLCLAKVDKSLVSSLKANEWVNEVCTVL-GGKGGGKDANAQLTGENV 947

Query: 883 NKADQAIAGVASF 895
           +K D A+     F
Sbjct: 948 DKLDAAVELAQKF 960


>gi|254581276|ref|XP_002496623.1| ZYRO0D04378p [Zygosaccharomyces rouxii]
 gi|238939515|emb|CAR27690.1| ZYRO0D04378p [Zygosaccharomyces rouxii]
          Length = 956

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/966 (31%), Positives = 470/966 (48%), Gaps = 93/966 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R  FL+FF+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRKAFLDFFKSKDHKFVASSPVVPYDDPTLLFANAGMNQYKPIFLGTVDPSSDFYH 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  AW+LLTK 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKQGAISYAWELLTKV 129

Query: 118 FDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   RLY+T ++ D         EAF+LWK + G+    I+     DNFW M + GPC
Sbjct: 130 YGLPADRLYVTYFEGDPKNGLEADMEAFELWKSV-GVDESHILPGNAEDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI FD+           + +    +E+WNLVFMQF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHFDRIGG-RNAASLVNMDDPDVLEVWNLVFMQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ+  +NYD D+F  L     +VTG++                 +RV+ DH+R
Sbjct: 248 FERVVSILQDYRSNYDTDVFTPLFARIHEVTGVRPYAGKFGAEDTDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           +  F IADG +P NEGRGYVLRRI+RR   +AR             L+P L +++   +P
Sbjct: 308 TLVFAIADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGDFFSRLVPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +           + L+G   ++LYDT+G 
Sbjct: 368 EVAKDPSYLFEILNEEEVSFAKTLDRGERLFEKYADAATSSGKKTLDGLQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++      G+   +     + E  G   
Sbjct: 428 PVDLTELMAEEKGLT-IDGPGFEKAKQESYEASKRGGKKDGAEVLKLNVHEISELNGE-- 484

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                                +         V S +  +    + V E    G+K  V+ 
Sbjct: 485 ----------------NVPKTKDEYKYGMENVDSTILKLHDGTKFVNEISEPGKKYGVIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG  + D +    + +VQ    G   H   +  G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKLVIDDVAEFNVENVQ-LYNGFVFHTGSLLEGKLSVGNKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG+ + Q GS + P+ LRFD +H K + + E+  
Sbjct: 588 YDELRRFPIKNNHTGTHILNFALREVLGNDIEQKGSLVAPEKLRFDFSHKKGMAADEILK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N  I +N+ V  + +   DA +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNKQIKENMSVYYKDVPLTDAKSIYGVRAVFGETYPDPVRVVSVGKSVDDLLANPS 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
            E+   +S   CGGTHV  TG+I +  I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWSKYSVEFCGGTHVVKTGDIKVFVILEESGIAKGIRRIVAVTGSEAYEAQRIANEFD 767

Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L+  L       VS+  +  +  +I +  +      AK+
Sbjct: 768 KELNAVDRLPFSPLKEKKLKELSVKLGQLSISVVSKQELKTKFAKIEKVVKDEIKTRAKQ 827

Query: 778 KLQLNVEDLSCHKIADVN--FMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV-GISKE 833
           + +  ++++  +   + N  F++  +    ++K +   ++ ++   +   I L  G   E
Sbjct: 828 ESKKTLDEVKEYFAKNENSQFLAKFVDIPTNAKAITEAVNYVKSSAKDKSIYLFTGNDPE 887

Query: 834 KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K +    +++  L    +   +A+  + ++ GG  GGR ++ Q  G     A  A+A V
Sbjct: 888 GKIAHGCYISDAALSKGIDGSTVAKQVSGII-GGKAGGRGNVFQGMGDKPTAAGDAVAEV 946

Query: 893 ASFLKK 898
               K+
Sbjct: 947 EKLFKE 952


>gi|311742342|ref|ZP_07716151.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313970|gb|EFQ83878.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 886

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/906 (35%), Positives = 486/906 (53%), Gaps = 61/906 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL  F+  GH ++PS+ L+  + P L+F N+GMVPFK  F GQE P +   
Sbjct: 1   MDTAEIRRRFLAHFENAGHTVVPSAPLLLDD-PNLLFVNAGMVPFKPYFLGQETPPWPTA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG+T RH TFF+M GNFSFG YFKE AI  AW L+T      
Sbjct: 60  TSVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAITHAWRLITGSINDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D   +++TV   D+E+ ++WK+++GL  ++I      DN+W M   GP GPCSEI+
Sbjct: 116 GLGIDADTIWVTVLHSDQESREIWKRVAGLPDERIQDRGLLDNYWHMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230
            D+G    G   G   + +R++EIWNLVFMQ E  +   +        LP  +IDTGMGL
Sbjct: 176 VDRGPEF-GPDGGPVVDEDRFLEIWNLVFMQEEITDVLAKDRFEVVGALPHQNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ+K N Y+ID    +I+ + Q++G  Y  +  + V  RVI DH+RS   L+ D
Sbjct: 235 ERVAYLLQDKRNLYEIDEVYPVIETASQISGRTYGRDHADDVRFRVIADHVRSGLMLMGD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NE RGYVLRR++RRA+   RLLG+ +P +  LLP     M ++YPEL      IE
Sbjct: 295 GVTPGNEARGYVLRRLLRRAVRSMRLLGFEDPALPLLLPVSLERMKASYPELEADFPRIE 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +   +E+E F +TL +G  + +G  + + +     L+GD AF L+DT+G P+D+  ++  
Sbjct: 355 QVAYAEEEAFRQTLGKGTQIFEGAAAAVKQQGGSGLSGDAAFTLHDTYGFPIDLTLEMAS 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRG 465
            +GL+ +D   F   + EQRSRA+A +     G  +  ++ +  +  G T ++ Y  L  
Sbjct: 415 EQGLS-VDEDGFRALMAEQRSRAKADAKSKKGGHADTAVYRAALDAGGPTDWLAYSTL-- 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V A++  G  V    +G   EVV D+TPFYAE+G
Sbjct: 472 ---------------------TTESRVLALIAGGRTVPAIGAGSVGEVVLDRTPFYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    DG R ++ DVQ+   G+ VH   V  G L  E  L   +D + R     
Sbjct: 511 GQNADAGHLQWDGGRAEVLDVQRPVRGLVVHQVRVLDGELTVESPLEAAVDPEWRLGARQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LG    Q+GS   P  LR D   S  ++  +L+ +E+  N  +  
Sbjct: 571 AHSGTHVVHAALREVLGPTALQSGSYNRPGYLRLDYGWSGALSPDQLRGVEEASNRALRA 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +LPV  + M+  +A   GA AL G  Y + VRVV +    GG  S  LCGGTHV  + +I
Sbjct: 631 DLPVTAQTMSLPEAREWGALALFGETYGEDVRVVEI----GGPWSRELCGGTHVDRSSQI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + I S+ S+ +G RR+EA+ G     +L  + + ++ L   LK    +V  RV+++ E
Sbjct: 687 GTVVITSDGSVGSGNRRVEALVGIEGFQYLAKERDVVRQLTDLLKAKPDDVPSRVQDLME 746

Query: 766 EYRKLQLIHAKRKLQ---LNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             R  +    + K         DL+     +  V F+   +  V   +L+++   ++ +I
Sbjct: 747 RLRAAEKAAERIKAAELLAGAGDLAHGAVDVGGVAFVGARLDGVGGGDLRTLALDVRGRI 806

Query: 821 QS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +    ++ LVG+  + K +V++ V +   DR  +A  L R + + +GG GG G+  +AQ
Sbjct: 807 PADRPAVVALVGVV-DDKPAVVVAVNQAGRDRGLSANTLVRAAGEQIGGRGG-GKDDVAQ 864

Query: 877 SGGPNG 882
            GG + 
Sbjct: 865 GGGTDP 870


>gi|303321650|ref|XP_003070819.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240110516|gb|EER28674.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1023

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/967 (30%), Positives = 476/967 (49%), Gaps = 98/967 (10%)

Query: 6    SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
             +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       + 
Sbjct: 78   KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 137

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
                QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L
Sbjct: 138  AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 197

Query: 121  DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  RLY+T ++ ++        E   LW  + G+  D I+     DNFW M + GPCGPC
Sbjct: 198  EPDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPC 256

Query: 173  SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            SE+ +D+           + +    +EIWN VF+Q+ ++++     LP   +DTGMG ER
Sbjct: 257  SEVHYDRIGGRNAAH-LVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 315

Query: 233  MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
            + +VLQ+K +NYD D+F  L  A  ++TG++                 +RV+ DH+R+ +
Sbjct: 316  LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRTLT 375

Query: 284  FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
            F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ 
Sbjct: 376  FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 435

Query: 342  QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLD 399
            + +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D
Sbjct: 436  KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 495

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            + Q +   RGL+ ID + F +A    R +A+  S G     ++ +  S+ +         
Sbjct: 496  LTQLMAEERGLS-IDNVEFEEA----RLKAKEASKGQAKAASDLLKLSVHD--------- 541

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
                     +++D+              + S + A+    E V+       G ++ ++ D
Sbjct: 542  ------LSKLEKDKVPKTNDDAKFGRGNILSQIVAVYHDKEFVDSTSGIPEGDQIGIILD 595

Query: 517  QTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +T FYAE GGQ  DTG  I DG   L + +VQ    G   H   ++ G L    S++   
Sbjct: 596  KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMY-GGYVFHTGFIKYGNLSVGDSVISEY 654

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            D   R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L+ I
Sbjct: 655  DELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKI 714

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE---------- 684
            E+   + I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E          
Sbjct: 715  EEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKD 774

Query: 685  -DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
                  S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A            
Sbjct: 775  PRWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGD 834

Query: 737  ------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
                         ++++ K + + L     + V +           +++ E  + LQ   
Sbjct: 835  RLNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQE 894

Query: 775  AKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             K  L          +  D +  +  + +  ++K +   ++  + K++   I +     E
Sbjct: 895  IKAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAE 954

Query: 834  -KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              + +    V+  L     +A + + + + ++ GG  GG+   +   G   ++ D+AI  
Sbjct: 955  QGRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEA 1013

Query: 892  VASFLKK 898
               +L++
Sbjct: 1014 ATKYLEQ 1020


>gi|198437569|ref|XP_002125465.1| PREDICTED: similar to alanyl-tRNA synthetase [Ciona intestinalis]
          Length = 967

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/987 (32%), Positives = 466/987 (47%), Gaps = 122/987 (12%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           N   +R  FL FFQ+   H  + SSS IP +DPTL+F N+GM  FK+IF G   P     
Sbjct: 6   NSKQLRQMFLSFFQEKYAHTYIHSSSTIPLDDPTLLFANAGMNQFKSIFLGTISPADPLS 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             + V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK+ AI  AW+LLT+
Sbjct: 66  KCKRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGCWSFGDYFKKDAINWAWELLTE 125

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              + + RLY T ++  E        E   LW  +  L AD I+     DNFW M + GP
Sbjct: 126 VLKIPKDRLYATYFEGSEEYNVPVDTEVQNLW--LQHLPADHILPGNMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI FD+           + +    +E+WNLVFMQF ++   +  +L K  +DTGM
Sbjct: 184 CGPCTEIHFDRIGGRNAAH-LVNMDDPEVLEVWNLVFMQFNREKDGKLKLLAKQHVDTGM 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q K +NYD D+F  L +A +  TG +               + +RV+ DH+
Sbjct: 243 GLERLVSVIQGKLSNYDTDMFTPLFKAIQLGTGAREYQGKVGKDDVDGVDMAYRVLADHI 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RRA  +A   L         L+  +   +G A+P
Sbjct: 303 RTLTIALSDGGRPDNVGRGYVLRRILRRATRFAVEKLNAKPRFFSSLVHVVVDILGEAFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLP 397
           E+I+   ++ + +  E+E+F KTL+RG  +L+  +  L  D ++  G+ A+ LYDT+G P
Sbjct: 363 EIIRDPQMVIDIIDEEEEQFLKTLNRGRKILNQKIKSLDADAKVFPGETAWLLYDTYGFP 422

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ + +    GL  +D  SF +A    +++AR  S G      + I   +         
Sbjct: 423 FDLTEIMAEESGLT-VDCESFEKA----KAQARITSKGFAQDVADTICLDVHMLTD---- 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVEV 513
                L+  KF   D     Q    D         + +VKAI+Q    V    SG +  +
Sbjct: 474 -----LKEKKFPPTDDSFKYQYSSNDNGEYSFPACTGVVKAILQNKTFVTSVSSGAECGI 528

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQL D G          + T    + +G +V H     G L    S+ 
Sbjct: 529 LLDKTCFYAEQGGQLFDLGYFKKQEDEFTEFTVKNCQVQGGYVLHVGTVAGTLEVGDSVE 588

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID Q R+ L  NHS TH+L+  L  +LG    Q GS + P+ LRFD T  K +TS ++
Sbjct: 589 LFIDEQRRQSLMKNHSCTHILNFGLRCVLGE-ADQRGSLVAPNRLRFDFTAKKAMTSQQV 647

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--------- 682
           K  ED  N I+ ++  +  + +  + A A  G  A+    Y D VRV+SV          
Sbjct: 648 KETEDVCNQIVNKDEVIYAKPVPLDQAKAIHGLRAIFDETYPDPVRVLSVGVSVDSLVAD 707

Query: 683 --YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG--- 737
             ++     S  LCGGTH+  +G      I+SE +I  G+RRI A+TGQ A         
Sbjct: 708 PNFDAAMNTSVELCGGTHLLRSGHADKFIIISEEAISKGVRRIVAVTGQEALKAERKANL 767

Query: 738 ---------------------------------------------QDEKLKSLASFLKVS 752
                                                        + E+++  AS LK  
Sbjct: 768 LAKSFETIKSEVEKGLVNNKENYKTFSKKCTDFIELVSQASISQWRREEMRGFASSLKKK 827

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             +V  RV  + E   KL L   K  +Q +              ++ + +  ++K L   
Sbjct: 828 VDDV-DRV--MKENATKLALAQTKESIQQDPNATF--------VVTELKTNGNAKSLNEA 876

Query: 813 MDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870
           +   + +     +ML  I KE  K   L  V     D+   A    +  A  L  G GGG
Sbjct: 877 LKIYKSESPDTSVMLFSIDKEANKIVCLSQVPASANDKGLTANGWVQSIATTLN-GKGGG 935

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
           +   AQ+ G N +  ++AI     F K
Sbjct: 936 KSTSAQAVGRNPDGLNEAIQLAKEFAK 962


>gi|164660846|ref|XP_001731546.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966]
 gi|159105446|gb|EDP44332.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966]
          Length = 963

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/968 (33%), Positives = 483/968 (49%), Gaps = 100/968 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R+TFL+FF++  H  +PSSS +P +DPTL+F N+GM  +K+IF G   P       
Sbjct: 14  AAKVRSTFLDFFREKEHTFVPSSSTVPYDDPTLLFANAGMNQYKSIFLGTVDPSSEFSKL 73

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW LLT+ +
Sbjct: 74  RRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISFAWKLLTEVY 133

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   RLY+T ++ D         E  ++W+K+ G+  ++I++    DNFW M  TGPCG
Sbjct: 134 GLPSDRLYVTYFEGDPKQGLEPDVETLEIWRKV-GVPDERILKGNAKDNFWEMGATGPCG 192

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    IE+WN VF+QF ++       LP   IDTGMG 
Sbjct: 193 PCSEIHFDRVGG-RNAASLVNMDDPDVIEVWNNVFIQFNREEDGSLRPLPARHIDTGMGF 251

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ ++LQ+K +NYD D+F  L    +++TG +                 +RV+ DH+R+
Sbjct: 252 ERLVSILQDKRSNYDTDVFMPLFSRIQELTGARPYSGKLGAEDVDGLDTAYRVVADHIRT 311

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P  +GRGYVLRRI+RR   + R             L+P L  +MGS +PE
Sbjct: 312 LTFAISDGCIPDKDGRGYVLRRILRRGTRFVRKYFQVPIGAFFSQLVPTLVEQMGSFFPE 371

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           + +    ++  L  E++ F +TLDRG  L +   +    +    L+G   ++LYDT+G P
Sbjct: 372 ITRKTKELQAILNEEEQSFARTLDRGEKLFEQYANAARTEGRTKLSGADVWRLYDTYGFP 431

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +   +GL   D   F +A  E +  ++       +   +     L         
Sbjct: 432 VDLTSIMAEEQGLT-FDQAEFEKAQAESKEASKGQGKQQEALAVKLDVHDLG-------- 482

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE----AVSGQKVEV 513
               L   +   + +       P +       + VKAI Q+ + V +    A +G+   +
Sbjct: 483 ---HLDADASVPQTNDVFKYDTPSM------QAHVKAIFQEHKFVSDSNSLAKAGEPFGI 533

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + DQT  YAE+GGQ  DTG  + DG    +++DVQ  + G  +H   ++ G L     +V
Sbjct: 534 LLDQTNMYAESGGQQADTGSLVIDGKAEFEVSDVQ-ASNGYVLHIGFLKYGKLSVGDQVV 592

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           ++ D   RR L  NH+ TH+L+  L  ILG HV Q GS + P  LRFD +H  P+  +EL
Sbjct: 593 VSYDESRRRPLQNNHTGTHILNFGLREILGDHVDQKGSLVAPSKLRFDFSHKAPVNVSEL 652

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE------- 684
           + IED  N  I +++ V  + M  E+A    G  A+ G  Y + VRVV++E++       
Sbjct: 653 QKIEDISNSFIERDVSVYAKDMVLEEAYKIPGLRAVFGESYPNPVRVVALEFDIDQMAKD 712

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                    S   CGGTHV  TGEI  L +  ES I  GIRRI A+TG  A +     DE
Sbjct: 713 LTNPRWRQTSIEFCGGTHVKKTGEIGRLVVTEESGIAKGIRRIVAVTGDEAVAVTATADE 772

Query: 741 KLKSL------------ASFLKVSQGNV------VGRVEEIWEEYRKLQLIHAKRKLQLN 782
             K L             + LK     +      V R +E+   + K++     R     
Sbjct: 773 ASKRLDEIDQVSDDVAKEAQLKAFSVELARMDISVVRKDELKARFTKIRKALDTRLKARA 832

Query: 783 VEDLSCHKIA---------DVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             D+   + A         D    ++ + +  +SK L+S + A+ +K+   + +    S 
Sbjct: 833 AADVKVAQEAVQTYFNENPDARVYIAQLDTGANSKALQSGV-AVARKLNKSVYLFARESG 891

Query: 833 EKKASVLIV--VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG--GPNGNKADQ 887
            +K   L    V +D L+R  +AV   +  ++ L  G GGG+P  AQ    G   +  D+
Sbjct: 892 SEKTKTLYGNFVPKDELERGLDAVSWNKAVSEKL-QGRGGGKPDGAQGQGEGTKAD-VDE 949

Query: 888 AIAGVASF 895
           AI    SF
Sbjct: 950 AIKLAQSF 957


>gi|308235922|ref|ZP_07666659.1| alanyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
          Length = 894

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/928 (34%), Positives = 492/928 (53%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F  +GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  F+  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPKY-GNDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K    D I+ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K++      F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VEV+ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E+GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ESGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEI----GDGWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLE 745

Query: 762 EIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVDS----KELKSVMD 814
            +  + +      +   + +L   V +L          +   +  V +      L+    
Sbjct: 746 SLLNKMKDSDRKLSSVYESQLNDAVPELVEAAKQSGATVKLAVKNVGNFGSFDALRKTTL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      I+ L G+++E +  V +   +   D    A DL R ++KVLGGGGG G
Sbjct: 806 DVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVLGGGGG-G 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+  V S + K
Sbjct: 865 KPDFAQGGGTDASKIDEALDAVKSEVAK 892


>gi|326491819|dbj|BAJ98134.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1004

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/962 (31%), Positives = 456/962 (47%), Gaps = 96/962 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  F++FF+   H   PSS ++P  DPTL+F N+GM  +K +F G   P          
Sbjct: 60  VRQVFIDFFRSRAHTPWPSSPVVPFEDPTLLFANAGMNQYKPVFLGAADPDSPLGRLRRA 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK++AI  AW+LLT+ + L 
Sbjct: 120 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKDQAIAYAWELLTQVYKLP 179

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             R+Y T +  D+        ++  +W K   L  ++++     DNFW M +TGPCGPC+
Sbjct: 180 TDRIYATYFGGDDKAGLAPDTDSKDIWLKY--LPTERVLPFGCKDNFWEMGDTGPCGPCT 237

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG ER+
Sbjct: 238 EIHFDRI-GNRDAASLVNNDDPTCIEIWNLVFIQFNREADGTLRSLPAKHVDTGMGFERL 296

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------KYEGNNIVNHRVIVDHLRSS 282
            ++LQ K +NYD D+F  L  A  ++ G               G   + +RV+ DH+R+ 
Sbjct: 297 TSILQNKMSNYDTDVFMPLFDAIHKLAGAGIQPYSGKVGSDDVGKVDMAYRVVADHIRTL 356

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SF IADG  P N+GR YVLRRI+RRA+ +    L   +     L+      MG  +PEL 
Sbjct: 357 SFAIADGSRPGNDGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVFPELK 416

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399
             +  I++ ++ E+  F  TL +G          + ++   +L+G  AF L+DT+  P+D
Sbjct: 417 DNEKNIKDIIKEEEASFESTLAKGYERFKKAADAVKENGGTVLSGQDAFVLWDTYDYPID 476

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +    GL+ +D+  FN A+EE R +AR      G         S+     AT  + 
Sbjct: 477 LTEVMAVDFGLS-VDMEGFNIAMEEARQKARNARYKAGGK-------SIVLDANATSHLR 528

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
              L                 P       SS+VKAI    E +  A   +   +V + T 
Sbjct: 529 NQGLAS-----------TNDSPKFKHEVHSSVVKAIYTGSEFIATASGDEDFGLVLESTS 577

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI----LRTEMSLVLTI 575
           FYAE GGQ+ DTG   G      + +VQ    G  +H      G     L     +   +
Sbjct: 578 FYAEQGGQIYDTGSIEGPTGSFTVNNVQ-VFAGYVLHIGSFLEGPNSKALSVGDEVKCKV 636

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY  R  ++ NH+ TH+L+ AL  +LG H+ Q GS + P+ LRFD +H KP+   +L+ I
Sbjct: 637 DYTRRTLIAPNHTCTHMLNFALREVLGDHIDQKGSIVLPEKLRFDFSHGKPVQPEDLRKI 696

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EY 683
           E  VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+           E 
Sbjct: 697 EYIVNQQIKDELEVSAQEIKLVDAKRINGLRAVFGEIYPDPVRVVSIGRKVEDLLANPES 756

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740
           ++    S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T +   +A       D 
Sbjct: 757 KEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLASSIDS 816

Query: 741 KLKSLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQLIHAKRKL 779
            +   +     +                       ++ G V ++ E+ R+ +    K  +
Sbjct: 817 DINEASKLDGATLEKKIGSIKNTLDAAAIPAARKADLKGNVSKLEEQLREAKKKMGKENI 876

Query: 780 QLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-E 833
           Q  V+       A V+      ++H    +D+  ++  +     + +   IM+    +  
Sbjct: 877 QKAVKTAIDAAEAAVSEGKPFCVTHADVGLDTTAVREAVVKAMDRFKGLPIMVFSTDEAS 936

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            KA +   V  D  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+    
Sbjct: 937 NKAVIYAGVPPDAPNGFKVLDWLTPSIAPLKGKGGGGKNGLAQGQGSDASRVKEAMELAT 996

Query: 894 SF 895
             
Sbjct: 997 QI 998


>gi|196231110|ref|ZP_03129970.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196224940|gb|EDY19450.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 925

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/971 (33%), Positives = 473/971 (48%), Gaps = 123/971 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
              + IR +FL+FF++  H ++PSSSL+P + P L+FTN+GM  F  IF G+ K      
Sbjct: 1   MTSAQIRQSFLDFFREKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGERKADVSSW 59

Query: 59  ---------------------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
                                      QKC+RAGGKHNDLD+VG    HHTFFEMLGN+S
Sbjct: 60  ADAVNWFGEKNRDGTLNKTSDTRAADTQKCIRAGGKHNDLDDVGLDTYHHTFFEMLGNWS 119

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWKKISGL- 146
           FG YFK+ AI+ AW+L+   +    +RLY T+Y          D DEEA+ LW +     
Sbjct: 120 FGDYFKKEAIEWAWELVVGRWKFPPQRLYATIYNPDKSIGDPADRDEEAWNLWAEKFRAV 179

Query: 147 ---SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
               A  I+     DNFW M ETGPCGPCSE+  D            ++     IEIWNL
Sbjct: 180 GLDPAVHIVNGNKKDNFWMMGETGPCGPCSELHVDLTPAGDTKGALVNKGTAECIEIWNL 239

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT----------NNYDIDLFKHLI 253
           VF+QF          LP   +DTGMG ER+++++Q             +NY+ D+F+ + 
Sbjct: 240 VFIQFNANPDGTFSPLPAKHVDTGMGFERVSSIIQGTKDFTDFANAKISNYETDIFRPIF 299

Query: 254 QASEQVTGMKY------------------EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
              E+  G +Y                  +    V  RVI DH+R+ SF IADGI P N 
Sbjct: 300 DEIEKQCGKRYTSTLPQPNAQGQIIPESEQEKVDVAFRVIADHIRTLSFAIADGIQPGNT 359

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            R YVLRRI+RRA+ Y R LG+TEP    L+  L   MG  +PE+   +  +EE L+ E+
Sbjct: 360 DRNYVLRRILRRAVRYGRTLGFTEPFFYKLVGVLARTMGDVFPEIRAKQKHVEEVLKREE 419

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           E F +TLD+G+ L    ++   K + L+G  AFKLYDT+G PLD+ + +   RGL  +DI
Sbjct: 420 ESFNRTLDKGIELFTSFVAS-EKQQQLSGTSAFKLYDTYGFPLDLTELMARERGLT-VDI 477

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
             F   +E+QR RAR           + I  S  E    T FIGYD       ++E    
Sbjct: 478 AGFEVEMEKQRKRAREAQ------VRDVIELSEIETKTPTHFIGYDHNHTGADVQE---- 527

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                              +  +G+ V          V+ + +  YAE GGQ+GD+G   
Sbjct: 528 ------------------VLSVKGKTV----------VIANNSVCYAEMGGQVGDSGEMT 559

Query: 536 GDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           G G    +I + QK   G    H + E         + + +D   R  +  +H+ THLLH
Sbjct: 560 GHGGNSWRIANTQKS--GNTWLHFLEEADGPAVGDHVTIQLDGARRGAIQRHHTVTHLLH 617

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++    +Q GS + PD L FD   S  +T  +++ IE  VN+ I +N  V    M
Sbjct: 618 WALHEVVSKEATQKGSFVGPDKLTFDFN-SAALTPVQVRDIERLVNERIVENGSVSWIEM 676

Query: 655 NREDAIASGA-AALLGTKYNDRVRVVSVEYED--GGVHSSALCGGTHVSSTGEIMLLYIV 711
              +    G      G KY + VRVV +  +      +S  LC GTH  +TGEI L  I 
Sbjct: 677 PYAEVRGRGDIMQFFGDKYGETVRVVQIGGQATKLDGYSMELCAGTHTRATGEIGLFRIN 736

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           +ES+I AG+RRIEA  G  A        ++L +LA+ +      +  R+E +  + ++L+
Sbjct: 737 AESAIAAGVRRIEAAAGLNAYDLANADTQRLHALATKVGSPLPELEKRIEGLLAQQKELE 796

Query: 772 ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825
                  +R+     +DL  +  A +N    II+ +   D   L++V DAL+     G+ 
Sbjct: 797 KALKAAQQREAAGRAKDLLAN-AATINGTPAIIANLGAADGDTLQTVADALKSNGFKGVT 855

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           +L G +     +++  V+ D   +  A  + +  A ++GG GG G+P  A+ GG + +K 
Sbjct: 856 VLGGTAN-GAVALVAAVSPDFTAKVQAGKIIQTIAPLVGGKGG-GKPEGARGGGKDPSKL 913

Query: 886 DQAIAGVASFL 896
           ++A+A   + L
Sbjct: 914 EEALAQAKALL 924


>gi|168042124|ref|XP_001773539.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675078|gb|EDQ61577.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 937

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/920 (33%), Positives = 445/920 (48%), Gaps = 89/920 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R TF  FF+   H  +PSS ++P +DPTL+F N+GM  FK IF G   P       
Sbjct: 9   ANRVRETFNSFFESKNHTFVPSSPVVPVDDPTLLFANAGMNQFKPIFLGTVDPRSARGNL 68

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT  +
Sbjct: 69  KRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIAWAWELLTSVY 128

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY T +  DE        EA  +W+ +  L    ++     DNFW M ++GPCG
Sbjct: 129 KLPKDRLYATYFGGDENLGLAADDEARDIWRGL--LPESHVLPFGCKDNFWEMGDSGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +EIWNLVF+QF ++      +LP   +DTG+G 
Sbjct: 187 PCSEIHFDRIGG-RDASSLVNMDDPNCLEIWNLVFIQFNREQDGSLKVLPAQHVDTGLGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
           ER+ +VLQEK +NYD DLF  +  A ++ TG +            N  + +RV+ DH+R+
Sbjct: 246 ERVTSVLQEKMSNYDTDLFTPIFGAIQKATGAREYSGKVGKDDTDNVDMAYRVVADHIRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRR++RRA+ Y R +L   E     L+  +   MG A+PEL
Sbjct: 306 LSFAIADGSRPGNEGREYVLRRMLRRAVRYGREVLKAQEGFFSGLVDIVVEVMGEAFPEL 365

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I+E +  E+  F +TL +G+       + + KD +L    AF L+DT G P+D+
Sbjct: 366 KKNQAKIKEIISEEESSFSRTLVKGIEKFKKAAAEV-KDGVLGAQDAFILWDTFGFPIDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +    GL  +D   FN+ +EE R +AR      G                    +  
Sbjct: 425 TELMAEEMGLK-VDKEGFNRTMEEAREKARGARGKAGGKA-----------------LVM 466

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +    S+  K        KP        +  VKAI       EE+ S + V +V D T +
Sbjct: 467 EAEATSQLQKLGILPTDDKPKYIWHKNPTVTVKAIFTSSGF-EESTSDEDVGIVLDTTSY 525

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+ DTG   G      + +VQ     +    +I   G +     +   +DY  R
Sbjct: 526 YAEQGGQIYDTGVLEGPNGAFTVREVQIYGGYVLHIGSINNGGKISVGDKVTSQVDYARR 585

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
             ++ NH+ THLL++AL  +LG H+ Q GS + PD LRFD +H KPI S +L  IE  V 
Sbjct: 586 AVVAPNHTCTHLLNYALKEVLGDHIDQKGSLVAPDKLRFDFSHGKPIDSKDLGEIEAIVA 645

Query: 641 DIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGGV 688
             I   + V  +  +  +A    G  A+ G  Y D VRVV++           E  +   
Sbjct: 646 QQIRDGMTVYAKEASLAEAKRIMGLRAVFGEVYPDPVRVVAIGRPVEDLLADPENPNWAK 705

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE-------- 740
            S+  CGGTH+S+T E     +VSE  I  G+RR+ A+T   A+  +   +         
Sbjct: 706 LSTEFCGGTHLSNTKEAEAFALVSEEGIAKGVRRVTALTMGAAKEAIHQSEVFSSQIDKA 765

Query: 741 ------KLKSLASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                  L+   + LK S  NVV           R+ E+ E  RK Q   A   LQ  + 
Sbjct: 766 SKLEGPALEKEVASLKNSLENVVIPAAKKAEFRTRLGELQERIRKAQKAAAGSNLQTALN 825

Query: 785 DLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASV 838
                    V       +  I   +D+  ++  +  + +K +   +M+  + ++K K  V
Sbjct: 826 GAVSSADTAVAQNQPFCVLRIDVGLDTNAVREAVTLVMEKHKDLAVMIFSVDEQKNKVLV 885

Query: 839 LIVVTEDLLD-RFNAVDLAR 857
              V +         +D  R
Sbjct: 886 YAGVPDSAAKQGLKVLDWLR 905


>gi|298253344|ref|ZP_06977136.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297532739|gb|EFH71625.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 894

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/928 (34%), Positives = 490/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  ++  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P   + M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKSAMEPSYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K    D I+ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDFAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VE++ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVSAPANVEIILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +V R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLE 745

Query: 762 EIWEEYRKLQLIHAK-RKLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814
            +  + +      A   + QLN       D   +    V      +    S   L+  + 
Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEVKNSNEKVKLALKNVGNFGSFDALRKTVL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      ++ L G++++ +  + +   E        A DL R ++KVLGGGGG G
Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVRTASKVLGGGGG-G 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+    S + K
Sbjct: 865 KPDFAQGGGTDASKLDEALEAAKSEVAK 892


>gi|239917773|ref|YP_002957331.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|281413733|ref|ZP_06245475.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|239838980|gb|ACS30777.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
          Length = 903

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/930 (35%), Positives = 490/930 (52%), Gaps = 76/930 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   I   +  FF+  GH ++PS+SL+   DP+L+FT +GMVPF   F G++ P    
Sbjct: 1   MKS-QEIARRWTAFFESRGHRVVPSASLVSP-DPSLLFTVAGMVPFIPYFLGEQTPPSPR 58

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
           V +VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT     
Sbjct: 59  VVSVQKCIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVED 114

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             F LD  RL++TVY ED+EA ++W++  G+  ++I R+  +DN+W+  + GP GPCSEI
Sbjct: 115 GGFGLDPERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           F+D+G    G   G + +  RYIEIWNLVFMQ+     + +        L   +IDTG+G
Sbjct: 175 FYDRGPAY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELEHKNIDTGLG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280
           LER+A +LQ   N Y+ D  + ++  + Q+ G  Y           ++ V  R++ DH+R
Sbjct: 234 LERLAMILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVR 293

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  LI+DG+ P NEGRGYVLRR++RR +   RL+G TEP+   LLP     M   YP +
Sbjct: 294 SALMLISDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVV 353

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLD 399
                 I     +E++ F +T+  G   LD  +         + G  AF+L+DT+G P++
Sbjct: 354 ADEFERISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  +I    G+A +D   F   + EQR RARA +    SG T+   +      G T F G
Sbjct: 414 LTLEIAEEAGVA-VDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y                         +   S+V+ ++Q GE V  A +G ++E+V D TP
Sbjct: 473 Y-----------------------TEHTTESVVRGLLQNGEEVPSAGAGTELELVLDATP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ  DTG   GDG RL++ DVQ   +G+ VH   V  G +      +  ID Q 
Sbjct: 510 FYAESGGQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQR 569

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      HS THL+H AL  ILG   +Q+GS      LRFD   ++ +++     +ED V
Sbjct: 570 RLDGEKAHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAEALSAGARSEVEDVV 629

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  +  V+T+ M+ E+A A GA +L G KY DRVRVV ++    G  S  LCGGTHV
Sbjct: 630 NIAIRDDHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEID----GAWSRELCGGTHV 685

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T +I  L ++ E S+ +G RR+EA+ G  +  HL  +   +  L+   K     +  R
Sbjct: 686 GRTAQIGSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDR 745

Query: 760 VEEIWEEYRKLQLIHAKRK----------LQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           +    +  +  +   A+ +          L    +D++      V  ++H   +V   +L
Sbjct: 746 IGATLDRLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSGGTSVRVLAHHAGDVAGDQL 805

Query: 810 KSVMDALQKKIQS------GIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSA 860
           +S+   L+ +I+S      G  +LV ++ E K   L+VV  +   R     A  + + + 
Sbjct: 806 RSLALDLRARIESAGGNAAGTPVLVALTAEAKGRPLVVVATNEAARAAGLKAGAMVKTAT 865

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            VLGGGGG G+  +AQ GG +  +   A+ 
Sbjct: 866 GVLGGGGG-GKDDVAQGGGQDVTRVGDALD 894


>gi|315587131|gb|ADU41512.1| alanine--tRNA ligase [Helicobacter pylori 35A]
          Length = 847

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/898 (35%), Positives = 482/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH +  S  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 458 -----AKALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++ +L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-VLKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNTQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APIS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +  K   A++   +
Sbjct: 793 NAP---IKANAWANEVAQILGGKGGGRG--------DFASAGGKDIEKLQAALSLAKN 839


>gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera]
          Length = 960

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/973 (31%), Positives = 461/973 (47%), Gaps = 112/973 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 13  AAKVRDTFISFFEAKEHVNWVSSPVVPLNDPTLLFANAGMNQFKPIFLGTADPNTPLSKL 72

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI+ AW+LLT+  
Sbjct: 73  TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIEWAWELLTEAI 132

Query: 118 ----FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
               + L   R Y T +  DE        EA  +W K   L    ++     DNFW M +
Sbjct: 133 CNKVYKLPTDRFYATYFGGDEQLGLAPDDEARDIWLKF--LPPGHVLPFGCKDNFWEMGD 190

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           TGPCGPC+EI FD+           + +    IEIWNLVF+QF +++      LP   +D
Sbjct: 191 TGPCGPCTEIHFDRI-GNRDATSLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVD 249

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIV 276
           TGMG ER+ ++LQ K +NYD D+F  +  A    TG                 + +RV+ 
Sbjct: 250 TGMGFERLTSILQNKMSNYDTDVFLPIFDAIHLATGAPLYSGKVGTEDVDKVDMAYRVVA 309

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ SF IADG  P NEGR YVLRRI+RRA+ Y   +L   E     L+  +   MG 
Sbjct: 310 DHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVGVVVKVMGD 369

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PEL Q ++ I   + +E+  FGKTL +G+         + + +IL+G  AF L+DT+G
Sbjct: 370 VFPELKQHEMHIRGIIAAEEASFGKTLIKGIEKFKKAAQEV-QGKILSGQEAFVLWDTYG 428

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +   RGL  +D++ FN A++E R R+R        G                
Sbjct: 429 FPLDLTQLMAEERGLT-VDVMGFNIAMDEARERSRNAQNKKAGGAIV------------- 474

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
                D    +   K                   S++KAI    E +E A +G +V ++ 
Sbjct: 475 ----MDADATAALHKMGVAATDDISKFTWFEDHESVIKAIYTGIEFLESAAAGDEVGIIL 530

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVL 573
           + T FYAE GGQ+ DTG   G     Q+ +VQ    G  +H   V  E G       ++ 
Sbjct: 531 ETTSFYAEQGGQIFDTGSLEGSCGSFQVCNVQIY-GGFVLHIGSVTGEIGRFSVGDKVIC 589

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +DY  R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KPI    L+
Sbjct: 590 KVDYDRRKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPIHPDHLR 649

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
            IE  VND I   L V  +     DA   +G  A+ G  Y D VRVV++  +        
Sbjct: 650 RIESIVNDQIKDELDVYGKEATLADAKRINGLRAVFGEVYPDPVRVVTIGRKVEDLLADP 709

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
              +    S+ LCGGTH+S+T E     ++SE  I  GIRRI A+T   A   +      
Sbjct: 710 DNAEWLSVSAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDSAFKAMELAFSL 769

Query: 737 -------------GQDEKLKSLASFLKVSQ------GNVVGRVEEIWEEYRKLQLIHAKR 777
                          ++K+ SL S +  +        ++  ++  + ++ RK Q   A+ 
Sbjct: 770 EQEVDAASDAEGSLLEKKVASLRSRVDAAPIPAPKKADLRTKISLLQDQVRKEQKKIAEE 829

Query: 778 KLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +Q  V+                 +S +   +D+  ++  +  + ++    +++      
Sbjct: 830 NIQKAVKVATEMADGAASDGKAFCISLVDVGLDTTAVREAVLKVIEQKGISVMVFSTDET 889

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNG 882
             KA V   V E+  ++F  ++++      LG       P           +AQ  G + 
Sbjct: 890 TNKAVVYAGVPEN-GEKFKQLEVSEWLTAALG-------PLKGRCGKGKGGLAQGQGTDA 941

Query: 883 NKADQAIAGVASF 895
           +   +A+     F
Sbjct: 942 SLVKEAMDVATKF 954


>gi|297242856|ref|ZP_06926794.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296889067|gb|EFH27801.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 894

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/928 (34%), Positives = 488/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  ++  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K    D ++ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKSLEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VEV+ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVTAPANVEVILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGSPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELAERLE 745

Query: 762 EIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVDS----KELKSVMD 814
            +  + +      A   + +L   V  L          +   +  V +      L+  + 
Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEAKNSNEKVKLALKNVGNFGSFDALRKTVL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      ++ L G++++ +  + +   E        A DL R ++KVLGGGGG G
Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGFGAKAGDLVRTASKVLGGGGG-G 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+    S + K
Sbjct: 865 KPDFAQGGGTDASKIDEALEAAKSEVAK 892


>gi|261219548|ref|ZP_05933829.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|260924637|gb|EEX91205.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 723

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/732 (50%), Positives = 493/732 (67%), Gaps = 36/732 (4%)

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPK 221
           M +TGPCGPCSEIF+D G+ I GG PGS E +G+R+IEIWNLVFMQFEQQ  + R  LP+
Sbjct: 1   MGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPR 60

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
            SIDTGMGLER+A VLQ   +NYDIDLFK LI+ASE+ TG+K EG+   +HRVI DHLR+
Sbjct: 61  PSIDTGMGLERIAAVLQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRA 120

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           SSFLIADG+LP+NEGRGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  EMG AYPELI
Sbjct: 121 SSFLIADGVLPSNEGRGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELI 180

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +A+ LI ETL+ E+ RF KTL+RGL LL     +L + + L+G+ AFKLYDT+G PLD+ 
Sbjct: 181 RAESLISETLKLEETRFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLT 240

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
           QD L  RG+A +D   FN A+E Q++ ARA+  G G   TE IWF +K+K GAT+F+GY+
Sbjct: 241 QDALRQRGIA-VDTEGFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE 299

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
                                        ++ ++V+    V     G+ + VV +QTPFY
Sbjct: 300 T-----------------------ESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFY 336

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E+GGQ GDTG   G+G  + + D QKK EG+FVH   V  G  +    + L +D   R 
Sbjct: 337 GESGGQQGDTGTISGEGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRT 396

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NHSATHLLH AL   LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+  N+
Sbjct: 397 RIRSNHSATHLLHEALRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANE 456

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGG 696
           II QN PV TR+M  +DAIA GA AL G KY D VRVVS+       + G  +S  LCGG
Sbjct: 457 IILQNAPVTTRLMAVDDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGG 516

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV  TG+I L+ I+SE  + AG+RR+EA+TG+ AR +L  QDE++K++AS LK +  +V
Sbjct: 517 THVRQTGDIGLVRIISEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADV 576

Query: 757 VGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELK 810
           + RV  + +E +KL  +L  A++KL L             +  VNF+  I++ V  ++LK
Sbjct: 577 LDRVNALIDERKKLERELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLK 636

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            + D  +K++ SG+++ +G+ ++ KAS +  VTED++ RF+AVDL R ++  LGG GGGG
Sbjct: 637 PLADEGKKQVGSGVVLFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGG 696

Query: 871 RPHMAQSGGPNG 882
           RP MAQ+GGP+G
Sbjct: 697 RPDMAQAGGPDG 708


>gi|317009923|gb|ADU80503.1| alanyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 847

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/898 (35%), Positives = 479/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++    +T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISGLTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +    +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSHTHAYLKESKEMVVKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL K++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNKNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + +A   Q+V V+ ++TPFYAE GG +GD G    D     I
Sbjct: 456 ---CTTKALGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VSDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+  + LK +  +V+  + ++ E  +  Q +          
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKTLLKNN--DVIAGINKLKESVKNSQKVPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANMWANEVAQILGGKGGGRG--------DFASAGGKDIENLQAALNLAKN 839


>gi|225683316|gb|EEH21600.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 962

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/966 (32%), Positives = 473/966 (48%), Gaps = 97/966 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +         EA  LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRIGGRNASH-LVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ KT+NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKTSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
               + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G P+D+
Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID   F +A    R RA+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLK-IDNGEFEEA----RLRAKEASKGQGKLTKDVVKLTVHD---------- 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 480 ----LGLLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVDSSKGIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++   D
Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELAVEDVQ-VYGGYVLHTGFMKYGSFNVNDSVIAEYD 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 595 ELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIE 654

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V  + +    A    G  A+ G  Y D VRVVSV  E           
Sbjct: 655 RISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDP 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + 
Sbjct: 715 RWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGER 774

Query: 745 L---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHA 775
           L               A  L+V    +    V +           +++ E  +  Q + +
Sbjct: 775 LKRFEKMELGPKKEMEAKLLQVDLNQLTISSVEKAQFREKFTQIHKKVLEGQKAAQKLES 834

Query: 776 KRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           K+ L   +      +  D  + +  +    ++K +   ++ ++ K+Q   + +    KE 
Sbjct: 835 KKALDAIMGYFQAPENNDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAADKEA 894

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K      V E+L     +  D A   A V+ GG  GG+  ++   G +  K D AI   
Sbjct: 895 GKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKGPISIGNGTDAEKLDDAIKAA 953

Query: 893 ASFLKK 898
             +L+K
Sbjct: 954 TEYLEK 959


>gi|289706211|ref|ZP_06502574.1| alanine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557050|gb|EFD50378.1| alanine--tRNA ligase [Micrococcus luteus SK58]
          Length = 903

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/930 (35%), Positives = 490/930 (52%), Gaps = 76/930 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   I   +  FF+  GH ++PS+SL+   DP+L+FT +GMVPF   F G++ P    
Sbjct: 1   MKS-QEIARRWTAFFESRGHRVVPSASLVSP-DPSLLFTVAGMVPFIPYFLGEQTPPSPR 58

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
           V +VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT     
Sbjct: 59  VVSVQKCIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVED 114

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             F LD  RL++TVY ED+EA ++W++  G+  ++I R+  +DN+W+  + GP GPCSEI
Sbjct: 115 GGFGLDPERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           F+D+G    G   G + +  RYIEIWNLVFMQ+     + +        L   +IDTG+G
Sbjct: 175 FYDRGPAY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELENKNIDTGLG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLR 280
           LER+A +LQ   N Y+ D  + ++  + Q+ G  Y           ++ V  R++ DH+R
Sbjct: 234 LERLAMILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVR 293

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           S+  LI+DG+ P NEGRGYVLRR++RR +   RL+G TEP+   LLP     M   YP +
Sbjct: 294 SALMLISDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVV 353

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLD 399
                 I     +E++ F +T+  G   LD  +         + G  AF+L+DT+G P++
Sbjct: 354 ADEFERISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  +I    G+A +D   F   + EQR RARA +    SG T+   +      G T F G
Sbjct: 414 LTLEIAEEAGVA-VDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y                         +   S+V+ ++Q GE V  A +G ++E+V D TP
Sbjct: 473 Y-----------------------TEHTTESVVRGLLQNGEEVPSAGAGTELELVLDATP 509

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           FYAE+GGQ  DTG   GDG RL++ DVQ   +G+ VH   V  G +      +  ID Q 
Sbjct: 510 FYAESGGQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQR 569

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      HS THL+H AL  ILG   +Q+GS      LRFD   ++ +++     +ED V
Sbjct: 570 RLDGEKAHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAESLSAGARSEVEDVV 629

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  I  +  V+T+ M+ E+A A GA +L G KY DRVRVV ++    G  S  LCGGTHV
Sbjct: 630 NIAIRDDHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEID----GAWSRELCGGTHV 685

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T +I  L ++ E S+ +G RR+EA+ G  +  HL  +   +  L+   K     +  R
Sbjct: 686 GRTAQIGSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDR 745

Query: 760 VEEIWEEYRKLQLIHAKRK----------LQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           +    +  +  +   A+ +          L    +D++      V  ++H   +V   +L
Sbjct: 746 IGATLDRLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSAGTTVRVLAHHAGDVAGDQL 805

Query: 810 KSVMDALQKKIQS------GIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSA 860
           +S+   L+ +I+S      G  +LV ++ E K   L++V  +   R     A  + + + 
Sbjct: 806 RSLALDLRTRIESAGGNAAGTPVLVALTAEAKGRPLVIVATNEAARAAGLKAGAMVKTAT 865

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            VLGGGGG G+  +AQ GG +  +   A+ 
Sbjct: 866 GVLGGGGG-GKDDVAQGGGQDVTRVGDALD 894


>gi|295672445|ref|XP_002796769.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226283749|gb|EEH39315.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 962

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/966 (32%), Positives = 474/966 (49%), Gaps = 97/966 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +         EA  LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTGMG ER+
Sbjct: 196 EIHYDRIGGRNASH-LVNQDDPNVLEIWNNVFIQYNREQDKSLRSLPNKHIDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
               + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G P+D+
Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID   F +A    R RA+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLK-IDNGEFEEA----RLRAKEASKGQGKLTKDVVKLTVHD---------- 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      D               ++S +KAI    + V        G++  ++ D+
Sbjct: 480 ----LGLLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVNSSKDIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++   D
Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELTVEDVQ-VYGGYVLHTGFMKYGSFNVNDSVIAEYD 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 595 ELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIE 654

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V  + +    A    G  A+ G  Y D VRVVSV  E           
Sbjct: 655 RISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDP 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + 
Sbjct: 715 RWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGER 774

Query: 745 L---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHA 775
           L               A  L+V    +    V +           +++ E  +  Q + +
Sbjct: 775 LKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREQFTQIHKKVLEGQKAAQKLES 834

Query: 776 KRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           K+ L   +      +  D  + +  +    ++K +   ++ ++ K+Q   + +    KE 
Sbjct: 835 KKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAADKEA 894

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K      V E+L     +  D A   A V+ GG  GG+  ++   G + +K D+AI   
Sbjct: 895 GKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKAPISIGNGTDADKLDEAIKAA 953

Query: 893 ASFLKK 898
             +L+K
Sbjct: 954 TEYLEK 959


>gi|320093740|ref|ZP_08025599.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979325|gb|EFW10816.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 918

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/932 (34%), Positives = 485/932 (52%), Gaps = 69/932 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   S IR+ +LEFF    HE+ PS  LI   +P+++FT +GMVPF     G E   +  
Sbjct: 19  LMRTSEIRSRWLEFFAARDHEIRPSVPLISP-EPSILFTVAGMVPFIPYILGTEPAPWPR 77

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117
             +VQKCVR     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW LLT     
Sbjct: 78  AASVQKCVRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDFAWHLLTDPRDQ 133

Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             + LD  RL++T+++ED+ +F  W +  GL A++I R+   +  WS  + GP G C EI
Sbjct: 134 GGYGLDGDRLWMTIWEEDQVSFDYWTREIGLPAERIQRLPFAEISWSTGQPGPAGSCCEI 193

Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKM----SIDTGMG 229
            +D+G    PGG P     G+R++EIWNLVF +F +       F L       +IDTG G
Sbjct: 194 HYDRGAQYGPGGGPVVDTGGDRFLEIWNLVFDEFVRGEGAGHDFELVGKLDRTAIDTGAG 253

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDH 278
           LER+A ++Q+K N Y+ID    +I A+E ++G  Y              + V  RV+ DH
Sbjct: 254 LERLAFIMQDKPNMYEIDEVFPVIAAAEAMSGKTYGLGAAGPEAGEAYADDVRLRVVADH 313

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +RSS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  +  M  LL A    M ++YP
Sbjct: 314 VRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVHDAAMPVLLTASKDAMRASYP 373

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLP 397
           EL      I E   +E++ F +TL  G  +LD  ++        + G  AF L+DT+G P
Sbjct: 374 ELEADWGTISEVAYAEEDAFRRTLSAGTTILDTAVAQARSAGSPIPGASAFSLHDTYGFP 433

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YGAT 455
           +D+  ++   +G+  +D   F   +EEQ+ RARA +    +G T+   F   EK   G +
Sbjct: 434 IDLTLEMAAEQGVK-VDEDGFRALMEEQKERARADARAKKTGHTDVRVFQEIEKRLGGGS 492

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GY                         +G  + V A++  G     A +G  VEVV 
Sbjct: 493 EFLGY-----------------------TESGCDASVVALLVDGHDAPAAQAGADVEVVL 529

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQL D G    +G   +++ DVQ    G+FVH   V  G +         
Sbjct: 530 DRTPFYAEMGGQLADHGTIRAEGGAVIEVNDVQAPIRGLFVHRGTVVEGAVAVGERAFAQ 589

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID + R  ++  H+ATH+++  L  ++G   SQ GS  +P  LRFD  HS  + ++++  
Sbjct: 590 IDTRRRLAIARAHTATHMVYAGLRAVVGQDASQAGSENSPSRLRFDFRHSSALGASQVDD 649

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN+ +A++LPV T +M  E+A ASGA AL G KY  RVRVV++    G      LC
Sbjct: 650 IEALVNEKLAEDLPVTTEVMGIEEARASGAIALFGEKYGSRVRVVTI----GDGFDKELC 705

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV STG +  + ++ E SI +G+RRI+A+ G  A  +   +   +  LAS +     
Sbjct: 706 GGTHVPSTGHLGRVTVLGEGSIGSGVRRIDALVGDGAYEYQAKEHAIVSRLASLVGGRPE 765

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEV-DSKE 808
           ++  RVE +    ++ +    K ++     Q          I  +  +   +  V  +  
Sbjct: 766 DLPERVEALLARLKESEKELEKSRIDQALSQAAGLAARAKTIGRLTGVVAAVGAVPSADA 825

Query: 809 LKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
           L+++   ++ +I    + ++ L G+   K + V+         +  A  L R     LGG
Sbjct: 826 LRTLALDVRDRIGGSGAAVVALAGLVGGKPSLVVATNDGARARKAKAGALVRAVGSFLGG 885

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG GR  +AQ GG       +A+  +   ++
Sbjct: 886 GGG-GRDDIAQGGGTKPEGVGRALEELRRQIE 916


>gi|317157868|ref|XP_001826622.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40]
          Length = 1015

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/970 (32%), Positives = 484/970 (49%), Gaps = 97/970 (10%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               S+R  F+++FQKNGH  + S+ ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 66   TAKSVRDAFIQYFQKNGHTFVASAPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAN 125

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+L+TK 
Sbjct: 126  LKSAVNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKI 185

Query: 118  FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + LD +RLY+T ++  +        EA +LW K  G+  D I+     DNFW M + GPC
Sbjct: 186  YGLDPQRLYVTYFEGSKEGGLSPDLEAKELW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 244

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTGMG
Sbjct: 245  GPCSEIHYDRIGG-RNASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGMG 303

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
             ER+ +VLQ K++NYD D+F  L Q  + +TG +                 +RV+ DH+R
Sbjct: 304  FERLVSVLQNKSSNYDTDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHVR 363

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
            + +F I+DG+ P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 364  TLTFAISDGVAPNNEGRGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMFP 423

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
            E+ + +  + E L  E+  F KTLDRG    +     +    D+ L+G   ++LYDT G 
Sbjct: 424  EVKRKQQDVMEILDEEEISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFGF 483

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ + +   RGL  ID   F +A    RSRA+  S G      + +   + +      
Sbjct: 484  PVDLTRIMAEERGLR-IDDTEFEEA----RSRAKEASKGQKKAAADTVKLDVHD------ 532

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                      K  K +               +++ VKAI          E+   G ++ +
Sbjct: 533  --------LGKLEKMNDVPKTNDSAKFDRGNITAQVKAIYHGKSFHLSTEQIPEGDQLGL 584

Query: 514  VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            + D+T FYAE GGQ  DTG  + DG   L++ DVQ    G  +H   ++ G L     ++
Sbjct: 585  ILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQ-LYAGYVLHTGFMKYGSLSVGDEVI 643

Query: 573  LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
               D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H  P+T  +L
Sbjct: 644  CEYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKDL 703

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
            + IED   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E       
Sbjct: 704  ERIEDISTEYIRQNCAVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILKN 763

Query: 685  ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736
                     S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A         
Sbjct: 764  VKDPRWEKVSIEFCGGTHVQKTGDIKELVILEESGIAKGIRRIIAVTGEDAHEVQRVALG 823

Query: 737  ---------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQ 771
                            +++  K +   L     + V +           ++I +  +  Q
Sbjct: 824  FEKRLDRLEAMALGPEKEQDAKQIQVDLSQLLISAVQKSRFRERFAHINKQIIDSQKAQQ 883

Query: 772  LIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGII-MLVG 829
             + +K+ L+         +  D +  ++ +    ++K +   ++ ++ K+Q   + +L  
Sbjct: 884  KLESKKALEAITSYFENPENKDKSWLVARLPISANAKAVSESLNHVKSKLQDKTVYVLAA 943

Query: 830  ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             S + +      +++ + D   +A D A + +  +GG  GG  P      G N +K D+A
Sbjct: 944  DSNQGRVVHGCYMSKAISDQGASASDWAAIVSTAVGGKAGGKGPTS-IGNGTNPDKTDEA 1002

Query: 889  IAGVASFLKK 898
            IA  + +L K
Sbjct: 1003 IALASDYLSK 1012


>gi|255713044|ref|XP_002552804.1| KLTH0D01848p [Lachancea thermotolerans]
 gi|238934184|emb|CAR22366.1| KLTH0D01848p [Lachancea thermotolerans]
          Length = 955

 Score =  761 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/965 (31%), Positives = 471/965 (48%), Gaps = 94/965 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             S++R+TF+EFF++  H  + SS +IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TASNVRSTFMEFFKQREHTFVASSPVIPYDDPTLLFANAGMNQYKPIFLGTVDPSSDYYS 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK 
Sbjct: 70  LKRAMNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKDAIQYSWELLTKV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++ D+        EAF+LWK + G+S D I+     DNFW M + GPC
Sbjct: 130 YGIPSERLYVTYFEGDQKQGLEPDLEAFELWKSV-GVSEDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN+VF+Q+ ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPNVLEVWNIVFIQYNREQNGTLKSLPSKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F+ L    +++TG +                 +RV+ DH+R
Sbjct: 248 FERLVSVLQDVKSNYDTDVFQPLFARIQEITGARPYEGKFGAEDADGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L  +  + +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSSLAPTLIDQSKAMFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +         KD+ L+G   ++LYDT+G 
Sbjct: 368 EINRDPSYLFEILDEEEASFAKTLDRGEKLFEKYAQAAAQTKDKTLDGLQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++    G     ++ I   + E      
Sbjct: 428 PVDLTELMAEEKGLK-IDGPGFEKAKQESYEASK---KGGKKSASDLIKLEVHEL----- 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L      K D     +         + +IV  I      V+E    G++  V+ 
Sbjct: 479 ----STLNSENVPKTDDSPKYESA------NIEAIVLRIFDGENFVDEISEVGKQYGVIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D T FYAE GGQ  D G  + D +    + +VQ    G   H   +  G L     ++ +
Sbjct: 529 DSTCFYAEQGGQEYDMGTLVIDDVAEFSVENVQ-LYNGYVFHTGQLGEGKLSVGDKVIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG+ V Q GS + P+ LRFD +H K +   ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKKAVALDELKE 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +E   N+ I  NLPV  + +  + A   S   A+ G  Y D VRVVSV            
Sbjct: 648 VERICNEQIKANLPVYYKNVPLDLARKISSVRAVFGETYPDPVRVVSVGKPVDDMLVDPT 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
            E+   +S   CGGTHVS TG+I    I+ ES I  G RRI A++G  A           
Sbjct: 708 SEEWQKYSVEFCGGTHVSKTGDIKEFVIIEESGIAKGTRRIVAVSGSEAYEVQRIANKFD 767

Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       V++  +  +  +I +  +      AK+
Sbjct: 768 SDLIAAEKMPFSPLKEKKLKELGVALGQLSISVVTKQELKDKFAKIEKVVKDEIKTRAKK 827

Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +++  V+++             + +I    ++K +   ++ ++   +   I L   + + 
Sbjct: 828 EIKQTVDEVKNYFAENQEASFLVKYINIPTNAKAITEAVNHMKTSAKDKSIYLF--TGDD 885

Query: 835 KASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           + +    +++  L    +   L    +  + GG  GG+ ++ Q  G      + A+  V 
Sbjct: 886 RVAHGCYISDVALEKGIDGRALLNTVSSNI-GGKAGGKGNVFQGVGDKPEGIETAVKEVE 944

Query: 894 SFLKK 898
           +  ++
Sbjct: 945 NLFRE 949


>gi|283782871|ref|YP_003373625.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441998|gb|ADB14464.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 894

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/928 (34%), Positives = 490/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F KNGH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  ++  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P   T M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKTAMEPSYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K    D ++ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K+       F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VE++ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGSVKSVTAPANVEIILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +V R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLE 745

Query: 762 EIWEEYRKLQLIHAK-RKLQLNVE-----DLSCHKIADVNFMSHIISEVDS-KELKSVMD 814
            +  + +      A   + QLN       D   +    V      +    S   L+  + 
Sbjct: 746 SLLNKMKDSDRKLASVYEAQLNEAVPTLVDEVKNSNEKVKLALKNVGNFGSFDALRKTVL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      ++ L G++++ +  + +   E        A DL R ++KVLGGGGG G
Sbjct: 806 DIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVRTASKVLGGGGG-G 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+    S + K
Sbjct: 865 KPDFAQGGGTDASKLDEALEAAKSEVAK 892


>gi|311114977|ref|YP_003986198.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946471|gb|ADP39175.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 894

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/928 (34%), Positives = 491/928 (52%), Gaps = 67/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F  +GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+M+GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +D+EA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDDEARAIWKNE-GFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  F+  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPKY-GKDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G+KY  NN  +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG  +P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDI 404
           E    E++ F +TL++G  +LD  +    K    D I+ G  AF L+DT+G P+++  ++
Sbjct: 354 EAAYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEM 413

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLL 463
              +G+  +D   F + + EQ+ RARA +L         ++  +K++      F+GY   
Sbjct: 414 AAEQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGYTDF 472

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYA 522
                                     S V AIV+ G+  V+   +   VEV+ D+TPFYA
Sbjct: 473 SSR-----------------------SNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYA 509

Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ D G  I D G  L++ DVQ+  + + VH   +  G L     +   ID   R 
Sbjct: 510 ERGGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRA 569

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L+ +H+ATH LH AL   LG   +Q GS + PD LRFD    K +    L  +E  VN+
Sbjct: 570 ALARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNE 629

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +L VV + M  +DA   GA  L G KY D VRVV +    G   S  LCGGTH  S
Sbjct: 630 RIRDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEI----GDGWSRELCGGTHAKS 685

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I ++ I+SESSI +G+RRI+A+ G+ A  +   +   +  LA  +      +  R+E
Sbjct: 686 TGKIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLE 745

Query: 762 EIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVDS----KELKSVMD 814
            +  + +      +   + +L   V +L          +   +  V +      L+    
Sbjct: 746 SLLNKMKDSDRKLSSVYESQLNDAVPELVEAAKQSGATVKLAVKNVGNFGSFDALRKTTL 805

Query: 815 ALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            ++ ++      I+ L G+++E +  V +   +   D    A DL R ++KVLGGGGG G
Sbjct: 806 DVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVLGGGGG-G 864

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +P  AQ GG + +K D+A+  V S + K
Sbjct: 865 KPDFAQGGGTDASKIDEALDAVKSEVAK 892


>gi|226288201|gb|EEH43713.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 962

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/966 (32%), Positives = 473/966 (48%), Gaps = 97/966 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF+ NGH  +PSSS++P +DPTL+F N+GM  +K IF G  +P       +  
Sbjct: 17  VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD
Sbjct: 77  HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +         EA  LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRIGGRNASH-LVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG +P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPEIKR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
               + E L  E+  F KTLDRG  L +       +  +  L+G   ++LYDT G P+D+
Sbjct: 375 KATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID   F +A    R RA+  S G G  T + +  ++ +          
Sbjct: 435 TQLMAEERGLK-IDNGEFEEA----RLRAKEASKGQGKQTKDVVKLTVHD---------- 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      D               ++S +KAI    + V+       G++  ++ D+
Sbjct: 480 ----LGLLETMDDVPKTDDSAKFGRGNITSQIKAIYHNKKFVDSSKDIPEGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++   D
Sbjct: 536 TNFYAEQGGQEYDTGKIIIDGKAELAVEDVQ-VYGGYVLHTGFMKYGSFNINDSVIAEYD 594

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 595 ELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDLEEIE 654

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V  + +    A    G  A+ G  Y D VRVVSV  E           
Sbjct: 655 RISTDYIRQNCAVYGKDVPLSIAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVHDP 714

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + 
Sbjct: 715 RWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGER 774

Query: 745 L---------------ASFLKVSQGNV----VGRV----------EEIWEEYRKLQLIHA 775
           L               A  L+V    +    V +           +++ E  +  Q + +
Sbjct: 775 LKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREKFTQIHKKVLEGQKAAQKLES 834

Query: 776 KRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           K+ L   +      +  D  + +  +    ++K +   ++ ++ K+Q   + +    KE 
Sbjct: 835 KKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYVFAADKEA 894

Query: 834 KKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K      V E+L     +  D A   A V+ GG  GG+  ++   G +  K D AI   
Sbjct: 895 GKIVHGCHVAENLSQQGASPNDWANSVANVV-GGRAGGKGPISIGNGTDAEKLDDAIKAA 953

Query: 893 ASFLKK 898
             +L+K
Sbjct: 954 TEYLEK 959


>gi|317180966|dbj|BAJ58752.1| alanyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 847

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/898 (35%), Positives = 478/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLHFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+  FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVVFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFETCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 456 ---CCAKALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++LP     M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNVQIFKHLPSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APIS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +  K   A++   +
Sbjct: 793 NAP---IKANAWANEVAQILGGKGGGRG--------DFASAGGKDIEKLQAALSLAKN 839


>gi|317178465|dbj|BAJ56253.1| alanyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 847

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/898 (35%), Positives = 479/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNVYAPNEFAGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+  V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 456 ---CCAKALGFFDSDFKEITEANPNQEAWVLLEETPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EVSIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKNKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +  K   A++   +
Sbjct: 793 NAP---IKANAWANEVAQILGGKGGGRG--------DFASAGGKDIEKLQAALSLAKN 839


>gi|210135400|ref|YP_002301839.1| alanyl-tRNA synthetase [Helicobacter pylori P12]
 gi|210133368|gb|ACJ08359.1| alanyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 847

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/898 (35%), Positives = 480/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECP----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G          I
Sbjct: 458 -----AKALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKGNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED+VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDSVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGKDIENLQAALNLAKN 839


>gi|227495468|ref|ZP_03925784.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831015|gb|EEH63398.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 895

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/931 (33%), Positives = 484/931 (51%), Gaps = 73/931 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   + E+FQ+NGHE+ PS  L+   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIAHRWKEYFQRNGHEIRPSVPLVSP-DPSILFTIAGMVPFIPYIIGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
            +VQKC+R     ND++NVGRT RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASVQKCLRT----NDIENVGRTTRHGTFFQMNGNFSFGDYFKEGAIDFAWELLTGSQETG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED E++ +  +  GL    I+R+  ++NFW   + GP GPC+E  
Sbjct: 116 HYGLDGDRLWVTLWEEDAESYDVLTRKIGLDPKHIVRLPRHENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMG 229
           +D+G        G + +  G+RY+EIWNLVF Q+ +             L   +IDTG G
Sbjct: 176 YDRGPSYGPEAVGGNVDPGGDRYLEIWNLVFDQYLRGEGSGKDYPLLGELDAKAIDTGAG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFL 285
           LER+A V+Q K N Y+ID  + +I A+E ++G  Y G     + V  R++ DH+RSS  L
Sbjct: 236 LERLAFVMQNKPNMYEIDEVRPVISAAEMMSGRTYLGGGDPEDDVRMRIVADHIRSSMML 295

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           I DG++P N+GRGYVLRR++RRA+   RLLG     +  L+P     M ++YP+L     
Sbjct: 296 INDGVVPGNDGRGYVLRRLIRRAVRSMRLLGVDTATLPTLMPVSRDAMKASYPDLETNWE 355

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLG---KDEILNGDVAFKLYDTHGLPLDIMQ 402
            I +   +E+E F +TL  G  +LD  ++          L+G+ AF+L+DT+G P+D+  
Sbjct: 356 RIADVAYAEEETFRRTLSAGTTILDTAVAKAKAAGSATKLSGEEAFQLHDTYGFPIDLTL 415

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGY 460
           ++   +G+  +D   F + + EQ++RAR  +L   +G  + +I+   + + G  + F+GY
Sbjct: 416 EMAKEQGV-DVDEARFRELMLEQKTRARQDALAKKAGHVDSRIYHEFQNQLGGGSYFLGY 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                                    +   SI+  IV +G  V        +EV+ D+TPF
Sbjct: 475 -----------------------TESETESIISGIVSEGAAVPALTGPADIEVILDKTPF 511

Query: 521 YAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           +AE GGQL D G      G  ++I DVQ   +G+ VH   +  G L    + V  I    
Sbjct: 512 WAEMGGQLADHGTIRTTGGAIVEIDDVQAPIKGLTVHRGRLVEGTLALGETAVAKICTDR 571

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  ++  H+ATH++H  L   +G   +Q GS  +P  LRFD  H+  +    L  +E  V
Sbjct: 572 RLAIARAHTATHMVHKGLHEFIGEGATQAGSENSPSRLRFDFRHTSAVPVDVLGELEARV 631

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  +A NL V   IMN +DA A GA AL G KY + VRVV++    G   S  LC GTHV
Sbjct: 632 NQQLANNLTVTDTIMNIDDAKAMGAMALFGEKYGNEVRVVNI----GDGWSVELCAGTHV 687

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +TG I  + ++ E+SI +G+RRI+A+ G  A +H   +   +  L   +      + G+
Sbjct: 688 PTTGHIGRVALLGEASIGSGVRRIDALVGDGAYAHQAKEHALVSQLTGLIGGKSDELPGK 747

Query: 760 VEEIWEEYRKLQLIHAKR----------KLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           VE + ++ +  +   AK           +L   VE L       VN          ++ L
Sbjct: 748 VESLLKKLKDAEKQIAKLGEAQMLARAAELATQVERLGAFDAVIVNLG----EAASAEGL 803

Query: 810 KSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +S++  ++ ++      ++  +G+  +K   V+            A  L RL+++ L GG
Sbjct: 804 RSLVLDVRARLGEANPVVVAGIGVISDKPQVVVATNEAARGAGAKAGALVRLASQTLQGG 863

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGGR  +AQ GG N     +A+  V   L+
Sbjct: 864 -GGGRDDVAQGGGQNPAAVPEAVEVVKQALR 893


>gi|224282910|ref|ZP_03646232.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140069|ref|ZP_07802262.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132579|gb|EFR50196.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 892

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/922 (35%), Positives = 497/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ +
Sbjct: 1   MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQPEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TLD G+ +LD  ++   K  D +++GD AF L+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                     V  I+Q+G+  V    +   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +  +ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T  M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   G
Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDVVRVVSIGEDGW---SRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCH---KIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L        A V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+S++ K  V +   E        A DL R ++K+LGGGGG G+P
Sbjct: 807 RAQLGEDAPVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKMLGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG + ++ D+A+  + +
Sbjct: 866 DFAQGGGSDASRIDEALKALEA 887


>gi|15645855|ref|NP_208033.1| alanyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|3024653|sp|P56452|SYA_HELPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2314404|gb|AAD08285.1| alanyl-tRNA synthetase (alaS) [Helicobacter pylori 26695]
          Length = 847

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/898 (35%), Positives = 480/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+E F +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVVKECFEEEEHFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A  D+  F   ++
Sbjct: 359 SGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACADMQGFELCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + ++       + + +A   Q+V V+ ++TPFYAE GG +GD G    D   + I
Sbjct: 458 -----AKVLGFFDSDFKEITDANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNGEVAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERFEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGKDIENLQAALNLAKN 839


>gi|308064021|gb|ADO05908.1| alanyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 847

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/898 (35%), Positives = 479/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLERKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 456 ---CCAKALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED+VN  I ++L    + M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLNSQVQHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKNKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGRDIENLQAALNLAKN 839


>gi|71022301|ref|XP_761380.1| hypothetical protein UM05233.1 [Ustilago maydis 521]
 gi|46097613|gb|EAK82846.1| hypothetical protein UM05233.1 [Ustilago maydis 521]
          Length = 990

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/975 (32%), Positives = 470/975 (48%), Gaps = 104/975 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + +R TF  +FQ+  H  +PSSS IP +DPTL+F N+GM  +K IF G   P       
Sbjct: 24  ATKVRDTFTGYFQERKHTFVPSSSTIPYDDPTLLFANAGMNQYKPIFLGIADPNSSFGSM 83

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI++AW+LLTK +
Sbjct: 84  KRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEMAWELLTKVY 143

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++ D         EA  LW K+ G+  D I+     DNFW M  TGPCG
Sbjct: 144 GLPKDRLYVTYFEGDAKQGLEPDLEARDLWLKV-GVDEDHILTGDAKDNFWEMGATGPCG 202

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           +++    IEIWN VFMQF +++      LP   IDTGMG 
Sbjct: 203 PCSEIHYDRIGG-RNAADLVNKDDPNVIEIWNNVFMQFNREDDGSLRPLPAKHIDTGMGF 261

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ ++LQ+K +NYD D+F  +    +Q+TG +                 +RV+ DH+R+
Sbjct: 262 ERLVSILQDKPSNYDTDVFTPIFNKIQQLTGARAYTGKLGAEDKDGIDTAYRVVADHVRT 321

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P  +GRGYVLRRI+RR   Y R             L+P L  +MG  +PE
Sbjct: 322 LTFAISDGGVPDRDGRGYVLRRILRRGTRYVRKYFQVPIGSFFSQLVPTLVEQMGHFFPE 381

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLP 397
           + +    ++  L  E+  F +TLDRG  L +   +      ++ L+G+  +KLYDT G P
Sbjct: 382 ITKKVDDVKAILDEEEASFARTLDRGERLFEEYAAKAKAAGNKQLSGNDVWKLYDTFGFP 441

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +   +GL G++   F  A  E +  ++A                     G T+ 
Sbjct: 442 VDLTLIMAEEQGL-GVNEKEFEAAQAESKEISKAGGKK-----------------GETEA 483

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVE---V 513
           + +D+       K+      Q       N V + VKAI Q    V+     G + +   +
Sbjct: 484 VKFDVHDLGHLEKDSSVPKTQDDFKYGVNTVKASVKAIYQDHAFVDNTSKIGDRAKNFGI 543

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T  YAE+GGQ  DTG  + DG    + +  +   G  +H   ++ G L     +V+
Sbjct: 544 LLDRTCLYAESGGQQADTGSIVIDGKTEFVVEDAQVFSGYVLHIGHLKHGELGLNDEVVV 603

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           + D   R  L  NH+ATH+L+  L  +LG H+ Q GS + P  LRFD +H + +   ELK
Sbjct: 604 SYDQSRRGPLQSNHTATHILNFGLREVLGDHIDQKGSLVAPTKLRFDFSHKQGVNVQELK 663

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
            IED   D I +++ V ++ M  + A    G  A+ G  Y + VRVV++EY+   +    
Sbjct: 664 KIEDISIDWIKRDVGVYSKEMPLDTAQKIPGLRAVFGEAYPNPVRVVTLEYDLDTIADDI 723

Query: 692 ----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR----------- 730
                       CGGTHV+ TGEI    I  ES I  GIRRI A+TG             
Sbjct: 724 ENTKWRGTSVEFCGGTHVAKTGEIGEFVITEESGIAKGIRRIIAVTGNEAAAVTKVADDA 783

Query: 731 --------ARSHLMGQDEKLKSLASFL---------KVSQGNVVGRVEEIWEEYRKLQLI 773
                   A      +D  LK+  + L         K S       + +  +   K +  
Sbjct: 784 EVRLAEIDAIQEQSAKDAALKAFGTQLAQLDMSVVRKASLNETFAAIRKKLDSGLKAKDK 843

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ-----------S 822
              + +   VE+    K     F+       + K L+S ++ ++K  +           +
Sbjct: 844 ADTKLVVSAVEEHFKTKPNSTCFIHKFDVGSNMKALQSALNTVKKMDKTAYLFSQELDVN 903

Query: 823 GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP- 880
           G+ +  G + + K   +  V++ D     NA +    SA+ + GG GGG+   AQ  G  
Sbjct: 904 GVKVADGNAIKAKVVHVAYVSKHDQAKGLNAKEWIETSAQHV-GGKGGGKTDSAQGIGEM 962

Query: 881 NGNKADQAIAGVASF 895
            G   + A+     F
Sbjct: 963 GGQALEDAVEAAKRF 977


>gi|261838564|gb|ACX98330.1| alanyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 847

 Score =  759 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/898 (35%), Positives = 477/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK++FTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDVFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYRVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNAFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
               ++  +       + + +A   Q+  V+ ++TPFYAE GG +GD G    D   + I
Sbjct: 456 ---CLAKALGFFDSDFKEITKANPNQEAWVLLEKTPFYAEGGGAIGDRGTLFKDNEEVAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL   L  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSTLREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHEKLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQILGGKGGGRG--------DFASAGGKDIEKLQAALNLAKN 839


>gi|268561116|ref|XP_002646367.1| C. briggsae CBR-ARS-2 protein [Caenorhabditis briggsae]
 gi|187029911|emb|CAP31121.1| CBR-AARS-2 protein [Caenorhabditis briggsae AF16]
          Length = 967

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/973 (29%), Positives = 466/973 (47%), Gaps = 96/973 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S +R+TF+EFF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P     
Sbjct: 5   TASEVRSTFIEFFREKKNHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLA 64

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT 
Sbjct: 65  KLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY++V+  DE        EA ++W+ + G+  ++I+     DNFW M + GP
Sbjct: 125 VYGIPAERLYVSVFGGDEANGVPADSEAREIWRSV-GVPEERILNFGMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   ID G+
Sbjct: 184 CGPCSEIHYDRI-GNRDASHLVNADDPMVVEIWNLVFIQFNREEGGALKSLPAKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+  V+Q+KT+NYD D+F+ + +   + +G++    +          + +RV+ DH+
Sbjct: 243 GLERLIAVMQDKTSNYDTDIFQPIFEEITKKSGVRAYTGHIGDEDKDGVDMAYRVVADHI 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P + + +G  +P
Sbjct: 303 RTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFAALVPVVISILGDTFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397
           EL +  + + + +  E+++F KTL RG VL    +  L    +   GD+A++LYDT+G P
Sbjct: 363 ELKRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDIAWRLYDTYGFP 422

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ Q +   +GL+ +D  +F  A    R +A   S        + +   +   +   + 
Sbjct: 423 ADLTQLMAEEKGLS-VDETAFEDA----RKKAIETSSAGAGKFRDTLDLDV---HALAEL 474

Query: 458 IGYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +       K       +    +         + AI + G+ V++ V+G++  V+ D
Sbjct: 475 QQKGIPTTDDSPKYAYSFTGEGSEAVYKFEPCVGKILAIRRDGKFVDQLVAGEEGAVLLD 534

Query: 517 QTPFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +T FYAE GGQ+ D G     G       +++ Q    G ++       G      ++  
Sbjct: 535 RTNFYAEQGGQIYDVGVLSKSGDESNEFNVSNCQ--VRGGYIVLVGSAEGSFSVGDNVNQ 592

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   ++ +  NH+ TH+L++AL  +L     Q GS + PD +RFD T+   +T  ++K
Sbjct: 593 RFDEDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVAPDRMRFDFTNKAAMTPEQVK 651

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----------- 681
             E+    +I     V  +    EDA   +G  A+    Y D VRVV+V           
Sbjct: 652 QAEEYAQQLINAKGQVYAKNSPLEDAKKINGLRAMFDETYPDPVRVVAVGTPVEQLLQNP 711

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQ 738
           E E G   +   CGGTH+ +   I  + I SE +I  GIRRI A+TG    RA +     
Sbjct: 712 EAEAGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEADRAIARAERL 771

Query: 739 DEKLKSLASFLKVSQ--------GNVVGRVEEIWEE--------YRKLQLIHAKRKLQLN 782
           + +L   +   K  +          +  +++EI +E        +RK  L    + +Q +
Sbjct: 772 EARLVDESKHAKNQEILSNKDKFKELQKKIQEIVDEANGAQLPYWRKDALRKKAKDVQKD 831

Query: 783 VEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSG 823
           ++  S  + A V                     +    S  +SK + + +  L+      
Sbjct: 832 MDGYSKAQQAAVAEKVLGEAKELAAAAEQPPVLVHVFASNANSKAIDNALKLLKDT--KA 889

Query: 824 IIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           ++         K   L  V + L+ +   A +       +L GG GGG+   AQ  G N 
Sbjct: 890 VMAFSVNEDTGKVLCLAKVDKSLVSNGLKANEWVNEVCTIL-GGKGGGKEANAQLTGENV 948

Query: 883 NKADQAIAGVASF 895
           +K D A+     F
Sbjct: 949 DKLDDAVELAQKF 961


>gi|317013025|gb|ADU83633.1| alanyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 847

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/898 (35%), Positives = 482/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF+  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQVLLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFVPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K  + +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKETVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L+HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECP----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 458 -----AKALGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VSDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H+K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGKDIENLQAALNLAKN 839


>gi|293192679|ref|ZP_06609633.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292820186|gb|EFF79183.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 902

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/934 (33%), Positives = 491/934 (52%), Gaps = 72/934 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IRT +L++F+K GHE+ PS SL+   +P+++FT +GMVPF    TG E   +   
Sbjct: 1   MRTSEIRTRWLDYFEKQGHEIRPSVSLVSP-EPSILFTIAGMVPFIPYITGVEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
            +VQKC+R     ND+DNVG+T RH TFF+M GNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           ++ LD  R ++T++D+D+EAF +  K  G+    I+R+   +NFW   + GP GPC+E  
Sbjct: 116 KYGLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMG 229
           +D+G        G + +  G+RY+E+WNLVF Q+ +             L K +IDTG G
Sbjct: 176 YDRGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMRGEGSGKDYPLLGELDKKAIDTGAG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDH 278
           LER+A V+Q+K N Y+ID    +I+A+ Q++G +Y             ++ V  RV+ DH
Sbjct: 236 LERLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
           +RSS  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL A    M ++YP
Sbjct: 296 VRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASYP 355

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHG 395
           EL      I E   +E++ F +TL  G  +LD  ++   + +   +++G  AF L+DT+G
Sbjct: 356 ELEINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTYG 415

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK--YG 453
            P+D+  ++   +G++ +D   F   + EQ+ RARA +    +G T+   F   EK   G
Sbjct: 416 FPIDLTLEMAAEQGVS-VDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMGG 474

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            + F+GY                             + V+A++  G     A +  +VEV
Sbjct: 475 GSTFLGY-----------------------TEQAAEATVEALLVDGVAAPAASAPAEVEV 511

Query: 514 VFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+TPFYAE GGQL D G   +  G  +++ DVQ    G+ VH   +  G +       
Sbjct: 512 ILDRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKAY 571

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID + R  ++  H+ATH+++  L  ++   ++Q GS  +P  LRFD  H   +  ++L
Sbjct: 572 AEIDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQL 631

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE  VN+ +A++L V T +M+ + A  +GA AL G KY   VRVV++    G      
Sbjct: 632 SDIEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTI----GDGFDRE 687

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGGTHV +TG I  + ++SE S+ +G+RRI+A+ G  A      +   +  L+  +   
Sbjct: 688 LCGGTHVPTTGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGGR 747

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEV-DS 806
              +  R+E +  + R+ +    K +    +        S   I  V  ++  + E+  +
Sbjct: 748 ADELPERIESLLAKLRESEKELEKVRTAQALSQGADLAASAKAIGPVTVVASAVGEMPSA 807

Query: 807 KELKSVMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863
             L+++   ++ ++ +    ++ +G     K S+++   E   +    A  L R   K +
Sbjct: 808 DALRTLALDVRDRLGNDRGTVVALGGVVGGKPSLVVATNEAAREASVKAGALVRAVGKHM 867

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGGGG GR  +AQ GG        AI  +   ++
Sbjct: 868 GGGGG-GRDDIAQGGGTKPEGLADAIDAIRKEIE 900


>gi|310287353|ref|YP_003938611.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251289|gb|ADO53037.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 892

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/922 (35%), Positives = 496/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ +
Sbjct: 1   MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TLD G+ +LD  ++   K  D +++GD AF L+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                     V  I+Q+G+  V    +   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +  +ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTEVSASIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T  M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   G
Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCH---KIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L        A V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+S++ K  V +   E        A DL R ++K+LGGGGG G+P
Sbjct: 807 RAQLGEDASVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKMLGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG + +  D+A+  + +
Sbjct: 866 DFAQGGGSDASCIDEALKALEA 887


>gi|311064194|ref|YP_003970919.1| alanyl-tRNA synthetase AlaS [Bifidobacterium bifidum PRL2010]
 gi|310866513|gb|ADP35882.1| AlaS Alanyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 892

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/922 (35%), Positives = 497/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P ++ +
Sbjct: 1   MRTSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T Y +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTYTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPEY-GKDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+EQ++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG TEP++ HLLP     M ++YPEL +    + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TLD G+ +LD  ++   K  D +++GD AF L+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMSEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524
                                     V  I+Q+G+  V    +   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +  +ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNDRL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T  M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   G
Sbjct: 630 RDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCH---KIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L        A V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTVMDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+S++ K  V +   E        A DL R ++K+LGGGGG G+P
Sbjct: 807 RAQLGEDAPVVVALAGVSEDDKPMVAVATNEVARKNGIKAGDLVRGASKMLGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG + ++ D+A+  + +
Sbjct: 866 DFAQGGGSDASRIDEALKALEA 887


>gi|320040301|gb|EFW22234.1| alanyl-tRNA synthetase [Coccidioides posadasii str. Silveira]
          Length = 964

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/967 (30%), Positives = 476/967 (49%), Gaps = 98/967 (10%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
            +R TFL+FF+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       + 
Sbjct: 19  KVRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKR 78

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L
Sbjct: 79  AHNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGL 138

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY+T ++ ++        E   LW  + G+  D I+     DNFW M + GPCGPC
Sbjct: 139 EPDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPC 197

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SE+ +D+           + +    +EIWN VF+Q+ ++++     LP   +DTGMG ER
Sbjct: 198 SEVHYDRIGGRNAAH-LVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGYER 256

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
           + +VLQ+K +NYD D+F  L  A  ++TG++                 +RV+ DH+R+ +
Sbjct: 257 LVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRTLT 316

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
           F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ 
Sbjct: 317 FAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPEIK 376

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLD 399
           + +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D
Sbjct: 377 KKQTDVMEILDEEEISFAKTLDRGERQFEIYAQQAKDSGSNKLHGADVWRLYDTFGFPVD 436

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   RGL+ ID + F +A    R +A+  S G     ++ +  S+ +         
Sbjct: 437 LTQLMAEERGLS-IDNVEFEEA----RLKAKEASKGQAKAASDLLKLSVHD--------- 482

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
                    +++D+              + S + A+    E V+       G ++ ++ D
Sbjct: 483 ------LSKLEKDKVPKTNDDAKFGRGNILSQIVAVYHDKEFVDSTSGIPEGDQIGIILD 536

Query: 517 QTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  DTG  I DG   L + +VQ    G   H   ++ G L    S++   
Sbjct: 537 KTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMY-GGYVFHTGFIKYGNLSVGDSVISEY 595

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ TH+L+ AL  +LG+ + Q GS +  + LRFD +H   ++ ++L+ I
Sbjct: 596 DELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDLEKI 655

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE---------- 684
           E+   + I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E          
Sbjct: 656 EEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKDVKD 715

Query: 685 -DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------- 736
                 S   CGGTHV  TG+I  L I+ E  I  GIRRI A+TG+ A            
Sbjct: 716 PRWKGVSIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDAHEVQRIAKEFGD 775

Query: 737 ------------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIH 774
                        ++++ K + + L     + V +           +++ E  + LQ   
Sbjct: 776 RLNRFEKMEIGPKKEQEAKLIQADLNQLSISAVEKARFREQFARIHKQVLEAQKALQKQE 835

Query: 775 AKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            K  L          +  D +  +  + +  ++K +   ++  + K++   I +     E
Sbjct: 836 IKAALDAINSHFEKPENKDSSHLIVRLPTSANAKAISESINHAKSKLKDKSIYVFAADAE 895

Query: 834 -KKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
             + +    V+  L     +A + + + + ++ GG  GG+   +   G   ++ D+AI  
Sbjct: 896 QGRVAHGCYVSSSLSAQGASASNWSGVVSGIV-GGKAGGKAPTSIGNGTEVDRVDEAIEA 954

Query: 892 VASFLKK 898
              +L++
Sbjct: 955 ATKYLEQ 961


>gi|19114552|ref|NP_593640.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3183171|sp|O13914|SYA_SCHPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2330773|emb|CAB11162.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 959

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/964 (31%), Positives = 473/964 (49%), Gaps = 91/964 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
            + IR TFL++F+ +GH ++PSSS+IP +DPTL+F N+GM  FK IF G   P       
Sbjct: 12  ANEIRRTFLKYFEDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKL 71

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI +AWDLLT  +
Sbjct: 72  KRACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTNVY 131

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T +        + D EA +LW  I G+   ++I  +  DNFW M + GPCG
Sbjct: 132 GLKKDQLYVTYFGGHEESGLEPDLEARQLWLDI-GIDESRVIPGSLKDNFWEMGDQGPCG 190

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +EIWN+VF+QF ++       LP   +DTGMG 
Sbjct: 191 PCSEIHYDRI-GNRTVPELVNMDDPNVLEIWNIVFIQFNREKDGSLRPLPNRHVDTGMGF 249

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +V+Q KT+NYD D+F  +    +++T  +                 +RV+ DH+R+
Sbjct: 250 ERLVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYRVVADHVRT 309

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P NEGRGYVLRRI+RR   Y R   G         L   +  +MG  +PE
Sbjct: 310 LTFAISDGGVPNNEGRGYVLRRILRRGARYVRKKFGVPIGNFFSRLSLTVVEQMGDFFPE 369

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397
           L +    + E L  E+E F +TLDRG  + +   +   K   + L G+  ++LY+T+G P
Sbjct: 370 LKRKVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTPSKTLQGNDVWRLYETYGFP 429

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+   +    G+  ID   F  A    +  ++  S G  SG    +             
Sbjct: 430 VDLTHLMAEEAGIK-IDEPGFEAAQARSKEISKQASKGGSSGDDLLVL------------ 476

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEVV 514
              D+       K D            +  + S++K I  +G   +  E   SG+++ ++
Sbjct: 477 ---DVHALGALSKMDDIPETDDVFKHNSVSLKSVIKGIYHKGGFQKSTEGFNSGEQLGLL 533

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ  DTG  + DG+   ++T+VQ    G  +H   +E G L    S+V 
Sbjct: 534 LDRTNFYAEQGGQEYDTGHIVIDGVADFRVTNVQ-VYAGYVLHTGFLEYGNLTVNDSVVC 592

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  L  NH+ TH+L+ AL   LG  + Q GS ++ + LRFD ++   I   +L 
Sbjct: 593 EYDEIRRWHLMNNHTVTHILNLALRNTLGDGIDQRGSLVSQEKLRFDFSYKSSIPIDKLL 652

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
            +E+  N++I  NL V ++ +    A   +G  A+ G  Y D VRVV +  +        
Sbjct: 653 LVENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDIDTLLQEP 712

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
              D   +S   CGGTH   +GEI    I+ E+ I  GIRRI A+T   A          
Sbjct: 713 KKPDWTKYSIEFCGGTHCDKSGEIKDFVILEENGIAKGIRRIVAVTSTEANRVSRLANEF 772

Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRK--LQLIH 774
                          ++ +LK ++  L       V +  +  R+ +I ++ ++    +  
Sbjct: 773 DARIAKLEKMPFSPAKEAELKKISVDLSKLVVAAVRKHAMKERIAKITKQVQEHVKAINA 832

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           A++K  +NV      +  D++F+   +    + K L   +   +K ++   I L+  S +
Sbjct: 833 AEQKEVVNVVTEYFKENPDMSFVVAKVPISANPKALSFALTYAKKNLKDKSIYLLA-SDD 891

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            K +   +V+ + + +    + ++     + GG  GG+    Q  G      D A+    
Sbjct: 892 TKVAHACLVSPEAMKKLTPQEWSQKVCHSI-GGRSGGKGDTCQGVGDKPLSIDVAVEEAI 950

Query: 894 SFLK 897
            F +
Sbjct: 951 EFFQ 954


>gi|317182490|dbj|BAJ60274.1| alanyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 847

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/898 (35%), Positives = 484/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPNIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVLKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 456 ---CCTKALGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGV- 791

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           +++  + NA   A   A++L       G          A +GG +  K   A++   +
Sbjct: 792 KNVPIKANA--WANEVAQILGGKGGGRG--------DFASAGGKDIEKLQAALSLAKN 839


>gi|317177983|dbj|BAJ55772.1| alanyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 847

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/898 (35%), Positives = 478/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCG CSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGSCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L + K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKEFKEMVLKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G+  +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVR-VDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 458 -----AKALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----ETSIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        + ++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEESKELKNAKIALKNN--DVMAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +  K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQILGGKGGGRG--------DFASAGGKDIEKLQAALNLAKN 839


>gi|213692473|ref|YP_002323059.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523934|gb|ACJ52681.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458618|dbj|BAJ69239.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 892

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/926 (34%), Positives = 495/926 (53%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTFTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPEY-GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  LLP     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G+ +LD  +    K  D +++G  AF L+DT+G P+++  ++  
Sbjct: 354 EAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   G
Sbjct: 630 RDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNAL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDAL 816
             + ++     A   + +L  +V  L          +   +  V        L+  +  +
Sbjct: 747 LAKLKESDRRLASMYESQLAASVPALVADTKDSAAPVKVAVKNVGHFGAVDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGGG G+P
Sbjct: 807 RAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
             AQ GG + +K  +A+  +    +K
Sbjct: 866 DFAQGGGVDASKIGEALEALKHEAQK 891


>gi|269956481|ref|YP_003326270.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305162|gb|ACZ30712.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 895

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/907 (35%), Positives = 479/907 (52%), Gaps = 62/907 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F+   H ++PS+SL+   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTADIRQRWLDYFESKDHAIVPSTSLVSP-DPSILFTIAGMVPFIPYILGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R G    D++NVGRT RH TFF+M GNFSFG YFK  AI +AW+LLT +    
Sbjct: 60  ASVQKCIRTG----DIENVGRTTRHGTFFQMNGNFSFGDYFKTGAIDMAWELLTTDQGQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL++T++DED E++    +  GL    I+R+   +NFW   + GP GPC+E  
Sbjct: 116 GYGFDGDRLWVTLWDEDTESYDALTQGIGLDPKHIVRLPRQENFWDTGQPGPAGPCAEWH 175

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMG 229
           +D+G        G + +  G+RY+EIWNLVF QF +             L + +IDTG G
Sbjct: 176 YDRGPAYGPDAVGGNVDPGGDRYLEIWNLVFDQFVRGEGTGKDYPLLGELERKAIDTGAG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ K N ++ID    +I+  EQ+TG KY  E  + V  RVI DH+RS   +I 
Sbjct: 236 LERIAFLLQGKENMFEIDETYPVIERVEQLTGKKYGAEAEDDVRMRVIADHVRSGLMVIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRRI+RRA+   RLLGY    +  LLP     M ++YPEL      I
Sbjct: 296 DGVRPSNEGRGYVLRRILRRAVRSMRLLGYDAEALPELLPVSKDAMKASYPELETGFAKI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
            E    E+E F +TL  G  +LD  ++   K  +  L G  AF L+DT+G P+D+  ++ 
Sbjct: 356 AEVAYGEEEAFRRTLSAGTTILDVAVAKAKKSGVQTLGGAEAFALHDTYGFPIDLTLEMA 415

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLL 463
             +G+A +D  +F   + EQ+ RARA +L   +G  +   +   +       +F+GY  L
Sbjct: 416 AEQGVA-VDEQAFRSLMAEQKQRARADALAKKTGHADLRAYESIVSALSAPVEFLGYTDL 474

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             +                         V  ++  G     A +   VEVV D+TPFYAE
Sbjct: 475 DSAV-----------------------TVVGLLVDGVPAPVATAPADVEVVLDRTPFYAE 511

Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + DG   +++ DVQ+  +G+ VH   +  G +        TID + R  
Sbjct: 512 AGGQLADQGTIVLDGGATVEVDDVQRPIKGLNVHRGRLVEGTITLGDPGTATIDVERRVA 571

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +S  HSATH++H AL  ++G   +Q GS   P  +RFD      + ++ L  IE+ VN  
Sbjct: 572 ISRAHSATHMIHKALHELVGDDRTQAGSENAPSRVRFDFRSPSAVPASALGEIEERVNLR 631

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           + +NL V   +M    A   GA AL G KY D VRVVS+    GG  S  LCGGTHV  +
Sbjct: 632 LQENLEVTDELMPIATARDLGAMALFGEKYGDIVRVVSI----GGDWSRELCGGTHVRLS 687

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           GEI  + ++ E+SI +G+RR++A+ G+ A      +   +  L   L      +  RV  
Sbjct: 688 GEIGRVALLGEASIGSGVRRVDALVGEGAYGFQAKEHALVGQLTGLLGARPEELTDRVGS 747

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDL--SCHKIADVNFMSHIISEV-DSKELKSVMDAL 816
           +  + ++ +   A   K +L      L      +  V  +++   +V  + +L++++  +
Sbjct: 748 LLSKLKETEKELAALRKGQLLAAAGRLASEASDVDGVRVVTYDAGDVASADDLRALVLDV 807

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPH 873
           + ++     +LV +      S L+VV  +   R     A D  + +A VLGGGGG G+P 
Sbjct: 808 RGRLGDAAPVLVAVGGTAGGSPLVVVATNAGAREAGLRAGDFVKAAAGVLGGGGG-GKPD 866

Query: 874 MAQSGGP 880
           +AQ GG 
Sbjct: 867 LAQGGGR 873


>gi|170092939|ref|XP_001877691.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647550|gb|EDR11794.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 955

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/968 (31%), Positives = 482/968 (49%), Gaps = 97/968 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + + +R  F  FF+   H  +PSS  IP +DPTL+F N+GM  +K+IF G   P      
Sbjct: 11  SSARVREEFFNFFRSKNHTFVPSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSDMSR 70

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLT  
Sbjct: 71  LKRAFNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTDV 130

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T ++ D         EA + W    G+  D I+     DNFW M  TGPC
Sbjct: 131 YKLPKDRLYVTYFEGDPNNGLEPDLEAKQYWLD-QGVDEDHILPGNAKDNFWEMGATGPC 189

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI FD+           +++    +EIWN VF+QF +++      LP   +DTGMG
Sbjct: 190 GPCTEIHFDRVGGRNAAH-LVNQDDPDVLEIWNNVFIQFNREDNGSLKPLPSKHVDTGMG 248

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLR 280
            ER+ +++Q+K +NYD D+F  +     ++TG++ YEG    +        +RV+ DH+R
Sbjct: 249 FERLVSIVQDKRSNYDTDVFLPIFDKIRELTGVRPYEGRFDADDVDGIDTAYRVVADHIR 308

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAYP 338
           + +F ++DG +P N GRGYVLRRI+RR   YAR  LG         LLP +   MG+ +P
Sbjct: 309 TLTFALSDGGIPNNVGRGYVLRRILRRGARYARKKLGVKIGCFFSSLLPVVVETMGAVFP 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           E+ +    I+E L  E+E F +TLDRG  L D   +   +   + LNG   ++LYDT G 
Sbjct: 369 EITRKVDDIKEILDEEEESFSRTLDRGEKLFDQFATRAKEQGLKELNGRDVWRLYDTFGF 428

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL G++   F +A    +  ++A S  +G                 T 
Sbjct: 429 PVDLTRLMAEELGL-GVNDQEFEEAQAWSKEASKASSKQVG-----------------TS 470

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513
            +  D+   +   K+                + ++VKAI  +    +  +    G    +
Sbjct: 471 IVKLDVHDTAALEKDTDIPKTDDSAKFNLGNIRALVKAIFYEKSFPQSTDIMPEGATFGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAEAGGQ  DTG  + DG+   ++T+VQ    G  +H   ++ G L     ++
Sbjct: 531 ILDKTSFYAEAGGQEYDTGNIVIDGVADFEVTNVQ-SYNGYVLHTGHLKYGQLAVGKEVI 589

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + D   R  L  NH+ATH+L+  L  +LG H+ Q GS + P  LRFD +H   I+ +EL
Sbjct: 590 SSYDELRRWPLRNNHTATHILNFCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQISHSEL 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGV--- 688
             IE    D I +N+ V ++ +  E A    G  A+ G  Y D VRVV++EY+   +   
Sbjct: 650 SRIEATSVDWIKRNVKVFSKDLELETASKIPGLRAVFGESYPDPVRVVTLEYDVDEIAKD 709

Query: 689 --------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736
                    S   CGGTHV+ TG+I    I  ES I  GIRRI AITG  A S       
Sbjct: 710 IENPKWRRTSVEFCGGTHVARTGDIKDFIITEESGIAKGIRRIVAITGHEAHSAARHALL 769

Query: 737 --------------GQDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQL 772
                          +D  LK+L+  L  +  +V+ + E           + ++ ++ + 
Sbjct: 770 LQGRLEQIDSLTGKNKDAALKALSIELGQADISVLKKAELRDRLAVIRKAVDKQVKEREA 829

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           +  +  +       + ++ A+    S  +   ++K L++V+   +K  +   + L  +  
Sbjct: 830 VVNREAIDTIQRHFNDNEKAETYIASLNVDG-NAKILQAVISQGRKLQK--AVYLFSVDP 886

Query: 833 EKK-ASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E    + +  V  +      +A   A     +L GG  GG+   AQ  G +G++ D+A+ 
Sbjct: 887 ESNTVAHVNYVPPEFKTKGADARTWASKVVGIL-GGKAGGKEDSAQGVGSDGHRLDEALV 945

Query: 891 GVASFLKK 898
               ++ +
Sbjct: 946 AAQLYVDE 953


>gi|189501991|ref|YP_001957708.1| alanyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497432|gb|ACE05979.1| hypothetical protein Aasi_0578 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 879

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/929 (34%), Positives = 480/929 (51%), Gaps = 84/929 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S+IR  F++FF++  H  + ++ ++   DPTL+FTN+GM  FK+ F  Q++  YQ 
Sbjct: 1   MLCSSNIRQKFVDFFKQKDHHHVKAAPIVNKEDPTLLFTNAGMNQFKDFFLNQQEAPYQR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             + Q C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFKE AI  AW+LLT+ + L
Sbjct: 61  AISTQPCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGEYFKEEAIACAWELLTEVYKL 120

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            Q RLY+TV+  DE        E+   W+K   +S D+I+     DNFW M +TGPCGPC
Sbjct: 121 PQERLYVTVFQGDEEESLELDQESLNTWEKY--ISRDRILYGNKKDNFWEMGDTGPCGPC 178

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    +      G    +    + IEIWNLVF+Q+ +    +   LP   +DTGM
Sbjct: 179 SEIHVDIRTEEEIQQQAGKELVNTGHPQVIEIWNLVFIQYNRLASGQLMELPAKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+  VLQ K++ YD D+F  LI    +++   Y  +N V+   RV+ DH+R+ +F I
Sbjct: 239 GFERLTMVLQGKSSTYDTDIFVPLIHNIMRLSHKTYGKDNKVDIAMRVVADHIRAITFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N   GYV+RRI+RRA+ Y    LG+  P M  L+  L  +  + YP++ Q + 
Sbjct: 299 ADGQLPSNTQAGYVVRRILRRAVRYGYTNLGFETPFMYQLVSILAQQFKNVYPQIKQQQS 358

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQD 403
            IE+ ++SE+E F KTL  GL  L+ +   L     ++++G  AF+LYDT+G P D+ + 
Sbjct: 359 YIEQVIKSEEESFFKTLAVGLHRLEHISETLNINGQQVIDGPTAFELYDTYGFPPDLTRL 418

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   +GL  +D   F +AL+ QR R++           E+  + +  K   + FIGYD L
Sbjct: 419 IAQEKGLE-VDEEGFQKALQNQRIRSQQA------AVLEQGDWHIVVKDVDSVFIGYDQL 471

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                + + R                     I Q+GE +         ++V DQTPFY E
Sbjct: 472 ELIAKVIQYRS--------------------IYQKGEEI--------YQIVLDQTPFYPE 503

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+GDTG  I     + + D +K+ E I  +   +         ++   +D + R  +
Sbjct: 504 GGGQVGDTGTLIVGEQIIAVFDTKKEYERIIHYTHEL---PHDLHATVQAVVDVKKRNLI 560

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NHSATHLLH AL  +LGSH+ Q GS +    LRFD  H   ++  +++ IE  VN  I
Sbjct: 561 ASNHSATHLLHAALRQVLGSHIEQKGSLVNEKLLRFDFPHYTKVSPEQIREIEHIVNQKI 620

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             N+ +   R M  EDA + G  AL G KY + VRV++ +       S  LCGGTH S+T
Sbjct: 621 RANINLHEVRSMLLEDAKSMGVTALFGEKYGEYVRVITFDPY----FSKELCGGTHASAT 676

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G++    I +E+ I AG RRIEAIT   A + ++ Q   L      LK    ++V  +  
Sbjct: 677 GKLGFFKITAETGIAAGTRRIEAITADAAENFIIEQLSILNQATEALK-KPNDLVKSIYH 735

Query: 763 IWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQ 817
           + EE   L+      + Q   +V D     I  V  +  +I EV   + + LK V  + +
Sbjct: 736 LLEEKANLEKKILSYQAQEVRSVIDNLYQHIKQVQEIQVLIEEVKVPNVEALKQVALSFR 795

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVL------GGGGGG 869
              +    + +    +++  + + ++E+L+ +   NA  + +  A ++            
Sbjct: 796 -TNKGPFFLTLTSIIDQQPHIALFISEELIHKTQMNANIIIKELATLIQGGGGGQ----- 849

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             P  A + G + +  +Q +      L+K
Sbjct: 850 --PFFATAKGNDASGINQVLVTARHILEK 876


>gi|217034055|ref|ZP_03439476.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10]
 gi|216943450|gb|EEC22904.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10]
          Length = 847

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/898 (35%), Positives = 478/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G+   D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVRM-DMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y   +F GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + EA   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 458 -----AKALGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED+VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    I+ ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRILKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E +  +   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RIILACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG    K   A+    +
Sbjct: 793 NAP---IKANAWANEVAQILGGKGGGRG--------DFASAGGKGIEKLQAALNLAKN 839


>gi|297380421|gb|ADI35308.1| alanyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 847

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/898 (35%), Positives = 476/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G+  +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGV-CVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + +A   Q+V V+ ++TPFYAE GG +GD G    D     +
Sbjct: 458 -----AKALGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDDEEAAM 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNTQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+  + LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E   ++   V 
Sbjct: 737 VDLPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-LITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGKDIENLQAALNLAKN 839


>gi|297626345|ref|YP_003688108.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922110|emb|CBL56678.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 895

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/924 (34%), Positives = 465/924 (50%), Gaps = 70/924 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF   GH  +PS+SL+  NDPTL+F N+GMVPFK    G+    ++  
Sbjct: 1   MKAAEIGRRFVDFFVSKGHTEVPSASLL-YNDPTLLFVNAGMVPFKPYLMGELPAPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF--- 118
           T++QKCVR      D++ VG+T RH TFF+MLGNFSFG YFK+ AI+ AW+L+T      
Sbjct: 60  TSIQKCVRT----LDIEEVGKTTRHGTFFQMLGNFSFGDYFKKEAIEFAWELVTGPLAEG 115

Query: 119 --DLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA   W  + G+  + I      DN+W M   G
Sbjct: 116 RLGFDPNMVWVTVLGPGFHPDYPEGDTEARDTWLSL-GVPPEHIQGRGLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPK 221
           P GPCSEI+ D+G    G   G   + +R++EIWNLVF   E    + +        +  
Sbjct: 175 PGGPCSEIYIDRGPKY-GAEGGPEADEDRFLEIWNLVFETEELSTVRSKEDFDIAGPMKT 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHL 279
            +IDTG GLER+A ++Q   N Y+ D    +I+ +  + G +Y  +  + V  RV+ DH+
Sbjct: 234 RNIDTGAGLERIALLMQGVDNMYETDEVFPVIERAAAMAGKRYGADHTDDVRLRVVGDHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RSS  L+ DG+ P NE RGYVLRR+MRR +   RLLG  +  +  LL      M + YPE
Sbjct: 294 RSSLMLMTDGVTPGNEARGYVLRRLMRRTIRSMRLLGVEKVSLTELLDVSRQCMHATYPE 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLP 397
           +      I++   +E E F +TL+ G  L D  ++         L GD AF+L+DT+G P
Sbjct: 354 IDDQWERIKDIADNESESFERTLNSGTQLFDMAVAEARAAGSNELGGDKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D  +F   +++Q++RA+A +        +   +      G T F
Sbjct: 414 IDLTLEMASEQGLH-VDETAFRTLMDQQKARAKADAKAKKGNLQDAESYRELRDRGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L                        V + V+ +V  G +V+   +GQ  EVV ++
Sbjct: 473 VGYSEL-----------------------TVPTRVRGLVADGHVVDHLRAGQLGEVVLEE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G    D    ++ DVQ+   G+ VH      G LR    +   +D 
Sbjct: 510 TPFYAEMGGQDADAGVLRSDAGEFEVIDVQRPVPGLVVHTVRA-GGELRPGDEVQAMVDA 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R+     HSATH++H AL  ++G   +Q GS   P  LRFD   S  +++A    IE 
Sbjct: 569 VHRQGACQAHSATHIIHAALRELVGPTATQAGSYNKPGYLRFDFNSSHGLSAALKAEIEA 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +L V    M    A   GA A+ G KY D VRVV +    GG  S  LC GT
Sbjct: 629 RCNAAIRDDLEVSATQMPLAQAKGMGAMAMFGEKYPDIVRVVEM----GGPWSRELCAGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV    +I +L ++ E S+ AG RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVLHASQIGMLNLLGEQSVGAGTRRVEALVSTDAFEHMAAERALVNQLTGTLKVQPDQLT 744

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSV 812
            RV  + EE +  Q   A+ K    +            +  V+F S    +VD+  L+++
Sbjct: 745 DRVGALIEELKVAQKQIAELKAAQLLAGAPQLVSDAKDMWGVSFASKRYHDVDAGALRTL 804

Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
              ++ +    S ++ LVG S   K ++++  T    DR  NA  L R  A VLGG GG 
Sbjct: 805 AGQVRDQFGDRSAVVALVGGSAT-KPALVVATTRAARDRGLNAGALVREGAGVLGGNGG- 862

Query: 870 GRPHMAQSGGPNGNKADQAIAGVA 893
           G+P +AQ GG +  KAD+A+  V 
Sbjct: 863 GKPDLAQGGGTDAGKADEALRTVE 886


>gi|297571413|ref|YP_003697187.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931760|gb|ADH92568.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 890

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/923 (35%), Positives = 506/923 (54%), Gaps = 60/923 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F K+ H +  S SLI   DP+++FT +GMVPF     G EK  +  +
Sbjct: 1   MRTAEIRQRWLDYFAKHNHHIAESVSLISP-DPSILFTIAGMVPFTPYIIGTEKSPHPRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI LA+ LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGRTTRHGTFFQMCGNFSFGDYFKEGAIDLAFGLLTSSVDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + L++ RL++T++++D+ +F    K+ GL+   I+++   + FWS  + GP G C+EI 
Sbjct: 116 GYGLEKDRLWVTIWEKDDVSFDHLTKVIGLNPRHIVKLKREEIFWSTGQPGPAGSCAEIH 175

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMG 229
           +D+G        G + +  G+RY+EIWNLVF Q+ +   +         L + +IDTG G
Sbjct: 176 YDRGPEFGPEAVGGTVDPGGDRYLEIWNLVFDQYLRGEGEGKNFPLLGELEQTAIDTGAG 235

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ K N Y+ID    +IQA+E++TG  Y  N+   +  RV+ DH+RSS  LIA
Sbjct: 236 LERIAYLLQGKKNMYEIDEVYPVIQATERITGKTYGENDEDDILMRVVADHVRSSMMLIA 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RRA+   RLLGYT+     LLP     M  +YP L      I
Sbjct: 296 DGVRPGNDGRGYVLRRLIRRAVRSVRLLGYTDVAYPELLPVTKDAMKDSYPVLEAEFDRI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TL  G  + +   +   +  I L GD AF L+DT+G P+D+  ++  
Sbjct: 356 SQIAYNEEQAFRRTLTAGTQIFEQAAAEAKEAGIQLPGDAAFTLHDTYGFPIDLTLEMAS 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEK-YGATQFIGYDLLR 464
            +G+A +D   F Q ++EQ+ RARA +    +G  +  ++  ++ K  G T+F+GY    
Sbjct: 416 EKGIA-VDEAGFRQLMQEQKDRARADAQAKKTGHVDATVYHEIQAKSGGDTRFLGY---- 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  I++ G  V  A +  ++++V DQTPF+AE 
Sbjct: 471 -------------------TDYVADGKVIGILKDGVSVPAAEAPAEIDIVLDQTPFWAEQ 511

Query: 525 GGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G   +  G  + +TDVQ   +G+FVH   +  G +  + S+   ID   R Q+
Sbjct: 512 GGQLADHGTISVAGGGLVDVTDVQMPVKGLFVHRGTLTEGSIALDDSVRSAIDIPRREQI 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H AL   LG   +Q GS  +P  LRFD  H + + +  L  IE  VN+ +
Sbjct: 572 ARAHTATHMVHKALHEYLGEQATQAGSENSPSRLRFDFRHGEQVPTTILHDIESRVNERL 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V   +MN E A ASGA AL G KY + VRVVS+    GG  S  LC GTHVS +G
Sbjct: 632 QDNLTVSAEVMNIEAAKASGAMALFGEKYGNDVRVVSI----GGDWSRELCAGTHVSDSG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I L+ ++ ESSI +G+RRIEA+ GQ A +    +   L  L++   V    +   ++ +
Sbjct: 688 AIGLVTVLGESSIGSGVRRIEALVGQGAYAAGARERALLSQLSTLTHVRPEELPEHIDTL 747

Query: 764 WEEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQ 817
               +    ++   +++  L+       +  D+N ++ I  ++     + +++  +  L+
Sbjct: 748 LNRLKNADKEISALRKEKMLSAMASVLEQRTDINGIAVITHDLGDVASADDVRVAVMDLR 807

Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +++ S   ++ L G++KE+   V+            A  L  ++AK+LGGGGG G+P MA
Sbjct: 808 ERLGSTPAVVALTGVAKERPTIVIATNDAARSKGIKAGALVSVAAKILGGGGG-GKPDMA 866

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q GG +  +   A   + + + +
Sbjct: 867 QGGGTDVTQIPHAFDAITAAIAQ 889


>gi|291456669|ref|ZP_06596059.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381946|gb|EFE89464.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 892

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/926 (34%), Positives = 493/926 (53%), Gaps = 64/926 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFKE AI  AW+LLT      
Sbjct: 60  TSNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G   + +      DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWVTTFTDDEEARSIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G + +  R+IEIW+LVF  +E  N + +  L       + +IDTG GL
Sbjct: 175 VDRGPEY-GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G KY  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  LLP     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G+ +LD  +    K  D +++G  AF L+DT+G P+++  ++  
Sbjct: 354 EAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   VEV+ D+TPFYAEA
Sbjct: 471 ---------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   G
Sbjct: 630 RDNLAVTTKEMKFDDAIALGAMHLFGEKYGDVVRVVSIGEDGW---SRELCGGTHVDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A          +        +  A V      +    +   L+  +  +
Sbjct: 747 LAKLKESDRRLASMYEAQLAAAVPALVEDAKNSAAPVKVAIKNVGHFGAVDALRKTVLDV 806

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   E        A DL R ++K+LGGGGG G+P
Sbjct: 807 RGQLGEDAPAVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGASKILGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
             AQ GG + +K ++A+  +    +K
Sbjct: 866 DFAQGGGADASKINEALEALKHEAQK 891


>gi|217967411|ref|YP_002352917.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336510|gb|ACK42303.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 865

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/902 (34%), Positives = 484/902 (53%), Gaps = 53/902 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  F+++F    H  LPS+SL+P +DPTL+FT +GMVPFK  F GQ  P  + +
Sbjct: 1   MRSSDIRKKFIDYFVSKDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGIPPKRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TTVQKC R      D++ VG T RH TF EMLGNFSFG YFK  AI  A++ LTKE  + 
Sbjct: 61  TTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGIP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC-SEIFFDQG 180
             +L+I+VY+ED+EA+ +W K  G+  ++I+R+   DNFW            SEI++D G
Sbjct: 117 ISKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDFG 176

Query: 181 EC-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                       +  +R++EIWNLVFM +    + +   LP+ +IDTGMGLER+ TV++ 
Sbjct: 177 PKSKDEEDCKPGDPCDRFMEIWNLVFMAYYMDEEGKLSPLPQKNIDTGMGLERITTVVEG 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
            +N ++ DLF  +I+   ++     + ++ V  R+I DH+R  +FL+ DG++P NEGRGY
Sbjct: 237 VSNVFETDLFVPIIEEIRKIV----KDSDSVTERLISDHIRGITFLMGDGVVPTNEGRGY 292

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RR++  A   G  +P +  L+P +   M  AYP+LI+ K  I++ L  E+++F 
Sbjct: 293 VLRRLIRRSLRRAYKHGIVKPFLYKLVPIVVDIMKDAYPDLIEKKDYIQKVLIKEEDQFL 352

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +TL++GL LL+         + + G+ AFKLYDT+G P+++ ++I    G   +D+  FN
Sbjct: 353 RTLEQGLSLLEDYFRKAP-SKTVGGEFAFKLYDTYGFPIELTKEIAEEEGF-VVDVDGFN 410

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFS---LKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           + +EEQR +ARA        +   +      L +    ++F+GY++L     +       
Sbjct: 411 KYMEEQREKARASMEAKLEESFISLSDDEVYLMKSLPKSEFVGYEVLESESKV------- 463

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                                 G+  ++  +G++V  + D+TPFY E GGQ+ DTG    
Sbjct: 464 -----------------LFFIGGKHGKKISNGEEVYFLMDKTPFYPEGGGQVSDTGKVYN 506

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             + + + +V++  E   +H   V +G       +   +D + R     +H+ATHLLH A
Sbjct: 507 SEVEVMVLEVKRLGEDFIIHRGKVLKGEFEEGQIVRAEVDKEKRYHTMRHHTATHLLHAA 566

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L   LG+HV Q+GS ++P+ LRFD TH  P+T  +LK IE  VN+ I  N  V     N 
Sbjct: 567 LREYLGTHVMQSGSLVSPEFLRFDFTHHSPLTYEDLKIIERKVNENILANHKVEKFWTNL 626

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           E+A   GA AL   KY   VR++ +        S  LCGGTHV  TGEI   YIV E  I
Sbjct: 627 EEAKRMGAIALFTEKYQKNVRIIKINN-----VSMELCGGTHVDCTGEIGSFYIVKEEGI 681

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            +GIRRI A+ G +A      ++E L  ++  LK S   +  ++E++ +E ++ +     
Sbjct: 682 GSGIRRIFAVCGLKAWEFQKRREEILNKISFVLKSSPDEIYVKLEKLIDEMKEKEKKIKD 741

Query: 777 RKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSGIIMLVGISK 832
            + ++  ++L    +KI +    S I + VD +   +K + D L+ K  + I++    S 
Sbjct: 742 LEERIIEKELEVLANKIENWGEFSFICTYVDMENEAIKKLGDHLKSKNDNLIMVFFKPS- 800

Query: 833 EKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG--GPNGNKADQAI 889
           + K    I+V++ + L    A  +  +  +    G GGG+  +AQ      +     +A+
Sbjct: 801 DNKLLGTIMVSKKVNLKGITAKKIVEIIGERFN-GKGGGKDTLAQISLPKTDIEDIKRAL 859

Query: 890 AG 891
             
Sbjct: 860 KE 861


>gi|224436671|ref|ZP_03657675.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313143169|ref|ZP_07805362.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313128200|gb|EFR45817.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 992

 Score =  754 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1026 (31%), Positives = 501/1026 (48%), Gaps = 173/1026 (16%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTV 64
            IR  +LEFF+ NGH++  S  L+P +D +L+FTN+GMV FK+IFTG+   P     T+ 
Sbjct: 3   DIRALYLEFFKSNGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSS 61

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI  AW+ +T+    D+  
Sbjct: 62  QLCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSL 121

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183
           LY+T+++ D+EA++LW +   + + +I R+   DNFW M +TGPCGPCSEI+ DQG E  
Sbjct: 122 LYVTIHESDDEAYELWHE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFF 179

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + + NN
Sbjct: 180 NGEEDYFGGEGDRFLEIWNLVFMQYERSADGSLTPLPKPSIDTGMGLERVIALKEGEINN 239

Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--------------------NIVNHRVIVDHLRSSS 283
           +D  LF  ++Q  +++T   Y  +                    +I + RVI DH R+ +
Sbjct: 240 FDSSLFAPIMQCIKELTSKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADHARAVA 299

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
           FL+A G+    EGRGYVLRRI+RRA+ +  LLG  +  +  ++  +C  MG  Y  LI+ 
Sbjct: 300 FLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYSYLIER 359

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL--------------------- 382
           K  ++E  ++E+ERF +T++ G+ L +  L  L    +L                     
Sbjct: 360 KNALQEQCKAEEERFFETIESGMALFNAELEKLRGYSVLSDKSANLRSPTAALTSSKLLV 419

Query: 383 --------------------------------NGDVAFKLYDTHGLPLDIMQDILCARGL 410
                                           +G++AFKLYDT+G PLD+ QD+L   GL
Sbjct: 420 GSLGNADFSSQSLECQDSHKVDSNKTKEAMHFSGEIAFKLYDTYGFPLDLTQDMLRELGL 479

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
            G+D+  F + ++EQ+ R++AH  G G    +  + +L  ++G  +F+GY+ +       
Sbjct: 480 -GVDMQGFEKCMQEQKERSKAHWKGSGDSVKDGDFNALLSEFGENEFVGYESISTE---- 534

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             S I+  +    + VE   +GQ+  ++ + TPFY E+GG +GD
Sbjct: 535 ------------------SKILALLDSNFKRVESLQAGQEGWMMLESTPFYPESGGPIGD 576

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVH---------------------------HAIVERG 563
            G                   G FV                                 + 
Sbjct: 577 KGVLFSLEHSACNNSSLGNHSGDFVDFRGAADSMSSSPLKSTKSPTSNTANTRIVDSSKV 636

Query: 564 ILRTEMSLVLTI-DYQNRRQLSINH-SATHLL--------------------HHALSTIL 601
              +  +++  + D Q    L+++   AT +L                    H A   + 
Sbjct: 637 DSSSPQNIIAKVLDTQKYFGLNLSKVVATSMLKTGDLVKAQVDSSRFEIIKHHSATHLLH 696

Query: 602 GSHVSQNGSC-------ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            +     GS        +  + LRFD +H K ++  +L+ IE  VN  I ++ P V   M
Sbjct: 697 YALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVNDLEQIEALVNSKITESSPQVCETM 756

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             + A A GA AL G KY + VRV+++        S  LCGG H+ +T EI   YIV ES
Sbjct: 757 GIDQAKAKGAMALFGEKYGESVRVITLG------DSIELCGGIHIHNTAEIGSFYIVRES 810

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
           S+ +G+RRIEA+ G+ A  +     E +KSL   LK    +V+  V ++    +  +   
Sbjct: 811 SVSSGVRRIEAVCGKAAYHYGKAALESIKSLKEQLKAQ--DVLQGVAKLQNALK--EARE 866

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +  K + +V+ L   ++  V  +   +  V++KE K ++D  + + +   I+LV  S   
Sbjct: 867 SANKAKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKDIIDRAKNENEKVAILLVTES-GG 925

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP--NGNKADQAIAGV 892
           K S+   V    +    A    +  A++L GG GGGR   A +GG     NK  +A+   
Sbjct: 926 KVSLTAGVKG--VSSLKAGAWVKQVAQIL-GGNGGGRDDFATAGGKVTESNKVQEALDLA 982

Query: 893 ASFLKK 898
            +  ++
Sbjct: 983 KNIARE 988


>gi|302670582|ref|YP_003830542.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316]
 gi|302395055|gb|ADL33960.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316]
          Length = 884

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/912 (32%), Positives = 468/912 (51%), Gaps = 55/912 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R  + +F++  GH    + SL+      +MF  +GM P      G++ P+   + 
Sbjct: 5   TAQELREAWKQFYKDRGHVDCGAVSLVSDGSTGVMFNVAGMQPLMPYLLGKKHPMGTRLC 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
            VQ CVR     ND+D+VG    H TFFEM+G++S G YFK+   Q +++LLT+ F  D 
Sbjct: 65  NVQGCVRT----NDIDSVG-DKSHGTFFEMMGSWSLGDYFKKERCQWSFELLTQLFGFDA 119

Query: 123 RRLYITVYDEDEEAFK-----LWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             L  TV+  DE A +      ++  SG   + I  +   DN+W + E GPCGP SE+F+
Sbjct: 120 DHLAATVFAGDENAPRDEEGAKYRIESGFKPENIYYLPAEDNWWGL-EYGPCGPDSEMFY 178

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            +     G   G      +Y EI N VFMQ+E+ +      L + ++DTG GLER+   L
Sbjct: 179 VKDMPDCGPNCGPGCHCGKYTEIGNDVFMQYEKHHDGHLTPLTQKNVDTGWGLERILAFL 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRVIVDHLRSSSFLIADGI--LPA 293
               + Y IDL   +I   E+ +G+KYE +     + R++ DH R+S  LI D    LP+
Sbjct: 239 NGVDDVYKIDLHAPVIAYIEKESGLKYESDEKTTRSMRILADHTRTSVMLIGDEAKLLPS 298

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           N G GY+LRR++RRA+ +AR LG  +  ++ +      E   +Y  L + +  +   L  
Sbjct: 299 NTGAGYILRRLIRRAVRHARTLGLNKDQILGVATIYIDEYSESYENLAKNRKFVLTELER 358

Query: 354 EDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E  RF  TL+ G+     +L        + + G  AF LYDT G P+++  ++    G  
Sbjct: 359 EITRFESTLENGMKEFRKILDKTSAAGKKEIEGKDAFFLYDTFGFPVELTVELADEEGFT 418

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  ++EEQ+ +AR +     + +T    F   ++  AT+F+GY+ L        
Sbjct: 419 -VDEEGFKASMEEQKQKARENQNFSANLSTGTGLFDNLDESVATEFLGYEKLE------- 470

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                               V  I     +V E   GQ+  ++ D+T FY   GGQ+GD 
Sbjct: 471 ----------------CDGTVAVIAGADALVTELTEGQQGTIITDKTTFYGTMGGQVGDI 514

Query: 532 GCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G  +G +G + ++T+  K A G   H   V  G  +    + L++D +NR +   NHSAT
Sbjct: 515 GEILGSNGAKFEVTEAVKVAGGRTAHVGKVVSGSFKVSDKVTLSVDAENRAKTCRNHSAT 574

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL  AL  +LG  V Q GS   PD  RFD ++ + +T+ E+K +ED VN  I + LPVV
Sbjct: 575 HLLQKALQMVLGDGVEQAGSYQDPDKTRFDFSYHQAMTADEIKKVEDIVNSKILEALPVV 634

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           T+ M+ EDA  +GA AL G KY + VRVV++     G  S  LCGGTHV++T  I L  I
Sbjct: 635 TKEMSIEDAKKTGAMALFGEKYGETVRVVNM-----GDFSIELCGGTHVANTSHIGLFKI 689

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SES + AG+RRIEA+TG  AR++    +  L   A  LK +  ++V  ++++ EE + L
Sbjct: 690 LSESGVAAGVRRIEALTGDNARAYYKNVEANLGEAAKTLKTTPADLVDHIKKLQEELKNL 749

Query: 771 QLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +  +   K +     L        +I  V  ++  +  VD   L+ + D ++ K+  G++
Sbjct: 750 RSENESLKSKEAQAALGDVMDQVLEIKGVKLLATSVKGVDMNGLRDLGDQMKTKLGEGVV 809

Query: 826 MLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           +L+    + K +++ + T+  +    +A +L +  A  +GGGGG GRP+MAQ+GG N   
Sbjct: 810 VLIS-EADGKVNLVTMATDGAMAKGAHAGNLVKAIAPKVGGGGG-GRPNMAQAGGKNPAG 867

Query: 885 ADQAIAGVASFL 896
              A+A   + L
Sbjct: 868 IQDALAEAKTVL 879


>gi|308062521|gb|ADO04409.1| alanyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 847

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/898 (35%), Positives = 478/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+    S                 
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECS----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                +  +       + + +A   Q+V V+ ++TPFYAE GG +GD G    D     +
Sbjct: 458 -----AKALGFFDSDFKEITDANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEEAAM 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LG 
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGP 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED +N  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDKELEKVEDLINAQIFKHLTSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQKTPVSM------ 737

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            DL   KI  V+ +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 738 -DLPVEKIHGVDLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +  K   A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGKDIEKLQAALNLAKN 839


>gi|83814294|ref|YP_445665.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|123528738|sp|Q2S2B6|SYA_SALRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83755688|gb|ABC43801.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 966

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/987 (32%), Positives = 484/987 (49%), Gaps = 135/987 (13%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FFQ  GHE++PS+SL+P  D TL+FTN+GM  FK++F G  +  Y    
Sbjct: 19  SSEEIRQDFLQFFQAKGHEVVPSASLVPDGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAV 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + L  
Sbjct: 79  DTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAP 138

Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY TV++ D+        EA+ LW   + L  ++++   + +NFW M +TGPCGPCSE
Sbjct: 139 DRLYATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSE 198

Query: 175 IFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +  D           G    + +  + +E+WNLVF+Q+  Q       L    +DTGMG 
Sbjct: 199 LHVDLRPPEARQETPGRELVNVDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGF 258

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNI----------VNHRVIV 276
           ERM  VLQ K + YD DLF  L+QA    +  +    Y+  +I          +  RV+ 
Sbjct: 259 ERMVAVLQGKESTYDTDLFAPLLQAMADRSPREEIRGYDDLHIEDDDEHEQVRIALRVVA 318

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y    L   EP +  L+  L  +MG 
Sbjct: 319 DHIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGG 378

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL------------------- 376
            +  L + +  IE+ +RSE+E F +TL  G+   + V+ H+                   
Sbjct: 379 PFDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALR 438

Query: 377 -----------------------------GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
                                         +   L G +AF L+DT+G P+D+ + +   
Sbjct: 439 EDAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARE 498

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D+  +   ++ Q+ RARA S      +  + W S+     A+ F+GYD      
Sbjct: 499 RDL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVSP-GEASVFVGYDR----- 551

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 ++V     +   V E    Q+ EV   +TPFYAEAGGQ
Sbjct: 552 ----------------------AVVPDAEVRAVRVVETGDTQQYEVELSRTPFYAEAGGQ 589

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG        +Q+ D Q++ E I      V+      +  +   +D + R  +  +H
Sbjct: 590 VGDTGTLRFGDESVQVLDTQREGERIAH---TVDTLPEPLDGPVEAAVDAERRNHIRAHH 646

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHL+H  L   LG HV Q GS + PD LRFD +H   +    L+ IE  VN  I QN+
Sbjct: 647 TATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQNI 706

Query: 648 P-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P    R +  ++A+  GA AL   +Y DRVRV++ +       S  LCGGTHV +TGEI 
Sbjct: 707 PKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDP----DFSMELCGGTHVDATGEIG 762

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L   +SE S+ +G+RR+EA+ G+ A  H+  + E L       +    ++   + E+ EE
Sbjct: 763 LFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQEE 822

Query: 767 YRKL--QLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             +L  ++   +R +L   ++       A V+ ++ +   +D     +L+ +    + K+
Sbjct: 823 RDRLAGEVDQLRRGQLSDQLDTFIAENAASVDGITVVTGRLDRASMDDLQELGQQFRDKL 882

Query: 821 QSGIIMLVGISKEK--KASVLIVVTEDLLDR--FNAVDLA------RLSAKVLGGGGGGG 870
             G + ++G   E   KA V+  V +DL+D     A DL                     
Sbjct: 883 GEGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRLGGGGGGR------ 936

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
            P +A +GG +    D  + GV + ++
Sbjct: 937 -PSLASAGGRDPEALDTVLDGVPALVR 962


>gi|150864558|ref|XP_001383420.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
 gi|149385814|gb|ABN65391.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
          Length = 954

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/973 (31%), Positives = 469/973 (48%), Gaps = 107/973 (10%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S +R+TFL++F  K  H+ +PSSS++P NDPTL+F N+GM  +K IF G   P     
Sbjct: 10  TASKVRSTFLDYFTNKRDHKFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTADPASDLA 69

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK  AI  AW+LLT+
Sbjct: 70  SLKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKPEAITWAWELLTE 129

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD+ RLY+T ++ D         EA   W K+ G++ D I+     DNFW M + GP
Sbjct: 130 VYGLDKDRLYVTYFEGDAKQGLEPDLEAKSFWLKV-GVAEDHILPGNAKDNFWEMGDQGP 188

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           +++    +E+WN+VF+Q+ ++       LP   IDTGM
Sbjct: 189 CGPCSEIHYDRIGG-RNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKTLPAKHIDTGM 247

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +VLQ+K++NYD D+F  +      +TG++  G              +RVI DH+
Sbjct: 248 GFERLVSVLQDKSSNYDTDVFLPIFDKIRDITGIRPYGGKFGAEDTDGIDTAYRVIADHV 307

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAY 337
           R+ +F I DG +P N+G GYVLRRI+RR   Y R             L+  +  +    +
Sbjct: 308 RTLTFAICDGGVPNNDGAGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKEIF 367

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHG 395
           PE++     ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G
Sbjct: 368 PEIVHGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYG 427

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P D+ + +    GL  ID  +F +A  E +  ++A     G                  
Sbjct: 428 FPSDLTRLMAEEAGLK-IDEPAFEKARLESKEASKAIGNKDGV----------------- 469

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVV 514
           + +  D+   S+                    + + ++AI      V+       +  V+
Sbjct: 470 ELVKLDVHSLSELDSNANVSKTDDSAKYGRENIKATIQAIYSSSGFVDSIDDSSVQYGVL 529

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+TPFYAE GGQ+ DTG  + DG     +T+VQ    G  +H   +  G L  +  ++ 
Sbjct: 530 LDKTPFYAEQGGQIYDTGKLVIDGKAEFNVTNVQ-VYGGYVLHTGNIVEGSLNVKDDVIA 588

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           T D   R  +  NH+ TH+L++AL  +LG  V Q GS + P+ LRFD +H + +T  EL 
Sbjct: 589 TYDELRRWPIRNNHTGTHVLNYALREVLGDSVDQRGSLVAPEKLRFDFSHKQALTPKELA 648

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
           ++E   N+ I  N  V  + ++  +A   +G  A+ G  Y D VRVVS+           
Sbjct: 649 AVESISNEYIKSNKEVFYKDVSLNEAREINGLRAVFGETYPDPVRVVSIGVPVEDLLAEP 708

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---------- 731
              D    S   CGGTHV+ TG+I  L ++ ES I  GIRRI A+TG  A          
Sbjct: 709 KKADWHKVSIEFCGGTHVAKTGDIKDLVVIEESGIAKGIRRIVAVTGHDAHAVQKIASEF 768

Query: 732 ---RSHLMG------QDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772
                H  G      ++ K K L   LK    +V+ +           + I ++ +  Q 
Sbjct: 769 EAELDHAAGLPFGSVKETKAKELGVALKKLSISVLDKQKLTEKFNKIDKSIKDDLKTKQK 828

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
              K+ L +  E L      D   ++H+    ++K +    + L+K  +   + L+    
Sbjct: 829 AETKQTLDVVNEWLEKKDAGDY-LVAHVPINANAKAITEAFNLLKKSHKDKSLYLITGLT 887

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSA-------KVLGGGGGGGRPHMAQSGGPNGNKA 885
           +K A    +  E +    NA DLA+  +          G        ++ Q  G      
Sbjct: 888 DKVAHGCYIADEAIAKGVNASDLAQAVSAKIGGKAGGKG--------NIVQGMGDKPEGI 939

Query: 886 DQAIAGVASFLKK 898
            +A+  V   L +
Sbjct: 940 KEAVNEVTQLLAE 952


>gi|188528029|ref|YP_001910716.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|205830066|sp|B2UV04|SYA_HELPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|188144269|gb|ACD48686.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 847

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/898 (35%), Positives = 477/898 (53%), Gaps = 69/898 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKSKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  ++I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++    +  + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISDLASLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTE------------------- 455

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + ++       + + +A   Q+V V+ ++TPFYAE GG +GD G  + D     I
Sbjct: 456 ---CCAKVLGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEAAI 512

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
               K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGS
Sbjct: 513 VLDTKNFFGLNFSLLEIKK-ALKKGDQVIAQV-SDERLEIAKHHSATHLLQSALREVLGS 570

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HVSQ GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   G
Sbjct: 571 HVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKDKG 630

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRI
Sbjct: 631 ALALFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRI 685

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+ G+        ++++LK+    LK +  +V+  + ++ E  +  Q            
Sbjct: 686 EAVCGKAFYQLAKEENKELKNAKIALKNN--DVIAGINKLKESVKNSQK-------APVS 736

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            +L   KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V 
Sbjct: 737 VELPVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVK 792

Query: 844 EDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                   A   A   A++L       G          A +GG +      A+    +
Sbjct: 793 NAP---IKANVWANEVAQILGGKGGGRG--------DFASAGGRDIENLQAALNLAKN 839


>gi|149178839|ref|ZP_01857419.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148842314|gb|EDL56697.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 875

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/917 (34%), Positives = 489/917 (53%), Gaps = 72/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R ++L FF++ G    PS  L+P +D T++FT +GM  FK+ F G  K  + + 
Sbjct: 1   MKTDELRESYLSFFEEKGCVKRPSDVLVPRDDKTVLFTPAGMNQFKDQFLGVGKLEFPSA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q C+R G    D+ NVG T  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTCQMCLRTG----DIQNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEYLTDKKYLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP-----CGPCSE 174
           LD   L +TVY ED+EA+ +W     L A++I R   ++NFW            CGPCSE
Sbjct: 117 LDPSLLSVTVYQEDDEAYNIWHDEIKLPANRISRENEHENFWPAGAPSDGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           IF+          P   ++    +EIWNLVF QF +          LPK +IDTGMGLER
Sbjct: 177 IFYH---------PNGGKDN---VEIWNLVFTQFNRVGNPPDNLKPLPKKNIDTGMGLER 224

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGI 290
            A+VLQ   +N++ID  K L  A+  + G  Y+ +       R I DH+R+ +F I +G+
Sbjct: 225 TASVLQGVRSNFEIDTLKQLCLAAGDIVGTGYDFDAPSGRPVRRISDHVRAITFSIHEGV 284

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P  +   YV+R+++RRA+    LLG  EP +  L+PA+   M + YP++ +    ++ T
Sbjct: 285 NPGRDKESYVVRQLLRRALLEGYLLGKHEPFLHRLVPAVVEIMKAPYPDIAKTVENVQST 344

Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           ++ E+E+F   +++GL   +G L         +++G+ AF L+ T G  +++ + +    
Sbjct: 345 IKEEEEQFLGVIEKGLSRFEGFLKSAEQAGSSVISGEDAFDLHQTDGFLIELTEALAAKN 404

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            ++ ++   FN  ++  +  +      L S  +E    +L +    T F GY+       
Sbjct: 405 NMS-VNRTEFNNMMQRHQKDS-GSGAFLDSVMSEGPLTALHKTISETDFKGYETT----- 457

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQTPFYAEAG 525
                                S V  I+ +  +VE  V       V VV DQTPFYAEAG
Sbjct: 458 ------------------TTESKVIGIIAEDRLVESMVEKGHAHPVVVVLDQTPFYAEAG 499

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GDTG    DGI+ ++T+ QK A G+++H   +  G L    +L  T+    R  +  
Sbjct: 500 GQVGDTGFLEADGIKFEVTNTQKNA-GLYLHIGHLLTGKLEQGQTLTATVTEPRRSGIQR 558

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSATHLLHHAL T+LG +  Q GS +  D LRFD +HSK +T  E+  IED +N  +++
Sbjct: 559 AHSATHLLHHALHTVLGENAMQRGSKVEEDTLRFDFSHSKAVTPEEISRIEDIINQRVSE 618

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             PV T +M  + A   GA AL G KY D VRVV +     G  S+ LCGGTH+S+TG++
Sbjct: 619 GAPVTTELMKLQKARELGAMALFGEKYPDYVRVVQM-----GDFSTELCGGTHLSNTGQV 673

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIW 764
            L  I++E  +  G+RRI A+TG +A       ++ L  +A+ +KV    ++  R++ + 
Sbjct: 674 GLCKIINEELVAKGVRRIYALTGPKALEKTRDTEKLLLEIAAQMKVPRPDDLPVRIQHLQ 733

Query: 765 EEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKK 819
           +E R+ +    K   + L    +DL      + DV  +++   +    +L+ + D L+KK
Sbjct: 734 DELRETKKQLTKFSSKSLAGTADDLLEEAPVVNDVKIVAYHAKDASRDQLRELADHLRKK 793

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            +  + +++G   + K +++  V  DL+     A D  + +AKV+GGGGG GRP MA++G
Sbjct: 794 GKQ-VALILGTVLDGKVALMAAVNSDLVKQGLKAGDCVKAAAKVVGGGGG-GRPDMAEAG 851

Query: 879 GPNGNKADQAIAGVASF 895
           G + +K D+A+   A +
Sbjct: 852 GKDPDKLDEALTTGADY 868


>gi|306822871|ref|ZP_07456247.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|309801116|ref|ZP_07695245.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|304553503|gb|EFM41414.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|308222005|gb|EFO78288.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 892

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/922 (34%), Positives = 489/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++FQK+ H ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPQY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+++++G  Y  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TL+ G  + D  ++   +    +++GD AFKL+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   +EV+ D+TPFYAEA
Sbjct: 471 ---------------------SARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E  VND I
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVNDRI 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTH+   G
Sbjct: 630 RDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGEDGW---SRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L     A    V   S  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPALVADAKASQAPVKVASKNVGHFGSFDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   +        A DL R ++K+LGGGGG G+P
Sbjct: 807 RGQLGEDMPVVVALAGVNEDGKPMVAVATNDAARKQGIKAGDLVRGASKILGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG +  K D A+  +  
Sbjct: 866 DFAQGGGSDATKIDAALEALVD 887


>gi|269218535|ref|ZP_06162389.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211646|gb|EEZ77986.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 888

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/921 (35%), Positives = 498/921 (54%), Gaps = 60/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F K+ H + PS SL+   DP+++FT +GMVPF       E   +  V
Sbjct: 1   MRTAEIRQRWLDYFAKHDHHIAPSVSLVSP-DPSILFTVAGMVPFIPYILNTEPAPWPTV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI LAW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAIDLAWGLLTSSLAEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED  ++  W ++ GL +D I ++   +  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEEDAVSYDYWTRVIGLPSDHIQKLPFKEISWSTGQPGPAGACCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKM----SIDTGMGL 230
           +D+G    P G P +  +G+R++EIWNLVF +F + + +   F L       +IDTG GL
Sbjct: 176 YDRGPEYGPDGGPAADVQGDRFLEIWNLVFDEFVRGEGEGHDFELVGKLERTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ID    +I+A+E++ G KY  +  + V  RV+ DH+RSS  LI D
Sbjct: 236 ERIAYLLQGKANMYEIDEVYPVIRATEEIAGKKYGADAEDDVRMRVVADHVRSSLMLIGD 295

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P N+GRGYVLRR++RRA+   RLLG  + ++  L+      M  +YPEL      I 
Sbjct: 296 GVRPGNDGRGYVLRRLIRRAVRSIRLLGVDDVVLPSLIATSKDAMKDSYPELEAEFSRIL 355

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +   +E+  F +TL  G  + D   S   G +++L+G  AF L+DT+G P+D+  ++   
Sbjct: 356 DVASAEEAAFRRTLASGTQIFDLAASKASGGNKVLSGKDAFALHDTYGFPIDLTLEMASE 415

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLLRG 465
           +GL  +D   F + ++EQ+ RARA +    +G  +   ++  L E  G+T+F+GY     
Sbjct: 416 QGLK-VDEGEFRRLMQEQKDRARADARAKKTGHVDSAVYNEILDESGGSTRFLGYSET-- 472

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                G    + A++  G  V  A +  +V+VV DQTPFYAE G
Sbjct: 473 ---------------------GAEGKIVALLVDGVSVPAATAPAEVDVVLDQTPFYAEMG 511

Query: 526 GQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQL D G    +G   +Q+ DVQ   +G+ VH   V  G +     +   ID   R Q++
Sbjct: 512 GQLADRGTISVEGGGLVQVDDVQSPVKGLNVHRGTVSEGTIAVGEKVFAQIDVDRRGQIA 571

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H++TH++H AL   LG   +Q GS  +P  LRFD  H + I +  +  IE  VND + 
Sbjct: 572 RSHTSTHMIHKALHEFLGEQATQAGSENSPSRLRFDFRHGEQIPADVVMGIEGRVNDRLR 631

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NL V   IM+ + A A+GA AL G KY   VRVVS++       S  LC GTHV STG+
Sbjct: 632 ENLEVTDEIMDLDKARAAGAMALFGEKYGKEVRVVSID----DSWSKELCAGTHVPSTGK 687

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I L+ I+ ESSI +G+RRI+A+ G+ A ++   +   +  LA  +      +  R++ + 
Sbjct: 688 IGLVSILGESSIGSGVRRIDALVGEGAYAYGAKEHALVSQLAGIVGARPEELPERIDAVL 747

Query: 765 EEYRKLQLIHA---KRKLQLNVEDLSC--HKIADVNFMSHIISEV-DSKELKSVMDALQK 818
              +  +   A   + KL   V D+     +I   +     +  V    ++++V   ++ 
Sbjct: 748 SRLKSAEKEVAALRREKLSARVGDILGGRRRIGKFDLYWAGLGNVASGDDVRTVATDVRG 807

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           +I      +++VG     + SV++  T         A  L    +K+LGGGGG GR  +A
Sbjct: 808 RIDDSEAAVVVVGGVVNGRPSVVVATTSAARQAGARAGKLVSSFSKILGGGGG-GRDDVA 866

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q GG + +K  +A+  + + L
Sbjct: 867 QGGGQDPSKLLEALEDLEAQL 887


>gi|156371401|ref|XP_001628752.1| predicted protein [Nematostella vectensis]
 gi|156215737|gb|EDO36689.1| predicted protein [Nematostella vectensis]
          Length = 961

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/965 (30%), Positives = 481/965 (49%), Gaps = 88/965 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
               IR  F++FF +K+ H  +PSSS+IP  DPTL+F N+GM  +K+IF G   P     
Sbjct: 6   TAKDIRRKFIDFFVEKHNHTFVPSSSVIPHEDPTLLFANAGMNQYKSIFLGTVDPNSDMS 65

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG +FK+ AI  AW+ LT+
Sbjct: 66  KLKRAVNSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDFFKKGAIDFAWEFLTE 125

Query: 117 EFDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
              + + RLY+T +      + D E    W    GL   +++    +DNFW M +TGPCG
Sbjct: 126 VLKVPKERLYVTYFGGCDGVECDNETKDYWIGK-GLDPSRVLPFGMSDNFWEMGDTGPCG 184

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +EIWNLVF+QF ++N      LP   +DTGMGL
Sbjct: 185 PCSEIHYDRIGG-RDAKALVNMDDPTVLEIWNLVFIQFNRENDGTLKTLPSQHVDTGMGL 243

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +++Q K +NYD DLF        Q TG++  G            + +RV+ DH+R+
Sbjct: 244 ERLVSIIQGKMSNYDTDLFTPFFDKIHQATGVQPYGGQVGLADQNGIDMAYRVVADHIRT 303

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  ++DG  P N GRGYVLRRI+RR + Y+   L  +      L+  +   +G  +PEL
Sbjct: 304 LTVAMSDGGKPDNVGRGYVLRRILRRCIRYSIEKLNASPGFTASLVSVVIDTLGEFFPEL 363

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +    + + +  E+ +F KTL RG  L +   S +  D  + GDVA++LYDT+G P+D+
Sbjct: 364 NKDPQQVMDVINEEEVQFLKTLARGRRLFERTASKIT-DGTIPGDVAWRLYDTYGFPVDL 422

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL  +D+  + +A    + RA+  + G  S + + I   +   +   +    
Sbjct: 423 TELMAEERGLR-VDMEKYEEA----KRRAQEIARGKDSASDDAITLDV---HLLDKLQNV 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             L  +  + +            +   VS  +KA++ + E V E   G+   ++ DQT F
Sbjct: 475 MNLPPTIDLPKY-SYSSDALGSYVFQPVSGTIKALLHEKEFVNEVPGGEHCGIILDQTSF 533

Query: 521 YAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           YAE GGQ+ D G    +G   +  ++ +VQ    G +V H     G +R   ++   ID 
Sbjct: 534 YAEQGGQIYDEGFMTKEGDEDVEFRVINVQ--VHGGYVLHVGALEGAIRVGDTMNCLIDE 591

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             RRQ   NH+ATH+L+ AL   LG    Q GS + P+ LRFD T    +T  ++KS E 
Sbjct: 592 DRRRQCMNNHTATHILNFALRRTLGE-ADQRGSLVAPNRLRFDFTAKGAMTPEQVKSTEL 650

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------YEDGG 687
              +I+  +LPV  + +    A    G  A+    Y D VRVVS+           + G 
Sbjct: 651 FSKEIVTSDLPVFAKEVALAQAKDVQGLRAIFDEVYPDPVRVVSIGASFDELQPNPQAGY 710

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKS 744
            +S   CGGTH+  +  +    +VSE +I  GIRRI A+TG    +A  H    + +++ 
Sbjct: 711 KYSIEFCGGTHLQRSSHMETFVLVSEEAISKGIRRIVALTGPEGLKAEKHCEALEARVEK 770

Query: 745 LASFLKVSQGNVVGR-----VEEIWEE--------YRKLQLIHAKRKLQL---------- 781
           +   ++    N+  +     +  + E+        ++K ++    +K++           
Sbjct: 771 IRKEVEAESKNLRVKEAGQEITRLIEDINAAVISAWKKEEMRQTLKKVKKIVDNASKAMQ 830

Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS----GIIMLVGISK 832
                +  D +   I      + ++   D+   + V+DA  K+ ++      ++L+ + +
Sbjct: 831 AALMTSAADKAKAMITAEPDRTVVVELFDAGSNQKVLDAAMKQFKNLSPLTAVLLLSVDQ 890

Query: 833 EKKASVLIV-VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E K  + +  V +D+  +   A +     A +L GG  GG+   AQ+ GPN    D+A++
Sbjct: 891 ENKKIICLSQVPKDVTKKGLKADEWTGAIADIL-GGKSGGKEMSAQASGPNVGSIDKALS 949

Query: 891 GVASF 895
               F
Sbjct: 950 EAKQF 954


>gi|282853869|ref|ZP_06263206.1| alanine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583322|gb|EFB88702.1| alanine--tRNA ligase [Propionibacterium acnes J139]
 gi|314923563|gb|EFS87394.1| alanyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|315092198|gb|EFT64174.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
 gi|315103610|gb|EFT75586.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327327432|gb|EGE69208.1| alanine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 892

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/926 (32%), Positives = 475/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGASVSAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|317507135|ref|ZP_07964895.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974]
 gi|316254581|gb|EFV13891.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974]
          Length = 830

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/858 (36%), Positives = 450/858 (52%), Gaps = 53/858 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL  F KNGHEL PS+SLI  +DP L+F N+GMV F   F GQ  P    +
Sbjct: 1   MRTAEIIERFLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VG T RH+TFF+M GNFSFG YFKE AIQ AW LLT      
Sbjct: 60  TSVQKCVRTQ----DIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAIQFAWSLLTSSVEDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  RL+ TVY++D+EA +LWKK++GL  ++I R    DN+WSM   GP GPCSEI+
Sbjct: 116 GYGFDPNRLWATVYEDDDEAIELWKKVAGLPDERIQRRGPADNYWSMGIPGPSGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           FD+G    G   G   + +RY+EIWNLVFMQ E    + +        LPK +IDTGMG+
Sbjct: 176 FDRGPEF-GADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGV 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ   N Y+ D+ + +I  +EQ+TG +Y      +    RVI DH R++  LI 
Sbjct: 235 ERVAFLLQGVDNVYETDVVRPVIDCAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  ARLLG TE +   L+  +   M   YPEL++    I
Sbjct: 295 DGVNPGNDGRGYVLRRLLRRIVRSARLLGATEMVTPALVREVVAAMSPMYPELLREAPRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           E     E+  F  T+D G  L + V         +++ G  AF L+DT+G PL++  ++ 
Sbjct: 355 ERIAAGEETAFRNTIDSGSKLFEQVAEGVRSSSGKVIPGAEAFALHDTYGFPLELTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D   F + + EQR+RA+A +        ++  +       AT+F GYD L  
Sbjct: 415 QEVGL-QVDQEGFARLMAEQRNRAKADAKARKQAHADQSVYHELLDGPATEFTGYDELSS 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                     +  IV  G++  E  +GQ+ +++ D+TP YAE+G
Sbjct: 474 R-----------------------GSILGIVVDGQLANEVHAGQEAQIILDRTPLYAESG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL DTG     G    +TDVQ+ A+ +F H   V  G       +   +D + R   + 
Sbjct: 511 GQLADTGSISAPGAHADVTDVQRIAKRLFTHRVKVTEGAFAVGAEVTAQVDSKWRHGANQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS THL+H AL  +LG   +Q GS   P  LRFD      ++    + IE  V + +  
Sbjct: 571 GHSGTHLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPETRQDIESVVAEAVET 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           + PV T + + + A + GA AL G  Y +RVRVV +    GG  S  LCGGTHV+S+G+I
Sbjct: 631 DYPVNTFVTDIDRARSMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVASSGKI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + ++ ESS  +G RR+EA+ G  AR HL  +   L ++AS +         +V  + E
Sbjct: 687 GPVVLLGESSTGSGTRRVEALVGYDAREHLAKERTLLAAVASAVGSPAAEAPDKVRALVE 746

Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QS 822
             + L+   A++                  V  +  + +EVDS +L+ +  +L+      
Sbjct: 747 RVKTLEREIARQAQAQARAQAVGLAATAVPVGAVEFVGAEVDSDDLRGLATSLKDAFGPR 806

Query: 823 GIIMLVGISKEKKASVLI 840
             +  +      K S  +
Sbjct: 807 AAVAALFHKSGGKVSFAV 824


>gi|315092869|gb|EFT64845.1| alanyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
          Length = 892

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/926 (32%), Positives = 476/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S    +G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRAFGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGASVSAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|115432192|gb|ABI97370.1| AlaRS [Bos taurus]
          Length = 869

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/863 (34%), Positives = 436/863 (50%), Gaps = 72/863 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
               IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAGEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   +I+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F+    E+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTALIAEEKGL-VVDMDGFD----EERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K             +     + V A+ +    VEEA +GQ+  VV D+T 
Sbjct: 476 KGLEATDDSPKYSYH--SDSSGTYVFESAVATVMALRRDRMFVEEASTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ  D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVR-GGYVLHIGTL-YGSLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I    PV T   +   A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAESL 770

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
            KSL          V  +V+      + +Q   A     L    +   +  +        
Sbjct: 771 KKSLCV--------VEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFRE----- 817

Query: 802 SEVDSKELKSVMDALQKKIQSGI 824
              + K LK VMD L +  ++ +
Sbjct: 818 ---NLKSLKKVMDDLDRASKADV 837


>gi|50545890|ref|XP_500483.1| YALI0B04180p [Yarrowia lipolytica]
 gi|49646349|emb|CAG82710.1| YALI0B04180p [Yarrowia lipolytica]
          Length = 960

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/968 (31%), Positives = 473/968 (48%), Gaps = 93/968 (9%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
            + +R TFL++F +K  H  +PSSS+IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  ATKVRKTFLDYFGEKRAHSFVPSSSVIPYDDPTLLFANAGMNQYKPIFLGTCDPSSPLSK 69

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK  A   AW+LLT+ 
Sbjct: 70  LNRAANSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKAEACAWAWELLTQV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY++ +  D+        EA ++W  + G++ D I+   + DNFW M + GPC
Sbjct: 130 YGLDADRLYVSYFGGDDKLGLQPDLEAKQIWMDL-GVAEDHILPGDSADNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWN+VF+Q+ ++  +    LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGGGRNARDLVNMDDPNVLEIWNIVFIQYNREADKSLKPLPAKHIDTGMG 248

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  +    +++TG +                 +RV+ DH+R
Sbjct: 249 FERLVSVLQDKSSNYDTDVFTPIFAKIQELTGARDYAGKFGAEDADGIDTAYRVVADHVR 308

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P N+GRGYVLRRI+RR   + R             L P L  ++   +P
Sbjct: 309 TLTFALADGGVPNNDGRGYVLRRILRRGARFVRKKFDVPIGSFFSQLAPTLIEQVNEIFP 368

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           EL +    I E L  E++ F +TLDRG  L +   +    +   +L G   ++LYDT+G 
Sbjct: 369 ELSKRTEDIFEILNDEEQSFSRTLDRGEKLFEQYAADAKANSKTVLAGKDVWRLYDTYGF 428

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID  +F++A +E    ++      G                  Q
Sbjct: 429 PVDLTRIMAEEAGL-DIDEAAFDKAKQESLEASKGGKKTAGG----------------VQ 471

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS-SIVKAIVQQGEIVEEA-VSGQKVEVV 514
            +  D+   ++  K D             + +S + V AI      V+    S  +V ++
Sbjct: 472 LVKLDVHALAELEKNDAVPKTDDQAKFTESNLSDAKVVAIYNGTGFVDSVDESAGQVGLL 531

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T  YAE+GGQ  DTG  + DG     + +VQ    G  +H      G L+    + +
Sbjct: 532 LDKTCMYAESGGQEYDTGKIVIDGQTEFDVNNVQ-VYAGYVLHTGNFNYGSLKIGDVVNV 590

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  L  NH+ TH+L++AL   LG  + Q GS +  + LRFD +H   +T AE+ 
Sbjct: 591 GFDTARRTPLKNNHTGTHVLNYALKETLGDTIDQKGSLVASEKLRFDFSHKAGLTPAEVA 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSV 681
            +ED  N  I +NL V  + ++   A   +G  A+ G  Y D VR           + + 
Sbjct: 651 KVEDISNAYITKNLAVYAKSVDLTTAKKINGVRAVFGETYPDPVRVVSVGVPVEDLIANP 710

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---RSHLMGQ 738
           +      +S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TG+ A   +      
Sbjct: 711 DDAKWAEYSVEFCGGTHVGKTGEIKHLVIIEESGIAKGIRRIVAVTGKEAADVQKLAAEF 770

Query: 739 DEKLKSLASF-LKVSQGNVVGRVE--------------EIWEEYRKLQL-----IHAKRK 778
           DE+L  LA+  L   +      +                + E++ K+Q      I AK K
Sbjct: 771 DERLDKLAAQPLGADKEQAAKAIGVELKKLSVSTTSKLALQEKFNKIQKTITDGIKAKLK 830

Query: 779 LQLNVE----DLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQ-SGIIMLVGIS 831
            +             K  +  ++   + ++ +  K L   ++ ++ K+    + +  G  
Sbjct: 831 AESKASTDLVSSYFEKNPEATYLVAHVPDISANSKALSETINHVKSKLPGKSVYLFAGSP 890

Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            E K +    + E + ++   A  +  ++A ++GG  GG  P + Q  G N +K   A++
Sbjct: 891 AEGKVAHACFIDESVSNKGLTAQQMGAIAAGLVGGRSGGKGPTI-QGSGDNADKIADAVS 949

Query: 891 GVASFLKK 898
            +   + K
Sbjct: 950 ELEKEITK 957


>gi|294507557|ref|YP_003571615.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8]
 gi|294343885|emb|CBH24663.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8]
          Length = 966

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/987 (32%), Positives = 483/987 (48%), Gaps = 135/987 (13%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL+FFQ  GHE++ S+SL+P  D TL+FTN+GM  FK++F G  +  Y    
Sbjct: 19  SSEEIRQDFLQFFQAKGHEVVSSASLVPEGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAV 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK  AI+ AW+LL + + L  
Sbjct: 79  DTQKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAP 138

Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY TV++ D+        EA+ LW   + L  ++++   + +NFW M +TGPCGPCSE
Sbjct: 139 DRLYATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSE 198

Query: 175 IFFDQGECIP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +  D           G    + +  + +E+WNLVF+Q+  Q       L    +DTGMG 
Sbjct: 199 LHVDLRPPEARQETPGRELVNIDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGF 258

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNI----------VNHRVIV 276
           ERM  VLQ K + YD DLF  L+QA    +  +    Y+  +I          +  RV+ 
Sbjct: 259 ERMVAVLQGKESTYDTDLFAPLLQAMADRSPREEIRGYDDLHIEDDDEHEQVRIALRVVA 318

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y    L   EP +  L+  L  +MG 
Sbjct: 319 DHIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGG 378

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL------------------- 376
            +  L + +  IE+ +RSE+E F +TL  G+   + V+ H+                   
Sbjct: 379 PFDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALR 438

Query: 377 -----------------------------GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
                                         +   L G +AF L+DT+G P+D+ + +   
Sbjct: 439 EDAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARE 498

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D+  +   ++ Q+ RARA S      +  + W S+     A+ F+GYD      
Sbjct: 499 RDL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVSP-GEASVFVGYDR----- 551

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 ++V     +   V E    Q+ EV   +TPFYAEAGGQ
Sbjct: 552 ----------------------AVVPDAEVRAVRVVETGDTQQYEVELSRTPFYAEAGGQ 589

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG        +Q+ D Q++ E I      V+      +  +   +D + R  +  +H
Sbjct: 590 VGDTGTLRFGDESVQVLDTQREGERIAH---TVDTLPEPLDGPVEAAVDAERRNHIRTHH 646

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHL+H  L   LG HV Q GS + PD LRFD +H   +    L+ IE  VN  I QN+
Sbjct: 647 TATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQNI 706

Query: 648 P-VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P    R +  ++A+  GA AL   +Y DRVRV++ +       S  LCGGTHV +TGEI 
Sbjct: 707 PKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDP----DFSMELCGGTHVDATGEIG 762

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L   +SE S+ +G+RR+EA+ G+ A  H+  + E L       +    ++   + E+ EE
Sbjct: 763 LFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQEE 822

Query: 767 YRKL--QLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKI 820
             +L  ++   +R +L   ++       A V+ ++ +   +D     +L+ +    + K+
Sbjct: 823 RDRLAGEVDQLRRGQLSDQLDTFIAENAASVDGITVVTGRLDRASMDDLQELGQQFRDKL 882

Query: 821 QSGIIMLVGISKEK--KASVLIVVTEDLLDR--FNAVDLA------RLSAKVLGGGGGGG 870
             G + ++G   E   KA V+  V +DL+D     A DL                     
Sbjct: 883 GQGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRLGGGGGGR------ 936

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897
            P +A +GG +    D  + GV + ++
Sbjct: 937 -PSLASAGGRDPEALDTVLDGVPALVR 962


>gi|330752116|emb|CBL87077.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 870

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/928 (35%), Positives = 487/928 (52%), Gaps = 89/928 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + +R  FL+FF    H+++PS+ ++  NDPTLMFTN+GM  FK  F G        
Sbjct: 1   MKS-AEVRQQFLDFFASKTHKIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNSISKNVR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFKE AI  AW+LL   + +
Sbjct: 60  VADTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKEEAIAWAWELLVDVYKI 119

Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D   LY+T+++        +D EA+  W+KI  L  D+I+    +DNFW M + GPCGPC
Sbjct: 120 DPSILYVTIFEGHEGDGLAKDTEAYDFWEKI--LPEDRILLGNKHDNFWEMGDQGPCGPC 177

Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D    + +    G    + +  + +E+WNLVF++F ++  +    LP   +DTGM
Sbjct: 178 SEIHVDMRSTEEKKAISGASLVNMDHPQVVEVWNLVFIEFNRKADRSLEKLPAQHVDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286
           G ER+  VLQ KT+NYD D+F  LI   E  T + Y     ++   RVI DH R+  F +
Sbjct: 238 GFERLCMVLQNKTSNYDTDVFTPLISKIEVKTNLVYGKEETIDCAMRVIADHARTVFFAV 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   EP +  L+  L T+MG+ + EL   K 
Sbjct: 298 ADGQLPSNTGAGYVIRRILRRAIRYGYTFLDLKEPFIFRLVETLETQMGAVFSELKAQKE 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L +  +R E+  F KTL++GL+LLD ++S    ++ L G+  F+LYDT+G PLD+   I 
Sbjct: 358 LAKNVIREEEVSFLKTLNQGLLLLDDLISKTKGNK-LKGEQVFELYDTYGFPLDLTALIA 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G A +D   F +A+  Q+SR+RA S       TE            T F+GYD L  
Sbjct: 417 REKGFA-VDEAGFEKAMAVQKSRSRAASSSSAEDWTE------INDMPITGFVGYDDLEH 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           S  +   RK                           +    SG++ ++VF+ TPFY E G
Sbjct: 470 SVQLVRYRK---------------------------INSVKSGEQFQLVFNATPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD+G  +G    +   +  KK   + VH    +     T+ + +  +D + R +   
Sbjct: 503 GQVGDSGILLGSDGDIITIEDTKKENNLIVHF--TKTLPKNTQNTFIAKVDAKERFRSKC 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHL+H ALST+LG+HV Q GS +    LRFD +H   +++ E+K++E  VN  I +
Sbjct: 561 NHSATHLMHQALSTVLGTHVEQKGSMVHGANLRFDFSHFAKLSADEIKAVEAFVNARINE 620

Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            + +     +   +A+ASGA AL G KY D VR +          S  LCGGTHV +T +
Sbjct: 621 KIVLEENRSVPVAEAMASGAMALFGEKYGDSVRTIRFG------ESIELCGGTHVKNTAD 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    IVSES++ +GIRRIEAITG+  +++   Q+  L  +   LK  Q  +   +  + 
Sbjct: 675 IWHFKIVSESAVASGIRRIEAITGEAVQAYFESQEAILNHINENLKHPQDPI-KAISSLQ 733

Query: 765 EEYRKLQLIHAKR-KLQ-LNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKI 820
            E   L+    K  KLQ   V+     ++  VN +  + +EVD     +K +   L  + 
Sbjct: 734 AENALLKKEIEKLSKLQIQAVKQELQSQLKSVNGIDFLAAEVDLSPPAIKDLSFEL-GQG 792

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGR------- 871
           ++   +++   K  K  +   ++++L+     NA  + +            G+       
Sbjct: 793 KNNTFLVLVTRKGGKPVISCYISKELVAERSLNAGAVVKDL----------GKHIQGGGG 842

Query: 872 --PHMAQSGGPNGNKADQAIAGVASFLK 897
             P  A +GG N +     +A  ASF++
Sbjct: 843 GQPFFATAGGKNTDGISAVLAASASFIE 870


>gi|171915187|ref|ZP_02930657.1| alanyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 917

 Score =  751 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/958 (32%), Positives = 464/958 (48%), Gaps = 106/958 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
              + IR +FL+FF++  H ++PS ++     D   +FTN+GM  F  IF G+       
Sbjct: 1   MTSAQIRQSFLDFFKEKQHTIVPSDNVGYTSRDGARIFTNAGMNQFVPIFLGERPADVDT 60

Query: 58  ---------YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQ 108
                           QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI 
Sbjct: 61  WPGVLHKGLPTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKDAIS 120

Query: 109 LAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKIS---GLSAD-KIIRITT 156
            AW+L+ + +     R++ T+Y        + DEE++  W +     GL  +  I+    
Sbjct: 121 WAWELVIERWKFPPTRVFATIYQPGEGDPAERDEESWGYWAEKFRSVGLDPEIHIVNGNK 180

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGE--------CIPGGLPGSSEEGERYIEIWNLVFMQF 208
            DNFW MAETGPCGPC+EI  D               G    +      IEIWN VF+Q+
Sbjct: 181 KDNFWMMAETGPCGPCTEIHIDLTPGPRDLDEGRQREGAKLVNGSSADCIEIWNNVFIQY 240

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQE----------KTNNYDIDLFKHLIQASEQ 258
                +    LP   +DTGMG ER+ +++Q           K +NYD D+FK +     +
Sbjct: 241 NANADKTFSKLPAQHVDTGMGFERVTSIIQGTRNFTDFENAKISNYDTDVFKPIFDEISK 300

Query: 259 VTGMKY--------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           ++G  Y              +    V  RV+ DH+R+ SF IADGI P N  R Y LRRI
Sbjct: 301 MSGKTYASTLPASGSTGDTEQEKIDVAFRVLADHIRTLSFSIADGISPGNNDRNYTLRRI 360

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RRA+ Y R LG+ EP    L+  L   MG  +PEL   K  ++  L+ E+E F +TLDR
Sbjct: 361 LRRAVKYGRTLGFKEPFFYKLVDVLAQHMGEVFPELRARKEHVKSVLKMEEESFNRTLDR 420

Query: 365 GLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           G+ L +     L GK   + G+VAF+L DT G P+D+ Q +   RGL  +D+  + + L 
Sbjct: 421 GISLFESEADKLAGKGTEITGEVAFRLSDTFGFPIDLTQLLARERGLT-VDVPEYERLLA 479

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ+ R+   S G      + +  S  E    T+FIGYD L                    
Sbjct: 480 EQKKRSTEDSKGRK----QVVSLSEIETKEPTKFIGYDNLEAP----------------- 518

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                           +++E      K  VV D +PFYAE GGQ+GD+G  I       I
Sbjct: 519 ---------------AKVLEVVSMKDKTAVVLDSSPFYAEMGGQVGDSGALIIGADSFPI 563

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           ++ QK   G    H +         +   L ++   RR +  +H+ TH++H AL  ++  
Sbjct: 564 SNTQKV--GNTWLHFLDGEDTPSVGVEAQLAVEPSRRRAIERHHTVTHIMHWALHEVVSK 621

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS- 662
             +Q GS + PD L FD   S  +T+A+L  IE  VN+ I  N  V    +   +  ++ 
Sbjct: 622 EATQKGSFVGPDKLTFDFN-SAALTAAQLADIERLVNERIVANDVVSWDELPYAEVKSNP 680

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           G   L G KY D+VRVV V  +   +  +S  LCGGTH  STGEI L  +VSES++ AG+
Sbjct: 681 GIMQLFGEKYGDKVRVVQVGGQAHALNGYSMELCGGTHTRSTGEIGLFRLVSESAVSAGV 740

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           RR+EAI G  A        + LK LA   L     ++  ++E + ++ + L+      + 
Sbjct: 741 RRLEAIAGLEAYRAARSDADLLKLLAGKVLAQGTLDLEKKIETLLDQQKALEKALKSAQQ 800

Query: 780 QLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +           +A  + +   + EVD     +V DAL+  + SGI+++ G +     S+
Sbjct: 801 REAAARAKALLGLASNDAIIANLGEVDGDYAMAVSDALKS-LFSGIVVVAGTA-GGNVSL 858

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +  V++D   +  A  + +  A ++ GG GGG+P  A+ GG    K D A+      +
Sbjct: 859 IATVSKDHQAKLQAGKIIQAIAPIV-GGKGGGKPDFARGGGKEVAKVDAALDEARKLV 915


>gi|46108048|ref|XP_381082.1| hypothetical protein FG00906.1 [Gibberella zeae PH-1]
          Length = 957

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/968 (32%), Positives = 480/968 (49%), Gaps = 97/968 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE-----KPVY 58
            + +R TF E+F++ GH ++PSSS++P NDPTL+FTN+GM  FK IF G           
Sbjct: 10  AARVRKTFFEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDPMASL 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +A    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK +
Sbjct: 70  KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWELLTKVY 129

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T ++ DE        EA +LW  + G+  D I+     DNFW M + GPCG
Sbjct: 130 GLDPSRLYVTYFEGDEKLKLEPDLEAKELWISV-GVPEDHILPGNMKDNFWEMGDQGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +E+WN VFMQ+++Q       LP   IDTGMG 
Sbjct: 189 PCSEIHYDKVGG-RNASSLVNMDDPMVVEVWNNVFMQYDRQKDGSLKSLPAKHIDTGMGY 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ + LQ+  +NY  D F  L Q  ++VTG +   +             +RV+ DH+R+
Sbjct: 248 ERLVSALQDTVSNYATDCFTPLFQKIQEVTGARPYTDKYGKDDADGIDTAYRVVADHIRT 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            SF IADG +P N+GRGYV+RR++RR + YAR     +       +LPAL  +MG  +PE
Sbjct: 308 LSFSIADGAVPNNDGRGYVIRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQFPE 367

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           L++ +  I+E L  E+  F KTLDRG    +   +   K+  + L GDV ++LYDT G P
Sbjct: 368 LVKKQQDIKEILDEEEVAFAKTLDRGEAQFEKYAAEATKNGAKKLQGDVVWRLYDTFGFP 427

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   R L   D       ++  + +AR  S  +                    F
Sbjct: 428 VDLTRLMAEERNLEIDDEE-----VKAAQDKAREASKAVKESVQ--------------TF 468

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVV 514
              ++ + S+  K+ +          L    ++ V+ I      ++          + ++
Sbjct: 469 AKLNVHQISELEKDLKVERTNDDAKFLLGDSNAQVQLIYDGTSFLKSTKDVPEKTALGLL 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE+GGQ+ DTG  + D +   ++ DVQ    G  +H+  +E G L +   ++ 
Sbjct: 529 IDKTNFYAESGGQVADTGRIVIDDVAEFKVLDVQ-NYGGYVLHNGYIEYGTLSSGDKVIC 587

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NHS TH+L+H+L  +LG  V+Q GS +  D LRFD +H   +   ELK
Sbjct: 588 EYDELRRSPIRNNHSGTHILNHSLREVLGDEVNQKGSLVDSDKLRFDFSHKTGVKIEELK 647

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
            IE+  N+ I +   + ++ ++ E A    G  A+ G  Y D VRVVS+  +        
Sbjct: 648 KIEEMSNEYIRRGQKIYSKEVDLEKARQIEGCRAVFGETYPDPVRVVSIGKDIDEMLADP 707

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM----- 736
              +   +S   CGGTHV  TG I  L ++ ES I  GIRRI A TG+ A          
Sbjct: 708 KKPEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREADEF 767

Query: 737 --------------GQDEKLKSLASFLK------VSQGNVVGRVEEI----WEEYRKLQL 772
                          ++ ++K+++  L       +++ +   R ++I      E +K Q 
Sbjct: 768 SKKIDALDQLPLGPEKEAQMKAVSVELSQLTISTLTKDDFNKRYQKINAAVTAEQKKRQK 827

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +K  L    +    +K A   F+  +     SK L  V+   Q K +   + + G SK
Sbjct: 828 AESKTALDTVKKHFDTNKDAKW-FVGRLPVGATSKALMEVVKHYQGKDKEKTVYVFGGSK 886

Query: 833 EKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           E+ A    + V T        A   A   ++V+GG  GG  P   Q  G      D+ + 
Sbjct: 887 EEGAVAHGVYVGTHLASQGVTAEQWAASVSEVIGGRSGGKEPTR-QGQGTKPENLDEGVE 945

Query: 891 GVASFLKK 898
               +L +
Sbjct: 946 TATKWLDE 953


>gi|302838115|ref|XP_002950616.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f.
            nagariensis]
 gi|300264165|gb|EFJ48362.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f.
            nagariensis]
          Length = 1143

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/986 (31%), Positives = 460/986 (46%), Gaps = 115/986 (11%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP----------------- 45
            + +  R  F EFF+   H    SSS++P NDPTL+FTN+GM                   
Sbjct: 178  SGARTRAAFNEFFETKAHTYWASSSVVPHNDPTLLFTNAGMNQASDQSQGQANWQHHHAY 237

Query: 46   -----FKNIFTGQEKPVY-----QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95
                 FK +F G   P       +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN
Sbjct: 238  LPHSWFKPVFLGTVDPNSDMGKLKRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGN 297

Query: 96   FSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLS 147
            +SFG YFKE AI  AW+LLTK + L   RLY T +          D+EA ++W +   L 
Sbjct: 298  WSFGDYFKEEAISWAWELLTKWYKLPADRLYATYFRGDPGQGLPADDEAREIWLRF--LP 355

Query: 148  ADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ 207
              +++     +NFW M + GPCGPC+EI FD+           + +    +EIWN VF+Q
Sbjct: 356  ESRVLPYGNKENFWEMGDQGPCGPCTEIHFDRIGG-RDAADLVNADDPNVLEIWNNVFIQ 414

Query: 208  FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN 267
            F ++       LP   +DTGMGLER+ +VLQ K +NY  DLF  +  A +QVTG +   +
Sbjct: 415  FNREPDGTLKTLPAKHVDTGMGLERITSVLQGKMSNYATDLFGPIFDAIQQVTGARTYTD 474

Query: 268  N---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGY 317
                       + +RV+ DH+R+ SF IADG  P NEGR YVLRRI+RRA+ Y R  LG 
Sbjct: 475  KIGKEDADGVDMAYRVVADHIRTLSFSIADGARPGNEGRDYVLRRILRRAVRYGRETLGA 534

Query: 318  TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
             E     L+  +    G  +PEL++ +  I   LR E+  F +TL +G+       S   
Sbjct: 535  KEGFFAGLVDVVVANFGGFFPELVKQRDTIYSVLREEEAAFSRTLVKGIERFKKAASAAT 594

Query: 378  KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             ++ + G  AF L+DT+G P+D+ Q +   RG+  +D+ ++  AL E R ++R    G  
Sbjct: 595  DNK-IPGYEAFVLWDTYGFPVDLTQLMAEERGMT-VDMPAYEAALNEAREKSR---QGGK 649

Query: 438  SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
                  I F                   + +++ +   L    P   ++ VS+ V AI+ 
Sbjct: 650  KAAGAGIKFE---------------AEATGWLQSNGVPLTNDAPKYGSSDVSAKVLAILT 694

Query: 498  QGEIV----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
             G  V    E A     V +V D T FYAE+GGQ+GDTG   G      +    + A G 
Sbjct: 695  PGGFVASTSEAADQDGPVGLVLDTTSFYAESGGQIGDTGAIRGPEGAALVVSDCQVAAGF 754

Query: 554  FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             +H         R    + +++DY+ R  +  NH+ TH+L+ AL + LG HV Q GS + 
Sbjct: 755  VLHVGEASVAPFRVGDEVTVSVDYERRSLIKPNHTFTHVLNFALKSTLGDHVDQKGSIVL 814

Query: 614  PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY 672
            PD LRFD +++ P+ + +L ++E    + +A  +PV +  +    A + +G  A+ G  Y
Sbjct: 815  PDKLRFDFSNAGPVEANQLAAVEKICREAVAAAMPVHSGEVPLAQARSINGLRAVFGEVY 874

Query: 673  NDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             D VRVVS+                   S   CGGTH+S+T E     ++SE  I  GIR
Sbjct: 875  PDPVRVVSIGRAVEELLADPKDAANAAFSIEFCGGTHLSNTSEAEAFALLSEEGIAKGIR 934

Query: 722  RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            RI A+T   A   +    +    LAS   + +  +    +   E      +    +    
Sbjct: 935  RIVAVTRGDAVRAIEAAADLKAELASIATLPEDQLEKACKGFKESVDAAVIPAVDKAALR 994

Query: 782  NVEDLSCHKIADVN-----------------------------FMSHIISEVDSKELKSV 812
            +   +   ++ +                                +  +   +D++ +   
Sbjct: 995  DELAVLGRRVIEFQKAAAAANKALAAERAVAAADAAVAAGKSFVIGRLDVGLDTRAVGEA 1054

Query: 813  MDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
              A+  K  +   + V +  E  KA     V + + DR  A +    +   LGG GG G+
Sbjct: 1055 CSAIIAKHSTLAALFVSVDAEKGKALAYAAVPDSVTDRLKANEWVSTALGPLGGKGG-GK 1113

Query: 872  PHMAQSGGPNGNKADQAIAGVASFLK 897
             + AQ  G N  K D+A+    +F +
Sbjct: 1114 ANNAQGQGANVEKVDEALGAATAFAE 1139


>gi|298346853|ref|YP_003719540.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
 gi|298236914|gb|ADI68046.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063]
          Length = 895

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/924 (33%), Positives = 481/924 (52%), Gaps = 62/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKM----SIDTGMGL 230
            D+G    P G P    +G+RY+E+WNLVF +F +     + + L       +IDTG+GL
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIA 287
           ER+A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI 
Sbjct: 236 ERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILC 406
            E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I  
Sbjct: 356 SEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
             G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY  
Sbjct: 416 EAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY-- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 473 ---------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+
Sbjct: 572 AIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  
Sbjct: 632 RVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+ 
Sbjct: 688 TGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + +  +  +    K +L   + +L         +  V  +  +       +L+     L
Sbjct: 748 SLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATTL 807

Query: 817 QKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           + +  +    ++ +      K  +++ V E   ++   A  L +  A  +GGGGG G+  
Sbjct: 808 RARFSNANPAVVALAAVIGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGGG-GKDD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ GG    K +  +  +   L+
Sbjct: 867 LAQGGGALAGKPETGLNALVDTLR 890


>gi|171743066|ref|ZP_02918873.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC
           27678]
 gi|283455924|ref|YP_003360488.1| alanyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|171278680|gb|EDT46341.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC
           27678]
 gi|283102558|gb|ADB09664.1| Alanyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 892

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/922 (34%), Positives = 489/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++FQK+ H ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPQY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+++++G  Y  +    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P++  L P     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E+   E++ F +TL+ G  + D  ++   +    +++GD AFKL+DT+G P+++  ++  
Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D + F + + EQ+ RARA +L         ++   K+       F+GY  +  
Sbjct: 414 EQGVK-VDEVKFRELMAEQKGRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   +EV+ D+TPFYAEA
Sbjct: 471 ---------------------SARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E  VND I
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVNDRI 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTH+   G
Sbjct: 630 RDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGEDGW---SRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  +
Sbjct: 687 KIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERVNTL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L     A    V   S  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAASVPALVADAKASQAPVKVASKNVGHFGSFDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   +        A DL R ++K+LGGGGG G+P
Sbjct: 807 RGQLGEDMPVVVALAGVNEDGKPMVAVATNDAARKQGIKAGDLVRGASKILGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG +  K D A+  +  
Sbjct: 866 DFAQGGGSDATKIDAALEALVD 887


>gi|330752589|emb|CBL87535.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 873

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/927 (34%), Positives = 488/927 (52%), Gaps = 89/927 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  FL+FF+   HE++ S+ ++  +DPTLMFTN+GM PFK  F G  +P  + 
Sbjct: 1   MKSF-DIRKQFLDFFESKAHEIVSSAPMVIKDDPTLMFTNAGMNPFKEFFLGFAQPTSKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QKC+R  GKHNDL+ VG    HHTFFEMLGN+SFG YFK+ AI+ AW+LL   + +
Sbjct: 60  LADTQKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLIDIYKI 119

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  RLY+T++        ++D EA+ LWK I  L  D+I+  +  DNFW M + GPCGPC
Sbjct: 120 DAERLYVTIFEGSLGEKLEKDTEAYNLWKAI--LPEDRILLGSKKDNFWEMGDQGPCGPC 177

Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI  D + +      PGS   +++  + IE+WNLVF++F +        LPK  IDTGM
Sbjct: 178 SEIHIDTRPKTEWEKTPGSALVNKDHPQVIELWNLVFIEFNRNADGGLEKLPKKHIDTGM 237

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286
           G ER+  VLQ K +NYD D+F  +I   E++T   Y     + V  RVI DH+R+  F I
Sbjct: 238 GFERLCMVLQGKISNYDTDVFTPIINEIEKITKYNYGVSEKSDVAIRVIADHIRTVFFAI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG LP+N G GYV+RRI+RRA+ Y    L   +P +  L+  +  ++   +PEL + K 
Sbjct: 298 ADGQLPSNIGAGYVIRRILRRAIRYGFTFLDQKKPFIHLLVEIISKQLSDIFPELKKEKK 357

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           L +  ++ E+E F KTLD+GLVLL+ V+ +L   + + GD  F+LYDT G P D+   I 
Sbjct: 358 LAQNVIKKEEESFLKTLDQGLVLLENVIKNLKAKK-IPGDKVFELYDTFGFPFDLTTLIA 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL  ID   F +A+ +Q+SR+R  +L          W  +KE     +F+GYD L  
Sbjct: 417 NERGLE-IDKEGFEKAMGKQKSRSRGATLSKVGD-----WIVIKES-KKEEFVGYDTLES 469

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
           +  +   RK+   K                            G   ++ FD+TPFY E G
Sbjct: 470 NILITRYRKMNTNK---------------------------DGDFYQLTFDKTPFYPEGG 502

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G    +   +      KK   + +HH   +    + ++S  + ++ + R   S 
Sbjct: 503 GQVGDQGYLELENGEILNITDTKKENNLVIHHC--KSLPKKMDISFKVFVNPELRLNTSS 560

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHL+H AL  +LG+HV Q GS +     RFD +H   + + +LK++E  VN+ I +
Sbjct: 561 NHTATHLVHQALRFVLGNHVQQKGSMVNSKMFRFDFSHFSKLKNEQLKNVEKFVNERILE 620

Query: 646 NLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +P+  +  +  + A+  GA AL G KY   VR +          S  LCGGTHV +T +
Sbjct: 621 KIPLEEQREIPHDKALEEGAIALFGEKYGKNVRTIRFGK------SIELCGGTHVKNTSD 674

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    I+SES++ +G+RRIEA+TG   +++   Q   LK++   LK SQ  V   +  + 
Sbjct: 675 IWYFKIISESAVASGVRRIEAVTGSAVKNYFENQTTILKNINQLLKQSQDPV-KAILNLQ 733

Query: 765 EE---YRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
            E    +K     +K K +    +L      I+ VNF++  I E+D++ +K +   +  K
Sbjct: 734 SENIFLKKEISALSKLKSKTLKSELLKEIKIISGVNFLAKEI-EIDAQGMKDLSFEI-GK 791

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPH---- 873
             + II++ G  K  K  +   +++ L+  D  +A  + +   + +              
Sbjct: 792 EFNKIILVFGSRKTGKPLISCYISKQLVNEDGRDASQIIKYLGQYI---------DGGGG 842

Query: 874 ----MAQSGGPNGNKADQAIAGVASFL 896
                A +GG      + A+      L
Sbjct: 843 GQSFYATAGGKKIEGINLALDEAKKIL 869


>gi|315656689|ref|ZP_07909576.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492644|gb|EFU82248.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 895

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/929 (33%), Positives = 481/929 (51%), Gaps = 66/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKM----SIDTGMGL 230
            D+G    P G P    +G+RY+E+WNLVF +F +     + + L       +IDTG+GL
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIA 287
           ER+A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI 
Sbjct: 236 ERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILC 406
            E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I  
Sbjct: 356 SEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
             G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY  
Sbjct: 416 EAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY-- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 473 ---------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+
Sbjct: 572 AIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  
Sbjct: 632 RVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+ 
Sbjct: 688 TGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + +  +  +    K +L   + +L         +  V  +  +       +L+     L
Sbjct: 748 SLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATTL 807

Query: 817 QKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           + +  +    ++ +      K  +++ V E   ++   A  L +  A  +GGGGG G+  
Sbjct: 808 RARFSNANPAVVALAAVIGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGGG-GKDD 866

Query: 874 MAQSG----GPNGNKADQAIAGVASFLKK 898
           +AQ G    G      +  +  + + L K
Sbjct: 867 LAQGGGAPTGKPETGLNALVDTLRTILTK 895


>gi|313104284|sp|P40825|SYA_YEAST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS; Flags: Precursor
          Length = 983

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/978 (30%), Positives = 467/978 (47%), Gaps = 115/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 35  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 94

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 95  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 154

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 155 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 214 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 272

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 273 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 332

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 333 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 392

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 393 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 452

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 453 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 505

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 506 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 553

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 554 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 612

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 613 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 672

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 673 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 732

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 733 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 792

Query: 738 --------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +++  +  +  +I +  +      AK+
Sbjct: 793 ADLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKK 852

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI---QSGIIMLVGIS 831
           + +  ++++      + N    +  I    ++K +   ++ ++         I +L G  
Sbjct: 853 ENKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGND 912

Query: 832 KEKKASVLIVVT-EDLLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGP 880
            E + +    ++   L    +   LA+  + +          +            Q  G 
Sbjct: 913 PEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVF-----------QGMGD 961

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  + S  K+
Sbjct: 962 KPAAIKDAVDDLESLFKE 979


>gi|289425435|ref|ZP_06427212.1| alanine--tRNA ligase [Propionibacterium acnes SK187]
 gi|289154413|gb|EFD03101.1| alanine--tRNA ligase [Propionibacterium acnes SK187]
          Length = 913

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 474/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 22  MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 81  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 136

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 137 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 195

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 196 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 254

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 255 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 314

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 315 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 374

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 375 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 434

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 435 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 493

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 494 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 530

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 531 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 589

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 590 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 649

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 650 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 705

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 706 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 765

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 766 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 825

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 826 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 884

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 885 KDDMAQGAGSDPTGIDAALRAVNTEL 910


>gi|304389442|ref|ZP_07371405.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327252|gb|EFL94487.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 895

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/924 (33%), Positives = 479/924 (51%), Gaps = 62/924 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKM----SIDTGMGL 230
            D+G    P G P    +G+RY+E+WNLVF +F +     + + L       +IDTG+GL
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIA 287
           ER+A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI 
Sbjct: 236 ERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I
Sbjct: 296 DGVRPGNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILC 406
            E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I  
Sbjct: 356 SEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
             G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY  
Sbjct: 416 EAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY-- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 473 ---------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+
Sbjct: 572 AIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  
Sbjct: 632 RVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+ 
Sbjct: 688 TGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + +  +  +    K +L   + +L         +  V  +          +L+     L
Sbjct: 748 SLMDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQFAPAGSVDDLRQAATTL 807

Query: 817 QKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873
           + +  +    ++ +      K  +++ V E   ++   A  L +  A  +GGGGG G+  
Sbjct: 808 RARFSNANPAVVALAAVIGGKPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGGG-GKDD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
           +AQ GG    K +  +  +   L+
Sbjct: 867 LAQGGGALAGKPETGLNALVDTLR 890


>gi|271967372|ref|YP_003341568.1| alanine--tRNA ligase [Streptosporangium roseum DSM 43021]
 gi|270510547|gb|ACZ88825.1| Alanine--tRNA ligase [Streptosporangium roseum DSM 43021]
          Length = 890

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/932 (34%), Positives = 475/932 (50%), Gaps = 80/932 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   FL FF++ GH ++PS+SLI   DPTL+   +GMVPFK  F GQ+KP +   
Sbjct: 1   MESAEIARRFLRFFEERGHTVVPSASLIA-EDPTLLLVPAGMVPFKPYFLGQQKPPFNRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE+AI LAW+LLTK     
Sbjct: 60  TSVQKCVRT----PDIDEVGKTTRHATFFQMLGNFSFGDYFKEQAIPLAWELLTKPESEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   Q RL++TVY +D+EA+ +W    G+ +++I R    DN+W M   GP GPCSEI+
Sbjct: 116 GFGFPQERLWVTVYQDDDEAYGIWHDKVGVPSERIQRRGLEDNYWHMGVPGPGGPCSEIY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   +  RY+E+WN VFMQF+    + +        LP  S+DTGMGL
Sbjct: 176 YDRGPEY-GRDGGPVADENRYLEVWNNVFMQFQLSAVRSKVDFDVAGELPARSVDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMA +LQ   N Y+ID    ++  + ++T  +Y  +    V+ RVI DH+R+   L+AD
Sbjct: 235 ERMAAILQGVDNIYEIDTTYKILDRAAELTKTRYGRDERADVSLRVIADHVRTGVMLVAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGY-TEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           G+LP+NEGRGYVLRRI+RRA+   RLLG   E  M  L       MG  YPEL      I
Sbjct: 295 GVLPSNEGRGYVLRRILRRAIRNLRLLGAGEERYMHELTAVTIDVMGEQYPELKADAPQI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
              + +E+  F  TL  G  + D  +          L G+ AF+L+DT+G P+D+  ++ 
Sbjct: 355 HGVIDAEEASFLGTLRTGTAIFDVAVEETRRKGKGTLAGEQAFQLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464
             +GL  +D   F + ++EQR RA+A +    +G  +  ++  + EK G  +F+GYD + 
Sbjct: 415 SEQGLK-VDEEGFRRLMKEQRDRAKADAAAKKTGNADISVFGQILEKTGRVEFLGYDQV- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V  ++  G  V  A +G +VEVV  +TPFYAE 
Sbjct: 473 ----------------------TAEAEVIGLLVGGAPVPAAGAGTEVEVVLGRTPFYAEG 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQL D G    DG  ++I DVQ    G+ VH   V  G +R        ID + RR +S
Sbjct: 511 GGQLADQGVIRTDGAEVEIVDVQSPVSGVVVHRGKVRAGEIRVGDQAQAEIDVERRRAIS 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            +H+ATHL+H      LG   +Q GS  +P   RFD T +  +  + L+ +ED VN ++ 
Sbjct: 571 RSHTATHLVHRGFRNALGETAAQAGSENSPGRFRFDFTAAGAVAPSMLRDVEDEVNAVLI 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +L V     ++ +A A GA AL G KY + VR+V V     G +S  LCGGTHVSS+G+
Sbjct: 631 NDLTVNAFHTSQAEARAMGALALFGEKYGETVRIVEV-----GDYSRELCGGTHVSSSGQ 685

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ ++ E+SI AG+RR+EA+ G  A   L  +   +  L+  LK  +  +  R++ I 
Sbjct: 686 LGLVKVLGEASIGAGVRRVEALVGLDAFRFLARESVLVAQLSEQLKARREELPERIDGIV 745

Query: 765 EEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SEVDSKELKSVMDALQK 818
              R  +    K +                 +  V+ ++          +L+ +   ++ 
Sbjct: 746 TRLRAAEKELDKLRSAQVLAMAGEMAAGARDLHGVSVVTRRAPDGTSPDDLRKLALDVRG 805

Query: 819 KI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA---------RLSAKVLGGG 866
           +   +   +++V      +  V+ VV +    R   A  L              K     
Sbjct: 806 RFTGEQPAVVVVAGVPSDRPVVVAVVNDAGRGRGLKAGQLVGVAAKALGGGGGGKDDVA- 864

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    Q GG      D A+  V   + +
Sbjct: 865 ---------QGGGARPEAIDDALVAVEQAIAQ 887


>gi|50954761|ref|YP_062049.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|59798521|sp|Q6AFA1|SYA_LEIXX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50951243|gb|AAT88944.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 885

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/904 (34%), Positives = 475/904 (52%), Gaps = 59/904 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L+FF + GH ++PS+SL+  +DP+L+FT +GMVPF    TG     +   
Sbjct: 1   MQTAEIHRRWLDFFARRGHTVVPSASLV-SDDPSLLFTVAGMVPFVPYLTGIVPAPFPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R      D++ VG+T RH TFF+M GNFSFG YFKE+AI  AWDLLT      
Sbjct: 60  TSVQKCIRT----LDIEEVGKTPRHGTFFQMCGNFSFGDYFKEQAIAFAWDLLTTAETEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D + L++TVY+ED+EA ++W+++SGL+ ++I  +  + N+WS  + GP GPCSEIF
Sbjct: 116 GLGFDPKDLWVTVYEEDDEAREIWRRVSGLAEERIQGLGKDTNYWSTGQPGPAGPCSEIF 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ------QNKQERFILPKMSIDTGMGL 230
           FD+G    G   G + + +RY+EIWNLVFMQF +       + +    LPK +IDTG+GL
Sbjct: 176 FDRGPAY-GIDGGPATDDDRYVEIWNLVFMQFLRGEGTGKDDFEILGDLPKKNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIA 287
           ER+A + Q   N Y+ID  + ++  + ++ G  Y      + V  RV+ DH+RS+  L+ 
Sbjct: 235 ERVAFLKQGVENMYEIDQVRPVLDRAAELAGKPYGNEAHEDDVRLRVVADHVRSALMLMT 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR++RR +    LLG        L P     M +AYPE+       
Sbjct: 295 DGVTPSNEGRGYVLRRLLRRTVRAMWLLGVEAATFPALFPVSRDAMKAAYPEVETEFART 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +   +E+E F +TL  G  +LD  +++  K     L GD AF L+DT+G P+D+  ++ 
Sbjct: 355 SQLAYAEEETFLRTLVAGTSILDTAVANTQKAGKRELAGDTAFLLHDTYGFPIDLTLEMA 414

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL+ +D  +F+  + +QR+RA+A +    +   +   +S     G T F GY  L  
Sbjct: 415 EEAGLS-VDRAAFDTLMADQRARAKADAKAKKTALADLSVYSGLRALGETVFTGYTELET 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                   S V  ++  G    +AV GQ  EV+   T  YAEAG
Sbjct: 474 -----------------------ESSVLGLIIDGHSANKAVEGQVAEVILGATALYAEAG 510

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  DTG  +G G  L + DVQK   G+  H  +V  G +   +     +D   RR    
Sbjct: 511 GQDADTGTIVGPGYVLDVLDVQKPVRGLVSHRVLVRSGEVGVGVPATSLVDADYRRGAKQ 570

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS TH++H AL  +LGS+  Q+GS      LR D + ++ ++      IE+  N  I Q
Sbjct: 571 AHSGTHIIHAALRQVLGSNAHQSGSYNKAGYLRLDFSWNQALSPETRSEIEEISNSAIRQ 630

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NL V TR +   +A A GA AL G KY D VRVV +    GG  S  LC GTHV+ + EI
Sbjct: 631 NLEVTTRELPLAEAKALGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVARSAEI 686

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ +VSESS+ +  RR+E++ G  A   L  +   +  L+S LK  +  +  ++ ++  
Sbjct: 687 GLINLVSESSVGSTNRRVESLVGLEAFKDLAVERTIVSQLSSSLKTPREQLPEKIADLMA 746

Query: 766 EYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVD-SKELKSVMDALQKK 819
             +  +      + +  ++ +        +   V  ++     +  + +L+ +   ++ +
Sbjct: 747 SLKAAEKRIQAFEARAVLDRVQGLLEAVSRRGAVQVVAADAGTLSTADDLRLLAITVRDR 806

Query: 820 IQSGIIMLV-GISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + S    +        K  V++   +   D    A  LA+ +A VLGGGGG G+  +AQ 
Sbjct: 807 LGSDPATVALAALAGGKPVVIVATNQAARDAGVTAGALAKTAAGVLGGGGG-GKADLAQG 865

Query: 878 GGPN 881
           GG +
Sbjct: 866 GGTD 869


>gi|313791987|gb|EFS40088.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313802063|gb|EFS43297.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313838884|gb|EFS76598.1| alanyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314962643|gb|EFT06743.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315077859|gb|EFT49910.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327453294|gb|EGE99948.1| alanyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 892

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 473/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ    G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQCPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|50842658|ref|YP_055885.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289428540|ref|ZP_06430224.1| alanine--tRNA ligase [Propionibacterium acnes J165]
 gi|59798519|sp|Q6A8I8|SYA_PROAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50840260|gb|AAT82927.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289158234|gb|EFD06453.1| alanine--tRNA ligase [Propionibacterium acnes J165]
 gi|313807674|gb|EFS46161.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313818711|gb|EFS56425.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820481|gb|EFS58195.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822713|gb|EFS60427.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825353|gb|EFS63067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|314925090|gb|EFS88921.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314960373|gb|EFT04475.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314978647|gb|EFT22741.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314987967|gb|EFT32058.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314989777|gb|EFT33868.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315084155|gb|EFT56131.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
 gi|315085498|gb|EFT57474.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088445|gb|EFT60421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315105744|gb|EFT77720.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|327331786|gb|EGE73523.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA3]
 gi|328753318|gb|EGF66934.1| alanyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
          Length = 892

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 474/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|295130736|ref|YP_003581399.1| alanine--tRNA ligase [Propionibacterium acnes SK137]
 gi|291377126|gb|ADE00981.1| alanine--tRNA ligase [Propionibacterium acnes SK137]
 gi|313771981|gb|EFS37947.1| alanyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313810181|gb|EFS47902.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313830512|gb|EFS68226.1| alanyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313833548|gb|EFS71262.1| alanyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314973512|gb|EFT17608.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976192|gb|EFT20287.1| alanyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314983786|gb|EFT27878.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|315096059|gb|EFT68035.1| alanyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|327326339|gb|EGE68129.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327445767|gb|EGE92421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448250|gb|EGE94904.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|328760699|gb|EGF74265.1| alanine--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 892

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 473/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L +     + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKAGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|328772364|gb|EGF82402.1| hypothetical protein BATDEDRAFT_32863 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 965

 Score =  749 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/979 (32%), Positives = 479/979 (48%), Gaps = 107/979 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
           +S +R TF+++F+++GH  + SSS IP  DPTLMF NSGM  FK IF G   P       
Sbjct: 7   LSKVRKTFIDYFEQHGHTHVVSSSTIPHGDPTLMFANSGMNQFKPIFLGTVDPNSDLARL 66

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VGR   HHTFFEMLGN+SFG YFK  AI++AW++LTK +
Sbjct: 67  SRAANSQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGNYFKTEAIEMAWEILTKVY 126

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLYIT +  D+        EA  LW+ I G+  D II  +  DNFW M + GPCG
Sbjct: 127 GLPKDRLYITYFGGDKSLGLESDIEAKHLWRNI-GVEEDHIIPGSVKDNFWEMGDQGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +EIWNLVFMQ+ ++  +   +LP   IDTGMGL
Sbjct: 186 PCSEIHFDRIGG-RNAADLVNMDDPDVLEIWNLVFMQYNREVDRSLKLLPNKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRS 281
           ER+ ++LQ+K +NYD D+F  +  A +++TG++          +      +RVI DH+R+
Sbjct: 245 ERLVSILQDKRSNYDTDVFTGIFSAIQKLTGVREYQGRLGEADQDGIDTAYRVIADHVRT 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYPE 339
            +F I+DG +P+NEGRGYVLRRI+RR   YAR             L+  + TEMG A+PE
Sbjct: 305 LTFAISDGGVPSNEGRGYVLRRILRRGARYARKKFNVPIGCFFSSLVDTVVTEMGDAFPE 364

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLP 397
           + +    ++E L  E+  F KTLDRG  L    L+       ++++G  A++LYDT+G P
Sbjct: 365 ITERVDDLKEILDEEERSFSKTLDRGERLFGEYLAKTKASGGKVISGADAWRLYDTYGFP 424

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +    GL  +D + F Q  +  + R+R  +             ++ E       
Sbjct: 425 VDLTRLMAEENGLT-VDEVEFEQEQKIAKERSRGRNEKETGIVVSLDIHAIGE------- 476

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ---KVEVV 514
               L         D +           + +SS VKA+   G+ VE   S     +  V+
Sbjct: 477 ----LEANPNVQPTDDQYKY------GFDDISSKVKALFVNGKFVESVSSTNHQGRFGVI 526

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQ  DTG    DG     I DVQ    G  +H   ++ G L  + S++ 
Sbjct: 527 LDKTNFYAEQGGQQFDTGSLTVDGSLEFAIEDVQ-VFGGYVLHIGYLKYGSLSLDDSIMC 585

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA--- 630
           T D   R  L  NH+ATH+L++ L +++G+ V Q GS ++P+ LRFD +           
Sbjct: 586 TYDELRRWPLRNNHTATHVLNYGLRSVIGTIVDQKGSLVSPEKLRFDYSCKVNKCFEYNI 645

Query: 631 ----------ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
                     EL  +E   N  IA+N  + T  ++   A + +G  A+ G  Y D VRVV
Sbjct: 646 YSRRKIGLTAELAKVEKITNSFIAKNDIIYTSEVSLALAKSINGLRAVFGEVYPDPVRVV 705

Query: 680 SVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+ +                 S   CGGTHV  TG+I    I+ +S++  GIRRI  +TG
Sbjct: 706 SIGFPIDEMLKDPSNAKWAETSIEFCGGTHVQRTGDIKRFVIIEDSALAKGIRRIVGVTG 765

Query: 729 QRARSHLMGQDE------------------KLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             A  +    DE                   LK +   L  S   V+ +   + E +  +
Sbjct: 766 DEALKYQKLADEFEIKLEQLRRIKGALFETTLKEIGKTLDSSVLPVLRK-HSLKETFSAI 824

Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKI 820
                    A++ L+      +     + N     F+S I    ++K L   +  ++   
Sbjct: 825 KKDFDDKDKARKALESKEAVDTVKSFFEANPEKTVFVSVINQSGNTKALAQAIAHVRTLK 884

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               +++    +  K +   +V + L+DR   A + A   A  +GG  GG     AQ  G
Sbjct: 885 DKAAMLIAVDPETSKVAHQCIVPQILIDRGLKATEWADAVASKVGGKKGG-SESAAQGAG 943

Query: 880 PNGNKADQAIAGVASFLKK 898
                  +A+    +F+ K
Sbjct: 944 DRAASVQEAVDAATAFIAK 962


>gi|108804197|ref|YP_644134.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
 gi|122381811|sp|Q1AWA6|SYA_RUBXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|108765440|gb|ABG04322.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941]
          Length = 882

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/920 (34%), Positives = 476/920 (51%), Gaps = 74/920 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL+FF +  H + PSSSLIP +DPT++ T +G+  F   F GQEKP +  
Sbjct: 4   MKS-AEIRRRFLDFFAERDHRIYPSSSLIPHDDPTVLLTTAGVQQFIPYFLGQEKPPHPR 62

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             +VQKC R      DL+ VG    H TFFEMLGNFSFG YFK+ AI  AW+ LT+   +
Sbjct: 63  AASVQKCFRTQ----DLEEVG-DPSHLTFFEMLGNFSFGDYFKKEAIGWAWEFLTEGLGI 117

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCS 173
              RL++T+++ DE      EA + W ++ G+   KI  +  ++N+W    ETGPCGPCS
Sbjct: 118 PPERLWVTIFEGDENAPEDLEAKRFWMEV-GVPEHKIFGLPKSENWWGPAGETGPCGPCS 176

Query: 174 EIFFDQGECIPGGLP--------GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           EI++D GE    G P        G  E   R++E+WNLVF Q+EQ        L +  ID
Sbjct: 177 EIYYDYGEEFGPGDPLEDARYGPGGEEGDARFLEVWNLVFNQYEQLRDGSLRPLEQTGID 236

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSS 283
           TGMGLER+A V+Q   + Y+ DL+  +I+ + + TG+            R++ DH R  +
Sbjct: 237 TGMGLERIAAVMQGARSVYETDLYAPVIERAREYTGVALGDGEETDRALRILADHARGMA 296

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           FLIADG+ P N+ R YVLRRI+RRA   A    G     +  L   +   MG  + EL +
Sbjct: 297 FLIADGVRPGNQRREYVLRRIIRRATREAYGRFGLDAGRIASLAETVADYMGGFWGELRE 356

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
           A+  I   + SE  RF      G+ LL+  +S L +     G+VAF L+DT+G P+++ +
Sbjct: 357 ARDEIRRVVESEAARFIDIYHSGMRLLEAEISRL-EGGRFPGEVAFTLHDTYGFPVEVTR 415

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++L  RG++ +D   F +A+E QR RAR    G      E+   + +++   ++F+GY+ 
Sbjct: 416 EVLAERGIS-LDEAGFRRAMERQRERAREALEG-----HERAVAAFRDREIRSRFVGYE- 468

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + + AI    E V +A    ++ +V ++ PFYA
Sbjct: 469 ----------------------REQAETRILAI----EPVPDAEG--ELYLVLEENPFYA 500

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
             GGQ+ DTG    +  +L++ D    A    V  A VERG       +V +I+   R+Q
Sbjct: 501 TGGGQVADTGWISSEKGQLEVVD-AIPAGDYQVLRARVERGRFEAGDEVVASINRVRRQQ 559

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATH+LH AL  +LG  V Q GS + PD LRFD  +S  +T  EL  +++     
Sbjct: 560 IEANHTATHILHWALRAVLGKEVVQAGSYVGPDRLRFDYRYSGRVTEEELARVQELCLLK 619

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I +N PV       E+A   GA  L G KY + VRVV V+       S  LCGGTHV  T
Sbjct: 620 ITENQPVRYYTTTLEEARKLGAIMLFGEKYGELVRVVEVDG-----FSRELCGGTHVRGT 674

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVE 761
            EI    I S     A + RIE ITG+ A  +L    E  + LA+ L++     +   V 
Sbjct: 675 AEIGAFKITSNRRHGADLYRIEVITGREALYYLTRAAETAERLAAELRLPGVEELPEAVS 734

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + EE ++ +    ++ L+  +E++     +   I     ++  ++  D ++L+ + D +
Sbjct: 735 RLREELQQAREELRQQALKRGLEEVGSLVENAESIDGTKVVTGRVAAADVRDLRQISDDV 794

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           + ++   + +++    + KA ++     ++  R  A D+ R +A +LGGGGG G P MAQ
Sbjct: 795 RNRVGGPVAVVLAADLDGKAVLVANFHPEVSKRVKAGDVVREAAGILGGGGG-GSPTMAQ 853

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG N      A+  V   L
Sbjct: 854 AGGGNLEAIPAALERVRQIL 873


>gi|17506981|ref|NP_491281.1| Alanyl tRNA Synthetase family member (ars-2) [Caenorhabditis
           elegans]
 gi|74955985|sp|O01541|SYAC_CAEEL RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=AlaRS A; AltName: Full=Alanine--tRNA ligase
 gi|1938531|gb|AAB52339.1| Alanyl trna synthetase protein 2 [Caenorhabditis elegans]
          Length = 968

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/974 (29%), Positives = 455/974 (46%), Gaps = 97/974 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P     
Sbjct: 5   TASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLA 64

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT 
Sbjct: 65  KLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY++V+  DE        EA  +W+ + G+  ++I+     DNFW M + GP
Sbjct: 125 VYGIPAERLYVSVFGGDEANGVPADSEARDIWRSV-GVPDERILNFGMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   ID G+
Sbjct: 184 CGPCSEIHYDRI-GNRDASHLVNADDPMVVEIWNLVFIQFNREEGGVLKPLPAKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHL 279
           GLER+  V+Q+KT+NYD D+F+ + +A  + +G++          +    + +RV+ DH+
Sbjct: 243 GLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVVADHV 302

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P + + +G  +P
Sbjct: 303 RTLTIALSDGGRPDNSGRGYVLRRILRRGVRYASEKLNAQPGFFASLVPVVISILGETFP 362

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLP 397
           EL +  + + + +  E+++F KTL RG VL    +  L +      GDV+++LYDT+G P
Sbjct: 363 ELSRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVQSLPEGTMTFPGDVSWRLYDTYGFP 422

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ Q +   +GL+ +D  +F +A    R +A   S        + +   +   +   + 
Sbjct: 423 ADLTQLMAEEKGLS-VDNTAFEEA----RRKAIETSSAGTGKFRDTLDLDV---HALAEL 474

Query: 458 IGYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
               +       K       +    +         + AI + G+ V++  +G++  ++ D
Sbjct: 475 QQKGVPTTDDSPKYAYTFTGEGSDAVYKFEPCVGKILAIRRDGKFVDQLAAGEEGAILLD 534

Query: 517 QTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +T FYAE GGQ+ D G       +     +++ Q    G ++       G       +  
Sbjct: 535 RTNFYAEQGGQIYDVGVLTKVNDESNEFNVSNCQ--VRGGYIVLVGSAEGSFSVGDQVNE 592

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   ++ +  NH+ TH+L++AL  +L     Q GS + PD +RFD T+   +T  ++K
Sbjct: 593 RFDEDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVAPDRMRFDFTNKAGMTVQQVK 651

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+    +I     V  +     +A    G  A+    Y D VRVV+V           
Sbjct: 652 KAEEYAQQLIDTKGQVYAKNSPLGEAKKVKGLRAMFDETYPDPVRVVAVGTPVEQLLQNP 711

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             E+G   +   CGGTH+ +   I  + I SE +I  GIRRI A+TG  A   +   D  
Sbjct: 712 DAEEGQNTTVEFCGGTHLQNVSHIGRIVIASEEAIAKGIRRIVALTGPEAERAIARADRL 771

Query: 742 LKSLASFLK--VSQGNVV----------GRVEEIWEE----------------------- 766
              L    K    +  ++           +++EI +E                       
Sbjct: 772 TARLEEESKHADKKDELLANKDKFKALQKKIQEIVDEANGAQLPYWRKDSIREKAKAIQK 831

Query: 767 ----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
               Y K Q      K+    ++L+         +    +  +SK + + +  L+     
Sbjct: 832 TLDGYTKAQQAAVAEKVLGEAKELAAVAEQPTVLVHVFAANANSKAIDNALKLLKDT--K 889

Query: 823 GIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            ++         K   L  V + L+ +   A +       VL GG GGG+   AQ  G N
Sbjct: 890 AVMAFSVNEDSGKVLCLAKVDKSLVSNGLKANEWVNEVCTVL-GGKGGGKDANAQLTGEN 948

Query: 882 GNKADQAIAGVASF 895
            +K D A+     F
Sbjct: 949 VDKLDAAVELAQKF 962


>gi|156839933|ref|XP_001643652.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114272|gb|EDO15794.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 956

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/947 (30%), Positives = 466/947 (49%), Gaps = 93/947 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TAAVVRNTFLDYFKSKEHKFVRSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPSSEFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTQV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++ DE        EA +LW+ + G+  D I+     DNFW M E GPC
Sbjct: 130 YSIPADRLYVTYFEGDEKQGLEPDHEARELWRSV-GVPDDHILPGNAKDNFWEMGEQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +E+WNLVFMQ+ ++  +    LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGGRNAAH-LVNQDDPDVLEVWNLVFMQYNREQDRSLKSLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F+ L +A +++  ++                 +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFQPLFKAIQEIANVRPYTGKFGAEDVDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L+P L  ++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSRLMPTLIEQVKDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  L +   +     + + L+G   ++LYDT+G 
Sbjct: 368 EVAKDPSFVAEILDEEEASFSKTLDRGEKLFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L +      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDNSDLLKLNVHELSQ------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                       + E++            + V   +  +    + V+E    G+K  ++ 
Sbjct: 481 ------------LNEEKIAKSDDSSKYGFDNVDGTILKLYDGEQFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D T FYAE GGQ  DTG  I D +    + +VQ    G   H   +  G L     ++  
Sbjct: 529 DNTCFYAEQGGQEYDTGKIIIDDVAEFNVENVQ-LYNGYVFHTGSLVEGKLSVGDKIIAA 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L++AL   LG+ V Q GS + P+ LRFD +H K ++  EL++
Sbjct: 588 YDELRRHPIKNNHTGTHILNYALKETLGNDVDQKGSLVAPEKLRFDFSHKKALSLDELRN 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +E+  N  I  N+ V  + +  + A   S   A+ G  Y D VRVVSV            
Sbjct: 648 VEEVCNQQIKDNMAVYYKEVPLDLAKTISSVRAVFGETYPDPVRVVSVGKPIDEILANPS 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
            E+   +S   CGGTHVS TG+I    I+ ES I  GIRRI A++G  A           
Sbjct: 708 NEEWNKYSIEFCGGTHVSKTGDIKYFIILEESGIAKGIRRIVAVSGTDAFEAQRIANEYE 767

Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       + +  +  +  +I +  +      AK 
Sbjct: 768 SELESTEKLPFSPLKEKKLKELGVQLGQLSISVIKKNELKEKFTKIEKSVKDEVKSRAKL 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKE 833
           + +  ++++  H   +      + HI    ++K +   +  ++ K +   I L+ G   E
Sbjct: 828 ETKQVLDEVKEHFTENTESLFLVKHIDIPPNAKAITEAIAHIKTKNKDKTIYLLTGNDPE 887

Query: 834 KKASVLIVVTE-DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            + +    +++  +    +   LA+  +  + GG  GG+ ++ Q  G
Sbjct: 888 GRVAHGCFISDVAISKGVDGAALAKKVSASI-GGKAGGKGNVFQGMG 933


>gi|321477760|gb|EFX88718.1| hypothetical protein DAPPUDRAFT_191289 [Daphnia pulex]
          Length = 987

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/984 (31%), Positives = 478/984 (48%), Gaps = 110/984 (11%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
           + + IR  +++FF +K  H  + SSS IP +DPTL+F N+GM  FK +F G   P     
Sbjct: 6   SAAKIRQMYMDFFIEKKSHIYVHSSSTIPKDDPTLLFANAGMNQFKPLFLGTVDPNSDMS 65

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT 
Sbjct: 66  KWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCTWAWELLTD 125

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            F L + RLY+T +          DEE  ++W  + GL A++I+  +  DNFW M + GP
Sbjct: 126 VFQLPKDRLYVTYFGGNENAGLQPDEECRQIWLSL-GLPAERILPGSMKDNFWEMGDVGP 184

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI FD+           + +    +EIWNLVFM F ++       LP+  ID GM
Sbjct: 185 CGPCSEIHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFMTFNRETDSSLKPLPRKHIDCGM 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +V+Q+K +NYD D+F+ + +A ++ T                  + +RV+ DH 
Sbjct: 244 GFERLVSVIQDKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGAEDVNGVDMAYRVLADHA 303

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRR++RR + YA   L         L+P +C  +G  +P
Sbjct: 304 RTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQVLGPTFP 363

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +   L+ + +  E+ +F KTL RG  LL+  +S L     L GDVA++LYDT+G P+
Sbjct: 364 EVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRLYDTYGFPV 423

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ Q +   +GL+ ID++++ +A    + +A+  S G GSG  + I F +   +  T+  
Sbjct: 424 DLTQLMSEEKGLS-IDMVAYEEA----KKQAQLLSQGKGSGVDDTIAFDV---HAITELQ 475

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDL-TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
              +       K + K +          +  +S V AI  Q    EE  SG +  ++ D+
Sbjct: 476 NKGVPPTDDSFKYNYKSVSDAVDSPYEFDVCTSKVIAIRFQKAFHEEVSSGVECGILLDR 535

Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           T FYAE+GGQ  D G       +G    + +VQ +  G  +H   VE G LR    + L+
Sbjct: 536 TSFYAESGGQAYDEGFITKIGDEGTEFTVKNVQVR-GGYVIHLGNVE-GTLRVGDEVKLS 593

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID   RR +  NH+ TH+L++AL  ++G+   Q GS + PD +RFD T+   +T  ++K 
Sbjct: 594 IDQSRRRLIMSNHTGTHVLNYALRQVVGNEADQRGSLVAPDRMRFDFTNKAAMTVDQVKQ 653

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY---------- 683
            E   N++I +N  V  +  +   A A  G  A+    Y D VRVVS+            
Sbjct: 654 TERIANEMIRKNQEVYAKESSLVVAKAVQGLRAVFEETYPDPVRVVSIGIPVEQLEADPA 713

Query: 684 -EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
              G   S   CGGTHV  +G I    I +E +I  GIRRI AITG  A   L   D   
Sbjct: 714 NPAGNSTSIEFCGGTHVKRSGHIGDFVISAEEAIAKGIRRIVAITGPEASKALKKADLLQ 773

Query: 743 KSL-ASFLKV-----------SQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLN 782
           K + A   KV           S   +   + ++ ++        ++K  L +  + L+  
Sbjct: 774 KEVDAVSAKVDAFVSQNDKTLSVKELSRIIVDLSDDVSQANIAYWKKDDLRNILKGLKKR 833

Query: 783 VEDL-SCHKIADVNFMS-----HIISEV-------------DSKELKSVMDALQKKIQSG 823
            +D+    K A VN ++      +  +V             +SK L   +  ++      
Sbjct: 834 ADDVERAIKAAVVNDVAEAAKKLVAEQVNTPFIVHEFNAFSNSKALDGALKQVKSLSPET 893

Query: 824 IIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH-------- 873
             +   +  E  K  VL    +   DR   A +     + +L                  
Sbjct: 894 AAIFFSVDAEANKIVVLAAAPKGANDRGLKANEWVADVSALL---------DGKGGGSAG 944

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
            AQ+ G N     +A+    +F +
Sbjct: 945 SAQATGNNPAGLAEAMKKAKAFAQ 968


>gi|314966609|gb|EFT10708.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
          Length = 892

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/926 (32%), Positives = 474/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGASVSAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G K    VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKSPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|313812791|gb|EFS50505.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
          Length = 892

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 474/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEACEAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|327443563|gb|EGE90217.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
          Length = 892

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 473/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++     V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKAPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|327330410|gb|EGE72159.1| alanine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 892

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 473/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA   GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKVMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|315080484|gb|EFT52460.1| alanyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
          Length = 892

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/926 (32%), Positives = 473/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGKKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L +     + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKAGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  MAQ  G +    D A+  V + L
Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889


>gi|212550874|ref|YP_002309191.1| alanyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549112|dbj|BAG83780.1| alanyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 872

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/920 (34%), Positives = 474/920 (51%), Gaps = 74/920 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR +F ++F+   H+++ SS +I  NDPTLMFTN+GM  FK++  G     Y  +
Sbjct: 1   MTAKKIRQSFKDYFENKNHKIVSSSPMIIKNDPTLMFTNAGMNQFKDVILGNALVKYTRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQKC+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+ LT+   LD
Sbjct: 61  ANVQKCLRVNGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEYAWEYLTEILKLD 120

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           + RLY+T+++         D EA   W K   L    II     DNFW M   GPCGPCS
Sbjct: 121 KDRLYVTIFEGNSSEKLERDNEAANYWGKY--LPKSHIIDGNKKDNFWEMGNMGPCGPCS 178

Query: 174 EIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI      D+       L   ++   + IEIWNLVFMQF ++       LP+  IDTGMG
Sbjct: 179 EIHIDIRSDEEREKVDSLTLINKNHPQVIEIWNLVFMQFNRKIDGSLENLPQKVIDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIA 287
            ER+  V+Q K +NYD D+F+ +IQA   +T   Y  N+   +  RV+ DH+R+ +F IA
Sbjct: 239 FERLCMVVQGKASNYDTDVFQTIIQAISTITKFSYGQNSQRDIAIRVVADHIRTIAFSIA 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG LP+N   GYV+RRI+RRA+ Y+   L      +  L+P+L   MG  YPELI  K +
Sbjct: 299 DGQLPSNTKAGYVIRRILRRAVRYSYTFLEQKRAFIYRLIPSLVDSMGEVYPELIAQKKM 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
           +++ ++ E+  F +TL+ G  LL+  +  +       +NG   F LYDT+G PLD+++ I
Sbjct: 359 MQKVIKEEENSFLQTLEIGTKLLNKKIQEAKTKNKTTINGVDVFILYDTYGFPLDLIKLI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           L  + +   D  SF+  + +Q+ RAR       +      W  L+E  G TQF+GYD + 
Sbjct: 419 LHEQNMKM-DKASFDAEMSKQKERARNA-----TTIETGDWIVLQE--GDTQFVGYDTIT 470

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +   RKV  +                              +  ++V D+TPFYAE 
Sbjct: 471 TQARILRCRKVKQKNT----------------------------EYYQIVLDKTPFYAEM 502

Query: 525 GGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ+GD+G  I  +GI + I D  K    + +H  I+ +       +    +D + RR  
Sbjct: 503 GGQIGDSGQLIDSNGISISIIDT-KCENNLVIH--IINQLPENLYDTFNAEVDARKRRAT 559

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NH+ATHLLH AL  +LG+HV Q GS ++ + LRFD +H K +T  E++ +E  +   I
Sbjct: 560 ECNHTATHLLHEALRLVLGTHVEQKGSYVSSEVLRFDFSHFKKVTEKEIRQLEKIITKKI 619

Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            QN+ +   R +   +A   GA AL   KY + VRV+          S  LCGGTH +ST
Sbjct: 620 RQNIALEEKRHIPLVEARRLGAIALFYEKYEENVRVIKFGS------SIELCGGTHTTST 673

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I    I+SE SI AGIRRIEAIT ++  S    Q + + +    L     +++  +++
Sbjct: 674 GYIGNFRIISEFSISAGIRRIEAITAEKVESFFYAQQDIIHNAKMLLN-HTSDLLQSIKK 732

Query: 763 IWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817
           +  E    +K    + + K       +   K    + ++  I E    +  +K +   + 
Sbjct: 733 LISENILLKKQVETYNREKTIFIKNQVIKTKKQTPSGINLFILEGFFPASIVKDIAFQIG 792

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            +             E K  + I+++ DL+    NA  + R ++K++  G GGG+ H A 
Sbjct: 793 SEFTEKSYFAAATVAEGKPLLTIMISNDLVKNGLNASQIVREASKIIK-GNGGGQSHFAT 851

Query: 877 SGGPNGNKADQAIAGVASFL 896
           +GG + N    A+  + + +
Sbjct: 852 AGGKDINGLPMALKEILNKV 871


>gi|45188236|ref|NP_984459.1| ADR363Cp [Ashbya gossypii ATCC 10895]
 gi|44983080|gb|AAS52283.1| ADR363Cp [Ashbya gossypii ATCC 10895]
          Length = 956

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/975 (30%), Positives = 462/975 (47%), Gaps = 111/975 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              ++R+TF+++F+   H+L+PSS +IP +DPTL+F N+GM  FK IF G   P      
Sbjct: 10  TAQNVRSTFIDYFKAKDHKLVPSSPVIPYDDPTLLFANAGMNQFKPIFLGMVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG  + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 70  LKRAVNTQKCIRAGGKHNDLEDVGLDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTKV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T ++ DE        EA  LW  + G++ D +I     DNFW M + GPC
Sbjct: 130 YGLPEDRLYVTYFEGDESLGLAADEEARDLWLSV-GVAPDHVIAANVKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ FD+           +++    IEIWN VF+QF +++      LP   +DTGMG
Sbjct: 189 GPCSEVHFDRIGGRNAAA-LVNQDDPNVIEIWNNVFIQFNREHDGSLRPLPAKHVDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F+ L    +++TG++                 +RV+ DH+R
Sbjct: 248 FERLVSVLQDVPSNYDTDVFQPLFARIQEITGVRPYSGKFGADDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +  +ADG +P N+GRGYVLRRI+RR   Y R      T      L P L  +    YP
Sbjct: 308 TLTIALADGGVPDNDGRGYVLRRILRRGARYVRKYMNYPTGKFFSQLAPTLIEQFKDVYP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           EL + +  + + L  E+  F KTLDRG  L +           +IL+G   ++LYDT+G 
Sbjct: 368 ELTKNQSYLFDILDEEEASFAKTLDRGEKLFEKYAETAKNSGSKILDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +    GL  +D   F QA +E    ++ +                    G   
Sbjct: 428 PVDLTQLMADEHGLK-VDNEGFEQAKQESYEASKKNGSK-----------------GDAN 469

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
            I  ++   S+   E              + + + +  I      VE+    G++  ++ 
Sbjct: 470 LIKLNVHEVSQLSDEGVPRTDDSAKYGTQD-IEATILRIHDGENFVEQMTEVGKQYGILL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAE GGQ  D G  + D       D  ++  G   H   +  G L     ++ + 
Sbjct: 529 DRTCFYAEQGGQEYDKGKLVIDDAAEFNVDNVQQYSGYVFHTGNLADGKLCVGDKIIASY 588

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  +  NH+ THLL+HAL TILG ++ Q GS +TP+ LRFD +H KP++  EL+ +
Sbjct: 589 DELRRYPIRNNHTGTHLLNHALRTILGDNIDQRGSLVTPEKLRFDFSHKKPMSYEELEQV 648

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVE-----------Y 683
           E   N  I +N  V  + +  + A +     A+ G  Y D VRVVSV             
Sbjct: 649 ETICNQQIRENRSVYYKDIPLDVAKSIHSIRAVFGETYPDPVRVVSVGKSVDEILESPSN 708

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           E+   +S  LCGGTHVS TG+I    I+ ES I  GIRRI A++   A        E   
Sbjct: 709 EEWAKYSIELCGGTHVSKTGDIKEFVIIEESGIAKGIRRIVAVSASEAYEVQRVAREFAL 768

Query: 744 SLASFLKVS-------------------------QGNVVGRVEEIWEEYRKLQLIHAKRK 778
            L +  K+                          +  +  +  ++ +  +      AK++
Sbjct: 769 ELDAIDKLPFSMIKEKKIREIGVRLDQLNISVITKNELKTKFTKMEKAVKDEVKTKAKKE 828

Query: 779 LQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEK 834
           ++  ++ +  +  A+ +   F+  +    + K +   +  L+   +   I L  G   E 
Sbjct: 829 MKQTLDAVKEYFAANEDATFFVKSLDISANPKAVTEAVQYLKNSARDKTIYLFTGNDPEG 888

Query: 835 KASVLIVVTED-LLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGPNGN 883
           K +    +++D L    +   LA++ +            +            Q  G    
Sbjct: 889 KVAHGCFISDDALAKGIDGPALAKVVSSKIGGKAGGKGNVF-----------QGMGDKPA 937

Query: 884 KADQAIAGVASFLKK 898
             D AIA V +  K+
Sbjct: 938 GIDSAIAEVEASFKE 952


>gi|121719583|ref|XP_001276490.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119404702|gb|EAW15064.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 961

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/970 (32%), Positives = 489/970 (50%), Gaps = 97/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R TFL+FF+KNGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 12  TARRVRDTFLDFFRKNGHTFVPSSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAR 71

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK 
Sbjct: 72  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKV 131

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +D +RLY+T ++  E        EA  LW  + G+  D I+     DNFW M + GPC
Sbjct: 132 YGIDPQRLYVTYFEGHEEGGLEPDLEAKALWTAV-GVPEDHILPGNMKDNFWEMGDQGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 191 GPCSEIHYDRIGGRNASH-LVNQDDPNVLEIWNNVFIQYNRETDRTLRPLPNKHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L  A + +TG +                 +RV+ DH+R
Sbjct: 250 FERLVSVLQDKSSNYDTDVFSPLFGAIKDITGAREYRGMFGSGDADGIDTAYRVVADHVR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG+ P ++GRGYV+RR++RR   YAR     E       L+P L  ++G  +P
Sbjct: 310 TLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKLVPILVDQLGEMFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     + L  ++ L+G   ++LYDT G 
Sbjct: 370 ELRKKQQDVMEILDEEEISFAKTLDRGERQFESYAQQAKLKGNDKLHGADVWRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID   F +A    R +A+  S G     T+ +   + +      
Sbjct: 430 PVDLTRLMAEERGLK-IDDTEFEEA----RLKAKEASKGQKKSATDTVKLDVHD------ 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEV 513
                     K  K +               +++ VKAI        +     +G+++ +
Sbjct: 479 --------LGKLEKMNDVPKTDDSFKFEMCNINAEVKAIYHGKVFHSDTAVISAGEQIGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  D G  I DG   L+++DVQ    G  +H   ++ G      +++
Sbjct: 531 ILDRTNFYAEQGGQENDIGRIIIDGKAELEVSDVQ-LYAGYVLHTGFMKYGSFSVGDTVL 589

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  EL
Sbjct: 590 CEYDELRRWPIRNNHTGTHILNFALKRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKEL 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVS----------- 680
           + IED   + I QN  V ++ +    A    G  A+ G  Y D VRVVS           
Sbjct: 650 ERIEDISTEYIRQNCDVYSQEVPLATARQITGVRAVFGETYPDPVRVVSVGVEVEEILQN 709

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736
           V+       S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A         
Sbjct: 710 VKDPRWNEVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHRVQQVATD 769

Query: 737 ---------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEY----RKLQ 771
                           ++++ K +   L       V +  +  R   I ++     + LQ
Sbjct: 770 FAKRLDRLDAMPLGPQKEQEAKQVQVELNQLSISAVQKSRLRERFAAINKKVIDGQKSLQ 829

Query: 772 LIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGII-MLVG 829
            + +K+ L          + ++ +  ++ +    ++K +   ++ ++ K+Q   + +L  
Sbjct: 830 KLESKKALDAITSYFEAPENSEKSWLVTRLPISANAKAVSESLNFVKSKLQDKTVYVLAA 889

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S++ + +    V++ ++D   +A D A   +  +GG  GG  P      G + NK ++A
Sbjct: 890 DSEQGRVAHGCYVSKAMIDQGASANDWAATVSGAVGGKAGGKGPTS-IGNGVHPNKVEEA 948

Query: 889 IAGVASFLKK 898
           IA  + +L K
Sbjct: 949 IALASDYLSK 958


>gi|239622020|ref|ZP_04665051.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515211|gb|EEQ55078.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 893

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/927 (34%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+    AV+G   VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 ITRSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   
Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGGG G+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGGG-GK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|23334993|ref|ZP_00120231.1| COG0013: Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|23465456|ref|NP_696059.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|189439479|ref|YP_001954560.1| alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|227545932|ref|ZP_03975981.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|322688960|ref|YP_004208694.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690929|ref|YP_004220499.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|41018234|sp|Q8G5W9|SYA_BIFLO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|23326108|gb|AAN24695.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|189427914|gb|ACD98062.1| Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|227213566|gb|EEI81415.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517003|emb|CBK70619.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum F8]
 gi|320455785|dbj|BAJ66407.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460296|dbj|BAJ70916.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 893

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/927 (34%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+    AV+G   VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   
Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGGG G+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGGG-GK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|315655398|ref|ZP_07908298.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490338|gb|EFU79963.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 895

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/930 (33%), Positives = 483/930 (51%), Gaps = 68/930 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  +L+FF KNGHE+ PS  LI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEVRQRWLDFFAKNGHEVRPSVPLISP-DPSILFTIAGMVPFIPYIVGTEPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  +L++T++++DE A+ +W +  GL    + ++   + FW   + GP GPC+EI 
Sbjct: 116 GYGLDGDKLWVTIWEQDEAAWDIWTRQIGLDPAHVQKLPREEIFWDTGQPGPAGPCAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKM----SIDTGMGL 230
            D+G    P G P    +G+RY+E+WNLVF +F +     + + L       +IDTG+GL
Sbjct: 176 LDRGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIA 287
           ER+A VLQ K N Y+ID    +I A++ ++G +Y  +     V+ R++ DH+RSS  LI 
Sbjct: 236 ERLAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG +E +M  LLPA    M ++YPEL +    I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILC 406
            E   +E++ F +TLD G V+LD  ++   +    L+GD AF+L+DT+G PL +  +I  
Sbjct: 356 SEVAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
             G+  +D   F + + EQ+ RARA ++   +G  +  ++  L  K G     +F+GY  
Sbjct: 416 EAGVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY-- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 473 ---------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G      G  L + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  ++K +  + +  IE   N+
Sbjct: 572 AIARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  N+ V    M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  
Sbjct: 632 RVQTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  + ++ ESSI +G+RRIEA+ G  A      +   +  +   +      +V R+ 
Sbjct: 688 TGHIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + +  +  +    K +L   + +L         +  V  +  +       +L+     L
Sbjct: 748 SLMDRLKVAEKELEKTRLAALLSNLDDYAKSAETLCGVQIIHQVAPAGSVDDLRQAATTL 807

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
           + +  +    ++ L  +  E K  +++ V E   ++   A  L +  A  +GGGGG G+ 
Sbjct: 808 RARFSNANPAVVALAAVIGE-KPMLVVAVNEAAREKGVKAGALVKAGAAAMGGGGG-GKD 865

Query: 873 HMAQSG----GPNGNKADQAIAGVASFLKK 898
            +AQ G    G      +  +  + + L K
Sbjct: 866 DLAQGGGAPAGKPETGLNALVDTLRTILAK 895


>gi|291229512|ref|XP_002734712.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 974

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/975 (31%), Positives = 479/975 (49%), Gaps = 96/975 (9%)

Query: 7   IRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           IR  F++FF+      HE +PS+S++P +DPTL+FTN+GM  FK IF G   P      +
Sbjct: 8   IRQGFIDFFRNKKGLEHEFVPSNSVVPLDDPTLLFTNAGMNQFKPIFQGVVDPNSDMAKW 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   ++AW+LLT  +
Sbjct: 68  VRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCEMAWELLTDVW 127

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T +          DEE  ++W  I GL  ++++  +  DNFW M + GPCG
Sbjct: 128 KLPKERLYVTYFGGDEKMGLGPDEECKQIWIDI-GLPPERVLPFSMRDNFWEMGDVGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +E+WNLVFMQF ++       LPK +ID GMGL
Sbjct: 187 PCSEIHFDRIGG-RDATHLVNMDDPNVLELWNLVFMQFNREPDGSIRPLPKKNIDCGMGL 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F     A  + TG++               + +RV+ DH+R+
Sbjct: 246 ERVISVLQGKMSNYDTDIFTPFFDAIHKGTGVREYQGKVGSEDTDGIDMAYRVVADHIRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  I+DG  P N GRGYVLRR++RR + YA   L         L+  +   +G A+P +
Sbjct: 306 LTIAISDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAPSGFFASLVQVVLDTLGDAFPGI 365

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +   L+ + +  E+ +F KTL+RG  +L   ++ L + ++L G  A+ LYDT+G P+D+
Sbjct: 366 KKDPQLVIDIINEEEAQFLKTLNRGHRVLQRTINKL-ETKVLPGKAAWLLYDTYGFPVDL 424

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +    GL  ID+    +  ++++ R    S G GSG  + I   +   +  ++    
Sbjct: 425 TQLMAEENGL-NIDM-GEYEEEKKKKLRF-LLSQGKGSGVDDTIGLDV---HAISELQDT 478

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
             +  +    +      ++    + N + + V A+ +  + V E  +G +  ++ D+T F
Sbjct: 479 RKVSATDDSPKYSYTYDEQNSKYVFNAIVATVIALRKDKQFVSEVDNGDECGMLLDKTCF 538

Query: 521 YAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIV----ERGILRTEMSLVL 573
           YAE GGQ+ D G    +    I  ++T+VQ K  G  +H   +      G L+    + L
Sbjct: 539 YAEQGGQIWDEGFMEKENNPDIEFKVTNVQVK-GGYILHIGKLSAVDSEGKLKVGDKMKL 597

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ TH+L++AL  +LG    Q GS + PD LRFD T    +T+ +++
Sbjct: 598 YIDEARRRPIMSNHTGTHMLNYALRKVLGE-ADQKGSLVAPDKLRFDFTAKGAMTTEQVQ 656

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
           S E   N+++ ++ PV  +      A A  G  A+    Y D VRV+S+           
Sbjct: 657 SAEQITNEMVQKSQPVYAKNSPLAVAKAIQGLRAVFDEVYPDPVRVISIGIPVEDMEADP 716

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---Q 738
               G   S   CGGTH+ ++G I    IV+E +I  GIRRI AITG  A+  +      
Sbjct: 717 SGPAGATTSIEFCGGTHLLNSGHIGPFVIVTEEAIAKGIRRIVAITGDDAQKAINRADML 776

Query: 739 DEKLKSLASFLKVS-------QGNVVGRV---------------------------EEIW 764
           +E++  L   +K +          +   +                           ++I 
Sbjct: 777 EEEIDKLTQKIKDNSTKQVYMPKELSKEIVSIGDDLNVAIVPQWRKDGMRKKLKDLKKIM 836

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           ++  K +     + ++   + L   K      +  + ++ +SK L + +   +       
Sbjct: 837 DDLDKARKAAIIQNVKEMTKKLIEEKPNQPLVVMTLDADSNSKALDAALKEYRNLSPQTA 896

Query: 825 IMLVGISKEK-KASVLIVVT-EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            ML  + +E  K   L  V  E +     A +  R  +  L  G GGG+   AQ+ G N 
Sbjct: 897 AMLFSVDRENRKIICLCHVPQEGIAKGLKAGEWVRHVSSSLN-GKGGGKDSSAQASGDNI 955

Query: 883 NKADQAIAGVASFLK 897
           N  D+A      F +
Sbjct: 956 NGLDEASKLAKEFAE 970


>gi|312069509|ref|XP_003137715.1| alanyl-tRNA synthetase [Loa loa]
 gi|307767125|gb|EFO26359.1| alanyl-tRNA synthetase [Loa loa]
          Length = 967

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/974 (31%), Positives = 455/974 (46%), Gaps = 94/974 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               IR TF+ FF+   H  + SSS+IP +DPTL+F N+GM  +K IF G  +P      
Sbjct: 5   TCDEIRATFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSSEMAK 64

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+LLTK 
Sbjct: 65  LKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWELLTKV 124

Query: 118 FDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   RLY++ +  D        EE  ++W  I G+    I+     DNFW M + GPC
Sbjct: 125 LGIPGERLYVSYFGGDDKTGLDADEECRQIWLNI-GVPPSHILSFGMKDNFWEMGDVGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++       LP   ID G+G
Sbjct: 184 GPCSEIHYDRIGD-RDASHLVNADDPMVVEIWNLVFIQFNREEDGSLKQLPHKHIDCGLG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+  VLQ K +NYD D+F  L  A    T ++               + +RV+ DH+R
Sbjct: 243 FERLVAVLQNKLSNYDTDVFTPLFSAIHNGTKVRPYSGKVGADDVDGIDMAYRVVADHIR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           +    ++DG  P N GRGYVLRRI+RR + YA   L  T   +  L+P +   +G  +PE
Sbjct: 303 TLCIALSDGGRPDNTGRGYVLRRILRRGIRYANEKLSATPGFLSSLVPTVVNLLGKTFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +    + + +  E+++F KTL++G  L     + L +  IL G+VA++LYDT+G PLD
Sbjct: 363 LHKDPQTVMDIINDEEKQFLKTLNKGRTLFQKAATRLQERNILPGNVAWRLYDTYGFPLD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +   RGL  ID  +F       R +A   S    +   + I   +       +  G
Sbjct: 423 LTQLMAEERGL-LIDFEAFENC----RQQAAEISAARANKMRDAIDLDVS-AISELKNKG 476

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +   S   K        +  +        I+ A+ +    V+   S     ++ D+T 
Sbjct: 477 IPVTDDSPKYKYYPLPPENQQTMYNFEKCEGIILALRKDKIFVDTLNSEDFGAIILDRTN 536

Query: 520 FYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQL DTG    +  G    +++VQ +  G  V    VE G L     ++  ID 
Sbjct: 537 FYAEQGGQLFDTGVLREVDKGSEFIVSNVQIR-GGYVVLVGTVE-GELSVGDKVIQAIDE 594

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R  +  NH+ TH+L+ AL  ++G  V Q GS + PD LRFD+T  +P+T  ++K +E+
Sbjct: 595 ERRNLIMKNHTGTHVLNFALRKVVGE-VEQKGSLVAPDRLRFDLTSKQPLTYEQIKIVEE 653

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSS----- 691
               +I  N  V  +     +A   +G  A+    Y D VR+VSV      +        
Sbjct: 654 ESQMLIDTNATVFAKNAPLAEARQINGLRAVFEEAYPDPVRIVSVGVPIEELLKDKDGDL 713

Query: 692 ------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK-- 743
                   CGGTH+ + G I  L I  E +I  GIRRI A+TG  A   +   D   +  
Sbjct: 714 AVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRIEQRV 773

Query: 744 ----------SLASFLKVSQGNVVGRVEEIWEEY-----------------RKLQLIHAK 776
                      + +  K        R+ +++EE                  + LQ +   
Sbjct: 774 EEAHNEIATDRIVTLDKTQFKTASKRIHDLFEEINQSQLPYCRKESIRKKAKALQKLLDM 833

Query: 777 R----------KLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGII 825
           R          K+Q    +L      D  +  HI S   + K L   + +++K   S  +
Sbjct: 834 RDREAKAAVTDKVQQEARELDASLNGDTLYTVHIFSKGANGKVLDGALKSIKK---SHAV 890

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           M   I+ +  K  V+  V++D+ ++   A +      +VL  G GGG    AQ+ G N  
Sbjct: 891 MGFSINDDIGKVVVVARVSKDVANKGLQASEWISKVCRVL-DGRGGGTVIQAQATGNNTE 949

Query: 884 KADQAIAGVASFLK 897
             ++A      F +
Sbjct: 950 LVEEAAQIALKFAE 963


>gi|256272535|gb|EEU07514.1| Ala1p [Saccharomyces cerevisiae JAY291]
          Length = 958

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/978 (30%), Positives = 467/978 (47%), Gaps = 115/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 738 --------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +++  +  +  +I +  +      AK+
Sbjct: 768 ADLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI---QSGIIMLVGIS 831
           + +  ++++      + N    +  I    ++K +   ++ ++         I +L G  
Sbjct: 828 ENKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYIKSNDAVKDKSIYLLAGND 887

Query: 832 KEKKASVLIVVT-EDLLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGP 880
            E + +    ++   L    +   LA+  + +          +            Q  G 
Sbjct: 888 PEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVF-----------QGMGD 936

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  + S  K+
Sbjct: 937 KPAAIKDAVDDLESLFKE 954


>gi|315108664|gb|EFT80640.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
          Length = 892

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/926 (32%), Positives = 474/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDVVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ  G +    D A+  V + L
Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTKL 889


>gi|317482215|ref|ZP_07941237.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916353|gb|EFV37753.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 893

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/927 (34%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+    AV+G   VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAEVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   
Sbjct: 630 LRDNLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGGG G+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGGG-GK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|189218662|ref|YP_001939303.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|205830140|sp|B3E044|SYA_METI4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|189185520|gb|ACD82705.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 926

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/969 (33%), Positives = 468/969 (48%), Gaps = 128/969 (13%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
           M N + IR +FL+FF++ GH +LPS+SL+P   P L+FTN+GM PF   F G++K  Y  
Sbjct: 1   MMNSNEIRQSFLDFFKERGHTILPSASLVP-ESPNLLFTNAGMNPFVPFFLGKQKCPYVP 59

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   QKC+RAGGKHNDL+ VG    HHTFFEMLGN+SF  YFKE AI  AW+LLT+++
Sbjct: 60  PRIADSQKCLRAGGKHNDLEEVGYDTYHHTFFEMLGNWSFNDYFKEEAIHWAWELLTQKW 119

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISG----LSADKIIRITTNDNFWSMAET 166
              + R+Y TVY          DEEAF++W K+           I   T  DNFW M ET
Sbjct: 120 GFPKERIYATVYKPAPDEPGEFDEEAFRIWFKLFQKAKLNPLLHIHFGTKKDNFWMMGET 179

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI  D            ++     IEIWNLVF+Q          +LP   +DT
Sbjct: 180 GPCGPCSEIHIDLTPDGQSEGKLINKNSPLCIEIWNLVFIQLNANEDGSFSLLPSRHVDT 239

Query: 227 GMGLERMATVLQEKTNN---------YDIDLFKHLIQASEQVTGMKYEG----------- 266
           GMGLER+  ++Q  ++          YD DLF  LI+  + ++ + Y G           
Sbjct: 240 GMGLERVCAIIQGTSSFRQFNRTISDYDTDLFIPLIEKLQDISKVSYTGSIPPTPDFALD 299

Query: 267 ---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
                 +  RVIVDH+R+ +F IADGILP+N GRG+VLRR++RRA+ + ++LG   P + 
Sbjct: 300 PQLKKDIAFRVIVDHVRALAFAIADGILPSNLGRGHVLRRLLRRAIRFGQILGVNPPFLF 359

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEI 381
            ++  L   MGS YPELI  +  IEE + SE+E F +TL  GL L + +   +   K + 
Sbjct: 360 EMVDPLVKIMGSHYPELIDKQGHIEEVISSEEELFARTLSHGLALFEEIKQKMIAEKRKE 419

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G  AF LYDT+G PLD+ Q +   +G + +D   F + + EQR R+            
Sbjct: 420 ISGKEAFVLYDTYGFPLDLTQLLAKEQGFS-VDTQGFERLMAEQRRRSLLSHEE------ 472

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
                 +      +QF+GY+ L     +                                
Sbjct: 473 -----DIVSLTKTSQFVGYEELEAEAEVVVLLSAN------------------------- 502

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
                       +FD+TPFYAE GGQ+GD G  + D  ++++ D  K A G  VH     
Sbjct: 503 ----------RAIFDRTPFYAEMGGQVGDKGYVVFDQKKIEVLDTMKSASGAHVHRLAFT 552

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L+    + L +D + RR ++ +H+ATHLLH AL  +LG    Q GS + PD LRFD 
Sbjct: 553 DD-LKPGSRVYLQVDEKRRRCIAAHHTATHLLHWALRKVLGPETLQRGSYVGPDRLRFDF 611

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVS 680
           +H+ P+++ EL  IE  VN+ I  N PV     + E    +     L G KY  RVR+VS
Sbjct: 612 SHTGPLSAEELAEIERLVNEKIELNDPVTAEEESYEKVKNNPDILQLFGEKYGQRVRIVS 671

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V     G +S  LCGGTHV STGEI    I+ E  + AGIRRIEA  G+     L  Q  
Sbjct: 672 V-----GRYSKELCGGTHVRSTGEIGYFKILGEYGVSAGIRRIEAACGKALEQFLHAQAA 726

Query: 741 KLKSLASFLKVSQGNVV----------------------GRVEEIWEEYRKLQLIHAKRK 778
           +       L     ++                         +    +E ++ + + AK++
Sbjct: 727 EQDKKWQILHSKDPSLPRLSKWVDTLDLDSLIEIFQRRNEELSSFEKEIKEREKLRAKKQ 786

Query: 779 LQ------LNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVG 829
            +            +  ++  +  +  +  + D+K    L  + + + K+I S  + ++ 
Sbjct: 787 EENFRREASQQAMAAIAQVEKIGAIPVLFLDCDAKPQSYLPLLWNEISKRIDS--VAILA 844

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
              E K ++ I V   L  +  A +L          G GGG   +AQ G  +  +     
Sbjct: 845 SRSEGKINLFIGVGPSLTTKIEARNLLSQLVASFE-GKGGGSKTIAQGGLKDSIEISSLF 903

Query: 890 AGVASFLKK 898
                 L++
Sbjct: 904 EKGRGILEQ 912


>gi|151945412|gb|EDN63655.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 958

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/978 (30%), Positives = 467/978 (47%), Gaps = 115/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDENLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 738 --------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +++  +  +  +I +  +      AK+
Sbjct: 768 ADLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI---QSGIIMLVGIS 831
           + +  ++++      + N    +  I    ++K +   ++ ++         I +L G  
Sbjct: 828 ENKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGND 887

Query: 832 KEKKASVLIVVT-EDLLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGP 880
            E + +    ++   L    +   LA+  + +          +            Q  G 
Sbjct: 888 PEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVF-----------QGMGD 936

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  + S  K+
Sbjct: 937 KPAAIKDAVDDLESLFKE 954


>gi|6324911|ref|NP_014980.1| Ala1p [Saccharomyces cerevisiae S288c]
 gi|1163069|emb|CAA89980.1| ALA1 [Saccharomyces cerevisiae]
 gi|1420729|emb|CAA99658.1| ALA1 [Saccharomyces cerevisiae]
 gi|285815203|tpg|DAA11096.1| TPA: Ala1p [Saccharomyces cerevisiae S288c]
          Length = 958

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/978 (30%), Positives = 467/978 (47%), Gaps = 115/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 738 --------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +++  +  +  +I +  +      AK+
Sbjct: 768 ADLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI---QSGIIMLVGIS 831
           + +  ++++      + N    +  I    ++K +   ++ ++         I +L G  
Sbjct: 828 ENKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGND 887

Query: 832 KEKKASVLIVVT-EDLLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGP 880
            E + +    ++   L    +   LA+  + +          +            Q  G 
Sbjct: 888 PEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVF-----------QGMGD 936

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  + S  K+
Sbjct: 937 KPAAIKDAVDDLESLFKE 954


>gi|255948530|ref|XP_002565032.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592049|emb|CAP98312.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 958

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/970 (32%), Positives = 483/970 (49%), Gaps = 97/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R TFL++F++NGH  +PSS + P +DPTL+FTN+GM  FK+IF G          
Sbjct: 9   TAQRVRDTFLDYFKQNGHTFVPSSPVAPLSDPTLLFTNAGMNQFKSIFLGTVDASSDFGK 68

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +  T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 69  MKRATNSQKCLRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 128

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++ +E        EA +LWK + G+    I+     DNFW M + GPC
Sbjct: 129 YGLDPDRLYVTYFEGNEAGGLEPDLEAKELWKSV-GVPESHILPGDMKDNFWEMGDQGPC 187

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +E+    +EIWN VF+Q+ ++       LP   +DTGMG
Sbjct: 188 GPCSEVHYDRIGGRNAAH-LVNEDDPNVLEIWNNVFIQYNREPDSSLRSLPNKHVDTGMG 246

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  + QA +  TG +                 +RV+ DH+R
Sbjct: 247 FERLVSILQNKPSNYDTDVFTPIFQAIQNTTGAREYRGQFGADDADGIDTAYRVVADHVR 306

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           +  F I+DG++P NEGRGYV+RR++RR   YAR             L+P +  ++G  +P
Sbjct: 307 TLMFAISDGVIPNNEGRGYVIRRVLRRGARYARKYFQVDIGNFFAKLVPTVVDQLGEMFP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     + +   ++L+G   ++LYDT G 
Sbjct: 367 ELKRKQQDVVEILDEEELSFAKTLDRGERQFEQYAQQAKVKGTDMLHGADVWRLYDTFGF 426

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID + F +A    R +A+  S G        +   + +      
Sbjct: 427 PVDLTRIMAEERGLR-IDDVEFEEA----RLKAKEASKGQKKAAENTVKLDVHD------ 475

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG---EIVEEAVSGQKVEV 513
                     K  K +        P      +++ VKAI       +  ++   G ++ +
Sbjct: 476 --------LGKLEKMNDVQKTDDSPKFGRGNITAHVKAIYHGKTFHKSTDDVPEGAQLGI 527

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D T FYAE GGQ  DTG  I DG   L++ DVQ    G  +H   ++ G      S++
Sbjct: 528 ILDCTNFYAEQGGQENDTGKIIIDGQAELEVGDVQ-SYAGYVLHTGFMKYGSFTVGNSVI 586

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ AEL
Sbjct: 587 CEYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKTAISDAEL 646

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           ++IE    + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E       
Sbjct: 647 ENIEAKSTEYIRQNCAVYSQELPLATAQQISGVRAVFGETYPDPVRVVSVGVELEEILKN 706

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSH 734
                    S   CGGTHV  TG+I  L I+ ES I  G+RRI A+TG      QR    
Sbjct: 707 VKDPRWQEVSIEFCGGTHVQKTGDIKDLIILEESGIAKGVRRIIAVTGEDAHEVQRVAEE 766

Query: 735 LMGQDEKLKSL---------ASFLKVSQGNVV----------GRVEEIWEEYRKLQLIHA 775
              + ++L +L         A  ++V    +V           R  +I ++    Q    
Sbjct: 767 FGQRLDRLNALPLGSEKEQEAKQVQVDLNQLVISAVQKAKFRERFAKINKQVLDGQKAQQ 826

Query: 776 KRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVG 829
           K + +  VE ++ +     N      +  +    ++K +   ++ ++ K+Q   + +L  
Sbjct: 827 KLESKKAVEAITSYFETPENQDKSWLVVQLPISANAKAVSESLNHVKSKMQGKSVYLLAA 886

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            S++ + S    +++ L D   +A D A + +  +GG  GG  P      G N +K ++A
Sbjct: 887 DSEQGRVSHGCYISQGLSDQGASASDWAAVVSGAVGGKAGGKGPTS-IGNGTNTDKVEEA 945

Query: 889 IAGVASFLKK 898
           I+  A +L K
Sbjct: 946 ISLAADYLNK 955


>gi|313764300|gb|EFS35664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313816208|gb|EFS53922.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313827649|gb|EFS65363.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|314915290|gb|EFS79121.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918160|gb|EFS81991.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920236|gb|EFS84067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314931759|gb|EFS95590.1| alanyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955561|gb|EFS99962.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958056|gb|EFT02159.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314967492|gb|EFT11591.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
 gi|315098688|gb|EFT70664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
 gi|315101309|gb|EFT73285.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|327450628|gb|EGE97282.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327454034|gb|EGF00689.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753292|gb|EGF66908.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
 gi|328754046|gb|EGF67662.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
          Length = 892

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/926 (32%), Positives = 474/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LL      M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G P
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L     +                         I+  G  V  A  G  VE+V  +
Sbjct: 473 LGYTDLTVDTTV-----------------------TGIIANGTSVTAAEPGAVVEIVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 ATRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSV 812
            RV ++  + ++ +        R+L   V+D+          + ++  +  V   +L+++
Sbjct: 745 DRVSKLAADLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L ++    + GG GGG
Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +  +AQ  G +    D A+  V + L
Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTEL 889


>gi|190407630|gb|EDV10897.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|207340860|gb|EDZ69081.1| YOR335Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149812|emb|CAY86616.1| Ala1p [Saccharomyces cerevisiae EC1118]
 gi|323352223|gb|EGA84760.1| Ala1p [Saccharomyces cerevisiae VL3]
          Length = 958

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/978 (30%), Positives = 467/978 (47%), Gaps = 115/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 738 --------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +++  +  +  +I +  +      AK+
Sbjct: 768 ADLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI---QSGIIMLVGIS 831
           + +  ++++      + N    +  I    ++K +   ++ ++         I +L G  
Sbjct: 828 ENKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGND 887

Query: 832 KEKKASVLIVVT-EDLLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGP 880
            E + +    ++   L    +   LA+  + +          +            Q  G 
Sbjct: 888 PEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVF-----------QGMGD 936

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  + S  K+
Sbjct: 937 KPAAIKDAVDDLESLFKE 954


>gi|269977319|ref|ZP_06184292.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|269934622|gb|EEZ91183.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1]
          Length = 894

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/925 (34%), Positives = 489/925 (52%), Gaps = 62/925 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           ++ LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI 
Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKM----SIDTGMGL 230
           +D+G    P G P    +G+R++E+WNLVF +F + + K + + L       +IDTG+GL
Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI 
Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDG-VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  
Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
              +  +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY  
Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY-- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 473 ---------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+
Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V+   M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  
Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  L ++SE S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+ 
Sbjct: 688 TGAIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  +  +    K +L   + +L         I    F+   +S     +L+     L
Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQL 807

Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           +    K +S ++ L    KEK   V+            A  L +  A  + GGGG G+  
Sbjct: 808 RGRFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGALVKAGAAAMQGGGG-GKDD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           +AQ GG  G   +  +    + L++
Sbjct: 867 LAQGGGAPGGSLENGLKAATTELQQ 891


>gi|115490933|ref|XP_001210094.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624]
 gi|114196954|gb|EAU38654.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624]
          Length = 968

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/977 (31%), Positives = 477/977 (48%), Gaps = 104/977 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHEL------------LPSSSLIPCNDPTLMFTNSGMVPFKNIF 50
               +R TFL++F+KNGH                SS ++P  DPTL+FTN+GM  FK+IF
Sbjct: 12  TAKRVRDTFLDYFKKNGHTFGIATVARSILPSFASSPVVPLADPTLLFTNAGMNQFKSIF 71

Query: 51  TGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
            G   P     T    C+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ +
Sbjct: 72  LGTVDPNSDFATLKSACIRAGGKHNDLDDVGKDGYHHTFFEMLGNWSFGDYFKKEAIRYS 131

Query: 111 WDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWS 162
           W+LLT  + LD +RLY+T ++         D EA +LW K  G+  D I+     DNFW 
Sbjct: 132 WELLTTVYGLDPQRLYVTYFEGHKEGGLEPDLEAKELW-KAVGVPDDHILPGNMKDNFWE 190

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
           M + GPCGPCSE+ +D+           + +    +EIWN VF+Q+ ++  +    LP  
Sbjct: 191 MGDQGPCGPCSEVHYDRIGGRNAAH-LVNMDDPNVLEIWNNVFIQYNREADRSLRPLPNK 249

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN--------IVNHR 273
            IDTG+G ER+ ++LQ+K++NYD D+F  L  A   +TG + Y+G             +R
Sbjct: 250 HIDTGLGFERLVSILQDKSSNYDTDVFTPLFDAIRDITGAREYQGRFGADDVDGIDTAYR 309

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCT 331
           V+ DH+R+  F I+DG++P N+GRGYV+RR++RR   YAR     E       L+P +  
Sbjct: 310 VVADHIRTLMFAISDGVMPNNDGRGYVIRRVLRRGARYARKYFQVEIGSFFSKLVPTVVD 369

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFK 389
           ++G  +PEL + +  + E L  E+  F KTLDRG    +     S    D+ L+G   ++
Sbjct: 370 QLGDMFPELKKKQHDVMEILDEEEISFSKTLDRGERQFEQYAQKSKTKGDDKLHGADVWR 429

Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
           LYDT G P+D+ + +   RGL  ID + F +A    R RA+  S G      + +   + 
Sbjct: 430 LYDTFGFPVDLTRLMAEERGLR-IDDLEFEEA----RLRAKEASKGQKKAAADAVKLDVH 484

Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAV 506
           +                K  K +               +++ VKAI           E  
Sbjct: 485 D--------------LGKLEKMEDVHKTDDSAKFGRENITAQVKAIYHGKSFCTSTSEIT 530

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565
           +G+++ ++ D+T FYAE GGQ  DTG  + DG   L++ DVQ    G  +H   ++ G  
Sbjct: 531 AGEQLGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQ-LYGGYVLHTGFMKYGSF 589

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               S++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H  
Sbjct: 590 SVGDSVICEYDELRRWPIRNNHTGTHILNFALREVLGDGIEQKGSLVAAEKLRFDFSHKS 649

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684
           P+T AEL+ +ED   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E
Sbjct: 650 PLTDAELQKVEDISTEYIRQNCAVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVE 709

Query: 685 -----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
                           S   CGGTHV  TG+I  L ++ ES I  GIRRI A+TG+ A  
Sbjct: 710 LEEILKNVSDPRWEKVSIEFCGGTHVQKTGDIKDLVVLEESGIAKGIRRIIAVTGEEAHE 769

Query: 734 HLM-------------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYR 768
                                  ++++ K +   L       V +     R   I ++  
Sbjct: 770 VQRLAADFEKRLASLETMPLGSEKEQEAKQIQVELNSLIVSAVQKSKFRERFARINKQIV 829

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQS- 822
             Q    K + +  ++ ++ +     N      ++ +    +SK +   ++ ++ K+Q  
Sbjct: 830 DAQKAQQKLESKKALDTINSYFADASNEGKSWLVAKLPISANSKAISEAINHVKSKMQDK 889

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            + +L   +   + +    V++   +   +A + A + +  +GG  GG  P      G N
Sbjct: 890 SVYVLAADAAAGRVAHGCYVSKAATEQGASASEWATVVSGAIGGKAGGKGPTS-IGNGVN 948

Query: 882 GNKADQAIAGVASFLKK 898
            +K D+A+     +L K
Sbjct: 949 PDKVDEAVELATDYLSK 965


>gi|312132886|ref|YP_004000225.1| alas [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773857|gb|ADQ03345.1| AlaS [Bifidobacterium longum subsp. longum BBMN68]
          Length = 893

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/927 (34%), Positives = 497/927 (53%), Gaps = 65/927 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L++F K+ H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  AW+LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +D+EA  +W    G+  + I ++   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDDEARSMWINE-GVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+EQ++G+KY  N   +   RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P++  L P     M ++YPEL      + 
Sbjct: 294 GVRPSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDIL 405
           E+   E++ F +TL+ G  +LD  ++    D    ++ G+ AFKL+DT+G P+++  ++ 
Sbjct: 354 ESAYGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLR 464
             +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  + 
Sbjct: 414 AEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM- 471

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAE 523
                                    + V  I+Q+G+    AV+G   VEV+ D+TPFYAE
Sbjct: 472 ----------------------SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAE 509

Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  
Sbjct: 510 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGA 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   SK    + + ++E+ VND 
Sbjct: 570 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDK 629

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTHV   
Sbjct: 630 LRDNLAVATKEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHV 686

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G+I ++ I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  RV  
Sbjct: 687 GKIGMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNA 746

Query: 763 IWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDA 815
           +  + ++     A   + +L  +V  L          +   +  V        L+  +  
Sbjct: 747 LLAKLKESDRRLASMYESQLAASVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLD 806

Query: 816 LQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGR 871
           ++ ++      ++ L G++++ K  V +   E        A DL R +AKVLGGGGG G+
Sbjct: 807 VRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGGG-GK 865

Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898
           P  AQ GG + +K D+A+  +    +K
Sbjct: 866 PDFAQGGGVDASKIDEALEALKHEAQK 892


>gi|225351924|ref|ZP_03742947.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157171|gb|EEG70510.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 892

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/922 (34%), Positives = 490/922 (53%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F+K+GH ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T+P+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTDPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  ++   +   + ++G+ AFKL+DT+G P++I  ++  
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAVSGEDAFKLHDTYGFPIEITLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   +EV+ D+TPFYA+A
Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPATIEVILDRTPFYAQA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + S+E  VN+ +
Sbjct: 570 ARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGEDGW---SRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ G+ A      +   +  L+  +      +  RV  +
Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADRVNAL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
               ++     A   + +L  +V  L     A    V   +  +    S   L+  +  +
Sbjct: 747 LARLKESDRRLATMYESQLAASVPALVSETKASQAPVKVAAKNVEHFGSFDALRKTVLDV 806

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+++E K  V +   E        A DL R ++K+LGGGGG G+P
Sbjct: 807 RGQLGEEFPVVVALAGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKILGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG +  K ++A+  +A 
Sbjct: 866 DFAQGGGADATKINEALEALAD 887


>gi|289444091|ref|ZP_06433835.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium
           tuberculosis T46]
 gi|289417010|gb|EFD14250.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium
           tuberculosis T46]
          Length = 877

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/910 (33%), Positives = 465/910 (51%), Gaps = 78/910 (8%)

Query: 25  SSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTN 84
           SS+   C   T  +++S +  +      +  P Y   T++Q        +      G T 
Sbjct: 1   SSTTPTCCSSTPGWSSSCLSSWD-----KSTPPYPTATSIQPV----HPYPRYRRGGITT 51

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKL 139
           RH+TFF+M GNFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +L
Sbjct: 52  RHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRL 111

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-PGGLPGSSEEGERYI 198
           W++++GL A++I R    DN+WSM   GPCGP SEI++D+G    P G P  SE+  RY+
Sbjct: 112 WQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYL 169

Query: 199 EIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           E+WNLVFMQ E+     +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +
Sbjct: 170 EVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPV 229

Query: 253 IQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           I    +V    Y+     + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +
Sbjct: 230 IDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVI 289

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
             A+LLG    ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L 
Sbjct: 290 RSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLF 349

Query: 370 DGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           + V S   K    +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR 
Sbjct: 350 EEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRR 408

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           RA+A +        +   +      GAT+F G+D LR                       
Sbjct: 409 RAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS---------------------- 446

Query: 488 VSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538
             + +  I   G+ V          A  GQ+VE+V D+TP YAE+GGQ+ D G   G G 
Sbjct: 447 -QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGS 505

Query: 539 ---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
               R  +TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H 
Sbjct: 506 SEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHA 565

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T    
Sbjct: 566 ALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQ 625

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            + A A GA AL G  Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESS
Sbjct: 626 LDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESS 681

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I +G+RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +    
Sbjct: 682 IGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELE 741

Query: 776 KRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVG 829
           + ++               +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  
Sbjct: 742 RVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVAL 801

Query: 830 ISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           I++ +  +V   V  +         A DL +  A  +  G GGG+  +AQ  G N    D
Sbjct: 802 IAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGID 860

Query: 887 QAIAGVASFL 896
            A+  V S +
Sbjct: 861 AALDAVRSEI 870


>gi|208435135|ref|YP_002266801.1| alanyl-tRNA synthetase [Helicobacter pylori G27]
 gi|208433064|gb|ACI27935.1| alanyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 817

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/861 (35%), Positives = 467/861 (54%), Gaps = 54/861 (6%)

Query: 36  LMFTNSGMVPFKNIFTGQEKPVY-QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
           ++FTN+GMV FK+IFTG          T+ Q C+RAGGKHNDL+NVG T RHHT FEMLG
Sbjct: 1   MLFTNAGMVQFKDIFTGMVPRPSIPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLG 60

Query: 95  NFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154
           NFSFG YFKE  I  AW+ +TK      + LYI+V+++D+EA KLW+K   +  D+I ++
Sbjct: 61  NFSFGDYFKEETILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKF--VPVDRIKKM 118

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGE-CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
              DNFW M ++GPCGPCSEI+ DQGE    G       EG+R++EIWNLVFMQ+E+ N 
Sbjct: 119 GDKDNFWQMGDSGPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSND 178

Query: 214 QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR 273
                LPK SIDTGMGLER+  +L+ K NN+D  LF  L+    ++T + Y      + R
Sbjct: 179 GVLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMGEISELTSLDYASEFQPSFR 238

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           V+ DH R+ +FL+A G+    EGRGYVLRRI+RRA+ +  L+G  E  +  ++  +C + 
Sbjct: 239 VVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVCEQF 298

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
            + +  L ++K ++ +    E+ERF +TL+ G+ L +  L HL +++I +G +AFKLYDT
Sbjct: 299 SNTHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKLYDT 358

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G PLD+  D+L + G A +D+  F   ++EQ  R++A   G  +      + ++   Y 
Sbjct: 359 FGFPLDLTNDMLRSHG-ACVDMQGFELCMQEQVKRSKASWKGKQNNAD---FSAILNAYA 414

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
             +F+GY+                           + ++       + + +A   Q+V V
Sbjct: 415 PNEFVGYETTECP----------------------AKVLGFFDSDFKEITDANPNQEVWV 452

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + ++TPFYAE GG +GD G  + D     I    K   G+      +++  L+    ++ 
Sbjct: 453 LLEKTPFYAEGGGAIGDRGTLLKDNEEAAIVLDTKNFFGLNFSLLEIKK-ALKKGDQVIA 511

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +    R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+
Sbjct: 512 QV-SDERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELE 570

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +ED VN  I ++L      M    A   GA AL   KY + VRVVS +       S  L
Sbjct: 571 KVEDLVNAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFK-----EASIEL 625

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK + 
Sbjct: 626 CGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNN- 684

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +V+  + ++ E  +  Q             DL   KI  V+ +  ++ + D   +K ++
Sbjct: 685 -DVIAGINKLKESVKNSQKAPVSM-------DLPIEKIHGVDLVVGVVEQGD---IKEMI 733

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D L+ K +  + M+     E + ++   V         A   A   A++L GG GGGR  
Sbjct: 734 DRLKSKHERLLAMVFKKENE-RITLACGVKNAP---IKANAWANEVAQIL-GGKGGGRDD 788

Query: 874 MAQSGGPNGNKADQAIAGVAS 894
            A +GG +      A+    +
Sbjct: 789 FASAGGKDIENLQAALNLAKN 809


>gi|323335374|gb|EGA76661.1| Ala1p [Saccharomyces cerevisiae Vin13]
 gi|323346372|gb|EGA80661.1| Ala1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 958

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/978 (30%), Positives = 466/978 (47%), Gaps = 115/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+   ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKXYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 738 --------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +++  +  +  +I +  +      AK+
Sbjct: 768 ADLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI---QSGIIMLVGIS 831
           + +  ++++      + N    +  I    ++K +   ++ ++         I +L G  
Sbjct: 828 ENKQTLDEVKTFFETNENAPYLVKFIDISPNAKAITEAINYMKSNDAVKDKSIYLLAGND 887

Query: 832 KEKKASVLIVVT-EDLLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGP 880
            E + +    ++   L    +   LA+  + +          +            Q  G 
Sbjct: 888 PEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVF-----------QGMGD 936

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  + S  K+
Sbjct: 937 KPAAIKDAVDDLESLFKE 954


>gi|114663435|ref|XP_511075.2| PREDICTED: alanyl-tRNA synthetase isoform 3 [Pan troglodytes]
          Length = 894

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/847 (34%), Positives = 438/847 (51%), Gaps = 70/847 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++  +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRA 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +  +        +     + V A+ ++   VEE  +GQ+  VV D+T 
Sbjct: 476 RGLEVTDDSPKYNYHL--DSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGDLKVGDQVWL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I     V T+      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
               G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +  
Sbjct: 711 SGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESM 770

Query: 742 LKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLS 787
            K L+   + +K       +V   + ++ E        +++K +L    + L+  ++DL 
Sbjct: 771 KKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLD 830

Query: 788 CHKIADV 794
               ADV
Sbjct: 831 RASKADV 837


>gi|119025718|ref|YP_909563.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154487461|ref|ZP_02028868.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis
           L2-32]
 gi|205829991|sp|A1A198|SYA_BIFAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118765302|dbj|BAF39481.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154083979|gb|EDN83024.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis
           L2-32]
          Length = 892

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/921 (34%), Positives = 492/921 (53%), Gaps = 64/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   FL++F+++ H ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRFLDYFEQHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKHRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPKY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG TEP+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTEPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  ++   +   ++++G+ AFKL+DT+G P++I  ++  
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDMAVTKAKQGGSDLVSGEDAFKLHDTYGFPIEITLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLLQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   +EV+ D+TPFYA+A
Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAQA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID + R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLERRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VN+ +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNAVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  +      +  RV  +
Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDMVNARPDELAERVNML 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L     A    V      +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYESQLAASVPTLVAEAKASSAPVKVAKKNVGHFGSFDALRKTVLDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G++++ K  V +   E        A DL R ++KVLGGGGG G+P
Sbjct: 807 RGQLGEDAPVVVALAGMNEDGKPMVAVATNEAARKQGIKAGDLVRGASKVLGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVA 893
             AQ GG +  K D+A+  +A
Sbjct: 866 DFAQGGGADATKIDEALEALA 886


>gi|609338|gb|AAC49007.1| cytoplasmic alanyl-tRNA synthetase [Saccharomyces cerevisiae]
 gi|1097386|prf||2113423A Ala-tRNA synthetase
          Length = 958

 Score =  744 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/978 (30%), Positives = 466/978 (47%), Gaps = 115/978 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + +  LY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDSLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKRTKSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 738 --------------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +++  +  +  +I +  +      AK+
Sbjct: 768 ADLDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAVKDEVKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI---QSGIIMLVGIS 831
           + +  ++++      + N    +  I    ++K +   ++ ++         I +L G  
Sbjct: 828 ENKQTLDEVKTFLQTNENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKSIYLLAGND 887

Query: 832 KEKKASVLIVVT-EDLLDRFNAVDLARLSAKV----------LGGGGGGGRPHMAQSGGP 880
            E + +    ++   L    +   LA+  + +          +            Q  G 
Sbjct: 888 PEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVF-----------QGMGD 936

Query: 881 NGNKADQAIAGVASFLKK 898
                  A+  + S  K+
Sbjct: 937 KPAAIKDAVDDLESLFKE 954


>gi|306818740|ref|ZP_07452462.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307700826|ref|ZP_07637851.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|304648426|gb|EFM45729.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|307613821|gb|EFN93065.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 894

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/925 (34%), Positives = 488/925 (52%), Gaps = 62/925 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           ++ LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI 
Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKM----SIDTGMGL 230
           +D+G    P G P    +G+R++E+WNLVF +F + + K + + L       +IDTG+GL
Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI 
Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDG-VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  
Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
              +  +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY  
Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY-- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 473 ---------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+
Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V+   M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  
Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  L ++SE S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+ 
Sbjct: 688 TGAIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  +  +    K +L   + +L         I    F+   +S     +L+     L
Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQL 807

Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           +    K +S ++ L    KEK   V+            A  L +  A  + GGGG G+  
Sbjct: 808 RGRFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGALVKAGAAAMQGGGG-GKDD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           +AQ GG  G   +  +      L++
Sbjct: 867 LAQGGGAPGGSLENGLKAATIELQQ 891


>gi|291519140|emb|CBK74361.1| alanyl-tRNA synthetase [Butyrivibrio fibrisolvens 16/4]
          Length = 795

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/822 (36%), Positives = 437/822 (53%), Gaps = 48/822 (5%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFK  AI  +W+ LT+   LD  RLY ++Y EDEEAF++W K  G++ ++I
Sbjct: 1   MLGNFSFGDYFKHEAIAWSWEFLTEVLKLDPNRLYPSIYGEDEEAFEIWTKEVGVAPERI 60

Query: 152 IRI------TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS--EEGERYIEIWNL 203
            R          DNFW     GPCGPCSEI++D+GE    G P      + +R++E+WN 
Sbjct: 61  TRFYRDPETGECDNFWEHGA-GPCGPCSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNN 119

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           VF QF          L + +IDTGMGLER+A V+Q+  + +DID  K +     +++G K
Sbjct: 120 VFTQFNGDGHGGYEELAQKNIDTGMGLERLAVVMQDVDSVFDIDTMKAIRDKICEMSGKK 179

Query: 264 YEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           Y+ +  + V+ R+I DH+RSS+FL++DG+ P+NEGRGYVLRR++RRA  + R LG     
Sbjct: 180 YQVDALDDVSIRLITDHIRSSTFLVSDGVTPSNEGRGYVLRRLIRRAAKHGRALGIQGSF 239

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKD 379
           M  L   +  E    YPEL + +  I +TL +E+E+F KT+D+GL +L G+   L     
Sbjct: 240 MAKLSETVINECKDGYPELWEKREFIFKTLTAEEEQFNKTIDKGLEILAGMEEKLVAAGS 299

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
           + L+G+  FKLYDT+G P+D+  +IL  +G    D   F   +EEQR +ARA        
Sbjct: 300 KELSGEDTFKLYDTYGFPVDLTAEILEEKGFTY-DAAGFEACMEEQRQKARAARKETNYM 358

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             +   +   +    ++F+GYD                            S V  +  + 
Sbjct: 359 GADASVYDDIDLSVTSEFVGYD-----------------------NTTSESTVTVLTTET 395

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EIV+    G    ++  +TPFYA  GGQ+GDTG          + D  K   G   H   
Sbjct: 396 EIVDTLAEGMIGTIIVPETPFYATMGGQIGDTGVISTANGEFTVKDTIKLKGGKIGHVGE 455

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +  G+++    + LT+D + R ++  NHSATHL+  AL  +LG+HV Q GS    D  RF
Sbjct: 456 MTSGMIKVGEKVTLTVDAERRARICKNHSATHLMQKALREVLGTHVEQKGSYQDADRTRF 515

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +TS E+  +E  VND IA+ L V T IM+ ++A  SGA AL G KY + VRVV
Sbjct: 516 DFSHFSAMTSEEIAKVEKMVNDKIAEGLAVTTAIMSIDEAKKSGAMALFGEKYGETVRVV 575

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G  S  LCGGTHVS+T EI    I+SES + AG RRIEAITGQ    +    +
Sbjct: 576 KM-----GDFSVELCGGTHVSNTSEISAFKILSESGVAAGTRRIEAITGQAVFEYYADLE 630

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794
            KL + A+ LK     V  ++  + ++ ++        K +     +     S  ++  V
Sbjct: 631 AKLNAAAAALKCKPSEVEEKIAHLQKQLKETNSELESLKAKAAQAAVGDVMDSVVEVKGV 690

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++  ++ VD   L+ + D L+ K+  G+I+L      K   V++          +A +
Sbjct: 691 KLLATSVTGVDMNGLRDLGDDLKTKLGEGVIVLASDCDGKVNLVVMATDAAQAAGAHAGN 750

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           L +  A  +GGGGG GRP+MAQ+GG N      A+    S L
Sbjct: 751 LIKAIAPKVGGGGG-GRPNMAQAGGKNPAGIADALNEAKSVL 791


>gi|322694715|gb|EFY86537.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 952

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/962 (33%), Positives = 483/962 (50%), Gaps = 92/962 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R  F ++ ++ GH ++PS S++P +DPTL+FTN+GM  FK IF G           +  
Sbjct: 11  VREAFFDYMRQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD
Sbjct: 71  ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY T ++         D+EA +LW  I G+  D+I+     DNFW M + GPCGP S
Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLDI-GMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWNLVFMQF++Q       LP   IDTGMG ERM
Sbjct: 190 EIHYDKIGGRNAAH-IVNKDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGFERM 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            + LQE  +NY  D F  L +  E+VTG++   +             +RVI DH+R+ SF
Sbjct: 249 VSALQETDSNYATDCFTPLFKQIEEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRTLSF 308

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG +P ++GRGYV+RRI+RR + YAR     E       +LPAL + MG  +PEL++
Sbjct: 309 AITDGAVPNSDGRGYVIRRILRRGVRYARKYLKAEIGSFFSKILPALVSHMGDQFPELVK 368

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
            +L I+E L  E+E F +TLDRG    +   +   K+ +  L+GDV ++LYDT G P+D+
Sbjct: 369 KQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKNGVKKLDGDVVWRLYDTFGFPVDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID I  + A    R +AR  S  + +         + +     Q    
Sbjct: 429 TQIMAEERGLE-IDEIEVSVA----REKAREASKAVKASVDTFAKLDVHQIAQLDQQKVA 483

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                +KF+K D K   Q      +   S+             E      + ++ D+T F
Sbjct: 484 RTDDDAKFVKGDSKGKVQLIFDGKSFHNSTK------------ELPKNTAIGILLDKTNF 531

Query: 521 YAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE+GGQ+ DTG  + D  +  ++ DVQ    G  +H   +E G L +   ++   D   
Sbjct: 532 YAESGGQVADTGRIVIDDVVEFKVMDVQ-NYGGFILHSGYIEYGALSSGDEVICEYDELR 590

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +   EL+ IE   
Sbjct: 591 RSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELRKIETLS 650

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687
           N+ I +N  + ++ ++ + A    G  A+ G  Y + VRVVS+             ++  
Sbjct: 651 NEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDPKKQEWR 710

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---------- 737
            +S   CGGTHV  TG I  L +V ES I  GIRRI A TG  A                
Sbjct: 711 QYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGDAAHQVQREAAEFSKKLDV 770

Query: 738 ---------QDEKLKSLASFLK------VSQGNVVGRVEEI----WEEYRKLQLIHAKRK 778
                    +D + K ++  L       +++  +  R ++I      E +K Q   A   
Sbjct: 771 LEAMPFGPAKDAQTKVISQELSQLVISTLAKDELNTRFQKIATSVVAEQKKRQKAEAGAA 830

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +   V+     K AD  F+  +    ++K L  V    Q K ++  + + G S+E+ A V
Sbjct: 831 VGCVVKHFEEKKEADY-FVGRLPISANAKALTEVFKHFQAKDKTKSVYVFGGSQEEGAVV 889

Query: 839 --LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             + V +        A   A + + V+GG  GG  P   Q  G    K D A+     +L
Sbjct: 890 HGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEPTR-QGQGTKPEKIDDAVEAARKWL 948

Query: 897 KK 898
           ++
Sbjct: 949 EE 950


>gi|227875429|ref|ZP_03993570.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
 gi|227843983|gb|EEJ54151.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243]
          Length = 894

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/925 (34%), Positives = 487/925 (52%), Gaps = 62/925 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F  NGHE+ PS SLI   DP+++FT +GMVPF     G E   +   
Sbjct: 1   MRTAEIRQRWLDYFAANGHEVRPSVSLISP-DPSILFTIAGMVPFIPYIVGTETAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK----- 116
           T+VQKC+R     ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT      
Sbjct: 60  TSVQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           ++ LD  ++++T+++ED+EA+++W K  GL    I ++   + FW   + GP G C+EI 
Sbjct: 116 KYGLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKM----SIDTGMGL 230
           +D+G    P G P    +G+R++E+WNLVF +F + + K + + L       +IDTG+GL
Sbjct: 176 YDRGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIA 287
           ER+A +LQ+K N Y+ID    +IQ +++++G KY  +     V+ RV+ DH+RS+  LI 
Sbjct: 236 ERLAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIG 295

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR+MRRA+   RLLG  E +M  LLPA    M  +YPEL      I
Sbjct: 296 DGVRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTI 355

Query: 348 EETLRSEDERFGKTLDRGLVLLDG-VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            +   +E++ F +TLD G V+LD  V         L+G+ AF+L+DT+G PL +  +I  
Sbjct: 356 SDVAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEIAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDL 462
              +  +D   F + + EQ+ RARA ++   +G  +  ++  L EK G T   +F+GY  
Sbjct: 416 EAKVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY-- 472

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  I+Q G+ V  A +   +EV+ D+TPFYA
Sbjct: 473 ---------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYA 511

Query: 523 EAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           EAGGQL D G   +  G    + DVQ   +G+ +H   +  G +        TID + R 
Sbjct: 512 EAGGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRG 571

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            ++  H++TH++H  L   LG   +Q GS   P  +RFD  +SKP+++  L+ +E   N+
Sbjct: 572 AIARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANE 631

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +  NL V+   M  E+A  +GA A+ G KY   VR+V +    G   S   CGGTHV  
Sbjct: 632 RLRANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPL 687

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG I  L ++ E S+ +G+RRIEA+ G  A  +   +   +  +   +     ++V R+ 
Sbjct: 688 TGAIGSLMVLGEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERIT 747

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  +  +    K +L   + +L         I    F+   +S     +L+     L
Sbjct: 748 SMMERLKAAEKELEKTRLAALLSNLDNYVALAQNICGTKFICQSVSAGSVDDLRQAATQL 807

Query: 817 Q---KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           +    K +S ++ L    KEK   V+            A  L +  A  + GGGG G+  
Sbjct: 808 RGRFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGALVKAGAAAMQGGGG-GKDD 866

Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898
           +AQ GG  G   +  +      L++
Sbjct: 867 LAQGGGAPGGSLENGLKAATIELQQ 891


>gi|212716059|ref|ZP_03324187.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661426|gb|EEB22001.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM
           16992]
          Length = 892

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/921 (34%), Positives = 489/921 (53%), Gaps = 64/921 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F+K+GH ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  +WK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSMWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+++++G  Y  +    V  R++ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG T P+M  LLP     M  +YPEL      + 
Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTGPVMPTLLPTSKAAMEPSYPELNNTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  ++   +   + ++G+ AFKL+DT+G P++I  ++  
Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAVSGEDAFKLHDTYGFPIEITLEMAA 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY  +  
Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVQPIDFLGYTDM-- 470

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   +EV+ D+TPFYA+A
Sbjct: 471 ---------------------SARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAQA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + S+E  VN+ +
Sbjct: 570 ARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIGEDGW---SRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+SI +G+RR++A+ G+ A      +   +  L+  +      +  RV  +
Sbjct: 687 KIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADRVNAL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIAD---VNFMSHIISEVDS-KELKSVMDAL 816
             + ++     A   + +L  +V  L     A    V   +  +    S   L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYESQLSASVPVLVAETKASQAPVKVAAKNVEHFGSFDALRKTVLDV 806

Query: 817 QKKIQS---GIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+++E K  V +   E        A DL R ++K+LGGGGG G+P
Sbjct: 807 RGQLGEENPVVVALSGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKILGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVA 893
             AQ GG +  K D+A+  + 
Sbjct: 866 DFAQGGGVDATKIDEALEALV 886


>gi|313471806|sp|Q5AQL1|SYA_EMENI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|259486703|tpe|CBF84773.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_8G03880) [Aspergillus nidulans FGSC A4]
          Length = 961

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/966 (32%), Positives = 477/966 (49%), Gaps = 97/966 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++FQ  GH  + SS + P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 16  VRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSA 75

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLT+ + LD
Sbjct: 76  VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWELLTQVYGLD 135

Query: 122 QRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ ++E        A  LW K  G+  D I+     DNFW M + GPCGPCS
Sbjct: 136 PGRLYVTYFEGNKEGGLQPDLEAKALW-KAVGVPEDHILPGNMKDNFWEMGDQGPCGPCS 194

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++N      LP   +DTGMG ER+
Sbjct: 195 EIHYDRIGG-RNAASLVNQDDPNVLEIWNNVFIQYNRENDGSLRSLPNKHVDTGMGFERL 253

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN--------IVNHRVIVDHLRSSSF 284
            +VLQ+K++NYD D+F  + Q  + +TG + Y+G             +RV+ DH+R+  F
Sbjct: 254 VSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDDSDGIDTAYRVVADHVRTLMF 313

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG++P NEGRGYV+RR++RR   YAR     E       ++P +  ++G  +PEL Q
Sbjct: 314 AISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTVVEQLGDMFPELKQ 373

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +          D  L+G   ++LYDT G P+D+
Sbjct: 374 KQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTAGDHKLHGADVWRLYDTFGFPVDL 433

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL  ID   F +A    R +A+  S G    TT  +   + +          
Sbjct: 434 TRIMAEERGLE-IDDRQFEEA----RHKAKEASKGQKKTTTGSVKLDVHD---------- 478

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                 K  K +               V++ +KAI                +++ ++ D+
Sbjct: 479 ----LGKLEKMNGVPKTDDSAKFEIGNVTAQIKAIYHGKTFHSSTQNLDDSEQIGIILDR 534

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  + DG   L++ DVQ +  G  +H   ++ G  + + +++   D
Sbjct: 535 TNFYAEQGGQENDTGRIVIDGQAELEVVDVQ-QYAGYVLHTGYMKYGSFKVDDTVICEYD 593

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  + Q GS ++ + LRFD +H  P+T  EL  IE
Sbjct: 594 ELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVSAEKLRFDFSHKSPVTDVELVKIE 653

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEYE 684
           D     I +N  V ++ +    A   +G  A+ G  Y D VRVVS           VE  
Sbjct: 654 DLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETYPDPVRVVSVGAELDEILKNVEDP 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A       +E  K 
Sbjct: 714 RWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRLAEEFEKR 773

Query: 745 L----------ASFLKVSQGNVV---------------GRVEEIWEEYRKLQLIHAKRKL 779
           L          A      Q  V                 R  +I ++    Q    K + 
Sbjct: 774 LNHLEAMPSGSAKEQNAKQIQVELNQLSISAVQKSRFRERFTQINKKIIDEQKAQQKLES 833

Query: 780 QLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGII-MLVGISKE 833
           +  VE ++ +  A  N      ++ +    ++K +   +  ++ K+   ++ +L    ++
Sbjct: 834 KKAVESITSYFAAPENANKSWLIAKLPISANAKAVSECLTYVKTKLADKMVYVLASSLED 893

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            + +    V + + D   +A + +   ++ +GG  GG  P      G N  K D A+   
Sbjct: 894 GRVAHGCYVPKAISDQGASASEWSSAVSRAVGGKAGGKGPTS-IGNGINPEKVDDAVDLA 952

Query: 893 ASFLKK 898
           + +L K
Sbjct: 953 SEYLSK 958


>gi|21672664|ref|NP_660731.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009285|sp|Q8K9E7|SYA_BUCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|21623301|gb|AAM67942.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 883

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/921 (35%), Positives = 506/921 (54%), Gaps = 80/921 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +FL FF++  H ++PSSSLIP ND TL+FTN+GM  FK  F GQ+K  Y  V
Sbjct: 3   KTTNEIRQSFLNFFKEKEHVIVPSSSLIPENDSTLLFTNAGMNQFKEYFLGQKKKFYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TTVQ C+R GGKHNDL+NVG T RHHTFFEMLGNFSF  YFK+ AI  AW+LLT  K F+
Sbjct: 63  TTVQNCLRTGGKHNDLENVGYTKRHHTFFEMLGNFSFNDYFKKEAITYAWELLTSRKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           +D+ +L+I+VY++DEE +K+W+ I  +    I++I +        +NFW M ETGPCGPC
Sbjct: 123 IDKNKLWISVYEDDEETYKIWRDIIRIPCHHIVKIGSKNNSQYDSENFWQMGETGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF++  +          +  E +IEIWN+VF++F + +K +   L   SIDTGMGLER
Sbjct: 183 TEIFYNYDDSNKSNDFLKDK-NESFIEIWNIVFIEFNRISKTKIVPLINKSIDTGMGLER 241

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ VLQ   +NY ID+F+ LIQ     T +K   N  ++ ++I DH+RS +FLIA+ ILP
Sbjct: 242 ISAVLQNVHSNYKIDIFQKLIQKISNFTEIKDLNN--ISLKIIADHIRSCAFLIAENILP 299

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +   +G        L+P+L   MG +   L + + +IEETL+
Sbjct: 300 SNEHRGYVLRRIIRRALRHGHKIGIKNNFFYKLVPSLIEIMGDSAKILRKKEKIIEETLK 359

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+ +F +TLD+GL +L+  +     ++ ++G  AF LYDT G P+D+  DI   + +  
Sbjct: 360 IEEIQFSQTLDKGLKILNAEIKK-STNKTISGKTAFYLYDTFGFPIDLTSDICSEKNIK- 417

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           ID   FN A EEQ+ R+   +        + I            F GY            
Sbjct: 418 IDFKGFNIAKEEQKKRSSIKNKFYKDYNKDIIIND------TCIFEGYK----------- 460

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                        N   S+VK I  + E V     GQ   +  D+T FY E+GGQ+GD G
Sbjct: 461 ------------KNKTKSLVKYIFIKNESVFLIYKGQTATIFLDKTSFYPESGGQIGDIG 508

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  R  + + +K  +    H+  +  G +    S+   I++  R  + +NHSATHL
Sbjct: 509 ELYHKKSRFIVENTKKYGD-TIGHYGKLISGKIIVNDSIYSKINHVYRNAIQLNHSATHL 567

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  +LG +  Q GS ++   LRFD ++S  I  +++++IE+ +N  I  N  +  +
Sbjct: 568 LHAALQKVLGKNAIQKGSLVSNTHLRFDFSYSGNINLSQIQNIENIINKKIRSNDLIKIK 627

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            ++ E+A    A AL   KY   VRVV ++       S  LCGGTH   TG I L  I+ 
Sbjct: 628 NLSLEEAKKKKAIALFDYKYQSSVRVVFIK-----DFSIELCGGTHTKRTGNIGLFKIIE 682

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG----------NVVGRVEE 762
           +SS+ +GI+RIEA+TGQ+A  +L  +D  +++++  LK                V ++E+
Sbjct: 683 QSSVSSGIKRIEAVTGQQAIDYLHIKDNDMQNISFLLKCQNSKITEKIKKIIIQVEKLEK 742

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
             ++ +K + I+  +KL   + +     I  +N + +  +  D K +K ++D L+K+++ 
Sbjct: 743 KTDQLQKRENIYQIKKLSKKINN-----IKGINLLINTFTNYDQKSMKMIIDQLKKELKI 797

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-------KVLGGGGGGGRPHMA 875
            II+ +  +K    +V+I VT++L++   A+ +  +                      +A
Sbjct: 798 SIIIFINKNKND-FTVIIRVTKNLINYITALKIINIFIKKANGKGGGKK--------EIA 848

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           + GG N  K    +  + S++
Sbjct: 849 EGGGMNIKKLPMILNYIKSWI 869


>gi|303277145|ref|XP_003057866.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|313471752|sp|C1MR42|SYAP_MICPC RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic;
           AltName: Full=Alanine--tRNA ligase; Short=AlaRS
 gi|226460523|gb|EEH57817.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 899

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/925 (34%), Positives = 465/925 (50%), Gaps = 76/925 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  FLEF++   H  LPSSSL+P  DPT++ T +GM+ FK +F GQE+      T
Sbjct: 10  SGAGIRRRFLEFYEARDHARLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQEERKVPTAT 68

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ AI  AW++ TKE+ LD 
Sbjct: 69  TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIAWAWEISTKEYGLDA 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R++I+V+ ED+EA+ +W+   G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 125 SRIWISVFREDDEAYAIWRDEIGIPENRIKRMDEADNFWAAGPTGPCGPCSELYWDFHPE 184

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
                    ++  R+IE +NLVFM+  +        L + +IDTGMGLERMA +LQ K N
Sbjct: 185 RGVDGSEDLDDDSRFIEFYNLVFMESVRDTDGNMKPLKRKNIDTGMGLERMAQILQGKPN 244

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL + +I A+  + G+ Y+  +       +VI DH R+  +LI+DG+LP+N GRGY
Sbjct: 245 NYETDLIRPIIDAAASMAGISYDDADDATKLKLKVIGDHTRAVCYLISDGVLPSNVGRGY 304

Query: 300 VLRRIMRRAMCYARLLGYTEP-----LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           ++RR++RR +   RLLG   P         +         +    ++++   I + L  E
Sbjct: 305 IVRRLLRRVVRCGRLLGVKAPDGAGAFTPAIARVAIGLSEACDANVLKSSQKICDELERE 364

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + RF  TL RG  +L  +L+     +     L G+ AF LYDT+G PLDI  D+    G+
Sbjct: 365 ELRFATTLGRGEEILADMLAAAKTKDANAPKLTGEDAFTLYDTYGFPLDITTDVATEAGV 424

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +D+  F +A+   R  +R   + +     + +     E    T+F GY  +       
Sbjct: 425 -DVDVDGFEKAMAAARDLSRDARVAVDVTVGDLLGAIADELGEPTRFTGYGSV------- 476

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                V+A+++ GE V  A +G  VEVV D TPFYAE GGQ+GD
Sbjct: 477 ---------------TEEGVKVRALLKGGERVASAGAGDTVEVVLDATPFYAEGGGQVGD 521

Query: 531 TGCAI--GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            G  I   D  +L + D +K A G +FVH  +V  G++    ++  T+   +RR+   NH
Sbjct: 522 EGEIILSDDRGKLVVGDCRKAAGGRLFVHSCVVSEGVVGEGDAVTATVSAASRRRAKANH 581

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +ATHLL  AL   +G  VSQ GS +  + LRFD       T  EL  +E  VN  I   +
Sbjct: 582 TATHLLQSALKMTIGEDVSQAGSLVNFERLRFDFNAPSAPTPEELARVESLVNGWIGDAI 641

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            +    M    A   GA A+ G KY D VRVV          S  LCGGTHV +T EI  
Sbjct: 642 DLTAEEMAISRAKEKGATAMFGEKYGDVVRVVD-----VPGVSMELCGGTHVKNTAEIGG 696

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+SES I AG+RRIEA++G      L  +D  +K+LA  L+V    + GRV  + E+ 
Sbjct: 697 FKILSESGIAAGVRRIEAVSGPGVVDLLQERDGTVKALAGSLRVPPEEIAGRVSALMEDL 756

Query: 768 RKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +  Q      + +L V   +               +   +  VD   LK+  ++L   + 
Sbjct: 757 KTSQKEAEALRGELAVAKATALASQAIDAPGGAKVLVARMDGVDPAALKAAAESLVAALG 816

Query: 822 SGIIMLVGI-SKEKKASVLIVVTEDLLD--RFNAVDLA---------RLSAKVLGGGGGG 869
             + +++G    + K  ++   TE +       A  +              K        
Sbjct: 817 DDVAVVLGSGGDDGKVGLVASFTEGVQKAGGLKAGVVLGATAKACGGGGGGKPGFA---- 872

Query: 870 GRPHMAQSGGPNGNKADQAIAGVAS 894
                 Q+GG + +  D A+     
Sbjct: 873 ------QAGGRDASALDAALEDAKK 891


>gi|254796550|ref|YP_003081386.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589786|gb|ACT69148.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 848

 Score =  739 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/858 (40%), Positives = 506/858 (58%), Gaps = 62/858 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  F++FF KNGH  LPS+SL+P +DP+LMF N+GMVPFK  F   +K  + ++ T QK
Sbjct: 5   LRKKFIDFFVKNGHTHLPSASLVPKDDPSLMFVNAGMVPFKEYFADVKKAPFSSIVTAQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L + +LY
Sbjct: 65  CVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELKLSKEKLY 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY ED+EAF++W K++G    KI RI+T+DNFW M + GPCGPCSEIF+D GE + G 
Sbjct: 125 ITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHLSGD 184

Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           +P  +++ GER +EIWNLVFMQ+ ++   E   +    IDTGMGLER+A +L+   +NY 
Sbjct: 185 IPEDNKDPGERCVEIWNLVFMQYIRKQSGELARMECPCIDTGMGLERVAAILEGTDDNYK 244

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             LF+ +++ S++VTG K   +N   H+VI DHLRS+SFLIADG+LP N GR YVLRRI+
Sbjct: 245 TKLFEAIVKESQKVTGNK---DNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRII 301

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ Y+ +LG+   L+  L   L   MGS Y EL +AK LI +TL  E+E F  TL  G
Sbjct: 302 RRAVRYSHVLGFDTVLLPKLFWVLEECMGSYYQELTRAKNLILDTLTLEEESFRNTLKSG 361

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           + LL+ V S +   + L+GD+AF LYDTHG PLDI  D+L  + ++ +D   F + ++ Q
Sbjct: 362 MKLLEEVSSSMKGGDTLSGDIAFTLYDTHGFPLDITIDVLKEKKIS-VDEERFAERMKMQ 420

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R  A+A  +   + T+     ++  ++G T FIGY+   G                    
Sbjct: 421 RLLAQASRMNDTAQTSSYEVKAVFLEHGKTPFIGYENFTGL------------------- 461

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               +++ AI        E     ++ ++ DQT FY E+GGQ  D G   G+   L++  
Sbjct: 462 ----ALILAIT-------EKEGSNELTIILDQTIFYPESGGQESDQGIIEGENTTLKVEK 510

Query: 546 VQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           V K  EG+ +H   + +G  +     + L ID   R  L+ NHSATH+LHH L   LG+H
Sbjct: 511 VYKSTEGVILHECKIIKGQAISRGEKVNLKIDINRRNSLARNHSATHVLHHVLRKRLGTH 570

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           VSQ GS +TP+ LRFD +HS+PIT  EL  IED +N +I  + PV+T +   +DAI  GA
Sbjct: 571 VSQRGSLVTPNRLRFDFSHSQPITEEELSKIEDCINLMIWDDHPVITEVKKTDDAIRDGA 630

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             L G KY+D VRVVS+        +  LCGGTHV  +  I L+ I+S SS+  G+RRIE
Sbjct: 631 IGLFGEKYDDTVRVVSIG------EAVELCGGTHVKKSSSIGLVKILSASSVAHGVRRIE 684

Query: 725 AITGQRARSHLMGQDE----KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           A+T   A  ++  + +    +L    S LK  Q +    +  +++               
Sbjct: 685 AVTHLTALQYMREEIQAQLYQLNEHQSKLKTMQKSHQKEITSVYQSI------------- 731

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           +   +    +   V  ++  +  +  + L S+   ++ +     ++++     +   +LI
Sbjct: 732 VANAEAQTERYGSVEIVTKNVQGISREILLSLASGIRPRTG---VLIIHTELSEALYLLI 788

Query: 841 VVTEDLLDRFNAVDLARL 858
           ++ +++    + +D  + 
Sbjct: 789 ILDKEICKNISFIDSMKE 806


>gi|164427876|ref|XP_965697.2| alanyl-tRNA synthetase [Neurospora crassa OR74A]
 gi|38567140|emb|CAE76435.1| probable alanine--tRNA ligase, cytosolic [Neurospora crassa]
 gi|157071919|gb|EAA36461.2| alanyl-tRNA synthetase [Neurospora crassa OR74A]
          Length = 961

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/966 (33%), Positives = 481/966 (49%), Gaps = 95/966 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQA 60
            +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM  FK IF G      +    + 
Sbjct: 11  QVRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKR 70

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK + L
Sbjct: 71  AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGL 130

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D +RLY+T ++           EA  LW ++ G+  D II     DNFW M + GPCGPC
Sbjct: 131 DPQRLYVTYFEGSPDLGLEPDLEAKNLWLEV-GVPEDHIIPGNMKDNFWEMGDQGPCGPC 189

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +E+WN+VF+QF++Q  +    LP   IDTGMG ER
Sbjct: 190 SEIHYDKVGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGFER 249

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
           + + LQ+KT+NY  D+F  L    ++VTG +   +             +RVI DH+R  S
Sbjct: 250 LVSALQDKTSNYATDIFTPLFTKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRLLS 309

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
           F IADG  P N GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PEL+
Sbjct: 310 FAIADGAAPNNVGRGYVVRRVLRRGVRYARKYFNAEIGTFFSKILPALVEQMGEQFPELV 369

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLD 399
           + +  I+E L  E+  F  TLDRG    +   +   K  ++ L+G   ++LYDT G P D
Sbjct: 370 KKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGEKKLSGADVWRLYDTFGFPED 429

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   RGL  ID    N+A    R +AR  S  +                   +F  
Sbjct: 430 LTKLMAEERGLT-IDEAEVNEA----REKAREASKAVKEAVQ--------------EFAK 470

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFD 516
            ++ + ++                L       V+ I    E ++      +   + ++ D
Sbjct: 471 LNVHQIAELETALNIPRPNSDAKFLKGDTKGKVQLIFNGKEFLKSSKDLPAKTPLGLLLD 530

Query: 517 QTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            T FYAE+GGQ+ DTG  I DG+   ++ DVQ+   G  VH+  +E G L     +V   
Sbjct: 531 NTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEY-GGYIVHNGFLEYGELTEGDEVVCEY 589

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  D LRFD +H   I+  ++K I
Sbjct: 590 DELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDKLRFDFSHKAAISLEDIKKI 649

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE---------- 684
           ED  N  I QNL   ++ ++ + A    G  A+ G  Y + VRVVS+  E          
Sbjct: 650 EDLSNHYIRQNLKAYSKDVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNPKN 709

Query: 685 -DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------- 729
            +    S   CGGTHV +TG I  L IV ES I  GIRRI A TG+              
Sbjct: 710 PEWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQREAQVFNE 769

Query: 730 -----RARSHLMGQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                 A ++   +  ++K+ A  L       +++  +  R  +I +E    Q    K +
Sbjct: 770 KLNHINALAYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQKAE 829

Query: 779 LQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +  ++ ++ H   D N     F+ H+    ++K +  V+   + K +   + +   SK+
Sbjct: 830 SKTALDTVASHFQKDENKESKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGSKD 889

Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +    + V   L  +   A       + V+ GG  GG+    Q  G    K ++A+   
Sbjct: 890 DQVMHGVYVGTALSSKGVTAEQWTSAVSAVI-GGKTGGKEPSRQGAGAEPEKLEEAVKKA 948

Query: 893 ASFLKK 898
             +L +
Sbjct: 949 EEWLSE 954


>gi|156838512|ref|XP_001642960.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113543|gb|EDO15102.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 957

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/969 (31%), Positives = 472/969 (48%), Gaps = 95/969 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           + N + +R TF ++F+   H  + SS ++P +DPTL+F N+GM  FK+IF G   P  + 
Sbjct: 10  IWNANKVRDTFYDYFKSKNHTFISSSPVVPYDDPTLLFANAGMNQFKSIFLGTVDPTSKL 69

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDL++VG+ + HHT+FEMLGN+SFG YFK  AI  +WDLLT
Sbjct: 70  YDLKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTYFEMLGNWSFGDYFKNDAIVYSWDLLT 129

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             + + + RLY++ ++ DE        EA  +W+ + G+  D I+     DNFW M E G
Sbjct: 130 NVYKIPKDRLYVSYFEGDESQGLEPDFEARDIWRSV-GVPEDHIVPGNLKDNFWEMGEEG 188

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGP SEI +D+           +++    +EIWNLVF+Q+ + ++++   LP   +DTG
Sbjct: 189 PCGPSSEIHYDRIGGRNASQ-LVNKDDPNVLEIWNLVFIQYNRDSERKLKALPAKHVDTG 247

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +VLQ   +NYDIDLF  + +  + +T  +                 +RV+ DH
Sbjct: 248 MGFERLVSVLQNVNSNYDIDLFTKIFKRIQAITNAREYTGKFGKYDVDGVDTAYRVLADH 307

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSA 336
            R+ +F + DG +P NEGRGYV+RRI+RR   YAR             L+P +  E  S 
Sbjct: 308 ARTLTFALTDGCIPNNEGRGYVIRRILRRGARYARKYMNYSIGDFFSKLIPQVIEENKSI 367

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTH 394
           +PE+ +    I+E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+
Sbjct: 368 FPEVSKDFNYIKEILDEEEASFAKTLDRGEKLFEKYASDASKLDSKTLDGLQVWRLYDTY 427

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +    GL  ID+  F +A ++    ++  S        +     + +    
Sbjct: 428 GFPVDLTELMAQELGL-NIDVPGFERAKKDSYEASKRASKKYDIDLFKLDVHDISK---- 482

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEV 513
                   L      K + K   +         V + V  I    E ++ A    +K  V
Sbjct: 483 --------LNTDAVPKTNDKDKYET------TDVMATVLRIHDGSEFLDVAADKDKKYGV 528

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ+ D G  I DG     + +VQ+   G  +H   +  G L T   +V
Sbjct: 529 ILDKTCFYAEQGGQIYDNGKLIIDGKTEFNVENVQE-FNGYILHIGTLMDGKLSTNDKVV 587

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + D   R  +  NH+ TH+L+ AL  +LG  V Q GS +TP+  RFD +H KP+T  E+
Sbjct: 588 ASFDELRRFPIRNNHTGTHILNFALRDVLGKDVEQKGSLVTPEKFRFDFSHKKPLTLDEI 647

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           K IE   + +I    PV  + +   +A   S   A+ G  Y D VRVVS+          
Sbjct: 648 KEIEMICDTLIVSKKPVFYKNVQLNEAKRISSIRAVFGESYPDPVRVVSIGQPVEKILED 707

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736
               +    S   CGGTHV++T +I  L I+ E+ I  GIRRI A+TG  A +       
Sbjct: 708 PTETNSSEFSIEFCGGTHVANTEDIQKLAIIEETGIAKGIRRITAVTGPEAFNAQRIAEQ 767

Query: 737 ---------------GQDEKLKSLASFLKVSQGNVV---------GRVEEI-WEEYRKLQ 771
                           +D+K+K L   L  S  +V+          ++E+   EE RK  
Sbjct: 768 FNGELDDLNSLPFSDAKDKKIKELGFSLNQSTVSVLSKHLLREKFNKIEKKYKEELRKKN 827

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GI 830
            + AK  L    E  + +K +     +  I   +SK +   ++ ++       I L+ G 
Sbjct: 828 KLEAKVILDKVQEYFNTNKSSKFFVYAFDIP-ANSKAITDAINYIKNSNNDKSIYLLSGD 886

Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            K  K +    +++D + +  +  +L ++    L GG  GGR ++ Q      +  ++ I
Sbjct: 887 IKGNKLAHGCYLSDDAISKGIDGEELVKVV-TTLIGGKAGGRKNIFQGVSTYNDNINEVI 945

Query: 890 AGVASFLKK 898
             +     +
Sbjct: 946 DNITKIFSE 954


>gi|50286987|ref|XP_445923.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525229|emb|CAG58842.1| unnamed protein product [Candida glabrata]
          Length = 956

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/977 (29%), Positives = 464/977 (47%), Gaps = 115/977 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              ++R TF+++F++  H+ + SS ++P +DPTL+FTN+GM  +K IF G   P      
Sbjct: 10  TAHNVRKTFMDYFEEKNHKYVKSSPVVPFDDPTLLFTNAGMNQYKPIFLGTVDPSSDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  AW LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIDYAWKLLTEV 129

Query: 118 FDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T ++ D         EA  LWKK+ G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPADRLYVTYFEGDAKQGLEPDTEALDLWKKV-GVPEDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +E+WNLVFMQF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNQDDPDVLEVWNLVFMQFNREQDGSLKSLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L    +++TG +                 +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFMPLFARIQEITGARPYAGKFGDEDKDNIDTTYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           +  F +ADG +P NEGRGYVLRRI+RR   +AR             L P L  ++   +P
Sbjct: 308 TLVFALADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGNFFSSLAPTLIDQVKHIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGL 396
           E+ +    + E L  E+  F KTLDRG  + +   +     + + L+G   ++LYDT+G 
Sbjct: 368 EVAKDPSFLFEILDEEESSFSKTLDRGERIFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   + L  ID   F +A +E    ++      G    +    S+ E      
Sbjct: 428 PVDLTELMAEEQNLK-IDGPGFEKAKQESYEASKRGGQKGGDDLIKLNVHSIAE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L      K D               V   +  +    + V E    G+K  ++ 
Sbjct: 481 ------LNSENVPKTDDSFKY------GNENVEGKILKLHDGEKFVTEISEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG  + D      + +VQ    G   H   +  G L  +  ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDKAEFSVENVQ-LYNGFVFHTGTLSEGKLSVDDVIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L++AL   LG+ + Q GS + P+ LRFD +H K +T  E+  
Sbjct: 588 YDELRRFPIKNNHTGTHILNYALKETLGNDIDQKGSLVAPEKLRFDFSHKKALTIEEVTK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVE----------- 682
           +E+  N+ I  N  V  + +  + A +     A+ G  Y D VRVVSV            
Sbjct: 648 VENICNEQIKNNYNVYYKDVPLDLAKSIYSVRAVFGETYPDPVRVVSVGKPVDDLLANPS 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
            E+ G +S   CGGTHV +TG+I    I+ ES I  GIRRI A+TG  A           
Sbjct: 708 NEEWGKYSIEFCGGTHVKTTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRVADQFA 767

Query: 737 -------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                         +++KLK L   L       +S+ ++  +  +I +  +      AK+
Sbjct: 768 ADLEAADKLPFSPLKEKKLKELGVKLGQLSISVISKNDLKTKFTKIEKVVKDEVKSRAKK 827

Query: 778 KLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKE 833
           + +L ++++  H   +     F+  I    ++K +   ++ ++   +   + L+ G   E
Sbjct: 828 EAKLVLDEVKGHFTENPESQFFVKFIDVPANAKAITEAVNYMKTSAKDKSMYLITGNDPE 887

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR------------PHMAQSGGPN 881
            + +    +++  L++  A       A         G+             ++ Q  G  
Sbjct: 888 GRVAHGCFISDVALEKGIAGQ---ELA---------GKVSGIIGGKAGGKGNVFQGVGDK 935

Query: 882 GNKADQAIAGVASFLKK 898
               + AI  + +  K+
Sbjct: 936 PAAINDAINEITTAFKE 952


>gi|328858383|gb|EGG07496.1| hypothetical protein MELLADRAFT_48072 [Melampsora larici-populina
           98AG31]
          Length = 966

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/976 (32%), Positives = 482/976 (49%), Gaps = 112/976 (11%)

Query: 4   VSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
              +R TF+ +FQ+   H+ +PSSS+ P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 18  AKKVRKTFINYFQEKYQHQFVPSSSVCPLDDPTLLFTNAGMNQYKSIFLGTIDPSNPLSK 77

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE  +++AW+LLT+ 
Sbjct: 78  IKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEDGLKMAWELLTEL 137

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T ++ DE        E+ ++W ++ G+  D I+     DNFW M  TGPC
Sbjct: 138 YGLPKDRLYVTYFEGDEKQGLEPDLESKRIWLEL-GVQEDHILPGNAKDNFWEMGATGPC 196

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+      G    +++    IEIWN VF+++ +++      LP   +DTGMG
Sbjct: 197 GPCSEIHYDRVGGRNAGS-LVNQDDPLVIEIWNNVFIEYNRESDGSLKELPSKHVDTGMG 255

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ+K +NYD D+F+ + +  +Q+TG +                 +RV+ DH+R
Sbjct: 256 FERLVSILQDKKSNYDTDIFRPIFEKIQQLTGARPYEGKLGIEDQDGIDTAYRVVADHIR 315

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I+DG +P N GRGYVLRRI+RR   Y R             L+P L  +MG  +P
Sbjct: 316 TLTFAISDGGVPNNVGRGYVLRRILRRGARYIRKKFNVPIGTFFSKLMPTLIEQMGDEFP 375

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396
           E+ + +L + E L  E++ F  TLDRG  + +   + + K+  ++L+G   +KLYDT G 
Sbjct: 376 EIEKRRLEVIEILNEEEDSFSLTLDRGEKIFEKYCNRVKKNNGKVLDGKEVWKLYDTFGF 435

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+ GID   F  A  E +  ++     +     E    S+        
Sbjct: 436 PIDLTLLMAEEAGI-GIDQDGFEIAQSESKELSKGGKKKIVGAGVELDVHSIA------- 487

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                                          +++ VKAI Q GE     +E  SG+   V
Sbjct: 488 ----------VLESNSSVPKTDDSSKFSLTTINATVKAIFQAGEFYSSSKELKSGEPFGV 537

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  I +G     + DVQ    G  +H   +  G ++ E  + 
Sbjct: 538 ILDKTNFYAEQGGQENDTGTLIIEGEMIFDVEDVQ-VFNGYVLHIGNLSEGEIKKEDLVQ 596

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            + D   R+ +  NH+ TH+L++AL   LG H+ Q GS ++ +  RFD +H + + ++EL
Sbjct: 597 SSFDELRRKPIKNNHTGTHILNYALRETLGDHIDQKGSLVSSNKFRFDFSHKQQVKASEL 656

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGV--- 688
           + IE   ND I +N  V ++ M   +A    G  A+ G +Y D VRVV +  E   +   
Sbjct: 657 EQIEKICNDWILKNHSVYSKEMKLSEAEKIPGLRAVFGERYPDPVRVVVIGPEPIELDAD 716

Query: 689 ---------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH----- 734
                    +S   CGGTHV  T EI  L +V ES I  GIRRI A+TG+ A++      
Sbjct: 717 QLNESKWLNYSVEFCGGTHVKKTNEIKELILVEESGIAKGIRRIVAVTGEEAKTVIELAN 776

Query: 735 -------------LMGQDEKLK---------SLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
                        +  +++ LK          ++   K       G V+    E  KLQ 
Sbjct: 777 ELNLKLDKIIELPIKEREQGLKGFSVELAGIEISVIEKSKIKEKFGVVQRELIELGKLQT 836

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
              ++K    V+D       +   +  +    ++K L S    L+ + ++G   L  I+K
Sbjct: 837 KADEKKATQLVKDWIEVHPNERVMIDVLDVGSNTKCLMSACGILKNEGKAG--YLFSINK 894

Query: 833 -EKKASVLIVVTEDLL-DRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGN 883
            + K   +  +T++++ D +NA        KVL       G          AQ  G   N
Sbjct: 895 SDGKIVHVNSLTKEMVQDDWNAKIWMDEIIKVLGGKGGGKG--------DTAQGVGDQIN 946

Query: 884 KADQAIAGV-ASFLKK 898
           K ++AI     SFL K
Sbjct: 947 KVNEAIEIAKKSFLNK 962


>gi|183601533|ref|ZP_02962903.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190968|ref|YP_002968362.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196374|ref|YP_002969929.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183219139|gb|EDT89780.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249360|gb|ACS46300.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250928|gb|ACS47867.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289178710|gb|ADC85956.1| Alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793957|gb|ADG33492.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9]
          Length = 899

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/929 (34%), Positives = 484/929 (52%), Gaps = 71/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L +F+K  H ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTAEIAQRYLNYFKKQDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D++ VG+T RH TFF+MLGNFSFG YFKE AI  A+DLLT      
Sbjct: 60  ASNQKCVRT----LDIEEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTSPREDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F  D  +L++T Y +D+EA  +W+   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GFGFDPEKLWMTTYTDDDEARAMWRNE-GVDPEHIQILGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +   N + +  L         +IDTG GL
Sbjct: 175 VDRGPEY-GKEGGPIADESRYIEIWDLVFENYMVDNVKSKTDLHIAGELKHKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A+E++TG+KY  N    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLLQGKNNIYETDEVYPVIEAAEKITGIKYGENKEADVRMRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LG T+P+M  LLP     M   YPEL      + 
Sbjct: 294 GVRPSNAGRGYVLRRLIRRTIEAMRVLGVTDPVMPQLLPVSEQAMEPNYPELANTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---------EILNGDVAFKLYDTHGLPLD 399
           E    E++ F +TL  GL + D  ++               +++GD AF L+DT+G P++
Sbjct: 354 EAAYGEEDAFRRTLTNGLEIFDMAVAKAKSTAEEAKGETTPVVSGDAAFTLHDTYGFPIE 413

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFI 458
           +  ++   +G+  +D   F + + EQ+SRAR  +L          +   K K +   +F+
Sbjct: 414 LTLEMAQEQGVK-VDEAKFRELMNEQKSRARQDALKKRHNVDLSEYDDFKNKLHQPIEFL 472

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQ 517
           GY  +                          S V  I+ +G   V    +   VEV+ D+
Sbjct: 473 GYTEVSTR-----------------------SRVLGIMLEGVGSVPAVSAPATVEVILDR 509

Query: 518 TPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           TPFYAEAGGQL D G  I D G  L++ DVQK  + + V    +  G L        TID
Sbjct: 510 TPFYAEAGGQLADQGEIISDDGAVLEVDDVQKPIKDLIVQQCRLIEGTLVVGAEATATID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R  ++ +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   T   + ++E
Sbjct: 570 VERRGAIARSHTATHIVHKALREELGPQATQRGSEDAPNRLRFDFQWSTAPTKELMSAVE 629

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             VND +  NL V T  M  +DAIA GA  L G KY D VRVV++  +     S  LCGG
Sbjct: 630 ARVNDRLRDNLHVSTEEMKFDDAIALGAMHLFGEKYGDVVRVVTIGDDGW---SRELCGG 686

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           THV   G+I  + I+SE+S+ +G+RR++A+ GQ A      +   +  L+  L      +
Sbjct: 687 THVDFAGKIGQVNILSEASVGSGVRRVDALVGQSAYDFNAREHALVSQLSDTLNARPDEL 746

Query: 757 VGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLS---CHKIADVNFMSHIISEVDS-KEL 809
             R+  +  + +      A   + +L  +V +L     +  A V  +S  +    S   L
Sbjct: 747 ADRINTLLAKLKDSDRRLASMYEAQLASSVPELVEAAANSTAPVVVVSKNVGHFGSFDVL 806

Query: 810 KSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGG 865
           +  +  ++ ++      I+ L G++++ K  + +   E        A DL R ++K+LGG
Sbjct: 807 RKTVMDIRGRLGDDKPVIVALAGVNEDDKPVIAVATNEAARKAGVKAGDLVRGASKMLGG 866

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           GGG G+P  AQ GG + +K D A+  +  
Sbjct: 867 GGG-GKPDFAQGGGADASKIDAALEALTQ 894


>gi|110004987|emb|CAK99318.1| probable alanyl-trna synthetase protein [Spiroplasma citri]
          Length = 918

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/937 (30%), Positives = 484/937 (51%), Gaps = 96/937 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             ++IR  +L+FF+   H  LPS SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   TANAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+ L   K    
Sbjct: 65  NSQKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+T+Y +D+EA+++W+ + GLS ++II+   + NFW +   GPCGP +EIF+D+G
Sbjct: 121 DPAKLYVTIYKDDQEAYEIWRNVIGLSDERIIKGDKDTNFWEIGA-GPCGPNTEIFYDRG 179

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       G        E +RY+E+WN+VF Q+          LP+ +IDTG GLER+A+
Sbjct: 180 EKYDPEQIGLKLLQDDLENDRYLEVWNIVFSQYNNNGNGTYTDLPRKNIDTGAGLERIAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------VNHRVIVDHLRSS 282
           ++QE   N++ DLF  +I+A E++   KY  +                  +VI DH+R+ 
Sbjct: 240 IIQETPTNFETDLFMPIIKAVEKLVNGKYHYDETALFSNNSEQLKINTAFKVIADHIRAV 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +F I DG  P N+ RGYV+RR++RRA  Y + +  TEP +  L+  +   M   Y  L++
Sbjct: 300 TFAIVDGAFPGNKDRGYVIRRLIRRASLYGKKIDLTEPFLFKLVGTVVKIMQEYYSYLVE 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            + ++E+ +  E+++F KTL++G  L + V +  G    ++ + AF+L++++G P+++++
Sbjct: 360 KQPIVEQAVLDEEKKFLKTLEQGSKLFNEVKTKYG---TISKEHAFRLFESYGFPIELIE 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     G+  +D   F++ LE  ++ +R +   + +   +   F+  +   A+QF+GY+ 
Sbjct: 417 EEAHEVGI-NVDRAGFDELLENAKTISRTNRKDIKAIHLQSELFTKLDV--ASQFVGYEY 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
            + +                       + +  +    + V +  +     ++  +TPFYA
Sbjct: 474 EQVNN----------------------TEIVFMFADDKPVTKLTN-TTGYIILKETPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  + D     + DVQ+      +H   VE G L     +  +ID   R  
Sbjct: 511 EKGGQAADHGLILKDNTTAYVLDVQQGPNKQHLHFVKVE-GTLAIGDLVNASIDSDRRFY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS THL+H AL  +LG+HV Q GS    + LR D+TH++ IT AE+ ++E +V   
Sbjct: 570 TRKNHSGTHLIHAALREVLGNHVMQTGSYNDAERLRIDITHNQAITPAEITAVEGSVAKA 629

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +P      + + A+    A A    KY+  VR+V       G +S  LCGGTHV++
Sbjct: 630 IKTAIPCEIIYTDMQTALDVHHALAFFTEKYDAEVRIVKF-----GTYSCELCGGTHVAN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQ----------------RARSHL---------- 735
           + ++  L +    S  AG  RI AIT                   A ++           
Sbjct: 685 SQDVEDLLVTGLESKGAGTFRIHAITSNKTIASYLNEQFLKEKTEAINYFDKYNQGKAAL 744

Query: 736 --MGQDEKLKSLASFL--KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
                D+  + +++    K +   +   V +  E++++ Q  +    +Q  V+  +    
Sbjct: 745 LDQSLDQTWEQISNLTVSKPNWKQLKELVAQFKEDFKRWQKQYDNILIQQFVKQYNTFLP 804

Query: 789 HKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                +NF++H   ++VD   LK ++D  + + ++ +I LV +S E +A++++ V++DL 
Sbjct: 805 QDKNGINFLTHQFTTKVDINALKVLIDDYKARYRNLLIFLVDVSDETQATLIVGVSDDLH 864

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           DR+ A  + +    +L  G GGG   +AQSG  N +K
Sbjct: 865 DRYQAGKIIQQLNPLLN-GKGGGNNSVAQSGFNNKDK 900


>gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa]
 gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa]
          Length = 973

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/909 (32%), Positives = 431/909 (47%), Gaps = 94/909 (10%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
            + +R TF++FF++  H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 66  ANRVRDTFIKFFEEKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 125

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK +
Sbjct: 126 SRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVY 185

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        EA  +W +   L   +++     DNFW M +TGPCG
Sbjct: 186 KLPADRIYATYFGGDEKAGLAPDNEARDIWLQF--LPPGRVLPFGCKDNFWEMGDTGPCG 243

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWNLVF+QF +++      LP   +DTGMG 
Sbjct: 244 PCTEIHYDRV-GNRNAAMLVNNDDPTCLEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGF 302

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F  +  A +Q TG +               + +RV+ DH+R+
Sbjct: 303 ERLTSVLQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDVDGVDMAYRVVADHIRT 362

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            SF IADG  P NEGR YVLRRI+RRA+ Y   +L   E     L+  +   M   +PEL
Sbjct: 363 LSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNVVVKVMSDVFPEL 422

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            + +  I ET+ +E+  FGKTL +G+         +    +        L     LP+  
Sbjct: 423 KRNEEHIRETIAAEEASFGKTLLKGIEKFKKAAQEVEGKVLSGQARCVCLVGYIWLPIRF 482

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             +    RGL  +D+  FN A++E R R+R        G                     
Sbjct: 483 DSE---ERGLR-VDVEGFNNAMDEARERSRNAQNKQAGGAIV-----------------M 521

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           D    S   K+                  S++KAI    E +E A +  +V +V + T F
Sbjct: 522 DADATSALHKKGVSATDDSFKFICFEDHESVIKAIYNGSEFLESAAAANEVGIVLESTSF 581

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQ 578
           YAE GGQ+ DTG   G     Q+ +VQ    G  VH   +    G       +   +DY 
Sbjct: 582 YAEQGGQIFDTGVLEGPFGSFQVCNVQI-FGGFIVHIGSLTGVSGRFSVGEKVTCKVDYD 640

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R+ ++ NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+    L+ IE  
Sbjct: 641 RRKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPELLRKIESI 700

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V  +     +A   +G  A+ G  Y D VRVVS+           E E+ 
Sbjct: 701 VNGQIKDELGVFAKEATLAEAKQINGLRAVFGEVYPDPVRVVSIGRKVEDLLANPENEEW 760

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL- 745
              S+ LCGGTH+++T E     ++SE  I  GIRRI A+T   A   +       + + 
Sbjct: 761 LSISAELCGGTHITNTREAKAFALLSEEGIAKGIRRITAVTTDGAFKAMELAHSLEQEVD 820

Query: 746 -------------ASFLK----------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
                         + LK            + ++  ++  +  + RK Q   A+  +Q  
Sbjct: 821 EASKADGSLLEKKVASLKTRVDSALIPAAKKADIRAKISVLQNKVRKAQKKIAEENMQKA 880

Query: 783 VE-DLSCHKIADVNF----MSHIISEVDSKELKSVMDAL---QKKIQSGIIMLVGISKEK 834
           VE      ++A  +     +SH+   +D+  ++  +  +   + K   G+      + + 
Sbjct: 881 VEVAAEMAEVASSDGKAFCISHVDVGLDAAAVREAVLKVLERKHKQGCGVCWCAREAGQG 940

Query: 835 KASVLIVVT 843
           K    I V 
Sbjct: 941 KGVGSIRVA 949


>gi|329946643|ref|ZP_08294055.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526454|gb|EGF53467.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 903

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/936 (32%), Positives = 484/936 (51%), Gaps = 74/936 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANKHEIRPSVSLVSP-EPSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGVTTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T++++D+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEKDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIRAAEELSGKVYGRGSAGPEAGDAYHDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M ++YPE
Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKASYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDT 393
           L  +   I E    E++ F +TL  G  +LD  ++   KD       +++G  AF+L+DT
Sbjct: 356 LETSWSAISEIAFGEEDAFRRTLTAGTTILDTAVASAKKDAGRTGRPLMSGRSAFELHDT 415

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451
           +G P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  +   F   EK  
Sbjct: 416 YGFPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G + F+GY                         +   + V  ++  G       S  +V
Sbjct: 475 GGGSAFLGY-----------------------TESSAEASVAGVLVDGVPQSVVTSPAEV 511

Query: 512 EVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           EV+ D+TPFYAE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +     
Sbjct: 512 EVILDRTPFYAEMGGQLADQGTIRLADGGTVEVNDVQAPVKGLHVHRGTLTEGTIAVGEK 571

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   +   
Sbjct: 572 AFAQIDVARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALAGE 631

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++  IE+ VN  ++++L V   +M+ + A A+GA AL G KY   VRVVS+    GG  S
Sbjct: 632 QVAGIEERVNAKLSEDLTVTDEVMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWS 687

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV +TG I  + +V ESSI +G+RRI+A+ G  A  +   +   +  +++ + 
Sbjct: 688 KELCAGTHVPTTGHIGRIAVVGESSIGSGVRRIDALVGDGAYGYQAKEHALVSQISTMVG 747

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVD 805
                +  RVE +    +  +   A  +                 + +V   S  +  V 
Sbjct: 748 GRPEELPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVPVGEVRLASANLGSVG 807

Query: 806 -SKELKSVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            +  ++S+    + ++      ++ +  +   +   V+            A  L R +A+
Sbjct: 808 AADAVRSLTLDARSRLGDSEPAVVAVGAVLNSRPVIVVATNAGARDKGIRAGALVRTAAQ 867

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           VL GGGG G+  +AQ GG N +  D+A+  VA  ++
Sbjct: 868 VLDGGGG-GKDDLAQGGGQNPDALDEALRTVADQIR 902


>gi|221116701|ref|XP_002160302.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 998

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/973 (31%), Positives = 473/973 (48%), Gaps = 101/973 (10%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
                +R  F++FF K   H  +PSSS IP  DPTL+F N+GM  FK++F G   P    
Sbjct: 42  KTAKQVRQDFIDFFVKKYDHIFVPSSSTIPHEDPTLLFANAGMNQFKSLFLGTADPNSDF 101

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              + V   QKC+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG +FK+  I  +W+LLT
Sbjct: 102 AKLKRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDFFKKEIIAWSWELLT 161

Query: 116 KEFDLDQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             + L++ R Y+T +        DEEA + W ++ GL  + ++     +NFW M ETGPC
Sbjct: 162 DVWGLEKERFYVTYFGGADGVPADEEAKQFWLEL-GLPPNHVLPFGMKENFWEMGETGPC 220

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           + +    +E+WNLVF+QF ++   +   LP   +DTG+G
Sbjct: 221 GPCSELHYDRIGG-RDASNLVNMDVPDVLEVWNLVFIQFNREVDGQLVPLPNQHVDTGLG 279

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
           LER+ +VLQ K +NYD D+F     A  Q TG+K               + +RVI DH+R
Sbjct: 280 LERIISVLQNKMSNYDTDVFTPYFDAIHQATGIKPYLGLVGPDDKDGVDMAYRVIADHIR 339

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ +A   L     +   L+  +CT +GS YP 
Sbjct: 340 TLTVALSDGGRPDNVGRGYVLRRILRRAVRFATEKLNCKPGVFASLVDVVCTSLGSVYPN 399

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           +++    I++ +  E+ +F KTL RG  L +        D I+ GD+A++LYDT+G P D
Sbjct: 400 ILKDPQTIKDIINEEESQFLKTLARGRRLFNRTADKTT-DGIIAGDLAWRLYDTYGFPSD 458

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   +   R L  +D++ +     + +  ARA   G        +     ++     F+ 
Sbjct: 459 LTILMAEERNLK-VDMVGYEVLKAKAQEMARAR--GSEVEDIYSLDVHAIDELKTKGFVQ 515

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            D      + K+      +       +   +IV A+    + V+E  +G K  V+ D+T 
Sbjct: 516 TDESPKYNYEKD------EHGNYGNFSLCKTIVTALRVNKQFVDEVTNG-KCGVLLDRTS 568

Query: 520 FYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQL DTG   +G+ +   + DVQ    G +V H     G L+    +  +ID  
Sbjct: 569 FYAEQGGQLFDTGYINLGEEVEFAVNDVQ--IHGGYVLHVGNLVGTLKVGDKVTCSIDES 626

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            RR L  NH+ATHLL+ AL  +L     Q GS + PD LRFD T    ++S ++K  ED 
Sbjct: 627 RRRSLMNNHTATHLLNFALRKVLVDDADQRGSLVAPDKLRFDFTAKGALSSEQVKMTEDI 686

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH-------- 689
             +II Q+  V     +   A    G  A+    Y D VRV+S+ Y+   +         
Sbjct: 687 TREIIKQDQKVFASASSLAVAKNIQGLRAIFDEVYPDPVRVISIGYDLKDLINDPQAGYK 746

Query: 690 -SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK---LKSL 745
            S   CGGTH+ STG+++   IVSE +I  GIRRI ++TG  A       ++    L   
Sbjct: 747 TSVEFCGGTHLKSTGDVVEFAIVSEEAISKGIRRIVSLTGSDALKAHKRANQLASTLNEF 806

Query: 746 ASFLKVSQGN-------VVGRVEEIWEEYR-------------------KLQLIHAKRKL 779
           + +++V + N       +  ++ +I EE                     K  L   +R  
Sbjct: 807 SEYVEVQKNNNTLNMRQLSQQIAKITEEISESLIPAWCKHELREKLKSIKKHLDDTERME 866

Query: 780 QLNVEDLSCHKIADVN--------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           + + ++    K +++          +  +    ++K L + + +++    +   ML  + 
Sbjct: 867 KASRQNRVIEKASEIATLHLNEPFIVQRMEDGCNAKALDAALKSVKAVAPNLSAMLFSVD 926

Query: 832 KEKK-ASVLIVVTEDLLDR--FNAVDLARLSAKVL------GGGGGGGRPHMAQSGGPNG 882
            E      L  V ++++D     A +  +  + V+              P  AQ  G   
Sbjct: 927 TETNTVICLCQVPQNVVDNTSLKANEWVKEVSTVIGGKGGGK-------PISAQGSGDKM 979

Query: 883 NKADQAIAGVASF 895
            + D+A+    SF
Sbjct: 980 QEIDKAVEVAKSF 992


>gi|299751839|ref|XP_001830532.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130]
 gi|298409558|gb|EAU91282.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130]
          Length = 968

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/980 (31%), Positives = 470/980 (47%), Gaps = 109/980 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F E+F+   H  + SS  IP +DPTL+F N+GM  +K+IF G   P      
Sbjct: 12  TSRRVREEFFEYFRARDHTFVRSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSELSK 71

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLT+ 
Sbjct: 72  VKRAFNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIKYSWDLLTRV 131

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSM------ 163
           + L   RLY+T ++ D         EA + W +   L  D+++     DNFW        
Sbjct: 132 YGLSPDRLYVTYFEGDPANGLEPDLEAKECWLEY--LPEDRVLPGNAKDNFWGAWCHPPE 189

Query: 164 -------AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
                     G      EI +D+           +++    +EIWN VF+QF ++     
Sbjct: 190 LDLANRRGRDGRYRSLREIHYDRIGGRQAAH-LVNQDDPDVLEIWNNVFIQFNREPDGTL 248

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------- 268
             LP   +DTGMG ER+ +V+Q+K +NYD D+F  +    ++++G++             
Sbjct: 249 KPLPAKHVDTGMGFERLVSVIQDKRSNYDTDVFTPIFAKIQELSGVRPYEGRFGADDADG 308

Query: 269 -IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHL 325
               +RV+ DH+R+ +F ++DG +P N GRGYVLRR++RR   YAR  LG         L
Sbjct: 309 IDTAYRVVADHVRTLTFALSDGGVPNNVGRGYVLRRVLRRGSRYARKKLGVPIGSFFSSL 368

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILN 383
           +P +   MG  +PE+ +    I+E L  E+E F +TLDRG  L D   +    +  + L+
Sbjct: 369 MPVVVETMGDIFPEITKKVDDIKEILDEEEESFSRTLDRGEKLFDQYAAKAKAEGRKELS 428

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G   ++LYDT+G P+D+ + +    GL GI+   F +A    + +++  S G     T +
Sbjct: 429 GADVWRLYDTYGFPVDLTRLMAEELGL-GINDAEFEEA----QRKSKEASKGTAKKDTAE 483

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
           I             +  D+   +   K+D            T  +++ VKAIV   + + 
Sbjct: 484 I-------------VKLDVHELAILEKDDSVPKTDDSAKFGTGNITATVKAIVYDKKFLT 530

Query: 504 E---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAI 559
                       V+ D+T FYAE+GGQ  DTG  + DG    ++T+VQ    G  VH   
Sbjct: 531 STQDIPEDATFGVILDKTSFYAESGGQEYDTGNIVIDGAADFEVTNVQ-VYNGYVVHTGH 589

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           ++ G L     ++ + D   R  L  NH+ATH+L+ AL  +LG HV Q GS + P  LRF
Sbjct: 590 LKYGQLDVGSEVISSYDELRRWPLRNNHTATHILNFALREVLGDHVDQKGSLVAPTKLRF 649

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRV 678
           D +H   IT  EL  IE    D I +N+ V  + ++   A    G  A+ G  Y + VRV
Sbjct: 650 DFSHKAGITLPELTKIESMSIDWIKKNVKVYGKDLDLNLAQKIPGLRAVFGETYPNPVRV 709

Query: 679 VSVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++EY    +            S   CGGTHV+ TG+I    I  ES I  GIRRI A+T
Sbjct: 710 VTLEYSVDEIAADIENPKWRQTSIEFCGGTHVAKTGDIKGFVITEESGIAKGIRRIIAVT 769

Query: 728 GQRARS---HLMGQDEKLKSLASF--------LKV-------------SQGNVVGRVEEI 763
           G  A          +EKL    +         LK               +  +  ++  +
Sbjct: 770 GHEAAEVTRVAQALEEKLNQADALDGKAKDAALKALTVELGQADISVLKKAELKDKLNAM 829

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI 820
            + + K          +  +ED   H + + N   +++ + +  ++K L+S+  A + K 
Sbjct: 830 RKAFDKAVKEKEAAAGKKALEDFQKHFVENPNAQVYIALVEAGGNAKLLQSIATAAR-KA 888

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878
           +  I +    +++ K   +  V  +L  +   VD  + +AKV  L GG  GG+   AQ  
Sbjct: 889 EKSIYVFSHDAEQGKVPHVNYVAPNL--KAQGVDARQWAAKVTDLIGGKAGGKEESAQGV 946

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G   +K  +AIA     ++K
Sbjct: 947 GSEASKLQEAIAAARQHVEK 966


>gi|229817702|ref|ZP_04447984.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM
           20098]
 gi|229785491|gb|EEP21605.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM
           20098]
          Length = 892

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/922 (34%), Positives = 483/922 (52%), Gaps = 64/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   +L++F  + H ++PS+SLI  N PT +FT +GMVPF     G++   +  +
Sbjct: 1   MRTSEIAKRYLDYFAAHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTAPHPRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A++LLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  D  +L++T + +DEEA  LWK   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFDPEKLWMTTFTDDEEARSLWKNE-GVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  +E  N + +  L         +IDTG GL
Sbjct: 175 VDRGPEF-GVEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ER+A ++Q K N Y+ D    +I+A+E+++G KY  N    V  RV+ DH+RS+  +++D
Sbjct: 234 ERLAYLMQGKNNIYETDEVYPVIEAAERLSGHKYGENEAFDVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R LG  E +M  L P     M ++YPEL +    + 
Sbjct: 294 GVRPSNTGRGYVLRRLLRRTVKAMRALGVQEAVMPTLFPTSKAAMEASYPELNKTFHDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E    E++ F +TL+ G  + D  +S   +     ++G  AFKL+DT+G P+++  ++  
Sbjct: 354 EAAYGEEDAFLRTLEAGTEIFDMAVSKAKESGKGTVSGSDAFKLHDTYGFPIELTLEMAE 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465
            +G+  +D   F + + EQ+SRARA +L         ++   K+       F+GY     
Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGY----- 467

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEA 524
                                   + V  I+Q+G+    AV+G   +EV+ D+TPFYAEA
Sbjct: 468 ------------------TDFSARATVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAEA 509

Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  + D G  L++ DVQK  + + VH   +  G L     +   ID   R  +
Sbjct: 510 GGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTQVNANIDLNRRGAI 569

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + +H+ATH++H AL   LG   +Q GS   P+ LRFD   S   +   + ++E  VN+ +
Sbjct: 570 ARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNEKL 629

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NL V T+ M  +DAIA GA  L G KY D VRVVS+  +     S  LCGGTH+   G
Sbjct: 630 RENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHIDHVG 686

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I  + I+SE+S+ +G+RR++A+ G  A  +   +   +  L+  L      +  RV  +
Sbjct: 687 KIGAINIMSEASVGSGVRRVDAVVGAGAYEYNAREHALVSQLSDKLNARPDELAERVNAL 746

Query: 764 WEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDAL 816
             + ++     A   + +L   V  L     A    +      V        L+  +  +
Sbjct: 747 LAKLKESDRRLAAMYEGQLAATVPQLVQDANASAASVKVAAKNVGHFGSFDALRKTVMDV 806

Query: 817 QKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
           + ++      ++ L G+S E K  V +       D    A DL R ++K+LGGGGG G+P
Sbjct: 807 RARLGEDAPVVVALAGVSAEDKPMVAVATNAAARDLGIKAGDLVRGASKMLGGGGG-GKP 865

Query: 873 HMAQSGGPNGNKADQAIAGVAS 894
             AQ GG + +K D+A+  + +
Sbjct: 866 DFAQGGGADASKIDEALEALKA 887


>gi|301102849|ref|XP_002900511.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262101774|gb|EEY59826.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 980

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/973 (30%), Positives = 468/973 (48%), Gaps = 99/973 (10%)

Query: 4   VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
            + IR TF E+FQ      H    S  ++P +DPTL+F N+GM  +K IF GQ  P +  
Sbjct: 28  AARIRKTFFEYFQNQKELPHTFYKSCPVVPLDDPTLLFINAGMNQYKPIFLGQVDPSHPM 87

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                    QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ A+ L++ LLT
Sbjct: 88  AKLVRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGNYFKKEAVHLSFTLLT 147

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + F +D+ RLY T +          DEE  ++W     L  ++++     DNFW M + G
Sbjct: 148 EVFGIDKDRLYATYFGGDEKQGLPSDEETREIWLNY--LPTERVLPFGCKDNFWEMGDVG 205

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPC+EI +D+           + +    IEIWN VF+QF ++   +   LP   +DTG
Sbjct: 206 PCGPCTEIHYDRI-GNRDASELVNADRPDVIEIWNNVFIQFNREQDGKLVPLPHKHVDTG 264

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDH 278
           MG ER+A++LQ K +NYD D+F  L  A ++ T         G +      + +RV+ DH
Sbjct: 265 MGFERLASILQGKDSNYDTDVFTPLFAAIQKSTKAAPYTGKLGEEDPDKKDMAYRVVADH 324

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
           +R+ +F I DG +P+N+GRGYVLRRI+RRA+ Y +  L      +  L+P +   +G A+
Sbjct: 325 VRTLTFAITDGAVPSNDGRGYVLRRILRRAVRYGQQFLNAPSGFLTELVPVVVNMLGEAF 384

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL--NGDVAFKLYDTHG 395
           PEL+Q +  +EE +  E++ FG+TL++G+     +   + +   L   G+ AF LYD+ G
Sbjct: 385 PELVQKQKEVEEIILDEEKSFGRTLNKGIERFKKIAQGIREANKLVVPGEDAFFLYDSMG 444

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    G+  +DI  + + +  Q  R++      GS     +    +E     
Sbjct: 445 FPIDLTEIMAEEEGMT-VDIKGYEECMRLQSERSKMDRKKGGSNGARPLVLEARE----- 498

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVEEAVSG--Q 509
                     S    +           +     S+ V AI    E     V+E  +G  +
Sbjct: 499 ---------TSTLAGKHISATDDMAKYEWNVKTSAKVVAIFTTTESSSDFVDEVKAGDFE 549

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +V V+ D+T FY++AGGQ+ DTG      ++L +  V +   G  +H   +  G ++   
Sbjct: 550 RVGVILDKTSFYSQAGGQIYDTGVLTASNLKLDVDSV-ESYAGYVMHMGSIATGSIKVGD 608

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+   +DY  R +++ NH+ TH L+ AL  +LG+ V Q GS +    LRFD T++K +  
Sbjct: 609 SVACEVDYARRAKIAPNHTMTHALNFALRKVLGTVVDQRGSLVDESRLRFDFTNNKALKP 668

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681
           A+L  +E   +D+I Q L V T+   + +A    G  A+ G  Y D VRVVS+       
Sbjct: 669 AQLAEVEAICDDLIKQQLEVYTQNSAQAEAKRIQGLRAVFGETYPDFVRVVSIGQPIAPM 728

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
               E       S   CGGTH+ +T E     +  E +I  GIRR+ A T   A      
Sbjct: 729 LEDPEKSKWSNFSVEFCGGTHLKNTKEAKRFVLYEEGAIAKGIRRVSAYTCDLAVEAEER 788

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKLQLNVEDL---------- 786
             +    L +  K+     V  V        + L  +  K KL+  V+ L          
Sbjct: 789 GAKLQVELDAIDKLDGNEFVESVSAFKPVLDQALISLPLKDKLRKQVDSLVNRVKKIKKE 848

Query: 787 ------------------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                                +      +  +    DSK  + +++A+   I +G  M+ 
Sbjct: 849 AAAARAANGVRDATAEATKAKEAGQEIVVVKLDVGTDSKLGREMLEAMSTIIPTGSFMIF 908

Query: 829 GISKE-KKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM-AQSGGPNGNK 884
               +  K +    V++  +D  + +A       A V+  G GGG+  + A     + +K
Sbjct: 909 STDSDANKTAAFTQVSQHHIDSKQLDARKWVNH-AMVVMKGKGGGKDALNATGQAKSVDK 967

Query: 885 ADQAIAGVASFLK 897
            D+A+A   SF++
Sbjct: 968 VDEAVALAKSFVQ 980


>gi|212541448|ref|XP_002150879.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210068178|gb|EEA22270.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 1000

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/970 (31%), Positives = 475/970 (48%), Gaps = 97/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F+++F++ GH  +PSSS++P +DPTL+F N+GM  +K+IF G   P      
Sbjct: 51  TAERVRNEFIDYFKERGHTFVPSSSVVPVSDPTLLFANAGMNQYKSIFLGTVDPQSDFAH 110

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK  AI  +W+LLTK 
Sbjct: 111 LKRAVNSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKNEAITYSWELLTKV 170

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F LD  RLY+T ++ D         EA  +W+K+ G+  D I+     DNFW M + GPC
Sbjct: 171 FGLDPSRLYVTYFEGDAQGGLEPDLEAKDIWRKV-GVPEDHILPGNMKDNFWEMGDQGPC 229

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 230 GPCSEVHYDRIGG-RNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 288

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
            ER+ +VLQ+K++NYD D+F  L +  +++TG +                 +RV+ DH+R
Sbjct: 289 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAREYQGRFGAEDADGVDTAYRVVADHVR 348

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
           + +F I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +P
Sbjct: 349 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVNQMGGMFP 408

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396
           E+ + +  + E L  E+  F KTLDRG    +          +  L+G   ++LYDT G 
Sbjct: 409 EIKEKQDEVMEALNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 468

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   RGL+ ID   F +A    R +A+  S G      E +   + +      
Sbjct: 469 PVDLTQIMAEERGLS-IDEAEFEEA----RLKAKEASKGQKKAAAETVKLDVHDLG---- 519

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
                L    +  K D       P I       S+VKAI      ++   +   G+++ V
Sbjct: 520 ----KLDNMHEVPKTDDSSKFDSPKI------ESVVKAIYYSKSFIQTTADVPEGEQIGV 569

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG    +G   L++ DVQ    G  +H   ++ G L    S+ 
Sbjct: 570 ILDRTNFYAEQGGQENDTGAIYINGKAELEVGDVQ-SYGGYVLHTGFIKYGSLAVGDSVT 628

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D + R+ +  NH+ TH+L+ AL  +LG  ++Q GS +  + LRFD +H   ++  EL
Sbjct: 629 CEFDDRRRQPIRNNHTGTHILNFALREVLGDGINQKGSLVAAEKLRFDFSHKAGVSDKEL 688

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR-----------VRVVS 680
             IE    + I QN  V ++ +    A   SG  A+ G  Y D              +  
Sbjct: 689 DQIERKSTEYIRQNCGVYSKEVPLATAREISGVRAVFGETYPDPVRVVSVGVEVEEILKD 748

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR-------- 732
           V+       S   CGGTHVS +GEI  L I+ ES I  GIRRI A+TG  A         
Sbjct: 749 VKDPRWNDISIEFCGGTHVSKSGEIRELVILEESGIAKGIRRIIAVTGDEALQAQLTAVE 808

Query: 733 -----------SHLMGQDEKLKS---------LASFLKVSQGNVVGRV-EEIWEEYRKLQ 771
                       H   ++ ++K          +++  K    ++  R+ +++ ++ +  Q
Sbjct: 809 FEKRLEKLRTMEHGAAKETEMKQVQLELNQLSISAVQKAKFRDLFARINKQVLDDQKAQQ 868

Query: 772 LIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
            +  K+   L        +      F++ + +  +SK +   ++ ++ K+    +     
Sbjct: 869 KVELKKAQDLIKAYFDAEENKGRSTFVAKLPATSNSKVVSESINFIKSKMADKTVYFFAP 928

Query: 831 SKEK-KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                K +    V++   D   +    A + +  +GG  GG  P  A   G N +K D+ 
Sbjct: 929 DPSGNKVAHGCHVSKAASDLGLSPSGWANVVSGAVGGKAGGKAPT-AIGNGTNPDKVDEG 987

Query: 889 IAGVASFLKK 898
           +A    +L+K
Sbjct: 988 VALATEYLEK 997


>gi|325179830|emb|CCA14233.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 1022

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/986 (29%), Positives = 476/986 (48%), Gaps = 116/986 (11%)

Query: 4    VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
             + IR TF+ +F+K+    H   PS  +IP +DPTL+F N+GM  FK IF GQ  P +  
Sbjct: 61   ATRIRETFINYFRKHSFHPHTFYPSCPVIPLDDPTLLFINAGMNQFKPIFLGQVDPNHPM 120

Query: 60   ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+  I+++++LLT
Sbjct: 121  SKLQRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKQETIEMSFNLLT 180

Query: 116  KEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            K + +D  RLY T +  D        EE   +W K   L + +++     DNFW M + G
Sbjct: 181  KVYQIDAERLYATYFGGDPKQQLLPDEETRAIWLKY--LPSSRVLPFGCKDNFWEMGDIG 238

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPC+EI +D+           + +    IEIWN VF+QF ++N  +   LP   +DTG
Sbjct: 239  PCGPCTEIHYDRL-GNRDAAALVNADVPDVIEIWNNVFIQFNRENSGKLVPLPNKHVDTG 297

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDH 278
            MG ER+A++LQ KT+NYD D+F  L    + +T         G +   N  + +RV+ DH
Sbjct: 298  MGFERLASILQGKTSNYDTDVFTPLFHTIQSITKAEPYEGKLGAEDANNKDMAYRVVADH 357

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337
            +R+ +F IADG++P+N+GRGYVLRRI+RRA+ Y +  L   +  +  L+  +   M + +
Sbjct: 358  IRTLTFAIADGVMPSNDGRGYVLRRILRRAVRYGQQFLNAPKGFLNQLVRVVVDMMHNTF 417

Query: 338  PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--------HLGKDEILNGDVAFK 389
            PEL   +  +E+ +  E+E FG+TL++G+     ++            +   ++G  AF 
Sbjct: 418  PELKVKQNEVEQAILEEEESFGRTLNKGIEKFRKIVESVQGARDGEKQQAPAISGKDAFF 477

Query: 390  LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449
            LYD+ G PLD+ Q +    G+  +D+  + + ++ Q  R++             +    +
Sbjct: 478  LYDSMGFPLDLTQVMAEEEGMT-VDVEGYGEQMKLQSERSKQDRKKGSGDNARPLVLEAQ 536

Query: 450  EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ----GEIVEEA 505
            E               +  ++            +    + + V AI        E V   
Sbjct: 537  E--------------TNALLELGIPTTNDDAKYEWNKALQAKVVAIFTTTDSSCEFVSAV 582

Query: 506  VS--GQKVEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIV 560
             +    ++ +V D+T FYA+AGGQ+ DTG    D   G R  I D  +   G  +H   +
Sbjct: 583  TAQKHDRIGIVLDRTSFYAQAGGQVYDTGSLEKDQPAGTRFNI-DAVESYAGYVLHAGTL 641

Query: 561  ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
            E G L+    +   +DY  R +++ NH+ TH+L+ AL  +L  +V Q GS +    +RFD
Sbjct: 642  ESGSLQVGDDISCQVDYDRRSKIAPNHTMTHVLNFALRKVLVKNVDQRGSLVDDVRMRFD 701

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
             T +KP++ ++L+++E+   + I Q L V T+  ++ DA    G  A+ G  Y D VRVV
Sbjct: 702  FTTNKPLSPSQLQAVENMCENSIKQELQVFTKNTSQTDARRIQGLRAVFGETYPDTVRVV 761

Query: 680  SV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            S+           E       S   CGGTH+ +T +     +  E +I  GIRRI A TG
Sbjct: 762  SIGQMIDPMLKDPENSTWSNFSVEFCGGTHLENTKQARKFVLYEEGAIARGIRRISAYTG 821

Query: 729  QRARSHLMGQDEKLKSL-----------------------ASFLKVSQGNVVGR-VEEIW 764
            Q A +      E  K L                       AS + +   + + + +E + 
Sbjct: 822  QEALNAEKRGQELQKQLDCIKAMQDSDFIANVTAFRPILDASLISLPLKDHLRKELEVLV 881

Query: 765  EEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---------FMSHIISEVDSKELKSVMDA 815
            +  + L+    K++  L   D     I  V           ++ + +  D K  + ++ A
Sbjct: 882  DRVKTLK----KKEAALRAADAITQAIKQVKEAQEKSTKFVVARMQAGTDVKLGREILAA 937

Query: 816  LQKKIQSGIIMLVGISKE-KKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRP 872
            +   +  G  M+     + KK +    V++      + +A      + K +  G GGG+ 
Sbjct: 938  MSNALPEGSFMVFSTDDDAKKTAAFCQVSQHHADTKQLDARQWVNEAMKPMN-GKGGGKS 996

Query: 873  HM-AQSGGPNGNKADQAIAGVASFLK 897
             + A       +  ++A+A   S+++
Sbjct: 997  ALNANGQAKIMDHIEEAMAIAESYVR 1022


>gi|326471957|gb|EGD95966.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 963

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/963 (32%), Positives = 479/963 (49%), Gaps = 96/963 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 202 EIHYDRIGGRNAAH-LVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 261 VSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 381 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L  ID   F +A    R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLT-IDDAEFEEA----RLKAKEASKGQAKTASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFRKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S++   D
Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMY-GGYVLHTGFIKYGNFSVNDSVIAEYD 599

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ ++L+ IE
Sbjct: 600 ELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIE 659

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E           
Sbjct: 660 AKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDP 719

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             
Sbjct: 720 RWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGER 779

Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKL 779
                       +D ++KSL   L     + V + +      +I ++    Q    K ++
Sbjct: 780 LNRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEV 839

Query: 780 QLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +  ++ +S          + +  +    + K +   ++ ++ K+ SG  + V  +   K 
Sbjct: 840 KTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKL-SGKALYVFAADTSKV 898

Query: 837 SVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +    VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +
Sbjct: 899 AHGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKY 957

Query: 896 LKK 898
           L+K
Sbjct: 958 LEK 960


>gi|326477176|gb|EGE01186.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 963

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/963 (32%), Positives = 479/963 (49%), Gaps = 96/963 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 202 EIHYDRIGGRNAAH-LVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 261 VSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 381 KQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L  ID   F +A    R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLT-IDDAEFEEA----RLKAKEASKGQAKTASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S++   D
Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMY-GGYVLHTGFIKYGNFSVNDSVIAEYD 599

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ ++L+ IE
Sbjct: 600 ELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIE 659

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E           
Sbjct: 660 AKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDP 719

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             
Sbjct: 720 RWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGER 779

Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKL 779
                       +D ++KSL   L     + V + +      +I ++    Q    K ++
Sbjct: 780 LNRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEV 839

Query: 780 QLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +  ++ +S          + +  +    + K +   ++ ++ K+ SG  + V  +   K 
Sbjct: 840 KTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKL-SGKALYVFAADTSKV 898

Query: 837 SVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +    VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +
Sbjct: 899 AHGCYVTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKY 957

Query: 896 LKK 898
           L+K
Sbjct: 958 LEK 960


>gi|261337332|ref|ZP_05965216.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277705|gb|EFA23559.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 897

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/929 (34%), Positives = 483/929 (51%), Gaps = 69/929 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   +L +F++ GH ++PS+SLI  N PT +FT +GMVPF     G++ P    +
Sbjct: 1   MRTAEIAKRYLNYFEQQGHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSHRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            + QKCVR      D+D VG+T RH TFF+MLGNFSFG YFKE AI  A+DLLT      
Sbjct: 60  ASNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTMPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
               D+ +L++T + +D+EA  LW+   G+  + I  +   DNFW+    GP GPCSEI+
Sbjct: 116 GLGFDKDKLWMTTFTDDDEARALWRNE-GVDPEHIQILGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  F   N + +  L         +IDTG GL
Sbjct: 175 VDRGPEY-GVEGGPIADENRYIEIWDLVFENFMVDNVKSKTDLHIVGELAHKNIDTGAGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+A E++TG+KY  +   +   RV+ DH+RS+  +++D
Sbjct: 234 ERVAYLLQGKQNIYETDEVYPVIEACEKITGIKYGDDKDADVKFRVVADHVRSALMIMSD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N GRGYVLRR++RR +   R+LGY +P+M  LLP     M   YPEL      + 
Sbjct: 294 GVRPSNAGRGYVLRRLIRRTVEAMRVLGYQDPVMPQLLPVSEAAMEPNYPELAATFKDVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIM 401
           E    E++ F +TL  G+ + D  +     ++       ++ GD AF+L+DT+G P+++ 
Sbjct: 354 EAAYGEEDAFRRTLTNGIEIFDMAVKKAKDEDTDSTEPAVITGDTAFQLHDTYGFPIELT 413

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGY 460
            ++   +G+  +D   F + + EQ+SRAR  +L          +   K+       F GY
Sbjct: 414 LEMAAEQGVK-VDEAKFRELMAEQKSRARQDALKKRHNVDLSEYDDFKKTLESPIVFEGY 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTP 519
             +                          S V  I+++GE  V    +   VEV+ D TP
Sbjct: 473 TEVSTR-----------------------SRVIGIMKEGEGSVPAVTAPATVEVILDHTP 509

Query: 520 FYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAEAGGQL D G  I D G  L++ DVQK  + + VH   +  G L     +  +ID +
Sbjct: 510 FYAEAGGQLADEGTIIADDGAVLEVDDVQKPIKDLIVHQCRLVEGTLVVGADVTASIDIE 569

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  ++  H+ATH++H AL   LG H +Q GS   P+ LRFD   S   +   + S+E  
Sbjct: 570 RRGAIARAHTATHIVHKALREELGPHATQRGSEDAPNRLRFDFQWSSAPSKDLMNSVEAR 629

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN+ +  NL V T+ M  +DAIA GA  L G KY D VRVV++  +     S  LCGGTH
Sbjct: 630 VNERLRDNLRVSTQEMKFDDAIALGAMHLFGEKYGDIVRVVTIGDDGW---SRELCGGTH 686

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V   G+I  + I+SE+SI +G+RR++A+ GQ A      +   +  L+  L      +  
Sbjct: 687 VDYAGKIGQINIMSEASIGSGVRRVDALVGQSAYDFSAREHALVSQLSDTLNARPDELAD 746

Query: 759 RVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKS 811
           R+  +  + ++     +   + +L L V DL        + +   +  V        L+ 
Sbjct: 747 RINTLLGKLKESDRRLSAMYESQLSLMVPDLVQQTKQANDTVLVAVKNVGHFGSFDSLRK 806

Query: 812 VMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867
            +  ++ ++ +    ++ L G++ + K  + +   E   +    A  L   +AK LGGGG
Sbjct: 807 TVMDVRNRLGADKPVVVALAGLTDDDKPMIAVATNEAAREQGIKAGALVSAAAKTLGGGG 866

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G G+P  AQ GG +  K D A+A + + +
Sbjct: 867 G-GKPDFAQGGGSDAPKIDDALANLKAQV 894


>gi|330897295|gb|EGH28714.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 642

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/680 (45%), Positives = 412/680 (60%), Gaps = 48/680 (7%)

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115
           Y    T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  
Sbjct: 1   YTRAVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSE 60

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGP 168
           K  +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGP
Sbjct: 61  KWLNLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGP 120

Query: 169 CGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CGPCSEIFFD G  I GG PGS E +G+RYIEIWN VFMQF +        LP  S+DTG
Sbjct: 121 CGPCSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 180

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           MGLER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIA
Sbjct: 181 MGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIA 238

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  I
Sbjct: 239 DGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHI 298

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
           E  L+ E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   
Sbjct: 299 ERVLKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARE 357

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           R L  +D   F + ++ QR RAR+ S      +    + SL +   ATQF GY    GS 
Sbjct: 358 RNLT-LDEAGFEREMDAQRVRARSAS------SFGMDYNSLVKVDVATQFTGYSATTGS- 409

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ
Sbjct: 410 ----------------------ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQ 447

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GD+G       R  ++D  K   G F+HH +V  G L     +   +  + R    +NH
Sbjct: 448 IGDSGFLQAGDARFDVSDTTK-TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNH 506

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLLH AL  +LG HV Q GS +    LRFD +H + I   +L+++ED VN  I +N 
Sbjct: 507 SATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNT 566

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V+T   + + A   GA AL G KY D VRV+S+    GG  S  LCGG H S TG+I L
Sbjct: 567 EVMTEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIAL 622

Query: 708 LYIVSESSIRAGIRRIEAIT 727
             IVSE  + AG+RRIEA+T
Sbjct: 623 FKIVSEGGVAAGVRRIEAVT 642


>gi|317036398|ref|XP_001398230.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS 513.88]
          Length = 1019

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/980 (31%), Positives = 477/980 (48%), Gaps = 117/980 (11%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
                +R TFL++F++NGH  + SS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 70   TSKRVRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAN 129

Query: 58   YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK 
Sbjct: 130  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKI 189

Query: 118  FDLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + LD RRLY+T ++ ++E        A  LW K  G+  D I+     DNFW M + GPC
Sbjct: 190  YGLDPRRLYVTYFEGNKEGGLEPDLEAKDLW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 248

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 249  GPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMG 307

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
             ER+ +VLQ K++NYD D+F  + Q    VTG +                 +RVI DH+R
Sbjct: 308  FERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVR 367

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAYP 338
            +  F I+DG +P N+GRGYV+RR++RR   YAR   G         ++P +  ++G  +P
Sbjct: 368  TLMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFP 427

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
            EL + +  + E L  E+  F KTLDRG    +     +     + L+G   ++LYDT G 
Sbjct: 428  ELRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADVWRLYDTFGF 487

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            P+D+ + +   RGL  ID   F +A    RSRA+  S G    + E +   + +      
Sbjct: 488  PVDLTRIMAEERGL-QIDDREFEEA----RSRAKEASRGQKKTSAETVKLDVHD------ 536

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                      K    +               +++ VKAI          +E   G+++ +
Sbjct: 537  --------LGKLEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDGEQLGI 588

Query: 514  VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            + D+T FYAE GGQ  DTG  + DG   L++ DVQ    G  +H   ++ G      +++
Sbjct: 589  ILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQ-LYAGYVLHTGFMKYGSFSVGDTVI 647

Query: 573  LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
               D   R  +  NH+ TH+L+ AL T+LG  V Q GS +  + LRFD +H   I+  +L
Sbjct: 648  CEYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAISDKDL 707

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV--- 688
              IE+   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E G +   
Sbjct: 708  ARIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELGEILQN 767

Query: 689  --------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736
                     S   CGGTHV  TG+I  L ++ E  I  GIRRI A+TG+ A         
Sbjct: 768  VKDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDAHEVQRLAAE 827

Query: 737  ---------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEY----RKLQ 771
                            ++++ K + + L       V +     R   I +E     + LQ
Sbjct: 828  FQKRLDLLEAMPLTPEKEKEAKQIQAELNQLSISAVQKSAFRERFARINKEVIDGQKALQ 887

Query: 772  LIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829
             + +K  L+         +  D +  ++ +    +SK +   ++ ++ K+    + +L  
Sbjct: 888  KLESKVALETITNYFQAPENQDRSWLVAKLPISANSKAISESLNYVKSKLPDKSVYVLAA 947

Query: 830  ISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGG----------GGGGGRPHMAQSG 878
             + + + +    V         +A + A + +  +GG          G G          
Sbjct: 948  STDQGRVAHGCYVSKSSSEAGASASEWAAIVSGAVGGKAGGKGATSVGNG---------- 997

Query: 879  GPNGNKADQAIAGVASFLKK 898
              N ++ D+A++  + +L K
Sbjct: 998  -VNPDRVDEAVSLASDYLGK 1016


>gi|281208624|gb|EFA82800.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 958

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/976 (30%), Positives = 466/976 (47%), Gaps = 103/976 (10%)

Query: 1   MSNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           +  V+ IR TF++FF     H  +PSS ++P +DPTL+F N+GM  FK IF GQ  P   
Sbjct: 5   VPTVNEIRKTFIDFFVNKCEHTFVPSSQVVPHDDPTLLFANAGMNQFKPIFLGQADPRSE 64

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
               +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI  AW+LL
Sbjct: 65  QAKLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKREAITWAWELL 124

Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T  + LD+ RLY + +        + D EA  +W++   L AD+++     +NFW M +T
Sbjct: 125 TDVYKLDKERLYASYFGGAADKGLEPDLEAKSIWEEF--LPADRVLPFGMKENFWEMGDT 182

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI FD+ E   G     + +    IEIWNLVF+Q+ ++  +    LP   +DT
Sbjct: 183 GPCGPCSEIHFDKIEGRTGSQALVNADDPTLIEIWNLVFIQYNREADKSLRPLPNKHVDT 242

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGN--------NIVNHRVIV 276
           GMGLER+ +++Q+   NYD D+F  +    ++VTG    Y G           + +RVI 
Sbjct: 243 GMGLERVTSIIQKVGTNYDTDIFGPIFTEIQKVTGFTEPYGGKVGKDDPEQVDMAYRVIA 302

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335
           DH+R+ +F +ADG +P+++GRG VLRRI+RRA+ Y +  L         L+  +    G 
Sbjct: 303 DHIRTLTFSLADGAIPSSDGRGSVLRRILRRAIRYGKQKLKAPPGFFHRLVDVVVAHFGE 362

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
            +PEL      I   + SE++ F +TLD+G++  + +L     + +++   A  L  + G
Sbjct: 363 FFPELRSRPQHIISVIESEEKMFERTLDKGILEFENILKKTS-NGVISASHAHYLSSSFG 421

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +   +G+  +D+  +   +E+    +R       S                 
Sbjct: 422 FPIDLTTLMAEEKGVK-VDLKGYEVLVEKFAEDSRRRQKEKKSE---------------- 464

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VE 512
             +       S   K   +    +   +    V ++VKAI    E++++  +  K   V 
Sbjct: 465 --LNLGAEPISILQKRSIQPTNDQYKYE-QKEVQTVVKAIWTGKELIDQLTAEHKNTLVG 521

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGI--LRT 567
           V+ + T FY E GGQ+ D G             ++D  K   G  +H   +      L  
Sbjct: 522 VILESTNFYPEQGGQIYDIGNINFVDSQNTAFTVSDC-KVFGGYVLHIGYISDDCDKLAV 580

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +  T+DY  R  +  NH++TH+++ AL  +LGS V Q GS +    LRFD + +K +
Sbjct: 581 GDKVETTVDYTRRIPIMSNHTSTHMVNFALRQVLGSTVDQRGSLVDNTRLRFDFSSTKGM 640

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS------ 680
           +  EL   +  VN++IA+ L V  + +    A    G  A+ G  Y D VRVVS      
Sbjct: 641 SKDELVKTDAIVNELIAKQLNVYCKDVELASAKKIYGLRAVFGEVYPDPVRVVSVGVDVN 700

Query: 681 -----VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
                    +   +S   CGGTH++++ E  L  IVSE ++ AG+RR+ A+TG  A    
Sbjct: 701 DLLANPSNTEWANYSIEFCGGTHIANSKEAELFTIVSEEAVSAGVRRLFAVTGTDASVVY 760

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--------RKLQLIHAKRKLQLNV---- 783
               +   +     K++  ++   V  +            ++++L+     LQ  V    
Sbjct: 761 DNNRKLETAFTDAAKLTGKDLKDHVPSLLALLESHPVSASKRIELLEKLNNLQTTVKKYF 820

Query: 784 EDLSCHKIADVN-FMSHIIS----------------EVDSKELKSVMDALQKKIQSGIIM 826
           ++L    I+D N  +  II+                 +++  +   +  +QKK     IM
Sbjct: 821 KELESSSISDSNKVVDEIIAQLTESKAPVHVGVINLGLNNSAITDAIKNVQKKCPDTAIM 880

Query: 827 LVGISKEKKASVLIVV----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            V   +EKK   ++ +    +        A       A+ L GG GGG+  +AQ  G   
Sbjct: 881 FVSPDQEKKKVCVLSIVPPTSTAASKGLTANGWVVKVAEQL-GGKGGGKTDVAQGTGSQI 939

Query: 883 NKADQAIAGVASFLKK 898
              D A+     F KK
Sbjct: 940 ENVDNAVEFAKDFAKK 955


>gi|296122797|ref|YP_003630575.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015137|gb|ADG68376.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 870

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/916 (33%), Positives = 473/916 (51%), Gaps = 71/916 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L+FF   G    PS  L+P +DPT++FT +GM  FKN F G     +   
Sbjct: 1   MKTDELREKYLDFFVGKGCLRRPSDVLVPKDDPTVLFTPAGMNQFKNQFLGIGPLDFTKA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+ NVG T+ HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DISNVGVTSYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP-----CGPCSE 174
           L+  RL +T Y +D+EA  +W+   GL + +I R    +NFW            CGPCSE
Sbjct: 117 LEPSRLTVTAYLDDDEAVGIWQNEIGLDSKQITREDEYENFWPAGSPTNGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFILPKMSIDTGMGLER 232
           I++             +    + +EIWNLVF QF +          LPK +IDTGMGLER
Sbjct: 177 IYY-------------TPPSGKKVEIWNLVFTQFNRVGDPPNNLRPLPKKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGI 290
            A V+Q   +NY+ID+ + L     ++ G+KY+  + V    R I DH+R+ +F I +G 
Sbjct: 224 TAAVMQGFESNYEIDILRPLCDRGGEILGVKYDFASPVGRPLRRIADHVRACTFAIHEGC 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           +P  E   Y++R ++RRA     LLG  EP +  L+P +   M   YPEL Q    +   
Sbjct: 284 VPGPEKENYIIRLLLRRASMEGFLLGKREPFLSQLVPMIAEVMRKPYPELHQTIEAVSHV 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE+++F   ++RGL     ++          L+GD AF L+ T G  +++ + +    
Sbjct: 344 IESEEKQFLGVVERGLTKFRKLVDQARSANRTSLSGDEAFDLHQTDGFLIELTETLAAQE 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           G++ +D+  F +  EE +  +   +      +   I     +K G T+F+GY+ +     
Sbjct: 404 GVS-VDMARFKECREEAKKASGRGAFADSVMSEGPI--DALKKSGGTEFLGYEAIES--- 457

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQ 527
                                + ++ I+   ++ E   S    + +V D+TPFY E+GGQ
Sbjct: 458 --------------------KATIRGIIADKKLAESYSSPLVTIGIVLDKTPFYGESGGQ 497

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           +GDTG          + D QK  E +FVH   ++ G L+    +   +D   R  +   H
Sbjct: 498 VGDTGTIRTASGEFTVYDTQKDGE-LFVHIGQLKAGSLKVGEEVTAGVDAHRRAAIRRAH 556

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH+LHHAL T LG + +Q GS +  D LRFD  H + +T+ EL SIED +N +IA+  
Sbjct: 557 SATHILHHALRTTLGENATQRGSKVEGDQLRFDFAHPRSLTNEELISIEDQINQLIAEGA 616

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P+ TR+M   +A   GA AL G KY D VRVV +     G  S   CGGTH+S+TG++ +
Sbjct: 617 PINTRVMPINEAKKLGAMALFGEKYPDFVRVVEM-----GDFSREFCGGTHLSNTGQVGI 671

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766
             +V +  + AG+RRI  +TG +A + +   +  L+ +   +K  +   +  +V  + +E
Sbjct: 672 CRVVKDELVAAGVRRISCVTGPKAIARMRESENLLREVGMLVKATTAEELPRKVAALQDE 731

Query: 767 YRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            R  +   ++   Q               + D+  + H   E+  ++LK ++D ++ +  
Sbjct: 732 LRVAKKELSQYASQSLAGMAAKLVNDAPMVGDIKVIVHRADELAREQLKELVDQIRAQAG 791

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
           S  + LVG + + K S++   T+DL  RF+A D  + +AK++GGGGG GR  +A++GG  
Sbjct: 792 SAAV-LVGQAVDGKVSLIAGATKDLAQRFSASDAVKAAAKLVGGGGG-GRAELAEAGGKI 849

Query: 882 GNKADQAIAGVASFLK 897
             K D+A+    +FLK
Sbjct: 850 PEKLDEALQEGLAFLK 865


>gi|296454023|ref|YP_003661166.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183454|gb|ADH00336.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 871

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/905 (34%), Positives = 484/905 (53%), Gaps = 64/905 (7%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82
           +PS+SLI  N PT +FT +GMVPF     G++ P  + +T+ QKCVR      D+D VG+
Sbjct: 1   MPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSNQKCVRT----LDIDEVGK 55

Query: 83  TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137
           T RH TFF+MLGNFS G YFKE AI  AW+LLT       +  D  +L++T + +DEEA 
Sbjct: 56  TTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQSEGGYGFDPEKLWVTTFTDDEEAR 115

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
            +WK   G   + +      DNFW+    GP GPCSEI+ D+G    G   G + +  R+
Sbjct: 116 SIWKNE-GFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDRGPEY-GRDGGPAADETRF 173

Query: 198 IEIWNLVFMQFEQQNKQERFILP------KMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           IEIW+LVF  +E  N + +  L       + +IDTG GLER+A ++Q K N Y+ D    
Sbjct: 174 IEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLERLAYLMQGKQNIYETDEVFP 233

Query: 252 LIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           +I+A+E+++G KY  +    V  RV+ DH+RS+  +++DG+ P+N GRGYVLRR++RR +
Sbjct: 234 VIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGVRPSNVGRGYVLRRLLRRTV 293

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              R+LG T+P++  LLP     M ++YPEL      + E    E++ F +TL+ G+ +L
Sbjct: 294 QAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEAAYGEEDAFRRTLENGIEIL 353

Query: 370 DGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           D  +    K  D +++G  AF L+DT+G P+++  ++   +G+  +D   F + + EQ+S
Sbjct: 354 DVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQGVK-VDEAKFRELMAEQKS 412

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
           RARA +L         ++   K+       F+GY  +                       
Sbjct: 413 RARADALKKRHNVDLSVYDDFKKTLVSPIDFLGYTDM----------------------- 449

Query: 487 GVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQIT 544
              + V  I+Q+G+    AV+G   VEV+ D+TPFYAEAGGQL D G  + D G  L++ 
Sbjct: 450 SARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAVLEVD 509

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DVQK  + + VH   +  G L     +   ID   R  ++ +H+ATH++H AL   LG  
Sbjct: 510 DVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREELGPQ 569

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
            +Q GS   P+ LRFD   SK    + + ++E+ VND +  NL V T+ M  +DAIA GA
Sbjct: 570 ATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAIALGA 629

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             L G KY D VRVVS+  +     S  LCGGTHV   G+I ++ I+SE+SI +G+RR++
Sbjct: 630 MHLFGEKYGDIVRVVSIGEDGW---SRELCGGTHVDHVGKIGMVNILSEASIGSGVRRVD 686

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQL 781
           A+ GQ A      +   +  L+  L      +  RV  +  + ++     A   + +L  
Sbjct: 687 AVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLAKLKESDRRLASMYESQLAA 746

Query: 782 NVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKKIQSG---IIMLVGISKEK 834
           +V  L          +   +  V        L+  +  ++ ++      ++ L G++++ 
Sbjct: 747 SVPALVADTKNSAAPVKVAVKNVGHFGAVDALRKTVLDVRAQLGEDAPVVVALAGVNEDD 806

Query: 835 KASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K  V +   E        A DL R +AKVLGGGGG G+P  AQ GG + +K  +A+  + 
Sbjct: 807 KPMVAVATNEAARKAGIKAGDLVRGAAKVLGGGGG-GKPDFAQGGGVDASKIGEALEALK 865

Query: 894 SFLKK 898
              +K
Sbjct: 866 HEAQK 870


>gi|320588479|gb|EFX00948.1| alanyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 1117

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 476/966 (49%), Gaps = 95/966 (9%)

Query: 6    SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKP--VYQA 60
             +R TFLE+F+K GH ++PSSS++P NDPTL+FTN+GM  FK IF G   +  P    + 
Sbjct: 167  KVRQTFLEYFEKKGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVAKADPLSSLKR 226

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
                QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+++WDLLT  + L
Sbjct: 227  AVDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMSWDLLTNVYGL 286

Query: 121  DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            D  RLY+T ++ +         EA  LW  + G+  D I+     DNFW M + GPCGPC
Sbjct: 287  DPARLYVTYFEGNPAMGLEPDLEAKNLWLSV-GVPEDHILPGNMKDNFWEMGDQGPCGPC 345

Query: 173  SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            SE+ +D+           +++    +E+WN VF+QF++Q  +    LP   +DTGMG ER
Sbjct: 346  SEVHYDKVGGGRNASSLVNQDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMGFER 405

Query: 233  MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
            + + LQ+K +NY  D+F  L    ++VTG +   +             +RV+ DH+R  +
Sbjct: 406  LVSALQDKISNYATDIFTPLFDRIQEVTGARPYTDKYGKDDVDGIDTAYRVVADHIRLLT 465

Query: 284  FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELI 341
            F +ADG +P N+GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PE+ 
Sbjct: 466  FSMADGAVPNNDGRGYVVRRVLRRGVRYARKYFGAEIGSFFSQILPALVDQMGHQFPEIA 525

Query: 342  QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399
            + +  I+E L  E+E F +TLDRG    +   +   K   + L+G   ++LYDT G P D
Sbjct: 526  KKQKDIKEILDEEEEAFSRTLDRGERQFEKYAAATAKSGAKTLSGADVWRLYDTFGFPED 585

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            + Q +   RGL+ ID       +   R RAR  S  +                    F  
Sbjct: 586  LTQLMAEERGLS-IDAE----EVAVARERAREASKSVKEAVQ--------------TFAK 626

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEVVFD 516
             ++ + ++   E + V        L   + S V+ I      V   ++  +   + ++ D
Sbjct: 627  LNVHQIAELENEHKIVRPSSEAKYLRGDLHSRVELIYTGTGFVKTTKDIPANTPLGILVD 686

Query: 517  QTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +T FYAE+GGQ+ DTG  + D +   ++ DVQ+   G  VH+  +E G L +  +++   
Sbjct: 687  KTNFYAESGGQVADTGRIVIDDVAEFKVLDVQEY-GGYVVHNGYLEYGELSSGDNVICEY 745

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            +   R  +  NH+ TH+L+HAL  +LG  V+Q GS +  D LRFD +H   ++ AE+K I
Sbjct: 746  EELRRAPIRNNHTGTHVLNHALREVLGDDVNQKGSLVDQDKLRFDFSHKSAVSLAEIKKI 805

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEY 683
            E+  N  I +NL V  + ++   A    G  A+ G  Y D VR           + + + 
Sbjct: 806  EELANANIQRNLKVFYKDVDLASAREIEGVRAVFGETYPDPVRVVSVGVDVDELLRTPKK 865

Query: 684  EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             +   +S   CGGTHV  TG I  + +V ES I  GIRRI A TG  A        +  +
Sbjct: 866  AEWRGYSVEFCGGTHVEQTGLIKDVVVVEESGIAKGIRRIVAYTGDAAHRVQREATQFQE 925

Query: 744  SLASFLKVS-------------------------QGNVVGRVEEIWEEYRKLQLIHAKRK 778
             + +  K+                          +  +  R  ++ ++         K +
Sbjct: 926  RIEAIEKLPFGPEKETEIKAAQHDLNQLAISALAKEELRTRFAKVQKDVLDELKKRQKAE 985

Query: 779  LQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK- 832
            L+  V  ++ H     N     F+ H+    ++K +  VM+  + K +   + + G S  
Sbjct: 986  LKAAVGAVTDHFAKPDNKESKVFVGHLPISANAKAISEVMNHFKTKDKERSVYVFGGSPS 1045

Query: 833  EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            E     + V T        A   +   + V+ GG  GG+    Q  G    K +  +   
Sbjct: 1046 EGVVHGVYVGTHLASKGVTAEQWSTAVSDVV-GGKAGGKEPTRQGSGTKPEKLEDGVKRA 1104

Query: 893  ASFLKK 898
              +L +
Sbjct: 1105 EEWLAE 1110


>gi|331232484|ref|XP_003328904.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309307894|gb|EFP84485.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 969

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/984 (31%), Positives = 457/984 (46%), Gaps = 125/984 (12%)

Query: 1   MSNVSS-----------IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN 48
           MS+ +            +R TF E+FQ ++ H  + SSS++P +DPTL+F N+GM  +K 
Sbjct: 1   MSSTNQTSQFGDWPAHKVRKTFFEYFQNQHAHTFVHSSSVVPFDDPTLLFANAGMNQYKP 60

Query: 49  IFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK 103
           IF G   P +           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK
Sbjct: 61  IFLGTIDPSHPFKNLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 120

Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRIT 155
             AI +AWDLLT+ + L + RLY+T +  D         E+ ++W  + G+  DK++   
Sbjct: 121 SEAIHMAWDLLTRVYALPKDRLYVTYFQGDPAQNLLPDLESKQIWIDL-GVHPDKVLPGN 179

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
             DNFW M  +GPCGPCSEI +D+           +++    +EIWN VF+Q+ ++    
Sbjct: 180 AKDNFWEMGTSGPCGPCSEIHYDRVGG-RNAAELVNQDDPMVLEIWNNVFIQYNREPSGS 238

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------- 268
              LP   +DTGMG ER+ +VLQ+KT+NYD D+FK L    +++TG +            
Sbjct: 239 LKPLPARHVDTGMGFERLVSVLQDKTSNYDTDVFKPLFDRIQELTGARPYAGKLGEDDVD 298

Query: 269 --IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG--YTEPLMMH 324
                +RVI DH+R+ +F I+DG +P N GRGYVLRRI+RR   Y R             
Sbjct: 299 GIDTAYRVIADHVRTLTFAISDGGVPNNVGRGYVLRRILRRGARYVRKKFDVPIGNFFSR 358

Query: 325 LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--L 382
           L P L  +MG  +PE+      ++E L  E+  F  TLDRG  + +       K+    L
Sbjct: 359 LAPTLIDQMGDVFPEIRSKTEELKEILDEEEASFALTLDRGEKMFEKYAEKAKKEGKKNL 418

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G   ++LYDT+G P+D+   +     L GID   F  A    +  ++     +     E
Sbjct: 419 DGQDVWRLYDTYGFPVDLTLLMAEEARL-GIDHDGFEMAQAASKELSKGGKKKVVGTAVE 477

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI- 501
               ++ E                     D+           ++ +++ VKAI   G+  
Sbjct: 478 LDVHAIAE-----------------LESNDKVPKTDDSSKFASSSITATVKAIYYDGKFH 520

Query: 502 --VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHH 557
              E   S  +  ++ D+T FYAE GGQ  DTG            + DVQ    G  +H 
Sbjct: 521 SSTEAVPSSSRCGIILDKTNFYAEQGGQENDTGSLTNPEKQTTFDVEDVQ-VYNGYVLHS 579

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +V  G+L+   S+    D   R  +  NH+ TH+L+ AL   LG H+ Q GS + P  L
Sbjct: 580 GLVSEGVLQVGDSVSAAYDELRRWPIRNNHTGTHVLNWALRETLGDHIDQKGSLVAPSKL 639

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRV 676
           RFD +H + +T  EL  IE   N  I+++ PV  R M  ++A    G  A+ G  Y D V
Sbjct: 640 RFDFSHKQQVTIDELSKIESTCNQWISKSFPVAAREMRLDEAKKIPGLRAVFGEAYPDPV 699

Query: 677 RVVSVE------------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           RVV V                   +S   CGGTHV  T EI  L +V ES I  G+RRI 
Sbjct: 700 RVVVVGPNPFDLLDADLTDPKWSNYSVEFCGGTHVKLTSEIKQLVLVEESGIAKGVRRIV 759

Query: 725 AITGQRARSHLMGQDEK-----------LKSLASFLKVSQGNVVG-------------RV 760
           A+TG+ ARS      +            +K   + LK     +               + 
Sbjct: 760 AVTGEEARSVSQQAKDIEAKLDQIIGLPVKDREAALKTFSVELAALEISVILKSKLKLKF 819

Query: 761 EEIWEEYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQ 817
            +  +E  +L  I AK   K  L V +    +  +   M+ ++    +SK L      L+
Sbjct: 820 SQAQKELVELAKIQAKADEKKALQVVNDWIKEHPNERVMTSVLDLGSNSKALGVACGQLK 879

Query: 818 KKIQSGIIMLVGISK-EKKASVLIVVTE-DLLDR--FNAVDLARLSAKVL------GGGG 867
              ++G   L  ++  +KK      + E DL  +  +NA       +KVL          
Sbjct: 880 SSGKAG--YLFSVNALDKKVFHASALPEQDLKAKPSWNAKLWMDQVSKVLGGKGGGK--- 934

Query: 868 GGGRPHMAQSGGPN--GNKADQAI 889
               P +AQ  G        DQA+
Sbjct: 935 ----PELAQGVGTYSGTENLDQAV 954


>gi|326434145|gb|EGD79715.1| alanyl-tRNA synthetase [Salpingoeca sp. ATCC 50818]
          Length = 955

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/960 (31%), Positives = 469/960 (48%), Gaps = 81/960 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-----PV 57
               +R  F+ +F++ GH+  PSSS IP NDPTL+F N+GM  +K  F G +        
Sbjct: 9   TADKVRGKFISYFEERGHKFWPSSSTIPFNDPTLLFANAGMNQYKAKFLGTDSKDTDLGK 68

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y+KE AI  +WDLLT  
Sbjct: 69  LTRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYWKEEAIDFSWDLLTNV 128

Query: 118 FDLDQRRLYITVYDED------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           F LD  RLYIT ++ D      EE   LW K   +  ++I+     DNFW M ETGPCGP
Sbjct: 129 FQLDPNRLYITYFEGDSVVPADEETRSLWMK--HVPPERILPFDRKDNFWEMGETGPCGP 186

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI +D+           + +    +EIWNLVFMQ+  +       LP   +DTGMGLE
Sbjct: 187 CTEIHYDRIGG-RDASHLVNMDDPDVLEIWNLVFMQYNNEGNGVLKTLPAQHVDTGMGLE 245

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSS 282
           R+ +VLQ KT+NYD DLF  +  A ++  G +                 +RV+ DH+R+ 
Sbjct: 246 RILSVLQNKTSNYDTDLFLPIFAAIKEKCGCREYTGKVNEADTDMVDTAYRVVADHIRTL 305

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
              IADG  P  +GRGY+LR ++RRA+ +    LG  E     L+P +   +G A+PEL 
Sbjct: 306 CIAIADGGRPDKDGRGYILRLVLRRAIRFCEEYLGAPEYFFASLVPVVVDVLGDAFPELR 365

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
           +        L+ E+ +F +TL RG       ++ +G+D +++GD A++L+DT+G P+ + 
Sbjct: 366 KDPEETIAVLKEEERQFRRTLSRGRRYFKRAVAAVGEDGVIDGDTAWRLWDTYGFPIHLT 425

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
             +   RGL  +D+  F  A       +RA     G    +    +L E       +   
Sbjct: 426 IVMAEERGLK-VDMDGFEAAKARAVEISRAGGAA-GETNLDLDVNTLDE-------LKKK 476

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--EAVSGQK---VEVVFD 516
            + G+    +      +      ++   +++  + ++G +V+        +   V VV D
Sbjct: 477 GVPGTDDAAKYAYTRDENGSYSFSDAEGTVLALLTEEGGLVDRVSVSEDDEELPVGVVLD 536

Query: 517 QTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +T FYAE GGQ+ DTG      G  + L + +VQK+     +H A + +G L+    L L
Sbjct: 537 KTNFYAEQGGQIYDTGRFESTTGAPLELDVFNVQKR-GAYCLHVATLAQGELKVGDKLTL 595

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D+  RR    NH+ATH+L++AL ++LG    Q GS + P+ LRFD T  K +T  +LK
Sbjct: 596 KFDHDRRRPCMSNHTATHVLNYALRSVLGE-ADQKGSLVEPERLRFDFTAKKGMTPEQLK 654

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGG----- 687
             E+ VN I+  N  V  +      A A +G  A+ G  Y D VRV+SV           
Sbjct: 655 QTEEVVNKIVNANYTVYDKDTPLAQARAINGLRAMFGETYPDPVRVLSVGASIDDMVADP 714

Query: 688 ------VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                  +S   CGGTHV ++G+I    I+SE ++  GIRRI A+TGQ A       D  
Sbjct: 715 AASYAVDYSVEFCGGTHVKNSGDIGPFTILSEEAVAKGIRRIVAVTGQEALKAHRAADAY 774

Query: 742 LKSLASFLKVSQGNVVG-----------RVEEIWEEYRKL-----QLIHAKRKLQLNVED 785
            + +   L   +   +            R EE+    + +     +   A+RK +     
Sbjct: 775 ERRIRDDLDAKEVTSLDAELGTATIPAVRKEEMRARLKAMSKKHAEARLAERKAKAAHAK 834

Query: 786 LSCHKIADVNFMSHIIS----EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
              +++ +      ++       ++K +   +  L+KK+     M  G ++E   +    
Sbjct: 835 TRANELIEEKPEGFVVETLDVGANAKAIGEALKLLKKKLPDVAFMFFG-AEEGAVAYTCQ 893

Query: 842 VTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHM-AQSGGPNGNKADQAIAGVASFLKK 898
           V + ++D     A +  +   +VLGG G  G   + AQ    +  K   A     +++++
Sbjct: 894 VPKAMVDEKGIKASEWIKRVNEVLGGRG--GGRDLVAQGTADDSTKLTLAQEAARAYIEE 951


>gi|256077790|ref|XP_002575183.1| alanyl-tRNA synthetase [Schistosoma mansoni]
 gi|238660414|emb|CAZ31416.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 980

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/980 (31%), Positives = 468/980 (47%), Gaps = 106/980 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F EFF+  GH  + SSS IP NDPTL+F N+GM  +K IF G   P      
Sbjct: 6   TAKELRKQFFEFFESKGHVYVHSSSTIPHNDPTLLFANAGMNQYKPIFQGTVDPNSELGR 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ A + AW+LLT+ 
Sbjct: 66  LKRSYNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACEWAWELLTEV 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY+T +          DEEA  +W  I GL  D ++     +NFW M ETGPC
Sbjct: 126 WKIPSERLYVTYFGGDISNGLPADEEARDIWISI-GLPKDHVLPFGMKENFWEMGETGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+QF ++       LP   IDTGMG
Sbjct: 185 GPCSEIHYDRVGD-RDAAHLVNQDDPDVLEIWNLVFIQFNREEGGSLKPLPAKHIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280
            ER+ +VLQ K +NYD DLF  L +  E  T         G++      + +RV+ DH R
Sbjct: 244 FERVLSVLQNKRSNYDTDLFVPLFKTIEAGTNTRPYTGKVGVEDTDKIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  + DG    N GRGYV+RRI+RRA+ +A  +L      +  L+  +   +G  +PE
Sbjct: 304 VLTIALGDGGRAQNTGRGYVIRRILRRAVRFAVEVLNAKPGFLATLVDIVIETLGDTFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG----KDEILNGDVAFKLYDTHG 395
           + +    I+E +  E+E+F  TL RG    D V+  L      +  L+G+VA+ LY+T+G
Sbjct: 364 ITRDPDTIKELINEEEEQFLVTLKRGRRFFDRVIKDLKASGSNNTTLSGEVAWGLYETYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ Q +     L  ID+  + +A EE + R++      G    +    +L E     
Sbjct: 424 FPLDLTQILAEEHHLK-IDLNGYEKAKEEAQIRSQ-SRKCTGGSIIDLTVHALAELKSKN 481

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQKVEVV 514
             +  D         E            +     + V AI+ + + VE   +S Q   ++
Sbjct: 482 ISVTDDS--------EKFVYTSDLNGNYVFPDSEATVLAILYENKFVESVDLSSQMCGII 533

Query: 515 FDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            ++T FYAE+GGQL D G       +     ++DVQ +  G  +H   +  G L     +
Sbjct: 534 LNKTIFYAESGGQLYDHGFITSLTDEVTEFSVSDVQCR-GGYILHIGNL-HGKLIVGNRV 591

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +L++D   R  L  NH+ TH+L+ AL  ++     Q GS + PD LRFD T  + +T  E
Sbjct: 592 LLSLDTVRRTALMRNHTGTHVLNFALRELVDES-EQKGSLVAPDRLRFDFTAKRGMTRDE 650

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681
           L   E+  + +I++ L V +  ++   A    G  A+ G  Y D VRVVS+         
Sbjct: 651 LAKAEEICDTMISKRLNVYSSNVSLSYAKTIQGVRAVFGEAYPDPVRVVSIGVPVTSLVA 710

Query: 682 --EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
             E   G   S   CGGTHV +T  I +L IVSE +I  G+RRI A+TG  A        
Sbjct: 711 DPETGYGKTTSVEFCGGTHVLNTKHIGVLVIVSEEAISKGVRRIIALTGHEAERAQKEAL 770

Query: 740 EKLKSLASFLK--------------------------VSQGNVVGRV-------EEIWEE 766
                +  F+K                           +    V R        E + E+
Sbjct: 771 RLDNEVNEFIKLVNQSISLHQNHNNNITDDFNINRQMSNLSEHVSRAVISQHHRENLREK 830

Query: 767 Y-RKLQLIHAKRKLQ--------LNVEDLSCHKIAD--VNFMSHIIS-EVDSKELKSVMD 814
             +  +L+ A+ K          L    L    +A+   N++ H+   + ++K + S + 
Sbjct: 831 LFKAKKLLDARDKASKTAITSKVLEEARLLGESLANSPSNYIIHVFDAQSNTKIMNSAIK 890

Query: 815 ALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
            +++   +  +M++      KK +VL  V + L  R   A++     +K +  G GGG+ 
Sbjct: 891 EIERICPNKAVMVISSDLTSKKLTVLCQVPKVLFSRGLKAMNGVTHISKTM-DGKGGGKE 949

Query: 873 HMAQSGGPNGNKADQAIAGV 892
           + AQ+ G   +  D+ I   
Sbjct: 950 NSAQAVGSRIDTLDEVIHLA 969


>gi|296806327|ref|XP_002843973.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238845275|gb|EEQ34937.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 963

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/963 (32%), Positives = 480/963 (49%), Gaps = 96/963 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTIDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PERLYVTYFEGNEGAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   IDTG+G ER+
Sbjct: 202 EIHYDRIGGRNAAH-LVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNKHIDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ+K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F
Sbjct: 261 VSILQDKSSNYDTDVFTPLFTAIQNITGARRYTGKFGAEDTDGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYLKVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 381 KQNDVMEILDEEEVSFAKTLDRGERQFEYYAQQALEAGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L  ID   F +A    R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLT-IDDAEFEEA----RLKAKEASKGQAKTASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPANEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I DG   L + +VQ    G  +H   ++ G      S++   D
Sbjct: 541 TNFYAEQGGQEYDTGKIIIDGQAELDVQNVQMY-GGYVLHTGFIKYGNFSVNDSVIAEYD 599

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE
Sbjct: 600 ELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAVSDSDLEKIE 659

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E           
Sbjct: 660 AKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDP 719

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             
Sbjct: 720 RWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRVAREFGER 779

Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKL 779
                       +D ++KSL   L     + V + +      +I ++    Q    K ++
Sbjct: 780 LNRFEKMAAGPERDAEVKSLQVDLNQLTISAVEKAKYRNQFTQIHKKITDAQKAAQKAEV 839

Query: 780 QLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +  ++ +S          + +  +    + K +   +  ++ K+ SG  + V  +   K 
Sbjct: 840 KTAIDAISSYFEQNKDSQSLVIKLPISANQKAISESLAHVKSKL-SGKALYVFAADTSKV 898

Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           +    VT DL  +  +A + A   + ++ GG  GG+  +A   G   NK D+A+     +
Sbjct: 899 AHGCYVTPDLTAKGASANEWASAVSGIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKY 957

Query: 896 LKK 898
           L+K
Sbjct: 958 LEK 960


>gi|87307364|ref|ZP_01089509.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87290104|gb|EAQ81993.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 937

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/962 (31%), Positives = 461/962 (47%), Gaps = 125/962 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L F++  GH    S  L+P  DP+++FT +GM  FK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLSFYETKGHSRRASDVLVPTWDPSVLFTPAGMNQFKDHFLGRVKLDFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFK  AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DIDNVGRTAYHHTFFEMLGNFSFGDYFKPEAISWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSE 174
           L   +L +TVY +D+EA   W +  GL   +I R+  ++NFW          G CGPCSE
Sbjct: 117 LPADQLTVTVYKDDDEAADYWHEKIGLPTSRIHRLEEDENFWPASAPSLGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFILPKMSIDTGMGLER 232
           I+F                G   +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYFHPK-------------GSSPVEIWNLVFTQFNRVGDPPNNLEPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290
            A  LQ    NY ID+ + +++A+ ++ G+KY  E +N    R I DH+R+ +F I + +
Sbjct: 224 TAATLQGVATNYHIDILRPIVEAAGEICGVKYVPEDDNGRRLRRITDHVRACTFAIHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P      YV+RR++RRA+     +G  EP    L+  +   M + YPEL +    +   
Sbjct: 284 YPGANKEKYVIRRLLRRAVLDGHQMGLREPFAYQLVDKVAEMMKAGYPELQETTQRVANV 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +R+E+E F   LD GL   + V + + KD   I++G+ A +LY T+G P ++ + +   +
Sbjct: 344 IRTEEENFLDRLDDGLARTEKVFNTMRKDNLTIVDGNDAAELYQTYGFPPELFEQVAAEK 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
           GLA  D   +  A+E+          G     T     SLK     T ++GYD       
Sbjct: 404 GLA-FDWPGYKAAMEKFGE---ETGGGTSVLFTTGPIESLKNTLRKTDYVGYDQSEAD-- 457

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                 V  +       +G S +     Q GE          + VV D TPFY E+GGQ+
Sbjct: 458 ------VTIKGIVAHDADGASKLFDDYDQTGEA-------HPLIVVTDCTPFYGESGGQV 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD+G  +G   R  +TD QK ++ +F+HH  +  G + +       +  + R  +   HS
Sbjct: 505 GDSGEIVGAAFRFVVTDTQKDSD-LFLHHGYLASGKISSNTDAKAIV-GERRLGIQRAHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH+AL   LG+H  Q GS +  D LRFD T+   +T  +L +IE++VN+ +  +  
Sbjct: 563 ATHILHYALQKNLGAHAQQQGSKVDEDWLRFDFTNLAAVTPEQLAAIEEDVNERVEASEK 622

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           V    +    A   GA  L G KY D VR+VS+     G  S  LCGGTH++STG++ + 
Sbjct: 623 VKWETVPLAKARELGAMMLFGEKYPDPVRLVSM-----GTFSRELCGGTHLTSTGDVGMF 677

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++SE    AG+RRI A+TG +A+ +       L  +A  L V   +V   V+E+ +  R
Sbjct: 678 EVISEEGPSAGVRRIVALTGTKAKEYRQQVAASLGDIAKSLGVHTLDVPVAVKELMQYVR 737

Query: 769 KLQL----------------IHAKRK--LQLNVEDLSCHKIADVNF--------MSHIIS 802
            L+                  HAK         ++        +N         ++ ++S
Sbjct: 738 DLKKAASGSGQPPEDLRLPTEHAKAAPPSYAAQKETLKETARMINVGMFDAPARIAALLS 797

Query: 803 EVD-----------------------------------------SKELKSVMDALQKKIQ 821
           ++D                                            ++ ++D L+KK  
Sbjct: 798 DIDSLKQEIVARAEIGVLTADDLLAQAELIGDVKLIVAEAPGANPNVMRQLIDQLRKKAA 857

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              ++L+    E K  ++  +++D++     A +  +  + ++ GG GGGRP MAQ+GG 
Sbjct: 858 PCAVLLIAGQGEDKVMMVAGLSQDVVKSGGKAGEWVKTVSTIV-GGSGGGRPDMAQAGGK 916

Query: 881 NG 882
           + 
Sbjct: 917 DP 918


>gi|66816759|ref|XP_642382.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74856597|sp|Q54Y20|SYAC_DICDI RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|60470104|gb|EAL68084.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 946

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/968 (30%), Positives = 459/968 (47%), Gaps = 112/968 (11%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
            +V+ IR TF++FF++   H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P    
Sbjct: 1   MDVNQIRKTFIDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 61  AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW +   L  ++++     +NFW M + G
Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+ E    G    + +    IEIWNLVF+Q+ ++  +    LP+  +DTG
Sbjct: 179 PCGPCSEIHYDKVEG-RDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT----------GMKYEGNNIVNHRVIVD 277
           MGLER+ +++Q+   NYD D+F  +  A ++VT          G +      + +RVI D
Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG  P+ +GRG VLRRI+RRA+ Y +  L         L+  +    G  
Sbjct: 298 HIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVIANFGEF 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +    I+  L  E++ F KTL++G+V  + ++     +  L+ + A+ L   +G 
Sbjct: 358 FPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTCYGF 416

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +   +    +DI  +    E Q    R            K+  +L  +  A  
Sbjct: 417 PIDLTTIMAEEKNYK-VDIKGYEGLCEAQSEIDRKRQKEK------KVELTLGAEANA-- 467

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                 L+ +     D     +       + + S++KAI    E V+ A  G  + VV +
Sbjct: 468 -----WLKNNDIKPTDDSFKYK------QHEIQSVIKAIWNGKEFVDTAPKGTLIGVVLE 516

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLV 572
            + FYAE GGQ+ D G    I D          K   G  +H   +  E   L+    + 
Sbjct: 517 NSNFYAEQGGQIYDIGQLSFIDDQKTAFDVKDCKVFGGYVLHIGYLSYECDSLKVGDRVE 576

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           LT+DY  R  +  NH++TH++++AL  ILG  + Q GS +     RFD +  + IT  EL
Sbjct: 577 LTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFRFDFSFGRAITKDEL 636

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVS 680
             I+  VND I + L V  + +    A   +G  A+ G  Y D VR           + +
Sbjct: 637 IKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQLIEN 696

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               +   +S   CGGTH+S+T +  L  I SE ++ AG+RRI A+TG  A S +    E
Sbjct: 697 PTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAVTGSEAASAIELNKE 756

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWE--------------------EYRKLQLIHAKRKLQ 780
                 + LK+S   +   +  + +                    E + LQ    K +  
Sbjct: 757 LEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQVKEQET 816

Query: 781 LNVEDLSCHKIADVNFMSHIISEV---------DSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  +    +       ++    +V         ++  +   +  +Q K     IML+   
Sbjct: 817 ILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAIMLISPD 876

Query: 832 KE-KKASVLIVVTED--LLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPN 881
           +E  K + + +V +D  +     A        +VL                 +AQ  G  
Sbjct: 877 EEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKV--------DVAQGVGSK 928

Query: 882 GNKADQAI 889
            +K D+AI
Sbjct: 929 LDKIDEAI 936


>gi|225560127|gb|EEH08409.1| alanyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 1029

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/962 (30%), Positives = 458/962 (47%), Gaps = 110/962 (11%)

Query: 7    IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
            +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P     T    
Sbjct: 106  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFAT---- 161

Query: 67   CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             +R              N   TFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+  RLY
Sbjct: 162  -LRRAH-----------NSQKTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLNPDRLY 209

Query: 127  ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            +T ++ +         EA +LW  + G++ D ++     DNFW M E GPCGPCSEI +D
Sbjct: 210  VTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCSEIHYD 268

Query: 179  QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            +           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+ ++LQ
Sbjct: 269  RIGGRNASH-LVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERLVSILQ 327

Query: 239  EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADG 289
             K++NYD D+F  L +   ++TG +                 +RV+ DH+R+ +F I+DG
Sbjct: 328  NKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTFAISDG 387

Query: 290  ILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAYPELIQAKLLI 347
              P NEGRGYV+RR++RR   YAR  L          ++P L  +MG  +PE+ + +  +
Sbjct: 388  ASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRRKQTDV 447

Query: 348  EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
             E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+ + + 
Sbjct: 448  MEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGKLHGADVWRLYDTFGFPVDLTRLMA 507

Query: 406  CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              RGL  ID   F +A    R +A+  S G G  T + +  ++ +               
Sbjct: 508  EERGLT-IDNAEFEEA----RLKAKEASKGQGKRTADVVKLTVHD--------------L 548

Query: 466  SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQTPFYA 522
                  D               ++S +KAI    + V+       G++  ++ D+T FYA
Sbjct: 549  GLLETMDDVPKTNDDAKFGRGNITSQIKAIYYNKKFVDSTKDIPQGEQFGIILDRTNFYA 608

Query: 523  EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E GGQ  DTG  I DG   L + DVQ    G  +H   ++ G      S++   D   R 
Sbjct: 609  EQGGQENDTGKIIIDGKAELAVEDVQ-VYGGYILHTGFMKYGSFNVNDSVIAEYDELRRW 667

Query: 582  QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   ++ ++L+ IE    D
Sbjct: 668  PIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEKIERISTD 727

Query: 642  IIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-----------DGGVH 689
             I QN  V  + +    A   SG  A+ G  Y D VRVVSV  E                
Sbjct: 728  YIRQNCAVYAKDVPLAIARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDPRWKDI 787

Query: 690  SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + L  F 
Sbjct: 788  SIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGERLRRFE 847

Query: 750  KV---SQGNVVGRV--------------------------EEIWEEYRKLQLIHAKRKLQ 780
            K+    Q  +  ++                          +++ E  +  Q + +K+ L 
Sbjct: 848  KMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLESKKALD 907

Query: 781  LNVE--DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKAS 837
                  +   +K+A  + +  +    + K L   ++ ++ K+Q   + +    KE  K  
Sbjct: 908  AITGYFEAPENKVAS-HLVMQLPISANPKALSDSLNFVKTKMQDKSVYMFAADKEAGKVV 966

Query: 838  VLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                V + L +      D A   + ++ GG  GG+  ++   G    K D+AI     +L
Sbjct: 967  HGCHVAQALSEQGATPNDWANTVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAATEYL 1025

Query: 897  KK 898
            +K
Sbjct: 1026 EK 1027


>gi|254252618|ref|ZP_04945936.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895227|gb|EAY69107.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 914

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/674 (44%), Positives = 410/674 (60%), Gaps = 42/674 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL+FF+  GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++  Y   
Sbjct: 21  MKAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYSRA 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT  + L 
Sbjct: 81  TTAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWELLTTVYLLP 140

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPCSE 174
           + +L++TVY ED+EA+ +W K  G++ ++IIRI  N              +TGPCGPC+E
Sbjct: 141 KDKLWVTVYQEDDEAYDIWAKEVGVATERIIRIGDNKGARYAVGQLLDDGDTGPCGPCTE 200

Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF+D G  + GG PGS  E+G+RYIEIWNLVFMQF +  +     LPK  +DTGMGLER+
Sbjct: 201 IFYDHGPDVWGGPPGSHEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ   +NY+IDLF++LI+A+ +VT +    NN  + +VI DH+R+ +FLI DG++P 
Sbjct: 261 AAVLQHVHSNYEIDLFQNLIKAAARVTEVADLNNN--SLKVIADHIRACAFLIVDGVIPG 318

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ +   LG        L+  L  EMG AYPEL +A+  + + LR 
Sbjct: 319 NEGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGDAYPELKEAEQRVTDVLRQ 378

Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           E+ERF +T++ G+ +L+  L+ L     ++L+G++AFKL+DT+G PLD+  D+   R + 
Sbjct: 379 EEERFFETIEHGMSILEAALAELDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERSVT 438

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D  +F+ A+  QR +ARA      +         L+     T F GY+ +        
Sbjct: 439 -VDEPAFDDAMARQREQARAAGKFKATQG-------LEYTGAKTTFHGYEEIAFDD---- 486

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V A+   G  V E  +GQ   VV D TPFYAE+GGQ+GD 
Sbjct: 487 ------------------AKVVALYVDGSSVNEVKTGQHAVVVLDHTPFYAESGGQVGDQ 528

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G       R  + D  K    +  HH  +E+G L+    L   ID Q R +   NHSATH
Sbjct: 529 GVLANAATRFAVADTLKVQADVIGHHGTLEQGTLKIGDVLRAEIDAQRRARTQRNHSATH 588

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+H AL  +LGSHV Q GS +  D  RFD  H+ P+T  E++ +E  VND I  N P + 
Sbjct: 589 LMHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIV 648

Query: 652 RIMNREDAIASGAA 665
           R+M  ++A+  GA 
Sbjct: 649 RVMPYDEAVKGGAM 662


>gi|6176440|gb|AAF05592.1|AF188717_1 alanyl-tRNA synthetase [Dictyostelium discoideum]
          Length = 946

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/968 (30%), Positives = 459/968 (47%), Gaps = 112/968 (11%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
            +V+ IR TF++FF++   H  +PSS++IP +DPTL+F N+GM  FK IF GQ  P    
Sbjct: 1   MDVNQIRKTFIDFFREKYEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQ 60

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT
Sbjct: 61  AKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + + LD+ RLY+T +        + D EA  LW +   L  ++++     +NFW M + G
Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQY--LPEERVLPFGMKENFWEMGDQG 178

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+ E    G    + +    IEIWNLVF+Q+ ++  +    LP+  +DTG
Sbjct: 179 PCGPCSEIHYDKVEG-RDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHVDTG 237

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT----------GMKYEGNNIVNHRVIVD 277
           MGLER+ +++Q+   NYD D+F  +  A ++VT          G +      + +RVI D
Sbjct: 238 MGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRVIAD 297

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +F IADG  P+ +GRG VLRRI+RRA+ Y +  L         L+  +    G  
Sbjct: 298 HIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPTGFFSKLVDVVIANFGEF 357

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           +PEL +    I+  L  E++ F KTL++G+V  + ++     +  L+ + A+ L   +G 
Sbjct: 358 FPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTCYGF 416

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +   +    +DI  +    E Q    R            K+  +L  +  A  
Sbjct: 417 PIDLTTIMAEEKNYK-VDIKGYEGLCEAQSEIDRKRQKEK------KVELTLGAEANA-- 467

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                 L+ +     D     +       + + S++KAI    E V+ A  G  + VV +
Sbjct: 468 -----WLKNNDIKPTDDSFKYK------QHEIQSVIKAIWNGKEFVDTAPKGTLIGVVLE 516

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLV 572
            + FYAE GGQ+ D G    I D          K   G  +H   +  E   L+    + 
Sbjct: 517 NSNFYAEQGGQIYDIGQLSFIDDQKTAFDVKDCKVFGGYVLHIGYLSYECDSLKVGDRVE 576

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           LT+DY  R  +  NH++TH++++AL  ILG  + Q GS +     RFD +  + IT  EL
Sbjct: 577 LTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFRFDFSFGRAITKDEL 636

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVS 680
             I+  VND I + L V  + +    A   +G  A+ G  Y D VR           + +
Sbjct: 637 IKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQLIEN 696

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               +   +S   CGGTH+S+T +  L  I SE ++ AG+RRI A+TG  A S +    E
Sbjct: 697 PTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAVTGSEAASAIELNKE 756

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWE--------------------EYRKLQLIHAKRKLQ 780
                 + LK+S   +   +  + +                    E + LQ    K +  
Sbjct: 757 LEVRFNNALKLSGSELAKEIVSLLDLLKVVTISASVRMNLVETLKEVQALQRKQVKEQET 816

Query: 781 LNVEDLSCHKIADVNFMSHIISEV---------DSKELKSVMDALQKKIQSGIIMLVGIS 831
           +  +    +       ++    +V         ++  +   +  +Q K     IML+   
Sbjct: 817 ILAQQAQTYLEKTSEELAKSQPKVFVDLVNFNSNTPLITETIKKIQTKSPMTAIMLISPD 876

Query: 832 KE-KKASVLIVVTED--LLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPN 881
           +E  K + + +V +D  +     A        +VL                 +AQ  G  
Sbjct: 877 EEKGKVTCIGIVPKDSEISKTLTANAWVVKVTEVLGGKGGGKV--------DVAQGVGSK 928

Query: 882 GNKADQAI 889
            +K D+AI
Sbjct: 929 LDKIDEAI 936


>gi|255072777|ref|XP_002500063.1| predicted protein [Micromonas sp. RCC299]
 gi|226515325|gb|ACO61321.1| predicted protein [Micromonas sp. RCC299]
          Length = 923

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/932 (35%), Positives = 481/932 (51%), Gaps = 84/932 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  FLEF+++ GH  LPSSSL+P  DPT++ T +GM+ FK +F GQ +      T
Sbjct: 28  SGSGIRRRFLEFYEQRGHARLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQAERAVPCAT 86

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QKCVR     ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L TKE+ LD+
Sbjct: 87  TTQKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQYAWELATKEYGLDE 142

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            R+Y++V+ ED+EA+ +W+ + G+  ++I R+   DNFW+   TGPCGPCSE+++D    
Sbjct: 143 TRIYVSVFREDDEAYAIWRDVVGVPEERIKRMDEADNFWAAGPTGPCGPCSELYWDFHPE 202

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G      E+  R+IE +NLVFM+  +    +   L   +IDTGMGLERMA +LQ K N
Sbjct: 203 -RGAEGADLEDDSRFIEFYNLVFMEMNRDASGKTAPLKNKNIDTGMGLERMAQILQGKPN 261

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGY 299
           NY+ DL + +I  +  + G+ Y+  +       +VI DH R+ ++L++DG+LP+N GRGY
Sbjct: 262 NYETDLIRPIIDKAASMAGISYDDADDATKLKLKVIGDHTRAVAYLVSDGVLPSNVGRGY 321

Query: 300 VLRRIMRRAMCYARLLGYTEP-----LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           ++RR++RR +   RLLG   P         +        G   PE+      I E    E
Sbjct: 322 IVRRLLRRVVRCGRLLGVKAPEGAQAFTPTIAEVAVGMSGDCDPEVANRAPKIYEEFERE 381

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
           + RF KTL RG  +L  +++     +     L+GD AF LYDT+G PLDI  D+    G+
Sbjct: 382 ELRFAKTLGRGEEILADMIAAAKAKDAEAPELSGDDAFTLYDTYGFPLDITTDVATEEGV 441

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A +D+  F  A+E  R+ +R   + +     + +     E    T+F GY  L       
Sbjct: 442 A-VDVEGFEAAMEIARTLSRDARVTVDVTAGDLLATIADELGEPTRFTGYGSLV------ 494

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                             S  V+AIV+ GE V+ A +G+ VEVV D TPFYAE GGQ+GD
Sbjct: 495 ----------------EQSVTVRAIVRAGERVDSAAAGETVEVVLDATPFYAEGGGQVGD 538

Query: 531 TGCA-IGDGIRLQITDVQKKAEG-IFVHHAIVE---RGILRTEMSLVLTIDYQNRRQLSI 585
            G   + +G+ L + D +K A G +FVH   V     G +    ++   +D ++RR+   
Sbjct: 539 EGEIQLANGVVLSVRDCRKAAGGRVFVHVCEVTGDASGSVSVGDAVTAAVDAESRRRAKA 598

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  ++G  VSQ GS +  + LRFD       T A+L+ IE  VN  I  
Sbjct: 599 NHTATHLLQSALKRVVGEDVSQAGSLVNTERLRFDFNAPAGPTPAQLEEIEALVNGWIGD 658

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              +V + M   +A + GA A+ G KY D VRVV          S  LCGGTHV++T EI
Sbjct: 659 ATNLVAQEMPIAEAKSRGATAMFGEKYGDVVRVVD-----VPGVSMELCGGTHVANTAEI 713

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               IVSE+ I AG+RRIEA++G      L  ++  ++ LA  L+V    + GRV  + +
Sbjct: 714 GGFKIVSEAGIAAGVRRIEAVSGPGVVELLNQREGVVRELAGALRVPPEEIAGRVTSLMD 773

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQKK 819
           + R  Q      + +L            +        +   +  VD   LKS  ++L  K
Sbjct: 774 DLRAAQKEAEALRGELAAAKSVALAADAIVASNGSRVLVARLDGVDPAALKSAAESLLAK 833

Query: 820 ------IQSGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLA---------RLSAKV 862
                      ++L   S + K  ++ +  E++       A  +              K 
Sbjct: 834 LAGEAGGAGAAVVLGSGSADGKVGLVAIFDEEVQSAGGLKAGAVLGAAAKACGGGGGGKP 893

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                        Q+GG +  + D A+ G   
Sbjct: 894 GFA----------QAGGRDATQLDAALDGARD 915


>gi|312215385|emb|CBX95337.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 968

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/986 (31%), Positives = 470/986 (47%), Gaps = 129/986 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K IF G   P       +  
Sbjct: 15  VRQTFLDYFKERGHSFVPSSSVVPLSDPTLLFTNAGMNQYKAIFQGTIDPSSDFAQLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLTK + +D
Sbjct: 75  TNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTKVYGID 134

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            +RLY+T ++ +E+      A +LWK + G+  D I+     DNFW M + GPCGPCSE+
Sbjct: 135 TKRLYVTYFEGNEDLEPDLKAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGPCSEV 193

Query: 176 FFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            +D  E   G         + +    IEIWN VFMQ+ ++  +    LP   IDTG+G E
Sbjct: 194 HYDLREPEGGNYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGLGYE 253

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRSS 282
           R+ +VLQ   +NYD D+F  L +  ++VTG +                 +RV+ DH R  
Sbjct: 254 RLVSVLQHTKSNYDTDVFTPLFKRIQEVTGAREYRGGFGADDPDGIDTAYRVVADHTRMM 313

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPEL 340
           SF IADG +P N GRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+
Sbjct: 314 SFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFEVEIGDFFSKIIPTLVDQMGDMFPEI 373

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398
            + +  I E L  E++ F K+LDRG V+ +     +       L GD  ++LYDT+G P+
Sbjct: 374 RKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKAKGSNDLPGDDVWRLYDTYGFPV 433

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + +   RGL   D     + +E+ + +AR  S G        + F + +        
Sbjct: 434 DLTKLMAEERGLNIND-----KEVEKAQEKAREASKGDKKAGAAVVKFDVHDLGA----- 483

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEVVF 515
                        D        P      +++ +KAI    + ++   E   G++  V+ 
Sbjct: 484 ---------LDAMDDVPKTDDSPKYGRENITATIKAIYHNKQFLKSTKEVPEGEQFGVLL 534

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG  + DG   + I +VQ    G  +H   ++ G L+    ++  
Sbjct: 535 DKTNFYAEQGGQEYDTGRLLVDGEAEISIENVQ-VYAGYVLHTGYLKYGELKVGSEVIAE 593

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +H   ++ AE++ 
Sbjct: 594 FDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAEIEK 653

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVE----------- 682
           +E      I  +  V  + +    A    G  A+ G  Y D VRVVSV            
Sbjct: 654 VESISTTYIKADAKVYAKDVPLSKAKEITGVRAVFGETYPDPVRVVSVGQPVEDLLADPK 713

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------ 736
               G  S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ A +         
Sbjct: 714 NPAWGKLSVEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYNVQRLANDFA 773

Query: 737 -------------GQDEKLKSL---------ASFLKVSQGNVVGRVEE-IWEEYRKLQLI 773
                         ++ + K L         ++  K S  +   ++++ I +E +     
Sbjct: 774 TRLESFGKMPFGPAKEAEAKKLQVELNGLTISALSKSSLRDSFNKIQKSILDEQKAAAKA 833

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ-------KKIQSGIIM 826
             KR L   V      +  D N + H ++    +  K++ + ++             + +
Sbjct: 834 DNKRVLD-QVTKFFEEEGKDSNVLVHKVA-WSPQVNKAISETIKTVSAPKSGLKDKSVYL 891

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-------------- 872
                +E K      V+E    +    D  + +A V         P              
Sbjct: 892 FSASPEEGKVVHACYVSEPF--KAAGADGPKWAAAVT--------PIIGGKAGGKAGAAT 941

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
            + Q  G N  + D+ +     +++K
Sbjct: 942 AIGQ--GTNPERVDEGVEEARKWIEK 965


>gi|58268868|ref|XP_571590.1| alanine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134113024|ref|XP_774788.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257434|gb|EAL20141.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57227825|gb|AAW44283.1| alanine-tRNA ligase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1012

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/970 (30%), Positives = 452/970 (46%), Gaps = 99/970 (10%)

Query: 4    VSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
             + +R TF+++F       H   PSS ++P +D TL+F N+GM  +K +F G   P  + 
Sbjct: 62   AAKVRQTFIDYFVNQPGFEHTFWPSSGVVPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121

Query: 60   ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  A+ +AWDLLT
Sbjct: 122  SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVGALTMAWDLLT 181

Query: 116  KEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            + + L + RLY+T ++ D         EA ++W+ + G+    I+     DNFW M  TG
Sbjct: 182  RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI FD+           + +    +EIWN VF+Q+ ++   E   LP   +DTG
Sbjct: 241  PCGPCSEIHFDRIGG-RDAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHVDTG 299

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
            MG ER+ +VL   ++NYD D+F  +    +++TG +                 +RVI DH
Sbjct: 300  MGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVIADH 359

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYT-EPLMMHLLPALCTEMGSA 336
            +R+ +  I+DG +P  +GRGYVLRR++RR + YA    G         L+P +   +G  
Sbjct: 360  IRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESLGPI 419

Query: 337  YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTH 394
            +PE+ +    + E L  E+  F +TL+RG  L +   +     K  +L+G   ++LYDT+
Sbjct: 420  FPEVTKKIPELTEILNEEEASFARTLNRGEALFNKYATTAIDEKRTVLSGKDIWRLYDTY 479

Query: 395  GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
            G P+D+ Q +   RGL  ID  +F +A  E    ++A          +     L      
Sbjct: 480  GFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGGKEKAGALVKLDVHDLA----- 533

Query: 455  TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511
                             D             + + + VK+I    + +    E       
Sbjct: 534  ------------ALEANDAVPKTDDSFKYHLDDIKANVKSIYHGSKFLNSTSELPPNTTF 581

Query: 512  EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             ++ D+T FYAE+GGQ  DTG    DG    ++ DVQ    G  +H   +E G +     
Sbjct: 582  GILLDRTNFYAESGGQEYDTGVIAIDGKAEFKVEDVQ-VYNGYVLHIGRMEEGDIEIGDE 640

Query: 571  LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ++ T D   R  +  NH+ TH+L+ AL  +LG H+ Q GS + P  LRFD +H K I   
Sbjct: 641  VICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSIAVP 700

Query: 631  ELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGV- 688
            EL  IE   ND I + +PV  + M   +A    G  A+ G  Y D VRVVS+ Y    + 
Sbjct: 701  ELIKIEGICNDWIKRGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVSLGYPLEDIA 760

Query: 689  ----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS----- 733
                       S   CGGTHV+ T +I    I+ ESSI  GIRRI A+TG  A       
Sbjct: 761  KNVEDSKWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDAHDVSRKG 820

Query: 734  -HLMGQDEKLKSLASF------------LKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
                 + +++K L               L  S  +++ +   + E++ K+Q         
Sbjct: 821  VEFERKLQRIKELQGKEKEVAMKPFLVELGQSGISLIKK-NSLKEQFEKIQGELVAAAKA 879

Query: 777  -----RKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGI 830
                  K+          +  + N  +       +SK L + + A +   +  +      
Sbjct: 880  KVAADSKIISEAIKTYFQENPNENVFAGSFDVGGNSKTLTAAVAAGKSASK-AVYAFSAD 938

Query: 831  SKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             +  K + +  + + +L     +A       AKV+ GG GGGR   A   G   +K D+A
Sbjct: 939  PETGKVAHVNYLPKPILESKALDAKIWLNEVAKVI-GGKGGGRDDSAAGVGSEISKIDEA 997

Query: 889  IAGVASFLKK 898
            I    S  KK
Sbjct: 998  IVVAKSVYKK 1007


>gi|320164762|gb|EFW41661.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 954

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/961 (31%), Positives = 457/961 (47%), Gaps = 83/961 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
            S++R  F++FF   GHE +PSSS+IP +DPTL+F N+GM  FK  F G   P      Y
Sbjct: 10  ASAVRQQFVDFFVSKGHEFVPSSSVIPHDDPTLLFANAGMNQFKPAFLGTADPNSRMAKY 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK+ AI  AW+LLT  +
Sbjct: 70  RRTANSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKKEAISWAWELLTVVY 129

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T +  +E        EA  +W  + GL A++++     +NFW M ETGPCG
Sbjct: 130 KLDPNRLYVTYFGGNEKAGLEADLEARDIWLSV-GLPAERVLPYGMKENFWEMGETGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           + +    +EIWNLVF+QF ++  Q    LP+  +DTGMGL
Sbjct: 189 PCSEIHFDRIGGGRDAAALVNADDPDVLEIWNLVFIQFNREVDQSLRKLPRCHVDTGMGL 248

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ +VLQ K +NYD D+F     A +  TG++               + +RV+ DH+R+
Sbjct: 249 ERIVSVLQNKRSNYDTDVFVPYFTAIQAATGIRAYTGKVGADDTDGLDMAYRVVADHIRT 308

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P   GR YVLRR++RRA+ Y A  LG        L+  + T +G  +PEL
Sbjct: 309 LTIALADGGAPGPTGRDYVLRRVLRRAVRYCAEKLGAKPGFFASLVDVVGTSLGGFFPEL 368

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
           +++   I++ +  E+ +F KTLDRG  L +   +   K+ ++ G VA++LYDT+G PLD+
Sbjct: 369 VRSPQDIKDIINEEEAQFRKTLDRGKRLFERAAA-ASKNGVIEGLVAWRLYDTYGFPLDL 427

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +     L  ID   F  A  +    A+  S G      E +   +   +  +     
Sbjct: 428 TELMAAELKLT-IDKPGFKIAEAD----AKEASKGKVDEAEETVVLDV---HNISALKDK 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE----EAVSGQKVEVVFD 516
            +       K + +    K   +        + AI    E+V     E++ G KV +V D
Sbjct: 480 GVPATDDSPKFNYRSENDKYTFE---SAVGSIVAIALGKELVSTVDFESLKGAKVGIVLD 536

Query: 517 QTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +T FYAE GGQ+ DTG A     +     I  V K      +H   ++ G L     L L
Sbjct: 537 KTNFYAEQGGQIFDTGFATRVDNEASEFAIESV-KVYGPYVLHVGRLQGGSLSIGDKLTL 595

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +ID   R  +  NH+ TH+L+ AL  +LG+ V Q GS + PD  RFD +H K +++ EL+
Sbjct: 596 SIDDIRRLPIMANHTTTHMLNFALREVLGNSVDQKGSLVRPDNFRFDFSHPKAVSTEELR 655

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV-----------SV 681
            IE  VNDII +N  V         A   +G  A+    Y D VRVV             
Sbjct: 656 KIEKIVNDIIEKNETVYRVPTALHLAKEVAGLRAVFDEVYPDPVRVVSVGVPVEKLLADP 715

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                  +S   CGGTH+  T +     I  E  I  GIRRI  ITG+ A       D+ 
Sbjct: 716 ASASWKGYSIEFCGGTHIDRTRDARRFAIFREEGIAKGIRRISGITGKEAIEAYKTADKL 775

Query: 742 LKSLASFLKVSQG----NVVGRVEEI---------WEEYRKL---------QLIHAKRKL 779
              +    ++  G     +   +E +          +E +               A++  
Sbjct: 776 EAKVKQVSEIPIGQLGRELPSLIESVDTAVIPSFRKDEIKAAIAAISKRVSDHEKAQQAE 835

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
           Q  +   +  +  D      +++ VD    +  M A     +    +LV    +     +
Sbjct: 836 QTKIATAAVKERIDA-GAPFVVAFVDINGNRKAMSAGLSAAKDAAGLLVSKDGDS-IIAV 893

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP---NGNKADQAIAGVASFL 896
             V + L+ +  A +    + K L     GG   + Q+ G    +    D A    A+ L
Sbjct: 894 ASVPKALVGKIKAGEWVTEAVKSLSNTKTGGADTVGQASGTGSDHAAVIDAATKFAAARL 953

Query: 897 K 897
           +
Sbjct: 954 Q 954


>gi|88608446|ref|YP_506054.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|123492337|sp|Q2GEP2|SYA_NEOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88600615|gb|ABD46083.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 848

 Score =  729 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/858 (40%), Positives = 501/858 (58%), Gaps = 62/858 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  F++FF KNGH  LPS+SL+P +DP+LMF N+GMVPFK  F    +  + ++ T QK
Sbjct: 5   LRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVTAQK 64

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW  +T+E  L +++LY
Sbjct: 65  CVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKKKLY 124

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           ITVY ED+EAF++W K++G    KI RI+T+DNFW M + GPCGPCSEIF+D GE + G 
Sbjct: 125 ITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHLSGD 184

Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
           +P   ++ GERY+EIWNLVFMQ+ ++   E   +    IDTGMGLER+A +L+   +NY 
Sbjct: 185 IPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTDDNYK 244

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
             LF+ +++ S+ VTG K   +N   H+VI DHLRS+SFLIADG+LP N GR YVLRRI+
Sbjct: 245 TKLFEAIVKESQNVTGNK---DNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRII 301

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRA+ Y+  LG+   L+  L   L   MGS Y EL +A+ LI +TL  E++ F  TL  G
Sbjct: 302 RRAVRYSHALGFDTVLLPKLFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKSG 361

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           + LL+ V S + + + L+GD+AF LYDTHG PLDI  DIL  R ++ +D   F + ++ Q
Sbjct: 362 MKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDILKERKIS-VDEEGFAERMKMQ 420

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           R  A+A  +   + T+     ++  ++G T FIGY+   G                    
Sbjct: 421 RLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGL------------------- 461

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               +++ AI        E     K+ ++ DQT FY E+GGQ  D G   G+   L++  
Sbjct: 462 ----ALILAIT-------EKEGSNKLTIILDQTIFYPESGGQESDQGIIEGENTLLKVEK 510

Query: 546 VQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           V K  EG+ +H   + RG +      + L ID   R  L+ NHSATH+LHH L   LG+H
Sbjct: 511 VYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILHHVLRKRLGAH 570

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           VSQ GS + P  LRFD +HS+ IT  EL  IED +N +I  + PV+T I   ++AI  GA
Sbjct: 571 VSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEAIRDGA 630

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             L G KY+D VRVVS+        +  LCGGTHV  +  I L+ I+S SS+  G+RRIE
Sbjct: 631 IGLFGEKYDDTVRVVSIG------EAVELCGGTHVKKSSAIGLVKILSASSVAHGVRRIE 684

Query: 725 AITGQRARSHLMGQDE----KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           A+T   A  ++   ++    +L    + LK  Q +    +  +++               
Sbjct: 685 AVTHLTALQYIREAEQAQLYQLTEHQAKLKAMQKSHQKEITRVYQSI------------- 731

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
           +   +    +   V  ++  +  +  + L S+   ++ K     +++V     +    LI
Sbjct: 732 VTNAEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTG---VLIVHTELSEALYSLI 788

Query: 841 VVTEDLLDRFNAVDLARL 858
           ++ +++    + +D  + 
Sbjct: 789 ILDKEIFKNISFIDSMKE 806


>gi|119484060|ref|XP_001261933.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119410089|gb|EAW20036.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 961

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/982 (31%), Positives = 487/982 (49%), Gaps = 117/982 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
           +     +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P    
Sbjct: 10  LWTAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDF 69

Query: 57  -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLT
Sbjct: 70  AKLKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLT 129

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           K + LD +RLY+T ++  E        EA  LW+  +G+  D I+     DNFW M + G
Sbjct: 130 KVYGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQG 188

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTG
Sbjct: 189 PCGPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTG 247

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDH 278
           MG ER+ +VLQ+K++NYD D+F  L  A + +TG +                 +RV+ DH
Sbjct: 248 MGFERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGMFGADDSDGIDTAYRVVADH 307

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R+ +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  
Sbjct: 308 VRTLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDM 367

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
           +PEL + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT 
Sbjct: 368 FPELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTF 427

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL  ID + F +A    R RA+  S G     T  +   + +    
Sbjct: 428 GFPVDLTRLMAEERGL-NIDDLEFEEA----RLRAKEASKGQKKSATGTVKLDVHD---- 478

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKV 511
                       K  K +               +++ +KAI           +   G+++
Sbjct: 479 ----------LGKLEKMNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQI 528

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            ++ D+T FYAE GGQ  DTG  I DG   L++ DVQ    G  +H   ++ G      +
Sbjct: 529 GIILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQ-LYAGYVLHTGFMKYGSFSIGDA 587

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  
Sbjct: 588 VLCEYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEK 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR-----------VRV 678
           EL+ IE+   + I QN  V ++ +    A   SG  A+ G  Y D              +
Sbjct: 648 ELEKIEEISTEYIRQNCDVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVEVEEIL 707

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-- 736
            +VE       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A       
Sbjct: 708 KNVEDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVA 767

Query: 737 -----------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLI 773
                             ++++ K +   L       V +     R   I ++    Q  
Sbjct: 768 KEFEKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKA 827

Query: 774 HAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGII-ML 827
             K + +  +E +  +  +  N      ++ +    ++K +   ++ ++ K+Q   + +L
Sbjct: 828 QQKLETKKALEAIISYFESPTNEGKTCLVTRLPISANAKAVSESLNYVKSKLQDKTVYVL 887

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGG----------GGGGGRPHMAQ 876
            G S++ + +    V++ LLD   +A DLA + + V+GG          G G        
Sbjct: 888 AGDSEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGNG-------- 939

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
               + +K + AIA  + +L K
Sbjct: 940 ---VHPDKIEDAIALASDYLAK 958


>gi|322712022|gb|EFZ03595.1| alanyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 952

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/961 (32%), Positives = 477/961 (49%), Gaps = 90/961 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R  F ++ Q+ GH ++PS S++P +DPTL+FTN+GM  FK IF G           +  
Sbjct: 11  VRKAFFDYMQQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD
Sbjct: 71  ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130

Query: 122 QRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            +RLY T ++         D+EA +LW  I G+  D+I+     DNFW M + GPCGP S
Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLDI-GMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWNLVFMQF++Q       LP   IDTGMG ERM
Sbjct: 190 EIHYDKIGGRNAAH-IVNQDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGFERM 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            + LQE  +NY  D F  L +  ++VTG++   +             +RVI DH+R+ SF
Sbjct: 249 VSALQETDSNYATDCFTPLFKQIQEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRTLSF 308

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG +P ++GRGYV+RRI+RR + YAR     E       +LPAL + MG  +PEL++
Sbjct: 309 AITDGAVPNSDGRGYVIRRILRRGVRYARKYLNAEIGSFFSKILPALVSHMGDQFPELVK 368

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDI 400
            +L I+E L  E+E F +TLDRG    +   +   K  +  L+GDV ++LYDT G P+D+
Sbjct: 369 KQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKAGVKKLDGDVVWRLYDTFGFPVDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +   RGL  ID       +   + +AR  S  + +         + +     Q    
Sbjct: 429 TQIMAEERGLE-ID----ESEVSVAKEKAREASKAVKASVDTFAKLDVHQIAQLDQQKVA 483

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                +KF+K D K   Q      T   S+             E      + ++ D+T F
Sbjct: 484 RTDDDAKFVKGDSKGKVQLIFDGKTFHNSTK------------ELPEKTAIGILLDKTNF 531

Query: 521 YAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           YAE+GGQ+ DTG  + D  +  ++ DVQ    G  +H   +E G L +   ++   D   
Sbjct: 532 YAESGGQVADTGRIVIDDVVEFKVMDVQ-NYGGFILHSGYIEYGALSSGDEVICEYDELR 590

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R  +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +   EL+ IE   
Sbjct: 591 RSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELRKIETLS 650

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687
           N+ I +N  + ++ ++ + A    G  A+ G  Y + VRVVS+             ++  
Sbjct: 651 NEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDPKKQEWR 710

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---------- 737
            +S   CGGTHV  TG I  L +V ES I  GIRRI A TG+ A                
Sbjct: 711 QYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGEAAHQVQREAAEFSKKLDI 770

Query: 738 ---------QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
                    +D + K ++  L       +++  +  R ++I       Q    K +    
Sbjct: 771 LEAMPFGPAKDAQTKVVSQELSQLVISTLTKDELNTRFQKIATSVIAEQKKRQKAEAGAA 830

Query: 783 VE--DLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV- 838
           V        +  DV+ F+  +    ++K L  V    Q K ++  + + G S+E+ A V 
Sbjct: 831 VGCVIKHFEEKEDVDYFVGRLPISANAKALTEVFKHFQAKDKTKSVYIFGGSQEEGAVVH 890

Query: 839 -LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + V +        A   A + + V+GG  GG  P   Q  G      D A+     +L+
Sbjct: 891 GVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEPTR-QGQGTKPENIDDAVEVARKWLE 949

Query: 898 K 898
           +
Sbjct: 950 E 950


>gi|313837754|gb|EFS75468.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927365|gb|EFS91196.1| alanyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314972691|gb|EFT16788.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
 gi|328907450|gb|EGG27216.1| alanine--tRNA ligase [Propionibacterium sp. P08]
          Length = 892

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/926 (33%), Positives = 474/926 (51%), Gaps = 68/926 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF   GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFAGKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKSEAIQYAWELVTKPADQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+    I   +  DN+W M   G
Sbjct: 116 GLGFDPSSIWVTVLGPGFHPDYPEGDIEAREAWRA-AGVPDGHIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I  + +++G +Y  N  + +  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIAKASEMSGKRYGANHDDDIRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397
           ++     +     +E+E F +TL  G  +LD  +  + +   + L+G+ AF+L+DT+G P
Sbjct: 354 VLTEWDRVISAATAEEETFRRTLSAGTAMLDAAVIDTKVSGSKTLSGEKAFQLHDTYGFP 413

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+  ++   +GL  +D   F   + EQR+RA+A S       T+   ++     G T F
Sbjct: 414 IDLTLEMAAEQGLE-VDRDKFTALMAEQRARAKADSKTKKGLLTDPEAYAQIRALGETPF 472

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +GY  L                        V++ V  I+  G  V  A  G  VEVV  +
Sbjct: 473 LGYTDL-----------------------TVNTTVTGIIANGTSVTAAGPGSVVEVVLAE 509

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D+G    +G  L++ DVQ+   G+ VH   ++ G L     +   ++ 
Sbjct: 510 TPFYAEMGGQDSDSGIIRANGFDLEVLDVQRPVPGLIVHKVHLD-GDLAVGDQVTAVVNP 568

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R      H+ATH++H AL  I+G   +Q GS   P  LRFD + +K ++ +    IE+
Sbjct: 569 TTRFGACQAHTATHVIHAALREIVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEE 628

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N  I  +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGT
Sbjct: 629 RCNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGT 684

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV+STG I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    + 
Sbjct: 685 HVASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERTLVNELTGILKVQPDQLA 744

Query: 758 GRVEEIWEEYRKLQLIHAK---RKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSV 812
            RV ++  + +  +   A    R+L   V+D+          +F++  +  V   +L+++
Sbjct: 745 DRVSKLVTDLKDAERKLAAARTRELMSQVDDIVAGATSAGSFDFIAAKVPGVVGNDLRTL 804

Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              ++ +++    ++ L+G + +K A ++            A  L +     +GG GG G
Sbjct: 805 ASEVRGRVKDRPAVVTLIGGTDDKPAMIVAATESARAAGAKAGALIKAGIARIGGRGG-G 863

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           R  MAQ  G +    D A+  V + L
Sbjct: 864 RDDMAQGAGSDSAGIDAALRAVDTEL 889


>gi|326773292|ref|ZP_08232575.1| alanine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636522|gb|EGE37425.1| alanine--tRNA ligase [Actinomyces viscosus C505]
          Length = 903

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/936 (33%), Positives = 490/936 (52%), Gaps = 74/936 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANEHEIRPSVSLVSP-EPSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYSLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKAYGRGSAGPEAGEAYHDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M S+YPE
Sbjct: 296 RSALMLICDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDT 393
           L      I E    E++ F +TL  G  +LD  ++   K+       +++G  AF+L+DT
Sbjct: 356 LETGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGRSGRPLVSGKSAFELHDT 415

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451
           +G P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  +   F   EK  
Sbjct: 416 YGFPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G + F+GY                         +   + V  I+  G       +  +V
Sbjct: 475 GGGSTFLGY-----------------------TESSADATVTGILVDGVPQSVVTAPAEV 511

Query: 512 EVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           EVV D+TPF+AE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +     
Sbjct: 512 EVVLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEK 571

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   + S 
Sbjct: 572 AFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASD 631

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++  IE+ VN+ ++++L V   +M+ + A A+GA AL G KY  +VRVVS+    GG  S
Sbjct: 632 QISGIEERVNNRLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKQVRVVSI----GGDWS 687

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A  +   +   +  L++ + 
Sbjct: 688 KELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQAKEHALVSQLSTMVG 747

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----- 805
               ++  RVE +    +  +   A  +        +      V      ++  D     
Sbjct: 748 GRPEDLPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVRLGEVRLASADLGTVG 807

Query: 806 -SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAK 861
            +  ++S++   + ++      +V +     +  ++VV  +   R     A  L R +A+
Sbjct: 808 SADAVRSLVLDTRSRLGDAEPAVVAVGAVVGSRPVVVVATNAGARDQGIRAGALVRTAAQ 867

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           VLGGGGG G+  +AQ GG N    D+A+  VA  ++
Sbjct: 868 VLGGGGG-GKDDLAQGGGQNPQALDEALRAVAEQIQ 902


>gi|159123802|gb|EDP48921.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 1011

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/982 (31%), Positives = 482/982 (49%), Gaps = 117/982 (11%)

Query: 1    MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
                  +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P    
Sbjct: 60   FWTAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDF 119

Query: 57   -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
               ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLT
Sbjct: 120  AKLKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLT 179

Query: 116  KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            K + LD +RLY+T ++  E        EA  LW+  +G+  D I+     DNFW M + G
Sbjct: 180  KVYGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQG 238

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTG
Sbjct: 239  PCGPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTG 297

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDH 278
            MG ER+ +VLQ+K++NYD D+F  L  A + +TG +                 +RV+ DH
Sbjct: 298  MGFERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADH 357

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
            +R+ +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  
Sbjct: 358  VRTLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDM 417

Query: 337  YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
            +PEL + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT 
Sbjct: 418  FPELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTF 477

Query: 395  GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
            G P+D+ + +   RGL  ID + F +A    R RA+  S G     T  +   + +    
Sbjct: 478  GFPVDLTRLMAEERGL-NIDDLEFEEA----RLRAKEASKGQKKSATGTVKLDVHD---- 528

Query: 455  TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKV 511
                        K  K +               +++ +KAI           +   G+++
Sbjct: 529  ----------LGKLEKMNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQI 578

Query: 512  EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             ++ D+T FYAE GGQ  DTG  I DG   L++ DVQ    G  +H   ++ G      +
Sbjct: 579  GIILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQ-LYAGYVLHTGFMKYGSFSIGDA 637

Query: 571  LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  
Sbjct: 638  VLCEYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEK 697

Query: 631  ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR-----------VRV 678
            EL+ IE+   + I QN  V ++ +    A   SG  A+ G  Y D              +
Sbjct: 698  ELEKIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEIL 757

Query: 679  VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-- 736
             +VE       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A       
Sbjct: 758  KNVEDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVA 817

Query: 737  -----------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLI 773
                              ++++ K +   L       V +     R   I ++    Q  
Sbjct: 818  KEFEKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKA 877

Query: 774  HAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
              K + +  +E +  +  +  N      ++ +    + K +   ++ ++ K+Q   + ++
Sbjct: 878  QQKLETKKALEAIISYFESPTNEGKTCLVTRLPISANPKAVSESLNYVKSKLQDKTVYVL 937

Query: 829  GISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGG----------GGGGGRPHMAQ 876
                E  + +    V++ LLD   +A DLA + + V+GG          G G        
Sbjct: 938  AADLEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGNG-------- 989

Query: 877  SGGPNGNKADQAIAGVASFLKK 898
                + +K + AIA  + +L K
Sbjct: 990  ---VHPDKTEDAIALASDYLAK 1008


>gi|323303022|gb|EGA56826.1| Ala1p [Saccharomyces cerevisiae FostersB]
          Length = 810

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/803 (34%), Positives = 415/803 (51%), Gaps = 64/803 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A       ++  
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 743 KSLASFLKVSQGNVVGRVEEIWE 765
             L +  K+    +  +  ++ E
Sbjct: 768 ADLDAADKLPFSPIKEK--KLKE 788


>gi|301165787|emb|CBW25359.1| alanyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 878

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/918 (34%), Positives = 474/918 (51%), Gaps = 62/918 (6%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  ++   IR  FL++F+K+ H  + ++S++P NDPTL+F NSGM P K  F G+E+P  
Sbjct: 1   MKKLNSREIREKFLDYFEKHNHLKIKAASVVPQNDPTLLFINSGMAPLKPYFLGKEEPPN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + +   Q C+R      D+D+VG    H T FEM+G++S G Y+KE A  LA+ LL  E 
Sbjct: 61  KRLCNFQPCIRTK----DIDDVG-DRHHLTIFEMMGSWSIGDYYKELACSLAYGLLVDEL 115

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPC 169
             D +RLY TVY  +E        E+ + WKK  G+  D I+ +  +DNFW    ETGPC
Sbjct: 116 GFDPKRLYFTVYGGNEALGIKPDHESVEAWKK-CGVPEDHIVMLG-DDNFWGPAGETGPC 173

Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEG-ERYIEIWNL-VFMQFEQQNKQERFILPKMSIDT 226
           GPC+E+FFD G    P   PG   +   RYIEIWN  VFM+  ++       LP  S+DT
Sbjct: 174 GPCTEVFFDCGPEYGPEYKPGKHFDDVSRYIEIWNAGVFMELNKKKDGSFTPLPLKSVDT 233

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           G GLER+A V+    + Y+ DL + L+  S ++             R++ DH+R++ F++
Sbjct: 234 GSGLERLAMVMNGHDSVYETDLMQPLMDISHKLLKSDGSEAFTKKARMLTDHIRAAVFIL 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ++G+ P+NEG+GY+ RR++R+ +        ++     ++  +   M   YP++  AK +
Sbjct: 294 SEGVTPSNEGQGYIPRRLIRKCVAALMAKKASKIDFSEMVDLIVEMMSDYYPQIKSAKEM 353

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDIL 405
           I   L +E   F   +  GL L++  L+     ++   G VAF L  THGLPLD+++  L
Sbjct: 354 ITYNLNNEINDFIPIVKTGLELIEKELAENKSSNKSFPGKVAFDLVTTHGLPLDVLKSDL 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             R +  +D   +++  EE R  +R  S    SG  EK+   L  K   T F+GY+    
Sbjct: 414 SDREIE-LDQAEYDKCYEEHRKASRVISRKGASGDQEKV-EELVAKLSTTDFVGYETEET 471

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +S V  +++  E V+    G+       +TPFY E+G
Sbjct: 472 -----------------------TSKVNLLIKDSEKVDSVKEGESFLFTTVKTPFYGESG 508

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ+GD G A  D  +++I D  K    I VH A V  G ++    + L +D + R  +  
Sbjct: 509 GQIGDCGWATTDSAKVEIVDTMK-VGKIHVHVANVISGEVKDGSEIQLKVDSEVRSDIKR 567

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL  ++G H  Q GS +  D LRFD  +   +T  EL  IE   N  I +
Sbjct: 568 NHSATHLLHAALHKVVGKHAVQKGSLVRSDRLRFDFQNQSAVTKEELDKIEALTNQWIME 627

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N    T +++ + AI  GA AL G KY+ +VRV+S      G +S  LCGGTHVS TG+I
Sbjct: 628 NSGSETDLLDYDAAIEKGAIALFGEKYDSKVRVISF-----GENSVELCGGTHVSRTGDI 682

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L+ I SESS+  GIRRIEA+TG+ A   L  ++  L+  +  L V       +++E+ +
Sbjct: 683 GLMLITSESSVAKGIRRIEAVTGREAYKLLQERNNILRKTSELLSVKPSEFESKIQELKK 742

Query: 766 EYRKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +    +    K        E+ +  +++        +++ ++  LK + D L  K +  I
Sbjct: 743 KSSAKKAAPKKVSATDTKFENENKIEVSGQKIFVAQLND-NADVLKDLGDQLLAKGEYKI 801

Query: 825 IMLVGISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I L G   + K       V +DL  +  A DL +   K + GG GGG+PH AQ G P+  
Sbjct: 802 ICLAG--NDGKTIRAFSWVGDDLNKKVKAGDLLKELLKPV-GGRGGGKPHFAQGGSPDVA 858

Query: 884 ---KADQAIAGVASFLKK 898
              K    I+ V SFLK+
Sbjct: 859 SMGKIFSNISNVESFLKE 876


>gi|70983336|ref|XP_747195.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66844821|gb|EAL85157.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
          Length = 1011

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/982 (31%), Positives = 482/982 (49%), Gaps = 117/982 (11%)

Query: 1    MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56
                  +R TFL++F++NGH  +PSS ++P +DPTL+FTN+GM  FK+IF G   P    
Sbjct: 60   FWTAKRVRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDF 119

Query: 57   -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
               ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLT
Sbjct: 120  AKLKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLT 179

Query: 116  KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            K + LD +RLY+T ++  E        EA  LW+  +G+  D I+     DNFW M + G
Sbjct: 180  KVYGLDPQRLYVTYFEGHEEGGLEPDLEAKALWRA-AGVPEDHILPGNMKDNFWEMGDQG 238

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN VF+Q+ +++ +    LP   +DTG
Sbjct: 239  PCGPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTG 297

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDH 278
            MG ER+ +VLQ+K++NYD D+F  L  A + +TG +                 +RV+ DH
Sbjct: 298  MGFERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADH 357

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
            +R+ +F I+DG+ P ++GRGYV+RR++RR   YAR     E       ++P L  ++G  
Sbjct: 358  VRTLTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDM 417

Query: 337  YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
            +PEL + +  + E L  E+  F KTLDRG    +     + +  D+ L+G   ++LYDT 
Sbjct: 418  FPELKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTF 477

Query: 395  GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
            G P+D+ + +   RGL  ID + F +A    R RA+  S G     T  +   + +    
Sbjct: 478  GFPVDLTRLMAEERGL-NIDDLEFEEA----RLRAKEASKGQKKSATGTVKLDVHD---- 528

Query: 455  TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKV 511
                        K  K +               +++ +KAI           +   G+++
Sbjct: 529  ----------LGKLEKMNVVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQI 578

Query: 512  EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             ++ D+T FYAE GGQ  DTG  I DG   L++ DVQ    G  +H   ++ G      +
Sbjct: 579  GIILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQ-LYAGYVLHTGFMKYGSFSIGDA 637

Query: 571  LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ++   D   R  +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   +T  
Sbjct: 638  VLCEYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEK 697

Query: 631  ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR-----------VRV 678
            EL+ IE+   + I QN  V ++ +    A   SG  A+ G  Y D              +
Sbjct: 698  ELEKIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEIL 757

Query: 679  VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-- 736
             +VE       S   CGGTHV  TG+I  L I+ E+ I  GIRRI A+TG+ A       
Sbjct: 758  KNVEDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDAHEVQRVA 817

Query: 737  -----------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLI 773
                              ++++ K +   L       V +     R   I ++    Q  
Sbjct: 818  KEFEKRLDRLDAMALGPQKEQEAKQIQVELNQLSISAVQKSRFRERFASINKQVIDGQKA 877

Query: 774  HAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
              K + +  +E +  +  +  N      ++ +    + K +   ++ ++ K+Q   + ++
Sbjct: 878  QQKLETKKALEAIISYFESPTNEGKTCLVTRLPISANPKAVSESLNYVKSKLQDKTVYVL 937

Query: 829  GISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGG----------GGGGGRPHMAQ 876
                E  + +    V++ LLD   +A DLA + + V+GG          G G        
Sbjct: 938  AADLEQGRVAHGCYVSKALLDQGASANDLAAVVSSVVGGKAGGKGSTSIGNG-------- 989

Query: 877  SGGPNGNKADQAIAGVASFLKK 898
                + +K + AIA  + +L K
Sbjct: 990  ---VHPDKTEDAIALASDYLAK 1008


>gi|134083795|emb|CAK47129.1| unnamed protein product [Aspergillus niger]
          Length = 961

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/980 (31%), Positives = 477/980 (48%), Gaps = 117/980 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57
               +R TFL++F++NGH  + SS ++P +DPTL+FTN+GM  FK+IF G   P      
Sbjct: 12  TSKRVRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFAN 71

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            ++    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK 
Sbjct: 72  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKI 131

Query: 118 FDLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD RRLY+T ++ ++E        A  LW K  G+  D I+     DNFW M + GPC
Sbjct: 132 YGLDPRRLYVTYFEGNKEGGLEPDLEAKDLW-KAVGVPEDHILPGNMKDNFWEMGDQGPC 190

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG
Sbjct: 191 GPCSEIHYDRIGGRNAAH-LVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
            ER+ +VLQ K++NYD D+F  + Q    VTG +                 +RVI DH+R
Sbjct: 250 FERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVR 309

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAYP 338
           +  F I+DG +P N+GRGYV+RR++RR   YAR   G         ++P +  ++G  +P
Sbjct: 310 TLMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGL 396
           EL + +  + E L  E+  F KTLDRG    +     +     + L+G   ++LYDT G 
Sbjct: 370 ELRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADVWRLYDTFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   RGL  ID   F +A    RSRA+  S G    + E +   + +      
Sbjct: 430 PVDLTRIMAEERGL-QIDDREFEEA----RSRAKEASRGQKKTSAETVKLDVHD------ 478

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEV 513
                     K    +               +++ VKAI          +E   G+++ +
Sbjct: 479 --------LGKLEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDGEQLGI 530

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  DTG  + DG   L++ DVQ    G  +H   ++ G      +++
Sbjct: 531 ILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQ-LYAGYVLHTGFMKYGSFSVGDTVI 589

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R  +  NH+ TH+L+ AL T+LG  V Q GS +  + LRFD +H   I+  +L
Sbjct: 590 CEYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAISDKDL 649

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV--- 688
             IE+   + I QN  V ++ +    A   SG  A+ G  Y D VRVVSV  E G +   
Sbjct: 650 ARIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELGEILQN 709

Query: 689 --------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---- 736
                    S   CGGTHV  TG+I  L ++ E  I  GIRRI A+TG+ A         
Sbjct: 710 VKDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDAHEVQRLAAE 769

Query: 737 ---------------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEY----RKLQ 771
                           ++++ K + + L       V +     R   I +E     + LQ
Sbjct: 770 FQKRLDLLEAMPLTPEKEKEAKQIQAELNQLSISAVQKSAFRERFARINKEVIDGQKALQ 829

Query: 772 LIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829
            + +K  L+         +  D +  ++ +    +SK +   ++ ++ K+    + +L  
Sbjct: 830 KLESKVALETITNYFQAPENQDRSWLVAKLPISANSKAISESLNYVKSKLPDKSVYVLAA 889

Query: 830 ISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGG----------GGGGGRPHMAQSG 878
            + + + +    V         +A + A + +  +GG          G G          
Sbjct: 890 STDQGRVAHGCYVSKSSSEAGASASEWAAIVSGAVGGKAGGKGATSVGNG---------- 939

Query: 879 GPNGNKADQAIAGVASFLKK 898
             N ++ D+A++  + +L K
Sbjct: 940 -VNPDRVDEAVSLASDYLGK 958


>gi|219124287|ref|XP_002182439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406400|gb|EEC46340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 955

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/947 (31%), Positives = 460/947 (48%), Gaps = 67/947 (7%)

Query: 6   SIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59
            +R TF  +F +++GH   PSS  +P +DPTL+FTN+GM  +K +F G   P        
Sbjct: 19  KVRDTFKNYFVEQHGHVFWPSSPCVPVDDPTLLFTNAGMNQYKPLFLGTCDPNLEMSKLT 78

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
                QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AI +AW  LT  F 
Sbjct: 79  RAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKAGAIDMAWQCLTVTFG 138

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           LD  RLY T +  DE      EA +LW +   L  D+++     DNFW M  TGPCGPC+
Sbjct: 139 LDPERLYATYFAGDELTPVDEEARQLWLRY--LPDDRVLPFDARDNFWEMGATGPCGPCT 196

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           + +    +EIWN+VF+Q+ ++       LP   +DTGMG ER+
Sbjct: 197 EIHYDRIGG-RDASKLVNADLPDVMEIWNVVFIQYNREADGSLRPLPAQHVDTGMGFERL 255

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ   +NYD D+F  L  A + +TG +               + +RV+ DH+R+  F
Sbjct: 256 TSILQNVDSNYDTDIFIPLFTAIQNITGARPYAKKVGKEDPEYIDMAYRVVADHIRTLCF 315

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQA 343
            I DG +P+N+GRGYVLRR++RRA+ Y R  LG        L+PA    MGSA+PE+++ 
Sbjct: 316 AITDGAVPSNDGRGYVLRRVLRRAVRYGRQNLGAELGFFAKLVPAFVDVMGSAFPEVVEK 375

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +   ++ E+E F +TLD+GL   + +   +G D+I +G  A  LY + G P+D+ + 
Sbjct: 376 QEYVTGIIQEEEESFSRTLDKGLQKFNELAEKVGADQIFSGADAHFLYTSMGFPVDLTEL 435

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   +G+  ++   F   ++E+   ++A  L   +G + K    + E+   +  +G ++ 
Sbjct: 436 MAEEKGMT-LNKEEFEAKMQEEHDISQAAHLAKMAGGSGKDMRLVAEQ--TSYLVGQNIS 492

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                 K           +       +  + ++  G +   +     V +V D++ FYAE
Sbjct: 493 ATDDAAKYVWHEELADCVVKACFIGRNETEDMI--GFVGSISPESSAVGIVLDKSSFYAE 550

Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           AGGQ+ D G      G  ++IT+VQ   +   +H   V  G L    ++  ++DY  R  
Sbjct: 551 AGGQVYDVGTLTSSTGAVVKITNVQAYGQ-FVLHLGEVASGTLSVGDTVKCSVDYVRRAP 609

Query: 583 LSINHSATHLLHHALSTILGS------------HVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++ NH+ TH+L+HAL  +L               V Q GS +    LRFD + S  +T  
Sbjct: 610 IASNHTMTHVLNHALREVLIKRPEKESGKTSTLTVDQKGSLVDETKLRFDFSWSGQLTPE 669

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------- 681
           +L  +E    D I   +PV   +    DA   S   A+ G KY D VRVV+V        
Sbjct: 670 QLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVVAVSDHAVPEM 729

Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
               +      +S   CGGTH+++T E     +++E  I  GIRRI AIT   A+  +  
Sbjct: 730 LANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITAITTGEAKKAIAL 789

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-----KLQLNVEDLSCHKIA 792
            +E    L +   V   ++   V+++  E   L +   K+     +L    + +  +K  
Sbjct: 790 ANEFESKLTAAEVVQGDDLESTVKQLSAELDGLDIAAVKKMQFREQLATMTKQVLAYKKQ 849

Query: 793 DVNFMSHIIS----EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            +   S ++      V+ K  KSVM A  K+++   ++LV    E    ++I      + 
Sbjct: 850 KLAGGSKVVMRFDFGVEGKVAKSVMTAFGKQVKDKALLLVTADPEADRFMVIAGAPKAMK 909

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             N       +A       GGG+P  AQ         D  +     F
Sbjct: 910 DLNCKAWI-EAATDGLDAKGGGKPDSAQYQVSGVEAVDTVLEKARKF 955


>gi|323307226|gb|EGA60508.1| Ala1p [Saccharomyces cerevisiae FostersO]
          Length = 833

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/832 (33%), Positives = 424/832 (50%), Gaps = 68/832 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE----------- 682
           +ED  N+ I +NL V  + +  + A +  G  A+ G  Y D VRVVSV            
Sbjct: 648 VEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPA 707

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            E+   +S   CGGTHV+ TG+I    I+ ES I  GIRRI A+TG  A       ++  
Sbjct: 708 NEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEAFEAQRLAEQFA 767

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
             L +  K+    +  +      + ++L +   +  + +  ++    K   +
Sbjct: 768 ADLDAADKLPFSPIKEK------KLKELGVKLGQLSISVITKNELKQKFNKI 813


>gi|317497358|ref|ZP_07955681.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895427|gb|EFV17586.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 765

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/791 (37%), Positives = 437/791 (55%), Gaps = 44/791 (5%)

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
            LD  RLY +VY++D+EAF++W+K  G++ ++I R    DNFW     GPCGPCSEI++D
Sbjct: 3   GLDPDRLYPSVYEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHGA-GPCGPCSEIYYD 61

Query: 179 QGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           +GE    G P  +   + +RY+E+WN VF QFE         L   +IDTGMGLER+A V
Sbjct: 62  RGEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVV 121

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294
           +QE  + +D+D  K +     +V G+ Y  ++   V+ RVI DH+RS++F+++DGI P+N
Sbjct: 122 VQEVDSIFDVDSIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSN 181

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGYVLRR++RRA  + RLLG     +  +   +  E    YPEL +    I   L  E
Sbjct: 182 EGRGYVLRRLIRRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQE 241

Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +++F KT+D+GL +L  +   +     + L G  AFKLYDT+G PLD+  +IL  +G   
Sbjct: 242 EKQFNKTIDQGLSILADMEKAMNEKGSKELAGADAFKLYDTYGFPLDLTIEILEEKGFT- 300

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F + ++ QR  ARA          +   +   +    T+F+GYD L         
Sbjct: 301 VDKEGFEKEMQVQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL--------- 351

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                              + A+  + E+V     G K  +V DQT FYA +GGQ  D G
Sbjct: 352 --------------TCEGEITAMTTETEVVSALNKGDKGTIVADQTAFYATSGGQEADKG 397

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
             I      ++ DV K + G F H   V  G        V T++ +NR   + NHSATHL
Sbjct: 398 VIISGDASFEVEDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHL 457

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  AL  +LG+HV Q GS    + LRFD TH  P++  E+  +E  VN+ IAQ+LPVVT+
Sbjct: 458 LQKALREVLGTHVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTK 517

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M+ E+A  +GA AL G KY D VRVVS+     G  S  LCGGTHV +TG I    I+S
Sbjct: 518 VMSMEEAKKTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILS 572

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E+ + +G+RRIEA+T Q   ++   Q+E+LK  A  LK +   ++ R+E +  E ++L+ 
Sbjct: 573 ETGVASGVRRIEAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKS 632

Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
            +   K +L  + L        ++  V  ++  I +VD   L+ + D L++K+  G+I+L
Sbjct: 633 ENESLKSKLAKDALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVL 692

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
               K+ K  ++ +VT++      +A +L +  A  +GGGGG GRP+MAQ+GG N     
Sbjct: 693 AS-QKDGKVFLVAMVTDEAQKAGAHAGNLIKAIAGCVGGGGG-GRPNMAQAGGKNPAGIP 750

Query: 887 QAIAGVASFLK 897
           +A+A V   L+
Sbjct: 751 EAVAKVKEILE 761


>gi|167518337|ref|XP_001743509.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778608|gb|EDQ92223.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1000

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/927 (32%), Positives = 449/927 (48%), Gaps = 88/927 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
           N + +R T+++FF +K  H   PSSS +P +DPTL+F N+GM  FK +F G   P     
Sbjct: 8   NAAKVRQTYIDFFVEKKEHVFWPSSSSVPHDDPTLLFCNAGMNQFKKVFQGTVDPNSDMA 67

Query: 60  ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  AIQ +++LLT+
Sbjct: 68  KVSRTVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKAEAIQWSFELLTE 127

Query: 117 EFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + L   RLY T ++        ED EA +LW K+  L AD ++     DNFW M  TGP
Sbjct: 128 VYGLSADRLYATYFEGDTEQNIPEDVEAKELWLKL--LPADHVLPGNKKDNFWEMGATGP 185

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSE+ +D+           +++    +EIWNLVFMQF ++      +LP   IDTGM
Sbjct: 186 CGPCSELHYDRIGG-RNAASLVNQDDPDVLEIWNLVFMQFNREPDASLRLLPARHIDTGM 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------IVNHRVIVDHLR 280
           GLER+ +VLQ+K +NYD D+F+      +QV G +                +RV+ DH+R
Sbjct: 245 GLERLVSVLQDKRSNYDTDVFQPYFDVIQQVCGCRPYAGKVGKEDDGIDTAYRVLADHIR 304

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  I+DG  P N GRGYVLR I+RRA+ +A   L   E     L+P +  ++G A+PE
Sbjct: 305 TLTISISDGGEPDNTGRGYVLRLIIRRAVRFAEDYLKAPEYFFSSLVPTVVEQLGDAFPE 364

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    + E L++E+++F +TL+RG  L          D +++G VA++L+ T+G P+D
Sbjct: 365 IKRDPEHVIEVLKAEEKQFRRTLNRGRRLFQRAADKAT-DGVIDGHVAWQLWGTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + + +   RGL  +D  +F  A    R  A   S        E I   + +         
Sbjct: 424 LTKVMAEERGLT-VDEKTFEAA----REEAVKVSQMGKKMAIEGIDLDVHDL-------- 470

Query: 460 YDLLRGSKFMKEDRKVLCQK----PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VE 512
            D L+       D                   + + V A+  +   V+          V 
Sbjct: 471 -DKLKADGIAATDDSFKYDYGLVGDNSYEFKDLEAKVVALRTESGFVDSLDGSDDSVNVG 529

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           VV D+T FYAE GGQ  DTG            + DVQKK     +H  ++  G L+   +
Sbjct: 530 VVLDRTNFYAEQGGQTYDTGFFRDANGELDFTVMDVQKKGP-YCLHIGVLSNGTLKVGDT 588

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L L+ D + RR    NH+ATH+L+ AL  +LG    Q GS + P+ LRFD T  K +T  
Sbjct: 589 LTLSFDVERRRPCMSNHTATHVLNFALRKVLGE-ADQKGSLVEPERLRFDFTAKKGMTIE 647

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------- 682
           +++  E  VN+++    PV         A   +G  A+ G  Y D VRVVSV        
Sbjct: 648 QIQQTEKLVNEVVNAKKPVDAMDAPLASAREINGLRAMFGETYPDPVRVVSVGAIVKDVL 707

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                E    +S   CGGTHV ++G+I+   I++E +I  GIRRI A+TG  AR      
Sbjct: 708 DDPVSEVALANSIEFCGGTHVKNSGDIVQFAILNEEAISKGIRRIVAVTGSEARKAQTEA 767

Query: 739 DEKLKSLASFL----------KVSQGNVVG-RVEEIWEEYRKLQLIH-----AKRK---- 778
           +     +   L          +VSQ  +   R + I    + L   H      +RK    
Sbjct: 768 NRLDAEVRDDLTMKEVVALDTEVSQAAIPATRKDAIRSRLKALHKKHSDVLKERRKAMAG 827

Query: 779 -LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
             +   ++L   +   V  +  +    + K +   +  L+        M  G+ +E   +
Sbjct: 828 NAEKRAKELLEEEAKPV-VVEVLEVGANGKAIGEALKVLKVGRPDTAFMFFGV-EEGGVA 885

Query: 838 VLIVVTEDLLDR-FNAVDLARLSAKVL 863
              +V E L+ +   A D      KVL
Sbjct: 886 FNCMVPEALVAKGLKAGDWVSEVNKVL 912


>gi|310789965|gb|EFQ25498.1| tRNA synthetase class II [Glomerella graminicola M1.001]
          Length = 955

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/965 (32%), Positives = 480/965 (49%), Gaps = 97/965 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVYQ--AV 61
           +R TFLEFF+K GH ++PSSS++P NDPTL+FTN+GM  FK IF G   +  P+Y     
Sbjct: 11  VRKTFLEFFEKRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTISKADPMYPLKRA 70

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD
Sbjct: 71  TDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEWSWELLTKVYGLD 130

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +         EA  LW+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 131 PDRLYVTYFEGNPDMGLEPDLEAKGLWQSV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 189

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+ +D+           +++    +EIWN VF+Q+++Q  +    LP   +DTGMG ER+
Sbjct: 190 EVHYDKIGG-RNASDLVNQDDPMVVEIWNNVFIQYDRQPDRSLKSLPAKHVDTGMGFERL 248

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            + LQ   +NY  D+F  L +  E+VTG +   +             +RVI DH+R  +F
Sbjct: 249 VSALQNTVSNYATDIFTPLFKRIEEVTGARPYTDKYGADDVDGIDTAYRVIADHIRLLTF 308

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            ++DG +P N+GRGYV+RR++RR + YAR     E       +LPAL  +MG  +PE+++
Sbjct: 309 SMSDGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGSFFSKILPALVDQMGEQFPEIVK 368

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400
            +  I E L  E+E F +TLDRG    +   +      ++ L+G   ++LYDT G P+D+
Sbjct: 369 KQDDIREILDEEEEAFARTLDRGEAQFEKYANAAIKKGEKKLSGAEVWRLYDTFGFPVDL 428

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L  ID      A ++ R  ++                    K     F   
Sbjct: 429 TKLMAEERKLE-IDDDEVKAAQDKAREASKV------------------VKNSVQTFAKL 469

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
           ++ + ++  ++            +     + V+ I      V+          + ++ D+
Sbjct: 470 NVHQIAELEQQLNVARTDDDAKFVKGDSKAKVQLIYDGKGFVKSTKDIAENTPLGLLLDK 529

Query: 518 TPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE+GGQ+ DTG  + D +   ++ DVQ    G  VH+  +E G+L +   ++   D
Sbjct: 530 TNFYAESGGQVADTGRIVIDDVAEFKVLDVQ-NHGGYIVHNGYLEYGVLSSGNEVICEYD 588

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ATH+L+H+L  +LG  V+Q GS +  + LRFD +H   +T  ELK IE
Sbjct: 589 ELRRSPIRNNHTATHILNHSLREVLGDDVNQKGSLVDNEKLRFDFSHKTGVTIPELKKIE 648

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEYE 684
           D  N  I QN  +  + ++ + A    G  A+ G  Y + VRVVS            +  
Sbjct: 649 DFSNSYIRQNGKIYAKEVDLDLAKGIEGVRAVFGETYPNPVRVVSVGVDVDTLLANPKNP 708

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           +    S   CGGTHV  TG I  L IV ES I  GIRRI A TG  A       DE  K 
Sbjct: 709 EWRKISVEFCGGTHVDQTGLIKDLVIVEESGIAKGIRRIIAYTGDAAHQVQREADEFSKR 768

Query: 745 LASF------------LKVSQ-------------GNVVGR----VEEIWEEYRKLQLIHA 775
           L +             +K +Q              ++  R    ++ + +E +K Q   A
Sbjct: 769 LDALEVLPFGPEKEQEIKTTQHALNQLTISTLTKEDIKKRFDKIIKAVTDEQKKRQKAEA 828

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS-KEK 834
           K  L   V     +K +   F+  +    ++K +  V+   Q K +   + L G S  E 
Sbjct: 829 KTALDTVVAHFDKNKDSKW-FVGQLPISANAKAIGEVVKHFQSKDKERSVYLFGGSKNEG 887

Query: 835 KASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
             +  + V   L      A   A   ++++GG  GG  P   Q  G      D+A+A   
Sbjct: 888 SVAHGVYVGTHLSSQGVTAEQWAAQVSEIVGGKSGGKEPTR-QGQGTKAENLDEAVATAE 946

Query: 894 SFLKK 898
            +LK+
Sbjct: 947 KWLKE 951


>gi|75858922|ref|XP_868801.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4]
 gi|40747680|gb|EAA66836.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4]
          Length = 981

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/986 (31%), Positives = 477/986 (48%), Gaps = 117/986 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++FQ  GH  + SS + P +DPTL+FTN+GM  FK+IF G   P       ++ 
Sbjct: 16  VRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSA 75

Query: 62  TTVQK--CVRAGGKHN------------------DLDNVGRTNRHHTFFEMLGNFSFGGY 101
              QK  C+RAGGKHN                  DLD+VG+ + HHTFFEMLGN+SFG Y
Sbjct: 76  VNSQKMQCIRAGGKHNVGWHPVQAGQVFANICEQDLDDVGKDSYHHTFFEMLGNWSFGDY 135

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIR 153
           FK+ AIQ +W+LLT+ + LD  RLY+T ++ ++E        A  LW K  G+  D I+ 
Sbjct: 136 FKKEAIQYSWELLTQVYGLDPGRLYVTYFEGNKEGGLQPDLEAKALW-KAVGVPEDHILP 194

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
               DNFW M + GPCGPCSEI +D+           +++    +EIWN VF+Q+ ++N 
Sbjct: 195 GNMKDNFWEMGDQGPCGPCSEIHYDRIGG-RNAASLVNQDDPNVLEIWNNVFIQYNREND 253

Query: 214 QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN---- 268
                LP   +DTGMG ER+ +VLQ+K++NYD D+F  + Q  + +TG + Y+G      
Sbjct: 254 GSLRSLPNKHVDTGMGFERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDD 313

Query: 269 ----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLM 322
                  +RV+ DH+R+  F I+DG++P NEGRGYV+RR++RR   YAR     E     
Sbjct: 314 SDGIDTAYRVVADHVRTLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFF 373

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDE 380
             ++P +  ++G  +PEL Q +  + E L  E+  F KTLDRG    +          D 
Sbjct: 374 SKIVPTVVEQLGDMFPELKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTAGDH 433

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
            L+G   ++LYDT G P+D+ + +   RGL  ID   F +A    R +A+  S G    T
Sbjct: 434 KLHGADVWRLYDTFGFPVDLTRIMAEERGLE-IDDRQFEEA----RHKAKEASKGQKKTT 488

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           T  +   + +                K  K +               V++ +KAI     
Sbjct: 489 TGSVKLDVHD--------------LGKLEKMNGVPKTDDSAKFEIGNVTAQIKAIYHGKT 534

Query: 501 IVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVH 556
                      +++ ++ D+T FYAE GGQ  DTG  + DG   L++ DVQ +  G  +H
Sbjct: 535 FHSSTQNLDDSEQIGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQ-QYAGYVLH 593

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              ++ G  + + +++   D   R  +  NH+ TH+L+ AL  +LG  + Q GS ++ + 
Sbjct: 594 TGYMKYGSFKVDDTVICEYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVSAEK 653

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR 675
           LRFD +H  P+T  EL  IED     I +N  V ++ +    A   +G  A+ G  Y D 
Sbjct: 654 LRFDFSHKSPVTDVELVKIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETYPDP 713

Query: 676 VRVVS-----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           VRVVS           VE       S   CGGTHV  TG+I  L I+ ES I  GIRRI 
Sbjct: 714 VRVVSVGAELDEILKNVEDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRII 773

Query: 725 AITGQRARSHLMGQDEKLKSL----------ASFLKVSQGNVV---------------GR 759
           A+TG+ A       +E  K L          A      Q  V                 R
Sbjct: 774 AVTGEDAHEVQRLAEEFEKRLNHLEAMPSGSAKEQNAKQIQVELNQLSISAVQKSRFRER 833

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMD 814
             +I ++    Q    K + +  VE ++ +  A  N      ++ +    ++K +   + 
Sbjct: 834 FTQINKKIIDEQKAQQKLESKKAVESITSYFAAPENANKSWLIAKLPISANAKAVSECLT 893

Query: 815 ALQKKIQSGII-MLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRP 872
            ++ K+   ++ +L    ++ + +    V + + D   +A + +   ++ +GG  GG  P
Sbjct: 894 YVKTKLADKMVYVLASSLEDGRVAHGCYVPKAISDQGASASEWSSAVSRAVGGKAGGKGP 953

Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898
                 G N  K D A+   + +L K
Sbjct: 954 TS-IGNGINPEKVDDAVDLASEYLSK 978


>gi|302923886|ref|XP_003053770.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734711|gb|EEU48057.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 956

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/967 (32%), Positives = 477/967 (49%), Gaps = 96/967 (9%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVY 58
            + +R TFLE+F++ GH ++PSSS++P NDPTL+FTN+GM  FK IF G           
Sbjct: 10  AARVRQTFLEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTDPMAGL 69

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +A    QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A+Q +W+LLTK +
Sbjct: 70  KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVQYSWELLTKVY 129

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            LD  RLY+T ++ DE        EA  LW  + G+  D I+     DNFW M + GPCG
Sbjct: 130 GLDPARLYVTYFEGDEKLKLEPDLEAKDLWLSV-GVPEDHILPGNMKDNFWEMGDQGPCG 188

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI +D+           + +    +EIWN VFMQ+++Q       LP   IDTGMG 
Sbjct: 189 PCSEIHYDKIGG-RNAANLVNMDDPMVVEIWNNVFMQYDRQKDGSLKSLPAKHIDTGMGY 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRS 281
           ER+ + LQ   +NY  D F  L +  E+VTG +   +             +RV+ DH+R+
Sbjct: 248 ERLVSALQNTVSNYATDCFTPLFKKIEEVTGARPYSDKYGKDDADGIDTAYRVVADHIRT 307

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339
            SF IADG +P N+GRGYV+RR++RR + YAR     +       +LPAL  +MG  +PE
Sbjct: 308 LSFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQFPE 367

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           L++ +  I+E L  E+  F +TLDRG    +   +   KD  + L GDV ++LYDT G P
Sbjct: 368 LVKKQQDIKEILDEEEVAFARTLDRGEAQFEKYAAQAVKDGSKKLEGDVVWRLYDTFGFP 427

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +D+ + +   R L   D       +E  R +AR  S  +                    F
Sbjct: 428 VDLTRLMAEERSLEIDD-----AEVEAARIKAREASKAVKESVQ--------------TF 468

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVV 514
              ++ + ++  ++ +          L       V+ I      ++          + ++
Sbjct: 469 SKLNVHQIAELEQQLKVERTNDDAKFLQGDSKGKVQLIYDGKTFLKSTKDIPEKTALGLL 528

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D T FYAE+GGQ+ DTG  + D +    + DVQ    G  +H   +E G L +   ++ 
Sbjct: 529 LDNTNFYAESGGQVADTGRIVIDDVAEFNVLDVQ-NFGGYILHSGYIEYGALNSGDEVIC 587

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
             D   R  +  NH+ TH+L+H+L  +LG  + Q GS +  + LRFD +H   +   ELK
Sbjct: 588 EYDELRRSPIRNNHTGTHILNHSLREVLGDEIHQKGSLVDNEKLRFDFSHKTGVKIEELK 647

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684
            IED  N+ I +  P+ ++ ++ + A    G  A+ G  Y + VRVVS+  +        
Sbjct: 648 KIEDRSNEYIRRGSPIFSKDVDLDLARQIEGCRAVFGETYPNPVRVVSIGKDIDEMLADP 707

Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS-------- 733
              +   +S   CGGTHV  TG I  L ++ ES I  GIRRI A TG+ A          
Sbjct: 708 KNVEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREAAEF 767

Query: 734 ----------HLMGQDEKLKSLASFLK------VSQGNVVGRVEEI----WEEYRKLQLI 773
                         ++ ++K+++  L       +++  +  R ++I      E +K Q  
Sbjct: 768 AKKLDALEKLDFAEKESQVKAVSVELSQLTISTLTKDELNKRFQKISTAVVAEQKKRQKA 827

Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            AK  L   ++    ++ A   F+  +    ++K +  V+   Q K +   + L G SKE
Sbjct: 828 EAKTALDTVLKHFKANEDAKW-FVGRLPIGANAKAVGEVVKHFQGKDKEKSVYLFGGSKE 886

Query: 834 KKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + A V  + V T        A   A   ++V+GG  GG  P   Q  G      D  +  
Sbjct: 887 EGAVVHGVYVGTHLSSQGVTAEQWAASVSEVIGGRSGGKEPTR-QGQGTKPENLDDGVET 945

Query: 892 VASFLKK 898
              +L +
Sbjct: 946 ATKWLSE 952


>gi|291228549|ref|XP_002734240.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii]
          Length = 1016

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/952 (30%), Positives = 466/952 (48%), Gaps = 91/952 (9%)

Query: 1   MSNVSSIRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           +     IR  F+++F++   H  +PSSS+IP  D TL+FTN+GM  FK+IF G   P   
Sbjct: 50  ILTSGEIRRKFIDYFKEKQSHLFVPSSSVIPREDKTLLFTNAGMNQFKSIFQGAVDPSSP 109

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
              Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+   ++AWDLL
Sbjct: 110 IVKYRRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKETCEMAWDLL 169

Query: 115 TKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
              + L   RLY+T +  ++        E   +WK I G++ D+I+    N+NFW M   
Sbjct: 170 INVYGLSSNRLYVTYFGGNQQLGLSPDIECRNIWKNI-GVAEDRILPYGMNENFWEMGTI 228

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCG CSEI +D+           +++    +E+WNLVF+Q+ ++       LP+ +IDT
Sbjct: 229 GPCGMCSEIHYDRI-GNRNATSLINKDDPSVLELWNLVFIQYNREEDGCLSKLPQHNIDT 287

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVD 277
           GMGLER+ +++Q   +NYD DLF+ LIQ  ++ T         G     N  + +RV+ D
Sbjct: 288 GMGLERLVSIIQGVDSNYDTDLFQPLIQEIQKCTSMPPYQGLVGDSDNENIDMAYRVLAD 347

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ +  I DG  P N  + Y+++R++RRA+ YA   L  +      L+P +   +G A
Sbjct: 348 HIRTLTIAITDGARPGNFKQSYIIKRLIRRAVRYATEKLNASPGQFASLVPIVVDTLGDA 407

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           YPEL+     + + +  E++ F K L +G   LD  +S L +  IL GD+A+K+YD  G 
Sbjct: 408 YPELLTNPQQVIDVINREEDLFLKQLKKGRKFLDKKISKLKEPRILPGDIAWKMYDGFGF 467

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +   +G++ +D+  + +  E      + H +    G   ++ +       A Q
Sbjct: 468 PIDLTILMCNEKGVS-VDMEGYEEVKE------KTHQITSQGGIKNQLEYGF--DTNALQ 518

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
            + +  +  +    +     C          +++ + ++   G+ VE     Q  +V+  
Sbjct: 519 QLKHQNISTTDDSYKY-SYECDDDGNYEFEVITAKITSLRVGGQFVESVEPDQSCDVILH 577

Query: 517 QTPFYAEAGGQLGDTGCA--IGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEMSLVL 573
           QT FYAE GGQL D G    +GD  +  + +V   +  G +V H+   +  L     L L
Sbjct: 578 QTCFYAEQGGQLWDDGYFTKLGDEAQQIVFEVDNVQIYGGYVVHSGTTKKTLSVGEQLKL 637

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            I+ + R  L  NH+A H+L+ +L  + G  + Q GS + PD LRFD T+   +TS ++K
Sbjct: 638 HINEERRLGLMRNHTAAHILNWSLRHLHGDGIEQRGSLVAPDRLRFDFTYEDSLTSLQVK 697

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHS-- 690
            I+D VN++I Q  PV ++ +  ++A    G  A+ G  Y D V+VVSV     G+ +  
Sbjct: 698 EIQDQVNEVIEQYTPVDSQEVELDEAKQIEGLRAVFGEVYPDPVQVVSVGIPVTGLLTNP 757

Query: 691 ---------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                      LCGGTHV  T  I  L I+ E  + +G+RRI AITG          D+ 
Sbjct: 758 FGPGGFMSPVELCGGTHVHMTEHIGKLVIIDEGKVSSGVRRITAITGSDGWEADRKADDL 817

Query: 742 LKSLASFLKVSQGNVVG---------------------------RVEEIWEEYRKLQLIH 774
           L  ++   K  + ++                             R  E+ EE  KL+   
Sbjct: 818 LVKVSELKKQIEESIENLTPSLRVLFDEANNLLEVVGASPIPLWRSRELKEELFKLKEDI 877

Query: 775 A---KRKLQLNVEDLSCHKIADVN-------FMSHIISEVDSKELKSVMDALQKKIQSGI 824
               K++ ++ V++         N        +  I +  ++K L  +MD  +    S  
Sbjct: 878 KSFDKKRKKMAVKEAISQAADMANDRLDRPFIVKEIHTGSNTKALMQIMDIFKNTTPSSA 937

Query: 825 IMLVGISKEKKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           I+L G+ K+      +  T    +     A    +    ++  G  GG+  M
Sbjct: 938 ILLYGVDKDDCTITCVCYTPKHAIEQGLKANGWLQHVNSLV-DGKVGGQDTM 988


>gi|294786852|ref|ZP_06752106.1| alanine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226488|ref|ZP_07868276.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485685|gb|EFG33319.1| alanine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315120620|gb|EFT83752.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 903

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/928 (35%), Positives = 495/928 (53%), Gaps = 71/928 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   F+ +F+K GH ++PS+SLI  N PT +FT +GMVPF     G++ P  + +
Sbjct: 1   MRTSEIAKRFVTYFEKQGHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRM 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+ QKCVR      D+D VG+T RH TFF+MLGNFS G YFK+ AI  AWDLLT      
Sbjct: 60  TSNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKKEAIHYAWDLLTSPQDQG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  ++ +L++T Y +DEEA  LW K  G+  + +  +   DNFW+    GP GPC+EI+
Sbjct: 116 GYGFEKDKLWVTTYTDDEEARSLW-KTEGMDPEHMQVLGMEDNFWTTGGPGPGGPCTEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G      RYIEIW+LVF  FE  N + +        L   +IDTGMGL
Sbjct: 175 VDRGPEY-GPDGGPIASESRYIEIWDLVFENFEVDNVKSKTNLHIVGELANKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+ +E+++G KY  +  + V  RV+ DH+RS+  ++ D
Sbjct: 234 ERVAYLLQGKQNIYETDEIFPVIEEAERLSGRKYGDDPEDDVRFRVVADHVRSALMIMGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   ++LG  + +  HLLP    +M  +YPEL  +   + 
Sbjct: 294 GVRPSNEGRGYVLRRLIRRSIRAMKMLGVEQEVFPHLLPVSEAQMKLSYPELESSFAEVS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--------EILNGDVAFKLYDTHGLPLDI 400
           ET   E+  F +TLD+G  +LD  +S   KD         +++G  AF L+DT+G P+++
Sbjct: 354 ETAFGEEAAFRRTLDQGSTILDVAISQAKKDASEKGQEQPVVSGKEAFTLHDTYGFPIEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIG 459
             +I   +G+ G+D  SF + + EQ+ RARA +L         ++   K+      +F G
Sbjct: 414 TTEIAREQGV-GVDDRSFRELMAEQKQRARADALKKRHNVDLSVYDDAKKALAKPIEFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y                         +   +++  I ++   V  A +   VEV+ D+TP
Sbjct: 473 YKE----------------------FSSRGTVLAIIDEETGSVRSASAPATVEVILDRTP 510

Query: 520 FYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQ+ D G    D G  L++ DVQK  + ++V H  +  G L     +  +ID  
Sbjct: 511 FYAEQGGQMADYGEIESDQGAVLEVDDVQKPVKDLYVQHCRLTEGSLTVGDQVSSSIDVD 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  ++  H+ATH+LH  +  +LG   +Q+GS + PD LRFD   SK +T  +L  IE  
Sbjct: 571 RRIGMTHAHTATHVLHKVVREVLGEKATQSGSVVDPDRLRFDFHWSKALTQDQLGQIEAR 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I  +L V  + M  +DA+  GA  L G KY D VRVV++  +     S  LCGGTH
Sbjct: 631 VNARIRDDLEVSWKNMPIDDALELGAMHLFGDKYGDIVRVVTIGNDGW---SRELCGGTH 687

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
            S TG I    ++SESS+  G+RRIEA+ G ++  +   Q + +  LA+ L      V  
Sbjct: 688 ASRTGTIGSFTLISESSVGTGLRRIEALVGAKSYEYNHRQHQVINRLANGLNARADEVET 747

Query: 759 RVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEVD------SKEL 809
           RV  + E  ++ Q   A   +R++   +  L     +       +++  +      ++ L
Sbjct: 748 RVLGLEESLKEAQAKLASIYERQISAMIPALVDQAKSGSPDADLLLAIRNVGSFGSAEAL 807

Query: 810 KSVMDALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLG 864
           +  +   + ++      ++ L G+S E    V+ V T +   +    A DL R + +VLG
Sbjct: 808 RKAVTDTRAQLGEDKAAVVCLAGVSSETGKPVIFVATNEAARKAGIKAGDLVRSAFQVLG 867

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           GGGG G+P  AQ GG + ++ D A+  V
Sbjct: 868 GGGG-GKPDFAQGGGQDASRLDAALKIV 894


>gi|189203303|ref|XP_001937987.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187985086|gb|EDU50574.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 966

 Score =  724 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/984 (31%), Positives = 472/984 (47%), Gaps = 121/984 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + + +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 11  SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLT  
Sbjct: 71  LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130

Query: 118 FDLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + +D +RLY+T ++  +      EA +LWK + G+  D I+     DNFW M + GPCGP
Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGP 189

Query: 172 CSEIFFDQGECIPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSE+ +D  E   G         + +    IEIWN VFMQ+ ++  +    LP   IDTG
Sbjct: 190 CSEVHYDLREPEGGKYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +VLQ K +NYD D+F  L +  +++TG +                 +RV+ DH
Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQEITGAREYRGKFGAEDPDGIDTAYRVVADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R  SF IADG +P N GRGYV+RR++RR   YAR    T+       ++P L  +MG  
Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
           +PE+ + +  I E L  E++ F K+LDRG V+ +     + +   + L GD  ++LYDT+
Sbjct: 370 FPEIKKKQQDIVEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL   D     + +EE + +AR  S G        + F + +    
Sbjct: 430 GFPVDLTKLMAEERGLKIDD-----KEVEEAQEKAREASKGDKKAAGALVKFDVHDLGA- 483

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511
                  L       K D      +        ++S++KAI    + ++   E   G++ 
Sbjct: 484 -------LENMPDVPKTDDSAKYGR------ENITSVIKAIYHNKKFLKSTKEVPEGEQF 530

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            V+ D+T FYAE GGQ  D G  + DG   + IT+VQ    G  +H   ++ G L     
Sbjct: 531 GVLLDRTNFYAEQGGQEYDMGKLVVDGEACIDITNVQ-VYAGYVLHTGYLQDGELSVGSE 589

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++   D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +H   ++ A
Sbjct: 590 VIAEFDESRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSEA 649

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV---------- 679
           EL  +E   +  I ++  V  + +    A    G  A+ G  Y D VRVV          
Sbjct: 650 ELDKVESISSKYIKEDAKVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSVGVPVEELL 709

Query: 680 -SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-- 736
             V+ E     S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ A       
Sbjct: 710 ADVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYRVQRLA 769

Query: 737 -----------------GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
                             ++ + K +   L     + + +  ++ +++ K+Q      + 
Sbjct: 770 TQFQERVEAMGKMPFGPQKEAEAKKIGVDLNNLTISALAK-AKLRDQFAKIQKSMLDEQK 828

Query: 780 QLNVEDLSCHKIADVNFM-----SHIISEVD-----SKELKSVMDAL---QKKIQSGIIM 826
                D          F        ++ ++D     +K +   +  +   +  ++   + 
Sbjct: 829 AAAKADNKRVMDEVNKFFEDETKKFMVKKLDWSSNVNKAISEAIKTISGPKSALKDRSLY 888

Query: 827 LVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP------------H 873
           L   S +E K      V+E      NA       A  +        P             
Sbjct: 889 LFSASPEEGKVVHGCYVSEPFK---NAGADGPKWASAVT-------PIIGGKAGGKPGAP 938

Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897
            A   G N +K D+ +     +++
Sbjct: 939 TAIGQGTNADKVDEGVEEARKWIE 962


>gi|187250451|ref|YP_001874933.1| alanyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|205830087|sp|B2KAQ0|SYA_ELUMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|186970611|gb|ACC97596.1| Alanyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 868

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/910 (33%), Positives = 477/910 (52%), Gaps = 57/910 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR +FL FF+  G  ++ SSSLIP  DPTL+FT++GMV FK  F G +K ++   
Sbjct: 1   MDSKEIRASFLNFFKSKGCTVVASSSLIPQADPTLLFTSAGMVQFKANFLGLDKSLH-RA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            T QKCVR      D+D+VG TNRH TFFEMLGNFSFG YFKE+AI  AW+ LT+   + 
Sbjct: 60  VTCQKCVRT----TDIDSVGFTNRHLTFFEMLGNFSFGDYFKEQAINWAWEYLTQTLQIP 115

Query: 122 QRRLYITVY-----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
             +LY+++Y     + D EA+  W K   L  +KI  +   DNFW+M  TGPCGPCSEI+
Sbjct: 116 AEKLYVSIYKGGIAERDNEAYNFWLK--HLPKEKIFELGEKDNFWTMGPTGPCGPCSEIY 173

Query: 177 FDQGECIPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           +D G+            +  R++EIWN+VF QF++++      L + +IDTGMGLER+  
Sbjct: 174 YDFGDKGCKNKNCNIECDCGRFVEIWNIVFTQFDRKDDGSIVPLSQKNIDTGMGLERLVM 233

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +Q   + ++ DLF   I  ++++  ++      I   R++ DH+RSS FLI++GILP+N
Sbjct: 234 AMQNVQSPFETDLFTPTINEAKKLLKIEGKIKEEISTLRIVSDHIRSSVFLISEGILPSN 293

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ Y +L G   P +  L+  +    G  YPE+   K  I   +++E
Sbjct: 294 EGRGYILRRLIRRALRYGKLAGVKGPFLHLLVSVIDLHFGEIYPEIRNNKNYISSVIKTE 353

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           +E F KTL+ G   L+ ++    K   ++G+ AF LY+T G P+++ ++I  A+GLA +D
Sbjct: 354 EEAFFKTLENGEERLEDIIKKSKK--TISGENAFYLYETFGFPVELTKEIALAKGLA-LD 410

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             SF +A +E R ++R  S        + +     E      F+GY+ ++          
Sbjct: 411 EESFEKAKKEAREKSR--SYADEFSKEKLVVLQKIENSLKNTFVGYEQIQTK-------- 460

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         S ++  +  + E V+E         V D+TPFYA  GGQ+GD G  
Sbjct: 461 --------------SKVLIVLNDKFEQVKELSG--PGYAVLDKTPFYATGGGQMGDRGAF 504

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                +  ++  +K    I +H   V  G+L+    + + ID  NR++ + NH+A HL++
Sbjct: 505 SWKDGQALVSTAEKPLSNIILHAVEV-SGVLKEGSEIEVKIDPVNRKKTAANHTAVHLIN 563

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  ++G  V Q GS ++ D  RFD T     TS +L  + +  N+ + +  PV   I 
Sbjct: 564 EALRQVIGESVHQAGSFVSADVFRFDYTAPHAPTSEQLARVFEMANNAVIRAHPVNCEIR 623

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIV 711
             EDA   GA  L+G +Y D  R V V          +S  LCGGTHV++T EI+ + ++
Sbjct: 624 PLEDAKKLGAVTLVGEQYADPARFVMVGANFNEPSLKYSLELCGGTHVNNTSEIITVILI 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            E ++ AG+RRIE + G  A  +L      L ++A  L+ S   V  RV  + E+ +  +
Sbjct: 684 KEGALSAGVRRIEGVAGIAAIDYLKENTHALSAMAKTLETSLKEVPARVNSVLEDLKAAK 743

Query: 772 LIHAKRKLQLNVEDLSCHKIA-----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              A  + +L        ++          +S      + KEL+++ D+L +K +  +I+
Sbjct: 744 KEIASLRQKLLTGGSGGTQVKEDVLNGKKIISMKAEGANPKELRTLADSLSQKHKDAVIV 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +   + ++++ V   V +      +A  LA+  A  +  G  GG+   AQ G       +
Sbjct: 804 IAVDNGDRRSFV---VKKAEGSNTDACTLAKGLAGKME-GSAGGKADFAQGGCK-VTDWN 858

Query: 887 QAIAGVASFL 896
           + +  +   L
Sbjct: 859 EFLKTIKELL 868


>gi|294790797|ref|ZP_06755955.1| alanine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458694|gb|EFG27047.1| alanine--tRNA ligase [Scardovia inopinata F0304]
          Length = 900

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/931 (34%), Positives = 492/931 (52%), Gaps = 69/931 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S I   F+ +F+K+ H +LPS+SLI  N PT +FT +GMVPF     G++ P  + V
Sbjct: 1   MRTSEIAKQFVTYFEKHDHLVLPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-----K 116
           T+ QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AI  AW+LLT      
Sbjct: 60  TSNQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKAEAIHYAWELLTLPQDQG 115

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            +  ++ +L++T Y +DEEA  LWK   G+  + +  +   DNFW+    GP GPCSEI+
Sbjct: 116 GYGFNKDKLWVTTYTDDEEARSLWKNE-GMDPEHMQVLGMEDNFWTTGGPGPGGPCSEIY 174

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
            D+G    G   G   +  RYIEIW+LVF  FE  N + +        L   +IDTGMGL
Sbjct: 175 VDRGPEY-GSDGGPIADENRYIEIWDLVFENFEVDNVKSKTDMHIVGELANKNIDTGMGL 233

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ D    +I+ +E+++G+ Y  +  N V  RV+ DH+RS+  ++ D
Sbjct: 234 ERVAYLLQGKENIYETDEVFPVIEEAERLSGLTYGEDPHNDVRFRVVADHVRSALMIMGD 293

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   ++LG    +  HLLP    +M  +YPEL  +   + 
Sbjct: 294 GVRPSNEGRGYVLRRLIRRSIRAMKMLGVDHEVFPHLLPVSKAQMRLSYPELDDSFDEVC 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--------LNGDVAFKLYDTHGLPLDI 400
           ET   E+  F +TLD+G  +LD  +S      +        ++G  AF L+DT+G P+++
Sbjct: 354 ETAYGEEAAFRRTLDQGSSILDLAISKAKDGALKAGSDSPRVSGKDAFALHDTYGFPIEL 413

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIG 459
             +I   +G+  +D  +F   + +Q+ RARA +L         ++  +++      +F G
Sbjct: 414 TTEIAREKGVE-VDQNAFRDLMAQQKRRARADALRKRHNVDLSVYDDVRKALKEPIEFTG 472

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y                         +    ++  I ++   VE       VE+V D+TP
Sbjct: 473 YKE----------------------YSSRGKVLAIIDEELGSVESVTGPATVELVLDRTP 510

Query: 520 FYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           FYAE GGQ+ D G    D G  L + DVQK  + ++VHH ++  G +     +   ID Q
Sbjct: 511 FYAEQGGQMADYGQISSDKGASLDVDDVQKPVKDLYVHHCLLTEGTISLGDEVSSAIDVQ 570

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  ++  H+ATH+LH  +  +LG   +Q+GS + PD LRFD   SK +TS++L  IE  
Sbjct: 571 RRIGMTHAHTATHVLHKVVREVLGQKATQSGSVVDPDRLRFDFHWSKALTSSQLHQIESR 630

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I  +L V  + M    A++ GA  L G KY D VRVV++  +     S  LCGGTH
Sbjct: 631 VNARIRDDLEVTWKNMPINQALSLGAMHLFGDKYGDVVRVVTIGSDGW---SRELCGGTH 687

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
            + TG I    ++SESS+  G+RRIEA+ G ++      Q   +  LAS L      +  
Sbjct: 688 AARTGTIGSFTLLSESSVGTGVRRIEALVGDKSYEFNHSQHSLINKLASDLNSRPDELEE 747

Query: 759 RVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKS 811
           R+  + +  ++     A+   ++++  +  L     A  + +      V      + L+ 
Sbjct: 748 RLTALEDRLKESDRKLAQIYEKQIEDMIPQLVSQTQASADPVWVASKNVGVFGSVEALRK 807

Query: 812 VMDALQKKIQS---GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGG 866
                + ++      ++ LVG+S +    ++ V T     +    A DLAR ++K+LGGG
Sbjct: 808 AATDTRSRLGDDKPAVVALVGVSSDSGKPIICVATNAPARKNGIKAGDLARAASKILGGG 867

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GG G+P  AQ GG + ++A+ A+  +   ++
Sbjct: 868 GG-GKPDFAQGGGQDASQAEAALDEIKRQVE 897


>gi|330934785|ref|XP_003304705.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1]
 gi|311318587|gb|EFQ87206.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1]
          Length = 966

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/982 (30%), Positives = 467/982 (47%), Gaps = 117/982 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           + + +R TFL++F++ GH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P      
Sbjct: 11  SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+LLT  
Sbjct: 71  LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130

Query: 118 FDLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           + +D +RLY+T ++  +      EA +LWK + G+  D I+     DNFW M + GPCGP
Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGP 189

Query: 172 CSEIFFDQGECIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CSE+ +D  E   G         + +    IEIWN VFMQ+ ++  +    LP   IDTG
Sbjct: 190 CSEVHYDLREPEGGKYRNVASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
           MG ER+ +VLQ K +NYD D+F  L +  + +TG +                 +RV+ DH
Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQDITGAREYRGKFGAEDPDGIDTAYRVVADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336
           +R  SF IADG +P N GRGYV+RR++RR   YAR    T+       ++P L  +MG  
Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394
           +PE+ + +  I E L  E++ F K+LDRG V+ +     + +   + L GD  ++LYDT+
Sbjct: 370 FPEIKKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+D+ + +   RGL   D     + +++ + +AR  S G        + F + +    
Sbjct: 430 GFPVDLTKLMAEERGLKIDD-----KEVDDAQEKAREASKGDKKAAGALVKFDVHDLGA- 483

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511
                  L       K D      +        ++S++KAI    + ++   E   G++ 
Sbjct: 484 -------LENMPDVPKTDDSAKYGR------ENITSVIKAIYHNKKFLKSTKEVPEGEQF 530

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ D+T FYAE GGQ  DTG  + DG      D  +   G  +H   ++ G L     +
Sbjct: 531 GVLLDRTNFYAEQGGQEYDTGKLLVDGEAEISIDNVQVYAGYVLHTGYLKYGELSVGSEV 590

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L++AL  +LG+ V Q GS + P+ LRFD +H   ++ AE
Sbjct: 591 IAEFDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAE 650

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV----------- 679
           L  +E   +  I ++  V  + +    A    G  A+ G  Y D VRVV           
Sbjct: 651 LDKVESISSKYIKEDAQVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSVGVPVEELLA 710

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--- 736
            V+ E     S   CGGTHV  TGEI  L I+ ES I  GIRRI A+TGQ A S      
Sbjct: 711 DVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYSVQRLAA 770

Query: 737 ----------------GQDEKLKSLASFLKV------SQGNVVGRVEEIWEEYRKLQLIH 774
                            ++ + K +   L        ++  +  +  +I +     Q   
Sbjct: 771 EFQERVEAMGKMPFGPQKEAEAKKIGVDLNNLTISALAKAKLRDQFAKIQKSILDEQKAA 830

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ-------KKIQSGIIML 827
           AK   +  +++++     D         +  S   K++ +A++             + + 
Sbjct: 831 AKADNKRVMDEVNKFFEDDTKKFMVKKLDWSSNVNKAISEAIKTISGPKSALKDRSLYLF 890

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP------------HMA 875
               +E K      V+E      NA       A  +        P              A
Sbjct: 891 SASPEEGKVVHGCYVSEPFK---NAGADGPKWASAVT-------PIIGGKAGGKPGAPTA 940

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
              G N +K D+ +     +++
Sbjct: 941 IGQGTNADKVDEGVEEARKWIE 962


>gi|296129664|ref|YP_003636914.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021479|gb|ADG74715.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 897

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/931 (33%), Positives = 487/931 (52%), Gaps = 70/931 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F    H ++PS  LI   DP+++FT +GMVPF     G +   +  V
Sbjct: 1   MRTAEIRQRWLDYFASKDHAIVPSVPLISP-DPSILFTIAGMVPFIPYILGTQDAPWPRV 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
              QKC+R     ND++NVGRT RH TFF+MLGNFSFG YFKE AI+LAW  LT      
Sbjct: 60  ANAQKCIRT----NDIENVGRTTRHGTFFQMLGNFSFGDYFKEGAIELAWGFLTGAQESG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  RL++T+++ED+EA     ++ G+    ++R+T  + FW   + GP GPC+E  
Sbjct: 116 GLGLDGDRLWVTIWNEDDEAADALVRV-GVDPRHVVRLTREEIFWDTGQPGPAGPCAEWH 174

Query: 177 FDQGECIPGGLPGSSEE--GERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMG 229
           +D+G        G + +  G+RY+EIWNLVF QF +   +         L + +IDTG G
Sbjct: 175 YDRGPEFGPDAVGGTVDPGGDRYLEIWNLVFDQFVRGEGRGKDYPLLGELERKAIDTGAG 234

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
           LER+A +LQ K N Y+ D    +I+ + +++G +Y   G + V  RV+ DH+RS+  LI 
Sbjct: 235 LERIAYLLQGKNNLYETDEVFPVIERAAELSGRRYGASGEDDVRLRVVGDHVRSALMLIG 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+NEGRGYVLRR++RRA+   RLLG  +  +  LLP     MG +YPE+++    I
Sbjct: 295 DGVTPSNEGRGYVLRRLVRRAVRSMRLLGVEDAALPELLPISRDLMGVSYPEVVRDFDRI 354

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-----ILNGDVAFKLYDTHGLPLDIMQ 402
            +    E++ F +TL  G  + +G +S           +L G+ AF L+DT+G P+D+  
Sbjct: 355 SQVAYGEEDAFLRTLTAGTTIFEGAVSKAKAGADGTGVVLTGEQAFALHDTYGFPIDLTL 414

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL------KEKYGATQ 456
           ++    G+  +D  +F   ++ QR RARA +L   +G  +   +         E   + +
Sbjct: 415 EMAAEHGV-DVDEQAFRTLMQAQRDRARADALAKKTGHADTSTYQQLQQALSAENGASVR 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
           F+GY                            ++ V  ++  G     A +   V+VV D
Sbjct: 474 FVGY-----------------------TDTTAATKVVGLLVDGVPAPAATAPADVQVVLD 510

Query: 517 QTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            TPFYAEAGGQL DTG   + DG  +++ DVQ   +G+ VHH  +  G L    +   TI
Sbjct: 511 VTPFYAEAGGQLADTGTISLADGAIVEVDDVQAPIKGLSVHHGRLVDGTLTLGDTGTATI 570

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR ++  H+ATH++H AL   LG   +Q GS   P  LRFD    + + ++ L  I
Sbjct: 571 DTARRRAIARAHTATHMVHKALREELGDTATQAGSENAPSRLRFDFRSGQSVPASSLSQI 630

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ +  +L V  R M  ++A A GA AL G KY + VRVVS+    GG  S  LC 
Sbjct: 631 EGRVNERLQDDLEVTDRTMAIDEARALGAMALFGEKYGNEVRVVSI----GGDWSRELCA 686

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV  +GE+ L+ ++ ESSI +G+RR++A+ G  A  +   +   +  L+  L      
Sbjct: 687 GTHVRRSGELGLVTLLGESSIGSGVRRVDALVGDSAYGYQAKERALVSQLSGLLGARPDE 746

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEV-DSKEL 809
           +  RV  +    R+ +   A  +        +       ++     ++H   EV  + +L
Sbjct: 747 LGERVSSLLTRVRESEKELAALRQAQVLAAASGLAAGAQQVGTALVVAHDAGEVAAADDL 806

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGG 866
           +++   ++ ++     ++V +    K   ++VV  +   R     A  L R ++ VLGGG
Sbjct: 807 RTLALDVRGRLGESSPVVVAVGGVAKGRPVVVVVTNAAAREAGHRAGALVRTASGVLGGG 866

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GG G+  +AQ GG + ++   A+ GV + ++
Sbjct: 867 GG-GKDDVAQGGGTDASRLPDALDGVVAAVR 896


>gi|145616046|ref|XP_361064.2| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15]
 gi|145009817|gb|EDJ94473.1| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15]
          Length = 961

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/970 (32%), Positives = 483/970 (49%), Gaps = 97/970 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPV 57
              ++R TFL +F++ GH ++PSSS++P +DPTL+FTN+GM  FK IF G          
Sbjct: 8   TAETVRKTFLNYFEERGHTVVPSSSVVPHSDPTLLFTNAGMNQFKPIFLGTIGKTDPMAG 67

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI ++W+LLTK 
Sbjct: 68  LKRAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISMSWELLTKV 127

Query: 118 FDLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY+T ++ + E        A  LW + +G+  D I+     DNFW M + GPC
Sbjct: 128 YGLDPARLYVTYFEGNPEMGLEPDLEAKNLWLE-NGVPEDHILPGNMKDNFWEMGDQGPC 186

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WN VF+QF++Q  +    LP   +DTGMG
Sbjct: 187 GPCSEIHYDKVGGRNAAH-LVNMDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ + LQ KT+NY  D+F  L    ++VTG +   +             +RV+ DH+R
Sbjct: 246 FERLVSALQNKTSNYATDVFSPLFARIQEVTGAREYTDKYGKDDADGIDTAYRVVADHIR 305

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338
             +F IADG +P N+GRGYV+RR++RR + YAR     E       +LP L   MG  +P
Sbjct: 306 LMAFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGGFFSQILPTLVEHMGEQFP 365

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL Q +  I+E L  E+E F +TLDRG    +   S   K  +  L+G   ++LYDT G 
Sbjct: 366 ELGQKQQDIKEILDEEEEAFARTLDRGEKQFEKYASMAIKAGENKLSGSDVWRLYDTFGF 425

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P D+ + +   RG+  ID    + A    R +AR  S  +                    
Sbjct: 426 PEDLTKLMAEERGIT-IDEAEVSVA----REKAREASKAVKESVQ--------------T 466

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513
           F   D+ R S+   E +          L   ++S V  I    + ++   E      + +
Sbjct: 467 FAKLDVHRISELENELKVTRTDSEAKYLKGDITSKVYLIYTGKDFLKSSKEIPPKTPLGL 526

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE+GGQ+ DTG  + DG+   ++ D Q+   G  +H+  +E G L    S++
Sbjct: 527 ILDKTNFYAESGGQIADTGRIVIDGVAEFKVLDTQE-FGGYVLHNGYLEYGELTAGDSVI 585

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
              D   R+ +  NH+ TH+L+H+L  +LG  ++Q GS +  + LRFD +H   +T  EL
Sbjct: 586 CEYDELRRQPIRNNHTGTHILNHSLREVLGDDINQKGSLVDNEKLRFDFSHKTGVTVPEL 645

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684
           K IED  N  I QN    T+ ++ + A    G  A+ G  Y + VRVVS+  E       
Sbjct: 646 KKIEDLSNAYIRQNCKTFTKDVDLDLAKQIEGVRAVFGETYPNPVRVVSIGIEVDMLLEN 705

Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------RSH 734
               +    S   CGGTHV  TG +  + IV ES I  GIRRI A TG  A       + 
Sbjct: 706 PKNPEWRKVSVEFCGGTHVDQTGIMKDMIIVEESGIAKGIRRIVAYTGDAAHQVQRLAAD 765

Query: 735 LMGQDEKLKSL------ASFLKVSQGNVVGRV------EEIWEEYRKLQLIHAKRKLQLN 782
              + ++L+SL       + +K +Q ++   V      +E+   + K+Q    + + +  
Sbjct: 766 FSKRIDELESLPFGTEKEAAIKTTQVDLEQLVISSVTKDELRTRFTKIQKAVVEEQKKKQ 825

Query: 783 VEDLSC------------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             +                K     F+  +    ++K +  +M+  + K +   + + G 
Sbjct: 826 KAESKKALDTVAEHFKKPEKAESKVFIGQLPISANAKAVSEIMNFYKSKDKEKSVYVFGG 885

Query: 831 SKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           SKE+ A V  + V T        A   A   ++V+GG  GG  P   Q  G      +QA
Sbjct: 886 SKEEGAVVHGVYVGTALASQGITAEQWANAVSEVIGGKSGGKEPTR-QGQGTKPENLEQA 944

Query: 889 IAGVASFLKK 898
           +A    FL +
Sbjct: 945 VAEAEKFLTE 954


>gi|299115131|emb|CBN75498.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 1122

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/890 (32%), Positives = 432/890 (48%), Gaps = 54/890 (6%)

Query: 3    NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-- 59
            +V+ +R TF++ F+    H   PSS ++P NDP+L+F N+GM  FK +F GQ  P     
Sbjct: 153  SVTKVRQTFIDHFKSKREHTFYPSSPVVPVNDPSLLFANAGMNQFKPVFLGQTDPSSPLA 212

Query: 60   ---AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                    QKC+RAGGKHNDLD+VGR   HHTFFEMLG +SFG YFKE A++  ++ L +
Sbjct: 213  GLKRAVNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGTWSFGDYFKEEAVEWGFEALNE 272

Query: 117  EFDLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
             F L   RLY T +  DEE           LW K+  L  D+++     DNFW M + GP
Sbjct: 273  VFGLPADRLYATYFGGDEELGLAPDLETRDLWLKV--LPEDRVMPGDRKDNFWEMGDVGP 330

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CGPCSE+ FD+           + +    IEIWNLVFMQF +       +LP   +DTG+
Sbjct: 331  CGPCSELHFDRIGG-RNAASLVNMDDPDVIEIWNLVFMQFNRDEAGNLKLLPAKHVDTGL 389

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVIVDHL 279
            GLER+ ++LQ+K +NYD D+F  L  A + VTG   YEG             +RV+ DH 
Sbjct: 390  GLERLVSILQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVGLKDTAYRVVADHA 449

Query: 280  RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
            R+ SF I DG +PAN+GRGYVLRRI+RRA+ Y + +L         ++P +  E G  YP
Sbjct: 450  RALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFGDMYP 509

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGL 396
            EL + +  + E ++ E+E F   L+RG+     V           + GD AF LYD+ G 
Sbjct: 510  ELREKEAFVMEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSNTIPGDTAFFLYDSMGF 569

Query: 397  PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
            PLD+ Q +    G+  +D   F   +  Q++R++       +        +L      ++
Sbjct: 570  PLDLTQVMAEEVGMT-VDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGAD-ETSR 627

Query: 457  FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                 +       K           + L +G +    A    G     +     V ++ D
Sbjct: 628  LAEEGVKPTDDEAKYTWSTTTGNKVVALFDGETLSTTASQSGGTAAASSDDATTVGILLD 687

Query: 517  QTPFYAEAGGQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             TPFY+EAGGQ+ D+G  +       GD   +++ DV+    G  +H   +  G L    
Sbjct: 688  STPFYSEAGGQVSDSGKLVVSAGGEDGDDGVIEVADVR-MFGGFALHVGRLVSGSLSVGD 746

Query: 570  SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            S+   +DY  RR+++ NH+ TH L++AL   +   V Q GS +T + LRFD +H K +T 
Sbjct: 747  SVRCEVDYDRRRKVAPNHTMTHALNYALRKAVDEGVDQKGSLVTDEKLRFDFSHGKALTG 806

Query: 630  AELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEY----- 683
             +L+  E  V  II +   V  +++   +A +  G  A+ G  Y D VRVVSV +     
Sbjct: 807  PQLEESEAIVQRIIQEEKEVYNQVLPLSEAKSIFGLRAVFGEVYPDPVRVVSVGFPVEDM 866

Query: 684  ------EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                  E+    S   CGGTHV +T E     I  E+++  G+RRI AITG  A+  +  
Sbjct: 867  AKDPSREEWATSSVEFCGGTHVGNTREAEAFVITEETAVAKGVRRITAITGSAAKEAVAA 926

Query: 738  QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH-AKRKLQLNVEDLSCHKIADVNF 796
             +           +  G + G V     +     L    K +L+   + L     A+   
Sbjct: 927  GEVLKLRAEEVSSLKGGELEGAVASFRRDVDGATLSAGVKGRLRAQGDKLLKRVAAESKA 986

Query: 797  MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTE 844
             +   ++              ++ ++ ++M V I  + KA   VL  V++
Sbjct: 987  AAAAAAQSGVDAAVKAAKQAVEEGKTWVVMDVAIGADSKAVKRVLDGVSK 1036


>gi|302506663|ref|XP_003015288.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371]
 gi|291178860|gb|EFE34648.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371]
          Length = 954

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/958 (31%), Positives = 471/958 (49%), Gaps = 95/958 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P         +
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNS----DFAQ 78

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             RA     DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY
Sbjct: 79  LKRAHNSQKDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 138

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCSEI +D
Sbjct: 139 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 197

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+ ++LQ
Sbjct: 198 RIGGRNAAH-LVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVSILQ 256

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADG 289
            K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F I DG
Sbjct: 257 NKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAITDG 316

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLI 347
             P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ + +  +
Sbjct: 317 AAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKRKQTDV 376

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+ + + 
Sbjct: 377 MEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDLTRLMA 436

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             R L  ID   F +A    R +A+  S G     ++ +  ++              L  
Sbjct: 437 EERQLT-IDDAEFEEA----RLKAKEASKGQAKTASDLLKLTVHTL---------STLEK 482

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYA 522
           +   K D      K        + + +KAI    E+++      + +++ ++ D+T FYA
Sbjct: 483 NGVPKTDDDAKFGK------GNIVANIKAICHGKEVIDSTKDIPANEQIGIILDKTNFYA 536

Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S++   D   R 
Sbjct: 537 EQGGQEYDTGKIVIDGQAELDVQNVQMY-GGYVLHTGFIKYGNFSVNDSVIAEYDELRRW 595

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ ++L+ IE    D
Sbjct: 596 PIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTD 655

Query: 642 IIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-----------DGGVH 689
            I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E                
Sbjct: 656 YIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPRWEGV 715

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------------- 736
           S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A                  
Sbjct: 716 SIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERLNRFE 775

Query: 737 ------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQLNVE 784
                  +D ++KSL   L     + V + +      +I ++    Q    K +++  ++
Sbjct: 776 KMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVKTAID 835

Query: 785 DLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            +S          + +  +    + K +   ++ ++ K+ SG  + V  +   K +    
Sbjct: 836 AISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKL-SGKALYVFAADASKVAHGCY 894

Query: 842 VTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L+K
Sbjct: 895 VTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYLEK 951


>gi|169603389|ref|XP_001795116.1| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15]
 gi|160706385|gb|EAT88464.2| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15]
          Length = 960

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/975 (31%), Positives = 466/975 (47%), Gaps = 109/975 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
              +R TFL++F+KNGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       
Sbjct: 12  AKKVRQTFLDYFKKNGHSFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFASL 71

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI   W+L+TK +
Sbjct: 72  KRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELMTKVY 131

Query: 119 DLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +D  RLY+T ++  +      EA +LW K +G+  D I+     DNFW M + GPCGPC
Sbjct: 132 GIDPNRLYVTYFEGADGLEPDLEAKELW-KSAGVPEDHILPGDMKDNFWEMGDQGPCGPC 190

Query: 173 SEIFFDQGECIPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SE+ +D  E + G         +++    IEIWN VFMQ+ ++  +    LP   IDTGM
Sbjct: 191 SEVHYDLREPVDGKYRNASDLVNKDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGM 250

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +VLQ+K +NYD D+F  L +  + +TG +                 +RV+ DH 
Sbjct: 251 GFERLVSVLQKKMSNYDTDVFTPLFKRIQDITGARPYNGKFGKEDPDGIDTAYRVVADHT 310

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAY 337
           R  SF IADG +P N GRGYV+RR++RR   YAR   G         ++P L  +MG  +
Sbjct: 311 RMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARNYFGVEIGNFFSKIIPTLVEQMGDMF 370

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395
           PE+ + +  I E L  E++ F K+LDRG  +    ++   K     L GD  ++LYDT+G
Sbjct: 371 PEIKKKQQDIIEILDEEEKAFAKSLDRGETIFKKYVAKAQKAGSNDLPGDDVWRLYDTYG 430

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+ + +    GL   D     + +EE + +AR  S G  +     + F + +     
Sbjct: 431 FPVDLTKLMAEENGLNIND-----KEVEEAQEKAREASKGDKAAAGVVVKFDVHD----- 480

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVE 512
                     +     D               +++ +KAI    + ++   E   G++  
Sbjct: 481 ---------LAALDSMDDVPKTDDSFKYGRENITTTIKAIYHNKKFLKSTSEVPEGEQFG 531

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FYAE GGQ  DTG  + DG   + + +VQ    G  +H   ++ G L+    +
Sbjct: 532 VLLDKTNFYAEQGGQEYDTGRLLIDGEAEISVDNVQ-VYAGYVLHTGYLKYGELKVGSEV 590

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +   D   R  +  NH+ TH+L++AL   LG+ V Q GS + P+ LRFD +H   +T AE
Sbjct: 591 IAEFDELRRNPIRNNHTGTHVLNYALRETLGNEVDQKGSLVAPEKLRFDFSHKAGLTDAE 650

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-------- 682
           LK +ED  +D I QN  V  + +    A    G  A+ G  Y D VRVVSV         
Sbjct: 651 LKKVEDISSDYIRQNAEVYAKDVPLAQAKEIRGLRAVFGETYPDPVRVVSVGVPIEDLLA 710

Query: 683 ---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--- 736
               E     S   CGGTHV  TG+I  L I+ ES I  GIRR EA   QR  +      
Sbjct: 711 DVKNEKWDKLSIEFCGGTHVLKTGDIKELVILEESGIAKGIRRQEAYNVQRIGNEFAERI 770

Query: 737 ----------GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                      ++ + K L   L       + +  +     +I +     Q   AK   +
Sbjct: 771 DLFGKMKFSPEKEAEAKKLQLELNQLSISAIKKTELRDAFAKIQKSILDEQKAFAKADNK 830

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL------QKKIQSGIIMLVGIS-KE 833
             +++++     +         E  S   K++ +A+      +  ++   + L   S +E
Sbjct: 831 RVLDEVTNFFKDESKTFLVKKVEWSSNVNKAISEAIKAISGPKSALKDRSLYLFSASPEE 890

Query: 834 KKASVLIVVTED-LLDRFNAVDLARLSAKVL---------GGGGGGGRPHMAQSGGPNGN 883
            K      V E       +    A     ++                    A   G N +
Sbjct: 891 GKVVHGCYVAEQHKAAGADGPKWASFVTPIIGGKAGGKPGA--------PTAIGQGTNAD 942

Query: 884 KADQAIAGVASFLKK 898
           K D  +A    F+++
Sbjct: 943 KVDDGVAEATKFIEQ 957


>gi|283781582|ref|YP_003372337.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283440035|gb|ADB18477.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 935

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/981 (30%), Positives = 474/981 (48%), Gaps = 138/981 (14%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FFQ  GH    S  L+P  DP+++FT +GM PFK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLAFFQTKGHTRKASDVLVPRWDPSVLFTPAGMNPFKDHFLGKVKLEFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFK+ AI  AW+ LT  K   
Sbjct: 61  TTSQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSE 174
           +    L +TVY +D+EA  +W    GL   +I R+  +DNFW     S    G CGPCSE
Sbjct: 117 IPGDLLTVTVYLDDDEAADIWHNEIGLPTSRIERMGEDDNFWPASSPSKGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLER 232
           I++     +P G         + +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYY----KLPSG---------KTVEIWNLVFTQFNRVGNPPNNLRPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
           +A+V+Q    NY ID+ + +++A+ +V   KY+   +N    R I DH+R+ +F I + +
Sbjct: 224 IASVMQGVDTNYHIDILRPIVEAAAEVCSQKYDPASDNGRRLRRIADHVRACTFAIHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP      YV+RR++RRA+     +G  +P +  L+P +   M S YPEL +    +++ 
Sbjct: 284 LPGPNREKYVIRRLLRRAVLDGHQMGLRDPFLYQLVPIVAEMMKSPYPELGETIERVQKG 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           +++E+  F  T+D GL  + G+   +  +   ++ G  A  LY T+G+P ++++++    
Sbjct: 344 IKAEESAFFGTIDAGLARISGMFDSMKSEGRVMVAGGEAADLYQTNGVPPELVENMAAEL 403

Query: 409 GLAGIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
                D   F  A+EE   R+ +   +   +G  E +  +LKE    TQF+GY+      
Sbjct: 404 NFT-FDWDGFRTAMEEHGERSGKIADVVFKTGPIEALKRALKE----TQFVGYETTET-- 456

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQK--VEVVFDQTPFYAEA 524
                                ++ +K +V    +V+     G +  V VV D++PFY E+
Sbjct: 457 ---------------------TAEIKGVVAAEHLVDTLEEVGHESPVIVVLDKSPFYGES 495

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ+GDTG  +G G + Q+ D QK A+ + +H+  +  G +     +   +D   R  + 
Sbjct: 496 GGQVGDTGEIVGPGFKFQVIDTQKDAD-LLLHYGHLIEGKMNAGAKVTAKVDTVRRNGIR 554

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSATH+L +AL   LG    Q GS +  D LRFD  +  P+ + +L  IE  V+  +A
Sbjct: 555 RAHSATHILQYALQQTLGKETHQMGSKVEEDQLRFDFGNPSPVDAEQLLVIEKEVHARVA 614

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
              PV  + +   +A  +GA  L G KY D  R+VS+     G  S  LC GTH+ +T +
Sbjct: 615 AADPVAWKFVPLTEARTAGAMMLFGEKYPDPARMVSM-----GSFSKELCAGTHLDNTRD 669

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           ++   I++E  + AG RRI A+TG++A+S        L  LA+ L V    V   V  + 
Sbjct: 670 VLAFEIIAEEGVAAGTRRIVALTGEKAKSFSEKTSTALNELANLLGVELLAVPQAVRTLA 729

Query: 765 EEYRKLQLIHA---------------------------KRKLQLNVEDLS---------- 787
           ++ R L+   A                           K  L+     L+          
Sbjct: 730 QQVRDLKKQLASGGKGSTTETSPPRGTVSMAPPSAAQIKAALKETARTLNVGPFDAPARA 789

Query: 788 CHKIADVNFMSHIISE------VDSKELKSVMDALQK----------------------- 818
              + +V  ++  I+E      + +  L      +                         
Sbjct: 790 AAMLEEVTTLTKQIAERATTSTLSADSLIESATLIGDVKVIVSDAPGSNANILRQLIDQI 849

Query: 819 -KIQSGIIMLVGISK-EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
            K  S + +L   ++ + K  V+  V+++L+D+  +A +  +  + V+GGGGG GRP +A
Sbjct: 850 RKKTSPVAILFAAAEADDKVVVVAGVSKELVDKGVSAGNWVKEVSPVVGGGGG-GRPDLA 908

Query: 876 QSGGPNGNKADQAIAGVASFL 896
           Q+GG        A+      +
Sbjct: 909 QAGGKIPAMIPDALKKALEVI 929


>gi|187735876|ref|YP_001877988.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|205829974|sp|B2UKT4|SYA_AKKM8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|187425928|gb|ACD05207.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 942

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/950 (32%), Positives = 454/950 (47%), Gaps = 137/950 (14%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           M   + IR +FL+FF++  H ++PS+SL+P   P L+FTN+GM  F   F G   P +  
Sbjct: 1   MMTATEIRQSFLDFFREKQHTVVPSASLMPQ-SPGLLFTNAGMNQFVPYFLGVWTPPWTP 59

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDL++VG  + HHTFFEMLGN+SFG YFK  AI+ AW+L+ + +
Sbjct: 60  ARATDTQKCIRAGGKHNDLEDVGYDSYHHTFFEMLGNWSFGDYFKREAIRWAWELVVERW 119

Query: 119 DLDQRRLYITVYDEDE----------EAFKLWKKIS---GLSAD-KIIRITTNDNFWSMA 164
                RLY TVY  D+          EA+  W ++    GL  D  I+     DNFW M 
Sbjct: 120 GFPAERLYATVYAPDKSKGDPGEFDREAWDFWAELFRSRGLDPDVHIVHGNVKDNFWMMG 179

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+  D            +++ ++ IEIWNLVF+Q+  ++      LP   +
Sbjct: 180 ETGPCGPCSELHVDLTPEGNTKGSLVNKDSDQCIEIWNLVFIQYNAESDGSMRNLPACHV 239

Query: 225 DTGMGLERMATVLQ---------EKTNNYDIDLFKHLIQASEQVTGMKYEG--------- 266
           DTGMG ER  +++Q          K +NY  D+F+ L    E ++G KY           
Sbjct: 240 DTGMGFERACSIMQCTNGFKDFSRKPSNYATDVFRPLFDRLEVLSGRKYADVYPAPGSKR 299

Query: 267 --------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
                      +  RVI DHLR+ SF IADGILP N GR YVLRRI+RRA+ Y R LG+T
Sbjct: 300 VDAEDGTLQEAIAFRVIADHLRTLSFSIADGILPGNNGRNYVLRRILRRAVRYGRRLGFT 359

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           +P +  L+  L    G  +PEL      ++E L  E+  F +TLDRGL L D   +  GK
Sbjct: 360 QPFLAELVDTLVESFGQVFPELAARATTVKEVLNREEASFNETLDRGLELFDAETASAGK 419

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
              ++G+ AFKLYDT+G P+D+   +   RGL  ID+  FN+ +EEQR RARA       
Sbjct: 420 ---VSGEFAFKLYDTYGFPIDLTALLAEERGL-DIDMERFNRLMEEQRERARAARKSEVV 475

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
              +       +    T+F GYD+   +                                
Sbjct: 476 RALD------LKTDAVTEFTGYDVDECAAT------------------------------ 499

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             ++E +  G  + ++ D+TPFYAE GGQ+ D G     G    +  VQ +      H  
Sbjct: 500 --VLEVSRQGDSLFIITDKTPFYAEMGGQVSDAGLIEIGGESYHVMAVQ-QIGNARAHVV 556

Query: 559 IVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
               G  ++    + L+ID + RR++  +H+ATHLLH AL  ++    +Q GS ++ D L
Sbjct: 557 EARPGLEVKPGDRVHLSIDAERRRRIEAHHTATHLLHCALHQVVSPDAAQQGSFVSEDRL 616

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-LLGTKYNDRV 676
           RFD   S  ++  +L+ IE+ VN  I ++LPV        D   + A A   G KY D V
Sbjct: 617 RFDFN-SSAVSPDQLRLIEEKVNGWIEESLPVHCTERAYADVKGNAAIAQFFGDKYGDVV 675

Query: 677 RVVSVEYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS- 733
           RVV V     G+   S   CGGTH+++T  I L  I SE +I +G+RRIEA+TG  A   
Sbjct: 676 RVVQVGGCRDGLDGVSMEFCGGTHIANTKNIGLFKIKSEGAIASGVRRIEAMTGDAALEM 735

Query: 734 ----------HLMGQDEKLKSL---------------------------ASFLKVSQGNV 756
                      +    EK+K +                           AS ++    ++
Sbjct: 736 IRQHVVAKSLEIAKAVEKIKEVNYELADMGLEQVPVPTIEGKPGLTALGASDIRTVNDSL 795

Query: 757 V---GRVEEI----WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                 VE       +  +KL+   A +        L+       + +  +      + L
Sbjct: 796 ARFDASVEHFKQTALDAEKKLKKARAGQSAAKADALLNEWLSDAPSSLIQVAEGA-GELL 854

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           + +++ L+K+  +G   L+ +             + + D  +A D+ R  
Sbjct: 855 QELLNGLKKRQYAGAAFLLCVDSSSLLLGAYCGKDAIADGLSAGDMIREV 904


>gi|316967113|gb|EFV51596.1| putative alanine--tRNA ligase [Trichinella spiralis]
          Length = 962

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/973 (29%), Positives = 458/973 (47%), Gaps = 96/973 (9%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           +   ++IR TF+ +F +K  H+ + SSS+IP  DP+L+FTN+GM  FK IF G   P   
Sbjct: 4   LLTANAIRQTFINYFTEKRNHQYVHSSSVIPKGDPSLLFTNAGMNQFKPIFLGTADPNSQ 63

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
              ++ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++L
Sbjct: 64  MASWKRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKDICAWAWEVL 123

Query: 115 TKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           TKEF + + +LY+T +   E        E  ++W  + GL +++++     DNFW M + 
Sbjct: 124 TKEFKIPKEQLYVTYFGGSEKCRLQPDVECRQIWLDM-GLPSERVLPFGMKDNFWEMGDI 182

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI +D+           +++    +EIWNLVF+ + +        LPK  ID 
Sbjct: 183 GPCGPCSEIHYDRI-GNRNAANLINKDDPDVLEIWNLVFITYNRDKDGSLHPLPKRHIDC 241

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVD 277
           G+G ER+ +V+Q K +NYD DLF  +     +   ++               + +RV+ D
Sbjct: 242 GLGFERLVSVIQGKKSNYDTDLFVPIFNRIAETAKVRPYMGKVGEEDEQQIDMAYRVVAD 301

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM--- 333
           H+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L        +L+P +   +   
Sbjct: 302 HIRTLTVALSDGGRPDNCGRGYVLRRILRRGVRYATEKLNAPSGFFANLVPVVVETLVED 361

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G  +PEL +    + E +  E+  F KTL RG  +L   +    KD+++ G VA++LY +
Sbjct: 362 GETFPELKEDPNSVMEIINEEESLFLKTLSRGSRVLRQEIEKASKDKLIPGVVAWRLYAS 421

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +G P+D+ Q +    G   +++  +    EE R +A+  S    S   + + F++     
Sbjct: 422 YGFPVDLTQLMAEESGYK-VNMEEY----EECRQQAQMSSSSKFSQLNDVVDFNI---NA 473

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
               +   +       K   ++          + V   V A+ + GE V E  SG    +
Sbjct: 474 VNYLLNGKVPLTDDKPKYAYRLTENGDDDYEFDEVKCEVLALRKNGEFVSEVCSGDSCCL 533

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           + D+T FYAE+GGQ+ D G   GD    ++ +VQ +  G  VH   V  G +     L  
Sbjct: 534 ICDKTAFYAESGGQIYDEGSMEGDKSEFRVRNVQAR-GGYIVHFGEVM-GTITRGSKLFQ 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D + R Q+  NH+ATHLL+ AL  +LG  V Q GS +  D LRFD T   P+T  +L 
Sbjct: 592 NVDQKRRVQVMKNHTATHLLNFALREVLG-QVEQKGSLVLTDRLRFDFTCKAPLTVEQLM 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
            IE  V +I+  ++ +  + +    A   +G  +     Y D VRVVSV           
Sbjct: 651 KIEQIVANIVNSDVEIYMQEVPLGVAKTIAGLRSTADETYPDPVRVVSVGTPVDALLKDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                 + S   CGGTH+  TG +    I SE ++  GIRRI A+T   A   +   +  
Sbjct: 711 DGPGAKLASVEFCGGTHLLRTGHLGDFVIASEEAVARGIRRIVALTCHEAEQAVQKLEYF 770

Query: 742 LKSLASFLKVSQGNVVG----------RVEEIWE------EYRKLQL-----IHAKRKLQ 780
           +  +   + + + +V+           ++    E      E +  Q+      H  RKL 
Sbjct: 771 VNKVEEVIDLIRSSVLSGELDYSFLNRKISGCLEVGWLCVEMKASQIPAWRREHLVRKLA 830

Query: 781 LNVEDLSCHKIAD-VNFM---------------SHIISEVDSKELKSVMDALQKKIQSGI 824
                L   +  + + F+                 ++ E         +D   K+++   
Sbjct: 831 QVKATLDDFEKGERMKFVQMITDEAKNLQIPDDGIVVHEFPPNATAKALDTALKQLKCRA 890

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
            ++   S++ K   +  V + L  +             + GG GGG+   AQ+    G  
Sbjct: 891 GIVF--SQDSKNKRVECVDKGLTAKA----WVDRLC-CVAGGYGGGKETTAQASLGTGLP 943

Query: 885 ADQAIAGVASFLK 897
            D+       F K
Sbjct: 944 VDKIKTEAEKFAK 956


>gi|239980567|ref|ZP_04703091.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291452426|ref|ZP_06591816.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291355375|gb|EFE82277.1| alanyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 740

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/774 (37%), Positives = 419/774 (54%), Gaps = 51/774 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR+ FL+ F   GH  +PS+ L P  DPTL+F N+GMVPFK   TG+    +   
Sbjct: 1   MRTADIRSRFLDHFTARGHTPVPSAPL-PTPDPTLLFVNAGMVPFKPYLTGEVPAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T+VQKCVR      D++ VGRT RH +FF+M GNFSFG YFKE AI LAW+L T      
Sbjct: 60  TSVQKCVRT----LDIEEVGRTTRHGSFFQMAGNFSFGDYFKEEAIALAWELSTTPVADG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  R+++TV+  D EA  LW++ +GL   +I+     DNFWSM   GPCGP SE++
Sbjct: 116 GYGLDPARIWVTVHHTDTEARALWRRTAGLPDARIVDRGDEDNFWSMGVPGPCGPSSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------RFILPKMSIDTGMGL 230
           +D+G    G   G + + +R++E WNLVFMQ E+              LP  +IDTG+GL
Sbjct: 176 YDRGPAF-GPEGGPAVDEDRFMEFWNLVFMQDERGEGHGKSGYPILGELPHRNIDTGLGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD 288
           ERMAT+LQ+K N Y+ID  + ++ A+ ++TG +Y  +    V  RV+ DH+R++  L+AD
Sbjct: 235 ERMATLLQDKPNLYEIDETRPVLDAAAELTGTRYGSDAAADVRLRVVADHVRTALMLLAD 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P NEGRGYVLRR++RRA+   R LGY +P +  LLP     M   YPE+ ++   I 
Sbjct: 295 GVSPTNEGRGYVLRRMLRRAVRSVRQLGYPDPALPALLPVARDLMACGYPEVAESFPRIA 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           E   +E+E F  TL +G  +LD  ++         L G  AF+L+DT+G P+D+  ++  
Sbjct: 355 EQAYAEEEAFRATLQQGTTVLDTAVAKVRAEGGTALPGAQAFQLHDTYGFPIDLTLEMAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK--IWFSLKEKYGATQFIGYDLLR 464
            +G+  +D   F   +E+QR RARA +    SG T       ++ +  G T+++ ++ L 
Sbjct: 415 EQGVE-VDRAGFTALMEDQRERARADARARKSGGTGDTSALRAVLDASGPTEWLAWEKL- 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                    + V+A++     +  A +GQ   VV D+TPFYAE+
Sbjct: 473 ----------------------TTRATVRAVLGAEGPLPVATAGQLATVVLDRTPFYAES 510

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D G   G  +  ++ DVQ+   G+ VH   V  G L     +  T+D + R    
Sbjct: 511 GGQAADAGHLTGASVEAEVVDVQRPLPGLVVHRVRVLAGELAPGDEVEATVDPEWRLGAR 570

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS TH+LH AL  +LG    Q+GS   P  LR D      +T A    +E+  N  + 
Sbjct: 571 QAHSGTHVLHAALRQVLGPAALQSGSYNRPGHLRLDFPWRGALTPAARSEVEEAANQALR 630

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++LPV  R M   +A   GA AL    Y + VRVV +    GG  S  LCGGTHV+ T +
Sbjct: 631 RDLPVGVRWMPLAEARELGALALFDETYGEEVRVVEI----GGPWSRELCGGTHVAHTSQ 686

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           I ++ +  E+S+ AG+RR+EA  G     +L  + +    LA  L   +  +  
Sbjct: 687 IGVIALTGEASVGAGMRRLEAAVGIEGFGYLARERDLAAQLAQQLGAPRAELPE 740


>gi|327538393|gb|EGF25065.1| alanyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 945

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/979 (30%), Positives = 459/979 (46%), Gaps = 127/979 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FF+  G    PS  L+P  DP+++FT +GM  FK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFKE AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSE 174
           +   RL +TVY +D+EAF +W    GL   +I R+  ++NFW          G CGPCSE
Sbjct: 117 IPGERLTVTVYKDDDEAFGIWHDKIGLPTQRITRMDEDENFWPASAPSEGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFILPKMSIDTGMGLER 232
           I++               E    +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYYQL-------------EDGSDVEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            A+VLQ    N+ ID    +++A+ +V G+KYE   +N    R I DH R+S F + + +
Sbjct: 224 TASVLQGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P  +    V+RR++RRA+     +   EP +  L+ A+     +AYPEL Q    + E 
Sbjct: 284 YPGPKDARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEA 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++ F  T+D G+  +  +   +  +   ++ G  A  L  T+G+P +++Q +   +
Sbjct: 344 IESEEKAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQ 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
                D   F +A+++    A     G           +LKE    T F+GY+    +  
Sbjct: 404 NFT-FDWSGFREAMDKH---ADESDGGQRVLFQTGPLETLKEALRETPFVGYEQTEATAV 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +K                    ++  + + G+ V        + VV D +PFY E+GGQ+
Sbjct: 460 VK-----GIITGDGKGKGDDGQLLSHLDRPGDAV--------LRVVLDHSPFYGESGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    D    ++ D Q+ A  + VHH  + RG +    +     D +NR  L+  HS
Sbjct: 507 GDIGVISNDNFEFEVIDTQRHAS-LIVHHGRLIRGKINEGETCTAKFDVENRTALARAHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LHHAL T +G H  Q GS + PD LRFD T+ K I    L  IE +V  ++++   
Sbjct: 566 ATHILHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLSMVSKGDE 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +    ++  DA  +GA  L G KY D  R+VS+     G  S  LCGGTH+++T ++   
Sbjct: 626 IRWDTVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSF 680

Query: 709 YIVSESSIRAG-----------------------------------------------IR 721
            +V E S+  G                                               +R
Sbjct: 681 EVVVEESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVR 740

Query: 722 RI--EAITGQRA-------------------RSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           R+  E  +G+ A                    S        ++ L   L V+  +V+ R+
Sbjct: 741 RLKKELSSGKAADYPAEFVFDAKAAKAETTDISDYNAVRAAVRGLTRRLNVAITDVLSRL 800

Query: 761 EEIWEEYRKL--QLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDAL 816
           + +  +  KL  QL       +++ +DL     K+ D   +       +   ++  +D +
Sbjct: 801 DSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLIVAETPGANPNIMRGWIDQI 860

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +KK  +   +L+  +   K  ++  ++ DL+DR   A D    +AKV+ GG GGGRP MA
Sbjct: 861 RKKSDTPTAVLLASAMNDKVMLVGGLSRDLVDRGLKAGDWVGAAAKVV-GGSGGGRPDMA 919

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q+GG + +K  +A+     
Sbjct: 920 QAGGKDASKLPEALQQARE 938


>gi|146086823|ref|XP_001465654.1| alanyl-tRNA synthetase [Leishmania infantum JPCM5]
 gi|134069753|emb|CAM68079.1| putative alanyl-tRNA synthetase [Leishmania infantum JPCM5]
 gi|322499108|emb|CBZ34180.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 962

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/962 (29%), Positives = 467/962 (48%), Gaps = 118/962 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           VS +R  F+++F+K GH  +PSS + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ DE        EA +LW +   L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDENNGLDPDLEAKELWGQF--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  IDTGMGL
Sbjct: 186 PCSEVHFDRIGG-RNAASLVNKDDPMVVEIWNLVFMQFERRAGGSLTPLPQKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLRS 281
           ER+ ++LQ   +NYD D +  L +A +  TG            + + +V +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++CT +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364

Query: 341 IQ--AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
            +      I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D +G 
Sbjct: 365 KEPRNIQRIKTVLADEEQSFAKTWEMGLKHFNHAVNECRANNSKVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  ++E    ++  +  + +  T    + L+E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEMKE----SKVSAGRVAATKTFIDAYQLEE------ 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                 L+     + D           +    +  + AI   +  + +     G     +
Sbjct: 474 ------LKTRGIPQTDDAAKY------VWEDSTGDLLAIFDKKNSKFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI---LR 566
            V ++   T FYAE+GGQ+ DTG  +     +          G  VH   + +     + 
Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKVYNVAGYVVHVGNLSKDSASSIP 581

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS------HVSQNGSCITPDGLRFD 620
           +   + L +DY+ R  ++ NH+ TH L+  L  +LG        V Q GS +T + LRFD
Sbjct: 582 SSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
            +++  +++ +L  +E  +N+ I   LPV    +  E A   +G   + G KY D V V+
Sbjct: 642 FSYNTKLSNEDLVRVERLLNEKIQAGLPVYREEVPLEAASKINGLRHMFGEKYPDPVSVI 701

Query: 680 SV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+           E E+   ++   CGGTH+ +  E     I+SE ++  G+RR+   T 
Sbjct: 702 SIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATK 761

Query: 729 QRARSHLM-------GQDEKLKSLASFLKVSQGNVVGRVEE-------IWEEYR------ 768
             A   +          DE +K  A+   V   +V+ +          +  E R      
Sbjct: 762 SEADKVIKAGAVLKGQYDELMKKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDAA 821

Query: 769 --------KLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKE--LKSVMDALQ 817
                   K Q   A+ K     + L   +  A   F+ H ++E  ++   L++  D   
Sbjct: 822 IKRMNATLKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFT 881

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +   + + +  S ++KA  ++ +    ++ + +AV  A+ S      G GGG+P+ AQ
Sbjct: 882 STVSGPVGVFLIGSDDEKALAIVSMPAAFVERKMSAVAWAKSSI-----GKGGGKPNAAQ 936

Query: 877 SG 878
           SG
Sbjct: 937 SG 938


>gi|182415646|ref|YP_001820712.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|205830166|sp|B1ZZ40|SYA_OPITP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|177842860|gb|ACB77112.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 937

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/972 (31%), Positives = 456/972 (46%), Gaps = 126/972 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
              + IR +FL+FF + GH ++PSSSL+P + P L+FTN+GM  F  IF G   P     
Sbjct: 1   MTSAEIRQSFLDFFARQGHTIVPSSSLLP-DSPGLLFTNAGMNQFVPIFLGDRAPDVSKW 59

Query: 57  ------VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
                         QKC+RAGGKHNDL++VG    HHT FEMLGN+SFG YFK+ +I   
Sbjct: 60  AGARPAKDTRAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWG 119

Query: 111 WDLLTKEFDLDQRRLYITVYDED----------EEAFKLW----KKISGLSADKIIRITT 156
           W+L+TK + +  +RL+ TVY  D          +EA+ +W    KK     A  I+    
Sbjct: 120 WELITKVWGIPAKRLFATVYSPDKSKNDPSDFDQEAYDIWAGVFKKEGLDPAVHIVHGNK 179

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
            DNFW M +TGPCGPCSEI F+         G    +    R IEIWN VF+QF      
Sbjct: 180 KDNFWMMGDTGPCGPCSEIHFNLLPSDDEVEGRKLVNAGVPRCIEIWNHVFIQFNANADG 239

Query: 215 ERFILPKMSIDTGMGLERMATV---------LQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
               L    +DTGMG ER+A +              +NY+ D+F  L    E+++   Y 
Sbjct: 240 TFSPLAAKHVDTGMGFERVAGIYATTKGFKDFSRDPSNYNADVFAPLFAKIEELSKKTYN 299

Query: 266 G-------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           G             N  +  RV+ DH R  S  IAD ILP NEGR YV+RRI+RR + Y 
Sbjct: 300 GTVPTRREGLGEQENIDIAFRVLADHARCVSCAIADNILPGNEGRNYVIRRILRRGILYG 359

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + L         L+  +   +G+ +PEL + + +I   +RSE+E FG+TL++GL L +  
Sbjct: 360 KKLNLATGFFEQLVAPVVESLGAVFPELKERQDIIRRVIRSEEESFGRTLEKGLQLFNEG 419

Query: 373 LSHL----------------------GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410
              L                      G    L G   F+LYDT+G P+D+ Q +   RGL
Sbjct: 420 AKLLLDAHPIKGQADVPGVGTITNIGGVTRFLGGKFVFRLYDTYGFPVDMTQLLATERGL 479

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           A ++++ F   +++Q+ R+RA                  E    T+FIGYD L       
Sbjct: 480 A-VNMVEFASEMQQQQDRSRAAQKK--EVIVAATEGDNTEAAQPTKFIGYDRLTA----- 531

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                        ++++   + + + +VFDQTPFYAE GGQ GD
Sbjct: 532 ---------------------------DAQVLDVVKTDKDLFLVFDQTPFYAEMGGQTGD 564

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHH-----AIVERGILRTEMSLVLTIDYQNRRQLSI 585
            G    DG    I    K   G F+H      A     +        L +    RR +S 
Sbjct: 565 HGVVKIDGQTFAILATVKDKAGRFLHKLAPACAADVARLNPVGKKAALGVSPLARRAISR 624

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           +HSA HL+H AL   LG+HV Q G+  T + +RFD TH + +T  ++  +E  VN  I  
Sbjct: 625 HHSAEHLVHWALRKTLGTHVRQAGTSKTKERMRFDFTHFEALTPEQIAEVERLVNSKILS 684

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N  V       +     G  A  G KY   VRVV +     G +S  LCGGTHVS+T EI
Sbjct: 685 NDKVEAYETEFDK-KPEGTLAFFGEKYGKIVRVVDI-----GGYSRELCGGTHVSTTSEI 738

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  IV+E +I AG RR+EA+ GQ A   +   +  LK++   L     +V  +++ +  
Sbjct: 739 GLFKIVAEMAIAAGTRRLEAVAGQAAYDFVEEHETALKAVTHKLNAGPQDVAQKLDSLLA 798

Query: 766 EYRKLQLIHA--KRKLQLNVEDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKI 820
             ++L+      ++K    + D    K      + F++  +S  +   L+S+   +  K+
Sbjct: 799 HQKELEKKLKAYEQKAAAGLADELAAKATARDGLKFVTATVSIDNQDALRSLGSQVLHKL 858

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFN-AVDLARLSAKVLGGGGGGGRPHMAQSGG 879
             G++ L G +   +AS+++  +   +   + A  +    +  +GG GG G+P  A  GG
Sbjct: 859 GEGVVTL-GAALGDRASLVVYCSPAAIKAGHQAGKIVGELSTKIGGKGG-GKPDFAMGGG 916

Query: 880 PNGNKADQAIAG 891
            + +K    +  
Sbjct: 917 KDPSKLADVLKQ 928


>gi|322491846|emb|CBZ27119.1| putative alanyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 962

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/981 (29%), Positives = 472/981 (48%), Gaps = 123/981 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ D+        EA +LW +   L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDKNNGLNPDLEAKELWAQF--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  IDTGMGL
Sbjct: 186 PCSEVHFDRIGGRNAASF-VNKDDPMVVEIWNLVFMQFERRADGFLTPLPQKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLRS 281
           ER+ ++LQ   +NYD D +  L +A +  TG            + + +V +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNNPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++CT +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364

Query: 341 IQ--AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
            +      I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D +G 
Sbjct: 365 KEPRNIQRIKAVLADEEQSFAKTWEMGLRHFNHAVNECRANNSKVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  ++E    ++  +  + +  T    + L+E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNAEMKE----SKVSAGRVAATKTFIDAYQLEE------ 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                 L+     + D           +    +  V AI   +  + +     G     +
Sbjct: 474 ------LKTRGIPQTDDVAKY------VWEDSTGDVLAIFDKKNSKFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERG---IL 565
            V ++ + T FYAE+GGQ+ DTG  + G     ++  V     G  VH   + +     +
Sbjct: 522 GVGIILNTTNFYAESGGQVYDTGRLVAGSDSVFEVKKV-YNVAGYVVHVGSLSKDSASPI 580

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS------HVSQNGSCITPDGLRF 619
                + + +DY+ R  ++ NH+ TH L+  L  +LG        V Q GS +T + LRF
Sbjct: 581 PLSAVVQMQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRF 640

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678
           D ++S  +++ EL  +E  +N+ I   LPV    +  E A   +G   + G KY D V V
Sbjct: 641 DFSYSTKLSNEELVRVEQLLNEKIQAGLPVYREEVPLEAASKINGLRQMFGEKYPDPVSV 700

Query: 679 VSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           +S+           E E+   ++   CGGTH+ +  E     I+SE ++  G+RR+   T
Sbjct: 701 ISIGTPINEMLTNPEKEEWRDYAVEFCGGTHLKNLKEADKAVIISEEALMKGVRRVVVAT 760

Query: 728 GQRARSHLM-------GQDEKLKSLASFLKVSQGNVVGRVEE-------IWEEYR----- 768
              A   +          DE ++  A+   V   +V+ +          +  E R     
Sbjct: 761 KSEADKVIKAGTELKGQYDELMQKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDA 820

Query: 769 ---------KLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKE--LKSVMDAL 816
                    K Q   A+ K     + L   +  A   F+ H ++E  ++   L++  D  
Sbjct: 821 AIKRMNAILKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGF 880

Query: 817 QKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
              +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P  A
Sbjct: 881 SSTVSGPVGVFLIGSDDEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPSAA 935

Query: 876 QSG--GPNGNKAD-QAIAGVA 893
           QSG    +   A  +A+    
Sbjct: 936 QSGLPAKDVAAAATKAMEEAE 956


>gi|296420542|ref|XP_002839828.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636034|emb|CAZ84019.1| unnamed protein product [Tuber melanosporum]
          Length = 959

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/975 (29%), Positives = 466/975 (47%), Gaps = 116/975 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TF+++F+ NGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 15  VRKTFIDYFKNNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPSSDFASLKRA 74

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ + LD
Sbjct: 75  ANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTEIYGLD 134

Query: 122 QRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ ++E          +LW+ + G++ + I+     DNFW M + GPCGPCS
Sbjct: 135 PDRLYVTYFEGNKERGLEPDLETQELWRAV-GVADNHILPGNMKDNFWEMGDQGPCGPCS 193

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+ +D            + +    IEIWN VF+Q+ ++       LP   +DTGMG ER+
Sbjct: 194 EVHYDHIGGRNASH-LVNMDDPNVIEIWNNVFIQYNREPDHSLRSLPNKHVDTGMGFERL 252

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            +VLQ+K++NYD D+F  L Q  +++T  +  G              +RVI DH+R+ +F
Sbjct: 253 VSVLQDKSSNYDTDVFSPLFQKIQEITKARPYGGKFGAEDVDGIDTAYRVIADHVRTLTF 312

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYT--EPLMMHLLPALCTEMGSAYPELIQ 342
            IADG +P NEGRGYV+RR++RR   YAR             ++P L  ++G  +PE+ +
Sbjct: 313 AIADGGVPNNEGRGYVVRRVLRRGARYARRYFQAPIGEFFSKIVPTLVLQLGDVFPEIKK 372

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDI 400
            +  ++E L  E+E F +TLDRG  + D       +   ++L G   ++LYDT G P+D+
Sbjct: 373 KESDVKEILNEEEESFSRTLDRGERMFDVFSKRATEHNSKVLKGSDVWRLYDTFGFPVDL 432

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +    GL  I+   F +A  E +  ++A                     G  + +  
Sbjct: 433 TRIMAEENGLE-INEEEFERAKAESKEASKARKSS-----------------GDVELLKL 474

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE---VVFDQ 517
            +    +  +                 ++  + AI           +  +     ++ D+
Sbjct: 475 GVHDLGRLEQMAEVPKTDDVYKFGRGNITGHIMAIYCDKSFRSSTANISRYTQLGLILDK 534

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G L     ++   D
Sbjct: 535 TNFYAEQGGQEYDTGKILIDGEAELDVQNVQ-VYGGYVLHTGYIKYGTLSVGDDVICEYD 593

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L++AL  +LG  + Q GS +  + LRFD +H   +T AEL+ IE
Sbjct: 594 ELRRWPIRNNHTGTHVLNYALREVLGDGIEQKGSLVAAEKLRFDFSHKCGVTDAELEMIE 653

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YE 684
               + I QNL V +  +    A    G  A+ G  Y D VRVVSV             +
Sbjct: 654 KISTEYIRQNLEVYSEDVPLSIAREIEGVRAVFGETYPDPVRVVSVGVPIEELTRDVKNK 713

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                S   CGGTHV  T +I  L I+ E+ I  GIRRI A+TG  A             
Sbjct: 714 QWRKVSIEFCGGTHVQKTDDIKDLIILEENGIAKGIRRIVAVTGNDAGKVQKIASQFEER 773

Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHA 775
                       ++ ++KS+ + L     + V +V          +++ ++ +  Q    
Sbjct: 774 INALGKLPAGPRKEAEIKSVQADLNSLVISAVKKVQLKDKFGKIHKQLLDDQKAKQKAEL 833

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-- 833
           K+ +++  E           F+S +    +SK L   +  +Q K +   + L     +  
Sbjct: 834 KKAVEIVTEHFK-QNPDSPYFVSKLPISANSKALSDAIKHVQTKAKDKTVYLFATDDDAE 892

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLG----------GGGGGGRPHMAQSGGPNGN 883
            K      V E++  + +A DLA   ++++G                     Q  G   +
Sbjct: 893 GKVIHGCYVAENVGKQLSAKDLADSISQIVGGKAGGKGATS-----------QGIGNKVD 941

Query: 884 KADQAIAGVASFLKK 898
           K  +A+   A  L++
Sbjct: 942 KVGEAVDAAAKALQQ 956


>gi|289810694|ref|ZP_06541323.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 603

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/637 (47%), Positives = 409/637 (64%), Gaps = 44/637 (6%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGG 72
           +F    GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   TT Q+CVRAGG
Sbjct: 1   DFSYSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGG 60

Query: 73  KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVY 130
           KHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F L + RL++TVY
Sbjct: 61  KHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVY 120

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECI 183
           + D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I
Sbjct: 121 ETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHI 180

Query: 184 PGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +
Sbjct: 181 WGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNS 240

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+LP+NE RGYVLR
Sbjct: 241 NYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVLPSNENRGYVLR 298

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           RI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L++E+E+F +TL
Sbjct: 299 RIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTL 358

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           +RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+
Sbjct: 359 ERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAM 416

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
           EEQR RAR  S G G+     I         A++F GYD L                   
Sbjct: 417 EEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------------------ 452

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                ++  V A+   G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    
Sbjct: 453 -----LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFA 507

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           + D QK  + I  H   +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG
Sbjct: 508 VDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLG 566

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           +HV+Q GS ++   LRFD +H++ +  +E++ +ED V
Sbjct: 567 THVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLV 603


>gi|157869507|ref|XP_001683305.1| alanyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|68224189|emb|CAJ04856.1| putative alanyl-tRNA synthetase [Leishmania major strain Friedlin]
          Length = 962

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/962 (29%), Positives = 466/962 (48%), Gaps = 118/962 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           VS +R  F+++F+K GH  +PSS + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++ DE        EA +LW ++  L   +I+     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDESNGLDPDLEAKELWGQL--LPESQIVPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           +++    +EIWNLVFMQFE++       LP+  IDTGMGL
Sbjct: 186 PCSEVHFDRIGR-RNAASLVNKDDPMVVEIWNLVFMQFERRAGGFLTPLPQKHIDTGMGL 244

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDHLRS 281
           ER+ ++LQ   +NYD D +  L +A +  TG            + + +V +RV+ DH+R 
Sbjct: 245 ERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIRC 304

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++CT +G  +P L
Sbjct: 305 LTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPHL 364

Query: 341 IQ--AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGL 396
            +      I+  L  E++ F KT + GL   +  ++       ++++G  AF L+D +G 
Sbjct: 365 KEPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAVNECRANSSKVISGSEAFVLHDRYGF 424

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+   +    G+  +D+  FN  ++E    ++  +  + +  T    + L+E      
Sbjct: 425 PVDLTCLLAEKDGMT-VDLEGFNTEMKE----SKVSAGRVAATKTFIDAYQLEE------ 473

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG-----Q 509
                       +K             +    +  V AI   +  + +     G     +
Sbjct: 474 ------------LKTRGIPQTNDAAKYVWEDYTGDVLAIFDKKNSKFISLLEPGNDLGAE 521

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER---GILR 566
            V ++   T FYAE+GGQ+ DTG  +     +          G  VH   + +     + 
Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKAYNVAGYVVHVGNLSKYSASPIP 581

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS------HVSQNGSCITPDGLRFD 620
           +   + L +DY+ R  ++ NH+ TH L+  L  +LG        V Q GS +T + LRFD
Sbjct: 582 SSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFD 641

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
            +++  +++ +L  +E  +N+ I   L V    +  E A   +G   + G KY D V V+
Sbjct: 642 FSYNTKLSNEDLVRVEQLLNEKIQAGLLVYREEVPLEAASKINGLRQMFGEKYPDPVSVI 701

Query: 680 SV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           S+           E E+   ++   CGGTH+ +  E     I+SE ++  G+RR+   T 
Sbjct: 702 SIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATR 761

Query: 729 QRARSHL-------MGQDEKLKSLASFLKVSQGNVVGR-VEE------IWEEYRK----- 769
             A   +          DE +K  A+   V   +V+ + V +      +  E R+     
Sbjct: 762 LEADKVIKAGAELKRQYDELMKKEATATSVKALSVLNKNVGDSCIPLVLKNEMRENIDAA 821

Query: 770 LQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKE--LKSVMDALQ 817
           ++ ++A  K Q         +               F+ H ++E  ++   L++  D   
Sbjct: 822 IKRMNATLKSQAAEARDKAAEAGKCLGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFS 881

Query: 818 KKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +   + + L+G   EK  +++ +    +  + +AV  A+ S      G GGG+P+ AQ
Sbjct: 882 STVSGPVGVFLIGSDNEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPNAAQ 936

Query: 877 SG 878
           SG
Sbjct: 937 SG 938


>gi|32475431|ref|NP_868425.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|41018176|sp|Q7UFH9|SYA_RHOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|32445972|emb|CAD78703.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 945

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/979 (30%), Positives = 458/979 (46%), Gaps = 127/979 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  +L FF+  G    PS  L+P  DP+++FT +GM  FK+ F G+ K  +   
Sbjct: 1   MKTDELREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKC+R G    D+DNVGRT  HHTFFEMLGNFSFG YFKE AI  AW+ LT  K   
Sbjct: 61  TTCQKCLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGPCSE 174
           +   RL +TVY +D+EAF +W    GL   +I R+  ++NFW          G CGPCSE
Sbjct: 117 IPGERLTVTVYKDDDEAFGIWHDKIGLPTQRISRMDEDENFWPASAPSEGPDGVCGPCSE 176

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFILPKMSIDTGMGLER 232
           I++               E    +EIWNLVF QF +          LP  +IDTGMGLER
Sbjct: 177 IYYQL-------------EDGSDVEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLER 223

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290
            A+VLQ    N+ ID    +++A+ +V G+KYE   +N    R I DH R+S F + + +
Sbjct: 224 TASVLQGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENV 283

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P  +    V+RR++RRA+     +   EP +  L+ A+     +AYPEL Q    + E 
Sbjct: 284 YPGPKDARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEA 343

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + SE++ F  T+D G+  +  +   +  +   ++ G  A  L  T+G+P +++Q +   +
Sbjct: 344 IESEEKAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQ 403

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
                D   F +A+++    A     G           +LKE    T F+GY+    +  
Sbjct: 404 NFT-FDWSGFREAMDKH---ADESDGGQRVLFQTGPLETLKEALRETPFVGYEQTEATAV 459

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           +K                    ++  + +  + V        + +V D +PFY E+GGQ+
Sbjct: 460 VK-----GIITGDGKGKGDDGQLLSHLDRPEDAV--------LRLVLDHSPFYGESGGQV 506

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    D    ++ D Q+ A  + VHH  + RG +    +    +D +NR  L+  HS
Sbjct: 507 GDIGVISNDNFEFEVIDTQRHAS-MIVHHGRLIRGKINEGETCTAKVDVENRTALARAHS 565

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LHHAL T +G H  Q GS + PD LRFD T+ K I    L  IE +V  ++ +   
Sbjct: 566 ATHILHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLGMVGKGDE 625

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +    ++  DA  +GA  L G KY D  R+VS+     G  S  LCGGTH+++T ++   
Sbjct: 626 IRWDTVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSF 680

Query: 709 YIVSESSIRAG-----------------------------------------------IR 721
            +V E S+  G                                               +R
Sbjct: 681 EVVVEESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVR 740

Query: 722 RI--EAITGQRA-------------------RSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           R+  E  +G+ A                    S        ++ L   L V+  +V+ R+
Sbjct: 741 RLKKELSSGKAADYPAEFVFDAKAAKAETTDISDYNAVRAAVRGLTRRLNVAITDVLSRL 800

Query: 761 EEIWEEYRKL--QLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDAL 816
           + +  +  KL  QL       +++ +DL     K+ D   +       +   ++  +D +
Sbjct: 801 DSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLIVAETPGANPNIMRGWIDQI 860

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875
           +KK  +   +L+  S   K  ++  ++ DL+DR   A D    +AKV+ GG GGGRP MA
Sbjct: 861 RKKSDTPTAVLLASSMNDKVMLVGGLSRDLVDRGLKAGDWVGAAAKVV-GGSGGGRPDMA 919

Query: 876 QSGGPNGNKADQAIAGVAS 894
           Q+GG + +K  +A+     
Sbjct: 920 QAGGKDASKLPEALQQARE 938


>gi|224014532|ref|XP_002296928.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
 gi|220968308|gb|EED86656.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
          Length = 933

 Score =  714 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/959 (33%), Positives = 464/959 (48%), Gaps = 102/959 (10%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
             S IR+TF+ +FQ K+ H  +PSS   P NDPTL+FTN+GM  FK IF G+  P     
Sbjct: 3   TTSKIRSTFISYFQSKHSHTFIPSSPSAPLNDPTLLFTNAGMNQFKPIFLGRAPPGTELA 62

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
                   QKC+RAGGKHNDL++VG+   HHTFFEMLG++SFG YFK+ AI  AWDLLT+
Sbjct: 63  TLTRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGSWSFGDYFKKEAIDYAWDLLTE 122

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +++ RLY T +        +ED EA   W +   L  ++++  +  DNFW M +TGP
Sbjct: 123 VYGIEEERLYATYFQGDEALGLEEDTEAKDFWLRY--LPEERVLGCSAKDNFWEMGDTGP 180

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           +E+    IEIWNLVF+QF +        LP   +DTGM
Sbjct: 181 CGPCSEIHYDRI-GNRDASALVNEDDPDVIEIWNLVFIQFNRDENG-LNPLPAKHVDTGM 238

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVIVDHL 279
           GLER+ ++LQ K++NYDID F  +  A E+V  +  YEG             +R + DH 
Sbjct: 239 GLERLCSLLQNKSSNYDIDAFTPIFDAIEKVANVGPYEGKLGEEDKTLKDTAYRAVADHA 298

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYP 338
           R+ +F +ADG +P NEGRGYVLRRI+RRA  Y + +   EP     L+P +    G  YP
Sbjct: 299 RTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFSTLVPVVVEIFGEHYP 358

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           ELI  +  I E ++ E+E F   LDRG+   +  +S   K +++ GD AF LYDT G P+
Sbjct: 359 ELIANQANIIEIVQEEEEAFSTMLDRGIKYFEEEISD-DKKKLVPGDKAFFLYDTLGFPI 417

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+ + +    G+  +D+  F + +E Q+ R+R                 L  K    Q +
Sbjct: 418 DLTELMATEAGMT-VDMKGFEEEMEGQKQRSREAR--------------LAAKGLGGQRL 462

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEVVF 515
                + +    E           D    V + +KA+      +   + A  G  V +V 
Sbjct: 463 ELIAEQTAWLADEGIADTDDSSKYDWDKVVDASIKAVFTSDGFLGEGDVAKEGDTVGLVL 522

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           D+T FYAEAGGQ  D G    +G  L + DVQ    G  +H  ++ +G +   +++   +
Sbjct: 523 DKTSFYAEAGGQDTDLGTISFEGGELFVNDVQ-AYGGYILHSGVISKGSVSVGIAVKCQV 581

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           DY  RR ++ NHS TH+L+ AL  +LG    Q GS    + LRFD +H   +++ +L+  
Sbjct: 582 DYARRRDVAPNHSMTHVLNAALREVLGEGCDQRGSQCNDEKLRFDFSHKSAMSTEQLRDT 641

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E  V D I +NLPV   +M+  DA A  G  A+ G  Y D VRVV V    G   S   C
Sbjct: 642 EIYVRDTIEKNLPVTADVMSLADAKAIPGVRAMFGEVYPDPVRVVRV----GDDCSVEFC 697

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---------------HLMGQD 739
           GGTH+S+T E     +  E+++  GIRRI A+T   A                  L  Q 
Sbjct: 698 GGTHISNTAEAEAFVLTEETAVAKGIRRITALTRGAAFEQKTAALEEIDADNSPDLDKQA 757

Query: 740 EKLK------SLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCH 789
             L+       L++ LK     +  R+E +     E  ++L      + L    E++   
Sbjct: 758 GALRKDLDAAELSAALKS---ELRARIEGVQKKGIEAKKRLLAGRVDKCLNGVTEEVEKA 814

Query: 790 KIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISK---EKKASVLIVVTED 845
            I     +   +    DSK  + V+ A+QK       M +   +     K     +V + 
Sbjct: 815 LIDGKKSLVLNLDIGADSKASQKVIKAVQKLAPEMAFMGISEEEPGSGGKILCFAIVPDS 874

Query: 846 LLD--RFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           L+      A +  +     +                  AQ   P+       IA   SF
Sbjct: 875 LMKETGLKANEWTKEVLDSVGGRGGGKP--------GSAQGQAPSCEDVGAVIAKAESF 925


>gi|321260042|ref|XP_003194741.1| alanine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317461213|gb|ADV22954.1| Alanine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 1012

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/969 (30%), Positives = 447/969 (46%), Gaps = 97/969 (10%)

Query: 4    VSSIRTTFLEFFQKN---GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
             + +R TF+++F       H   PSS +IP +D TL+F N+GM  +K +F G   P  + 
Sbjct: 62   AAKVRQTFIDYFVNQPGFEHTFWPSSGVIPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121

Query: 60   ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  A+ +AWDLLT
Sbjct: 122  SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKLGALTMAWDLLT 181

Query: 116  KEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
            + + L + RLY+T ++ D         EA ++W+ + G+    I+     DNFW M  TG
Sbjct: 182  RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI FD+           + +    +EIWN VF+Q+ ++   E   LP   +DTG
Sbjct: 241  PCGPCSEIHFDRIGG-REAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHVDTG 299

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDH 278
            MG ER+ +VL   ++NYD D+F  +    +++TG +                 +RVI DH
Sbjct: 300  MGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVIADH 359

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYT-EPLMMHLLPALCTEMGSA 336
            +R+ +  I+DG +P  +GRGYVLRR++RR + YA    G         L+P +   +G  
Sbjct: 360  IRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESLGPI 419

Query: 337  YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTH 394
            +PE+ +    + E L  E+  F +TL RG  L +   +     K  +L+G   ++LYDT+
Sbjct: 420  FPEVTKKIPELIEILNEEEASFARTLTRGEALFNKYATTAIAEKRTVLSGKDIWRLYDTY 479

Query: 395  GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
            G P+D+ Q +   RGL  ID  +F +A  E    ++A          +     L      
Sbjct: 480  GFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGGKEKAGAQVKLDVHDLA----- 533

Query: 455  TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511
                             D             + + + VK+I    + +    E       
Sbjct: 534  ------------ALEANDAVPKTDDSFKYNLDDIKASVKSIYHNSKFLNSTSELPPNTTF 581

Query: 512  EVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             ++ D+T FYAE+GGQ  DTG   I D    ++ DVQ    G  +H   +E G +     
Sbjct: 582  GILLDRTNFYAESGGQEYDTGVIAIDDKAEFKVEDVQ-VYNGYVLHIGRMEEGEIEVGDE 640

Query: 571  LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ++ T D   R  +  NH+ TH+L+ AL  +LG H+ Q GS + P  LRFD +H K I   
Sbjct: 641  VICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSIAVP 700

Query: 631  ELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGV- 688
            EL  IE   ND I + +PV  + M   +A    G  A+ G  Y D VRVV + Y    + 
Sbjct: 701  ELIKIEAICNDWIKKGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVCLGYPLEEIS 760

Query: 689  ----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------- 731
                       S   CGGTHV+ T +I    I+ ESSI  GIRRI A+TG  A       
Sbjct: 761  KNVEDARWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDAHDVSRKG 820

Query: 732  ------RSHLMGQDEKLKSLA-----SFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---- 776
                     +     K K LA     + L  S  +++ +   + E++ K+Q         
Sbjct: 821  AEFERKLQRIRELQGKEKELAMKPFLTELGQSGISLIKK-NSLKEQFEKVQGELVAAAKA 879

Query: 777  -----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                  K+      +   +  + N  +       + +  +   A  K     +       
Sbjct: 880  KVAADSKIISEAIKIYFQENPNENVFAGSFDVGGNSKTLTAAVAAGKAASKAVYAFSADP 939

Query: 832  KEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
            +  K + +  + + +L     +A       AKV+ GG GGGR   A   G   NK D+AI
Sbjct: 940  ETGKVAHVNYLPKPILESKALDAKIWLNEVAKVI-GGKGGGRDDSAAGVGSEINKIDEAI 998

Query: 890  AGVASFLKK 898
                S  KK
Sbjct: 999  VVAKSVYKK 1007


>gi|227496182|ref|ZP_03926488.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834265|gb|EEH66648.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 904

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/941 (33%), Positives = 492/941 (52%), Gaps = 85/941 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F   GHE+ PS SL+   +P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFASQGHEIRPSVSLVSP-EPSILFTVAGMVPFIPYILGTEQAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVGRT RH TFF+M GNFSFG YFKE AI  AWDLLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAISYAWDLLTGPQSEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T++++DE ++    K+ G+    + ++   +  WS  + GP G C EI 
Sbjct: 116 KYGLDGDRLWMTIWEKDEVSWNHLTKVIGVPQQHVQKLPFEEISWSTGQPGPAGACCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKM----SIDTGMGL 230
           +D+G    P G P +  +G+R++EIWNLVF +F + + +   F L       +IDTG GL
Sbjct: 176 YDRGAQYGPDGGPVADAQGDRFLEIWNLVFDEFLRGEGEGHDFELVGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I A+E ++G KY              + V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVYPVIAAAEAMSGKKYGLGAAGPSAGQAYEDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI DG+ P N+GRGYVLRR++RRA+   RLLG  +  M  LL A    M  +YPE
Sbjct: 296 RSALMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVQDAAMPTLLTASKDVMKLSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYD 392
           L      I E   +E++ F +TL  G  +LD  ++         G   ++ G VAF+L+D
Sbjct: 356 LETGWAQISEVAYAEEDAFRRTLAAGTTILDTAVAAAKEKAKDSGTKPVVPGSVAFELHD 415

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK- 451
           T G P+D+  ++   +G+  +D ++F   + EQ+ RARA +    +G  +   F   EK 
Sbjct: 416 TSGFPIDLTLEMAAEQGVE-VDELAFRNLMAEQKERARADARAKKAGHADIRAFQEIEKA 474

Query: 452 -YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
             G + F+GY                         +   ++V  ++  G       +  +
Sbjct: 475 MGGGSTFLGY-----------------------TESSAEAVVTGLLVDGVPQPAVTAPAE 511

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           VEVV D+TPFYAE GGQL D G   + DG  +++ DVQ    G+ VH   +  G +    
Sbjct: 512 VEVVLDRTPFYAEMGGQLADQGVIRLADGGVVEVVDVQAPIRGLSVHRGRLTEGTIALGE 571

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
                ID   R  ++  H+ATH+++  L  ++  H  Q GS  +P  LRFD  H   +++
Sbjct: 572 RAYAEIDSARRLAIARAHTATHMVYAGLRQVVNEHADQAGSENSPSRLRFDFRHGSALSA 631

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            ++  IE  VND +AQ+L V T +M+ ++A  +GA AL G KY   VRVV++    G   
Sbjct: 632 GQVGDIEALVNDKLAQDLTVRTDVMSLDEARQAGAIALFGEKYGTEVRVVTI----GDGF 687

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              LCGGTHV STG I  + ++ ESSI +G+RRI+A+ G  A      +   +  + + +
Sbjct: 688 DKELCGGTHVPSTGHIGRVAVLGESSIGSGVRRIDALVGDGAYDFQAKEHALVSQVTAIV 747

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----- 804
                 +  R+  +    ++     A++KL    +     K A+V   +  +        
Sbjct: 748 GGRSDELPERIASLMTRLKE-----AEKKLAAAEQAAMVAKAAEVVDSAERVGGYLLASA 802

Query: 805 ------DSKELKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                  +  L+S++  +++++  G   ++ + G+S E+   ++            A DL
Sbjct: 803 NLGSVGSADALRSLVLDVRQRLGEGEPAVVAVGGVSGERPLVIVATNGAARDLGAKAGDL 862

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            R++AK LGGGGG G+P +AQ GG +    D+A+  ++  L
Sbjct: 863 VRVAAKTLGGGGG-GKPDLAQGGGQDAAALDEALRALSHAL 902


>gi|300870855|ref|YP_003785726.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300688554|gb|ADK31225.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 864

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/887 (36%), Positives = 484/887 (54%), Gaps = 51/887 (5%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DP+L+FT +GM+ FK  + G +K  Y  V T+QKC R     +DL+N
Sbjct: 19  HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74

Query: 80  VGRTNRHHTFFEMLGNFS-FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF   G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPVERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW    ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q        L  + IDTGMGLER+  ++Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDVDGNLTPLKNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                 +KYEGNN     ++ DHLR+  F++A+G  P+NEGRGYVLRR++RRA+  A  L
Sbjct: 255 ILNKLNVKYEGNNKTKINLLADHLRALVFVLAEGCKPSNEGRGYVLRRLLRRALKTANDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  L  A+       Y  L + +  I++ L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGAFLNELTSAVINVYKDIYDYLPKEEENIKKILKEEENKFLSTISAGMNKLYNVMEE 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
             + ++++G  AF L+DT+GLP DI ++     G   +D   F  A+EEQ+ R+R     
Sbjct: 375 NKESKVISGKDAFMLFDTYGLPFDITEEEANDHGFT-VDKKGFEDAMEEQKKRSR----- 428

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
            G+G  +K  F   E Y  T+++G D                      L NG+ S + A+
Sbjct: 429 -GTGEDKKSKFGFVENY-ETKYVGEDR-------------------DSLINGIKSKIVAL 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIF 554
            + GE  E A S   V V+ + +PFY E GGQ+GD G   I  G +L++ D QKK   I 
Sbjct: 468 YENGEKKESASS-SNVAVITESSPFYGEMGGQVGDNGFIEISSGEKLKVLDTQKKENTII 526

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            H        L+    + L +++  R  +  NH+ATH+L   L   LG+H++Q GS +  
Sbjct: 527 -HIVDCGNKTLKVGEEIKLIVNFDRRSAIRKNHTATHILQKVLELTLGNHINQAGSFVCE 585

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D LRFD TH   I    L +IE+ VN+I+ +++P V + M +E+AIASGA AL G KY D
Sbjct: 586 DYLRFDFTHPDSINEETLINIENKVNEIVFKSMPAVIKYMPKEEAIASGAKALFGEKYPD 645

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VR++ +    G   S  LCGG+H+++T E+   +IVSE S+ +G+RRIEAITG  A   
Sbjct: 646 TVRILDI----GEGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLNAARE 701

Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
                 K+KSL+  L  ++   +  R E +  E +KLQ  + + K   +          D
Sbjct: 702 ATNLFNKVKSLSHILNANKIDELTTRAENLQTEIKKLQKENKQLKTSGSSSKAFIDNCED 761

Query: 794 VNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           +N +     E   D K+++   D ++++++  I  ++  +     S+++ VT   L   N
Sbjct: 762 LNGIKFYNLEFDEDIKDIRLYADTIKERVKDSIAFMISKTNN---SIIVQVTGKALKEKN 818

Query: 852 --AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A  L +      GG GG G+   AQ    N  KA +AI  + S L
Sbjct: 819 ILANSLIKDIIAAAGGRGG-GKDSFAQGSIENIEKAKEAINKIKSSL 864


>gi|330802829|ref|XP_003289415.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum]
 gi|325080498|gb|EGC34051.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum]
          Length = 925

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/915 (37%), Positives = 486/915 (53%), Gaps = 88/915 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FTG E+  Y+ VT
Sbjct: 34  TTKEIREKFLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTGLEESKYKLVT 93

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDL 120
           T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY  FK  +IQ AW+LLTK+F L
Sbjct: 94  TSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWNLLTKDFGL 153

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQ 179
            + RL I+V + DEE+  +W+   GLS DKI+ +   DNFWSM +  GPCGPCSEIF+D 
Sbjct: 154 PKERLAISVLEGDEESASIWRDQIGLSNDKIMYLGKKDNFWSMGDGPGPCGPCSEIFWDH 213

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
           GE       G   +GER++EIWNLVFMQ+ +  K E   L    +DTGMGLERMATVLQ 
Sbjct: 214 GE-------GKEVDGERFLEIWNLVFMQYNRNEKGELEKLAMPCVDTGMGLERMATVLQG 266

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLRSSSFLIADG 289
           KT NYDIDLF++LI + ++   +     +           V +RVI+DHLRS SFLI+DG
Sbjct: 267 KTTNYDIDLFQNLINSFKEQVMIDPTKASHIIKQDPQRVEVAYRVIIDHLRSISFLISDG 326

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P N GRGYVLR+I+RRA+ Y +LLG+  P +  L   L  EM   +P+L +    I+ 
Sbjct: 327 VIPFNIGRGYVLRKIIRRALSYGKLLGFEGPFLYQLFSILEHEMADTFPQLRERSNEIKN 386

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            L +E+  F K + RG+  L+ ++        LN D  F LY+T+GLPL+ + ++   + 
Sbjct: 387 VLLNEETTFYKAIKRGIPYLEEMIDR----GQLNEDNLFLLYNTYGLPLE-ISEVKAKQN 441

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL----KEKYGATQFIGYDLLRG 465
              ID+      ++E R+++RA      S              K    + +FIGY+    
Sbjct: 442 NIEIDMEKVANLVDETRNQSRATWKSNESQPNTNNPLDEVKKWKNDNISPKFIGYETTLN 501

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
            + +         K   D  N +                      V + FD++PFY ++G
Sbjct: 502 DESLIT-------KSFFDNDNHL----------------------VYLSFDKSPFYGKSG 532

Query: 526 GQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAI---------VERGILRTEMSLVLT 574
           GQ+GDTG            + D  K  +   V               +  L     +   
Sbjct: 533 GQIGDTGIIKSKNSNQIYNVIDTIKPYDNSLVLVVKWDPTKQLITNVQDDLAEGSIVSSQ 592

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++   R+Q +I+HSATHLLH AL  I+G  V Q GS + P+ LRFD TH K ++  E+  
Sbjct: 593 VEKSVRKQTAIHHSATHLLHAALREIIGKSVVQAGSFVGPNILRFDFTHGKKLSVKEIDQ 652

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VND+I Q++ + T  M   +A    A  L   KY D VRVVS+        S  LC
Sbjct: 653 IEKWVNDVIDQDIYLETHEMPYSEASKGDAIQLFSEKYTDLVRVVSIPG-----FSKELC 707

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHV  + +I    I+SESS+ AG RRIEAI G+ A        + ++S++  + V   
Sbjct: 708 GGTHVERSSDIHHFKIISESSVAAGTRRIEAIAGKVATEWFKSHYKMVQSISDNINVPLT 767

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH--KIADVN--------FMSHIISEV 804
           N    +E +    ++ +    +  L++ +   S H   I  V            H++   
Sbjct: 768 NFQPSIERLVSSNKQKEKEIEELNLKIALLSASSHSGHICGVECGSGIDHPLSIHVVDCD 827

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLA-RLSAKV 862
           DSK L  +  +  K   + I   + +SK+ KA   +   ++    +  A  +  +L + +
Sbjct: 828 DSKILNVIAGSFSKSNPNHIN--ITVSKKGKAICNLGANQEPNSLKTTADTIVKKLLSSL 885

Query: 863 LGGGGGGGRPHMAQS 877
             GG GGG   +A +
Sbjct: 886 NCGGKGGGSKILANA 900


>gi|315046056|ref|XP_003172403.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342789|gb|EFR01992.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 970

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/931 (32%), Positives = 462/931 (49%), Gaps = 95/931 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R TFL++F+KNGH  +PSSS++P +DPTL+F N+GM  +K+IF G   P       +  
Sbjct: 23  VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD
Sbjct: 83  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCS
Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+
Sbjct: 202 EIHYDRIGGRNAAH-LVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERL 260

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L  A + +TG +    N            +RV+ DHLR+ +F
Sbjct: 261 VSILQNKSSNYDTDVFSPLFAAIQNITGARPYTGNFGAQDVDGIDTAYRVVADHLRTLTF 320

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I DG  P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ +
Sbjct: 321 AITDGAAPNNEGRGYVVRRVLRRGVRYARKYMQVEIGSFFSKLVPALVEQMGDMFPEIKR 380

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+
Sbjct: 381 KQNDVMEILDEEEVSFAKTLDRGERQFETYAQQALDSGAGKLHGADVWRLYDTFGFPVDL 440

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   R L  ID   F +A    R +A+  S G     ++ +  ++            
Sbjct: 441 TRLMAEERQLT-IDDAEFEEA----RLKAKEASKGQAKAASDLLKLTVH----------- 484

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                   ++++               + + +KAI    E+++      + +++ ++ D+
Sbjct: 485 ----TLSTLEKNGVPKTNDDAKFGKGNIVANIKAICHGKEVIDSTKDIPADEQIGIILDK 540

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S++   D
Sbjct: 541 TNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMY-GGYVLHTGFIKYGNFSVNDSVIAEYD 599

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ ++L+ IE
Sbjct: 600 ELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIE 659

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E           
Sbjct: 660 SMSTDYIRQNCAVYSQEVPLSTAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDP 719

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------- 736
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A             
Sbjct: 720 RWEAVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGER 779

Query: 737 -----------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKL 779
                       +D ++KSL   L     + V + +      +I ++    Q    K ++
Sbjct: 780 LNRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEV 839

Query: 780 QLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           +  ++ +           + +  +    + K +   +  ++ K+ SG  + V  +   K 
Sbjct: 840 KTAIDTISTYFEENKDSPSLVIKLPISANQKAISESLTHVKTKL-SGKALYVFAADGSKV 898

Query: 837 SVLIVVTEDL-LDRFNAVDLARLSAKVLGGG 866
           +    VT DL     +A + A   + ++GG 
Sbjct: 899 AHGCYVTPDLTTKGASANEWASAVSSIVGGK 929


>gi|226328743|ref|ZP_03804261.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198]
 gi|225201929|gb|EEG84283.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198]
          Length = 589

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/617 (46%), Positives = 389/617 (63%), Gaps = 44/617 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++PSSSL+P NDPTL+FTN+GM  FK++F G +   Y   
Sbjct: 3   KSTAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  + F+
Sbjct: 63  TTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEEWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY  D+EA+ +W K  G+ A++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYATDDEAYDIWNKEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMDPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+  VLQ   +NYDIDLF+ LI++  QVT      N   + RVI DH+RS SFL+ DG++
Sbjct: 243 RITAVLQHVNSNYDIDLFRSLIKSVAQVTNATDLENK--SLRVIADHIRSCSFLVCDGVI 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  +LG  +     L+  L   M  A  EL + + ++E+ L
Sbjct: 301 PSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIEVMAEAGEELKRQQAIVEKVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L++L  D+IL G+ AF+LYDT+G PLD+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLQLLDEELANLT-DDILPGETAFRLYDTYGFPLDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EEQR RAR  S G G+      + SL +    ++F GYD          
Sbjct: 420 -VDENGFDVAMEEQRKRARESS-GFGTD-----YNSLIKVDSRSEFSGYD---------- 462

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                         +     + AI   G+ V E  +G++  +  ++T FYAE+GGQ+GD 
Sbjct: 463 -------------HDEQQGTITAIFHNGQSVTELKAGEEGIIFLNKTAFYAESGGQVGDK 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G     ++TD QK  + I  H   V  G       +  TID   R  + +NHSATH
Sbjct: 510 GVLTGKDSLFEVTDTQKYGKAI-GHIGKVNVGSFIVNHKINATIDIARRDAIRLNHSATH 568

Query: 592 LLHHALSTILGSHVSQN 608
           LLH AL  +LG+HV+Q 
Sbjct: 569 LLHAALRQVLGTHVTQK 585


>gi|296126160|ref|YP_003633412.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296017976|gb|ADG71213.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 857

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/886 (34%), Positives = 478/886 (53%), Gaps = 61/886 (6%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DPTL+FT +GM+ FK  + G +K  Y  V T+QKC R     +DL+N
Sbjct: 19  HVIEKSSSLIPIDDPTLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74

Query: 80  VGRTNRHHTFFEMLGNFS-FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF   G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW    ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q        L  + IDTGMGLER+  ++Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDTDGNLSPLQNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
             +   +KYE  N     +I DHLR+  F++A+G +P+NEGRGYVLRR++RRA+  +  L
Sbjct: 255 IIKKLNVKYEDKNKTKINLIADHLRALVFVLAEGCVPSNEGRGYVLRRLLRRALKTSSDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  L  A+       Y  L + +  I+  L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGAFLNELTGAVIDVYKDIYDYLPKEEENIKRILKDEENKFLNTISAGMNKLYSVMED 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
               +++ G  AF L+DT+GLP DI ++     G   +D   F +A+EEQ+ R+R     
Sbjct: 375 NKDSKVIKGSDAFMLFDTYGLPFDITEEEANDHGFT-VDRAGFEEAMEEQKKRSR----- 428

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
            G+G  +K  F            GY     +K++ ED   L         NGV + V ++
Sbjct: 429 -GTGEDKKSKF------------GYVANFDTKYVGEDLNNLT--------NGVKAKVISV 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIF 554
                +           +V D +PFY E GGQ+GD G     D   +++TD QKK   I 
Sbjct: 468 YNDNTV-----------IVTDVSPFYGEMGGQVGDNGYIETSDKQTIKVTDTQKKENTII 516

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            H         +    + L ++   R  +  NH+ATH+L   L   LG+HV+Q GS +  
Sbjct: 517 -HILENNNHSFKEGEEITLFVNADRRMAIRKNHTATHILQRVLELTLGNHVNQAGSYVCE 575

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D LRFD TH   I+   L +IE+ VN+++ +++P V + M++E+AI+SGA AL G KY D
Sbjct: 576 DYLRFDFTHPDSISEETLLNIENKVNEVVFKSMPAVIKYMSKEEAISSGAKALFGEKYPD 635

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VR++ +    G   S  LCGG+H+++T E+   +IVSE S  +G+RRIEAITG +A + 
Sbjct: 636 TVRILDI----GDGFSVELCGGSHLTNTSEVGYFHIVSEGSAASGVRRIEAITGLKAANE 691

Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC---HK 790
                 K+K+LA  L  S+   +  R E +  E +KLQ    + K               
Sbjct: 692 ATKLFSKVKNLAHILNASKIEEITIRAENLQNEVKKLQKDIKQLKTSGASVTSFMDNYED 751

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--D 848
           +  + F +   +E D KE++   D ++++++  I +++    +   S+L+ +T   +   
Sbjct: 752 LGGIRFYNLEFNE-DIKEVRLYADTIKERVKDSIAVMIS-KTDSSNSILVQLTGSAVKEK 809

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           + +A ++ +   K   GG GGG+   AQ    N +KA + I  + S
Sbjct: 810 KLSANNIIKDIIKT-AGGRGGGKDTFAQGSIENIDKAKEEINKLKS 854


>gi|219682314|ref|YP_002468698.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219622047|gb|ACL30203.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086140|gb|ADP66222.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086713|gb|ADP66794.1| alanyl-tRNA synthetase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087298|gb|ADP67378.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087809|gb|ADP67888.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 878

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/917 (34%), Positives = 506/917 (55%), Gaps = 70/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V
Sbjct: 3   KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F+
Sbjct: 63  ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + Q +L+I+VY +D E +K+W  I  + +++IIRI          +NFW M +TGPCGPC
Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D  + +        E    R++EIWN+VF++F + +K +   L   SIDTGMGLE
Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY ID+F+ LI+   Q++ +     + ++ +VI DH+RS S++IAD IL
Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L
Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+   + + 
Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKI-DNNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID  S+  A E+Q+ ++  +     +     I            F GY           
Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGY----------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD 
Sbjct: 462 ------------TKTITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +   +K  +    H   +  G +    SL   ID   R  + +NHSATH
Sbjct: 510 GQLYHKKSSFIVEKTKKYGK-TIGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T
Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+
Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFINN-----FSIELCGGTHTQRTGDIGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S+SS+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++  + +++  + + L+
Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + + N + +     +  +I     +++I  + + K L+ ++D L+K++++ II+
Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-------KVLGGGGGGGRPHMAQSGG 879
           L+ I    + ++++ VT +LLD   A+ +  +                      +A+ GG
Sbjct: 804 LINIIN-NRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKGGGKK--------EIAEGGG 854

Query: 880 PNGNKADQAIAGVASFL 896
            N  +    +  +  ++
Sbjct: 855 ANTKQLPSILNTIKLWI 871


>gi|15617007|ref|NP_240220.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11134963|sp|P57483|SYA_BUCAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25293087|pir||B84977 alanine-tRNA ligase (EC 6.1.1.7) [imported] - Buchnera sp.  (strain
           APS)
 gi|10039072|dbj|BAB13106.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 878

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/917 (34%), Positives = 506/917 (55%), Gaps = 70/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V
Sbjct: 3   KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F+
Sbjct: 63  ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + Q +L+I+VY +D E +K+W  I  + +++IIRI          +NFW M +TGPCGPC
Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D  + +        E    R++EIWN+VF++F + +K +   L   SIDTGMGLE
Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY ID+F+ LI+   Q++ +     + ++ +VI DH+RS S++IAD IL
Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L
Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+   + + 
Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKI-DNNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID  S+  A E+Q+ ++  +     +     I            F GY           
Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGY----------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD 
Sbjct: 462 ------------TKTITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +   +K  +    H   +  G +    SL   ID   R  + +NHSATH
Sbjct: 510 GQLYHKKSSFLVEKTKKYGK-TIGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T
Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+
Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFINN-----FSIELCGGTHTQRTGDIGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S+SS+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++  + +++  + + L+
Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + + N + +     +  +I     +++I  + + K L+ ++D L+K++++ II+
Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-------KVLGGGGGGGRPHMAQSGG 879
           L+ I    + ++++ VT +LLD   A+ +  +                      +A+ GG
Sbjct: 804 LINIIN-NRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKGGGKK--------EIAEGGG 854

Query: 880 PNGNKADQAIAGVASFL 896
            N  +    +  +  ++
Sbjct: 855 ANTKQLPSILNTIKLWI 871


>gi|311257039|ref|XP_003126924.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 769

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/754 (35%), Positives = 394/754 (52%), Gaps = 58/754 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           +++    +EIWNLVF+Q+ ++       LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  +   +G A+PE
Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG  + + GD A+ LYDT+G P+D
Sbjct: 364 LKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   +GL  +D+  F    EE+R  A+  S G G+G  + I   +   Y   +   
Sbjct: 424 LTGLIAEEKGL-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             L       K +           +     + V A+ +    VEE  +GQ+  VV D+T 
Sbjct: 476 RGLEATDDSPKYNYH--SDSSGSYVFESAVATVMALRRDRMFVEEVCTGQECGVVLDKTC 533

Query: 520 FYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L
Sbjct: 534 FYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGSLKVGDQVRL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K
Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTQQIK 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+  N++I    PV  +      A A  G  A+    Y D VRVVS+           
Sbjct: 651 KAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               G + S   CGGTH+ ++       +  E S
Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVM--EES 742


>gi|219681759|ref|YP_002468145.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471461|ref|ZP_05635460.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624602|gb|ACL30757.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 878

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/917 (34%), Positives = 506/917 (55%), Gaps = 70/917 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++ GH ++PSSSL+P ND TL+FTN+GM  FK IF G++K  Y  V
Sbjct: 3   KTTDKIRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRV 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            TVQ+C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT  K F+
Sbjct: 63  ATVQRCLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + Q +L+I+VY +D E +K+W  I  + +++IIRI          +NFW M +TGPCGPC
Sbjct: 123 IPQNKLWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D  + +        E    R++EIWN+VF++F + +K +   L   SIDTGMGLE
Sbjct: 183 TEIFYDYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ   +NY ID+F+ LI+   Q++ +     + ++ +VI DH+RS S++IAD IL
Sbjct: 243 RISAVLQNVYSNYHIDVFQKLIKNIAQLSSI--NNLDHISFQVIADHIRSCSYIIADNIL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGY+LRRI+RRA+ +   +G  +     L+ ++   MG     L + +  IE  L
Sbjct: 301 PSNEHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+ +F  TL++GL +L+  +  +  + IL+G  AF LYDT G P+D+  D+   + + 
Sbjct: 361 KIEEMQFSYTLEKGLKILNSEIEKI-DNNILSGKTAFYLYDTFGFPIDLTSDVCREKNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            ID  S+  A E+Q+ ++  +     +     I            F GY           
Sbjct: 420 -IDYNSYELAKEKQKEQSNINKKFYKNYNNNIILND------TCIFEGY----------- 461

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S+VK I    + V + +  +K  +  D+TPFY+E+GGQ+GD 
Sbjct: 462 ------------TKTITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDI 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          +   +K  +    H   +  G +    SL   ID   R  + +NHSATH
Sbjct: 510 GQLYHKKSSFIVEKTKKYGK-TIGHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH  L  ILG  + Q GS +T   LRFD ++ K I +++++ IE+ +N  I  N+ + T
Sbjct: 569 LLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKT 628

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +N E+A    A AL   +Y   VRVV +        S  LCGGTH   TG+I L  I+
Sbjct: 629 EELNLEEAKKKKAMALFDDQYGSIVRVVFINN-----FSIELCGGTHTQRTGDIGLFKII 683

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S+SS+ +GI+RIEA+TGQ+A  +L  +D  +K ++  L  S  ++  + +++  + + L+
Sbjct: 684 SQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISFLLNCSTVDIKEKTKKLTIKTKNLE 743

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + + + N + +     +  +I     +++I  + + K L+ ++D L+K++++ II+
Sbjct: 744 KKIIQLQKKENTQYIKKILKNVTEIKGTKLLTNIFYDYEQKSLRMIVDQLKKELKNTIII 803

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-------KVLGGGGGGGRPHMAQSGG 879
           L+ I    + ++++ VT +LLD   A+ +  +                      +A+ GG
Sbjct: 804 LINIIN-NRFTIIVGVTRNLLDYITAIKIMEMIINKTNGKGGGKK--------EIAEGGG 854

Query: 880 PNGNKADQAIAGVASFL 896
            N  +    +  +  ++
Sbjct: 855 ANTKQLPSILNTIKLWI 871


>gi|313665096|ref|YP_004046967.1| alanine--tRNA ligase [Mycoplasma leachii PG50]
 gi|312949489|gb|ADR24085.1| alanine--tRNA ligase [Mycoplasma leachii PG50]
          Length = 896

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/930 (31%), Positives = 469/930 (50%), Gaps = 98/930 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   STNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AIQLAW+LLT    FD+
Sbjct: 65  NSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIQLAWELLTDKNYFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+G
Sbjct: 121 DKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRG 179

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       GS     + E +RYIE+WN+VF QF          LP+ +IDTG GLER A+
Sbjct: 180 EVWDPNKIGSRLISDNIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNI-----------VNHRVIVDHLRSS 282
           + Q    N++ D+F   I+  EQ+T    KY  +N               +VI DH+R++
Sbjct: 240 IFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
            F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP LI 
Sbjct: 300 VFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLID 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K L+E+T++ E+E+F KTL +G  LL+ ++       I++G  A  L++++G P++   
Sbjct: 360 RKTLVEQTIKDEEEKFLKTLSKGYDLLENII---KTKNIVSGKDALLLFESYGFPIEQTI 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +I        +D+  FN  LE+ +   R     L +   +   F+  +    ++F G+  
Sbjct: 417 EI-SELSNVQVDVEGFNNLLEQAKQATRNARKDLKAWDKQNELFTKLKV--ESEFTGWSE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L                            V  +    + VE     Q+  V+ D+TPFYA
Sbjct: 474 LSRDNV----------------------KVIYMFTDQKQVESITD-QEAFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V +G L+    +   ++ + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNIHRIKV-QGTLKVNDLINCRVEEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG++V Q+GS    +GLR D T+ +  TS EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTNVMQSGSYNDENGLRMDFTYHRLPTSEELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY+  VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS-----------FL 749
           T EI    I    S  +G+ RI+ +T  RA   +L  Q +  K  A             L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKAYKDQAESIIDKYNQNKDLL 744

Query: 750 KVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKR--------KLQLNVEDLS 787
           K  Q            + +     ++++ ++ +++   + K+        KL    +   
Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDQLKEVNKDYDKKVNDLITANKLLKYKDLTP 804

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                ++N +    +++  K+LK + D L+ K    I++L+  +KE    +++ V + L 
Sbjct: 805 SLNKDNINEIRLETTDLTIKDLKQLADDLRNKYNDLIVILLSSTKENN-FIVVAVGQSLQ 863

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +++ A+D+            GGG  ++AQ 
Sbjct: 864 NKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|42560730|ref|NP_975181.1| alanyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|48428509|sp|P61704|SYA_MYCMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|42492226|emb|CAE76823.1| alanine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321137|gb|ADK69780.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 896

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/930 (30%), Positives = 469/930 (50%), Gaps = 98/930 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   STNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT  K FD+
Sbjct: 65  NSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKKYFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+G
Sbjct: 121 DKNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRG 179

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       G        E +RYIE+WN+VF QF          LP+ +IDTG GLER A+
Sbjct: 180 EIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNI-----------VNHRVIVDHLRSS 282
           + Q    N++ D+F   I+  EQ+T    KY  +N               +VI DH+R++
Sbjct: 240 IFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
            F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP LI 
Sbjct: 300 VFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLID 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P++   
Sbjct: 360 KKTLVEQTIKDEEEKFLKTLSKGYDLLENII---KTKNTVSDKDALLLFESYGFPIEQTI 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +I     +  +D+  F + LE+ +   R     L +   +   F+  +    ++F G+  
Sbjct: 417 EISELSNVT-VDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFTGWSE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  +    + VE   + Q+V V+ D+TPFYA
Sbjct: 474 TSRDN----------------------AKVIYMFTDQKQVESITN-QEVFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V +G L+    +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNIHRIKV-QGTLKVNDLINCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY+  VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS-----------FL 749
           T EI    I    S  +G+ RI+ +T  RA   +L  Q +  K  A             L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKVYKDQAESIIDKYNQNKDLL 744

Query: 750 KVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKR--------KLQLNVEDLS 787
           K  Q            + +     ++ + ++ +++   + K+        KL    +   
Sbjct: 745 KNDQLENIYLQIKNTTINKDNLLVIKNLLDQSKEVNKDYDKKVNDLITANKLLKYKDLTP 804

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                ++N +    ++++ K+LK + D L+ K    I++L+  + E    +++ V++ L 
Sbjct: 805 SLNKDNINEIRLETTDLNIKDLKQLADDLRNKYNDLIVILLSSTNEN-TFIVVAVSQSLQ 863

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +++ A+D+            GGG  ++AQ 
Sbjct: 864 NKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|256383814|gb|ACU78384.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384644|gb|ACU79213.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455443|gb|ADH21678.1| alanine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 896

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/930 (30%), Positives = 467/930 (50%), Gaps = 98/930 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   STNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT    FD+
Sbjct: 65  NSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+G
Sbjct: 121 DKDKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRG 179

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       G        E +RYIE+WN+VF QF          LP+ +IDTG GLER A+
Sbjct: 180 EIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSS 282
           + Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH+R++
Sbjct: 240 IFQNTPTNFETDIFYPTIKKVEQLTNDQFKYSIDNYFNPNKKQTRINTAFKVIADHIRAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
            F I+DG+ P N+ RGY++RR++RR+  + + LG  +  +  L+ ++   M   YP LI 
Sbjct: 300 VFAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLID 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P++   
Sbjct: 360 KKTLVEQTIKDEEEKFLKTLSKGYDLLENII---KTKNTVSDKDALLLFESYGFPIEQTI 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +I        +DI  F + LE+ +   R     L +   +   F+  +    ++F G+  
Sbjct: 417 EI-SELSNVTVDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFTGWSE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  +    + VE     Q+  V+ D+TPFYA
Sbjct: 474 TSRDN----------------------AKVIYMFTDQKQVESITD-QEAFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V +G L+    +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKV-QGTLKVNDLVNCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS-----------FL 749
           T EI    I    S  +G+ RI+ +T  +    +L  Q +  K  A             L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744

Query: 750 KVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKR--------KLQLNVEDLS 787
           K  Q            + +     ++++ ++ +++   + K+        KL    +   
Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYKDLTP 804

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                ++N +    ++++ K+LK + D L+ K    I++L+  + E    V++ V++ L 
Sbjct: 805 SLNKDNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENN-FVVVAVSQSLQ 863

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +++ A+D+            GGG  ++AQ 
Sbjct: 864 NKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|224047577|ref|XP_002187191.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial [Taeniopygia
           guttata]
          Length = 986

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/965 (30%), Positives = 452/965 (46%), Gaps = 81/965 (8%)

Query: 2   SNVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
            +   IR  FL FF++ +GH  LPS+ + P  DP L+F N+GM  FK IF G   P    
Sbjct: 31  PSAGQIRAAFLRFFEERHGHRRLPSAPVRPRGDPRLLFVNAGMNQFKPIFLGTVHPRSEL 90

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
             Y+ V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW+LLT
Sbjct: 91  AQYRRVVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLT 150

Query: 116 KEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           + +++ + RLY+T +  D        EE   +W  + G+ A  ++     DNFW M +TG
Sbjct: 151 EVYEIPRDRLYVTYFGGDPSLGLSADEECRDVWLHL-GVPASHVLPFPLKDNFWEMGDTG 209

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPC+EI +D            ++     +EIWNLVFMQ+ ++ +     LP+  +DTG
Sbjct: 210 PCGPCTEIHYDHVGGGRNAAALVNQGSPDVVEIWNLVFMQYSREVEGNLLPLPQHHVDTG 269

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDH 278
           MGLER+ TVLQ K ++YD DLF  ++ A  +V          G    G   + +RV+ DH
Sbjct: 270 MGLERLVTVLQNKRSSYDTDLFTPILDAIHKVCRAPRYQGLVGNADVGRVNMAYRVVADH 329

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+    I DGI P   G   VLRRI+RRA+ + + +L     L+  L+P +   +G AY
Sbjct: 330 VRTLCVCITDGIYPGFSGAELVLRRILRRAVRFCSEVLQAPPGLLASLVPTVVEVLGDAY 389

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
           PEL +    I++ L   +  F  +L+RG  +++  +  +        +VA+ LY + G P
Sbjct: 390 PELTRNANQIKDILNENEAAFLSSLERGRRIIERTVQQMEPSTNFPAEVAWSLYGSLGFP 449

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD++  +L  +G++ +D  +FN+   E    A+  + G  +G T      L + +     
Sbjct: 450 LDLIDLMLEEKGIS-LDSAAFNKLALED---AKRKAGGPQAGQTGTANTRL-DVHSLAWL 504

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            G  +       K    +          +   + V  + +   + +E  +GQ+  V+ D+
Sbjct: 505 QGSSVPTTDDSPKYTYTLGLHGQ--YEFSPCQATVLMLYKDQSLHKEVGAGQRCGVILDR 562

Query: 518 TPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           T FYAE GGQ  D G  I  G +     +  V     G +V H +     LR    + L 
Sbjct: 563 TNFYAEQGGQDSDQGYMIRLGQQDVLFPVESV--HLCGGYVIHEVTAVETLRAGDQVQLF 620

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R     NH+ATHLL  AL  +LG    Q GS +T   LRFD      +T  +L+ 
Sbjct: 621 VDEAQRLACMRNHTATHLLSFALRRVLGDSTEQRGSHVTAQQLRFDFDTKGHVTVEQLQQ 680

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------ 688
           +E  V D+I +N  V    +    A        +  +Y D VR+VS+      V      
Sbjct: 681 VEQVVRDLIQKNEVVHMAEVPLTLARRVQGLRAVDEEYPDPVRIVSLGVPVENVLTCDSK 740

Query: 689 ----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR---ARSHLMGQDEK 741
                S  LC GTH+  TG +  L I+SE  +  GI R+ A+TG R   AR        +
Sbjct: 741 AAMQTSVELCCGTHLLQTGSVEDLAIISERQLVKGISRVIAVTGGRAKEAREVGQCLAVE 800

Query: 742 LKSLASFLKVSQGNVVGR------VEEIWE----------EYRKLQ--LIHAKRKLQLNV 783
           + S++  +K    ++         V ++ +          + ++LQ  L   +R     +
Sbjct: 801 VDSVSLRMKQRITSIPEMQNLSKEVGQLTKVVASTAMPQWQRKELQTILKALQRTANTAI 860

Query: 784 EDLSCHKIADVNFM--------SHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISK 832
           + L   +   V  +          II  + +     L  V++ L  K     ++L+    
Sbjct: 861 KKLELQQAEKVAQILLAKYCNQPVIIDTIPADSLSILMKVVNQLCDKSPGTSVLLLSPQT 920

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             +      V++  L  F+A D A      +  G  GG P +A+  G N      A+   
Sbjct: 921 SGEVLCACQVSKSCLPGFSAADWAMAVCTQME-GKAGGSPIVAKGSG-NAKGMQGALTTA 978

Query: 893 ASFLK 897
             F +
Sbjct: 979 LEFAQ 983


>gi|154321327|ref|XP_001559979.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10]
 gi|150852076|gb|EDN27268.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10]
          Length = 952

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/961 (32%), Positives = 469/961 (48%), Gaps = 96/961 (9%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL FF+KN H ++PSSS++P NDPTL+FTN+GM  FK IF G           + +
Sbjct: 15  VRKQFLSFFEKNAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTV----GKTDDMAQ 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             RA     DLD+VG+ + HHTFFEMLGN+SFG YFK  AI +AW+LLTK + LD  RLY
Sbjct: 71  LKRAVDTQKDLDDVGKDSYHHTFFEMLGNWSFGDYFKADAIGMAWELLTKVYGLDSDRLY 130

Query: 127 ITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ D         EA  LW K +G+  D I+     DNFW M ETGPCGPCSEI +D
Sbjct: 131 VTYFEGDAENNVPADTEAKNLWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCSEIHYD 189

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +           +++    +EIWN+VF+QF++Q  +    LP   IDTGMG ER+ +VLQ
Sbjct: 190 RIGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERLVSVLQ 249

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADG 289
           +K++NYD D+F  L    ++VT  +   +             +RV+ DH+R  +F I+DG
Sbjct: 250 DKSSNYDTDVFSPLFAKIQEVTNARPYTDKYGKDDTDGIDTAYRVVADHIRLLTFAISDG 309

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLI 347
            +P NEGRGYV+RR++RR   YAR     E       +LPAL  +MG  +PE+++ +  +
Sbjct: 310 GVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVKKQQDV 369

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           +E L  E+E F +TLDRG  + +   +   K   + L+G   ++LYDT G P D+ + + 
Sbjct: 370 KEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDLTKIMA 429

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL           +E  + +AR  S  +           + +               
Sbjct: 430 EERGLETD-----EGEIEIAKEKAREASKSVKEAAHTFAKLDVHQIAELDNMGIPRPNDD 484

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYA 522
           +KF K D                +  ++ I      ++      + +   ++ D+T FYA
Sbjct: 485 AKFSKGDS---------------TGKIQLIYDGKNFLKSTADLPNDKPFGILLDKTNFYA 529

Query: 523 EAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ DTG  I DG+   ++ D Q    G  VH+  ++ G  +    ++   D   R+
Sbjct: 530 EQGGQVFDTGKIIIDGVAEFKVLDTQ-AYGGYIVHNGYMDYGDFKAGDEVICEYDELRRQ 588

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ TH+L+HAL   LG  ++Q GS +  + LRFD +H   +T  ELK +ED+ N 
Sbjct: 589 PIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHKAQVTLPELKKVEDSANS 648

Query: 642 IIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEYEDGGVH 689
            I QN  + ++ ++ + A    G  A+ G  Y + VR           +   +  +    
Sbjct: 649 YIKQNCKIYSKDVDLDIAKGIEGVRAVFGETYPNPVRVVSVGVEVDVLLAEPKNPEWRKV 708

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748
           S   CGGTHV  TG I  L IV ES I  GIRRI A TG  A        E  K +A+  
Sbjct: 709 SVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAHEVQRIAMEFGKRIAALD 768

Query: 749 -----------LKVSQGNVVG----------------RVEE-IWEEYRKLQLIHAKRKLQ 780
                      +K +Q ++                  +V++ + +E +K Q   +K  L 
Sbjct: 769 AMPHGVEKEQEVKSTQNDLNHLTISVLAKEDLKKKFTKVQKDVLDEQKKKQKAESKTALD 828

Query: 781 LNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV- 838
                 +  K  D   +++ +    +SK +  VM+  + K +   + L G S  + A V 
Sbjct: 829 TVTAYFADSKNKDSTAYIAQLPISANSKAIADVMNHFKSKAKDKTVYLFGGSASEGAVVH 888

Query: 839 -LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + V T+      +A   A   ++V+GG  GG  P      G N +K + A+A    +  
Sbjct: 889 GVYVGTDAASKGVSAEQWAAAVSEVVGGRSGGKEPTR-TGQGTNPDKIEDAVAVAEKWFA 947

Query: 898 K 898
           +
Sbjct: 948 E 948


>gi|322504973|emb|CAM45216.2| putative alanyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 962

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/965 (29%), Positives = 468/965 (48%), Gaps = 124/965 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++         D EA +LW +   L   +II     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSE+ FD+ G     GL   +++    +EIWNLVFMQFE++       LP+  +DTGMG
Sbjct: 186 PCSEVHFDRIGGRNAAGL--VNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
           LER+ ++LQ   +NYD D++  + +A +  TG +          + + +V +RV+ DH+R
Sbjct: 244 LERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++C  +G  +P 
Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPH 363

Query: 340 LI--QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHG 395
           L   +    I+  L  E++ F KT + GL   +        +   +++G  AF L+D +G
Sbjct: 364 LKDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +    G+  +D+  FN  +       +A+ +  G     K +    +     
Sbjct: 424 FPVDLTCLLAEKDGMT-VDLEGFNAEM-------KANQVSAGRVAAAKTFIDAYQL---- 471

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG----- 508
                + L+     + D                +  V AI   +    +     G     
Sbjct: 472 -----EDLKKRAIPQTDDGAKY------AWEDSTGEVLAIFDKKNSRFISLLEPGNDLGA 520

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERG---I 564
           ++V ++ + T FYAE+GGQ+ DTG  +       ++  V     G  VH   + +     
Sbjct: 521 EEVGIILNATNFYAESGGQVYDTGRLVAARDCVFEVKKV-YNVGGYVVHVGKLSKDSASP 579

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH------VSQNGSCITPDGLR 618
           +     + + +DY+ R  ++ NH+ TH L+  L  +L  +      V Q GS +T + LR
Sbjct: 580 IPLSALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVTDEMLR 639

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
           FD +H   +++ +L  +E  +N+ I   LPV    +    A   +G   + G KY D V 
Sbjct: 640 FDFSHHTKLSNEDLVRVEKLLNEKIQAGLPVYREEVPLAAASKINGLRQMFGEKYPDPVS 699

Query: 678 VVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V+S+           E E+   ++   CGGTH+S+  E     I+SE ++  G+RR+   
Sbjct: 700 VISIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVVA 759

Query: 727 TGQRA-------------RSHLMGQDEKLKSLASF---------------LK-VSQGNVV 757
           T   A                L+ ++  + ++ +                LK   + N+ 
Sbjct: 760 TKAEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNKKVGDSCVPLVLKNAMRDNID 819

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKE--LKSVMD 814
             ++++    + LQ+  AK K     + L   +  A   F  H ++E  ++   L++  D
Sbjct: 820 AAIKQMNASLK-LQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAFSD 878

Query: 815 ALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
                +   + + L+G   EK  +++ + T  +  + +AV  A+ S      G GGG+P+
Sbjct: 879 GFSSTVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGKPN 933

Query: 874 MAQSG 878
            AQSG
Sbjct: 934 AAQSG 938


>gi|28493343|ref|NP_787504.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|28572546|ref|NP_789326.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|41018202|sp|Q83GD1|SYA_TROWT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41018203|sp|Q83HV0|SYA_TROW8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|28410678|emb|CAD67064.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|28476384|gb|AAO44473.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 880

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/915 (32%), Positives = 479/915 (52%), Gaps = 70/915 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            S +R  FL+FF K GH++ PS+SLI  NDP++MFT +GM+PF   F   E P +  V +
Sbjct: 3   TSDLRLLFLDFFAKRGHKVSPSASLI-SNDPSVMFTIAGMLPFIQCFLALEPPPHPRVVS 61

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
           VQKC+R     +D+D VG+T RH TFF+M+GNFSFG YFK+ AI+ AW+ L  E DL   
Sbjct: 62  VQKCIRT----SDIDEVGKTPRHGTFFQMMGNFSFGDYFKKEAIEYAWEFLLSELDLAPD 117

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++T++ +D+E+ K W  + G+  +++   + + NFWS  + GP GPCSE+F+D     
Sbjct: 118 RLWVTIHGDDKESEKFWL-LCGVPQERVQ--SLDSNFWSTGKAGPAGPCSEVFYDLHGGP 174

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVLQEKTN 242
             G  G  +   RY+E+WNLVFMQ  + N       LPK  +DTGMGLER+A + Q    
Sbjct: 175 GPGPEGDPD---RYLEVWNLVFMQNLRDNDGHIISSLPKKCVDTGMGLERIAMITQGVGT 231

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            YD D  K ++  +  ++G +Y  +  + ++ RV+ DH+RSS  L+ADG+ P+NEGRGY+
Sbjct: 232 IYDTDELKPILDEAGYISGKRYGKDRRDDISLRVLADHIRSSLMLVADGLRPSNEGRGYI 291

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           LRR++RR++  A+LLG  E     L       M   YPEL      I++    E++ F +
Sbjct: 292 LRRLLRRSVRAAKLLGIQENCFDQLFAKAAQVMKVGYPELEGKLAEIKQVACLEEQSFSR 351

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
            L+ G  L     S     + ++GD+AF+L+DTHG P+D++ +I    GL  +D+  F  
Sbjct: 352 ALNAGTQL--LSRSMSSSKKRVSGDLAFRLHDTHGFPIDLITEIAKDSGL-DVDMDGFFT 408

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            ++EQ+ R+RA         ++        +   + F+GY++L+                
Sbjct: 409 LMKEQKDRSRAALSRSKPIVSDTT----GYEGLRSNFLGYEMLQ---------------- 448

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  V + + A+V+ G I+  A  G  V++  +QTPFYA AGGQ  D G    D   
Sbjct: 449 -------VDTKITALVKDGTILTSAKQGDCVDIALEQTPFYATAGGQEADRGFIESDNFS 501

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            ++  V     G+ VH   +  G++ +   +  ++D  NR     +H+ATH++H  +  +
Sbjct: 502 GKVVTVFSPLPGLTVHRCEIVSGLVVSGEVVRASVDSANRFAACQSHTATHVIHAVVREM 561

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
            GS   Q GS      LRFD + S   T ++   +E+  N  I   L + +     E A+
Sbjct: 562 FGSTSVQMGSYNRAGYLRFDFSCSYAPTDSQRIELEERANRAIQSCLEISSTYTTLEKAV 621

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           ASGA AL G +Y D VR+V +    GG  S  LC GTH+ ++ EI ++ +VSE+S+ +GI
Sbjct: 622 ASGAIALFGERYGDTVRMVEI----GGPWSRELCAGTHLRNSSEIAVVSLVSETSVASGI 677

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778
           RR+E +TG  A SH   +   + ++   L  ++  + G ++++ E  ++ +  L  AK K
Sbjct: 678 RRVECLTGFDAFSHFAQERALVDTVMRTLGATRQEMEGAIDDLRENLKRSKHALQTAKDK 737

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVD--------------SKELKSVMDALQKKIQSGI 824
                      +   V+ +  +I+++               ++++++V    +K ++   
Sbjct: 738 FLSAFAPRLLQEFKSVSSVRILIADLSKFLSGPLFSPFEFTAEDIRAVTLRCKKLLEEPH 797

Query: 825 IMLVGISKEKKASVLI-----VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           ++L+      +           V    +D  +A +L ++  K L  G GGGR   AQ  G
Sbjct: 798 VLLLAAVISGRVHAACSIDLSSVKLSCMDDLSANNLIKVFLKTL-DGSGGGRADFAQGAG 856

Query: 880 PNGNKADQAIAGVAS 894
            N    D A+  + +
Sbjct: 857 WNAKLLDSALDNLKA 871


>gi|115610688|ref|XP_797369.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
            (AlaRS) [Strongylocentrotus purpuratus]
 gi|115964130|ref|XP_001180526.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
            (AlaRS) [Strongylocentrotus purpuratus]
          Length = 1041

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/970 (30%), Positives = 463/970 (47%), Gaps = 91/970 (9%)

Query: 4    VSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             S +R  FL+ FQ  N H  +PSSS+IP  DPTL+FTN+GM  FK+IF G   P      
Sbjct: 78   ASQVRKKFLDHFQGLNDHVFVPSSSVIPYGDPTLLFTNAGMNQFKDIFQGTIHPDMVQNC 137

Query: 58   YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            Y+ V   QKC+R GGKHNDLD+VG+   HHTFFEMLGN+SFG +FK+ A  +A DLLT  
Sbjct: 138  YRRVVNSQKCIRVGGKHNDLDDVGKDTTHHTFFEMLGNWSFGDFFKKEACTMALDLLTSV 197

Query: 118  FDLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            + L    LY T +  + E          ++W  + G+  D+++     DNFW M   GPC
Sbjct: 198  YGLPLENLYFTYFKGNSELQLGADEATRQIWLDL-GVPEDRVLPFGMADNFWEMGAVGPC 256

Query: 170  GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            GPC+EI FD+           +      +EIWNLVFMQF +        LPK  +DTGMG
Sbjct: 257  GPCTEIHFDR-HGNRNASHLVNLGDPDVLEIWNLVFMQFYRNEAGSLHDLPKHHVDTGMG 315

Query: 230  LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
            LER+ ++LQ   ++YD DLF+ LI+  E+         + G K + +    +R + DH R
Sbjct: 316  LERLVSILQGVPSSYDTDLFQPLIKRLEETCPVRPYQGLLGEKDQDHIDTAYRAVADHAR 375

Query: 281  SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
              +  IADG  P ++ RGYV++R++RRA+ YA   L      +  L+  +   +G+ YPE
Sbjct: 376  MLTVAIADGCRPDSQKRGYVIKRVIRRAVRYATEKLQAPPGALGSLVHLVVISLGNTYPE 435

Query: 340  LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
            L +  + I + + +E+E+F  TL +G   L   ++ L    +L GD+A+K+YD +G PLD
Sbjct: 436  LEEDPVYIADVINNEEEQFLTTLKKGEKYLKKAITELSSQTVLPGDIAWKMYDAYGFPLD 495

Query: 400  IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            +   I    GL G+DI  F +     R  ++  +   G    + +     E    +    
Sbjct: 496  LTTLIADENGL-GVDIEGFEK----SRLESKEITSRGGIKNQQNLSNIKLETTDISHLHE 550

Query: 460  YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
              +       K + +    +        + + + A+      VE A SG++  ++ D+T 
Sbjct: 551  LSVKDTDDSYKYNYQ--HHRRGKYTFPRIHAHILALKTPKGFVECAASGEECAIILDRTT 608

Query: 520  FYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            FYAE GGQ  D G  +          + DVQ  + G +V H       +     + L ++
Sbjct: 609  FYAEQGGQQWDEGSFVSADDEELMFSVYDVQ--SYGGYVLHLGTTAETVSIGDHVTLYVN 666

Query: 577  YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
             + R +L  NH+ TH+L+ AL  +LG H+ Q GS + PD  RFD    K I+  +L+ I 
Sbjct: 667  EERREKLMRNHTGTHILNFALRQVLG-HIEQKGSSVAPDRFRFDFNAEKSISDRQLQQIS 725

Query: 637  DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV------- 688
               N++I+ +LPV    +  + A+   G   + G  Y D V VV + ++DG +       
Sbjct: 726  SIANNLISNSLPVHQESIPLQKALTIEGLRTMTGETYPDPVTVVCIGHQDGQLNGDMTKL 785

Query: 689  ---HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S  LCGGTHV +TG I  L IVSE  +  G+RR+  +T           ++ L+ L
Sbjct: 786  GMETSLELCGGTHVKNTGHIRRLVIVSEKLVSKGVRRLTVVTSNDVMLADYTSNKFLQRL 845

Query: 746  ASF------------------LKVSQGNVVG-----------------RVEEIWEEYRKL 770
            +                    +  S  ++V                  RV ++  + +K 
Sbjct: 846  SQLETEVYNVSTSNNPEMRDDVIASLESLVEDLEGAHIDLWKKREMNRRVADMQNKLKKA 905

Query: 771  QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              ++ K  ++   + L      K ++V  +      +D+K L  V  +L+ +  S  +ML
Sbjct: 906  DKLNKKSVIKQVAKRLHEEFREKKSEVCLVGVTGDSIDNKVLLKVQQSLEDEFGSTPLML 965

Query: 828  VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
            +   KE KA  +  V ++L+ R  +A          +  G G G    A+  G   +  +
Sbjct: 966  LSTDKE-KAYCICRVPQELVSRGLHASQWMDSVMGEME-GKGFGSETFARGRGLAPSSLE 1023

Query: 887  QAIAGVASFL 896
            +      S++
Sbjct: 1024 ECAKKARSYV 1033


>gi|258538952|ref|YP_003173451.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
 gi|257150628|emb|CAR89600.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705]
          Length = 710

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/734 (37%), Positives = 410/734 (55%), Gaps = 58/734 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++ VG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 64  TNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKGTKELWRKV-GVADDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 176 GQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y     + V+ ++I DH R+ +F I DG
Sbjct: 234 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFAIGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 294 ALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + SE+ RF +TLD G+ LL+ +++ L ++  + ++G  AFKL+DT+G P+++  +    
Sbjct: 354 VIESEEARFRQTLDAGVNLLNQIVAELKQNGKKEISGADAFKLFDTYGFPVEMTNEYAED 413

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D+  F + +  QR RAR       S  ++     L +    ++F G+  L    
Sbjct: 414 EGLK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTGWTELDHKH 470

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 + ++AIV   ++ +E  +GQ  +++FD+TPFYAE GGQ
Sbjct: 471 ----------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYAEMGGQ 507

Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           + D G        +  ++TDVQ    G  +H   V +G L       L++D   R+++S+
Sbjct: 508 VADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTV-KGKLTKGQPYWLSVDRLRRKKVSL 566

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E  VN  I  
Sbjct: 567 NHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVNQKIWD 626

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGTH ++T  +
Sbjct: 627 ALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPTNTNAL 681

Query: 706 MLLYIVSESSIRAG 719
            L  I SES +  G
Sbjct: 682 GLFKITSESVLAQG 695


>gi|162447763|ref|YP_001620895.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|205829962|sp|A9NGN9|SYA_ACHLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|161985870|gb|ABX81519.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 851

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/935 (34%), Positives = 474/935 (50%), Gaps = 126/935 (13%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR T+L FF+  GH + PS+SLIP +DPTL++ N+G+ P K  F G E P  + +
Sbjct: 1   MTSEQIRQTWLNFFKDKGHIIEPSASLIPVDDPTLLWINAGVAPLKKYFDGTETPKSKRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T +QK +R     ND+DNVG+T RHHTFFEM+GNFS G YFK+ AI+  ++LLT  K FD
Sbjct: 61  TNIQKSIRT----NDIDNVGKTARHHTFFEMMGNFSIGDYFKKEAIEFGFELLTSPKYFD 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +   +LY+T Y  D EA   W K+ G+  D +I +    NFW +   GP GP +EIFFD+
Sbjct: 117 IPLDKLYMTYYPTDVEAKNTWLKL-GVKEDHLIPV--EGNFWEIGA-GPSGPDTEIFFDR 172

Query: 180 GECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G       P       E ER+IEIWN+VF Q+    K    E   LP  +IDTG GLER 
Sbjct: 173 GTSYDLRGPELIRDDIENERFIEIWNIVFSQYNADPKLKRSEYKELPNKNIDTGAGLERF 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A VLQ    N++ DL   +I   E ++G+KY+G   +  +VI DH+++  F I+DG   +
Sbjct: 233 ACVLQGTKTNFETDLHYPVILKVESLSGVKYDGQ--MAFKVISDHIKTLVFAISDGANLS 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NEGRGYVLRRI+RRA+ Y + +G+  P +  L+  +   M + Y  LI+  +++++ +  
Sbjct: 291 NEGRGYVLRRILRRAVKYGKSIGFDAPFLHLLVDTVVDMMSNFYTNLIETAVIVKKIILK 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E+E+F  T+  G   L   +    KD  L+G+ AFKLYDT+G P+++  +     G+  +
Sbjct: 351 EEEKFFSTILDGEKHLLQSI----KDGKLSGEDAFKLYDTYGFPIELTIEYAEEHGIT-V 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           DI  FN+ALE Q+SR+R       S   +    +L      ++F+GYD L+         
Sbjct: 406 DIKGFNEALEVQKSRSRDARKVTHSMKGQD--EALLNFDVPSEFVGYDYLQT-------- 455

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           S V  +  QG             +V D+TPFYA +GGQ+ DTG 
Sbjct: 456 ---------------ESKVIKVFDQG-------------IVLDKTPFYANSGGQISDTGS 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
             G    L + DV K   G  +H  ++E         ++  ++   R     NH+ATHLL
Sbjct: 488 ING----LVVRDVIKLPHGQHLH--LIETDAFTEGDEVLCIVNQDKRHHTMKNHTATHLL 541

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           + AL   LGSHV Q GS      L FD+ H + I   E+ ++E  V   I + + VVT +
Sbjct: 542 NQALKDTLGSHVKQQGSYNGDLKLTFDINHYETIKDEEILTVEKIVQQKIKEQIDVVTHV 601

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +  ++A   GAA   G KY D VRVV     D G  S   CGGTHV +T +I    I S 
Sbjct: 602 LPIDEAKKLGAAMQFGEKYGDIVRVV-----DVGSWSMEFCGGTHVKNTSDIKNFMITSV 656

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771
            SI +G  R EAITGQ     L    + +++L   +       + +++ + +E   L+  
Sbjct: 657 ESIGSGTYRFEAITGQ----VLSQVKKIVQNLLDMI----HQHIEKIKSL-DENHNLKPL 707

Query: 772 ---------LIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDS--------------- 806
                    +I+ +   Q ++ E     K  +   +  II + D+               
Sbjct: 708 PELTGSYQDIINLRLYNQYISNESKVVEKQLEAKLIDQIILQADTFIPKTIEPTTYIYSD 767

Query: 807 ----KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
                 LK ++D L  KI++  ++L+ IS E KAS L+  + +      A ++     KV
Sbjct: 768 NLPQSSLKPLIDVLYDKIKADTVVLLNIS-EDKASYLVKSSVNE-----ARNVINELNKV 821

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L  G GGG+P  AQ G        QA+  V  FLK
Sbjct: 822 L-DGRGGGKPDFAQGG-------TQALDKVQMFLK 848


>gi|154337657|ref|XP_001565061.1| alanyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 962

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/965 (29%), Positives = 467/965 (48%), Gaps = 124/965 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           VS +R  F+++F+K GH  +P S + P +DPTL+F N+GM  FK +F G   P       
Sbjct: 8   VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           + V   Q C+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ +
Sbjct: 68  KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + +LY+T ++         D EA +LW +   L   +II     DNFW M +TGPCG
Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185

Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           PCSE+ FD+ G     GL   +++    +EIWNLVFMQFE++       LP+  +DTGMG
Sbjct: 186 PCSEVHFDRIGGRNAAGL--VNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
           LER+ ++LQ   +NYD D++  + +A +  TG +          + + +V +RV+ DH+R
Sbjct: 244 LERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  + DG++P + GRG+VLRRI+RRA+ Y  + LG        L+ ++C  +G  +P 
Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPH 363

Query: 340 LI--QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHG 395
           L   +    I+  L  E++ F KT + GL   +        +   +++G  AF L+D +G
Sbjct: 364 LKDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYG 423

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            P+D+   +    G+  +D+  FN  +       +A+ +  G     K +    +     
Sbjct: 424 FPVDLTCLLAEKDGMT-VDLEGFNAEM-------KANQVSAGRVAAAKTFIDAYQL---- 471

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSG----- 508
                + L+     + D                +  V AI   +    +     G     
Sbjct: 472 -----EDLKKRAIPQTDDGAKY------AWEDSTGEVLAIFDKKNSRFISLLEPGNDLGA 520

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERG---I 564
           ++V ++ + T FYAE+GGQ+ DTG  +       ++  V     G  VH   + +     
Sbjct: 521 EEVGIILNATNFYAESGGQVYDTGRLVAARDCVFEVKKV-YNVGGYVVHVGKLSKDSASP 579

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH------VSQNGSCITPDGLR 618
           +     + + +DY+ R  ++ NH+ TH L+  L  +L  +      V Q GS +  + LR
Sbjct: 580 IPLSALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVMDEMLR 639

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
           FD +H   +++ +L  +E  +N+ I   LPV    +    A   +G   + G KY D V 
Sbjct: 640 FDFSHHTKLSNEDLVRVEKLLNEKIQAGLPVYREEVPLAAASKINGLRQMFGEKYPDPVS 699

Query: 678 VVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V+S+           E E+   ++   CGGTH+S+  E     I+SE ++  G+RR+   
Sbjct: 700 VISIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVVA 759

Query: 727 TGQRA-------------RSHLMGQDEKLKSLASF---------------LK-VSQGNVV 757
           T   A                L+ ++  + ++ +                LK   + N+ 
Sbjct: 760 TKAEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNKKVGDSCVPLVLKNAMRDNID 819

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDSKE--LKSVMD 814
             ++++    + LQ+  AK K     + L   +  A   F  H ++E  ++   L++  D
Sbjct: 820 AAIKQMNASLK-LQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAFSD 878

Query: 815 ALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
                +   + + L+G   EK  +++ + T  +  + +AV  A+ S      G GGG+P+
Sbjct: 879 GFSSTVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGKPN 933

Query: 874 MAQSG 878
            AQSG
Sbjct: 934 AAQSG 938


>gi|218516688|ref|ZP_03513528.1| alanyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 588

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/614 (56%), Positives = 436/614 (71%), Gaps = 27/614 (4%)

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           CVRAGGKHNDLDN G T  H TFFEMLGNFSFG YFKE AI+LAW L+T+ F L + RL 
Sbjct: 1   CVRAGGKHNDLDNFGYTACHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGLPKHRLL 60

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +TVY EDEEA  LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQGE + GG
Sbjct: 61  VTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQGENVWGG 120

Query: 187 LPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245
            PGS+E +G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ   + +D
Sbjct: 121 PPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFD 180

Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305
            DLF+ L  A E   G+K EG    +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIM
Sbjct: 181 TDLFRTLTGAIEDAVGVKAEG--SASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIM 238

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           RRAM +A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF KTL+RG
Sbjct: 239 RRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERG 298

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           L LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F  A++ Q
Sbjct: 299 LSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQ 357

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
           ++ AR+H  G G   TE +WF L+EK+GAT+F+GYD                        
Sbjct: 358 KAEARSHWAGSGEKATETVWFELREKHGATEFLGYDT----------------------- 394

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG    D  +++I+D
Sbjct: 395 EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHGKIEISD 454

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
            QKK EG+FVH   V  G  +T  ++VLT+D+  R +L  NHSATHLLH AL  +LG+HV
Sbjct: 455 TQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHV 514

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P+ LRFDV+H KP+T+ ELK +E+  N+I+ QN PV TR+M+ +DAIA GA 
Sbjct: 515 AQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDAIAEGAM 574

Query: 666 ALLGTKYNDRVRVV 679
           AL G KY D VRVV
Sbjct: 575 ALFGEKYGDEVRVV 588


>gi|294053724|ref|YP_003547382.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293613057|gb|ADE53212.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 941

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/972 (31%), Positives = 456/972 (46%), Gaps = 133/972 (13%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
           M + S IR +FL+FF+   H  +PS+SL+P   P L+FTN+GM  F   F G EK  +  
Sbjct: 5   MKS-SEIRQSFLDFFKSKQHTTVPSASLMPQ-SPGLLFTNAGMNQFVPYFLGTEKAPFDP 62

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK+ AI+ +W+L+ + +
Sbjct: 63  PRAADTQKCIRAGGKHNDLEDVGYDTYHHTFFEMLGNWSFGNYFKQEAIEWSWELIVETW 122

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWK---KISGLSAD-KIIRITTNDNFWSMAET 166
            +   RLY TVY   E        EA+ +W    + +GL     II     DNFW M ET
Sbjct: 123 GVPANRLYATVYAPSEGDPSAFDQEAYDIWSVLFEKAGLDPKVHIINGNVKDNFWMMGET 182

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSE+  D            + + +  IEIWNLVF+Q+  +       LP   +DT
Sbjct: 183 GPCGPCSELHVDLTPKGDSQGKLVNMDSDLCIEIWNLVFIQYNAEADGSFRDLPAKHVDT 242

Query: 227 GMGLERMATVLQE---------KTNNYDIDLFKHLIQASEQVTGMKYEG----------- 266
           GMG ER  +++Q          K  NY  D+F+ + +  EQ++G  Y+            
Sbjct: 243 GMGFERACSLIQNTKGFTDFSEKPTNYATDVFQPIFRTLEQLSGKTYKDIYPEAADCDKS 302

Query: 267 ------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT-- 318
                    +  RVI DH+R+ SF +ADGIL  N GR YVLRRI+RRA+ Y R LG++  
Sbjct: 303 KLSQEMKEAIAFRVIADHIRTLSFSLADGILLGNTGRNYVLRRILRRAVRYGRTLGFSSG 362

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
           E  +  L+  L  E GS +PEL +    ++E L+ E+  F +TLDRGL + +   +    
Sbjct: 363 ETFLPKLVDTLVEEFGSVFPELKERAKAVKENLQREEASFNETLDRGLAMFEDEAAKTKG 422

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
              L+G+ AFKLYDT+G P+D+ Q +   RG+  +D+ +F + +E              +
Sbjct: 423 S--LDGEFAFKLYDTYGFPIDLTQLLCAERGIE-VDMETFEKHMEA------QRERARAA 473

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
            T + +  +      +T+F G++    +                                
Sbjct: 474 RTQQLVRAADIATEASTEFTGFEEDEST-------------------------------- 501

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            +++E       + V+ D+TPFY E GGQLGD G    +G    +T VQ+ +      H+
Sbjct: 502 AKVLELHTQDDALLVITDRTPFYVEMGGQLGDQGTLTVNGTTYPVTAVQQLSAA--RAHS 559

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     ++    + L +D   RR +  +H+ATHLLH AL  ++ +  +Q GS ++   LR
Sbjct: 560 LPTDAAVKVGDEVTLALDPTRRRPIEGHHTATHLLHWALHEVVSTDAAQQGSMVSRTRLR 619

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVR 677
           FD   S  ++  +L +IE  VN  I    PV  + +   D           G KY D VR
Sbjct: 620 FDFN-SSALSQDQLDAIETKVNACIEAGDPVSWKEVPHTDVKDRKDVQQFFGDKYGDLVR 678

Query: 678 VVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VV +    E    +S  LCGGTHV +T +I L  I SE +I +GIRRIEA+ G  A    
Sbjct: 679 VVQIGGQPEQLDGYSMELCGGTHVRNTKDIGLFKIKSEGAIASGIRRIEAVCGTAAYDWT 738

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEI-----------------------WEEYR--KL 770
               EK       L+     +  ++E +                        +  +  K 
Sbjct: 739 RSVVEKANIEREELRTKLEGINQKLEALGADSIKYPQFPHIMIGMLAEGNFEQRNKVFKD 798

Query: 771 QLIHAKRKLQLNVEDLSCHKI----------------ADVNFMSHIISEVDSKELKSVMD 814
            L H +   +  VE     K                  D++    + +E  +  L+ +++
Sbjct: 799 TLAHVQGLKEATVEADKALKKAQAAGAAKMANAILAEQDLSGNLVLKAEGPAALLQELIN 858

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            L+++  +G    +    E+     +       +   A  L +  A  + GG GGG+P M
Sbjct: 859 GLKQQQFAGAAFFIVDDGERLHLGALCGETAKGNGLMAGKLIQQLAP-IAGGKGGGKPDM 917

Query: 875 AQSGGPNGNKAD 886
           A+   P  +KAD
Sbjct: 918 ARGAAPERDKAD 929


>gi|289448204|ref|ZP_06437948.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium
           tuberculosis CPHL_A]
 gi|289421162|gb|EFD18363.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium
           tuberculosis CPHL_A]
          Length = 828

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/846 (34%), Positives = 439/846 (51%), Gaps = 69/846 (8%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKI 143
           FF+M  NFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW+++
Sbjct: 7   FFQMGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEV 66

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWN 202
           +GL A++I R    DN+WSM   GPCGP SEI++D+G    P G P  SE+  RY+E+WN
Sbjct: 67  AGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWN 124

Query: 203 LVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
           LVFMQ E+     +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + ++   
Sbjct: 125 LVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTV 184

Query: 257 EQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
            +V    Y+     + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+
Sbjct: 185 ARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAK 244

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           LLG    ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V 
Sbjct: 245 LLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVA 304

Query: 374 SHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           S   K    +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A
Sbjct: 305 SSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKA 363

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            +        +   +      GAT+F G+D LR                         + 
Sbjct: 364 DAAARKHAHADLSAYRELVDAGATEFTGFDELRS-----------------------QAR 400

Query: 492 VKAIVQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----I 539
           +  I   G+ V          A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     
Sbjct: 401 ILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAA 460

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           R  +TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H AL  
Sbjct: 461 RAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQ 520

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T     + A
Sbjct: 521 VLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKA 580

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A GA AL G  Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G
Sbjct: 581 KAMGAIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSG 636

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RR+EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++
Sbjct: 637 VRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRM 696

Query: 780 QL-----NVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                          +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ 
Sbjct: 697 ASVRAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEG 756

Query: 834 KKASVLIVVTEDLLD---RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           +  +V   V  +         A DL +  A  +  G GGG+  +AQ  G N    D A+ 
Sbjct: 757 ESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALD 815

Query: 891 GVASFL 896
            V S +
Sbjct: 816 AVRSEI 821


>gi|331703175|ref|YP_004399862.1| alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801730|emb|CBW53883.1| Alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 896

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/930 (30%), Positives = 469/930 (50%), Gaps = 98/930 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF    H  L + SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   STNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT  K FD+
Sbjct: 65  NSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKKYFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+G
Sbjct: 121 DKNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRG 179

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       G        E +RYIE+WN+VF QF          LP+ +IDTG GLER A+
Sbjct: 180 EIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSS 282
           + Q    N++ D+F   I+  E++T    KY  +N  N            +VI DH+R++
Sbjct: 240 IFQNTPTNFETDIFYPTIKKVEELTNDQFKYSIDNYFNPNKKQTRINTAFKVIADHIRAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
            F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP LI 
Sbjct: 300 VFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLID 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P++   
Sbjct: 360 KKTLVEQTIKDEEEKFLKTLSKGYDLLENII---KTKNTVSDKDALLLFESYGFPIEQTI 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +I     +  +D+  F + LE+ +   R     L +   +   F+  +    ++F G+  
Sbjct: 417 EISELSNVT-VDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFTGWSE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + V  +    + VE     Q+V V+ D+TPFYA
Sbjct: 474 TSRDN----------------------AKVIYMFTDQKQVESITD-QEVFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V +G L+    +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKV-QGTLKVNDLINCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LG+ V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKIDRQTYFCSLEESVNKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS-----------FL 749
           T EI    I    S  +G+ RI+ +T  +    +L  Q +  K  A             L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744

Query: 750 KVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKR--------KLQLNVEDLS 787
           K  Q            + +     ++++ ++ +++   + K+        KL    +   
Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYKDLTP 804

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                ++N +    ++++ K+LK + D L+ K    I++L+  + E    V++ V++ L 
Sbjct: 805 SLNKDNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENN-FVVVAVSQSLQ 863

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +++ A+D+            GGG  ++AQ 
Sbjct: 864 NKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|297737925|emb|CBI27126.3| unnamed protein product [Vitis vinifera]
          Length = 1026

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/1013 (29%), Positives = 448/1013 (44%), Gaps = 126/1013 (12%)

Query: 4    VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
             + +R TF+ FF+   H    SS ++P NDPTL+F N+GM  FK IF G   P       
Sbjct: 13   ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 72

Query: 59   QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK  
Sbjct: 73   TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKAK 132

Query: 118  ---FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
               + L   R+Y T +  DE        EA  +W K   L    ++     DNFW M +T
Sbjct: 133  NLVYKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDT 190

Query: 167  GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
            GPCGPC+EI FD+           + +    IEIWNLVF+QF +++      LP   +DT
Sbjct: 191  GPCGPCTEIHFDRI-GNRDAASLVNNDDPTCIEIWNLVFIQFNRESDGSLKSLPAKHVDT 249

Query: 227  GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVD 277
            GMG ER+ ++LQ K +NYD D+F  +  A +Q TG +               + +RV+ D
Sbjct: 250  GMGFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVAD 309

Query: 278  HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
            H+R+ SF IADG  P NEGR YVLRRI+RRA+ Y   +L   E      +  +   MG  
Sbjct: 310  HIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDV 369

Query: 337  YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
            +PEL Q ++ I E +  E+  FGKTL +G+         + + +ILNG   + +      
Sbjct: 370  FPELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEV-QGKILNGQEFYNIQVFTNF 428

Query: 397  PLD---------------------------------------------IMQDILCARGLA 411
              D                                             ++  ++      
Sbjct: 429  IHDSQKCCNHFKEIFLWVGGAFWPSGSVEVVHFSDILMLFQDVEDGNKLVSLMIIKDAFV 488

Query: 412  GIDIISF----NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
              D   F     Q + E+R           +    +      +   A   I  D    S 
Sbjct: 489  LWDTYGFPLDLTQLMAEERGLIVDVQGFNAALDEARERSRSAQNKQAGGTIVMDADATSA 548

Query: 468  FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
              K                   S++KAI    E +E A +G +V +V + T FYAE GGQ
Sbjct: 549  LHKRGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLETTSFYAEQGGQ 608

Query: 528  LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--GILRTEMSLVLTIDYQNRRQLSI 585
            + DTG   G     Q+ +VQ    G  +H        G       ++  +DY  R+ ++ 
Sbjct: 609  IFDTGSLEGTSGSFQVCNVQIY-GGFILHIGSFTEASGRFSVGDKVICKVDYDRRKVIAP 667

Query: 586  NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            NH+ TH+L+ AL  +LG+HV Q GS + P+ LRFD +H KP+    L+ IE  VN+ I  
Sbjct: 668  NHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLRKIESIVNEQIDA 727

Query: 646  NLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGGVHSSAL 693
             L V ++  +  DA + +G  A+ G  Y D VRVVS+             E     S+ L
Sbjct: 728  ELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADPGNEKWLSISAEL 787

Query: 694  CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK--- 750
            CGGTH+S+T E     ++SE  I  GIRRI A+T   A   +       + +    K   
Sbjct: 788  CGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDVAFKAIELARSLEQEVDDASKTEG 847

Query: 751  ---------------------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-- 787
                                   + ++  ++  + ++ RK Q   A+  +Q  V+  +  
Sbjct: 848  ISLEKKVASLRSRVDSAPIPAARKADLRAKISLLQDQVRKAQKKFAEENIQKAVKAATDM 907

Query: 788  ---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                        +SH+   +D+  ++  +  + ++    +++        KA V   V +
Sbjct: 908  AQLAASDGKTFCISHVDVGLDTTAVREAVLKVIEQKGISVMIFSTDETTNKAVVYAGVPQ 967

Query: 845  --DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              D   +    +    +   L G  G G+  +AQ  G + +   +A+    +F
Sbjct: 968  KGDKAKQLEVSEWLTAALGPLKGRCGKGKGGLAQGQGTDASHVKEAMDVAENF 1020


>gi|222612529|gb|EEE50661.1| hypothetical protein OsJ_30891 [Oryza sativa Japonica Group]
          Length = 901

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/921 (31%), Positives = 432/921 (46%), Gaps = 94/921 (10%)

Query: 43  MVPFKNIFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P             QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTAAPDAPLGRLRRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFKE AI  AW+LLT+ + L   R+Y T +  DE        E+  +W K   L  +
Sbjct: 61  FGDYFKEEAIGFAWELLTQVYKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKE 118

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
           K++     DNFW M +TGPCGPC+EI FD+           + +    IEIWNLVF+QF 
Sbjct: 119 KVLPFGCKDNFWEMGDTGPCGPCTEIHFDRV-GNRDAASLVNNDDPTCIEIWNLVFIQFN 177

Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT--------- 260
           ++       LP   +DTGMG ER+ ++LQ K +NYD D+F  +  A  Q+          
Sbjct: 178 READCTLRPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSG 237

Query: 261 --GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGY 317
             G +      + +RV+ DH+R+ SF IADG  P NEGR YVLRRI+RRA+ +    L  
Sbjct: 238 KVGPEDVDKVDMAYRVVADHIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKA 297

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            +     L+      MG  +PEL   +  I++ ++ E+E F  TL +G          + 
Sbjct: 298 KQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVK 357

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           +     G  AF L+DT+G P+D+ + +    GL+ +D   F+ A+EE R +AR      G
Sbjct: 358 ES---GGTDAFVLWDTYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAG 413

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
                    S+     AT       LR       D          D      S+VKAI  
Sbjct: 414 EN-------SIVLDANATA-----QLRNQGLASTDDSPKYGYKDND------SVVKAIYT 455

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             E V  A   +   +V + T FYAE GGQ+ DTG   G      +T+VQ    G  +H 
Sbjct: 456 GSEYVSAASGDEDFGLVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQ-VFAGYVLHM 514

Query: 558 AIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
               +G   L     +   +DY  R  ++ NH+ TH+L+ AL  ILG HV Q GS + P+
Sbjct: 515 GSFTKGSKALSVGDKVACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPE 574

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674
            LRFD +H KP+   +L+ IE  VN  I   L V  R +   DA   +G  A+ G  Y D
Sbjct: 575 KLRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPD 634

Query: 675 RVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            VRVVSV           E ++    S+ LCGGTH+ +T E     ++SE  I  G+RRI
Sbjct: 635 PVRVVSVGRKVEDLLANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRI 694

Query: 724 EAITGQRARSHLMG------------------QDEKLKSLASFLK------VSQGNVVGR 759
            A+T + A   +                     ++ + S+ S L         + ++ GR
Sbjct: 695 TAVTAKHASDAIKDASSIDSEINEASKLEGAILEKTIASIKSKLDTALIPAARKADLKGR 754

Query: 760 VEEIWEEYRKLQL----IHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMD 814
           V ++ +E RK +      + ++ ++  ++           F ++H+   +D+  ++  + 
Sbjct: 755 VSKLEDELRKAKKKMGEENIQKAVKFAIDAAQTALSEGKRFCVAHVDVGLDTSAIREAVI 814

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874
            ++ +    I++        KA +   V     +    +D    S   L G GGGG+  +
Sbjct: 815 KVKDQKDLPIMLFSTDEATNKAVIYAGVPPSAANSLKVLDWLTPSIAPLKGKGGGGKNGI 874

Query: 875 AQSGGPNGNKADQAIAGVASF 895
           AQ  G   ++  +A+      
Sbjct: 875 AQGQGTEASQLKEAMEVATQI 895


>gi|83319899|ref|YP_424149.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|123535930|sp|Q2SSW4|SYA_MYCCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|83283785|gb|ABC01717.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 896

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/930 (30%), Positives = 465/930 (50%), Gaps = 98/930 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   STNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT    FD+
Sbjct: 65  NSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+G
Sbjct: 121 DKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIFYDRG 179

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       G        E +RYIE+WN+VF QF          LP+ +IDTG GLER A+
Sbjct: 180 EIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNI-----------VNHRVIVDHLRSS 282
           + Q    N++ D+F   I+  EQ+T    KY  +N               +VI DH+R++
Sbjct: 240 IFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
            F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP L+ 
Sbjct: 300 VFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLVD 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P++   
Sbjct: 360 KKSLVEQTIKDEEEKFLKTLSKGYDLLENII---KTKNTVSDKDALLLFESYGFPIEQTI 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +I     +  +DI  F + LE+ +   R     L +   +   F+  +    ++F G+  
Sbjct: 417 EISELSNVT-VDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKV--ESEFTGWSE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           +                          + V  +    + VE     Q+V V+ D+TPFYA
Sbjct: 474 ISRDN----------------------AKVIYMFTDQKQVESITD-QEVFVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D+G    D ++  + DVQ+      +H   V +  L+    +   +D + R  
Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKV-QDTLKLNDLINCRVDEEKRIY 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS TH++H+AL  +LGS V Q+GS    +GLR D T+ +  T+ EL   ++ V + 
Sbjct: 570 TMKNHSGTHMIHYALREVLGSSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629

Query: 643 IAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I   +   T   + E+++    A A    KY++ VRV+       G  SS LCGGTHV++
Sbjct: 630 IKNKVDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLAS-----------FL 749
           T EI    I    S  +G+ RI+ +T  +    +L  Q +  K  A             L
Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744

Query: 750 KVSQGN---------VVGR-----VEEIWEEYRKLQLIHAKR--------KLQLNVEDLS 787
           K  Q            + +     ++++ ++ R L   + K+        KL    +   
Sbjct: 745 KNDQLENIYLEIKNITINKDNLILIKDLLDKLRDLNKDYDKKVNDLITANKLLKYKDLTP 804

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                +VN +    ++++ ++LK + D L+ K    I++L+  + E    +++ V++ L 
Sbjct: 805 SLNKDNVNEIKLETTDLNIRDLKQLADDLRNKYNDLIVILLSSTNENN-FIVVAVSQSLQ 863

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +++ A+D+            GGG  ++AQ 
Sbjct: 864 NKYKAIDIFNNLEGYET--KGGGNANLAQG 891


>gi|327262296|ref|XP_003215961.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Anolis
           carolinensis]
          Length = 988

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/965 (29%), Positives = 456/965 (47%), Gaps = 85/965 (8%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
           + + +R +F+ FFQ+  GH+++ SS + P  DP L+F N+GM  FK IF G   P     
Sbjct: 36  SSARVRQSFIRFFQEKYGHQVVASSPVRPRADPGLLFVNAGMNQFKPIFLGTADPRSEMT 95

Query: 58  -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A ++AW+LLT+
Sbjct: 96  RYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACKMAWELLTE 155

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            +++ +  LY+T +          DEE  ++W    GLS   ++     DNFW M ++GP
Sbjct: 156 VYEIPKDHLYVTYFGGNAALGLSADEETREIWLN-QGLSPSHVLPFEMKDNFWEMGDSGP 214

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D            ++     +EIWNLVFMQ+ ++       LP+  +DTGM
Sbjct: 215 CGPCTEIHYDHIGGGRNAAAMVNKGNPDVVEIWNLVFMQYNREADGRLHQLPQHHVDTGM 274

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
           GLER+ T+LQ K +NYD DLF  ++ A  +         + G    G   + +RV+ DH+
Sbjct: 275 GLERLMTILQNKRSNYDTDLFTPILDAIHKGCGGPNYQGLVGEADAGGVNMAYRVVADHV 334

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLR I+RRA+ + + +L      + +L+P +   +G AYP
Sbjct: 335 RTLSICIADGVYPGMSGAELVLRHILRRAVRFCSEVLHAPPGFLANLVPVVVEILGDAYP 394

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           EL +    +   +   +  F  +L +G  +++  L  +   ++   ++A+ LY   G PL
Sbjct: 395 ELHRDTDKVMNIISENEAAFLSSLMQGRHVINRALQQMDHSKVFPVEIAWSLYSNLGFPL 454

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D++  +L  +G+  +D  + +   +E   R +A S    S         L + +   Q  
Sbjct: 455 DLIALMLEEKGV-QLDKAALDCLAQEDAER-KARSQQEQSARM------LLDVHSLAQLR 506

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQ 517
              +       K   ++   K    +     + V  + + G + +E    GQ+  V+ DQ
Sbjct: 507 RDGVPSTDDSFKYAYEI--GKDGRYVFKQCKATVLMLYKDGSLQKEVSGGGQRCGVLLDQ 564

Query: 518 TPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           T FYAE GGQ  D G  +  G +     +  VQ  A  +   H ++    L+    + L 
Sbjct: 565 TCFYAEQGGQAPDQGYMVCGGQQDTFFPVVSVQVSAGYVI--HEVIASEALKAGDQVQLF 622

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D  +R    +NH+ATHLL+  L  +LG    Q GS +T + LRFDV    P+ +  L+ 
Sbjct: 623 VDEAHRMACMVNHTATHLLNFVLRQVLGESTEQCGSHVTAEHLRFDVRTQVPVKTEHLQE 682

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----------RVRVVSVEYE 684
           +E+ + +II +N  V T  +  +          L   Y D            R +  E +
Sbjct: 683 VENVIQEIIKKNEVVCTEEVPLKLTSDIQGLRKLDDVYPDVVRVVSVGVPVKRALVRESK 742

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D    S  LC GTH+  TG I    I+SE  +  GI  I A+TG++A+          K 
Sbjct: 743 DAMHTSVELCCGTHLLRTGAIQDFTIISERQLVKGISHIIALTGEQAKKAREDGRTFAKE 802

Query: 745 LASF-----LKVSQGNVVGRV---------------------EEIWEEYRKLQLIH--AK 776
           + S      L  +  +   R+                      E+    + LQ     A 
Sbjct: 803 VESLTIRVKLGGATIDEAQRLSKEVGYLTVTVYNTAMPHWQKRELQATLKALQRAANTAV 862

Query: 777 RKLQLNVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832
           RKL+  +     HK +A  +  + I+  +       L  V++ L  KI +  +ML+    
Sbjct: 863 RKLETRLAAEEAHKLLAKYSREAIIVDTIAVESPSILMKVVNQLCAKIPAASVMLLSPQT 922

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             +      V+++ L  F+A D A      + GG  GG   +A+  G N N   +A+A  
Sbjct: 923 SGQVFCACQVSKNSLPTFSASDWALSVCTQM-GGKSGGSEVVAKGMG-NTNGLQRALATA 980

Query: 893 ASFLK 897
             + K
Sbjct: 981 QEYAK 985


>gi|260201682|ref|ZP_05769173.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T46]
          Length = 819

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/843 (34%), Positives = 437/843 (51%), Gaps = 69/843 (8%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146
           M GNFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW++++GL
Sbjct: 1   MAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVF 205
            A++I R    DN+WSM   GPCGP SEI++D+G    P G P  SE+  RY+E+WNLVF
Sbjct: 61  PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVF 118

Query: 206 MQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           MQ E+     +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V
Sbjct: 119 MQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARV 178

Query: 260 TGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
               Y+     + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG
Sbjct: 179 AARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLG 238

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
               ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V S  
Sbjct: 239 IDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASST 298

Query: 377 GKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            K    +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A + 
Sbjct: 299 KKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAA 357

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                  +   +      GAT+F G+D LR                         + +  
Sbjct: 358 ARKHAHADLSAYRELVDAGATEFTGFDELRS-----------------------QARILG 394

Query: 495 IVQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQ 542
           I   G+ V          A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  
Sbjct: 395 IFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAA 454

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG
Sbjct: 455 VTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLG 514

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A 
Sbjct: 515 PNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAM 574

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G  Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR
Sbjct: 575 GAIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRR 630

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL--- 779
           +EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++   
Sbjct: 631 VEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASA 690

Query: 780 --QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                       +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  
Sbjct: 691 RAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQ 750

Query: 837 SVLIVVTEDLLD---RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           +V   V  +         A DL +  A  +  G GGG+  +AQ  G N    D A+  V 
Sbjct: 751 TVPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVR 809

Query: 894 SFL 896
           S +
Sbjct: 810 SEI 812


>gi|255084804|ref|XP_002504833.1| alanyl-tRNA synthetase [Micromonas sp. RCC299]
 gi|226520102|gb|ACO66091.1| alanyl-tRNA synthetase [Micromonas sp. RCC299]
          Length = 945

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/758 (34%), Positives = 395/758 (52%), Gaps = 60/758 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
              IR TFL+FF+   H ++PSS ++P +DPTL+F N+GM  FK  F G   P       
Sbjct: 9   AQRIRQTFLDFFEGKEHTVVPSSPVVPHDDPTLLFANAGMNQFKPCFLGTADPKGPLAKL 68

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
              T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FKE AI  AW+LLTK +
Sbjct: 69  KRATDTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKEEAIGWAWELLTKVY 128

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY T +          D+EA ++W K   L   K++     DNFW M + GPCG
Sbjct: 129 MLPEDRLYATYFGGDPAQGLPPDDEAKEIWLKY--LPPHKVLPFDCKDNFWEMGDVGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI +D+           + +    +EIWN+VF+QF ++       LP   +DTGMG 
Sbjct: 187 PCTEIHYDRIGG-RDASDLVNMDDPNCLEIWNVVFIQFNREEGGVLKPLPAKHVDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281
           ER+A++LQ K +NYD D+F  +  A + VTG +           G   + +RV+ DH+R+
Sbjct: 246 ERLASILQGKMSNYDTDVFMPIFDAIQAVTGAEPYAGKLGAEDVGEKDMAYRVVADHVRT 305

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340
            +F IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+  +    G  +PE+
Sbjct: 306 LTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFATLVKTVVQLFGDVFPEI 365

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPL 398
           ++ +  + E +  E+E FG+TL +G+     + +   ++  + ++G  AF L+++ G P+
Sbjct: 366 VKEEKRVTEIIAEEEESFGRTLLKGVEQFKKIAAKAKEEGRDTVSGAEAFLLWESFGFPV 425

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+++ +    G+  +D   F +A +E + ++RA     G           ++     +  
Sbjct: 426 DLVEIMCEENGMK-VDNAGFEEAFKEAQEKSRAAGKKGGG----------RQLLFEAEAT 474

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQ 517
            +    G     +  K      P        + VKAI+     VE   + +  + +V D+
Sbjct: 475 AWLANNGVPLTDDSHKYAAGSVP-------EATVKAILTLDGFVESTENVEGPIGLVLDK 527

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T FYAE+GGQ+ D G          + D  K A G  +H      G +    ++   +DY
Sbjct: 528 TSFYAESGGQVCDVGVIKSGSASATVEDT-KVAAGFVLHSCDSVDGAVAVGDAVRCLVDY 586

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  NH+ TH L++AL  +LG  V Q GS +  + LRFD +HSK +T  E++ +E 
Sbjct: 587 DRRANIMPNHTMTHCLNYALRRVLGDSVDQKGSLVDDEKLRFDFSHSKAMTPDEIEKVEA 646

Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY-----------ED 685
            V D +   L V TR +    A   SG  A+ G  Y D VRVVSV             ED
Sbjct: 647 LVRDQVNAKLAVHTREVALAKAKEISGLRAVFGEVYPDPVRVVSVGPSIDDLLGAPASED 706

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              +S   CGGTH+++T +     ++SE  I  G+RRI
Sbjct: 707 WKGYSIEFCGGTHLANTSDAADFVLLSEEGIAKGVRRI 744


>gi|325120127|emb|CBZ55681.1| hypothetical protein NCLIV_061050 [Neospora caninum Liverpool]
          Length = 1034

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/967 (30%), Positives = 444/967 (45%), Gaps = 120/967 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R+ +++FF+ +GH + PSS +IP  D TL+F N+GM  FK IF GQ            V
Sbjct: 29  VRSAYVDFFEVHGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQVDRNSPLSKLRRV 88

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + + 
Sbjct: 89  TDTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKRDAIAWAWQLLTEVYKIP 148

Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY + +           D EA  LW +   L  ++++     +NFW MA+TGPCGPC
Sbjct: 149 KDRLYASYFGGDPRLPTCPPDNEARDLWLQY--LPPNRVLPFGAKENFWEMADTGPCGPC 206

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGMGLER
Sbjct: 207 SEIHYDRIGG-RDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGMGLER 265

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN---------IVNHRVIVDHLRSS 282
           +A+VLQ+K +NYD DLF  L     ++T G++               + +RV+ DH R  
Sbjct: 266 VASVLQDKQSNYDTDLFIALFDKIAELTPGLRPYEGKIGEEDKDLIDMAYRVLADHARCL 325

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+  + + +GS +PE+ 
Sbjct: 326 TAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMKEGAFPQLVSVVVSLLGSTFPEMK 385

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLD 399
           + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G PLD
Sbjct: 386 KNEEKVIRILHKEEQQFSRTLDNGVERFKKVANSLKAKGVKVFPGSEAFTLYSTYGFPLD 445

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT--QF 457
           + Q +    GL  +D   F +  +  R  +   S   G           +    A     
Sbjct: 446 LTQLMAEEVGL-QVDAEEFERKFDAHRVASENTSFKQGGAGAVYALPPDQHHLLAKNRNL 504

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV-----KAIVQQGEIVEEAVSGQKVE 512
              D     ++  +D   L  +  ++     + +      K        V    S   V 
Sbjct: 505 APTDDSAKYQWNVKDLAALVAQDAVEAAPVKAKVAAIWDGKRFAPDAAAVASPTSENFVA 564

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V+ D+T FYAE GGQ+GD G  +    G   ++ D QK  +   +H   V +G L+    
Sbjct: 565 VILDKTCFYAEQGGQVGDVGRLVDLSSGAEFEVIDSQKSGD-YVLHIGTVSKGTLKEGSE 623

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTI------------------LGSH-------- 604
           LV  +DY  R +L+ +H+ THLL+ AL  +                   G H        
Sbjct: 624 LVPLVDYVRRFKLAQHHTGTHLLNFALREVLVRKMRKNAEGGDKREDTNGLHIRESCLNE 683

Query: 605 --------VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
                   + Q GS +    LRFD    KP+ + ++ ++E+ V D IA+  PV  R +  
Sbjct: 684 RELSDEEDIQQKGSLVEEKRLRFDYAGEKPMENEDILAVENVVKDCIARERPVHYREIAL 743

Query: 657 EDAIAS-GAAALLGTKYNDRVRVVSVEYEDGG-------------VHSSALCGGTHVSST 702
           E A+   G  A+ G  Y D VRVVSV                     S  LCGGTH+ + 
Sbjct: 744 EQAMKIPGLRAVFGEVYPDPVRVVSVGSPIEDLVELAVSGKGETPFASIELCGGTHLHNA 803

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNV 756
            +I    I+SE S+  G+RR+ A+TG  A       +E  K+ AS       L   +  V
Sbjct: 804 AQIQDFCIISEESVAKGVRRVVAVTGDPALEARKELEELEKAFASLAAAPRELPALEKEV 863

Query: 757 VGR------------------VEEIWEEYR---KLQLIHAK--RKLQLNVEDLSCHKIAD 793
           +                    V+++ +  +   +LQ   +K   K    + +   ++   
Sbjct: 864 LKARGLLDSAGPLPLVGKRVLVKQLEQAQKSLLELQKARSKELLKEAKRLGEEVGNEHKT 923

Query: 794 VNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             F+   + ++  D K L +    L +       +LV  +     + +  V         
Sbjct: 924 KPFLVLNLPQLHGDGKALDTASQTLHQTAPELPFLLVTANPATGTAAIAFVPASCGKNAV 983

Query: 852 AVDLARL 858
           A      
Sbjct: 984 AAPWLNA 990


>gi|298708166|emb|CBJ30506.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus]
          Length = 992

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/926 (29%), Positives = 440/926 (47%), Gaps = 78/926 (8%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
            S +R +F+ FF +K+ H    SS ++P +DPTL+F N+GM  FK +F G   P      
Sbjct: 33  ASRVRDSFISFFTEKHDHTFWKSSPVVPHDDPTLLFANAGMNQFKPLFLGTADPALPLSK 92

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+ LT  
Sbjct: 93  LTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGSYFKEEAIGYAWECLTTV 152

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + LD  RLY T +  DE        +A K+W K   L   +++  +  DNFW M + GPC
Sbjct: 153 YKLDPSRLYATYFGGDEKLRVGADEDAKKIWLKY--LPESRVLPFSLADNFWEMGDVGPC 210

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC EI +D+           + +    IEIWN+VF+Q+ ++N      LP   IDTG+G
Sbjct: 211 GPCVEIHYDRIGG-RDAAKDVNMDKPEVIEIWNVVFIQYNRENDGSLKELPNKHIDTGLG 269

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+A++LQ K +NYD D+F  + +A    TG +               + +RV+ DH+R
Sbjct: 270 FERLASILQGKMSNYDTDVFVPIFEAIRSATGARPYTGKVGEEDSDNMDMAYRVVADHIR 329

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  I DG  P+N+GRGYVLRR++RRA+ Y + +LG        L+P +   M   +PE
Sbjct: 330 TLTIAITDGCTPSNDGRGYVLRRVLRRAIRYGQQVLGGKPGFFHTLVPVVVGLMKGIFPE 389

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L+ A+  +   ++ E+  F KTLD+GL   + V + LG  ++  G  AF+LY + G PLD
Sbjct: 390 LVDAEARVTAVIKDEEMSFNKTLDKGLKEFNKVAAALGDSKVFPGTAAFQLYSSMGFPLD 449

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           ++  +   +GL+ +D+  F+Q + ++++++        +   + +    ++    ++   
Sbjct: 450 LLTLMAEEKGLS-VDVEGFDQKMSDEKTKSNQARSNQKAAGGKPMILEAEQMDWLSK-RD 507

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            +    S      ++   +   + +  G        V     V +    Q V VV D T 
Sbjct: 508 TEATEASGRYTWHQQPAAKVLALFVGKGEGEDGVGFVPSASAVADEADQQTVGVVLDCTS 567

Query: 520 FYAEAGGQLGDTGCA-IGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G   + DG     +  V        +H   V+ G L     +V  +DY
Sbjct: 568 FYAEGGGQIYDIGELSLSDGSGSFAVRQVS-SFGAYTLHIGQVKAGTLSVGSDVVCKVDY 626

Query: 578 QNRRQLSINHSATHLLHHALSTILGSH---VSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           + R  ++ NH+ TH+L+ AL  +L        Q GS +  + LRFD + S  +T+ ++  
Sbjct: 627 ERRANVAPNHTMTHVLNFALRKVLDPSDGMCDQKGSFLDDEKLRFDFSWSGSLTAEQVAD 686

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------E 682
           +ED VND I +NLPV   +   E A        + G +Y D VRV+S+           E
Sbjct: 687 VEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSIGQDVPAMLEDPE 746

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----- 737
                  S   CGGTH+S+T E     I+ E+ I  G+RRI A+T   A + +       
Sbjct: 747 NSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVTRGLALAAVERAKAFE 806

Query: 738 -------------QDEKLKSLASFL-----KVSQGN-VVGRVEEIWEEYRKLQLIHAKRK 778
                         D  ++ L + L      V   N +  R+  + ++ + L+    + +
Sbjct: 807 QQLDVADGIEDISLDTTVRRLGAELDGAVISVKTKNKLRARLATLVQKAKALKKKVMEER 866

Query: 779 L--QLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQS-GIIMLVGISK 832
           +   + V      K  +      +       D+K    ++  + K       +ML    +
Sbjct: 867 VGQAVTVGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACPELTSMMLFTADE 926

Query: 833 EKKASVLIV-VTEDLLDRFNAVDLAR 857
           E    +    +      + +     +
Sbjct: 927 EADRYLCCGLIPNSKAAKKDTNKWVQ 952


>gi|224001280|ref|XP_002290312.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
 gi|220973734|gb|EED92064.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335]
          Length = 966

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/977 (30%), Positives = 459/977 (46%), Gaps = 111/977 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58
           +  +R+TF+ +F++NGH    SS  +P +DPTL+FTN+GM  +K +F G   P       
Sbjct: 16  MDKVRSTFISYFERNGHTFWRSSPCVPHDDPTLLFTNAGMNQYKPLFLGTCDPALKMASL 75

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +  T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ AI++AW  LT+EF
Sbjct: 76  KRATNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEAIEMAWKCLTEEF 135

Query: 119 DLDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            LD  RLY T +  DE      EA ++W +   L A++++     DNFW M  TGPCGPC
Sbjct: 136 KLDPNRLYATYFGGDESTPCDDEAREIWLQY--LPAERVLPFDAKDNFWEMGATGPCGPC 193

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D+           + +    IEIWN VF+QF ++       LP   +DTGMG ER
Sbjct: 194 TEIHYDRI-GNRDASKLVNADLPDVIEIWNNVFIQFNREADGSLRPLPAQHVDTGMGFER 252

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSS 283
           + ++LQ   +NYD D+F  L  A +++TG +               + +RV+ DH+R+ S
Sbjct: 253 LTSILQGVDSNYDTDIFIPLFDAIQKITGARPYAGKIEKEDPEFIDMAYRVVADHVRTLS 312

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           F IADG +P+N+GRGYVLRR++RRA+ Y R  L         L+  L   MG  +PEL +
Sbjct: 313 FAIADGAVPSNDGRGYVLRRVLRRAVRYGRQNLNAELGFFAQLVRTLVELMGDTFPELRE 372

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            +  +   +R E+E F KT+D+G+V  +     LG  ++  G+ A  LY + G P+D+ +
Sbjct: 373 KEEYVTAIIREEEESFSKTVDKGIVEFNKRCDALGDVKVFPGEDAHFLYTSMGFPVDLTE 432

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            +   RGL  +D+  ++  ++E++  + A  L   S  + K    + E+       G D 
Sbjct: 433 LMCEERGLT-LDMEGYDAKMKEEQELSNAAHLAKMSAGSGKDMRLVAEQTSHLVNKGVDA 491

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV------QQG-EIVEEAVSGQK-VEVV 514
                   +D K +  +      +   SI+KA+       + G   V+        V +V
Sbjct: 492 TN------DDAKYVWNE------DLEGSIIKALFIGRNETEDGIGFVDSISKENGAVGIV 539

Query: 515 FDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FY E+GGQ  DTG      G  ++IT+VQ       +H   V  G +    +   
Sbjct: 540 LDKTNFYGESGGQTFDTGSIKTSSGATIEITNVQIYGS-FVLHIGDVTEGTVTVNDAATC 598

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCITPDGLRFDVTHS 624
            +DY  R  ++ NH+ TH+L+ AL  +          G+ V Q GS +  + LRFD + S
Sbjct: 599 CVDYVRRAPIAANHTMTHILNFALRDVLVTRGDADQHGASVDQKGSLVDENKLRFDFSWS 658

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-- 681
            P+T  +L ++E    D I   +PV   +   E A   S   A+ G  Y D VRVV+V  
Sbjct: 659 GPLTPEQLVAVEKICVDQINSAVPVDNYVAPLEGAQQISSLRAVFGEVYPDPVRVVAVSP 718

Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                     +      +S   CGGTH+ +T E     ++SE  I  G+RRI  +T + A
Sbjct: 719 SPITSMLENPQDAQWNKYSVEFCGGTHLKNTSEAQGFVLLSEEGIAKGVRRITGVTMKDA 778

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK------------RKL 779
                   E    L +   +   ++   V+ +  E   L +  AK            +K+
Sbjct: 779 AIATAAASEFEAKLTAAGSLEGLDLEAHVKVLTVEMEGLSISAAKKIQFRDVMGTYGKKV 838

Query: 780 QLNVEDLSCHKIADV--------------NFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               +  +  + A V                +      VD K  K+V  A  KKI+   +
Sbjct: 839 AAWKKANAAEQTATVVEQVIEAANSTEGNKVVVRCDFGVDGKVAKAVSTAYGKKIKDKAL 898

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-------HMAQSG 878
           + V    +    +++       D    VD     A  +      G           AQS 
Sbjct: 899 LFVTADVDADRFMVVAFAPKGSD----VDCKAWVAAAVA-----GTDGKGGGKKDSAQST 949

Query: 879 GPNGNKADQAIAGVASF 895
            P     D  +     F
Sbjct: 950 VPGVGNIDGVLEKARGF 966


>gi|260187569|ref|ZP_05765043.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
          Length = 819

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/843 (34%), Positives = 436/843 (51%), Gaps = 69/843 (8%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146
           M  NFSFG YFK  AI+LAW LLT       + LD  R++ TVY +D+EA +LW++++GL
Sbjct: 1   MGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVF 205
            A++I R    DN+WSM   GPCGP SEI++D+G    P G P  SE+  RY+E+WNLVF
Sbjct: 61  PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVF 118

Query: 206 MQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           MQ E+     +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + ++    +V
Sbjct: 119 MQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTVARV 178

Query: 260 TGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
               Y+     + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG
Sbjct: 179 AARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLG 238

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
               ++  L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V S  
Sbjct: 239 IDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASST 298

Query: 377 GKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            K    +L+G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A + 
Sbjct: 299 KKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAA 357

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                  +   +      GAT+F G+D LR                         + +  
Sbjct: 358 ARKHAHADLSAYRELVDAGATEFTGFDELRS-----------------------QARILG 394

Query: 495 IVQQGEIVEE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQ 542
           I   G+ V          A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  
Sbjct: 395 IFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAA 454

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +TDVQK A+ ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG
Sbjct: 455 VTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLG 514

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            +  Q GS   P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A 
Sbjct: 515 PNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAM 574

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G  Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR
Sbjct: 575 GAIALFGESYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRR 630

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL- 781
           +EA  G  +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++   
Sbjct: 631 VEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASV 690

Query: 782 ----NVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                       +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  
Sbjct: 691 RAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQ 750

Query: 837 SVLIVVTEDLLD---RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           +V   V  +         A DL +  A  +  G GGG+  +AQ  G N    D A+  V 
Sbjct: 751 TVPYAVAANPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVR 809

Query: 894 SFL 896
           S +
Sbjct: 810 SEI 812


>gi|229820505|ref|YP_002882031.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566418|gb|ACQ80269.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 896

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/922 (34%), Positives = 492/922 (53%), Gaps = 61/922 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  +L++F +  H ++PS+SLI   DP+++FT +GMVPF     G E+  Y   
Sbjct: 1   MRTAEIRRRYLDYFAERDHTVVPSASLISA-DPSILFTIAGMVPFIPYIVGTEQAPYSRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND++ VGRT RH TFF+M GNFSFG YFKE A++ AW+L+T      
Sbjct: 60  VSVQKCIRT----NDIEEVGRTTRHGTFFQMNGNFSFGDYFKEGAVEFAWELMTSSQDDG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD   L++TV++ED E  ++ +++    A++++ ++  D+FW   + GP GP +E  
Sbjct: 116 GFGLDPDLLWVTVWEEDAETARVLREVIDFPAERVVPLSRADSFWDTGQPGPAGPTAEWH 175

Query: 177 FDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMGL 230
            D+G +  P G P     G+RY+E WNLVF +F +             LP  SIDTGMGL
Sbjct: 176 LDRGADRGPDGGPAVDTAGDRYVEFWNLVFDEFLRGPGPGKDYPLLGELPMKSIDTGMGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIAD 288
           ER+A +LQ K N Y+ID    +I  +E+++G +Y     + V  RV+ DH+RS+  L++D
Sbjct: 236 ERVAAILQGKDNIYEIDEVFGVIARAEELSGRRYGASREDDVRMRVVADHVRSAMMLVSD 295

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+NEGRGYVLRR++RR++   RLLG T+P +  LLP     M ++YPEL      I 
Sbjct: 296 GVKPSNEGRGYVLRRLLRRSVRAMRLLGVTDPALPELLPVSKDVMKASYPELEADFGRIS 355

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
             +  E++ F +TL  G  +LD  +  L +     L G+ AF L+DT+G P+D+  ++  
Sbjct: 356 TIVYDEEDAFRRTLTSGTTILDTAVRRLKESGGSQLGGEQAFALHDTYGFPIDLTLEMAA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGA-TQFIGYDLLR 464
            +G++ +D  +F + + EQR+RARA +L   SG  +  ++  +     A   F+GY    
Sbjct: 416 EQGVS-VDEEAFRRLMGEQRARARADALAKRSGHADTSVYRDIAGSLPAPVSFLGYTDAE 474

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                      V  ++  G     A +  +VEVV D+TPFYAEA
Sbjct: 475 ARVA-----------------------VVGLLVDGVPAPAAQAPAEVEVVLDRTPFYAEA 511

Query: 525 GGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQL D G  +  DG  +++ DVQ   +G+ VH   +  G+L    S V +ID   RR +
Sbjct: 512 GGQLADQGQIVLDDGAVVEVDDVQAPIKGLSVHRGRLVEGVLGLGSSGVASIDTARRRAI 571

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ATH++H A+   +G   +Q GS   P   RFD      + SA L  I   VN ++
Sbjct: 572 ARAHTATHMVHKAIREHVGESATQAGSENAPSRFRFDFRSGSALPSAALAEINARVNTLL 631

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A +L V   +M  +DA A+GA AL G KY DRVRVVS+    GG  S  LC GTHV+STG
Sbjct: 632 ADDLDVTDEVMALDDARAAGAMALFGEKYGDRVRVVSI----GGDWSKELCAGTHVASTG 687

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            + L+ ++ ESSI +G+RR++A+ G  A  +   +   +  L   +      +  RV  +
Sbjct: 688 HLGLVTLLGESSIGSGVRRVDALVGDGAFGYQAKEHALVGQLTQLVGARGEELPERVSSL 747

Query: 764 WEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQ 817
               ++ +      +             S   ++    ++H   EV    ++++++  L+
Sbjct: 748 MTRLKEAEREIQSLRQGRLLAAAASLAASAALVSGARVVTHDAGEVASVDDVRALVVDLR 807

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHM 874
            ++      +V +    K   ++V   +   R     A +L R++A  LGGGGG GR  +
Sbjct: 808 DRLGEAQAAVVVVGGVAKGRAVVVAATNPAARESGVRAGELVRVAAGALGGGGG-GRDDL 866

Query: 875 AQSGGPNGNKADQAIAGVASFL 896
           AQ GG + ++   A+  V + +
Sbjct: 867 AQGGGSDPDQIPAALEQVVAAV 888


>gi|27904852|ref|NP_777978.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427399|sp|P59420|SYA_BUCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|27904250|gb|AAO27083.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 880

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/915 (33%), Positives = 484/915 (52%), Gaps = 63/915 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-VYQAV 61
             + I   FL FF K GH +LP S+LIP NDP+L+FTNSGM  FK+IF  +     Y  V
Sbjct: 4   TSNEICQMFLNFFYKKGHTILPGSTLIPNNDPSLLFTNSGMNQFKDIFIQKNYNFKYNRV 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT+Q C+R GGKHND +NVG T +HHTFF+MLGNFSF  YFK  AI  AW  LT  ++ +
Sbjct: 64  TTLQNCLRTGGKHNDFENVGYTPQHHTFFQMLGNFSFRDYFKLDAILYAWKFLTSKEQLN 123

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173
           L + +L+ITVY +D E++ +WK I  +   KII+I         DNFW M E GPCGPC+
Sbjct: 124 LSKEKLWITVYQDDLESYNIWKNIIKIDKHKIIKIGNKYNSSDSDNFWQMGEIGPCGPCT 183

Query: 174 EIFFDQGECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G  +PG +PG++     R++EIWN+VF+QF + +  +   L +  +DTGMGLER
Sbjct: 184 EIFYDYGNTLPGTIPGNNGCNVPRFVEIWNIVFIQFNKLSNGKLIKLTESYVDTGMGLER 243

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           ++ V+   T+NY+IDLFK LI+   +++ +    N   +  VI DH+R+ SF+I++ I+P
Sbjct: 244 ISAVINNVTSNYEIDLFKPLIKHILELSTVNTPKNK--SIYVIADHIRACSFIISENIIP 301

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE  GYVLRRI+RRA+ +   LG     +  L+P L   MG   P L + +  IE  L+
Sbjct: 302 SNEKHGYVLRRIIRRAIRHGHNLGIKSLFLHKLIPTLINTMGKFNPVLKKQQNKIENVLK 361

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+++F +TL++GL LL   L  +    +L+G +AF LYDT G P+D+  DI     ++ 
Sbjct: 362 LEEQKFIETLEKGLKLLHKELKQIQPKHVLSGKLAFNLYDTFGFPIDLTIDICKEHNIS- 420

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           I+I+ F + L + +  +   +      T    +         T F+GY   +    +   
Sbjct: 421 INIMEFKRYLNQHKQNSINKNF---LNTRNAYYIEDNNINIKTHFVGYQFNKTQSIINNI 477

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                +K                        +    Q   +  ++TPFY E+GGQ+GD+G
Sbjct: 478 IIKNNKKTL----------------------QINDYQNSILFLNETPFYGESGGQIGDSG 515

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
                  +  I +  K    I  H   +  G L    ++   I+   R+ + INH+ATHL
Sbjct: 516 IIHNKTGKF-IVNCTKMFGNIIGHVGTLASGYLNIHDTVCAEINLPKRKSIQINHTATHL 574

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH +L  ILG HV Q GS I+   L+FD +H+ P+   E++ +E+ +N  I +N+ V T 
Sbjct: 575 LHASLRKILGKHVFQKGSFISDQSLKFDFSHNAPMNLREIQEVENIINKKIQKNISVSTT 634

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +   ++       AL   KY D+VR++S+        S  LCGGTH   TG+I L  I S
Sbjct: 635 LTTLQEIQNKKVMALFQDKYKDKVRMISI-----NDFSVELCGGTHTKYTGDIGLFKITS 689

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E SI +GIRRIEA+TG+ A S +  Q++ + ++A+ L     N+   + ++      L+ 
Sbjct: 690 EISISSGIRRIEAVTGKHAISIIHHQEKTINNIANMLNSKTNNIEQTITKLLNNNIHLKK 749

Query: 773 IHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                  Q     +N        I DVN +   +   +   L++++D L+ + +  +I++
Sbjct: 750 QIYTLYNQNIYNIVNSLSKHNILIKDVNIIIKNLKNENLLSLRNIVDKLKNRFKCSVIII 809

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLS------AKVLGGGGGGGRPHMAQSGGPN 881
             I    K+ +++ VT ++ DR +A+D+                       ++A+ G  N
Sbjct: 810 SSIIN-NKSIIIVGVTRNVTDRISALDILNKLTKKLGGRGGGKN-------NIAEGGIKN 861

Query: 882 GNKADQAIAGVASFL 896
                  +  + +++
Sbjct: 862 LISLPIELKKIKTWI 876


>gi|49119610|gb|AAH73734.1| LOC443692 protein [Xenopus laevis]
          Length = 1005

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/965 (29%), Positives = 461/965 (47%), Gaps = 83/965 (8%)

Query: 3    NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57
            + ++IR  FL +F +K+GH  +PSSS+ P  DP+L+F N+GM  FK IF G   P     
Sbjct: 53   SAAAIRRAFLRYFQEKHGHRHVPSSSVRPRGDPSLLFVNAGMNQFKPIFLGTADPRSDMA 112

Query: 58   -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             Y+ V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW LLT+
Sbjct: 113  QYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACSMAWQLLTQ 172

Query: 117  EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
             + + + RLY+T +          D+E  ++W  + G+   +++     +NFW M ETGP
Sbjct: 173  GYGIPEDRLYVTYFGGEPTLGLSADQETQEIWLSL-GVPPARLLPFGLKENFWEMGETGP 231

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CGPC+EI +D            +++    +EIWNLVFMQ+ +++ +   +LP+  +DTGM
Sbjct: 232  CGPCTEIHYDHVGG-RNAASLVNQDSPDVVEIWNLVFMQYNRESDRSLRLLPQQHVDTGM 290

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHL 279
            GLER+ TVLQ K +NYD DLF  +++A  +         + G +   +  + +RV+ DH+
Sbjct: 291  GLERLVTVLQGKRSNYDTDLFSPILEAIMKGSRAPQYQGLMGKEDTEHTDMAYRVVADHI 350

Query: 280  RSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R+    IADG+ P   G   VLRRI+RRA+ + + +L      +  L+P++   +G A+P
Sbjct: 351  RTLCVCIADGVYPGMSGAELVLRRILRRAVRFSSEILRAPPLFLSSLVPSVVHVLGEAFP 410

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            EL + K  I   L   +E F  +L +G  ++D  L    + +     VA+ L+   G PL
Sbjct: 411  ELEREKSQIMNILNENEEAFLISLQQGRRIIDRTLQQQEEPQTFPVGVAWSLHRNLGFPL 470

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            D++  +L  RG++ +D  + +    E+  R   +     + T  ++     + +   +  
Sbjct: 471  DLIGLMLEERGIS-LDKAAMDHLTVEEAERKMRNQQADEAQTGLEL-----DVHSMAELQ 524

Query: 459  GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
               +   +   K +  +      +       + V  + +   +  E   GQ+  V+ DQT
Sbjct: 525  RRGVPCTNDSPKYNYTLAADGKYV--FGPCRATVLMLYKDHSLHSEIDKGQRCGVILDQT 582

Query: 519  PFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
             FYAE GGQ  D G  +    +     +  VQ    G ++ H +    +LR    LVL +
Sbjct: 583  CFYAEQGGQSCDQGYFVRKDQQEALFPVESVQ--VAGGYMLHEVTTPEVLRVGDQLVLYL 640

Query: 576  DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            D  +R      H+ATHLL++ L  +LG +  Q GS +T + LRFDV+ + P+   +L+ +
Sbjct: 641  DEAHRLACMQKHTATHLLNYTLHQVLGENTVQRGSHVTAERLRFDVSVTAPVHVEQLQEV 700

Query: 636  EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY----------ED 685
            E  + D+I+Q+  + T ++    A        +   Y + VRVVSV            + 
Sbjct: 701  EQVLQDLISQDEEIHTALVPLTAAKCVRGLRTVDEAYPNPVRVVSVGIPVDVALKPGSQA 760

Query: 686  GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK-- 743
                S  LC GTH+ +TG I  + IVSE  +  GI R+ AITG+ A+       E ++  
Sbjct: 761  ALQTSVELCCGTHLLTTGAIQDVVIVSERPLAKGITRLIAITGEEAKQARETGHELVRAV 820

Query: 744  -SLASFLKVSQGNVVGRV-----------------------EEIWEEYRKLQ------LI 773
             S+   +K    ++                           +E+  + + LQ      + 
Sbjct: 821  ESITERMKTKPLSLNEGFHLSKEVGILTDSVDSATMPQWQRKELQAKLKALQRNANTNIR 880

Query: 774  HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
              + K    +      K +  + +   +S      L  V++ +        +ML      
Sbjct: 881  KLEVKQAAVIAQGLLKKHSRCSLIIDKVSVESLSMLVKVVNQVCDGSPGASVMLFSKQDS 940

Query: 834  KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            +K      V +      +A + A      + GG  GG   +A+  G   +  D+ +    
Sbjct: 941  EKVFCACQVPKGSGSELSAAEWATTVCSEM-GGNAGGSDVVAKGTGT-IDSLDRVLQTAQ 998

Query: 894  SFLKK 898
            +F +K
Sbjct: 999  NFAQK 1003


>gi|72389797|ref|XP_845193.1| alanyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62360052|gb|AAX80474.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801728|gb|AAZ11634.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261328581|emb|CBH11559.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 966

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/971 (29%), Positives = 463/971 (47%), Gaps = 107/971 (11%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
           V+ +R  F+ FF++ GH  +PSS+++P NDPTL+FTN+GM  FKN+F G   P       
Sbjct: 10  VNRVRQEFVSFFEQRGHTFVPSSAVVPHNDPTLLFTNAGMNQFKNLFLGTADPNTDFGRL 69

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI  +W+LLT+ +
Sbjct: 70  TRAVNSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKREAILWSWELLTEVY 129

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY T ++         DEE+ +LW ++  L A ++I     DNFW M + GPCG
Sbjct: 130 KLPKDRLYATYFEGDPANGIEADEESKQLWLQL--LPASRVIAGNAKDNFWEMGDVGPCG 187

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSEI FD+           +++    +E+WNLVFMQFE++       LPKM +DTGMGL
Sbjct: 188 PCSEIHFDRIGG-RDAADLVNKDDPMVLEVWNLVFMQFERRAGGVIVPLPKMHVDTGMGL 246

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--------NNIVNHRVIVDHLRSS 282
           ER+ ++LQ   +NYD D +  L    ++VTG +           +  V +R + DH+R  
Sbjct: 247 ERLTSILQGADSNYDTDAWTPLFDTIQKVTGFEKSYAEVRHDTCDATVAYRAVADHIRCL 306

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ ++ + +G  +  + 
Sbjct: 307 TVALADGAMPDSVGRGFVLRRIIRRAVRYGVQFLGAKVGFFHQLVDSVVSSLGPFFKHIQ 366

Query: 342 QAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + +    I+  L  E+  F +T + GL   +  ++    + +++G+ AF L+D +G P+D
Sbjct: 367 EPRTVQRIKGVLADEETSFARTWETGLKHFNKAVAEAV-NNVISGENAFILHDRYGFPVD 425

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   +     ++ +D+  F+  +       +A  L  G     K +  +   +   +   
Sbjct: 426 LTSLLAEKANMS-VDLEGFHATM-------KASQLSSGRVAAAKTFIDV---HQLEELKA 474

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K    +          S V  ++   E+       + + ++ D T 
Sbjct: 475 GGVSPTDDSAKYTWKKHVAEVKAIFDKKSGSFVDVLLPDSEM-----GPEDIGIILDVTN 529

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERG---ILRTEMSLVL 573
           FYAEAGGQ+ DTGC +     +          G  VH      VE G    +    S+ L
Sbjct: 530 FYAEAGGQIYDTGCIVAAPDAIFDVRKVYNVGGYIVHVGGMRSVEDGAAAPIPVTASVEL 589

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPDGLRFDVTHSKP 626
            +DY+ R  ++ NH++TH+L+  L  +L          V+Q GS +TP+ LRFD +++  
Sbjct: 590 QVDYERRLPIAANHTSTHILNWCLRRVLEEEAKDNFMEVNQKGSLVTPEMLRFDFSYNNK 649

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---- 681
           ++  +L  +E  +N II Q L V  + +  + A   +G   + G KY D V V+SV    
Sbjct: 650 VSLEDLIKVEKLINQIIQQGLEVYRKEIALDAASRIAGLRHMFGEKYPDPVSVISVGVPV 709

Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                  E E+   +S+  CGGTH+S+T +  L  I+SE S+  GIRR+   T   AR  
Sbjct: 710 EKLIAEPESEEWRAYSTEFCGGTHLSNTQDAQLAVILSEESLMKGIRRMVVATRDAARKA 769

Query: 735 LMGQDEKLKS------------LASFLKV-----------------SQGNVVGRVEEIWE 765
             G     +             +A  L V                  +  + G ++ +  
Sbjct: 770 QEGGKALQQEYREIMSRPASDAVAKSLSVLNKKVGDSAIPLVVKNTLREEIDGSIKNVLG 829

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSG 823
             +       ++  +        +  +    +   +++   D + L++  D   K +   
Sbjct: 830 ALKAQAAQMKEKATEAGRAAAEAYDASAGPLLVRHLTDTGADREALQAYADGFSKAVSGD 889

Query: 824 IIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
           + + +  S E KA  L+ +    +  + +AV  A+ +      G GGG+P  AQSG P  
Sbjct: 890 VGLFLVGSDESKALALVSLPPAFVAKKLDAVSWAKTAV-----GKGGGKPSAAQSGFP-A 943

Query: 883 NKADQAIAGVA 893
               Q +    
Sbjct: 944 ANTTQVLQKAE 954


>gi|313221903|emb|CBY38956.1| unnamed protein product [Oikopleura dioica]
          Length = 934

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/963 (30%), Positives = 451/963 (46%), Gaps = 109/963 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV- 61
             + +R  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK+IF G   P      
Sbjct: 6   TANEVRQQFLDFFKEREHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAK 65

Query: 62  ----TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ ++DLL K 
Sbjct: 66  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFDLLNKV 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY T ++         D EA + W K   L AD+I+     DNFW M +TGPC
Sbjct: 126 WGIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           + +    +EIWNLVFMQ+++Q  +    LP  S+DTGMG
Sbjct: 184 GPCSELHYDRIGG-RNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTGMG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
           LER+ +VLQ+K  NYD D+F    +  E +TG +          +    + +RV+ DH R
Sbjct: 243 LERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADHAR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  +ADG  P N GRGYVLRRI+RRA+ Y    L       + L+  +   +G A+PE
Sbjct: 303 TLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLKMKVDDFVALVDVVVESLGDAFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +     +E L+ E  +F KTLDRG  +L+  +  L   + L GDVA+ LYDT+G PLD
Sbjct: 363 LKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFPLD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I     L  +    F +  ++   R++      G+        S K+ Y A     
Sbjct: 423 LTTLIAEEHNLT-LSCEEFEEERQKAIERSK------GADGVATTDDSHKQNYEANSAGE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y                         N + + V A+    E  +E  S + V +V D+T 
Sbjct: 476 Y-----------------------TFNSIKAKVVALRFNKEFHQECESCE-VGIVLDKTN 511

Query: 520 FYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G       D     + +VQ +A G  +H   +  G L     + L ID
Sbjct: 512 FYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRA-GYVLHVGTLV-GKLSVGDEINLNID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            + R  +  NH+ TH+L+  L  +LG     Q GS + P+ LRFD T    +  A++K +
Sbjct: 570 TERRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQIKQV 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV------ 688
           E+  N++I +   V  ++     + A  G  A+    Y D VRVVS+      +      
Sbjct: 630 EEICNEVITRGGAVHCQVSPLAQSKAIQGLRAMFDETYPDPVRVVSIGVPVNELLENPTS 689

Query: 689 -----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                 S   CGGTH+        L I +E +I  GIRR+ A+TG  A           K
Sbjct: 690 GAADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRMIAVTGAEAEKADRQAQRLEK 749

Query: 744 SLASFLKVSQGNVVG--------------------------RVEEIWEEYRKLQLIHAKR 777
            + + LK      +                           +  E+ +  +K ++   + 
Sbjct: 750 DV-NELKAEVKEAIKAKNTAEANQRAISLGKTIEVAPISAWKRAELVDAVKKSKMEIVQY 808

Query: 778 KLQLNVEDLSCHKIADVNFMS-----HIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           + ++   ++   K  D   ++      + +  ++K L  ++    KK     ++L     
Sbjct: 809 EQKVEEYEIQTEKRIDAGDVAEPEVLLLDAGSNNKVLNEILKLYAKKSPKSHVLLFSADH 868

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K  + +  T        A +     + ++  G GGG+   AQ+ G N ++   A+A  
Sbjct: 869 TAKKVLCLAQTPK-GSTLKANEWVSSISPLI-DGRGGGKDVQAQASGKNVSELKGALAKA 926

Query: 893 ASF 895
             F
Sbjct: 927 KEF 929


>gi|325068847|ref|ZP_08127520.1| alanyl-tRNA synthetase [Actinomyces oris K20]
          Length = 782

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/802 (35%), Positives = 434/802 (54%), Gaps = 64/802 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANEHEIRPSVSLVSP-EPSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPAYGPDGGPAVDIQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHL 279
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y             ++ V  RV+ DH+
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKVYGRGSAGPEAGEAYHDDVRMRVVADHV 295

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL      M S+YPE
Sbjct: 296 RSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPE 355

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDT 393
           L      I E    E++ F +TL  G  +LD  ++   K+       +++G  AF+L+DT
Sbjct: 356 LETGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGSSGRPLVSGKSAFELHDT 415

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-- 451
           +G P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  +   F   EK  
Sbjct: 416 YGFPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEM 474

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511
            G + F+GY                         +   + V  I+  G       +  +V
Sbjct: 475 GGGSTFLGY-----------------------TESSADATVTGILVDGVPQSVVTAPAEV 511

Query: 512 EVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           EVV D+TPF+AE GGQL D G   + DG  +++ DVQ   +G+ VH   +  G +     
Sbjct: 512 EVVLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEK 571

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
               ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +RFD  H   + S 
Sbjct: 572 AFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASD 631

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++  IE+ VN  ++++L V   IM+ + A A+GA AL G KY   VRVVS+    GG  S
Sbjct: 632 QISGIEERVNARLSEDLAVTDEIMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWS 687

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A  +   +   +  L++ + 
Sbjct: 688 KELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQAKEHALVSQLSTMVG 747

Query: 751 VSQGNVVGRVEEIWEEYRKLQL 772
               ++  RVE +    +  + 
Sbjct: 748 GRPEDLPERVESLMARLKDAEK 769


>gi|313229137|emb|CBY23722.1| unnamed protein product [Oikopleura dioica]
          Length = 941

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/971 (30%), Positives = 451/971 (46%), Gaps = 118/971 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV- 61
             + +R  FL+FF++  H  + SSS IP +DPTL+F N+GM  FK+IF G   P      
Sbjct: 6   TANEVRQQFLDFFKELEHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAK 65

Query: 62  ----TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ +++LL K 
Sbjct: 66  LKSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFELLNKV 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + +   RLY T ++         D EA + W K   L AD+I+     DNFW M +TGPC
Sbjct: 126 WGIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPC 183

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE+ +D+           + +    +EIWNLVFMQ+++Q  +    LP  S+DTGMG
Sbjct: 184 GPCSELHYDRIGG-RNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTGMG 242

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------YEGNNIVNHRVIVDHLR 280
           LER+ +VLQ+K  NYD D+F    +  E +TG +          +    + +RV+ DH R
Sbjct: 243 LERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADHAR 302

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  +ADG  P N GRGYVLRRI+RRA+ Y    L       + L+  +   +G A+PE
Sbjct: 303 TLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLNMKVDDFVALVDVVVESLGDAFPE 362

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +     +E L+ E  +F KTLDRG  +L+  +  L   + L GDVA+ LYDT+G PLD
Sbjct: 363 LKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFPLD 422

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I     L  +    F +  ++   R++      G+        S K+ Y A     
Sbjct: 423 LTTLIAEEHNLT-LSCEEFEEERQKAIERSK------GADGVATTDDSHKQNYEANSAGE 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y                         N + + V A+    E  +E  S + V +V D+T 
Sbjct: 476 Y-----------------------TFNSIKAKVVALRFNKEFHQECESCE-VGIVLDKTN 511

Query: 520 FYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ+ D G       D     + +VQ +A G  +H   +  G L     + L ID
Sbjct: 512 FYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRA-GYVLHVGTLV-GKLSVGDEINLNID 569

Query: 577 YQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
            + R  +  NH+ TH+L+  L  +LG     Q GS + P+ LRFD T    +  A++K +
Sbjct: 570 TERRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQIKQV 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV------ 688
           E+  N++I +   V  ++     + A  G  A+    Y D VRVVS+      +      
Sbjct: 630 EEICNEVITRGGAVHCQVSPLAQSKAIQGLRAMFDETYPDPVRVVSIGVPVNELLENPTS 689

Query: 689 -----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                 S   CGGTH+        L I +E +I  GIRR+ A+TG  A           K
Sbjct: 690 GAADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEKADRQAQRLAK 749

Query: 744 SLASFLKVS-----QGNVVGRVE-----------------------------EIWEEYRK 769
             A+ LK       +  V   ++                             E+ +  +K
Sbjct: 750 --ANQLKEKDVNELKAEVKEAIKAKNTAEANQRAISLGKTIEVAPISAWKRAELVDAVKK 807

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMS-----HIISEVDSKELKSVMDALQKKIQSGI 824
            ++   + + ++    +   K  D   ++      + +  ++K L  ++    KK     
Sbjct: 808 SKMEIVQYEQKVEEYGIQTEKRIDAGDVAEPEVLLLDAGSNNKVLNEILKLYAKKSPKSH 867

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L       K  + +  T        A +     + ++  G GGG+   AQ+ G N + 
Sbjct: 868 VLLFSADHTAKKVLCLAQTPK-GSTLKANEWVSSISPLI-DGRGGGKDVQAQASGKNVSG 925

Query: 885 ADQAIAGVASF 895
              A+A    F
Sbjct: 926 LKGALAKAKEF 936


>gi|225620397|ref|YP_002721654.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225215216|gb|ACN83950.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 867

 Score =  692 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/885 (33%), Positives = 475/885 (53%), Gaps = 49/885 (5%)

Query: 20  HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
           H +  SSSLIP +DP+L+FT +GM+ FK  + G +K  Y  V T+QKC R     +DL+N
Sbjct: 19  HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74

Query: 80  VGRTNRHHTFFEMLGNFS-FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138
           +G+T RHHTFFEM GNF   G YFK+ AI+ AW+  T+   L   R+Y+++Y++D++AFK
Sbjct: 75  IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134

Query: 139 LWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195
           +W +  G+  +KI+R+   DNFW    ++G CGPCSE++ D GE    G P      + E
Sbjct: 135 IWNEHIGVPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           RY+E WNLVF +F Q  +     LP + IDTGMGLER+  + Q   +NY  D+ K ++ A
Sbjct: 195 RYLEFWNLVFNEFFQDTEGNLSPLPNVGIDTGMGLERLCYITQGVESNYQTDVMKPIVDA 254

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
             +   +KY+  N     +I DHLR+  F+I++G  P+NEGRGYVLRR++RRA+  A  L
Sbjct: 255 IAKKLNVKYDDKNKTKINLIADHLRALVFVISEGCTPSNEGRGYVLRRLLRRALKTASDL 314

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+    +  +  ++       Y  L + +  ++  L+ E+ +F  T+  G+  L  V+  
Sbjct: 315 GHKGSFLNEITSSVVNVYKEIYDYLPKEEENVKRILKDEENKFINTISAGMNKLYAVMEE 374

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
               ++++G  AF L+DT+GLP+DI ++     G   +D   F +A+EEQ+ R+R     
Sbjct: 375 NKDSKVISGKDAFMLFDTYGLPIDITEEEASDHGFT-VDKAGFEEAMEEQKKRSRGA--- 430

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                                  G D      +++        +   +L NGV++ + A+
Sbjct: 431 -----------------------GEDKRSKFGYVENYETKYVGEETDNLINGVNAKIIAV 467

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIF 554
            +     ++  S   V ++ D +PFY E GGQ+GD G         ++I D QKK   I 
Sbjct: 468 YEDNAKKDKTSSSNAV-IITDVSPFYGEMGGQIGDNGYIENSKKEIIKIIDTQKKENTII 526

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            H A      L     + L +++  R  +  NH+ATH+L   L   LG+HV+Q GS ++ 
Sbjct: 527 -HIADCSSHSLSVGEEIKLFVNFDRRSAIRKNHTATHILQKVLELTLGNHVNQAGSFVSD 585

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           + LRFD TH   I+   L SIE+ VN+++ +++P V + M +E+AIA GA AL G KY D
Sbjct: 586 EYLRFDFTHPDSISEDTLISIENQVNEVVFKSMPAVIKYMPKEEAIACGAKALFGEKYPD 645

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VR++ +    G   S  LCGG+H+++T E+   +IVSE S+ +G+RRIEAITG +A + 
Sbjct: 646 TVRILDI----GNGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLKAANE 701

Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
                 K+K+LA  L  S+   +  R E +  E +KLQ    + K              D
Sbjct: 702 ASKLFSKVKNLAHILNASKTDELTVRAESLQNEVKKLQKEIKQLKTSGASAVSFMDNFED 761

Query: 794 VNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DR 849
           +  +     E   D KE++   D ++++++  I +++    +   S+L+ +T + L   +
Sbjct: 762 LKGIKFYNLEFNDDIKEVRLYADTIKERVKDSIAVMIS-KTDSSNSILVQITGNALKEKK 820

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +A ++ +      GG GG G+   AQ    N  KA + I  + S
Sbjct: 821 LSANNIIKDIIAAAGGRGG-GKDTFAQGSIENIEKAKEEINKLKS 864


>gi|322829672|gb|EFZ32980.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/983 (30%), Positives = 467/983 (47%), Gaps = 124/983 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P       
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           ++E    IEIWNLVFMQFE+        LPKM +DTGMGL
Sbjct: 184 PCSEVHFDRLGG-RNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+ +++Q   +NYD D +  L +A + VTG +          + +  V +RVI DH+R 
Sbjct: 243 ERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            S  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ A+   +G  +  +
Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362

Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
              +    I+  L  E+  F KT D GL   +  ++    D  ++GD AF L+D +G P+
Sbjct: 363 QDPRTVQRIKTVLADEEASFSKTWDVGLKHFNKAVADAV-DNTISGDNAFILHDRYGFPV 421

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +    GL  +D+  F+  +       +A+ L  G     K +  + +        
Sbjct: 422 DLTCLLAEKAGLR-VDMNGFHATM-------KANQLSAGRVAAAKTFLDVHQ-------- 465

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512
                   + +K+      +     +    ++ VKAI   + G  V+  + G++ E    
Sbjct: 466 -------LEELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIV-----ERGILR 566
           ++ D T FYAE+GGQ+ DTG  +       ++  V     G  VH   +         + 
Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVKKV-YNLGGYVVHLGRMMTTNSTAVPIP 577

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPDGLRF 619
              S+ L +DY+ R  ++ NHS TH+L+  L  +L          V Q GS +T + LRF
Sbjct: 578 VTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPESYMEVQQKGSLVTEEMLRF 637

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRV 678
           D +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D V V
Sbjct: 638 DFSYNSRVSQEDLAKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSV 697

Query: 679 VSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA-- 725
           +SV           E  +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI    
Sbjct: 698 ISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRIVVAT 757

Query: 726 --------ITGQRARSHLMG------QDEKLKSLASFLK-------------VSQGNVVG 758
                     G+               D   KSL+   K               +  + G
Sbjct: 758 RDAARKARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDG 817

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDAL 816
            V       + +     ++       +   +   +  F    +S+  ++   L++  D  
Sbjct: 818 SVRAALANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGF 877

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
              +Q  + + +  +   KA  L+ + +     + +AVD A+ +      G GGG+PH A
Sbjct: 878 TNAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAA 932

Query: 876 QSGGPNGN---KADQAIAGVASF 895
           QSG    +     ++A+A  A  
Sbjct: 933 QSGLTAADVDVAMEKALAEAAKM 955


>gi|71655886|ref|XP_816499.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881631|gb|EAN94648.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/983 (30%), Positives = 470/983 (47%), Gaps = 124/983 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P       
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           ++E    IEIWNLVFMQFE+        LPKM +DTGMGL
Sbjct: 184 PCSEVHFDRLGG-RNAAELVNKEDPMVIEIWNLVFMQFERHEDGVLVPLPKMHVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+ +++Q+  +NYD D +  L +A + VTG +          + +  V +RVI DH+R 
Sbjct: 243 ERLTSIMQDVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            S  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ A+   +G  +  +
Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362

Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
              +    I+  L  E+  F KT D GL  L+  ++    D  ++GD AF L+D +G P+
Sbjct: 363 QDPRTVQRIKTVLADEEASFAKTWDVGLKHLNKAVADAV-DNTISGDNAFILHDRYGFPV 421

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +    GL  +D+  F+ A+       +A+ L  G     K +  + +        
Sbjct: 422 DLTCLLAEKAGLR-VDMNGFHAAM-------KANQLSAGRVAAAKTFLDVHQ-------- 465

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512
                   + +K+      +     +    ++ VKAI   + G  V+  + G++ E    
Sbjct: 466 -------LEELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIV-----ERGILR 566
           ++ D T FYAE+GGQ+ DTG  +       ++  V     G  VH   +         + 
Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVKKV-YNLGGYVVHLGRMMTTNSTAVPIP 577

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPDGLRF 619
              S+ L +DY+ R  ++ NHS TH+L+  L  +L          V Q GS +T + LRF
Sbjct: 578 VTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEEMLRF 637

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRV 678
           D +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D V V
Sbjct: 638 DFSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSV 697

Query: 679 VSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA-- 725
           +SV           E  +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI    
Sbjct: 698 ISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRIVVAT 757

Query: 726 --------ITGQRARSHLMG------QDEKLKSLASFLK-------------VSQGNVVG 758
                     G+               D   KSL+   K               +  + G
Sbjct: 758 RDAAREARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDG 817

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDAL 816
            V       + +     ++       +   +   +  F    +S+  ++   L++  D  
Sbjct: 818 SVRAAIANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGF 877

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875
              +Q  + + +  +   KA  L+ + +     + +AVD A+ +      G GGG+PH A
Sbjct: 878 TNAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAA 932

Query: 876 QSGGPNGN---KADQAIAGVASF 895
           QSG    +     ++A+A  A  
Sbjct: 933 QSGLTAADVDVAMEKALAEAAKM 955


>gi|71416315|ref|XP_810193.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70874690|gb|EAN88342.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 959

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/982 (30%), Positives = 466/982 (47%), Gaps = 122/982 (12%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           V+ +R  FL+FF++ GH+ +PSS ++P NDPTL+F N+GM  FKN+F G   P       
Sbjct: 6   VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 Q C+RAGGKHNDLD+VGR   HHTFFEMLG++SFG YFK  AI+ AW+LLT+ +
Sbjct: 66  TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125

Query: 119 DLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L + RLY+T ++         DEEA +LW ++  +  + +I     DNFW M + GPCG
Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PCSE+ FD+           ++E    IEIWNLVFMQFE+        LPKM +DTGMGL
Sbjct: 184 PCSEVHFDRLGG-RNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTGMGL 242

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLRS 281
           ER+ +++Q   +NYD D +  L +A + VTG +          + +  V +RVI DH+R 
Sbjct: 243 ERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADHIRC 302

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340
            S  +ADG +P + GRG+VLRRI+RRA+ Y  + LG        L+ A+   +G  +  +
Sbjct: 303 LSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFFTHM 362

Query: 341 IQAK--LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
              +    I+  L  E+  F KT D GL   +  ++    D  ++GD AF L+D +G P+
Sbjct: 363 QDPRTVQRIKTVLADEEASFAKTWDVGLKHFNKAVADAV-DNTISGDNAFILHDRYGFPV 421

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +    GL  +D+  F+ A+       +A+ L  G     K +  + +        
Sbjct: 422 DLTCLLAENAGLR-VDMNGFHAAM-------KANQLSAGRVAAAKTFLDVHQ-------- 465

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKVE---- 512
                   + +K+      +     +    ++ VKAI   + G  V+  + G++ E    
Sbjct: 466 -------LEELKQMGIAPTEDAAKYIWKNRTAEVKAIFNKKTGTFVDMLMPGEEGEEDIG 518

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV-----ERGILRT 567
           ++ D T FYAE+GGQ+ DTG  +     +          G  VH   +         +  
Sbjct: 519 LIMDVTNFYAESGGQIYDTGRIVAAADAVFEVRKVYNLGGYVVHLGRMMTTNSTAVPIPV 578

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPDGLRFD 620
             S+ L +DY+ R  ++ NHS TH+L+  L  +L          V Q GS +T + LRFD
Sbjct: 579 TSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEEMLRFD 638

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVV 679
            +++  ++  +L  IE  +N+ I Q L V  + +  E A    G   + G KY D V V+
Sbjct: 639 FSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPDPVSVI 698

Query: 680 SV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA--- 725
           SV           E  +   ++   CGGTH+S+  E  +  I+SE ++  G+RRI     
Sbjct: 699 SVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKESEVAVILSEEALMKGVRRIVVATR 758

Query: 726 -------ITGQRARSHLMG------QDEKLKSLASFLK-------------VSQGNVVGR 759
                    G+               D   KSL+   K               +  + G 
Sbjct: 759 DAARKARARGELLEKEYRDIVAGGMTDSTAKSLSVLNKKVGDSLIPLTVKNSLREEIDGS 818

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQ 817
           +       + +     ++       +   +   +  F    +S+  ++   L++  D   
Sbjct: 819 IRAALANVKAMAAQLREKATVAGRAEAEAYDAVENPFFVKRLSDFGAEREALQAYADGFT 878

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
             +Q  + + +  +   KA  L+ + +     + +AVD A+ +      G GGG+PH AQ
Sbjct: 879 NAVQGDVGVFLFGTDANKALALVTLPKAFTAKKLSAVDWAKAAI-----GKGGGKPHAAQ 933

Query: 877 SGGPNGN---KADQAIAGVASF 895
           SG    +     ++A+A  A  
Sbjct: 934 SGLTAADVDVAMEKALAEAAKM 955


>gi|260784931|ref|XP_002587517.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae]
 gi|229272665|gb|EEN43528.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae]
          Length = 751

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/758 (34%), Positives = 393/758 (51%), Gaps = 55/758 (7%)

Query: 3   NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
               +R  F+++F+ K+ H  + SSS IP +DPTL+F N+GM  FK IF G   P     
Sbjct: 7   TGDQVRDMFIKYFEEKHEHLEVHSSSTIPLDDPTLLFANAGMNQFKPIFQGTVDPSHPMA 66

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+ A   AWDLL  
Sbjct: 67  KYRRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEACSWAWDLLVN 126

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + L+  R+Y+T +  +E        E  ++W  + G++ D+I+  +  DNFW M E GP
Sbjct: 127 GYKLEVERMYVTYFGGNEAQGLQPDLECRQIWLDL-GVAEDRILPGSMKDNFWEMGEVGP 185

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVFMQ  ++       LPK +ID GM
Sbjct: 186 CGPCSEIHYDRVGG-RDASHLVNMDVPEVLEIWNLVFMQNNREPDGSITNLPKKNIDCGM 244

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           GLER+ +V+Q   +NYD DLF     A ++ TG++               + +RV+ DH 
Sbjct: 245 GLERILSVVQGVLSNYDTDLFTPFFDAIQKATGVRPYTGKVGADDADGIDMAYRVLADHA 304

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+      +GSA+P
Sbjct: 305 RTLTISMSDGGKPDNVGRGYVLRRILRRGVRYATEKLNAPRGFFASLVDVAVQTLGSAFP 364

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
           E+ +   ++++ +  E+E+F KTL RG  +L+  ++ LG  +++ G+ A+ LYDT+G P+
Sbjct: 365 EITKDPQMVKDIINEEEEQFLKTLSRGRRVLEKRITQLGDSKVVPGETAWLLYDTYGFPV 424

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           D+   +   +GL  +D  ++    EE + +A+  S G G+G  + +   +   +   +  
Sbjct: 425 DLTSLMAEEKGLT-LDCAAY----EECKKQAQIRSQGKGAGVDDSVNLDV---HAINELQ 476

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
                      K   +         +    ++ V ++ +  + V+E   GQ+  V+ D+T
Sbjct: 477 EKGSPPTDDSPKY--QYSHDDNGNYVFQPCTATVVSLRRDKQFVQEVTQGQECGVLLDRT 534

Query: 519 PFYAEAGGQLGDTGCAIGDGIRL------QITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
            FYAE GGQ+ D G  + +   +      + T    +  G +V H     G L     + 
Sbjct: 535 NFYAEQGGQIYDEGYLVKEEDEVKRTAETEFTVKNCQVRGGYVMHIGTLVGTLNVGDKVK 594

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D   RR +  NH++TH+L+ AL  +LG    Q GS + PD LRFD +    +T+A++
Sbjct: 595 LFVDEARRRPIMSNHTSTHVLNFALRQVLGE-ADQRGSLVAPDRLRFDFSAKGAMTTAQI 653

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY-------- 683
           K  E   N+II +N  V  +      A A  G  A+    Y D VRV+S+          
Sbjct: 654 KEAEKICNEIIKKNEQVYAKEAALAQAKAIQGLRAVFDETYPDPVRVLSIGISVEDMLSD 713

Query: 684 ---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                G V S   CGGTH+   G    L IV+E +I  
Sbjct: 714 PTSPAGTVTSVEFCGGTHLQRVGHAGDLVIVTEEAIAK 751


>gi|50365429|ref|YP_053854.1| alanyl-tRNA synthetase [Mesoplasma florum L1]
 gi|59798527|sp|Q6F0K3|SYA_MESFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|50363985|gb|AAT75970.1| alanyl-tRNA synthetase [Mesoplasma florum L1]
          Length = 892

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/930 (31%), Positives = 465/930 (50%), Gaps = 99/930 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF++  H  L   SLIP  DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   TTNEIRKMWLDFFKEKNHHFLEPVSLIPVEDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  K F +
Sbjct: 65  NSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAISFAWELLTSDKWFAI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LYITV++ED EA++ W    G+  D I R+T + NFW + + GPCGP +EIFFD+G
Sbjct: 121 PVEKLYITVFNEDIEAYEYWINDIGIKQDHIFRLTRDTNFWDVGQ-GPCGPNTEIFFDRG 179

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       G        E +RYIEIWN+VF QF          LP+ +IDTG GLER+A+
Sbjct: 180 EKWDKENIGPRLLAEDIENDRYIEIWNIVFSQFNNDGFNNYSELPRKNIDTGAGLERIAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVN-----------HRVIVDHLRSS 282
           + Q+   N++ D+F   I+  E +     KY   N  +            +VI DH+R++
Sbjct: 240 IFQDTPTNFETDIFWPTIKQIENICDANFKYSIENYFDEKAEQTKINTAFKVIADHVRAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           SF IADG+ P N+ RGY++RR++RRA+     LG   P +  L+  +   M   YP L++
Sbjct: 300 SFAIADGVFPGNKDRGYIIRRLIRRALMKGMELGINGPFLSTLVINVIDVMKDFYPYLLE 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402
            + LIE T+  E+E+F KTL +G   L+ ++ +   D+ + G  A  L++++G P++   
Sbjct: 360 KQNLIETTILIEEEKFLKTLSKGYEALNKMIEN---DKKVTGKNALLLFESYGYPIEQTI 416

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +I   R +  ++I  FN  LE+ + +AR     L +   +   F+  +    ++F G++ 
Sbjct: 417 EIAEDRKVK-VEIEEFNSLLEQAKEQARNARKDLKAWDKQNEIFT--KINVESEFTGWEE 473

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      + +  I    EI+ EA   ++V V+ D+TPFYA
Sbjct: 474 TSHKN----------------------AKIVYIFTDDEILTEATD-KEVYVILDKTPFYA 510

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E GGQ  D G  +    R ++ D Q+      +H  +++ G ++    +   +D   R  
Sbjct: 511 EKGGQAADKGYLVNKEARCEVIDTQQGPNHQHIHKILLD-GSIKIGDQIDAFVDETKRTL 569

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NHS THL+H AL  +LG  V Q+GS     GLR D T++  I + EL + E  V D 
Sbjct: 570 TMKNHSGTHLIHSALRVVLGETVMQSGSYNDEHGLRMDFTYNDSIKAEELIAAEKLVLDK 629

Query: 643 IAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I + +       + +DA+   GA A    KY+D VRVV       G  SS LCGGTHV +
Sbjct: 630 INEKINREVYFCSMKDAVSKYGALAFFTEKYDDIVRVVKF-----GDFSSELCGGTHVDN 684

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSL-----ASFLKVSQGN 755
           T +I    I    S  +G+ R++ +T ++A   +L  +  KL  L     + +       
Sbjct: 685 TIDIEDFMITGLESKGSGVYRVKCLTSKKAINEYLNTEFNKLLKLIQEQNSKYENTKLIQ 744

Query: 756 VVGRVEEIWEE----------YRKLQLIHAKRKLQLNVEDLSCHKI-------------- 791
               +E I +E           ++L+LI  K    L + +     +              
Sbjct: 745 ADQNIENIVKESVTKTISKESIQELKLILEKLSAALKIYERKIEDLLTSKKLEQFKAFEP 804

Query: 792 ----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                 V  +   ++ ++ K++K+++D  + K +  II+L   ++E    V++ V+E + 
Sbjct: 805 ITNDKGVGTIEQQVNGLNIKDMKNLVDEYKNKFEKLIIILTSETEEGN-FVVVGVSEKIQ 863

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + ++A+++ +    +     GGG   +AQ 
Sbjct: 864 NEYSAIEIFK---NLTISPKGGGNSSLAQG 890


>gi|47937910|gb|AAH71378.1| Aars protein [Danio rerio]
          Length = 757

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/756 (35%), Positives = 397/756 (52%), Gaps = 56/756 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ LYDT+G PLD
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGFPLD 423

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +   I   RG+ G+D+++F    EE++  A+  S G GSG  + I   +   Y   +   
Sbjct: 424 LTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI---YAIDELRN 475

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +       K   K                 V A+ ++   V+E ++GQ+  V+ D+T 
Sbjct: 476 KGVAATDDSPKY--KYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECGVLLDKTS 533

Query: 520 FYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           FYAE GGQ  D G  + +       +   + + Q +  G  +H   V  G L+    L L
Sbjct: 534 FYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVR-GGYVLHIGTV-YGTLKVGDRLTL 591

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR +  NH+ATH+L++ L ++LG    Q GS + PD LRFD T    +++ E++
Sbjct: 592 HVDEARRRPIMSNHTATHILNYGLRSVLGE-ADQRGSLVAPDRLRFDFTAKGAMSTDEVR 650

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE---------- 682
             E+    +IA    V         A A  G  A+    Y D VRVVS+           
Sbjct: 651 RTEEIAAAMIADAKGVYALDAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVEELLADP 710

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
               G + S   CGGTH+ ++       IVSE +I 
Sbjct: 711 NSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIA 746


>gi|66819737|ref|XP_643527.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74860734|sp|Q86H43|SYAM_DICDI RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS
 gi|60471622|gb|EAL69578.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 932

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/926 (37%), Positives = 487/926 (52%), Gaps = 97/926 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           ++   +R TFL +F+KNGH+ LPS SL+P ND +L+FTN+GMV FKN FTG E+  Y+ V
Sbjct: 28  TSTKEVRETFLNYFEKNGHKRLPSGSLLPYNDNSLLFTNAGMVQFKNQFTGNEESKYKKV 87

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFD 119
           TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY  FK  +IQ AWDLLTKE+ 
Sbjct: 88  TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWDLLTKEYG 147

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFD 178
           L + RL I+V + DEE+ ++W+   GL  DKI+     DNFWSM +  GPCGPCSEIF+D
Sbjct: 148 LPKERLAISVLEGDEESAEIWRNQIGLPNDKIMYKGREDNFWSMGDGPGPCGPCSEIFWD 207

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMSIDTGMGLERMA 234
            G+ +         +GERY+EIWNLVFMQ+ +  K+   +    LP   +DTGMGLERMA
Sbjct: 208 HGKEV---------DGERYLEIWNLVFMQYNKSGKEGDEMPVDKLPIPCVDTGMGLERMA 258

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLRSSSF 284
           +VLQ K  NYDIDLF++LI + +++  M                   +RVI DHLRS SF
Sbjct: 259 SVLQGKFTNYDIDLFQNLINSFKEIVTMDVGRAQFQLQQDPQRVETAYRVIADHLRSISF 318

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           LI+DG++P N GRGYVLR+I+RRA+ Y ++LG+  P +  L P L  EMG  YP+LI+  
Sbjct: 319 LISDGVIPFNIGRGYVLRKIIRRALSYGKILGFNGPFLSTLFPLLEREMGDIYPQLIERS 378

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I   + +E+  F   + RG+  L+  +        LN +  F LY+T+GLPL++   +
Sbjct: 379 NEIRNVILNEEGTFYNAIQRGIPYLEEFVQQNK----LNEESLFLLYNTYGLPLEM-SQV 433

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT----------EKIWFSLKEKYGA 454
              +    ID+   N+ ++E R ++R       S +           EK + S K     
Sbjct: 434 KAKQNNIEIDMDKVNKLIDETREQSRLTWNTSSSSSDQTTQQTTQLPEKTFLSWKSDNIK 493

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
            +FIGY+                      + N  S ++++       +        V + 
Sbjct: 494 PKFIGYNGC--------------------VENDNSKVLRSHFDNDSHL--------VYLS 525

Query: 515 FDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAI---------VER 562
            D+TPFY  +GGQ+GD G  I         ++ +  K  EG  V                
Sbjct: 526 LDETPFYGTSGGQVGDVGELINVSSGKNVYRVINTIKPYEGGLVLVVEWDPSQQLASQVY 585

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L+ +  L   +D   R Q++++HSATHLLH AL  ++G  V Q GS +  + LRFD T
Sbjct: 586 QDLKQDSLLNCRVDRSIRNQVAVHHSATHLLHAALRNVIGKSVVQAGSLVGSESLRFDFT 645

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV 681
           H + +T  +++ IE  VND IA+++ + T  +  E A   S    L   KY++ VRVVS+
Sbjct: 646 HGQKLTPNQIEQIEQWVNDAIAKDIALNTDEIPYEQASKNSDTLQLFSEKYSELVRVVSI 705

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                   S  LCGGTHV  +  I    I+SESS+ AG RRIEA+ G  A +      + 
Sbjct: 706 PG-----FSKELCGGTHVERSSSIHQFKIISESSVAAGTRRIEAVAGLAATNFFKNHYQL 760

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---QLNVEDLSCHKIAD----- 793
           +  L++ +     N     E +     K +      KL   QL+  + +    +D     
Sbjct: 761 VHQLSNSINSPIVNFQQSFERLVNTNSKQEKEIFDLKLKIAQLSSVNYNGQYKSDNGGEM 820

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +    HII   D K    V +   K+  S  I L  ISK  K    ++ +        + 
Sbjct: 821 IPLSLHIIDCEDKKAFTKVTENFAKEFSSSPIQL-TISKGGKVLCQLLSSSSSSSSSLSA 879

Query: 854 D-LARLSAKVLGGGGGGGRPHMAQSG 878
           D + +   K +G G GGG   MA + 
Sbjct: 880 DTVLKQLFKSIGMGKGGGNKLMANAS 905


>gi|126653904|ref|ZP_01725751.1| alanyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126589629|gb|EAZ83768.1| alanyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 742

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/776 (34%), Positives = 415/776 (53%), Gaps = 62/776 (7%)

Query: 148 ADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE----EGERYIEIWNL 203
            +++IR+    NFW + E GP GP SEIF+D+G                E ERY+EIWNL
Sbjct: 1   EERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGVEYGSDENDPEMYPGGENERYLEIWNL 57

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           VF QF          LPK +IDTGMGLER+ +V+Q    N+D DLF  +I+  E+    K
Sbjct: 58  VFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQNVPTNFDTDLFMPIIEKIEEFANRK 117

Query: 264 YEGNNIVNH--------------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           Y+  + V+               +V+ DH+R+ +F I DG LP+NEGRGYVLRR++RRA+
Sbjct: 118 YKRPSEVDLNEIFGSEEDINTPFKVVADHIRTVAFAIGDGALPSNEGRGYVLRRLLRRAV 177

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            YA+ +G  +P M  L+P +   M   YPE+ +    I+  +++E+ RF +TLD GL + 
Sbjct: 178 RYAKQIGIEKPFMFELVPTVGKIMEGFYPEVTEKSEFIQRVIKNEEIRFHETLDGGLAIF 237

Query: 370 DGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           + V         + + G  AF+LYDT+G P+++ ++     G+  +D   F  A+EEQR 
Sbjct: 238 NEVAESQKAAGHDFIPGADAFRLYDTYGFPIELTEEYAEEVGMK-VDHEGFETAMEEQRE 296

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           RARA    + S   +     L     A++F+G+D L                        
Sbjct: 297 RARAARQDVDSMQVQNEV--LANLTVASEFVGFDTL-----------------------V 331

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
            ++ + A++  G++ + A  GQ+  V+  QTPFYAE GGQ+ D+G    D     + DVQ
Sbjct: 332 ANTEIAAMIVNGQVEKVASEGQEALVILAQTPFYAEMGGQIADSGIISNDSFTAVVKDVQ 391

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K   G  +H  +VE G +  E ++   ++  +R  +  NH+ATH++  AL  +LG HV+Q
Sbjct: 392 KAPNGQPLHTVVVESGEMHVEDAVQAIVNRDDRNLIIKNHTATHIMQRALKDVLGDHVNQ 451

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS + PD LRFD +H   +T  EL+ IE  VN+ +  ++ VV   M  + A   GA AL
Sbjct: 452 AGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNEKVWDDIEVVIEEMAIDKAKEMGAMAL 511

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G KY D VRVVS+     G +S  LCGG HV  + EI    IVSE  I AG RRIEA+T
Sbjct: 512 FGEKYGDVVRVVSI-----GDYSIELCGGIHVKRSSEIGFFKIVSEGGIGAGTRRIEAVT 566

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL- 786
           G+ A   +  ++  L   A+ LK +  ++V +V+ +  +Y++LQ  +     ++      
Sbjct: 567 GKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQALQGDYKELQRDNEALSQKIANAQAG 626

Query: 787 ----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +   I DV  +S  +   D+ +L+ +MD L+ K+   +I+L  +  + K  +   V
Sbjct: 627 AIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMDDLKVKMPKAVIVLGAVDGD-KVMLCAGV 685

Query: 843 TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +++L+   ++A ++ ++ A+   GG GGGRP MA +G    +K D+A+  V  ++K
Sbjct: 686 SKELVGGNYHAGNIVKMVAEAC-GGKGGGRPDMAMAGAKEASKLDEALLSVYDYVK 740


>gi|261749137|ref|YP_003256822.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497229|gb|ACX83679.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 887

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/919 (32%), Positives = 476/919 (51%), Gaps = 70/919 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR TFL+FFQ   H+++PS  +   +DPTL F N+GM PFK  F G +KP Y  +  VQK
Sbjct: 6   IRDTFLDFFQNKKHKIIPSFPIYLKDDPTLFFINAGMNPFKEYFLGHKKPEYTRIVNVQK 65

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R  GKHNDL+NVG  N HHT FEMLGN+SFG Y ++  I+ AW+LLTK +++ ++ LY
Sbjct: 66  CLRVSGKHNDLENVGHDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLTKVYNIPEKNLY 125

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           I+++  DE        E F+ WK    ++ + ++     +NFW M   GPCGPCSEI  D
Sbjct: 126 ISIFIGDEKEGLSMDKETFQHWKTF--INKENLVFFGKEENFWEMGSIGPCGPCSEIHID 183

Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            + +     +PG    +++  + IEIWNLVF++F +++      L    +DTGMGLER+ 
Sbjct: 184 LRNKEEKEKIPGKYLINKKNPKVIEIWNLVFIEFYRRSDGILEKLSTKHVDTGMGLERLC 243

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILP 292
            VLQ K ++YD D+F  +I+  ++  G  Y+   N  ++ R++ DHLR+  F I DG LP
Sbjct: 244 MVLQGKFSSYDTDIFFPIIRDIKESLGGIYKEEFNQDISIRIVADHLRALVFSIFDGQLP 303

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           +N G GYV+RR++RRA+ Y  R L   EP +   + +L   M +++PEL + K  I+  +
Sbjct: 304 SNNGAGYVIRRLLRRAVIYVTRFLYQKEPFIYKFVDSLVRRMKNSFPELEKKKDYIQNVI 363

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+  F + L++G   +  ++    +   ++L+G   F+LYDT+G PL + +       
Sbjct: 364 KEEESSFFQVLEKGYERIQHIILKAKERNQKVLDGKSLFQLYDTYGFPLKLSKIFAEENN 423

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           L  ID  SF + L +Q+ ++      +      KI  S +       FIGYD L     +
Sbjct: 424 LY-IDEKSFEKRLLKQKEKSHKKKNIIIKNDWIKI-HSNQFFSEKNNFIGYDFLECHILI 481

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
            + RK+                           ++       E+VF +TPFY E GGQLG
Sbjct: 482 IQYRKIE--------------------------DKIKENHYYELVFSKTPFYPEGGGQLG 515

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589
           DTG    D  ++ I   +K+   I +H  IV +  +         ++   R+++  NH++
Sbjct: 516 DTGFIKNDLEKIFIEKTKKE-NSIIIH--IVRKLPVNIYSRFQAIVNKNRRKKIEKNHTS 572

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           THLLH +L  ILG H+ Q GS +  D LRFD +H K IT  EL  IE+ V  +I  NLP+
Sbjct: 573 THLLHFSLKKILGEHIQQKGSYVGEDYLRFDFSHPKKITIEELFQIEEMVQKLIFSNLPL 632

Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              R +  ++AI  G   +   KY   VR ++         SS LC GTH  +TG I + 
Sbjct: 633 EERRSIPLQEAIKKGYNGIFYEKYEKEVRGITFG------DSSELCIGTHAKNTGCIQVF 686

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            IVSE S+  GIRRI+A T ++A  +L     + KSL   L  +  + +  +  + E+ +
Sbjct: 687 SIVSELSVSYGIRRIKAFTSEKAIQYLKSIHFQEKSLRKILN-NTESTIKSIFSLQEQNK 745

Query: 769 KLQLIHAKR--------KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
           KL+    K         K +  ++ +    I  +  +S    + D    K ++  L+  +
Sbjct: 746 KLKKKLEKLQFQQIKIFKKEYLLKAIQLPSITYICDISFEEKDFDLNLFKKIILDLRN-V 804

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
            S + M+VG  K+KK  + I +++ ++     +A  + R  +  + G   G +   A + 
Sbjct: 805 ISNLFMVVGFIKDKKPIIFISISDHIIKNKNIHANQIIRKMSDYIHGKSWG-KSFFATAI 863

Query: 879 GPNGNKADQAIAGVASFLK 897
           G N N     +     +LK
Sbjct: 864 GSNQNGLSLVLKTTKEYLK 882


>gi|145346253|ref|XP_001417607.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577834|gb|ABO95900.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 967

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/918 (31%), Positives = 441/918 (48%), Gaps = 97/918 (10%)

Query: 4   VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            S +R TF+ +F +K GH   PSS  +P NDPTL+F N+GM  +K IF G+  P      
Sbjct: 30  SSRVRDTFVNYFIEKQGHVNWPSSPAVPVNDPTLLFANAGMNQYKPIFLGKADPKTAFAK 89

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
               T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI +AWDLLT  
Sbjct: 90  LTRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGMAWDLLTNV 149

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L   RLY T +  DE        EA  +W K   L   +++     DNFW M + GPC
Sbjct: 150 YGLAPDRLYATYFGGDESQGLQPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPC 207

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D+           + +    +EIWN+VF+Q+ ++       LP   +DTGMG
Sbjct: 208 GPCTEIHYDRIGG-RDAASLVNMDDPNCLEIWNVVFIQYNREEGGVLKSLPSKHVDTGMG 266

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280
            ER+ ++LQ K +NYD D+F  + +  ++++G             G   + +RV+ DH+R
Sbjct: 267 FERLTSILQNKMSNYDTDVFMPIFKEIQRISGAAPYTGLLGKEDVGEKDMAYRVVADHIR 326

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+P L  ++G+ +PE
Sbjct: 327 TLSIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFHKLVPCLIQQLGAVFPE 386

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397
           L+  +  I E +  E+E FG+TL +G+     VL+   ++   +++G  AF L++++G P
Sbjct: 387 LVAKQTHITEIIADEEESFGRTLQKGIDQFGKVLAAAKQEGRTVISGPEAFLLWESYGFP 446

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
            D+ + +    G   +D   F QA  E + ++RA   G  SG  + ++ +        + 
Sbjct: 447 NDLTELMAEENGFT-LDNEGFAQAFAEAQEKSRAG--GKKSGGVQLLFEA--------EA 495

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE-VVFD 516
             +    G    K++ K    +P       + S V AI+     ++     +       D
Sbjct: 496 TAWLQNNGVAITKDEEKYASGRP------TLESTVTAIMSPSGFIKSTSDAEGPYGFFMD 549

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            T FYAE+GGQ+ D+G        + ++DV K A    +H   V  G +    +    +D
Sbjct: 550 ATTFYAESGGQVCDSGLITTPSGSMSVSDV-KVAAAYVMHTGDV-SGTVSVGDAAKCAVD 607

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           Y  R  +  NH+ TH+L++AL  ++G  V Q GS +  + LRFD +H+K  T+ ++  IE
Sbjct: 608 YDRRDNIMPNHTMTHVLNYALRKVMGDGVDQKGSLVDEEKLRFDFSHNKGATTKQIAEIE 667

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YE 684
             VN+ I   L V  R +  + A+  +G  A+ G  Y D VRVVSV             +
Sbjct: 668 AIVNEQIKSKLAVDKREVALDKAMTINGLRAVFGEVYPDPVRVVSVGPSIDDLLANPSDD 727

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL-- 742
               +S   CGGTH++ST       I+ ES I  GIRRI   T + A++ L    + L  
Sbjct: 728 KWKNYSIEFCGGTHLASTDFAEQFVILEESGIAKGIRRITGATREGAKAALARAADVLAL 787

Query: 743 -------------KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN------- 782
                        K L     V    V+  ++   EE R       KR L          
Sbjct: 788 VKSCDSLSGEALDKQLGVLKNVVDTEVLPVIQR--EEIRAAVTSQVKRVLDAQKEAAAAA 845

Query: 783 --------VEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
                    E  +  K A    F++ +    D+  +K            GI   +  + +
Sbjct: 846 KAQAIVDVQEKTAATKSAGAKYFVATLADGTDAGAMKEAAAVA---FAEGIACTLLANCK 902

Query: 834 KKASVLIVVTEDLLDRFN 851
            K  V   V  D+     
Sbjct: 903 GKEFVYCSVPPDVGIDVK 920


>gi|309800688|ref|ZP_07694829.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302]
 gi|308115695|gb|EFO53230.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302]
          Length = 730

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 266/772 (34%), Positives = 403/772 (52%), Gaps = 61/772 (7%)

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG-----SSEEGERYI 198
            G+    +I I   DNFW +   GP GP +EIFFD+GE       G        E +RYI
Sbjct: 1   MGVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYI 57

Query: 199 EIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
           EIWN+V  QF       + +   LP  +IDTG GLER+  V+Q    N++ DLF  +I+ 
Sbjct: 58  EIWNIVLSQFNADPAVPRSQYKELPHKNIDTGAGLERLVAVIQGAKTNFETDLFMPIIRE 117

Query: 256 SEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
            E+++G  Y+ + + ++ +VI DH+RS SF I DG LP NEGRGYVLRR++RRA  + + 
Sbjct: 118 VEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQK 177

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           LG  EP +  L+P +   M S YPE+++ +  IE+ ++SE+E F +TL  G     G+++
Sbjct: 178 LGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVA 237

Query: 375 HLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
            L +    ++ G   FKLYDT+G P+++ ++I    G+  +D   F  A++EQ+ RARA 
Sbjct: 238 DLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAGMT-VDREGFEAAMKEQQERARAS 296

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           ++  GS   +                           +  + +  +       + +SS +
Sbjct: 297 AVKGGSMGMQN--------------------------ETLQNITVESVFNYNASQLSSKL 330

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKA 550
            AIV     VE    G    ++F +TPFYAE GGQ+ D G  +     +   +TDVQK  
Sbjct: 331 VAIVADNAEVENVSEG-TASLIFAETPFYAEMGGQVADHGQILDAQGNVVATVTDVQKAP 389

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G  +H   V    L       L ID   R ++  NH+ATHLLH AL  ILG H +Q GS
Sbjct: 390 NGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILGHHATQAGS 448

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
               + LRFD TH + +T  EL++IE  VN+ I + + V T   + + A   GA AL G 
Sbjct: 449 LNEVEFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAIAVKTVETDIDTAKEMGAMALFGE 508

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           KY   VRVV++     G +S  LCGGTHV +T EI L  IV E  I +G RRI A+TG+ 
Sbjct: 509 KYGKEVRVVTI-----GDYSVELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKE 563

Query: 731 ARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--- 786
           A      Q++ LK +A+ LK  Q   V  +VE + E+ R+LQ  +A+ K +         
Sbjct: 564 AFEAYREQEDALKEVAATLKAPQLKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDV 623

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             +  +     +++  +S  D+  L++  D  ++K  S +++LV    +K   ++   T+
Sbjct: 624 FKNVQEANGHRYIASQVSVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTK 683

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           D     +A ++ +  A ++  G GGG+P MA +GG N  K  + +  VA  L
Sbjct: 684 D----VHAGNVIKELAPIV-DGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 730


>gi|219125523|ref|XP_002183027.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405302|gb|EEC45245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 959

 Score =  682 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/940 (31%), Positives = 458/940 (48%), Gaps = 115/940 (12%)

Query: 1   MSNVSSIRTTFLEFFQK--NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           +     +R+TF++FF++    H    SS+  P NDPTL+FTN+GM  FK +F GQ  P  
Sbjct: 7   VWTTDKVRSTFIDFFEQEPRSHTFQRSSACAPLNDPTLLFTNAGMNQFKPVFLGQVDPNS 66

Query: 59  Q-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
                      QKC+RAGGKHNDL++VGR   HHTFFEMLG++SFG YFK+ AI  AW L
Sbjct: 67  PLANVQRAVNSQKCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIDYAWQL 126

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+ + LD  RLY T +  D+        EA  LW +   L A ++I     DNFW M E
Sbjct: 127 LTEVYRLDPDRLYATYFQGDDALGLAPDFEARDLWLRY--LPAARVIGCDVRDNFWEMGE 184

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
            GPCGPCSEI +D+           + +  + IEIWN+VF+Q+ ++  +    LP   ID
Sbjct: 185 VGPCGPCSEIHYDRI-GNRDAAAFVNADDPQVIEIWNIVFIQYNREPDK-LQTLPAKHID 242

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIV 276
           TGMGLER+ ++LQ K +NYDID+F+ L       T         G          +R I 
Sbjct: 243 TGMGLERLVSILQNKDSNYDIDVFQPLFAKLATHTDRGPYTGRVGTDDVDLKDTAYRAIA 302

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DH R+ +F IADG +P NEGRGYVLRRI+RRA  Y +  L         L+P +    G 
Sbjct: 303 DHARTLAFAIADGAVPNNEGRGYVLRRILRRATRYGQQILHCAPGFFATLIPVVVETFGE 362

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL--NGDVAFKLYDT 393
            YPEL  A+  I E ++ E++ FG  LDRG+     +   L ++++L  +G+ AF +YDT
Sbjct: 363 TYPELRAAESTILEIVQEEEQAFGDMLDRGIKFFTELEGELKENKVLEISGEKAFFMYDT 422

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G P+D+ + +    GL+ +D+  F  A+E Q++R+R       +G    +         
Sbjct: 423 LGFPVDLTELMAQEAGLS-VDMAGFANAMETQKTRSRQAQKTARAGNAPVLEL------- 474

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQK 510
                     + +  + ++               + + V A+  +   +     A  G  
Sbjct: 475 -------VAEQTAWLVDQNVLPTDDGFKYKWDVQLPATVMALYGKDGFLTGDSTADQGDF 527

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           V +V D++ FYAEAGGQ  D G             R  +TDVQ    G  +H   VE G 
Sbjct: 528 VGIVLDKSSFYAEAGGQEADVGTLEFLDEAGTITGRFTVTDVQ-VYAGFLLHKGAVEEGS 586

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +  + ++   +DY+ RR ++ NHS TH+L+ AL  +LG    Q GS    + LRFD  H 
Sbjct: 587 IAVDQAVNCKVDYERRRMIAPNHSMTHVLNAALRNVLGEKCDQRGSLCNNEKLRFDFAHK 646

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683
           + +T  E+K++E+     +A   PV +++M+  DA A  G  A+ G  Y D VRV+++  
Sbjct: 647 RAMTMLEIKAVEEFCQKSVADAQPVKSKVMSLADAQAIDGVRAVFGEVYPDPVRVIAI-- 704

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL------MG 737
             G   S   CGGTH+ +T E     +V E+++  GIRR+ A+T   A+  L        
Sbjct: 705 --GDSSSVEFCGGTHLENTAEAEAFVLVEETAVAKGIRRVTAVTKDAAKRALAGGVKFQA 762

Query: 738 QDEKLKSL-----------------------ASFLKVSQGNVVGRVEEIW---------- 764
             +K++ L                       ++ LK     +  R+E I           
Sbjct: 763 LVDKIEQLPATTSGLYKQAGSARKDLDAAFVSAVLKA---ELRTRLEAIQKKANDAAKKA 819

Query: 765 -EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            ++   L L   K+ + + +E+     + +V+  +      DSK  + VM+ +++     
Sbjct: 820 LQQRVDLVLNDVKKDVAVALEEKMQTLVLNVDIAA------DSKASQRVMNTVKEIAPEM 873

Query: 824 IIMLVGISK---EKKASVLIVVTEDLLDRFN--AVDLARL 858
             + V  ++     K     VV + L++ F+  A +  R 
Sbjct: 874 AFLGVSEAESGSGGKIMAFAVVPDRLMEEFDLRADEWIRA 913


>gi|328872010|gb|EGG20380.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 1018

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/908 (36%), Positives = 477/908 (52%), Gaps = 91/908 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IR+TFL +F +NGH+ +  SSLIP ND TL+FTN+GMV FK  F   E P    VTT QK
Sbjct: 36  IRSTFLNYFNENGHKKVDGSSLIPHNDSTLLFTNAGMVQFKQCFAALETPPAPMVTTAQK 95

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRR 124
           CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY   K  AI+ AW LLT    L   R
Sbjct: 96  CVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYKHAKRDAIRHAWQLLTGPMGLPANR 155

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET-GPCGPCSEIFFDQGECI 183
           +  +V + DEEA  +W+   GL+ D+I+R    DNFWSM +  GPCGPCSE+F+D+GE  
Sbjct: 156 IVASVLEGDEEAADIWRTEIGLTDDRILRCGPKDNFWSMGDGAGPCGPCSELFWDRGE-- 213

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
                G+  +GERY+EIWNLVFMQ+ + +      LP   +DTGMGLERMA VLQ+K +N
Sbjct: 214 -----GNEMDGERYLEIWNLVFMQYWRDDAGNLTPLPTPCVDTGMGLERMAAVLQDKQSN 268

Query: 244 YDIDLFKHLIQASEQVT--------GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           Y+IDLF +LI   + V         G  +      + RVI DHLRS SFLIADG++P+  
Sbjct: 269 YEIDLFANLIDGIKSVAEKNDSVFVGKVHADKFETSMRVIADHLRSVSFLIADGVVPSAT 328

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLR+I+RRA+ Y +++G+ +P +  L P L + MG  Y +L Q    I+  + +E+
Sbjct: 329 GRGYVLRKIIRRALSYGQMIGFQQPFLHLLQPLLTSLMGDFYTQLSQRAPQIQNVIYNEE 388

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             F + + RG+  LD ++     DE       F +Y T+GLPL+I +       +  ID+
Sbjct: 389 ILFYQAIQRGVTYLDDLIDSNKLDEW----NVFNIYSTYGLPLEISEVKARQSNI-NIDM 443

Query: 416 ISFNQALEE-QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
               Q ++E +     +      +  T +I    K +   + F+GY+ L  +  +K    
Sbjct: 444 DKVQQFIDETKEKSKSSWKKDQSNNNTNQILQKWKNENIKSNFVGYEKLHCTTRIKAQHF 503

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                                               + VV +  PFYA +GGQ+GD G  
Sbjct: 504 S------------------------------EEDNLLYVVLEDCPFYAVSGGQIGDKGII 533

Query: 535 ---IGDGIRL-QITDVQKKAEGIFVHHAIVER---------GILRTEMSLVLTIDYQNRR 581
              +G+G  +  + D  K  +G+ V     +            L+ +  +   +D Q R+
Sbjct: 534 VTSVGNGENIYNVIDTLKPYDGVQVVVIEFDSTKQRLNQVMDDLKVDNKVDCRVDKQTRQ 593

Query: 582 QLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           Q +I+H+ATHLLH AL   LG + V Q GS + P+ LRFD T    +++ ++ +IE  VN
Sbjct: 594 QTAIHHTATHLLHSALRKELGENSVVQAGSYVGPESLRFDFTAVGKLSNKQITNIEQTVN 653

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I Q++P+  + M++ DA+ + A  L   KY D VRVVSV        S   CGGTHV 
Sbjct: 654 QAIQQDIPLDVQEMSQGDAVKTDAIQLFSEKYGDSVRVVSVPG-----VSKEFCGGTHVG 708

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG+I L  IVSE+SI AG RRIEA  GQ A + L      +  LA+ L V    V   V
Sbjct: 709 KTGDIQLFRIVSETSIAAGTRRIEARAGQAAATWLDSFKSTVDGLATKLGVPTNIVGKHV 768

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------------IADVNFMSHIISEVDSK 807
           E + +  ++L+   ++ + Q+    +  H                 ++ +S   + +D  
Sbjct: 769 ESLIDNKKQLEKQVSELQQQILFNSIKTHNGKIQLDGNNNNSIACSLHLLSGQSTTIDKN 828

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-- 865
            L+ +   L K   + I +L+         +  V ++      +A +  +L  ++L    
Sbjct: 829 TLQEISKKLAKTQPNHIHILLTTEATDNKLICTVGSQLEKQEVSA-NADKLLKQLLTNTI 887

Query: 866 --GGGGGR 871
             G GGG+
Sbjct: 888 KFGKGGGK 895


>gi|156054306|ref|XP_001593079.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980]
 gi|154703781|gb|EDO03520.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 936

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/961 (31%), Positives = 461/961 (47%), Gaps = 112/961 (11%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R  FL FF+K+ H ++PSSS++P NDPTL+FTN+GM  FK IF G           + +
Sbjct: 15  VRKEFLNFFEKHAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTV----GKTDDMAQ 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
             RA     DLD+VG+ + HH+                 AI +AW+LLTK + LD  RLY
Sbjct: 71  LKRAVDTQKDLDDVGKDSYHHS----------------DAIAMAWELLTKVYGLDPDRLY 114

Query: 127 ITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ D         EA +LW K +G+  D I+     DNFW M ETGPCGPCSEI +D
Sbjct: 115 VTYFEGDSENNVPADTEAKELWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCSEIHYD 173

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +           +++    +EIWN+VF+QF++Q  +    LP   IDTGMG ER+ +VLQ
Sbjct: 174 RIGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERLVSVLQ 233

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADG 289
           +K++NYD D+F  L    ++VT  +   +             +RVI DH+R  +F I+DG
Sbjct: 234 DKSSNYDTDVFSPLFAKIQEVTQARPYTDKYGKDDTDGIDTAYRVIADHIRLLTFAISDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLI 347
            +P NEGRGYV+RR++RR   YAR     E       +LPAL  +MG  +PE+++ +  +
Sbjct: 294 GVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVKKQQDV 353

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405
           +E L  E+E F +TLDRG  + +   +   K   + L+G   ++LYDT G P D+ + + 
Sbjct: 354 KEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDLTKIMA 413

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             RGL           +E  + +AR  S  +           + +               
Sbjct: 414 EERGLETD-----EGEIEIAKEKAREASKSVKEAAHTFAKLDVHQIAELDNIGIARTNDD 468

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYA 522
           +KF K D                +  V+ I      ++      S +   ++ D+T FYA
Sbjct: 469 AKFSKGDS---------------TGKVQLIYDGKSFLKSTADLPSDKPFGILLDKTNFYA 513

Query: 523 EAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ+ DTG  I DG+   ++ D Q    G  VH+  ++ G  +    ++   D   R+
Sbjct: 514 EQGGQVFDTGKIIIDGVAEFKVLDTQ-AYGGYIVHNGYMDYGNFKAGDEVICEYDELRRQ 572

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ TH+L+HAL   LG  ++Q GS +  + LRFD +H   +T  ELK IED+ N 
Sbjct: 573 PIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHKAQVTLPELKKIEDSSNS 632

Query: 642 IIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-----------DGGVH 689
            I QN  + ++ ++ + A A  G  A+ G  Y + VRVVSV  E           +    
Sbjct: 633 YIKQNCKIYSKDVDLDTAKAIEGVRAVFGETYPNPVRVVSVGVEIDVLLAEPKNPEWRKV 692

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748
           S   CGGTHV  TG I  L IV ES I  GIRRI A TG  A        E  K +A+  
Sbjct: 693 SVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAHEIQRVASEFGKRIAALD 752

Query: 749 -----------LKVSQGNVVG----------------RVEE-IWEEYRKLQLIHAKRKLQ 780
                      +K +Q ++                  +V++ + +E +K Q   +K  L 
Sbjct: 753 AMPHGVEKEQEVKATQNDLNHLTISVLTKEDLKKKFTKVQKDVLDEQKKKQKAESKTALD 812

Query: 781 LNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV- 838
                 +  K  D + +++ +    +SK +  VM+  + K +   + L G S  + A V 
Sbjct: 813 TVTAHFADPKNKDSIAYIAQLPISANSKAIAEVMNHFKSKAKEKTVYLFGGSASEGAVVH 872

Query: 839 -LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + V T+      +A   A   ++V+GG  GG  P      G N +K D A+A    +  
Sbjct: 873 GVYVGTDAASKGVSAEQWAAAVSEVIGGRSGGKEPTR-TGQGTNADKIDDAVAVAEKWFA 931

Query: 898 K 898
           +
Sbjct: 932 E 932


>gi|154288058|ref|XP_001544824.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1]
 gi|150408465|gb|EDN04006.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1]
          Length = 910

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/966 (30%), Positives = 446/966 (46%), Gaps = 148/966 (15%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R  FL+FF++NGH  +PSSS++P +DPTL+FTN+GM  +K+IF G   P       +  
Sbjct: 17  VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+
Sbjct: 77  HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T ++ +         EA +LW  + G++ D ++     DNFW M E GPCGPCS
Sbjct: 137 PARLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EI +D+           +++    +EIWN VF+Q+ ++  +    LP   +DTGMG ER+
Sbjct: 196 EIHYDRIGGRNASH-LVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERL 254

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSF 284
            ++LQ K++NYD D+F  L     ++TG +                 +RV+ DH+R+ +F
Sbjct: 255 VSILQNKSSNYDTDVFTPLFGKISEITGCRPYTGKFHDEDTDGIDTAYRVVADHVRTLTF 314

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQ 342
            I+DG  P NEGRGYV+RR++RR   YAR     E       ++P L  +MG  +PE+ +
Sbjct: 315 AISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRR 374

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDI 400
            +  + E L  E+  F KTLDRG  L +     +       L+G   ++LYDT G P+D+
Sbjct: 375 KQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGKLHGADVWRLYDTFGFPVDL 434

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            + +   RGL  ID   F +A    R +A+  S G G  T + +  ++ +          
Sbjct: 435 TRLMAEERGLT-IDNAEFEEA----RLKAKEASKGQGKRTADVVKLTVHD---------- 479

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQ 517
                      +      +        ++S +KAI      V+       G++  ++ D+
Sbjct: 480 ----LGLLETMEDVPKTNEDAKFGRGNITSQIKAIYYNKNFVDSTKHIPQGEQFGIILDR 535

Query: 518 TPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  DTG  I DG   L + DVQ   +GI  + ++V    LR +        
Sbjct: 536 TNFYAEQGGQENDTGKIIIDGKAELAVEDVQVLGDGIEHNGSLVAAEKLRFD-------- 587

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                                                        +H   ++ ++L+ IE
Sbjct: 588 --------------------------------------------FSHKSAVSDSDLEKIE 603

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----------- 684
               D I QN  V  + +    A   SG  A+ G  Y D VRVVSV  E           
Sbjct: 604 RISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQNVHDP 663

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A        E  + 
Sbjct: 664 RWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKEFGER 723

Query: 745 LASFLKV---SQGNVVGRV--------------------------EEIWEEYRKLQLIHA 775
           L  F K+    Q  +  ++                          +++ E  +  Q + +
Sbjct: 724 LRRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQKLES 783

Query: 776 KRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833
           K+ L          +     + +  +    + K L   ++ ++ K+Q   + +    KE 
Sbjct: 784 KKALDAITGYFEAPENKVAPHLVMQLPISANPKALSDSLNFVKTKMQDKSVYVFAADKEA 843

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K      V + L +      D A   + ++ GG  GG+  ++   G    K D+AI   
Sbjct: 844 GKVVHGCHVAQALSEQGATPNDWANTVSSIV-GGRAGGKAPISIGNGTEAEKLDEAIKAA 902

Query: 893 ASFLKK 898
             +L+K
Sbjct: 903 TEYLEK 908


>gi|327304957|ref|XP_003237170.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326460168|gb|EGD85621.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 934

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/958 (31%), Positives = 458/958 (47%), Gaps = 115/958 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFL++F+KNGH            DP     NS     K                 QK
Sbjct: 23  VRDTFLDYFEKNGHTF-------GTVDP-----NSDFAQLK------------RAHNSQK 58

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY
Sbjct: 59  CIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 118

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCSEI +D
Sbjct: 119 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 177

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+ ++LQ
Sbjct: 178 RIGGRNAAH-LVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVSILQ 236

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADG 289
            K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F I DG
Sbjct: 237 NKSSNYDTDVFTPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAITDG 296

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLI 347
             P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ + +  +
Sbjct: 297 AAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIRRKQTDV 356

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E L  E+  F KTLDRG    +             L+G   ++LYDT G P+D+ + + 
Sbjct: 357 MEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLHGADVWRLYDTFGFPVDLTRLMA 416

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             R L  ID   F +A    R +A+  S G     ++ +  ++              L  
Sbjct: 417 EERQLT-IDDAEFEEA----RLKAKEASKGQAKTASDLLKLTVHTL---------STLEK 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYA 522
           +   K D      K        + + +KAI    E+++      + +++ ++ D+T FYA
Sbjct: 463 NGVPKTDDDAKFGK------GNIVANIKAICHGKEVIDSTKDIPANEQIGIILDKTNFYA 516

Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S++   D   R 
Sbjct: 517 EQGGQEYDTGKIVIDGQAELDVQNVQMY-GGYVLHTGFIKYGNFSVNDSVIAEYDELRRW 575

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ TH+L+ AL  +LG  V Q GS +  + LRFD +H   I+ ++L+ IE    D
Sbjct: 576 PIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTD 635

Query: 642 IIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-----------DGGVH 689
            I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E                
Sbjct: 636 YIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPRWEGV 695

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------------- 736
           S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A                  
Sbjct: 696 SIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIAREFGERLNRFE 755

Query: 737 ------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQLNVE 784
                  +D ++KSL   L     + V + +      +I ++    Q    K +++  ++
Sbjct: 756 KMPASPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVKTAID 815

Query: 785 DLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            +S          + +  +    + K +   ++ ++ K+ SG  + V  +   K +    
Sbjct: 816 AISAYFEENTESPSLVIKLPITANQKAISESLNHVKTKL-SGKALYVFAADASKVAHGCY 874

Query: 842 VTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L+K
Sbjct: 875 VTPDLTTKGASANEWASAVSSIV-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYLEK 931


>gi|330752142|emb|CBL87102.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 834

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/883 (33%), Positives = 455/883 (51%), Gaps = 73/883 (8%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MF N+GM PFK+IF G +K     V   QKC+R  GKHNDL+ VG    HHT FEMLGN+
Sbjct: 1   MFVNAGMNPFKDIFIGSKKSENGRVANTQKCLRVSGKHNDLEEVGHDTYHHTLFEMLGNW 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSA 148
           SFG YFKE AI  AW+LLT+ + LD+ R+YITV++ D         ++ K W K   + +
Sbjct: 61  SFGDYFKEEAIDWAWELLTEVYGLDENRIYITVFEGDLSDGLKRDIDSEKAWLK--HVQS 118

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC----IPGGLPGSSEEGERYIEIWNLV 204
            +I+  +  DNFW M E GPCGPCSEI FD           G    +E+  + IE+WNLV
Sbjct: 119 SRILSGSKKDNFWEMGEVGPCGPCSEIHFDLRNEAERKKIDGALLVNEDHPQVIELWNLV 178

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           F++F++ +      LP   +DTGMGLER+   +  K +NYD D+F   I     ++  +Y
Sbjct: 179 FIEFQRVSDGNLSPLPDKHVDTGMGLERLVRAIGMKESNYDTDIFTPYINKLSDLSNKEY 238

Query: 265 EGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPL 321
             +    ++ RVI DH+R+ S  IADG LP+N G GYV+RRI+RRA+ Y    LG+ +P 
Sbjct: 239 GTDETVDISFRVISDHIRAVSMAIADGQLPSNIGAGYVIRRILRRAVRYGYSNLGFRKPF 298

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
           ++ LLP L + +   +PEL     ++   +R E+  F +TL+ GL  LD  +S   K+ I
Sbjct: 299 LIDLLPVLSSSLSKTFPELEIQISMVTAVIREEELSFLRTLESGLKRLDDAISE-SKNAI 357

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G  AF+LYDT+G PLD+ + I   +    +D   F+  ++ Q+ R+R+ S        
Sbjct: 358 ISGIRAFELYDTYGFPLDLTKLICSEK-RYNVDEDQFHLEMKNQKDRSRSASSKKVGDWI 416

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
           E             +FIG++       +   R +                          
Sbjct: 417 EMS------SGRGDEFIGFEANSSKSKLIRYRHI-------------------------- 444

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
             E+  G+ ++V+   TPFY E GGQ+GD G    +G  + + +  K+  G+ +HH   E
Sbjct: 445 --ESSKGKSIQVLIAPTPFYPEGGGQVGDIGIIKFEGQEINVKETTKET-GMIIHHLYDE 501

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             +      +   ++ +NR ++S NHSATHL+H+AL  ILGSHV Q GS +  +G RFD 
Sbjct: 502 PKVWSKN--VFAQVNMKNRERVSENHSATHLVHYALRKILGSHVEQRGSLVHAEGFRFDF 559

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVS 680
           +H + +++A++ SIE  V  +I   +       +    A   GA AL G KY D VRVV 
Sbjct: 560 SHFQKVSNAQINSIESLVRSLITDKIKTQIHNEIPINSAKKMGAMALFGEKYGDFVRVVQ 619

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                    S  LCGGTHV  T  I+   I SES + AGIRRIEA++G  A  +L+ + +
Sbjct: 620 FG------ESVELCGGTHVEDTSNILTFIIKSESGVAAGIRRIEALSGAAAIDYLLDKSK 673

Query: 741 KLK-SLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVN 795
           +   +L    +V       +++ +  +     +KL   +  R   L  E +   K     
Sbjct: 674 RYDLALKESNQVDPEE---KIKSLKVQVLGIEKKLISFNQMRVSNLKSELIKSSKDYGTL 730

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +   I +++S  +K ++  ++    + +++L+ +  + +  + + V  D     NA + 
Sbjct: 731 KVVAEIIDLESSYVKDLVFLIKDNYPTAVVLLLSVIGD-RVQMHLGVGSDSTPHVNAGNW 789

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  +  + GG GGG+P  A SGG   +  +  I      +++
Sbjct: 790 VKELSLFIKGG-GGGQPSYASSGGKFPDGVNDLIDEFYKKIER 831


>gi|237842821|ref|XP_002370708.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211968372|gb|EEB03568.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 1037

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/968 (30%), Positives = 453/968 (46%), Gaps = 126/968 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ            V
Sbjct: 29  VRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRRV 88

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + + 
Sbjct: 89  ADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKIP 148

Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY + +           DEEA  +W +   L A++++     +NFW MA+TGPCGPC
Sbjct: 149 KDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGPCGPC 206

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGMGLER
Sbjct: 207 SEIHYDRIGG-RDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGMGLER 265

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN---------IVNHRVIVDHLRSS 282
           +A+VLQ+K +NYD DLF  L     +++ G++  G            + +RV+ DH R  
Sbjct: 266 VASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADHARCL 325

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +PE+ 
Sbjct: 326 TAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETFPEMK 385

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLD 399
           + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G PLD
Sbjct: 386 KNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYGFPLD 445

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYGATQFI 458
           + Q +    GL  +D   F +  +  R+ +   S    G+G    +    +     ++ +
Sbjct: 446 LTQLMAEEVGL-QVDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQSRKV 504

Query: 459 -GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-----GQK-V 511
              D     ++  +D+  L  +  ++    + + V AI        E  +     G+  V
Sbjct: 505 PPTDDSAKYEWNVKDQAALMTQDAVEA-APIKAKVMAIWDGKRFAPEVTAVASPTGENLV 563

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            V+ D+T FYAE GGQ+GD G  +        ++ D QK  +   +H   + +G LR   
Sbjct: 564 AVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGD-FILHIGSMSKGTLREGT 622

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTI----------------------------- 600
            LV  +DY  R +L+ +H+ THLL+ AL  +                             
Sbjct: 623 ELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGIRICES 682

Query: 601 --------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
                    G  + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ  PV  +
Sbjct: 683 CLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPVHYK 742

Query: 653 IMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-------------DGGVHSSALCGGTH 698
            +  E A+   G  A+ G  Y D VRVVSV  +             +    S  LCGGTH
Sbjct: 743 EVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCGGTH 802

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHLMGQ 738
           + +  ++    I+SE S+  G+RR+                       +   A   L   
Sbjct: 803 LHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPRELAAL 862

Query: 739 DEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDLSCH 789
           ++++      L        V + ++V ++E+  +   +LQ   +K   K    + +    
Sbjct: 863 EKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEELGT 922

Query: 790 KIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
           +     F+   + ++  D K L +    L +       +LV  S     + +  V     
Sbjct: 923 EHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLVTASAATGTAAIAFV-PAAC 981

Query: 848 DRFNAVDL 855
            + +A   
Sbjct: 982 SQLHAASW 989


>gi|209877330|ref|XP_002140107.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
 gi|209555713|gb|EEA05758.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66]
          Length = 984

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/960 (31%), Positives = 452/960 (47%), Gaps = 119/960 (12%)

Query: 7   IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----A 60
           +R  F++FF     H+   S+S+IP NDPTL+FTN+GM  FK+IFT   +P  +      
Sbjct: 16  VRQQFIDFFVNKANHKFYRSASVIPLNDPTLLFTNAGMNQFKSIFTETVEPNSELSKLVR 75

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A++LLTK +++
Sbjct: 76  VVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIKWAFELLTKVYEI 135

Query: 121 DQRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
              RLY+T +           DEEA  +W     L  ++II  +  +NFW MA+ GPCGP
Sbjct: 136 PSERLYVTYFGGDDKLPACPVDEEARDIWMNY--LPKERIISCSAKENFWEMADVGPCGP 193

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           CSEI FD+           +++    IEIWNLVFMQ+ ++      +LP   +DTGMGLE
Sbjct: 194 CSEIHFDRIGG-RDASHLVNKDDPSVIEIWNLVFMQYYRETDGSLVLLPAKCVDTGMGLE 252

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV----------TGMKYEGNN-IVNHRVIVDHLR 280
           R+ +VLQ K +NYD DLF  +      +           G K + N   +++RVI DH+R
Sbjct: 253 RLVSVLQNKLSNYDTDLFIPIFNQIHSIFPNIPQYKGMVGDKDDPNKIDMSYRVIADHIR 312

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE----PLMMHLLPALCTEMGSA 336
           + S  I+DG +P+NEGRGYVLRRI+RRA+ Y R               L+ ++   +G  
Sbjct: 313 TLSVAISDGCIPSNEGRGYVLRRILRRAVRYGRQYFNAGMDGNMWFYKLVDSVSNILGDY 372

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------------ILNG 384
           YPE+++ K  I+  +  E+++F KTL +G+   + V + L K              I   
Sbjct: 373 YPEIVEKKDTIKSAIFEEEKQFSKTLGKGIERFNRVTNKLLKSSSPINSKLKNIRLIFPA 432

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
           + AF+LY T+G P+D+ + I    G+   D   F + +E  +  +         G   K 
Sbjct: 433 NEAFQLYSTYGFPMDLTELIASELGME-FDHEGFKKCMENHQLAS--------EGKFNKK 483

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
              L  K    Q I          +K    +       +L N     + AI    E+++ 
Sbjct: 484 LDKLVLKPDIQQHI---------LLKYGLNLTDDIYKYNLNNECFGKLFAIYNGHELIDT 534

Query: 505 AVSGQK-VEVVFDQTPFYAEAGGQLGDTGCA---IGDGIRLQITDVQKKAEGIFVHHAIV 560
           A      V ++FD+T +Y+E+GGQ+ D G       +    Q+ D QK      +H  +V
Sbjct: 535 ATCFHGIVGLIFDKTCYYSESGGQVSDIGYIELWEDNLNNFQVIDCQK-FGNYVLHIGVV 593

Query: 561 ERGILRTEMS-LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             G      S     ID   R     NH+ATHLL++AL  +LG    Q GS + P  LRF
Sbjct: 594 LEGKFSVGDSNCHFLIDKDRRVMTMRNHTATHLLNYALRLLLGEKCDQRGSIVEPTKLRF 653

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678
           D + +K +   E++ IED +N II     V   ++    A   SG  A+ G  Y D VRV
Sbjct: 654 DFSANKALNINEIQQIEDIINKIIKDKQEVFCDVVPLNIAKEISGLRAIFGEAYPDPVRV 713

Query: 679 VSVEYEDGGVHSS--------------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +SV      ++                 LCGGTHV +T +I    I+SE  I  GIRRI 
Sbjct: 714 LSVGIPVNELNDCNFGASKSLHIKTSVELCGGTHVLNTYDIGSFIILSEEGIAKGIRRIV 773

Query: 725 AITGQR---ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR------------- 768
           A+T      A  + +    K + L +      G  + +   + +E R             
Sbjct: 774 AVTNDTANVAEDNTLILTSKFEQLKNIFGKELGKEITKCRVLLDETRILPLIKRKYLSQF 833

Query: 769 ------------KLQLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDS--KELKS 811
                       KL+    +   Q   +D+      D+   N +   I EVD   K ++ 
Sbjct: 834 LDNQYQRVLDDAKLKQKERQSAAQKVAQDILSQLSKDLNIGNILVRNIQEVDGDIKCIEI 893

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           +   + K+      ML+      K  +  L +V +       A      + ++ GG  GG
Sbjct: 894 ISQYIIKEFPKVSFMLLTSGSCNKNGISALAIVPQGEGKLLKANQWLHSTLEICGGKCGG 953


>gi|221485680|gb|EEE23961.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
          Length = 1037

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/970 (30%), Positives = 446/970 (45%), Gaps = 130/970 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ            V
Sbjct: 29  VRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRRV 88

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + + 
Sbjct: 89  ADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKIP 148

Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY + +           DEEA  +W +   L A++++     +NFW MA+TGPCGPC
Sbjct: 149 KDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGPCGPC 206

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGMGLER
Sbjct: 207 SEIHYDRIGG-RDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGMGLER 265

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN---------IVNHRVIVDHLRSS 282
           +A+VLQ+K +NYD DLF  L     +++ G++  G            + +RV+ DH R  
Sbjct: 266 VASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADHARCL 325

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +PE+ 
Sbjct: 326 TAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETFPEMK 385

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLD 399
           + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G PLD
Sbjct: 386 KNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYGFPLD 445

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +    GL  +D   F +  +  R+ +   S   G        ++L           
Sbjct: 446 LTQLMAEEVGL-QVDAEEFERKFDAHRAASENTSFKQGGAGA---VYALPPDQRHLLAQS 501

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLT----NGVSSIVKAIVQQGEIVEEAVS-----GQK 510
             +       K +  V+ Q   +         + + V AI        E  +     G+ 
Sbjct: 502 RKVPPTDDSAKYEWNVMNQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGEN 561

Query: 511 -VEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
            V V+ D+T FYAE GGQ+GD G  +        ++ D QK  +   +H   + +G LR 
Sbjct: 562 LVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGD-FILHIGSMSKGTLRE 620

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI--------------------------- 600
              LV  +DY  R +L+ +H+ THLL+ AL  +                           
Sbjct: 621 GTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGLRIC 680

Query: 601 ----------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
                      G  + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ  PV 
Sbjct: 681 ESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPVH 740

Query: 651 TRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-------------DGGVHSSALCGG 696
            + +  E A+   G  A+ G  Y D VRVVSV  +             +    S  LCGG
Sbjct: 741 YKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCGG 800

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHLM 736
           TH+ +  ++    I+SE S+  G+RR+                       +   A   L 
Sbjct: 801 THLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPRELA 860

Query: 737 GQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDLS 787
             ++++      L        V + ++V ++E+  +   +LQ   +K   K    + +  
Sbjct: 861 ALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEEL 920

Query: 788 CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             +     F+   + ++  D K L +    L +       +LV  S     + +  V   
Sbjct: 921 GTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLVTASAATGTAAIAFV-PA 979

Query: 846 LLDRFNAVDL 855
              + +A   
Sbjct: 980 ACSQLHAASW 989


>gi|303282971|ref|XP_003060777.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545]
 gi|226458248|gb|EEH55546.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545]
          Length = 972

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/925 (29%), Positives = 451/925 (48%), Gaps = 81/925 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            + IR TFL+FF+   H ++PSS ++P +DPTL+F N+GM  FK+IF G+  P       
Sbjct: 13  ANKIRQTFLDFFESKEHAVVPSSPVVPHDDPTLLFANAGMNQFKSIFLGKADPKGPLAKL 72

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
              T  QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG +FK  AI  AW+LLT  +
Sbjct: 73  KRATDTQKCIRAGGKHNDLDDVGKDTYHHTYFEMLGNWSFGDFFKREAIHWAWELLTSKE 132

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD+ RLY + +  DE        EA  +W ++  L  +K++     DNFW M + GP
Sbjct: 133 HYGLDESRLYASYFGGDESQGLPPDLEARDIWLEV--LPPNKVLPFGCEDNFWEMGDVGP 190

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWN+VF+QF ++       LP   +DTGM
Sbjct: 191 CGPCSEIHYDRIGG-RDAADLVNADDPNCLEIWNIVFIQFNREEGGVLKPLPAKHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHL 279
           G ER+A++LQ+K +NYD D+F  + +   +VT         G + EG   + +RV+ DH+
Sbjct: 250 GFERIASILQDKMSNYDTDVFTPIFERIREVTGAPPYTGLLGAEDEGEKDMAYRVVADHI 309

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ +F IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+  +    G  +P
Sbjct: 310 RTLTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAEQGFFQKLVAVVVELFGHVFP 369

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396
           E+++ +  + + +  E+E FG+TL +G+     + +   +D   +++G  AF L+++ G 
Sbjct: 370 EIVKHEKRVTDIIADEEESFGRTLLKGIDQFKKIAAKAKEDGGAVVDGAAAFLLWESFGF 429

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    G+  +D   F+ A +E + ++RA   G  S     ++ +    +    
Sbjct: 430 PIDLTEIMAEENGMT-VDTAGFDAAFKEAQEKSRAG--GKKSDGPSLLFEAEATSWLQKN 486

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN-GVSSIVKAIVQQGEIVEEAVSGQK-VEVV 514
              +   +      +        P  D      S++VKAI+     VE     +  + +V
Sbjct: 487 GSKWGKAKDIAHAHDAIPFTDDSPKYDGPEADPSAVVKAILTLNGFVESTEGVEGPIGLV 546

Query: 515 FDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLV 572
            D+T FYAE+GGQ+ D G    + G  L + +V K A G  +H    VE   +    +  
Sbjct: 547 LDRTSFYAESGGQVCDVGVITTENGASLAVNEV-KVAAGFVLHSGERVEGEAITVGNTCA 605

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             +DY  R  ++ NH+ TH+L+ AL ++LG  V Q GS +  + LRFD +H+KP+++ E+
Sbjct: 606 ARVDYDRRANIAPNHTMTHVLNFALRSVLGDGVDQKGSLVDDEKLRFDFSHNKPMSNNEI 665

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY-------- 683
           K +E+ V + +  +L V  R +   DA   SG  A+ G  Y D VRVVSV          
Sbjct: 666 KRVEEIVRERVGASLAVDAREVALADAKTISGLRAVFGEVYPDPVRVVSVGPTIDELLAN 725

Query: 684 ---EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
              E+   +S   CGGTH+++T +     ++ E+ I  GIRR+ A T   A + L     
Sbjct: 726 PGSEEWTKYSIEFCGGTHLANTSQAEGFVLLEEAGIAKGIRRVVAATRGGAVAALATAAG 785

Query: 741 KLKSLASFLKVSQG-NVVGRVEEIWEEYR-----KLQLIHAKRKLQLNVEDL-------- 786
               + +   +  G  +   +  +  +        +Q    + ++    + L        
Sbjct: 786 IAARVDACDAMPPGPELDKEMAALKNDVDTAVMPAVQRAEIRDRMAATTKKLIAAAKEAA 845

Query: 787 ----------------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
                                 +  F+  +    D   LK    A+  K      +    
Sbjct: 846 VAVKAAAKKAVEEKTAEVKAAGETVFVMRLGDGADPGALKDAA-AVAFKQDVACALFSAD 904

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL 855
           + + KA   +          +    
Sbjct: 905 TVKGKAMCYVSAPPSATPAIDVKKW 929


>gi|308803402|ref|XP_003079014.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS)
            [Ostreococcus tauri]
 gi|116057467|emb|CAL51894.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS)
            [Ostreococcus tauri]
          Length = 1170

 Score =  677 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/949 (30%), Positives = 452/949 (47%), Gaps = 108/949 (11%)

Query: 7    IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
            +R TF+ +F +K  H   PSS  +P +DPTL+F N+GM  +K IF G+  P         
Sbjct: 249  VRDTFINYFIEKQNHTPWPSSPAVPVDDPTLLFANAGMNQYKPIFLGKADPKTALAKLSR 308

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLTK + L
Sbjct: 309  ATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTKVYCL 368

Query: 121  DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             + RLY T +  DE        EA  +W K   L   +++     DNFW M + GPCGPC
Sbjct: 369  PEDRLYATYFGGDESQGLEPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPCGPC 426

Query: 173  SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            +EI +D+           + +    +EIWN+VF+Q+               +DTGMG ER
Sbjct: 427  TEIHYDRIGG-RDASSLVNMDDPNCLEIWNVVFIQY-------------THVDTGMGFER 472

Query: 233  MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRSSS 283
            + ++LQ K +NYD D+F  + +  +++TG             G   + +RV+ DH+R+  
Sbjct: 473  LTSILQNKPSNYDTDVFMPIFKEIQRITGASPYTGLLGKSDVGEKDMAYRVVADHIRTLC 532

Query: 284  FLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
              IADG  P ++GR YVLRR++RRA+ + R  LG  +     L+P +  ++G  +PELI+
Sbjct: 533  IAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFAQLVPIVVKQLGYVFPELIE 592

Query: 343  AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400
             K  I E +  E+  FG+TL++G+     VL    K+   +++G  AF L++++G P D+
Sbjct: 593  KKKHIVEIIAEEETSFGRTLEKGIAQFKKVLDAATKEGRTVISGPEAFLLWESYGFPNDL 652

Query: 401  MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            ++ +    G   +D   F +A  E + ++RA     G          L  +  AT ++  
Sbjct: 653  VELMAEEVGFT-LDNEGFAKAFAEAQEKSRAGGKKSGG-------VQLLFEAEATAWLQN 704

Query: 461  DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE-VVFDQTP 519
            + +  +   ++                 +S V AI+     V+     +     V + T 
Sbjct: 705  NDVSTTNDSEKYAV---------GRPSHTSTVAAILTPSGFVKSTADAEGPYGFVLNSTT 755

Query: 520  FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
            FYAE+GGQ+ DTG        + + DV K A G  +H   V  G +    +    +DY+ 
Sbjct: 756  FYAESGGQVADTGAISTPNGSVSVEDV-KVAAGFVLHTGEV-SGTVSVGEAATCAVDYER 813

Query: 580  RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
            R  +  NH+ TH+L++AL  + G  V Q GS +  + LRFD + +K +T+ ++  IE  V
Sbjct: 814  RENIMPNHTMTHVLNYALRKVAGDGVDQKGSLVDEEKLRFDFSLNKGLTTKQIADIEAVV 873

Query: 640  NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGG 687
            N+ I   L V  R +    A+  +G  A+ G  Y D VRVVSV             E   
Sbjct: 874  NEQINAKLSVDKREVALAKAMTINGLRAVFGEVYPDPVRVVSVGPSIDELLADPINEKWV 933

Query: 688  VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
             +S   CGGTH+ +T       ++ E+ I  GIRRI A T   A+  +   +E + ++ +
Sbjct: 934  NYSIEFCGGTHLQTTDFAEQFVVLEETGISKGIRRITAATRGTAKKAIARANELMATVKA 993

Query: 748  --------------FLKVS--------------QGNVVGRVEEIWEEYRKLQLIHAKRKL 779
                           LKV+              +  +  +++ + E  ++       + L
Sbjct: 994  CDALSGEALNTELNVLKVAIDTGSMPTVAREQIREELNRQIKRLLEAAKEAAAAAKAQAL 1053

Query: 780  QLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                E  +  K A    F++ +  E D+  ++          + G+   +    + K  V
Sbjct: 1054 VDVQEKTAATKTAGAKYFVASLADETDAGAMREAATIA---FKEGVACTLFSKVKGKEFV 1110

Query: 839  LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             + V  D+            S   LGG GGGG+  +AQ  GPN      
Sbjct: 1111 YVSVPPDVSIDVKG--WLAASCAPLGGKGGGGKNGVAQGQGPNVEAVGD 1157


>gi|221502948|gb|EEE28658.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 1037

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/970 (30%), Positives = 446/970 (45%), Gaps = 130/970 (13%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61
           +R  +LEFF+  GH + PSS +IP  D TL+F N+GM  FK IF GQ            V
Sbjct: 29  VRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRRV 88

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDL++VG+   HHTFFEMLGN+SFG YFK  AI  AW LLT+ + + 
Sbjct: 89  ADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKIP 148

Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY + +           DEEA  +W +   L A++++     +NFW MA+TGPCGPC
Sbjct: 149 KDRLYASYFGGDPRLPSCPPDEEARDIWLQY--LPANRVLPFGAKENFWEMADTGPCGPC 206

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D+           + +    +EIWNLVFMQ+ ++       LP   +DTGMGLER
Sbjct: 207 SEIHYDRIGG-RDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGMGLER 265

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN---------IVNHRVIVDHLRSS 282
           +A+VLQ+K +NYD DLF  L     +++ G++  G            + +RV+ DH R  
Sbjct: 266 VASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADHARCL 325

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELI 341
           +  IADG  P+NEGRGYVLRRI+RRA+ YAR  LG  E     L+P + + +G  +PE+ 
Sbjct: 326 TAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETFPEMK 385

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLD 399
           + +  +   L  E+++F +TLD G+     V + L     ++  G  AF LY T+G PLD
Sbjct: 386 KNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYGFPLD 445

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           + Q +    GL  +D   F +  +  R+ +   S   G        ++L           
Sbjct: 446 LTQLMAEEVGL-QVDAEEFKRKFDAHRAASENTSFKQGGAGA---VYALPPDQRHLLAQS 501

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLT----NGVSSIVKAIVQQGEIVEEAVS-----GQK 510
             +       K +  V+ Q   +         + + V AI        E  +     G+ 
Sbjct: 502 RKVPPTDDSAKYEWNVMNQAALMTQDAVEAAPIKAKVMAIWDGKRFAPEVTAVASPTGEN 561

Query: 511 -VEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
            V V+ D+T FYAE GGQ+GD G  +        ++ D QK  +   +H   + +G LR 
Sbjct: 562 LVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGD-FILHIGSMSKGTLRE 620

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTI--------------------------- 600
              LV  +DY  R +L+ +H+ THLL+ AL  +                           
Sbjct: 621 GTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNGIRIC 680

Query: 601 ----------LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
                      G  + Q GS +    LRFD    KP+ + ++ ++E+ V D IAQ  PV 
Sbjct: 681 ESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQARPVH 740

Query: 651 TRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-------------DGGVHSSALCGG 696
            + +  E A+   G  A+ G  Y D VRVVSV  +             +    S  LCGG
Sbjct: 741 YKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIELCGG 800

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIE--------------------AITGQRARSHLM 736
           TH+ +  ++    I+SE S+  G+RR+                       +   A   L 
Sbjct: 801 THLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLASAPRELA 860

Query: 737 GQDEKLKSLASFLK-------VSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDLS 787
             ++++      L        V + ++V ++E+  +   +LQ   +K   K    + +  
Sbjct: 861 ALEKEVAKARGLLDGAGPLPLVGKRSLVKQLEQAQKALLELQKARSKELVKEAKKLGEEL 920

Query: 788 CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             +     F+   + ++  D K L +    L +       +LV  S     + +  V   
Sbjct: 921 GTEHKTKPFLVLNLPQLLGDGKALDAASQTLHQAAPDLPFLLVTASAAAGTAAIAFV-PA 979

Query: 846 LLDRFNAVDL 855
              + +A   
Sbjct: 980 ACSQLHAASW 989


>gi|157886445|emb|CAP09517.1| novel protein similar to vertebrate alanyl-tRNA synthetase like
           (AARSL) [Danio rerio]
          Length = 996

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/963 (31%), Positives = 454/963 (47%), Gaps = 81/963 (8%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
               +R  F++FF +  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P     
Sbjct: 35  TSKRVRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMV 94

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+
Sbjct: 95  SYRRVVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTE 154

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           E+ +  +RLY++ +          DEE   +W  + GL AD ++     DNFW M ETGP
Sbjct: 155 EYGIPAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGP 213

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D        L   + +    +EIWNLVFMQ+ +++      LP+ S+DTGM
Sbjct: 214 CGPCTEIHYDHIGNRNAAL-LVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGM 272

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHL 279
           GLER+ TVLQ K +NYD DLF  L+ A  Q          TG        + +RV+ DH+
Sbjct: 273 GLERLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHI 332

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+    IADG+ P   G   VLRRI+RRA+ ++  +L   E  +  L+P +   +G AYP
Sbjct: 333 RTICVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYP 392

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLP 397
           EL      I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G P
Sbjct: 393 ELNTESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFP 452

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD++  +L  +G   +D     + LE++  +     LGL S   E       + +   + 
Sbjct: 453 LDLIDLMLEEKG-KIVDKKEM-KVLEDEYEK-----LGLQSEEDEGEKLDQLDLHSLAEL 505

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
               +       K    V      +       + V A+   G +V E   GQ   V+ DQ
Sbjct: 506 QRQRVPHTDDSPKYCYSVGSDGQYV--FEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 563

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G    DG++  +  V+  +  G +V H +     LRT   + L +D
Sbjct: 564 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 623

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ +E
Sbjct: 624 EAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQKVE 683

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV--------SVEYEDGGV 688
           + V +II QN  V    +    A        +   Y D VRVV         +  E    
Sbjct: 684 ELVLNIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQ 743

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSL 745
            S  LC GTH+  TG I    +VSE  +  G+ RI A TG    +AR       E+L+SL
Sbjct: 744 TSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESL 803

Query: 746 --------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLI--HAKRKL 779
                         A  L    G+++  V+          E+    + +     ++ RKL
Sbjct: 804 EARMGLSNTLSIQEAKRLSKEVGHLINAVDITPMPQWKRLELQTRLKAMLKSSNNSIRKL 863

Query: 780 QLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           ++    L   ++ D +    ++ ++        L   +  L K     ++ML    +   
Sbjct: 864 EIKEAALKAKELLDKHSNKPVVVDLIQTDSISVLMKTVVQLSKSTPKSLVMLFSHWESSG 923

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +   +        +A++ A      L GG   G    A+  G N  K +  +A +  +
Sbjct: 924 KLLCACLVPKGSTGGSAIEWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILHW 980

Query: 896 LKK 898
            ++
Sbjct: 981 AEE 983


>gi|171687707|ref|XP_001908794.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943815|emb|CAP69467.1| unnamed protein product [Podospora anserina S mat+]
          Length = 911

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/928 (31%), Positives = 440/928 (47%), Gaps = 96/928 (10%)

Query: 43  MVPFKNIFTGQE-----KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G           +     QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+S
Sbjct: 1   MAQFKPLFLGTVGKTEPMAALKRAADTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+ AI   W+LLTK + LD  RLY+T ++ +E        EA +LW    G+  D
Sbjct: 61  FGDYFKKEAIGWTWELLTKVYGLDPNRLYVTYFEGNEAMGLEPDLEAKQLWLD-QGVPED 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            I+     DNFW M + GPCGPCSE+ +D+           +++    +EIWN VFMQ++
Sbjct: 120 HILPGNMKDNFWEMGDQGPCGPCSEVHYDKVGGRNAAH-LVNQDDPLVVEIWNNVFMQYD 178

Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN- 268
           +Q  +    LP   IDTG+G ER+ + LQ K++NYD D+F  L     +V+G +   +  
Sbjct: 179 RQKDRSLKPLPAKHIDTGLGFERLVSALQHKSSNYDTDVFAPLFAKIVEVSGSRPYSDKY 238

Query: 269 --------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT-- 318
                       RV+ DH+R  SF IADG +P N GRGYV+RR++RR + YAR       
Sbjct: 239 GKDDVDGVDTALRVVADHIRLLSFSIADGAVPGNIGRGYVVRRVLRRGVRYARKYLNANI 298

Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378
                 +LPAL  +MG  +PEL + +  I+E L  E+  F  TLDRG  + +   +   K
Sbjct: 299 GSFFSQILPALVEQMGEQFPELKKKEADIKEILDEEEVAFAVTLDRGEAMFEKYAAAATK 358

Query: 379 --DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
             ++ L+G   ++LYDT G P+D+ + +   RGL  ID      A E+ R  ++A     
Sbjct: 359 AGEKKLSGADVWRLYDTFGFPVDLTKLMAEERGLT-IDEEEVKVAQEKAREASKA----- 412

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
                         K   T F    +   S+   +                    ++ I 
Sbjct: 413 -------------VKEAVTTFPKLTVHHISELENDRNIPRTDSEAKYSAQSSEGKIQLIF 459

Query: 497 QQGEIVE---EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEG 552
              E +E   +      + ++ D+T FYAE+GGQ+ DTG  I D     ++ D Q+   G
Sbjct: 460 NGSEFIENSKDVPPKTPLGIILDKTNFYAESGGQVADTGRIIIDDEAEFKVLDTQE-FGG 518

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             VH   +E G L+    +    D   R+ +  NH+ TH+L+HAL  +LG  V+Q GS +
Sbjct: 519 YVVHSGFLEYGNLKAGDVVKCEFDELRRQPIRNNHTGTHVLNHALREVLGDTVNQAGSLV 578

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671
             D LRFD +H   +T  E+K IE+  N  I +NL V  + +   +A   +G  A+ G  
Sbjct: 579 DQDKLRFDFSHKTQVTLPEIKRIEELSNADIRKNLKVYAKDVALSEAREINGLRAVFGET 638

Query: 672 YNDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D VRVVSV              +    S   CGGTHV +TG I  L IV ES I  GI
Sbjct: 639 YPDPVRVVSVGASVEEMLKDPKNPEWRQFSVEFCGGTHVDATGLIKDLIIVEESGIAKGI 698

Query: 721 RRIEAITG---QRARSHLMGQDEKLKSLAS---------FLKVSQGNVVGRV-------- 760
           RRI A TG    +A+       ++L  +A+          +K +  ++   V        
Sbjct: 699 RRIVAYTGAGAHQAQQDAKDFSDRLDHIAALEFGPEKVSLVKAASVDLDALVISVLTKEE 758

Query: 761 ---------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELK 810
                    + + +E +K Q   +   L    +  +  K  D   F+ H+    ++K + 
Sbjct: 759 LRKKFATIQKSVLDEQKKRQKAESGTALSTVQKFFADEKNKDAKAFVGHLPISANAKAIS 818

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            VM   + K ++  + L   SK++     + V  DL     A        +++ GG  GG
Sbjct: 819 EVMTYYKSKDKAKSVYLFAGSKDEAVVHGVYVGTDL-KGVTAEQWTAAVTEII-GGKTGG 876

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +    Q  G N  K D+A+     +L++
Sbjct: 877 KEPSRQGAGSNPEKLDEAVTKAQQWLEE 904


>gi|326678670|ref|XP_001332388.4| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Danio rerio]
          Length = 1001

 Score =  674 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/963 (31%), Positives = 454/963 (47%), Gaps = 81/963 (8%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
               +R  F++FF +  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P     
Sbjct: 40  TSKRVRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMV 99

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            Y+ V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+
Sbjct: 100 SYRRVVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTE 159

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
           E+ +  +RLY++ +          DEE   +W  + GL AD ++     DNFW M ETGP
Sbjct: 160 EYGIPAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGP 218

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D        L   + +    +EIWNLVFMQ+ +++      LP+ S+DTGM
Sbjct: 219 CGPCTEIHYDHIGNRNAAL-LVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGM 277

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHL 279
           GLER+ TVLQ K +NYD DLF  L+ A  Q          TG        + +RV+ DH+
Sbjct: 278 GLERLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHI 337

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+    IADG+ P   G   VLRRI+RRA+ ++  +L   E  +  L+P +   +G AYP
Sbjct: 338 RTICVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYP 397

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLP 397
           EL      I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G P
Sbjct: 398 ELNTESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFP 457

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD++  +L  +G   +D     + LE++  +     LGL S   E       + +   + 
Sbjct: 458 LDLIDLMLEEKG-KIVDKKEM-KVLEDEYEK-----LGLQSEEDEGEKLDQLDLHSLAEL 510

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
               +       K    V      +       + V A+   G +V E   GQ   V+ DQ
Sbjct: 511 QRQRVPHTDDSPKYCYSVGSDGQYV--FEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 568

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G    DG++  +  V+  +  G +V H +     LRT   + L +D
Sbjct: 569 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 628

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ +E
Sbjct: 629 EAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQKVE 688

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV--------SVEYEDGGV 688
           + V +II QN  V    +    A        +   Y D VRVV         +  E    
Sbjct: 689 ELVLNIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQ 748

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSL 745
            S  LC GTH+  TG I    +VSE  +  G+ RI A TG    +AR       E+L+SL
Sbjct: 749 TSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESL 808

Query: 746 --------------ASFLKVSQGNVVGRVE----------EIWEEYRKLQLI--HAKRKL 779
                         A  L    G+++  V+          E+    + +     ++ RKL
Sbjct: 809 EARMGLSNTLSIQEAKRLSKEVGHLINAVDITPMPQWKRLELQTRLKAMLKSSNNSIRKL 868

Query: 780 QLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           ++    L   ++ D +    ++ ++        L   +  L K     ++ML    +   
Sbjct: 869 EIKEAALKAKELLDKHSNKPVVVDLIQTDSISVLMKTVVQLSKSTPKSLVMLFSHWESSG 928

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +   +        +A++ A      L GG   G    A+  G N  K +  +A +  +
Sbjct: 929 KLLCACLVPKGSTGGSAIEWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILHW 985

Query: 896 LKK 898
            ++
Sbjct: 986 AEE 988


>gi|32490983|ref|NP_871237.1| hypothetical protein WGLp234 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173144|sp|Q8D2W8|SYA_WIGBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|25166189|dbj|BAC24380.1| alaS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 873

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/897 (35%), Positives = 494/897 (55%), Gaps = 65/897 (7%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR  FL FF +  H+++ SS+LIP ND TL+FTNSGM  FK+IF G +KP Y  
Sbjct: 1   MKKTTEIRNIFLNFFYEKKHKIMDSSTLIPDNDKTLLFTNSGMNQFKDIFLGFKKPKYIR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           V T Q+C+R GGKHNDL+ +G+TNRHHTFFEMLGNFSFG YFK   IQ AW+LLT  K F
Sbjct: 61  VATAQRCIRVGGKHNDLNMIGKTNRHHTFFEMLGNFSFGSYFKSDTIQFAWELLTSKKWF 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           DL + +L +T+Y +D E++ LW + + ++   II I          DNFW+M +TGPCGP
Sbjct: 121 DLSKEKLIVTIYYKDIESYNLWVEKTNINPKNIIFIKDKNNILYNSDNFWTMGDTGPCGP 180

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           CSEIF+  G+ I           E YIEIWNLVFMQF      +   LP  SIDTGMGLE
Sbjct: 181 CSEIFYFFGKSI--NYKNIKIYDEEYIEIWNLVFMQFNLHLNGKLSRLPITSIDTGMGLE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ VLQ+  +NY IDLFK LI    ++  +K   N   + R+I DH+RS+ FLI DG++
Sbjct: 239 RISCVLQKVNSNYSIDLFKKLIYEISKIIEIKNIKN--YSLRIIADHIRSAIFLIYDGVI 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+ EGRGYVLRRI+RRA+ +   +         L+      M     ++I+ K  IE  +
Sbjct: 297 PSKEGRGYVLRRIIRRAIFHGNYILNKSCFFYKLVSPAINIMSYIDSKIIKKKKEIENII 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E++ F  ++ +G+ +         K+ IL G++AFKL+DT G P+D+  DI     + 
Sbjct: 357 KEEEKIFFFSIKKGM-IFLNKNLKKIKNNILKGEIAFKLHDTFGFPIDLTNDICIKNKI- 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F  A+ EQ++++  +S         K    L   Y  T+F GY  L+       
Sbjct: 415 NVDEKGFFHAMNEQKNKSYKNSC------FNKFNLKLLNNYC-TKFCGYSYLK------- 460

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             S +  I    E ++E    Q+  ++ D+TPFY E+GGQ+GD+
Sbjct: 461 ----------------CESQILNIYNLKEEIKEIKENQEGIIILDKTPFYGESGGQVGDS 504

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G          + D  KK    F H+  V +GIL+    +   ++   R ++S+NHS+TH
Sbjct: 505 GEIKSKDGVFSVIDT-KKLGNYFYHYGKVIQGILKINNKITAYVNKIKRNKISLNHSSTH 563

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LLH+A++ +L  ++ Q GS I    L FD ++ K I   ++  IE+ +N+ I  N+ + +
Sbjct: 564 LLHYAINCLLDKNIIQKGSLICEKYLSFDFSYGKKINIEKINEIENIINEKIRDNVIIHS 623

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M+ ++A+  GA AL   KY D VRV+++     G  S  LCGGTH + TG+I    I 
Sbjct: 624 NNMDLKNALKIGAKALFKNKYKDLVRVLNI-----GDFSIELCGGTHANRTGDIGCFVIT 678

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           + S I +   RI+AITG+ A + +  +   + +++S +K +   +V ++E+I E  + L+
Sbjct: 679 NFSKISSDTYRIKAITGETAIAFIQKKFNDINTISSLIKSNSNEIVNKIEKITENLKILE 738

Query: 772 LIHAKRKLQLNVE--DLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGII 825
             +   K ++      L  +KI  +N    I+     E+D   L+ +++ ++  +++GI+
Sbjct: 739 KKNKNLKNKIIKNYIKLIFNKIKKINNFEIIMDYFNEEIDKIILREILNKVKTNLKNGIV 798

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLA---RLSAKVLGGGGGGGRPHMAQSGG 879
           +L  I K+    ++  VT +L++   A ++    +    +     GGG  + A++ G
Sbjct: 799 ILASIKKDN-LYIVTGVTNNLVNIITAKEIISYFKEIKSI----KGGGNSYFAEAVG 850


>gi|297678244|ref|XP_002816983.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial-like
           [Pongo abelii]
          Length = 985

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/956 (29%), Positives = 444/956 (46%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VG+   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWVSYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    +            + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDLAGGVGA---------PQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ ++  +L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSVEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +L  +G+  +D     + A EE + RAR        G    +W  +    G  Q  G   
Sbjct: 456 MLEEKGV-QLDSAGLERLAQEEAQHRARQAEPVKKQG----LWLDVHA-LGELQRQGVPP 509

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S    +    L      +     + +++   + G  V     GQ+  ++ D+T FYA
Sbjct: 510 TDDS---PKYNYSLQPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G  +  G    +  V + +  G F+ H  V    L+    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS ++P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLSPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D V            +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ AITG   Q+AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L     +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKIADVNFMS-HIISEVDSKELKSVMD---ALQKKIQSGIIMLVGISKEKKASVL 839
                 ++ + +     I+  V ++ L  ++     L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPVGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +     F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGATPTFTAEAWALAVCSHIGGKAWGSR-VVAQGTGSTTD-LEAALSIARTY 980


>gi|38569417|ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]
 gi|124297995|gb|AAI31729.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|208967617|dbj|BAG72454.1| alanyl-tRNA synthetase 2, mitochondrial [synthetic construct]
          Length = 985

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/956 (29%), Positives = 444/956 (46%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    +            + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDLAGGVGA---------PQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ +   +L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +L  +G+  +D     + A EE + RAR        G    +W  +    G  Q  G   
Sbjct: 456 MLEEKGV-QLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVHA-LGELQRQGVPP 509

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S    +    L      +     + +++   + G  V     GQ+  ++ D+T FYA
Sbjct: 510 TDDS---PKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D V            +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ A+TG   Q+AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L +   +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKIADVNFMS-HIISEVDSKELKSVMD---ALQKKIQSGIIMLVGISKEKKASVL 839
                 ++ + +     I+  V ++ L  ++     L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980


>gi|6331226|dbj|BAA86584.1| KIAA1270 protein [Homo sapiens]
          Length = 986

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/956 (29%), Positives = 444/956 (46%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 47  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 106

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 107 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 166

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 167 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 225

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    +            + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 226 HYDLAGGVGA---------PQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 276

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 277 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 336

Query: 287 ADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ +   +L      +  L+P +   +G AYPEL +   
Sbjct: 337 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 396

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 397 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 456

Query: 404 ILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +L  +G+  +D     + A EE + RAR        G    +W  +    G  Q  G   
Sbjct: 457 MLEEKGV-QLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVHA-LGELQRQGVPP 510

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S    +    L      +     + +++   + G  V     GQ+  ++ D+T FYA
Sbjct: 511 TDDS---PKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 567

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D   R 
Sbjct: 568 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 627

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 628 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 687

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D V            +    +     S 
Sbjct: 688 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 747

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ A+TG   Q+AR       +++K+    
Sbjct: 748 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 807

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L +   +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 808 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 867

Query: 784 EDLSCHKIADVNFMS-HIISEVDSKELKSVMD---ALQKKIQSGIIMLVGISKEKKASVL 839
                 ++ + +     I+  V ++ L  ++     L ++  S  ++L+      K    
Sbjct: 868 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 927

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 928 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 981


>gi|74742244|sp|Q5JTZ9|SYAM_HUMAN RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|57209007|emb|CAI40747.1| alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119624673|gb|EAX04268.1| alanyl-tRNA synthetase like [Homo sapiens]
          Length = 985

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/956 (29%), Positives = 444/956 (46%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    +            + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDLAGGVGA---------PQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DGI P   G   VLRRI+RRA+ +   +L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +L  +G+  +D     + A EE + RAR        G    +W  +    G  Q  G   
Sbjct: 456 MLEEKGV-QLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVHA-LGELQRQGVPP 509

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S    +    L      +     + +++   + G  V     GQ+  ++ D+T FYA
Sbjct: 510 TDDS---PKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D V            +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ A+TG   Q+AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L +   +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKIADVNFMS-HIISEVDSKELKSVMD---ALQKKIQSGIIMLVGISKEKKASVL 839
                 ++ + +     I+  V ++ L  ++     L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980


>gi|255587004|ref|XP_002534095.1| alanyl-tRNA synthetase, putative [Ricinus communis]
 gi|223525858|gb|EEF28289.1| alanyl-tRNA synthetase, putative [Ricinus communis]
          Length = 815

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/839 (33%), Positives = 435/839 (51%), Gaps = 67/839 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151
           MLGNFSFG YFK+ AI+ AW+L TKEF L   RL+++VY +D+EAF++W    G+  ++I
Sbjct: 1   MLGNFSFGDYFKKEAIKWAWELSTKEFGLAADRLWVSVYKDDDEAFEIWHNEVGVPTERI 60

Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            ++   DNFW+   TGPCGPCSE+++D      G L     +  R+IE +NLVFMQ+ + 
Sbjct: 61  KKMGEEDNFWTSGITGPCGPCSELYYDFHPE-RGFLDVDLGDDTRFIEFYNLVFMQYNKM 119

Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNN 268
           +      L + +IDTG+GLER+A +LQ+  NNY+ DL   +I+   ++  + Y   +   
Sbjct: 120 DDGSLESLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKVSELANLSYSVADDQT 179

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-------- 320
               ++I DHLR+  FLI+DG+LP+N GRGYV+RR++RR +   RLLG            
Sbjct: 180 KTKLKIIGDHLRAIVFLISDGVLPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGKGNLDGA 239

Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---- 376
            +  +   +         ++      I E L+ E+ RF +TL+RG  LLD +L       
Sbjct: 240 FIPAIAEKVIELSVHIDSDVKARASRILEELQREEFRFVQTLERGEKLLDQMLEDALSSG 299

Query: 377 GKDEILN---GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
            K  ++    G   F LYDT+G P++I  ++    G+  ID+  F+  +E+QR +++A  
Sbjct: 300 QKKGVIPCLSGKDVFLLYDTYGFPVEITTEVAEEHGVK-IDMDGFDIEMEKQRRQSQAAH 358

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +     +     L E    T+F+GYD L                          +++ 
Sbjct: 359 NVIKLTVEDG--GDLSENVSDTEFLGYDTL-----------------------SARAVID 393

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR------LQITDVQ 547
           +++  G+ V +   G +VE++ ++TPFYAE+GGQ+GD G              ++I DVQ
Sbjct: 394 SLLVNGKPVIQVPEGSEVEILLNKTPFYAESGGQIGDHGFLYVTEGESKPRAIVEIKDVQ 453

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K    +FVH   +  G+L     +   +D + R++  ++H+ATHLL  AL  ++G   SQ
Sbjct: 454 KSLGNVFVHKGTIREGLLEVGREVEAAVDPKLRQRAKVHHTATHLLQSALKKVIGQETSQ 513

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS +  D LRFD    +P+   EL+ IE  +N  I     + T++M+  DA  +GA A+
Sbjct: 514 AGSLVAFDRLRFDFNFHRPLLDTELEEIEALINGWIGDATLLQTKVMSITDAKNAGAIAM 573

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G KY ++VRVV V        S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ 
Sbjct: 574 FGEKYGEQVRVVEVPG-----VSMELCGGTHVSNTSEIRAFKIISEQGIASGIRRIEAVA 628

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---- 783
           G+    ++  +D ++  L S LKV    V  RVE + EE R  +   +  + +  V    
Sbjct: 629 GEAFIEYINARDSQITRLCSTLKVKAEEVTTRVENLLEELRIARNEVSAMRSKAAVYKAS 688

Query: 784 ----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI-SKEKKASV 838
               + +S      +  +   + ++D+  LKS  + L   +     +++G    E K S+
Sbjct: 689 TMASKAVSVGTSKSIRVLVESMDDIDADSLKSAAEYLIDALGDPAAVVLGSYPDEGKVSL 748

Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +   T  +++    A       AK+ GGGGG GRP+ AQ+GG        A+    + L
Sbjct: 749 VAAFTPGVVNLGVQAGKFIGPIAKLCGGGGG-GRPNFAQAGGRKPGNLPSALEKAHADL 806


>gi|229545937|ref|ZP_04434662.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|229309005|gb|EEN74992.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322]
          Length = 741

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/778 (37%), Positives = 431/778 (55%), Gaps = 61/778 (7%)

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-------PGGLPGSSE 192
           W+   GLS D II     DNFW +   GP GP +EIF+D+GE         P   PG   
Sbjct: 1   WRDEVGLSEDHII--DVEDNFWDIGA-GPSGPDTEIFYDRGEEFLDIPEDDPENYPGG-- 55

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           E ERY+EIWNLVF +F    +     LP  +IDTGMGLER+ +++Q+   N++ DLF  +
Sbjct: 56  ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQDAPTNFETDLFMPI 115

Query: 253 IQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           I A E + T +KY       V+ +VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+
Sbjct: 116 IHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAV 175

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            + + LG  E  +  L+P +   M S YPE++Q K  IE+ +R+E+ERF +T++ GL +L
Sbjct: 176 MHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEEERFHETINEGLSML 235

Query: 370 DGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           + V+  +   K + L+G + FKLYDT G P+++ +++    GL  +D   F   +E QR 
Sbjct: 236 NEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLK-VDHAGFETEMEAQRE 294

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487
           RAR+      S   +     L +    ++F+GY  L                        
Sbjct: 295 RARSARSKETSMGVQSAL--LTDIKVESKFVGYTELTHD--------------------- 331

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITD 545
             S +  I+Q   +V EA +G   E++F +TPFYAE GGQ+ D G        +   + D
Sbjct: 332 --SELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQIADRGYVKNTAGDVVANVVD 388

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V+K   G F+H   V    L       L +D + R ++  NH+ATHLLH AL  +LG H 
Sbjct: 389 VKKAPNGQFLHKVEVL-APLAEGQIYQLQVDERMRTRILKNHTATHLLHRALKDVLGEHA 447

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +Q GS + P  LRFD TH   +TS EL  +E  VN+ I + +PVVT   + + A   GA 
Sbjct: 448 NQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMGAM 507

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           AL G KY   VRVV++     G +S  LCGGTHV++T +I +  IVSES I AG+RRIEA
Sbjct: 508 ALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRIEA 562

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKR--KLQLN 782
           +T + A   L  ++ +LK +A+ +K  Q   VV + E++ ++ R LQ  + +   KL   
Sbjct: 563 VTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQLQQQLRDLQKENEQLAGKLANQ 622

Query: 783 VEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                   + DVN + +I ++V   D  +L+ + D  ++K  S +++L   ++++K S+L
Sbjct: 623 QAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKELSDVLVLA-TAQDEKVSLL 681

Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +T+D+  +   A DL +  A  +GGGGG GRP MAQ+GG N      A+A V ++L
Sbjct: 682 AAMTKDMNGKGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKNPAGIADALAEVENWL 738


>gi|114607605|ref|XP_518510.2| PREDICTED: alanyl-tRNA synthetase like [Pan troglodytes]
          Length = 985

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/956 (29%), Positives = 443/956 (46%), Gaps = 92/956 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+I+ +D D         E   +W  + G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    +            + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDLAGGVGA---------PQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DGI P   G   VLRRI+RRA+ +   +L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +L  +G+  +D     + A EE + RAR        G    +W  +    G  Q  G   
Sbjct: 456 MLEEKGV-QLDSAGLERLAQEEAQHRARQAEPVQKQG----LWLDVHA-LGELQRQGVPP 509

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
              S    +    L      +     + +++   + G  V     GQ+  ++ D+T FYA
Sbjct: 510 TDDS---PKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYA 566

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G  +  G    +  V + +  G F+ H  V    LR    + L +D   R 
Sbjct: 567 EQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVDEAWRL 626

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL+ AL   LG    Q GS + P+ LR DVT   P+T  +L+++E+ V +
Sbjct: 627 GCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVENTVQE 686

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGGVHSS 691
            + Q+  V    +             L   Y D V            +    +     S 
Sbjct: 687 AVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSV 746

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASF 748
            LC GTH+  TG +  L I+ +  +  G  R+ AITG   Q+AR       +++K+    
Sbjct: 747 ELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQEVKAATER 806

Query: 749 LKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNV 783
           L     +V   +                        E+    + LQ     A RKLQ+  
Sbjct: 807 LSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRANTAIRKLQMGQ 866

Query: 784 EDLSCHKIADVNFMS-HIISEVDSKELKSVMD---ALQKKIQSGIIMLVGISKEKKASVL 839
                 ++ + +     I+  V ++ L  ++     L ++  S  ++L+      K    
Sbjct: 867 AAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQPMGKVLCA 926

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 927 CQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSIAQTY 980


>gi|219558559|ref|ZP_03537635.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|289570724|ref|ZP_06450951.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|289544478|gb|EFD48126.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17]
          Length = 797

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/812 (33%), Positives = 418/812 (51%), Gaps = 64/812 (7%)

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           + LD  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++
Sbjct: 10  YGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYY 69

Query: 178 DQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           D+G    P G P  SE+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+
Sbjct: 70  DRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGV 127

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIA 287
           ER+A VLQ+  N Y+ DL + +I    +V    Y+     + V +R+I DH R+++ LI 
Sbjct: 128 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 187

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I
Sbjct: 188 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 247

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405
                +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++ 
Sbjct: 248 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 307

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
              GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR 
Sbjct: 308 AETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS 366

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQ 517
                                   + +  I   G+ V          A  GQ+VE+V D+
Sbjct: 367 -----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDR 403

Query: 518 TPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++ 
Sbjct: 404 TPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIA 463

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +  
Sbjct: 464 AVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRT 523

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  L
Sbjct: 524 QVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLEL 579

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV  
Sbjct: 580 CGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPS 639

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
             V  RV  + E  R  +    + ++               +I +V  ++  +S  + + 
Sbjct: 640 EEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAA 699

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAKVLG 864
           +L+S++  ++ K+ S   ++  I++ +  +V   V  +         A DL +  A  + 
Sbjct: 700 DLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVE 759

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG+  +AQ  G N    D A+  V S +
Sbjct: 760 -GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 790


>gi|156089757|ref|XP_001612285.1| alanyl-tRNA synthetase family protein [Babesia bovis]
 gi|154799539|gb|EDO08717.1| alanyl-tRNA synthetase family protein [Babesia bovis]
          Length = 978

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/920 (31%), Positives = 443/920 (48%), Gaps = 76/920 (8%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61
           +R+ F+  F+K+GH    SS ++P NDPTL+F N+GM  FK+I TG+          + V
Sbjct: 25  VRSEFIRHFEKHGHVFWKSSPVLPHNDPTLLFANAGMNQFKDIITGKADQSTEYGRLRRV 84

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK+ AI +AW+L+T+ + LD
Sbjct: 85  CNSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDMAWELMTEVYKLD 144

Query: 122 QRRLYITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           + RLY+T +           DEEA  LW  +  L A +I+     DNFW MA+TGPCGPC
Sbjct: 145 KSRLYVTYFGGDPKLPNCGPDEEARDLW--LRHLPASRILPFGMKDNFWEMADTGPCGPC 202

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           SEI +D            + +    +E+WNLVFMQ+ +++     +LP+  +DTGMGLER
Sbjct: 203 SEIHYDHIGG-RDAASLVNADDPMVVELWNLVFMQYNRKSDGSVELLPRPCVDTGMGLER 261

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNN---IVNHRVIVDHLRSSSFLIA 287
           +  VL+   +NYD DLF  +     ++      Y G++    V +RV+ DH R  +  IA
Sbjct: 262 VCAVLKSSNSNYDGDLFTDIFAYVNKLMPHLPPYGGSDSMIDVAYRVVADHARCLTVAIA 321

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG+ P+N+GRGYVLRRI+RRA+ Y +  LG + P M  L+  +   +G A+PE+      
Sbjct: 322 DGVEPSNDGRGYVLRRILRRAVRYGKEHLGSSGPFMSKLVDCVVASLGVAFPEIQNNNDK 381

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLPLDI 400
           I  T+ +E+  F +TLD+G      +++ L       KD +++G  AF LY + G P D+
Sbjct: 382 IAATIHNEEVLFLETLDKGCDRFRKMVAKLQAGTENSKDLVVSGADAFLLYSSFGFPPDL 441

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
            Q +    GL  +DI  FN+  +  +  +    L       E+    L     A      
Sbjct: 442 TQLMAREMGL-DVDIDGFNEHFKRHQQLSEKK-LCKSDDPVEQGMADLLSTLSADVLATI 499

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
               G +   +  K        D+       V A      + +    G    +V D+TPF
Sbjct: 500 SNSIGGRVTDDSLKYHGFAEAYDVDLEYDVEVLAQWSLSGLNKPLTEGDVFVLVLDRTPF 559

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE+GGQ+ D G          +  V K   G+  H  +   G       +   +DY+ R
Sbjct: 560 YAESGGQIWDVGTL----GPFNVMKVLK-MAGMVFHFCVYHEGNAMPGARVKAKVDYKRR 614

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            +++ NH+ THLL+  L  +      Q GS +  + L+FD+  +K +    L+ IED + 
Sbjct: 615 VKVACNHTGTHLLNFVLREVYDEQSYQKGSQLDEEKLKFDIAANKQMPDETLQRIEDRMQ 674

Query: 641 DIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCG 695
           +II  N  +  R ++ +DA+   G  A     Y + VRVV++  +    DG  +S  +CG
Sbjct: 675 EIIDANWKIEVREIDFKDAVEIPGIRANFTDVYPEVVRVVAMTKDGQPIDGKAYSVEICG 734

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ------RARSHLMGQDEKLKSLASFL 749
           GTHV  TG +    IV E S+  G+RR+   T +         +    Q E L+  +   
Sbjct: 735 GTHVPFTGVLKSAIIVGEESVSKGVRRLTLATNEKSEDSKAILASYWQQLETLE--SELY 792

Query: 750 KVSQG-NVVGRVEEIWEEYRKL-----QLIHAK-------RKLQLNVEDLSCHKIADVNF 796
           K S G +     ++  +  ++L     Q+   K       R L+   + L   ++     
Sbjct: 793 KFSDGMDTATMAQQANDNMKRLTALRFQMQSEKLLPLLGRRDLKNKFDTLINQQVEAGKV 852

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL- 855
               +  +        ++  +        + +G     K     +   DL     +V+L 
Sbjct: 853 HQKRLGVIAKNMSTEYVNKFKAGDFGSAKVTLGTVDMIK-----MDANDLEGDVKSVNLF 907

Query: 856 ARLSAKVLGGGGGGGRPHMA 875
           A+  +K L        P MA
Sbjct: 908 AQTLSKAL--------PKMA 919


>gi|73973034|ref|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase like [Canis
           familiaris]
          Length = 985

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/963 (28%), Positives = 441/963 (45%), Gaps = 92/963 (9%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      
Sbjct: 39  ATAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEMAG 98

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 99  FRRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 158

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +        D D E+  +W  + G+ A  ++     +NFW M +TGP
Sbjct: 159 VYGIPKDRLWVSYFGGDPKAGLDPDLESRDIWLNL-GVHASHVLSFGPEENFWEMGDTGP 217

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D    +            + +E+WNLVF+Q  ++       LP+  +DTGM
Sbjct: 218 CGPCTEIHYDLAGRVGA---------PQLVELWNLVFIQHNRETDGSLQPLPQRHVDTGM 268

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHL 279
           GLER+  VLQ   + YD DLF  L++A  Q  G             G   + +RV+ DH+
Sbjct: 269 GLERLVAVLQGTPSTYDTDLFSPLLKAIHQGCGAPPYLGQVGAADKGRTDMAYRVVADHI 328

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLRRI+RRA+ ++  +L      +  L+P +   +G  YP
Sbjct: 329 RTLSVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLQAPPGFLGSLVPVVVEILGDTYP 388

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGL 396
           EL +    I   +  E+  F  +L RG  ++D  L  LG  E+   +VA+ L      GL
Sbjct: 389 ELQKHSAQIASLVSEEEAAFLASLQRGRRIIDQTLRCLGPSELFPAEVAWSLSLSGNLGL 448

Query: 397 PLDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
           PLD+++ +L  +G+  +D     + A EE + R+R        G    +        G  
Sbjct: 449 PLDLVELMLEEKGV-QLDSAGLARLAQEEAKLRSRQAEPVQRQGLQLNV-----HALGEL 502

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           Q  G      S    +    L      +     + +++  ++ G  V     GQ   ++ 
Sbjct: 503 QRRGVPPTDDS---PKYNYSLRPSGGYEFNPCEAQVLQLYLEDGTAVASVGKGQHCGLLL 559

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  D G  +  G    +  V + +  G F+ H  V    L+    + L 
Sbjct: 560 DKTNFYAEQGGQASDRGYLVRVGQEDVLFPVARAQICGGFILHEAVAPEGLKVGDQVQLH 619

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   R      H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+T  +L++
Sbjct: 620 VDEAWRLGCMEKHTATHLLNWALRQALGPGTEQRGSHLNPERLRFDVATQAPLTPEQLQA 679

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYE 684
           +E  V + + Q+  V    +             L   Y D V          R +    +
Sbjct: 680 VEGTVQEAVGQDEAVYMEEVALAHTAHVPGLRSLDEVYPDPVRVVSVGVPVARALDPASQ 739

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEK 741
                S  LC GTH+  TG +  L I+ E  +  G  R+ A+TG   Q+AR       ++
Sbjct: 740 AALQTSVELCCGTHLLRTGAVGDLVIIGERQLTKGTVRLLAVTGEQAQQAREVGQSLAQE 799

Query: 742 LKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--AK 776
           +++    L     +VV   R+                      E+    + LQ     A 
Sbjct: 800 VEAATERLSRGSQDVVEAHRLSKDMGRLIDAVDTAVMPQWQRRELQAALKVLQRRANTAL 859

Query: 777 RKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           RKL+L        ++    ++   +   ++      L  V+  L ++     ++L+    
Sbjct: 860 RKLELRQAAQKTQELLQRHSEGPLIVDTVAAESLSVLVKVVRQLCERAPCTSVLLLSPQP 919

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +        V +  +  F A   A      + GG   G   +AQ  G   +  + A++  
Sbjct: 920 QGHVLCACQVAQSAMPAFTAEAWALAVCSHM-GGKAWGSQVVAQGTGTTAD-LEAALSTA 977

Query: 893 ASF 895
            ++
Sbjct: 978 RTY 980


>gi|66475244|ref|XP_627438.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum
           Iowa II]
 gi|46229265|gb|EAK90114.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum
           Iowa II]
          Length = 1003

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/970 (31%), Positives = 477/970 (49%), Gaps = 119/970 (12%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           +     +R  F+++F+   H    SS +IP NDPT++F N+GM  FK+IF G  +P  + 
Sbjct: 20  IWTGDEVRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSEL 79

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A+ LLT
Sbjct: 80  SKLVRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLT 139

Query: 116 KEFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           + + + + RLY T +           DEEA ++W K   L  D+I+   + +NFW MA+T
Sbjct: 140 QVYGIPKDRLYATYFGGDPKLPSCPPDEEAKRIWLKY--LPEDRILSCGSKENFWEMADT 197

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI +D+       +   +++    IEIWNLVFMQ+ ++       LPK  +DT
Sbjct: 198 GPCGPCSEIHYDRIGG-RDAISLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDT 256

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---TGM---KYEGNN---------IVN 271
           GMGLER+ ++LQ KT+NYDIDLFK +     QV   +G+   +Y G            ++
Sbjct: 257 GMGLERLVSILQNKTSNYDIDLFKPIFDQIHQVISSSGVQIPRYSGKVGDIDDPEMIDMS 316

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT----EPLMMHLLP 327
           +RVI DH+R+ +  IADG +P+NEGRGYVLRRI+RRA+ Y           EP    L+ 
Sbjct: 317 YRVISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVD 376

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG---------K 378
           ++   MG+ Y E+ +   +I+E +  E+++F KTL +G    + V++ L           
Sbjct: 377 SVSNIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQN 436

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
            ++     AF+LY T+G P+D+ + +   +G    D   F   +E     +         
Sbjct: 437 KKLFPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMENHHLAS--------E 487

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
           G   K +  L  K      I  +LL      + D +   Q           S + AI   
Sbjct: 488 GKNNKSFDDLILKPD----IQNNLLLEFGLKETDDQYKYQSQ--TQIKDFYSNLIAIFDG 541

Query: 499 GEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCA-----IGDGIRLQITDVQKKAEG 552
            +++      G+ + ++FD+T FY+E+GGQ+ DTG         D + +      KK   
Sbjct: 542 NQLLNATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDEVSIFQVIDCKKFGN 601

Query: 553 IFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +H  I+ +G   +  E+  ++++DY  R  +  NH+ TH+L+ AL  ILGS   Q GS
Sbjct: 602 YVLHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRGS 661

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLG 669
            + P+ LRFD +  KP+T  +++ IE  +N II +   V  + +    A       A+ G
Sbjct: 662 VVDPNKLRFDFSSQKPLTLDQIEEIEKMINQIIQEKQTVYCQTVELSIAKQIPNIRAIFG 721

Query: 670 TKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
             Y D VRV+SV            +  D    S   CGGTHV +T EI+   I+SE  I 
Sbjct: 722 ETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGIA 781

Query: 718 AGIRRIEAIT----------GQRARSHLMGQDEK----LKSLASFLKVSQGNVV------ 757
            GIRRI A+T           +R +      +E     L++L +  K             
Sbjct: 782 KGIRRIVAVTDNQSEIAIENAKRLKQEFKKLEELNGKELETLLNSFKSKLDETKLLPLLY 841

Query: 758 -GRVEEIWEEY----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-- 804
             ++ +I EE           ++ + ++  ++L   +      +++  N    +I  +  
Sbjct: 842 RRQLSQIIEENYKRVIADAKKKQKERLNMAKELATKIGQEYSQQLSSNNEFPALILNIKQ 901

Query: 805 ---DSKELKSVMDALQKKIQSGIIMLV--GISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
              DSK +  +   + KK     IML   G   +   SV+ ++ +   D+ ++ +  + +
Sbjct: 902 IQGDSKSMDVIGQDISKKYPEAPIMLFTSGEFNDNGVSVISIMPKSKSDKLSSSNWLKST 961

Query: 860 AKVLGGGGGG 869
            ++  G  GG
Sbjct: 962 IELCNGKCGG 971


>gi|67594831|ref|XP_665905.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis TU502]
 gi|54656773|gb|EAL35675.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis]
          Length = 989

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/971 (31%), Positives = 476/971 (49%), Gaps = 123/971 (12%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ- 59
           +     +R  F+++F+   H    SS +IP NDPT++F N+GM  FK+IF G  +P  + 
Sbjct: 8   IWTGDEVRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSEL 67

Query: 60  ----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
                V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE AI+ A+ LLT
Sbjct: 68  SKLVRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLT 127

Query: 116 KEFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           + + + + RLY T +           DEEA K+W K   L  D+I+   + +NFW MA+T
Sbjct: 128 QVYGIPKDRLYATYFGGDPKLPSCPPDEEAKKIWLKY--LPEDRILSCGSKENFWEMADT 185

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPCSEI +D+           +++    IEIWNLVFMQ+ ++       LPK  +DT
Sbjct: 186 GPCGPCSEIHYDRIGG-RDASSLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDT 244

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQV---TGM---KYEGNN---------IVN 271
           GMGLER+ ++LQ KT+NYDIDLFK +     QV   +G+   +Y G            ++
Sbjct: 245 GMGLERLVSILQNKTSNYDIDLFKPIFDQIYQVISSSGVQIPRYSGKVGDIDDPEMIDMS 304

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT----EPLMMHLLP 327
           +RVI DH+R+ +  IADG +P+NEGRGYVLRRI+RRA+ Y           EP    L+ 
Sbjct: 305 YRVISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVD 364

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG---------K 378
           ++   MG+ Y E+ +   +I+E +  E+++F KTL +G    + V++ L           
Sbjct: 365 SVSNIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQN 424

Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438
            ++     AF+LY T+G P+D+ + +   +G    D   F   +E     +         
Sbjct: 425 KKLFPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMENHHLAS--------E 475

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
           G   K +  L  K      I  +L+      + D +   Q    D      S + AI   
Sbjct: 476 GKNNKSFDDLILKPD----IQNNLIVEFGLKETDDQYKYQTQIKDFY----SNLIAIFDG 527

Query: 499 GEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAE 551
            ++++     G+ + ++FD+T FY+E+GGQ+ DTG          +  + Q+ D  KK  
Sbjct: 528 NQLIDATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDETSKFQVIDC-KKFG 586

Query: 552 GIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              +H  I+ +G   +  E+  ++++DY  R  +  NH+ TH+L+ AL  ILGS   Q G
Sbjct: 587 NYVLHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRG 646

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALL 668
           S + P+ LRFD +  KP+T  +++ IE  V+ II +   V  + +    A       A+ 
Sbjct: 647 SVVDPNRLRFDFSSQKPLTLDQIEEIEKMVSQIIQEKQTVYCQTVELSIAKQIPNIRAIF 706

Query: 669 GTKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           G  Y D VRV+SV            +  D    S   CGGTHV +T EI+   I+SE  I
Sbjct: 707 GETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGI 766

Query: 717 RAGIRRIEAIT----------GQRARSHLMGQDEK----LKSLASFLKVSQGN------- 755
             GIRRI A+T           +R +      +E     L++L +  K            
Sbjct: 767 AKGIRRIVAVTDNQSEIAIENAKRLKQEFKKLEELNGKELETLLNSFKSKLDETKLLPLL 826

Query: 756 --------VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV- 804
                   +    + +  + +K Q       ++L   +      +++  N    +I  + 
Sbjct: 827 YRRQLSQIIEEHYKRVIADAKKKQKERLNMAKELATKIGQEYSQQLSSNNEFPALILNIK 886

Query: 805 ----DSKELKSVMDALQKKIQSGIIMLV--GISKEKKASVLIVVTEDLLDRFNAVDLARL 858
               DSK +  +   + KK     IML   G   +   SV+ ++ +   D+ ++ +  + 
Sbjct: 887 QIQGDSKSMDVIGQDISKKYPEAPIMLFTSGEFNDNGVSVISIMPKSKSDKLSSSNWLKS 946

Query: 859 SAKVLGGGGGG 869
           + ++  G  GG
Sbjct: 947 TIELCNGKCGG 957


>gi|109071333|ref|XP_001099647.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Macaca
           mulatta]
          Length = 985

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/955 (29%), Positives = 439/955 (45%), Gaps = 90/955 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 46  FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + +   
Sbjct: 106 QKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPTE 165

Query: 124 RLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +D D         E   +W  + G+ A +++     +NFW M  TGPCGPC+EI
Sbjct: 166 RLWVSYFDGDPKAGLEPDLETRDIWLSL-GVPATRVLSFGPQENFWEMGNTGPCGPCTEI 224

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D    +            + +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 225 HYDLAGGVGA---------PQLVELWNLVFMQHNREADGSLQPLPQWHVDTGMGLERLVA 275

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLI 286
           VLQ K + YD DLF  L+ A +Q           G+  EG     +RV+ DH+R+ S  I
Sbjct: 276 VLQGKHSTYDTDLFSPLLHAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335

Query: 287 ADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P   G   VLRRI+RRA+ +   +L      +  L+P +   +G AYPEL +   
Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403
            I   +  ++  F  +L+RG  ++D  L  LG  ++   +VA+ L      GLPLD+++ 
Sbjct: 396 QISNLVLEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLSGDLGLPLDMVEL 455

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +L  +G+  +D     +  +E    A+  +        + +W  +    G  Q  G    
Sbjct: 456 MLEEKGV-QLDSTGLERLAQE---AAQHQARQAEPVQKQGLWLDVHA-LGELQHQGVPPT 510

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             S    +    L      +     + +++   + G  V     GQ+  ++ D+T FYAE
Sbjct: 511 DSS---PKYNYSLRPNGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTNFYAE 567

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            GGQ  D G  +  G    +  V + +  G F+ H  V    L+    + L +D   R  
Sbjct: 568 QGGQASDRGYLVRVGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKAWRLA 627

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H+ATHLL+ AL   LG    Q GS + P+ LR DVT    +T   L+++E+ V + 
Sbjct: 628 CMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTALTPERLRAVENTVQEA 687

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGGVHSSA 692
           + Q+ PV    +             L   Y D V            +    +     S  
Sbjct: 688 VQQDKPVYMEEVPLALTAQVPGLRCLDEVYPDPVRVVSVGVPVAHALDPASQAALQTSVE 747

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASFL 749
           LC GTH+  TG +  L I+ +  +  G  R+ AITG   Q+AR       +++K+    L
Sbjct: 748 LCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQNLAQEVKAATERL 807

Query: 750 KVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKRKLQLNVE 784
                +V   +                        E+    + LQ     A RKLQ+   
Sbjct: 808 SQGSRDVAEALRLSKDIGRLIEAVETSVMPQWQRRELLATLKMLQRRANTAIRKLQMGQA 867

Query: 785 DLSCHKIADVNFMS-HIISEVDSKELKSVMD---ALQKKIQSGIIMLVGISKEKKASVLI 840
                ++ + +     I+  V ++ L  ++     L ++  S  ++L+      K     
Sbjct: 868 AKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSPQSMGKVLCAC 927

Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            V +  +  F A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 928 QVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTTD-LEAALSTARAY 980


>gi|194039401|ref|XP_001929628.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Sus
           scrofa]
          Length = 985

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/953 (29%), Positives = 442/953 (46%), Gaps = 91/953 (9%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
           +  +++R  FL FF+ ++GH L+PS+S+ P  DPTL+F N+GM  FK IF G   P    
Sbjct: 37  TQAAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPTLLFVNAGMNQFKPIFLGTVDPRSEM 96

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114
             ++ V   QKCVRAGG+HNDL++VG+   HHTFFEMLGN++FGG YFKE A  +AW+LL
Sbjct: 97  AGFRRVANSQKCVRAGGRHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 156

Query: 115 TKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T+ + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +T
Sbjct: 157 TQVYGIPEDRLWVSYFGGDPKAGLGADLESRDIWLNL-GVPASRVLSFGPQENFWEMGDT 215

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPC+EI +D    +            + +E+WNLVFMQ  ++       LP+  +DT
Sbjct: 216 GPCGPCTEIHYDLAGGVGA---------PQLVELWNLVFMQHNREADGSLQPLPQRHVDT 266

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVD 277
           GMGLER+  VLQ K + YD DLF  L+ A  Q  G            EG+    +RV+ D
Sbjct: 267 GMGLERLVAVLQGKHSTYDTDLFSPLLNAIHQGCGAPPYSGRVGAADEGHIDTAYRVVAD 326

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ S  IADG+ P   G   ++RRI+RRA+ ++  +L      +  L+P +   +G A
Sbjct: 327 HIRTLSICIADGVSPGMSGAPLIVRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGGA 386

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTH 394
           YPEL +    I   +  ++  F  +L RG  +++  L  LG  ++   +VA+ L      
Sbjct: 387 YPELHKNSAQIVSLVSEDEAAFLASLQRGRRIIERTLKRLGPSDVFPAEVAWSLSLSGNL 446

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           GLPLD+++ +L  +G+  +D     + A EE + RA+        G        L+    
Sbjct: 447 GLPLDLVELMLEEKGV-QLDSAGLARLAQEEAQHRAQQAEPVQEQG--------LRLDVH 497

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           A   +    +  +    +    L      + +   + +++   + G  V     GQ+  +
Sbjct: 498 ALGELQRRGVPPTDDSPKYSYSLRPSGGYEFSTCEARVLQLYAEDGRAVATTGEGQRYGL 557

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  D G  +    +  +  V Q +  G F+ H +V    L+    + 
Sbjct: 558 LLDRTNFYAEQGGQASDRGYLVRVEQQDVLFPVAQAQVCGGFILHEVVAPECLKVGDRVQ 617

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D   R      H+A HLL+ AL   LG    Q GS ++P+ LRFDV    P+T  +L
Sbjct: 618 LHVDEAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHLSPERLRFDVATQAPLTPKQL 677

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVE 682
           +++ED V + + ++  V    +             L   Y D V            +   
Sbjct: 678 QAVEDTVQEAVGRDEAVYMEEVALARTTHVPGLRSLDEVYPDPVRVVSVGVPVAHALEPA 737

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQD 739
            +     S  LC GTH+  TG I  L IV E  +  G  R+ AITG+   +AR       
Sbjct: 738 SQAALQTSVELCCGTHLLRTGAIGDLVIVGERQLAKGTTRLLAITGEQARQAREVGQSLA 797

Query: 740 EKLKSLASFLKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH-- 774
           +++++ A  L     +VV                           E+    + LQ     
Sbjct: 798 QEVEAAAERLSRGSRDVVEAQRLSKDMGRLTDAVDTSVMPQWQRRELQATLKALQRRANT 857

Query: 775 AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A RKL++    L   ++    ++   +   +S      L  V+  L K+  S  ++L+  
Sbjct: 858 AIRKLEMGQAVLKTQELLQRHSEGPLIVDTVSAESLSMLVKVVRQLCKQAPSTSVLLLSP 917

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
               +      V +     F A   A      +GG   G R  +AQ  G   +
Sbjct: 918 QPLGQVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 969


>gi|255727014|ref|XP_002548433.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240134357|gb|EER33912.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 700

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 241/691 (34%), Positives = 358/691 (51%), Gaps = 49/691 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             + +R+TFL++F++N H  +PSSS++P NDPTL+F N+GM  +K IF G   P      
Sbjct: 26  TAAKVRSTFLDYFKQNKHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFAT 85

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLTK 
Sbjct: 86  LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDFSWELLTKV 145

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + L + RLY+T +  DE        EA + W K+ G+  D I+  +  DNFW M + GPC
Sbjct: 146 YGLPEDRLYVTYFGGDEKQGLEPDLEAKEFWLKV-GVPEDHILPGSVKDNFWEMGDQGPC 204

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI FD+           + +    IE+WN+VF+QF ++       LP   IDTGMG
Sbjct: 205 GPCSEIHFDRIGG-RNASDLVNMDDPNVIEVWNVVFIQFNREADGNLRSLPNKHIDTGMG 263

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ ++LQ+K++NYD D+F  +     ++TG++                 +RVI DH+R
Sbjct: 264 FERLVSILQDKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIADHVR 323

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +P
Sbjct: 324 TLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEIFP 383

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGL 396
           E+      ++E L  E+  F KTLDRG  L +   +++    ++ L+G   ++LYDT+G 
Sbjct: 384 EIASGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYGF 443

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +    GL  ID   F +A EE R  ++ +    G                   
Sbjct: 444 PVDLTRLMAEEAGLK-IDEPGFERAKEESREASKGNGTKDGK-----------------T 485

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVF 515
            +  D+   S+  K D            T  V + V  I    + V+       +  ++ 
Sbjct: 486 LVKLDVHALSELDKNDAIPKTNDEFKYGTENVKATVVGIYDGSKFVDSIEDSSVQCGILL 545

Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+TPFYAE GGQ  DTG  + DG     +++VQ    G  +H   +  G L     ++ T
Sbjct: 546 DKTPFYAEQGGQEYDTGKIVIDGKSEFNVSNVQ-VYAGYVLHTGNILEGKLSVGDEIIAT 604

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +H + ++  EL+ 
Sbjct: 605 YDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQALSPKELEK 664

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +E   N  I  N  V  + +    A      
Sbjct: 665 VEAISNKYIKNNDKVFYKDVALAQAKEITGF 695


>gi|152002558|dbj|BAF73582.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 864

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/935 (30%), Positives = 444/935 (47%), Gaps = 112/935 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G +KP ++ +
Sbjct: 1   MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T VQKC+R     ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F 
Sbjct: 61  TNVQKCIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFA 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT + +D++ ++ W  + G+  + +I +   +NFW +   GP GPC+EIFFD+
Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVEKNHLIPL--KNNFWQIG-PGPSGPCTEIFFDR 172

Query: 180 GECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G+        L     E +R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER+
Sbjct: 173 GKTFDSRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ    N++ DLF  LI+A E++T +KY G    N ++I DHL++  F I DG +  
Sbjct: 233 ACILQNTKTNFETDLFFPLIKALEKMTQIKYTGQE--NFKIIADHLKTLVFAINDGAVLT 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  
Sbjct: 291 NEKRGYVLKKLLRRAANEGKKLGLDKPFLHQLVPPTVAMMKDFYKELCTNQEMIAKVLLQ 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++  F +TL          L HL ++  L+G   FKLYDT+G+P D++ D    + +   
Sbjct: 351 QENIFEQTLKTAEKTF---LQHLTQN-TLSGKNFFKLYDTYGIPEDLILDYAKKKNITT- 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + L + ++ ++ +         ++   +  +    ++FIGY             
Sbjct: 406 DYQKFQELLHDHQNLSKQNQTSQTHMNKQE--EAFLQFLTPSEFIGY------------- 450

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G             +V ++TPFYA  GGQ+ D G 
Sbjct: 451 ----------TNFTCKTKVIKVFDKG-------------IVLEKTPFYANMGGQIEDEGW 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++T + K   G  +H     +G       +   ID   R Q+S +H+ATHLL
Sbjct: 488 IDNT----KVTKITKLPNGQILHEV---QGKFCEGQEVYACIDKTKRNQISYHHTATHLL 540

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
              L   LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    
Sbjct: 541 EAVLQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQ 600

Query: 654 MNREDAIASGAAALL---GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++  DA    A  L      KY D+VR+VS+        S  LCGGTH ++T ++    I
Sbjct: 601 LSISDAQKKYATLLEKNQKAKYKDKVRIVSI-----DTFSVDLCGGTHATNTKDLEHFTI 655

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQ------------- 753
           +S  SI +GI RIEA+     +  L  +       L  L    K  Q             
Sbjct: 656 LSCESISSGIYRIEAVCNNNCQESLNAKLFPYQNDLHQLTQKAKSLQTQNLIFDVKSFPP 715

Query: 754 -----GNVVGRVEEIWEEYRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIIS 802
                 +++   + I  + + L L   K      +K+     +    +I     M  I  
Sbjct: 716 ITQSYQDILNYQKHIKAQQQALVLFEKKVLEYHQKKMVQAESNFLPPQITK-KMMLTIEE 774

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           E   + LK  M+ +  K    ++ L  +  EK   +            +A +L + +  +
Sbjct: 775 EKHLEVLKFFMNHIFDKYHLEVLFLSYVQPEKIVFLC------KSKTLHAGNLIKEAVSL 828

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  G GGG   +AQ G       +Q +  V + L+
Sbjct: 829 VC-GSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862


>gi|84998104|ref|XP_953773.1| alanyl-tRNA synthetase [Theileria annulata]
 gi|65304770|emb|CAI73095.1| alanyl-tRNA synthetase, putative [Theileria annulata]
          Length = 1024

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/898 (31%), Positives = 462/898 (51%), Gaps = 69/898 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R  F+++F    H   PSSS++P NDPTL+F N+GM  FK+I  G+     E    + V
Sbjct: 82  VRKQFIDYFVSKNHVHWPSSSVLPNNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 141

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   H T+FEMLGN+SFG YFKE AI  AWDLLT  + LD
Sbjct: 142 CNSQKCIRAGGKHNDLDDVGQDCYHQTYFEMLGNWSFGAYFKEEAISYAWDLLTNVYKLD 201

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY+T +  D+      E  ++W K   + A +I+   + DNFW MA+TGPCGPC+EI
Sbjct: 202 PNRLYVTYFGGDKSCEVDNETREIWLKF--MPASRILPFGSKDNFWEMADTGPCGPCTEI 259

Query: 176 FFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
            +D      GG   S   + +    +EIWN+VFMQ+ +        LPK  +DTGMGLER
Sbjct: 260 HYDH----IGGRDASTLVNADDPNVVEIWNIVFMQYNRGENGVLERLPKGCVDTGMGLER 315

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGNN---IVNHRVIVDHLRSSSFLIA 287
           + +VL    +NY+ DL   +IQ   ++      Y+G N    V +RV+ DH+R  S  I+
Sbjct: 316 LCSVLNNTNSNYNTDLLNDIIQYIRELLPGFESYKGGNTPLDVAYRVVSDHVRCLSVAIS 375

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           D + P+NEGRGYVLRRI+RRA+ Y R      EP +  L+P++   +G+AYP L+  +  
Sbjct: 376 DKVYPSNEGRGYVLRRILRRAVRYCRDYFNTKEPFLYKLVPSVTKLLGNAYPNLLTEQAN 435

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           IE  +  E++ F +TLD+G+     ++S  G ++++NG  AF LY ++G PLD+   +  
Sbjct: 436 IESIVLDEEKLFLQTLDKGVEKFKKMVSKSG-NKVINGPDAFLLYQSYGFPLDLTMLMAR 494

Query: 407 ARGLAGIDIISFNQALEEQRSRARAH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
             G+  +D+  +   L+  + ++ +     L       +K+  SL      T      +L
Sbjct: 495 ELGIT-VDVDGYYSELKLHQQKSESRVYTDLNSLESRCDKLLKSLSADRINT------IL 547

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVE-EAVSGQKVEVVFDQTPF 520
           +    +  D K+       D    V  + +V  +     + E +      V +V D+TPF
Sbjct: 548 KMCNNVYTDDKLKYDWDSSDPVAKVYKAKLVSTVTLDSVMSELQCDDDDLVCLVMDRTPF 607

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GGQ+ DTG        L++  V K +  +F      + G+LR      L +DY+ R
Sbjct: 608 YAEGGGQIYDTGYIND----LEVLRVYKMSGLVFHFCLSKKSGVLRCGDEFELKVDYERR 663

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            +++ NH++TH+L+  L  +L     Q GS +  + L+FD  +++ +    ++ IED + 
Sbjct: 664 VRVASNHTSTHILNFVLRDMLDESSYQRGSQLDEEKLKFDYCYNQQLPEDLIRRIEDRMM 723

Query: 641 DIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCG 695
           D +    P+ TR +  ++A+   G  A    KY + VRVV+V    E   G   S+ +CG
Sbjct: 724 DFVRSEAPLRTREIEYKNALEIPGIRANFDEKYPEVVRVVNVQLGSEDFSGEHTSTEVCG 783

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS---HLMGQDEKLKSLASFLK-- 750
           GTH+++T  I  + +V E  I  G+RR+  +T ++ R     L+  +++L+ L   LK  
Sbjct: 784 GTHLTNTKTIQDVAVVGEEGISKGVRRLTLVTNEQCRKSKADLLHYEKRLEELEKNLKPI 843

Query: 751 -----------VSQGNVVGRVEEI--WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
                      ++    + R+  +    E  K+  +  KR L    E L   +++     
Sbjct: 844 NFTKDDTREASLNAAENMTRLTALRGEAEVHKMLPLLGKRNLMKKFEQLIDQQVSAGKAH 903

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
              ++ +   +   V++ LQ +    +         +  +VL    +DL     ++++
Sbjct: 904 QKRLANIAKMKAVEVVEKLQSQKYDEV--EFTEKTSEHPAVLRASVDDLEGDLKSLNV 959


>gi|302666339|ref|XP_003024770.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517]
 gi|291188840|gb|EFE44159.1| hypothetical protein TRV_01052 [Trichophyton verrucosum HKI 0517]
          Length = 925

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/958 (30%), Positives = 448/958 (46%), Gaps = 124/958 (12%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           +R TFL++F+KNGH            DP     NS     K                 QK
Sbjct: 23  VRDTFLDYFKKNGHTF-------GTVDP-----NSDFAQLK------------RAHNSQK 58

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
                    DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY
Sbjct: 59  ---------DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 109

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T ++ +E        EA  +W+ + G+  D I+     DNFW M + GPCGPCSEI +D
Sbjct: 110 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 168

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +           +++    +EIWN VF+Q+ ++  +    LP   +DTG+G ER+ ++LQ
Sbjct: 169 RIGGRNAAH-LVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVSILQ 227

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADG 289
            K++NYD D+F  L  A + +TG +                 +RV+ DHLR+ +F I DG
Sbjct: 228 NKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAITDG 287

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLI 347
             P NEGRGYV+RR++RR + YAR     E       L+PAL  +MG  +PE+ + +  +
Sbjct: 288 AAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKRKQTDV 347

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            E L  E+  F KTLDRG    +             L G   ++LYDT G P+D+ + + 
Sbjct: 348 MEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGKLPGADVWRLYDTFGFPVDLTRLMA 407

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             R L  ID   F +A    R +A+  S G     ++ +  ++              L  
Sbjct: 408 EERQLT-IDDAEFEEA----RLKAKEASKGQAKTASDLLKLTVHTL---------STLEK 453

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYA 522
           +   K D      K        + + +KAI    ++++      + +++ ++ D+T FYA
Sbjct: 454 NGVPKTDDDAKFGK------GNIVANIKAICHGKDVIDSTKDIPANEQIGIILDKTNFYA 507

Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  DTG  + DG   L + +VQ    G  +H   ++ G      S++   D   R 
Sbjct: 508 EQGGQEYDTGKIVIDGQAELDVQNVQMY-GGYVLHTGFIKYGNFSVNDSVIAEYDELRRW 566

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +  NH+ TH+L+ AL  +LG  + Q GS +  + LRFD +H   I+ ++L+ IE    D
Sbjct: 567 PIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTD 626

Query: 642 IIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYE-----------DGGVH 689
            I QN  V ++ +    A    G  A+ G  Y D VRVVSV  E                
Sbjct: 627 YIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEILKNVKDPRWEGV 686

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM------------- 736
           S   CGGTHV  TG+I  L I+ ES I  GIRRI A+TG+ A                  
Sbjct: 687 SIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVAREFGERLNRFE 746

Query: 737 ------GQDEKLKSLASFLKVSQGNVVGRVE------EIWEEYRKLQLIHAKRKLQLNVE 784
                  +D ++KSL   L     + V + +      +I ++    Q    K +++  ++
Sbjct: 747 KMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKAAQKAEVKTAID 806

Query: 785 DLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            +S          + +  +    + K +   ++ ++ K+ SG  + V  +   K +    
Sbjct: 807 AISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKL-SGKALYVFAADASKVAHGCY 865

Query: 842 VTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           VT DL     +A + A   + ++ GG  GG+  +A   G   NK D+A+     +L+K
Sbjct: 866 VTPDLTTKGASANEWASAVSSII-GGKAGGKAPVAIGNGTEVNKVDEALDEATKYLEK 922


>gi|51260239|gb|AAH79844.1| Aars2 protein [Mus musculus]
          Length = 975

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/961 (28%), Positives = 452/961 (47%), Gaps = 90/961 (9%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 30  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 89

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 90  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 149

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 150 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 208

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    +            + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 209 GPCTEIHYDLAGGVGS---------PQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 259

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G            EG     +RV+ DH+R
Sbjct: 260 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 319

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +L      +  L+P +   +GSAYPE
Sbjct: 320 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 379

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+ L      G+P
Sbjct: 380 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 439

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD+++ +L  +G+  +D     Q  +++   A+  +    +   +++   +     A + 
Sbjct: 440 LDLVELMLEEKGVK-LDTAGLEQLAQKE---AQHRAQQAEADQEDRLCLDVH----ALEE 491

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +    +  +    +    L      +     + +++   + G  V    +GQ+  ++ D+
Sbjct: 492 LHRQGIPTTDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQRCGLLLDR 551

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G  +  G +  +  V   +  G F+ H  +    L+    + L +D
Sbjct: 552 TNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQVQLYVD 611

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    + H+ATHLL  AL   LG    Q GS + P+ LRFDV     +T+ +L+++E
Sbjct: 612 KAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQLRTVE 671

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDG 686
             V +++ Q+ PV    +             L   Y D V            +    +  
Sbjct: 672 SYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPASQAA 731

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLK 743
              S  LC GTH+ STG +  L I+ E  +  GI R+ AITG   Q+AR       ++++
Sbjct: 732 MHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQEVE 791

Query: 744 SLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--AKRK 778
           + +  L     ++    R+                     +E+    + LQ     A RK
Sbjct: 792 AASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANTAIRK 851

Query: 779 LQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           L+         ++    ++   +   +S      L  V+  L K+  S  ++L+      
Sbjct: 852 LEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLLLSPQPTG 911

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                  V +D    F A   A      +GG   G R  +AQ  G   +  + A+    +
Sbjct: 912 SVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGHTAD-LEAALGTARA 969

Query: 895 F 895
           +
Sbjct: 970 Y 970


>gi|52630311|ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus]
 gi|115502845|sp|Q14CH7|SYAM_MOUSE RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|109730201|gb|AAI13780.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
 gi|109730687|gb|AAI13173.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
          Length = 980

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/961 (28%), Positives = 452/961 (47%), Gaps = 90/961 (9%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 95  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    +            + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYDLAGGVGS---------PQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G            EG     +RV+ DH+R
Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +L      +  L+P +   +GSAYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+ L      G+P
Sbjct: 385 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 444

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD+++ +L  +G+  +D     Q  +++   A+  +    +   +++   +     A + 
Sbjct: 445 LDLVELMLEEKGVK-LDTAGLEQLAQKE---AQHRAQQAEADQEDRLCLDVH----ALEE 496

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +    +  +    +    L      +     + +++   + G  V    +GQ+  ++ D+
Sbjct: 497 LHRQGIPTTDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQRCGLLLDR 556

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G  +  G +  +  V   +  G F+ H  +    L+    + L +D
Sbjct: 557 TNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQVQLYVD 616

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    + H+ATHLL  AL   LG    Q GS + P+ LRFDV     +T+ +L+++E
Sbjct: 617 KAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQLRTVE 676

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDG 686
             V +++ Q+ PV    +             L   Y D V            +    +  
Sbjct: 677 SYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPASQAA 736

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLK 743
              S  LC GTH+ STG +  L I+ E  +  GI R+ AITG   Q+AR       ++++
Sbjct: 737 MHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLSQEVE 796

Query: 744 SLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--AKRK 778
           + +  L     ++    R+                     +E+    + LQ     A RK
Sbjct: 797 AASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANTAIRK 856

Query: 779 LQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           L+         ++    ++   +   +S      L  V+  L K+  S  ++L+      
Sbjct: 857 LEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLLLSPQPTG 916

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                  V +D    F A   A      +GG   G R  +AQ  G   +  + A+    +
Sbjct: 917 SVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGHTAD-LEAALGTARA 974

Query: 895 F 895
           +
Sbjct: 975 Y 975


>gi|73957020|ref|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
           (AlaRS) isoform 3 [Canis familiaris]
          Length = 852

 Score =  655 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/858 (30%), Positives = 405/858 (47%), Gaps = 83/858 (9%)

Query: 109 LAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNF 160
           +A +LLT+EF +   RLY+T +  DE        E  ++W+ + GL   KI+     DNF
Sbjct: 1   MALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNF 59

Query: 161 WSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           W M +TGPCGPCSEI +D+           +++    +EIWNLVF+Q+ +++      LP
Sbjct: 60  WEMGDTGPCGPCSEIHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLP 118

Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVN 271
           K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG +               + 
Sbjct: 119 KKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMA 178

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
           +RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ Y+   L  +      L+  + 
Sbjct: 179 YRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVV 238

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  LG    + GD A+ L
Sbjct: 239 QSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTAWLL 298

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
           YDT+G P+D+   I   +G+  +D+  F    EE+R  A+  S G G+G  + I   +  
Sbjct: 299 YDTYGFPVDLTGLIAEEKGM-VVDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI-- 351

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
            Y   +     L       K +               V + V A+ +    VEE  +GQ+
Sbjct: 352 -YAIEELREKGLEATEDSPKYNYH--SDSSGSYTFENVVATVVALRRDKMFVEEVSTGQE 408

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
             VV D+T FYAE GGQ+ D G  +        +++ T    +  G +V H     G LR
Sbjct: 409 CGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLR 468

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    
Sbjct: 469 VGDQVRLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGA 527

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--- 682
           +++ ++K  E+  N +I    PV T+      A A  G  A+    Y D VRVVS+    
Sbjct: 528 MSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 587

Query: 683 --------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                      G + S   CGGTH+ ++       IVSE +I  GIRRI A+TG  A+  
Sbjct: 588 SELLEDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 647

Query: 735 LMGQDEKLKSLA---SFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQ 780
           L   +    SL+   + +K       +V   + ++ E        +++K +     + L+
Sbjct: 648 LRKAESLKNSLSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLK 707

Query: 781 LNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQ 821
             ++DL     ADV                     +  + S   +K L   +   +    
Sbjct: 708 KIMDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSP 767

Query: 822 SGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
               ML  +  E  + + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G
Sbjct: 768 ETSAMLFTVDNEAGRITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATG 826

Query: 880 PNGNKADQAIAGVASFLK 897
            N     +A+    SF +
Sbjct: 827 KNVGCLQEALQLATSFAQ 844


>gi|159473717|ref|XP_001694980.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276359|gb|EDP02132.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 750

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 252/754 (33%), Positives = 373/754 (49%), Gaps = 52/754 (6%)

Query: 8   RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAVT 62
           R  F EFF+  GH    SSS++P NDPTL+FTN+GM  FK +F G   P       +   
Sbjct: 6   RAAFNEFFETKGHTYWASSSVVPHNDPTLLFTNAGMNQFKPVFLGTVDPNSDMGKMKRAC 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+RAGGKHNDLD+VG+   HHTFFEMLGN + G Y   +A+ L          L  
Sbjct: 66  NSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNCACGRYPCTQALLLIAHARLPLALLPA 125

Query: 123 RRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
            RLY T +          D+EA ++W +   L   +++     +NFW M + GPCGPC+E
Sbjct: 126 ERLYATYFRGDPAMGLPADDEAREIWLRF--LPESRVLPYGNKENFWEMGDQGPCGPCTE 183

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I FD+           + +    +EIWN VF+QF ++       LP   +DTGMGLER+ 
Sbjct: 184 IHFDRIGG-RDAAALVNADDPNVLEIWNNVFIQFNREPDGSLKSLPAKHVDTGMGLERIT 242

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFL 285
           +VLQ K +NY  DLF  +  A + VTG +   +           + +RV+ DH+R+ SF 
Sbjct: 243 SVLQGKMSNYATDLFGPIFDAIQAVTGARDYTDKIGKDDSDGVDMAYRVVADHIRTLSFS 302

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           IADG  P NEGR YVLRRI+RRA+ Y R  LG  E     L+  +    G  +PEL++ +
Sbjct: 303 IADGARPGNEGRDYVLRRILRRAVRYGREKLGAKEGFFAGLVDVVVAHFGGFFPELVKQR 362

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             I   LR E+  F +TL +G+       +     + + G  AF L+DT G P+D+ Q +
Sbjct: 363 DTIFGVLREEEAAFSRTLIKGIERFKKAAAGATDGK-IPGPEAFVLWDTFGFPVDLTQLM 421

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              RG+A +D+  +  A+ E R   +    G   G    +  S+        + G     
Sbjct: 422 AEERGMA-VDMAGYEAAMAEARE--KMGETGRHGGFHHGVASSMVCAKLHGTYTG--ATV 476

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--EAVSGQKVEVVFDQTPFYA 522
            S  +           P   +  VS+ V AI+  G      +   G  V +V D T FYA
Sbjct: 477 NSIPISPPPPDWQNDAPKYGSADVSAKVLAILTSGGFAAGSQEAEGGLVGLVLDTTSFYA 536

Query: 523 EAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTID 576
           E+GGQ       +           ++      A G  +H   V E G +    ++ +++D
Sbjct: 537 ESGGQHFSPSPELLTKFSSPSTSPELLTNPTVAAGYVLHVGEVAEGGQVAVGEAVTVSVD 596

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           Y+ R  +  NH+ TH+L++AL ++LG HV Q GS + PD LRFD +++ P+ +A+L ++E
Sbjct: 597 YERRGLIKPNHTFTHVLNYALKSVLGDHVDQKGSIVLPDKLRFDFSNAGPVEAAQLAAVE 656

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YE 684
               + +A  +PV    +    A + +G  A+ G  Y D VRVVS+             +
Sbjct: 657 KICREAVAAAMPVFGTEVPLAQAKSINGLRAVFGEVYPDPVRVVSIGRSVADLLADPKAD 716

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
               +S   CGGTH+++T E     ++SE  I  
Sbjct: 717 ANAAYSIEFCGGTHLANTQEAEAFALLSEEGIAK 750


>gi|300794887|ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus]
          Length = 983

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/950 (28%), Positives = 430/950 (45%), Gaps = 89/950 (9%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      
Sbjct: 37  AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAG 96

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 97  FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 156

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +TGP
Sbjct: 157 VYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTGP 215

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D                 + +E+WNLVFMQ  ++       LP+  +DTGM
Sbjct: 216 CGPCTEIHYD---------LAGGAGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 266

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHL 279
           GLER+  VLQ + + YD DLF  L+ A  Q  G            EG     +RV+ DH+
Sbjct: 267 GLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADHI 326

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLRRI+RRA+ ++  +L      +  L+P +   +G AYP
Sbjct: 327 RTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 386

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGL 396
           EL ++   I   +  ++  F  +L RG  +++  L  LG  ++   +VA+ L      GL
Sbjct: 387 ELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 446

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+++ +L  +G+  +D     +  +E+      H         E+         G  Q
Sbjct: 447 PLDLVELMLEEKGVP-LDTAGLERLAQEEAQ----HRALQAEPVQEQGLRLNVHALGELQ 501

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S    +    L            + +++   + G  V     GQ   ++ D
Sbjct: 502 RRGVPPTDDS---PKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQHCGLLLD 558

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  +  G +  +  V + +  G F+ H +V    LR    + L +
Sbjct: 559 KTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQVQLHV 618

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R      H+A HLL+ AL  +LG    Q GS + P+ LRFDV    P+T  +L+++
Sbjct: 619 DEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRAV 678

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYED 685
           E  V   + ++  V    +             L   Y D V            +    + 
Sbjct: 679 EVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQA 738

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKL 742
               S  LC GTH+  TG I  L I+ E  +  GI R+ A+ G   Q+AR       +++
Sbjct: 739 ALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQEV 798

Query: 743 KSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--AKR 777
           ++ A+ L     +V    R+                      E+    + LQ     A R
Sbjct: 799 EAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTAVR 858

Query: 778 KLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           KL++        ++     +   +   +S      L  V+  L  +     ++L+     
Sbjct: 859 KLEMGQAAQKTQELLQRHMEGPLIVDTVSTESLSMLVKVVRQLCTQAPGTSVLLLSPQPL 918

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
            K      V +     F A   A      +GG   G R  +AQ  G   +
Sbjct: 919 GKVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 967


>gi|39938791|ref|NP_950557.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
 gi|81565108|sp|Q6YQR8|SYA_ONYPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|39721900|dbj|BAD04390.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M]
          Length = 864

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/934 (30%), Positives = 440/934 (47%), Gaps = 110/934 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G + P ++ +
Sbjct: 1   MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQTPPFRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T VQKC+R     ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F 
Sbjct: 61  TNVQKCIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFA 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT + +D++ ++ W  + G+  + +I +    NFW +   GP GPC+EIFFD+
Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVEKNHLIPL--KSNFWQIG-PGPSGPCTEIFFDR 172

Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G+        L     E +R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER+
Sbjct: 173 GKTFDPRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ    N++ DLF  LI+A E++T +KY G    + ++I DHL++  F I DG +  
Sbjct: 233 ACILQNTKTNFETDLFFPLIKALEKMTQIKYTGQE--SFKIIADHLKTLVFAINDGAVLT 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  
Sbjct: 291 NEKRGYVLKKLLRRAANEGKKLGLDKPFLHQLVPPTAAMMKDFYKELCTNQEIIAKVLLQ 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++  F +TL          L HL ++  L+G   FKLYDT+G+P D++ D    + +   
Sbjct: 351 QENIFEQTLKTAEKTF---LQHLTQN-TLSGQNFFKLYDTYGIPEDLILDYAKKKNITT- 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + L + ++ ++ +         ++   S  +    ++FIGY             
Sbjct: 406 DYQKFQELLHDHQNLSKQNQTSQIHMNKQE--ESFLQFLTPSEFIGY------------- 450

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G             +V ++TPFYA  GGQ+ D G 
Sbjct: 451 ----------TNFTCKTKVIKVFDKG-------------IVLEKTPFYANMGGQIEDEGW 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                   ++T + K   G  +H     +G       +   I+   R Q+S +H+ATHLL
Sbjct: 488 IDNT----KVTKITKLPNGQILHEV---QGNFCEGQEVYACIEKTKRNQISYHHTATHLL 540

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
              L   LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    
Sbjct: 541 EAVLQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQ 600

Query: 654 MNREDAIASGAAALL---GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++  DA    A  L      KY D+VR+VS+        S  LCGGTH ++T ++    I
Sbjct: 601 LSIPDAQKKYATLLEQNQKAKYKDKVRIVSI-----DTFSVDLCGGTHATNTKDLEHFTI 655

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQ------------- 753
           +S  SI +GI RIEA+     +  L  +       L  L    K  Q             
Sbjct: 656 LSCESISSGIYRIEAVCNNNCQESLNAKLVPYQNDLHQLTQKAKSLQTQNLIFDVKNFPP 715

Query: 754 -----GNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIISE 803
                 +++   + I  + + L L   K     +K  +  E            M  I  E
Sbjct: 716 ITQSYQDILNYQKHIKAQQQALVLFEKKVLEYHQKNMVQAESNFLPPQITKKMMLTIEEE 775

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              + LK  M+ +  K    ++ L  +  EK   +            +A +L + +  ++
Sbjct: 776 KPLEVLKFFMNHIFDKYHLEVLFLSYVQPEKIVFLC------KSKTLHAGNLIKEAVSLV 829

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG   +AQ G       +Q +  V + L+
Sbjct: 830 C-GSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862


>gi|297489033|ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos
           taurus]
 gi|296474486|gb|DAA16601.1| alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus]
          Length = 983

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/954 (28%), Positives = 431/954 (45%), Gaps = 97/954 (10%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
            +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      
Sbjct: 37  AAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAG 96

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 97  FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 156

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +  D         E+  +W  + G+ A +++     +NFW M +TGP
Sbjct: 157 VYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTGP 215

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D                 + +E+WNLVFMQ  ++       LP+  +DTGM
Sbjct: 216 CGPCTEIHYD---------LAGGAGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGM 266

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHL 279
           GLER+  VLQ + + YD DLF  L+ A  Q  G            EG     +RV+ DH+
Sbjct: 267 GLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADHI 326

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLRRI+RRA+ ++  +L      +  L+P +   +G AYP
Sbjct: 327 RTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 386

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGL 396
           EL ++   I   +  ++  F  +L RG  +++  L  LG  ++   +VA+ L      GL
Sbjct: 387 ELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLGL 446

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+++ +L  +G+  +D     +  +E+      H         E+         G  Q
Sbjct: 447 PLDLVELMLEEKGVP-LDTAGLERLAQEEAQ----HRALQAEPVQEQGLRLNVHALGELQ 501

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S    +    L            + +++   + G  V     GQ   ++ D
Sbjct: 502 RRGVPPTDDS---PKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQHCGLLLD 558

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  +  G +  +  V + +  G F+ H +V    LR    + L +
Sbjct: 559 KTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQVQLHV 618

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R      H+A HLL+ AL  +LG    Q GS + P+ LRFDV    P+T  +L+++
Sbjct: 619 DEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAPLTPEQLRAV 678

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYED 685
           E  V   + ++  V    +             L   Y D V            +    + 
Sbjct: 679 EVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQA 738

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKL 742
               S  LC GTH+  TG I  L I+ E  +  GI R+ A+ G   Q+AR       +++
Sbjct: 739 ALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQAREVGQRLAQEV 798

Query: 743 KSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH--AKR 777
           ++ A+ L     +V    R+                      E+    + LQ     A R
Sbjct: 799 EAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLKALQRRANTAVR 858

Query: 778 KLQL-----NVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVG 829
           KL++       E+    +         ++  V ++    L  V   L  +     ++L+ 
Sbjct: 859 KLEMGQVRGGAEEKHEREEKG----KLVVDSVSAECVSILSWVCRXLCTQAPGTSVLLLS 914

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
                K      V +     F A   A      +GG   G R  +AQ  G   +
Sbjct: 915 PQPLGKVLCACQVAQSATPAFTAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD 967


>gi|83775369|dbj|BAE65489.1| unnamed protein product [Aspergillus oryzae]
          Length = 939

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/891 (31%), Positives = 431/891 (48%), Gaps = 95/891 (10%)

Query: 76  DLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEE 135
           DLD+VG+ + HHTFFEMLGN+SFG YFK+ AI  +W+L+TK + LD +RLY+T ++  +E
Sbjct: 73  DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKIYGLDPQRLYVTYFEGSKE 132

Query: 136 --------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                   A +LW K  G+  D I+     DNFW M + GPCGPCSEI +D+        
Sbjct: 133 GGLSPDLEAKELW-KAVGVPEDHILPGNMKDNFWEMGDQGPCGPCSEIHYDRIGG-RNAS 190

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
              +++    +EIWN VF+Q+ +++ +    LP   +DTGMG ER+ +VLQ K++NYD D
Sbjct: 191 NLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGMGFERLVSVLQNKSSNYDTD 250

Query: 248 LFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +F  L Q  + +TG +                 +RV+ DH+R+ +F I+DG+ P NEGRG
Sbjct: 251 VFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHVRTLTFAISDGVAPNNEGRG 310

Query: 299 YVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356
           YV+RR++RR   YAR     E       ++P L  +MG  +PE+ + +  + E L  E+ 
Sbjct: 311 YVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMFPEVKRKQQDVMEILDEEEI 370

Query: 357 RFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
            F KTLDRG    +     +    D+ L+G   ++LYDT G P+D+ + +   RGL  ID
Sbjct: 371 SFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFGFPVDLTRIMAEERGLR-ID 429

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F +A    RSRA+  S G      + +   + +                K  K +  
Sbjct: 430 DTEFEEA----RSRAKEASKGQKKAAADTVKLDVHD--------------LGKLEKMNDV 471

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                        +++ VKAI          E+   G ++ ++ D+T FYAE GGQ  DT
Sbjct: 472 PKTNDSAKFDRGNITAQVKAIYHGKSFHLSTEQIPEGDQLGLILDRTNFYAEQGGQENDT 531

Query: 532 GCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           G  + DG   L++ DVQ    G  +H   ++ G L     ++   D   R  +  NH+ T
Sbjct: 532 GRIVIDGQAELEVGDVQ-LYAGYVLHTGFMKYGSLSVGDEVICEYDELRRWPIRNNHTGT 590

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H+L+ AL  +LG  V Q GS +  + LRFD +H  P+T  +L+ IED   + I QN  V 
Sbjct: 591 HILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKDLERIEDISTEYIRQNCAVY 650

Query: 651 TRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-----------DGGVHSSALCGGTH 698
           ++ +    A   SG  A+ G  Y D VRVVSV  E                S   CGGTH
Sbjct: 651 SQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILKNVKDPRWEKVSIEFCGGTH 710

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-------------------GQD 739
           V  TG+I  L I+ ES I  GIRRI A+TG+ A                         ++
Sbjct: 711 VQKTGDIKELVILEESGIAKGIRRIIAVTGEDAHEVQRVALGFEKRLDRLEAMALGPEKE 770

Query: 740 EKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
           +  K +   L     + V +           ++I +  +  Q + +K+ L+         
Sbjct: 771 QDAKQIQVDLSQLLISAVQKSRFRERFAHINKQIIDSQKAQQKLESKKALEAITSYFENP 830

Query: 790 KIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGII-MLVGISKEKKASVLIVVTEDLL 847
           +  D +  ++ +    ++K +   ++ ++ K+Q   + +L   S + +      +++   
Sbjct: 831 ENKDKSWLVARLPISANAKAVSESLNHVKSKLQDKTVYVLAADSNQGRVVHGCYMSK--- 887

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              +A D A + +  +GG  GG  P      G N +K D+AIA  + +L K
Sbjct: 888 -GASASDWAAIVSTAVGGKAGGKGPTS-IGNGTNPDKTDEAIALASDYLSK 936


>gi|71895377|ref|NP_001026227.1| probable alanyl-tRNA synthetase, mitochondrial [Gallus gallus]
 gi|53136426|emb|CAG32542.1| hypothetical protein RCJMB04_28n18 [Gallus gallus]
          Length = 816

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/767 (34%), Positives = 387/767 (50%), Gaps = 46/767 (5%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              IR  FL FF+ K+GH  LPS+ + P  DPTL+F NSGM  FK +F G   P      
Sbjct: 31  AGQIRAAFLRFFEEKHGHRCLPSAPVRPRGDPTLLFVNSGMNQFKPVFLGTAHPRSELAQ 90

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + V   QKCVRAGGKHNDL++VGR   HHTFFEMLGN+SFG YFKE A  +AW+LLT+ 
Sbjct: 91  QRRVVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTEV 150

Query: 118 FDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T +  D        EE   +W  + G+ A+ ++     DNFW M +TGPC
Sbjct: 151 YKIPKDRLYVTYFGGDSSLGLNADEECRDVWLSL-GVPANHVLPFPMKDNFWEMGDTGPC 209

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D            ++     +EIWNLVFMQ+ ++       LP+  +DTGMG
Sbjct: 210 GPCTEIHYDHVGGGRNASALVNQGSPDVVEIWNLVFMQYSREVDGNLLPLPQHHVDTGMG 269

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLR 280
           LER+ TVLQ K +NYD DLF  ++ A  +         + G    G+  + +RV+ DH+R
Sbjct: 270 LERLVTVLQNKRSNYDTDLFTPILDAIHKGCGGPRYQGLVGNADVGHVDMAYRVVADHVR 329

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           +    I DGI P   G   VLRRI+RRA+ + A +L     L+  L+PA+   +G AYPE
Sbjct: 330 TLCVCITDGIYPGLSGAELVLRRILRRAVRFCAEVLHAPRGLLASLVPAVVEVLGDAYPE 389

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +    + +     +  F  +L+RG  +++  +  +        +VA+ LY   G PLD
Sbjct: 390 LKKNADQVMDIFNENEVAFLSSLERGRRIIERTVQQMKPSADFPAEVAWSLYGNLGFPLD 449

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           ++  +L  +G+  +D  +FN+ + E    A+  + G   G   +      + +   Q   
Sbjct: 450 LIDLMLEEKGIR-LDSAAFNELVLED---AKRKAHGPQEGRQLEGTVVHLDVHSMAQLQR 505

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            ++       K   K+          +   + +  + +   + +E  +GQ   V+ D+T 
Sbjct: 506 DNIPATDDSPKYSYKLGQHGQ--YEFSPCQATILMLYRDQSLQKEVGAGQHCGVILDRTN 563

Query: 520 FYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           FYAE GGQ  D G  I  G +     +  V+    G +V H +     LR    + L +D
Sbjct: 564 FYAEQGGQASDRGYLIRLGQQDILFPVESVR--LCGGYVIHEVTAVETLRAGDQVQLFVD 621

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R     NH+ATHLL+ AL  +LG    Q GS +T + LRFD     P+T  +L+ +E
Sbjct: 622 EVQRLACMTNHTATHLLNFALRHVLGDSTEQRGSHVTAEQLRFDFNIKGPVTVEQLQQVE 681

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------- 688
             V D+I +N  V    +    A        L   Y D VR+VS+      V        
Sbjct: 682 QVVQDVIKRNEAVYMAEVPLALARRVQGLRALDEGYPDPVRIVSLGVPVETVLTSNSQAA 741

Query: 689 --HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              S  LC GTH+  TG +  L IVSE  +  GI R+ A+TG++A+ 
Sbjct: 742 MQTSVELCCGTHLLQTGAMEDLAIVSERQLVKGISRVIAVTGRQAKQ 788


>gi|126632676|emb|CAM56636.1| novel protein similar to vertebrate aminolevulinate delta-synthase
           1 (ALAS1) [Danio rerio]
          Length = 917

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/945 (31%), Positives = 443/945 (46%), Gaps = 95/945 (10%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60
           +R  F++FF +  GH ++PSSS+ P  DP+L+F N+GM  FK I  G   P      Y+ 
Sbjct: 2   VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL +VG+   HHTFFEMLGN+SFG YFK  A  +AW LLT+E+ +
Sbjct: 62  VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 121

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             +RLY++ +          DEE   +W  + GL AD ++     DNFW M ETGPCGPC
Sbjct: 122 PAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D            + +    +EIWNLVFMQ+ +++      LP+ S+DTGMGLER
Sbjct: 181 TEIHYDHI-GNRNAASLVNADSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLER 239

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLRSSS 283
           + TVLQ K +NYD DLF  L+ A  Q          TG        + +RV+ DH+R+  
Sbjct: 240 LVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTIC 299

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
             IADG+ P   G   VLRRI+RRA+ ++  +L   E  +  L+P +   +G AYPEL  
Sbjct: 300 VCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVANLLGDAYPELNT 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIM 401
               I + +   +  F  +L +G  ++D  LS++ ++       VA+ LY   G PLD++
Sbjct: 360 ESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDLI 419

Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461
             +L  +G   +D     + LE++  ++            E       + +   +     
Sbjct: 420 DLMLEEKG-KIVDKKEM-KVLEDEYEKSEE---------DEGEKLDQLDLHSLAELQRQR 468

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
           +       K    V      +       + V A+   G +V E   GQ   V+ DQT FY
Sbjct: 469 VPHTDDSPKYCYSVGSDGQYV--FEPCKASVLALYCDGALVSEVRQGQHCAVILDQTSFY 526

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           AE GGQ  D G    DG++  +  V+  +  G +V H +     LRT   + L +D   R
Sbjct: 527 AEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVDEAWR 586

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               INH+ATH+L+ AL  +LG  VSQ GS  + + LRFD +    +T +EL+ +E+ V 
Sbjct: 587 LGCMINHTATHVLNFALRELLGPVVSQRGSHCSANRLRFDFSVKGSLTVSELQKVEELVL 646

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV--------SVEYEDGGVHSSA 692
           +II QN  V    +    A        +   Y D VRVV         +  E     S  
Sbjct: 647 NIIRQNADVHVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLASERAEQTSVE 706

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASFL 749
           LC GTH+  TG I    +VSE  +  G+ RI A TG    +AR       E+L+SL + +
Sbjct: 707 LCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQEELESLEARM 766

Query: 750 KVSQGNVVGRVEEIWEE---------------YRKLQLI-HAKRKLQLNVEDLSCHKIAD 793
            +S    +   + + +E               +++L+L    K  L+ +   +   +I +
Sbjct: 767 GLSNTLSIHEAKRLSKEVGHQINAVDITPMPQWKRLELQTRLKAVLKSSNNSIRKLEIKE 826

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
                                 L  K  +  +++  I  +         +       +A+
Sbjct: 827 AAL---------------KAKELLDKHSNKPVVVDLIQTD---------SISGSTGGSAI 862

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + A      L GG   G    A+  G N  K +  +A +  + ++
Sbjct: 863 EWALSVCSRL-GGNAEGAKDTAKGVG-NAVKVED-VAEILHWAEE 904


>gi|126310118|ref|XP_001367753.1| PREDICTED: similar to alanyl-tRNA synthetase like [Monodelphis
           domestica]
          Length = 1109

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/911 (30%), Positives = 443/911 (48%), Gaps = 84/911 (9%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57
            + S IRT FL FF+ ++GH+L+PS+S++P +DP L+F N+GM  FK IF G   P    
Sbjct: 70  PSASVIRTAFLHFFRDRHGHQLVPSASVMPRSDPGLLFVNAGMNQFKPIFLGTVDPRSEM 129

Query: 58  --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114
             ++ V   QKCVR GG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LL
Sbjct: 130 ARFRRVANSQKCVRTGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 189

Query: 115 TKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166
           T  +++ Q RL++T +          D E+  +W  + G+ + +++    ++NFW M E 
Sbjct: 190 THIYEIPQDRLWVTYFGGNPPEGLAPDYESRDIWLSL-GVPSSRVLSFGPSENFWEMGEI 248

Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           GPCGPC+EI +D    +            + +E+WNLVFMQ+ ++      +LP+  +DT
Sbjct: 249 GPCGPCTEIHYDLSGGVG---------PPQLVELWNLVFMQYNREADGSLQLLPQRHVDT 299

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVD 277
           GMGLER+  VLQ K + YD DLF  L+ A +Q           G    G+  + +RV+ D
Sbjct: 300 GMGLERLVAVLQNKRSTYDTDLFSPLLTAIQQGCRAPPYQGQVGKADGGHTDMAYRVVAD 359

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H+R+ S  +ADG+ P   G   VLR+I+RRA+ ++  +L      +  L+P +   +G A
Sbjct: 360 HIRTLSICMADGVYPGMSGASLVLRQILRRAIRFSSEVLQAPPGFLSSLVPIVVETLGDA 419

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
           YPEL +    I   +  E+  F  +L+RG  ++D  L  LG   +   +VA+ L    GL
Sbjct: 420 YPELQKNTTQITSLVAEEETAFLSSLERGRRVIDRTLQQLGPSHLFPAEVAWSLSGNLGL 479

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD++  +L  +G+  +D     Q  +E+  R    S    +   +K    L + +  +Q
Sbjct: 480 PLDLVGLMLEEKGV-QLDSAGLEQLAQEEAQR---RSQAQQAKPAKKAELRL-DIHALSQ 534

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                +       K +  +L      +     + I++     G   +    GQ+  ++ D
Sbjct: 535 LQRQGVPPTDDSSKYNYSLL-PNGSYEFGACEAEIIQLYTLDGAATDSVGGGQRCGLLLD 593

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  I  G +  +  V   +  G F+ H ++    L+    + L +
Sbjct: 594 KTNFYAEQGGQACDRGYLICKGQQDVLFPVIGAQIYGGFILHEVIALETLKVGDQVQLHV 653

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      H+ATHLL  AL   LG +  Q GS ++P+ LRFDV    P+TS +L+++
Sbjct: 654 DEEWRLGCMKKHTATHLLSWALRQELGPNTQQCGSHLSPERLRFDVATLAPLTSEQLQAV 713

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYED 685
           E+ +   + Q+ PV    +  E          L   Y D V            ++   + 
Sbjct: 714 EETIRVAVGQDKPVYMAEVALELTTQIPGLRSLDEVYPDPVRVVSVGVPVAIALAPTSQA 773

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKL 742
               S  LC GTH+  TG I  L IV E  +  GI R+ A+TG   Q+AR       +++
Sbjct: 774 ALQTSVELCCGTHLLRTGAIGDLTIVGEKPLSKGIVRLVAVTGEQAQQARDVGQNLAQEV 833

Query: 743 KSLASFLKVSQGNVVGRV-----------------------EEIWEEYRKLQLIH--AKR 777
           ++ ++ L     NVV                           E+    ++LQ     A R
Sbjct: 834 EAASARLHQGSQNVVEAQHLSKAVGRLSDTVDTAVMPQWQRRELQAILKRLQRRANTAIR 893

Query: 778 KLQLNVEDLSCHKIADVNFMS-HIISEVDSKELK---SVMDALQKKIQSGIIMLVGISKE 833
           KL++ +      +I + + +   I+  V ++ L     V+  L +++    ++L+     
Sbjct: 894 KLEIGLATAKSREILEKHPVGPFIVDTVPTESLSLLVKVVKQLCEQVPGASVLLLSPQAP 953

Query: 834 KKASVLIVVTE 844
            K      V +
Sbjct: 954 GKVLCACQVAQ 964


>gi|71033767|ref|XP_766525.1| alanyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68353482|gb|EAN34242.1| alanyl-tRNA synthetase, putative [Theileria parva]
          Length = 1011

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/902 (31%), Positives = 459/902 (50%), Gaps = 64/902 (7%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61
           +R  F+++F    H   PSSS++P NDPTL+F N+GM  FK+I  G+     E    + V
Sbjct: 64  VRKQFIDYFVSKNHVHWPSSSVLPHNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 123

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDL++VG+   H T+FEMLGN+SFG YFK  AI  AWDLLT  + LD
Sbjct: 124 CNSQKCIRAGGKHNDLEDVGQDCYHQTYFEMLGNWSFGAYFKPEAISYAWDLLTNVYKLD 183

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             RLY+T +  D+      E  ++W K   L +++I+   + DNFW MA+TGPCGPC+EI
Sbjct: 184 PSRLYVTYFGGDDSCEPDHETREIWLKF--LPSNRILPFGSKDNFWEMADTGPCGPCTEI 241

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D            + +    +E+WN+VFMQ+ +        LPK  +DTGMGLER+ +
Sbjct: 242 HYDHIGG-RDASSLVNADDPNVVELWNIVFMQYNRSRNGVLERLPKGCVDTGMGLERLCS 300

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNN---IVNHRVIVDHLRSSSFLIADGI 290
           VL    +NYD DL   +I    ++      Y+G N    V +RV+ DH+R  S  I+D +
Sbjct: 301 VLNNTNSNYDTDLLNDVILYISELLPELESYKGGNSPLDVAYRVVSDHIRCLSVAISDRV 360

Query: 291 LPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            P+N+GRGYVLRRI+RRA+ Y R      EP +  L+ ++   +G AYP L+  ++ IE 
Sbjct: 361 YPSNDGRGYVLRRILRRAVRYCRDYFNTREPFLHRLVRSVSKLLGHAYPNLVTERVNIES 420

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E+  F +TLD+G+     +++   + +++NG  AF LY ++G PLD+   +    G
Sbjct: 421 VVFDEERLFLQTLDKGVEKFKKMVAK-SEVKVINGQDAFLLYQSYGFPLDLTMLMARELG 479

Query: 410 LAGIDIISFNQALEEQRSRARAH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           + G+D+I +   L+  + ++ A             +++  SL      T      +L+  
Sbjct: 480 I-GVDVIGYYTELKLHQQKSEARIYTDFNSVESRCDRLLKSLSADRINT------ILQMC 532

Query: 467 KFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAV--SGQKVEVVFDQTPFYAE 523
             +  D K+       D    V  + + +IV    I++E    S   V +V D+TPFYAE
Sbjct: 533 NNVYTDDKLKYDWDSSDPVRKVFKAKLLSIVTADSILKELEYDSDDLVCLVTDRTPFYAE 592

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ+ DTG        L++  V K +  +F      E G+LR      L +DY  R ++
Sbjct: 593 GGGQIYDTGYIND----LEVLRVYKLSGLVFHFCLADESGLLRCGDECELKVDYHRRVKV 648

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATH+L+  L  IL     Q GS +  + L+FD ++ + +    ++ +E  + + +
Sbjct: 649 ASNHTATHILNFVLRDILEESSYQRGSQLDEEKLKFDYSYGQQLPDNLIRQVEQRMMEFV 708

Query: 644 AQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTH 698
               P+ T  +  + A+   G  A    KY + VRVV+V    E   G   S+ +CGGTH
Sbjct: 709 RSGAPLRTTEIEYKKALEIPGIRANFDEKYPEVVRVVNVQMGSEDFSGEHTSTEVCGGTH 768

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASFLK---VS 752
           +++T  I  + +V E  I  G+RR+  +T     R+R  L+   ++L  L   LK    +
Sbjct: 769 LTNTKTIQDVAVVGEEGISKGVRRLTIVTNDQCRRSRIDLLNYYQRLGDLEKSLKPINFT 828

Query: 753 QGNVVGRVEEIWEEYRKLQLIH------------AKRKLQLNVEDLSCHKIADVNFMSHI 800
           + +     E   E   KL  +             +KR L    E+L   +++        
Sbjct: 829 KDDTREASENASENMSKLTALRGEVEVHKMLPLLSKRNLMKKFEELIDLQVSAGKAHQKR 888

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLS 859
           ++ +   +   V++ LQ +   G +  +  + E  A +   V +DL     ++++  +  
Sbjct: 889 LANIAKIKAVEVVEKLQSQKYDG-MEFIEKTSEHPAVLRAAV-DDLEGDLKSLNVFVQTV 946

Query: 860 AK 861
           +K
Sbjct: 947 SK 948


>gi|148691494|gb|EDL23441.1| alanyl-tRNA synthetase like [Mus musculus]
          Length = 984

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/965 (28%), Positives = 452/965 (46%), Gaps = 94/965 (9%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+++ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ 
Sbjct: 95  RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D    +            + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYDLAGGVGS---------PQLVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q  G            EG     +RV+ DH+R
Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +L      +  L+P +   +GSAYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384

Query: 340 LIQAK----LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DT 393
           L +      + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+ L     
Sbjct: 385 LEKNSVKVLIEIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGN 444

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
            G+PLD+++ +L  +G+  +D     Q  +++   A+  +    +   +++   +     
Sbjct: 445 LGIPLDLVELMLEEKGVK-LDTAGLEQLAQKE---AQHRAQQAEADQEDRLCLDVH---- 496

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
           A + +    +  +    +    L      +     + +++   + G  V    +GQ+  +
Sbjct: 497 ALEELHRQGIPTTDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQRCGL 556

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLV 572
           + D+T FYAE GGQ  D G  +  G +  +  V   +  G F+ H  +    L+    + 
Sbjct: 557 LLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQVQ 616

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +D   R    + H+ATHLL  AL   LG    Q GS + P+ LRFDV     +T+ +L
Sbjct: 617 LYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTLLTTEQL 676

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVE 682
           +++E  V +++ Q+ PV    +             L   Y D V            +   
Sbjct: 677 RTVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALGPA 736

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQD 739
            +     S  LC GTH+ STG +  L I+ E  +  GI R+ AITG   Q+AR       
Sbjct: 737 SQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQSLS 796

Query: 740 EKLKSLASFLKVSQGNVVG--RV---------------------EEIWEEYRKLQLIH-- 774
           +++++ +  L     ++    R+                     +E+    + LQ     
Sbjct: 797 QEVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLKMLQRRANT 856

Query: 775 AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           A RKL+         ++    ++   +   +S      L  V+  L K+  S  ++L+  
Sbjct: 857 AIRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVKVVRQLCKQAPSISVLLLSP 916

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
                      V +D    F A   A      +GG   G R  +AQ  G   +  + A+ 
Sbjct: 917 QPTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR-VVAQGTGHTAD-LEAALG 974

Query: 891 GVASF 895
              ++
Sbjct: 975 TARAY 979


>gi|157818067|ref|NP_001100361.1| alanyl-tRNA synthetase, mitochondrial [Rattus norvegicus]
 gi|313471549|sp|D3ZX08|SYAM_RAT RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|149069292|gb|EDM18733.1| alanyl-tRNA synthetase like (predicted) [Rattus norvegicus]
          Length = 985

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/966 (28%), Positives = 448/966 (46%), Gaps = 95/966 (9%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 35  AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFK+ A  +AW+LLT+ 
Sbjct: 95  RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 154

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 155 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 213

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D                 + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 214 GPCTEIHYD---------LAGGMGPPQLVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 264

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q           G   EG     +RV+ DH+R
Sbjct: 265 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 324

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +L      + +L+P +   +G+AYPE
Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 384

Query: 340 LIQAKLL-----IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--D 392
           L +  +      I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+ L    
Sbjct: 385 LQKNSVKVLIWEIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSG 444

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
             G+PLD++Q +L  +G+  +D     Q        A+  +              L    
Sbjct: 445 NLGIPLDLVQLMLEEKGVK-LDTAGLEQL-------AQKEAQHRAQQAEAAQEEGLCLDV 496

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A + +    +  +    +    L      +     + +++   + G  V     GQ+  
Sbjct: 497 HALEELHRQGIPTTDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQRCG 556

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSL 571
           ++ D+T FYAE GGQ  D G  I  G +  +  V + +  G F+ H  +    L+    +
Sbjct: 557 LLLDRTNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQVGDRV 616

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D   R    + H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+T+ +
Sbjct: 617 QLYVDKAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPLTTEQ 676

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSV 681
           L+++E  V + + Q+ PV    +             L   Y D V          + ++ 
Sbjct: 677 LRTVESYVQEAVGQDKPVYMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAQALAP 736

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQ 738
             +     S  LC GTH+ STG +  L I+ +  +  GI R+ AITG   Q+AR      
Sbjct: 737 ASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVKGITRLLAITGEQAQQAREVGQSL 796

Query: 739 DEKLKSLASFLKVSQGNVVGR------VEEI--------------WEEYRKLQLIH---- 774
            ++++  +  L     +++        +  +               E+   L+++     
Sbjct: 797 SQEVEVASERLSRGSRDLLEAHRLSKDIGRLIEFTESAVIPQWQRQEQQTTLKMLQRRAN 856

Query: 775 -AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            A RKL+ +       ++    ++   +   +S      L  V+  L K+  S  ++L+ 
Sbjct: 857 TAIRKLEKSQATEKSQELLKRHSEGPLIVDTVSAQSLSVLVKVVRQLCKQAPSMSVLLLS 916

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
                       V +     F A   A      + GG   G P +AQ  G   +  + A+
Sbjct: 917 PQPTGSVLCACQVAQGATPTFTAEAWALAVCSHM-GGKAWGSPVIAQGTGHTAD-LEAAL 974

Query: 890 AGVASF 895
               ++
Sbjct: 975 RTARAY 980


>gi|85057696|ref|YP_456612.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123518184|sp|Q2NJ60|SYA_AYWBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84789801|gb|ABC65533.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 864

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/934 (29%), Positives = 443/934 (47%), Gaps = 110/934 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  +++FF    H +  S SLIP N+  L++ N+G+ P K  F G + P ++ +
Sbjct: 1   MTSFEIRQMWIKFFASKNHHIEKSFSLIPRNEDNLLWVNAGITPLKKYFDGTQTPSFRRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T VQKC+R      D+ NVG+T+RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F 
Sbjct: 61  TNVQKCIRTK----DIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFG 116

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
               +LYIT + +D++ ++ W  + G++ + +I +   DNFW +   GP GPC+EIFFD+
Sbjct: 117 FPLEKLYITYFFQDQDTYQYWLDL-GVNKNHLIHL--KDNFWQIG-PGPSGPCTEIFFDR 172

Query: 180 GECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERM 233
           G+        L     E +R+IEIWN+VF Q+    K   ++   LP  +IDTG GLER+
Sbjct: 173 GKTFDPRNKELIIEDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERL 232

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
           A +LQ    N++ DLF  LI+A E++T + Y G    + ++I DHL++  F I DG +  
Sbjct: 233 ACILQNTKTNFETDLFFPLIKALEKMTQITYTGQE--SFKIIADHLKTLVFAINDGAVLT 290

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           NE RGYVL++++RRA    + LG  +P +  L+P     M   Y EL   + +I + L  
Sbjct: 291 NEKRGYVLKKLLRRAANEGKKLGLEKPFLYKLVPPTVAMMKDFYKELCTNQEMIAKVLLQ 350

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           ++  F KTL          L HL ++  L+G   FKLYDT+G+P +++ D    + +   
Sbjct: 351 QENIFEKTLKTAEKTF---LQHLTQN-TLSGKNFFKLYDTYGIPENLILDYAKKKNITT- 405

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D   F + L EQ++ ++ +     +   ++   +       ++FIGY             
Sbjct: 406 DYQKFQELLHEQQNLSKKNQTSQTNMNKQE--EAFLHFLTPSEFIGY------------- 450

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
                           + V  +  +G             +V ++TPFYA  GGQ+ D G 
Sbjct: 451 ----------TNFACKTKVIKVFDEG-------------IVLEKTPFYANMGGQIEDEGW 487

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              +    ++T + K   G  +H     +G       +   ID   R+Q+S +H+ATHLL
Sbjct: 488 IDNN----KVTKITKLPNGQILHEF---KGNFCEGQEVYACIDKTKRKQISYHHTATHLL 540

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
              L   LG+H+ + GS +    LR+D  H + IT   L  IE  VN +I + +PV    
Sbjct: 541 EVVLQKQLGNHIKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKRVPVKIEQ 600

Query: 654 MNREDAIASGAAALL---GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           ++ +DA    A  L      KY D+VR+V++        S  LCGGTH ++T ++    I
Sbjct: 601 LSIQDAQKKYATLLEQNQKAKYKDKVRIVNI-----DTFSVDLCGGTHATNTKDLEHFTI 655

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQ------------- 753
           +S  SI +GI RIEA+  +  +  L  +      +L  L    K  Q             
Sbjct: 656 LSYESISSGIYRIEAVCNKNCQESLNAKLAPYQNELHQLTQKAKSLQTQNLDFEIKKFPP 715

Query: 754 -----GNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIISE 803
                 +++   + I  + + L L   K     +K  +  E        +   M  I  E
Sbjct: 716 ITKSYQDIINYQKHIKTQQQALVLFEKKVLEHHQKKMIQAESNFLPPQINKKMMLTIKEE 775

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              + +K  M+ +  K    ++ L  +  EK   +            +A +L +     L
Sbjct: 776 KPLEVIKFFMNHIFYKYHLEVLFLSYVQPEKIVFLC------QSKTLHAGNLIKEGVS-L 828

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG   +AQ G       ++ +  V + LK
Sbjct: 829 ACGSGGGNASLAQGGTKKTQNLEKMLNFVKNKLK 862


>gi|145640917|ref|ZP_01796499.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274431|gb|EDK14295.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 616

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/642 (41%), Positives = 374/642 (58%), Gaps = 47/642 (7%)

Query: 142 KISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-E 193
           K  G+ A++IIRI  N       DNFW+M +TGPCGPC+EIF+D G+ I GG PGS E +
Sbjct: 13  KEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEED 72

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLI 253
           G+RYIEIWN+VFMQF +        LP+ S+DTGMGLER++ VLQ   +NY+ID+FK LI
Sbjct: 73  GDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGLERISAVLQHVNSNYEIDIFKTLI 132

Query: 254 QASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
             + ++ G     N   + RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ +  
Sbjct: 133 AKTAEIVGATDLSNK--SLRVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHGH 190

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           LLG  E     L+P L   M  A  ++   +  +E+ LR E+E+F +TL+RGL LLD  L
Sbjct: 191 LLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEAL 250

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           + + KD++L+G+VAFKLYDT+G PLD+  D+   R +  ID  +F++ +E QR+RA+A S
Sbjct: 251 AQV-KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNIT-IDEQAFDREMEAQRTRAQAAS 308

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                      + S+    G T+F GY  +                          + + 
Sbjct: 309 Q------FGVDYNSVIRVDGETKFEGYTEVES-----------------------QAKIT 339

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A+   G+ VE   +GQ   V+ + TPFYAE+GGQ+GD+G     G+   + D QK  + +
Sbjct: 340 ALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIGDSGYLSAQGVTFNVKDTQKYGQ-V 398

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F H   + +G L+   S+   +D + R   S+NHSATHLLH AL  ILG HV Q GS ++
Sbjct: 399 FGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSATHLLHAALRQILGLHVVQKGSLVS 458

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
              LRFD    + IT  +L  IE  VN  I  N PV T IM+ + A A GA AL G KY 
Sbjct: 459 DKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGAMALFGEKYG 518

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           D+VRV+++     G  S  LCGG H   TG+I L  I++E+++ AGIRRIEA+TGQ A  
Sbjct: 519 DKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAID 573

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
            L  Q   L   A  LK     +V +      + RK +  + 
Sbjct: 574 WLHNQQRILTQSADLLKSDVNTLVEKSNNFKTKRRKWKKNYK 615


>gi|254470073|ref|ZP_05083477.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960384|gb|EEA95580.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 551

 Score =  647 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/559 (55%), Positives = 400/559 (71%), Gaps = 26/559 (4%)

Query: 37  MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
           MFTN+GMVPFKN+FTG EK  Y   T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNF
Sbjct: 1   MFTNAGMVPFKNVFTGLEKRDYVRATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNF 60

Query: 97  SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156
           SFG YFKE AI+LAW+L+TKE+ L   +L +TVY ED+EAF +WKK++G + +KIIRI T
Sbjct: 61  SFGDYFKENAIELAWNLITKEYGLPADKLLVTVYSEDDEAFNIWKKLTGFADEKIIRIPT 120

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQE 215
           +DNFW+M +TGPCGPCSEIF+D GE I GG PGS E +G+R+IEIWNLVFMQ+EQ   + 
Sbjct: 121 SDNFWAMGDTGPCGPCSEIFYDHGEQIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLADK- 179

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI 275
           R  LP+ SIDTGMGLER A ++Q   NNY+IDLFK LI +SE +TG++  G    +HRVI
Sbjct: 180 RIDLPRPSIDTGMGLERFAAIMQGVHNNYEIDLFKALIASSEHLTGVEAAGKAQASHRVI 239

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335
            DHLRS +FLIADG+LP+NEGRGYVLRRIMRRAM +A LLG  EP++  +LP L  EMG 
Sbjct: 240 ADHLRSMAFLIADGVLPSNEGRGYVLRRIMRRAMRHANLLGAKEPVIFKMLPTLVREMGQ 299

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395
           A+PEL +A+ LIEET++ E++RF KTL+RGL LL+   S LG  + L+G+ AFKLYDT+G
Sbjct: 300 AFPELPRAEKLIEETIQLEEKRFIKTLERGLGLLEDATSSLGSGDQLDGETAFKLYDTYG 359

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            PLD+ QD L  R +A +D   FN A+E QR+ ARA   G G   T+ IWFS+KE+ GAT
Sbjct: 360 FPLDLTQDALRNREIA-VDTDGFNTAMERQRAEARAAWAGSGDAATDAIWFSIKEQAGAT 418

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           +F+GY+                             +V ++V+ GE V+    G++  ++ 
Sbjct: 419 EFLGYET-----------------------EKAEGVVLSLVKDGEEVKVLKQGEEGSLIL 455

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +QTPFY E+GGQ+GD G  + DG+ + +T+ QKKA+G+FVH   VE G +  + +L L +
Sbjct: 456 NQTPFYGESGGQVGDCGTMVADGVSITVTNTQKKADGLFVHSVRVESGDVNVDDALELIV 515

Query: 576 DYQNRRQLSINHSATHLLH 594
           D+  R  +  NHSATHL+H
Sbjct: 516 DHARRSAIRSNHSATHLVH 534


>gi|301115782|ref|XP_002905620.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
 gi|262110409|gb|EEY68461.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4]
          Length = 897

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/922 (33%), Positives = 454/922 (49%), Gaps = 103/922 (11%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEK-- 55
           M ++  + +R+ FL+FF+  GH ++PS+SL+P   D +L+F N+GMVPFK  F G +   
Sbjct: 19  MHSLPSTELRSRFLQFFESQGHRVVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGA 78

Query: 56  --PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
               Y   T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFKE+AI + W  
Sbjct: 79  KARGYSRATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKEQAITMCWRF 138

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           LT+E +L   RL++TV   D+EA +LWK+I+GL   KI  +  +DNFW+M ++GPCGPCS
Sbjct: 139 LTQELELPIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCS 198

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-KQERFILPKMSIDTGMGLER 232
           E+F+D G+ I       ++  ER++E+WNLVFMQF +     E   LP  S+DTGMGLER
Sbjct: 199 EVFWDLGDHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLER 251

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE------------------------GNN 268
           +A+VLQ   +NY  D+F  L+     V                              G  
Sbjct: 252 VASVLQGVPSNYHTDVFVPLLTEVATVLDANRSSTLRQSFTSALQEELDPRKNLFGTGKE 311

Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328
           I   R++ DHLR++  L+ DG+ P+N GRGYVLRRI+RRA+ +A+ LG        L   
Sbjct: 312 IQTLRIVSDHLRATYALLQDGVFPSNIGRGYVLRRIIRRAIRHAQQLGVRSGSDGILASI 371

Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388
                  A          +   + +E+  F + L  G   ++   S      +L+G  AF
Sbjct: 372 AVPGWSEA-----AGLQQMRAIVANEERAFEEMLRNGRGAIEKAFSKT--QVMLSGADAF 424

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           +LYDT G+PLDI Q +   +GL+ +D   ++   +  + +    S+     ++E+   S 
Sbjct: 425 RLYDTFGIPLDITQVLAEEKGLS-VDTEGYDACRKSHKQQTSDRSVFHTQASSEQS-SST 482

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
                 ++F+GY+ L  SK              +D  +G  S                  
Sbjct: 483 PAATVVSEFVGYEQLSVSKAR-----------VLDCWSGSGSA----------------- 514

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               V+ D+ PFY E GGQ+GD G  I +             +  F   + +       E
Sbjct: 515 -GFSVILDRCPFYPEGGGQVGDRGHLINEDAIA--IKCTLPKDTTFEDISAL----FLNE 567

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   +D + R   +++H+ATHLL  AL   LG HV+Q GS +T D LRFD  H   ++
Sbjct: 568 ATVEAHVDRRFRSGCAVHHTATHLLQRALKAELGEHVTQAGSQVTSDRLRFDFAHFGALS 627

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + E+ S+E  VN   A  L V T  + REDA  SGA    G KY D VRVV V  E    
Sbjct: 628 ADEMASVEARVNAFAAAELDVSTVELPREDAERSGAICNFGDKYGDVVRVVRVGGEAETP 687

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            SS  CGGTHV++  EI    +VSE S+ AG RR+EA+ G     +L  + + L  +A  
Sbjct: 688 VSSEFCGGTHVNNVREIFPFAMVSEGSVAAGTRRVEAVAGHAGARYLQAKAQTLSDVADQ 747

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRK----------LQLNVEDLSCHKIADVNFMS 798
           L  +   VV RV ++ ++ ++L+                 L     D        V   +
Sbjct: 748 LSTTPAKVVERVAKMHKQMKQLESRVQALGDVLSTLPSTPLASGAID-GAITAPHVELHA 806

Query: 799 HIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
             +      SK LK   + L ++     +++V +         I    +   + +A  L 
Sbjct: 807 LNVPGGGEFSKVLKRRAEFLAEQASPSSVLVVLLG------CQIACIANAEAKVHAGKLM 860

Query: 857 RLSAKVLGGGGGGGRPHMAQSG 878
           +   K L GG GGG    AQ  
Sbjct: 861 QQVVKSL-GGRGGGNASFAQGS 881


>gi|315929558|gb|EFV08748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 715

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/767 (35%), Positives = 409/767 (53%), Gaps = 56/767 (7%)

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSS 191
           D+EAF LW+K   +  ++I +    DNFW M +TGPCGPCSEIF+DQG E          
Sbjct: 2   DDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFNSSEDYMG 59

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
            +G+R++EIWNLVFMQ+E+        LPK SIDTGMGLER+  + + K +N+D  LF  
Sbjct: 60  GDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNFDSSLFMP 119

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           +I    ++    Y   +  + RVI DH+RSS FL+A G+    EGRGYVLRRI+RRA+ +
Sbjct: 120 IINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRILRRALRH 179

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
             LLG+ +  M  L+  +C  MG  Y  L + K  I+E +R E+ERF  T++ G+ + + 
Sbjct: 180 GYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIENGIEIFNE 239

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            L +    EI +G+VAFKLYDT+G PLD+  D+L  + L  +D   F   + EQ++RA+A
Sbjct: 240 ELKNTK--EIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNEQKARAKA 296

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
              G G  T    + +L EK+G   F+GY                      +     S I
Sbjct: 297 SWKGSGDKTASGDFKNLLEKFGENHFVGY----------------------EKAECESKI 334

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  + +  + V          V+ + TPFYA +GGQ  D+G       + ++ D QK   
Sbjct: 335 LALLDEDFKEVSTLK--DAGWVMLENTPFYATSGGQSADSGFI----AKREVLDTQKFFN 388

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
                    E   L+    +   ID + R Q++ +HSATHLLHHAL  ILGSHVSQ GS 
Sbjct: 389 LNLSFIKAGEE--LKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSHVSQAGSL 446

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  + LRFD TH K +   EL+SIE  VN +I  +   +   M  E+A  SGA AL   K
Sbjct: 447 VESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSGAIALFNEK 506

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y   VRV+++        S  LCGGTHV +T +I   YIV ES + AG+RRIEA+  + A
Sbjct: 507 YQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAVVSKAA 560

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
              +  Q E+L  +   LK +         +I    +KL+      K +L     +    
Sbjct: 561 LEFVKNQLEELSKVKDELKNN---------DILSGIKKLKNEILSLKNELKNSSKTELDS 611

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
            ++  +   +  +D+ ++K+++D  + K    +I+L+ + K++K ++   V +D+     
Sbjct: 612 KNIQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQV-KDEKITLAAGV-KDVP--LK 667

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           A  L + +A++L GG GGGR   A +GG + +K ++A+      ++K
Sbjct: 668 AGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEALKQSLETIEK 713


>gi|205374235|ref|ZP_03227034.1| alanyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 673

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/704 (36%), Positives = 390/704 (55%), Gaps = 43/704 (6%)

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           +F QF          LPK +IDTGMGLERMA V+QE   N++ DLF  +I+  E ++G+ 
Sbjct: 1   MFSQFNHNPDHTYTPLPKKNIDTGMGLERMACVVQEVPTNFETDLFMPIIKEVEGISGVT 60

Query: 264 YE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           Y        + +VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ +A+ +G  +P 
Sbjct: 61  YHPHSEEATSFKVIADHIRTVSFAIGDGALPSNEGRGYVLRRLLRRAVRFAKAIGINDPF 120

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-- 379
           M  L+P +   M   YP + +    I++ +++E++RF +TL+ GL +L  V+ +   +  
Sbjct: 121 MYKLVPVVAEIMVDFYPVVKEKIEFIQKVVKNEEDRFHETLNEGLAILSTVIENAKSEGS 180

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
            ++ G   F+LYDT+G P+++ ++     G+  +D   F   +E+QR RAR     +GS 
Sbjct: 181 TVIPGSDVFRLYDTYGFPVELTEEYAEEAGMT-VDEEGFRHEMEQQRERARNARQDVGSM 239

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             +     L E    + FIGY+ +                        V ++V  ++ + 
Sbjct: 240 KVQG--GVLGEIETNSTFIGYNQM-----------------------SVDTVVTDLIVEE 274

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
               EA  G++++ V  +TPFYAE+GGQ+ D G    +  ++Q+ DV+K   G  VH   
Sbjct: 275 AFSTEANEGKEIQFVLKETPFYAESGGQIADGGIVESENGKIQVLDVKKAPNGQHVHRGR 334

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G ++   S+  TI+   R+Q+  NH+ATHLLH AL  +LG HV+Q GS +  D LRF
Sbjct: 335 VVAGTIKVADSVKATINELARKQIVKNHTATHLLHRALKDVLGEHVNQAGSLVQTDRLRF 394

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +H   +T  EL+ +E +VN+ I + + V  +  + E+A A GA AL G KY D VRVV
Sbjct: 395 DFSHFGQVTKEELEQVERHVNEQIWKGISVDIQSKSIEEAKAMGAMALFGEKYGDVVRVV 454

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           SV     G +S  LCGG HV +T  I L  I SES I AG RRIEA+TG+ A   L  + 
Sbjct: 455 SV-----GDYSIELCGGCHVENTASIGLFKIASESGIGAGTRRIEAVTGEGAYRLLNEKV 509

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADV 794
             L+  +  LK    +++ R++ +  E + +Q  +     +L   +      S   I  V
Sbjct: 510 MMLEEASDRLKTKPDSLLTRIDGLLGELKDVQRENESLNAKLANIEAGSLIDSVESIDGV 569

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAV 853
           N +S  +  VD   L+S+ D L+ KI SG+I+L  +  + K +++  VT+DLLD+ ++A 
Sbjct: 570 NVLSANVQGVDMNSLRSMADDLKTKIHSGVIVLGSVQGD-KVNIIAAVTKDLLDKGYHAG 628

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            L +  A   GGGGG GRP MAQ+GG N  + D A+  V  ++K
Sbjct: 629 KLVKEVASRCGGGGG-GRPDMAQAGGKNPAQLDDALKFVYEWVK 671


>gi|324507432|gb|ADY43152.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 693

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/698 (33%), Positives = 349/698 (50%), Gaps = 39/698 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
           +   + +R+ F+ FF    H  + SSS+IP  DPTL+F N+GM  FK IF G   P    
Sbjct: 4   VLTANEVRSAFINFFANREHTYVHSSSVIPFEDPTLLFANAGMNQFKPIFLGTVDPSSEL 63

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT
Sbjct: 64  GRLRRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCNWAWELLT 123

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           KE  +   +LY++ +  DE        E  ++W  I GL   +++     DNFW M + G
Sbjct: 124 KELGIPADQLYVSYFGGDEKAGLAPDDECRQIWLDI-GLPESRVLPFGMKDNFWEMGDVG 182

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI FD+           + +    +EIWNLVFMQ+ ++       LP   ID G
Sbjct: 183 PCGPCSEIHFDRV-GNRDASALVNADDPMVVEIWNLVFMQYNREEGGVLRELPMRHIDCG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDH 278
           +GLER+  V+Q KT+NYD D F  +  A +            G        + +RV+ DH
Sbjct: 242 LGLERLVAVMQNKTSNYDTDAFTPIFDAIQASVCVRAYSGKVGAADSDGIDMAYRVVSDH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+    ++DG  P + GRGYVLRRI+RR + YA   LG        L+P +   +G  +
Sbjct: 302 IRTLCVALSDGGRPDSTGRGYVLRRILRRGVRYANEKLGAPPGFFASLVPVVVRLLGDTF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGL 396
           PEL +    + + +  E+ +F KTL RG  L    ++ L  + +   GD+A++LYDT+G 
Sbjct: 362 PELRKDPETVMDIINDEEAQFLKTLSRGRSLFQKAVAALESEAKQFPGDIAWRLYDTYGF 421

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   + L+ +D+ +F Q     R +A   S    +   +     +       +
Sbjct: 422 PVDLTQLMAEEKQLS-VDMDAFEQC----RQKAVEMSSAGANKFRDTAELDVH-GIAKLK 475

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S                         V A++++G  V+   SG K  V+ D
Sbjct: 476 KDGVPSTDDSPKYDYSAVGPNDITAKYSFAKCEGQVLALLKEGTFVDSLYSGDKGAVILD 535

Query: 517 QTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +T FYAE GGQ+ DTG       +G   ++++VQ +  G  V    VE G +     L+ 
Sbjct: 536 RTNFYAEQGGQIYDTGVLTKIGDEGAEFEVSNVQMR-GGYVVLVGSVE-GNISIGDRLLQ 593

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID + R  +  NH+ TH+L+ AL  +LG  V Q GS + PD +RFD +    +TSA+++
Sbjct: 594 AIDEERRSLIMKNHTGTHVLNFALRRVLGD-VEQKGSLVAPDKMRFDFSAKHALTSAQVR 652

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670
             E+    +I  +  V  +     +A    G  A+   
Sbjct: 653 EAEELAQGMIETHAAVFAKDAPLAEAREVKGLRAVFDE 690


>gi|153810792|ref|ZP_01963460.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174]
 gi|149833188|gb|EDM88270.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174]
          Length = 683

 Score =  645 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/711 (37%), Positives = 386/711 (54%), Gaps = 41/711 (5%)

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +E+WN VF QFE         L + +IDTGMGLER+A V+Q+  + +D+D    L     
Sbjct: 1   MEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVDSIFDVDTICALRNLVC 60

Query: 258 QVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
           ++ G +Y  N  + V+ R+I DH+RS++F+I+DGI+P NEGRGYVLRR++RRA  + RLL
Sbjct: 61  EIAGKEYGKNYQDDVSIRLITDHIRSATFMISDGIMPTNEGRGYVLRRLIRRAARHGRLL 120

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G     +  L   +     + YPEL + K  I + L +E+ +F KT+D+GL +L  +   
Sbjct: 121 GIEGSFLAKLSAEVINGSKAGYPELEEKKEFIFKVLTNEENQFNKTIDQGLRILGDMEEE 180

Query: 376 LG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           +    ++ L+G+ AFKLYDT+G PLD+ ++IL  +G  GID   F +A+EEQR +AR   
Sbjct: 181 IKAAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEGFQKAMEEQRVKARTAR 239

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                   +   +   +    T+F GYD L                          S + 
Sbjct: 240 EVTNYMGADATVYDEIDVNVTTKFEGYDHLTYD-----------------------SEIT 276

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            +  + EIV   V GQK  V   +TPFYA  GGQ GD G       +  + D  K   G 
Sbjct: 277 VLTTEKEIVTSLVEGQKGTVFVKETPFYATMGGQEGDCGVIETANGKFVVEDTIKLRGGK 336

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F H   +E G+L T  ++ L ++ Q RR    NHSATHLL  AL T+LGSHV Q GS +T
Sbjct: 337 FGHVGRMESGMLSTGETVTLKVNEQARRDTEKNHSATHLLQKALKTVLGSHVEQKGSLVT 396

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           PD LRFD  H + +T  E+   E  VN  I   LPVVT +M+ E+A  SGA AL G KY+
Sbjct: 397 PDRLRFDFAHFQAMTPEEIAQTETLVNKEIQAALPVVTDVMDIEEAKKSGAMALFGEKYD 456

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
            +VRVVS+     G  S  LCGGTHV +T  IML  IVSE+ I AG+RRIEA+TG     
Sbjct: 457 QKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVSEAGIAAGVRRIEALTGNGVIE 511

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SC 788
           +   Q+  L+ +A  LK     +  ++  +  E + LQ  +   K +L    L       
Sbjct: 512 YYKKQETMLQEVAKALKAQPAEITEKITHLQAEVKSLQSENESLKSKLAQGSLGDVMNQI 571

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +  V  ++  +  VD   L+ + D L++KI  G+++L  +    K ++L + T+    
Sbjct: 572 VDVKGVKLLAAKVEGVDMNGLRDLGDQLKEKIGEGVVVLAAV-NGGKVNLLAMATDAAQK 630

Query: 849 -RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              +A +L +  A ++GGGGG GRP+MAQ+GG N  KAD+A+   A  L++
Sbjct: 631 AGAHAGNLIKGVAAIVGGGGG-GRPNMAQAGGKNPEKADEAVKAAAGILEQ 680


>gi|258575517|ref|XP_002541940.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704]
 gi|237902206|gb|EEP76607.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704]
          Length = 931

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/950 (28%), Positives = 445/950 (46%), Gaps = 137/950 (14%)

Query: 23  LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAVTTVQKCVRAGGKHNDL 77
           +PSSS++P +DPTL+F N+GM  +K+IF G   P       +     QKC+RAGGKHNDL
Sbjct: 42  VPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAHLKRAHNSQKCIRAGGKHNDL 101

Query: 78  DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--- 134
           D+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +WDLLTK + L+  RLY+T ++ ++   
Sbjct: 102 DDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTKVYGLEPDRLYVTYFEGNKDAG 161

Query: 135 -----EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG 189
                E   LW  + G+  D I+     DNFW M + GPCGPCSE+ +D+          
Sbjct: 162 IEPDLETKDLWLGV-GVKEDHILSGNMKDNFWEMGDQGPCGPCSEVHYDRIGGRNAAH-L 219

Query: 190 SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
            + +    +EIWN VF+Q+ +++++    LP   +DTG+G ER+ +VLQ+K++NYD D+F
Sbjct: 220 VNMDDPNVLEIWNNVFIQYNRESEKILRPLPNKHVDTGLGYERLVSVLQDKSSNYDTDVF 279

Query: 250 KHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
             L     ++TG++                 +RV+ DH+R+ +F I+DG  P NEGRGY 
Sbjct: 280 SPLFDVIREITGVRPYAGKFGEEDVDGIDTAYRVVADHVRTLTFAISDGAAPNNEGRGY- 338

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
                                       + T+MG  +PE+ + +  + E L  E+  F K
Sbjct: 339 ----------------------------VWTQMGDMFPEIKKKQTDVMEILDEEEISFAK 370

Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLDRG    +       +     L+G   ++LYDT G P+D+ Q +   RGL+ ID   F
Sbjct: 371 TLDRGERQFEIYAQQAKESGSGKLHGADVWRLYDTFGFPVDLTQLMAEERGLS-IDNTEF 429

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
            +A    R +A+  S G     ++ +  ++ +                  +++D      
Sbjct: 430 EEA----RLKAKEASKGQAKAASDLLKLTVHDLGK---------------LEKDNVPKTD 470

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                    + S + +I    E V       +G+++ ++ D+T FYAE GGQ  D G  I
Sbjct: 471 DSAKFGRGNIQSQILSIYHGKEFVASTNGISAGEQIGIILDKTNFYAEQGGQEYDIGKII 530

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM---SLVLTIDYQNRRQLSINHSATHL 592
            DG R             FV +A   R + +         L +    R ++S NH+ TH+
Sbjct: 531 VDGHRGVTFQFGVPFLRPFVFYAKQARQLPQATDGKLQERLLLTRPQRHEVSNNHTGTHI 590

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL  +LG+ + Q GS +  + LRFD +H   I+ ++L+ IE    + I QN  V ++
Sbjct: 591 LNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTEYIRQNCAVYSQ 650

Query: 653 IMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVS 700
            +    A    G  A+ G  Y D VRVVSV  E   +            S   CGGTHV 
Sbjct: 651 DVPLAKAREITGVRAVFGETYPDPVRVVSVGVELDEILKDVKDPRWKGVSIEFCGGTHVQ 710

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM---------------------GQD 739
            TG+I  L I+ ES I  GIRRI A+TG+ A                           Q+
Sbjct: 711 KTGDIKDLVILEESGIAKGIRRIIAVTGKDAHEVQRIAREFGERLNKFEKMEQGPQKEQE 770

Query: 740 EKLKS-------LASFLKVSQGNVVGRV-EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            KL         +++  K    +   R+ +++ +  + LQ    K  L          + 
Sbjct: 771 AKLVQVDLNQLSISAVEKARFRDQFARIHKQVLDAQKALQKQEIKAALDTINSHFEKPEN 830

Query: 792 ADVNFMSHII-SEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDL-LD 848
            D +F+   + +  ++K +   ++ ++ K++   + +     ++ + +    V+  L   
Sbjct: 831 KDTSFLVVRLPTSANAKAISESINHVKSKLKDKSLYVFAADEQQGRVAHGCYVSSSLSAQ 890

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             +A   + + + ++GG             G +  K D+A+     +L++
Sbjct: 891 GASASSWSGVVSAIVGG------------NGTDVGKVDEALDAATKYLEQ 928


>gi|262341353|ref|YP_003284208.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272690|gb|ACY40598.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 887

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/927 (32%), Positives = 484/927 (52%), Gaps = 78/927 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               SIR TFL FF+K  H+++PS  +   NDP+L F N+GM PFK+ F G  +P Y  +
Sbjct: 1   MKYKSIRDTFLGFFKKKEHKVIPSFPIHSKNDPSLFFINAGMNPFKDYFLGHIQPDYSRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQKC+R  GKHNDL++VG  N HHT FEMLGN+SFG Y ++  I+ AW+LL + +++ 
Sbjct: 61  VNVQKCLRVTGKHNDLEHVGYDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLIQVYNIP 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           ++ +YI+V+  D+        E FK WK +  +S + I+     +NFW M  TGPCGPCS
Sbjct: 121 KKNIYISVFIGDKKEGLSMDYETFKYWKTL--ISEENILFFGKKENFWEMGLTGPCGPCS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + + +  G    +++  + IEIWNLVF++F +++  +   L K  +DTGMG
Sbjct: 179 EIHIDLRNEKEKQMLSGKHLVNKKHPKVIEIWNLVFIEFLRKSDGKLEKLTKKHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287
           LER+  +LQEK ++Y+ D+F  +IQ  ++  G  Y+ +    V+  +I DHLR+  F I+
Sbjct: 239 LERLCMILQEKFSSYETDIFFPIIQNIKESLGKIYKEDFHQKVSIHIIADHLRAIVFSIS 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG+ P+N G GYV+RRI+RRA+ YA R L   EP +   + +L  EM S +PEL++ K  
Sbjct: 299 DGVFPSNNGAGYVIRRILRRAIIYATRFLYKKEPFIYQFVDSLVKEMKSYFPELMEKKEY 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+  ++ E+  F K +++G   +  ++    K  ++I++G   FKLYDT+G P+ +   +
Sbjct: 359 IKNVIQEEELSFLKVIEKGNHKIQYIIEKAKKQNEKIIDGTTIFKLYDTYGYPIKL-SKM 417

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK---YGATQFIGYD 461
           L  +    ID   F++ L EQ++R++  +  +      K W  +      +    F+GYD
Sbjct: 418 LVEKNNLLIDEKLFHEKLLEQKNRSKKENHTIEK----KDWIEVHNHQFIHENVNFVGYD 473

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
           +++    + + RKV  +                                 E+VF +TPFY
Sbjct: 474 MIKCDVLILKYRKVENKLEKTHY--------------------------YELVFSKTPFY 507

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            E GGQLGDTG    +   + I + +K+   I +H A  ++       S    +D   R 
Sbjct: 508 PEGGGQLGDTGFIKNETDEVYIFNTKKE-NSIIIHSA--KKLPSDVFSSFKAIVDKNRRL 564

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++  NH++THLLH +L  ILG+H+ Q GS +  D LRFD +H + IT  EL  IE+ V +
Sbjct: 565 EIEKNHTSTHLLHFSLKKILGNHIQQKGSYVGEDYLRFDFSHYQKITVEELYKIENLVQE 624

Query: 642 IIAQNLPVVT-RIMNREDAIAS---GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           +I  +L +   R  + ++A  +     +     KY   VRV++         SS LC GT
Sbjct: 625 LIFSDLILEEKRFSSLQEAEKNISFYKSETFENKYKQEVRVITFGK------SSELCIGT 678

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  TG I +  I+SESSI  GIRRI+AIT ++A  +L    ++ +S    +K    +  
Sbjct: 679 HVKHTGLIQIFKIISESSISYGIRRIKAITSKKAVQYLKSIHDQYQSFKKMMKY-PESPF 737

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNV-----EDLSCHKIADVNFMSHII--SEVDSKELK 810
                + +E ++L+   ++ +LQ  +       L   + + +N++  I    E D   +K
Sbjct: 738 KSFLILQKENQELKKKISEIRLQQMITLKKEYSLKAIQFSSINYICDIDLSKEKDINLIK 797

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
            ++  L+ +I S + M+VG  KE K    + I  +       +A  +       + G   
Sbjct: 798 KIVLDLRNEI-SNLFMIVGFIKENKPVIFISISDSIIQSKNIHAHKIICKMTSYIHGKYW 856

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASF 895
           G +   A + G   N     +    + 
Sbjct: 857 G-KSFFATAIGTEKNGLSLVLKDAIAI 882


>gi|171920911|ref|ZP_02932062.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554598|ref|YP_002284771.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|171903130|gb|EDT49419.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542099|gb|ACI60328.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
          Length = 906

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVGN-GPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAK- 344
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 345 -LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   R +  +D+ +F+   +  +  ++A+   L    ++    SL +    + F      
Sbjct: 415 ICEQRNVK-VDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTF------ 465

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                              ++    ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 466 -----------------HYEIFKWENAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQD-EKLKSLASF---------- 748
            T EI  + IV  +S  AG  RI  +TG      ++     E L  +             
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 749 -------------LKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIAD 793
                        L +   +++  +  E+ +     ++   K+  +  + D+ +      
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNL-DENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|225550618|ref|ZP_03771567.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379772|gb|EEH02134.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 906

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/945 (29%), Positives = 462/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVGN-GPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAK- 344
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 345 -LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   R +  +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 415 ICEQRNVK-VDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        + I+    +  E+V+     +   VVFD T FYA 
Sbjct: 471 RWEN---------------------AKIITLFNEDFELVDGL-DHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GA A     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAVAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQD-EKLKSLASF---------- 748
            T EI  + IV  +S  AG  RI  +TG      ++     E L  +             
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 749 -------------LKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIAD 793
                        L +   +++  +  E+ +     ++   K+  +  + D+ +      
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNL-DENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|188024171|ref|ZP_02996895.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518577|ref|ZP_03004033.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524540|ref|ZP_03004530.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198273661|ref|ZP_03206196.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551130|ref|ZP_03772076.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|188018805|gb|EDU56845.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997839|gb|EDU66936.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659576|gb|EDX52956.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|198249689|gb|EDY74470.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378945|gb|EEH01310.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 906

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVGN-GPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAK- 344
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 345 -LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   R +  +D+ +F+   +  +  ++A+   L    ++    SL +    + F      
Sbjct: 415 ICEQRNVK-VDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTF------ 465

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                              ++    ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 466 -----------------HYEIFKWENAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQD-EKLKSLASF---------- 748
            T EI  + IV  +S  AG  RI  +TG      ++     E L  +             
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 749 -------------LKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIAD 793
                        L +   +++  +  E+ +     ++   K+  +  + D+ +      
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNL-DENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|195867853|ref|ZP_03079852.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|195660430|gb|EDX53688.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
          Length = 906

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/945 (29%), Positives = 463/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVGN-GPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAK- 344
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKT 358

Query: 345 -LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   R +  +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 415 ICEQRNVK-VDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        + I+    +  E+V+     +   VVFD T FYA 
Sbjct: 471 RWEN---------------------AKIITLFNEDFELVDGL-DHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQD-EKLKSLASF---------- 748
            T EI  + IV  +S  AG  RI  +TG      ++     E L  +             
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 749 -------------LKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIAD 793
                        L +   +++  +  E+ +     ++   K+  +  + D+ +      
Sbjct: 741 LNDLYNAFANWKNLSIEDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNL-DENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|185178972|ref|ZP_02964729.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|184209253|gb|EDU06296.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
          Length = 906

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/945 (28%), Positives = 460/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+  +  W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVGN-GPCGPCTEIHYDRGEH 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAK- 344
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + M   Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMSDFYTYLKDEKT 358

Query: 345 -LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I+  L  E + F KTL  GL + +  +     ++ L+ D+ FKL DT+G P++++++
Sbjct: 359 LAKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   R +  +D+ +F+   +  +  ++A+   L    ++    SL +    + F      
Sbjct: 415 ICEQRNVK-VDLEAFDAMFKHHQLVSKANKANLKVMESQN--ESLMQLDVDSTF------ 465

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                              ++    ++ +  +  +   + + +  +   VVFD T FYA 
Sbjct: 466 -----------------HYEIFKWENAKIITLFNEDFELVDGLDHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQD-EKLKSLASF---------- 748
            T EI  + IV  +S  AG  RI  +TG      ++     E L  +             
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDHK 740

Query: 749 -------------LKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIAD 793
                        L +   +++  +  E+ +     ++   K+  +  + D+ +      
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQNAKQAIIDIKNTFNAQQ 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q+ + +   +  E K   L+ + E     ++ N
Sbjct: 801 TNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNL-DENKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  +  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903


>gi|313678597|ref|YP_004056337.1| alanine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950312|gb|ADR24907.1| alanine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 880

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/919 (30%), Positives = 451/919 (49%), Gaps = 106/919 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+   H ++ S SLIP NDP+L++ NSG+   KN F+G++ P    +T
Sbjct: 5   TSTEIRQKWLDFFESKNHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPAFRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    ++D 
Sbjct: 65  NSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVLEMDF 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D+GE 
Sbjct: 121 EKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYDRGEK 178

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+
Sbjct: 179 YDSRGIDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLASIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLIAD 288
              NYD DLF ++I+  E+ +  KY   N             N ++I DH+R+    IAD
Sbjct: 239 VPTNYDSDLFINIIREIEKYSRYKYIIENYFVKDEHQSEINTNFKIIADHIRTVVNAIAD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E       + 
Sbjct: 299 GAKVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYDE-----KDVI 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+  F KT+++G +LL+  L +  ++++ +G VAF L +T+G P+++  +IL  +
Sbjct: 354 DAIKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEILHQK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSK 467
           G+  +D+ +F  A    + +    S G  +   +K+  SL         F+GY  L    
Sbjct: 412 GIR-VDMEAFELA----KEKHALASKGGKATGMDKVINSLALIDKKMDNFVGYSEL---- 462

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                SS V  +  +   VE   +G    V+ + TPFYA +GGQ
Sbjct: 463 -------------------SASSKVLKLFDEENEVESFETG--GYVLLETTPFYATSGGQ 501

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I    +++I DV K   G  +H      G +     +   +D   R  L  NH
Sbjct: 502 RHDKGFIIQGENKIKIIDVFKDKFGNHIHFV---EGKMNNYEPVSSFVDPNIRIGLERNH 558

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K+IED V   I +++
Sbjct: 559 SGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAIEDLVRSYITKSI 618

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                    + A   GA   L   +Y D   V  V +   G  +S LCGGTH+S+T ++ 
Sbjct: 619 DREYITTTVDKAREMGAIMTLEEGEYMDPRAVRVVRF---GDITSDLCGGTHLSNTSKLE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-- 764
              I +    +AG+ RI      RA S +   +E L  +   L      ++ +++E+   
Sbjct: 676 SFKITNVEKKQAGVFRI------RAISSIKLVNEYLSEVNKKLNEELATIIKKIKELKND 729

Query: 765 ------------------------EEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
                                   +E R+   QL+     L+ + E +   KI + +   
Sbjct: 730 YVAPVINENEPDIETLNLSINKRIDELREVYKQLLKESSNLEFDYETVKFDKINNYDVYI 789

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           ++  +VD+  +K +  +++ K QSG  + +  SK +K  +L + T       +A  + + 
Sbjct: 790 NL--DVDASSVKLIAASIRDKFQSGKTVAIIGSKNEKELLLAIATRA----IDANKMFKK 843

Query: 859 SAKVLGGGGGGGRPHMAQS 877
            +  L  G GGG P +A  
Sbjct: 844 LSSELN-GRGGGAPILAMG 861


>gi|281345697|gb|EFB21281.1| hypothetical protein PANDA_002397 [Ailuropoda melanoleuca]
          Length = 974

 Score =  640 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/951 (29%), Positives = 437/951 (45%), Gaps = 79/951 (8%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             ++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      
Sbjct: 39  ARAVRDAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEMAG 98

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 99  FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 158

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +        D D E+  +W  + G+    ++     +NFW M +TGP
Sbjct: 159 VYGIPEDRLWVSYFGGDPKAGLDPDLESRDIWLSL-GVRDSHVLSFGPEENFWEMGDTGP 217

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D    +            + +E+WNLVF+Q  ++       LP+  +DTGM
Sbjct: 218 CGPCTEIHYDLAGRVGA---------PQLVELWNLVFIQHNREADGSLQPLPQRHVDTGM 268

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHL 279
           GLER+  VLQ   + YD DLF  L++A  Q           G   EG   + +RV+ DH+
Sbjct: 269 GLERLVAVLQGTRSTYDTDLFSPLLKAIHQGCRAPPYLGRVGAADEGRTDMAYRVVADHI 328

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLRRI+RRA+ ++  +L      +  L+P +   +G AYP
Sbjct: 329 RTLSVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 388

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGL 396
           EL +    I   +  ++  F  +L RG  ++D  L  LG  E+   +VA+ L      GL
Sbjct: 389 ELQKNSAQIAHLVSEDEAAFLASLQRGRQIIDRTLRRLGPSELFPAEVAWSLSLAGNLGL 448

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+++ +L  +G+  +D     +  +E+      H         E+         G  Q
Sbjct: 449 PLDLLELMLEEKGV-QLDSAGLARLAQEEAQ----HRSQQSEPVQEQGLQLNVHALGELQ 503

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S    +    L      + +   + +++   + G  V     GQ+  ++ D
Sbjct: 504 RRGVPPTDDS---PKYNYSLRPSGGYEFSACEAQVLQLYTEDGTAVASVGKGQRCGLLLD 560

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  +  G    +  V Q +  G F+ H  V    L+    + L +
Sbjct: 561 KTNFYAEQGGQASDRGYLVRVGQEDVLFPVAQAQVCGGFILHEAVAPEGLKVGDQVQLHV 620

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R +    H+ATHLL  AL   LG H  Q GS ++P+ LRFDV    P+T  +L+++
Sbjct: 621 DEAWRLRCMEKHTATHLLSWALRQTLGPHTEQRGSHLSPERLRFDVATQAPLTPEQLRAV 680

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYED 685
           E  V D + Q+ PV    +             L   Y D V          R +    + 
Sbjct: 681 EGTVQDAVGQDEPVYMEDVALALTAHVPGLRSLDEVYPDPVRVVSVGVPVARALDPASQA 740

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKL 742
               S  LC GTH+  TG +  L IV E  +  G  R+ A+TG   Q+AR       +++
Sbjct: 741 ALRTSVELCCGTHLLRTGAVGDLVIVGERQLTKGTTRLLAVTGEQAQQAREVGQNLAQEV 800

Query: 743 KSLASFLKVSQGNVVGR------VEEIWE----------EYRKLQ--LIHAKRKLQLNVE 784
           ++    L     +V         V  + +          + R+LQ  L   +R+    + 
Sbjct: 801 EAATERLSRGSQDVAAAQRLSKDVGRLTDAVDTALMPQWQRRELQAALKALQRRANAAIR 860

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            L   + A             S+ L  V+  L ++     ++L+             V +
Sbjct: 861 KLELGQAAGNPERGAATVCPPSQVLVKVVRQLCERAPGTSVLLLSPQPRGHVLCACQVAQ 920

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                F A   A      +GG   G R  +AQ  G   +    A++   ++
Sbjct: 921 SATPAFTAEAWALAVCSPMGGKAWGSR-VVAQGTGTTAD-LGAALSTARAY 969


>gi|13357929|ref|NP_078203.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762259|ref|YP_001752452.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920314|ref|ZP_02931660.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508708|ref|ZP_02958194.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|81624421|sp|Q9PQC2|SYA_UREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830281|sp|B1AJ08|SYA_UREP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|11271362|pir||D82899 alanyl-tRNA synthetase UU369 [imported] - Ureaplasma urealyticum
 gi|6899351|gb|AAF30778.1|AE002134_2 alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827836|gb|ACA33098.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902731|gb|EDT49020.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675631|gb|EDT87536.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
          Length = 906

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/945 (28%), Positives = 461/945 (48%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+     W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVGN-GPCGPCTEIHYDRGER 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAK- 344
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKT 358

Query: 345 -LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I+  L  E + F KTL  GL + +  +     ++ L+ ++ FKL DT+G P++++++
Sbjct: 359 LTKIKMILNKEVQLFEKTLQLGLNIFENSIR----NQELDKEITFKLVDTYGFPIELIKE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   R +  +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 415 ICEQRNVK-VDLEAFDAMFKHHQLISKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        + I+    +  E+V+     +   VVFD T FYA 
Sbjct: 471 RWEN---------------------AKIITLFNEDFELVDGL-DHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEHVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQD-EKLKSLASF---------- 748
            T EI  + IV  +S  AG  RI  +TG      ++     + L  +             
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDHK 740

Query: 749 -------------LKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIAD 793
                        L +   +++  +  E+ +     ++   K+  +  + D+ +      
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQNAKQAIIDIKNTFNTQL 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFN 851
            N   H+    D+K + + ++ L  + Q  + +   +  + K   L+ + E     ++ N
Sbjct: 801 TNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNL-DDNKIQYLLAINEKFATTNQIN 859

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                +     +  G GGG+P+  Q G     K D+ +  V  ++
Sbjct: 860 LNKYIKEL-NTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903


>gi|186701671|ref|ZP_02971369.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|186700919|gb|EDU19201.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 906

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/945 (29%), Positives = 464/945 (49%), Gaps = 97/945 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  ++EFF+   H  +   SLIP NDPTL++ NSG+   K+ F+G+ KP ++ + 
Sbjct: 5   STNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI  A++ L     +D 
Sbjct: 65  NSQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDV 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++L++TV+++D+     W K+ G+  ++II+   + NFW +   GPCGPC+EI +D+GE 
Sbjct: 121 KKLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVGN-GPCGPCTEIHYDRGER 178

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 GS       E +RY+EIWN+VF QF          L + +IDTG GLER+A + 
Sbjct: 179 FDPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACIS 238

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  + ++ EQ +  KY+ N               ++VI DH+R++ F I
Sbjct: 239 QDVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAI 298

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAK- 344
           ADG +P+N+ RGY+LRR++RR M   R L     L +  ++ A+ + MG  Y  L   K 
Sbjct: 299 ADGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKT 358

Query: 345 -LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I+  L  E + F KTL  GL + +  +     ++ L+ ++ FKL DT+G P++++++
Sbjct: 359 LTKIKMILNKEVQLFEKTLQLGLNIFENSIR----NQELDKEITFKLVDTYGFPIELIKE 414

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           I   R +  +D+ +F+   +  +  ++A+   L    ++    SL +    + F  Y++ 
Sbjct: 415 ICEQRNVK-VDLEAFDAMFKHHQLISKANKANLKVMESQN--ESLMQLDVDSTFH-YEIF 470

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
           R                        + I+    +  E+V+     +   VVFD T FYA 
Sbjct: 471 RWEN---------------------AKIITLFNEDFELVDGL-DHEDGYVVFDNTCFYAT 508

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ  DTG  I +  +  + DV K      VHH  V+   L     ++L I+ Q+R+ +
Sbjct: 509 SGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEHVILQINEQDRKSI 566

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+A HLLH+ L  +L   + Q G+   P  + FD T+    T A+L  +E+ +N+++
Sbjct: 567 TANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEMV 626

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             N  V    M+ ++A A GAAA     Y     ++RV+ +        S  LCGGTH  
Sbjct: 627 QSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKMGP------SIELCGGTHAH 680

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQD-EKLKSLASF---------- 748
            T EI  + IV  +S  AG  RI  +TG      ++     + L  +             
Sbjct: 681 HTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDHK 740

Query: 749 -------------LKVSQGNVV-GRVEEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIAD 793
                        L +   +++  +  E+ +     ++   K+  +  + D+ +      
Sbjct: 741 LNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQNAKQAIIDIKNTFNTQL 800

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
            N   H+    D+K + + ++ L  + Q  + +   +  + K   L+ + E      N +
Sbjct: 801 TNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNL-DDNKIQYLLAINEKFAT-INQI 858

Query: 854 DLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +L +   ++  +  G GGG+P+  Q G     K D+ +  V  ++
Sbjct: 859 NLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903


>gi|291320346|ref|YP_003515608.1| alanyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752679|emb|CBH40652.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma
           agalactiae]
          Length = 880

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/914 (31%), Positives = 455/914 (49%), Gaps = 96/914 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+   H ++ S SLIP NDP+L++ NSG+   KN F+G++ P    +T
Sbjct: 5   TSTEIRQKWLDFFKSKDHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPAFRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    ++D 
Sbjct: 65  NSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAFAKEFLVNVLEMDL 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T Y+ED EA   W + +G+    +I  T + NFW +  +GPCGPC+EIF+D+GE 
Sbjct: 121 EKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTKDTNFWDLG-SGPCGPCTEIFYDRGEK 178

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+
Sbjct: 179 YDSRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYIELKQKNIDTGAGLERLASIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLIAD 288
              NYD DLF ++I+  E+ +  KY   N             N ++I DH+R+    IAD
Sbjct: 239 VPTNYDSDLFINIIREIEKYSPYKYVIENYFVKDAEQNEINTNFKIIADHIRTVVNAIAD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y E       + 
Sbjct: 299 GAKISNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVHVVKASLPYEYDE-----KDVI 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E ++ E+  F KT+++G VLL+  L    K +I +G VAF L +T+G P+++  +IL  +
Sbjct: 354 EQIKEEELLFSKTIEKGKVLLESFLD--SKSKIFDGAVAFNLLETYGFPIELTAEILHQK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSK 467
           G++ +D+ +F  A    + +    S G  +   +K+  SL         F+GY  L    
Sbjct: 412 GIS-VDMDAFELA----KEKHALASKGGKASGMDKVINSLALIDKKMDNFVGYSELN--- 463

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                ++ V  ++ +   VE   +G    V+ + TPFYA +GGQ
Sbjct: 464 --------------------ATTKVLKLLDEENEVEAFETG--GYVLLETTPFYATSGGQ 501

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I    +++I DV K   G  +H      G +    S+   +D   R  L  NH
Sbjct: 502 RHDKGFIIQGENKIKIVDVFKDKFGNHIHFV---EGKMNIHESVSCYVDPTIRIGLERNH 558

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K++ED V   I++++
Sbjct: 559 SGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYISKSI 618

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                I   + A   GA   L   +Y D   +  V +   G  +S LCGGTH+S+T ++ 
Sbjct: 619 DREYIITTVDKAKEMGAIMTLEEGEYMDPRAIRVVRF---GDITSDLCGGTHLSNTSKLE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLK-SLASFLK-------------- 750
              I +    +AG+ RI AI+  +    +L   ++KL   LA+ +K              
Sbjct: 676 NFKITNVEKKQAGVFRIRAISSSKLVNEYLTDVNKKLNDELATIIKKIKELKSDYSAPVV 735

Query: 751 ----VSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
                    +   + +I EE R+   QL+     ++ + E +   KI D +   ++  E 
Sbjct: 736 NENESDIETLNANIIKIIEECREAYKQLLKDHSNVEFDYETVKFVKINDFDVYINL--EA 793

Query: 805 DSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           D+ ++K +  +++ K QSG  I +VG   E +  + I          +A  + +  A  L
Sbjct: 794 DASDVKVIAASVRDKFQSGKTIAIVGSRNENELLLAIA-----TRVIDANKMFKKIASEL 848

Query: 864 GGGGGGGRPHMAQS 877
             G GGG P +A  
Sbjct: 849 -DGRGGGAPILAMG 861


>gi|291533808|emb|CBL06921.1| alanyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 637

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 250/668 (37%), Positives = 376/668 (56%), Gaps = 43/668 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   +R  +L+FF KNGH  LPS+SLIP +DP+L+   +GM PFK  FTG+  P    +
Sbjct: 1   MSGKELRRRYLDFFVKNGHLELPSASLIPKDDPSLLMIGAGMAPFKAYFTGKMTPPCTRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT Q+CVR G    D++NVGRT RHHT+FEMLGNFSFG YFK  AI+ AW+ LT E +L 
Sbjct: 61  TTSQRCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKYDAIKWAWEFLTGELELP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ T+Y +DEEA+K+W   + ++ + I+++   DNFW +   GPCGP SEIF D GE
Sbjct: 117 KDKLWATIYPDDEEAYKIWTTETDINPEHIVKL--EDNFWEIGS-GPCGPDSEIFIDLGE 173

Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P  G   + +RY+EIWNLVF QF++    +   L   +IDTG GLER+A+VLQ 
Sbjct: 174 ERGCGSPTCGVGCDCDRYLEIWNLVFTQFDRTEDGKYNPLVHKNIDTGCGLERLASVLQN 233

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297
           K +N++ DL   +I+ + +V   +Y  +    ++ +VI DH RS SF++ DGILP+NEGR
Sbjct: 234 KPSNFETDLMFPIIEYASKVANKEYGKDKETDISLKVIADHARSISFMVMDGILPSNEGR 293

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYVLRR++RRA+ +AR+LG  +  +   +  +       Y EL   K  I++ +  E++R
Sbjct: 294 GYVLRRLLRRAVRHARMLGIEDKFLAGAVDVVDEIYSGVYDELTNRKDYIKKVISLEEDR 353

Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           F  TL +G+ LL+  +  L      +L+G+V FKLYDT+G P ++  +IL    +  +D 
Sbjct: 354 FATTLTQGMDLLNAEVEKLKAENKTVLDGEVGFKLYDTYGFPWELTDEILHENHMT-LDK 412

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F++A++EQR+RAR             +  S   +    +                   
Sbjct: 413 EAFDKAMDEQRTRARNARGENKRMDIPDLRDSNIGELKVDE------------------- 453

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + +  I +  +       G +  ++ D TPFYAE GGQ GD G   
Sbjct: 454 ----------TARQAKIVCIWKDAKTTNSLEDGDEAGLILDVTPFYAEGGGQEGDIGSLK 503

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            D    Q+ D +K  +G   +   V  G L    ++ +T+D +N+   + NH+ATHLL  
Sbjct: 504 TDMGNAQVIDTKKLPDGSVYNIVHVTEGSLHVGDTVEITVDMKNKLASARNHTATHLLQA 563

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  ++G H++Q GS +    LRFD +  +PI++ +L+ +E+ VN  I     V    MN
Sbjct: 564 ALKRVVGDHINQAGSAVNAHHLRFDFSSFEPISAEQLQQVEEMVNAEILTGKDVEISHMN 623

Query: 656 REDAIASG 663
           +EDA  S 
Sbjct: 624 QEDAKKSW 631


>gi|315453099|ref|YP_004073369.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132151|emb|CBY82779.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 872

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 302/917 (32%), Positives = 458/917 (49%), Gaps = 82/917 (8%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I+  FL+ F++  H  +PSSSL+P +D +L+FTN+GMV FK+IF G+  P     T+ Q
Sbjct: 2   DIKNAFLQHFERLNHVRVPSSSLVP-DDSSLLFTNAGMVQFKDIFLGKVAPFTPRATSAQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A+D + K      + +
Sbjct: 61  LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAYDFVHKTLGFQNKDI 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184
           YI+V+++D +A+KLW+K   +    I  +   DNFW MA+TGPCG CSEI+ DQG +   
Sbjct: 121 YISVHEKDTQAYKLWQKF--VPESHIKTMGDKDNFWQMADTGPCGYCSEIYIDQGAQAFH 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+++  +     L +  IDTGMGLER+  +L+   NN+
Sbjct: 179 SEQDYFGGEGDRFLEIWNLVFMQYDRSKEGVLTPLSQPCIDTGMGLERVQALLEGVQNNF 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LFK L+   E+V  + Y  +   + RV+ DH RS  FL+A G+   N GRGYVLRRI
Sbjct: 239 DSSLFKPLMACIEEVFDLPYSAHKE-SFRVLADHARSVVFLLAMGVYFDNTGRGYVLRRI 297

Query: 305 MRRAMCYARLL------GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +RRA+ +  LL        +EP    +L ++C  M   Y  L + +  ++   ++E+E F
Sbjct: 298 LRRALRHGYLLEHAKGRELSEPFFYKILGSVCASM-RDYSILQEQQESLQAECKAEEELF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TL++G+ L +  L+    +EI +G VAFKLYDT+G PLD+  D+L  +G+  +D+  +
Sbjct: 357 LNTLEKGMHLFESALAE--SNEIFSGAVAFKLYDTYGFPLDLTMDMLRDKGIE-VDLAGY 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQR+R++       SG  + +      K     F GY              +   
Sbjct: 414 EACMQEQRARSQ----FKQSGAKDSLKTLDLSKLEPNAFEGYHH----------ESLKAS 459

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IG 536
              +   +   ++V         V+ A    K  VV D+TPFY + GG +GD G    + 
Sbjct: 460 IRALYAPDDQGALV--------SVQSAAQNTKAYVVLDKTPFYPQGGGPIGDKGVLLDLT 511

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 + D QK    I +     +R   R    ++  +   +R +++ +HSATHLLH A
Sbjct: 512 HNPIAHVLDTQK-VGAINISLVEFKREG-RVGDGVIAQV--IDRAEIAKHHSATHLLHLA 567

Query: 597 LSTILG---------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           L  +LG         + + Q GS I    LRFD +  + ++ AE++++E+ VN  I+   
Sbjct: 568 LREVLGRAAQAEGKNAQIQQKGSHIETTRLRFDFSFYRALSDAEIEAVEEFVNTQISMGA 627

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                 M  E A  SGA  L   KY + VRVV +        S   CGG HVS +  I  
Sbjct: 628 STNIEHMGAEAAKQSGAVMLFEDKYLEEVRVVRIAG------SLEACGGVHVSDSAHIGG 681

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I   SS+ AG+RRIEA+ G+     +  +   L+     LK S            +  
Sbjct: 682 FAITKSSSVSAGVRRIEAVCGKTYYQFIAQERATLRQARQKLKTS------------DLL 729

Query: 768 RKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           + L         + N   L   H I +         +   KE  +++D  +K+ +  + +
Sbjct: 730 KALDTKAQSATPKPNCAHLVQWHSIRNKQLALLHAQKEHLKEFLALIDTHKKQQKDLVAL 789

Query: 827 LVGISKEKKA---SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA------QS 877
            +  + +K+    S+  V +ED+L       L      +  G  GGG+          Q 
Sbjct: 790 FLYPNLQKQGLELSLKSVGSEDMLALLT--RLKSQLDTLGYGHKGGGKRDYVSLLIQKQG 847

Query: 878 GGPNGNKADQAIAGVAS 894
           G     + D  +  +  
Sbjct: 848 GALTPEEIDHLVQTLKQ 864


>gi|218680942|ref|ZP_03528839.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 556

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 295/581 (50%), Positives = 398/581 (68%), Gaps = 31/581 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E+G+R++E WNLVFMQFEQ     R  LP+ SIDTGMGLERMA +LQ   + +D DLF+ 
Sbjct: 2   EDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFDTDLFRT 61

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           L  A E   G+K  G    +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIMRRAM +
Sbjct: 62  LTGAIEDAVGVKAAG--SASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIMRRAMRH 119

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
           A+LLG  EPL+  LLP L  +MG AYPEL++A+ LI ETL+ E+ RF KTL+RGL LL  
Sbjct: 120 AQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERGLSLLSD 179

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
             + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F  A++ Q++ AR+
Sbjct: 180 ATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQKAEARS 238

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           H  G G   TE +WF LK+K+GAT+F+GYD                           + +
Sbjct: 239 HWAGSGEKATETVWFELKDKHGATEFLGYDT-----------------------EAAAGV 275

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V+AIV+ G +  EA +G KV++V +QTPFY E+GGQ+GDTG    D  ++ ++D QKK E
Sbjct: 276 VQAIVKDGAVATEAKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHGKIDVSDTQKKGE 335

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G+FVH   V  G+ +   ++VLT+D+  R +L  NHSATHLLH A+  +LG+HV+Q GS 
Sbjct: 336 GLFVHSGTVVEGVFKAGDAVVLTVDHARRSRLRANHSATHLLHEAMREVLGTHVAQKGSL 395

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           + P+ LRFDV+H KP+++ ELK +E+  N+I+ QN PV TR+M+ +DAIA GA AL G K
Sbjct: 396 VAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNAPVTTRLMSVDDAIAEGAMALFGEK 455

Query: 672 YNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y D VRVVS+     G      +S  LCGGTHVS+TG+I L+ I+ ES++ AG+RRIEA+
Sbjct: 456 YGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGESAVGAGVRRIEAV 515

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           TG+ AR +L  QD+++K+LA+ LKV    V+ RVE + +E 
Sbjct: 516 TGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDER 556


>gi|301757306|ref|XP_002914501.1| PREDICTED: LOW QUALITY PROTEIN: probable alanyl-tRNA synthetase,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 984

 Score =  635 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 277/961 (28%), Positives = 436/961 (45%), Gaps = 89/961 (9%)

Query: 4   VSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57
             ++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      
Sbjct: 39  ARAVRDAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEMAG 98

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTK 116
           ++ V   QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+
Sbjct: 99  FRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQ 158

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + + + RL+++ +        D D E+  +W  + G+    ++     +NFW M +TGP
Sbjct: 159 VYGIPEDRLWVSYFGGDPKAGLDPDLESRDIWLSL-GVRDSHVLSFGPEENFWEMGDTGP 217

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPC+EI +D    +            + +E+WNLVF+Q  ++       LP+  +DTGM
Sbjct: 218 CGPCTEIHYDLAGRVGA---------PQLVELWNLVFIQHNREADGSLQPLPQRHVDTGM 268

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHL 279
           GLER+  VLQ   + YD DLF  L++A  Q           G   EG   + +RV+ DH+
Sbjct: 269 GLERLVAVLQGTRSTYDTDLFSPLLKAIHQGCRAPPYLGRVGAADEGRTDMAYRVVADHI 328

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338
           R+ S  IADG+ P   G   VLRRI+RRA+ ++  +L      +  L+P +   +G AYP
Sbjct: 329 RTLSVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAYP 388

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGL 396
           EL +    I   +  ++  F  +L RG  ++D  L  LG  E+   +VA+ L      GL
Sbjct: 389 ELQKNSAQIAHLVSEDEAAFLASLQRGRQIIDRTLRRLGPSELFPAEVAWSLSLAGNLGL 448

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           PLD+++ +L  +G+  +D     +  +E+      H         E+         G  Q
Sbjct: 449 PLDLLELMLEEKGV-QLDSAGLARLAQEEAQ----HRSQQSEPVQEQGLQLNVHALGELQ 503

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S    +    L      + +   + +++   + G  V     GQ+  ++ D
Sbjct: 504 RRGVPPTDDS---PKYNYSLRPSGGYEFSACEAQVLQLYTEDGTAVASVGKGQRCGLLLD 560

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDV-QKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           +T FYAE GGQ  D G  +  G    +  V Q +  G F+ H  V    L+    + L +
Sbjct: 561 KTNFYAEQGGQASDRGYLVRVGQEDVLFPVAQAQVCGGFILHEAVAPEGLKVGDQVQLHV 620

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R +    H+ATHLL  AL   LG H  Q GS ++P+ LRFDV    P+T  +L+++
Sbjct: 621 DEAWRLRCMEKHTATHLLSWALRQTLGPHTEQRGSHLSPERLRFDVATQAPLTPEQLRAV 680

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYED 685
           E  V D + Q+ PV    +             L   Y D V          R +    + 
Sbjct: 681 EGTVQDAVGQDEPVYMEDVALALTAHVPGLRSLDEVYPDPVRVVSVGVPVARALDPASQA 740

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKL 742
               S  LC GTH+  TG +  L IV E  +  G  R+ A+TG   Q+AR       +++
Sbjct: 741 ALRTSVELCCGTHLLRTGAVGDLVIVGERQLTKGTTRLLAVTGEQAQQAREVGQNLAQEV 800

Query: 743 KSLASFLKVSQGNVVGRVE--------------EIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++    L     +V                    +  ++++ +L  A + LQ        
Sbjct: 801 EAATERLSRGSQDVAAAQRLSKDVGRLTDAVDTALMPQWQRRELQAALKALQRRANAAIR 860

Query: 789 H-KIADVNFMSHIISE-------------VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
             ++  V   +                    S+ L  V+  L ++     ++L+      
Sbjct: 861 KLELGQVRXCAADTLGQGQRHWRGAATVCPPSQVLVKVVRQLCERAPGTSVLLLSPQPRG 920

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                  V +     F A   A      +GG   G R  +AQ  G   +    A++   +
Sbjct: 921 HVLCACQVAQSATPAFTAEAWALAVCSPMGGKAWGSR-VVAQGTGTTAD-LGAALSTARA 978

Query: 895 F 895
           +
Sbjct: 979 Y 979


>gi|148377682|ref|YP_001256558.1| alanyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|205830150|sp|A5IYK5|SYA_MYCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148291728|emb|CAL59114.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma
           agalactiae PG2]
          Length = 880

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 280/915 (30%), Positives = 454/915 (49%), Gaps = 98/915 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+   H ++ S SLIP ND +L++ NSG+   KN F+G++ P    +T
Sbjct: 5   TSTEIRQKWLDFFESKNHLVIESKSLIPVNDSSLLWINSGVATLKNYFSGKKVPPAFRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI  A + L    ++D 
Sbjct: 65  NSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVLEMDF 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T Y+ED EA   W + +G+    +I  T + NFW +   GPCGPC+EIF+D+GE 
Sbjct: 121 EKLYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLGS-GPCGPCTEIFYDRGEK 178

Query: 183 I---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+
Sbjct: 179 YDRRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLASIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRSSSFLIAD 288
              NYD DLF ++I+  E+ +  KY           +G    N ++I DH+R+    IAD
Sbjct: 239 VPTNYDSDLFINIIREIEKYSPYKYVIENYFAKDEHQGEINTNFKIIADHIRTVVNAIAD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY++RR++RR+      LG  +  +  L+  +   +   Y      +  + 
Sbjct: 299 GAKVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEY-----NEKDVI 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+  F KT+++G +LL+  L +  ++++ +G VAF L +T+G P+++  +IL  +
Sbjct: 354 DAIKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEILHQK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSK 467
           G++ +D+ +F  A    + +    S G  +   +K+  SL         F+GY  L    
Sbjct: 412 GIS-VDMDAFELA----KEKHALASKGGKATGMDKVINSLALIDKKMDNFVGYSEL---- 462

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                +S V  +  +   VE   +G    V+ + TPFYA +GGQ
Sbjct: 463 -------------------SANSKVLKLFDEENEVEGFETG--GYVLLETTPFYATSGGQ 501

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I    +++I DV K   G  +H      G +     +   +D   R  L  NH
Sbjct: 502 RHDKGFIIQGENKIKIIDVFKDKFGNHIHFV---EGKMNNHEPVSSFVDPNIRIGLERNH 558

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  AL  +LGSH+ Q GS    + L FD    +  +  ++K++ED V   I +++
Sbjct: 559 SGTHLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYITKSI 618

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                    + A   GA   L   +Y D   +  V +   G  +S LCGGTH+S+T ++ 
Sbjct: 619 DREYITTTVDKAREMGAIMTLEEGEYMDPRAIRVVRF---GDITSDLCGGTHLSNTSKLE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLK-SLASFLK-------------- 750
              I +    +AG+ RI AI+  +    +L   ++KL   LA+ +K              
Sbjct: 676 SFKITNVEKKQAGVFRIRAISSSKLVNEYLSKVNKKLNEELATIIKKIKELKSDYVAPAI 735

Query: 751 --------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
                       ++  R++E+ E Y+  QL+     L+ + E +   KI D +   ++  
Sbjct: 736 NENEPDIETLNASINKRIDELREVYK--QLLKESSNLEFDYETVKFDKIKDYDVYINL-- 791

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +VD+  +K +  +++ K Q G  + +  SK +   +L + T       +A  + +  A  
Sbjct: 792 DVDASAVKLIAASIRDKFQLGKTVAIIGSKNENELLLAIATRA----IDANKMFKKLASE 847

Query: 863 LGGGGGGGRPHMAQS 877
           L  G GGG P +A  
Sbjct: 848 LN-GRGGGAPILAMG 861


>gi|197294554|ref|YP_001799095.1| alanyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|171853881|emb|CAM11843.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 863

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 278/929 (29%), Positives = 448/929 (48%), Gaps = 108/929 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  +L+FF   GH +  S SLIP  DPTL++ N+G+ P K  F G + P+ + 
Sbjct: 1   MKSFA-IRKMWLDFFSSKGHHIEKSFSLIPHQDPTLLWVNAGVTPLKKYFDGSQTPLCKK 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           +  VQKC+R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  A++LLT  K F
Sbjct: 60  IVNVQKCIRT----NDIENVGETARHHTFFEMLGNFSIGDYFKKEAIHYAYELLTSSKWF 115

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                +LYIT Y  D++ +K W ++ G+  D++I +    NFW +   GP GPC+EIFFD
Sbjct: 116 SFPLDKLYITYYPTDKDTYKYWLEL-GIRKDRLIPL--KSNFWQIG-PGPSGPCTEIFFD 171

Query: 179 QGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQE---RFILPKMSIDTGMGLER 232
           +GE        L     E  R+IEIWN+VF Q+    K        LP  +IDTG GLER
Sbjct: 172 RGEKYDKRNKELIIEDLENNRFIEIWNIVFSQYNCDPKLSIEQYQELPNKNIDTGAGLER 231

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQE  NN++ DLF  LI++  +++ + Y   +    ++I DHL++  F I DG   
Sbjct: 232 LAAILQEADNNFETDLFFPLIKSIAKLSQIPYH-QSPKAFKIIADHLKTLVFAINDGATL 290

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
            NE RGYVL++++RR+    + L + +P + +L+      M   YPEL + K  I++ L 
Sbjct: 291 TNEKRGYVLKKLLRRSFIQGKKLNFNQPFLHNLVDPTINMMQDFYPELTKNKNYIKDILL 350

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            ++  F +TL            +  K + L+G   FKLYDT+G+P D++ D      ++ 
Sbjct: 351 KQEHVFLETLKTAEAKFL----YYAKKKSLSGINFFKLYDTYGIPEDVIIDYAKINNVS- 405

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   LE+ R  ++ + + +     ++  F        ++F+GY+           
Sbjct: 406 VDYKGFKFLLEKHRQISQKNHIFISKMNQQEEKF--LNFREKSEFLGYNNFA-------- 455

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                          + + V  +  +G             +V  QTPFYA  GGQ+ D G
Sbjct: 456 ---------------LKTKVIKVFDKG-------------IVLAQTPFYAPMGGQIADEG 487

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              G     ++ ++ K   G  +H      G       +   ID + R Q+S +H+ATHL
Sbjct: 488 FIDGK----KVKNITKLPNGQHLHQI---EGSFYEGQEVFAQIDKKVRDQISYHHTATHL 540

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L   L   LGSH+ + GS +  + LR+D  H + +T  +L  IE  +N +I +NL V  +
Sbjct: 541 LETVLQNELGSHLEKQGSSVGYNSLRYDFNHFEKLTPEKLIKIEKEINGLIKKNLSVEIQ 600

Query: 653 IMNREDAIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            +  ++A  + +  L      KY D VR+V +    G   S  LCGGTH S T  +    
Sbjct: 601 KIPTQEAKENYSDILSKNPKAKYKDEVRIVRI----GNDFSIDLCGGTHASETKNLEKFV 656

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQ------------ 753
           I+S  +I +GI RIEA+ G   ++ L+ +       +K L    +  +            
Sbjct: 657 ILSYETISSGIYRIEAVCGNNIKTALVDKLKPYQLTVKQLIQKAQTKKLFFEALPVPQIN 716

Query: 754 ---GNVVG---RVEEIWEEY---RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
               +++     ++E+ ++     K  L +  +K+    +     KI+    +  I  ++
Sbjct: 717 QSYQDILDYQNYLKELQKQIFICEKKDLEYRCKKMIQEKDKFLPEKISKETLI-IIEEDI 775

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + + LK  MD +   ++  I+ +  ++  K   +           ++A  L +  + +  
Sbjct: 776 NMEVLKCFMDNIFDTLKIDILFICQLNLSKVVFLC------KSKTWHAGKLVKEISSLAL 829

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
            G GGG   +AQ G        Q I  + 
Sbjct: 830 -GSGGGNAFLAQGGSKTTQTIKQTIKTLK 857


>gi|322379407|ref|ZP_08053777.1| alanyl-tRNA synthetase [Helicobacter suis HS1]
 gi|321148116|gb|EFX42646.1| alanyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 862

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 306/890 (34%), Positives = 448/890 (50%), Gaps = 85/890 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I+  FLE+F+   H L+PSSSL+P  D +L+FTN+GMV FK+IF G+ KP     T+ Q
Sbjct: 2   DIKKAFLEYFKNLNHLLVPSSSLVPQ-DASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A++ + +  + D + +
Sbjct: 61  LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDI 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-P 184
           YI+V+++D+EA+KLW+K   +    I  +   DNFW MA+ GPCG CSEI+ DQGE    
Sbjct: 121 YISVHEKDQEAYKLWQKF--VPISHIKTMGDADNFWQMADVGPCGYCSEIYIDQGEKYFH 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+E+ +      L +  IDTGMGLER+  +L+   NN+
Sbjct: 179 SSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQNNF 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF+ LI   E+V  + Y  +++ + RV+ DH RS  FL+A G+   N GRGYVLRRI
Sbjct: 239 DSSLFRPLISRIEEVFDLNY-TDHLESFRVLADHARSVGFLLAMGVYFENTGRGYVLRRI 297

Query: 305 MRRAMCYARLLG------YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +RRA+ +  LL         EP    +L  LC  M   YP L + K  IE   ++E+E F
Sbjct: 298 LRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLM-PDYPLLAEHKESIEAECKAEEELF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD+G+ L +  L         +G VAFKLYDT+G PLD+  D+L  + +  +++  +
Sbjct: 357 LATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLRHKNIT-VNLEEY 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQ+ R++        G       +L        F+GY+                 
Sbjct: 415 QACMQEQQQRSQFKQSHAKEGFKNLDLSALV----PNVFVGYE----------------- 453

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    V + + A+              +  +V D+TPFYA+ GG +GD G  +   
Sbjct: 454 ------CESVQAKILALY--------LEEANRAFLVLDKTPFYAQGGGPIGDRGVILDTN 499

Query: 539 IRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             L  Q+ D QK  E       +VE   L    S++  +   +R +++ +HSATHLLH A
Sbjct: 500 HVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEV--SHRLEIAKHHSATHLLHLA 557

Query: 597 LSTILGS---------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           L  ILG           + Q GS I P  LRFD +  + +   E++ IE  VN  IA  +
Sbjct: 558 LREILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIALAM 617

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P     M    A  SGA  L   KY ++VRVV +        S   CGG HV ++ +I  
Sbjct: 618 PTSVENMQALQAKESGAIMLFEDKYLEQVRVVKIAG------SVEACGGVHVQNSAQIGG 671

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+  SS+ AG+RRIEA+ G+     +  +   LK     LK    ++           
Sbjct: 672 FAIIKVSSVSAGVRRIEAVCGEAYYDFIAQERRILKEARQKLKT--HDI----------L 719

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGII 825
           + L    + +      +  + HKI   NF   ++  +     +  + +D  + + +S + 
Sbjct: 720 KALDHKQSPKSPVKPAQKPTLHKIPGQNFPLAVLKGLKEHLDDFFAFVDLYKSRQESLVA 779

Query: 826 MLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           +    + +K     VL  V E    R     L   +  +     GGGR  
Sbjct: 780 LFQYHNLQKGCLEWVLKSVGE-ADMRVLLEALKNHAKDLGYTSKGGGRSD 828


>gi|322380891|ref|ZP_08054970.1| alanyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321146695|gb|EFX41516.1| alanyl-tRNA synthetase [Helicobacter suis HS5]
          Length = 862

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 306/890 (34%), Positives = 448/890 (50%), Gaps = 85/890 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
            I+  FLE+F+   H L+PSSSL+P  D +L+FTN+GMV FK+IF G+ KP     T+ Q
Sbjct: 2   DIKKAFLEYFKNLNHLLVPSSSLVPQ-DASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQ 60

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
            C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF  YFKE AI  A++ + +  + D + +
Sbjct: 61  LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDI 120

Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-P 184
           YI+V+++D+EA+KLW+K   +    I  +   DNFW MA+ GPCG CSEI+ DQGE    
Sbjct: 121 YISVHEKDQEAYKLWQKF--VPISHIKTMGDADNFWQMADVGPCGYCSEIYIDQGEKYFH 178

Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244
                   EG+R++EIWNLVFMQ+E+ +      L +  IDTGMGLER+  +L+   NN+
Sbjct: 179 SSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQNNF 238

Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           D  LF+ LI   E+V  + Y  +++ + RV+ DH RS  FL+A G+   N GRGYVLRRI
Sbjct: 239 DSSLFRPLISRIEEVFDLNY-TDHLESFRVLADHARSVGFLLAMGVYFENTGRGYVLRRI 297

Query: 305 MRRAMCYARLLG------YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           +RRA+ +  LL         EP    +L  LC  M   YP L + K  IE   ++E+E F
Sbjct: 298 LRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLM-PDYPLLAEHKESIEAECKAEEELF 356

Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             TLD+G+ L +  L         +G VAFKLYDT+G PLD+  D+L  + +  +++  +
Sbjct: 357 LATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLRHKNIT-VNLEEY 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              ++EQ+ R++        G       +L        F+GY+                 
Sbjct: 415 QACMQEQQQRSQFKQSHAKEGFKNLDLSALV----PNVFVGYE----------------- 453

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                    V + + A+              +  +V D+TPFYA+ GG +GD G  +   
Sbjct: 454 ------CESVQAKILALY--------LEEANRAFLVLDKTPFYAQGGGPIGDRGVILDTN 499

Query: 539 IRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             L  Q+ D QK  E       +VE   L    S++  +   +R +++ +HSATHLLH A
Sbjct: 500 HVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEV--SHRLEIAKHHSATHLLHLA 557

Query: 597 LSTILGS---------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           L  ILG           + Q GS I P  LRFD +  + +   E++ IE  VN  IA  +
Sbjct: 558 LREILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIALAM 617

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P     M    A  SGA  L   KY ++VRVV +        S   CGG HV ++ +I  
Sbjct: 618 PTSVENMQALQAKESGAIMLFEDKYLEQVRVVKIAG------SVEACGGVHVQNSAQIGG 671

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             I+  SS+ AG+RRIEA+ G+     +  +   LK     LK    ++           
Sbjct: 672 FAIIKVSSVSAGVRRIEAVCGEAYYDFIAQERRILKETRQKLKT--HDI----------L 719

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGII 825
           + L    + +      +  + HKI   NF   ++  +     +  + +D  + + +S + 
Sbjct: 720 KALDHKQSPKSPVKPAQKPTLHKIPGQNFPLAVLKGLKEHLDDFFAFVDLYKSRQESLVA 779

Query: 826 MLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           +    + +K     VL  V E    R     L   +  +     GGGR  
Sbjct: 780 LFQYHNLQKGCLEWVLKSVGE-ADMRVLLEALKNHAKDLGYTSKGGGRSD 828


>gi|323452905|gb|EGB08778.1| hypothetical protein AURANDRAFT_53556 [Aureococcus anophagefferens]
          Length = 1031

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 286/969 (29%), Positives = 440/969 (45%), Gaps = 129/969 (13%)

Query: 4   VSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
              IR TF++      GH   PSSS++P  DPTL+F N+GM  +K+IF G          
Sbjct: 29  AKKIRDTFVQRAGGARGHTHWPSSSVVPHEDPTLLFANAGMNQYKSIFLGLAPRRKRRRA 88

Query: 59  ---------------------------QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFE 91
                                      +     QKC+RAGGKHNDLD+VG+   HHTFFE
Sbjct: 89  TPDDYNTPLPIPSFGGTIDPKTKMATLKRACNSQKCIRAGGKHNDLDDVGKDLYHHTFFE 148

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWK 141
           MLGN+SFG YFKE AI++AW+ LT EF LD  RLY+T +            DEE  ++W 
Sbjct: 149 MLGNWSFGDYFKEEAIRMAWECLTVEFQLDPDRLYVTYFGGDALKAPGVPSDEETRQIWL 208

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
           K   + A++++     DNFW M +TGPCGPC+EI +D+           + +    IEIW
Sbjct: 209 KY--VPAERVLPFDAGDNFWEMGDTGPCGPCTEIHYDRVGG-RDAAALVNMDDPDVIEIW 265

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N VF+Q+ +        LP   +DTGMG ER+A++LQ + +NYD D+F  L    + V+G
Sbjct: 266 NNVFIQYNRDKFG-LKELPAQHVDTGMGFERLASILQGQMSNYDTDIFTPLFAEIQAVSG 324

Query: 262 --MKYEGN--------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
             + Y G           + +RV+ DH+R+ +F I DG +P  +GRGYVLRR++RRA+ Y
Sbjct: 325 CPVAYAGKIGDEDKETKDMAYRVVADHVRTLTFAITDGAVPDTQGRGYVLRRVLRRAVWY 384

Query: 312 A-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
               LG  +  +  L+P LC  +G A+PE+++AK  +   L  E+  F +T+D+G    +
Sbjct: 385 GQHFLGAPKGFVYKLVPKLCEVLGEAFPEIVKAKDTVMAVLEGEERDFNRTIDKGARFFN 444

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
                L K     G  AF L  + G PLD+ + +   RG+  +D+  ++ AL+E++ +  
Sbjct: 445 KQAEKLPKGAPFPGSDAFVLSGSLGFPLDLCEIMAEERGMT-VDVAGYHAALKEEQDKNA 503

Query: 431 AHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           A      +  +     +   E+  A    G            + +   +   + +  G  
Sbjct: 504 AALAKRKAARSAGADMTCAAEQTAALAAAGAPKTESEGKYVWNARPAAKVVALYVGKGGG 563

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQK 548
                +V   +  + AV+G     V D T FYAE GGQ+ DTG  + D  ++  + DVQ 
Sbjct: 564 PKGDGLVDAVDPSKHAVAG----AVLDATSFYAEMGGQVYDTGALLKDDAKILDVEDVQ- 618

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGS 603
              G +V H     G L+    +   +DY  R +++ NH+ TH+L+ AL  +      G+
Sbjct: 619 -VYGGYVVHVGAPLGPLKVGDDVACAVDYDRRVRVAPNHTMTHVLNFALREVLLGGSEGA 677

Query: 604 HVSQN----------GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
                          GS +  + LRFD     P+T+ +LK++E  VN+ IA  L V    
Sbjct: 678 KADAEKTGVDRCAQRGSYVDDERLRFDFAWDAPLTADQLKAVEAIVNETIAAGLVVDAVE 737

Query: 654 MNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH-----------SSALCGGTHVSS 701
              + A+A     A+ G  Y D VRVV+V      V            S  LCGGTHV +
Sbjct: 738 TPLDAAMAVESLRAMKGEAYPDPVRVVAVGAPVADVVAAPCGAAWRGMSVELCGGTHVRN 797

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T + +   ++ E+ I  G+RR+ A T ++A +      E  + LA  L          + 
Sbjct: 798 TKDAVGFALLEENGIAKGVRRVVAATREKAAAAHAAATEIRERLA-MLGAMPLATPDHIA 856

Query: 762 EIWEEYRKLQL--------IHAKRKLQLNVEDLSC----------------------HKI 791
            + E  + L+L         H K   +  V+ L                          +
Sbjct: 857 AVGETVKALKLDVDAATMPQHEKMAAREEVQKLIAGPLKAAQKADAKKKADAAVGAFQAL 916

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKI-----QSGIIMLVGISKEKKASVLIVVTEDL 846
           A+ N    + + VD      +   LQK        +G  ++V  + +K A         +
Sbjct: 917 AESNASGAVAARVDFGADAKLWQKLQKSTLAKVAPAGSFLVVSDAGDKIAIYAAACQAHV 976

Query: 847 LDRFNAVDL 855
               +    
Sbjct: 977 DAGLDCRAW 985


>gi|221057404|ref|XP_002261210.1| alanine--tRNA ligase [Plasmodium knowlesi strain H]
 gi|194247215|emb|CAQ40615.1| alanine--tRNA ligase, putative [Plasmodium knowlesi strain H]
          Length = 1180

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/1007 (27%), Positives = 454/1007 (45%), Gaps = 133/1007 (13%)

Query: 3    NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            +   +R  F+ +F++  H ++ S+S+IP ND TL+FTN+GM  FK IF GQ         
Sbjct: 192  SAEEVRGRFINYFKEKKHTVMESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKNSDLGK 251

Query: 59   -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
             +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT  
Sbjct: 252  LKRAVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNV 311

Query: 118  FDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +D  RLY+T +          ED EA ++W K   L   +I+     +NFW MAETGP
Sbjct: 312  YKIDPNRLYVTYFGGDEKLPGCPEDFEAKRIWLKY--LDESRILPFGMKENFWEMAETGP 369

Query: 169  CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            CGPCSEI +D+           + +    +EIWN+VFMQ+ +  K+    LP   IDTGM
Sbjct: 370  CGPCSEIHYDRIGG-RDASSLVNMDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGM 428

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNN--------IVNHRVIVDH 278
            GLER+ ++LQ   +NYD DLF  + +  +++     +Y G             +RV+ DH
Sbjct: 429  GLERITSILQNVESNYDTDLFMPIFKQIKEIFNHLPEYGGKVNEEDVGRIDYAYRVVSDH 488

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMGS 335
            +R  +  I+DG LP NEGR YV+RRI+RRA+   + +   E        L+ ++C  +  
Sbjct: 489  IRCVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVESNVLWFYKLVDSVCQILKK 548

Query: 336  AYPELIQ--AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKL 390
             + +L        I+  ++ E+  F KTL++G+   + ++      G D+I NG  AF L
Sbjct: 549  CFTDLQDENRVNYIKSIIKQEEMVFNKTLEKGVDQFNKIIKKSNNAGGDKIFNGKDAFDL 608

Query: 391  YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSL 448
            Y ++G P+D++Q +   +    +++  FN+  ++ +  +  ++  +        +    L
Sbjct: 609  YTSYGFPIDLIQIMCEEKNFK-LNMFEFNELFKKHQLVSDTNNFKINKFFDLPVEKAHEL 667

Query: 449  KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-- 506
            KEK+G      +     +   + +               V + +  I      ++     
Sbjct: 668  KEKHGVEATEDHHKYEWNNDDRRND-----------MKKVDTNIVVIYDGENFIDSIKTP 716

Query: 507  -SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
               +K  ++  +T FY E GGQ+ DTG      ++ Q+ +VQK      +H  I++ G +
Sbjct: 717  NDDKKYALILKETNFYYENGGQIYDTGVIENGQMKFQVLNVQK-MNDYVLHIGILKEGKI 775

Query: 566  RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN----------------- 608
                S+   +++  R+ ++ NH+ATHLL+  +  +L  +V                    
Sbjct: 776  EKNDSVHTYVNFDRRKLVACNHTATHLLNFVIKKVLTEYVVNGEGQMKNGDLVQKKNEKE 835

Query: 609  -------------GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
                         GS +  + LRFD +  + I+   +  IE  VND+I Q L V  R M+
Sbjct: 836  ETGMNSIFNCDQKGSLVDDEKLRFDFSFFQNISDDLVSKIESQVNDLIKQELSVSVRTMD 895

Query: 656  REDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTG 703
             +++    G  A+    Y D V VV ++ +   +            S  LCGGTH+++T 
Sbjct: 896  LKESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYMCSIELCGGTHIANTK 955

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------- 754
             I    I SE SI  GI RI A+T ++A       D          +             
Sbjct: 956  FIKKFIITSEESIGKGIYRINAVTNRKAEEVEAKFDNLYAKYKHIFEDPNEGKLAEVQTY 1015

Query: 755  ----------------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
                             ++ ++E+I +   +      K            + + D + + 
Sbjct: 1016 KRILKEDKFLPYIRKNEILNKLEKIEKNIIEKTKNMQKELFNKATAIGKDYALEDKSGVL 1075

Query: 799  HIISEVDS-----KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FN 851
              +   D+     K L+ +  +  K   + +     I  ++K +  +   +D L      
Sbjct: 1076 VDVKLFDALCGNQKVLEKIAQSYCK--HNKLCSYFFIIDDEKNTYCVFEMKDSLKGITIQ 1133

Query: 852  AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA---DQAIAGVASF 895
            A    +   + + G  GGG+ + A      G      + A+  +  +
Sbjct: 1134 ADTFMKEIMQSVEGHSGGGK-NKAFGSAAKGKGVIIKELALEALKKY 1179


>gi|323331402|gb|EGA72819.1| Ala1p [Saccharomyces cerevisiae AWRI796]
          Length = 648

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 234/660 (35%), Positives = 347/660 (52%), Gaps = 50/660 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
             +++R TFL++F+   H+ + SS ++P +DPTL+F N+GM  +K IF G   P      
Sbjct: 10  TATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYT 69

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI  +W LLT+ 
Sbjct: 70  LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEV 129

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T ++ DE        EA +LWK + G+  D I+     DNFW M + GPC
Sbjct: 130 YGIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPC 188

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +E+WNLVF+QF ++       LP   IDTGMG
Sbjct: 189 GPCSEIHYDRIGG-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
            ER+ +VLQ+  +NYD D+F  L +  +++T ++    N            +RV+ DH+R
Sbjct: 248 FERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADHVR 307

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAYP 338
           + +F +ADG +P NEGRGYVLRRI+RR   YAR             L P L +++   +P
Sbjct: 308 TLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFP 367

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396
           EL +    + E L  E+  F KTLDRG  L +   S   K   + L+G   ++LYDT+G 
Sbjct: 368 ELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTYGF 427

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ + +   +GL  ID   F +A +E    ++       S   +     L E      
Sbjct: 428 PVDLTELMAEEQGLK-IDGPGFEKAKQESYEASKRGGKKDQSDLIKLNVHELSE------ 480

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVF 515
                 L  +K  K + +             V   +  +      V+E    G+K  ++ 
Sbjct: 481 ------LNDAKVPKTNDEFKYGSA------NVEGTILKLHDGTNFVDEITEPGKKYGIIL 528

Query: 516 DQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
           D+T FYAE GGQ  DTG   I D     + +VQ    G   H   +E G L     ++ +
Sbjct: 529 DKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGDKIIAS 587

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   R  +  NH+ TH+L+ AL   LG+ V Q GS + P+ LRFD +H K +++ ELK 
Sbjct: 588 FDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSNEELKK 647


>gi|156101531|ref|XP_001616459.1| alanyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148805333|gb|EDL46732.1| alanyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 1197

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 269/976 (27%), Positives = 448/976 (45%), Gaps = 127/976 (13%)

Query: 6    SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60
             +R  F+ +F++  H ++ S+S+IP ND TL+FTN+GM  FK IF GQ          + 
Sbjct: 212  EVRGGFINYFKEKNHTVVESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKSSDLGKLKR 271

Query: 61   VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
                QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT  + +
Sbjct: 272  AVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNVYKI 331

Query: 121  DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            D  RLY+T +  DE         E  K+W K   +   +I+     +NFW MA+TGPCGP
Sbjct: 332  DPNRLYVTYFGGDEKLASCPEDLETKKIWLKY--VDESRILPFGMKENFWEMADTGPCGP 389

Query: 172  CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
            CSEI +D+           +++    +EIWN+VFMQ+ +  K+    LP   IDTGMGLE
Sbjct: 390  CSEIHYDRI-GNRDASSLVNKDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGMGLE 448

Query: 232  RMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNN--------IVNHRVIVDHLRS 281
            R+ ++LQ   +NYD DLF  + +  +++     +Y G             +RV+ DH+R 
Sbjct: 449  RITSILQNVESNYDTDLFMPIFKQIKEIFNYLPEYGGKVNEEDVDRIDYAYRVVSDHIRC 508

Query: 282  SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMGSAYP 338
             +  I+DG LP NEGR YV+RRI+RRA+   + +            L+ ++C  +   + 
Sbjct: 509  VTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVGSNVLWFYKLVDSVCHILNKCFT 568

Query: 339  ELIQ--AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDT 393
            +L        I+  ++ E+  F +TL++G+   + ++      G D + +G  AF LY +
Sbjct: 569  DLKDEDRVNYIKSVIKQEEMVFNRTLEKGVDQFNKIIKRGNTSGGDNLFSGKDAFDLYTS 628

Query: 394  HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEK 451
            +G P+D++Q +   +    +++  FN+   + +  +  ++  +        +    LKEK
Sbjct: 629  YGFPIDLVQIMCEEKNFK-LNMTEFNELFRKHQLVSDTNNFKINKFFDLPVEKAHELKEK 687

Query: 452  YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSG 508
            +G    + +            +         ++   V + V  I      ++    A   
Sbjct: 688  HGVAATVDH-----------YKYEWNNADGKNVMAKVDTGVVVIYDGENFLDSIETASED 736

Query: 509  QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +K  ++  +T FY E GGQ+ DTG    + ++ ++ +VQK      +H  +++ G ++  
Sbjct: 737  KKYALILRETNFYYENGGQIYDTGVIQNEQMKFEVVNVQK-MNEYVLHIGVLQEGKIQKN 795

Query: 569  MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ--------------------- 607
              +   +++  R+ ++ NH+ATHLL+  +  +L  +V                       
Sbjct: 796  DCVHTVVNFDRRKLVACNHTATHLLNFVIKKVLTEYVMHSKGGAQNGDLAHTPNEKEQTG 855

Query: 608  ---------NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
                      GS +  + LRFD +  + ++   +  IE  VND+I Q L V  R M+ ++
Sbjct: 856  GNSIFNCDQKGSLVDDEKLRFDFSFFQNVSDELVSKIESQVNDLIRQELSVSVRTMDLKE 915

Query: 659  AIA-SGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEIM 706
            +    G  A+    Y D V VV ++ +   +            S  LCGGTH+++T  I 
Sbjct: 916  SKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYLCSIELCGGTHIANTKFIK 975

Query: 707  LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---EEI 763
               I SE SI  GI RI A+T ++A       D+ L              +  V   + +
Sbjct: 976  KFVITSEESIGKGIYRINAVTNKKAEEVEAKFDDLLAKYKHIFDDPNEGKLADVQTYKRV 1035

Query: 764  WEE------YRKLQLIHAKRKLQLNV-------------------EDLSCHKIADVNFMS 798
             +E       RK Q++H   K++ N+                   +D +    + V    
Sbjct: 1036 LKEDKFLPYIRKNQILHNLEKIEKNIIEKTKNMQKELFNKATTIGKDYALEDKSGVLLDV 1095

Query: 799  HIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDL 855
             +   +    K L+ +  +   K          I  EK    +  V + L      A   
Sbjct: 1096 KLFDALSGNQKVLEKIAQSYC-KHNKLCSYFFIIDDEKNTYCVFEVKDSLKGTSIQADAF 1154

Query: 856  ARLSAKVLGGGGGGGR 871
             +   + + G  GGG+
Sbjct: 1155 MKEIMQSVEGHSGGGK 1170


>gi|54020387|ref|YP_115693.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|81603668|sp|Q601M2|SYA_MYCH2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|53987560|gb|AAV27761.1| alanyl tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 883

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 271/910 (29%), Positives = 445/910 (48%), Gaps = 88/910 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANEIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSKKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 I---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+
Sbjct: 179 FDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYAPLKSKNIDTGAGFERIVSILQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I D
Sbjct: 239 GPTNYDTDLFLPIIAEIEKNTVFRYKIENYFLKKPRQTQINKSFRIIADHIRAITLAIND 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +         I 
Sbjct: 299 GVQPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRF-----DIPTIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + + +E+E F KTL+ G  LL+  L  + K++I      FKL++T+G P+++ ++IL  +
Sbjct: 354 KIILNEEENFAKTLEIGYNLLESQL-KINKNQIKPV-TVFKLFETYGFPVELTKEILAEK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +        +Q +E Q   ++       +G  + I    + K   + FIGY        
Sbjct: 412 NI----DFDLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGYHTH----- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              + + +  +  + E V E        V+F++TPFYA AGGQ 
Sbjct: 463 ------------------HIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQK 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I +   ++I DV K      +H   V +G +     + L +D +NR  L  NHS
Sbjct: 505 HDQGWIIQNNSTIEILDVFKDKFLNNIH---VFKGKIVKNQPVFLKLDTKNRLNLERNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q + 
Sbjct: 562 GTHLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIK 621

Query: 649 VVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               + N E+A    A   L   +Y D   +  V ++     ++ LCGGTH+ +T  +  
Sbjct: 622 RKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEK 678

Query: 708 LYIVSESSIRAGIRRIEAITGQ-RARSHLMGQ-DEKLKSLASF----------LKVSQGN 755
             I+S  S  +GI RI A+T   +    L G+  E L  +++             ++  N
Sbjct: 679 FTILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALKNKIKKIEPNFGLNLPN 738

Query: 756 VVGRVEEIWEEYRKLQ-------LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
           +V  +E+ ++  +K++           K +L++   +L  +KI ++   S  +   +   
Sbjct: 739 LVD-LEQQFDYLKKIEDDLRIYYKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPLH 797

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            LK +    +++      +L           LI+V+  +L    A +        +  G 
Sbjct: 798 NLKQIAATWREQNPRISFILGANLVNN--EFLIIVSSAIL----ASNQILEKILEIFTGS 851

Query: 868 GGGRPHMAQS 877
           GGG   +AQ 
Sbjct: 852 GGGNYKIAQG 861


>gi|298526028|ref|ZP_07013437.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|298495822|gb|EFI31116.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
          Length = 750

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 259/774 (33%), Positives = 390/774 (50%), Gaps = 64/774 (8%)

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
             DN+WSM   GPCGP SEI++D+G    P G P  SE+  RY+E+WNLVFMQ E+    
Sbjct: 1   MADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGT 58

Query: 215 ERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--- 265
            +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y+   
Sbjct: 59  TKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGN 118

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
             + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L
Sbjct: 119 HEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDL 178

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILN 383
           +  +   MG +YPEL+     I     +E+  F +TL  G  L + V S   K    +L+
Sbjct: 179 MATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLS 238

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        + 
Sbjct: 239 GSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADL 297

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
             +      GAT+F G+D LR                         + +  I   G+ V 
Sbjct: 298 SAYRELVDAGATEFTGFDELRS-----------------------QARILGIFVDGKRVP 334

Query: 504 E--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAE 551
                    A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+
Sbjct: 335 VVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAK 394

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS 
Sbjct: 395 TLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSL 454

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
             P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G  
Sbjct: 455 NRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGES 514

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +
Sbjct: 515 YPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDS 570

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDL 786
             HL  +   +  LAS LKV    V  RV  + E  R  +    + ++            
Sbjct: 571 FRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAA 630

Query: 787 SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V  +
Sbjct: 631 GAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAAN 690

Query: 846 LLD---RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                    A DL +  A  +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 691 PAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 743


>gi|240047430|ref|YP_002960818.1| alanyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239985002|emb|CAT04995.1| Alanyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 884

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 276/914 (30%), Positives = 434/914 (47%), Gaps = 92/914 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  +L+FF    H ++ S SLIP NDP+L++ NSG+   K  FTG ++P  + +T
Sbjct: 6   SSKQIRQLWLDFFASKNHLIVESKSLIPQNDPSLLWINSGVATLKEYFTGHKQPPSKRIT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ L     +D 
Sbjct: 66  NSQKAIRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEFAFEFLVYVLKMDL 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT + +D E  K W+ + G+  D +I      NFW +   GPCGPCSEI++D+GE 
Sbjct: 122 DKLYITYFSDDLETKKYWQDL-GIQDDHLIAGNQKTNFWDIGL-GPCGPCSEIYYDRGEK 179

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +R+IEIWN+VF +F    +     L   +IDTG G ER+ ++LQ 
Sbjct: 180 FDSRGIELLKNDIENDRFIEIWNIVFSEFNNDGEGNYTPLVSKNIDTGAGFERIVSILQN 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIAD 288
              N+D DLF  +I   E+++  KY+ +N               +VI DH+RS    I D
Sbjct: 240 GPTNFDTDLFLPIILEVEKLSDFKYDVDNYFKKDKKQTKINTYFKVIADHIRSVVNAIND 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    R LG  +  +  L+  + + +     E       + 
Sbjct: 300 GVEPSNTHRGYIIRRLIRRAFRMGRKLGIKQAFLYKLVGVVKSSLIYDIDE-----KKVA 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + ++ E+E F KT++ G +LL+      GK+   N ++ FK+++T+G P+++ Q+IL  +
Sbjct: 355 KIIKKEEELFEKTIENGEILLNREFEKNGKN--FNIEIVFKMFETYGFPIELTQEILEEK 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSK 467
           GL  +D     +  E+  + +R    G           SL   K   ++F+GY+ L    
Sbjct: 413 GLK-LDFDKIEELKEKHANLSR----GKQHLGMNLAINSLALIKGKESEFVGYEHLE--- 464

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                ++ +  +     ++E     +    +FD+TPFYA  GGQ
Sbjct: 465 --------------------QTAKILFLANNESLLETTQEDEISYAIFDKTPFYATGGGQ 504

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I    +++I  V K      +H   V +G+L     + L +D  NRR L  NH
Sbjct: 505 KHDQGLIIQGDNKIEIIKVFKDKYFNNIH---VFKGVLNKNEEVKLIVDEANRRNLERNH 561

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL  AL    G  + Q GS    + L FD   SK  T  EL  +E  VN  I  + 
Sbjct: 562 SATHLLFKALREQFGLQIKQLGSDNNENRLTFDFPVSKKPTDEELAKVESLVNFYIQSST 621

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           P        ++A    A   L   +Y D   V  V ++     ++ LCGGTH+++T  I 
Sbjct: 622 PRKYLNTTIKEAEKLNAIMTLEEAEYMDPKNVRLVHFQG---ITTDLCGGTHIANTSLIQ 678

Query: 707 LLYIVSESSIRAGIRRIEAITG-QRARSHLMGQ--DEKLKSLASFLKVSQGNV-----VG 758
              I+S  +  +G+ RI AIT  ++   +L  Q   ++L   A   K  Q +      V 
Sbjct: 679 KFKIISCQNKGSGVFRIRAITTLEKYYDYLTQQVEQKELSLAAIEQKNRQFDPFYKMQVH 738

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVE-------------DLSCHKIADVNFMSHIISEVD 805
           RV ++      L L   + KL                    +  KI   N     I  + 
Sbjct: 739 RVNDLEILNNNLDLAIKQAKLDTLQLIKNKKKEEKTTDFIFNQEKIFTFNNQDFYIDFIT 798

Query: 806 SKEL--KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            K++  K +   L+++  +   +L+     +K  V++    +     N++D+     K +
Sbjct: 799 DKQINSKQLAATLREEHANITFVLLQEMAAQKILVVVSSKTN-----NSLDILNKINK-I 852

Query: 864 GGGGGGGRPHMAQS 877
             G GGG   +AQ 
Sbjct: 853 FDGKGGGNKIIAQG 866


>gi|260205874|ref|ZP_05773365.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
          Length = 751

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 259/775 (33%), Positives = 390/775 (50%), Gaps = 64/775 (8%)

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
              DN+WSM   GPCGP SEI++D+G    P G P  SE+  RY+E+WNLVFMQ E+   
Sbjct: 1   GMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEG 58

Query: 214 QERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-- 265
             +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y+  
Sbjct: 59  TTKEDYQILGPLPRNNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVG 118

Query: 266 -GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH 324
              + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  
Sbjct: 119 NHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGD 178

Query: 325 LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EIL 382
           L+  +   MG +YPEL+     I     +E+  F +TL  G  L + V S   K    +L
Sbjct: 179 LMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVL 238

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442
           +G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        +
Sbjct: 239 SGSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHAD 297

Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502
              +      GAT+F G+D LR                         + +  I   G+ V
Sbjct: 298 LSAYRELVDAGATEFTGFDELRS-----------------------QARILGIFVDGKRV 334

Query: 503 EE--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKA 550
                     A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A
Sbjct: 335 PVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIA 394

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS
Sbjct: 395 KTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGS 454

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
              P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G 
Sbjct: 455 LNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGE 514

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  
Sbjct: 515 SYPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLD 570

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVED 785
           +  HL  +   +  LAS LKV    V  RV  + E  R  +    + ++           
Sbjct: 571 SFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAA 630

Query: 786 LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
               +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V  
Sbjct: 631 AGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAA 690

Query: 845 DLLD---RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +         A DL +  A  +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 691 NPAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 744


>gi|83316024|ref|XP_731046.1| alanyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490961|gb|EAA22611.1| alanyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 1218

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 270/1041 (25%), Positives = 464/1041 (44%), Gaps = 158/1041 (15%)

Query: 2    SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
                 +R  F+ +F+   H ++ S+S+IP ND TL+FTN+GM  FK IF G         
Sbjct: 190  MTSEQVRNNFINYFKNKNHTVVDSASVIPYNDNTLLFTNAGMNQFKKIFLGNVDKNSDLG 249

Query: 59   --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I+ AWDLLT 
Sbjct: 250  KLKRCVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIEYAWDLLTN 309

Query: 117  EFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             + ++  RLY+T +  D+         EA K+W K   L   +I+     DNFW MAETG
Sbjct: 310  VYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDEKRILPFGMKDNFWEMAETG 367

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN+VFMQ+ +   +    LP   IDTG
Sbjct: 368  PCGPCSEIHYDRI-GNRDASDLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPSPCIDTG 426

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-----------TGMKYEGNNIVNHRVIV 276
            MGLER+ ++LQ   +NYD DLF  + +  +++              +        +RVI 
Sbjct: 427  MGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNNSIPSYQGKINEEDPDKIDYAYRVIS 486

Query: 277  DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEM 333
            DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   +        L+ ++C  +
Sbjct: 487  DHIRCATIAISDGCIPSNEGRNYVIRRIIRRAVRVGKQVFNIKSNVLWFYKLVDSVCKIL 546

Query: 334  GSAYPEL--IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDV 386
            G+ + +L   +    I+  +  E+  F KTL++G+   + ++          + + +G  
Sbjct: 547  GNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKIIKKCHQNPSNSNNLFSGKD 606

Query: 387  AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
            AF LY ++G P+D+++ +   + +  +++  FN   ++ +  +  ++  +          
Sbjct: 607  AFDLYTSYGFPIDLIEIMCEEKNVK-LNMEEFNTLFKKHQLISDTNNFKINK------VI 659

Query: 447  SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA---IVQQGEIVE 503
             L  +        Y++L    + K +     +       N  +  +K+   I+  G  ++
Sbjct: 660  DLPVEKAHEIKCKYNVLPTIDYHKYNWNNTFEDIKSKEENKNNLRLKSSVQIIYDGNFLD 719

Query: 504  EAV-----------------SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            E V                   +K  ++  +T FY E GGQ+ DTG    + ++ Q+ +V
Sbjct: 720  ELVYTDNETKEPSSCEKTENEQKKYALILKETNFYYENGGQIYDTGFIQNESMKFQVLNV 779

Query: 547  QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            QK      +H  ++  G ++    +   +D++ R+ ++ NH+ATHLL+ AL  +L   ++
Sbjct: 780  QK-MNDYILHIGVLLSGSIKKNDVIETVVDFERRKLIACNHTATHLLNFALRKVLEDQMN 838

Query: 607  ----------------------------------------------QNGSCITPDGLRFD 620
                                                          Q GS +  + LRFD
Sbjct: 839  QTKNKCDNKDENKKGSLEDSSAIKNKLEGNSSCNNNSNGSSIFNCEQKGSLVDDEKLRFD 898

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
             +  + I    L  IE  +N+I+ + L V  + M+  ++    G  A+    Y+D+V VV
Sbjct: 899  FSFIQNINMDVLNKIETEINNIVKEELDVSIKTMDLTESKKIKGIRAIFEEDYSDKVNVV 958

Query: 680  SVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +      V            S  LCGGTH+ +T  I    I SE SI  GI RI A+T 
Sbjct: 959  FISKNADNVLNNLDINYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGIHRINAVTN 1018

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE------------IWEEYRKLQ----- 771
            ++A       D+ +            N +  V+             + ++ + L+     
Sbjct: 1019 KKAEEINKKFDDLVAKYKHVFDDPNENKLTDVQNYKRILKEDKFLPLIKKNKILEDLEII 1078

Query: 772  -------LIHAKRKL---QLNVEDLSCHKIADVNFM-SHIISEVDSKE-LKSVMDALQKK 819
                     +A+++L    + +  L   +  D   +   + +E++  + +   +     K
Sbjct: 1079 EKDIVEKKKNAQKELFNKAMGLGKLYATENKDNILLDIKLFTEINGNQKVLEKVGQAYTK 1138

Query: 820  IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR-PHMAQS 877
                +     I  E     ++ + + L  +   A    +   + +GG  GGG+      +
Sbjct: 1139 ANKNLSYFFIIHDENNTYCVLEIRDSLKGKEMQAETFMKQVMESVGGHSGGGKNKAFGSA 1198

Query: 878  GGPNGNKADQAIAGVASFLKK 898
            G   G    QA       +KK
Sbjct: 1199 GKDKGTAIKQA---AEEVIKK 1216


>gi|269114905|ref|YP_003302668.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma
           hominis]
 gi|268322530|emb|CAX37265.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma
           hominis ATCC 23114]
          Length = 887

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 275/938 (29%), Positives = 462/938 (49%), Gaps = 96/938 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR  +L+FF+  GH ++PS SLIP NDP+L++ NSG+   K+ F+G++ P  + 
Sbjct: 1   MLTSKEIRKMWLDFFKSKGHLVVPSKSLIPQNDPSLLWINSGVATLKDYFSGKKIPPAKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI   ++ +     L
Sbjct: 61  ITNSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEAIAFGYEFIFNVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           +++ +YIT Y ED++ +  W   +G+    +I+ + + NFW + + GPCGP +EIF+D+G
Sbjct: 117 NKQNIYITYYSEDKDTYNYWIS-NGIDPSHMIKGSRDTNFWDVGQ-GPCGPDTEIFYDRG 174

Query: 181 ECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L  +  E +RYIEIWN+VF QF    +     L   +IDTG GLER+ ++L
Sbjct: 175 TKYDTRGIELLENDIENDRYIEIWNIVFSQFNNDGENNYTELATKNIDTGAGLERITSIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q+   N+D DLF  +I A+E++T   Y+ NN               ++I DH+R+S   I
Sbjct: 235 QDAPTNFDTDLFLPIIHATEKLTNKHYDINNYFTKEPIQMKINTQFKIIADHIRASVNAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGY-TEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG+ P+N GRGY++RR++RRA      LG   +  +  L+  +   +            
Sbjct: 295 SDGVKPSNIGRGYIIRRLIRRAYRAGISLGITQKAFLYELVQIVKDSLIYDI-----DVE 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            +++ +  E+  F KT++ G  LL+  +    K+  ++  +AFK++DT+G P+++ ++IL
Sbjct: 350 EVKKVILDEENLFAKTINEGEKLLNQEIE---KNGTIDVKIAFKMFDTYGFPIELTREIL 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLR 464
             + +  ID+  FN+ L++ + ++R    G      +K+  SL       ++F+GYD  +
Sbjct: 407 QEKNI-DIDMNEFNEFLKQHQEKSR----GNIEAGMQKVINSLSLITDKISEFVGYDHTK 461

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +S +  ++   E +  A   +   ++ D+TPFYA +
Sbjct: 462 T-----------------------TSKILYLLNSEEKINNAGEDEVSYLILDKTPFYATS 498

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D G  +    R+++ DV K      VH   V +G + +   +   +D   R   +
Sbjct: 499 GGQNHDEGYILQGNNRIEVLDVFKDKYWNHVH---VVKGKINSNEPVQCFVDEDKRINFA 555

Query: 585 INHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            NHS+THL+  AL     +  + Q GS IT +   FD       T  E+K IE  +   I
Sbjct: 556 RNHSSTHLMFSALRETYPNEIIKQLGSNITYEHFTFDFGLDHRPTKEEIKLIEHKMRQYI 615

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           A+++     I + + A   GA   +   +Y+D   +  VE+E     +  LCGGTHV  +
Sbjct: 616 ARDVKRNYIITSLKKAEEMGAYMTIDESEYHDANYIRVVEFEG---ITKDLCGGTHVPHS 672

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQ-DEKLKSLASFLKVSQG------ 754
           G I    IV+  S   GI R+  +T     R +L+ +  EK K L + +K +Q       
Sbjct: 673 GIIEDFKIVAVDSKGTGIYRLRVVTSYDLVRKYLLSEIQEKQKILDTLIKNNQKLNEGYN 732

Query: 755 ---------NVVGRVEEIWEEYRKLQLI------HAKRKLQLNVEDLSCHKIADVNFMSH 799
                    N    +EE+ EEY K +           ++ Q    DLS +    +N    
Sbjct: 733 FKYTKEIISNKTSDLEELLEEYDKCEEKLRNDYRALLKQKQSEDVDLSLYNYETINDKKV 792

Query: 800 -IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            ++  ++   +K V  +L++     II+++  SK+      +        ++++  + + 
Sbjct: 793 FLLINIEQSLIKKVSISLREANPDSIIIILNKSKQDSYYFAVA-----SKKYDSNAIFKN 847

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             KVL    GGG   ++Q    +  K ++ I  + S L
Sbjct: 848 LGKVLNIH-GGGNAIISQGSLASNLKQEEIIEIIKSNL 884


>gi|289575261|ref|ZP_06455488.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289539692|gb|EFD44270.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85]
          Length = 750

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 259/774 (33%), Positives = 390/774 (50%), Gaps = 64/774 (8%)

Query: 156 TNDNFWSMAETGPCGPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
             DN+WSM   GPCGP SEI++D+G    P G P  SE+  RY+E+WNLVFMQ E+    
Sbjct: 1   MADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGT 58

Query: 215 ERF------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--- 265
            +        LP+ +IDTGMG+ER+A VLQ+  N Y+ DL + +I    +V    Y+   
Sbjct: 59  TKEDYQILGPLPRNNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGN 118

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
             + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR +  A+LLG    ++  L
Sbjct: 119 HEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDL 178

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILN 383
           +  +   MG +YPEL+     I     +E+  F +TL  G  L + V S   K    +L+
Sbjct: 179 MATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLS 238

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G  AF L+DT+G P+++  ++    GL  +D I F + + EQR RA+A +        + 
Sbjct: 239 GSDAFTLHDTYGFPIELTLEMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADL 297

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
             +      GAT+F G+D LR                         + +  I   G+ V 
Sbjct: 298 SAYRELVDAGATEFTGFDELRS-----------------------QARILGIFVDGKRVP 334

Query: 504 E--------AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAE 551
                    A  GQ+VE+V D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+
Sbjct: 335 VVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAK 394

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            ++VH   VE G      +++  +D   RR  +  HS TH++H AL  +LG +  Q GS 
Sbjct: 395 TLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSL 454

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
             P  LRFD     P+T  +   +E+  N+ +  +  V T     + A A GA AL G  
Sbjct: 455 NRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGES 514

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           Y D VRVV +    GG  S  LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +
Sbjct: 515 YPDEVRVVEM----GGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDS 570

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDL 786
             HL  +   +  LAS LKV    V  RV  + E  R  +    + ++            
Sbjct: 571 FRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAA 630

Query: 787 SCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
              +I +V  ++  +S  + + +L+S++  ++ K+ S   ++  I++ +  +V   V  +
Sbjct: 631 GAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAAN 690

Query: 846 LLD---RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                    A DL +  A  +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 691 PAAQDLGIRANDLVKQLAVAVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 743


>gi|124514064|ref|XP_001350388.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23615805|emb|CAD52797.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1408

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 265/1004 (26%), Positives = 448/1004 (44%), Gaps = 146/1004 (14%)

Query: 2    SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             +   +R  F+ +F K  H ++ SSS++P ND TL+FTN+GM  FK IF G         
Sbjct: 389  MSAEEVRNNFINYFHKKNHTIIESSSVVPYNDNTLLFTNAGMNQFKKIFLGNADKNSDLG 448

Query: 59   --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I  AWDLLT 
Sbjct: 449  KLKRAVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESISFAWDLLTN 508

Query: 117  EFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             + ++  RLY+T +  DE         E  K+W K   +S D+I+     +NFW MAETG
Sbjct: 509  VYKINPDRLYVTYFGGDENLSTCPADHETKKIWMKY--ISEDRILPFGLKENFWEMAETG 566

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN+VFMQ+ +   +    LP   IDTG
Sbjct: 567  PCGPCSEIHYDRI-GNRDASSLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPFPCIDTG 625

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQV----------TGMKYEGNNIVNHRVIVD 277
            MGLER+ ++LQ   +NYD DLF+ + +  +++             +        +RVI D
Sbjct: 626  MGLERITSILQNVDSNYDTDLFQPIFKQIKELFPYLPNYEGKINEQDVDKIDTAYRVISD 685

Query: 278  HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMG 334
            H+R  +  I+DG LP+NEGR YV+RRI+RRA+ + + +   +        L+ ++C  +G
Sbjct: 686  HIRCVTVAISDGCLPSNEGRNYVIRRIIRRAIRFGKQVFNIKSNVLWFYKLVDSVCFILG 745

Query: 335  SAYPELI--QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
            + + +L        I+ T++ E+  F KTL++G+     ++    K+ I +G  AF LY 
Sbjct: 746  NTFKDLQNPDKINFIKNTIKQEEMVFNKTLEKGVEQFHKIIKKNTKNNIFSGKDAFDLYT 805

Query: 393  THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
            + G P+D++Q +   +    +D+  FN   ++ +  +  ++  +        +F +  + 
Sbjct: 806  SFGFPIDLIQIMCEEKSF-NLDLQEFNDLFKKHQLVSDTNNFKINK------FFDIPVEK 858

Query: 453  GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA------- 505
                   +++       K +    C     +      + V+ I      ++         
Sbjct: 859  SHELKNVHNINPTVDHFKYEWNNNCANDGDNKDIKFETYVQVIYDGNNFLDNFTLPSNND 918

Query: 506  -----------VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
                        + +K  ++  +T FY E GGQ+ DTG    D ++ Q+ +VQK      
Sbjct: 919  EQVLEKEKSIEENKKKYALILKETNFYYENGGQIYDTGIIQNDNMKFQVLNVQK-INEYV 977

Query: 555  VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS-------- 606
            +H  +  +G +     +   +D+  R+ ++ NH+ATH+L+  L  +L    +        
Sbjct: 978  LHIGVFLKGYVSKNDKVQTIVDFDRRKLVACNHTATHMLNFMLRKVLTEKYTNSGKSSKT 1037

Query: 607  ------------------------------------QNGSCITPDGLRFDVTHSKPITSA 630
                                                Q GS +  + LRFD +  + I   
Sbjct: 1038 HEGNNEKHEMSENDINSNNNYDNNKEEKGFSIFTCEQKGSLVDDEKLRFDFSFIENINID 1097

Query: 631  ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV- 688
             +  IE+ +N +I + L V  + M+ +++    G  A+    Y D+V VV +  +   + 
Sbjct: 1098 AITKIENEINKLIKEELNVTVKTMDLDESKKIKGIRAIFEEDYADKVNVVFINKDVNNIL 1157

Query: 689  ----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                      HS  LCGGTH+ +T  I    + SE SI  GI RI A+T ++A       
Sbjct: 1158 NNMNIDYTYLHSIELCGGTHIGNTKLIRKFLVTSEESIGKGIYRITAVTNKKADEIEKTF 1217

Query: 739  DEKLKSLASFLKVSQGNVVGRVEE------------------IWEEYRKLQLIHAKR--- 777
            ++        L+    N +  V+                   I +E  +++    ++   
Sbjct: 1218 NDLYDKYKHVLQEPNENKLADVQNYKRTLKENKFLPYIKKYHILQELEQIEKTIVEKTKN 1277

Query: 778  -------KLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLV 828
                   K     +D +     ++        E+  + K L+ ++ +   K    +    
Sbjct: 1278 MQKELFNKATNIGKDYAVQDKNNILLDIKFFDEIKGNQKVLEKIVQSY-SKNNKNLSYFF 1336

Query: 829  GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871
             I  E     ++ V E L ++   A    +   K + G  GG +
Sbjct: 1337 IICDENNTYCVLEVKEALKNKNVQADLFMKEIMKSVLGHSGGSK 1380


>gi|71893553|ref|YP_278999.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 880

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/911 (29%), Positives = 445/911 (48%), Gaps = 88/911 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +
Sbjct: 1   MSANKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD
Sbjct: 61  VNSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G 
Sbjct: 117 PKNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGP 174

Query: 182 CI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ
Sbjct: 175 KFDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I 
Sbjct: 235 DGPTNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIN 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +         I
Sbjct: 295 DGVQPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTLDYRF-----DIPTI 349

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + + +E+E F KTL+ G  LL+  L  + K++I      FKL++T+G P+++ ++IL  
Sbjct: 350 SKIILNEEENFAKTLEIGYNLLESQL-KINKNQIKPV-TVFKLFETYGFPVELTKEILAE 407

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           + +        +Q +E Q   ++       +G  + I    + K   + FIGY       
Sbjct: 408 KNI----DFDLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGYHTH---- 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                               + + +  +  + E V E        V+F++TPFYA AGGQ
Sbjct: 460 -------------------HIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQ 500

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I +   ++I DV K      +H   V +G +     + L +D +NR  L  NH
Sbjct: 501 KHDQGWIIQNNSTIEILDVFKDKFLNNIH---VFKGKIVKNQPVFLKLDTKNRLNLERNH 557

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q +
Sbjct: 558 SGTHLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKI 617

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                + N E+A    A   L   +Y D   +  V ++     ++ LCGGTH+ +T  + 
Sbjct: 618 KRKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLE 674

Query: 707 LLYIVSESSIRAGIRRIEAITGQ-RARSHLMGQ-DEKLKSLASF----------LKVSQG 754
              I+S  S  +GI RI A+T   +    L G+  E L  +++             ++  
Sbjct: 675 KFTILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALKNKIKKIEPNFGLNLP 734

Query: 755 NVVGRVEEIWEEYRKLQ-------LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806
           N+V  +E+ ++  +K++           K +L++   +L  +KI ++   S  +   +  
Sbjct: 735 NLVD-LEQQFDYLKKIEDDLRIYYKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPL 793

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             LK +    +++      +L           LI+V+  +L    A +        +  G
Sbjct: 794 HNLKQIAATWREQNPRISFILGANLVNN--EFLIIVSSAIL----ASNQILEKIFEIFTG 847

Query: 867 GGGGRPHMAQS 877
            GGG   +AQ 
Sbjct: 848 SGGGNYKIAQG 858


>gi|72080540|ref|YP_287598.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 880

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/911 (29%), Positives = 445/911 (48%), Gaps = 88/911 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + +
Sbjct: 1   MSANKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD
Sbjct: 61  VNSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G 
Sbjct: 117 PKNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGP 174

Query: 182 CI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ
Sbjct: 175 KFDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIA 287
           +   NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I 
Sbjct: 235 DGPTNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIN 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +         I
Sbjct: 295 DGVQPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRF-----DIQTI 349

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            + + +E+E F KTL+ G  LL+  L  + K++I      FKL++T+G P+++ ++IL  
Sbjct: 350 SKIILNEEENFAKTLEIGYNLLESQL-KINKNQIKPV-TVFKLFETYGFPVELTKEILAE 407

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           + +        +Q +E Q   ++       +G  + I    + K   + FIGY       
Sbjct: 408 KNI----DFDLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGYHTH---- 459

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                               + + +  +  + E V E        V+F++TPFYA AGGQ
Sbjct: 460 -------------------HIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQ 500

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  I +   ++I DV K      +H   V +G +     + L +D +NR  L  NH
Sbjct: 501 KHDQGWIIQNNSTIEILDVFKDKFLNNIH---VFKGKIVKNQPVFLKLDTKNRLNLERNH 557

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S THLL  +L    GS + Q GS    + L FD   ++  +  E+KS+E+ +N  I Q +
Sbjct: 558 SGTHLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKI 617

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                + N E+A    A   L   +Y D   +  V ++     ++ LCGGTH+ +T  + 
Sbjct: 618 KRKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLE 674

Query: 707 LLYIVSESSIRAGIRRIEAITGQ-RARSHLMGQ-DEKLKSLASF----------LKVSQG 754
              I+S  S  +GI RI A+T   +    L G+  E L  +++             ++  
Sbjct: 675 KFTILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALKNKIKKIEPNFGLNLP 734

Query: 755 NVVGRVEEIWEEYRKLQ-------LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDS 806
           N+V  +E+ ++  +K++           K +L++   +L  +KI ++   S  +   +  
Sbjct: 735 NLVD-LEQQFDYLKKIEDDLKIYYKKLLKSQLRIVKSELDANKIIEIGKFSFYLDFNLPL 793

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
             LK +    +++      +L           LI+V+  +L    A +        +  G
Sbjct: 794 HNLKQIAATWREQNPRISFILGANLVNN--EFLIIVSSAIL----ASNQILEKILEIFTG 847

Query: 867 GGGGRPHMAQS 877
            GGG   +AQ 
Sbjct: 848 SGGGNYKIAQG 858


>gi|294155487|ref|YP_003559871.1| alanine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600170|gb|ADE19666.1| alanine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 876

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 265/932 (28%), Positives = 449/932 (48%), Gaps = 95/932 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L FF+K  H ++P+ SL+P ND +L++ NSG+   K+ F+G++ P  + +
Sbjct: 1   MDSKKIRQDWLNFFEKKNHLIVPTKSLVPVNDNSLLWINSGVATLKDYFSGKKIPPSKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+ A + L     LD
Sbjct: 61  TNSQKAIRT----NDIENVGITARHHTLFEMLGNFSIGDYFKKEAIEFAAEYLLTILKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY T + ED E  +LW    G   + +I  T + NFW +  +GPCGP +EIF+D+G+
Sbjct: 117 KNRLYFTYFHEDLETKQLWIN-CGFDPEHMIPGTRDTNFWEVG-SGPCGPNTEIFYDRGQ 174

Query: 182 CIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +RY+EIWN+VF  +    +     L + +IDTG GLER+ +V+Q
Sbjct: 175 KYDSRGIELLKNDIENDRYVEIWNIVFSTYNSDGEGNYTELKQKNIDTGAGLERIVSVMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLIA 287
           +   N+D DLF  +I   E+ T  +Y+ NN               ++I DH+R+ S  IA
Sbjct: 235 DAPTNFDTDLFLPIIHEIEKYTSYRYDINNYFVKNKDQVEINSCFQIIADHIRTVSNAIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKLL 346
           DG   +N GRGY++RR++RR +  +  L  T+   +  L+  +   +   Y  +      
Sbjct: 295 DGAKISNIGRGYIIRRLIRRCVYKSMKLKVTDSIFLYKLVKVVKQSLPFEYDVVK----- 349

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ +++E++ F KT+++G +LL+  +S      I +G  AFKL++T+G P+++  +IL 
Sbjct: 350 VEKAIKAEEQLFAKTIEKGKILLEKNIS--KGSSIFSGKTAFKLFETYGFPIELTMEILA 407

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            + +  ID+  F +A +E    A A      +G  + I      K     F+GY   +  
Sbjct: 408 DQKV-NIDMNEFEKAKQEH---AEASKTKKTAGMDKVINSLTLLKSKIDIFVGYTDTKT- 462

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                 +S +  +    + ++E  S     +V D+TPFYA +GG
Sbjct: 463 ----------------------TSKILKLFNSNKEIKE--SNDTAFLVLDKTPFYATSGG 498

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G  + +  +++I DV K   G  +H   V +G +     +   +D   R  L  N
Sbjct: 499 QRHDKGYILQNKNKIEIIDVFKDKHGNHIH---VIKGKINKNDPVECFVDETIRLGLERN 555

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS THLL+ AL  +LG+H+ Q GS    + L FD+      +  ++K IE+ VN  I ++
Sbjct: 556 HSGTHLLYCALRNVLGNHIQQLGSDNNEERLTFDLPADNKPSDEKIKEIENLVNQYIKED 615

Query: 647 LPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                  M+ E A    A   L   +Y D+  V  V++++    ++ LCGGTH+S+T ++
Sbjct: 616 ATRNYLQMSIEKAKEMNAILTLEEGEYMDKNNVRIVKFDN---ITADLCGGTHISNTAKL 672

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-----RV 760
               IV  S   AGI RI+A+T  +  +  +  +  +K + + L  +   +V      + 
Sbjct: 673 ESFKIVEFSKKAAGIFRIKALTSNKLVNDYLTNE--IKKVKNELNNNVEKLVKLDNNFKA 730

Query: 761 EEIW---------------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           + +                EE +      +K+  +++  D    K  +    S    E D
Sbjct: 731 KNVESKNLNVYLDNLISYNEEIKNKLKETSKQMHKIDDFDYETVKYENSKNASFAFVESD 790

Query: 806 S-KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           +   +K +   L++K    I ++   +       +         + N+  L +   K   
Sbjct: 791 NIANIKQISLTLREKNPETINIVFSKNNNDFTIAIAS------KKINSNLLLQSIFKHFN 844

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G GGG    +     + +  ++ ++ +   L
Sbjct: 845 -GKGGGNEIFSMGKCQSTSS-EELLSYIKELL 874


>gi|324504252|gb|ADY41836.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 835

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 262/835 (31%), Positives = 409/835 (48%), Gaps = 72/835 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKP 56
            + S +R +FL+FF   GH  +PSSS++P +DP+L+F  +GM  FK+I  G       + 
Sbjct: 19  MSSSEVRQSFLKFFMDRGHVHVPSSSIVPSDDPSLLFVTAGMNQFKSIILGVCGADDWRS 78

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             + V   QKC+RAGGKHNDL++VG    HHTFFEMLGN+SFG YFK  A Q AW+ LT+
Sbjct: 79  SLRRVVNSQKCLRAGGKHNDLNDVGGDLSHHTFFEMLGNWSFGDYFKAEACQFAWEYLTE 138

Query: 117 EFDLDQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L   RLY+T Y +D E          ++W+ + GL   +I+R    +NFW MA+TGP
Sbjct: 139 VLRLPPDRLYVTYYGDDHELSLGDDIECREIWRNL-GLHPSRILRFGVEENFWVMADTGP 197

Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
           CGPCSEI +D      GG   S   +      +EIWNLVFMQ+ +        LP   ID
Sbjct: 198 CGPCSEIHYD----FIGGRDASHLVNTSDPSVVEIWNLVFMQYNRDASGRIVSLPCRHID 253

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIV 276
            GMG ER A ++Q+  +NYD D+F  LI    + T         G          +R I 
Sbjct: 254 CGMGFERTAAIMQQVQSNYDSDIFSPLISEISKYTSLGGYGGRIGQADIYGRDTAYRTIA 313

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGS 335
           DHLR+    I+DG+ P   GRGYVLRR++RRA   + + L     L+  L+P   + +  
Sbjct: 314 DHLRALCVAISDGVRPDAAGRGYVLRRMLRRAARMSSVTLQADRGLLAALVPTYTSHLAR 373

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTH 394
           ++PE+     +IE+ +  E+ +F + +DRG  L        L K    +GD+A+ L++TH
Sbjct: 374 SFPEVANNAKVIEDIISLEESQFWRVVDRGERLFAEEAEKSLLKKIPFSGDIAWYLHNTH 433

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+++   +   R L+ ID+  F +   + +   R           +  W ++      
Sbjct: 434 GFPIELTSMLAEERNLS-IDLDRFEECRNQAKMLRRVR-------ANDTCWRNVD----- 480

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           T  +  D +  +  M +                 + I+    ++G  +E+  +  +  VV
Sbjct: 481 TVRLCQDGMTRTCDMGKYEYAKMDDGSYVFPERQAKILAIFSKEGIRLEQLATNMEGCVV 540

Query: 515 FDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
            D+T FYAE GGQL D G     +G  + + D  +K +          +  L  E +++ 
Sbjct: 541 VDETIFYAEQGGQLADNGVLCSSNGEEVFVVDDVQKKDDFVFLIGHSTQD-LTVETNVIQ 599

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID   R QL   H+ THLL  AL  + G  V Q GS ++PD +RFD +    ++  +++
Sbjct: 600 KIDLNRRLQLMRAHTGTHLLLDALRILFGPAVYQRGSLVSPDRIRFDCSLEHALSQGQIR 659

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASG------AAALLGTKYNDRVRVVSVEYEDGG 687
            +E  ++++I  + PV T I+      A         A+L  T  N  +RVV++     G
Sbjct: 660 EVERVLSEVIESDQPVFTEIVPHTQLSAIQNIQSTITASLTETASNGLIRVVTINAPVNG 719

Query: 688 --VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
               +   C GTHV +T ++    +VS+ S+ +G+RR+ A+TG  AR  +    E    L
Sbjct: 720 KSARAVECCCGTHVLNTRDLGAFVVVSDRSLGSGVRRLTALTGTAARLAIEKGMELRTRL 779

Query: 746 ASF----------------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                              LK S   ++ R +E++   R+L+    +++ +   E
Sbjct: 780 GKLNSDSHSGGELIRFEKELKSSVVPILLR-DELYSSLRQLKKASLRKRRRTANE 833


>gi|148887013|sp|Q4AAD3|SYA_MYCHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|144227505|gb|AAZ44288.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 883

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/910 (29%), Positives = 445/910 (48%), Gaps = 88/910 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 I---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+
Sbjct: 179 FDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I D
Sbjct: 239 GPTNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIND 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +         I 
Sbjct: 299 GVQPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTLDYRF-----DIPTIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + + +E+E F KTL+ G  LL+  L  + K++I      FKL++T+G P+++ ++IL  +
Sbjct: 354 KIILNEEENFAKTLEIGYNLLESQL-KINKNQIKPV-TVFKLFETYGFPVELTKEILAEK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +        +Q +E Q   ++       +G  + I    + K   + FIGY        
Sbjct: 412 NI----DFDLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGYHTH----- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              + + +  +  + E V E        V+F++TPFYA AGGQ 
Sbjct: 463 ------------------HIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQK 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I +   ++I DV K      +H   V +G +     + L +D +NR  L  NHS
Sbjct: 505 HDQGWIIQNNSTIEILDVFKDKFLNNIH---VFKGKIVKNQPVFLKLDTKNRLNLERNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  +L    GS + Q GS    D L FD   ++  +  E+KS+E+ +N  I Q + 
Sbjct: 562 GTHLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIK 621

Query: 649 VVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               + N E+A    A   L   +Y D   +  V ++     ++ LCGGTH+ +T  +  
Sbjct: 622 RKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEK 678

Query: 708 LYIVSESSIRAGIRRIEAITGQ-RARSHLMGQ-DEKLKSLASF----------LKVSQGN 755
             I+S  S  +GI RI A+T   +    L G+  E L  +++             ++  N
Sbjct: 679 FTILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALKNKIKKIEPNFGLNLPN 738

Query: 756 VVGRVEEIWEEYRKLQ-------LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
           +V  +E+ ++  +K++           K +L++   +L  +KI ++   S  +   +   
Sbjct: 739 LVD-LEQQFDYLKKIEDDLRIYYKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPLH 797

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            LK +    +++      +L           LI+V+  +L    A +        +  G 
Sbjct: 798 NLKQIAATWREQNPRISFILGANLVNN--EFLIIVSSAIL----ASNQILEKIFEIFTGS 851

Query: 868 GGGRPHMAQS 877
           GGG   +AQ 
Sbjct: 852 GGGNYKIAQG 861


>gi|148887012|sp|Q4A8G4|SYA_MYCH7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|144575316|gb|AAZ53575.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 883

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/910 (29%), Positives = 445/910 (48%), Gaps = 88/910 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 I---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L  +  E +R+IEIWN+VF +F    +Q    L   +IDTG G ER+ ++LQ+
Sbjct: 179 FDSRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIAD 288
              NYD DLF  +I   E+ T  +Y+  N             + R+I DH+R+ +  I D
Sbjct: 239 GPTNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAIND 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG + P +  L+  +   +   +         I 
Sbjct: 299 GVQPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRF-----DIQTIS 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + + +E+E F KTL+ G  LL+  L  + K++I      FKL++T+G P+++ ++IL  +
Sbjct: 354 KIILNEEENFAKTLEIGYNLLESQL-KINKNQIKPV-TVFKLFETYGFPVELTKEILAEK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +        +Q +E Q   ++       +G  + I    + K   + FIGY        
Sbjct: 412 NI----DFDLSQLVEFQEKHSQISRAKKTTGMQKVINSLTQIKAKISDFIGYHTH----- 462

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                              + + +  +  + E V E        V+F++TPFYA AGGQ 
Sbjct: 463 ------------------HIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQK 504

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  I +   ++I DV K      +H   V +G +     + L +D +NR  L  NHS
Sbjct: 505 HDQGWIIQNNSTIEILDVFKDKFLNNIH---VFKGKIVKNQPVFLKLDTKNRLNLERNHS 561

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL  +L    GS + Q GS    + L FD   ++  +  E+KS+E+ +N  I Q + 
Sbjct: 562 GTHLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKIK 621

Query: 649 VVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               + N E+A    A   L   +Y D   +  V ++     ++ LCGGTH+ +T  +  
Sbjct: 622 RKYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEK 678

Query: 708 LYIVSESSIRAGIRRIEAITGQ-RARSHLMGQ-DEKLKSLASF----------LKVSQGN 755
             I+S  S  +GI RI A+T   +    L G+  E L  +++             ++  N
Sbjct: 679 FTILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALKNKIKKIEPNFGLNLPN 738

Query: 756 VVGRVEEIWEEYRKLQ-------LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSK 807
           +V  +E+ ++  +K++           K +L++   +L  +KI ++   S  +   +   
Sbjct: 739 LVD-LEQQFDYLKKIEDDLKIYYKKLLKSQLRIVKSELDANKIIEIGKFSFYLDFNLPLH 797

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            LK +    +++      +L           LI+V+  +L    A +        +  G 
Sbjct: 798 NLKQIAATWREQNPRISFILGANLVNN--EFLIIVSSAIL----ASNQILEKILEIFTGS 851

Query: 868 GGGRPHMAQS 877
           GGG   +AQ 
Sbjct: 852 GGGNYKIAQG 861


>gi|284931130|gb|ADC31068.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. F]
          Length = 902

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 261/936 (27%), Positives = 432/936 (46%), Gaps = 98/936 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FF+   HE++ S SL+P NDP+L++ N+G+   K  F+G+E P+   + 
Sbjct: 6   SGSQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q+C+RA    ND++NVG T+RHHT FEMLGNFS G YFK+ AI+  ++LLTK + L++
Sbjct: 66  NSQRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT+Y++D +AF  W    G+    IIR     NFW +  +GPCGP +EI++D+GE 
Sbjct: 122 DKLYITIYEDDNDAFNYWVD-QGIDPHHIIRCDKKRNFWDLG-SGPCGPSTEIYYDRGEK 179

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 G        E +RYIE+WN+VF QF          L + +IDTG  LER A +L
Sbjct: 180 YDPNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELVRKNIDTGASLERFACIL 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRSSSFLI 286
           Q+   NYD DL+  +I+  E+ T  KY           E + +   RVI DHL+   F I
Sbjct: 240 QDVPTNYDTDLYLPIIRTIEKHTNHKYVVDHYFSKDQSEQDVLRAFRVIADHLKCGVFAI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+LP  + R Y++R+++RRA  YA+ L      ++  +  +       +  LI  K +
Sbjct: 300 ADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNKEI 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + + +E   F KTLD G  + +           +  ++ FKL +T+G PLD+++++  
Sbjct: 360 VIQAITNEANNFTKTLDYGFEIFNEA----KTTNNITAEMIFKLVETYGFPLDLIKELSA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D+  F +  ++ +  ++A++  +G     +                       
Sbjct: 416 EAKIK-LDLDGFEELFKKHQEISKANNGEVGLKKQNENLL-------------------- 454

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAG 525
                  K   Q       N + + V AI       V++   G     VF+ TP YA +G
Sbjct: 455 -------KFETQSKFYYDKNNIKTKVVAIFDDKFNPVDQIEVG-SGWAVFESTPIYATSG 506

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ  D G C     + +   +V K      +HH   ++        + L  D   R+ + 
Sbjct: 507 GQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLHH--FKKASFWLNEKVELMHDENWRKLVR 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHS  H+LH  L   +   + Q+G+  +      D  +   +T  +L  IE  +  +IA
Sbjct: 565 KNHSLEHILHATLKNTINETIKQSGAFKSAAKATLDFNYPTKLTDEDLDKIETKMRQVIA 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV    ++ E +    A A    +Y     +  ++    G +S  LCGGTHV +T E
Sbjct: 625 DKIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIKI---GDYSVELCGGTHVDNTKE 681

Query: 705 IMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASF--------------- 748
           I   +I    S+ AG  RIE I+  +   ++L+ +  ++K   +                
Sbjct: 682 IEECFITDLYSLGAGRWRIEIISSYETIYNYLVDKQNEIKQEKNHMFNELGNYDLTHYLD 741

Query: 749 ---------LKVSQGNVVGRV---EEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADV 794
                    L  S  ++   +   E+I EEY+ ++L   K+K +     +        + 
Sbjct: 742 FSKKLHSFNLPTSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIKKLALDNLEH 801

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +     + + K L      L  +    +   +  S + K + LI + ++  D+ NA  
Sbjct: 802 KIVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKS-DNKINYLIGI-KNATDKLNAKL 859

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGG---PNGNKADQ 887
           L      V+ G  GGG+ + AQ G     +  K   
Sbjct: 860 LIDKV-NVMFGAKGGGKQNFAQGGFSTDKDVGKLKA 894


>gi|71894391|ref|YP_278499.1| alanyl-tRNA synthetase [Mycoplasma synoviae 53]
 gi|83305851|sp|Q4A633|SYA_MYCS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|71851179|gb|AAZ43788.1| alanyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 878

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 266/930 (28%), Positives = 444/930 (47%), Gaps = 90/930 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  +L+FF+   H ++P  SLIP ND +L++ NSG+   K+ F+G++ P  + +
Sbjct: 1   MNSKEIRKAWLDFFESKNHFIVPPKSLIPVNDNSLLWINSGVATLKDYFSGKKNPPSKRM 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QK +R     ND++NVG T RHHTFFEMLGNFS GGYFK+ AI+ A + +     LD
Sbjct: 61  ANSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGGYFKKEAIEFATEFVLDVLKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RLY T + +D E   LW    G   +++I      NFW + + GPCGP +EIF+D+GE
Sbjct: 117 RSRLYFTYFHDDLETKNLWIS-QGFKEEQLIPGDRKTNFWEVGK-GPCGPNTEIFYDRGE 174

Query: 182 CI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L  +  E +RYIEIWN+VF  +    +     L + +IDTG GLER+ ++LQ
Sbjct: 175 KYDQRGIELLKNDIENDRYIEIWNIVFSTYNSDGEGNYTELNQKNIDTGAGLERIVSILQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLIA 287
           +   N+D DLF  +I   E+ T  +Y+  N               ++I DH+R+    IA
Sbjct: 235 DAPTNFDTDLFLPIIHEIEKYTSYRYKIENYFIKDKAQKEINSYFKIIADHMRTVVNAIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTE-PLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG  P+N  RGY+LRR++RR+   A  L  T+ P +  L+  +   +   Y         
Sbjct: 295 DGEKPSNLSRGYILRRLIRRSYYKAIQLKITKSPFLYKLVDVIKASLPFEY-----DSKK 349

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + E ++ E+  F +T+ +G  +L+  +S     ++  GD+A+KL++T+G P ++ ++IL 
Sbjct: 350 VAEVIKEEEVLFSQTISKGKEILEKFISENSSKDLFPGDLAYKLHETYGFPFELTEEILL 409

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRG 465
            + +  I+   FN A E+    +R           +K+  SL   K    +FIGY+    
Sbjct: 410 QKDIK-INKEEFNLAKEKHIEASR----NQKETGMDKVINSLALIKAKEDEFIGYEHT-- 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               N VS I+  + ++ E+ E   +     ++ D+TPFYA +G
Sbjct: 463 --------------------NSVSKILHLLNEENELSE---NDGTSYLILDKTPFYATSG 499

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    +G++L+I +V K   G  VH  +   G L     +   +D + RR L  
Sbjct: 500 GQKHDRGYIEQNGVKLEILNVFKDKFGNHVHKVV---GKLSKNYPVTCQVDLKIRRGLER 556

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS THL+  AL  + G+ + Q GS    D L FD       T+ E+  +E+ V   I +
Sbjct: 557 NHSGTHLMFCALRNVFGNQIKQLGSDNNEDRLTFDAPFDSKPTNEEILKVENLVKSYIQK 616

Query: 646 NLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +     IM  + A    A   L   +Y D  ++  V +      ++ LCGGTH+ +T  
Sbjct: 617 EVDRQYLIMGIDQAKEINAIMTLEEAEYMDSSKLRIVNFNG---ITADLCGGTHLENTKL 673

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHL--MGQDEKLKSLASF----------LKVS 752
           +    I S     AG+ RI AI+ +          + E ++ L              KVS
Sbjct: 674 LEDFKITSVEKKAAGVYRIRAISSKETIEKYLENQKQELMQELLVLVKKLKDMQFDFKVS 733

Query: 753 QGNVVGRVEEIWE--EYRKLQLIHAKRKLQLNVE----DLSCHKIADVNF-MSHIISEVD 805
               +    +I E      L     K K++ N +    DL+  ++ ++N    ++  E+ 
Sbjct: 734 LDESLELSSQIQEIKNLTNLASEAIKNKIKENSKKISIDLNEIELENINGNYLYLNDEIS 793

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            +E+K++   +++K  + +++L+   + + A            ++N++++ +  A     
Sbjct: 794 KEEIKNLSGVIREKFPNALVILISKGEAQSAISFAS------KKYNSINVLKELANHFEL 847

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             GGG   +A     + ++    +     +
Sbjct: 848 -RGGGNAILAMGSIKDYSQLKTFLKEKYKW 876


>gi|323455368|gb|EGB11236.1| hypothetical protein AURANDRAFT_52432 [Aureococcus anophagefferens]
          Length = 1017

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 278/779 (35%), Positives = 382/779 (49%), Gaps = 58/779 (7%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
            V  +R TF+++F +K GH  +PSS ++P  DPTL+F N+GM  FK IF GQ  P     
Sbjct: 39  TVPRVRDTFVDYFAEKRGHTRVPSSGVVPLQDPTLLFANAGMNQFKPIFLGQAAPGTQLA 98

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VG    HHTFFEMLG++SFG YFK  A   A +LL  
Sbjct: 99  TLERACNSQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGSWSFGDYFKAEATAWAKELLVD 158

Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + LD  R+Y T ++         D EA  LW   +G   +++I  +  DNFW M ++GP
Sbjct: 159 VYGLDMDRMYATYFEGSPEEGLEPDYEARDLWLA-AGFKPEQVIPGSKADNFWEMGDSGP 217

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKMSIDTG 227
           CGPC+E+ +D            + +    IEIWNLVF+QFE+  K +    LP   +DTG
Sbjct: 218 CGPCTELHYDALGGRGDVAHLVNMDDPTVIEIWNLVFIQFERDGKTKRLSSLPAQHVDTG 277

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQAS-----------EQVTGMKYEGNN--IVNHRV 274
           +GLER+  +L +  +NYD D F  L  A+             + G   +  N     +R 
Sbjct: 278 LGLERLVAILNQVPSNYDTDAFSGLFAATLAELPEGSAPYGGLLGDDDKAQNYRDTAYRA 337

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT-E 332
           I DH+R  SF IADG  P+NEGRGYVLRRI+RRA+ Y    LG     M  L PAL    
Sbjct: 338 IADHVRCLSFAIADGARPSNEGRGYVLRRILRRAVRYGLSTLGAEPGFMARLAPALAASH 397

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
            G  YPEL      I E L  E+  F KTL+RG+  LD  L  L   ++L GD AF LYD
Sbjct: 398 FGDYYPELRDELPTIVEVLAEEEATFAKTLERGVKYLDEELDKLEATDVLGGDAAFFLYD 457

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           + G P+D+   +   RG   +D   F  A+  Q  R++A            +   L    
Sbjct: 458 SLGFPVDLTAQMAEERGF-LVDEPGFEAAMRAQVDRSKADRKARAEAALGTVRLEL--GV 514

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI-VKAIVQQGEIVEEAV--SGQ 509
            AT  +G   +  +  +     V      ++    V+ + + A      +V+ A    G 
Sbjct: 515 AATAALGDAGVAPTDALAVGATVADDATEVNGATVVALVAIDAATGDPALVDAATCGPGA 574

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            V VV D TPFYAEAGGQ  D G  +  G  + + DVQ  A  +    A      L    
Sbjct: 575 AVGVVLDATPFYAEAGGQASDRGSLVLGGASVDVIDVQAYAGYVVHTVASGADVALAVGD 634

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +    +D   RR+ ++NH  TH ++HAL   LG  V Q GS    + LRFD +H K + +
Sbjct: 635 AADGVVDGDARRKHAVNHMMTHAVNHALWAELGDGVGQRGSDANDERLRFDFSHGKALKA 694

Query: 630 AELKSIEDNVN-DIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVRVV-------- 679
           A+L ++E  VN + +A    V    +  EDA    A  A+ G  Y D V VV        
Sbjct: 695 AQLAAVEAAVNTEYVADGATVERAKVGLEDAKNIRALRAVFGEAYPDPVNVVAMFPKAAF 754

Query: 680 -----------SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                      S + E     S  LCGG H+          I  E+++  G+RRIEA+T
Sbjct: 755 AGAPTIADVLASPDDEKWDKASIELCGGNHLGDAAAAEYFVITQETAVAKGVRRIEALT 813


>gi|238809909|dbj|BAH69699.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 875

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/905 (30%), Positives = 448/905 (49%), Gaps = 97/905 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L +F+  GH  + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T
Sbjct: 7   TSKEIREKWLRYFESKGHLRVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLT 66

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D 
Sbjct: 67  NSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDP 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++LY+T + ED +  K W +  G+    +I  T + NFW +  +GPCGP +EIF+D+G  
Sbjct: 123 KKLYMTYFAEDLDTKKYWME-QGVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPK 180

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+
Sbjct: 181 YNKRGLELLKKDIENDRYIEIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQD 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIAD 288
              NYD DLF ++I+  E+   +KY+ +N             N +VI DH+R+    IAD
Sbjct: 241 APTNYDSDLFINIIKEIEKYATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIAD 300

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY++RR++RR++     LG     +  L+  +   +   Y      K  + 
Sbjct: 301 GAKVSNVGRGYIIRRLIRRSIYKGMQLGVKGLFLHKLVDVVQDSLPYEY-----DKKPVV 355

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             ++ E+  F +T+++G +LL+  + +  K +I +G+ AF L +T+G P+++  +IL  +
Sbjct: 356 VAIKEEELAFHQTIEKGKLLLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKK 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSK 467
            +  +D+ +F +A E   + +R    G      +K+  SL    G   +FIGY  L    
Sbjct: 414 NIK-VDLKAFEEAKERHANLSR----GEKVNGMDKVINSLALIKGKIGEFIGYTDLES-- 466

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S +  ++   E V+      +  ++ D+TPFYA +GGQ
Sbjct: 467 ---------------------KSKILKLLNNEEEVKSLNG--EGYLILDKTPFYATSGGQ 503

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  +    +++I DV K   G  +H      G +  + ++   +D + R  ++  H
Sbjct: 504 NHDHGFILQGKNKIKILDVFKDKFGNHIHKI---EGKINNKDTVECYVDKEVRIGMARGH 560

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL  AL  +LG H+ Q GS IT + L FD    +  T  ++K IED ++  I QN+
Sbjct: 561 SATHLLFRALVKVLGPHIDQLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNV 620

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                + N + A   GA   +   +Y D   +  V+++     +  LCGGTH+  TG + 
Sbjct: 621 EREYIVTNIKKAKEMGAIMTIDESEYMDPNNIRIVDFKG---ITKDLCGGTHLDRTGILE 677

Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLKVSQ----------- 753
              I       AG+ RI A+   +  + +L   ++ LK  L + +K +Q           
Sbjct: 678 DFKITKVEKKTAGVFRIRAVASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFT 737

Query: 754 ---------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
                     N+   ++++ E+ ++L     K K  +  +  S     +  +  ++  + 
Sbjct: 738 PNKDVEIECANIKKTIDKVHEDIKEL----IKNKSNITFDFDSVQLTKNKKYPYYLNIDF 793

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           DS ++K     L++K    II+L   S      +L+ V   +LD   A  L +  A    
Sbjct: 794 DSSQVKVAAATLREKFPEAIIVLGAKSNN---QILLCVAAKVLD---ANKLFQQIASKTN 847

Query: 865 GGGGG 869
           G GGG
Sbjct: 848 GRGGG 852


>gi|319777240|ref|YP_004136891.1| alanyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|318038315|gb|ADV34514.1| Alanyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 873

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/905 (30%), Positives = 448/905 (49%), Gaps = 97/905 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L +F+  GH  + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T
Sbjct: 5   TSKEIREKWLRYFESKGHLRVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D 
Sbjct: 65  NSQKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           ++LY+T + ED +  K W +  G+    +I  T + NFW +  +GPCGP +EIF+D+G  
Sbjct: 121 KKLYMTYFAEDLDTKKYWME-QGVEESHLIPGTRDTNFWDVG-SGPCGPDTEIFYDRGPK 178

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +RYIEIWN+VF QF    +     L + +IDTG GLER+A+++Q+
Sbjct: 179 YNKRGLELLKKDIENDRYIEIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQD 238

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIAD 288
              NYD DLF ++I+  E+   +KY+ +N             N +VI DH+R+    IAD
Sbjct: 239 APTNYDSDLFINIIKEIEKYATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIAD 298

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G   +N GRGY++RR++RR++     LG     +  L+  +   +   Y      K  + 
Sbjct: 299 GAKVSNVGRGYIIRRLIRRSIYKGMQLGVKGLFLHKLVDVVQDSLPYEY-----DKKPVV 353

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             ++ E+  F +T+++G +LL+  + +  K +I +G+ AF L +T+G P+++  +IL  +
Sbjct: 354 VAIKEEELAFHQTIEKGKLLLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKK 411

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSK 467
            +  +D+ +F +A E   + +R    G      +K+  SL    G   +FIGY  L    
Sbjct: 412 NIK-VDLKAFEEAKERHANLSR----GEKVNGMDKVINSLALIKGKIGEFIGYTDLES-- 464

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                 S +  ++   E V+      +  ++ D+TPFYA +GGQ
Sbjct: 465 ---------------------KSKILKLLNNEEEVKSLNG--EGYLILDKTPFYATSGGQ 501

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D G  +    +++I DV K   G  +H      G +  + ++   +D + R  ++  H
Sbjct: 502 NHDHGFILQGKNKIKILDVFKDKFGNHIHKI---EGKINNKDTVECYVDKEVRIGMARGH 558

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATHLL  AL  +LG H+ Q GS IT + L FD    +  T  ++K IED ++  I QN+
Sbjct: 559 SATHLLFRALVKVLGPHIDQLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNV 618

Query: 648 PVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                + N + A   GA   +   +Y D   +  V+++     +  LCGGTH+  TG + 
Sbjct: 619 EREYIVTNIKKAKEMGAIMTIDESEYMDPNNIRIVDFKG---ITKDLCGGTHLDRTGILE 675

Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLKVSQ----------- 753
              I       AG+ RI A+   +  + +L   ++ LK  L + +K +Q           
Sbjct: 676 DFKITKVEKKTAGVFRIRAVASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFT 735

Query: 754 ---------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
                     N+   ++++ E+ ++L     K K  +  +  S     +  +  ++  + 
Sbjct: 736 PNKDVEIECANIKKTIDKVHEDIKEL----IKNKSNITFDFDSVQLTKNKKYPYYLNIDF 791

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           DS ++K     L++K    II+L   S      +L+ V   +LD   A  L +  A    
Sbjct: 792 DSSQVKVAAATLREKFPEAIIVLGAKSNN---QILLCVAAKVLD---ANKLFQQIASKTN 845

Query: 865 GGGGG 869
           G GGG
Sbjct: 846 GRGGG 850


>gi|294660251|ref|NP_852904.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|83305848|sp|Q7NBY8|SYA_MYCGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|284811906|gb|AAP56472.2| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]
 gi|284930365|gb|ADC30304.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. R(high)]
          Length = 902

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 259/936 (27%), Positives = 432/936 (46%), Gaps = 98/936 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + S IR  +L+FF+   HE++ S SL+P NDP+L++ N+G+   K  F+G+E P+   + 
Sbjct: 6   SGSQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLA 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q+C+RA    ND++NVG T+RHHT FEMLGNFS G YFK+ AI+  ++LLTK + L++
Sbjct: 66  NSQRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNK 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LYIT+Y++D +AF  W    G++   IIR     NFW +  +GPCGP +EI++D+GE 
Sbjct: 122 DKLYITIYEDDNDAFNYWVG-QGINPHHIIRCDRKRNFWDLG-SGPCGPSTEIYYDRGEK 179

Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 G        E +RYIE+WN+VF QF          L + +IDTG  LER A +L
Sbjct: 180 YDPNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELLRKNIDTGASLERFACIL 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRSSSFLI 286
           Q+   NYD DL+  +I+  E+ T  KY           E + +   RVI DHL+   F I
Sbjct: 240 QDVPTNYDTDLYLPIIRTIEKHTNHKYVVDHYFSKDQSEQDVLRAFRVIADHLKCGVFAI 299

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ADG+LP  + R Y++R+++RRA  YA+ L      ++  +  +       +  LI  K +
Sbjct: 300 ADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNKEI 359

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           + + + +E   F KTLD G  + +           +  +  FKL +T+G PLD+++++  
Sbjct: 360 VIQAITNEANNFTKTLDYGFEIFNEA----KTTNNITAETIFKLVETYGFPLDLIKELSA 415

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
              +  +D+  F +  ++ +  ++A++  +G     +                       
Sbjct: 416 EAKIK-LDLDGFEELFKKHQEISKANNGEVGLKKQNENLL-------------------- 454

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAG 525
                  K           N + + V AI       V++   G     VF+ TP YA +G
Sbjct: 455 -------KFKTPSKFFYDKNNIKTKVVAIFDDKFNPVDQIEVG-SGWAVFESTPIYATSG 506

Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ  D G C     + +   +V K      +HH   ++        + L  D   R+ + 
Sbjct: 507 GQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLHH--FKKASFWLNEKVELMHDENWRKLVR 564

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NHS  H+LH  L   +   + Q+G+  +      D  +   +T  +L  IE  +  +IA
Sbjct: 565 KNHSLEHILHATLKNTISETIKQSGAFKSAAKATLDFNYPTRLTDEDLDKIETKMRQVIA 624

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +PV    ++ E +    A A    +Y     +  ++    G +S  LCGGTHV +T E
Sbjct: 625 DKIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIKI---GDYSVELCGGTHVDNTKE 681

Query: 705 IMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKS-------------LASFL- 749
           I   +I +  S+ AG  RIE ++  +   ++L+ +  ++K              L  +L 
Sbjct: 682 IEECFITNLYSLGAGRWRIEIMSSYETIYNYLVDKQNEIKQEKDHMFNELGNYDLTHYLD 741

Query: 750 ---KVSQGNVVGRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADV 794
              K+   N+   +          E+I EEY+ ++L   K+K +     +        + 
Sbjct: 742 FSKKLHSFNLPNSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIKKLALDNLEH 801

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +     + + K L      L  +    +   +  S + K + LI + ++   + NA  
Sbjct: 802 KIVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKS-DNKINYLIGI-KNATYKLNAKL 859

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGG---PNGNKADQ 887
           L       + G  GGG+ + AQ G     +  K   
Sbjct: 860 LIDKV-NAMFGAKGGGKQNFAQGGFSTDKDVGKLKA 894


>gi|193216583|ref|YP_001999825.1| alanyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193001906|gb|ACF07121.1| alanyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 885

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 264/894 (29%), Positives = 430/894 (48%), Gaps = 92/894 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  +L+FF    H ++PS SLIP NDP+L++ NSG+   K+ F+G++ P  + 
Sbjct: 1   MLSSKQIRQMWLDFFASKRHLVVPSKSLIPVNDPSLLWINSGVATLKDYFSGKKIPPAKR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI   ++ +     L
Sbjct: 61  LTNSQKSIRT----NDIENVGVTARHHTFFEMLGNFSIGDYFKKEAINFGYEFIFDVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ R+YIT + ED+E ++ W K  G+S D +I  T + NFW + + GPCGP +EIF+D+G
Sbjct: 117 EKDRIYITYFAEDKETYETWIK-CGISPDHLIAGTRDTNFWDVGQ-GPCGPDTEIFYDRG 174

Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L     E +R+IEIWN+VF Q+    +     L   +IDTG GLER+ +++
Sbjct: 175 PKYDSRGIELLKEDLENDRFIEIWNIVFSQYNNDGENNYSELISKNIDTGAGLERIVSIM 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q+   N+D DLF  +I+A E++T  KY+ NN               ++I DH+R+S   I
Sbjct: 235 QDAPTNFDTDLFLPIIKAIEKLTSYKYDINNYFTKEAKQAKINTYFKIIADHMRASVNAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE-PLMMHLLPALCTEMGSAYPELIQAKL 345
            DG+ P+N GRGY++RR++RR+      LG +    +  L+  +   +     E      
Sbjct: 295 NDGVSPSNVGRGYIIRRLIRRSYRAGISLGISASSFLYKLVKVVKDSLIYEIDE-----E 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            + + ++ E+E F KT+  G  LL+  +    K   +  ++ FK++DT+G P+++  +IL
Sbjct: 350 NVAKIIKQEEELFAKTIKEGEKLLENEI---KKHGTVTTEIVFKMFDTYGFPIELTSEIL 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLR 464
             + +A I++  F Q L+E + ++R    G       K+  SL    G  ++FIGYD L+
Sbjct: 407 KEKNIA-INLEEFKQYLKEHQEKSR----GSLESGMNKVINSLATIPGYVSEFIGYDFLK 461

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                                   +S +  ++   + +  A   +   ++ D+TPFYA +
Sbjct: 462 S-----------------------ASKILYLLDDQKAIAHANDDEISYLILDKTPFYATS 498

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D G        +++ DV K      VH     +G +     +   +D   R   +
Sbjct: 499 GGQNHDHGYLKQGNNIIEVLDVFKDKYWNHVHKV---KGSIDASQPIECYVDEPKRLNFA 555

Query: 585 INHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            NHS+THL++HAL        + Q GS I+ D   FD       T  E + IE  +   I
Sbjct: 556 RNHSSTHLMYHALRETYPNEPIEQLGSNISFDHFTFDFGLDHRPTVQECRQIEKIMRSYI 615

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           A +      I   + A   GA   +   +Y+D  +V  VE+E+    +  +CGGTHV ++
Sbjct: 616 AFSAKRNYIITTIKKAQEMGAWMTIEESEYHDANKVRVVEFEN---ITKDVCGGTHVPNS 672

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD--EKLKSLASFLKVSQGNVV--- 757
             I    IVS  S      R+  +T     +  +  +  EK K L+  +K +Q  +    
Sbjct: 673 SVIEDFKIVSVDSKGTDTYRLRVVTSSALVNEYLTDEIKEKQKLLSILIKNNQAFLPTYN 732

Query: 758 ----GRV--------------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-S 798
                ++              E I +  R+      K K Q  V D+S ++   +N + +
Sbjct: 733 IAFETKIPANSIEKEALLLAYENIEDTIRQDYKKFLKAK-QNEVVDISKYESTKINGIET 791

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE-DLLDRFN 851
           +I  E D    K     L++K    +++ +    EK    ++     D    F 
Sbjct: 792 YIFFEDDVTLTKKASVELREKYPDALVLGLSKLAEKNYFFIVASKAYDAHAIFK 845


>gi|77405530|ref|ZP_00782621.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77175837|gb|EAO78615.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 658

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 230/696 (33%), Positives = 362/696 (52%), Gaps = 50/696 (7%)

Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIV 270
            + E   LP  +IDTG GLER+A V+Q    N++ DLF  +I+  E+++G  Y+ + + +
Sbjct: 2   PRSEYKELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM 61

Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC 330
           + +VI DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG  E  +   +P + 
Sbjct: 62  SFKVIADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKXVPTVG 121

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAF 388
             M S YPE+++ +  IE+ ++ E+E F +T+D G   LD +L+ L     + L G   F
Sbjct: 122 QIMESYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDIF 181

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           KLYDT+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS   +      
Sbjct: 182 KLYDTYGFPVELTEELAEDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQN----- 235

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
                                +    ++ +       + + S +  I+   E  E    G
Sbjct: 236 ---------------------ETLAGIVEESRFDYGADSLESNLSVIIADNERTEAVSEG 274

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILR 566
           Q   +VF QTPFYAE GGQ+ D G    D      ++ DVQK   G  +H   V    L 
Sbjct: 275 Q-ALLVFAQTPFYAEMGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-ASLS 332

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              +  L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH + 
Sbjct: 333 VGTNYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEA 392

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +++ EL+ IE  VN+ I  +L + T   + E A   GA AL G KY   VRVV +     
Sbjct: 393 VSNEELRHIEQEVNEQIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI----- 447

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G +S  LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK +A
Sbjct: 448 GNYSVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIA 507

Query: 747 SFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHI 800
           + +K  Q  +   +V+ + +  R LQ  + + K +              +   V F++  
Sbjct: 508 ATVKAPQLKDAAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQ 567

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +   D+  L++  D  ++K  S +++LV    EK   ++   T+D     +A ++ +  A
Sbjct: 568 VDVADAGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKD----VHAGNMIKGLA 623

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            ++  G GGG+P MA +GG + +K  + +A VA  L
Sbjct: 624 PIVA-GRGGGKPDMAMAGGSDASKIAELLAAVAENL 658


>gi|68074667|ref|XP_679250.1| alanine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56499954|emb|CAH95111.1| alanine--tRNA ligase, putative [Plasmodium berghei]
          Length = 1076

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 267/1040 (25%), Positives = 463/1040 (44%), Gaps = 156/1040 (15%)

Query: 2    SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
                 +R  F+ +F+   H ++ S+S+IP ND TL+FTN+GM  FK IF G         
Sbjct: 48   MTSEQVRNNFINYFKNKDHTIVDSASVIPYNDNTLLFTNAGMNQFKKIFLGNVDKNSDLG 107

Query: 59   --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE +I+ AWDLLT 
Sbjct: 108  KLKRCVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIEYAWDLLTN 167

Query: 117  EFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
             + ++  RLY+T +  D+         EA K+W K   L   +I+     DNFW MAETG
Sbjct: 168  VYKINPNRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDEKRILPFGMKDNFWEMAETG 225

Query: 168  PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
            PCGPCSEI +D+           +++    +EIWN+VFMQ+ +   +    LP   IDTG
Sbjct: 226  PCGPCSEIHYDRI-GNRDASDLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPSPCIDTG 284

Query: 228  MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-----------TGMKYEGNNIVNHRVIV 276
            MGLER+ ++LQ   +NYD DLF  + +  +++              +        +RVI 
Sbjct: 285  MGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDNIPSYQGKINEQDPDKIDYAYRVIS 344

Query: 277  DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEM 333
            DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   +        L+ ++C  +
Sbjct: 345  DHIRCATIAISDGCIPSNEGRNYVIRRIIRRAIRVGKQVFNIKSNVLWFYKLVDSVCKIL 404

Query: 334  GSAYPEL--IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDV 386
            G+ + +L   +    I+  +  E+  F KTL++G+   + ++          + + +G  
Sbjct: 405  GNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKIIKRCHQNPSNNNNLFSGKD 464

Query: 387  AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
            AF LY ++G P+D+++ +   + +  +++  FN   ++ +  +  ++  +          
Sbjct: 465  AFDLYTSYGFPIDLIEIMCEEKSVK-LNMEEFNTLFKKHQLVSDTNNFKINK------VI 517

Query: 447  SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA---IVQQGEIVE 503
             L  +        Y++L    + K +     + P     N  +  +K+   I+  G  ++
Sbjct: 518  DLPVEKAHDIKCKYNVLPTIDYHKYNWNNTFEVPKSKEENKNNLRLKSSVQIIYDGNFLD 577

Query: 504  EAVSGQ-----------------KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            E +                    K  ++  +T FY E GGQ+ DTG    + ++ Q+ +V
Sbjct: 578  EIMHTDDEAKEPLSCVKVENKQKKYALILKETNFYYENGGQIYDTGFIQNESMKFQVLNV 637

Query: 547  QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            QK ++   +H  ++  G ++    +   +D++ R+ ++ NH+ATHLL+ +L  +L   ++
Sbjct: 638  QKMSD-YILHIGVLLSGCIKKNDIIEAVVDFERRKLIACNHTATHLLNFSLRKVLADQMN 696

Query: 607  ----------------------------------------------QNGSCITPDGLRFD 620
                                                          Q GS +  + LRFD
Sbjct: 697  QKKNKCDNKDENKKVSLEDSNTIKNKLEENSSCNNNSNGSSIFNCEQKGSLVDDEKLRFD 756

Query: 621  VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679
             +  + I +  L  IE  +N+I+ + L V  + M+  ++    G  A+    Y+D+V VV
Sbjct: 757  FSFIQNINTDVLNKIETEINNIVKEELDVSVKTMDLTESKKIKGIRAIFEEDYSDKVNVV 816

Query: 680  SVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +      V            S  LCGGTH+ +T  I    I SE SI  GI RI A+T 
Sbjct: 817  FISKNADNVLNNLDVNYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGIHRINAVTN 876

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE------------IWEEYRKLQ----- 771
            ++A       D+ +            N +  V+             + ++ + L+     
Sbjct: 877  KKAEEINKKFDDLVSKYKHVFDDPNENKLTDVQNYKRILKEDKFLPLIKKNKILEDLEII 936

Query: 772  -------LIHAKRKL---QLNVEDLSCHKIAD-VNFMSHIISEVDSKE-LKSVMDALQKK 819
                     +A+++L    + +  L   +  D V     + +E++  + +   +     K
Sbjct: 937  EKDIVEKKKNAQKELFNKAMRMGKLYATENKDNVLLDIKLFTEINGNQKVLEKVGQAYNK 996

Query: 820  IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                +     I  E     ++ + + L      A    +     + G  GGG+ + A   
Sbjct: 997  ANKNLSYFFIIHDENNTYCVLEIRDSLKCKEIQAETFMKQVMGSVEGHSGGGK-NKAFGS 1055

Query: 879  GPNGNKADQAIAGVASFLKK 898
                +K           +KK
Sbjct: 1056 A-EKDKGTAIKQAAEEVIKK 1074


>gi|46203377|ref|ZP_00051608.2| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 473

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 277/463 (59%), Positives = 341/463 (73%), Gaps = 2/463 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+  GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK  AI+LAW L+TKEF L
Sbjct: 61  ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWRLITKEFGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL +TVY +D+EA  LWKKI+G   DKIIRI T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PGS  E+G+R++E WNLVFMQ+EQ     R  LP+ SIDTGMGLERMA +LQ 
Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NYD DLF+ LI A               ++RVI DHLRS+SFLIADG+LP+NEGRGY
Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPTLETRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRRIMRRAM +  LLG  +P+M  L+PAL  EMG A+PEL++++ LI ETLR E+ RF 
Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPALVREMGQAFPELVRSEALISETLRLEEGRFR 360

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           KTL+RGL +LD     L   + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D  +F+
Sbjct: 361 KTLERGLAILDTESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTAAFD 419

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
            A++ Q+  ARA   G G   TE +WF +KE+ GAT+F+GY+ 
Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYET 462


>gi|147677395|ref|YP_001211610.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146273492|dbj|BAF59241.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 537

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 229/557 (41%), Positives = 347/557 (62%), Gaps = 36/557 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK  FTG  KP Y  V
Sbjct: 1   MTGNEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRV 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R      D+++VG+T RHHTFFEMLGNFSFG YFKE AI  AW+ +T+   L 
Sbjct: 61  TTCQKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLP 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             +L+I+++ +D+EAF++W K  G+ A +I+R+  + NFW +   GPCGPCSEI+ D G 
Sbjct: 117 ADKLWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIGV-GPCGPCSEIYVDLGA 175

Query: 182 CIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
               G P      + +R++EIWNLVF+QF +  +     L    IDTG GLER+A+V+Q 
Sbjct: 176 ERGCGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQG 235

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297
              N+D DLF+ ++  +  + G+KY  +G   V  +VI DH R+ +F +ADG LP+NEGR
Sbjct: 236 VPTNFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGR 295

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GYV+RR++RRA+ + RLLG  +P +  +  A+  +MG  YPEL+  +  +   +R E+ER
Sbjct: 296 GYVIRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEER 355

Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           FG+TL +G  +L+ +++   +    +++G+ AF+LYDT+G PL++ Q++   +GL  +D 
Sbjct: 356 FGETLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDT 414

Query: 416 ISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
             F +A+EEQR RAR+           + ++  ++E+ G T F+GYD L           
Sbjct: 415 DGFGRAMEEQRQRARSARQETDYISGRDAMFKKMREEVGETVFVGYDALE---------- 464

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                         +  V  IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G  
Sbjct: 465 -------------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKV 511

Query: 535 IGDGIRLQITDVQKKAE 551
               + ++I +V K  E
Sbjct: 512 TAADLEVEIHEVTKPVE 528


>gi|194246643|ref|YP_002004282.1| alanyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|193807000|emb|CAP18435.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 861

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 272/929 (29%), Positives = 462/929 (49%), Gaps = 114/929 (12%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+++  I+  +L FF   GH    S SLIP NDPTL++ N+G+ P K  F G    V   
Sbjct: 1   MTSL-EIKNMWLNFFINKGHYQENSFSLIPENDPTLLWVNAGITPLKKYFNGSLPVVNSR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           +  +QKC+R     ND++NVG+T+ HHTFFEMLGNFS G YFK+ AI  A++LL   + F
Sbjct: 60  IVNIQKCLRT----NDIENVGKTSTHHTFFEMLGNFSIGNYFKKEAIDFAYELLMSKQWF 115

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
             D  ++YIT Y +D E   LW K   +  + +I  +   NFW++ + GPCGPC+EIFFD
Sbjct: 116 GFDSNKIYITYYYKDIETLNLWLKKD-IHPEHLI--SLESNFWNIGQ-GPCGPCTEIFFD 171

Query: 179 QGECI-PGGLPGSSEEGER--YIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLER 232
           +G    P G     ++     ++EIWN+VF Q+    +  K     LP  +IDTG GLER
Sbjct: 172 RGSKYHPKGKELIKKDIPNNRFVEIWNIVFSQYNFNPENKKNIYQELPSKNIDTGAGLER 231

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A +LQ+  NN++ D+F  +IQ    ++ +KY+  N    +VI DH+R+  F I DG++ 
Sbjct: 232 LACILQDVENNFETDIFFPIIQKISYLSSIKYQ--NQEAFKVISDHIRTLVFAIGDGVIF 289

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           AN+GRGYVL++I+RRA+   ++L + +P +  L+P +  +    YP+L + + ++E+ + 
Sbjct: 290 ANDGRGYVLKKILRRAIQKGKILNFKKPFLYKLIPIVVKQNQFFYPKLKEYQSILEKIIY 349

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E+++F   L+      +  + +L K+  L+G+  FKLYDT+G+P +I+ +    +G   
Sbjct: 350 KEEKKFFDMLEN----CEEKILNLIKNNFLSGEQYFKLYDTYGIPKEIILNYCEQKGFI- 404

Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           ID   F + LE  ++ ++      L        + + K+K   + FIGY++L        
Sbjct: 405 IDNDGFIKKLESHKNLSKLNQHFKLSIQKKNDKFLNFKDK---SNFIGYNILET------ 455

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V  I ++G             ++ ++TPFY   GGQ+ D 
Sbjct: 456 -----------------KTKVIKIFEEG-------------IILEKTPFYPNMGGQINDK 485

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G        + +  + +   G  +H   V+  +   +  ++  ID+  R+Q+S++H+ATH
Sbjct: 486 GFINN----IPVKKIIRLHHGQLLHQ--VQSDLFYEDQEVIAKIDFNARKQISLHHTATH 539

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  A+  ILG H+ Q GS I  + LR+D  H + I   ++   E  VN  I +   V+ 
Sbjct: 540 LLQDAIILILGKHIEQKGSFIGDNLLRWDFNHYEKIKPQDILKFEIQVNKWIQKKTNVII 599

Query: 652 RIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           + +   DA            KY + VR+V +       +S  LC GTH  +T ++  + I
Sbjct: 600 KEILFSDAKKIPNIKYFKDKKYPEIVRIVQM-----DDYSITLCAGTHAKNTKDLKKIII 654

Query: 711 VSESSIRAGIRRIEAITGQRARS--------HLMGQDEKLKSLASFLKVS------QGNV 756
           +S + I +GI RIEA  G  A +        +L  +   +K  A  + +S        N+
Sbjct: 655 LSCNLISSGIYRIEASVGLNAINILNQKINFYLDEKKNIIKK-AQRMSISNFKLLLPENI 713

Query: 757 VGR------------VEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           +              ++ +      ++K  L + K+ +  N++     KI    F+  I 
Sbjct: 714 IITESFQDILNYKLYIQNLQRNFNFFKKELLENQKKYVLSNIKKFIPSKITTKMFLK-IN 772

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            +++ + LK +++ L  K +  I+++  +  +K   +    T       +A  + +  ++
Sbjct: 773 DKMEMEVLKYLLEYLFVKFKMEILLICYLQDDKMFFLCKSAT------LHAGQIIKTISQ 826

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            +  G GGG    AQ    + NK    + 
Sbjct: 827 -IAEGFGGGNNKFAQGSTKHPNKLKSVLK 854


>gi|19074068|ref|NP_584674.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1]
 gi|19068710|emb|CAD25178.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1]
          Length = 864

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/804 (32%), Positives = 412/804 (51%), Gaps = 70/804 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R +FL +F    H+++ SSS++P  D TL+FTNSGMV FK    G++K   + 
Sbjct: 2   MWTTEKLRQSFLNYFASKSHKIVNSSSVVPYEDDTLLFTNSGMVQFKKNLLGEKK-DLRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             +VQ+C+RAGGKHNDLD+VG+   HHT+FEM+GN+SFG YFKE  I  AW+ L +   L
Sbjct: 61  ACSVQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEGIGFAWEFLVEVLKL 120

Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           D  RLY+T YDE D+E+ ++W+K   L   +II  +  DNFW M +TGPCGPC+EI +D+
Sbjct: 121 DTDRLYVTYYDELDKESGRIWRKY--LPPSRIIAASYKDNFWEMGDTGPCGPCTEIHYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      +++    IEIWN+VF+++ +        L +  IDTG+GLER+ ++L +
Sbjct: 179 IGSRDASR-LVNKDDPNVIEIWNIVFIEYNRTTSG-LAPLERKCIDTGIGLERLLSILMD 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEG 296
             +NY ID F  +I+A E     KY        V  RV+ DH R+ +  + D +  +N+G
Sbjct: 237 VKSNYLIDSFSTIIKAMESHCSFKYNDKAESTDVAFRVVADHCRTIAVCVYDKVDFSNDG 296

Query: 297 RGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            GYVLRRI+RRA+ YA  +LG  E ++  L+      +G    EL        E +  E+
Sbjct: 297 VGYVLRRILRRAVRYAHEVLGLKEGVLGELVVVAAHAIGI---ELES-----VECVNKEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
             F +TL +G+   + +     K   ++G+  F LYDT+G P+D+ + +   R +  ID 
Sbjct: 349 LLFMRTLKKGIERFNRLAESSNK---ISGEDLFLLYDTYGFPVDLTELMAVERNIE-IDY 404

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F       R RA   S                        +  D+   SKF   D   
Sbjct: 405 TNFESC----RQRAIEASKKSKGTK-----------------LNIDIGMCSKFPPTDDSF 443

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVE--EAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
             ++  +         + A+  +  I E  +   G ++ +VFD+T FYAE GGQ+GDTG 
Sbjct: 444 KYERNGVSAMF-----LFAVAGEDVITEPCKIPKGIELGIVFDKTCFYAECGGQVGDTGK 498

Query: 534 AI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            I     GD     +TD Q    G  VH   ++          +   DY+ RR++  NH+
Sbjct: 499 IIFRDDSGDTGVFNVTDTQ-AILGFVVHKGALDGSASH---QALQMYDYELRRRIMRNHT 554

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
            THLL+  L T++     Q GS + PD LRFD    + +T+ EL+ +E  +ND I +   
Sbjct: 555 GTHLLNFFLRTVI--KTQQRGSLVDPDKLRFDFEG-RKLTNEELEDVERKINDFIKKGAE 611

Query: 649 VVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V   I++R  A+ +     +   +Y + VR++++  +  G+    +CGGTHV++  +I  
Sbjct: 612 VKAVILDRRQAMDNPNIVRMQNEEYPENVRIITM--QSDGLIIQEMCGGTHVTNVSDIGK 669

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----GRVEE 762
             IVSE+ + A  RRI  +TG++A       +  L  L+    V+    +      ++E 
Sbjct: 670 FRIVSETGVSANTRRIVGVTGKKAHELDAEAELCLSKLSMGNVVNVDKAIPLFYRQKIEV 729

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL 786
           + +  RK     +K +   N ++ 
Sbjct: 730 LNQRNRKKDEELSKAQYFKNKKEF 753


>gi|15829028|ref|NP_326388.1| alanyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|81620588|sp|Q98Q12|SYA_MYCPU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|14089972|emb|CAC13730.1| ALANYL-TRNA SYNTHETASE (ALANINE--TRNA LIGASE) (ALARS) [Mycoplasma
           pulmonis]
          Length = 873

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 260/916 (28%), Positives = 416/916 (45%), Gaps = 99/916 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  ++ FF+   H  L S SLIP +DP+L++ NSG+   K+ F+G++ P    
Sbjct: 1   MLSSKEIRQKWITFFESKNHLKLESKSLIPVDDPSLLWINSGVATLKDYFSGKKTPPSPR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ A+  A + +     L
Sbjct: 61  IVNSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEALAFAKEFVLDVLKL 116

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           ++ +LY T Y ED E  ++W  + G     +I  +   NFW +   GPCGP +EIF+D+G
Sbjct: 117 EKEKLYFTYYHEDLETKQIWLDL-GFDPSHLIAGSRKTNFWDVG-MGPCGPNTEIFYDRG 174

Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L     E +RYIEIWN+VF  F    K     L   +IDTG G ER+ ++L
Sbjct: 175 PKYDPRGVELLKEDIENDRYIEIWNIVFSTFNNDGKNNYSELKLKNIDTGAGFERIVSIL 234

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q    NYD DLF  +I+A E++T  KY   N               ++I DH+RS +  I
Sbjct: 235 QNAPTNYDTDLFLPIIRAIEKLTNKKYVVENYFQNEPVQREINTYFKIIADHMRSVANAI 294

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-EPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG   +N GR Y++RR++RRA      LG   E  +  L+P +   +   Y        
Sbjct: 295 GDGAGVSNVGRDYIIRRLIRRAYRTGIQLGIKDEAFLYKLVPVIKDSLIFDY-----DTK 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            + + ++ E+  F KT+D+G  +L+       K   ++  + FK++DT+G P+++ +++ 
Sbjct: 350 HVAKVIKDEELLFSKTIDQGKKILEKEFEKSKK---IDASIVFKMFDTYGYPVELTKEMA 406

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             +G+  I +  F +  +E   +++    G G         ++ +K    +F+GYD L  
Sbjct: 407 KEKGVE-ISLEEFEKYRQEHELKSK-SKKGDGMKKVINFLANIDKKVD--EFVGYDTLET 462

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                  +S +  +      + +     +   + D+TPFYA +G
Sbjct: 463 -----------------------TSKILYLFNSESKLNKLEG--QGYFILDKTPFYATSG 497

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G    DG + +I +V K      VH     +G + +   L   +D +NR+ L  
Sbjct: 498 GQKHDQGYVEQDGKKFKILEVFKDKNWNHVHLV---KGEIDSSKELKCVVDAKNRKNLER 554

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLL   L   +G  V Q GS      L FD       +  ++K IE  V  II  
Sbjct: 555 NHSATHLLFKVLRDQIGPFVVQLGSNNNEKRLTFDFPSQNKPSKEKIKEIEKQVRKIIEL 614

Query: 646 NLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++         + A   GA   +   +Y D   V  V +++    +S LCGGTH+ +T  
Sbjct: 615 SIDRQYSNETIDKAKEMGAIITIEETEYMDPTNVRIVTFKN---ITSDLCGGTHIPNTKL 671

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLM---------GQDEKLKSLASF------- 748
           I    I+S  +   GI RI AIT ++                Q   +K +          
Sbjct: 672 IENFKIISVENKGTGIFRISAITTEKLVRAFNQEHFDNLIEQQQNIIKKIQKINPSFKYK 731

Query: 749 -------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
                  L+  Q  V   +  + +E++K   + ++  +++N E+L    IA+     ++ 
Sbjct: 732 NQFKSDDLEQRQVEVEESILALQQEFKK--ALKSQENVEINFENLEFENIANYKVYINL- 788

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
            E D   +K+    L++K    +I+L  + K      +     D    FN   L +    
Sbjct: 789 -EADKNTIKAQGAQLREKFDDLLIILASVEKNSTILTIASKKYDSNKIFN---LLKSEYS 844

Query: 862 VLGGGGGGGRPHMAQS 877
           +     GGG   + Q 
Sbjct: 845 L----KGGGNAILVQG 856


>gi|170594914|ref|XP_001902174.1| alanyl-tRNA synthetase family protein [Brugia malayi]
 gi|158590293|gb|EDP28977.1| alanyl-tRNA synthetase family protein [Brugia malayi]
          Length = 863

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/798 (31%), Positives = 399/798 (50%), Gaps = 52/798 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-----PV 57
           +   IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  FK +F G +        
Sbjct: 56  SAQQIRLSFLEYFKEHNHTYVPSSSVIPEDDSSVTFVNAGMNQFKPLFLGAKYTEGKLAA 115

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + V   QKC+R GGKHND D+VGR   HHTFFEMLGN+SFGGY K  A   AW+ LT  
Sbjct: 116 LRNVVNWQKCIRIGGKHNDFDDVGRDLTHHTFFEMLGNYSFGGYSKMEACLYAWNFLTDV 175

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   RLYIT +  DE        E   +W K+ G+  D+++   +N NFW MA+TGPC
Sbjct: 176 LKIPADRLYITYFGGDESMKLKEDRECRDIWIKL-GVPEDRVLGFCSNHNFWEMAQTGPC 234

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D            +      +EIWNLVFMQF +    +   LP + ID GMG
Sbjct: 235 GPCSEIHYDLIGNRKAQK-LVNSSNPTVVEIWNLVFMQFSRDISGKISSLPTLYIDCGMG 293

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFL 285
            ER+ +++Q   + YD DLF  L++   + + ++  G         +R++ DHLR++  +
Sbjct: 294 FERLVSIVQGLHSAYDTDLFLPLMRIIHEYSKVRGYGGQLGDIDTAYRIVADHLRAACIM 353

Query: 286 IADGILPANEGRGYVLRRIMRR-AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I+DG+ P++  RGY LRR++RR A+ +   LG    ++  L+P     +   Y  +   +
Sbjct: 354 ISDGVEPSSRNRGYHLRRVLRRAALNFTLTLGAERGMLASLVPDFVNHITLLYNNVAACE 413

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            +I +T+ SE++ F ++ D+G  LL+  ++   +  +L+G++A+ L  T+GLPL I Q I
Sbjct: 414 TVIAKTVMSEEQLFWRSYDKGCKLLEHNIA--SQQHVLSGEIAWMLSGTYGLPLSITQKI 471

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +GL  +D+  F Q L   +   +A          E++W  +  +          +L 
Sbjct: 472 CREKGLK-VDVDGFQQCLANFQKAQKA---------EEELWQKIDLEE--------MILN 513

Query: 465 GSKFMKEDRKVLCQKP---PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
           G +   +  K  C++      +  +   ++V      G+ V     G+   VV D T F+
Sbjct: 514 GVEPTNDSEKYCCERIELGKYEFPSRTGTVVAIFDVNGKNVMSLNPGELGSVVMDSTIFF 573

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQN 579
           AE GGQL D G    +    + I +  K+  G  +H   V + GIL   ++L   ID + 
Sbjct: 574 AEQGGQLYDRGILQDNLNNTIFIVNSVKRRNGYIIHTGKVADNGILEKGVNLTQIIDPKQ 633

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDN 638
           R  L   H+ATH+LH AL  + G  V Q GS I PD L FD     + I   +++ +   
Sbjct: 634 RFFLMCGHTATHILHFALEKVFGVSVRQMGSFIGPDKLHFDFFIPDQKIALEKIEKVMAM 693

Query: 639 VNDIIAQNLPVVTRIMNRED----AIASGAAALLGT-KYNDRVRVVSVEYED-GGVHSSA 692
           VN+II  N+ V  + + +E+         A  +      N   R+++VE     G     
Sbjct: 694 VNNIIESNINVTVKYILQEELGSLHKDFSAFDISQEASSNGSYRIITVESSALLGQDIIE 753

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            C GTHV +T +I    I+ + S  A +RRI A+T   A   +    +    L+  L   
Sbjct: 754 PCCGTHVLNTSDIGRFVIIGQKSRGANVRRIYAVTNSAALESIHNATKLKDELSDALSNV 813

Query: 753 QGNVVGRVEEIWEEYRKL 770
            G  +     + +  + L
Sbjct: 814 SGTFIDTQRLLKDFQKNL 831


>gi|320169841|gb|EFW46740.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 992

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 301/905 (33%), Positives = 442/905 (48%), Gaps = 99/905 (10%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV-- 64
           IR  F+++F   GHE + SSSL+P NDPTL+F N+GMV FK+ F          +T+   
Sbjct: 88  IRRDFVQYFVDRGHEHVKSSSLVPQNDPTLLFVNAGMVQFKDRFLHPRASSSGRLTSAVS 147

Query: 65  -QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+RAGGKHNDL NVG T RHHTFFEMLGNFSFGGYFKE AI LAWD LT    L + 
Sbjct: 148 VQKCMRAGGKHNDLTNVGYTPRHHTFFEMLGNFSFGGYFKETAIPLAWDYLTAHLQLPKD 207

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGEC 182
           RL ITVY+ D+E++ +W+   G+   +I R+   DN+WSM +  GPCGPC+EI FD    
Sbjct: 208 RLMITVYETDDESYAIWRDKIGVPESRIWRLGAADNYWSMGDGPGPCGPCTEIHFDLQN- 266

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ----ERFILPKMSIDTGMGLERMATVLQ 238
                   + + ERY+EIWN+VFMQ ++            L    IDTGMGLER+A VLQ
Sbjct: 267 -----GLDARDPERYMEIWNVVFMQEQKVASSSGQLSLAPLETKCIDTGMGLERLARVLQ 321

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------HRVIVDHLRSSSFLIADGILP 292
            K +N++ID    L  A+        + +  +         ++ DH+R++SFLIADG++P
Sbjct: 322 GKASNFEIDSLASLTAATAAAASAASQASGQLATPPTAFLNIVADHVRAASFLIADGVIP 381

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETL 351
           +N GRGYVLRR++RRA      +G  +P +  L+P L        YPE+   +  I   L
Sbjct: 382 SNLGRGYVLRRVIRRAAGVGLQMGLKKPFLADLVPVLLASTDPTFYPEIFARQTEICAIL 441

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           + E+E F   L  G+ +L+  +      K  +L     F+L+++HG P+D+ + I   RG
Sbjct: 442 KQEEEVFSSALHSGVSMLNSEIDAAVQRKQAVLAPATVFRLHESHGFPIDLARIISTQRG 501

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469
           ++  D  +  Q + + R   R  S   GS  +                     L  +   
Sbjct: 502 VS-FDEQAIEQMVVDNREMTRQRSRATGSAAS---------------------LLTNANS 539

Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529
           K++   L +     ++    S VK  V                    Q+P Y E GGQ+G
Sbjct: 540 KQETTQLKEAIVSSMSESRDSKVKLAVVD------------------QSPLYPEGGGQVG 581

Query: 530 DTGC-AIGDGIRLQ-ITDVQKKAEGIFVHHAI---------VERGILRTEMSLVLTIDYQ 578
           +TG     DG  L  + +   K  G F+   I              +     + L     
Sbjct: 582 ETGDVLSSDGSTLLGVVETTSKPAGDFITIRIRPADSDVDGTAFDSIAAGGKIQLRSHAS 641

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R  +S +H+A H+L+ AL  + G+ V Q GS +T   LRFD TH   ++ A+++ +E  
Sbjct: 642 LRHVISAHHTAVHMLNAALRKMFGTTVVQAGSLVTSQRLRFDFTHKAALSDAQVEQLEAA 701

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN I    LPV T ++   +A   GA ++L   Y++ VRVV +     G  S  LCGGTH
Sbjct: 702 VNGIAQSRLPVQTEVLPLAEAQRRGAISMLNETYSENVRVVKI-----GDVSMELCGGTH 756

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ----- 753
            S++  +    IV++SS+ AG RRIEA+ G+ A + L GQ + L  +A  LKV       
Sbjct: 757 ASNSHSVFPFKIVAQSSVAAGTRRIEAVAGETAITWLAGQQQVLGRIARTLKVEPGPGVE 816

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLSCHKIADVNFMSHIISEVDSKELK 810
             +   V+ + ++ + +     KR         E      +AD   +S     VDS E  
Sbjct: 817 DALNALVQRLKDQTKAIDAAMVKRASSPWNEAQELSGLLAVADTTAVSVSFRMVDSSEPS 876

Query: 811 SVMDALQKKIQSGI---IMLVGISKEKKASVLIVVTEDL---------LDRFNAVDLARL 858
           S  +   +++ + +   ++ V I  +   +V I     L              A  L + 
Sbjct: 877 SFANVRAERLANALQPTVVHVVIGSDNSMAVAIPAAPQLQSSTPSAPSTTPLRASALWKS 936

Query: 859 SAKVL 863
            A VL
Sbjct: 937 LASVL 941


>gi|194223559|ref|XP_001497842.2| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial (putative)
           [Equus caballus]
          Length = 962

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 256/945 (27%), Positives = 424/945 (44%), Gaps = 89/945 (9%)

Query: 11  FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64
           FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      ++ V   
Sbjct: 42  FLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 101

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123
           QKCVRAGG+H+DL++VGR   HHTFFEMLGN++FGG YFKE A  +AW+LLT+ + + + 
Sbjct: 102 QKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPEE 161

Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RL+++ +        D D E+  +W ++ G+ A +++     +NFW M +TGPCGPC+EI
Sbjct: 162 RLWVSYFSGDPKVGLDPDLESRDIWLRL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 220

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
            +D                   +E+WNLVFMQ  ++       LP+  +DTGMGLER+  
Sbjct: 221 HYD---------LAGGVGTPELVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 271

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VLQ + + YD DLF  L+ A  QV+ +       ++ RV       +  +    + P+  
Sbjct: 272 VLQGRRSTYDTDLFSPLLSAIHQVS-LPIRFQKPLDLRVT-----GAPGVCIWALSPSRL 325

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
               +LRR +R +   + +L      +  L+P +   +G AYPEL +    I   +  ++
Sbjct: 326 VLRRILRRAVRFS---SEVLRAPPGFLGSLVPVVVETLGDAYPELQKNSAQIASLVSEDE 382

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQDILCARGLAGI 413
             F  +L RG  ++D  +  LG   +   +VA+ L      GLPLD+++ +L  +G+  +
Sbjct: 383 AAFLASLQRGRRIIDRTVRRLGPSHVFPAEVAWSLSLSGNLGLPLDLVELMLEEKGV-QL 441

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D     Q  +E+  R    +  +     +    +L E       +    +  +    +  
Sbjct: 442 DSAGLAQLAQEEAQRRAQQAEPIQEQGLQLDVHALGE-------LQRRGVPPTDDSPKYS 494

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
             L      +     + +++   + G  V     GQ+  ++ D+T FYAE GGQ  D G 
Sbjct: 495 YSLQPGGGYEFGTCEAQVLQLYTEDGRAVASVGEGQRCGLLLDRTNFYAEQGGQASDRGY 554

Query: 534 AIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
            +    +  +  V + +  G F+ H  V    L+    + L +D   R      H+A HL
Sbjct: 555 LVRVEQQDVLFPVARAQVCGGFILHEAVAPECLKVGDQVQLHVDKAWRLGCMEKHTAIHL 614

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL   LG    Q GS + P+ LR DV    P+T  +L+++E  V + + Q+  V   
Sbjct: 615 LNWALRQALGPGTEQRGSHLNPEHLRLDVATQAPLTPEQLQAVEGIVQEAVGQDEAVYME 674

Query: 653 IMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDGGVHSSALCGGTHVSST 702
            +             L   Y D V            +    +     S  LC GTH+  T
Sbjct: 675 EVALACTAHVPGLRSLDEIYPDPVRVVSVGVPVAHALDPASQAALQTSVELCCGTHLLRT 734

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           G +  L IV E  +  G  R+ AITG   Q+AR       +++++ A  L     +VV  
Sbjct: 735 GAVGDLVIVGERQLTKGTTRLLAITGEQAQQAREVGQSLAQEVEAAAERLSRGSRDVVEA 794

Query: 760 V-----------------------EEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKI--- 791
                                    ++    + LQ     A RKL++        ++   
Sbjct: 795 QRLSKDMGRLTDAVDTAMMPQWQRRQLQATLKVLQRRANTAIRKLEVGQAAQKTQELLRR 854

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            ++   +   +S      L  V+  L +++ S  ++L+    +        V + +   F
Sbjct: 855 HSEGPLIVDTVSTESLSVLVKVVRQLCEQVPSTSVLLLSPQPQGHVLCACQVAQSVSPAF 914

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            A   A      +GG   G R  +AQ  G   +  + A++   ++
Sbjct: 915 TAEAWALAVCSHMGGKAWGSR-VVAQGTGSTAD-LEAALSTARAY 957


>gi|304373323|ref|YP_003856532.1| alanyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309514|gb|ADM21994.1| alanyl tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 887

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 268/935 (28%), Positives = 443/935 (47%), Gaps = 96/935 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L+FF+   H  + S SL+P NDP+L++ NSG+   K+ F+G++ P  + +T
Sbjct: 6   TSKQIRQLWLDFFKSKNHLEVESKSLVPENDPSLLWINSGVATLKDYFSGKKVPPSKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ LTK    D 
Sbjct: 66  NSQKSLRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEYAFEFLTKVLKFDV 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T + ED +    W K+ G+  + +I      NFW M   GPCGPC+EIF+D+G  
Sbjct: 122 NKLYFTYFLEDLDTKDYWLKL-GIKEEHLIAGNRKTNFWDMGI-GPCGPCTEIFYDRGSK 179

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +R+IEIWN+VF QF    +     L   +IDTG GLER+ ++LQ+
Sbjct: 180 YDSRGIELLKEDIENDRFIEIWNIVFSQFNNDGENNYTPLISKNIDTGAGLERIVSILQD 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIAD 288
              N+D DLF  +I   E++T  +Y+  N               ++I DH+R+    I D
Sbjct: 240 GPTNFDTDLFLPIIHQIEKMTSFRYDIENYFKKEEKQSKINSYFKIIADHIRAVVNAIND 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG  E  +  L+  +   +             + 
Sbjct: 300 GVEPSNTFRGYIIRRLIRRAYRTGKKLGIKEAFLYKLVNVVKNTLIYDI-----DVDRVS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E ++ E+  F KT++ G +LL   +     ++  +  VAFKL++T G P+++ Q+IL  +
Sbjct: 355 EVIKKEELLFEKTIENGEILLQKEIE--KNNKQFDFAVAFKLFETFGFPIELTQEILAEK 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D+  F +  +E+ ++       LG   T      +K++   +QFIGY  L+    
Sbjct: 413 NIE-LDMDQF-KIYQERHAQLSMGEKKLGMKKTVNSLALVKDQI--SQFIGYSHLK---- 464

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  +  + + +E++   Q+  V+FDQTPFYA AGGQ 
Sbjct: 465 -------------------AKAKIVFLADEEQEIEQSSEHQESYVIFDQTPFYATAGGQK 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  + +  +++I  V K     F++H  V  G+L     + L +D  NRR L  NHS
Sbjct: 506 HDQGWIVQNNNKIKIKQVFKDK---FLNHVHVLEGVLDKNQEVFLEVDEVNRRNLERNHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           +THLL  +L    G+ + Q GS    + L FD    K  T  EL  I++ VN  I +++ 
Sbjct: 563 STHLLFKSLREQYGAQIKQLGSDNNEERLTFDFPLDKKPTQKELNQIQNRVNSYIKEDVE 622

Query: 649 VVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                 + ++A    A   L   +Y D   V  V+++     ++ LCGGTH++ T  I  
Sbjct: 623 RHYLETSIKEAEKLNAVMTLEEAEYMDPKNVRLVQFKG---ITTDLCGGTHIAKTSLIER 679

Query: 708 LYIVSESSIRAGIRRIEAITGQR-----ARSHLMGQDEKLKSL----------------- 745
             IVS  +  +G+ RI AIT                 + L  L                 
Sbjct: 680 FKIVSCQNKGSGVFRIRAITTNEKISSYCFEAFKEHWDTLMKLWDKNHQLDSTYRGVSSL 739

Query: 746 --ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             +   ++    +   +E+   + + LQ   +  K  +  +  S + +   N   ++   
Sbjct: 740 NFSDDWELRLNEIEQYLEKAKADNKILQKKASLAKENVEFKLDSVNILELENRQIYLDLN 799

Query: 804 VDSKE-LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           VDS   LK +   L++K  +  I  V    +    ++ + +++   R    +L  L++  
Sbjct: 800 VDSVHNLKLLAVNLREKYTN--IDFVLGQHQDMRLLITIASKNKQSRNIFEELNSLNSI- 856

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                GGG   + Q+   N     + ++ +   L+
Sbjct: 857 ----KGGGSDILVQA---NMVWEPEVVSKIKQILQ 884


>gi|330723800|gb|AEC46170.1| alanyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 887

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 267/935 (28%), Positives = 443/935 (47%), Gaps = 96/935 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               IR  +L+FF+   H  + S SL+P NDP+L++ NSG+   K+ F+G++ P  + +T
Sbjct: 6   TSKQIRQLWLDFFKSKNHLEVESKSLVPENDPSLLWINSGVATLKDYFSGKKVPPSKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ LTK    D 
Sbjct: 66  NSQKSLRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEYAFEFLTKVLKFDV 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T + ED +    W K+ G+  + +I      NFW M   GPCGPC+EIF+D+G  
Sbjct: 122 NKLYFTYFLEDLDTKDYWLKL-GIKEEHLIAGNRKTNFWDMGI-GPCGPCTEIFYDRGSK 179

Query: 183 IPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                  L     E +R+IEIWN+VF QF    +     L   +IDTG GLER+ ++LQ+
Sbjct: 180 YDSRGIELLKEDIENDRFIEIWNIVFSQFNNDGENNYTPLISKNIDTGAGLERIVSILQD 239

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLIAD 288
              N+D DLF  +I   E++T  +Y+  N               ++I DH+R+    I D
Sbjct: 240 GPTNFDTDLFLPIIHQIEKMTSFRYDIENYFKKEEKQSKINSYFKIIADHIRAVVNAIND 299

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N  RGY++RR++RRA    + LG  E  +  L+  +   +             + 
Sbjct: 300 GVEPSNTFRGYIIRRLIRRAYRTGKKLGIKEAFLYKLVNVVKNTLIYDI-----DVDRVS 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           E ++ E+  F KT++ G +LL   +     ++  +  VAFKL++T G P+++ Q+IL  +
Sbjct: 355 EVIKKEELLFEKTIENGEILLQKEIE--KNNKQFDFAVAFKLFETFGFPIELTQEILAEK 412

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D+  F +  +E+ ++       LG   T      +K++   +QFIGY  L+    
Sbjct: 413 NIE-LDMDQF-KIYQERHAQLSMGEKELGMKKTVNSLALVKDQI--SQFIGYSHLK---- 464

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                + +  +  + + +E++   Q+  V+FDQTPFYA AGGQ 
Sbjct: 465 -------------------AKAKIVFLADEEQEIEQSSEHQESYVIFDQTPFYATAGGQK 505

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G  + +  +++I  V K     F++H  +  G+L     + L +D  NRR L  NHS
Sbjct: 506 HDQGWIVQNNNKIKIKQVFKDK---FLNHVHILEGVLDKNQEVFLEVDEVNRRNLERNHS 562

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           +THLL  +L    G+ + Q GS    + L FD    K  T  EL  I++ VN  I +++ 
Sbjct: 563 STHLLFKSLREQYGAQIKQLGSDNNEERLTFDFPLDKKPTQKELNQIQNRVNSYIKEDVE 622

Query: 649 VVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
                 + ++A    A   L   +Y D   V  V+++     ++ LCGGTH++ T  I  
Sbjct: 623 RHYLETSIKEAEKLNAVMTLEEAEYMDPKNVRLVQFKG---ITTDLCGGTHIAKTSLIER 679

Query: 708 LYIVSESSIRAGIRRIEAITGQR-----ARSHLMGQDEKLKSL----------------- 745
             IVS  +  +G+ RI AIT                 + L  L                 
Sbjct: 680 FKIVSCQNKGSGVFRIRAITTNEKISSYCFEAFKEHWDTLMKLWDKNHQLDSTYRGVSSL 739

Query: 746 --ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             +   ++    +   +E+   + + LQ   +  K  +  +  S + +   N   ++   
Sbjct: 740 NFSDDWELRLNEIEQYLEKAKADNKILQKKASLAKENVEFKLDSANILELENRQIYLDLN 799

Query: 804 VDSKE-LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           VDS   LK +   L++K  +  I  V    +    ++ + +++   R    +L  L++  
Sbjct: 800 VDSVHNLKLLAVNLREKYTN--IDFVLGQHQNMRLLITIASKNKQSRNIFEELNSLNSI- 856

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                GGG   + Q+   N     + ++ +   L+
Sbjct: 857 ----KGGGSDILVQA---NMVWEPEVVSKIKQILQ 884


>gi|213648094|ref|ZP_03378147.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 465

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 246/473 (52%), Positives = 324/473 (68%), Gaps = 20/473 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  EL + +  +E+ L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVL 360

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 361 KTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK 419

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
            +D   F  A+EEQR RAR  S G G+     I         A++F GYD L 
Sbjct: 420 -VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE 465


>gi|289758684|ref|ZP_06518062.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289714248|gb|EFD78260.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85]
          Length = 702

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 253/714 (35%), Positives = 374/714 (52%), Gaps = 59/714 (8%)

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           +D  R++ TVY +D+EA +LW++++GL A++I R    DN+WSM   GPCGP SEI++D+
Sbjct: 1   MDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDR 60

Query: 180 GECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLER 232
           G    P G P  SE+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG+ER
Sbjct: 61  GPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVER 118

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADG 289
           +A VLQ+  N Y+ DL + +I    +V    Y+     + V +R+I DH R+++ LI DG
Sbjct: 119 IALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDG 178

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P N+GRGYVLRR++RR +  A+LLG    ++  L+  +   MG +YPEL+     I  
Sbjct: 179 VSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISR 238

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
              +E+  F +TL  G  L + V S   K    +L+G  AF L+DT+G P+++  ++   
Sbjct: 239 IAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAE 298

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
            GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D LR   
Sbjct: 299 TGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRS-- 355

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVVFDQTP 519
                                 + +  I   G+ V          A  GQ+VE+V D+TP
Sbjct: 356 ---------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTP 394

Query: 520 FYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +++  +
Sbjct: 395 LYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAV 454

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  +   +
Sbjct: 455 DPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQV 514

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S  LCG
Sbjct: 515 EEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFSLELCG 570

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LKV    
Sbjct: 571 GTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEE 630

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEV 804
           V  RV  + E  R  +    + ++               +I +V  ++H +S V
Sbjct: 631 VPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAHRMSGV 684


>gi|153217607|ref|ZP_01951288.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113445|gb|EAY32265.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 593

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/642 (38%), Positives = 354/642 (55%), Gaps = 58/642 (9%)

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
           + Y+     + RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG     
Sbjct: 3   IGYQDLTNQSLRVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAF 62

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              L+  L   MG+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++
Sbjct: 63  FHKLVGPLAEVMGTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQLS-GQV 121

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           L+G+  FKLYDT+G P D+  D+   RG + ID   F QA+EEQR RAR        G  
Sbjct: 122 LDGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAREA------GQF 174

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
              + SL +    T+F GY   RG                        S+V+ +  +G  
Sbjct: 175 GTDYNSLIKSATNTEFCGYTASRG-----------------------QSVVREMFVEGAE 211

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V    +G K  +V D TPFYAE+GGQ GDTG    D     + D QK    I  HH ++ 
Sbjct: 212 VSTLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAI-AHHGVLA 270

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           +G+L     +   +D + R  +S+NHSATHLLH AL  +LG HV+Q GS +  + LRFD 
Sbjct: 271 QGVLAIGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDF 330

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H + +T AE+K +E  VN  I  N  + T IMN ++A A GA AL G KY+D+VRV+S+
Sbjct: 331 SHLEAMTPAEIKEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM 390

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGG H S+TG+I L  I+SE  I AGIRRIEA+TG+ A  +       
Sbjct: 391 -----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDY------- 438

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNF 796
                  L V Q     +V E+  + + L+    + K +L  ++         +IA VN 
Sbjct: 439 -------LDVQQAQHDAKVSEMAAKAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNV 491

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +   ++  D+K L+ ++D L+ ++ SGIIML G   E K  ++  VT DL ++  A +L 
Sbjct: 492 LVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNVAEGKVGLIAGVTNDLTNKVKAGELV 550

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + A  + GG GGGRP MAQ+GG + +    A+  V +++ +
Sbjct: 551 NMVALQV-GGKGGGRPDMAQAGGTDAHALPSALESVDAWIAE 591


>gi|303388536|ref|XP_003072502.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506]
 gi|303301642|gb|ADM11142.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506]
          Length = 864

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 259/802 (32%), Positives = 418/802 (52%), Gaps = 66/802 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R +FL++F    H+++ SSS+IP  D +L+FTNSGMV FK    G+     + 
Sbjct: 2   MWTTEKLRRSFLDYFASKSHKIVSSSSVIPFEDDSLLFTNSGMVQFKKNLLGERD-DLRR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             +VQ+C+RAGGKHNDLD+VG+   HHT+FEM+GN+SFG YFKE AI  AW+ L     L
Sbjct: 61  ACSVQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEAIGFAWEFLVDVLKL 120

Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++ +LY+T Y+E D+E+  +W K   L +++++  +  DNFW M +TGPCGPC+EI +D+
Sbjct: 121 NKDKLYVTYYEELDKESGNIWLKY--LPSERVLSASYKDNFWEMGDTGPCGPCTEIHYDR 178

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                      +++    IEIWN+VF+++ +        L +  IDTG+GLER+ ++L +
Sbjct: 179 I-GNRDASELVNKDDPNVIEIWNIVFIEYNRTISG-LVPLERKCIDTGIGLERLLSILID 236

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296
             +NY ID F  +I+A E     KY        V  RV+ DH R+ +    D +  +N+G
Sbjct: 237 VRSNYLIDSFAVIIKAIEDRCNFKYNDTEESIDVAFRVVADHCRTIAVCTYDKVDFSNDG 296

Query: 297 RGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
            GYVLRRI+RRA+ YA  +LG  E ++  L+      +G    EL        + +  E+
Sbjct: 297 VGYVLRRILRRAVRYAHEVLGLKEGVLGELVGIAAHAIGI---ELKS-----VDCVNKEE 348

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F KTL +G+     +  + GK   ++G+  F LYDT+G P+D+ + +   R +  ID 
Sbjct: 349 LQFMKTLKKGIERFHKLAENNGK---ISGEDLFLLYDTYGFPVDLTEIMAKERNIK-IDY 404

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F    ++    ++                           +  D    SKF + D   
Sbjct: 405 TNFESFKQKAVEISKMSKGMK---------------------LNIDAGLQSKFPRTDDSF 443

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
              K  I+ T       K I+ +     E   G+++ +VFD+T FYAE GGQ+GDTG  I
Sbjct: 444 KYTKNSINATFFFGIEGKEIITK---PNEIPEGRELGLVFDKTCFYAECGGQVGDTGKII 500

Query: 536 -----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
                 D     + D Q   +G  VH  I+E          +   D + R+++  NH+ T
Sbjct: 501 FYDGEKDVGVFNVMDTQ-AIKGFVVHKGILEG---SASYQALQMYDQELRKKIMKNHTGT 556

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLL+  L TI+     Q GS + P+ LRFD    + +T+ EL+ +E  VN+ I  N  V 
Sbjct: 557 HLLNFFLRTII--QTEQRGSLVDPEKLRFDFEG-RKLTNQELEEVEKKVNEFIQSNTDVE 613

Query: 651 TRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              ++RE A+ S     +   +Y ++VRV+++  +  G+    +CGGTHV++  +I    
Sbjct: 614 AITLDREQAMESPNIVRMRNEEYPEKVRVITM--KANGLTIEEMCGGTHVTNVSDIGKFR 671

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-----GRVEEIW 764
           I+SE+ + A  RRI A+TG++A+   M  +  L  L+    V+    +      +VE + 
Sbjct: 672 IISETGVSANTRRIVAVTGKKAQELDMEAEIYLSKLSIGEVVNVDKTIPLFYRQKVEVLN 731

Query: 765 EEYRKLQLIHAKRKLQLNVEDL 786
           ++ +K     ++ +   N +++
Sbjct: 732 QKNKKKGEELSRAQYAKNKKEI 753


>gi|238063896|ref|ZP_04608605.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885707|gb|EEP74535.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 636

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 256/654 (39%), Positives = 367/654 (56%), Gaps = 54/654 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I+  +L  F+ NGH ++PS+ L   +DP L+F N+GMV F   F GQ+ P Y   
Sbjct: 1   MKTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQTPPYPRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R      D+D VG+T+RH TFF+M GNFSFG YFK  AI LAWDL+T+     
Sbjct: 61  VSVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKAGAIPLAWDLVTRSVAEG 116

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F LD  R++ TVY +D+EA ++W+ + G+ A++I+R    DNFWSM   GP GPCSE++
Sbjct: 117 GFGLDPERVWATVYLDDDEAAEIWRSV-GMPAERIVRRGKKDNFWSMGIPGPAGPCSELY 175

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGL 230
           +D+G    G   G   + +RY+E WNLVFMQ+E  +   +        LPK +IDTGMGL
Sbjct: 176 YDRGPDY-GREGGPEVDEDRYLEFWNLVFMQYEIADVTSKEDFRIVGELPKKNIDTGMGL 234

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----------NNIVNHRVIVDHLR 280
           ERMA++LQ   N Y+ID  + ++  + ++TG +Y             + V  RVI DH+R
Sbjct: 235 ERMASILQGVDNLYEIDEVRPILARAAELTGKRYGAHSGHVAAQSHPDDVRLRVIADHVR 294

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340
           ++  LI DG+ P+NEGRGYVLRRIMRRA+   RLLG+ E  +  LLP     M  +YPEL
Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPEL 354

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398
                 I +   +E++ F  TL  G  +LD  ++         L+GD AF+L+DT+G P+
Sbjct: 355 ATEFDRIAQYAYAEEDAFLATLRAGTTILDTAIAETKSAGKPALSGDKAFQLHDTYGFPI 414

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457
           D+  +I   +GLA +D   F + + +QR+RA+A +    +G T+   + S+ +  G  +F
Sbjct: 415 DLTLEIAAEQGLA-VDADGFRRLMADQRARAKADARARKTGHTDLSAYRSVLDAGGPVEF 473

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
            GY  L                          S V+A++  G+ V  AV G  VE+V D 
Sbjct: 474 TGYTELN-----------------------RESRVRAVLSGGDQVGAAVEGDTVELVLDT 510

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ  D G     G ++++ DVQ+   G+ VH A V RG +R   +    ID 
Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRARVVRGEVRAGENGYAEIDV 570

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             RR +S +H+ATHL+H  +   LG   +Q GS   P  LRFD      +  + 
Sbjct: 571 TRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSV 624


>gi|67925719|ref|ZP_00519029.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501]
 gi|67852440|gb|EAM47889.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501]
          Length = 615

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 245/630 (38%), Positives = 369/630 (58%), Gaps = 41/630 (6%)

Query: 1   MSNVS------SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE 54
           M+  +       IR  FL+F+ +  H++LPS+SL+P  DPT++ T +GM+PFK IF GQ+
Sbjct: 1   MTTTTPFLTGQEIRDRFLQFYSQYKHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQK 59

Query: 55  KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
           +  +   TT QKC+R     ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L 
Sbjct: 60  QSDFPRATTSQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELS 115

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           TK + L    + ++V++ D+EAFK+W++I G+   +I R+   DNFW    TGPCGPCSE
Sbjct: 116 TKVYQLPPENIVVSVFENDDEAFKMWEEIIGVPPQRIKRMGEKDNFWKAGPTGPCGPCSE 175

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +++D    + G      E+  R+IE +NLVFM++ +    +   L   +IDTGMGLERMA
Sbjct: 176 LYYDFHPEL-GDDDIDLEDDSRFIEFYNLVFMEYNRDADGKLTPLQNKNIDTGMGLERMA 234

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291
            +LQ+  NNY+ DL   +I+ +  +  + Y+       V+ +VI DH+RS   +I+D I 
Sbjct: 235 QILQKVPNNYETDLIFPIIETAANIANINYQKATEKTKVSLKVIGDHVRSVVHMISDNIT 294

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            +N  RGYVLRR++RR + + RL+G     +  +          AYP++ +    I+  L
Sbjct: 295 ASNTDRGYVLRRLIRRVVRHGRLIGIEGKFINEVAETAIQLSQKAYPQVRERDSFIKAEL 354

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
             E+  F KTL+RG  LL  ++S   K   ++G  AF LYDT G PL++ Q+I     L 
Sbjct: 355 EREEATFLKTLERGEKLLAEIISKTEKQGQISGVDAFTLYDTFGFPLELTQEIAEESNLT 414

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +DI  F   +E+Q+ R++A    +   T +     L E    T+F+GY  L+       
Sbjct: 415 -VDIEGFEVEMEQQQERSKAAHETIDL-TVQGSLDKLAEHIHPTEFLGYTDLQS------ 466

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                            ++ V+A++ +G+ VE A +G ++++V D+TPFY E+GGQ+GD 
Sbjct: 467 -----------------TAKVEAVLIEGKSVETATAGTEIQIVLDKTPFYGESGGQIGDR 509

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G+ + +++ DVQK++ GIFVH   VERG +     L  TID   RR++  NH+ATH
Sbjct: 510 GFLTGEDLVIRVDDVQKES-GIFVHFCRVERGQVSVNEHLKATIDRSCRRRVQANHTATH 568

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           L   AL  ++   +SQ GS    D L+FD+
Sbjct: 569 LFTAALKKVVDDSISQAGSLGDFDRLKFDL 598


>gi|321466736|gb|EFX77730.1| hypothetical protein DAPPUDRAFT_54067 [Daphnia pulex]
          Length = 992

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 278/895 (31%), Positives = 433/895 (48%), Gaps = 88/895 (9%)

Query: 2   SNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           S+   IR  FL+FF +++ H  +PSSS++P  DP+L F N+GM  FK IF GQ  P +Q 
Sbjct: 15  SSSKEIREKFLDFFAKEHLHSRVPSSSVVPYGDPSLAFVNAGMNQFKPIFLGQAAPQHQR 74

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKC+R GGKHNDLD+VGR   HHTFFEMLG++SF  YFK+ A  +AW LLT+ + +
Sbjct: 75  AVNSQKCIRVGGKHNDLDDVGRDGYHHTFFEMLGSWSFNDYFKKEACSMAWQLLTQVYRI 134

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
             ++L+IT +          DEE  ++W  + G++AD I+     DNFW M   GPCGPC
Sbjct: 135 PPQKLFITYFGGNQSLGLPSDEECREIWLSL-GVAADHILPFGMKDNFWEMGLVGPCGPC 193

Query: 173 SEIFFDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEI  ++            ++  E  +EIWNLVFMQ+ + + Q    LP   IDTGMGLE
Sbjct: 194 SEIHVNKANLETSLARTLVNQGTEEVVEIWNLVFMQYNRISNQVLEKLPAHHIDTGMGLE 253

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIV---------NHRVIVDHLRS 281
           R+   LQ K +NYD DLF  LI A  Q++ G+ Y+G+  +          +R++ DH R 
Sbjct: 254 RLVAFLQNKNSNYDTDLFLPLIDAVHQISGGVPYQGSYDMQSAQGQRDWAYRLLADHSRM 313

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPEL 340
            +  +ADG  P N  R   LRR+MR+AM  +R        L++ L   +   MG  YPEL
Sbjct: 314 ITVALADGAFPDNNHR---LRRVMRQAMVTSRKWFNQDASLLLELSQRVADMMGGVYPEL 370

Query: 341 IQAKLLIEETLRSEDERFGKTLDR----------------------------GLVLLDGV 372
            +    +   LR E++ F   L +                            GL  L+  
Sbjct: 371 SRNLSNVHMLLRFEEDIFRDHLAKSGREWSAIVNQFPELSALPTDQQPGLIAGLRQLEDW 430

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
               G D+ ++G +AFKLY THGL  D +Q ++  +G   +D   F+Q + ++R   +  
Sbjct: 431 RRSSGSDK-ISGSLAFKLYSTHGLQEDSLQLLVQLKGW-NVDWPQFHQLMADERMSTKIQ 488

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
           S    +  + +   +   K   T +   D+   +       K               + V
Sbjct: 489 S---SAAVSSQFQCATSLKVAPTVWQCQDVCSRNAEGHYTFKPFD------------ATV 533

Query: 493 KAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
            A+V Q G  +EEA +G +V V+ D++ FY EAGGQ+ DTG  +      Q+ ++++  +
Sbjct: 534 TALVSQDGRTIEEAATGDRVAVIADKSCFYYEAGGQVSDTGRLLWPTGAGQVEEIRRVGD 593

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I+ H   V  G LR   ++ + +D  NR     NH+ATHLLH A+  IL     Q  S 
Sbjct: 594 HIY-HLIKVNEGNLRVNQTVQMMLDEDNRLNTMANHTATHLLHAAIKDIL-KVTCQKSSY 651

Query: 612 ITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLG 669
           +TP+  RF+    +   T   +   E +V + I Q L V   ++    A++  G   + G
Sbjct: 652 VTPEHFRFEFGLFQSEFTLEMISQAESSVRNWICQRLAVDRLMLPLHQAVSLDGITLVPG 711

Query: 670 TKYNDRVRVVSVEYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
             Y D V V+ V  E G     S   C GTHV +T ++    I+S  S   G R + A+T
Sbjct: 712 ESYPDMVSVIRVAQESGKDEAISLEPCCGTHVRNTADLEEFAILSVKSAGIGSRSVRAVT 771

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDL 786
              A+  L   D+  + L          +V +   + + + ++L     + +  ++ +D+
Sbjct: 772 RATAKQSLCRADDLKRELNLL-----EEMVNKFNAVEFTQLKELDKTLKQLRETISSDDV 826

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                 +   +S  + +++S  ++        ++    +    +S    AS +IV
Sbjct: 827 PLIVNKE---LSFRLEKLES-YVRQAAQETLARLMQHQVE-SAVSHAGPASFVIV 876


>gi|47459274|ref|YP_016136.1| alanyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|81614196|sp|Q6KHK5|SYA_MYCMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|47458603|gb|AAT27925.1| alanyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 905

 Score =  592 bits (1526), Expect = e-166,   Method: Composition-based stats.
 Identities = 274/954 (28%), Positives = 455/954 (47%), Gaps = 113/954 (11%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M +   IR  +L FF+  GH ++PS SLIP  D +L++ NSG+   K+ F+G++ P  + 
Sbjct: 1   MKS-KEIRNKWLNFFESKGHLIIPSKSLIPIKDDSLLWINSGVATLKDFFSGKKIPPSKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI   ++ +      
Sbjct: 60  LTNSQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAINFGFEFIFDVLKF 115

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +++ T + ED E  ++ K ++ +   +II+ +   NFW M   GPCGP  EIF+D+G
Sbjct: 116 DREKIFFTYFSEDLETLEILKSLN-VPDSQIIKGSRKTNFWDMGN-GPCGPNLEIFYDRG 173

Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L  +  E +RYIEIWN+VF QF         +L + +IDTG GLER+A +L
Sbjct: 174 PKYSNRGIELLKNDIENDRYIEIWNIVFSQFNNDGNGNYELLKQKNIDTGAGLERLACIL 233

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLI 286
           Q+   N++ DLF  +I+  E+++  KY+ +N            +N ++I DHLR++   I
Sbjct: 234 QDTPTNFETDLFLPIIKEIEKLSIYKYKIDNYFLKDKIQEKINLNFKIISDHLRTAVNAI 293

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-EPLMMHLLPALCTEMGSAYPELIQAKL 345
            DG  P+N GRGY++RR++RRA      LG   +  +  +   +   +   Y   ++   
Sbjct: 294 NDGAKPSNNGRGYIIRRLIRRAYRSGIFLGIKGKSFLHKMTQIVRDSL--IYDIDVEK-- 349

Query: 346 LIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGD------------------- 385
            + + ++ E+E F KT+  G+ LL + + S   KD  ++ +                   
Sbjct: 350 -VSKIIKKEEEMFSKTISEGINLLKEKIKSKFPKDNSIDIENKSQVAKYFKENNLTFDFS 408

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
           +AF+L+ T G P++I+++IL       +DI +  + LEE  +++R+ +    S   +K+ 
Sbjct: 409 IAFELFSTFGFPVEIIKEILEDEYEIELDISNLPKYLEEHANKSRSEN----SSAMQKVI 464

Query: 446 FSLK-EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
            SL+  K   ++F+GY  L+                        S I+  + +  EI   
Sbjct: 465 NSLELVKEKVSEFVGYSTLKTK----------------------SKILYLLNETEEIHFT 502

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
               +   ++ D+TPFYA AGGQ  D G  I D  R+++ +V K      VH     +G 
Sbjct: 503 NSENEISYLILDKTPFYATAGGQRHDKGLLIQDKNRIEVLEVFKDKHLNNVHKV---KGK 559

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +     +   +D   R  L  NHS THL+ +ALS   G  + Q GS    + L FD   S
Sbjct: 560 ILKSELINAEVDSNIRIGLERNHSGTHLVFNALSREFGKEIEQLGSDNNEERLTFDFPLS 619

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEY 683
           K  +  E+K++E  VN+ I  ++     I   E A    A   L   +Y D   V  V +
Sbjct: 620 KKPSWEEIKNVEKRVNEYINMSVDREYIITTLEGAKKLNAVMTLEEQEYMDPNEVRIVNF 679

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---- 739
                 ++ LCGGTH+ +T +I    I+S  S      RI+AIT ++     +  +    
Sbjct: 680 PK---ITADLCGGTHIENTKKIETFKIISLDSKGKNKFRIKAITSKKIVEEYLKDEISKN 736

Query: 740 --------EKLKSL----------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                   EK KSL          +  L      +   +++   +Y+KL L +++ KL+ 
Sbjct: 737 KLVLENLIEKNKSLFQGYKMNFSWSKNLDEQNEQITKHIDQARSDYKKL-LKNSENKLEK 795

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
              D S  K  +   +  +   +    L+S++  L++K    I++L     + K  + + 
Sbjct: 796 LESDFSIMKFKNTEIIFDM--NLKMASLQSLVATLREKNPKAIVILGSEISKGKFFICVG 853

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-PNGNKADQAIAGVAS 894
                   F+A D++ +  +    G GGG   ++Q        KA+     +  
Sbjct: 854 -----SKEFSAKDISNIIFEK-YKGKGGGNNILSQGSIDKKIEKAEDLFELLKE 901


>gi|312084084|ref|XP_003144129.1| alanyl-tRNA synthetase [Loa loa]
 gi|307760706|gb|EFO19940.1| alanyl-tRNA synthetase [Loa loa]
          Length = 839

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/808 (31%), Positives = 391/808 (48%), Gaps = 63/808 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-----PV 57
           +   IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  FK +F G +        
Sbjct: 23  SAQQIRLSFLEYFKEHDHTYVPSSSVIPEDDNSVTFVNAGMNQFKPLFLGAKFTEGKFAA 82

Query: 58  YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            + V   QKC+R GGKHND D+VGR   HHTFFEMLGN+SFGGY K  A + AW+ LT  
Sbjct: 83  LRNVVNWQKCIRVGGKHNDFDDVGRDLTHHTFFEMLGNYSFGGYSKAEACRYAWNFLTDV 142

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
             +   RLY+T +         ED E   +W K+ G+  D+++    N NFW MAETGPC
Sbjct: 143 LRIPADRLYVTYFSGDENLKLKEDHECRDIWIKL-GVPEDRVLGCCFNHNFWEMAETGPC 201

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D            +      +EIWNLVFMQF +        LP + +D GMG
Sbjct: 202 GPCTEIHYDLIGNRKAQK-LVNSNNPTVVEIWNLVFMQFTRDMSGRISSLPTLYVDCGMG 260

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KY---EGNNIVNHRVIVDHLRSSSFL 285
            ER+ +++Q   + YD DLF  L++   + + + +Y    G+    +R+I DHLR++  +
Sbjct: 261 FERLVSIVQGLRSAYDTDLFLPLMEIICKYSKVGRYSGRSGDIDTAYRIIADHLRAACIM 320

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           I+DG+ P +  RGY LRR++RRA     L LG     +  L+P     +   Y  +   +
Sbjct: 321 ISDGVEPGSRNRGYHLRRVLRRAALNLTLTLGAERGTLASLVPDFVNHITLLYDSVAACE 380

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            +I +T+ SE++ F K+ D+G  LL+  ++   +  IL G++A+ L   +GLPL I+Q +
Sbjct: 381 TIIVKTVMSEEQLFWKSYDKGTKLLEHNIA--SQQHILPGEIAWMLSGNYGLPLAIIQKV 438

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              +GL  +D+  F+  L   +   +A          EK+                  L 
Sbjct: 439 CNEKGLK-VDVDGFHHCLTNFQKTQKAEEEPWQKVDLEKMM-----------------LS 480

Query: 465 GSKFMKEDRKVLCQKPP---IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
           G K   +  K  C++      +  +   ++V      G+ V    SG+   VV D T F+
Sbjct: 481 GVKATDDSEKYCCKRIKLGEYEFPSRTGAVVAIFDVNGKSVMALKSGEGGSVVMDSTVFF 540

Query: 522 AEAGGQLGDTGCAIGD-----------GIRLQITDVQKKAEGIFVHHAIVERG-ILRTEM 569
           AE GGQL D G                 +   + +  K+  G  +H   V  G  L   +
Sbjct: 541 AEQGGQLYDRGILRDSLNVIFMSQKCRNVIFTV-NSAKRRNGYIIHTGEVANGQTLEKGL 599

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPIT 628
           +LV  ID + R  L   H+ATH+LH AL  +  + V Q GS I PD L FD     +  T
Sbjct: 600 NLVQIIDPKQRFSLMCGHTATHILHFALEKVFDASVRQMGSFIGPDKLHFDFFVPDEKFT 659

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNRED----AIASGAAALLGT-KYNDRVRVVSVEY 683
             +++ +   VN II  NL V  + + + +         A  +     ++   R++++E 
Sbjct: 660 LEKIEEVMATVNMIIESNLNVTVKYILQNELGSMHKNFSAFDISQEAAFDGSYRIITIES 719

Query: 684 ED-GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G      C GTHV +TG+I    I+ + S  A +RRI A+T   A   +    +  
Sbjct: 720 SQLLGQDIIEPCCGTHVCNTGDIGRFVIIGQKSRSANVRRIYAVTNTTALESIHNATKLN 779

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKL 770
             L+  L       +   + + E  + L
Sbjct: 780 NELSHALSDFSETFIDTHKFMKEFQKNL 807


>gi|187469665|gb|AAI66719.1| Aars2 protein [Rattus norvegicus]
          Length = 746

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 233/731 (31%), Positives = 364/731 (49%), Gaps = 56/731 (7%)

Query: 5   SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58
           +++R  FL FF+ ++GH L+PS+S+ P  DP+L+F N+GM  FK IF G   P      +
Sbjct: 34  AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 93

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117
           + V   QKCVRAGG+HNDL++VGR   HHTFFEMLGN++FGG YFK+ A  +AW+LLT+ 
Sbjct: 94  RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 153

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RL+++ +        D D E   +W  + G+ A +++     +NFW M +TGPC
Sbjct: 154 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 212

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D                 + +E+WNLVFMQ  ++      +LP+  +DTGMG
Sbjct: 213 GPCTEIHYD---------LAGGMGPPQLVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 263

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLR 280
           LER+  VLQ K + YD DLF  L+ A  Q           G   EG     +RV+ DH+R
Sbjct: 264 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 323

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + S  IADG+ P   G   VLRRI+RRA+ Y+  +L      + +L+P +   +G+AYPE
Sbjct: 324 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 383

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLP 397
           L +  + I   +  ++  F  +L RG  ++D  +  LG  ++   +VA+ L      G+P
Sbjct: 384 LQKNSVKIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 443

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           LD++Q +L  +G+  +D     Q        A+  +              L     A + 
Sbjct: 444 LDLVQLMLEEKGVK-LDTAGLEQL-------AQKEAQHRAQQAEAAQEEGLCLDVHALEE 495

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
           +    +  +    +    L      +     + +++   + G  V     GQ+  ++ D+
Sbjct: 496 LHRQGIPTTDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEGQRCGLLLDR 555

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576
           T FYAE GGQ  D G  I  G +  +  V + +  G F+ H  +    L+    + L +D
Sbjct: 556 TNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQVGDRVQLYVD 615

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    + H+ATHLL+ AL   LG    Q GS + P+ LRFDV    P+T+ +L+++E
Sbjct: 616 KAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPLTTEQLRTVE 675

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------RVVSVEYEDG 686
             V + + Q+ PV    +             L   Y D V          + ++   +  
Sbjct: 676 SYVQEAVGQDKPVYMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAQALAPASQAA 735

Query: 687 GVHSSALCGGT 697
              S  LC GT
Sbjct: 736 LQTSVELCCGT 746


>gi|293363884|ref|ZP_06610620.1| alanine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552374|gb|EFF41148.1| alanine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 875

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 265/933 (28%), Positives = 436/933 (46%), Gaps = 98/933 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  +L F+++  H ++P+ SL+P ND +L++ NSG+   K+ F+G++ P    +
Sbjct: 1   MNSKKIRQDWLNFWEQKQHLIVPTKSLVPVNDNSLLWINSGVATLKDYFSGKKNPPSLRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  QK +R     ND++NVG T RHHTFFEMLGNFS G YFK+ AI  A + L     LD
Sbjct: 61  TNSQKAIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEAIYWASEYLNNILKLD 116

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + +L+ T + ED E  KLW    G     +I      NFW +   GPCGP +EIF+D+G 
Sbjct: 117 KEKLFFTYFHEDLETKKLWMD-CGYDESHMIPGDKKTNFWEVGS-GPCGPNTEIFYDRGA 174

Query: 182 CIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                   L     E +RYIEIWN+VF  +    +     L + +IDTG GLER+ +++Q
Sbjct: 175 KYDSRGIELLKEDLENDRYIEIWNIVFSTYNSDGEGNYTELKQKNIDTGAGLERIVSIMQ 234

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSSFLIA 287
           +   NYD DLF  +IQ  E+    KY+ NN             + ++I DH+R+ +  IA
Sbjct: 235 DAPTNYDSDLFIPIIQEIEKYVEFKYDTNNYFKKDLEQEKINTSFKIIADHIRTVANAIA 294

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKLL 346
           DG   +N GRGY+LRR++RR++     L       +  L+  + + +   Y         
Sbjct: 295 DGAKVSNVGRGYILRRLIRRSIYKGMQLKVKSSLFLYKLVKIVKSTLPYEY-----DTKK 349

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +E+ ++ E+E F KT+++G  LL+  L      +I +G+  FKL +T+G PL++ ++IL 
Sbjct: 350 VEKAIKEEEELFAKTIEKGRKLLEKNLED--NTKIFSGETTFKLLETYGFPLELTKEILE 407

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL-KEKYGATQFIGYDLLRG 465
            + ++ I++  F QA +   + +R    G      +K+  SL   K     F+GY+ +  
Sbjct: 408 EKNIS-INMEEFEQAKQNHANASR----GKKISGMDKVINSLSLLKSKIDNFVGYEQVE- 461

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                                 ++S +  +      +E+  +     ++ + TPFYA +G
Sbjct: 462 ----------------------ITSKILKLFNTENEIEQ--NDGISYLILESTPFYATSG 497

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D G  I D  +L I DV K   G  +H     +G +  ++ +   +D   R  L  
Sbjct: 498 GQKHDRGHLIQDKNKLIIIDVFKDKFGNHIHKV---KGKINKKLPIECFVDKTIRLGLER 554

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHS THLL+ AL  ILG  + Q GS    + L FD+      T+ E+  IE  V   I Q
Sbjct: 555 NHSGTHLLYCALRNILGKQIVQLGSDNNEERLTFDLPADTKPTNEEILKIEKLVKTYIQQ 614

Query: 646 NLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +       M+ + A    A   L   +Y D+  V  V++++    ++ LCGGTH+S+T +
Sbjct: 615 DAKREYLQMSIDKAKQINAILTLEEGEYMDQNNVRIVKFDN---ITADLCGGTHLSNTAK 671

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---------EKLKSLASFLK----- 750
           +    IV      AG+ RI+AI+  +  +  + ++           +  +  F K     
Sbjct: 672 LENFKIVEVEKKSAGVFRIKAISSNKLVNDYLTKEIEKFELELNVVITKIKDFDKNYSVL 731

Query: 751 -VSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
             ++ ++   +E I     +    L+    K + Q + +  S   I   N++    S  +
Sbjct: 732 LNNKNDLSNYLESIKIAIDKANNDLKDFSKKSQKQADFDFESVEFIKIKNYLLSFTSAQN 791

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG- 864
             ++K +   L++K    I +      E K   + + +         +D  +   K+   
Sbjct: 792 PGQVKLISTTLREKNNQSINL--AYFAEGKNLTISLAS-------KVIDSNQYLQKIFTK 842

Query: 865 -GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             G GGG   M+   G      +     +   L
Sbjct: 843 FNGRGGGNAIMSM--GKCLANPNDIFEYIKELL 873


>gi|281307084|pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Alasa
 gi|281307085|pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Glysa
 gi|281307086|pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Sersa
 gi|281307087|pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Amppcp
 gi|281307088|pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           In Complex With Amppcp, Ala-Amp And Pcp
          Length = 441

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 237/442 (53%), Positives = 309/442 (69%), Gaps = 14/442 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 2   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW LLT  K F 
Sbjct: 62  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 300 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 360 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 418

Query: 412 GIDIISFNQALEEQRSRARAHS 433
            +D   F  A+EEQR RAR  S
Sbjct: 419 -VDEAGFEAAMEEQRRRAREAS 439


>gi|281307089|pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307090|pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307091|pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307092|pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Alasa
 gi|281307093|pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Glysa
 gi|281307094|pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Glysa
 gi|281307095|pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Sersa
 gi|281307096|pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
           G237a In Complex With Sersa
          Length = 441

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 236/442 (53%), Positives = 308/442 (69%), Gaps = 14/442 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 2   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW LLT  K F 
Sbjct: 62  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 181

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DT MGLE
Sbjct: 182 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE 241

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+ L
Sbjct: 300 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           ++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D+   R + 
Sbjct: 360 KTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK 418

Query: 412 GIDIISFNQALEEQRSRARAHS 433
            +D   F  A+EEQR RAR  S
Sbjct: 419 -VDEAGFEAAMEEQRRRAREAS 439


>gi|308189958|ref|YP_003922889.1| alanine--tRNA ligase [Mycoplasma fermentans JER]
 gi|307624700|gb|ADN69005.1| alanine--tRNA ligase [Mycoplasma fermentans JER]
          Length = 851

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 268/886 (30%), Positives = 438/886 (49%), Gaps = 97/886 (10%)

Query: 22  LLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG 81
            + S SLIP NDP+L++ NSG+   K+ F+G++KP    +T  QK +R     ND++NVG
Sbjct: 2   RVESKSLIPVNDPSLLWINSGVATLKDYFSGKKKPPRNRLTNSQKAIRT----NDIENVG 57

Query: 82  RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWK 141
            T+RHHTFFEMLGNFS G YFK+ AI   ++ LT E  +D ++LY+T + ED +  K W 
Sbjct: 58  VTSRHHTFFEMLGNFSIGDYFKKEAIAFGYEFLTNELQIDPKKLYMTYFAEDLDTKKYWM 117

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSEEGERYI 198
           +  G+    +I  T + NFW +   GPCGP +EIF+D+G         L     E +RYI
Sbjct: 118 E-QGVEESHLIPGTRDTNFWDVGS-GPCGPDTEIFYDRGPKYNKRGLELLKKDIENDRYI 175

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           EIWN+VF QF    +     L + +IDTG GLER+A+++Q+   NYD DLF ++I+  E+
Sbjct: 176 EIWNIVFSQFNNDGENNYTELKQKNIDTGAGLERIASIMQDAPTNYDSDLFINIIKEIEK 235

Query: 259 VTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
              +KY+ +N             N +VI DH+R+    IADG   +N GRGY++RR++RR
Sbjct: 236 YATVKYDIDNYFKKDKKQTEINTNFKVIADHIRTVVNAIADGAKVSNVGRGYIIRRLIRR 295

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           ++     LG     +  L+  +   +   Y      K  +   ++ E+  F +T+++G +
Sbjct: 296 SIYKGMQLGVKGLFLHKLVDVVQDSLPYEY-----DKKPVVVAIKEEELAFHQTIEKGKL 350

Query: 368 LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427
           LL+  + +  K +I +G+ AF L +T+G P+++  +IL  + +  +D+ +F +A E   +
Sbjct: 351 LLEKFMDN--KTKIFSGEDAFNLLETYGFPIELTVEILAKKNIK-VDLKAFEEAKERHAN 407

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
            +R    G      +K+  SL    G   +FIGY  L                       
Sbjct: 408 LSR----GEKVNGMDKVINSLALIKGKIGEFIGYTDLES--------------------- 442

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              S +  ++   E V+      +  ++ D+TPFYA +GGQ  D G  +    +++I DV
Sbjct: 443 --KSKILKLLNNEEEVKSLNG--EGYLILDKTPFYATSGGQNHDHGFILQGKNKIKILDV 498

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            K   G  +H      G +  + ++   +D + R  ++  HSATHLL  AL  +LG H+ 
Sbjct: 499 FKDKFGNHIHKI---EGKINNKDTVECYVDKEVRIGMARGHSATHLLFRALVKVLGPHID 555

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q GS IT + L FD    +  T  ++K IED ++  I QN+     + N + A   GA  
Sbjct: 556 QLGSDITEERLIFDFPADEKPTDEQIKKIEDIMHGWIKQNVEREYIVTNIKKAKEMGAIM 615

Query: 667 LLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +   +Y D   +  V+++     +  LCGGTH+  TG +    I       AG+ RI A
Sbjct: 616 TIDESEYMDPNNIRIVDFKG---ITKDLCGGTHLDRTGILEDFKITKVEKKTAGVFRIRA 672

Query: 726 ITGQR-ARSHLMGQDEKLKS-LASFLKVSQ--------------------GNVVGRVEEI 763
           +   +  + +L   ++ LK  L + +K +Q                     N+   ++++
Sbjct: 673 VASHKYVKQYLTELNQSLKEQLDALVKKAQSFDSKYQIKFTPNKDVEIECANIKKTIDKV 732

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
            E+ ++L     K K  +  +  S     +  +  ++  + DS ++K     L++K    
Sbjct: 733 HEDIKEL----IKNKSNITFDFDSVQLTKNKKYPYYLNIDFDSSQVKVAAATLREKFPEA 788

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           II+L   S      +L+ V   +LD   A  L +  A    G GGG
Sbjct: 789 IIVLGAKSNN---QILLCVAAKVLD---ANKLFQQIASKTNGRGGG 828


>gi|255527855|ref|ZP_05394703.1| alanyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255508466|gb|EET84858.1| alanyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 662

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 233/690 (33%), Positives = 381/690 (55%), Gaps = 41/690 (5%)

Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIV 276
           L   +IDTGMGLER+AT++Q   + +++D  + ++    +V  ++Y  +    ++ RVI 
Sbjct: 1   LKNPNIDTGMGLERIATIMQGTNSIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVIT 60

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH+RS SF+I+DGILP+NEGRGYVLRR++RRA  + + LG     +  L   +       
Sbjct: 61  DHVRSVSFMISDGILPSNEGRGYVLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGN 120

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTH 394
           Y EL + +  I++ ++ E+ERF +T+D G+ +L+  + +L    + IL+G+ AFKLYDT+
Sbjct: 121 YAELAEKRDYIKKVIKLEEERFDETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTY 180

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
           G P+++ ++IL  + +  +D+  FN+ ++ QR RARA          E    +       
Sbjct: 181 GFPIELTEEILEEKDMK-VDLEGFNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIE 239

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           T+F GYD L                         +S VK +++  E V   V G K  +V
Sbjct: 240 TKFNGYDTL-----------------------HTTSKVKILIKNEEFVSTMVEGDKGVIV 276

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            + TPFYAE GGQ+GD G    D  + ++ D +K   G  +H   V  G +  +  + L 
Sbjct: 277 TENTPFYAEMGGQIGDHGIISTDSFKAEVVDCKKNVAGKILHFVKVLSGTIGVDHQVTLN 336

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++   R  +  NH+ATHLL+ AL  +LG HV Q+GS +  + LRFD  H +  +  ELK 
Sbjct: 337 VNEARRNNIRRNHTATHLLNEALRKVLGEHVHQSGSYVDDERLRFDFNHFEAPSHEELKK 396

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E  VND I + L V T+ M+ E+A  +GA AL   KY D VRVVSV     G  S  LC
Sbjct: 397 VEALVNDEIVKVLNVQTQSMSLEEAKETGAIALFDNKYKDEVRVVSV-----GDFSKELC 451

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTHVS++GEI L  I+SE+ + AGIRRIEA+TG +A +++  +++ +K + + L+ S+ 
Sbjct: 452 GGTHVSNSGEIGLFKIISEAGVAAGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKLRCSEK 511

Query: 755 NVVGRVE--EIWEEYRKLQLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKEL 809
            ++ +++   +  + +  ++   K KL  + ED       ++  +   + ++ +VD   L
Sbjct: 512 EIIHKLDLQALELKEKDKEIAELKSKLAGSAEDEILNGFQEVKGIKLFTGVLKDVDGNAL 571

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
           + + D ++ K    +++L  +  E K   + + T++ + +  +   + +  A + GGGGG
Sbjct: 572 RDLADKIRNKGGECVVVLGSVV-EGKVQFVSMTTKEAIAKGVHCGKIIKEVAAIAGGGGG 630

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GRP MAQ+GG    K + AI    S L+K
Sbjct: 631 -GRPDMAQAGGKLPEKVEDAIGSCVSILEK 659


>gi|258616275|ref|ZP_05714045.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 632

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 246/666 (36%), Positives = 369/666 (55%), Gaps = 49/666 (7%)

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQF 208
           +   DNFW +   GPCGP +EIF+D+GE          E     E ERY+EIWNLVF +F
Sbjct: 1   MDVEDNFWDIGA-GPCGPDTEIFYDRGEAYNDLAEDDPENYPGGENERYLEIWNLVFSEF 59

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN 267
             +       LP  +IDTGMGLERM +++Q+ + N++ DLF  +I A E+++  +KY  N
Sbjct: 60  NHKPDNTFEPLPHKNIDTGMGLERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGEN 119

Query: 268 --NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
               ++++VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ + + LG  +  +  L
Sbjct: 120 PVTDISYKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRL 179

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILN 383
           +P +   M S YPE++Q K  IE+ +R+E+ERF +T++ GL +L+ V+  +  +    L 
Sbjct: 180 VPVVGEIMVSYYPEVLQQKEFIEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLA 239

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G   FKLYDT+G P+++ +++    GL  +D   F + ++ QR RAR+      S   + 
Sbjct: 240 GKDIFKLYDTYGFPVELTEEVAEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQS 298

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
               L +    ++FIGY                             S +  IV+   ++ 
Sbjct: 299 AL--LTDIKVESKFIGYTEQESD-----------------------SQLLVIVKGESLLN 333

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVE 561
           E   G+  +++FDQTPFYAE GGQ+ D G  + +   +   +TDVQK   G F+H   V 
Sbjct: 334 EVAEGE-AQMIFDQTPFYAEMGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV- 391

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           +  +    +  L ID   R ++  NH+ATHLLH AL  +LG H +Q GS + P  LRFD 
Sbjct: 392 KAPMSEGQTYHLLIDQSMRNRIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDF 451

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           TH   ITS EL  +E  VN+ I + +PV T   + + A   GA AL G KY   VRVV++
Sbjct: 452 THFGQITSDELAEMERIVNEKIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI 511

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S  LCGGTHV++T  I +  IVSES I AG+RRIEA+T + A   L  ++++
Sbjct: 512 -----GGWSIELCGGTHVANTENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQ 566

Query: 742 LKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDLSCHKIADVNFMS 798
           LK +A+ +K  Q   VV + E++ ++ R+LQ  + +   KL              +N  +
Sbjct: 567 LKQVATIVKSPQLKEVVSKAEQLQQQVRELQKENEQLASKLANQQAGDVFKDPETINGKT 626

Query: 799 HIISEV 804
            I ++V
Sbjct: 627 IIAAQV 632


>gi|324509264|gb|ADY43900.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 603

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 205/606 (33%), Positives = 304/606 (50%), Gaps = 37/606 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58
           +   + +R+ F+ FF    H  + SSS+IP  DPTL+F N+GM  FK IF G   P    
Sbjct: 4   VLTANEVRSAFINFFANREHTYVHSSSVIPFEDPTLLFANAGMNQFKPIFLGTVDPSSEL 63

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +     QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+LLT
Sbjct: 64  GRLRRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCNWAWELLT 123

Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           KE  +   +LY++ +  DE        E  ++W  I GL   +++     DNFW M + G
Sbjct: 124 KELGIPADQLYVSYFGGDEKAGLAPDDECRQIWLDI-GLPESRVLPFGMKDNFWEMGDVG 182

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           PCGPCSEI FD+           + +    +EIWNLVFMQ+ ++       LP   ID G
Sbjct: 183 PCGPCSEIHFDRV-GNRDASALVNADDPMVVEIWNLVFMQYNREEGGVLRELPMRHIDCG 241

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDH 278
           +GLER+  V+Q KT+NYD D F  +  A +            G +      + +RV+ DH
Sbjct: 242 LGLERLVAVMQNKTSNYDTDAFTPIFDAIQASVCVRAYSGKVGAEDSDGIDMAYRVVADH 301

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337
           +R+    ++DG  P + GRGYVLRRI+RR + YA   LG        L+P +   +G  +
Sbjct: 302 IRTLCVALSDGGRPDSTGRGYVLRRILRRGVRYANEKLGAPPGFFASLVPVVVRLLGDTF 361

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGL 396
           PEL +    + + +  E+ +F KTL+RG  L    ++ L  + +   GD+A++LYDT+G 
Sbjct: 362 PELRKDPETVMDIINDEEAQFLKTLNRGRSLFQKAVAALESEAKQFPGDIAWRLYDTYGF 421

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P+D+ Q +   + L+ +D+ +F Q     R +A   S    +   +     +       +
Sbjct: 422 PVDLTQLMAEEKQLS-VDMDAFEQC----RQKAVEMSSAGANKFRDTAELDVH-GIAKLK 475

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
             G      S                         V A++++G  V+   SG K  V+ D
Sbjct: 476 KDGVPSTDDSPKYDYSAVGPNDITAKYSFAKCEGQVLALLKEGTFVDSLYSGDKGAVILD 535

Query: 517 QTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +T FYAE GGQ+ DTG       +G   ++++VQ +  G  V    VE G +     L+ 
Sbjct: 536 RTNFYAEQGGQIYDTGVLTKIGDEGAEFEVSNVQMR-GGYVVLVGSVE-GNISIGDRLLQ 593

Query: 574 TIDYQN 579
            ID   
Sbjct: 594 AIDEFR 599


>gi|12045148|ref|NP_072959.1| alanyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|1351145|sp|P47534|SYA_MYCGE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3844871|gb|AAC71513.1| alanyl-tRNA synthetase [Mycoplasma genitalium G37]
 gi|166078929|gb|ABY79547.1| alanyl-tRNA synthetase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 900

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 248/946 (26%), Positives = 437/946 (46%), Gaps = 115/946 (12%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R T+L++F K  H +L S SLIP NDP+L++ NSG+   K+ F+ ++ P  + + 
Sbjct: 4   TTDKVRQTWLDYFAKKDHLVLASKSLIPINDPSLLWINSGVATLKDYFSARKTPPSKRLV 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+R     ND++NVG T+RH T FEMLGNFS G YFK  AI  A+DLL   + LD 
Sbjct: 64  NAQICLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKTEAIDFAFDLLVNYYQLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +R YITVY++DE  +K W K   +  + II+   + NFW +   GPCGPC+EI++D+GE 
Sbjct: 120 KRFYITVYEDDETTYKRWIK-HKIDKNHIIKCDKSRNFWDLGL-GPCGPCTEIYYDRGEK 177

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 G        E +RY+EIWN+VF QF          L + +IDTG G+ER+ +VL
Sbjct: 178 FDPKKIGEKLFFEDIENDRYVEIWNIVFSQFNNDGNGNYTELAQKNIDTGAGIERLVSVL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSSFLI 286
           Q    N+D D+F  LI+  E     KY+ N+               R+I DH ++ +F I
Sbjct: 238 QNSPTNFDTDIFLKLIKIIEAFCPFKYDPNSYFTFDPQKVKEQSYFRIIADHFKAITFTI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           ++G+LP    R YV+RR++RRA+   + L      +  ++  +     + Y  L      
Sbjct: 298 SEGVLPGPNERNYVVRRLLRRALIACKKLQLNLAFIEKIIDEIIASYENYYQHLKAKNET 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +++ +  E   F KT+D GLVL +  +    K+  L   + F+L +T+G P++I+++++ 
Sbjct: 358 VKQVVLKEINAFNKTIDLGLVLFEKSV----KNNTLTPQLTFQLNETYGFPVEIIRELVN 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            +GL  ID   F+Q + + RS ++ ++  +          + K                 
Sbjct: 414 QKGLT-IDWTVFDQLMAKHRSISKQNNQTINFEKQNINLVNFK----------------- 455

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                      +       N +++ V  +  +  +  + ++ Q   VVFDQT  YA +GG
Sbjct: 456 ----------TKSTFFYHKNKINAKVIGLFDENYLPVKELNNQSGYVVFDQTVLYATSGG 505

Query: 527 QLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           Q  D G  I     +  ++    V K       H+ +V  G  +    + L+ D   R+ 
Sbjct: 506 QRYDEGSCINHSNNNDQKISFQGVFKGPNKQHFHYFLV--GSFKLNDQVTLSHDETWRKL 563

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NHS  HLLH AL   +   + Q+G+  +      D   ++ +T  EL+ +E+ +  +
Sbjct: 564 AANNHSLEHLLHAALQKEIDPLIKQSGAFKSAQKATIDFNLNRHLTRNELEKVENKIRSL 623

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I Q +       + E +    A A    +Y+    +  + +   G +S  LCGGTHV++T
Sbjct: 624 IKQKISSKEIFTDFEGSQKLNAIAYFEEEYSQHEILRVIRF---GDYSVELCGGTHVANT 680

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSL------------ASFL 749
             I   +I    S+ AG  RIE I+      ++L  +++KL  L            +S  
Sbjct: 681 ASIEDCFITDFYSLGAGRWRIEIISSNETINNYLKAENQKLIQLKSELEKVLSLIDSSIF 740

Query: 750 KVSQGN---------VVGRVEEIWE-------------EYRKLQLIHAKRKLQLNVEDLS 787
           KV             +  ++ ++ +             + +      +++ L L+++   
Sbjct: 741 KVELKELQQRLDKFILPEKITQLRDASDTLLALKNDINQLKTKNYKVSQQALALSIKKQL 800

Query: 788 CHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV-VTED 845
              + +   ++    ++V+ K L   +  +  + Q+   +++    E  + ++I   T  
Sbjct: 801 LSLVDENKSYVIATFNDVEPKLLLQTLHDVFNQNQTKNFLIINQFNESNSFIVIGNKTTT 860

Query: 846 LLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPN---GNKADQ 887
           ++++  N+ +L            GGG   + +    +     K ++
Sbjct: 861 IIEKLRNSFNL-----------KGGGNDKLFRGSFQDNVTPQKLNE 895


>gi|213025001|ref|ZP_03339448.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 514

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/546 (44%), Positives = 337/546 (61%), Gaps = 42/546 (7%)

Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGERY 197
           +  ++IIRI  N       DNFW M +TGPCGPC+EIF+D G+ I GG PGS E +G+RY
Sbjct: 1   IPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRY 60

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           IEIWN+VFMQF +Q       LPK S+DTGMGLER+A VLQ   +NYDIDLF+ LI+A  
Sbjct: 61  IEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVA 120

Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
           +VTG    GN   + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG 
Sbjct: 121 KVTGSTDLGNK--SLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGA 178

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
            E     L+  L   MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L 
Sbjct: 179 KETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKL- 237

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           + + L+G+ AF+LYDT+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G
Sbjct: 238 QGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFG 295

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +     I         A++F GYD L                        ++  V A+  
Sbjct: 296 ADYNAMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFV 327

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H 
Sbjct: 328 DGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQAI-GHL 386

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   L
Sbjct: 387 GKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVL 446

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H++ +  +E++ +ED VN  I +NLP+ T IM+ + A A GA AL G KY++RVR
Sbjct: 447 RFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDAAKAKGAMALFGEKYDERVR 506

Query: 678 VVSVEY 683
           V+S+ +
Sbjct: 507 VLSMGF 512


>gi|116515185|ref|YP_802814.1| hypothetical protein BCc_254 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285419|sp|Q057H8|SYA_BUCCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116257039|gb|ABJ90721.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 881

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 278/890 (31%), Positives = 453/890 (50%), Gaps = 61/890 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+FF++  H++  SSSLIP +D +L+FTN+GM  FK I+   +K    ++
Sbjct: 1   MKTDKIRAMFLQFFKEKNHKIFKSSSLIPKDDNSLLFTNAGMNQFKKIYLKNKKKNQLSI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            T Q C+R GGKH+DL  VG T  HHT FEMLGNFSFG YFKE AI+ AW+ LT  K  +
Sbjct: 61  ATSQYCIRTGGKHDDLKKVGHTPYHHTLFEMLGNFSFGEYFKENAIKYAWEFLTHKKWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L +++++IT Y  D E  K+W  I  +    +I+I          DNFW M + GPCGP 
Sbjct: 121 LSKKKIWITYYYNDNETKKIWLNIIKIKNTHLIKIYDKKNIKYNSDNFWKMGDLGPCGPS 180

Query: 173 SEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +EIF+ Q +            E  +  +EIWNLVFM+F Q  K++   LP  SIDTGMGL
Sbjct: 181 TEIFYYQKKNRKEKKSIKSYKELEKYCLEIWNLVFMEFNQITKKKIIKLPIPSIDTGMGL 240

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ +LQ   + +  + F  LI+A ++   +K +  N V+ ++I DH+R+S+ LIA+ I
Sbjct: 241 ERISVILQNVKSIFHTNNFIQLIEAIKKKIKIKIKKKNNVSLKIISDHIRTSTCLIAENI 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA-YP-ELIQAKLLIE 348
           LP NEGR YVLR+I+RRA+C+   +G  +P    L   +   M    Y   + +    I+
Sbjct: 301 LPGNEGRNYVLRKIIRRALCHGYFIGLQKPFFYKLSELIIYNMKKMNYDFHIQEKIHKIK 360

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+++F   L+ GL  L  ++ ++ K++I      F LYDT+GLP+ I Q     +
Sbjct: 361 KILFYEEKQFYYILENGLQKLKKIIKNIKKNKICE-QKIFTLYDTYGLPIQITQKFCKKK 419

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            ++  +I   N  +       + +     +   +K  FS       + F GY +      
Sbjct: 420 NIS-FNINKLNLII-------KNNKKKQKNKEKKKKNFSFITFKKKSIFDGYHIYEK--- 468

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                                S +  I+ + + V +    Q   ++ D TPF++++ GQ+
Sbjct: 469 --------------------KSKIIQIIYKNKNVLKLSKSQLGIIILDITPFFSKSSGQI 508

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD+G  + D     +    KK +   +H   ++ G +  +  +   I+ + R+ +  NHS
Sbjct: 509 GDSGKILNDKGIFIVQKT-KKFDNYILHIGYIKHGCINIKDIVHAKINKKKRKTIQSNHS 567

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATHLL+ AL  I    + Q GS I    LRFD   +K +T  ++  +E+ +N  I +N+P
Sbjct: 568 ATHLLNAALCKIFSEKIIQKGSFINDKYLRFDFFCNKTLTEEKINYLENIINKKIQKNIP 627

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +   I + + A       LL  KY   VR++ ++       S  LC GTH  +TG+I   
Sbjct: 628 INFVITSFKKAKKKKIKFLLEKKYKKTVRIIYIKN-----FSIELCNGTHHDNTGKIGCF 682

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-------QGNVVGRVE 761
            I++ ++I   I+RI AITG     +   +D+  K L +    +         N+V + +
Sbjct: 683 KIIAYNNIGNEIKRITAITGMEVIQYFNDKDKINKKLENLFSTNIHNIYLIAKNIVNKNK 742

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           ++ EE  KL+  +     ++ +             +    S ++ K L+ + D L++K++
Sbjct: 743 KLLEENIKLKNKNIIEISKILISKAYLSNKK--FLIIEKTSYIEYKLLRKLSDILKEKLK 800

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           S I++L+     KK + LI +T++L    N  ++  +   V+ G GGG +
Sbjct: 801 SLIVILI-NDNNKKINFLISITKNLKHIINLNNIKNIIFSVIPGTGGGKK 849


>gi|60594334|pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With Atp And Magnesium
 gi|60594335|pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With Atp And Magnesium
 gi|60594336|pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With L-Alanine
 gi|60594337|pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With L-Alanine
 gi|60594338|pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
           Trna Synthetase In Complex Wtih Glycine
 gi|60594346|pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
           Synthetase In Complex With L-Serine
          Length = 465

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 299/466 (64%), Gaps = 14/466 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 184 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY       V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF K
Sbjct: 296 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 355

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 356 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              LEEQR RAR H   + +   + ++  LKE    + F+G   L 
Sbjct: 415 QCELEEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVGAAALE 459


>gi|242556759|pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
           Synthetase In Complex With L-Serine: Re-Refined
          Length = 464

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/466 (45%), Positives = 299/466 (64%), Gaps = 14/466 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+GMVPFKN+F G EK  Y+  T
Sbjct: 3   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 63  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW M + GPCGP SEI+ D+GE 
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 182

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVFMQ+ +        LP  +IDTGMGLER+A+VLQ K +
Sbjct: 183 YEG--------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 234

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY       V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 235 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 294

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRAM +   LG   P +   +  +   M   YPEL  ++  ++  ++ E++RF K
Sbjct: 295 IRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIK 354

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G+  +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 355 TLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              LEEQR RAR H   + +   + ++  LKE    + F+G   L 
Sbjct: 414 QCELEEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVGAAALE 458


>gi|195127375|ref|XP_002008144.1| GI13332 [Drosophila mojavensis]
 gi|193919753|gb|EDW18620.1| GI13332 [Drosophila mojavensis]
          Length = 1009

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 234/964 (24%), Positives = 405/964 (42%), Gaps = 110/964 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TF+++F   + H+ + SS ++P  DPT+ F N+GM  FK+IF G     Y+
Sbjct: 11  VLTAREIRKTFIDYFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSIFLGTAAAPYK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 131 IDPSRLYVTYFAGDKLLGIPADMECFEIWRSL-GFPAARILPFGCKDNFWEMGTTGPCGP 189

Query: 172 CSEIFFDQGECIPG-----GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           C+EI  D                 +       E+WNLVF+Q+ +        LP   +DT
Sbjct: 190 CTEIHIDHRPGDGPASIEQRAKLVNAGRPDLTELWNLVFIQYNRNADGSITQLPAQHVDT 249

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIV 276
           GMG ER+A +LQ K++NYD DLF  L  A   ++       +            ++R++ 
Sbjct: 250 GMGFERLAALLQNKSSNYDTDLFTPLFDAIHSLSKAPVYAGSFPDDQNAALLDTSYRILA 309

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G A
Sbjct: 310 DHARMVTACLADGMLPDQNQK---LRRVLRKALSISEQVFAHDKLLSQLVPIVVETLGEA 366

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------------------ 378
           YPE+   +  + E +  E E +    +        VL+   K                  
Sbjct: 367 YPEMSTKQQAVIELIAHEQEVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYRE 426

Query: 379 ---------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
                    +  + G+  +KL DT+GL  +    +     +   D+  +   L   + + 
Sbjct: 427 FQVQRSNFPNNTIPGEFLYKLTDTYGLTEESFLKLAELENM-NCDLDRYRAELALAKLKT 485

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +      G         +L+++    Q      L  +    +      ++        + 
Sbjct: 486 KEPQNNRG-----DFDLALQQRIADAQAQLTKRLASTDNSYKYIYSYDEENETYAIPMLK 540

Query: 490 SIVKAIVQQGEIVEEAVSG---QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-------I 539
           S V  I+Q    V           + +V   + FY E+GGQ  D G  +           
Sbjct: 541 SCVLGILQDDSEVSRVRPEASLNTLSIVTAASNFYFESGGQQSDLGMLLVHNKQKPEEPH 600

Query: 540 RLQITDVQKKAEGIFVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +L++  V K      VH   +        L     + L +D ++R+  + +H+ATHLL+ 
Sbjct: 601 QLEVVGV-KHLNECVVHVCRLTTPSDDFDLAVGDEVQLEVDAKHRQLNTCHHTATHLLNA 659

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
           A+ ++      Q  S ++ +  + ++    K IT A+++ IED +N  I    PV    +
Sbjct: 660 AIRSLFNKVTYQVSSAVSSEQCKLELGLLGKRITKADVQHIEDLINRAICSATPVQVHQL 719

Query: 655 NREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +  D +       + G  Y ++  R+++V+  +  + S  LC GTHV++T E+    IV+
Sbjct: 720 SAADVLQQNDITMVPGEVYPEQGLRLINVQCPELNLSSKELCCGTHVTNTKEMSCFCIVN 779

Query: 713 ESSIRAGIRRIEAITGQRARSHLMG---------------QDEKLKSLASF--------- 748
                       A+ GQ A + L                 Q +KL +             
Sbjct: 780 LKQTNRARYAFTAVAGQAAENVLKTAALLRHRVDVLENQFQTDKLTNATETELQTIRQNM 839

Query: 749 ----LKVS---QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
               +K+    + + + R+ ++    ++      K  +++ + ++   K  D +      
Sbjct: 840 LHSDIKLPYAFKMDTLDRINQMLRRLKETSRTTLKEFVEVEMRNVLLEKPLDTHPYILHF 899

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
               +   +  +    K      I++V +      +   V    +  +FNA    +  A+
Sbjct: 900 ISSSALVEEIPLQRATKLCTDRPILVVSMCDNIVKARCCVPQNCISKQFNASLWLQSFAE 959

Query: 862 VLGG 865
              G
Sbjct: 960 TFNG 963


>gi|255520943|ref|ZP_05388180.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
          Length = 523

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/552 (39%), Positives = 314/552 (56%), Gaps = 43/552 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FF++ GH + PS+ L+P NDPT+++ NSG+   K  F G   P    + 
Sbjct: 5   SSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFKE AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPKWIGF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D  +LY+TVY EDEEA  LW++  GLS D I+ I   DNFW +   GP GP SEIF+D+G
Sbjct: 121 DPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIGI-GPSGPDSEIFYDRG 177

Query: 181 ECIPGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                           E ERY+EIWNLVF QF          LPK +IDTGMGLERM ++
Sbjct: 178 PAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSI 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +Q+   N++ DLF  +I+  EQ+ G+KY     N V  +VI DH+R+ +F I DG LP+N
Sbjct: 238 IQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAFAIGDGALPSN 297

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
           EGRGY+LRR++RRA+ YA++L   EP M  L+P +   M S YPE+      I++ +R+E
Sbjct: 298 EGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTE 357

Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +ERF +TL+ GL +L+ +L    +  ++I+ G   FKLYDT G P+++ ++     GL  
Sbjct: 358 EERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTEEYAEDHGLK- 416

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
           +D   F   ++EQR RAR+    + S   +     L      + F+GY+           
Sbjct: 417 VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH------- 467

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
                            S +  ++Q   +VEE  +G + +V+F +TPFYAE+GGQ+ D G
Sbjct: 468 ----------------VSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVADKG 511

Query: 533 CAIGDGIRLQIT 544
               +     + 
Sbjct: 512 TIESETGLAYVE 523


>gi|240102368|ref|YP_002958676.1| alanyl-tRNA synthetase [Thermococcus gammatolerans EJ3]
 gi|239909921|gb|ACS32812.1| Alanyl-tRNA synthetase (alaS) [Thermococcus gammatolerans EJ3]
          Length = 913

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 216/965 (22%), Positives = 389/965 (40%), Gaps = 187/965 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+     G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +    +                             T  +N W+    G  GP  E+ 
Sbjct: 174 ELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPKMSI 224
           +                  R +E+  LVFMQ+++                    +    +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDYYVPMETKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------- 271
           DTG GLER+  +       YD  +  ++I+  +++ G++     I+              
Sbjct: 245 DTGYGLERLVWMSHGTPTAYDA-VLGYVIEPLKKMAGVEKIDERILMENSRLAGMFDIED 303

Query: 272 -------------------------------HRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLRYLREQVAKRVGITVEELEKAVRPYELIYAIADHTKALTFMLADGVIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   P +  ++     E+   +PE  + + +I + +  E++R+ +
Sbjct: 364 ARLLIRKSIRHLRELGLEVP-LAEIVAMHIKELSPTFPEFKEMEDVILDIINVEEKRYHE 422

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+      +F
Sbjct: 423 TLKRGSDLVRREIAKLKKKGINELPLEKLILFYESHGLTPEIVAEVAQKEGIKVEIPDNF 482

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +Q  +    ++         + F L +    T+ + Y+     +F  E  KV+  
Sbjct: 483 YTLVAKQAEKTEKKTVAEYV-----VDFELVKDLPETRTLYYEDPFMKEFDAEVVKVIDD 537

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                                             VV +QT FY E GGQ  DTG    DG
Sbjct: 538 ---------------------------------WVVLNQTAFYPEGGGQPYDTGTLEVDG 564

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++T+VQK   G  + H + +  + +    +   +D+  R Q   +H+ TH+L  AL 
Sbjct: 565 EEVRVTNVQKV--GKVILHRVDKPELFKKGAKVHGKLDWDRRIQHMRHHTGTHVLMGALV 622

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + R +
Sbjct: 623 RVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLPRTE 682

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +RVV +E           CGGTH+ +TG I  + I+    I
Sbjct: 683 AEMKYGFRLYQGGVVPGRTIRVVKIE-----DWDVQACGGTHLPNTGLIGPIKILRTERI 737

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RI    G+ A   +   +  LK  A   +V    V    E  + E+++ +    K
Sbjct: 738 QDGVERIIFAAGEAAIDWMQETERLLKKTAEIFRVPPEKVPETAERFFNEWKEARKEVEK 797

Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L        +    K+ D+ F+  ++      +L+   + L+K  +  +++L+   
Sbjct: 798 LRKELAKLLVYELENKVEKVGDIEFIGAVVEG-TMNDLREAANRLRK--EKRVVVLISRE 854

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARL---SAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                  ++ V + L     A +LA++    A   GGG    R  +AQ    N  KA++A
Sbjct: 855 G----HFVVAVGDGL--DLKAGELAKIITSVAGGGGGG----RKELAQGRIKNPLKAEEA 904

Query: 889 IAGVA 893
           I  V 
Sbjct: 905 IEEVK 909


>gi|195376313|ref|XP_002046941.1| GJ13159 [Drosophila virilis]
 gi|194154099|gb|EDW69283.1| GJ13159 [Drosophila virilis]
          Length = 1009

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 234/964 (24%), Positives = 402/964 (41%), Gaps = 110/964 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR  F+++F   + H+ + SS ++P  DPT+ F N+GM  FK +F G     Y+
Sbjct: 11  VLTAREIRKIFIDYFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKTVFLGTAAAPYK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A++++     DNFW M  TGPCGP
Sbjct: 131 IDPSRLYVTYFAGDKLLGIPADLECFEIWRSL-GFPAERVLPFGCKDNFWEMGTTGPCGP 189

Query: 172 CSEIFFDQGECIPGG-----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           C+EI  D                 +       E+WNLVF+Q+ +        LP   +DT
Sbjct: 190 CTEIHIDHRPGSGPNSVEQRAKLVNAGRADLTELWNLVFIQYNRNADGSITQLPARHVDT 249

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIV 276
           GMG ER+A +LQ K++NYD DLF  L      ++     G +            ++R++ 
Sbjct: 250 GMGFERLAALLQNKSSNYDTDLFTPLFDGIHSLSKAPVYGGSFPDAQNSALLDTSYRILA 309

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G A
Sbjct: 310 DHARMVTACLADGMLPDQNQK---LRRVLRKALSISEQVFGHEKLLSQLVPIVVETLGEA 366

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------------------ 378
           YPE+   +  + E +  E E +    +        VL+   K                  
Sbjct: 367 YPEMSTKQQAVIELILHEQEVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYRE 426

Query: 379 ---------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
                    +  + GD  +KL DT+GL  +    +     +   D+  +   L   + + 
Sbjct: 427 FQVQRSNFPNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLDRYRAELALAKLKT 485

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +      G         +L+++    Q      L  +    +      +         V+
Sbjct: 486 KEPQRSSG-----DYDLALQQRIADAQAQLTKRLAPTDNSHKYIYSYDEANETYSIPTVT 540

Query: 490 SIVKAIVQQGEIVEEAVSGQ---KVEVVFDQTPFYAEAGGQLGDTGCAIG-------DGI 539
           S V  ++Q    V      +    + +V   + FY E+GGQ  D G  +        +  
Sbjct: 541 SRVLGMLQNDVEVSRTRLEEPLNTLSIVTAASNFYYESGGQQSDLGKLLVRNTHKPEEPH 600

Query: 540 RLQITDVQKKAEGIFVHHAI----VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           +L++  V K      VH        +   L     + L +D   R+  + +H+ATHLL+ 
Sbjct: 601 QLEVVGV-KHLNDCVVHVCRPITSADDFELAVGDEVQLEVDAMQRQLNTCHHTATHLLNA 659

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
           A+ ++      Q  S ++ +  + ++    K I  A+++ IED +N  I    PV  + +
Sbjct: 660 AIRSLFNKVTYQVSSAVSGEQCKLELGLLGKRIQKADVQHIEDLINRAICSATPVQVQEL 719

Query: 655 NREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +  D +       + G  Y ++  R++ V+  +  + S  LC GTHV++T E+    IV+
Sbjct: 720 SAADVLQQNDITMVPGEVYPEQGLRLIKVQCPELSLSSKELCCGTHVTNTKELSCFCIVN 779

Query: 713 ESSIRAGIRRIEAITGQRARSHLMG---QDEKLKSLASFLKVS----------------- 752
                       A+ GQ A + L        ++  L    K                   
Sbjct: 780 LKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDMLEKQFKTDKLTNATETELQTIRHNM 839

Query: 753 -----------QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
                      + + + R+ EI  + ++      K  +++ + ++   K  D +      
Sbjct: 840 LHSDIKLPYAFKMDTLDRINEILRKLKETSRTTLKEFVEVEMRNVLLEKPLDTHPYILHF 899

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
               +   +  +    K      I++V +      +   V    + ++FNA    +  AK
Sbjct: 900 ISSSALVEEIPLQRATKLCTDRPILVVSMCDNIVKARCCVPQNCISEQFNATLWLQSFAK 959

Query: 862 VLGG 865
             GG
Sbjct: 960 TFGG 963


>gi|198467159|ref|XP_001354280.2| GA18318 [Drosophila pseudoobscura pseudoobscura]
 gi|198149531|gb|EAL31333.2| GA18318 [Drosophila pseudoobscura pseudoobscura]
          Length = 1013

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 247/1017 (24%), Positives = 429/1017 (42%), Gaps = 139/1017 (13%)

Query: 1    MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
            +     IR TF++FF   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11   VLTAREIRKTFIDFFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60   AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             V   QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK+ A  +A +LL   ++
Sbjct: 71   RVVNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKQEACAMALELLRGPYN 130

Query: 120  LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 131  IDPGRLYVTYFAGDKLLGIPADMECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGP 189

Query: 172  CSEIFFDQGEC---IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            C+EI  D       +       +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 190  CTEIHIDHRPELGSVADRGKLVNAGRSDLTELWNLVFIQYNRNPDGSISQLPAHHVDTGM 249

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
            G ER+A +LQ K++NYD DLF  L    +Q++     G +            ++R++ DH
Sbjct: 250  GFERLAAILQSKSSNYDTDLFSPLFDGIQQLSKAPVYGGSFPETSNAALLDTSYRILADH 309

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
             R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYP
Sbjct: 310  ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHEKLLSQLVPIVVETLGEAYP 366

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
            E+   +  + + +  E + +    +        VL+                        
Sbjct: 367  EMSAKQEAVIDLINHEHDVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREFQ 426

Query: 379  -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                   +  + GD  +KL DT+GL  +    +     +   D+  +   +   + +++ 
Sbjct: 427  VQRCKFPNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLDRYRAEVSLAKIKSKE 485

Query: 432  HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR-GSKFMKEDRKVLCQKPPIDLTNGVSS 490
                 G         +L+++    Q      LR      K       +     +    S 
Sbjct: 486  SQREDGGICD----VALEQRIAEAQATLTKRLRPTDNSHKYVYSFDSENESYKIPTLRSR 541

Query: 491  IVKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----- 540
            +V  ++   E+     S        + +V   + FY E+GGQ  D G  +          
Sbjct: 542  VVGMLLNDAEVSRTQGSRLQDTSDTLSIVTAASNFYYESGGQQSDAGQILVSNAHKPEQP 601

Query: 541  ---LQITDVQKKAEGIFVHHAIV-----ERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               L +  V K      VH   +     +   +     + L +D   R+  + +H+ATHL
Sbjct: 602  HHLLNVIRV-KHLNDCVVHVCRLAAPADDHFEVAIGDEVELQVDSGTRQLNTCHHTATHL 660

Query: 593  LHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVT 651
            L+ A+ ++      Q  S +T +  + ++    K I  A+++ IED +N II     V  
Sbjct: 661  LNAAIRSLFNKVTYQVSSSVTSEQCKLELGLLGKRIQKADVQLIEDLINRIICSATTVQV 720

Query: 652  RIMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             +++  D +       + G  Y ++  R++SV+  D  + S  LC GTHV++T E+    
Sbjct: 721  ELVSAADVLQENDITMVPGEVYPEQGLRLISVQCPDMQLSSKELCCGTHVTNTSELSCFC 780

Query: 710  IVSESSIRAGIRRIEAITGQRARSHLMG---------------QDEKLKSLASF------ 748
            IV+            A+ GQ A + L                 Q +KL +          
Sbjct: 781  IVNLKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDMLEQQFQTDKLTNATEIELQTIR 840

Query: 749  -------LKVS---QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FM 797
                   +K+    + + + R+ ++ +  ++      K  +++ + +L   K  D + F+
Sbjct: 841  HNMLHTDIKLPYAFKMDTLERIHDMLKRIKETSRTTLKEFVEVEMRNLLQEKPVDTHPFI 900

Query: 798  SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856
             H I+   S  ++ +      K+ S   +LV    +        V ++ +++ F+A    
Sbjct: 901  LHYIT--SSALVEEIPLQRATKLCSDRPILVVSMCDSVVKARCCVPQNSVNQEFDASSWL 958

Query: 857  RLSAKVLGGGGGGGRPHMAQSGGPNG----------------NKADQAIAGVASFLK 897
            +  A   GG        +A   G N                  + +QA+A    + K
Sbjct: 959  QSFAATFGG-------QVAAPKGQNPKIVCNMKGRKVSNLFEEQLEQALAKAHQYAK 1008


>gi|254173402|ref|ZP_04880075.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214032811|gb|EEB73640.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 913

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 216/968 (22%), Positives = 390/968 (40%), Gaps = 187/968 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+     G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +    +                             T  +N W+    G  GP  E+ 
Sbjct: 174 ELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPKMSI 224
           +                  R +E+  LVFMQ+++                    +    +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDYYVPMETKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------- 271
           DTG GLER+  +       YD  +  ++I+  +++ G++     I+              
Sbjct: 245 DTGYGLERLVWMSHGTPTAYDA-VLGYVIEPLKKMAGVEKIDERILMENSRLAGMFDIED 303

Query: 272 -------------------------------HRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLRYLREQVAKRVGISVEELEKAIRPYELIYAIADHTKALTFMLADGVIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   P +  ++     E+   +PE  + + +I + +  E++R+ +
Sbjct: 364 ARLLIRKSIRHLRELGLEVP-LAEIVAMHIKELSPTFPEFKEMEDVILDIINVEEKRYHE 422

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+      +F
Sbjct: 423 TLKRGSDLVRREIAKLKKRGINELPLEKLILFYESHGLTPEIVAEVAQKEGIKVEIPDNF 482

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +Q  +    + G        + F L +    T+ + Y+     +F  E  KV+  
Sbjct: 483 YTLVAKQAEKTEKKTAGEYV-----VDFELVKDLPDTRTLYYEDPFMKEFDAEVVKVIDD 537

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                                             VV +QT FY E GGQ  DTG    +G
Sbjct: 538 ---------------------------------WVVLNQTAFYPEGGGQPYDTGTLEVNG 564

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++T+VQK   G  + H +    + +  + +   +D+  R Q   +H+ TH+L  AL 
Sbjct: 565 EEVKVTNVQKV--GKVILHRVERPELFKPGVKVHGKLDWDRRIQHMRHHTGTHVLMGALV 622

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + R +
Sbjct: 623 RVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLPRTE 682

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +RV+ +E           CGGTH+ +TG I  + I+    I
Sbjct: 683 AEMKYGFRLYQGGVVPGRVIRVLKIE-----DWDVQACGGTHLPNTGLIGPIKILRTERI 737

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RI    G+ A   +   +  LK  A   +V    V    E  + E+++ +    K
Sbjct: 738 QDGVERIIFAAGEAAIDWMQETERLLKKTAEIFRVPPEKVPETAERFFNEWKEARKEVEK 797

Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L        +    K+ D+ F+  ++      +L+   + L+K  +  +++L+   
Sbjct: 798 LRKELAKLLVYELENRVEKVGDIEFIGAVVEG-TMDDLREAANRLRK--EKRVVVLISRE 854

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARL---SAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                  ++ V + L     A +LA++    A   GGG    R  +AQ    N  KA++A
Sbjct: 855 G----HFVVAVGDGL--DLKAGELAKIITSVAGGGGGG----RKELAQGRIKNPLKAEEA 904

Query: 889 IAGVASFL 896
           I  V   L
Sbjct: 905 IEEVKKRL 912


>gi|169836863|ref|ZP_02870051.1| Alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 568

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 231/602 (38%), Positives = 347/602 (57%), Gaps = 48/602 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR +F++FF+   H+   S+SLIP +D +L+ T +GMVPFK  F G+++  +  +
Sbjct: 1   MTGNEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFPRI 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           TT QKC+R     NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK   LD
Sbjct: 60  TTYQKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLD 115

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD--- 178
             RLY++VY  D+EA+++W K  G+  D+I+R+   DN+W+    G CGPCSEI++D   
Sbjct: 116 PERLYVSVYKTDDEAYEIWNKEIGVPEDRIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQN 175

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
            G+          +EG+R++EIWNLVF ++ +        LP+ +IDTG GLER+A+V+Q
Sbjct: 176 MGKNNEEINCKPGDEGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQ 235

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +K NN++ D+F  +I+  E+V  +K E    +  +VI DH+R+S FLIADG+LP+NEGRG
Sbjct: 236 KKDNNFETDIFMPIIKGIEKVLDIKKE-EFEITVKVIADHIRASVFLIADGVLPSNEGRG 294

Query: 299 YVLRRIMRRAMCYA----RLLGYTEP--LMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           Y+LR+I+RRA        + L  T+    +  L+P +   M  AYPEL++ +  IE+ LR
Sbjct: 295 YILRKIIRRAFGAGIVAKQKLEITKDDLFLYKLVPYVVENMKEAYPELVEKQEYIEKVLR 354

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410
            E ERF  TL  G+ +L   +  + K+ I  L+ D +FKLYDT GLP ++ + IL  +G 
Sbjct: 355 LEQERFALTLKNGIEMLTEEIEKMDKEGIKKLSADASFKLYDTFGLPFELTELILENQGY 414

Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
             +    FNQ LEEQ  R++   + +     +       E++G T+F GY+         
Sbjct: 415 E-VSEEEFNQKLEEQVKRSKNSRVTVSDMIKDDFIDKFFEEHGKTEFTGYEKFED----- 468

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530
                                +  I +      E +SG   EV+FD+TPFYAE+GGQ+ D
Sbjct: 469 ------------------EGKILHIAK-----SEGISG--YEVIFDRTPFYAESGGQVAD 503

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
           TG         ++ +V KK +       I++         + + ID   R+ +  NH+AT
Sbjct: 504 TGIITSGEFEGKVVNVVKKHDVFIHQVEILKGIAPAVGAEVKMKIDADRRKDIQRNHTAT 563

Query: 591 HL 592
           H+
Sbjct: 564 HI 565


>gi|194750281|ref|XP_001957556.1| GF23971 [Drosophila ananassae]
 gi|190624838|gb|EDV40362.1| GF23971 [Drosophila ananassae]
          Length = 1011

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 239/968 (24%), Positives = 408/968 (42%), Gaps = 114/968 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11  VLTAREIRKTFLDHFTVSHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGSDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADSECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGP 189

Query: 172 CSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 190 CTEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+  VLQ K +NYD DLF  +    +QV      G +            N+R++ DH
Sbjct: 250 GFERLTAVLQNKHSNYDTDLFTPIFDGIQQVAKAPVYGGSFPDGANEALLDTNYRILADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYP
Sbjct: 310 ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAKENLLTQLIPIVVETLGEAYP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--------------------- 377
           E+   +  + + ++ E E +    +        VL+                        
Sbjct: 367 EMSAKQQAVVDLIQHEQEVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREFQ 426

Query: 378 ------KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + GD  +KL DT+GL  +    +     +   D+  +   +   + +A++
Sbjct: 427 VQRSKFNNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLERYRAEVSLAKIKAKS 485

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                G+   + +    +++    Q      L  +    +      ++        + + 
Sbjct: 486 IQREEGASLYDLV---TEQRIAEAQAKMTKRLTATDNSHKYSYTFDKESSSYEIPPLRTR 542

Query: 492 VKAIVQQGEIVE-------EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---- 540
           V  ++     V        +  +   + +V   + FY E+GGQ  D G  +         
Sbjct: 543 VMGLLLNDAEVSRTQGSRLQDPTTDTISLVTAASNFYYESGGQQSDGGKILVQNTHQPDQ 602

Query: 541 ---LQITDVQKKAEGIFVHHAI----VERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              L +  V K      VH       V+   L     + L +D   R+  + +H+ATHLL
Sbjct: 603 PHLLDVISV-KNLNDCVVHVCRLSSPVDAFELAIGDDVELVVDPTQRQLNTCHHTATHLL 661

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + A+ T+      Q  S +T D  + +V    K I  ++++ IED +N +I    PV   
Sbjct: 662 NAAIRTLFDKVTYQVSSSVTSDQCKLEVGLLGKRIKKSDVQLIEDLINRVICAATPVKVE 721

Query: 653 IMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            +   + +       + G  Y ++  R+V V+  +  ++S  LC GTH ++T E+    I
Sbjct: 722 RLCAAEVLQQNDITMVPGEVYPEQGLRLVHVQSPELHLNSKELCCGTHATNTSELSCFCI 781

Query: 711 VSESSIRAGIRRIEAITGQRARSHL-----------------------MGQDEKLKSLAS 747
           V+            A+ GQ A + L                          + +L+++  
Sbjct: 782 VNLKQTNRARFSFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKITNATEAELQTIRH 841

Query: 748 -FLKVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMS 798
             L            + + R+ E+ +  ++      K  +++ + +L   K  + + F+ 
Sbjct: 842 NMLHTDIKLPYAFKMDTLERISEMLKRIKESSRTTLKEFVEVEMRNLLQEKPHETHPFIL 901

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLAR 857
           H I+   S  ++ +      K+     +LV    +        V  +   D+FNA    +
Sbjct: 902 HYIT--SSALVEEIPLQRATKLCQDRPILVISMCDSVVKARCCVPPNCATDKFNASAWLQ 959

Query: 858 LSAKVLGG 865
             A   GG
Sbjct: 960 SFADTFGG 967


>gi|73668887|ref|YP_304902.1| alanyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|121697109|sp|Q46CS0|SYA_METBF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|72396049|gb|AAZ70322.1| alanyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 923

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 233/968 (24%), Positives = 384/968 (39%), Gaps = 178/968 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S +R  +L FF++ GH  +    ++      L  T + +  F+   T GQ  P    +
Sbjct: 59  DISQMREYYLSFFEEKGHTRINRYPVVARWRDDLYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE A++L  +LLT 
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTTFEMMAHHAFNKRDHEIYWKEHAMELCDELLTS 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD   L ++                             +  W+    G  GPC E+ 
Sbjct: 175 -LKLDP--LAVSY---------------------------KEEPWAGG--GNAGPCVEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-------ERFILPKMSIDTGMG 229
                                +E+  LVFM  +   K            +    +DTG G
Sbjct: 203 V------------------HGLELATLVFMDLKADKKGDVLIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------------------- 268
           LER     +     YD  LF  ++     + G+++E +N                     
Sbjct: 245 LERFVWASKGSPTIYDA-LFPGIVNELMGLAGLEHELDNSEYANILAQNARLAGFMDVSE 303

Query: 269 ----------------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                       +     I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 QSNLLELRKKVASSIGMTVDKLSAIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +     L    P +  ++      M   YPE  +   +I++ L SE+E+F  
Sbjct: 364 ARLVIRRTLRMMDDLDIRIP-LSEIMDMHIKNM-PEYPEFRENFPVIQDILVSEEEKFRN 421

Query: 361 TLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           T+++G  ++    SH  K  E +      +LYD+HG+P ++ +++    G+      +F 
Sbjct: 422 TMEKGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVASEIGVGVEFPDNFY 481

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + E  ++A      +        +    +    T+   YD     +F           
Sbjct: 482 SIIGELHNKAEEKEEEV------VPFADRLKHLPKTKRSFYDEPTRLEF----------- 524

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V  I                 +V D T FYAE GGQ  D G       
Sbjct: 525 ---------EAVVLDIFDNN-------------IVLDNTFFYAEGGGQPADMGTIATAYA 562

Query: 540 RLQITDVQKKAEGIFVHHAIVERGIL--RTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             ++ DVQ   +G+ VH      G L  R    +   +D + R  L+ +H+ATH+++ A 
Sbjct: 563 VYKVVDVQ-VYDGVIVHTIENPDGNLDIRKGDIVNGKVDEKRRMTLARHHTATHIVNDAA 621

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG+H+ Q G+    D  R D++H K I+  ELK IE   N ++ +N  VVT  M+R 
Sbjct: 622 RKVLGTHIWQAGAQKFEDHSRLDLSHYKHISPDELKQIELLANRMVMENKRVVTEWMSRT 681

Query: 658 DAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +A       L   G    +++RVV V            C GTH  STG +  + I+    
Sbjct: 682 EAEQEYGFGLYQGGVPPGEKIRVVKVG------DDVEACAGTHCVSTGVVGPIKILRTER 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I+ G+ R+E   G  A   +   D  L   A  L V    +   VE  + E++ L+  + 
Sbjct: 736 IQDGVERVEFAAGVAAVRAMQKIDSLLSDSAKTLSVPPEQLPASVERFFGEWKDLKKENE 795

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           K K ++    +        ++A +  ++  I E DS EL+     L K     ++ L+  
Sbjct: 796 KLKEEIARARVYRLLGGASEVAGLKVIAEFIPEADSLELQKTATELLK--HEDVVTLLAS 853

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E    V     + L    NA  L R  +K++ GG GGG+P +A  GG + +K   A+A
Sbjct: 854 DAEGVKLVASAGQKALSCGINAGSLVREMSKLVSGG-GGGKPALAMGGGTDPSKIQDALA 912

Query: 891 GVASFLKK 898
                +K+
Sbjct: 913 RGLELVKE 920


>gi|326391983|ref|ZP_08213484.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991968|gb|EGD50459.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 494

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 218/519 (42%), Positives = 318/519 (61%), Gaps = 37/519 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ IR  FL FF+  GH  LPS SLIP ND +L+  NSGM P K  FTG+E P  + VTT
Sbjct: 6   MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            Q+C+R      D++ VG+T RH TFFEMLGNFSFG YFK+ AI  AW+ +T+   L   
Sbjct: 66  CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RL++++Y+ED+EAF++W KI GL  ++I+R+   DNFW +  TGPCGP SEI+FD+GE  
Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180

Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
             G P  G   + +R+IE WNLVF QF +  +     LP  +IDTGMGLER+AT++Q   
Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVD 240

Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
           + +D+D+ + +     ++  ++Y  +    V+ RVI DH+R  +F+I+DGILP+NEGRGY
Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLRR++RRA  + +LLG  +  +  ++ ++    G AYPE+I+ K  I+  ++ E+ERF 
Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFK 360

Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
           +T+D+GL +L   +S L      +L G  AFKLYDT+G PLD+ ++IL   G+  +D   
Sbjct: 361 ETIDQGLTILQDYISELKVQGKTVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEEG 419

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           + + LE+QR RAR+      S   + I+ +L +    T+F+GYD                
Sbjct: 420 YTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDTYESD----------- 466

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                       S V AIV+  E+VEEA +G  V ++ D
Sbjct: 467 ------------SKVLAIVKDEELVEEAEAGDDVSIILD 493


>gi|91087359|ref|XP_975627.1| PREDICTED: similar to mitochondrial alanyl-tRNA synthetase
           CG4633-PA [Tribolium castaneum]
          Length = 1044

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/862 (28%), Positives = 393/862 (45%), Gaps = 85/862 (9%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR  FL++F  KN H  + SS ++P  DPT+ F N+GM  FK +F G  +P Y+ V   Q
Sbjct: 79  IRQKFLDYFINKNNHNFIKSSPVVPFCDPTVAFVNAGMNQFKGVFLGTHQPQYKNVANSQ 138

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R GGKHNDL+ VG    HHTFFEMLGN+SFG YFK+ A +LAW LLT+E+ +   RL
Sbjct: 139 KCIRVGGKHNDLNVVGGDGYHHTFFEMLGNWSFGDYFKQEACELAWKLLTEEYKIHPSRL 198

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +        DED E  ++W K  G+S D+I+  T+ DNFW M  TGPCGPC+EI  
Sbjct: 199 YVTYFKGDPVLGIDEDLETKEIW-KTIGVSEDRILPFTSKDNFWEMGPTGPCGPCTEIHI 257

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D            ++      E+WNLVF+Q+ +++ +   +LP+  +DTGMG ER+  VL
Sbjct: 258 DHTTSN-NRAKLVNKGLHDLTELWNLVFIQYNRKSNESVDLLPEKHVDTGMGFERLTAVL 316

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIAD 288
           Q K +NYD D F +L++A +  + +                 ++RV+ DH R  +  +AD
Sbjct: 317 QGKISNYDTDNFTYLLKAIQNCSKIPEYRGTFGEKDWNSLDASYRVLADHARMVTVCLAD 376

Query: 289 GILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
            ++P    +   LRR+MRRA      +      L+  L   +   +G  YPE+ +    I
Sbjct: 377 AMIPEQNQK---LRRVMRRAFLLCENVFNKDSGLLKELSNYVIEHLGCVYPEMERNVKQI 433

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK-----------------------DEILNG 384
            + +  E+E +     +       +  H  K                        + ++ 
Sbjct: 434 HQIIDYEEEVYKSVRKQATEEWVKLAKHQPKLLSLDINENPSLVAGYKEISSTNPKFIDA 493

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
            +AFKLYDT GL  D +  +     L   +    ++ LE  + R++   L  G    E++
Sbjct: 494 QLAFKLYDTFGLDEDSISSLAQILNLP-FNASDLHKQLELAKIRSKEQGLVSGPNVYEQL 552

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
             +   K   +    Y                 +K    + + +  ++  IV+  ++V +
Sbjct: 553 TRAKVPKTDRSTLYNY----------------AKKGEKYVFDDLEVVILKIVKDSKLVRQ 596

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV---E 561
             S     +V D++ FY EAGGQ+ D G         ++T+ Q    G  +H   +   E
Sbjct: 597 IESENFYGLVLDKSSFYTEAGGQISDRGAINFGDCVFEVTEAQ-DCNGYILHKGFLRSGE 655

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G ++  M+  L ID   R +   NH+A HLL+  L  + G+   Q  S +T +    DV
Sbjct: 656 SGRVKVGMTGSLKIDPDFRLKNMRNHTAVHLLNSVLKKVKGA-TCQKSSKVTQNYFNLDV 714

Query: 622 -THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVV 679
              ++ ++  EL+ +E  +  +I   LPV    ++ +  A       + G  Y +    V
Sbjct: 715 GIFAEKLSLDELELVESTITKVIQGRLPVNISELDSQRLANLDEIILIPGEVYPETGIRV 774

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                  G  S   C GTHV +T +I    IVS  S+      I  +TG RA+       
Sbjct: 775 VEVKGGEGFLSREPCCGTHVLNTSDIEDFCIVSMKSLGRSTTSIHGVTGDRAKVAKSNGT 834

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
             L +L +  K    N+        ++   L +     K QLN      + + D N +  
Sbjct: 835 HLLTNLETLEKSVSDNI--------DKPDVLNMAITSFKKQLN------YSVEDENILPV 880

Query: 800 IISEVDSKELKSVMDALQKKIQ 821
           ++ +  +  L  +   ++   +
Sbjct: 881 VVKQQCADILNKISKQIKDSGK 902


>gi|13508158|ref|NP_110107.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129]
 gi|2500958|sp|P75368|SYA_MYCPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1674107|gb|AAB96070.1| alanyl-tRNA synthetase [Mycoplasma pneumoniae M129]
          Length = 900

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 262/949 (27%), Positives = 437/949 (46%), Gaps = 110/949 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R T+L++F   GH  LPS SLIP NDP+L++ NSG+   K+ F+ ++ P  + + 
Sbjct: 4   TTDKVRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSKRLA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+R     ND++NVG T+RH T FEMLGNFS G YFKE AI  A DLL   + LD 
Sbjct: 64  NAQICLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYHLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +R YITVY +DE  F  W K  G+ A +II+   + NFW +   GPCGPC+EI++D+GE 
Sbjct: 120 KRFYITVYQDDELTFNTWLK-HGIPASRIIKCDRDRNFWDLGL-GPCGPCTEIYYDRGER 177

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 G        E +RY+E+WN+VF QF          L + +IDTG G+ER+  +L
Sbjct: 178 FDPHKVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLVAIL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----------NIVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  LI   EQ    KY+ N                R+I DH ++ +F I
Sbjct: 238 QDAPTNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAITFTI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           A+G+LP    R Y++RR++RRA+   + L      +  ++ A+ +  GS Y +L     +
Sbjct: 298 AEGVLPGPNERSYIVRRLLRRALLACKKLDLDLKFIDPMVDAIISVYGSYYQQLQGKNQV 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +++ +  E   F KT++ GL+L +  ++H      L   VAF+LY+T+G P++++++++ 
Sbjct: 358 VQQAIWKEVTAFDKTINLGLMLFEKSIAH----NALQPQVAFQLYETYGFPIEMIKELVD 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            R L  +D  +  Q +E+ R  ++ +S  L      +   + K    A++F+        
Sbjct: 414 KRQL-QVDWKAVEQLMEQHRLISKQNSNTLSFEKQNEHLVNFK---TASEFL-------- 461

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           +     + ++    +Q + V++  + Q   VVFDQT  YA +GG
Sbjct: 462 ---------------YEANEITAKVIGLFDEQYQPVQKLHN-QSGYVVFDQTVLYATSGG 505

Query: 527 QLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           Q  D G  I    +  R+    V K       H      G  +    ++L  D + R+ +
Sbjct: 506 QRYDEGYCINHSQNDQRVSFQGVFKGPNKQHFHF--FLTGSFQLGDKVILVHDGKWRQLV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS  HLLH AL   +   + Q+G+  +      D   S+ +T AEL+ +E  +  II
Sbjct: 564 KNNHSLEHLLHAALQNEIDPLIKQDGAFKSAQKATIDFNFSRALTWAELERVEHRIRQII 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q++       + E +    A A    +Y++   +  + +   G  S  LCGGTHV  TG
Sbjct: 624 QQDIQREEIFTDLEGSQKLNAIAYFEEEYSNHELLRVIRF---GDFSVELCGGTHVEHTG 680

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGNVVG---- 758
            I   +I    +   G  RIE I+      ++L  Q+ KL    + L  +  N+      
Sbjct: 681 LIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGKLSETINSLHNTLNNIANPALN 740

Query: 759 -----------------------RVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCH-- 789
                                  + + +  E +    +L+    K K +   E +     
Sbjct: 741 KQKTALTKQLNHFHLPQVITDLRKCQALLNELKITVNELKTEDFKWKQKQLAEKIKQELL 800

Query: 790 --KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                D  ++    + VD K L  V  A+  + ++ + +L+       + +L+   +D+ 
Sbjct: 801 ELAKQDKAYVLASFAAVDPKLLSQVAQAVLNQHKNKLFVLLNQFNNSPSFMLLG--QDVS 858

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP---NGNKADQAIAGVA 893
                + L +   ++     GGG  +  +       + +K    +  + 
Sbjct: 859 ---KCIQLLKAHFEL----KGGGSNNFFRGSFNESVDVSKLQAILDTLQ 900


>gi|94502213|ref|ZP_01308705.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94425654|gb|EAT10670.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 448

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 226/436 (51%), Positives = 298/436 (68%), Gaps = 14/436 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + IR  FL +F++NGH ++ SSSLIP NDPTLMFTN+GM  FK+ F GQE   Y   
Sbjct: 1   MKTAEIRQAFLRYFEENGHTVVASSSLIPANDPTLMFTNAGMNQFKDTFLGQETRNYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
            + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI+ AW  LT     +
Sbjct: 61  ASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWGFLTGKDWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L   +L +TVY +D+EA+ +W +  GL  DKIIRI  N       DNFW M +TGPCGPC
Sbjct: 121 LPVEKLLVTVYADDQEAYDIWHQEMGLPEDKIIRIGDNKGEKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIFFD G+ I GG PG   E+G+R+IEIWN+VFMQ+ +    +   LPK SIDTGMGLE
Sbjct: 181 SEIFFDHGDHIWGGKPGTPEEDGDRFIEIWNIVFMQYNRYADGKMEPLPKPSIDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R++ ++Q   +NY+IDLF++LI A+ + TG +   N   +  VI DH+RS  FLI+DG++
Sbjct: 241 RISAIMQGVHSNYEIDLFQNLIAAAAKATGTQDLSNK--SLLVIADHIRSCGFLISDGVM 298

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +  LLG T+     L+ AL  EMG AYPEL Q +  +E+ L
Sbjct: 299 PSNEGRGYVLRRIIRRALRHGHLLGATDLFFFKLVAALVDEMGDAYPELKQNQAQLEKIL 358

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F KTLD G+ LL+  ++ L K + + G+  FKLYDT+G P+D+  DI   + L 
Sbjct: 359 KLEEEQFAKTLDNGMKLLEEAIAEL-KGDTIPGETVFKLYDTYGFPVDLTADIAREKDLK 417

Query: 412 GIDIISFNQALEEQRS 427
            +D   F   +EEQ++
Sbjct: 418 -VDEAGFESCMEEQKN 432


>gi|301633563|gb|ADK87117.1| alanine--tRNA ligase [Mycoplasma pneumoniae FH]
          Length = 900

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 262/949 (27%), Positives = 437/949 (46%), Gaps = 110/949 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R T+L++F   GH  LPS SLIP NDP+L++ NSG+   K+ F+ ++ P  + + 
Sbjct: 4   TTDKVRQTWLDYFTAKGHLALPSKSLIPVNDPSLLWINSGVATLKDYFSAKKTPPSKRLA 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q C+R     ND++NVG T+RH T FEMLGNFS G YFKE AI  A DLL   + LD 
Sbjct: 64  NAQICLRV----NDIENVGFTSRHQTLFEMLGNFSIGDYFKEEAIGFANDLLVNHYHLDP 119

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +R YITVY +DE  F  W K  G+ A +II+   + NFW +   GPCGPC+EI++D+GE 
Sbjct: 120 KRFYITVYQDDELTFNTWLK-HGIPASRIIKCDRDRNFWDLGL-GPCGPCTEIYYDRGER 177

Query: 183 IPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                 G        E +RY+E+WN+VF QF          L + +IDTG G+ER+  +L
Sbjct: 178 FDPHKVGEKLFFEDIENDRYVEVWNIVFSQFNNDGNGNYSELAQKNIDTGAGIERLVAIL 237

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----------NIVNHRVIVDHLRSSSFLI 286
           Q+   N+D D+F  LI   EQ    KY+ N                R+I DH ++ +F I
Sbjct: 238 QDAPTNFDTDIFLKLIGIIEQHCKHKYDTNLYFKFDQKLNEAQSAFRIISDHFKAITFTI 297

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           A+G+LP    R Y++RR++RRA+   + L      +  ++ A+ +  GS Y +L     +
Sbjct: 298 AEGVLPGPNERSYIVRRLLRRALLACKKLDLDLKFIDPMVDAIISVYGSYYQQLQGKNQV 357

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +++ +  E   F KT++ GL+L +  ++H      L   VAF+LY+T+G P++++++++ 
Sbjct: 358 VQQAIWKEVTAFDKTINLGLMLFEKSIAH----NALKPQVAFQLYETYGFPIEMIKELVD 413

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            R L  +D  +  Q +E+ R  ++ +S  L      +   + K    A++F+        
Sbjct: 414 KRQL-QVDWKAVEQLMEQHRLISKQNSNTLSFEKQNEHLVNFK---TASEFL-------- 461

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                           +     + ++    +Q + V++  + Q   VVFDQT  YA +GG
Sbjct: 462 ---------------YEANEITAKVIGLFDEQYQPVQKLHN-QSGYVVFDQTVLYATSGG 505

Query: 527 QLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           Q  D G  I    +  R+    V K       H      G  +    ++L  D + R+ +
Sbjct: 506 QRYDEGYCINHSQNDQRVSFQGVFKGPNKQHFHF--FLTGSFQLGDKVILVHDGKWRQLV 563

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             NHS  HLLH AL   +   + Q+G+  +      D   S+ +T AEL+ +E  +  II
Sbjct: 564 KNNHSLEHLLHAALQKEIDPLIKQDGAFKSAQKATIDFNFSRALTWAELERVEHRIRQII 623

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            Q++       + E +    A A    +Y++   +  + +   G  S  LCGGTHV  TG
Sbjct: 624 QQDIQREEIFTDLEGSQKLNAIAYFEEEYSNHELLRVIRF---GDFSVELCGGTHVEHTG 680

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGNVVG---- 758
            I   +I    +   G  RIE I+      ++L  Q+ KL    + L  +  N+      
Sbjct: 681 LIENCFITDYYARGTGRWRIEIISSNETIAAYLNEQNGKLSETINSLHNTLNNIANPALN 740

Query: 759 -----------------------RVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCH-- 789
                                  + + +  E +    +L+    K K +   E +     
Sbjct: 741 KQKTALTKQLNHFHLPQVITDLRKCQALLNELKITVNELKTEDFKWKQKQLAEKIKQELL 800

Query: 790 --KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                D  ++    + VD K L  V  A+  + ++ + +L+       + +L+   +D+ 
Sbjct: 801 ELAKQDKAYVLASFAAVDPKLLSQVAQAVLNQHKNKLFVLLNQFNNSPSFMLLG--QDVS 858

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP---NGNKADQAIAGVA 893
                + L +   ++     GGG  +  +       + +K    +  + 
Sbjct: 859 ---KCIQLLKAHFEL----KGGGSNNFFRGSFNESVDVSKLQAILDTLQ 900


>gi|268531970|ref|XP_002631113.1| C. briggsae CBR-ARS-1 protein [Caenorhabditis briggsae]
          Length = 796

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 234/783 (29%), Positives = 381/783 (48%), Gaps = 60/783 (7%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
            +R +F +FFQ   HE++ S+S+IP  ND +L+FTN+GM  FK++     +P  + V  +
Sbjct: 26  ELRKSFFDFFQSKKHEIVKSASVIPLENDGSLLFTNAGMNQFKSLILSSTEP--RRVANI 83

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQR 123
           QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AWD L +   +D  
Sbjct: 84  QKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACKFAWDYLVEVLGIDSE 143

Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RLY++ +         ED E  ++WK I G+ + +I+     +NFW M   GPCGPC+EI
Sbjct: 144 RLYVSYFGGIEKLGLPEDRECKEIWKNI-GVPSHRILPF-VAENFWEMGAAGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
            +D+     GG   SS     +  +EIWN+VFM   + +  + + L +  IDTGMG ER+
Sbjct: 202 HYDR----IGGRDASSLVNIDDSVVEIWNIVFMSNVRDSSGKIYNLGRNHIDTGMGFERL 257

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEG----NNIVNHRVIVDHLRSSSFLIA 287
            +V+Q K +N+D D+F  ++     +T   +KY G          R++ DH+R+S+  I+
Sbjct: 258 LSVVQNKNSNFDTDVFIPILAKISSLTKKNLKYNGSVSSQEDAVFRLVADHVRASTIAIS 317

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DG +P   G G+++R++MRR+       LG     +  L+P + + + + Y E+ ++   
Sbjct: 318 DGAIPDGTGNGFIVRKMMRRSFLQGNSKLGIDRFGLSDLVPTVISTLKNVYSEVEKSSDK 377

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I    + E+ +F KT+D+   + D V ++  K   ++G  AF L++T+GLPL +  ++  
Sbjct: 378 IINIFKEEETQFWKTVDKAKKMFD-VGANENKSSTISGRKAFNLFETYGLPLSVTIEMAR 436

Query: 407 ARGLAGIDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465
             G   +D   F +  LE Q+   +A    L     +    S KEKY  +   G      
Sbjct: 437 NLG-KEVDEKEFERCQLEAQKLSQKASQFKLPVFAKDFPTHSDKEKYSYSFENGR----- 490

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525
                               + V + +  + Q  E V      +K  VV ++  FYAE G
Sbjct: 491 -----------------YAFSKVPTTILQVYQNQEKVVVLKENEKGFVVLERCQFYAEQG 533

Query: 526 GQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GQ  D G  + DG    ++   +K   G            ++ ++ +   +D + R  + 
Sbjct: 534 GQKSDIGKLLADGRNVFEVESAKKLDNGSVTVLFGRALEPIQKDLRVEQQLDEKRREGVM 593

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----THSKPITSAELKSIEDNV 639
             HSATHLL+ AL    G    Q GS +  + LRFD      +  K   +  LK +E  +
Sbjct: 594 KAHSATHLLNWALQR-SGLGNGQKGSSVDCNRLRFDYSTGDDSLDKSQRTEALKHLEHIL 652

Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           N+ I +           E+A       + +         V  V    G   S   C GTH
Sbjct: 653 NEFIMKGGLTSVIETTLEEAKKIKNLQSDVKEDRIGDSSVRVVTLGSGVNVSVECCSGTH 712

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V     I  + I+S+ S+   +RRI A+TG+ A+      ++  + L+S     +  ++ 
Sbjct: 713 VHDVSIIEDVAIMSDKSMGQNLRRIVAVTGEEAKKCREYAEKVFEELSSTEFKERNKILK 772

Query: 759 RVE 761
           +++
Sbjct: 773 KID 775


>gi|304314036|ref|YP_003849183.1| alanyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587495|gb|ADL57870.1| alanyl-tRNA synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 898

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/953 (24%), Positives = 391/953 (41%), Gaps = 171/953 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  I+  F+EFF + GHE +    ++       +    + +  F+   T G  KP    
Sbjct: 55  DLYEIQDEFIEFFAERGHEPIRRYPVLAKRWRDDVFLVGASIYNFQPWVTSGLVKPPANP 114

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M G+ +F       Y++E  I+   + LT
Sbjct: 115 LVVAQPSIRL----NDVDNVGRTGRHLTCFTMGGHHAFNSEDNTVYWEEETIKYCHEFLT 170

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +D                                IT  +++W        GPC E+
Sbjct: 171 -HIGIDP-----------------------------FEITFIESWWQGGGNE--GPCYEV 198

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVF+Q+       R  +P   +DTG GLER A 
Sbjct: 199 ------------------CVRGVELATLVFIQYRTLPDGGREEIPLKIVDTGYGLERFAW 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--------------------YEGNNIVNHRV- 274
           + Q     YD   F  +I+   ++TG++                    Y     +  RV 
Sbjct: 241 ISQGTPTAYDA-CFGPVIEKLIELTGVEVNEEILAENARVAGMMDIETYADLRELRKRVA 299

Query: 275 ----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                 I DH R  +F++ADG++P+N   GY+ R I+RR +   
Sbjct: 300 DKLGISATELERAAAPMESIYAIADHTRCLAFMLADGVIPSNVKEGYLARLIIRRTLRLM 359

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + LG  E  +  ++      +   YPE+ +    I   +  E+ R+ KT+ RG  +++  
Sbjct: 360 KELGMRES-LKDIMNIQVEFLEGHYPEIREHHEHILSIIDLEEHRYAKTVTRGRRIVEKT 418

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           + +L KD    +  ++  KLYD+HG+P + +++I    G +     +F   + E      
Sbjct: 419 IKYLRKDNKSEMPLEILIKLYDSHGIPPETIKEIAEESGFSVKIPDNFYTLVAE------ 472

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                +    TE     L   Y  T+ + Y+   G +F                     +
Sbjct: 473 -----MNEAETEAPEEDLHLDYPQTELLFYEQPDGLEF--------------------EA 507

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            V  + + G             V+ D+T FY E GGQ  DTG    DG R++I   +K  
Sbjct: 508 SVLGVYEDG-------------VILDRTLFYPEGGGQPSDTGYIESDGCRIRIKHAEKI- 553

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G  V H   +   L+   ++   ID   R QL+ NH+ATHL+  A   +LG H+ Q G+
Sbjct: 554 -GNVVLHRTDDEICLKPGETVRGRIDSDRRLQLTRNHTATHLIVAAARRVLGDHIWQAGA 612

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
                  R D++H + IT  EL  IE   N+ + +N+P+  R M+R+ A       L   
Sbjct: 613 QKGVKSSRIDLSHYRRITQEELDEIERLANEYVMRNIPLDVRWMDRDIAEKRYGFILYQG 672

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G      +RVV +   D        C GTHV  TG+I L+ I     I+ G+ RIE   G
Sbjct: 673 GVVPGSMIRVVEIPGVD-----VQACAGTHVKRTGDIGLIMINRTERIQDGVERIEFSAG 727

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-- 786
             A   +    + L+  A   KV+   +    E  + E++ L+   ++ K ++    +  
Sbjct: 728 ASAIELMQKNRDILRESADVFKVTPSQLPRTSERFFTEWKALRNEVSRLKEEMASLKILE 787

Query: 787 SCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
              ++ D+N +  II   E D  E+K++   L +   +  ++L          ++   ++
Sbjct: 788 VRDRVEDLNGLRVIIDTVEADMDEMKNMALELTES--ADAVILANSEG----QIVGAASD 841

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D + R   ++    SA  + GGGGGG+PH+AQ  G   +K  +A+    S L+
Sbjct: 842 DAVKRGLRINEVIASAARVLGGGGGGKPHLAQGAGKGKDKIHEALEEARSSLE 894


>gi|195491933|ref|XP_002093777.1| GE21485 [Drosophila yakuba]
 gi|194179878|gb|EDW93489.1| GE21485 [Drosophila yakuba]
          Length = 1012

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 234/974 (24%), Positives = 406/974 (41%), Gaps = 125/974 (12%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     +Q
Sbjct: 11  VLTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHQ 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVANSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGP 189

Query: 172 CSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 190 CTEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGTISQLPAHHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH
Sbjct: 250 GFERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKSPVYSGSFPVDGNGALLDTSYRILADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYP
Sbjct: 310 ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAQDKLLTQLVPIVVETLGEAYP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
           E+   +  + + +  E E +    +        VL                         
Sbjct: 367 EMAAKQQAVIDLISHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQ 426

Query: 379 -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + GD  +KL DT+GL  +    +     +   D+  +   +   + +A+ 
Sbjct: 427 VQRSKFPNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLERYRAEVNLAKIKAKG 485

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           +   +  G+   +     ++    Q +    L  +    +      +         + + 
Sbjct: 486 NQREIAGGSLCDLANE--QRIAEAQAMLTKRLAPTDNSHKYAYSFDKASDSYQIPPLKTR 543

Query: 492 VKAIVQQGEIVE-------EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---- 540
           V  ++     V        +  S   + +V   + FY E+GGQ  D G  +    +    
Sbjct: 544 VLGMLLNDAEVSRTQGSRIQQPSTDLISIVTAASNFYYESGGQQSDGGKILVRNHQQPEH 603

Query: 541 ---LQITDVQKKAEGIFVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              L +  V K      VH   +        L     + L +D Q R+  + +H+ATHLL
Sbjct: 604 PHLLDVISV-KHLNDCVVHVCKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLL 662

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + A+ ++      Q  S +T D  + ++    K +  ++++ IED +N +I    PV  +
Sbjct: 663 NAAIRSLFKKVTYQVSSSVTSDQCKLELGLLGKRLQKSDVQLIEDLINRVICSATPVQVQ 722

Query: 653 IMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +++  + +       + G  Y ++  R+V+VE  +  + S  LC GTH ++T E+    I
Sbjct: 723 LLSAAEVLQQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSSFCI 782

Query: 711 VSESSIRAGIRRIEAITGQRARS------HLMGQDEKLK---SLASFLKVSQGNV----- 756
           V+            A+ GQ A +       L  + + L+           ++  +     
Sbjct: 783 VNLKQTNRARFAFTAVAGQAAENVLKTAAVLRHRVDLLEKQFQTDKLTNATEAELQTIRH 842

Query: 757 -----------------VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FM- 797
                            + R+ E+ +  +       K  + + +  L   K  D N F+ 
Sbjct: 843 NMLHTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTNPFIL 902

Query: 798 -----SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFN 851
                S ++ E+        +    K  Q   I+++ +  +        V E+ + ++FN
Sbjct: 903 HYLTSSALVEEIP-------LQRATKLCQDRPILVISVC-DSVVKARCCVPENCITEKFN 954

Query: 852 AVDLARLSAKVLGG 865
           A    +  A    G
Sbjct: 955 ASAWLQSFADTFNG 968


>gi|195441674|ref|XP_002068628.1| GK20581 [Drosophila willistoni]
 gi|194164713|gb|EDW79614.1| GK20581 [Drosophila willistoni]
          Length = 1006

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 231/965 (23%), Positives = 404/965 (41%), Gaps = 113/965 (11%)

Query: 1   MSNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TF+++F   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11  VLTAREIRKTFIDYFTISHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG+   HHTFFEMLGN+SF  YFK  A  +A +LL   ++
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFRDYFKREACSMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D RRLY+T +  D+        E F++W+ + G  + +I+     DNFW M  TGPCGP
Sbjct: 131 IDTRRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPSSRILPFGCRDNFWEMGTTGPCGP 189

Query: 172 CSEIFFDQGEC---IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI  D       +       +       E+WNLVF+Q+ + +      LP   +DTGM
Sbjct: 190 CTEIHIDHQPELASVDERAKLVNAGRSDLTELWNLVFIQYNRHSDGSITQLPSHHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------IVNHRVIVDHLRS 281
           G ER+  +LQ K++NYD DLF  +  +  Q++       +         ++R++ DH R 
Sbjct: 250 GFERLTAILQNKSSNYDTDLFTPIFDSIHQLSRAPAYTGSFQKDAVLDTSYRILADHARM 309

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341
            +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYPE+ 
Sbjct: 310 ITTCLADGMLPDQNQK---LRRVLRKALNLSEHVFAQENLLSRLVPIVVETLGEAYPEMS 366

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK----------------------- 378
             +  + E +  E + +    +        VL+   K                       
Sbjct: 367 IKQSDVIELINHEHDVYKNLRESSSKAFAEVLTEFPKLDDIDLMECPGFVPAYREFQVQR 426

Query: 379 ----DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
               +  + GD  +KL DT+GL  +    +     +   D+  +   +   ++R +    
Sbjct: 427 SKFNNNTIPGDFLYKLTDTYGLTEESFVKLAELENM-NCDLERYRAEVAMAKTRMKKGRE 485

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
            +     +             Q      +      K +          +     + ++  
Sbjct: 486 NVAHTDDDDSIAD-----AQVQLTQRLSISTDNSPKYNYHYDQTNESYEFPQLKTRVLGL 540

Query: 495 IVQQGEI--VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDV 546
           ++   E+  +        + +V + + FY E+GGQ  D G  +          +LQ+  V
Sbjct: 541 LLNAKEVNSIGHLKQSDTISIVTEASNFYYESGGQEEDKGHLLVRSKEEDSKKQLQVESV 600

Query: 547 QKKAEGIFVHHAIV----------ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            K      VH   +          E   L     + L ++ ++R+  + +H+ATHLL+ A
Sbjct: 601 -KHLNNCVVHICRLGPSETEPTQSEEFQLSLGDEVELLVNAEHRQLNTCHHTATHLLNAA 659

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           +  +      Q  S +T +  + ++    K +   +++ IED +N +I   +PV    +N
Sbjct: 660 IRCLFHKVTYQVSSSVTSEQCKLELAVLGKRLQKTDVELIEDLINRLICLGVPVEVDQLN 719

Query: 656 REDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
               +       + G  Y ++  R+V V  ++  + S  LC GTHV++T E+    IV+ 
Sbjct: 720 AAQVLQQNDITMVPGEVYPEQGLRLVQVASDELKLLSKELCCGTHVTNTRELSCFCIVNL 779

Query: 714 SSIRAGIRRIEAITGQRARSHLMG---------------QDEKLKSLAS---------FL 749
                      A+ GQ A   L                 Q +KL +             L
Sbjct: 780 KQTNRARFAFTAVAGQAAEHVLKTAALLRHRVDVLAEQFQKDKLTNATEVELQTIRHNML 839

Query: 750 KVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHII 801
                       + + R+ E+ +  ++      K  +++ + +L   K  D + F+ H I
Sbjct: 840 HTDIKLPYAFKMDTLERINEMLKRLKETSRTTLKEFVEVEMRNLIMEKPLDTHPFILHYI 899

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSA 860
           +   S  ++ +      K+ +   +LV    +        V +  L   FNA       A
Sbjct: 900 T--SSALVEEIPLQRATKLCTDRPILVVSMCDGYVKARCCVPQSCLTKDFNATTWLSSFA 957

Query: 861 KVLGG 865
               G
Sbjct: 958 VTFKG 962


>gi|308509732|ref|XP_003117049.1| CRE-AARS-1 protein [Caenorhabditis remanei]
 gi|308241963|gb|EFO85915.1| CRE-AARS-1 protein [Caenorhabditis remanei]
          Length = 810

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/815 (29%), Positives = 387/815 (47%), Gaps = 58/815 (7%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
              +R +F EFF+   HE+L S+S+IP  ND +L+FTN+GM  FK +     +P  + V 
Sbjct: 13  SRELRKSFFEFFKSKNHEILKSASVIPAENDSSLLFTNAGMNQFKPLILSSSEP--KRVA 70

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE-RAIQLAWDLLTKEFDLD 121
            +QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F +  A Q AWD L K   +D
Sbjct: 71  NIQKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKQEACQFAWDYLVKTLSID 130

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY++ +         ED E  ++WK+I G+ +D+I+     +NFW M   GPCGPC+
Sbjct: 131 SDRLYVSYFGGIERLGLPEDRECREIWKRI-GIPSDRILPF-VAENFWEMGSAGPCGPCT 188

Query: 174 EIFFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           EI +D+     GG   SS     +  +EIWN+VFM   + +      L K  IDTGMG E
Sbjct: 189 EIHYDR----IGGRNASSLVNIDDSVVEIWNIVFMSNIRDSSGHIHNLGKNHIDTGMGFE 244

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEG----NNIVNHRVIVDHLRSSSFL 285
           R+ +V+Q + +N+D D F  ++     +T   +KY G          R++ DH+R+++  
Sbjct: 245 RLLSVVQNRNSNFDTDAFTPILDKITSLTKNKLKYNGTLSSREDAVFRLVADHVRAATVA 304

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM----------G 334
           I+DG +P   G G+++R++MRR+       LG     +  L+P + + M           
Sbjct: 305 ISDGAIPDGTGSGFIVRKMMRRSFLQGNSKLGIERFGLSDLVPVVISTMVPFLVRITSDK 364

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
             YPE+ ++   I +T + E+ +F KT+D+   + DGV +   K  +++G  AF L++TH
Sbjct: 365 EVYPEIEKSSNEIIKTFKDEETQFWKTVDKAKKMFDGVANE-NKSPVISGRKAFNLFETH 423

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           GLPL +  ++    G   +D   F +  LE Q+   +A  L L    ++    +  +KY 
Sbjct: 424 GLPLSVTVEMARNIG-KEVDEKEFERCQLEAQKLSQKASQLKLPVSASDFPTHTDNDKYS 482

Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513
            T   G      S  +     +  + P +       + +  + +  E        +K  V
Sbjct: 483 YTYKNGRYGKSISFTLTNFNYLFLEFPKV------QTRILEVYKNQEKANCLNENEKGFV 536

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V +   FY E GGQ  DTG  + D     ++   +K   G            ++ ++ + 
Sbjct: 537 VLENCQFYGEQGGQTSDTGKLLIDKKEIFEVESAKKLENGAVTVLFGRALQPIQRDLRVE 596

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT-----HSKPI 627
             +D + R  +   HSATHLL+ AL    G    Q GS +  + LRFD +       K  
Sbjct: 597 QQLDEKKREGVMKAHSATHLLNWALQK-SGLGCGQKGSSVDCNRLRFDYSTKDDVMEKEQ 655

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686
            S  LK  E+ +N+ I      +      E+A       + +         V  V    G
Sbjct: 656 RSEVLKQGEERMNEFIRHGGETIILETTIEEAKKIENLQSDVKEDRIGNSTVRVVSLGIG 715

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C GTHV     I  + I+S+ S+   +RRI A+TG+ A+      +   K L 
Sbjct: 716 RDVPVECCSGTHVHDVKVIEDIAIMSDKSMGQRLRRIIAVTGEEAQKCREYAETSYKDLK 775

Query: 747 SFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKR 777
           S     +  +  +++     + ++ R   L+  KR
Sbjct: 776 SKEPKERSKIAKKIDWKRVPLVDQSRISALLKQKR 810


>gi|116180548|ref|XP_001220123.1| hypothetical protein CHGG_00902 [Chaetomium globosum CBS 148.51]
 gi|88185199|gb|EAQ92667.1| hypothetical protein CHGG_00902 [Chaetomium globosum CBS 148.51]
          Length = 835

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/798 (31%), Positives = 377/798 (47%), Gaps = 89/798 (11%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           MLGN+SFG YFK+ AIQ +W+LLTK + LD  RLY+T ++ +         EA +LW  +
Sbjct: 1   MLGNWSFGDYFKKEAIQWSWELLTKVYGLDPNRLYVTYFEGNPDMNLEPDLEAKQLWLDV 60

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
            G+  D I+     DNFW M + GPCGPCSE+ +D+           +++    +E+WN 
Sbjct: 61  -GVPEDHILPGDMKDNFWEMGDQGPCGPCSEVHYDKVGGRNAAH-LVNQDDPLVVEVWNN 118

Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM- 262
           VFMQF++Q  +    LP   IDTGMG ER+ + LQ KT+NY  D+F  L    ++VTG  
Sbjct: 119 VFMQFDRQKDKSLMPLPAKHIDTGMGFERLVSALQNKTSNYATDIFTPLFARIQEVTGAR 178

Query: 263 ----KYEGNN----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314
               KY  ++       +RV  DH+R  SF IADG  P N GRGYV+RR++RR + YAR 
Sbjct: 179 SYTDKYGKDDVDGIDTAYRVAADHIRLLSFAIADGAAPNNIGRGYVVRRVLRRGVRYARK 238

Query: 315 LGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
               E       +LPAL  +MG  +PEL + +  I+E L  E+  F  TLDRG    +  
Sbjct: 239 YFQAEIGSFFSSILPALVDQMGEQFPELKKKQEDIKEILDEEEVAFAVTLDRGEKQFEKY 298

Query: 373 LSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
            +   K  +  L+G   ++LYDT G P D+ + +   RGL  ID       +E  R +AR
Sbjct: 299 AALAVKSGENKLSGADVWRLYDTFGFPEDLTKLMAEERGLT-ID----EAEVEVAREKAR 353

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
             S  +                    F   ++ + ++                    +  
Sbjct: 354 EASKAVKEAVQ--------------TFPKLNVHQIAELENTVNLPRPDSEAKYKKGDIKG 399

Query: 491 IVKAIVQQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDV 546
            V+ +    E     +E      + ++ D+T FYAE+GGQ+ DTG  + DG+   ++ DV
Sbjct: 400 KVQLVFTGSEFRKTSKELPPKTPLGLLLDKTNFYAESGGQVADTGRILIDGVAEFKVLDV 459

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q+   G  VH+  +E G L     ++   D   R+ +  NH+ TH+L+HAL  +LG  V+
Sbjct: 460 QE-FGGYIVHNGYLEYGELTAGDEVICEYDELRRQPIRNNHTGTHVLNHALREVLGEEVN 518

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAA 665
           Q GS +  D LRFD +H   ++  E+K IE   N+ I ++     + ++   A    G  
Sbjct: 519 QKGSLVDQDKLRFDFSHKSQVSLEEIKKIEAMSNEDIQRDFKTYAKDVDLSLAREIEGVR 578

Query: 666 ALLGTKYNDRVRVVS-----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           A+ G  Y D VRVVS            +  +    S   CGGTHV STG I  L IV ES
Sbjct: 579 AVFGETYPDPVRVVSVGVDVDELLKNPKNPEWRKVSVEFCGGTHVDSTGAIKDLIIVEES 638

Query: 715 SIRAGIRRIEAITGQRA-------------RSHLMGQD------EKLKSLASFLKV---- 751
            I  GIRRI A TG  A               H+   +        +K+ A  L      
Sbjct: 639 GIAKGIRRIVAYTGDGAHQAQRDAKTFSEKLEHIQALEFGPQKAADIKAAAVELDALTIS 698

Query: 752 --SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEV 804
             ++ ++  R  +I +E    Q    K + +  ++ +  H   + N     F+ H+    
Sbjct: 699 ALTKEDLRQRFAKIQKEVVDEQKKRQKAESKTALDTVQDHFKKEENKEAKFFVGHLPISA 758

Query: 805 DSKELKSVMDALQKKIQS 822
           +SK L  V    + K + 
Sbjct: 759 NSKALADVQTYYKSKDKD 776


>gi|195014128|ref|XP_001983963.1| GH16181 [Drosophila grimshawi]
 gi|193897445|gb|EDV96311.1| GH16181 [Drosophila grimshawi]
          Length = 1012

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/846 (26%), Positives = 373/846 (44%), Gaps = 97/846 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TF+++F   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11  VLTAREIRKTFIDYFTANHEHKFIRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F +W+ + G  A +I+   + DNFW M  TGPCGP
Sbjct: 131 IDPSRLYVTYFAGDKLLGIPADMECFDIWRSL-GFPAARILPFGSKDNFWEMGTTGPCGP 189

Query: 172 CSEIFFDQGECIPGG-----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           C+EI  D       G         +       E+WNLVF+Q+ +        LP   +DT
Sbjct: 190 CTEIHIDHRPGSDPGSVEQRAKLVNAGRADLTELWNLVFIQYNRNTDGSITSLPAKHVDT 249

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIV 276
           GMG ER+  +LQ K++NYD DLF  L      ++     G +            ++R++ 
Sbjct: 250 GMGFERLTALLQNKSSNYDTDLFTPLFDGIHSLSKAPVYGGSFPVAENSALLDTSYRILA 309

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G A
Sbjct: 310 DHARMVTACLADGMLPDQNQK---LRRVLRKALSISEQVFSHENLLSQLVPIVVETLGEA 366

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK------------------ 378
           YPE+   +  + E +  E E +    +    +   VL+                      
Sbjct: 367 YPEMSSKQQAVLELIAHEQEVYKNLRESSSKIFAEVLTEFPNLDDIDLMECPGFVPAYRE 426

Query: 379 ---------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
                    +  + GD  +KL DT+GL  D    +     +   D+  +   L   + R 
Sbjct: 427 FQVQRSKFANNTIPGDFLYKLTDTYGLTEDSFVKLAELENM-NCDLERYRAELALAKLRT 485

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +      G         +L+++    Q      L  +    +       +        ++
Sbjct: 486 KEPQRNSGI-----YDLALQQRIAEAQAQLTMRLAATDNSHKYFYSYDAQSETYAIPTLN 540

Query: 490 SIVKAIVQQGEIVEEA------VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----- 538
           S V  I+Q    V          S   + +V   + FY E+GGQ  D G  +        
Sbjct: 541 SRVLGIIQNDAEVSRTLGSRLGESTDTLSIVTAASNFYYESGGQQSDLGKLLVRNKQKPE 600

Query: 539 --IRLQITDVQKKAEGIFVHHAIV----ERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              +L +  V K      VH   +    +   L     ++L +D Q R+  + +H+A HL
Sbjct: 601 QPHQLDVVGV-KCLNDCVVHVCRLATPTDDFELALGDEVLLEVDAQQRQLNTCHHTAIHL 659

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+ A+ ++      Q  S ++ D  + ++    K I  A+++ IED +N  I     V  
Sbjct: 660 LNAAIRSLFNKVTYQVSSAVSSDQCKLELGLLGKRIQKADVEHIEDLINRAICSGSAVQV 719

Query: 652 RIMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           + ++  D +       + G  Y ++  R+++V+  +  + S  LC GTHV++T E+    
Sbjct: 720 QQLSAADVLQQNDITMVPGEVYPEQGLRLINVQCPELNLSSKELCCGTHVTNTKELSCFC 779

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           IV+            A+ GQ A + L          A+ L+        RV+ + ++++ 
Sbjct: 780 IVNLKQTNRARFAFTAVAGQAAENVL--------KTAALLR-------HRVDLLEQQFQT 824

Query: 770 LQLIHA 775
            +L +A
Sbjct: 825 DKLTNA 830


>gi|195167795|ref|XP_002024718.1| GL22619 [Drosophila persimilis]
 gi|194108123|gb|EDW30166.1| GL22619 [Drosophila persimilis]
          Length = 1012

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/1017 (24%), Positives = 425/1017 (41%), Gaps = 140/1017 (13%)

Query: 1    MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
            +     IR TF++FF   + H+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11   VLTAREIRKTFIDFFTVNHEHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60   AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
             V   QKCVR GGKHNDL  VG+   HHTFFEMLGN+SFG YFK  A+  A +LL   ++
Sbjct: 71   RVVNSQKCVRVGGKHNDLSVVGQDGYHHTFFEMLGNWSFGDYFKRPAL-WALELLRGPYN 129

Query: 120  LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
            +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 130  IDPGRLYVTYFAGDKLLGIPADMECFEIWRSL-GFPASRILPFGCKDNFWEMGATGPCGP 188

Query: 172  CSEIFFDQGEC---IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            C+EI  D       +       +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 189  CTEIHIDHRPELGSVADRGKLVNAGRSDLTELWNLVFIQYNRNPDGSISQLPAHHVDTGM 248

Query: 229  GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
            G ER+A +LQ K++NYD DLF  L    +Q++     G +            ++R++ DH
Sbjct: 249  GFERLAAILQSKSSNYDTDLFSPLFDGIQQLSKAPVYGGSFPETSNAALLDTSYRILADH 308

Query: 279  LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
             R  +  +ADG+LP    +   LRR++R+A+  +  +   E L+  L+P +   +G AYP
Sbjct: 309  ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHEKLLSQLVPIVVETLGEAYP 365

Query: 339  ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
            E+   +  + + +  E + +    +        VL+                        
Sbjct: 366  EMSAKQEAVIDLINHEHDVYKNLRESSSKAFAEVLTEFPNLDDIDLMECPGFVPAYREFQ 425

Query: 379  -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                   +  + GD  +KL DT+GL  +    +     +   D+  +   +   + +++ 
Sbjct: 426  VQRSKFPNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLDRYRAEVSLAKIKSKE 484

Query: 432  HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR-GSKFMKEDRKVLCQKPPIDLTNGVSS 490
                 G         +L+++    Q      LR      K       +     +    S 
Sbjct: 485  SQREDGGICD----VALEQRISEAQATLTKRLRPTDNSHKYVYSFDSENESYKIPTLRSR 540

Query: 491  IVKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR----- 540
            +V  ++   E+     S        + +V   + FY E+GGQ  D G  +          
Sbjct: 541  VVGMLLNDAEVSRTQGSRLQDTSDTLSIVTAASNFYYESGGQQSDAGQILVSNAHKPEQP 600

Query: 541  ---LQITDVQKKAEGIFVHHAIV-----ERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
               L +  V K      VH   +     +   +     + L +D   R+  + +H+ATHL
Sbjct: 601  HHLLNVIRV-KHLNDCVVHVCRLAAPADDHFEVAIGDEVELQVDSGTRQLNTCHHTATHL 659

Query: 593  LHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVT 651
            L+ A+ ++      Q  S +T +  + ++    K I  A+++ IED +N II     V  
Sbjct: 660  LNAAIRSLFNKVTYQVSSSVTSEQCKLELGLLGKRIQKADVQLIEDLINRIICSATTVQV 719

Query: 652  RIMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
             +++  D +       + G  Y ++  R++SV+  D  + S  LC GTHV++T E+    
Sbjct: 720  ELVSAADVLQENDITMVPGEVYPEQGLRLISVQCPDMQLSSKELCCGTHVTNTSELSCFC 779

Query: 710  IVSESSIRAGIRRIEAITGQRARSHLMG---------------QDEKLKSLAS------- 747
            IV+            A+ GQ A + L                 Q +KL +          
Sbjct: 780  IVNLKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDMLEQQFQTDKLTNATEVELQTIR 839

Query: 748  --FLKVSQG-------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FM 797
               L            + + R+ ++ +  ++      K  +++ + +L   K  D + F+
Sbjct: 840  HNMLHTDIKLPYAFKMDTLERIHDMLKRIKETSRTTLKEFVEVEMRNLLQEKPVDTHPFI 899

Query: 798  SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856
             H I+   S  ++ +      K+ S   +LV    +        V ++ +++ F+A    
Sbjct: 900  LHYIT--SSALVEEIPLQRATKLCSDRPILVVSMCDSVVKARCCVPQNSVNQEFDASSWL 957

Query: 857  RLSAKVLGGGGGGGRPHMAQSGGPNG----------------NKADQAIAGVASFLK 897
            +  A   GG        +A   G N                  + +QA+A    + K
Sbjct: 958  QSFAATFGG-------QVAAPKGQNPKIVCNMKGRKVSNLFEEQLEQALAKAHQYAK 1007


>gi|309365022|emb|CAP23713.2| CBR-AARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 807

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/799 (29%), Positives = 382/799 (47%), Gaps = 76/799 (9%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
            +R +F +FFQ   HE++ S+S+IP  ND +L+FTN+GM  FK++     +P  + V  +
Sbjct: 26  ELRKSFFDFFQSKKHEIVKSASVIPLENDGSLLFTNAGMNQFKSLILSSTEP--RRVANI 83

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDLDQR 123
           QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AWD L +   +D  
Sbjct: 84  QKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACKFAWDYLVEVLGIDSE 143

Query: 124 RLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           RLY++ +         ED E  ++WK I G+ + +I+     +NFW M   GPCGPC+EI
Sbjct: 144 RLYVSYFGGIEKLGLPEDRECKEIWKNI-GVPSHRILPF-VAENFWEMGAAGPCGPCTEI 201

Query: 176 FFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
            +D+     GG   SS     +  +EIWN+VFM   + +  + + L +  IDTGMG ER+
Sbjct: 202 HYDR----IGGRDASSLVNIDDSVVEIWNIVFMSNVRDSSGKIYNLGRNHIDTGMGFERL 257

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEG----NNIVNHRVIVDHLRSSSFLIA 287
            +V+Q K +N+D D+F  ++     +T   +KY G          R++ DH+R+S+  I+
Sbjct: 258 LSVVQNKNSNFDTDVFIPILAKISSLTKKNLKYNGSVSSQEDAVFRLVADHVRASTIAIS 317

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEM---GSAYPELIQA 343
           DG +P   G G+++R++MRR+       LG     +  L+P + + +    + Y E+ ++
Sbjct: 318 DGAIPDGTGNGFIVRKMMRRSFLQGNSKLGIDRFGLSDLVPTVISTLVGVKNVYSEVEKS 377

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
              I    + E+ +F KT+D+   + D V ++  K   ++G  AF L++T+GLPL +  +
Sbjct: 378 SDKIINIFKEEETQFWKTVDKAKKMFD-VGANENKSSTISGRKAFNLFETYGLPLSVTIE 436

Query: 404 ILCARGLAGIDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +    G   +D   F +  LE Q+   +A    L     +    S KEKY  +   G   
Sbjct: 437 MARNLG-KEVDEKEFERCQLEAQKLSQKASQFKLPVFAKDFPTHSDKEKYSYSFENGR-- 493

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                  + V + +  + Q  E V      +K  VV ++  FYA
Sbjct: 494 --------------------YAFSKVPTTILQVYQNQEKVVVLKENEKGFVVLERCQFYA 533

Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ  D G  + DG    ++   +K   G            ++ ++ +   +D + R 
Sbjct: 534 EQGGQKSDIGKLLADGRNVFEVESAKKLDNGSVTVLFGRALEPIQKDLRVEQQLDEKRRE 593

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----THSKPITSAELKSIE 636
            +   HSATHLL+ AL    G    Q GS +  + LRFD      +  K   +  LK +E
Sbjct: 594 GVMKAHSATHLLNWALQR-SGLGNGQKGSSVDCNRLRFDYSTGDDSLDKSQRTEALKHLE 652

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
             +N+ I +           E+A       + +         V  V    G   S   C 
Sbjct: 653 HILNEFIMKGGLTSVIETTLEEAKKIKNLQSDVKEDRIGDSSVRVVTLGSGVNVSVECCS 712

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           GTHV     I  + I+S+ S+   +RRI A+TG+ A+      ++  + L+S        
Sbjct: 713 GTHVHDVSIIEDVAIMSDKSMGQNLRRIVAVTGEEAKKCREYAEKVFEELSST------- 765

Query: 756 VVGRVEEIWEEYRKLQLIH 774
                 E  E  + L+++ 
Sbjct: 766 ------EFKERNKILKVLK 778


>gi|26554308|ref|NP_758242.1| alanyl-tRNA synthetase [Mycoplasma penetrans HF-2]
 gi|81747470|sp|Q8EUR6|SYA_MYCPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|26454317|dbj|BAC44646.1| alanyl-tRNA synthetase [Mycoplasma penetrans HF-2]
          Length = 930

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/957 (27%), Positives = 444/957 (46%), Gaps = 94/957 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  +L+FF+   H  + S SLIP ND +L++ NSG+   K  F+G+E P  + +T
Sbjct: 6   TTNEIRKLWLDFFKSKNHTEVESKSLIPKNDDSLLWINSGVATLKTFFSGKENPPSKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             Q+C+R     ND++NVG T+RHHTFFEMLGNFS G YF++ AI+   +L+ K F LD 
Sbjct: 66  NSQRCLRT----NDIENVGLTSRHHTFFEMLGNFSIGDYFRKEAIEFGAELVFKVFKLDP 121

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           +++YITVY+ED+E+F LW K +G     I++   + NFW +  +GPCGPC+EI++D+GE 
Sbjct: 122 KKIYITVYEEDQESFDLWVK-NGAIKSHILKCDKSRNFWEIG-SGPCGPCTEIYYDRGEK 179

Query: 183 I-----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
                    L     E +RYIEIWN+VF +F    K     L + +IDTG GLER+A +L
Sbjct: 180 YDFQKLGEKLFFEDIENDRYIEIWNIVFSEFNNDGKNNYTKLARQNIDTGAGLERLACIL 239

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR-------------VIVDHLRSSSF 284
           Q+   NYD D F ++    E+ +  KY+ N     +             VI+DH ++  F
Sbjct: 240 QDVPTNYDTDAFVNVRSVIEKYSNKKYDNNLYFESKKDSEKVFINKCFSVIIDHFKAVIF 299

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I+DG LP+N+ RGY+LR+++RR+  Y   L  +      ++  + +   + YP L +  
Sbjct: 300 AISDGALPSNKDRGYILRKLLRRSFLYLNYLKVSFENSKEIINTIISNNETYYPYLKENL 359

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
             +  T++ E + + ++++     L+ +       ++L+    F L  T+G P++I+Q +
Sbjct: 360 NNVINTIKLEYDLYCESINNSFKKLNEL----LNKKLLDASDLFNLVTTYGFPIEIVQSL 415

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              + L      + N  L E    +   S    S +  KI F   EK      +  +   
Sbjct: 416 ---QELLTQSKDAKNLKLAEDIINSINPSDKKISISKLKIEFDEFEKLFDEHRLIANANA 472

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVS-------SIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
             K M+   + L   P +D +            ++K   +  + VEE  +     V+ D+
Sbjct: 473 SVKGMENQNEELLNLPTLDSSFDYEIESVKNSKVLKIFDENWKPVEEIKNKD-CWVILDK 531

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T F+A  GGQ  DTG       +  + DV K  +G  +H  +  +G  +    +   I+ 
Sbjct: 532 TCFFATTGGQEHDTGKIN----KFDVVDVIKSPQGYHLHKVV--KGTFKIGEKVDGQINS 585

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R  +   HS+ HL+H AL  ++   + Q G+  + + +  D + ++ +T  E+  +E 
Sbjct: 586 FDRNIIRKQHSSEHLMHSALKRVVSPTIKQEGAFKSIEKITLDFSFNRKLTYKEILGVEK 645

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            V  IIA   P    +   ++A   GA       Y      + V Y      S  +CGGT
Sbjct: 646 EVKRIIATKNPTQVLMKTLDEAKEMGAIGYFEQVYKKISGKLRVLY--LCPESIEICGGT 703

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITG------------QRARSHLMGQDEKLKSL 745
           HV +TG+I    +   +S  +G  RIEA++             ++A        +K K L
Sbjct: 704 HVYNTGDIEDFMVTGLTSKGSGSWRIEAVSSNYLVDKFKNNVIKKAIDDFNNYFKKYKEL 763

Query: 746 -------ASFLKVSQGNV----VGRVEE-IWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
                    + K    ++    +  + E +  +   L +   K  L     ++  +K  +
Sbjct: 764 NIKDDEVEKYKKTDINSIHYLELKEINEILKNKINTLVIRKEKENLSKESNEIK-NKFTE 822

Query: 794 VNFMSH--IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
           V   +   ++ ++D K L + +     + +S + +++    +     ++   E      N
Sbjct: 823 VKESTKLFLLKDIDRKLLFNSLVLAINEAKSTVFLVI-NEVDGVIQYVLCSNESFAKNNN 881

Query: 852 ------AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ-----AIAGVASFLK 897
                 A DL         GG GGGR ++ Q       K D+      +  + + LK
Sbjct: 882 LDFNLYAKDLNAKL-----GGKGGGRSYLVQGT---ILKIDEKELNKILDTINAKLK 930


>gi|18976642|ref|NP_577999.1| alanyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
 gi|22096192|sp|Q8U425|SYA_PYRFU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18892213|gb|AAL80394.1| alanyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
          Length = 914

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/971 (22%), Positives = 396/971 (40%), Gaps = 191/971 (19%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+     G+  P  
Sbjct: 58  TLDEMREKFLSFFEKHEVYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLTISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKHIYWIDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +    +                             T  +N W+    G  GP  
Sbjct: 174 FTKELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  + +E+  LVFMQ+++               ++   +  
Sbjct: 203 EVLY------------------KGLEVATLVFMQYKKAPANADPSQVVIIKGEKYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------- 271
             +DTG GLER+  + Q     YD  +  ++I+  +++ G++     I+           
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDA-VLGYVIEPLKRMAGVEKIDERILMENSRLAGMFD 303

Query: 272 ----------------------------------HRVIVDHLRSSSFLIADGILPANEGR 297
                                                I DH ++ +F++ADG++P+N   
Sbjct: 304 IEDMGDLRYLREQVAKRVGISVEELERLIRPYELIYAIADHTKALTFMLADGVVPSNVKA 363

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ R ++R+++ + R LG   P +  ++     E+   +PE  + + +I E +  E+++
Sbjct: 364 GYLARLLIRKSIRHLRELGLEVP-LAEIVAMHIKELSPTFPEFKEMEDIILEMIELEEKK 422

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + +TL RG  L+   ++ L K     +  +     Y++HGL  +I+++I    G+     
Sbjct: 423 YAETLRRGSDLVKREIAKLKKKGANEIPLEKLITFYESHGLTPEIVKEIAEKEGVKVHIP 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F   +      A+     +     E + F L +    T+ + Y+              
Sbjct: 483 DNFYSLV------AKEAEKQVEEKEEEVVDFELVKDLPDTRTLYYEDP------------ 524

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V  +++               VV DQT FY E GGQ  DTG  +
Sbjct: 525 --------FMKEFDAKVLKVIED-------------WVVLDQTAFYPEGGGQPYDTGILV 563

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG  +++T+VQK   G  + H +    + +    +   ID++ R Q   +H+ TH+L  
Sbjct: 564 VDGEEVKVTNVQKV--GKVILHKVERPELFKEGTIVHGRIDWERRIQHMRHHTGTHVLMG 621

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS ++ D  R D+TH K I+  E+K IE   N ++ +N  V    + 
Sbjct: 622 ALVRVLGKHVWQAGSQLSTDWARLDITHYKRISDEEIKEIERLANRVVMENRRVRWEWLP 681

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R +A       L   G      +R++++E           CGGTH+ STG I  + I+  
Sbjct: 682 RTEADEKYGFRLYQGGVVPGRIIRILNIE-----DWDVQACGGTHLPSTGLIGPIKILRT 736

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I+ G+ RI    G+ A      + E +K  +  L+V    +    E  + E+++ +  
Sbjct: 737 ERIQDGVERIIFACGEAAVREWQKEREIIKRTSQILRVPPEKLPETAERFFNEWKEARKE 796

Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K + +L        +    K+ ++ F+  I+      +L+   + L+K  ++ +++LV
Sbjct: 797 VEKLRKELAKLLVYELESKVEKVGEIEFIGEIVEG-SMDDLREAANKLRK--ENRVVVLV 853

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARL---SAKVLGGGGGGGRPHMAQSGGPNGNKA 885
                K+   ++ V + L   + A + A+L    A   GGG    R  +AQ    +  KA
Sbjct: 854 ----NKEGHFVVAVGDKLP--YTAGEFAKLITSVAGGGGGG----RKELAQGKIRDIEKA 903

Query: 886 DQAIAGVASFL 896
            +AI  V   L
Sbjct: 904 KEAIEKVKGSL 914


>gi|195337619|ref|XP_002035426.1| GM14698 [Drosophila sechellia]
 gi|194128519|gb|EDW50562.1| GM14698 [Drosophila sechellia]
          Length = 1012

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/968 (24%), Positives = 407/968 (42%), Gaps = 113/968 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11  VLTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   F+
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPFN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M+ TGPCGP
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMSATGPCGP 189

Query: 172 CSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 190 CTEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH
Sbjct: 250 GFERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKAPVYSGSFPDGGNAAVLDTSYRILADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYP
Sbjct: 310 ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
           E+   +  + + +  E E +    +        VL                         
Sbjct: 367 EMAAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQ 426

Query: 379 -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + GD  +KL DT+GL  +    +     +   D+  +   +   + +A+ 
Sbjct: 427 VQRCKFSNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLERYRAEVSLAKIKAKG 485

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           +      G+   +     ++    Q +    L  +    +      ++        + + 
Sbjct: 486 NQRETAGGSLCDLATE--QRLSEAQAMLTKHLGATDNSHKYAYSFHKESDSYQIPPLKTR 543

Query: 492 VKAIVQQGEIVE-------EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---- 540
           V  ++     V        +  S   + +V   + FY E+GGQ  D G  +    +    
Sbjct: 544 VLGMLLNDAEVSRTQGSRIQQPSTDLISIVTAASNFYYESGGQQSDGGKILVSNHQQPEH 603

Query: 541 ---LQITDVQKKAEGIFVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              L++  V K      VH   +        L     + L +D Q R+  + +H+ATHLL
Sbjct: 604 PHSLEVISV-KHLNDCVVHVCKLSSPTDAFQLAIGDEVELLVDAQQRQLNTCHHTATHLL 662

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + A+ ++      Q  S +T +  + ++    K I  +++K IED +N +I    PV  +
Sbjct: 663 NAAIRSLFKKVTYQVSSSVTSNQCKLELGLLGKRIQKSDVKLIEDLINRVICSAAPVEVQ 722

Query: 653 IMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +++  + +       + G  Y ++  R+V+VE  +  + S  LC GTH ++T E+    I
Sbjct: 723 LLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFCI 782

Query: 711 VSESSIRAGIRRIEAITGQRARSH------LMGQDEKLK---SLASFLKVSQGNV----- 756
           V+            A+ GQ A +       L  + + L+           ++  +     
Sbjct: 783 VNLKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKLTNATEAELQTIRH 842

Query: 757 -----------------VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMS 798
                            + R+ E+ +  +       K  + + +  L   K  D + F+ 
Sbjct: 843 NMLHTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFIL 902

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLAR 857
           H I+   S  ++ +      K+     +LV    +        V E+ + ++FNA    +
Sbjct: 903 HYIT--SSALVEEIPLQRATKVCQDRPILVISVCDSVVKARCCVPENCITEKFNASAWLQ 960

Query: 858 LSAKVLGG 865
             A    G
Sbjct: 961 SFADTFNG 968


>gi|6176438|gb|AAF05591.1|AF188716_1 alanyl-tRNA synthetase [Drosophila melanogaster]
          Length = 1012

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 230/974 (23%), Positives = 403/974 (41%), Gaps = 125/974 (12%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11  VLTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGP 189

Query: 172 CSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 190 CTEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH
Sbjct: 250 GFERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYP
Sbjct: 310 ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
           E+   +  + + +  E E +    +        VL                         
Sbjct: 367 EMAAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQ 426

Query: 379 -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + GD  +KL DT+GL  +    +     +   D+  +   +   + +A+ 
Sbjct: 427 MQRCKFSNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLERYRAEVNLAKLKAKG 485

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           +      G+   +    +    A   +   L       K       +     +    + +
Sbjct: 486 NQRETAGGSLCDLATEQR-IAEAQAMLTKRLTPTDNSHKYTYSFDKESDSYQIPPLKTRV 544

Query: 492 VKAIVQQGEIVEEAVSGQKVE--------VVFDQTPFYAEAGGQLGDTGCAIGDGIR--- 540
           +  ++   E+      G +++        +V   + FY E+GGQ  D G  +    +   
Sbjct: 545 LGMLLNDAEV--SRTQGSRIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVSNHQQPD 602

Query: 541 ----LQITDVQKKAEGIFVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHL 592
               L +  V K      VH   +        L     + L +D Q R+  + +H+ATHL
Sbjct: 603 HPHSLDVIGV-KHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHL 661

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+ A+ ++      Q  S ++ D  + ++    K I   +++ IED +N +I    PV  
Sbjct: 662 LNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSAAPVEV 721

Query: 652 RIMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           ++++  + +       + G  Y ++  R+V+VE  +  + S  LC GTH ++T E+    
Sbjct: 722 QLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFC 781

Query: 710 IVSESSIRAGIRRIEAITGQRARSH------LMGQDEKLK---SLASFLKVSQGNV---- 756
           IV+            A+ GQ A +       L  + + L+           ++  +    
Sbjct: 782 IVNLKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKLTNATEAELQTIR 841

Query: 757 ------------------VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FM 797
                             + R+ E+ +  +       K  + + +  L   K  D + F+
Sbjct: 842 HNMLHTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFI 901

Query: 798 ------SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                 S ++ E+        +    K      I+++ +      +   V  + + ++FN
Sbjct: 902 LHYITSSALVEEIP-------LQRATKLCPDRPILVISVCDSVVKARCCVPEKCITEKFN 954

Query: 852 AVDLARLSAKVLGG 865
           A    +  A    G
Sbjct: 955 ASAWLQSFADTFNG 968


>gi|24658214|ref|NP_523932.2| mitochondrial alanyl-tRNA synthetase [Drosophila melanogaster]
 gi|74870584|sp|Q9VRJ1|SYAM_DROME RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor
 gi|7295490|gb|AAF50804.1| mitochondrial alanyl-tRNA synthetase [Drosophila melanogaster]
 gi|21711683|gb|AAM75032.1| LD11251p [Drosophila melanogaster]
 gi|25012817|gb|AAN71499.1| RE74040p [Drosophila melanogaster]
 gi|220943558|gb|ACL84322.1| Aats-ala-m-PA [synthetic construct]
          Length = 1012

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 230/974 (23%), Positives = 403/974 (41%), Gaps = 125/974 (12%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11  VLTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVVNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGP 189

Query: 172 CSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 190 CTEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+  VLQ K++NYD DLF  +    +Q         +            ++R++ DH
Sbjct: 250 GFERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYP
Sbjct: 310 ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFAHDKLLTQLVPIVVETLGEAYP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
           E+   +  + + +  E E +    +        VL                         
Sbjct: 367 EMAAKQQAVIDLICHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQ 426

Query: 379 -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + GD  +KL DT+GL  +    +     +   D+  +   +   + +A+ 
Sbjct: 427 MQRCKFSNNTIPGDFLYKLTDTYGLTEESFLKLAELENM-NCDLERYRAEVSLAKLKAKG 485

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
           +      G+   +    +    A   +   L       K       +     +    + +
Sbjct: 486 NQRETAGGSLCDLATEQR-IAEAQAMLTKRLTPTDNSHKYTYSFDKESDSYQIPPLKTRV 544

Query: 492 VKAIVQQGEIVEEAVSGQKVE--------VVFDQTPFYAEAGGQLGDTGCAIGDGIR--- 540
           +  ++   E+      G +++        +V   + FY E+GGQ  D G  +    +   
Sbjct: 545 LGMLLNDAEV--SRTQGSRIQQPFTDLISIVTAGSNFYYESGGQQSDGGKILVSNHQQPD 602

Query: 541 ----LQITDVQKKAEGIFVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHL 592
               L +  V K      VH   +        L     + L +D Q R+  + +H+ATHL
Sbjct: 603 HPHSLDVIGV-KHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHL 661

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+ A+ ++      Q  S ++ D  + ++    K I   +++ IED +N +I    PV  
Sbjct: 662 LNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGKRIQKTDVQLIEDLINRVICSAAPVEV 721

Query: 652 RIMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
           ++++  + +       + G  Y ++  R+V+VE  +  + S  LC GTH ++T E+    
Sbjct: 722 QLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSCFC 781

Query: 710 IVSESSIRAGIRRIEAITGQRARSH------LMGQDEKLK---SLASFLKVSQGNV---- 756
           IV+            A+ GQ A +       L  + + L+           ++  +    
Sbjct: 782 IVNLKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFQTDKLTNATEAELQTIR 841

Query: 757 ------------------VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FM 797
                             + R+ E+ +  +       K  + + +  L   K  D + F+
Sbjct: 842 HNMLHTDIKLPYAFKMDTLERITEMLKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFI 901

Query: 798 ------SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                 S ++ E+        +    K      I+++ +      +   V  + + ++FN
Sbjct: 902 LHYITSSALVEEIP-------LQRATKLCPDRPILVISVCDSVVKARCCVPEKCITEKFN 954

Query: 852 AVDLARLSAKVLGG 865
           A    +  A    G
Sbjct: 955 ASAWLQSFADTFNG 968


>gi|57641502|ref|YP_183980.1| alanyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
 gi|68735034|sp|Q5JIL7|SYA_PYRKO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|57159826|dbj|BAD85756.1| alanyl-tRNA synthetase [Thermococcus kodakarensis KOD1]
          Length = 917

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/971 (21%), Positives = 391/971 (40%), Gaps = 189/971 (19%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+     G+  P  
Sbjct: 58  TLDEMREKFLSFFEKHESYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLTISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +    +                             T  +N W+    G  GP  
Sbjct: 174 FTKELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  R +E+  LVFMQ+++                    +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPADADPSQVVEIKGDYYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------- 271
             +DTG GLER+  +       YD  +  ++I+  +++ G++     I+           
Sbjct: 245 RVVDTGYGLERLVWMSHGTPTAYDA-VLGYVIEPLKKMAGVEKIDERILMENSRLAGMFD 303

Query: 272 ----------------------------------HRVIVDHLRSSSFLIADGILPANEGR 297
                                                I DH ++ +F++ADG++P+N   
Sbjct: 304 IEDMGDLRYLREQVAKRVGISVEELEKAVRPYELIYAIADHTKALTFMLADGVIPSNVKA 363

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ R ++R+++ + R LG   P +  ++     E+   +PE  + + +I + +  E++R
Sbjct: 364 GYLARLLIRKSIRHLRELGLEIP-LAEIVAMHIKELSPTFPEFKEMEDVILDIINVEEKR 422

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + +TL RG  L+   ++ L K  I  L  +     Y++HGL  +I+ ++    G+     
Sbjct: 423 YAETLRRGSDLVKREIAKLKKKGINELPLEKLILFYESHGLTPEIVAEVAEKEGIKVNIP 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F   + ++  +               + F L +    T+ + Y+     +F     KV
Sbjct: 483 DNFYTLVAKEAEK----QAEKKEAAEYVVDFELVKDLPDTRTLYYEDPFMKEFDARVLKV 538

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           +                                    VV DQT FY E GGQ  DTG   
Sbjct: 539 IAD---------------------------------WVVLDQTAFYPEGGGQPYDTGVLE 565

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G ++++T+VQK   G  + H + +  + +  +++   +D+  R Q   +H+ TH+L  
Sbjct: 566 VNGEKVKVTNVQKV--GKVILHKVEKPELFKEGVTVHGRLDWDRRIQHMRHHTGTHVLMG 623

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +  D  R D++H K IT  EL+ IE   N ++ +N  V    + 
Sbjct: 624 ALVRVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRVVMENRKVTWEWLP 683

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R +A       L   G      +RV+ +E           CGGTH+ +TG I  + I+  
Sbjct: 684 RTEAEMKYGFRLYQGGVVPGRVIRVLKIE-----DWDVQACGGTHLPNTGLIGPIKILRT 738

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I+ G+ RI    G+ A + +   +  LK  A   +V    V    E  + E+++ +  
Sbjct: 739 ERIQDGVERIIFAAGEAAINWMQETERLLKRTAEIFRVPPEKVPETAERFFNEWKEARKE 798

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K + +L    +        K+ +V F+  ++      +L+   + L+K  ++ +++L+
Sbjct: 799 VEKLRKELAKLLVYELQEKVEKVGNVEFIGAVVEG-TIDDLREAANRLRK--ENRVVVLI 855

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARL---SAKVLGGGGGGGRPHMAQSGGPNGNKA 885
                     ++ V + L     A +LA++    A   GGG    R  +AQ    N  KA
Sbjct: 856 SREG----HFVVAVGDGL--DLKAGELAKVITSVAGGGGGG----RKELAQGRIKNPLKA 905

Query: 886 DQAIAGVASFL 896
           ++AI  V   L
Sbjct: 906 EEAIEEVKKML 916


>gi|307212580|gb|EFN88295.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 1019

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 228/851 (26%), Positives = 377/851 (44%), Gaps = 102/851 (11%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + + IR  FL++F K+  H ++ SS + P  D +L FTN+GM  FK IF    +P    
Sbjct: 23  KSANLIRKEFLDYFAKDLKHSIIRSSPVSPITDQSLAFTNAGMNQFKGIFLNYYEPPATK 82

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R GGKHNDL  VG  N HHTFFEMLGN+SFG YFKE A   AW+ LT   D+
Sbjct: 83  VVNSQKCIRVGGKHNDLSVVGNDNYHHTFFEMLGNWSFGDYFKEDACVYAWNFLTNICDI 142

Query: 121 DQRRLYITVYDEDEE--------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            Q+ LY+T +  ++E           +W K+ GL   KI+     DNFW M  +GPCGPC
Sbjct: 143 PQKYLYVTYFGGNKELGIAPDLECKNIWLKL-GLPEGKILPFDIQDNFWEMGPSGPCGPC 201

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI  D  +         ++     +E+WN+VF+Q+E+        LPK  +DTGMGLER
Sbjct: 202 TEIHVDYMKRPTNQAARVNKGYADLMELWNIVFIQYERLENGCIVPLPKHHVDTGMGLER 261

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRSSS 283
           + T+LQ KT+NYD D+F+ +  A ++ T              G     +R++ DH R  +
Sbjct: 262 LVTLLQGKTSNYDTDIFQPIFCAIQKYTKAPEYKGTFNNDDTGKIDYGYRILADHARMIT 321

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
             +AD +LP    +   LR+++R A+     +     ++  L+  +   +G  Y EL   
Sbjct: 322 VALADNMLPEQHPK---LRKVLRNAIDTGEKIFRKTDILAQLVCDVADNLGEVYTELHNN 378

Query: 344 KLLIEETLRSEDERFGKTLD----------------------------RGLVLLDGVLSH 375
              ++  ++ E++ F +  +                             G   L  +L  
Sbjct: 379 LKQVKRIIKFEEDLFNRLRNASNKRWNEMIKIRPELASITDWTAPGLVDGYKNLQTMLKE 438

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
           L K  +L G VAFKLYDT+GL L+ + ++     L   D   F + L+  R ++R     
Sbjct: 439 LCKTNLLPGSVAFKLYDTYGLNLETITELAQIESLH-FDEAGFQKQLDISRYQSRIGFNK 497

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                TEK    L++ +           +     K +           + N   S +  I
Sbjct: 498 NNIVFTEKSLRILEKNHMP---------KTDDSFKYNYTYDGNDYKFPMLN---SKLIGI 545

Query: 496 VQQGEIV----------------------EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           +  G++V                      +   S  ++ ++ D+T  Y+  GGQ+ D G 
Sbjct: 546 IINGQLVTDTNSHIANLNDVNNKISINVSDILNSKDEIGIILDKTICYSLEGGQVSDQGN 605

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVER-------GILRTEMSLVLTIDYQNRRQLSIN 586
                +   I +V+K   G  +H    E+         L      ++ ID Q R     +
Sbjct: 606 IHIKNLFFNIHNVRK-INGYVIHFGKFEKTDIPPSEMYLEIGDDCLVNIDSQIRVDTMKH 664

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQ 645
           H+A HLL+ A+  ++ + V Q    +  + L+F      + +T  +++ IE+ +N++I  
Sbjct: 665 HTAAHLLNAAMKEVMHT-VYQRACTVDMNNLKFQFNPFGEKLTLEQMRMIENRINNVIQS 723

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++ V  + +N    +      L+  +      +  VE     + +   C GTHV +TG +
Sbjct: 724 HVAVTVQTLNSLQLLGQDDITLVPGEIYPYTDIRIVEINAEDLKAKEACCGTHVHNTGVL 783

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-------VVG 758
              Y V+ +S  A    ++A+ G  A       ++    +A    + Q +          
Sbjct: 784 QHFYFVTYTSKGAAKCDVKAVVGPWALRIKQASEKIQHEVAKLENILQNDKFITYETFDA 843

Query: 759 RVEEIWEEYRK 769
           +V +I +E  +
Sbjct: 844 KVNQIQQEINE 854


>gi|14590220|ref|NP_142285.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|6707751|sp|O58035|SYA_PYRHO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3256687|dbj|BAA29370.1| 915aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 915

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 213/970 (21%), Positives = 393/970 (40%), Gaps = 191/970 (19%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+     G+  P  
Sbjct: 58  TLDEMREKFLRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +    +                             T  +N W+    G  GP  
Sbjct: 174 FTKELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  R +E+  LVFMQ+++               ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------- 271
             +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+           
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILMENSRLAGMFD 303

Query: 272 ----------------------------------HRVIVDHLRSSSFLIADGILPANEGR 297
                                                I DH ++ +F++ADG++P+N   
Sbjct: 304 IEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKA 363

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ R ++R+++ + R LG   P +  ++     E+   +PE  + + +I E +  E+++
Sbjct: 364 GYLARLLIRKSIRHLRELGLEVP-LSEIVALHIKELHKTFPEFKEMEDIILEMIELEEKK 422

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + +TL RG  L+   ++ L K  I  +  +     Y++HGL  +I+++I    G+     
Sbjct: 423 YAETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIP 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F   + ++  R +           E + F L +    T+ + Y+              
Sbjct: 483 DNFYSMVAKEAERTKE------EKGEELVDFELLKDLPDTRRLYYEDP------------ 524

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V  +++               V+ D T FY E GGQ  DTG  I
Sbjct: 525 --------FMKEFDAKVLRVIKD-------------WVILDATAFYPEGGGQPYDTGVLI 563

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G  +++T+VQK   G  + H + + G  +  M +   ID++ R Q   +H+ TH+L  
Sbjct: 564 VNGREVKVTNVQKV--GKVIIHKVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMG 621

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +T D  R D++H K I+  ELK IE   N I+ ++  V    + 
Sbjct: 622 ALVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWEWLP 681

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R  A       L   G      +RVV +E           CGGTH+ STG +  + I+  
Sbjct: 682 RTTAEQKYGFRLYQGGVVPGREIRVVKIE-----DWDVQACGGTHLPSTGLVGPIKILRT 736

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I+ G+ RI    G+ A      + + LK  ++ L+V    +    E  + E+++ +  
Sbjct: 737 ERIQDGVERIIFACGEAAIREWQKERDLLKKASNVLRVPPEKLPETAERFFNEWKEARKE 796

Query: 774 HAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L        +    KI  + F+  ++     ++L+ +++ L+K     +++L+
Sbjct: 797 VDKLKKELARLLVYELESKMQKIGSIEFIGEVVEG-SMEDLRELVEKLKK--PKRVVVLI 853

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLAR---LSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
                      + V  ++     A +LA+   L A   GGG    R  +AQ    + +KA
Sbjct: 854 SRDG----YFAVSVGSEV--GVEANELAKKITLIAGGGGGG----RRDIAQGKVKDISKA 903

Query: 886 DQAIAGVASF 895
              I  + S 
Sbjct: 904 KDVIESIKSM 913


>gi|194866940|ref|XP_001971973.1| GG15263 [Drosophila erecta]
 gi|190653756|gb|EDV50999.1| GG15263 [Drosophila erecta]
          Length = 1012

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 229/973 (23%), Positives = 406/973 (41%), Gaps = 123/973 (12%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           +     IR TFL+ F   +GH+ + SS ++P  DPT+ F N+GM  FK++F G     ++
Sbjct: 11  VLTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHK 70

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKCVR GGKHNDL  VG    HHTFFEMLGN+SFG YFK  A  +A +LL   ++
Sbjct: 71  RVANTQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYN 130

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           +D  RLY+T +  D+        E F++W+ + G  A +I+     DNFW M  TGPCGP
Sbjct: 131 IDPGRLYVTYFAGDKVLGIPADLECFEIWRSL-GFPASRILPFGCADNFWEMGATGPCGP 189

Query: 172 CSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           C+EI  D    +          +       E+WNLVF+Q+ +        LP   +DTGM
Sbjct: 190 CTEIHIDHRPDLGSVEQRAKLVNAGRCDLTELWNLVFIQYNRHADGSISRLPAHHVDTGM 249

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDH 278
           G ER+  VLQ K++NYD DLF  L    +Q         +            ++R++ DH
Sbjct: 250 GFERLTAVLQNKSSNYDTDLFTPLFDGIQQAAKTPAYSGSFPDAGSAALLDTSYRILADH 309

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338
            R  +  +ADG+LP    +   LRR++R+A+  +  +   + L+  L+P +   +G AYP
Sbjct: 310 ARMVTACLADGMLPDQNQK---LRRVLRKALNISEHVFGHDKLLTQLVPVVVETLGEAYP 366

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-------------------- 378
           E+   +  + + +  E E +    +        VL                         
Sbjct: 367 EMAAKQQAVIDLISHEQEVYKNLRESSSKAFAEVLMEFPNLDDIDLMECPGFVPAYREFQ 426

Query: 379 -------DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
                  +  + G+  +KL DT+GL  +    +     ++  D+  +   +   + +A++
Sbjct: 427 VQRGKFPNNTIPGEFLYKLTDTYGLTEESFLKLAELENMSC-DLERYRAEVSLAKIKAKS 485

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +  G+   +     ++    Q +    L  +    +      ++        + + 
Sbjct: 486 SQREIPGGSLCDLANE--QRIAEAQAMLTKRLAPTDNSHKYAYSFDKESNSYQIPPLKTR 543

Query: 492 VKAIVQQGEIVE-------EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---- 540
           V  ++     V        +  +   + +V   + FY E+GGQ  D G  +    +    
Sbjct: 544 VVGMLLNDAEVSRTQGSRIQQPTTDFISIVTAASSFYYESGGQQSDGGKILVRSHQQPAH 603

Query: 541 ---LQITDVQKKAEGIFVHHAIVERGI----LRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              L +  V K      VH   +        L     + L +D Q R+  + +H+ATHLL
Sbjct: 604 PHLLDVISV-KYLNDCVVHVCKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHLL 662

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           + A+ ++      Q  S +T    + ++    K I  ++++ IED +N +I    PV  +
Sbjct: 663 NAAIRSLFKKVTYQVSSSVTSGQCKLELGLLGKRIQKSDVQLIEDLINRVICSATPVQVQ 722

Query: 653 IMNREDAIASGAA-ALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           +++  + +       + G  Y ++  R+V+VE  +  + S  LC GTH ++T E+    I
Sbjct: 723 VLSAAEVLQQNDITMVPGEVYPEQGLRLVNVESPELQLSSKELCCGTHATNTSELSSFCI 782

Query: 711 VSESSIRAGIRRIEAITGQRARSH------LMGQDEKLKS---LASFLKVSQGNV----- 756
           V+            A+ GQ A +       L  + + L+           ++  +     
Sbjct: 783 VNLKQTNRARFAFTAVAGQAAENVLKTAALLRHRVDLLEKQFRTDKLTNATEAELQTIRH 842

Query: 757 -----------------VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FM- 797
                            + R+ E+ +  ++      K  + + +  L   K  D + F+ 
Sbjct: 843 NMLHTDIKLPYAFKMDTLERITEMLKRIKESSRTTLKEFVDVEMRTLLQEKPLDTHPFIL 902

Query: 798 -----SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
                S ++ E+        +    K  Q   ++++ +      +   V    + ++FNA
Sbjct: 903 HYITSSALVEEIP-------LQRATKLCQDRPVLVISVCDSVVKARCCVPVHRITEKFNA 955

Query: 853 VDLARLSAKVLGG 865
               +  A    G
Sbjct: 956 SAWLQSFADTFNG 968


>gi|14521870|ref|NP_127346.1| alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|13878785|sp|Q9UY36|SYA_PYRAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|5459090|emb|CAB50576.1| alaS alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
          Length = 914

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 215/971 (22%), Positives = 391/971 (40%), Gaps = 191/971 (19%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL+FF+K+    H  +    ++P     ++   + ++ F+     G+  P  
Sbjct: 58  TLDEMREKFLKFFEKHEVYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWIDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +    +                             T  +N W+    G  GP  
Sbjct: 174 FTKELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  R +E+  LVFMQ+++                    +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPEDQVVIIKGDRYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------- 271
             +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+           
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKRMAGVEKIDERILMENSRLAGMFD 303

Query: 272 ----------------------------------HRVIVDHLRSSSFLIADGILPANEGR 297
                                                I DH ++ +F++ADG++P+N   
Sbjct: 304 IEDMGDLKLLRKKVAEKVGISVEELEKAIRPYELIYAIADHTKALTFMLADGVIPSNVKA 363

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ R ++R+++ + + LG   P +  ++     E+   +PE  + + +I E +  E+++
Sbjct: 364 GYLARLLIRKSIRHLKELGLEVP-LSEIVALHIKELHKTFPEFKEMEDVILEIIDLEEKK 422

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + +TL RG  L+   ++ L K  +  +  +     Y++HGL  +++++I    G+     
Sbjct: 423 YSETLKRGSDLVRREIAKLKKKGMSEIPLEKLITFYESHGLTPELVKEIAEKEGIKVHVP 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F   + +                 E + F L +    T+ + Y+              
Sbjct: 483 DNFYSIVAK------EAEKEKEEKEEEVVDFELVKDLPETRTLYYEDP------------ 524

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V  ++                +V DQT FY E GGQ  DTG   
Sbjct: 525 --------FMKEFEARVLRVIGD-------------WIVLDQTAFYPEGGGQPYDTGVLF 563

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G  +++T+VQK   G  + H +   G+ +  M +   ID+  R Q   +H+ TH+L  
Sbjct: 564 VNGSEVKVTNVQKV--GKVIVHKVENPGLFKEGMEVRGRIDWDRRIQHMRHHTGTHVLMG 621

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +T D  R D++H K I+  EL+ IE   N I+ ++  V    + 
Sbjct: 622 ALVRVLGKHVWQAGSQLTTDWARLDISHYKRISDEELREIERLANRIVMEDRKVTWEWLP 681

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R +A       L   G      +RVV +E           CGGTH+ STG +  + I+  
Sbjct: 682 RTEAEQRYGFRLYQGGVVPGRVIRVVKIE-----DWDVQACGGTHLPSTGLVGPIKILRT 736

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I+ G+ RI    G+ A      + E LK  +  L+V    +    E  + E+++ +  
Sbjct: 737 ERIQDGVERIIFACGEAAIKEWQKEREILKKASQVLRVPPEKLPETAERFFNEWKEARKE 796

Query: 774 HAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L        +    K+ +  F+  I+      +L+  ++ L+K   + I++LV
Sbjct: 797 VEKLKKELAKLLVYELEAKVQKVKEYEFIGEIVEG-SMDDLREAVERLKK--PNRIVVLV 853

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARL---SAKVLGGGGGGGRPHMAQSGGPNGNKA 885
                K+    I V +++    NA DLA+     A   GGG    R  +AQ    + +KA
Sbjct: 854 S----KEGYFAISVGDNV--NLNANDLAKKLTSIAGGGGGG----RKDVAQGRIKDVSKA 903

Query: 886 DQAIAGVASFL 896
            +AI  +   L
Sbjct: 904 KEAIESIVKLL 914


>gi|322795678|gb|EFZ18357.1| hypothetical protein SINV_04921 [Solenopsis invicta]
          Length = 1018

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 225/822 (27%), Positives = 368/822 (44%), Gaps = 96/822 (11%)

Query: 4   VSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            + IR+ FL++F K+  H  + SS + P  D +L F N+GM  FK IF    KP      
Sbjct: 18  ANLIRSEFLDYFMKDLNHSFIRSSPVSPITDQSLAFINAGMNQFKGIFLDYYKPPVTKAV 77

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R GGKHNDL  VG    HHTFFEMLGN+SFG YFKE A   AW+LLT  +D+ +
Sbjct: 78  NSQKCIRVGGKHNDLSAVGNDGYHHTFFEMLGNWSFGDYFKEDACSYAWNLLTNVYDIPK 137

Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
             LY+T +  DE        E   +W K+ GL  +KI+     DNFW M  +GPCGPC+E
Sbjct: 138 EWLYVTYFGGDEKLGMSPDLECKDIWLKL-GLPENKILPFGMEDNFWEMGISGPCGPCTE 196

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I+ D  +         ++     +E+WN+VF+Q+E+        LP   +DTGMG ER+ 
Sbjct: 197 IYIDFTKQSANQAEQINKGYPNIMELWNIVFIQYERLANGYIVPLPNHHVDTGMGFERLV 256

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFL 285
           ++LQ K +NYD DLF+ L  A ++ +         G    G     +R++ DH R  +  
Sbjct: 257 SLLQGKKSNYDTDLFQPLFNAIQKRSNAPEYKGTFGDDDTGKIDYGYRILADHTRMITVA 316

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +AD +LP    +   LR+++R A+     +     ++  L+  +   +G AYPEL     
Sbjct: 317 LADHMLPEQHPK---LRKVLRNAIDVGEKVFKKPSIVSELVCNVADNLGVAYPELHTNLK 373

Query: 346 LIEETLRSED-----------ERFGKTLD-----------------RGLVLLDGVLSHLG 377
            ++  +  ED           + + K ++                  G   L  +L  L 
Sbjct: 374 QVQRIIDFEDDLLKRLRNTSGKMWSKIVETRPELTAITDSMAPGLVDGYKDLQSMLKELR 433

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           K  +L+G VAFKLYDT+GL  + + ++     L   D I F + L  ++ ++R       
Sbjct: 434 KTNVLSGTVAFKLYDTYGLNSETIAELAQIESLH-FDEIGFEEQLNNRKYQSRFGLGKHS 492

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +  T++    LK+ +         + +     K +               ++S +  I+ 
Sbjct: 493 TVITKESLGILKKNH---------VPKTDDSFKYNYTYDGNTYKFP---ALNSKLIGILL 540

Query: 498 QGEIVEEA-----------------------VSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
            GE+V                              ++ ++ D+T  Y+  GGQ+ D G  
Sbjct: 541 NGELVANKNDSNITKINNADHKITINIGKIQSDTDEIGIILDRTVCYSLEGGQVSDKGNI 600

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVER-------GILRTEMSLVLTIDYQNRRQLSINH 587
               +   + +V+K + G  +H     +         L+     ++ I+   R     +H
Sbjct: 601 CIKNLLFNVDNVRKVS-GYVIHSGHFTKTDLSISDLHLQIGDDCLVNIEPNIRIGAMKHH 659

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQN 646
           +ATHLL+ AL  I+   + Q G  +  D L+F      + +TS ++K+IE  +N+II  +
Sbjct: 660 TATHLLNAALKQIM-QVIYQRGCTVDMDSLKFQFNSFGEQLTSQQMKAIEVCINNIIQSH 718

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           +      +N  + +      L+  +      +  VE     + +   C GTHV +TG + 
Sbjct: 719 VATTVHTVNSLELLKQNDVTLVPGEIYPYTGIKIVEINTNDLKAKETCCGTHVHNTGVLQ 778

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               ++ +S  A  R I+A+ G  A       +   + LA  
Sbjct: 779 HFCFLTYTSKGATKRTIKAVVGPEALRSKQAGERICQRLAEI 820


>gi|157119081|ref|XP_001659327.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108875478|gb|EAT39703.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 1012

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/871 (26%), Positives = 391/871 (44%), Gaps = 82/871 (9%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +   IR  F+++F Q+N H L+ SSS++P +DPT+ F N+GM  FKN+F G  +      
Sbjct: 34  SSKQIRQQFVDYFVQENEHRLVRSSSVVPFSDPTIAFVNAGMNQFKNVFLGTAEAPCPRA 93

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+R GGKHND+  VG    HHTFFEMLG++SFG YFK  A Q+AW LLT+ + +D
Sbjct: 94  VNSQKCIRVGGKHNDVSVVGSDGYHHTFFEMLGSWSFGDYFKREACQMAWRLLTEVYGID 153

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            RRLY++ +  DE        E   +W  + G+  ++II     DNFW M  +GPCGPC+
Sbjct: 154 PRRLYVSYFGGDEAMGLPADLECRDVWAGL-GIPPERIIPFGARDNFWEMGNSGPCGPCT 212

Query: 174 EIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMG 229
           EI  D  +      G     +       E+WN+VF+Q+ +         LP+  +DTG+G
Sbjct: 213 EIHIDHSDRFLDTEGRKHLVNAGVPDLTEVWNIVFIQYNRNLEDGRINDLPQRHVDTGLG 272

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG---------NNIVNHRVIVDHL 279
           LER+   LQ K +NYD DLF  +    ++VT    Y+G              +R++ DH 
Sbjct: 273 LERLVAHLQNKNSNYDTDLFVPIFDRIQKVTKKDGYQGIFDSTDPRCPLDTAYRIVADHT 332

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  ++DG+ P+     + LRRI+RR++  +  +  +  L+  L+P +   +G  YPE
Sbjct: 333 RMITACLSDGMFPSQN---HKLRRILRRSLSLSERVFSSPSLLQELIPVVVGILGDTYPE 389

Query: 340 LIQAKLLIEETLRSEDERFGK------------------------TLDRGLVLLDGVLSH 375
           + +     ++ +  E++ + +                        T   GL      +  
Sbjct: 390 MHKKLQQTQQIILHEEQSYQQLRSNLSSDSRALLKEYSYFDEAEVTDHPGLPYALKEIKR 449

Query: 376 LGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L   +   +L+G++  K+YDT+GL  D++  I     L  +DI  +N   +  +  A+  
Sbjct: 450 LKAKQGLRLLDGEMIHKMYDTYGLDEDLLVKIGEFEHLE-LDIKGYNSYSKLIKEGAK-- 506

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
            L L +   E +  S     G  Q          K+     K         L   ++SIV
Sbjct: 507 -LELAARLQESLNTSQGLSQGLNQKQQCPTRNEYKYNYTYNKDKRLYEIPKLKTKITSIV 565

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA---IGDGIRLQITDVQKK 549
            A    GE            V+ +++ FY E+GGQ  D G            ++  V + 
Sbjct: 566 TA---DGE------ENALCHVITEKSNFYFESGGQQSDRGSLALATDPTTPFRVKSVGEH 616

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              +           L     ++LT+D   R    ++H+ATHLL+ A  ++L   + Q  
Sbjct: 617 QGFVIHSVDRRAAEKLSVGDEVILTVDPIIRSSNIVHHTATHLLNAAARSVLAVPMCQRS 676

Query: 610 SCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           S +   GL+ ++      I   E+ ++E  +   I QN PV  R+ N  +        + 
Sbjct: 677 SYVGDKGLKLELAVCGAKIGPDEVDAMEQQIRQCIRQNEPVRVRVCNASEVDLDKVTMIP 736

Query: 669 GTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           G  Y ++  R+V +    G   S+  C GTH  STG++    I + S  ++G     AI 
Sbjct: 737 GEVYPEKGLRLVEI----GQSTSTEFCCGTHAQSTGQLQDFCITNVSQSKSGCYTFFAIA 792

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHAKRKLQLNV 783
           GQ A        +    +   LK      + R    +E   +  + + L+ ++  + L  
Sbjct: 793 GQAAIKAHQLGAQIQNDV-GQLKHDMDQQLSRDMTSLEARMQRLKNVLLVGSENNINL-P 850

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
             +    +  +N +   + +   + L+ ++D
Sbjct: 851 HAIRQRCLDVINELYRRLKDHTRESLRELID 881


>gi|307176881|gb|EFN66222.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 1005

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/960 (25%), Positives = 404/960 (42%), Gaps = 115/960 (11%)

Query: 2   SNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + + IR  FL++F  +  H ++ SS + P  D +L F N+GM  FK IF    +P    
Sbjct: 17  KSANLIRKEFLDYFSNDLKHSIIRSSPVSPIADQSLAFINAGMNQFKGIFLDYHEPPAAK 76

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+R GGKHNDL  VG  + HHTFFEMLGN+SFG YFKE A   AW+LLT  + +
Sbjct: 77  VVNSQKCIRVGGKHNDLSVVGNDSYHHTFFEMLGNWSFGDYFKEDACTYAWNLLTNIYGI 136

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            +  LY+T +  +E        E   +W ++ GL   K++     DNFW M  +GPCGPC
Sbjct: 137 PEECLYVTYFGGNEKLGMAPDLECKNIWLRL-GLPECKVLPFGMRDNFWEMGLSGPCGPC 195

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI  D            ++     +E+WN+VF+Q+E+        L K  +DTGMG ER
Sbjct: 196 TEIHVDFMRRNTNQAARVNKGYADLMELWNIVFIQYERLANGSIVPLSKHHVDTGMGFER 255

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSSS 283
           + T LQ K +NYD DLF+ L  A ++ +    Y+G    +        +R++ DH R  +
Sbjct: 256 LVTFLQGKKSNYDTDLFQPLFDAIQKHSNAPNYKGTFDNDDTGKLDYGYRILADHTRMVT 315

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343
             +AD +LP  + +   LRRI+R A+     + +   ++  L   +   + +AYPEL   
Sbjct: 316 VALADNMLPEEQKK---LRRILRNAINVGEKIFHKSGIVTELAYTVADNLDAAYPELHNN 372

Query: 344 KLLIEETLRSEDERFGKTLD----------------------------RGLVLLDGVLSH 375
              ++  +  E++ F +  +                             G   L  +L  
Sbjct: 373 LKQVQRIIDFEEDLFKRLRNTSGKKWSKMIEIRPELASITDWMAPGLVDGYKELQSMLKE 432

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
           L K  IL+G VAFKLYDT+GL  + + ++     L   D I F + L+  R +++     
Sbjct: 433 LRKTNILSGTVAFKLYDTYGLNSETIAELAEIESLH-FDEIDFEKQLDNHRYQSKIGLDK 491

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
               T E +    K+    T                 +              ++S +  I
Sbjct: 492 NSILTKESLEILEKDHVPKTN-------------DSFKYNYTYNGNNYEFPALNSKLIGI 538

Query: 496 VQQGEIV-----------EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
           +  GE+V           E   S  ++ ++ D+T  Y+  GGQ+ D G      +   I 
Sbjct: 539 IINGELVINKTRKTINVKEIYNSTDEIGIILDKTVCYSSEGGQVSDIGNISIKNLFFNID 598

Query: 545 DVQKKAEGIFVHHAIVER-------GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           +V K   G  +H     +         L+     ++ I+   R     +H+ATHLL+ AL
Sbjct: 599 NVIK-INGYVIHSGYFAKIDLPTSELYLQIGDDCLVNIEPNIRIGAMKHHTATHLLNAAL 657

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
             ++   V Q+ S +  D L+F      + +T  +++ IE  +N+II     +    +N 
Sbjct: 658 KQVM-QVVYQSSSTVNADNLKFQFNSFGEQLTLDQMRIIEHCINNIIQTRAAITVETLNL 716

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            + +      L+  +      +  +E     + S   C GTHV +T  +     ++ +S 
Sbjct: 717 LELLKQDDITLIPGEIYPYTGIKVIEINANNLKSKETCCGTHVHNTSVLQHFCFLTYTSK 776

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASF---LKVSQ---GNVVGRVEEIWEEYRK- 769
               R ++AI GQ A       +   + +A     LK ++         +  I +E    
Sbjct: 777 GTTKRTVKAIVGQEALRMKQAGERISQRIAELEETLKSNKFTYEQFQEEINRIKQEINDP 836

Query: 770 -------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQK-- 818
                  L        L+   + +   +  +    + II E+ +       ++  L K  
Sbjct: 837 NIQTLPYLIKEKCLTSLENLNKAIWLQEKENEK--ASIIREITNTLDSSCFIVHCLNKNP 894

Query: 819 ---------KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868
                       S + +LV     +       V ++++ + FNA     +  ++  G  G
Sbjct: 895 TYLSLHEVISPFSKVPILVLSITNRSVKARCSVPQEIVSKAFNAQTWMDVILQIFNGKQG 954


>gi|300121459|emb|CBK21978.2| Alanyl-tRNA synthetase [Blastocystis hominis]
          Length = 877

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/832 (28%), Positives = 389/832 (46%), Gaps = 66/832 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R  FL++F    H ++P SS+IP +DP+L+F N+GM  FK  + GQ  P  + VT
Sbjct: 27  TAKELRDQFLQYFASKNHTIVPGSSVIPKDDPSLLFVNAGMNQFKKYYLGQAVPEVRRVT 86

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T Q C+RAGGKHNDLDN+G T RH T FEMLGNFS G Y+K+ AI +A++ ++K   +  
Sbjct: 87  TSQLCIRAGGKHNDLDNIGFTPRHQTMFEMLGNFSLGDYYKDEAISMAYEFVSKVLQIPN 146

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG-PCGPCSEIFFDQGE 181
             L ++++++D+ A  +WK I+G    +I+     DN WSM  +  P G CSE+FF    
Sbjct: 147 SHLRVSIHEKDDSARSIWKSIAGFQDSQIVSRGNKDNLWSMGSSDSPSGFCSELFFTT-- 204

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM--SIDTGMGLERMATVLQE 239
                 P S+ +   ++EIWNLVFM  + + +   F L      IDTGMG ERM +VL  
Sbjct: 205 -----DPFSTYDN--WLEIWNLVFMNTQSKVRSLFFSLILKGGWIDTGMGCERMLSVLNG 257

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +N++ D+F  ++ + +     ++   +  +  +  DHLR+ S ++A+ I+P+++GRGY
Sbjct: 258 VPSNFETDVFTGILSSIQ----ARFPSLSSSHAHIFADHLRT-SVVLANEIVPSSKGRGY 312

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           VLR+I RR + +A L     P +  L+PA+   + +  PEL   +  IE  L  E+E F 
Sbjct: 313 VLRKIFRRMLRFAYLNHIDYPFVSELIPAVIQALHAQLPELAGNQEKIERILGMEEEFFW 372

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           + +  G  L   V S   K     G+   +L    GLPLD+++ +   + +  ++  + +
Sbjct: 373 RAVAEGKKL---VASKAKKVGFFGGETLRQLRADTGLPLDMVETLFQEKKIT-VESEASD 428

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
           Q L+E+    R   +          W    E   + +F G             + V  +K
Sbjct: 429 QLLQEEMENERMAQVEK--------WGIPPESQWSGRFAG-------------QTVEMEK 467

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                +    + ++AI +         SG    VV D+ PF+    GQ GD G  + +G 
Sbjct: 468 LTSLSSVSQKAKIQAISK---------SGNVEFVVLDRCPFFPTQAGQEGDRGVVVWNGR 518

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + + D  K  + I     ++    L     +   ID ++R+ ++ +HSATHLLH  L  
Sbjct: 519 EIGVMDTIKHGQTIIN---VLPASNLPLNSEVECVIDLRHRQAVARHHSATHLLHACLGE 575

Query: 600 ILGSHVS-QNGSCITPDGLRFDV-----THSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           + G H S Q GS IT     FD      T       A ++ +E  +N      +PV    
Sbjct: 576 LSGVHQSLQAGSHITEKEFSFDFYTGFLTPLLKSPQAFIELVESKMNAAARAEIPVKRVD 635

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
              +D         +G   +             G  S   C G HV+++G++  + I   
Sbjct: 636 FTAKDLETVPKGTFIGDISHISQSENVFHTISIGNLSREFCCGQHVANSGDLFPVVISGV 695

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            SI AGI+RI    G  A   L  Q   L  L      S+  +V + E +  + + L+  
Sbjct: 696 QSISAGIKRITGKAGMAASEVLFEQHRTLNQLLGSFACSEKEIVKKAEGLQSQVKSLEQT 755

Query: 774 HAKRKLQLNVEDLSCHKI------ADVNFMSHIISEVDSKELKSVMDALQKK 819
            A             +++      +     S  + E+ ++  K ++D L  K
Sbjct: 756 KAALLRFAAASMAPTYEVHCSSNSSSSTLRSLQVFEIPAEIPKEIIDKLMDK 807


>gi|17536681|ref|NP_496444.1| Alanyl tRNA Synthetase family member (ars-1) [Caenorhabditis
           elegans]
 gi|74966572|sp|Q23122|SYAM_CAEEL RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName:
           Full=AlaRS B; AltName: Full=Alanine--tRNA ligase; Flags:
           Precursor
 gi|6176436|gb|AAF05590.1|AF188715_1 alanyl-tRNA synthetase [Caenorhabditis elegans]
 gi|14530594|emb|CAA91396.2| C. elegans protein W02B12.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 793

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/770 (30%), Positives = 371/770 (48%), Gaps = 61/770 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + S +R +F EFF+   HE+L SSS+IP  ND TL+FTN+GM  FK +     +   + V
Sbjct: 23  SHSELRKSFYEFFKSKNHEILRSSSVIPDENDGTLLFTNAGMNQFKPLILSSTE--SRRV 80

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-KERAIQLAWDLLTKEFDL 120
             +QKC+RAGGKHNDLD+VG+   H TFFEM+GN+SF   F KE A + AW+ L +   +
Sbjct: 81  ANIQKCIRAGGKHNDLDDVGKDLHHQTFFEMMGNWSFNDAFSKEEACRYAWEYLVEILGI 140

Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           +  RLY++ +         ED E  ++WK+I G+S+++I+     +NFW M   GPCGPC
Sbjct: 141 NADRLYVSYFGGIEKLGLPEDRECREIWKRI-GVSSNRILPF-VAENFWEMGAAGPCGPC 198

Query: 173 SEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           +EI +D+     GG   S      +  +EIWN+VFM   + +  +   L K  IDTGMG 
Sbjct: 199 TEIHYDR----IGGRDASRLVNIDDSVVEIWNIVFMSSVRDSCGQIRHLGKNHIDTGMGF 254

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLI 286
           ER+ +V+Q KT+N+D D+F  +++ + ++   +Y G+         R++ DH+R+++  I
Sbjct: 255 ERLLSVVQNKTSNFDTDVFTPILEKTSELAKKQYTGSLDSRQDATFRLVADHIRAATVAI 314

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           +DG +P   G G+++R++MRRA       LG     M  L+P + + M   YPE+     
Sbjct: 315 SDGAVPDGTGCGFIVRKMMRRAFLQGISKLGIERYAMSELVPVVASTMKEVYPEIHDTST 374

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405
            I +    E+ +F KT+D+   + D V +   K  I++G  AF L++THGLPL +  ++ 
Sbjct: 375 HIRKIFNDEEAQFWKTVDKAKKMFDSVAAE-SKSPIISGRKAFNLFETHGLPLAVTVELA 433

Query: 406 CARGLAGIDIISFNQA-LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              G   +D   F +  LE Q+   +A    L     +    S KEKY            
Sbjct: 434 RNIG-REVDETEFERCRLEAQKVSQKASQFKLPISADDFPSHSDKEKYS----------- 481

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
                         +        V + +  + +  +  E   +  +  +V ++  FY E 
Sbjct: 482 -----------YVFRNGKYEFPQVKTRILQVYKDQQKAESLEANDRGFLVLEECQFYGEQ 530

Query: 525 GGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           GGQ  DTG  + DG    ++ + +K A G            +R ++ +   +D   R  +
Sbjct: 531 GGQTSDTGHLLIDGREVFEVENAKKIAGGAVTVLFGRALLPIRRDLRVEQKLDETRREGV 590

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----THSKPITSAELKSIEDN 638
              HSATHLL+ AL  + G    Q GS +  D  RFD        SK   +  L   E  
Sbjct: 591 MRAHSATHLLNWALQKL-GVGSGQKGSSVDCDRFRFDYSTGDEDLSKEQRTELLIKCEMK 649

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + + I           + E+A       + +         V  V    G       C GT
Sbjct: 650 MREFIQNGGFTEIIETSLEEAKKIENLQSDVKEDRIGGASVRVVALGSGADVPVECCSGT 709

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---RSHLMGQDEKLKS 744
           H+     I  + I+S+ S+   +RRI  +TG+ A   R++     E L+S
Sbjct: 710 HIHDVRVIDDVAIMSDKSMGQRLRRIIVLTGKEAAACRNYTKSIYEDLRS 759


>gi|15679677|ref|NP_276794.1| alanyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3334347|sp|O27718|SYA_METTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2622813|gb|AAB86155.1| alanyl-tRNA synthetase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 898

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/953 (25%), Positives = 389/953 (40%), Gaps = 173/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  I+  F+EFF + GHE +    ++       +    + +  F+   T G  KP    
Sbjct: 55  DLYEIQDKFMEFFAERGHEPIRRYPVLAKRWRDDVFLVGASIYNFQPWVTSGLVKPPANP 114

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M G+ +F       Y++E  I+   D LT
Sbjct: 115 LVVAQPSIRL----NDVDNVGRTGRHLTCFTMGGHHAFNSEDNTVYWEEETIKYCHDFLT 170

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                        G+   +I   T  +++W        GPC E+
Sbjct: 171 ---------------------------HIGIDPSEI---TFIESWWQGGGNE--GPCYEV 198

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVF+Q+       R  +P   +DTG GLER A 
Sbjct: 199 ------------------CVRGVELATLVFIQYRTLPDGGREEIPLKIVDTGYGLERFAW 240

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK--------------------YEGNNIVNHRV- 274
           + Q     YD  L   +I+   ++TG+K                    Y     +  RV 
Sbjct: 241 ISQGTPTAYDACL-GPVIEKLVELTGVKIDEEILAENAQVAGMMDIETYADLRELRKRVA 299

Query: 275 ----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                 I DH R  +F++ADG++P+N   GY+ R I+RR +   
Sbjct: 300 DKLGISVEELERAAAPMESVYAIADHTRCLAFMLADGVIPSNVKEGYLARLIIRRTLRLM 359

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + LG  E  +  ++      +   YPE+      I   +  E+ R+ +T+ RG  +++  
Sbjct: 360 KDLGMKES-LKDIMNIQVEFLEGHYPEIRSHHEHILNIIDLEEHRYARTVKRGRRIVEKT 418

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           + +L +D    +  ++  KLYD+HG+P + + +I    G       +F   + E+     
Sbjct: 419 IKYLKRDGKAEMPLEILIKLYDSHGIPPETIGEIAEESGFQVKIPDNFYTLVAER----- 473

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                     TE     +   Y AT+ + YD     +F  E                   
Sbjct: 474 ------NETETEMPEEDVHLDYPATELLFYDEPDDLEFQAE------------------- 508

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            V  I + G             ++ D+T FY E GGQ  DTG    +G RL+I   +K  
Sbjct: 509 -VIGIHENG-------------LILDRTLFYPEGGGQPSDTGYITAEGCRLRIKHAEKI- 553

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G  V H   +   +    ++   ID   R QL+ NH+ATHL+  A   +LG H+ Q G+
Sbjct: 554 -GAVVVHRTDDEICIEPGTTIRGFIDSDRRLQLTRNHTATHLIVSAARKVLGDHIWQAGA 612

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
                  R D++H + IT  EL+ IE   N+ +  N+P+  R M+R+ A       L   
Sbjct: 613 QKGVKSSRLDLSHYRRITLEELQEIERLANEYVMMNVPLKVRWMDRDLAERKYGFILYQG 672

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G     R+RVV +   D        C GTHV  TG+I L+ I     I+ G+ RIE   G
Sbjct: 673 GVVPGSRIRVVEIPGVD-----VQACAGTHVHRTGDIGLIRINRTERIQDGVERIEFSAG 727

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
             A   +    + L+  +   KV+   + G  E  + E++ L  ++   K K+       
Sbjct: 728 SAAIEIMQKTGDILRESSDIFKVTPSQLPGTCERFFTEWKALRNEVSRLKEKVASLKILE 787

Query: 787 SCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
              +   +N ++ II   + D  E+K++   L       +  +V  + E K  ++   +E
Sbjct: 788 MKDRAERINDLTVIIDTVDADMDEMKNMALELSAT----VDAVVLANPEGK--IVGAASE 841

Query: 845 DLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           D +       ++   +A VLGGGGG GRPH+AQ  GP  +K D+A+    + L
Sbjct: 842 DAVKAGLRINEVISQAAAVLGGGGG-GRPHLAQGAGPATDKVDEALEEARAAL 893


>gi|167462223|ref|ZP_02327312.1| alanyl-tRNA synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 572

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 204/604 (33%), Positives = 331/604 (54%), Gaps = 41/604 (6%)

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           R++RRA+ Y ++LG  +P M  L+PALC  MG  Y E+++ +  IE+ +R+E+ERF +TL
Sbjct: 1   RLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKIIRTEEERFHETL 60

Query: 363 DRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
             GL +L  +++   K  +  + G  AFKLYDT+G P+D+ +D    +G+  +D   F  
Sbjct: 61  SDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQGMT-VDKEGFEA 119

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
           +++EQR RARA      S   +     L +    ++F+GY+ L                 
Sbjct: 120 SMQEQRERARAARQDTDSMNVQG--GPLADFTDKSEFVGYNDL----------------- 160

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                  V + + A++    +V+    G+  +VV D+TPFYAE+GGQ+ D G        
Sbjct: 161 ------VVPAKIIALMHNNTMVDIVNEGEICQVVLDRTPFYAESGGQVSDKGTIRYGETL 214

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++ +V K   G  VH  +VE+G  R       ++D   R  +  NH+ATHLLH AL+ +
Sbjct: 215 LRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHTATHLLHKALNEV 274

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV+Q GS +    LRFD +H   IT  EL+ +E  VN+ I QN+PV+ ++M  ++A 
Sbjct: 275 LGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIPVIIKLMPIDEAK 334

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A GA AL G KY        V     G +S  LCGG HV++T EI    IVSES I +G+
Sbjct: 335 AMGAMALFGEKYG-----KVVRVVRVGDYSLELCGGCHVANTAEIGQFKIVSESGIGSGV 389

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778
           RRIEA+ G+ A +++  Q   LK  A  LK    +V  RV+ I  + ++L  ++   + K
Sbjct: 390 RRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMKELNREIESLRSK 449

Query: 779 L---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           L   +         ++  +  ++  ++  D   L+ + D ++ +I SG+I+L G +  +K
Sbjct: 450 LSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSGVIVL-GAASGQK 508

Query: 836 ASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +++  VT+DL  +  +A  + + +A + GGGGG GRP MAQ+GG + +K  +A+  V +
Sbjct: 509 VNLVAAVTQDLTKKGLHAGQIVKAAASICGGGGG-GRPDMAQAGGKDPSKLKEALLYVET 567

Query: 895 FLKK 898
           ++++
Sbjct: 568 YIQQ 571


>gi|315231477|ref|YP_004071913.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184505|gb|ADT84690.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 911

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 205/969 (21%), Positives = 389/969 (40%), Gaps = 192/969 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  FL FF+++GH  +    ++P     ++   + ++ F+     G+  P    +
Sbjct: 58  TLEEMREAFLSFFERHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +  +    +                             T  +N W+    G  GP  E+ 
Sbjct: 174 DLKMKPEDI-----------------------------TFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE------------RFILPKMSI 224
           +                  R +E+  LVFMQ++                     +    +
Sbjct: 203 Y------------------RGLEVATLVFMQYKLAPPGTPDDQVVIIKGDRYVPMDTKVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------- 271
           DTG GLER+  + Q     YD  +  ++++  +++ G++   + I+              
Sbjct: 245 DTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKRMAGIEKIDDRILMENSRLAGMFDIED 303

Query: 272 -------------------------------HRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLKVLRREVAGRVGISVEELERLIRPYELIYAIADHTKALTFMLADGVVPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   P +  ++      +   +PE  + + +I + +  E++R+ +
Sbjct: 364 ARLLIRKSIRHLRELGLQIP-LSEIVAMHIKALHKTFPEFKEMEDVILDIVNVEEKRYQE 422

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL RG  L+   +  L K+    +  +     Y++HGL  +I+++I    G+      +F
Sbjct: 423 TLKRGSDLVRREIKKLRKEGKDEIPLEKLILFYESHGLTPEIVKEIAEKEGIKVHIPDNF 482

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + ++     A  +       + + F L      T+ + Y+                 
Sbjct: 483 YSLVAKE-----AEKMAKEEKEEKIVDFELVRDLPDTRTLYYEDP--------------- 522

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      + V  ++                VV D+T FY E GGQ  DTG   G  
Sbjct: 523 -----FMKEFDAKVLKVIDD-------------WVVLDKTAFYPEGGGQPYDTGELNG-- 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ +VQK   G  + H + + G  +  M++   ID++ R Q   +H+ TH+L  AL 
Sbjct: 563 --VEVLEVQKV--GKVILHRVKDPGKFKEGMTVHGKIDWERRIQHMRHHTGTHVLMGALV 618

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS ++ +  R D++H K I+  ELK IE   N I+ ++  V    + R +
Sbjct: 619 RVLGKHVWQAGSQLSTEWARLDISHYKRISEEELKEIERLANRIVMEDRKVAWEWLPRTE 678

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +R++++E           CGGTH+ STG I  + I+    I
Sbjct: 679 AEQKYGFRLYQGGVVPGRIIRILNIE-----DWDVQACGGTHLPSTGLIGPIKILRTERI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RI    G+ A      + + +K  +   +V    +    E+ +EE+++ +    K
Sbjct: 734 QDGVERIIFACGEAAIKEWQRERDIIKKTSEVFRVPPEKLPETAEKFFEEWKQARKEVEK 793

Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            K +L    +        KI ++ F+  ++   D   L+     L+ K    +  L+   
Sbjct: 794 LKKELAKLLVYELENKVEKIGEIEFIGEVVEG-DLDHLREAA--LKLKKPKRVTALIS-- 848

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV----LGGGGGGGRPHMAQSGGPNGNKADQ 887
            E   +V++ V +++   F A +L R+   +     GG        +AQ    +  KA +
Sbjct: 849 -EDTNAVVVAVGDEVP--FKAGELIRIITSIAGGGGGGKK-----DLAQGKIKDVRKARE 900

Query: 888 AIAGVASFL 896
           A+  +   L
Sbjct: 901 ALEELRKRL 909


>gi|170047897|ref|XP_001851441.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167870139|gb|EDS33522.1| alanyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 1007

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/955 (25%), Positives = 411/955 (43%), Gaps = 120/955 (12%)

Query: 3   NVSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + IR  FL+FF + +GH ++ SS ++P +DPT+ F N+GM  FK++F G+ +   +  
Sbjct: 36  SSAEIRRRFLDFFVRDHGHRVVRSSPVVPFSDPTIAFVNAGMNQFKSVFLGEREAPCRRA 95

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKCVR GGKHND+  VG    HHTFFEMLGN+SFG YFK  A ++A  LL   + +D
Sbjct: 96  VNSQKCVRVGGKHNDIGVVGTDGYHHTFFEMLGNWSFGDYFKREACEMALSLLKDVYRID 155

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            RR+Y+T +  D         E  ++W  + G+  ++I+     DNFW M  +GPCGPC+
Sbjct: 156 ARRMYVTYFGGDAAMGLPADLECREIWASL-GIPEERILPFGARDNFWEMGSSGPCGPCT 214

Query: 174 EIFFDQGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFILPKMSIDTGMG 229
           EI  D  +            +       E+WN+VF+Q+ +         LP+  +DTG+G
Sbjct: 215 EIHIDHSDQFGNVAERSRYVNAGLPDLTEVWNVVFIQYNRGLGDGRITDLPQRHVDTGLG 274

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG---------NNIVNHRVIVDHL 279
           LER+   LQ+K +NYD DLF  L +  EQ++   KY+G              +R++ DH 
Sbjct: 275 LERLVAHLQQKNSNYDTDLFVPLFERMEQISRKDKYQGVFDARHRNYELDTAYRIVADHT 334

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  ++DG+ P+     + LRRI+RR +  +     +  L+  L+P +   +G  YPE
Sbjct: 335 RMITACLSDGMFPSQS---HKLRRILRRTLSLSERTFGSPHLLRELVPVVVEILGETYPE 391

Query: 340 LIQAKLLIEETLRSEDERFGKTLDR------------------------GLVLLDGVLSH 375
           + +        +R E+E + +                            GL      +  
Sbjct: 392 MDKKLTESLAIIRHEEECYRQLRSALTSESRDLLKRNPWIDESELIDHPGLPHALKEIRK 451

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
           L     L+G    K+YDT+GL  D+++ I     L  +D+  +              S  
Sbjct: 452 LNGANKLDGTFIHKMYDTYGLDEDLLEKIANFERLE-LDLAGYETF-----------SKQ 499

Query: 436 LGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
           L  G   ++   L++  G + + +       ++ + +   V            + + + +
Sbjct: 500 LKQGAKLELANQLQQSLGRSRELLSSTQAGPTRNVYKYNYVYNGDKQTYDVPQLKTKITS 559

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAE 551
           I      V+ A SG    V+ + + FY EAGGQ  DTG         ++ ++  V +  +
Sbjct: 560 I------VKSATSG--CHVITEASNFYFEAGGQQSDTGRIWLAADPAVQFEVKSVGE-CQ 610

Query: 552 GIFVHHAI--VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           G  +H        G++     +VL +D   R    I+H+ATHLL+ A   +LG  + Q  
Sbjct: 611 GYVIHSVEDGAATGLISVGDEVVLAVDAARRTSNIIHHTATHLLNAATRKVLGVPMCQRS 670

Query: 610 SCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           S +   GLR ++      +   E+ +IE  V   I QN PV  R+ N  D   +    + 
Sbjct: 671 SVVGDKGLRLELAVCGAKVGPDEVDAIETIVRQSIRQNEPVRIRVCNASDVDLNKVTTIP 730

Query: 669 GTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           G  Y +R  R+V +    G   S+  C GTH   T E+    I + +  + G     AI 
Sbjct: 731 GEIYPERGLRLVDI----GASTSTEFCCGTHAQQTAELQDFCITNLAQSKPGCFTFHAIA 786

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI-------------H 774
           G+ A        +    +           +  V  +    ++L+ +              
Sbjct: 787 GEPAVKAHQLSAQIGNDVRQLKHDMDQQTISDVPNMDARMQRLKNVLLVGSENNITLPFA 846

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS---------VMDALQKKIQSGII 825
            +++    + DL              + +++ K L+          ++  L+  I    +
Sbjct: 847 ERQRCLDIINDLFKRLKDHTRESLRELIDIEMKNLQQERPLSAHPFLVHFLESSIIMEEV 906

Query: 826 MLVGISK--EKKASVLIVVTEDLLD------------RFNAVDLARLSAKVLGGG 866
            L   ++    +  ++I +T+DL+             +F+A    +L   V   G
Sbjct: 907 QLSKATRYFPDRPVLVISITDDLVKARACVPAAFQTTQFDAQQWLKLVGGVFKAG 961


>gi|298500953|ref|ZP_07010754.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Vibrio cholerae MAK
           757]
 gi|297540201|gb|EFH76261.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Vibrio cholerae MAK
           757]
          Length = 551

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 218/595 (36%), Positives = 325/595 (54%), Gaps = 48/595 (8%)

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +   LG        L+  L   MG+A  EL + + L+E+ LR E+E FG+TLD
Sbjct: 3   IIRRAVGHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRIEEENFGRTLD 62

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           RG+ +L+  L  L   ++L+G+  FKLYDT+G P D+  D+   RG + ID   F QA+E
Sbjct: 63  RGMSILNDALDQLS-GQVLDGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAME 120

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQR RAR        G     + SL +    T+F GY   RG                  
Sbjct: 121 EQRQRAREA------GQFGTDYNSLIKSATNTEFCGYTASRG------------------ 156

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 S+V+ +  +G  V    +G K  +V D TPFYAE+GGQ GDTG    D     +
Sbjct: 157 -----QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHV 211

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK    I  HH ++ +G+L T   +   +D + R  +S+NHSATHLLH AL  +LG 
Sbjct: 212 EDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGE 270

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV+Q GS +  + LRFD +H + +T+AE+K +E  VN  + +N  + T IMN ++A A G
Sbjct: 271 HVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNIMNIDEAKAKG 330

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+D+VRV+S+     G  S+ LCGG H S+TG+I L  I+SE  I AGIRRI
Sbjct: 331 AMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRI 385

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA+TG+ A  +L  Q        +        +  + + + +E ++L+   A ++    +
Sbjct: 386 EAVTGEGALDYLDAQQ-------AQHDAKVSEMAAKAKLLEKEIQQLKDKLAAKESAGLI 438

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                 +IA VN +   ++  D+K L+ ++D L+ ++ SGIIML G   E K  ++  VT
Sbjct: 439 N--QVKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIML-GNVAEGKVGLIAGVT 495

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            DL ++  A +L  + A  + GG GGGRP MAQ+GG + +    A+  V +++ +
Sbjct: 496 NDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSALESVDAWIAE 549


>gi|20089092|ref|NP_615167.1| alanyl-tRNA synthetase [Methanosarcina acetivorans C2A]
 gi|22096190|sp|Q8TU79|SYA_METAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|19913955|gb|AAM03647.1| alanyl-tRNA synthetase [Methanosarcina acetivorans C2A]
          Length = 925

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/968 (23%), Positives = 383/968 (39%), Gaps = 178/968 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+S +R  +L FF+  GH  L    ++      +  T + +  F+   T GQ  P    +
Sbjct: 59  NISEMREYYLSFFEARGHTRLDRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE  ++L  +LLT 
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTNFEMMAHHAFNKRGNEIYWKEHTLELCDELLTS 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D                                +T  +  W+    G  GPC E+ 
Sbjct: 175 -LKVDP-----------------------------FAVTYKEEPWAGG--GNAGPCVEVI 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-------ERFILPKMSIDTGMG 229
                                +E+  LVFM  +   K            +    +DTG G
Sbjct: 203 V------------------HGLELATLVFMDLKTDKKGDILIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------------------- 268
           LER     +     YD  LF  ++     + G+++E NN                     
Sbjct: 245 LERFVWASKGSPTIYDA-LFPGIVNELMGLAGLEHELNNTEYSNILAQNARLAGFMDVSE 303

Query: 269 ----------------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                       +     I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 KANLLELRKKVASSIGMTVDKLSVIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +   + L    P +  ++      M   YPE      +I++ L SE+E+F  
Sbjct: 364 ARLVLRRTLRMMKDLDIRTP-LSEIVDMHIRNM-PEYPEFRANFPVIQDILESEEEKFNI 421

Query: 361 TLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           T++RG  ++    SH  K  E +      +LYD+HG+P ++ +++    G+      +F 
Sbjct: 422 TMERGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVAADIGVGVEFPDNFY 481

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + E  ++A      +        +    +    T+   YD     +F           
Sbjct: 482 SIIGELHNKAEEKEEEV------IPFAERLKHLPKTKRRFYDEPTRLEF----------- 524

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V  +                 +V D T FYAE GGQ  D G      I
Sbjct: 525 ---------EAVVLDVFDN-------------HIVLDNTFFYAEGGGQPADIGTISVGDI 562

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRT--EMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             ++ DVQ   EG+ VH   +  G L       +   +D + R  L+ +H+ATH+++ A 
Sbjct: 563 VYKVVDVQ-VYEGVIVHTVDIPDGELEITKGDIITGKVDERRRMTLARHHTATHIVNDAA 621

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG H+ Q G+    D  R D++H K I+  ELK IE   N  + +N  V+T  M R 
Sbjct: 622 RKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPEELKQIELLANRTVMENKRVITEWMPRI 681

Query: 658 DAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +A       L   G    +++R+V V            CGGTH  STG I  + I+    
Sbjct: 682 EAEQVYGFGLYQGGVPPGEKIRIVKVG------DDVEACGGTHCLSTGVIGPIKILKTER 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I+ G+ R+E   G  A   +   +  L   A  L V   ++   VE  + E++ L+  + 
Sbjct: 736 IQDGVERVEFAAGIAAVRAMQKMESLLVDSAKTLSVPPEHLPVSVERFFGEWKDLKKENE 795

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K  L    +        ++A +  +S  +   DS EL+ +   L K+    ++ L+  
Sbjct: 796 RLKEDLARSRVYRMLGDASELAGLRVVSEQVPGADSLELQKIATELLKQ--ENVVTLLAS 853

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E    V  V  + +    NA +L R  +K++GGGGG G+P +A  GG +  +   A++
Sbjct: 854 DLEGVKLVASVGEKAIECGINAGNLVREMSKIVGGGGG-GKPALAMGGGTDPTRIQDALS 912

Query: 891 GVASFLKK 898
                +K+
Sbjct: 913 RGLELVKE 920


>gi|212224880|ref|YP_002308116.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212009837|gb|ACJ17219.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 909

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/968 (22%), Positives = 395/968 (40%), Gaps = 191/968 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  FL FF+K+GH  +    ++P     ++   + ++ F+     G+  P    +
Sbjct: 58  TLDEMREKFLSFFEKHGHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++  TK
Sbjct: 118 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  +    +                             T  +N W+    G  GP  E+ 
Sbjct: 174 ELGMKAEDI-----------------------------TFKENPWAGG--GNAGPAFEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPKMSI 224
           +                  R +E+  LVFMQ+++                +   +  M +
Sbjct: 203 Y------------------RGLEVATLVFMQYKKAPENADPSQVVEIKGDKYVPMETMVV 244

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNN 268
           DTG GLER+  + Q     YD  +  ++I+  +++ G++                 +  +
Sbjct: 245 DTGYGLERLVWMSQGTPTAYDA-VLGYVIEPLKRMAGIEKIDERILMENSKLAGMFDIED 303

Query: 269 IVNHRV----------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
           + + RV                            I DH ++ +F++ADG++P+N   GY+
Sbjct: 304 MGDLRVLRQEVAKRVGISVEELEKLVRPYELIYAIADHTKALTFMLADGVIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   P +  ++     E+  ++PE  + + +I + +  E++R+ +
Sbjct: 364 ARLLIRKSIRHLRELGLEMP-LAEIVAMHIKELSPSFPEFKEMEDVILDIINVEEKRYQE 422

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL RG  L+   ++ L K     +  +     Y++HGL  +I+ +I    G+      +F
Sbjct: 423 TLRRGSDLVKREIAKLKKKGENEIPLEKLILFYESHGLTPEIVAEIAQKEGVKVHIPDNF 482

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + ++     A            + F L +    T+ + Y+     +F  E  +V+  
Sbjct: 483 YTLVAKE-----AEKEEKKEAAQYVVDFELVKDLPDTRTLYYEDPFMKEFDAEVLRVIDD 537

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                                             VV D+T FY E GGQ  DTG   G  
Sbjct: 538 ---------------------------------WVVLDRTAFYPEGGGQPYDTGELNG-- 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++T+VQK   G  + H + E    +  M++   I++  R Q   +H+ TH+L  AL 
Sbjct: 563 --VKVTNVQKV--GKVILHRVEEPEKFKEGMTVHGRINWDRRIQHMRHHTGTHVLMGALV 618

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS +  D  R D++H K IT  EL+ IE   N I+ +N  V    + R +
Sbjct: 619 RVLGKHVWQAGSQLHTDWARLDISHYKRITEEELREIERLANRIVMENRRVAWEWLPRTE 678

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +RV+ +E           CGGTH+ +TG +  + I+    I
Sbjct: 679 AEMKYGFRLYQGGVVPGRIIRVLRIE-----DWDVQACGGTHLPNTGLVGPIKILRTERI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RI    G+ A + +   +  LK  +   +V    +       + E+++ +    +
Sbjct: 734 QDGVERIIFAAGEAAVNWMQETERILKRTSEVFRVPPEKLPETAGRFFNEWKEARKEVER 793

Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
            + +L        +    ++ +V F+  ++      +L+   + L+K     +++L+   
Sbjct: 794 LRKELAKLLVYELEDRIERVGEVEFIGAVVEG-TMDDLREAANKLRK--DKRVVLLISRE 850

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARL---SAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                  ++ V + L     A +LA++    A   GGG    R  +AQ    N  KA++A
Sbjct: 851 G----HFVVAVGDGL--DLKAGELAKVITSVAGGGGGG----RKELAQGRIKNPLKAEEA 900

Query: 889 IAGVASFL 896
           IA V   L
Sbjct: 901 IAEVKKRL 908


>gi|21227588|ref|NP_633510.1| alanyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|24418696|sp|Q8PWU0|SYA_METMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|20905972|gb|AAM31182.1| Alanyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 926

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 220/967 (22%), Positives = 382/967 (39%), Gaps = 178/967 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+S +R  +L FF+  GH  +    ++      +  T + +  F+   T GQ  P    +
Sbjct: 59  NISEMREYYLSFFEARGHTRINRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+KE  ++L  +LL  
Sbjct: 119 TISQPCIRL----NDLDSVGRSGRHLTNFEMMAHHAFNRRDNEIYWKEHTLELCDELL-N 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              ++   L +T                             +  W+    G  GPC E+ 
Sbjct: 174 SLKVNP--LAVTY---------------------------KEEPWAGG--GNAGPCVEVI 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-------ERFILPKMSIDTGMG 229
                                +E+  LVFM  +   K            +    +DTG G
Sbjct: 203 V------------------HGLELATLVFMDLKTDKKGDIEIKGETYSKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------------------- 268
           LER     +     YD  LF  ++     + G+++E N+                     
Sbjct: 245 LERFVWASRGSPTIYDA-LFPGIVNELMGLAGIEHELNDSEYANILAQNARLAGFMDVSE 303

Query: 269 ----------------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                       +     I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 KANLMELRKKVASSIGMTVDKLSAIMEPVEKVYAITDHTRCLTFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +   + L    P +  ++      M   YP   +   +I++ L SE+E+F  
Sbjct: 364 ARLVLRRTLRMMKDLDIRIP-LSEIVDMHIKNM-PEYPGFRENFPVIQDILESEEEKFNT 421

Query: 361 TLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           T++RG  ++    SH  K  E +      +LYD+HG+P ++ +++    G+      +F 
Sbjct: 422 TMERGRRIIQKSASHFKKTGEKIPLSQLTELYDSHGIPPEMAKEVAAEIGVGVEFPDNFY 481

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + E  ++A      +        +    +    T+   YD     +F           
Sbjct: 482 SIIGELHNKAEEKEEEV------NPYAERLKHLPKTKRRFYDEPTRLEF----------- 524

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V  +                 VV D T FYAE GGQ  D G  + +  
Sbjct: 525 ---------EAVVLDVFDN-------------HVVLDNTFFYAEGGGQPADIGTIVAEDT 562

Query: 540 RLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
             ++ DVQ   EG+ +H      +   +     +   +D + R  L+ +H+ATH+++ A 
Sbjct: 563 VYRVVDVQ-VYEGVILHTIENPGKELAITKGELITGKVDEKRRMTLARHHTATHIVNDAA 621

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG H+ Q G+    D  R D++H K I+  E++ IE   N  + +N  VVT  M R 
Sbjct: 622 RKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPEEIRQIELLANRTVMENKRVVTEWMPRT 681

Query: 658 DAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +A       L   G    +++R+V V            CGGTH +STG I  + I+    
Sbjct: 682 EAEQVYGFGLYQGGVPPGEKIRIVKVG------DDVEACGGTHCTSTGIIGPIKILKTER 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I+ G+ RIE   G  A   +   +  L   +  L V   ++   V+  + E++ L+  + 
Sbjct: 736 IQDGVERIEFAAGTAAVRAMQKLESLLVDSSKTLSVPPEHLPVSVDRFFGEWKDLKKENE 795

Query: 776 KRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L    +        +++ +  ++  +S  DS EL+ +   L K     ++ L+  
Sbjct: 796 RLKEELARSRVYRMLGDASEVSGLKVITEQVSGADSLELQKIATELLKT--ENVVALLAS 853

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E    V     + +    NA +L R  +K++GGGGG G+P +A  GG +  +   A+ 
Sbjct: 854 DFEGVKIVASAGEKAMKCGVNAGNLVREMSKIVGGGGG-GKPALAMGGGTDPTRIQDALT 912

Query: 891 GVASFLK 897
                +K
Sbjct: 913 RGLELVK 919


>gi|158286470|ref|XP_308773.4| AGAP006997-PA [Anopheles gambiae str. PEST]
 gi|157020483|gb|EAA45453.4| AGAP006997-PA [Anopheles gambiae str. PEST]
          Length = 1011

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 226/872 (25%), Positives = 383/872 (43%), Gaps = 93/872 (10%)

Query: 6   SIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64
            IR  F+++F  K+ H L+ SSSLIP ND T+ F N+GM  FK++F G  +   Q     
Sbjct: 39  EIRRQFIDYFTVKHNHRLIRSSSLIPFNDSTIAFVNAGMNQFKSVFLGTAERPCQRAVNS 98

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKCVR GGKHNDL  VG  + HHTFFEMLGN+SFG YFK  A ++AWDLL   + +D  R
Sbjct: 99  QKCVRVGGKHNDLSVVGTDSYHHTFFEMLGNWSFGDYFKREACEMAWDLLRNVYRIDTDR 158

Query: 125 LYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +Y+T +          DEE  ++W+ + G+  ++++     DNFW M  +GPCGPC+EI 
Sbjct: 159 VYVTYFGGDAKLNLPADEECRQIWRSL-GIPPERVLPFGARDNFWEMGNSGPCGPCTEIH 217

Query: 177 FDQGECIP---GGLPGSSEEGERYIEIWNLVFMQFEQQ-NKQERFILPKMSIDTGMGLER 232
            D               +       EIWN+VF+Q+ +  +      LP+  +DTGMGLER
Sbjct: 218 LDLSGEYRNTKARQHLVNAGVPDLTEIWNIVFIQYNRSLDDGTIRNLPQRHVDTGMGLER 277

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLRSS 282
           +   LQ K +NYD DLF+ + +  ++ T  +    +             +R++ DH R  
Sbjct: 278 LVAHLQHKQSNYDTDLFEPIFRRIQKATKKEPYRGSFLSTDSHYELDTAYRIMADHSRMI 337

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
           +  +ADG+ P+     + LRRI+R+++  A        L+   +P +   + + YPE+ +
Sbjct: 338 TACLADGMFPSQN---HKLRRIIRKSLALATRTFNHPQLLRETVPCVVEILSTVYPEMGR 394

Query: 343 AKLLIEETLRSEDERF----GKTLDRGLVLLDG-----------------VLSHLGKDEI 381
               + + +  E   +     K       LL                    +  L + + 
Sbjct: 395 NLPTVLQIIEHEQHLYSALRTKRSAETSALLQQFPQLEESEALEHPGLADAIKELAQTKP 454

Query: 382 --LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
             LNG    KLYDT+G    + +++L   G    +++ F+    +     R    G    
Sbjct: 455 THLNGAHIHKLYDTYG----LDEELLVKLG----EMMHFSLDFRDYERYVRVLKDGHKHE 506

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
              K+   L       + +    L+ ++  +                   + V  +++  
Sbjct: 507 LATKLQTRLSAYENLRESLDSATLKPTRAERRYNYAFNADKGTYEVAPCRARVSLLLED- 565

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGI 553
                  +  +  +V DQ+ FY E+GGQ  DTG           G   ++T V      +
Sbjct: 566 ------EARDQWHIVTDQSNFYCESGGQQSDTGRLTVEAGGSAGGQTFEVTGVTDHNGFV 619

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                      L    ++VL +D   R QL+++H+ATHLL+  +  ++   + Q  S ++
Sbjct: 620 MHSIKRQPNVALSVGDTVVLQVDANRRTQLTLHHTATHLLNAVVRKVVALPMCQRSSSVS 679

Query: 614 PDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
               R ++  S + +T  ++ +IE  V  +I +N P+   + N  D   +    + G  Y
Sbjct: 680 ERHFRLELAISGEKLTLEQIAAIETEVRTLINRNEPIGVTVCNAADLDLATVTIVPGETY 739

Query: 673 NDRV-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            DR  RVVS+     G  S  LC GTH + TGE+  + I + +  + G     A+ G  A
Sbjct: 740 PDRGLRVVSI-----GDVSRELCCGTHATRTGELQDVAITNVTQSKNGCFTFHAVAGPAA 794

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED------ 785
           R       +    ++   + ++ N      E  E+   ++    + K  L          
Sbjct: 795 RKVHYLGAQIQNDVSQLQQDAEQN------EKQEDITIIETRMQRLKNVLLTGTDNNIHL 848

Query: 786 ---LSCHKIADVNFMSHIISEVDSKELKSVMD 814
              +    +  +N +   + +   + L+ ++D
Sbjct: 849 PYCVRQRCLDVINALYQKLKDRSRESLRELID 880


>gi|332026963|gb|EGI67059.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 1085

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/835 (27%), Positives = 368/835 (44%), Gaps = 103/835 (12%)

Query: 4   VSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            + IR  FL++F K+  H  + SS + P  D ++ F N+GM  FK IF    KP    V 
Sbjct: 19  ANLIRNEFLDYFTKDLKHSFIRSSPVSPITDHSVAFINAGMNQFKGIFLDYYKPPVTKVV 78

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R GGKHNDL  VG+ + HHTFFEMLGN+SFG YFKE A   AW+LLT  +D+  
Sbjct: 79  NSQKCIRVGGKHNDLSIVGKDSYHHTFFEMLGNWSFGDYFKEDACSYAWNLLTNVYDIPT 138

Query: 123 RRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
             LY+T +  +E        E   +W ++ GL   K++     DNFW M  +GPCGPC+E
Sbjct: 139 EYLYVTYFGGNEELGMSPDLECKDIWLRL-GLPEHKVLPFGMRDNFWEMGVSGPCGPCTE 197

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           I  D  +         ++     +E+WN+VF+Q E+        LP   IDTGMGLER+ 
Sbjct: 198 IHVDYMKRSTNQAERVNKGYADLMELWNIVFIQCERLTNGCIVPLPNHHIDTGMGLERLV 257

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVN--------------HRVIVDHL 279
           T LQ K +NYD DLF+ L  A ++ +   +Y+G    +              +R++ DH 
Sbjct: 258 TFLQGKKSNYDTDLFQPLFDAIQKHSNAPEYKGKFDDDTGKTMVTELSLDYGYRILADHA 317

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           R  +  +AD +LP    +   LR+I+R AM           ++  L   +   +G  YPE
Sbjct: 318 RMITIALADDMLPEQHPK---LRKILRHAMDIGEKTFRKSGIVSELACNVADNLGVTYPE 374

Query: 340 LIQAKLLIEETLRSEDE-----------RFGKTLD-----------------RGLVLLDG 371
           L      +++ +  E+E            + K +                   G   L  
Sbjct: 375 LHTNLKQVQKIIDFEEELLKRLRNTSGKMWNKMIKTRPELIAVTDWMAPGLVDGYKDLQS 434

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L  L K  +L+G VAFKLYDT+GL  + + ++     L   D I F + L+ +R ++R 
Sbjct: 435 MLKELRKTNVLSGIVAFKLYDTYGLNSETIAELAQIECLY-FDEIDFEKQLDNRRYQSRI 493

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                 +  T++    LK+ +         + +     K +           +   +SS 
Sbjct: 494 GLDKHSTVITKESLGILKKNH---------VPKTDDSFKYNYTYNGNIYEFPV---LSSK 541

Query: 492 VKAIVQQGEIVEE----------------------AVSGQKVEVVFDQTPFYAEAGGQLG 529
           +  I+  GE+V                          S  K+ ++ D+T  Y+  GGQ+ 
Sbjct: 542 LIGIIVNGELVASKNYSDIKTNNTNNKTVVNIDEILNSTNKIGIILDKTICYSLEGGQVS 601

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN--------RR 581
           D G      +   I +V+K   G  +H     +  L     L L ID           R 
Sbjct: 602 DKGNIRIKNLLFNIDNVRK-VNGYVIHSGYFAKTDLSI-SELHLQIDDDCLVNIESNIRI 659

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVN 640
               +H+A HLL+ AL  ++   + Q G  +  D L+F   +  + +T  ++K+IED +N
Sbjct: 660 GAMKHHTAAHLLNAALKQVM-QVIYQRGCTVDMDSLKFQFNSLGEQLTLEQMKTIEDCIN 718

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           ++I        + +N  + +      LL  +      +  VE     + +   C GTHV 
Sbjct: 719 NVIQSRAVTTVQTVNSLELLKQNDVMLLPGEIYPYTDIKIVEINTNDLKAKETCCGTHVH 778

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           +T  +     ++ +S  A  R ++A+ G  A       +   + ++    V + +
Sbjct: 779 NTDVLQHFCFLTYTSKGATKRIVKAVVGPEALRMKQAGENICQRISELEGVLRSD 833


>gi|47168789|pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
           Alanyl-Trna Synthetase
          Length = 465

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 204/466 (43%), Positives = 291/466 (62%), Gaps = 14/466 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           +   IR  FL FF+K GH  + S+ L+P NDPTL+F N+G VPFKN+F G EK  Y+  T
Sbjct: 4   SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPYKRAT 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           + QKC+R  GKHNDL+ VG T+RHHTFFE LGNFSFG YFK+ AI+ AW+ +T+   L +
Sbjct: 64  SCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY++VY +DEEA+++W +  G+ +++I R+   DNFW   + GPCGP SEI+ D+GE 
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQXGDVGPCGPSSEIYVDRGEE 183

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G         ERY+EIWNLVF Q+ +        LP  +IDTG GLER+A+VLQ K +
Sbjct: 184 YEG--------DERYLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLERIASVLQGKNS 235

Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           N++ID+   LIQ  E+V+G KY       V  RVI DHLR+ +F I+DG++P+NEGRGYV
Sbjct: 236 NFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
           +RRI+RRA  +   LG   P +   +  +       YPEL  ++  ++  ++ E++RF K
Sbjct: 296 IRRILRRAXRFGYKLGIENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVKGEEKRFIK 355

Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TL  G   +  V+    ++  + L+G   F  YDT+G P+D++ +I   +GL GID+  F
Sbjct: 356 TLKAGXEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGF 414

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
              LEEQR RAR H   + +   + ++  LKE    + F+G   L 
Sbjct: 415 QCELEEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVGAAALE 459


>gi|289191823|ref|YP_003457764.1| alanyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938273|gb|ADC69028.1| alanyl-tRNA synthetase [Methanocaldococcus sp. FS406-22]
          Length = 892

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 218/952 (22%), Positives = 391/952 (41%), Gaps = 176/952 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               +   F+ FF+++GHE +  + +      D  L+   S  V    +  G  KP    
Sbjct: 58  TYKEMVNEFINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWVTKGIVKPKANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   
Sbjct: 118 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G+    I   T  +++W     G  GPC E+
Sbjct: 173 --------------------------KKLGIDEKSI---TFIESWWEGG--GNAGPCYEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+        +P   +DTG G+ER   
Sbjct: 202 I------------------THGVELATLVFMQYEKVGD-SYKEIPLKIVDTGYGIERFVW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------- 270
               +   YD  +FK+++   +   G++     I+                         
Sbjct: 243 ASTGEPTIYDA-IFKNIVNKLKDDAGVEDIDKEILAKITEVAGLMDVKDVGDLRKLREEV 301

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                              +   I DH R+ +F++ DGI+P+N   GY++R ++R+ + +
Sbjct: 302 AKKVNIPVDELDKLISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRH 361

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L  + P+   ++     EM   YPEL+  +  I E L  E  ++ +T++RG  +++ 
Sbjct: 362 MDRLNLSIPI-TEIVAMQLNEMRDLYPELLDMEDYIMEILEIETNKYRQTIERGKGIVER 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +   L   + ++ D   +LYD+HGLP +I++D+  + G       +F   + E+      
Sbjct: 421 L---LKSKKSIDLDNLIELYDSHGLPPEIVKDVAKSLGKDISIPDNFYTIVAERHENKEE 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     +            T+ + Y   +  +F  +  KV+               
Sbjct: 478 VKEKVKLPEVD---------VEKTELLFYKYPKMKEFEAKILKVVND------------- 515

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                                V+ D+T FY E GGQ  DTG  I    + ++ DVQK+  
Sbjct: 516 --------------------YVILDKTAFYPEGGGQKADTGYIIKGDKKFRVIDVQKE-N 554

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I  H        L+   ++   ID+  R  L  NH+ATH+++ A   +LG HV Q GS 
Sbjct: 555 DIVYHKIENLDNELKEGDTVKGVIDWDRRLSLMRNHTATHIINAAAQKVLGKHVWQAGSD 614

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  D  R D+TH K I+  ELK IE   N+I+  N  V +  M+R +A       +   G
Sbjct: 615 VDVDKARLDITHYKRISREELKEIERVANEIVLNNYNVKSVFMDRNEAEEKFGFRIYQGG 674

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + +R+V +E E+G +     CGGTH  +TGE+  + I+    ++ G+ R+   +G 
Sbjct: 675 VVPGNILRIVIIEDENGNIVDVEACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGL 734

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLS 787
            A   +   ++ L+  A  L+     +   ++  +EE+++   ++   ++K+    +   
Sbjct: 735 SALKAVQEMEDTLEESAEILRCPTEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFEL 794

Query: 788 CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            +K   +     ++ +V++  KE+ ++ D L    ++ I++L+      K ++L    E 
Sbjct: 795 MNKFETIGNYKVLVEKVEANPKEMLNIADNLAN--ENAIVVLL----NDKDNILCKRGES 848

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +    N  +L R  A       GGGR H+AQ  G      ++    V  F+K
Sbjct: 849 V--DINMAELIRYIA------KGGGREHLAQ--GKYEGDVEEIKKKVIEFIK 890


>gi|225629791|ref|ZP_03787728.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591355|gb|EEH12458.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 535

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/560 (42%), Positives = 335/560 (59%), Gaps = 35/560 (6%)

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRV 274
               LPK  IDTGMGLER+A V+Q   +NYDIDLF  LI  S++  G      N + H++
Sbjct: 1   NLHKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCGRT---ENKIAHKI 57

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           I DHLR+++FLIA+G+LP NEGR YVLRR++RRA  Y  LLGY + L+  + P L     
Sbjct: 58  IADHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTS 117

Query: 335 SAY--PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           SAY   EL++AK LIE TL+SE+E F  TL +G+ LL+   + L   + L G+ AFKLYD
Sbjct: 118 SAYMGAELVRAKSLIETTLKSEEENFKDTLMKGINLLEKFTTDLKSGDTLPGESAFKLYD 177

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G PLDI  DIL  + +   D   F+ A+ EQ+ RARA   G G  + E++WF L  K+
Sbjct: 178 TYGFPLDITLDILKEKKI-NFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLINKF 236

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-QGEIVEEAVSGQKV 511
           G T+F+GY+    S                       + + AIV  + E+++ A  G+K+
Sbjct: 237 GKTKFVGYEFNEVSD----------------------AKILAIVSSKNEVIDSAKEGEKI 274

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            ++ D+TPFY E+GGQ+GDTG  I     + I +   K   +++H  IV+ G +    ++
Sbjct: 275 TIILDKTPFYGESGGQVGDTGNLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTV 334

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             +ID + R+ L  NHSATHLLH  L  ILG HV+Q GS + PD LRFD +H+  +T  +
Sbjct: 335 AASIDKERRQTLRRNHSATHLLHFTLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQ 394

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  +ED VN +I +NL   T+I +   AI  GA AL G KY+D+VRVV +        S 
Sbjct: 395 LFLVEDMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYSDQVRVVKIG------DSR 448

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV  TGEI L  IV+ESS+  G+RRIEA+TGQ A +++   +  LK +A F+K 
Sbjct: 449 ELCGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKA 508

Query: 752 SQGNVVGRVEEIWEEYRKLQ 771
               +  R+  + +E++K +
Sbjct: 509 PVSEITSRLSILSQEHKKSE 528


>gi|332158554|ref|YP_004423833.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034017|gb|AEC51829.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 916

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/968 (22%), Positives = 392/968 (40%), Gaps = 184/968 (19%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL+FF+K+    H  +    ++P     ++   + ++ F+     G+  P  
Sbjct: 58  TLDEMREKFLKFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +    +                             T  +N W+    G  GP  
Sbjct: 174 FTKELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  R +E+  LVFMQ+++               ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVIIKGEKYVPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------- 271
             +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+           
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGVEKIDERILMENSRLAGMFD 303

Query: 272 ----------------------------------HRVIVDHLRSSSFLIADGILPANEGR 297
                                                I DH ++ +F++ADG++P+N   
Sbjct: 304 IEDLGDLRYLREQVAKRVGISVEELEKAVRPYELIYAIADHTKALTFMLADGVVPSNVKA 363

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ R ++R+++ + R LG   P +  ++     E+   +PE  + + +I E +  E+++
Sbjct: 364 GYLARLLIRKSLRHLRELGLEVP-LAEIVAMHIKELHKTFPEFKEMEDIILEMIELEEKK 422

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + +TL RG  L+   ++ L K  +  +  +     Y++HGL  +I+++I    G+     
Sbjct: 423 YAETLRRGSDLVKREVAKLKKKGVKEIPLEKLVMFYESHGLTPEIVKEIAEKEGIEVNIP 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F   + ++     A          E + F L +    T+ + Y+     +F     KV
Sbjct: 483 DNFYSIVAKE-----AEKGREEEEEKEIVDFELVKDLQETRTLYYEDPFMKEFTARVIKV 537

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
           +                                    VV D+T FY E GGQ  DTG  +
Sbjct: 538 IGD---------------------------------WVVLDRTAFYPEGGGQPYDTGVLL 564

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            DG  +++T+VQK   G  + H + +  + R  + +   ID+  R Q   +H+ TH+L  
Sbjct: 565 VDGTEVKVTNVQKV--GRVILHKVEKPELFREGIEVHGKIDWDRRIQHMRHHTGTHVLMG 622

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +T D  R D++H K I+  EL+ IE   N I+ +N  V    + 
Sbjct: 623 ALVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELREIEMLANKIVMENRKVTWEWLP 682

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R +A       L   G      +RV+++E  D        CGGTH+ STG +  + I+  
Sbjct: 683 RTEAEQKYGFRLYQGGVVPGRTIRVINIEGWD-----VQACGGTHLPSTGLVGPIKILRT 737

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             I+ G+ RI    G+ A        E LK  +  L+V    +    E  + E+++ +  
Sbjct: 738 ERIQDGVERIIFACGEAAIKEWQKDRELLKRASQVLRVPPEKLPETAERFFNEWKEARKE 797

Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
             K K +L    +        +I D+ F+  ++      +L+  ++ L++     + +L+
Sbjct: 798 VEKLKKELAKLLVYELESKVERINDIEFIGEVVEG-SMDDLREAVEKLRR--PKRVTVLI 854

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             SKE   +V +    ++  R  A ++  ++    GG        +AQ       KA + 
Sbjct: 855 --SKEGYFAVSVGEGIEVDARTIAKEITSIAGGGGGGRR-----EIAQGKIKEVGKAREV 907

Query: 889 IAGVASFL 896
           I  V   L
Sbjct: 908 IKHVRELL 915


>gi|302415839|ref|XP_003005751.1| alanyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261355167|gb|EEY17595.1| alanyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 868

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/945 (26%), Positives = 398/945 (42%), Gaps = 139/945 (14%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVY-- 58
            + +R TF++FF++ GH ++PSSS++P NDPTL+FTN+GM  FK+IF G   Q  P Y  
Sbjct: 9   AAKVRETFIKFFEERGHTVVPSSSVVPHNDPTLLFTNAGMNQFKSIFLGTIAQSDPTYGL 68

Query: 59  QAVTTVQK----CVRAGGKHNDLD---NVGRTNRHHTFFEMLGNFSFG--GYFKERAIQL 109
           +  T  QK    C  A  + ++L    +     + H+FFEMLGN+SFG   YFK+ AI+ 
Sbjct: 69  KRATDTQKGMSSCPTAANRASELTVWCSYSCRWQGHSFFEMLGNWSFGPQDYFKKDAIKY 128

Query: 110 AWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFW 161
           +W+ +T+   L++ RLY+T ++ D         E+ +LWK + G+    I+  +  DN+W
Sbjct: 129 SWEFMTETLGLEKDRLYVTYFEGDPAQGLEPDLESKELWKSV-GVPESHILPGSKADNWW 187

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           SM +TGPCGPCSE+ +D+           +++    +E+WN V+M ++++  Q    LP 
Sbjct: 188 SMGDTGPCGPCSELHYDKIGG-RDAAHLVNKDDPMVVELWNNVWMAYDRRADQSLTPLPA 246

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNH 272
             +DTGMG ER+   LQ+ ++NY  D++    +  ++VTG +   +             +
Sbjct: 247 QHVDTGMGFERLVAALQDVSSNYATDIWSPYFKKIQEVTGTRAYTDKYGAEDPETIDTAY 306

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALC 330
           R   DH+R   F IADG +P NEGRGYV+RR++RR   YAR     E       +LP L 
Sbjct: 307 RACADHIRMLGFAIADGAVPNNEGRGYVVRRVLRRGARYARKYLNAEIGTFFSRVLPTLI 366

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAF 388
            EMG  +PEL++ +  I+E L  E+E F KTLDRG            K   + L+G   +
Sbjct: 367 DEMGQQFPELVKKQNDIKEILDEEEEAFAKTLDRGEAQFQKFAGAAEKKGLKKLSGAEVW 426

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448
           KLYDT+G P+D+ Q +   RGL   D       ++  + +AR  S  + S          
Sbjct: 427 KLYDTYGFPVDLTQLMAEERGLQIDDEE-----VKAAQEKAREASKSVKSAIE------- 474

Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---A 505
                   F   D+   ++  ++ +          +       V+ I      V+     
Sbjct: 475 -------TFPKLDVHGIAELEQQHKVARTNDADKYVKGDSKGKVQLIFDGKGFVKSTKDI 527

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                + V+ D+T FYAEAGGQ                        G  +HH  +E G L
Sbjct: 528 AENTPISVILDKTNFYAEAGGQGY---------------------GGYILHHGYIESGTL 566

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                       + RR   I H      H   S          G  +   G   D+  + 
Sbjct: 567 FVRRRGY----LRVRRAAPIPHQEQSHGH---SHSEPRPARGAGEDVNQKGS-LDLLENP 618

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                   S+E      + Q   +   ++  E  IA G             R+++   + 
Sbjct: 619 KKPEWRNISVEFCGGTHVEQTGHIKDLVIVEESGIAKGIR-----------RIIAFTGDA 667

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                      T +S   +I                 +EA        +   +++++K +
Sbjct: 668 AHQVQREA---TELSRQLDI-----------------VEA------LPYSPEKEKEVKEV 701

Query: 746 ASFL-KVSQGNVV---------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              L K +   +            V+ I +E +K Q   AK  L   V+           
Sbjct: 702 QQALSKATISTLTKDELKKKLDKMVKAITDEQKKRQKAEAKTALD-TVQKYFTENPDAKA 760

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV--LIVVTEDLLDRFNAV 853
           ++  +    ++K L   +     K +   + L G  KE+ A V  + V T        A 
Sbjct: 761 YVGQLPISANTKALTETIKHYSTKDKERSVYLFGGGKEENAVVHGVYVGTHLASKGVTAE 820

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             A   + V+GG  GG  P   Q  G      D  +     +L++
Sbjct: 821 AWASTVSDVVGGKSGGKEPTR-QGQGTKPEATDDGVKAATKWLEE 864


>gi|15668744|ref|NP_247543.1| alanyl-tRNA synthetase [Methanocaldococcus jannaschii DSM 2661]
 gi|2500963|sp|Q57984|SYA_METJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|1591270|gb|AAB98556.1| alanyl-tRNA synthetase (alaS) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 892

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 218/952 (22%), Positives = 396/952 (41%), Gaps = 176/952 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               +   F+ FF+++GHE +  + +      D  L+   S  V    I  G  KP    
Sbjct: 58  TYKEMVKEFINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWITKGIVKPKANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   
Sbjct: 118 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G+    I   T  +++W     G  GPC E+
Sbjct: 173 --------------------------KKLGIDEKSI---TFIESWWEGG--GNAGPCYEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+        +P   +DTG G+ER   
Sbjct: 202 I------------------THGVELATLVFMQYEKVGD-NYKEIPLKIVDTGYGIERFVW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------- 270
               +   YD  +FK+++   ++  G+K     I+                         
Sbjct: 243 ASTGEPTIYDA-IFKNIVNKLKEDAGVKDIDKEILAKITEVAGLMDVKDVGDLRKLREEV 301

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                              +   IVDH R+ +F++ DGI+P+N   GY++R ++R+ + +
Sbjct: 302 ANKVNIPVEELDKLISPYEDIYAIVDHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRH 361

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L  + P+   ++     E+   YPEL+  +  I E L  E  ++ +T++RG  +++ 
Sbjct: 362 MDRLNLSTPI-TEIVAMQLNELKDLYPELLDMEDYIMEILEIETNKYRQTIERGKGIVER 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +   L   + ++ +   +LYD+HGLP +I++D+  + G       +F   + E+    + 
Sbjct: 421 L---LKSKKEIDLENLIELYDSHGLPPEIVKDVAKSLGKDVKIPDNFYTIVAERHENKKE 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +                  T+ + Y+  +  +F                     + 
Sbjct: 478 VKEKIKLPEVN---------VDKTELLFYEYPKMKEF--------------------EAK 508

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  IV                V+ D+T FY E GGQ  DTG  I    + ++ DVQK+  
Sbjct: 509 ILRIVDD-------------YVILDRTAFYPEGGGQKADTGYIIKGDKKFRVVDVQKE-N 554

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I  H        L+    +   ID++ R  L  NH+ATH+++ A   +LG HV Q GS 
Sbjct: 555 NIVYHKIENLNDELKEGDIVKGVIDWKRRLSLMRNHTATHIINAAAQKVLGRHVWQAGSD 614

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  D  R D+TH K I+  ELK IE   N+I+  N  + +  M+R +A       +   G
Sbjct: 615 VDVDKARLDITHYKRISREELKDIERVANEIVLNNYNIKSIFMDRNEAEEKFGFRIYQGG 674

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + +R+V +E E+G +     CGGTH  +TGE+  + I+    ++ G+ R+   +G 
Sbjct: 675 VVPGNVLRIVIIEDENGNIVDVQACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGL 734

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLS 787
            A   +   ++ L+  A  L+     +   ++  +EE+++   ++   ++K+    +   
Sbjct: 735 SALKAVQEMEDILEESAEILRCPTEELPKVIKRFFEEWKEQRKKIEELEKKIGELKKFEL 794

Query: 788 CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            +K   +     ++ +V++  KE+ ++ D L    ++ I++L+      K ++L    E+
Sbjct: 795 INKFETIGNYKVLVEKVEANPKEMLNIADNLA--TENAIVVLL----NDKGNILCKRGEN 848

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  + N  +L R  A       GGGR H+AQ  G      ++    V  F+K
Sbjct: 849 VDIKMN--ELIRYIA------KGGGREHLAQ--GKYEGDVEEIKKKVIEFIK 890


>gi|256810754|ref|YP_003128123.1| alanyl-tRNA synthetase [Methanocaldococcus fervens AG86]
 gi|256793954|gb|ACV24623.1| alanyl-tRNA synthetase [Methanocaldococcus fervens AG86]
          Length = 892

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 217/952 (22%), Positives = 395/952 (41%), Gaps = 176/952 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
               +   F++FF+++GH  +  + +      D  L+   S  V    +  G  +P    
Sbjct: 58  TYKEMVNEFIDFFKEHGHTPIKRAPVTARRWRDDILLTIASIAVFQPWVTKGIVEPKANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   
Sbjct: 118 LVITQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   +D++ +                             T  +++W     G  GPC E+
Sbjct: 173 KRLGIDEKSI-----------------------------TFIESWWEGG--GNAGPCYEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+        +P   +DTG G++R   
Sbjct: 202 I------------------THGVELTTLVFMQYEKIGD-TYKEIPLKIVDTGYGIDRFVW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------- 270
               +   YD  +FK+++   ++  G+K     I+                         
Sbjct: 243 ASTGEPTIYDA-IFKNIVNKLKEDAGVKGIDKEILAKITEVAGLMDVKDVGDLRKLREEV 301

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                              +   I DH R+ +F++ DGI+P+N   GY++R ++R+ + +
Sbjct: 302 ANKVNIPVEELDELISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRH 361

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L  + P+   ++     E+   YPEL+  +  I E L  E +++ +T++RG  +++ 
Sbjct: 362 MDRLNLSMPI-TEIVAMQLKELRDLYPELLDMEDYIMEILDIETKKYRQTIERGKGIVER 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +   L   + L  D   +LYD+HGLP +I++D+  + G       +F   + E+      
Sbjct: 421 L---LKSKKALELDDLIELYDSHGLPPEIVKDVAKSLGKEVNIPDNFYTIVAERHENKEE 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     +            T+ + Y+  +  +F  +  KV+               
Sbjct: 478 TKEEFKLPEVD---------VEKTELLFYEYPKMKEFEAKILKVVND------------- 515

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                                V+ D+T FY E GGQ  DTG  I    + ++ DVQK+  
Sbjct: 516 --------------------YVILDKTAFYPEGGGQKADTGYLIKGDKKYRVIDVQKE-N 554

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I  H        L+    +   ID+  R  L  NH+ATH+++ A   +LG HV Q GS 
Sbjct: 555 NIVYHKIENLDDELKEGDVVRGVIDWDRRLSLMRNHTATHIINAAAQKVLGKHVWQAGSD 614

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  D  R D+TH K I+  ELK IE   N+II  N  V +  M+R +A       +   G
Sbjct: 615 VDVDKARLDITHYKRISREELKEIERIANEIILSNYNVKSVFMDRNEAEEKFGFRIYQGG 674

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               + +R+V +E EDG +     CGGTH  +TGE+  + I+    ++ G+ R+   +G 
Sbjct: 675 VVPGNVLRIVIIEDEDGNIVDVEACGGTHCQNTGEVGFIKIIKTERVQDGVERLIYSSGL 734

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLS 787
            A   +   ++ L+  A  L+     +   +   +EE+++   ++   ++K+    +   
Sbjct: 735 SALKAVQEMEDILEESAEILRCPAEELPKVINRFFEEWKEQRKKIEELEKKIGELKKFEL 794

Query: 788 CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            +K   V     ++ +V++  KE+ ++ D L    ++ I++L+     +K ++L    E+
Sbjct: 795 MNKFETVGDYKVLVEKVEANPKEMLNIADNLA--TENAIVVLL----NEKGNILCKRGEN 848

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  R +  +L +  A       GGGR H+AQ  G      ++    V  F+K
Sbjct: 849 VDIRMD--ELIKYVA------KGGGREHLAQ--GKYEGDIEEIKKKVIEFIK 890


>gi|116753969|ref|YP_843087.1| alanyl-tRNA synthetase [Methanosaeta thermophila PT]
 gi|121694533|sp|A0B6X3|SYA_METTP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|116665420|gb|ABK14447.1| alanyl-tRNA synthetase [Methanosaeta thermophila PT]
          Length = 913

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 229/967 (23%), Positives = 383/967 (39%), Gaps = 185/967 (19%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + S+R  +L FF+ +GH  +    ++      +  T + +  F+   T GQ  P    
Sbjct: 58  MELDSMREHYLSFFEAHGHTRVQRYPVVARWRDDIYLTIASIADFQPFVTSGQVPPPANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +T  Q C+R     +DLD+VGR+ RH T FEM+ +  F       Y+K+R ++L  +LL 
Sbjct: 118 LTISQPCIRL----DDLDSVGRSGRHLTTFEMMAHHVFNTKEHEIYWKDRTVELCDELLL 173

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +D   +                             T  ++ W+    G  GP  E+
Sbjct: 174 -GLGVDPESI-----------------------------TYKESPWAGG--GNAGPSLEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGM 228
                                 +E+  LVFM     +  E  I       +    +DTG 
Sbjct: 202 LV------------------GGLELATLVFMNLRLDSSGEYVIKGERYSRMDNYIVDTGY 243

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI------------------- 269
           GLER     +     YD  +F  +++    + G++++ ++                    
Sbjct: 244 GLERFVWASKGSPTIYDA-VFPDIVRELSDLAGVEHDLHDPEYAEIFARNARLAGMIDLG 302

Query: 270 -----------------------------VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                             I DH R  ++++ DGI+P+N   GY+
Sbjct: 303 EASLRDLRKRIAESINTTPERLERIMAPMERIYAIADHTRCLAYMLGDGIIPSNVKAGYL 362

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +   + L    P +  ++          Y +  +    I E L  E+ER+ +
Sbjct: 363 ARLVIRRTLRMMKDLKLEIP-LSEIVEMQI--SKLDYDDWRERMETISEILSLEEERYAE 419

Query: 361 TLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           TL++G  ++  + SH   K   +       LYDTHG+P +I ++   A G+      +F 
Sbjct: 420 TLEKGSRMVSKIASHYSKKGGRIPLTELVSLYDTHGIPPEIARETAGALGVDVELPDNFY 479

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +    SRA    +   S   EK       +    +F                      
Sbjct: 480 SIVASTHSRAEQREVETRSPPFEKTERLFYYRPFDQEF---------------------- 517

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     + V  I              +  VV D+T FY E GGQ  D G  + DG 
Sbjct: 518 ---------DATVLGIF-------------EGSVVLDRTLFYPEGGGQPADRGVLVRDGQ 555

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + DVQ   +G+ +H   VE+  L     +   ID + R   + +H+ATH+++ +   
Sbjct: 556 VFNVNDVQ-MIDGVVLHR--VEQEGLSPGDRVTGRIDMRRRMAHARHHTATHIVNDSAKR 612

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q G+  + D  R D++H + I+  ELK+IE   N  + + +PV+T  M RE+A
Sbjct: 613 VLGRHVWQAGAQKSEDRARLDISHYRRISDEELKAIELEANRRVMEMIPVITEFMPREEA 672

Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L   G      +RVV V            C GTHV++TG I  + I+    ++
Sbjct: 673 ERLFGFQLYQGGVPPGREIRVVRVGS------DIEACAGTHVTNTGMIGPIKILRTERVQ 726

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RIE   G+ A   +  +D+ L   AS L+V    +   V   +EE++  Q +    
Sbjct: 727 DGVERIEFAAGEAAVQRIQERDDILAEAASILRVPIEQLPRTVFRFFEEWKDQQKVIEHL 786

Query: 778 KLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           K ++              +  V+ ++  + E D + L      L ++    I  ++G + 
Sbjct: 787 KEEIAGIRILTLSSEAVDVNGVSIVARDMGESDGETLLKAATMLSER---DITAILGGAS 843

Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
              A +++ V    L+R  NA D+ R +AK +GGGGG G+P +AQ GGPN      AI  
Sbjct: 844 GGAAKIVVSVGRSGLERGLNAADIVRAAAKYIGGGGG-GKPDLAQGGGPNVGGLRAAIDA 902

Query: 892 VASFLKK 898
             S  +K
Sbjct: 903 GMSAARK 909


>gi|294495054|ref|YP_003541547.1| alanyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
 gi|292666053|gb|ADE35902.1| alanyl-tRNA synthetase [Methanohalophilus mahii DSM 5219]
          Length = 924

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/968 (22%), Positives = 384/968 (39%), Gaps = 178/968 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N++ +R  +L +F+KNGH  +    +I      +  T + +  F+   T GQ  P    +
Sbjct: 59  NLAQMREFYLSYFEKNGHTRIERYPVIARWRNDIYLTIASIADFQPFVTSGQVAPPANPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD VGR+ RH T FEM+ + +F       Y+K+R +QL   LL +
Sbjct: 119 TISQPCIRL----SDLDAVGRSGRHLTTFEMMAHHAFNKKSNEIYWKDRTVQLCDGLLNE 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D                                +T  +  W+    G  G C E+ 
Sbjct: 175 -LGVDP-----------------------------FAVTYKEEPWAGG--GNAGACVEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-------ERFILPKMSIDTGMG 229
                                +E+  LVFM  +Q               +    +DTG G
Sbjct: 203 I------------------GGLEVATLVFMNLQQSKNGDIVIKGDTYRKMDNYIVDTGYG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--------------------- 268
           LER+    Q     YD  +F  ++    ++ G+++   +                     
Sbjct: 245 LERLVWASQGTPTVYDA-IFPEVVGELMELAGVEHRLEDEDYANILSQNARLAGLMDVSE 303

Query: 269 ----------------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
                                       +     I DH R  +F++ DGI+P+N   GY+
Sbjct: 304 KANLLELRKQVASNIGITADKLGTIMEPVETAYAIADHARCITFMLGDGIIPSNVKAGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR M   + L    P +  ++      +   YPE      +I + L +E+++F +
Sbjct: 364 ARLVIRRTMKMMQDLDIKIP-LSDIVQMHINHL-PEYPEFADRFDVISDILDNEEKKFQE 421

Query: 361 TLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           TL RG  L+     H  K  E +  D    +YD+HG+P +I ++     G+      +F 
Sbjct: 422 TLQRGKKLIQKSAKHYKKKGEKMPLDTVIDMYDSHGIPAEISREAASEVGVEVELPDNFY 481

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + E+      HS  +     E  +    +K   T+ + YD     +F           
Sbjct: 482 SLVAER------HSKSVQEHEKEIPYADRLKKLPPTKRLFYDEPNRMEF----------- 524

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V  +                 +V D T  Y E GGQ  D G  + D  
Sbjct: 525 ---------EAVVLDVFDNN-------------IVLDSTLLYPEGGGQPPDHGTFMVDDA 562

Query: 540 RLQITDVQKKAEGIFVHHA--IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
            L++ DVQ   +GI +H    I +   +R    +   +D + R   + NH+ATH+++ A 
Sbjct: 563 LLKVIDVQI-FDGIVIHTIEEIEDELHIRKGDMVTGKVDEKRRMAHARNHTATHIINDAA 621

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +LG H+ Q G+    D  R D++H K I   E+  IE   N ++ +N  V++  M+R 
Sbjct: 622 RQVLGEHIWQAGAQKFADRARLDISHYKRIVPEEINEIEMIANQMVMENKRVISEWMDRS 681

Query: 658 DAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            A      +L   G    DR+RV+ V            C GTH + TG++  + I+    
Sbjct: 682 TAEKRYGFSLYQGGVPPGDRIRVLHVGS------DIEACAGTHCTFTGQVGPIKILKTER 735

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           I+ G+ RIE   G+ A      +D+ L+S A  L+V+   +   +E  + E+++ +  + 
Sbjct: 736 IQDGVERIEYAAGEAAVVAFQERDKLLRSSAETLRVATEQLPTTIERFFTEWKEFKKENT 795

Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
           + K +L    +     +  ++ ++  ++  +   D+ EL  +   L       I+ L+  
Sbjct: 796 RLKKELAESRVNQLVENAEQLKEIRLINSRVDGADADELTRMAGELASS--DDIVALLIS 853

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
             E            +    N  ++ R  A + GGGGG G+P MA+ GG + +K D+ +A
Sbjct: 854 DHEGAKIAAAAGDSAVSKGINVGNIVREIANLTGGGGG-GKPSMARGGGQDSSKIDEGLA 912

Query: 891 GVASFLKK 898
                +++
Sbjct: 913 LGRRMVEE 920


>gi|51102330|gb|AAT95878.1| alanyl-tRNA synthetase [Naegleria gruberi]
          Length = 614

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 192/635 (30%), Positives = 319/635 (50%), Gaps = 52/635 (8%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKIS 144
           LGN+SFG YFK  AI  AW+LLT+ + L++ RLY+T +          DEEA ++W +  
Sbjct: 1   LGNWSFGDYFKREAITWAWELLTEVYGLEKDRLYVTYFGGNEKLNLPADEEAKQIWGQF- 59

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
            +  D I+  +  DNFW M +TGPCGPCSEI +D+           + +    +EIWN V
Sbjct: 60  -VPDDHILPGSMKDNFWEMGDTGPCGPCSEIHYDRIGGRNAAH-LVNMDDPNVLEIWNNV 117

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           FM+F ++  Q    LP   +DTGMGLER+ ++LQ K +NYD D+F  + +A ++ TG + 
Sbjct: 118 FMEFNRKEDQTLEYLPAKHVDTGMGLERLVSILQNKMSNYDTDVFMPIFEAIQKETGSRP 177

Query: 265 EGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                           +RVI DH+R+    ++DG  P N GRGYVLRRI+RRA+ +   +
Sbjct: 178 YTGKLGAEDVDHIDTAYRVIADHIRTLVIALSDGGYPDNTGRGYVLRRIVRRAVRFGEFM 237

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
              +  +  L   +   MG  +PEL +    +EE ++SE+  F KTL  GL   + +   
Sbjct: 238 NAKKGFLTRLASCVVELMGDFFPELKKNSEKVEELIQSEEVLFAKTLRVGLKFFNRIAEK 297

Query: 376 LGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
           +  +   +++G  AFKLY T+G P+D+   +   +G+  +D++ + + +E+        S
Sbjct: 298 MKSNGESVVSGPDAFKLYATYGFPVDLTLIMAQEQGMT-VDMVEYKKEMEKHA----TAS 352

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
            G     T+               +   ++   K   E +    Q     +   + + V 
Sbjct: 353 QGTKQEATD---------------MKLGVIETDKLQNELKIEPTQDDIKYVWENIQAKVV 397

Query: 494 AIVQQGE-IVEEAVSGQK---VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           AI  +    VEE  +  +   + ++ DQT FYAE GGQ  D G        L++ +VQK 
Sbjct: 398 AIFSESSGFVEELNTECEEVNIGIILDQTNFYAEGGGQAPDNGVLRIGETELKVVNVQK- 456

Query: 550 AEGIFVHHAIVER----GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             G  +H   V      G +    ++   ++Y+ R  ++ NH++TH+L+ AL  +LG+  
Sbjct: 457 FAGYILHIVNVSESKLAGNVTVGTTVSSEVNYERREPIAANHTSTHMLNFALRKVLGTDC 516

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGA 664
            Q GS +  + L FD + +K  +  ++  +E  VND+I  + PV +++  R+ A   +G 
Sbjct: 517 DQQGSIVKEEELCFDFSAAKAPSVEQVAEVEKIVNDLIVADHPVFSKVQERDAAYEINGL 576

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            A+    Y ++VRVVS+  +   + +        +
Sbjct: 577 RAMFSANYGEQVRVVSIGQDSDSIMTDRSNEKWRL 611


>gi|242399787|ref|YP_002995212.1| Alanyl-tRNA synthetase [Thermococcus sibiricus MM 739]
 gi|242266181|gb|ACS90863.1| Alanyl-tRNA synthetase [Thermococcus sibiricus MM 739]
          Length = 911

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 208/968 (21%), Positives = 385/968 (39%), Gaps = 190/968 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  FL +F++  H  +    ++P     ++   + ++ F+     G+  P    +
Sbjct: 60  TLEEMREAFLSYFERKNHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++ A++  TK
Sbjct: 120 TISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVEYAYEFFTK 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           +  +    +                             T  +N W+    G  GP  E+ 
Sbjct: 176 DLGMKGEDI-----------------------------TFKENPWAGG--GNAGPAFEVL 204

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPKMSI 224
           +                  R +E+  LVFMQ++                 +   +    +
Sbjct: 205 Y------------------RGLEVATLVFMQYKLAPPDADPSQIVEIKGDKYVPMDTRVV 246

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-------------- 270
           DTG GLER+  + Q     YD  +  ++++  +++ G+    + I+              
Sbjct: 247 DTGYGLERLVWMSQGTPTAYDA-VLGYVVKPLKRMAGIDKIDDRILMENSRLAGMFDIED 305

Query: 271 --NHRV----------------------------IVDHLRSSSFLIADGILPANEGRGYV 300
             + RV                            I DH ++ +F++ADG++P+N   GY+
Sbjct: 306 MGDLRVLRETVAKNVDMAPDELTRLVRPYELIYAIADHTKALTFMLADGVVPSNAKAGYL 365

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++R+++ + R LG   P +  ++     E+   +PE  + + ++ + +  E+ ++  
Sbjct: 366 ARLLIRKSIRHLRELGLQIP-LSEIVAMHIKELHKTFPEFKEMEDVVIDMVNVEERKYAD 424

Query: 361 TLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           TLDRG  L+   +  L K  +  L  +     Y++HGL  +I+++I    G+      +F
Sbjct: 425 TLDRGNDLVRREIERLKKQGVGELPLERLMLFYESHGLTPEIVKEIAEKEGMTVRIPDNF 484

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + ++     A          + + F L +    T+ + Y+                 
Sbjct: 485 YSLVAKE-----AEKGIKEEEEKKIVDFELVQDLPDTRTLYYEEP--------------- 524

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                L     + V  I++               VV D T FY E GGQ  D G   G  
Sbjct: 525 -----LMKEFDAKVVGIIED-------------WVVLDATAFYPEGGGQPCDLGELNG-- 564

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ DVQK   G  + H + E    +    +   I+++ R Q   +H+ TH+L  AL 
Sbjct: 565 --VEVLDVQKV--GKIILHKVKEPEKFKERGIVHGKINWERRIQHMRHHTGTHVLMGALV 620

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS ++ D  R D+ H K ++  ELK IE   N I+ ++  V    + R +
Sbjct: 621 RVLGKHVWQAGSQLSTDWARLDIAHYKRVSEEELKEIELLANRIVMEDREVKWEWLPRTE 680

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +RV++++           CGGTH+  TG I  + I+    I
Sbjct: 681 AEQRYGFRLYQGGVVPGRVIRVLNIK-----DWDVQACGGTHLPRTGLIGPIKILRTERI 735

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RI    G+ A      + E +   +   +V    +       +EE+++ +    K
Sbjct: 736 QDGVERIIFACGEAAIKEWQKEREIISKTSEVFRVPLEKLPETAGRFFEEWKQARKEVEK 795

Query: 777 RKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
              +L        +    KI ++ F+  ++   +   L+     L+ K  + I+ L+   
Sbjct: 796 LNKELAKLLVYELENRVEKIGEIEFIGAVVEG-EIDHLREAA--LKLKKSNRIVALIS-- 850

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARL---SAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            E+  +V++ V EDL   + A DL R+    A   GGG    +  +AQ    N  KA +A
Sbjct: 851 -EESNAVVVTVGEDL--NYKAGDLIRIITRVAGGGGGG----KKDLAQGKIKNILKAKEA 903

Query: 889 IAGVASFL 896
           +  +   L
Sbjct: 904 LEELKKAL 911


>gi|261402487|ref|YP_003246711.1| alanyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
 gi|261369480|gb|ACX72229.1| alanyl-tRNA synthetase [Methanocaldococcus vulcanius M7]
          Length = 895

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 219/955 (22%), Positives = 398/955 (41%), Gaps = 179/955 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   +   F+ FF+++GHE +  + +      D  L+   S  V    I  G  KP    
Sbjct: 58  DYKEMVKEFINFFKEHGHEPIKRAPVTARRWRDDILLTIASIAVFQPWITKGIVKPKANP 117

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+++  ++L ++   
Sbjct: 118 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNREDDFKYWQDETVELCFNFF- 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G+    I   T  +++W     G  GPC E+
Sbjct: 173 --------------------------KKLGIDEKSI---TFIESWWEGG--GNAGPCYEV 201

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+        +P   +DTG G+ER   
Sbjct: 202 I------------------THGVELATLVFMQYEKVGD-NYKEIPLKIVDTGYGIERFVW 242

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------- 270
               +   YD  +FK+++   ++  G+K     I+                         
Sbjct: 243 ASTGEPTIYDA-IFKNIVNKLKEDAGVKDIDKEILAKITEVAGLMDVKDVGDLRKLREEV 301

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                              +   I DH R+ +F++ DGI+P+N   GY++R ++R+ + +
Sbjct: 302 AKKVNIQVEDLDKLISPYEDIYAIADHTRALAFMLGDGIVPSNVKDGYLVRMLIRKTLRH 361

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L  + P+   ++     E+   YPEL+  +  I E L  E++++ +T++RG  +++ 
Sbjct: 362 MDRLNLSTPI-TEIVAMQLNELKDLYPELLDMEDYIMEILELEEDKYRQTIERGKGIVER 420

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +   L   + ++ +   +LYD+HGLP +I++D+  + G       +F   + E+    + 
Sbjct: 421 L---LKNKKDIDLENLIELYDSHGLPPEIVKDVAKSLGKDVKIPDNFYTIVAERHENKKE 477

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     +            T+ + Y+  +  +F  +  KV                
Sbjct: 478 VKEKIKLPEVD---------VDKTELLFYEYPKMKEFEAKVLKVADD------------- 515

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                                V+ D+T FY E GGQ  DTG  I    + ++ DVQK+  
Sbjct: 516 --------------------YVILDKTAFYPEGGGQKADTGYIIKGDKKFRVIDVQKE-N 554

Query: 552 GIFVHHAI---VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
            I  H       +   L+    +   ID+  R  L  NH+ATH+++ A   +LG H+ Q 
Sbjct: 555 NIVYHKIEGLNDDINELKEGDIVKGVIDWDRRLSLMRNHTATHVINAAAQKVLGRHIWQA 614

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           GS +  D  R D+TH K I+  ELK IE   N+I+  N  V +  M+R +A       + 
Sbjct: 615 GSDVDVDKARLDITHYKRISREELKEIERVANEIVLNNYNVKSIFMDRNEAEEKFGFRIY 674

Query: 669 --GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G    + +R+V +E E+G +     CGGTH  +TGEI  + I+    ++ G+ R+   
Sbjct: 675 QGGVVPGNVLRIVIIEDENGNIVDVQACGGTHCQNTGEIGFIKIIKTERVQDGVERLIYS 734

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVE 784
           +G  A   +   ++ L+  A  L+     +   ++  +EE+++   ++   ++K+    +
Sbjct: 735 SGLSALKAVQEMEDILEESAEILRCPSEELPKVIKRFFEEWKEQRKKIEELEKKIGELKK 794

Query: 785 DLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
               +K   V     ++ +V++  KE+ ++ D L    ++ I++L+      K ++L   
Sbjct: 795 FELMNKFERVGNYKVLVEKVEANPKEMLNIADNLA--TENTIVVLL----NDKGNILCKR 848

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            E++  + N  +L R  A       GGGR H+AQ  G    + +     V  F+K
Sbjct: 849 GENVDIKMN--ELIRYIA------KGGGREHLAQ--GKYEGEVEGIKKKVIEFIK 893


>gi|268323634|emb|CBH37222.1| alanyl-tRNA synthetase [uncultured archaeon]
          Length = 919

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/960 (23%), Positives = 391/960 (40%), Gaps = 167/960 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V  IR +FL FF+ +GH  L    ++      +    + +  F+   T G+  P    +
Sbjct: 58  SVEQIRESFLSFFESHGHTRLKRYPVVARWRDDIYLNIASISNFQPFVTAGKVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----------YFKERAIQLA 110
              Q C+R      DL+++G+T RH T FEM+G+ +F             Y+K   ++  
Sbjct: 118 VISQPCIRL----EDLESIGKTGRHLTAFEMMGHHAFNKRGEEREETGEIYWKNDTVRYC 173

Query: 111 WDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            + L                       +L   + G+        T  +  W     G  G
Sbjct: 174 DEYL----------------------RQLGVDMDGV--------TYKEAPWVGG--GNAG 201

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMS 223
           PC E+                      +E+  LVFM  +   + +          +    
Sbjct: 202 PCLEVI------------------TSGLELATLVFMDLKLSPRGQIHINGQRYDKMDTYI 243

Query: 224 IDTGMGLERMATVLQEKTNNYDI---DLFKHLIQA------------------------- 255
           +DTG GLER     +     YD    D+ K LI A                         
Sbjct: 244 VDTGYGLERFVWASKGSPTVYDAIFPDMIKELINAAGIVHPLETHHELIIENARLSGAMS 303

Query: 256 ---SEQVTGMKYEGNN-----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                +  G+  E        I +   + DH +  +F++ADGI+P+N   GY+ R ++RR
Sbjct: 304 RREIAKRFGISPEELKNILGPIESVYAVSDHTKCLAFMLADGIVPSNAKEGYLARLVLRR 363

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
           A    + L    P +  L+      + +++PEL ++   I E +  E  R+  TL +G  
Sbjct: 364 AFRILKSLDIAIP-LEELVLKQIKTLKNSFPELEESVDRIVEIVALEKRRYDDTLLKGGR 422

Query: 368 LLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
           ++  +      K + ++ D    LYDTHGLP + + ++   +G+A     +F   +    
Sbjct: 423 IVKQLAKQSKLKAQKIHLDRLINLYDTHGLPPEFVSEVASTQGVAVDIPENFYSLVASMH 482

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
              +  +L       E +   LKEK              ++ +    K+  ++P      
Sbjct: 483 GEEQKTAL-------EPLLDGLKEK--------------TQSIPATLKLYYEEPSAFEF- 520

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQIT 544
              ++V                    V+ D+T F+ E GGQ  DTG      +   L++ 
Sbjct: 521 --EAVVLDTFDD-------------FVILDKTLFFPEGGGQPADTGSLKLKEENRTLKVQ 565

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DVQ+      + H I   G +     +   ID + R   + +HSATH++  A   +LGSH
Sbjct: 566 DVQEVEG--VILHKIENGGGISKGSVVSGHIDRERRIAHTRHHSATHIVVCAARKVLGSH 623

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q G+       R DVTH K IT AE K IE   N ++ ++  +  R  +RE+A     
Sbjct: 624 VWQAGAQKGEKRARIDVTHFKRITDAERKEIELLANRMVMEDKEIQARFEDREEAEQKYK 683

Query: 665 AALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +   G      +R+V +    G       C GTH + TGE+  + I+    I+ GI R
Sbjct: 684 FQIYQGGVPPGKEIRIVRI----GEDEDVQACAGTHCTKTGEVGPIKILRTERIQDGIVR 739

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---- 778
           IE   G+ A   +  Q+E +K  A+ LKV    +   VE  +EE+++L+  + + +    
Sbjct: 740 IEYSAGEAAVVAVQAQEELIKVAAATLKVPPEKLPHTVERFFEEWKQLKKENERLRGEIA 799

Query: 779 -LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
            LQ+ +       ++ V  ++ ++ + D+K++  +   L +    G + L+   + K+AS
Sbjct: 800 TLQIGLLKDHAKDVSGVRVIAEVLPDADTKDMMKIASQLTE---DGFLTLLISERGKRAS 856

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           V+  V + L    +A +L +   +VL GG GGG+  +AQ GG      ++A+      ++
Sbjct: 857 VVSSVPKHLKAEISASELVKRVCEVL-GGSGGGKAEIAQGGGEKVEMVEEAMVAGIKLIQ 915


>gi|325959974|ref|YP_004291440.1| alanyl-tRNA synthetase [Methanobacterium sp. AL-21]
 gi|325331406|gb|ADZ10468.1| alanyl-tRNA synthetase [Methanobacterium sp. AL-21]
          Length = 905

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 217/960 (22%), Positives = 391/960 (40%), Gaps = 175/960 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  I+  F +FF+  GH  +    ++       +    + +  F+   T G  +P    
Sbjct: 52  DLYQIQKEFNDFFKARGHTPITRYPVLAKRWRDDVFLVGASIYDFQPWVTSGLVEPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M  + +F       Y+K+  ++   D + 
Sbjct: 112 LVIAQPSIRL----NDVDNVGRTGRHMTCFTMGAHHAFNKPDDEVYWKDETVKYCHDFI- 166

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     +  G+   +I   T  +++W     G  GPC EI
Sbjct: 167 --------------------------EHIGIDPSEI---TYIESWWEGG--GNAGPCYEI 195

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVF+Q++   +     +P   +DTG GLER A 
Sbjct: 196 ------------------CVRGVELATLVFIQYKTTAEG-LKEIPLKIVDTGYGLERFAW 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHR------- 273
           + Q     YD   F  +I   +++ G++                +  +I + +       
Sbjct: 237 ISQGTPTAYDAS-FGPVISQIKELAGVELNEAVLAENARIAGMMDIEDIADLKELRRRVA 295

Query: 274 ---------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                VI DH R   F++ADG++P+N   GY+ R I+RR + + 
Sbjct: 296 DKLGITMEELKNATEPMEAVYVIADHTRCLCFMLADGVIPSNVKEGYLARLILRRTIRFM 355

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + LG  E  +  ++      +   YPE+ + K  I   +  E++R+ KT+ +G  L+   
Sbjct: 356 KDLGLKES-LGDIMEIQLEFLSKTYPEIEERKQHILNVVTLEEKRYTKTVSKGKQLVKKT 414

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           +  L K+ +  +  +   KLYD+HG+P + +++I            +F   + E+    +
Sbjct: 415 IQDLKKENLEEIPVETLIKLYDSHGMPPETIEEIASEENFNAAVPDNFYTLVAEEHEAEK 474

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                            ++ K+  T+ + Y+  R ++F                     +
Sbjct: 475 KDKKQ-----------DIEIKFIETELVFYEHSRKTEF--------------------EA 503

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQK 548
            +    +               VV D+T FY E GGQ  D G     G+  +  +  V+K
Sbjct: 504 GLLGFYENN-------------VVLDRTIFYPEGGGQPSDIGYIRVKGNKEKYNVLSVEK 550

Query: 549 KAEGIFVHH---AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
             +G+ +H      +E+        +  +ID + R  L+ NH+ATHL+  A   +LG HV
Sbjct: 551 -IQGVVLHQMEPEDIEKLKPFAGSRITGSIDPERRTSLTQNHTATHLIVAAAREVLGDHV 609

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+       R D++H K I+  EL+ IE   N  + +N  V T  MNR  A      
Sbjct: 610 WQAGAQKGVKKSRIDLSHYKRISITELREIEKIANSYVMKNYQVHTSWMNRTKAEKKYGF 669

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G      +R V ++  D        C GTHV  TGEI L+ I     I+ G+ R+
Sbjct: 670 KLYQGGVVPGANIRTVKIDEID-----VQACAGTHVKYTGEIGLIKITRTERIQDGVERL 724

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E   G+ A   +   DE LK  +   KV    +    E  ++E++  +  + K K ++  
Sbjct: 725 EFSAGKSAIDAVQRNDEILKESSEIFKVPLEQLPKTCERFFKEWKAYKNENTKLKDEIAT 784

Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             +        +I+D+  ++ ++ + D  EL  ++  + + +    ++++G ++ K   V
Sbjct: 785 LKVGSIRDLAVEISDLTVLTQLM-DADMNELIGIVTDMTEDVDGVDVVVIGNTEGK--IV 841

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                + L       ++ + +A +LGGGGG GRP++AQ  G N    ++A+      +++
Sbjct: 842 GGSSAKALERGLKINNIIKDAAAMLGGGGG-GRPNLAQGAGKNHEMMEEALNSALKTIEE 900


>gi|169806523|ref|XP_001828006.1| alanyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|161779146|gb|EDQ31171.1| alanyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 817

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/804 (29%), Positives = 403/804 (50%), Gaps = 71/804 (8%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           MV FKNI  G E P+Y+ V T+Q C+RAGGKHNDLD+VG+ N HHTFFEM+GN+SFG YF
Sbjct: 1   MVQFKNIILG-ESPMYKRVNTIQHCIRAGGKHNDLDDVGKDNYHHTFFEMMGNWSFGDYF 59

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDE-EAFKLWKKISGLSADKIIRITTNDNFW 161
           KE+AIQ A++ L     LD+ RLY+T+Y+E + E+  +WKK      +KII  +  DNFW
Sbjct: 60  KEQAIQYAYEFLVDVLKLDKDRLYVTIYEEMDVESRNIWKKY--FPDEKIINGSHKDNFW 117

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
            M E GPCGPC+EI +D+           +++    IEIWN+VFM+F +  K     L  
Sbjct: 118 EMGEFGPCGPCTEIHYDRI-GNRDARNLVNKDDPNVIEIWNIVFMEFNKTPKG-LLPLEV 175

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVD 277
             IDTG+GLER+ ++L    +NY ID F ++I   E    M Y            RV+ D
Sbjct: 176 KKIDTGIGLERLLSILNNVKSNYLIDTFLNIINFIEIKCNMTYNDEENTIITTAFRVVAD 235

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336
           H R+ +  +   +  +NEGRGYVLRRI+RRA+ +A  +L   + ++  ++      +  +
Sbjct: 236 HARTLAICLYYNVSFSNEGRGYVLRRILRRAVRFASEILNINDNVLSEIVQKAAQVLNLS 295

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
                    +    +  E++ F KTL  GL+ L+ ++   GK   ++ + AF LYDT+G 
Sbjct: 296 --------SINVSVIDYEEKLFKKTLKNGLIKLNKIIEAEGK---ISSENAFLLYDTYGF 344

Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           P D+ + I   +G+  I++  F   L  Q+ +++           EK   S+K ++  T 
Sbjct: 345 PKDLTKIIAEEKGIE-INLDKFENLLNNQKKKSKG----------EKDIISIKFEFDKT- 392

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516
                                          +   ++AI+   EIV    + Q+ +++F+
Sbjct: 393 ---------------------DDKFKYTHTEIKGELQAIIFNNEIVHSLDNEQEAQLIFN 431

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQI----TDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +T FY E GGQ+GDTG        +Q+        K   G  +H+  +   I       +
Sbjct: 432 KTCFYGECGGQVGDTGTITFFDNDVQVGWFNVINTKIVRGYVLHYGKLFGKISING---L 488

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L I+   R  +  NHS+ H++   +   + ++V Q GS +      +D  +   I+ ++L
Sbjct: 489 LKINNDRRINIRNNHSSCHIIGGLIKQFISTNVEQKGSYVDEFKCTYDFNYPSKISDSQL 548

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSS 691
             +E   ND I   + +  + +++++ +      L+   +Y + +RV+ ++ +D  +   
Sbjct: 549 IELEKKANDFICSGINITVQYLSKKEVLDDPNIILMKNVEYPEPMRVIVMKSKD--LVLK 606

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTH  +  +I  + I++E+ +  G+RRI  ++G+ A        +  K++ +   +
Sbjct: 607 ELCGGTHAENLQDIKKIRIINENGVSMGVRRITLVSGKLAEECDQNVIKIKKAIENNEIL 666

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKL-QLNVEDLSCHKIADV---NFMSHIISEVDSK 807
               ++  V++   E +  +LI  + K  Q +++ L C+   ++         ++     
Sbjct: 667 PLNILLPIVDKRKFEIQYKELIKQQNKETQKHIDQLICNIKNEILNNTLAKLTLTNNKVN 726

Query: 808 ELKSVMDALQ--KKIQSGIIMLVG 829
            +K  +D  +  KK+ S II+ +G
Sbjct: 727 IIKKKIDYFKANKKVCSKIIVSIG 750


>gi|330507979|ref|YP_004384407.1| alanyl-tRNA synthetase [Methanosaeta concilii GP-6]
 gi|328928787|gb|AEB68589.1| alanyl-tRNA synthetase [Methanosaeta concilii GP-6]
          Length = 909

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 224/961 (23%), Positives = 382/961 (39%), Gaps = 180/961 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF+  GH  +    +       +  T + +  F+   T GQ  P    +
Sbjct: 60  SLDEMREHYLGFFEARGHTRIKRYPVAARWRDDIYLTIASIADFQPFVTSGQVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGR+ RH T FEM+ +  F       Y+K+R ++L  +LL  
Sbjct: 120 TISQPCIRL----DDLDSVGRSGRHLTTFEMMAHHVFNTPDREIYWKDRTVRLCDELLV- 174

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D   L +T                             +N W+    G  GP  E+ 
Sbjct: 175 GLGMDP--LAVTY---------------------------KENPWAGG--GNAGPSVEVM 203

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ-------ERFILPKMSIDTGMG 229
                                +E+  LVFM                   +    +DTG G
Sbjct: 204 V------------------GGLELATLVFMDLVAAPAGAVEIKGERYEKMKNYIVDTGYG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------------- 269
           LER           YD  +F  L++    + G+++  ++                     
Sbjct: 246 LERFVWASNGAPTIYDA-IFPDLVRQVADLAGVEHNLDDPEYAEIFAQNARLAGMVDLDE 304

Query: 270 ---VNHRV-------------------------IVDHLRSSSFLIADGILPANEGRGYVL 301
               + R                          +VDH R  ++++ DGI+P+N   GY+ 
Sbjct: 305 YSMSDLRAKIAGSIGIDPGRLEKAILPMERVYAVVDHTRCLAYMLGDGIIPSNVKGGYLS 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR +   + LG   P +  L+    + +   YP+  ++   I + L  E++++ +T
Sbjct: 365 RLVIRRTLRLMKELGLRLP-LADLVQLQISRLD--YPDWEESFATIRDILDQEEQKYAET 421

Query: 362 LDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           L++G+ L+      +L K+E +       LYDTHG+P +I ++     G       +F  
Sbjct: 422 LEKGMRLVRKTAESYLKKNEPVPLSEMIALYDTHGIPPEIAREAAVQMGAQVELPDNFYS 481

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + ++  RA                       G T+ + Y+                   
Sbjct: 482 LVAKKHIRAEPEEEKK------------PPIPGKTELLFYENP----------------- 512

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                            + E   E +   +   + D+T  Y E GGQ  D G    DG  
Sbjct: 513 ----------------FEQEFEAEVLDVVEGAAILDRTLLYPEGGGQPADHGTLEKDGQL 556

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            Q+TDVQK   G  V H + E G L     +   +D   R   + +H+ATHL+H +   +
Sbjct: 557 FQVTDVQKS--GDVVLHKLAEPGCLAKGDRVKGKVDMLRRLAHARHHTATHLVHDSAKRV 614

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H+ Q G+  + D  R D++H K IT AELK+IE   N  + + +PV T+ + R +A 
Sbjct: 615 LGKHIWQAGAQKSEDRARLDISHFKRITDAELKAIELEANRRVMELVPVDTQFLPRTEAE 674

Query: 661 ASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L   G      +RVV V            C GTHV++TG I ++ I+    ++ 
Sbjct: 675 KLFGFELYQGGVPPGKLIRVVRVGS------DIEACAGTHVTNTGMIGMIKILRAERVQD 728

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R+E   G+ A      +D+ L   A  L+V    +    E  +EE+++ Q    + K
Sbjct: 729 GVERVEFAAGEAAVRASQARDDLLAGAAGILRVPNEQLPRTAERFFEEWKEQQKEIERLK 788

Query: 779 LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
             L    L     +   ++ +  I+ ++ + ++  ++ A     +   + L+G    K  
Sbjct: 789 EDLAAARLKTLVSEAETIDGLRVIVQKMGNADIDELLKAAALLAEEDCVALLGSKTGK-- 846

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            V  V    L     A  + + +AKVLGGGGG GRP +AQ GGP+  + ++A+A     +
Sbjct: 847 LVAAVGQSGLSKGVKAGSIIKAAAKVLGGGGG-GRPQLAQGGGPDTERLEEALAAGKEAI 905

Query: 897 K 897
           +
Sbjct: 906 R 906


>gi|20094336|ref|NP_614183.1| alanyl-tRNA synthetase [Methanopyrus kandleri AV19]
 gi|19887392|gb|AAM02113.1| Alanyl-tRNA synthetase [Methanopyrus kandleri AV19]
          Length = 918

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 219/956 (22%), Positives = 392/956 (41%), Gaps = 178/956 (18%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKC 67
             F  FF+++ HE+L    ++      +  T + +  F+   T G+  P    +   Q C
Sbjct: 69  EEFFRFFERHDHEVLDRYPVVARWRDDIHLTIASIACFQPWVTSGEVPPPANPLVINQPC 128

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------YFKERAIQLAWDLLTKEFD 119
           +R     ND+DNVGRT RH T F M G+ +F          Y+KE  ++L ++   ++  
Sbjct: 129 IRL----NDIDNVGRTGRHFTLFHMGGHHAFNNHPHDRRDIYWKEETVRLCYEFTVEKLG 184

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + ++                                +++W     G  GPC E+  D 
Sbjct: 185 IPEEKI-----------------------------AFKESWWEGG--GNAGPCFEVVVDG 213

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+  LVFMQ+EQ    E   LP+  +DTG G+ER A +   
Sbjct: 214 ------------------LELATLVFMQYEQV-GGEYRELPQKIVDTGYGIERYAWITTG 254

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN------------------NIVNHRV------- 274
           +   YD  +F  L+ A+ +  G++ +G                      + RV       
Sbjct: 255 EPTAYDA-VFGDLVDATARDLGVEIDGEAREILGELARVAGLMDVETESDLRVLRNRVAR 313

Query: 275 ---------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                I+DH R  +F++ DG++P+N G GY+ R ++RRA+    
Sbjct: 314 RLDLDVNELVRVAEPVEFVYGILDHARCLAFMLGDGVVPSNAGEGYLARLVIRRALRLLD 373

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            L      ++ ++  +  ++   YPEL + +  I++ L  E +R+ + L RG   +   L
Sbjct: 374 GLDAEREYLLEVVERVLEDLRGTYPELAEREEYIQDALECEIDRYTRALKRGKKEVRKRL 433

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
              G+   L+ +   +LYD+HG+P ++ ++I    G+       F   + E+        
Sbjct: 434 EEKGE---LSFEDLVELYDSHGIPPEVAREIAEDEGVEVEVPDDFYSRVAERH----EGP 486

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +  G  E    +++E+   T+   YD  +  +F  E                   ++ 
Sbjct: 487 EEVEEGLEELERIAVEEELPETELAFYDDEKRLEFKAE-------------------VIG 527

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
                G+            VV D+T FY E GGQ  D G         ++ DVQK   G+
Sbjct: 528 TYEVNGD----------AWVVLDRTYFYPEGGGQEADRGTMRWKDGEAEVKDVQK-VRGV 576

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             H   ++  +      +   +D + R +L+ NH+ATH++  A   +LG HV Q G+  +
Sbjct: 577 VFHR--IDGDVPPEGAEVECEVDGERRMRLTRNHTATHVILEAARRVLGDHVWQAGAHKS 634

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
            D  R DVTH + I+  EL+ IE   N+I+ ++LPV  R M+R +A       L   G  
Sbjct: 635 TDEARLDVTHHRRISDEELREIERLANEIVMKDLPVNKRFMDRNEAERRYGFELYQGGVV 694

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +RVV +E       +   C GTH  STGEI  + IV    I+ G+ RI    G+ A
Sbjct: 695 PGREIRVVEIEG-----WNVQACAGTHCDSTGEIGPIKIVGRERIQDGVERIRFAAGEAA 749

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
              +   ++ L+     L+V+  N+   V+  +EE+++ +    + + +L    L     
Sbjct: 750 LERIWETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRKRIERLERELVEAKLRAAPA 809

Query: 789 --HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              ++ D       + +V+   +   ++ L K+ ++ ++++  I       V++   E  
Sbjct: 810 EGRRVGDFTVTLVELEDVEVGSVAGTVEELVKEHEN-LVLVAKIVSNGSCQVVVGSGESA 868

Query: 847 LDRFNAVDLARLSAKVL-----GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                A +L R   K++     G         +AQ GG N +   +    +   ++
Sbjct: 869 PP---AGELMREIGKLIEGGGGGDER------LAQGGGRNPDGLTE--DRLVEIVE 913


>gi|22096191|sp|Q8TWY1|SYA_METKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 915

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 219/956 (22%), Positives = 392/956 (41%), Gaps = 178/956 (18%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKC 67
             F  FF+++ HE+L    ++      +  T + +  F+   T G+  P    +   Q C
Sbjct: 66  EEFFRFFERHDHEVLDRYPVVARWRDDIHLTIASIACFQPWVTSGEVPPPANPLVINQPC 125

Query: 68  VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG--------YFKERAIQLAWDLLTKEFD 119
           +R     ND+DNVGRT RH T F M G+ +F          Y+KE  ++L ++   ++  
Sbjct: 126 IRL----NDIDNVGRTGRHFTLFHMGGHHAFNNHPHDRRDIYWKEETVRLCYEFTVEKLG 181

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + + ++                                +++W     G  GPC E+  D 
Sbjct: 182 IPEEKI-----------------------------AFKESWWEGG--GNAGPCFEVVVDG 210

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+  LVFMQ+EQ    E   LP+  +DTG G+ER A +   
Sbjct: 211 ------------------LELATLVFMQYEQV-GGEYRELPQKIVDTGYGIERYAWITTG 251

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN------------------NIVNHRV------- 274
           +   YD  +F  L+ A+ +  G++ +G                      + RV       
Sbjct: 252 EPTAYDA-VFGDLVDATARDLGVEIDGEAREILGELARVAGLMDVETESDLRVLRNRVAR 310

Query: 275 ---------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                I+DH R  +F++ DG++P+N G GY+ R ++RRA+    
Sbjct: 311 RLDLDVNELVRVAEPVEFVYGILDHARCLAFMLGDGVVPSNAGEGYLARLVIRRALRLLD 370

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
            L      ++ ++  +  ++   YPEL + +  I++ L  E +R+ + L RG   +   L
Sbjct: 371 GLDAEREYLLEVVERVLEDLRGTYPELAEREEYIQDALECEIDRYTRALKRGKKEVRKRL 430

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
              G+   L+ +   +LYD+HG+P ++ ++I    G+       F   + E+        
Sbjct: 431 EEKGE---LSFEDLVELYDSHGIPPEVAREIAEDEGVEVEVPDDFYSRVAERH----EGP 483

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
             +  G  E    +++E+   T+   YD  +  +F  E                   ++ 
Sbjct: 484 EEVEEGLEELERIAVEEELPETELAFYDDEKRLEFKAE-------------------VIG 524

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
                G+            VV D+T FY E GGQ  D G         ++ DVQK   G+
Sbjct: 525 TYEVNGD----------AWVVLDRTYFYPEGGGQEADRGTMRWKDGEAEVKDVQK-VRGV 573

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             H   ++  +      +   +D + R +L+ NH+ATH++  A   +LG HV Q G+  +
Sbjct: 574 VFHR--IDGDVPPEGAEVECEVDGERRMRLTRNHTATHVILEAARRVLGDHVWQAGAHKS 631

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
            D  R DVTH + I+  EL+ IE   N+I+ ++LPV  R M+R +A       L   G  
Sbjct: 632 TDEARLDVTHHRRISDEELREIERLANEIVMKDLPVNKRFMDRNEAERRYGFELYQGGVV 691

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               +RVV +E       +   C GTH  STGEI  + IV    I+ G+ RI    G+ A
Sbjct: 692 PGREIRVVEIEG-----WNVQACAGTHCDSTGEIGPIKIVGRERIQDGVERIRFAAGEAA 746

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC--- 788
              +   ++ L+     L+V+  N+   V+  +EE+++ +    + + +L    L     
Sbjct: 747 LERIWETEDLLRETCEVLRVNPENLPKTVKRFFEEWKEQRKRIERLERELVEAKLRAAPA 806

Query: 789 --HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              ++ D       + +V+   +   ++ L K+ ++ ++++  I       V++   E  
Sbjct: 807 EGRRVGDFTVTLVELEDVEVGSVAGTVEELVKEHEN-LVLVAKIVSNGSCQVVVGSGESA 865

Query: 847 LDRFNAVDLARLSAKVL-----GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                A +L R   K++     G         +AQ GG N +   +    +   ++
Sbjct: 866 PP---AGELMREIGKLIEGGGGGDER------LAQGGGRNPDGLTE--DRLVEIVE 910


>gi|312211276|emb|CBX91361.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 925

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/851 (27%), Positives = 377/851 (44%), Gaps = 126/851 (14%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEA 136
           RHH+F     + SFG YFK+ AI  AW+LLT+ F LD  R+Y+T ++         D+EA
Sbjct: 21  RHHSFVPP-SSASFGDYFKKEAIGYAWELLTEVFGLDPNRIYVTYFEGYAPSGLGPDDEA 79

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPG---SSEE 193
             L ++I G++ D I+     D+F  M + GPCGPC E+ +     + GG       +++
Sbjct: 80  KDLLREI-GVADDHIVAGNIKDDFREMGDQGPCGPCIELHY----ELIGGRNATHLVNQD 134

Query: 194 GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLI 253
           G   IEIW  VF+Q+ ++  +   + P   IDTG+G ER+ +VLQ KT+NYD DLF  L 
Sbjct: 135 GPDVIEIWIDVFVQYNREADKSLRLPPSKHIDTGLGFERLLSVLQNKTSNYDTDLFTPLF 194

Query: 254 QASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
              ++V          G++        +R + DH+R+S F I+DG++P N GRGY++RR 
Sbjct: 195 DKIQEVIGACSYRGRFGIEDTDGIDTAYRAVADHVRTSVFAISDGVIPNNVGRGYIVRRT 254

Query: 305 MRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           +RR   Y R     E       ++P +   MG  +PE+ + +   +      +  F K  
Sbjct: 255 VRRGAGYGRKYLNAELGSFFSKIVPTVIEHMGDTFPEIRRKETEFK------EAMFNK-- 306

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
                 +    S     + L+G   ++LYD +G P+D+ + I   +GL   D     +  
Sbjct: 307 -----YVQACQSE--GSKYLHGAYVWRLYDIYGFPIDLTKLIAEEQGLHIKD----EEVS 355

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
             QR   + +S              + ++       G+ L          ++ +CQK   
Sbjct: 356 AAQRGEKKVNSQTTVHDLASIALRKISKRSDTGDTQGHLL----------QQKVCQKHL- 404

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRL 541
                                E   G++  V+  +T FYA++GGQ  DTG  + D    L
Sbjct: 405 ---------------------EVPQGEEFGVLLHKTNFYAKSGGQQFDTGRLVIDNLAEL 443

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + +VQ   +G  +H   ++ G L     L+   D   R+ + +NH+ TH+L+ AL  +L
Sbjct: 444 DVRNVQ-SYKGYVLHTGFLKYGSLAVGDELLAEYDESRRQPIRMNHTGTHILNFALREVL 502

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-I 660
           G  V Q+GS + P+ LRFD +H   +   EL+ IE+  +  I     +    +N   A  
Sbjct: 503 GKEVEQHGSLLAPEKLRFDFSHKTGVIDEELERIEEISDKYIKDGKLLFASDVNLSTARR 562

Query: 661 ASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLY 709
             G  A+LG    D VRVVS+             +    +S   CGGTHV  T E+  L 
Sbjct: 563 KQGVRAVLGETCLDPVRVVSIGMPVENLVSDVASKGWWKYSIEFCGGTHVERTSEVQELT 622

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLM--------------------GQDEKLKSLASFL 749
           ++ E  I  GIRRI A+TGQ A                          +++++K     L
Sbjct: 623 VLEEYGIAKGIRRIVAVTGQDALEARRVASSFEAESLNPIEHMAFSFEKEKRVKEAQLQL 682

Query: 750 ----------KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
                     K     +   V+   +E +++Q       +QL V+         V+F+++
Sbjct: 683 ARIAIPTLTKKALTKRLEKVVKTTLKEQKEVQRHQFNDAIQL-VDTHFEQNSNSVSFVAN 741

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGI--SKEKKASVLIVVTEDLLDRFNAVDLAR 857
           + S+  ++ + + +  +  +     + L+G+  + EK A    V  E      NA +   
Sbjct: 742 LPSKSSARTISAAVKHISNQNYGKSVYLIGVDSATEKVAHGCYVAPEHSSKGLNANEWVA 801

Query: 858 LSAKVLGGGGG 868
             A  LGG  G
Sbjct: 802 QVAGALGGKQG 812


>gi|270010617|gb|EFA07065.1| hypothetical protein TcasGA2_TC010044 [Tribolium castaneum]
          Length = 977

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 240/863 (27%), Positives = 384/863 (44%), Gaps = 106/863 (12%)

Query: 7   IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65
           IR  FL++F  KN H  + SS ++P  DPT+ F N+GM                     Q
Sbjct: 31  IRQKFLDYFINKNNHNFIKSSPVVPFCDPTVAFVNAGMN--------------------Q 70

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+R GGKHNDL+ VG    HHTFFEMLGN+SFG YFK+ A +LAW LLT+E+ +   RL
Sbjct: 71  KCIRVGGKHNDLNVVGGDGYHHTFFEMLGNWSFGDYFKQEACELAWKLLTEEYKIHPSRL 130

Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +        DED E  ++W K  G+S D+I+  T+ DNFW M  TGPCGPC+EI  
Sbjct: 131 YVTYFKGDPVLGIDEDLETKEIW-KTIGVSEDRILPFTSKDNFWEMGPTGPCGPCTEIHI 189

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
           D            ++      E+WNLVF+Q+ +++ +   +LP+  +DTGMG ER+  VL
Sbjct: 190 DHTTSN-NRAKLVNKGLHDLTELWNLVFIQYNRKSNESVDLLPEKHVDTGMGFERLTAVL 248

Query: 238 QEKTNNYDIDLFKHLIQASEQVT----------GMKYEGNNIVNHRVIVDHLRSSSFLIA 287
           Q K +NYD D F +L++A  +            G K   +   ++RV+ DH R  +  +A
Sbjct: 249 QGKISNYDTDNFTYLLKAIHKNCSKIPEYRGTFGEKDWNSLDASYRVLADHARMVTVCLA 308

Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           D ++P    +   LRR+MRRA      +      L+  L   +   +G  YPE+ +    
Sbjct: 309 DAMIPEQNQK---LRRVMRRAFLLCENVFNKDSGLLKELSNYVIEHLGCVYPEMERNVKQ 365

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-----------------------DEILN 383
           I + +  E+E +     +       +  H  K                        + ++
Sbjct: 366 IHQIIDYEEEVYKSVRKQATEEWVKLAKHQPKLLSLDINENPSLVAGYKEISSTNPKFID 425

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
             +AFKLYDT GL  D +  +     L   +    ++ LE  + R++   L  G    E+
Sbjct: 426 AQLAFKLYDTFGLDEDSISSLAQILNLP-FNASDLHKQLELAKIRSKEQGLVSGPNVYEQ 484

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
           +  +   K   +    Y                 +K    + + +  ++  IV+  ++V 
Sbjct: 485 LTRAKVPKTDRSTLYNY----------------AKKGEKYVFDDLEVVILKIVKDSKLVR 528

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--- 560
           +  S     +V D++ FY EAGGQ+ D G         ++T+ Q    G  +H   +   
Sbjct: 529 QIESENFYGLVLDKSSFYTEAGGQISDRGAINFGDCVFEVTEAQ-DCNGYILHKGFLRSG 587

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E G ++  M+  L ID   R +   NH+A HLL+  L  + G+   Q  S +T +    D
Sbjct: 588 ESGRVKVGMTGSLKIDPDFRLKNMRNHTAVHLLNSVLKKVKGA-TCQKSSKVTQNYFNLD 646

Query: 621 V-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRV 678
           V   ++ ++  EL+ +E  +  +I   LPV    ++ +  A       + G  Y +    
Sbjct: 647 VGIFAEKLSLDELELVESTITKVIQGRLPVNISELDSQRLANLDEIILIPGEVYPETGIR 706

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V       G  S   C GTHV +T +I    IVS  S+      I  +TG RA+      
Sbjct: 707 VVEVKGGEGFLSREPCCGTHVLNTSDIEDFCIVSMKSLGRSTTSIHGVTGDRAKVAKSNG 766

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
              L +L +  K    N+        ++   L +     K QLN      + + D N + 
Sbjct: 767 THLLTNLETLEKSVSDNI--------DKPDVLNMAITSFKKQLN------YSVEDENILP 812

Query: 799 HIISEVDSKELKSVMDALQKKIQ 821
            ++ +  +  L  +   ++   +
Sbjct: 813 VVVKQQCADILNKISKQIKDSGK 835


>gi|292654386|ref|YP_003534283.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291372225|gb|ADE04452.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 922

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 225/964 (23%), Positives = 383/964 (39%), Gaps = 176/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            +  +R  FL FF+++ HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  TLEEMREKFLSFFEEHDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F    +E A              
Sbjct: 121 LTVSQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNA--REEA-------------G 161

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+      VY +DE      +    L AD I  IT  ++ W     G  GP  E+ +   
Sbjct: 162 DKYAYEGEVYWKDETVRLCDEFFESLGAD-ISEITYIEDPWVGG--GNAGPAFEVLY--- 215

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLER 232
                          R  E+  LVFM  +Q    +           +    +DTG GLER
Sbjct: 216 ---------------RGAELATLVFMSMKQDPDGDYELKDGNTYSPMDTYIVDTGYGLER 260

Query: 233 MATVLQEKTNNYD------------------IDLFKHLIQASEQVTGMKYEGNNI----- 269
              V Q     Y+                   D  + LI  + +++G             
Sbjct: 261 WTWVSQGTPTVYEAVYPDMIEFLKDNVGIEHTDEEEELIHRAAKLSGHLDIDEIDDLATA 320

Query: 270 ----------------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                  +   I DH R+ +++  DGI+P+N G GY+ R ++RR
Sbjct: 321 RAEVAGELGVDEAELTSLLRPLEDIYAIADHCRTLAYMFGDGIVPSNVGTGYLARMVLRR 380

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                  LG   P +  L+      +        Q +  I + +RSE+ ++ KTL+RG  
Sbjct: 381 TKRLVDNLGVDAP-LDELVDMQAERLDY------QNRDTIRDIVRSEERKYRKTLERGSR 433

Query: 368 LLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            +  +       DE +  D   +LYD+HG+  D++QDI   RG        F   + ++ 
Sbjct: 434 KVQQLADDYADTDEPIPLDELIELYDSHGIQPDMVQDIAEERGATVDIPDDFYSLVADRH 493

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
            +        G G  ++    L +   AT  + YD    ++F                  
Sbjct: 494 EQVD------GEGEADERDDRLGD-LPATDKLYYDDQERTEF------------------ 528

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V  + ++ E           +VV DQT FY E GGQ  D G    D   +++TDV
Sbjct: 529 --EAVVLDVFEREE---------GYDVVLDQTMFYPEGGGQPADHGSLATDDTTVEVTDV 577

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q     + +H    + G       +   +D + RR+L  +H+ATH++ HA+ T+LG H+ 
Sbjct: 578 QI-VGDVVLHRTDEDPG---KGEFVRGQLDAERRRRLMRHHTATHVIGHAIRTVLGDHIR 633

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  R DVTH   IT  E+  IE   N+I+ +N+PV     +R DA       
Sbjct: 634 QAGASKGVDRSRLDVTHYDRITREEVTQIERVANEIVMRNIPVKQEWPDRRDAEKKYGFD 693

Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L   G    +++R++ V            CGGTHV  TG+I  + +++   ++ G+ R+ 
Sbjct: 694 LYQGGIPPGEQIRLIHVGS------DVQACGGTHVKRTGDIGAVKVLTTEPVQDGVERVV 747

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NV 783
              G  A       ++ L   A  L V+  +V    E  + E+++      + K +L   
Sbjct: 748 FAAGDAAVEATQRTEDALYGAADVLDVNPADVPETAERFFTEWKERGKTIDRLKTELAEA 807

Query: 784 EDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
              +     D++    ++  +  D+ EL++  +AL   ++ G + ++G +    A  ++ 
Sbjct: 808 RAAAGADEIDIDGTPAVVQRLDGDADELRATANAL---VEEGKVAVLGSAAGGSAQFVVG 864

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQAIAGVA 893
           V +D+    NA  +    A         G+           AQ GGP+ +  D A+    
Sbjct: 865 VPDDV--GINAGQVVGRLA---------GKVGGGGGGPADFAQGGGPDVDALDGALDEAP 913

Query: 894 SFLK 897
             L+
Sbjct: 914 DVLR 917


>gi|325136739|gb|EGC59339.1| alanyl-tRNA synthetase [Neisseria meningitidis M0579]
 gi|325201730|gb|ADY97184.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325208526|gb|ADZ03978.1| alanyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 989

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 211/421 (50%), Positives = 282/421 (66%), Gaps = 14/421 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ +++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+L
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGVL 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  I E L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           R+E+ RFG+TL++G+ L + V + L  ++I   D+  K +    +  DI  D+   R   
Sbjct: 360 RAEESRFGETLEKGMGLFNQVYNELKFNQIF--DLLAKEFKVTPVE-DIDLDMFSTRNFV 416

Query: 412 G 412
           G
Sbjct: 417 G 417



 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 172/520 (33%), Positives = 259/520 (49%), Gaps = 43/520 (8%)

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           LNG+  FKLYDT+G P D+  DI   R +  +D   F + +E QR+RARA         +
Sbjct: 503 LNGEHIFKLYDTYGFPYDLTADICRERNIE-LDEAGFEREMEAQRTRARAAQ-------S 554

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
            K    L      T+F GY   +                         S V A+ + GE 
Sbjct: 555 FKANAQLPYDGQDTEFKGYSERQT-----------------------ESKVLALYKDGEQ 591

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V E   G +  +V D TPFYAE+GGQ+GD G       R ++ D QK    +F    +  
Sbjct: 592 VNELNEGDEGAIVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFGQFGVQT 651

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +  RFD+
Sbjct: 652 SGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGGHVEQKGSLVTAESTRFDI 711

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +H + +T+ E+  +E  VN+ +  N+ V   IM+ EDA  +GA  L G KY + VRV+ +
Sbjct: 712 SHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM 771

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A      Q+  
Sbjct: 772 -----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQERL 826

Query: 742 LKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----VEDLSCHKIADVNF 796
           +K + +  K   + +V+ +++      + L+   A+ K +L      + L   K      
Sbjct: 827 VKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLGAAK 886

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +     E D+  L+ ++  L  K  + +I+L  +  + K S+   V++ L  +  A DL 
Sbjct: 887 LVAAQIEADAAALREIVTDLTGKSDNAVILLAAV-NDGKVSLCAGVSKPLTGKVKAGDLV 945

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + +A+ + GG GGGRP +AQ+GG +  K    +  V  ++
Sbjct: 946 KFAAEQV-GGKGGGRPDLAQAGGTDAGKLPAVLDSVKDWV 984


>gi|298675228|ref|YP_003726978.1| alanyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
 gi|298288216|gb|ADI74182.1| alanyl-tRNA synthetase [Methanohalobium evestigatum Z-7303]
          Length = 922

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 219/970 (22%), Positives = 388/970 (40%), Gaps = 184/970 (18%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           ++ +R  FL+FF+K  H  +    +       +  T + +  F+   T GQ  P    +T
Sbjct: 60  LNEMREQFLKFFEKRDHARVNRYPVTAVWREDIHLTIASIANFQPFVTSGQVPPPANPLT 119

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q CVR     +DLD VGR+ RH T FEM+ + +F       Y+KE  + L  + L   
Sbjct: 120 ISQPCVRL----SDLDAVGRSGRHLTLFEMMAHHAFNTTDNEVYWKEETVALCDEFL-NS 174

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             +D   L +T                             +  W+    G  GPC E   
Sbjct: 175 LGVDP--LAVTY---------------------------KEEPWAGG--GNAGPCLETLV 203

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMGL 230
                               +E+  LVFM  +Q    +          +    +DTG GL
Sbjct: 204 ------------------GGLEVATLVFMNLKQSKDGDIIIDGEPYEKMNNYIVDTGYGL 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------------------- 268
           ER+    +     YD  +F  ++    +  G+++E  +                      
Sbjct: 246 ERLVWASKGTPTIYDA-IFPSIVNELMEYAGLEHELEDSEYSELLSQNARFAGLMDVSEK 304

Query: 269 ---------------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
                                      +     I DH R  +F++ DG++P+N   GY+ 
Sbjct: 305 ANLKELRKQVAESIGTSIEKLTSIMEPVEKVYAIADHTRCLTFMLGDGVVPSNVKAGYLA 364

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R + RR     R LG    +   ++     ++   YPE      LIE+ ++ E+++F +T
Sbjct: 365 RLVFRRTTRMMRELGMDISI-SDIIRMHIDKL-QEYPEFEDRFDLIEDIIQHEEDKFEET 422

Query: 362 LDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           L+RG+ ++  +     K +E +  D   ++YD+HG+P +I +D+    G+      +F  
Sbjct: 423 LNRGIKMIQKMAKQYKKQNEKIPLDKLIEMYDSHGIPPEIAEDVASDMGVEVELPDNFYS 482

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            + E+ S A+              +     K   T+ + Y+     +F            
Sbjct: 483 IVAERHSMAKEKEKPSF------PFEERISKLPQTKLLFYNEPNRMEF------------ 524

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                    ++V  +                 +V D+T FY E GGQ  D G  I D   
Sbjct: 525 --------EAVVLDVFDN-------------YIVLDRTLFYPEGGGQPADKGVIIADDET 563

Query: 541 LQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            ++ DV K  + + +H          LR    +   ID + R   + +H+ATH+++ A  
Sbjct: 564 AKVVDV-KNIKNVVLHEIDSVGNEISLRKGDLVTCKIDSERRASHAKHHTATHIVNDAAK 622

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+H+ Q G+    D  R D++H K I   E+K IE   N  + +N  VVT  +NR +
Sbjct: 623 KVLGTHIWQAGAQKFEDRARLDLSHYKRIKRDEIKRIELIANGTVMENKRVVTEWVNRNN 682

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       +   G     ++R++ V            CGGTH S TG +  + I+    I
Sbjct: 683 AEKRYGLNVYQGGVPPGKKLRILKVG------DDIEACGGTHCSYTGYVGPIKILKSERI 736

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------ 770
           + G+ R+E   G+ A   +   ++ L+  +  L+V   ++   +E  +EE+++       
Sbjct: 737 QDGVERLEFSAGEAAVKSMQEIEDTLQDSSGALRVLPEHLPNTIERFFEEWKQFKKENEK 796

Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +   A  ++Q  ++D   H    +  ++  + + DSKEL+ +   L  K  S I +L+ 
Sbjct: 797 LKEELADIRVQQMMQDAITHDGNHI--IAQKVPDSDSKELQKMAGELV-KNNSTIALLIS 853

Query: 830 ISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                   +    ++D + +  N  D+ +  + ++GGGGG GRP MAQ GG   ++ D+A
Sbjct: 854 DYNG--VKIAAAASKDAVNNGINVGDVVKEISSIVGGGGG-GRPDMAQGGGTETSRIDEA 910

Query: 889 IAGVASFLKK 898
           +      +K+
Sbjct: 911 LNTGVDRIKE 920


>gi|88601358|ref|YP_501536.1| alanyl-tRNA synthetase [Methanospirillum hungatei JF-1]
 gi|121722713|sp|Q2FQD6|SYA_METHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|88186820|gb|ABD39817.1| alanyl-tRNA synthetase [Methanospirillum hungatei JF-1]
          Length = 916

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/965 (24%), Positives = 373/965 (38%), Gaps = 179/965 (18%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             V  +R  +L FF+K GH  +    +       +  T + +  F+   T G   P    
Sbjct: 57  KTVDEMREAYLSFFEKQGHTRIDRYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANP 116

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+R ++L   LLT
Sbjct: 117 LTISQPCIRL----NDLDSVGRSGRHLTCFEMMAHHAFNSDEKEIYWKDRTVELCDQLLT 172

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                ++                               +T  ++ W     G  GP  E+
Sbjct: 173 S-LGANKE-----------------------------MVTYKEHPWIGG--GNAGPSVEV 200

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDT 226
                                 +E+  LVFM   +Q              + +    +DT
Sbjct: 201 LI------------------GGLEVATLVFMSLGKQKTEKPPIELEGTPYYPMTLRIVDT 242

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-----------------------MK 263
           G GLER     Q     YD  +F  ++    Q  G                       M 
Sbjct: 243 GYGLERFVWASQGSPTIYDA-VFPEMVSHVMQEAGFGHRLHDSDFIHILGENAKFAGLMD 301

Query: 264 YEGNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRG 298
             G  I   R                          IVDH R  S+++ D I+P+N   G
Sbjct: 302 ISGQRIFELRQKVAEKIGIPTDKLEKMIAPVESVYAIVDHTRCLSYMLGDCIVPSNAKDG 361

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y+ R ++RR +   R L   +  +  L+      +G +  E  Q   ++ E +  E +++
Sbjct: 362 YLARLVLRRTLRMMRELDLPDEKLGDLIERQMKIIGLSKFE--QDPDVVMEIVDREVDKY 419

Query: 359 GKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
             T++RG   ++ +     K  E +  D    LYD+HG+P D+++D+  ++G        
Sbjct: 420 RTTMERGARTVERLAQTYKKKCEKIPLDEIITLYDSHGIPPDMVKDLATSQGAVVDLPDD 479

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477
           F   +    S +                  ++EK        +D L     + E RK+  
Sbjct: 480 FYSRIANMHSESEQ----------------IQEKNPL-----FDYLDRLAHLPETRKLFY 518

Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIG 536
           ++P    +    + V  I                 VV DQT FY E GGQ GDTG     
Sbjct: 519 ERPG---SMEFEAKVLEIF------------DGQYVVLDQTLFYPEGGGQPGDTGLFLTP 563

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           DG+ +++ D  K  E I      ++ G +R    +   +D   R  L  +H+ATH+L HA
Sbjct: 564 DGLTVRVCDTIKLGESILH---RIDGGNVRKGDMIRGILDEDRRLSLMRHHTATHILLHA 620

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
              +LG+H+ Q G+       R D+ H K IT  ELK IE   N ++  N        +R
Sbjct: 621 AKEVLGAHIHQAGAQKGEYSSRIDIRHYKHITPEELKKIEVVANRLVMANSSTSIAWEDR 680

Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            DA       L   G     R+RVV V            C GTH + TG+I  + I+   
Sbjct: 681 TDAEQKYGFCLYQGGVPPGSRIRVVKVAG------DIEACAGTHCAHTGDIGTISIIRVE 734

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            ++ G+ R+E   G  A  H   Q++ L   A    V    +    +  ++E+++ +   
Sbjct: 735 HVQDGVERLEFAAGIAAIQHKHHQEDLLNRSAEAFSVQVEALPATSKRFFDEWKEQRKEI 794

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISK 832
            K   +++  +    +  D N +S ++  +D  + EL  V   +  K   GI +LV   +
Sbjct: 795 EKLSSRISELESKNLETVDYNGISVLVKRLDLPNPELVKVATGISDKG--GIAILVAGGE 852

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             +  V             A D+      VL GG GGG+P +AQ GGP+ +K D A+A  
Sbjct: 853 TARVVV-----SSGQKGVKAGDVISTVCAVL-GGKGGGKPTLAQGGGPDVSKIDDALAAG 906

Query: 893 ASFLK 897
            SF+K
Sbjct: 907 ESFIK 911


>gi|168704593|ref|ZP_02736870.1| alanyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 436

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 186/438 (42%), Positives = 266/438 (60%), Gaps = 21/438 (4%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
           M + S IR  F++FF +K+GH  + SS ++P NDPTL+F N+GM  FK  F G EKP   
Sbjct: 1   MLSSSEIRQQFVDFFCKKHGHTNIASSPVVPLNDPTLLFANAGMNQFKPYFLGTEKPPVV 60

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ AI  AW+LLT+ + 
Sbjct: 61  RVANTQKCIRAGGKHNDLDDVGRDTYHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWK 120

Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           LD  RL++TV++         D+EA   W K  G+  ++I      DNFW M  TGPCGP
Sbjct: 121 LDPTRLHVTVFEGDPANGIPRDDEAAGFW-KAVGVPEERIHLGNKKDNFWEMGNTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           C+EI  D+     GG P  +   ++ IEIWNLVF+QF +   Q    LP   +DTGMG E
Sbjct: 180 CTEIHIDRTPDKSGG-PLVNGGTDKVIEIWNLVFIQFNRNEDQSLTPLPAQHVDTGMGFE 238

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT--GMKYEGN----NIVNHRVIVDHLRSSSFL 285
           R+ +V+Q K++NYD D+F  L +A ++VT     Y G+        +RVI DH+R+ +F 
Sbjct: 239 RICSVVQGKSSNYDTDVFTPLFEAIQKVTLCDRPYGGDLNDLKDTAYRVIADHIRTLTFA 298

Query: 286 IADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
           + DG    N GR YVL+RI+RRA  Y   +LG  EP +  L+  +    G+A+PEL +  
Sbjct: 299 LTDGATIGNVGRDYVLKRILRRAERYGYQVLGTNEPFLYRLVDTVVEHFGAAFPELKKNP 358

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
             +++ +R E+  F +TL RG+ L + + + +  +    ++G  AFKL+DT+G+ +DI  
Sbjct: 359 HKVKDQIRDEEAAFLRTLRRGITLFNRIAAQMKDEGRTQVSGKEAFKLHDTYGVIIDITL 418

Query: 403 DILCARGLAGIDIISFNQ 420
            +   +GL  +D+    +
Sbjct: 419 QMAQEQGLT-VDVPGLKR 435


>gi|1321619|gb|AAA99922.1| alanyl-tRNA synthetase [Vibrio cholerae]
          Length = 409

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 206/399 (51%), Positives = 268/399 (67%), Gaps = 13/399 (3%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK+ F G EK  Y   TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MNQFKDCFLGLEKRAYTRATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN----- 157
           KE AIQ AW+ LT    L + RL +TVY+ D+EAF +W K  G+ AD+IIRI        
Sbjct: 61  KEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKK 120

Query: 158 ---DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNK 213
              DNFW M +TGPCGPC+EIF+D G+ I GG PGS  E+G+R+IEIWN VFMQF +   
Sbjct: 121 FDSDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHAD 180

Query: 214 QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR 273
                LPK S+DTGMG+ER++ ++Q   +NY+ID+F+ LI+A+    G  Y+     + R
Sbjct: 181 GTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIG--YQDLTNQSLR 238

Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           V+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ +   LG        L+  L   M
Sbjct: 239 VVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVM 298

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393
           G+A  EL + + L+E+ LR E+E FG+TLDRG+ +L+  L  L   ++L+G+  FKLYDT
Sbjct: 299 GTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQLS-GQVLDGETVFKLYDT 357

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           +G P D+  D+   RG + ID   F QA+EEQR RAR  
Sbjct: 358 YGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAREA 395


>gi|298368683|ref|ZP_06980001.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282686|gb|EFI24173.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1021

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 204/385 (52%), Positives = 269/385 (69%), Gaps = 11/385 (2%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYSRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           SEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 SEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +  +   + +VI DH+RS SFLI+DG++
Sbjct: 241 RMAAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDEP-SLKVIADHIRSCSFLISDGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG  +     L+P L   MG AYPEL + +  IEE L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEAL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL 376
           ++E+ RFG+TL+ GL L D  LS +
Sbjct: 360 KNEESRFGQTLETGLKLFDDELSKV 384



 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 171/555 (30%), Positives = 270/555 (48%), Gaps = 47/555 (8%)

Query: 348  EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            +  L SE + F   L+  +  L        +   L G+  FKLYDT+G P D+  D+   
Sbjct: 503  KNQLESERDDFINALELLIPQLVEC--GNTQKTTLAGETIFKLYDTYGFPYDLTADMARE 560

Query: 408  RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
             G+  +D   FN+ +E       A      +    K    L      T+F GY+      
Sbjct: 561  LGI-DLDEEGFNREME-------AQRARARAAQNFKANAQLDYTGADTEFTGYE------ 606

Query: 468  FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
                                  + + A+ +  E V+E  +G+   VV +QTPFYAE+GGQ
Sbjct: 607  -----------------KRSQETKIIALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQ 649

Query: 528  LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
            +GD G       R ++ D QK    +      V  G L+   ++   ID   R  +  NH
Sbjct: 650  VGDVGFIFAGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNH 709

Query: 588  SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
            S THL+H AL  +LG+HV Q GS    +  RFD++H + I++ E+  +E  VN  I  N+
Sbjct: 710  SVTHLMHKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANV 769

Query: 648  PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            PV    M+ EDA  SGA  L G KY D VRV+++     G +S+ LCGGTHV+ TG+I  
Sbjct: 770  PVKVETMSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGF 824

Query: 708  LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEE 766
              I+SE  I AGIRR+EAITG  A +    Q+  +K++ + +K   + +V+ +++     
Sbjct: 825  FKIISEGGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAAN 884

Query: 767  YRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             + L+   AK K +L V        S   +     ++  I E D+  L+ ++  L  K  
Sbjct: 885  TKALEKELAKAKAELAVHAGAKLLDSAKDLGAAKLVASQI-EADAAALREIVTDLTGKSD 943

Query: 822  SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            + +I+L  +  + K S+   V++ L ++  A DL + +A+ + GG GGGRP +AQ+GG +
Sbjct: 944  NAVILLAAV-NDGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTD 1001

Query: 882  GNKADQAIAGVASFL 896
              K  + +  V  ++
Sbjct: 1002 AVKLPEMLGSVEGWV 1016


>gi|309807409|ref|ZP_07701372.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308169331|gb|EFO71386.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 632

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 218/658 (33%), Positives = 344/658 (52%), Gaps = 47/658 (7%)

Query: 252 LIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           L+  +E+++ G +Y     + V  ++I DH+R+ SF IADG LP+N GRGYVLRR++RRA
Sbjct: 9   LLSKTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALPSNSGRGYVLRRLIRRA 68

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
               + LG     +  L+  +   M S YPE++  +  +E+ +++E++RF +TL  GL L
Sbjct: 69  DLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIKNEEDRFQETLSSGLNL 128

Query: 369 LDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
           LD ++S     K   L+G  AFKL+DT+G P ++  +     GL  +D   F+  ++ Q+
Sbjct: 129 LDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL-VVDKEEFDAEMKAQK 187

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
            RAR     L S  ++ I  +L      + F  + L                        
Sbjct: 188 ERARKARGNLQSMGSQDI--TLMNIKDESVFEYHQLQEDH-------------------- 225

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL--QIT 544
              + +  IV   ++V++   G++  ++FD+TPFYAE GGQ+ D G        L   + 
Sbjct: 226 ---AKLLDIVVDDKLVDQVN-GEQATLIFDKTPFYAERGGQVADHGEIFNQAGELVAHVI 281

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DVQ       +H   +    ++     VL +D Q RR L  NH+ATHLLH AL  +LG+H
Sbjct: 282 DVQHAPNDQNLHFVELV-LPMQKGEEYVLKVDEQRRRGLKHNHTATHLLHAALRQVLGTH 340

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             Q GS + PD LRFD T  +P+T  E+ ++E  VN+ I   +PV T I ++E  +  GA
Sbjct: 341 THQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEIPVKTTITDQETGLKMGA 400

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            AL G KY+++VRVV +        S   CGGTH  +T +I +L IVSES+I AG+RRI 
Sbjct: 401 LALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGMLKIVSESAIGAGMRRIV 455

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           A+TGQ+A  + +  DE LK +   +K     ++  +V  + +  R+ Q    + K Q+N 
Sbjct: 456 AVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDALREEQKTVEQLKSQINQ 515

Query: 784 EDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
              S     I D+N +  I   VD     +L+ + D  + +  S +++L      K   +
Sbjct: 516 AKASDLTDDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQNLSDVLILGTTVAGKANML 575

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + +  + +     A DL +++A + GGGGG GRP+MAQ+GG N     +A+  V + L
Sbjct: 576 ISLNDKAIKAGHKAGDLIKIAAPIFGGGGG-GRPNMAQAGGKNPAGLAKALETVLNEL 632


>gi|329120448|ref|ZP_08249113.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327461906|gb|EGF08236.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 992

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 202/385 (52%), Positives = 267/385 (69%), Gaps = 11/385 (2%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S +R  FL+FFQ  GH  + SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 31  MKTSELRQKFLDFFQSKGHTAVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 90

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+  I  AW+ LT  +  +
Sbjct: 91  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLN 150

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L +TVY ED+EA+ +W  + G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 151 IPKEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPC 210

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 211 TEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 270

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG++
Sbjct: 271 RMAAVMQGVHSNYEIDLFQDLLKAVARETGTAFSMEEP-SLKVIADHIRSCSFLIADGVM 329

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL + +  I E L
Sbjct: 330 PSNEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVL 389

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL 376
           R E+ RFG+TL++G+ L + V   +
Sbjct: 390 RGEEMRFGETLEKGMGLFNQVWDAM 414



 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/528 (30%), Positives = 258/528 (48%), Gaps = 43/528 (8%)

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                I++G+  FKLYDT+G P D+  D+    G+  +D   F + +E       A    
Sbjct: 501 ANSKLIMSGEHIFKLYDTYGFPYDLTADMARELGIE-LDEEGFEREME-------AQRAR 552

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
             +    K    +      TQF GYD                          + + V A+
Sbjct: 553 ARAAQNFKANAQVAYDGAETQFHGYD-----------------------KRSLDATVLAL 589

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            + GE V +  +G+   VV D TPFYAE+GGQ+GD G       R  + D QK    +  
Sbjct: 590 YRDGEAVNQLNAGEAGIVVLDHTPFYAESGGQVGDVGFIFSGKNRFAVEDTQKIKAAVHG 649

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H   +  G L+   S+   +D   R  +  NHS THL+H AL  +LG+HV Q GS    +
Sbjct: 650 HFGTLVSGSLKVGDSICAEVDNAVREAIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAE 709

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             RFD++H + I++ E+  +E  VN  I  N+PV    M+ EDA  SGA  L G KY D 
Sbjct: 710 LTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVETMSIEDAQKSGAVMLFGEKYGDF 769

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRV+++     G +S  LCGGTHV+ TG+I    I+SE  I AGIRR+EAITG  A +  
Sbjct: 770 VRVITM-----GDYSIELCGGTHVTRTGDIGFFKIISEGGIAAGIRRVEAITGLAALAWA 824

Query: 736 MGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----VEDLSCHK 790
             Q+  +K++ + +K   + +V+ +++      + L+   AK K +L      + L   K
Sbjct: 825 QNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKALEKELAKAKAELAVHAGAKLLDNAK 884

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
                 +     E D+  L+ ++  L  K  + +I+L  ++   K S+   V++ L ++ 
Sbjct: 885 DLGTAKLVAAQIEADAAALREIVTDLTGKSDNAVILLAAVNN-SKVSLCAGVSKPLTNKV 943

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            A DL + +A+ + GG GGGRP +AQ+GG + ++    +     ++++
Sbjct: 944 KAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQVGTMLDSAEGWVRE 990


>gi|76801007|ref|YP_326015.1| alanyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|83305852|sp|Q3ITT7|SYA_NATPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|76556872|emb|CAI48446.1| alanine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 932

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 220/967 (22%), Positives = 374/967 (38%), Gaps = 172/967 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  +R  FL FF+ + HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLEEMREAFLSFFEDHDHERIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                    D 
Sbjct: 121 LTISQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNAREDID-------------DP 163

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           DQ      VY + E      + +  L AD I  +T  ++ W     G  GP  E+ +   
Sbjct: 164 DQYAYEGEVYWKSETVAYCDQLLDELGAD-IEDVTYIEDPWVGG--GNAGPAIEVIY--- 217

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGLER 232
                          R +E+  LVFM  EQ    +  +        +    +DTG GLER
Sbjct: 218 ---------------RGLELATLVFMCMEQDPDGDYELKDGNRYSYMDTYVVDTGYGLER 262

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------------------- 270
              + Q     Y+  ++  +I   +   G+ Y                            
Sbjct: 263 WTWMSQGTPTVYEA-VYPEMISFLKDNAGLDYSDREESLVNRAARLSGKLDIDDVDDVEA 321

Query: 271 ------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                   +   I DH R+ ++++ DGI+P+N G GY+ R ++R
Sbjct: 322 ARDDIADELGVETDELRALVEPLEDIYAIADHCRTLAYMLGDGIVPSNVGTGYLARMVLR 381

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R    A  +G   P +  L+      +        + +  + + +R+E E++ +TL+RG 
Sbjct: 382 RTKRLADGVGVDAP-LDELVDMQAERLDY------ENRDTVRDIVRTEVEKYRETLERGR 434

Query: 367 VLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
             ++ +      K + +  D   +LYD+ G+  + +++I    G        F   + E+
Sbjct: 435 RHVERLAEEYAQKGDPIPLDEVIELYDSRGIQPETVEEIAADHGADVEIPDDFYSLVAER 494

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
              A A +        +     L E                       K+  ++P     
Sbjct: 495 HGEADADADDGTLAGDDDRIADLPE---------------------TEKLYYEEPERTDF 533

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
             V   V      GE V         +V  DQT FY E GGQ  DTG    D +  ++TD
Sbjct: 534 EAVVLDVIERDADGETV--------YDVALDQTMFYPEGGGQPADTGTLSTDDVAAEVTD 585

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQ+   G+ +H      G       +   ID   RR+L  +H+ATH++ HA   +LG HV
Sbjct: 586 VQET-NGVVLHRTDEAPG---KGEFVRGQIDGVRRRRLMQHHTATHIVGHAARQVLGDHV 641

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+    +  RFD+ H + I+  E+K IE   N+I+  NLPV      R +A A    
Sbjct: 642 RQAGAQKGVESARFDIRHYERISREEVKRIERVANNIVTDNLPVKQEWPKRNEAEADYGF 701

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +   G    + +R++ V            C GTHV  TG+I  + I+S   ++ G+ R+
Sbjct: 702 DIYQGGIPPGETLRLIQVG------EDVQACAGTHVLQTGDIGTIKILSTERVQDGVERL 755

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
               G  A       ++ L   A  L VS   V    E  +EE++       + K QL  
Sbjct: 756 VFAAGDAAIEATQRTEDALYDTAEVLDVSPQEVPATAERFFEEWKDRGKRIEELKEQLAE 815

Query: 784 EDLS---CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                    +  D+   + ++  V  D  +L++  +AL   ++ G + ++G S +  A+ 
Sbjct: 816 ARAHGGDGGEEVDLGGTTAVVQRVDGDMDDLRATANAL---VEDGTVAVLG-SGDDSATF 871

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQAIA 890
           ++ V +++    NA  +    A          R        P  AQ GGP+ +  D+A+ 
Sbjct: 872 VVAVPDNV--DINAGAVVGELAD---------RVGGGGGGPPDFAQGGGPDVDSLDEALD 920

Query: 891 GVASFLK 897
                L+
Sbjct: 921 AAPEILR 927


>gi|319638074|ref|ZP_07992838.1| alanyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317400719|gb|EFV81376.1| alanyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 964

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 205/387 (52%), Positives = 271/387 (70%), Gaps = 12/387 (3%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R  FL+FF+  GH ++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTT-ELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK  AI  AW+ LT  +  
Sbjct: 60  ATTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           ++ + +L  TVY ED+EA+ +W    G+ A++I+RI  N       DNFW M +TGPCGP
Sbjct: 120 NIPKDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGL
Sbjct: 180 CSEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ERMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG+
Sbjct: 240 ERMAAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEEP-SLKVIADHIRSCSFLIADGV 298

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP+NEGRGYVLRRI+RRA+ +   LG  +     L+P L  EMG+AYPEL + +  I E 
Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGAAYPELKEKQTQIMEA 358

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG 377
           LR+E+ RFG+TL++G+ L + VL+ + 
Sbjct: 359 LRAEESRFGETLEKGMGLFNQVLNGMK 385



 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 168/526 (31%), Positives = 259/526 (49%), Gaps = 43/526 (8%)

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                ++ G+  FKLYDT+G P D+  D+    G+  +D   F + +E       A    
Sbjct: 472 ANSKLVIGGEHIFKLYDTYGFPYDLTADMARELGIE-LDEAGFEREME-------AQRAR 523

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
             +  + K    L  +   T+F GY   +                         S V A+
Sbjct: 524 ARAAQSFKANAQLPYEGQDTEFKGYSERQT-----------------------ESKVLAL 560

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            + GE V+E   G +  VV D TPFYAE+GGQ+GD G       R ++ D QK    +F 
Sbjct: 561 YKDGEQVDELNEGDEGAVVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFG 620

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
              +   G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +
Sbjct: 621 QFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGEHVEQKGSLVTAE 680

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             RFD++H + +T+ E+  +E  VN+ I  N+ V   IM+ EDA  +GA  L G KY D 
Sbjct: 681 STRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSMEDAQKTGAMMLFGEKYGDE 740

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A    
Sbjct: 741 VRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWA 795

Query: 736 MGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----VEDLSCHK 790
             Q+  +K + +  K   + +V+ +++      + L+   A+ K +L      + L   K
Sbjct: 796 QEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAK 855

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
                 +     E D+  L+ ++  L  K +  I++LV +  + K S+   V++ L  + 
Sbjct: 856 DLGAAKLVAAQIEADAAALREIVTDLTGKSEQAIVLLVAV-NDGKVSLCAGVSKPLTGKV 914

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A DL + +A+ + GG GGGRP +AQ+GG + +K  + +  V  ++
Sbjct: 915 KAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLPEMLVSVEGWV 959


>gi|91774109|ref|YP_566801.1| alanyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
 gi|121689045|sp|Q12U25|SYA_METBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|91713124|gb|ABE53051.1| Alanyl-tRNA synthetase [Methanococcoides burtonii DSM 6242]
          Length = 923

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 205/965 (21%), Positives = 381/965 (39%), Gaps = 178/965 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
            +R  +L FF++ GH  +    +I      +  T + +  F+   T GQ  P    +T  
Sbjct: 62  DMREFYLNFFEEQGHTRIERYPVIARWRDDIYLTIASIADFQPFVTSGQVPPPANPLTIS 121

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q C+R     +DLD VG++ RH T FEM+ + +F       Y+KE  ++L   LL     
Sbjct: 122 QPCIRL----SDLDAVGKSGRHLTTFEMMAHHAFNTKNEEIYWKEHTLELCDGLL-NSLG 176

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D                              + +T  +  W+    G  G C E+    
Sbjct: 177 ADP-----------------------------MAVTYKEEPWAGG--GNAGACVEVLI-- 203

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMGLER 232
                             +E+  LVFM  ++    +          +    +DTG GLER
Sbjct: 204 ----------------GGLEVATLVFMNLKKDKNGDIDIKGDMYSKMENYIVDTGYGLER 247

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------------------------ 268
           +    +     YD  +F  ++     + G+++E  N                        
Sbjct: 248 LVWASKGSPTIYDA-IFPSIVNELMGLAGIEHELENNEYSHILSQNARLAGLMDISEKAN 306

Query: 269 -------------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
                                    + N   I DH R  +F+I DGI+P+N   GY+ R 
Sbjct: 307 LLELRKQVAASIGITADKLSSIMEPVENVYAIADHTRCLTFMIGDGIIPSNVKAGYLARL 366

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR +   + LG   P+   ++      +   YPE  +   +I++ L  E+ +F +TL+
Sbjct: 367 VIRRTLRMMKDLGIMIPI-SEIIQMHINNL-PEYPEFQKRFDVIKDILEHEERKFAETLE 424

Query: 364 RGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422
           RG  +++    H  +  E +  +    +YD+HG+P +I + +    G+      +F   +
Sbjct: 425 RGRRMMEKSARHYKESGEKMPLETIIDMYDSHGIPPEISKAVASDVGVEVDLPDNFYSLV 484

Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482
            ++ S++      +        +     +   T+ + YD      F              
Sbjct: 485 ADKHSQSEEKEEKV------VPFADKIARLPKTKRLFYDEPNRMDF-------------- 524

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542
                  ++V  +                 +V D T  Y E GGQ  D G    + + L+
Sbjct: 525 ------DAVVLEVFDN-------------HIVLDNTLMYPEGGGQPADHGTLTVEDVVLK 565

Query: 543 ITDVQKKAEGIFVHHA--IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + D Q   +G+ VH    I +   +R    +V  ++ + R   + +H+ATH+++ A   +
Sbjct: 566 VVDTQMY-DGVVVHTINEIEDELHIRKGDMVVGRVNEKRRMAHARHHTATHIINDAAREV 624

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LGSH+ Q G+    D  R D++H K IT  E   IE   N  + +N  +++  M+R +A 
Sbjct: 625 LGSHIWQTGAQKFADRARLDISHYKRITQEEANQIEIIANHTVMKNKRIISDWMDRTEAE 684

Query: 661 ASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L   G      +RV+ V            C GTH ++TG +  + I+    I+ 
Sbjct: 685 QKYGFRLYQGGVPPGKMIRVLQVGN------DIEACAGTHCTNTGLVGPIKILKTERIQD 738

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R+E   G+ A   +   +  ++  +  L+VS   +   +E  ++E+++L+  + K K
Sbjct: 739 GVERLEYAAGEAAIIAMQDIETLVRDSSETLRVSAEQLPSTIERFFDEWKELKKENNKLK 798

Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            +L    +         +  +  ++  I   DS+EL      L +  +S ++ ++    +
Sbjct: 799 EELAHSRVSQLVNDAEDVNGIRIITKAIPHADSEELTKTAGELTQ--ESNVVAILISEMD 856

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
               V     + +    N   + +  + ++GGGGG GRP+MA+ GG + +  D A++   
Sbjct: 857 GVKIVATAGDDAVKRGVNVGAIVKEMSTMVGGGGG-GRPNMARGGGTDPSGMDNALSRSV 915

Query: 894 SFLKK 898
             LK+
Sbjct: 916 ELLKE 920


>gi|217033203|ref|ZP_03438652.1| hypothetical protein HPB128_150g3 [Helicobacter pylori B128]
 gi|216945067|gb|EEC23779.1| hypothetical protein HPB128_150g3 [Helicobacter pylori B128]
          Length = 496

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 209/517 (40%), Positives = 304/517 (58%), Gaps = 31/517 (5%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FF   GH + PS  L+P ND TL+FTN+GMV FK+IFTG           + 
Sbjct: 2   DIRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ N      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L++   ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           I+RRA+ +  L+G  E  +  ++  +C +  + +  L ++K ++ +    E+ERF +TL+
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLETLE 358

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
            G+ L +  L HL +++I +G +AFKLYDT G PLD+  D+L + G A +D+  F   ++
Sbjct: 359 SGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENCMQ 417

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           EQ  R++A   G  +      + ++   Y    F+GY+                      
Sbjct: 418 EQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECP----------------- 457

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
                + ++       + + EA   Q+V V+ ++  F
Sbjct: 458 -----AKVLGFFDSDFKEITEANPNQEVWVLLEKPLF 489


>gi|312136375|ref|YP_004003712.1| alanyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
 gi|311224094|gb|ADP76950.1| alanyl-tRNA synthetase [Methanothermus fervidus DSM 2088]
          Length = 908

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 217/954 (22%), Positives = 380/954 (39%), Gaps = 172/954 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  +   FL+FF+K GH+++P   ++       +    + +  F+   T G   P    
Sbjct: 66  DLYELEKLFLKFFEKKGHKIIPRYPVVAKRWRDDVFLVGASIYNFQPWVTSGIVDPPANP 125

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M G+ +F       Y+K   I+  ++ L 
Sbjct: 126 LVVSQPSIRL----NDIDNVGRTGRHFTCFTMGGHHAFNKEDKIIYWKNETIKYCYEFL- 180

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     +  G+S  KI   T  +++W     G  GPC E+
Sbjct: 181 --------------------------QTLGISPKKI---TFIESWWEGG--GNAGPCYEV 209

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LVF+QF+     +   +P   +DTG GLER A 
Sbjct: 210 CVDG------------------VELATLVFIQFK--TNGKLEDIPLKIVDTGYGLERFAW 249

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----------------------------- 266
           V Q     YD  +F   I   + +TG+  +                              
Sbjct: 250 VSQGTPTAYDA-VFPQFIDKLKDITGVSVDKRLLKENARIAGLMDIETESDLMKLRKKVA 308

Query: 267 ----------NNIV----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                     NNI+    N   I DH R  +F+++DG++P+N G GY+ R ++RR +   
Sbjct: 309 NKLNISVDKLNNIIGPMENIYAIADHTRCLTFMLSDGVIPSNMGEGYLARLVLRRIIRLM 368

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             L    P +  ++      +   YPE+ +    I   +  E++R+ KT+ +G   +  +
Sbjct: 369 DELNLNMP-LKKIMEIQIDILSKHYPEIEKHYDHILNVVELEEKRYSKTISKGKKTVKRI 427

Query: 373 LSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           ++ L       +      KLYD+ G+P +++++I    G++     +F   + EQ     
Sbjct: 428 INDLKRKNKNKIPLKTLIKLYDSKGVPPELVREICKKEGISVELPDNFYTLVAEQ----- 482

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
            H         EKI   L E    T+ + Y+                             
Sbjct: 483 -HEGKKTKEKGEKIDLDLPE----TKLLFYEKP--------------------------- 510

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                 ++     + +   K  V+ D+T FY E GGQ  D G  + +G +  + +V K  
Sbjct: 511 ------KEKRFNAKIIGSYKNSVILDKTLFYPEGGGQPSDRGYLVVNGKKFYVKNVTK-V 563

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             I +H    +        ++   ID++ R +L+ NH+ATH+L  +   ILG HV Q G+
Sbjct: 564 NNIILHELDTDNVENLVGKNVEGIIDWERRVKLTRNHTATHILLASARKILGDHVWQAGA 623

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
                  R D++H K ++  E+K IE   N+ + +N+ V  + M+R+ A       L   
Sbjct: 624 KKGIKASRLDISHYKRLSRDEIKKIEKLANEYVRKNIKVNVKWMDRQAAEKKYGFILYQG 683

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G     ++RVV +   D        C GTHV  TG+I  + I     I+ G+ R+E   G
Sbjct: 684 GVIPGSKIRVVEIPGVD-----VQACAGTHVEYTGDIGFIKINRTERIQDGVERLEFSVG 738

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786
             A   +   ++ L   A   +V    +    +  +EE+++   ++   K ++       
Sbjct: 739 DSAVDFVQHYEDLLLKSAQIFRVEPQILPKTCKRFFEEWKQFKNEIERLKEEIAKLKIKT 798

Query: 787 SCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
              KI  +N +  +  E+D   KEL+++     K         V +  + K  V++V  +
Sbjct: 799 IKSKIKKINDLKVVCEELDASMKELETIASEFIKDGTD----FVLLGNKNKNLVIMVSKK 854

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +     A +  +   +  GGGGG GR ++A+            +  V   ++K
Sbjct: 855 SIEKGIKANEFMKKITEKFGGGGG-GRENIARGAIK--ENIRNILEFVYKIIEK 905


>gi|329737303|gb|EGG73557.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 552

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 192/583 (32%), Positives = 308/583 (52%), Gaps = 40/583 (6%)

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DE 380
           M  L+  +   M   YP +      I+  ++SE+ERF +TL+ GL +L+ ++      D+
Sbjct: 1   MYKLVDIVADIMEPYYPNVKDKSNFIKRVIKSEEERFHETLEEGLTILNELIKEAKNSDQ 60

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           ++ G  AFKLYDT+G P+++ +++     L+ +D+ +F Q +++QR RAR       S  
Sbjct: 61  VIKGHDAFKLYDTYGFPIELTEELATQENLS-VDMPTFEQEMQQQRDRARQARQNSQSMQ 119

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            +     LK     +QF+GY+                            S++  I+  GE
Sbjct: 120 VQSEV--LKNIQDESQFVGYETTDY-----------------------QSLITHIIYNGE 154

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V+   +G+ +  +  +TPFYA +GGQ+ D G    +   + +TDV K   G  +H  IV
Sbjct: 155 EVKHVEAGETIYFILRETPFYAVSGGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIV 214

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           + G       +   ++ ++RR +  NHSATHLLH AL  +LG HV+Q GS + P+ LRFD
Sbjct: 215 QFGEATQNAKVEARVNKEDRRLIQKNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFD 274

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +H  P+T  E+  +E  VN+ I + + V  + M+ E+A + GA AL G KY D VRVV+
Sbjct: 275 FSHFGPMTQEEINLVERRVNEEIWRAIDVCIQEMSIEEAKSIGAMALFGEKYGDIVRVVN 334

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +        S  LCGG HV++T EI L  IVSES   AG+RRIEA+TG+ A  HL   + 
Sbjct: 335 MAP-----FSIELCGGIHVNNTAEIGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIET 389

Query: 741 KLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADV 794
           +  ++ + LKV   N VV +V+++ EE + L     +R      L++   +     I ++
Sbjct: 390 QFNNIKNHLKVKSDNQVVEKVKQLQEEEKGLLKQLEQRNKEITSLKMGNIEEQVELINNL 449

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++  +   + K ++S MD  + K+Q  II+LVG   + K SV+  V + L ++  A D
Sbjct: 450 KVLATEVEIPNPKAIRSTMDDFKSKLQDTIIVLVGQV-DGKVSVIATVPKSLTNQVKAGD 508

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L +    ++ GG GGGRP MAQ GG    K  +A+  +  ++K
Sbjct: 509 LIKNMTPII-GGKGGGRPDMAQGGGTQPEKITEALRFIKDYIK 550


>gi|313124848|ref|YP_004035112.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312291213|gb|ADQ65673.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 922

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/964 (22%), Positives = 383/964 (39%), Gaps = 174/964 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            +  +R  FL FF+++ HE +    +        ++ T + +  F+ + T GQ  P    
Sbjct: 61  TIEEMREEFLSFFEEHDHERIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGQTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F    +                 
Sbjct: 121 LTISQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNAREEVD--------------- 161

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           DQ      VY +D       +    + AD +  IT  ++ W     G  GP  E+ +   
Sbjct: 162 DQYAYSGEVYWKDRTVELCDEFFEHMGAD-LEEITYIEDPWVGG--GNAGPAFEVLY--- 215

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLER 232
                          +  E+  LVFM  EQ  + E           +    +DTG GLER
Sbjct: 216 ---------------QGAELATLVFMSMEQDPEGEYEMKDGNRYSPMDTYIVDTGYGLER 260

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMK---------------------------YE 265
            A V Q     Y+  ++  +IQ  ++  G+                            YE
Sbjct: 261 WAWVSQGTATVYEA-VYPDMIQFLKENAGISLTAEEEELVHRAAKLSGYLDIDEVDDVYE 319

Query: 266 GNNIV-------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
               +                   +   I DH R+ +++  DGI+P+N G GY+ R ++R
Sbjct: 320 ARVDIADELGVDADELAELLRPLEDIYAIADHCRTLAYMFGDGIVPSNVGTGYLARMVLR 379

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R       +G   P +  L+      +        Q +  I + +R+E+ ++ +TL+RG 
Sbjct: 380 RTKRLVDSVGVDAP-LDELVDMQAERLEY------QNRDTIRDIVRTEERKYRETLERGT 432

Query: 367 VLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
             +  +      ++E +      +LYD+HG+  D++ DI   RG       +F   + ++
Sbjct: 433 RKVQSLADDYADREESIPVTELIELYDSHGIQPDMVADIAEERGATVDVPDNFYSLVADR 492

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
                    G G+    +           T+ + YD    ++F                 
Sbjct: 493 H-------EGEGATEAAEEREERLADLPDTEKLYYDDQERTEF----------------- 528

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                       +  +++     +  +VV DQT FY E GGQ  D G    D   +Q++D
Sbjct: 529 ------------EAVVLDVIEREEGYDVVLDQTMFYPEGGGQPADHGTISTDDKTVQVSD 576

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQ + +G+ +H    + G       +   +D + RR+L  +H+ATH++ HA   +LG H+
Sbjct: 577 VQIR-DGVVLHRTDEDPG---KGEFVRGQLDVERRRRLMRHHTATHVVGHAARQVLGDHI 632

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+    D  RFD+TH + IT  E+K IE   N+I+ QN+ V     +R +A      
Sbjct: 633 RQAGAQKGTDRARFDITHYERITREEVKQIEQVANEIVMQNIAVKQEWPDRHEAEDKYGF 692

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G      +RV++V            CGGTHV  TG+I  + I++   ++ GI RI
Sbjct: 693 DLYQGGIPPGRNIRVITVG------DDVQACGGTHVKRTGDIGSIKILTTEPVQDGIERI 746

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
               G  A       ++ L   A  L V+  +V    E  + E+++      + K +L  
Sbjct: 747 VFAAGDAAIEATQETEDALYEAAEVLDVNPEDVPDTAERFFTEWKERGKTIDRLKSELAE 806

Query: 784 EDLSCHKIA-DVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
              +      DV+    ++  +  D+ EL++  +A+   +  G + ++G +    A  ++
Sbjct: 807 ARAAAETEEIDVSGTPAVVQRLDGDADELRATANAI---VDEGKVAVLGSAAGGSAQFVV 863

Query: 841 VVTEDLLDRFNAVDLARLSAKVL------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            V +++    NA ++    A  +              P  AQ GGPN  K D+ +     
Sbjct: 864 GVPDNV--GINAGEVVGQLAASVGGGGGGP-------PDFAQGGGPNVEKLDETLDEAPD 914

Query: 895 FLKK 898
            L++
Sbjct: 915 VLRQ 918


>gi|300709606|ref|YP_003735420.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299123289|gb|ADJ13628.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 921

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/965 (22%), Positives = 381/965 (39%), Gaps = 177/965 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++  +R  FL FF+++GHE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLEEMREKFLSFFEEHGHERVEPYPVAANRWRDDVLLTQASIYDFQPLVTSGKTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                  +   
Sbjct: 121 LTISQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNTR--------------DDVPE 162

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+   Y  VY +D          + L AD    IT  ++ W     G  GP  E+ +   
Sbjct: 163 DEYAYYGEVYWKDRTVEYCDDFFTSLGADP-EEITYIEDPWVGG--GNAGPAIEVIY--- 216

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGLER 232
                          R +E+  LVFM  EQ  + +  +        +    +DTG GLER
Sbjct: 217 ---------------RGVELATLVFMCMEQDPEGDYELKDGNRYSYMDTYIVDTGYGLER 261

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------------------- 270
              V Q     Y+  ++  +I       G+ +                            
Sbjct: 262 WTWVSQGTPTVYEA-IYPEMIDFLTDNAGITHTDEEAALLHSASKLAGHMDIDEAEDMES 320

Query: 271 ------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                       I DH R+ ++++ DGI+P+N   GY+ R ++R
Sbjct: 321 ARGEIAAGVGVDVGELEALMEPMEAVYAIADHCRTLAYMLGDGIVPSNVATGYLARMVLR 380

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R       +G   P +  L+      +G       + +  I + +R+E E++ +TL+RG 
Sbjct: 381 RTKRLCDTVGVDAP-LDELVDMQAERLGY------ENRDTIRDIVRTEVEKYRETLERGG 433

Query: 367 VLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
             ++ +     + DE +  +   +LYD+HG+  D++++I    G        F   +   
Sbjct: 434 RRVEQLAEEYAQRDEPIPVEELLELYDSHGIQPDMVEEIATEAGATVEVPDDFYSLV--- 490

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
              A  H  G     TE+    + +    T+ + YD    ++F                 
Sbjct: 491 ---AGRHDAGEAMRETEERDERVVD-LPDTEKLYYDDAERTEF----------------- 529

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                       +  I++     +  +VV DQT FY E GGQ  D G    D     ++D
Sbjct: 530 ------------EAVILDVIERAEGYDVVLDQTMFYPEGGGQPADHGMISTDDGSYTVSD 577

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQ++ EG+ +H    E         +   +D + RR+L ++H+ATH++ HA   +LG H+
Sbjct: 578 VQER-EGVVLHRVSEEP---EKGALVRGRVDPERRRRLMVHHTATHIVGHATREVLGEHI 633

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+    D  R DV H   I   ++K IE   N+++  N+ V     +R +A A    
Sbjct: 634 RQAGAQKGTDSARLDVRHYDRIGREQVKEIERIANELVRDNVTVSEEWPHRNEAEAEHGF 693

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G    +R+R++ +            CGGTHVS TG+I  + +VS   I+ G+ R+
Sbjct: 694 DLYQGGIPPGERIRLIHIA------EDVQACGGTHVSRTGDIGAIKVVSTERIQDGVERL 747

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
               G  A       ++ L   A+ L VS   V    E  +EE++           +L  
Sbjct: 748 TFAAGDAAIEATQETEDALYEAAAILDVSPPEVPATAERFFEEWKARGKEIESLTEELAE 807

Query: 784 EDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                 +  +V   + +I  VD+   EL++  +AL ++ +   + ++G +    A  ++ 
Sbjct: 808 LRAGEGEAVEVGGTTAVIQRVDADSDELRATANALVEQGK---VAVLGSASNG-AQFVVA 863

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQAIAGVA 893
           V E +    NA ++    A          R           AQ GGP+ ++ D+A+A   
Sbjct: 864 VPEGV--GINAGEVVGTLAS---------RVGGGGGGPADFAQGGGPDTDELDEALADAP 912

Query: 894 SFLKK 898
             LK+
Sbjct: 913 GILKE 917


>gi|119719139|ref|YP_919634.1| alanyl-tRNA synthetase [Thermofilum pendens Hrk 5]
 gi|189082116|sp|A1RWQ1|SYA_THEPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119524259|gb|ABL77631.1| alanyl-tRNA synthetase [Thermofilum pendens Hrk 5]
          Length = 907

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/951 (23%), Positives = 389/951 (40%), Gaps = 159/951 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S+ R  F++FF+K  H  +    ++      +    + +  F+   T G   P    +
Sbjct: 60  SLSATRKMFIDFFEKRNHTPVKRYPVVARWREDVYLVGASIYDFQPWVTEGLVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLTK 116
              Q  +R      DLDNVG+T RH T FEM+ + +F       Y+    ++ A+++LTK
Sbjct: 120 VISQPSIRL----TDLDNVGKTGRHLTGFEMMAHHAFNIRDQRVYWANETVEYAFEVLTK 175

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + +    +                             T   + WS    G  G   E+ 
Sbjct: 176 VYGVKPEEI-----------------------------TFIFDMWSGG--GNAGEDYEVI 204

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM ++         +    +DTG GLER+  +
Sbjct: 205 V------------------RGLEVATLVFMHYKTAEDGSLIPIENRIVDTGYGLERIYWL 246

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-------------------------- 270
           L    N Y+  +F  +I    +++G++   ++++                          
Sbjct: 247 LTGHYNVYEA-VFSGVIDRLRKLSGVEKPPDDLMYRLALKSGRLDFKKPLEALETLRNVS 305

Query: 271 ------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                 + DH R+ ++++ DG++P+N G GY+  R++ R     
Sbjct: 306 REVGISFEELQRVLEPNEALYALADHTRTIAWMLGDGVVPSNSGAGYLA-RLLIRRSLRL 364

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
                 E  +  ++        + +PE ++ +  I + + +E+ERF +++ RG  +L  +
Sbjct: 365 LRRLQLELPLSEIVLWQIQYWRNDFPEYLELQDEIRDIVDTEEERFEESVKRGEKVLGAL 424

Query: 373 LSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           L  L      ++  +   KLY++HG+P +++++   + GL   DI  F   L E RSRA+
Sbjct: 425 LGELKSKGLRVVPAEEIVKLYESHGVPPELVKEKAESEGLEA-DITGFYSRLAEMRSRAQ 483

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                        +  S  +++  T+ + Y+  + ++F                     +
Sbjct: 484 VQQK---EALQLPLDPSRLKEFRPTRLLYYENEKLAEF--------------------EA 520

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            V  ++                VV D T FY E GGQL DTG  + +G   ++    K  
Sbjct: 521 TVLGVLDGK------------YVVLDSTAFYPEGGGQLSDTGVLVYEGGECRVKYAFK-V 567

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             I VH    E         +   +D + R  L  +H+ATH++  AL ++LG HV Q G+
Sbjct: 568 GDIVVHEC--EGNAPPVGARVKGVVDMERRLALMRHHTATHIVLGALRSVLGKHVWQAGA 625

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
             TPD +RFD TH K IT  + K+IE   N ++ ++ PV   ++NR +A  +    L   
Sbjct: 626 QKTPDYVRFDFTHHKAITPEQAKAIEALANRVVMEDRPVRKYLLNRTEAEKAFGFTLYQG 685

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G      +RVV +   D        CGGTH   TGEI L+ I+    I+ G+ R+    G
Sbjct: 686 GAVPQTTLRVVEIPGWDA-----EACGGTHCDRTGEIGLIKILGFEKIQDGVVRVVFKAG 740

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A  ++ G  +KLK+L   L  S   +  + + +      L+    K + +L    +S 
Sbjct: 741 MPALEYVQGMGDKLKNLQEILDASYEGLEEKAKSLKSRIEALEKEVKKLREELLKGGVSV 800

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +A V  +   +   D  E +    A+ +   S +I+    +   K +  + VT+DLLD
Sbjct: 801 SPVATVQGVQVYVYFSDEYEPREAALAISRTRTSSVIL----AYNSKGNFALKVTDDLLD 856

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI-AGVASFLKK 898
           R +A ++ R   + L G GGG R  + Q         D+ I   +   L++
Sbjct: 857 RLDAREIGRSVCESLRGKGGGVR-DLYQGRIDETKSVDKVIVEALRQALER 906


>gi|145592424|ref|YP_001154426.1| alanyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
 gi|205830186|sp|A4WN07|SYA_PYRAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145284192|gb|ABP51774.1| alanyl-tRNA synthetase [Pyrobaculum arsenaticum DSM 13514]
          Length = 892

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 218/933 (23%), Positives = 362/933 (38%), Gaps = 168/933 (18%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + +++ +R  FL FF++ GH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  VDSLTELRERFLRFFERRGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   + A++  
Sbjct: 114 PLVISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTEYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T                          K  G++ ++I   T  ++ W     G  G C E
Sbjct: 170 T--------------------------KELGITPEEI---TFKESMWEGG--GNAGECYE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                    R +E+  LVFM +E +   +   LP   +DTG GLER+ 
Sbjct: 199 VLV------------------RGLEVATLVFMHYETKE-GKYVELPLKIVDTGYGLERIY 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------ 270
            +L+     YD  +F   +  + Q  G+      ++                        
Sbjct: 240 WLLKGTPTIYDA-VFGPFLDRARQKLGVPEPPAEVMGKASIYFGQMDPEVIGLEKAYDLI 298

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                 V+ DH R+ S++IADG++P+N G GY+ R ++RR +  
Sbjct: 299 AEKIGVDGKWLREVFRPQEALYVLADHSRTVSWMIADGVIPSNSGAGYLARLLIRRILKN 358

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            +L G   P ++ L+     E+   YPE+  A+ LI E +  E+ ++ + L     ++  
Sbjct: 359 LKLAGIEAP-LVELIDMHLKELKVDYPEVWAARDLILELVDLEERKYKEILKSAPTVVKK 417

Query: 372 VLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
            L    +     L+ D    LYD+ GLP +I+ D+   +G+       F   L  + ++ 
Sbjct: 418 ALDEARRRGAASLSPDDLVALYDSFGLPPEIVADVAKTQGVEVKVPDDFYSRLAARHAKK 477

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                       + I                DL R  +   ED  +   K          
Sbjct: 478 EKQPESTLVEMAKVI----------------DLPRTRELFYEDPYMRSFKAK-------- 513

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                       V   V G+   VV DQT FYAE GGQ GD G     G   ++ DVQ+ 
Sbjct: 514 ------------VLRVVDGK--YVVLDQTAFYAEGGGQPGDVGVLKYSGGAAKVVDVQR- 558

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I VH  +VE       + +V  ID++ R  L   H+ TH+L  ++  +LG H+ Q G
Sbjct: 559 VGHIIVH--VVEGQPPPEGVEVVGEIDWERRYALMKMHTGTHVLIQSIRRVLGPHIWQAG 616

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +       R DVTH K  T  E+  IE   N  +  NLPV  +IM R +A A     L  
Sbjct: 617 AQKDIPSSRLDVTHYKLPTPEEVAEIERLANSAVQANLPVYVKIMPRNEAEAKYGFILYQ 676

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G      +RVV +   D   +    CGGTH+ STGEI ++ I     I  G+ R    T
Sbjct: 677 GGVVPAREIRVVQIG-PDSDPYDVQACGGTHLKSTGEIGIIKIQKVERIADGVVRFIFTT 735

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVE 784
           G  A S++   + +L   A     S+ NVV  V+ +     + +     +A+   +   +
Sbjct: 736 GLHALSYIQELERQLGQAAQVAGGSRDNVVEAVKRLASRAEEAERKWRHYAELYAKQMAQ 795

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            L   ++        ++   D    K V +    + +  +++++G     K S+     +
Sbjct: 796 SLKAEQVGRYKL--AVVELDDEDLAKKVAEEATGRDKDLVLVVMG---GNKLSIFTGGAD 850

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                     + +   +V  G  GGG    AQ 
Sbjct: 851 VAP-------IVKSLREV--GFRGGGSRTFAQG 874


>gi|327400660|ref|YP_004341499.1| alanyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
 gi|327316168|gb|AEA46784.1| alanyl-tRNA synthetase [Archaeoglobus veneficus SNP6]
          Length = 903

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/962 (22%), Positives = 378/962 (39%), Gaps = 187/962 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           N+  +R  +L FF+K GH  +    ++      +  T + +  F+   T G   P    +
Sbjct: 60  NLDEMREYYLSFFEKRGHARIDRYPVVARWRDDIYLTIASIADFQPFVTSGVAPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD+VGRT RH T FEM+ + +F       Y+K   ++L  +LL  
Sbjct: 120 TISQPCIRM----DDLDSVGRTGRHLTLFEMMAHHAFNYPEKEIYWKNETVKLCTELL-- 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                    +  G+  + +I     +  W+    G  GPC E  
Sbjct: 174 -------------------------EELGVPKENVI---YKEEPWAGG--GNAGPCLE-- 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
                 I GG           +E+  LVFM  E     +          +    +DTG G
Sbjct: 202 -----AIVGG-----------LELATLVFMNLEVSPDGDIEIKGERYRKMDNYIVDTGYG 245

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV------------- 276
           LER     Q     YD  +F  ++   E+ + + +   +    R+I              
Sbjct: 246 LERFVWASQGTPTVYDA-IFPEVLDFIEENSNISFSRKDEEVRRIIAESSKLAGVMSSLR 304

Query: 277 ------------------------------------DHLRSSSFLIADGILPANEGRGYV 300
                                               DH R+  F++ DG++P+N G GY+
Sbjct: 305 GKALEEFRLNAANRLGISVDELVSIVSPLEKVYALADHTRTILFMLGDGLIPSNAGGGYL 364

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR++  A  L  +  L   L+      +     E+      I+E L  E++R+  
Sbjct: 365 ARLMIRRSLRLAEELNLSATLF-DLVELHRRLLKPFTFEIP--METIQEILELEEKRYRA 421

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420
           T+++GL +++ V++   K + +  D   + YD+HG+P +++  I   +G+       F  
Sbjct: 422 TIEKGLRMVERVVA---KKKRIEKDDLIEFYDSHGIPAELVAKIAEEKGVEVEMPEDFYA 478

Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480
            L  +  +A           T          Y  T+ + YD                   
Sbjct: 479 ELASRHVKAEKKEEEKKLKGT----------YPPTEKLYYDSSVL--------------- 513

Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
                              E   E +  +   V+ D+T FY E+GGQ  DTG  I +  +
Sbjct: 514 -------------------EFEAEVIGVEGEYVILDRTAFYPESGGQDNDTGYFIVNSTK 554

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           + + DV ++  G+ VH     +G L     +   ID   R + + +HSATHLL +A+  +
Sbjct: 555 IPVVDVFEE-NGVVVHKI---KGSLSAGTKVKGIIDRGRRLRHTRHHSATHLLLYAIQQV 610

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG H  Q+G+    +  R DVTH K  +  E+  IE   N  +  N PV    M+R +A 
Sbjct: 611 LGKHAWQSGARKEWEKARLDVTHYKRPSEEEIYEIERIANREVMANKPVTWEWMDRIEAE 670

Query: 661 ASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L   G      +RVV V            CGGTH SSTGEI ++ I+   SI+ 
Sbjct: 671 RRYGFRLYQGGVPPGREIRVVRVG------DDVQACGGTHCSSTGEIGVIKILKVESIQD 724

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R E   G+ A   +   +  LK  +  L+V    +   V+  ++E+++ +    +  
Sbjct: 725 GVIRFEFAAGEAALEQIAKNEALLKEASRILRVEPTILPKTVQRFFDEWKEQKKEIERLL 784

Query: 779 LQLN--VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            ++     +    K  + + +  +   +D+  +  ++    +    G +  +   +E   
Sbjct: 785 AEIARLKAESLAEKAEEFDSIKVVAEVIDA-PMNELVKIGSELANLGCVGSLMSQREGVR 843

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            V        +D  +A +L +   + +  G GGG+P++AQ  G      D+ +  + +FL
Sbjct: 844 LVTFSG----VDGIDARELIKEIGRHIK-GSGGGKPNLAQGAGQRALTRDELMDIIFTFL 898

Query: 897 KK 898
           ++
Sbjct: 899 RQ 900


>gi|150401051|ref|YP_001324817.1| alanyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
 gi|189082108|sp|A6UUN3|SYA_META3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150013754|gb|ABR56205.1| alanyl-tRNA synthetase [Methanococcus aeolicus Nankai-3]
          Length = 910

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 219/948 (23%), Positives = 380/948 (40%), Gaps = 187/948 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   FL FF KNGH  +    +        ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMVKEFLNFFDKNGHTPIKRYPVSARRWRDDILLTIASIAVFQPWVTKGIVKPVANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+ +R ++L ++  T
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHMTCFTMGGHHAFNTDEDFKYWTDRTVELCYNFFT 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +D   +                             T  +++W     G  GPC E+
Sbjct: 176 N-LGIDGSSI-----------------------------TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+  + +   +P   +DTG GLER   
Sbjct: 204 I------------------THGVELATLVFMQYEKTEQGDYIEMPLKIVDTGYGLERFVW 245

Query: 236 VLQEKTNNYDI------------------DLFKHLIQASEQVTGMKYEGN---------- 267
             +     Y+                   D+   ++  S  + G+    N          
Sbjct: 246 ASKGTPTVYEAVFGDIIGKLMDDANINMNDIGPKILAESATLAGLMDIENVGDLRILRQK 305

Query: 268 -----------------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                             I N   I DH R  +F++ DGI+P+N   GY+ R ++R+ + 
Sbjct: 306 VAEKLNLDVNELDSILSPIENIYAIADHTRCLAFMLGDGIVPSNVKDGYLARLLVRKTLR 365

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
           Y + +G +   +  ++      +   YPEL+  K  I + L  E+ ++ +T+ +G   ++
Sbjct: 366 YIKNVGLSLS-LKDIVAMQLENLKEIYPELMDMKEYIMDVLEEEENKYIQTITKGKGAVE 424

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA---------RGLAGIDI---ISF 418
            +       + +  D   +LYD+ GLP ++++DI+           +G   I I    +F
Sbjct: 425 RI---AKSKDEITLDDLIELYDSKGLPPEVVRDIVEEINKKGSKNNKGNKTIKITVPDNF 481

Query: 419 NQALEEQRSRARAHSL-GLGSGTTEKIWFSL-KEKYGATQFIGYDLLRGSKFMKEDRKVL 476
              + E+    +  S    G  T EK   S+  +    T+ + Y                
Sbjct: 482 YTIVAERHEEKKEDSKSEKGENTAEKSTISINLDDIPETELLFYSNP------------- 528

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                      V + +  I+                V+ D+T FY E GGQ  D G    
Sbjct: 529 -------YQKEVEAKILKIIGN-------------VVILDKTVFYPEGGGQKYDIGLI-- 566

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                +I  VQK   GI  H      G L  E +++  ++++NR  L  NH+ATH+++ A
Sbjct: 567 --GNKKIISVQKNNNGIVCHTVENTDG-LNEEDTIIAKLNWENRLNLMRNHTATHIINAA 623

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            S +LG H+ Q GS +  +  R D+TH K IT  E+K IE   N I+   +PV + +M R
Sbjct: 624 ASKVLGKHIWQTGSNVESNKARLDITHYKRITREEIKEIEKIANQIVLDAIPVKSTVMGR 683

Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A       +   G    + +R++ +E  D        CGGTH  +T E+  + I+   
Sbjct: 684 NEAEQKYGFKIYQGGVVPGNILRILDIEGVD-----VEACGGTHCQNTSEVGYIKILKTE 738

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ R+E  +G  + + +   ++ L + +S + V   N+   V   +EE+++ + I 
Sbjct: 739 RIQDGVERLEYTSGINSVNEVSLMEDILLNASSIVGVPCENLPKTVNRFFEEWKEQKKII 798

Query: 775 AKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +      +L+    +    K+   + +   +     KEL S+ D L  +  + I++L+ 
Sbjct: 799 EELHKKIGELEKGNLNDKFEKVGKYDLLVEKVEGA-PKELMSIADNLVNEKDNSIVILLN 857

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
            S      +L    E +       +L R  A       GGG+  MAQ 
Sbjct: 858 NSG----YILCKCGEKV--EIKMGELLRKIA------KGGGKDKMAQG 893


>gi|238022662|ref|ZP_04603088.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147]
 gi|237865865|gb|EEP67001.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147]
          Length = 963

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 201/385 (52%), Positives = 269/385 (69%), Gaps = 11/385 (2%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  FL+FFQ  GH+++ SSSL+P +DPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 1   MKTNELRAKFLQFFQSKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+  I  AW+ LT  +  +
Sbjct: 61  TTAQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLN 120

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           + + +L +TVY ED+EA+ +W  + G+ A++I+RI  N       DNFW M +TGPCGPC
Sbjct: 121 IPKEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPC 180

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D GE I GG+PGS  E+G+R+IEIWN VFMQF +  +     LPK S+DTGMGLE
Sbjct: 181 TEIFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLE 240

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           RMA V+Q   +NY+IDLF+ L++A  + TG  +      + +VI DH+RS SFLIADG++
Sbjct: 241 RMAAVMQGVHSNYEIDLFQDLLKAVARETGTAFSMEEP-SLKVIADHIRSCSFLIADGVM 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+NEGRGYVLRRI+RRA+ +   LG        L+P L  EMG AYPEL + +  I E L
Sbjct: 300 PSNEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL 376
           R E+ RFG+TL++G+ L + V   +
Sbjct: 360 RGEEMRFGETLEKGMGLFNQVWDAM 384



 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/526 (31%), Positives = 257/526 (48%), Gaps = 43/526 (8%)

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                I++G+  FKLYDT+G P D+  D+    G+  +D   F + +E       A    
Sbjct: 471 ANSKLIMSGEHIFKLYDTYGFPYDLTADMARELGIE-LDEEGFEREME-------AQRAR 522

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
             +    K    +      TQF GYD                          + + V A+
Sbjct: 523 ARAAQNFKANAQVAYDGAETQFHGYD-----------------------KRSLDATVLAL 559

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            + GE V E  +G+   VV D TPFYAE+GGQ+GD G       R ++ D QK    +  
Sbjct: 560 YRDGEAVNELNAGESGIVVLDHTPFYAESGGQVGDVGFIFSGENRFEVEDTQKIKAAVHG 619

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H   +  G L+   S+   +D   R  +  NHS THL+H AL  +LG+HV Q GS    +
Sbjct: 620 HFGTLVSGSLKVGDSICAEVDNVVREAIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAE 679

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             RFD++H + IT+ E+  +E  VN  I QN+PV    M+ EDA  SGA  L G KY D 
Sbjct: 680 LTRFDISHPQAITAEEIAEVERRVNHAIMQNVPVRVETMSLEDAQKSGAMMLFGEKYGDF 739

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRV+++     G +S+ LCGGTHV+ TG+I    I+SE  I AGIRR+EAITGQ A   +
Sbjct: 740 VRVITM-----GDYSTELCGGTHVARTGDIGFFKIISEGGIAAGIRRVEAITGQAALDWV 794

Query: 736 MGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
             Q+  +K   + +K     +++ +++      + L+   A+ K +L V   +      V
Sbjct: 795 QNQENLIKEAVNEVKAQGAKDLLAKIQTALAHSKALEKELARAKAELAVHAGAKLLDNAV 854

Query: 795 NFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
              +  +     E D+  L+ ++  L  K  + +++L  +  + K ++   V++ +  + 
Sbjct: 855 TVGAARLVAAQIEADAAALRDIVTDLTSKGDNIVVLLAAV-NDGKIALCAGVSKAMTAKV 913

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A DL + +A+ + GG GGGRP +AQ+GG +  K    I  V  ++
Sbjct: 914 KAGDLVKHAAEQI-GGKGGGRPDLAQAGGSDVEKLPAMIESVKDWV 958


>gi|303243766|ref|ZP_07330107.1| alanyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
 gi|302486008|gb|EFL48931.1| alanyl-tRNA synthetase [Methanothermococcus okinawensis IH1]
          Length = 905

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 211/947 (22%), Positives = 395/947 (41%), Gaps = 191/947 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   FL+FF++NGH  +    +        ++ T + +  F+   T G  +PV   
Sbjct: 60  TYNEMVKEFLKFFEENGHTPIKRHPVTARRWRNDILLTIASIAVFQPWVTKGIVEPVANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+ +R ++L ++ + 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNKVNDFKYWTDRTVELCFNFM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G+    I   T  +++W     G  GPC E+
Sbjct: 175 --------------------------KKLGIDEKSI---TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+    E   +P   +DTG G+ER   
Sbjct: 204 I------------------THGVELATLVFMQYEKIGN-EYKEMPLKVVDTGYGIERFVW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRV-- 274
             Q     YD  +F ++++  ++  G+ Y                   +  N+ + R+  
Sbjct: 245 ASQGTPTVYDA-IFGNIVKKLKENAGIDYIENIDERILAESATLAGLMDIENVGDLRILR 303

Query: 275 --------------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
                                     I DH R  +F+  DGI+P+N   GY+ R ++R+ 
Sbjct: 304 QKVAEKLKMNVDELDKLLTPLENIYAIADHTRCLAFMFGDGIVPSNVKDGYLARLLVRKT 363

Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368
           + Y + +G T P +  ++     E+   YPEL++ +  + + +  E+ ++ +T+++G  +
Sbjct: 364 LRYMKNVGITMP-LKEIINLQLEELKELYPELLEMRDYMMDVVDEEERKYLQTINKGRGI 422

Query: 369 LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG------------LAGIDII 416
           ++ ++        +  D   +LYD+ GLP ++++DI+                +      
Sbjct: 423 VERLV---KSKNEITLDDLIELYDSKGLPPEVVKDIVSEINSKSNTQNKKSGNIKLNIPD 479

Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           +F   + E+  + +         + +K    L E    T+ + Y   +  +F        
Sbjct: 480 NFYTIVAERHEQ-KKTEESDELNSQKKALPELNEDIEKTELLFYKNPKQKEF-------- 530

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
                          +  I+                ++ D+T FY E GGQ  D G   G
Sbjct: 531 ------------EGKILKIIDN-------------YIILDKTIFYPEGGGQKYDIGTING 565

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                ++ +VQKK +   V+H + +   L     +   ID+ +R  L  NH+ATH+++ A
Sbjct: 566 K----KVIEVQKKDD--IVYHKLSDVNGLNEGDVVKGVIDWNHRINLMRNHTATHIINAA 619

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
              +LG H+ Q GS + P+  R D+TH K I+  E+K IE   N+I+  N+PV +  M+R
Sbjct: 620 AQRVLGKHIWQTGSNVEPNKARLDITHYKRISRDEIKEIERIANEIVLNNIPVKSTFMSR 679

Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A       +   G    + +R++++E  D        CGGTH  +TGE+  + I+   
Sbjct: 680 NEAEQKYGFRIYQGGVVPGNVLRIINIEGID-----VEACGGTHCENTGEVGYIKILKTE 734

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I+ G+ R+E  +G  +   +   ++ L + +  L V   N+   V+  +EE+++ + I 
Sbjct: 735 RIQDGVERLEYTSGINSVMEVSAMEDILINSSEILGVPIENLPKTVKRFFEEWKEQKKII 794

Query: 775 AKRKLQLNVEDLS--CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGI 830
            + + ++         +K   V     ++ +V  + KEL S+ D L K  +  I++L+  
Sbjct: 795 EELQKKIGEYKKYELANKFEKVGNYDILVEQVEGNPKELMSIADNLIK--EGSIVVLLNN 852

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +        I+  +      +  +L R  A       GGG+ ++AQ 
Sbjct: 853 NG------YILCKKGEGVDISMGELLRKIA------KGGGKDNLAQG 887


>gi|45357960|ref|NP_987517.1| alanyl-tRNA synthetase [Methanococcus maripaludis S2]
 gi|48428515|sp|P61710|SYA_METMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|44920717|emb|CAF29953.1| Alanyl-tRNA synthetase [Methanococcus maripaludis S2]
          Length = 892

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 214/953 (22%), Positives = 388/953 (40%), Gaps = 177/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             + +   F  FF + GH  +  S ++     D  L+   S  V    + +G  KPV   
Sbjct: 60  TYNEMVKEFTNFFDEKGHTPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDDYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +   +D + +                             T  +++W     G  GPC E+
Sbjct: 175 QRLGIDGKTI-----------------------------TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++    +   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKIGN-DYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV----------------NHRV----- 274
             Q     Y+  LF  +I+  ++  G+      I+                + RV     
Sbjct: 245 ASQGTPTVYE-SLFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL   K  I + L +E++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSI-KDIISMQLENMKEIYPELSAMKEYIMDVLDAEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + +   +   +  D   +LYD++GLP +I++D++                        + 
Sbjct: 423 MAASKSE---ITLDDLIELYDSNGLPPEIVKDVVDDLN--------------------KK 459

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     +  +  + E++   +       +      E  K               + 
Sbjct: 460 GKKTIAITVPDNFYTIVAERHEEEKPEEVVSTKKELPELEVSKTELLFFKHPTQVEFEAK 519

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  IV++              VV D+T FYAE GGQ  D G        +++ DVQKK  
Sbjct: 520 VLKIVEK-------------YVVLDKTLFYAEGGGQKYDIGQLND----IEVMDVQKK-N 561

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           GI  H    +    +   ++   +++ NR +L  NH+ATH+++ A + +LG HV Q GS 
Sbjct: 562 GIVFHKVS-DISKFKEGDTVKGAVNWDNRLKLMRNHTATHVINAAATRVLGKHVWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  +  R D+TH + I+  ++K IE   N+I+   +PV +  M+R DA       +   G
Sbjct: 621 VDTEKGRLDITHYERISREQVKEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R++ +E  D        CGGTH S+T E   + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIIEIEGTD-----VEACGGTHCSNTSECGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAKRKLQLNVEDLS 787
            + S +   ++ L   A  L +    +   V+  +EE+++ +      ++K+   V+   
Sbjct: 736 GSVSEIASLEDTLIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYEL 795

Query: 788 CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             K  +V     ++ +V     EL S+ D L   + + +I+L+  +      +L    E+
Sbjct: 796 ADKFENVGNYEVLVEQVSGTPNELMSIADNLA--VGNKLIVLMNEND----YLLCKRGEN 849

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +    +  DL R        G GGG+ ++AQ  G      +Q    +   L K
Sbjct: 850 V--ELSMKDLIRNI------GKGGGKDNLAQ--GKYSENKEQITEKIIQILNK 892


>gi|257387184|ref|YP_003176957.1| alanyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169491|gb|ACV47250.1| alanyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 924

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 214/969 (22%), Positives = 378/969 (39%), Gaps = 182/969 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKN-IFTGQEKPVYQA 60
           ++  +R TFL FF++  H  +    +        ++ T + +  F+  + TGQ  P    
Sbjct: 61  SLEEMRETFLSFFEERDHGRVDPYPVAANRWRDDVLLTQASIYDFQPHVTTGQSPPPSNP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q C+R      D+DNVG+T RH   FEM G+ +F     +     A++        
Sbjct: 121 LVVSQPCIRMQ----DIDNVGKTGRHTMAFEMGGHHAFNA---DEGAGYAYE-------- 165

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
                   VY ++E      +    L  D    +T  ++ W     G  GPC E+ +   
Sbjct: 166 ------GEVYWKEETVQYCVELFEELGVD-SSELTLIEDVWVGG--GNAGPCFEVIY--- 213

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLER 232
                          + +E+  LVFMQFEQ    +           + +  +DTG G+ER
Sbjct: 214 ---------------QGLELATLVFMQFEQDPDGDYEMKDGNSYSEMDRRVVDTGYGIER 258

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV---------------------- 270
              + Q     Y+  ++  +I+      G+ Y                            
Sbjct: 259 WTWMSQGTPTVYEA-IYPEMIEFLRDNAGLDYTDEEDEIVFRAAKLAGHMDIDEAEDVEA 317

Query: 271 ------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                   +   I DH R+ ++++ DGI+P+N G GY+ R ++R
Sbjct: 318 ARDTMAEQLGVETARLVELMEPLEDIYAIADHSRTLAYMLGDGIVPSNVGTGYLARMVLR 377

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R       +G   P +  L+      +G         +  I + +R+E E++ +TLDRG 
Sbjct: 378 RTKRLVDTVGVDAP-LDELVDMQADRLGY------DNRDTIRDIVRTEVEKYRETLDRGG 430

Query: 367 VLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
             +  +      KDE +      +LYD+HG+  D++ +I   RG+      +F   + ++
Sbjct: 431 RKVRQLADDYAEKDEPIPVQELIELYDSHGIQPDMVAEIAAERGVDVDVPDNFYGLVADR 490

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
               +A          +++     ++   T  + Y+  +  +F                 
Sbjct: 491 HGGGQAFEEDATVPHEKRL-----DELPETDRLYYEDQQRMEF----------------- 528

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               ++V  +  +             +VV DQT FY E GGQ  D G    D +  ++TD
Sbjct: 529 ---EAVVLEVFDR--------EDGDYDVVLDQTMFYPEGGGQPPDHGTISTDDVTGEVTD 577

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQ    G+ VH    + G   T   +   +D   RR+L  +H+ATH++ H+   +LG HV
Sbjct: 578 VQ-VHGGVIVHTCDEDPG---TGEFVRGQVDATRRRRLMRHHTATHVVIHSARQVLGEHV 633

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+    D  R D+ H + I+  ++K IE   N+I+  N  V     +R +A  +   
Sbjct: 634 RQAGAQKGTDSSRIDIRHYESISREQVKEIEHRANEIVMDNAAVTQEWPDRHEAEKAHGF 693

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G    +++R++ V            CGGTHV  TG+I  + +++   I+ G+ R+
Sbjct: 694 DLYQGGIPTGEQIRLIHVA------DDVQACGGTHVGRTGDIGAIKLLNTERIQDGVIRL 747

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
               G  A       ++ L   A    V+  +V       ++E++         K QL  
Sbjct: 748 TFAAGDAAIDATHEIEDALYETAELYDVATEDVPDTAARFFDEWKARGKEIEDLKEQLAE 807

Query: 784 E------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                  D    ++AD   +   I + D  EL++  +A+  +   G I ++G      A 
Sbjct: 808 ARASGGGDSEEIEVADTTAVVQRI-DADMDELRAQANAVVDQ---GSIAVLGSGASG-AQ 862

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQAI 889
            ++ V + +    NA ++    A         GR           AQ GGP+ +K D A+
Sbjct: 863 FVVAVPDGVA--VNAGEVVGELA---------GRVGGGGGGPSDFAQGGGPDADKLDDAL 911

Query: 890 AGVASFLKK 898
           A     L++
Sbjct: 912 ADAPEILRQ 920


>gi|21619898|gb|AAH33169.1| AARS2 protein [Homo sapiens]
          Length = 785

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 212/800 (26%), Positives = 343/800 (42%), Gaps = 76/800 (9%)

Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
           +     +NFW M +TGPCGPC+EI +D    +            + +E+WNLVFMQ  ++
Sbjct: 1   LSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGA---------PQLVELWNLVFMQHNRE 51

Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GM 262
                  LP+  +DTGMGLER+  VLQ K + YD DLF  L+ A +Q           G+
Sbjct: 52  ADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGV 111

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPL 321
             EG     +RV+ DH+R+ S  I+DG+ P   G   VLRRI+RRA+ +   +L      
Sbjct: 112 ADEGRTDTAYRVVADHIRTLSVCISDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGF 171

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
           +  L+P +   +G AYPEL +    I   +  ++  F  +L+RG  ++D  L  LG  ++
Sbjct: 172 LGSLVPVVVETLGDAYPELQRNSAQIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDM 231

Query: 382 LNGDVAFKLY--DTHGLPLDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGS 438
              +VA+ L      GLPLD+++ +L  +G+  +D     + A EE + RAR        
Sbjct: 232 FPAEVAWSLSLCGDLGLPLDMVELMLEEKGV-QLDSAGLERLAQEEAQHRARQAEPVQKQ 290

Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
           G    +W  +    G  Q  G      S    +    L      +     + +++   + 
Sbjct: 291 G----LWLDVHA-LGELQRQGVPPTDDS---PKYNYSLRPSGSYEFGTCEAQVLQLYTED 342

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHH 557
           G  V     GQ+  ++ D+T FYAE GGQ  D G  +  G    +  V + +  G F+ H
Sbjct: 343 GTAVASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILH 402

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             V    LR    + L +D   R      H+ATHLL+ AL   LG    Q GS + P+ L
Sbjct: 403 EAVAPECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQL 462

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV- 676
           R DVT   P+T  +L+++E+ V + + Q+  V    +             L   Y D V 
Sbjct: 463 RLDVTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVR 522

Query: 677 ---------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                      +    +     S  LC GTH+  TG +  L I+ +  +  G  R+ A+T
Sbjct: 523 VVSVGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVT 582

Query: 728 G---QRARSHLMGQDEKLKSLASFLKVSQGNVVGRV-----------------------E 761
           G   Q+AR       +++K+    L +   +V   +                        
Sbjct: 583 GEQAQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRR 642

Query: 762 EIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMS-HIISEVDSKELKSVMD---A 815
           E+    + LQ     A RKLQ+        ++ + +     I+  V ++ L  ++     
Sbjct: 643 ELLATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQ 702

Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
           L ++  S  ++L+      K      V +  +  F A   A      +GG   G R  +A
Sbjct: 703 LCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVA 761

Query: 876 QSGGPNGNKADQAIAGVASF 895
           Q  G   +  + A++   ++
Sbjct: 762 QGTGSTTD-LEAALSIAQTY 780


>gi|119872431|ref|YP_930438.1| alanyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
 gi|205830187|sp|A1RT13|SYA_PYRIL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119673839|gb|ABL88095.1| alanyl-tRNA synthetase [Pyrobaculum islandicum DSM 4184]
          Length = 892

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 225/955 (23%), Positives = 368/955 (38%), Gaps = 177/955 (18%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + + + +R  FL FF++NGH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  IESPAELRERFLRFFERNGHVRIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   Q A++  
Sbjct: 114 PLVISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTQYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           TKE                           G+  D+I   T  ++ W     G  G C E
Sbjct: 170 TKEL--------------------------GIPQDEI---TFKESMWEGG--GNAGECFE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                    R +E+  LVFM +E +   +   LP   +DTG GLER+ 
Sbjct: 199 VLV------------------RGLEVATLVFMHYEVK-DGKYVELPLKIVDTGYGLERIY 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------ 270
            +L+     YD  +F H +    Q  G+     +I+                        
Sbjct: 240 WLLKGTPTIYDA-VFSHYLAKVRQKVGIPEPPADIMGRASIYFGQMDPEVIGLDKAYDII 298

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                 V+ DH R+ S++IADG++P+N G GY+ R ++RR +  
Sbjct: 299 AEKIGVDPKWLREVVRPQEALYVLADHSRTVSWMIADGVIPSNTGAGYLARLLIRRILKN 358

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            R++G   P ++ L      E+   YPE+  A+ LI E +  E++++ + L      +  
Sbjct: 359 LRVVGIDAP-LVELFDMHLAELKREYPEIWAARDLILELVDLEEKKYREVLKSAPAAVKK 417

Query: 372 VLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
            L    +     L+ D    LYD+ G+P +I+ ++  + G        F   L  + ++ 
Sbjct: 418 ALEEARRRGRAGLDTDDLVALYDSQGIPPEIVAEVAKSLGAEVKVPDDFYTKLAARHAK- 476

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                   S   E    +             DL R  +   ED  +   K          
Sbjct: 477 --REKKPESPLVEMSKVA-------------DLPRTRELFYEDSYMRSFK---------- 511

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                       V   + G+   VV DQT FY E GGQ  D G     G   ++ DVQ+ 
Sbjct: 512 ----------ARVLRVIDGR--YVVLDQTAFYPEGGGQPADRGVLKFQGGEAKVVDVQRV 559

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              +     +VE  +      +V  ID++ R  L   H+ TH+L  ++  +LG H+ Q G
Sbjct: 560 GHVVVH---VVEGQLPPEGAEVVGEIDWERRYSLMKMHTGTHVLIQSIRRVLGPHIWQAG 616

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +       R DVTH K  T+ E+  IE+  N ++ +NLPV  +IM R +A A     L  
Sbjct: 617 AQKDIPSSRLDVTHYKLPTAEEIAKIEELANKVVQENLPVYVKIMPRNEAEAKYGFILYQ 676

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G      +RV+ +   D        CGGTH+ STGEI L+ I     I  G+ R    T
Sbjct: 677 GGVVPTREIRVLQIG-PDEEPFDIQACGGTHLRSTGEIGLIKIQKVERIADGVVRFVFTT 735

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVE 784
           G  A +++   + KL   A  +  S+   V  V+++ +   + +     +A+    +  E
Sbjct: 736 GMHALAYIQELERKLAEAAHIIGGSREEFVESVKKLLQRAEEAERRAKHYAELYAAVVAE 795

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           +L   +I         +++          D L K      I L    ++ K  VL+ V  
Sbjct: 796 NLRAEQIGKYRVAVVELND----------DELAKH-----IALAATRRD-KDLVLVFVGG 839

Query: 845 DLLDRFNAVDLARLSAKVL--GGGGGGGRPHMAQS---GGPNGNKADQAIAGVAS 894
           D +  +          K L   G  GGG    AQ    G  +     +A+    S
Sbjct: 840 DRVTIYTGGVDVTPVVKTLREAGFRGGGSKTFAQGLYKG--DIQTLKEALKKALS 892


>gi|126460596|ref|YP_001056874.1| alanyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
 gi|189082115|sp|A3MXP1|SYA_PYRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126250317|gb|ABO09408.1| alanyl-tRNA synthetase [Pyrobaculum calidifontis JCM 11548]
          Length = 896

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 209/947 (22%), Positives = 366/947 (38%), Gaps = 165/947 (17%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + ++  +R  FL FF+++GH  +    ++      +    + +  F+   T G   P   
Sbjct: 59  VESLRDVRERFLSFFERHGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 118

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   + A+   
Sbjct: 119 PLTISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTEYAYRFF 174

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+E                           G+  ++I   T  ++ W     G  G C E
Sbjct: 175 TEEL--------------------------GIPPEEI---TFKESMWEGG--GNAGECFE 203

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                    R +E   LVFM +E +   +   LP   +DTG GLER+ 
Sbjct: 204 VLV------------------RGLEAATLVFMHYEVK-DGKYVELPLKIVDTGYGLERIY 244

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------------------- 271
            +++     YD  +F   +    +  G+     +++                        
Sbjct: 245 WLIKGTPTIYDA-VFGPYLAKVRERLGVPEPPRDVMAKASIYFGQMDPEVISLDKAYDII 303

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                 V+ DH R+ +++IADG++P+N G GY+ R ++RRA+  
Sbjct: 304 AEKIGVDGKWLREVVKPQEALYVLADHSRTVAWMIADGVIPSNSGAGYLARLLIRRALRG 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
             L G   P ++ L      E+   YPE+ +A+ LI E +  E++++ + L     ++  
Sbjct: 364 LMLAGVDAP-LVELFDLHLKELRYDYPEVWEARSLILELVDMEEKKYREVLKSAPAVVKR 422

Query: 372 VLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
            L    +     L+ +    LYD++GLP +++ +   + G+       F   L  +  R 
Sbjct: 423 ALEENRRRGKAGLDKEDLVTLYDSYGLPPEVVAEAAKSMGIEVKVPDDFYSLLASRHVR- 481

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                G  +   E    +             DL R  +   ED  +   K          
Sbjct: 482 --REKGREATLVEMAKVA-------------DLPRTRELFYEDAYMRTFKAK-------- 518

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                       V   + G+   VV DQT FYAE GGQ  DTG     G   ++ DVQ+ 
Sbjct: 519 ------------VLRVIDGK--YVVLDQTAFYAEGGGQPADTGVLRHSGGVAKVVDVQRV 564

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I     +VE  + +    +V  +D++ R  L   H+ TH+L  ++  +LG H+ Q G
Sbjct: 565 GHVIVH---VVEGDVPQEGSEVVGEVDWERRYALMKMHTGTHVLIQSIRRVLGPHIWQAG 621

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +       R DVTH K  T  E+  IE   ND++ ++LPV  ++M R +A A     L  
Sbjct: 622 AQKDIPFSRIDVTHYKLPTPEEVAKIERLANDVVQRDLPVYVKVMPRNEAEAKYGFILYQ 681

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G      +RVV +   D   +    CGGTH+  TGEI L+ +     I  G+ R    T
Sbjct: 682 GGVVPAREIRVVQIG-PDDEPYDVQACGGTHLRRTGEIGLIKVHKVERIADGVVRFIFTT 740

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A +++   + +    A+    S+  +V  V+ + +   + +                
Sbjct: 741 GPHAVAYVQELERQAAEAAALGGGSKEELVEVVKRLLKRAEEAEKKARHYAELYAAALAE 800

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             K   V      + E+D +EL   +  L  K    ++++  +   ++ ++         
Sbjct: 801 NLKAEAVGQRRLAVVELDDEELAKRVALLATKRDPDLVLV--VKAGERVTIY-------T 851

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS--GGPNGNKADQAIAGV 892
              +   + +   ++  G  GGG    AQ    G +  K  +AI   
Sbjct: 852 GGVDVGPIVKALREI--GFRGGGSKTFAQGVYAG-DVEKLKEAIRRA 895


>gi|223986202|ref|ZP_03636221.1| hypothetical protein HOLDEFILI_03531 [Holdemania filiformis DSM
           12042]
 gi|223961839|gb|EEF66332.1| hypothetical protein HOLDEFILI_03531 [Holdemania filiformis DSM
           12042]
          Length = 515

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 192/478 (40%), Positives = 283/478 (59%), Gaps = 20/478 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  FL++FQ  GH + P +SLIP NDPTL++ N+G+   K  F G EKP    + 
Sbjct: 47  TGNQVRQMFLDYFQSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPACNRIA 106

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 107 NAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKADAIPFAWEFLTSPEWIGF 162

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LY+TVY +DEEA+++W ++ G+    I++  T DNFW + E GP GP SEIF+D+G
Sbjct: 163 DKNKLYVTVYPDDEEAYRIWTEVCGVDPSHILK--TADNFWEIGE-GPGGPDSEIFYDRG 219

Query: 181 ECIPGGLPGSS-----EEGERYIEIWNLVFMQFEQQNKQE---RFILPKMSIDTGMGLER 232
           E       G        E +RYIE+WN+VF QF+ +   +      LP  +IDTGMGLER
Sbjct: 220 EKYDPEGLGEKLFFEEMENDRYIEVWNVVFSQFDCRPGTDRKLYKELPHKNIDTGMGLER 279

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           + +++QE   N+D DLF  +I+A+E++    YEG   + +RVI DH+R+ +F ++DG + 
Sbjct: 280 LVSIIQEGETNFDTDLFLPIIRAAEKLAKHPYEGEYKMAYRVIADHIRTVTFALSDGAMF 339

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRR++RRA+ Y   LG     M  L+  +   M   YP L++    + + ++
Sbjct: 340 SNEGRGYVLRRVLRRAVRYGIKLGINGAFMYKLVDVVADNMKDFYPYLLEKTEFVAKLVK 399

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
           +E+E F  TL  G  LL+  L+     + L+G+V FKLYDT+G PL++ ++I   RG   
Sbjct: 400 NEEEAFHSTLANGEKLLNEELAKAEAAKTLSGEVVFKLYDTYGFPLELTKEIAGERGYT- 458

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470
           ID   F   + +QR RARA      S  ++     L +     +F GY+ +  +  + 
Sbjct: 459 IDEEGFEAQMAKQRERARAAREDAQSMASQSA--DLMDFTAPFEFTGYETMSDTGTIT 514


>gi|110669520|ref|YP_659331.1| alanyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121689502|sp|Q18E76|SYA_HALWD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|109627267|emb|CAJ53757.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 923

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 227/963 (23%), Positives = 381/963 (39%), Gaps = 173/963 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++S +R  FL FF+   H+ +    +        ++ T + +  F+ + T GQ  P    
Sbjct: 61  SLSGMREEFLSFFESRDHDRIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGQTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q C+R      D+DNVG+T RH   FEM+ + +F                T+E   
Sbjct: 121 LCISQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFN---------------TREDAS 161

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+      VY +DE           + AD +  IT  ++ W     G  GP  E+ +   
Sbjct: 162 DEYAYTGEVYWKDETVRLCDAFFEHMGAD-LTEITYIEDPWVGG--GNAGPAFEVLY--- 215

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLER 232
                          R  E+  LVFM  EQ    E           +    +DTG GLER
Sbjct: 216 ---------------RGAELATLVFMSMEQDESGEYEMKDGNRYSPMDTYVVDTGYGLER 260

Query: 233 MATVLQEKTNNYDI---DLFKHL---------------------------IQASEQVTGM 262
            A V Q     Y+    D  + L                           I   + +   
Sbjct: 261 WAWVSQGTPTVYEAVYPDTIEFLKNDADVTHTTDEKELIQQAAMLSGYLDIDEIDNLASA 320

Query: 263 KYEGNNIVN---------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
           + +  + ++                  I DH R+ +++  D I+P+N G GY+ R ++RR
Sbjct: 321 RADVADELDVDPSVLTDLLEPLESIYAIADHYRTLAYMFGDEIVPSNVGTGYLTRMVLRR 380

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                  +G   P +  L+      +G       + +  I + +R+ED ++ +TL RG  
Sbjct: 381 TQRLIDDIGIDAP-LDELVDMQAERLGY------ENRDTIRDIVRTEDRKYRETLSRGRR 433

Query: 368 LLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++ +      ++E +  D   +LYD+HG+  D++ +I   RG        F   +    
Sbjct: 434 RVETLADEYADRNESIPVDELIELYDSHGIQPDMVTEIASDRGATVEIPDDFYSLV---- 489

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
             A  H+    + T EK    L +    T  + YD   G++F                  
Sbjct: 490 --ADRHTDDDTTETIEKRRDRLAD-LPETDRLYYDDQTGTEF------------------ 528

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V  I +Q             ++V DQT FY E GGQ  D G    +   ++ITDV
Sbjct: 529 --EAVVLDIFEQD---------TGYDIVLDQTMFYPEGGGQPADHGTLTTEEETIEITDV 577

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            K  +G+ +H A    G       +   +D + RR+L  +H+ATH++ HA   +LG HV 
Sbjct: 578 -KAQDGVILHQATENPG---KGDFIRGQLDVERRRRLMQHHTATHIIGHAARKVLGDHVR 633

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  RFD+TH + I   E K+IE   NDII QN+ V     +R +A       
Sbjct: 634 QAGAQKGTDSARFDLTHYERINRIEAKTIESVANDIIRQNISVRQDWPDRHEAENEHGFD 693

Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L   G      +R +++            CGGTHV+ TG+I  + I++   ++ G+ RI 
Sbjct: 694 LYQGGIPPGQNIRTITIG------DDIQACGGTHVTRTGDIGTIKILTTEPVQDGVERIV 747

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
              G  A   +   ++ L   A  L V+  +V    +  + E+++      K K +L   
Sbjct: 748 FAAGDAAIDAVQTTEDALYDAADVLDVTPEHVPETADRFFTEWKERGKTIDKLKSELAEA 807

Query: 785 DLSC--HKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
                      ++ +  +I  V  D+ EL+   +A+   +    + ++G   +  A  ++
Sbjct: 808 RAQGVTADAVSIDGIDAVIKTVNGDADELRKTANAI---VDEDAVAVLGSDVDGSAQFVV 864

Query: 841 VVTEDLLDRFNAVDLARLSAKVL------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            V ED+    NA D+    A+ +              P  AQ GGP+    + A+    S
Sbjct: 865 GVPEDI--GINAGDVVGQLARKVGGGGGGP-------PDFAQGGGPDAASLEVALDDATS 915

Query: 895 FLK 897
            L+
Sbjct: 916 VLR 918


>gi|149002767|ref|ZP_01827693.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759061|gb|EDK66055.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 449

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 182/454 (40%), Positives = 272/454 (59%), Gaps = 22/454 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  +L+F+    H + PS SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI  A++LLT  + FD 
Sbjct: 65  NAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPEWFDF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              +LY+T Y +D++++  W ++ G+    +I I   DNFW +   GP GP +EIFFD+G
Sbjct: 121 PAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIGA-GPSGPDTEIFFDRG 176

Query: 181 ECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLER 232
           E       G        E +RYIEIWN+V  QF       + E   LP  +IDTG GLER
Sbjct: 177 EAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGAGLER 236

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGIL 291
           +  V+Q    N++ DLF  +I   E+++G  Y+ + + ++ +VI DH+RS SF I DG L
Sbjct: 237 LVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNMSFKVIADHIRSLSFAIGDGAL 296

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P NEGRGYVLRR++RRA  + + LG  EP +  L+P +   M S YPE+++ +  IE+ +
Sbjct: 297 PGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDFIEKIV 356

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
           +SE+E F +TL  G     G+++ L +    ++ G   FKLYDT+G P+++ ++I    G
Sbjct: 357 KSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEIAEEAG 416

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           +  +D   F  A++EQ+ RARA ++  GS   +K
Sbjct: 417 MT-VDREGFEAAMKEQQERARASAVKGGSMGMQK 449


>gi|297516502|ref|ZP_06934888.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 358

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 199/358 (55%), Positives = 255/358 (71%), Gaps = 12/358 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT  K F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LIQA  +VTG     N   + RVI DH+RS +FLIADG++
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK--SLRVIADHIRSCAFLIADGVM 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L   MGSA  +L + +  +E+
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQ 358


>gi|289581575|ref|YP_003480041.1| alanyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289531128|gb|ADD05479.1| alanyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 926

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 229/970 (23%), Positives = 390/970 (40%), Gaps = 182/970 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           N+S +R  FL FF+ + HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  NLSEMREQFLSFFEAHDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                    D 
Sbjct: 121 LTVSQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNAREDLD-------------DP 163

Query: 121 DQRRLYITVYDEDE--EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +Q      VY +D   E    +    G+  +++I     ++ W     G  GP  E+ + 
Sbjct: 164 EQYAYQGEVYWKDRTVELCDEFFDSMGVDLEEVI---YIEDPWVGG--GNAGPAIEVIY- 217

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGL 230
                            R +E+  LVFM  EQ  + E           +    +DTG GL
Sbjct: 218 -----------------RGVELATLVFMSMEQDTEGEYEMKDGNRYTPMDTYIVDTGYGL 260

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-------------------- 270
           ER   V Q     Y+  ++  +I+  +   G+++  +                       
Sbjct: 261 ERWTWVSQGTPTVYEA-VYPDMIEFLKDNAGIEHTEDEEALIHRAAKLAGHMDIDEAEDM 319

Query: 271 --------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
                                     +   I DH R+ ++++ DGI+P+N G GY+ R +
Sbjct: 320 ETARGEIATELAVDAAELESLMEPLEDIYAIADHCRTLAYMLGDGIVPSNVGTGYLARMV 379

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RR       +G   P +  L+      +        + +  I + +R+E E++ +TL+R
Sbjct: 380 LRRTKRLCDTVGVDAP-LDELVDMQADRLEY------ENRDTIRDIVRTEVEKYRETLER 432

Query: 365 GLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           G   ++ +   H    E +  D   +LYD+HGL  D++++I    G        F   + 
Sbjct: 433 GSRRVESLAEEHAETGEPIPTDELIELYDSHGLQPDMVEEIAAEAGADVDVPDDFYSLVA 492

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           E+     A         T++ +  L E    T+ + YD  + ++F               
Sbjct: 493 ERHDTPEAAEKTTDE--TDERFADLPE----TETLYYDDQQRTQF--------------- 531

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 ++V         V E  SG   ++V DQT FY E GGQ  DTG    D   +++
Sbjct: 532 -----EAVVLD-------VFERESG--YDIVLDQTMFYPEGGGQPADTGTLSTDDATVEV 577

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DVQ++ +G+ +H    + G       +   +D   RRQL  +H+ATH++ HA   +LG 
Sbjct: 578 RDVQRE-DGVILHRTDDKLG---KGEFVNGQLDATRRRQLMRHHTATHIVIHAARQVLGE 633

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q G+    D  R D+ H   I+  ++K+IE   ND++ +N  V     +R DA +  
Sbjct: 634 HVRQAGAQKGVDSSRIDLRHYDRISREDVKTIERVANDLVMENTSVSQEWPDRHDAESDH 693

Query: 664 AAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              L   G    +++R++ V            CGGTHV+ TG+I  + I++   ++ G+ 
Sbjct: 694 GFDLYQGGIPPGEQIRLIHVA------DDVQACGGTHVNRTGDIGSIKILTTERVQDGVE 747

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKL 779
           RI    G  A       ++ L   A  L VS   V    E  +EE++    Q+     +L
Sbjct: 748 RITFAAGDAALESTQENEDALYEAAEILDVSPEEVPDTAERFFEEWKARGKQIEDLTEEL 807

Query: 780 -QLNVEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                      +  DV   + I+   + D  EL++   A+   +  G I ++G S E  A
Sbjct: 808 AAARAGGGGSGEEYDVGETTAIVDRLDADMDELRATASAI---VDEGSIAVLG-SGESGA 863

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQA 888
           + ++ V +D+    NA ++    A          R        P  AQ GGPN    D A
Sbjct: 864 TFVVAVPDDV--GVNAGEVVGELAA---------RVGGGGGGPPDFAQGGGPNTEDLDDA 912

Query: 889 IAGVASFLKK 898
           +A     L++
Sbjct: 913 LADAPDVLRQ 922


>gi|11499836|ref|NP_071080.1| alanyl-tRNA synthetase [Archaeoglobus fulgidus DSM 4304]
 gi|3334348|sp|O28029|SYA_ARCFU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2648270|gb|AAB89002.1| alanyl-tRNA synthetase (alaS) [Archaeoglobus fulgidus DSM 4304]
          Length = 906

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 218/963 (22%), Positives = 377/963 (39%), Gaps = 189/963 (19%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           +  +R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +T
Sbjct: 62  LDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLT 121

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q C+R     +DLD+VGRT RH T FEM+ + +F       Y+K   +    +LL   
Sbjct: 122 ISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL--- 174

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                      G+  + I+     +  W+    G  GPC E   
Sbjct: 175 ------------------------NELGVKKEDIV---YKEEPWAGG--GNAGPCLE--- 202

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMGL 230
                I GG           +E+  LVFM  E+  + +          +    +DTG GL
Sbjct: 203 ----AIVGG-----------LEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGL 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV-------------- 276
           ER     +     YD  +F  ++      + + +   +    R++               
Sbjct: 248 ERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRG 306

Query: 277 -----------------------------------DHLRSSSFLIADGILPANEGRGYVL 301
                                              DH R   F++ DG++P+N G GY+ 
Sbjct: 307 ERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLA 366

Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           R ++RR++  A  L      +  L+      +G    E       ++E L  E ER+  T
Sbjct: 367 RLMIRRSLRLAEELELGLD-LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTT 422

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           + +G  L++ ++    K   L  D   +LYD+HG+P+++   I   +G            
Sbjct: 423 VSKGTRLVERLVERKKK---LEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAE 479

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           L ++ S+A                 +L+ +Y AT+ + YD     +F  E          
Sbjct: 480 LAKRHSKAEKVQEKK---------ITLQNEYPATEKLYYDDPTLLEFEAE---------- 520

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                        I  +G+ V           + +++ FY E+GGQ  D G  I +G + 
Sbjct: 521 ------------VIGVEGDFV-----------ILNRSAFYPESGGQDNDVGYLIANGGKF 557

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++ DV + A+G+ +H  +V+         +   ID   R +   +HSATH+L ++L  +L
Sbjct: 558 EVVDVLE-ADGVVLH--VVKGAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVL 614

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+HV Q G+       R DVTH +  +  E+K IE   N  I  N P+    M+R +A  
Sbjct: 615 GNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAER 674

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                L   G     ++RVV V            CGGTH  STGEI +L I+   SI+ G
Sbjct: 675 KFGFRLYQGGVPPGRKIRVVQVG------DDVQACGGTHCRSTGEIGMLKILKVESIQDG 728

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + R E   G+ A   +   +  L+  +S L+V    +   VE  +EE++  +    + K 
Sbjct: 729 VIRFEFAAGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKS 788

Query: 780 QLNV--EDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSGIIMLVGISKEKK 835
            +     D+   +  + + M  +   VD+    L+ + + L +K   G +  +    E K
Sbjct: 789 VIADLWADILMERAEEFDSMKVVAEVVDADMQALQKLAERLAEK---GAVGCLMAKGEGK 845

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V+    +    +++A +L R   + +  G GGGR  +AQ         ++ +  +  F
Sbjct: 846 VFVVTFSGQ----KYDARELLREIGR-VAKGSGGGRKDVAQGAVQQLLDREEMLDVIFRF 900

Query: 896 LKK 898
           L +
Sbjct: 901 LSE 903


>gi|148642679|ref|YP_001273192.1| alanyl-tRNA synthetase [Methanobrevibacter smithii ATCC 35061]
 gi|205830145|sp|A5UKU6|SYA_METS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|148551696|gb|ABQ86824.1| alanyl-tRNA synthetase, AlaS [Methanobrevibacter smithii ATCC
           35061]
          Length = 897

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 210/954 (22%), Positives = 370/954 (38%), Gaps = 168/954 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  I+  F EF +K GH  +    ++     D   +   S       + +G  KP    
Sbjct: 52  TLYEIQQVFREFLEKEGHTPIKRYPILAKRWRDDVFLVGASIFCFQPWVTSGMVKPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  VR     ND+DNVGRT RH T F M  +          Y+++  I+L  +   
Sbjct: 112 LEIEQPSVRL----NDVDNVGRTGRHMTCFTMGSHTVINTEENFIYWEDETIRLCHEFF- 166

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G++ ++I  I    ++WS       GPC E+
Sbjct: 167 --------------------------KYIGINTEEICFI---KSWWSGGGNE--GPCYEV 195

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVF+Q++  +  E+  +P   +DTG GLER+A 
Sbjct: 196 ------------------CVRGVELATLVFIQYKTLDNGEKEEIPIKVVDTGYGLERIAW 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN------------------NIVNHR---- 273
           + Q     YD   F  ++   +++T +K   +                  +I   R    
Sbjct: 238 ISQGTPTAYDA-CFAPVVDKLKELTDVKVNTDILARNAQIAGMMDIEDIGDIKELRQQVA 296

Query: 274 ---------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                +I DH R  +F++ADGI+P+N   GY+ R ++RR + + 
Sbjct: 297 NSLGITLDELLESAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFM 356

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + L   E  +  ++      +   YPE+  ++  I   +  E+ER+  T+ +G  ++   
Sbjct: 357 KELNMKES-LAEVMGIQLEFLTKFYPEIKDSEDHIMNIISLEEERYQSTIKKGTSIVKRS 415

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           +  L K+    +  D+   LYD HG+P + + +I            +F   +        
Sbjct: 416 IKRLKKEGKTEMPLDMLMDLYDAHGIPPETVVEIAGD-NFTVNVPDNFFTLVA------- 467

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
               G     T     S +  Y  T  + Y      +F                      
Sbjct: 468 ----GAHEKDTSNKKESFEIDYPETDLLFYKDFNQKEF---------------------- 501

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                  + E++       K  +VFD+T FY E GGQ  D G    DG  + I   +K  
Sbjct: 502 -------EAEVLGVVEKDGKNTLVFDKTVFYPEGGGQPSDVGTISVDGAVVNINYAEKVN 554

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +  H              +   ID+  R  L+ +HSATHL+  A   ILG H+ Q G+
Sbjct: 555 NVVLHHVDGDVDLDNFVGKKVEGKIDWNRRITLARHHSATHLIVAAARKILGEHIWQAGA 614

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
                  R D++H K I+  EL  IE   N+ +  N+ +  +   R++A +     L   
Sbjct: 615 QKGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIKFYTRDEAESLYGFKLYQG 674

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G      +RVV +   D        C GTHV  TG+I  + I     ++ G+ RI+   G
Sbjct: 675 GIVPGKSIRVVKIPGID-----VQACAGTHVLRTGDIGPIKINKTERVQDGVERIDFSAG 729

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-----LQLNV 783
             A   +  +++ L+  +   KV    +    +  + E++  +    K K     L++N 
Sbjct: 730 TAAVDSIQNENKLLRESSGIFKVDDDQLPKTCDRFFSEWKAQKNEIDKLKSEIASLKMNS 789

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                 +I  +  +  +I + D KEL+ +        ++ ++++   + + K  ++   +
Sbjct: 790 LADDVTEINGLKVVKQLI-DADFKELQKIATDFTDNDKADVVLM--GNNDGK--IVGAAS 844

Query: 844 EDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ +D      ++ + +A VLGGGGG GR  +AQ  GP     ++A+      +
Sbjct: 845 QNAIDAGIKVNEIIKKAAGVLGGGGG-GRLTLAQGAGPKCENMNEALNIAIDLI 897


>gi|327310071|ref|YP_004336968.1| alanyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
 gi|326946550|gb|AEA11656.1| alanyl-tRNA synthetase [Thermoproteus uzoniensis 768-20]
          Length = 893

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 212/949 (22%), Positives = 371/949 (39%), Gaps = 163/949 (17%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + ++  +R  FL FF++ GH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  VDSIRDLRERFLSFFERRGHTRIKRYPVVARWRDDVFLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+     + A++  
Sbjct: 114 PLTISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIGETTEYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T                          K  G++ D++   T  ++ W     G  G   E
Sbjct: 170 T--------------------------KELGIAEDEV---TFKESVWEGG--GNAGESFE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                    R +E+  LVFM +E +   +   LP   +DTG GLER+ 
Sbjct: 199 VLV------------------RGLEVATLVFMHYEVK-DGKYVELPLKIVDTGYGLERIY 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------ 270
            + +     YD  +F   + A+ Q  G+     +++                        
Sbjct: 240 WMAKGSPTVYDA-VFGPFLSAARQRLGVPEPPADLLGKASVFFGQMDPEVLGLEKAYDEV 298

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                 V+ DH R+ S+++ADG++P+N G GY+ R ++RRA+  
Sbjct: 299 AKRIGVSPQEFRDVMRPQEALYVLADHSRTVSWMVADGVVPSNTGAGYLARLLIRRALRG 358

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
             L G   P ++ L       +   YPE+ +++ +I E +  E++++ + L     L+  
Sbjct: 359 LWLAGIEAP-LVELFDLHLKYLKEDYPEVWESRDVILELIDLEEKKYKEVLKAAPSLVKK 417

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            L   G+   L+ +   +LYD+ G+P ++ +D     G        F   L      AR 
Sbjct: 418 ALEKAGRR-ALSAEDLVELYDSFGVPPEVARDAARKLGADAEVPDDFYSRLA-----ARH 471

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            +   G G   K+   L +          DL R  +   ED      +            
Sbjct: 472 QARKAGGGEAAKVPIELAKVA--------DLPRTRELFYEDPYRRSARSK---------- 513

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                     V   + G+   VV D T FY E GGQ  D G     G   ++ DVQ+   
Sbjct: 514 ----------VLRVIDGR--YVVLDATVFYPEGGGQPADRGVLRHSGGEAKVVDVQRLGN 561

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I     ++E    R    +   ID+  R  L   H+ TH+L  ++  +LG H+ Q G+ 
Sbjct: 562 VIIH---VIEGPAPREGEEVYGEIDWDRRISLMRMHTGTHVLIQSIRRVLGKHIWQAGAQ 618

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
                 R DVTH K  T  E+  IE   N ++  NLPV   IM R +A A     +   G
Sbjct: 619 KDVPYSRLDVTHYKLPTEKEIAEIERLANQVVMSNLPVKALIMPRNEAEAKFGFIIYQGG 678

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +R++ +  ED   +    CGGTH+SSTGEI  + IV    I  G+ R    TG+
Sbjct: 679 VVPAREIRILRIGPED-SPYDVQACGGTHLSSTGEIGPIKIVRVERIADGVIRFIFTTGK 737

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A  ++   +  L ++A  L   + +V  ++ +  ++   L+  +  +KL  +  +L   
Sbjct: 738 YAVDYIQKMEADLSAVAKALGSGKEDVPAQLAKYLDKAADLERRY--KKLAASYAELLAE 795

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LD 848
           ++         +  +   +L  +   L  +  +  +     SK  +  +++   + L L 
Sbjct: 796 RL--------RVEGLPKADLAYL--ELDDEDLAKAVAAHATSKNPRLLLVVRRGDKLELY 845

Query: 849 RFNAVDLARLSAKVLGGG-GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +D+  ++A++   G  GGG    AQ  G      +  +  + + L
Sbjct: 846 SGREIDVGPIAAELRKHGFKGGGSKTFAQ--GVYQGDVEAILKALRNLL 892


>gi|222445824|ref|ZP_03608339.1| hypothetical protein METSMIALI_01468 [Methanobrevibacter smithii
           DSM 2375]
 gi|288869576|ref|ZP_05975048.2| alanine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
 gi|222435389|gb|EEE42554.1| hypothetical protein METSMIALI_01468 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861589|gb|EFC93887.1| alanine--tRNA ligase [Methanobrevibacter smithii DSM 2374]
          Length = 897

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 210/954 (22%), Positives = 370/954 (38%), Gaps = 168/954 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            +  I+  F EF +K GH  +    ++     D   +   S       + +G  KP    
Sbjct: 52  TLYEIQQVFREFLEKEGHTPIKRYPILAKRWRDDVFLVGASIFCFQPWVTSGMVKPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  VR     ND+DNVGRT RH T F M  +          Y+++  I+L  +   
Sbjct: 112 LEIEQPSVRL----NDVDNVGRTGRHMTCFTMGSHTVINTEENFIYWEDETIRLCHEFF- 166

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G++ ++I  I    ++WS       GPC E+
Sbjct: 167 --------------------------KYIGINTEEICFI---KSWWSGGGNE--GPCYEV 195

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVF+Q++  +  E+  +P   +DTG GLER+A 
Sbjct: 196 ------------------CVRGVELATLVFIQYKTLDNGEKEEIPIKVVDTGYGLERIAW 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN------------------NIVNHR---- 273
           + Q     YD   F  ++   +++T +K   +                  +I   R    
Sbjct: 238 ISQGTPTAYDA-CFAPVVDKLKELTDVKVNTDILARNAQIAGMMDIEDIGDIKELRQQVA 296

Query: 274 ---------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                +I DH R  +F++ADGI+P+N   GY+ R ++RR + + 
Sbjct: 297 NSLGITLDELLESAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFM 356

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + L   E  +  ++      +   YPE+  ++  I   +  E+ER+  T+ +G  ++   
Sbjct: 357 KELNMKES-LAEVMGIQLEFLTKFYPEIKDSEDHIMNIISLEEERYQSTIKKGTSIVKRS 415

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           +  L K+    +  D+   LYD HG+P + + +I            +F   +        
Sbjct: 416 IKRLKKEGKTEMPLDMLMDLYDAHGIPPETVVEIAGD-NFTVNVPDNFFTLVA------- 467

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
               G     T     S +  Y  T  + Y      +F                      
Sbjct: 468 ----GAHEKDTSNKKESFEIDYPETDLLFYKDFNQKEF---------------------- 501

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                  + E++       K  +VFD+T FY E GGQ  D G    DG  + I   +K  
Sbjct: 502 -------EAEVLGVVEKDGKNTLVFDKTVFYPEGGGQPSDVGAISVDGTVVNINYAEKVN 554

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +  H              +   ID+  R  L+ +HSATHL+  A   ILG H+ Q G+
Sbjct: 555 NVVLHHVDGDVDLDNFVGKKVEGKIDWNRRITLARHHSATHLIVAAARKILGEHIWQAGA 614

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
                  R D++H K I+  EL  IE   N+ +  N+ +  +   R++A +     L   
Sbjct: 615 QKGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIKFYTRDEAESLYGFKLYQG 674

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G      +RVV +   D        C GTHV  TG+I  + I     ++ G+ RI+   G
Sbjct: 675 GIVPGKSIRVVKIPGID-----VQACAGTHVLRTGDIGPIKINKTERVQDGVERIDFSAG 729

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-----LQLNV 783
             A   +  +++ L+  +   KV    +    +  + E++  +    K K     L++N 
Sbjct: 730 TAAVDSIQNENKLLRESSGIFKVDDDQLPKTCDRFFSEWKAQKNEIDKLKSEIASLKMNS 789

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
                 +I  +  +  +I + D KEL+ +        ++ ++++   + + K  ++   +
Sbjct: 790 LADDVTEINGLKVVKQLI-DADFKELQKIATDFTDNDKADVVLM--GNNDGK--IVGAAS 844

Query: 844 EDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           ++ +D      ++ + +A VLGGGGG GR  +AQ  GP     ++A+      +
Sbjct: 845 QNAIDAGIKVNEIIKKAAGVLGGGGG-GRLTLAQGAGPKCENMNEALNIAIDLI 897


>gi|70946295|ref|XP_742877.1| alanine--tRNA ligase [Plasmodium chabaudi chabaudi]
 gi|56522097|emb|CAH77105.1| alanine--tRNA ligase, putative [Plasmodium chabaudi chabaudi]
          Length = 917

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/931 (24%), Positives = 409/931 (43%), Gaps = 146/931 (15%)

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSA 148
           FG YFKE +I+ AWDLLT  + ++  RLY+T +  D+         EA K+W K   L  
Sbjct: 1   FGDYFKEESIEYAWDLLTNVYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDE 58

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            +I+     DNFW MAETGPCGPCSEI +D+           +++    +EIWN+VFMQ+
Sbjct: 59  KRILPFGMKDNFWEMAETGPCGPCSEIHYDRI-GNRDASDLVNKDDPSVLEIWNIVFMQY 117

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV--------- 259
            +  K+    LP   IDTGMGLER+ ++LQ   +NYD DLF  + +  +++         
Sbjct: 118 NKDEKKNMNKLPSPCIDTGMGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDIPNYQG 177

Query: 260 -TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
               +        +RVI DH+R ++  I+DG +P+NEGR YV+RRI+RRA+   + +   
Sbjct: 178 KINEEDPDKIDYAYRVISDHIRCATIAISDGCIPSNEGRNYVIRRIIRRAVRVGKQVFNI 237

Query: 319 EP---LMMHLLPALCTEMGSAYPEL--IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           +        L+ ++C  +G+ + +L   +    I+  +  E+  F KTL++G+   + ++
Sbjct: 238 KSNVLWFYKLVDSVCKILGNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKII 297

Query: 374 SHL-----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSR 428
                     + + +G  AF LY ++G P+D+++ +   + +  +++  FN   ++ +  
Sbjct: 298 KKCHQKQNNSNNLFSGKDAFDLYTSYGFPIDLIEIMCEEKNVK-LNMEEFNTLFKKHQLV 356

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
           +  ++  +           L  +        Y++L      K +     + P     N  
Sbjct: 357 SDTNNFKINK------IIDLPVEKAHEIKCKYNVLPTIDHHKYNWNNTFEIPKSKEENKD 410

Query: 489 SSIVKA---IVQQGEIVEEAV----------SGQKVE-------VVFDQTPFYAEAGGQL 528
           +  +K+   I+  G  ++E V          SG+K+E       ++  +T FY E GGQ+
Sbjct: 411 NLRLKSSVQIIYDGNFLDEIVHTDDDAKESSSGEKIENKQKKYALILKETNFYYENGGQI 470

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            DTG    + ++ Q+ +VQK      +H  ++  G ++   ++   +D++ R+ ++ NH+
Sbjct: 471 YDTGYIQNESMKFQVLNVQK-MNDYILHIGVLLNGHIKKNDAIETVVDFERRKLIACNHT 529

Query: 589 ATHLLHHALSTILGSHV------------------------------------SQNGSCI 612
           ATHLL+ AL  +L   V                                     Q GS +
Sbjct: 530 ATHLLNFALRKVLTDQVNQKKNKCDNNGEKKESSLEDSSETRNKLEGSSIFNCDQKGSLV 589

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671
             + LRFD +  + I    L  +E  +N+I+ + L V  + M+  ++    G  A+    
Sbjct: 590 DDEKLRFDFSFIENINMDVLNKLETEINNIVKEELNVSVKTMDLNESKKIKGIRAIFEED 649

Query: 672 YNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y D+V VV +      V            S  LCGGTH+ +T  I    I SE SI  GI
Sbjct: 650 YADKVNVVFISKNADDVLNNLDINYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGI 709

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE------------IWEEYR 768
            RI A+T ++A       ++ +            N +  V+             + ++ +
Sbjct: 710 HRINAVTNKKAEEINKKFNDIVAKYKHVFDDPNENKLTDVQNYKRILKEDKFLPLIKKNK 769

Query: 769 KLQ------------LIHAKRKL---QLNVEDLSCHKIADVNFM-SHIISEVDS--KELK 810
            L+              +A+++L    +++  L   +  D   +   + +E++   K L+
Sbjct: 770 ILEDLEIIEKDIVEKKKNAQKELFNKAMSIGKLYATENKDNILLDIKLFTEINGNQKVLE 829

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869
            V  A   K    +     I  E     ++ + + L  +   A    +   + + G  GG
Sbjct: 830 KVAQAYT-KANKNLSYFFIIHDENNTYCVLEIRDSLKGKGMQADTFMKQVMESVEGNSGG 888

Query: 870 GRPHMAQS-GGPN-GNKADQAIAGVASFLKK 898
           G+ + A    G + G    QA       +KK
Sbjct: 889 GK-NKAFGSSGKDKGTTIKQA---AEEVIKK 915


>gi|292558550|gb|ADE31551.1| Alanyl-tRNA synthetase, class IIc [Streptococcus suis GZ1]
          Length = 512

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 179/466 (38%), Positives = 277/466 (59%), Gaps = 24/466 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M N+  + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P  
Sbjct: 1   MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  +
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            F   + +LY+T Y +D +++  W  + G+    +I +   DNFW +   GP GP +EIF
Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIGA-GPSGPDTEIF 172

Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228
           FD+G        G        E +RYIEIWN+V  QF       + E   LP  +IDTG 
Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIA 287
           GLER+A + Q    N++ DLF  +I+  E+++G  Y+ + + ++ +VI DH+R+ SF I 
Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNMSFKVIADHIRALSFAIG 292

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           DG LP NEGRGYVLRR++RRA  + + LG TEP +  L+  +   M S YPE+++ +  I
Sbjct: 293 DGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAFI 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405
           E+ ++SE+E F +T+  G    + ++  L  +    ++G   FKLYDT+G  +++ +++ 
Sbjct: 353 EKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDIFKLYDTYGFQVELTEELA 412

Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451
             RG+  +DI  F  A++EQ+ RARA  +  GS   +   + L +K
Sbjct: 413 EHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETWLLSQK 457


>gi|150403315|ref|YP_001330609.1| alanyl-tRNA synthetase [Methanococcus maripaludis C7]
 gi|189082112|sp|A6VJ32|SYA_METM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150034345|gb|ABR66458.1| alanyl-tRNA synthetase [Methanococcus maripaludis C7]
          Length = 892

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 215/953 (22%), Positives = 393/953 (41%), Gaps = 177/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             + +   F  FF + GH  +  S ++     D  L+   S  V    +  G  KPV   
Sbjct: 60  TYNEMVREFTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDDYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +D + +                             T  +++W     G  GPC E+
Sbjct: 175 NRLGIDGKTI-----------------------------TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++    E   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKV-GSEYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK----------------YEGNNIVNHRV----- 274
             Q     Y+  LF  +I+  ++  G+                  +  N+ + RV     
Sbjct: 245 ASQGTPTVYE-SLFSEVIEKLKEDAGIPGVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL + K  I + L SE++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSI-KDIISMQLENMKEIYPELSEMKEYIMDVLDSEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + +   +   +  D   +LYD++GLP +I++D++                        + 
Sbjct: 423 MAASKSE---ITLDDLIELYDSNGLPPEIVKDVVDELN--------------------KK 459

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     +  +  + E++   +       +     KE  +V   +  +      + +
Sbjct: 460 GKKTIAITVPDNFYTIVAERHEEEKPEEVVSTK-----KELPEVEVSETELLFFKHPTQV 514

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                   E   + +   +  VV D+T FYAE GGQ  D G   G    +++ DVQKK  
Sbjct: 515 --------EFEAKVLKTVEKYVVLDKTLFYAEGGGQKYDIGQING----IEVIDVQKK-N 561

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           GI  H    +    +    +  T++++NR +L  NH+ATH+++ A + +LG H+ Q GS 
Sbjct: 562 GIVFHKVS-DISKFKEGDIVKGTVNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  +  R D+TH + I+  ++K IE   N+I+   +PV +  M+R DA       +   G
Sbjct: 621 VDTEKGRLDITHYERISREQVKEIERIANEIVLSKMPVNSTFMDRNDAEQKYGFTIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R++ +E  D        CGGTH S+T EI  + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIIEIEGTD-----VEACGGTHCSNTSEIGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAKRKLQLNVEDLS 787
            + S +   ++ L   A  L +    +   V+  +EE+++ +      ++K+   V+   
Sbjct: 736 GSVSEIAVLEDTLIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYEL 795

Query: 788 CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             K         ++ +V     EL S+ D L   + + +I+L+  +      +L    E+
Sbjct: 796 ADKFEKYGNYEVLVEQVSGTPNELMSIADNLA--VGNKLIVLMNEND----YLLCKRGEN 849

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +    +  +L R        G GGG+ ++AQ  G      +Q    +   L K
Sbjct: 850 V--ELSMKELIRNI------GKGGGKDNLAQ--GKYSENKEQITEKIIQILNK 892


>gi|260822503|ref|XP_002606641.1| hypothetical protein BRAFLDRAFT_72608 [Branchiostoma floridae]
 gi|229291985|gb|EEN62651.1| hypothetical protein BRAFLDRAFT_72608 [Branchiostoma floridae]
          Length = 1128

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/829 (27%), Positives = 356/829 (42%), Gaps = 98/829 (11%)

Query: 150  KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            +I+     DNFW M + GPCGPC+EI +D            + +    +E+WNLVFMQF 
Sbjct: 309  RILPCGMRDNFWEMGDVGPCGPCTEIHYDH-RGQRDASRLVNTDSPEVVELWNLVFMQFN 367

Query: 210  QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---- 265
            +++      LP+  +DTGMGLER+  V+Q K +NYD DLF  L+ A  + T ++      
Sbjct: 368  RESDGTLRPLPRHVVDTGMGLERLVAVMQGKLSNYDTDLFSPLLHAIHKGTKVQPYSGLV 427

Query: 266  -----GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTE 319
                 G     +R+I DH+R+ +  IADG++P  + R  VLR I+RRA+ YA   LG  E
Sbjct: 428  GGEDVGGVDEAYRIIADHVRTLTIAIADGVMPGQQWRELVLRTILRRAVRYAQERLGAPE 487

Query: 320  PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
             L+  L+P +   +G A+PEL+  +  + +T+  ++  F   L++G  L+   +  L K 
Sbjct: 488  GLVASLVPVVVQNLGEAFPELLSNQEKVMDTINEDEALFLSNLEKGKKLMSKTIRKLDKS 547

Query: 380  EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
                 +V + L+++ GLP D++Q ++  RG    D+        E  SR    +L   + 
Sbjct: 548  AFFPSEVGWFLHNSLGLPTDLVQSMVTDRGCRM-DM--------EHYSRIEGDALQKKAQ 598

Query: 440  TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
              +       + +   Q     +      +K + + L +    D  +     V ++  +G
Sbjct: 599  GLQIAQVPTLDAHSLQQLQALGVPPTDNSLKYNYR-LTESGKYDFPSP-EGRVLSLYMKG 656

Query: 500  EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            E+V     G    V+ D++ FY EAGGQ  D G    + + +  TD  +   G  +H   
Sbjct: 657  ELVGSVGPGDVCSVILDRSCFYPEAGGQESDQGNMTKNEVVVFTTDNVQVCGGYVLHQGQ 716

Query: 560  VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
              +  L  + ++ L ID + R      H+ATHLL+HAL  +LG    Q GS + P+ LRF
Sbjct: 717  A-QTSLTVDDTVQLNIDQERRLSCMQRHTATHLLNHALREVLGEACEQRGSHVGPNRLRF 775

Query: 620  DVTHSKPITSAELKSIEDNVNDII-AQNLP---------------------VVTRIMNRE 657
            D +     + AEL+ +E+ V  ++  Q+LP                     V TR +   
Sbjct: 776  DFSVKSLPSPAELRRVEETVQAMVDRQSLPSPAELRRVEETVQTMVDRQECVYTREVPLS 835

Query: 658  DAIASGAAALLGTKYNDRVRVVSVEYE-----------DGGVHSSALCGGTHVSSTGEIM 706
             A        +  +Y D VRVVSV                 + S  LC GTHV +T  I 
Sbjct: 836  QAKEVEGIRTMDEEYPDPVRVVSVGTPVEELMTNPTSGAASLTSVELCCGTHVHNTASIK 895

Query: 707  LLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKLKSLASFLKVSQ------- 753
               I  E     G RRI A+TG  A         L  + + L+ L    + S        
Sbjct: 896  AFVISYERRNEIGSRRIIAVTGDEAVEARKTGAELEERAKTLERLVLQEETSSLEEMEGV 955

Query: 754  ----GNVVGRVE----------EIWEEYRKLQLI--HAKRKLQLNVEDLSCHKIA----- 792
                G ++ RV+          E+     +LQ     A +KL+    +    K+A     
Sbjct: 956  YRDVGKLIRRVDTASLPLWKRLELQVSLDQLQSQANRAVKKLRQQNVETVAQKVARTLVD 1015

Query: 793  ---DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLD 848
               DV  ++      + K L++ +    +      IML G         V   V E +L 
Sbjct: 1016 RNEDVVLVTDTGLGPNLKVLRTTVRICSELAPDTPIMLFGTDPRTASVRVACKVPEAMLS 1075

Query: 849  R-FNAVDLA-RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            R   A     ++ A +   G G  R   A + G N +  + AI     +
Sbjct: 1076 RGLGARTWLDQVMADIKAKGRGDER--SATAAGGNPSGTEAAITAARRY 1122



 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 96/157 (61%), Gaps = 14/157 (8%)

Query: 1   MSNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           + +   IR TFL+F++ K  H L+PSSS++P NDPTL+F N+GM  FK +  G   P   
Sbjct: 50  VLSSQEIRKTFLDFYKVKYDHLLVPSSSVVPRNDPTLLFINAGMNQFKPLIQGTVDPRSD 109

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114
              Y+ V   QKC+RAGGKHNDL++VGR   HHT FEMLGN+SFG +FK  A  + W+LL
Sbjct: 110 MAKYRRVVNSQKCIRAGGKHNDLEDVGRDCYHHTVFEMLGNWSFGDFFKREACAMTWELL 169

Query: 115 TKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           T  + +   RLY+T +  D         E  ++W  +
Sbjct: 170 TDVYRIPADRLYVTYFGGDPDLGLEADLECREIWASL 206


>gi|289677327|ref|ZP_06498217.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 453

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 199/485 (41%), Positives = 277/485 (57%), Gaps = 34/485 (7%)

Query: 190 SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
             E+G+RYIEIWN VFMQF +        LP  S+DTGMGLER++ VLQ   +NY+IDLF
Sbjct: 1   PEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVSAVLQHVHSNYEIDLF 60

Query: 250 KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           + L+ AS +  G     +N  + +V+ DH+RS  FLIADG+LP+NEGRGYVLRRI+RRA 
Sbjct: 61  QSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRAC 118

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+ E+E+F KTL++GL +L
Sbjct: 119 RHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGEEEQFAKTLEQGLKIL 178

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           +  L+ L K  ++ G+V FKLYDT+G P+D+  DI   R L  +D   F + ++ QR RA
Sbjct: 179 EQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LDEAGFEREMDAQRVRA 236

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R+ S      +    + SL +   ATQF GY    GS                       
Sbjct: 237 RSAS------SFGMDYNSLVKVDVATQFTGYSATTGS----------------------- 267

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           + V A+ ++G+ V     G++  V+ D TPFYAE+GGQ+GD+G       R  ++D  K 
Sbjct: 268 ASVVALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGFLQAGDARFDVSDTTK- 326

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G F+HH +V  G L     +   +  + R    +NHSATHLLH AL  +LG HV Q G
Sbjct: 327 TGGAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLLHAALRQVLGEHVQQKG 386

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S +    LRFD +H + I   +L+++ED VN  I +N  V+T   + + A   GA AL G
Sbjct: 387 SLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEETDIDTAKKKGAMALFG 446

Query: 670 TKYND 674
            KY D
Sbjct: 447 EKYGD 451


>gi|156936991|ref|YP_001434787.1| alanyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|205830070|sp|A8A8X8|SYA_IGNH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|156565975|gb|ABU81380.1| alanyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 901

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/950 (21%), Positives = 384/950 (40%), Gaps = 169/950 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++   +  F++FF++ GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 56  SLRDAKREFIKFFEEKGHVPVEPRPVVARWRDDLFLTIASIVVFQPHVTKGLVPPPANPL 115

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ C+R      D+DNVG T  RH T F M G+ +F       Y+KE  ++LA++  T
Sbjct: 116 VIVQPCIRL----EDIDNVGLTLGRHMTGFHMGGHHAFNYPDNWVYWKEETVKLAYEFFT 171

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +   + +  L                                +++W     G  GP  E+
Sbjct: 172 ERIGIPEELL-----------------------------NFKESWWEGG--GNAGPSFEV 200

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFILPKMSIDTGMGLER 232
                                 +E+  LVFMQ++      +++   +    +DTG G+ER
Sbjct: 201 TV------------------AGLELATLVFMQYDVVEENGQKKYVPMKLKVVDTGYGIER 242

Query: 233 MATVLQEKTNNYDI--------------------------------------DLFKHLIQ 254
           +A   Q+    +                                        +  + + +
Sbjct: 243 IAWFTQKTPTAFHAVYGELLHEFHKRLGVEEPPDELLYELVRSAGLMDPERPETLERVYK 302

Query: 255 ASEQVTGMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
            + +  GM+ +    ++ R      ++DH R+  +++ADGI+P+N G GY+ R ++RR +
Sbjct: 303 RASEKLGMRVDEIREIHSRASLVYQVLDHTRTLMWMLADGIVPSNVGEGYLARLVIRRTL 362

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              + L    P +  LL          YP   + K  I + +  E ++F +TL +G  ++
Sbjct: 363 RALKKLKADVP-LSELLELQINYWKDDYPRAWKNKDYILDVVEFEQKKFEETLKKGRNIV 421

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
             ++    K + +  D   +LYD+HG+P DI+ +I    G+      +F   +  +  + 
Sbjct: 422 IRLI---KKKKQITLDDLVELYDSHGIPPDIVSEIAKEMGVRVEVPHNFYSIVASRHQKT 478

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
                G                      +  +++  +K     R++  + P +       
Sbjct: 479 VHKVKGAEEKGK----------------LPPEIIEWAKGFPPTRRLFHEDPYM------- 515

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                     E   + +   +  V+ D+T FY E GGQ  DTG         ++ DVQK 
Sbjct: 516 ---------KEFDAQVIGSNRNYVILDKTAFYPEGGGQAADTGVIASGDESYRVVDVQKV 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            + I      V          +V  ID++ R +L  +H+ THLL  AL  +LG HV Q G
Sbjct: 567 GDVIVH----VLDRDYSGGKVVVGRIDWERRYRLMRHHTGTHLLLGALRKVLGDHVWQAG 622

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +  TP+  RFD TH KP+T  E++ IE+  N +I +   +    + R +A A    ++  
Sbjct: 623 AEKTPEKARFDFTHHKPLTREEVRKIEEVANKVIDERRKIRAFTLPRNEAEARYWFSIYQ 682

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G   +  +R+V +E  D        C GTH+S+TGE+  L I+S   I+ G+ R+E + 
Sbjct: 683 GGVPMSKDIRLVEIEGWD-----VEACFGTHLSNTGEVGSLKIISTRKIQDGVVRVEFVA 737

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G R        ++ ++  +  L  +   +V R++ + +E   ++   A+ + +L  E L 
Sbjct: 738 GTRVAEEAAKMEDLIREASEKLSTNPEMLVKRIDALQKELENVKKTVAEYRKRLVSEYLK 797

Query: 788 CHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             K  D + ++   +   D + ++ V+ AL     + +I+      + +  +        
Sbjct: 798 AAKALDGIKYVK--LDLRDPELVQEVLRALSSDSPAAVIV------DGRVELAA------ 843

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +     R   + +G   GGG+ + A     +  K  + ++ +A+ L
Sbjct: 844 PKGVDVGKAVREVVREVGC-KGGGKGNRATVVCESEEKVVELLSKLAAKL 892


>gi|159904900|ref|YP_001548562.1| alanyl-tRNA synthetase [Methanococcus maripaludis C6]
 gi|205830141|sp|A9A6Q2|SYA_METM6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|159886393|gb|ABX01330.1| alanyl-tRNA synthetase [Methanococcus maripaludis C6]
          Length = 892

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 209/953 (21%), Positives = 391/953 (41%), Gaps = 177/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             + +   F  FF + GH  +  S ++     D  L+   S  V    +  G  KPV   
Sbjct: 60  TYNEMVKEFTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +   +D + +                             T  +++W     G  GPC E+
Sbjct: 175 QRLGIDGKTI-----------------------------TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++    +   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKVGN-DYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV----------------NHRV----- 274
             Q     Y+  LF  +I+  ++  G+      I+                + RV     
Sbjct: 245 ASQGTPTVYE-SLFSEIIEKLKEDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL + K  + + L +E++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSI-KDIIAMQLENMKEIYPELSEMKEYVMDVLDAEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + +   +   +  D   +LYD++GLP +I++D++                        + 
Sbjct: 423 MAASKSE---ITLDDLIELYDSNGLPPEIVKDVVDELN--------------------KK 459

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     +  +  + E++   +       +      E  +               + 
Sbjct: 460 GKKTIAITVPDNFYTIVAERHEEEKPEEVVSTKKELPELEVSETELLFFKHPTQAEFEAK 519

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  I ++              VV D+T FYAE GGQ  D G        ++++DVQKK  
Sbjct: 520 ILKIAEK-------------YVVLDKTLFYAEGGGQKYDIGQLND----IEVSDVQKK-N 561

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           GI  H    +    +   ++  T++++NR +L  NH+ATH+++ A + +LG H+ Q GS 
Sbjct: 562 GIVFHKVS-DISKFKEGDTVKGTLNWENRLKLMRNHTATHVINAAATRVLGKHIWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  +  R D+TH + I+  ++K IE   N+++   +PV +  M+R DA       +   G
Sbjct: 621 VDTEKGRLDITHYERISREQVKEIERIANEMVLSKMPVNSTFMDRNDAEQKYGFTIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R++ +E  D        CGGTH S+T E+  + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIIEIEETD-----VEACGGTHCSNTSEVGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAKRKLQLNVEDLS 787
            + S +   ++ L   A  L +    +   V+  +EE+++ +      ++K+   V+   
Sbjct: 736 GSVSEIAIIEDTLIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYEL 795

Query: 788 CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             K   V     ++ +V     EL S+ D L   + + +I+L+  S      +L    E+
Sbjct: 796 ADKFEKVGDYEVLVEQVSGTPNELMSIADNLA--VGNKLIVLMNESD----YLLCKRGEN 849

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +    +  +L R        G GGG+ ++AQ  G      +Q    ++  L K
Sbjct: 850 V--ELSMKELIRNI------GKGGGKDNLAQ--GKYSETKEQITEKISQILNK 892


>gi|312373153|gb|EFR20960.1| hypothetical protein AND_18235 [Anopheles darlingi]
          Length = 998

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 214/789 (27%), Positives = 347/789 (43%), Gaps = 83/789 (10%)

Query: 2   SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
            + + IR  F+++F  K+ H L+ SSSL+P +D T+ F N+GM  FKN+F G        
Sbjct: 37  PSANEIRRQFIDYFTIKHNHRLIRSSSLVPFSDGTIAFVNAGMNQFKNVFLGTADRPCPR 96

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
               QKCVR GGKHNDL  VG  + HHTFFEMLGN+SFG YFK  A ++A DLL   + +
Sbjct: 97  AVNSQKCVRVGGKHNDLSVVGTDSYHHTFFEMLGNWSFGDYFKREACEMACDLLRTVYHI 156

Query: 121 DQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D  R+Y+T +          DEE   +W  + G+  ++++     DNFW M  +GPCGPC
Sbjct: 157 DMERVYVTYFGGDARLNLPADEECRDIWLSL-GIPRERVLPFGARDNFWEMGNSGPCGPC 215

Query: 173 SEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDT 226
           +EI  D  +            +       EIWN+VF+Q+ +    +      LP+  +DT
Sbjct: 216 TEIHLDLSDQYRDTGSRRQYVNAGLPDLTEIWNIVFIQYNRSLEGDGGAIRNLPQRHVDT 275

Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286
           GMGLER+   LQ K +NYD DLF  ++Q  +QV            HR  +          
Sbjct: 276 GMGLERLVAHLQGKLSNYDTDLFTPILQRIQQV-------QIAGTHRWHIH--------- 319

Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
                       + LRR++R+++  A        L+   +P +   +G  YPE+      
Sbjct: 320 ------HIIPICHKLRRVIRKSLALASGTFERPKLLEETIPVVVETLGEMYPEMGNNLST 373

Query: 347 IEETLRSE----DERFGKTLDRGLVLLDG-----------------VLSHLGKDEI--LN 383
           + + +  E    D+   K       LL                    +  L +  +  L+
Sbjct: 374 VLQIIEHEQHSYDKLCSKRSAETATLLKCYPQLEESEVLDHAGLPGAIKELVESNVSRLD 433

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G    K+YDT+G    + +++L   G    +++ F+    +    A     G       +
Sbjct: 434 GVKIHKMYDTYG----LDEELLVKLG----EMLKFSLDFRDYERYAGELKHGFKHELASR 485

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
           +   L         I    L  ++  ++       +  I      S+ V  ++       
Sbjct: 486 LEERLSAFQQLRDSIEGAQLEATRCERKYNYAYNAEKRIYEVAPCSTRVSLLLDD----- 540

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
              +     VV +++ FY E+GGQ  DTG  I     + I          F+ H+I ++ 
Sbjct: 541 --PARDLWHVVTERSNFYCESGGQQSDTGRLILPEGNVSIEITSVNDHNGFIVHSIAKQP 598

Query: 564 ILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            +R      + L +D   R  L++NH+ATHLL+  +  ++   + Q  S +T  GLR ++
Sbjct: 599 NIRLSIGDPVELQVDASRRTSLTLNHTATHLLNAIVRKVVPLPMCQRSSSVTEKGLRLEL 658

Query: 622 THSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RVV 679
             S   +T  ++ +IE  +  +I +N PV  ++ N  +   +    + G  Y +R  RV+
Sbjct: 659 AISGDKLTLEQIAAIESEIRSVIDRNEPVSVKVCNATELDLTSVTIVPGETYPERGLRVI 718

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           S+    GG  S  LC GTH + TGE+    I S +  + G     A+ G  A+   +   
Sbjct: 719 SIG---GGYTSQELCCGTHATGTGELQDFAITSVTQSKNGCFTFHAVAGPAAKKVHLLGT 775

Query: 740 EKLKSLASF 748
           +    +A  
Sbjct: 776 QIQNDVAQL 784


>gi|156543880|ref|XP_001606952.1| PREDICTED: similar to alanyl-tRNA synthetase [Nasonia vitripennis]
          Length = 954

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 257/959 (26%), Positives = 392/959 (40%), Gaps = 166/959 (17%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
           IRT FLE+F KN H ++ SS ++P NDP++ F N+GM  FK +  G   P    V   QK
Sbjct: 11  IRTEFLEYFAKNNHAIVRSSPVVPLNDPSIPFVNAGMNQFKGVLLGDHSPPAFRVANSQK 70

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R GGKHNDLD VG  + HHTFFEMLGN+SFG YFKE A + AW+LLT+ + + +  LY
Sbjct: 71  CIRVGGKHNDLDIVGNDSYHHTFFEMLGNWSFGDYFKEEACKYAWELLTEIYGIKKDFLY 130

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T +  +E        E  ++W KI G+  D I+     DNFW M  TGPCGPC+EI  D
Sbjct: 131 VTYFKGNEKLNLQPDLECKEIWLKI-GVPKDHILPFGIEDNFWEMGPTGPCGPCTEIHID 189

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
                       ++  +   E+WN+VF+Q+++        L K  IDTGMG ER+ TVLQ
Sbjct: 190 HTMQSKNQASRVNKGHDDLTELWNVVFVQYQRLQNGRIIPLLKKHIDTGMGFERLVTVLQ 249

Query: 239 EKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVIVDHLRSSSFLIADG 289
           EK +NYD D+F+ L +A E+ T         G   +      +R++ DH R  +  +ADG
Sbjct: 250 EKRSNYDTDIFQPLFEAIEKFTHAPKYQGRFGTADKNKIDTGYRILADHARMVTVALADG 309

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           +LP    +   LRRI+R+A+  +     T  L+  L   +   +G  YPE+ +    I+ 
Sbjct: 310 MLPDKNQK---LRRILRKAIDISEESFKTSQLLSELTNHVAFSLGDVYPEIYKNLNKIQH 366

Query: 350 TLRSEDERFGKTLDR----------------------------GLVLLDGVLSHLGKDEI 381
            ++ E+E      +                             G   L   L    K   
Sbjct: 367 IIQYEEEVMKSARNNAAKNWRKVVENRPELSAITDATLPGLTAGYYELQTFLKSEYKVNS 426

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL----- 436
           L GD A+KLYDT+GL  + +  +     +   D+ +F +A+E+ R R+R  +  L     
Sbjct: 427 LPGDFAYKLYDTYGLNSETICKLAEIESIP-FDLKTFKEAIEKARERSRHKADKLNDEII 485

Query: 437 --------GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF---MKEDRKVLCQKPPIDLT 485
                    SG   K    LK  Y  T+  GY           M  +  ++ +       
Sbjct: 486 SEYSLNLLESGNVPKTDDLLKYDYTITEK-GYQFPVVKCKIVGMIMNGNLISEPETAFNV 544

Query: 486 NGVSSIVKAIVQQ-GEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
           +   +IV+A V   G IVE      +  +V ++ D+TP Y+ AG Q+ D G      +  
Sbjct: 545 DESQTIVEATVTNSGNIVESSAVVTTNAEVGIILDKTPAYSTAGSQISDKGHIQIKDLLF 604

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
               V+K      +H                  +D+    + +  H              
Sbjct: 605 NFEKVRK-IRDYVIHIGHF--------------VDWD---EANPEHELQ----------- 635

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
              V         + +R         T          +N  + Q LPVV           
Sbjct: 636 ---VGDECLISIDEKIRLGAMRHHTATH--------LLNASLQQILPVV----------- 673

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                           +  VE     + S   C GTHV  TG++    I S  S+ +   
Sbjct: 674 -----------GQHTGIRIVEINSPALSSKEACCGTHVHKTGDLEHFCITSLKSLGSVSM 722

Query: 722 RIEAITGQRAR-----------------SHLMGQDEKLKSLASFLKVSQGNVVGRVEE-- 762
            ++AITG  AR                 + L   +  LK L   +   +  ++ + +   
Sbjct: 723 SLKAITGPAARLARLAGDNLKDRILNIENDLKAGNATLKELEFRVNSEKQELLDKKKRTR 782

Query: 763 -----IWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKEL 809
                + E   KL+L+        R+L  N  +    K+ D   + F+ H +   ++   
Sbjct: 783 FPYIVVQESLEKLELLSKNIRIRDRELTRNTIEEEIKKLLDSSSLPFVVHCLQPTNTSLE 842

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGG 867
              +  + K       +LV +  + K      V E L  D FNA        +V    G
Sbjct: 843 NVSLKNIIKLCPPSTPVLVIVHCKSKVKASCFVPEKLQTDVFNAKTWMEEILQVFQSKG 901


>gi|288559749|ref|YP_003423235.1| alanyl-tRNA synthetase AlaS [Methanobrevibacter ruminantium M1]
 gi|288542459|gb|ADC46343.1| alanyl-tRNA synthetase AlaS [Methanobrevibacter ruminantium M1]
          Length = 910

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/966 (21%), Positives = 377/966 (39%), Gaps = 177/966 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++  I+ TF  F +K GHE +    ++     D   +   S       + +G  +P    
Sbjct: 52  DLYGIQETFRTFLEKEGHEPISRYPILAKRWRDDVFLVGASIFCFQPWVTSGLVEPPANP 111

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q  +R     ND+DNVGRT RH T F M  +          Y+++  I+L  +   
Sbjct: 112 LEVEQPSIRL----NDVDNVGRTGRHMTCFTMGSHTVINKPDNFIYWEDETIRLCHEFF- 166

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G++ +++   T   ++W        GPC E+
Sbjct: 167 --------------------------KSIGINTEEL---TFIKSWWKGGGNE--GPCYEV 195

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                               R +E+  LVFMQ++     ++  +P   +DTG GLER+A 
Sbjct: 196 ------------------CCRGVELATLVFMQYKTLENGDKEEIPIKVVDTGYGLERIAW 237

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK------------------YEGNNIVNHR---- 273
           + Q     YD   F  ++   +++T +                    +  +I + R    
Sbjct: 238 ISQGTPTAYDA-CFAPVVDKLKEITNVSVNEEILARNAEIAGMMDIEDIGDIRDLRQQVA 296

Query: 274 ---------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                +I DH R  +F++ADGI+P+N   GY+ R ++RR + + 
Sbjct: 297 DSLNISLEEYLENAEPMEAIYIIADHTRCLAFMLADGIIPSNVKEGYLARLVLRRTIRFM 356

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           + L   E  +  ++      +   YPE+ +++  I   +  E+ER+ KT+++G   +   
Sbjct: 357 KELEMEES-LSDIMAIQLDFLREFYPEIAESQEHIMNIINLEEERYAKTIEKGKKTVKRT 415

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILC-ARGLAGIDIISFNQALEEQRSRA 429
           +  L K+    +  +    LYD  G+P + ++++    +        +F   + +     
Sbjct: 416 IKRLKKEGKTSMPLETLIDLYDAQGMPPETVEELASGDKDFEVFVPDNFFTIVADMHEED 475

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +                + +     T+   Y             K + QK          
Sbjct: 476 KVAKKE-----------TFELDVPETELDFY-------------KDIYQKES-------- 503

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                    G I+E       + ++ D+T FY E GGQ  D G    +G   ++   +K 
Sbjct: 504 --------DGTIIEVVEKDGNLNIILDRTIFYPEGGGQPSDIGIISIEGTIYEVVYAEK- 554

Query: 550 AEGIFVHHA----------IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +G+ +H            +VE         + + I++  R  L+ +H+ THL+  A   
Sbjct: 555 LDGVVLHRIATKEDEDVASLVEDLRKYIGTEVHMAINWNRRITLARHHTGTHLVIAAARK 614

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           ILG H+ Q G+       R D+ H K IT  EL  IE   N+ +  N+ +    ++R+DA
Sbjct: 615 ILGQHIWQAGAQKGLARSRIDLAHYKRITIGELDEIEKLANEYVMMNIDLDINWLSRDDA 674

Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L   G     ++RVV +   D        C GTH+S TGE+  + I     ++
Sbjct: 675 EKKYGLILYQGGVVPGSQIRVVKIPGID-----VQACAGTHLSRTGEVGPIKINKTERVQ 729

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RI+   G  A   +      +K  +    V+   +    E  + E++  +   A+ 
Sbjct: 730 DGVERIDFSAGLAAIDSIQNDKAIIKESSDVFSVTNDQLPKTCERFFNEWKAQKNEIARL 789

Query: 778 KLQLNVEDLS--CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKE 833
           + ++    +S       +VN +  +   +D+  KEL+ +           + ++   + E
Sbjct: 790 QKEIANLKVSTLAENAFEVNGLKVLKEILDANIKELQKIATDFTD--NDKVDLVFIGNNE 847

Query: 834 KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            K  ++   +++ +D      ++ + +A +LGGGGG GRP +AQ  GPN +K   A+   
Sbjct: 848 GK--IVGSASKNAIDSGVQVNNIIKEAASLLGGGGG-GRPTLAQGAGPNADKMADALDLA 904

Query: 893 ASFLKK 898
              L K
Sbjct: 905 VELLNK 910


>gi|159042453|ref|YP_001541705.1| alanyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
 gi|205830009|sp|A8MBI2|SYA_CALMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|157921288|gb|ABW02715.1| alanyl-tRNA synthetase [Caldivirga maquilingensis IC-167]
          Length = 899

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/948 (21%), Positives = 369/948 (38%), Gaps = 169/948 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+K GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 63  SIKDVRERFLSFFEKRGHTRVARYPVVARWRNDVYLVGASIYDFQPWVTEGVVPPPANPL 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+    ++ A +  T+
Sbjct: 123 TISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNFPGKEIYWINETVEYAHEFFTR 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E            + +DE  +                    +N W     G  G   E+ 
Sbjct: 179 ELG----------FRDDEVTY-------------------KENIWEGG--GNAGESFEVL 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                              R +E+  LVFM +      E   +P   +DTG GLER+  V
Sbjct: 208 V------------------RGLELATLVFMHYRVIGD-EYREMPIRIVDTGYGLERIYWV 248

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------- 271
           L  K   Y+  +F+  +  + Q+ G+      ++                          
Sbjct: 249 LTGKPTIYEA-VFEGFLNKARQLLGLPKPDEKVLASLAIHMGQLDPEVLALDKAYVEVAK 307

Query: 272 ------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                               V+ DH R+ S++I DG++P+N G GY+ R ++RR + Y  
Sbjct: 308 RIGIDSSELINFIKPQEALYVLADHSRTVSWMINDGVIPSNSGVGYLARLLIRRMLKYMH 367

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           ++G   P +  +       + + YPEL ++  LI + +  E+ ++   + +   L+  + 
Sbjct: 368 VIGAQVP-LTEIFNTHLNYLINDYPELKESMQLILDLVDLEEAKYKSAISQLPKLISRI- 425

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                   L  +    LYD+HG+P ++++D    RG+      +F + L  +  +     
Sbjct: 426 -----KGELTINDLINLYDSHGIPPEVVRDEAAKRGVKVNVPDNFYEMLAARHQKPAKGE 480

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
            G     T      L                  +   ED                     
Sbjct: 481 EGNRLDVTADDVIDL--------------PPTRELFYEDTYA------------------ 508

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
              +    V + + G+   +V D T FY E GGQ  D G    +G+  ++ DVQ+    I
Sbjct: 509 --FEGKAKVLKVIKGK--YIVLDSTIFYPEGGGQPADRGVLRFNGVEAKVVDVQRVGPVI 564

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
                +++         + + ID + R  L   H+ TH+L  ++  +LG HV Q G+   
Sbjct: 565 VH---VIDGPTPGVGDVVEMRIDSERRLGLMRMHTGTHILLQSIRRVLGKHVWQAGAQKD 621

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTK 671
               R DVTH +  T  E+K IE+  N+++  +LPV   +M R +A A     +   G  
Sbjct: 622 IPLSRLDVTHYRLPTPDEVKRIEELANEVVLSDLPVKAELMPRNEAEAKYGFIIYQGGVV 681

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
               VR+V V  E    +    CGGTH+  T  I L+ IV    I+ G+ R    TG+ A
Sbjct: 682 PGGEVRIVKVG-EGNDTYDVEACGGTHLDRTSRIGLIKIVKVDKIQEGVIRFIFTTGKYA 740

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSC 788
             ++   + KL S AS L+V +  V   V+ + +E    +    + A++ ++ ++ ++  
Sbjct: 741 LDYVRNLEGKLDSAASKLRVGRDEVDEAVDRLIKELNNAEERSRVLARKAIEADLANIVK 800

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             I  V+     +   D   ++  +  L  K    +++L+  ++ +  +           
Sbjct: 801 SMIT-VSGFKVAVYYED-YWVRDYLQELASKYPGDVLVLIHGNEYQVYT---------NG 849

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +  A+D+A++  ++ G GG  G    AQ    N  K D  +  +   L
Sbjct: 850 KVKAIDVAKVLNELGGKGG--GSGTFAQGVFNNPVKQDDVVNTIKRKL 895


>gi|284163328|ref|YP_003401607.1| alanyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284012983|gb|ADB58934.1| alanyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 925

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 223/968 (23%), Positives = 383/968 (39%), Gaps = 179/968 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           +++ +R  FL +F+ N HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLTEMREVFLSYFEDNDHERIEPYPVAANRWRDDVLLTQASIYDFQPLVTSGETPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                 ++   
Sbjct: 121 LTVSQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNTR--------------EDIPE 162

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+   +  VY +D         +  L AD I  +T  ++ W     G  GP  E+ +   
Sbjct: 163 DKYAYHGEVYWKDRTVELCDGLLQELGAD-ISEVTYIEDPWVGG--GNAGPAIEVIY--- 216

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGLER 232
                          R +EI  LVFM  EQ  + E  +        +    +DTG GLER
Sbjct: 217 ---------------RGLEIATLVFMCMEQDPEGEYELKDGNRYSYMDTYIVDTGYGLER 261

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------------------------ 268
              + Q     Y+  ++  +I   +   G+ Y                            
Sbjct: 262 WTWMSQGTATVYEA-IYPEMIDFLKDNAGLSYTDEETEIVSRAARLSGQLDIDDVDDVEA 320

Query: 269 ----------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                 + +   I DH R+ ++++ DGI+P+N G GY+ R ++R
Sbjct: 321 ARGEIAAEIGVSVDELRDLVEPLEDIYAIADHCRTLAYMLGDGIVPSNVGTGYLARMVLR 380

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R        G   P +  L+      +        + +  I + +R+E E++ +TL+RG 
Sbjct: 381 RTKRLCDNAGVDAP-LDELVDMQAQRLEY------ENRDTIRDIVRTEVEKYRETLERGG 433

Query: 367 VLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
             ++ +      K E +  +   +LYD+HG+  D++++I    G        F   +   
Sbjct: 434 RRVETLAEEYAKKGEPIPIEELIELYDSHGIQPDMVEEIAEEAGAEIDVPDDFYSLV--- 490

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
              A+ H         ++      E    T+ + YD  + ++F                 
Sbjct: 491 ---AQRHDTPEAVEAADEDEEDRFEDLPETEKLYYDDQQRTQF----------------- 530

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
               ++V  + ++ E           +VV DQT FY E GGQ  DTG    D    ++TD
Sbjct: 531 ---EAVVLDVFEREE---------GYDVVLDQTMFYPEGGGQPADTGTLSTDDTAAEVTD 578

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQ + +G+ +H A    G       +   ID   RRQL  +H+ATH++ HA   +LG H+
Sbjct: 579 VQIE-DGVILHRADENPG---KGEFVNGQIDGGRRRQLMRHHTATHIVIHAARQVLGEHI 634

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q G+    D  R DV H   I+ A++K IE   N+++  N  V     +R DA A    
Sbjct: 635 RQAGAQKGVDSSRIDVRHYDRISRADVKEIESLANELVMDNTQVSQDWPDRHDAEAEHGF 694

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G    +++R++ V            CGGTHV+ TG+I  + I++   ++ G+ RI
Sbjct: 695 DLYQGGIPPGEQIRLIQVA------DDIQACGGTHVARTGDIGSIKILNTERVQDGVERI 748

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
               G+ A      +++ L   A  L VS  +V    E  +EE++           QL  
Sbjct: 749 TFAAGEAAIESTQVKEDALYEAAEILDVSPEDVPETAERFFEEWKARGKEIEDLTEQLAA 808

Query: 784 EDLSCHKIADVNFM---SHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                    +   +   + ++   + D  EL++  +AL   ++ G I ++G  +   A  
Sbjct: 809 ARAGGGGGGEEVDVGDRTAVVDRIDADMDELRATANAL---VEEGKIAVLGSGQSG-AQF 864

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGPNGNKADQAIA 890
           ++ V +D     NA ++    A         GR        P  AQ GGPN    D A+ 
Sbjct: 865 VVAVPDD--SDVNAGEVVGELA---------GRVGGGGGGPPDFAQGGGPNVEDLDAALE 913

Query: 891 GVASFLKK 898
                L++
Sbjct: 914 DAPDVLRQ 921


>gi|322368072|ref|ZP_08042641.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552088|gb|EFW93733.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 923

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 219/958 (22%), Positives = 381/958 (39%), Gaps = 161/958 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++S +R  FL FF+++ HE +    +        ++ T + +  F+ + T G+  P    
Sbjct: 61  SLSEMREVFLSFFEEHDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGKTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F         + A+D        
Sbjct: 121 LTISQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNVREDAE-EEYAYD-------- 167

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
                   VY +DE      +    + AD +  IT  ++ W     G  GP  E+ +   
Sbjct: 168 ------GEVYWKDETVAYCDQLFESVGAD-LDEITYIEDPWVGG--GNAGPAIEVIY--- 215

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLER 232
                          +  E+  LVFM  EQ    E           +    +DTG GLER
Sbjct: 216 ---------------KGAELATLVFMSMEQDPDGEYEMKDGNRYSPMDTYIVDTGYGLER 260

Query: 233 MATVLQEKTNNYDI---DLF---------------KHLIQASEQVTG---------MKYE 265
              + Q     Y+    D+                + L+  + ++ G         M   
Sbjct: 261 WTWMSQGTPTVYEAVYPDMIAFLKENADINLSEEEEELVHRAAKLAGHMDIDEAEDMDAA 320

Query: 266 GNNIV------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
            +NI                       I DH R+ +++  DGI+P+N   GY+ R ++RR
Sbjct: 321 RDNIAEKVGVSTTELVELMEPLETIYAIADHSRALAYMFGDGIVPSNVATGYLARMVLRR 380

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                  +G   P +  L+      +G       + +  I + +R+E E++ +TL++G  
Sbjct: 381 TKRLCDTVGVDAP-LDELVDMQAERLGY------ENRDTIRDIVRTEVEKYRETLEQGGR 433

Query: 368 LLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            +  +   H  + + +  +   +LYD+HGL  D++++I    G +      F   + E+ 
Sbjct: 434 RVRRLAKRHAEEGKPIPTETLVELYDSHGLQPDMVEEIADEFGASVSVPDDFYSLVAERH 493

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
                   G  +   E+           T+ + Y+    + F                  
Sbjct: 494 D-------GGQAFEEEESEDDRFTDLPKTERLYYEDQYRTDF------------------ 528

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V  +  + E           +VV DQT FY E GGQ GD G    D   +++TD 
Sbjct: 529 --EAVVLDVFDREE---------GYDVVLDQTMFYPEGGGQPGDHGTLSTDEKTVKVTDT 577

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q   +G+ +HH       +     +   ID Q RR+L  +H+ATH++ HA   ILG H+ 
Sbjct: 578 QI-DDGVVLHH---TDDPVDKGSIVRGQIDAQRRRRLMRHHTATHIVVHAARQILGDHIR 633

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  R DV H + I     K IE   N+I+ +N  V     NR +A       
Sbjct: 634 QAGAQKGTDSSRIDVRHYERIDRETAKQIELLANEIVMENTTVQQEWPNRHEAEEEFGFD 693

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L          +  +   +        CGGTHV  TG++  + +++   ++ G+ R+   
Sbjct: 694 LYQGGIPAGTNIRLIHVAE----DVQACGGTHVRRTGDVGCIKLLNTERVQDGVERLTFA 749

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKL-QLNV 783
            G  A       ++ L + A  L VS   V    +  +EE++    Q+   K +L +   
Sbjct: 750 AGDAAIEATQETEDYLGAAADTLDVSPSEVPETADRFFEEWKARGKQIEDLKEQLAEARA 809

Query: 784 EDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
                 +  +V   + +I  +  D +EL++  +A+ +    G I ++G   +  A  ++ 
Sbjct: 810 SGAGGGEEIEVGDTTAVIQRIDTDMEELRATANAMAE---DGKIAVIGSGADG-AQFVVA 865

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-HMAQSGGPNGNKADQAIAGVASFLKK 898
           + +      NA  +    A  +GGGG  G P   AQ GGP+ +K D+A+      LK+
Sbjct: 866 IPDG--SSVNAGSVVGELASFVGGGG--GGPADFAQGGGPDADKLDEALESAPDVLKQ 919


>gi|313618845|gb|EFR90725.1| alanyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 533

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 181/562 (32%), Positives = 295/562 (52%), Gaps = 41/562 (7%)

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402
             I++ +R+E+ERF +TL+ GL +L+ +L +  +  ++ + G   FKLYDT G P+++ +
Sbjct: 2   DFIQKVIRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTE 61

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     GL  +D   F   ++EQR RAR+    + S   +     L      ++F+GY+ 
Sbjct: 62  EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGEL--LANLTDKSEFVGYNT 118

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
                                      S +  ++Q   +V+E  SG + +V+F +TPFYA
Sbjct: 119 TEH-----------------------VSEILYLIQDDTLVDEVASGSEAQVIFKETPFYA 155

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+GGQ+ D G    +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+
Sbjct: 156 ESGGQVADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRE 215

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
              NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ 
Sbjct: 216 TIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEX 275

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + + V+   M   +A   GA AL G KY + VRVV V     G +S  LCGG HV +T
Sbjct: 276 XWEQINVIIEEMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNT 330

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  A+ LK +      +VE+
Sbjct: 331 ADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQ 390

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQ 817
           +  + R+++  +     +L     +       +I  V  ++  ++  D  +L+  +D  +
Sbjct: 391 LQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWK 450

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
            K   G+++L  +  + K +++  V+ED +   ++A  L +  A    GG GGGRP MAQ
Sbjct: 451 DKKIGGVLVLGAVQGD-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQ 508

Query: 877 SGGPNGNKADQAIAGVASFLKK 898
           +GG N  +   A+  V++++K+
Sbjct: 509 AGGKNPAELGTALDYVSTWVKE 530


>gi|227538396|ref|ZP_03968445.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241743|gb|EEI91758.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 599

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/644 (31%), Positives = 341/644 (52%), Gaps = 59/644 (9%)

Query: 265 EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMM 323
           +    +  RV+ DH+R+ SF IADG LP+N   GYV+RRI+RRA+ YA   L +  P + 
Sbjct: 4   DEKTDIAMRVLSDHIRAVSFAIADGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFIN 63

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            L+P L  E    + ELIQ +  +++ +  E+  F +TL  G+   +        +  + 
Sbjct: 64  ELVPLLAKEFEGVFDELIQQQDFVQKVVLEEEVSFLRTLVTGVQRFETYAE---SNTAVG 120

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G+ AF+L+DT+G P+D+ + +   +G+  +D+  F +AL+ Q+ R+RA      +     
Sbjct: 121 GEFAFELFDTYGFPIDLTELLAREKGME-VDMAGFQEALQVQKDRSRAA-----TAIDTG 174

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
            W ++ E     +F+GYD L+ +  + + RKV  +                         
Sbjct: 175 DWVAVSEDDQI-EFVGYDNLKATTEIVKYRKVTAKGK----------------------- 210

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVE 561
                ++ ++V   TPFYAE GGQ+GD+G  + +  G ++ ITD +K+  G+ VH     
Sbjct: 211 -----EQYQLVLSVTPFYAEGGGQVGDSGVLLSESTGEKIYITDTKKE-NGLIVHF--TN 262

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              ++ E +    +D Q R     NHSATHLLH AL  +LG+HV+Q GS +  D LRFD+
Sbjct: 263 TLPVQMEGTFEAKVDVQKRLDTENNHSATHLLHAALKEVLGTHVNQKGSLVNADILRFDI 322

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVS 680
           +H   +T  ELK +ED VN  I +N+P+  +  +  + A+ SG  AL G KY D VRV++
Sbjct: 323 SHFAKVTEEELKQVEDIVNAKIRENIPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVIT 382

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
            + +     S  LCGGTHV +TG+I    I+SES++ AG+RRIEAITG +  + +    +
Sbjct: 383 FDDQ----FSKELCGGTHVKATGQIGFFKIISESAVAAGVRRIEAITGTKCAAVIREHFD 438

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVN 795
            +  L   L  +  + V  + ++ +E   L+    K  ++ ++      +    +I  VN
Sbjct: 439 LVHRLGELLH-NPKDFVSTLSKVIDENSALKKEIEKSIIEKSLALKSDLEQKIQQINGVN 497

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAV 853
           F++  +   +++ LK++  AL+  + + + +++G   E K ++ +VV++ L      NA 
Sbjct: 498 FLATQVELPNAEALKTLAYALKGAVDN-LFLVLGADFEGKPNLTVVVSDQLSKERGLNAG 556

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + R  AK + GG GGG+P  A +GG N      AIA   ++++
Sbjct: 557 TIVRELAKEINGG-GGGQPFFATAGGKNPEGLPAAIAKAKNYIQ 599


>gi|90019286|gb|ABD84294.1| alanyl-tRNA synthetase-like [Yersinia sp. MH-1]
          Length = 366

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 198/366 (54%), Positives = 259/366 (70%), Gaps = 11/366 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+LLT  K F+
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFN 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCS 173
           L + +L++TVY+ D+EA+ +W    G+  ++IIRI         DNFW M +TGPCGPCS
Sbjct: 123 LPKEKLWVTVYETDDEAYNIWANDVGVPRERIIRIGDKGAPFASDNFWQMGDTGPCGPCS 182

Query: 174 EIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q+      LPK S+DTGMGLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 242

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
           +A VLQ    NY+IDLF+ LI A  +VTG      N  + RVI DH+RS +FLI+DG++P
Sbjct: 243 IAAVLQHVNTNYEIDLFRDLIAAVAEVTGATDL--NSKSLRVIADHIRSCAFLISDGVIP 300

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NE RGYVLRRI+RRA+ +  +LG  +     L+  L   MGSA  EL Q + ++E+ L+
Sbjct: 301 SNENRGYVLRRIIRRAIRHGNILGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVLK 360

Query: 353 SEDERF 358
           +E+E+F
Sbjct: 361 TEEEQF 366


>gi|134046268|ref|YP_001097753.1| alanyl-tRNA synthetase [Methanococcus maripaludis C5]
 gi|189082111|sp|A4FZA5|SYA_METM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|132663893|gb|ABO35539.1| alanyl-tRNA synthetase [Methanococcus maripaludis C5]
          Length = 892

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/955 (22%), Positives = 399/955 (41%), Gaps = 181/955 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             + +   F  FF + GH  +  S ++     D  L+   S  V    + +G  KPV   
Sbjct: 60  TYNEMVKEFTNFFAEKGHSPVKRSPVVAKRWRDDILLTIASIAVFQPWVTSGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++  ++L+ 
Sbjct: 120 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVEYCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   +D++    TV                         T  +++W     G  GPC E+
Sbjct: 175 KRLGIDEK----TV-------------------------TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++    +   +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKVGN-DYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV----------------NHRV----- 274
             Q     Y+  LF  +I+  ++  G+      I+                + RV     
Sbjct: 245 ASQGTPTVYE-SLFSEVIEKLKKDAGIPEVDEKIMAESATLAGLMDIENVGDLRVLRQKV 303

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVDELDKLISPLEYIYAIADHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPEL + K  I + L SE++++ +T++RG  +++ 
Sbjct: 364 MEKIGISMSI-KDIIAMQLENMKEIYPELSEMKEYIMDVLDSEEKKYIQTVNRGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +         +  D   +LYD++G+P +I++D++                          
Sbjct: 423 M---AVSKSEITLDDLIELYDSNGIPPEIVKDVVDE------------------------ 455

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     + I  ++ + +       Y ++      ++  +V+  K  +       + 
Sbjct: 456 ----INKKGKKTIAITVPDNF-------YTIVAERHEEEKPEEVVSTKKELPELEVSETE 504

Query: 492 VKAIVQ--QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           +       Q E   + +   +  V+ D+T FYAE GGQ  D G   G    ++++DVQKK
Sbjct: 505 LLFFKHPTQVEFEAKVLKTVEKYVLLDKTLFYAEGGGQKYDIGQLNG----IEVSDVQKK 560

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             GI  H    +    +   ++  T++++NR +L  NH+ATH+++ A + +LG H+ Q G
Sbjct: 561 -NGIVFHKVS-DISKFKEGDTVKGTLNWENRLKLMRNHTATHVINAAATRVLGKHIWQTG 618

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           S +  +  R D+TH + I+  ++K IE   N+I+   +PV +  M+R D+       +  
Sbjct: 619 SNVDTEKGRLDITHYERISREQVKEIERIANEIVLSKMPVNSTFMDRNDSEQKYGFTIYQ 678

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G    D +R++ +E  D        CGGTH S+T E+  + ++    I+ G+ R+E  T
Sbjct: 679 GGVVPGDTLRIIEIEGTD-----VEACGGTHCSNTSEVGYIKVLKTERIQDGVERLEYST 733

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAKRKLQLNVED 785
           G  + S +   ++ L   A  L +    +   V+  +EE+++ +      ++K+   V+ 
Sbjct: 734 GMGSVSEIAVLEDILIDSAEILGIPNDQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKY 793

Query: 786 LSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
               K         ++ +V     EL S+ D L   I + +I+L+  +      +L    
Sbjct: 794 ELADKFEKHGDYEVLVEQVSGTPNELMSIADNLA--IGNKLIVLMNEND----YLLCKRG 847

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           E++    +  +L R        G GGG+ ++AQ  G      +Q    ++  L K
Sbjct: 848 ENV--ELSMKELIRNI------GKGGGKDNLAQ--GKYSETKEQITEKISQILNK 892


>gi|124486197|ref|YP_001030813.1| alanyl-tRNA synthetase [Methanocorpusculum labreanum Z]
 gi|189082110|sp|A2ST90|SYA_METLZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|124363738|gb|ABN07546.1| alanyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 913

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 224/969 (23%), Positives = 375/969 (38%), Gaps = 192/969 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +++ +R  +L FF+++GH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  SLTEMREAYLSFFERHGHTRINRYPVAARWRDDIYLTIASIADFQPFVTSGVCPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLDNVGR+ RH T FEM+ + +F       Y+K+R ++L    +  
Sbjct: 118 TISQPCIRL----NDLDNVGRSGRHFTCFEMMAHHAFNTDEKPIYWKDRCLELCSGFI-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                   L   V+D                      +T  +N W     G  GP  E+ 
Sbjct: 172 ------ESLGGNVFD----------------------LTYKENPWFGG--GNAGPSVEVL 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ---------ERFILPKMSIDTG 227
                                +E+  LVFM   ++N           + + +P   +DTG
Sbjct: 202 M------------------GGLEVATLVFMNLSRKNSGKPPVSIDGKDYYEMPLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------------------- 265
            GLER           YD  +F  +I       GM+                        
Sbjct: 244 YGLERFTWASCGTPTAYDA-VFPEMIPRILTAAGMEDRLENPEVERILGLNAKFAGLMDI 302

Query: 266 -GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGY 299
            G  I + R                          + DH R  ++++ D I+P+N   GY
Sbjct: 303 RGEKIRDLRQQVADATNISVAKLEEIIVPMETVYALCDHTRCLAYMLGDLIVPSNVREGY 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR++   + L   +  +  L+ +    +G A  E  Q + ++   +  E E++ 
Sbjct: 363 LARLVLRRSIRMMQDLNMDDD-LGDLVVSQMKTIGLANFE--QDEDIVRHIINREVEKYD 419

Query: 360 KTLDRGLVLLDGV-LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            T++RG   +  V  +++ K+E +       LYD+HG+P+D+M  IL   G        F
Sbjct: 420 TTIERGTRTVQRVGQTYVKKNEPVPLAELITLYDSHGIPVDLMGKILKDTGAEFEIPDDF 479

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
           +  + +  S             TEK    L +                  + E RK   +
Sbjct: 480 DSQIADMHS----------ENETEKPVSPLAK-----------YAERIAKIPETRKSFYE 518

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           +P         + V  I                 VV D T FY E GGQ  DTG  +   
Sbjct: 519 RPA---DMEFDATVLDIFDN-------------YVVLDATLFYPEGGGQPSDTGMLVTKS 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ +V K  E + +H   V    L+    +   +D   R  L  +HSATH++  A  
Sbjct: 563 TMVRVDEVVK-WENVILH--KVRENTLKRGDRVKGVLDEDRRWALMRHHSATHMVLRAAK 619

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG HV Q GS ++ D  R D+ H   IT  ELK +E   N ++ +NLP + +I NR  
Sbjct: 620 EVLGPHVHQAGSQLSTDVARLDIRHYTHITPEELKQMETIANRLVMENLPTMVKIENRVK 679

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A      AL   G      +RVV +  E         C GTH  STGEI  + I+    I
Sbjct: 680 AEQKFGFALYQGGVPPGKDIRVVQMGAE------VQACAGTHCQSTGEIGPIKILKLEHI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + G+ RIE   G  A   +      L + A  L V   N+ G V+  + E++  +    K
Sbjct: 734 QDGVERIEFAAGFAALDAMQHIQSLLNTSADTLSVQTENLPGSVDRFFTEWKDQRKEIEK 793

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEK 834
            + ++   +LS  +  ++  +  +I ++D   KEL +V   + ++   G+ +L+  +   
Sbjct: 794 LRAKIAELELSRIEGINIGGVEVVIKQIDVSRKELVTVAGKIAERG--GVTVLITTADG- 850

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVL------GGGGGGGRPHMAQSGGPNGNKADQA 888
               L VV      + +A  L       L               ++AQ  G + +   +A
Sbjct: 851 ----LGVVASSGTGKIHAGKLVGEVCAELGGKGGGKE-------NLAQGAGADPSAVGKA 899

Query: 889 IAGVASFLK 897
           +    SF++
Sbjct: 900 LLKAESFIR 908


>gi|154150810|ref|YP_001404428.1| alanyl-tRNA synthetase [Candidatus Methanoregula boonei 6A8]
 gi|189082109|sp|A7I7S4|SYA_METB6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|153999362|gb|ABS55785.1| alanyl-tRNA synthetase [Methanoregula boonei 6A8]
          Length = 914

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/975 (23%), Positives = 369/975 (37%), Gaps = 198/975 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V  +R  FL FF+KNGH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  TVDEMREAFLSFFEKNGHTRIERYPVAARWRDDIYLTIASIADFQPFVTAGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEML + +F       Y+K+R ++L    L  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTTFEMLAHHAFNTPTEEIYWKDRTVELCDQFLAS 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                             + ++T  ++ W     G  GP  E+ 
Sbjct: 174 IGG------------------------------DLNKVTYKEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDTG 227
                                +E+  LVFM   +Q         N ++ + +    +DTG
Sbjct: 202 I------------------GGLEVATLVFMSLGRQKTSHPGYDLNGEKYYPMKLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------------- 264
            GLER+    +     YD  +F  ++       G+ +                       
Sbjct: 244 YGLERLVWASKGSPTIYDA-VFPDMVSRVMSSAGISHLLENKDYTKILAMNARFAGLMDI 302

Query: 265 EGNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGY 299
            G+N+ N R                          IVDH R  ++++ D I+P+N   GY
Sbjct: 303 SGSNLFNLRKKVAAAIEISPEKLDRMITPIEKVYAIVDHTRCLAYMLGDCIVPSNVREGY 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR +         +  +  L+      +G    +  Q   ++ E +  E E++ 
Sbjct: 363 LARLVIRRTLRMMNEFKMQDT-LADLIEEQMKIIGM--DKFQQDIAVVREIVDREVEKYA 419

Query: 360 KTLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            TLDRG  ++  V      K + +       LYD+HG+P ++++DI    G       +F
Sbjct: 420 ITLDRGTRIVQKVAKSYKAKSQRVPLAEIITLYDSHGIPPEMIKDIAAKEGAVIDLPDNF 479

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +  S ++  +    +      +         T+ + Y+    ++F          
Sbjct: 480 YSQIADMHSESKKEAAPDKTAG----YAERVSALPPTKKLYYEQPGDTEF---------- 525

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                      ++V     +               V DQT FY E GGQ  DTG  +G  
Sbjct: 526 ----------EAVVIDFFDE-------------YAVLDQTLFYPEGGGQPADTGSLVGSD 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ DV K  E I  H   +  G+L+    +   ID + R  L  +H+ATH+L HA  
Sbjct: 563 SMARVDDVIKVGEVILHH---ISGGVLQRGERVKGMIDEERRFSLMRHHTATHILLHAAK 619

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG H+ Q+G+   P+  R D+ H K IT  EL+ IE   N ++  N PV   I NR  
Sbjct: 620 AVLGVHIHQSGAQKGPESSRIDIRHFKHITPDELRKIEIEANRMVMANRPVEISIENRTK 679

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A      AL   G      +R+V V            C GTH  STGEI  + I+    I
Sbjct: 680 AEQEYGFALYQGGVPPGKDLRIVKVAG------DIEACAGTHCRSTGEIGAIKILRVEHI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA- 775
           + GI RIE   G  A  ++   ++   S A  L V   N+   V   + E++  +     
Sbjct: 734 QDGIERIEFAAGTAAVYYMQHLEQIAASSADVLSVQLENLPPTVTRFFSEWKDQKKEIER 793

Query: 776 --KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
             +R ++L ++ +    I  +  +   I ++  +EL S+  +L +K     + L+    E
Sbjct: 794 MSQRLVELEIQAIQPESIGGIPVVVKRI-DLAPRELSSIATSLSEKGG---VALLATPGE 849

Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAK------VLGGGGGGGRPHMAQSGGPNGNKADQ 887
               VL         R NA D+                      P MAQ GGP  +K D 
Sbjct: 850 TARIVLASGD----ARVNAGDIIGQLCSLLGGKGGGK-------PQMAQGGGPEVDKLDL 898

Query: 888 AI----AGVASFLKK 898
           A+      + + L+K
Sbjct: 899 ALNVGRERIIAALQK 913


>gi|55379213|ref|YP_137063.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|59798483|sp|Q5UZE6|SYA_HALMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|55231938|gb|AAV47357.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 927

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/952 (21%), Positives = 378/952 (39%), Gaps = 180/952 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           +++ +R  FL FF+   HE +    +        ++ T + +  F+ + T G   P    
Sbjct: 60  SLTEMREAFLSFFEDRDHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGTTPPPANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK-ERAIQLAWDLLTKEFD 119
           +   Q C+R      D+DNVG+T RH   FEM+ + +F      E   Q A++       
Sbjct: 120 LCISQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNAREDIEDPEQYAYE------- 168

Query: 120 LDQRRLYITVYDEDEEAFKLWK--KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                    VY ++E      +  +  G + D+I+     ++ W     G  GP  E+ +
Sbjct: 169 -------GEVYWKNETVQYCDELFEEMGANLDEIV---YIEDPWVGG--GNAGPAIEVIY 216

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMG 229
                             R  E+  LVFM  EQ +  E           +    +DTG G
Sbjct: 217 ------------------RGAELATLVFMSMEQDSDGEYEMKDGNRYSPMDTYIVDTGYG 258

Query: 230 LERMATVLQEKTNNYD------------------IDLFKHLIQASEQVTG---------M 262
           LER   + Q     Y+                   D  + ++  + ++ G         +
Sbjct: 259 LERWTWMSQGTPTVYEAVYPDMIAFLKDNAGIELTDEEERIVHEAAKLAGRMDIDEAEDI 318

Query: 263 KYEGNNIV------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304
           + E + I                   +   I DH R+ ++++ DGI+P+N G GY+ R +
Sbjct: 319 EAERDTIAAEVGVEVEEMRDLMAPLEDIYAIADHCRTLAYMLGDGIVPSNVGTGYLARMV 378

Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           +RR       +G   P +  L+      +        + +  I + +R+E E++ +TLDR
Sbjct: 379 LRRTKRLVDGVGVDAP-LDELVDMQAERLDY------ENRDTIRDIVRTEVEKYRETLDR 431

Query: 365 GLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           G   +  +      K E +      +LYD+HG+  D++++I   +G+A      F   + 
Sbjct: 432 GGRRVRQLADEYAEKGEPIPTSELVELYDSHGIQPDMVEEIAAEKGVAVDVPDDFYAVVA 491

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           +     R       +  ++  +    E+   T  + Y+  + ++F               
Sbjct: 492 Q-----RHGGDDTATEESQTPYEDRLEELPETDRLYYEDQQRTEF--------------- 531

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                 ++V  +  + E           +VV DQT FY E GGQ  D G    D +  ++
Sbjct: 532 -----EAVVLEVFDRDE--------DTYDVVLDQTMFYPEGGGQPPDKGTLSTDDVSAEV 578

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           TDVQ +   + VH    + G       +   +D   R++L  +H+ATH++ H+   +LG 
Sbjct: 579 TDVQ-QYGDVIVHTCDDDPG---KGEFVRGQVDATRRQRLMQHHTATHIVIHSARQVLGE 634

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q G+    D  R D+ H + ++  ++K IE   NDII  N+ V     +R DA    
Sbjct: 635 HVRQAGAQKGTDSARIDIRHYESVSREKVKEIERLANDIIQDNITVSQEWPDRNDAEERY 694

Query: 664 AAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              L   G    +++R+++V            CGGTHV+ TG+I  + +++   I+ G+ 
Sbjct: 695 GFDLYQGGIPAGEQIRLITVG------DDVQACGGTHVARTGDIGAVKLLNTERIQDGVI 748

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+    G  A       ++ L   A  L V+   V    E  ++E++       + K QL
Sbjct: 749 RLTFAAGNAAIEATQRTEDALTEAADILDVAPDAVPETAERFFDEWKARGKEIEQLKEQL 808

Query: 782 N---VEDLSCHKIADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
                     ++   V   + ++   + D  EL++  +A+ ++   G I ++G   +  A
Sbjct: 809 AEARASGGGDNEEVGVGDATAVVGRIDADMDELRAQANAIVEQ---GNIAVLGSGLDG-A 864

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGGP 880
             ++ V + +    +A ++    A         GR        P  AQ GGP
Sbjct: 865 QFVVSVPDGV--DVDAGEVVGELA---------GRVGGGGGGPPDFAQGGGP 905


>gi|302348046|ref|YP_003815684.1| Alanyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
 gi|302328458|gb|ADL18653.1| Alanyl-tRNA synthetase [Acidilobus saccharovorans 345-15]
          Length = 913

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/923 (22%), Positives = 371/923 (40%), Gaps = 156/923 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V+  R  F++FF ++GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 58  TVAEARRKFIDFFARHGHTPIQPRPVVARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  ++ A++  T
Sbjct: 118 VISQPCIRL----EDIDNVGLTIGRHLTTFEMAAHHAFNYPDKQVYWKDETVRYAYEFFT 173

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE                           G+  D I+     +++W     G  GP  E+
Sbjct: 174 KEL--------------------------GIPGDLIV---FKESWWEGG--GNAGPSFEV 202

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++         LP   +DTG G+ERMA 
Sbjct: 203 TV------------------GGLELATLVFMQYKIDENGNYVELPLKIVDTGYGVERMAW 244

Query: 236 VLQEKTNNYDI-----------------------------------------DLFKHLIQ 254
             Q+    +                                           D F   + 
Sbjct: 245 FTQKTPTAFHAIYGQLLDKARSELGLPRPPEEYLWAAFRAAAKFNPDVEGSLDAFYQQVS 304

Query: 255 AS--EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
            +    ++ ++           ++DH ++ + ++ DG++P+N G GY+ R ++RRA+   
Sbjct: 305 KTTGAPLSEVRQVLEREARLYSVLDHSKTIAMMLGDGVVPSNSGEGYLARLVIRRALRQL 364

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLL      +  ++       GS +P+L + +  I E +  E++R+   L RG  L+   
Sbjct: 365 RLLNENYD-LAKIVDMQIDLWGSDFPQLKENRSYIIEAVGLEEDRYKDLLRRGEKLVLRE 423

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE-QRSRARA 431
           LS        + +   KLYD++G+P ++  +    +G+  +   +F   +    R+ A+ 
Sbjct: 424 LSQGA-----SLETLIKLYDSYGIPPEVAAEAAAKKGITVLVPRNFYSLVAARHRAPAKV 478

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S+   S   E +  S   ++  T+ + +       F                       
Sbjct: 479 RSIEEKSSLPEDV-VSWARQFKPTELLFHKDPYARSFTA--------------------- 516

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
            K +  +GE            VV D T FYA  GGQL D G     G R  + DVQK A 
Sbjct: 517 -KILGVKGE-----------YVVLDSTIFYATGGGQLNDVGVMEICGERYNVVDVQK-AG 563

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            + VH                  ID+  R +L  +H+ATH++  A   +LG+HV Q G+ 
Sbjct: 564 DVIVHKLDRAVDNASCG-EARGEIDWVRRFRLMRHHTATHIILGAARRVLGNHVWQAGAE 622

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            TP+  R D+TH KP+T  E++ IE+  N +I +  PV+   M+R +A +     L    
Sbjct: 623 KTPEKARLDITHHKPLTREEVRRIEELANRVIDERRPVLQAYMDRNEAESKYGFVLYEGG 682

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                ++  VE +   V     C GTHV++TG+I  + I++   I+ G+ R+E + G R 
Sbjct: 683 VPMERKIRVVEVQGWDV---EACFGTHVTNTGDIGGIKIINVEKIQDGVVRLEFVAGTRV 739

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSC 788
              +   ++++  L+S L    G  + +V+E+ +E  KL+     +    L      +  
Sbjct: 740 PEEMAALEDRMTQLSSELGSQGGEELNKVKELKDELMKLKESVKAYRSLWLSTAKGLIVS 799

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            K+  +   +    E D K  +  +  L  +  + +I +  + ++K     + +  +   
Sbjct: 800 SKVNGLIVATLEYPEPDVKSARDALKELTDEFINSVITVA-VKEDKGYRYELGIGREASR 858

Query: 849 RFNAVDLARLSA---KVLGGGGG 868
             +A  +    +   KV GGG G
Sbjct: 859 ILSAEAILAAISSELKVTGGGRG 881


>gi|219851912|ref|YP_002466344.1| alanyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
 gi|219546171|gb|ACL16621.1| alanyl-tRNA synthetase [Methanosphaerula palustris E1-9c]
          Length = 913

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/960 (20%), Positives = 366/960 (38%), Gaps = 176/960 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +  +R  +L FF+++GH  +    +       +  T + +  F+   T G   P    +
Sbjct: 58  TLDEMREAYLSFFERHGHTRIDRYPVAARWRDDIYLTIASIADFQPYVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+  ++L  + +  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTLFEMMAHHAFNSPKEEIYWKDHTVELCDEFV-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                 +   ++ +        T  ++ W     G  GP  E+ 
Sbjct: 172 --------------------HSIGGDLNAI--------TYKEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDTG 227
                                +EI  LVFM   +Q            + + +    +DTG
Sbjct: 202 I------------------GGLEIATLVFMSLGRQKTDHPPVELEGNQYYPMSTRVVDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRV------------- 274
            GLERM          YD  +F  ++       G+ +  +N  + ++             
Sbjct: 244 YGLERMVWASTGSPTIYDA-VFPDMVSTIMHSAGLDHHLDNPESTKMLALNAKFAGLMDI 302

Query: 275 -----------------------------------IVDHLRSSSFLIADGILPANEGRGY 299
                                              I DH R  ++++ D I+P+N   GY
Sbjct: 303 SGANLFQLRKKVAATIDVPIEKLQKMIVPIEQVYTIADHTRCLAYMLGDLIVPSNVREGY 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR +     L      +  L+     ++G++  E  Q   +I E +  E E++ 
Sbjct: 363 LARLVLRRTLRVMNDLKMDID-LGDLIEMQINKIGNSQFE--QNLDVIHEIVDREVEKYA 419

Query: 360 KTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
            T++RG  ++  V + +  K E +       LYD+HGLP ++++++    G       +F
Sbjct: 420 ATIERGTRIIQKVATTYKKKSEKVPLQEVVTLYDSHGLPPELIKEVASKEGAVVDLPDNF 479

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
              + +  S ++   +        + +         T  + Y+L    +F          
Sbjct: 480 YSLIADMHSESQKEQV----DDPLESYRERVSGLPDTHPLYYELPTEVEF---------- 525

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                       +V                    V+ DQT FY E GGQ  DTG  +   
Sbjct: 526 ----------EGMVLDFFD-------------GYVILDQTLFYPEGGGQPADTGTLVTAE 562

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             +++ D  K   G+ +H   +  G L+    +   +D   R  L  +H+ATH+L HA  
Sbjct: 563 SMVRVEDTIK-MGGVILH--KISGGSLKRGERVKGMVDEDRRWSLMRHHTATHILLHASK 619

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +LG+H+ Q+G+    +  R D+ H K IT  EL+ IE   N I+ +N P+  +I  R  
Sbjct: 620 EVLGAHIHQSGAQKGSESSRIDIRHFKHITPEELRRIEVKANQIVMKNRPISIKIEERTK 679

Query: 659 AIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           A       L   G      +R+V V+           C GTH  STGE+  + I+    I
Sbjct: 680 AEQKYGFGLYQGGVPPGKEIRIVKVDG------DIEACAGTHCKSTGEVGAIKILRVEHI 733

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           + GI RIE   G+ A + +   ++ L   A  L++   N+   V+  + E+++      +
Sbjct: 734 QDGIERIEFSAGRAAITAMQHVEQLLDESAQTLRIQPENLPSSVQRFFTEWKERGKEVER 793

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
            + +L   +L   +   V  ++ +I E+D      +    +K  ++  + L+  S +   
Sbjct: 794 LRARLVDLELQNVRYESVRGVNLVIKEIDVDP-SQLASLARKLSKNDGVALLASSTDTLH 852

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            VL   +       +A  +    A +L  G GGG   MA     + ++ + A+      +
Sbjct: 853 LVLSSGSRS----VDAGKILGQIA-LLIDGKGGGNATMAHGISEDRSQLEPALQAGKKLI 907


>gi|297620181|ref|YP_003708286.1| alanyl-tRNA synthetase [Methanococcus voltae A3]
 gi|297379158|gb|ADI37313.1| alanyl-tRNA synthetase [Methanococcus voltae A3]
          Length = 936

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 212/961 (22%), Positives = 400/961 (41%), Gaps = 160/961 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
             + +   + EF    GH  +  S ++       ++ T + +  F+   T G  KPV   
Sbjct: 60  TYNEMLKEYREFLHSEGHTPIKRSPVVAKRWRDDILLTIATIAVFQPWVTSGLVKPVENP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +T  Q C+R     ND+DNVGRT RH T F M  + +F       Y+ +R ++L +  +T
Sbjct: 120 LTIAQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNTEDDFKYWTDRTVELCYKFMT 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K                            G+    I   T  +++W     G  GPC E+
Sbjct: 176 K---------------------------IGIEGKSI---TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQF++        +P   +DTG G+ER   
Sbjct: 204 I------------------THGVELATLVFMQFKKVGD-TYEEIPLKIVDTGYGIERFVW 244

Query: 236 VLQEKTNNYDI----------------DLFKHLIQASEQVTGMKYEGNNIVNHRV----- 274
             Q  +N Y+                 ++ K ++  S ++ G+  +  N+ + RV     
Sbjct: 245 ASQGTSNTYEAIFSNIINILKKNAGIGEINKKILDESAKLAGLM-DIENVGDLRVLRQQV 303

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  +F++ DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKMNMDVNELDKVLSPLEYIYAITDHTRCLTFMLGDGIVPSNVKDGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G T  +   ++     E+   YPEL++ K  I + L SE+ ++ +T+++G  ++  
Sbjct: 364 MEKVGITMSI-NDIVDLQLEELKENYPELMKMKKYIHDVLESEERKYAQTVNKGRGIVQR 422

Query: 372 VLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID----IISFNQALEEQ 425
           ++    K  +  +  D    LYD+ GLP +++QDI+       I+    I      L   
Sbjct: 423 MVQSNKKSSVSEITLDDLINLYDSKGLPPELVQDIIFEINENEINNLKRIAERKGELVSD 482

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
            + A   S  +     +  +  + EK+             S    E+     + PP+++ 
Sbjct: 483 DAIAEIKSKQIKINVPDNFYTIVAEKHEE---------EKSDVQNENIDSKKELPPVNVN 533

Query: 486 NGVSSIVKAIVQQG----EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
                  + +  +     +   + ++  +  V+ D+T FYAE GGQ  D G        +
Sbjct: 534 GKSVEPTEFLFHRNSKQIDFKAKVLAVVEDHVILDKTLFYAEGGGQKYDIGTLSS----I 589

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            + DVQK+     V+H + +    +    +   I+++NR +L  NH+ATH+++ A + +L
Sbjct: 590 DVIDVQKQNN--VVYHKVSDVKSFKVGDMIYGKINWENRIKLMRNHTATHIINAAATQVL 647

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+H+ Q GS +  +  R D+TH + IT  E+K IE   NDI+ + +P+    + R +A  
Sbjct: 648 GNHIWQTGSNVDTEKGRLDITHFERITRDEIKEIEKVANDIVLRAIPITCEFLERNEAEQ 707

Query: 662 SGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
               ++   G    D +R++S+         +  CGGTH  +T E+  + I+    I+ G
Sbjct: 708 RYGFSIYQGGVVPGDTLRIISIP-----DIDTEACGGTHCENTLEVGYIKILKTERIQDG 762

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + R+E  +G  +   +   ++ +   AS   V    +    E  +EE+++ +      +L
Sbjct: 763 VERLEYSSGANSVGEVATIEDLVLDSASVFGVPAEQLPKTAERFFEEWKEQRKKIE--EL 820

Query: 780 QLNVEDLSCHKIAD----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           Q  V +L  +++ +    V     ++ ++D+  +K +M+     ++   I+++  +    
Sbjct: 821 QKRVGELVKYELNNSFVKVGKFDVLVEKIDAD-VKELMNTADNLVKDDSIVVLLNNNGNI 879

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
                          N   L R  A       GGG+ ++AQ  G    + ++    V  F
Sbjct: 880 LL-----KRGDNVEINMKTLIRQVA------KGGGKENLAQ--GKYTEEFEEIKNKVIEF 926

Query: 896 L 896
           +
Sbjct: 927 I 927


>gi|14601887|ref|NP_148431.1| alanyl-tRNA synthetase [Aeropyrum pernix K1]
 gi|6707749|sp|Q9Y9X3|SYA_AERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|5105865|dbj|BAA81177.1| alanyl-tRNA synthetase [Aeropyrum pernix K1]
          Length = 900

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 201/918 (21%), Positives = 360/918 (39%), Gaps = 153/918 (16%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            +V   R  FL FF+K+GH  +P   ++      L  T + +V F+   T G   P    
Sbjct: 44  MSVGEAREAFLSFFEKHGHTRVPPRPVVARWREDLYLTIASIVVFQPHVTSGLVPPPANP 103

Query: 61  VTTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
           +   Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE  ++LA++  
Sbjct: 104 LVISQPSIRL----EDIDNVGITIGRHLTSFEMAAHHAFNYPDRQVYWKEETVRLAFEFF 159

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+                            G+  + I+     +++W     G  GP  E
Sbjct: 160 TQVL--------------------------GIPPELIV---FKESWWEGG--GNAGPSFE 188

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                      +E+  LVFM++ +        +P   +DTG G+ER+A
Sbjct: 189 VAV------------------GGLELATLVFMKY-RVVDGRYEEIPLKIVDTGYGVERLA 229

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV--NHRV------------------ 274
              Q+    +   ++  L+    ++ G++    N++    RV                  
Sbjct: 230 WFTQKTPTAFHA-IYGSLVDDFRRMLGVEKPDENVMWAAFRVAGFLDPEDPESLRNYYQT 288

Query: 275 ------------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                                   ++DH ++ + ++ DGI+P+N G GY+ R ++RRA+ 
Sbjct: 289 VASLAGGDVETVRSILTREARLYSVLDHTKTIALMLGDGIVPSNSGEGYLARLVVRRALR 348

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
              LL    P ++ L+          +P+L +    I + +  E+ERF   L +   +++
Sbjct: 349 QLSLLNAEVP-LVDLVERQARFWMRDFPQLKENLDYILDAVSLEEERFRDVLRKARSIVE 407

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
                L + + L  D   +LYD+ G+P +I  +I  +RG       +F   +    +R R
Sbjct: 408 R---ELKRKKRLGVDDLIRLYDSMGVPPEIAAEIAASRGAPVEVPHNFYSLVA---ARHR 461

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                 G G  E               +  D+   ++   E R+V  + P          
Sbjct: 462 GPEKIRGYGFDETG-------------LPRDVEEWARRFGETRRVFHEDPYAKAWKARVL 508

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
            VK                   +V D T FY   GGQ+ DTG    +  + +I DVQK  
Sbjct: 509 GVKG----------------RYLVADSTIFYPTGGGQIHDTGVIRVNNQQYRIIDVQKVG 552

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + I   H             + + ID++ R  +  +H+ TH+L  A   +LG H  Q G+
Sbjct: 553 DAIV--HVAEREIAAEPGDEVWMEIDWERRYSIMRHHTVTHVLIAAARRVLGRHAWQAGA 610

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
             T +  R D+TH +P+T  +++ +E+ VN +I +   V   ++++ +A       +   
Sbjct: 611 EKTEEKGRLDITHHRPLTRDDIEKLENVVNQVIRERRRVWEDMVDKNEAEEKYGFTIYQG 670

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                 R+  V  ED  V     C GTHV +TGEI    I+S S I+ G+ R+E + G R
Sbjct: 671 GVPMEKRLRLVFVEDWDV---EACFGTHVRNTGEIGGFKIISYSRIQDGVVRLEYVAGDR 727

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-----KLQLNVED 785
              +    +E+L  +   +K  +G    RV+ +     + +    +      K       
Sbjct: 728 VAIYARELEERLARIGDAVKAPRGQEEARVKGLIASLEQAREDLKRYRDYWVKTIEEAYI 787

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               ++  V  ++    E D + ++ ++  L  + +  I  LV +  E    V I     
Sbjct: 788 SRARRVNGVKVLAVESLEKDRRTVQEILRKLTSRHEDLIAALV-VENEGNTQVEIAAGPK 846

Query: 846 LLDRFNAVDLARLSAKVL 863
             ++ +   L ++  K +
Sbjct: 847 AAEKVDLGALVKIVIKKV 864


>gi|254574772|pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain
 gi|254574773|pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
           Oligomerization Domain
 gi|254574774|pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
           With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
           Oligomerization Domain
          Length = 752

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 180/796 (22%), Positives = 323/796 (40%), Gaps = 170/796 (21%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL FF+K+    H  +    ++P     ++   + ++ F+     G+  P  
Sbjct: 58  TLDEMREKFLRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +    +                             T  +N W+    G  GP  
Sbjct: 174 FTKELKMKPEDI-----------------------------TFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  R +E+  LVFMQ+++               ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------- 271
             +DTG GLER+  + Q     YD  +  ++++  +++ G++     I+           
Sbjct: 245 KVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILMENSRLAGMFD 303

Query: 272 ----------------------------------HRVIVDHLRSSSFLIADGILPANEGR 297
                                                I DH ++ +F++ADG++P+N   
Sbjct: 304 IEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKA 363

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ R ++R+++ + R LG   P +  ++     E+   +PE  + + +I E +  E+++
Sbjct: 364 GYLARLLIRKSIRHLRELGLEVP-LSEIVALHIKELHKTFPEFKEMEDIILEMIELEEKK 422

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + +TL RG  L+   ++ L K  I  +  +     Y++HGL  +I+++I    G+     
Sbjct: 423 YAETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIP 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F   + ++  R +           E + F L +    T+ + Y+              
Sbjct: 483 DNFYSMVAKEAERTKE------EKGEELVDFELLKDLPDTRRLYYEDP------------ 524

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V  +++               V+ D T FY E GGQ  DTG  I
Sbjct: 525 --------FMKEFDAKVLRVIKD-------------WVILDATAFYPEGGGQPYDTGVLI 563

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G  +++T+VQK   G  + H + + G  +  M +   ID++ R Q   +H+ TH+L  
Sbjct: 564 VNGREVKVTNVQKV--GKVIIHKVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMG 621

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +T D  R D++H K I+  ELK IE   N I+ ++  V    + 
Sbjct: 622 ALVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWEWLP 681

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R  A       L   G      +RVV +E           CGGTH+ STG +  + I+  
Sbjct: 682 RTTAEQKYGFRLYQGGVVPGREIRVVKIE-----DWDVQACGGTHLPSTGLVGPIKILRT 736

Query: 714 SSIRAGIRRIEAITGQ 729
             I+ G+ RI    G+
Sbjct: 737 ERIQDGVERIIFACGE 752


>gi|222479154|ref|YP_002565391.1| alanyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|254765170|sp|B9LUG4|SYA_HALLT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|222452056|gb|ACM56321.1| alanyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 926

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 222/949 (23%), Positives = 365/949 (38%), Gaps = 178/949 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           ++S +R  FL FF+++GHE +    +        ++ T + +  F+ + T GQ  P    
Sbjct: 61  SLSEMREAFLSFFEEHGHERIDPYPVAANRWRDDVLLTQASIYDFQPLVTSGQTPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T  Q C+R      D+DNVG+T RH   FEM+ + +F                 +E   
Sbjct: 121 LTISQPCIRMQ----DIDNVGKTGRHTMAFEMMAHHAFNTR--------------EEVAE 162

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+   +  VY +DE      K    L AD +  IT  ++ W     G  GP  E+ +   
Sbjct: 163 DEYAYHGEVYWKDETVEYCDKLFESLGAD-LEDITYIEDPWVGG--GNAGPAIEVIY--- 216

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--------LPKMSIDTGMGLER 232
                          +  E+  LVFM  E+    +  +        +    +DTG GLER
Sbjct: 217 ---------------KGAELATLVFMCMERDPDGDYEMKDGHTYSFMDTYIVDTGYGLER 261

Query: 233 MATVLQEKTNNYD------IDLFKH------------LIQASEQVTGMKYEGNNI----- 269
              + Q     Y+      ID  K             L+  + +++G     +       
Sbjct: 262 WTWMSQGTATVYEAVYPDAIDFLKENAGIEHTEAEQKLVHRAAKLSGRLDIDDVDDVEAA 321

Query: 270 ----------------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                  +   I DH R+ +++  DGI+P+N G GY+ R ++RR
Sbjct: 322 RGEIADRLDVDVNRLRELVEPLESIYAIADHSRTLAYMFGDGIVPSNVGTGYLARMVLRR 381

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                  +G   P +  L+      +G       + +  I E +R+E+ ++ KTL+RG  
Sbjct: 382 TKRLVDEIGIDAP-LDELVDMQAERLGY------ENRDTIREIVRTEERKYRKTLERGSR 434

Query: 368 LLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++ +     G DE +  +V  +LYD+HG+  D++ DI   RG        F   + ++ 
Sbjct: 435 KVESLADEYAGTDEPIPTEVLLELYDSHGIQPDMVADIAAERGATVDVPDDFYALVADRH 494

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
             A                    +    T+ + YD    ++F                  
Sbjct: 495 EEADGDEAAAERD-------DRFDDLPETEKLFYDDQGRTEF------------------ 529

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V         V E   G   +VV DQT FY E GGQ  D G        + + DV
Sbjct: 530 --EAVVLD-------VFELEEG--YDVVLDQTMFYPEGGGQPADRGQLTAGETTVDVVDV 578

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q++  G+ +H    + G       +   +D   R +L  +H+ATHL+ HA   +LG+HV 
Sbjct: 579 QER-NGVVLHRTDADPG---KGEFVRGQVDGDRRDRLRAHHTATHLIGHAAREVLGNHVR 634

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  R D+ H + IT  ++K IE   N ++  ++PV     +R +A +     
Sbjct: 635 QAGAQKGIDSSRLDIRHFERITREQVKEIERVANALVRDDVPVRQEWPDRNEAESEHGFD 694

Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L   G      +R++ V  ED        C GTHV  TGEI  + ++    ++ G+ RI 
Sbjct: 695 LYQGGVPPGTNIRLIHVGDED-----VQACAGTHVERTGEIGAVKVLKTEPVQDGVERIV 749

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV- 783
              G  A       ++ L   A  L V   +V    E  +EE++         K +L   
Sbjct: 750 FAAGGAAVEATQRTEDALYDAARALDVDPLDVPETAERFFEEWKGRGKEIESLKEELAAA 809

Query: 784 -----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                 D    +I  V  +   +   D+ EL++  +A    +  G + +VG   +  AS 
Sbjct: 810 RASGGADAEEVEIGGVTAVIQRLDG-DADELRATANA---HVDDGKVAVVGSGADGSASF 865

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR--------PHMAQSGG 879
             VV        NA  +    A          R        P  AQ GG
Sbjct: 866 --VVGVPDGVDVNAGQVVSELAA---------RVGGGGGGPPDFAQGGG 903


>gi|257052998|ref|YP_003130831.1| alanyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
 gi|256691761|gb|ACV12098.1| alanyl-tRNA synthetase [Halorhabdus utahensis DSM 12940]
          Length = 926

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 218/941 (23%), Positives = 374/941 (39%), Gaps = 167/941 (17%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +  +R  FL FF+++ HE +    +        ++ T + +  F+   T G   P    +
Sbjct: 62  LGEMREQFLSFFEEHDHERIDPYPVAANRWREDVLLTQASIYDFQPHVTSGASPPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q C+R      D+DNVG T RH   FEM+G+ +F     +     A++         
Sbjct: 122 AVSQPCIRMQ----DIDNVGVTGRHTMAFEMMGHHAFNA---DEGTDYAYE--------- 165

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
                  VY +DE        ++ + AD+   +T  ++ W     G  GP  E+ +    
Sbjct: 166 -----GEVYWKDECVEYCMDLLAEVGADR-EAVTLIEDPWVGG--GNAGPAFEVIY---- 213

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ--------ERFILPKMSIDTGMGLERM 233
                            E+  LVFMQFE+                + +  IDTG GLER 
Sbjct: 214 --------------EGAELATLVFMQFERDPDGDFEMKDGNTYSRMDRRVIDTGYGLERW 259

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------------------------- 268
             + Q     Y+  ++  +I       G+ +  +                          
Sbjct: 260 TWMSQGTPTVYEA-VYPDMIDFLTDNAGIDHTADEEEIVHKAAKLSGRMDIDEAEDVEAA 318

Query: 269 ---------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                + +   I DH R+ ++++ DGI+P+N G GY+ R ++RR
Sbjct: 319 RDDIAAEIGVATDRLRELVEPLESIYAIADHSRTLAYMLGDGIVPSNVGTGYLARMVLRR 378

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLV 367
                  +G   P +  L+      +G         +  I + +R+E E++ +TLDRG  
Sbjct: 379 TKRLVDEVGVDAP-LDELVDMQAERLGY------DNRDTIRDIVRTEVEKYRETLDRGHR 431

Query: 368 LLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            ++ +        + +  D   +LYD+HG+  + ++ I   RG+A      F   + E+ 
Sbjct: 432 RVEQLAEEYADSGDPIPADELVELYDSHGMQPETVEQIAADRGVAVETPEDFYSLVAERH 491

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
             A        S T E++          T+ + YD    ++F                  
Sbjct: 492 EDAERAGSTEESDTDERL-----ADLPETEKLYYDDQTRTEF------------------ 528

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              ++V  + ++             +VV DQT FY E GGQ  D G    D   +++TDV
Sbjct: 529 --EAVVLDVFERA---------DGYDVVLDQTMFYPEGGGQPPDQGTLSTDDETVEVTDV 577

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q + +G+ +H    + G   T   +   +D + RR+L  +H+ATH++ HA   +LG H+ 
Sbjct: 578 QIQ-DGVILHRTDADPG---TGDFVRGQVDGRRRRRLMAHHTATHIVVHAARQVLGDHIR 633

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D  R DV H +P++ A +K IE   NDI+  N  V     +R +A A     
Sbjct: 634 QAGAQKGTDSARIDVRHYEPVSRAAVKEIERVANDIVTDNAQVTQEWPDRHEAEAEYGFD 693

Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L   G    +++R++ VE           CGGTHVS TGE+  + I S   I+ G+ R+ 
Sbjct: 694 LYQGGIPAGEQIRLIHVE------DDVQACGGTHVSRTGEVGAIKIRSTERIQDGVVRLT 747

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-- 782
              G+ A       ++ L   A    V   +V    E  + E+++        + +L   
Sbjct: 748 FAAGEAAIEATQATEDALYEAAEAFDVDPQDVPETAERFFAEWKERGKEIEALRAELAEV 807

Query: 783 -VEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
                S  +  D++  + ++  VD    EL++  +A+     SG + +VG + +    V+
Sbjct: 808 RASGASEGEEVDLDGTTAVVQRVDGEMDELRATANAIAD---SGSVAVVGSAADGAQFVV 864

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP-HMAQSGG 879
                      +A  +    A  +GGGG  G P   AQ GG
Sbjct: 865 AA---PEGSGVDAGSVVSELADRVGGGG--GGPSDFAQGGG 900


>gi|150400126|ref|YP_001323893.1| alanyl-tRNA synthetase [Methanococcus vannielii SB]
 gi|189082114|sp|A6US09|SYA_METVS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|150012829|gb|ABR55281.1| alanyl-tRNA synthetase [Methanococcus vannielii SB]
          Length = 892

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 213/953 (22%), Positives = 384/953 (40%), Gaps = 177/953 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             + +   F  FF + GH  +  S +I     D  L+   S  V    +  G  KPV   
Sbjct: 60  TYNEMVKEFTNFFDERGHSPVKRSPVIAKRWRDDILLTIASIAVFQPWVTNGLVKPVKNP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M  + +F       Y+ ++ ++L ++L+ 
Sbjct: 120 LVITQPCIRL----NDIDNVGRTGRHLTCFTMGAHHAFNSKDEYKYWTDKTVELCFELM- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     +  G+    I   T  +++W     G  GPC E+
Sbjct: 175 --------------------------QKLGIDGHTI---TFIESWWEGG--GNAGPCYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+++        +P   +DTG G+ER A 
Sbjct: 204 I------------------THGVELATLVFMQYKKVGN-NYEEIPLKIVDTGYGIERFAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN------------------------ 271
             Q     Y+  LF  +I+  ++   +      I+                         
Sbjct: 245 ASQGTPTVYEA-LFSDIIEKLKKNANIPIVDEKIMAESATLAGLMDIENVGDLKALRQKV 303

Query: 272 --------------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I DH R  SF+  DGI+P+N   GY+ R ++R+ + Y
Sbjct: 304 AEKIGMDVNELDRLISPLEYIYAISDHTRCLSFMFGDGIVPSNVKEGYLARLVLRKTLRY 363

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              +G +  +   ++      M   YPELI  K  I + L SE++++ +T+++G  +++ 
Sbjct: 364 MEKVGISYSI-KEIILMQLESMKEVYPELIGMKDYIMDVLDSEEKKYIQTVNKGRGIVER 422

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + + L  +  +  +    LYD++GLP +I++DI+                        + 
Sbjct: 423 M-TKLKSE--ITLNDLINLYDSNGLPPEIVKDIIDEIN--------------------KT 459

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
               +     +  +  + E++   +     +L+      +  K         + +   + 
Sbjct: 460 SKTKISIHVPDNFYTIVAERHEEEKAEEVAILKHELPELDLPKTELLFFKNTMQSEFEAK 519

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  IV +              ++ D+T FYAE GGQ  D G   G    + + DVQKK  
Sbjct: 520 VLKIVDK-------------YIILDRTVFYAEGGGQKYDIGQISG----VDVVDVQKKNG 562

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V H +++    +    +   ++++NR +L  NH+ATH+++ AL  +LG HV Q GS 
Sbjct: 563 --IVFHKVLDISKFKEGNLVKGELNFENRLKLMRNHTATHVINAALKQVLGKHVWQTGSN 620

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  +  R DVTH + I+  E+K IE   N+I+    PV  + M+R DA       +   G
Sbjct: 621 VDTEKGRLDVTHYERISRKEIKEIEKIANEIVLLGKPVTCKFMDRNDAEQEYGFKIYQGG 680

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               D +R+V ++  D        CGGTHV++T EI  + ++    I+ G+ R+E  TG 
Sbjct: 681 VVPGDTLRIVEIDGID-----VEACGGTHVTNTSEIGYIKVLKTERIQDGVERLEYSTGM 735

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAKRKLQLNVEDLS 787
            +   +   ++ L   A  L V   N+    +  +EE+++ +      ++K+   ++   
Sbjct: 736 GSIFEIAALEDILLDSAEVLGVPIENLPKTAKRFFEEWKEQKKVIEELQKKVGELLKYEL 795

Query: 788 CHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             K   V  +  ++ +V     EL ++ D L     +G I+++    +      I+  + 
Sbjct: 796 LEKFEKVGNLEILVEKVSGTSNELMAIADNLAT---NGKIVILMNDTD-----YILCKKG 847

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                +  +L +        G GGG+ ++AQ  G      +Q        LK+
Sbjct: 848 ENVEISMKELIQKI------GKGGGKENLAQ--GKYSTSKEQIREKAFELLKQ 892


>gi|296109504|ref|YP_003616453.1| alanyl-tRNA synthetase [Methanocaldococcus infernus ME]
 gi|295434318|gb|ADG13489.1| alanyl-tRNA synthetase [Methanocaldococcus infernus ME]
          Length = 873

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/954 (23%), Positives = 401/954 (42%), Gaps = 199/954 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP--CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           +   +   F+ FF+K+GHE +  + ++     D  L+   S  V    +  G  KP    
Sbjct: 54  SYKEMVEEFINFFKKHGHEPIKRAPVVAKRWRDDILLTIASIAVFQPWVTKGLVKPKANP 113

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-----GYFKERAIQLAWDLLT 115
           +   Q C+R     ND+DNVGRT RH T F M G+ +F       Y+ +  ++L ++   
Sbjct: 114 LVIAQPCIRL----NDIDNVGRTGRHLTCFTMGGHHAFNSEEEFKYWIDETVELCFNFF- 168

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   +D++ +                             T  +++W     G  GPC E+
Sbjct: 169 KNLGIDEKSI-----------------------------TFIESWWEGG--GNAGPCFEV 197

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E+    E   +P   +DTG G+ER   
Sbjct: 198 L------------------THGVELATLVFMQYEKVGN-EYKEIPLKIVDTGYGIERFVW 238

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------- 270
           V   +   YD  LFK +I+  ++  G++     I+                         
Sbjct: 239 VSTGEPTIYDA-LFKDIIEKLKKEAGIEEIDKEILAKITELSGLMDVKDVGDLRKLREVV 297

Query: 271 -------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                              N   +VDH R+ +FL+ DG++P+N   GY+LR ++R+++ +
Sbjct: 298 AKRVGLDVEELERILEPYENLYALVDHTRAITFLLGDGVVPSNVKEGYLLRMLIRKSLRH 357

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
              L     L   ++     E+ + YPEL+  K  +E+ L  E ER+ +TL RG  ++  
Sbjct: 358 LNKLNLNLSLF-DVVELHLKELKALYPELLDMKDYMEKVLALETERYKETLKRGEGIIKR 416

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L      ++   +   +LYD+HG+P+D++++I            +F   + E+    R 
Sbjct: 417 LLKKKKSLDL---EDIIELYDSHGIPVDLIEEIA-----KVKVPDNFYTIVAERHENVRE 468

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     E++   +      T+ + Y+ L+  K                      + 
Sbjct: 469 GEKK------EELSLDI-----ETKPLYYENLKEFK----------------------AK 495

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  I+                V+ D+T FY E GGQ  DTG  I D  + ++ DVQK  +
Sbjct: 496 VVKIIDN-------------FVILDRTAFYPEGGGQKADTGYLIKDNKKYRVLDVQKFGK 542

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I      VE   LR    +   ID+  R  L  +H+ATH++  A   +LG HV+Q GS 
Sbjct: 543 AIAHKLESVEG--LREGDEVKGVIDWDRRESLMRHHTATHIIGSACRKVLGKHVNQAGSD 600

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
           +  D  R D+TH K ++  E+K IE   N+I+ +N  +  + M+R +A      ++   G
Sbjct: 601 VDIDKARLDITHYKRLSREEIKEIERIANEIVVRNYNIEAKFMDRNEAEEKYGFSIYQGG 660

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               DR+R+V +            CGGTH S TG++ L+ I+    ++ G+ R+    G 
Sbjct: 661 VVPGDRIRIVKI-----DDIDVQACGGTHCSKTGDVGLIKILKTERVQDGVERLIYSAGL 715

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDL 786
           +A   +   ++ L S++  LK    NVV  +++   E+++L+       K+  +L   +L
Sbjct: 716 KALEKVQELEDNLLSVSETLKCQPENVVKVLDKFVNEWKELRKRVEELEKKVGELKKYEL 775

Query: 787 --SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                K+ DV  +   +   + KEL ++ D L   + + +++L   +         V+ +
Sbjct: 776 INKFEKVGDVELLVEKVEG-NPKELLNLADHLA--LGNRLVILTNGN--------FVICK 824

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               + +  +L  L       G GGGR  +AQ       K+D+++  +   +K+
Sbjct: 825 RGEVKLDVRELINLF------GRGGGREDLAQG------KSDKSVEEIKKIVKE 866


>gi|171185364|ref|YP_001794283.1| alanyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
 gi|205830275|sp|B1YDH4|SYA_THENV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170934576|gb|ACB39837.1| alanyl-tRNA synthetase [Thermoproteus neutrophilus V24Sta]
          Length = 892

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 216/945 (22%), Positives = 357/945 (37%), Gaps = 161/945 (17%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + +++ +R  FL FF++N H  +    ++      +    + +  F+   T G   P   
Sbjct: 54  VESLADLRERFLRFFERNSHVRIRRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   Q A++  
Sbjct: 114 PLAISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETTQYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+E                           G+  D+I   T  ++ W     G  G C E
Sbjct: 170 TREL--------------------------GIPPDEI---TFKESMWEGG--GNAGECFE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                    R +E+  LVFM +E +       LP   +DTG GLER+ 
Sbjct: 199 VLI------------------RGLEVATLVFMHYEVK-DGRYVELPLKIVDTGYGLERIY 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASE------------------------QVTGMKYEGNNIV 270
            +L+     YD     +L +A +                        +V G++   + I 
Sbjct: 240 WLLKGTPTVYDAVFGPYLAKARQRLGVPEPPAEVMGKASVYFGQMDPEVIGLEKAYDIIA 299

Query: 271 ------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                V+ DH R+ S++IADG++P+N G GY+ R ++RR +   
Sbjct: 300 EKIGVDPKWLREVVRPQEALYVLADHSRTVSWMIADGVIPSNTGAGYLARLLIRRILKNL 359

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RL G   P ++ L      E+   YPE+ +A+ LI E +  E+ R+ + L      +   
Sbjct: 360 RLAGVDAP-LVELFDMHLAELKREYPEVWEARGLILELVDMEERRYREVLKSAPAAVKKA 418

Query: 373 LSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
           L    +     L+ D    LYD+ G+P ++  ++  + G        F   L  +  + R
Sbjct: 419 LEEARRRGRAGLDADDLVALYDSQGIPPEVAAEVAKSLGTEVKVPDDFYAKLAARHVK-R 477

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                       K+                DL R  +   ED  +   K           
Sbjct: 478 EKKPESSPVEMGKVA---------------DLPRTRELFYEDSYMRSFK----------- 511

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
                      V   + G+   VV DQT FY E GGQ  D G     G   ++ DVQ+  
Sbjct: 512 ---------ARVLRVIDGR--YVVLDQTAFYPEGGGQPADRGVLKFQGGEAKVVDVQRVG 560

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             +     +VE         +V  +D++ R  L   H+ TH+L  ++  +LGSH+ Q G+
Sbjct: 561 HVVVH---VVEGQPPPEGAEVVGEVDWERRYSLMKMHTGTHVLIQSIRRVLGSHIWQAGA 617

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-G 669
                  R DVTH +  T+ E+  IE+  N  +  +LPV  +IM R +A A     L  G
Sbjct: 618 QKDIPSSRIDVTHHRLPTAEEVARIEELANRAVQADLPVYAKIMPRNEAEAKYGFVLYQG 677

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                R   V     D   +    CGGTH+ STGEI L+ I     I  G+ R    TG 
Sbjct: 678 GVVPAREIRVLQIGPDEQPYDVQACGGTHLRSTGEIGLIKIQKVERIADGVVRFVFTTGM 737

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A +++   + +    AS    S+  +V  V  + +   +      +             
Sbjct: 738 HALAYVQELERRAAEAASIAGGSRDELVEAVRRLAQRAEEADRRARRYAELYAAALAENL 797

Query: 790 KIADVNFMSHIISEVDSKEL-KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
           K   V      + E+D +EL + +  A   + +  +++ VG     +A+V          
Sbjct: 798 KAEQVGRHRLAVVELDDEELARKIALAATSRDRDLVLVFVG---GGRATVY-------TG 847

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP-NGNKADQAIAGV 892
             +   + +   +V  G  GGG    AQ     +     +AI   
Sbjct: 848 GVDVAPIVKALREV--GFRGGGSKTFAQGQYKGDIQTLKEAIRRA 890


>gi|330834452|ref|YP_004409180.1| alanyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
 gi|329566591|gb|AEB94696.1| alanyl-tRNA synthetase [Metallosphaera cuprina Ar-4]
          Length = 903

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/906 (22%), Positives = 378/906 (41%), Gaps = 152/906 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S  R  FL+FF++NGHE++    ++      L  T + +V F+   T G   P    +
Sbjct: 61  SMSEARRKFLDFFRRNGHEVIQPKPVLARWREDLYLTIASIVDFQPYITSGVSPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R     +D+DNVG T  RH T FEM G+ +F       Y+K+  +  A +  T
Sbjct: 121 VISQPCIRM----DDVDNVGITFGRHLTTFEMGGHHAFNYPDKFIYWKDETVAYAKEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E  + +  L                                +++W     G  GP  E+
Sbjct: 177 EEMKIPEELL-----------------------------NFKESWWEGG--GNAGPSFEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E +   +   L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYEIKGD-QYVPLKLKIVDTGYGIERLAW 246

Query: 236 VLQEKTNNY-----------------------------------DIDLFKHLIQASEQVT 260
             Q+   ++                                   D DL   + +   QV 
Sbjct: 247 FTQKTPTSFHAIYGELVDKFVGKLNMPRLDNGILKVASRYAGRIDPDLPSTVEEHRRQVA 306

Query: 261 ---GMKYEGNNIVNHRV-----IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
              G+  +  +    R      ++DH ++ S ++ DG++P++ G GY+ R ++RRA+   
Sbjct: 307 QTLGLPVKEVSDELTRAARVFQVLDHTKTISLMLGDGLVPSSGGEGYLGRLLIRRALRTL 366

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           +LLG     +  L+       G  + +L + +  I + +  E E+F + L +   + +  
Sbjct: 367 KLLGIDV-RLSELVEMQIEFWGKDFTQLYRNRDYIIDAVNLEQEKFREVLTKMTAVANSF 425

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
                  + +  +   +LYD+HG+P D++ D L ++GL      +F   + ++   A   
Sbjct: 426 AQR----KDVGVEDLIRLYDSHGIPPDLIADELRSKGLKVEIPHNFYSIVAKRHQSAPVK 481

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                +    ++   +K+    T+ + Y      KF                        
Sbjct: 482 KEWETTKLPLEVVNQVKD-LEPTEKVYYQDQYARKF------------------------ 516

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                +G++++         +V ++T FY E GGQLGD G       R+++ D QK  E 
Sbjct: 517 -----EGKVIKSIGK----YLVLNRTVFYPEGGGQLGDQGWITIGNERIKVVDTQKVNE- 566

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             V H +     L+   ++   ID+  R ++  +H+ATH++  A   +LG HV Q G+  
Sbjct: 567 -VVVHVMEREVDLKGNETVQGEIDWVRRFRMMRHHTATHVILAAAKKLLGDHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           TP+  R D+TH K ++  ++  +E   N +I    PV    +NR +A      ++     
Sbjct: 626 TPEKARLDITHHKNLSEEDIIKLEHMANQVIDDRRPVTPFEINRTEAELKFGVSIYEGGV 685

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            ++  +  ++ +D  V S   CGGTHVS+T +I  + I++   I+ GI R+E + G    
Sbjct: 686 PNKPTLRLLDIKDWDVES---CGGTHVSNTADIGGVKIINVEKIQDGIIRLEYVAGDVVS 742

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            +    ++K+ SLAS L+ S   +  R+ ++ EE  +++ + A  + Q         ++ 
Sbjct: 743 LYARQLEDKISSLASKLETSPSQLEFRLNKLIEENEEMKELVASYRRQFLEGVERVVELR 802

Query: 793 DVNFM--SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            +N +  + + + VD++  K  +  L  K +  ++ +       K  V I  + DL   F
Sbjct: 803 RINEITLALLPTMVDTELEKEAIRRLTSKEK--VVAIHVSQTNGKLKVDIGTSRDLNVSF 860

Query: 851 NAVDLA 856
              +L 
Sbjct: 861 IVNNLV 866


>gi|213420683|ref|ZP_03353749.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 340

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/338 (56%), Positives = 244/338 (72%), Gaps = 12/338 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172
           L + RL++TVY+ D+EA+++W+K  G+  ++IIRI  N       DNFW M +TGPCGPC
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPC 182

Query: 173 SEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231
           +EIF+D G+ I GG PGS  E+G+RYIEIWN+VFMQF +Q       LPK S+DTGMGLE
Sbjct: 183 TEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLE 242

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+A VLQ   +NYDIDLF+ LI+A  +VTG    GN   + RVI DH+RS +FL+ADG+L
Sbjct: 243 RIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNK--SLRVIADHIRSCAFLVADGVL 300

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329
           P+NE RGYVLRRI+RRA+ +  +LG  E     L+  L
Sbjct: 301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPL 338


>gi|18314158|ref|NP_560825.1| alanyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
 gi|22096201|sp|Q8ZSV6|SYA_PYRAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|18161747|gb|AAL65007.1| alanyl-tRNA synthetase [Pyrobaculum aerophilum str. IM2]
          Length = 892

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 209/930 (22%), Positives = 358/930 (38%), Gaps = 162/930 (17%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           + +++ +R  FL FF++ GH  +    ++      +    + +  F+   T G   P   
Sbjct: 54  IDSLTELRERFLRFFERRGHARIKRYPVVARWRDDVYLVGASIYDFQPWVTSGAVPPPAN 113

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +   + A++  
Sbjct: 114 PLVISQPSIRL----TDVDKVGRSGRHLTGFEMMAHHAFNYPDKFIYWIDETAEYAYEFF 169

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           TKE                           G+  ++I   T  ++ W     G  G C E
Sbjct: 170 TKEL--------------------------GIPPEEI---TFKESIWEGG--GNAGECFE 198

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           +                    R +E+  LVFM +E +   +   LP   +DTG GLER+ 
Sbjct: 199 VLV------------------RGLEVATLVFMHYEVKE-GKYVELPLKIVDTGYGLERIY 239

Query: 235 TVLQEKTNNYDIDLFKHLIQASE-------------------------QVTGMKYEGNNI 269
            +++     YD  +F   +  +                          +V G++   + I
Sbjct: 240 WLIRGTPTIYDA-VFGPYLDKARRSLGFPEPPSELMGKASVYFGQMDPEVIGLEKAYDII 298

Query: 270 V------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                 V+ DH R+ S++IADG++P+N G GY+ R ++RR +  
Sbjct: 299 AEKIGVDPKWLREVFKPQEALYVLADHSRTVSWMIADGVIPSNSGAGYLARLLLRRILKN 358

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            +L+G   P ++ L      E+ + YPE+ +A+ LI E +  E+ ++ + L     ++  
Sbjct: 359 LKLVGVETP-LVELFDMHLKELKADYPEVWEARNLILELVDIEERKYREILKSAPGVVKK 417

Query: 372 VLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
                 +      + +    LYD+ GLP +I+ +   + G+       F   L  + ++ 
Sbjct: 418 AYEEARRRGRAGFDAEDLVSLYDSFGLPPEIVAETAKSLGVEVKIPDDFYSRLAARHAK- 476

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R            KI                DL R  +   ED  +   K          
Sbjct: 477 REKQPEKTLVEMAKIA---------------DLPRTRELFYEDPYMKSFKAK-------- 513

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                       V   + G+   VV DQT FYAE GGQ  D G     G   ++ DVQ+ 
Sbjct: 514 ------------VLRVIDGK--YVVLDQTAFYAEGGGQPADIGILKHGGGAAKVVDVQRV 559

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I     +VE         +V  ID+  R  L   H+ TH+L  ++  +LG H+ Q G
Sbjct: 560 GHVIVH---VVEGEAPPEGSEVVGEIDWDRRYALMKMHTGTHVLIQSIRRVLGPHIWQAG 616

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +       R DVTH K  T+ E+  IE   N ++  N+PV  +I+ R +A A     L  
Sbjct: 617 AQKDIPASRIDVTHFKLPTAEEVAEIERLANSVVQANMPVHVKILPRNEAEAKYGFILYQ 676

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G      +RVV +   D   +    CGGTH+ STGEI L+ I     I  G+ R    T
Sbjct: 677 GGVVPAREIRVVQIG-PDEAPYDVQACGGTHLKSTGEIGLIKIQKVERIADGVVRFIFTT 735

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A  ++   + ++   AS    ++ N+V  V  + +   + +    +       E + 
Sbjct: 736 GLHALKYVQEIERQVAEAASLAGGNRDNLVDSVRRLLQRAEEAERKAQRYTELYAAEFVK 795

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             K   V      + E++ +EL   +  +       +++L  +    + +V     +   
Sbjct: 796 NLKAEPVGKYRLAVVELEDEELAKKVAQIATGRDKELVLL--VVGGGRVTVYTGGAD--- 850

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                  + +   +V  G  GGG    AQ 
Sbjct: 851 ----VGPIVKALREV--GFRGGGSRTFAQG 874


>gi|284161204|ref|YP_003399827.1| alanyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
 gi|284011201|gb|ADB57154.1| alanyl-tRNA synthetase [Archaeoglobus profundus DSM 5631]
          Length = 902

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 221/954 (23%), Positives = 379/954 (39%), Gaps = 180/954 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +
Sbjct: 63  DLKEMREYYLRFFEERGHTRIDRYPVVARWRDDIYLTIASIADFQPFVTSGVAPPPANPL 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     +DLD++G+T RH + FEM+ + +F       Y+K   +Q   +LL  
Sbjct: 123 TISQPCIRM----DDLDSIGKTGRHLSLFEMMAHHAFNYPNQHIYWKNETVQYCTELL-- 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                    +  G+  + I+     +  W+    G  GPC E  
Sbjct: 177 -------------------------QSLGVKLEDIV---YKEEPWAGG--GNAGPCLE-- 204

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
                 I GG           IE+  LVFM   +    +          +    +DTG G
Sbjct: 205 -----AIVGG-----------IELATLVFMNLVEDPNGDIVVKGSRYRKMENYIVDTGYG 248

Query: 230 LERMATVLQEKTNNYDI-------------DLFKH---LIQASEQVTGM--KYEGNNIVN 271
           LER     +     YD              D+ K    ++  S ++ G+  +  G  ++ 
Sbjct: 249 LERFVWASKGTPTVYDAVFPEVVEFILKNSDVEKPDERIVAESSKLAGIMGELSGEKLLE 308

Query: 272 HR-------------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
            R                          + DH R+  F++ DG++P+N G GY+ R ++R
Sbjct: 309 FRKNLSNRLGVSLEELERVLIPMEMVYALADHTRAILFMLGDGLVPSNAGAGYLARLMIR 368

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R++  A  +G++  +   L+      +     E       I+E L  E++++  T+ RG+
Sbjct: 369 RSLRLAEEIGFSLSIF-DLVELHRKILKEF--EFEVPLETIQEMLEIEEKKYKLTIQRGI 425

Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426
            L++  +  L K  + + +   + YD+HG+P +I+  I   RG+       F   L  + 
Sbjct: 426 SLVERKI--LRKGRV-DKEDLIEFYDSHGIPPEIVVRIAKERGVEVEMPKDFYAELASRH 482

Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486
            +A           +          Y  T+ + YD  +  +F                  
Sbjct: 483 MKAEKKVEEKKLKGS----------YPKTEKLYYDNPKLFEFTA---------------- 516

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
                 K I  +G+ V           + D+T FY E+GGQ  DTG    DG R+++ DV
Sbjct: 517 ------KVIGVEGDKV-----------ILDRTAFYPESGGQASDTGYFEVDGKRIKVLDV 559

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           Q++ +G+  H   V  G L+    +   ID   R +   +HSATHLL ++L  + G+HV 
Sbjct: 560 QEE-DGVVYH---VVEGELKVGDVVRGVIDADRRLRHMRHHSATHLLLYSLRKLYGNHVW 615

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+       R DVTH K  +  E+  IE  VN  I  N PV    M+R +A       
Sbjct: 616 QAGARKERGKARLDVTHYKKPSDEEIAEIEKLVNAEIMANKPVTWEWMDRIEAERRYGFR 675

Query: 667 LL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           L   G      +RVV V            CGGTH +STGEI    IV   SI+ G+ R E
Sbjct: 676 LYQGGVPPGRVIRVVRVG------DDVQACGGTHCNSTGEIGFFKIVRVESIQDGVIRFE 729

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLN 782
              G+ A  ++   +  LK  ++ L+V    +   VE  +EE+++   ++   KR++   
Sbjct: 730 FTAGESALEYVQEIERILKDASTILRVEPSKLPKTVERFFEEWKERGKKIERLKREIAKV 789

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
             +       + + +  +   +D+      M  + +++     + V ++ E K  V+   
Sbjct: 790 KAEKLLENAEEFDSIKVVCDVMDASM--DEMVKIAEELVKAKAVGVLMNTEGKVKVVTFS 847

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             D+  R    ++ +      GG     R  +AQ  G      D+ +  V  FL
Sbjct: 848 GIDVDARELMKEIGKRIKGGGGG-----RKEIAQGAGQIALNKDELMTIVFEFL 896


>gi|15897276|ref|NP_341881.1| alanyl-tRNA synthetase [Sulfolobus solfataricus P2]
 gi|284174525|ref|ZP_06388494.1| alanyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
 gi|14286171|sp|P96041|SYA_SULSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|13813483|gb|AAK40671.1| Alanyl-tRNA synthetase (alaS) [Sulfolobus solfataricus P2]
 gi|261601946|gb|ACX91549.1| alanyl-tRNA synthetase [Sulfolobus solfataricus 98/2]
          Length = 900

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/878 (22%), Positives = 363/878 (41%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGVTFGRHLTTFEMAAHHAFNYPDRYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +  +   L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGDYIPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           V Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 VTQKTPSAFHA-IYGNLVYKFFDKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKNVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIGFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGVPPDLLEEELKKKRVKFELPRNFYALVAKRHQTS-- 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                   T + ++  +K        +  DLL     ++   K+  +             
Sbjct: 480 --------TIKNVYDKVK--------LPKDLLEYITTLQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  I +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGIYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVVDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + +H    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG H+ Q G
Sbjct: 567 VNDVIIHVLKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGDHIWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKALTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ GI R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGIIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++   + K+   +  +  S   +  R+  I  E  K   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETEAKIAEASKIIGTSPDQLPSRLRRILNEVEKKNNLIIQYRRIVETELLNSL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINGNKIYIIEGLNDEEENKEILRKLTSTDNTIAI 841


>gi|288931271|ref|YP_003435331.1| alanyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
 gi|288893519|gb|ADC65056.1| alanyl-tRNA synthetase [Ferroglobus placidus DSM 10642]
          Length = 901

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 222/961 (23%), Positives = 376/961 (39%), Gaps = 187/961 (19%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            N+  +R  +L FF+K GHE +    ++      +  T + +  F+   T G   P    
Sbjct: 60  MNIDEMREYYLSFFEKRGHERIERYPVVARWRDDIYLTIASIADFQPFVTSGLVPPPANP 119

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +T  Q C+R      DLD++GRT RH T FEM+ + +F       Y+K   +    +LL 
Sbjct: 120 LTISQPCIRM----EDLDSIGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL- 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                        G+  ++I+     +  W+    G  GPC E 
Sbjct: 175 --------------------------NELGVRKEEIV---YKEEPWAGG--GNAGPCLE- 202

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGM 228
                  I GG           +E+  LVFM  E     +          +    +DTG 
Sbjct: 203 ------AIVGG-----------LELATLVFMNLELDPNGDIEIKGERYRRMDNYIVDTGY 245

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE----------------------- 265
           GLER     Q     YD  +F  ++    + + +++                        
Sbjct: 246 GLERFVWASQGTPTVYDA-IFPEVVDKIVENSSIEFSRKDEDMKGLLAESSKLAGVMSSL 304

Query: 266 -GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGY 299
            G  ++  R                          + DH R+  F++ DG++P+N G GY
Sbjct: 305 RGEELLKLRKSIADKFGMSVEVLDRIISPMEKAYALADHTRAILFMLGDGLVPSNAGAGY 364

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           + R ++RR++  A  +G+T  L   L+      + +   E       I+E L  E E++ 
Sbjct: 365 LARLMIRRSLRLADDIGFTLTLF-DLVELHRKILKAF--EFEVELDTIQEILELETEKYK 421

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           +T++RG  +++  +    K      +   + YD+HG+P +I+  I    G    ++    
Sbjct: 422 RTIERGKSMVERTVKRKKKVTK---EDLIEFYDSHGIPPEIVISIAEKEGAEVEEVEDLY 478

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             L  + S+A                  LK  Y  T+ + Y+                  
Sbjct: 479 AELASRHSKAEKKEKPK----------ILKNDYPETEKLYYNSKLL-------------- 514

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                               E   E +  +   V+ ++T FY E+GGQ  D G  I    
Sbjct: 515 --------------------EFEAEVIGVEGDLVILNKTAFYPESGGQDNDVGYLIAKDK 554

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++++ DV ++ +G+ VH      G LR    +   +D + R +   +H+ATHLL + L  
Sbjct: 555 KVRVVDVFEE-DGVVVHKV---DGELRVGDKVKGLVDEETRFRHMRHHTATHLLLNVLQK 610

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG HV Q G+    D  R DVTH K ++  E++ IE  VN  I  N PV    M R +A
Sbjct: 611 KLGKHVWQAGARKEKDKARLDVTHYKRLSDEEIREIEREVNREIMANKPVRWTFMERNEA 670

Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L   G      +RVV              CGGTHV STGEI +  I+   SI+
Sbjct: 671 EKKFGFRLYQGGVPPGKVIRVVQAG------DDVQACGGTHVESTGEIGMFKILKVESIQ 724

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHA 775
            G+ R E   G+ A  H+  Q+  LK  +S L+V    +   VE  +   + +K ++   
Sbjct: 725 DGVIRFEYAAGEAALEHVAKQESLLKEASSILRVEPSILPKTVERFFEEWKEQKKEIEKL 784

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
           K ++     +       + + +  ++  +D +++K++    QK  + G + ++   KE  
Sbjct: 785 KEEIAKLKAERIAENYEEFDGIKIVVERID-EDIKTLAKLGQKLAEMGFVGVLLSGKEGV 843

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             V         ++ +A +L R   K++  G GGGR  +AQ  G    + D+ +  +   
Sbjct: 844 RLVTFSG----HEKVDARELMREIGKLVK-GSGGGRRDLAQGAGQIMPEKDEVVNLLFEV 898

Query: 896 L 896
           L
Sbjct: 899 L 899


>gi|227828028|ref|YP_002829808.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|238620257|ref|YP_002915083.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
 gi|259511819|sp|C4KIK1|SYA_SULIK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|259511821|sp|C3MXH6|SYA_SULIM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|227459824|gb|ACP38510.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.14.25]
 gi|238381327|gb|ACR42415.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.4]
          Length = 900

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/878 (21%), Positives = 360/878 (41%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWRDDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           + Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 ITQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTI 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S          ++  +K        +  D+L     ++   K+  +             
Sbjct: 482 KS----------VYDKVK--------LPKDMLEYITALQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  + +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++   + K+   +  +  S   +  R+  +  E  +   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNEIEEKNNLIIQYRRIIETELLNNL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINGNKIYIIEGLGDEEENKEILRKLTSTDNTIAI 841


>gi|84490050|ref|YP_448282.1| alanyl-tRNA synthetase [Methanosphaera stadtmanae DSM 3091]
 gi|121707543|sp|Q2NEW4|SYA_METST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|84373369|gb|ABC57639.1| AlaS [Methanosphaera stadtmanae DSM 3091]
          Length = 903

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 206/953 (21%), Positives = 362/953 (37%), Gaps = 170/953 (17%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
           I+  F  FF+ +GH  +    ++       +    + +  F+   T G  +P    +   
Sbjct: 56  IQKKFKGFFKDHGHTPINRYPVLAKRWRNDVFLVGASIYDFQPWVTSGMVRPPANPLVVA 115

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q  +R     ND+DNVGRT RH T F M  + +F       Y+K   ++   + L     
Sbjct: 116 QPSIRL----NDVDNVGRTGRHMTCFTMGAHHAFNTDETPIYWKNETLRYCHEFLVS--- 168

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                                    G++ ++I   T  +++W        GP  EI    
Sbjct: 169 ------------------------IGINPEEI---TYIESWWKGGGNE--GPSFEI---- 195

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+  LVF+Q+          +P   +DTG GLER+A V Q 
Sbjct: 196 --------------CAHGVELATLVFIQYATTKDG-LKEIPLKIVDTGYGLERIAWVSQG 240

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---------------EGNNIVNHR----------- 273
               YD   F  +I     ++G++                +  +I + +           
Sbjct: 241 TPTAYDA-TFGSVIDKLTDISGVELNTEILSENARIAGMMDIEDISDLKLLRKKVADKLS 299

Query: 274 -----------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                            ++ DH R  SF++ADGI+P+N   GY+ R ++RR + Y   LG
Sbjct: 300 LDPDMLKKTTAPMEAIYIVADHTRCLSFMLADGIIPSNVKEGYLARLVLRRTVKYMNELG 359

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
             E  +  ++      +   YPE+   K  I      E+ER+  TL +G  L+   +  L
Sbjct: 360 LNES-LSDIMKMQVDYLSKTYPEIKDNKDHIINITDLEEERYHTTLTKGKNLVKRSIKTL 418

Query: 377 GK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
            K   +    D+    YD+HG+P + ++ I            +F          A AH  
Sbjct: 419 KKQNKKSFPTDMLINFYDSHGIPPETVEAISKENAFDANIPDNFYT------QIAAAHEE 472

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
                  E         +  T+   YD L+   F                    ++ V  
Sbjct: 473 EEEEEIEEMEL-----NFPKTKLSFYDDLKQRTF--------------------TAKVLG 507

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +V   +            ++ +QT +Y E GGQ  D G        +      +K +GI 
Sbjct: 508 VVDSNK------------IILNQTIYYPEGGGQPSDIGTITRVNGEVLNITYAQKVDGIV 555

Query: 555 VHHAIVE---RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           +HH   E   +        +   ID + R  L+ NH+ATHL+  +   +LG H+ Q G+ 
Sbjct: 556 LHHVAKEDESKLDNIVGEEITGEIDSKRRDLLTRNHTATHLVIASAREVLGKHIWQAGAQ 615

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
              D  R D++H K I+  E++ IE   N  + +N PV  +  +R DA       L   G
Sbjct: 616 KGLDKTRIDLSHYKRISHEEVQEIERLANKRVQENHPVNIQWYDRTDAEVKYGFKLYQGG 675

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        C GTH   TG+I ++ ++    ++ G+ R+E     
Sbjct: 676 IVPGKNIRVVEIPGID-----VQACAGTHCEKTGDIGVIKLLRTERVQDGVERLEYAVSD 730

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC- 788
                +   D+ +++ +    V    +    +  + E+++ Q      + QL    +   
Sbjct: 731 SGIKKIQDDDDIIRNSSDVFGVDAEQLPRTCKRFFNEWKEQQKRIKSLEKQLAQVKIFSL 790

Query: 789 -HKIADVNFMSHI--ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            ++IA++N  + I  + +VD+ +L+ +   L +K +   I ++  +      V     + 
Sbjct: 791 ENEIANINGYNVITEVLDVDNNQLREIAINLVEKEEVADIAILINNNGN--IVASSNNKI 848

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-PNGNKADQAIAGVASFLK 897
           L       D+     K LGG GG G+P +AQ     + ++ D+A   V   ++
Sbjct: 849 LEKGMKMGDVVNDIGKFLGGRGG-GKPTLAQGAKMTDLSRKDEAFESVKEQIR 900


>gi|307594165|ref|YP_003900482.1| alanyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
 gi|307549366|gb|ADN49431.1| alanyl-tRNA synthetase [Vulcanisaeta distributa DSM 14429]
          Length = 918

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 201/939 (21%), Positives = 364/939 (38%), Gaps = 163/939 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+++GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 58  SIRDVRERFLNFFERHGHVRIKRYPVVARWRTDVYLVGASIYDFQPWVTEGIVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +  ++ A +  TK
Sbjct: 118 TLSQPSIR----FTDIDKVGRSGRHLTGFEMMAHHAFNYPDKYIYWIDETVEYAHEFFTK 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           E  L                            D    IT  +N W     G  G C E+ 
Sbjct: 174 ELGL---------------------------KDH--EITYKENIWEGG--GNAGECLEVL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                                +EI  LVFM + +    +   +P   +DTG GLER+  +
Sbjct: 203 V------------------SGLEIATLVFMHY-RTVNGKYVEMPMKIVDTGYGLERIYWL 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-------------------------- 270
           L  K   YD  +F   I+      G+    N ++                          
Sbjct: 244 LTGKPTVYDA-VFGPFIEKLRSKLGLPKPSNEMLMHMATYFGQLDPEVTSIEKAYEYISS 302

Query: 271 -----------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                               ++ DH R+ S+++ADG++P+N G GY+ R ++RR +    
Sbjct: 303 KVGMDVNEVRNILKAQETLYILSDHGRTLSWMMADGVIPSNSGVGYLGRLLLRRMLRSMY 362

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           + G   P +  ++      +   YPE+ + +  I E +  E+ +F + L +   ++D V+
Sbjct: 363 VAGIEMP-LTEVMDMELEFLRDDYPEVYEERQTILELVDLEERKFKELLRQAPGIIDRVI 421

Query: 374 ---SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR-GLAGIDIISFNQALEEQRSRA 429
                      L  D    LYD+ GLP ++++++  +R GL+ +    F   L      A
Sbjct: 422 RDRERRTGKRELTVDDLIMLYDSQGLPPEVVREVASSRLGLSVVVPDDFYSRLA-----A 476

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R             +     +    T+ + Y+ +R                         
Sbjct: 477 RYQRQVGEEKPKVDVNPVEVQDLPQTRELFYENMR------------------------- 511

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                + Q    V   + G+   VV DQT FY E GGQ+ D G         ++ DVQ+ 
Sbjct: 512 -----LFQFNAKVLRVIRGK--YVVLDQTAFYPEGGGQVADHGVIRHSRGEARVIDVQRV 564

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I     ++E        ++   +D   R  L   H+ATH+L  ++  +LG HV Q G
Sbjct: 565 GPVIVH---VIEGEPPMEGETVEGIVDATRRLDLMRMHTATHILLQSIRRVLGRHVWQAG 621

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +       R DVTH K  +  E++ IE+  N ++  N PV+ R + R DA +     +  
Sbjct: 622 AEKNVPFSRLDVTHYKLPSRDEIRKIEELANQMVVANYPVIIRWLGRTDAESKFGVYIYQ 681

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G     ++R+V V  +D   +    CGG HV STGEI ++ IV    I+ G+ R    T
Sbjct: 682 GGAVPGAKLRIVQVGPDDN-PYDVEACGGMHVGSTGEIGMIKIVKVEKIQEGVVRFIFTT 740

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVE 784
           G+ A ++    ++ +  ++  +   + +VV  V+E+  +  K++       ++ ++ ++ 
Sbjct: 741 GRHALNYTESLEDSINEVSELIGKGREDVVKGVKELLSDVSKMEGRIKALTRKAIKGDIA 800

Query: 785 DLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           +    +  I  V F        D   ++           + +++++          ++ +
Sbjct: 801 EAMGRETAINGVGFTYMEYENEDRNYIQEFAKEYLGARPNTVLLIINRVSNG-TEYMVYL 859

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGG----GRPHMAQS 877
           + +   R +  +L       + G GGG    G+   AQ 
Sbjct: 860 SPETAKRVSIKELMARLNASVNGKGGGSTTYGQ-GFAQG 897


>gi|323477850|gb|ADX83088.1| alanyl-tRNA synthetase [Sulfolobus islandicus HVE10/4]
          Length = 900

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/878 (21%), Positives = 356/878 (40%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           V Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 VTQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTI 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S        +                  D+L     ++   K+  +             
Sbjct: 482 KSAYDKVKLPK------------------DMLEYITALQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  + +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++   + K+   +  +  S   +  R+  +  E  +   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNEIEEKNNLIIQYRRIIETELLNNL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINGNKIYIIEGLGDEEENKEILRKLTSTDNTIAI 841


>gi|94971009|ref|YP_593057.1| alanyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
 gi|205829975|sp|Q1IJG7|SYA_ACIBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|94553059|gb|ABF42983.1| alanyl-tRNA synthetase [Candidatus Koribacter versatilis Ellin345]
          Length = 1098

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/413 (45%), Positives = 261/413 (63%), Gaps = 25/413 (6%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   S +R  FL+FF   GH+ + SSSL+P NDPTL+FTN+GM  FK++F G EK  Y  
Sbjct: 14  MMTGSQVRRRFLDFFISKGHKEVHSSSLVPANDPTLLFTNAGMNQFKDVFLGVEKRDYNR 73

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFK+ AI  AW+L+T    +
Sbjct: 74  ATTSQKCVRAGGKHNDLENVGFTNRHHTFFEMLGNFSFGDYFKKDAIAYAWELVTSPDWY 133

Query: 119 DLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + Q +LY T++        D+EA++LW  + G+  +++  +   DNFW+M +TGPCGPC
Sbjct: 134 GMQQDKLYATIFKGENGVPRDDEAYQLWLDV-GVPKERVFEMGMKDNFWAMGDTGPCGPC 192

Query: 173 SEIFFDQG--------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           SE+ +D G             G      E  RY+EIWNLVFMQF++        LPK SI
Sbjct: 193 SELHYDMGVASSDKKNPECAAGECKFPCECGRYVEIWNLVFMQFDRDASGTLNPLPKPSI 252

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNHRVIV 276
           DTG GLER+  V+Q   +NYD DLF  LI+ + ++T +          +  +  + RVI 
Sbjct: 253 DTGAGLERVTAVMQGVVSNYDTDLFTPLIKRAAELTDVDEKREEAKESQSKSAASLRVIA 312

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336
           DH R+++FLI+DG++PANEGRGYVLR+I+RR + + RLLG  +P +  ++ A+   M  A
Sbjct: 313 DHSRAATFLISDGVIPANEGRGYVLRKIIRRGIRHGRLLGQNKPFLHDMVYAVRDLMQDA 372

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389
           YPEL +    + +T+ +E+ RF  TLD GL  LD  L+ L +     G ++++
Sbjct: 373 YPELKETADRVAKTVLAEETRFANTLDIGLKKLDEDLASLAETTRELGRLSWE 425



 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 189/675 (28%), Positives = 315/675 (46%), Gaps = 63/675 (9%)

Query: 271  NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL-MMHLLPAL 329
              + +  H+   + +++ G+     G G++LRR + RA    + +G    + +  +  AL
Sbjct: 433  ALKEVARHVFVVAQMLSPGMTFDTPGHGFLLRRGIYRAWMDLKAVGLDRVVRLSEIAEAL 492

Query: 330  CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR------------------------- 364
                      + +     ++ L +E ER      +                         
Sbjct: 493  SEGETGRVQSVAKNLAHTKQILDAEQERLQSASSQLEFELDAMEAEKKLAENPEMLAEQV 552

Query: 365  ----GLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416
                G  L + V++ L        + +GD AFKLYDT GLPLD M D    +G+   D  
Sbjct: 553  REVFGPALEEKVINELRGKLQSRPVYSGDKAFKLYDTFGLPLDFMVDAARDQGIE-FDQA 611

Query: 417  SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
             F+ A+E QR  ARA   G    +   I+  L E+ G   + G   L G   M   + + 
Sbjct: 612  GFDAAMESQRETARASWKGGSKLSASPIYRELAEELGTKPYPG--QLAGGHPMITPQSIF 669

Query: 477  CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-- 534
                  +      + V AI+  G  V +   G   E+V D TPFY+E+GGQ+GDTG    
Sbjct: 670  VGYTSTEFKG---ATVLAIISNGASVAQLAPGDVAEMVLDYTPFYSESGGQIGDTGWLYD 726

Query: 535  -IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              G+ +  ++  VQ   +G+  H     R  +     L   ++   RR    NH+ THLL
Sbjct: 727  STGNTVVAEVETVQSPVQGVRAHKVTA-RQNIAVGDKLNAVVNADVRRATMRNHTGTHLL 785

Query: 594  HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
            H AL  +LG HV Q GS + P  LRFD +H   +   EL+ IED VN  + +N  V    
Sbjct: 786  HAALREVLGKHVKQAGSLVDPAKLRFDFSHFTGVADEELQDIEDIVNKEVLKNDRVEVIE 845

Query: 654  -MNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             +  + A+    A AL G KY DRVRV+ +     G  S+ LCGGTH  +TGEI L+ ++
Sbjct: 846  NVPIDVAVNEYKAMALFGEKYGDRVRVIKI-----GDFSTELCGGTHTLATGEIGLIKVL 900

Query: 712  SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-----WEE 766
             E S+ +G+RR+EA+TG+ +  H     E    +++ ++ S+G    +  +       EE
Sbjct: 901  HEGSVSSGVRRLEAVTGENSVRHFRKDHELEGVVSTIVRPSEGLSPAQALKFELDRREEE 960

Query: 767  YRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
             +KL+    + +++     ++    S  ++  +  ++     +D  ++++++D L+ K+ 
Sbjct: 961  IKKLRKELEQSRMKSASSAVSSATESAREVKGIKVLATRADNIDRNQMRTLIDNLRSKLG 1020

Query: 822  SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
            SG+I+L G  ++ K ++++ VT+DL  +  A  +    AK + GG GGGRP MA++GG +
Sbjct: 1021 SGVIVL-GSVQDGKVALIVGVTKDLTSKIQAGKIIAQVAKHV-GGSGGGRPDMAEAGGKD 1078

Query: 882  GNKADQAIAGVASFL 896
                D A+      +
Sbjct: 1079 PAALDGALNATYGIV 1093


>gi|218662503|ref|ZP_03518433.1| alanyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 478

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 227/495 (45%), Positives = 325/495 (65%), Gaps = 35/495 (7%)

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
           ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI  F  A++ Q++ AR+H  G G  
Sbjct: 1   DMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQKAEARSHWAGSGEQ 59

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
            TE IWF LKEK+GAT+F+GYD                            ++V+AIV+ G
Sbjct: 60  ATETIWFELKEKHGATEFLGYDT-----------------------ETAEAVVQAIVKDG 96

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            +  EA +G KV++V  QTPFY E+GGQ+GDTG    D  +++I+D QK+ EG+FVH   
Sbjct: 97  AVAAEAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHGKIEISDTQKRGEGLFVHQGT 156

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V  G+++   ++VLT+D+  R +L  NHSATHLLH AL  +LG+HV+Q GS + P+ LRF
Sbjct: 157 VIDGVVKDGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHVAQKGSLVAPERLRF 216

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV+H KP+++ ELK +ED  N+I+ QN PV TR+M+ +DAIA GA AL G KY D VRVV
Sbjct: 217 DVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDAIAEGAMALFGEKYGDEVRVV 276

Query: 680 SV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +       + G  +S  LCGGTHVS+TG+I L+ ++ ES++ AG+RRIEA+TG+ AR +
Sbjct: 277 GMGEGVRGAKAGKPYSIELCGGTHVSATGQIGLIRVLGESAVGAGVRRIEAVTGESAREY 336

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKLQLNVED----LSC 788
           L  QDE++K+LA+ LKV  G V+ RVE + +E RKL+     AKRKL +         + 
Sbjct: 337 LAEQDERVKALAASLKVQPGEVLSRVEAMMDERRKLEKELADAKRKLAMGGGQGGSVDAV 396

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            ++A V F+   IS VD K+LK + D  +  I SG++ LVG+S + KAS ++ VT DL++
Sbjct: 397 REVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALVGVSDDGKASAVVAVTPDLVE 456

Query: 849 RFNAVDLARLSAKVL 863
           R++AVDL R+++  L
Sbjct: 457 RYSAVDLVRIASAAL 471


>gi|229585297|ref|YP_002843799.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
 gi|259511818|sp|C3MZC2|SYA_SULIA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228020347|gb|ACP55754.1| alanyl-tRNA synthetase [Sulfolobus islandicus M.16.27]
          Length = 900

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/878 (22%), Positives = 356/878 (40%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           + Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 ITQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTI 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S        +                  D+L     ++   K+  +             
Sbjct: 482 KSAYDKVKLPK------------------DMLEYITALQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  + +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+   PV    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRPVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++   + K+   +  +  S   +  R+  I  E  +   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINGNKIYIIEGLGDEEENKEILRKLTSTDNTIAI 841


>gi|15791093|ref|NP_280917.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|169236845|ref|YP_001690045.1| alanyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|22096204|sp|Q9HN24|SYA_HALSA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|205830064|sp|B0R7I0|SYA_HALS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10581694|gb|AAG20397.1| alanyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|167727911|emb|CAP14699.1| alanine--tRNA ligase [Halobacterium salinarum R1]
          Length = 929

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 221/964 (22%), Positives = 380/964 (39%), Gaps = 172/964 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           +++ +R+  + +F++ GH+ +    +        ++ T + +  F+   T G   P    
Sbjct: 61  SLTEMRSAMVSYFERAGHDSIDPYPVAANRWRDDVLLTQASIYDFQPHVTSGASPPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q C+R      D+DNVG+T RH   FEMLG+ +F     +     A+D        
Sbjct: 121 LVVSQPCIRMQ----DIDNVGKTGRHTMAFEMLGHHAFNA---DEGTDYAYD-------- 165

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
                   VY + + A +  + +       +  +T  ++ W     G  G   E+ +   
Sbjct: 166 ------GEVYWK-DTAVEHCEGLLADVGVSLDEVTFIEDPWVGG--GNAGAAFEVIY--- 213

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF--------ILPKMSIDTGMGLER 232
                          R +E+  LVFM  E+    E           + +  +DTG G+ER
Sbjct: 214 ---------------RGLELATLVFMSLERDPDGEYEMKDGHTYAEMDRRVVDTGYGVER 258

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------------------------ 268
              + Q     Y+  ++   I   ++  G+++                            
Sbjct: 259 WTWMSQGTPTVYEA-VYPDTIDFLKEQAGIEHTDEEAELVHRASKHAGNLDIDEVADIED 317

Query: 269 ----------------------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                 + +   I DH R  +++  DGI+P+N G GY+ R ++R
Sbjct: 318 ARAGIAAELGVDAERLTELVAPLEDIYAIADHSRVLAYMFGDGIVPSNVGTGYLARMVLR 377

Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366
           R       +G   P +  L+      +G       + +  I   +RSE E++G+TL+RG 
Sbjct: 378 RTKRLVDDIGADVP-LDELVDMQADRLGY------ENRDTIRSIVRSEVEKYGETLERGG 430

Query: 367 VLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
             ++ +      + E +  D   +LYD+HG+   ++ DI    G        F   +   
Sbjct: 431 RRVEQLAEEYADRGEPVPTDELIELYDSHGIQPGMVADIAADVGATVDAPDDFYSLVA-- 488

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
              AR      G+   +            T+ + YD   GS+F                 
Sbjct: 489 ---ARHDDGDSGAAGGDGGGDDRLADLPETETLYYDDAYGSEF----------------- 528

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
               ++V  + ++     E   G    +VV DQT FY E GGQ  DTG   GD   + + 
Sbjct: 529 ---EAVVLDVFER-----EGEDGDGAFDVVLDQTMFYPEGGGQPADTGVLTGDDHTVDVI 580

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DVQ++ +G+ +H      G       +   ID + RR+L  +H+ATH++ +A   +LG H
Sbjct: 581 DVQER-DGVVLHRTTDNPG---KGEFVRGQIDTERRRRLMAHHTATHIVVYAARQVLGEH 636

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q G+    D  R DVTH + +    +K IE   N+I+  N  V     +R +A A   
Sbjct: 637 VRQAGAQKGVDSSRIDVTHYERVDRETVKEIERVANEIVRANTSVQCEWPDRHEAEAEYG 696

Query: 665 AALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             L   G    +++R+V V            CGGTHV+ TGEI  + I++   ++ G+ R
Sbjct: 697 FDLYQGGIPAGEQIRLVHV------DDDVQACGGTHVARTGEIGSIKILNAERVQDGVER 750

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +    G  A  H+ GQ++ L++ A  L V+   V    E  + E++         K QL 
Sbjct: 751 LTFAAGAAAVEHVQGQEDDLRAAAEVLDVTPAEVPETAERFFTEWKDRGKTIDDLKEQLA 810

Query: 783 ---VEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                     +  DV   + ++  V  D  EL++  +AL   +  G + +VG   +    
Sbjct: 811 EARASGGGAGEEVDVAGTTAVVQRVDGDMDELQATANAL---VDGGQVAVVGSGADGAQ- 866

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGG-----GGGGGRPHMAQSGGPNGNKADQAIAGV 892
              VV        NA ++    A ++GG           P  AQ GGP+  + D A++  
Sbjct: 867 --FVVGVPDGVPVNAGEVVGELAAMVGGGGGGP------PDFAQGGGPDAERLDDALSRA 918

Query: 893 ASFL 896
           A  L
Sbjct: 919 ADVL 922


>gi|323475119|gb|ADX85725.1| alanyl-tRNA synthetase [Sulfolobus islandicus REY15A]
          Length = 900

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/878 (21%), Positives = 356/878 (40%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKDETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           V Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 VTQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTI 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S        +                  D+L     ++   K+  +             
Sbjct: 482 KSAYDKVKLPK------------------DMLEYITALQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  + +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVGGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++   + K+   +  +  S   +  R+  +  E  +   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETEAKIVEASKIIGSSPDQLTSRLRRLLNEIEEKNNLIIQYRRIIETELLNNL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINGNKIYIIEGLGDEEENKEILRKLTSTDNTIAI 841


>gi|227830765|ref|YP_002832545.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|284998279|ref|YP_003420047.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
 gi|259511820|sp|C3MR87|SYA_SULIL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|227457213|gb|ACP35900.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.S.2.15]
 gi|284446175|gb|ADB87677.1| alanyl-tRNA synthetase [Sulfolobus islandicus L.D.8.5]
          Length = 900

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 193/878 (21%), Positives = 354/878 (40%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           + Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 ITQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTI 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S        +                  D+L     ++   K+  +             
Sbjct: 482 KSAYDKVKLPK------------------DMLEYITALQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  + +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++     K+   +  +  S   +  R+  I  E  +   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINGNKIYIIEGLGDEEENKEILRKLTSTDNTIAI 841


>gi|229581674|ref|YP_002840073.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
 gi|259511822|sp|C3NG91|SYA_SULIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228012390|gb|ACP48151.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.N.15.51]
          Length = 900

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 193/878 (21%), Positives = 354/878 (40%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPTNPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           + Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 ITQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTI 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S        +                  D+L     ++   K+  +             
Sbjct: 482 KSAYDKVKLPK------------------DMLEYITALQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  + +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++     K+   +  +  S   +  R+  I  E  +   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINGNKIYIIEGLGDEEENKEILRKLTSTDNTIAI 841


>gi|126179459|ref|YP_001047424.1| alanyl-tRNA synthetase [Methanoculleus marisnigri JR1]
 gi|189082113|sp|A3CVP2|SYA_METMJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|125862253|gb|ABN57442.1| alanyl-tRNA synthetase [Methanoculleus marisnigri JR1]
          Length = 915

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 206/959 (21%), Positives = 359/959 (37%), Gaps = 185/959 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           NVS +R  FL FF+++GH  L    +       +  T + +  F+   T G   P    +
Sbjct: 58  NVSEMREAFLSFFERHGHTRLERYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K++ + L  + +  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTLFEMMAHHAFNTPEEQIYWKDQTVALCDEFIKS 173

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                               R++  ++ W     G  G   E+ 
Sbjct: 174 IGGDPA------------------------------RVSYKEHPWYGG--GNAGASVEVL 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---------NKQERFILPKMSIDTG 227
                                +E+  LVFM   +Q         N    + +    +DTG
Sbjct: 202 I------------------GGLEVATLVFMNLGRQKTDQPPVDVNGVPYYPMRLNIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDI----------------DL-----FKHLIQASEQVTGM-KYE 265
            GLER+    +     YD                 DL     F  ++  S +  G+    
Sbjct: 244 YGLERLVWASKGSPTIYDAVFPEMVSRLMRSARLEDLLDNPEFTKIMGLSARFAGVMDIS 303

Query: 266 GNNIVNHR-------------------------VIVDHLRSSSFLIADGILPANEGRGYV 300
           G N+ N R                          I DH R  ++++ D I+P+N   GY+
Sbjct: 304 GTNLYNLRRKVAEAIDVPVERLERIVVPIEKVYSIADHTRCLAYMLGDCIVPSNVREGYL 363

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360
            R ++RR +     L   +  +  L+ A    +G+   E  Q    + E + +E+ R+  
Sbjct: 364 ARLVLRRTLRMMNDLSMDDA-LTDLIEAQMQVVGAENFE--QDVDAVREIVENEEARYAS 420

Query: 361 TLDRGLVLLDGVLSHLG-KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
           TL+RG  ++  +  +   K   +  +    LYD+HG+P ++++++  A G       +F 
Sbjct: 421 TLERGARIVQKIARNYRAKSSRVPLEEVITLYDSHGIPPEMVKEVAAAEGAVVEIPDNFY 480

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + E  S A+  + G         +         T+ + Y+L    +F           
Sbjct: 481 SLIAETHSEAQKEARGED---PLDAYRERAVSLPPTKKLYYELPNEVEF----------- 526

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                     ++V                     V DQT FY E GGQ  DTG  +    
Sbjct: 527 ---------EAMVLDYFD-------------GMAVLDQTLFYPEGGGQPSDTGTLVTSES 564

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            +++ +V K  E + +H   V  G L     +   +D + R  L  +H+ATH+L HA   
Sbjct: 565 MVRVEEVVKLGE-VILHR--VTGGPLMRGDRVKGMVDEERRWSLMRHHTATHVLLHAAQQ 621

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG HV Q G+    +  R D+ H + IT  EL+ IE   N ++  + PV   +  R  A
Sbjct: 622 VLGVHVHQAGAQKGSEVSRLDIRHYRHITPDELRRIELEANRLVMADTPVYIHVEERTKA 681

Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L   G      +R V V            C GTHV +TGEI  + ++    I+
Sbjct: 682 EQKYGFGLYQGGVPPGREIRTVQVG------ADVQACAGTHVRTTGEIGPIRVLGVEHIQ 735

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ R+    G  A   +    + L+  A  + V   N+   V   + E+++ +    + 
Sbjct: 736 DGVERLVFAAGIAAVHAVQHLGDLLQESADMVSVQPENLPATVARFFSEWKEQKKEIERL 795

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           + ++   ++       V+ +  ++  +D+   + V  A     + G+ +        K  
Sbjct: 796 QKKVVDLEMQNLDGEVVDGVRVVVRTLDATHKELVALATTVADEGGVALFASSDGTVKV- 854

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVL------GGGGGGGRPHMAQSGGPNGNKADQAIA 890
               V        NAVD+ R    +L              P++AQ  GP+ ++ ++A+ 
Sbjct: 855 ----VATSGAPTVNAVDIVREVCGILGGKGGGK-------PNLAQGAGPDASRLEEALE 902


>gi|328701423|ref|XP_003241593.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 974

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/831 (28%), Positives = 372/831 (44%), Gaps = 94/831 (11%)

Query: 1   MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
             + + IR  F+++F ++N H+ + SS ++P NDPT+ F N+GM  FK++  GQ      
Sbjct: 20  FLSSNEIRKRFIDYFVKENDHKYIKSSPVVPYNDPTIAFVNAGMCQFKSVLLGQRTLAAN 79

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEF 118
            V   QKC+R GGKHNDLD VG    HHTFFEMLGN+SFG Y K  A  LAW+LLT   F
Sbjct: 80  CVANSQKCIRVGGKHNDLDIVGSDGYHHTFFEMLGNWSFGHYGKAEACHLAWNLLTLPPF 139

Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
           ++   +LY TV+        + D E  ++WK I G++ D I+    NDNFW M ETGPCG
Sbjct: 140 NIPTEQLYCTVFNGDRTLDVESDNETLQIWKNI-GVNDDHIVMNGVNDNFWEMGETGPCG 198

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI  D               G+  IE+WN+VF+Q+ +  K     LP   IDTGMGL
Sbjct: 199 PCTEIHIDYPPS----------GGKNLIELWNIVFIQYSR-EKNTMRKLPNYFIDTGMGL 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQ------ASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
           ER+  VLQ+KT+ YD DLF  +           + TG+    +    +RV+ DH R  + 
Sbjct: 248 ERLTMVLQDKTSTYDTDLFSSIFNIIFNACRISKYTGLYDGTSLDTYYRVLADHGRMITV 307

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP---LMMHLLPALCTEMGSAYPELI 341
            ++D +LP+     + LRR++R++   A      +P   L+  +   +   +G+ YPELI
Sbjct: 308 ALSDNMLPSQN---HKLRRLIRKSFILAETNFKIQPGYTLICDIANEVSNSLGNVYPELI 364

Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH----------------------LGKD 379
           +    ++  ++ E   F K           ++                        L K 
Sbjct: 365 KNNEKVKHLIKHEYAIFNKLRMSVSKDWKIMVEECPMLKSFDPYEECTGFVPACNYLIKH 424

Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439
           + ++   AF LYD  GL    +  +    G   ++     + L++ +++   H+      
Sbjct: 425 KNMSNIPAFTLYDAFGLEKKTIGRLAEVMG-KPVNWNELYEKLKKLQTKTIKHT------ 477

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ-Q 498
                     E+       G        F  E   V+       L+  + + + AIV   
Sbjct: 478 ----------ERKSNIYMTGNIPKTDDSFKYE---VIRHNNESYLSPVLIAKLLAIVDIN 524

Query: 499 GEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAEGI 553
           G IV E      G  V +V D+T FY +AGGQ  D G     +G    +  V K +  G+
Sbjct: 525 GNIVTEPDIKQQGDLVSLVLDKTSFYCKAGGQQNDIGIVKTNNGKVFDVIGVDKIEENGV 584

Query: 554 FVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
            +HH    +  IL +E  L + +D  NR  L   HS+ H+L+  L  +     +Q  SC+
Sbjct: 585 VLHHINSRDWPILLSENELHVQVDSNNRLGLMRAHSSVHILNSVL-NLYLVVTTQLSSCV 643

Query: 613 TPDGLRFDVTHSKPI-TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
             D + F         +  +   IE+ V  +I   + V    +   D        L G  
Sbjct: 644 KKDFMSFTFALFGQTFSPKDALVIEEKVKSVIQSAVSVKRTTVTSNDLNQINVTLLPGEV 703

Query: 672 YNDRVRVVSVEYE-DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ- 729
           Y D V ++ +    D    S   C GTHV +T +++   IV +         I A+TG  
Sbjct: 704 YPDEVHLIDMYSNVDDSYISREACCGTHVQNTLDVIDFCIV-QYKCNINECTIMAVTGPL 762

Query: 730 --RARSH---LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
              AR     L+G+   ++ L +   ++  +   +V  + +   +L+    
Sbjct: 763 CTNARVFGQQLLGKSNFVEDLVNSTNLNNIS-PTKVNLLMDNMNQLKSELK 812


>gi|229579660|ref|YP_002838059.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
 gi|259511823|sp|C3N7E3|SYA_SULIY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|228010375|gb|ACP46137.1| alanyl-tRNA synthetase [Sulfolobus islandicus Y.G.57.14]
          Length = 900

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 193/878 (21%), Positives = 354/878 (40%), Gaps = 152/878 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +    ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRISPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+KE     A +  T
Sbjct: 121 VVSQPSIRL----EDIDNVGITFGRHLTTFEMAAHHAFNYPDHYVYWKEETTAYATEFFT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  + +  L                                +++W     G  GPC E+
Sbjct: 177 KELGIPEEEL-----------------------------NFKESWWEGG--GNAGPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ++  +      L    +DTG G+ER+A 
Sbjct: 206 TV------------------GGLELATLVFMQYKITDNGNYTPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------EGNNIVNHRV----- 274
           + Q+  + +   ++ +L+       G+ Y                + +N    ++     
Sbjct: 248 ITQKTPSAFHA-IYGNLVYKFFNKIGVAYIDETLLKVASRFAGKIDPDNPDTIKIHRQMV 306

Query: 275 -----------------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
                                  I+DH ++   ++ADG++P+N G GY+ R ++RRA+  
Sbjct: 307 SKELGIDIKAVEEELDRAAKVFQILDHTKTIMLMLADGLVPSNSGEGYLGRLVIRRALKV 366

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            RLL  ++  +  L+          +P++++ K  I + +  E +RF K L++    +  
Sbjct: 367 LRLL-KSDVRLYELVKEQIDFWKEDFPQVLKNKDYILDAVELEQQRFEKILEK----VPS 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           + S L +   +  +   ++YD++G+P D++++ L  + +      +F   + ++   +  
Sbjct: 422 IASTLARKSEITTEDLIQVYDSNGIPPDLLEEELKKKSVKFELPRNFYALVAKRHQTSTI 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S        +                  D+L     ++   K+  +             
Sbjct: 482 KSAYDKVKLPK------------------DMLEYITALQPTEKLYYKDQ---YMRSFEGK 520

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKK 549
           V  + +               ++ D+T FY E GGQLGDTG  I +    R ++ D QK 
Sbjct: 521 VLGVYKN-------------YLILDKTTFYPEGGGQLGDTGLIIDEKSSKRYEVIDTQK- 566

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              + VH    E   ++   ++   I+++ R +L  +H+ TH++  A   +LG HV Q G
Sbjct: 567 VNDVIVHILKEEPSTIKVGDNVRGEINWERRYRLMRHHTVTHVILAAAKKVLGEHVWQAG 626

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP+  R D+TH K +T  E+K IE+  N +I+    V    MNR +A      ++  
Sbjct: 627 AEKTPEKGRLDITHHKTLTEEEVKLIENYANSVISDRRQVKPLEMNRMEAEMKYGVSIYE 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   +  +E +D  + S   CGGTHVS+T EI  + I++   I+ G+ R+E + G 
Sbjct: 687 GGVPNSATIRLLEIKDWDIES---CGGTHVSNTSEIGAVKIINVERIQDGVIRLEYVAGP 743

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               ++     K+   +  +  S   +  R+  I  E  +   +  + +  +  E L+  
Sbjct: 744 ALVDYIRETQAKIVEASKIIGTSPDQLTSRLRRILNEIEEKNNLIIQYRRIIETELLNNL 803

Query: 790 KIADVNFMS-HIISEV-DSKELKSVMDALQKKIQSGII 825
           K  ++N    +II  + D +E K ++  L     +  I
Sbjct: 804 KPYEINSNKIYIIEGLGDEEENKEILRKLTSTDNTIAI 841


>gi|321309602|ref|YP_004191931.1| alanyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
 gi|319801446|emb|CBY92092.1| alanyl-tRNA synthetase [Mycoplasma haemofelis str. Langford 1]
          Length = 841

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/869 (24%), Positives = 376/869 (43%), Gaps = 83/869 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + S +R  +++FF   GH  + + SLIP   D +L+F NSG+   K+ F+G   P  + +
Sbjct: 6   SASELRKKWIDFFVSKGHLDVSNRSLIPPSTDKSLLFINSGVAAIKSYFSGDTPPPSRRL 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QK +R G    D++++G + RHHT+FEMLGNFS G YFK  AI+ AW+ L K   +D
Sbjct: 66  VSCQKVIRTG----DIESIGESVRHHTYFEMLGNFSLGDYFKTEAIEWAWEFLIKHLGMD 121

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
             RLY+T+Y ED EA   WKK   +  D+II    + NFW M   GPCGPC+EI+FD+G 
Sbjct: 122 PDRLYVTIYKEDREAMAEWKK--WIPEDRIILGDKDTNFWDMGV-GPCGPCTEIYFDRGS 178

Query: 182 CIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  G     ++ E  RY+EIWN+VF +F      +    P+ +IDTG GLER+ +V
Sbjct: 179 SYDPDDIGLDLLRNNVENNRYLEIWNIVFSEF-LNIDGQIVPAPQKNIDTGAGLERILSV 237

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           L+ K +N++  LF  ++   +      +   +        D+ R+S  L+  GI    +G
Sbjct: 238 LEGKDSNFESSLFSPIVNFIDS----HFSKKDKKVFWSAADYFRASCILLDSGINFGGKG 293

Query: 297 RGYVLRRIMRRAMCYARLLGYTE---PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           R YVLR+I R+ +   + L   E        ++  +   +   YP ++Q K  +   L  
Sbjct: 294 REYVLRKIFRKTIWLFKSLEDKELDFTFFSGVVNVVGESLDGFYPNILQNKESLSRILHE 353

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E     K  ++   LL  ++     D  +     F L  +HGL L ++Q  L        
Sbjct: 354 EYLLSVKAYEKSHALLMQLIKKY--DAEIPAKEIFDLVTSHGLELWLIQISLAGLNRT-F 410

Query: 414 DIISFNQALEEQRSRA--RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
           D   +   +EE ++ +  R  S        + +   LK     +                
Sbjct: 411 DEKQYEALMEEHKNISFNRNISSAFIKKHPKLLALELKSSIDYSS--------------- 455

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
                             + V AI  +   + + + G    ++ D+T  +  +GGQ  D 
Sbjct: 456 --------------PEKKAKVIAIFNEDFELLQKLEG-IGYLLLDETVVFPMSGGQDSDE 500

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           G   G  I+    +  K   G  +H      G       ++++ D   R  L  +H+A H
Sbjct: 501 GYINGKSIK----ESLKAPNGQVLHKV---EGSFSLGEEVMVSHDKNKRGGLEKHHTAEH 553

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE--DNVNDIIAQNLPV 649
           LL   L   +     +       D    +V  S  I       +     +  +I ++LPV
Sbjct: 554 LLFELLKREIDKSAERVSGQKYSDYFNLEVNFSSNIEKKNFNLVHLNKELCSLIEEDLPV 613

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              ++  E A +          Y  R    S+   D G +S  LC GTHV ST EI    
Sbjct: 614 KYELLTLEKAKSLNIPIHFEEVY--RKSEDSLRLVDIGGYSRELCIGTHVQSTKEIEDAL 671

Query: 710 IVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           IV     ++ I + + I G +R    L  +  +     +FL +++ + + +     +E +
Sbjct: 672 IVGFKKKQSSIYKFKVIVGSKRVSDFLSDKSSR----EAFLSLNEEDEILK----NKEIK 723

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           K ++   K +L+  ++ +    +     +     +++ + + +V   ++ +++   + L 
Sbjct: 724 KQKISAGKLELRQRIKAV----LNSSPLVILREVDLNPQIIMAVFKEIRNELKGCTLFLF 779

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              + +   +   V  D ++    +++ +
Sbjct: 780 NEFQGE---LKYYVISDSINVLKLLEILK 805


>gi|325968423|ref|YP_004244615.1| alanyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
 gi|323707626|gb|ADY01113.1| alanyl-tRNA synthetase [Vulcanisaeta moutnovskia 768-28]
          Length = 912

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/940 (22%), Positives = 371/940 (39%), Gaps = 168/940 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  FL FF+K+GH  +    ++      +    + +  F+   T G   P    +
Sbjct: 58  SIRDVREKFLNFFEKHGHARIKRYPVVARWRTDVYLVGASIYDFQPWVTEGIVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q  +R      D+D VGR+ RH T FEM+ + +F       Y+ +  ++ A +  T 
Sbjct: 118 TLSQPSIR----FTDIDKVGRSGRHLTGFEMMAHHAFNYPDKYVYWIDETVEYAHEFFT- 172

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                    K  GL  D+I   T  +N W     G  G C EI 
Sbjct: 173 -------------------------KEIGLRDDEI---TYKENIWEGG--GNAGECLEIL 202

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                                +E+  LVFM + +    +   +P   +DTG GLER+  +
Sbjct: 203 V------------------GGLEVATLVFMHY-RTVNGKYVEMPMKIVDTGYGLERIYWL 243

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-------------------------- 270
           L  K   YD  +F   I+      G+    N ++                          
Sbjct: 244 LTGKPTVYDA-VFGSFIEQLRSKLGLPRPSNEMLMHMATYFGQLDPEVTSIEKAYEYISG 302

Query: 271 -----------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                               ++ DH R+ S+++ADG +P+N G GY+ R ++RR +    
Sbjct: 303 KVGMNINEIKNILKAQETLYILSDHGRTLSWMMADGAIPSNSGVGYLGRLLLRRMLRSMY 362

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
           + G   P +  ++      +   YPE+ + +  I E +  E+++F + L +   ++D V+
Sbjct: 363 VSGIEMP-LTEIMNMELEFLKGDYPEVYEERQTILELVDLEEKKFKELLRQAPSIIDRVI 421

Query: 374 SHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR-GLAGIDIISFNQALEEQRSRA 429
               +      L  D    LYD+ GLP +I++++  ++ GL+      F   L      A
Sbjct: 422 KDRERKTGKRELTVDDLITLYDSQGLPPEIVREVSSSKLGLSISVPDDFYSRLA-----A 476

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +             +     +    T+ + Y+ +R                         
Sbjct: 477 KYQRQIGEEKPKVDVNPVEVQDLPQTRELFYENMR------------------------- 511

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
                + Q    V   + G+   VVFDQT FY E GGQ+ D G         ++ DVQ+ 
Sbjct: 512 -----LFQFNAKVLRVIRGK--YVVFDQTAFYPEGGGQVADHGVIRHSRGEARVIDVQRV 564

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
              I      +E        ++   +D   R  L   H+ATH+L  ++  +LG H+ Q G
Sbjct: 565 GPVIVH---AIEGEPPMDGENIEGIVDATRRLDLMRMHTATHILLQSIRRVLGRHIWQAG 621

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +       R DVTH K  T  E+K IE+  N ++  N PV+ R ++R DA +     +  
Sbjct: 622 AEKNVPFSRLDVTHYKLPTRDEIKKIEELANQMVVANYPVIIRWLSRTDAESKFGVYIYQ 681

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G     R+R+V V   D   +    CGG HV +TGEI ++ IV    I+ G+ R    T
Sbjct: 682 GGAVPGARLRIVQVG-TDNDPYDVEACGGMHVGNTGEIGMIKIVKVEKIQEGVVRFIFTT 740

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVE 784
           G+ A ++    ++ +  ++  +  S+  VV  V+E+  +  +++    +  ++ ++ ++ 
Sbjct: 741 GRHAVNYADSLEDSINEISELIGKSREEVVKGVKELLNDMGRMESRIKVLTRKAIKGDIA 800

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS--GIIMLVGISKEKKASVLIVV 842
           +    +I  VN +     E ++++   + +  ++ + S    ++LV          +I +
Sbjct: 801 EAMGKEII-VNGIGLTYMEYENEDKNYIQEFAKEYLGSRPNTVLLVINRVNNGTEYMIYL 859

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGG----------GRP 872
             +     NA DL       + G GGG          GRP
Sbjct: 860 GSEAAKHVNAKDLIAKLNPGVNGRGGGSVTYGQGFTQGRP 899


>gi|146304401|ref|YP_001191717.1| alanyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
 gi|205830147|sp|A4YH91|SYA_METS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|145702651|gb|ABP95793.1| alanyl-tRNA synthetase [Metallosphaera sedula DSM 5348]
          Length = 904

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 208/894 (23%), Positives = 369/894 (41%), Gaps = 154/894 (17%)

Query: 18  NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQKCVRAGGKHND 76
           NGHE++P   ++      L  T + +V F+   T G   P    +   Q C+R     +D
Sbjct: 76  NGHEIIPPKPVLARWREDLYLTIASIVDFQPYITSGISPPPANPLVVSQPCIRM----DD 131

Query: 77  LDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVY 130
           +DNVG T  RH T FEM G+ +F       Y+K+  +  A +  TKE  + +  L     
Sbjct: 132 VDNVGITFGRHLTTFEMGGHHAFNYPDKFLYWKDETVAYAKEFFTKEMGIPEELL----- 186

Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190
                                      +++W     G  GP  E+               
Sbjct: 187 ------------------------NFKESWWEGG--GNAGPSFEVTV------------- 207

Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY------ 244
                  +E+  LVFMQ+E +   E   L    +DTG G+ER+A   Q+    +      
Sbjct: 208 -----GGLELATLVFMQYEIR-DGEYVPLKLKIVDTGYGIERLAWFTQKTPTAFHAIYGE 261

Query: 245 -----------------------------DIDLFKHLIQASEQVTG------MKYEGNNI 269
                                        D D+   +    EQV         +      
Sbjct: 262 LVDKFLEKLGLPSLNPDMLKVASRFAGRIDPDVPSTIQGHREQVAKAMGLPVKEVSEELT 321

Query: 270 VNHRV--IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
              RV  ++DH ++ + ++ DG++P++ G GY+ R ++RRA+   +LL      +  L+ 
Sbjct: 322 RAARVFQVLDHTKTIALMLGDGLVPSSGGEGYLGRLLIRRALRTLKLLNVDV-RLSELVD 380

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
                 G  + +L++ +  I + +  E E+F + L+R    +  V+S L K + +  +  
Sbjct: 381 MQIGFWGKDFTQLVRNRDYILDAVNLEQEKFNEILNR----MSSVVSSLTKKKEIGVEDL 436

Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
            +LYD+ G+P D+M + + ++GL      +F   + ++   A        +    ++   
Sbjct: 437 IQLYDSQGIPPDLMAEEMRSKGLKVEVPHNFYSIVAKRHQSAPVKKEWDTTKLPPEVVKQ 496

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
           +K+    T+ + Y       F                             +G IV+    
Sbjct: 497 VKD-LPPTEKLYYKDQYARNF-----------------------------EGVIVKSLGK 526

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
                +V D+T FY E GGQLGD G  + DG R+++ D QK   G  V H +      + 
Sbjct: 527 ----YLVLDRTVFYPEGGGQLGDQGWLLLDGQRVKVVDTQKV--GDVVVHVLEREISAKE 580

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +   ID+  R ++  +H+ TH++  A   +LG HV Q G+  TP+  R D+TH + +
Sbjct: 581 GDKVKGEIDWVRRFRMMRHHTGTHVVLAAAKKLLGDHVWQAGAEKTPEKARLDITHHRNL 640

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  E+K IE+  N ++    PV    +NR +A      ++      ++  +  +E +D  
Sbjct: 641 TREEVKRIEEMANLVVDDRRPVTPFEINRTEAETKYGVSIYEGGVPNKAVIRLLEIKDWD 700

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           V S   CGGTHV++T +I  + IV+   I+ GI R+E + G    S+    ++KL+ LAS
Sbjct: 701 VES---CGGTHVANTADIGGIKIVNVEKIQDGIIRLEYVAGDVISSYAGNLEDKLEGLAS 757

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            L+ S   +  RVE++ EE  +++ + A   ++ L    + +    +  V  +  + S  
Sbjct: 758 KLETSTSQIESRVEKLKEENERMKELIAFYRRQYLDDLEKHVETRNVGKVKIV-ILPSLK 816

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           D    +  M  L      G++++       K  + I  ++DL       +L + 
Sbjct: 817 DEDLEREAMRRLTST--QGVVVIHVNQVNGKLQIEIGTSKDLNVSTVVTELVKA 868


>gi|315425504|dbj|BAJ47166.1| alanyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 909

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/917 (21%), Positives = 355/917 (38%), Gaps = 174/917 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V   R +F+EFF + GH  +    ++      L  T++ +V F+   T G   P    +
Sbjct: 61  SVREARQSFIEFFAQRGHAPIKPYPIVARWRTDLYLTDASIVDFQPWVTNGIAPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C R      DLD +G T  RH T FEM G+ +F       Y+K    +   + +T
Sbjct: 121 VISQPCARLV----DLDKIGLTFGRHLTVFEMGGHHAFNYPEKKIYWKSETAEYCHEFMT 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +    L                                +++W+       GPC E+
Sbjct: 177 SVLGVPTGELV-----------------------------YKESWWAGGGNE--GPCLEV 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                  I GG           +E+  LVFMQF+     ER   P  ++DTG G+ER+A 
Sbjct: 206 -------IAGG-----------LELATLVFMQFKTL-DGERAETPIKTVDTGYGIERLAW 246

Query: 236 VLQEKTNNYD------------------------------IDLFKH--------LIQASE 257
             Q+  + +D                                L K         L +   
Sbjct: 247 FSQQTPSAFDAIYGELLAKVRELIPVNRPDEELLIKYAKYTGLVKPGADATVSELRRKVA 306

Query: 258 QVTGMKYEG--NNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
            + G+  E     IV +      +D+ ++ +F++A+G++P+N   GY+ R ++RRA    
Sbjct: 307 SMAGISVETVNEQIVPYEKVYQALDYSKAIAFIVAEGVVPSNVKTGYLTRLLIRRAYRLL 366

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           R++   E L+  L+          +P L + +  + + +  E  +F +T+ RG    + V
Sbjct: 367 RMVDAEEKLL-DLVDLQIRYWEKDFPHLSEMREEVLDIVEHEVNKFRETIKRGT---ETV 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L  L   + ++ +   + YD  GL  DI+ ++   +G+      +F + +  +  R    
Sbjct: 423 LRELRSTKAISVEKLIQYYDDKGLTPDIVAEVAAKQGVEVTVPENFYELVASRHLR---- 478

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
              + +   ++I  S    Y  T  + Y+      F                        
Sbjct: 479 EKPVKTTMQKQIDVS---SYPKTHKLYYEQPNSYSFR----------------------- 512

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                      + +  +   V+ D T FY E GG +GDTG  +       + D Q   E 
Sbjct: 513 ----------AKVLGVENGYVILDATLFYPEGGGAVGDTGTLVCRDKVCTVVDTQI-LED 561

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           + VH   VE  +      +   +D + R+ +  +H+ATH+L  A+  +LG H  Q G+  
Sbjct: 562 VVVHR--VEGPVPDVGEEVEGYVDAERRQAIVRHHTATHILLGAVRRVLGKHAWQAGARK 619

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GT 670
            P+  R D  H K +T  +++ IE   N ++A+ +PV  + M+R +A  +    L   G 
Sbjct: 620 EPEKGRLDFYHHKRLTLEQIREIEKLANRVVARRIPVRIKWMDRNEAEETYGFGLYQGGE 679

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RVV +   D        CGG H  +T ++ L+ IVS   I+ G+ RIE + G  
Sbjct: 680 VPLGVIRVVEIPGWDA-----EACGGIHCENTEDVGLIKIVSSERIQDGVERIEFVAGPA 734

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
                 G +  L  +A  L+    ++  +V E+ E  R L+       ++   E L  ++
Sbjct: 735 NLHRYQGMETMLHEVAEKLQAPVEDIPKKVAELDENLRILRKT-----VKTLSEKLIVYR 789

Query: 791 IADVNFMSHIISEV----------DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
            A++  +   +  +          D + L  +   + K  +  + +    +   K  V +
Sbjct: 790 AAEIRSVGIAVDSLLLYISEEEYDDEEYLIKLAAEIVKVDKPAVALAYAGTPSAKV-VAV 848

Query: 841 VVTEDLLDRFNAVDLAR 857
              + +    N  ++ R
Sbjct: 849 ANDKAVAAGVNVGEVLR 865


>gi|307353744|ref|YP_003894795.1| alanyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
 gi|307156977|gb|ADN36357.1| alanyl-tRNA synthetase [Methanoplanus petrolearius DSM 11571]
          Length = 912

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/973 (21%), Positives = 363/973 (37%), Gaps = 198/973 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  +L FF+K GH+ +    +       +  T + +  F+   T G   P    +
Sbjct: 58  SLDEMREAYLSFFEKQGHQRISRYPVAARWRDDIYLTIASIADFQPFVTSGVVPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
           T  Q C+R     NDLD+VGR+ RH T FEM+ + +F       Y+K+R ++L    +  
Sbjct: 118 TISQPCIRL----NDLDSVGRSGRHLTTFEMMAHHAFNTDKNEIYWKDRTVELCDLFI-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                   + I G   D    +T  ++ W     G  GP  E+ 
Sbjct: 172 ------------------------ESIGGNLED----VTYKEHPWIGG--GNAGPSVEVM 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ---------ERFILPKMSIDTG 227
                                +E+  LVFM   +               + +    +DTG
Sbjct: 202 I------------------GGLEVATLVFMSLGKMANGRTPIELEGVPYYPMDLRIVDTG 243

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----------------KYEGNNIV 270
            GLER     +     YD  +F  ++       G+                 KY G   +
Sbjct: 244 YGLERFVWASKGSPTIYDA-VFPEMVNDLMISAGLENLLQSSELAKILAMNAKYAGQMDI 302

Query: 271 N-------------------------------HRVIVDHLRSSSFLIADGILPANEGRGY 299
           +                                  I DH R  ++++ D I+P+N   GY
Sbjct: 303 SGSNLIKMRKEVAKTIGVGFEKLQALMDPVERVYAITDHTRCLAYMLGDCIVPSNAQEGY 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE-LIQAKLLIEETLRSEDERF 358
           + R ++RR +     +G   P +  L+     +M    P+   Q   +I E + +E  ++
Sbjct: 363 LARLVIRRTLRMMNEIGLETP-LYELIE---KQMKIIGPDSFEQKPSVINEIIENEVVKY 418

Query: 359 GKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417
            +T++RG  ++  +  S+ GK E +       LYD+HG+P +I++DI     +       
Sbjct: 419 EQTMERGARIVRKIAGSYRGKKEPVPLKELITLYDSHGIPPEIVRDIAAEESVEVDLPDD 478

Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLK---EKYGATQFIGYDLLRGSKFMKEDRK 474
           F   + +  S           G  E  + +L+   E    T+ + Y+ +  ++F      
Sbjct: 479 FYSVVADMHSE-------NDEGVKEDPYAALRKRIEGLPPTKRLYYEQVADTEF------ 525

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                  ID  +                          V+ DQT FY E GGQ  D G  
Sbjct: 526 ---DAMVIDAFDN------------------------YVILDQTLFYPEGGGQPADIGRL 558

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           + +   +++    K  E I      +E G +R  + +   ID   R  +  +HSATH+L 
Sbjct: 559 LSENAMVKVVHTFKLGEVILH---RIEGGDIRRGVQVKGVIDENFRLTMMRHHSATHVLL 615

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
           HA   +LG H+ Q G+    +  R D+ H K IT  EL+ IE   N II +N  +V    
Sbjct: 616 HAAKHVLGPHIHQAGAQKGFESSRIDLRHFKHITPEELQKIEIEANRIILENQKIVIEWE 675

Query: 655 NREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +R  A       L   G      +R+V V            C GTH  STGEI  L I+ 
Sbjct: 676 DRTTAEQKYGFDLYQGGVPPGKMIRIVKVSG------DVQACAGTHCRSTGEIGCLKIIR 729

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
              ++ GI R+E   G  A +++   +  L S    L V + N+   V+  + E++  + 
Sbjct: 730 VEHVQDGIERVEFAAGLSAIAYMEKMEGLLDSSCQTLSVQRENLPSSVDRFFSEWKDQKK 789

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
              K   +L    L      ++  +S  + EV++   + V  A +   + G+ ++ G   
Sbjct: 790 EIEKLGKELGELRLEGLSSEEIGGISVAVHEVNASPKELVSIATKFANEGGVGLVAG--G 847

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKA 885
           E +  V+        +R NA DL      ++                 +AQ  G      
Sbjct: 848 EDRIHVVAASG---TERINAADLVTKVCGMIGGKGGGKP--------GLAQGVGTEKENL 896

Query: 886 DQAIAGVASFLKK 898
            +A+    + + +
Sbjct: 897 SEALQQGKNMISE 909


>gi|149236429|ref|XP_001524092.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452468|gb|EDK46724.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 436

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/410 (39%), Positives = 237/410 (57%), Gaps = 29/410 (7%)

Query: 3   NVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S++R+TFL++F+    H  +PSSS++P NDPTL+F N+GM  +K IF G   P     
Sbjct: 23  TASTVRSTFLDYFKSKRDHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPSSDFA 82

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI  +W+LLT+
Sbjct: 83  KLKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGWSWELLTE 142

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + L++ RLY+T ++ DE        EA   W  + G++ D I+     DNFW M + GP
Sbjct: 143 VYGLEKDRLYVTYFEGDEKQGLEPDMEAKNFWLSV-GVAEDHILPGNAKDNFWEMGDQGP 201

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +E+WN+VF+Q+ +++      LP   IDTGM
Sbjct: 202 CGPCSEIHYDRIGG-RNAASLVNMDDPNVLEVWNIVFIQYNRESDGSLRPLPSKHIDTGM 260

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHL 279
           G ER+ +VLQ K++NYD D+F  +     ++TG++                 +RVI DH+
Sbjct: 261 GFERLVSVLQNKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIADHV 320

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY--TEPLMMHLLPALCTEMGSAY 337
           R+ +F I DG +P NEGRGYVLRRI+RR   Y R             L+  +  +    +
Sbjct: 321 RTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKEIF 380

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGD 385
           PEL +    ++E L  E+  F KTLDRG  L +   +++    ++ L+G 
Sbjct: 381 PELERGVADLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGK 430


>gi|315427515|dbj|BAJ49118.1| alanyl-tRNA synthetase [Candidatus Caldiarchaeum subterraneum]
          Length = 865

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/917 (21%), Positives = 355/917 (38%), Gaps = 174/917 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V   R +F+EFF + GH  +    ++      L  T++ +V F+   T G   P    +
Sbjct: 17  SVREARQSFIEFFAQRGHAPIKPYPIVARWRTDLYLTDASIVDFQPWVTNGIAPPPANPL 76

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C R      DLD +G T  RH T FEM G+ +F       Y+K    +   + +T
Sbjct: 77  VISQPCARLV----DLDKIGLTFGRHLTVFEMGGHHAFNYPEKKIYWKSETAEYCHEFMT 132

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               +    L                                +++W+       GPC E+
Sbjct: 133 SVLGVPTGELV-----------------------------YKESWWAGGGNE--GPCLEV 161

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                  I GG           +E+  LVFMQF+     ER   P  ++DTG G+ER+A 
Sbjct: 162 -------IAGG-----------LELATLVFMQFKTL-DGERAETPIKTVDTGYGIERLAW 202

Query: 236 VLQEKTNNYD------------------------------IDLFKH--------LIQASE 257
             Q+  + +D                                L K         L +   
Sbjct: 203 FSQQTPSAFDAIYGELLAKVRELIPVNRPDEELLIKYAKYTGLVKPGADATVSELRRKVA 262

Query: 258 QVTGMKYEG--NNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
            + G+  E     IV +      +D+ ++ +F++A+G++P+N   GY+ R ++RRA    
Sbjct: 263 SMAGISVETVNEQIVPYEKVYQALDYSKAIAFIVAEGVVPSNVKTGYLTRLLIRRAYRLL 322

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           R++   E L+  L+          +P L + +  + + +  E  +F +T+ RG    + V
Sbjct: 323 RMVDAEEKLL-DLVDLQIRYWEKDFPHLSEMREEVLDIVEHEVNKFRETIKRGT---ETV 378

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           L  L   + ++ +   + YD  GL  DI+ ++   +G+      +F + +  +  R    
Sbjct: 379 LRELRSTKAISVEKLIQYYDDKGLTPDIVAEVAAKQGVEVTVPENFYELVASRHLR---- 434

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
              + +   ++I  S    Y  T  + Y+      F                        
Sbjct: 435 EKPVKTTMQKQIDVS---SYPKTHKLYYEQPNSYSFR----------------------- 468

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                      + +  +   V+ D T FY E GG +GDTG  +       + D Q   E 
Sbjct: 469 ----------AKVLGVENGYVILDATLFYPEGGGAVGDTGTLVCRDKVCTVVDTQI-LED 517

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           + VH   VE  +      +   +D + R+ +  +H+ATH+L  A+  +LG H  Q G+  
Sbjct: 518 VVVHR--VEGPVPDVGEEVEGYVDAERRQAIVRHHTATHILLGAVRRVLGKHAWQAGARK 575

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GT 670
            P+  R D  H K +T  +++ IE   N ++A+ +PV  + M+R +A  +    L   G 
Sbjct: 576 EPEKGRLDFYHHKRLTLEQIREIEKLANRVVARRIPVRIKWMDRNEAEETYGFGLYQGGE 635

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
                +RVV +   D        CGG H  +T ++ L+ IVS   I+ G+ RIE + G  
Sbjct: 636 VPLGVIRVVEIPGWDA-----EACGGIHCENTEDVGLIKIVSSERIQDGVERIEFVAGPA 690

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
                 G +  L  +A  L+    ++  +V E+ E  R L+       ++   E L  ++
Sbjct: 691 NLHRYQGMETMLHEVAEKLQAPVEDIPKKVAELDENLRILRKT-----VKTLSEKLIVYR 745

Query: 791 IADVNFMSHIISEV----------DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
            A++  +   +  +          D + L  +   + K  +  + +    +   K  V +
Sbjct: 746 AAEIRSVGIAVDSLLLYISEEEYDDEEYLIKLAAEIVKVDKPAVALAYAGTPSAKV-VAV 804

Query: 841 VVTEDLLDRFNAVDLAR 857
              + +    N  ++ R
Sbjct: 805 ANDKAVAAGVNVGEVLR 821


>gi|71902035|ref|ZP_00684078.1| Alanine--tRNA ligase [Xylella fastidiosa Ann-1]
 gi|71728198|gb|EAO30386.1| Alanine--tRNA ligase [Xylella fastidiosa Ann-1]
          Length = 528

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 182/558 (32%), Positives = 300/558 (53%), Gaps = 40/558 (7%)

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           +  TL +E+ERF +TLD G+ + + V + +  + ++ G  AF+LYDT+G P+D+  DI  
Sbjct: 2   VMRTLLAEEERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIAR 60

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
            RG+  +D+  F  A+ +QR  ARA       G   ++          T F+GY+ L+  
Sbjct: 61  ERGMR-VDMAGFEAAMTQQRKTARAAGKF---GRGVQLSAERAAMLSPTVFLGYEQLQAD 116

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                    V A++  G + + A  G +V V+ D+TPFYAE+GG
Sbjct: 117 GLR----------------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGG 154

Query: 527 QLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           Q+GD G  +  DG+RL++TD QK       H A + +G ++    L  ++    R+ +++
Sbjct: 155 QVGDIGTLMASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVAL 214

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
           NHSATHLLH AL ++ G+HV+Q GS + PD LRFD +H +PI++ ++  IE  VND +  
Sbjct: 215 NHSATHLLHCALRSVFGNHVAQKGSLVAPDRLRFDFSHFEPISAVQMTLIERMVNDEVRA 274

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N  V+   M  + A+ +GA AL G KY + VRVV++        S  LCGGTH++ TG+I
Sbjct: 275 NHLVMIEQMGMQAALDAGAMALFGEKYGEHVRVVTMG------TSVELCGGTHITRTGDI 328

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            L  I+SE  + +G+RRIEA+TG+ A +H++ ++ +L  +A  +  +  +VV  + ++ +
Sbjct: 329 GLFKIISECGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTD 388

Query: 766 EYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
             + L+    K K +L    +         +ADV  ++  +  +D K L+  +D L+ ++
Sbjct: 389 RQKTLERELEKLKGKLLSGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQL 448

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
              +I+L G++  K A V  V     + +  A  L    A  +  G GGGR   AQ GG 
Sbjct: 449 SDAVIVLAGVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQIN-GRGGGRVDFAQGGGE 507

Query: 881 NGNKADQAIAGVASFLKK 898
           +G     A+  VA+++K+
Sbjct: 508 DGPSLRSALDSVATWVKQ 525


>gi|255028973|ref|ZP_05300924.1| alanyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 520

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 181/550 (32%), Positives = 286/550 (52%), Gaps = 41/550 (7%)

Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           RF +TL+ GL +L+ +L    +  ++++ G   FKLYDT G P+++ ++     GL  +D
Sbjct: 1   RFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VD 59

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474
              F   ++EQR+RARA    + S   +     L      + F+GY+             
Sbjct: 60  HAGFEAEMKEQRARARAARADVKSMQVQGEL--LANLTEKSAFVGYNSTEH--------- 108

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                          S +  ++Q   +V+E  +G + +V+F +TPFYAE+GGQ+ D G  
Sbjct: 109 --------------VSEILYLIQNDTLVDEVAAGNEAQVIFKETPFYAESGGQVADKGTI 154

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
             +     + DVQK      +H   V+ G+L+T  ++ L +D   RR+   NH+ATHLLH
Sbjct: 155 ESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLH 214

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+ I + + VV   M
Sbjct: 215 RALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEM 274

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
              +A   GA AL G KY D VRVV V     G +S  LCGG HV +T +I L  IVSE+
Sbjct: 275 PIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSET 329

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE +  + R+++  +
Sbjct: 330 GIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVELLQADLREVKREN 389

Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
                +L     +       +I  V  ++  ++  D  +L+  +D  + K   GI++L  
Sbjct: 390 ESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGILVLGA 449

Query: 830 ISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
           +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MAQ+GG N  +   A
Sbjct: 450 VQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELGTA 507

Query: 889 IAGVASFLKK 898
           +  V++++K+
Sbjct: 508 LDYVSTWVKE 517


>gi|320534359|ref|ZP_08034846.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133441|gb|EFW25902.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 632

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/648 (30%), Positives = 323/648 (49%), Gaps = 47/648 (7%)

Query: 268 NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
           + V  RV+ DH+RS+  LI+DG+ P N+GRGYVLRR++RRA+   RLLG  E  M  LL 
Sbjct: 13  DDVRMRVVADHVRSALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLT 72

Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EI 381
           A    M ++YPEL      I E    E++ F +TL  G  +LD  ++   K+       +
Sbjct: 73  ASKDAMKASYPELETGWSAICEVAYGEEDAFRRTLAAGTTILDIAVASAKKEAGRTGRPL 132

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           ++G  AF+L+DT+G P+D+  ++   +G+  +D  +F   + EQ+ RARA +    +G  
Sbjct: 133 VSGKSAFELHDTYGFPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHA 191

Query: 442 EKIWFSLKEK--YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
           +   F   EK   G + F+GY                         +   + V  ++  G
Sbjct: 192 DIRVFRELEKEMGGGSTFLGY-----------------------TESSAEATVAGVLVGG 228

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHA 558
                  +  +VEV+ D+TPFYAE GGQL D G   + DG  +++ DVQ   +G+ VH  
Sbjct: 229 VPQSVVTAPAEVEVILDRTPFYAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRG 288

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +  G +         ID   R  ++  H++TH++H AL  I+  + +Q GS  +P  +R
Sbjct: 289 TLTEGTIAVGEKAFAQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMR 348

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD  H   +   ++  IE+ VN  ++++L V   +M+ + A A+GA AL G KY   VRV
Sbjct: 349 FDFRHGSALAGDQISGIEERVNARLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKEVRV 408

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           VS+    GG  S  LC GTHV STG I  + ++ ESSI +G+RRI+A+ G+ A  +   +
Sbjct: 409 VSI----GGDWSKELCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGAYGYQAKE 464

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIAD 793
              +  L++ +     ++  RVE +    +  +   A  +                ++ +
Sbjct: 465 HALVSQLSTMVGGRPEDLPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVRVDE 524

Query: 794 VNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN- 851
           V   S  +  V  +  ++S++   + ++      +V +     +  ++VV      R   
Sbjct: 525 VRLASANLGSVGSADAVRSLVLDARSRLGDSDPAVVAVGAVVGSRPVVVVATSAGARDKG 584

Query: 852 --AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             A  L R +A+VLGGGGG G+  +AQ GG N    D+A+  VA  +K
Sbjct: 585 IRAGALVRTAAQVLGGGGG-GKDDLAQGGGQNPEALDEALRAVAEQIK 631


>gi|309243075|ref|NP_001035124.2| alanyl-tRNA synthetase, cytoplasmic isoform 2 [Danio rerio]
          Length = 433

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/410 (39%), Positives = 240/410 (58%), Gaps = 25/410 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG+   +   + F 
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPEGMLFT 413


>gi|254167135|ref|ZP_04873988.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623991|gb|EDY36553.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 882

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/953 (22%), Positives = 376/953 (39%), Gaps = 190/953 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V S+R +F+EFF+KNGHE +    ++      +   N+ +  F+   T G   P    +
Sbjct: 58  TVESMRKSFIEFFKKNGHEEIKRYPVVARWRDDVFLVNASIYDFQPHVTSGLAPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q C+R      D+D+VG+T RH T FEM+ + +F       Y+K+  ++ A  L+  
Sbjct: 118 VISQPCIRMV----DVDSVGKTGRHLTGFEMMAHHAFNYPDNPIYWKDETVEYALKLI-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                   +++ G   + +      +  W     G  G   E+ 
Sbjct: 172 ------------------------EELGGEPDNVV----FKEKPWIGG--GNAGASFEVI 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
           +                    +EI  LVFM  ++ +  +          +P   +DTG G
Sbjct: 202 Y------------------GGLEIATLVFMNLKEDDNGDIELNGTRYSEMPVKVVDTGYG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR---------------- 273
           LER     +     YD  ++  +I   E   G+          R                
Sbjct: 244 LERFVWASKGTPTIYDA-IYPEMISMLEDRIGISRNDRKNEILRQFALLSPRIEIENENE 302

Query: 274 ---------------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                       +VD+ RS +F++ DGI+P+N   GY+ R ++R
Sbjct: 303 LINEVLKATGASMKEYKEFILPLQKIYAVVDYTRSLAFMLTDGIVPSNVQGGYLARLLIR 362

Query: 307 RAMCYARLLGYTEPLM-MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           R +     L    P+M   L+                   ++ E L  E+ER+ KTL +G
Sbjct: 363 RTLKLLDDL--KNPVMIGELVKMHIERFSDIMD--SSMLPIVLEELEIEEERYRKTLSKG 418

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           + ++     H+ K+  +  D     YD+HGL  +I+ ++  + G+      +F+  + ++
Sbjct: 419 MDIVKR---HIKKNGKITTDDLILFYDSHGLLPEIVANVAESMGIRVDIPDNFHGLVAKR 475

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
                       S   +K     +     T+ + Y+     +F                 
Sbjct: 476 HE----------SVARKKKKEKKQYNLPPTRKLYYENPYLREFEAN-------------- 511

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                    +   G            EVV D T FY E GGQ  D G  I +G   ++ D
Sbjct: 512 --------VVYSNGR-----------EVVLDATAFYPEGGGQPADRGKIICNGREYEVVD 552

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK    + VH   ++ G +     +   +D++ R +L  NH+A H+L  A   +LG HV
Sbjct: 553 VQK-FGDVVVHF--LKDGHIEKGCKIKGILDWERRERLMRNHTAEHVLLAACRRVLGKHV 609

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q+G+       RFD+ H KPI   E+K IE+    II   +PV  + MNR +A      
Sbjct: 610 WQHGTQKDVKECRFDIAHYKPIGREEIKRIEEEAMRIITSCVPVDAKFMNRTEAEKKYGF 669

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G      +RVV +     G      CGGTHV++TGEI  L I+    I+ G+ RI
Sbjct: 670 VLYEGGIPPGKEIRVVLI-----GDFDVEACGGTHVNNTGEIGFLKILRTERIQDGVSRI 724

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
              +G  A  +   +++ L + AS L V    +   V+  ++E+++ + I  K  L+ + 
Sbjct: 725 IYTSGLSALEYTQEREDILNNSASVLGVQPEKLPLAVKRFFDEWKEQRKIIEK--LKRSQ 782

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            +    ++A    ++ ++  +D K L  +   L   ++ G+++      E  + V     
Sbjct: 783 MESIKKELASQKAVAEMLP-LDMKALSILARELMSNVERGVLI-----GEDGSFVAFG-- 834

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             L  +  A+++AR     +  G  GG+   AQ  G N ++ ++A+      L
Sbjct: 835 --LEAKRIALEIAR-----VMHGKAGGKESFAQGKG-NKDRIEEALNTARKLL 879


>gi|66911311|gb|AAH97014.1| Zgc:113920 [Danio rerio]
 gi|213624850|gb|AAI71667.1| Zgc:113920 protein [Danio rerio]
 gi|213624852|gb|AAI71669.1| Zgc:113920 protein [Danio rerio]
          Length = 433

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 162/410 (39%), Positives = 239/410 (58%), Gaps = 25/410 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFK  A ++A +LLT+E
Sbjct: 66  LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +        + D E  ++W  + G+   +I+  +  DNFW M +TGPC
Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSEI +D+           + +    +EIWNLVF+QF ++++     LPK SIDTGMG
Sbjct: 185 GPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDTGMG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+ +VLQ K +NYD DLF    +A ++ TG +               + +RV+ DH R
Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLADHAR 303

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
           + +  ++DG  P N GRGYVLRRI+RRA+ Y+   LG        L+  +   +G A+PE
Sbjct: 304 TITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDAFPE 363

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389
           L +   ++++ +  E+ +F KTL RG  +LD  +  LG    +   + F 
Sbjct: 364 LRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPEGMLFT 413


>gi|47213378|emb|CAF93331.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1043

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/468 (37%), Positives = 257/468 (54%), Gaps = 26/468 (5%)

Query: 7   IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60
           +R+TF++FFQ K+GH L+PSS + P  DP+L+F N+GM  FK +  G   P      Y+ 
Sbjct: 30  VRSTFVDFFQQKHGHVLVPSSPVRPRGDPSLLFVNAGMNQFKPLLLGTADPRSAMARYRR 89

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKCVRAGGKHNDL++VGR   HHTFFEMLG +SFG YF + A  +AW LLT+ + +
Sbjct: 90  VVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGTWSFGDYF-KEACLMAWSLLTEHYGI 148

Query: 121 DQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
              RLY++ +  D        EE   +W  I G+  D+++     DNFW M ++GPCGPC
Sbjct: 149 AAERLYVSYFGGDTASGLPADEETRHIWLDI-GVPHDRLLPFGLKDNFWEMGDSGPCGPC 207

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI +D            + +    +EIWNLVFMQ+ ++      +LP++S+DTGMGLER
Sbjct: 208 TEIHYDHVGGRRAAA-LVNADHPDLVEIWNLVFMQYNRELDGSLRLLPQLSVDTGMGLER 266

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------IVNHRVIVDHLRSSSFLI 286
           +  VLQ K +NYD DLF  L+ A +Q                 V +RV+ DH+R+ +  I
Sbjct: 267 LVRVLQGKRSNYDTDLFAPLLLAIQQAGPYGGGVGPAGAGRVDVAYRVVADHVRALAVCI 326

Query: 287 ADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           ADG+ P   G   VLRRI+RRA+ + + +L      +  L+P +C  +G AYPEL +   
Sbjct: 327 ADGVYPGMSGAELVLRRILRRAVRFCSEVLQAPPGTLASLVPTVCHILGDAYPELHKEAD 386

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDI 404
            I   +   +  F  +L RG  L+   L     KD +    VA+ L+   G PLD++  +
Sbjct: 387 TIVNIINENEAHFLSSLQRGSRLIQHTLRKQDDKDGVFPAAVAWSLHRDLGFPLDLVDLM 446

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           L  RG   +D    +Q + E + +    S   G  T + +  +  ++ 
Sbjct: 447 LEERGFR-VDHQELDQLISESKVQGGLQSHDRGPLTLDVLSLAELQRL 493



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 95/234 (40%), Gaps = 34/234 (14%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD----GLRFDVTHSKPITSA----- 630
           R    + H+ THLL+ AL  +LG  V Q GS ++      GL+     S  +  A     
Sbjct: 668 RLACMVKHTGTHLLNFALRKVLGPSVQQRGSHVSAHPPALGLQRPAAESCCVPQAALSVR 727

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV--------SVE 682
           EL+ ++  V DII+ +  V ++ +  + A +      +   Y D VRVV         ++
Sbjct: 728 ELQEVDALVRDIISADQQVHSQEVPLQTARSIRGLRTVDEVYPDPVRVVSVGVPVSDLLD 787

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE-- 740
            +  G  S  LC GTH+  TG I  L IVSE  +  G+ RI A+TGQ A           
Sbjct: 788 GQSDGQTSVELCCGTHLLRTGAIRDLVIVSERQVVKGMSRILAVTGQDATQVGAKDGAAL 847

Query: 741 --------------KLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQLIHAKRKL 779
                         + +  A  L      +  R+      +    Q +  KR+L
Sbjct: 848 PAAGGAHALMLLCVQAREAAQLLSQEVDALSARLAGSAPTDLDSAQRLANKREL 901


>gi|15921648|ref|NP_377317.1| alanyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|21264016|sp|Q971J4|SYA_SULTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|15622435|dbj|BAB66426.1| 904aa long hypothetical alanyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 904

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 210/901 (23%), Positives = 367/901 (40%), Gaps = 152/901 (16%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL+FF+K GH ++P   ++      L  T + +V F+   T G   P    +
Sbjct: 62  TVREARQKFLKFFEKKGHTIIPPKPVLARWREDLYLTIASIVDFQPFVTSGIVPPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  ++L+ +   
Sbjct: 122 VLSQPCIRL----EDVDNVGVTFGRHLTTFEMAAHHAFNYPDKQIYWKDETVELSKEFFV 177

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E  + +  L                                +++W     G  GP  E+
Sbjct: 178 EEIGIPEEEL-----------------------------NYKESWWEGG--GNAGPSFEV 206

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E +       L    +DTG G+ER+A 
Sbjct: 207 TV------------------GGLELATLVFMQYEIK-DGNYVPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNY-----------------------------------DIDLFKHLIQASEQVT 260
             Q+    +                                   D D  + + +  E+V 
Sbjct: 248 FTQKTPTAFHAIYGNLVYTFFNKIGAPLVDDELLKTAAILAGRIDPDKPETIKRHREEVA 307

Query: 261 G-----MKYEGNNIV-NHRV--IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                 +KY    +    RV  ++DH ++ + ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KKLGLDLKYVDQELTRAARVFQVLDHTKTIALMLADGLVPSNSGEGYLGRLLIRRALRVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLLG     +  L+          +P+L++ K  I + +  E ERF +TL +    +   
Sbjct: 368 RLLGSDIK-LYELVKEQIEYWKEDFPQLLKNKDYILDVVNLEQERFNETLSK----ISLT 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG--LAGIDIISFNQALEEQRSRAR 430
            S L + + ++ D   KLYD++G+P D++ + +      +      +F   + ++     
Sbjct: 423 ASSLSRRKEISVDDLVKLYDSNGIPPDLLVEEIRKINPEIKVEVPYNFYGLVAKRHQTVP 482

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                      + I   L E    T+ + Y+      F                    ++
Sbjct: 483 LKDTKKEKLPKDVI--DLAENLPPTKKLYYEDQYKRSF--------------------TA 520

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKK 549
            V ++ +               +V DQT FY E GGQ+GDTG    + G   Q+ D QK 
Sbjct: 521 KVVSVYKN-------------YLVLDQTTFYPEGGGQIGDTGIIKDEKGNTYQVVDTQKV 567

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            + IF  H + +   L+    +   ID+Q R ++  +H+ TH++  A   +LG HV Q G
Sbjct: 568 KDVIF--HILDKEPSLKEGDEVYGEIDWQRRYRIMKHHTVTHVILSAARKVLGEHVWQAG 625

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           +  TP   R D+TH K  T  E+K IED  N II     V   I+NR +A      ++  
Sbjct: 626 AEKTPQKGRLDITHYKLPTEEEIKKIEDLANYIINDRRSVRPLIINRTEAEMKYGVSIYA 685

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
               +   V  +E +D  +     CGGTH+S+T EI  L I++   I+ G+ R+E + G 
Sbjct: 686 GGVPEGADVRLIEIKDWDI---EGCGGTHLSNTSEIGALKIINVEKIQDGVIRLEYVAGD 742

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               +   +++KLK ++  L  S   +  R++   EEY++ + +  + +  +  E  +  
Sbjct: 743 VVAQYARQEEDKLKEISRQLSTSPEQIEVRLKRFLEEYKEKEELLNQYRKMMLQEIENIS 802

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
           K   VN ++  I  +  +EL+          Q  I++ +          +    +  +D+
Sbjct: 803 KKETVNGVTIYIINLFDEELRKEAMRKLTMNQKSIVVNISNKGNNNVVEIATSNDLRVDK 862

Query: 850 F 850
            
Sbjct: 863 I 863


>gi|124028451|ref|YP_001013771.1| alanyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
 gi|205830069|sp|A2BN65|SYA_HYPBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|123979145|gb|ABM81426.1| Alanyl-tRNA synthetase [Hyperthermus butylicus DSM 5456]
          Length = 921

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 216/930 (23%), Positives = 365/930 (39%), Gaps = 163/930 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +V   R  F+EFF+++GHE +    ++      L  T + +V F+   T G   P    +
Sbjct: 60  SVRDARRKFIEFFKRHGHEYVEPRPVVARWREDLYLTIASIVAFQPHVTSGIVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ C+R      D+D VG T  RH T FEM G+ +F       Y+KE  ++ A++  T
Sbjct: 120 VIVQPCIRL----EDIDFVGLTIGRHLTSFEMGGHHAFNYPDKTVYWKEETVRFAFEFFT 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     K  G+  D +   T  +++W     G  GP  E+
Sbjct: 176 --------------------------KELGIPEDMV---TFKESWWEGG--GNAGPSFEV 204

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+ +    +   +    +DTG G+ER+A 
Sbjct: 205 TV------------------GGLELATLVFMQY-RVVDGKYEPMDIRVVDTGYGIERIAW 245

Query: 236 VLQEKTNNYDI------DLFKHLIQASEQ----VTGM----------------KYEG--- 266
             Q+    +        D F+ L+  +E     + G                 +Y     
Sbjct: 246 FSQDVPTAFHAIYGELLDEFRKLLGVAEPPRELLWGAARAAGRLDPEDPESVERYYQVVA 305

Query: 267 --------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                                 ++DH ++ + ++ DGI+P+N G GY+ R ++RRA+   
Sbjct: 306 ERAGLSIREARELLGREAALYTLLDHTKTIALMLGDGIVPSNTGEGYLARLVIRRALRTL 365

Query: 313 RLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
           R LG     +  L+       G   YP L+     I   +R E+ER+ KTL+RG   L  
Sbjct: 366 RRLGADIE-LAVLVERQARYWGADYYPRLLSHLDYILRVVRLEEERYSKTLERG---LRE 421

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           V   L + + L+ D    LYD+HG+P D++ +     G+      +F   + ++   + A
Sbjct: 422 VTKLLKRKKKLSIDDLITLYDSHGVPPDMVAEAASKLGVNVDVPHNFYALVAKKHGASGA 481

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            +  +                     +  D+   ++     R++  + P           
Sbjct: 482 VAREVEEKPK----------------LPRDIEEWARGFPATRRLFHENPYAR-------- 517

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                   E     +  +   V+ D T FY   GGQL DTG     G   ++  V+K   
Sbjct: 518 --------EFTANLLGVRGSHVILDATLFYPTGGGQLHDTGVLRLCGEEYRVLRVEKV-- 567

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G  V H +       +       ID+  R +L  +H+A H+L  A   +LG HV Q G+ 
Sbjct: 568 GDVVVHVLDREPSCSSG-EAWGRIDWDRRYRLMRHHTAVHVLLGAARRVLGDHVWQAGAE 626

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            TP+  R D+TH +  +  E++ IE+  N  I   + V    ++R  A       +   G
Sbjct: 627 KTPEKARLDITHYELPSREEIRKIEELANSAILARIHVDIEEIDRNTAEKLYGFRIYQGG 686

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                R+R+V +     G      C GTHV++T EI  + IV+   ++ G+ R E + G 
Sbjct: 687 VPMTPRLRIVRI-----GDWDVEACFGTHVANTAEIGAIKIVNVEKLQDGVVRFEIVAGS 741

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-----LQLNVE 784
               +    ++KL ++AS +   +G  V RVE++ EE ++ +   ++ +     + +   
Sbjct: 742 EVARYAASLEDKLDTIASIVGGGRGEAVKRVEKLAEELKEAKRQVSRLRSFLADMLVKSV 801

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             +   I  V          D    + VM  L ++    I + V    E     +   ++
Sbjct: 802 KATAKSIDGVKVYVMTEELPDENIYREVMLKLSREEPDSITIAVIRRGEDLLMEIGAGSK 861

Query: 845 DLLDRFNAVDLARLSAKVLGGGG--GGGRP 872
                   VDL R  AK L   G  GGG+P
Sbjct: 862 AA----KRVDL-RAVAKQLASKGLRGGGKP 886


>gi|328947373|ref|YP_004364710.1| alanyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447697|gb|AEB13413.1| alanyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 605

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/519 (33%), Positives = 282/519 (54%), Gaps = 23/519 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R+ ++EFF+   H  +   SLIP NDP+++FT +GM P      G++ P    +
Sbjct: 1   MTANELRSKYIEFFKSKNHVEISGQSLIPENDPSVLFTTAGMHPLVPYLLGEKHPAGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QKC+R G    D+D VG    H T FEMLGN+S G YFK+ +I  +++ LT  K   
Sbjct: 61  TDYQKCIRTG----DIDEVG-DPSHLTCFEMLGNWSLGDYFKKESIGFSYEFLTSPKWLG 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           LD R++ +TV+        DEEA   W K +G+  DKI  +  +DN+W+   TGPCGP +
Sbjct: 116 LDPRKISVTVFAGDDNAPRDEEAATYW-KENGMPEDKIAYLPASDNWWAAGPTGPCGPDT 174

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EIF+  GE +P        + E ++EIWN VFMQ+ + +++    LPK ++DTGMGLER 
Sbjct: 175 EIFYWVGEGLPPAGSNKGTDSENWMEIWNNVFMQYNRVDEKTLVPLPKKNVDTGMGLERT 234

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--G 289
             +LQ KT+ Y  ++F+ +I   E+++  KY  +     + R+I DH RS+ F++ D  G
Sbjct: 235 NCILQGKTSVYLTEVFQPIIAKIEELSSYKYGTDEEKDRSVRIIADHSRSAVFILGDQKG 294

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N G GYVLRR++RRA+ +   LG  +  +  +  A+      AYPEL Q K  I  
Sbjct: 295 VSPSNVGAGYVLRRLIRRAVRHGMKLGIEKNFLADIAQAVIENFKCAYPELEQNKEKIFT 354

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L +E+ +F  TL +G      +L +L K+  + ++G +AF+LYDT G PL++ Q++   
Sbjct: 355 ELSAEENKFRDTLRKGEAEFQKLLPNLMKNPKKEISGKIAFRLYDTFGFPLELTQELGAE 414

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR--G 465
            G   +D+  F +A  + +  ++    G   G   +   +  + + AT  +   L+   G
Sbjct: 415 NGFT-VDVEGFKEAERKHQEASKTQDAGAAKGGLAEQSDTTTKYHTATHLLQQALVNVLG 473

Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
            K  ++   +  ++   D T       + I +  +IV E
Sbjct: 474 DKVAQKGSNITNERMRFDFTFDRPMTKEEIQKVEDIVNE 512



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/144 (42%), Positives = 85/144 (59%), Gaps = 1/144 (0%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+ATHLL  AL  +LG  V+Q GS IT + +RFD T  +P+T  E++ +ED VN+ 
Sbjct: 454 TTKYHTATHLLQQALVNVLGDKVAQKGSNITNERMRFDFTFDRPMTKEEIQKVEDIVNEQ 513

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I ++LPV   +M  E A A GA AL   KY + V+V ++  +D    S  +CGG HV  T
Sbjct: 514 IKKDLPVTMEVMPLEKATAEGARALFTNKYGEDVKVYTIGEKDN-WFSKEVCGGPHVQHT 572

Query: 703 GEIMLLYIVSESSIRAGIRRIEAI 726
            +I    I  E S  AG+RRI A+
Sbjct: 573 AQIGEFKIQKEQSSSAGVRRIRAV 596


>gi|227872332|ref|ZP_03990686.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
 gi|227841815|gb|EEJ52091.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
          Length = 536

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/559 (33%), Positives = 293/559 (52%), Gaps = 32/559 (5%)

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403
           +I   +  E++RF KT+D GL +L G+   L K+  ++L+G+ AF+LYDT+G PLD+ ++
Sbjct: 1   MILRVISEEEDRFNKTIDNGLAILQGLKEDLQKNGEKLLSGEDAFRLYDTYGFPLDLTKE 60

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           IL   G+  +D  +F QA++ QR  ARA          + ++ +L+     T+F+GY+ L
Sbjct: 61  ILEDSGIT-VDEEAFQQAMKVQRETARAARKSTNYMGRDDVYQNLEASL-QTEFVGYEQL 118

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +     +                      + EI     +G +  V+ D++PFY  
Sbjct: 119 ECEGKITALVYLADNG-----------------DEDEIRPSVEAGNRAAVITDRSPFYGT 161

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ GD G          + +      G   H   VE+G      S+ L +D + R   
Sbjct: 162 MGGQQGDQGKICSGTSVFIVEETIHLQGGKLAHLGTVEQGGFSVGDSVRLVVDAKKRALT 221

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + NH+ATHLL  AL   LGSHV Q G+      LRFD TH   +T  EL+ +E+ VN+ I
Sbjct: 222 ARNHTATHLLQKALKETLGSHVEQAGAYYDDKRLRFDFTHFTALTKEELEKVENLVNEEI 281

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A+   V+TR M  E+A  SGA AL G KY D VRVVSV     G  S  LCGGTHV ++ 
Sbjct: 282 ARADVVLTREMPIEEAKKSGATALFGEKYGDTVRVVSV-----GDFSIELCGGTHVENSS 336

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I    I+SE  + AG+RRIEAIT Q    +   ++E LKSL+  LK    +++ RVE +
Sbjct: 337 SIQAFKILSEQGVAAGVRRIEAITSQNLFDYFHHEEELLKSLSGKLKADPEHLLARVESL 396

Query: 764 WEEYRK--LQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            +E ++   Q    K KL    VEDL+  +  D + ++  I  +D   L+++ D+L+ K 
Sbjct: 397 EKELKESRSQCEQLKAKLANAEVEDLAVVEYKDCSLIATNIPGMDRNALRNLGDSLKDKH 456

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           ++  I+L  + ++ K  ++   ++  +    +A +L +  A +LGGGGG G+P MAQ+GG
Sbjct: 457 KNAFILLASV-EDGKPILMATASDGAVKLGAHAGNLIKEIAPILGGGGG-GKPQMAQAGG 514

Query: 880 PNGNKADQAIAGVASFLKK 898
            +  K ++A+      +KK
Sbjct: 515 KDSAKLEEALKQSLESMKK 533


>gi|254167730|ref|ZP_04874580.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289597120|ref|YP_003483816.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623258|gb|EDY35823.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|289534907|gb|ADD09254.1| alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 882

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 215/953 (22%), Positives = 375/953 (39%), Gaps = 190/953 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V S+R +F+EFF++NGHE +    ++      +   N+ +  F+   T G   P    +
Sbjct: 58  TVESMRRSFIEFFKRNGHEEIKRYPVVARWRDDVFLVNASIYDFQPHVTSGLAPPPANPL 117

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q C+R      D+D+VG+T RH T FEM+ + +F       Y+K+  ++ A  L+  
Sbjct: 118 VISQPCIRMV----DVDSVGKTGRHLTGFEMMAHHAFNYPDNPIYWKDETVEYALKLI-- 171

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
                                   +++ G   + +      +  W     G  G   E+ 
Sbjct: 172 ------------------------EELGGEPDNVV----FKEKPWIGG--GNAGASFEVI 201

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
           +                    +E+  LVFM  ++ +  +          +P   +DTG G
Sbjct: 202 Y------------------GGLELATLVFMNLKEDDNGDIELNGTRYSEMPVKVVDTGYG 243

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR---------------- 273
           LER     +     YD  ++  +I   E   G+          R                
Sbjct: 244 LERFVWASKGTPTIYDA-IYPEMISMLEDRIGISRNDRKNEILRQFALLSPRIEIENENE 302

Query: 274 ---------------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
                                       +VD+ RS +F++ DGI+P+N   GY+ R ++R
Sbjct: 303 LINEVLKATRASMKEYKEFILPLQKIYAVVDYTRSLAFMLTDGIVPSNVQAGYLARLLIR 362

Query: 307 RAMCYARLLGYTEPLM-MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365
           R +     L    P+M   L+                   ++ E L  E+ER+ KTL +G
Sbjct: 363 RTLKLLDDL--KNPVMIGELVKMHIERFSDIMD--SSMLSIVLEELEIEEERYRKTLSKG 418

Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425
           + ++     H+ K+  +  D     YD+HGL  +I+ ++  + G+      +F+  + ++
Sbjct: 419 MDIVKR---HIKKNGKITTDDLILFYDSHGLLPEIVANVAESMGIRVDIPDNFHGLVAKR 475

Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485
                       S   +K     +     T+ + Y+     +F                 
Sbjct: 476 HE----------SVARKKKKEKKQYNLPPTRKLYYENPYLREFEAN-------------- 511

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
                    +   G            EVV D T FY E GGQ  D G  I DG   ++ D
Sbjct: 512 --------VVYSNGR-----------EVVLDATAFYPEGGGQPADRGKIICDGREYEVVD 552

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           VQK    + VH   ++ G +     +   +D++ R +L  NH+A H+L  A   +LG HV
Sbjct: 553 VQK-FGDVVVHF--LKDGHIEKGCKIKGILDWERRERLMRNHTAEHVLLAACRRVLGKHV 609

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
            Q+G+       RFD+ H KPI   E+K IE+    II   +PV  + MNR +A      
Sbjct: 610 WQHGTQKDVKECRFDIAHYKPIGREEIKRIEEEGMRIITSCVPVDAKFMNRTEAEKKHGF 669

Query: 666 ALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            L   G      +RVV +     G      CGGTHV++TGEI  L I+    I+ G+ RI
Sbjct: 670 VLYEGGIPPGKEIRVVRI-----GDFDVEACGGTHVNNTGEIGFLKILRTERIQDGVSRI 724

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
              +G  A  +   +++ L + AS L V    +    +  ++E+++ + I  K  L+ + 
Sbjct: 725 IYTSGLSALEYTQEREDILNNSASVLGVQPEKLPLAAKRFFDEWKEQRKIIEK--LKRSR 782

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            +    ++A    ++ ++  +D K L  +   L   ++ G+++      E  + V     
Sbjct: 783 MESIKKELASQKAVAEMLP-LDMKALSILARELMSSVERGVLI-----GEDGSFVAFG-- 834

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             L  +  A+++AR     +  G  GG+   AQ  G N ++ ++A+      L
Sbjct: 835 --LEAKRIALEIAR-----VMHGKAGGKESFAQGKG-NKDRIEEALNTARKLL 879


>gi|530410|emb|CAA83717.1| Ala-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 411

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 163/415 (39%), Positives = 245/415 (59%), Gaps = 28/415 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF    H  L   SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   STNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT    FD+
Sbjct: 65  NSQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITV++ED EA+ +WK +  +  D I R++   NFW + + GPCGP +EIF+D+G
Sbjct: 121 DKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIFYDRG 179

Query: 181 ECIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           E       G        E +RYIE+WN+VF QF          LP+ +IDTG GLER A+
Sbjct: 180 EIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFAS 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSS 282
           + Q    N++ D+F   I+  EQ+T    KY  +N  N            +VI DH+R++
Sbjct: 240 IFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRAT 299

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342
            F I+DG+ P N+ RGY++RR++RR+  +   LG  +  +  L+ ++   M   YP L+ 
Sbjct: 300 VFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLVD 359

Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397
            K L+E+T++ E+E+F KTL +G  LL+ ++        ++   A  L++++G P
Sbjct: 360 KKSLVEQTIKDEEEKFLKTLSKGYDLLENII---KTKNTVSDKDALLLFESYGFP 411


>gi|325971945|ref|YP_004248136.1| alanyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027183|gb|ADY13942.1| alanyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 598

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 161/520 (30%), Positives = 269/520 (51%), Gaps = 22/520 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + +R  F++FF    H  +  +SLIP NDPT++FT +GM P      G + P  + +T
Sbjct: 6   TANELRQKFIDFFVSKDHVQISGASLIPENDPTVLFTTAGMHPLVPYILGSDHPSGKRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R G    D++ VG    H TFFEMLGN+S G YFK+ AI  +++ LT   +LD 
Sbjct: 66  DYQKCIRTG----DIEAVG-DPHHLTFFEMLGNWSLGDYFKKEAIAYSFEFLTAWLNLDI 120

Query: 123 RRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEI 175
            +L +TV+  DE      EA + W+   G+  ++I  +   DN+W    ETGPCGP SE+
Sbjct: 121 SQLSVTVFAGDELVARDDEAAQTWESF-GIPRERIYFLPREDNWWGPAGETGPCGPDSEM 179

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F D G    G          +Y EIWN VFM +++ +      + +  +DTGMG+ER   
Sbjct: 180 FIDTGRPSCGPDCRPGCSCGKYFEIWNDVFMGYKKNSDGTYEEMSRKCVDTGMGIERTIA 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD--GIL 291
           +LQ K + Y+ ++F  +I   E ++   Y  N  ++   R++ DH+R+S F++ D  G+ 
Sbjct: 240 ILQGKKSVYETEVFAPIIAGIENLSQKHYGDNEDIDISIRILADHIRTSVFILGDQRGVA 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N G+GY+LRR++RRA+ +   LG     +  L   +    G  YPEL++ +  + + L
Sbjct: 300 PSNVGQGYILRRLIRRAVRHGHKLGIEGAFLGDLALIVLELYGKPYPELVENREFVLKEL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
             E+ +F +TL +G    + +L +L  G    ++G  AFKLYDT+G P+++ +++     
Sbjct: 360 AQEEAKFSETLAKGEREFEKMLPNLLKGNSRQISGRTAFKLYDTYGYPIELTKELAAEHD 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY--DLLRGSK 467
              +D   F +A E+ +  +R+ S     G            + AT  +      + G  
Sbjct: 420 FT-VDEAGFKEAFEKHQEISRSGSEQQFKGGLADHSDKTTALHTATHMLHQALRTVLGEH 478

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
             ++   +  ++   D T+      + I +  ++V EA+ 
Sbjct: 479 VGQKGSNITIERLRFDFTHHSPMSAEEIQKVEDMVNEAID 518



 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATH+LH AL T+LG HV Q GS IT + LRFD TH  P+++ E++ +ED VN+ I +N
Sbjct: 461 HTATHMLHQALRTVLGEHVGQKGSNITIERLRFDFTHHSPMSAEEIQKVEDMVNEAIDRN 520

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V    M  ++A A GA A   +KY ++V+V S+     G +S  +CGG HV +T ++ 
Sbjct: 521 LAVKCETMTLDEAKAQGAIAFFDSKYGEQVKVYSI-----GDYSKEVCGGPHVENTSQMG 575

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I+ E S  AG+RRI+AI
Sbjct: 576 HFKILKEQSSSAGVRRIKAI 595


>gi|312601159|gb|ADQ90414.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 168]
          Length = 743

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 208/769 (27%), Positives = 353/769 (45%), Gaps = 83/769 (10%)

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI---PGGLPGSSEEGERYIEI 200
            G S +K+I+ +   NFW + + GPCGPCSEI+FD+G         L  +  E +R+IEI
Sbjct: 1   MGFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFDSRGSELIKNEIENDRFIEI 59

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WN+VF +F    +Q    L   +IDTG G ER+ ++LQ+   NYD DLF  +I   E+ T
Sbjct: 60  WNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGPTNYDTDLFLPIIAEIEKST 119

Query: 261 GMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
             +Y+  N             + R+I DH+R+ +  I DG+ P+N  RGY++RR++RRA 
Sbjct: 120 VFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGVQPSNLHRGYIIRRLIRRAY 179

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
              + LG + P +  L+  +   +   +         I + + +E+E F KTL+ G  LL
Sbjct: 180 WNGKKLGISHPFLYKLVEIVGKTLDYRF-----DIPAISKIILNEEENFAKTLEIGYNLL 234

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           +  L  + K++I      FKL++T+G P+++ ++IL  + +        +Q +E Q   +
Sbjct: 235 ESQL-KINKNQIKPV-TVFKLFETYGFPVELTKEILAEKNI----DFDLSQLVEFQEKHS 288

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           +       +G  + I    + K   + FIGY                           + 
Sbjct: 289 QISRAKKTTGMQKVINSLTQIKAKISDFIGYHTH-----------------------HIE 325

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           + +  +  + E V E        V+F++TPFYA AGGQ  D G  + +   ++I DV K 
Sbjct: 326 TKISFLANKDEEVAETSGENLSYVIFEKTPFYATAGGQKHDQGWIVQNNSTIEILDVFKD 385

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
                +H   V +G +     + L +D +NR  L  NHS THLL  +L    GS + Q G
Sbjct: 386 KFLNNIH---VFKGKIVKNQPVFLKLDTKNRLNLERNHSGTHLLFASLRQEFGSEIKQLG 442

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S    D L FD   ++  +  E+KS+E+ +N  I Q +     + N E+     A   L 
Sbjct: 443 SDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKRKYLVTNLEETQKLNAIMTLE 502

Query: 670 T-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +Y D   +  V ++     ++ LCGGTH+ +T  +    I+S  S  +GI RI A+T 
Sbjct: 503 ESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKFTILSCQSKGSGIYRIRAVTS 559

Query: 729 Q-RARSHLMGQ-DEKLKSLASF----------LKVSQGNVVGRVEEIWEEYRKLQ----- 771
             +    L G+  E L  +++             ++  N+V  +E+ ++  +K++     
Sbjct: 560 WNKYFEFLKGKIQEILSKISALKNKIKKIEPNFGLNLPNLVD-LEQQFDYLKKIEDDLRI 618

Query: 772 --LIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLV 828
                 K +L++   +L  +KI ++   S  +   +    LK +    +++      +L 
Sbjct: 619 YYKKLLKSQLRIAKSELDANKIIEIGKFSFYLDFNLPLHNLKQIAATWREQNPRISFILG 678

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                     LI+V+  +L    A +        +  G GGG   +AQ 
Sbjct: 679 ANLVNN--EFLIIVSSAIL----ASNQILEKIFEIFTGSGGGNYKIAQG 721


>gi|254574770|pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain In Lysine-Methylated Form
 gi|254574771|pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
           Oligomerization Domain In Lysine-Methylated Form
          Length = 752

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 175/796 (21%), Positives = 308/796 (38%), Gaps = 170/796 (21%)

Query: 3   NVSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVY 58
            +  +R  FL FF+ +    H  +    ++P     ++   + ++ F+     G+  P  
Sbjct: 58  TLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
             +   Q  +R      D+DNVG T RH T FEM+ + +F       Y+ +  ++LA++ 
Sbjct: 118 NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEF 173

Query: 114 LTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            TKE  +    +                             T  +N W+    G  GP  
Sbjct: 174 FTKELXMXPEDI-----------------------------TFKENPWAGG--GNAGPAF 202

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN------------KQERFILPK 221
           E+ +                  R +E+  LVFMQ+                 ++   +  
Sbjct: 203 EVLY------------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMET 244

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------- 271
             +DTG GLER+  + Q     YD  +  ++++    + G++     I+           
Sbjct: 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFD 303

Query: 272 ----------------------------------HRVIVDHLRSSSFLIADGILPANEGR 297
                                                I DH ++ +F++ADG++P+N   
Sbjct: 304 IEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXA 363

Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           GY+ R ++R+++ + R LG   P +  ++     E+   +PE  + + +I E +  E++ 
Sbjct: 364 GYLARLLIRKSIRHLRELGLEVP-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKX 422

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
           + +TL RG  L+   ++ L K  I  +  +     Y++HGL  +I+ +I    G+     
Sbjct: 423 YAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIP 482

Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475
            +F   + ++  R +           E + F L +    T+ + Y+              
Sbjct: 483 DNFYSMVAKEAERTKE------EKGEELVDFELLKDLPDTRRLYYEDP------------ 524

Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535
                         + V  ++                V+ D T FY E GGQ  DTG  I
Sbjct: 525 --------FMXEFDAXVLRVIXD-------------WVILDATAFYPEGGGQPYDTGVLI 563

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
            +G  + +T+VQ    G  + H + + G     M +   ID+  R Q   +H+ TH+L  
Sbjct: 564 VNGREVXVTNVQXV--GXVIIHXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMG 621

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           AL  +LG HV Q GS +T D  R D++H   I+  EL  IE   N I+ ++  V    + 
Sbjct: 622 ALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLP 681

Query: 656 REDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           R  A       L   G      +RVV +E            GGTH+ STG +  + I+  
Sbjct: 682 RTTAEQXYGFRLYQGGVVPGREIRVVXIE-----DWDVQAXGGTHLPSTGLVGPIXILRT 736

Query: 714 SSIRAGIRRIEAITGQ 729
             I+ G+ RI    G+
Sbjct: 737 ERIQDGVERIIFACGE 752


>gi|302339632|ref|YP_003804838.1| alanyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636817|gb|ADK82244.1| alanyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 597

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/472 (34%), Positives = 253/472 (53%), Gaps = 22/472 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   +R  ++EFF   GH  +   SLIP NDPT++FT +GM P      G+  P    +
Sbjct: 1   MNSDELRNKYIEFFVSKGHARITGQSLIPENDPTVLFTTAGMHPLVPYLLGEPHPAGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QKC+R G    D+D VG    H TFFEMLGN+S G YFKE AI ++++ LT  K   
Sbjct: 61  TDYQKCIRTG----DIDAVG-DPHHLTFFEMLGNWSLGDYFKEDAISMSFEFLTSPKWLG 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           +   +L +T +        DEE+  +W K  G+  D+I  +   DN+W    ETGPCGP 
Sbjct: 116 IPVEKLSVTCFAGDDEVPRDEESASVW-KRMGIPEDRIFFLGRGDNWWGPAGETGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +E+F D G    G          +Y E+WN VFMQ+ +Q       L +  +DTGMG+ER
Sbjct: 175 TEMFIDTGRDACGDDCRPGCPCGKYFEVWNDVFMQYNKQADGSFVPLERTCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD-- 288
              VLQ K + Y+ + F  LI   E+++G +Y  +  +  + R+I DH+R++ F++ D  
Sbjct: 235 TVAVLQGKRSVYETEAFTPLISGIERLSGKQYGKDEGDDTSIRIIADHVRTAVFILGDER 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GY+LRR++RRA+ +   LG     +  L   +    G  YPELI AK  + 
Sbjct: 295 GVKPSNLGQGYILRRLIRRAVRHGLKLGIDRAFLSELADIVFERYGLPYPELIAAKDFVR 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILC 406
           E L +E+ RF +TL +G    + +L +L K +  ++ G VAF+LYDT+G PL+I +++  
Sbjct: 355 EELTAEEARFSETLKKGEHEFEKLLPNLKKSKSGVIPGRVAFRLYDTYGFPLEITEELAA 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
              L  +D   F ++ E+ +  ++  +     G            + AT  +
Sbjct: 415 EHDLT-VDREGFEKSFEKHQELSKKGAEKSFKGGLADHSERTTALHTATHLL 465



 Score =  152 bits (383), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 18/298 (6%)

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           RA   GL  G        L +       + Y  L  +K    +     +    +      
Sbjct: 313 RAVRHGLKLGIDRAFLSELADIVFERYGLPYPELIAAKDFVREELTAEEARFSETLKKGE 372

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA-EAGGQLGDTGCAIGDGIRLQITDVQK 548
              + ++   +  +  V   +V      T  +  E   +L        D    +     K
Sbjct: 373 HEFEKLLPNLKKSKSGVIPGRVAFRLYDTYGFPLEITEELAAEHDLTVDREGFE-----K 427

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             E              +  ++     D+  R   +  H+ATHLLH AL  +LG HV Q 
Sbjct: 428 SFEKHQELSKKGAEKSFKGGLA-----DHSER--TTALHTATHLLHKALRMVLGEHVQQK 480

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           GS IT + LRFD  H + ++  E++ +E+ VN  I ++LPV   +M+ ++A A+GA A  
Sbjct: 481 GSNITTERLRFDFVHPEKMSDEEVRRVEEIVNQQIDRDLPVSMEMMSLDEARAAGALAFF 540

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            +KY ++V+V S+     G  S  +CGG HV  TG++    I  E S  AG+RRI A+
Sbjct: 541 ESKYGEQVKVYSI-----GDFSKEVCGGPHVEHTGQLGRFKITKEQSSSAGVRRIRAV 593


>gi|305663561|ref|YP_003859849.1| alanyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
 gi|304378130|gb|ADM27969.1| alanyl-tRNA synthetase [Ignisphaera aggregans DSM 17230]
          Length = 914

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 194/930 (20%), Positives = 367/930 (39%), Gaps = 161/930 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           +   +R  FL+FF+++GHE++    ++      L  T + +V F+   T G   P    +
Sbjct: 60  SYREVRDLFLKFFERHGHEIIEPRPVVARWREDLYLTIASIVVFQPHVTSGLVPPPANPL 119

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+D+VG T  RH T F M G+ +F       Y+ +  ++ A +   
Sbjct: 120 VIAQPCIRL----EDIDSVGYTLGRHMTNFIMGGHHAFNYPDKHIYWTDETVEYAREFFV 175

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E                           G+  ++I   T  +++W     G  GPC E+
Sbjct: 176 EEL--------------------------GIPEEEI---TFKESWWEGG--GNAGPCFEV 204

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFM + + ++     +P   +DTG G+ER+A 
Sbjct: 205 AV------------------GGLELATLVFMMY-RVSEGGYEEIPLKIVDTGYGIERIAW 245

Query: 236 VLQEKTNNY--------------------DIDLFKHLIQASEQVTGMKYEG--------- 266
            +Q+    +                    D D+   + + + ++    Y           
Sbjct: 246 FVQKTPTAFHAVYGSLLTDFHKKLNISEPDRDILYAVARRAARIDPSNYSSILAIYEDIS 305

Query: 267 --------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                          NI +   I+DH ++ + +++DGI+P+N G GY+ R ++RR++   
Sbjct: 306 RSMGVSVKEIEDQLKNIFDLYAILDHTKTIALMLSDGIVPSNSGEGYLARLVIRRSLRKL 365

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             L      +  L+       G  YP +I+ +  I E +R E++++     RG++     
Sbjct: 366 AKLNVDID-LSELVSMQLGYWGDMYPRMIRYRDTILEMVRLEEDKY-----RGVISKLST 419

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII-SFNQALEEQRSRARA 431
           ++    ++  + D    LYD+ G+P D++ + L  R    I++  +F   +  + SR + 
Sbjct: 420 IAPRYVNKSPSLDELVTLYDSQGIPPDLLAEELDKRFSYRINVPSNFYSIVASRHSRPKT 479

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                                   + +  D++       E R++  + P         + 
Sbjct: 480 VRE------------------YEKEELPRDVVERVSSFPETRRIFHEDP---YRRVFRAK 518

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  ++                +V D T FY E GGQLGD G    +G  + +   +K   
Sbjct: 519 VLGVIGD------------RYIVLDATAFYPEGGGQLGDRGILRVNGKTINVVSTKKIGN 566

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +      VE   + + M +   +D+  R +   +H+ATH+L  AL  +LG HV Q G+ 
Sbjct: 567 VVVHVVDSVEG--ISSGMEVDGEVDWGIRYRRMRHHTATHILLGALRRVLGDHVWQAGAE 624

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            T    R DVTH K  +  E++ IE   N ++ + + V    + R +A       L   G
Sbjct: 625 KTEFKARLDVTHYKMPSEDEIRRIEYLANRVVDEAIDVKIHYLPRNEAEKIYGFTLYQGG 684

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                 +RVV +   D        C GTHV +T E+  + I++   I  G+ R E +   
Sbjct: 685 VPMEPTIRVVEIPGWDA-----QACFGTHVRNTSEVGGIKIINIDRIADGVIRFEYVVAT 739

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVED 785
               +    ++KLKS+A  +  S  ++  R+E + +E    +++    +     QL    
Sbjct: 740 ALADYARSFEDKLKSMAKSVGSSVDDIDKRIETLVKEMNNYRMLIKMYRNEYIDQLVKRA 799

Query: 786 LSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVT 843
           +    +  D+      IS  D + +K  +  ++   Q   +I    + ++ K  + I + 
Sbjct: 800 IETQDVYNDIKLYIARISINDRELIKEFL--IKSTTQEPRLIATALLEEQGKTYIEISLG 857

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
                + +A  +     + +    GG + H
Sbjct: 858 RIASQKIDAKQIVNELTRYIQTKAGGKKDH 887


>gi|257456350|ref|ZP_05621547.1| alanyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257446436|gb|EEV21482.1| alanyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 600

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/519 (32%), Positives = 276/519 (53%), Gaps = 30/519 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ ++ FF+   H  +   S+IP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TADELRSKYIAFFKSKNHTEISGKSVIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QKC+R G    D+D VG    H TFFEMLGN+S G YFK+ AI  +++ LT  +  D+
Sbjct: 66  DYQKCIRTG----DIDAVG-DASHLTFFEMLGNWSLGDYFKKEAIGYSFEFLTSPQYLDI 120

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCS 173
               L +TV+  D+      E+ ++W+K+ G+  ++I  +   DN+W    ETGPCGP +
Sbjct: 121 PIDLLSVTVFAGDDKVPRDTESAEIWEKL-GIPKERIHFLPREDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+F D G+   G          +Y+EIWN VFMQ+ ++       L +  +DTGMG+ER 
Sbjct: 180 EMFIDTGKPACGHECRPGCSCGKYVEIWNDVFMQYRKEQDGSYHTLERHCVDTGMGIERT 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--G 289
             +LQ K + Y+ ++F  LI A E++TG +Y  +    V+ R+I DH+R+++ ++ D   
Sbjct: 240 VAMLQGKKSVYETEIFTPLIAAIEKITGYQYGSDAEKDVSVRIICDHIRAATVILGDPKA 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           ++P+N G GYVLRRI+RRA+ + R LG     +      +  +   AYPEL   ++ I  
Sbjct: 300 VVPSNVGAGYVLRRIIRRAVRHGRKLGIEGTFLAIPAKVVIEQYKGAYPELKDKEVTITA 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L +E++RF +TL +G    + +  +L K+  +I+ G +AFKLYDT+G P+++ +++   
Sbjct: 360 ELEAEEKRFLETLKKGEAEYEKMKPNLLKNPKKIIPGRLAFKLYDTYGFPIELTEELARE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF--------IG 459
            GL  +D   F +A ++ +  +RA S  +  G            + AT          +G
Sbjct: 420 SGLT-VDRAEFEEAFKKHQELSRAGSEQIFKGGLADHSEQTTAYHTATHLLHKALRMVLG 478

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
             + +    +  +R       P  +T    + V+ IV +
Sbjct: 479 DHVEQKGSNITAERLRFDFSHPQPMTAEEKAEVERIVNE 517



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD +H +P+T+ E   +E  VN+ I  +
Sbjct: 463 HTATHLLHKALRMVLGDHVEQKGSNITAERLRFDFSHPQPMTAEEKAEVERIVNEQIQAD 522

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   IM  E+A  +GA AL G KY D V+V S+     G  S  +CGG HV  TG + 
Sbjct: 523 LPVTMEIMPLEEAKRAGAMALFGEKYEDTVKVYSI-----GNFSKEVCGGPHVEHTGVLG 577

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  AGIRRI A+
Sbjct: 578 KFSIQKEQSSSAGIRRIRAV 597


>gi|325474209|gb|EGC77397.1| alanyl-tRNA synthetase [Treponema denticola F0402]
          Length = 600

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 168/520 (32%), Positives = 279/520 (53%), Gaps = 30/520 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            +  +R+ +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TIDELRSKYIDFFKSKGHVEISGRSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
            VQKCVR G    D+D+VG    H TFFEMLGN+S G YFK+ +I  +++ LT  K   +
Sbjct: 66  DVQKCVRTG----DIDDVG-DASHLTFFEMLGNWSLGDYFKKESIAYSFEFLTDEKYLGI 120

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCS 173
              +L  TV++       D+E+  +W+ + G+S D+I  +   DN+W    ETGPCGP +
Sbjct: 121 PIDKLSFTVFEGNKDAPRDDESASIWESL-GVSKDRIFFLPKEDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EIF D G+   G          +Y+EIWN VFMQ+ +        L +  +DTGMG+ER 
Sbjct: 180 EIFIDTGKPACGSNCRPGCNCGKYVEIWNNVFMQYHKNMDGSYSPLKRKCVDTGMGVERT 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG-- 289
             +LQ K + Y+ + F  +I++ E ++G+KY  N     + R+I DH+R++ F++ D   
Sbjct: 240 VAMLQGKPSVYNTEAFTSIIKSIEDISGVKYGDNEKTDTSIRIIADHVRTACFILGDPKT 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+N G GYVLRR++RRA+ + + LG     +     A+  +    Y EL + + LI  
Sbjct: 300 TLPSNIGAGYVLRRLIRRAVRHGKKLGIDGNFLSVPASAVIAQNAGFYTELKENETLILT 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L++E+++F +TL +G    + +L +L K+  +I+ G +AFKLYDT+G P+++ +++   
Sbjct: 360 ELKAEEDKFLETLKKGEAEFEKMLPNLLKNPKKIIPGRMAFKLYDTYGFPIELTEELASE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF--------IG 459
            GL  ++   F++A ++ +  +RA S  +  G            + AT          +G
Sbjct: 420 SGLT-VNREEFDEAFKKHQELSRAGSEQVFKGGLADHSEQTTAYHTATHLLHKALRMVLG 478

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             + +    +  +R       P  +T      V+ +V + 
Sbjct: 479 DHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNEA 518



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/145 (45%), Positives = 86/145 (59%), Gaps = 5/145 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H +P+T AE K +E  VN+
Sbjct: 458 QTTAYHTATHLLHKALRMVLGDHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNE 517

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   +M  E+A   GA AL G KY D V+V  +     G  S+ +CGG HV  
Sbjct: 518 AIKADLPVTMEVMPLEEAKKIGAMALFGEKYEDVVKVYKI-----GDFSTEVCGGPHVER 572

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAI 726
           TG +    I  E S  +G+RRI A+
Sbjct: 573 TGSLGRFCIKKEQSSSSGVRRIRAV 597


>gi|42527166|ref|NP_972264.1| alanyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|48428513|sp|P61708|SYA_TREDE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|41817590|gb|AAS12175.1| alanyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 600

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/520 (32%), Positives = 279/520 (53%), Gaps = 30/520 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            +  +R+ +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TIDELRSKYIDFFKSKGHVEISGRSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
            VQKCVR G    D+D+VG    H TFFEMLGN+S G YFK+ +I  +++ LT  K   +
Sbjct: 66  DVQKCVRTG----DIDDVG-DASHLTFFEMLGNWSLGDYFKKESIAYSFEFLTDEKYLGI 120

Query: 121 DQRRLYITVYDE------DEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCS 173
              +L  TV++       DEE+  +W+ + G+S D+I  +   DN+W    ETGPCGP +
Sbjct: 121 PIDKLSFTVFEGNEDAPRDEESASIWESL-GVSKDRIFFLPKEDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           EIF D G+   G          +Y+EIWN VFMQ+ +        L +  +DTGMG+ER 
Sbjct: 180 EIFIDTGKPACGSNCRPGCNCGKYVEIWNNVFMQYHKNMDGSYSPLKRKCVDTGMGVERT 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG-- 289
             +LQ K + Y+ + F  +I++ E ++G+KY  N     + R+I DH+R++ F++ D   
Sbjct: 240 VAMLQGKPSVYNTEAFTSIIKSIEDISGVKYGDNEKTDTSIRIIADHVRTACFILGDPKT 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+N G GYVLRR++RRA+ + + LG     +     A+  +    Y EL + + LI  
Sbjct: 300 TLPSNIGAGYVLRRLIRRAVRHGKKLGIDGNFLSVPASAVIAQNAGFYTELKENETLILT 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
            L++E+++F +TL +G    + +L +L K+  +I+ G +AFKLYDT+G P+++ +++   
Sbjct: 360 ELKAEEDKFLETLKKGEAEFEKMLPNLLKNPKKIIPGRMAFKLYDTYGFPIELTEELASE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF--------IG 459
            GL  ++   F++A ++ +  +RA S  +  G            + AT          +G
Sbjct: 420 SGLT-VNREEFDEAFKKHQELSRAGSEQVFKGGLADHSEQTTAYHTATHLLHKALRMVLG 478

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499
             + +    +  +R       P  +T      V+ +V + 
Sbjct: 479 DHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNEA 518



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/145 (45%), Positives = 86/145 (59%), Gaps = 5/145 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ATHLLH AL  +LG HV Q GS IT + LRFD +H +P+T AE K +E  VN+
Sbjct: 458 QTTAYHTATHLLHKALRMVLGDHVQQKGSNITAERLRFDFSHPEPMTEAEKKEVERLVNE 517

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   +M  E+A   GA AL G KY D V+V  +     G  S+ +CGG HV  
Sbjct: 518 AIKADLPVTMEVMPLEEAKKIGAMALFGEKYEDVVKVYKI-----GDFSTEVCGGPHVER 572

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAI 726
           TG +    I  E S  +G+RRI A+
Sbjct: 573 TGSLGRFCIKKEQSSSSGVRRIRAV 597


>gi|198416598|ref|XP_002127690.1| PREDICTED: similar to LOC443692 protein [Ciona intestinalis]
          Length = 809

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 213/865 (24%), Positives = 382/865 (44%), Gaps = 130/865 (15%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
           +   +R  F+ FF++  H+ +PSS +    DP+L+F N+GM  FK +  G++K       
Sbjct: 28  SSKELRDIFINFFERRDHKFIPSSKVYTPEDPSLLFVNAGMNQFKPVLLGEQKKKSLFTN 87

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDL++VG    HHTFFEMLG++SFG YFKE A ++AW LLT+ 
Sbjct: 88  VRRAVNSQKCIRAGGKHNDLNDVGHDLTHHTFFEMLGSWSFGDYFKEDACKMAWLLLTEV 147

Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
            +L   RLY+T +          D +  ++WK I G++ ++I+   + DNFW M ETGPC
Sbjct: 148 LNLSPDRLYVTYFNGCPLNNLKPDYDTREIWKSI-GVNHNRILPFGSTDNFWEMGETGPC 206

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPC+EI +D+           ++     +EIWN+VFMQF + +  +   L    +D+GMG
Sbjct: 207 GPCTEIHYDRIGNRH-VPEQVNKSLSDVVEIWNIVFMQFNKVSISQLEPLNVCHVDSGMG 265

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVIVDHLR 280
           LER+  V+Q+K +NYD DLF  ++ A E+++ +                  +R+I DH+R
Sbjct: 266 LERITAVMQQKQSNYDTDLFVPILSAIEEISKVGPYKGRVGEEDTNGIDAAYRMISDHIR 325

Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339
             +  I+DGI P  +GR  +LR+++RRA+      L    P +  LLP +   +G A+PE
Sbjct: 326 MLTVAISDGIYPGPKGRELILRKVLRRAVLAGIEKLQTPRPFLYTLLPTVVESLGCAFPE 385

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           +   +  + E ++  +  F +TLDRG +++   + +L  +E    +VA KL   +G PL+
Sbjct: 386 VELKQDEVMEVIKESEMAFYRTLDRGDLIVRKTIKNLAGNE-FPPEVAHKLRLQNGYPLN 444

Query: 400 IMQDILCAR----GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455
            M   L        +  +D      + ++Q S    +         E+   SL   +   
Sbjct: 445 RMLLFLSQEKLNFNMMAVD------SFKKQSSEKNLNKKSFSFLDNEEDRSSLIHSFLKQ 498

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE---AVSG--QK 510
           +F     +  +K + + +              VS+ +  IV    ++      + G  + 
Sbjct: 499 KFKPTVCVNSAKRLGDHQ---------FTIAPVSAKLCGIVNDEGVMHTELNLLKGNVEN 549

Query: 511 VEVVFDQT----PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI-----VE 561
           + ++ D+T    PF+    G+  + G     G    + +V    +G F+H        V+
Sbjct: 550 LFLLLDKTNLSQPFH----GKFSNIGTIYLHGRAFPVVNV-INLDGWFLHEITTTDLNVD 604

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L +   + +  + +    L   HSA  +L      I+ +H       ++ D L  ++
Sbjct: 605 FLQLCSGNLVTVEQNEEYELTLIRTHSAKQMLKDTCRKIIPNHA-ILKLKVSLDQL--NI 661

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
             +  +    ++ +E+                                T+  D  R +  
Sbjct: 662 ELAGNVEDELIRQLENQ-----------------------------FKTEGIDDRRTLD- 691

Query: 682 EYEDGGVHSSALCGGTH-VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                           H V +T  +M   I            +  + G++A + L     
Sbjct: 692 ----------------HVVGNTPGVMNFVITKCRRQGKAKTILTCVVGKKASNAL----- 730

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADVNFM 797
               L S +K    ++  + E I +E+   +++  K       LN  ++   +   +  +
Sbjct: 731 ---DLCSQIKSVVEDLKTQCENI-DEHTSAEVLIKKIGDATFALNNSEIPYQRKNSMREI 786

Query: 798 SHIISEVDSKELKSVMDALQKKIQS 822
              +S      + ++   +++K +S
Sbjct: 787 LRKLSG----RMNTMQKKIKRKKES 807


>gi|330837065|ref|YP_004411706.1| alanyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
 gi|329748968|gb|AEC02324.1| alanyl-tRNA synthetase [Spirochaeta coccoides DSM 17374]
          Length = 598

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 165/454 (36%), Positives = 253/454 (55%), Gaps = 20/454 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+EFF   GH  +P +SLIP NDPT++FT +GM P      G E P    + 
Sbjct: 6   TADDLRSKFIEFFVSKGHVQIPCASLIPENDPTVLFTTAGMHPLVPYIMGAEHPAGTRLV 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QKC+R G    D+D+VG    H TFFEMLGN+S G YFK+ +I  +++ LTK  D+D 
Sbjct: 66  DYQKCIRTG----DIDSVG-DPHHLTFFEMLGNWSLGDYFKKESIGFSFEFLTKVLDIDV 120

Query: 123 RRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEI 175
            RL +TV+        DEE+   W K+ G+  ++I  +   DN+W    ETGPCGP SEI
Sbjct: 121 ARLSVTVFVGDADVPRDEESAATW-KLLGIPEERIYYLPREDNWWGPAGETGPCGPDSEI 179

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           FFD                 RY EIWN VFM ++++       + +  +DTGMG+ER   
Sbjct: 180 FFDTRRQTNNPDSRPGSSDGRYFEIWNNVFMGYKKEADGSYGEMTRKCVDTGMGIERTIA 239

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD--GIL 291
           VLQ K + YD ++F+ +I A E ++G  Y  N  + ++ R+I DH+R+S F++ D  G+ 
Sbjct: 240 VLQGKQSVYDTEVFQPVIHAIEGLSGKTYGENEQDDISIRIIADHIRTSVFILGDQKGVA 299

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N G+GY+LRR++RRA+ + R LG     +  L   +    G  YPE+I+ K  +   L
Sbjct: 300 PSNVGQGYILRRLIRRAVRHGRKLGIEGKFLSGLASPVFELYGKPYPEIIENKKFVIAEL 359

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +E+E+F +TL +G    + V   + K     ++G VAF+LYDT+G P+++  ++    G
Sbjct: 360 DAEEEKFSETLAKGEKEFEKVRLGMEKGNSRQISGRVAFRLYDTYGFPIELTTELATEHG 419

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           +  +D   F +A ++ +  +RA +     G    
Sbjct: 420 MT-VDTEGFAEAFKKHQEISRAGAEQQFKGGLAD 452



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/140 (45%), Positives = 89/140 (63%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL T+LG+HV Q GS IT + LRFD TH +P+T  +++ +ED VN+ I +N
Sbjct: 461 HTATHLLHQALRTVLGTHVGQKGSNITVERLRFDFTHPEPMTKEQIQQVEDIVNEQIKRN 520

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L V  +    E+A   GA A   +KY + V V S+     G  S  +CGG HV+ TG++ 
Sbjct: 521 LTVTKKTETLEEAQKEGAIAFFESKYGELVTVYSI-----GNFSKEVCGGPHVTHTGDMG 575

Query: 707 LLYIVSESSIRAGIRRIEAI 726
             +I+ E S  AG+RRI+A+
Sbjct: 576 HFHILKEQSSSAGVRRIKAV 595


>gi|320536417|ref|ZP_08036454.1| alanyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320146727|gb|EFW38306.1| alanyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 600

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/519 (32%), Positives = 279/519 (53%), Gaps = 30/519 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R  +++FF+  GH  +   SLIP NDPT++FT +GM P      G+  P    +T
Sbjct: 6   TADELRRKYIDFFKSKGHVEISGKSLIPDNDPTVLFTTAGMHPLVPYLMGEPHPSGTRLT 65

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QKC+R G    D+D VG    H TFFEMLGN+S G YFK+ AI+ +++ LT  K   +
Sbjct: 66  NYQKCIRTG----DIDEVG-DAAHLTFFEMLGNWSLGDYFKKEAIEYSFEFLTDKKYLGI 120

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCS 173
               L +TV+  DE      E+ + W+++ G+S ++I  +   DN+W    ETGPCGP +
Sbjct: 121 PIDLLSVTVFAGDEQVPKDTESAETWQRL-GISKERIYFLPRKDNWWGPAGETGPCGPDT 179

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E+F D G+   G          +YIEIWN VFMQ+ +        L +  +DTGMG+ER 
Sbjct: 180 EMFIDTGKDACGADCKPGCHCGKYIEIWNDVFMQYHKNKDGSYSELTRHCVDTGMGIERT 239

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIAD--G 289
             +LQ K + Y+ ++F  LIQ  E+++G  Y  N  + ++ R+I DH+R+++F+++D   
Sbjct: 240 VAMLQGKKSVYETEIFTPLIQTVERLSGKTYGQNEADAISIRIICDHVRAATFILSDPKS 299

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
           + P+N G GYVLRRI+R A+ + + LG     +      +  +   AYPEL + +  I  
Sbjct: 300 VAPSNVGAGYVLRRIIRSAVRHGKKLGIEGCFLSTPAKVVIGQYNGAYPELQEKETEIYA 359

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407
           +L +E+++F +TL +G    + +L +L K+  +I+ G +AFKLYDT+G P+++ +++   
Sbjct: 360 SLEAEEKKFLETLKKGETEYEKMLPNLLKNPKKIIPGRLAFKLYDTYGFPIELTEELARE 419

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF--------IG 459
            GL  ++   F++A ++ +  +RA S  +  G            + AT          +G
Sbjct: 420 SGL-QVNREEFDEAFKKHQELSRAGSEQIFKGGLADHSEQTTAYHTATHLLHKALRMVLG 478

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498
             + +    +  +R       P  +T    + V+ IV +
Sbjct: 479 DHVEQKGSNITAERLRFDFSHPKPMTPEEKAEVERIVNE 517



 Score =  157 bits (398), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 66/139 (47%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG HV Q GS IT + LRFD +H KP+T  E   +E  VN+ I  +
Sbjct: 463 HTATHLLHKALRMVLGDHVEQKGSNITAERLRFDFSHPKPMTPEEKAEVERIVNEQIQAD 522

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M+ ++A  SGA AL G KY D V+V S+     G  S  +CGG HV  TG++ 
Sbjct: 523 LPVSFEVMSLDEAKKSGAMALFGEKYEDSVKVYSI-----GSFSKEVCGGPHVEHTGQLG 577

Query: 707 LLYIVSESSIRAGIRRIEA 725
              I  E S  AG+RRI A
Sbjct: 578 HFVIKKEQSSSAGVRRIRA 596


>gi|229553796|ref|ZP_04442521.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|229312819|gb|EEN78792.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
          Length = 394

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/390 (42%), Positives = 237/390 (60%), Gaps = 22/390 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4   MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           T  QK +R     ND++ VG+T RH TFFEMLGNFS G YFK+  I  AW+LLT  K FD
Sbjct: 64  TNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFD 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            D +RLY+TVY +D+   +LW+K+ G++ D I+     DNFW + E GP GP SEIF+D+
Sbjct: 120 FDPKRLYVTVYPKDKGTKELWRKV-GVADDHIVEA--EDNFWDIGE-GPSGPDSEIFYDR 175

Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           G       E  P   PG   E  RY+EIWN+VF +            P  +IDTGMGLER
Sbjct: 176 GQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHLPDGRFVEQPHKNIDTGMGLER 233

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289
           +  V+Q     ++ DLF  +I+A+E++  G +Y     + V+ ++I DH R+ +F I DG
Sbjct: 234 LVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFAIGDG 293

Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349
            LP+NEGRGYVLRR++RRA+   + LG     +  L+P +   M S YP+++  +  I++
Sbjct: 294 ALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQPFIQK 353

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379
            + SE+ RF +TLD G+ LL+ +++ L + 
Sbjct: 354 VIESEEARFRQTLDAGVNLLNQIVAELKQK 383


>gi|170291158|ref|YP_001737974.1| alanyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|205830075|sp|B1L762|SYA_KORCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|170175238|gb|ACB08291.1| alanyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 895

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 209/920 (22%), Positives = 356/920 (38%), Gaps = 175/920 (19%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
            ++  +R  FL FF++ GH  +    +I      L  T++ +V F+   T G   P    
Sbjct: 53  KSLEEVREDFLRFFERRGHTRINRYPVIARWREDLFLTSASIVDFQPFITAGIVPPPANP 112

Query: 61  VTTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
           +T  Q C+R      D+D VG T  RH + FEM+ + +F       Y+ +R ++L  +  
Sbjct: 113 LTISQPCIRLK----DIDKVGPTMGRHLSIFEMMAHHAFNTKDKFVYWIDRTVELFHEYA 168

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T                             G+  ++I   T  +  W     G  GP  E
Sbjct: 169 TSVL--------------------------GIPEEEI---TYKEGIWEGG--GNAGPDLE 197

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
                   I GG           +EI  LVFMQ+ +        +    +DTG GLER+ 
Sbjct: 198 -------PIAGG-----------LEIATLVFMQY-RIENGSYVPMDTRVVDTGYGLERIT 238

Query: 235 TVLQEKTNNYDI------------------DL---------------------FKHLIQA 255
             L+     +                    DL                        L + 
Sbjct: 239 WFLRGDPTGFHAVYGALLHEFMDKLGVSEPDLSLLSEYSKVSSILRELEKGRSISSLRRE 298

Query: 256 SEQVTGMKYEG--NNIVNHRVI---VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
           +  + G+  E     I     +   +DH ++ SF+IADG++P+N   GY+ R ++RR++ 
Sbjct: 299 AALLIGVSEEELEEKIAPLEAVFSLLDHTKALSFMIADGLVPSNVNEGYLGRLLIRRSLR 358

Query: 311 YARLLGYTEPLMMHLLPALCTEMG-SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
               LG   P +  L            +PEL +A   I E +  E+ER+ + ++RG  ++
Sbjct: 359 ILNQLGSEVP-LSELAVRQAEYWSSKGFPELREAIDRIAEIVSIEEERYKEAVERGAKII 417

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
             ++   G+   L+ D    LYD+HGL  DI++ I        +D+      +   R  A
Sbjct: 418 SDLMREKGR---LSVDDLIMLYDSHGLSPDIVRRIAGD-----VDVPDNFFEMIAARHEA 469

Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489
           R           +++      +Y  T+ + Y      +F                     
Sbjct: 470 RKPEPPKVFERMDEL-----RRYPPTKLLYYQDPYLLEF--------------------E 504

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549
           + V   V               +++ D+T FY E GGQ  D G     GI +++   +K 
Sbjct: 505 ARVLGYVD-------------GKMILDRTAFYPEGGGQPSDIGSFEWRGIEVKVVGAEKH 551

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G  +H   VE  +      +   +D   R     +H+ATH++  A   +LGSHV Q G
Sbjct: 552 -GGWILH--SVEGDLPPAGEVVRARVDSWRRLNRMRHHTATHVILEAARRVLGSHVWQWG 608

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL- 668
           +    +  R D+TH K I+  EL+ IE   N+++ +N+PV T  + R DA       L  
Sbjct: 609 AQKGDEESRLDITHYKGISQEELRRIEMLANEVVMRNIPVRTLWLVRTDAERRYGFTLYQ 668

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G   +  +RVV +E       ++  CGGTHV  TGEI  + I     I+ G+ R+E   
Sbjct: 669 GGVVPDPVLRVVEIEG-----FNAQACGGTHVLRTGEIGPIKIWRARKIQDGVIRLEFSA 723

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A   ++   +K+K +A    +S+  +      + EE ++L+    +R++    E+ S
Sbjct: 724 GVPAVKRIIDYHQKIKDIAQSAGISEEEIDTFFRGMMEELKELRKE--RRRMMKEAEERS 781

Query: 788 CHKIADV-------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
             +  +              +  +   E   + D L        I+L+      +  + +
Sbjct: 782 IERALEAYESTGRHKLSIVRLESIGIDEGIKLADKLSS---DRRIVLLTKESGDRVELAL 838

Query: 841 VVTEDLLDRFNAVDLARLSA 860
           + T       +A  L R  +
Sbjct: 839 LATNYGEGEVDAGSLLRELS 858


>gi|291060374|gb|ADD73109.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 649

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/470 (33%), Positives = 251/470 (53%), Gaps = 22/470 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
              +R+ +L FF +  H ++   SL+P +DPT++FT +GM P      G+  P    +  
Sbjct: 51  ADQLRSRYLAFFSQKAHVVISGKSLVPEHDPTVLFTTAGMHPLVPYLMGEPHPAGTRLVN 110

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R G    D+D VG  N H TFFEMLGN+S G YFKE AI  +++ LT      + 
Sbjct: 111 AQKCLRTG----DIDAVG-DNSHLTFFEMLGNWSLGDYFKEEAIAFSFEFLTGAPWLGIS 165

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
             RL +TV+  DE      E+  +W+++ G++   I  +   DN+W    ETGPCGP +E
Sbjct: 166 PDRLSVTVFAGDEAVARDEESAAIWERL-GIARTHIHFLPRADNWWGPTGETGPCGPDTE 224

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IFFD G               +Y+EIWN VFMQ+ +        L +  +DTGMG+ER  
Sbjct: 225 IFFDTGVPPCSVSCRPGCSCGKYVEIWNDVFMQYRKDADGRYRPLERYCVDTGMGIERTV 284

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GI 290
            VLQ K + YD ++F  L++   Q+ G +Y  +G + V+ R++ DH+R+++F++ D   +
Sbjct: 285 AVLQGKRSVYDTEIFTPLLERIGQLCGKRYGCQGAHDVSMRIVCDHIRAATFILGDPVPV 344

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G GYVLRRI+RR++ + R LG     +  L   +  +  + YPEL +    I + 
Sbjct: 345 RPSNVGAGYVLRRIIRRSVRHGRKLGIDGEFLSSLARVVIGQYAAVYPELEEKATCIAQE 404

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L +E+ +F   L +G    + ++     G +  + G VAF+LYDT+G PL++ +++    
Sbjct: 405 LANEERKFLDALRKGEAEYERMIPKFLQGTEREIPGSVAFRLYDTYGFPLELTEELARES 464

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           GL  +D   F+ A +  ++ +R  +  +  G            + AT  +
Sbjct: 465 GLR-VDRAGFDTAFQAHQACSRIGAQRVFKGGLADHSAETTAYHTATHLL 513



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/140 (47%), Positives = 88/140 (62%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+HV Q GS IT + LRFD +H +P+++ E   +E  VN+ I  +
Sbjct: 507 HTATHLLHQALRVVLGTHVQQKGSNITAERLRFDFSHPRPMSAQEKVQVEQLVNEQIRAD 566

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M+ EDA+ SGA AL G KY   V+V S+     G  S  +CGG HV+ TG++ 
Sbjct: 567 LPVCCEVMSLEDAMNSGAVALFGEKYESTVKVYSI-----GTFSREVCGGPHVARTGQLG 621

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  AG+RRI AI
Sbjct: 622 RFSIQKEQSSAAGVRRIRAI 641


>gi|15640001|ref|NP_219454.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026240|ref|YP_001934012.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094390|sp|O83980|SYA_TREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|3323345|gb|AAC65968.1| alanyl-tRNA synthetase (alaS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018815|gb|ACD71433.1| alanyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 605

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 156/470 (33%), Positives = 251/470 (53%), Gaps = 22/470 (4%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
              +R+ +L FF +  H ++   SL+P +DPT++FT +GM P      G+  P    +  
Sbjct: 7   ADQLRSRYLAFFSQKAHVVISGKSLVPEHDPTVLFTTAGMHPLVPYLMGEPHPAGTRLVN 66

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121
            QKC+R G    D+D VG  N H TFFEMLGN+S G YFKE AI  +++ LT      + 
Sbjct: 67  AQKCLRTG----DIDAVG-DNSHLTFFEMLGNWSLGDYFKEEAIAFSFEFLTGAPWLGIS 121

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
             RL +TV+  DE      E+  +W+++ G++   I  +   DN+W    ETGPCGP +E
Sbjct: 122 PDRLSVTVFAGDEAVARDEESAAIWERL-GIARTHIHFLPRADNWWGPTGETGPCGPDTE 180

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IFFD G               +Y+EIWN VFMQ+ +        L +  +DTGMG+ER  
Sbjct: 181 IFFDTGVPPCSVSCRPGCSCGKYVEIWNDVFMQYRKDADGRYRPLERYCVDTGMGIERTV 240

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD--GI 290
            VLQ K + YD ++F  L++   Q+ G +Y  +G + V+ R++ DH+R+++F++ D   +
Sbjct: 241 AVLQGKRSVYDTEIFTPLLERIGQLCGKRYGCQGAHDVSMRIVCDHIRAATFILGDPVPV 300

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
            P+N G GYVLRRI+RR++ + R LG     +  L   +  +  + YPEL +    I + 
Sbjct: 301 RPSNVGAGYVLRRIIRRSVRHGRKLGIDGEFLSSLARVVIGQYAAVYPELEEKATCIAQE 360

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L +E+ +F   L +G    + ++     G +  + G VAF+LYDT+G PL++ +++    
Sbjct: 361 LANEERKFLDALRKGEAEYERMIPKFLQGTEREIPGSVAFRLYDTYGFPLELTEELARES 420

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           GL  +D   F+ A +  ++ +R  +  +  G            + AT  +
Sbjct: 421 GLR-VDRAGFDTAFQAHQACSRIGAQRVFKGGLADHSAETTAYHTATHLL 469



 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/140 (47%), Positives = 88/140 (62%), Gaps = 5/140 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ATHLLH AL  +LG+HV Q GS IT + LRFD +H +P+++ E   +E  VN+ I  +
Sbjct: 463 HTATHLLHQALRVVLGTHVQQKGSNITAERLRFDFSHPRPMSAQEKVQVEQLVNEQIRAD 522

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +M+ EDA+ SGA AL G KY   V+V S+     G  S  +CGG HV+ TG++ 
Sbjct: 523 LPVCCEVMSLEDAMNSGAVALFGEKYESTVKVYSI-----GTFSREVCGGPHVARTGQLG 577

Query: 707 LLYIVSESSIRAGIRRIEAI 726
              I  E S  AG+RRI AI
Sbjct: 578 RFSIQKEQSSAAGVRRIRAI 597


>gi|284799808|ref|ZP_06390350.1| alanine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284796867|gb|EFC52214.1| alanine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 624

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/526 (31%), Positives = 255/526 (48%), Gaps = 43/526 (8%)

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                ++ G+  FKLYDT+G P D+  D+    G+  +D   F + +E       A    
Sbjct: 132 ANSKLVIGGEHIFKLYDTYGFPYDLTADMARELGI-DLDEAGFEREME-------AQRAR 183

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
             +  + K    L  +   T+F GY   +                         S V A+
Sbjct: 184 ARAAQSFKANAQLPYEGQDTEFKGYSERQT-----------------------ESKVLAL 220

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            + GE V E   G +  VV D TPFYAE+GGQ+GD G       R ++ D QK    +F 
Sbjct: 221 YKDGEQVNELNEGDEGAVVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFG 280

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
              +   G L+   S+   +D + R     NHSATHL+H AL  +LG HV Q GS +T +
Sbjct: 281 QFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGEHVEQKGSLVTAE 340

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             RFD++H + +T+ E+  +E  VN+ I  N+ V   IM+ EDA  +GA  L G KY D 
Sbjct: 341 STRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSMEDAQKTGAMMLFGEKYGDE 400

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRV+ +     G  S+ LCGGTHVS TG+I L  I+SE  I AG+RRIEAITG  A    
Sbjct: 401 VRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWA 455

Query: 736 MGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKLQLN----VEDLSCHK 790
             Q+  +K + +  K   + +V+ +++      + L+   A+ K +L      + L   K
Sbjct: 456 QEQEHLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAK 515

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
                 +     E D+  L+ ++  L  K +  I++L  +  + K S+   V++ L  + 
Sbjct: 516 DLGSAKLVAAQIEADAAALREIVTDLTGKSEQAIVLLAAV-NDGKVSLCAGVSKPLTGKV 574

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A DL + +A+ + GG GGGRP +AQ+GG +  K    I  V  ++
Sbjct: 575 KAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDAEKLPAMIESVKDWV 619



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
           MG AYPEL + +  I E LR+E+ RFG+TL++G+ L + VL+ + 
Sbjct: 1   MGDAYPELKEKQTQIMEALRAEESRFGETLEKGMGLFNQVLNGMK 45


>gi|332180537|gb|AEE16225.1| alanyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 595

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/521 (31%), Positives = 278/521 (53%), Gaps = 26/521 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R+ ++EFF+   H  +   SLIP NDPT++FT +GM P      G+  P  + +
Sbjct: 1   MTANELRSKYIEFFKSKNHVEISGKSLIPENDPTVLFTTAGMHPLVPYLMGEPHPAGKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
              QKC+R G    D+++VG  + H TFFEMLGN+S G YFK+ +I  +++ LTK     
Sbjct: 61  VDYQKCIRTG----DIESVG-DSSHLTFFEMLGNWSLGDYFKQESIGFSFEFLTKPEYLH 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           +   +L +TV+        D+E+   W+++ G+  ++I  +  +DN+W    ETGPCGP 
Sbjct: 116 IPLEKLSVTVFAGDESVPRDDESAARWEQL-GIPRERIHFLPRSDNWWGPAGETGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G+              +YIEIWN VFMQ+ +        L    +DTGMG+ER
Sbjct: 175 TEIFIDTGKRACSENCRPGCGCGKYIEIWNNVFMQYNKDADGVYTKLAHPCVDTGMGVER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIAD-- 288
              +LQ K + Y+ ++F  LI   E++TG  Y  +     + R+I DH+R+++F++ D  
Sbjct: 235 TVAMLQGKKSVYETEVFTPLIAVIEKLTGKTYGTDEASDTSIRIICDHVRAATFILGDPK 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+LP+N G GYVLRRI+RRA+ + R LG     +      +      AYPE+   + LI 
Sbjct: 295 GVLPSNVGAGYVLRRIIRRAVRHGRKLGLDGEFLKEPAQTVIGMYRDAYPEVDAKRELIL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
             L+ E+++F +TL +G    D ++ +L K+  +++ G VAF+LYDT G P+++ +++  
Sbjct: 355 AELQREEQKFLETLKKGEAEFDKLVPNLLKNPAKVIPGRVAFRLYDTFGFPVELTEELAG 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR-- 464
             GL  ++   F+ A ++ +  +RA S  +  G        +  KY     + +  L+  
Sbjct: 415 EHGLT-VNREEFDAAYKKHQELSRAGSEQVFKGGLAD-HSEITTKYHTATHLLHKALKMV 472

Query: 465 -GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
            G    ++   +  ++   D ++      + I +  +IV E
Sbjct: 473 LGDHIAQKGSNITAERLRFDFSHPAPMTKEEIQRVEDIVNE 513



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/144 (43%), Positives = 87/144 (60%), Gaps = 5/144 (3%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+ATHLLH AL  +LG H++Q GS IT + LRFD +H  P+T  E++ +ED VN+ 
Sbjct: 455 TTKYHTATHLLHKALKMVLGDHIAQKGSNITAERLRFDFSHPAPMTKEEIQRVEDIVNEQ 514

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I ++L V   +M+ E+A   GA AL G KY  +V+V ++     G  S  +CGG HV  T
Sbjct: 515 IRRDLKVTMEVMDLEEAKKGGATALFGEKYESKVKVYTI-----GDFSKEVCGGPHVEHT 569

Query: 703 GEIMLLYIVSESSIRAGIRRIEAI 726
           G I    I  E S  AG+RRI A+
Sbjct: 570 GLIGTFKIQKEQSSSAGVRRIRAV 593


>gi|167044057|gb|ABZ08742.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_APKG4H17]
          Length = 898

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 210/941 (22%), Positives = 362/941 (38%), Gaps = 183/941 (19%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSF---GGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  + L + LLT++F +D++    
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSIPNSNGYWKDECVDLDYRLLTEQFGVDKK---- 192

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                                     +   ++ W           S  FF +G       
Sbjct: 193 -------------------------EVVFVEDVWEGGG---SFGSSLEFFVKG------- 217

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                     +E+ N VF +F Q +      L +  ID G GLER A +       YD  
Sbjct: 218 ----------LELGNAVFTEF-QGDLSNYKTLDQQIIDMGAGLERFAWLTMGTPTAYDC- 265

Query: 248 LFKHLIQASEQVTGMKYEGNNIVNH----------------------------------- 272
            F  +     Q  G+      +V +                                   
Sbjct: 266 CFGPITNNLLQQAGIDTNDELLVTYFTKIAKHFERFSDLSEVRKNAIKSAGLSDEQVNKI 325

Query: 273 -------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                   +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L      M  +
Sbjct: 326 IIPLEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKLD-MNGI 384

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           + A    + + YPEL + +  I+  +  E  R+  +  R    ++ ++S L +   +  D
Sbjct: 385 VDAQIDYLKNTYPELEKTREDIKTIIGIESGRYENSKLR----MEKIVSKLNQKPTV--D 438

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
              +LY++ G+  D ++++     +      +F   L E     +       S       
Sbjct: 439 DLIRLYESDGVTPDYLKEMKVISDIPS----TFYSKLSELHQSKKQKEQDQLS------- 487

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
                    T+ + Y                      D     + ++K+  +        
Sbjct: 488 ---LAGLPGTELLYYGD--------------------DPKEFDAKVLKSFDK-------- 516

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                  VV D+T FYA  GGQ  D G         ++ DV K    I      ++ GI 
Sbjct: 517 ------YVVLDKTSFYARGGGQEPDHGTIEN----FEVVDVSKHGNVIVH---ELKNGIP 563

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +   ++   ++ + R  ++ NH++TH+L+ +  ++LGS V Q+ +    D  R D+TH  
Sbjct: 564 KEGSTVSCVVNSKRRDDITKNHTSTHILNSSSRSVLGSWVWQHSAFKEEDHARLDITHHS 623

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEY 683
            +T  E+  IED  N ++ +N+PV     +R  A       +   G      +R+VS+E 
Sbjct: 624 ALTDDEITKIEDLANSVVEKNIPVTIENFDRGTAEQKYGFKIYQGGIVPVKSIRIVSIE- 682

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                     CGGTHV  T EI L+ I     I+ G+ RIE ++G  A  ++   D  L 
Sbjct: 683 ----DFDIEACGGTHVKQTDEIELIKITRTKRIQDGVVRIEFVSGDTALDYVKRHDADLI 738

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-------ADVNF 796
             +S LK  +  +  +  E  +E R+   +  +  +Q  +      +I          NF
Sbjct: 739 KKSSELK-DKTELKEKRREQKQELREKFPLLVENIIQSKIGSAIVDEIVVDITESGKPNF 797

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDL 855
                 + D      + + L +K     ++  G+ ++  K   +I   +       A D+
Sbjct: 798 CCTDSDQYDEFFHIGLGEKLIEK--DPWMVYCGVFEDGDKIRAIIYSGDQAGKDKKAGDI 855

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           A++ +++L GG GGG    AQ GG + +K + AI  V S +
Sbjct: 856 AKIVSEIL-GGAGGGTQRFAQGGGKDKSKKNDAIEKVKSMV 895


>gi|330960444|gb|EGH60704.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 316

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 182/318 (57%), Positives = 225/318 (70%), Gaps = 13/318 (4%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKDIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           CSEIFFD G  I GG PGS  E+G+RYIEIWN VFMQF +        LP  S+DTGMGL
Sbjct: 180 CSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGL 239

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  + +V+ DH+RS  FLIADG+
Sbjct: 240 ERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQASLKVVADHIRSCGFLIADGV 297

Query: 291 LPANEGRGYVLRRIMRRA 308
           LP+NEGRGYVLRRI+RRA
Sbjct: 298 LPSNEGRGYVLRRIIRRA 315


>gi|70607199|ref|YP_256069.1| alanyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
 gi|73920796|sp|P35029|SYA_SULAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|68567847|gb|AAY80776.1| alanyl-tRNA synthetase [Sulfolobus acidocaldarius DSM 639]
          Length = 907

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/900 (23%), Positives = 367/900 (40%), Gaps = 156/900 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH ++P   ++      L  T + +V F+   T G  KP    +
Sbjct: 62  TVRESREKFLRFFEKRGHTIVPPKPVVAKWRDDLYLTIASIVDFQPFVTSGLAKPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  +  A +  T
Sbjct: 122 VVSQPCIRL----EDVDNVGITFGRHLTTFEMAAHHAFNYPDKQIYWKDETVAFAKEFFT 177

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           +E  + + +L                                +++W     G  GPC E+
Sbjct: 178 EELGIPEDQL-----------------------------NFKESWWEGG--GNAGPCFEV 206

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
                                 +E+  LVFMQ+E +  Q+   L    +DTG G+ER+A 
Sbjct: 207 TV------------------GGLELATLVFMQYEIR-GQDYVPLKLKIVDTGYGVERIAW 247

Query: 236 VLQEKTNNY-----------------------------------DIDLFKHLIQASEQVT 260
             Q     +                                   D D+ + +    E + 
Sbjct: 248 FTQRTPTAFHAIYGNLVSSFYKKIGVGEVNNELLKAAAIYAGRIDPDIKETITAHREHLA 307

Query: 261 G-----MKYEGNNIV-NHRV--IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
                 +KY    +    RV  ++DH ++ + ++ADG++P+N G GY+ R ++RRA+   
Sbjct: 308 KQLGLDLKYVNEELTRAARVFQVLDHTKTIALMLADGLVPSNSGEGYLGRLLIRRALRVL 367

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
           RLLG     +  L+          +P++++ K  I + + +E+E++  T+ +    +  +
Sbjct: 368 RLLGSDVK-LHELIKDQIDYWKEDFPQMLKNKDYIVDAVINEEEKYNDTISK----IPSI 422

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL-AGIDII-SFNQALEEQRSRAR 430
           LS L K   ++ D    +YD++G+  D++ D    R +   ++I  +F   + ++   A 
Sbjct: 423 LSTLSKKSKVDLDELINIYDSNGISPDLILDEARKRNININVEIPHNFYSIVAKKHQNAL 482

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                      E I     +K   T  + Y       F                    ++
Sbjct: 483 VRENRKDKIPKEVIDEINNKKIEPTVPLYYKDQYLRTF--------------------NA 522

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQK 548
            V    +               +V DQT FY E GGQ+GDTG         + ++ D QK
Sbjct: 523 KVLLNYKN-------------FLVLDQTTFYPEGGGQIGDTGIIRSIEGNKQAKVIDTQK 569

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             +G+ VH    +   ++    +   ID+Q R ++  +H+ TH++  A   +LG H  Q 
Sbjct: 570 Y-KGVIVHILDKDSPFIQ-GEQVYGEIDWQRRYRIMKHHTVTHVILSATRRVLGEHAWQA 627

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  T    R DVTH K  T  E++ IED  N II     V    + R +A      ++ 
Sbjct: 628 GAEKTEYKGRLDVTHYKLPTEEEIRKIEDFANYIINDRRKVRPLYIERTEAEMKYGVSIY 687

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                +   +  +E E+  +     CGGTH+ +TGEI  + IV+   ++ G+ R+E + G
Sbjct: 688 AGGIPEGSEIRLIEIENWDI---EGCGGTHLINTGEIGGVKIVNVEKLQDGVIRLEYVAG 744

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
               ++   QDEKL  ++  L      +  R+++  EEY  LQ +  K +  +       
Sbjct: 745 DMVSNYARQQDEKLNEISKLLNSPVSQINVRLKKHLEEYENLQNLLDKYRKIVLDRIQEI 804

Query: 789 HKIADVNFMSHII--SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
            +   VN ++  I    +D + +K VM  +    Q+   +++ I  +   +V I  ++D+
Sbjct: 805 AERISVNGITIYILRDFIDEQLIKEVMRKITSNNQN---IVISIRGKDTKNVEIATSKDI 861


>gi|315187025|gb|EFU20782.1| alanyl-tRNA synthetase [Spirochaeta thermophila DSM 6578]
          Length = 603

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 165/525 (31%), Positives = 282/525 (53%), Gaps = 24/525 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  ++ FF+++GH  +   SLIP NDPT++FT +GM P      G E P  + +
Sbjct: 1   MTGKELREKYIRFFREHGHAEISGFSLIPENDPTVLFTTAGMHPLVPYILGAEHPAGKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
              Q+C+R G    D+D VG    H TFFEMLGN+S G YFKE AI+++++ LT      
Sbjct: 61  VDYQRCIRTG----DIDAVG-DASHLTFFEMLGNWSLGDYFKEEAIRMSYEFLTSPRWLG 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           +D  RL +TV+        DEE+ ++W+ + G+  ++I  ++   N+W    +TGPCGP 
Sbjct: 116 IDPGRLSVTVFAGDEMVPRDEESAEIWRSL-GIPEERIHFMSREHNWWGPAGKTGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +E+F D G+   G          +Y EIWN VFM++ ++       L +  +DTGMGLER
Sbjct: 175 TEMFIDTGKPPCGPDCKPGCSCGKYFEIWNDVFMEYNKKADGTYEPLSRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
              +LQ K + YD + F  +I+A E+ TG  Y  +    V+ R+I DH+++++F++ D  
Sbjct: 235 TTAILQGKQSVYDTEFFVPIIRAIEESTGAVYGRDPEKDVSIRIISDHIKAATFILGDER 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RRA+ +AR LG     +      +       YP L + +  + 
Sbjct: 295 GVTPSNVGQGYVLRRLIRRAIRHARKLGVEGNFVHLPAQVVLDMYKEYYPLLAEKRDFVL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR E+++F KTL +G    + +L +L K+  +++ G +AF+LYDT+G P+++ +++  
Sbjct: 355 EELRVEEDKFLKTLQKGEHEFEKMLPNLLKNPKKVIPGRIAFRLYDTYGFPIEVTEELAR 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY--DLLR 464
             GL  +D   F++  E  R R++  +  +  G          + + AT  +     ++ 
Sbjct: 415 EHGLT-VDRAGFDEEFERHRERSKQGADRVFKGGLADHTEETTKLHTATHLLHQALRIVL 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           G    ++   +  ++   D ++      + I +  EIV + +   
Sbjct: 474 GPHVQQKGSNITPERLRFDFSHPDKLTPEQIRKVEEIVNQKIKED 518



 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 12/196 (6%)

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR-------RQLSINHSAT 590
           G  +++T+   +  G+ V  A  +    R         D   +        + +  H+AT
Sbjct: 403 GFPIEVTEELAREHGLTVDRAGFDEEFERHRERSKQGADRVFKGGLADHTEETTKLHTAT 462

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ITP+ LRFD +H   +T  +++ +E+ VN  I ++LPV 
Sbjct: 463 HLLHQALRIVLGPHVQQKGSNITPERLRFDFSHPDKLTPEQIRKVEEIVNQKIKEDLPVT 522

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +M  E+A   GA A    +Y+++V+V SV     G  S  +CGG HV  TG +    I
Sbjct: 523 MEVMTLEEAKEKGAIAFFTDRYDEKVKVYSV-----GDFSKEVCGGPHVERTGVLGRFKI 577

Query: 711 VSESSIRAGIRRIEAI 726
           V E S  AG+RRI A+
Sbjct: 578 VKEQSSSAGVRRIRAV 593


>gi|307718489|ref|YP_003874021.1| alanyl-tRNA synthetase AlaRS [Spirochaeta thermophila DSM 6192]
 gi|306532214|gb|ADN01748.1| alanyl-tRNA synthetase AlaRS [Spirochaeta thermophila DSM 6192]
          Length = 603

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/525 (31%), Positives = 282/525 (53%), Gaps = 24/525 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                +R  ++ FF+++GH  +   SLIP NDPT++FT +GM P      G E P  + +
Sbjct: 1   MTGKELREKYIRFFKEHGHAEISGFSLIPENDPTVLFTTAGMHPLVPYILGAEHPAGKRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
              Q+C+R G    D+D+VG    H TFFEMLGN+S G YFKE AI+++++ LT      
Sbjct: 61  VDYQRCIRTG----DIDSVG-DASHLTFFEMLGNWSLGDYFKEEAIRMSYEFLTSPRWLG 115

Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           +D  +L +TV+        DEE+ ++W+ + G+   +I  ++   N+W    +TGPCGP 
Sbjct: 116 IDPEKLSVTVFAGDEMVPRDEESAEIWRSL-GIPDGRIHFMSREHNWWGPAGKTGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +E+F D G+   G          +Y EIWN VFM++ ++       L +  +DTGMGLER
Sbjct: 175 TEMFIDTGKPPCGPDCKPGCSCGKYFEIWNDVFMEYNKKADGSYERLDRRCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
              +LQ K + YD + F  +I+A E+ TG  Y  +    V+ R+I DH+++++F++ D  
Sbjct: 235 TTAILQGKQSVYDTEFFVPIIRAIEESTGAVYGKDPEKDVSIRIISDHIKAATFILGDER 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RRA+ +AR LG     +      +       YP L + +  + 
Sbjct: 295 GVTPSNVGQGYVLRRLIRRAIRHARKLGVEGNFVHLPAQVVLDMYKEYYPLLAEKRDFVL 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406
           E LR E+++F KTL +G    + +L +L K+  +++ G +AF+LYDT+G P+++ +++  
Sbjct: 355 EELRGEEDKFLKTLQKGEHEFEKMLPNLLKNPKKVIPGRIAFRLYDTYGFPIEVTEELAR 414

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY--DLLR 464
             GL  +D   F++  E  R R++  +  +  G          + + AT  +     ++ 
Sbjct: 415 EHGLT-VDRAGFDEEFERHRERSKQGADRVFKGGLADHTEETTKLHTATHLLHQALRIVL 473

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
           G    ++   +  ++   D ++      + I +  EIV + +   
Sbjct: 474 GPHVQQKGSNITPERLRFDFSHPEKLTPEQIRKVEEIVNQKIKED 518



 Score =  156 bits (393), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 12/196 (6%)

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR-------RQLSINHSAT 590
           G  +++T+   +  G+ V  A  +    R         D   +        + +  H+AT
Sbjct: 403 GFPIEVTEELAREHGLTVDRAGFDEEFERHRERSKQGADRVFKGGLADHTEETTKLHTAT 462

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           HLLH AL  +LG HV Q GS ITP+ LRFD +H + +T  +++ +E+ VN  I ++LPV 
Sbjct: 463 HLLHQALRIVLGPHVQQKGSNITPERLRFDFSHPEKLTPEQIRKVEEIVNQKIKEDLPVT 522

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             +M  E+A   GA A    +Y+++V+V SV     G  S  +CGG HV  TG +    I
Sbjct: 523 MEVMTLEEAKEKGAIAFFTDRYDEKVKVYSV-----GDFSKEVCGGPHVERTGVLGRFKI 577

Query: 711 VSESSIRAGIRRIEAI 726
           V E S  AG+RRI A+
Sbjct: 578 VKEQSSSAGVRRIRAV 593


>gi|242011581|ref|XP_002426527.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212510653|gb|EEB13789.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 809

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 197/793 (24%), Positives = 336/793 (42%), Gaps = 73/793 (9%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  FK++F G  +P    V   QKC+R GGKHNDL  VG    HH+FFEMLGN+SFG YF
Sbjct: 1   MNQFKDVFLGLTRPAATKVANYQKCIRVGGKHNDLSQVGNDGSHHSFFEMLGNWSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRI 154
           K+ A +++W+LLT  ++L   RLY+T +  DE        E  ++W++I G+  + I+  
Sbjct: 61  KKEACKMSWNLLTDVYNLQPERLYVTYFGGDESLGLGPDLEVREIWREI-GIKENHILPF 119

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
            + DNFW M   GPCG C+EI +D            + + +   E+WN+VFMQ+ +    
Sbjct: 120 GSKDNFWEMGTIGPCGVCTEIHYDHVPGRKDVGNFVNADRDDVTELWNIVFMQYNRNENN 179

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNN- 268
           E   L K  +DTGMG ER+   LQ KT+NYD DLF  L +   + +        Y+  + 
Sbjct: 180 ELVKLGKHFVDTGMGFERLVATLQGKTSNYDTDLFLPLFEGIRKYSKHGGYTGTYDVRDS 239

Query: 269 -IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLL 326
              ++R+I DH R  S  ++DG+LP ++ +   +R I+R+A+  ++        L+ ++ 
Sbjct: 240 IDSSYRIIADHGRMISVALSDGMLPNHQNK---VRTIIRKALRVSKKSFNCDSGLLKNVT 296

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGK-------------------------- 360
             +   +  AYP++ +    I   +  E++ F +                          
Sbjct: 297 NYVAETLEDAYPQIGKHLSKIHFIIEQEEKIFKEQQNVALKKFKKYKNIFPKIKNEDIED 356

Query: 361 --TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
              L  GL L    +    K   L  +  + LYDT+GL  +  + +    GL   D  S+
Sbjct: 357 NPNLISGLELFKKYIKDGRKK--LLDEDVWILYDTYGLSPENTKKLSQILGL-DFDESSY 413

Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478
                E   +             EK    + E      F   D +  +       +    
Sbjct: 414 ENY--ENNKKKNEMKKLEKKIYDEKHEGDVIESKTQQNFNMADDVELTTKDYFKYEYRID 471

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
                L     + V AI+  G+  ++      +G ++ +V D+T  ++    +  D G  
Sbjct: 472 GSDKYLFLNQPTSVLAIIINGKYHDKISINDFNGNEIGLVLDKTQLFSAEKNRNSDLGYL 531

Query: 535 I--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE----MSLVLTIDYQNRRQLSINHS 588
           I   + I   +  V K   G+ VH+    +     E     + +L ++   R  L  NH+
Sbjct: 532 IFDNNDILFDVKKVCKFGNGV-VHYGSFTKYPRNAEMGIHDTGILILNENVRLNLMKNHT 590

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNL 647
             +LL   +         +N S + PD    D+   K      ++  +E+ V  +I  ++
Sbjct: 591 CLNLLKGGIREKFPLTCEKN-SMVNPDSFTLDLMVYKFKFALNDILDLENFVRKMIKGDV 649

Query: 648 PVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            V  + +N                 +     +  +E  +G      +C G HV  T  + 
Sbjct: 650 SVNRKPLNHLQFYYLWENIYFKPGISLIESEIPLIEINNGFTLIREVCNGAHVLRTSHLE 709

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVV----GRVE 761
              I+    I  G+ R+E +TG  A   +   D K+      LK   + ++V     ++ 
Sbjct: 710 DFTILKLKKISYGVHRMEGLTGIHA-KQIRENDLKMDKKWKILKGQMEKDIVSDNLKKIT 768

Query: 762 EIWEEYRKLQLIH 774
           +I +E   ++L +
Sbjct: 769 DIMDEINSMELSY 781


>gi|167043875|gb|ABZ08564.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_APKG3E18]
          Length = 898

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 211/948 (22%), Positives = 363/948 (38%), Gaps = 197/948 (20%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  I L + L+T++F +D++    
Sbjct: 140 ---FKDLENVGITGRHFSSFCMIGQHSIPNSHGYWKDECIDLDYRLVTEQFGVDKK---- 192

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                                     +   ++ W           S  FF +G       
Sbjct: 193 -------------------------EVVFVEDVWEGGG---SFGSSLEFFVKG------- 217

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                     +E+ N VF +F Q +      L +  ID G GLER A +       YD  
Sbjct: 218 ----------LELGNAVFTEF-QGDLSNYKTLDQQIIDMGAGLERFAWLTMGTPTAYDC- 265

Query: 248 LFKHLIQASEQVTGMKYEGNNIVNH----------------------------------- 272
            F  +     Q  G+      +V +                                   
Sbjct: 266 CFGPITNNLLQQAGIDKNDELLVTYFTKIAKHLERFSDLSEVRKNAIKSAGLSDEQMNKI 325

Query: 273 -------RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                   +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L      M  +
Sbjct: 326 IIPVEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKLD-MNEI 384

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           + A    + + YPEL + +  ++  +  E  R+  +  R    ++ ++S L +   +  D
Sbjct: 385 VDAQIDYLKNTYPELEKTREDVKTIIGIESGRYENSKLR----MEKIVSKLNQKPTV--D 438

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
              +LY++ G+  D ++++     +      +F   L +     +       S       
Sbjct: 439 DLIRLYESDGVTPDYLKEMKVISDIPS----TFYSKLSQLHQSKKQKEQDQVS------- 487

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
               E    T+ + Y                      D     + I+K+  +        
Sbjct: 488 ---LEGLPETELLYYGD--------------------DPKEFDAKILKSFDK-------- 516

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                  VV D+T FYA  GGQ  D G       + ++ DV K    I VH   ++ GI 
Sbjct: 517 ------YVVLDKTSFYARGGGQEPDHGTI----GKFEVVDVSKHGN-IIVH--ELKNGIP 563

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +   ++   ++ + R  ++ NH++TH+L+ +   +LGS V Q+ +    D  R D+TH  
Sbjct: 564 KEGNTVSCVVNSKRRDGITKNHTSTHILNSSSRNVLGSWVWQHSAFKEEDHARLDITHHS 623

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEY 683
            +T  E+  IE   N  + +N+PV     +R  A       +   G      +R+VS+E 
Sbjct: 624 ALTDDEITKIEKLANSAVEKNMPVTIENFDRGTAEQKYGFKIYQGGIVPVKSIRIVSIE- 682

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                     CGGTHV  TGEI L+ I     I+ G+ RIE ++G  A  ++   D+ L 
Sbjct: 683 ----DFDIEACGGTHVKKTGEIELIKITRTKRIQDGVVRIEFVSGGTAIDYVKQHDDDLI 738

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             +  LK              +E R+ Q    + K  + VE ++  KI   + +  II +
Sbjct: 739 KKSVELKDKTE---------LKEKRQEQKQELREKFPILVESITQSKI-GTSIVDEIIVD 788

Query: 804 VDSKELKSVMDALQKKI--------------QSGIIMLVGISKEK-KASVLIVVTEDLLD 848
           +      +    +  +               +   ++  G+ ++  K   +I   +    
Sbjct: 789 ITESGKPNFCCTISDQYGEFFHISFGEKLIEKDPWMVYCGVFEDGDKIRAIIYSGDQAAK 848

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              A  +A++ ++VL GG GGG    AQ GG + +K + AI  V S +
Sbjct: 849 DKKAGYIAKIVSEVL-GGAGGGNQRFAQGGGKDKSKKNDAIEKVKSMV 895


>gi|167042221|gb|ABZ06953.1| putative tRNA synthetases class II (A) [uncultured marine
           crenarchaeote HF4000_ANIW93I24]
          Length = 898

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 219/940 (23%), Positives = 367/940 (39%), Gaps = 181/940 (19%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVNRYPVVCRWRDDLYFTIASIVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  I L + L+T++F +D++    
Sbjct: 140 ---FKDLENVGLTGRHFSSFCMIGQHSIPNSQGYWKDECIDLDYRLVTEQFGVDKK---- 192

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                                + I      ++ W           S  FF +G       
Sbjct: 193 ---------------------EVIFV----EDVWEGGG---SFGSSLEFFVKG------- 217

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD-- 245
                     +E+ N VF +F Q +      L +  ID G GLER A +       YD  
Sbjct: 218 ----------LELGNAVFTEF-QGDLSNYKTLDQQIIDMGAGLERFAWLTMGTPTAYDCC 266

Query: 246 ---------------------IDLFKHLIQASE-------------QVTGMKYEGNNIV- 270
                                +  F  + +  E             + +G+  E  N + 
Sbjct: 267 FGPITNNLLQQVGIDANDELLVTYFTEIAKHLERFSDLSEVRKNAIKTSGLSDEQINKII 326

Query: 271 ----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +IVDH+R+  F I+DG LP+N G GY LR ++RR +     L      M  ++
Sbjct: 327 TPLEGIYLIVDHIRTLIFAISDGALPSNVGGGYNLRMMLRRIISTMDRLSLKFD-MNEIV 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
                 + + YPEL + +  I+  +  E  R+  +  R    ++ ++S L +   +  D 
Sbjct: 386 DTQINYLKNTYPELEKTREDIKTIIGIESGRYENSKLR----MEKIVSKLNQKPTV--DD 439

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
             +LY++ G+  D ++++     +      +F   L +     +       S        
Sbjct: 440 LIRLYESDGVTPDYLKEMKVISDIPS----TFYSKLSQLHQSKKQKEQDQVS-------- 487

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
              EK   T+ + Y                      D     + I+K+  +         
Sbjct: 488 --LEKLPDTELLYYGD--------------------DPKEFDAKILKSFDK--------- 516

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 VV D+T FYA  GGQ  D G       + ++ DV K    +      ++ GI +
Sbjct: 517 -----YVVLDKTSFYARGGGQEPDHGTIE----KFEVVDVVKHGNVVVH---ELKNGIPK 564

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   ID + R  ++ NH++TH+L+ +  ++LGS V Q+ +    D  R D+TH   
Sbjct: 565 EGSTVSCVIDSKRRDGITKNHTSTHILNSSTRSVLGSWVWQHSAFKEEDHARLDITHHSA 624

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +T  E   IE   N I+ +N+ V     +R  A       +   G      VR+VS+E  
Sbjct: 625 LTDDETAKIEKLANSIVEKNMSVTIESFDRGTAEQKYGFKIYQGGIVPVKSVRIVSIE-- 682

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                    CGGTHV  TGEI L+ I     I+ G+ RIE ++G  A  +    D  +  
Sbjct: 683 ---DFDVEACGGTHVKKTGEIELIKITRTKRIQDGVVRIEFVSGPTALDYTKQHDASIIK 739

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRK----LQLIHAKRKLQLNVED---LSCHKIADVNFM 797
            ++ LK     +  +  E  +E R+    L     + K+  N+ D   +   +    NF 
Sbjct: 740 KSAELKEK-MEMKEKRREKKQELRERFPILVDSIIQSKIGTNIVDEIIVDMTESGKPNFC 798

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLA 856
           S I  + D     S+   L +K     ++  G+ ++  K   +I   E       AVD+A
Sbjct: 799 STISDQYDELFHISLGQKLIEK--DPWMVYCGVFEDGDKIRTIIYSGEQAAKYKKAVDIA 856

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +L +++L GG GGG    AQ GG    K + AI    + +
Sbjct: 857 KLVSEIL-GGAGGGNQRFAQGGGKEKFKKNDAIEKAKAMV 895


>gi|256370739|ref|YP_003108564.1| putative alanyl-tRNA synthetase fragment [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009531|gb|ACU52891.1| putative alanyl-tRNA synthetase fragment [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 449

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/452 (35%), Positives = 256/452 (56%), Gaps = 22/452 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I+  FL+FF+K  H+++ S+SL+  +DP+LMFTN+GM  FK  F G + P Y  +
Sbjct: 1   MKYKDIKKIFLDFFKKKNHQIIDSASLLAKDDPSLMFTNAGMNRFKKYFLGSKNPKYVRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T +QKC+R  GKHND+ +VGR   HHT FEMLGN+SFG YFK+ AI+ AW+LLTK F + 
Sbjct: 61  TNIQKCLRITGKHNDISDVGRDKYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTKTFKIR 120

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  +Y+T++        + D+E++K WK +  ++ ++I+      NFW M  TGPCG  S
Sbjct: 121 KSNIYVTIFSGNINENLEFDKESYKYWKNL--INENQIVFFDKKHNFWEMGNTGPCGYSS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    ++     IE+WNLVF++F +        L K  +DTGMG
Sbjct: 179 EIHIDLREKKEKKKIEGKKLINKGHPLVIELWNLVFIEFFRTQNGNLEKLSKSHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIA 287
           +ER+  VLQ K + YD D+F  LI+  E +TG  Y       +  RV+ DH+R+  F I 
Sbjct: 239 IERLCMVLQNKKSTYDTDIFISLIKEIENITGKVYGKLEEEDIAIRVLADHIRAIVFAIK 298

Query: 288 DGILPANEGRGYVLRRIMRRAM-CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346
           DGI+P+N   GY++R+++RR +  Y   L   +  +  L+  + +E  +   ++ +    
Sbjct: 299 DGIIPSNNKSGYIIRKLLRRTIVYYFLYLNIKKSFLYKLVKVVLSEKKNENSKIKEN--F 356

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I   ++ E+  F K L +       ++S L K    I+NG + F+LYDT+GLP ++  ++
Sbjct: 357 ISNLIKKEELLFFKNLFKVSKKFYKIISSLKKEGKTIINGKIIFELYDTYGLPFEL-ANL 415

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
              +    ID  SF + + +Q+ R++     +
Sbjct: 416 FALKNNFIIDKFSFEKEMLKQKLRSKTKKKNI 447


>gi|224534195|ref|ZP_03674773.1| alanine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514297|gb|EEF84613.1| alanine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 594

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/517 (31%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFQIIGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSFDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFIPIIKRIEFISGKTYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           GI P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 GIFPSNVGQGYVLRRLIRRSVRYAKKLGIKSYFLADLVDSVETIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSIEEEKFFKTLFQGEQEFIKITRNLS-SKTIPGDIAFKLYDTYGFPYELTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   ID + F++  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NIDKLGFDEYFKKHQKASKKGGDKIFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVKQKGSNITAERLRFDFVHSKKMTDDEIKRVEEIVN 509



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/146 (43%), Positives = 84/146 (57%), Gaps = 5/146 (3%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HSK +T  E+K +E+ VN
Sbjct: 450 YETTKLHTATHLLHKALQLVLGDHVKQKGSNITAERLRFDFVHSKKMTDDEIKRVEEIVN 509

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  +L V   IM   +A   GA AL G KY++ V V  ++       S  +CGG HV 
Sbjct: 510 LQIKNSLSVKKSIMELSEAREKGAMALFGEKYDNLVSVYEIDG-----FSLEVCGGPHVE 564

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI 726
           +T E+    I  E S  +GIRRI+AI
Sbjct: 565 NTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|16081904|ref|NP_394309.1| alanyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|22096203|sp|Q9HJW4|SYA_THEAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|10640126|emb|CAC11978.1| alanyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 871

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 193/877 (22%), Positives = 336/877 (38%), Gaps = 166/877 (18%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++S +R  F++FF+K GH+ L    ++P     ++  N+ +  F+   T G  +P    +
Sbjct: 61  SLSEMRDAFIKFFEKRGHKFLKPYPVVPRWREDVLLVNASIYDFQPHVTSGIVRPPGNPI 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + SF       Y+KE  +   +D LT+
Sbjct: 121 VMSQPSIRM----NDVDLVGITGRHLTSFEMLCHDSFNTKDKTVYWKEETVHYCYDFLTE 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D + +                             +  +  WS    G  G   E+F
Sbjct: 177 GLGIDGKLI-----------------------------SFKEKPWSGG--GNAGNALEVF 205

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-------LPKMSIDTGMG 229
                              R +E+  LVFM  ++       I       +    +DTG G
Sbjct: 206 V------------------RGLEVATLVFMDMKEDPNGPYEIDGIRYSKMDMRIVDTGYG 247

Query: 230 LERMATVLQEKTNNYDI---DLFKHLIQAS---------------EQVTGMKYEG----- 266
           LER+  + Q     Y     D+ +H+++ S                 V    YE      
Sbjct: 248 LERLTWLSQGTPTVYQAIYPDIIQHVMKNSSVSDIDEEFLSEVVKASVMKEPYEESFVIS 307

Query: 267 ----------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC 310
                             + +  +++DH RS   + A  ++P+N   GY+ R ++RRA  
Sbjct: 308 QLEKRYPDARQRFEEIKKVRDVFLMIDHARSLMHMFAAYVIPSNVKVGYLARMLIRRAYR 367

Query: 311 YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
                GY   LM  L+     ++    P+  +    + + L  E+E++      G  ++D
Sbjct: 368 AISNTGYRGSLM-DLIRMNHEDLKDIVPDFPEQ--FVSDVLSIEEEKYRDVERHGTQIID 424

Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430
            ++S+ GK   L+ D    LYD+HG+  + ++  L  +G+      +F+  + ++  +  
Sbjct: 425 KMISNKGK---LSLDDLVLLYDSHGISPETVKAYLETKGMEIDVPDNFHAIVIKRHEK-- 479

Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490
                                 G T+   Y          E R +    P +    G   
Sbjct: 480 ----------------------GETEKKKYSDYP----EIETRTLYYDDPFMREFTG--- 510

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550
               +  +G            E++ D+T FY E GGQ  D G     G R+ +  V+K  
Sbjct: 511 --LVLFSKGN-----------EIILDKTAFYPEGGGQPWDLGYFEYKGKRINVVAVRKYG 557

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           + I         G +   + +   ID++ R +L ++H++THLL   L  +LG HV QNG 
Sbjct: 558 KTIVH----TLDGEIPQGVRVHGVIDWERRSRLMVHHTSTHLLLGVLREVLGEHVWQNGV 613

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-- 668
               +  R D+TH + I    ++ IE+ V D+I +   V  R ++   AI      L   
Sbjct: 614 QKDVEESRLDITHYRKIDEETIRKIEERVFDLIREGREVSVRNLDWYSAIDKYGFRLFEG 673

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           G     ++RVV ++  D        CGGTH+ +   I +L I    +I+  I RI    G
Sbjct: 674 GVPLTPKIRVVEIQGVDA-----EGCGGTHLKNISSIGVLKIRKVEAIQENIYRITFSAG 728

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             A        E    +++ LK     +   V E+ + Y  L+   A+ + +     ++ 
Sbjct: 729 VPALHLFQESYEASYGISTLLKKPIEEIAQSVSELSKGYADLRRSLAEARRRDIENRIAN 788

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            K        + I E D  ++  +      +    I+
Sbjct: 789 AKKIGTPGAEYPIIEADDADIGEISRIAHSRKVDLIV 825


>gi|167042980|gb|ABZ07693.1| putative tRNA synthetases class II (A) [uncultured marine
           microorganism HF4000_ANIW137P11]
          Length = 961

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 200/970 (20%), Positives = 362/970 (37%), Gaps = 166/970 (17%)

Query: 7   IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTVQ 65
           +R  FL FF++  H  +    +I      +  T + +  F+   T GQ  P    +   Q
Sbjct: 76  MREMFLGFFEERDHTRIEPYPVIARWRDDIHLTIASIADFQPHVTSGQVPPPANPLVISQ 135

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-------YFKERAIQLAWDLLTKEF 118
            C+R      D+  VGR+ RH + FEM+ + +F         Y+ ++ ++   ++L+   
Sbjct: 136 PCIRL----TDVAAVGRSGRHLSTFEMMAHHTFNRPKEGAVVYWIDQCVRYCDEMLSDRL 191

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
                                     G++A +I   T  +N WS    G  GP  E+   
Sbjct: 192 --------------------------GIAASEI---TYVENPWSGG--GNAGPALEVIV- 219

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMGLE 231
                              +E+  LVFM  E+    +          +    IDTG GLE
Sbjct: 220 -----------------GGLELATLVFMSLEEHTDGDIEIKGLRYREMDLQIIDTGYGLE 262

Query: 232 RMATVLQEKTNNYD--------------------------------------------ID 247
           R           Y+                                            ID
Sbjct: 263 RFCWAAAGTPTIYEAIYPESVEWLKELAGFDAMVTGLGLDVDTDALLGELSKLAGILNID 322

Query: 248 LFKHLIQASEQVTG-------------MKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           +   +    E++               +K     + +   I DH+++   ++ DG++P+N
Sbjct: 323 VGTDVASLYEKLAERLGEKGISISVGELKRLTEPLSSIYAIPDHMQAICNMLGDGLVPSN 382

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
              GY++R + RR       L      +  L           +   +Q++  + + L  E
Sbjct: 383 AKAGYLVRMLARRVCRMLGDLSLAVT-LAELGAHHMDT-HLDFDGFVQSRSAVLQILDLE 440

Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           + R+ + L +G   +   L  + K       +  F+L +  GL  +++  I  A G   +
Sbjct: 441 EARYHEMLRKGEAAVRTALRSVPKTAAEAPDETLFRLAEERGLNPEMVVSIAHALGWENL 500

Query: 414 DI-ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            + + F   +      A  ++L   +    K   +     GA   +        +F ++ 
Sbjct: 501 SVRVGFAADM------AARNALHTKAAAVAKTREAFFATNGAAATV-------REFYEDT 547

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532
            +   +   +D +      +  +        E        V+   T FY E GGQLGD G
Sbjct: 548 SQTAFETTVLDCSALTEVQLSTL----NFSSEVKGEPTHAVILRSTLFYPEGGGQLGDQG 603

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
              GD     + D + + E I      +  G ++    +   +D+  RRQL  +H+A H+
Sbjct: 604 SL-GDTS---VVDTRIEGEVIIH----LTDGPVQAG-PISGQVDWNRRRQLMDHHTAVHI 654

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +  +    LG H+ Q GS       R DVTH + +T  +L  IED+ N+IIA N  +   
Sbjct: 655 VGGSARAHLGPHIWQAGSNKGERYARLDVTHFQRLTRDDLHQIEDHANEIIAANHSIEKL 714

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +M R +A       L       + ++  +     G H    CGGTH    G++  L I+ 
Sbjct: 715 VMGRAEADQRFGFELYQGGPPKQQQIRIIRI---GEHDVQACGGTHHDEAGQVGELRIIR 771

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771
            S ++ G+ R++ + G+ AR H   Q+  L   +    VS  N+   V+  +EE++  Q 
Sbjct: 772 SSQVQDGVERLQIVAGETAREHARAQERLLNESSEVFGVSPENLPATVQRFFEEWKSQQK 831

Query: 772 ----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
               L     +L+ +       +   + +    I   + K++ +++  L +      + +
Sbjct: 832 RIEILEAEIVRLRTSGGGGDAVEKDGIRYAIMEIDG-EMKQMMTMLTQLTRDASKPTLAI 890

Query: 828 VGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           +G   +    ++      L   R +AV++    A  +GGGGG GRP +AQ GG NG+   
Sbjct: 891 LGTRSDGGKLIVASTEGSLAAERHDAVEILNAIAGHIGGGGG-GRPTLAQGGGSNGDGIP 949

Query: 887 QAIAGVASFL 896
            A+      L
Sbjct: 950 AALDAARQLL 959


>gi|161527876|ref|YP_001581702.1| alanyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
 gi|205830161|sp|A9A565|SYA_NITMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|160339177|gb|ABX12264.1| alanyl-tRNA synthetase [Nitrosopumilus maritimus SCM1]
          Length = 889

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 209/936 (22%), Positives = 362/936 (38%), Gaps = 181/936 (19%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
           EFF KN H  +    ++      L FT + +V F+ +   +   +     +   Q C+R 
Sbjct: 81  EFFVKNNHTSVSRYPVVCRWRDDLYFTIASVVDFQRVMGSKVVFEFPANPLVVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSF---GGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S    GGY+K+  + L + LLT++F +++     
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSVPDLGGYWKDECVDLDYRLLTEQFGINKD---- 192

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                                     +   ++ W+   +   GP  E F           
Sbjct: 193 -------------------------EVVFVEDVWAGGGS--FGPSLEYFV---------- 215

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI- 246
                   + +E+ N VF +F Q    +   L +  ID G GLER A +       YD  
Sbjct: 216 --------QGLELGNAVFTEF-QGELGKHTTLDQRVIDMGAGLERFAWITMGTPTAYDCC 266

Query: 247 -----------------------------------DLFKHLIQASEQVTGMKYEGNNIV- 270
                                              D    + + + +  G+  E    + 
Sbjct: 267 FGPINEKLFGTIGIDSDSEILRKYFTEIAKEIDHYDDLNQVRRLAVKNAGITDEQMQKMI 326

Query: 271 ----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326
                  +I DHLR+  F I DG LP+N G GY LR ++RR       L     +   L+
Sbjct: 327 TPLEGMYLIADHLRTLIFAITDGALPSNVGGGYNLRMMLRRINATISKLNLKLNI-DDLI 385

Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386
                 +   YPEL + +  ++  L+ E  R+ ++     V +      + +    + D 
Sbjct: 386 DLHVDYLKDTYPELDEKRDDVKSILKLESARYEESK----VHMKKKADKIKEKGAPSVDE 441

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
               Y++ G+  + ++++     +      SF   L +             S   + I  
Sbjct: 442 LITYYESDGITPEYLKEVDAISEIPS----SFYSKLSDLHQ----------SDKKKAIAE 487

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
              E    T+ + Y                      D     + ++K I           
Sbjct: 488 LPLEGLPETETLFYQD--------------------DPMEFSAKVLKVIDD--------- 518

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
                 +V D+T FYA  GGQ  D G   G     ++ +V K A+ I VH   +E G+ +
Sbjct: 519 -----MIVLDRTSFYARGGGQEPDFGSIAG----FKVINVDKHAD-IIVHQ--LEGGVPK 566

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D   R  ++ NH++TH+++ +   +LGS + Q+ +    D  R D+TH   
Sbjct: 567 EGETVSCKVDETRRSNITKNHTSTHIINASSRKVLGSWIWQHSAFKDDDHARLDITHHSS 626

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           +++ E++ IED  ND+I +N PV     +R  A       +   G      VR+VS+E +
Sbjct: 627 LSNDEVQKIEDEANDMIKKNYPVKINYYDRGTAEQKYGFRIYQGGVVPVKSVRIVSIEDK 686

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        CGGTHV  TG+I L+ I     I+ G+ R+E ++G  A  +   Q+++ K 
Sbjct: 687 D-----IEACGGTHVKKTGDIELIKITKTKRIQDGVVRLEFVSGPNAFEYEKQQEQESKR 741

Query: 745 LASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
                K  +     ++E+  EE   +  + I    +  L  ED+   +   +N    +  
Sbjct: 742 -----KAEEAVAKEQLEKQREENKSKAREKIPVLLEKVLAGEDV---ESDGINTKGKLCF 793

Query: 803 EVDSKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              S           KK+  +       G+ +    ++ ++V        NA ++A+  A
Sbjct: 794 TASSDYDDYFHQNFGKKLVGKDSTAAFCGVFEAG-PTIRVMVFSGEQSGVNAGEIAKKIA 852

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L GG GGG    AQ GG + +K D+AI+   S +
Sbjct: 853 SIL-GGSGGGDAKFAQGGGKDTSKKDEAISKAKSMI 887


>gi|320101298|ref|YP_004176890.1| alanyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
 gi|319753650|gb|ADV65408.1| alanyl-tRNA synthetase [Desulfurococcus mucosus DSM 2162]
          Length = 908

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 200/930 (21%), Positives = 357/930 (38%), Gaps = 165/930 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F +  GH ++    ++      L  T + ++ F+   T G   P Y  +
Sbjct: 59  SLQEVREKFIGFLRSKGHGVVDPYPVLARWRNDLYLTIASIIVFQPAVTEGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R     +D+DNVG T  RH T FEM G  +F       Y+ E  +    +   
Sbjct: 119 VIIQPSIRL----SDIDNVGLTFGRHLTSFEMGGMHAFNKPGRFIYWVEGILDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D   L                                + +W     G  GP  E+
Sbjct: 175 KEIGIDLDDLV-----------------------------FKEGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LV M ++     +    P + +D G G+ER+A 
Sbjct: 204 LVDG------------------MELATLVHMMYKVV-DGKYVENPVLVVDCGYGIERIAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRV--------------------- 274
             Q+    +   ++  LI   + V G++    +++   V                     
Sbjct: 245 FTQKTPTGFHA-IYGRLINEYKDVLGVEEPPYDVLKKAVYMLSDREIEGIREYERALREH 303

Query: 275 -----------------IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                            ++DH R+ S +++DG++P+N G GY+ R ++RR +     LG 
Sbjct: 304 GFGDHIDEFVKVIYLYSVLDHARTMSLMLSDGVVPSNTGEGYLARLVIRRLLRNLVRLGV 363

Query: 318 TEPLMM----HLLPALCTEMGSAYPE--LIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
               +      LL        + Y        +  I +    E  +F   + RG+ ++D 
Sbjct: 364 EPARLTDVVQELLDRQIKYWKNDYIYGKFEAHRDYIMDVAAVETAKFIDAVSRGIDIVDK 423

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +   L K + L  D    +YD+HG+P + + +     G+       F   + +     R 
Sbjct: 424 L---LKKRKSLGLDDLITIYDSHGIPPEFVAERAREHGVEVSIPGDFYSKIAQ-----RH 475

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S G+     E  + S             D++  +       +V    P +     V + 
Sbjct: 476 SSPGVLVKEKEHEFPS-------------DVVEWASRFPGTVRVFHMDPYL---TSVEAR 519

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  +  +              +V D+T  Y  AGGQ  DTG     G R  +  V K   
Sbjct: 520 VLGVRDR-------------YLVLDRTVMYPWAGGQDHDTGFIEVAGRRYAVEYVGKVGN 566

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I   H + E   +     + ++ID+  R +L  +H+ATH++  A   +LG HV Q G+ 
Sbjct: 567 VII--HVLKEPVEIAEGTVVNVSIDWYRRYRLMKHHTATHVVLAAARRVLGDHVWQAGAE 624

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            T +  R D+TH K +T  EL+ IED  N +I   + +    M + +A +     +   G
Sbjct: 625 KTVEKARLDITHHKSLTPEELRRIEDLANKLIEDRINLRFHEMGKFEAESKYGLRIYQGG 684

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             Y+  +R+V +   D        C GTHV +T EI  + IV+   I+ G+ R+E I   
Sbjct: 685 AVYSPILRIVEIPGWDA-----QACFGTHVHNTSEIGGVKIVNAERIQDGVVRLEFIAST 739

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-----VE 784
           R   H+   + ++    + +   QG++   V ++  E+ ++  +  + + +L        
Sbjct: 740 RLVDHIRSLEGEIDEALAVMGARQGDLASAVRKMSREHAEVSKLLEEYRARLADTLVSQG 799

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                 I  V+     +   D K L+ V++ L  K     ++  G + E      I V  
Sbjct: 800 VAGKTSICGVDVTYVELPVRDEKLLRQVLEELSLKQGILTVIDAGETLE------IAVKP 853

Query: 845 DLLDRFNAVDLARLSAKVLGGG-GGGGRPH 873
           +     N +DL + +A++   G  GGG+P 
Sbjct: 854 EKASEKN-IDLRKTAARLSAKGAKGGGKPD 882


>gi|329765739|ref|ZP_08257308.1| alanyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137805|gb|EGG42072.1| alanyl-tRNA synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 896

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 195/945 (20%), Positives = 348/945 (36%), Gaps = 192/945 (20%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTTVQKCVRA 70
            FF KNGH  +    ++      L FT + +V F+ I   +   +     +   Q C+R 
Sbjct: 81  SFFVKNGHTSVSRYPVVCRWRDDLYFTIASIVDFQRIMGSKVVFEFPANPLIVPQTCLR- 139

Query: 71  GGKHNDLDNVGRTNRHHTFFEMLGNFSFG---GYFKERAIQLAWDLLTKEFDLDQRRLYI 127
                DL+NVG T RH + F M+G  S     GY+K+  + L + LLT++F + +     
Sbjct: 140 ---FKDLENVGVTGRHFSSFCMIGQHSIPNSQGYWKDECVDLDFRLLTEQFGIKKE---- 192

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                                     +   ++ W+          S  +F +G       
Sbjct: 193 -------------------------EVVFVEDVWAGGG---SFGSSLEYFVRG------- 217

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                     +E+ N VF +F Q       IL +  ID G GLER A + +     YD  
Sbjct: 218 ----------LELGNAVFTEF-QGELGNHTILDQKIIDMGAGLERFAWITKGTPTAYDC- 265

Query: 248 LFKHLIQASEQVTGMKYEGN-----------------NIVNHR----------------- 273
            F  +     +  G+  +                   ++++ R                 
Sbjct: 266 CFGPITNHLFEKIGIDSDSEMLRKYFTAIAKNLEIHEDLIDVRKHAVNATGLSQDQINRI 325

Query: 274 --------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
                   +I DHLR+  F I DG LP+N G GY LR ++RR       +     +   L
Sbjct: 326 ITPLEGMYLIADHLRTLIFAITDGALPSNVGGGYNLRMMLRRINGTMDRMNLKLDI-DEL 384

Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385
           +      +   YPEL + +  ++   + E ER+ ++  R   +   +        +   D
Sbjct: 385 VDMHIDYLRDTYPELDEKRDDVKTIFKLESERYVESKVRMGKMASRLKDKGRAPTV---D 441

Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445
               LY++ G+  + +++I     +      SF   L +     +  +L           
Sbjct: 442 ELITLYESDGITPEYLKEI----NVISEIPSSFYAKLSDLHQSDKKKALES--------- 488

Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505
               E    T+ + Y                      D     + ++K            
Sbjct: 489 -LPLENIPETEMLFY--------------------KDDPMEFDAKVLKVFDS-------- 519

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                  VV D+T FYA  GGQ  D G   G     ++ DV K   G+ VH   +E  + 
Sbjct: 520 ------SVVLDRTSFYARGGGQEPDHGVIAG----AKVIDVNK-DGGVIVH--KLEGQVP 566

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +   ++   +D   R  ++ NH++TH+L+ +  ++LGS + Q+ +    D  R D+TH  
Sbjct: 567 KEGDTVSCKVDATRRANITKNHTSTHILNSSSRSVLGSWIWQHSAFKEADHARLDITHHS 626

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEY 683
            +T  ++  IE   N+I+A+++ V     +R  A       +   G      VR+VS+E 
Sbjct: 627 SLTDQQVADIERKANEIVAKDMTVSIENYDRGTAEQKYGFKIYQGGVVPVKSVRIVSIE- 685

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                     CGGTHV  T ++ L+ I     I+ G+ R+E ++G  AR ++  Q+  ++
Sbjct: 686 ----DFDVEACGGTHVKKTRDVELIKITKTKRIQDGVVRLEFVSGPTAREYVKQQE--IE 739

Query: 744 SLASFLKVSQGNVVGR------------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 +  Q     +            +  + E+    +      ++++NV+ +     
Sbjct: 740 RAQRLQEEKQKEFKDKQREEEKQKAKEKIPALLEQVSAQKSSAIIDEIEINVDKIKSCFT 799

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                             K ++     K     + +          V+    ++     N
Sbjct: 800 NS----KQYDEFFHMNFGKRLV-----KDNPNSVYVGIFESGPTVRVIAYAGDEASKGKN 850

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           A  +A+  A++L GG GGG    AQ GG + +K ++AI    S +
Sbjct: 851 AGIIAKSVAEIL-GGAGGGDAKFAQGGGKDTSKINEAITKAKSMI 894


>gi|225166099|ref|ZP_03727831.1| Alanine--tRNA ligase [Opitutaceae bacterium TAV2]
 gi|224799655|gb|EEG18152.1| Alanine--tRNA ligase [Opitutaceae bacterium TAV2]
          Length = 543

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 215/426 (50%), Gaps = 53/426 (12%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56
              + IR +FL++F K GH ++PS+SL+P + P L+FTN+GM  F  IF G   P     
Sbjct: 1   MTSAEIRQSFLDYFAKQGHTIVPSASLLP-DYPGLLFTNAGMNQFVPIFLGDRAPDVSHW 59

Query: 57  ------VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110
                         QKC+RAGGKHNDL++VG    HHT FEMLGN+SFG YFK  ++   
Sbjct: 60  AGVRPAKDTRAADTQKCIRAGGKHNDLEDVGYDTYHHTMFEMLGNWSFGDYFKRESLTWG 119

Query: 111 WDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWKKISGL----SADKIIRITT 156
           W+LLTK + +  +RL+ TVY          + D EA  +W  +        A  I+    
Sbjct: 120 WELLTKVWGIPAKRLFATVYAPDKTKGDPAEFDHEAAAIWTDLFRAAGLDPAVHIVHGNK 179

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
            DNFW M +TGPCGPCSEI F+         G    +    R IEIWN VF+QF      
Sbjct: 180 KDNFWMMGDTGPCGPCSEIHFNLLPSDDEAAGRALVNSSSPRCIEIWNHVFIQFNANADG 239

Query: 215 ERFILPKMSIDTGMGLERMATV---------LQEKTNNYDIDLFKHLIQASEQVTGMKY- 264
               L    +DTGMG ER+A +            + +NY+ D+F  L     +++G  Y 
Sbjct: 240 TFAPLAAKHVDTGMGFERVAGIHATTHGFKDFSREPSNYNADVFTPLFAKVAELSGKTYR 299

Query: 265 ---------------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
                          +    +  RV+ DH R+ S  IADGI P NEGR YV+RRI+RR +
Sbjct: 300 ETVPATDADRKNLTEQERTDIAFRVLADHARTVSCAIADGIHPGNEGRNYVIRRILRRGI 359

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            Y   LG        L+  +   +G  +PEL+  + +I   +RSE+E FG+ L++GL   
Sbjct: 360 LYGNKLGLKTGFFEQLVAPVVESLGPVFPELVAQQDIIRRVIRSEEESFGRALNKGLEEF 419

Query: 370 DGVLSH 375
              L+ 
Sbjct: 420 QRALAR 425


>gi|296242680|ref|YP_003650167.1| alanyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
 gi|296095264|gb|ADG91215.1| alanyl-tRNA synthetase [Thermosphaera aggregans DSM 11486]
          Length = 908

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 187/929 (20%), Positives = 359/929 (38%), Gaps = 164/929 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F    GH ++    ++      L    + ++ F+   T G   P +  +
Sbjct: 59  SLQEVREKFINFLVSKGHGVVDPYPVLARWRNDLYLNIASIIVFQPAVTEGIVDPPHNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R     +D+DNVG T  RH T FEM G  +F       Y+ E  I    +   
Sbjct: 119 VIIQPSIRL----SDIDNVGLTFGRHLTSFEMGGMHAFNKPGKMIYWVEGIIDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D   L                                + +W     G  GP  E+
Sbjct: 175 KEIGIDLEDLV-----------------------------FKEGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LV M ++     +    P + +D G G+ER+  
Sbjct: 204 LVDG------------------MELATLVHMMYKTV-DGKYIENPVLVVDCGYGIERITW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV------------------- 276
             Q+    +   ++  L+   + V G++   ++++   V +                   
Sbjct: 245 FTQKSPTGFHA-IYGRLVDEYKDVLGVEEPPHDVLKKAVYLLSDKELNSVAEYVKALEEY 303

Query: 277 -------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                              DH+R+ S +++DGI+P+N G GY+ R ++RR       LG 
Sbjct: 304 GFSEHTASFTKIIYLYGSLDHVRTISLMLSDGIVPSNSGEGYLARLVLRRLFRNLVNLGV 363

Query: 318 TEPLMMHLLPALCTE------MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
               +  ++  L  +          Y +  + +  I + +  E  +F  ++ RG+ ++D 
Sbjct: 364 ESNKLADIVQELVDKQIKYWKNDYIYGKFEKHRDYILDVVALEANKFVDSVYRGVEIVDK 423

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
              +L + + L  +   ++YD+HG+P + + +    +G+       F   + ++ S A  
Sbjct: 424 ---YLKRKKALGEEDLIEIYDSHGIPPEFVVERARGKGVEVRVPGDFYSKIAQRHSAAPL 480

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     E                   L + ++   E  +V  Q P       +++ 
Sbjct: 481 VKEKEHEFPEE-------------------LAKWAEGFPETVRVFHQDP---YATSINAK 518

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           V  ++                V+ D+T  Y  AGGQ  DTG  + +G    +  V K   
Sbjct: 519 VLGVLGN-------------YVILDRTIMYPWAGGQDHDTGVLVFNGKAYPVKYVGK-IG 564

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G+ VH    + G  +    + + I++  R +L  +H+ATH++  A   ILG HV Q G+ 
Sbjct: 565 GVIVHELEEKPG-FKPGDEVEVKIEWFRRYRLMRHHTATHVVLAAARKILGDHVWQAGAE 623

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            T +  R D+TH KP+T  E+  IE+  N II   + +    M + +A +     +   G
Sbjct: 624 KTVEKGRLDITHHKPLTRKEIAEIEELANKIIDSRIQLRFNYMGKFEAESKYGLKIYQGG 683

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             Y+  +R+V +   D        C GTH+ +T EI  + I++   I+ G+ R+E + G 
Sbjct: 684 AVYSPVLRIVEIPGWDA-----QACFGTHLQNTAEIGGVKIINAERIQDGVIRLEFVAGT 738

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLS 787
           R        +E+ +     +     ++V    ++ E   +L+   A  +R L   +   +
Sbjct: 739 RLAELARNMEEEREKALEAMGSPHKDIVVAAGKLRESLSRLEETVATYRRILADALVSNA 798

Query: 788 CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            +    V  +   ++E    D K +K+V++ L  K ++  ++  G        + +   +
Sbjct: 799 LNTKRVVCGVETTLAETPVEDEKLVKTVLEDLSLKHKTLAVVFTG----DMVEIAVDPGK 854

Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
            +    N + ++     +  G  GGGR  
Sbjct: 855 AVEKGINLLKISEALRSL--GAKGGGRSD 881


>gi|147920593|ref|YP_685610.1| alanyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
 gi|121690502|sp|Q0W5Q9|SYA_UNCMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110621006|emb|CAJ36284.1| alanyl-tRNA synthetase [uncultured methanogenic archaeon RC-I]
          Length = 875

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 202/900 (22%), Positives = 359/900 (39%), Gaps = 168/900 (18%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
               T+++ F++ G+  L     +      L F  +G+  F+     G+ +P  +AV   
Sbjct: 78  EAWDTYVKTFEQWGYVPLERYPTVCRWYEDLYFVAAGINDFQPYVVSGEIEPPARAVLEP 137

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q C+R     ND+DNVG T RH+T F M+G  +F       YFKE  I      LT+   
Sbjct: 138 QFCLR----FNDIDNVGITGRHYTGFIMVGQHTFNTPEKHVYFKEEGIGQIQHFLTQGL- 192

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                                    G+ A +I+     ++ W+    G  GP  E F   
Sbjct: 193 -------------------------GIPAHEIVFH---EDVWAGG--GNFGPSIEYF--- 219

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                           R +E+ N V+MQ+EQ        L    ID G GLER A   Q 
Sbjct: 220 ---------------SRGLELGNQVYMQYEQTPDGGFKELRTKVIDMGAGLERWAWFSQG 264

Query: 240 KTNNYDIDLFKHLIQASEQVTG-----------MKYEG---------------------- 266
              +YD   F   ++     TG            KY G                      
Sbjct: 265 CPMSYDA-TFPKTMEFIYNKTGYRADPVFHAKFAKYAGILNVEEIEDVGSAWNDVAKSME 323

Query: 267 ----------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                       I    V+ DH RS    I DG LP+N G GY LR ++RR         
Sbjct: 324 MDLGELKDMVYKIRAQYVLADHTRSLLVAIHDGALPSNVGGGYNLRNLLRRCWSLIDQYQ 383

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
           +    +  +  +   E GS Y EL      + + +  E +R+ ++  +   ++  ++   
Sbjct: 384 WDID-LNDIFRSHIDEFGSWYTELK-DYGSLFDIIDVERKRYEESRRKSKDIIKRMV--- 438

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
              E L  D   +LYD+ G+  +++++         +    F   ++ +           
Sbjct: 439 KAKETLTADKLVELYDSQGISPELIKEAKPD----VVIPEDFYARVQARH---------- 484

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
            +  T KI  +  +    T+ + Y+  R  KF     K+L                    
Sbjct: 485 DAKATRKIEVNETQGLPKTEPMYYEKPREFKFEANVVKLLTPTK---------------- 528

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
                           +V D+T FY   GGQ GDTG   G    +++ DV K+ +G+ +H
Sbjct: 529 ----------------LVLDRTLFYPLGGGQAGDTGFVNG----IKVKDVYKQ-DGVIIH 567

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
             ++E  +      ++  +D   RR L+ +HSATH++++A   +LG HV Q G+  TP+ 
Sbjct: 568 --VLESPMPPDTTKVIGEVDEARRRILAAHHSATHIVNYAARKVLGDHVWQAGAEKTPEK 625

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYND 674
            R D+TH + +T  +L+ IE   ND+  + +PVV R M+R +A    +  +   G     
Sbjct: 626 ARLDITHYESLTFQQLQEIERVANDLAMKQIPVVVREMSRTEAEMEYSMRIYQGGAVPGK 685

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R++ ++      +    CGG HV +T ++  + ++S   I+ G+ R+E  +   A S 
Sbjct: 686 ILRIIVIDG-----YDVEACGGIHVDNTSKVGFIKMLSSERIQDGVVRLEFKSLDNAVSE 740

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   +  L+ ++    V   ++    +  + E+++L   + + + +L  + ++       
Sbjct: 741 IQHHESILREVSDLWGVGYDDIPKTAQRFFNEWKELGKKNKELQAELVQQTIAAALGKPG 800

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           + +  +++  D   L   + + +K+ +   ++  G +     S LI V E L + +  VD
Sbjct: 801 DTVDVVVTGADFGTLMKAVGSFKKEFKGRTVIFRGDNFAYGYSDLINVKEKLAEGYVNVD 860


>gi|50510863|dbj|BAD32417.1| mKIAA1270 protein [Mus musculus]
          Length = 736

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 188/744 (25%), Positives = 320/744 (43%), Gaps = 68/744 (9%)

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-- 264
           Q  ++      +LP+  +DTGMGLER+  VLQ K + YD DLF  L+ A  Q  G     
Sbjct: 1   QHYREADGSLQLLPQRHVDTGMGLERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYS 60

Query: 265 -------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLG 316
                  EG     +RV+ DH+R+ S  IADG+ P   G   VLRRI+RRA+ Y+  +L 
Sbjct: 61  GRVGAADEGRIDTAYRVVADHIRTLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQ 120

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
                +  L+P +   +GSAYPEL +  + I   +  ++  F  +L RG  ++D  +  L
Sbjct: 121 APPGFLGSLVPVVVETLGSAYPELEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRL 180

Query: 377 GKDEILNGDVAF--KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434
           G  ++   +VA+   L    G+PLD+++ +L  +G+  +D     Q  +++   A+  + 
Sbjct: 181 GPSDLFPAEVAWSLSLSGNLGIPLDLVELMLEEKGVK-LDTAGLEQLAQKE---AQHRAQ 236

Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494
              +   +++   +     A + +    +  +    +    L      +     + +++ 
Sbjct: 237 QAEADQEDRLCLDVH----ALEELHRQGIPTTDDSPKYNYTLHPNGDYEFGLCEARVLQL 292

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGI 553
             + G  V    +GQ+  ++ D+T FYAE GGQ  D G  +  G +  +  V   +  G 
Sbjct: 293 YSETGTAVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGG 352

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F+ H  +    L+    + L +D ++R      H+ATHLL  AL   LG    Q GS + 
Sbjct: 353 FILHEAMAPERLQVGDQVQLYVDKRSRPG---KHTATHLLSWALRQTLGPTTEQRGSHLN 409

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           P+ LRFDV     +T+ +L+++E  V +++ Q+ PV    +             L   Y 
Sbjct: 410 PERLRFDVATQTLLTTEQLRTVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYP 469

Query: 674 DRVRVVS----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           D VRVVS             +     S  LC GTH+ STG +  L I+ E  +  GI R+
Sbjct: 470 DPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRL 529

Query: 724 EAITG---QRARSHLMGQDEKLKSLASFLKVSQGNVVG--RV------------------ 760
            AITG   Q+AR       +++++ +  L     ++    R+                  
Sbjct: 530 LAITGEQAQQAREVGQSLSQEVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQ 589

Query: 761 ---EEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKS 811
              +E+    + LQ     A RKL+         ++    ++   +   +S      L  
Sbjct: 590 WQRQELQTTLKMLQRRANTAIRKLEKGQATEKSQELLKRHSEGPLIVDTVSAESLSVLVK 649

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           V+  L K+  S  ++L+             V +D    F A   A      +GG   G R
Sbjct: 650 VVRQLCKQAPSISVLLLSPQPTGSVLCACQVAQDATPTFTAEAWALAVCSHMGGKAWGSR 709

Query: 872 PHMAQSGGPNGNKADQAIAGVASF 895
             +AQ  G   +  + A+    ++
Sbjct: 710 -VVAQGTGHTAD-LEAALGTARAY 731


>gi|13541650|ref|NP_111338.1| alanyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|14325050|dbj|BAB59975.1| tRNA synthetase Ala [Thermoplasma volcanium GSS1]
          Length = 878

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/865 (21%), Positives = 329/865 (38%), Gaps = 180/865 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +S +R  F +FF+K GH+LL    ++P     ++  N+ +  F+   T G  KP    +
Sbjct: 63  TLSEMRKAFFDFFEKRGHKLLEPYPVVPRWREDVLLVNASIYDFQPHVTSGIVKPPGNPI 122

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + +F       Y+KE  ++ +++ LT 
Sbjct: 123 VMSQPSIRM----NDVDLVGVTGRHLTSFEMLCHDAFNSKNDFVYWKEETVRYSYEFLTD 178

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D   +                             T  +  WS    G  G   E+F
Sbjct: 179 GLGIDGSLI-----------------------------TYKEKPWSGG--GNAGNALEVF 207

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
                              R +E+  LVFM  ++  + E          +    +DTG G
Sbjct: 208 V------------------RGLEVATLVFMDMKEDQEGEVEIEGTRYTKMDMQIVDTGYG 249

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT----------------------------- 260
           LER+  + Q     Y   ++  +I    + +                             
Sbjct: 250 LERLTWLSQGTPTVYQA-IYPEIIDYVLENSYVESIDNEFLSDVVRVSVMREPYDEAFVL 308

Query: 261 ---GMKY--------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              G KY        +   + +  V++DH RS   +    ++P+N   GY+ R ++RR++
Sbjct: 309 STLGEKYPNALERFEKAKKVRDIFVLIDHARSLMHMFEAFVIPSNVKVGYLARLLIRRSI 368

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ-----AKLLIEETLRSEDERFGKTLDR 364
              + +G+   L           +   Y EL           I++ L  E +++ +   R
Sbjct: 369 RAQKNIGFKGSL--------INLIERNYNELKDIVKPLPIEFIKDVLSIEMQKYSELEKR 420

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G  +++ +   L   + ++ D    LYD+HG+  D++  +   +GL  +   +F+ A+  
Sbjct: 421 GQQVIEKI---LKTKKSIDIDDLVLLYDSHGISPDVVAAMAAEKGLKVMIPPNFH-AMVI 476

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
            R     H        + K++ ++      T+ + YD     +F                
Sbjct: 477 SR-----HEKKSALKKSAKVYPNI-----ETRTLYYDDSTMREFTG-------------- 512

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                  +    +  E            V+ D+T FY E GGQ  D G     G ++ + 
Sbjct: 513 -------LVMYSKGNE------------VILDKTAFYPEGGGQPADHGYFEFKGKKINVL 553

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DVQK    I         G +   + +   ID++ R +L ++H+ATHLL   L  ILG H
Sbjct: 554 DVQKHGNAIVHKL----DGEIPEGVRVKGVIDWERRSRLMVHHTATHLLLGVLRDILGDH 609

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q+G          D+TH K I    +K IE  + ++I +  PV  + ++   AI    
Sbjct: 610 VWQSGVQKDVSESHLDITHYKRIDEDTIKKIEHRIFELITEGRPVSVKNLDWYMAIGKYG 669

Query: 665 AALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             L   G   + +VRVV +E  D        CGGTH+ +   I +L I    +I+  I R
Sbjct: 670 FRLFEGGVPLSPKVRVVEIEGVDA-----EGCGGTHLKNISSIGVLKIKKIEAIQENIYR 724

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I  + G  A        +    +++  K +       VE    E  K++      + +L 
Sbjct: 725 ITFVAGVPALELFEDSYDLAYRVSNISKKNIDQAGDFVENTVRELSKIKRDLDSARTKLI 784

Query: 783 VEDLSCHKIADVNFMSHIISEVDSK 807
            E++   K   +      I  ++++
Sbjct: 785 EEEI--RKSNSIKLGEKEIPAIEAE 807


>gi|22096202|sp|Q97AH7|SYA_THEVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
          Length = 876

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/865 (21%), Positives = 329/865 (38%), Gaps = 180/865 (20%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            +S +R  F +FF+K GH+LL    ++P     ++  N+ +  F+   T G  KP    +
Sbjct: 61  TLSEMRKAFFDFFEKRGHKLLEPYPVVPRWREDVLLVNASIYDFQPHVTSGIVKPPGNPI 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTK 116
              Q  +R     ND+D VG T RH T FEML + +F       Y+KE  ++ +++ LT 
Sbjct: 121 VMSQPSIRM----NDVDLVGVTGRHLTSFEMLCHDAFNSKNDFVYWKEETVRYSYEFLTD 176

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              +D   +                             T  +  WS    G  G   E+F
Sbjct: 177 GLGIDGSLI-----------------------------TYKEKPWSGG--GNAGNALEVF 205

Query: 177 FDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMG 229
                              R +E+  LVFM  ++  + E          +    +DTG G
Sbjct: 206 V------------------RGLEVATLVFMDMKEDQEGEVEIEGTRYTKMDMQIVDTGYG 247

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT----------------------------- 260
           LER+  + Q     Y   ++  +I    + +                             
Sbjct: 248 LERLTWLSQGTPTVYQA-IYPEIIDYVLENSYVESIDNEFLSDVVRVSVMREPYDEAFVL 306

Query: 261 ---GMKY--------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              G KY        +   + +  V++DH RS   +    ++P+N   GY+ R ++RR++
Sbjct: 307 STLGEKYPNALERFEKAKKVRDIFVLIDHARSLMHMFEAFVIPSNVKVGYLARLLIRRSI 366

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ-----AKLLIEETLRSEDERFGKTLDR 364
              + +G+   L           +   Y EL           I++ L  E +++ +   R
Sbjct: 367 RAQKNIGFKGSL--------INLIERNYNELKDIVKPLPIEFIKDVLSIEMQKYSELEKR 418

Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424
           G  +++ +   L   + ++ D    LYD+HG+  D++  +   +GL  +   +F+ A+  
Sbjct: 419 GQQVIEKI---LKTKKSIDIDDLVLLYDSHGISPDVVAAMAAEKGLKVMIPPNFH-AMVI 474

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
            R     H        + K++ ++      T+ + YD     +F                
Sbjct: 475 SR-----HEKKSALKKSAKVYPNI-----ETRTLYYDDSTMREFTG-------------- 510

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
                  +    +  E            V+ D+T FY E GGQ  D G     G ++ + 
Sbjct: 511 -------LVMYSKGNE------------VILDKTAFYPEGGGQPADHGYFEFKGKKINVL 551

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           DVQK    I         G +   + +   ID++ R +L ++H+ATHLL   L  ILG H
Sbjct: 552 DVQKHGNAIVHKL----DGEIPEGVRVKGVIDWERRSRLMVHHTATHLLLGVLRDILGDH 607

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V Q+G          D+TH K I    +K IE  + ++I +  PV  + ++   AI    
Sbjct: 608 VWQSGVQKDVSESHLDITHYKRIDEDTIKKIEHRIFELITEGRPVSVKNLDWYMAIGKYG 667

Query: 665 AALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             L   G   + +VRVV +E  D        CGGTH+ +   I +L I    +I+  I R
Sbjct: 668 FRLFEGGVPLSPKVRVVEIEGVDA-----EGCGGTHLKNISSIGVLKIKKIEAIQENIYR 722

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I  + G  A        +    +++  K +       VE    E  K++      + +L 
Sbjct: 723 ITFVAGVPALELFEDSYDLAYRVSNISKKNIDQAGDFVENTVRELSKIKRDLDSARTKLI 782

Query: 783 VEDLSCHKIADVNFMSHIISEVDSK 807
            E++   K   +      I  ++++
Sbjct: 783 EEEI--RKSNSIKLGEKEIPAIEAE 805


>gi|119953017|ref|YP_945226.1| alanyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|119861788|gb|AAX17556.1| alanyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 593

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/470 (34%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  ++EFF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRKKYIEFFKSKGHCEIAGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVKYSFEFLTSPDYLN 115

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + + RLY++V++ DE      +   +W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 ISKDRLYVSVFEGDENIPRDTKTASVWESL-GIPKDRIFYLSREHNFWGPVGNVGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G+         +    +Y EIWN VFMQ+++        L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGKEKCSNECDITCSCGKYFEIWNNVFMQYKRDENGNYEELNRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D FK +I   E+++G  Y  N  +  + R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFKPIIDKIEKISGKIYGQNLEDDKSIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRRI+RRA+ YA+ LG    ++  L+  +     S Y EL + K  I+
Sbjct: 295 AVLPSNVGQGYVLRRIIRRAIRYAKKLGMESHVLADLVDPVEEIYKSFYKELTENKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L +E+++F KTL  G      ++ HL   +++ G++AFKLYDT+G P +I +++    
Sbjct: 355 AELNTEEKKFFKTLRHGEQEFIKLIQHLS-SKLIPGEIAFKLYDTYGFPYEITEELATEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G + ID   F +   + R  ++     +  G      +   + + AT  +
Sbjct: 414 GFS-IDKTGFEEHFRKHRKVSKKGGDKVFKGGLADCTYETTKLHTATHLL 462



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H     +   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFEEHFRKHRKVSKKGGDKVFKGGLADCTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD +H   +T  E+K +ED VN  I   L V   +M+ +DA+A GA AL G K
Sbjct: 481 ITAERLRFDFSHPYKMTDDEIKRVEDMVNLQIKNKLSVNRTVMSLDDALAKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y + V V  ++       S  +CGG HV +T E+ +  I  E +  +G+RRI+ I
Sbjct: 541 YEEIVSVYEIDG-----FSIEVCGGPHVKNTSELGIFKIQKEQASSSGVRRIKGI 590


>gi|187918093|ref|YP_001883656.1| alanyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|205829992|sp|B2RZT0|SYA_BORHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|119860941|gb|AAX16736.1| alanyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 593

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRKKYIDFFKSKGHCEIAGKSLIPDNDSTVLFNTAGMQPLVPYLLGEMHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVKYSFEFLTSPNYLN 115

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + + +LY++V++ DE      E   +W+ + G+  D+I  ++   NFW  +  TGPCGP 
Sbjct: 116 ISKDKLYVSVFEGDESIPRDTETANVWESL-GIPKDRIFYLSREHNFWGPVGNTGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G+         +    +Y EIWN VFMQ+++        L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGKEKCSVRCDITCSCGKYFEIWNNVFMQYKRDENGNYEELKRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D FK +I   E+++G  Y  N  +  + R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFKPIIDKIEKISGKIYGQNLEDDRSIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRRI+RRA+ YA+ LG    ++  L+ ++     S Y EL + K  I+
Sbjct: 295 AVLPSNIGQGYVLRRIIRRAIRYAKKLGMESYVLADLVDSVEEIYKSFYKELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L  E+E+F KTL  G      ++  L   + + GD++FKLYDT+G P +I +++    
Sbjct: 355 AELNVEEEKFFKTLRHGEQEFIKLIQQLS-SKSIPGDISFKLYDTYGFPYEITEELATEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G + ID   F +  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GFS-IDKAGFEEHFKKHQEVSKKGGDKVFKGGLADCTYETTKLHTATHLL 462



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 89/175 (50%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    +    +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFEEHFKKHQEVSKKGGDKVFKGGLADCTYETTKLHTATHLLHKALQLVLGEHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  H   +T  E+K +ED VN  I   L V   +MN +DA+A GA AL G K
Sbjct: 481 ITAERLRFDFNHPYKMTDDEIKQVEDMVNLQIKNKLSVKRSVMNLDDALAKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y D V V  ++       S  +CGG HV +TGE+    I  E +  +G+RRI AI
Sbjct: 541 YEDIVSVYEIDG-----FSIEVCGGPHVKNTGELGTFKIQKEQASSSGVRRIRAI 590


>gi|111115044|ref|YP_709662.1| alanyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|123145760|sp|Q0SNU2|SYA_BORAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|110890318|gb|ABH01486.1| alanyl-tRNA synthetase [Borrelia afzelii PKo]
          Length = 594

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 261/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT  +  +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSEYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + + RLY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDRLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSINCNVTCSCGKYFEIWNNVFMQYNKDENGNYMELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEFISGKIYGQKEDDDRCIRIISDHIKAACFILADSS 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 GVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLS-SKTIPGDIAFKLYDTYGFPYELTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID   FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-DIDKSGFNEYFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   +    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEYFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVKQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HSK +T  E+K +ED VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSKKMTDDEIKKVEDIVNLQIKNSLSVKKSIMELSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y++ V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDNLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|196018718|ref|XP_002118857.1| hypothetical protein TRIADDRAFT_62857 [Trichoplax adhaerens]
 gi|190577957|gb|EDV18657.1| hypothetical protein TRIADDRAFT_62857 [Trichoplax adhaerens]
          Length = 510

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 204/607 (33%), Positives = 302/607 (49%), Gaps = 99/607 (16%)

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+LP+NEGRGYVLRRI+RRAM +   +GY   L+  L P    EM   Y EL +A  LI 
Sbjct: 1   GVLPSNEGRGYVLRRILRRAMRHIHNIGYKGNLLSKLAPVFINEMNDIYSELEEASDLII 60

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            TL  E+ERF +TL  G+  L   ++ L +   LNG   FKLYDT+G PLD+  DIL  +
Sbjct: 61  STLDIEEERFRETLRIGMKYLKEEINTLSEGASLNGSKVFKLYDTYGFPLDLTADILKDK 120

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
            +  +D   F  A++EQ+ +ARA   G G      IWF + +K+G T+FI          
Sbjct: 121 KIK-LDYDGFESAMQEQKRKARAAWSGSGEKDFSSIWFDIYDKFGGTEFI---------- 169

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            K+D   +               V+AI++ G++V++A +G+ V +V DQT FYAE+GGQ+
Sbjct: 170 RKDDGSYV-------------GKVQAIIKDGKLVQKASTGEDVIIVTDQTTFYAESGGQI 216

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           GD G    +    ++ D +K A+ I  H+  + +  +     +   +DY  R  +  NHS
Sbjct: 217 GDRGYINDN----EVYDTKKFADKIHGHYVCL-KNDISIGDEVKFLVDYNLRNLIKANHS 271

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH+LH AL  ILG HV+Q GS ++ D LRFD  H+K +T  E+ ++E  VN II  N  
Sbjct: 272 ATHILHFALREILGKHVTQKGSLVSYDKLRFDFAHNKAMTKDEIINVEKRVNSIIMLNSS 331

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           + T +M+ + A  SGA AL G KY++ VRVVS+        S  LCGGT V +TG+I   
Sbjct: 332 ISTNLMSIDAAKKSGAMALFGEKYDEEVRVVSMG------ESIELCGGTRVKNTGDI--- 382

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
                                     L   +E         K     ++ ++EEI     
Sbjct: 383 ------------------------KDLAKSNE---------KYKNELLLNKLEEI----- 404

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
                                 + D+  +   I   D   LK + D L+ K  S II++ 
Sbjct: 405 ---------------------NVKDIRILLLKIYN-DKVNLKGIYDNLKSKKTSIIILIN 442

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
                KK S+LI VT+D+ +++NA +L +    ++  G GGG    AQ+ G N +  D+ 
Sbjct: 443 TDKNNKKTSLLIGVTKDISNKYNAKELIQSCFSIIN-GKGGGNSEYAQASGDNIDVEDKI 501

Query: 889 IAGVASF 895
           +  +  +
Sbjct: 502 LDKIKEY 508


>gi|203287678|ref|YP_002222693.1| alanyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|201084898|gb|ACH94472.1| alanyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 592

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 168/567 (29%), Positives = 289/567 (50%), Gaps = 35/567 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRAKYIDFFKSKGHCEIVGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVEYSFEFLTSPHYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + + +LY++V++ D++         +W+K+ G+S D+I  ++   NFW  +   GPCGP 
Sbjct: 116 ISKDKLYVSVFEGDKDIPRDVKTADIWEKL-GISKDRIFYLSREHNFWGPVGNVGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G          +    +Y EIWN VFMQ+ + N      L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGIDKCSNTCDITCSCGKYFEIWNNVFMQYNKDNDGNYEELKRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D F+ +I+  E+++G  Y  N  +    R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFRPIIKQIEKISGKVYGDNLEDDRAIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y E+ + K  I+
Sbjct: 295 SVLPSNVGQGYVLRRLIRRSIRYAKKLGMESHCLADLVDSVEDIYKSFYKEITEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L  E+E+F KTL  G      ++  L   +++ GD++FKLYDT+G P +I +++    
Sbjct: 355 NELNIEEEKFFKTLRYGEQEFVKLIHQLS-SKLIPGDISFKLYDTYGFPYEITEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF--------IGY 460
           G +  D   F +  ++ +  ++  S  +  G      +   + + AT          +G 
Sbjct: 414 GFSM-DREGFEEHFKKHQEVSKKGSDKVFKGGLADCSYETTKLHTATHLLHKALQLVLGD 472

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV----QQGEIVEEAVSGQKVEVVFD 516
            + +    +   R       P  +T+     V+ IV    +    V++++   +  +V  
Sbjct: 473 HVRQKGSNITSQRLRFDFSHPCKMTDDEIKKVEDIVNLQIKNKLSVKKSIMSLEDALVKG 532

Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQI 543
               + E    +        DG  +++
Sbjct: 533 AIALFGEKYEDIVSVYEI--DGFSIEV 557



 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/146 (44%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ATHLLH AL  +LG HV Q GS IT   LRFD +H   +T  E+K +ED VN
Sbjct: 450 YETTKLHTATHLLHKALQLVLGDHVRQKGSNITSQRLRFDFSHPCKMTDDEIKKVEDIVN 509

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I   L V   IM+ EDA+  GA AL G KY D V V  ++       S  +CGG HV+
Sbjct: 510 LQIKNKLSVKKSIMSLEDALVKGAIALFGEKYEDIVSVYEIDG-----FSIEVCGGPHVN 564

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI 726
           +T E+    I  E +  +GIRRI AI
Sbjct: 565 NTSELGTFKIQKEQASSSGIRRIRAI 590


>gi|216264058|ref|ZP_03436052.1| alanyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|215980102|gb|EEC20924.1| alanyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 594

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/470 (32%), Positives = 261/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT  +  +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSEYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + + RLY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 ISKDRLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSINCNVTCSCGKYFEIWNNVFMQYNKDENGNYMELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD-- 288
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEFISGKIYGQKEDDDRCIRIISDHIKAACFILADSS 294

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
           G+ P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 GVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLS-SKTIPGDIAFKLYDTYGFPYELTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID   FN+  ++ +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-DIDKSGFNEYFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   +    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEYFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVKQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HSK +T  E+K +ED VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSKKMTDDEIKKVEDIVNLQIKNSLSVKKSIMELSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y++ V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDNLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|167957608|ref|ZP_02544682.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7c]
          Length = 625

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 169/615 (27%), Positives = 281/615 (45%), Gaps = 67/615 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N   IR  +LEF Q+NGH ++  + LI  NDPT +FT SGM P      GQ+ P    +
Sbjct: 1   MNAQEIRQKYLEFCQRNGHAIIERAPLILHNDPTTLFTGSGMQPLLPYLLGQDHPQGTKL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q C+RA     D+++VG  NRH TFFEMLGN+S G YFK + I+  ++ LT+   LD
Sbjct: 61  ADSQTCLRAQ----DIEDVG-DNRHTTFFEMLGNWSMGEYFKRQQIEWFFEFLTEIVGLD 115

Query: 122 QRRLYITVY--------DEDEEAFKLWKKIS---------------------GLSADKII 152
             ++Y++ +          D+EA ++W+++                      G+   +I 
Sbjct: 116 PHKIYVSCFIGDDKNNIPRDDEAAQIWQEVFAKKGIKAKIVELDSAENGDKLGMQGGRIF 175

Query: 153 RITTNDNFWSMAET-------GPCGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWN 202
                +N+WS            PCGP SE+F+D GE       G    + +  R++EI N
Sbjct: 176 FYNDKENWWSRGGGIDSTPIGDPCGPDSEVFYDFGEQHHDASFGQAHPASDSGRFMEIGN 235

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            VFMQ+ + +      L + ++D G GLER+A    +  + + I L + +I   E ++G 
Sbjct: 236 QVFMQYRRLDDGSFEPLKRKNVDFGGGLERIAAAAIDSPDVFKISLLRPIIDKLESLSGK 295

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
            Y+ +   + RVI DHLR+++FL  DG +P+N+ +GYV+RR++RRA+ Y+  LG  +  +
Sbjct: 296 DYDTHTG-SMRVIADHLRAATFLAVDGCVPSNKEQGYVMRRLLRRAIRYSFDLGIEQNFL 354

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             ++P +     + +PE+ + +  I   L  E++ F +TL +GL  +   +     D+ L
Sbjct: 355 EEVVPVIADLYEADFPEVKENREQIIAVLVKEEKAFRQTLRKGLRQMQHYI-----DDGL 409

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAHSLGLGSGT 440
            G+  F LYDT G P+++  +    +G+   D     F+  + EQR R++    G  SG 
Sbjct: 410 TGEELFTLYDTFGFPVELSTEEAYKQGIKLSDNWRAEFDARMAEQRQRSKTARKGQFSGG 469

Query: 441 TEKIWFSLKEKYGATQFIG---YDLLRGSKFMKEDRKVLCQKPPIDLTNG---------V 488
            E       + + AT  +G     +L+     +    +  ++   D  +          V
Sbjct: 470 LEGHDPIHLKYHTATHLLGAALRKVLKVPDLQQHGSNITSERLRFDFNHDKLTSEEKQAV 529

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
              V A +     V  AV      +       + E  G   D       G    +   + 
Sbjct: 530 EDQVNAWIDADLPVSFAVYPTNEALKMGAIGAFGERYG---DEVKVYSIGEGDNVVSFEV 586

Query: 549 KAEGIFVHHAIVERG 563
                  H   +  G
Sbjct: 587 CGGPHVEHTGTLAEG 601



 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/149 (40%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 583 LSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
               H+ATHLL  AL  +L    + Q+GS IT + LRFD  H K +TS E +++ED VN 
Sbjct: 477 HLKYHTATHLLGAALRKVLKVPDLQQHGSNITSERLRFDFNHDK-LTSEEKQAVEDQVNA 535

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I  +LPV   +    +A+  GA    G +Y D V+V S+  E   V S  +CGG HV  
Sbjct: 536 WIDADLPVSFAVYPTNEALKMGAIGAFGERYGDEVKVYSIG-EGDNVVSFEVCGGPHVEH 594

Query: 702 TGEI----MLLYIVSESSIRAGIRRIEAI 726
           TG +        I  E S  AGIRRI+A+
Sbjct: 595 TGTLAEGGKRFKINKEESSSAGIRRIKAV 623


>gi|48477495|ref|YP_023201.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|74568036|sp|Q6L1Z4|SYA_PICTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|48430143|gb|AAT43008.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 870

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/845 (20%), Positives = 315/845 (37%), Gaps = 172/845 (20%)

Query: 3   NVSSIRTTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           NV  +R  F++FF+ +   H+ +    ++P     ++  N+ +  F+   T G  KP   
Sbjct: 56  NVDEMRDEFIKFFENDSLPHKFVEPYPVVPRWRDDVLLVNASIYDFQPQVTSGLAKPPGN 115

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      D+D VG+T RH T FEML + SF       Y+K+  ++ ++  L
Sbjct: 116 PIVMSQPSIRM----LDIDLVGKTGRHLTSFEMLCHDSFNYDDNYIYWKDETVRYSFRFL 171

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T+   +D   L IT                             +  W     G  G   E
Sbjct: 172 TERLRVDP--LLITY---------------------------KEKPWFGG--GNAGNALE 200

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTG 227
           +F                     +E+  LVFM  ++    +          +P   +DTG
Sbjct: 201 VFV------------------MGLEVATLVFMDLKEDKNGDIELEGTRYSRMPLRVVDTG 242

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--------------------- 266
            GLER+  +       Y+  ++K  +    + +  +Y                       
Sbjct: 243 YGLERLVWLSTGTPTVYE-SIYKRSLDYIIKNSNAEYVSPEIMARISEIAAEIDPYSDEL 301

Query: 267 -----------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
                            +NI +   +VDH R+   + +D ++P+N   GY+ R ++RR+ 
Sbjct: 302 VLSRINKTGDKKFMEMLDNIRSAYGLVDHARTLLLMFSDYVIPSNVKVGYLARMLLRRSF 361

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369
            +   + +   +   +  A+  E           K  I   ++ E E++ + L     ++
Sbjct: 362 RFMEKIKFNGSI-NDIFDAVYDEFNKIIKNY--DKDFINNIIKIETEKYKEMLRSAPEII 418

Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI-ISFNQALEEQRSR 428
              ++       ++ +   K+YDT+G+PL+I+  +        +DI  +F + L +    
Sbjct: 419 RKHINK----NTISNENIAKIYDTYGIPLEIISKVFKDLTNKELDIPENFQEYLVKLHEN 474

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
            +     +                G  +F G  +                          
Sbjct: 475 VKKPEKTVKDYPDINTRPLYYNDTGIMEFTGIVMYSNGN--------------------- 513

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
                                  E++ +QT FY E GGQ  D G  + +G ++++ DVQK
Sbjct: 514 -----------------------EIILNQTAFYPEGGGQPADHGYFLYNGKKIEVLDVQK 550

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
               I      +  G +     +   +D + R QL I+HSATHLL        G HV QN
Sbjct: 551 YGNSIVH----IINGSIPGHSRIKGFVDKERRTQLMIHHSATHLLLGICRAYFGEHVWQN 606

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                 D  R D+TH K IT  ++K+IE+   D I  +  +  + +    AI+     L 
Sbjct: 607 SVKKDIDESRLDITHYKKITEDDIKNIENMCLDAIMASKNIHVKNIEWNRAISEYGFRLF 666

Query: 669 --GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G   +D +RVV++         S  CGGTH+ +T +I++L IVS  +++ GI+RI   
Sbjct: 667 EGGFPLSDTIRVVTI-----DDIDSEGCGGTHLKNTKDILMLKIVSTETVQEGIQRIVFT 721

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G  A  +       +     +LKV    +  +  ++  E   ++       L+  + ++
Sbjct: 722 AGPAALRYSQKLYSIINDEQEYLKVPPEKIPEQSIKLVREN--IENKKMINSLERELAEI 779

Query: 787 SCHKI 791
                
Sbjct: 780 YIKNA 784


>gi|213648835|ref|ZP_03378888.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 401

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/404 (37%), Positives = 238/404 (58%), Gaps = 13/404 (3%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
            G+ VE   +GQ+  VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H 
Sbjct: 1   DGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQAI-GHL 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G L+   ++   +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   L
Sbjct: 60  GKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVL 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           RFD +H++ +  +E++ +ED VN  I +NLP+ T IM+ + A A GA AL G KY++RVR
Sbjct: 120 RFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDAAKAKGAMALFGEKYDERVR 179

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+S+     G  S+ LCGGTH S TG+I L  I+SES   AGIRRIEA+TG+ A + +  
Sbjct: 180 VLSM-----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHA 234

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIA 792
           Q ++L  +A  LK    N+  +V  + E  R+L+    + K Q   ++          + 
Sbjct: 235 QSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEKELQQLKDQAAAQESANLSSKAVDLN 294

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V  +   ++ ++ K L++++D L+ ++ S +I+L  +  E K S++  V++D+ DR  A
Sbjct: 295 GVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKA 353

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +L  + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 354 GELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVQGWV 396


>gi|203284140|ref|YP_002221880.1| alanyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|201083583|gb|ACH93174.1| alanyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 592

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/470 (33%), Positives = 259/470 (55%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+  GH  +   SLIP ND T++F  +GM P      G+  P    +
Sbjct: 1   MKLDELRAKYIDFFKSKGHCEIVGKSLIPDNDSTVLFNTAGMQPLVPYLLGEIHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKELSVEYSFEFLTSPHYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + + +LY++V++ D++         +W+K+ G+S D+I  ++   NFW  +   GPCGP 
Sbjct: 116 ISKDKLYVSVFEGDKDIPRDVKTADIWEKL-GISKDRIFYLSREHNFWGPVGNVGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EIF D G          +    +Y EIWN VFMQ+ + N      L +  +DTGMG+ER
Sbjct: 175 TEIFVDTGIDKCSNTCDITCSCGKYFEIWNNVFMQYNKDNNGNYEELKRKCVDTGMGIER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADG- 289
             T LQ K++ YD D F+ +I+  E+++G  Y  N  +    R+I DH+++S F++AD  
Sbjct: 235 TITFLQGKSSVYDTDAFRPIIKQIEKISGKVYGDNLEDDRAIRIIADHIKASCFILADNF 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            +LP+N G+GYVLRR++RRA+ YA+ LG     +  L+ ++     S Y E+ + K  I+
Sbjct: 295 SVLPSNVGQGYVLRRLIRRAIRYAKKLGMESHCLADLVDSVEDIYKSFYKEITEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
             L  E+E+F KTL  G      ++  L   +++ GD++FKLYDT+G P +I +++    
Sbjct: 355 NELNIEEEKFFKTLRYGEQEFVKLIHQLS-SKLIPGDISFKLYDTYGFPYEITEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G +  D   F +  ++ +  ++  S  +  G      +   + + AT  +
Sbjct: 414 GFSM-DREGFEEHFKKHQEVSKKGSDKVFKGGLADCSYETTKLHTATHLL 462



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/146 (44%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ATHLLH AL  +LG HV Q GS IT   LRFD +H   +T  E+K +ED VN
Sbjct: 450 YETTKLHTATHLLHKALQLVLGDHVRQKGSNITSQRLRFDFSHPCKMTDDEIKKVEDIVN 509

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I   L V   IM+ EDA+  GA AL G KY D V V  ++       S  +CGG HV+
Sbjct: 510 LQIKNKLSVKKSIMSLEDALVKGAMALFGEKYEDIVSVYEIDG-----FSIEVCGGPHVN 564

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI 726
           +T E+    I  E +  +GIRRI AI
Sbjct: 565 NTSELGTFKIQKEQASSSGIRRIRAI 590


>gi|219684565|ref|ZP_03539508.1| alanyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219671927|gb|EED28981.1| alanyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 594

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++    GS Y EL + K  I+
Sbjct: 295 VVSPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYGSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITKNLS-SKTIPGDIAFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   ID + F++  ++ +  ++  S  +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NIDKLGFDEFFKKHQKASKKGSDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 5/146 (3%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN
Sbjct: 450 YETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  +L V   IM   +A   GA AL G KY++ V V  ++       S  +CGG HV 
Sbjct: 510 LQIKNSLSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEIDG-----FSLEVCGGPHVE 564

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI 726
           +T E+    I  E S  +GIRRI+AI
Sbjct: 565 NTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|297527343|ref|YP_003669367.1| alanyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256259|gb|ADI32468.1| alanyl-tRNA synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 909

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 189/917 (20%), Positives = 360/917 (39%), Gaps = 159/917 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
                R  F+EFF  +GHE +    ++      L  T + ++ F+   T G   P Y  +
Sbjct: 59  TFDEARRKFIEFFTSHGHEYVEPYPVLARWRNDLYLTIASIIVFQPAVTEGIIDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ  VR      D+DNVG T  RH T FEM G+ +F       Y+    +Q A+D  T
Sbjct: 119 VIVQPSVRL----EDIDNVGLTFGRHLTSFEMGGHHAFNKKNQYVYWVNETLQYAFDFFT 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           K   ++   L                                +++W     G  GP  E+
Sbjct: 175 KTLGIEPENLV-----------------------------FKESWWEGG--GNAGPAYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LVFM+++  N  E+   P + +DTG G+ER+A 
Sbjct: 204 LVDG------------------LELATLVFMKYKIVN-GEKVKNPVLVVDTGYGIERIAW 244

Query: 236 VLQEKTNNYDI--------------------DLFKHLI---------------QASEQVT 260
             Q     +                      D+ K ++                  E++ 
Sbjct: 245 FTQRTPTAFHTIFGSLLETYKNILGIDEPPYDVLKKIVYLLSDKEIEDIYMLNNYLEEIN 304

Query: 261 GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
             +Y  +  + +N    +DH+++ S +++DGI+P+N G GY+ R ++RR +     LG  
Sbjct: 305 YSEYYKSLVDAINLYTALDHVKTLSLMLSDGIVPSNSGEGYLARLVIRRLLRTLIRLGIK 364

Query: 319 EPLMMHLLPALCTEM------GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
              +  ++  L  +          Y +  +    I + +  E  ++   + RG+  +D  
Sbjct: 365 VSALEDVVLELIDKQAKYWKGKYVYDKFHRRLDYILDVMSYETRKYVDIITRGIREIDRF 424

Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432
           +    K   L  +   ++YD+ G+P +I+ +     G       +F   +  +   ++A 
Sbjct: 425 IKKKKK---LVLNDLIQIYDSKGIPPEIVAERAKYYGQQIRVPSNFYSLIAARHGGSQAL 481

Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492
                    ++I      K+  T+ + ++     +                         
Sbjct: 482 VKEKEHELPDEI-VEWASKHNPTKRLFHENPYLRRAS----------------------- 517

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
                  +I++         V+FDQT FY  AGGQ  D G  I     + +  V K   G
Sbjct: 518 ------AKILDSLNE----YVIFDQTIFYPRAGGQDHDKGYIILGDEHIPVKHVYKV--G 565

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             + H +  R  +     + L ID+ NR +L  +H+ATH++  A   +LG HV Q G+  
Sbjct: 566 EVIVHQLATRRKIEPGTRVELVIDWYNRYRLMRHHTATHIVLGAARKVLGEHVWQAGAEK 625

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GT 670
           T +  R D+TH K +++ E++ IE+  N +I + + +    + + +A       +   G 
Sbjct: 626 TTEKARLDITHYKSLSNEEIRKIEELANKVIDEKIDLRFYFLPKFEAEKKFGLKIYQGGA 685

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            Y+  +R+V +   D        C GTHV +T E+  + I+    I+ G+ R+E I   R
Sbjct: 686 VYSPILRIVEIPGWDA-----EACFGTHVYNTSEVGGIKIIKSEKIQDGVIRLEYIASTR 740

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSC 788
              ++    +++     FL V   ++    +++ EE  K +  LI  ++  +  + +   
Sbjct: 741 LPEYISDLQKEVDKALEFLGVKGSSISIAAKKVSEELDKYKVLLIQYRKLFKEKLLNQLL 800

Query: 789 HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
            +  ++  +  ++ E    D +  KS+++ L  + +    +L     +K   + I   E 
Sbjct: 801 GEAQEICGLKTVVLEKQLEDEQLYKSIIEELSLRKR----VLTIYVSDKFVEIAIHPDEA 856

Query: 846 LLDRFNAVDLARLSAKV 862
              + +   L ++   +
Sbjct: 857 RNRKLDLRSLVKILKNI 873


>gi|255513796|gb|EET90061.1| alanyl-tRNA synthetase [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 916

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 187/925 (20%), Positives = 341/925 (36%), Gaps = 163/925 (17%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQAVTT 63
              +TF +FF+K GH +     ++      L FT + +  F+ I  G+   +  Y  +  
Sbjct: 99  EFWSTFADFFKKRGHSMAERYPVVSRWRQDLYFTIASIQDFQRIENGRVNFEYPYNPLIV 158

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG----GYFKERAIQLAWDLLTKEFD 119
            Q C+R     ND+ NVG T RH T F M G  +F     GY++   I+L +D LTK   
Sbjct: 159 PQMCLR----FNDVPNVGVTGRHFTSFMMAGQLAFNYPKEGYWRNETIRLNYDFLTKVLK 214

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + +  L  T                             ++ W+M +    GPC E F   
Sbjct: 215 VKKEALTYT-----------------------------EDIWAMGDFSEFGPCIESF--- 242

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+ N VF +FE  +  +   L    +D G G ER+      
Sbjct: 243 ---------------ANGLELVNSVFTEFEYSS-GKVSELKGKVVDVGWGFERLMWYASG 286

Query: 240 KTNNYD--------------------------------IDLFKHLIQ-----ASEQVTGM 262
               YD                                IDL +   +        +  G+
Sbjct: 287 AQTAYDPVFANELKYLYDSTGVEPNAELYSRMAGKLAEIDLSEENRRQETELEVARAAGI 346

Query: 263 KYEGNNIV-----NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                N +         I DH R+  F I+DG LP+N G GY LR ++RR   ++     
Sbjct: 347 SEREYNEIILPNQALYAIADHARTFLFAISDGALPSNVGGGYNLRILLRRIFDFSERYKL 406

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
               M HL+    +++ S Y ++ ++     + +  E  R+  T  +   ++  +L    
Sbjct: 407 KFD-MQHLMEITASDLKSTYGDMAESIPEAAKIIELERSRYSATRAQARRIVGSLLEKSH 465

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
               ++      +Y+++G+  + +  +   +G+                           
Sbjct: 466 GTSAIDAKTLNTMYESNGITPEFISAVAAEKGIKIEIPE--------------------- 504

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
                                 Y  +    F+++++K        +       +  +  +
Sbjct: 505 --------------------TAYSKILKGDFVEKEKKQKKLDIGTEGIKPTEKLFYSFAE 544

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E     V  +   VV D+TPFYAE+GGQ  D G   G    L++TDVQ    G+ VH 
Sbjct: 545 KAE--ATVVKAENGFVVLDRTPFYAESGGQEADHGRIGG----LEVTDVQ-NIGGVIVHE 597

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                   +    +   +D + R +L  +H+ATHL+  A   +LG H  Q G+  +    
Sbjct: 598 VKGSPLPSK-GSKVHCEVDRERRLRLMAHHTATHLVSAAARAVLGKHAWQEGAKKSATKA 656

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK--YNDR 675
             D+ H + ++  ++K IE   N  I   + V    M R++A  S   ++       +  
Sbjct: 657 HIDIAHYEKLSDRQIKEIESTANGFILHGIKVTMHEMKRKEAEESFGFSIYQGHGMPSGV 716

Query: 676 VRVVSVEYEDGGVHSSALCGGTHV-SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           +R+V +   DG +  +  CGG H+     EI L+ I     I  GI RIE + G  A  +
Sbjct: 717 LRIVEIRDLDGKLIDAEACGGLHLMGRESEIGLIKITGSYRIHDGIDRIEYVAGIAAEDY 776

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIAD 793
           + G +  +  +A         +  R++    E  K +   ++ +    ++E         
Sbjct: 777 IKGMEASIGEIAGTFGADAAGITPRIKAKLAELEKYRSHISELETAIASLESERLLAKPG 836

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
              ++ +  + D + L+++   +    +  + +L     +     ++ V+        A+
Sbjct: 837 SRIVAKL--QYDRQLLRAIATRIADSRKDSVALLFNHQGD-----VVAVSGSECKDG-AL 888

Query: 854 DLARL-SAKVLGGGGGGGRPHMAQS 877
           D     +++      GGG   MA+ 
Sbjct: 889 DFVGAYASEHSLKFTGGGSRRMAEG 913


>gi|219685840|ref|ZP_03540648.1| alanine--tRNA ligase [Borrelia garinii Far04]
 gi|219672614|gb|EED29645.1| alanine--tRNA ligase [Borrelia garinii Far04]
          Length = 594

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHYEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRMEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++    GS Y EL + K  I+
Sbjct: 295 VVSPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYGSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITKNLS-SKTIPGDIAFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   ID + F++  ++ +  ++  S  +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NIDKLGFDEYFKKHQKASKKGSDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/146 (43%), Positives = 84/146 (57%), Gaps = 5/146 (3%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ VN
Sbjct: 450 YETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I  +L V   IM   +A   GA AL G KY++ V V  +     G  S  +CGG HV 
Sbjct: 510 LQIKNSLSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEI-----GGFSLEVCGGPHVE 564

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI 726
           +T E+    I  E S  +GIRRI+AI
Sbjct: 565 NTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|126465992|ref|YP_001041101.1| alanyl-tRNA synthetase [Staphylothermus marinus F1]
 gi|205830219|sp|A3DNI3|SYA_STAMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|126014815|gb|ABN70193.1| alanyl-tRNA synthetase [Staphylothermus marinus F1]
          Length = 909

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 196/930 (21%), Positives = 365/930 (39%), Gaps = 165/930 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
                R  F+EFF  +GH  +    ++      L  T + ++ F+   T G   P Y  +
Sbjct: 59  TFDEARRKFIEFFTSHGHGYVDPYPVLARWRNDLYLTIASIIVFQPAVTEGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             VQ  VR      D+DNVG T  RH T FEM G+ +F       Y+    +Q A+D  T
Sbjct: 119 VIVQPSVRL----EDIDNVGLTFGRHLTSFEMGGHHAFNKKDQYVYWVNETLQYAFDFFT 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
                                     KI G+  + I+     +++W     G  GP  E+
Sbjct: 175 --------------------------KIIGIEPENIV---FKESWWEGG--GNAGPAYEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LVFM+++  N  ++   P + +DTG G+ER+A 
Sbjct: 204 LVDG------------------LELATLVFMKYKIVN-GKKVRNPVLVVDTGYGIERIAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM---------------------------KYEGN- 267
             Q     +   +F  L++  + + G+                           KY    
Sbjct: 245 FTQRTPTAFHT-IFSSLLETYKNILGIDEPPYDVLKKIVYLLSDKEIEDVYMLNKYLEEI 303

Query: 268 ----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                     + +N    +DH+++ S +++DGI+ +N G GY+ R ++RR +     LG 
Sbjct: 304 DYSEYYKSLVDTINLYTALDHVKTLSLMLSDGIVSSNTGEGYLARLVIRRLLRTLIRLGI 363

Query: 318 TEPLMMHLLPALCTEMG------SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
               +  ++  L  +          Y +  +    I + +  E  ++   + RG+  +D 
Sbjct: 364 KVSTLEDIVLELIDKQAKYWKGRYVYDKFHRRLDYILDVMSYETRKYIDIVTRGIREVDR 423

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
            +    K      D   ++YD+ G+P +I+ +     G       +F   +  +   ++A
Sbjct: 424 FIKKKKKITF---DDLIQIYDSKGIPPEIVVERAKHYGQEIRVPSNFYSLIAARHGGSQA 480

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                     ++I                  +  +      +K+  + P +   +     
Sbjct: 481 LIKEKEHELPDEI------------------VEWASKHDPTKKLFHENPYLRRAS----- 517

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
                   ++++         V+FDQT FY  AGGQ  D G  I     + +  V K   
Sbjct: 518 -------AKVLDSLNE----YVIFDQTIFYPRAGGQDHDKGYVILGNEHIPVKHVYKV-- 564

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G  + H +  +  L     + L ID+ NR +L  +H+ATH++  A   +LG HV Q G+ 
Sbjct: 565 GEVIVHQLATKRRLVPGTQVELVIDWYNRYRLMRHHTATHIVLGAARKVLGEHVWQAGAE 624

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            T +  R D+TH K ++  E++ IE+  N +I + + +    + + +A       +   G
Sbjct: 625 KTVEKARLDITHYKSLSDEEIRKIEELANKVIDERIDLKFYFLPKFEAEKRFGLRIYQGG 684

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             Y+  +R+V +   D        C GTHV +T EI  + I+    I+ G+ R+E I   
Sbjct: 685 AVYSPILRIVEIPGWDA-----EACFGTHVYNTSEIGGIKIIKAEKIQDGVIRLEYIAST 739

Query: 730 RARSHLMGQDEKLKSLASFLKV---SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           R   ++    +++     FL         V  +V E  ++Y+ L + + +   ++ ++ L
Sbjct: 740 RLPEYISDLQKEVDKALKFLGAKGLPISIVAKKVSEELDKYKTLLIQYRRLFKEILLKHL 799

Query: 787 SCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
              +  ++  +  ++ E    D +  KS+++ L  K +    +L     +K   + I   
Sbjct: 800 -LEEALEICGLKTVVIEKQLEDEQLYKSIIEDLSLKKR----VLTIYVSDKFVEIAIHPD 854

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           E    + +   L  +      GG GGG+P 
Sbjct: 855 EANNRKLDLRKLVEIL--QNMGGRGGGKPD 882


>gi|14589381|gb|AAK70636.1|AC091238_14 Putative cytosolic tRNA-Ala synthetase [Oryza sativa Japonica
           Group]
          Length = 694

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 178/647 (27%), Positives = 281/647 (43%), Gaps = 67/647 (10%)

Query: 293 ANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            NEGR YVLRRI+RRA+ +    L   +     L+      MG  +PEL   +  I++ +
Sbjct: 65  GNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDII 124

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E F  TL +G          + +     G  AF L+DT+G P+D+ + +    GL+
Sbjct: 125 KDEEESFENTLAKGFEKFKKAADAVKES---GGTDAFVLWDTYGYPVDLTEVMGVDYGLS 181

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D   F+ A+EE R +AR      G         S+     AT       LR       
Sbjct: 182 -VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDANATA-----QLRNQGLAST 228

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           D          D      S+VKAI    E V  A   +   +V + T FYAE GGQ+ DT
Sbjct: 229 DDSPKYGYKDND------SVVKAIYTGSEYVSAASGDEDFGLVLESTSFYAEQGGQIYDT 282

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSA 589
           G   G      +T+VQ    G  +H     +G   L     +   +DY  R  ++ NH+ 
Sbjct: 283 GKIEGSFGSFNVTNVQ-VFAGYVLHMGSFTKGSKALSVGDKVACKVDYARRALIAPNHTC 341

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH+L+ AL  ILG HV Q GS + P+ LRFD +H KP+   +L+ IE  VN  I   L V
Sbjct: 342 THMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEV 401

Query: 650 VTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGGVHSSALCGGT 697
             R +   DA   +G  A+ G  Y D VRVVSV           E ++    S+ LCGGT
Sbjct: 402 FAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLANPESKEWLSISTELCGGT 461

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG------------------QD 739
           H+ +T E     ++SE  I  G+RRI A+T + A   +                     +
Sbjct: 462 HIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHASDAIKDASSIDSEINEASKLEGAILE 521

Query: 740 EKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQL----IHAKRKLQLNVEDLSCH 789
           + + S+ S L         + ++ GRV ++ +E RK +      + ++ ++  ++     
Sbjct: 522 KTIASIKSKLDTALIPAARKADLKGRVSKLEDELRKAKKKMGEENIQKAVKFAIDAAQTA 581

Query: 790 KIADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
                 F ++H+   +D+  ++  +  ++ +    I++        KA +   V     +
Sbjct: 582 LSEGKRFCVAHVDVGLDTSAIREAVIKVKDQKDLPIMLFSTDEATNKAVIYAGVPPSAAN 641

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
               +D    S   L G GGGG+  +AQ  G   ++  +A+      
Sbjct: 642 SLKVLDWLTPSIAPLKGKGGGGKNGIAQGQGTEASQLKEAMEVATQI 688


>gi|51598481|ref|YP_072669.1| alanyl-tRNA synthetase [Borrelia garinii PBi]
 gi|59798511|sp|Q662E4|SYA_BORGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|51573052|gb|AAU07077.1| alanyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 594

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/517 (30%), Positives = 273/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLDKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+      E  K+W+ + G+  D+I  ++   NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQKIPCDTETAKVWESL-GIPKDRIYYLSKAHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFIPIIKRIEVISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T  GS Y EL + K  I+
Sbjct: 295 VVSPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSIETIYGSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   ID + F++  ++ +  ++     +  G      +     + AT  +     L+ G 
Sbjct: 414 GF-NIDKVGFDEYFKKHQKTSKKGGDKVFKGGLADYTYETTRLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 98/208 (47%), Gaps = 14/208 (6%)

Query: 528 LGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILR-------TEMSLVLTIDYQ 578
            GD    + D  G   ++T+      G  +     +    +           +       
Sbjct: 388 PGDIAFKLYDTYGFPYEVTEELAFEYGFNIDKVGFDEYFKKHQKTSKKGGDKVFKGGLAD 447

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
              + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+ +T  E+K +E+ 
Sbjct: 448 YTYETTRLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEI 507

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN  I  +L V   IM   +A   GA AL G KY++ V V  ++       S  +CGG H
Sbjct: 508 VNLQIKNSLSVKKSIMELSEAQKKGAMALFGEKYDNLVSVYEIDG-----FSLEVCGGPH 562

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           V +T E+    I  E S  +GIRRI+AI
Sbjct: 563 VENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|325996515|gb|ADZ51920.1| Alanyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 334

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/330 (49%), Positives = 218/330 (66%), Gaps = 5/330 (1%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-QAVTTV 64
            IR  FL+FFQ  GHE+ PS  L+P ND TL+FTN+GMV FK+IFTG          T+ 
Sbjct: 2   DIRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSS 60

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           Q C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI  AW+ +TK      + 
Sbjct: 61  QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD 120

Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CI 183
           LYI+V+++D+EA KLW+K   +  D+I ++   DNFW M ++GPCGPCSEI+ DQGE   
Sbjct: 121 LYISVHEKDDEAAKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHF 178

Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            G       EG+R++EIWNLVFMQ+E+ +      LPK SIDTGMGLER+  +L+ K NN
Sbjct: 179 KGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKLNN 238

Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +D  LF  L+    ++T + Y      + RV+ DH R+ +FL+A G+    EGRGYVLRR
Sbjct: 239 FDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRR 298

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEM 333
           I+RRA+ +  L+G  E  +  ++  +C + 
Sbjct: 299 ILRRALRHGYLMGLKEAFLYKVVGVVCEQF 328


>gi|224532246|ref|ZP_03672878.1| alanyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511711|gb|EEF82117.1| alanyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 594

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/470 (32%), Positives = 258/470 (54%), Gaps = 21/470 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLEKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLTHLTFFEMLGNWSLGAYFKEYSVRCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIYYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKIKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELDRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TVAFLQGKSSVYDTDAFIPIIKRIEFISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++ T   S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVETIYRSFYDELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L +E+E+F KTL +G      +  +L   + + G++ FKLYDT+G P ++ +++    
Sbjct: 355 KELSTEEEKFFKTLFQGEQEFIKITRNLP-SKTIPGNIVFKLYDTYGFPYEVTEELAFEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           G   ID + F++  +  +  ++     +  G      +   + + AT  +
Sbjct: 414 GF-NIDKLGFDEYFKNHQKISKKGGDKVFKGGLADYTYETTKLHTATHLL 462



 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 5/161 (3%)

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           +    +          + +  H+ATHLLH AL  +LG HV Q GS IT + LRFD  HS+
Sbjct: 435 KGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFVHSE 494

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T  E+K +ED VN  I  +L V   IM   +A   GA AL G KY++ V V  ++   
Sbjct: 495 KMTDDEIKKVEDIVNLQIKNSLSVKKSIMELSEARERGAIALFGEKYDNLVSVYEIDG-- 552

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
               S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 553 ---FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|314981337|gb|EFT25431.1| alanine--tRNA ligase [Propionibacterium acnes HL110PA3]
          Length = 428

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/418 (38%), Positives = 242/418 (57%), Gaps = 31/418 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + I   F++FF+  GH ++PS+SL+  NDPTL+F N+GMVPFK    G E   ++  
Sbjct: 1   MRTAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
           T++QKCVR      D+D VG+T RH TFF+MLGNFSFG YFK  AIQ AW+L+TK     
Sbjct: 60  TSIQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQG 115

Query: 118 -FDLDQRRLYITV--------YDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
               D   +++TV        Y E + EA + W+  +G+  ++I   +  DN+W M   G
Sbjct: 116 GLGFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPG 174

Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPK 221
           P GPCSEI+ D+G    G   G   + +RY+EIWNLVF   +      + +      L  
Sbjct: 175 PGGPCSEIYIDRGPAY-GPDGGPEADEDRYLEIWNLVFETEDLSAVRAKDDFDIAGPLRS 233

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHL 279
           ++IDTG GLER+A +LQ   N Y+ D    +I+ + +++G +Y    ++ V  RV+ DH+
Sbjct: 234 LNIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHV 293

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339
           RS   L+ DG+ P NE RGYVLRR++RR +   RLLG  +P++  LLP     M  ++P+
Sbjct: 294 RSGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPD 353

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHG 395
           ++     +     +E++ F +TL  G  +LD  +  +     + L+G+ AF+L+DT+G
Sbjct: 354 VLTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYG 411


>gi|257076158|ref|ZP_05570519.1| alanyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 891

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 182/885 (20%), Positives = 336/885 (37%), Gaps = 174/885 (19%)

Query: 3   NVSSIRTTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQ 59
           ++  +R  FL FF+++   H ++    ++P     ++  N+ +  F+   T G   P   
Sbjct: 59  SLDEMRQEFLSFFKEDKLPHTIIEKYPVVPRWRDDVLLVNASIYDFQPQVTSGLVPPPGN 118

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q  +R      DLD VG+T RH T FEML + +F       Y+K   I+ ++  L
Sbjct: 119 PLAMSQPSIRM----LDLDLVGKTGRHLTSFEMLCHDAFNYENKYIYWKNETIEYSYRFL 174

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           T++  +D   +                             T  +  W     G  G   E
Sbjct: 175 TEKLHVDGAEI-----------------------------TYKEKPWFGG--GNAGNAVE 203

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTG 227
           +F                   R +E+  LVFM  ++    E         ++P   +DTG
Sbjct: 204 VFV------------------RGLEVATLVFMDMKEDPDGEIDIEGTKYSMMPLKIVDTG 245

Query: 228 MGLERMATVLQEKTNNYDI----------------DLFKHLIQASEQVTGM--KYEGNNI 269
            GLER+  +       Y+                 D+   ++Q   +++     Y  + +
Sbjct: 246 YGLERLVWLSTGTPTVYESILGETIEYIRKNSSAGDIDPEIMQKLSELSAEIDPYSESKL 305

Query: 270 V--------------------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
           +                          +   + DH ++   + AD ++P+N   GY+ R 
Sbjct: 306 LKQVAPWLKKKHISIDNEFLRRLKSFRSLYSLADHTKTLLLMFADYVIPSNVKVGYLART 365

Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
           ++RR++ +   + +++  M  L+                 +  I+  +  E E++ +   
Sbjct: 366 LVRRSLKFMDDISFSKDFM-DLMDFQHEIFSRIVSNY--DRDFIKNIIDIEKEKYAEINK 422

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
                +   +        L    A  LYD+ G+  D++ +    + + G D+   +   E
Sbjct: 423 SAEGKVRKYIH----SGKLELKNAITLYDSEGMNEDLISESF--KKITGKDLELPDNFQE 476

Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
              SR                          T+ + YD  + S+F               
Sbjct: 477 IVISRHETRHTKKKEAPQFPPVH--------TRPLYYDNTKISEF--------------- 513

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                + IV              SG+K  ++ +QT FY E GGQ  D G  I +G ++ +
Sbjct: 514 -----TGIV------------LYSGEKC-IIPNQTAFYPEGGGQPCDLGYFIANGKKVNV 555

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            DVQK  + I           +     +   IDY  R+QL I+HSATHLL   +    G 
Sbjct: 556 VDVQKYNDSIVH----FLDNNIPANSRVKGYIDYTRRKQLMIHHSATHLLLGIMRKYFGE 611

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q+G     +  R D+TH + IT  +++ IED   + I Q+  +    ++   AI   
Sbjct: 612 HVWQSGVKKDINESRIDITHYRKITLEDIRHIEDMCMEAIEQDRKITVSNVSWNPAIEKY 671

Query: 664 AAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              L   G   + ++R+V+++  D     S  CGGTH+ ST  I  + I+   +++ GI+
Sbjct: 672 GFRLFEGGVPVSSKIRIVTIDGID-----SEGCGGTHLDSTAPIGFIKIMKVETLQEGIQ 726

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI    G  A  ++    + ++    +LKV   +V  +  EI+ E  + + +  K + + 
Sbjct: 727 RITYSAGPAAMRYVQLLHDTVQMEQEYLKVDTEDVYRQSLEIFHENLENRKLIDKYRKEK 786

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               L+  +    N   +  + +D  E   ++  + +K    II+
Sbjct: 787 IEGILNAGEPVHENIYVY-ATNLDRDEFNLLIQGIFRKNIKAIII 830


>gi|325996514|gb|ADZ51919.1| Alanyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 513

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 162/554 (29%), Positives = 264/554 (47%), Gaps = 50/554 (9%)

Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400
            ++K ++ +    E+ERF +TL+ G+ L +  L HL +++I +G +AFKLYDT G PLD+
Sbjct: 2   KESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDL 61

Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460
             D+L + G A +D+  F   ++EQ  R++A   G  +      + ++   Y    F+GY
Sbjct: 62  TNDMLRSHG-ACVDMQGFEHCMQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGY 117

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
           +    S                      +  +       + + EA   Q+V V+ ++TPF
Sbjct: 118 ETTECS----------------------AKALGFFDSGFKEMTEANPNQEVWVLLEKTPF 155

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YAE GG +GD G  +       +    K   G+      +++  L+    ++  +    R
Sbjct: 156 YAEGGGAIGDKGALLKGDEEAALVLDTKNFFGLNFSLLEIKKA-LKKGDQVIAQV-SDER 213

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+ +ED VN
Sbjct: 214 FEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVN 273

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             I ++L      M    A   GA AL   KY + VRVVS +       S  LCGG HV 
Sbjct: 274 AQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFK-----EASIELCGGIHVE 328

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG I    IV ES + +G+RRIEA+ G+        ++++LK+    LK +  +V+  +
Sbjct: 329 NTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKILLKNN--DVIAGI 386

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            ++ E  +  Q             DL   KI  V+ +  ++ + D   +K ++D L+ K 
Sbjct: 387 NKLKESVKNSQK-------APVPMDLPVEKIHGVSLVVGVVEQGD---IKEMVDRLKSKH 436

Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880
           +  + M+     E   ++   V         A   A   A++L GG GGGR   A +GG 
Sbjct: 437 ERLLAMVFKKENEH-ITLACGVKNAP---IKANAWANEVAQIL-GGKGGGRDDFASAGGK 491

Query: 881 NGNKADQAIAGVAS 894
           +  K   A+    +
Sbjct: 492 DTEKLQAALNLAKN 505


>gi|295698289|ref|YP_003602944.1| alanyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
 gi|291157382|gb|ADD79827.1| alanyl-tRNA synthetase [Candidatus Riesia pediculicola USDA]
          Length = 426

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/421 (39%), Positives = 245/421 (58%), Gaps = 18/421 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEK-PVYQA 60
           N   IR  FL FFQ+  H +LP S L+P   + +L+FTN+GM  F+  F  +EK   +  
Sbjct: 5   NTHEIRKIFLRFFQEKDHLILPGSKLVPSERNSSLLFTNAGMNQFRENFFKKEKLSSFTR 64

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
           V T Q C+RAGGK +DL+NVG TN HHT FEMLGNFSFG YF+  +I+ AW+LLT  K F
Sbjct: 65  VATSQYCIRAGGKFSDLENVGYTNSHHTLFEMLGNFSFGDYFRSESIEYAWELLTSKKWF 124

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDN-------FWSMAETGPCGP 171
            + + ++ ITV+  DEE++ +W    G+S +KI +I   +N       FW M +TGPCGP
Sbjct: 125 GISKNKILITVHHLDEESYDIWANQIGISKNKIFKIEDKENHKYHSENFWKMGKTGPCGP 184

Query: 172 CSEIFF--DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
            +EIF+  D+ +   G L       + +IEIWN+VF+QF   +  +   L   SIDTGMG
Sbjct: 185 STEIFYNFDEKDDFDGSLESFERRKKNFIEIWNIVFIQFNLNSSNKLEPLRYKSIDTGMG 244

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQAS-EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288
           LER+A+V+Q   +NY ID FK LIQ+   Q + + +        R++ DH+RS   +I +
Sbjct: 245 LERIASVIQNVKSNYQIDTFKKLIQSIRSQFSAICF---KDYTLRILSDHIRSIVLIINE 301

Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            I P+N GRGYV+R+I+RRA+    L G  EP +  ++          +  +   + +IE
Sbjct: 302 NIKPSNVGRGYVIRKIIRRAVRKGYLDGIREPFLYKIVSCFTRSNEKDFKYVKINQKIIE 361

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
            T++ E+++F K +  G+  L   L +      ++    F L+DT+GLP+DI   I    
Sbjct: 362 HTIKKEEKQFLKIILVGIKFLKEKLKNFN-YRFISEKDIFLLHDTYGLPIDIAMKICKEH 420

Query: 409 G 409
           G
Sbjct: 421 G 421


>gi|282165634|ref|YP_003358019.1| alanyl-tRNA synthetase [Methanocella paludicola SANAE]
 gi|282157948|dbj|BAI63036.1| alanyl-tRNA synthetase [Methanocella paludicola SANAE]
          Length = 863

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 194/896 (21%), Positives = 345/896 (38%), Gaps = 171/896 (19%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
                +++ F++ G+  L     +      L F  +G+  F+     G+ +P   AV   
Sbjct: 69  EAWDCYVKTFEQWGYVPLERYPTVARWYEDLYFVAAGINDFQPYVVSGELEPPAPAVLEP 128

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q C+R     ND+DNVG T RH+T F M+G  +F       YFKE  I    + LTK   
Sbjct: 129 QFCLR----FNDIDNVGITGRHYTGFIMVGQHTFNTPEKHVYFKEEGIAQIQEFLTKGL- 183

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
                                    G+ A +I+     ++ W+    G  GP  E F   
Sbjct: 184 -------------------------GIPAHEILFH---EDVWAGG--GNFGPSIEYF--- 210

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                           R +E+ N V+MQ+EQ     R  L    ID G GLER A   Q 
Sbjct: 211 ---------------SRGLELGNQVYMQYEQLPDGFR-ELKTKVIDMGAGLERWAWFSQG 254

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN-------------------------------- 267
              +YD   F   +      TG + +                                  
Sbjct: 255 LPMSYDA-TFPKTMDFLYTKTGYRPDPEFQARFAKYAGILNVDELEDAHSAWNDIAGQMG 313

Query: 268 -----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316
                             I DH RS    I DG LP+N G GY LR ++RR    A   G
Sbjct: 314 MSLDELKGAVYKNRALYAIADHTRSLLVAIHDGALPSNVGGGYNLRNLLRRCWTLADQYG 373

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
                +  +      E GS Y EL      + + +  E +R+ ++  +   ++  ++   
Sbjct: 374 LDVD-LNDVFRCHIDEFGSWYTELK-DYGSLFDIIDVEKKRYDESKQKSQNIIKRMV--- 428

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
              E    +   +LYD+ G+  +++++      +       F   ++ +  R        
Sbjct: 429 KSKEAFTPEKLVELYDSQGVAPEMIKESKPDLEIP----EDFYVRVQARHERREER---- 480

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
                 K+  S       T  + Y+     +F  +  K++                    
Sbjct: 481 ------KVEASETAGLPKTVPMYYEKPHEFRFEADVVKLITP------------------ 516

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
                         V+VV D+T FY   GGQ GDTG   G    +++ DV K+ +G+ VH
Sbjct: 517 --------------VKVVLDRTLFYPLGGGQAGDTGFMNG----IKVKDVYKQ-DGVVVH 557

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
             ++E  +      +V  +D   RR LS +H++TH++++A   +LG HV Q G+  TP+ 
Sbjct: 558 --VLESPLPADAKRVVGEVDKDRRRILSAHHTSTHIVNYAARKVLGDHVWQAGAEKTPEK 615

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYND 674
            R D+TH + +T A+L+ IE   N ++ +N+PV    ++R +A    +  +   G     
Sbjct: 616 ARLDITHYESLTFAQLQEIERVANGLVMENVPVHVEELSRTEAERRYSMRIYQGGAVPGK 675

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R++ +       +    CGG HV +T ++  + ++S   I+ G+ R+E  +   + + 
Sbjct: 676 VLRIIRIPG-----YDVEACGGIHVDNTAKVGFIKMLSSERIQDGVVRLEFKSLDNSLNE 730

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +   D  LK ++    V   ++       + E+++L   +   + ++    +     +D 
Sbjct: 731 VQYHDRLLKEVSDLWGVGYDDIPKTAARFFNEWKELSKQNKDLQSRMVRALIEGSLNSDT 790

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             +   +   D   +   ++AL+ + +   + L G +     S  + V E L + +
Sbjct: 791 --IDLSLPSGDFGTVMKAVEALKPRFKGKTVFLKGDNFAYGYSETVNVKEKLGEGY 844


>gi|225552345|ref|ZP_03773285.1| alanyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371343|gb|EEH00773.1| alanyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 594

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/517 (30%), Positives = 273/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+  D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GIPKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMELSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|195941424|ref|ZP_03086806.1| alanyl-tRNA synthetase [Borrelia burgdorferi 80a]
 gi|221217734|ref|ZP_03589202.1| alanyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|223888838|ref|ZP_03623429.1| alanyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|225550064|ref|ZP_03771024.1| alanyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|221192411|gb|EEE18630.1| alanyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|223885654|gb|EEF56753.1| alanyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|225369176|gb|EEG98629.1| alanyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 594

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 IVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|226321195|ref|ZP_03796732.1| alanyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226321538|ref|ZP_03797064.1| alanyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226232727|gb|EEH31480.1| alanyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226233392|gb|EEH32136.1| alanyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 594

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|224534087|ref|ZP_03674670.1| alanyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|224512786|gb|EEF83154.1| alanyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 594

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 IVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   ID + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NIDKLGFNEHFKKHQKTSKKGGEKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGEKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|216264895|ref|ZP_03436887.1| alanyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215981368|gb|EEC22175.1| alanyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|312148018|gb|ADQ30677.1| alanyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 594

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   ID + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NIDKLGFNEHFKKHQKTSKKGGEKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGEKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|15594565|ref|NP_212354.1| alanyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|6707746|sp|O51238|SYA_BORBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|2688110|gb|AAC66604.1| alanyl-tRNA synthetase (alaS) [Borrelia burgdorferi B31]
          Length = 594

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMELSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|224532653|ref|ZP_03673274.1| alanine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224512433|gb|EEF82813.1| alanine--tRNA ligase [Borrelia burgdorferi WI91-23]
          Length = 594

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   +D + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NVDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLFVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|218249169|ref|YP_002374745.1| alanyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|218164357|gb|ACK74418.1| alanyl-tRNA synthetase [Borrelia burgdorferi ZS7]
          Length = 594

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   +D + F++  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NVDKLGFDEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFIHSEKMTDDEIKKVEEIVN 509



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFDEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFIHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|312149615|gb|ADQ29686.1| alanyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 594

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/517 (30%), Positives = 273/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   +D + FN+  +  +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NVDKLGFNEHFKRHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKRHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|225549137|ref|ZP_03770112.1| alanyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225370363|gb|EEG99801.1| alanyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 594

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/517 (30%), Positives = 274/517 (52%), Gaps = 23/517 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ +R  +++FF+   H  +   SL+P NDPT++F  +GM P      G+  P    +
Sbjct: 1   MTLNKLRKKYIDFFKSKKHFEIMGKSLVPENDPTVLFNTAGMQPLIPYLLGEVHPSGDML 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
             VQKC+R G    D+D VG    H TFFEMLGN+S G YFKE +++ +++ LT     +
Sbjct: 61  VNVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEYSVKCSFEFLTSSDYLN 115

Query: 120 LDQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPC 172
           + +  LY++V++ D+E        K+W+ + G+S D+I  ++ + NFW  +   GPCGP 
Sbjct: 116 IPKDSLYVSVFEGDQEIPRDTETAKVWESL-GISKDRIHYLSKDHNFWGPVGSKGPCGPD 174

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232
           +EI+ D G+         +    +Y EIWN VFMQ+ +        L +  +DTGMGLER
Sbjct: 175 TEIYVDTGKSKCSLDCNITCSCGKYFEIWNNVFMQYNKDENGNYIELGRKCVDTGMGLER 234

Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG- 289
               LQ K++ YD D F  +I+  E ++G  Y  + ++    R+I DH++++ F++AD  
Sbjct: 235 TIAFLQGKSSVYDTDAFMPIIKRIEYISGKIYGQKEDDDRCIRIISDHVKAACFILADSS 294

Query: 290 -ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348
            + P+N G+GYVLRR++RR++ YA+ LG     +  L+ ++     S Y EL + K  I+
Sbjct: 295 VVFPSNLGQGYVLRRLIRRSIRYAKKLGIKSHFLADLVDSVEAIYRSFYNELTEKKDFIK 354

Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           + L  E+E+F KTL +G      +  +L   + + GD+AFKLYDT+G P ++ +++    
Sbjct: 355 KELSKEEEKFFKTLSQGEQEFIKITRNLP-SKTIPGDIAFKLYDTYGFPYEVTEELAIEY 413

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI--GYDLLRGS 466
           G   ID + FN+  ++ +  ++     +  G      +   + + AT  +     L+ G 
Sbjct: 414 GF-NIDKLGFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGD 472

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              ++   +  ++   D  +        I +  EIV 
Sbjct: 473 HVRQKGSNITAERLRFDFVHSEKMTDDEIKKVEEIVN 509



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 5/175 (2%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G   H    ++   +    +          + +  H+ATHLLH AL  +LG HV Q GS 
Sbjct: 421 GFNEHFKKHQKTSKKGGDKVFKGGLADYTYETTKLHTATHLLHKALQLVLGDHVRQKGSN 480

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           IT + LRFD  HS+ +T  E+K +E+ VN  I  +L V   IM   +A   GA AL G K
Sbjct: 481 ITAERLRFDFVHSEKMTDDEIKKVEEIVNLQIKNSLSVKKIIMKLSEAREKGAMALFGEK 540

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           Y+D V V  ++       S  +CGG HV +T E+    I  E S  +GIRRI+AI
Sbjct: 541 YDDLVSVYEIDG-----FSLEVCGGPHVENTNELGTFKIQKEQSSSSGIRRIKAI 590


>gi|160879109|ref|YP_001558077.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|205829960|sp|A9KLZ5|SYA2_CLOPH RecName: Full=Alanyl-tRNA synthetase 2; AltName: Full=Alanine--tRNA
           ligase 2; Short=AlaRS 2
 gi|160427775|gb|ABX41338.1| Alanine--tRNA ligase [Clostridium phytofermentans ISDg]
          Length = 591

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/519 (31%), Positives = 278/519 (53%), Gaps = 18/519 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              + +R  ++++F++ GH+ + S+SL+P NDPT++FT +GM P      G+  P    +
Sbjct: 1   MTANELRKMYVDYFKERGHQEIASASLLPENDPTVLFTTAGMHPLVPYLLGENHPKGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            +VQKCVR G    D+D VG    H TFFEMLGN+S G YFKE +I +++D LT   ++ 
Sbjct: 61  VSVQKCVRTG----DIDEVGDDT-HLTFFEMLGNWSLGEYFKEESISISYDFLTTCLNIP 115

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSE 174
           + +L +TV++ DE      E  + W K  GL  ++I      +N+W    +TGPCG  +E
Sbjct: 116 KEKLAVTVFEGDELVPRDEEVSQTW-KSKGLQDNQIFYYGREENWWGPAGQTGPCGTDTE 174

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF+D G+   G   G + +  +Y+EIWN VFMQ+ ++       + + ++DTGMG ER+ 
Sbjct: 175 IFYDMGKPSCGVNCGPACDCGKYVEIWNNVFMQYHKKPDGSYEEMKQKNVDTGMGFERVL 234

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG--ILP 292
           T+L   TN Y+ +LF  +    +++        +  + R+I +H+R+ +FL+ D   I+P
Sbjct: 235 TILNGYTNVYETELFLPVKNRLDEIIEANEAKLSEKSKRIICEHIRAVTFLLGDPKMIVP 294

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +N  +GY+LRR++RR + + + +     ++  L   +  + GS Y EL + +L I E L 
Sbjct: 295 SNSEQGYILRRLIRRMIRHLKQVSIENNVLCKLSKVIVEQYGSIYVELRENELFIMEQLE 354

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E + F KTLDRGL         +G+++ILNG+++FKLYDT G P++   ++     +  
Sbjct: 355 KEYDLFSKTLDRGLKNAKLYFDQVGEEKILNGELSFKLYDTFGFPIEFTIELASEMEIT- 413

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG--YDLLRGSKFMK 470
           +D+ ++NQ   E + ++R  +     G            + AT  +      + G+   +
Sbjct: 414 VDVEAYNQKFAEHQKKSRQGAEVKFKGGLSDHGEQTTRLHTATHLLNGALRTVLGTDVFQ 473

Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509
               +  ++   D +       + + +   IV EA+  Q
Sbjct: 474 RGSNITEERLRFDFSFHRKLTKEELEEVERIVNEAIRNQ 512



 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 5/147 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           Q +  H+ATHLL+ AL T+LG+ V Q GS IT + LRFD +  + +T  EL+ +E  VN+
Sbjct: 448 QTTRLHTATHLLNGALRTVLGTDVFQRGSNITEERLRFDFSFHRKLTKEELEEVERIVNE 507

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I   + V+   M  ++A   GA  +   KY + V+V  +       +S  +CGG HV +
Sbjct: 508 AIRNQIDVLCEEMTVKEAKELGAVGIFEDKYGEVVKVYMIPG-----YSKEICGGPHVKN 562

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITG 728
           T E+     V E +  AG+RRI+A+ G
Sbjct: 563 TSELKSFRTVKEEASSAGVRRIKAVIG 589


>gi|307128669|ref|YP_003880699.1| alanyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
 gi|306483131|gb|ADM90001.1| alanyl-tRNA synthetase [Candidatus Sulcia muelleri CARI]
          Length = 446

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/449 (35%), Positives = 261/449 (58%), Gaps = 20/449 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            N  +I   FL FF+K  H+++ S+SL+  NDPTLMFTN+GM  FKN F   + P +  +
Sbjct: 1   MNYKNIIKNFLYFFKKKNHKIIYSASLLAKNDPTLMFTNAGMNRFKNYFICYKHPKFLRI 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T +QKC+R  GKHNDL +VG+   HHT FEMLGN+SFG YFK++AI+ AW+LLTK + + 
Sbjct: 61  TNIQKCLRITGKHNDLYDVGKDKYHHTMFEMLGNWSFGDYFKKKAIKWAWELLTKIYKIK 120

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
           +  +Y+T++  D+        E++K WKK   +  +KII     +NFW M ETGPCG  S
Sbjct: 121 KDNIYVTIFSGDKKKNLPFDRESYKFWKK--RIYENKIIFFDKKNNFWEMGETGPCGYSS 178

Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           EI  D    + +    G    ++     IE+WNLVF+++ ++       LP+  +DTGMG
Sbjct: 179 EIHIDIRNEKEKNKISGKKLINKGHPLVIELWNLVFIEYFREKNGNLEKLPQSHVDTGMG 238

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287
           +ER+  +LQ+K + YD D+F  LI+  E +TG+ Y     + +  RV+ DH+R+  F I 
Sbjct: 239 IERLCMILQKKKSTYDTDIFNILIKKIENITGIVYGKFYKHDIAIRVLADHIRAIVFAIK 298

Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA-KLL 346
           DG++P+N+  GY++++++RR + Y  +    +   ++ L        + +   I   + +
Sbjct: 299 DGVIPSNKKSGYIIKKLLRRTIIYYYIFLKKKKKFLYKLVKCVLLQKNKFNYKINNKEKI 358

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404
           I+  ++ E+  F KT+ +    +  ++  L K   + +NG + FKLYDT+GLP ++   I
Sbjct: 359 IKYIIKKEEILFFKTISKVTFKIKKIIFLLKKEGKKRINGKIIFKLYDTYGLPFELANFI 418

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHS 433
                +  ID  SF + + +Q+ R++   
Sbjct: 419 AIKNNMI-IDQFSFEKEMLKQKLRSKQKK 446


>gi|163784397|ref|ZP_02179287.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880336|gb|EDP73950.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 273

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/274 (53%), Positives = 195/274 (71%), Gaps = 3/274 (1%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M ++  + IR  FLE+F+  GHE++ SSS+IP  DPTL+F N+GMVPFKN+F G EK  Y
Sbjct: 1   MKSLTSNEIRKNFLEYFKNKGHEIVKSSSIIPETDPTLLFVNAGMVPFKNVFLGLEKRPY 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +   + QK  R  GKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTK  
Sbjct: 61  KRAASCQKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKKEAIEYAWEYLTKIL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           ++ + +L+++V+ ED+EA+ +WK + GL  +KI ++   DNFWSM ETGPCGPCSEI+FD
Sbjct: 121 EIPEEKLHVSVFIEDDEAYDIWKNVIGLPEEKIHKLGVEDNFWSMGETGPCGPCSEIYFD 180

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           +GE       GS E+ ERY+EIWNLVFMQ+ +    +   LP  +IDTGMGLER+A+VLQ
Sbjct: 181 RGEEYGNPEFGSDED-ERYLEIWNLVFMQYNRDETGKLTPLPHPNIDTGMGLERIASVLQ 239

Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272
              +NY+ DLF  +I+ +E ++G KY   N  + 
Sbjct: 240 GAKSNYETDLFMPIIKWTENISGKKYNPENPKDI 273


>gi|14589371|gb|AAK70626.1|AC091238_4 Putative cytosolic tRNA-Ala synthetase [Oryza sativa Japonica
           Group]
          Length = 351

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/333 (40%), Positives = 182/333 (54%), Gaps = 27/333 (8%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59
            S +R TF+ FF+   H   PSS ++P +DPTL+F N+GM  FK +F G   P       
Sbjct: 9   ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68

Query: 60  -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
                 QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE AI  AW+LLT+ +
Sbjct: 69  RRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQVY 128

Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170
            L   R+Y T +  DE        E+  +W K   L  +K++     DNFW M +TGPCG
Sbjct: 129 KLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPCG 186

Query: 171 PCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           PC+EI FD+           + +    IEIWNLVF+QF ++       LP   +DTGMG 
Sbjct: 187 PCTEIHFDRV-GNRDAASLVNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGMGF 245

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVT-----------GMKYEGNNIVNHRVIVDHL 279
           ER+ ++LQ K +NYD D+F  +  A  Q+            G +      + +RV+ DH+
Sbjct: 246 ERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHI 305

Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312
           R+ SF IADG  P   G   +    +R    + 
Sbjct: 306 RTLSFAIADGSQPGGMGWTLIGNIPLRSNPTHF 338


>gi|242556274|pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase Lacking The C-Terminal Dimerization Domain In
           Complex With Ala-Sa
          Length = 739

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 183/793 (23%), Positives = 298/793 (37%), Gaps = 181/793 (22%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVT 62
           +   R  +L FF++ GH  +    ++      +  T + +  F+   T G   P    +T
Sbjct: 62  LDEXREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLT 121

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKE 117
             Q C+R     +DLD+VGRT RH T FE   + +F       Y+K   +    +LL   
Sbjct: 122 ISQPCIRL----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELL--- 174

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
                                      G+  + I+     +  W+    G  GPC E   
Sbjct: 175 ------------------------NELGVKKEDIV---YKEEPWAGG--GNAGPCLE--- 202

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-------RFILPKMSIDTGMGL 230
                I GG           +E+  LVF   E+  + +               +DTG GL
Sbjct: 203 ----AIVGG-----------LEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGYGL 247

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV-------------- 276
           ER     +     YD  +F  ++      + + +   +    R++               
Sbjct: 248 ERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIXGELRG 306

Query: 277 -----------------------------------DHLRSSSFLIADGILPANEGRGYVL 301
                                              DH R   F + DG++P+N G GY+ 
Sbjct: 307 ERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLA 366

Query: 302 RRIMRRAMCYARLL--GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
           R  +RR++  A  L  G     +  L+      +G    E       ++E L  E ER+ 
Sbjct: 367 RLXIRRSLRLAEELELGLD---LYDLVEXHKKILGF---EFDVPLSTVQEILELEKERYR 420

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            T+ +G  L++ ++    K   L  D   +LYD+HG+P+++   I   +G          
Sbjct: 421 TTVSKGTRLVERLVERKKK---LEKDDLIELYDSHGIPVELAVGIAAEKGAEVEXPKDIY 477

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             L ++ S+A                 +L+ +Y AT+ + YD     +F  E        
Sbjct: 478 AELAKRHSKAEKVQEKK---------ITLQNEYPATEKLYYDDPTLLEFEAE-------- 520

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
                          I  +G+ V           + +++ FY E+GGQ  D G  I +G 
Sbjct: 521 --------------VIGVEGDFV-----------ILNRSAFYPESGGQDNDVGYLIANGG 555

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           + ++ DV + A+G+ +H  +V+         +   ID   R +   +HSATH+L ++L  
Sbjct: 556 KFEVVDVLE-ADGVVLH--VVKGAKPEVGTKVKGVIDSDVRWRHXRHHSATHVLLYSLQK 612

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +LG+HV Q G+       R DVTH +  +  E+K IE   N  I  N P+     +R +A
Sbjct: 613 VLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEXLANREILANKPIKWEWXDRIEA 672

Query: 660 IASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                  L   G     ++RVV V            CGGTH  STGEI  L I+   SI+
Sbjct: 673 ERKFGFRLYQGGVPPGRKIRVVQVG------DDVQACGGTHCRSTGEIGXLKILKVESIQ 726

Query: 718 AGIRRIEAITGQR 730
            G+ R E   G+ 
Sbjct: 727 DGVIRFEFAAGEA 739


>gi|218884411|ref|YP_002428793.1| alanyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766027|gb|ACL11426.1| alanyl-tRNA synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 908

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 184/905 (20%), Positives = 349/905 (38%), Gaps = 162/905 (17%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
           ++  +R  F+ F +  GH ++    ++      L  T + +V F+   T G   P Y  +
Sbjct: 59  SLQEVREKFIGFLKSKGHGVVDPYPVLARWRNDLYLTIASIVVFQPAVTDGIVDPPYNPL 118

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
             +Q  +R     +D+DNVG T  RH T FEM G  +F       Y+ E  +    +   
Sbjct: 119 VIIQPSIRL----SDIDNVGLTFGRHLTSFEMGGMHAFNKPGKFVYWVEGILDNTIEFFN 174

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
           KE  +D   L                                + +W     G  GP  E+
Sbjct: 175 KEIGIDLDDLV-----------------------------FKEGWWEGG--GNAGPAPEV 203

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
             D                   +E+  LV M ++     +    P + +D G G+ER+A 
Sbjct: 204 LVDG------------------MELATLVHMMYKVV-DGKYVENPVLVVDCGYGIERIAW 244

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV------------------- 276
             Q+    +   ++  L+   + V G++    +++   V +                   
Sbjct: 245 FTQKTPTGFHA-IYGRLVNEYKDVLGVEEPSYDVLKKAVYLLSDKEIGGIHEYERLLREL 303

Query: 277 -------------------DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                              DH R+ S +++DG++P+N G GY+ R ++RR +     LG 
Sbjct: 304 GFGDYVDEFVKTIYLYSALDHARTISLMLSDGVVPSNTGEGYLARLVIRRLLRNLARLGV 363

Query: 318 TEPLMMHLLPALCT------EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
               +  ++  L        +    Y +  + +  I + +  E  +F   + RG+ ++D 
Sbjct: 364 EPSRLTDVVQELLDRQVKYWKNDYIYGKFEKHRDYILDVVTMETSKFIDAVSRGIDIVDK 423

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           +L    +  +        +YD+HG+P + + +     G+       F   + +     R 
Sbjct: 424 LLKKKRELLLE---DLITIYDSHGIPPEFVAERAREHGVKVEIPGDFYSRIAQ-----RH 475

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
            S G+     E  +               D+++ +       +V  + P +   N     
Sbjct: 476 SSPGVLVKEKEHEFPE-------------DVVKWASGFPATYRVFHENPYLTSVNA---- 518

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
            K +  +G+            ++ D+T  Y  AGGQ  DTG    +G   ++  V K  +
Sbjct: 519 -KVLGVRGK-----------YLILDRTVMYPWAGGQDHDTGFIEVNGRGYEVEYVGKVGD 566

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I   H + E   +     + + ID+  R +L  +H+ATH++  A   ILG HV Q G+ 
Sbjct: 567 VII--HVLKEPVEINENTMVRVVIDWYRRYRLMKHHTATHIILAAARYILGDHVWQAGAE 624

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--G 669
            T +  R D+TH K +TS +++ IE+  N II   + +      + +A       +   G
Sbjct: 625 KTIEKARLDITHHKSLTSEDVRKIEELANRIIEDRVDLRFHYTGKFEAENKYGLKIYQGG 684

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             Y+  +R+V +   D        C GTHV +T E+  + I++   I+ G+ R+E I   
Sbjct: 685 AIYSPILRIVEIPGWDA-----QACFGTHVFNTSEVGGVKIINAERIQDGVIRLEFIAST 739

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKL--QLNVEDL 786
           R    +   + ++    S L   QG++   V++I  EY + L+++   R L  +  +   
Sbjct: 740 RLVDKIHLLENEIGEALSILGSKQGDLASAVKKIKREYDKTLEVLDKYRDLMGKTIISKA 799

Query: 787 SCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
              +I    ++ +   +   D K +K V++ L  K       ++      +   + V  E
Sbjct: 800 LTEEINICGIDTVYVELPISDEKLVKQVLEELSLKHG-----VLTTIDTGELIEIAVKPE 854

Query: 845 DLLDR 849
             + +
Sbjct: 855 KAVKK 859


>gi|227872330|ref|ZP_03990685.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
 gi|227841837|gb|EEJ52112.1| possible alanine--tRNA ligase [Oribacterium sinus F0268]
          Length = 359

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/318 (47%), Positives = 210/318 (66%), Gaps = 8/318 (2%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL +FQ+  H ++ S SL+P ND +L+  NSGM P K  FTGQE P  + V T
Sbjct: 41  VNELRKMFLAYFQEKEHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPKRRVAT 100

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++N+G+T RH TFFEMLGNFSFG YFK  A+  AW+ LT+   L++ 
Sbjct: 101 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKSEALHFAWEFLTERVGLEKD 156

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           RLY ++Y EDEEAFK+W +  G+ AD+I R    DNFW     GPCGPCSEI++D+GE  
Sbjct: 157 RLYPSIYLEDEEAFKVWNEEIGIPADRIYRFGKKDNFWEHGV-GPCGPCSEIYYDRGEKY 215

Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
             G       EG+R++E+WN+VF QF    K     L + +IDTGMGLER+A V Q+  +
Sbjct: 216 GTGPEDVMGGEGDRFLEVWNVVFSQFNNDGKGNYTDLIQKNIDTGMGLERLAVVCQDVPS 275

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
            +D+D  + ++   E ++G KY  +    V+ R+I DH++S +F+ +DGI+P+NEGRGYV
Sbjct: 276 LFDVDTNQAMMTEIESLSGKKYLEDKTADVSFRIIADHVKSCTFMASDGIMPSNEGRGYV 335

Query: 301 LRRIMRRAMCYARLLGYT 318
            RR++RRA  + R+LG  
Sbjct: 336 FRRLLRRAARHGRILGIQ 353


>gi|258655273|ref|YP_003204429.1| alanine--tRNA ligase [Nakamurella multipartita DSM 44233]
 gi|258558498|gb|ACV81440.1| Alanine--tRNA ligase [Nakamurella multipartita DSM 44233]
          Length = 465

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 239/473 (50%), Gaps = 56/473 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +   IR  +L+F  + GH ++P + LIP +DPT +FT SGM P      G + P    +
Sbjct: 1   MDADDIRRIYLDFMVERGHVVIPRAPLIPRDDPTTLFTGSGMQPLLPYLLGADHPAGTRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T  Q C+RA     D+D VG  NRH TFFEMLGN+S G YFK   +   W+ LT    LD
Sbjct: 61  TDSQTCLRAQ----DIDEVG-DNRHTTFFEMLGNWSLGDYFKAEQLPQVWEFLTDRVGLD 115

Query: 122 QRRLYITVYD--------EDEEAFKLWKKIS---GLSAD------------------KII 152
             R+Y++ +         +D E+  +W ++    G+SAD                  +I 
Sbjct: 116 PNRIYVSCFSGDPEHGIAKDTESAAIWTRLFTAAGVSADQVDLDTEEHGGEVGNQGARIA 175

Query: 153 RITTNDNFW-------SMAETGPCGPCSEIFF----DQGECIPGGLPGSSEEGERYIEIW 201
              +  N+W        M    P GP SE+F+     + +   G     + +  RY+EI 
Sbjct: 176 FYGSK-NWWCRGGHAQDMPVGEPGGPDSEMFYLFPQIEHDPAYGAHCHQNCDCGRYLEIG 234

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           N VFM++ +        LP+ ++D G GL R+A    +  + + I+L   ++   E+++G
Sbjct: 235 NSVFMEYVRTETG-FAPLPRRNVDFGGGLARIAAASIDSPDVFRINLLWPIVAKLEELSG 293

Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321
             Y+ +  V  RVI DHLR ++FL  DG+ P+N+ +GYV+RR++RRA+ YA  LG  +  
Sbjct: 294 RSYDTDT-VAMRVIADHLRGATFLAVDGVRPSNKEQGYVMRRLIRRAIRYAFDLGLQQNF 352

Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
              ++P +       YPE+ Q    +   L  E++ F +TL++G+  L G        + 
Sbjct: 353 FAEIIPTVSGMYTQDYPEVAQRAESVVGVLVKEEKAFRRTLNKGIKQLRGY------KDG 406

Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAH 432
           + G   F LYDT G P+++  +   A+G+A  +     F++ + EQR+R++A 
Sbjct: 407 IGGAELFVLYDTFGFPVELSTEEARAKGIALAENWRADFDEKMAEQRARSQAA 459


>gi|300214775|gb|ADJ79191.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 423

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/448 (34%), Positives = 246/448 (54%), Gaps = 34/448 (7%)

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKYEGNN--IVNHRVIVDHLRSSSF 284
           MGLER+ +V Q    N++ DLF  +I+ + ++ TG KY  N    V+ +VI DH R+ +F
Sbjct: 1   MGLERVVSVFQHARTNFETDLFLPIIEKTAELSTGKKYGENAEADVSFKVIADHARAVTF 60

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344
            I DG LP+NEGRGYV+RR++RRA+ + + LG  E  +  L+P +   M SAYPE+++  
Sbjct: 61  AIGDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQA 120

Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQ 402
             IE+ ++ E++RF  TL  G+ LLD +++   ++  + L G   FKLYDT+G PL++ +
Sbjct: 121 EFIEKVIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTK 180

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           +     GL  +D   FN+ +E+Q++RARA      S   +     L +    ++++GY  
Sbjct: 181 EYANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL--LTDITTPSEYVGYHE 237

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           L+                        + ++K I+   E+V+   +  + +V+FD+TPFYA
Sbjct: 238 LK-----------------------ANGVLKDIIIDNELVDTVPADSRAQVIFDKTPFYA 274

Query: 523 EAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           E GGQ+ D G        +  ++ DVQ    G  +H     + + R E +  L +D    
Sbjct: 275 EMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKEMTR-ENTYSLEVDVAFH 333

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            ++  NH+ATHLL  AL  +LGSH  Q GS + P  LRFD T+   +T+ +LK IED VN
Sbjct: 334 NKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIEDIVN 393

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALL 668
             I +N+ V T + ++E A   G   L+
Sbjct: 394 AKIWENIQVETVVTDKESAEKDGCYCLI 421


>gi|316968240|gb|EFV52543.1| alanine--tRNA ligase [Trichinella spiralis]
          Length = 562

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/455 (34%), Positives = 243/455 (53%), Gaps = 52/455 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60
           N   +R TF+++F+K  H ++ SSS+I      ++FT++G+V F++I +    PV     
Sbjct: 108 NSRKVRQTFVDYFKKWDHVVVESSSMIAPKQSGMLFTSAGVVQFRSIISNINGPVQTQFR 167

Query: 61  -------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERA-IQLAWD 112
                    + QKC R     NDL++VG+   HHTFFEMLGN+SF G   ++A     W 
Sbjct: 168 PRDHLGLAVSFQKCARV----NDLNSVGKDRTHHTFFEMLGNWSFNGTMSKQAVCNHVWQ 223

Query: 113 LLTKEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
           LLTK + +D++RL++T +  D        EE  ++W  + G+   +++     +NFWS+ 
Sbjct: 224 LLTKIYSIDEQRLHVTYFGGDQQLGLDADEECKRIWLDVVGVQQCRLLTGNAEENFWSIG 283

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI                       E+WN+VFM++ +        LP   +
Sbjct: 284 ETGPCGPCTEIHVQLP-------------DGTLSELWNVVFMEYYKHEDGSLRKLPATHV 330

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+  VLQ + + Y  DLFK LI + +Q+TG                  + R+I
Sbjct: 331 DTGMGLERLCAVLQNEDSAYGTDLFKPLIDSCQQLTGSPPYEGRFGVDDVTGLDSSFRII 390

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMG 334
           VDH R  +F IADG+ P ++  G+VLR+I+RRA+ +  LLG   P +   L  A+     
Sbjct: 391 VDHARMCTFAIADGLKPGHQEAGHVLRKIIRRALYHVSLLGEPRPGVFPKLCSAVVDLYA 450

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
             YP+L  ++LLI + L  E++RF  TL +     D +       E ++    F  Y+T+
Sbjct: 451 DTYPQLQSSRLLINQVLLEEEKRFSTTLTKAKARFDRM------QEPIDSKAMFLFYNTY 504

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429
           GLP++++Q++   RGL   D+  F Q L+EQR R+
Sbjct: 505 GLPMEMVQNLAERRGLP-FDLHQFEQQLQEQRRRS 538


>gi|300705740|ref|XP_002995226.1| hypothetical protein NCER_101964 [Nosema ceranae BRL01]
 gi|239604171|gb|EEQ81555.1| hypothetical protein NCER_101964 [Nosema ceranae BRL01]
          Length = 337

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 138/315 (43%), Positives = 200/315 (63%), Gaps = 9/315 (2%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            V  ++  F  +F+  GHE++ SSS+IP NDP+L+FTNSGMV FKNI  GQE    +   
Sbjct: 5   TVKKLKRAFFSYFKSKGHEIIKSSSVIPSNDPSLLFTNSGMVQFKNILMGQET-NLKRAC 63

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           ++Q+C+RAGGKHNDLD+VG+   HHTFFEM+GN+SFG YFK+ AI+ AWD L     L+Q
Sbjct: 64  SIQRCIRAGGKHNDLDDVGKDTYHHTFFEMMGNWSFGDYFKKEAIEYAWDFLVNILKLEQ 123

Query: 123 RRLYITVYDEDE-EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
            RLY+T Y + + E++ +WK+   L +++II    NDNFW M +TGPCGPC+EI +D+  
Sbjct: 124 DRLYVTYYKDMDSESYNIWKEF--LPSERIIEADKNDNFWEMGDTGPCGPCTEIHYDRIG 181

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241
                    +++    IEIWN+VF+++ +        L +  IDTG+G ER+ ++L    
Sbjct: 182 GRDASR-LVNQDDPDVIEIWNIVFIEYNRTPTG-LEPLERKCIDTGIGFERLLSILNNVK 239

Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
           +NY  + F  +I+  E +T  KYE          R + DH R+ +  + D +  +NEG+G
Sbjct: 240 SNYLTNCFIPIIKNIENMTDKKYEDKLTIEDTAFRAVSDHCRTIAVCLIDNVEFSNEGQG 299

Query: 299 YVLRRIMRRAMCYAR 313
           YVLRRI+RRA+ YA 
Sbjct: 300 YVLRRILRRAVRYAH 314


>gi|153869734|ref|ZP_01999269.1| alanyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152073804|gb|EDN70735.1| alanyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 357

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 135/360 (37%), Positives = 209/360 (58%), Gaps = 13/360 (3%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D QK    + VH   +  G +     L   ID + R+  + +HSATHLLH AL  ILG 
Sbjct: 2   FDTQK-MGKVHVHLGQLTAGTIHIGDQLQAQIDAEARQATARHHSATHLLHAALRQILGE 60

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           HV Q GS + P+ LRFD +H +PITS +L +IE  VN+ I  N+PV TR+M+ E+A+ SG
Sbjct: 61  HVKQKGSLVEPERLRFDFSHFEPITSEQLANIERLVNEQILLNIPVQTRLMSLEEAMNSG 120

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           A AL G KY+++VRV+S+     G  S+ LCGGTHV   G+I L  IV+E+   AGIRRI
Sbjct: 121 AMALFGEKYDEQVRVLSM-----GDFSTELCGGTHVRQVGDIGLFKIVAETGTAAGIRRI 175

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EAITG RA   +   +++L  +   LK +Q ++  RV ++ E  R  +   ++ + +L  
Sbjct: 176 EAITGIRALDWVAETEKQLNVIGDLLKTNQNSLTERVAQLIEYNRNYEKEISRLQAKLAS 235

Query: 784 E-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                      +I  +  ++  +  +D K+L++ +D L+ K+ + +++L  + K+ K S+
Sbjct: 236 NQGSDLASQAVEINGIKILAAQLDNIDVKQLRNTLDQLKNKLGTAVVVL-SLVKDNKISL 294

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  VT+D  D+  A +L    AK + GG GGGRP MAQ GG + +K   A+  V  ++++
Sbjct: 295 VAGVTKDATDKIKAGELLNYVAKQV-GGKGGGRPDMAQGGGNDPSKLTPALQSVTQWVEE 353


>gi|289762725|ref|ZP_06522103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis GM 1503]
 gi|289710231|gb|EFD74247.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis GM 1503]
          Length = 494

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 155/515 (30%), Positives = 238/515 (46%), Gaps = 50/515 (9%)

Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462
           ++    GL  +D I F + + EQR RA+A +        +   +      GAT+F G+D 
Sbjct: 2   EMAAETGL-QVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDE 60

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE--------AVSGQKVEVV 514
           LR                         + +  I   G+ V          A  GQ+VE+V
Sbjct: 61  LRS-----------------------QARILGIFVDGKRVPVVAHGVAGGAGEGQRVELV 97

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            D+TP YAE+GGQ+ D G   G G     R  +TDVQK A+ ++VH   VE G      +
Sbjct: 98  LDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDT 157

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++  +D   RR  +  HS TH++H AL  +LG +  Q GS   P  LRFD     P+T  
Sbjct: 158 VIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDD 217

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +   +E+  N+ +  +  V T     + A A GA AL G  Y D VRVV +    GG  S
Sbjct: 218 QRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEM----GGPFS 273

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LCGGTHVS+T +I  + I+ ESSI +G+RR+EA  G  +  HL  +   +  LAS LK
Sbjct: 274 LELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLK 333

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EV 804
           V    V  RV  + E  R  +    + ++               +I +V  ++  +S  +
Sbjct: 334 VPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGM 393

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLARLSAK 861
            + +L+S++  ++ K+ S   ++  I++ +  +V   V  +         A DL +  A 
Sbjct: 394 TAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAV 453

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +  G GGG+  +AQ  G N    D A+  V S +
Sbjct: 454 AVE-GRGGGKADLAQGSGKNPTGIDAALDAVRSEI 487


>gi|307069566|ref|YP_003878043.1| putative alanyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
 gi|306482826|gb|ADM89697.1| putative alanyl-tRNA synthetase [Candidatus Zinderia insecticola
           CARI]
          Length = 426

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 156/436 (35%), Positives = 245/436 (56%), Gaps = 26/436 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             +  +R  FL F++K  H ++P  +L   N+  LMF NSGM+ FK  F G+ K  Y+ +
Sbjct: 1   MKLKVVRNKFLNFYKKKKHIIMPHINL-KLNENKLMFVNSGMIQFKKFFLGR-KSKYKRI 58

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ C R  GKHND + +G TN HHT FEMLGN+SF  YFK  A+   W+LL  +F ++
Sbjct: 59  CNVQPCFRVSGKHNDFEKIGYTNIHHTLFEMLGNWSFRNYFKYDALFWTWELLINKFKIN 118

Query: 122 QRRLYITVYDEDEEAFKLWKKI------SGLSADKIIRITTNDNFWSM-AETGPCGPCSE 174
           +++++IT+++ D E + +W+KI           +   +   N+NFW +    GPCG CSE
Sbjct: 119 EKKIWITIHENDFETYNIWRKIGISNKRIIKKKNIKKKFFLNENFWEISNNNGPCGTCSE 178

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS---IDTGMGLE 231
           IF+D G+           + +RY+EI N VF+Q++++    ++IL K+    ID G+GLE
Sbjct: 179 IFYDMGKKY-------KLKNQRYVEICNNVFLQYKKKLYNNKYILNKLKYNYIDVGIGLE 231

Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291
           R+ ++LQ   +NY IDLFK +I        +K    NI + ++I DH+RS+ FLI++ I 
Sbjct: 232 RLTSILQNVNSNYKIDLFKKIINKISDKIKIK----NINSLKIISDHIRSACFLISEKIY 287

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
           P+N   GY+LR+I+RRA+          P    +   L  EM   YP L + K  I+  +
Sbjct: 288 PSNNKHGYILRKIIRRAIREGYKSNIKNPFFYKISSILIKEMEDFYPFLKKNKNNIKNVI 347

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411
           + E+E+F      G+ +L+  L    K   L+G  AFKLYDT+G P+++++DI     + 
Sbjct: 348 KKEEEKFFNIYKIGIRILNNELKKCSKK--LDGKFAFKLYDTYGFPIELLEDICLKNKIL 405

Query: 412 GIDIISFNQALEEQRS 427
                 F   + +Q++
Sbjct: 406 IKKKE-FFYEMNKQKN 420


>gi|298242617|ref|ZP_06966424.1| Alanine--tRNA ligase [Ktedonobacter racemifer DSM 44963]
 gi|297555671|gb|EFH89535.1| Alanine--tRNA ligase [Ktedonobacter racemifer DSM 44963]
          Length = 445

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 146/443 (32%), Positives = 242/443 (54%), Gaps = 24/443 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + S I   +L +F+ +GH  LPS+ L +P N  +  F  +GM P       +  P    +
Sbjct: 6   SSSQIVERYLSYFRGHGHYELPSTPLAVPGNSTS--FIIAGMQPLLPYLRAETLPPSPRL 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           ++VQ+C+R     +D++ VG  +R  + F MLGN+S G Y+K  AI++A ++L +  +++
Sbjct: 64  SSVQRCLRT----DDVEAVGSNDRKMSAFLMLGNWSIGEYWKREAIEMALEVLLQHLEVE 119

Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPC 172
           + RL++TVY          D+EA   W ++ G+ +++I+ + + DN W+M    GPCGP 
Sbjct: 120 RERLWVTVYAGDEPLGLPGDDEAISEWLRV-GMPSERIVSLGSEDNLWTMGEGPGPCGPS 178

Query: 173 SEIFFDQGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230
           SEIF D+G  +  G        + ER++E+WNLVFMQ+E+        LP+ +IDTGMGL
Sbjct: 179 SEIFVDRGMELGCGRATCRPGCDCERFMEVWNLVFMQYERHADGSLTTLPQRNIDTGMGL 238

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290
           ER+AT+LQ   + +  D+F   ++   ++   + EG      R+IVDH+R+        +
Sbjct: 239 ERIATILQGAESVFSTDVFLPALERLRELVP-EQEGEVRRTRRMIVDHMRAVLLAGLVDV 297

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY-PELIQAKLLIEE 349
            P  +GR  V+RR++RRA C  R+LG  +P +  LL  L    GS   P+       + +
Sbjct: 298 RPGRDGRSSVVRRLIRRAACQGRVLGLEQPFLGELLSPLAEGHGSLLMPQEHSQVQGLVQ 357

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            + +E+  F + L +GL LL+ V     +   ++G V F+L+   G P D+  +IL  RG
Sbjct: 358 VVTNEERMFSRVLTQGLSLLEHV--EANERGYVDGRVLFQLHAERGFPADLAAEILVERG 415

Query: 410 LAGIDIISFNQALEEQRSRARAH 432
           L+ ID   + QA ++    +R  
Sbjct: 416 LS-IDWQRYEQARQQHSQVSRVS 437


>gi|67479233|ref|XP_654998.1| alanyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56472100|gb|EAL49612.1| alanyl-tRNA synthetase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 980

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 178/817 (21%), Positives = 306/817 (37%), Gaps = 159/817 (19%)

Query: 21  ELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
             +    ++      + F  +G+  F+    TGQ +P    +   Q C+R     NDLDN
Sbjct: 110 TAIKRYPVVARWRNDVDFVAAGIYCFQPYCVTGQLEPPANPLICPQFCLR----FNDLDN 165

Query: 80  VGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
           +G + RH + F M+G   F       YFKE  +      LTKE +++   +         
Sbjct: 166 IGISGRHFSGFIMIGLQVFNSPQKYVYFKEECVDYNLRWLTKELEIELDDI--------- 216

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
                               T  ++ W     G  GP  E+F                  
Sbjct: 217 --------------------TLIEDVWCGG--GNLGPSIEMFV----------------- 237

Query: 195 ERYIEIWNLVFMQFEQQN--KQERFILPKMSIDTGMGLERMATVLQEKTNNY-------- 244
            + +E+ N+VF Q++  +  K E   L    ID G+GLER+  ++     +Y        
Sbjct: 238 -KGLEVGNMVFTQYKILDFVKGEFEPLKHQVIDVGIGLERIPWLINGTPTSYLEAFPGAV 296

Query: 245 -----------DIDLF---------------KHLIQASEQVTG---------MKYEGNNI 269
                      + D+                K + +A   +           ++      
Sbjct: 297 KYLQSKLGVTLESDVISKFAPYCCLLNLDECKDVNKAWADIAKECGVENREVLQKAIQPA 356

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL-----MMH 324
            +  +I DH R+    I DG LP+  G G  LR I+RR        G+ E L     +M 
Sbjct: 357 RDLYIIADHSRTMLIAIYDGALPSAVGGGANLRNIVRRMFSILAKNGWWEKLGGMDGLME 416

Query: 325 LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNG 384
           L      ++   Y +  + K    + +  E +R+  T       +  +L    K  +L  
Sbjct: 417 LFECHKKDLEKIYGKFDEYKSF-RKIIEMEYQRWCTTDIESQQKVQTLLK--KKKGVLTV 473

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
           D       ++GL  D + +I                                     + +
Sbjct: 474 DDWIFAMKSYGLSPDKINEI-------------------------------SKLPIPDNL 502

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
           +  L E       +    L  +  + E +++  +    DL    S IV  +    E V+E
Sbjct: 503 YTKLAELEDQRVKMLPTELYETADIPETKELFYENG--DLREFNSEIVSIL----EKVDE 556

Query: 505 AVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
              G  V   V+  ++ FY   GGQ  DTG    DG+   +T V+K  + I  H     +
Sbjct: 557 KGKGTGVHNLVILKESAFYPIGGGQDNDTGKIKIDGVIYDVTYVEKVGKCILHHINSDLK 616

Query: 563 GILR-TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                    +   +D Q R QL  +H+ATH++H A   +LG HV QNG+  T +    D+
Sbjct: 617 NWNELKGQVVTGYVDDQRRNQLRAHHTATHIIHQAAHQVLGPHVWQNGAKKTVEEAHLDI 676

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVV 679
           TH   IT  E  +IE   N++I ++L +   ++++E+A      +L   G    + VR+V
Sbjct: 677 THFSSITREEENAIEKLANEMIRKSLKINKFVLSKEEAEKRYGFSLYQGGVVAGNEVRIV 736

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +       + +  C GTH  +T ++ L+ I+  + I  G+ RI  + G  A  ++  + 
Sbjct: 737 DISG-----YDTEACCGTHCDNTSQVGLIRIIKTNRISDGVVRIRFVAGDAAYKNMAMEK 791

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             +  L     V    +   +E I+ +Y+KL    +K
Sbjct: 792 NLINDLCDSYSVLPEVLQPTLERIFTDYKKLTKQSSK 828


>gi|229553797|ref|ZP_04442522.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
 gi|229312820|gb|EEN78793.1| possible alanine--tRNA ligase [Lactobacillus rhamnosus LMS2-1]
          Length = 476

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 150/505 (29%), Positives = 236/505 (46%), Gaps = 41/505 (8%)

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
           +  +     GL  +D+  F + +  QR RAR       S  ++     L +    ++F G
Sbjct: 1   MTNEYAEDEGLK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDTV--LMDITTPSKFTG 57

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           +  L                          + ++AIV   ++ +E  +GQ  +++FD+TP
Sbjct: 58  WTELDHKH----------------------ATLQAIVVDDQLQDEVSTGQ-AQLIFDETP 94

Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           FYAE GGQ+ D G        +  ++TDVQ    G  +H   V +G L       L++D 
Sbjct: 95  FYAEMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTV-KGKLTKGQPYWLSVDR 153

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R+++S+NH+ATHLL  AL  +LG H  Q GS + PD LRFD T+   +T  +L+ +E 
Sbjct: 154 LRRKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVET 213

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  I   LP+  + M   +A   GA A+ G KY D VR+VS+     G ++    GGT
Sbjct: 214 IVNQKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGT 268

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756
           H ++T  + L  I SES I AG+RR+EA+T + A  +L  Q + LK  A  LK+ Q  NV
Sbjct: 269 HPTNTNALGLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNV 328

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKS 811
             +V ++  + +  Q   A  + +L  +           +     +   +      EL+ 
Sbjct: 329 PSKVTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDHAETVGGFKLIDKQVQVAGMNELRQ 388

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           + D  + K  S I++L   +  K   ++            A DL +  A  +GGGGG GR
Sbjct: 389 LADEWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGGGG-GR 447

Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896
           P MAQ+GG        A+A   + +
Sbjct: 448 PDMAQAGGKKPAGIPAALAEAKNVI 472


>gi|149002766|ref|ZP_01827692.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759060|gb|EDK66054.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 426

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/412 (34%), Positives = 216/412 (52%), Gaps = 20/412 (4%)

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534
           +  +      T+ +SS + AIV     V     G    ++F +T FYAE GGQ+ D G  
Sbjct: 14  ITVESVFNYNTSQLSSKLVAIVADNAEVGAVSEG-TASLIFAETSFYAEMGGQVADYGQI 72

Query: 535 IGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
           + +  ++   +T+VQK   G  +H   V    L       L ID   R ++  NH+ATHL
Sbjct: 73  LDESGKIVATVTNVQKAPNGQALHTVEVL-APLALNQEYTLAIDSNRRHRVMKNHTATHL 131

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           LH AL  ILG+H +Q GS    + LRFD TH + +T+ EL++IE  VN+ I + L V T 
Sbjct: 132 LHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQQVNEKIWEALEVKTV 191

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
             + + A   GA AL G KY   VRVV++     G +S  LCGGTHV +T EI L  IV 
Sbjct: 192 ETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGTHVGNTSEIGLFKIVK 246

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771
           E  I +G RRI A+TG+ A      Q++ LK++A+ LK  Q   V  +VE + E+ R+LQ
Sbjct: 247 EEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEVPHKVEGLQEQLRQLQ 306

Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
             +A+ K +              ++    +++  +S  D+  L++  D  ++K  S +++
Sbjct: 307 KENAELKEKAAAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRTFADNWKQKDYSDLLV 366

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           LV    +K   ++   T+DL    +A +L +  A ++  G GGG+P MA +G
Sbjct: 367 LVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGKPDMAMAG 413


>gi|167388190|ref|XP_001738467.1| Alanyl-tRNA synthetase [Entamoeba dispar SAW760]
 gi|165898303|gb|EDR25208.1| Alanyl-tRNA synthetase, putative [Entamoeba dispar SAW760]
          Length = 980

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 175/817 (21%), Positives = 304/817 (37%), Gaps = 159/817 (19%)

Query: 21  ELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
             +    ++      + F  +G+  F+    TGQ +P    +   Q C+R     NDLDN
Sbjct: 110 TAIKRYPVVARWRNDVDFVAAGIYCFQPYCVTGQLEPPANPLICPQFCLR----FNDLDN 165

Query: 80  VGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
           +G + RH + F M+G   F       YFKE  +      LTKE +++   +         
Sbjct: 166 IGISGRHFSGFIMIGLQVFNSPQKYVYFKEECVDYNLRWLTKELEIELDDI--------- 216

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
                               T  ++ W     G  GP  E+F                  
Sbjct: 217 --------------------TLIEDVWCGG--GNLGPSIEMFV----------------- 237

Query: 195 ERYIEIWNLVFMQFEQQN--KQERFILPKMSIDTGMGLERMATVLQEKTNNY-------- 244
            + +E+ N+VF Q++  +  K E   L    ID G+GLER+  ++     +Y        
Sbjct: 238 -KGLEVGNMVFTQYKILDFVKGEFEPLKHQVIDVGIGLERIPWLINGTPTSYLEAFPGAV 296

Query: 245 -----------DIDLF---------------KHLIQASEQVTG---------MKYEGNNI 269
                      + D+                K + +A   +           ++      
Sbjct: 297 KYLQSKLGVTLESDVISKFAPYCCLLNLDECKDVNKAWADIAKECGVENREVLQKAIQPA 356

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL-----MMH 324
            +  +I DH R+    I DG LP+  G G  LR I+RR        G+ E L     +M 
Sbjct: 357 RDLYIIADHSRTMLIAIYDGALPSAVGGGANLRNIVRRMFSILARNGWWEKLGGMDGLME 416

Query: 325 LLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNG 384
           L      ++   Y +  + K    + +  E +R+  T       +  +L    K  +L  
Sbjct: 417 LFEFHKKDLEKIYGKFDEYKSF-RKIIEMEYQRWCTTDMESQQKVQTLLKK--KKGVLTV 473

Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444
           D       ++GL  D + +I                                     + +
Sbjct: 474 DDWIFAMKSYGLSPDKINEI-------------------------------SKLPVPDNL 502

Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504
           +  L E       +    L  +  + E +++  +   +   N     V       E V+E
Sbjct: 503 YTKLAELEDQRVKMLPTELYETADIPETKELFYENGNLREFNSEIVSVL------EKVDE 556

Query: 505 AVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
              G  +   V+  +T FY   GGQ  DTG    DG+   +T V+K  + I  H     +
Sbjct: 557 KGKGTGIHNLVILKETAFYPIGGGQDNDTGKIKIDGVIYDVTYVEKVGKCILHHINSDLK 616

Query: 563 GILR-TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                    ++  +D Q R QL  +H+ATH++H A   +LG HV QNG+  T +    D+
Sbjct: 617 NWEELKGKMVIGYVDDQRRNQLRAHHTATHIIHQAAHQVLGPHVWQNGAKKTVEEAHLDI 676

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVV 679
           TH   IT  E  +IE   N++I ++L +   ++++E+A      +L   G    + VR+V
Sbjct: 677 THFSSITREEENAIEKLANEMIRKSLKINKFVLSKEEAEKRYGFSLYQGGVVAGNEVRIV 736

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +       + +  C GTH  +T ++ L+ I+  + I  G+ RI  + G  A  ++  + 
Sbjct: 737 DISG-----YDTEACCGTHCDNTSQVGLIRIIKTNRISDGVVRIRFVAGDAAYKNMAMEK 791

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
             +  L     V    +   +E I+ +Y+KL    +K
Sbjct: 792 NLINDLCDSYSVLPEVLQPTLERIFTDYKKLTKQSSK 828


>gi|145492553|ref|XP_001432274.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399384|emb|CAK64877.1| unnamed protein product [Paramecium tetraurelia]
          Length = 954

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 174/822 (21%), Positives = 312/822 (37%), Gaps = 163/822 (19%)

Query: 21  ELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
             +    ++      + +  +G+  F+    TG+  P    +   Q CVR     NDLDN
Sbjct: 118 TAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQFCVR----FNDLDN 173

Query: 80  VGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
           +G T RH++ F MLG  +F       +FKE  ++  +  LT+E +++   +         
Sbjct: 174 IGLTGRHYSGFIMLGIQTFNYPDKYVFFKEECVEFNYRWLTEELEINPDDI--------- 224

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
                               T  ++ W+    G  GP  E F +                
Sbjct: 225 --------------------TFIEDVWAGG--GNLGPSVEYFVNG--------------- 247

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
              +E+ N+VFMQ++  +      LP   IDTG+GLER+  ++     +Y  D+F     
Sbjct: 248 ---LEVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLERIPWLVNGTPTSY-FDVFAGAFA 303

Query: 255 ASEQVTGMKY-------------------------------------------EGNNIVN 271
              Q   ++Y                                           E   + +
Sbjct: 304 FLAQKLQVEYSNDVWKAFGPYSCLLNVDEVENVDKTWEFISSQIGYDVQTIKKEIEQLKD 363

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA-LC 330
             +I+DH R+   ++ DG LP+N G G  +++  ++++C        E L+  +    + 
Sbjct: 364 MYIILDHTRTVMMVVTDGSLPSNVGGGSNIQKYHQKSICSVE----EEQLVGQIRNGWII 419

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            ++   Y    + K   ++ ++ E ER+ KT D   V L+ +L    ++  L+ D     
Sbjct: 420 NDLAKLYGPFGEYKSF-DQIIKQEYERWAKTDDDKKVKLEKLLKQ--RNNQLSIDDWIFA 476

Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450
             THG+P D +  I                                       ++  L +
Sbjct: 477 MSTHGIPADTISQI-------------------------------SKLPIPGNLYAELAD 505

Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
           +          +L  +  ++E   +  Q P           + + VQQ  +         
Sbjct: 506 RAARITKAPEAILYNTVHLQETTNLYYQTPKDGKFQAKIVTIFSNVQQQNLPN------- 558

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT--- 567
             V+ +Q+ FY   GGQ  D G     G R  + +VQK   G  V H + +         
Sbjct: 559 -IVILNQSAFYPFGGGQDFDQGWLTIQGERHFVNNVQKV--GKVVLHILEKPLPNAVDTY 615

Query: 568 -EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   ID + R  L  +H+ATH++  A   +LG HV QNG+  +      D+TH  P
Sbjct: 616 VGQEVQAEIDLERRSILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVHNAHLDITHFAP 675

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYE 684
           ++  + ++IE+ VN II     +    MN+ DA       L   G    + +RVV+++  
Sbjct: 676 LSKEQEQAIENEVNKIILSAKQINKGFMNKADAEKEYGFRLYQGGIVPGNELRVVNIDGI 735

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        C GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E + S
Sbjct: 736 D-----VEACCGTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEMINS 790

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           L     +S+  +V    +I++E +  +  + + K +L    L
Sbjct: 791 LVKLWSISKTQLVEEGSKIFQEKKHYESAYNQLKAELIKSQL 832


>gi|152002522|dbj|BAF73546.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 430

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 235/475 (49%), Gaps = 61/475 (12%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
           MLGNFS G YFK+ AI  A++LLT  K F     +LYIT + +D++ ++ W  + G+  +
Sbjct: 1   MLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEKLYITYFFQDQDTYQYWLDL-GVEKN 59

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSEEGERYIEIWNLVFM 206
            +I +    NFW +   GP GPC+EIFFD+G+        L     E +R+IEIWN+VF 
Sbjct: 60  HLIPL--KSNFWQIG-PGPSGPCTEIFFDRGKTFDSRNKELIIQDLENDRFIEIWNIVFS 116

Query: 207 QFEQQNK---QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263
           Q+    K   ++   LP  +IDTG GLER+A +LQ    N++ DLF  LI+A E++T +K
Sbjct: 117 QYNCDPKLPIEKYQELPSKNIDTGAGLERLACILQNTKTNFETDLFFPLIKALEKMTQIK 176

Query: 264 YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323
           Y G    + ++I DHL++  F I DG +  NE RGYVL++++RRA    + LG  +P + 
Sbjct: 177 YTGQE--SFKIITDHLKTLVFAINDGAVLTNEKRGYVLKKLLRRAANEGKKLGLDKPFLH 234

Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
            L+P     M   Y EL   + +I + L  ++  F +TL          L HL ++  L+
Sbjct: 235 QLVPPTVAMMKDFYKELCTNQEMIAKVLLQQENIFEQTLKTAEKTF---LQHLTQN-TLS 290

Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
           G   FKLYDT+G+P D++ D    + +   D   F + L + ++ ++ +         ++
Sbjct: 291 GKNFFKLYDTYGIPEDLILDYAKKKNITT-DYQKFQELLHDHQNLSKQNQTSQTHMNKQE 349

Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503
              +  +    ++FIGY                             + V  +  +G    
Sbjct: 350 --EAFLQFLTPSEFIGY-----------------------TNFTCKTKVIKVFDKG---- 380

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
                    +V ++TPFYA  GGQ+ D G         ++T + K   G  +H  
Sbjct: 381 ---------IVLEKTPFYANMGGQIEDGGWIDNT----KVTKITKLPNGQILHEV 422


>gi|145488850|ref|XP_001430428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397526|emb|CAK63030.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1159

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 180/885 (20%), Positives = 322/885 (36%), Gaps = 170/885 (19%)

Query: 21   ELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
              +    ++      + +  +G+  F+    TG+  P    +   Q CVR     NDLDN
Sbjct: 316  TAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQFCVR----FNDLDN 371

Query: 80   VGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
            +G T RH++ F MLG  +F       +FKE  ++  +  LT+E +++   +         
Sbjct: 372  IGLTGRHYSGFIMLGIQTFNYPEKYVFFKEECVEFNYRWLTEELEINPDDI--------- 422

Query: 135  EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
                                T  ++ W+    G  GP  E F +                
Sbjct: 423  --------------------TFIEDVWAGG--GNLGPSVEYFVNG--------------- 445

Query: 195  ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254
               +E+ N+VFMQ++  +      LP   IDTG+GLER+  ++     +Y  D+F     
Sbjct: 446  ---LEVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLERIPWLINGSPTSYH-DVFAGAFA 501

Query: 255  ASEQVTGMKY-------------------------------------------EGNNIVN 271
               +   ++Y                                           E   + +
Sbjct: 502  YLSEKLQVQYSNEVWKAFGPYSCLLNVDEIENVDKTWEYISTQIGYDVPTIKKEIEQLKD 561

Query: 272  HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL----MMHLLP 327
              +I+DH R+   ++ DG LP+N G G  +R I+RR     +   + E L    ++ L  
Sbjct: 562  MYIILDHTRTVMMVVTDGSLPSNVGGGSNIRNIIRRVFAVLKKNSWWEKLGMDGLLQLFQ 621

Query: 328  ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387
                ++   Y    + K   +  ++ E ER+ KT D     +        K+  L+ D  
Sbjct: 622  EHKNDLAKLYGPFGEYKSF-DLIIKQEYERWAKTDDD--KKVKLEKLLKQKNNQLSIDDW 678

Query: 388  FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447
                 THG+P D +  I                                       ++  
Sbjct: 679  IFAMSTHGIPADTISQI-------------------------------SKLPIPGNLYAE 707

Query: 448  LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507
            L ++          +L  +  + E   +  Q P     N     + + VQQ  +      
Sbjct: 708  LADRAARITKAPEAILYNTVHLPETVNLYYQTPKDGKFNAKIVTIFSNVQQQNLPN---- 763

Query: 508  GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR- 566
                 V+ +Q+ FY   GGQ  D G     G R  + +VQK  + +           +  
Sbjct: 764  ----IVILNQSAFYPFGGGQDYDQGWLTIQGERHFVNNVQKVGKVVLHILDKPLSDPIDT 819

Query: 567  -TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                 ++  ID   R  L  +H+ATH++  A   +LG HV QNG+  + +    D+TH  
Sbjct: 820  YVNQEILAEIDLDRRTILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVNNAHLDITHFA 879

Query: 626  PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEY 683
            P+T  + ++IE+ VN II     +    M++ DA       L   G    + +RVV++E 
Sbjct: 880  PLTKEQEQNIENEVNKIILSARQINKGFMSKSDAEKEYGFRLYQGGIVPGNELRVVNIEG 939

Query: 684  EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             D        C GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E + 
Sbjct: 940  ID-----VEACCGTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEMIN 994

Query: 744  SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
             L     +S+  +V    +I++E +  +  +   K +L         + D   +  II  
Sbjct: 995  QLVKLWSISKNQLVEEGSKIFQEKKHYETAYNSIKAELIKS--QMKYVIDGPNLKTIIQS 1052

Query: 804  VDSKE------LKSVMDALQKKIQSGIIM----LVGISKEKKASV 838
             ++        +   +  L+   +  I +    L G   +   +V
Sbjct: 1053 NETNPTAYFSEIGKYIQQLKDSKKGLIFVADTFLYGAFGDGNFNV 1097


>gi|157813836|gb|ABV81663.1| putative AATS-ALA protein [Triops longicaudatus]
          Length = 314

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 20/316 (6%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKIS 144
           LGN+SFG YFK+     AW+LLT+ F L + RLY+T +          DEE  ++W  + 
Sbjct: 1   LGNWSFGDYFKKEVCTWAWELLTEVFKLPKDRLYVTYFGGHPETGLQSDEECRQIWLSL- 59

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
           GL +++I+  +  DNFW M ETGPCGPCSEI FD+           + +    +EIWNLV
Sbjct: 60  GLPSERILPGSMKDNFWEMGETGPCGPCSEIHFDRIGG-RDAAHLVNMDDPDVLEIWNLV 118

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           FM F ++       LPK  ID GMG ER+ +V+Q+K +NYD DLF  +  A ++ TG K 
Sbjct: 119 FMTFNRETDSSLKPLPKRHIDCGMGFERLVSVIQDKRSNYDTDLFAPIFAAIQKGTGAKP 178

Query: 265 EGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RL 314
                         + +RV+ DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   
Sbjct: 179 YSGKVGKEDADGVDMAYRVLADHARTLTIALSDGGRPDNVGRGYVLRRILRRGVRYATEK 238

Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374
           +         L+P +   +G  +PE+ +   L+ + +  E+ +F KTL+RG  LL+  ++
Sbjct: 239 MQAKPGFFASLVPTVVEVLGDTFPEVTRDPELVMDIINDEEAQFLKTLNRGRSLLERTIA 298

Query: 375 HLGKDEILNGDVAFKL 390
            LG  + L GD+A++L
Sbjct: 299 KLGNQKTLPGDIAWRL 314


>gi|159108361|ref|XP_001704452.1| Alanyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157432515|gb|EDO76778.1| Alanyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 969

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 182/852 (21%), Positives = 320/852 (37%), Gaps = 164/852 (19%)

Query: 3   NVSSIRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQ 59
           ++  +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P   
Sbjct: 87  SMRRVWNSFAQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPAN 146

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+   +  
Sbjct: 147 PLIQPQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE-- 200

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                                    W +  G+  D++   T   + W+    G  GPC E
Sbjct: 201 -------------------------WLQTMGIDLDEV---TLIADVWAGG--GNLGPCVE 230

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            F                     +E+ N+VFM+F+         LP   +D G+GLER+ 
Sbjct: 231 YFM------------------HGLEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIP 272

Query: 235 TVLQEKTNNY-------------------------------------DIDLFKHLIQASE 257
            +L     +Y                                     +ID    + QA  
Sbjct: 273 WLLNRSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWA 332

Query: 258 ---QVTGMKYEG-----NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              + TG+  E        +    +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 333 LIKERTGLTTEDITNVIEPVRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 392

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ--------AKLLIEETLRSEDERFGKT 361
                 G+ + +    +  LC  +     +L +            +   L  E  R+  T
Sbjct: 393 HILVSRGWWDAIGG--IDGLCQIIDYHRQDLEEVHGAGSFPPFKPLRAVLELEYTRWTTT 450

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
                  ++ +L        L+ +    +  T GL  D + ++    G+      +    
Sbjct: 451 DKDARDKVEKLLK--KGKGHLSIEDWVTIVTTFGLNADQVSELT---GIPV--PENLYSH 503

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+ +               I  ++ + Y                   D     +   
Sbjct: 504 VAEQQEK-------------NAIKVAVAQLYD-----------TVSLPPTDCVYYTKPYG 539

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538
             L     + V +I    E      S  +  V+ D+T FY  +GGQ  DTG     +G+G
Sbjct: 540 EKLRKLADAKVVSIFANMED----KSKGRNLVILDKTVFYPTSGGQQHDTGVLKFLLGNG 595

Query: 539 IRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             +   + DV+K    +           +    S+ + ID   R QL  +H+A H++H  
Sbjct: 596 KMIIHDVVDVRKVGHCVMHELNAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHAT 655

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            + +LG HV Q G+  T +    D+TH + +T  E ++IE   N +I  N+P+    + +
Sbjct: 656 ANKVLGPHVWQAGAKKTTEVATLDITHYRSLTFDEERAIEREANRMIRDNIPIRKYQLPK 715

Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A      +L   G      VR V +       H +  C GTH+ +TG+I L+ IV  +
Sbjct: 716 NEAEKKYGFSLYQGGVVPGSTVRCVDI-----TDHDTEACCGTHLDNTGKIGLIRIVKST 770

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I  G+ R+  + G+RA      Q E L +      V Q  +V   ++ +   ++L+ + 
Sbjct: 771 RISDGVVRLTFVAGERALDFTDTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLENLT 830

Query: 775 AKRKLQLNVEDL 786
            + + +L   +L
Sbjct: 831 VQLRGELLTSNL 842


>gi|10798907|gb|AAG23137.1|AF245445_1 alanyl-tRNA synthetase [Giardia intestinalis]
          Length = 954

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 182/852 (21%), Positives = 320/852 (37%), Gaps = 164/852 (19%)

Query: 3   NVSSIRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQ 59
           ++  +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P   
Sbjct: 72  SMRRVWNSFAQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPAN 131

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+   +  
Sbjct: 132 PLIQPQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE-- 185

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                                    W +  G+  D++   T   + W+    G  GPC E
Sbjct: 186 -------------------------WLQTMGIDLDEV---TLIADVWAGG--GNLGPCVE 215

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            F                     +E+ N+VFM+F+         LP   +D G+GLER+ 
Sbjct: 216 YFM------------------HGLEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIP 257

Query: 235 TVLQEKTNNY-------------------------------------DIDLFKHLIQASE 257
            +L     +Y                                     +ID    + QA  
Sbjct: 258 WLLNRSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWA 317

Query: 258 ---QVTGMKYEG-----NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              + TG+  E        +    +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 318 LIKERTGLTTEDITNVIEPVRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 377

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ--------AKLLIEETLRSEDERFGKT 361
                 G+ + +    +  LC  +     +L +            +   L  E  R+  T
Sbjct: 378 HILVSRGWWDAIGG--IDGLCQIIDYHRQDLEEVHGAGSFPPFKPLRAVLELEYTRWTTT 435

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
                  ++ +L        L+ +    +  T GL  D + ++    G+      +    
Sbjct: 436 DKDARDKVEKLLK--KGKGHLSIEDWVTIVTTFGLNADQVSELT---GIPV--PENLYSH 488

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+ +               I  ++ + Y                   D     +   
Sbjct: 489 VAEQQEK-------------NAIKVAVAQLYD-----------TVSLPPTDCVYYTKPYG 524

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538
             L     + V +I    E      S  +  V+ D+T FY  +GGQ  DTG     +G+G
Sbjct: 525 EKLRKLADAKVVSIFANMED----KSKGRNLVILDKTVFYPTSGGQQHDTGVLKFLLGNG 580

Query: 539 IRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             +   + DV+K    +           +    S+ + ID   R QL  +H+A H++H  
Sbjct: 581 KMIIHDVVDVRKVGHCVMHELNAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHAT 640

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            + +LG HV Q G+  T +    D+TH + +T  E ++IE   N +I  N+P+    + +
Sbjct: 641 ANKVLGPHVWQAGAKKTTEVATLDITHYRSLTFDEERAIEREANRMIRDNIPIRKYQLPK 700

Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A      +L   G      VR V +       H +  C GTH+ +TG+I L+ IV  +
Sbjct: 701 NEAEKKYGFSLYQGGVVPGSTVRCVDI-----TDHDTEACCGTHLDNTGKIGLIRIVKST 755

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I  G+ R+  + G+RA      Q E L +      V Q  +V   ++ +   ++L+ + 
Sbjct: 756 RISDGVVRLTFVAGERALDFTDTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLENLT 815

Query: 775 AKRKLQLNVEDL 786
            + + +L   +L
Sbjct: 816 VQLRGELLTSNL 827


>gi|223986204|ref|ZP_03636222.1| hypothetical protein HOLDEFILI_03532 [Holdemania filiformis DSM
           12042]
 gi|223961818|gb|EEF66312.1| hypothetical protein HOLDEFILI_03532 [Holdemania filiformis DSM
           12042]
          Length = 397

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 147/401 (36%), Positives = 217/401 (54%), Gaps = 12/401 (2%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V  A+   + EV+ D++ FYAE+GGQ+ D G    D    ++ DV+K     F+HH  V 
Sbjct: 3   VRVAMLEDEGEVILDRSCFYAESGGQVADGGTMSCDEADCEVLDVKKAPHKQFMHHVKVV 62

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G+L+  M L L +D Q R +   NHS  HL+  AL  I+G H++Q GS +  D  RFD 
Sbjct: 63  DGVLKEGMKLQLQVDVQRRIRTMANHSCVHLMQSALKKIVGDHIAQAGSYVCQDYARFDF 122

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           TH + ++  +LK +E  VND +    PV T +M  E+A  SGA AL   KY D VRVVS+
Sbjct: 123 THFEKVSDQQLKEVEALVNDFVMAKFPVHTEVMAIEEAKHSGAIALFDEKYGDEVRVVSM 182

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G  S  LC GTHV +T +I +  IVSE SI +GIRRI A TG  A    + + + 
Sbjct: 183 -----GEVSKELCAGTHVHNTQDIGVFKIVSEESIGSGIRRITAKTGYAAYQEFVSEQDV 237

Query: 742 LKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRKLQLNV--EDLSCHKIADVNFMS 798
           LK++A+ LK++  N V  +V  + EE   L+    +   ++ V   D   +    VN ++
Sbjct: 238 LKTIAAQLKMNSLNGVSEKVAGVLEENAALKKEIGQLNQKMMVFKADDMVNHAEAVNGLN 297

Query: 799 HI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            I   +S +D + +K++ + L+ K +   I L   S+ K   V     E +     A D 
Sbjct: 298 IILEKVSGLDGQAMKNLAETLRNKCEKSFIFLANPSEGKVTYVCACSKEAIAKGIKAGDF 357

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +++A+ +  G GGGRP MAQSGG +G+K D+  A + S L
Sbjct: 358 VKMAAQ-MSQGNGGGRPDMAQSGGKDGSKVDEVFALIRSKL 397


>gi|145525685|ref|XP_001448659.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416214|emb|CAK81262.1| unnamed protein product [Paramecium tetraurelia]
          Length = 975

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 177/813 (21%), Positives = 310/813 (38%), Gaps = 149/813 (18%)

Query: 21  ELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79
             +    ++      + +  +G+  F+    TG+  P    +   Q CVR     NDLDN
Sbjct: 143 TAIDRYPVVARWRNDVDYVAAGIYCFQPFCVTGEMDPPANPLICPQFCVR----FNDLDN 198

Query: 80  VGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
           +G T RH++ F MLG  +F       +FKE  ++  +  LT+E +++   +         
Sbjct: 199 IGLTGRHYSGFIMLGIQTFNYPDKYVFFKEECVEFNYRWLTEELEINPDDI--------- 249

Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
                               T  ++ W+    G  GP  E F +                
Sbjct: 250 --------------------TFIEDVWAGG--GNLGPSVEYFVNG--------------- 272

Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE--------RMATVLQEKTNNYDI 246
              +E+ N+VFMQ++  +      LP   IDTG+GLE          A + Q+    Y  
Sbjct: 273 ---LEVGNMVFMQYKYFHDGSYEELPIKIIDTGIGLELTFDVFAGAFAFLAQKLQVEYSN 329

Query: 247 DLFKHL--------IQASEQVTG---------------MKYEGNNIVNHRVIVDHLRSSS 283
           D++K          +   E V                 +K E   + +  +I+DH R+  
Sbjct: 330 DVWKAFGPYSCLLNVDEVENVDKTWEFISSQIGYDVQTIKKEIEQLKDMYIILDHTRTVM 389

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL----MMHLLPALCTEMGSAYPE 339
            ++ DG LP+N G G  +R I+RR     +   + + L    ++ L      ++   Y  
Sbjct: 390 MVVTDGSLPSNVGGGSNIRNIIRRVFAVLKKNNWWDKLGMDGLLQLFQEHKNDLAKLYGP 449

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
             + K   ++ ++ E ER+ KT D     +        K+  L+ D       THG+P D
Sbjct: 450 FGEYKSF-DQIIKQEYERWAKTDDD--KKVKLEKLLKQKNNQLSIDDWIFAMSTHGIPAD 506

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            +  I                                       ++  L ++        
Sbjct: 507 TISQI-------------------------------SKLPIPGNLYAELADRAARITKAP 535

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
             +L  +  ++E   +  Q P           + + VQQ  +           V+ +Q+ 
Sbjct: 536 EAILYNTVHLQETTNLYYQTPKDGKFQAKIVTIFSNVQQQNLPN--------IVILNQSA 587

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT----EMSLVLTI 575
           FY   GGQ  D G     G R  + +VQK   G  V H + +             ++  I
Sbjct: 588 FYPFGGGQDFDQGWLTIQGERHYVNNVQKV--GKVVLHILEKPLPNAVDTYVGQDVLAEI 645

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  L  +H+ATH++  A   +LG HV QNG+  +      D+TH  P++  + ++I
Sbjct: 646 DLERRSILRNHHTATHIVFAACRRVLGPHVWQNGAHKSVHNAHLDITHFAPLSKEQEQAI 705

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSAL 693
           E+ VN II     +    MN+ DA       L   G    + +RVV+++  D        
Sbjct: 706 ENEVNKIILSAKQINKGFMNKADAEKEYGFRLYQGGIVPGNELRVVNIDGID-----VEA 760

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C GTH  ST E+  + I+    ++ G+ R+  + G +    L  + E + SL     +S+
Sbjct: 761 CCGTHCDSTSEVGWVRILKTQKLQDGVVRLYYVAGVKTIEVLNSEGEMINSLVKLWSISK 820

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
             +V    +I++E +  +  + + K +L    L
Sbjct: 821 TQLVEEGSKIFQEKKHYESAYNQLKAELIKSQL 853


>gi|292558549|gb|ADE31550.1| Alanyl-tRNA synthetase, class IIc [Streptococcus suis GZ1]
          Length = 397

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 141/409 (34%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGI 553
           +      E    GQ   +VFDQTPFYAE GGQ+ D G        I   + DVQK   G 
Sbjct: 1   MADNARTEAVSEGQ-ALLVFDQTPFYAEMGGQVADHGFVKNATGDIVATVIDVQKAPNGQ 59

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +H   +    +    +  L I+ + R+ +  NH+ATHLLH AL  I+G H +Q GS   
Sbjct: 60  PLHTVEL-SASISVGQTYTLEIETKRRKGVEKNHTATHLLHAALHNIIGEHATQAGSLNE 118

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D LRFD TH + +T+ EL+ IE+ VN+ I   +PVVT   + + A   GA AL G KY 
Sbjct: 119 QDFLRFDFTHFEAVTAEELRRIEEEVNEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYG 178

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             VRVV++     G +S  LCGGTHV +T EI +  I+ E  I +G RRI A+TG+ A  
Sbjct: 179 KEVRVVTI-----GDYSVELCGGTHVGNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFL 233

Query: 734 HLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHK 790
               Q++ LK +A+ +K  Q   V  +VE + ++ R LQ  +A  K +            
Sbjct: 234 AYRDQEDALKEVAATIKSPQIKEVPNKVESLAQQVRDLQKENAALKEKAAAAAAGDVFKN 293

Query: 791 IADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
           + D N + +I S+V   D+  L++  D  ++K  S +++LV    +K   ++   + D  
Sbjct: 294 VKDANGIRYIASQVQVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKSSD-- 351

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              +A +L ++ A ++  G GGG+P MA +GG + +     +  VA  L
Sbjct: 352 --VHAGNLIKVLAPIVA-GRGGGKPDMAMAGGSDASAIQTLLNSVADNL 397


>gi|6176444|gb|AAF05594.1|AF188719_1 alanyl-tRNA synthetase [Giardia intestinalis]
          Length = 969

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 182/852 (21%), Positives = 319/852 (37%), Gaps = 164/852 (19%)

Query: 3   NVSSIRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQ 59
           ++  +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P   
Sbjct: 87  SMRRVWNSFAQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPAN 146

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+   +  
Sbjct: 147 PLIQPQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE-- 200

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                                    W +  G+  D++   T   + W+    G  GPC E
Sbjct: 201 -------------------------WLQTMGIDLDEV---TLIADVWAGG--GNLGPCVE 230

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            F                     +E+ N+VFM+F+         LP   +D G+GLER+ 
Sbjct: 231 YFM------------------HGLEVGNMVFMEFKAFADGTIEPLPVQVVDVGIGLERIP 272

Query: 235 TVLQEKTNNY-------------------------------------DIDLFKHLIQASE 257
            +L     +Y                                     +ID    + QA  
Sbjct: 273 WLLNRSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWA 332

Query: 258 ---QVTGMKYEG-----NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              + TG+  E        +    +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 333 LIKERTGLTTEDITNVIEPVRQMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 392

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ--------AKLLIEETLRSEDERFGKT 361
                 G+ + +    +  LC  +     +L +            +   L  E  R+  T
Sbjct: 393 HILVSRGWWDAIGG--IDGLCQIIDYHRQDLEEVHGAGSFPPFKPLRAVLELEYTRWTTT 450

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
                  ++ +L        L+ +    +  T GL  D + ++    G+      +    
Sbjct: 451 DKDARDKVEKLLK--KGKGHLSIEDWVTIVTTFGLNADQVSELT---GIPV--PENLYSH 503

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+ +               I  ++ + Y                   D     +   
Sbjct: 504 VAEQQEK-------------NAIKVAVAQLYD-----------TVSLPPTDCVYYTKPYG 539

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538
             L     + V +I    E      S  +  V+ D+T FY  +GGQ  DTG     +G+G
Sbjct: 540 EKLRKLADAKVVSIFANMED----KSKGRNLVILDKTVFYPTSGGQQHDTGVLKFLLGNG 595

Query: 539 IRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             +   + DV+K    +           +    S+ + ID   R QL  +H+A H++H  
Sbjct: 596 KMIIHDVVDVRKVGHCVMHELNAPVADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHAT 655

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            + +LG HV Q G+  T +    D+TH + +T  E ++IE   N +I  N+P+    + +
Sbjct: 656 ANKVLGPHVWQAGAKKTTEVATLDITHYRSLTFDEERAIEREANRMIRDNIPIRKYQLPK 715

Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
             A      +L   G      VR V +       H +  C GTH+ +TG+I L+ IV  +
Sbjct: 716 NKAEKKYGFSLYQGGVVPGSTVRCVDI-----TDHDTEACCGTHLDNTGKIGLIRIVKST 770

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I  G+ R+  + G+RA      Q E L +      V Q  +V   ++ +   ++L+ + 
Sbjct: 771 RISDGVVRLTFVAGERALDFTDTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLENLT 830

Query: 775 AKRKLQLNVEDL 786
            + + +L   +L
Sbjct: 831 VQLRGELLTSNL 842


>gi|308160664|gb|EFO63139.1| Alanyl-tRNA synthetase [Giardia lamblia P15]
          Length = 969

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 182/853 (21%), Positives = 324/853 (37%), Gaps = 164/853 (19%)

Query: 3   NVSSIRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQ 59
           ++  +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P   
Sbjct: 87  SMRRVWNSFTQSFTQTTPAHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPAN 146

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+   +  
Sbjct: 147 PLIQPQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSTKYVYFKEEIIRFNLE-- 200

Query: 115 TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
                                    W +  G+  D++   T   + W+    G  GPC E
Sbjct: 201 -------------------------WLQTMGIDLDEV---TLIADVWAGG--GNLGPCVE 230

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            F                     +E+ N+VFM+F+         LP   +D G+GLER+ 
Sbjct: 231 YFM------------------HGLEVGNMVFMEFKAFTDGTIEPLPVQVVDVGIGLERIP 272

Query: 235 TVLQEKTNNY-------------------------------------DIDLFKHLIQASE 257
            +L     +Y                                     +ID    + QA  
Sbjct: 273 WLLNRSVTSYITAFPTALKQMSQLIGITDDVINGDVWRRFGRYSCLLNIDEVSDISQAWA 332

Query: 258 ---QVTGMKYEG-----NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              + TG+  E        + +  +++DHLRS    I DG LP+N G G  LR ++RR  
Sbjct: 333 LIKERTGLTTEEIINVIEPVRHMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRRVF 392

Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ--------AKLLIEETLRSEDERFGKT 361
                 G+ + +    +  LC  +     +L +            +   L  E  R+  T
Sbjct: 393 HILVSRGWWDAIGG--IDGLCQIIDYHRQDLEEVHGSGSFPPFKPLRAVLELEYSRWTTT 450

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
                  ++ +L      E L+ +    +  T GL  D + ++    G+   D  +    
Sbjct: 451 DKDARDKVEKLLK--KGKEQLSIEDWVTIVTTFGLNADQVSELT---GIPVPD--NLYSH 503

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
           + EQ+ +               I  ++ + Y                   D     +   
Sbjct: 504 VAEQQEK-------------NAIKVAVAQLYD-----------TVSLPPTDCIYYTKPYG 539

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538
             L     + V +I+   E   +     +  V+ D+T FY  +GGQ  DTG     +G G
Sbjct: 540 EKLHKLAGAKVVSILTNMEDQSK----GRNLVILDKTVFYPTSGGQQHDTGVLKFILGRG 595

Query: 539 IRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
                 + DV+K    +           +    S+ + ID   R QL  +H+A H++H  
Sbjct: 596 KMFIHNVVDVRKVGHCVMHELDAPIADSIVQGTSVSMAIDSARRDQLMCHHTAAHVIHAT 655

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            + +LG HV Q G+  T +    D+TH + +T  E ++IE   N +I +N+P+    + +
Sbjct: 656 ANKVLGPHVWQAGAKKTTEAATLDITHYRSLTFNEERAIEREANRMIRENIPIRKYQLPK 715

Query: 657 EDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            +A      +L   G      VR V +   D     +  C GTH+ +TG+I L+ I+  +
Sbjct: 716 NEAEKRYGFSLYQGGVVPGSIVRCVDIANHD-----TEACCGTHLDNTGKIGLIRIIKST 770

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I  G+ R+  + G+RA      Q E L +      V Q  +V   ++ +   ++L+ + 
Sbjct: 771 RISDGVVRLTFVAGERALDFTDTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLEGMT 830

Query: 775 AKRKLQLNVEDLS 787
            + + +L   +L+
Sbjct: 831 VQLRGELLNSNLN 843


>gi|314981336|gb|EFT25430.1| DHHA1 domain protein [Propionibacterium acnes HL110PA3]
          Length = 473

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 141/500 (28%), Positives = 228/500 (45%), Gaps = 37/500 (7%)

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   +GL  +D   F   + EQR+RA+A S       T++  +S     G T F+GY  L
Sbjct: 1   MAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFLGYTDL 59

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                +                         I+  G  V  A  G  VEVV  +TPFYAE
Sbjct: 60  TVDTTV-----------------------TGIIANGASVSAAEPGAVVEVVLAETPFYAE 96

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
            GGQ  D+G    +GI  ++ DVQ+   G+ VH   ++ G L     +   ++   R   
Sbjct: 97  MGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPTTRFGA 155

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+ATH++H AL  ++G   +Q GS   P  LRFD + +K ++ +    IE+  N  I
Sbjct: 156 CQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEERCNVAI 215

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             +  V    M  EDA A GA A+ G KY   VRVV +     G  S  LCGGTHV+STG
Sbjct: 216 HDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVVEL----AGPWSRELCGGTHVASTG 271

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            I +L ++ E S+ +G RR+EA+    A  H+  +   +  L   LKV    +  RV ++
Sbjct: 272 RIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLADRVSKL 331

Query: 764 WEEYRKLQLIHAK---RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQK 818
             + ++ +        R+L   V+D+          + ++  +  V   +L+++   ++ 
Sbjct: 332 ATDLKEAERKLGAARTRELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTLATEIRA 391

Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876
           +++    ++ L+G + +K A ++            A  L ++    + GG GGG+  MAQ
Sbjct: 392 RVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGGKDDMAQ 450

Query: 877 SGGPNGNKADQAIAGVASFL 896
             G +    D A+  V + L
Sbjct: 451 GAGSDPTGIDAALRAVNTEL 470


>gi|301107111|ref|XP_002902638.1| alanyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262098512|gb|EEY56564.1| alanyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 332

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 155/319 (48%), Positives = 212/319 (66%), Gaps = 22/319 (6%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEK----PVYQA 60
            +R+ FL+FF+  GH ++PS+SL+P   D +L+F N+GMVPFK  F G +       Y  
Sbjct: 26  ELRSRFLQFFESQGHRIVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGAKARGYSR 85

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFK++AI + W  LT+E +L
Sbjct: 86  ATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKKQAITMCWRFLTQELEL 145

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
              RL++TV   D+EA +LWK+I+GL   KI  +  +DNFW+M ++GPCGPCSE+F+D G
Sbjct: 146 PIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCSEVFWDLG 205

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN-KQERFILPKMSIDTGMGLERMATVLQE 239
           + I       ++  ER++E+WNLVFMQF +     E   LP  S+DTGMGLER+A+VLQ 
Sbjct: 206 DHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLERVASVLQG 258

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299
             +NY  D+F  L+      +            R++ DHLR++  L+ DG+ P+N GRGY
Sbjct: 259 VPSNYHTDVFVPLLTEVATRSK---------TLRIVSDHLRATYALLQDGVFPSNIGRGY 309

Query: 300 VLRRIMRRAMCYARLLGYT 318
           VLRRI+RRA+ +A+ LG  
Sbjct: 310 VLRRIIRRAIRHAQQLGVR 328


>gi|118576438|ref|YP_876181.1| alanyl-tRNA synthetase [Cenarchaeum symbiosum A]
 gi|205830019|sp|A0RX10|SYA_CENSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|118194959|gb|ABK77877.1| alanyl-tRNA synthetase [Cenarchaeum symbiosum A]
          Length = 894

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 184/913 (20%), Positives = 324/913 (35%), Gaps = 178/913 (19%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQE--KPVYQA 60
           + +    T  E+F KNGHE +P   ++      L FT + +V F+ +       +     
Sbjct: 70  DYAQAWRTIEEYFVKNGHESVPRYPVVCRWRDDLYFTIASIVDFQRVMGSSVVFEFPANP 129

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF---GGYFKERAIQLAWDLLTKE 117
           +   Q C+R      DL+NVG T RH + F M+G  +    GGY+K+  I L + LL ++
Sbjct: 130 LVVPQTCLR----FKDLENVGVTGRHFSSFCMIGQHAVPGNGGYWKDECIDLDYGLLVRQ 185

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
             + +  +   V+ ED                           W+   +   GP  E ++
Sbjct: 186 LGIPKEEV---VFVED--------------------------VWAGGGS--FGPSLE-YY 213

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237
            +G                 +E+ N VF +F Q        L +  ID G GLER A + 
Sbjct: 214 VRG-----------------LELGNAVFTEF-QGELGNHTTLDRRIIDMGAGLERFAWIT 255

Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR------------------------ 273
                 YD   F  ++    +  G   +   +  +                         
Sbjct: 256 TGTPTAYDC-CFGPVMGRLAESLGADQDSAELAAYYTRVAVNLGRCGDLNEARRRSAQEA 314

Query: 274 ------------------VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                             ++ DH+R+  F I+DG LP+N G GY LR ++RR        
Sbjct: 315 GISDSRMAGAIAPLGEAYMVADHIRTLIFAISDGALPSNVGGGYNLRMMLRRVAGAMERT 374

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
            +    +  L+      +   YPEL  A+  ++  L  E  R+G + +R   +   +   
Sbjct: 375 -FPGLDLDELVDLHIDYLMGTYPELDGARQDVKTILDIEASRYGDSKERMGKITAKITDR 433

Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435
                +   D    LY++ G+  + + +    + +                         
Sbjct: 434 GRAPGV---DELVTLYESDGITPEYLIEAGAIQEVPP----------------------- 467

Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495
                  + +  L E +             +     +     + PP              
Sbjct: 468 -------EFYSRLDELHAPPPKAAGPGPELAGLADTEMLFYGEDPP-------------- 506

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
               E     +      VV D+T FYA  GGQ  D G   G     ++TDV K   GI +
Sbjct: 507 ----EFEARVMHSSDGGVVLDRTSFYARGGGQEPDHGTIGG----FRVTDVSKH-GGIIL 557

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H   ++ G L    ++    D + R  ++ NH++TH+L+ +   +LGS V Q+ +    D
Sbjct: 558 HR--LDGGSLAEGSTVRCIRDEKRRAGITRNHTSTHILNASARGVLGSWVWQHSAFKEED 615

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYN 673
             R D+TH  P+++AE+K IE   N I+ ++  V      R +A       +   G    
Sbjct: 616 HARLDITHHSPLSAAEVKKIEAAANGIVKEDRGVSIGYHPRGEAEQKYGFRIYQGGVVPV 675

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             VR+V+++      +    CGGTHV STGE+ L+ I     I+ G+ R+E ++G  A  
Sbjct: 676 STVRIVTIKG-----YDDEACGGTHVKSTGEVGLIRITRTKRIQDGVVRLEFVSGDAAIE 730

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIHAKRKLQLNVEDLSCHKI 791
           H      + +   +          GR++E  +    +  ++I    +           ++
Sbjct: 731 HERTAAARAEGDRAA-----EEAKGRLQEERDAGRLKSREIIPGMLEEITGGGSAEGMEV 785

Query: 792 A-DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           A        + + +  +   +        +                 VL           
Sbjct: 786 ATGPGGRRCLAAGIHDEYFHTSFGKKLVAMDPACAYCAIFEAGPTVRVLAYAGSKSGAG- 844

Query: 851 NAVDLARLSAKVL 863
            A ++ R  + VL
Sbjct: 845 -ADEIVREVSAVL 856


>gi|118374997|ref|XP_001020686.1| alanyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|89302453|gb|EAS00441.1| alanyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 1049

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 170/890 (19%), Positives = 320/890 (35%), Gaps = 176/890 (19%)

Query: 16  QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNI-FTGQEKPVYQAVTTVQKCVRAGGKH 74
            +     +    ++      + F  +G+  F+    TG+ +P    +   Q CVR     
Sbjct: 189 ARKPCTAIKRYPVVARWRNDVDFVAAGIYCFQPYCMTGELQPPANPLIQPQFCVR----F 244

Query: 75  NDLDNVGRTNRHHTFFEMLGNFSF-------GGYFKERAIQLAWDLLTKEFDLDQRRLYI 127
           NDLDN+G T RH++ F M+G  SF         +F E  ++   + L     + +  +  
Sbjct: 245 NDLDNIGLTGRHYSGFIMIGIQSFCYPGTEDKTFFSEECVEFNLNWLIDGLKIPKDEI-- 302

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
                                      T  ++ WS    G  G C E F           
Sbjct: 303 ---------------------------TLIEDIWSGG--GNLGSCVEYFV---------- 323

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                   + +E+ N+VF  ++     +   L    ID G+G+ER+  ++     +Y  D
Sbjct: 324 --------KGLEVGNMVFTMYKYYPDGKLEDLEIKVIDVGIGMERIPWLINGTPTSYM-D 374

Query: 248 LFKHLIQASEQVTGMK------------------YEGNN--------------------- 268
           +F    +  ++   ++                   E ++                     
Sbjct: 375 VFDTSYKYLQEKLQVETSTEIWKQIGPYTCHLNADESDDMEKTWQMVASSIGKTVQECKQ 434

Query: 269 ----IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL--- 321
               + +  +++DH R++  LI DG LP+N G G  +R I+RR     +  G+ + L   
Sbjct: 435 AITPVKDLYIVLDHTRAALVLIQDGALPSNTGGGSNIRNIIRRVFAIMKKNGWWDKLGKT 494

Query: 322 -------MMHLLPALCTEMGSAY---PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
                   + L      ++   Y   PE           +  E E++  T          
Sbjct: 495 KEEQMKNFLTLFDMHQQDLEKLYGKFPEYK----SFGSIIEIEYEKWSSTDKAQQK---K 547

Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431
           ++    K + L  +      ++ GL  D + ++    GL   D  +    +E ++ +   
Sbjct: 548 IVDSFNKKKALTLNDWIVAIESWGLSPDTITEVT---GLPQPD--NLYNEMELRKMKL-- 600

Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491
                 +   E+I +        T  + Y+      F                     + 
Sbjct: 601 ------TKAPEQILYQTAN-IQETVHLFYEHQNKFDF--------------------EAK 633

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           +  I    + VE      +  V+ DQ+ FY  +GGQ  D G    DG +  + DV K  +
Sbjct: 634 IVEIFADYKNVE-----NRNIVILDQSCFYPTSGGQQNDIGVMTVDGQKYNVVDVIKVGK 688

Query: 552 GIFVHHAIVERGILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
            +                    +   +D   R+ L  +H++TH++  A   +LG HV QN
Sbjct: 689 CVLHILDRSLPNPDNSHYIGQKVHAVVDENRRKILRNHHTSTHIVFAACRQVLGPHVWQN 748

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+  T D    D+TH   +T  +   IE   N I+  +  +    +N+ +A       L 
Sbjct: 749 GAKKTVDMAHLDITHYASLTEEQEMEIEKIANTIVFSSKNINKEFVNKAEAEKEHGFRLY 808

Query: 669 --GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G    D +RVV++E  D        C GTH  +T E+ ++ I+  + I  GI R+  +
Sbjct: 809 QGGVVPGDTLRVVNIEGTD-----VEACCGTHCDNTSEVGIIRILKTNRISDGIIRLYFV 863

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNVE- 784
            G+R+   L  Q + L  L +  KV + ++V   ++   E  + ++   +  +  LN++ 
Sbjct: 864 AGERSLQKLSTQTKVLVDLQNIFKVKESDLVSTSLKFFTERNKFIERHKSATQKVLNLQM 923

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +L   K    N          +     + + ++ +  +G  ++     EK
Sbjct: 924 ELFLAKDKYKNIFVKSTESEATLYFSFMGNFIKAQKDAGKGIVFVGEGEK 973


>gi|227538395|ref|ZP_03968444.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241777|gb|EEI91792.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 291

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 124/272 (45%), Positives = 171/272 (62%), Gaps = 15/272 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+N   IR  FL FF+   H+++PS+ ++  NDPTLMFTN+GM  FK+ F G+ +P +  
Sbjct: 23  MTN-REIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKHSR 81

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +   Q+C+R  GKHNDL+ VG    HHT FEMLGN+SFG YFK+ AI+ AW+LLT+ + L
Sbjct: 82  IADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTEVYKL 141

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
           D+ RLY+T+++ D+        EA+  WK  S +S D+I+     DNFW M ETGPCGPC
Sbjct: 142 DKDRLYVTIFEGDDSEGLVKDTEAYDFWK--SWISEDRILLGNKKDNFWEMGETGPCGPC 199

Query: 173 SEIFFD-QGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           SEI +D + E      PG    + +  + IEIWNLVFMQF +        LP   +DTGM
Sbjct: 200 SEIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGM 259

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           G ER+   +Q K++NYD D+F+ +I    Q  
Sbjct: 260 GFERLVRAIQGKSSNYDTDVFQPMITFIAQKA 291


>gi|322693348|gb|EFY85211.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 616

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 162/630 (25%), Positives = 275/630 (43%), Gaps = 79/630 (12%)

Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLG 377
           PL   +         + +P+L++ +  I++ L  E++ F KTL RG    +     +   
Sbjct: 11  PLFAKIQEV------TGFPDLVKKQKDIKDVLDEEEQAFTKTLSRGERQFEKYSAQASAT 64

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
             + L+G   ++L DT+G P D+ + +   RGL+ ID       + + R +AR  S+ + 
Sbjct: 65  GSKKLSGANVWRLSDTYGFPEDLTKLMAEERGLS-ID----ENEVADARQKARQDSMVI- 118

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
                        K     F   ++ + +K  +  +              +++ V+ I  
Sbjct: 119 -------------KNSVQTFAKLNIHQLAKLKETLQLPPSDDESKFSKGNITARVQLIFT 165

Query: 498 QGEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEG 552
             E +E        +   ++ D+T FYAE GGQ+ DTG  I   D    ++ DVQ +  G
Sbjct: 166 GSEFLESTKGIPPNEPFGLLLDRTNFYAEQGGQVTDTGRIIIGVDVAEFKVLDVQ-QLGG 224

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             VH+  +E G L+    +V   D   R+ +  NH+ TH+L+H++  +LG  + Q+GS +
Sbjct: 225 YIVHNGYLEYGELKAGDEVVSEYDELRRQLIRNNHTGTHILNHSIREVLGD-IDQHGSLV 283

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671
             D LRFD +H   IT ++LK IED  N  I ++  V  +++  E A+  +G  A+ G K
Sbjct: 284 DQDRLRFDFSHKATITISDLKVIEDMSNAYIRRDCKVYAKVVELELALRINGIRAVFGEK 343

Query: 672 YNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           Y + VRVVSV           E       S  LCGGTHV+ TG I  + IV E+ I +GI
Sbjct: 344 YINPVRVVSVGIDVDKILEKPENPQWRNFSIELCGGTHVAKTGSIKEMVIVEENGIASGI 403

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFL-------------------------KVSQGN 755
           RR+ A TG  A +      E  K +                             KV+   
Sbjct: 404 RRVVAYTGNAAYAAQRDAAEFAKRIDEIDALPFGAEKEAAVKAAARDRENLIISKVTAEG 463

Query: 756 VVGR----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELK 810
           +  +    V+ + +E +K Q   +K          +  +  DV  F+ ++    ++K + 
Sbjct: 464 LEAKFTKVVKSVTDEQKKRQKAESKAAFDAVTGHFAKVENKDVKFFIGYLPISANAKVIF 523

Query: 811 SVMDALQ-KKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGG 868
            V++  +  + +  + +  G + E      + V +DL      A   A   +KV+GG  G
Sbjct: 524 DVINHYKTNEKEKSVYLFGGSTAEGAVVHGVYVAKDLALKGVTAEAWAAAVSKVVGGKSG 583

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G  P   Q  G N  K D A+    ++L++
Sbjct: 584 GKEPTR-QGRGTNAEKIDDAVEAARNWLEQ 612


>gi|253741622|gb|EES98488.1| Alanyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 969

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 179/867 (20%), Positives = 313/867 (36%), Gaps = 168/867 (19%)

Query: 3   NVSSIRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQ 59
           ++  +  +F + F +    H ++P   ++        FT +G+  ++    TG+ +P   
Sbjct: 87  SMRRVWDSFTQSFTRTIPPHTIVPRYPVVARWRDDCEFTAAGIQCYQPFCVTGEIEPPAN 146

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLL 114
            +   Q C+R     NDLD++G + RH++ F MLG   F       YFKE  I+   + L
Sbjct: 147 PLIQPQLCLR----FNDLDSIGLSGRHYSGFTMLGIQVFNTSAKYVYFKEEIIRFNLEWL 202

Query: 115 -TKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
            T   DLD+  L   V                               W+    G  GPC 
Sbjct: 203 QTMNIDLDEVTLIADV-------------------------------WAGG--GNLGPCV 229

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           E F                     +E+ N+VFM+F+         LP   +D G+GLER+
Sbjct: 230 EYFM------------------HGLEVGNMVFMEFKAFANGTIEPLPVQVVDVGIGLERI 271

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--------------------------- 266
             +L     +Y I  F   ++   Q+ G+  E                            
Sbjct: 272 PWLLNRSVTSY-ITAFPTALKHMSQLIGITTETITGDVWRRFGRYSCLLNIDEVSDISQV 330

Query: 267 -------------------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
                                +    +++DHLRS    I DG LP+N G G  LR ++RR
Sbjct: 331 WSLIKERTGLTTEEITNVIEPVRCMYIVLDHLRSLMVAIQDGALPSNVGGGNNLRNVLRR 390

Query: 308 AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ--------AKLLIEETLRSEDERFG 359
                   G+ + +    +  LC  +     +L +            +   L  E  R+ 
Sbjct: 391 VFHILTNRGWWDAIGG--VDGLCQIIDCHRQDLEEVHGAGSFPPFKPLRAVLELEYSRWT 448

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
            T       ++ ++        L+ D    +  T GL  D + ++    G+   D  +  
Sbjct: 449 TTDKDARDKVEKLMK--KGKGQLSIDDWVTIVTTFGLNADQVSELT---GIPVPD--NLY 501

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             + EQ+ +                                 L         D     + 
Sbjct: 502 SRVAEQQEKNAIKVAAA------------------------QLYDTVSLPPTDCVYYTKP 537

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---- 535
               L     + V       E   E   G+ + V+ D+T FY  +GGQ  DTG       
Sbjct: 538 YGEKLCKLADAKVVGTFINME---EKSKGRNL-VILDKTVFYPTSGGQQHDTGVLRFILD 593

Query: 536 -GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
            G  I   + DV++    +          ++     + + ID   R QL  +H+A H++H
Sbjct: 594 NGKMITHDVVDVKRVGHCVVHELDTPINDLITLGTCVSMEIDSARRHQLMCHHTAAHVIH 653

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
              + +LG HV Q G+  T +    D+TH + +T  E ++IE   N +I  N+P+    +
Sbjct: 654 ATANKVLGPHVWQAGAKKTTEVATLDITHYRSLTFEEERAIEREANRMIRDNVPIRKHQL 713

Query: 655 NREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            + +A      +L   G      VR V +   D     +  C GTH+ +TG+I ++ I+ 
Sbjct: 714 PKNEAEKKYGFSLYQGGVVPGSTVRCVDIVGHD-----TEACCGTHLDNTGKIGMIRIIK 768

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
            + I  G+ R+  + G++A      Q E L +      V Q  +V   ++ +   ++L+ 
Sbjct: 769 STRISDGVVRLTFVAGEKALDFTDTQSEILHTQMDRWGVDQAGIVKTGDKFFTAMKRLEG 828

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSH 799
              + + +L   +L+         M+ 
Sbjct: 829 TTMQLRNELLNSNLNYAATRISKLMTV 855


>gi|1136561|gb|AAA84420.1| AlaRS A [Caenorhabditis elegans]
          Length = 272

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 117/270 (43%), Positives = 165/270 (61%), Gaps = 16/270 (5%)

Query: 3   NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
             S +R+TF+ FF +K  H  + SSS+IP +DPTL+F N+GM  FK +F G   P     
Sbjct: 5   TASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLA 64

Query: 59  --QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             +     QKC+RAGGKHNDLD+VG+   HHT+FEMLGN+SFG YFK+  I  AW+LLT 
Sbjct: 65  KLKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
            + +   RLY++V+  DE        EA  +W+ + G+  ++I+     DNFW M + GP
Sbjct: 125 VYGIPAERLYVSVFGGDEANGVPADSEARDIWRSV-GVPDERILNFGMKDNFWEMGDVGP 183

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
           CGPCSEI +D+           + +    +EIWNLVF+QF ++       LP   ID G+
Sbjct: 184 CGPCSEIHYDRI-GNRDASHLVNADDPMVVEIWNLVFIQFNREEGGVLKPLPAKHIDCGL 242

Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           GLER+  V+Q+KT+NYD D+F+ + +A  Q
Sbjct: 243 GLERLIAVMQDKTSNYDTDIFQPIFEAIHQ 272


>gi|331694168|ref|YP_004330407.1| Alanine--tRNA ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326948857|gb|AEA22554.1| Alanine--tRNA ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 463

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/472 (30%), Positives = 234/472 (49%), Gaps = 51/472 (10%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            +  +IR  +L+  ++  H ++  + L+  +DPT +FT SGM P      G E P    +
Sbjct: 1   MDARAIRQAYLDLLREQRHAVIERAPLVLRDDPTTLFTGSGMQPLLPYLLGAEHPDGARL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ C+RA     D+D VG  NRH TFFEMLGN+S G Y K   I + W  L     LD
Sbjct: 61  ADVQPCLRAQ----DMDEVG-DNRHTTFFEMLGNWSLGDYSKAEQIPMVWYFLVDVVGLD 115

Query: 122 QRRLYITVY--------DEDEEAFKLWKKIS---GLSADKIIRITTN------------- 157
             R+Y+T +          D+E+  +W+++    G+S D+I   T               
Sbjct: 116 PERIYVTAFIGDSAHGIPRDDESADIWERLFRERGISFDRIDLDTEEYGNEVGNQGARIA 175

Query: 158 ----DNFW-------SMAETGPCGPCSEIFF----DQGECIPGGLPGSSEEGERYIEIWN 202
                N+W        M    P GP SEIF+     + +   G  P  + +G +++EI N
Sbjct: 176 FYGHKNWWSRFGGPDEMPVEDPGGPDSEIFYYFPQVEHDTAYGRYPHQNSDGGQFLEIGN 235

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
            V M + +        LPK ++D G GLER+A    +  + Y + L   +++  ++VTG 
Sbjct: 236 SVSMTYRRTETGV-VDLPKHNVDFGGGLERIAAAAIDSPDVYHVSLLWPMVEQLQKVTGK 294

Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322
            Y        RV+VDHLR + FL ADG+ P+N  +GYV+RR++RRAM +   LG T  + 
Sbjct: 295 SY-AEATTAMRVVVDHLRGAVFLAADGVRPSNSKQGYVMRRLLRRAMRFGLDLGLTAGVA 353

Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
             L+P + +     YPE+   +  I   +  E++ F +TL +GL ++  +         +
Sbjct: 354 AELVPVVASVYSDVYPEIAAGEADIVAVIAKEEKLFARTLRKGLSMVRRL---GRTQPAI 410

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGID--IISFNQALEEQRSRARAH 432
           +G   F+L+DT G+P+++  +    +G+A  +     F+  ++ Q++R+RA 
Sbjct: 411 SGAHLFELHDTFGMPIELSVEEAHRQGIALEETWQADFDALMDAQKARSRAA 462


>gi|237708798|ref|ZP_04539279.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
 gi|229457224|gb|EEO62945.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Bacteroides sp.
           9_1_42FAA]
          Length = 465

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 144/479 (30%), Positives = 233/479 (48%), Gaps = 50/479 (10%)

Query: 425 QRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483
           QR  A        +   E   W ++KE  G T F+GYD       +   R++  +   + 
Sbjct: 26  QRRNAETKERARNAAAVETGDWITIKE--GDTHFVGYDFTEYETSILRYRQIKQKNQTL- 82

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
                                       ++V   TPFYAE+GGQ+GDTG  + +   ++I
Sbjct: 83  ---------------------------YQIVLSDTPFYAESGGQVGDTGVIVSEFETIEI 115

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            D +K+   + +H  I ++     ++  +  +D + R   + NHS THLL  AL  +LG+
Sbjct: 116 IDTKKE-NNLPIH--ITKKLPEHLDVPTMACVDTEKRAACAANHSCTHLLDEALRQVLGT 172

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIAS 662
           HV Q GS +TP+ LRFD +H + +T  +L+ +E  VN  I +N+P+     +  E A   
Sbjct: 173 HVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIRENIPLTEYRNLPIEKAKEL 232

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           GA AL G KY D VRVV          S   CGGTHVS+TG+I ++ I+SESS+ AG+RR
Sbjct: 233 GAIALFGEKYGDEVRVVQFGN------SIEFCGGTHVSATGKIGMVRIISESSVAAGVRR 286

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKL 779
           IEAITG +    +    + L  L +    +  ++   + +  +E   L+       K K 
Sbjct: 287 IEAITGVKVEELMDTVQDTLNDLKALFNNAP-DLKVAIRKYIDENAGLKKQVEEFMKEKG 345

Query: 780 QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                 L  +  +I  V  +  II  + +  +K +   L+ +I + + +++G     K  
Sbjct: 346 AALKARLVENAKEINGVKVVKAIIP-MSADVVKDIAFQLKGEIPANLFVVIGSVDNNKPM 404

Query: 838 VLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           + ++++EDL+    NA  L R +AK++ GG GGG+PH A +GG N +  + A+  V   
Sbjct: 405 LTVMISEDLVKAGQNAGKLVREAAKLIQGG-GGGQPHFATAGGKNPDGLNAAVDKVIEL 462


>gi|168700524|ref|ZP_02732801.1| alanyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 425

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 192/414 (46%), Gaps = 19/414 (4%)

Query: 496 VQQGEIVE--EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKA 550
           V   E+V      +G    ++ D+T FYAE GGQ+GDTG        G   ++ D Q+  
Sbjct: 4   VVDNEVVRTGALKAGDSAALLLDRTNFYAEQGGQVGDTGTIDRPGTAGAEFEVEDTQRLG 63

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           E   +H   +  G L+    + L      R  +  NH+ATHLL+ AL  +LG HV Q GS
Sbjct: 64  E-TVLHVGALLAGELKVGDRVTLQQTTTRRIDVMRNHTATHLLNLALREVLGHHVEQKGS 122

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLG 669
            +  +  RFD +H KP+T+ EL+ IE  VN  +  +  V  + M    A    G  A+ G
Sbjct: 123 LVDEEKTRFDFSHDKPVTAEELREIERRVNRQVVLDQVVTAQTMPLAQAKGLPGVRAVFG 182

Query: 670 TKYNDRVRVVSVEYEDGG----VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            KY D VRVV +  E         S   CGGTH+  TG I    IVS+  +  GIRRI A
Sbjct: 183 EKYPDPVRVVMIGAEAPEKVTQDMSVEFCGGTHLPRTGTIGYFKIVSQEGVAKGIRRITA 242

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE- 784
           +TG+ A   +  +   +  LA   +     +  RV  + E+ +  Q    K         
Sbjct: 243 VTGKPAYEDVQTRSAIVDELAGTFQCRPDELPTRVGALQEQLKAAQAQLKKAVAAALTGV 302

Query: 785 -DLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            D       DV      ++ +     ++ +++ +D +++K  S  ++       + A ++
Sbjct: 303 VDELIASAPDVGGSKVVVAKLPDGASNETVRTQIDRVKQKCGSAFVVFGWSEGPESAFLI 362

Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             +T DL+ +   A D+ +  A V+GGGGG G+P  AQ+GG    K  +A+   
Sbjct: 363 AALTPDLVKKGLKAGDVVKQVAPVIGGGGG-GKPEQAQAGGKEPAKLPEALQKA 415


>gi|3136021|emb|CAA19104.1| alanyl-tRNA synthetase [Mycobacterium leprae]
          Length = 272

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 129/279 (46%), Positives = 170/279 (60%), Gaps = 19/279 (6%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1   MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF--- 118
           T++QKC+R      D+D+VG T RH+TFF+M GNFSFG YFK  AI+LAW LLT  F   
Sbjct: 60  TSIQKCIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADG 115

Query: 119 --DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
              LD  RL+ TVY +D+EA  LW++I+GL  ++I R    DN+WSM   GPCGP SEI+
Sbjct: 116 GYGLDPERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIY 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMG 229
           +D+G    P G P  +E+  RY+E+WNLVFMQ E+     +        LP+ +IDTGMG
Sbjct: 176 YDRGPEFGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMG 233

Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268
           +ER+A VLQ   N Y+IDL + +I          Y+  N
Sbjct: 234 VERIALVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPEN 272


>gi|56807379|ref|ZP_00365361.1| COG0013: Alanyl-tRNA synthetase [Streptococcus pyogenes M49 591]
          Length = 369

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 197/397 (49%), Gaps = 37/397 (9%)

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446
            FKLYDT+G P+++ +++    G   ID   F  A++EQ+ RARA  +  GS   +    
Sbjct: 1   MFKLYDTYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGSMGMQN--- 56

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
                                  +    ++ +      T  + S +  I+   E  E   
Sbjct: 57  -----------------------ETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVS 93

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGI 564
            GQ   +VF QTPFYAE GGQ+ DTG    D      ++ DVQK   G  +H   V    
Sbjct: 94  EGQ-ALLVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVL-AS 151

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    +  L I+ + R  +  NH+ATHLLH AL  ++G H +Q GS    + LRFD TH 
Sbjct: 152 LSVGTNYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHF 211

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +++ EL+ IE  VN+ I   L + T   + E A   GA AL G KY   VRVV +   
Sbjct: 212 EAVSNEELRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI--- 268

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G +S  LCGGTH++++ EI L  IV E  I +G RRI A+TG++A      Q++ LK 
Sbjct: 269 --GNYSVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKE 326

Query: 745 LASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
           +A+ +K  Q  +   +V+ + +  R LQ  +A+ K +
Sbjct: 327 IAATVKAPQLKDAAAKVQALSDSLRDLQKENAELKEK 363


>gi|47210409|emb|CAF91677.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1194

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 134/486 (27%), Positives = 203/486 (41%), Gaps = 79/486 (16%)

Query: 297 RGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           R YVLRRI+RRA+ Y+   LG        L+  +   +G A+PEL +   ++++ +  E+
Sbjct: 409 RSYVLRRILRRAVRYSHEKLGAQRGFFATLVDVVVDSLGDAFPELRKDPEMVKDVINEEE 468

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F KTL RG  +LD  +S LG  + + GD A+ LYDT+G PLD+   I   +GL+ +D+
Sbjct: 469 VQFLKTLSRGRRILDRKISSLGPSKTVPGDTAWLLYDTYGFPLDLTALIAEEKGLS-VDL 527

Query: 416 ISFNQALEEQR---SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
            +F +  +  +     A   S G   G  + I   +            + LR  K    D
Sbjct: 528 AAFEEERKAAQVGPLAAPLRSQGKAGGDEDHIMLDI---------YAIEDLRNRKLAVTD 578

Query: 473 RKVLCQKPPID----LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
                +    +    +    S+ V A+ +      E                   +GGQ 
Sbjct: 579 DSPKYRYASDEGGKYVFEPASATVLALRRDRAFCAEV-----------------TSGGQS 621

Query: 529 GDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
            D G  +      GD +   + + Q    G +V H     G LR    + L +D   RR 
Sbjct: 622 FDEGFMVREDDSTGDRMEFTVKNTQ--VRGGYVLHVGTVYGTLRVGDQVTLHVDEARRRL 679

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATH+L+ AL  +LG    Q GS + PD LRFD T    +++ E++  E+    +
Sbjct: 680 IMSNHTATHILNFALRGVLGE-ADQRGSLVAPDRLRFDFTAKGALSTGEVRRTEEIACAL 738

Query: 643 IAQN-----------------------LPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678
           I +                          V         A A  G  A+    Y D VRV
Sbjct: 739 IKEAKVRGAGGLGAWLLAFALSRALSPQTVYALEAPLAQAKAIQGLRAVFDETYPDPVRV 798

Query: 679 VSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           VS+               G + S   CGGTH+ ++       IVSE +I  GIRRI A+T
Sbjct: 799 VSIGVPVEELLKDPDSTAGALTSIEFCGGTHLQNSAHAAPFIIVSEEAIAKGIRRIVAVT 858

Query: 728 GQRARS 733
           G  A  
Sbjct: 859 GAEAHK 864



 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/305 (37%), Positives = 168/305 (55%), Gaps = 45/305 (14%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             + IR  F++FF+++ H  + SS+ +P +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TAAQIRQKFIDFFRRHEHVYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPAHPMA- 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF-------------------- 102
            +++      KHNDLD+VG+   HHTFFEMLG++SFG YF                    
Sbjct: 65  KLRRAANTQKKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKVAGRAPGPGLARPPLYPAD 124

Query: 103 -------------KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWK 141
                        +  A Q+A +LLT+EF +   RLY+T +  DEEA         ++W 
Sbjct: 125 GDALLRSSAPPPLQHLACQMALELLTQEFGIAIERLYVTYFGGDEEAGLEPDLECKQIWL 184

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
            + G+   +I+  +  DNFW M +TGPCGPCSE+ +D+           + +    +E+W
Sbjct: 185 DL-GMDEARILPGSMKDNFWEMGDTGPCGPCSEMHYDRIGG-RDAAHLVNMDDPNVLEVW 242

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           NLVF+QF ++++     LPK SIDTGMGLER+ +VLQ+K +NYD DLF    QA ++V G
Sbjct: 243 NLVFIQFNRESETVLKPLPKKSIDTGMGLERLVSVLQDKMSNYDTDLFLPYFQAIQKV-G 301

Query: 262 MKYEG 266
           +  E 
Sbjct: 302 LSPED 306



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 806  SKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863
            S+ L   +  L+ +      ML  +  E  K + L  V ++   R   A +  +    +L
Sbjct: 1097 SQALNESLKLLKAQSPQTAAMLFTVDPEAGKVTCLCQVPQETASRGLKASEWVQDLCPLL 1156

Query: 864  GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              G GGG+   AQ+ G N ++  +A+     F +
Sbjct: 1157 -DGKGGGKDLSAQATGKNTHRLQEALQAARQFAR 1189


>gi|295839856|ref|ZP_06826789.1| alanine-tRNA ligase [Streptomyces sp. SPB74]
 gi|295827681|gb|EDY45628.2| alanine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 399

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 216/417 (51%), Gaps = 37/417 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           N   I   F  F+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +
Sbjct: 6   NTEEISRRFTGFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRL 65

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D
Sbjct: 66  VNVQRCLRT----TDLEEVG-DPTHLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGID 120

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TV+  D+       + ++W+++ G+  ++ +     DN+WS   TGPCGP SEI
Sbjct: 121 PGLLHTTVFGGDDRVGPDLASLEVWERL-GVPVERSV----EDNWWSNGPTGPCGPDSEI 175

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P   P   E   R++E+WN V M+  +        LP+ ++DTG+GLER+A+
Sbjct: 176 FLWTGDGPPESTPTGDE---RWVEVWNHVMMRHRRLPDGSLVPLPQRNVDTGLGLERLAS 232

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ + + +D D+F    +    + G+        + R++ DH+RS+  +I DG+ PA  
Sbjct: 233 LLQGERSVFDGDVFAPWRRLLPPLWGL-----GETSLRLVSDHVRSAVVVIGDGVRPAAT 287

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
           GRGYVLRR++RRA+     L  T+P      L   L T   + + +  +    +   LR+
Sbjct: 288 GRGYVLRRLVRRALTT---LWRTDPSYGFGELPRELVTGTLAHFGQGEEDPETVRRVLRT 344

Query: 354 ---EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              E+ RF   LDRG      VL+       L  D    L+DTHGLP D++Q +   
Sbjct: 345 LGDEEARFRSLLDRGR----RVLAAPRYRGPLTEDDLHYLHDTHGLPRDLVQSLREE 397


>gi|329737456|gb|EGG73710.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 265

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 117/267 (43%), Positives = 159/267 (59%), Gaps = 13/267 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR  +L+FF + GH + PS+ L+P +D +L++ NSG+   K  F G+E P    +
Sbjct: 4   MKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRI 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
              QK +R     ND++NVG T RHHTFFEMLGNFS G YFK  AI+ AW+ LT  K   
Sbjct: 64  VNSQKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMG 119

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           ++  +LY+T++ ED EAF++W +  GL   +IIRI    NFW + E GP GP +EIF+D+
Sbjct: 120 MEPEKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDR 176

Query: 180 GECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           G       P        E ERY+E+WNLVF +F          LP  +IDTGMGLERM +
Sbjct: 177 GSAYGKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTS 236

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM 262
           + Q    NY+ DLF  +I+  E V+G 
Sbjct: 237 ISQNVRTNYETDLFMPIIKEVEHVSGK 263


>gi|297519240|ref|ZP_06937626.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 316

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 137/353 (38%), Positives = 199/353 (56%), Gaps = 37/353 (10%)

Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403
           +  +E+ L++E+E+F +TL+RGL LLD  L+ L  D  L+G+ AF+LYDT+G P+D+  D
Sbjct: 1   QAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTAD 59

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   R +  +D   F  A+EEQR RAR  S G G+     I         A++F GYD L
Sbjct: 60  VCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHL 112

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
                                   ++  V A+   G+ V+   +GQ+  VV DQTPFYAE
Sbjct: 113 E-----------------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAE 149

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +GGQ+GD G   G      + D QK  + I  H   +  G L+   ++   +D   R ++
Sbjct: 150 SGGQVGDKGELKGANFSFAVEDTQKYGQAI-GHIGKLAAGSLKVGDAVQADVDEARRARI 208

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            +NHSATHL+H AL  +LG+HVSQ GS +    LRFD +H++ +   E++++ED VN  I
Sbjct: 209 RLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQI 268

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
            +NLP+ T IM+ E A A GA AL G KY++RVRV+S+     G  S+ LCGG
Sbjct: 269 RRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGG 316


>gi|255521189|ref|ZP_05388426.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
          Length = 319

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 178/323 (55%), Gaps = 13/323 (4%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   NH+ATHLLH AL   LG HV+Q GS ++PD LRFD +H   IT  EL  +E+ VN+
Sbjct: 1   ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 60

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            I + + VV   M   +A   GA AL G KY D VRVV V     G +S  LCGG HV +
Sbjct: 61  KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 115

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T +I L  IVSE+ I AG RRIEA+TG+ A   +  Q+  LK  AS LK +      +VE
Sbjct: 116 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 175

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDAL 816
           ++  + R+++  +     +L     +       +I  V  ++  ++  D  +L+  +D  
Sbjct: 176 QLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNW 235

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMA 875
           + K   GI++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGGRP MA
Sbjct: 236 KDKKIGGILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 293

Query: 876 QSGGPNGNKADQAIAGVASFLKK 898
           Q+GG N  +   A+  V++++K+
Sbjct: 294 QAGGKNPAELGTALDYVSTWVKE 316


>gi|14041674|emb|CAC38773.1| alanyl-t-RNA synthetase [Rhizobium tropici]
          Length = 232

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 157/229 (68%), Positives = 190/229 (82%), Gaps = 1/229 (0%)

Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           F LD +RL +TVY  D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+
Sbjct: 2   FGLDAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIATSDNFWAMGDTGPCGPCSEIFY 61

Query: 178 DQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
           D G+ I GG PGS E +G+R+IEIWNLVFMQFEQ  K++R  LP+ SIDTGMGLER+A V
Sbjct: 62  DHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKEQRVDLPRPSIDTGMGLERVAAV 121

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296
           LQ K +NYDIDLF+ LI+ASE+ TG+K EG +  +HRVI DHLRSS+FLIADG+LP+NEG
Sbjct: 122 LQGKHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNEG 181

Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345
           RGYVLRRIMRRAM +A+LLG  EPLM  LLPAL  +MG AYPEL++A+ 
Sbjct: 182 RGYVLRRIMRRAMRHAQLLGAKEPLMWKLLPALIQQMGRAYPELVRAEA 230


>gi|281208014|gb|EFA82192.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 804

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 138/250 (55%), Positives = 174/250 (69%), Gaps = 12/250 (4%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            ++ SIR TFL +F++N H  + SSSL+P  D +L+FTNSGMV FKN F G EKPV    
Sbjct: 50  KSIDSIRKTFLSYFERNDHLRVESSSLVPHTDYSLLFTNSGMVQFKNCFIGFEKPVKPLC 109

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFD 119
           T+VQ+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY  FK  AI+ AW LLT +F 
Sbjct: 110 TSVQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYSHFKRDAIRHAWTLLTVDFK 169

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG-PCGPCSEIFFD 178
           L   RL +TV   DEE+  +W+   GL +++I+     DNFWSM +   PCGPCSEIF+D
Sbjct: 170 LPVDRLLVTVLHGDEESASIWRDDIGLPSERILYKGEADNFWSMGDGDGPCGPCSEIFWD 229

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238
           QG  +         +G+RY+EIWNLVFMQ+ +   ++   L    +DTGMGLERMATVLQ
Sbjct: 230 QGHEV---------DGDRYLEIWNLVFMQYHRDASRKLIPLATPCVDTGMGLERMATVLQ 280

Query: 239 EKTNNYDIDL 248
             ++NY+ID 
Sbjct: 281 GVSSNYEIDF 290



 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 247/566 (43%), Gaps = 68/566 (12%)

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           L +   +++    + +  F   ++RG   LD ++     DE       F +++T+GLPL+
Sbjct: 272 LERMATVLQGVSSNYEIDFA--IERGAPHLDDLIESRKLDEW----QVFNIFNTYGLPLE 325

Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459
            + ++   +    + +      +EE + ++++      +   E +    K      +FIG
Sbjct: 326 -ISEVKAKQANIELSMEKVQTYIEEMKEKSKSTWKKDKNNIPEPV-LKWKNDRIEPEFIG 383

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
           Y           D K   +           S+                     +  D+ P
Sbjct: 384 Y----------TDTKSKSKVLKSYFNPEQDSV-------------------AYLSLDKCP 414

Query: 520 FYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGI---------LRTEM 569
           FY  +GGQ+GDTG  IG  G   ++ D  K  E   V    ++  I         L+ + 
Sbjct: 415 FYGNSGGQIGDTGKIIGKSGNTYRVIDCIKPYENGLVILLEIDPKIHRYNDLSIDLKEDS 474

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCITPDGLRFDVTHS 624
            +   +D+  R+Q +I+H+ATHLL  AL  +       S V Q GS + PD LRFD T+ 
Sbjct: 475 FVDSVVDHNIRQQTAIHHTATHLLQAALRAVLKSNQSSSSVVQAGSYVGPDALRFDFTYP 534

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             +T  E++ +E  +N II ++  V T      +A  S A  L   KY D VRVV V   
Sbjct: 535 AKLTREEIQQVEHWINHIIEKDAIVETVETPYAEACKSDAIQLFSEKYRDVVRVVDVPG- 593

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                S  LCGGTHV  T E+    I+SE+S+ AG RRIEAI G  A   L    + L S
Sbjct: 594 ----FSKELCGGTHVKRTSELQCFKIISENSVAAGTRRIEAIAGPVAIKWLSNNSDILSS 649

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIIS 802
           ++  L+V    V  +++++    ++ +   A   ++L +  +   K        + H+I 
Sbjct: 650 ISRRLEVQTPAVEKQIDQLLTNRKEQERQIADLTMKLALASIKSAKGSFDGKPIIIHLID 709

Query: 803 ---EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
               VD K L+ + +++ K+    + +++ +  + K  V +   +      +A  + +  
Sbjct: 710 CDVSVDKKGLQEIGNSMSKRDTDSVHVIITL--DGKILVTLGSAKLDT---SADKVIKTL 764

Query: 860 AKVLGGGGGGGRPHMAQSG-GPNGNK 884
            +V+G G GGG   MAQ+  G N +K
Sbjct: 765 FQVIGAGKGGGSKQMAQASIGNNIDK 790


>gi|17862882|gb|AAL39918.1| SD01519p [Drosophila melanogaster]
          Length = 540

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 134/547 (24%), Positives = 231/547 (42%), Gaps = 64/547 (11%)

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +   + L  ID+  +  A    +  +   S G G+   E+I   +   +  +Q     + 
Sbjct: 1   MAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQGVP 52

Query: 464 RGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
             +   K     V  ++         +S + A+  + + V E  SGQK  +V D+T FYA
Sbjct: 53  PTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNFYA 112

Query: 523 EAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           E+GGQ+ D G  +   D     + D      G  +H  +VE G L+    L L ID + R
Sbjct: 113 ESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVERR 171

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                NHSATH L+H L  +LG    Q GS + P+ LRFD      +T  ++   E    
Sbjct: 172 WLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQLTK 231

Query: 641 DIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VEYEDGGV 688
           +++ +N+P+  +      A    G  ++    Y D VRV+S            + E G  
Sbjct: 232 EMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSEAGEQ 291

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            S   CGGTH+  +G IM   I SE +I  GIRRI A+TG  A   L   +   + +   
Sbjct: 292 TSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIVR- 350

Query: 749 LKVSQGN---------VVGRVEEIWEEY--------RKLQLIHAKRKLQLNVEDLSCHKI 791
           LK +  N          V  + E+ E+         +K ++ +  + L+  ++D      
Sbjct: 351 LKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALR 410

Query: 792 ADVNFM---------------SHIISEVDS----KELKSVMDALQKKIQSGIIMLVGISK 832
           A V+                 + ++ ++++    K L + +  ++ ++     M + +  
Sbjct: 411 AAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDA 470

Query: 833 E-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
           + KK   L  V +  +++   A +  +  +  L GG GGG+P  AQ+ G N  K D+ + 
Sbjct: 471 DSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQ 529

Query: 891 GVASFLK 897
             + F +
Sbjct: 530 LASKFAQ 536


>gi|284030737|ref|YP_003380668.1| Alanine--tRNA ligase [Kribbella flavida DSM 17836]
 gi|283810030|gb|ADB31869.1| Alanine--tRNA ligase [Kribbella flavida DSM 17836]
          Length = 387

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 140/406 (34%), Positives = 219/406 (53%), Gaps = 34/406 (8%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
            TF++FF ++GH     SSLIP     ++FT SGM P      G+  P+ + +  VQ+C+
Sbjct: 5   KTFVDFFTRHGHVPTTGSSLIPRPGDPVLFTTSGMHPLTPYLEGEPHPLGRRLVGVQRCL 64

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYIT 128
           R      DLD VG    H T FEMLG++S G Y  E+ ++  + LLT+ F +D  +LY+T
Sbjct: 65  RT----TDLDEVG-DPTHLTVFEMLGSWSLGDYGSEQTLRWGYQLLTERFGIDPGQLYVT 119

Query: 129 VYDED------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           V+  D      +E+ + W+ + GL     I +TT+DN+WS   TGPCGP SEIF   G  
Sbjct: 120 VFGGDGQVELDQESLRTWQSL-GLP----IELTTDDNWWSNGPTGPCGPDSEIFVWTGGG 174

Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242
            P G P +    +R++E+WN V M++ + +      L + +IDTG+GLER+  VL+ K +
Sbjct: 175 SPEGTPTT---DKRWVEVWNHVMMRYRRLDDGSLEPLRQRNIDTGLGLERLTMVLEGKQS 231

Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
            Y+  LF+  +    ++  +     +  + R+++DHLRSS  ++ DG+ P+N GRGYVLR
Sbjct: 232 VYETSLFEPWMTTVPRLWTL-----DEQSERIVIDHLRSSIVIVGDGVHPSNTGRGYVLR 286

Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK--LLIEETLRSEDERFGK 360
           R++RRA+     + + E     L                Q +   L+   L  E+ RF  
Sbjct: 287 RLIRRAL----TILWREDESRSLSELPIELFQQTLDHFHQGELVTLVRRILIDEEIRFTN 342

Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
            L+RG      VLSH    + L+ +    L++THGLP +++  +L 
Sbjct: 343 LLERGRK----VLSHDRFRKTLDQNDFDYLHETHGLPQELVVSLLE 384


>gi|325973162|ref|YP_004250226.1| alanyl-tRNA synthetase [Mycoplasma suis str. Illinois]
 gi|323651764|gb|ADX97846.1| alanyl-tRNA synthetase [Mycoplasma suis str. Illinois]
          Length = 445

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 141/452 (31%), Positives = 240/452 (53%), Gaps = 26/452 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + ++ T++ +F  NGHE++P  SLIP   D + +F N+G+   K +F        Q  
Sbjct: 5   SPAKLKETWINYFSSNGHEVIPPHSLIPPEYDKSTLFVNAGLGAIKKLFIESSDKP-QMF 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QK VR      D+ ++   + H T+FEM+GNFS GGYFK  AI  A + L     +D
Sbjct: 64  TSIQKVVRTV----DITSIEEDSWHSTYFEMMGNFSIGGYFKREAIGYAVEFLLSLLKID 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL IT+Y++D E+  +WK++ G +   I+++    NFW + E GPCGPC+EI++D+GE
Sbjct: 120 KNRLVITIYEKDSESESIWKELLGENT-PILKLG-KANFWEIGE-GPCGPCTEIYYDRGE 176

Query: 182 CIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  G          +RYIEIWN+VF QF  +N  E   L + +IDTG GLER+ T+
Sbjct: 177 KYDKNNLGVELIKQGINNDRYIEIWNIVFSQFWAKN-GEYEELKRKNIDTGAGLERVITI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           ++E  N +    F  LI+  E+++G  Y     +     + ++I DH+R+ + ++ +GIL
Sbjct: 236 IEEAENIFHSSCFSPLIKEVEKLSGKSYYLASEDSPLKAHFQIISDHIRTLTLIVGEGIL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPL--MMHLLPALCTEMGSAYPELIQAKLLIEE 349
           P+N+GRGYV+++++RR      +LG +  L  +  LL      +   +  L + +  I+E
Sbjct: 296 PSNKGRGYVVKKLLRRVATSLNILGVSNCLEALSSLLDISVELLSPLHSFLSEQQKNIKE 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            + +E + F K L+        +   +   E    +  F L +  G P  +++ IL  + 
Sbjct: 356 IVMAEYQSFEKVLN---NFYKKIFKEIENPENNLEERLFTLVEREGAPFALIEKILVEKE 412

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           +       FN+  E  +++++      G   T
Sbjct: 413 I-NFSREKFNELYENHKNKSKNAKFSSGFDLT 443


>gi|325989605|ref|YP_004249304.1| Alanyl-tRNA synthetase [Mycoplasma suis KI3806]
 gi|323574690|emb|CBZ40346.1| Alanyl-tRNA synthetase [Mycoplasma suis]
          Length = 445

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 141/452 (31%), Positives = 238/452 (52%), Gaps = 26/452 (5%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           + + ++ T++ +F  NGHE++P  SLIP   D + +F N+G+   K +F        Q  
Sbjct: 5   SPAKLKETWINYFSSNGHEVIPPHSLIPPEYDKSTLFVNAGLGAIKKLFIESSDKP-QMF 63

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
           T++QK VR      D+ ++   + H T+FEM+GNFS GGYFK  AI  A + L     +D
Sbjct: 64  TSIQKVVRTV----DITSIEEDSWHSTYFEMMGNFSIGGYFKREAISYAVEFLLSLLKID 119

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL IT+Y++D E+  +WK++ G +   I+++    NFW + E GPCGPC+EI++D+GE
Sbjct: 120 KSRLVITIYEKDSESESIWKELLGENT-PILKLG-KANFWEIGE-GPCGPCTEIYYDRGE 176

Query: 182 CIPGGLPGS-----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
                  G          +RYIEIWN+VF QF  +N  E   L + +IDTG GLER+ T+
Sbjct: 177 KYDKNNLGVELIKQGINNDRYIEIWNIVFSQFWAKN-GEYEELKRKNIDTGAGLERVITI 235

Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNIVNHRVIVDHLRSSSFLIADGIL 291
           ++E  N +    F  LI+  E+++G  Y     +     + ++I DH+R+ + ++ +GIL
Sbjct: 236 IEEAENIFHSSCFSPLIKEVEKLSGKSYYLASEDSPLKAHFQIISDHIRTLTLIVGEGIL 295

Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPL--MMHLLPALCTEMGSAYPELIQAKLLIEE 349
           P+N+GRGYV+++++RR      +LG    L  +  LL      +   +  L + K  I++
Sbjct: 296 PSNKGRGYVVKKLLRRVATSLNILGVPSCLEALSSLLNISVELLSPLHSFLSEQKENIKK 355

Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409
            +  E + F K L+        +   +   E    +  F L +  G P  +++ IL  + 
Sbjct: 356 VVLGEYQSFEKVLN---NFYKKIFKEIENPENNLEERLFTLVEREGAPFALIEKILVEKE 412

Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
           +       FN+  E  +++++      G   T
Sbjct: 413 I-NFSREKFNELYENHKNKSKNAKFSSGFDLT 443


>gi|147677396|ref|YP_001211611.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146273493|dbj|BAF59242.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 330

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/332 (36%), Positives = 193/332 (58%), Gaps = 13/332 (3%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D   R     NHSATHLLH AL  +LG HV+Q GS + P+ LRFD TH    T  E
Sbjct: 2   TARVDPARRAATCRNHSATHLLHKALKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPEE 61

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ +E+ VN ++   LPV     +  +A   GAAAL G KY +RVRVV +     G  S 
Sbjct: 62  LQKVEELVNRMVLSALPVEAFETSLAEARKMGAAALFGEKYGERVRVVKM-----GDFSL 116

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTH+ +T E+ L  ++ ESS+ AG+RRIEA+TG+ A S++  ++E+L  +A  +K 
Sbjct: 117 ELCGGTHLRNTAEVGLFKLLGESSVGAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVKA 176

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLS--CHKIADVNFMSHIISEVDS 806
           +    V RVE + +  R L+  +   + +L    V+DL     ++  V  ++   +  D 
Sbjct: 177 APHEAVRRVEGLLQTVRDLEAENEALQARLARYQVQDLMDRLREVKGVKVLAGQAAAPDM 236

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865
             L+ ++D L+ ++ SG+I+L G + E + +++  VT+DL+++  +A  L +  A V+GG
Sbjct: 237 DSLRGMVDLLRDRVGSGVIVL-GSAGENRVNLVAAVTKDLVEKGLHAGKLVKELAPVVGG 295

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG GRP MAQ+GG + ++  +A+      ++
Sbjct: 296 GGG-GRPEMAQAGGKDPSRLKEALEKTYKAVE 326


>gi|222636774|gb|EEE66906.1| hypothetical protein OsJ_23751 [Oryza sativa Japonica Group]
          Length = 1329

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 177/365 (48%), Gaps = 32/365 (8%)

Query: 15  FQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKH 74
           F+   H     S+++   D  L+F ++ M  F  +          A  +   C     K 
Sbjct: 12  FESKAHTRCSPSTILAVKDSPLLFADAEMNQFMPVLLDTA-----AQGSQLGCPGHACKS 66

Query: 75  NDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE 134
                V   +RH TF E+LGN+SFG YFKE AI  AW+LLTK ++L+  R+++T +  DE
Sbjct: 67  LRCIPVAVDDRHLTFTEVLGNWSFGDYFKEEAIGFAWELLTKVYELEVDRIFVTYFGGDE 126

Query: 135 --------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
                   E+  +W K   L +DK++ +    NF+   +TGPCGPCS+I+FDQ       
Sbjct: 127 KSGLAPDLESKHIWLKY--LPSDKVLPLVNKGNFYQNGDTGPCGPCSQIYFDQIGHH-DV 183

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
               + +    IEIWNLVF QF ++            + TG+  E++ ++LQ+K + +D 
Sbjct: 184 ASLLNNDDPGCIEIWNLVFFQFNKEAGGILMPSSAKHVGTGLNFEQLTSILQKKKSKFDT 243

Query: 247 DLFKHLIQASEQVTG---MKYEG--------NNIVNHRVIVDHLRSSSFLIADGILPANE 295
           D+    I +  Q TG     Y G           + +R++ DH+R+SSF IADG  P  E
Sbjct: 244 DILMPTIDSIRQCTGNEIQPYSGKFGPDDINEVDLAYRIVADHIRTSSFAIADGSQPGIE 303

Query: 296 GRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354
               + R ++RRA+ +    L   +  +  L+ A    M   +PEL+  +  I++ +  E
Sbjct: 304 ----IARNMLRRAIYFGHQNLKAKQRFLTILVSAFIESMSGDFPELLHNEKKIKDIIAEE 359

Query: 355 DERFG 359
           +  F 
Sbjct: 360 EITFA 364


>gi|259015927|gb|ACV89247.1| alanyl-tRNA synthetase [Tipula abdominalis]
          Length = 268

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/269 (39%), Positives = 149/269 (55%), Gaps = 23/269 (8%)

Query: 48  NIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
            IF G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YF
Sbjct: 1   PIFLGTADPNSDMAKWVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRI 154
           K      AW+LLT    L   RLY+T +        + D E  ++W ++ G+  + I+  
Sbjct: 61  KREICTWAWELLTDRLKLPSERLYVTYFGGDAASGLEPDLECRQIWLEL-GIKPEHILPG 119

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
           +  DNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF ++   
Sbjct: 120 SMKDNFWEMGETGPCGPCSELHFDRIGGGRSVPELVNQDDPDVLEIWNLVFIQFNREPDS 179

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------ 268
              +LPK  ID GMG ER+ +V+Q+K +NYD DLF  +  A ++ TG             
Sbjct: 180 SLRLLPKKHIDCGMGFERLVSVIQDKRSNYDTDLFVPIFDAIQKGTGAPPYQGRVGAEDA 239

Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPAN 294
               + +RV+ DH R+ +  ++DG  P N
Sbjct: 240 DGIDMAYRVLADHARTLTIALSDGGYPDN 268


>gi|51102334|gb|AAT95880.1| alanyl-tRNA synthetase [Trichomonas vaginalis]
          Length = 1003

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 169/914 (18%), Positives = 317/914 (34%), Gaps = 168/914 (18%)

Query: 9   TTFLEFFQKNG------HELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
             +L+F +         +  +    ++      + F  +G+  F+    TG+ +P    +
Sbjct: 88  QAWLDFKKSMETNTPVPYTAIKRYPVVCRWRSDVDFVAAGIYCFQPFCVTGESEPPANPL 147

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q C+R     NDLDN+G T RH++ F MLG   F                      D
Sbjct: 148 CACQFCLR----FNDLDNIGITGRHYSGFNMLGIQVFN-------------------HAD 184

Query: 122 QRRLYITVYDEDEEAF---KLWKKISGLSADKII----RITTNDNFWSMAETGPCGPCSE 174
           + R     + E EE F    L         + +     ++T  ++ W+    G CG C E
Sbjct: 185 RARKEPNQFGETEEIFWKDTLIANNYRWCTETLHLDPKKLTFIEDVWAGG--GNCGACVE 242

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            F+                    +EI N+VF ++    + E   +    +D G+GLER+ 
Sbjct: 243 YFY------------------GGLEIGNMVFTEYTVSPQGEFSPISTKVVDVGIGLERIP 284

Query: 235 TVLQEKTNNY----------------------------------DIDLFKHLIQASEQV- 259
            ++     +Y                                  D D  +H+ Q   +V 
Sbjct: 285 WLVNGGWTSYLDVFDYILPVLSQKLDVPIDTPEFRKFAPNTALFDADENQHIEQTWAKVG 344

Query: 260 --TGMKYEG--------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              G+   G            +   I DH R+  + I DG LP+N G    +R I+R   
Sbjct: 345 EEMGLDKAGLAKFRQHLRQFSDLVRICDHTRTVLYAIEDGALPSNNGGAANIRDILRIVF 404

Query: 310 CYARLLGYTEPLMMHL--LPALCTEMGSAYPELI------QAKLLIEETLRSEDERFGKT 361
              +   +    +  +  +  +     +    L            +E+ +R E  R+  +
Sbjct: 405 DIIKKHNW----LGKIGGVDGIIDVFKAHMKGLEGFFGPFSNTRCLEDVIRLEFTRWENS 460

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
               + LL   ++     E +          ++G+  D + +         +D  +    
Sbjct: 461 HANAIKLLKSFVNKWRGKE-IPVQEWITQMTSNGVSADEIIEAFQ------VDDPN---- 509

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
                               + ++  L+E    T   G +L + +     D + +   P 
Sbjct: 510 --------------SQLQKPDDLYIKLEEYKCRTAK-GIELEKYNVEGIPDTEEIYNYPE 554

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
            +     ++ +  ++   ++V            FD+T  Y   GGQ  D G         
Sbjct: 555 NEYKYEGTAKLIKLLAPNKLV------------FDRTILYPTQGGQEHDDGKIKIGDKLY 602

Query: 542 QITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           ++ +++K  +  IF     V+           + +D + R  +   HSATHL+  A   +
Sbjct: 603 EVQNIEKVRKVAIFTVDGDVDEKY--VNTECTMYVDPEVREIMRTQHSATHLVAAAARRV 660

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV QNG+  T      D+TH    T  ++  I+   N++I  N  V   +  R++A 
Sbjct: 661 LGPHVWQNGAKKTKVESHIDLTHYSLPTFEQVLEIQRVANELIMTNAAVKKCVYTRKEAE 720

Query: 661 ASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L   G    + +RVV +     G   +  C GTHVS   EI  + I+  +S++ 
Sbjct: 721 DKWGFVLYQGGAIPGNDIRVVDI-----GGIDTEACCGTHVSHLSEIGQIRILGVNSVQD 775

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R   + G+ A          +  + +     Q +++    + +     L      + 
Sbjct: 776 GVFRCTFVAGKLAIKAACEDMRLIHDVCTVYGCQQSDIMMNCNKFFAAKNSL--TSQNKA 833

Query: 779 LQLNVEDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           L   V  L     A      H++  SE +       +D   K+     +    I  +   
Sbjct: 834 LTDQVISLLVKCCAYQPGDKHVVIRSEENGTSFIKGIDEACKQFPE--MANKSILVQGPT 891

Query: 837 SVLIVVTEDLLDRF 850
            ++ +V +D+ D+ 
Sbjct: 892 YIVGMVQQDIADKL 905


>gi|123455522|ref|XP_001315505.1| alanyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
 gi|121898183|gb|EAY03282.1| alanyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
          Length = 1009

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 169/914 (18%), Positives = 317/914 (34%), Gaps = 168/914 (18%)

Query: 9   TTFLEFFQKNG------HELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAV 61
             +L+F +         +  +    ++      + F  +G+  F+    TG+ +P    +
Sbjct: 94  QAWLDFKKSMETNTPVPYTAIKRYPVVCRWRSDVDFVAAGIYCFQPFCVTGESEPPANPL 153

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              Q C+R     NDLDN+G T RH++ F MLG   F                      D
Sbjct: 154 CACQFCLR----FNDLDNIGITGRHYSGFNMLGIQVFN-------------------HAD 190

Query: 122 QRRLYITVYDEDEEAF---KLWKKISGLSADKII----RITTNDNFWSMAETGPCGPCSE 174
           + R     + E EE F    L         + +     ++T  ++ W+    G CG C E
Sbjct: 191 RARKEPNQFGETEEIFWKDTLIANNYRWCTETLHLDPKKLTFIEDVWAGG--GNCGACVE 248

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
            F+                    +EI N+VF ++    + E   +    +D G+GLER+ 
Sbjct: 249 YFY------------------GGLEIGNMVFTEYTVSPQGEFSPISTKVVDVGIGLERIP 290

Query: 235 TVLQEKTNNY----------------------------------DIDLFKHLIQASEQV- 259
            ++     +Y                                  D D  +H+ Q   +V 
Sbjct: 291 WLVNGGWTSYLDVFDYILPVLSQKLDVPIDTPEFRKFAPNTALFDADENQHIEQTWAKVG 350

Query: 260 --TGMKYEG--------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
              G+   G            +   I DH R+  + I DG LP+N G    +R I+R   
Sbjct: 351 EEMGLDKAGLAKFRQHLRQFSDLVRICDHTRTVLYAIEDGALPSNNGGAANIRDILRIVF 410

Query: 310 CYARLLGYTEPLMMHL--LPALCTEMGSAYPELI------QAKLLIEETLRSEDERFGKT 361
              +   +    +  +  +  +     +    L            +E+ +R E  R+  +
Sbjct: 411 DIIKKHNW----LGKIGGVDGIIDVFKAHMKGLEGFFGPFSNTRCLEDVIRLEFTRWENS 466

Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
               + LL   ++     E +          ++G+  D + +         +D  +    
Sbjct: 467 HANAIKLLKSFVNKWRGKE-IPVQEWITQMTSNGVSADEIIEAFQ------VDDPN---- 515

Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481
                               + ++  L+E    T   G +L + +     D + +   P 
Sbjct: 516 --------------SQLQKPDDLYIKLEEYKCRTAK-GIELEKYNVEGIPDTEEIYNYPE 560

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
            +     ++ +  ++   ++V            FD+T  Y   GGQ  D G         
Sbjct: 561 NEYKYEGTAKLIKLLAPNKLV------------FDRTILYPTQGGQEHDDGKIKIGDKLY 608

Query: 542 QITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           ++ +++K  +  IF     V+           + +D + R  +   HSATHL+  A   +
Sbjct: 609 EVQNIEKVRKVAIFTVDGDVDEKY--VNTECTMYVDPEVREIMRTQHSATHLVAAAARRV 666

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
           LG HV QNG+  T      D+TH    T  ++  I+   N++I  N  V   +  R++A 
Sbjct: 667 LGPHVWQNGAKKTKVESHIDLTHYSLPTFEQVLEIQRVANELIMTNAAVKKCVYTRKEAE 726

Query: 661 ASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                 L   G    + +RVV +     G   +  C GTHVS   EI  + I+  +S++ 
Sbjct: 727 DKWGFVLYQGGAIPGNDIRVVDI-----GGIDTEACCGTHVSHLSEIGQIRILGVNSVQD 781

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R   + G+ A          +  + +     Q +++    + +     L      + 
Sbjct: 782 GVFRCTFVAGKLAIKAACEDMRLIHDVCTVYGCQQSDIMMNCNKFFAAKNSL--TSQNKA 839

Query: 779 LQLNVEDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           L   V  L     A      H++  SE +       +D   K+     +    I  +   
Sbjct: 840 LTDQVISLLVKCCAYQPGDKHVVIRSEENGTSFIKGIDEACKQFPE--MANKSILVQGPT 897

Query: 837 SVLIVVTEDLLDRF 850
            ++ +V +D+ D+ 
Sbjct: 898 YIVGMVQQDIADKL 911


>gi|259015929|gb|ACV89248.1| alanyl-tRNA synthetase [Musca domestica]
          Length = 266

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 113/268 (42%), Positives = 148/268 (55%), Gaps = 24/268 (8%)

Query: 48  NIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
            IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YF
Sbjct: 1   PIFLGXADPNSDMSKWLRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRI 154
           K+     AW+ LT+   LD+ RLY+T +  DE        E  ++W  + GL A+ II  
Sbjct: 61  KKEICAWAWEFLTERLGLDKDRLYVTYFGGDETSGLEPDLECKQIWMNL-GLKAEHIIPG 119

Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
              DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++   
Sbjct: 120 NMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQDG 178

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN------ 268
               LPK  ID GMG ER+ +V+Q K +NYD D+F  L  A    TG    G        
Sbjct: 179 SLKPLPKKHIDCGMGFERLVSVIQNKRSNYDTDIFVPLFDAIHVGTGCAPYGGKVGAEDV 238

Query: 269 ---IVNHRVIVDHLRSSSFLIADGILPA 293
               + +RV+ DH R+ +  +ADG +P 
Sbjct: 239 TGVDMAYRVLADHARTLTXALADGGVPD 266


>gi|169835836|ref|ZP_02869024.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 326

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 124/331 (37%), Positives = 184/331 (55%), Gaps = 12/331 (3%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + I+   R+ +  NH+ATH+LH  L   LG+HV Q+GS +  + LRFD +H + I    +
Sbjct: 1   MKINADRRKDIQRNHTATHILHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAIEPEMI 60

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           + IE  VNDII  NL V     N EDA   GA AL   KY D VRVV ++      +S  
Sbjct: 61  EKIEKAVNDIILSNLKVKIDFENIEDAKKRGAMALFSDKYGDVVRVVEIDG-----YSIE 115

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LCGG HV STGEI L  I SES I +G RRI A TG  +  ++   +EKL  +A  LK  
Sbjct: 116 LCGGAHVKSTGEIGLFNIESESGIASGTRRITATTGHASLKYVNNLEEKLSKVAGMLKTD 175

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSK 807
             NVV  VE+   E + +   + + + +L   ++     +  +I  V  +       D  
Sbjct: 176 GKNVVDVVEKYIAEAKNIVKEYEQLQTKLVKYEINELLENVDEINGVKVLKAAFENKDVN 235

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           ELK ++D  ++K+QSGII+L G +   KA  ++ VT+DL+ +  A ++ +++A+ + GG 
Sbjct: 236 ELKEIVDRGKEKLQSGIIIL-GTNNGGKAIFVVGVTKDLISKVKAGEIVKVAAQ-VAGGN 293

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGRP  AQ+GG +GN   +A+     F+ +
Sbjct: 294 GGGRPDFAQAGGKDGNAVKEAVDKAFEFVNE 324


>gi|297197300|ref|ZP_06914697.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|297146671|gb|EFH28278.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 389

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 211/409 (51%), Gaps = 35/409 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M    ++R  F +F+++ GH L+  S+L+P     ++FT SGM P      G+  P  + 
Sbjct: 1   MDTDRTVR-VFTDFYRERGHHLITGSTLLPPPGDPVLFTTSGMHPLTPFLEGRPHPRGRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +  VQ+C+R      DLD VG  + H T FEMLG++S G Y   ++++  ++LL   F +
Sbjct: 60  LVNVQRCLRT----TDLDEVG-DSTHLTVFEMLGSWSLGDYGHPQSLRWGYELLRDGFGV 114

Query: 121 DQRRLYITVYDED------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
              +L++TV+  D       E+ + W+++     +  + +T  DN+WS    GPCGP SE
Sbjct: 115 PHEQLHVTVFGGDGQVGPDLESLRTWEEL-----EVPVELTREDNWWSNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF   G   P G P +     R++EIWN V M++ +        L +  IDTGMGLER+ 
Sbjct: 170 IFVWTGGTPPRGTPTT---DPRWVEIWNHVVMRYRRHEDGSLQPLRRPGIDTGMGLERLV 226

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           TVLQ + + +D DLF+   +    +  +     +  + R++ DHLRS+  +I DG+ P+N
Sbjct: 227 TVLQGRDSVHDTDLFEPWRRLLRPLWEL-----DEPSLRLVCDHLRSAVVVIGDGVRPSN 281

Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK--LLIEETLR 352
            GRGYVLRRI+RR +   R     +P    L       +        Q+    L+ + L 
Sbjct: 282 TGRGYVLRRIVRRLLTTLRR---DDP-SRTLCDLPVELVQYTLEHFRQSCGTDLVRDVLV 337

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401
            E+ RF    DR L     +LS       L+G+    L+DTHGLP D++
Sbjct: 338 EEERRF----DRLLERGRRLLSGPRYRGPLSGEDYDYLHDTHGLPRDLV 382


>gi|302518052|ref|ZP_07270394.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426947|gb|EFK98762.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 403

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 131/426 (30%), Positives = 210/426 (49%), Gaps = 50/426 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +   F EF+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +
Sbjct: 5   TTDQVSRRFTEFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRL 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D
Sbjct: 65  VNVQRCLRT----TDLEEVG-DPTHLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGID 119

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            R L+ TV+  DE       + ++W+++ G+  ++    T  DN+WS   TGPCGP SEI
Sbjct: 120 PRLLHTTVFGGDERVGPDLASLEVWERL-GVPVER----TAEDNWWSNGPTGPCGPDSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P   P   E   R++E+WN V M+  +        LP+ ++DTG+GLER+A+
Sbjct: 175 FLWTGDGPPESTPTGDE---RWVEVWNHVMMRHRRLADGSLVPLPQRNVDTGLGLERLAS 231

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ + + +D D+F+   +    + G+     +  + R++ DHLRS+  ++ DG+ PA  
Sbjct: 232 LLQGERSVFDGDVFEPWRRLLPPLWGL-----DETSVRLVSDHLRSAVVVLGDGVRPAAT 286

Query: 296 GRGY--------VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           GRGY        VL  + R    Y          +  L   L T     + +  +    +
Sbjct: 287 GRGYVLRRLVRRVLTTLWRTDSSYG---------LGELPRELVTGTLGHFGQGGEDPETV 337

Query: 348 EET---LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
                 L  E+ RF   LDRG      VL+       L+      L+DTHGLP D+++  
Sbjct: 338 RRVLGTLAEEETRFRSLLDRGR----RVLAGPRFRGPLDEADLHYLHDTHGLPRDLVES- 392

Query: 405 LCARGL 410
           L   G+
Sbjct: 393 LREEGV 398


>gi|302551517|ref|ZP_07303859.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302469135|gb|EFL32228.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 396

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 138/415 (33%), Positives = 211/415 (50%), Gaps = 35/415 (8%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+   ++R TF +F+++ GH L+  S+L+P     ++FT SGM P      G+     + 
Sbjct: 1   MNTDRTVR-TFTDFYRERGHRLVTGSTLLPPPSDPVLFTTSGMHPLTPYLMGRPHSQGRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +T VQ+C+R      DLD VG  + H T FEMLG++S G Y  E++++ A +LL   F +
Sbjct: 60  LTNVQRCLRT----TDLDEVG-DSTHLTVFEMLGSWSLGDYGHEQSLRWAHELLRDGFGI 114

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
               L+ TV+  D+      E+ + W+++ G+     + +T  +N+W     GPCGP SE
Sbjct: 115 PHGHLHATVFGGDDQVGPDTESLRTWRQL-GVP----VELTREENWWDNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233
           IF   G   PG  P GS     R++EIWN V M++++Q       LP+ SIDTGMGLER+
Sbjct: 170 IFVWTGG--PGTPPQGSPTTDPRWVEIWNHVLMRYDRQEDGTLEPLPRPSIDTGMGLERL 227

Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293
            TVLQ  T+ YD DLF+  ++    +  +     +    R++ DHLRSS  ++ DG+ P 
Sbjct: 228 VTVLQGHTSVYDSDLFEPWMRLLPPLWDL-----DEPTLRLVSDHLRSSVVILGDGVHPT 282

Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
             GRGY    + R        L   +P   +  L   L     + +         + E L
Sbjct: 283 ANGRGY---VLRRLVRRLLTALWRDDPSRTLSDLPVELLDHTLAHF-HQPGGSTPVREVL 338

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
             E+ RF   L RG      VLS       L+ D   +L+DT+GLP D++  +L 
Sbjct: 339 LGEERRFATLLVRGR----RVLSRPEFRGPLSEDDYDRLHDTYGLPRDLVAGLLA 389


>gi|48927|emb|CAA42581.1| alanyl-tRNA synthetase [Sinorhizobium meliloti]
          Length = 201

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 138/201 (68%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+  Y  
Sbjct: 1   MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L
Sbjct: 61  AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D +RL +TVY  D++ F LWKKI+GLS D IIRI T+DNFW+M +TGPCGPCSEIF+D G
Sbjct: 121 DAKRLLVTVYHTDDDTFGLWKKIAGLSDDHIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180

Query: 181 ECIPGGLPGSS-EEGERYIEI 200
           + I GG PGS+ E+G+R+IEI
Sbjct: 181 DHIWGGPPGSAEEDGDRFIEI 201


>gi|318060582|ref|ZP_07979305.1| alanyl tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318076177|ref|ZP_07983509.1| alanyl tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 403

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 130/420 (30%), Positives = 209/420 (49%), Gaps = 49/420 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPC-NDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               +   F EF+++ GH  +  S+L+P   D +++FT SGM P      G+  P+ + +
Sbjct: 5   TTDQVSRRFTEFYEERGHARITGSTLLPPPGDDSVLFTTSGMHPLTPYLEGRPHPLGRRL 64

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DL+ VG    H T FEMLG +S G Y   R+++  ++LLT    +D
Sbjct: 65  VNVQRCLRT----TDLEEVG-DPTHLTVFEMLGTWSLGDYEGPRSLEWGYELLTDGLGID 119

Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
            R L+ TV+  DE       + ++W+++ G+  ++    T  DN+WS   TGPCGP SEI
Sbjct: 120 PRLLHTTVFGGDERVGPDLASLEVWERL-GVPVER----TAEDNWWSNGPTGPCGPDSEI 174

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P   P   E   R++E+WN V M+  +        LP+ ++DTG+GLER+A+
Sbjct: 175 FLWTGDGPPESTPTGDE---RWVEVWNHVMMRHRRLADGSLVPLPQRNVDTGLGLERLAS 231

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ + + +D D+F+   +    + G+     +  + R++ DHLRS+  ++ DG+ PA  
Sbjct: 232 LLQGERSVFDGDVFEPWRRLLPPLWGL-----DETSVRLVSDHLRSAVVVLGDGVRPAAT 286

Query: 296 GRGYVLR--------RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
           GRGYVLR         + R    Y          +  L   L T     + +  +    +
Sbjct: 287 GRGYVLRRLVRRVLTMLWRTDSSYG---------LGELPRELVTGTLGHFGQGGEDPETV 337

Query: 348 EET---LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
                 L  E+ RF   LDRG      VL+       L+      L+DTHGLP D+++ +
Sbjct: 338 RRVLGTLAEEETRFRSLLDRGR----RVLAGPRFRGPLDEADLHYLHDTHGLPRDLVESL 393


>gi|37573979|gb|AAH58620.1| Aars protein [Mus musculus]
          Length = 507

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 130/489 (26%), Positives = 210/489 (42%), Gaps = 59/489 (12%)

Query: 464 RGSKFMKEDRKVLCQKPPI--DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
           +G +   +  K   Q       +     + V A+ ++   V+E V+GQ+  VV D+T FY
Sbjct: 15  KGLEATDDSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTCFY 74

Query: 522 AEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           AE GGQ+ D G  +       D     + + Q +  G  +H   +  G L+    + L I
Sbjct: 75  AEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR-GGYVLHIGTI-YGNLKVGDQVRLFI 132

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  
Sbjct: 133 DEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGAMSTQQIKKA 191

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------Y 683
           E+ VN +I    PV T+      A A  G  A+    Y D VRVVS+             
Sbjct: 192 EEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCG 251

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             G + S   CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   K
Sbjct: 252 PAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKK 311

Query: 744 SLASF---LK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCH 789
           SL++    +K       +V   + ++ E        +++K +     + L+  ++DL   
Sbjct: 312 SLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKVMDDLDRA 371

Query: 790 KIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830
             ADV                     +  + S   +K L   +   +        ML  +
Sbjct: 372 SKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTV 431

Query: 831 SKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
             E  K + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A
Sbjct: 432 DNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEA 490

Query: 889 IAGVASFLK 897
           +    SF +
Sbjct: 491 LQLATSFAQ 499


>gi|18652852|dbj|BAB84685.1| Ala-tRNA synthetase [Methylobacillus glycogenes]
          Length = 315

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 114/320 (35%), Positives = 171/320 (53%), Gaps = 13/320 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +HSATHL+H AL  +LG HV Q GS +  D  RFD +H+ P+T+ E++ IE+ VN  I
Sbjct: 1   MRHHSATHLMHKALREVLGGHVQQKGSLVDSDKTRFDFSHNAPVTAEEIRRIEEIVNTEI 60

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             N P   R+M  ++A  +G   L G KY D VRV+ +        S  LCGGTHVS TG
Sbjct: 61  LANAPTQARVMPIDEAQKTGTMMLFGEKYGDEVRVIDIGS------SRELCGGTHVSRTG 114

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  +VSES + AG+RRIEA TG  A  H+  Q + L   A+  K     + G + + 
Sbjct: 115 DIGLFKVVSESGVAAGVRRIEAATGDVALHHIQQQQQLLADAAASFKAPAAELAGEISQT 174

Query: 764 WEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            ++ + L+   A+ K +L              +  V  ++  +   D+  L+  MD L+ 
Sbjct: 175 LDQLKSLEKELARLKSKLASSQGDELASQAVDVDGVKVLAATLEGADANTLRETMDKLKD 234

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           K+++  I+L  ++ + K SV   VT D L +  A +L    A  + GG GGG+P MA +G
Sbjct: 235 KLKTAAIVLASVNGD-KVSVAAGVTADTLAKVKAGELVNFVAAQV-GGKGGGKPDMAMAG 292

Query: 879 GPNGNKADQAIAGVASFLKK 898
           G +  K  QA+  VA ++ +
Sbjct: 293 GTDAGKLPQALVSVAGWVGE 312


>gi|135091|sp|P24075|SYA_RHILV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA
           ligase; Short=AlaRS
 gi|48924|emb|CAA42579.1| alanyl-tRNA synthetase [Rhizobium leguminosarum]
          Length = 201

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 140/201 (69%), Positives = 164/201 (81%), Gaps = 1/201 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVR GGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRVGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
            + RL +TVY EDEEA  LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG
Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180

Query: 181 ECIPGGLPGSS-EEGERYIEI 200
           E + GG PGS  E+G+R++E 
Sbjct: 181 ENVWGGPPGSPEEDGDRFLEF 201


>gi|225629867|ref|ZP_03787773.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591275|gb|EEH12409.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 212

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 130/218 (59%), Positives = 161/218 (73%), Gaps = 7/218 (3%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
             ++ IR  F++FF  N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K   +  
Sbjct: 1   MKLNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRA 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
            + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE  LD
Sbjct: 61  VSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLD 120

Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181
           + RL ITVY  D+EA+++W+KISG S+DKIIRITT+DNFWSM  TGPCGPCSEIF+D G 
Sbjct: 121 KNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHGS 180

Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL 219
                   + +EG+R +EIWNLVFM+F +  +      
Sbjct: 181 P-------NLQEGDRIVEIWNLVFMEFNKDEEGNLHKC 211


>gi|217033202|ref|ZP_03438651.1| hypothetical protein HPB128_150g2 [Helicobacter pylori B128]
 gi|216945066|gb|EEC23778.1| hypothetical protein HPB128_150g2 [Helicobacter pylori B128]
          Length = 367

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 184/381 (48%), Gaps = 24/381 (6%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           V  +TPFYAE GG +GD G    D     +    K   G+      +++  L+    ++ 
Sbjct: 3   VVRKTPFYAEGGGAIGDRGTLFKDNEEAALVLDTKNFFGLNFSLLEIKKA-LKKGDQVIA 61

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +    R +++ +HSATHLL  AL  +LGSHVSQ GS +    LRFD +H+K +   EL+
Sbjct: 62  QV-SDERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELE 120

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +ED VN  I ++L      M    A   GA AL   KY + VRVVS +       S  L
Sbjct: 121 KVEDLVNAQIFKHLTSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFK-----EVSIEL 175

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV +TG I    IV ES + +G+RRIEA+ G+        ++++LK+  + LK + 
Sbjct: 176 CGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNN- 234

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +V+  + ++ E  +  Q             DL   KI  V+ +  ++ + D   +K ++
Sbjct: 235 -DVIAGINKLKESVKNSQKAPVSM-------DLPIEKIHGVSLVVGVVEQGD---IKEMI 283

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           D L+ K +  + M+     E + ++   V         A   A   A++L GG GGGR  
Sbjct: 284 DRLKSKHERLLAMVFKKENE-RITLACGVKNAP---IKANAWANEVAQIL-GGKGGGRDD 338

Query: 874 MAQSGGPNGNKADQAIAGVAS 894
            A +GG +  K   A+    +
Sbjct: 339 FASAGGKDTEKLQAALNLAKN 359


>gi|330960443|gb|EGH60703.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 329

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 122/311 (39%), Positives = 175/311 (56%), Gaps = 11/311 (3%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            +  + R   S+NHSATHLLH AL  +LG HV Q GS +    LRFD +H + I   +L+
Sbjct: 4   QVSDEVRNATSLNHSATHLLHAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLR 63

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           ++ED VN  I +N PVVT   + E A   GA AL G KY D VRV+S+    GG  S  L
Sbjct: 64  ALEDIVNAEIRKNTPVVTEETDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFSVEL 119

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG H S TG+I L  IVSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++
Sbjct: 120 CGGIHASRTGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNR 179

Query: 754 GNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKE 808
            N++ ++  + E  R  + QL   + K      D    +   +  V  ++  +   D K 
Sbjct: 180 DNLLDKLTAVLERNRLLEKQLEQLQAKAASAAGDDLSSAAQDVKGVKVLATRLDGQDGKA 239

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L +++D L+ K+   +I+L G   E K  ++  VT+DL  +  A DL + +A  +GG GG
Sbjct: 240 LLALVDQLKNKLGRAVILL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAVGGKGG 298

Query: 869 GGRPHMAQSGG 879
            GRP MAQ GG
Sbjct: 299 -GRPDMAQGGG 308


>gi|320534361|ref|ZP_08034847.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133403|gb|EFW25865.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 277

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 113/275 (41%), Positives = 166/275 (60%), Gaps = 16/275 (5%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
              S IR+ +L++F  N HE+ PS SL+   +P+++FT +GMVPF     G E+  +   
Sbjct: 1   MRTSEIRSRWLDYFAANEHEIRPSVSLVSP-EPSILFTVAGMVPFIPYILGTEEAPWPRA 59

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE---- 117
            +VQKC+R     ND+DNVG T RH TFF+M GNFSFG YFKE AI  AW LLT      
Sbjct: 60  ASVQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEG 115

Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
            + LD  RL++T+++ED+ +   W +  G+ A++I  +   D  WS  + GP G C EI 
Sbjct: 116 GYGLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIH 175

Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE-----RFILPKMSIDTGMGL 230
           +D+G    P G P    +G+R++EIWNLVF +F +   +         L + +IDTG GL
Sbjct: 176 YDRGPDYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGL 235

Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265
           ER+A ++Q+K N Y+ID    +I+A+E+++G  Y 
Sbjct: 236 ERLAFIMQDKPNMYEIDEVFPVIKAAEELSGKVYG 270


>gi|241563387|ref|XP_002401683.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215501875|gb|EEC11369.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 207

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 132/203 (65%), Positives = 159/203 (78%), Gaps = 1/203 (0%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
               +R+ F+ +F+ N H  +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK  Y    
Sbjct: 5   TTEEVRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAA 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
           T QK +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI  AW+LLTKEF+L +
Sbjct: 65  TSQKSLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPK 124

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
            +LY T+Y  D+EA   WKKI+G   D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE 
Sbjct: 125 DKLYATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQ 184

Query: 183 IPGGLPGS-SEEGERYIEIWNLV 204
           I GGLPG+  E+G+R+IEIWN+V
Sbjct: 185 IYGGLPGTKDEDGDRFIEIWNMV 207


>gi|256783097|ref|ZP_05521528.1| alanyl tRNA synthetase [Streptomyces lividans TK24]
 gi|289766980|ref|ZP_06526358.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|289697179|gb|EFD64608.1| alanyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 404

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 219/417 (52%), Gaps = 42/417 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R TF+E+++  GH  +  S+L+P     ++FT++GM P      G+  P+ + 
Sbjct: 1   MDTEHVLR-TFVEYYEDQGHRRITGSTLLPEPGDPVLFTSAGMHPLTPYLEGRPHPLGRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +  VQ+C+R      DLD VG  + H T FEMLG +S G Y   R++  A  LLT+   +
Sbjct: 60  LVNVQRCLRT----TDLDEVG-DSTHLTVFEMLGTWSLGDYEGSRSLDWAHRLLTEGLGV 114

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D   L+ TVY   E      E+ +LW++  G+  ++    T +DN+WS    GPCGP SE
Sbjct: 115 DPGLLHATVYGGGEQVGPDTESLRLWQE-RGVPVER----TVDDNWWSNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF   G+  P   P      +R++E+WN V M+  + +      LP+ ++DTG+GLER+A
Sbjct: 170 IFLWSGDTPPRSTP---TGDDRWVEVWNHVMMRHRRLDDGRLVPLPQRNVDTGLGLERLA 226

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ K++ ++ D+F+   +    +  +     +  + RV+ DHLRS+  ++ DG+ P+N
Sbjct: 227 MLLQGKSSVFECDVFEPWRRLLPVLWPL-----DEPSFRVVCDHLRSAVVVVGDGVRPSN 281

Query: 295 EGRGYVLRRIMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
            GRGYVLRR++RR +        +R LG   + L+ H L     +     P L++     
Sbjct: 282 TGRGYVLRRLVRRLLTVLWRDDPSRGLGDLPDELITHTLDHFRQDGDPGLPGLVR----- 336

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
              L  E+ RF + LDRG      VL+       L  +    L+DTHGLP +++  +
Sbjct: 337 -RLLVEEERRFRRLLDRGRN----VLARPRFRGPLGEEDFHYLHDTHGLPRELVTSL 388


>gi|21225863|ref|NP_631642.1| alanyl tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|11228499|emb|CAC16521.1| putative alanyl tRNA synthetase [Streptomyces coelicolor A3(2)]
          Length = 404

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 219/417 (52%), Gaps = 42/417 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +R TF+E+++  GH  +  S+L+P     ++FT++GM P      G+  P+ + 
Sbjct: 1   MDTEHVLR-TFVEYYEDQGHRRITGSTLLPEPGDPVLFTSAGMHPLTPYLEGRPHPLGRR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +  VQ+C+R      DLD VG  + H T FEMLG +S G Y   R++  A  LLT+   +
Sbjct: 60  LVNVQRCLRT----TDLDEVG-DSTHLTVFEMLGTWSLGDYEGSRSLDWAHRLLTEGLGV 114

Query: 121 DQRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D   L+ TVY   E      E+ +LW++  G+  ++    T +DN+WS    GPCGP SE
Sbjct: 115 DPGLLHATVYGGGEQVGPDTESLRLWQE-RGVPVER----TVDDNWWSNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IF   G+  P   P      +R++E+WN V M+  + +      LP+ ++DTG+GLER+A
Sbjct: 170 IFLWSGDTPPRSTP---TGDDRWVEVWNHVMMRHRRLDDGRLVPLPQRNVDTGLGLERLA 226

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ K++ ++ D+F+   +    +  +     +  + RV+ DHLRS+  ++ DG+ P+N
Sbjct: 227 MLLQGKSSVFECDVFEPWRRLLPVLWPL-----DEPSFRVVCDHLRSAVVIVGDGVRPSN 281

Query: 295 EGRGYVLRRIMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
            GRGYVLRR++RR +        +R LG   + L+ H L     +     P L++     
Sbjct: 282 TGRGYVLRRLVRRLLTVLWRDDPSRGLGDLPDELITHTLDHFRQDGDPGLPGLVR----- 336

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404
              L  E+ RF + LDRG      VL+       L  +    L+DTHGLP +++  +
Sbjct: 337 -RLLVEEERRFRRLLDRGRN----VLARPRFRGPLGEEDFHYLHDTHGLPRELVTSL 388


>gi|211827288|gb|AAH26611.2| Aars protein [Mus musculus]
          Length = 458

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 199/454 (43%), Gaps = 57/454 (12%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKA 550
           ++   V+E V+GQ+  VV D+T FYAE GGQ+ D G  +       D     + + Q + 
Sbjct: 1   REKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR- 59

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G  +H   +  G L+    + L ID   RR +  NH+ATH+L+ AL ++LG    Q GS
Sbjct: 60  GGYVLHIGTI-YGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQKGS 117

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLG 669
            + PD LRFD T    +++ ++K  E+ VN +I    PV T+      A A  G  A+  
Sbjct: 118 LVAPDRLRFDFTAKGAMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFD 177

Query: 670 TKYNDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
             Y D VRVVS+               G + S   CGGTH+ ++       IV+E +I  
Sbjct: 178 ETYPDPVRVVSIGVPVSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAK 237

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASF---LK---VSQGNVVGRVEEIWE------- 765
           GIRRI A+TG  A+  L   +   KSL++    +K       +V   + ++ E       
Sbjct: 238 GIRRIVAVTGAEAQKALRKSETLKKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVI 297

Query: 766 -EYRKLQLIHAKRKLQLNVEDLSCHKIADVN-------------------FMSHIISEVD 805
            +++K +     + L+  ++DL     ADV                     +  + S   
Sbjct: 298 PQWQKDEQRETLKSLKKVMDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGAS 357

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863
           +K L   +   +        ML  +  E  K + L  V ++  +R   A +  +  +  L
Sbjct: 358 AKALNEALKLFKTHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-L 416

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG+   AQ+ G N     +A+    SF +
Sbjct: 417 MDGKGGGKDMSAQATGKNVGCLQEALQLATSFAQ 450


>gi|289677326|ref|ZP_06498216.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 199

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/200 (58%), Positives = 140/200 (70%), Gaps = 10/200 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGP 179

Query: 172 CSEIFFDQGECIPGGLPGSS 191
           CSEIFFD G  I GG PGS 
Sbjct: 180 CSEIFFDHGPEIWGGPPGSP 199


>gi|90076782|dbj|BAE88071.1| unnamed protein product [Macaca fascicularis]
          Length = 410

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/241 (43%), Positives = 143/241 (59%), Gaps = 15/241 (6%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
             S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6   TASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65

Query: 60  --AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
                  QKC+RAGGKHNDLD+VG+   HHTFFEMLG++SFG YFKE A ++A +LLT+E
Sbjct: 66  LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125

Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           F +   RLY+T +  DE        E  ++W+ + GL   KI+     DNFW M +TGPC
Sbjct: 126 FGIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184

Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229
           GPCSE  +D+           +++    +EIWNLVF+Q+ ++       LPK S D G  
Sbjct: 185 GPCSETHYDRIGG-RDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSTDLGEA 243

Query: 230 L 230
           L
Sbjct: 244 L 244



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
             +  ++++ ++  +      ++++    + L          +  + S   +K L   + 
Sbjct: 259 ETLKSLKKVMDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALK 318

Query: 815 ALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
             +        ML  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+ 
Sbjct: 319 LFKTHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKD 377

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
             AQ+ G N     +A+    SF +
Sbjct: 378 VSAQATGKNIGCLQEALQLATSFAQ 402


>gi|76664719|emb|CAJ17799.1| alanyl-tRNA synthetase [Candidatus Phytoplasma solani]
          Length = 259

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/264 (42%), Positives = 161/264 (60%), Gaps = 14/264 (5%)

Query: 75  NDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDE 132
           ND+ NVG T+RHHTFFEMLGNFS G YFK+ AIQ A++LLT  K F     +LYIT Y  
Sbjct: 2   NDIQNVGNTSRHHTFFEMLGNFSIGDYFKKEAIQYAYELLTSPKWFSFPVEKLYITYYPT 61

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPG 189
           D++A+K W ++ G+  + +I  +   NFW +   GP GPC+EIFFD+GE        L  
Sbjct: 62  DQDAYKHWLEV-GIPKEHLI--SLKSNFWQIG-PGPSGPCTEIFFDRGEKYDSRSQELII 117

Query: 190 SSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
              E +R+IEIWN+VF Q+        ++   LP  +IDTG GLER+A++LQ+  NN++ 
Sbjct: 118 KDLENDRFIEIWNIVFSQYNCDPHPLIEQYPELPSKNIDTGSGLERLASILQKTDNNFET 177

Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
           DLF  LIQ  + +    Y G    + ++I DH+++  F I DG    NE RGYVL++I++
Sbjct: 178 DLFFSLIQKIQHIAQTPYHGQK--SFKIIADHVKTLVFAINDGATLTNEKRGYVLKKILK 235

Query: 307 RAMCYARLLGYTEPLMMHLLPALC 330
           R++   + L   +P +  L+P   
Sbjct: 236 RSVNQGKKLNLDQPFLYQLVPQTV 259


>gi|309807424|ref|ZP_07701387.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
 gi|308169346|gb|EFO71401.1| alanine--tRNA ligase [Lactobacillus iners LactinV 01V1-a]
          Length = 236

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/242 (45%), Positives = 151/242 (62%), Gaps = 18/242 (7%)

Query: 22  LLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVG 81
           +L S+SLIP +DPTL++ NSG+   K  F G   P    +T+ QK +R     ND++NVG
Sbjct: 2   VLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSSQKSIRT----NDIENVG 57

Query: 82  RTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKL 139
           +T RH TFFEMLGNFS G YFKE  I  AW+ LT  K   LD  +LY+TVY +D +A++L
Sbjct: 58  KTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDPDKLYVTVYPKDTDAYRL 117

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-------ECIPGGLPGSSE 192
           W ++ GL    I+++   DNFW + E GPCGP SEIF+D+G       E  P   PG   
Sbjct: 118 WHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVAEDDPENFPGG-- 172

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           E  RY+EIWN+VF Q+      +    P  +IDTGMGLER+ +V+Q+   N++ DLF  +
Sbjct: 173 ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVSVIQDAPTNFETDLFMPI 232

Query: 253 IQ 254
           I+
Sbjct: 233 IK 234


>gi|291446832|ref|ZP_06586222.1| alanyl tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291349779|gb|EFE76683.1| alanyl tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 408

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 135/420 (32%), Positives = 205/420 (48%), Gaps = 45/420 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR TF+E++++ GH  +  S+L+P     ++FT SGM P      G+  P+ + 
Sbjct: 21  MRTDHIIR-TFVEYYEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGKR 79

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +  VQ+C+R      DLD VG    H T FEMLG +S G Y    ++   + LLT+   +
Sbjct: 80  LVNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPLSLDWGYGLLTEGLGI 134

Query: 121 DQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D   L+ T +  D+       + +LW+ + G+     + +T  DN+WS    GPCGP SE
Sbjct: 135 DPGLLHATAFAGDDRTGPDTASAELWQGL-GVP----VELTVEDNWWSNGPVGPCGPDSE 189

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IFF  G+  P   P      +R++E+WN V M   +        LP+ ++DTG+GLER+A
Sbjct: 190 IFFWSGDGPPRSTPIR---DDRWVEVWNHVTMTHRRHGDGSLVPLPQRNVDTGLGLERLA 246

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ K + +  D+F         +  ++         R+I DHLRS   L+ DG+ P+N
Sbjct: 247 ALLQGKQSVFACDVFAPWRHLVPPLWSLE-----EPACRLISDHLRSVVVLLGDGVRPSN 301

Query: 295 EGRGYVLRRIMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
            GRGYVLRR++RR +        +R LG   E L+ H L     +              +
Sbjct: 302 TGRGYVLRRLVRRVLTVLWREDASRTLGDLPEDLVHHTLDHFHQD---------ARPADV 352

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              L  E+ RFG+ L RG      VL+       L  +    L+DTHGLP D++  +   
Sbjct: 353 LRHLLDEEHRFGRLLTRGR----SVLARPRFRGPLAEEDFHYLHDTHGLPRDLVTSLREE 408


>gi|239943365|ref|ZP_04695302.1| putative alanyl-tRNA synthetase [Streptomyces roseosporus NRRL
           15998]
 gi|239989818|ref|ZP_04710482.1| putative alanyl-tRNA synthetase [Streptomyces roseosporus NRRL
           11379]
          Length = 388

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 135/420 (32%), Positives = 205/420 (48%), Gaps = 45/420 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     IR TF+E++++ GH  +  S+L+P     ++FT SGM P      G+  P+ + 
Sbjct: 1   MRTDHIIR-TFVEYYEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGKR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           +  VQ+C+R      DLD VG    H T FEMLG +S G Y    ++   + LLT+   +
Sbjct: 60  LVNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPLSLDWGYGLLTEGLGI 114

Query: 121 DQRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174
           D   L+ T +  D+       + +LW+ + G+     + +T  DN+WS    GPCGP SE
Sbjct: 115 DPGLLHATAFAGDDRTGPDTASAELWQGL-GVP----VELTVEDNWWSNGPVGPCGPDSE 169

Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234
           IFF  G+  P   P      +R++E+WN V M   +        LP+ ++DTG+GLER+A
Sbjct: 170 IFFWSGDGPPRSTPIR---DDRWVEVWNHVTMTHRRHGDGSLVPLPQRNVDTGLGLERLA 226

Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
            +LQ K + +  D+F         +  ++         R+I DHLRS   L+ DG+ P+N
Sbjct: 227 ALLQGKQSVFACDVFAPWRHLVPPLWSLE-----EPACRLISDHLRSVVVLLGDGVRPSN 281

Query: 295 EGRGYVLRRIMRRAMCY------ARLLG-YTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
            GRGYVLRR++RR +        +R LG   E L+ H L     +              +
Sbjct: 282 TGRGYVLRRLVRRVLTVLWREDASRTLGDLPEDLVHHTLDHFHQD---------ARPADV 332

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              L  E+ RFG+ L RG      VL+       L  +    L+DTHGLP D++  +   
Sbjct: 333 LRHLLDEEHRFGRLLTRGR----SVLARPRFRGPLAEEDFHYLHDTHGLPRDLVTSLREE 388


>gi|259015945|gb|ACV89255.1| alanyl-tRNA synthetase [Blattella germanica]
          Length = 252

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/254 (41%), Positives = 145/254 (57%), Gaps = 24/254 (9%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRTVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+ F L   RLY+T +        + DEE  ++W  + G+    ++  + 
Sbjct: 61  EICAWAWELLTEVFKLPADRLYVTYFGGDKAAKLEPDEECRQIWINL-GVPPAHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RDAAHLVNQDDPDVLEIWNLVFIQFNRETDGSL 178

Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN------- 268
             LPK  ID G+GLER+ +V+Q+K  NYD DLF  L  + ++ TG   Y+G         
Sbjct: 179 KPLPKKHIDCGLGLERLVSVIQQKRANYDTDLFMPLFDSIQKGTGAPSYKGRVGEEDVDG 238

Query: 269 -IVNHRVIVDHLRS 281
             + +RV+ DH R+
Sbjct: 239 MDMAYRVLADHART 252


>gi|290559656|gb|EFD92983.1| Alanine--tRNA ligase [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 675

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 147/686 (21%), Positives = 246/686 (35%), Gaps = 160/686 (23%)

Query: 6   SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAVTTV 64
            I   F +FF K  H  +    ++      + F  + +  F      G  +P    +   
Sbjct: 78  DIWKLFSQFFSKKKHTEIKRYPVVARWRDDIYFVEAAIDDFAPYVIKGTAEPPANPLVVP 137

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLTKEFD 119
           Q C R     ND++NVG T RH T F M    +F       YF E AI    + L K   
Sbjct: 138 QICFR----FNDINNVGLTGRHLTSFVMAEEAAFNTKEKKTYFDEEAIIYITEWLLKGLK 193

Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
           + +  L                             T  ++ W+ A     G C E F   
Sbjct: 194 IKKEEL-----------------------------TFIEDAWAGAGY--AGSCLEYF--- 219

Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
                             +E+ N V+M++   + +    LP  +ID G GLER + V   
Sbjct: 220 ---------------AGGLELGNQVYMRYIIGSDK-LEDLPTKTIDMGAGLERWSWVSSS 263

Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI------------------------------ 269
               Y+   F  +I   +    + Y   +I                              
Sbjct: 264 TPTIYEA-TFPKVINFIKNKANVNYSDKDIKEVYQYLGKFDFEKTEFNEALEIIANKTKF 322

Query: 270 ---------VNHRV---IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317
                     + R    I DH R+    I DG LP+N G GY LR I+RR++ +     +
Sbjct: 323 NTAEIKKMVSDMRAVYSIADHTRTLLIAIHDGSLPSNVGGGYNLRNILRRSLNFIDSKNW 382

Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377
              +   ++     E+ + YPEL   +    E +  E ER+ ++  R   ++   +    
Sbjct: 383 KIDI-NDVINEHKKELKTLYPEL--MQTECTEVINKEIERYKESKSRNAKIISEYV---- 435

Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437
           K   ++ +   KLY++ G+ +D +QD     G   I   +F   +   +           
Sbjct: 436 KKGKIDNNEMLKLYESEGVTIDDLQDAAERAGKNIIIPENFYSNINRTK----------- 484

Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497
           +   +K    L +    T+ + YD                     +LT   + I+K I  
Sbjct: 485 TSEIKKQDTDLIKGIKKTEKLFYDE--------------------ELTESRAKIIKIIKP 524

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                          V+ D+T FY E GGQ  D G    +    ++TDV K  E + +H+
Sbjct: 525 N-------------MVILDKTIFYPEMGGQKADNGFIEKN----RVTDV-KVLEDVIIHY 566

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                G ++   ++ + +D + R  L  +H+ATH+++ A   ILG  V QN +      +
Sbjct: 567 LDNIDG-IKEGQNVDIKVDSERRELLRRHHTATHIINQASRRILGQFVYQNINEKKLLAV 625

Query: 618 RFDVTHSKPITSAELKSIEDNVNDII 643
                    I S+EL ++ D+   +I
Sbjct: 626 YDSANSLTKINSSELTNVSDDNIKLI 651


>gi|326777472|ref|ZP_08236737.1| Alanine--tRNA ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326657805|gb|EGE42651.1| Alanine--tRNA ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 388

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 206/412 (50%), Gaps = 30/412 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                + +TF+E++++ GH  +  S+L+P +   ++FT SGM P      G+  P+ + +
Sbjct: 1   MRTDQLVSTFVEYYEERGHRRITGSTLLPPDGDPVLFTTSGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y   R++   + LLT+   +D
Sbjct: 61  VNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPRSLDWGYGLLTEGLGVD 115

Query: 122 QRRLYITVYDED------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              LY T +  D        + +LW+ + G+     + +T  DN+W     GPCGP SEI
Sbjct: 116 PGLLYATAFGGDGRTGPDTASVELWQGL-GVP----VELTVEDNWWPNDSAGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   GE  P   P      +R++E+WN V M   + +      LP+ ++DTG+GLER+A+
Sbjct: 171 FLWTGEGPPRSTP---TRDDRWVEVWNHVTMTHRRLDDGSLVPLPRRNVDTGLGLERLAS 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ +++ +  D+F    +       +     +  + R++ DHLRS+  ++ DG+ PAN 
Sbjct: 228 LLQGESSVFACDVFDPWRRLVPARWPL-----DEPSLRLVCDHLRSAVVVLGDGVRPANT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +        +  +    +  +   +     +L      +   L  E+
Sbjct: 283 GRGYVLRRLVRRVLTVLWRDDPSRGVGDLPVELVEHTLDHFRQDLR--PDDVLRMLIEEE 340

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            RF   L+RG     GVL+       L+ +    L+DTHGLP +++  +   
Sbjct: 341 HRFRGLLERGR----GVLAKPRFRGTLSEEDLHYLHDTHGLPRELVLSLREE 388


>gi|315506404|ref|YP_004085291.1| alanine--tRNA ligase [Micromonospora sp. L5]
 gi|315413023|gb|ADU11140.1| Alanine--tRNA ligase [Micromonospora sp. L5]
          Length = 397

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 129/420 (30%), Positives = 199/420 (47%), Gaps = 39/420 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TFL+ +Q++ H   P SSL+P     ++FT SGM P      G+  P  + +
Sbjct: 1   MTPDEITRTFLDHYQRHDHRRAPESSLVPPPGDPVLFTTSGMHPLTPYLLGRPHPGGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG  + H T F+MLG++S G Y    +++  ++LLT  F + 
Sbjct: 61  ANVQRCLRT----TDLDEVG-DSTHLTVFQMLGSWSLGDYDIATSLRWGFELLTDGFGIP 115

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             +L+ TV+  D+       A   W  + G+  + +      DN+WS   TGPCGP SEI
Sbjct: 116 AGKLHATVFGGDDRLGPDDTARDTWTGL-GVPVEAL----GEDNWWSNGPTGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P G P +     R++E+WN V M++ +        LP  SIDTGMGLER+  
Sbjct: 171 FVWTGDGPPTGTPSTDV---RWVEVWNHVQMRYHRHPDGRLTPLPHPSIDTGMGLERLEM 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VL+   + +  D  +  +        ++ E     + RV+ DHLRS+  ++ DG+ P N 
Sbjct: 228 VLRGDRSVFTGDGLRPWVDVVRDRWDLRGE-----DLRVVSDHLRSAVVVLGDGVRPGNT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQAKLLIEET--- 350
           GRGYV   + R       +L   +P   +  + P +  +    + +L    +   +    
Sbjct: 283 GRGYV---LRRLLRRALTVLWRDDPARTLDEMPPRVYADTLRRFRQLPDPSMRPVDVGSL 339

Query: 351 ---LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              L  E+ RF   L RG  L+D V         L       L+DTHGLP D++  +L  
Sbjct: 340 HTTLVDEERRFRGLLRRGRPLVDRV----RARGPLTERDYHWLHDTHGLPRDLVDGLLAE 395


>gi|182436874|ref|YP_001824593.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465390|dbj|BAG19910.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 388

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 124/412 (30%), Positives = 206/412 (50%), Gaps = 30/412 (7%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                + +TF+E++++ GH  +  S+L+P +   ++FT SGM P      G+  P+ + +
Sbjct: 1   MRTDQLVSTFVEYYEERGHRRITGSTLLPPDGDPVLFTTSGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y   R++   + LLT+   +D
Sbjct: 61  VNVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYGGPRSLDWGYGLLTEGLGVD 115

Query: 122 QRRLYITVYDED------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              LY T +  D        + +LW+ + G+     + +T  DN+W     GPCGP SEI
Sbjct: 116 PGLLYATAFGGDGRTGPDTASVELWQGL-GVP----VELTVEDNWWPNDSAGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   GE  P   P      +R++E+WN V M   + +      LP+ ++DTG+GLER+A+
Sbjct: 171 FLWTGEGPPRSTP---TRDDRWVEVWNHVTMTHRRLDDGSLVPLPRRNVDTGLGLERLAS 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           +LQ +++ +  D+F    +       +     +  + R++ DHLRS+  ++ DG+ PAN 
Sbjct: 228 LLQGESSVFACDVFDPWRRLVPARWPL-----DEPSLRLVCDHLRSAVVVLGDGVRPANT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355
           GRGYVLRR++RR +        +  +    +  +   +     +L      +   L  E+
Sbjct: 283 GRGYVLRRLVRRVLTVLWRDDPSRGVGDLPVELVEHTLDHFRQDLR--PDDVLRMLIEEE 340

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            RF   L+RG     GVL+       L+ +    L+DTHGLP +++  +   
Sbjct: 341 HRFRGLLERGR----GVLAKPRFRGTLSEEDLRYLHDTHGLPRELVLSLREE 388


>gi|218291266|ref|ZP_03495242.1| Alanine--tRNA ligase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238814|gb|EED06026.1| Alanine--tRNA ligase [Alicyclobacillus acidocaldarius LAA1]
          Length = 243

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/217 (47%), Positives = 140/217 (64%), Gaps = 10/217 (4%)

Query: 1   MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M +++   IR  F +FF + GH +LPS  L+P +DPTL++ N+GM P K  F G+E P  
Sbjct: 1   MKSLTGQEIRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEV 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
             +   QKC+R     ND++ VG T RH TFFEMLGNFSFG YFK  AI  AW+ LT+  
Sbjct: 61  PRIVDAQKCIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVL 116

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +LD  R+ +T++++D+EAF++W +  GL A +I R    DNFW + E GPCGPCSEIF+D
Sbjct: 117 ELDPDRISVTIHEDDDEAFEVWHRRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYD 174

Query: 179 QGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNK 213
           +GE    G P      + +R++EIWNLVF QF +   
Sbjct: 175 RGEAFGCGSPDCKPGCDCDRFLEIWNLVFTQFNKNAG 211


>gi|89266537|gb|ABD65560.1| alanyl-tRNA synthetase-like [Ictalurus punctatus]
          Length = 240

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/242 (42%), Positives = 148/242 (61%), Gaps = 19/242 (7%)

Query: 86  HHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAF 137
           HHTFFEMLG++SFG YFK+ A ++A +LLT+EF +   RLY T +        + D E  
Sbjct: 1   HHTFFEMLGSWSFGDYFKQLACKMALELLTQEFGIPLERLYFTYFGGHAEAGLECDNECK 60

Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
           ++W  + G++ ++I+     DNFW M +TGPCGPCSEI +D+           + +    
Sbjct: 61  QIWLDL-GVAEERILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGG-RDASHLVNMDDPNV 118

Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257
           +EIWNLVF+QF ++++ E   LPK SIDTGMGLER+ +VLQ   +NYD DLF    +A +
Sbjct: 119 LEIWNLVFIQFNRESETELKPLPKKSIDTGMGLERLVSVLQNTMSNYDTDLFIPYFEAIQ 178

Query: 258 QVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308
           + TG +               + +RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA
Sbjct: 179 KGTGARLYTGKVGSEDQDGIDMAYRVLADHARTITIALSDGGRPDNTGRGYVLRRILRRA 238

Query: 309 MC 310
           + 
Sbjct: 239 VR 240


>gi|293336582|ref|NP_001168420.1| hypothetical protein LOC100382190 [Zea mays]
 gi|223948147|gb|ACN28157.1| unknown [Zea mays]
          Length = 349

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 15/346 (4%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +++G +     +  ++D + R+    +H+ATHLL  AL +++GS  SQ GS +  D LRF
Sbjct: 2   IKQGSVEVGKEVDASVDAKLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDHLRF 61

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    +P++  EL +IE  +N  I     V T++M  +DA  +GA A+ G KY ++VRVV
Sbjct: 62  DFNFHRPLSEEELTTIEALINQWIGNAAHVETKVMALQDAKNAGAIAMFGEKYGEQVRVV 121

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V        S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D
Sbjct: 122 EVPG-----ISLELCGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFVDYVCARD 176

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCHKIA 792
             ++ L   LKV   +V  RVE I EE R        L+   A  K        +  +  
Sbjct: 177 NYMRRLCLSLKVKAEDVNSRVETILEELRATRNVASSLRSKIAVLKAASLASRATTVEPQ 236

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLD-RF 850
           +V  +   + +VD+  LKS  + L   ++    +++G S  + K S++   +  +++   
Sbjct: 237 NVRIVVENMGDVDADGLKSAAEYLIDTLKDPAAVILGSSPGDGKVSLVAAFSPAIVEMGL 296

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A       AK+ GGGGG G+P+ AQ+GG        A+    + +
Sbjct: 297 QAGKFVSGIAKLCGGGGG-GKPNFAQAGGRKPENLPDALEKARAEI 341


>gi|241998230|ref|XP_002433758.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215495517|gb|EEC05158.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 237

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 138/235 (58%), Gaps = 24/235 (10%)

Query: 1   MSNVSSIRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56
           M+  + IR  F++FF +   H  + SSS+IP +DPTL+FTN+GM  FK IF G   P   
Sbjct: 3   MTTAAEIRQQFIDFFVQKYDHLHVRSSSVIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSD 62

Query: 57  --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFK--------ERA 106
              Y+ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG +FK        +  
Sbjct: 63  AGKYKRVVDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDFFKANSSFSHSKEI 122

Query: 107 IQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTND 158
              AW+LLTK + L   RLY+T +  +E        E  ++W  + G+  ++I+  +  D
Sbjct: 123 CSWAWELLTKVYKLQGERLYVTYFGGNEAAGLEPDLECKQIWMNL-GVPEERILPGSMKD 181

Query: 159 NFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           NFW M ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ +   
Sbjct: 182 NFWEMGETGPCGPCSEIHYDRIGGRNASH-LVNADVPDVLEIWNLVFIQYNRCVD 235


>gi|302867187|ref|YP_003835824.1| alanine--tRNA ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302570046|gb|ADL46248.1| Alanine--tRNA ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 397

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 127/420 (30%), Positives = 196/420 (46%), Gaps = 39/420 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TFL+ +Q++ H   P SSL+P     ++FT SGM P      G+  P  + +
Sbjct: 1   MTPDEITRTFLDHYQRHDHRRAPESSLVPPPGDPVLFTTSGMHPLTPYLLGRPHPGGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG  + H T F+MLG++S G Y    +++  ++LLT  F + 
Sbjct: 61  ANVQRCLRT----TDLDEVG-DSTHLTVFQMLGSWSLGDYDIATSLRWGFELLTDGFGIP 115

Query: 122 QRRLYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
             +L+ TV+  D+       A   W  + G+  + +      DN+WS   TGPCGP SEI
Sbjct: 116 AGKLHATVFGGDDRLGPDDTARDTWTGL-GVPVEAL----GEDNWWSNGPTGPCGPDSEI 170

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F   G+  P G P +     R++E+WN V M++ +        LP  SIDTGMGLER+  
Sbjct: 171 FVWTGDGPPTGTPST---DARWVEVWNHVQMRYHRHPDGRLTPLPHSSIDTGMGLERLEM 227

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295
           VL+   + +  D  +  +        ++ E       RV+ DHLRS+  ++ DG+ P N 
Sbjct: 228 VLRGDRSVFTGDGLRPWVDVVRDRWDLRGEE-----LRVVSDHLRSAVVVLGDGVRPGNT 282

Query: 296 GRGYVLRRIMRRAMCYARLLGYTEP--LMMHLLPALCTEMGSAYPELIQAKLLIEET--- 350
           GRGYV   + R       +    +P   +  + P +  +    + ++        +    
Sbjct: 283 GRGYV---LRRLLRRALTVPWRDDPARTLDEMPPQVYADTLRRFRQVPDPSTRPVDVGSL 339

Query: 351 ---LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
              L  E+ RF   L RG  L+D V         L       L+DTHGLP D++  +L  
Sbjct: 340 HATLVDEERRFRGLLRRGRPLVDRV----RARGPLTERDYHWLHDTHGLPRDLVDGLLAE 395


>gi|262301331|gb|ACY43258.1| ala-tRNA synthetase [Chthamalus fragilis]
          Length = 235

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI FD+           + +    +EIWNLVF+QF +++      LPK  +
Sbjct: 1   DTGPCGPCTEIHFDRIGG-RDAANLVNMDDPNVVEIWNLVFIQFNRESDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ ++LQ K +NYD DLF+ + Q   ++TG +               + +RV+
Sbjct: 60  DCGLGLERLVSILQGKLSNYDTDLFQPIFQHITKLTGARPYTGKVGADDTDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P + GRGYVLRRI+RR + YA   LG    +   L+P +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDSVGRGYVLRRILRRGVRYATEKLGARRGVFAALVPTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL+RG  LL+  +  LG  + L GDVA++L
Sbjct: 180 DFFPELKKDPQTVMDIINEEEAQFLKTLNRGRTLLERTIGKLGDSKTLPGDVAWRL 235


>gi|262301347|gb|ACY43266.1| ala-tRNA synthetase [Euperipatoides rowelli]
          Length = 235

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++N     +LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRIGG-RDASHLVNMDDPNVLEIWNLVFIQFNRENDGVLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q KT+NYD D+F  L +A ++ TG +               + +RV+
Sbjct: 60  DCGMGFERLISVVQNKTSNYDTDVFMPLFEAIQKGTGARPYEGKVGSDDVDGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L  T      L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNATPNFFASLVNVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            A+PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG   IL GD+A++L
Sbjct: 180 DAFPELKKDPQMVMDIINEEESQFLKTLTRGRRLLERTICKLGTSSILPGDLAWRL 235


>gi|262301351|gb|ACY43268.1| ala-tRNA synthetase [Hanseniella sp. 'Han2']
          Length = 235

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ +++      LP+  I
Sbjct: 1   ETGPCGPCSEIHYDRIGG-RDASHLVNADVPDVLEIWNLVFIQYNRESDGSLRSLPRKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  L  A E+ TG +               + +RV+
Sbjct: 60  DCGMGLERLVSVIQNKPSNYDTDLFMPLFSAIEKGTGSRPYLGRVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAKPGFFSTLVDVVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           S +PEL +   ++++    E+  F KTL RG  LL+  ++ LG    L GDVA++L
Sbjct: 180 STFPELQKDPQMVKDIXNEEEAMFLKTLTRGQKLLERTIAKLGDTTTLPGDVAWRL 235


>gi|262301383|gb|ACY43284.1| ala-tRNA synthetase [Peripatus sp. 'Pep']
          Length = 235

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ ++N     +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRIGGRNAASF-VNMDDPDVLEIWNLVFIQYNRENDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q K +NYD D+F  L  A ++ TG +               + +RV+
Sbjct: 60  DCGMGFERLVSVIQNKNSNYDTDIFVPLFDAIQKGTGTRPYEGKVGNEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAPPGFFGSLVHVVVNLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            A+PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG   IL GDVA++L
Sbjct: 180 DAFPELKKDPEMVIDIINEEEVQFLKTLARGRRLLERTVDKLGNCNILPGDVAWRL 235


>gi|255528012|ref|ZP_05394849.1| Alanine--tRNA ligase [Clostridium carboxidivorans P7]
 gi|255508281|gb|EET84684.1| Alanine--tRNA ligase [Clostridium carboxidivorans P7]
          Length = 217

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 97/215 (45%), Positives = 133/215 (61%), Gaps = 7/215 (3%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           ++ +R  +L+FF+   H  LPS SL+P ND +L+  N+GM P K  FTG + P    VTT
Sbjct: 6   LNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPKTRVTT 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T+RH TFFEMLGNFSFG YFKE AI  AW+  T+   L + 
Sbjct: 66  CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVLKLPKD 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183
           +LY+T+Y +D+EA  LW K + +   +I R+  +DNFW     GPCGPCSEI FD+G   
Sbjct: 122 KLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHGI-GPCGPCSEIHFDRGNEK 180

Query: 184 PG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
                    + + +R +E WNLVF QF++      
Sbjct: 181 INTVEEFLKAADEDRVVEFWNLVFTQFDKDEDGNY 215


>gi|259015939|gb|ACV89252.1| alanyl-tRNA synthetase [Heliothis virescens]
          Length = 232

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/234 (39%), Positives = 132/234 (56%), Gaps = 19/234 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEM+GN+SFG YFK+     AW+LLT+ + L   RLY+T +        + D E 
Sbjct: 1   YHHTFFEMMGNWSFGDYFKKEICGWAWELLTEVYKLSGDRLYVTYFGGDASSGLEPDLEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            ++W K+ G+    I+  +  DNFW M ETGPCGPCSE+ +D+           + +   
Sbjct: 61  KEIWLKL-GVPESHILPGSMKDNFWEMGETGPCGPCSELHYDRIGG-RDAAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF ++      +LPK  ID G+GLER+ +V+Q K  NYD D F  + +A 
Sbjct: 119 VLEIWNLVFIQFNRETDGSLKLLPKKHIDCGLGLERLVSVIQNKRANYDTDFFMPIFKAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301
           E  TG +               + +RV+ DH R+ +  ++DG  P N GRGYV+
Sbjct: 179 EIGTGARPYSGKVGSDDVDGIDMAYRVLADHARTLTIALSDGGCPDNTGRGYVV 232


>gi|262301333|gb|ACY43259.1| ala-tRNA synthetase [Ctenolepisma lineata]
          Length = 236

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNQDDPDVLEIWNLVFIQFNRESDGTLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  + +A ++ TG                 + +RV+
Sbjct: 60  DCGMGLERIVSVIQNKRSNYDTDLFTPIFKAIQEGTGAPPYQGRVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    LG        L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGHPDNTGRGYVLRRILRRAVRYGTEKLGAKPGFFATLVSTVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKL 390
             +PE+      I + L  E+ +F KTL RG  LL+  ++ L GK  +L GDVA++L
Sbjct: 180 DTFPEVRNDPQGIMDILNEEESQFLKTLSRGRNLLNRTIAKLDGKSNVLPGDVAWRL 236


>gi|262301391|gb|ACY43288.1| ala-tRNA synthetase [Prokoenenia wheeleri]
          Length = 235

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 139/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI +D+           + +    +EIWNLVF+QF +++      LPK  +
Sbjct: 1   DTGPCGPCSEIHYDRIGG-RDAKELVNADVPDVLEIWNLVFIQFNRESDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K +NYD D+F  + +A ++ TG                 + +RV+
Sbjct: 60  DTGMGLERLVSVIQNKPSNYDTDIFVPIFEAIQKATGCPPYSGFVGSEDVSGVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P + GRGYVLRRI+RRA+ YA   L     L+  L+P + + +G
Sbjct: 120 ADHIRTLTIALSDGGHPDSTGRGYVLRRILRRAVRYATEKLNAKPGLLSSLIPIVISILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    +++ +  E+++F KTL RG  L +  ++ +G  + L GDVA++L
Sbjct: 180 ETFPELSKDPESVKDIIEEEEKQFLKTLSRGKRLFERTINKMGDQKYLPGDVAWRL 235


>gi|321442087|gb|ADW85458.1| ala-tRNA synthetase [Pollanisus sp. JCR-2011]
          Length = 235

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L  A ++ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPLFTAIQKGTGTRPYSGKVGTEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I++ +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 NVFPEIKKDPESIKQIINEEEIQFLKTLTRGRNLLNRTIDKLKNSKIVPGDLAWRL 235


>gi|321442081|gb|ADW85455.1| ala-tRNA synthetase [Lasiocampa quercus]
          Length = 235

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRIGDRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDGTLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIENGTGTRPYSGKVGTDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 HVFPEIKKDPKTIVQLINEEEVQFLKTLSRGRNLLNRTIEKLTNSKIIPGDIAWRL 235


>gi|2656129|gb|AAC46017.1| alanine tRNA synthetase [Pseudomonas aeruginosa PAO1]
          Length = 183

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/184 (57%), Positives = 131/184 (71%), Gaps = 10/184 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 1   MKS-AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW+ LT  K  
Sbjct: 60  ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGP
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGP 179

Query: 172 CSEI 175
           C+EI
Sbjct: 180 CTEI 183


>gi|259015949|gb|ACV89257.1| alanyl-tRNA synthetase [Austroneurorthus brunneipennis]
          Length = 231

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 95/233 (40%), Positives = 134/233 (57%), Gaps = 19/233 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK      AW+LLT+ F L   +LY+T +        + D+E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKREICTWAWELLTQVFKLPPDQLYVTYFGGHKESGLEPDDEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W  + G+    +I  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  RNIWIGL-GVPETHVIPGSMKDNFWEMGETGPCGPCSELHFDRI-GNREAAHLVNMDDPN 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+GLER+ +V+Q+K  NYD DLF+ L  A 
Sbjct: 119 VLEIWNLVFIQFNRESDASLKLLPKKHIDCGLGLERLVSVIQQKPANYDTDLFQPLFAAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
           ++ TG +    N          + +RV+ DH R+ +  ++DG  P N GRGYV
Sbjct: 179 QKGTGAREYRGNVGDDDQDGIDMAYRVLADHARTLTIALSDGGRPDNTGRGYV 231


>gi|262301371|gb|ACY43278.1| ala-tRNA synthetase [Lynceus sp. 'Lyn']
          Length = 235

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +++    +EIWNLVFM F ++      +LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAAHLVNQDDPDVLEIWNLVFMTFNRETDGSLKVLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q K +NYD DLFK + +A ++ T  +               + +RV+
Sbjct: 60  DCGMGFERLVSVIQNKRSNYDTDLFKPIFEAIQKGTNARPYTGKVGAEDPECIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +AD   P N GRGYVLRRI+RR + YA   L         L+P +   +G
Sbjct: 120 ADHARTITIALADHGRPDNVGRGYVLRRILRRGVRYATEKLNAKPGFFAGLVPTVIQILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +   +I + +  E+ +F KTL RG  LL+  ++ LG  + L GD+A++L
Sbjct: 180 PTFPEVSRDPQVIIDIINDEEAQFLKTLTRGRNLLNRTINKLGDQKTLPGDIAWRL 235


>gi|262301355|gb|ACY43270.1| ala-tRNA synthetase [Heterometrus spinifer]
          Length = 235

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 138/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRIGG-RDAKHLVNADVPDVLEIWNLVFIQFNRENDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           DTGMGLER+ +V+Q+K++NYD DLF  +  A ++ T         G+  +    + +RV+
Sbjct: 60  DTGMGLERLVSVIQDKSSNYDTDLFVPIFDAIQKATSARPYEGKVGVDDKDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   LG        L+P +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRAVRYATEKLGAKPGAFASLVPVVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL      I + +  E+ +F KTL RG  LL+  +  LG +++L G+VA++L
Sbjct: 180 EIFPELKTDPQTIIDIITDEEAQFLKTLSRGQRLLERTIDKLGSEKVLPGEVAWRL 235


>gi|321442069|gb|ADW85449.1| ala-tRNA synthetase [Ethmia eupostica]
          Length = 235

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGDRNAAH-LVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKKANYDTDLFMPLFKAIEKGTGVRAYSGKVGVEDIDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVYTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQTINEEEIQFLKTLSRGRNLLNRTIEKLNDSKTVPGDVAWRL 235


>gi|157813832|gb|ABV81661.1| putative AATS-ALA protein [Speleonectes tulumensis]
          Length = 235

 Score =  263 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF +        LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRDTSGTLNPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q+  +NYD DLF  L  A  + TG++               + +RV+
Sbjct: 60  DCGMGFERVVSVIQDLHSNYDTDLFIPLFDAIHKGTGVRCYTGKVGEEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLNAKPGFFATLVDVVIQVLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PEL +   ++++ +  E+ +F KTL RG  LL   +  LG  + L GDVA++L
Sbjct: 180 ATFPELKKDPEMLKDIINEEEAQFLKTLSRGRNLLQRTIRKLGDQKNLPGDVAWRL 235


>gi|319740489|gb|ADV60538.1| ala-tRNA synthetase [Bombyx mori]
          Length = 235

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGE-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGIDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL   +  L   + L GDVA++L
Sbjct: 180 DVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRL 235


>gi|262301323|gb|ACY43254.1| ala-tRNA synthetase [Abacion magnum]
          Length = 235

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI FD+        P  + +    +EIWNLVF+QF ++N     +LPK  +
Sbjct: 1   ETGPCGPCTEIHFDRIGE-RNAAPLVNADVPDVLEIWNLVFIQFNRENDGSLRVLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVI 275
           DTGMGLER+ +V+Q K +NYD DLF  +  A ++ TG K  G            + +RV+
Sbjct: 60  DTGMGLERVVSVIQCKQSNYDTDLFLPIFDAVQKATGTKPYGALVGAEDADGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L     L+  L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRGVRYAHEKLNAKPGLLADLVDVVVQILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PEL +    +++ +  E+ +F KTL RG  LL+  +  LG   +L GD+A++L
Sbjct: 180 TTFPELRKDPQSVKDVINEEETQFLKTLSRGQRLLERTVLKLGDQRVLPGDIAWRL 235


>gi|262301399|gb|ACY43292.1| ala-tRNA synthetase [Scolopendra polymorpha]
          Length = 235

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 17/239 (7%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           ETGPCGPCSEI +D+     GG   S   + +    +EIWNLVF+QF ++N  E  ILPK
Sbjct: 1   ETGPCGPCSEIHYDR----IGGRDASALVNIDDPDVLEIWNLVFIQFNRENDGELKILPK 56

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNH 272
             ID GMG ER+ +V+Q+KT+NYD D+F  +  A ++ TG +  G +          + +
Sbjct: 57  KHIDCGMGFERLTSVIQQKTSNYDTDIFVPIFDAIQKGTGQRPYGGSVGSADSDGIDMAY 116

Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331
           RV+ DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +  
Sbjct: 117 RVLADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAKSGFFSTLIDVVIE 176

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            +G  +PE+ +   ++++ +  E+ +F KTL RG  LL   ++ L    +L GD+A++L
Sbjct: 177 TLGDTFPEVKKDPQMVKDIINEEEIQFLKTLTRGQRLLQRTINKLNGQSVLPGDIAWRL 235


>gi|262301343|gb|ACY43264.1| ala-tRNA synthetase [Eurytemora affinis]
          Length = 236

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 10/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI +D+           + +    +EIWNLVFMQ+ ++  +    LP   I
Sbjct: 1   DTGPCGPCSEIHYDRIGGGRDAAHLVNMDDPDVLEIWNLVFMQYNREQDKSLKQLPNKHI 60

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q+K +NYD DLF    Q  +  TG++               + +RV+
Sbjct: 61  DCGMGFERLVSVVQDKRSNYDTDLFLPFFQHIQAGTGVRAYAGRVGAEDTDGIDMAYRVL 120

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG        L+  +   +G
Sbjct: 121 ADHARTLTIALSDGGRPDNVGRGYVLRRILRRGVRYASEKLGAKPGFFASLVHTVVQVLG 180

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LLD  +S L   + L GD+A++L
Sbjct: 181 ETFPEVKKDPQTVIDIINEEETQFLKTLSRGQKLLDRTISKLEGAKELPGDIAWRL 236


>gi|321442101|gb|ADW85465.1| ala-tRNA synthetase [Tineola bisselliella]
          Length = 235

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-RDVPHLVNMDDPDVLEIWNLVFIQFNRESDGSLRSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L  A ++ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKKANYDTDLFIPLFDAIQKGTGVRPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L   +     L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKKGFFGSLVNTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  + K +++ GDVA++L
Sbjct: 180 DVFPEIKRDPESIIQTINEEEIQFLKTLSRGRNLLNRTMEKINKTKVVPGDVAWRL 235


>gi|321442055|gb|ADW85442.1| ala-tRNA synthetase [Caloptilia bimaculatella]
          Length = 235

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD D F  L  A E+ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKKANYDTDFFIPLFNAIEKGTGSRPYTGKVGPDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVETLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + E +  E+ +F KTL RG  LL+  +  LG  + + GDVA++L
Sbjct: 180 DVFPEIKKNPEGVIEVINEEEIQFLKTLTRGRNLLNRTIDKLGNSKTVPGDVAWRL 235


>gi|321442093|gb|ADW85461.1| ala-tRNA synthetase [Pryeria sinica]
          Length = 235

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGNRNAAH-LVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K+ NYD D F  L +A E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKSANYDTDFFMPLFKAIEEGTGVRAYTGKVGANDVDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 DVFPEIKRDPKSIIQTINEEEIQFLKTLIRGRNLLNRTIEKLNDSKIVPGDLAWRL 235


>gi|321442075|gb|ADW85452.1| ala-tRNA synthetase [Eterusia aedea]
          Length = 235

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGNRNAAH-LVNMDDPDVLEIWNLVFIQYNRETDGSLKMLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD D F  L +A EQ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKKANYDTDFFVPLFKAIEQGTGVRPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  + + +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFAGLVNTVVSLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L    I+ GD+A++L
Sbjct: 180 DVFPEIKKDPESIMQTINDEEIQFLKTLTRGRNLLNRTIEKLNGSNIIPGDLAWRL 235


>gi|319740499|gb|ADV60543.1| ala-tRNA synthetase [Nataxa flavescens]
          Length = 235

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGTDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHNVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 NVFPEIKKDPESIIQLINEEEIQFLKTLCRGRNLLNRTMDKLDASKIIPGDVAWRL 235


>gi|321442083|gb|ADW85456.1| ala-tRNA synthetase [Melittia cucurbitae]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQYNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIESGTGVRPYSGKVGAEDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSTLIHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  LGK +I+ GDVA++L
Sbjct: 180 DVFPEITKDPNSIIQTINEEEVQFLKTLSRGRNLLNRTIEKLGKXKIIPGDVAWRL 235


>gi|319740503|gb|ADV60545.1| ala-tRNA synthetase [Oxytenis modestia]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGTLVNTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQVINEEEIQFLKTLTRGRNLLNRTIEKLDDSKIIPGDVAWRL 235


>gi|321442059|gb|ADW85444.1| ala-tRNA synthetase [Euclemensia bassettella]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +VLQ K  NYD DLF  L +A ++ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVLQNKRANYDTDLFVPLFEAIQKGTGARPYTGKVGAEDVDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLIYTVVQLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG  +++ GDVA++L
Sbjct: 180 BVFPEITKDPESIVQLINEEENQFLKTLSRGRNLLNRTIEKLGGSKVVPGDVAWRL 235


>gi|259015953|gb|ACV89259.1| alanyl-tRNA synthetase [Bittacidae sp. BMW-2009]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 94/237 (39%), Positives = 127/237 (53%), Gaps = 20/237 (8%)

Query: 99  GGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADK 150
           G YFK      AW+LLT  F L   RLY+T +        + DEE   +W K+ G+ A  
Sbjct: 1   GDYFKTEICSWAWELLTHVFKLPADRLYVTYFGGDAASGLEPDEECKNIWLKL-GVPATH 59

Query: 151 IIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ 210
           ++     DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +
Sbjct: 60  VLPGNMKDNFWEMGETGPCGPCSELHFDRIGG-RDVPELVNMDDPDVLEIWNLVFIQYNR 118

Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-- 268
           ++     +LPK  ID G+G ER+ +V+Q K  NYD DLF  L  A +  TG         
Sbjct: 119 ESDGSLKLLPKKHIDCGLGFERLVSVIQNKRANYDTDLFIPLFDAIQNGTGAPPYQGRVG 178

Query: 269 -------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGY 317
                   + +RV+ DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L  
Sbjct: 179 AEDSDGIDMAYRVLADHARTITIALADGGHPDNTGRGYVLRRILRRAVRYATEKLNA 235


>gi|262301401|gb|ACY43293.1| ala-tRNA synthetase [Stenochrus portoricensis]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   DTGPCGPCSEIHFDRLGG-RDAKNLVNADVPDVLEIWNLVFIQFNRENDGTLMSLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q  ++NYD DLF  +  A ++ TG+K               + +RV+
Sbjct: 60  DTGMGLERLVSVIQNHSSNYDTDLFVPIFDAIQKSTGVKSYSGKVGQEDIDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L     +   L+P +   +G
Sbjct: 120 ADHVRTLAIALSDGGRPDNTGRGYVLRRILRRAVRYTIEKLNGKPGVFASLVPVVVNLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL + +  + + +  E+ +F KTL RG  LL   ++ LG  +IL GDVA++L
Sbjct: 180 DIFPELKKDQQTVMDIINDEESQFLKTLSRGHRLLQRTINKLGDQKILPGDVAWRL 235


>gi|262301377|gb|ACY43281.1| ala-tRNA synthetase [Neogonodactylus oerstedii]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNREPDSSLRLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D GMGLER+ +++Q K +NYD D+F  +  A +++T         G        + +RV+
Sbjct: 60  DCGMGLERVVSIMQNKRSNYDTDMFTPIFDAIQRLTNAPSYQGRVGKDDVNGLDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG +P N+GRGYVLRRI+RR + YA   LG    +   L+  +   + 
Sbjct: 120 ADHIRTITIALSDGGMPDNQGRGYVLRRILRRGVRYASEKLGAKPGVFASLVDVVIELLK 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I+  +  E+ +F KTL+RG  LL+  +S L    ++ GDVA++L
Sbjct: 180 GTFPEVTKDPEFIKSVINEEETQFLKTLERGRKLLERTISRLDGTTVIPGDVAWRL 235


>gi|319740493|gb|ADV60540.1| ala-tRNA synthetase [Lemonia dumi]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRETDGTLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +  E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFETIEKGTGIRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTITIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNXKPGFFGSLVYTVVNLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  LG  +I+ GD+A++L
Sbjct: 180 DVFPEIKKDPDSIVQTINEEEVQFLKTLSRGRNLLNRTIEKLGDSKIIPGDIAWRL 235


>gi|157813824|gb|ABV81657.1| putative AATS-ALA protein [Limulus polyphemus]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 140/236 (59%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N     +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRIGD-RDAKHLVNADVPDVLEIWNLVFIQFNRENDGTLRMLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q+K++NYD DLF  +  A ++VTG +               + +RV+
Sbjct: 60  DTGMGLERLVSVIQQKSSNYDTDLFVPIFDAIQKVTGTRPYQGKVGSDDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + +A   L     +   L+P +   +G
Sbjct: 120 ADHVRTLTVSLSDGGRPDNTGRGYVLRRILRRGVRFATEKLNAKPGVFAGLVPVVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +   ++ + +  E+ +F KTL RG  LL+  ++ LG  + L GDVA++L
Sbjct: 180 DVFPELRKDPQMVMDIINEEESQFLKTLTRGHRLLERTINKLGNVKTLPGDVAWRL 235


>gi|321442053|gb|ADW85441.1| ala-tRNA synthetase [Axia margarita]
          Length = 235

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEIGTGVRPYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG  +I+ GDVA++L
Sbjct: 180 EVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLGXSKIIPGDVAWRL 235


>gi|319740495|gb|ADV60541.1| ala-tRNA synthetase [Malacosoma americanum]
          Length = 235

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDGSLKFLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  +G++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEIGSGIRPYTGXVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 HVFPEIKKDPKSIVQLINEEEIQFLKTLSRGRNLLNRTIEKLSNSKIIPGDIAWRL 235


>gi|319740513|gb|ADV60550.1| ala-tRNA synthetase [Saturnia naessigi]
          Length = 235

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEINKDPDSIIQLINEEEIQFLKTLSRGRNLLNRTIEKLNNSKTIPGDVAWRL 235


>gi|319740487|gb|ADV60537.1| ala-tRNA synthetase [Apatelodes torrefacta]
          Length = 235

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGARPYSGKVGAEDIDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYSTEKLNGKPGFFSSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L    I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIVHIINDEEIQFLKTLTRGRNLLNRTIEKLNSSTIIPGDVAWRL 235


>gi|262301393|gb|ACY43289.1| ala-tRNA synthetase [Scutigera coleoptrata]
          Length = 235

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRVGG-RNARDLVNMDDPDVLEIWNLVFIQFNRETDGSLRSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+G ER+ +V+Q K++NYD D F  L  A ++ TG +               + +RV+
Sbjct: 60  DCGLGFERIVSVIQNKSSNYDTDCFMPLFDAVQKGTGARPYEGKIGADDKDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLSAKAGFFSTLVDVVVQNLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +   L+++ +  E+ +F KTL RG  LL+  +S LG +++L GDVA++L
Sbjct: 180 EMFPEVTKDPQLVKDIINEEEVQFLKTLSRGHRLLERTISKLGSEKVLPGDVAWRL 235


>gi|157813840|gb|ABV81665.1| putative AATS-ALA protein [Cydia pomonella]
          Length = 235

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDLFMPLFKAIEVGTGSRPYTGKVGDEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVHTVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +++ +  E+ +F KTL RG  LL+  +  LG    + G+VA++L
Sbjct: 180 DVFPEIKKDPESVKQIINEEEVQFLKTLTRGRNLLNRTIEKLGHSNSIPGEVAWRL 235


>gi|157813838|gb|ABV81664.1| putative AATS-ALA protein [Antheraea paukstadtorum]
          Length = 235

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFXPIFKAIENGTGARPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPXFFASLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRNIEKLNNSKTIPGDVAWRL 235


>gi|321442041|gb|ADW85435.1| ala-tRNA synthetase [Apha aequalis]
          Length = 235

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGNRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDGSLKQLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKSIESGTGTRPYSGKVGTDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGTLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  LG  +I+ GDVA++L
Sbjct: 180 DIFPEIKKDPDSIVLLINEEEIQFLKTLSRGRNLLNRTMEKLGGSKIIPGDVAWRL 235


>gi|319740507|gb|ADV60547.1| ala-tRNA synthetase [Prismosticta fenestrata]
          Length = 235

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIEHGTGVRPYSGKVXADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPEFFGSLVHTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L     + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLDSSTTIPGDVAWRL 235


>gi|321442105|gb|ADW85467.1| ala-tRNA synthetase [Tolype notialis]
          Length = 235

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRIGDRNAAH-LVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEIGTGIRPYSGKVGIDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLIYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 NIFPEIKKDPDSIVQLINEEELQFLKTLLRGRNLLNRTIEKLTNTKTIPGDIAWRL 235


>gi|262301363|gb|ACY43274.1| ala-tRNA synthetase [Limnadia lenticularis]
          Length = 235

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           +++    +EIWNLVFM + ++      +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDRIGG-RDAAHLVNQDDPDVLEIWNLVFMTYNRETDGSLKVLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q+K +NYD DLF  +  A ++ T  +               + +RV+
Sbjct: 60  DCGMGLERLVSVIQDKRSNYDTDLFVPIFDAIQKGTNARPYAGKVGVEDRDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+P +C  +G
Sbjct: 120 ADHARTLTISLSDGGRPDNVGRGYVLRRILRRGVRYATEKLSAKPGFFASLVPTVCQVLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           S +PE+ +   L+ + +  E+ +F KTL RG  LL+  ++ L     L GDVA++L
Sbjct: 180 STFPEVNRDPQLVMDIINDEEAQFLKTLSRGRNLLERTVAKLEGQTTLPGDVAWRL 235


>gi|321442089|gb|ADW85459.1| ala-tRNA synthetase [Poecilocampa populi]
          Length = 235

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDSTLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIENGTGTRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPRFFASLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 NVFPEIKKDPKSIIQLINEEEVQFLKTLSRGRNLLNRTIEKLNNSKIIPGDVAWRL 235


>gi|321442091|gb|ADW85460.1| ala-tRNA synthetase [Prionoxystus robiniae]
          Length = 235

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q +  NYD DLF  L +A E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNRRANYDTDLFVPLFKAIERGTGVRPYSGKVGPEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLIHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L + + + G+VA++L
Sbjct: 180 DVFPEIKKDPESIIQTINEEEIQFLKTLSRGRNLLNRTIEKLSESKTVPGEVAWRL 235


>gi|321442057|gb|ADW85443.1| ala-tRNA synthetase [Chelepteryx collesi]
          Length = 235

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGE-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGTDDMDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRGVRYASEKLNAKPGFFGSLVYKVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIRKDPESIIQLINEEEIQFLKTLCRGRNLLNRTIDKLDTSKTIPGDIAWRL 235


>gi|319740497|gb|ADV60542.1| ala-tRNA synthetase [Mirina christophi]
          Length = 235

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  +  + E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFASIENGTGVRPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPDSIIQLIDEEEIQFLKTLCRGRNLLNRTIEKLDNSKTIPGDIAWRL 235


>gi|262301335|gb|ACY43260.1| ala-tRNA synthetase [Carcinoscorpius rotundicauda]
          Length = 235

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 140/236 (59%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N     +LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRIGG-RDAKHLVNADVPDVLEIWNLVFIQFNRENDGTLKMLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K++NYD DLF  + +A ++VTG +               + +RV+
Sbjct: 60  DTGMGLERLVSVIQGKSSNYDTDLFVPIFEAIQKVTGSRPYEGKIGSHDEGGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P + GRGYVLRRI+RR + +A   L     +   ++P +   +G
Sbjct: 120 ADHVRTLTVSLSDGGRPDSTGRGYVLRRILRRGVRFATEKLNAKPGVFAGIVPTVVNILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +   ++ + +  E+ +F KTL RG  LL+  +  LG  ++L GDVA++L
Sbjct: 180 DVFPELRKDPQMVMDIINEEESQFLKTLTRGRRLLERTILKLGNIKMLPGDVAWRL 235


>gi|319740491|gb|ADV60539.1| ala-tRNA synthetase [Endromis versicolora]
          Length = 235

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETDGLLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLDSSKTIPGDIAWRL 235


>gi|319740515|gb|ADV60551.1| ala-tRNA synthetase [Carthaea saturnioides]
          Length = 235

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFESIENGTGVRPYTGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTMEKLDDSKTIPGDVAWRL 235


>gi|321442103|gb|ADW85466.1| ala-tRNA synthetase [Tinea columbariella]
          Length = 235

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REVPHLVNMDDPDVLEIWNLVFIQFNRESDGSLRSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L  A ++ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKNANYDTDLFVPLFDAIQKGTGVRSYSGKVGAEDVDSIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVNTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  + K +++ GDVA++L
Sbjct: 180 DVFPEIKRDPESIIQTINEEEIQFLKTLIRGRNLLNRTMEKIDKTKVVPGDVAWRL 235


>gi|259015933|gb|ACV89249.1| alanyl-tRNA synthetase [Kempynus sp. BMW-2009]
          Length = 226

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/228 (38%), Positives = 127/228 (55%), Gaps = 19/228 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK+     AW+ LT+ F L   +LY+T +        + DEE 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKQEICTWAWEFLTEVFHLPPDQLYVTYFGGHPASGLEPDEEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W K+ G+    ++  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KNIWIKL-GVPESHVLPGSMKDNFWEMGETGPCGPCSELHFDRI-GNRDVPHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+G ER+ +V+Q K  NYD DLF  L  A 
Sbjct: 119 VLEIWNLVFIQFNRESDSSLKLLPKKHIDCGLGFERLVSVIQGKRANYDTDLFMPLFAAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANE 295
           ++ TG++               + +RV+ DH R+ +  ++DG  P N 
Sbjct: 179 QKGTGIREYSGQVGDADSDGIDMAYRVLADHARTLTISLSDGGRPDNT 226


>gi|262301395|gb|ACY43290.1| ala-tRNA synthetase [Scutigerella sp. 'Scu3']
          Length = 235

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAKHLVNADVPDVLEIWNLVFIQFNREADGSLLPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q K++NYD DLF+ L +A E+ TG +               + +RV+
Sbjct: 60  DCGMGLERLVSVVQNKSSNYDTDLFQALFEAVEKGTGSRPYTGKVGPEDADGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L      +  L+  + T +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAKPGFIASLVDVVVTLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    +++ +  E+ +F KTL RG  LL+  ++ +G    L GDVA++L
Sbjct: 180 DTFPELNKDPQTVKDIINDEEVQFLKTLSRGQKLLERTIAKMGDTRTLPGDVAWRL 235


>gi|321442071|gb|ADW85450.1| ala-tRNA synthetase [Emmelina monodactyla]
          Length = 235

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GNRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD DLF  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKRANYDTDLFMPLFKAIEVGTGARPYSGKVGADDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYACEKLNAKSGFFGTLVYKVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 180 DVFPEIKKDPEAVIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNVKVIPGDVAWRL 235


>gi|51102328|gb|AAT95877.1| alanyl-tRNA synthetase [Entamoeba moshkovskii]
          Length = 606

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 153/695 (22%), Positives = 252/695 (36%), Gaps = 149/695 (21%)

Query: 49  IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFK 103
             TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G   F       YFK
Sbjct: 2   CVTGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQVFNSPQKYVYFK 57

Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163
           E  +      LTKE +++   +                             T  ++ W  
Sbjct: 58  EECVDYNLRWLTKELEINVDDI-----------------------------TLIEDVWCG 88

Query: 164 AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFILPK 221
              G  GP  E+F                   + +E+ N+VF Q++  +  K E   L  
Sbjct: 89  G--GNLGPSIEMFV------------------KGLEVGNMVFTQYKILDFVKGEFEPLKH 128

Query: 222 MSIDTGMGLERMATVLQEKTNNY----------------------------------DID 247
             ID G+GLER+  ++     +Y                                  ++D
Sbjct: 129 QVIDVGIGLERIPWLINGTPTSYLEAFPGAVKYLQSKLEVTLESEVISKFAPFCCLLNLD 188

Query: 248 LFKHLIQASEQVTG---------MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
             K + +A   +           ++       +  +I DH R+    I DG LP+  G G
Sbjct: 189 ECKDVNKAWADIAKECGVENREILQTAIQPTRDLYIIADHSRTMLIAIYDGALPSAVGGG 248

Query: 299 YVLRRIMRRAMCYARLLGYTEPL-----MMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353
             LR I+RR        G+ E L     +M L      ++   Y    + K    + +  
Sbjct: 249 ANLRNIVRRMFSILHKNGWWEKLGGMDGLMELFEWHKRDLEKLYGAFDEYKSF-RKIIEM 307

Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413
           E +R+  T       +  +L    K  +L  D       ++GL  D + +I         
Sbjct: 308 EYQRWCTTDLESQQKVQALLK--KKKGVLVVDDWIVAMKSYGLSPDKISEI--------- 356

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
                                       + ++  L E       +    L  +   +E  
Sbjct: 357 ----------------------SKLPVPDNLYTKLAELEDQRVKMLPTELYETADFQETI 394

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           ++       DL    S I+  + +  E  +   +G    V+  ++ FY   GGQ  DTG 
Sbjct: 395 ELFYDNG--DLREFNSEIITVLEKVDEKCK--PTGIHNIVILKESAFYPIGGGQDNDTGK 450

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSATHL 592
              DGI   +T V+K  + I  H     +        S+   ID Q R QL  +H+ATH+
Sbjct: 451 MKIDGITYDVTYVEKVGKCILHHLDTDLKNWNDLKGKSVTAYIDDQRRNQLRSHHTATHI 510

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +H A   +LG H+ QNG+  T +    D+TH   IT  E   IE   N+++ +NL +   
Sbjct: 511 IHQAAHQVLGPHIWQNGAKKTVEEAHLDITHFASITREEENEIEKLANEMVRKNLKINKF 570

Query: 653 IMNREDAIASGAAALL--GTKYNDRVRVVSVEYED 685
           ++++E+A      +L   G    + VR+V +   D
Sbjct: 571 VLSKEEAEKKYGFSLYQGGVVAGNTVRIVDIAGFD 605


>gi|321442073|gb|ADW85451.1| ala-tRNA synthetase [Fulgoraecia exigua]
          Length = 235

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REAAHLVNMDDPDVLEIWNLVFIQYNRETDGSLKMLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D+F  L +A E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDIFMPLFEAIEKGTGVRAYTGKVGKEDNDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L      +  L+  +   +G
Sbjct: 120 ADHVRTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFLGSLVFKVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +   +  E+ +F KTL RG  LL+  +  LG  +I+ G+VA++L
Sbjct: 180 EVFPEIKRDPYNVINIINEEETQFLKTLTRGRGLLNRTIEKLGDSKIIPGEVAWRL 235


>gi|262301369|gb|ACY43277.1| ala-tRNA synthetase [Loxothylacus texanus]
          Length = 235

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI FD+ E         +++    +EIWNLVF+QF +++      LP+  +
Sbjct: 1   DTGPCGPCTEIHFDR-EGGRNAAHLVNQDDPNVVEIWNLVFIQFNRESDGSLRTLPRQHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ ++LQ K +NYD DLF+ +     Q+TG++               + +RV+
Sbjct: 60  DTGMGLERLVSILQNKMSNYDTDLFQPIFSKITQLTGVRQYTGKVGVEDKDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA         +   L+P +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDNVGRGYVLRRILRRGVRYASEKFAAKPGVFAALVPTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  +S L     + GDV ++L
Sbjct: 180 DTFPELRKDPDTVMDIINEEEVQFLKTLKRGRSLLERAISRLANTTTVPGDVVWRL 235


>gi|319740505|gb|ADV60546.1| ala-tRNA synthetase [Phiditia sp. JCR-2009]
          Length = 235

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKSIENGTGVRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+ ++   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLIYSVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTIEKLEBSKIIPGDVAWRL 235


>gi|319740509|gb|ADV60548.1| ala-tRNA synthetase [Paonias myops]
          Length = 235

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKSIEIGTGARPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LL+  +  L K +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESLVQLINEEEIQFLKTLTRGRNLLNRTMEKLDKSKIIPGDVAWRL 235


>gi|262301381|gb|ACY43283.1| ala-tRNA synthetase [Periplaneta americana]
          Length = 235

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-RDAAHLVNQDDPDVLEIWNLVFIQFNRESDGSLRSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K +NYD DLF  L  A ++ TG                 + +RV+
Sbjct: 60  DCGLGLERLVSVIQQKRSNYDTDLFMPLFDAIQKGTGAPPYKGRVGEEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTISLSDGGRPDNTGRGYVLRRILRRGVRYATEKLNAKPGFFASLVNTVVXILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +  L + + +  E+ +F KTL RG  LL+  +  LG  + + GDVA++L
Sbjct: 180 DTFPEVKKDPLSVMDIINEEEAQFLKTLSRGRNLLNRTILKLGDSKTVPGDVAWRL 235


>gi|319740485|gb|ADV60536.1| ala-tRNA synthetase [Acanthobrahmaea europaea]
          Length = 235

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGDRNAAH-LVNMDDPDVLEIWNLVFIQFNRETGGALKPLPKRHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A ++ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFEAIQKGTGIRPYSGKVGADDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYAFEKLNAKSGFFGSLVYTVVKLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GD+A++L
Sbjct: 180 DVFPEIKKDPDSIVQMINEEEVQFLKTLSRGRNLLNRTIEKLDDSKIIPGDIAWRL 235


>gi|319740511|gb|ADV60549.1| ala-tRNA synthetase [Quentalia chromana]
          Length = 235

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRETDASLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIENGTGVRPYSGKVGADDSDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRGVRYASEKLNAKPGFFGTLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I +T+  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQTINEEEIQFLKTLSRGRSLLNRTIEKLDNSKTIPGDVAWRL 235


>gi|321442047|gb|ADW85438.1| ala-tRNA synthetase [Amauta cacica]
          Length = 235

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPLFKAIEDGTGVRSYTGKVGVEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPEFFSSLVNTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPESIIQIINEEEVQFLKTLSRGRNLLNRTMDKLNDSKTVPGDIAWRL 235


>gi|319740501|gb|ADV60544.1| ala-tRNA synthetase [Oberthueria formosibia]
          Length = 235

 Score =  258 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKQLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L ++ E  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKSIEIGTGVRPYSGKVGPDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 GVFPEIKKDPESIIQLINEEEIQFLKTLSRGRSLLNRTMEKLDGSKTIPGDIAWRL 235


>gi|321442085|gb|ADW85457.1| ala-tRNA synthetase [Platynota idaeusalis]
          Length = 235

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+Q+ +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQYNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A +  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPIFEAIQTGTGSRPYSGKVGDDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +  + I +T+  E+ +F KTL RG  LL+  +  LG  + + G+VA++L
Sbjct: 180 DVFPEIKKDPVSIIQTINEEEIQFLKTLTRGRNLLNRTIEKLGDSKTVPGEVAWRL 235


>gi|262301349|gb|ACY43267.1| ala-tRNA synthetase [Eurypauropus spinosus]
          Length = 235

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPC+EI +D+        P  + +    +EIWNLVF+QF +++      LPK  +
Sbjct: 1   DQGPCGPCTEIHYDRI-GXRDAAPLVNADVPDVLEIWNLVFIQFNRESDGSLRSLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           DTGMG ER+ +V+Q K +NYD D+F  +  A ++ TG +               + +RV+
Sbjct: 60  DTGMGFERLVSVIQNKMSNYDTDVFTPIFDAIQKGTGCRPYSGLVGADDKDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P + GRGYV+RRI+RRA+ YA   L         L+  +   + 
Sbjct: 120 ADHARTLTVTLADGGHPDSVGRGYVMRRILRRAVRYAHEKLNAKPGFFATLVDIVLQLLA 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I++T+  E+ +F KTL RG  LL+  +  LG      GDVA++L
Sbjct: 180 ETFPELAKDPQSIKDTINEEESQFLKTLSRGRKLLERTIVKLGNTTTFPGDVAWRL 235


>gi|321442107|gb|ADW85468.1| ala-tRNA synthetase [Trogoptera salvita]
          Length = 235

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E  TGM+               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDLFMPLFKAIEIGTGMRPYSGKVGDEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLIYTVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +   +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEIKKDPESLIHLINEEEIQFLKTLSRGRNLLNRTMEKLNDSKTIPGDVAWRL 235


>gi|262301373|gb|ACY43279.1| ala-tRNA synthetase [Hexagenia limbata]
          Length = 236

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++  E  +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRESDGELRLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D G+G ER+ +V+Q K +NYD D+F  +  A ++ TG                 + +RV+
Sbjct: 60  DCGLGYERLVSVIQNKRSNYDTDVFVPIFDAIQKGTGCPPYQGRVGAEDKDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    LG        L+  +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAVRYGTEKLGAKPGFFATLVHVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG-KDEILNGDVAFKL 390
             +PE+ +    + E +  E+++F KTL RG  LL+  +  LG + ++L G++A++L
Sbjct: 180 DTFPEVRRDPTAVVEVINEEEQQFLKTLARGRSLLNRTVERLGSETKVLPGEIAWRL 236


>gi|262301325|gb|ACY43255.1| ala-tRNA synthetase [Argulus sp. Arg2]
          Length = 235

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRIGGRNAAA-LVNQDDPDVLEIWNLVFIQFNRESDGSLHLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K +NYD D F  L +A +Q TG +               + +RVI
Sbjct: 60  DCGLGLERLVSVIQKKXSNYDTDAFTPLFKAIQQKTGCREYQGKVGVDDIGGIDMAYRVI 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L      +  L+P +   +G
Sbjct: 120 ADHVRTLTIALADGGRPDNSGRGYVLRRILRRAVRYATEKLNAKSGTLSSLIPVVVESLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I+  +  E+ +F KTL RG  LL   +S LGK  +  GD+A++L
Sbjct: 180 DVFPEIKRGVDDIKNIIDEEETQFLKTLSRGHRLLSAQVSKLGKGSLFPGDIAWRL 235


>gi|262301361|gb|ACY43273.1| ala-tRNA synthetase [Libinia emarginata]
          Length = 237

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 13/238 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +E+    +EIWNLVFMQF ++       LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRI-GNRDAAHLVNEDDPDVLEIWNLVFMQFNREADNTLRTLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D GMGLER+ ++LQ KT+NYD DLF  + +A ++VTG +               + +RV+
Sbjct: 60  DCGMGLERLVSILQGKTSNYDTDLFTPIFEAIQKVTGCQPYKGRVGAADTDGVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DHLR+ +  ++DG +P N GRGYVLRRI+RRA+ Y A  LG    ++  L+  +   +G
Sbjct: 120 ADHLRTLTVALSDGGMPDNTGRGYVLRRILRRAVRYAAEKLGMKPGVLSSLIGVVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390
            A+PE+ +   +I + +  E+ +F +TL+RG  +L+  +  LGK    ++ G+VA++L
Sbjct: 180 KAFPEVTRDPQMICDVIDEEERQFLRTLERGHRVLERAVHRLGKAGGGMVPGEVAWRL 237


>gi|262301403|gb|ACY43294.1| ala-tRNA synthetase [Tomocerus sp. 'Tom2']
          Length = 236

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +E+WNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRIGG-RNAASLVNQDDPDVLEVWNLVFIQFNRESDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  + +A  Q TG +               + +RV+
Sbjct: 60  DCGMGLERIVSVIQGKRSNYDTDLFVPIFEAIRQATGARPYTGKVGAEDTDGLDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L     L   L+  +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGVRYAIEKLHGKPGLFARLVNVVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL+RG  LL+  +S L   E  L GDVA+++
Sbjct: 180 DTFPEVRKDPQSVMDVINEEEAQFLKTLNRGRNLLERTVSKLTSGETTLPGDVAWRM 236


>gi|262301339|gb|ACY43262.1| ala-tRNA synthetase [Dinothrombium pandorae]
          Length = 234

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 132/236 (55%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    IEIWNLVF+Q+ ++N     +LPK  I
Sbjct: 1   ETGPCGPCSEIHYDKIGD-RDAAYLVNMDDPDVIEIWNLVFIQYNRENDGSLSLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +V+Q K +NYD D+F+   +A +Q+T  +               + +RV+
Sbjct: 60  DTGMGFERLTSVIQGKPSNYDTDIFQPFFEAIQQLTNSREYSGKVGKDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA             L+P +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNVGRGYVLRRILRRAVRYATEKFNAKPGTFASLVPVVVNTLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + EL +    I + +  E+ +F KTL RG  LL+  +S    + IL GD+A++L
Sbjct: 180 DVFLELKKDPQTIIDIINEEEAQFLKTLSRGRKLLERAISKTDSN-ILPGDIAWRL 234


>gi|157813820|gb|ABV81655.1| putative AATS-ALA protein [Forficula auricularia]
          Length = 236

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/237 (37%), Positives = 133/237 (56%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           +++    +EIWNLVF+Q+ +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REVPHLVNQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D GMG ER+ +V+QEK +NYD D+F  L +A ++ TG +               + +RV+
Sbjct: 60  DCGMGFERLVSVIQEKRSNYDTDIFTPLFEAIQKGTGSRPYQGLLGSEDSEGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ +    L         L   +   +G
Sbjct: 120 ADHARTLTIALADGGHPDNTGRGYVLRRILRRAVRFGTEKLNAKPGFFASLSDTVANLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKL 390
             +PE+++    I++ +  E+E+F KTL RG  LL   +S L    + + GDVA++L
Sbjct: 180 DQFPEVLKDPQSIKDIINEEEEQFLKTLSRGRNLLHRTISKLPADSKTIPGDVAWRL 236


>gi|321442051|gb|ADW85440.1| ala-tRNA synthetase [Atteva punctella]
          Length = 235

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+  D+           + +    +EIWNLVF+Q+ +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHXDRIGG-REAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K  NYD D F  + +  E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQDKRANYDTDFFMPIFKVIEKGTGVRPYMGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQLINEEEIQFLKTLSRGRNLLNRTMDKLNDSKIVPGDVAWRL 235


>gi|213420684|ref|ZP_03353750.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 262

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 110/294 (37%), Positives = 163/294 (55%), Gaps = 32/294 (10%)

Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392
           MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+LYD
Sbjct: 1   MGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRLYD 59

Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
           T+G P+D+  D+   R +  +D   F  A+EEQR RAR  S G G+     I        
Sbjct: 60  TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 112

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512
            A++F GYD L                        ++  V A+   G+ VE   +GQ+  
Sbjct: 113 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVEAINAGQEAV 149

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV DQTPFYAE+GGQ+GD G   G G    + D QK  + I  H   +  G L+   ++ 
Sbjct: 150 VVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQAI-GHLGKLSAGALKVGDAVQ 208

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             +D   R ++ +NHSATHL+H AL  +LG+HV+Q GS ++   LRFD +H++ 
Sbjct: 209 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEA 262


>gi|262301357|gb|ACY43271.1| ala-tRNA synthetase [Idiogaryops pumilis]
          Length = 235

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+Q+ ++      +LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRIGG-RNVAHLVNADVPEVLEIWNLVFIQYNRETDGSLRLLPKQHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +V+Q+K +NYD D+F  + +A ++ TG++               + +RV+
Sbjct: 60  DTGMGFERLVSVIQDKPSNYDTDIFMPIFEAIQKATGVRPYTGKVGKDDADGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   +         L+P +   +G
Sbjct: 120 ADHSRTLTIALSDGGRPDNIGRGYVLRRILRRAVRYATEKMNAAPGTFARLVPVVVGILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  +  LG  + L G VA++L
Sbjct: 180 DVFPELKKDPEGVMDIINEEENQFLKTLSRGRRLLEKTVGKLGDQKFLPGXVAWRL 235


>gi|262301327|gb|ACY43256.1| ala-tRNA synthetase [Artemia salina]
          Length = 235

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +++    +EIWNLVFM + +++      LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAADLVNKDDPDVLEIWNLVFMTYNRESDGTLKYLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D G+GLER+ +V+QEK +NYD DLF  L  A ++ T         G++ +    + +RV+
Sbjct: 60  DCGLGLERLVSVVQEKRSNYDTDLFVPLFDAIQKGTSMQAYSGKVGVEDKEGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHIRTLTIALSDGGRPDNVGRGYVLRRILRRGVRYATEKLKAKPGFFGSLVHVVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + E+ +    I   +  E+ +F KTL RG  LL+  ++ LG  ++L G++A++L
Sbjct: 180 DTFSEIKKDPETIISIIDEEERQFLKTLSRGKSLLERTVAKLGDSKVLPGNIAWRL 235


>gi|262301329|gb|ACY43257.1| ala-tRNA synthetase [Armadillidium vulgare]
          Length = 235

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +EIWNLVF+QF ++N      LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRIGNRNAST-LVNQDDPNVLEIWNLVFIQFNRENDGSLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ ++LQ K +NYD DLF  L  A +  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSILQNKNSNYDTDLFTPLFNAIQNKTGIRPYTGKVGDEDIDGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG LP N GRGYVLRRI+RR + + A  L     +   L+  +   + 
Sbjct: 120 ADHARTLTIXLSDGGLPDNTGRGYVLRRILRRGVRFAAEKLKAKPSIFASLIDDVVITLK 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I++T+  E+++F KTLDRG  LL+  +  LG    + GDVA++L
Sbjct: 180 DIFPEVSKDVDYIKDTINEEEQQFLKTLDRGHKLLERTIHKLGXSNNIPGDVAWRL 235


>gi|262301319|gb|ACY43252.1| ala-tRNA synthetase [Aphonopelma chalcodes]
          Length = 234

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 138/236 (58%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK  +
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDASDLVNADIPDVLEIWNLVFIQFNREGDGFLRSLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNHRVI 275
           DTGMGLER+ +V+Q K++NYD DLF  + +A +++TG   Y G           + +RV+
Sbjct: 60  DTGMGLERLVSVIQNKSSNYDTDLFMPIFEAIQKLTGAPSYTGKVGAEDVDGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P + GRGYVLRRI+RRA+ Y+   LG    +   L+P + + +G
Sbjct: 120 ADHARTLTVALADGGRPDSTGRGYVLRRILRRAVRYSTEKLGGKPGMFATLVPVVVSILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + EL +    I + L  E+++F KTL RG  LL   +  L   ++L G+VA++L
Sbjct: 180 DIFTELKKDPQTIMDILNDEEQQFLKTLSRGHKLLQRTIQKLN-SKVLPGNVAWRL 234


>gi|321442067|gb|ADW85448.1| ala-tRNA synthetase [Euclea delphinii]
          Length = 235

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   DTGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRETGGALSLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKKANYDTDFFMPLFKAIEIGTGARPYSGKVGPEDTDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGHPDNTGRGYVLRRILRRAVRYTTEKLNGKPGFFGSLVHTVVQLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIHIINEEELQFLKTLTRGRNLLNRTIEKLSDKKIVPGDVAWRL 235


>gi|51102332|gb|AAT95879.1| alanyl-tRNA synthetase [Mastigamoeba balamuthi]
          Length = 208

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 8/209 (3%)

Query: 93  LGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKII 152
           LGN+SFG Y+KE A+  +W+LLT+ + L + RL++TV+++D+E+ ++W ++SGL   +I+
Sbjct: 1   LGNWSFGDYYKEEALAWSWELLTQVWQLPKDRLFVTVFEDDDESAEIWARVSGLPK-RIM 59

Query: 153 RITTNDNFWSMAETGPCGPCSEIFFDQG------ECIPGGLPGSSEEGERYIEIWNLVFM 206
           +     NFW M +TGPCGPCSEI FD+G      E     + G +   +RYIEIWN VFM
Sbjct: 60  KFGAKSNFWEMGDTGPCGPCSEIHFDKGDLATQAETFADPIKGVNGTNDRYIEIWNNVFM 119

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-E 265
           Q+E+    E   L   ++DTGMG ER+  +LQ   +NYD D+F  +I    +++G+ Y +
Sbjct: 120 QYERVKSGELIPLKSKNVDTGMGFERVCAILQNVRSNYDTDVFSPIIAKIAELSGVPYGQ 179

Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPAN 294
           G   + HRV+ DHLR+ SF IADG LP+N
Sbjct: 180 GPEGMPHRVVADHLRALSFAIADGALPSN 208


>gi|262301345|gb|ACY43265.1| ala-tRNA synthetase [Eremocosta gigasella]
          Length = 235

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LPK  +
Sbjct: 1   DTGPCGPCSEIHFDRI-GNRDAKHLVNADVPDVLEIWNLVFIQFNRETDGVLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K +NYD DLF  + +A E+ TG +               + +RV+
Sbjct: 60  DTGMGLERLVSVIQCKXSNYDTDLFVPIFEAIEKSTGARPYQGKVGKEDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++D   P N GRGYVLRRI+RRA+ +A   L         L+P +   +G
Sbjct: 120 ADHIRTLTVALSDXGRPDNTGRGYVLRRILRRAVRFATEKLNAKPGTFASLVPVVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+ +F KTL RG  LL+  +  LG   +L G+VA++L
Sbjct: 180 DTFPEIKKDPQSVMDIINDEETQFLKTLSRGHRLLERTIHKLGDQNLLPGNVAWRL 235


>gi|321442111|gb|ADW85470.1| ala-tRNA synthetase [Eucalantica sp. JCR-2011]
          Length = 235

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNREVDGTLKALPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +++Q+K  NYD D F  L +  E+ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSIIQDKRANYDTDFFMPLFKVIERGTGVRPYSGKVGIEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGFPDNTGRGYVLRRILRRAVRYASEKLXAKPKFFGTLVHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  LG   ++ GDVA++L
Sbjct: 180 DVFPEIKKDPEGIIQVINDEEIQFLKTLSRGRKLLNRTIEKLGNITVVPGDVAWRL 235


>gi|262301321|gb|ACY43253.1| ala-tRNA synthetase [Acheta domesticus]
          Length = 235

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF ++   E   LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REVPHLVNQDDPDVLEIWNLVFIQFNREVGGELKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D GMGLER+ +V+Q+K +NYD DLF  L QA +Q TG +               + +RV+
Sbjct: 60  DCGMGLERLVSVIQQKRSNYDTDLFMPLFQAIQQGTGSRPYAGLVGSEDSDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L      +  L+  +   +G
Sbjct: 120 ADHARTLTIALADGGYPDNTGRGYVLRRILRRAVRYATEKLNAKAGWLSSLVHVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  ++ L   + + GD+A++L
Sbjct: 180 DTFPEVKRDPQAIIDVINEEEIQFLKTLSRGRSLLNRTVAKLEGADTVPGDIAWRL 235


>gi|37521918|ref|NP_925295.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|35212917|dbj|BAC90290.1| gll2349 [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 106/416 (25%), Positives = 183/416 (43%), Gaps = 12/416 (2%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
            V + V  I+  G+   EAV+G +V VV   +PF AE  GQ  D G    + + + +  V
Sbjct: 33  AVPAQVLGILAGGKPCAEAVAGAEVVVVLSHSPFLAEGSGQACDQGVLAAENLVVAVEAV 92

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +++   +++H   V+RG L+   ++   ++   RR +  +HSA HLLH AL  +LG+ + 
Sbjct: 93  RRQ-GAVYLHKGKVQRGELKVGETVQAQVNAIRRRLVQTHHSAVHLLHAALRRVLGAEIE 151

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q G+    D LRF+    + +   E+  +E  VN  + +  P+    M  E A   GA  
Sbjct: 152 QRGALAASDRLRFEFAAPQSLGGQEVARVEQVVNLWVLEGHPLGVETMPAEKARQIGALP 211

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             G +Y ++VRV  +   + G     LCGGTHVS+T EI    IV  S   AG+RR+EA+
Sbjct: 212 FPGERYGEQVRV--IGTPEIGF---ELCGGTHVSNTIEIGPFKIVGHSEPEAGVRRLEAV 266

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--WEEYRKLQLIHAKRKLQLNVE 784
            G     +L   ++  + L    K     +  R+  +    ++   Q+   K  L L   
Sbjct: 267 AGLALLDYLRAHEQVTRILGEQFKAPLAQLPERLGAVLTQAQWAISQVEDLKVALALARC 326

Query: 785 DL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
           +       +      +   + + +   L +  +    K+  G ++L         +  + 
Sbjct: 327 EACLGEVEQYGQYRVLVADLGDTEPAALAAAAEGTLSKLGEGTVVLGSSPGADAVAFTVA 386

Query: 842 VTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +   +    NA   A   A++ GGG   G   +AQ+ G    +   A+    + L
Sbjct: 387 FSPKAVGLGLNAGQFAAALAQLTGGGDTQGNAQIAQAAGRQPTRLKAALDLAFAKL 442


>gi|321442113|gb|ADW85471.1| ala-tRNA synthetase [Zeuzera coffeae]
          Length = 235

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RNAASLVNKDDPDVLEIWNLVFIQFNRESDGSLQSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+G ER+ +V+Q K  NYD DLF  L +A E+ TG++               + +RV+
Sbjct: 60  DCGLGFERLVSVIQNKKANYDTDLFVPLFKAIEEGTGVREYSGKVGVEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   + 
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVNTVVDLLE 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + +T+  E+ +F KTL RG  LL+  +  L   + + GDVA+++
Sbjct: 180 DTFPEINKDPKSVIQTINEEEIQFLKTLLRGRNLLNRTIEKLNDCKTVPGDVAWRM 235


>gi|15488935|gb|AAH13593.1| AARS2 protein [Homo sapiens]
          Length = 551

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 128/557 (22%), Positives = 217/557 (38%), Gaps = 57/557 (10%)

Query: 385 DVAFKLY--DTHGLPLDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTT 441
           +VA+ L      GLPLD+++ +L  +G+  +D     + A EE + RAR        G  
Sbjct: 1   EVAWSLSLCGDLGLPLDMVELMLEEKGV-QLDSAGLERLAQEEAQHRARQAEPVQKQG-- 57

Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501
             +W  +    G  Q  G      S    +    L      +     + +++   + G  
Sbjct: 58  --LWLDVHA-LGELQRQGVPPTDDS---PKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTA 111

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIV 560
           V     GQ+  ++ D+T FYAE GGQ  D G  +  G    +  V + +  G F+ H  V
Sbjct: 112 VASVGKGQRCGLLLDRTNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAV 171

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               LR    + L +D   R      H+ATHLL+ AL   LG    Q GS + P+ LR D
Sbjct: 172 APECLRLGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLD 231

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---- 676
           VT   P+T  +L+++E+ V + + Q+  V    +             L   Y D V    
Sbjct: 232 VTTQTPLTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVS 291

Query: 677 ------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-- 728
                   +    +     S  LC GTH+  TG +  L I+ +  +  G  R+ A+TG  
Sbjct: 292 VGVPVAHALDPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQ 351

Query: 729 -QRARSHLMGQDEKLKSLASFLKVSQGNVVGRV-----------------------EEIW 764
            Q+AR       +++K+    L +   +V   +                        E+ 
Sbjct: 352 AQQARELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELL 411

Query: 765 EEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMS-HIISEVDSKELKSVMD---ALQK 818
              + LQ     A RKLQ+        ++ + +     I+  V ++ L  ++     L +
Sbjct: 412 ATVKMLQRRANTAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCE 471

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           +  S  ++L+      K      V +  +  F A   A      +GG   G R  +AQ  
Sbjct: 472 QAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR-VVAQGT 530

Query: 879 GPNGNKADQAIAGVASF 895
           G   +  + A++   ++
Sbjct: 531 GSTTD-LEAALSIAQTY 546


>gi|262301397|gb|ACY43291.1| ala-tRNA synthetase [Skogsbergia lerneri]
          Length = 234

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 134/236 (56%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF +        LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAASLVNMDDPNVVEIWNLVFIQFNRDTDGGLNPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +++QE+++NYD  LF  + +A ++ TG++    +          + +RV+
Sbjct: 60  DTGMGFERLLSIIQERSSNYDTGLFTPIFEAIQKETGVRAYTGHVGADDTDGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N+GRGYVLRRI+RR + YA   LG    L+  L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNQGRGYVLRRILRRGVRYATEKLGAKPGLLGKLVHTVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+E F KTL RG  LL   +S L     L GDVA++L
Sbjct: 180 EQFPEVTKDPQSVIDIINEEEETFLKTLTRGQKLLSRTISKLN-GTTLPGDVAWRL 234


>gi|321442097|gb|ADW85463.1| ala-tRNA synthetase [Spodoptera frugiperda]
          Length = 234

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEVGTGTRPYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVHVVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +  L + + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 180 DVFPEITKDPLSLIQLINEEELQFLKTLTRGRNLLNRTIEKLN-GKVIPGDVAWRL 234


>gi|259015935|gb|ACV89250.1| alanyl-tRNA synthetase [Platystoechotes sp. BMW-2009]
          Length = 226

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 91/228 (39%), Positives = 128/228 (56%), Gaps = 19/228 (8%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK+     AW+LLT+ F L    LY+T +        + D E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICTWAWELLTQVFKLPADNLYVTYFGGHEASGLEPDLEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W K+ G+    I+  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KNIWLKL-GVLEHHILPGSMKDNFWEMGETGPCGPCSELHFDRI-GNRDAAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++     +LPK  ID G+GLER+ +V+Q K  NYD DLF  L +A 
Sbjct: 119 VLEIWNLVFIQFNRESDGSLKLLPKKHIDCGLGLERLVSVIQGKRANYDTDLFTSLFEAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANE 295
           ++ TG++               + +RV+ DH R+ +  +ADG  P N 
Sbjct: 179 QKGTGIREYQGKIGDADKDGIDMAYRVLGDHARTLTIALADGGRPDNT 226


>gi|289803192|ref|ZP_06533821.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 296

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 93/258 (36%), Positives = 149/258 (57%), Gaps = 12/258 (4%)

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +NLP+ T IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG
Sbjct: 1   RRNLPIETNIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTG 55

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           +I L  I+SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  +
Sbjct: 56  DIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAV 115

Query: 764 WEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            E  R+L+    + K Q   ++          +  V  +   ++ ++ K L++++D L+ 
Sbjct: 116 LERTRQLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKN 175

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           ++ S +I+L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+G
Sbjct: 176 QLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAG 233

Query: 879 GPNGNKADQAIAGVASFL 896
           G +      A+A V  ++
Sbjct: 234 GTDAAALPAALASVQGWV 251


>gi|241998228|ref|XP_002433757.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215495516|gb|EEC05157.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 419

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 113/414 (27%), Positives = 183/414 (44%), Gaps = 51/414 (12%)

Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592
           C   + +   +T+V  +  G  VH   +  G LR    L L ID Q R+ +  NH+ TH+
Sbjct: 3   CETNEDLEFAVTEVHTQ-GGYVVHIGRLISGTLRVGDKLKLAIDEQRRKLVMNNHTGTHI 61

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L+ AL  +L +   Q GS + PD LRFD  + KP++ AE+K+ E +  ++I++N  V  +
Sbjct: 62  LNFALRKVLTAEADQRGSLVAPDRLRFDFANKKPMSPAEVKAAEQSAVELISKNGEVYAK 121

Query: 653 IMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCGGTHVS 700
                 A A  G  A+    Y D VRVVS+               G + S   CGGTH+ 
Sbjct: 122 DSPLSIAKAIQGLRAVFNETYPDPVRVVSIGVPVDDLMADPSSPAGSLTSIEFCGGTHLK 181

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL----ASFLKVSQ--- 753
             G +    I +E +I  GIRRI A+TG  A   L   +     +    A   KV+Q   
Sbjct: 182 RAGHVGDFVITTEEAIAKGIRRIVALTGPEAAKALKKAEHYQNEVNRIKAEGAKVTQAAQ 241

Query: 754 -GNVVGRVEEIWEE--------YRKLQLIHAKRKLQLNVEDLS----------------- 787
              +V ++ E+ EE        ++K +L    + L+  ++DL                  
Sbjct: 242 GKELVKQLVELTEEISQSNISYWKKDELRTELKNLKKQLDDLDRSNKAQAQQMAIENVKK 301

Query: 788 -CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTE 844
              +  D  ++ H +    ++K L + +  ++    +   M      E  K   L  V +
Sbjct: 302 LLEQKKDSEYIVHALEVGDNAKALDAALKQVRTITPNAAAMFFSCDAEKGKVICLSSVPK 361

Query: 845 DLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           D++ R   A    +  ++V+ GG GGGR   AQ+ G N +  D+A+    +F K
Sbjct: 362 DIVARGLTANGWIKEVSEVI-GGKGGGREESAQAIGNNVSSLDKALEVAHNFAK 414


>gi|94272583|ref|ZP_01292152.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93450079|gb|EAT01436.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1]
          Length = 267

 Score =  249 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/272 (33%), Positives = 151/272 (55%), Gaps = 11/272 (4%)

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++ +E  VN  I  N  + T ++NR++A+ SGAAAL G KY + VRVV+V     G  S 
Sbjct: 1   IREVERLVNVEIRANNSLETAMVNRDEALQSGAAALFGEKYGETVRVVTV-----GEFSK 55

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LCGGTHV +TGEI L  I++E+ I A  RRIEA+ G+ A       +++  +LA  LK 
Sbjct: 56  ELCGGTHVGATGEIGLFRIIAEAGIAASTRRIEAVCGEEALHRCQQLEDQWAALAGRLKC 115

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806
             G + GR++++    ++L+    +   Q +  DL        +I     ++  +     
Sbjct: 116 GPGELAGRIDKLLARQKELERKLTQMASQASGFDLERELSRVREIGGARLLACRVPADSV 175

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           K L+ + D ++ K+ S  I ++    + +A++L +V ++L  R+ A +L +  A ++ GG
Sbjct: 176 KTLRELGDKVRDKLGSTGIAVLAAEIDGQAALLALVGKELQGRYKAGELVKQVAALV-GG 234

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGGRP MAQ+GG +    DQA+A V   ++K
Sbjct: 235 KGGGRPDMAQAGGGDPAGIDQALAAVPEIVEK 266


>gi|321442063|gb|ADW85446.1| ala-tRNA synthetase [Dalcerides ingenita]
          Length = 235

 Score =  248 bits (632), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REAAHLVNMDDPDVLEVWNLVFIQYNREKDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  L +A E  TG K               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFVPLFKAIESGTGAKPYTGKVGAEDVNGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVYTVVDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DTFPEIKKDPEAIIHIINEEEIQFLKTLTRGRNLLNRTIDKLNDTKTVPGDIAWRL 235


>gi|321442045|gb|ADW85437.1| ala-tRNA synthetase [Alucita sp. JCR-2011]
          Length = 235

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNREKDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A EQ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIEQGTGVRPYSGKVGDEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFGSLVRTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +I+ GDVA++L
Sbjct: 180 DVFPEIKKDPESIIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNSKIIPGDVAWRL 235


>gi|51102326|gb|AAT95876.1| alanyl-tRNA synthetase [Entamoeba invadens]
          Length = 607

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 154/699 (22%), Positives = 251/699 (35%), Gaps = 156/699 (22%)

Query: 49  IFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFK 103
             TGQ +P    +   Q C+R     NDLDN+G + RH + F M+G   F       +FK
Sbjct: 2   CVTGQLEPPANPLICPQFCLR----FNDLDNIGISGRHFSGFIMIGLQVFNSPQKYVFFK 57

Query: 104 ERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM 163
           E  +      LTKE ++D   +                             T  ++ W  
Sbjct: 58  EECVDYNLRWLTKELEIDPDDI-----------------------------TLIEDVWCG 88

Query: 164 AETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFILPK 221
              G  GP  E+F                   R +E+ N+VF Q++  +  K E   L  
Sbjct: 89  G--GNLGPSIEMFV------------------RGLEVGNMVFTQYKILDFVKGEFEPLKH 128

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV----------- 270
             ID G+GLER+  ++   + +Y ++ F   ++   +   +  E + I            
Sbjct: 129 QVIDVGIGLERIPWLVNGTSTSY-LEAFPCAVKYLREKLNVTLESDVITKFAPYCCLLNL 187

Query: 271 ---------------------------------NHRVIVDHLRSSSFLIADGILPANEGR 297
                                            +  ++ DH RS    I DG LP+  G 
Sbjct: 188 DECDDVNKAWGEIAKECGVENREILENAIKPARDLYIVADHSRSLLIAIYDGALPSAVGG 247

Query: 298 GYVLRRIMRRAMCYARLLGYTEPL-----MMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           G  LR I+RR     +  G+ E L     +M L      ++   Y +  + K    + + 
Sbjct: 248 GANLRNIVRRLFSVLKNNGWWEMLGGMDGLMELFEMHKRDLEKIYGKFDEYKSF-RKIIE 306

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412
            E +R+  T       +  +     K  +L  D       + GL  D + ++        
Sbjct: 307 MEYQRWITTDAESQQKVQQL--LKKKKGVLTVDDWITAMKSFGLSPDKISEV-------- 356

Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
                                        + ++  + E       +    L  +    E 
Sbjct: 357 -----------------------SKMPVPDNLYSKIAEIEAQHVKLLPTELYETADFPET 393

Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV--EVVFDQTPFYAEAGGQLGD 530
           +++  +   +    G    +       E V E   G K    V+ DQ+ FY   GGQ  D
Sbjct: 394 KELFYEDGNLRKFEGKIVTIL------EQVNEKGKGTKNFNLVILDQSAFYPIGGGQDND 447

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHA--IVERGILRTEMSLVLTIDYQNRRQLSINHS 588
           TG    DG    +T V+K  + I  H +    E+       +    +D   R QL  +H+
Sbjct: 448 TGKMEIDGKMYDVTYVEKVGKCILHHLSGNFAEKVETLIGKTATGYVDDARRNQLRAHHT 507

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
           ATH++H A   +LG HV QNG+  T      D+TH   IT  E   IE   N+I+ +NL 
Sbjct: 508 ATHVIHQAAHQVLGPHVWQNGAKKTVKEAHLDITHFASITREEENQIEKLANEIVRKNLK 567

Query: 649 VVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYED 685
           V   ++++EDA      +L   G    + VR+V ++  D
Sbjct: 568 VNKFVLSKEDAERKYGFSLYQGGVVAGNTVRIVDIDNFD 606


>gi|157813822|gb|ABV81656.1| putative AATS-ALA protein [Lithobius forticatus]
          Length = 236

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/237 (36%), Positives = 137/237 (57%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+Q+ ++   +   LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAKHLVNADDPDVLEIWNLVFIQYNREVGGKLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q+K++NYD D+F  + +A E+  G +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQQKSSNYDTDIFVPIFKAIEEKMGARPYEGKLGADDTEGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L     L   L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGRPDNTGRGYVLRRILRRAVRYASEKLKAKPGLFASLVDDVVATLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKL 390
             +PE+ +   ++++ +  E+ +F KTL+RG  LL+  +  L  +  +L GDVA++L
Sbjct: 180 GTFPEVTKDPQMVKDIINDEETQFLKTLNRGRRLLERTIGKLTSRQTVLPGDVAWRL 236


>gi|321442079|gb|ADW85454.1| ala-tRNA synthetase [Lagoa crispata]
          Length = 235

 Score =  246 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E+ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEEGTGTRPYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKSGFFASLVYTVVALLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L    I+ GD+A++L
Sbjct: 180 DVFPEIKKDPESIIQIINEEEIQFLKTLSRGRNLLNRTIEKLNNTNIVPGDLAWRL 235


>gi|262301317|gb|ACY43251.1| ala-tRNA synthetase [Armillifer armillatus]
          Length = 234

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 12/236 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI +D+           ++     +EIWNLVF+Q+ +++      LP   I
Sbjct: 1   DVGPCGPCSEIHYDRI-GNRDASHLVNKNDPNVLEIWNLVFIQYNRESNGNLHFLPSKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+G ER+ +V+Q   +NYD DLF  L +  ++ TG+                  +RV+
Sbjct: 60  DCGLGFERLVSVIQGTLSNYDTDLFSPLFECIQKKTGLPPYSGKVGIEDSSGYDTAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ Y          L+  L+P +   + 
Sbjct: 120 ADHARTLTVALADGGRPDNTGRGYVLRRILRRAVRYCCDKFKCKPGLLSSLVPVVIHTLK 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           + +PEL + + +I++ + +E+  F KTL RG +LL   +  L K+ IL G VA+KL
Sbjct: 180 NIFPELSKNQEIIQDLINTEEVLFLKTLKRGQLLLKRAIEGLPKN-ILPGQVAWKL 234


>gi|321442065|gb|ADW85447.1| ala-tRNA synthetase [Acraga philetera]
          Length = 235

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-REAAHXVNMDDPDVLEVWNLVFIQYNREKDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  L +A E  TG K               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFVPLFKAIETGTGAKPYTGKVGAEDVDGTDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTISLSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVXTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL+RG  LL+  +  LG    + GD+A++L
Sbjct: 180 DTFPEIKKDPEAIIHIINEEEIQFLKTLNRGRNLLNRTIEKLGDTXTVPGDIAWRL 235


>gi|226490136|emb|CAX69310.1| Alanyl-tRNA synthetase [Schistosoma japonicum]
          Length = 297

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/190 (48%), Positives = 116/190 (61%), Gaps = 14/190 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F +FF   GH  + SSS IP NDP+L+F N+GM  +K IF G   P      
Sbjct: 6   TARELRQQFFDFFNSRGHVYVHSSSTIPHNDPSLLFANAGMNQYKPIFQGTADPNSELGQ 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117
            +     QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK+ A  LAW+LLT  
Sbjct: 66  LKRAYNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACGLAWELLTDV 125

Query: 118 FDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169
           + + + RLY+T +          DEEA  +W  I GL  D ++     +NFW M ETGPC
Sbjct: 126 WKIPRERLYVTYFGGDSSCGLPADEEARDVWISI-GLPKDHVLPFGMKENFWEMGETGPC 184

Query: 170 GPCSEIFFDQ 179
           GPCSEI +D+
Sbjct: 185 GPCSEIHYDR 194


>gi|321442099|gb|ADW85464.1| ala-tRNA synthetase [Synemon plana]
          Length = 235

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGD-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A +  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFKAIQAGTGVRSYTGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVNTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPKSIIQIINEEEIQFLKTLSRGRNLLNRTIDRLNDSKTIPGDIAWRL 235


>gi|330973619|gb|EGH73685.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 281

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 156/285 (54%), Gaps = 11/285 (3%)

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           FD +H + I + +L+++ED VN  I +N  V+T   + + A   GA AL G KY D VRV
Sbjct: 1   FDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEETDIDTAKKKGAMALFGEKYGDSVRV 60

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +S+    GG  S  LCGG H S TG+I L  IVSE  + AG+RRIEA+TG  A + L   
Sbjct: 61  LSM----GGEFSVELCGGIHASRTGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSA 116

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAKRKLQLNVEDL---SCHKIAD 793
           +++LK  A+ +K ++ N++ ++  + E  R L+      + K      D    +   +  
Sbjct: 117 EDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQPEQLQAKAASAAGDDLSSAALDVKG 176

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V  ++  +   D K L +++D L+ K+   +I+L G   E K  ++  VT+DL  +  A 
Sbjct: 177 VKVLATRLDGQDGKALLALVDQLKNKLGRAVILL-GSVHEDKVVLVAGVTKDLTGQLKAG 235

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           DL + +A  +GG GG GRP MAQ GG +    D A+A    F+++
Sbjct: 236 DLMKQAAAAVGGKGG-GRPDMAQGGGVDAGALDSALALAVPFVEQ 279


>gi|157813830|gb|ABV81660.1| putative AATS-ALA protein [Podura aquatica]
          Length = 237

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 137/237 (57%), Gaps = 11/237 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +E+WNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGGGRNAASLVNMDDPDVLEVWNLVFIQFNRESDGSLKSLPKKHI 60

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q K +NYD DLF  + +A E+ TG +               + +RV+
Sbjct: 61  DCGMGLERIVSVIQNKRSNYDTDLFVPIFKALEKATGSRAYSGKVGVEDSDGVDMAYRVV 120

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG    L   L+  +   +G
Sbjct: 121 ADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGIRYAIEKLGGKPGLFAQLVDTVIESLG 180

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKL 390
           S +PEL +    +++ +  E+ +F KTL RG  LL+  +S L    ++L GD+A++L
Sbjct: 181 STFPELSKDPQSVKDVINEEESQFLKTLSRGRSLLERTVSKLEXGCKVLPGDIAWRL 237


>gi|148645078|gb|ABR01063.1| AlaS [uncultured Geobacter sp.]
          Length = 171

 Score =  244 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 96/171 (56%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 42  GMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           GM  FK+ F G EK  Y    + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG Y
Sbjct: 1   GMNQFKDCFLGLEKRDYLRAASSQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
           FK+ AI  AW+ LT E  L + +LY+TVY +D+EA  +W +  G+  ++I R    DNFW
Sbjct: 61  FKKEAIAFAWEFLTVELGLSRDKLYVTVYTDDDEAAAIWHEQEGVPLERIYRFGEKDNFW 120

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQ 210
           SM +TGPCGPC+EIF+D G     G P  +   + +RY+EIWN VFMQF +
Sbjct: 121 SMGDTGPCGPCTEIFWDNGPGTGCGSPDCAVGCDCDRYMEIWNNVFMQFNR 171


>gi|262301375|gb|ACY43280.1| ala-tRNA synthetase [Milnesium tardigradum]
          Length = 235

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +++    +EIWNLVF+QF ++       LPK  I
Sbjct: 1   ETGPCGPCSEIHFDR-JGGRDASALVNQDDPDVLEIWNLVFIQFNREPDSSLVPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K +NYD DLF  + +A E+ TG +               + +RV+
Sbjct: 60  DTGMGLERLVSVIQNKRSNYDTDLFMPIFKAIEKGTGSRAYXGKVGXEDTDKMDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+    ++DG  P N GRGYVLRRI+RRA+ YA   L      +  L+P +   +G
Sbjct: 120 ADHIRTLVXALSDGGRPDNVGRGYVLRRILRRAIRYASEKLNAKPGFLGSLVPTVVEMLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            A+PE+ +    +   +  E+ +F +TL RG  LL+  ++  G  ++L+G+VA++L
Sbjct: 180 DAFPEVRKDPTTVTRIIDEEETQFLRTLVRGRRLLERTINQSGXSKVLSGEVAWRL 235


>gi|321442049|gb|ADW85439.1| ala-tRNA synthetase [Argyrotaenia alisellana]
          Length = 235

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGGRNAAH-LVNMDDPDVLEIWNLVFIQFNRESDGSLRPLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFVPIFKAIEVGTGTRPYSGKVGDEDVDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFASLVHTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I ET+  E+ +F KTL RG  LL+  +  LG  + + G+VA++L
Sbjct: 180 DVFPEIKKDPESIIETINEEEIQFLKTLTRGRNLLNRTIEKLGDSKTVPGEVAWRL 235


>gi|321442043|gb|ADW85436.1| ala-tRNA synthetase [Apoda biguttata]
          Length = 235

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRETDGSLSLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A +  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPLFEAIQIGTGVRPYSGKVGVEDTDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFSSLVHTVVKLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I   +  E+ +F KTL RG  LL+  +  L   + + GD+A++L
Sbjct: 180 DVFPEIKKDPESIIHIIDEEEIQFLKTLSRGRNLLNRTIEKLNNSKTVPGDLAWRL 235


>gi|300214776|gb|ADJ79192.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 230

 Score =  243 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 141/231 (61%), Gaps = 18/231 (7%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+FF+  GH+++ S+ LIP +DPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
           + QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+LLT  + FD+
Sbjct: 65  SSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPEWFDM 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
           D+ +LYITVY ED++A K W+++ G+    I      DNFW + E GP GP SEIFFD+G
Sbjct: 121 DKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYEA--EDNFWDIGE-GPSGPDSEIFFDRG 176

Query: 181 ECI---PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226
           + +   P   P      E ERY+EIWN+VF +F      +   +    I T
Sbjct: 177 QEMNNLPEDDPESYPGGENERYLEIWNIVFSEFNHN---QMEHMNHCHIKT 224


>gi|157813842|gb|ABV81666.1| putative AATS-ALA protein [Prodoxus quinquepunctellus]
          Length = 235

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++      LPK  I
Sbjct: 1   ETGPCGPCSELHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKFLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +  ++ TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQGKRANYDTDFFMPLFEEIQKGTGVRAYTGKVGDDDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTVALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVHTVVKCLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I ET+  E+ +F KTL RG  LL+   + LG   I+ GDVA++L
Sbjct: 180 DTFPELKRDPQSIIETINEEEIQFLKTLSRGRNLLNRTFTKLGNSTIVPGDVAWRL 235


>gi|148645080|gb|ABR01064.1| AlaS [uncultured Geobacter sp.]
          Length = 171

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 95/171 (55%), Positives = 118/171 (69%), Gaps = 2/171 (1%)

Query: 42  GMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           GM  FK+ F G EK  Y    + QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG Y
Sbjct: 1   GMNQFKDCFLGLEKRDYVRAASSQKCVRAGGKHNDLEIVGRTARHHTFFEMLGNFSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
           FK+ AI  AW+ LT +  LD+ RLY+TVY ED+EA ++W    G+  ++I R    DNFW
Sbjct: 61  FKKEAIAYAWEFLTVDLGLDKERLYVTVYTEDDEAAEIWHTQEGVPRERIYRFGEKDNFW 120

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSS--EEGERYIEIWNLVFMQFEQ 210
           SM + GPC PC+EIF+D G  +  G P  +   + +RY+EIWN VFMQF +
Sbjct: 121 SMGDAGPCHPCTEIFWDNGPEVGCGSPDCAVGCDCDRYMEIWNNVFMQFNR 171


>gi|27982009|gb|AAM94643.1| alanyl tRNA synthetase [Spironucleus barkhanus]
          Length = 623

 Score =  243 bits (619), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 131/622 (21%), Positives = 249/622 (40%), Gaps = 71/622 (11%)

Query: 265 EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMC--------YARLLG 316
           E   + +  +++DHLRS    I DG LP+N G G  LR + RR +         +  L G
Sbjct: 26  EIEIVRDIYIVLDHLRSLLVAIQDGALPSNVGGGCNLRNVFRRVLSILQKNNWIHIGLDG 85

Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376
             E +  H +     +   ++PE       +++ L  E  R+  T          +   L
Sbjct: 86  IYEIMESHRIDLQKIQGPDSFPEFK----PMKQVLDIEILRWKTTDADAKSK---LQKLL 138

Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL 436
            K+ IL  D       T G+  D +  I                 + EQ+   +  +   
Sbjct: 139 KKNPILKLDDWVVASTTFGIDPDTIAQISA-----QPIPNDLYSKISEQQELNQVKTHQK 193

Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496
               T  +          T+ + Y    G +   ++                 + +  I+
Sbjct: 194 QLYDTHDLL--------PTEQVYYTEENGEEKFIQND----------------AKLVKII 229

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFV 555
           +  E         K   VFD+T FY  +GGQ  D G  + D    ++I DV+K    +F 
Sbjct: 230 EDVE-----NKNSKTIFVFDKTIFYPISGGQANDIGIIVTDQNETIEIIDVKKVGPVVFH 284

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           +     +      +S ++ ID +NR QL  +H+  H++  A   ILG H+ Q G+  T  
Sbjct: 285 YAKNTPKIPF---ISCIMKIDEENRYQLMCHHTGAHVISAACRQILGPHIWQAGAKKTAK 341

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL--GTKYN 673
               D+TH + +   E   IE   N ++  +LP+    + + +A       L   G    
Sbjct: 342 EATLDITHFRSLDPEEELEIEKLSNRLVRNSLPITKENLLKNEAENRYGFTLYQGGVVPG 401

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             VR V ++  D        C GTH+S+T  I L+ ++    +  G+ R+  + G+ A +
Sbjct: 402 SSVRCVCIQNTDF-----EACCGTHLSNTSRIGLIRLIKSKRVSDGVVRLTFVCGEAALT 456

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKL-QLNVEDLSCHK 790
           +   Q + + +L +   V Q  ++   ++ ++ ++KL  ++   + KL Q  ++ L   +
Sbjct: 457 YSESQQQIINNLKTSWGVDQSQILQTADKFFDGWKKLGNKVDLIQEKLFQERLDSLHGIQ 516

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKK-IQSGIIMLVGISKEKKASVLIVVTED---L 846
           IA  +    +  +  ++ +  + + + +K IQ+G ++   +      ++ +  T D    
Sbjct: 517 IAKFS----VFEDTPTRYISQLGEIIGEKFIQNGELITQFMFLGIDFAIFVAKTGDFKTE 572

Query: 847 LDRFNAVDLARLSAKVLGGGGG 868
           ++   A +  +     L GG G
Sbjct: 573 VESILAKNDVKPKVSPLKGGKG 594


>gi|321442061|gb|ADW85445.1| ala-tRNA synthetase [Cyclotorna sp. JCR-2011]
          Length = 235

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRI-GNRDAAHLVNMDDPDVLEIWNLVFIQFNRETDGTLKLLPKRHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A E+ T M+               + +RV+
Sbjct: 60  DCGLGLERLISVIQNKRANYDTDLFIPLFKAIEKGTSMRPYSGKVGKEDIDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRAVRYACEKLNAKPGFFGSLVNVVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I ET+  E+ +F KTL RG  LL+  +  L   +I++GDVA++L
Sbjct: 180 EVFPEIKKDPKSIIETINEEEIQFLKTLLRGRNLLNRTIDKLNSSKIVSGDVAWRL 235


>gi|321442077|gb|ADW85453.1| ala-tRNA synthetase [Lacturidae gen. sp. JCR-2011]
          Length = 235

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  + +A E  TG K               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFMPIFKAIEIGTGAKPYSGKVGAEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGYPDNTGRGYVLRRILRRGVRYATEKLNAKPGFFASLVHTVVQLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I E +  E+ +F KTL RG  LL+  +  LG  +++ GD+A++L
Sbjct: 180 DVFPEIKKDPESIIEIINEEEIQFLKTLIRGRNLLNRTIEKLGSLKVIPGDLAWRL 235


>gi|330902429|gb|EGH33472.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 175

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 98/176 (55%), Positives = 122/176 (69%), Gaps = 10/176 (5%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT  K  
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWL 119

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETG 167
           +L + +L++TVY  D+EA+ +W K  G+ A++++RI  N       DNFW+M +TG
Sbjct: 120 NLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTG 175


>gi|262301385|gb|ACY43285.1| ala-tRNA synthetase [Polyzonium germanicum]
          Length = 235

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI +D+           + +    +EIWNLVF+QF ++      +LPK  +
Sbjct: 1   ETGPCGPCTEIHYDRIGE-RDAASLVNADVPDVLEIWNLVFIQFNRETDGSLRLLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           DTGMGLER+ +V+Q K++NYD D F  +  A +  TG++               + +RV+
Sbjct: 60  DTGMGLERLISVVQNKSSNYDTDAFVPIFDAIQTSTGVRKYQGLVGAQDLDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P + GRGYVLRRI+RRA+ YA   L     ++  L+  + + +G
Sbjct: 120 ADHARTLTIALSDGGRPDSTGRGYVLRRILRRAVRYASEKLNAKPGVLAALVDVVVSLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    +++ +  E+ +F KTL RG  LL+  ++ LG   +L GDVA++L
Sbjct: 180 DTFPEVTKDPQSVKDIINEEEAQFLKTLSRGQHLLERTINKLGDQTVLPGDVAWRL 235


>gi|262301353|gb|ACY43269.1| ala-tRNA synthetase [Hadrurus arizonensis]
          Length = 235

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI +D+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   ETGPCGPCSEIHYDRIGG-RDAKHLVNADVPDVLEIWNLVFIQFNRENDGSLKPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           DTGMGLER+ +V+Q+K++NYD DLF  +  A ++ T         G +      + +RV+
Sbjct: 60  DTGMGLERLVSVIQDKSSNYDTDLFVPIFDAIQKATNAIPYQGKVGTEDTNGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ +A   L         L+P +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRAIRFATEKLNAKPGAFASLVPVVIDILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I + +  E+ +F KTL RG  LL+  +  LG +++L G++A++L
Sbjct: 180 DVFPELKRDPQAIIDIILDEETQFLKTLSRGQRLLERTIFKLGNEKVLPGEIAWRL 235


>gi|262301367|gb|ACY43276.1| ala-tRNA synthetase [Leiobunum verrucosum]
          Length = 235

 Score =  241 bits (614), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/236 (39%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+Q+ +++      LPK  +
Sbjct: 1   ETGPCGPCSEIHFDRIGGRQASH-LVNADVPDVLEIWNLVFIQYNRESDGSLKQLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +V+QEK +NYD D F  + +A EQ TG +               + +RV+
Sbjct: 60  DTGMGFERLVSVIQEKPSNYDTDCFMPIFKAIEQATGTRXYTGKVGNDDEGMIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRR++RRA+ +A   L     +   L+P +   +G
Sbjct: 120 ADHARTLTVALADGGTPDNTGRGYVLRRVLRRAVRFATEKLNAKPGMFAQLVPVVIESLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    I + +  E+ +F KTL RG  LL+  +S L   +IL GDVA++L
Sbjct: 180 DVFPELSKDPNSIMDIINDEEAQFLKTLSRGHKLLERTISKLDNSKILPGDVAWRL 235


>gi|262301341|gb|ACY43263.1| ala-tRNA synthetase [Daphnia magna]
          Length = 235

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           + GPCGPCSEI FD+           + +    +EIWNLVFM F +++      LP+  I
Sbjct: 1   DVGPCGPCSEIHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFMTFNRESDGSLKPLPRKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMG ER+ +V+Q K +NYD D+F+ + +A ++ T                  + +RV+
Sbjct: 60  DCGMGFERLVSVIQNKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGSEDVNGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRR++RR + YA   L         L+P +C  +G
Sbjct: 120 ADHARTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQVLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +   L+ + +  E+ +F KTL RG  LL+  +S L     L GDVA++L
Sbjct: 180 LTFPEVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRL 235


>gi|262301337|gb|ACY43261.1| ala-tRNA synthetase [Cryptocellus centralis]
          Length = 235

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 13/237 (5%)

Query: 165 ETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           ETGPCGPCSEI +D+ G    GGL   + +    +EIWNLVF+Q+ ++N      LPK  
Sbjct: 1   ETGPCGPCSEIHYDRIGNRDAGGL--VNADVPEVVEIWNLVFIQYNRENDGSLRSLPKXH 58

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRV 274
           +DTG+GLER+ +V+Q K +NYD DLF  L +A ++VTG++           G   + +RV
Sbjct: 59  VDTGLGLERLVSVIQNKLSNYDTDLFTPLFEAIQKVTGIRPYQGQLGVDDSGGIDMAYRV 118

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333
           + DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y    L         L+P +   +
Sbjct: 119 VADHARTLTIALSDGGRPDNTGRGYVLRRILRRAIRYGTEKLDMKPGQFSTLVPVVVDLL 178

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
           G  +PEL +  L + + ++ E+ +F KTL RG  LL+  +  LG  +IL G VA++L
Sbjct: 179 GDVFPELKKDPLAVIDIIQEEEXQFLKTLARGRRLLERTVGRLGDRKILPGQVAWQL 235


>gi|213419398|ref|ZP_03352464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 248

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 89/250 (35%), Positives = 143/250 (57%), Gaps = 12/250 (4%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            IM+ + A A GA AL G KY++RVRV+S+     G  S+ LCGGTH S TG+I L  I+
Sbjct: 1   NIMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRII 55

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SES   AGIRRIEA+TG+ A + +  Q ++L  +A  LK    N+  +V  + E  R+L+
Sbjct: 56  SESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLE 115

Query: 772 LIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
               + K Q   ++          +  V  +   ++ ++ K L++++D L+ ++ S +I+
Sbjct: 116 KELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIV 175

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
           L  +  E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +     
Sbjct: 176 LATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALP 233

Query: 887 QAIAGVASFL 896
            A+A V  ++
Sbjct: 234 AALASVQGWV 243


>gi|262301389|gb|ACY43287.1| ala-tRNA synthetase [Pedetontus saltator]
          Length = 235

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSE+ FD+           +++    +EIWNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSELHFDRIGG-RNAASLVNQDDPNVLEIWNLVFIQFNRESDGSLKNLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           D G+GLER+ +V+QEKT+NYD D+F  + +A E+ TG                 + +RV+
Sbjct: 60  DCGLGLERLISVIQEKTSNYDTDVFGPIFKAIEKGTGAPPYRGRVGAEDTDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA  YA   L         L+  +   +G
Sbjct: 120 ADHARTITIALSDGGHPDNTGRGYVLRRILRRAXRYATEKLNAKPGFFATLVTTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    + + +  E+++F KTL RG  LL+  ++ LG  + + GDVA+++
Sbjct: 180 DTFPEVRKDPQYVMDVINDEEDQFLKTLSRGRNLLNRTIAKLGGSQTVPGDVAWRM 235


>gi|262301387|gb|ACY43286.1| ala-tRNA synthetase [Phrynus marginemaculatus]
          Length = 235

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF +++      LPK   
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAKDLVNADLPDVLEIWNLVFIQFNRESDGSLKPLPKKHX 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q K++NYD DLF  +  A ++ TG +               + +RV+
Sbjct: 60  DTGMGLERIVSVIQNKSSNYDTDLFVPIFDAIQKATGTRPYSGKVGKEDEDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L     +   L+P +   +G
Sbjct: 120 ADHARTLTVALSDGGRPDNTGRGYVLRRILRRAIRYATEKLNGKPGMFATLVPIVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  ++ +G   +L GDVA++L
Sbjct: 180 DIFPELKKDPQTVIDIITDEENQFLKTLTRGRKLLERTINKMGDLTVLPGDVAWRL 235


>gi|157813834|gb|ABV81662.1| putative AATS-ALA protein [Thulinius stephaniae]
          Length = 235

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPC+EI FD+           +++    +EIWNLVF+QF ++      +LP+  I
Sbjct: 1   ETGPCGPCTEIHFDRI-GNRDASQLVNQDDPDVLEIWNLVFIQFNREADGSLSLLPRKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMG ER+ +V+Q K +NYD D+F  +  A E+ TG +               + +RV+
Sbjct: 60  DTGMGFERLVSVVQNKRSNYDTDVFVPIFAAIEKGTGSRPYTGKIGAEDVDKVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMG 334
            DH+R+    ++DG  P N GRGYVLRRI+RRA+ YA+  L      +  L+P +   +G
Sbjct: 120 ADHIRNLVIALSDGGRPDNVGRGYVLRRILRRAIRYAKEKLNAKPGFLSGLVPQVSETLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            A+PE+ +    +   +  E+ +F +TL RG  LL+  ++ +G  + L GDVA++L
Sbjct: 180 EAFPEVKKDPETVARIIEEEESQFLRTLTRGRRLLERTIAQMGDCKTLPGDVAWRL 235


>gi|150391131|ref|YP_001321180.1| threonyl/alanyl tRNA synthetase, SAD [Alkaliphilus metalliredigens
           QYMF]
 gi|149950993|gb|ABR49521.1| Threonyl/alanyl tRNA synthetase, SAD [Alkaliphilus metalliredigens
           QYMF]
          Length = 403

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 98/408 (24%), Positives = 161/408 (39%), Gaps = 36/408 (8%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           I+       +  VV D+T FY E GGQ  DTG        + +  V +      ++H + 
Sbjct: 20  IINTVEKEGQYHVVLDETYFYPEGGGQPSDTGTI----DSIPVIFVYEDETQETIYHVLE 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----GSHVSQNGSCITPD 615
           ++        +  +ID+  R      H   HLL  ++  +      G H+S++   I  D
Sbjct: 76  KKPNKLK--RVTCSIDWNRRYDHMQQHLGQHLLSASIFELFNGVTVGFHLSEHYCTIDID 133

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
                    K +    +   E  VN  I  +  V        +        +   +   +
Sbjct: 134 ---------KAMNETGILEAEKAVNQSILDSRKVQGLFPTYTELKKLPLRKM-PPQTTGQ 183

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R+V +E  D        C GTH  ST E+ L+ I      + G  RIE + G RA    
Sbjct: 184 IRIVQIEGIDAT-----PCCGTHPHSTLEVQLMKITKWEKYKGG-TRIEFLCGSRAIRDY 237

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLS--CHK 790
             + E +K  A FL  ++  ++ R  ++ EE R+        + Q+    V+D+      
Sbjct: 238 AFKHETIKKTAQFLSCNENTLLERTNQLLEELRQSNADRRSLQAQVTDYEVKDIFTSAES 297

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           + D   +  I +  + K++ S+   L       +I+L GI  E KA +L + +E+L    
Sbjct: 298 VGDNKIIKSIFNNAEMKQINSLASKLVS--FPRVIVLFGIKSEDKAQLLFMRSEELTT-I 354

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +   L R  A  L  G GGG    AQ GG N    D AI      +K+
Sbjct: 355 SMKTLLRD-AITLVDGKGGGSDLSAQGGGKNKGNLDSAIEYAYRQVKQ 401


>gi|157813828|gb|ABV81659.1| putative AATS-ALA protein [Narceus americanus]
          Length = 235

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/236 (36%), Positives = 138/236 (58%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI +D+        P  + +    +EIWNLVF+QF ++N     +LPK  +
Sbjct: 1   DTGPCGPCTEIHYDRIGG-RDAAPLVNADVPDVLEIWNLVFIQFNRENDGSLRVLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVI 275
           DTGMGLER+ +V+Q KT+NY+ D F  +  A ++ TG +               + +RV+
Sbjct: 60  DTGMGLERVVSVIQNKTSNYETDCFMPIFDAIQKATGCRTYQGLLGAEDVDGVDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ Y+   L     ++  L+  +   +G
Sbjct: 120 ADHIRTLTIALSDGGRPDNVGRGYVLRRILRRAIRYSTEKLHSEPGMLASLVDVVIDTLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + EL +    +++ +  E+ +F KTL RG  LL+  ++ L   +IL GD+A++L
Sbjct: 180 DMFVELKKDPQSVKDIIIEEEAQFLKTLSRGQRLLERTINKLSDQKILPGDIAWRL 235


>gi|262301379|gb|ACY43282.1| ala-tRNA synthetase [Orchesella imitari]
          Length = 236

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/237 (37%), Positives = 136/237 (57%), Gaps = 12/237 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPCSEI FD+           +++    +E+WNLVF+QF +++      LPK  I
Sbjct: 1   DTGPCGPCSEIHFDRIGG-RNAADLVNQDDPDVLEVWNLVFIQFNRESDGTLKSLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D GMGLER+ +V+Q+K +NYD DLF  +  A ++ TG +               + +RV+
Sbjct: 60  DCGMGLERIVSVIQQKRSNYDTDLFVPIFDAIQKATGARTYTGKVGXEDSDGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + YA   LG       +L+  +   +G
Sbjct: 120 ADHVRTLTIALSDGGRPDNTGRGYVLRRILRRGIRYAIEKLGGKPGTFANLVDVVVQILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKL 390
             +PE  +    I + +  E+ +F KTL+RG  LL+  +S L   ++ L GDVA++L
Sbjct: 180 DTFPEXQKDPHSIMDVINEEEAQFLKTLNRGRSLLERTVSKLSPTEKTLPGDVAWRL 236


>gi|262301405|gb|ACY43295.1| ala-tRNA synthetase [Streptocephalus seali]
          Length = 235

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           +++    +EIWNLVFM F +++      LPK  I
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAAHLVNQDDPDVLEIWNLVFMTFNRESDSSLKHLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  + +A ++ TG                 + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFMPIFEAIQKGTGAPAYSGKVGAEDKEGIDMAYRVV 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RR + +A   L         L+  +   +G
Sbjct: 120 ADHIRTLTXSLSDGGRPDNVGRGYVLRRILRRGIRFATEKLKAKPGFFGSLVHEVIKILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             + E+ +    +   +  E+ +F KTL RG  LL+  ++ L  +++L GD+A++L
Sbjct: 180 DTFAEIKKDPDSVISIINEEEAQFLKTLSRGRNLLERTIAKLDGNKVLPGDIAWRL 235


>gi|222875352|gb|EEF12483.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  234 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 13/250 (5%)

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           M+ E A A+GA  L G KY D VRV+ +        S  LCGGTHV  TG+I L  +V E
Sbjct: 1   MDIESAKATGAMMLFGEKYGDSVRVLDIGS------SRELCGGTHVQRTGDIGLFKVVGE 54

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
             + AG+RRIEA+TG+ A ++L   +  +   A+ LK     +  R+    E+ R L+  
Sbjct: 55  GGVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKE 114

Query: 774 HA--KRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            A  K KL  +  D    +   +  +  ++  +   D+K L+  MD L+ K+ +  I+L 
Sbjct: 115 VAALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLA 174

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            +  + K  +   VT+    R  A DL    A  + GG GGG+P MA +GG + +    A
Sbjct: 175 AVDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAA 232

Query: 889 IAGVASFLKK 898
           +AGV +++ +
Sbjct: 233 LAGVHAWVAE 242


>gi|158321701|ref|YP_001514208.1| threonyl/alanyl tRNA synthetase SAD [Alkaliphilus oremlandii
           OhILAs]
 gi|158141900|gb|ABW20212.1| Threonyl/alanyl tRNA synthetase SAD [Alkaliphilus oremlandii
           OhILAs]
          Length = 401

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/407 (24%), Positives = 160/407 (39%), Gaps = 37/407 (9%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           I+E      +  +  D+T FY E GGQ  D G          I  V +K + +  H    
Sbjct: 18  IIEVIEEDHQFHIRLDRTYFYPEGGGQPSDVGYIESS----PIIYVYEKED-LIYHVTER 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----GSHVSQNGSCITPD 615
           +    +    +   ID+Q R      H   H+L  +   +      G H+S+  S I  D
Sbjct: 73  KPSKFK---KVQCEIDWQVRFDYMQQHLGQHILSASFVELFDATTIGFHLSKEYSTIDID 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
            +         I S   K +ED  N+ IA NL V T     ++         +  K    
Sbjct: 130 KV---------IDSDGFKKVEDLANETIANNLTVETLFPTEQELRKLPLRKQVSEKVQGP 180

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R+V +     G      C GTH  ST E+ L+ I+     + G+ RIE + G+RA    
Sbjct: 181 IRLVKI-----GDFDLVACCGTHPKSTLEVQLIKIIKVEKYKVGM-RIEFLCGKRAIGDY 234

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-----LNVEDLSCHK 790
             + E LK +A  L V++ +V  RV  +  +   L       + +     +         
Sbjct: 235 SKKQESLKEVARLLGVNEQDVPARVHHMSSDINDLHSSVRALRSEVICHTVEKMLRDAET 294

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           I  +  +  +   +D K + ++   L       +I L GI  + KA +L   +++L    
Sbjct: 295 IDGIKVIKEVYQNIDLKYVNNIATQLTA--YPNVIALFGIEADDKAHLLFAQSKEL-KLL 351

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +   L +  A  L  G GGG    AQ GG N N  D +IA   S ++
Sbjct: 352 SMNVLLKD-AITLIDGKGGGSDFSAQGGGKNNNNLDSSIAYAYSKVR 397


>gi|157813826|gb|ABV81658.1| putative AATS-ALA protein [Mastigoproctus giganteus]
          Length = 235

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++N      LPK  +
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAQSLVNADVADVLEIWNLVFIQFNRENDGSLIPLPKKHV 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           DTGMGLER+ +V+Q KT+NYD DLF  +  A ++ TG +               + +RV+
Sbjct: 60  DTGMGLERIVSVIQCKTSNYDTDLFVPIFDAIQKATGARPYAGRLGSEDTDGVDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH+R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L     +   L+P     +G
Sbjct: 120 ADHVRTLTVALSDGGRPDNTGRGYVLRRILRRAIRYATEKLRARRGMFADLVPVAVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PEL +    + + +  E+ +F KTL RG  LL+  +  L   +IL GDVA++L
Sbjct: 180 DVFPELRKDPQNVMDIINDEEIQFLKTLSRGRYLLERTIGKLDDQKILPGDVAWRL 235


>gi|259015937|gb|ACV89251.1| alanyl-tRNA synthetase [Hydropsyche phalerata]
          Length = 208

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 81/210 (38%), Positives = 115/210 (54%), Gaps = 19/210 (9%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEA 136
            HHTFFEMLGN+SFG YFK+     AW+LLT+   L   RLY+T +        D D+E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICSWAWELLTEVLKLPSERLYVTYFGGDSKSGLDPDDEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W  + G+    I+  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KNIWLNL-GVLPSHILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-REAAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF ++      +LPK  ID G+GLER+ +V+Q K  NYD D+F  + +A 
Sbjct: 119 VLEIWNLVFIQFNRETDGSLRLLPKKHIDCGLGLERLVSVIQNKRANYDTDIFVPIFEAI 178

Query: 257 EQVTGMKYEGNN---------IVNHRVIVD 277
           ++ T  +               + +RV+ D
Sbjct: 179 QKGTNSRPYSGKVGSEDVDGIDMAYRVLAD 208


>gi|262301315|gb|ACY43250.1| ala-tRNA synthetase [Acanthocyclops vernalis]
          Length = 237

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 132/238 (55%), Gaps = 13/238 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSEI FD+           + +    +EIWNLVF+QF ++       LP   I
Sbjct: 1   ETGPCGPCSEIHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNREQDSTLRSLPAKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM----------KYEGNNIVNHRV 274
           D GMG ER+ +V+Q K +NYD D+F  + QA E+ +G+                 + +RV
Sbjct: 60  DCGMGFERLVSVIQNKRSNYDTDIFVPIFQAIEKESGVGVPYKGRVGDDDTDKIDMAYRV 119

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEM 333
           + DH+R+ +  ++DG  P N GRGYVLRRI+RR + Y +  L         L+  +   +
Sbjct: 120 VADHIRTLTVALSDGGRPDNVGRGYVLRRILRRGIRYSSEKLNAKPGFFAALVDTVVQLL 179

Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKL 390
           G  +PE+ +    I+  +  E+ +F KTL+RG  LLD  ++ L +  ++L GD+A++L
Sbjct: 180 GEFFPEVGKDPESIKNIINEEETQFLKTLNRGHKLLDRTIAKLPQGTKVLPGDIAWRL 237


>gi|256075153|ref|XP_002573885.1| alanyl-tRNA synthetase [Schistosoma mansoni]
 gi|238659075|emb|CAZ30118.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 1667

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/292 (30%), Positives = 137/292 (46%), Gaps = 33/292 (11%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY--- 58
           S+VS +R  F+ FFQ + H ++  +S+ P       F N+GM  FK+IF  Q   +    
Sbjct: 520 SSVSELRREFINFFQSHQHSVVAPASVFPKRHEGSYFINAGMNQFKSIFLNQSDNICSEF 579

Query: 59  ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
              +  T  Q C+R GG+H+DL++VG    HHT FEMLG++SFG Y+K+ A    W  LT
Sbjct: 580 KQLRRATNSQPCIRIGGRHDDLNDVGYDRHHHTMFEMLGSWSFGDYYKKEACSQVWKFLT 639

Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167
           +  +L    +YIT +          D+E   +W  + G+   K++      NFW   +  
Sbjct: 640 EVLNLPTNAIYITYFGGDQKLGLPPDDETRDIWLNL-GVMDQKLMPFGIESNFWRANQFS 698

Query: 168 P---CGPCSEIFFDQ-----GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE---- 215
               CGP +E+  D      G+ +       +    + +E+WN VF+        +    
Sbjct: 699 GGGLCGPSTEVHIDFKALCGGDQLDCARCLVNTSSPQVLELWNCVFITHRIIADNDVTEK 758

Query: 216 ------RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
                    L K  +DTGMGLER+A V+Q  T+NYD      L++       
Sbjct: 759 HLKPDLLQPLTKSFVDTGMGLERLACVMQGLTSNYDSYEMNSLMEFIHSKAN 810



 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 105/563 (18%), Positives = 190/563 (33%), Gaps = 87/563 (15%)

Query: 269  IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT---------E 319
               +RV+VDH R+ +F ++DG+LP  +G    +R+++ RA   + L G           +
Sbjct: 888  DTAYRVLVDHSRALAFALSDGLLPGRQGLPLKIRQLIHRAFRASVLTGLDTEITTSGKLK 947

Query: 320  PLMMHLLPAL----CTEMGSAY--------PELIQA----KLLIEETLRSEDERFGKTLD 363
             L+  L+  +       + S +        P   ++       +E  +  E   F   L 
Sbjct: 948  SLLGALVSEVTKRDVLSLKSFFNTMATIRGPSCRKSDALTPEQMESIINEEVTWFALRLF 1007

Query: 364  RGLVLLDGVLSHLGKDEILNGDVAFKLYD-THG--LPLDIMQDILCARGLAGIDIISFNQ 420
                  +  L        L+ +   KL +  +G  +  D++    C  GL     I  N 
Sbjct: 1008 HMEKSFNRCLEECTDRRQLSAEQVTKLMNGDYGHHVSWDMICAQSCWAGLLPPLPIETNS 1067

Query: 421  --------ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
                        Q+  +   S  L +        S K           +  R   F   +
Sbjct: 1068 PSDKNKPLLFRSQKLNSNVISRQLHNLCVPFTDDSFKYNCYRKSEPDLNATRQYDFPDCE 1127

Query: 473  RKVL---------CQKPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYA 522
             K+L              I   +  +S V +++Q   +      +   +  +F++T F+ 
Sbjct: 1128 TKLLGLLAIGNKHTDYTLITKQSSSNSDVTSVIQNLCDASNNETANNLLGFIFEKTNFFT 1187

Query: 523  EAGGQLGDTGCAI--GDGIRLQITDVQKKA--------EGIFVH------HAIVERGILR 566
              GGQ  DTG        ++ Q+ +              G  +H      +  +    L 
Sbjct: 1188 SRGGQDADTGFIHYPSKILQFQVIETTFVPDPTSNSSTNGWIIHWCHKPDNLFLSLNNLN 1247

Query: 567  TEMSLVLTIDYQNRRQLSINHSATHLLHHAL------STILGSHVSQNGSCITPDGLRFD 620
             + S VL ID + R  L  +H+  HL   AL           S     G    P+     
Sbjct: 1248 FDQSFVLRIDKERRFNLMCSHTGQHLFTSALESLVLSRASNSSAFQHIGGTSHPNYFTLK 1307

Query: 621  VTH---SKPITSAEL----KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKY 672
                  +  +   +L    + +E     +I +N  +         AI           +Y
Sbjct: 1308 AAIIGSASELMQEDLGDFTRQLEQKCQKLINENGFISIWNTELAHAIKVKQIRYFPWEEY 1367

Query: 673  NDRVRVVSVEYED-----------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            + +VR V +  E              V S+ LCGGTH+    +++ + IV+    +  I+
Sbjct: 1368 SAKVRTVCITKEKHPFNDHELADFNSVISAELCGGTHLFELSDLLDIAIVAVKGRQKTIK 1427

Query: 722  RIEAITGQRARSHLMGQDEKLKS 744
                I G  A+S     DE ++ 
Sbjct: 1428 EFTCIFGHLAKSAHQCADELIQE 1450


>gi|259015923|gb|ACV89245.1| alanyl-tRNA synthetase [Ctenocephalides felis]
          Length = 214

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/216 (38%), Positives = 118/216 (54%), Gaps = 19/216 (8%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLW 140
           FFEMLGN+SFG YFK+     AW+LLT+ F L   RLY+T +  DE        E  ++W
Sbjct: 1   FFEMLGNWSFGDYFKKEICAWAWELLTQVFKLPADRLYVTYFGGDEASGLAADEECKQIW 60

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEI 200
             + G+ +  ++     DNFW M ETGPCGPCSE+ +D+           + +    +EI
Sbjct: 61  LDL-GVLSSHVLPGNMKDNFWEMGETGPCGPCSELHYDRI-GNRDVPHLVNMDDPDVLEI 118

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WNLVF+Q+ ++   E  +LPK  ID GMG ER+ +V+Q K  NYD DLF  L +A +  T
Sbjct: 119 WNLVFIQYNRETDGELKLLPKKHIDCGMGFERLVSVIQNKRANYDTDLFGPLFEAIQSGT 178

Query: 261 GMKYEGNN---------IVNHRVIVDHLRSSSFLIA 287
           G                 + +RV+ DH R+ +  +A
Sbjct: 179 GAPPYQGRIGKDDKDGIDMAYRVLADHARTITIALA 214


>gi|259015951|gb|ACV89258.1| alanyl-tRNA synthetase [Boreus brumalis]
          Length = 208

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/210 (40%), Positives = 117/210 (55%), Gaps = 19/210 (9%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EA 136
            HHTFFEMLGN+SFG YFK    + AW+LLT+ F L   RLY+T +  DE        E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKTEICEWAWELLTEVFKLPADRLYVTYFGGDEASGLEPDNEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            ++W ++ G+    ++  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KEIWLRL-GVPPSHVLPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RDVPELVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256
            +EIWNLVF+QF +++      LPK  ID GMG ER+ +V+Q K  NYD DLF  L +A 
Sbjct: 119 VLEIWNLVFIQFNRESDSSLKPLPKKHIDCGMGFERLVSVIQNKRANYDTDLFVPLFEAI 178

Query: 257 EQVT---------GMKYEGNNIVNHRVIVD 277
           ++ T         G +      + +RV+ D
Sbjct: 179 QKGTGAPQYQGRIGAEDSEGIDMXYRVLAD 208


>gi|289524521|ref|ZP_06441375.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502239|gb|EFD23403.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 244

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TPFYAE GGQ+GD G       +L++ D     + +  H   V+ G +  +      +D 
Sbjct: 1   TPFYAEKGGQVGDKGWIETSTGKLEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDL 60

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R  +  +H++TH++H AL+ +LG H+ Q GS ++P+  RFD TH   I+  ++  IE 
Sbjct: 61  SRRNAIRRHHTSTHIVHEALTRVLGPHIRQAGSYVSPNYFRFDFTHFDAISRDDIVKIEQ 120

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             N++I  N+ +     + E+A   GA A    KY DRVRV+ +       + + LCGG 
Sbjct: 121 IANEVIQANIKLNIFETSMEEAKKIGAKAFFDEKYGDRVRVIQIPG-----YCAELCGGL 175

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV++TG+I L+ IV E SI +G+RRI A+ G  A SH     + +K L     V  G++ 
Sbjct: 176 HVNATGDIGLIKIVEEESIGSGLRRITALAGMAAVSHYQELFDLVKDLTLISGVEAGSLK 235

Query: 758 GRVEEIWEE 766
            +  +++++
Sbjct: 236 EKFTDVFQD 244


>gi|70922133|ref|XP_734281.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56506876|emb|CAH86296.1| hypothetical protein PC301932.00.0 [Plasmodium chabaudi chabaudi]
          Length = 213

 Score =  231 bits (590), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 22/216 (10%)

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE---------EAFKLWKKISGLSA 148
           FG YFKE +I+ AWDLLT  + ++  RLY+T +  D+         EA K+W K   L  
Sbjct: 1   FGDYFKEESIEYAWDLLTNVYKINPDRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDE 58

Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            +I+     DNFW MAETGPCGPCSEI +D+           +++    +EIWN+VFMQ+
Sbjct: 59  KRILPFGMKDNFWEMAETGPCGPCSEIHYDRI-GNRDASDLVNKDDPSVLEIWNIVFMQY 117

Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV--------- 259
            +  K+    LP   IDTGMGLER+ ++LQ   +NYD DLF  + +  +++         
Sbjct: 118 NKDEKKNMNKLPSPCIDTGMGLERITSILQNVQSNYDTDLFTPIFKQIKEIFNDIPNYQG 177

Query: 260 -TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294
               +        +RVI DH+R ++  I+DG +P+N
Sbjct: 178 KINEEDPDKIDYAYRVISDHIRCATIAISDGCIPSN 213


>gi|307108974|gb|EFN57213.1| hypothetical protein CHLNCDRAFT_143654 [Chlorella variabilis]
          Length = 524

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 176/385 (45%), Gaps = 43/385 (11%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G  +H      G +R   ++   +DY  R ++  NH+ TH+L++AL  +LG HV Q GS 
Sbjct: 137 GYVLHLGRRPEGEIRVGEAVTTKVDYARRGRIMPNHTFTHVLNYALRKVLGDHVEQKGSI 196

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670
           + PD LRFD +++  + +A+L  +E      +A    V  + +    A A +G  A+ G 
Sbjct: 197 VLPDRLRFDFSNNGVVEAAKLAEVEALCQQYLASPQQVYKQEVPLAQAKAINGLRAVFGE 256

Query: 671 KYNDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            Y D VRVVSV             ED   +    CGGTH+ ST +     +++E  I  G
Sbjct: 257 TYPDPVRVVSVGRPVEQLVANPDAEDNLSYPIEFCGGTHLDSTAQARAFALLTEEGISKG 316

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---------------- 763
           +RRI A+TG+ A + +   D+   ++ +  ++  G + G V+ +                
Sbjct: 317 VRRIVAVTGEEAEAAIALADQLAAAVEAAGRLPVGEMQGEVKALTQAVSGAVIPTVRKAA 376

Query: 764 ------------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELK 810
                        EE +K    + +R +   V+       A   F+   +   +D+K ++
Sbjct: 377 LAEALQGLTRLILEEQKKAAAANKERAVAAAVDASDAAAAAGQKFLVTRLDVGLDAKAVQ 436

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
              +A+QKK  S  +M +  + E KA     V +D+  + +A D  +     LGG GG G
Sbjct: 437 EAWNAIQKKHPSLPVMFL-TAGEDKALAYAGVPQDISKQLSAGDWIKEVLGTLGGRGG-G 494

Query: 871 RPHMAQSGGPNGNKADQAIAGVASF 895
           +P  AQ  GP   K D+A+   ASF
Sbjct: 495 KPTNAQGTGPEVGKVDEALQAAASF 519



 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 7/118 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58
           V+ +R+TF+EFF    H  + SS ++P NDPTL+  N+GM  FK IF G   P       
Sbjct: 15  VARVRSTFVEFFVGKQHTAVSSSPVVPVNDPTLL--NAGMNQFKPIFLGTVDPNSDFAKL 72

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
           +     QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI  AW+LLT+
Sbjct: 73  KRAANSQKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAISWAWELLTE 130


>gi|269986161|gb|EEZ92474.1| Alanine--tRNA ligase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 614

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 117/604 (19%), Positives = 203/604 (33%), Gaps = 159/604 (26%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQA 60
           S+   I   F  FF+K GH+ +    ++      + F  + +  F      G  +P    
Sbjct: 61  SSYKDIWDGFSSFFKKKGHKEIKRYPVVARWRDDIYFVEAAIDDFAPYVIKGIAEPPANP 120

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
           +   Q C+R     ND++NVG + RH T F M    +F       YF + AI+   D + 
Sbjct: 121 LVVPQICLR----FNDINNVGLSGRHLTSFIMAEEAAFNTTKKKTYFDKEAIKYITDWIL 176

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
               + +  L                             T  ++ W  A     G C E 
Sbjct: 177 TGLKIKKEEL-----------------------------TFIEDAWVGAGY--AGSCLEY 205

Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235
           F                     +E+ N V+M++     +    +P  +ID G GLER + 
Sbjct: 206 F------------------AGGLELGNQVYMRYVINENK-LEEIPTKTIDMGAGLERWSW 246

Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV------------------------- 270
           V       Y+   F  +++  ++  G+ Y+   I                          
Sbjct: 247 VTNNTPTIYEA-TFPKVVEYIKKKVGVSYDDKKIKLAYEYIGKIDFEKTGIEEAIKAVAR 305

Query: 271 -----------------NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313
                                I DH R+    I DG LP+N G GY LR I+RRA+ + R
Sbjct: 306 DTKTNENEIKKMLSDMQAVYSIADHSRTLLVAIHDGALPSNVGGGYNLRNILRRALNFIR 365

Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373
              +   +   ++     E GS + EL +     +  +  E ER+    +R    +  +L
Sbjct: 366 SKNWDLDI-NDVIEEHKKEFGSWFEELKK--TDTKGVIDKEIERYNDFRERNYKFISSLL 422

Query: 374 SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433
                 + ++     +LY++ G+ +D ++ +             F               
Sbjct: 423 DK----KEIDEKQMIELYESRGITIDDIKTVAETEDKQITLPEKFYS------------- 465

Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493
                     I  + K K     +   + L  +K M  D K+   K          + + 
Sbjct: 466 ---------DINKAKKRKEEKKDYSFIEGLEKTKKMFYDEKLKTSK----------AKIM 506

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            IV+  +            ++ +QT FY E GGQ  D G          + +V+ K + I
Sbjct: 507 KIVKPDK------------IILNQTIFYPEMGGQKSDRGKIKNSN----VINVEIK-DDI 549

Query: 554 FVHH 557
            +H+
Sbjct: 550 IIHY 553


>gi|94971059|ref|YP_593107.1| threonyl/alanyl tRNA synthetase, SAD [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553109|gb|ABF43033.1| Threonyl/alanyl tRNA synthetase, SAD [Candidatus Koribacter
           versatilis Ellin345]
          Length = 403

 Score =  229 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/399 (22%), Positives = 173/399 (43%), Gaps = 20/399 (5%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVH 556
             +++  V   +  VV D+T FY  +GGQ+ DTG      D  +L++++V +  EG+  H
Sbjct: 17  AAVLDARVEDGRAIVVLDRTAFYPTSGGQIFDTGWMELEKDARKLRVSEVGETEEGVIQH 76

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           +          +  +   ID + RR     H+  H+L  A  ++    +      +  + 
Sbjct: 77  YVDTSDVETLKDGRVRGFIDVERRRDHMQQHTGQHVLSSAFESL--FEMKTVSFHMGAES 134

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
              D+  +K +   ++K  E   N++IA++ PV  +    ++A A G   +   +  +++
Sbjct: 135 CTIDLD-TKALAPEQVKKAEAVANEVIAEDRPVEIKYATVDEARAMGVRKIPPAE-REKL 192

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R++ ++           CGGTHV +TG+I  L I   +  + G  R+E + G RA +   
Sbjct: 193 RLIDIK-----DFDLNACGGTHVRATGQIGGLLIRKIAKEKQG-FRVEFVCGGRAVNTAR 246

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR--KLQLNVEDLSCHKIADV 794
              E L   A+       +V  +V ++ EE +       K   ++     D+   ++ D 
Sbjct: 247 RDFETLTDAATLFSSHIYDVPVQVRKLIEENKAGTKREHKLLEEVASLTADVMLAQLGDK 306

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +    ++ D   +K +   L ++    ++ L+G    +  +V+   T  L +      
Sbjct: 307 KVVRQFYTDRDMTFIKLLAQRLTRQG--SVVALLGCGGTQ-PAVIFAQTSGLPNDM--GG 361

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           L +  A V  GG GGG   MAQ G  + +K +  +  +A
Sbjct: 362 LMKE-ALVELGGRGGGNKDMAQGGATDASKIEAVLEKIA 399


>gi|254470257|ref|ZP_05083661.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960568|gb|EEA95764.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 284

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/267 (38%), Positives = 162/267 (60%), Gaps = 11/267 (4%)

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           +++ E   +E   N+I+ QN  V T +M  ++AI +GA AL G KY D VRVVS+     
Sbjct: 1   MSAEETTKVEALANEIVLQNGAVETSLMEVDEAIEAGAMALFGEKYGDEVRVVSMGTATT 60

Query: 683 -YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             + G  +S  LCGGTHV  TG+I L+ +VSE ++ AG+RRIEA+TG  AR +L  QD  
Sbjct: 61  GEKAGKSYSVELCGGTHVKRTGDIGLVTVVSEGAVAAGVRRIEALTGDEARKYLAEQDAL 120

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------N 795
           ++  A  LKVS  +V  R+  + +E +KL+   A+ K +L +        A V       
Sbjct: 121 MRETAGLLKVSAADVPARIAGLLDERKKLERELAEAKKKLAMGGGGSGGDAGVTEAGKFK 180

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            M+ ++  ++ K+LKSV D  +  I SG+++L+  +++ KA++++  T+D+ +  +AVDL
Sbjct: 181 LMARVLEGINPKDLKSVADEGKTAIGSGVVVLISKAEDGKAAIVVGSTKDVSETASAVDL 240

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNG 882
            R+ +  LGG GGGGRP MAQ+GGP+ 
Sbjct: 241 VRIGSAALGGRGGGGRPDMAQAGGPDA 267


>gi|291533809|emb|CBL06922.1| Alanyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 244

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 12/244 (4%)

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             +GA AL G KY D VRVV+V        S  LCGG+HV + G+I +  I+ ES + AG
Sbjct: 3   KKAGAMALFGEKYGDIVRVVTVPG-----FSMELCGGSHVKNIGQIGMFKIIGESGVAAG 57

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RRIEAITG+ A  ++  + + L++  + LK ++ N+  ++  + +E ++++   AK + 
Sbjct: 58  VRRIEAITGKAAIDYMNAKAKLLQTAITTLKTNESNLCDKIANLLQENKEMKAEIAKVQA 117

Query: 780 QLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           +    D     ++  +   VN +   I   +  EL++  D L  K     ++++G     
Sbjct: 118 ERAKADSNKLLMALKEYNGVNVIVGKIQATNMDELRNNADLLCNKFDKAGVVVLGAILND 177

Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893
           K + ++ V +D + R  +A  + +  A ++ GG GGGRP MAQ+GG    K + A A   
Sbjct: 178 KVNFVVKVNKDGVARGLHAGKIVKEVA-MVTGGNGGGRPDMAQAGGKQPEKLNDAFAKAH 236

Query: 894 SFLK 897
             ++
Sbjct: 237 EVIQ 240


>gi|145640918|ref|ZP_01796500.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274432|gb|EDK14296.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 150

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/150 (56%), Positives = 109/150 (72%), Gaps = 2/150 (1%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M   + IR +FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y  
Sbjct: 1   MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI  AW+ LT  +  
Sbjct: 61  ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120

Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSA 148
            L + +L++TVY+ D+EA+ +W K S  S 
Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKRSRCSC 150


>gi|326676062|ref|XP_003200495.1| PREDICTED: hypothetical protein LOC100535229 [Danio rerio]
          Length = 1296

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 127/258 (49%), Gaps = 32/258 (12%)

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEI 200
           +    +   +I+  +  DNFW M +TGPCGPCSEI +D+           S      +EI
Sbjct: 629 RHEHQMEESRILPGSMKDNFWEMGDTGPCGPCSEIHYDRIGG-RDAAHLVSMNDPNVLEI 687

Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260
           WNLVF+QF ++++     LPK SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ T
Sbjct: 688 WNLVFIQFNRESETVLKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGT 747

Query: 261 GMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311
           G +               + +RV+ DH R+ +  + DG  P N GRG     ++   +  
Sbjct: 748 GARAYTGKVGAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGRGPT--EMLLFGISS 805

Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371
            +                    G A+PEL +   ++++ +  E+ +F KTL RG  +LD 
Sbjct: 806 GQ--------------------GDAFPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDR 845

Query: 372 VLSHLGKDEILNGDVAFK 389
            +  LG+   +   + F 
Sbjct: 846 KIQSLGESTTIPEGMLFT 863



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 148 ADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL--VF 205
             +I+  +  DNFW M +TGPCGPCSEI +D            + +    +EIWNL   F
Sbjct: 58  ESRILPGSMKDNFWEMGDTGPCGPCSEIHYDHIGG-RDAAHLVNMDDPNKLEIWNLGDAF 116

Query: 206 MQFEQQNKQERFILPKM 222
            +  +     + I+ + 
Sbjct: 117 PELLKDPDMVKDIINEK 133



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP--FKNIFT-------GQ 53
             + IR  F++FF+ + H+ + SS+ IP +DPTL+F N+GM     K +         G 
Sbjct: 6   TAAQIREKFIDFFRCHEHQYVHSSATIPLDDPTLLFANAGMNQEFIKGLEMEESRILPGS 65

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM---LGNFSFGGYFKE 104
            K  +  +     C      H D    GR   H    +    L  ++ G  F E
Sbjct: 66  MKDNFWEMGDTGPCGPCSEIHYDHI-GGRDAAHLVNMDDPNKLEIWNLGDAFPE 118



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN 383
              +G A+PEL++   ++++ +  ++ +F KTL RG  +LD  +  LG+   + 
Sbjct: 109 IWNLGDAFPELLKDPDMVKDIINEKEAQFLKTLSRGRRILDRKIQSLGESTTIP 162


>gi|51893904|ref|YP_076595.1| alanyl-tRNA synthetase, truncated [Symbiobacterium thermophilum IAM
           14863]
 gi|51857593|dbj|BAD41751.1| alanyl-tRNA synthetase, truncated [Symbiobacterium thermophilum IAM
           14863]
          Length = 400

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 160/402 (39%), Gaps = 31/402 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G ++  +  G    VV +QT FY  +GGQ  D+G   G      + DV  + +G  VH 
Sbjct: 17  EGHVLSCSPVGDAWAVVLNQTCFYPASGGQPSDSGTLGGQ----PVLDVHAEPDGTIVH- 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             V  G L    ++V  +D+  R      H+  HLL  A   +L +        +  +  
Sbjct: 72  --VVGGPLS--GTVVGQVDWTRRLDHMEQHTGQHLLSAAFVHLLQADTVSW--HLGAEAS 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + +++ +++ +E   N +I   LPV   + + E+A             +  VR
Sbjct: 126 TVDIAV-ENLSAEQVEEVELTCNRLIRAGLPVHAHLCSPEEAHRFPLRK--PPTVSGPVR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           ++ +E  D        CGGTH+ S GE+ L+ I +    +  + R+  + GQRA    M 
Sbjct: 183 IIEIEGYDWS-----PCGGTHLRSIGELGLIKIKTWERYKRAV-RVTFLAGQRALHDYMA 236

Query: 738 QDEKLKSLASFLKVSQGNVV---GRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIA 792
            D   + LA  L +   ++     R +E     RK      +  L +  E L     +I 
Sbjct: 237 LDRMTRDLARRLSIGAADLPRWADRTQEEVTSLRKRVRTQQEELLAVEAERLLAGARRIG 296

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
               +        + EL+ +   +      G + + G  +     ++     DL  R + 
Sbjct: 297 PARVVRQTFGGRPADELRLLAAKVAGTP--GCVAVFGT-RGALPQLIFHRAADL--RLDV 351

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             +      ++  G GGG P  AQ GG    + ++A+    S
Sbjct: 352 GQILSAVLPII-DGKGGGSPVQAQGGGTRPERLEEALDAAVS 392


>gi|207108302|ref|ZP_03242464.1| alanyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 334

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 105/348 (30%), Positives = 166/348 (47%), Gaps = 24/348 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            K   G+      +++  L+    ++  +    R +++ +HSATHLL  AL  +LGSHVS
Sbjct: 3   TKNFFGLNFSLLEIKKA-LKKGDQIIAQV-SDERLEIAKHHSATHLLQSALREVLGSHVS 60

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           Q GS +    LRFD +H K +   EL+ +ED VN  I ++L      M    A   GA A
Sbjct: 61  QAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKGALA 120

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L   KY + VRVVS +       S  LCGG HV +TG I    IV ES + +G+RRIEA+
Sbjct: 121 LFSEKYAENVRVVSFK-----EASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRIEAV 175

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G+        ++++LK+  + LK +  +V+  + ++ E  +  Q             DL
Sbjct: 176 CGKAFYQLAKEENKELKNAKTLLKNN--DVIAGINKLKESVKNSQKAPVSM-------DL 226

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              KI  VN +  ++ + D   +K ++D L+ K +  + M+     E + ++   V    
Sbjct: 227 PVEKIHGVNLVVGVVEQGD---IKEMIDRLKSKHERLLAMVFKKENE-RITLACGVKNAP 282

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                A   A   A++LGG GG GR   A +GG +      A+    +
Sbjct: 283 ---IKANVWANEVAQILGGKGG-GRGDFASAGGKDIENLQAALNLAKN 326


>gi|189531576|ref|XP_001922082.1| PREDICTED: hypothetical protein LOC559142 [Danio rerio]
          Length = 725

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 129/254 (50%), Gaps = 29/254 (11%)

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
           G++  +I+  +  DNFW M +TGPCGPCSEI +D+           + +    +EIWNLV
Sbjct: 45  GMNQSRILPGSMKDNFWEMGDTGPCGPCSEIHYDRIGG-RDAAHLVNMDDPNELEIWNLV 103

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           F+QF ++++     L K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG + 
Sbjct: 104 FIQFNRESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARA 163

Query: 265 EGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                         + +RV+ DH R+ +  + DG  P N GRG +              L
Sbjct: 164 YTGKVSAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGRGLL-------------SL 210

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
           G+       +        G A+PEL +   ++++ +  E+ +F KTL RG  +LD  +  
Sbjct: 211 GFAVECTCTVAR------GDAFPELRKDPYMVKDIINEEEAQFLKTLSRGRRILDRKIQS 264

Query: 376 LGKDEILNGDVAFK 389
           LG+   +   + F 
Sbjct: 265 LGESTTIPEGMLFT 278



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
            + IR  F++FF+++ H+ + SS+ IP +DPTL+F N+GM     I  G  K  +  + 
Sbjct: 6  TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQ-SRILPGSMKDNFWEMG 64

Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
              C      H D    GR   H    + 
Sbjct: 65 DTGPCGPCSEIHYD-RIGGRDAAHLVNMDD 93


>gi|2654772|gb|AAC32529.1| alanyl-tRNA synthase [Mycoplasma hyopneumoniae]
          Length = 186

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 118/181 (65%), Gaps = 6/181 (3%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +++FF++  H  + S  L+P ND +L++ NSG+   K+ FTG++ P  + + 
Sbjct: 5   SANEIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLV 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122
             QK +R     ND++NVG T+RHHT FEMLGNFS G YFK  AI  A++ LTK+  LD 
Sbjct: 65  NSQKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDP 120

Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182
           + L+IT YD D+  F+ WK + G S +K+I+ +   NFW + + GPCGPCSEI+FD+G  
Sbjct: 121 KNLFITYYDGDDITFEKWKSL-GFSNEKLIKGSKKTNFWDLGQ-GPCGPCSEIYFDRGPK 178

Query: 183 I 183
            
Sbjct: 179 F 179


>gi|304316619|ref|YP_003851764.1| threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778121|gb|ADL68680.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 394

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/420 (24%), Positives = 176/420 (41%), Gaps = 37/420 (8%)

Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541
           +   +       A V     V         E++ D+T FY E+GGQ  DTG   G    +
Sbjct: 4   MYYYDSYKRSFTANVIDASFVN-----GYYEIILDETYFYPESGGQPADTGTIDG----I 54

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++ +V  K   +      + +       S+   ID++ R      HS  HLL      + 
Sbjct: 55  KVDNVVLKNNKVIHMLKEIPKNK-----SVFCEIDWEKRFDNMQQHSGQHLLSAVFYKLY 109

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +        I  D     +T++  ++ +EL   E+  N II  NLP+ T  ++ E+ I 
Sbjct: 110 NAET--ESFSIGDDCSHITLTNNN-LSESELAVAEEEANKIIYSNLPISTYFVDNEELIK 166

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                    K N+ +R+V ++         + CGGTHV S GEI L+ I +    + GI 
Sbjct: 167 LPLRK--KPKVNENIRIVEIK-----DIDYSPCGGTHVKSLGEIGLIKIRNYEKSKKGI- 218

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK--- 778
           RIE + G RA      ++  +  L S L V +  ++ +V +++ E ++L+    K K   
Sbjct: 219 RIEFLCGLRAIKDYNVKNNCINMLISLLSVKEDEILDKVNKLFLENKELKKELNKMKENI 278

Query: 779 LQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           L    E L    I       ++   ++ D KEL+++   + K  + GI+ +V  S  K A
Sbjct: 279 LLYEAEKLISESIDLKKYKLVTKTFNDRDLKELRTLSQIVTK--EKGIVCIVC-SISKNA 335

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +++I  +ED+    N          ++  G GGG   M Q  G      D+A+      +
Sbjct: 336 NIVISRSEDVNININ--SFFNSVLDII-DGNGGGNQKMCQGCGK-VENIDRALEKAIDII 391


>gi|67922592|ref|ZP_00516098.1| Alanine--tRNA ligase [Crocosphaera watsonii WH 8501]
 gi|67855520|gb|EAM50773.1| Alanine--tRNA ligase [Crocosphaera watsonii WH 8501]
          Length = 269

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/272 (31%), Positives = 138/272 (50%), Gaps = 13/272 (4%)

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IED +N  IA+       +M  E A   GA A+ G KY   VRV+ V        S  L
Sbjct: 1   EIEDLINTWIAEAHDTEIEVMPIETAKEKGAIAMFGEKYGAEVRVIDVPG-----VSMEL 55

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV +T EI L  I+SES I +G+RRIEA+ G     +L  ++  +K L    K+  
Sbjct: 56  CGGTHVRNTAEIGLFKIMSESGISSGVRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKP 115

Query: 754 GNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKE 808
             +  R+  +  E +  Q      K++L +   D   ++   +     ++S   E+D+K 
Sbjct: 116 EEISDRITTLQSELKTTQKELEGVKQELAIAKSDQLLNEAESIGEFKLLVSDMGEMDAKA 175

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGG 866
           L++  + LQ+K+  G ++L  I  E K S++   ++ +    +  A       AK+ GGG
Sbjct: 176 LQTAAERLQQKLGEGAVILGSIPSEGKVSLVAAFSKKVNKEKQLQAGKFIGQIAKICGGG 235

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG GRP++AQ+GG + +K  +A++     LK+
Sbjct: 236 GG-GRPNLAQAGGRDPSKLSEALSTAKQQLKE 266


>gi|321442109|gb|ADW85469.1| ala-tRNA synthetase [Urodus decens]
          Length = 235

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++     +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD DLF  L +A +  TG++               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDLFMPLFKAIQXGTGVRXYSGKVGADDSDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAIRYASEKLNAKPGFFGTLVWTVVAILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I + +  E+ +F KTL RG  LL+  +  L   +++ GDVA++L
Sbjct: 180 DVFPEIKKDPDSIIQIINEEEIQFLKTLTRGRNLLNRTMEKLSNSKVVPGDVAWRL 235


>gi|321442095|gb|ADW85462.1| ala-tRNA synthetase [Podosesia syringae]
          Length = 235

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF ++      +LPK  I
Sbjct: 1   ETGPCGPCSELHYDRIGG-REAAHLVNMDDPDVLEIWNLVFIQFNREADGSLKLLPKKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---------IVNHRVI 275
           D G+GLER+ +V+Q K  NYD D F  L +A E+ TG +               + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRANYDTDFFTPLFEAIEKGTGARPYSGKVGEEDVDGIDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  ++DG  P N GRGYVLRRI+RRA+ Y +  L         L+  +   +G
Sbjct: 120 ADHARTLTIALSDGGCPDNTGRGYVLRRILRRAIRYSSEKLNGKPGFFSSLVQTVVEILG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             +PE+ +    I E +  E+ +F KTL RG  LL+  +  L   + + GDVA++L
Sbjct: 180 DVFPEITKDPQSIIEIINEEELQFLKTLSRGRNLLNRTIEKLNGSKTIPGDVAWRL 235


>gi|323704225|ref|ZP_08115804.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536291|gb|EGB26063.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 395

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/405 (23%), Positives = 178/405 (43%), Gaps = 32/405 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            ++++  V+ +  EV+ D+T FY E+GGQ  D+G   G    +++ +V  + + +     
Sbjct: 17  AKVIDINVTNEYCEVILDKTYFYPESGGQPADSGFIDG----IKVENVFLRDDKVIHVLK 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                       ++  ID++ R      HS  HLL      +  +        I  D   
Sbjct: 73  T-----PPKNDLVICEIDWEKRFDNMQQHSGQHLLSAVFYKLFNAETDS--FSIGDDSSH 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             +T+S  ++   LK +E   N +I  NLPV +  +  +D            K ++ +R+
Sbjct: 126 ITLTNSN-LSEDNLKEVEIETNRLIYLNLPVTSYFVKDDDLKKLPLRKK--PKVDENIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V ++         + CGGTHV S GEI ++ I      + G+ RIE + G RA +  + +
Sbjct: 183 VEIK-----DFDYSPCGGTHVKSLGEIGIVKIKKFERTKKGL-RIEFVCGFRAFNDYLKK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKI--AD 793
           +  + SL + L   +  ++ +V +I +E ++L+    K K   LQ   E L    +   +
Sbjct: 237 NNYINSLITSLSAKEEEILEKVNKILDENKELKKELIKLKDNILQYEAEKLVAESVNLKN 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
              ++ I ++ D KEL+ V+  +  K +  + +L GI+     +++I  ++D+    N  
Sbjct: 297 FKLVTKIFNDRDMKELR-VLSQIITKGKGFVCILGGITDCG--NIVISRSDDVDIDIN-- 351

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              +    V+  G GGG   + Q  G    K   A+    + + K
Sbjct: 352 SFFKEILDVIE-GNGGGNQKICQGSGK-VEKVGLALDKAVNLISK 394


>gi|297724655|ref|NP_001174691.1| Os06g0245800 [Oryza sativa Japonica Group]
 gi|52076744|dbj|BAD45655.1| alanyl-tRNA synthetase-like [Oryza sativa Japonica Group]
 gi|255676887|dbj|BAH93419.1| Os06g0245800 [Oryza sativa Japonica Group]
          Length = 326

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 88/289 (30%), Positives = 150/289 (51%), Gaps = 21/289 (7%)

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           +  R+IE +NLVFMQ+ +++      L + +IDTGMGLERMA +LQ+  NNY+ DL   +
Sbjct: 39  DDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNNYETDLIFPI 98

Query: 253 IQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309
           I+ +  +  + Y   +     N ++I DH+R+  +LI+DG++P+N GRGYV+RR++RR +
Sbjct: 99  IEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGYVVRRLIRRVV 158

Query: 310 CYARLLGY--------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
              RL+G             +  L     +      P++   +  I   L+ E+ RF +T
Sbjct: 159 RTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEIDPDVESRRKSILGELQREELRFVQT 218

Query: 362 LDRGLV-------LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414
           L+RG                + G    L+G   F LYDT+G P++I  +I   RG+  +D
Sbjct: 219 LERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITAEISGERGVI-VD 277

Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +  F+  +E QR +++A    +      +    + +    T+F+G D +
Sbjct: 278 MKGFDMEMENQRKQSQAAHNVVKLSVGNET--EIVKSIPDTEFLGSDTI 324


>gi|296115011|ref|ZP_06833655.1| alanyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978473|gb|EFG85207.1| alanyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 266

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 97/259 (37%), Positives = 156/259 (60%), Gaps = 6/259 (2%)

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVS 700
           I +N  V TR M  ++AI  GA AL G KY D VRVVS+   + G    S  LCGGTHV 
Sbjct: 3   IRENTEVTTRHMTPDEAIEQGAMALFGEKYGDEVRVVSMGGPEDGRAAWSIELCGGTHVR 62

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG+I L  I +E+ + +G+RRIEA+TG+ A +  +  +++L  +A+ ++V+      R+
Sbjct: 63  RTGDIGLFRITAENGVSSGVRRIEAVTGKAAETAAVTTEQRLFQMAAMMRVTPAEAPERL 122

Query: 761 EEIWEEYR--KLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQ 817
             + EE R  + QL   +RKL    +       +A  +F++  + ++  KELK + D+L+
Sbjct: 123 AALLEERRVMERQLSDLQRKLAAGGDGTPKVEDVAGTSFVARNVGDLPPKELKPLADSLR 182

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           K+I SG++ LV  + + K S+++ VT D  ++ +AV L R+++  +GG GGGGR  MAQ+
Sbjct: 183 KEIGSGVVALVSTA-DGKGSIVVAVTTDRAEQVDAVALVRIASPAMGGKGGGGRRDMAQA 241

Query: 878 GGPNGNKADQAIAGVASFL 896
           GGP+ +KA  A+  + + L
Sbjct: 242 GGPDISKAQAALDAIRAAL 260


>gi|213022106|ref|ZP_03336553.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 147

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 109/143 (76%), Gaps = 2/143 (1%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
            + + IR  FL+FF   GH+++ SSSL+P NDPTL+FTN+GM  FK++F G +K  Y   
Sbjct: 3   KSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 62

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119
           TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+LLT    F 
Sbjct: 63  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFA 122

Query: 120 LDQRRLYITVYDEDEEAFKLWKK 142
           L + RL++TVY+ D+EA+++W+K
Sbjct: 123 LPKERLWVTVYETDDEAYEIWEK 145


>gi|199581824|gb|ACH89583.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581826|gb|ACH89584.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581828|gb|ACH89585.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581830|gb|ACH89586.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581832|gb|ACH89587.1| alanyl-tRNA synthetase [Alpheus schmitti]
 gi|199581834|gb|ACH89588.1| alanyl-tRNA synthetase [Alpheus schmitti]
          Length = 190

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKPSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYAGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|229018813|ref|ZP_04175660.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1273]
 gi|229025054|ref|ZP_04181482.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1272]
 gi|228736260|gb|EEL86827.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1272]
 gi|228742434|gb|EEL92587.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1273]
          Length = 411

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + +++V ++ +G   H  + +         +
Sbjct: 42  YVVLNETAFYPTGGGQPNDTGTLNG----IPVSNV-EEVDGEIRHFIVEQLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKIDWERRFDHMQQHTAQHILSAAFWD--HFNIPTIGFHLGKETITIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + LQ ++ K       E L    KI     +S + +    
Sbjct: 262 SEADIPAKVSQLLTSQKENEKALQTMNEKLLFAEANELLQQPAKIHGGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    N   L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMN--TLLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 408


>gi|149236427|ref|XP_001524091.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146452467|gb|EDK46723.1| alanyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 402

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/401 (26%), Positives = 172/401 (42%), Gaps = 44/401 (10%)

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              + +VQ    G  +H      G L     +V   D   R  +  NH+ TH+L++AL  
Sbjct: 2   EFNVENVQ-VYGGYVLHTGYFVEGSLALGDEVVAAYDELRRWPIRNNHTGTHVLNYALRE 60

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            LG  V Q GS +  + LRFD +H + +T  EL+ +E   N  I +N  V  + +   DA
Sbjct: 61  TLGEGVDQKGSLVAQEKLRFDFSHKQALTIKELEQVEQLSNQYIKENKQVYYKDVPLADA 120

Query: 660 IA-SGAAALLGTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIML 707
            + +G  A+ G  Y D VRVVS+           E E+    S   CGGTHV+ T EI  
Sbjct: 121 RSINGLRAVFGETYPDPVRVVSIGVPVETLLKNPENEEWRSISIEFCGGTHVARTSEIKD 180

Query: 708 LYIVSESSIRAGIRRIEAITGQRA-------------RSHLMG------QDEKLKSLASF 748
           L I  ES I  GIRRI A+TG  A              + +        ++ KLK     
Sbjct: 181 LVITEESGIAKGIRRIVAVTGHDAHAVQRIAKEFDEKLNEVEKMENGPFKESKLKEFGVA 240

Query: 749 LKVSQGNVVGRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF-M 797
           LK    +V+ +           +   +  + +Q   +K+ L +  + L   K  + +F +
Sbjct: 241 LKKLTISVLDKQKLTDKFGKIDKSYKDHLKAIQKEESKKTLDVVKKWLDGTKEEECDFLV 300

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
           + I    ++K +      ++K+ ++  + L     ++ A    +    +    N  +LA 
Sbjct: 301 ARIPIGANAKAITEAFTFVKKQNRAKSLYLFTGESDRVAHGCYISDAAIAKGLNGSELAA 360

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + K + GG  GG+ ++ Q  G N  + D A+  V    K+
Sbjct: 361 AAVKFV-GGKAGGKGNIVQGMGDNDKQVDAAVEEVTRLFKE 400


>gi|199581698|gb|ACH89520.1| alanyl-tRNA synthetase [Alpheus xanthocarpus]
 gi|199581700|gb|ACH89521.1| alanyl-tRNA synthetase [Alpheus xanthocarpus]
 gi|199581702|gb|ACH89522.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581704|gb|ACH89523.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581706|gb|ACH89524.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581708|gb|ACH89525.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581710|gb|ACH89526.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581712|gb|ACH89527.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
 gi|199581714|gb|ACH89528.1| alanyl-tRNA synthetase [Alpheus cristulifrons]
          Length = 190

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ +VLQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKNLPKKHIDCGMGLERLVSVLQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|153214926|ref|ZP_01949709.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124114999|gb|EAY33819.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 149

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/145 (59%), Positives = 104/145 (71%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
             +   +R  FL FF+  GH+++ SSSL+P NDPTL+FTN+GM  FK+ F G EK  Y  
Sbjct: 2   FMSTDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTR 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT    L
Sbjct: 62  ATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQL 121

Query: 121 DQRRLYITVYDEDEEAFKLWKKISG 145
            + RL +TVY+ D+EAF +W K S 
Sbjct: 122 PKERLLVTVYETDDEAFDIWNKKSR 146


>gi|199581644|gb|ACH89493.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581648|gb|ACH89495.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581650|gb|ACH89496.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581654|gb|ACH89498.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581656|gb|ACH89499.1| alanyl-tRNA synthetase [Alpheus millsae]
          Length = 190

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/190 (38%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++     ILPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKILPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581736|gb|ACH89539.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581738|gb|ACH89540.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581740|gb|ACH89541.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581742|gb|ACH89542.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581744|gb|ACH89543.1| alanyl-tRNA synthetase [Alpheus malleator]
 gi|199581746|gb|ACH89544.1| alanyl-tRNA synthetase [Alpheus malleator]
          Length = 190

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +    I+  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYIKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|189531570|ref|XP_001922060.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Danio rerio]
          Length = 305

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 32/254 (12%)

Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
            +   +I+  +  DNFW M +TGPCGPCSEI +D+           + +    +EIWNLV
Sbjct: 55  RMEESRILPGSMKDNFWEMGDTGPCGPCSEIHYDRIGG-RDAAHLVNMDDPNVLEIWNLV 113

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
           F+QF ++++     L K SIDTGMGLER+ +VLQ K +NYD DLF    +A ++ TG + 
Sbjct: 114 FIQFNRESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARA 173

Query: 265 EGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                         + +RV+ DH R+ +  + DG  P N GRG                 
Sbjct: 174 YTGKVSAEDTDGIDMAYRVLADHARTITIALYDGGRPDNTGRG----------------- 216

Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375
               P  M L      + G A+PEL +   ++++ +  E+ +F KTL R   +LD  +  
Sbjct: 217 ----PTEMLLFGISSRQ-GDAFPELRKDPDMVKDIINEEEAQFLKTLSRRRRILDRKIQS 271

Query: 376 LGKDEILNGDVAFK 389
           LG+   +   + F 
Sbjct: 272 LGESTTIPEGMLFT 285



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN---------IFTGQ 53
             + IR  F++  +++ H+ + SS+ IP +DPTL+F N+GM  F N         I  G 
Sbjct: 6   TAAQIREKFIDLIRRHEHQYVHSSATIPLDDPTLLFANAGMNQFVNVKGRMEESRILPGS 65

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
            K  +  +     C      H D    GR   H    + 
Sbjct: 66  MKDNFWEMGDTGPCGPCSEIHYD-RIGGRDAAHLVNMDD 103


>gi|199581836|gb|ACH89589.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581838|gb|ACH89590.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581840|gb|ACH89591.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581842|gb|ACH89592.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581844|gb|ACH89593.1| alanyl-tRNA synthetase [Alpheus umbo]
 gi|199581846|gb|ACH89594.1| alanyl-tRNA synthetase [Alpheus umbo]
          Length = 190

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581670|gb|ACH89506.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581672|gb|ACH89507.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581674|gb|ACH89508.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581676|gb|ACH89509.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581680|gb|ACH89511.1| alanyl-tRNA synthetase [Alpheus estuariensis]
          Length = 190

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKSLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581748|gb|ACH89545.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581750|gb|ACH89546.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581752|gb|ACH89547.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581754|gb|ACH89548.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581756|gb|ACH89549.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581758|gb|ACH89550.1| alanyl-tRNA synthetase [Alpheus nuttingi]
 gi|199581760|gb|ACH89551.1| alanyl-tRNA synthetase [Alpheus nuttingi]
          Length = 190

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|163848562|ref|YP_001636606.1| threonyl/alanyl tRNA synthetase SAD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526497|ref|YP_002570968.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus sp. Y-400-fl]
 gi|163669851|gb|ABY36217.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450376|gb|ACM54642.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus sp. Y-400-fl]
          Length = 410

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 159/381 (41%), Gaps = 30/381 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           V  DQ+ FY E GGQ  D G          R  + DVQ    G+  H       +     
Sbjct: 33  VALDQSAFYPEGGGQPADQGWLSAATDPDRRWPVIDVQ-SDNGVVWHILATGVQLPEPGT 91

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   I+++ R      H   H+L  A      +        ++   +  D++  + ++ 
Sbjct: 92  IVTGQINWERRFDHMQQHCGQHILTAAFIATCNAPTVS--FHLSERSVTIDLSIGE-LSL 148

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            ++++ E   N  +  NLP+  R ++  +              +D VRVVS+     G  
Sbjct: 149 DQVQAAEAWANRAVWANLPIHARFVSPTELAQIPLRK--PPTVSDAVRVVSI-----GDI 201

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
             + CGGTH + +GE+  + ++     + G+ R+E + G R  + L  +D  +++ A+ L
Sbjct: 202 DHSACGGTHPARSGEVGAIAVLGWGR-QRGLIRVEFVCGNRVITALHERDTAVRTAAAAL 260

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLI--HAKRKLQLNVEDLSCHKIADVNF---MSHIISEV 804
            V    +   V  + E  + LQ      +R+L          +   VN    ++  +   
Sbjct: 261 SVGWAELPQTVNRLQETQQSLQRELRQTQRELDALRAAQWYAQTPPVNGRRIVTATLPAA 320

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK--V 862
           D++ L+++   + + +  GI ++ G S+  +  +++   ED     +A D  ++ A    
Sbjct: 321 DAERLRTIAGFIAE-LPGGIAIVAGGSE--RPQIVVACAED-----SAGDARQILAAGMA 372

Query: 863 LGGGGGGGRPHMAQSGGPNGN 883
           + GG GGG   +AQ GG + +
Sbjct: 373 VLGGRGGGNARLAQGGGGSPD 393


>gi|71051710|gb|AAH98738.1| Aars protein [Rattus norvegicus]
          Length = 369

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 152/362 (41%), Gaps = 49/362 (13%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  NH+ATH+L+ AL ++LG    Q GS + PD LRFD T    +++ ++K  E+ VN +
Sbjct: 2   VMSNHTATHILNFALRSVLGD-ADQKGSLVAPDRLRFDFTAKGAMSTEQIKKTEEIVNGM 60

Query: 643 IAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHS 690
           I    PV T       A A  G  A+    Y D VRVVS+               G + S
Sbjct: 61  IEAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTS 120

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL- 749
              CGGTH+ ++       IV+E +I  GIRRI A+TG  A+  L   +   KSL++   
Sbjct: 121 VEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLSAMEV 180

Query: 750 -----KVSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVEDLSCHKIADVN- 795
                     +V   + ++ E        +++K +     + L+  ++DL     ADV  
Sbjct: 181 KVKAQSAPNKDVQKEIADLGEVLATAVIPQWQKDEQRETLKSLKKVMDDLDRASKADVQK 240

Query: 796 ------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKA 836
                              +  + S   +K L   +   +        ML  +  E  K 
Sbjct: 241 RVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEAGKI 300

Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
           + L  V ++  +R   A +  +  +  L  G GGG+   AQ+ G N     +A+    SF
Sbjct: 301 TCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKDMSAQATGKNVGCLQEALQLATSF 359

Query: 896 LK 897
            +
Sbjct: 360 AQ 361


>gi|199581658|gb|ACH89500.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581660|gb|ACH89501.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581662|gb|ACH89502.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581664|gb|ACH89503.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581666|gb|ACH89504.1| alanyl-tRNA synthetase [Alpheus colombiensis]
 gi|199581668|gb|ACH89505.1| alanyl-tRNA synthetase [Alpheus colombiensis]
          Length = 190

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQRLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581646|gb|ACH89494.1| alanyl-tRNA synthetase [Alpheus millsae]
 gi|199581652|gb|ACH89497.1| alanyl-tRNA synthetase [Alpheus millsae]
          Length = 190

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKXLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581716|gb|ACH89529.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581722|gb|ACH89532.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581724|gb|ACH89533.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581726|gb|ACH89534.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581728|gb|ACH89535.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581730|gb|ACH89536.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581732|gb|ACH89537.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581734|gb|ACH89538.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
          Length = 190

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +    I+  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILEDAFPEVAKDPEYIKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|295704343|ref|YP_003597418.1| Threonyl and Alanyl tRNA synthetase domain-containing protein
           [Bacillus megaterium DSM 319]
 gi|294802002|gb|ADF39068.1| Threonyl and Alanyl tRNA synthetase domain protein [Bacillus
           megaterium DSM 319]
          Length = 391

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 156/400 (39%), Gaps = 28/400 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E++E         +    T FY E GGQ  D G   G    + + DV ++  G   H 
Sbjct: 16  ETEVIETRSLSNGYALTLKHTAFYPEGGGQPSDYGNIAG----IDVKDVYEE-NGEVYHI 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L  + ++   ID+  R      HS  HLL   L      H       +  + +
Sbjct: 71  VD----TLPEQTNVTCEIDWHRRFDHMQQHSGQHLLSALLIDTYDIHTVS--FHLGSEAV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + ++  +L  IE  VND I  N  + T  + +ED        +   + ++ VR
Sbjct: 125 SIDLNVPQ-LSHEQLLHIEKVVNDAIYSNRHIKTYEVTKEDLHTLALRKVPDLE-DEVVR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  D        C GTHV+  GE+ L+ +      + G  R+    G RA +    
Sbjct: 183 IVEIEGIDVS-----ACCGTHVNQIGELGLIKLTKTEK-QRGNTRLFFKCGMRALADYQQ 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNF 796
             E +  L++    S+  VV R++++  E ++LQ    + K +             + +F
Sbjct: 237 SQEIVAELSNKFSTSRELVVERIKKLETEQKELQKQLEELKNENAAYLASELEAKKEGSF 296

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           + H       K+ +++   L +    G  +L   S ++K  +    +E         +L 
Sbjct: 297 LCHHFENRTLKDGQALTKQLLQTP--GTTLLFAFSSDQKVLLAHSGSE-----VKCGELY 349

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +    +  G GGGG P  AQ+   +    +  ++ V   +
Sbjct: 350 KELLPLYDGKGGGG-PKQAQASFSSSENMNAFLSAVKEKI 388


>gi|262301365|gb|ACY43275.1| ala-tRNA synthetase [Plathemis lydia]
          Length = 238

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 131/239 (54%), Gaps = 14/239 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++      LP   I
Sbjct: 1   ETGPCGPCSELHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESNGSLKSLPSKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  +  A ++ T         G + +    + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFMPIFDAIQKGTNAPQYTGKVGAEDKDGKDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RRA+ YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRAIRYATEKLNAKPQFFGSLVHVVVDLLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390
             +PEL +    I + +  E+E+F KTL RG  LL+  +  L       +L G+VA++L
Sbjct: 180 DTFPELKKDVSGIIDIINEEEEQFLKTLTRGRNLLNRTVEKLTGGASGTVLPGEVAWRL 238


>gi|229174283|ref|ZP_04301816.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus MM3]
 gi|228609140|gb|EEK66429.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus MM3]
          Length = 411

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 159/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H  + +         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTL-NDIDVINVEE----IHGEIRHFIVEKLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-AENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+ T  MN E+A A            + +RVV +E      +  
Sbjct: 150 VEKAVHIANKIVFENHPIRTLWMNLEEAKALPLRK--EPTLTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLMGHQQQIIKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQQPTEIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSTIITEQQEHAITYFV-IENEDKLQCILACGKTVTLEMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKALMTGDEFLNQLVSSLQ 408


>gi|199581718|gb|ACH89530.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
 gi|199581720|gb|ACH89531.1| alanyl-tRNA synthetase [Alpheus cf. malleator CRH-2008]
          Length = 190

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +    I+  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILZDAFPEVAKDPEYIKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|229168340|ref|ZP_04296065.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH621]
 gi|228615166|gb|EEK72266.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH621]
          Length = 411

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + +V++    I   H IVE+  +     +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----IPVINVEEVDGEI--RHFIVEQLHME---EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+  R      H+A H+L  A       ++   G  +  + +  D+  +  +++  
Sbjct: 93  EGKIDWDRRFDHMQQHTAQHILSAAFWD--HFNIPTIGFHLGKETITIDLE-TANLSTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +       +  
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRK--EPTMTENIRVVIIAN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + I+     + GI R+  I G R+   +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKHTGEVGPIQILGWERNKGGI-RLTFIAGWRSLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDS 806
           S  ++  +V ++    ++ +        +L      +L     +I     +S   +    
Sbjct: 262 SDTDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQSEEIHAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E+K   ++   + +    N   L + +   + G 
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEEKLQCILACGKAVTLDMN--TLLKDALPSIEGK 378

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG + + A+ GG      D+ +  + S L+
Sbjct: 379 GGGNKKN-ARGGGKAIMSGDEFLDQLVSSLQ 408


>gi|199581678|gb|ACH89510.1| alanyl-tRNA synthetase [Alpheus estuariensis]
 gi|199581682|gb|ACH89512.1| alanyl-tRNA synthetase [Alpheus estuariensis]
          Length = 190

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKSLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDXVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|13186176|emb|CAC33486.1| alanyl-tRNA synthetase [Legionella pneumophila]
          Length = 147

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + S IR  FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E   YQ 
Sbjct: 1   MKS-SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
             T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AIQ AW+ LT+   +
Sbjct: 60  AATAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHI 119

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSA 148
              RL++TVY ED EA  +W K   +S 
Sbjct: 120 PAERLWVTVYKEDLEAEDIWLKEMKVSP 147


>gi|199581614|gb|ACH89478.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
          Length = 190

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLXGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|262301359|gb|ACY43272.1| ala-tRNA synthetase [Ischnura verticalis]
          Length = 238

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 129/239 (53%), Gaps = 14/239 (5%)

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF +++     +LP   I
Sbjct: 1   ETGPCGPCSELHFDRIGG-RDAAHLVNMDDPDVLEIWNLVFIQFNRESDGSLKLLPHKHI 59

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT---------GMKYEGNNIVNHRVI 275
           D G+GLER+ +V+Q K +NYD DLF  +  A ++ T         G        + +RV+
Sbjct: 60  DCGLGLERLVSVIQNKRSNYDTDLFMPIFDAIQKGTNAAPYTGRVGADDVDGKDMAYRVL 119

Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334
            DH R+ +  +ADG  P N GRGYVLRRI+RR + YA   L         L+  +   +G
Sbjct: 120 ADHARTLTIALADGGRPDNTGRGYVLRRILRRGIRYATEKLNAKPKFFGTLVHTVVELLG 179

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390
             +PEL +    I + +  E+E+F KTL RG  LL+  +  L       +L GDVA++L
Sbjct: 180 DTFPELSKDVSGIIDIINEEEEQFLKTLSRGRNLLNRTVEKLTGATSGSVLPGDVAWRL 238


>gi|199581612|gb|ACH89477.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581616|gb|ACH89479.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581620|gb|ACH89481.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581622|gb|ACH89482.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581624|gb|ACH89483.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
 gi|199581626|gb|ACH89484.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581628|gb|ACH89485.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581632|gb|ACH89487.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581634|gb|ACH89488.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581638|gb|ACH89490.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581640|gb|ACH89491.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|229012797|ref|ZP_04169966.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides DSM 2048]
 gi|228748478|gb|EEL98334.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides DSM 2048]
          Length = 411

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + +++V ++  G   H  I +         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----IPVSNV-EEVNGEIRHFIIEQLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A H+L  A       ++   G  +  + +  D+  +  +++  
Sbjct: 93  EGKIDWERRFDHMQQHTAQHILSAAFWD--HFNIPTIGFHLGKETITIDLE-TANLSTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +       +  
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRK--EPTMTENIRVVIIAN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R+   +    + L  ++  L  
Sbjct: 203 NGCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLKLMGQHQQILTDVSKQLNS 261

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K   ++ N       +I     +S   +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKAIQAMNEKLLFVEANELLQQSEEIHAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVTLDMNA--LLKDALPSIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSRDEFLNQLVSSLQ 408


>gi|199581762|gb|ACH89552.1| alanyl-tRNA synthetase [Alpheus nuttingi]
          Length = 190

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDSDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEVLQDAFPEVAKDPEYTKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           L RG  LL  
Sbjct: 181 LGRGQKLLKR 190


>gi|229111045|ref|ZP_04240604.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-15]
 gi|228672408|gb|EEL27693.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-15]
          Length = 411

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 163/396 (41%), Gaps = 29/396 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G  + VV ++T FY   GGQ  DTG    D   + + +      G   H+       L 
Sbjct: 37  KGGNLYVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLH 88

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           TE  +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ 
Sbjct: 89  TED-VEGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TEN 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + +  ++      N I+ +N P+  + MN E+A              + +RVV +E    
Sbjct: 145 LHAETVEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRK--EPTMTENIRVVMIEN--- 199

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K+++
Sbjct: 200 --FDYNGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNVS 256

Query: 747 SFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHII 801
             L  S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + 
Sbjct: 257 KQLNSSETDIPTKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TIE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|199581642|gb|ACH89492.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/189 (38%), Positives = 109/189 (57%), Gaps = 10/189 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLD 370
           LDRG  LL 
Sbjct: 181 LDRGQKLLK 189


>gi|319654730|ref|ZP_08008809.1| hypothetical protein HMPREF1013_05431 [Bacillus sp. 2_A_57_CT2]
 gi|317393646|gb|EFV74405.1| hypothetical protein HMPREF1013_05431 [Bacillus sp. 2_A_57_CT2]
          Length = 400

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 170/388 (43%), Gaps = 32/388 (8%)

Query: 498 QGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           + E+V +A    +K+  V  +T FY   GGQ  D G   G    +++ DV ++AEG   H
Sbjct: 15  ETELVYQAEDDKEKIYAVLKETAFYPTGGGQPHDEGTLNG----VKVLDV-EEAEGEIRH 69

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           +  +ER +  +  S+   ID+  R      H+  H+L  A   + G         +  + 
Sbjct: 70  Y--LERELDPSISSVSGEIDWNRRFDHMQQHAGQHILSAAFEELYGYKTVS--FHLGKET 125

Query: 617 LRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           L  D+  S+ P+  AE    E   N II +N P+  R ++ E+A        L  +  D 
Sbjct: 126 LTIDLDISELPVRHAE--EAERLANRIILENRPIEARWVSAEEASQFPLRKQLSVR-EDI 182

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
             V+  E++  G      CGGTH SSTG++  + ++     +  I R++ I G R  + L
Sbjct: 183 RLVMIPEFDYNG------CGGTHPSSTGQVAGIKVLDWERQKKKI-RVQFICGNRILAQL 235

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             + E  K+L+  L  S+ ++      + E  + L+      K  L   +     IA  N
Sbjct: 236 QSKHEITKNLSQLLNASEEDLPSAASRLIENGKNLEKQLEAAKEALLAYEAKELFIAG-N 294

Query: 796 F--MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
               S +      +EL+ +   +  + ++ +++L+  + + K   +     D     +  
Sbjct: 295 GECTSKVFEGRSIQELQKLARLIASQSENAVVILINETAD-KLQFVCASGAD-----SGS 348

Query: 854 DLARLSAKVL--GGGGGGGRPHMAQSGG 879
           D+  L+A++L    G GGG P  AQ GG
Sbjct: 349 DMKGLAAELLQKINGKGGGNPQFAQGGG 376


>gi|294499023|ref|YP_003562723.1| Threonyl and Alanyl tRNA synthetase domain-containing protein
           [Bacillus megaterium QM B1551]
 gi|294348960|gb|ADE69289.1| Threonyl and Alanyl tRNA synthetase domain protein [Bacillus
           megaterium QM B1551]
          Length = 391

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 158/402 (39%), Gaps = 28/402 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E++E         +   QT FY E GGQ  D G   G    + + DV ++  G   H 
Sbjct: 16  ETEVIETRSLSNGYALTLKQTAFYPEGGGQPSDYGNIAG----IDVKDVYEE-NGEVYHI 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L  + ++   I++  R      HS  HLL   L      H       +  + +
Sbjct: 71  V----NTLPAQTNVTCEINWHRRFDHMQQHSGQHLLSALLIDTYDIHTVS--FHLGNEAV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + ++  +L  IE  VND I  N  + T  + +E+        +   + ++ VR
Sbjct: 125 SIDLNVPQ-LSHEQLLHIEKVVNDAIHSNRHIKTYEVKKEELHTLALRKVPDLE-DEVVR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  D        C GTHV+  GE+ L+ +      + G  R+    G RA +    
Sbjct: 183 IVEIEGIDVS-----ACCGTHVNQIGELGLIKLTKTEK-QRGNTRLFFKCGMRALADYQQ 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNF 796
             E +  L++    S+  VV R++++  E ++LQ    + K +             + +F
Sbjct: 237 SQEIVAELSNKFSTSRELVVERIKKLETEQKELQKQLEELKNENAAYLASELESKKEGSF 296

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           + H       K+++++   L +   +   +L   S ++K  +    +          +L 
Sbjct: 297 LYHHFENRTLKDVQALTKQLLQTPDT--TLLFSFSSDQKVLLAHSGS-----GVKCGELY 349

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +    +  G GGGG P  AQ+   +    +  I+ V   + +
Sbjct: 350 KELLPLYDGKGGGG-PKQAQASFSSSENMNAFISAVKEKITE 390


>gi|229134426|ref|ZP_04263239.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST196]
 gi|228649047|gb|EEL05069.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST196]
          Length = 411

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + +V ++  G   H  I +         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----IPVINV-EEVNGEIRHFIIEQLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A H+L  A       ++   G  +  + +  D+  +  +++  
Sbjct: 93  EGKIDWERRFDHMQQHTAQHILSAAFWD--HFNIPTIGFHLGKETITIDLE-TANLSTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +E      +  
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRK--EPTMTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R+   +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCH--KIADVNFMSHIISEVDS 806
           S  ++  +V ++    ++ +        +L      +L     +I     +S   +    
Sbjct: 262 SDTDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQPAEIYAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    N   L + +   + G 
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVTLDMN--TLLKDALPSIEGK 378

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG + + A+ GG      D+ +  + S L+
Sbjct: 379 GGGNKKN-ARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|199581618|gb|ACH89480.1| alanyl-tRNA synthetase [Alpheus cf. bouvieri CRH-2008]
          Length = 190

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/190 (37%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A + ++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQXLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|228966520|ref|ZP_04127573.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793242|gb|EEM40792.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 408

 Score =  219 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  + I   H I E+        +
Sbjct: 39  YVVSNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVNDEI--RHFITEQLHTE---EV 89

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 90  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLHAET 146

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+ T  MN E+A              + +RVV +E         
Sbjct: 147 VEEAVQIANKIVFENHPIRTLWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 199

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 200 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIIKDVSKQLNS 258

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    + A+++    +S + +    
Sbjct: 259 SEIDIPTKVAQLLTSQKENEKAIQTMNEKLLYAEANELLQQPAEIHASILISQVFTNRSM 318

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 319 QEIAKLSAIITEQQEHAITYFV-IQNEDKLQCILACGKSITLDMNA--LLKEALPTI-DG 374

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      ++ +  + S L+
Sbjct: 375 KGGGNKKSARGGGKAVMTGEEFLNQLVSSLQ 405


>gi|261884369|ref|ZP_06008408.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 274

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 150/287 (52%), Gaps = 18/287 (6%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
            PF A++ GQ  DTG       ++Q  D +K    I     I  +  L+    ++  +  
Sbjct: 6   IPFKAQSAGQCEDTGML----GKIQAPDTKKYFGLILSM--IEAKTSLKIGDIVLCEV-S 58

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            NR ++  +HSATH+L  AL  +LG+H++Q GS +  D LRFD +H KP+T  EL+ IE+
Sbjct: 59  LNRLEIRRHHSATHILQAALRNVLGAHIAQAGSSVEADKLRFDFSHPKPVTKEELEKIEN 118

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN+ I +  P    IM+ ++A  SGA AL G KY D+VRV+++        S  LCGGT
Sbjct: 119 FVNEAILKGAPAKIEIMDIQNAKKSGAIALFGEKYADKVRVLTLGP------SKELCGGT 172

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +  EI   +IV ES + AG+RRIEA+  + A        +++  +   LK    + +
Sbjct: 173 HVENLNEIGSFFIVRESGVSAGVRRIEAVCSKAALELSKEFRKEINDIKDSLKG--ADPL 230

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
             ++++ +E + LQ      K   N +DL+   I  V  +     E+
Sbjct: 231 LSIKKLKDEIKSLQND---LKNASNTKDLNVKDINGVKVVVSKFDEI 274


>gi|199581684|gb|ACH89513.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581686|gb|ACH89514.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581688|gb|ACH89515.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581690|gb|ACH89516.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581692|gb|ACH89517.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581694|gb|ACH89518.1| alanyl-tRNA synthetase [Alpheus utriensis]
 gi|199581696|gb|ACH89519.1| alanyl-tRNA synthetase [Alpheus utriensis]
          Length = 190

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    IEIWNLVFMQF +++      LPK  ID GMG ER+ ++LQ K++NYD D+F  
Sbjct: 1   KDDPDVIEIWNLVFMQFNRESDGSLRNLPKKHIDCGMGFERLVSILQNKSSNYDTDIFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ + +++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIILSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYAKSIINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|163941229|ref|YP_001646113.1| threonyl/alanyl tRNA synthetase SAD [Bacillus weihenstephanensis
           KBAB4]
 gi|163863426|gb|ABY44485.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus weihenstephanensis
           KBAB4]
          Length = 411

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 159/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + +++V ++  G   H  I +         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----VPVSNV-EEVNGEIRHFIIEQLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID++ R      H+A H+L  A       ++   G  +  + +  D+  +  +++  
Sbjct: 93  EGKIDWERRFDHMQQHTAQHILSAAFWD--HFNIPTIGFHLGKETITIDLE-TANLSTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A A            + +RVV +E      +  
Sbjct: 150 VEKAAQIANQIVFENHPIRIKWMNLEEAKALPLRK--EPTMTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R+   +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKHTGEVGPIQVLGWERNKGGI-RLTFIAGWRSLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCH--KIADVNFMSHIISEVDS 806
           S  ++  +V ++    ++ +        +L      +L     +I     +S   +    
Sbjct: 262 SDTDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQPAEIYAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    N   L + S   +  G
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVTLDMN--TLLKDSLPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|199581796|gb|ACH89569.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581802|gb|ACH89572.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581804|gb|ACH89573.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581806|gb|ACH89574.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581808|gb|ACH89575.1| alanyl-tRNA synthetase [Alpheus saxidomus]
 gi|199581814|gb|ACH89578.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581816|gb|ACH89579.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581818|gb|ACH89580.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581820|gb|ACH89581.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581822|gb|ACH89582.1| alanyl-tRNA synthetase [Alpheus simus]
          Length = 190

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|323142088|ref|ZP_08076936.1| threonine/alanine tRNA ligase second additional domain protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413475|gb|EFY04346.1| threonine/alanine tRNA ligase second additional domain protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 399

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 156/407 (38%), Gaps = 32/407 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            ++        K  V  DQT F+ E GGQL D G          +     + +G   H  
Sbjct: 17  AKVTACTPKDGKYLVELDQTVFFPEGGGQLSDRGKLAD-----AVVSHVSEKDGHIYHEC 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     +   +D+  R      H   HLL +A   +     +  G  +  D + 
Sbjct: 72  ---DKPLEVGAEVEAVLDWSVRLDRMQQHLGEHLLSYACWKL--FKANNIGFHMNEDDVF 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677
            D+   K +T  EL   E   N+II +N PV    M+  +A+          +K    +R
Sbjct: 127 IDL--DKELTDEELLQAELYTNEIIWENRPVHISYMDSIEAVKLKDKMRKFNSKLTGTLR 184

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +VSVE  D        C GTH   TG +  + ++     + G  R+E + G RA      
Sbjct: 185 IVSVEDAD-----ICTCCGTHPPFTGMLGSVKVIRHEKHKGGC-RVEFVCGHRALLDADA 238

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-------K 790
           ++  L S+A+ L V    V   V +   +    QL  AK KL    E+            
Sbjct: 239 KNSTLLSVAASLSVKPEQVPAAVSKQKNDLLA-QLDIAKSKLLKIEEEKLQETYAAAPVN 297

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
              V  ++  +   D+K++K+ +  +   +++ + +L+ +  E+ +  + +  +   D  
Sbjct: 298 ADGVKVLALPMEGHDAKDIKAFLPKVTA-LKNTLSLLLAVQPERISYAVALGVDTEGDCR 356

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           + + L   +     GG GGG+   AQ G        + +  V   LK
Sbjct: 357 SVIKLLNEA----FGGRGGGKSDCAQGGADYCADWQEKLQSVVEKLK 399


>gi|199581810|gb|ACH89576.1| alanyl-tRNA synthetase [Alpheus simus]
 gi|199581812|gb|ACH89577.1| alanyl-tRNA synthetase [Alpheus simus]
          Length = 190

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGXKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|326941340|gb|AEA17236.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 400

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 157/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 31  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 139 VEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L   + +   +  +       +S + +    
Sbjct: 251 SETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 397


>gi|164503900|gb|ABY59260.1| alanyl-tRNA synthetase [Afroleptomydas sp. 'Clanwilliam']
          Length = 183

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E  ++W  + G+  + I+  + 
Sbjct: 61  ETCTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWSNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPNVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503936|gb|ABY59278.1| alanyl-tRNA synthetase [Atomosia puella]
          Length = 184

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 14/185 (7%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERIKLPKERLYVTYFGGNKDAGLEPDYECRDIWLNL-GIKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGGGRSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 179

Query: 217 FILPK 221
            +LPK
Sbjct: 180 KLLPK 184


>gi|164503926|gb|ABY59273.1| alanyl-tRNA synthetase [Lestomyia fraudiger]
          Length = 183

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQSGLEPDLECKDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|228940707|ref|ZP_04103270.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973626|ref|ZP_04134208.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980184|ref|ZP_04140498.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis Bt407]
 gi|228779542|gb|EEM27795.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis Bt407]
 gi|228786087|gb|EEM34084.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818951|gb|EEM65013.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 411

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 157/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 150 VEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L   + +   +  +       +S + +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|226312694|ref|YP_002772588.1| truncated alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226095642|dbj|BAH44084.1| truncated alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 403

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 161/398 (40%), Gaps = 27/398 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                   VV +QT FY   GGQ  D G        +++ DV ++ +G   H   +E  +
Sbjct: 24  VEQDGTPYVVLNQTAFYPTGGGQPSDLGVLE----EIRVVDV-EEVDGEIRHR--LEAPL 76

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
             +   +   ID+  R      H+  H+L  +   ++ +        +  + +  DV   
Sbjct: 77  SESIGEVTGYIDWDRRFDHMQQHAGQHILSASFLEVVQAETVA--FHLGKERITIDVRLD 134

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +T+   + +E   N I+ +N P++ R ++ E+               + +RVV +   
Sbjct: 135 E-LTTEVWEKVEKRANQIVLENHPILARFVDDEELATLPLKK--QPTVTENIRVVMIP-- 189

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                    CGGTH + TGE+ ++ I+     R  I R+E I G RA      +   ++ 
Sbjct: 190 ---EFDYNPCGGTHPARTGEVGMIKILGWERHRGNI-RLEFICGWRALRDYNQKQAVVRD 245

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSH 799
            A  L  ++G ++ + E +  E   L+   A+      ++++N +  +  ++     +  
Sbjct: 246 TAKLLATNEGELIAQTERLLAERDTLKAKLAEVDKQLLEVEVNQQLATASQLGQSRLIMC 305

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
             S+   ++L+             I +L   + E K  ++    +D+    N   + + +
Sbjct: 306 TFSDKTIQQLQQFAQLATALAPDAICLLAATT-EDKMQIVFGRGQDVNVAIN--QVLKET 362

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             ++  G GGG P MAQ GG     A++ +      L+
Sbjct: 363 LPIIN-GKGGGNPAMAQGGGQAVVDAEEVLLHARKLLE 399


>gi|199581764|gb|ACH89553.1| alanyl-tRNA synthetase [Alpheus formosus]
          Length = 190

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 10/189 (5%)

Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
           +    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  +
Sbjct: 2   DDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTPI 61

Query: 253 IQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303
             A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLRR
Sbjct: 62  FDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLRR 121

Query: 304 IMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362
           I+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KTL
Sbjct: 122 ILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKTL 181

Query: 363 DRGLVLLDG 371
           DRG  LL  
Sbjct: 182 DRGQKLLKR 190


>gi|199581766|gb|ACH89554.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581768|gb|ACH89555.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581770|gb|ACH89556.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581774|gb|ACH89558.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581776|gb|ACH89559.1| alanyl-tRNA synthetase [Alpheus formosus]
 gi|199581778|gb|ACH89560.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581780|gb|ACH89561.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581782|gb|ACH89562.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581784|gb|ACH89563.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581786|gb|ACH89564.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581790|gb|ACH89566.1| alanyl-tRNA synthetase [Alpheus panamensis]
 gi|199581792|gb|ACH89567.1| alanyl-tRNA synthetase [Alpheus panamensis]
          Length = 190

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|229191707|ref|ZP_04318685.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 10876]
 gi|228591753|gb|EEK49594.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 10876]
          Length = 411

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  E I    A      L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEIRHFIAE----QLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETITIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RVV +E      +  
Sbjct: 150 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   ++   
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAFTDRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|199581798|gb|ACH89570.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDXVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581794|gb|ACH89568.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDVVVXILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|199581772|gb|ACH89557.1| alanyl-tRNA synthetase [Alpheus formosus]
          Length = 190

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLRR 190


>gi|296504127|ref|YP_003665827.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
 gi|296325179|gb|ADH08107.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
          Length = 400

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 31  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 139 VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRK--EPTMTENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMEQQQQIMKNVSKQLNS 250

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + +    
Sbjct: 251 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQHPTEIHAGILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 397


>gi|259015921|gb|ACV89244.1| alanyl-tRNA synthetase [Microchorista philpotti]
          Length = 199

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/186 (43%), Positives = 112/186 (60%), Gaps = 11/186 (5%)

Query: 90  FEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDED--------EEAFKLWK 141
           FEMLGN+SFG YFK+   + AW+LLT+ F L + RLY+T +  D        EE   LW 
Sbjct: 1   FEMLGNWSFGDYFKKEICEWAWELLTQVFKLPRDRLYVTYFGGDKVSGLQPDEECRDLWI 60

Query: 142 KISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
           ++ G+    +I  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 61  RL-GVPPTHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPEFVNMDDPDVLEIW 118

Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261
           NLVF+QF +++     +LPK  ID GMG ER+ +V+Q K  NYD D+F  L +A ++ TG
Sbjct: 119 NLVFIQFNRESDASLKLLPKKHIDCGMGFERLVSVIQNKRANYDTDIFMPLFEAIQKGTG 178

Query: 262 M-KYEG 266
             +Y+G
Sbjct: 179 APEYQG 184


>gi|199581630|gb|ACH89486.1| alanyl-tRNA synthetase [Alpheus bouvieri]
 gi|199581636|gb|ACH89489.1| alanyl-tRNA synthetase [Alpheus bouvieri]
          Length = 190

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ K++NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKGLPKKHIDCGMGLERLVSILQNKSSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           L  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  LFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +    +  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASXVDIVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|164503994|gb|ABY59307.1| alanyl-tRNA synthetase [Damalis annulata]
          Length = 183

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  ++EA          +W K+ GL  + I+  + 
Sbjct: 61  EICSWAWELLTERVQLPKDRLYVTYFGGNKEAGLEPDLDCRDIWLKL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREPDGTL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|149180556|ref|ZP_01859060.1| hypothetical protein BSG1_16405 [Bacillus sp. SG-1]
 gi|148851709|gb|EDL65855.1| hypothetical protein BSG1_16405 [Bacillus sp. SG-1]
          Length = 404

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 153/404 (37%), Gaps = 29/404 (7%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
            +   + ++     +     ++T FY   GGQ  D G    + +  ++ +V    EGI  
Sbjct: 23  FKTKLVSQQQSEDGRWFAQLEETAFYPTGGGQPFDKGTL-NNSMVTEVEEV----EGIIR 77

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H+       L+    +   I++  R      H+  H+L  + S  LG         +  D
Sbjct: 78  HYI---DSPLKGTYEISGAINWTRRFDHMQQHAGQHILSASFSKSLGYETVS--FHLGRD 132

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
               D+  S  +T  E    E   N +I QN P+ T+ +N+E+            +  D 
Sbjct: 133 TCTIDINTS-ALTEEESSKAEALANQVILQNQPIHTKWINKEEVDQYPLRKKPAVE-GDI 190

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
             V+  E++  G      CGGTH  STGE+ ++ I++    +    R+  + GQR    L
Sbjct: 191 RLVIIPEFDYNG------CGGTHPRSTGEVGMIKILNWEKQKKN-TRVTFVCGQRVADQL 243

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKI- 791
             ++  LK L   L      ++  V  + E   K + +  + +   L    EDL    + 
Sbjct: 244 HEKNSILKELTGVLNAPPSEMISAVRTLIENGNKNEKLLEEARETILVYEAEDLIKSSVD 303

Query: 792 -ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
              V  +  ++      +++ +   + +  +  +++L+      K   +           
Sbjct: 304 RGGVKVVKKVLQHRSMADMQKMARTILQTHE--VVVLLVSENGDKLQYVFGSCSSCQKDM 361

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
              +L    A  L  G GGG P MAQ GG      ++ +  +  
Sbjct: 362 K--ELIG-VALALTDGKGGGNPSMAQGGGSAVITGEELLERLLD 402


>gi|229080827|ref|ZP_04213345.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-2]
 gi|228702561|gb|EEL55029.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-2]
          Length = 411

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 163/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + ++ ++     + H I E+  L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEEINRE-----IRHYIAEQ--LHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RVV +E      +  
Sbjct: 150 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPNMTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   ++   
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAFTDRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKISAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|229146190|ref|ZP_04274565.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST24]
 gi|228637249|gb|EEK93704.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST24]
          Length = 411

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 150 VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRK--EPTMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMEQQQQIMKNVSKQLNS 261

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQHPTEIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|228953891|ref|ZP_04115930.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805859|gb|EEM52439.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 411

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 159/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RVV +E      +  
Sbjct: 150 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPNITENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+ L+ ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGLIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   ++   
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTTQTMNEKLLFAEANELLQQPTEIHAGLLISKAFTDRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKISAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|199581800|gb|ACH89571.1| alanyl-tRNA synthetase [Alpheus saxidomus]
          Length = 190

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKEDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RRA+ YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRAVRYATEKLKMKPGMFASLVDDVVEILHDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLVLLDG 371
           LDRG  LL  
Sbjct: 181 LDRGQKLLKR 190


>gi|229128895|ref|ZP_04257871.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-Cer4]
 gi|228654600|gb|EEL10462.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-Cer4]
          Length = 411

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 159/396 (40%), Gaps = 39/396 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALST-----ILGSHVSQNGSCITPDGLRFDVTHSKP 626
              I++  R      H+A H+L  A         +G H+ +    I  +        ++ 
Sbjct: 93  EGKINWDRRFDHMQQHAAQHILSAAFWDHFNMPTIGFHLGKVTVTIDLE--------TEN 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           + +  ++      N I+ +N P+  + MN E+A              + +RVV +E    
Sbjct: 145 LHAETVEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRK--EPTMTENIRVVMIEN--- 199

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K+++
Sbjct: 200 --FDYNGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNVS 256

Query: 747 SFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHII 801
             L  S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + 
Sbjct: 257 KQLNSSETDIPTKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVF 316

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +  
Sbjct: 317 TNRSMQEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALP 373

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            L  G GGG    A+ GG      D+ +  + S L+
Sbjct: 374 TLE-GKGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|229092592|ref|ZP_04223743.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-42]
 gi|228690745|gb|EEL44521.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-42]
          Length = 411

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 156/391 (39%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G      + +V ++           E         +
Sbjct: 42  YVILNETAFYPTGGGQPHDTGTLNG-ITVFGVEEVNEEIRHFITEQLHTE--------EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLISSLQ 408


>gi|299561766|gb|ADJ36955.1| alanyl-tRNA synthetase [Chyliza scrobiculata]
          Length = 184

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 14/185 (7%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMSKWLRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+  +L + RLY+T +        + D E  ++W  + GL A+ I+  + 
Sbjct: 61  EICSWAWEFLTERLNLPKDRLYVTYFGGHAESGLEPDLECRQIWLDL-GLKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGGGRSVPELVNMDDPDVLEIWNLVFIQYNREADSSL 179

Query: 217 FILPK 221
            +LPK
Sbjct: 180 RLLPK 184


>gi|228909431|ref|ZP_04073256.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           200]
 gi|228850208|gb|EEM95037.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           200]
          Length = 411

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAEM 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 150 VEKAIQIANKIVFENHPIRIQWMNLEEAKTLPLRK--EPNMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K   ++ N   L   KI     +S + +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKAIQTMNEKLLFVEANELLLQPIKIHADILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|229151818|ref|ZP_04280017.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1550]
 gi|228631631|gb|EEK88261.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1550]
          Length = 411

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 158/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I++  R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWDRRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 150 VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRK--EPTMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQHPTEIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|218230827|ref|YP_002368436.1| alanyl-tRNA synthetase family protein [Bacillus cereus B4264]
 gi|218158784|gb|ACK58776.1| alanyl-tRNA synthetase family protein [Bacillus cereus B4264]
          Length = 400

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 31  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 139 VEKAIQIANKIVFENHPIRIQWMNLEEAKRLPLRK--EPTMTENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQSMKNVSKQLNS 250

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + +    
Sbjct: 251 SETDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ I  + S L+
Sbjct: 367 KGGGNKKSARGGGKAIMSGDEFINQLVSSLQ 397


>gi|238588757|ref|XP_002391823.1| hypothetical protein MPER_08693 [Moniliophthora perniciosa FA553]
 gi|215457008|gb|EEB92753.1| hypothetical protein MPER_08693 [Moniliophthora perniciosa FA553]
          Length = 355

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 149/306 (48%), Gaps = 13/306 (4%)

Query: 487 GVSSIVKAIVQQGEIVE---EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQ 542
            +++ VKAI      +    E   G    V+ D+T FYAE+GGQ  DTG  + DG+   +
Sbjct: 3   NITATVKAIFHNKSFISSTSEIPPGTDFGVLLDRTSFYAESGGQENDTGSIVIDGVADFE 62

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
           +TDVQ    G  +H   ++ G L+    +V   D   R  L  NH+ATH+L++ L  +LG
Sbjct: 63  VTDVQ-VYNGYVLHTGRLKYGRLKVGDEVVSQYDELRRWPLRNNHTATHILNYCLREVLG 121

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            H+ Q GS + P  LRFD +H   IT+ EL  IE+     I++N+ V ++ ++ ++    
Sbjct: 122 DHIDQKGSLVAPSKLRFDFSHKAGITTPELTKIENMSLGWISRNVKVYSKDLSLQEGYKI 181

Query: 663 -GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS--TGEIMLLYIVSESSIRAG 719
            G  A+ G  Y D VRVVS+EY+   +           +S  TG+I    I  ES I  G
Sbjct: 182 PGLRAVFGEAYPDPVRVVSLEYDVDEIAKDLKNPKWRSTSQKTGDIKHFVITEESGIAKG 241

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-----WEEYRKLQLIH 774
           IRRI A+TG  A+       +    L    K++  +   +++ +       +   L+   
Sbjct: 242 IRRITAVTGHEAQEVTRVARDLETRLNEADKLTGKDKDAQLKALSVELGQADISVLKKNE 301

Query: 775 AKRKLQ 780
            K +L 
Sbjct: 302 LKDRLA 307


>gi|229179908|ref|ZP_04307254.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 172560W]
 gi|228603589|gb|EEK61064.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 172560W]
          Length = 411

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  E I    A      L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEIRHFIAE----QLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L          ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAVFWDY--FNIPTIGFHLGKETITIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RVV +E      +  
Sbjct: 150 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   ++   
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAFTDRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|164503984|gb|ABY59302.1| alanyl-tRNA synthetase [Willistonina bilineata]
          Length = 183

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503930|gb|ABY59275.1| alanyl-tRNA synthetase [Pegesimallus laticornis]
          Length = 183

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWSRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  +E        E  ++W  + G+ A+ I+  + 
Sbjct: 61  EICTWAWEFLTERMKLPKDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPKLVNMDDPDVLEIWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|229031279|ref|ZP_04187285.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1271]
 gi|228730037|gb|EEL81011.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH1271]
          Length = 411

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 155/391 (39%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG    D   + + +      G   H  + +         +
Sbjct: 42  YVILNETAFYPTGGGQPYDTGTL-NDIDVINVEE----INGEIRHFIVEQLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+     + +  
Sbjct: 93  KGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLETDN-LHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+ T  +N E+A              + +RVV +E         
Sbjct: 150 VEKAAQIANKIVFENHPIRTLWVNLEEAKTLPLRK--EPTLTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIIKDVSQQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +   H+  +++    +S + +    
Sbjct: 262 SENDIPAKVAQLLTSQKENEKAIQTMNEKLLYAEANELLHQPLEIHAGILISKVFNNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 408


>gi|206969398|ref|ZP_03230353.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH1134]
 gi|206736439|gb|EDZ53597.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH1134]
          Length = 400

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  E I    A      L TE  +
Sbjct: 31  YVVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEIRHFIAE----QLHTED-V 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L          ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAVFWDY--FNIPTIGFHLGKETITIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RVV +E      +  
Sbjct: 139 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----YDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKCTGEVGSIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   ++   
Sbjct: 251 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAFTDRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG +    D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKSVMNGDEFLNQLVSSLQ 397


>gi|164503966|gb|ABY59293.1| alanyl-tRNA synthetase [Acnephalum cylindricum]
          Length = 183

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  ++EA         ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTERVKLPKDRLYVTYFGGNKEAGLDPDLECREIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503952|gb|ABY59286.1| alanyl-tRNA synthetase [Trichardis sp. TD-2008]
          Length = 183

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECRNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503932|gb|ABY59276.1| alanyl-tRNA synthetase [Saropogon luteus]
          Length = 183

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGD-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503924|gb|ABY59272.1| alanyl-tRNA synthetase [Diogmites grossus]
          Length = 183

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561740|gb|ADJ36942.1| alanyl-tRNA synthetase [Stylogaster stylata]
          Length = 183

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/185 (44%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPSCEMAKWIRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT +  L + RLY+T +  D+        E  ++W  I G++A+ II    
Sbjct: 61  EICHWAWEFLTTKLMLPKERLYVTYFGGDQKGGLEPDLECKQIWLDI-GITAEHIIPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSEI FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSEIHFDRI-GNRSVPELVNQDDPDVLEIWNLVFIQFNREQNGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|164503898|gb|ABY59259.1| alanyl-tRNA synthetase [Mydas clavatus]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 110/185 (59%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E  ++W+K+ G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWQKL-GIKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503986|gb|ABY59303.1| alanyl-tRNA synthetase [Lasiopogon aldrichii]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +  +E        E  ++W K+ G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNEQAGLDPDLECKEIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503990|gb|ABY59305.1| alanyl-tRNA synthetase [Stichopogon punctum]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503988|gb|ABY59304.1| alanyl-tRNA synthetase [Lasiopogon cinctus]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +  +E        E  ++W K+ G+  + I+  + 
Sbjct: 61  EICSWAWELLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503982|gb|ABY59301.1| alanyl-tRNA synthetase [Tillobroma punctipennis]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVAPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  +E        E   +W K+ G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGNEQAGLEPDFECKDIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503896|gb|ABY59258.1| alanyl-tRNA synthetase [Opomydas townsendi]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWQNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561746|gb|ADJ36945.1| alanyl-tRNA synthetase [Minettia lupulina]
          Length = 181

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/183 (42%), Positives = 106/183 (57%), Gaps = 15/183 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWVRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+  +L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICSWAWEFLTERLNLPKDRLYVTYFGGDEASGLGPDLECKQIWTDL-GLRPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNLDDPDVLEIWNLVFIQYNREPDGSL 178

Query: 217 FIL 219
            +L
Sbjct: 179 SLL 181


>gi|164503946|gb|ABY59283.1| alanyl-tRNA synthetase [Nusa infumata]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW+LLT   +L + RLY+T +  +EEA          +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLNLPKDRLYVTYFGGNEEAGLEPDYECRDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|196044606|ref|ZP_03111841.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB108]
 gi|225865605|ref|YP_002750983.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB102]
 gi|196024641|gb|EDX63313.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB108]
 gi|225788966|gb|ACO29183.1| alanyl-tRNA synthetase family protein [Bacillus cereus 03BB102]
          Length = 400

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG        + +  V++  E I    A      L TE  +
Sbjct: 31  YVILNETAFYPTGGGQPHDTGTLNS----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 139 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 251 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAIMSGDEFLNQLISSLQ 397


>gi|164503998|gb|ABY59309.1| alanyl-tRNA synthetase [Holcocephala calva]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 104/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLGTADPNNDMSKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKI 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+    
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNKNAGLEPDIECKNIWLNL-GIKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GNRSVPELVNMDDPDVLEVWNLVFIQYNRETDGTL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|229071122|ref|ZP_04204348.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus F65185]
 gi|228712062|gb|EEL64011.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus F65185]
          Length = 411

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  E I    A      L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEIRHFIAE----QLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RV  +E      +  
Sbjct: 150 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPNMTENIRVFIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   ++   
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQPTEIHAGLLISKAFTDRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKISAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|164503972|gb|ABY59296.1| alanyl-tRNA synthetase [Lycostommyia albifacies]
          Length = 183

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  +E        E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503942|gb|ABY59281.1| alanyl-tRNA synthetase [Lamyra gulo]
          Length = 183

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +EEA         ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEEAGLEPDYECREIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503894|gb|ABY59257.1| alanyl-tRNA synthetase [Mitrodetus dentitarsis]
          Length = 183

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQSGLEPDLECKEIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503980|gb|ABY59300.1| alanyl-tRNA synthetase [Scylaticus costalis]
          Length = 183

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT   +L + RLY+T +  ++        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLNLPKDRLYVTYFGGNKEGGLDPDLECRDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|315231455|ref|YP_004071891.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
 gi|315184483|gb|ADT84668.1| alanyl-tRNA synthetase [Thermococcus barophilus MP]
          Length = 408

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 160/377 (42%), Gaps = 32/377 (8%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G KV +  D+T FY E GGQ  D G   GDG  +++  V  K E    H   ++    + 
Sbjct: 26  GNKVRLNLDRTIFYPEGGGQPSDKGIIRGDGFEIRVEKVYGKDE--IWHEGTLKGREPKP 83

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D++ R +    H+  H+L   L  +  S+ +  G  I  +  + ++  +  +
Sbjct: 84  GEEVELELDWEWRYENMKQHTGQHILSAVLKDLYDSNTT--GFQIFENYNKIEINFNGKL 141

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           T   + + E   N+I++++LPV     N   + + +     L  K    +R+VS+   D 
Sbjct: 142 TWEHILNAEIRANEIVSKDLPVEIEFYNELPEDLRNQLRKDLSDKIKPPIRIVSIPGVD- 200

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGGTHV ST E+  + +V+       I RIE + G RA  +L    E      
Sbjct: 201 ----VIPCGGTHVKSTREVGFIKVVNFYKKSKNIWRIEFVCGNRALRYLDELLEDYWESL 256

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHII 801
             +      ++ RV E+  E  KL+      +L+L     + L     ++  +  +S  +
Sbjct: 257 DEMPNKNRPLIKRVRELKNEIVKLEEEKKALRLELWEWKAKALLRGSEEVKGIKIVST-V 315

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS-- 859
            E+D K+ ++ +  L  K  + I + VG       + +I      ++  +  +L R    
Sbjct: 316 EELDMKDAQAFVVYLVDKNPNTIALFVG------RNYVIFAKNRGVEGVSMKELLREVIK 369

Query: 860 --------AKVLGGGGG 868
                   ++VL  GGG
Sbjct: 370 ETGGGGGGSEVLAKGGG 386


>gi|164503944|gb|ABY59282.1| alanyl-tRNA synthetase [Laxenecera albicincta]
          Length = 183

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSEMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + GL  + I+  + 
Sbjct: 61  EICTWAWELLTERIKLPKDRLYVTYFGGNEAAGLEPDYECRDIWLSL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREADGNL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 TLLPK 183


>gi|164503992|gb|ABY59306.1| alanyl-tRNA synthetase [Stichopogon trifasciatus]
          Length = 183

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNEQAGLEADLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503974|gb|ABY59297.1| alanyl-tRNA synthetase [Plesiomma sp. 'Guanacaste']
          Length = 183

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERIKLPKERLYVTYFGGNEQAGLEPDLECRNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|42782693|ref|NP_979940.1| alanyl-tRNA synthetase family protein [Bacillus cereus ATCC 10987]
 gi|42738619|gb|AAS42548.1| alanyl-tRNA synthetase family protein [Bacillus cereus ATCC 10987]
          Length = 400

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 163/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+        +
Sbjct: 31  YVVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFITEQLHTE---EV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGRETVTIDLE-TENLHTET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    MN E+A              + +RVV +E         
Sbjct: 139 VEKAVQIANNIVFENHPIRIEWMNLEEAKTLPLRK--EPTMIENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L  H  +I     +S + +    
Sbjct: 251 SESDISAKVAQLLTSQKENEKTIQTMTEKLLYAEANELLQHPTEIHAGILISKMFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEVSKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKKALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 397


>gi|167640567|ref|ZP_02398829.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0193]
 gi|170708135|ref|ZP_02898582.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0389]
 gi|177652509|ref|ZP_02934976.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0174]
 gi|190564654|ref|ZP_03017575.1| alanyl-tRNA synthetase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229600113|ref|YP_002867814.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0248]
 gi|254738662|ref|ZP_05196365.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|167511435|gb|EDR86819.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0193]
 gi|170126943|gb|EDS95823.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0389]
 gi|172082183|gb|EDT67250.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0174]
 gi|190563971|gb|EDV17935.1| alanyl-tRNA synthetase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|229264521|gb|ACQ46158.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0248]
          Length = 400

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 31  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 139 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    +E +K      ++ L     +L     KI     +S + +    
Sbjct: 251 SEADIPAKVAQLLTSQKENKKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 397


>gi|152975999|ref|YP_001375516.1| threonyl/alanyl tRNA synthetase SAD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024751|gb|ABS22521.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cytotoxicus NVH
           391-98]
          Length = 414

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 157/392 (40%), Gaps = 29/392 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V   +T FY   GGQ  D G        + +T+V ++  G   H    E      E+ +
Sbjct: 45  YVTLTETAFYPTGGGQPHDIGTLNN----VSVTNV-EEINGEIRHFISEELH----EVEV 95

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID+  R      H+A H+L  A       ++   G  +  + +  D+     +++  
Sbjct: 96  IGKIDWNRRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGAETVTIDLDTPT-LSAET 152

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
                   N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 153 ATEALRIANQIVLENHPIHIKWMNLEEAKQLPLRK--EPLLYENIRVVIIEN-----FDY 205

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  ++I+     + GI R+  I G RA   +  Q + +K ++  L  
Sbjct: 206 NGCGGTHPKYTGEVGPIHIIGWERNKGGI-RLSFIAGWRAIKLMGHQQQIIKEVSKQLNS 264

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNF---MSHIISEVDS 806
            + ++  +V ++    ++ +      + KL +   +    + AD +    +S   S    
Sbjct: 265 GENDIPRKVHQLITSQKESEKELQVMREKLLVIEANDLLQEAADTHVGMLISKAFSNRSM 324

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ ++ I   V    E K   ++   + +    +  ++ + +   +  G
Sbjct: 325 QEIAKLSAIITEQNENTITYFV-TENEDKLQCILACGKSI--NISMNNMLKDALPTIE-G 380

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GGG P  A+ GG      +Q +  +   LK+
Sbjct: 381 KGGGNPKSARGGGKALISGEQFLQQLVQALKE 412


>gi|255656151|ref|ZP_05401560.1| putative RNA-binding protein [Clostridium difficile QCD-23m63]
 gi|296450416|ref|ZP_06892172.1| DHHA1 domain protein [Clostridium difficile NAP08]
 gi|296879461|ref|ZP_06903455.1| DHHA1 domain protein [Clostridium difficile NAP07]
 gi|296260677|gb|EFH07516.1| DHHA1 domain protein [Clostridium difficile NAP08]
 gi|296429607|gb|EFH15460.1| DHHA1 domain protein [Clostridium difficile NAP07]
          Length = 399

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 179/407 (43%), Gaps = 32/407 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EIVE      K  V+ D+T F+   GGQ  D G          +  V ++ + ++    
Sbjct: 16  AEIVEIKEVENKFHVLLDKTAFFPGGGGQFADLGKIDN----YDVISVYEEGKKVYH--- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           ++++  ++    +  +ID+  R      H   H+L         ++ +  G  +  +   
Sbjct: 69  VLDKKPIKIH-RVKCSIDWNRREDGMHQHFGQHVLSGCFFKTFNANTT--GFHLGSEYST 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+  +  +   +++ IE   N+II QN+ V T +  +++         L    ++ +RV
Sbjct: 126 VDIEGN--LDEDKIREIELLSNEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-DEEIRV 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +     G   +  C G H  +TGE+ ++ I      ++   RIE + G+RA   ++ +
Sbjct: 183 VKI-----GDLDTNACCGVHPKATGELRMIKIKKWEKHKS-STRIEFLAGKRAVDDILKR 236

Query: 739 DEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           D  L  +  +L  ++ + +        +VEE+  + R+L+ + +  +++  +E    +KI
Sbjct: 237 DIYLTKICRYLSCNEEDAINGIVNLNSKVEEVLIKKRRLEEVVSTYQVKEMIEK--ANKI 294

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
            +++ +  I  + D K +  + + + +   +  I L+ +    K +++   +++L D  N
Sbjct: 295 GNISVVKKIYEDEDLKYVNKIANKITEHENN--IALLAVKFNDKINLVFACSKNLKD-IN 351

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              L + +  ++  G GGG   +AQ GG N    +  +      ++K
Sbjct: 352 MGVLLKDAISLI-DGKGGGSKILAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|259015941|gb|ACV89253.1| alanyl-tRNA synthetase [Nannochorista sp. BMW-2009]
          Length = 198

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/181 (41%), Positives = 106/181 (58%), Gaps = 10/181 (5%)

Query: 91  EMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKK 142
           EMLGN+SFG YFK+   + AW+LLT+ F L   RLY+T +  DE        E   +W +
Sbjct: 1   EMLGNWSFGDYFKKEICEWAWELLTQVFKLPGDRLYVTYFGGDEASGLQPDEECRDIWIR 60

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
           + G+ +  +I  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 61  L-GVPSAHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWN 118

Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262
           LVF+QF +++      LPK  ID GMG ER+ +V+Q K  NYD D+F  L +A ++ TG 
Sbjct: 119 LVFIQFNRESDSSLKSLPKKHIDCGMGFERLVSVIQNKRANYDTDIFMPLFEAIQKGTGA 178

Query: 263 K 263
            
Sbjct: 179 P 179


>gi|164503968|gb|ABY59294.1| alanyl-tRNA synthetase [Connomyia varipennis]
          Length = 183

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P         V   QKC+RAGGKHNDLD+VG+   HHTFF+MLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSNMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFKMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +  ++EA          +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNKEAGLEPDLECKDIWLNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWDMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREPDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|196034210|ref|ZP_03101620.1| alanyl-tRNA synthetase family protein [Bacillus cereus W]
 gi|195993284|gb|EDX57242.1| alanyl-tRNA synthetase family protein [Bacillus cereus W]
          Length = 400

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 31  YVILNETAFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 139 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 251 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 397


>gi|164503954|gb|ABY59287.1| alanyl-tRNA synthetase [Lasiocnemus lugens]
          Length = 183

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGSADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWELLTERLQLPKDRLYVTYFGGNEQAGLEPDLECRDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|47567906|ref|ZP_00238613.1| alanyl-tRNA synthetase-related protein [Bacillus cereus G9241]
 gi|47555384|gb|EAL13728.1| alanyl-tRNA synthetase-related protein [Bacillus cereus G9241]
          Length = 411

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 156/391 (39%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G      + +V ++           E         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG-ITVFGVEEVNEEIRHFITEQLHTE--------EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  +       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSASFWD--HFNIPTIGFHLGRETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    M+ E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANNIVFENHPIHIEWMDLEEAKTLPLRK--EPNMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    + A ++    +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKTIQTMNEKLLYAEANELLQQPAKIHASILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   + I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEISKLSAIITEQQEHAITYFI-IENEDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMTGDEFLNQLISSLQ 408


>gi|229098065|ref|ZP_04229013.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-29]
 gi|228685256|gb|EEL39186.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-29]
          Length = 411

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/394 (20%), Positives = 160/394 (40%), Gaps = 29/394 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
             + VV ++T FY   GGQ  DTG   G      +    ++  G   H    +       
Sbjct: 39  DNLYVVLNETAFYPTGGGQPYDTGTLNG-----TLVTNVEEVNGEIRHFIAEQLET---- 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + 
Sbjct: 90  AEVEGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLP 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++      N+I+ +N P+  + MN E+A              + +RVV +E      
Sbjct: 147 AETIEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRK--EPTLTENIRVVIIEN----- 199

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  
Sbjct: 200 FDYNGCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISE 803
           L  S+ ++  +V ++     E  + +Q I+ K       E L    +I     +S + + 
Sbjct: 259 LNSSETDIPAKVAQLLISQKENEKAIQTINEKLLFAEANELLQQPAEIHAGFLISKVFTN 318

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +
Sbjct: 319 RSMQEVAKLSAIIIEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAI 375

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG    A+ GG      D+ +  + S L+
Sbjct: 376 E-GKGGGNKKSARGGGKAIMSGDEFLHQLISSLQ 408


>gi|164503970|gb|ABY59295.1| alanyl-tRNA synthetase [Gonioscelis ventralis]
          Length = 183

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 102/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  +E        E   +W  + G+    I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECRDIWLSL-GVKPQHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGD-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KSLPK 183


>gi|164503948|gb|ABY59284.1| alanyl-tRNA synthetase [Pilica formidolosa]
          Length = 183

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWELLTERLKLPKDRLYVTYFGGNKEAGLEPDYECQNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRI-GNRSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|183011928|gb|ACC37893.1| alanyl-tRNA synthetase [Microsepsis armillata]
          Length = 179

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/181 (43%), Positives = 102/181 (56%), Gaps = 15/181 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPXFLGTAXPNSEMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E WNLVF+QF 
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEXWNLVFIQFN 178

Query: 210 Q 210
           +
Sbjct: 179 R 179


>gi|184161011|gb|ACC68527.1| alanyl-tRNA synthetase [Ospriocerus aeacus]
          Length = 183

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 103/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L   RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPSDRLYVTYFGGNEQAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503890|gb|ABY59255.1| alanyl-tRNA synthetase [Phycus frommeri]
          Length = 183

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E  ++W K+ G+  + I+  + 
Sbjct: 61  EICAWAWELLTERLKLPKERLYVTYFGGNEKAGLEPDLECKEIWLKL-GIKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREQDGTL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|30263570|ref|NP_845947.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Ames]
 gi|47528968|ref|YP_020317.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186419|ref|YP_029671.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Sterne]
 gi|65320898|ref|ZP_00393857.1| COG2872: Predicted metal-dependent hydrolases related to
           alanyl-tRNA synthetase HxxxH domain [Bacillus anthracis
           str. A2012]
 gi|254759251|ref|ZP_05211277.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Australia 94]
 gi|30258205|gb|AAP27433.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Ames]
 gi|47504116|gb|AAT32792.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49180346|gb|AAT55722.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Sterne]
          Length = 411

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    +E +K      ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENKKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|259015925|gb|ACV89246.1| alanyl-tRNA synthetase [Halictophagidae sp. BMW-2009]
          Length = 201

 Score =  215 bits (547), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/190 (40%), Positives = 107/190 (56%), Gaps = 10/190 (5%)

Query: 88  TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKL 139
           TFFEMLGN+SFG YFK+     AW  L     L++ RLY+T +          D E  ++
Sbjct: 1   TFFEMLGNWSFGDYFKKEVCHWAWQYLVDVLKLEKDRLYVTYFAGDSKSQLKPDYEVQEI 60

Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
           WK+I G+    II  +  DNFW M ETGPCGPCSEI FD+           +++    +E
Sbjct: 61  WKQI-GIDDSHIIPGSMKDNFWEMGETGPCGPCSEIHFDRI-GNRNAADLVNQDDPDVLE 118

Query: 200 IWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           +WNLVF++F + +  +   LPK  +DTGMGLER+ +++Q K +NYD DLF  +       
Sbjct: 119 VWNLVFIEFNRDSSGQLHSLPKKHVDTGMGLERLVSIMQNKRSNYDTDLFTPIFDEICAK 178

Query: 260 TGMKYEGNNI 269
           TG +     +
Sbjct: 179 TGTRPYTGQV 188


>gi|52141918|ref|YP_084911.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|301055110|ref|YP_003793321.1| alanine-tRNA ligase [Bacillus anthracis CI]
 gi|51975387|gb|AAU16937.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|300377279|gb|ADK06183.1| alanine-tRNA ligase [Bacillus cereus biovar anthracis str. CI]
          Length = 411

 Score =  215 bits (547), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|228959807|ref|ZP_04121482.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799937|gb|EEM46879.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 411

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-I 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+  + MN E+A              + +RVV +E         
Sbjct: 150 VEKAIKIANKIVFENHPIRIQWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K+++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKNVSKQLNS 261

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K    + N   L   KI     +S + +    
Sbjct: 262 SETDIPVKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|228916251|ref|ZP_04079821.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928672|ref|ZP_04091708.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123139|ref|ZP_04252346.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 95/8201]
 gi|228660433|gb|EEL16066.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus 95/8201]
 gi|228830991|gb|EEM76592.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843449|gb|EEM88527.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 411

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETAFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|228947237|ref|ZP_04109531.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812484|gb|EEM58811.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 411

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETAFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIES-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|229117082|ref|ZP_04246462.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-3]
 gi|228666371|gb|EEL21833.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock1-3]
          Length = 411

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 161/394 (40%), Gaps = 29/394 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
             + VV ++T FY   GGQ  DTG   G      +    ++  G   H    +       
Sbjct: 39  DNLYVVLNETAFYPTGGGQPYDTGTLNG-----TLVTNVEEVNGEIRHFIAEQLET---- 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + 
Sbjct: 90  AEVEGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLP 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++      N+I+ +N P+  + MN E+A              + +RVV +E      
Sbjct: 147 AETIEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRK--EPTLTENIRVVIIEN----- 199

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  
Sbjct: 200 FDYNGCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISE 803
           L  S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + + 
Sbjct: 259 LNSSETDIPAKVAQLLISQKENEKAIQTMNEKLLFAEANELLQQPAEIHAGFLISKVFTN 318

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +
Sbjct: 319 RSMQEVAKLSAIIIEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAI 375

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG    A+ GG     +D+ +  + S L+
Sbjct: 376 E-GKGGGNKKSARGGGKAIMSSDEFLHQLISSLQ 408


>gi|183011946|gb|ACC37902.1| alanyl-tRNA synthetase [Saltella sphondylii]
          Length = 182

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 15/184 (8%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPFFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +        + D E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
               DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 120 GNMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREAD 178

Query: 214 QERF 217
               
Sbjct: 179 SSLK 182


>gi|164503958|gb|ABY59289.1| alanyl-tRNA synthetase [Leptogaster cylindrica]
          Length = 183

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWELLTERLKLPKDRLYVTYFGGNEKAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|206976173|ref|ZP_03237082.1| alanyl-tRNA synthetase family protein [Bacillus cereus H3081.97]
 gi|217961027|ref|YP_002339595.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH187]
 gi|206745627|gb|EDZ57025.1| alanyl-tRNA synthetase family protein [Bacillus cereus H3081.97]
 gi|217063211|gb|ACJ77461.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH187]
          Length = 400

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+        +
Sbjct: 31  YVVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFITEQLHTE---EV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGREIVTIDLE-TENLHTET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    MN E A              + +RVV +E         
Sbjct: 139 VEKAVQIANNIVFENHPIRIEWMNLEAAKTLPLRK--EPTMIENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L  H  +I     +S + +    
Sbjct: 251 SESDIPAKVAQLLTSQKENEKTIQTMTEKLLYAEANELLQHPTEIHAGILISKMFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEVSKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKKALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 397


>gi|165871092|ref|ZP_02215743.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0488]
 gi|167636463|ref|ZP_02394761.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0442]
 gi|170688416|ref|ZP_02879624.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0465]
 gi|218904751|ref|YP_002452585.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH820]
 gi|227813545|ref|YP_002813554.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str. CDC
           684]
 gi|254726044|ref|ZP_05187826.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A1055]
 gi|164713303|gb|EDR18829.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0488]
 gi|167528122|gb|EDR90914.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0442]
 gi|170667586|gb|EDT18341.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           A0465]
 gi|218539367|gb|ACK91765.1| alanyl-tRNA synthetase family protein [Bacillus cereus AH820]
 gi|227004254|gb|ACP13997.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str. CDC
           684]
          Length = 400

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 31  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 139 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 251 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 397


>gi|299561750|gb|ADJ36947.1| alanyl-tRNA synthetase [Lonchoptera tristis]
          Length = 183

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWIRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +        + D E  ++W  + GL  + II  + 
Sbjct: 61  EICTWAWEFLTDRLKLPKDRLYVTYFGGHEESGLEGDLECKQIWLDL-GLKPEHIIPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ +D+           + +    +EIWNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHYDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|226324688|ref|ZP_03800206.1| hypothetical protein COPCOM_02474 [Coprococcus comes ATCC 27758]
 gi|225207136|gb|EEG89490.1| hypothetical protein COPCOM_02474 [Coprococcus comes ATCC 27758]
          Length = 382

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 166/399 (41%), Gaps = 36/399 (9%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E+V         E V  +T F+ E GGQ  DTG   G    +++ DVQ+K E IF +  
Sbjct: 17  AEVVSCRPCDNGYEAVLSRTAFFPEGGGQAADTGVIDG----IRVYDVQEKGEQIFHYL- 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
               G L    ++   ID+  R      HS  H++   +    G      G  +  +   
Sbjct: 72  ---EGELEEGKTVTGQIDWDKRFSRMQQHSGEHIVSGIVHARFGY--DNVGFHLNDELCT 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+  S P+T  EL+ +E+  N+ +  N+PV     ++E        + +  + + +VR+
Sbjct: 127 LDL--SGPLTKEELREVENAANEAVFANVPVQISYPSKEKLKTLDYRSKI--EIDGQVRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V++       +    C   HV  TGEI L+ +V   + + GI RI  + G+RA      +
Sbjct: 183 VTIPG-----YDVCACCAPHVYFTGEIGLIKLVQSQNYKGGI-RITMLCGRRALKDYQQK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +E +K++   L   +  +   VE + EE  +L+   A+ + Q+       +         
Sbjct: 237 EESVKAIMGSLSAKEELIAEAVERVKEECTQLKSELAETRYQILEAQAEKNSGGTEKRSV 296

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
              S++   E + +M+ + KK      +  G  +     V+   TED           R 
Sbjct: 297 FFDSKLSGNEPRELMNLVLKKGTEVCAVFAGNEESGYRYVIGSETED----------VRP 346

Query: 859 SAKVLG---GGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            +K+L     G GGG+P M Q      N +++AI  V  
Sbjct: 347 YSKILKEQFDGRGGGKPVMVQGS---VNGSEEAIRKVFE 382


>gi|164503996|gb|ABY59308.1| alanyl-tRNA synthetase [Damalis monochaetes]
          Length = 183

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVAPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  ++EA          +W K+ G+  + I+  + 
Sbjct: 61  EICSWAWELLTERVKLPKDRLYVTYFGGNKEAGLEPDLECRDIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|164503956|gb|ABY59288.1| alanyl-tRNA synthetase [Leptogaster arida]
          Length = 183

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGAADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        E   +W  + GL  + I+  + 
Sbjct: 61  EICSWAWELLTERLKLPKDRLYVTYFGGNEKSGLEPDLECKNIWLSL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503938|gb|ABY59279.1| alanyl-tRNA synthetase [Cerotainia albipilosa]
          Length = 183

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W K+ G+  + I+  + 
Sbjct: 61  EICSWAWELLTERIKLPKDRLYVTYFGGNKESGLEPDYECKDIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|183011944|gb|ACC37901.1| alanyl-tRNA synthetase [Saltella nigripes]
          Length = 182

 Score =  214 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 77/184 (41%), Positives = 104/184 (56%), Gaps = 15/184 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W  + GL  + I+    
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREADSSL 178

Query: 217 FILP 220
            +LP
Sbjct: 179 KMLP 182


>gi|57641542|ref|YP_184020.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           kodakarensis KOD1]
 gi|57159866|dbj|BAD85796.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           kodakarensis KOD1]
          Length = 406

 Score =  214 bits (546), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 101/404 (25%), Positives = 169/404 (41%), Gaps = 33/404 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EAV   K+ V+ D+T FY E GGQ  D G   GDG R+ +  V  K E    H   +E  
Sbjct: 23  EAVEDGKIRVLLDRTIFYPEGGGQPSDRGIIEGDGFRVLVEKVSGKEE--IWHEGKLEGR 80

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +      + L +D++ R +   NH+  H+L   +  + G+  +  G  I  +  + ++ +
Sbjct: 81  LPEAREEVRLVLDWEWRYENMKNHTGQHVLSAIIKGLYGAETT--GFQIFENYNKIEIDY 138

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +T   ++ IE   N++I  +LPV                    +K +DR+R++ +  
Sbjct: 139 PGELTWEMIQEIERKTNEVIWGDLPVEVEEYQYLPEDVVKILRKHVSKVHDRIRIIKI-- 196

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G   +  CGGTHV ST EI  L I+        + RIE + G RA   L G      
Sbjct: 197 ---GTVDATPCGGTHVKSTREIGFLKILRFYRKSRKLWRIEFVAGNRALRTLNGILSDYW 253

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMS 798
           +    +      +V R++E+ E   KL+    + K +L             KI D+  ++
Sbjct: 254 NALDEMPNKNPPLVERIQELKETMDKLEAEKDELKEELWEWKGKYLLEKSEKIGDIRVVT 313

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            +I     KE++       +K    ++++VG +      VL    ED+    +  +L   
Sbjct: 314 -LIEGKPMKEVQGFAVKFVEKNPRTVLLVVGEN-----YVLFARNEDV--NVSMRELFER 365

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQ----AIAGVASFLKK 898
            A  L GG GGG  ++A+       K D      +      LK+
Sbjct: 366 VASQL-GGKGGGTDNLARG------KVDAEPRVILQTARDVLKE 402


>gi|288556728|ref|YP_003428663.1| hypothetical protein BpOF4_18650 [Bacillus pseudofirmus OF4]
 gi|288547888|gb|ADC51771.1| hypothetical protein BpOF4_18650 [Bacillus pseudofirmus OF4]
          Length = 398

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 84/403 (20%), Positives = 162/403 (40%), Gaps = 26/403 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +++++    +   +V DQT FY   GGQ  D G    D + + + +   + EG   H+
Sbjct: 16  EAKVIKKDTDERGTYLVLDQTVFYPTGGGQPCDRGQL--DDVEITLVE---EVEGEIRHY 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             V+  +L T  ++   ID+  R      H+  H+L  A + + G      G  +  + +
Sbjct: 71  --VQSPLLETGQTVHGQIDWSRRFDHMQQHAGQHILSAAFAELFGYQTV--GFHLGTEEV 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + +T  E + +    N+II +N  +  R ++ E+A        L  K  D   
Sbjct: 127 TIDLEIPQ-LTIDEAEKVVHYANEIIQENRVIEARWVSEEEANRYPLRKALSVK-GDIRL 184

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           V+  +++  G      CGGTH   T E+  L I      R  I RI  + G R       
Sbjct: 185 VIIPDFDYNG------CGGTHPKQTLEVQGLSITGWEKQRNNI-RISFLCGNRVFKQFAR 237

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
            ++ L+ L+  L      +  +   +  + ++      + K +L   +      SC  ++
Sbjct: 238 HNQILQKLSQTLNAQYIKLPEKATSLIVKQKEADKELEQIKSELLKYEAAELLNSCEVVS 297

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           + + +         KEL+ +   + ++    ++  V  + E K  +++ V +  ++   A
Sbjct: 298 NQSRLFKRFKNRSIKELQQLAKDVVEENDQAVVFFVSETAE-KTQLVMAVGK-AVNSVQA 355

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             + +     L  G GGG  H AQ GG  G   +     V   
Sbjct: 356 NMMMKKVLPYL-DGRGGGNQHFAQGGGNKGADVESLFELVREL 397


>gi|49478299|ref|YP_037698.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329855|gb|AAT60501.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 411

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQYILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKALMSGDEFLNQLISSLQ 408


>gi|196038530|ref|ZP_03105839.1| alanyl-tRNA synthetase family protein [Bacillus cereus NVH0597-99]
 gi|196030938|gb|EDX69536.1| alanyl-tRNA synthetase family protein [Bacillus cereus NVH0597-99]
          Length = 400

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 31  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 139 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 251 SESDIPAKVAQLLTSKKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENEDKLQYILACGKTVTLDMNA--LLKEALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGKALMSGDEFLNQLISSLQ 397


>gi|222097079|ref|YP_002531136.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|229140236|ref|ZP_04268794.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST26]
 gi|221241137|gb|ACM13847.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1]
 gi|228643322|gb|EEK99595.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BDRD-ST26]
          Length = 411

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 162/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + DV++  E I   H I E+        +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG----IAVLDVEEVDEEI--RHFITEQLHTE---EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGREIVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    MN E A              + +RVV +E         
Sbjct: 150 VEKAVQIANNIVFENHPIRIEWMNLEAAKTLPLRK--EPTMIENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLVGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L  H  +I     +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKTIQTMTEKLLYAEANELLQHPTEIHAGILISKMFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEVSKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKKALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMTGDEFLNQLVSSLQ 408


>gi|52081131|ref|YP_079922.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786509|ref|YP_092338.1| hypothetical protein BLi02774 [Bacillus licheniformis ATCC 14580]
 gi|52004342|gb|AAU24284.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349011|gb|AAU41645.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 410

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 164/391 (41%), Gaps = 27/391 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V ++ ++T FY   GGQ  DTG   G    +++ +V +  +G   H+  VER +      
Sbjct: 33  VYIILEETAFYPTGGGQPHDTGTLNG----VKVLNVDE-IDGEIRHY--VERPLPHLNDQ 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V  ID++ R      H+  H+L  A + +   H    G  +  D +  D+  S+ +T  
Sbjct: 86  VVGVIDWERRFDHMQQHTGQHILSAAFAQLYDLHTV--GFHLGNDTVTIDLDVSE-LTEE 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
                E   N+II +N  +V + +  +D +      L   K  + +R+V +         
Sbjct: 143 MAGKAEKLANEIITENRSIVAKWVEYDDLVNYPIRKLPSVK--ENIRLVMI-----DEFD 195

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              CGGTH S+TGE+  + +++    R  I R+  + G R  +    + + +  L   L 
Sbjct: 196 YNGCGGTHPSATGEVGAIKVLNWERQRKKI-RLYFVCGNRVITQFDQKQKAIVELTGLLN 254

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKI--ADVNFMSHIISEVD 805
             +G +   ++ + E  +KL        ++ LQ    +L        D   +    S+  
Sbjct: 255 RPEGELSEAIKRLLENVKKLDKALLESYEKNLQYEANELLAKSAIQNDTVMVIETFSDRS 314

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            +EL+ +   +  + +  +I  +    + +  ++    E   ++ N  DL + +  ++  
Sbjct: 315 IQELQKLAKMIADREKRALIFFLS-ENDHRFQLVCGRGE--ANKMNMRDLMQEALSLI-D 370

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G GGG    AQ GG      ++ +  V + +
Sbjct: 371 GKGGGNKMFAQGGGTASFTKEKFMKNVMNII 401


>gi|254686189|ref|ZP_05150048.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254744780|ref|ZP_05202458.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Kruger B]
 gi|254752980|ref|ZP_05205016.1| alanyl-tRNA synthetase family protein [Bacillus anthracis str.
           Vollum]
          Length = 411

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|164503922|gb|ABY59271.1| alanyl-tRNA synthetase [Dasypogon diadema]
          Length = 183

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGHEAAGLEPDLECKDIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|118478861|ref|YP_896012.1| alanine--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
 gi|118418086|gb|ABK86505.1| alanine--tRNA ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 411

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG        + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETAFYPTGGGQPHDTGTLNS----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKGVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLNQLISSLQ 408


>gi|150019605|ref|YP_001311859.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906070|gb|ABR36903.1| Threonyl/alanyl tRNA synthetase, SAD [Clostridium beijerinckii
           NCIMB 8052]
          Length = 403

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 165/405 (40%), Gaps = 28/405 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EIV+      K  V+ D+T F+   GGQ  D G         ++ DV +K E ++    
Sbjct: 16  AEIVDIKEIDNKFHVILDKTAFFPGGGGQSCDIGTLEDQ----KVIDVYEKEEIVYH--- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +VE+  L+    +  +ID+  R+     H   H+L  +   +  ++              
Sbjct: 69  VVEKKPLKIH-KVKCSIDWDIRQDGMHQHLGQHVLSGSFFNLFNANTFAIHLGSDI---- 123

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             V     +T  +++  E   N +I   LPV + +  + +         L     D +R+
Sbjct: 124 STVDIYGVLTEEQVREAERLANKVIGDALPVESFVPTKAELKKLSLRRALPNTEED-IRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +     G      C G H +ST ++ L+ I      + G  RIE + G+RA S    +
Sbjct: 183 VKI-----GDFDINACCGLHPTSTLDLRLIKIKKFEKHKEG-TRIEFLAGERAISDSFKK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE   S+  +L  ++   +  ++ + +  R+    +    + L    +     +  KI +
Sbjct: 237 DEFQTSICRYLSCNENEAINGIKNLNQNLREANETNKNLNILLAKYQVKEILENAAKINN 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V  +  I    + K + ++   L +      I L+ +  ++K ++L   ++D+ D     
Sbjct: 297 VKVIKQIFDGENLKYVNNLTSKLIE--NENTIALMAVKSDEKVNLLFACSKDIKD-IKMN 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +L + +  ++  G GGG P  AQ  G N +  + A+    + + +
Sbjct: 354 ELLKDAISLI-DGKGGGSPFQAQGAGKNNSNLESAMDYAFNKVSQ 397


>gi|242059365|ref|XP_002458828.1| hypothetical protein SORBIDRAFT_03g041025 [Sorghum bicolor]
 gi|241930803|gb|EES03948.1| hypothetical protein SORBIDRAFT_03g041025 [Sorghum bicolor]
          Length = 439

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 94/403 (23%), Positives = 157/403 (38%), Gaps = 43/403 (10%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  F  + +  G++ LPS  ++P  D    F +  +  F   F G     +    
Sbjct: 13  DAAQVRELFFSYSRGRGYKFLPSGPVLPVGDSKGPF-HGALDHFNQAFLGPAPWSHGHAG 71

Query: 63  T--VQKCVRAGGKHNDLDNVGRTNRHHTFFEM-----------LGNFSFGGYFKERAIQL 109
           +     C+       D         HH+  ++             +     YF +  +  
Sbjct: 72  SAFSLHCINMSDMLVDFS----DPSHHSLMDIFCNCFFEFFCLADSQCLSEYFSKEMV-- 125

Query: 110 AWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-AETGP 168
                         R+Y+T Y +D+E+ ++  K   LS  +++  T   N++      GP
Sbjct: 126 -------TCKFSAGRIYVTCYADDDESREICMKF--LSKKQLLNFTCETNYYIGKNGCGP 176

Query: 169 CGPCSEIFF-DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227
           CGPC++IF+         G    + +GE YIE+ N+V ++ ++++      L      +G
Sbjct: 177 CGPCTKIFYLPSDNRKYHGHSAITIDGETYIELANIVSVEVDKEDDMFW-PLVIKHAVSG 235

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVN------HRVIVDH 278
           +  E + T+LQ K + YD DLF  + +A  +    K   Y GN  V       +R+  DH
Sbjct: 236 INYECLVTLLQHKESFYDTDLFTKMFEAIRKYACNKVQPYSGNASVTCDVDAAYRLFADH 295

Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337
           +R  S   A        GR Y L  I RRA+      L         LL      M   Y
Sbjct: 296 VRIISCASAPQSQLGERGREYFLNFIDRRAIESGHQKLKIEAHFYPELLKVAVIMMDPIY 355

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380
           P+L   K  IEE L++E   + K LD     L      +   +
Sbjct: 356 PDL-NIKDRIEEILKTEMLIYKKALDEIQHELPKSARKMKTKD 397


>gi|229104160|ref|ZP_04234832.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-28]
 gi|228679177|gb|EEL33382.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-28]
          Length = 411

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G      +    ++  G   H    +         +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTLNG-----TLVTNVEEVNGEIRHFIAEQLEA----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLPAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+  + MN E+A          T   + +RVV +E         
Sbjct: 150 IEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRK--ETTLTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEVDS 806
           S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S + +    
Sbjct: 262 SETDIPAKVAQLLISQKENEKAIQTMNEKLLFAEANELLQQPAEIHAGLLISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   + I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEVAKLSAIITEQQEHAITYFI-IENDDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMSGDEFLHQLISSLQ 408


>gi|229075515|ref|ZP_04208503.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-18]
 gi|228707611|gb|EEL59796.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock4-18]
          Length = 411

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 159/394 (40%), Gaps = 29/394 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
             + VV ++T FY   GGQ  DTG   G      +    ++  G   H    +       
Sbjct: 39  DNLYVVLNETAFYPTGGGQPYDTGTLNG-----TLVTNVEEVNGEIRHFIAEQLET---- 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + 
Sbjct: 90  AEVEGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLP 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++      N+I+ +N P+  + MN E+A              + +RVV +E      
Sbjct: 147 AETIEKAVQIANNIVFENHPIRIQWMNLEEAKTLPLRK--EPTLTENIRVVIIEN----- 199

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH   TGE+ L+ +++    + GI R+  I G R    +  Q + +K ++  
Sbjct: 200 FDYNGCGGTHPRRTGEVGLIQVLNWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQ 258

Query: 749 LKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISE 803
           L  S+ ++  +V ++     E  + +Q ++ K       E L    +I     +S +   
Sbjct: 259 LNSSETDIPAKVAQLLISQKENEKAIQTMNEKLLFAEANELLQQPAEIHAGFLISKVFIN 318

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
              +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +
Sbjct: 319 RSMQEVAKLSAIIIEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDALPAI 375

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG    A+ GG      D+ +  + S L+
Sbjct: 376 E-GKGGGNKKSARGGGKAIMSGDEFLHQLISSLQ 408


>gi|199581788|gb|ACH89565.1| alanyl-tRNA synthetase [Alpheus panamensis]
          Length = 186

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 10/186 (5%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           ++    +EIWNLVFMQF +++      LPK  ID GMGLER+ ++LQ++ +NYD DLF  
Sbjct: 1   KDDPDVLEIWNLVFMQFNRESDGSLKTLPKKHIDCGMGLERLVSILQDRKSNYDTDLFTP 60

Query: 252 LIQASEQVTGMKYEGNN---------IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302
           +  A ++++G K               + +RV+ DH R+ +  ++DG +P N GRGYVLR
Sbjct: 61  IFDAIQKLSGAKPYSGKLGKDDPDGIDMAYRVLADHSRTLTIALSDGGMPDNVGRGYVLR 120

Query: 303 RIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361
           RI+RR + YA   L     +   L+  +   +  A+PE+ +     +  +  E+++F KT
Sbjct: 121 RILRRGVRYATEKLKMKPGMFASLVDVVVEILQDAFPEVAKDPEYTKSVINEEEQQFLKT 180

Query: 362 LDRGLV 367
           LDRG  
Sbjct: 181 LDRGQK 186


>gi|228922330|ref|ZP_04085637.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837385|gb|EEM82719.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 411

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 158/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +
Sbjct: 42  YVVLNETVFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-V 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    MN E+A              + +RVV +E      +  
Sbjct: 150 VEKAVQIANNIVFENHPICIEWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKCTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIIKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   ++   
Sbjct: 262 SETDIPAKVAQLLTAQKENEKTIQTMNEKLLFAEANELLQQSIEIHAGLLISKAFTDRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L +     +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKTVTLDMNA--LLKDDLPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAVMNGDEFLNQLVSSLQ 408


>gi|164503928|gb|ABY59274.1| alanyl-tRNA synthetase [Molobratia teutonus]
          Length = 183

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E  ++W K+ G+  + I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGHEQAGLEPDLECKEIWLKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|297519749|ref|ZP_06938135.1| alanyl-tRNA synthetase [Escherichia coli OP50]
          Length = 214

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 7/212 (3%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S+ LCGGTH S TG+I L  I+SES   AG+RRIEA+TG+ A + +    ++L  +A  L
Sbjct: 1   STELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLL 60

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEV 804
           K    N+  +V  + E  R+L+    + K Q   ++          +  V  +   +S V
Sbjct: 61  KGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGV 120

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + K L++++D L+ ++ S II+L  +  E K S++  V++D+ DR  A +L  + A+ + 
Sbjct: 121 EPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV- 178

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 179 GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 210


>gi|147918761|ref|YP_687515.1| alanyl-tRNS synthetase-related protein [uncultured methanogenic
           archaeon RC-I]
 gi|110622911|emb|CAJ38189.1| alanyl-tRNS synthetase-related protein [uncultured methanogenic
           archaeon RC-I]
          Length = 390

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 158/391 (40%), Gaps = 34/391 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+V       K  VV  +T FY E GGQ  D G   G    + +  V ++   ++   A 
Sbjct: 18  EVVNVLNKDGKYHVVLAETNFYPEGGGQPADRGTIAG----IPVEHVYEEGGEVYHVLAF 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                   E ++   +D+  R  L   HS  HLL   +    G         ++ +GL  
Sbjct: 74  A-----PAEKTVACKLDWARRFDLMQQHSGQHLLSAVMYNNHGWETGS--LHMSEEGLSV 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV     +T   LK IED  N+++ ++L + T I+  E+A       +  T     +R+V
Sbjct: 127 DVLTP-DVTPEALKEIEDAANEVVTRDLEIKTHIVTPEEAKKYPNRKIPPT--AGTIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +   D        C GTHV+ TGEI ++ I     ++  + R+    G RA      + 
Sbjct: 184 EISSHDFS-----PCCGTHVARTGEIGIIKITGTQKMKDSM-RLFFKCGGRALRDYQAKQ 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           E +  L+   K  QG ++ R+E    E R    +L   K KL L +E  +  + A    +
Sbjct: 238 EIITKLSQLFKADQGKLLSRIEAHEAEARAHWKELTELKDKL-LKIEAGNLARSASTPVI 296

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
                +    +L S+   L +      IM++    EK+  +L   ++        VD  +
Sbjct: 297 RVAYEDKSFNDLMSLSKYLLQAG--DFIMILASVPEKR--LLFARSKKFD-----VDCGK 347

Query: 858 LSAKVLG--GGGGGGRPHMAQSGGPNGNKAD 886
           L  + L    G GGG+P  A +G  +     
Sbjct: 348 LMKEHLAAFNGKGGGKPEFANAGFSSVEDLQ 378


>gi|164503934|gb|ABY59277.1| alanyl-tRNA synthetase [Dioctria atricapillus]
          Length = 183

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMSKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +  +E        +  ++W K+ G+ A+ I+  + 
Sbjct: 61  EICAWAWELLTERLRLPKDRLYVTYFGGNEQSGLEPDLDCKEIWMKL-GVKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREPDSSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503940|gb|ABY59280.1| alanyl-tRNA synthetase [Choerades bella]
          Length = 183

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT+   L + RLY+T +        + D E   +W  + G+ A+ I+  + 
Sbjct: 61  EICTWAWELLTERLKLPKDRLYVTYFGGNKEAGLEPDYECRDIWLNL-GVKAEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQFNREADGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|166031100|ref|ZP_02233929.1| hypothetical protein DORFOR_00785 [Dorea formicigenerans ATCC
           27755]
 gi|166028947|gb|EDR47704.1| hypothetical protein DORFOR_00785 [Dorea formicigenerans ATCC
           27755]
          Length = 380

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 165/396 (41%), Gaps = 35/396 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +++     G+  +VV D+T F+ E GGQ  DTG   G    + + D Q+K +GI  H+
Sbjct: 16  EAQVISCEPEGEGYKVVLDKTVFFPEGGGQYADTGILGG----VHVLDAQEK-DGIIYHY 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                G L     +   ID++ R +    HS  H++   +    G   +  G  +  D  
Sbjct: 71  ---TDGALTPGEIVKGEIDWEKRFESMQQHSGEHIISGIVHGRFGY--NNVGFHLGADYC 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D     PIT  +LK IE+  N I+ +NL +      +E+       + +  +   +VR
Sbjct: 126 TMDF--DGPITKEQLKEIEEEANRIVYKNLNIEILYPTKEELKDLTYRSKI--EIEGQVR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V++   D        C   HV  TGEI  + +V   S + G  RI  ++G RA +    
Sbjct: 182 IVNIPGVD-----ICACCAPHVDRTGEIGNIKLVDMVSYKGG-ERITMLSGSRALTDHQQ 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           ++E +K +++ L      V   VE++ EE   L+   +  K +L         +     +
Sbjct: 236 KEESVKKISALLCAKDTEVAEAVEKLKEEQLDLKNQVSALKQKLLAYQAKEIDVTP-ELV 294

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
               SE+   E + +M+ L ++      +  G  +E    V+   +ED           R
Sbjct: 295 KVFDSELSGNEPRELMNILLERGAKICAIFAGNDEEGYRYVIGSHSED----------VR 344

Query: 858 LSAKVLG---GGGGGGRPHMAQSGGPNGNK-ADQAI 889
           + +K L     G GGG+P M Q       K   + +
Sbjct: 345 VISKKLNEAFQGRGGGKPQMVQGSLKGTAKNISEIL 380


>gi|299561754|gb|ADJ36949.1| alanyl-tRNA synthetase [Spilogona sp. JFG-2010]
          Length = 183

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  +LW  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLRLPEDRLYVTYFGGDEASGLAPDLECKQLWLDL-GLRPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KSLPK 183


>gi|320451353|ref|YP_004203449.1| alanyl-tRNA synthetase-like protein [Thermus scotoductus SA-01]
 gi|320151523|gb|ADW22901.1| alanyl-tRNA synthetase related protein [Thermus scotoductus SA-01]
          Length = 375

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 147/395 (37%), Gaps = 40/395 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFV 555
           Q  +V      Q   VV  QT FY E+GGQ  DTG   G+  ++++  V +  KA G  V
Sbjct: 14  QARVVRAWSDEQGHHVVLSQTLFYPESGGQPADTGVLKGEFGQVRVLYVFEEAKAFGDVV 73

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H      G +     +   ID+  R +    H+A H+L  AL    G H       ++ D
Sbjct: 74  HRV---DGPIPEGAEVEGEIDWNRRFRHMQRHTAQHILSQALLRAGGYHT----IAVSLD 126

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
                V   + +  A+L+  E   N  +  + P+    ++ E+            K   +
Sbjct: 127 SPVSTVDLEEEVEEAKLQEAEALANFAVYADYPIEAFWVSEEELARYPLRR--PPKVQGQ 184

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR+V +     G    A CGGTH+ ++ +   + ++     + G  R+  + G  A    
Sbjct: 185 VRLVRI-----GDFDLAACGGTHLRTSAQAGPIKVLKWERYKGG-SRVYFMAGWEALEDY 238

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             +   L  LA     S   +   V  + EE   L+  + + K  L    L       V 
Sbjct: 239 HAKHALLSRLALSFSTSPLELEKPVRRLQEEVYALKGENLELKEALVEALLPRALEERVL 298

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +   +       L  +   L    +   ++L   S E + + L    +++L+R  A   
Sbjct: 299 LVPAPV-------LGDLAKRLLSWSEKTFLLL---SPEGRFAALGPGRQEVLERLKA--- 345

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
                    G  GGG+  + Q   P   K   A+ 
Sbjct: 346 --------LGAKGGGK-EVVQGSLPK-EKVAAALD 370


>gi|253795706|ref|YP_003038802.1| putative alanyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253740014|gb|ACT34349.1| putative alanyl-tRNA synthetase [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 701

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 115/409 (28%), Positives = 188/409 (45%), Gaps = 40/409 (9%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           ++ + ++  F+   Q+ GH  + SS +     D  L+F NSGM P K +FT  +      
Sbjct: 3   ASFAQLKNAFIGHCQRWGHLSIASSPVKAAAGDNELLFNNSGMAPLKRLFTSGDSVDSP- 61

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           + +VQ+CVR GGKHND  N+G + RH +FFEM+G FSFG Y +  AI++ W L+     +
Sbjct: 62  LCSVQRCVRLGGKHNDYANIGVSRRHLSFFEMMGAFSFGSYGRRYAIEMVWSLVL-RLGI 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180
             +R+ +TV   D E +  WK ++G     +       N W + +TG CG C+E+F    
Sbjct: 121 RPQRVVVTVGSADSETYAAWKAVAGADCCVVTTYG-EQNVWRVGDTGLCGACTEVFVVY- 178

Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
                           Y E+ N+VF+  E +       L +  +D G+G+ER   V+   
Sbjct: 179 -------------DSSYWELLNVVFVSHELRADGC-VKLARECVDVGVGVERTLAVI--- 221

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300
             N   D++K +      +    +  +   + R +VDHLR +SF+  +G  PA  G GYV
Sbjct: 222 --NQSFDVYKEIGADDAPLA-AAFGTSFGRSLRTVVDHLRCASFVAFEGTAPAATGAGYV 278

Query: 301 LRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357
           LR+++RR++    +       +     L   +   + +       +K  I   L SE + 
Sbjct: 279 LRKLIRRSVTEIMVSSPAPDALAAFKALASLVIDGLCAVDSAAAASKSKILRVLASEAKV 338

Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           F   L RG+               L  + A  L+ THG+P  +   +  
Sbjct: 339 FVDALTRGMRR------------ALTSNGASGLHATHGVPKALAGAVAS 375


>gi|183011912|gb|ACC37885.1| alanyl-tRNA synthetase [Dicranosepsis emiliae]
          Length = 182

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 15/184 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICSWAWEFLTXRLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREADSSL 178

Query: 217 FILP 220
            +LP
Sbjct: 179 KLLP 182


>gi|324327522|gb|ADY22782.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 411

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 158/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +     +G   H  + +         +
Sbjct: 42  YVVLNETAFYPTGGGQPYDTGTL-NDIDVINVEE----IDGEIRHFIVEQLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  +       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSASFWDY--FNIPTIGFHLGRETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    M+ E+A              + +R+V +E         
Sbjct: 150 VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRK--EPNMTENIRIVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKVIGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKTIQTMNEKLLYTEANELLQQPVKIHASILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAFMTGDEFLNQLISSLQ 408


>gi|229047304|ref|ZP_04192903.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH676]
 gi|228724046|gb|EEL75392.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH676]
          Length = 367

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 159/388 (40%), Gaps = 29/388 (7%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            ++T FY   GGQ  DTG    D   + + +      G   H+       L TE  +   
Sbjct: 1   MNETAFYPTGGGQPYDTGTL-NDINVINVEE----INGEIRHYIA---EQLHTED-IEGK 51

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  ++ 
Sbjct: 52  INWERRFDHMQQHAAQHILSAAFWD--HFNMPTIGFHLGKETVTIDLE-TENLHAETVEK 108

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
                N I+ QN P+  + MN E+A              + +RVV +E           C
Sbjct: 109 AIQIANKIVFQNHPIRIQWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDYNGC 161

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           GGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K+++  L  S+ 
Sbjct: 162 GGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKNVSKQLNSSET 220

Query: 755 NVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKEL 809
           ++  +V ++     E  + +Q ++ K       E L    +I     +S + +    +E+
Sbjct: 221 DIPTKVAQLLTSQKENEKAIQTMNEKLLFAEANELLQHPTEIHAGILISKVFTNRSMQEI 280

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G GG
Sbjct: 281 AKLPAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-GKGG 336

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G    A+ GG      D+ +  + S L+
Sbjct: 337 GNKKSARGGGKAIMSGDEFLNQLVSSLQ 364


>gi|229185856|ref|ZP_04313029.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BGSC 6E1]
 gi|228597568|gb|EEK55215.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus BGSC 6E1]
          Length = 411

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 160/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG        + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETAFYPTGGGQPHDTGTLNS----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKGVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKEALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAMMSGDEFLNQLISSLQ 408


>gi|164503902|gb|ABY59261.1| alanyl-tRNA synthetase [Neolophonotus bimaculatus]
          Length = 183

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  +E        E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDHECKEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|229162453|ref|ZP_04290414.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus R309803]
 gi|228620932|gb|EEK77797.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus R309803]
          Length = 411

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 156/391 (39%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV +++ FY   GGQ  DTG    D   + + ++  +   + V     E         +
Sbjct: 42  YVVLNESAFYPTGGGQPYDTGTL-NDIDVINVEEINGEIRHLIVEQLHTE--------EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN E+A              + +RVV +E      +  
Sbjct: 150 VEKAVQIANKIVFENHPIRIEWMNLEEAKTLPLRK--EPNMTENIRVVIIEN-----YDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    +  +++    +S   +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKTIQTMNEKLLFAEANELLQQSIEIHAGLLISKAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTITLDMNA--LLKNALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKVIMSGDEFLNQLVSSLQ 408


>gi|295101312|emb|CBK98857.1| Alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6]
          Length = 394

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 154/389 (39%), Gaps = 30/389 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             +  D T FY E GGQ  D G   + DG  L +TDV  +  GI  H         +   
Sbjct: 33  GRIALDGTVFYPEGGGQPADRGTLTLADGTVLHVTDV-HETNGIIWHTVDALPETTQPGA 91

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++  TID++ R      H+  H+L   L  + G+     G  I  D +R D   S PI++
Sbjct: 92  AVTGTIDWEWRFDKMQQHTGEHILSGILHQMFGA--ENVGFHIGSDAVRMDT--SVPISA 147

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             L+  E   N II +N+PV+      E+  A    +    +   +VR+V++   D    
Sbjct: 148 EGLREAELAANRIIWENVPVLITYPTPEELAALTYRS--KKEIAGQVRIVTIPGAD---- 201

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               C GTH ++TG++  + I++  + + G+ R+  + G RA         +   + + L
Sbjct: 202 -VCACCGTHTAATGQVGQIKILTSENYKGGV-RLSVVCGGRALREAQAMRSRQADIGALL 259

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                     V  +++EY  L+  H     QL   D    ++         +  +D   L
Sbjct: 260 SAKADQTAVAVHRVYDEYTALKFAHFGLCSQLF--DTLAAQLGPDETAIRTVPGLDPDGL 317

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             +   L  +  +G+   +  S++     +     D+     A++ A         G GG
Sbjct: 318 HRLAARL-SEATTGLCAALTPSEKGTGYCIARSGGDVRALTKALNAA-------LNGRGG 369

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+P + Q          +    V  FLKK
Sbjct: 370 GKPGICQGS---CAATPE---QVEEFLKK 392


>gi|164503950|gb|ABY59285.1| alanyl-tRNA synthetase [Laphystia tolandi]
          Length = 183

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPHSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNAEAGLEPDIECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+QF +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQFNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561748|gb|ADJ36946.1| alanyl-tRNA synthetase [Melanina sp. JFG-2010]
          Length = 183

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G  +P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIAEPNSDMSKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT   +L + RLY+T +          D+E  ++W ++ GL  + I+  + 
Sbjct: 61  EICAWAWEFLTHRLNLPKDRLYVTYFGGDASSNLAPDDECRQIWLEL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQDGIL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503892|gb|ABY59256.1| alanyl-tRNA synthetase [Hemigephyra atra]
          Length = 183

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 103/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L   RLY+T +  +E        E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLKLPSDRLYVTYFGGNEQAGLEPDLECKEIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|164503918|gb|ABY59269.1| alanyl-tRNA synthetase [Philonicus albiceps]
          Length = 183

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  +E        E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|183011886|gb|ACC37872.1| alanyl-tRNA synthetase [Heterocheila buccata]
          Length = 183

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 103/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFKE
Sbjct: 1   FLGTADPNSDMSKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKE 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  + W  + G+  + I+    
Sbjct: 61  EICSFAWEFLTDCLKLPKDRLYVTYFGGDEKSSLEADLECQQFWLNL-GVKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGD-RSVPELVNMDDPDVLEIWNLVFIQFNREQNGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|299561762|gb|ADJ36953.1| alanyl-tRNA synthetase [Platypeza sp. JFG-2010]
          Length = 183

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/185 (43%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +Q VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK+
Sbjct: 1   FLGTVAPNSDMAKWQRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGTWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+  +L + RLY+T +  DE        E  ++W  + GL  + ++    
Sbjct: 61  EICAWAWEFLTERLNLPKDRLYVTYFAGDEAAGLEPDTECKQIWLDL-GLLPEHVLPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KPLPK 183


>gi|164503912|gb|ABY59266.1| alanyl-tRNA synthetase [Asilus sericeus]
          Length = 183

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  +EEA         ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEEAGLEPDLECKEIWMNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503908|gb|ABY59264.1| alanyl-tRNA synthetase [Proctacanthus philadelphicus]
          Length = 183

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +  +EEA         ++W+ + G+  + I+  + 
Sbjct: 61  EICSWAWEMLTERLKLPKDRLYVTYFGGNEEAGLEPDNECKEIWQNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|153854643|ref|ZP_01995893.1| hypothetical protein DORLON_01888 [Dorea longicatena DSM 13814]
 gi|149752747|gb|EDM62678.1| hypothetical protein DORLON_01888 [Dorea longicatena DSM 13814]
          Length = 384

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 160/384 (41%), Gaps = 32/384 (8%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           EEA  G    VV DQT F+ E GGQ  DTG        + +TDV +K + I+ +      
Sbjct: 23  EEAKDG--YRVVLDQTVFFPEGGGQYADTGVL----GTVNVTDVHEKDDVIYHY----TT 72

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     +   I+++ R +    H+  H++   +    G   +  G  +  D    D  
Sbjct: 73  APLEVGSIVTGKINWEERFEKMQQHTGEHIVSGIVHERFGY--NNVGFHLGADYCTMDF- 129

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               I+  +LK IE   N+ + Q+L +     ++++       + +  +   +VR+V + 
Sbjct: 130 -DGTISKEQLKEIEAAANEAVYQDLEIEILYPSKDELKDMDYRSKI--EIEGQVRIVKIP 186

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                 +    C   HV +TGEI  + +VS ++ + G  RI  + G+RA      +D   
Sbjct: 187 G-----YDVCACCAPHVKTTGEIGAVKLVSMANYKGG-ERITMLCGRRAMRDYEKKDAMT 240

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHII 801
           K +++ L   +  V   V ++ +E  +++   A  +LQ  + +    +I  +   ++   
Sbjct: 241 KEISALLCAKEYEVADAVGKLKDEQTRMKSQIA--ELQQKLLEFRVAEIPVEEKIVTVFD 298

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           S +     + +M+ L  K      +  G   +    V+   +ED+     A+++A     
Sbjct: 299 SALSGNLPREMMNRLLDKGAVICAVFAGTDTDGYRYVIGSRSEDVRPISKALNVAFE--- 355

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKA 885
               G GGG+P M Q       KA
Sbjct: 356 ----GRGGGKPEMVQGSVKGTGKA 375


>gi|229157195|ref|ZP_04285275.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 4342]
 gi|228626259|gb|EEK83006.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus ATCC 4342]
          Length = 411

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 157/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    L + +V ++           E         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG-ITVLGVEEVNEEIRHFITKQLHTE--------EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  +       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSASFWD--HFNIPTIGFHLGRETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    M+ E+A              + +R+V +E         
Sbjct: 150 VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRK--EPNMTENIRIVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    + A ++    +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKTIQTMNEKLLYAEANELLQQPAKIHASILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAFMTGDEFLNQLISSLQ 408


>gi|164503920|gb|ABY59270.1| alanyl-tRNA synthetase [Tolmerus atricapillus]
          Length = 183

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  +E        E  ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWMSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503904|gb|ABY59262.1| alanyl-tRNA synthetase [Philodicus tenuipes]
          Length = 183

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +  +E        E  ++W+K+ G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWEKL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|228986711|ref|ZP_04146841.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773042|gb|EEM21478.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 411

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 157/391 (40%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    L + +V ++           E         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG-ITVLGVEEVNEEIRHFITKQLHTE--------EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  +       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSASFWDY--FNIPTIGFHLGRETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    M+ E+A              + +R+V +E         
Sbjct: 150 VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRK--EPNMTENIRIVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        KL     +    + A ++    +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKTIQTMNEKLLYAEANELLQQPAKIHASILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTFDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAFMTGDEFLNQLISSLQ 408


>gi|164503976|gb|ABY59298.1| alanyl-tRNA synthetase [Prolepsis tristis]
          Length = 183

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P         V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPKSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ Q+     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNQELDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 RLLPK 183


>gi|164503906|gb|ABY59263.1| alanyl-tRNA synthetase [Pogonioefferia pogonias]
          Length = 183

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +  +EEA         ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPKDRLYVTYFGGNEEAGLEPDHECKEIWQNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503914|gb|ABY59267.1| alanyl-tRNA synthetase [Dysmachus trigonus]
          Length = 183

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  DE        E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKDRLYVTYFGGDEKAGLEPDLECKEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|299561764|gb|ADJ36954.1| alanyl-tRNA synthetase [Lamprogaster nigripes]
          Length = 183

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSEMSKWIRTCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  +LW  + GL  + ++  + 
Sbjct: 61  EICTWAWEFLTDTLHLPKDRLYVTYFGGDEASGLAPDLECKELWLSL-GLKPEHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNQDDPDVLEIWNLVFIQYNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503916|gb|ABY59268.1| alanyl-tRNA synthetase [Machimus occidentalis]
          Length = 183

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLDNVG+   HHTFFEM GN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDNVGKDVNHHTFFEMXGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  +E        E  ++W  + G+  + I+  + 
Sbjct: 61  EICSWAWEMLTDRLKLPKDRLYVTYFGGNEQAGLEPDLECKEIWTNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KQLPK 183


>gi|75762317|ref|ZP_00742198.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228902122|ref|ZP_04066286.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           4222]
 gi|74490200|gb|EAO53535.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228857548|gb|EEN02044.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis IBL
           4222]
          Length = 411

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 152/391 (38%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H  + +         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTL-NDIDVINVEE----IHGEIRHFIVEKLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+   + + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLEI-ENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++   +  N I+ +N  +    MN E A              + +RVV +E         
Sbjct: 150 VEKAINIANKIVFENHQIHIEWMNLEKAKTFPLRK--EPTITENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L   + +   +  +       +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGRAIMSGDEFLNQLVSSLQ 408


>gi|164503910|gb|ABY59265.1| alanyl-tRNA synthetase [Asilus crabroniformis]
          Length = 183

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWIRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITT 156
                AW++LT    L + RLY+T +  ++EA         ++W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTDRLKLPKERLYVTYFGGNKEAGLEPDLECKEIWMNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164504010|gb|ABY59315.1| alanyl-tRNA synthetase [Neoitamus cyanurus]
          Length = 183

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 109/185 (58%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVADPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L + RLY+T +  +E        E  ++W+ + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPKDRLYVTYFGGNEKAGLEPDVECQEIWRSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503978|gb|ABY59299.1| alanyl-tRNA synthetase [Rhabdogaster pedion]
          Length = 183

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+LLT    L + RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWELLTDRLKLPKDRLYVTYFGGHKEAGLEPDLECRDIWMNL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNREQDSSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503888|gb|ABY59254.1| alanyl-tRNA synthetase [Bombylius major]
          Length = 183

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  VT  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGIVDPSSDMAKWVRVTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  +E        E  ++W  + G+  + ++  + 
Sbjct: 61  EICTWAWEFLTDRVGLPKDRLYVTYFGGNEQAGLEPDNECKQIWIDL-GVRPEHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|164503964|gb|ABY59292.1| alanyl-tRNA synthetase [Ommatius tibialis]
          Length = 183

 Score =  211 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW++LT    L   RLY+T +  +E        E   +W  + G+  + I+  + 
Sbjct: 61  EICSWAWEMLTDRLKLPSDRLYVTYFGGNEKAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|229197730|ref|ZP_04324450.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1293]
 gi|228585807|gb|EEK43905.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus m1293]
          Length = 411

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 154/391 (39%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G      + +V ++           E         +
Sbjct: 42  YVVLNETAFYPTGGGQPHDTGTLNG-ITVFGVEEVNEEIRHFITKQLHTE--------EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  +       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSASFWD--HFNIPTIGFHLGRETVTIDLE-TENLHTET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N+I+ +N P+    M+ E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANNIVFENHPIRIEWMDLEEAKTLPLRK--EPNMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  ++++       G  R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIHVLGWER-NKGSIRLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SEADIPVKVAQLLTSQKETEKAMQTMNEKLLYAEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    NA  L + +   +  G
Sbjct: 322 QEIAKLSAIITEQQEHAITYFV-IENEDKLQCILACGKTVTLDMNA--LLKDALPAIE-G 377

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 378 KGGGNKKSARGGGKAIMTGDEFLNQLVSSLQ 408


>gi|218898715|ref|YP_002447126.1| alanyl-tRNA synthetase family protein [Bacillus cereus G9842]
 gi|218543242|gb|ACK95636.1| alanyl-tRNA synthetase family protein [Bacillus cereus G9842]
          Length = 400

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 151/391 (38%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG    D   + + +      G   H  + +         +
Sbjct: 31  YVVLNETAFYPTGGGQPHDTGTL-NDIDVINVEE----IHGEIRHFIVEKLHT----EEV 81

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+   + + +  
Sbjct: 82  EGKINWERRFDHMQQHAAQHILSAAFWD--HFNIPTIGFHLGKETVTIDLEI-ENLHTET 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++   +  N I+ +N  +    MN E A              + +RVV +E         
Sbjct: 139 VEKAINIANKIVFENHQIHIEWMNLEKAKTFPLRK--EPTITENIRVVIIEN-----FDY 191

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++     + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 192 NGCGGTHPKRTGEVGPIQVLGWERNKGGI-RLTFIAGWRTLKLMGQQQQIMKDVSKQLNS 250

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDS 806
           S  ++  +V ++    ++ +        +L   + +   +  +       +S + +    
Sbjct: 251 SGSDIPAKVAQLLTSQKENEKAIQTMNEKLLFAEANELLLQPIKIHADILISKVFTNRSM 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  + K   ++   + +    NA  L + +   +  G
Sbjct: 311 QEIAKLSAIITEQQEHAITYFV-IENDDKLQCILACGKSVSLDMNA--LLKDALPTIE-G 366

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            GGG    A+ GG      D+ +  + S L+
Sbjct: 367 KGGGNKKSARGGGRAIMSGDEFLNQLVSSLQ 397


>gi|218678871|ref|ZP_03526768.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 133

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 95/133 (71%), Positives = 110/133 (82%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTESFDL 120

Query: 121 DQRRLYITVYDED 133
            + RL +TVY ED
Sbjct: 121 PKHRLLVTVYSED 133


>gi|164503960|gb|ABY59290.1| alanyl-tRNA synthetase [Emphysomera pallidapex]
          Length = 183

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 106/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGVVDPNSDMAKWVRVCNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW++LT+   L   RLY+T +        + D E   +W  + G+  + I+  + 
Sbjct: 61  EICTWAWEMLTERLKLPSDRLYVTYFGGHEQAGLEPDLECKNIWLSL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +E+WNLVF+Q+ +++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSL 178

Query: 217 FILPK 221
            +LPK
Sbjct: 179 KLLPK 183


>gi|307692628|ref|ZP_07634865.1| Alanyl-tRNA synthetase, class IIc-like protein [Ruminococcaceae
           bacterium D16]
          Length = 382

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 142/377 (37%), Gaps = 30/377 (7%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           VE    G+K   ++ DQT FY E GGQ  DTG   G    + + +V  + EG  VH    
Sbjct: 18  VESCTQGKKGWDILLDQTAFYPEGGGQPYDTGTLGG----VPVLEV-HQREGWVVHTCAA 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     +   ID+  R  L  +HS  H++     ++ G      G  +  D +  D
Sbjct: 73  ---PLEAGSQVEGQIDWPRRFDLMQHHSGEHIVSGIAHSLYGC--DNVGFHMGSDVITID 127

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  +  +T  ++  +E   N  I ++ P+       ++       +        +VR+VS
Sbjct: 128 L--NVELTPEQVAQLEARANQYIWEDHPIAVTYPTPQELEVLEYRS--KKALTGQVRIVS 183

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               D     +  C GTHVSS+G++ L+ ++S    R G+ RIE + G+RA  +L    E
Sbjct: 184 FPGAD-----TCACCGTHVSSSGQVGLVKLLSCQKFRDGV-RIELVCGKRALDYLSQVWE 237

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           +   +++ L        G V  + +E   L+       ++         +      +   
Sbjct: 238 QNHQISNLLSAKTMQTSGAVRRLLDENAALKSRI--LTMEERQFAALAQRYTGQGDVVVF 295

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
              +    L+ +  A+Q           G         +     DL     A++      
Sbjct: 296 EEGLSPDSLRRLCGAVQAACGGRCACFSGEDGAGYQYAVGQPGGDLRPLAKALN------ 349

Query: 861 KVLGGGGGGGRPHMAQS 877
                G GGG+P   Q 
Sbjct: 350 -QALQGRGGGKPDFIQG 365


>gi|183011896|gb|ACC37877.1| alanyl-tRNA synthetase [Archisepsis scabra]
          Length = 175

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/175 (43%), Positives = 102/175 (58%), Gaps = 10/175 (5%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 3   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 62

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M E
Sbjct: 63  LTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGE 121

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILP 220
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++      +LP
Sbjct: 122 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREADSSLKLLP 175


>gi|183011906|gb|ACC37882.1| alanyl-tRNA synthetase [Dicranosepsis cf. sauteri RM-2008]
          Length = 177

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 79/176 (44%), Positives = 101/176 (57%), Gaps = 15/176 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVF 177


>gi|183011996|gb|ACC37927.1| alanyl-tRNA synthetase [Toxopoda sp. 2 RM-2008]
          Length = 181

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/183 (42%), Positives = 103/183 (56%), Gaps = 15/183 (8%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPFFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++  
Sbjct: 120 GSMKDNFWEMGETGPCGPCSELHFDRIGGX-SVPELVNMDXPDVLEIWNLVFIQFNREAX 178

Query: 214 QER 216
              
Sbjct: 179 ASL 181


>gi|182418186|ref|ZP_02949486.1| dhha1 domain protein [Clostridium butyricum 5521]
 gi|237666298|ref|ZP_04526285.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378004|gb|EDT75544.1| dhha1 domain protein [Clostridium butyricum 5521]
 gi|237658388|gb|EEP55941.1| threonyl/alanyl tRNA synthetase, SAD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 401

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 155/405 (38%), Gaps = 27/405 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EIV       K  V  D+T F+   GGQ  DTG   GD   + +     +   I  H  
Sbjct: 16  AEIVNIEEHLGKFRVTLDKTAFFPGGGGQSCDTGMI-GDHKVIDV----YEENDIVYH-- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           IVE+  ++   ++   ID + R      H   H+L      +  ++              
Sbjct: 69  IVEKKPIKIH-NVKCKIDSERRTDGMCQHLGQHVLSGCFFNLFNANTFAIHLGADI---- 123

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             V     +T  ++++ E   N +I   L V + I  + +         L     + +R+
Sbjct: 124 STVDIYGVLTEEQIRAAERLANKVIGDALKVESFIPTKSELKKLTLRRALPNT-KEDIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +    G       C G H  ST ++ L+ I      + G  RIE ++G RA      +
Sbjct: 183 VKI----GDDFDINACCGLHPKSTLDLRLIKIKKFEKHKEG-TRIEFLSGNRAIEDSYKK 237

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           DE   S+  +L  ++   V  ++ +    ++   I+    + L    +     +   + +
Sbjct: 238 DEFQNSICKYLNCNENEAVNGIKNLNNNLKEANEINKSLNITLANYQVKELIDNAETVGE 297

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
              +  I    + K + ++   L +   +  + L+ +  E K +++   T+ +       
Sbjct: 298 FKIIKSIFDNENLKYINNLTSKLVETPNT--VTLMAVKSEDKVNLIFACTKGI-KEIKVN 354

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           ++ + +  ++  G GGG P MAQ  G N    D A+    + +K+
Sbjct: 355 EVLKDAISLI-DGKGGGSPFMAQGAGKNNANLDGALDYAFNKIKE 398


>gi|253573261|ref|ZP_04850604.1| threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846789|gb|EES74794.1| threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 389

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/399 (22%), Positives = 164/399 (41%), Gaps = 36/399 (9%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           ++      V VV +++ FY   GGQ  DTG   G    + + DV  + + +       + 
Sbjct: 22  DKLEREDGVYVVLEESAFYPHGGGQPNDTGRIGG----IPVLDVISEGDEVLH-----KV 72

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                E  +   ID+  R      HS  HLL      +           +  D    DV 
Sbjct: 73  ERFPEEAQVRCEIDWNRRFDHMQQHSGQHLLSAVCRELY--EAMTLSFHLGEDYCTIDVD 130

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             + ++S +L++IE   N  I  N  +    + +E+A       +   K  DRVR+V +E
Sbjct: 131 RPE-LSSEQLEAIEREANRHIYLNHKISGYFVTQEEASR--LPLVKPPKAVDRVRIVEME 187

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             +        CGGTHV++TG I ++ ++     + G  RI    G RA      Q   L
Sbjct: 188 DVEYNG-----CGGTHVAATGAIGMIKLLKTEK-QKGNVRIFFKCGYRALREFQEQQHIL 241

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSH 799
            S+ + L+  + +++ R+++  +E ++LQ      K  ++   V +L   +   +  ++ 
Sbjct: 242 GSITAKLRTGRDSILERLDKWEDEQKRLQREFDTLKEAMDEMTVRELLTKREGGI--IAQ 299

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           I ++   K+L+S+   L     S   +L+    E+K  +    +  L    +     +  
Sbjct: 300 IFADKSLKDLQSLAQKLTA--HSDAAVLLATEAEQKVVLAHNGSRSL----SCGAFFKEH 353

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                GG GGG   +AQ+G    +  + A+     F+K+
Sbjct: 354 LSA-YGGKGGGSDKLAQAG---FSSWEDAL-TFYEFVKQ 387


>gi|183011892|gb|ACC37875.1| alanyl-tRNA synthetase [Archisepsis pleuralis]
          Length = 173

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/173 (44%), Positives = 102/173 (58%), Gaps = 10/173 (5%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 3   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 62

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M ETGP
Sbjct: 63  RLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGP 121

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           CGPCSE+ FD+           + +    +EIWNLVF+QF ++      +LPK
Sbjct: 122 CGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREADSSLKLLPK 173


>gi|89101059|ref|ZP_01173899.1| hypothetical protein B14911_07628 [Bacillus sp. NRRL B-14911]
 gi|89084232|gb|EAR63393.1| hypothetical protein B14911_07628 [Bacillus sp. NRRL B-14911]
          Length = 398

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 156/377 (41%), Gaps = 26/377 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            S  K   V D+T FY   GGQ  DTG   G    + +TDV+++ EG   H+       L
Sbjct: 28  NSDGKWYAVLDRTAFYPTGGGQPFDTGTIHG----ISVTDVEEE-EGEIRHY---LEERL 79

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +++Q R      HS  H+L  A   + G         +  + L  D+  ++
Sbjct: 80  PESGEVDGRVNWQRRFDHMQQHSGQHILSAAFDELFGYRTVS--FHLGKETLTIDIE-TE 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            ++  E    E   N+II  NLP+ T+ ++  ++  +G      TK  + +R+V +    
Sbjct: 137 NLSEEEAARAERKSNEIITDNLPIETKWVS--ESELAGYPLRKETKVKENIRLVIIP--- 191

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTH  +TGE+  + I+  S  +    R+E + G R    L  ++  +   
Sbjct: 192 --EFDYNGCGGTHPKATGEVQAIKILGWSRQKK-QTRVEFVCGGRVLKQLHTKNVIVNRT 248

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKIADVNFMSHIIS 802
              +   +G +   + ++ +  ++++    + K   L+   ++ +   +     +  +  
Sbjct: 249 GQLISSPEGEIPEAIIKLLDTQKQMEKELEELKNQLLEQEGKEYARSILDGSAIIRKVFR 308

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           + + KEL+ +  ++  +    I++    +  +  +V    T+   D      + +     
Sbjct: 309 DRNVKELQKLAKSIAIQNDQAIVLFAAENGRQLQAVCASGTKTEADMKK---IIQSILPA 365

Query: 863 LGGGGGGGRPHMAQSGG 879
           +  G GGG  H AQ GG
Sbjct: 366 IH-GRGGGNKHFAQGGG 381


>gi|183011882|gb|ACC37870.1| alanyl-tRNA synthetase [Icaridion debile]
          Length = 183

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 102/185 (55%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPV-----YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F     P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLETADPNSEMSRWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + +I    
Sbjct: 61  EICSWAWEFLTDCLKLPKDRLYVTYFGGDESSGLDPDYECRQIWLDL-GLKTEHVIPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGS-RSVPELVNMDDPDVLEIWNLVFIQYNREQNSTL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 MPLPK 183


>gi|261419834|ref|YP_003253516.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC61]
 gi|319766649|ref|YP_004132150.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC52]
 gi|261376291|gb|ACX79034.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC61]
 gi|317111515|gb|ADU94007.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y412MC52]
          Length = 389

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 27/388 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G+   V   +T FY E GGQ  D G   G    L + DV     G   H      G+  
Sbjct: 25  DGETYVVTLAETAFYPEGGGQPSDAGTIAG----LPVLDVF-DENGEVYHRLPAHPGM-- 77

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   +D + RR  +  HS  HLL       LG+     G  +  D +  D+T    
Sbjct: 78  --GVVSCVLDMKRRRDHTQQHSGQHLLSAVFIEQLGAETV--GFHLGRDVVTIDITVD-A 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T +E+ ++E+  N++I  NLPV T  +  E+A                VRVV ++  D 
Sbjct: 133 LTESEMLAVENRANELIYANLPVDTYWVTPEEAERMPFRKR--PDVQGNVRVVEMKGVDL 190

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C GTHV  TGEI ++ ++     R G+ R+  + G RA +        +++ A
Sbjct: 191 S-----ACCGTHVKRTGEIGVIKLLKAERHR-GMTRLSFLCGGRALADYQQTHHIVQAAA 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
                S+  ++  + +  +E ++L+    + +  +   +           +     +  +
Sbjct: 245 GRFGTSRDQLLEVIVKWEQEKKELEKRLRQYEEIVFAVEAKRAAAESGRAVIGRYDQYGA 304

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           KEL+ +   +  +       L+  + + +     V+ +      +A +  +  A  L GG
Sbjct: 305 KELQIIARLIANRYGK--TALLASTPDWR----AVIAKAPSSLLHAGNWLKEQAA-LFGG 357

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            GGG     Q+  P+     Q ++ V +
Sbjct: 358 KGGGNERQGQAAFPSLEALSQFLSRVEA 385


>gi|229061186|ref|ZP_04198536.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH603]
 gi|228718057|gb|EEL69697.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus AH603]
          Length = 411

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 153/391 (39%), Gaps = 29/391 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            VV ++T FY   GGQ  DTG   G    + + +V ++ +G   H    +         +
Sbjct: 42  YVVLNETTFYPTGGGQPHDTGTLNG----IPVINV-EEIDGEIRHFIAEQLHT----EEV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              ID+Q R      H+A H+L  +       ++   G  +  + +  D+  +  ++   
Sbjct: 93  DGKIDWQRRFDHMQQHTAQHILSASFWD--HFNIPTIGFHLGKETVTIDLE-TTNLSIET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P+    MN ++A              + +RVV +E         
Sbjct: 150 VEKAVQIANQIVFENHPIRIEWMNLDEAKKLPLRK--EPTMTENIRVVIIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++       G  R+  I G R+   +    + L  ++  L  
Sbjct: 203 NGCGGTHPKHTGEVGPIQVLGWER-NKGRIRLTFIAGWRSLKLMGQHQQILTDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +        +L      +L     +I     +S   +    
Sbjct: 262 SETDIPAKVAQLLTSQKENEKAVQAMNEKLLFVEANELLQQSEEIHAGTLISRAFTNRSM 321

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           +E+  +   + ++ +  I   V I  E K   ++   + +    N   L + +   + G 
Sbjct: 322 QEVAKLAAIITEQQEHAITYFV-IENEDKLQCILACGKAVTLDMN--TLLKGALPSIEGK 378

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GGG + + A+ GG      D+ +  + S L+
Sbjct: 379 GGGNKKN-ARGGGKAIMSGDEFLNQLVSSLQ 408


>gi|183011942|gb|ACC37900.1| alanyl-tRNA synthetase [Saltella bezzii]
          Length = 177

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 15/179 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W  + GL  + I+    
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWLDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++    
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREADSS 177


>gi|299561728|gb|ADJ36936.1| alanyl-tRNA synthetase [Leopoldius coronatus]
          Length = 182

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/183 (42%), Positives = 103/183 (56%), Gaps = 15/183 (8%)

Query: 51  TGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKER 105
            G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK  
Sbjct: 1   LGTVDPNSEMAKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTE 60

Query: 106 AIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTN 157
             + AW+ LT    L +  LY+T +  DE        E  +LW  I G+  + I+  T  
Sbjct: 61  ICRWAWEFLTNRLQLSKDNLYVTYFGGDEKSGLAPDVECKQLWLDI-GVIPEHIVPGTLK 119

Query: 158 DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF 217
           DNFW M +TGPCGPCSEI FD+           +++    +EIWNLVF+Q+ +++     
Sbjct: 120 DNFWEMGDTGPCGPCSEIHFDRIGG-RSVPELVNQDDPDVLEIWNLVFIQYNREDNGNLL 178

Query: 218 ILP 220
            LP
Sbjct: 179 ALP 181


>gi|205372400|ref|ZP_03225214.1| hypothetical protein Bcoam_02729 [Bacillus coahuilensis m4-4]
          Length = 396

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 162/406 (39%), Gaps = 33/406 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              IV++      + VV ++T FY   GGQ  DTG   G      +    ++ +G   H+
Sbjct: 16  NTHIVQQHKDEIGLYVVLEETIFYPTGGGQPHDTGTMNG-----VVVTQVEREDGEIRHY 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     E  + L +D+  R      H+  H+L  A +  LG         +  D L
Sbjct: 71  IETAL----PEGEVTLELDWNRRFDHMQQHAGQHILSAAFAESLGYETVS--FHLGTDFL 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +T  E    ED  N II    P+ T+ ++RE+ I       +  +  + +R
Sbjct: 125 TIDLKTPS-LTPEEALQAEDLANKIIQDARPIETKWVSREELINYPLRKHISVE--EDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +            CGGTH   T E+  + +      R  + R+  + G R R  L G
Sbjct: 182 LVIIP-----EFDYNACGGTHPRLTSEVGTIKVFDWEKHRGNV-RLHFVCGDRVRQQLQG 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHKI--A 792
           + E +++L S L+  +G +V   E++    +  +      K QL    ++DL  +     
Sbjct: 236 KHEAIRNLTSTLQSPEGKLVEAAEKLLHNQKDQEKEIESLKEQLLSFELKDLVANAATKE 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
              ++    +    KEL+++   + +     +++L  +  ++K  +++    +      A
Sbjct: 296 SYAYIKGAFTHRPIKELQTLAQNITEDHNQMVVVL-TVQNDEKLQLVMAKGSEP-----A 349

Query: 853 VDL--ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           VD+      A  L  G GGG+ ++ Q GG       + +  +   L
Sbjct: 350 VDIRSVAKLAFHLINGKGGGKEYLVQGGGEAVMTPTEFLIQIEELL 395


>gi|228992319|ref|ZP_04152250.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus pseudomycoides DSM
           12442]
 gi|228767344|gb|EEM15976.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus pseudomycoides DSM
           12442]
          Length = 414

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 155/389 (39%), Gaps = 29/389 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           S +K+ V   +T FY   GGQ  DTG         + + V  +     + H I      +
Sbjct: 40  SEEKLYVTLTETAFYPTGGGQPHDTGTLN------EASVVNVEEVEGEIRHFISSELHTK 93

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I++Q R      H+A H+L  A        +   G  +  + +  D+   + 
Sbjct: 94  ---EVTGKINWQRRFDHMQQHTAQHILSAAFWD--HFDIPTIGFHLGKETITIDLDTPE- 147

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++     S     N I+ +N P+  + MN E+A              + +RVV +E    
Sbjct: 148 LSIETATSALQIANQIVFENHPIHIKWMNLEEAKQLPLRK--EPTITENIRVVIIEN--- 202

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             +    CGGTH   TGE+  ++I+     + GI R+  + G R    +    + +K ++
Sbjct: 203 --YDYNGCGGTHPKYTGEVGPIHIIGWERNKGGI-RLTLVAGWRVLKLMKRHQQIIKDVS 259

Query: 747 SFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHII 801
             L  S+ ++  +V ++     E  + LQ ++ K   ++ N        I     +S + 
Sbjct: 260 KQLNSSENDIPNKVTQLLTSQEENEKALQTMNEKLLFVEANKLLQQSIDIHAGTLISKVF 319

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ ++ I  LV    E+K   ++   + +    N   + + +  
Sbjct: 320 THRSMQEITKLSAIITEQNENSITYLV-TENEEKLQCVLACGKAVTANMN--TILKNALP 376

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            +  G GGG    A+ GG      ++ +A
Sbjct: 377 TIE-GKGGGNQKSARGGGKAIITGEEFLA 404


>gi|327441832|dbj|BAK18197.1| predicted metal-dependent hydrolase [Solibacillus silvestris
           StLB046]
          Length = 391

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 159/399 (39%), Gaps = 24/399 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            ++V+         +V + T FY   GGQ  DTG        ++I DV+K       H+ 
Sbjct: 17  AQVVKTGKDETGNFIVLNNTAFYPTGGGQPHDTGWIND----VEIIDVEK-INEEIRHYT 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +   +  E+S    + +  R      H+  H+L  A   +    ++     +  + + 
Sbjct: 72  AADVSNISGEIS--GKLHWSRRFDHMQQHAGQHILSAAFVEL--FDMATVSFHLGTELVT 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+   + ++  +L ++E   N+II +N P+ T+ + +E+            K ++ +R+
Sbjct: 128 IDLNVGE-VSEDQLAAVEKRANEIILENRPIETKWVTKEELAQYNLRK--DVKVDEDIRL 184

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +       +    CGGTH +STG++ L+ I++   ++  I R+  + G R    L  +
Sbjct: 185 VIIP-----DYDYNGCGGTHPTSTGQVGLIKILATEKMKKQI-RVHFVCGNRVLQQLAMR 238

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            + L  +A  L  S+      + +  +  ++ +      + Q N+ +    ++A     +
Sbjct: 239 KQVLSDVARQLSASEEEAANTLRKFTKAAKQTEKSLT--EAQDNLLEFEAKELAKETVAA 296

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
                   + L+ +   + ++    I +LV  + E K   +     +             
Sbjct: 297 ATFENRSIQSLQKLARFITQQNGEAIALLVA-NNEDKLQFVAARGSEQTKSMK---DISA 352

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +A  L  G GGG   + Q GG     A+  I  +   ++
Sbjct: 353 AALPLINGKGGGNDALVQGGGEKAITAEALIKAMKEAVQ 391


>gi|169826273|ref|YP_001696431.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168990761|gb|ACA38301.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 152/395 (38%), Gaps = 22/395 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           + +E     +  VV   T FY   GGQ  DTG   G    + + DV+K  E I  +   +
Sbjct: 54  VSKEIDELGRHYVVLSNTAFYPTGGGQPHDTGTLNG----IDVIDVEKNGEEIRHY---M 106

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +  I   +  +  T+++  R      H+  H+L  A   +  +        +    +  D
Sbjct: 107 QGDISELKGIVHGTLNWSRRFDHMQQHAGQHILTAAFVELFDAQTVS--FHLGSQHVTID 164

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +     +T  +L + E   N++I +NLP+ T  +   + +       +     D   V+ 
Sbjct: 165 IAVDT-LTEQQLAAAEARANEVILENLPIETTWITENELVHYHLRKEVAVA-GDIRLVII 222

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
             Y+  G      CGGTH +STG++  + I+    ++  + R+  + GQR    L  + +
Sbjct: 223 PNYDYNG------CGGTHPTSTGQVNAIKILGTEKMKGNV-RVSFVCGQRVLHELAMRKK 275

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L  +A  L V +      + +I    +  +      K +L   +         N M+  
Sbjct: 276 VLGDVARQLSVPEVEAATALTKILSAQKHTERALVAAKEELLTYEAKALVSNSGNLMTAA 335

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             +   +EL+ +   +  +    I +LV  S E K   +    +++     A       A
Sbjct: 336 FQQRTMQELQKLARTIVSEHDDMITLLVSES-EGKLQFVAARGKNVSKSMKA---IAEKA 391

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             L  G GGG   M Q GG      ++ +  + + 
Sbjct: 392 LPLINGKGGGSDQMVQGGGECIISKEELLEAIQNI 426


>gi|260881608|ref|ZP_05404819.2| putative alanyl-tRNA synthetase domain-containing protein 1
           [Mitsuokella multacida DSM 20544]
 gi|260848372|gb|EEX68379.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Mitsuokella multacida DSM 20544]
          Length = 390

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 155/404 (38%), Gaps = 24/404 (5%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E+V          VV DQT F++E GGQL DTG     G  L +T V +KA  IF   
Sbjct: 6   EAEVVRTEPYHGGFAVVLDQTVFFSEGGGQLSDTGTLTAAGKVLAVTHVHEKAGEIFH-- 63

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
               +  L     +   +D+Q R      H   H+L +A   + G+H    G  ++ D  
Sbjct: 64  --ETKEPLEPGTKVQAKLDWQVRFDHMQQHCGEHMLSYAFYKLFGAH--NVGFHMSAD-- 117

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
              +   K +   +    E   N  I ++ P+ T+++  E+A           K    +R
Sbjct: 118 MVGIDLDKEVDWQQALQAERFTNRQIQEDRPITTKLVPAEEAAKMNLRK-FNDKLTGILR 176

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +VSVE  D     S  C GTH +S+G + L+ I      + G  R+  + G+ A   +  
Sbjct: 177 IVSVEGSD-----SCTCCGTHPTSSGMVGLVKIFKVEKHKEG-SRVSFLCGREALERVEQ 230

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADV 794
                   ++ L + +  +   V  + +E ++L     +   + L+  + ++  H  A  
Sbjct: 231 YMLAALDASNLLSIKETELPDGVARLQQEKKELSERLTECTGKLLEYRIAEMQAHPTATK 290

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS--KEKKASVLIVVTEDLLDRFNA 852
                 +  ++   +     AL K++         I     ++ + + + T+      + 
Sbjct: 291 AGHKKFV-FLEPDMMPKEAKALAKRLGEIPESFSAIFYRNGERLNYMFLATDGA--ELSC 347

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             + R   +   GG GGGRP   Q               + S L
Sbjct: 348 QQVIRTVNEAF-GGRGGGRPESCQGSAACPEDWQAKAEALMSVL 390


>gi|183011884|gb|ACC37871.1| alanyl-tRNA synthetase [Gluma nitida]
          Length = 177

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 76/179 (42%), Positives = 102/179 (56%), Gaps = 15/179 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      ++ V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVSPNVEMSKWKRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + I+    
Sbjct: 61  EICAWAWEFLTDRLKLPRERLYVTYFGGDETCGLAPDMECRQIWLDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++   +
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREQNGD 177


>gi|299561744|gb|ADJ36944.1| alanyl-tRNA synthetase [Heterophlebus versabilis]
          Length = 183

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/185 (43%), Positives = 107/185 (57%), Gaps = 15/185 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT +  L + RLY+T +          D E  ++W KI G+  + +I    
Sbjct: 61  EICTWAWEFLTDKLKLPKDRLYVTYFGGHQESGLKPDLECKEIWLKI-GVKPEHVIPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
           NDNFW M ETGPCGPCSE+ FD+           +++    +EIWNLVF+QF ++   + 
Sbjct: 120 NDNFWEMGETGPCGPCSELHFDRIGE-RSVPELVNQDDPDVLEIWNLVFIQFNREIDGKL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 KSLPK 183


>gi|183011994|gb|ACC37926.1| alanyl-tRNA synthetase [Toxopoda sp. 1 RM-2008]
          Length = 180

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/181 (42%), Positives = 102/181 (56%), Gaps = 15/181 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFXREADTSL 178

Query: 217 F 217
            
Sbjct: 179 K 179


>gi|183011998|gb|ACC37928.1| alanyl-tRNA synthetase [Zuskamira inexpectata]
          Length = 180

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/181 (41%), Positives = 100/181 (55%), Gaps = 15/181 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW  LT+   L + RLY+T +        + D E  ++W  + GL  + I+    
Sbjct: 61  EICTWAWQFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQIWMDL-GLKPEHILPGNM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREADSSL 178

Query: 217 F 217
            
Sbjct: 179 K 179


>gi|183011926|gb|ACC37892.1| alanyl-tRNA synthetase [Meroplius fukuharai]
          Length = 175

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 15/177 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICSWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREAD 175


>gi|323489249|ref|ZP_08094481.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323397136|gb|EGA89950.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 393

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 147/387 (37%), Gaps = 31/387 (8%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
            + +++          VV DQ+ FY E GGQ  DTG         ++ DVQ   +G   H
Sbjct: 15  TEVDVINSGKDDHGHYVVLDQSCFYPEGGGQPADTGEI----GPAKVWDVQ-LIDGEIRH 69

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           +   E      +   V  +D Q R      H+  HLL        G  +      +  + 
Sbjct: 70  YTDREL----EKERFVAQLDEQRRWDHMQQHAGQHLLSALFEDTYG--LKTQSFHLGKER 123

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           +  D+         +++ IE   N++I Q LP+ TR +  E A             +  +
Sbjct: 124 VTIDLDLDTAT-KEQIQVIEKKANELIGQALPISTRWVTSEKADTLKLRK--PPVVDGEI 180

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R+V +E  D        CGGTH  +T EI LL I+S    + G+ R+  + G RA  +  
Sbjct: 181 RLVEIEGIDLN-----ACGGTHPKNTAEIGLLKIISTEKSKGGM-RVYFLCGDRALQYFN 234

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN- 795
              E    L   L      +   VE +  +  K  +    + LQ  + +L    I   N 
Sbjct: 235 FLSETTDQLVVKLNAPAAELTQAVETLLAD--KATMSKTIKSLQEQLLNLEAKTIVPENH 292

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +  +      KEL+ +   +  +  + I + +  S E     +    ED L      D+
Sbjct: 293 LIQEVFENRSIKELQQLARLVISEHPTAIALFIS-STEGDMRFVCAKGEDAL-----GDM 346

Query: 856 ARLSAK--VLGGGGGGGRPHMAQSGGP 880
             +  +  VL  G GGG    AQ GG 
Sbjct: 347 REVLKQLLVLTDGKGGGNVQFAQGGGK 373


>gi|313112949|ref|ZP_07798593.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624714|gb|EFQ08025.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 149/389 (38%), Gaps = 30/389 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             +  D T FY E GGQ  D G   + DG  L +TDV +  +GI  H             
Sbjct: 33  GRIALDGTVFYPEGGGQPADRGTLTLPDGTTLNVTDVHEH-DGILWHSVDALPESAVPGT 91

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   ID++ R      H+  H+L   L  + G+     G  I  + +R D   S PI++
Sbjct: 92  AVSGCIDWEWRFDKMQQHTGEHILSGILHQMFGA--ENVGFHIGSEAVRMDT--SVPISA 147

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             L++ E   N I+ Q++PV+     RE+  A    +    +   +VR+V++   D    
Sbjct: 148 EGLQAAELAANRIVWQDVPVLVSYPTREELAALVYRS--KKEIEGQVRIVTIPGAD---- 201

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               C GTH  +TG++  + I++  + + G+ R+  + GQRA        ++   + + L
Sbjct: 202 -VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCGQRALLAAQAMRQRQAEIGALL 259

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                     V  I++EY  L+  H     QL   D               +  +D   L
Sbjct: 260 SAKADQTAVAVHRIYDEYTALKFTHFGVCSQLF--DALAQLANPGENAIRTVPGLDPDGL 317

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             +   L +        L    K      +     D+     A++ A         G GG
Sbjct: 318 HRLAVRLTEATTGLCAALTPTEK-GTGYCIAQADGDVRALTKALNAA-------LNGRGG 369

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+P + Q           A   V  FL++
Sbjct: 370 GKPGICQGSC------AAAPEQVEEFLRE 392


>gi|228998375|ref|ZP_04157966.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock3-17]
 gi|228761296|gb|EEM10251.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock3-17]
          Length = 400

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 155/389 (39%), Gaps = 29/389 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           S +K+ V   +T FY   GGQ  DTG         + + V  +     + H I      +
Sbjct: 26  SEEKLYVTLTETAFYPTGGGQPHDTGTLN------EASVVNVEEVEGEIRHFISSELHTK 79

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I++Q R      H+A H+L  A        +   G  +  + +  D+   + 
Sbjct: 80  ---EVTGKINWQRRFDHMQQHTAQHILSAAFWD--HFDIPTIGFHLGKETITIDLDTPE- 133

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++     S     N I+ +N P+  + MN E+A              + +RVV +E    
Sbjct: 134 LSIETATSALQIANQIVFENHPIHIKWMNLEEAKQLPLRK--EPTITENIRVVIIEN--- 188

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             +    CGGTH   TGE+  ++I+     + GI R+  + G R    +    + +K ++
Sbjct: 189 --YDYNGCGGTHPKYTGEVGPIHIIEWERNKGGI-RLTLVAGWRVLKLMERHQQIIKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHII 801
             L  S+ ++  +V ++     E  + LQ ++ K   ++ N        I     +S + 
Sbjct: 246 KQLNSSENDIPNKVTQLLTSQEENEKALQTMNEKLLFVEANKLLQHSIDIHAGTLISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ ++ I  LV    E+K   ++   + +    N   + + +  
Sbjct: 306 THRSMQEITKLSAIITEQNENSITYLV-TENEEKLQCVLACGKAVTANMN--TILKNALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            +  G GGG    A+ GG      ++ +A
Sbjct: 363 TIE-GKGGGNQKSARGGGKAIITGEEFLA 390


>gi|255526550|ref|ZP_05393458.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|296187528|ref|ZP_06855923.1| DHHA1 domain protein [Clostridium carboxidivorans P7]
 gi|255509735|gb|EET86067.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|296048050|gb|EFG87489.1| DHHA1 domain protein [Clostridium carboxidivorans P7]
          Length = 391

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 92/402 (22%), Positives = 172/402 (42%), Gaps = 29/402 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  +++      KV VV D+TPFY E GGQ  DTG   G    ++++ V +K E I+ H 
Sbjct: 16  EANVLDIIEEDGKVLVVLDKTPFYPEGGGQPSDTGTIDG----IKVSYVSEKGEIIYHHM 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                        +  +ID++ R      HS  HLL  A+  + G   +  G  +  + +
Sbjct: 72  DKAPENK-----KVKCSIDFERRFDHMQQHSGEHLLSGAIYKLYGG--NNKGFHLGEEYV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+    P T   +K +ED VN+ I  N    T I+ +++     A   +    ++ +R
Sbjct: 125 TVDIDID-PFTEDMVKKVEDEVNEYIYANRSFDTYIVTKDEVDKVPARKKINV--DEDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V     +        C GTHV +T E+ ++ I+       G+ RI    G+RA      
Sbjct: 182 IV-----EAKDMDCCPCCGTHVKTTSEVGIVKILKAERY-KGMTRIYIKCGKRAFKDFQV 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCHKIADVNF 796
           + + + SL   L V +  ++ RV + +EE   L+   ++ K  +  +E  S  K A    
Sbjct: 236 KHDIITSLNKVLSVDENGILDRVNKQFEEIESLKRESSRSKSTIAGIEAESIIKNAKSKL 295

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +S    + + ++++ +   L+ K   G I++    ++KK   L     +     +   L 
Sbjct: 296 ISIQFEDKNFEDIQLIGSILENK---GYIVIFASLEDKKILFL----NNTDIDISCGKLF 348

Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +   +    G GGG+   AQ    N     +    +++ +++
Sbjct: 349 KEHIREFN-GKGGGKDKRAQGTFDNKEDLTKFCELLSATVRE 389


>gi|183011916|gb|ACC37887.1| alanyl-tRNA synthetase [Dicranosepsis javanica]
          Length = 176

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 76/177 (42%), Positives = 101/177 (57%), Gaps = 15/177 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT    L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTDRLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREAD 175


>gi|167757739|ref|ZP_02429866.1| hypothetical protein CLOSCI_00070 [Clostridium scindens ATCC 35704]
 gi|167664621|gb|EDS08751.1| hypothetical protein CLOSCI_00070 [Clostridium scindens ATCC 35704]
          Length = 384

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 155/385 (40%), Gaps = 36/385 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E+++      K EVV D+T F+ E GGQ  DTG        +++ DV+++ + IF   
Sbjct: 16  EAEVLDCRPVKDKYEVVLDRTAFFPEGGGQYADTGYL----DDVEVLDVKEREDVIFHTT 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           A      L     +   ID++ R      H+  H++   +    G      G  +  D  
Sbjct: 72  AA----PLEIGRMVAGRIDWEQRFDRMQQHTGEHMVSGLIHRRFGY--DNVGFHLGSDYC 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D   + PI    LK IE   N  + QNL +     ++++       + +  + + +VR
Sbjct: 126 TMDF--NGPIPREALKEIEQEANRAVFQNLDIQISYPSKKELKELEYRSKI--EIDGQVR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V+V       +    C   HV  TGEI L+ +V  +  + G  RI  + G+RA      
Sbjct: 182 IVTVPG-----YDVCACCAPHVKRTGEIGLIKLVGMAKYKGG-ERISMLCGRRALLDYEI 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +DE  K +++ L   +  V   VE + EE   L     K KL    + L  ++ A +   
Sbjct: 236 KDENAKRISALLCAKEYEVADAVERMKEEQASL-----KGKLASLQQKLLSYQAAQIPVE 290

Query: 798 SHIISEVDS----KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
             + +  D        + +M+ L  +      +  G        V+    ED+       
Sbjct: 291 GKVTAVFDPSLSGNAPRDLMNLLLGRGAVVCAVFTGTDDLGYRYVIGSGREDVRP----- 345

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSG 878
            L R+  +    G GGG+P MAQ  
Sbjct: 346 -LCRMLNEAFE-GRGGGKPEMAQGS 368


>gi|219850409|ref|YP_002464842.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aggregans DSM
           9485]
 gi|219544668|gb|ACL26406.1| Threonyl/alanyl tRNA synthetase SAD [Chloroflexus aggregans DSM
           9485]
          Length = 408

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 154/377 (40%), Gaps = 25/377 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           +  D++ FY E GGQ  D G         R  + DVQ    G+  H    +  +     S
Sbjct: 33  LALDRSAFYPEGGGQPADHGWLTDADSRQRWAVQDVQ-SDNGVVWHIMSDDEPLPTAGNS 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++  ID+  R      H   H+L  A      +        ++   +  D+  S  +   
Sbjct: 92  VIGQIDWTRRFDHMQQHCGQHILTAAFIATCNAPTVS--FHLSERSVTIDLAIST-LNDE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           + ++ +   N  I QNLP+  R +   +              N++VRVVS+     G   
Sbjct: 149 QAQAAKAWANTAIWQNLPIQARFVTPTELAHIPLRK--PPTVNEQVRVVSI-----GDID 201

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            + CGGTH + +GE+  + I+  S  + G+ R+E + G R  + L  +D   +  A+ L 
Sbjct: 202 HSACGGTHPARSGEVGAIAILGWSR-QRGMIRVEFVCGGRVIAALHERDRAARGAAAVLS 260

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVD 805
           V    +   +  + E  + LQ    + + +L+    +        +     ++  +    
Sbjct: 261 VGWTELPQAIARLQETQQALQRELTQTQRELDALRATQWYTQTPPVDGRRIVTVTLPTAS 320

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            + L+S+   + + +  GI ++ G ++  +  +++    D     +A ++      VL G
Sbjct: 321 IERLRSIAGFIAE-LPGGIAIVAGGTE--RVQIVVACAADT--GADAREILAAGMSVL-G 374

Query: 866 GGGGGRPHMAQSGGPNG 882
           G GGG+ H+AQ GG   
Sbjct: 375 GRGGGQMHLAQGGGGQP 391


>gi|302874189|ref|YP_003842822.1| Alanyl-tRNA synthetase, class IIc-like [Clostridium cellulovorans
           743B]
 gi|307689551|ref|ZP_07631997.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           cellulovorans 743B]
 gi|302577046|gb|ADL51058.1| Alanyl-tRNA synthetase, class IIc-like [Clostridium cellulovorans
           743B]
          Length = 401

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 155/395 (39%), Gaps = 32/395 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+       +  V  D+T FY E GGQ  DTG         ++T V +  +GI  H  
Sbjct: 16  AEIINILEKDNEFHVELDKTYFYPEGGGQPSDTGFIETS----KVTYVYE-DQGIIYH-- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V             ++D+  R      H   H+L  A   +   +V+     +  +   
Sbjct: 69  -VVDKKPIKLKKTKCSLDWNRRFDHMQQHLGQHILSAAFLEL--FNVNTIAFHLGSENCT 125

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+   KP+T AE++  E   N  I +N+ V     ++ +         +  K ND +R+
Sbjct: 126 IDL--DKPLTDAEIREAESLANKTILENINVEFLFPSKAELKKFHIKKTIP-KTNDAIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +            C G H +ST E+ ++ I      + GI R+E + G R        
Sbjct: 183 VKI-----DDFDINPCCGLHPNSTLEVQIIKIKKYEKHKTGI-RLEFLCGNRGIKDSFII 236

Query: 739 DEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           ++ +  L   LK +    +         ++ +  E ++L+ I A  +++  +++    K+
Sbjct: 237 EDFVTKLCRTLKCNHEEALENITKQSTNIKNLLAENKELKSIIADYEVKTMIDN--GEKV 294

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
            D+  +  I    D K +  +   L       +++L  +     A +L + + ++L+  N
Sbjct: 295 KDITIIKTIHDTDDFKYVNLLASKLT--TFDNVVVLFAVKTSDMAKLLFMCSRNILN-LN 351

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              L +  A  L  G GGG    AQ GG N     
Sbjct: 352 MGTLLKD-AITLIDGNGGGSNISAQGGGKNIGNLQ 385


>gi|225026308|ref|ZP_03715500.1| hypothetical protein EUBHAL_00549 [Eubacterium hallii DSM 3353]
 gi|224956372|gb|EEG37581.1| hypothetical protein EUBHAL_00549 [Eubacterium hallii DSM 3353]
          Length = 387

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 150/376 (39%), Gaps = 29/376 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +   ++ ++T FY E GGQ  D G   G+    ++ DVQ   +G   H   + +  L+  
Sbjct: 28  EGYYIILNETAFYPEGGGQPADKGTIEGE----EVLDVQ-YVDGEICH---IMKKPLKAG 79

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +V  I+++ R  L   HS  H++   +    G      G  +  + +  D+  S  +T
Sbjct: 80  EQVVGRINWEWRFDLMQQHSGEHIVSGMIHEKYGY--ENVGFHMGEEVITIDL--SGMLT 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++  IE  VND I  N  V       ++            +    +R+V     D   
Sbjct: 136 EEQVAEIEQKVNDYIWMNQEVNIFY--PDERQRKLIPYRSKKELTGEIRLVEFPGADL-- 191

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G HV+   +I L+ I+S    R G+ R+E ++G+RA  +L    E+   +A  
Sbjct: 192 ---CACCGLHVTHASQIGLVKILSSKKFRDGV-RMEMLSGKRALEYLSKSAEQNSQVAVR 247

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           L V +      V+ + +E   L+   A  K Q + E ++   +   N +  I  +++  E
Sbjct: 248 LSVKEKETKDAVQRLLDEVYNLKGELAAEK-QKHFEQIAASCVGKENVL-LIEGDMEPVE 305

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           ++   DA+            G  K+     +     D+       +L +   K L  G G
Sbjct: 306 VRKCTDAILDTCSGVAAFFAGNDKDGYKYAIGQREGDVR------ELVKQVNKELN-GRG 358

Query: 869 GGRPHMAQSGGPNGNK 884
           GG+P  AQ       K
Sbjct: 359 GGKPFFAQGSLKATRK 374


>gi|297530207|ref|YP_003671482.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. C56-T3]
 gi|297253459|gb|ADI26905.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. C56-T3]
          Length = 389

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 27/388 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G+   V   +T FY E GGQ  D G   G    L + DV     G   H      G+  
Sbjct: 25  DGETYVVTLAETAFYPEGGGQPSDAGTIAG----LPVLDVF-DENGEVYHRLPAHPGM-- 77

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   +D + RR  +  HS  HLL       LG+     G  +  D +  D+T    
Sbjct: 78  --GVVSCVLDMKRRRDHTQQHSGQHLLSAVFIEQLGAETV--GFHLGRDVVTIDITVD-A 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +T +E+ ++E+  N++I  NLPV T  +  E+A                VRVV ++  D 
Sbjct: 133 LTESEMLAVENRANELIYANLPVDTYWVTPEEAERMPFRKR--PDVQGNVRVVEMKGIDL 190

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  C GTHV  TGEI ++ ++     R G+ R+  + G RA +        +++ A
Sbjct: 191 S-----ACCGTHVKRTGEIGVIKLLKAERHR-GMTRLSFLCGGRALADYQQTHRVVQAAA 244

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
                S+  ++  + +  +E ++L+    + +  +   +           +     +  +
Sbjct: 245 GRFGTSRNQLLEVIAKWEQEKKELEKRLRQYEEIVFAVEAERAAAESGRAVIGRYDQYGA 304

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           KEL+ +   +  +       L+  + + +     V+ +      +A +  +     L GG
Sbjct: 305 KELQMIARLIADRYGK--TALLASTPDWR----AVIAKSPSSLLHAGNWLKEQ-TALFGG 357

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVAS 894
            GGG     Q+  P+     Q ++ V +
Sbjct: 358 KGGGNERQGQAAFPSLEALSQFLSRVEA 385


>gi|225568685|ref|ZP_03777710.1| hypothetical protein CLOHYLEM_04763 [Clostridium hylemonae DSM
           15053]
 gi|225162184|gb|EEG74803.1| hypothetical protein CLOHYLEM_04763 [Clostridium hylemonae DSM
           15053]
          Length = 385

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/405 (22%), Positives = 165/405 (40%), Gaps = 45/405 (11%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E++     G++ ++V D+T F+ E GGQ  DTG   G    +++TD  +K EG+  H 
Sbjct: 16  EAEVLACEPFGEQYKIVLDETAFFPEGGGQYADTGWIGG----VRVTDAHEK-EGVIFHT 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           A    G L     +  TID+  R +    HS  H++   +    G      G  +  D  
Sbjct: 71  A---GGPLVPGTKVKGTIDWDERFEKMQQHSGEHIVSGLIHQKFGY--DNVGFHLGSDYC 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D   + PIT  EL  IE   N+ + +NL +     ++E+       + +  +   +VR
Sbjct: 126 TLDF--NGPITREELCGIETMANEAVFRNLDIQVSYPSKEELEHIDYRSKI--EIEGQVR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V+V       +    C   H+  TGEI L+ +    + + G  RI  + G RA      
Sbjct: 182 IVTVPG-----YDVCACCAPHMDKTGEIGLIKLTDMVNYKGG-ERISMLCGFRALRDYRQ 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-- 795
           ++  +K++++ L   +      V  + EE      +  K K+    + +  +K A+++  
Sbjct: 236 KECNVKAISALLCAREEETAEAVGHLKEEQ-----VRQKGKIASLQQKMLTYKAAEISTD 290

Query: 796 --FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
               +    E+     + +M+ L  +      +L G  +E    V+   TED        
Sbjct: 291 GAVAAVFDPELSGNGPRELMNLLLDRGARVCAVLAGTDEEGYRYVIGSRTED-------- 342

Query: 854 DLARLSAKVLGG---GGGGGRPHMAQSG--GPNGNKADQAIAGVA 893
              R   + L     G GGG+P M Q    G   ++  + +    
Sbjct: 343 --VRQLCRELNDRFSGKGGGKPEMVQGSLVGK-ASEIRRFLEEAQ 384


>gi|229005861|ref|ZP_04163555.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock1-4]
 gi|228755325|gb|EEM04676.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus mycoides Rock1-4]
          Length = 400

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 154/389 (39%), Gaps = 29/389 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           S +K+ V   +T FY   GGQ  DTG         + + V  +     + H I      +
Sbjct: 26  SEEKLYVTLTETAFYPTGGGQPHDTGTLN------EASVVNVEEVEGEIRHFISSELHTK 79

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   I++Q R      H+A H+L  A        +   G  +  + +  D+   + 
Sbjct: 80  ---EVTGKINWQRRFDHMQQHTAQHILSAAFWD--HFDIPTIGFHLGKETITIDLDTPE- 133

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           ++     S     N I+ +N P+  + MN E+A              + +RVV +E    
Sbjct: 134 LSIETATSALQIANQIVFENHPIHIKWMNLEEAKQLPLRK--EPTITENIRVVIIEN--- 188

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             +    CGGTH   TGE+  ++I+     + GI R+  + G R    +    + +K ++
Sbjct: 189 --YDYNGCGGTHPKYTGEVGPIHIIEWERNKGGI-RLTLVAGWRVLKLMERHQQIIKDVS 245

Query: 747 SFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRK-LQLNVEDLSCHKIADVNFMSHII 801
             L  S+ ++  +V ++     E  + LQ ++ K   ++ N        I     +S + 
Sbjct: 246 KQLNSSENDIPNKVTQLLTSQEENEKALQTMNEKLLFVEANKLLQHSIDIHAGTLISKVF 305

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           +    +E+  +   + ++ ++ I  LV    E+K   ++   + +    N   + + +  
Sbjct: 306 THRSMQEITKLSAIITEQNENSITYLV-TENEEKLQCVLACGKAVTANMN--TILKNALP 362

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIA 890
            +  G GGG    A+ GG       + +A
Sbjct: 363 TIE-GKGGGNQKSARGGGKAIITGKEFLA 390


>gi|299561730|gb|ADJ36937.1| alanyl-tRNA synthetase [Thecophora occidensis]
          Length = 173

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/177 (45%), Positives = 105/177 (59%), Gaps = 19/177 (10%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWTRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
              + AW+ LT    L    LY+T +          D E  +LW ++ G++ D I+  T 
Sbjct: 61  EICRWAWEFLTVCLKLPIDNLYVTYFGGDSQCSLPPDLECKQLWIEL-GITPDHIVAGTM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            DNFW M ETGPCGPCSEI FD+  G  +P      +++    +EIWNLVF+QF ++
Sbjct: 120 KDNFWEMGETGPCGPCSEIHFDRIGGRNVPE---LVNKDDPDVLEIWNLVFIQFNRE 173


>gi|183011898|gb|ACC37878.1| alanyl-tRNA synthetase [Australosepsis frontalis]
          Length = 173

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/173 (43%), Positives = 96/173 (55%), Gaps = 15/173 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPXFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 122 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWN 173


>gi|255761630|gb|ACU32858.1| alanyl-tRNA synthetase [Dicranosepsis revocans]
          Length = 174

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/173 (43%), Positives = 97/173 (56%), Gaps = 15/173 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT    L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTXRLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWN 174


>gi|164503962|gb|ABY59291.1| alanyl-tRNA synthetase [Afroestricus chiastoneurus]
          Length = 166

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 101/168 (60%), Gaps = 10/168 (5%)

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
              QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW++LT+   L 
Sbjct: 1   CNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEMLTERLKLP 60

Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173
             RLY+T +  +E        E   +W  + G+  + I+  +  DNFW M ETGPCGPCS
Sbjct: 61  SDRLYVTYFGGNEQAGLEPDLECKNIWLNL-GVKPEHILPGSMKDNFWEMGETGPCGPCS 119

Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           E+ FD+           + +    +E+WNLVF+Q+ +++     +LPK
Sbjct: 120 ELHFDRIGG-RSVPELVNMDDPDVLEVWNLVFIQYNRESDGSLKLLPK 166


>gi|226328742|ref|ZP_03804260.1| hypothetical protein PROPEN_02642 [Proteus penneri ATCC 35198]
 gi|225201928|gb|EEG84282.1| hypothetical protein PROPEN_02642 [Proteus penneri ATCC 35198]
          Length = 228

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/218 (38%), Positives = 123/218 (56%), Gaps = 10/218 (4%)

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS +    LRFD +H + +   +L+ IED VN  I  N PVVT +M+ EDA   GA AL
Sbjct: 5   KGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVTELMDLEDAKEKGAMAL 64

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            G KY++RVRV+++     G  S+ LCGGTH S TG+I L  IVSES   AGIRRIEAIT
Sbjct: 65  FGEKYDERVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIVSESGTAAGIRRIEAIT 119

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED-- 785
           G  A   +  Q + +  +A  LK    N+V R++ + E+YR L+    + K Q   ++  
Sbjct: 120 GIAAIESIHEQSDLISLVAQVLKSDGTNLVERIKTVQEKYRLLEKELQQLKDQQAAQESS 179

Query: 786 ---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
                   +  +  +   ++ V+ K L++++D L+K I
Sbjct: 180 SLGSQAKNVKGIKLLVRELNGVEPKMLRTMVDDLKKSI 217


>gi|210622878|ref|ZP_03293401.1| hypothetical protein CLOHIR_01349 [Clostridium hiranonis DSM 13275]
 gi|210153983|gb|EEA84989.1| hypothetical protein CLOHIR_01349 [Clostridium hiranonis DSM 13275]
          Length = 399

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/406 (23%), Positives = 171/406 (42%), Gaps = 43/406 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             ++V+      K  V  DQT F+   GGQ  D G   G    +++ D+ ++  G   H 
Sbjct: 15  DAKVVDVIEREGKYLVELDQTAFFPGGGGQFCDKGTLNG----IEVVDMLEE-NGKVYHI 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCI 612
                     E  +   ID+  R      H   H+L             G H+ ++ S +
Sbjct: 70  IEENLS----ENQVKGAIDWDRREDGMHQHFGQHVLSGCFFTKYNRNTCGFHLGEDISTV 125

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +G   D           L  +E   ND+I QN+ V   + ++++   +     L    
Sbjct: 126 DIEGEFTD---------EMLLEVEKMANDVIRQNIHVDIFVPSKDELEDTWTRRKLPDT- 175

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            + +R+V +     G   +  C G H   TGE+ LL I      R    R+E + G+RA 
Sbjct: 176 AEEIRIVRI-----GDLDTNACCGCHPEYTGELKLLKIKRTEKCR-NATRVEFLAGKRAV 229

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK-- 790
            +++ +D  + SL   L  ++ N+   V+ I  E +  ++IH K  L+  + D    +  
Sbjct: 230 DYVLKRDAVMTSLCKHLSCNEENIEKCVKNI--EEKCDEIIHQKNMLEDELLDYRIKELV 287

Query: 791 -----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                + D+  +  +  + DS+ L  ++  + +  +  ++ L  +S   + +V+   TED
Sbjct: 288 EKAELVDDIKLIKAVFKDKDSRYLNKMVKKITENEKMAVMFLNEVSN--RINVVFAYTED 345

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
           + D  +  D+ R +  ++ G GGG R + AQ GG N  K+D+ I  
Sbjct: 346 I-DGPSMSDILRSNISIIEGKGGGSR-YSAQGGGVNNGKSDEFIEK 389


>gi|212224908|ref|YP_002308144.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           onnurineus NA1]
 gi|212009865|gb|ACJ17247.1| alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           onnurineus NA1]
          Length = 404

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 154/385 (40%), Gaps = 34/385 (8%)

Query: 501 IVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +V+    G  V  +  D+T FY E GGQ  D G   G+G R+ +  V ++      H   
Sbjct: 18  VVQAVEQGNGVIRLALDRTIFYPEGGGQPSDRGVIEGNGFRVLVDRVYERDR--IWHEGK 75

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +E  +      + L +D+  R +   NH+  H+L   L  + G  +   G  I  D    
Sbjct: 76  LEGRLPEAGERVRLVLDWDWRYENMKNHTGQHILSAVLKNLYG--LDTTGFQIFDD--YN 131

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NREDAIASGAAALLGTKYNDRVRV 678
            +  +  +    +   E   N I+ + +PV      +  D IA      + +K  DRVR+
Sbjct: 132 KIEVNGELDWEMITRAEIEANSIVWEAIPVTVEEFKDLPDDIARTLRKHV-SKVTDRVRI 190

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +     G      CGGTHV +T EI L+ ++        + RIE + G RA  +L   
Sbjct: 191 VMI-----GDIDRTPCGGTHVRNTSEIGLIKVLRFYRKSKKLWRIEFVAGNRALKYLNKL 245

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIAD 793
                     +      +V RV+++  E  KL+      + +L     + L     +I  
Sbjct: 246 LADYWESLDEMPNKNRPLVERVKDLKAELDKLEEEKDNLRKELWEWKAKALLDRAEEIGG 305

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           V  +SHI    D K+ ++ +  L  K    I ++VG     K  V+     D ++  +  
Sbjct: 306 VRIVSHI-ESADMKDAQAFVVYLVDKNPGTIALVVG-----KNYVIFAKNRD-VEGISMN 358

Query: 854 DLARLSAKVLGG--------GGGGG 870
           +L +     +GG          GGG
Sbjct: 359 ELLKEVLAKVGGGGGGGEMLARGGG 383


>gi|297622597|ref|YP_003704031.1| Threonyl/alanyl tRNA synthetase SAD [Truepera radiovictrix DSM
           17093]
 gi|297163777|gb|ADI13488.1| Threonyl/alanyl tRNA synthetase SAD [Truepera radiovictrix DSM
           17093]
          Length = 397

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 25/386 (6%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V  + T FY  +GGQ  DTG   G      +TDV+ + + ++   A    G       +
Sbjct: 31  WVRLEDTLFYPTSGGQPHDTGTLGG----AAVTDVKLEGDAVWHLVA----GRPEVGARV 82

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D+  R +    HSA HLL  A   +  +        ++  G    +  +   ++ +
Sbjct: 83  EGALDWSRRYRHMQRHSAQHLLSQAFYRLAPA---FETRAVSLAGSVCTLDLAGAPSAED 139

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
               E    + +   L V T  ++  +            K   RVR+V +     G    
Sbjct: 140 AAQAETLALEAMYAALAVTTFEVDEGELSRYPLRR--PPKVTGRVRLVQM-----GDFEL 192

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           + CGGTHV  TGE + L ++    IR  + R+    G  A++    + + +  LA+    
Sbjct: 193 SACGGTHVRCTGEALPLKVLKLERIRGALTRVHFAAGWEAQADYGVKHQLVSDLAARFSA 252

Query: 752 SQGNVVGRVEEIWEEYRKLQLI-HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
              ++  RV  +      LQ    A R            + A    + + + E  +  L+
Sbjct: 253 RPSDLSARVGALQAALHDLQRDLEAARARLAAGLAAELGRSASGGVVCYALREDQADLLE 312

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            +   L ++   G+  L+   +E +A +L            A    R +   L  G GGG
Sbjct: 313 PLAGQLTER---GLTALLAAPREGRAQLLFARPAAGEGDLRAA--LRAALPYLR-GRGGG 366

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
            P  AQ  GP   +  +A+   +  L
Sbjct: 367 TPARAQGSGPETARVPEALEAASRAL 392


>gi|261408306|ref|YP_003244547.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. Y412MC10]
 gi|261284769|gb|ACX66740.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus sp. Y412MC10]
          Length = 394

 Score =  204 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 158/398 (39%), Gaps = 39/398 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  I  +        +V ++T FY   GGQ  D G       ++ + DV  + +G  +H 
Sbjct: 16  ETRITRKLEREDGTYLVLEETAFYPHGGGQPCDLGWI----DKIPVLDVV-QEDGEILHK 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L     +   +D+  R     +HS  HLL      +           +  D  
Sbjct: 71  IE----RLPEREEVTCRLDWDRRFDHMQHHSGQHLLSAMCLQVC--EAETLSFHLGQDYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+  S  +   +L  +E  VND I  N  V   +++RE A A     +   K  D +R
Sbjct: 125 TIDIARS-DLPQHQLMMLELEVNDQIYLNRQVTNYVVSREQAAA--LPLVKQPKVTDDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHVS+TGEI ++ ++     + G  R+    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVSATGEIGMIKLLRAEK-QKGHMRLYFKCGYRALKEFNA 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADV 794
             E L SL++    ++  ++ R+ +  +E ++LQ      K + +      L   +    
Sbjct: 236 GMEILGSLSARFNTAKEEILDRIAKWDQEQKQLQAELNAVKAENDAYLAGKLLAERQG-- 293

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             + H+ ++   K+++++   L ++ +  +I+L   + + K  +            +   
Sbjct: 294 RLVKHVFADKPMKDMQNLAAKLTEQAE--VIVLFASNSDHKVVL-------AQGGESGPA 344

Query: 855 LARLSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIA 890
                 + L    G GGG   +AQ+G    +  + A+A
Sbjct: 345 CGAFLKQHLADYRGKGGGSDKIAQAG---FSTVEDAMA 379


>gi|159901144|ref|YP_001547391.1| threonyl/alanyl tRNA synthetase SAD [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894183|gb|ABX07263.1| Threonyl/alanyl tRNA synthetase SAD [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 387

 Score =  204 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 151/402 (37%), Gaps = 35/402 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + V+  +  V  D++ FY E GGQ  D G   G    + + DVQ     +  H   
Sbjct: 15  EWSAQIVARDQQRVALDRSAFYPEGGGQPADHGWING----VAVVDVQADDHDLVWHTLA 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     S+   +D+Q R      H   HLL  A   +        G  ++ + +  
Sbjct: 71  APIDS----DSVECRLDWQRRFDHMQQHHGQHLLSAAFDQLFNWRTV--GFHLSSEYVTI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+   +  +  +L   E   N +I QNLP++ R ++ E+                 +RVV
Sbjct: 125 DLATGEADS-EQLGEAETLANQVIWQNLPILARFVSAEELATLALRK--APSVTGAIRVV 181

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           S      G    + CGGTH ++TG +  ++I         + RIE + G RA   L  ++
Sbjct: 182 S-----AGDFDHSACGGTHPNATGAVGQIHIRRSEKRGESV-RIEFVCGGRALQDLRWKN 235

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADV 794
             L  +A+   V+Q      +E + E+ +++     Q      + +         +I  +
Sbjct: 236 AALGRIAAGFSVAQPQAEQAIERLREQEQQVRKQFQQAEQQLLEFEAKALVEQAQRIGQL 295

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++ +    + + ++ + + + +   +G + L G++  K   +            +   
Sbjct: 296 KVVAQVWLR-EPQTVRQLANLVAQ---AGGVALFGVAASKPQLIFAG------QGLDCGA 345

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + R       GG GGG    AQ G    N    A+      +
Sbjct: 346 ILRQVVAAF-GGKGGGSVQQAQGGIAEANDLAAALELAKQQI 386


>gi|225874002|ref|YP_002755461.1| threonyl and Alanyl tRNA synthetase/DHHA1 domain protein
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794335|gb|ACO34425.1| threonyl and Alanyl tRNA synthetase/DHHA1 domain protein
           [Acidobacterium capsulatum ATCC 51196]
          Length = 422

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 158/378 (41%), Gaps = 30/378 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCA-----IGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +V  D++ FY  +GGQ  D G       +G+ + L +  V++  +G   H     +  L 
Sbjct: 37  QVALDRSAFYPTSGGQPFDLGLLRATSRLGNVLELPVVAVEEDEQGEVWHFV---QKPLI 93

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               +   +D+  R      HS  HLL    +  L +H       +  +    D+    P
Sbjct: 94  AGTQIEGLVDWPRRLDHMQQHSGQHLLSAVFAHELEAHT--LSFHLGEEVSTIDLDC-GP 150

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSVEY 683
           +  A L  IE   N+ IA N PV  R + R +A A    G    L  + +  +R++ +E 
Sbjct: 151 LDEATLVRIERIANEQIAGNRPVRVRQLPRSEAEAMLASGELRKLPER-DGELRIIEIE- 208

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                +    CGGTHV++TG+I  L I     +  G+ R+  + G RA          L 
Sbjct: 209 ----DYDRNACGGTHVNTTGQIGSLLIRGTEKVSRGV-RVSYVCGLRAVMAARQDAAILA 263

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-----ADVNFMS 798
           S A+ L V   +V   VE +  E +    ++ K + +L     +   +       + ++ 
Sbjct: 264 STAAQLSVGVPDVPASVERLRSEAKAAVKVNQKLREELAHYQATQIAVEVPIQNGLRWVD 323

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            ++++ D+  L+ +  +L   +   I +L   S E+  +V +V+   L    +  D+ + 
Sbjct: 324 RVMNDRDADYLRMLASSLAAAVPRTIALL---SCEQGQTVRLVLARSLDLDLHCGDVMKA 380

Query: 859 SAKVLGGGGGGGRPHMAQ 876
                 G  GGG P +AQ
Sbjct: 381 VLARF-GLRGGGSPGLAQ 397


>gi|183011980|gb|ACC37919.1| alanyl-tRNA synthetase [Themira leachi]
          Length = 173

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/175 (41%), Positives = 101/175 (57%), Gaps = 15/175 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLGTADPNSEMSKWVRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKR 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W ++ G+  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDAASGLEPDLECKQMWTEL-GVKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNRE 173


>gi|258616276|ref|ZP_05714046.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 147

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/147 (48%), Positives = 92/147 (62%), Gaps = 6/147 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + +R  FL+FFQ  GH + PS+SLIP NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  K    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPKWMAF 120

Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLS 147
           D  +LY+TVY +D EA ++W +  GL 
Sbjct: 121 DPEKLYVTVYPKDTEAKRIWHEEVGLP 147


>gi|41615006|ref|NP_963504.1| hypothetical protein NEQ211 [Nanoarchaeum equitans Kin4-M]
 gi|40068730|gb|AAR39065.1| NEQ211 [Nanoarchaeum equitans Kin4-M]
          Length = 499

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 100/506 (19%), Positives = 207/506 (40%), Gaps = 29/506 (5%)

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDI 404
            I E +  E +++ +T  +   L++     +    +     V F+LY + G+  D++ D 
Sbjct: 3   PINEIILEEYKKYKQTEKQFKPLIEKTREKIKNLSDEEKAKVLFELYISKGITPDLIVDH 62

Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464
           +  +         F + LE+ R +++A             +   +  +    F+ +    
Sbjct: 63  IPEK---------FYELLEKHRQKSKAEKHKKEIDIDVSKYKPTEFLFWKDTFLKF-CEA 112

Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524
               +++D  +  +        G       I+ +  +V    +GQ  +      PFY + 
Sbjct: 113 NLLGIEKDYAIFDKTVFYPTMGGQEHDTGYIIDRDSLVYLYKTGQYSK---YNIPFYKDV 169

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
                D      + + +++ DV KK  G  + H + +   L+   + VL ID+  R QLS
Sbjct: 170 YEYYKDYQYKKEEIVFVRVIDVIKK--GKVILHKVDDIEKLKKIENPVLLIDFDRRLQLS 227

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            NH+A H++      + G H+ Q G+    +    D+TH K ++  EL+ +E   N I+ 
Sbjct: 228 RNHTAVHIITGIARKLFGEHIWQAGAEKKYEYATIDLTHYKNLSDEELELLEKEANKIVM 287

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  P+    + + +A       +          +  VE ED  V     C GTH+ +T +
Sbjct: 288 EMRPIKKYFLPKNEAEKRFGFRIYQGGVVPEKILRIVEIEDLDV---EACSGTHLDNTIQ 344

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +  + I++   I     RI   TG +A   ++ +D+ LK ++   K    N    V++ +
Sbjct: 345 VGYIKILASKKISDNTIRIYLTTGNQAVKEIIKRDKILKEISKITKTDIDNTPIAVKKFF 404

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           + ++ ++     +K    ++D        +N   +II   DS EL  ++  ++K I    
Sbjct: 405 DNWKAME-----KKYDSLLKDYFRLIQEKINNGEYIIKVSDSLELSDLIKLIKKLIDLDC 459

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRF 850
           ++L       K   + V  +D +++ 
Sbjct: 460 VVLY-----NKNYAVGVKCKDQIEKL 480


>gi|329922834|ref|ZP_08278350.1| threonine/alanine tRNA ligase second additional domain protein
           [Paenibacillus sp. HGF5]
 gi|328941607|gb|EGG37892.1| threonine/alanine tRNA ligase second additional domain protein
           [Paenibacillus sp. HGF5]
          Length = 394

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 158/398 (39%), Gaps = 39/398 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  I  +        +V ++T FY   GGQ  D G       ++ + DV  + +G  +H 
Sbjct: 16  ETRITRKLEREDGTYLVLEETAFYPHGGGQPCDLGWI----DKIPVLDVV-QEDGEILHK 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L     +   +D+  R     +HS  HLL      +           +  D  
Sbjct: 71  IE----RLPEREEVTCRLDWDRRFDHMQHHSGQHLLSAMCLQVC--EAETLSFHLGQDYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+  S  +   +L  +E  VND I  N  V   +++RE A A     +   K  D +R
Sbjct: 125 TIDIARS-DLPQHQLMMLELEVNDQIYLNRQVTNYVVSREQAAA--LPLVKQPKVTDDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHVS+TGEI ++ ++     + G  R+    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVSATGEIGMIKLLRAEK-QKGQMRLYFKCGYRALKEFNA 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADV 794
             E L SL++    ++  ++ R+ +  +E ++LQ      K + +      L   +    
Sbjct: 236 GMEILGSLSARFNTAKEEILDRIAKWDQEQKQLQAELNAVKAENDAYLAGKLLAERQG-- 293

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             + H+ ++   K+++++   L ++ +  +I+L   + + K  +            +   
Sbjct: 294 RLVKHVFADKPMKDMQNLAAKLTEQAE--VIVLFASNADHKVVL-------AQGGESGPA 344

Query: 855 LARLSAKVLGG--GGGGGRPHMAQSGGPNGNKADQAIA 890
                 + L    G GGG   +AQ+G    +  + A+A
Sbjct: 345 CGAFFKQHLADYRGKGGGSDKIAQAG---FSTVEDAMA 379


>gi|183011924|gb|ACC37891.1| alanyl-tRNA synthetase [Lasionemopoda hirsuta]
          Length = 170

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/172 (43%), Positives = 97/172 (56%), Gaps = 15/172 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTXL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIW 170


>gi|183011982|gb|ACC37920.1| alanyl-tRNA synthetase [Themira lucida]
 gi|183011988|gb|ACC37923.1| alanyl-tRNA synthetase [Themira pusilla]
          Length = 172

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 100/168 (59%), Gaps = 10/168 (5%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ 
Sbjct: 5   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEF 64

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M E
Sbjct: 65  LTERLCLPKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGE 123

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 124 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREAD 170


>gi|153814088|ref|ZP_01966756.1| hypothetical protein RUMTOR_00297 [Ruminococcus torques ATCC 27756]
 gi|317499897|ref|ZP_07958133.1| hypothetical protein HMPREF1026_00075 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087880|ref|ZP_08336805.1| hypothetical protein HMPREF1025_00388 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848484|gb|EDK25402.1| hypothetical protein RUMTOR_00297 [Ruminococcus torques ATCC 27756]
 gi|316898614|gb|EFV20649.1| hypothetical protein HMPREF1026_00075 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409575|gb|EGG89016.1| hypothetical protein HMPREF1025_00388 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 419

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 156/385 (40%), Gaps = 39/385 (10%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCA-----------IGDGIRLQITDVQKKAEGIF 554
            +G+  E+  D+T F+ E GGQ  DTG                  ++Q+ DV+++   IF
Sbjct: 40  KAGEYYEIELDRTAFFPEGGGQYADTGVLYMADDDTCGLDETARKKVQVLDVRERNGRIF 99

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                +  G +  + ++  +ID++ R      H+  H++   +    G   +  G  +  
Sbjct: 100 H----ITDGFIEAKTAVKGSIDWEERFMKMQQHTGEHIVSGLIHAAYGY--NNVGFHLGS 153

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           +    D      IT  EL+ IE   N  + +NL V T    +E+       + +  +   
Sbjct: 154 EDCTMDF--DGEITEEELRRIEAEANKAVWKNLKVFTHYPKKEELSQIEYRSKI--EIEG 209

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           +VR++ +       +    C   HV+ TGEI L+ +V     + G+ RI  + G RA S 
Sbjct: 210 QVRIIEIPG-----YDCCACCAPHVTYTGEIGLIKLVQAQRYKGGV-RITMLCGVRAFSD 263

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIA 792
            + ++ + K ++  L   +  +   V  + EE  +L  +L   +R+L     D+      
Sbjct: 264 YVRKEAQAKEISRLLCAKENEIADAVAHLAEETNQLKYELAEKERRLVKAYADMISESKD 323

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            V   +    E     ++ +M+ +         +  G  K+    VL    +D+      
Sbjct: 324 AVCIFT---EEFGGDSMRMLMNYVLDAGHCICAVFFGNEKDGYRYVLGSRQQDVR----- 375

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQS 877
            ++A+   K    G GGG+P M Q 
Sbjct: 376 -EMAKEFNKRF-DGRGGGKPEMVQG 398


>gi|183011976|gb|ACC37917.1| alanyl-tRNA synthetase [Themira biloba]
          Length = 167

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 99/168 (58%), Gaps = 10/168 (5%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ 
Sbjct: 2   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEF 61

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +  DE        E  ++W ++ GL  + I+     DNFW M E
Sbjct: 62  LTERLCLPKDRLYVTYFGGDEASGLEPDLECKQIWTEL-GLKPEHILPGNMKDNFWEMGE 120

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           TGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++  
Sbjct: 121 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREAD 167


>gi|197303753|ref|ZP_03168790.1| hypothetical protein RUMLAC_02483 [Ruminococcus lactaris ATCC
           29176]
 gi|197297273|gb|EDY31836.1| hypothetical protein RUMLAC_02483 [Ruminococcus lactaris ATCC
           29176]
          Length = 397

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 148/375 (39%), Gaps = 34/375 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                 E+V DQT F+ E GGQ  DTG         ++ DVQ++ EG  +H        L
Sbjct: 34  KKENYYEIVLDQTAFFPEGGGQYADTGYL----GDAKVLDVQEQ-EGQILHR---TDQEL 85

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D++ R      H+  H++   +    G      G  +  +    D   S 
Sbjct: 86  PVGEKVTGQLDWELRFMKMQQHTGEHIVSGIVHERYGY--ENVGFHLGNEDCTMDF--SG 141

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            I   +L+ IE   N  + +NL +     ++E+       + +  +   +VRVV V    
Sbjct: 142 EIPVEDLQEIEFRANQAVWENLKIQILYPSKEEEKEMTYRSKI--EITGQVRVVIVPG-- 197

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
              + +  C   HV  TGEI L+ +V     + G+ R+  + G RA +    + ++ K +
Sbjct: 198 ---YDACACCAPHVDFTGEIGLIKLVGMQRYKGGV-RVTMLCGGRAMADYALKQKQAKEI 253

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHKIADVNFMSHIIS 802
           ++ L   +  +   V  + +E  + +   A+++ +L     E +   +      +     
Sbjct: 254 SAMLCAKENELTDAVAHLQKELAEKKTELAEKEQELIRCKAEQIPESE----QIVCIFPE 309

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            +    L+ +M+A+ +K +    +  G        V+     D+       ++A+     
Sbjct: 310 GIQGDSLRILMNAVLEKNRKLCAVFSGNDAAGYRYVIGSRDVDVR------NMAKELNAA 363

Query: 863 LGGGGGGGRPHMAQS 877
              G GGGRP M Q 
Sbjct: 364 FE-GRGGGRPEMVQG 377


>gi|18976557|ref|NP_577914.1| partial alanyl-tRNA synthetase matches COOH terminus half
           [Pyrococcus furiosus DSM 3638]
 gi|18892116|gb|AAL80309.1| partial alanyl-tRNA synthetase matches COOH terminus half
           [Pyrococcus furiosus DSM 3638]
          Length = 404

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/410 (22%), Positives = 164/410 (40%), Gaps = 34/410 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            +IV+    G  V+V  D+T FY E GGQ GD G   G+G  + + +  +K EG   H  
Sbjct: 16  AKIVDLKFEGDNVKVELDRTIFYPEGGGQPGDKGVIKGEGFEIIVENTIEK-EGRIFHIG 74

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +         S+ L +D+  R      H+  H+L   L  +   ++   G  I  +  +
Sbjct: 75  KLIGKTPNKGDSVELELDWDWRYGNMQIHTGQHILSAVLKKMY--NLDTTGFTIFGEYAK 132

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            +V  +  IT   ++  E   N II  +LPV+    +      +        K   ++R+
Sbjct: 133 IEV--NGEITWDIIERAELEANKIIISDLPVIIEEYHELPEELASELRKSVAKVKGKIRI 190

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM-G 737
           V +     G      CGGTHV ST E+ ++ ++        + RIE   G RA   +   
Sbjct: 191 VKI-----GDVDITPCGGTHVRSTKEVGIIKVLRFYKKSRDLWRIEFTCGFRAIREINII 245

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIA 792
             + L SL   +      +V RV+E+ +    L+    + + ++             KI 
Sbjct: 246 LQDYLNSL-ELMSNKNPPLVKRVKELLDTTNSLEEKIEELRREIWEWKGKALIEKATKIG 304

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
           D   +++ +   D K+ ++      K+    I++L          V+    E++    + 
Sbjct: 305 DYLVVTY-VESWDMKDAQAFAVDFVKRNPKTILLLASEK-----YVVFARNENVP--VSM 356

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ-----AIAGVASFLK 897
            +L R  A  L GG GGG  ++A+      +   +     A+  V   L+
Sbjct: 357 RELFRKVASEL-GGKGGGTDNLARG---KVDAKPETILSVALEKVKETLQ 402


>gi|183011958|gb|ACC37908.1| alanyl-tRNA synthetase [Sepsis indica]
          Length = 167

 Score =  202 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 99/168 (58%), Gaps = 10/168 (5%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 2   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEF 61

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +  DE        E  ++W  + GL  + I+     DNFW M E
Sbjct: 62  LTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGE 120

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 121 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREAD 167


>gi|183011990|gb|ACC37924.1| alanyl-tRNA synthetase [Themira putris]
          Length = 173

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 98/168 (58%), Gaps = 10/168 (5%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S G YFK      AW+ 
Sbjct: 6   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSXGDYFKREICTWAWEF 65

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +  DE        E  ++W ++ GL  + I+     DNFW M E
Sbjct: 66  LTERLCLPKDRLYVTYFGGDEASGLEPDLECKQIWTEL-GLKPEHILPGNMKDNFWEMGE 124

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           TGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++  
Sbjct: 125 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREAD 171


>gi|183011940|gb|ACC37899.1| alanyl-tRNA synthetase [Platytoxopoda sp. RM-2008]
          Length = 170

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 100/172 (58%), Gaps = 15/172 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQY 170


>gi|183011910|gb|ACC37884.1| alanyl-tRNA synthetase [Dicranosepsis distincta]
          Length = 173

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 75/172 (43%), Positives = 97/172 (56%), Gaps = 15/172 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPIFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIW 173


>gi|299561736|gb|ADJ36940.1| alanyl-tRNA synthetase [Dalmannia vitiosa]
          Length = 183

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/185 (41%), Positives = 101/185 (54%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F     P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLETVDPNSEMFKLVRVVNTQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGDYFKL 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
              + AW+ L    +L +  LY+T +  DE        E  ++W  I GL    I+  + 
Sbjct: 61  EICKWAWEFLIDSLELPKDNLYVTYFGGDEKSGLDPDLECKQIWLNI-GLDVSHIVPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M + GPCGPCSEI FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGDIGPCGPCSEIHFDRIGG-RSVPELVNKDDPDVLEIWNLVFIQFNREKDGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 RPLPK 183


>gi|134300172|ref|YP_001113668.1| phage tail protein I [Desulfotomaculum reducens MI-1]
 gi|134052872|gb|ABO50843.1| phage tail protein I [Desulfotomaculum reducens MI-1]
          Length = 404

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/399 (23%), Positives = 160/399 (40%), Gaps = 31/399 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVER 562
                K  ++F++T FY E GGQ  D G  + D  R   ++  V+++ EGI    A   +
Sbjct: 22  IEDQDKTGILFEETIFYPEGGGQPSDRGTLVCDARRTSHEVLHVEQRPEGIVHWIAGSLK 81

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             +    S++LT+D + R+     H   H+L        G      G  + P+    D+T
Sbjct: 82  PTI--GASVLLTVDAERRQDHMQQHHGQHILSAVFERNYGWDTV--GFHLGPETSTIDLT 137

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               I+   L+ +E  VN II +N+PV T    RED +       L +  N+   VV   
Sbjct: 138 V-GDISQDVLQEVELEVNRIIMENIPVKTEYYKRED-LGQELIKKLPSDQNEVRLVVIPG 195

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
            ++        C GTH   TGE+    I+    +R  I R+  I G+R  + +    + L
Sbjct: 196 IDEN------ACCGTHPQRTGEVGPCKILKIEKLRGNI-RLSFICGERTIAWMRQTADTL 248

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKI--ADVNFM 797
             L   +  S    + R+E+   E +KLQ    +    K +   ++L+   I   + + +
Sbjct: 249 HQLEKAIGASGNEALIRLEKREVELKKLQKERKELLSLKYRYLAKELATEAISSGETSIL 308

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
               SE D + L+ V  +   +     +++ G        V++     +    N+V  A 
Sbjct: 309 IQHFSEADMEMLRGVATSWCAQSGRVAVLMGGT---GPFDVVMARGSGVATSMNSV--AA 363

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               VL  G GGG   + Q       K    +  +   +
Sbjct: 364 ELWPVLE-GKGGGSAELVQG---KAQKLP--VEQLKEMV 396


>gi|299542048|ref|ZP_07052367.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298725471|gb|EFI66116.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 391

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 150/387 (38%), Gaps = 23/387 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  VV   T FY   GGQ  DTG        L++ DV+K  + I  +   +E  +   +
Sbjct: 28  DRHYVVLSNTAFYPTGGGQPHDTGTLNA----LKVIDVEKVNDEIRHY---IEGDLSTLD 80

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +++  R      H+  H+L  A   +  +        +  + +  D+   + I+
Sbjct: 81  GVVHGKLNWSRRFDHMQQHAGQHILTAAFVELFNAQTVS--FHLGSEQVTIDLAI-ETIS 137

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +L + E   NDII +N P+ T  +  ++         +     D   V+   ++  G 
Sbjct: 138 EQQLAAAEARANDIILENRPIQTTWVTEQELGNYNLRKEVAVT-GDIRLVIIPNFDYNG- 195

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                CGGTH +STG++  + I+    ++  + R+  + GQR  + L  + + L  +A  
Sbjct: 196 -----CGGTHPTSTGQVSTIKILGTEKMKGNV-RVSFVCGQRVLTELGMRKKILADVARQ 249

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           L V +      + ++    +  +   A  K +L   +     +     ++   ++   +E
Sbjct: 250 LSVPEVEAATALSKVLSTQKTTEKALAAAKEELLTYEARA-LVNSEGVVTAAFNQRTMQE 308

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           L+ +   +  + Q  +I L+    E K   +     ++             A  L  G G
Sbjct: 309 LQKIARLIVTE-QKDVIALLVSENEGKLQFVAARGNNVSKSMK---DVAQKALPLINGKG 364

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASF 895
           GG   M Q GG      ++ +A +   
Sbjct: 365 GGSDQMVQGGGDCTVSKEELLAAMQDV 391


>gi|183011880|gb|ACC37869.1| alanyl-tRNA synthetase [Lopa convexa]
          Length = 173

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 99/169 (58%), Gaps = 10/169 (5%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   Y  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 7   EMSKYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCAWAWEF 66

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT    L + RLY+T +  DE        E  ++W ++ GL  + II     DNFW M E
Sbjct: 67  LTVRMKLPKERLYVTYFGGDESGGLDADIECRQIWLQL-GLQPEHIIPGNIKDNFWEMGE 125

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
           TGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++   
Sbjct: 126 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREQNG 173


>gi|260588008|ref|ZP_05853921.1| putative alanyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|331082422|ref|ZP_08331548.1| hypothetical protein HMPREF0992_00472 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541535|gb|EEX22104.1| putative alanyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|330400908|gb|EGG80509.1| hypothetical protein HMPREF0992_00472 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 392

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/409 (21%), Positives = 169/409 (41%), Gaps = 39/409 (9%)

Query: 495 IVQQGEIV--EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
            ++  E V      +G   E V D+T F+ E GGQ  DTG    +   +Q+ DVQ++  G
Sbjct: 11  YIKDFEAVVLSCIPNGNHFEAVLDRTAFFPEGGGQCADTGVLHIENREIQVFDVQER-NG 69

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             +H    E   +    +++  +D+Q R      H+  H++   +    G      G  +
Sbjct: 70  EIIHFIDKE---ILPGQTVIGELDFQERFSKMQQHTGEHIISGIVHRRFGY--ENVGFHL 124

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             + +  D  +  P+T  EL+SIE   N ++A+N  +       E+       +    + 
Sbjct: 125 GKEEVTMD--YDGPLTPEELRSIEYEANQVVAENREIRAYFPGTEELEKIPYRS--KKEL 180

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
             ++R+V ++  D        C   HV +TG + L+ I +    + G+ R+    G RA 
Sbjct: 181 QGKIRIVEIQDCD-----ICACCAPHVKTTGNVGLIKITNAIRYKGGM-RLWITCGMRAL 234

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                ++  +  +++ L   Q  V   V+ + EE ++L+   AK + +L +  L   K+ 
Sbjct: 235 EDYNQKEASVVQISNMLSAKQQEVTDAVKRLTEEIQQLKEKAAKMQERLVMGYLESEKVV 294

Query: 793 -----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE--D 845
                + N +     E+D+  +++ ++A  +  +      VG  K+    VL    +  +
Sbjct: 295 LKENPNANLL-LFEKELDAMAMRNFVNAGMELTKGVCGAFVGDEKQGFRYVLGSSGDIRE 353

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG--GPNGNKADQAIAGV 892
           +  + NA             G GGG+P M Q    G    K  + +  V
Sbjct: 354 IGKKLNAA----------FQGKGGGKPPMIQGSLVGEE-EKIREFLEKV 391


>gi|183011922|gb|ACC37890.1| alanyl-tRNA synthetase [Dicranosepsis unipilosa]
          Length = 170

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 100/172 (58%), Gaps = 15/172 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQF 208
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQY 170


>gi|14591706|ref|NP_143794.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570355|sp|O57734|ALAXL_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-L; Short=AlaX-L;
           AltName: Full=Alanyl-tRNA deacylase AlaX-L
 gi|3258413|dbj|BAA31096.1| 404aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 404

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 158/406 (38%), Gaps = 24/406 (5%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             +IV+      +VEVV D+T FY E GGQ GD G   G+   + + D  +K  G   H 
Sbjct: 16  DAKIVDVRKEKDRVEVVLDRTIFYPEGGGQPGDRGVIKGNDFEIMVEDTIEK-NGEIFHI 74

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +   I +    + L +D++ R      H+  H+L   L  +    +   G  I  D  
Sbjct: 75  GKLRGEIPKEGEKVKLYLDWEWRYGNMQMHTGQHILSAVLKKLY--DLDTTGFNIFRDYA 132

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + +V  +  +    ++  E  VN II  +LPVV    ++     +       TK  +++R
Sbjct: 133 KIEV--NGEVNWDMIERAELEVNKIIINDLPVVIEEYDKLPEEIALKLRKNVTKVKEKIR 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +     G      CGGTHV ST E+ ++ ++        + RIE   G RA S +  
Sbjct: 191 IVKI-----GDVDVTPCGGTHVKSTREVGIIKVLRFYKKSKNLWRIEFTCGYRAISKMNE 245

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF- 796
                      +      ++ R+ E+      L+    + + ++            V   
Sbjct: 246 ILRDYWGSLDLMPNKNPPLIERINEVLRTVNSLENRIEELRREIWEWKGKALLKEGVKVG 305

Query: 797 ---MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
              +   +   + K+ ++      KK  + I++L     EK         ++     +  
Sbjct: 306 NYTVITHVENWNMKDAQAFAIDFVKKNSNTILLLA---NEKYVLF----AKNEGVPVSMR 358

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGP-NGNKA-DQAIAGVASFLK 897
           +L +     L GG GGG  ++A+        +  D A+  + S L+
Sbjct: 359 ELLKEVIDEL-GGKGGGTDNLARGRVEAKPEEIFDVALEKLRSHLQ 403


>gi|183011904|gb|ACC37881.1| alanyl-tRNA synthetase [Dicranosepsis cf. parva RM-2008]
          Length = 173

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 74/172 (43%), Positives = 96/172 (55%), Gaps = 15/172 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPXFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIW 173


>gi|226229209|ref|YP_002763315.1| putative alanyl-transfer RNA synthetase [Gemmatimonas aurantiaca
           T-27]
 gi|226092400|dbj|BAH40845.1| putative alanyl-transfer RNA synthetase [Gemmatimonas aurantiaca
           T-27]
          Length = 410

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/398 (23%), Positives = 153/398 (38%), Gaps = 31/398 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V+G    V  D++ FY  +GGQ  D G    D   + + D  ++       H + E   L
Sbjct: 35  VAGDGRIVYLDRSAFYPTSGGQPHDLGWL-ADISVVDVVDEDERVA-----HHLAEPLGL 88

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +V  +D   R      H+  HLL   ++   G       S    D        + 
Sbjct: 89  PIGAMVVGLVDMARRFDHMQQHTGQHLLSALMADRYGWPTV---SVHFGDITSTVDVAAA 145

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T A+L  IE   N +   NL V     + E A     A+      +  +R+V+++  D
Sbjct: 146 EVTPAQLIEIEQRANALALDNLEVSVSYEDAETASGLRKAS----DRSGTLRIVTIDGLD 201

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTHV+ T EI  + +      R G  RIE + G RA        + L   
Sbjct: 202 RS-----ACGGTHVARTAEIGAVLLRRAERTR-GHTRIEFVCGHRAVQRARLDADLLTRA 255

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADVNFMSHIIS 802
           A  L  +  +V   VE++ +  + L+    +        +        I D N +  +  
Sbjct: 256 ARPLSAAPHDVPALVEQMQQRLQDLERELKRTTLALAAHDALAHWNAAIPDANGVRRVRL 315

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            V+     S   A Q   + G ++LV  +      VL+   +D+    +A    R + + 
Sbjct: 316 TVNGAVKDSEALAQQLTARGGCVVLVTSATVGG--VLLATADDVS--IDAGQQLRAALQS 371

Query: 863 LGGGGGGGRPHMAQS---GGPNGNK-ADQAIAGVASFL 896
           + GG GGG P +AQ    GG +GN    + +  VA  L
Sbjct: 372 V-GGRGGGSPRVAQGAVPGGSDGNAHLRETLDAVARML 408


>gi|15805529|ref|NP_294225.1| alanyl-tRNA synthetase-like protein [Deinococcus radiodurans R1]
 gi|6458192|gb|AAF10082.1|AE001909_4 alanyl-tRNA synthetase-related protein [Deinococcus radiodurans R1]
          Length = 409

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 146/393 (37%), Gaps = 19/393 (4%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                V  Q  EV    T FY E+GGQ  D G     G   ++T  +K      V H  V
Sbjct: 34  FAASVVDVQGQEVALAATAFYPESGGQSSDVGLLRWPGSEARVTHARKDKATGTVWH-RV 92

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +  +      +   +D   R + +  HSA HLL  A   +  +      + +   G    
Sbjct: 93  DGELPPVGAEVTGEVDPGPRWRHTQRHSAEHLLAQAFRRVNPA---FEVASVNMTGPECT 149

Query: 621 VTHSKPITSAELKSIEDNVND-IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +        A++++ E  + + +    L + T I+   + +         +K   +VR+V
Sbjct: 150 IDFLGDPGEADIRAAEALLRETLGRDELTLETPIVPEAELVNYPLRR--ESKVGGQVRLV 207

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                DG     + CGGTHV        + I+    +R G  R+  + G+ A  +L G  
Sbjct: 208 MFRGSDGDFFDVSACGGTHVPGAAMCAPVVILRTERVRGGQVRVVFMAGEEASEYLSGVY 267

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           +  ++LA         +  RV  +  +    +      + +L  + ++         +  
Sbjct: 268 QSARTLAQEFSAPVDKLPERVAALRADLSAARADADALRARLAAQLVAAASAEGTPPLRL 327

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
           +  + ++  L  V+ A+         +L  +    +  V     +       A D+ R +
Sbjct: 328 LTLD-NAALLAPVLTAVPAGE-----VLAAVGPGGRCGVASAHPD-----VKAGDVLR-A 375

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           A  + GG GGG+P +AQ    +     +A+  V
Sbjct: 376 ALAVTGGKGGGKPDLAQGSTADEGGFLEAVRQV 408


>gi|183011978|gb|ACC37918.1| alanyl-tRNA synthetase [Themira flavicoxa]
          Length = 169

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 10/167 (5%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ 
Sbjct: 5   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEF 64

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M E
Sbjct: 65  LTERLCLPKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGE 123

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN 212
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++ 
Sbjct: 124 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREA 169


>gi|330998666|ref|ZP_08322396.1| threonine/alanine tRNA ligase second additional domain protein
           [Parasutterella excrementihominis YIT 11859]
 gi|329576527|gb|EGG58035.1| threonine/alanine tRNA ligase second additional domain protein
           [Parasutterella excrementihominis YIT 11859]
          Length = 388

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 147/396 (37%), Gaps = 36/396 (9%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V     G+K  EVV D T FY E GGQ  D G   G+   + +    K+     VH+   
Sbjct: 21  VTSCREGKKGFEVVLDDTAFYPEGGGQPSDEGTL-GEAKVIFV----KRVGPEIVHYI-- 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    +++  ID++ R     NH+  H+    +       +   G  + PD +  D
Sbjct: 74  -DKPLEVGSTVIGKIDWERRFDNMQNHTCEHIFSGLVHQKY--KLENVGFHMDPDDITVD 130

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
              S  I    +  +E  VN  I Q++ +       E   A    +    + +  VR+V+
Sbjct: 131 F--SGEIPMESIPELEQLVNQAITQDIDLKIEFPTEEALEAMEYRS--KKELHGVVRIVT 186

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D        C GTHV  +GEI +  I+  S  R G  R+  + G+RAR     + +
Sbjct: 187 IPGCD-----RCACCGTHVRRSGEIGMFKILDASKHRGG-TRVRFVAGERARRDYGWRVK 240

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKIADVNFM 797
           ++  +++        +        EE +      A+R    LQ     L          +
Sbjct: 241 EIAKVSALFSAKPHEIAKAAANFIEEGKAKDQKSAQRTERYLQFVASGLVSRN----GLV 296

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
                ++   ELK     L++K     I +    +     V+     +L     +++   
Sbjct: 297 KVFEEDLSPFELKRFAGMLKEKFPESSIGVFSPIEGGFNYVIASSDPELPKFSKSLN--- 353

Query: 858 LSAKVLGGGGGGGRPHMAQSGGP-NGNKADQAIAGV 892
             AK+   G GGGR  M Q     +    ++A   +
Sbjct: 354 --AKL--NGRGGGRDGMVQGTYRVDKEAVEEAFDEI 385


>gi|116620597|ref|YP_822753.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223759|gb|ABJ82468.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
          Length = 386

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 91/403 (22%), Positives = 155/403 (38%), Gaps = 40/403 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           Q  IV+ +  GQ V    D++ FY  +GGQ  D G   G    + + +V  + + I    
Sbjct: 16  QARIVDRSPDGQTVY--LDRSAFYPTSGGQPFDLGSIAG----IAVVEVVDEDDRIAHRL 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-----SHVSQNGSCI 612
           A      L T   +   ID+  R      HS  HL+      + G      H+    + I
Sbjct: 70  AA----PLTTGEEVTARIDWARRFDHMQQHSGQHLISAVFEELFGLRTVSFHLGAESATI 125

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +G         P+    L   E   N +I +N P+  R  + ++A     A+    + 
Sbjct: 126 DLEG--------GPVDPGTLPRAELRANQLIYENRPLDVRFEDAKEAQGLRKAS----ER 173

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              +R+VS+E  D        CGGTHV +TGEI ++ +     IR    R+E + G RA 
Sbjct: 174 EGMLRIVSIEGLDRS-----ACGGTHVRATGEIGVILLRKVEKIRQAA-RVEFVCGGRAV 227

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---EDLSCH 789
                  E L  ++     +   V G V    E  +  +    K +L+L     +DL   
Sbjct: 228 KRARADFEALTKVSQVFSAALDEVPGMVAAQVEAAKAGEKARRKVELELAAYQGKDLYQA 287

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
                + M  +   ++   L+ +    Q      + + +   ++   SVL+  + D    
Sbjct: 288 TAPGPDGMRRVTQRLERGNLEDLRAVAQNFTAQPMAVFLATLQD-PPSVLLAASAD--SG 344

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +A  + + +A     G GGG   +AQ   P+     + +  V
Sbjct: 345 VDAGKVLK-AALTAASGRGGGNARIAQGSVPDAGALQKVVQAV 386


>gi|257440072|ref|ZP_05615827.1| putative DHHA1 domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257197424|gb|EEU95708.1| putative DHHA1 domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 394

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 147/389 (37%), Gaps = 30/389 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             +  D T FY E GGQ  D G   + DG  L +TDV ++A G+  H             
Sbjct: 33  GRIALDGTVFYPEGGGQPADRGTLTLADGTVLTVTDVHEQA-GVIWHMVTSLPAGAVPGA 91

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
                ID+  R      H+  H+L   L ++ G+     G  I  D +R D     PI++
Sbjct: 92  EAAQAIDWAWRFDKMQQHTGEHILSGILHSMFGA--ENVGFHIGSDAVRMDTNI--PISA 147

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             LK+ E   N II +N+PV      RE+       +    +   +VR+V++   D    
Sbjct: 148 EGLKAAETAANRIIWENVPVNITYPTREELAILTYRS--KKEIEGQVRIVTIPGAD---- 201

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               C GTH + TG +  + I++  + + G+ R+  + G RA         +   + + L
Sbjct: 202 -VCACCGTHTAFTGAVGQIKILAAENYKGGV-RLSIVCGGRALEAAQAMRARQAEIGALL 259

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
                     V  +++EY  L+  H     QL   D    ++        I+  +D   L
Sbjct: 260 SAKASETANAVHRVYDEYTALKFTHFGLCSQLF--DALAAQVTPGADAIRIVPGLDPDGL 317

Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             +   L +        L   +++     L     D+     A++ A         G GG
Sbjct: 318 HRLAVRLTEATTGLCAAL-TPNEKGTGYCLAQAGGDVRALTKALNAA-------LNGRGG 369

Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G+P + Q          +    V  FL+K
Sbjct: 370 GKPGICQGS---CAAEPE---QVKEFLRK 392


>gi|299561770|gb|ADJ36957.1| alanyl-tRNA synthetase [Strongylophthalmyia angustipennis]
 gi|299561772|gb|ADJ36958.1| alanyl-tRNA synthetase [Toxomerus marginatus]
          Length = 171

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/173 (42%), Positives = 98/173 (56%), Gaps = 15/173 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +      QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSDMAKWVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L   RLY+T +  DE        E  ++W  + GL  + ++  + 
Sbjct: 61  EICTWAWEFLTERMKLPADRLYVTYFGGDEKSGLAPDSECRQIWLDL-GLKPEHVLPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE 209
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ 
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYN 171


>gi|299561768|gb|ADJ36956.1| alanyl-tRNA synthetase [Rachispoda sp. JFG-2010]
          Length = 174

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 77/175 (44%), Positives = 102/175 (58%), Gaps = 15/175 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  + W  + GL A+ +I  + 
Sbjct: 61  EICTWAWEFLTERLHLPKDRLYVTYFGGDAASGLEPDLECKQYWLDL-GLLAEHVIPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+QF ++
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQFNRE 173


>gi|183011936|gb|ACC37897.1| alanyl-tRNA synthetase [Palaeosepsis pusio]
          Length = 162

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 10/164 (6%)

Query: 66  KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125
           KC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L + RL
Sbjct: 1   KCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGLPKDRL 60

Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177
           Y+T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPCSE+ F
Sbjct: 61  YVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPCSELHF 119

Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           D+           + +    +EIWNLVF+Q+ ++      +LPK
Sbjct: 120 DRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREQDSSLKLLPK 162


>gi|183011974|gb|ACC37916.1| alanyl-tRNA synthetase [Themira arctica]
          Length = 166

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 99/165 (60%), Gaps = 10/165 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ LT+
Sbjct: 3   KWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEFLTE 62

Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M ETGP
Sbjct: 63  RLCLPKDRLYVTYFGGDVASGLEPDLECKQMWTEL-GLKPEHILPGSMKDNFWEMGETGP 121

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK 213
           CGPCSE+ FD+           + +    +EIWNLVF+Q+ ++  
Sbjct: 122 CGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREAD 165


>gi|148645076|gb|ABR01062.1| AlaS [uncultured Geobacter sp.]
          Length = 140

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/140 (56%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 73  KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE 132
           KHNDL+ VGRT RHHTFFEMLGNFSFG YFK +AI  AW+ LT E  L + RLY+TVY +
Sbjct: 1   KHNDLEKVGRTARHHTFFEMLGNFSFGDYFKTQAIAFAWEFLTVELGLSKDRLYVTVYQD 60

Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS- 191
           D+EA  +W +  G+  ++I R    DNFWSM +TGPCGPC+EIF+D G     G P  + 
Sbjct: 61  DDEAAAIWHEQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCGSPDCAV 120

Query: 192 -EEGERYIEIWNLVFMQFEQ 210
             + +RY+EIWN VFMQF +
Sbjct: 121 GCDCDRYMEIWNNVFMQFNR 140


>gi|291546607|emb|CBL19715.1| Alanyl-tRNA synthetase [Ruminococcus sp. SR1/5]
          Length = 383

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 152/386 (39%), Gaps = 29/386 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            +++E   + +   ++ D++ FY E GGQ  DTG        +++ +V +K   +  +  
Sbjct: 19  AKVLECREAKKGFHIILDESAFYPEGGGQPSDTGYLND----VKVKEVHEKEGELLHY-- 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 +     +   ID+  R  L   HS  H++   +    G      G  +  D + 
Sbjct: 73  --TDQPMEVGTEVQGRIDWARRFDLMQQHSGEHMVSGLIHEAYGY--DNVGFHMGSDTIT 128

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+  + P+  A+L  IE   N  I ++  +       E+       +    +   +VR+
Sbjct: 129 IDL--NGPLDEAQLAEIERKTNQKIWEDTQIKIIYPTAEELEKIDYRS--KKELTGQVRI 184

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V     D        C GTHV+ TGEI ++ ++S    R G+ RIE I G+R   +L   
Sbjct: 185 VEFPGVD-----ICACCGTHVTHTGEIGMVKLLSVEKFREGV-RIEMICGKRVLDYLNMV 238

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           +++   ++  L          VE + EE  +L+      +L  ++      + A    + 
Sbjct: 239 NDQNHQISVKLSAKMDKTAQAVERLQEENFRLK--GQVGQLVDDMCRKEAERYAGSGSVL 296

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             +  +D+  ++ + DA+ +  Q G   +   + +      +   +  L +F     A+L
Sbjct: 297 IFMDGMDADSVRKLADAVTQTCQ-GCCAVFSGNADGSYKYAMGEKDGDLRQFTKEMNAKL 355

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNK 884
                  G GGG+P   Q       K
Sbjct: 356 ------NGRGGGKPFFVQGSVQASEK 375


>gi|331091305|ref|ZP_08340145.1| hypothetical protein HMPREF9477_00788 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404466|gb|EGG84010.1| hypothetical protein HMPREF9477_00788 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 387

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 158/381 (41%), Gaps = 35/381 (9%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           VE     +K   VV ++T F++E GGQ  DTG   G    +++ DVQ+K +GI  H   +
Sbjct: 19  VESCEKEEKYYKVVLNRTAFFSEGGGQSADTGTLDG----VRVFDVQEK-DGILYH---M 70

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    ++   ID++ R      HS  H++   +    G   +  G  +  D +  D
Sbjct: 71  TEKPLEQGKTVTGKIDWEERFSKMQQHSGEHIVSGLIHRKYGY--NNVGFHLGQDTVTMD 128

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 +T  +L+ IE   N  + +NL +      +E+       + +  +   ++R+V+
Sbjct: 129 F--DGVLTKEQLREIELLANGAVVKNLDIQVDYPTKEELHTIEYRSKI--EIEGQIRIVT 184

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           ++      +    C   HV  TGEI L+ + +  + + G+ RI  + G RA +    ++ 
Sbjct: 185 IDG-----YDVCACCAPHVKKTGEIGLIKLTNVQNYKGGV-RITMLCGFRALADYNEKEA 238

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            ++ ++  +   +  +   VE++ EE  +L+   A  + +L     S  +      +   
Sbjct: 239 SVRKVSVLMSAKENEIDEAVEQLKEEKAQLKNEIALLQDKLLRSKASRIEPGQET-VCLF 297

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
            SE+     + +++ L +K      +  G   E    V+   + D           R  A
Sbjct: 298 DSELSGNAPRELVNLLLEKDVKICGVFFGNDSEGYRYVVGSRSVDT----------RPIA 347

Query: 861 KVLGG---GGGGGRPHMAQSG 878
           K L     G GGG+P M Q  
Sbjct: 348 KSLNETFSGRGGGKPEMVQGS 368


>gi|302386087|ref|YP_003821909.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           saccharolyticum WM1]
 gi|302196715|gb|ADL04286.1| Alanyl-tRNA synthetase, class IIc-like protein [Clostridium
           saccharolyticum WM1]
          Length = 384

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 150/367 (40%), Gaps = 28/367 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            +V+ D+T FY   GGQ  D G          + DV++ AEGI           L+    
Sbjct: 29  FQVLLDRTAFYPVGGGQPADRGTL----GEAAVLDVREMAEGIIH----FTDKPLKPGSR 80

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++ TID++ R  L  NHS  HLL   +    G  +   G  +  D +  D   + P+T  
Sbjct: 81  VIGTIDWERRFCLMQNHSGEHLLSGIVHKHYG--LDNVGFHMGKDEVTVDF--NGPLTLE 136

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           ++++ E  VNDII +N+PVV    ++E+       +    +   +VR++     D     
Sbjct: 137 QIEAAEAEVNDIIWRNIPVVEFYPSKEELSRMDYRS--KKELTGQVRLIEFPGGD----- 189

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C GTHV S+GEI +L +      + G+ R+  + G+ A      + + +  ++  L 
Sbjct: 190 VCACCGTHVMSSGEIGILKVTGMIHYKGGV-RVSMVCGRLALQDYGNKQKAVSGISILLS 248

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                V+  V+ + EE  K     ++   +L       +   D   +     ++   EL+
Sbjct: 249 AKPDQVLEAVDRLKEEGFKKDGRISRLSKELLERKTRDYPEWDGPLLVF-DRDLSPVELR 307

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
                L +  +  +++     +      L   ++D+    NA++           G GGG
Sbjct: 308 QYCTMLYEGKKGRVVLACSGGEGSYPYALGSGSQDMRALSNALN-------RRLNGRGGG 360

Query: 871 RPHMAQS 877
              MAQ 
Sbjct: 361 NALMAQG 367


>gi|183011890|gb|ACC37874.1| alanyl-tRNA synthetase [Archisepsis excavata]
          Length = 161

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/163 (45%), Positives = 98/163 (60%), Gaps = 10/163 (6%)

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   L + RLY
Sbjct: 1   CIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLGLPKDRLY 60

Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178
           +T +  DE        E  ++W  + GL  + I+     DNFW M ETGPCGPCSE+ FD
Sbjct: 61  VTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGNMKDNFWEMGETGPCGPCSELHFD 119

Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           +           + +    +EIWNLVF+QF ++      +LPK
Sbjct: 120 RIGG-RSVPELVNMDDPDVLEIWNLVFIQFNREADSSLKLLPK 161


>gi|94985303|ref|YP_604667.1| threonyl/alanyl tRNA synthetase, SAD [Deinococcus geothermalis DSM
           11300]
 gi|94555584|gb|ABF45498.1| Threonyl/alanyl tRNA synthetase, SAD [Deinococcus geothermalis DSM
           11300]
          Length = 399

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 147/394 (37%), Gaps = 19/394 (4%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAI 559
                   +   V  D + FY E GGQ GD G     G   ++TD +K K+ G+  H   
Sbjct: 15  FTATVTDRRDGAVALDASAFYPEGGGQNGDVGVLRWRGGEARVTDTRKDKSSGVIWHEG- 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E  +     S+   +D   R +    HSA HLL  A   +  +      S    +    
Sbjct: 74  -EGELPPVGASIRGEVDPVCRWRNMARHSAEHLLAQAFHRVNPAFAVAAVSLRNAE---S 129

Query: 620 DVTHSKPITSAELKSIEDNVND-IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            +  +     A++++ E  + + +    L + T  +  E+            K    VR+
Sbjct: 130 TIDLTGDPGEADVRAAERLLRETLARTELTLETLTVPEEELYRYPLRR--EAKVRGDVRL 187

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V     +G     + CGGTHV     +  + ++    IR G+ R+  + G+ A ++L   
Sbjct: 188 VIFRDAEGIPFDVSACGGTHVPCASMVAPVVVLRTERIRGGLTRVFFMAGEEASAYLADV 247

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
               ++LA     S  ++ GRV  +  E   L+      + +L         +  V  + 
Sbjct: 248 YRDARALAQSFSASVSDLPGRVAALATERDMLKAEGTALRARLARLLADAAPLETVAGVP 307

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             +  ++   L  + DAL    +  + + +             V     +  +A  L   
Sbjct: 308 LRLLNLEDPNL--LSDALAATPKGEVRVALASGG------RCGVGSG-REDVSAGKLL-E 357

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
           +A  L GG GGGRP +AQ       +  +A+  V
Sbjct: 358 AALRLTGGKGGGRPALAQGRTAAPEQFGEAVREV 391


>gi|311031431|ref|ZP_07709521.1| hypothetical protein Bm3-1_12936 [Bacillus sp. m3-13]
          Length = 400

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/401 (23%), Positives = 162/401 (40%), Gaps = 41/401 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K   V +QT FY E GGQ  DTG         ++T+VQ+   G   H+  +E+ +  T  
Sbjct: 28  KWYAVLEQTAFYPEGGGQPYDTGILDDH----KVTEVQE-INGEIRHY--LEQPLPETTQ 80

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILG-----SHVSQNGSCITPDGLRFDVTHS 624
            +   I+++ R      H+  HLL  A   +        H+ +  S I  D        +
Sbjct: 81  DVTGNINWERRYDHMQQHAGQHLLSAAFEELFSYKTKSFHLGKEASTIDLD--------A 132

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           K +T  E+   E  VN II +N  +  + + +E+         L    ++ +R+V +   
Sbjct: 133 KGLTEQEILETETLVNKIILENRKIEAKWVTKEELSDYPLRNELSV--SENIRLVIIP-- 188

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                    CGGTH  STG +  L I+S    +  + R+  + G R    L  + E L  
Sbjct: 189 ---DFDYNGCGGTHPHSTGGVASLKILSLEK-QKNMIRVSFVAGNRVLKQLHEKQEVLSE 244

Query: 745 LASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMS 798
           L+S L   Q  +   V  +     E+ ++L+ +  +  L+     L      ++  + + 
Sbjct: 245 LSSLLNAPQNGMSDTVTRMLGQSKEQAKELKDMKERL-LEYEAAALVSQTELVSGRSIIK 303

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLAR 857
            ++   +  EL+S+   L    +   + L+  +  K   V    +E DL  +F A ++  
Sbjct: 304 SVLQNREMAELQSMARKLVSTREDLNVFLIAENTGKLQFVGARGSESDLDMKFIANEVFA 363

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                   G GGGR +  Q GG      ++ I  +   L K
Sbjct: 364 FI-----NGKGGGRENFVQGGGETTLTGEEVIERIMLILLK 399


>gi|284048719|ref|YP_003399058.1| Threonyl/alanyl tRNA synthetase SAD [Acidaminococcus fermentans DSM
           20731]
 gi|283952940|gb|ADB47743.1| Threonyl/alanyl tRNA synthetase SAD [Acidaminococcus fermentans DSM
           20731]
          Length = 397

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 147/398 (36%), Gaps = 35/398 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              EV+ D+T  + E GGQL D G        + +    +    +           +   
Sbjct: 27  DHYEVILDRTVLFPEGGGQLSDKGWL----DMVPVYYASEDGPEVRHW----THAPVEPG 78

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++ + +D+  R      H   H+L +A     G+  +  G  +  D +  D+   + I 
Sbjct: 79  KTVTVKLDWPVRLDRMQQHCGEHILSYAFWKTCGA--NNVGFHMNEDSVFIDL--DQEID 134

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             + K  E   N+ +  N PV    ++  +            K    VR+V ++  D   
Sbjct: 135 EEKAKKAEWMANECLWANEPVSLHYVDASELGKYPLRK-KNEKLRGTVRLVDIKNGD--- 190

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C GTH   TG +  + I+     + G  RIE + G RA   +  ++  L+  ++F
Sbjct: 191 --ICTCCGTHPPYTGMVGSIQIIRFVRHKGG-SRIEFLCGNRALKAMHERNRILEETSNF 247

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHK---IADVNFMSHIIS 802
           L V   +V+  VE++ +E   L+       +  ++  + DL             +   + 
Sbjct: 248 LSVKAEDVLPAVEKLHQEILDLRGKVREKTQELIRFQLPDLLAQAPVLADGTRLLVLTLE 307

Query: 803 E--VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
               D K    +  A     + G++  V      +      ++E       A       A
Sbjct: 308 GTAADGKSAMKLASA-----EPGVLAAVFTKDGDRIMYQFALSEGAEGDCKA---CCTKA 359

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
             L GG GGGRP  AQ GG  G   +Q +  + + +KK
Sbjct: 360 NALFGGRGGGRPQSAQGGGTAGADWEQKVRELVAEIKK 397


>gi|167772611|ref|ZP_02444664.1| hypothetical protein ANACOL_03990 [Anaerotruncus colihominis DSM
           17241]
 gi|167665089|gb|EDS09219.1| hypothetical protein ANACOL_03990 [Anaerotruncus colihominis DSM
           17241]
          Length = 391

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 152/371 (40%), Gaps = 32/371 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               V  D+T FY E GGQ GDTG   G    +++ D Q   +G   H   +  G L   
Sbjct: 33  DAWSVTLDRTAFYPEGGGQPGDTGALGG----VRVCDTQDGPDGEIRH---ITDGPLAVG 85

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   ID+  R     +H+  H+L   L ++ G  V   G  +  D +  D+  S+ ++
Sbjct: 86  TAVHGQIDWPVRFSHMQHHTGEHILSGLLHSLYG--VDNVGFHMGRDTVTIDL--SRELS 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGG 687
             EL   E   N+ + +++PV     +   A A  A A    K  +  VR+V+V   D  
Sbjct: 142 WDELLRAEQLANETVWRDVPVRIEYPD---AGALAALAYRSKKALSGAVRIVTVPGAD-- 196

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C GTH + TGE+ ++ ++S    + G  R+    G RA      ++  + ++++
Sbjct: 197 ---VCACCGTHTARTGEVGIIKLLSAQRYKGG-TRVWLCCGGRALKDYEAKNASVHAISA 252

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDS 806
            L    G V G    +  E   L+   +  + QL        ++      + +  E ++ 
Sbjct: 253 LLSAKPGEVAGAAARMQRENEALRQRLSALRRQLFAY--RAKEVEQGARCAVLFEEAMEP 310

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
            +L+ +  AL  +   G+  ++   +  + S  +   +  +    A      +      G
Sbjct: 311 ADLRHLCMALTSRC--GVATVLAGGEGDRWSYAVGSEQTDVRPLGA------ALNETFDG 362

Query: 867 GGGGRPHMAQS 877
            GGG+P + Q 
Sbjct: 363 RGGGKPGLVQG 373


>gi|299561734|gb|ADJ36939.1| alanyl-tRNA synthetase [Dalmannia nigriceps]
          Length = 183

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/185 (41%), Positives = 99/185 (53%), Gaps = 15/185 (8%)

Query: 50  FTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F     P  +      V   QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG YFK 
Sbjct: 1   FLETVDPNSEMSKLVRVVNTQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGTWSFGDYFKL 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
              + AW+ L     L +  LY+T +  DE        E  ++W  I GL    I+  + 
Sbjct: 61  DICKWAWEFLIDSLKLPKDNLYVTYFGGDEKSGLDPDLECKQIWLDI-GLDVSHIVPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
            DNFW M + GPCGPCSEI FD+           +++    +EIWNLVF+QF ++     
Sbjct: 120 KDNFWEMGDIGPCGPCSEIHFDRIGG-RSVPELVNKDDPDVLEIWNLVFIQFNREKNGSL 178

Query: 217 FILPK 221
             LPK
Sbjct: 179 RPLPK 183


>gi|310659329|ref|YP_003937050.1| alanyl-tRNA synthetase-like protein [Clostridium sticklandii DSM
           519]
 gi|308826107|emb|CBH22145.1| Alanyl-tRNA synthetase related protein [Clostridium sticklandii]
          Length = 402

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 92/402 (22%), Positives = 157/402 (39%), Gaps = 44/402 (10%)

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
                     SS + AI++  E           ++V D+T FY E GGQ  D G      
Sbjct: 23  YYFNPYMIEASSNIVAILKDKEF---------YKIVLDETIFYPEGGGQPSDRGEIE--- 70

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + + DV K+ +GI  H+       L     +   ID+  R      HS  H L   + 
Sbjct: 71  -EIPVFDV-KEKDGIVYHYV----NELPKNSKVKSKIDFNRRFDFMQQHSGEHALSGVIL 124

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            + G      G  I    +  D+   K +T   L   E+  N  I +N  V   + + E 
Sbjct: 125 KLFGGA--NKGFHIGEQFVTIDINI-KDMTEEMLIEAENETNRYIFENQKVDQIVTDTEG 181

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
             A      +  +  + +RVVS+     G      C GTHV + GE+ ++ I+   S   
Sbjct: 182 LKAYPIRKEITAE--EDIRVVSM-----GEADCCACCGTHVRNLGEVGIIKIIKAESY-K 233

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ RI  + G RA +    +++ +KSL   L   +  ++ +V++  E+   L+      +
Sbjct: 234 GMTRISFLCGYRALNDYKEKNDIIKSLKKELSSEESMILTKVQKQREDISALKKQSDIIR 293

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
             L        K  +   ++ I  +VD   L  +   L +K  S  ++L      K    
Sbjct: 294 KDLAKNISLNIKADET--IAIIFDDVDFLTLVHIESILLEK--SNTVILATTVDNK---- 345

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSG 878
           +  VT++     +A++L +   + +    G GGG    AQ  
Sbjct: 346 ITAVTKN-----DAINLGQFFKENIKSYNGKGGGSKDKAQGS 382


>gi|303258323|ref|ZP_07344326.1| putative alanyl-tRNA synthetase [Burkholderiales bacterium 1_1_47]
 gi|302858769|gb|EFL81857.1| putative alanyl-tRNA synthetase [Burkholderiales bacterium 1_1_47]
          Length = 388

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 147/396 (37%), Gaps = 36/396 (9%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V     G+K  EVV D T FY E GGQ  D G   G+   + +    K+     VH+   
Sbjct: 21  VTSCREGKKGFEVVLDDTAFYPEGGGQPSDEGTL-GEAKVIFV----KRVGPEIVHYI-- 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    +++  ID++ R     NH+  H+    +       +   G  + PD +  D
Sbjct: 74  -DKPLEVGSTVIGKIDWERRFDNMQNHTCEHIFSGLVHQKY--KLENVGFHMDPDDITVD 130

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
              S  I    +  +E  VN  I Q++ +       E   A    +    + +  VR+V+
Sbjct: 131 F--SGEIPMESIPELEQLVNQAITQDIDIKIEFPTEEVLEAMEYRS--KKELHGVVRIVT 186

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D        C GTHV  +GEI +  I+  S  R G  R+  + G+RAR     + +
Sbjct: 187 IPGCD-----RCACCGTHVRRSGEIGMFKILDASKHRGG-TRVRFVAGERARRDYGWRVK 240

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKIADVNFM 797
           ++  +++        +        EE +      A+R    LQ     L          +
Sbjct: 241 EIAKVSALFSAKPHEIAKAAANFIEEGKTKDQKSAQRTERYLQFVASGLVSRN----GLV 296

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
                ++   ELK     L++K     I +    +     V+     +L     +++   
Sbjct: 297 KVFEEDLSPFELKRFAGMLKEKFSESSIGVFSSIEGGFNYVIASSDPELPKISKSLN--- 353

Query: 858 LSAKVLGGGGGGGRPHMAQSGGP-NGNKADQAIAGV 892
             AK+   G GGGR  M Q     +    ++A   +
Sbjct: 354 --AKL--NGRGGGRDGMVQGTYRVDKKAVEEAFDEI 385


>gi|302337401|ref|YP_003802607.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta smaragdinae DSM
           11293]
 gi|301634586|gb|ADK80013.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta smaragdinae DSM
           11293]
          Length = 391

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 27/401 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  ++  + + +  EV+ D+T FY E GGQ  DTG          + DV+K    +    
Sbjct: 16  KAAVLSSSKTDKGYEVLLDKTQFYPEGGGQPSDTGWI----GEQPLLDVKKVGSDVVHLL 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     E  ++  +D+ +R      H+A H+L   L    G  ++     +  D L
Sbjct: 72  -----QNRPAEGPVLCRLDWNHRFDYMQQHTAQHILSAVLYREFG--INTLAVHLGEDFL 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             +V   + I    L+ ++    +++ +NLP+ T   + E   +         K +  +R
Sbjct: 125 TIEVDR-EEIDEGVLEKVDFLAQELVCRNLPIETFWTDDEKVASFDLRRT--PKVSGHIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +     G + +  CGG H S TGE++L+       IR G  RI+   G RA      
Sbjct: 182 IVRL-----GNYDAVACGGVHCSKTGEVLLIRRCGVERIR-GHMRIQWKAGGRAFRDYGE 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVN 795
           + E +  L     V    +  R  ++  E ++L++     + +    +      + A  +
Sbjct: 236 KMELVTRLCELNSVKSDELEERSRQLIAEQQRLKVTIESLRREQAAAEARNLSEQAAKAS 295

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
           F+S      +   L++V DAL    +  +++ +    E     L+     L   FN  +L
Sbjct: 296 FLSRTFVGQEKDFLRNVADALT--GEKPLLVALTNKTENGVQWLVAALGGLDFPFN--EL 351

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            +     +  G GGG+  M Q  G N    +         L
Sbjct: 352 RKELLSAI-DGKGGGKAPMWQGIGSNPEGIEAFYERCRKAL 391


>gi|310644107|ref|YP_003948865.1| threonyl/alanyl tRNA synthetase sad [Paenibacillus polymyxa SC2]
 gi|309249057|gb|ADO58624.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus polymyxa SC2]
          Length = 391

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 150/382 (39%), Gaps = 30/382 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              I +         V+ ++T FY   GGQ  DTG   G    +++ DV    +G   H 
Sbjct: 16  DTHITQSMERDGAFFVMLEETAFYPHGGGQPCDTGTIQG----IRVLDVF-LEDGDIWHQ 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L  E  +   +D++ R      HS  HLL      +LG+        +  +  
Sbjct: 71  VE----RLPNEGKVACQLDWERRFDHMQQHSGQHLLSAVCLVLLGART--ESFHLGQEYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             DV  S+ +TSA+L +IE  VN  I  N  + +  +  E         +   K  + +R
Sbjct: 125 TIDVNCSE-VTSAQLSAIEQEVNQQIYNNRSIKSYFVTHEQWKDIPLVKM--PKVTENIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHV+ TGEI ++  +     + G+ RI    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVAQTGEIGMIKCLKWEK-QKGMARIHFKCGARALHDFND 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN 795
               L  L++     + +++ R E+  +E+++L  Q+   + +            +   +
Sbjct: 236 SVRILDVLSAKFNTGRKDILTRFEKWEQEHKQLKAQVELLQEENASYQAKELLSAVQG-H 294

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            ++++  +   +E++ +   L    +  +++L   + E K  +      +     +    
Sbjct: 295 VLAYVFEQKSIQEMQQLAAKLTA--EHDLLVLFATTAENKIIL----AHNGTQSVSCGAF 348

Query: 856 ARLSAKVLGGGGGGGRPHMAQS 877
            + +      G GGG    AQ+
Sbjct: 349 LKENLGAF-QGKGGGSNQSAQA 369


>gi|188589051|ref|YP_001921224.1| dhha1 domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499332|gb|ACD52468.1| dhha1 domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 399

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 173/404 (42%), Gaps = 28/404 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI E    G +  +V ++T F+   GGQ  D G        +++ +V +K + +  H  
Sbjct: 16  AEIDEIKEVGNEFHIVLNKTAFFPGGGGQRHDLGKI----DEIEVLNVYEK-DDLIYHVL 70

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +   +    ++  +ID+  R     +H A H+L  +   +     + N   +      
Sbjct: 71  DRKPSRIH---NVKCSIDWLRRLDGMNHHLAQHILSASFFKLF----NINTIAVHHGNEF 123

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
             +  +  +T  +++S E   ND+I ++L V      + +         L    N+++R+
Sbjct: 124 STIDFNSILTEEQVRSCEKYANDVIGESLDVEFLTPTKRELKNMKLRRDLPDT-NEQIRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V ++  D        C G H  ST ++ L+ I      + G  RIE ITG +A S  + +
Sbjct: 183 VKIDDLDLN-----ACCGVHPKSTLDLRLIKIKKYEKHKKG-SRIEFITGSKAVSDSLEK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD 793
           D    S+  +L  ++   +  +E +  E + +   +    ++L+  ++     +  +I D
Sbjct: 237 DSFANSMCKYLNCNEKEALNGIENLKLELKNVLNENKNISIELSNYEIKEIIENSAQIND 296

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
           +N + ++ +    K + +++  + +K     I L+ +  + K +++   ++++    N  
Sbjct: 297 INIIKYVYNNKTLKFVNTIISQITEKDNK--IALIALVNDDKINLIFSCSKNI-KNVNMG 353

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +L +  A VL  G GGG   MAQ  G N    D  +    + LK
Sbjct: 354 ELLKD-AIVLIDGRGGGNQTMAQGAGKNLLNLDNTLDYAFNKLK 396


>gi|330974797|gb|EGH74863.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 152

 Score =  197 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 74/153 (48%), Positives = 101/153 (66%), Gaps = 2/153 (1%)

Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN 271
                  LP  S+DTGMGLER++ VLQ   +NY+IDLF+ L+ AS +  G     +N  +
Sbjct: 2   ADGVLHPLPAPSVDTGMGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGC--SNDNQAS 59

Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCT 331
            +V+ DH+RS  FLIADG+LP+NEGRGYVLRRI+RRA  +   LG        ++ AL  
Sbjct: 60  LKVVADHIRSCGFLIADGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVA 119

Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364
           EMGSA+PEL+Q +  IE  L+ E+E+F KTL++
Sbjct: 120 EMGSAFPELVQQQSHIERVLKGEEEQFAKTLEQ 152


>gi|183011968|gb|ACC37913.1| alanyl-tRNA synthetase [Sepsis thoracica]
          Length = 168

 Score =  197 bits (502), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEXSGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 168


>gi|326389883|ref|ZP_08211447.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994151|gb|EGD52579.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 400

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 166/409 (40%), Gaps = 41/409 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              IV++     K E+V D+T FY E GGQ  DTG   G    +++  + ++ + ++   
Sbjct: 16  DANIVDKRKINNKWELVLDKTYFYPEGGGQPSDTGLIDG----IKVYKIYEENDTVYHL- 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH-----VSQNGSCI 612
                      + +   +D++ R      H+  HLL   L    G+H     +    S I
Sbjct: 71  ----ADKCPKGIKVHCQVDWERRFDHMQQHTGQHLLSAVLEKKYGAHTQSFSIGDKSSHI 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           T     F+   +  +           VN  + +N+PV T   + E             + 
Sbjct: 127 TITKDTFNEEEAFEVE--------KEVNSFVYKNIPVKTYFADEEMLKKLPLRK--QPQV 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +E  D        CGGTHV +TGEI ++ I        GI R+E + G RA 
Sbjct: 177 SENIRIVEIEGIDYS-----PCGGTHVMTTGEIGIVKIKKWEKTNKGI-RLEFVAGFRAL 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS----- 787
                ++  + +L   L   + N++  V ++ EE ++++      K  + +E+       
Sbjct: 231 YDYHIKNNYVNALCHLLSEQEENILEHVLKLLEENKEVKKEVNILKENILLEESRNLIKS 290

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                 ++ +  +     ++ELK +   +        I ++G  + +   +++  + D+ 
Sbjct: 291 SELHGGIHIVYKLYENRTTEELKILAKYIVS--NDKCIAILGNKRGETGDLVVSRSGDVD 348

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              N     +   +V   G GGG  +M Q GG + ++ + A+    S +
Sbjct: 349 IVVNG--FFKEVLRVF-DGKGGGNAYMCQ-GGVSLDRLELAMDKALSIV 393


>gi|183011900|gb|ACC37879.1| alanyl-tRNA synthetase [Australosepsis niveipennis]
 gi|183011962|gb|ACC37910.1| alanyl-tRNA synthetase [Sepsis neocynipsea]
          Length = 168

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 168


>gi|183011956|gb|ACC37907.1| alanyl-tRNA synthetase [Sepsis fulgens]
 gi|183011964|gb|ACC37911.1| alanyl-tRNA synthetase [Sepsis orthocnemis]
 gi|183011970|gb|ACC37914.1| alanyl-tRNA synthetase [Sepsis violacea]
          Length = 168

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 168


>gi|183011948|gb|ACC37903.1| alanyl-tRNA synthetase [Sepsis biflexuosa]
          Length = 168

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEGSGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 168


>gi|299561774|gb|ADJ36959.1| alanyl-tRNA synthetase [Campiglossa pygmaea]
          Length = 169

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 75/171 (43%), Positives = 99/171 (57%), Gaps = 15/171 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +   T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMSKWVRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
                AW+ LT   +L + RLY+T +  D+        E  ++W  + GL  + I+  + 
Sbjct: 61  EMCTWAWEFLTDRMNLPKDRLYVTYFGGDKASGLEPDLECKQMWLDL-GLRPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ 207
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQ 169


>gi|183011954|gb|ACC37906.1| alanyl-tRNA synthetase [Sepsis flavimana]
          Length = 168

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICTWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 168


>gi|210609958|ref|ZP_03288187.1| hypothetical protein CLONEX_00371 [Clostridium nexile DSM 1787]
 gi|210152704|gb|EEA83710.1| hypothetical protein CLONEX_00371 [Clostridium nexile DSM 1787]
          Length = 394

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 159/385 (41%), Gaps = 42/385 (10%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +V    SG+  EVV D+T F+ E GGQ  DTG         ++TDVQ+KA GI  H    
Sbjct: 19  VVSCEQSGEVYEVVLDRTAFFPEGGGQYADTGRL----DDAKVTDVQEKA-GIIYHK--- 70

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    ++  TID++ R      HS  H++   +  + G      G  +  D +  D
Sbjct: 71  TNQSLEIGKTVQGTIDWEERFSKMQQHSGEHIVSGIVHAVYGY--DNVGFHMGKDAITMD 128

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
              S  I+  ELK IE   N+ + ++L +      +E+  +    + +  +   +VR+V 
Sbjct: 129 FNGS--ISKEELKVIERKANEAVVKSLDIKVLYPAKEELDSIAYRSKI--EIEGQVRIVE 184

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +       +    C   HV  TGEI L+ +++  + + G+ RI  + G RA      + E
Sbjct: 185 IPG-----YDVCACCAPHVKKTGEIGLIKLLNVQNYKGGV-RISMLCGFRALQDYEQKAE 238

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV----NF 796
            +K ++  L   +  V   V  + +E         K K+    + L  +K+  +      
Sbjct: 239 SVKKISVLLSAPEEEVFSEVTRLKQEI-----SSGKAKVSQLQQKLLVYKVEQIPQSQEV 293

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +     E++    + + + + +   S   +  G  K+    V+   + D           
Sbjct: 294 VVWFEEELEGNAPRELTNLIIENGASIGAVFAGDEKDGYRYVIGSKSCDT---------- 343

Query: 857 RLSAKVLG---GGGGGGRPHMAQSG 878
           R+ +K L    GG GGG+P M Q  
Sbjct: 344 RIFSKRLNEKFGGRGGGKPEMVQGS 368


>gi|183011920|gb|ACC37889.1| alanyl-tRNA synthetase [Dicranosepsis papuana]
          Length = 168

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 95/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK IF G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPIFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICTWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 168


>gi|153811258|ref|ZP_01963926.1| hypothetical protein RUMOBE_01650 [Ruminococcus obeum ATCC 29174]
 gi|149832756|gb|EDM87840.1| hypothetical protein RUMOBE_01650 [Ruminococcus obeum ATCC 29174]
          Length = 383

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 152/381 (39%), Gaps = 32/381 (8%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V E   G+K   ++ DQT FY E GGQ  D G  + D   L++     + +G  +H+   
Sbjct: 21  VLECREGKKGYEIILDQTAFYPEGGGQPYDLG-ILNDVEVLEV----HEKDGEIIHY--- 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
            +  +     +   ID+  R  L   HS  H++   +    G      G  ++ D +  D
Sbjct: 73  TKEAIEAGSDVTGKIDWHRRFDLMQQHSGEHIVSGLVHEAYGY--DNVGFHMSSDVITVD 130

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  S  ++ A+L  IE   N  I +N  V     +RE+       +    +   +VR+V 
Sbjct: 131 L--SGVLSEAQLAEIEVETNRKIWENSEVEITYPSREELDKLDYRS--KKELTGQVRLVR 186

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
               D        C GTHV+ TGEI  + I++  +   GI R+  I G+R   +L   ++
Sbjct: 187 FPGSDL-----CACCGTHVTHTGEIGAVKILTVENFHEGI-RLTMICGKRVMDYLNMVND 240

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + + ++  L    G     V  + +E  +L+  ++        VE  +      V     
Sbjct: 241 QNRQVSMKLSAKIGETAAAVARLQDENFRLKGQVNHMFDELCTVEAKNWEDAGSVLLFH- 299

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
               +++ +++ + DA+ +K  SG   +   + +      I      L +F      +  
Sbjct: 300 --EGLEADQVRRMADAVMQKC-SGCCAVFSANGDGSYKYAIGEQNGDLRQFT-----KEM 351

Query: 860 AKVLGGGGGGGRPHMAQSGGP 880
              L  G GGG+P   Q    
Sbjct: 352 NAALN-GRGGGKPFFVQGSVK 371


>gi|325262863|ref|ZP_08129599.1| alanyl-tRNA synthetase family protein [Clostridium sp. D5]
 gi|324031957|gb|EGB93236.1| alanyl-tRNA synthetase family protein [Clostridium sp. D5]
          Length = 389

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 50/401 (12%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G+  EVV D+T F+ E GGQ  DTG         ++ DV +K +GI  H   V    +
Sbjct: 24  PKGEYYEVVLDRTAFFPEGGGQYADTGWLEDS----KVMDVWEK-DGIIYH---VTEAPV 75

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   ID+  R      H+  H++   +    G   +  G  +       D     
Sbjct: 76  EENREITGKIDWDMRFMKMQQHTGEHIVSGLVHARFGY--NNVGFHLGSGDCTMDF--DG 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            IT  EL+ IE   N+   +NL V     ++E+ ++    + +  +    VR+V++    
Sbjct: 132 EITKEELREIEWQANEAAVKNLEVQVSWPSKEELVSLEYRSKI--EIEGEVRIVTIPG-- 187

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
              +    C   HV  TGEI L+ + +    + G  R+  + G RA +    +++ +KS+
Sbjct: 188 ---YDVCACCAPHVKKTGEIGLIKLTNVQRYKGGA-RVTMLCGFRALADYDSKEQHVKSI 243

Query: 746 ASFLKVSQGNVVGRVEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           ++ L   +  +      + EE    + +     KR L+    ++S  +     F      
Sbjct: 244 SALLSAKEEEISQAAGRMKEECGRLKAVLAEKQKRLLEYRAAEISGEE----TFACLFEE 299

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           E++    + +M+ +  +      + +    +    V+  + ED+          R  AK 
Sbjct: 300 ELEGDGPRILMNLVLARGIECCAVFLKTGDKSWRYVIGSMGEDM----------RPVAKG 349

Query: 863 LG---GGGGGGRPHMAQSG--GPNGNKADQAIAGVASFLKK 898
           L     G GGG+P M Q    G            V ++++K
Sbjct: 350 LNEEFCGRGGGKPEMVQGSLQGKE--------EDVRAWIEK 382


>gi|183011950|gb|ACC37904.1| alanyl-tRNA synthetase [Sepsis coprophila]
          Length = 170

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERXGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+     DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 122 HILPGNMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 170


>gi|299561756|gb|ADJ36950.1| alanyl-tRNA synthetase [Toxoneura superba]
          Length = 171

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/171 (45%), Positives = 99/171 (57%), Gaps = 15/171 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +   T  QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTADPNSDMAKWVRTTNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
             I  AW+ LT   +L + RLY+T +        + D E  + W  + GL  + II  + 
Sbjct: 61  EIISWAWEFLTDRLELPKDRLYVTYFGGHPESGLEPDLECRQFWIDM-GLKEEHIIPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ 207
            DNFW M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQ 169


>gi|315648430|ref|ZP_07901529.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus vortex V453]
 gi|315276124|gb|EFU39470.1| Threonyl/alanyl tRNA synthetase SAD [Paenibacillus vortex V453]
          Length = 393

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 155/384 (40%), Gaps = 33/384 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  I ++      + +V ++T FY   GGQ  D G       ++ + DV    EG  +H 
Sbjct: 16  ETRITQKLEREDGIYLVLEETAFYPHGGGQPCDLGWI----DKIPVLDVV-LEEGAILHK 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                     +  +   +D+  R     +HS  HLL      +           +  D  
Sbjct: 71  VEF----FPEKEEVGCHLDWDRRFDHMQHHSGQHLLSAMC--LEAFQAETLSFHLGQDYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             DV  S  ++ AEL  +E  +ND I  N  V    ++RE A  +    +   K  D +R
Sbjct: 125 TIDVARSG-LSQAELMMLELEINDQIYLNRKVSNYFVSREQA--AVLPLVKQPKVTDDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHVS+TGEI ++ ++     + G  RI    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVSATGEIGMIKLLRAEK-QKGHVRIYFKCGYRALKEFNI 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADV 794
             E L SL++    ++  +  R+ +   E ++LQ   +  K + +    E L   +    
Sbjct: 236 GMEILGSLSARFNTAKEEIPDRIAKWDLEQKQLQAELSAVKAENDVYLAEKLLADRQG-- 293

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             + H+ ++   K+++++   L ++  + +I L     + K  +           F  + 
Sbjct: 294 RLIQHVFADKPLKDMQNLTAKLTEQ--ADVIALFVSKTDHKVVLAQGERGPACGAFFKLH 351

Query: 855 LARLSAKVLGGGGGGGRPHMAQSG 878
           LA        GG GGG   MAQ+G
Sbjct: 352 LADY------GGKGGGSDKMAQAG 369


>gi|183011908|gb|ACC37883.1| alanyl-tRNA synthetase [Dicranosepsis crinita]
          Length = 171

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 94/170 (55%), Gaps = 15/170 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPXFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
            I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +E
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 171


>gi|307266901|ref|ZP_07548420.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918058|gb|EFN48313.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 406

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 164/409 (40%), Gaps = 41/409 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              I+++     K E+V D+T FY E GGQ  DTG   G    +++  + ++ + ++   
Sbjct: 16  DANIIDKRKINNKWELVLDKTYFYPEGGGQPSDTGLIDG----IKVYKIYEENDTVYHL- 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH-----VSQNGSCI 612
                      + +   +D++ R      H+  HLL   L    G+H     +    S I
Sbjct: 71  ----ADKCPEGIKVHCQVDWERRFDHMQQHTGQHLLSAVLEKKYGAHTQSFSIGDKSSHI 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           T     F+   +  +           VN  + +N+PV T   + E             + 
Sbjct: 127 TITKDTFNEEEAFEVE--------KEVNSFVYKNIPVKTYFADEEMLKKLPLRK--QPQV 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +E  D        CGGTHV +TGEI ++ I        GI R+E + G RA 
Sbjct: 177 SENIRIVEIEGIDYS-----PCGGTHVKTTGEIGIVKIKKWEKTNKGI-RLEFVAGFRAL 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS----- 787
                ++  + +L   L   + N++  V ++ EE ++++      K  + +E+       
Sbjct: 231 YDYHIKNNYVNALCHLLSEQEENILEHVLKLLEENKEVKKEVNILKENILLEESRNLIKS 290

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                 ++ +  +     ++E+K +   +        I ++G  + +   +++  + D+ 
Sbjct: 291 SELHGGIHIVYKLYENRTTEEIKILAKYIVS--NDKCIAILGNKRGETGDLVVSRSGDVD 348

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
              N     +   +V   G GGG  +M Q G    ++ + A+    S +
Sbjct: 349 IVVNG--FFKEVLRVF-DGKGGGNAYMCQGGVSQ-DRLELAMDKALSIV 393


>gi|18309700|ref|NP_561634.1| DHHA1 domain protein [Clostridium perfringens str. 13]
 gi|110799085|ref|YP_695166.1| DHH domain-containing protein [Clostridium perfringens ATCC 13124]
 gi|168214312|ref|ZP_02639937.1| DHHA1 domain protein [Clostridium perfringens CPE str. F4969]
 gi|18144377|dbj|BAB80424.1| truncated alanine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110673732|gb|ABG82719.1| DHHA1 domain protein [Clostridium perfringens ATCC 13124]
 gi|170714209|gb|EDT26391.1| DHHA1 domain protein [Clostridium perfringens CPE str. F4969]
          Length = 400

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 28/405 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E   L+   +L   +D++ R      H   HLL      + G++    G  +  +  
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEIS 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +    ++  E   N +I +NL V +   ++++         L  K ++ +R
Sbjct: 125 TVDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP-KTDEEIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        C G H  +T ++ ++ I           RIE + G RA S    
Sbjct: 182 IVEIVGLDLN-----ACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSDFFT 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           +DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I 
Sbjct: 236 KDEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N 
Sbjct: 296 SITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNM 352

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            D+ + +   L  G GGG    AQ GG N    + AI    + ++
Sbjct: 353 SDILKDTI-TLIDGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|308070856|ref|YP_003872461.1| Predicted metal-dependent hydrolase [Paenibacillus polymyxa E681]
 gi|305860135|gb|ADM71923.1| Predicted metal-dependent hydrolase [Paenibacillus polymyxa E681]
          Length = 391

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 150/382 (39%), Gaps = 30/382 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              I +      K  V+ ++T FY   GGQ  DTG   G    +++ DV    +G   H 
Sbjct: 16  DTHITQSMERDGKYLVMLEETAFYPHGGGQPCDTGTIQG----VRVLDVV-LEDGDIWHQ 70

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L  +  +   +D++ R      HS  HLL      +LG+        +  +  
Sbjct: 71  VE----RLPEDRKVACQLDWERRFDHMQQHSGQHLLSAVCLELLGART--ESFHLGQEYA 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             DV  S  IT A+L +IE  VN  I  N  + +  +  E             K  + +R
Sbjct: 125 TIDVNCS-DITPAQLSAIEQEVNQQIYSNRSIKSYFVTHEQLQDIPLVKT--PKVTEDIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +E  +        CGGTHV+ TGEI ++  +     + G+ RI    G RA      
Sbjct: 182 IVEIEGIEYN-----ACGGTHVAQTGEIGIIKCLKWEK-QKGMARIHFKCGARALQDFND 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN 795
             + L  L++     + +++ R E+  +E+++L  Q+   + +            +   +
Sbjct: 236 SVQILDVLSTKFNTGRKDILTRFEKWEQEHKQLKAQVELLQEENASYQAKELLSAVQG-H 294

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            ++H+  +   ++++ +   L    +  +++L   + E K  +    T+ +         
Sbjct: 295 VLAHVFEQKSLQDMQQLATKLTA--EHDLLVLFATTAENKILLAHNGTQSVA----CGAF 348

Query: 856 ARLSAKVLGGGGGGGRPHMAQS 877
            + +      G GGG    AQ+
Sbjct: 349 LKENLGAFH-GKGGGSNQSAQA 369


>gi|168217153|ref|ZP_02642778.1| DHHA1 domain protein [Clostridium perfringens NCTC 8239]
 gi|182380730|gb|EDT78209.1| DHHA1 domain protein [Clostridium perfringens NCTC 8239]
          Length = 400

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 172/405 (42%), Gaps = 28/405 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E   L+   +L   +D++ R      H   HLL      + G++    G  +  +  
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTY--GFHLGKEVS 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +    ++  E   N +I +NL V +   ++++         L  K ++ +R
Sbjct: 125 TVDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP-KTDEEIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        C G H  +T ++ ++ I           RIE + G RA S    
Sbjct: 182 IVEIVGLDLN-----ACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSDFFT 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           +DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I 
Sbjct: 236 KDEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N 
Sbjct: 296 SITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNM 352

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            D+ + +   L  G GGG    AQ GG N    + AI    + ++
Sbjct: 353 SDILKDTI-TLIDGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|46200150|ref|YP_005817.1| alanyl-tRNA synthetase related protein [Thermus thermophilus HB27]
 gi|46197778|gb|AAS82190.1| alanyl-tRNA synthetase related protein [Thermus thermophilus HB27]
          Length = 392

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 140/396 (35%), Gaps = 38/396 (9%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           VE   S +K    V  QT FY E+GGQ  D G   G    +Q+    ++ +  F     V
Sbjct: 34  VERVWSDEKGHYAVLSQTLFYPESGGQPADRGVLRGPFGEVQVLHAYEEEKA-FGDVVHV 92

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               +   + +   ID+  R +    H+A HLL  AL    G H       ++ D     
Sbjct: 93  LSAPIPEGVEVEGEIDWPRRFRHMQRHTAQHLLSQALLRAGGYHTV----AVSLDSPVCT 148

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V   +    A +   E   N  +  + PV    ++ E+            K   +VR+V 
Sbjct: 149 VDLEEEAEEAGVLEAEALANFAVYADYPVEAFYVSEEELARYPLRR--PPKVRGKVRLVR 206

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G    A CGGTH+ ++ +   + ++     + G  R+  + G  A      +  
Sbjct: 207 I-----GDFDLAACGGTHLKTSAQAGPIKVLKWERYKGG-TRVYFMAGWEALEDYHAKHA 260

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L  LA     +   +   + ++ +E   L+  +   +  L    L          +   
Sbjct: 261 LLARLALAFSTNPLELEKPIRKLQDELYALKGENQALREGLAEALLPRALEEKALLVPLP 320

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +              L K++       + ++ E +   +     ++L+R  A        
Sbjct: 321 VLG-----------ELGKRLARFEGTFLLVAPEGRFVAVGPRRGEVLERLKA-------- 361

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               GG GGG+    Q   P   +A +A+A V   L
Sbjct: 362 ---LGGRGGGK-EAVQGALP-PGRAVEALARVRELL 392


>gi|110801783|ref|YP_698031.1| DHH domain-containing protein [Clostridium perfringens SM101]
 gi|110682284|gb|ABG85654.1| DHHA1 domain protein [Clostridium perfringens SM101]
          Length = 400

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 171/405 (42%), Gaps = 28/405 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHI 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E    +   +L   +D++ R      H   HLL      + G++    G  +  +  
Sbjct: 70  LEKEPKKFK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEIS 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +    ++  E   N +I +NL V +   ++++         L  K ++ +R
Sbjct: 125 TVDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP-KTDEEIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        C G H  +T ++ ++ I           RIE + G RA S    
Sbjct: 182 IVEIVGLDLN-----ACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSDFFT 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           +DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I 
Sbjct: 236 KDEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N 
Sbjct: 296 SITLVNEIFDGEDTKHVGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNM 352

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            D+ + +   L  G GGG    AQ GG N    + AI    + ++
Sbjct: 353 SDILKDTI-TLIDGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|291549913|emb|CBL26175.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Ruminococcus torques L2-14]
          Length = 404

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 161/419 (38%), Gaps = 33/419 (7%)

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             +   +   S   A+V + E  E+        V  D+T F+ E GGQ  DTG       
Sbjct: 13  EKLFYNDSHLSKFTAMVLECEPYEK--KEGCYAVELDRTAFFPEGGGQYADTGKLKD--- 67

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             +++DV +K  G  +H   +          +   ID++ R      H+  H++   +  
Sbjct: 68  -AKVSDVWEK-NGRILH---ITDQPFEAGEIVEGEIDWKTRFMKMQQHTGEHIVSGIVHA 122

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
             G   +  G  +  +    D      I+   L+ IE   N  + +NL +     ++E+ 
Sbjct: 123 RYGF--NNVGFHLGTEDCTMDF--DGEISKEALQEIELEANRAVWKNLTIEVSYPSKEEL 178

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 + +  +   +VR+VSV       +    C   HV  TGEI ++ +V+    + G
Sbjct: 179 EELDYRSKI--EIEGQVRIVSVPG-----YDICACCAPHVERTGEIGMIKLVNMQRYKGG 231

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           + R+  + G RA +    + E+ + +++ L   +      V  + EE   L+    +++ 
Sbjct: 232 V-RVTMLCGSRALTDYEKKQEQNRKISALLCAKEYETAEAVGHLKEEMDSLKRTLVEKER 290

Query: 780 QLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           QL    +    +  +   +     ++ +  ++  ++ + +K +    +  G        V
Sbjct: 291 QLV--HIWAQSVPEEEKTVCMFSEDISADAMRQYVNEVLEKERILCAVFYGNDAAGYRYV 348

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP-NGNKADQAIAGVASFL 896
           +   T+DL      ++ A         G GGG+P M Q        K  + I  +A  L
Sbjct: 349 IGSRTQDLRAFSKMLNAAFE-------GRGGGKPEMVQGTVKGEAGKIREWIQKIAEEL 400


>gi|251779379|ref|ZP_04822299.1| dhha1 domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083694|gb|EES49584.1| dhha1 domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 399

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 170/395 (43%), Gaps = 28/395 (7%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G +  +V D+T F+   GGQ  D G        +++ +V +K + +  H    +   +  
Sbjct: 25  GNEFHIVLDKTAFFPGGGGQRHDLGKI----DEIEVLNVYEK-DDLIYHVLDRKPSRIH- 78

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++  +ID+  R     +H A H+L  +   +     + N   +        +  +  +
Sbjct: 79  --NVKCSIDWLRRLDGMNHHLAQHILSASFFKLF----NINTIAVHHGNEFSTIDFNSIL 132

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  +++S E   ND+I ++L V      + +         L    N+++R+V ++  D  
Sbjct: 133 TEEQVRSCEKYANDVIGESLDVEFLTPTKRELKNMKLRRDLPDT-NEQIRIVKIDDLDLN 191

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C G H  ST ++ L+ I      + G  RIE ITG +A S  + +D    S+  
Sbjct: 192 -----ACCGVHPKSTLDLRLIKIKKYEKHKKG-SRIEFITGSKAVSDSLEKDSFANSMCK 245

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIIS 802
           +L  ++   +  +E +  E + +   +    ++L+  ++     +  +I D++ + ++ +
Sbjct: 246 YLNCNEKEALNGIENLKLELKNVLNENKNISIELSNYEIKEIIENSAQINDIHIIKYVYN 305

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
               K + +++  + +K     I L+ +  + K +++   ++++    N  +L +  A V
Sbjct: 306 NKTLKFVNTIISQITEKDNK--IALIALVNDDKINLIFSCSKNI-KNVNMGELLKD-AIV 361

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L  G GGG   MAQ  G N    D  +    + LK
Sbjct: 362 LIDGRGGGNQTMAQGAGKNLLNLDNTLDYAFNKLK 396


>gi|15894193|ref|NP_347542.1| alanyl-tRNA synthetase-like protein [Clostridium acetobutylicum
           ATCC 824]
 gi|15023805|gb|AAK78882.1|AE007606_2 Alanyl-tRNA synthetase related protein [Clostridium acetobutylicum
           ATCC 824]
 gi|325508321|gb|ADZ19957.1| Alanyl-tRNA synthetase related protein [Clostridium acetobutylicum
           EA 2018]
          Length = 387

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 90/404 (22%), Positives = 164/404 (40%), Gaps = 37/404 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G+IV+   +  K E+V D+T FY E GGQ  D G        + +  V +K  G  ++H
Sbjct: 16  EGKIVDVLENDGKYEIVLDETSFYPEGGGQPCDLGTINN----IPVEYVYEK--GDTIYH 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            + ER       +    +D+  R+     H+  HLL  A   +        G  +  D +
Sbjct: 70  VMKER---PEGNTAKCKVDFLRRQDNIQQHTGEHLLSAAFFKLYNG--VNYGFHMGEDYV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+   + +T+  +K IE   N  I  N+   T  M++ +A        +  K   ++R
Sbjct: 125 TIDIDM-EEVTNDMIKKIEAEANAYIYANVETKTYFMSKPEAEKLPLRKAI--KAEGKIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V       G    + C GTHV  TGE+ ++ ++       G+ R+    G+RA      
Sbjct: 182 IV-----QLGDVDYSACCGTHVVRTGEVGIIKVLRTEKY-KGMTRVYFKCGRRAFDEYSK 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +   +  L   L + + N++ +V+   EE     L     + + N   L   KI + N  
Sbjct: 236 EHNIITKLQKNLSIDEDNILNKVQTTMEEISN--LKKKLLEYKKNEAKLEVEKIKEKNNN 293

Query: 798 SHII---SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             I     + D   L+ + D ++   +  +I+L      +     I+  ++ +D      
Sbjct: 294 GVIFEHYEDGDFSFLEEIYDGIKD--EKAVIILTSGVDNR-----ILFAQNGIDDIECGK 346

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + + + K    G GGG    AQ+   N +     +   A FL++
Sbjct: 347 IFKENIKE-YNGRGGGNAKRAQAAFSNKDD----LNKFAKFLRE 385


>gi|169344498|ref|ZP_02865467.1| DHHA1 domain protein [Clostridium perfringens C str. JGS1495]
 gi|169297418|gb|EDS79527.1| DHHA1 domain protein [Clostridium perfringens C str. JGS1495]
          Length = 400

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 173/405 (42%), Gaps = 28/405 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E   L+   +L   +D++ R      H   HLL      + G++    G  +  +  
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEIS 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +    ++  E   N +I +NL V +   ++++         L  K ++ +R
Sbjct: 125 TVDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP-KTDEEIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        C G H  +T ++ ++ I           RIE + G RA S    
Sbjct: 182 IVEIVGLDLN-----ACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSDFFT 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           +DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +        +I 
Sbjct: 236 KDEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNKSERIG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            +  ++ I    D+K +  + + + ++ +   I+L  +   ++ +++   ++D+  + N 
Sbjct: 296 SITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGERVNLIFNSSKDM-KKVNM 352

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            D+ + +   L  G GGG    AQ GG N    + AI    + ++
Sbjct: 353 SDILKDTI-TLIDGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|330973620|gb|EGH73686.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 199

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 115/230 (50%), Gaps = 31/230 (13%)

Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440
           ++ G+V FKLYDT+G P+D+  DI   R L  +D   F + ++ QR RAR+ S      +
Sbjct: 1   MVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LDEAGFEREMDAQRVRARSAS------S 53

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
               + SL +   ATQF GY    GS                       + V A+ ++G+
Sbjct: 54  FGMDYNSLVKVDVATQFTGYSATTGS-----------------------ASVVALYKEGQ 90

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
            V     G++  V+ D TPFYAE+GGQ+GD+G       R  ++D  K   G F+HH +V
Sbjct: 91  SVSHLNEGEEGVVILDITPFYAESGGQIGDSGFLQAGDARFDVSDTTK-TGGAFLHHGVV 149

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
             G L     +   +  + R    +NHSATHLLH AL  +LG HV Q GS
Sbjct: 150 ASGSLSVGAQVETQVADEVRDATKLNHSATHLLHAALRQVLGEHVQQKGS 199


>gi|323702819|ref|ZP_08114478.1| Threonyl/alanyl tRNA synthetase SAD [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532207|gb|EGB22087.1| Threonyl/alanyl tRNA synthetase SAD [Desulfotomaculum nigrificans
           DSM 574]
          Length = 400

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 144/385 (37%), Gaps = 29/385 (7%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           ++       K+ V+ + T FY E GGQ  D G  +      ++  V+++ EGI    A  
Sbjct: 17  VIGSIKENGKMGVLLENTIFYPEGGGQPSDRGTMVSARRCYEVVHVEQRPEGIVHWLA-- 74

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              +     S++++ID   R+     H   H++        G      G  +  +    D
Sbjct: 75  GTSVPENGASVLMSIDADRRQDHMQQHHGQHIISAIFEQKYGWDTV--GFHLGEETSTID 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +T  K I    L+ +E+  N ++ +NLPV     +RE        ALL     D+ +V  
Sbjct: 133 LTTDK-IPLHVLQEVEEEANRVVMENLPVKIETYDREQLN----PALLKKVPPDQEKVRL 187

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V            C GTH  +TGE+  + ++    +R G  R+  I G R    +    E
Sbjct: 188 VTI---SGIDENACCGTHPRATGEVGPVKLLKTEKVR-GNTRLHFICGLRTIRWIRQTAE 243

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--------RKLQLNVEDLSCHKIA 792
            L+S+   +       + R+     E +KLQ    +           QL  + L      
Sbjct: 244 TLRSIEDAVGAVGSEAITRINNREAELKKLQKERKELLTFKYRHLADQLKEQALFIGDTY 303

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            ++       + D + ++ V     ++ Q   ++  G        V++    ++    N 
Sbjct: 304 LISV--QHFPDGDMELIRGVAAIWCEQPQRVAVLTAGT---GPFDVVMARGAEVAPAMN- 357

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQS 877
             LA     +L  G GGG   + Q 
Sbjct: 358 -QLAAQVWPILK-GKGGGSADLVQG 380


>gi|55980115|ref|YP_143412.1| alanyl-tRNA synthetase-like protein [Thermus thermophilus HB8]
 gi|55771528|dbj|BAD69969.1| alanyl-tRNA synthetase-related protein [Thermus thermophilus HB8]
          Length = 375

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 140/396 (35%), Gaps = 38/396 (9%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           VE   S +K    V  QT FY E+GGQ  D G   G    +Q+    ++ +  F     V
Sbjct: 17  VERVWSDEKGHYAVLSQTLFYPESGGQPADRGVLRGPFGEVQVLHAYEEEKA-FGDVVHV 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               +   + +   ID+  R +    H+A HLL  AL    G H       ++ D     
Sbjct: 76  LSAPIPEGVEVEGEIDWPRRFRHMQRHTAQHLLSQALLRAGGYHTV----AVSLDSPVCT 131

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V   +    A +   E   N  +  + PV    ++ E+            K   +VR+V 
Sbjct: 132 VDLEEEAEEAGVLEAEALANFAVYADYPVEAFYVSEEELARYPLRR--PPKVRGKVRLVR 189

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G    A CGGTH+ ++ +   + ++     + G  R+  + G  A      +  
Sbjct: 190 I-----GDFDLAACGGTHLKTSAQAGPIKVLKWERYKGG-TRVYFMAGWEALEDYHAKHA 243

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L  LA     +   +   + ++ +E   L+  +   +  L    L          +   
Sbjct: 244 LLARLALAFSTNPLELEKPIRKLQDELYALKGENQALREGLAEALLPRALEEKALLVPLP 303

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           +              L K++       + ++ E +   +     ++L+R  A        
Sbjct: 304 VLG-----------ELGKRLARFEGTFLLVAPEGRFVAVGPRRGEVLERLKA-------- 344

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               GG GGG+    Q   P   +A +A+A V   L
Sbjct: 345 ---LGGRGGGK-EAVQGALP-PGRAVEALARVRELL 375


>gi|168209904|ref|ZP_02635529.1| DHHA1 domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170712001|gb|EDT24183.1| DHHA1 domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 400

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 172/405 (42%), Gaps = 28/405 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHV 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E   L+   +L   +D++ R      H   HLL      + G++    G  +  +  
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEIS 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +    ++  E   N +I +NL V +   ++++         L  K ++ +R
Sbjct: 125 TVDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP-KTDEEIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D        C G H  +T ++ ++ I           RIE + G RA S    
Sbjct: 182 IVEIVGLDLN-----ACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSDFFT 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           +DE L  +   LK  +G+ +  V+ + E  + +   + K K ++    +        +I 
Sbjct: 236 KDEILGEICKLLKSGEGDTLNAVKNLLENNKNIVDENRKVKAEIGDYKIKEMLNKSERIG 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852
            +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+  + N 
Sbjct: 296 SITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM-KKVNM 352

Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            D+ + +   L  G GGG    AQ GG N    + AI    + ++
Sbjct: 353 SDILKDTI-TLIDGRGGGNQFAAQGGGKNNGNTEVAIDYATNKIR 396


>gi|183011934|gb|ACC37896.1| alanyl-tRNA synthetase [Ortalischema albitarse]
          Length = 167

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 75/162 (46%), Positives = 97/162 (59%), Gaps = 10/162 (6%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 8   EMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEF 67

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  K+W  + GL  + II  +  DNFW M E
Sbjct: 68  LTERLCLPKDRLYVTYFGGDKASGLEPDYECQKIWLDL-GLKPEHIIPGSMKDNFWEMGE 126

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQ 207
           TGPCGPCSE+ FD+           + +    +EIWNLVF+Q
Sbjct: 127 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQ 167


>gi|294992425|gb|ADF57351.1| alanyl-tRNA synthetase [Roseburia inulinivorans DSM 16841]
          Length = 190

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 79/184 (42%), Positives = 114/184 (61%), Gaps = 4/184 (2%)

Query: 183 IPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240
              G P      + +R++E+WN VF QFE   K     L + +IDTGMGLER+A V+Q+ 
Sbjct: 1   YGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVVMQDV 60

Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298
            + +DID  K +     +++G KYE +  + V+ R+I DH+RSS+F+I+DGI+P+NEGRG
Sbjct: 61  DSVFDIDTMKAIRDRVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSNEGRG 120

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           YVLRRI+RRA  + R+LG     M  L   +  E    YPEL + K  I + L  E+E+F
Sbjct: 121 YVLRRIIRRAARHGRMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQEEEKF 180

Query: 359 GKTL 362
            KT+
Sbjct: 181 AKTI 184


>gi|153810791|ref|ZP_01963459.1| hypothetical protein RUMOBE_01175 [Ruminococcus obeum ATCC 29174]
 gi|149833187|gb|EDM88269.1| hypothetical protein RUMOBE_01175 [Ruminococcus obeum ATCC 29174]
          Length = 153

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/144 (49%), Positives = 94/144 (65%), Gaps = 4/144 (2%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
           V+ +R  FL+F +  GH ++ S SL+P  D +L+  N+GM P K  FTG EKP    V+T
Sbjct: 6   VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPRTRVST 65

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123
            QKC+R G    D++NVG+T RH TFFEMLGNFSFG YFK  AI  +W+ LT+   LD  
Sbjct: 66  CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAN 121

Query: 124 RLYITVYDEDEEAFKLWKKISGLS 147
           RLY +VY +D+EAF +W K +   
Sbjct: 122 RLYPSVYQDDDEAFDIWNKRNRNP 145


>gi|283798149|ref|ZP_06347302.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Clostridium sp. M62/1]
 gi|291074129|gb|EFE11493.1| putative alanyl-tRNA synthetase domain-containing protein 1
           [Clostridium sp. M62/1]
          Length = 387

 Score =  194 bits (492), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 155/379 (40%), Gaps = 31/379 (8%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V   VSG+K  EV  D+T FY E GGQ  DTG         ++ DV +K +G  +H+   
Sbjct: 18  VTACVSGKKGFEVELDRTCFYPEGGGQPADTGVL----GTARVLDVHEK-DGTVIHYTDR 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E   L     +   ID++ R      HS  H++   + ++ G      G  +  +     
Sbjct: 73  E---LSVGEEVTGRIDWEARFSNMQQHSGEHIVSGLIHSVYGY--DNVGFHMGRE--EMT 125

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  + P++  EL  IE+  N  I  N+P+     + E+       +    + + +VR+V 
Sbjct: 126 IDLNGPMSWEELMEIEEKANRAIWANIPLKITYPSEEELEKLDYRS--KKELSGQVRIVE 183

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V   D     +  C GTHV+ TGEI ++  +S  + + G+ RI  + GQ+A      + E
Sbjct: 184 VPGVD-----TCACCGTHVAYTGEIGVIKFLSLMNYKGGV-RISMLCGQKALKACDRKTE 237

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           ++ +++  L      +V  V+   +E  + +        QL   +L      + + +  +
Sbjct: 238 QVSAVSVLLSAKPEEIVEAVKRQRDELSEEKARTVALTRQLM--ELKTASYPESDGILLV 295

Query: 801 IS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
              +    E++   + L +  +  +  + G      +  L     D+        L R  
Sbjct: 296 FEKDYTPVEVRQFCNLLMEAKRGQVTAVFGGQSGSFSYTLASPVHDMRT------LGREL 349

Query: 860 AKVLGGGGGGGRPHMAQSG 878
            + L  G GGG   M Q  
Sbjct: 350 NQSLN-GRGGGSERMVQGS 367


>gi|20807415|ref|NP_622586.1| metal-dependent hydrolase [Thermoanaerobacter tengcongensis MB4]
 gi|20515937|gb|AAM24190.1| predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Thermoanaerobacter
           tengcongensis MB4]
          Length = 418

 Score =  194 bits (492), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/412 (22%), Positives = 164/412 (39%), Gaps = 39/412 (9%)

Query: 495 IVQQGEIV---EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
            V++ E V    E   G+K  VV D+T FY E GGQ  DTG     G +  I   +KK E
Sbjct: 29  YVKEFEAVILKREEKDGEK-TVVLDRTYFYPEGGGQPSDTGKI---GSKSVIKAYEKKGE 84

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V+H + +         +   ID+  R      H+  HLL   L    G+        
Sbjct: 85  ---VYHVVED---FPEGERVHCVIDWDRRFDHMQQHTGQHLLSSVLLKKYGADTESFSIG 138

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
                +             E++     VN +I +NL V +     ++ + S        +
Sbjct: 139 ENSSHITVTKEFFTEEEIHEVE---KEVNGLIYKNLAVKSYF--ADEKLISKLPLRKKPQ 193

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             + +R+V +E  D        CGGTHV +TGEI +L I        G  R+E + G RA
Sbjct: 194 VKENIRIVEIEGIDYS-----PCGGTHVKNTGEIGILKIKKWERTNKGA-RLEFVCGFRA 247

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDL-- 786
                 ++  +  L   L   +  +   ++++ E+YR+ +       ++ L+   E+L  
Sbjct: 248 LEDYQKKNSLVNFLIQVLSEKEEGIAEHLQKLLEDYREAKREVNFLKEKILKEEAENLVK 307

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
                  ++ +  +    D ++LK +   +  + +S  + ++G  +   A +++  + D+
Sbjct: 308 KSELYGGIHIVYSLYEGRDPEDLKMLGKFVTAESKS--VAILGNKRGDVADIVVARSYDV 365

Query: 847 LDRFNAVDLARLSAKVL--GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               N         +VL    G GGG     Q GG   ++ + A+     F+
Sbjct: 366 DIVVNG-----FFKEVLRTFDGKGGGSAQFCQGGGS-PSRLELAMDKALKFV 411


>gi|254717706|ref|ZP_05179517.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261219549|ref|ZP_05933830.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|260924638|gb|EEX91206.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1]
          Length = 117

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/115 (72%), Positives = 96/115 (83%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E   Y  
Sbjct: 1   MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115
            TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI  AW+L+T
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLIT 115


>gi|187932858|ref|YP_001885945.1| dhha1 domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721011|gb|ACD22232.1| dhha1 domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 399

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 173/403 (42%), Gaps = 30/403 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E V+E   G +  +V ++T F+   GGQ  D G        +++ +V +K + +  H   
Sbjct: 19  EQVKEV--GNEFHIVLNKTAFFPGGGGQRHDLGKI----DEIEVLNVYEK-DNLIYHVLD 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   +    ++  +ID+  R     +H A H+L      +     + N   +       
Sbjct: 72  RKPSRIH---NVKCSIDWLRRLDGMNHHLAQHVLSSCFFRLF----NINTIAVHHGNEFS 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            +  S  +T  +++S E   N+II ++L V      + +  +      L    N+++R+V
Sbjct: 125 TIDFSSILTEEQVRSCEKYANNIIEKSLDVEFLTPTKRELKSMKLRRDLPDT-NEQIRIV 183

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++  D        C G H  ST ++ L+ I      + G  RIE ITG +A +  + +D
Sbjct: 184 KIDDLDLN-----ACCGVHPKSTLDLRLIKIKKYEKHKKG-SRIEFITGSKAVTDSLEKD 237

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADV 794
               S+  +L  ++   +  +E +  E + +   +    ++L+  ++        +I ++
Sbjct: 238 LFANSMCKYLNCNEKEALNGIENLNLELKNVLNENKSMSIELSNYEIKEIIEKSAQINNI 297

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
           N + ++ +    K + +++  + +K     I L+ +  + K +++   ++++    N  +
Sbjct: 298 NIIKYVYNNKTLKFVNTIVSQITEKDNK--IALIALVNDDKINLIFSCSKNI-KNVNMNE 354

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L +  A VL  G GGG   +AQ  G N    +  +    + LK
Sbjct: 355 LLKD-AIVLIDGRGGGNQTLAQGAGKNLLNLENTLDYAFNKLK 396


>gi|205374234|ref|ZP_03227033.1| alanyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 153

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 8/153 (5%)

Query: 1   MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
           M  +  + IR  +L+FFQ+ GH + PS+SL+P  DPTL++ NSG+   K  F G   P  
Sbjct: 1   MKKLTGAQIRQMYLDFFQEKGHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGSVVPDN 60

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116
             +T  QK +R     ND++NVG+T RHHTFFEMLGNFS G YFK+ AI  AW+ LT  K
Sbjct: 61  PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDWAWEFLTSEK 116

Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149
               D  +L +TV+ ED EA+ +WK   G+   
Sbjct: 117 WIGFDPEKLSVTVHPEDHEAYDMWKNDIGVPES 149


>gi|183011930|gb|ACC37894.1| alanyl-tRNA synthetase [Microsepsis furcata]
          Length = 166

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 93/168 (55%), Gaps = 15/168 (8%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G  +P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTAEPNSEMAKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197
            I+     DNFW M ETGPCGPCSE+ FD+           + +    
Sbjct: 120 HILPGXMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDV 166


>gi|297583294|ref|YP_003699074.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus selenitireducens
           MLS10]
 gi|297141751|gb|ADH98508.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus selenitireducens
           MLS10]
          Length = 407

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 101/403 (25%), Positives = 158/403 (39%), Gaps = 34/403 (8%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-L 565
            G  V +VFDQT FY E GGQ  D G   G    L +TDVQ   +G   H  +VERG+ +
Sbjct: 26  EGGTVYLVFDQTWFYPEGGGQPADKGSISG----LPVTDVQ-LEDGEIRH--MVERGVEV 78

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++   +D+  R      H A HLL   L     +        +  +    +VT   
Sbjct: 79  NVGDTVHCKLDWNRRLDYMQQHHAQHLLSAVLDDQFDAPTVS--VHLGSEECAIEVTWDD 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                 L+++ D VN  I +N  + T  + RE+A             +  VR+V VE  D
Sbjct: 137 LTEREVLEAV-DQVNTWIRENHLINTTNVTREEADRYPLRKT--PAVSGDVRLVIVEGID 193

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTH   TGE+ L+++      R G+ RI  + G RA + L          
Sbjct: 194 YN-----PCGGTHPLRTGEVQLVHLTGMERARGGL-RITYLAGGRAVARLRQFQRITDEA 247

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN----FMSHII 801
           +  L      +   + +  + +++L       K QL  +  +      VN     +  I 
Sbjct: 248 SRLLNSPPEGITDTLHKQIDAHQRLDKEMRSLKEQLLEQLFADWLKGAVNTKEAMVPFIK 307

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA----SVLIVVTEDLLDRFNAVDLAR 857
            +   KEL+ +     + +    ++   +SK+         ++    D       VDL R
Sbjct: 308 EDFGMKELQKLSAKAVQALPDRPVLFATVSKDDNGDSHLEFVLAAGRD-----CGVDLKR 362

Query: 858 LSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +   V  L  G GGG P   Q GG      +   + V+  LK+
Sbjct: 363 VEKDVFALIQGKGGGSPKKLQGGGKADLSLEAFKSRVSDILKQ 405


>gi|254520162|ref|ZP_05132218.1| threonyl/alanyl tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226913911|gb|EEH99112.1| threonyl/alanyl tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 399

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 159/408 (38%), Gaps = 31/408 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +I+       K  +  D+T F+   GGQ  D G   G    + + DV ++   I+   
Sbjct: 15  EAKIIYVKKIDDKFHIALDKTAFFPGGGGQCCDIGELNG----INVLDVYEENREIYH-- 68

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             V    +     +   ID+  R      H A H+L      +   +             
Sbjct: 69  --VVSQDISDSTIVKGKIDWDRREDGMHQHLAQHVLSGCFFKLFNCNTVSIHLGKDI--- 123

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
              V     +T  +++  E   N II +N+ V + +   ++         L     + +R
Sbjct: 124 -STVDIIGNLTEEKIRKAEKMANYIIRENILVESFVPTEKELENMNLRRDLPNT-EEEIR 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +     G      C G H   T ++ L+ I           RIE ++G+RA    + 
Sbjct: 182 VVKI-----GDLDINACCGVHPKRTLDLKLIKIKKYEK-NKNNTRIEFLSGERAVKDSLY 235

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIA 792
           +D+ LK + ++L  ++   +  ++ +      L     K + +L   ++     +  K  
Sbjct: 236 KDKMLKDICNYLSSNEEEALNSIKNLKSNIDALSNEKRKLEEELINYEIENILSNSSKEN 295

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG--ISKEKKASVLIVVTEDLLDRF 850
           D+  ++ I +E     ++ + + +  +  S II L     +   K ++L   ++DL ++ 
Sbjct: 296 DLTIITKIFNERSIDYIRKLANKIGDR--SNIICLFATINNNNNKTNILFSCSKDL-EQV 352

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           N   L + S K +  G GGG   +AQ  G N    ++ +  + + +K+
Sbjct: 353 NMGKLLKESIKEIN-GKGGGSKILAQGSGENIE-IEKYLNNIKNKIKE 398


>gi|295091706|emb|CBK77813.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Clostridium cf. saccharolyticum
           K10]
          Length = 387

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 155/379 (40%), Gaps = 31/379 (8%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V   VSG+K  EV  D+T FY E GGQ  DTG         ++ DV +K +G  +H+   
Sbjct: 18  VTACVSGKKGFEVELDRTCFYPEGGGQPADTGVL----GTARVLDVHEK-DGTVIHYTDR 72

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E   L     +   ID++ R      HS  H++   + ++ G      G  +  +     
Sbjct: 73  E---LSVGEEVTGRIDWEARFSNMQQHSGEHIVSGLIHSVYGY--DNVGFHMGRE--ETT 125

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  + P++  EL  IE+  N  +  N+P+     + E+       +    + + +VR+V 
Sbjct: 126 IDLNGPMSWEELMEIEEKANRAVWANIPLKITYPSEEELEKLDYRS--KKELSGQVRIVE 183

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V   D     +  C GTHV+ TGEI ++  +S  + + G+ RI  + GQ+A      + E
Sbjct: 184 VPGVD-----TCACCGTHVAYTGEIGVIKFLSLMNYKGGV-RISMLCGQKALKACDRKTE 237

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           ++ +++  L      +V  V+   +E  + +        QL   +L      + + +  +
Sbjct: 238 QVSAVSVLLSAKPEEIVEAVKRQRDELSEEKARTVALTRQLM--ELKTASYPESDGILLV 295

Query: 801 IS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
              +    E++   + L +  +  +  + G      +  L     D+        L R  
Sbjct: 296 FEKDYTPVEVRQFCNLLMEAKRGQVTAVFGGQSGSFSYTLASPVHDMRT------LGREL 349

Query: 860 AKVLGGGGGGGRPHMAQSG 878
            + L  G GGG   M Q  
Sbjct: 350 NQSLN-GRGGGSERMVQGS 367


>gi|183011960|gb|ACC37909.1| alanyl-tRNA synthetase [Sepsis lateralis]
          Length = 159

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 90/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+     DNFW M ETGPCGPCSE+ FD+
Sbjct: 123 HILPGNMKDNFWEMGETGPCGPCSELHFDR 152


>gi|322368847|ref|ZP_08043414.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320551578|gb|EFW93225.1| alanyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 396

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 154/387 (39%), Gaps = 29/387 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
               +     V   +T FYAE+GGQ  D G   G    + + DVQK+   +   H +   
Sbjct: 15  ATVAAIDGRNVSLSETYFYAESGGQPADRGTLGG----ISVVDVQKRDGDVV--HTLETD 68

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                   +   +D + R     +H+A+H+L+ A   IL   +   G  I  + +R D  
Sbjct: 69  PEFEEGEEIRGQVDEEFRTYCMRSHTASHVLYGAGRLIL-DDLGYGGFDIGEEKIRVDFQ 127

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-------YNDR 675
            S  I    L  +E   N  +  +LPV    + +E+A+A    A   TK        ++ 
Sbjct: 128 TSTDIDDDVLVELERLTNRAVWDSLPVSWEAVPKEEALAREDIA-FNTKTEEGVLSGSET 186

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRVV +E  D      A CGGTHV +T EI  + IV  S+   G+ R+E   G  A    
Sbjct: 187 VRVVDIEGWD-----VAACGGTHVENTREIGPVTIVDRSNPGEGMTRVEFAVGPPAIRTR 241

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIAD 793
             +     + A        ++   ++ +  E   L  +L  AK +L     D    +   
Sbjct: 242 ADEKRSALAAARIAGTGVEDLPDEIDRLTGEIDALETELADAKSRLVGATIDELAEETVA 301

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
            N    ++  +D      + D +++       ++    KE    +++    D+     A 
Sbjct: 302 RNGHEWLVGTIDGVGPNELSDRVRELAGETADVVALTGKEGSTFLVVGTDGDVE----AG 357

Query: 854 DLARLS-AKVLGGGGGGGRPHMAQSGG 879
           D+     A+  GGGG  G P  AQ GG
Sbjct: 358 DVVDEVTAEFGGGGG--GSPTFAQGGG 382


>gi|183011952|gb|ACC37905.1| alanyl-tRNA synthetase [Sepsis duplicata]
          Length = 165

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 71/165 (43%), Positives = 93/165 (56%), Gaps = 15/165 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 3   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 62

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 63  FGDYFKKEICSWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 121

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEG 194
            I+  +  DNFW M ETGPCGPCSE+ FD+           + + 
Sbjct: 122 HILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDD 165


>gi|299561726|gb|ADJ36935.1| alanyl-tRNA synthetase [Physocephala marginata]
          Length = 167

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 97/169 (57%), Gaps = 15/169 (8%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+
Sbjct: 1   FLGTVDPNSEMAKWVRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKK 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITT 156
              + AW+ LT    L +  LY+T +  DE        E  +LW  I G+  D I+  + 
Sbjct: 61  EICKWAWEFLTDNLQLSKENLYVTYFGGDEKNNLEADIECKQLWLDI-GVIPDHIVPGSL 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
            DNFW M +TGPCGPCSEI FD+           +++    +EIWNLVF
Sbjct: 120 KDNFWEMGDTGPCGPCSEIHFDRIGG-RSVPELVNKDDPDVLEIWNLVF 167


>gi|282164144|ref|YP_003356529.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
 gi|282156458|dbj|BAI61546.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
          Length = 402

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 149/390 (38%), Gaps = 30/390 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V VV  +T FY   GGQ  D G   G    + + DV ++       H +   G      +
Sbjct: 37  VRVVLSETAFYPGGGGQPSDRGTIDG----IPVDDVIEQDG-----HVVHVLGKAPANKT 87

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+  R  L   HS  HLL   L  +     S     +        +  + P   A
Sbjct: 88  VSCIIDFDRRFDLMQQHSGQHLLSAVLFKLYQCKTSSLHMGMDE----LSIDVAMPDMPA 143

Query: 631 E-LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           + L ++E+ VN  I ++LPVV  ++  E A           +    VR+V +   D    
Sbjct: 144 QMLMTVEEEVNAYIYKDLPVVISVVTPEVASEMTLRKTPPKE--GEVRIVEITSIDRS-- 199

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               C GTHV  TGEI ++ IV      A   R+    G+RA      + + +  L    
Sbjct: 200 ---PCCGTHVRRTGEIGIIKIVKTEKRGA-ETRVYFKCGKRALKDYQFKQDIVTGLVHLY 255

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSCHKIADVNFMSHIISEVDSKE 808
           ++S+G+V+ + E +  + R  Q    + K + L VE       A    +     +    +
Sbjct: 256 RMSEGDVLAKTEALAAQLRNTQKELTEIKDKMLRVEAKEISASATSKVIDRSYGDKSFAD 315

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
           + ++   L +  +   ++++    +K+         D     +   + + +  V   G G
Sbjct: 316 IGTLAKYLLESGE--FVVILASVPDKRLLFAHSGKFD----ISCGKMLKEN-LVSFNGKG 368

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GG+ + A  G       ++  A +   L K
Sbjct: 369 GGKDNWANGGFSTLEDMERFKAFLKDALAK 398


>gi|183011966|gb|ACC37912.1| alanyl-tRNA synthetase [Sepsis punctum]
          Length = 159

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 91/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 1   MNQFKPVFLGTADPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 60

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 61  FGDYFKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPE 119

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+  +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 HILPGSMKDNFWEMGETGPCGPCSELHFDR 149


>gi|323691798|ref|ZP_08106055.1| hypothetical protein HMPREF9475_00917 [Clostridium symbiosum
           WAL-14673]
 gi|323504164|gb|EGB19969.1| hypothetical protein HMPREF9475_00917 [Clostridium symbiosum
           WAL-14673]
          Length = 384

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 91/408 (22%), Positives = 153/408 (37%), Gaps = 56/408 (13%)

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
              +   +  I Q    V     G+K  EV+ D+T FY E GGQ  DTG         ++
Sbjct: 1   MEKLYYRIPYIRQFEAKVVSCEKGKKGFEVILDRTAFYPEGGGQPSDTGTL----GTARV 56

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS----- 598
            DV ++ E +  +        L+   ++  TID+ NR      HS  H++   +      
Sbjct: 57  LDVHERGEEVIHY----TEQELQEGQTVTGTIDWDNRFSNMQQHSGEHIVSGLIHGRYGY 112

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G H+      I  +G+         +T  EL  IE   N+I+  N  +     + E+
Sbjct: 113 DNVGFHMGHEEMTIDLNGI---------LTWEELMEIEKEANEIVFANRQIKATYPSEEE 163

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  +    + + RVR+V V   D        C GTHV  TGEI  +  +S    + 
Sbjct: 164 LQKLDYRS--KKELSGRVRIVEVPGAD-----CCACCGTHVEYTGEIGAVKFLSMIHYKG 216

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ RI  + G +A      + ++  ++++ L      +   VE +  E    +       
Sbjct: 217 GV-RISMLCGAKAMEDYRRKTDQTAAISNLLSAKPDRLKEAVERLKNE--AAEKDARIGA 273

Query: 779 LQLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           L   + +L   +  A    +    + + + +++   D L +                KA 
Sbjct: 274 LTRELLNLKVKQYEAGQKLLLVFETGMTALQIRQFCDRLLE--------------GGKAE 319

Query: 838 VLIVVTEDLLDRFN--AVD---LARLSAKVLGG---GGGGGRPHMAQS 877
              V +ED  D F+  A       R + K L G   G GGG   M Q 
Sbjct: 320 TAAVFSEDAKDGFHYCAGSRSFDMRQAGKTLNGKLNGRGGGSAQMIQG 367


>gi|154504605|ref|ZP_02041343.1| hypothetical protein RUMGNA_02111 [Ruminococcus gnavus ATCC 29149]
 gi|153795087|gb|EDN77507.1| hypothetical protein RUMGNA_02111 [Ruminococcus gnavus ATCC 29149]
          Length = 389

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 151/382 (39%), Gaps = 32/382 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            ++ +    G+  ++V D+T F+ E GGQ  DTG         ++ DVQ+K +G+  H  
Sbjct: 17  AQVEQCVPDGENWQIVLDRTAFFPEGGGQYADTGIL----GSARVLDVQEK-DGVIFHR- 70

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     +   ID+  R      H+  H++   +    G      G  +  +   
Sbjct: 71  --TDAPLSVGDCVEGRIDWDLRFMKMQQHTGEHIVSGLVHKRFGY--QNVGFHLGSEDCT 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D   +  IT  E++ IE   N  + +NL V     +++        + +  +   +VR+
Sbjct: 127 MDF--NGEITKEEIREIEWEANRAVVRNLEVEVTYPDQKALQTLVYRSKI--EIEGQVRI 182

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V++       +    C   HV  TGEI  + +      + G+ R+  + G RA      +
Sbjct: 183 VTIP-----EYDVCACCAPHVKQTGEIGQIRLTGVQRYKGGV-RVTMLCGFRALEDYRRK 236

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV--EDLSCHKIADVNF 796
            E    ++S L V + +V   VE++  +  + +  +A+ K  +     +    +  DV  
Sbjct: 237 AESTGCISSALCVKEEDVAQGVEKLKNDCTEWKQRYAQLKRDMLAIRAERLAGQSEDVIV 296

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
            +    +++ +EL+ +M+ +    +       G  +     V+     D+        LA
Sbjct: 297 FA---DDLEGEELRILMNLVLDHGKRICAAFGGDEEHGFRYVIGSRILDMRP------LA 347

Query: 857 RLSAKVLGGGGGGGRPHMAQSG 878
           +   +    G GGG+P M Q  
Sbjct: 348 KELNETFH-GRGGGKPEMVQGS 368


>gi|300214774|gb|ADJ79190.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 214

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 8/214 (3%)

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK- 750
             CGGTHV +T EI L  IVSES + AG+RRIEA+T + A   L  +++ L+  A  LK 
Sbjct: 2   EFCGGTHVDNTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKI 61

Query: 751 VSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--- 805
           V    V  ++E++ E+ +  + Q    + K            + ++N  + I  +V+   
Sbjct: 62  VQIKEVPRKIEQLQEQVKLLEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSG 121

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLG 864
             +L+ + D  ++K  S +++L   + + K +++  ++ D +   + A DL +  A  +G
Sbjct: 122 MSQLRQLADQWKEKQLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVG 181

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           GGGG GRP +AQ+GG       +A+     +L K
Sbjct: 182 GGGG-GRPDLAQAGGKKPEGIQEALKAAEDWLSK 214


>gi|168204578|ref|ZP_02630583.1| DHHA1 domain protein [Clostridium perfringens E str. JGS1987]
 gi|170663792|gb|EDT16475.1| DHHA1 domain protein [Clostridium perfringens E str. JGS1987]
          Length = 400

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 89/410 (21%), Positives = 170/410 (41%), Gaps = 38/410 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++ EG   H 
Sbjct: 15  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHI 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-----SHVSQNGSCI 612
              E   L+   +L   +D++ R      H   HLL      + G      H+ +  S +
Sbjct: 70  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCSFHLGKEISTV 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              G          +    ++  E   N +I +NL V +   ++++         L  K 
Sbjct: 127 DIVGF---------LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP-KT 176

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           ++ +R+V +   D        C G H  +T ++ ++ I           RIE + G RA 
Sbjct: 177 DEEIRIVEIVGLDLN-----ACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAV 230

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----S 787
           S    +DE L  +   LK  +G+ +  V+ + E  + L   + K K ++    +      
Sbjct: 231 SDFFTKDEILGEICKLLKSGEGDTLNAVKNLLENNKNLVDENRKVKAEIGDYKIKEMLNK 290

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +I  +  ++ I    D+K +  + + + ++ +   I+L  +    + +++   ++D+ 
Sbjct: 291 SERIGSITLVNEIFDGEDTKHIGKLANKITEEYE--AIVLFAVKNGDRVNLIFNSSKDM- 347

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
            + N  D+ + +   L  G GGG    AQ  G N    + AI    + ++
Sbjct: 348 KKVNMSDILKDTI-TLIDGRGGGNQFAAQGRGKNNGNTEVAIDYATNKIR 396


>gi|225572851|ref|ZP_03781606.1| hypothetical protein RUMHYD_01042 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039777|gb|EEG50023.1| hypothetical protein RUMHYD_01042 [Blautia hydrogenotrophica DSM
           10507]
          Length = 384

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 145/379 (38%), Gaps = 29/379 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            ++V+     +  EV  DQT FY E GGQ  DTG       + ++ +V  K   ++    
Sbjct: 18  AKVVQCRPGKKGYEVALDQTAFYPEGGGQPYDTGTL----GKAKVLEVHSKDGEVWHD-- 71

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     +   ID+  R  L   HS  HL+   +    G      G  +  D + 
Sbjct: 72  --TDCPLEVGSQVEGNIDWDRRFDLMQQHSGEHLVSGLIHEKYGY--DNVGFHMGTDRIT 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D   +  +   +L  +E+ +N++I +N+         E+       +    + +  VR+
Sbjct: 128 IDF--NGIVPEEDLPKLEEKINEVIWENIQTRVLYPTEEELKQLCYRS--KKELSGWVRL 183

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V     D        C G HV+ TGEI ++ ++S    R G+ R+E I+G+R   +L   
Sbjct: 184 VEFPGTDL-----CACCGLHVTYTGEIGMVKLLSVQKFREGV-RMEMISGKRVLDYLNEI 237

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            E+   ++  L    G     V  + EE  +L+      + +   ++      A    + 
Sbjct: 238 SEQNHQISVQLSAKPGETAAAVRRLAEENFRLRGRVMDMEAEAFEQEARRRLAAG--DVL 295

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
                +++  ++ +  A+ +  Q    +    S     S    + E      +  +L R 
Sbjct: 296 LFEKGMEADSVRRLATAVMETCQGRCAVY---SDSGDGSFKYAIGE---KGGDLRELVRQ 349

Query: 859 SAKVLGGGGGGGRPHMAQS 877
             + L  G GGG+P   Q 
Sbjct: 350 MNQALN-GRGGGKPFFVQG 367


>gi|291563576|emb|CBL42392.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [butyrate-producing bacterium
           SS3/4]
          Length = 389

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 40/383 (10%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V     G+K   V  DQT FY E GGQ  DTG  +G      + DV+    G  VH+   
Sbjct: 18  VLSCEKGKKGYEVALDQTAFYPEGGGQPYDTG-ILGGAHVTAVHDVK----GEIVHY--- 69

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    ++   I++  R Q    HS  HL+   +    G      G  +  + +  D
Sbjct: 70  TDAPLAVGETVTGEINWDRRFQNMQGHSGEHLVSGLIHAKYGY--DNVGFHMGTEEITID 127

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +  +  +   +L  IE   N II ++  +     + E+       +    +    +R+VS
Sbjct: 128 L--NGLLEWEDLMEIEKKANRIIWEDREIYAGFPSAEELAHMDYRS--KKELTGAIRIVS 183

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D     +  C GTHV +TGEI L+  ++    + G+ RI  + G+ A      + E
Sbjct: 184 IPGGD-----TCACCGTHVKTTGEIGLVKFLTMIHYKGGV-RISLLCGEAAVMDYEKKRE 237

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNVEDLSCHKIADVNF-MS 798
           +L+ ++  L    G     VE++  E   L +  AK  ++   +  +   ++   N  + 
Sbjct: 238 ELQKISVLLSAKAGKTADAVEKVKNE---LTMTQAKCSEMSRKLMKIYADQLNGGNSKIC 294

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLAR 857
            I   +D  EL+  ++   +  + GI++ +  S     S ++   +ED+          R
Sbjct: 295 WIEDGLDMTELRHFVNFALEGKKGGIVLALSESVNGGFSYVLGSQSEDM----------R 344

Query: 858 LSAKVLGG---GGGGGRPHMAQS 877
             +K L G   G GGG   MAQ 
Sbjct: 345 ALSKELNGELSGRGGGSSQMAQG 367


>gi|183011902|gb|ACC37880.1| alanyl-tRNA synthetase [Decachaetophora aeneipes]
          Length = 158

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 91/150 (60%), Gaps = 14/150 (9%)

Query: 43  MVPFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97
           M  FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+S
Sbjct: 4   MNQFKPVFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWS 63

Query: 98  FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149
           FG YFK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  +
Sbjct: 64  FGDYFKKEICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQMWTDL-GLKPE 122

Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179
            I+  +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 123 HILPGSMKDNFWEMGETGPCGPCSELHFDR 152


>gi|320528734|ref|ZP_08029886.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
 gi|320130944|gb|EFW23522.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
          Length = 391

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 153/386 (39%), Gaps = 32/386 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E+V   T FY E GGQ  D G   G    +++  VQ++ E I      + +  L    +
Sbjct: 31  YELVLKDTIFYPEGGGQPCDKGTIQG----VEVIAVQREKERIVH----ITKQPLAPGEN 82

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID++ R  L  NH+  H+    +  + G   S  G  +           +  +T  
Sbjct: 83  VHCEIDWEYRFDLMQNHTGEHIFSGVVKQLYGY--SNVGFHMGE---YICADFNGNLTEE 137

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            ++ +E  VN  I  NL V   + +  +       + +  +     R++S++      + 
Sbjct: 138 NIEEVERRVNQAIWMNLCVQEILCSPSETAKYDYRSKISIE--GTTRIISIDG-----YD 190

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C G HV +TGEI +  +++    R    R+  ++G+RA ++L    ++  S++  L 
Sbjct: 191 MCACCGMHVKNTGEIGICKVINFEKSR-NKTRVFLLSGRRAFAYLSHIHQENSSISKLLS 249

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
                +   V  + + Y  +Q  +    +++ ++D     I D    + +++  DS+ ++
Sbjct: 250 AKPLEISTAVSHLQQRYVDVQKAYRTVLMEMMMKDADQIPIQDAIIYTSVLA--DSEGMR 307

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
           +  +   +   S  +M++  ++   A V++  T DLL         R          GGG
Sbjct: 308 AFCNRCIEMGIST-VMVIAKTEVGYAYVIMSHTIDLLS-------IRAEFNAAIHAKGGG 359

Query: 871 RPHMAQSGGPN-GNKADQAIAGVASF 895
              M Q        +   A   V   
Sbjct: 360 NHEMMQGSCTAGPTEISIAFHAVTGI 385


>gi|331085926|ref|ZP_08335009.1| hypothetical protein HMPREF0987_01312 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406849|gb|EGG86354.1| hypothetical protein HMPREF0987_01312 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 326

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 147/353 (41%), Gaps = 35/353 (9%)

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             +   +   S   AIVQ     E   SG   E++ D+T F+ E GGQ  DTG   G   
Sbjct: 3   EKLFYQDSHRSTFTAIVQ-----EVRPSGNGYEIILDRTAFFPEGGGQSSDTGSLGG--- 54

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + ++DVQ+  +G  +H+     G L     +   ID+  R      H+  H++   +  
Sbjct: 55  -VSVSDVQE-IDGKIIHY---TDGPLVEGTEVEGCIDWTERFSKMQQHTGEHIVSGLIHK 109

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I G H    G  +  D +  D     P    +L  IE   N+ +A+NLPV       E+ 
Sbjct: 110 IYGYH--NVGFHLGTDSVTLDFNGGVP--KEKLHEIEQLANEAVAKNLPVQVLYPTDEEL 165

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 + +  +   +VR+V ++      +    C   HV  TGEI L+ +V   + + G
Sbjct: 166 SKISYRSKI--EIEGQVRIVVIDG-----YDVCACCAPHVKQTGEIGLIKLVGMQNYKGG 218

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKR 777
           + RI  + G RA      +++  + +A  L   +      VE + EE   +K ++   +R
Sbjct: 219 V-RISMLCGFRALEDYYQKEKNNREIAVMLSAKEYETAVEVERLQEELAMKKAKIAELER 277

Query: 778 K-LQLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           K L+  VE L      D++  +  +  E D    + +++ L KK       L 
Sbjct: 278 KFLEQKVETL------DISGEIVCLFEETDPVMTRELVNLLLKKRSKDGSCLF 324


>gi|325662129|ref|ZP_08150747.1| hypothetical protein HMPREF0490_01485 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471578|gb|EGC74798.1| hypothetical protein HMPREF0490_01485 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 326

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 147/353 (41%), Gaps = 35/353 (9%)

Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
             +   +   S   AIVQ     E   SG   E++ D+T F+ E GGQ  DTG   G   
Sbjct: 3   EKLFYQDSHRSTFTAIVQ-----EVRPSGNGYEIILDRTAFFPEGGGQSSDTGSLGG--- 54

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + ++DVQ+  +G  +H+     G L     +   ID+  R      H+  H++   +  
Sbjct: 55  -VSVSDVQE-IDGKIIHY---TDGPLVEGAEVEGCIDWTERFSKMQQHTGEHIVSGLIHK 109

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           I G H    G  +  D +  D     P    +L  IE   N+ +A+NLPV       E+ 
Sbjct: 110 IYGYH--NVGFHLGTDSVTLDFNGVVP--KEKLHEIEQLANEAVAKNLPVQVLYPTDEEL 165

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 + +  +   +VR+V ++      +    C   HV  TGEI L+ +V   + + G
Sbjct: 166 SKISYRSKI--EIEGQVRIVVIDG-----YDVCACCAPHVKQTGEIGLIKLVGMQNYKGG 218

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKR 777
           + RI  + G RA      +++  + +A  L   +      VE + EE   +K ++   ++
Sbjct: 219 V-RISMLCGFRALEDYYQKEKNNREIAVMLSAKEYETAVEVERLQEELAMKKAKIAELEQ 277

Query: 778 K-LQLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           K L+  VE L      DV+  +  +  E D    + +++ L KK       L 
Sbjct: 278 KFLEQKVETL------DVSGEIVCLFEETDPVMTRELVNLLLKKRSKDGSCLF 324


>gi|227824520|ref|ZP_03989352.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905019|gb|EEH90937.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 402

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 150/396 (37%), Gaps = 38/396 (9%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G   E+V D T  + E GGQL D G        + +    +  + +           L  
Sbjct: 26  GDHFEIVLDGTVIFPEGGGQLSDQGWI----DDIPVYYAAESGDDVRH----FTHKALPV 77

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + + +D+  R      H   H+L +A     G+  +  G  +  + +  D+   K +
Sbjct: 78  GEKVTVRLDWDVRLDRMQQHCGEHMLSYAFWKTCGA--NNVGFHMNEESVFIDL--DKEV 133

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
               +K  E + N  + +N P+    +   +    G       K    VR+V ++  D  
Sbjct: 134 DEKTVKEAELSANAAVWENHPITLHYVPYTELGKYGLRK-KNDKLRGIVRLVDIKEGD-- 190

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
              +  C GTH   TG + L+ ++  +  + G  RIE + G+RA   +  +   L+  ++
Sbjct: 191 ---TCTCCGTHPPFTGMVGLIKVIRFNRYKGG-SRIEFLCGKRAVEAIHERSRILEETSN 246

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHII 801
            L V    V+  VE++ +E   L+    +R   L   +L           +   F+  + 
Sbjct: 247 LLSVKSEEVLPAVEKLHQEVLDLKASLRERTQDLFQAELPALLEKAPLLASGTRFVFVLT 306

Query: 802 SEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
                D K L  ++   ++KI + +I+        K       T+   +R    DL  ++
Sbjct: 307 EGTPRDGKSLMKLLTG-KEKILAALIL----KNGDKVMYQFAATKGAEER--CRDLCTMA 359

Query: 860 AKVLGGGGGGGRPHMAQSG---GPNGNKADQAIAGV 892
             V   G GGG P  +Q G   G +     +A+   
Sbjct: 360 GNVFH-GRGGGSPTSSQGGGIAGSDWKAQAKALEKA 394


>gi|323484730|ref|ZP_08090089.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14163]
 gi|323401967|gb|EGA94306.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14163]
          Length = 384

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/408 (22%), Positives = 151/408 (37%), Gaps = 56/408 (13%)

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
              +   +  I Q    V     G+K  EV+ D+T FY E GGQ  DTG         ++
Sbjct: 1   MEKLYYRIPYIRQFEAKVVSCEKGKKGFEVILDRTAFYPEGGGQPSDTGTL----GIARV 56

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS----- 598
            DV ++ E +  +        L+   ++   ID+ NR      HS  H++   +      
Sbjct: 57  LDVHERGEEVIHY----TDQELQEGQTVTGAIDWDNRFSNMQQHSGEHIVSGLIHGRYGY 112

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +G H+      I  +G+         +T  EL  IE   N+I+  N  +     + E+
Sbjct: 113 DNVGFHMGHEEMTIDLNGI---------LTWEELMEIEKEANEIVFANRQIKATYPSEEE 163

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  +    + + RVR+V V   D        C GTHV  TGEI  +  +S    + 
Sbjct: 164 LQKLDYRS--KKELSGRVRIVEVPGAD-----CCACCGTHVEYTGEIGAVKFLSMIHYKG 216

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ RI  + G +A      + ++  ++++ L      +   VE +  E    +       
Sbjct: 217 GV-RISMLCGAKAMEDYRRKTDQTAAISNLLSAKPDRLKEAVERLKNE--AAEKDARIGA 273

Query: 779 LQLNVEDLSCHKI-ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           L   + +L   +  A    +    + + + +++   D L +                KA 
Sbjct: 274 LTRELLNLKVKQYEAGQKLLFVFETGMTALQIRQFCDRLLE--------------GGKAE 319

Query: 838 VLIVVTEDLLDRFN--AVD---LARLSAKVLGG---GGGGGRPHMAQS 877
              V +ED    FN  A       R + K L G   G GGG   M Q 
Sbjct: 320 TAAVFSEDAKGGFNYCAGSRSFDMRQAGKTLNGKLNGRGGGSAQMIQG 367


>gi|183011938|gb|ACC37898.1| alanyl-tRNA synthetase [Paratoxopoda amonane]
          Length = 151

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 92/153 (60%), Gaps = 10/153 (6%)

Query: 60  AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119
            V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+   
Sbjct: 1   RVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTERLC 60

Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171
           L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGPCGP
Sbjct: 61  LPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGETGPCGP 119

Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLV 204
           CSE+ FD+           + +    +EIWNLV
Sbjct: 120 CSELHFDRIGG-RSVPELVNMDDPDVLEIWNLV 151


>gi|326790117|ref|YP_004307938.1| Alanyl-tRNA synthetase, class IIc [Clostridium lentocellum DSM
           5427]
 gi|326540881|gb|ADZ82740.1| Alanyl-tRNA synthetase, class IIc [Clostridium lentocellum DSM
           5427]
          Length = 382

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 31/379 (8%)

Query: 502 VEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           V     G+K   VV DQT FY E GGQ  D G   G    +++ DV+ K + +  H    
Sbjct: 19  VLSCNEGKKGYEVVLDQTAFYPEGGGQPSDEGILGG----VKVKDVRIK-DHVIYHIV-- 71

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    S+   ID+  R  +   HS  H++   ++   G   +  G  ++ + +  D
Sbjct: 72  -ECPLEVGSSVEGKIDFDKRFDMMQQHSGEHIISGLINKYYGY--NNVGFHLSRENMTAD 128

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V     +TS ++  IE   N+ I +N+PV   I  +E+       + +  + N+ VR+V+
Sbjct: 129 V--DGELTSEQVSEIEYLANEAIYKNIPVQGAIYGQEEVREMTYRSKI--ELNEDVRLVT 184

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +       + +  C GTHV  TGEI ++  +S    R G  R+    G+RA      + E
Sbjct: 185 IPG-----YDTCACCGTHVKYTGEIGMIKFISSERHRGG-TRLTLACGKRALKDYSKKQE 238

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            + S  + L      +   ++++ EE+ + +   A+ K  L    +  +   +   +   
Sbjct: 239 IVSSAMAILSAKPEMITSHLQKLQEEFNETKFKLAEVKGILFSYMVEEYIKCNQATLCIC 298

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLS 859
              +  +EL+ +   L +K+    +++   +   K ++    ++ D+     A+++    
Sbjct: 299 EEGLVPEELRKLCTLLIQKVDKTCLVVTPDATGFKYAL--GNSKIDIRPLCKAMNMK--- 353

Query: 860 AKVLGGGGGGGRPHMAQSG 878
                 G GGG   + Q  
Sbjct: 354 ----FQGKGGGSSELCQGS 368


>gi|253580472|ref|ZP_04857737.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848202|gb|EES76167.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 390

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 166/410 (40%), Gaps = 34/410 (8%)

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
           MK++R+++ +   +   +       A V     VE     +   V+ D++ FY E GGQ 
Sbjct: 1   MKKERQIMTETRRLYYEDVYKKEFTATV-----VECREQKKGYAVILDESAFYPEGGGQP 55

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            D G         ++T+V +K +G  +H+       L     +   ID+  R  L   HS
Sbjct: 56  SDVGTL----GDAKVTEVHEK-DGELLHY---TDKALEVGAKVEGKIDWVRRFDLMQQHS 107

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
             H++   +    G      G  +  D +  D+  +  +  ++L  IE  VN+ + ++  
Sbjct: 108 GEHMVSGIIHEKYGY--DNVGFHMGSDVITVDL--NGMLDDSQLAEIEREVNERVWEDRE 163

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           VV    + E+       +    +   +VR+V+    D        C GTHV+ TGEI ++
Sbjct: 164 VVITYPDAEELKTIDYRS--KKELTGQVRIVTFPGVD-----VCACCGTHVTHTGEIGMV 216

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            ++S      GI R+E I G+R   +L   +E+   ++  L          V+ + +E  
Sbjct: 217 KLLSVVKFHDGI-RMEMICGKRVLDYLNMVNEQNHQISMKLSAKMDRTADAVQRLQDENF 275

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           +++   A+ + ++   +    + A    +      +++  ++ + DA+    + G   + 
Sbjct: 276 RMKGQVARMEEEMFRAEAKKWEGAGSVLIFK--EGLEADSVRKLADAVMNTCE-GCCAVF 332

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
             +++      +   +  L ++      +     L  G GGG+P   Q  
Sbjct: 333 SRNEDGSYKYAMGEIDGDLRQYT-----KEMNAALN-GRGGGKPFFVQGS 376


>gi|291294611|ref|YP_003506009.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus ruber DSM 1279]
 gi|290469570|gb|ADD26989.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus ruber DSM 1279]
          Length = 390

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 140/372 (37%), Gaps = 23/372 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + ++V     G K   V DQT FY  +GGQ  DTG   G    L++ +  K A G  +H 
Sbjct: 14  EAQVVRAWSEGGKHFAVLDQTLFYPTSGGQACDTGHL-GGVAVLEVLEDAK-ATGPVIHR 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L     +V  +D+  R +    H+A H+L  A     G +V      +     
Sbjct: 72  ---LESPLLEGQRVVGQLDWARRYRHMQRHTAEHMLGQAFLRAAGWNVV----AVNMSNP 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
              +    P   A ++  E   N  +  N  V T  +N  +A A G       K    +R
Sbjct: 125 VCTMDFDGPPDEAVIRQAEALANWAVYANTAVRTYFINDAEAPAHGLRR--APKVAGLIR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           VV +E  D        CGG HV+ TGE   + I      + G  R+  + G  A      
Sbjct: 183 VVEIEGWD-----RVACGGLHVARTGEAGPIKITRFERYKGG-TRVYFMAGWEALELFEQ 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           +   L  L  +   S   V   +  + EE+R+ +  +A  K +L   +     +      
Sbjct: 237 EHRLLARLGEWFSSSPLEVEKPIGNLREEWRRARAENAALKDELA--ERIMRDLLTEFPT 294

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
             + ++V    L  V   L +    G++ L+    E KA  +++      +   A  +  
Sbjct: 295 QTMAAQVPHSVLDMVGKRLAE--WPGVLALLVAQAEDKARYVLLKHPSRSEDLQA--IWE 350

Query: 858 LSAKVLGGGGGG 869
              K LG  GGG
Sbjct: 351 EVLKPLGARGGG 362


>gi|160943556|ref|ZP_02090789.1| hypothetical protein FAEPRAM212_01049 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445235|gb|EDP22238.1| hypothetical protein FAEPRAM212_01049 [Faecalibacterium prausnitzii
           M21/2]
          Length = 396

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 155/412 (37%), Gaps = 38/412 (9%)

Query: 494 AIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK 548
           A   + E V  A    +      +  D T FY E GGQ  D G   + DG  L++ DV +
Sbjct: 12  AFRTECESVILATEPDEKTGGGRIALDGTVFYPEGGGQPADRGTLTLPDGTVLRVLDVHE 71

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           +A G+  H             ++   ID+  R      H+  H+L   L  + G+     
Sbjct: 72  QA-GVIWHTVDALPAAAAPGAAVAGCIDWDWRFDKMQQHTGEHILSGILHQMFGA--ENV 128

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  +  + +R D   S PI+   L+  E   N I+ Q++PV+     RE+  A    +  
Sbjct: 129 GFHVGTEVVRMDT--SVPISPEGLRQAELAANRIVWQDVPVLISYPTREELAALVYRS-- 184

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +   +VR+V++   D        C GTH  +TG++  + I++  + + G+ R+  + G
Sbjct: 185 KKEIEGQVRIVTIPGAD-----VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCG 238

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDL 786
            RA +       +   + + L          V  +++EY  L+  H     QL   +  L
Sbjct: 239 ARALAAAQAMRARQAEIGALLSAKADQTAVAVHRVYDEYTALKFTHFGLCSQLFDALAQL 298

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +      +      +  +D   L  +   L +        L    K      L     D+
Sbjct: 299 TAPDADAIR----TLPGLDPDGLHRLAVRLTEATTGLCAALTPTEK-GTGYCLARRDGDV 353

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                A++ A         G GGG+P + Q          +    V  FLK+
Sbjct: 354 RALTKALNAA-------LNGRGGGKPGICQGS---CAATPE---QVERFLKE 392


>gi|295103797|emb|CBL01341.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Faecalibacterium prausnitzii
           SL3/3]
          Length = 396

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/412 (22%), Positives = 155/412 (37%), Gaps = 38/412 (9%)

Query: 494 AIVQQGEIVEEAVSGQK----VEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK 548
           A     E V  A    +      +  D T FY E GGQ  D G   + DG  L+++DV +
Sbjct: 12  AFRTGCESVILATEPDEKTGGGRIALDGTVFYPEGGGQPADRGTLTLPDGTVLRVSDVHE 71

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           +A GI  H             ++   ID+  R      H+  H+L   L  + G+     
Sbjct: 72  QA-GIIWHTVDALPAAAAPGAAVAGCIDWDWRFDKMQQHTGEHILSGILHQMFGA--ENV 128

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  +  + +R D   S PI+   L+  E   N I+ Q++PV+     RE+  A    +  
Sbjct: 129 GFHVGTEVVRMDT--SVPISPEGLRQAELAANRIVWQDVPVLISYPTREELAALVYRS-- 184

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +   +VR+V++   D        C GTH  +TG++  + I++  + + G+ R+  + G
Sbjct: 185 KKEIEGQVRIVTIPGAD-----VCACCGTHTRTTGQVGQIKILASENYKGGV-RLSVVCG 238

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDL 786
            RA +       +   + + L          V  +++EY  L+  H     QL   +  L
Sbjct: 239 ARALAAAQAMRARQAEIGALLSAKADQTAVAVHRVYDEYTALKFTHFGLCSQLFDALAQL 298

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +      +      +  +D   L  +   L +        L    K      L     D+
Sbjct: 299 TAPDADAIR----TLPGLDPDGLHRLAVRLTEATTGLCAALTPTEK-GTGYCLARRDGDV 353

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                A++ A         G GGG+P + Q          +    V  FLK+
Sbjct: 354 RALTKALNAA-------LNGRGGGKPGICQGS---CAATPE---QVERFLKE 392


>gi|297565180|ref|YP_003684152.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus silvanus DSM 9946]
 gi|296849629|gb|ADH62644.1| Threonyl/alanyl tRNA synthetase SAD [Meiothermus silvanus DSM 9946]
          Length = 398

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 146/382 (38%), Gaps = 36/382 (9%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK---------- 548
             ++     G K   V DQT FY  AGGQ  DTG   G    +++ DV++          
Sbjct: 15  ARVLRAWSEGGKHYAVLDQTLFYPTAGGQANDTGTLDG----VRVVDVREASFRGEGGVD 70

Query: 549 -KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
            KA+G  VH   V    L     +   +D+  R +    H+A H L  A     G     
Sbjct: 71  GKAKGEVVH---VLEAPLPEGQEVQGELDWTRRYRHMQRHTAEHTLAQAFWRAAG----W 123

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
               +   G    +  S     A ++  E   N  +  N PV T  +   +  +      
Sbjct: 124 ETLAVNMSGPVCTIDFSGEPNPATIQQAEALANWAVYANTPVKTFWLEDSEVGSYPLRR- 182

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
              K + R+R+V +E  D        CGGTHV+ TGE   + IV     + G  R+  + 
Sbjct: 183 -APKVSGRIRIVEIEGWD-----MVACGGTHVARTGEAGPIKIVKYERYKGG-TRVYFMA 235

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A      +   L  +A         V   +  + +E+ +L+  +   K +L  E + 
Sbjct: 236 GWEALETFHQEHAILTRVAEKFSAHYLEVEKPIHNLRDEFFRLKGENHALKEEL-AERVM 294

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
              +A+    + I ++V +  +++V   L +     ++ L+    E KA  ++       
Sbjct: 295 RELLAEFPEHT-IFAQVPAVVIEAVGKRLAE--WPNVLALLVAPGEGKARFVLTKHHSRP 351

Query: 848 DRFNAVDLARLSAKVLGGGGGG 869
           +   A  + +   + LG  GGG
Sbjct: 352 EDLQA--IWKEVLEPLGAKGGG 371


>gi|86160636|ref|YP_467421.1| threonyl/alanyl tRNA synthetase, SAD [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777147|gb|ABC83984.1| Threonyl/alanyl tRNA synthetase, SAD [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 408

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 145/398 (36%), Gaps = 28/398 (7%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +  +  +V       +  VV D+T FY E GGQ  D G   G      + DVQ+  +G  
Sbjct: 13  LTFEARVVGVRTLAGRPAVVLDRTAFYPEGGGQPADRGRLGG----AAVVDVQE-VDGEV 67

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H   +E         +   +D   RR     H   HLL  A     G+H       +  
Sbjct: 68  LH--ALEGAPPDAGAPVPGEVDAVRRRDHLQQHHGQHLLSAAFEATAGAHTVS--FHLGA 123

Query: 615 DGLRFDVTHSKPITSAE-LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           +    D+  +      E L++ E   ND++ ++LPV  R     +  A            
Sbjct: 124 ETCTIDLDAAPASLGEERLRAAEARANDLVFRDLPVTARDFAPAELAALPLRKAPE---K 180

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
               VV  +   G V  ++ CGGTH   TG +  + ++       G  R+E + G RA  
Sbjct: 181 GARIVVVGDPARGEVVDASPCGGTHPRRTGAVGAIAVLGAQRWGGG-TRVEFVCGARAVR 239

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCH 789
            L     +L + A+ L+ +   V      +  E     + L  + A           +  
Sbjct: 240 ALAEARGRLAAAAASLRCAPAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLATAQ 299

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL--- 846
               V  +    +   +  L++V   L  +   G    +G  ++ +A +      +    
Sbjct: 300 PAGAVRAVLAPPAPGAAGYLRAVASGLAAR---GRAAFLGAVEDGRAHLAFARPREAGPG 356

Query: 847 ---LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881
                R +     R +A  L GG GGG P +AQ  GP+
Sbjct: 357 APGAVRLDMGARVREAAARL-GGKGGGAPDLAQGSGPD 393


>gi|330799188|ref|XP_003287629.1| hypothetical protein DICPUDRAFT_151768 [Dictyostelium purpureum]
 gi|325082356|gb|EGC35840.1| hypothetical protein DICPUDRAFT_151768 [Dictyostelium purpureum]
          Length = 208

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/146 (62%), Positives = 109/146 (74%), Gaps = 2/146 (1%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
             FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FT  E+  Y+ VTT QKCV
Sbjct: 2   RKFLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTALEESKYKLVTTSQKCV 61

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRRLY 126
           RAGGKHNDL N+G T RHHTFFEML NFSFGGY  FK  +IQ AW+LLTK+F L + RL 
Sbjct: 62  RAGGKHNDLKNIGYTARHHTFFEMLSNFSFGGYNHFKRDSIQHAWNLLTKDFGLPKERLA 121

Query: 127 ITVYDEDEEAFKLWKKISGLSADKII 152
           I+V + DEE+  +W+   GLS DKI+
Sbjct: 122 ISVLEGDEESASIWRDQIGLSNDKIM 147


>gi|229545938|ref|ZP_04434663.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229308901|gb|EEN74888.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 134

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/133 (47%), Positives = 83/133 (62%), Gaps = 6/133 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             S +R  +L+FF+  GH + PS+SL+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   TSSQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YFK  AI  AW+ LT  +    
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAF 120

Query: 121 DQRRLYITVYDED 133
           D  +LY+TVY +D
Sbjct: 121 DPEKLYVTVYPKD 133


>gi|14521955|ref|NP_127432.1| alanyl-tRNA synthetase related protein (fragment) [Pyrococcus
           abyssi GE5]
 gi|5459175|emb|CAB50661.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 405

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 156/413 (37%), Gaps = 39/413 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +I +  + G K+EV   +T FY   GGQ GD G   GDG  + + D  ++ +G   H 
Sbjct: 16  KAKISDLTIKGDKIEVSLTETIFYPRGGGQPGDKGKIRGDGFEIIVEDTVER-DGEIWHV 74

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +          + L +D++ R      H+  H+L   L       +  +G  I  D  
Sbjct: 75  GKLNGRTPEVGEEVELELDWEWRYGNMQMHTGQHILSAVLKKRY--DLDTSGFNIFGDYA 132

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + +V  +  +    ++  E   N +I  +LPV                         ++R
Sbjct: 133 KIEV--NGELNWEMIEEAELEANKVIIDDLPVRVEEYEVLPKGVVEKLRKYIPNIKGKIR 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +    G       CGGTHV ST E+ ++ ++          RIE   G RA   L  
Sbjct: 191 IVRI----GENFDLTPCGGTHVKSTREVGVIKVLRFYKKSKDTWRIEFTCGFRAIKKLN- 245

Query: 738 QDEKLKSLASFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
             E LK   S L                V+  VE + E+   ++    K K +  +    
Sbjct: 246 --EILKDYWSALDAMPNKNPPLSERVREVLESVESLEEKVDSMRKEVWKWKEESLLG--R 301

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +I   N ++  + + D K+ ++      K     I++L          V++   E++ 
Sbjct: 302 SIEIGHYNVVTF-VEKWDIKDAQAFAVDFVKNNPGTIVVLASED-----YVILARNEEVE 355

Query: 848 DRFNAV--DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               ++  DL +       GG GGG  ++A+  G    + +  I  V   L++
Sbjct: 356 VSMKSLLEDLIKE-----FGGKGGGTDNLAR--GKIEAEPEDVIDFVVDRLRE 401


>gi|255307175|ref|ZP_05351346.1| putative RNA-binding protein [Clostridium difficile ATCC 43255]
          Length = 399

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 177/412 (42%), Gaps = 42/412 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+E      K  V+ D+T F+   GGQ GD G    D     + +V +  + I+    
Sbjct: 16  AEIIEIKEVENKYHVLLDKTAFFPGGGGQFGDLGKIESDD----VINVYEDGKNIYH--- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----GSHVSQNGSCIT 613
           ++++  ++    +  +ID+  R      H   H+L             G H+    S + 
Sbjct: 69  VLDKKPIKIH-KVKCSIDWDRREDGMHQHFGQHVLSGCFFKTFNANTTGFHLGNEYSTVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G          +   +++ IE   N+II QN+ V T +  +++         L    +
Sbjct: 128 IEG---------NLEEDKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-D 177

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +RV+ +     G   +  C G H  STGE+ ++ I      ++   RIE + G+RA  
Sbjct: 178 EEIRVIKI-----GDLDTNACCGVHPKSTGELRMIKIKKWEKHKS-STRIEFLAGKRAVD 231

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            ++ +D  L  +  +L  S+ + +        +VEE   + R+L+ + +  +++  +E  
Sbjct: 232 EVLKRDIYLTKICRYLSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIEK- 290

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             +K+ +++ +  I  + D K +  + + + +      I L+ +    K +++   +++L
Sbjct: 291 -ANKVGNISVIKKIYDDEDLKYVNKIANKIAE--YENSIALLAVKFNDKINLVFACSKNL 347

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            D  N   L + +  ++  G GGG   +AQ GG N    +  +      ++K
Sbjct: 348 KD-INMGVLLKDAISLI-DGKGGGSKVLAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|330973622|gb|EGH73688.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 118

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/116 (64%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M + + IR  FL FF++ GH  + SSSLIP NDPTL+FTN+GM  FK+ F GQEK  Y  
Sbjct: 1   MKS-AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTR 59

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
             T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK  AI  AW  LT 
Sbjct: 60  AVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTS 115


>gi|225389532|ref|ZP_03759256.1| hypothetical protein CLOSTASPAR_03280 [Clostridium asparagiforme
           DSM 15981]
 gi|225044396|gb|EEG54642.1| hypothetical protein CLOSTASPAR_03280 [Clostridium asparagiforme
           DSM 15981]
          Length = 403

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 147/381 (38%), Gaps = 34/381 (8%)

Query: 502 VEEAVSGQKVE--VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           VEE   G+     V  +QT FY E GGQ  DTG   G    + +  V +K +G   H   
Sbjct: 30  VEECRPGKDGTWMVALNQTGFYPEGGGQPSDTGTLDG----VLVRYVCEK-DGKVWHQVD 84

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L         ID++ R     +H+  H+L   +    G      G  +  D +  
Sbjct: 85  A---PLEPGRLAEGVIDWERRYDHMQHHTGEHILSGLIHRRYGY--DNVGFHMGKDEVTI 139

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   +  +T  +L+ +ED  N ++  N+PV       +   A    +    +   +VR++
Sbjct: 140 DF--NGLLTMEQLEELEDMANGVVWDNVPVEEHFPTPQQLAALDYRS--KKELTGQVRII 195

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ++   D     +  C GTHV++TGE+ ++ +      + G+ RI  + G++A      + 
Sbjct: 196 NIPGGD-----TCACCGTHVTNTGEVGIIKVTGMIHYKGGV-RISILCGRKALLDYRRRV 249

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
                +++ L      +   VE++  + +  + +      +L     +    +    +  
Sbjct: 250 NVDTRISNLLSAKPQAIGDAVEKLKADGQDREAVIGGLYQKLFAFKAAACPESGSPLVCF 309

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
               +    ++ +   L ++ +  ++++   + E       + +        A    R  
Sbjct: 310 E-EGLPPVRVRQLCTLLYEQNKGNVVLVCSGTDETGEYAYALGS--------ARADMRPL 360

Query: 860 AKVLGG---GGGGGRPHMAQS 877
           ++ L G   G GGG   MAQ 
Sbjct: 361 SRTLNGCLAGRGGGSALMAQG 381


>gi|254975759|ref|ZP_05272231.1| putative RNA-binding protein [Clostridium difficile QCD-66c26]
 gi|255093146|ref|ZP_05322624.1| putative RNA-binding protein [Clostridium difficile CIP 107932]
 gi|255314888|ref|ZP_05356471.1| putative RNA-binding protein [Clostridium difficile QCD-76w55]
 gi|255517562|ref|ZP_05385238.1| putative RNA-binding protein [Clostridium difficile QCD-97b34]
 gi|255650673|ref|ZP_05397575.1| putative RNA-binding protein [Clostridium difficile QCD-37x79]
 gi|260683762|ref|YP_003215047.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260687422|ref|YP_003218556.1| putative RNA-binding protein [Clostridium difficile R20291]
 gi|306520599|ref|ZP_07406946.1| putative RNA-binding protein [Clostridium difficile QCD-32g58]
 gi|260209925|emb|CBA63887.1| putative RNA-binding protein [Clostridium difficile CD196]
 gi|260213439|emb|CBE05105.1| putative RNA-binding protein [Clostridium difficile R20291]
          Length = 399

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 177/412 (42%), Gaps = 42/412 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+E      K  V+ D+T F+   GGQ GD G    D     + +V +  + I+    
Sbjct: 16  AEIIEIKEVENKYHVLLDKTAFFPGGGGQFGDLGKIENDD----VINVYEDGKNIYH--- 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----GSHVSQNGSCIT 613
           ++++  ++    +  +ID+  R      H   H+L             G H+    S + 
Sbjct: 69  VLDKKPIKIH-KVKCSIDWDRREDGMHQHFGQHVLSGCFFKTFNANTTGFHLGNEYSTVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G          +   +++ IE   N+II QN+ V T +  +++         L    +
Sbjct: 128 IEG---------NLEENKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-D 177

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +RV+ +     G   +  C G H  STGE+ ++ I      ++   RIE + G+RA  
Sbjct: 178 EEIRVIKI-----GDLDTNACCGVHPKSTGELRMIKIKKWEKHKS-STRIEFLAGKRAVD 231

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            ++ +D  L  +  +L  S+ + +        +VEE   + R+L+ + +  +++  +E  
Sbjct: 232 EVLKRDIYLTKICRYLSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIEK- 290

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             +K+ +++ +  I  + D K +  + + + +      I L+ +    K +++   +++L
Sbjct: 291 -ANKVGNISVIKKIYDDEDLKYVNKIANKIAE--YENSIALLAVKFNDKINLVFACSKNL 347

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            D  N   L + +  ++  G GGG   +AQ GG N    +  +      ++K
Sbjct: 348 KD-INMGVLLKDAISLI-DGKGGGSKVLAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|183011888|gb|ACC37873.1| alanyl-tRNA synthetase [Archisepsis diversiformis]
          Length = 154

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 87/146 (59%), Gaps = 14/146 (9%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K  F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPFFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICTWAWEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQ 179
               DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 GNMKDNFWEMGETGPCGPCSELHFDR 145


>gi|218508118|ref|ZP_03505996.1| alanyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 177

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 89/201 (44%), Positives = 123/201 (61%), Gaps = 24/201 (11%)

Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406
           I ETL+ E+ RF KTL+RGL LL    + L K ++L+G+ AFKLYDT+G PLD+ QD L 
Sbjct: 1   ISETLKLEENRFRKTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALR 60

Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466
           AR + G+DI  F  A++ Q++ AR+H  G G   TE +WF L+EK+GAT+F+GYD     
Sbjct: 61  AREI-GVDISGFTDAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYDT---- 115

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526
                                   +V+AIV+ G + E A +G KV+VV +QTPFY E+GG
Sbjct: 116 -------------------EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGG 156

Query: 527 QLGDTGCAIGDGIRLQITDVQ 547
           Q+GDTG    D  +++I D Q
Sbjct: 157 QMGDTGVISSDHGKIEIFDTQ 177


>gi|126699779|ref|YP_001088676.1| putative RNA-binding protein [Clostridium difficile 630]
 gi|255101299|ref|ZP_05330276.1| putative RNA-binding protein [Clostridium difficile QCD-63q42]
 gi|115251216|emb|CAJ69047.1| putative alanyl-tRNA synthetase [Clostridium difficile]
          Length = 399

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 177/412 (42%), Gaps = 42/412 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI+E      K  V+ D+T F+   GGQ GD G    D + + + +  KK       + 
Sbjct: 16  AEIIEIKEVENKYHVLLDKTAFFPGGGGQFGDLGKIENDDV-INVYEDGKKI------YH 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----GSHVSQNGSCIT 613
           ++++  ++    +  +ID+  R      H   H+L             G H+    S + 
Sbjct: 69  VLDKKPIKIH-KVKCSIDWDRREDGMHQHFGQHVLSGCFFKTFNANTTGFHLGNEYSTVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G          +   +++ IE   N+II QN+ V T +  +++         L    +
Sbjct: 128 IEG---------NLEEDKIREIELFANEIIRQNIQVETLLPTKKELKKIWLRRDLPNT-D 177

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +RV+ +     G   +  C G H  STGE+ ++ I      ++   RIE + G+RA  
Sbjct: 178 EEIRVIKI-----GDLDTNACCGVHPKSTGELRMIKIKKWEKHKS-STRIEFLAGKRAVD 231

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            ++ +D  L  +  +L  S+ + +        +VEE   + R+L+ + +  +++  +E  
Sbjct: 232 EVLKRDIYLTKICRYLSCSEEDAINGIVNLNSKVEEALIKKRRLEEVVSTYQVKEMIEK- 290

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
             +K+ +++ +  I  + D K +  + + + +      I L+ +    K +++   +++L
Sbjct: 291 -ANKVGNISVIKKIYDDEDLKYVNKIANKIAE--YENSIALLAVKFNDKINLVFACSKNL 347

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            D  N   L + +  ++  G GGG   +AQ GG N    +  +      ++K
Sbjct: 348 KD-INMGVLLKDAINLI-DGKGGGSKVLAQGGGKNNGNLEATLDYAFMKIEK 397


>gi|317419211|emb|CBN81248.1| Alanyl-tRNA synthetase domain-containing protein 1 [Dicentrarchus
           labrax]
          Length = 525

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 176/462 (38%), Gaps = 36/462 (7%)

Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484
           QR  A+   + +         +  +E  G  +F  Y  +                   D 
Sbjct: 70  QRDEAKPSWIAVDFDNWRD--WEHEEDEGQDEFYRYADMIQEMTTSNKGAAPDMGDLSDF 127

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544
              V S   A ++Q E+  +  + +   V    T  + E GGQ  D G  IGD   L++T
Sbjct: 128 VTSVVSCCPAELKQ-EVNGKKETVKGFNVKLQDTILFPEGGGQPDDHG-LIGDVPVLRVT 185

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
               +A    +H        L     + + +D++ R      HS  HL+     +  G  
Sbjct: 186 RQGTEA----IHFV---SSPLEEGQEVQVKVDWERRFDHMQQHSGQHLITALADSFFGYK 238

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASG 663
            +          +  D    KP   A+L+++E+ +N+ I  ++PV  ++++ +D A+   
Sbjct: 239 TTSWELGHQRSTIELDTPSVKP---AQLQALEEAINENIRAHVPVTVQLLSIDDPAVEKV 295

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +  L   +   +R++ +E  D       +C GTHVS+   + ++ ++     +     +
Sbjct: 296 RSRGLPEDHAGPIRIIDIEGIDAN-----MCCGTHVSNLSHLQVIKLLGTEKGKKNKTNL 350

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQL 781
             + G R   +        +SL S LK      V  V+++ +  + LQ  +    R + +
Sbjct: 351 IFLAGNRVLKYAEKSYSTERSLVSLLKTGPDVHVEAVDKLQKSVKLLQKTNLSLLRDMAV 410

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
            +     +     NF S    E D++ +  +++ +  +     ++ + + +EK     ++
Sbjct: 411 LIAQNFKNDPQRGNFFSLHKKEGDNEFMNIIVNEINTEET---LVFLTVGEEKGPGCFVL 467

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGG------GRPH-MAQ 876
                  R     L     ++L G G G      G+ + +AQ
Sbjct: 468 AGP----RGPVAKLGPRVLEILQGKGAGKNGRFQGKANSLAQ 505


>gi|257458286|ref|ZP_05623435.1| threonyl and alanyl tRNA synthetase domain protein [Treponema
           vincentii ATCC 35580]
 gi|257444313|gb|EEV19407.1| threonyl and alanyl tRNA synthetase domain protein [Treponema
           vincentii ATCC 35580]
          Length = 400

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 157/380 (41%), Gaps = 30/380 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIF 554
              ++  + + +  E+    T FY E GGQ GD G    +G +   + ++D Q + E I 
Sbjct: 18  DATVIACSKTERGYEIELSDTAFYPEGGGQPGDKGVLFAEGRQERAIHVSDTQFEGERIV 77

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                +    L     +   +D+ NR      HS  H++   LS   G      G  +  
Sbjct: 78  H----IADAKLAAGTKVHGVLDWVNRCDNMQGHSGEHIITGILSKTYGY--ENIGFHMGE 131

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
             +  D   + P+   ++   E   N+I+ +NLP+     + E+       + +  + + 
Sbjct: 132 SFITIDF--NGPLDDGQVLGAERRANEIVRENLPIQESFPSAEERKTMQYRSKI--ELSG 187

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VR++++   D     S  C GTHV++TGEI L+ I++ ++ + G+ R+E + G++A   
Sbjct: 188 TVRIITIPGLD-----SCACCGTHVTATGEIGLIKIINFTNRKKGV-RLEVLCGRKAVLA 241

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKRKLQLNVEDLSCHKIAD 793
              + E++++++  L      V   VE++  E  KL Q +H   +  L  +  +    A 
Sbjct: 242 YEQEMEQVRAISRCLSAKPTEVQEAVEKLNAEKGKLQQQLHEMTEKYLKQKAETAADTAG 301

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEKKASVL---IVVTEDLLDR 849
                +    +  + L+   + L    +      L  +  E   S     ++V+  +  +
Sbjct: 302 APV--YFEDGLSIEYLRCFCNQLLATGKRHTCAALSAVEAEGAQSPAYNYVIVSNVIDLK 359

Query: 850 FNAVDLARLSAKVLGGGGGG 869
            +     +     L G GGG
Sbjct: 360 LH----VKTLNGQLNGRGGG 375


>gi|328951539|ref|YP_004368874.1| Threonyl/alanyl tRNA synthetase SAD [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451863|gb|AEB12764.1| Threonyl/alanyl tRNA synthetase SAD [Marinithermus hydrothermalis
           DSM 14884]
          Length = 387

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 142/379 (37%), Gaps = 36/379 (9%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
             + +    G     V DQT FY  +GGQ  DTG   G    +++T V ++ +G  + H 
Sbjct: 15  ARVTQAWSEGATHYAVLDQTLFYPTSGGQPHDTGVLGG----VRVTKVLEREKGGEILH- 69

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V    L     +   I +  R +    H+A H+L  A     G         ++    R
Sbjct: 70  -VLEAPLEAGQVVEGEIHWNRRYRHMQRHTAQHILSQAFVRAAG------WPTVSVSLAR 122

Query: 619 FDVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
                       E  ++  E   N  +  NLP+     +  +A           K   R+
Sbjct: 123 PTCVIDLEADPDEGVIRKAEALANWAVYANLPIRAFFASEAEAAQLPLRR--APKVTGRI 180

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV +E  D      A CGGTH+ S+ E   + I+     R G  R+    G  A     
Sbjct: 181 RVVEIEGWDL-----AACGGTHLRSSAEAGPIKILKYEKHRRGTTRVYFTAGWEALEDYA 235

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            +   LK++A         V  RV ++    +  ++  A ++ Q  + +    ++ + + 
Sbjct: 236 AKHTALKTVAEHFSAQPLEVPARVAKLEALLQ--EVRGALQETQRLLAERIVRELLETHP 293

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV----VTEDLLDRFNA 852
              I + V +  L  V   L +    G++ L+   + ++A VL+        DL   +NA
Sbjct: 294 DRTIAALVPAVVLDEVGARLAE--WPGVLALLVAPEGERARVLLTQHPERGADLRALWNA 351

Query: 853 VDLARLSAKVLGGGGGGGR 871
                  A    G  GGGR
Sbjct: 352 -------ALRPLGAKGGGR 363


>gi|55377393|ref|YP_135243.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55230118|gb|AAV45537.1| alanyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 419

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 154/406 (37%), Gaps = 37/406 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               VV   T FYAE GGQ  D G   G    + + DVQ +   I   H + E       
Sbjct: 22  DTTAVVLTDTYFYAEGGGQPADRGTLDG----VAVVDVQHRNGDIV--HELAEPPTFGPG 75

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTI------LGSHVSQNGSCITPD------- 615
            ++   +D   R      H+A+H+L+ A   +       G  +S        D       
Sbjct: 76  ETVEGQVDTAFRTYCMRAHTASHVLYGAGRRLLSDLGYGGFDISARVPDEADDDDFGPAI 135

Query: 616 --GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
              +R D   +  I    L  +E   N  + ++  V    + R++A+     A   TK  
Sbjct: 136 TGKVRVDFETTTEIGDETLTELERLTNRAVWESYDVTWEEIPRDEALGRDDIA-FNTKTE 194

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +   +V          A CGGTHV +T EI  + ++  S+   G+ R+E   G RA  
Sbjct: 195 EGIEGETVRVVTIDGWDVAACGGTHVGNTREIGPVTVLGRSNPGEGLTRVEFAVGPRAIR 254

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SC 788
               + E+  + A  L  +   +   V+ +  E   L+   +  + +L    L       
Sbjct: 255 RRATEHERAMTAAQSLDTNVAELPAAVDGLQSECDDLRETVSSLRERLVDSRLADLRDDA 314

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
            ++    ++   ++ +D+  L    D  +  +   + +   +  +     L V T     
Sbjct: 315 IEVDGQRWLVGTVAGLDANAL---ADRAESAVGDDVDVAALVDADG--QYLGVGT---TG 366

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
             +A ++        GGGGG GRP +AQ GG   +  D+ +A +  
Sbjct: 367 GVDAGEVVDQVTTEFGGGGG-GRPTVAQGGGLGADG-DEIVAFLRD 410


>gi|218296283|ref|ZP_03497039.1| Threonyl/alanyl tRNA synthetase SAD [Thermus aquaticus Y51MC23]
 gi|218243355|gb|EED09885.1| Threonyl/alanyl tRNA synthetase SAD [Thermus aquaticus Y51MC23]
          Length = 375

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 114/310 (36%), Gaps = 13/310 (4%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G+    V  +T FY E+GGQ  DTG   G    +Q+    ++ +  F     V    +
Sbjct: 22  SDGKGHYAVLSETLFYPESGGQPADTGVLRGAFGEVQVLHAYEEEKA-FGDVVHVLSAPV 80

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   I++Q R +    H+A H+L  AL    G H       ++ D     +  ++
Sbjct: 81  PQGAEVEGEINWQRRFRHMQRHTAQHILSQALLRAGGYHTV----AVSLDSPLSTLDLAE 136

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +   +++  E      +  + PV    ++ E+            K   +VR+V +    
Sbjct: 137 EVEEEKVRQAEALAAFAVYADYPVEAFWVSEEELAHYPLRR--PPKVQGKVRLVRI---- 190

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G    A CGGTH+ ++ +   + +      + G  R+  + G  A      +   L  L
Sbjct: 191 -GDFDLAACGGTHLKTSAQAGPIKVQKWERYKGG-TRVYFMAGWEALEDYHAKHALLARL 248

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
           A     S  ++   ++ + EE   L+  +   K  L    L       V  +   +    
Sbjct: 249 ALAFSTSALDLEKPIKRLQEELYALKGENQALKEALVEALLPRALEERVLLVPQAVIPEL 308

Query: 806 SKELKSVMDA 815
           +K L S  D 
Sbjct: 309 AKRLLSWSDK 318


>gi|183011914|gb|ACC37886.1| alanyl-tRNA synthetase [Dicranosepsis hamata]
          Length = 149

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/146 (47%), Positives = 89/146 (60%), Gaps = 14/146 (9%)

Query: 47  KNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           K +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG Y
Sbjct: 1   KPVFLGTVDPNSEMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDY 60

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIR 153
           FK+     AW+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+ 
Sbjct: 61  FKKEICSWAWEFLTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILP 119

Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQ 179
            +  DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 GSMKDNFWEMGETGPCGPCSELHFDR 145


>gi|160937038|ref|ZP_02084401.1| hypothetical protein CLOBOL_01927 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439939|gb|EDP17687.1| hypothetical protein CLOBOL_01927 [Clostridium bolteae ATCC
           BAA-613]
          Length = 390

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 150/387 (38%), Gaps = 29/387 (7%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           VK+ +   E  EE+  G    V  +QT FY E GGQ  DTG   G    + +  V +K E
Sbjct: 13  VKSFMCTVEHCEESGKG-TWLVTLNQTGFYPEGGGQPYDTGTLNG----ISVVSVHEKGE 67

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            +    A      +         ID+Q R      H+  H+L   +    G      G  
Sbjct: 68  QVIHELA----QPIEEGTLAEGIIDWQRRYDNMQLHTGEHILSGLVHKHFGY--DNVGFH 121

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  + +  D   +  I   +L  +ED  N ++  N+PV     + ++       +    +
Sbjct: 122 MGAEEVTVDF--NGIIEPEDLDWLEDEANQLVYANVPVKVLYPSEDELKTMEYRS--KKE 177

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            +  VR+V V   D        C GTHV +TGE+ ++ I S    + G+ R+  + G+RA
Sbjct: 178 LSGLVRIVEVPGAD-----VCACCGTHVENTGEVGIIKIRSMIHYKGGV-RLSMLCGRRA 231

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 + +    +++ L      V   VE++  + +     +   KL  ++  L   + 
Sbjct: 232 LLDYRDRLKDEARISNLLSAKLVQVPDAVEKLKSDSQD--KDYLIGKLGSSLLALKAGQF 289

Query: 792 ADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            +    +     ++   +++     L ++ ++G+  +   +         + +     R 
Sbjct: 290 PESTEPLIVFEEDLTPIQVRQYATLLYEQNKAGVAAVCSGNDRDSEYHYALGS----SRM 345

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQS 877
           +   L++     L  G GGG   MAQ 
Sbjct: 346 DMRALSKAMNSRLS-GRGGGSSLMAQG 371


>gi|229825552|ref|ZP_04451621.1| hypothetical protein GCWU000182_00912 [Abiotrophia defectiva ATCC
           49176]
 gi|229790115|gb|EEP26229.1| hypothetical protein GCWU000182_00912 [Abiotrophia defectiva ATCC
           49176]
          Length = 400

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 146/393 (37%), Gaps = 28/393 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +I          E+V DQT F+ EAGGQ  D G          +  V    E +  H   
Sbjct: 22  KISSIVRENNLYELVLDQTLFFPEAGGQSCDKGSIKTGDSTTTVERVIIDNEDVITHIIR 81

Query: 560 VERGILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            E  +       + +   ID+ +R      HSA H+    +    G      G  ++ + 
Sbjct: 82  SELPLQPDSLIGIEIAGMIDWTHRFSNMQQHSAEHIFSGIVHRKYGF--ENVGFHLSDNN 139

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
           +  D +    +T  ++  IE   N +IAQN+ +     N  +           ++ +  +
Sbjct: 140 VTMDYSGY--LTPEQVAEIEFETNRVIAQNISITCYYPNENELKDIDYRC--KSELSGDI 195

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           R+V ++  D        C   HV  TGEI L+ ++S    + G  R+  + G RA  +  
Sbjct: 196 RIVEIKGVD-----ICACCCPHVKQTGEIGLMKVISSVRYKGG-TRLSILCGFRALEYFN 249

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
               ++  L S L   QG +V  V  +  E  +L+    +    L + ++        + 
Sbjct: 250 SIYAQMGELKSLLSAEQGEIVNTVTLLKNERDELKNKLREVNRNLLISEIDNLPDGSPSL 309

Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           +     E++ K  +  ++ L  K  +   +L G   +KK    ++ + +L        L 
Sbjct: 310 I--FADEINPKSQREALNYLISKRDNYCGILSG--NDKKGYSYLIGSNNLDS-----VLV 360

Query: 857 RLSAKVLGGGGGGGRPHM----AQSGGPNGNKA 885
           +   K      GGG+  M    AQ+        
Sbjct: 361 QAKLKEGLNAKGGGKKEMIQGFAQASRNEIEAL 393


>gi|297273145|ref|XP_001112499.2| PREDICTED: alanyl-tRNA editing protein Aarsd1-like isoform 2
           [Macaca mulatta]
          Length = 585

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 185/480 (38%), Gaps = 37/480 (7%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR---KVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  ++         KV  ++PP  +
Sbjct: 125 KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEVELAQVEHYAELLQKVSTKRPPPAM 183

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKV----EVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            +   +      +  E+  E  +G+KV     VV + T  + E GGQ  D G    D   
Sbjct: 184 DDLDFTTTVVSCRPAELQTEGSNGKKVLSGFHVVLEDTLLFPEGGGQPDDHGTI-NDISV 242

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++T   ++A+          +  L     +++ +D++ R      HS  HL+      +
Sbjct: 243 LRVTRRGEQAD-------HFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHL 295

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
                +           R  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +D 
Sbjct: 296 FKLKTTSW----ELGRFRSAIELDTPSMTTEQVAAIEQSVNEKIRDRLPVNVRELSLDDP 351

Query: 660 IASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                    L   +   VRVVS++  D     S +C GTHVS+  ++ ++ I+     + 
Sbjct: 352 EVEQVRGRGLPDDHAGPVRVVSIKGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKK 406

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAK 776
               +  + G R    +       K+L + LK    + V  V+++    + LQ   ++  
Sbjct: 407 NKTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLL 466

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           R L +++     +       +     E DS+ +  + + +  +     ++ + +  EK A
Sbjct: 467 RDLAVHIAHSLRNSPDWGGVVVLHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKGA 523

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + ++         +   L    A+VL G G G +    Q      ++  +  A +  ++
Sbjct: 524 GLFLLAGPPA----SVETLGPRVAEVLEGKGAGKKGRF-QGKATKMSRRTEVQALLQDYI 578


>gi|238925421|ref|YP_002938938.1| truncated alanine-tRNA ligase [Eubacterium rectale ATCC 33656]
 gi|238877097|gb|ACR76804.1| truncated alanine-tRNA ligase [Eubacterium rectale ATCC 33656]
          Length = 417

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 159/411 (38%), Gaps = 49/411 (11%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV----- 560
              ++ +++ +QT F+ E GGQ  D G   G     ++ DVQ K  G+  H   +     
Sbjct: 31  ADDKQFDIILNQTLFFPEEGGQSPDMGILGG----YRVVDVQIK-NGVITHTVDISADDC 85

Query: 561 ------------------ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                             E+  L   + +   ID+Q+R      HS  H+    +    G
Sbjct: 86  CEAEKETGKQITGNEFEPEKVELAAGVHVQGKIDWQHRFYNMQQHSGEHIFSGIVHRRFG 145

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
                 G  ++   +  D   S  I+  ++  +E  VN  I++N+P+     +R++    
Sbjct: 146 F--ENVGFHLSDSVVTMDF--SGVISPEDIAEVEHEVNVAISKNIPIEVTYPSRDELAQL 201

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + +  +   +VR+V+V       +    C   HV  TGEI +L +++  + + G+ R
Sbjct: 202 EYRSKI--EIEGQVRIVTVPG-----YDVCACCAPHVKRTGEIGMLKVMNYQNYKGGV-R 253

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           I  + G RA      + + +  L      +Q  +V  V ++    + L+      K  L 
Sbjct: 254 ISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKSELGTAKSAL- 312

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           ++       AD +        +D+   ++ ++ L +K  SG       + E   S +I  
Sbjct: 313 LDYKVAELPADTDNAVLFEDGIDTNTARNCVNGLVEK-YSGFSAFFTGNDEAGYSFIIG- 370

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG-NKADQAIAGV 892
           +++      A  L         G  GGG+P M Q       ++ ++ +  V
Sbjct: 371 SKNADCNTVAAALRNKL-----GARGGGKPVMVQGSVKAAKSEIEEVLKEV 416


>gi|229830124|ref|ZP_04456193.1| hypothetical protein GCWU000342_02231 [Shuttleworthia satelles DSM
           14600]
 gi|229791422|gb|EEP27536.1| hypothetical protein GCWU000342_02231 [Shuttleworthia satelles DSM
           14600]
          Length = 407

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 142/392 (36%), Gaps = 39/392 (9%)

Query: 502 VEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAI----------GDGIRLQITDV 546
           V     G+K      +++ +QT F+ E GGQ  D G  I          G   ++ + DV
Sbjct: 25  VLSCCEGEKSHKGQFDIILNQTLFFPEEGGQTPDLGLLIPLPSSPDLPAGASPQVHVLDV 84

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           + K+ G+  H      G L     +  +ID++ R     NHS  H+    + +  G    
Sbjct: 85  KIKS-GVIHHFC---DGPLAPGTPVRGSIDWERRYDNMQNHSGEHIFSGLVHSAFGY--E 138

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  ++      D  +S P+T  E+  +E   N II  N  +     + E+       +
Sbjct: 139 NVGFHLSERTCSMD--YSGPLTREEIDRLETAANRIIFDNRVIDASYPSAEELAQLDYRS 196

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                 +  VR+V++   D        C   HV  TGE+ LL ++   S + G R + A 
Sbjct: 197 --KKALSGPVRIVTIPDCD-----VCACCAPHVRRTGEVGLLKVLQIQSYKGGTRLMIA- 248

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G RA +    +   L+ ++  L   Q      + +   +   L+    +   +L   DL
Sbjct: 249 CGMRALADFRRKQSVLEEVSHLLSSPQEEAAMALSKKLADLLALKDALHEASARLLASDL 308

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           +    +  N +    + +D   L+  ++ +            G   +  + +L +   D 
Sbjct: 309 AVLDPSAAN-VCLFENGIDPIRLRQAVNQMSAAHSGYCAAFNGSDSDGYSYILSIADGDA 367

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
                   +     K      GGG   M Q  
Sbjct: 368 R-------ILNEQLKERFSARGGGSAAMCQGS 392


>gi|2316010|gb|AAC45550.1| alanyl-tRNA synthetase [Spiroplasma citri]
          Length = 136

 Score =  181 bits (459), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 6/136 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
             ++IR  +L+FF+   H  LPS SLIP +DP+L++ NSG+   K  F G++ P    +T
Sbjct: 5   TANAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG T RHHT FEMLGNFS G YFK+ AI  AW+ L   K    
Sbjct: 65  NSQKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGF 120

Query: 121 DQRRLYITVYDEDEEA 136
           D  +LY+T+Y +D+EA
Sbjct: 121 DPAKLYVTIYKDDQEA 136


>gi|217416402|ref|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1 [Homo sapiens]
 gi|119581307|gb|EAW60903.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_a [Homo
           sapiens]
 gi|194380464|dbj|BAG58385.1| unnamed protein product [Homo sapiens]
          Length = 586

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 186/481 (38%), Gaps = 38/481 (7%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  +         +KV  ++PP  +
Sbjct: 125 KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEMELAHVEHYAELLKKVSTKRPPPAM 183

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  E  +G+K      +VV + T  + E GGQ  D G    D  
Sbjct: 184 DDLDFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTI-NDIS 242

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T   ++A+          +  L     +++ +D++ R      HS  HL+      
Sbjct: 243 VLRVTRRGEQAD-------HFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADH 295

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +     +           R  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +D
Sbjct: 296 LFKLKTTSW----ELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 351

Query: 659 AI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                 +   L   +   +RVV++E  D     S +C GTHVS+  ++ ++ I+     +
Sbjct: 352 PEVEQVSGRGLPDDHAGPIRVVNIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGK 406

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHA 775
                +  ++G R    +       K+L + LK    + V  V+++    + LQ   ++ 
Sbjct: 407 KNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNL 466

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            R L +++     +       +     E DS+ +  + + +  + ++ + + VG  K   
Sbjct: 467 LRDLAVHIAHSLRNSPDWGGVVILHRKEGDSEFMNIIANEIGSE-ETLLFLTVGDEKGGG 525

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +L      +        L    A+VL G G G +    Q      ++  +A A +  +
Sbjct: 526 LFLLAGPPASVET------LGPRVAEVLEGKGAGKKGRF-QGKATKMSRRMEAQALLQDY 578

Query: 896 L 896
           +
Sbjct: 579 I 579


>gi|313125945|ref|YP_004036215.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
 gi|312292310|gb|ADQ66770.1| alanyl-tRNA synthetase [Halogeometricum borinquense DSM 11551]
          Length = 400

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 140/363 (38%), Gaps = 18/363 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E    A S    +V  DQT FYAE+GGQ  D G   G    + + DVQK    +   H +
Sbjct: 13  EFDAAATSVDGRDVTLDQTYFYAESGGQPADRGTLGG----IPLDDVQKVDGNVV--HTL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   ID   R      H+A+H+L+ A   IL S +   G  I+P+ +R 
Sbjct: 67  ASAPDFDEGETITGVIDDDFRTYCMRAHTASHVLYGAGRRIL-SDLGYGGFDISPEKVRV 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDR 675
           D   +  I    L  +E  VN  +    PV    +  E+A      A           D 
Sbjct: 126 DFVTTTEIDDEVLVELERLVNRAVWDARPVSWEEVPAEEAFERDDVAFNTKTEEGVMGDS 185

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
             +  V  ED  V   A CGGTHVS+T EI  + ++  S+   G+ R+E   G       
Sbjct: 186 DTIRLVTVEDWDV---AACGGTHVSNTLEIGPVTVLGRSNPGEGLTRVEFAVGPTGIDRR 242

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
                     A  L+ S  +       +  E + ++    K + +L  E ++  +    N
Sbjct: 243 ATVHRAALDTACELETSVDDTAEAAASLRAEKQSIEAERRKLESELLTERITEFETLAKN 302

Query: 796 FMSHIISEVDSKELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853
                +  +D  +     +A +   + ++   ++  +   ++  +++    D     +A 
Sbjct: 303 GAQWHVGVIDGFDSNDAGEAAKDVVRDENETDVVAAVGAGERPYLVVAAGSD--SGVDAG 360

Query: 854 DLA 856
           D+ 
Sbjct: 361 DVV 363


>gi|259015943|gb|ACV89254.1| alanyl-tRNA synthetase [Panorpa sp. BMW-2009]
          Length = 150

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 66/152 (43%), Positives = 89/152 (58%), Gaps = 10/152 (6%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEA 136
            HHTFFEMLGN+SFG YFK+   + AW+LLT+ F L   RLY+T +          DEE 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICEWAWELLTQVFKLPGDRLYVTYFGGDEASGLQPDEEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
             +W ++ G+ +  +I  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  RDIWIRL-GVPSAHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            +EIWNLVF+QF +++      LPK  ID GM
Sbjct: 119 VLEIWNLVFIQFNRESDSSLKSLPKKHIDCGM 150


>gi|282857461|ref|ZP_06266694.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282584746|gb|EFB90081.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 391

 Score =  180 bits (457), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 149/392 (38%), Gaps = 39/392 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              EV   QT FY E GGQL D+G          ++D ++K +G  VH+A      L   
Sbjct: 29  NGFEVTLSQTAFYPEGGGQLADSGVI----GDAAVSDTRRK-DGAIVHYA---DKPLPVG 80

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
                 ID+Q R      HS  H++   +    G      G  +  D +  D   + PI 
Sbjct: 81  SVQHGAIDWQKRFDHMQAHSGEHIVSGLVHRRWGY--DNVGFHMAADKVTVDF--NGPIG 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +L  +E + N  I  NLPV     + E+  A    +    + +  VR+V     D   
Sbjct: 137 EEQLAELERDANAAIYANLPVRVAFPSPEELAALDYRS--KKELSGAVRLVEFPGVDL-- 192

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C GTHV  +GEI L+  ++ +  + G+ RIE + G+ A      ++E+ + +   
Sbjct: 193 ---CACCGTHVERSGEIGLIKFIAMARYKGGV-RIEMLCGRLAMQDYARKNEQEREIGRI 248

Query: 749 LKVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805
                   V  V +     E         A+R  +L            ++F         
Sbjct: 249 FSAKPYETVEAVRQHVAAAEAAEARASELARRYFELRTAQFPAGDGLLIDFE----EGFK 304

Query: 806 SKELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
             EL+   DAL    K ++  ++    S  +K    ++   + + R    +  +   K L
Sbjct: 305 PAELRKFCDALVSGGKAKTAAVLSPAESNGRKGWNYVICAREPVLR----EAVKTLNKEL 360

Query: 864 GGGGGGGRPHMAQS---GGPNGNKADQAIAGV 892
            GG GGG P + Q     G      ++A+  +
Sbjct: 361 -GGRGGGDPTLVQGTFFAGR--ADIERALEAI 389


>gi|74200281|dbj|BAE22937.1| unnamed protein product [Mus musculus]
          Length = 412

 Score =  180 bits (457), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 157/399 (39%), Gaps = 33/399 (8%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G    D   L++T    +A            
Sbjct: 35  KEVLSG--FHVVLEDTLLFPEGGGQPDDRGTI-NDISVLRVTRRGAQA-------GHFTE 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  SPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSW----ELGRLRSVIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV+
Sbjct: 141 LDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D     S +C GTHVS+  ++ ++ I+     +     +  + G R    +     
Sbjct: 201 IEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMS 798
             K+L S LK    + V  V+++    + LQ  +    R L ++         A    ++
Sbjct: 256 SEKALTSLLKCGVEDHVEAVKKLQNATKLLQKNNLNHLRDLAVHTAHSLRSSPAWGGVVT 315

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LAR 857
               E DS+ +  + + +  +     ++ + +  EK A + ++          AV+ L  
Sbjct: 316 LHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKGAGLFLLAGPAE-----AVETLGP 367

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A+VL G G G +    Q      ++  +A A +  ++
Sbjct: 368 RVAEVLEGKGAGKKGRF-QGKATKMSRRAEAQALLQDYV 405


>gi|259015957|gb|ACV89261.1| alanyl-tRNA synthetase [Neotyphloceras sp. BMW-2009]
          Length = 153

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 87/153 (56%), Gaps = 10/153 (6%)

Query: 84  NRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEE 135
           + HHTFFEMLGN+SFG YFK+     AW+LLT  F L   RLY+T +          DEE
Sbjct: 2   SYHHTFFEMLGNWSFGDYFKKEICAWAWELLTGVFKLPGDRLYVTYFGGDEASGLQPDEE 61

Query: 136 AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGE 195
             ++W  + G+    ++  +  DNFW M ETGPCGPCSE+ +D+           + +  
Sbjct: 62  CKQIWLDL-GVLPSHVLPGSMKDNFWEMGETGPCGPCSELHYDRIGG-RDVPHLVNMDDP 119

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
             +EIWNLVF+Q+ ++      +LPK  ID GM
Sbjct: 120 DVLEIWNLVFIQYNRETDSTLKLLPKKHIDCGM 152


>gi|332158482|ref|YP_004423761.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331033945|gb|AEC51757.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 404

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 149/368 (40%), Gaps = 23/368 (6%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
            +  ++E    G+ V++  D+T FY E GGQ GD G   GD  ++ + +  ++  G   H
Sbjct: 15  TKARVLEVKKDGELVKIRLDRTIFYPEGGGQPGDRGVIEGDEFKVIVENTIEE-NGEIWH 73

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              +E  I +   S+ L +D++ R      H+  H+L   L  +    +   G  I  + 
Sbjct: 74  VGKLEGDIPKEGSSVKLKLDWEWRYGNMQIHTGQHILSAVLKKLY--DLDTTGFTIFGEY 131

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            + +V         E   IE   N ++  N+PV       E+     A  L  +    + 
Sbjct: 132 AKIEVNGELSWDMIERAEIEA--NKVVWSNVPVKVEE--YEELPPEVARELRKSVVKSKG 187

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           ++  V     G   +  CGGTHVS TGE+ ++ ++        + RIE   G RA + L 
Sbjct: 188 KIRIVR---VGDVDATPCGGTHVSRTGEVGVIKVLRFYKKSRDLWRIEFTCGYRAITKLD 244

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIHAKRKL---QLNVEDLSCHKI 791
              +        +      ++ RV++I    E R+ ++   +R++   +         +I
Sbjct: 245 KLLKDYWLALDMMPNKNPPLLERVKDILSSLESREKKIEELRREIWKWKGESLLRRGIRI 304

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
              N + HI  + + K+ ++      K     I++LVG          ++  ++   + +
Sbjct: 305 GGYNVVYHI-EDWNMKDAQAFAVDFVKNNPGTILILVGSE-------YVIFAKNENVKLS 356

Query: 852 AVDLARLS 859
             +L +  
Sbjct: 357 MRELLKNV 364


>gi|313905304|ref|ZP_07838671.1| Threonyl/alanyl tRNA synthetase SAD [Eubacterium cellulosolvens 6]
 gi|313469915|gb|EFR65250.1| Threonyl/alanyl tRNA synthetase SAD [Eubacterium cellulosolvens 6]
          Length = 409

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 158/382 (41%), Gaps = 37/382 (9%)

Query: 509 QKVEVVFDQ-TPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           +K E+  ++   FY E GGQ GD G      D   + + D +++ + I ++        +
Sbjct: 31  RKCEIRLNEDCIFYPEGGGQPGDRGTLTYGTDMKTVHVLDTKRQGQDIVLY----TDEPV 86

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                ++  +D++ R      HS  H+    +    G     N      D +R D   + 
Sbjct: 87  EEGTQVLQQLDWEFRFSNMQGHSGEHIFSGIVHRKFGYD---NVGFHMGDTIRVDF--NG 141

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P+T  ++  +E+  N  + +N P+   + +  +A  +        +   ++R+V++   D
Sbjct: 142 PLTWEQILEVENEANRYVWKNEPIEITVGS--EAEVADIDFRSKKELEGKIRLVTIPGAD 199

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   C G HV  TGEI ++  +S  S + G+ R+E + G +A S+L G + +   +
Sbjct: 200 -----VCACCGLHVRRTGEIGMIKCISAQSYKGGV-RLELLCGAKALSYLQGIESQNSQI 253

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHI 800
           A  L V        VE +  +     L+  K+K   N+      +IA+++      +   
Sbjct: 254 ARDLSVKPEETALAVERLRND-----LMEEKQKAAANMNRYFRARIAELHTDDGGVVIDF 308

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA----SVLIVVTEDLLDRFNAVDLA 856
             E+   +++   D + K+  + +  ++     + A    +  I  T+ ++      + A
Sbjct: 309 EKEMSVTDIRRFCDWILKQGAAKVACVLAPRDPEDAAAGWNYTIGTTDAVVCNLR--EKA 366

Query: 857 RLSAKVLGGGGGGGRPHMAQSG 878
           +   + L  G GGG P M Q  
Sbjct: 367 KEFNEALN-GRGGGSPEMIQGS 387


>gi|109115545|ref|XP_001112534.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like isoform 3
           [Macaca mulatta]
          Length = 524

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 184/480 (38%), Gaps = 37/480 (7%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR---KVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  ++         KV  ++PP  +
Sbjct: 64  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEVELAQVEHYAELLQKVSTKRPPPAM 122

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKV----EVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540
            +   +      +  E+  E  +G+KV     VV + T  + E GGQ  D G    D   
Sbjct: 123 DDLDFTTTVVSCRPAELQTEGSNGKKVLSGFHVVLEDTLLFPEGGGQPDDHGTI-NDISV 181

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           L++T   ++A+          +  L     +++ +D++ R      HS  HL+      +
Sbjct: 182 LRVTRRGEQAD-------HFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHL 234

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
                +           R  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +D 
Sbjct: 235 FKLKTTSW----ELGRFRSAIELDTPSMTTEQVAAIEQSVNEKIRDRLPVNVRELSLDDP 290

Query: 660 IASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                    L   +   VRVVS++  D     S +C GTHVS+  ++ ++ I+     + 
Sbjct: 291 EVEQVRGRGLPDDHAGPVRVVSIKGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKK 345

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAK 776
               +  + G R    +       K+L + LK    + V  V+++    + LQ   ++  
Sbjct: 346 NKTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLL 405

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           R L +++     +       +     E DS+ +  + + +  +     ++ + +  EK A
Sbjct: 406 RDLAVHIAHSLRNSPDWGGVVVLHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKGA 462

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            + ++             L    A+VL G G G +    Q      ++  +  A +  ++
Sbjct: 463 GLFLLAGPPASVET----LGPRVAEVLEGKGAGKKGRF-QGKATKMSRRTEVQALLQDYI 517


>gi|242399764|ref|YP_002995189.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
 gi|242266158|gb|ACS90840.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
          Length = 409

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 167/408 (40%), Gaps = 42/408 (10%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V   KV +  D+T FY E GGQ GD G   GDG R+++  V+ K +    H   V+  I 
Sbjct: 24  VKDSKVRLKLDRTIFYPEGGGQPGDIGIIKGDGFRVEVEKVEGKED--IWHEGKVKGRIP 81

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L +D++ R +    H+  H+L   L  +  S  +  G  I P+  + ++   +
Sbjct: 82  EVGEEVELELDWEWRYENMRQHTGQHILSAILKKMYNSDTT--GFQIFPEYNKIEINFDE 139

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVRVVSVEYE 684
            +T   + + E   N+++  NLPV              A    L      ++R+V +   
Sbjct: 140 ELTWEHILAAEFEANEVVWDNLPVEVEEYEELPEEVHNALRKDLSKNVQGKIRLVKIPNI 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        CGGTHV +TGE+  + +++       I RIE   G RA  +L    E    
Sbjct: 200 DL-----IPCGGTHVKNTGEVGFIKVLNFYKKTKNIWRIEFACGYRALIYLDKLLEDYWR 254

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHI-- 800
             + +      ++ R++E  +   +L  +    +++L          +  ++N +  I  
Sbjct: 255 SLNEMSNKNRPLLERMQEFKQLLEELEGEKDQLRKELWEWKSKALLQEAEEINGIKIISF 314

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS- 859
           +   + K+ ++ +    +K    ++++VG +      +L    +++ +R +  +L R   
Sbjct: 315 LDTWEMKDAQAFIVYFIEKNPKTVVLIVGSN-----YLLFAKNKNI-ERISMNELMREVL 368

Query: 860 ---------AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                    +++L  GGG  R              ++ I     FLK+
Sbjct: 369 NEVGGGGGGSEILARGGGFKRSP------------EEVIEIAKKFLKE 404


>gi|123884206|sp|Q08B09|AASDA_XENLA RecName: Full=Alanyl-tRNA editing protein Aarsd1-A; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein
           1-A
 gi|115529163|gb|AAI24926.1| Aarsd1-a protein [Xenopus laevis]
          Length = 412

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 141/367 (38%), Gaps = 33/367 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+   T  + E GGQ  D G        + +  V ++        A      L     
Sbjct: 40  FNVLLKDTVLFPEGGGQPDDRGFI----GEVPVLRVIRQGPDAVHFVA----SPLDPATE 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITS 629
           +++ ID+  R      HS  HL+     ++ G   +           R  +    P +T+
Sbjct: 92  VLVKIDWNRRFDHMQQHSGQHLVTAIADSLYGFKTTSW----DLGRQRSVIELDTPLVTT 147

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGV 688
            +L++IE   N  I +++PV  R++  +D       +  L   +   VR++ +E  D   
Sbjct: 148 EQLEAIEKIANQKIREHVPVHVRLITVDDPEFDMVRSRGLPDDHAGPVRIIDIEGVDAN- 206

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               +C GTHV +  ++ ++ I+     +     +  ++G+R   ++       K+L S 
Sbjct: 207 ----MCCGTHVRNLSDLQMIKILGTEKGKKNKTNLIFLSGERVLKYVSRSYNTEKTLTSL 262

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           LK      +  V+++ +  + LQ  +    R L +   +    K     F S    E D+
Sbjct: 263 LKNGPEEHIEAVDKLQKSVKALQKNNLTLLRDLAVLTAENFKSKADRGKFFSLHRKEGDN 322

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + +  + + +  +      +L     ++K S   L+     ++++F          ++L 
Sbjct: 323 EFMNIIANVIGTEDT----LLFLTIGDEKTSGLFLLAGPPGIVEKF-----GPRVCEIL- 372

Query: 865 GGGGGGR 871
            G G G+
Sbjct: 373 DGKGAGK 379


>gi|291524284|emb|CBK89871.1| Alanyl-tRNA synthetase [Eubacterium rectale DSM 17629]
          Length = 424

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 159/416 (38%), Gaps = 56/416 (13%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV------- 560
            ++ +++ +QT F+ E GGQ  D G   G     ++ DVQ K  G+  H   +       
Sbjct: 33  DKQFDIILNQTLFFPEEGGQSPDMGILGG----YRVVDVQIK-NGVITHTVDISADDCCI 87

Query: 561 -----------------------ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
                                  E+  L   + +   ID+Q+R      HS  H+    +
Sbjct: 88  MGKEEAQTEKKTDGQITGMECASEKVELAAGVHVHGKIDWQHRFYNMQQHSGEHIFSGIV 147

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
               G      G  ++   +  D   S  I+  ++  +E  VN  I++N+P+     +R+
Sbjct: 148 HRRFGF--ENVGFHLSDSVVTMDF--SGVISPEDIAEVEHEVNVAISKNIPIEVTYPSRD 203

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           +       + +  +   +VR+V+V       +    C   HV  TGEI +L +++  + +
Sbjct: 204 ELAQLEYRSKI--EIEGQVRIVTVPG-----YDVCACCAPHVKRTGEIGMLKVMNYQNYK 256

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G+ RI  + G RA      + + +  L      +Q  +V  V ++    + L+      
Sbjct: 257 GGV-RISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKSELGTA 315

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           K  L ++       AD +        +D+   ++ ++ L +K  SG       + E   S
Sbjct: 316 KSAL-LDYKVAELPADTDNAVLFEDGIDTNTARNCVNGLVEK-YSGFSAFFTGNDEAGYS 373

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG-NKADQAIAGV 892
            +I  +++      A  L         G  GGG+P M Q       ++ ++ +  V
Sbjct: 374 FIIG-SKNADCNTVAAALRNKL-----GARGGGKPVMVQGSVKAAKSEIEEVLKEV 423


>gi|193787605|dbj|BAG52811.1| unnamed protein product [Homo sapiens]
          Length = 543

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 186/481 (38%), Gaps = 38/481 (7%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  +         +KV  ++PP  +
Sbjct: 82  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEMELAHVEHYAELLKKVSTKRPPPAM 140

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  E  +G+K      +VV + T  + E GGQ  D G    D  
Sbjct: 141 DDLDFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTI-NDIS 199

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T   ++A+          +  L     +++ +D++ R      HS  HL+      
Sbjct: 200 VLRVTRRGEQAD-------HFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADH 252

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +     +           R  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +D
Sbjct: 253 LFKLKTTSW----ELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 308

Query: 659 AI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                 +   L   +   +RVV++E  D     S +C GTHVS+  ++ ++ I+     +
Sbjct: 309 PEVEQVSGRGLPDDHAGPIRVVNIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGK 363

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHA 775
                +  ++G R    +       K+L + LK    + V  V+++    + LQ   ++ 
Sbjct: 364 KNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNL 423

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            R L +++     +       +     E DS+ +  + + +  + ++ + + VG  K   
Sbjct: 424 LRDLAVHIAHSLRNSPDWGGVVILHRKEGDSEFMNIIANEIGSE-ETLLFLTVGDEKGGG 482

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +L      +        L    A+VL G G G +    Q      ++  +A A +  +
Sbjct: 483 LFLLAGPPASVET------LGPRVAEVLEGKGAGKKGRF-QGKATKMSRRMEAQALLQDY 535

Query: 896 L 896
           +
Sbjct: 536 I 536


>gi|325679368|ref|ZP_08158953.1| threonine/alanine tRNA ligase second additional domain protein
           [Ruminococcus albus 8]
 gi|324108965|gb|EGC03196.1| threonine/alanine tRNA ligase second additional domain protein
           [Ruminococcus albus 8]
          Length = 383

 Score =  178 bits (452), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 146/384 (38%), Gaps = 34/384 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  +   + +G+  E+  D++ F+ E GGQ GD G        +++ D  +K  G  VH 
Sbjct: 15  EATVTSCSPAGKYYELTLDRSAFFPEGGGQKGDVGLI----DSVKVLDTYEK-NGEVVHK 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  +   M +   +D   R +   NHS  HLL   +    G      G  +  D +
Sbjct: 70  CTA---PIEAGMQVCGEVDADIRLRRMQNHSGEHLLMGVIHRKTGF--ENVGFHLGSDDV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     I +  L   E   N  IA +LPV     + E        + L  +  + VR
Sbjct: 125 TLDL--DGVIPTETLIECEFLANKAIAADLPVTISYPDSESLKTLEYRSKL--EMTENVR 180

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V++E  D        C   HV+STG+I ++ ++S  S + G  R+  + G  A   +  
Sbjct: 181 IVTIEGVD-----VCACCAPHVASTGQIGIIKVLSAESYKGG-TRLHILCGLDAFELIRN 234

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCHKIADV 794
           + ++L +++  L      ++ + + + +E   L+   A   +RK    +  LS       
Sbjct: 235 RMDELSAISRLLSAKPEKILEQTKRLIDENDALKRQLADIEQRKAARIISSLSNSTRGSF 294

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
              +     +++  ++ + +   K       +      E   + +I      L   +A  
Sbjct: 295 CVFT---EGLNTASMRDIANEAVKLTDGAAGIFC--QNENGWNYIIASDSLPLRSMSA-- 347

Query: 855 LARLSAKVLGGGGGGGRPHMAQSG 878
                   L  G GGG   M Q  
Sbjct: 348 ---QINSALN-GKGGGSDKMLQGS 367


>gi|291535695|emb|CBL08807.1| Alanyl-tRNA synthetase [Roseburia intestinalis M50/1]
          Length = 385

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 161/377 (42%), Gaps = 34/377 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ D+T F+ E GGQ  D G   G    +++TDVQ K + I        +  L    +
Sbjct: 33  YHVILDRTLFFPEEGGQSPDKGTIDG----IEVTDVQIKKDVITHSL----KEPLAVGET 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+ +R      HS  H+    + +  G      G  ++ + +  D   +  +T+ 
Sbjct: 85  VHGIIDWTHRFNNMQQHSGEHIFSGIVHSRFGY--DNVGFHLSDNIVTMDF--NGVLTAD 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +E  VN++I +NLPV     ++E+       + +  +   +VR+V++   D     
Sbjct: 141 EVREVETAVNEVIVKNLPVEITYPSKEELKTLDYRSKI--EIEGQVRIVTIPGVD----- 193

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++  L 
Sbjct: 194 VCACCAPHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISGTLS 252

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +Q  +   VE++ +  + L+   A+ K Q  VE       AD   +    +++D+  ++
Sbjct: 253 ANQELLPELVEKLKQSNQDLKYKLAQAK-QKLVEQKMKEIPADQENVLLFETDLDTPVMR 311

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL---GGGG 867
           + ++ L +       + V   +     ++   T+D           R  A +L    G  
Sbjct: 312 NAINGLVETHAGICGIFVEKEEGGYNFIIGSKTKD----------CREIATLLREKTGAR 361

Query: 868 GGGRPHMAQSGGPNGNK 884
           GGG   M Q       K
Sbjct: 362 GGGSAAMIQGSVSAEEK 378


>gi|13376886|ref|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [Homo sapiens]
 gi|13278807|gb|AAH04172.1| Alanyl-tRNA synthetase domain containing 1 [Homo sapiens]
 gi|17939656|gb|AAH19324.1| Alanyl-tRNA synthetase domain containing 1 [Homo sapiens]
 gi|119581308|gb|EAW60904.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_b [Homo
           sapiens]
 gi|190689425|gb|ACE86487.1| alanyl-tRNA synthetase domain containing 1 protein [synthetic
           construct]
 gi|190690787|gb|ACE87168.1| alanyl-tRNA synthetase domain containing 1 protein [synthetic
           construct]
          Length = 525

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 186/481 (38%), Gaps = 38/481 (7%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  +         +KV  ++PP  +
Sbjct: 64  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEMELAHVEHYAELLKKVSTKRPPPAM 122

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  E  +G+K      +VV + T  + E GGQ  D G    D  
Sbjct: 123 DDLDFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTI-NDIS 181

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T   ++A+          +  L     +++ +D++ R      HS  HL+      
Sbjct: 182 VLRVTRRGEQAD-------HFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADH 234

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +     +           R  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +D
Sbjct: 235 LFKLKTTSW----ELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 290

Query: 659 AI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                 +   L   +   +RVV++E  D     S +C GTHVS+  ++ ++ I+     +
Sbjct: 291 PEVEQVSGRGLPDDHAGPIRVVNIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGK 345

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHA 775
                +  ++G R    +       K+L + LK    + V  V+++    + LQ   ++ 
Sbjct: 346 KNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNL 405

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            R L +++     +       +     E DS+ +  + + +  + ++ + + VG  K   
Sbjct: 406 LRDLAVHIAHSLRNSPDWGGVVILHRKEGDSEFMNIIANEIGSE-ETLLFLTVGDEKGGG 464

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             +L      +        L    A+VL G G G +    Q      ++  +A A +  +
Sbjct: 465 LFLLAGPPASVET------LGPRVAEVLEGKGAGKKGRF-QGKATKMSRRMEAQALLQDY 517

Query: 896 L 896
           +
Sbjct: 518 I 518


>gi|317055145|ref|YP_004103612.1| alanyl-tRNA synthetase, class IIc-like protein [Ruminococcus albus
           7]
 gi|315447414|gb|ADU20978.1| Alanyl-tRNA synthetase, class IIc-like protein [Ruminococcus albus
           7]
          Length = 384

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 155/394 (39%), Gaps = 31/394 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             ++   A + +  EV+ D+T F+ E GGQ GD G   G    +++TD  ++  G  +H 
Sbjct: 15  DAQVTACAETEKGYEVILDRTAFFPEGGGQAGDAGTLDG----VKVTDTYER-NGEVIHL 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
               R  L     +   ID   R +   NHS  HLL   +  + G      G  +  + +
Sbjct: 70  C---RSSLEVGKKVYGEIDADIRIRRMQNHSGEHLLMGFIHNMTGY--ENVGFHMGSEEV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     I++ +++  E   N+ +A ++P+     + E+       + L  +  + VR
Sbjct: 125 LLDL--DGVISAEDIRICEQKANEAVAADVPITISYPDGEELSCMEYRSKL--EMTENVR 180

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V++E  D        C   H  STG I ++ ++S  S R G  R+  I G  A   +  
Sbjct: 181 IVTIEGID-----RCACCAPHFPSTGSIGIIKVISAESNRGG-TRLHIICGLDALDLIRQ 234

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
           + E   +++  L          VE++  E   L+   A+ + +   + +   K       
Sbjct: 235 RMESNAAISRMLSAKPEKTADAVEKLLGENAALKKQLAENERRAAEDIIGSIKNDSRKSF 294

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
                 +    ++ + +   K     + +L   S++      I+ +E L  R  A D+  
Sbjct: 295 CVFTRGIGRNNMQKIANHAVKLTDGAVAVL---SEDAAGFGYIIASEKLPLRAMAKDI-- 349

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
               +  GG GGG   M Q          +AI  
Sbjct: 350 ---NLALGGKGGGSDQMIQGTFTAP---KEAIES 377


>gi|240146561|ref|ZP_04745162.1| putative alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257201292|gb|EEU99576.1| putative alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 385

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 160/377 (42%), Gaps = 34/377 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ D+T F+ E GGQ  D G   G    +++TDVQ K + I        +  L    +
Sbjct: 33  YHVILDRTLFFPEEGGQSPDKGTIDG----IEVTDVQIKKDVITHSL----KEPLAVGET 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+ +R      HS  H+    + +  G      G  ++ + +  D   +  +T+ 
Sbjct: 85  VHGIIDWTHRFNNMQQHSGEHIFSGIVHSRFGY--DNVGFHLSDNIVTMDF--NGVLTAD 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +E   N++I +NLPV     ++E+       + +  +   +VR+V++   D     
Sbjct: 141 EVREVETAANEVIVKNLPVEITYPSKEELKTLDYRSKI--EIEGQVRIVTIPGVD----- 193

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++  L 
Sbjct: 194 VCACCAPHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISGTLS 252

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +Q  +   VE++ +  + L+   A+ K Q  VE       AD   +    +++D+  ++
Sbjct: 253 ANQELLPELVEKLKQSNQDLKYKLAQAK-QKLVEQKMKEIPADQENVLLFETDLDTPVMR 311

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL---GGGG 867
           + ++ L +       + V   +     ++   T+D           R  A +L    G  
Sbjct: 312 NAINGLVETHAGICGIFVEKEEGGYNFIIGSKTKD----------CREIATLLREKTGAR 361

Query: 868 GGGRPHMAQSGGPNGNK 884
           GGG   M Q       K
Sbjct: 362 GGGSAAMIQGSVSAEEK 378


>gi|125987702|sp|Q9BTE6|AASD1_HUMAN RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
          Length = 412

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 161/398 (40%), Gaps = 31/398 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G    D   L++T   ++A+          +
Sbjct: 35  KEVLSG--FQVVLEDTVLFPEGGGQPDDRGTI-NDISVLRVTRRGEQAD-------HFTQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     +++ +D++ R      HS  HL+      +     +           R  + 
Sbjct: 85  TPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSW----ELGRFRSAIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN+ I   LPV  R ++ +D      +   L   +   +RVV+
Sbjct: 141 LDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVN 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D     S +C GTHVS+  ++ ++ I+     +     +  ++G R    +     
Sbjct: 201 IEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAKRKLQLNVEDLSCHKIADVNFMS 798
             K+L + LK    + V  V+++    + LQ   ++  R L +++     +       + 
Sbjct: 256 TEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGGVVI 315

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
               E DS+ +  + + +  + ++ + + VG  K     +L      +        L   
Sbjct: 316 LHRKEGDSEFMNIIANEIGSE-ETLLFLTVGDEKGGGLFLLAGPPASVET------LGPR 368

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            A+VL G G G +    Q      ++  +A A +  ++
Sbjct: 369 VAEVLEGKGAGKKGRF-QGKATKMSRRMEAQALLQDYI 405


>gi|239626668|ref|ZP_04669699.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516814|gb|EEQ56680.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 390

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 156/395 (39%), Gaps = 45/395 (11%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
           VK+ +   E  E +  G     V +Q  FY E GGQ  DTG       ++ +  V ++ E
Sbjct: 13  VKSFMCTVERCEASGKG-TWLAVLNQNGFYPEGGGQPSDTGTLN----QVPVLSVHEQGE 67

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
            I    A      L         ID+Q R      H+  H+L   +    G      G  
Sbjct: 68  EILHELA----SPLEPGTLAEGVIDWQKRYDNMQQHTGEHILSGLVHRRYGY--DNVGFH 121

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +    +  D   +  +T+ EL  +ED  N ++  N+PV T   ++E+  +    +    +
Sbjct: 122 MGAGEVTVDF--NGIMTAEELDGLEDAANQVVYDNVPVHTLYPSKEELPSIDYRS--KKE 177

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            + +VR++ +   D        C GTHV +TGE+ ++ I      + G+ RI  + G+RA
Sbjct: 178 LSGQVRIIEIPGGD-----VCACCGTHVENTGEVGIIKIRGMIRYKGGV-RISMLCGRRA 231

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 + +    L++ L      V   VE++  + +  ++   +   QL +E  +    
Sbjct: 232 LLDYRERLKDGIRLSNLLSAKLHLVPEAVEKLKNDCQDREMEIGRLYGQL-LELRAGQYP 290

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEKKASVLIV--------V 842
                ++     ++  +++ +   L ++ +  ++M+  G   E +    +         +
Sbjct: 291 ESSRPLAIFEEGLNMVQIRRLSTLLYEQKKGSVVMVCSGNGTEGEYQYALGSSSMDMRTL 350

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           ++D+  + +              G GGG   MAQ 
Sbjct: 351 SKDMNGKLH--------------GRGGGSSLMAQG 371


>gi|183011932|gb|ACC37895.1| alanyl-tRNA synthetase [Nemopoda nitidula]
          Length = 159

 Score =  178 bits (451), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 87/154 (56%), Gaps = 10/154 (6%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ 
Sbjct: 8   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICSWAWEF 67

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W  + G+  + I+     DNFW M E
Sbjct: 68  LTERLCLPKDRLYVTYFGGDAASGLEPDLECKQMWTDL-GVKPEHILPGNMKDNFWEMGE 126

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIE 199
           TGPCGPCSE+ FD+           + +    +E
Sbjct: 127 TGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLE 159


>gi|183011992|gb|ACC37925.1| alanyl-tRNA synthetase [Themira superba]
          Length = 146

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 67/143 (46%), Positives = 87/143 (60%), Gaps = 14/143 (9%)

Query: 50  FTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
           F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK 
Sbjct: 1   FLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKR 60

Query: 105 RAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITT 156
                AW+ LT+   L + RLY+T +        + D E  ++W ++ GL  + I+  + 
Sbjct: 61  EICTWAWEFLTERLCLPKDRLYVTYFGGDVASGLEPDLECKQIWTEL-GLKPEHILPGSM 119

Query: 157 NDNFWSMAETGPCGPCSEIFFDQ 179
            DNFW M ETGPCGPCSE+ FD+
Sbjct: 120 KDNFWEMGETGPCGPCSELHFDR 142


>gi|291540969|emb|CBL14080.1| Predicted metal-dependent hydrolases related to alanyl-tRNA
           synthetase HxxxH domain [Roseburia intestinalis XB6B4]
          Length = 385

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 160/377 (42%), Gaps = 34/377 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ D+T F+ E GGQ  D G   G    +++TDVQ K + I        +  L    +
Sbjct: 33  YHVILDRTLFFPEEGGQSPDKGTIDG----IEVTDVQIKKDVITHSL----KEPLAVGET 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   ID+ +R      HS  H+    + +  G      G  ++ + +  D   +  +T+ 
Sbjct: 85  VHGIIDWTHRFNNMQQHSGEHIFSGIVHSRFGY--DNVGFHLSDNIVTMDF--NGVLTAD 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +E   N++I +NLPV     ++E+       + +  +   +VR+V++   D     
Sbjct: 141 EVREVETAANEVIVKNLPVKITYPSKEELKTLDYRSKI--EIEGQVRIVTIPGVD----- 193

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
              C   HV  TGEI +L + S S+ + G+ RI  ++G RA      + + + S++  L 
Sbjct: 194 VCACCAPHVKKTGEIGMLNVQSLSNYKGGV-RISILSGFRALEEERKKSQVISSISGTLS 252

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            +Q  +   VE++ +  + L+   A+ K Q  VE       AD   +    +++D+  ++
Sbjct: 253 ANQELLPELVEKLKQSNQDLKYKLAQAK-QKLVEQKMKEIPADQENVLLFETDLDTPVMR 311

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL---GGGG 867
           + ++ L +       + V   +     ++   T+D           R  A +L    G  
Sbjct: 312 NAINGLVETHAGICGIFVEKEEGGYNFIIGSKTKD----------CREIATLLREKTGAR 361

Query: 868 GGGRPHMAQSGGPNGNK 884
           GGG   M Q       K
Sbjct: 362 GGGSAAMIQGSVSAEEK 378


>gi|299561752|gb|ADJ36948.1| alanyl-tRNA synthetase [Taeniaptera trivittata]
          Length = 143

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/145 (41%), Positives = 84/145 (57%), Gaps = 10/145 (6%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EA 136
            HHTFFEMLGN+SFG YFK+     AW+ LT+  +L + RLY+T +  DE        E 
Sbjct: 1   YHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLNLPKDRLYVTYFGGDEASGLGPDLEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            ++W  + GL  + I+  +  DNFW M ETGPCGPCSE+ FD+           + +   
Sbjct: 61  KQIWTDL-GLRPEHILPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQNKQERFILPK 221
            +EIWNLVF+Q+ ++      +LPK
Sbjct: 119 VLEIWNLVFIQYNREPDGSLSLLPK 143


>gi|114667072|ref|XP_001157692.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 1
           [Pan troglodytes]
 gi|114667074|ref|XP_001157998.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 2
           [Pan troglodytes]
 gi|114667076|ref|XP_511526.2| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 4
           [Pan troglodytes]
 gi|114667078|ref|XP_001158111.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 isoform 3
           [Pan troglodytes]
          Length = 527

 Score =  177 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 183/485 (37%), Gaps = 44/485 (9%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  +         +KV  ++PP  +
Sbjct: 64  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEMELAHVEHYAELLKKVSTKRPPPAM 122

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  E  +G+K      +VV + T  + E GGQ  D G    D  
Sbjct: 123 DDLDFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTI-NDIS 181

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T   ++A+          +  L     +++ +D++ R      HS  HL+      
Sbjct: 182 VLRVTRRGEQAD-------HFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADH 234

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +     +           R  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +D
Sbjct: 235 LFKLKTTSW----ELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 290

Query: 659 AI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                 +   L   +   +RVVS+E  D     S +C GTHVS+  ++ ++ I+     +
Sbjct: 291 PEVEQVSGRGLPDDHAGPIRVVSIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGK 345

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA-- 775
                +  + G R    +       K+L + LK    + V  V+++    + LQ      
Sbjct: 346 KNRTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKAEVAV 405

Query: 776 ----KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
                  LQ ++      + + V  +    +  DS+E   ++    +      ++ + + 
Sbjct: 406 SRDCATALQQSLALSPRLEYSGV--IMAHCNRTDSQEAHVLV---WETNMCETLLFLTVG 460

Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891
            EK A + ++             L    A+VL G G G +    Q      ++  +A A 
Sbjct: 461 DEKGAGLFLLAGPPASVET----LGPRVAEVLEGKGAGKKGRF-QGKATKMSRRMEAQAL 515

Query: 892 VASFL 896
           +  ++
Sbjct: 516 LQDYI 520


>gi|292656836|ref|YP_003536733.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291371887|gb|ADE04114.1| alanyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 398

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 32/397 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               VV D+T FY E GGQ  D G   G    + +  V+  A+G  VH    + G     
Sbjct: 23  DGRSVVLDETYFYLEGGGQPADRGVLGG----VDVEHVRTNADGAVVHDLAADPG-FAAG 77

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
                 +D   R      H+A+H+L+ A   I    +   G  I+ + +R D   S  + 
Sbjct: 78  DEATGVVDDDFRTYCMRAHTASHVLYGAGRRIF-DDLGYGGFDISAEKVRVDFETSTEVD 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVS 680
              L  +E  VN  +  +  V    ++  +A      A        +     ++ VRVVS
Sbjct: 137 DDALVELERLVNRAVWDSREVSWEEISVAEARDREEIAFNVKTEEGVFSE--SETVRVVS 194

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           ++  D      A CGGTHVS+T EI  + ++  S+   G+ R+E   G  A         
Sbjct: 195 IDGWDW-----AACGGTHVSNTVEIGPVEVLGRSNPGEGLTRVEFAVGSSAVDRRAAVRG 249

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS-- 798
                A  L  +   +            +L+   A  K ++    L+  +  + + ++  
Sbjct: 250 SAYEAARALGTNLDGLGESAAAAAAAREELESELADLKSEVLRSRLADFETVERDGLTWN 309

Query: 799 -HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              +S  D+ E+       +    + + + V + +     V++    D        ++  
Sbjct: 310 VGAVSGFDANEVGEAAKEARD--GAAVDVFVAVGESDAPFVVVASAGDAAAGKVVAEVTD 367

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                 GG      P  AQ GG  G  AD+ +A +  
Sbjct: 368 EFGGGGGG-----GPTFAQGGG-LGAPADEVLAYLRD 398


>gi|194216871|ref|XP_001917615.1| PREDICTED: alanyl-tRNA synthetase domain containing 1 [Equus
           caballus]
          Length = 524

 Score =  177 bits (449), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 182/458 (39%), Gaps = 42/458 (9%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPP--- 481
           + +     L     + +W S+        + G + +  ++        +KV  +KPP   
Sbjct: 64  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEVELAQVEHYAELLKKVSTKKPPPAM 122

Query: 482 --IDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
             +D    V S V  +  +G    +E +SG  ++VV + T  + E GGQ  D G   G  
Sbjct: 123 DDLDFATTVVSCVPELQTEGSNGKKEVLSG--LQVVLEDTLLFPEGGGQPDDHGTIDG-- 178

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + +  V ++            +  L     + + +D++ R      HS  HL+     
Sbjct: 179 --VPVLRVTRRGAQADH----FTQTPLTPGSEVQVRVDWERRFDHMQQHSGQHLITAVAD 232

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
            + G   +          LR  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +
Sbjct: 233 HLFGLKTTSW----ELGRLRSVIELDSPSVTTEQVAAIEQSVNEKIRDRLPVNVRELSLD 288

Query: 658 DAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           D          L   +   +RVV+++  D     S +C GTHVS+  ++ ++ I++    
Sbjct: 289 DPEVEQVRGRGLPDDHAGPIRVVTIKGVD-----SNMCCGTHVSNLSDLQVIKILATEKG 343

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IH 774
           +     +  + G R    +       K+L S LK    + V  V+++    + LQ   ++
Sbjct: 344 KKNKTNLIFLAGNRVLKWMERSHGTEKALTSLLKCGAEDHVEAVKKLQNSTKLLQKSNLN 403

Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
             R L ++V     +       ++    E DS+ +  + + +  +      + + +  EK
Sbjct: 404 LLRDLAVHVAHSLRNSPDWGGVVALHRKEGDSEFMNIIANEIGSEET---FLFLTVGDEK 460

Query: 835 KASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGR 871
            A + ++          AV+ L    A++L G G G +
Sbjct: 461 GAGLFLLAGPAE-----AVETLGPRVAEILEGKGAGKK 493


>gi|240102207|ref|YP_002958515.1| Alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           gammatolerans EJ3]
 gi|239909760|gb|ACS32651.1| Alanyl-tRNA synthetase-related protein (C-terminus) [Thermococcus
           gammatolerans EJ3]
          Length = 405

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 151/384 (39%), Gaps = 45/384 (11%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G +V ++ D+T FY E GGQ  D G   G+G R+ +  V  K +    H   +E      
Sbjct: 26  GDRVRLLLDRTIFYPEGGGQPSDRGFIEGNGFRVLVDRVYGKDK--IWHEGKLEGRFPEK 83

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + LT+D++ R +    H+  H+L   +  +LG+  +  G  I P+  + ++ +   +
Sbjct: 84  GDEVRLTLDWEWRYENMRAHTGQHILSAVIKGLLGADTT--GFQIFPEHGKIEIDYPGEL 141

Query: 628 TSAELKSIEDNVNDIIAQN-LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +  IE   N+II  +    V         ++      L  K    +R+V +     
Sbjct: 142 SWELVNEIERKTNEIIWGDVEVEVEVYEELPGELSERLRKPLSEKVKPPIRIVKI----- 196

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G      CGGTHV ST E+ +L +++       + RIE  TG RA   L    E LK   
Sbjct: 197 GTVDVTPCGGTHVRSTREVGVLKVLNFYRKSRKLWRIEFATGNRALRALN---EILKDYW 253

Query: 747 SFLKVSQGNVVGRVEEIWEEY---------RKLQLIHAKRKL---QLNVEDLSCHKIADV 794
             L      +  +   + E            + +    +R+L   +      +  KI  V
Sbjct: 254 GSL----EEMPNKNRPLRERVIELRSELEKLEEEKSKLRRELWRWKAEALIKNARKIDGV 309

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             ++ ++ E   K+ ++    L +     ++++ G +      V+   +E L    +   
Sbjct: 310 RVIT-LVEEWPMKDAQAFAIYLVEHNPGTVVLIAGEN-----YVVFAKSEKL--DVSMRS 361

Query: 855 LARLSAKVLGG--------GGGGG 870
           L R     +GG          GGG
Sbjct: 362 LLRAVLAEVGGGGGGSDNLAKGGG 385


>gi|291527690|emb|CBK93276.1| Alanyl-tRNA synthetase [Eubacterium rectale M104/1]
          Length = 424

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 157/418 (37%), Gaps = 56/418 (13%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV----- 560
              ++ +++ +QT F+ E GGQ  D G   G     ++ DVQ K  G+  H   +     
Sbjct: 31  ADDKQFDIILNQTLFFPEEGGQSPDMGILGG----YRVVDVQIK-NGVITHTVDISADDC 85

Query: 561 -------------------------ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                                    E+  +   + +   ID+Q+R      HS  H+   
Sbjct: 86  CIMGKEEAQTEKKTDGQITGMECASEKVEIAAGVHVHGKIDWQHRFYNMQQHSGEHIFSG 145

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            +    G      G  ++   +  D   S  I+   +  +E  VN  I++N+P+      
Sbjct: 146 IVHRRFGF--ENVGFHLSDSVVTMDF--SGVISPENIAEVEHEVNVAISKNIPIEVTYPP 201

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           R++       + +  +   +VR+V+V       +    C   HV  TGEI +L +++  +
Sbjct: 202 RDELAQLEYRSKI--EIEGQVRIVTVPG-----YDVCACCAPHVKRTGEIGMLKVMNYQN 254

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
            + G+ RI  + G RA      + + +  L      +Q  +V  V ++    + L+    
Sbjct: 255 YKGGV-RISILCGFRALEAFRQKCDIISELMGIFTTNQEAIVDNVTKLKAVNQSLKSELG 313

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
             K  L ++       AD +        +D+   ++ ++ L +K  SG       + E  
Sbjct: 314 TAKSAL-LDYKVAELPADTDNAVLFEDGIDTNTARNCVNGLVEK-YSGFSAFFTGNDEAG 371

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG-NKADQAIAGV 892
            S +I  +++      A  L         G  GGG+P M Q       ++ ++ +  V
Sbjct: 372 YSFIIG-SKNADCNTVAAALRNKL-----GARGGGKPVMVQGSVKAVKSEIEEVLKEV 423


>gi|148230330|ref|NP_001080266.1| alanyl-tRNA synthetase domain containing 1 [Xenopus laevis]
 gi|82176835|sp|Q7ZYJ9|AASDB_XENLA RecName: Full=Alanyl-tRNA editing protein Aarsd1-B; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein
           1-B
 gi|27696840|gb|AAH43754.1| Aarsd1-a protein [Xenopus laevis]
          Length = 412

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 141/367 (38%), Gaps = 33/367 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+   T  + E GGQ  D G        + +  V ++        A      L     
Sbjct: 40  FNVLLKDTVLFPEGGGQPDDRGFI----GEVPVLRVIRQGPDAVHFVAS----PLDPATE 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITS 629
           +++ ID+  R      HS  HL+     ++ G   +           R  +    P +T+
Sbjct: 92  VLVKIDWNRRFDHMQQHSGQHLVTAIADSLYGFKTTSW----DLGRQRSVIELDTPLVTA 147

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGV 688
            ++++IE   N  I +++PV  R++  +D       +  L   +   VR++ +E  D   
Sbjct: 148 EQVEAIEKVANQKIREHVPVHVRLITVDDPEFDMVRSRGLPDDHAGPVRIIDIEGVDAN- 206

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               +C GTHV +  ++ ++ I+     +     +  ++G+R   ++       K+L S 
Sbjct: 207 ----MCCGTHVRNLSDLQMIKILGTEKGKKNKTNLIFLSGERVLKYVSRSYNTEKTLTSL 262

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           LK      +  V+++ +  + LQ  +    R L +   +    K     F S    E D+
Sbjct: 263 LKNGPEEHIEAVDKLQKSVKALQKNNLTLLRDLAVLTAENFKSKADRGKFFSLHRKEGDN 322

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLG 864
           + +  + + +  +      +L     ++K S   L+     ++++F          ++L 
Sbjct: 323 EFMNIIANEIGTEDT----LLFLTIGDEKTSGLFLLAGPPGIVEKF-----GPRVCEIL- 372

Query: 865 GGGGGGR 871
            G G G+
Sbjct: 373 DGKGAGK 379


>gi|327275562|ref|XP_003222542.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like [Anolis
           carolinensis]
          Length = 542

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 136/368 (36%), Gaps = 28/368 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q   V+ + T  + E GGQ  D G   G    + +  V ++            +  L   
Sbjct: 169 QGYHVILEDTILFPEGGGQPDDRGLMNG----IPVLRVTRQGPDALHFI----QTPLEPG 220

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R      HS  HL+      + G   +          +  D +    +T
Sbjct: 221 SEVQLELDWDRRFDHMQQHSGQHLITALADLMFGFKTTSWELGRQRSTIELDTSS---MT 277

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGG 687
             ++ ++E +VND I   +PVV R     D       +  L   +   VR++S+E  D  
Sbjct: 278 PEQVAALEQSVNDKIRARVPVVVREFAVGDPEVEMVRSRGLPDDHTGPVRIISIEGIDAN 337

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                +C GTHVS+  ++ ++ ++     +     +  + G R    L       K+L S
Sbjct: 338 -----MCCGTHVSNLSDLQVVKLLGTEKGKKNKTNLVFLAGNRVLKTLERNHTTEKALTS 392

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
            LK      V  V+ +    ++LQ  +      L V      K         ++   D  
Sbjct: 393 LLKNGPEEHVEAVKRLQNSLKQLQKNNLNLLRDLAVLTAQSFKNNMAQEPVFVLHRKDGD 452

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLIVVTEDLLDRFNAVDLARLSAKVLGG 865
                M+ +  +I +   ++     ++KA+   L+    + +++     L    A++L G
Sbjct: 453 S--EFMNIIANEIGNEKTLVFLSVGDEKAAGLFLLAGPPETVEK-----LGPRVAELLEG 505

Query: 866 GGGG--GR 871
            G G  GR
Sbjct: 506 KGAGKHGR 513


>gi|241709472|ref|XP_002403411.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215505071|gb|EEC14565.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 587

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 17/235 (7%)

Query: 167 GPCGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223
           GPCGP +EI  D  E      P     +      +E+WNLVF+QF +        LP   
Sbjct: 2   GPCGPSTEIHIDLAEGGGPLKPATLRVNAGSGDLVELWNLVFIQFNRDAGGNLSSLPNKH 61

Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-------YEGNNIVNHRVIV 276
           +DTGMGLER+  VLQ   +NYD DLF  L+ A ++   +         + +  V +R++V
Sbjct: 62  VDTGMGLERLTAVLQNVKSNYDTDLFSPLLSALQKSARVAPYRGLVGPDASVDVAYRIVV 121

Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335
           DH R  +  I+DG+LP +   G  LRR++R+A   A + L   + ++  L  ++ T +G 
Sbjct: 122 DHARMFTVAISDGVLPEHFDAGNKLRRVIRKASHAAIKHLKCDQGVLASLADSVYTVLGE 181

Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            YP L     L++  +  E++R+   + +     +  L      + ++      +
Sbjct: 182 FYPNL--DLELVKNIVNLEEDRYLSQMSKA----EAALHDAKPSKEISATHCLNM 230



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 12/215 (5%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           SATH L+ AL  +LGS   Q  S +    LRFD    K +T+ +++ ++D  N +I +N 
Sbjct: 223 SATHCLNMALRAVLGS-TEQRSSLVDSRHLRFDFLSKKGLTTDQVQRVQDCCNAMIRENH 281

Query: 648 PVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            V   I+ + +A+       +   +Y   V V+++   D  + S  LC GTHVSS  ++ 
Sbjct: 282 DVQRVILPKSEALELPQLVTVANEEYPTSVSVITIGKNDN-IVSRELCCGTHVSSLSDLG 340

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARS------HLMGQDEKL-KSLASFLKVSQGNVVGR 759
              + S  S+ + +R + A+ G  A +      H+  Q + L + +A+ +K+   + V  
Sbjct: 341 EFVLTSHRSVGSMVRSVCAVAGPLAVNVNSRDQHVAEQIQLLAQEIAALMKLPPDDYVSM 400

Query: 760 V--EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
               E   E R+    +    L     +    K+ 
Sbjct: 401 ASCREKLHEIRRFIADNTVSLLLQRTAEEKLEKLK 435


>gi|57525832|ref|NP_001003572.1| alanyl-tRNA editing protein Aarsd1 [Danio rerio]
 gi|82182671|sp|Q6DEJ5|AASD1_DANRE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|50417382|gb|AAH77118.1| Alanyl-tRNA synthetase domain containing 1 [Danio rerio]
          Length = 412

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 148/396 (37%), Gaps = 41/396 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V    T  + E GGQ  D G   G    + +  V ++               L     
Sbjct: 40  FNVKLKDTILFPEGGGQPDDHGTIGG----VPVLRVLRQGPDAVH----FVSSALEEGQE 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D++ R      HS  HL+     T+ G   +          +  D    KP    
Sbjct: 92  VHIKLDWERRFDHMQQHSGQHLITALADTMFGYKTTSWDLGRQRSSIELDTATVKPG--- 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           E++++E  VN+ I  ++PV   +++ +D A+    +  L   +   +R++ +E  D    
Sbjct: 149 EMEALETAVNEKIRAHVPVTVNLLSIDDPAVEKVRSRGLPDDHAGPIRIIDIEGVDAN-- 206

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+   + ++ I+     +     +  I G R   +        KSL   L
Sbjct: 207 ---MCCGTHVSNLSHLQVIKILGTEKGKKNKTNLIFIAGNRVLKYAEKSYNIEKSLTVLL 263

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           K      V  V+++ +  ++LQ  +    R++ + +      K    +F S    + D++
Sbjct: 264 KTGADEHVDAVDKLQKTVKRLQKSNLTILREMAVLIAQNFKSKPDRGHFFSLHNKDGDNE 323

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK---VLG 864
            +  V + +        ++ + +  EK A + ++   +        ++          L 
Sbjct: 324 FMNIVANEI---GFQDTLIFMTVGDEKGAGLFLIAGPE--------NIVTEVGPRVSELL 372

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAI--AGVASFLKK 898
            G G G+       G    KA+  +  A V + LK+
Sbjct: 373 QGKGAGKA------GRYQGKANSLVKRAEVEALLKE 402


>gi|153007207|ref|YP_001381532.1| threonyl/alanyl tRNA synthetase SAD [Anaeromyxobacter sp. Fw109-5]
 gi|152030780|gb|ABS28548.1| Threonyl/alanyl tRNA synthetase SAD [Anaeromyxobacter sp. Fw109-5]
          Length = 401

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 95/408 (23%), Positives = 154/408 (37%), Gaps = 31/408 (7%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           AIV     V+      +  V+ D+T FY E GGQ  D G   G    + + DV++   G 
Sbjct: 17  AIVTAAREVD-----GRAAVLLDRTAFYPEGGGQPADRGSLGG----VPVVDVRE-LGGE 66

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-----SHVSQN 608
            +H   V  G       +   +D Q RR     H   HLL  A     G      H+ + 
Sbjct: 67  ILH---VLAGPAPAG-KVAGRVDGQRRRDHVQQHHGQHLLSAAFEGARGARTLSFHLGEA 122

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
              I  D        +  +    L+++E   N ++  +LPV  R ++  D  A       
Sbjct: 123 TCTIDLD------APAASLDEGALRAVEAAANALVFADLPVEARELSPADLDALPLRK-- 174

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                 RV VV      GG+  ++ CGGTH   TGE+  + ++      AG  R+E + G
Sbjct: 175 APTKGARVVVVGEAGTPGGIVDASPCGGTHPRRTGEVGAIAVLGVQKWGAG-SRVEFVCG 233

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
            RA + L     +L   A  L+ +   V        E+    +    +  L L   +   
Sbjct: 234 ARAVAALAQARARLGEAARALRCAPAEVPAAAARAAEDGAARRKDVERLALALAATEADR 293

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
              A    +  +I    +     V          G + L+G  ++ +A +     +    
Sbjct: 294 LAAASGGTVRAVIVPPAAGAPAFVKAVAAALAARGRVALLGAVEDGRAHLAFARPKG--S 351

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +  +L R++A  L  G GGG P +AQ  GP   + + A+    + L
Sbjct: 352 GPHLGELVRVAAAALS-GKGGGAPDLAQGSGPEAARLEAALVDAEATL 398


>gi|296201512|ref|XP_002806858.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA editing protein
           Aarsd1-like [Callithrix jacchus]
          Length = 608

 Score =  174 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 184/482 (38%), Gaps = 40/482 (8%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  +         +KV  ++PP  +
Sbjct: 147 KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEVELAHVEHYAELLKKVSTKRPPPAM 205

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +      +  E+  E  +G+K      +VV + T  + E GGQ  D G    D  
Sbjct: 206 DDLDFTTTVVSCRPAELQTEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDDHGTI-NDIP 264

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T   ++A+          +  L     +++ +D++ R      HS  HL+      
Sbjct: 265 VLKVTRRGEQAD-------HFTQTPLEPGSQVLVQVDWERRFDHMQQHSGQHLITAVADH 317

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +     +           R  +    P +T+ ++ +IE +VN+ I   LPV  + ++ +D
Sbjct: 318 LFKLKTTSW----ELGRFRSVIELDSPSVTAEQVAAIEQSVNEKIRDRLPVNVQELSLDD 373

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                     L   +   +RVV+++  D     S +C GTHVS+  ++ ++ ++     +
Sbjct: 374 PEVEQVRGRGLPDDHAGPIRVVTIKGVD-----SNMCCGTHVSNLSDLQVIKMLGTEKGK 428

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                +  + G R    +       K+L + LK    + V  V+++    + LQ  +   
Sbjct: 429 KNKTNLIFLAGNRVLKWMGRSHGTEKALTALLKCGAEDHVEAVKKLQNSTKLLQKNNLSL 488

Query: 778 KLQLNVEDLS-CHKIADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L V          D   +  +   E+ S     + + +  +     ++ + +  EK 
Sbjct: 489 LRDLAVHSAHRLRNSPDWGGVVLLHRXEIRSXXXXIIANEIGSEET---LLFLTVGDEKG 545

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           A + ++    +     AV+ L    A+VL G G G +    Q      ++  +A A +  
Sbjct: 546 AGLFLLAGPPV-----AVETLGPRVAEVLEGKGAGKKGRF-QGKAMKMSRRPEAQALLQD 599

Query: 895 FL 896
           ++
Sbjct: 600 YI 601


>gi|126307890|ref|XP_001362776.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           isoform 2 [Monodelphis domestica]
          Length = 415

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 142/388 (36%), Gaps = 25/388 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G        + +  V ++  G    H ++    L     
Sbjct: 44  YHVVLEDTLLFPEGGGQPDDRGSIDN----IPVLRVTRR--GSEADHFLLT--PLAPGSQ 95

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT-S 629
           + + +D++ R      HS  HL+      + G   +           R  +    P+   
Sbjct: 96  VQVQLDWERRFDHMQQHSGQHLITAVADHLFGLKTTSW----ELGRCRSTIELDSPMVLP 151

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGV 688
            ++ +IE +VN+ I   LPV+ + ++ +D          L   +   +RV+++E  D   
Sbjct: 152 EQIVAIEQSVNEKIRSRLPVIVKELSPDDPEVEKVRGRGLPDDHAGPIRVITIEGVD--- 208

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             S +C GTHV +  ++ ++ I+     +     I  +TG R    +       K+L S 
Sbjct: 209 --SNMCCGTHVGNLSDLQVIKILGTEKGKKNKTNIVFLTGNRVLKWMERSHGSQKALTSL 266

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           LK         V+++    + LQ  +      L V      + +       ++   D   
Sbjct: 267 LKCGVEEHAEAVQKLQNSAKLLQKNNLNLLRDLAVLTAHSLRDSPDRGGMIVLHRKDGDS 326

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
               M+ +  +I     +L     ++K + L +    L     AVD+       L  G G
Sbjct: 327 --EFMNIIANEIGIEDTLLFLTVGDEKGAGLFL----LAGPIEAVDMLGPRVAELLQGKG 380

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G+    Q      ++  +  A +  +L
Sbjct: 381 AGKKGCFQGKATKLSRRVEVQALLQDYL 408


>gi|183011972|gb|ACC37915.1| alanyl-tRNA synthetase [Themira annulipes]
          Length = 147

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 64/147 (43%), Positives = 85/147 (57%), Gaps = 10/147 (6%)

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120
           V   QKC+RAGGKHNDLD+VG+   HHTFF MLGN+SFG YFK      AW+ LT+   L
Sbjct: 3   VANTQKCIRAGGKHNDLDDVGKDVYHHTFFXMLGNWSFGDYFKXEICTWAWEFLTERLCL 62

Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172
            + RLY+T +  DE        E  ++W ++ G+  + I+     DNFW M ETGPCGPC
Sbjct: 63  PKDRLYVTYFGGDEASGLEPDFECKQIWTEL-GVRPEHILPGNMKDNFWEMGETGPCGPC 121

Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIE 199
           SE+ FD+           + +    +E
Sbjct: 122 SELHFDRIGG-RSVPELVNMDDPDVLE 147


>gi|320335199|ref|YP_004171910.1| Alanyl-tRNA synthetase, class IIc [Deinococcus maricopensis DSM
           21211]
 gi|319756488|gb|ADV68245.1| Alanyl-tRNA synthetase, class IIc [Deinococcus maricopensis DSM
           21211]
          Length = 394

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 148/393 (37%), Gaps = 23/393 (5%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            +  +   V  D T FY E GGQ  D G     G  +++ DVQ++A G+  H   V+   
Sbjct: 20  VMEVRDGAVALDGTCFYPEGGGQNADAGTLAWAGGEVRVVDVQREA-GVVWHR--VDGPA 76

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                +++  ++   R +    HS  HLL  A   I         + ++       +   
Sbjct: 77  PAVGEAVMGRVEAGRRWRHMERHSGEHLLAQAFVRIHPRLRV---AAVSMRSAECTLDLE 133

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
              T AE+++ E  + ++I ++L + T  +   +  +         +    VR+V    E
Sbjct: 134 GDPTEAEVRAAEALLREVIRRDLRLETVTVPESELGSYPLRR--PPQVRGDVRLVMFRDE 191

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            G +   + CGGTHV     +  + ++    +R G+ R+  + G+ A+++L G     ++
Sbjct: 192 AGELFDVSACGGTHVPRAAVVAPVVVLRTERVRGGLTRVVFMAGEEAQAYLGGVYRDARA 251

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           LA         +  RVE +  E   L     + + QL            +N        +
Sbjct: 252 LAGTFSTGVEGLSERVEALRAERDALSAELKQARTQLAAALTLQVTPESLNGAPVRFVAL 311

Query: 805 -DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D++ L  V++A   +      ++V  + + +  V     +    +   V L     +  
Sbjct: 312 PDARLLPDVLEATPAQE-----VVVAFAPDGRVGVGSARADVQAGQALKVALGASGGRGG 366

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           G       P  AQ   P+    D  +    + L
Sbjct: 367 GR------PDRAQGQTPD---VDAFLRAARTHL 390


>gi|183011918|gb|ACC37888.1| alanyl-tRNA synthetase [Dicranosepsis olfactoria]
          Length = 148

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 66/134 (49%), Positives = 85/134 (63%), Gaps = 9/134 (6%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ 
Sbjct: 6   EMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEF 65

Query: 114 LTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M E
Sbjct: 66  LTERLALPKDRLYVTYFGGDEASGLEPDYECKQIWTDL-GLKPEHILPGSMKDNFWEMGE 124

Query: 166 TGPCGPCSEIFFDQ 179
           TGPCGPCSE+ FD+
Sbjct: 125 TGPCGPCSELHFDR 138


>gi|77407177|ref|ZP_00784160.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77174212|gb|EAO77098.1| alanyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 164

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 85/130 (65%), Gaps = 6/130 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
           + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5   SSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63  TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120
             QK +R     ND++NVG+T RHHT FEMLGNFS G YF++ AI+  ++LLT  + FD 
Sbjct: 65  NAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDF 120

Query: 121 DQRRLYITVY 130
            + +LY+T Y
Sbjct: 121 PKDKLYMTYY 130


>gi|310821145|ref|YP_003953503.1| threonyl/alanyl tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394217|gb|ADO71676.1| Threonyl/alanyl tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 400

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 137/359 (38%), Gaps = 38/359 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           G +V  A       ++ D+T FY EAGGQ+ D G   G      + DVQ    G+  H  
Sbjct: 19  GRVVAHAAWNGAPSIILDRTAFYPEAGGQMADRGVLGG----AVVRDVQVDDAGLVHHVL 74

Query: 559 IVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITP 614
            +  G  +      L   ID   RR     H+  H+L  AL  +  +H   +  G  +  
Sbjct: 75  ELSEGGALPEVGAELPGEIDRVRRRLHMALHTGQHMLSRALVDVANAHTVSSRLGETLCT 134

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
             +  DV   + +        E+ VN +I  ++ +       E+  A         K  +
Sbjct: 135 IDVDLDVLDERKV-----AEAEEFVNAVIEDDVAIRAFFPTPEELAALPLRR--QPKVTE 187

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +RVV ++         + CGGTH + + ++ ++ ++       G  R+    G+RARS 
Sbjct: 188 NIRVVQIDG-----FDVSPCGGTHCTRSAQVGMIRVLGVER-NKGKGRVLFSAGRRARSE 241

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL----------IHAKRKLQLNVE 784
           L  +   L+ L+       G V   ++++  E  + +            H   +L   +E
Sbjct: 242 LWAEAGTLRGLSRAFTCGPGEVPTSIDKLRRELTEAREALGAARARLAEHTAAELASALE 301

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
               H+      +  ++     + L+++   L  +    +++L G   E    ++   +
Sbjct: 302 QSPEHR------VVAVVEGASPESLRAIAARLTAR-PEAVVLLAGQGPEGLPVLIARGS 353


>gi|220919455|ref|YP_002494759.1| phosphoesterase DHHA1 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957309|gb|ACL67693.1| phosphoesterase DHHA1 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 406

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 145/395 (36%), Gaps = 25/395 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +  +  +V       +  +V D+T FY E GGQ  D G   G      + DVQ+  +G  
Sbjct: 13  LTFEARVVAVRTLAGRPALVLDRTAFYPEGGGQPADRGRLGG----AAVVDVQE-VDGEV 67

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H   +E         +   +D   RR     H   HLL  A     G+H       +  
Sbjct: 68  LH--ALEGTPPDAGAPVPGEVDAARRRDHLQQHHGQHLLSAAFEATAGAHTVS--FHLGA 123

Query: 615 DGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           +    D+      +  A L++ E   ND++ ++LPV  R     +  A            
Sbjct: 124 ETCTIDLDAPPAGLGEARLRAAEARANDLVFRDLPVTARDFAPAELAALPLRKAPE---K 180

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
               VV  +   G V  ++ CGGTH   TG +  + ++      AG  R+E + G RA  
Sbjct: 181 GARIVVVGDLARGEVVDASPCGGTHPRRTGAVGAVAVLGAQKWGAG-TRVEFVCGARAVR 239

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCH 789
            L     +L + A+ L+ +   V      +  E     + L  + A           +  
Sbjct: 240 ALAEARGRLAAAAASLRCAPAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLAAAQ 299

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
               V  +    +   +  L++V          G    +G  +E +A +      D    
Sbjct: 300 PAGAVRAVLAPPAPGAAGYLRAVAAG---LAARGRAAFLGAEEEGRAHLAFARPRDTGPG 356

Query: 850 FNAVDL---ARLSAKVLGGGGGGGRPHMAQSGGPN 881
              VD+    R +A  L GG GGG P +AQ  GP+
Sbjct: 357 VTGVDMGARVREAAARL-GGKGGGAPDLAQGSGPD 390


>gi|118566844|gb|ABL01741.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 140

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/134 (48%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC 330
           + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ +  +LG  E     L+  L 
Sbjct: 8   SLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLI 67

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
             MGSA  EL + +  +E+ L++E+E+F +TL+RGL LLD  L+ L + + L+G+ AF+L
Sbjct: 68  EVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKL-QGDTLDGETAFRL 126

Query: 391 YDTHGLPLDIMQDI 404
           YDT+G P+D+  D+
Sbjct: 127 YDTYGFPVDLTADV 140


>gi|218661202|ref|ZP_03517132.1| alanyl-tRNA synthetase [Rhizobium etli IE4771]
          Length = 113

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/104 (73%), Positives = 87/104 (83%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK  Y  
Sbjct: 1   MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKE 104
            TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YF+ 
Sbjct: 61  ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFRR 104


>gi|183011984|gb|ACC37921.1| alanyl-tRNA synthetase [Themira minor]
          Length = 144

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/134 (48%), Positives = 85/134 (63%), Gaps = 9/134 (6%)

Query: 54  EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113
           E   +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK      AW+ 
Sbjct: 2   EMSKWVRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWEF 61

Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165
           LT+   L + RLY+T +        + D E  ++W ++ GL  + I+  +  DNFW M E
Sbjct: 62  LTERLCLPKDRLYVTYFGGDXASGLEPDLECKQIWTEL-GLKPEHILPGSMKDNFWEMGE 120

Query: 166 TGPCGPCSEIFFDQ 179
           TGPCGPCSE+ FD+
Sbjct: 121 TGPCGPCSELHFDR 134


>gi|284172780|ref|YP_003406162.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284017540|gb|ADB63489.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 403

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 148/411 (36%), Gaps = 41/411 (9%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E      S     V  ++T FYAE GGQ  D G   G    + + DVQ +       H +
Sbjct: 18  EFEATVRSVDGTNVRLEETYFYAEGGGQPADRGTLNG----IDVVDVQTRDGETV--HTL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                  T   +  +ID + R      H+A+H+L+ A   +   H    G  I  +  R 
Sbjct: 72  ATAPDFETGDDVTGSIDDEFRTYCMRAHTASHVLYGAGRELFDDH-GYGGFDIDAEKGRI 130

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT----KYNDR 675
           D    +        +++  VN+++ ++  V  R M+   A       +       +  D 
Sbjct: 131 DFETDRDPDEVNALTLQRMVNEVVWESRDVSWREMDAAQARDRDEI-VFNETGAAETTDT 189

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRVV +          A CGGTHV +T EI  + ++  S+  +G+ R+E   G  A    
Sbjct: 190 VRVVEI-----DDWDIAACGGTHVENTVEIGPVKVLEVSNPGSGLVRVEYAVGPTAVRAQ 244

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIAD 793
           + +       A  L+ S   +  R   + EE   L+      + +L  E L         
Sbjct: 245 LDETRAATRAARTLETSVEELPERATAVVEENATLEAEVDALRDRLLEERLESLGDDTVS 304

Query: 794 VNFMSHIISEVDSKEL--KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT-----EDL 846
            +    ++ E+D   +    V D +++       ++        A V++  T      +L
Sbjct: 305 KDGKEWVVGELDIDGIGPNDVSDRVRELAGDIGDVVALTGVNGSAFVVVGTTGETDASEL 364

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +D   A                   P  AQ GG      D   A V  +L+
Sbjct: 365 VDDVTATFGGGGGGG----------PTFAQGGG-----LDDEPAAVVDYLR 400


>gi|122889668|emb|CAM14331.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|123236422|emb|CAM21015.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 543

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 182/482 (37%), Gaps = 40/482 (8%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR---KVLCQKPPIDL 484
           + +     L     + +W S+        + G D +  ++         KV  ++PP  +
Sbjct: 82  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDDEVELAQVEHYAELLNKVSTKRPPPAM 140

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  +A  G+K       VV + T  + E GGQ  D G    D  
Sbjct: 141 DDLDFTTTVVSCSPAELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQPDDRGTI-NDIS 199

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T    +A+             L     + + +D++ R      HS  HL+      
Sbjct: 200 VLRVTRRGAQAD-------HFTESPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVADL 252

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           + G   +          LR  +    P +T+ ++ +IE +VN  I   LPV  R ++ +D
Sbjct: 253 LFGLKTTSW----ELGRLRSVIELDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDD 308

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                     L   +   +RVV++E  D     S +C GTHVS+  ++ ++ I+     +
Sbjct: 309 PEVEQVRGRGLPDDHAGPIRVVTIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGK 363

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                +  + G R    +       K+L S LK    + V  V+++    + LQ  +   
Sbjct: 364 KNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCGVEDHVEAVKKLQNATKLLQKNNLNL 423

Query: 778 KLQLNVEDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
              L V      + +      ++    E DS+ +  + + +  +     ++ + +  EK 
Sbjct: 424 LRDLAVHTAHSLRSSPAWGGVVTLHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKG 480

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           A + ++          AV+ L    A+VL G G G +    Q      ++  +A A +  
Sbjct: 481 AGLFLLAGPAE-----AVETLGPRVAEVLEGKGAGKKGRF-QGKATKMSRRAEAQALLQD 534

Query: 895 FL 896
           ++
Sbjct: 535 YV 536


>gi|47226041|emb|CAG04415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 402

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 137/367 (37%), Gaps = 33/367 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V    T  +   GG   D G  IGD   L++T    +A    VH        L     
Sbjct: 40  FNVTLQDTILFPVGGGHPDDHG-LIGDVPVLRVTRQGPEA----VHFV---SSPLEEGQE 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D+  R      HS  HL+     ++ G   +          +  D    KP    
Sbjct: 92  VRVKVDWDRRFDHMQQHSGQHLITALADSLFGYKTTSWEHGRQRSNIELDTPSFKPG--- 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +L+++ED VN+ I  ++PV  + ++ +D A+    +  L   +   +R+V +E  +    
Sbjct: 149 QLQALEDAVNEKIRAHIPVTVQFLSLDDPAVEKVRSRGLPEDFAGPIRIVDIEGVEAD-- 206

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              +C GTHVS+   + ++ +V     +     +  + G R   +      K +SL S L
Sbjct: 207 ---MCCGTHVSNLSHLQVIKLVGTEKGKKNKTNLIFLVGNRVLKYAEKSYNKDRSLVSLL 263

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           K      V  V+++ +  R L   +    R++ + +           NF S    E D++
Sbjct: 264 KTGPDGHVEAVDKLQKSVRLLNKANLSLLREMAVLIAQNFVSSPERSNFFSLHKKEGDNE 323

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV---LG 864
            +  + + L  +     +  + + +EK   + ++             L          + 
Sbjct: 324 FMNIIANELNTEET---LAFLTVGEEKGPGLFLLAGPS--------KLVAELGPQVLEIL 372

Query: 865 GGGGGGR 871
            G G G+
Sbjct: 373 QGKGAGK 379


>gi|122889667|emb|CAM14330.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|123236421|emb|CAM21014.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 525

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 177/481 (36%), Gaps = 38/481 (7%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR---KVLCQKPPIDL 484
           + +     L     + +W S+        + G D +  ++         KV  ++PP  +
Sbjct: 64  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDDEVELAQVEHYAELLNKVSTKRPPPAM 122

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  +A  G+K       VV + T  + E GGQ  D G    D  
Sbjct: 123 DDLDFTTTVVSCSPAELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQPDDRGTI-NDIS 181

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T    +A+             L     + + +D++ R      HS  HL+      
Sbjct: 182 VLRVTRRGAQAD-------HFTESPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVADL 234

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           + G   +          LR  +    P +T+ ++ +IE +VN  I   LPV  R ++ +D
Sbjct: 235 LFGLKTTSW----ELGRLRSVIELDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDD 290

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                     L   +   +RVV++E  D     S +C GTHVS+  ++ ++ I+     +
Sbjct: 291 PEVEQVRGRGLPDDHAGPIRVVTIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGK 345

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                +  + G R    +       K+L S LK    + V  V+++    + LQ  +   
Sbjct: 346 KNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCGVEDHVEAVKKLQNATKLLQKNNLNL 405

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
              L V      + +        +   +       M+ +  +I S   +L     ++K +
Sbjct: 406 LRDLAVHTAHSLRSSPAWGGVVTLHRKEGDS--EFMNIIANEIGSEETLLFLTVGDEKGA 463

Query: 838 --VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
              L+    + ++      L    A+VL G G G +    Q      ++  +A A +  +
Sbjct: 464 GLFLLAGPAEAVET-----LGPRVAEVLEGKGAGKKGRF-QGKATKMSRRAEAQALLQDY 517

Query: 896 L 896
           +
Sbjct: 518 V 518


>gi|320583028|gb|EFW97244.1| Alanyl-tRNA synthetase, putative [Pichia angusta DL-1]
          Length = 384

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 141/353 (39%), Gaps = 32/353 (9%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            +G K EV  + T  + E GGQ  DTG        L++  V +   G+   H + +   L
Sbjct: 27  KNGNKYEVELEDTVLFPEGGGQPSDTGKISSGSDILEVESVIR--AGLKALHLVDK--PL 82

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
            T   + L++D++ R      H+  HLL   L       +S N        +   +   +
Sbjct: 83  ETGAPVNLSVDWERRFDHMQQHTGQHLLSAVLDKRDLPTLSWN-----MGDMINYIEIPR 137

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T  E + +   VN  I QNLP+   +    +            +    +R++ +    
Sbjct: 138 KLTDTEREEVTKEVNSYITQNLPISVEVPPDREV----------DEVKGVMRIIHI---- 183

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G   S  C GTH+ ++G+I  + ++++ + + G  R+  I G R           L++L
Sbjct: 184 -GDLDSNACCGTHLKNSGQIKGIVLLNQIAGKGGNSRLNFIAGDRIFKFAETSHSILRAL 242

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            S   V    +V +V ++    ++LQ       ++L L        K  +   +    ++
Sbjct: 243 NSATSVQSEQLVDKVNDLVTATKRLQNRQSTLLKELALLTAADLKTKAGEKKTVFFHRAD 302

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV-----VTEDLLDRFN 851
           V    L  +   L+ +     ++L G  K+  A+++       V+++L +  +
Sbjct: 303 VGLDFLNQMFKELKDQ-PGTFVLLSGEGKDGGAALVFGEDTEQVSKELKETLS 354


>gi|119581310|gb|EAW60906.1| alanyl-tRNA synthetase domain containing 1, isoform CRA_d [Homo
           sapiens]
          Length = 536

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 150/394 (38%), Gaps = 32/394 (8%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  +         +KV  ++PP  +
Sbjct: 125 KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEMELAHVEHYAELLKKVSTKRPPPAM 183

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  E  +G+K      +VV + T  + E GGQ  D G    D  
Sbjct: 184 DDLDFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTI-NDIS 242

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T   ++A+          +  L     +++ +D++ R      HS  HL+      
Sbjct: 243 VLRVTRRGEQAD-------HFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADH 295

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +     +           R  +    P +T+ ++ +IE +VN+ I   LPV  R ++ +D
Sbjct: 296 LFKLKTTSW----ELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 351

Query: 659 AI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                 +   L   +   +RVV++E  D     S +C GTHVS+  ++ ++ I+     +
Sbjct: 352 PEVEQVSGRGLPDDHAGPIRVVNIEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGK 406

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                +  ++G R    +       K+L + LK    + V  V+++    + LQ  +   
Sbjct: 407 KNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNL 466

Query: 778 KLQLNVEDLSCHKI----ADVNFMSHIISEVDSK 807
              L V      +       V  +  +   ++ K
Sbjct: 467 LRDLAVHIAHSLRNSPDWGGVVILHRVAEVLEGK 500


>gi|126307888|ref|XP_001362694.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           isoform 1 [Monodelphis domestica]
          Length = 546

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 142/388 (36%), Gaps = 25/388 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV + T  + E GGQ  D G        + +  V ++  G    H ++    L     
Sbjct: 175 YHVVLEDTLLFPEGGGQPDDRGSIDN----IPVLRVTRR--GSEADHFLLT--PLAPGSQ 226

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT-S 629
           + + +D++ R      HS  HL+      + G   +           R  +    P+   
Sbjct: 227 VQVQLDWERRFDHMQQHSGQHLITAVADHLFGLKTTSW----ELGRCRSTIELDSPMVLP 282

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGV 688
            ++ +IE +VN+ I   LPV+ + ++ +D          L   +   +RV+++E  D   
Sbjct: 283 EQIVAIEQSVNEKIRSRLPVIVKELSPDDPEVEKVRGRGLPDDHAGPIRVITIEGVD--- 339

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             S +C GTHV +  ++ ++ I+     +     I  +TG R    +       K+L S 
Sbjct: 340 --SNMCCGTHVGNLSDLQVIKILGTEKGKKNKTNIVFLTGNRVLKWMERSHGSQKALTSL 397

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           LK         V+++    + LQ  +      L V      + +       ++   D   
Sbjct: 398 LKCGVEEHAEAVQKLQNSAKLLQKNNLNLLRDLAVLTAHSLRDSPDRGGMIVLHRKDGDS 457

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
               M+ +  +I     +L     ++K + L +    L     AVD+       L  G G
Sbjct: 458 --EFMNIIANEIGIEDTLLFLTVGDEKGAGLFL----LAGPIEAVDMLGPRVAELLQGKG 511

Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896
            G+    Q      ++  +  A +  +L
Sbjct: 512 AGKKGCFQGKATKLSRRVEVQALLQDYL 539


>gi|73965625|ref|XP_537630.2| PREDICTED: similar to CG10802-PA [Canis familiaris]
          Length = 543

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 183/482 (37%), Gaps = 40/482 (8%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  ++        +KV  ++PP  +
Sbjct: 82  KEKVAWPRLTKEDIKPVWLSVDFDNWR-DWEGDEEVELAQVEHYAELLKKVSTKRPPPGM 140

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +      +  E+  E  +G+K      +VV + T  + E GGQ  D G   G   
Sbjct: 141 DDLDFTTTVVSCRPAELETEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDDHGTING--- 197

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +  V ++            +  L     + + +D++ R      HS  HL+      
Sbjct: 198 -ISVLRVTRRGAQADH----FTQTPLAPGTEVQVRVDWERRFDHMQQHSGQHLITAVADH 252

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           + G   +          LR  +    P +T  ++ +IE +VN+ I   LPV  R ++ +D
Sbjct: 253 LFGLKTTSW----ELGRLRSVIELDSPSVTIEQVAAIEQSVNEKIRDRLPVNVRELSLDD 308

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                     L   +   +RVV++E  D       +C GTHVS+  ++ ++ I+     +
Sbjct: 309 PEVEQVRGRGLPDDHAGPIRVVTIENVDAN-----MCCGTHVSNLSDLQVIKILGIEKGK 363

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE--YRKLQLIHA 775
                +  + G R    +       K+L + LK    + V  V+++       +   ++ 
Sbjct: 364 KNKTNLAFLAGNRVLKWMERSHGTEKALTALLKCGVEDHVEAVKKLQNSTKLLQKNNLNL 423

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            R L ++V     +       ++    E DS+ +  + + +  +     ++ + +  EK 
Sbjct: 424 LRDLAVHVAHSLRNSPDWGGVVTLHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKG 480

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           A + ++          AV+ L    A+VL G G G +    Q      +   +A A +  
Sbjct: 481 AGLFLLAGPAE-----AVETLGPRVAEVLEGKGAGKKGRF-QGKATKMSGRAEAQALLQD 534

Query: 895 FL 896
           ++
Sbjct: 535 YI 536


>gi|197124734|ref|YP_002136685.1| phosphoesterase DHHA1 [Anaeromyxobacter sp. K]
 gi|196174583|gb|ACG75556.1| phosphoesterase DHHA1 [Anaeromyxobacter sp. K]
          Length = 406

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 144/395 (36%), Gaps = 25/395 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +  +  +V       +  +V D+T FY E GGQ  D G   G      + DVQ+  +G  
Sbjct: 13  LTFEARVVGVRTLAGRPALVLDRTAFYPEGGGQPADRGRLGG----AAVVDVQE-VDGEI 67

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H   +E         +   +D   RR     H   HLL  A     G+H       +  
Sbjct: 68  LH--ALEGTPPDAGAPVPGEVDAARRRDHLQQHHGQHLLSAAFEATAGAHTVS--FHLGA 123

Query: 615 DGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           +    D+      +  A L++ E   ND++ ++L V  R     +  A            
Sbjct: 124 ETCTIDLDAPPASLGEARLRAAEARANDLVFRDLTVTARDFAPAELAALPLRKAPE---K 180

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
               VV  +   G V  ++ CGGTH   TG +  + ++      AG  R+E + G RA  
Sbjct: 181 GARIVVVGDLARGEVVDASPCGGTHPRRTGAVGAVAVLGAQKWGAG-TRVEFVCGARAVR 239

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCH 789
            L     +L + A+ L+ +   V      +  E     + L  + A           +  
Sbjct: 240 ALADARGRLAAAAASLRCAPAEVPAATARLAAESAQRRKDLDRLAAALAEGEADRLAAAQ 299

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
               V  +    +   +  L++V          G    +G  +E +A +      D    
Sbjct: 300 PAGAVRAVLAPPAPGAAGYLRAVAAG---LAARGRAAFLGAVEEGRAHLAFARPRDAGPG 356

Query: 850 FNAVDL---ARLSAKVLGGGGGGGRPHMAQSGGPN 881
              VD+    R +A  L GG GGG P +AQ  GP+
Sbjct: 357 VTGVDMGARVREAAARL-GGKGGGAPDLAQGSGPD 390


>gi|291406181|ref|XP_002719462.1| PREDICTED: alanyl-tRNA synthetase domain containing 1-like
           [Oryctolagus cuniculus]
          Length = 412

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 151/398 (37%), Gaps = 31/398 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G   G    + +  V ++            +
Sbjct: 35  KEVLSG--FHVVLEDTLLFPEGGGQPDDRGTING----VSVLRVTRRGPQADH----FTQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  TALTPGSQVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSW----ELGRLRSTIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +++ +  +IE +VN+ I   LPV  R ++ ED          L   +   +RV++
Sbjct: 141 LDSPSVSAEQAAAIEQSVNEKIRDRLPVHVRELSLEDPEVEQVRGRGLPDDHTGPIRVIT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           ++  D     S +C GTHVS+  ++ ++ I+     +     +  + G R  S +     
Sbjct: 201 IQGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLSWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSH 799
             K+L + LK    + V  V ++    + LQ  +      L V          D   +  
Sbjct: 256 TEKALTALLKCGAEDHVEAVRKLQNSTKLLQKNNLNLLRDLAVHIAHSLRNSPDWGGVVV 315

Query: 800 II-SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           +   E DS+ +  + + +  +     ++ + +  EK A + ++          AV++   
Sbjct: 316 LHRKEADSEFMNIIANEIGSEET---LLFLTVGDEKGAGLFLLAGPAE-----AVEILGP 367

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +  G G G+    Q      ++  +  A +  ++
Sbjct: 368 RVAEVLEGKGAGKKGRFQGKATKMSRRAEVRALLQDYV 405


>gi|213515028|ref|NP_001133686.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar]
 gi|209154936|gb|ACI33700.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar]
          Length = 408

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 143/367 (38%), Gaps = 30/367 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V    T  + E GGQ  D G  IGD   L++T    +     VH        L     
Sbjct: 40  FNVRLQDTILFPEGGGQPDDHG-LIGDVPVLRVT----RQGAEAVHFV---SSALEVGQE 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITS 629
           + L +D++ R      HS  HL+     ++ G   +           R  +    P +  
Sbjct: 92  VQLKLDWERRFDHMQQHSGQHLVTAIAESMFGYKTTSW----ELGRQRSTIELDTPSMKP 147

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           A+++++E  VN+ I  ++PV  ++++ +D A+    +  L       +R++ +E  D   
Sbjct: 148 AQMEALEAAVNEKIRAHVPVAVQVLSLDDPALEKVRSRGLPDDAAGPIRIIDIEGIDVN- 206

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               +C GTHVS+   + ++ ++     +     +  + G R   +        +SL S 
Sbjct: 207 ----MCCGTHVSNLSHLQVIKLLGTEKGKKNKTNLLFLVGNRVLKYAEKSYSTERSLVSL 262

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           LK    + V  V++I +  + LQ  +    R + + +           NF +    E D+
Sbjct: 263 LKTGPDDHVDTVDKIQKTVKGLQKSNLGLLRDMAVLIAQNFKCNPERGNFFTLHKKEGDN 322

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           + +  + + +        ++ + + +EK   + ++            +L     ++L G 
Sbjct: 323 EFMSIIANEI---GTEETLVFLTVGEEKGPGLFLLAGPS----GKVSELGPRVLEMLQGK 375

Query: 867 GGG--GR 871
           G G  GR
Sbjct: 376 GAGKNGR 382


>gi|301789379|ref|XP_002930107.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA editing protein
           Aarsd1-like [Ailuropoda melanoleuca]
          Length = 599

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 181/482 (37%), Gaps = 40/482 (8%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED---RKVLCQKPPIDL 484
           + +     L     + +W S+        + G + +  ++        +KV  ++PP  +
Sbjct: 138 KEKVAWPRLTKDDIKPVWLSVDFDNWR-DWEGDEEVELAQVEHYAELLKKVNTKRPPPGM 196

Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            +   +         E+  E  +G+K       VV + T  + E GGQ  D G    D  
Sbjct: 197 DDLDFTTTVVSCSPAELQTEGSNGKKEVLSGFHVVLEDTLLFPEGGGQPDDRGTI-NDIS 255

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            L++T    +A+          +  L     + + +D++ R      HS  HL+      
Sbjct: 256 VLRVTRRGAQAD-------HFTQTPLAPGTEVQVRVDWERRFDHMQQHSGQHLITAVADH 308

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           + G   +          +R  +    P +T  ++ +IE +VN+ I   LPV+ + ++ +D
Sbjct: 309 LFGLKTTSW----ELGRVRSVIELDSPSVTVEQVAAIEQSVNEKIRSRLPVIVQELSLDD 364

Query: 659 AIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                     L   +   VRVV++E  D       +C GTHVS+  ++ ++ I+     +
Sbjct: 365 PEVEQVRGRGLPDDHAGPVRVVTIESIDAN-----MCCGTHVSNLSDLQVIKILGVEKGK 419

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE--YRKLQLIHA 775
                +  + G R    L       K+L + LK         V ++       +   ++ 
Sbjct: 420 KNKTNLAFLAGNRVLKWLERSHGTEKALTALLKCGAEEHAEAVRKLQNSTKLLQKNNLNL 479

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            R L ++V     +       ++    E DS+ +  + + +  +     ++ + +  EK 
Sbjct: 480 LRDLAVHVAHSLRNSPDWGGVVTLHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKG 536

Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           A + ++          AV+ L    A+VL G G G +    Q      ++  +  A +  
Sbjct: 537 AGLFLLAGPAE-----AVETLGPRVAEVLEGKGAGKKGRF-QGKATRMSRRAEVRALLQD 590

Query: 895 FL 896
           ++
Sbjct: 591 YI 592


>gi|154249461|ref|YP_001410286.1| threonyl/alanyl tRNA synthetase SAD [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153397|gb|ABS60629.1| Threonyl/alanyl tRNA synthetase SAD [Fervidobacterium nodosum
           Rt17-B1]
          Length = 373

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 140/370 (37%), Gaps = 36/370 (9%)

Query: 506 VSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
               K       +PFY +  GGQLGD G   G     ++  V++  E I           
Sbjct: 19  NKDGKYYAYAKISPFYPDWKGGQLGDRGFING----AKVLSVKETEEWIIH----ELDKP 70

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +   +   + ID   R+ ++  H+  H+L  A   +  + +   G  +  +    D+   
Sbjct: 71  IELGI-YEVQIDENRRKDIAQQHTGQHILSAAFIHV--AEIETVGFHMGEEYSTIDLDIP 127

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             I    L  +E+  N II  N+ +   I +   A        L  K  + VR++ +   
Sbjct: 128 Y-IEPDVLNEVEELSNQIIQSNIQIEEIITDVNGANTYPLRKKLSDKIKEEVRLIKI--- 183

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G    + CGG H   TGE+ L+ I+    ++  + R+ A++G RA  +    +  LK 
Sbjct: 184 --GDFDISACGGFHTDYTGEVGLIKIIDTEKVKGNLTRVYAVSGMRALKYFQKYNSVLKD 241

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           L+  L  S   +  R +++  + R+  L  +K   +      +  +   + ++       
Sbjct: 242 LSKLLTSSIDELNLRTQKLLNQVREQALTLSKLSEEYAKLLATNLQKEGLIYLEGYYEV- 300

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
               L  ++D     + + I +      + +  ++         + N  D+ +   +   
Sbjct: 301 -GNFLWKILD-----LSNAIFVYF----DGEKYIIAS------KKHNVKDVIKALVEN-Y 343

Query: 865 GGGGGGRPHM 874
           GG GGG+   
Sbjct: 344 GGKGGGKEDF 353


>gi|149239556|ref|XP_001525654.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451147|gb|EDK45403.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 439

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 147/398 (36%), Gaps = 25/398 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           K  V F+ T  + E GGQ  D G     DG   +I +V            IVE+  +   
Sbjct: 52  KYGVEFEDTILFPEGGGQPFDKGTITILDGADKEIIEVNSILRDKLKAVHIVEK-PIEVG 110

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R  +   H+  HLL            +      +       +     + 
Sbjct: 111 TPVQLDVDWDRRLDIMQQHTGQHLLSAVF-----DTYNMETLSWSMGDEINYIELPSKVE 165

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
              +K ++D VN +I +  P+     + E        + L   Y+    ++ +     G 
Sbjct: 166 DDIVKEVQDKVNQLIFEAHPITVVTPDAEGHEID--TSHLPDDYDQTQGIIRIVK--IGD 221

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             S  C GTH+SST +I  L +++++SIR G  R+    GQR         + LK+++  
Sbjct: 222 LDSNPCCGTHLSSTSQIQSLVLLNQTSIRGGHSRLYFTCGQRVSKLSSEYFDILKTVSGL 281

Query: 749 -LKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            L     +VV +V+++   YRK        +K    L   ++  +   +   +     + 
Sbjct: 282 QLSCQISDVVNKVDQLNTNYRKANSTISALSKELANLKAAEVFKNYRENAEIVYVYRDDT 341

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------NAVDLARL 858
           + + L  V   L   I +      G+    K ++++   +             A D++  
Sbjct: 342 NPEYLNLVQKELLTMINAD--KECGVDLSNKQTLVLFNGQTATGGMVKILGPKAADISAE 399

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             + +    GGG+    Q    N  K +  I  V  +L
Sbjct: 400 LKQRITSLKGGGKGSSFQGKITNYEKGE--IDSVIRYL 435


>gi|302671191|ref|YP_003831151.1| alanyl-tRNA synthetase family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395664|gb|ADL34569.1| alanyl-tRNA synthetase family protein [Butyrivibrio proteoclasticus
           B316]
          Length = 409

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 160/414 (38%), Gaps = 35/414 (8%)

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538
           K     +  +S     +++      +A  G + EVV D+T F+ E GGQ  D G    D 
Sbjct: 3   KELYYESAYISEFFAEVIKCERSENKAYKG-RYEVVLDRTAFFPEQGGQGSDIGVLEFDD 61

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +  +  ++  + G  + H   +   +     +   ID+  R      H+  H+    ++
Sbjct: 62  GK-SVAGIEHVSIGSEIRHIADKE--IPVGTRVRGVIDFARRFSNMQQHTGEHIFSGLVN 118

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +  G   +  G  ++   +  D  +   +T+  ++ +E   N+ I  NL V+      + 
Sbjct: 119 SEYGY--NNVGFHLSDSEVTMD--YDGVLTAENIRKLEIKANEAIWANLDVICEFPEADK 174

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  +    + +  VR+V++   D        C   HV+ TGEI +L +V   + + 
Sbjct: 175 LSEIPYRS--KKELSGDVRIVTIPGID-----ICACCAPHVNRTGEIGMLKVVGLQNYKG 227

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
           G+ R+  + G+RA  +L G+ + +  L + L  S   VV  V+  +++   ++   ++ +
Sbjct: 228 GV-RVNILCGRRALLYLQGEHDIVGELTALLTTSADKVVTSVKRAFDDNSNMKSELSQAR 286

Query: 779 LQL------NVEDLSCHKIADVNFMSHIISEV--------DSKELKSVMDALQKKIQSGI 824
             L       +  ++   I+   F++    ++        DS  L+ ++++L +  +   
Sbjct: 287 ETLIGYEISEIVQVTSSDISGGIFVNAAEDDIYVVKDNAYDSNMLRKLVNSLSEHKKGYC 346

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
               G  +     ++         +     L         G  GGG   M Q  
Sbjct: 347 GAFAGSQESGYRFIIASGASGKDCKALCDKLRTE-----FGAKGGGSNAMVQGS 395


>gi|21450213|ref|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculus]
 gi|125987703|sp|Q3THG9|AASD1_MOUSE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA deacylase alaX; Short=AlaX;
           Short=AlaXp-II; AltName: Full=Alanyl-tRNA synthetase
           domain-containing protein 1
 gi|13543069|gb|AAH05711.1| Alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|122889672|emb|CAM14335.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
 gi|148702091|gb|EDL34038.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]
          Length = 412

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 157/399 (39%), Gaps = 33/399 (8%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G    D   L++T    +A+           
Sbjct: 35  KEVLSG--FHVVLEDTLLFPEGGGQPDDRGTI-NDISVLRVTRRGAQAD-------HFTE 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  SPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSW----ELGRLRSVIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV+
Sbjct: 141 LDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D     S +C GTHVS+  ++ ++ I+     +     +  + G R    +     
Sbjct: 201 IEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMS 798
             K+L S LK    + V  V+++    + LQ  +      L V      + +      ++
Sbjct: 256 SEKALTSLLKCGVEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHSLRSSPAWGGVVT 315

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LAR 857
               E DS+ +  + + +  +     ++ + +  EK A + ++          AV+ L  
Sbjct: 316 LHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKGAGLFLLAGPAE-----AVETLGP 367

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A+VL G G G +    Q      ++  +A A +  ++
Sbjct: 368 RVAEVLEGKGAGKKGRF-QGKATKMSRRAEAQALLQDYV 405


>gi|74212129|dbj|BAE40227.1| unnamed protein product [Mus musculus]
          Length = 412

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 157/399 (39%), Gaps = 33/399 (8%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G    D   L++T    +A+           
Sbjct: 35  KEVLSG--FHVVLEDTLLFPEGGGQPDDRGTI-NDISVLRVTRRGAQAD-------HFTE 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  SPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSW----ELGRLRSVIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV+
Sbjct: 141 LDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSMDDPEVEQVRGRGLPDDHAGPIRVVT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D     S +C GTHVS+  ++ ++ I+     +     +  + G R    +     
Sbjct: 201 IEGVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMS 798
             K+L S LK    + V  V+++    + LQ  +      L V      + +      ++
Sbjct: 256 SEKALTSLLKCGVEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHSLRSSPAWGGVVT 315

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LAR 857
               E DS+ +  + + +  +     ++ + +  EK A + ++          AV+ L  
Sbjct: 316 LHRKEGDSEFMNIIANEIGSEET---LLFLTVGDEKGAGLFLLAGPAE-----AVETLGP 367

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A+VL G G G +    Q      ++  +A A +  ++
Sbjct: 368 RVAEVLEGKGAGKKGRF-QGKATKMSRRAEAQALLQDYV 405


>gi|229917979|ref|YP_002886625.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sp. AT1b]
 gi|229469408|gb|ACQ71180.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sp. AT1b]
          Length = 386

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 163/394 (41%), Gaps = 28/394 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G       + +PFYAE GGQ  D G        L + DVQ K +G   H   +    L
Sbjct: 15  EDGNGHWHTLENSPFYAEGGGQPADRGWI----GTLPVLDVQIK-DGEVWH---LLSESL 66

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
            T  ++ + ID   RR  SI H+A H++   L    G      G   T   +  +     
Sbjct: 67  PTGKAVEVRIDEDVRRDHSIQHTAQHVITAILEDRHGIRTLSFGIGETDSSIEIETA--- 123

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +  A ++++E  +  +I +N P+    + +E+     A     T     +R+V +E  D
Sbjct: 124 TMDWAHVEALEQEMQQLIFENRPIRVYEIPKEEVDR--ARLRKETDRTGMIRIVEIEGLD 181

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                   CGGTHV +TG++  +++ +   +R G  R+  + G RA          L+++
Sbjct: 182 YN-----ACGGTHVETTGQLGTIHVTAMKKVR-GNLRLTYVAGNRAIKATQQARAALRTI 235

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEV 804
                 +  +V  RV  I E   +L+     + L+  +       +  + N+++  +   
Sbjct: 236 HHTFSTTNESVAARV--IEEHTIRLEREKEIKTLEERIAKAKVEAVLKEDNYVALHVGRT 293

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
           +++ L + +  +++   +G I +      +K  V+   T+D+          + + + + 
Sbjct: 294 EAETLTTAI--IERIAATGRIAVGANYGTQKLFVMHDGTQDIA----VGTFLKAALQEMQ 347

Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            G GGG    AQ+   +  + ++ I  +   L++
Sbjct: 348 IGRGGGNHKQAQARFTSVAELEKGIEEIVKRLQE 381


>gi|299139528|ref|ZP_07032702.1| Alanyl-tRNA synthetase, class IIc-like protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598456|gb|EFI54620.1| Alanyl-tRNA synthetase, class IIc-like protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 423

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 131/346 (37%), Gaps = 16/346 (4%)

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQ 542
           ++ V  I        EA   Q++  V  D+T FY E GGQ  DTG  +     G  + + 
Sbjct: 19  TATVADIRLDSHEKNEAGEKQQLWQVALDRTAFYPEGGGQPWDTGVLVAVSRSGATLEVA 78

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA-LSTIL 601
           +  V++   G   H+    R  L     +   +D   R      HS  HLL  A LS + 
Sbjct: 79  VERVEEDEAGEVWHYV---RKPLVEGTEITGRVDAARRMDHVQQHSGQHLLSAAFLSELE 135

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
              VS +    T          S+ ++  EL+ +E   N ++  +  +  R ++R +A  
Sbjct: 136 AKTVSFHLGAETSSIDLVLREGSERLSEDELQRVETAANRLVFADRVLTPRWVSRGEAEE 195

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                 L         +  VE +    +    CGGTHV+STG I  + +     +R G  
Sbjct: 196 MYERGDLRKLPEREGPMRIVEMQGVEFN---ACGGTHVASTGAIGGVMLRRVEKVRQG-W 251

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH--AKRKL 779
           R+E + G RA          L  +A  L V  G+V GRV  + E+ +           +L
Sbjct: 252 RVEFVCGLRAVQAARKDFGLLAEVAGSLSVGAGDVPGRVASLLEDAKAAAKERRGLIEEL 311

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                     +  + + +  +    + +  K V   +    +  ++
Sbjct: 312 ARAEAVALVAEAVEGSAVRAVFVGKEMEFAKQVAAKVAGFGRMAVV 357


>gi|15644472|ref|NP_229524.1| alanyl-tRNA synthetase-related protein [Thermotoga maritima MSB8]
 gi|4982303|gb|AAD36791.1|AE001812_1 alanyl-tRNA synthetase-related protein [Thermotoga maritima MSB8]
          Length = 373

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 126/322 (39%), Gaps = 23/322 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E    G+K+  V   +PFY +  GGQLGD G   G    L++    K+  G  +H+    
Sbjct: 10  EVIKDGEKIIAVSRTSPFYPDGKGGQLGDRGKI-GPANVLKV----KEKNGYILHY---L 61

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L         ID   R+ ++  H+A H+L  A   +         S    + +    
Sbjct: 62  DAHLEPGD-YECEIDPARRKDIACQHTAQHILSAAFLKVADLETV---SFHMGERVSTID 117

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            ++  +    L+  ED  N+++     V    + +E+A       L   +   +VRVV +
Sbjct: 118 LNAPFVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKLPNVE--GKVRVVKI 175

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G      CGG HV +TGEI L+ IV    ++  + RI    G RA      +D+ 
Sbjct: 176 -----GDFDVTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFTAGDRALKDYREKDKL 230

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHI 800
           LKSL+  L  S   ++ R E + EE ++      K   +         +   V  +  + 
Sbjct: 231 LKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKVGKYYLYH 290

Query: 801 ISEV--DSKELKSVMDALQKKI 820
            S    + K L   +   +  I
Sbjct: 291 FSGTPEEMKYLPKFLADRKDTI 312


>gi|255761632|gb|ACU32859.1| alanyl-tRNA synthetase [Dicranosepsis sp. 'fake revocans']
          Length = 147

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/147 (43%), Positives = 83/147 (56%), Gaps = 10/147 (6%)

Query: 57  VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116
            +  V   QKC+RAGGKHNDLD VG+   HHTFFEMLGN+SFG YFK+     AW+ LT+
Sbjct: 3   KWVRVANTQKCIRAGGKHNDLDXVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTE 62

Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168
              L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW M ETGP
Sbjct: 63  RLALPKDRLYVTYFGGDEASGLEPDYECKQIWMDL-GLKPEHILPGSMKDNFWEMGETGP 121

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGE 195
            GPCSE  FD+           + +  
Sbjct: 122 XGPCSEXHFDRIGG-RSVPELVNMDDP 147


>gi|228934894|ref|ZP_04097725.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824794|gb|EEM70595.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 333

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 130/312 (41%), Gaps = 25/312 (8%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            V+ ++T FY   GGQ  DTG   G    + +  V++  E I    A      L TE  +
Sbjct: 42  YVILNETVFYPTGGGQPHDTGTLNG----IAVLGVEEVDEEIRHFIAE----QLHTE-EV 92

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              I+++ R      H+A H+L  A       ++   G  +  + +  D+  ++ + +  
Sbjct: 93  EGKINWERRFDHMQQHAAQHILSAAFWDY--FNIPTIGFHLGKETVTIDLE-TENLHAET 149

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           ++      N I+ +N P++ + MN E+A              + +RVV +E         
Sbjct: 150 VEKAVQIANKIVFENHPILIKWMNLEEAKTLPLRK--EPTMTENIRVVMIEN-----FDY 202

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             CGGTH   TGE+  + ++S    + GI R+  I G R    +  Q + +K ++  L  
Sbjct: 203 NGCGGTHPKRTGEVGPIQVLSWERNKGGI-RLTFIAGWRTLKLIGQQQQIMKDVSKQLNS 261

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVEDLSCH--KIADVNFMSHIISEVDS 806
           S+ ++  +V ++    ++ +       ++ L     +L     KI     +S + +    
Sbjct: 262 SESDIPAKVAQLLTSQKENEKAMQTMTEKLLYTEANELLQQPTKIHAGILISKVFTNRSM 321

Query: 807 KELKSVMDALQK 818
           +E+  +   + +
Sbjct: 322 QEIAKLSAIITE 333


>gi|15430869|gb|AAK98603.1|AF406753_1 analyl-tRNA synthetase-like protein [Actinidia deliciosa]
          Length = 209

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/215 (34%), Positives = 111/215 (51%), Gaps = 11/215 (5%)

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G+HV+Q GS + P+ LRFD TH   ++  EL  +E+ VN  I   LPV     N  +A A
Sbjct: 1   GTHVNQAGSLVAPERLRFDFTHFDKVSDEELARVEEIVNQKIWAKLPVNIFQKNIAEAKA 60

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            GA AL G KY D V VV +     G +   LCGG HV++T EI L  IV+E+ I AG R
Sbjct: 61  VGAMALFG-KYGDIVPVVQI-----GDYGLELCGGCHVANTSEIGLFKIVAEAGIGAGTR 114

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RIEA+TG+ A + L    +   +    +K +   +  R+E + ++  +L+        +L
Sbjct: 115 RIEAVTGKAAFTLLNEPSQGSSAYRFLVKTTIEGIPDRIEGLSQQIHQLEKEKESLTAKL 174

Query: 782 NVEDLS-----CHKIADVNFMSHIISEVDSKELKS 811
              +L+       KI  V+ ++  I   D   L++
Sbjct: 175 GNTELNDIKQSIKKIEGVSVVARKIEGQDMNGLRA 209


>gi|110668771|ref|YP_658582.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
 gi|109626518|emb|CAJ52980.1| alanine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 412

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 146/398 (36%), Gaps = 33/398 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E            V  D T FYAE+GGQ  D G        + +TDVQ  +    V H +
Sbjct: 13  EFTATVTGIDGQVVTLDHTYFYAESGGQPPDIGTLSD----ISVTDVQ--SADGVVKHTL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +   ID + R      H+A+H+++ A   IL  ++   G  I  + +R 
Sbjct: 67  ASTPAFDIGDDITGIIDDEFRNYCMRAHTASHIIYGAGRQIL-DNLGYGGFGINSEKIRV 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRV 678
           D T + PI    L  +E   N  + ++  V    +   +A A    A    T+       
Sbjct: 126 DFTTTTPIDDETLIKLEQLTNRTVWESRDVTWETVPTAEAAAREDVAFNTKTEEGVMSDA 185

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
            SV   D      A CGGTHV +T  +  + ++  S+   G+ RIE   G         Q
Sbjct: 186 DSVRLVDIDGWDVAACGGTHVGNTSAVGPVTVLERSNPGEGMTRIEFAVGPTGIDRRATQ 245

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSC 788
              L+  A  L+ +  N+  R   + +E  +L+          L  A    +    D + 
Sbjct: 246 HRALRETAIALETNIINLSDRATALRDERDELESRVNDLEAKILDSAIVDFESTQTDTAV 305

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII--MLVGISKEKKASVLIVVTEDL 846
            +I  +  +S  +++   +  K  + +       G+    ++ I    +   +++  +D 
Sbjct: 306 WRIGSITEISVGVNDA-GEAAKRALKSPSNIDHEGVPHGSVIAIVGTGERPFVVIAADDA 364

Query: 847 LDRFNAVDLARLS-----AKVLGGGGGGGRPHMAQSGG 879
            +  NA  +             GG      P  AQ GG
Sbjct: 365 SE-VNAGTVIDELTDTYGGGGGGG------PSFAQGGG 395


>gi|206901179|ref|YP_002251462.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Dictyoglomus thermophilum H-6-12]
 gi|206740282|gb|ACI19340.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Dictyoglomus thermophilum H-6-12]
          Length = 382

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 147/361 (40%), Gaps = 35/361 (9%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           I +    + +        +  D+T FY E GGQ  D G  IGDG ++ +  V ++ +GI 
Sbjct: 13  IFRWKSRIGKIKQEGDFLLSLDETIFYPEGGGQPSDKGEIIGDGWKILVDYVFEE-DGII 71

Query: 555 VHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            H          +    + + ID   RR+    H+A HLL   L       +   G  I 
Sbjct: 72  WHKGKKSGERFPKVGEVVDIFIDKDLRREYMEQHTAQHLLSAILEKEY--SLETTGFQIF 129

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D  + ++ +      + +K +E+ VND I +N+PV     +                  
Sbjct: 130 EDHTKIEIPYKGLNPESFIKEVEEKVNDFIGKNIPVSIYWKD------------------ 171

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           ++ R+V +   D        CGG HV + GE+ +L IV          R+E + G+R   
Sbjct: 172 EKTRIVEIPGLDVN-----PCGGLHVKNLGELRVLKIVDFYRKNNIYWRVEFVAGRRVIK 226

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV--EDLSCHKI 791
            L  ++++ K +   L     ++V  VE +  +   L+    K K +LN    DL     
Sbjct: 227 RLEEREKEYKKIKELLGNP--DIVEGVEILLVKIENLERQVKKFKEELNSYRADLLLKDA 284

Query: 792 ADVNFMSHIIS--EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
            +V     I+   +++ ++LK +   L  K   GI+ ++  S+ +       V  D+ D+
Sbjct: 285 IEVGGYKLILKILDLEMEDLKHIAQRLLAK--EGILGVLFNSQGQGFVFGSKVENDIWDK 342

Query: 850 F 850
            
Sbjct: 343 V 343


>gi|164686159|ref|ZP_02210189.1| hypothetical protein CLOBAR_02597 [Clostridium bartlettii DSM
           16795]
 gi|164601761|gb|EDQ95226.1| hypothetical protein CLOBAR_02597 [Clostridium bartlettii DSM
           16795]
          Length = 353

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 146/357 (40%), Gaps = 36/357 (10%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            EI++      K  +V D+T FY E GGQL D G      I         + + +  H  
Sbjct: 16  AEIIDIKEIDNKFHIVLDKTGFYPEGGGQLCDLGKIDSHDIEY-----VYEKDDVIYHVL 70

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-----STILGSHVSQNGSCIT 613
             +   +     +   +++  R     +H A H++               H+    SC+ 
Sbjct: 71  NTKPIKIH---KVKCILNWNRREYSMTHHLAQHIISALFLKEFNKKTTSFHMGIEDSCVD 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G   D          E+K IE   NDIIA+N+PV T  + +++A          +K N
Sbjct: 128 IEGSFSD---------KEIKKIEKMANDIIAENIPVETFEITKKEAKKLKLKDDF-SKIN 177

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             VR+V V     G   +  C G H  +T ++ ++             RIE + G++A +
Sbjct: 178 GNVRIVKV-----GDLDTNCCCGVHPQNTLDLRIIKFKKHEKY-KTSTRIEYLAGKKAIN 231

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----C 788
           +++ +D+ L  +  +L  S  + +  +E I  +       + + K ++   +L       
Sbjct: 232 YIINRDDNLSKICKYLSCSDEDSIKGIENINNKLTDSIKENKRLKEEIAHYELKDLVSSA 291

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             + D++ +  I ++ D+K +  + + + ++     I+L  +    + +++   +++
Sbjct: 292 KLVNDISIIDKIYNDKDTKYISKLANKITEEDNK--IVLFALINGDRVNLVFSCSKN 346


>gi|77627733|ref|NP_001029281.1| alanyl-tRNA editing protein Aarsd1 [Rattus norvegicus]
 gi|81883726|sp|Q5XI97|AASD1_RAT RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|54035303|gb|AAH83790.1| Alanyl-tRNA synthetase domain containing 1 [Rattus norvegicus]
 gi|149054301|gb|EDM06118.1| similar to hypothetical protein MGC2744, isoform CRA_a [Rattus
           norvegicus]
          Length = 412

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 153/399 (38%), Gaps = 33/399 (8%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G    D   L++T    +A+          +
Sbjct: 35  KEVLSG--FQVVLEDTLLFPEGGGQPDDRGTI-NDISVLRVTRRGAQAD-------HFTQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  TPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSW----ELGKLRCVIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV+
Sbjct: 141 LDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D     S +C GTHV++  ++ ++ I+     +     +  + G R    +     
Sbjct: 201 IEGVD-----SNMCCGTHVNNLSDLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
             K+L S LK    + V  V+++    + LQ  +      L V      + +        
Sbjct: 256 SEKALTSLLKCGAEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHTAHTLRSSPAWGGVVT 315

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS---VLIVVTEDLLDRFNAVDLAR 857
           +   +       M+ +  +I S   +L     ++K +   +L   TE +        L  
Sbjct: 316 LHRKEGDS--EFMNIIANEIGSEETLLFLTVGDEKGAGLFLLAGPTEAVET------LGP 367

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A+VL G G G +    Q      ++  +  A +  ++
Sbjct: 368 RVAEVLEGKGAGKKGRF-QGKATKMSRRAEVQALLQDYV 405


>gi|224543391|ref|ZP_03683930.1| hypothetical protein CATMIT_02592 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523678|gb|EEF92783.1| hypothetical protein CATMIT_02592 [Catenibacterium mitsuokai DSM
           15897]
          Length = 365

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 147/378 (38%), Gaps = 41/378 (10%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +     V   K E++ DQT F+ E GGQ  D G        + + DVQ K   + +H+  
Sbjct: 15  DFKATVVEVNKNEIILDQTLFFPEEGGQECDLGTIND----IPVKDVQIK-NDVIIHY-- 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V++       ++   ID++ R     NH+  HLL   + ++ G              + +
Sbjct: 68  VKKHHFNVGDTIEGHIDWKRRYSFMQNHTGEHLLSGIVHSLYGYDNVSFHLNSEEGQVEY 127

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D          ++  IE+ VN  I +N  +     +  ++I+         +   +VR+V
Sbjct: 128 DGDIK------DIDLIEEKVNQAIYENKEIHCFYPDDLESISY----RSKKEIEGKVRIV 177

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            ++      +    C   HV  TGE+ +  I+       G  R   + G+RA        
Sbjct: 178 EIK-----DYDICACCAPHVKRTGELGIFKIIKVIHTTRG-TRFIFLFGERAYHRFKDDF 231

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + L+SL      +   +V +V +++EE   L++ +A+ + +          + D  ++  
Sbjct: 232 DHLESLYHLFSSNNQTLVKQVNKMYEEKTALEVKYAQLEKE------HMLSLCDHAYL-- 283

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
            + +      + V + L     +G + +     ++K    ++ + +     NA+D+    
Sbjct: 284 FVEDCLPANQREVTNHLVNVYSTGGVFV---GNDEKGYRYVIGSAN-----NALDILTQL 335

Query: 860 AKVLGGGGGGGRPHMAQS 877
             +     GGG   M Q 
Sbjct: 336 KSLKS--KGGGSKDMIQG 351


>gi|218283792|ref|ZP_03489715.1| hypothetical protein EUBIFOR_02309 [Eubacterium biforme DSM 3989]
 gi|218215598|gb|EEC89136.1| hypothetical protein EUBIFOR_02309 [Eubacterium biforme DSM 3989]
          Length = 364

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 140/377 (37%), Gaps = 42/377 (11%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +V      +  +++ DQT F+ E GGQ  D G        +++ DVQ   + I  +    
Sbjct: 19  VVSCIKKNELYDIILDQTLFFPEEGGQTCDKGTLNA----IEVVDVQIINDEIHHYTHSA 74

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             G       +   ID+ +R     +H+  H+L   +      HV   G  +  + +  D
Sbjct: 75  LNG------DVQGIIDWTHRYTNMQHHTGEHILSGLMHKE--FHVDNVGFHLGYNEITAD 126

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 + + ++K IE  VN +I  N PV T     ED       A L     D  +   
Sbjct: 127 YAMD--LNNDQIKRIEALVNSVIFSNKPVKTYY--LEDYSNMEYRAKL-----DLAKPRL 177

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           VE ED  +     C   HV ST E+ L  IV    I+ G  R+  + G+ A    + + +
Sbjct: 178 VEIEDVDL---CACCAPHVKSTIEVGLFKIVKSMKIKKG-TRLFFLCGKLAYEDYVLKHD 233

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           +   +++ L  S   +   V+ + +E   L+    +   ++    +  HK   +     +
Sbjct: 234 QSIQISNQLSSSIETLSSNVQRVLDENYALKQRIKQLNKEMVDHLIIEHKENQI----VL 289

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             E D        + L     +  ++LV   K+      +  ++D+  +       R   
Sbjct: 290 CDEFDRDTQLYYYNKLVS-FSNNYVLLVSKQKDNYR--FMTNSKDIFLQLKEKHQVR--- 343

Query: 861 KVLGGGGGGGRPHMAQS 877
                  GGG+    Q 
Sbjct: 344 -------GGGKNDFFQG 353


>gi|226510067|ref|NP_001142842.1| hypothetical protein LOC100275233 [Zea mays]
 gi|195610446|gb|ACG27053.1| hypothetical protein [Zea mays]
          Length = 233

 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 10/216 (4%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  LCGGTHVS+T EI    I+SE  I +GIRRIEA+ G     ++  +D  ++ L   L
Sbjct: 11  SLELCGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFVDYVCARDNYMRRLCLSL 70

Query: 750 KVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           KV   +V  RVE I EE R        L+   A  K        +  +  +V  +   + 
Sbjct: 71  KVKAEDVNSRVETILEELRATRNEASSLRSKIAVLKAASLASRATTVEPQNVRIVVENMG 130

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLD-RFNAVDLARLSA 860
           +VD+  LKS  + L   ++    +++G S  + K S++   +  +++    A       A
Sbjct: 131 DVDADGLKSAAEHLIDTLKDPAAVILGSSPGDGKVSLVAAFSPAIVEMGLQAGKFVSGIA 190

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           K+ GGGGG G+P+ AQ+GG        A+    + +
Sbjct: 191 KLCGGGGG-GKPNFAQAGGRKPENLPDALEKARAEI 225


>gi|321475975|gb|EFX86936.1| hypothetical protein DAPPUDRAFT_312382 [Daphnia pulex]
          Length = 403

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 141/382 (36%), Gaps = 27/382 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           Q  EV+ + T F+ E GGQ  D G   G    + +  V+++ +          +  L   
Sbjct: 38  QVFEVLLEDTVFFPEGGGQPDDRGFLNG----IPVLQVKRRGKDAIH----FLQDSLDVG 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
                 ID++ R      HS  H++        G   +      +   +  D  +   +T
Sbjct: 90  TLATGVIDWERRWDHMQQHSGQHVITAIADASFGFKTTSWWLGESVSHIELDTVN---VT 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            A+LK+IE  VN+ I + + V  ++   +       +  L   +   VRVV++   D   
Sbjct: 147 DAQLKTIESQVNEKIREAVSVEVKVYEGDAIPDQVRSRGLPDDHVGPVRVVTILGVD--- 203

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
             S +C GTHVS+   +  + ++     +     +  I+G R   ++    ++ + L   
Sbjct: 204 --SNMCCGTHVSNLSHLQFIKLLYTEKGKKNKTNLFFISGNRVLDYINRSLDRERQLTKI 261

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
           LK    + V    ++    +  Q        +L V      K     F      + D+  
Sbjct: 262 LKNGPEDHVDLANKLQALVKLSQKTLQTLMKELAVVQAEKIKSEKPKFAIVHRKDGDADY 321

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             +++  L       I +L+ + ++    + ++  ED++       L       L  G G
Sbjct: 322 ASALISELAS---EAITLLITVGEDNNGQMTLIGQEDVVS-----SLGPKICSCLA-GKG 372

Query: 869 GGRPHMAQSGGP--NGNKADQA 888
            G+ +  Q+     N +   +A
Sbjct: 373 AGKGNKFQAKVTQLNPSARQEA 394


>gi|84000115|ref|NP_001033162.1| alanyl-tRNA editing protein Aarsd1 isoform 1 [Bos taurus]
 gi|122138793|sp|Q32LK1|AASD1_BOVIN RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName:
           Full=Alanyl-tRNA synthetase domain-containing protein 1
 gi|81674607|gb|AAI09538.1| Alanyl-tRNA synthetase domain containing 1 [Bos taurus]
          Length = 444

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 21/265 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G    D   L++T    +A+          +
Sbjct: 35  KEVLSG--FQVVLEDTLLFPEGGGQPDDRGTI-NDISVLRVTRRGTQAD-------HFTQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  TPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADDLFGLKTTSW----ELGRLRSVIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN+ I   LPV  R ++ +D          L   +   +RVV+
Sbjct: 141 LDSPTVTAEQVAAIERSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +E  D     S +C GTHVS+  ++ ++ I+     +     +  + G R    +     
Sbjct: 201 IESVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWE 765
             K+L + LK    + V  V+++  
Sbjct: 256 IEKALTALLKCGAEDHVEAVKKLQN 280


>gi|289580836|ref|YP_003479302.1| threonyl/alanyl tRNA synthetase SAD [Natrialba magadii ATCC 43099]
 gi|289530389|gb|ADD04740.1| Threonyl/alanyl tRNA synthetase SAD [Natrialba magadii ATCC 43099]
          Length = 446

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 160/444 (36%), Gaps = 63/444 (14%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
               E  +     +  + + FY E+GGQ  D G   G      + DVQ         H +
Sbjct: 14  RFETEVTAIDGRRIWLETSYFYGESGGQPADRGTIDG----AAVEDVQLADGKQV--HVM 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E    RT   ++ +ID+  R      H+A+H+L+ A   +L   +   G  I  + +R 
Sbjct: 68  AEEPTFRTGQRVLCSIDWAFRMYCMRAHTASHVLYGAGRRLL-DDLGYGGFDIGEEKVRV 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND----- 674
           D+  +  +    L  ++  VN  + ++ PV    +   DA      A       D     
Sbjct: 127 DLETTSDLDDETLLELDSLVNKAVWESRPVSWDDIPVADAREREDIA-FNEATEDGAFQK 185

Query: 675 -RVRVVSVEYED--------------------------GGVHSSALCGGTHVSSTGEIML 707
            RVR+V++   D                                A CGGTHV +T EI  
Sbjct: 186 GRVRIVTIGGADENGGNGTRARNRSSSGPTVTTSTDGSAEPWDVAACGGTHVRNTREIGP 245

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + ++  S+   G+ R+E   G  A      +     +    L V    V   +  + +E 
Sbjct: 246 VTVLGRSNPGEGMTRVEFSVGPTAIDRRREEKATALTARQELGVPLEEVGDELTRLQDER 305

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-------------SEVDSKELKSVMD 814
             L       +  L  + L      + + +  +              + VD+ +   +  
Sbjct: 306 DNLSAEIQTLQRDLVDQQLESADSFERDGLEWLAVAVGGEDGGGGESAGVDANDAGEIAR 365

Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA-RLSAKVLGGGGGGGRPH 873
               + ++ ++++ G +       +  V ED  +  +A  +   L+A+  GGGG  G   
Sbjct: 366 EAAGE-RADVVVIAGAA--GSPYAVASVAEDAQETMSAGSVIDALTAEFGGGGG--GSDA 420

Query: 874 MAQSGG----PNGNKADQAIAGVA 893
           +AQ+GG    P+ ++    +  V 
Sbjct: 421 LAQAGGFAELPDEDEIRDVLESVE 444


>gi|313680957|ref|YP_004058696.1| threonyl/alanyl tRNA synthetase sad [Oceanithermus profundus DSM
           14977]
 gi|313153672|gb|ADR37523.1| Threonyl/alanyl tRNA synthetase SAD [Oceanithermus profundus DSM
           14977]
          Length = 397

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 142/396 (35%), Gaps = 27/396 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G +  V  D+T FY  +GGQ  DTG   G    L + + +K  + I      V    L
Sbjct: 24  EEGGRFLVELDRTLFYPTSGGQPHDTGTL-GGVRVLDVFEPEKHGQRIVH----VLEAPL 78

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH---VSQNGSCITPDGLRFDVT 622
               ++   ID+  R +    H+  H+L  A       +   VS  G  I  D   FDV 
Sbjct: 79  EEGAAVEGKIDWTRRYRHMQRHTGQHVLSQAFLRAAQWNTIAVSLAGPEIHID---FDVW 135

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
                    L   E   N  +  NL V  R +            +   K    VRVV +E
Sbjct: 136 PGPGAAEEVLAEAEALANWAVYANLAVSAREVPEAQVPLLPLRRM--PKVRGSVRVVQIE 193

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
             D      A CGGTH+ ST E   + ++     +    R+ A TG  A      +   L
Sbjct: 194 DWDL-----APCGGTHLRSTAEAGPIKLLGFEKGKKKTIRVYARTGWEALEDYAAKHRTL 248

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           K+LA        +V  RV+++ +E    +           + +    ++A   F +    
Sbjct: 249 KALAGRFSAGVFDVPERVQKLEDELYAARGEAQAL--AAELAEHYARELAQAGFPAAR-- 304

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +V    L      + +   +  ++       + A +L+V   D         L R   + 
Sbjct: 305 QVPLAALAETGRRVAEWPGALALLAALEPGGEHARLLLVAHPDREAELR--SLWRERLEP 362

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           L G  GGGR H+ Q G     K   A+   +   K+
Sbjct: 363 L-GARGGGRGHI-Q-GRLAAGKLQLALEAFSGAAKE 395


>gi|296476301|gb|DAA18416.1| alanyl-tRNA synthetase domain-containing protein 1 isoform 1 [Bos
           taurus]
          Length = 444

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 21/265 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G    D   L++T    +A+          +
Sbjct: 35  KEVLSG--FQVVLEDTLLFPEGGGQPDDRGTI-NDISVLRVTRRGTQAD-------HFTQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  TPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADDLFGLKTTSW----ELGRLRSVIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN+ I   LPV  R ++ +D          L   +   +RVV+
Sbjct: 141 LDSPTVTAEQVAAIERSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           ++  D     S +C GTHVS+  ++ ++ I+     +     +  + G R    +     
Sbjct: 201 IQSVD-----SNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIFLAGNRVLKWMERSHG 255

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWE 765
             K+L + LK    + V  V+++  
Sbjct: 256 IEKALTALLKCGAEDHVEAVKKLQN 280


>gi|156406576|ref|XP_001641121.1| predicted protein [Nematostella vectensis]
 gi|156228258|gb|EDO49058.1| predicted protein [Nematostella vectensis]
          Length = 386

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 133/368 (36%), Gaps = 40/368 (10%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           V   +  ++       EVV + T  + E GGQ  D G   G    +++  V ++      
Sbjct: 18  VVSCKPAKQNKKDDVFEVVLEDTILFPEGGGQPDDKGMING----IEVLQVFRRGRQAVH 73

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
               V    +       L +D++ R      HS  HLL   +    G   +         
Sbjct: 74  ----VLSQHIDEGAQASLVLDWERRFDHMQQHSGQHLLSALIENKFGYKTTSW----ELG 125

Query: 616 GLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALL 668
            +R  +  H K +T  E+  IE + N  I  ++PV   +         E+A   G    L
Sbjct: 126 RVRSHIELHCKCLTPDEIACIESSANAAIRGHVPVCVHVYPDKTDPELEEAQTRG----L 181

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
              +   +RV+ ++  D       +C GTHV +  ++  + +  +     G  R+  + G
Sbjct: 182 PDDHIGPIRVIEIKGID-----KNMCCGTHVDNLSQVQAVKLFPDVDSMRGGCRLFFLCG 236

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLS 787
            R   HL    E  ++L+  L          VE I    R   L +   K QL  +  L 
Sbjct: 237 DRVFKHLGRAMENDRALSKCLSCGPDEHTTAVERIQTSLR---LANKSLKSQLREIAYLE 293

Query: 788 CHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA-SVLIVV 842
             +I        F+       D   + ++++ L       I +LV +  +K     L++ 
Sbjct: 294 ASQIKSSLGGRTFIYIHRENGDMDYINTIVNELGSL---SIPLLVTVGPDKGPGQFLLLA 350

Query: 843 TEDLLDRF 850
           +E  ++  
Sbjct: 351 SEAEVNEL 358


>gi|226356287|ref|YP_002786027.1| alanine--tRNA ligase [Deinococcus deserti VCD115]
 gi|226318277|gb|ACO46273.1| putative Alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus
           deserti VCD115]
          Length = 412

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 134/358 (37%), Gaps = 16/358 (4%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                +  Q  E+  D T FY E GGQ  DTG     G   ++T  +K      + HA+ 
Sbjct: 19  FAATVLDVQAQEIALDATAFYPEGGGQNTDTGRVRWTGSEARMTAARKDKSTGVIWHALA 78

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
                     +   +D   R + +  HS  HLL  A + I         S  +P+     
Sbjct: 79  GDLP-PPGTRITGEVDQDVRWRHAQRHSGEHLLAQAFARINPVFQVAAVSMRSPE---CT 134

Query: 621 VTHSKPITSAELKSIEDNVND-IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +        + +++ E  + + +  ++L + T I+  +            TK   +VR+V
Sbjct: 135 LDLRGDPAESHVRAAEALLRETLGRRDLELHTPIVPEDQLGTYSLRR--ETKVRGQVRLV 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
             +   G     + CGGTHV        + I+     +AG+ R+  + G+ A  +L G  
Sbjct: 193 IFQEPGGAPFDVSACGGTHVPRASLAAPVVILRTERQKAGLTRVVFMAGEEATRYLSGVY 252

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
              ++LA    V    +  RV  +  E   L+      + +L    L    +  V  +  
Sbjct: 253 HSARTLAQGFSVPVDGLADRVAALAGERDALRAAMETLREKLAAALLEAQPLQTVGGVPL 312

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
              ++D      ++  L  ++  G +++V  +  +       V   + +  +A +L R
Sbjct: 313 REIQLDD---PELLAPLLMRVPQGTVVVVLTAGGR-----CGVGSAVRN-IHAGELLR 361


>gi|170288890|ref|YP_001739128.1| threonyl/alanyl tRNA synthetase SAD [Thermotoga sp. RQ2]
 gi|33413314|emb|CAD67939.1| hypothetical protein [Thermotoga sp. RQ2]
 gi|170176393|gb|ACB09445.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga sp. RQ2]
          Length = 373

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 127/322 (39%), Gaps = 23/322 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E    G+K+  V   +PFY +  GGQLGD G   G    L++    K+  G  +H+    
Sbjct: 10  EVIKDGEKIIAVSRTSPFYTDGKGGQLGDRGKI-GPANVLKV----KEKNGYILHYLDAH 64

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                        ID   R+ ++  H+A H+L  A   +         S +  + +    
Sbjct: 65  LEP----GEYEYEIDLARRKDIACQHTAQHILSAAFLKVADLETV---SFLMGERVSTID 117

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            ++  +    L+  ED  N+++     V    + +E+A       L   +   +VRVV +
Sbjct: 118 LNAPFVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKLPNVE--GKVRVVKI 175

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                G      CGG HV +TGEI L+ IV    ++  + RI  + G RA      +D+ 
Sbjct: 176 -----GDFDVTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFVAGDRALKDYREKDKL 230

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKIADVNFMS 798
           LKSL+  L  S   ++ R E + EE ++      K      ++  +     KI       
Sbjct: 231 LKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKIGKYYLYH 290

Query: 799 HIISEVDSKELKSVMDALQKKI 820
              +  + K L   +   +  I
Sbjct: 291 FSGTPEEMKYLPKFLADRKDTI 312


>gi|261368157|ref|ZP_05981040.1| alanyl-tRNA synthetase [Subdoligranulum variabile DSM 15176]
 gi|282569921|gb|EFB75456.1| alanyl-tRNA synthetase [Subdoligranulum variabile DSM 15176]
          Length = 383

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 140/378 (37%), Gaps = 30/378 (7%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +++   S     VV D+T F+ E GGQ  DTG   GD   L +       +G  + H   
Sbjct: 19  VLDCRESKDGWAVVLDRTAFFPEGGGQPCDTGRL-GDARVLAV-----HTDGETITH--T 70

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L    ++   +D+  R      H+  H+L   L  + G+     G  I    +R D
Sbjct: 71  TDAPLPVGAAVEGILDWAARLDAMQQHTGEHILSGTLHRLYGA--ENVGFHIGSPYVRMD 128

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
            +   P+T+ +L + E   N  +  + PV   + +     A+   +    +    VR+V 
Sbjct: 129 TSI--PLTAEQLAAAEAQANAAVRADTPVHCYVPDAATLAATEYRS--KKELEGPVRLVE 184

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                        C GTH++ TGE+ L+ I+S    + G+ R+    GQRA   +     
Sbjct: 185 AGG------DRCACCGTHLARTGEVGLIKIISAQHYKVGM-RLAVACGQRAYDAVAAGWA 237

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
             +S    L V  G++ G    + E   KL+   A  +  L     +  +       +  
Sbjct: 238 DAESAGRLLSVPVGSLTGAAGRLREAEAKLKQRLAALQNALATACAAGAEPG--KPCTVW 295

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
               D   L+ +  A+  +  +    L    +    ++      D+     A++ A    
Sbjct: 296 AEGADGDGLRRIAMAVTAQTGAPCCALAPGGQGLAYALAAAPGGDVRAACQALNAA---- 351

Query: 861 KVLGGGGGGGRPHMAQSG 878
                G GGG+P   Q  
Sbjct: 352 ---FAGRGGGKPAFCQGS 366


>gi|301117852|ref|XP_002906654.1| alanyl-tRNA synthetase domain-containing protein 1, putative
           [Phytophthora infestans T30-4]
 gi|262108003|gb|EEY66055.1| alanyl-tRNA synthetase domain-containing protein 1, putative
           [Phytophthora infestans T30-4]
          Length = 442

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 131/348 (37%), Gaps = 36/348 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG---ILRT 567
            E+    T  + E GGQ  DTG    DG+++    VQ   +G  +H   V+ G       
Sbjct: 68  YELELHDTVLFPEGGGQPWDTGNI--DGVQVDQVYVQ---DGRCLHRIPVKDGAKAPFVE 122

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +V  +D+  R      HSA HL             +      +    R +V   K +
Sbjct: 123 GQEVVAVVDWARRFDHMQQHSAQHLFSAVAERYGYDTTTW-----SLGEERCNVELEKNV 177

Query: 628 TSAE-LKSIEDNVNDIIAQNLPVVTRIMNREDAI------ASGAAALLGTKYNDRVRVVS 680
             +E L+ IE+ VN  I     V +  M    A          AA     +    +R+V+
Sbjct: 178 IPSETLQKIEEEVNQAI-----VSSLTMTPSFAKPGTKEWEKIAAKFDPGQMPKAMRIVT 232

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           ++  D        C GTHV +  ++  L ++S   +  G  R+  + G+R         +
Sbjct: 233 IDGLDVN-----PCCGTHVQNLAQLRSLRVLSTE-LARGASRVWFVAGERVNREFSRMLK 286

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVE-DLSCHKIADVNFM 797
              +L   L  +  +   RVE++ +  +    +L   +++L  ++  DL       V  +
Sbjct: 287 NEHALTKLLSSAPDDHASRVEKLLQFQKSTTKELKSLQKELAASIARDLVAQTSQGV--V 344

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
           ++   E D   L++++  L    +  + +L       +   L+    +
Sbjct: 345 TYHRDEGDLGFLQTLLGLLGDTKKDAVFVLTAGDVRGEGLFLVAGPPE 392


>gi|195999396|ref|XP_002109566.1| hypothetical protein TRIADDRAFT_20746 [Trichoplax adhaerens]
 gi|190587690|gb|EDV27732.1| hypothetical protein TRIADDRAFT_20746 [Trichoplax adhaerens]
          Length = 398

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 119/345 (34%), Gaps = 24/345 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              +VV + T  +   GGQ  D G        + + DV++                L  +
Sbjct: 30  NGFDVVLEDTILFPAGGGQPDDRGTIN----EVPVHDVRRDGSKAVH----FTEKSLEVD 81

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +  + +D+  R      H+  HL+        G              +       K +T
Sbjct: 82  ANAHIVVDWNRRFDHMQQHTGQHLITAVFENRYGYKTLSWNLGKVKSSIELSC---KSMT 138

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGG 687
             E+   E  +N  I  N PV   +  ++D       +  +   +   VRVV +E  D  
Sbjct: 139 QEEIDCAELEINKAIKANTPVSVHLYEKDDPGLEKIRSRGIPDDFAGPVRVVEIENIDAN 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C GTH+++   + ++ ++     R G  RI  + G R  + L       + L  
Sbjct: 199 T-----CCGTHLANLSHLQMIKLLHTEPTR-GCTRIHFLAGNRVMNTLCSMINTERKLTQ 252

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII--SEVD 805
            L     + V +V+++ +  +  Q   A R     +  L   K  + + +   +   + D
Sbjct: 253 ILSCGPEDHVDQVQKLQKTAKSSQK--AARNYLREIATLEAEKFNNTSDLVLCVHREDGD 310

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
              L  +   ++ K  + II L   S       L+     L+D+ 
Sbjct: 311 MDFLNVINSKIRNK--NAIIFLSVGSNSTGGQFLLTGPPSLIDKI 353


>gi|148270155|ref|YP_001244615.1| threonyl/alanyl tRNA synthetase, SAD [Thermotoga petrophila RKU-1]
 gi|147735699|gb|ABQ47039.1| Threonyl/alanyl tRNA synthetase, SAD [Thermotoga petrophila RKU-1]
          Length = 373

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 129/324 (39%), Gaps = 24/324 (7%)

Query: 502 VEEAVSGQKVEVVFDQT-PFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           V+E V  +   +   +T PFY +  GGQLGD G   G    L++    K+ +G  +H+  
Sbjct: 8   VDEVVRDRDKIIAISRTSPFYPDGKGGQLGDRGKI-GPANVLKV----KEKDGYILHYLD 62

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                          ID   RR ++  H+A H+L  A   +         S +  + +  
Sbjct: 63  THLEP----GEYEYKIDLVRRRDIACQHTAQHILSAAFLKVADLETV---SFLMGERVST 115

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
              ++  +    L+  ED  N+++     V    + +E+A       L   +   +VRVV
Sbjct: 116 IDLNAPFVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKLPNVE--GKVRVV 173

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G      CGG HV +TGEI L+ IV    ++  + RI  + G RA      +D
Sbjct: 174 KI-----GDFDVTACGGFHVENTGEIGLIKIVDTEKVKKVLTRIYFVAGDRALKDYREKD 228

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKIADVNF 796
           + LKSL+  L  S   ++ R E + EE ++      K      ++  +     KI     
Sbjct: 229 KLLKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKIGKYYL 288

Query: 797 MSHIISEVDSKELKSVMDALQKKI 820
                +  + K L   +   +  I
Sbjct: 289 YHFSGTPEEMKYLPKFLADRKDTI 312


>gi|299561738|gb|ADJ36941.1| alanyl-tRNA synthetase [Stylogaster neglecta]
          Length = 136

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 76/138 (55%), Gaps = 10/138 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           MLGN+SFG YFK      AW+ LTK   L + RLY+T +  DE        E  ++W  +
Sbjct: 1   MLGNWSFGDYFKTEICHWAWEFLTKRLMLPKDRLYVTYFGGDEKGGLLPDLECKQIWLDM 60

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
            G+ A+ II     DNFW M ETGPCGPCSEI +D+           +++    +EIWNL
Sbjct: 61  -GIKAEHIIPGNMKDNFWEMGETGPCGPCSEIHYDRIGD-RSVPELVNQDDPDVLEIWNL 118

Query: 204 VFMQFEQQNKQERFILPK 221
           VF+QF ++       LPK
Sbjct: 119 VFIQFNREQDGSLKPLPK 136


>gi|157363421|ref|YP_001470188.1| threonyl/alanyl tRNA synthetase SAD [Thermotoga lettingae TMO]
 gi|157314025|gb|ABV33124.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga lettingae TMO]
          Length = 369

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 25/303 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH- 557
           +I +      K     +++PFY +  GGQLGD G          +  V+++ EG+  H  
Sbjct: 3   KIKKVREENDKFLAFAEKSPFYPDGKGGQLGDRGKI----DTALVLGVEER-EGLICHIL 57

Query: 558 -AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            A VE G           IDY  R+ ++I HSA H+L  +   +  + +      +  + 
Sbjct: 58  DAPVEPGEH------TFEIDYLRRKDIAIQHSAQHILSASFLRV--ADIQTLSFHMGEEF 109

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
              D+   + IT   L+ +E+  N+I+   + V     N E A        L  K  + V
Sbjct: 110 STIDLDVPQ-ITEVVLQEVEEMANEIVRSCIKVEIVETNIESAKNLNLRKSLSEKVGEIV 168

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV +     G    + C G HVS+TG+I ++ IVS   ++  + R+  + G RA     
Sbjct: 169 RVVKI-----GDFDLSACAGFHVSNTGKIGIIKIVSWEKVKKTLTRVYFLAGNRALRDYS 223

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCHKIAD 793
            +   L+ L++ L  S   +  R   + E+ +    L    ++   +   +DL  HKI  
Sbjct: 224 IRVSVLRELSTLLTSSVSEMPARTRILLEKVKDQAALINRISEEYAKYLSKDLETHKIKG 283

Query: 794 VNF 796
           +N 
Sbjct: 284 INV 286


>gi|222099897|ref|YP_002534465.1| Alanyl-tRNA synthetase-related protein [Thermotoga neapolitana DSM
           4359]
 gi|221572287|gb|ACM23099.1| Alanyl-tRNA synthetase-related protein [Thermotoga neapolitana DSM
           4359]
          Length = 370

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 127/312 (40%), Gaps = 22/312 (7%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           ++  +I E   +  +V  +  ++PFY +  GGQLGD G   G    L++    K+  G  
Sbjct: 1   MKNIKIEEVVKNENQVIAIARESPFYPDGKGGQLGDRGKI-GPARVLKV----KEKNGYI 55

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H+   E             ID   R+ ++  H+A H+L  A      + +      +  
Sbjct: 56  LHYLDTELEP----GEYDCEIDLSRRKDIACQHTAQHILSAAFLKT--ADLETVSFHMGE 109

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           +    D+     I    L+ +ED  N+++ +   V    ++ ++A       +   K  +
Sbjct: 110 EISTIDLNAPF-ILEDVLEEVEDLANEVVRKCERVEISEVDLKEAETLNLRKIPEVK--E 166

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           ++RVV +     G      CGG HV +TGEI L+ IV    ++    R+  + G+RA   
Sbjct: 167 KIRVVKI-----GDFDITACGGFHVENTGEIGLIKIVDTEKVKKMFTRVYFVAGERALKD 221

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
              +D  ++SL + L  S   +  RV+ + E  +  +      KL      L    +A  
Sbjct: 222 YRSKDRLIRSLTTVLTTSSQELEKRVKNLLESVK--EKSSKLEKLAELCASLLAKSMASK 279

Query: 795 NFMSHIISEVDS 806
                 + + D 
Sbjct: 280 RVGRFEVYDFDG 291


>gi|281412503|ref|YP_003346582.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga naphthophila
           RKU-10]
 gi|281373606|gb|ADA67168.1| Threonyl/alanyl tRNA synthetase SAD [Thermotoga naphthophila
           RKU-10]
          Length = 373

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 129/324 (39%), Gaps = 24/324 (7%)

Query: 502 VEEAVSGQKVEVVFDQT-PFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           V+E V  +   +   +T PFY +  GGQLGD G   G    L++    K+ +G  +H+  
Sbjct: 8   VDEVVRDRDKIIAISRTSPFYPDGKGGQLGDRGKI-GPANVLKV----KEKDGYILHYLD 62

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                          ID   RR ++  H+A H+L  A   +         S    + +  
Sbjct: 63  THLEP----GEYEYKIDLVRRRDIACQHTAQHILSAAFLKVADLETV---SFHMGERVST 115

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
              ++  +    L+  ED  N+++     V    + +E+A       L   +   +VRVV
Sbjct: 116 IDLNAPFVLEDVLEEAEDLANEVVRSCERVEILEIEKEEAEKMNLRKLPNVE--GKVRVV 173

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G      CGG HV +TGEI L+ IV+   ++  + RI  + G RA      +D
Sbjct: 174 KI-----GDFDVTACGGFHVENTGEIGLIKIVNAEKVKKVLTRIYFVAGDRALKDYREKD 228

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLNVEDLSCHKIADVNF 796
           + LKSL+  L  S   ++ R E + EE ++      K      ++  +     KI     
Sbjct: 229 KLLKSLSRVLTTSTKELLKRAENLLEEVKEKSAKLDKLSEKYAEILSKVAEPEKIGKYYL 288

Query: 797 MSHIISEVDSKELKSVMDALQKKI 820
                +  + K L   +   +  I
Sbjct: 289 YHFSGTPEEMKYLPKFLADRKDTI 312


>gi|91094383|ref|XP_971062.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           [Tribolium castaneum]
 gi|270014911|gb|EFA11359.1| hypothetical protein TcasGA2_TC011516 [Tribolium castaneum]
          Length = 409

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 144/395 (36%), Gaps = 29/395 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              EV+ + T  + E GGQ  D G    D    Q+     KA              L   
Sbjct: 38  NGYEVILENTVLFPEGGGQPCDHGFL-NDQPVYQVIRRGDKA-------VHFIEKPLNVG 89

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   ID+  R      HS  HL+   L                   +  D+     IT
Sbjct: 90  DDVKGIIDWNRRLDHMQQHSGQHLISAVLIREFNFDTISWYLGEEVSYIELDI---PKIT 146

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRI----MNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             ++  +E+  N++I    PVV  I       E      +A  L   +   +RVV++E  
Sbjct: 147 QEQIDHVENICNELIRDQRPVVVNIFDENTPPEKLENYRSARDLPADHVGDIRVVTIEGI 206

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
           D     S +C GTHV++  ++  + ++ SE S R     +  ++G R  + L    ++ +
Sbjct: 207 D-----SNMCCGTHVTNLSQLQAIKLLHSEKSKRKDKVLLYFLSGNRVINRLDNCLKREQ 261

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L + LK +       VE++ +  + L          L V + +  K +   +      E
Sbjct: 262 KLTALLKTNPVQHPEFVEKLVQGNKSLNKNLQTVLKDLAVYEAAKLKESKEKYFFLHRKE 321

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
            D   +  +   L++  +S I   + +  EK A  +++  ++      A+         L
Sbjct: 322 ADPTFMSIL---LKEAGRSDIFQFLSVGDEKGAGNIVLYGDE-----KAISDLSPKICEL 373

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            GG G  + +  Q+   N +    A+  V  +  +
Sbjct: 374 LGGKGAAQGNKFQAKVTNLSNHKSAVKLVKEYFDQ 408


>gi|152002514|dbj|BAF73538.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 321

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 134/332 (40%), Gaps = 44/332 (13%)

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           +   LGSH+ + GS +    LR+D  H + IT   L  IE  VN +I +++PV    ++ 
Sbjct: 1   MQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQLSI 60

Query: 657 EDAIASGAAALLG---TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
            DA    A  L      KY D+VR+VS+        S  LCGGTH ++T ++    I+S 
Sbjct: 61  PDAQKKYATLLEKNQKAKYKDKVRIVSI-----DTFSVDLCGGTHATNTKDLEHFTILSC 115

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQ---------------- 753
            SI +GI RIEA+     +  L  +       L  L    K  Q                
Sbjct: 116 ESISSGIYRIEAVCNNNCQESLNAKLVPYQNDLHQLTQKAKSLQTQNLIFDVKNFPPITQ 175

Query: 754 --GNVVGRVEEIWEEYRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVD 805
              +++   + I  + + L L   K      +K+     +    +I     M  I  E  
Sbjct: 176 SYQDILNYQKHIKAQQQALVLFEKKVLEYHQKKMVQAESNFLPPQITK-KMMLTIEEEKP 234

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            + LK  ++ +  K    ++ L  +  EK   +            +A +L + +  ++  
Sbjct: 235 LEVLKFFINHIFDKYHLEVLFLSYVQPEKIVFLC------KSKTLHAGNLIKEAVSLVC- 287

Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           G GGG   +AQ G       +Q +  V + L+
Sbjct: 288 GSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 319


>gi|260835389|ref|XP_002612691.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae]
 gi|229298070|gb|EEN68700.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae]
          Length = 407

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 137/392 (34%), Gaps = 33/392 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EV+ + T  + E GGQ  D G    D   +++   +K+ + +           L     
Sbjct: 37  YEVILEDTILFPEGGGQPDDRGKI-NDVDVIRV--TRKQNQAVHF-----VETPLEVGSE 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D+  R      HS  HL+        G   +          +  D   +  IT  
Sbjct: 89  VKMEVDWTRRFDHMQQHSGQHLITAIAEAKFGYKTTSWDLGSKVSSIEMD---TPTITLE 145

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           +L  +E  VN+ I + +P+  R++           +  L   +   VRVV +E  D    
Sbjct: 146 QLSELEREVNECIRRQIPMTPRLLEPGSPELEQVRSRGLPDDHIGPVRVVEIEGIDHNT- 204

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               C GTHVS+   +  + ++S    + G   +  + G R    +    ++ K L   L
Sbjct: 205 ----CCGTHVSNLAHLQAIKLLSLEKGKKGKTNVMFVAGNRVLDFVGRAYDREKGLTGIL 260

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           K      V   +++ +  R          +    L  +        D  F  H     DS
Sbjct: 261 KCPPEEHVEMADKLQKSLRISNKTCTGLLRDVAVLEAQRYKSQPNRDPVFCLHRKEG-DS 319

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
           + +  + + +    ++ +++L    ++   + L+    D+++           A+VL G 
Sbjct: 320 EFMNIIANEVGN--ENALVLLSVGDEKGAGTFLLSGPADVVEAV-----GPKVAEVLEGK 372

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           G   R    Q       K    +      L++
Sbjct: 373 GAAKRGRF-QG---KATKLAN-LKLAEEVLRE 399


>gi|222480904|ref|YP_002567141.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453806|gb|ACM58071.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
          Length = 432

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/442 (20%), Positives = 155/442 (35%), Gaps = 69/442 (15%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E      S     +V D+T FYAE+GGQ  D G   G    + + DV ++   +      
Sbjct: 14  EFEATVESVDDRAIVLDETYFYAESGGQPADRGTIDG----ILLADVIERDGRVVHILDQ 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               +     ++   +D   R   +  H+A+H+L+ A        +   G  I+   +R 
Sbjct: 70  DAETLPEAGETVSAVVDDAFRTYCTRAHTASHVLYGAARRTC-DDLGYAGFDISATKVRV 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-------Y 672
           D+T ++P+  A+L  +E   N  +  +LPV    +  ++A A    A   TK        
Sbjct: 129 DLTTAEPLDDADLVELERLANRAVWDSLPVSWEALPEDEARAVDGIA-FNTKTEEGAMSG 187

Query: 673 NDRVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           ++ VRVV+V             E+      A CGGTHV +T EI  + ++  S+   G+ 
Sbjct: 188 SEAVRVVTVGERGGERDGEHGGENAPTWDVAACGGTHVRNTSEIGPISVLDRSNPGEGVT 247

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R+E   G  A              A+ L    G++   V+ + E   +L+         L
Sbjct: 248 RVEFAVGPTAIDREAAVHAAALDAATALDAQIGDLPDAVDRLRERADRLEADLQAATADL 307

Query: 782 NVEDLSCHKIADVNF--------MSHIISEVDSKELKSVMDA-LQKKIQSGIIMLVGI-- 830
               L    + +V+             + + D  +L+      L +      I  VG   
Sbjct: 308 LAARLREFPVNNVDADGDDGATWAVGTVDDADPNDLREPAQRVLAEADAPDAIAAVGTGD 367

Query: 831 ---------------SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
                            +  A     V + + D F                     P  A
Sbjct: 368 SPFVVAAVAEEAVGGGDDDNAPNAGAVVDAVTDEFGGGGGGG--------------PTFA 413

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
           Q GG + +        V ++L+
Sbjct: 414 QGGGLDADP-----DAVVAWLR 430


>gi|241950131|ref|XP_002417788.1| alanyl-tRNA synthetase-related protein, putative [Candida
           dubliniensis CD36]
 gi|223641126|emb|CAX45502.1| alanyl-tRNA synthetase-related protein, putative [Candida
           dubliniensis CD36]
          Length = 449

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 145/399 (36%), Gaps = 26/399 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           ++  V  + T  + E GGQ  D G      D   +++  V +           +   ++ 
Sbjct: 62  KEFGVELEDTILFPEGGGQPYDKGTITILPDNKIIEVKSVLRDKLKAVH----LVNELIE 117

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L ID+  R  +   H+  HLL     T     +S +   +  D     +     
Sbjct: 118 PGTQVSLNIDWNRRIDIMQQHTGQHLLSAVFDTYELETLSWS---MGEDI--NYIELPTK 172

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           IT   +  +++ VN +I + +P+   ++  +        + L   Y+    ++ +     
Sbjct: 173 ITQELIIEVQNKVNQLIVEAIPIT--VVTPDQHGHEIDVSHLPDDYDLSKGIIRIVK--I 228

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   +  C GTH++ST +I  + ++ +S IR G  R+    G R  ++L  + E L++++
Sbjct: 229 GELDANPCCGTHLTSTAQIQSIVLLHQSPIRGGHSRLYFTCGGRVANYLRKEHEILRNVS 288

Query: 747 S-FLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
           +  L  +   V  +VE +   Y+K         K    +    +      D N     + 
Sbjct: 289 TNQLSCAIEVVEEKVELLSLNYKKANSTLNNLLKELASIEANKIFQKFKNDHNNKLAYVY 348

Query: 803 EVD-SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED----LLDRFNAVDLAR 857
             D  + L SV   L   I       V IS  +   +L     +     +    A +L  
Sbjct: 349 RADLPEYLTSVQKELTTLINEDKTGDVDISNNQTLVLLSGAAPNGGTIKISGPKAEELQV 408

Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
                L    GGG+    Q       K +  +  V  +L
Sbjct: 409 ELKSKLSNLKGGGKGSSFQGKITKFEKGE--LEAVLKYL 445


>gi|312379150|gb|EFR25519.1| hypothetical protein AND_09072 [Anopheles darlingi]
          Length = 411

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 139/383 (36%), Gaps = 33/383 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++++   S     V+F+ T  + E GGQ  D G  +GD     I  V+K A+ I      
Sbjct: 17  KVIQCDKSDGGYAVIFEDTILFPEGGGQPYDHG-LVGDRKVKSI--VRKGAQAIHFFEGD 73

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E    +    +V  +D+  R      HS  HL+       L  +            +  
Sbjct: 74  EETAPFKVGDEVVQRLDWDRRFDHMQQHSGQHLITAIFDRELKYNTKSWWLGSESSYIDL 133

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDR 675
           D   +K ++  +L  +E   N +I    PV  ++   +D         A   L    +  
Sbjct: 134 D---AKDVSVEQLALVEKICNQLIVDCTPVGVKVYEADDPALKSDVTRATRGLPEDVSGP 190

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +RVV++E  +     S +C GTHV +  ++  + ++S          +  + G R    L
Sbjct: 191 LRVVTIEGVE-----SNMCCGTHVRNLAQLQTIKLLSVEK-AKNKCLVHFLVGGRVLRKL 244

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIA 792
               E+       L     + V  V ++    R  Q +  K   +L     E L+   +A
Sbjct: 245 TECYEREVQFNGLLNGGASSHVDLVRKLQSTVRSTQRVAKKLSTELATLEAEKLNQQPVA 304

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--KKASVLIVVTEDLLDRF 850
              F  H     +S  + + +  +  K+    + L     +   K  +++        + 
Sbjct: 305 PKYFTHHRCDGPESDFINTFLRMV--KLPDCFLFLTNAETDNSGKGQLVL--------QG 354

Query: 851 NAVDLARLSAK--VLGGGGGGGR 871
            A D+A L  +   +  G G G+
Sbjct: 355 KAEDIAALGPEMCTILEGKGNGK 377


>gi|330837250|ref|YP_004411891.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta coccoides DSM 17374]
 gi|329749153|gb|AEC02509.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta coccoides DSM 17374]
          Length = 424

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/405 (20%), Positives = 148/405 (36%), Gaps = 45/405 (11%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIFVHHAIVER 562
            +  +V D T FY E GGQ GD G         GD + +Q+           +H  + + 
Sbjct: 37  NQPALVLDCTIFYPEGGGQPGDRGIIRKRGIDKGDSLTVQVVATITDEASRILHI-LDKE 95

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-----SHVSQNGSCITPDGL 617
             L     + L +D+ +R      H+A H++     T+ G      H    G  I  D  
Sbjct: 96  TSLVPGDDVTLELDWGHRYAYMQMHTAQHMISGLAHTLFGIGTLSVHQGAEGLTIETDRS 155

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
                    I    +  +E+ V   I +++PV++R ++  +A   G    +  K    VR
Sbjct: 156 D--------IPMETIIILEEAVTCAIHRDIPVISREVSHAEATRLGLRRSI--KVEGDVR 205

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +VS+E  D        CGG HV+ TGE+  +      S+R+ + R++ +TG         
Sbjct: 206 IVSIEGIDL-----MACGGVHVARTGEVRAVRYAGSESVRSHV-RMKWLTGDSVLETERQ 259

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIW--EEYRKLQLIHAKRKLQ----LNVEDLSCHKI 791
               +  L + L     ++V  V  +       + Q   A  +      L     +    
Sbjct: 260 ARAIIGELTTVLSAPPEDIVSSVTALQVSAMQSRHQAEQAMEEAAFLHLLAKAASTPDTY 319

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                ++  +      ELK V  A+      G I+L    + +  +   +  +D    F 
Sbjct: 320 GGTPVVTWDVPAASFMELKHVAAAI---PACGSIILCATRETEGKTAWCIALKDAACNF- 375

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             +  R    +  G  GGG+  + Q   P       A+  +  FL
Sbjct: 376 --ETIRTEVLLPLGAKGGGKSPLWQGIAPVP-----AVRLIEDFL 413


>gi|313233353|emb|CBY24467.1| unnamed protein product [Oikopleura dioica]
          Length = 544

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 143/401 (35%), Gaps = 62/401 (15%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +  +++  +T F+ E GGQ GD G          +    ++ E        +    +   
Sbjct: 35  ECFKILLTETIFFPEGGGQPGDNGKITWGDDSSSVFYTVREGENAVH----LCDKQVPEG 90

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+ +R      HS  HL+            + +         +  +  S+P+T
Sbjct: 91  TEVSLEVDWDSRFDNMSQHSGQHLISAIFEQ---PEFNASTISWNLGDDKSFIELSRPVT 147

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E++ +E+  N+ I +   V   ++  ++ +  G   L    +   +RVV+++  D   
Sbjct: 148 DEEVQRVENMCNEAIRKRTRVSVELLTSKEDLRKGCKDL-PKDFAGPIRVVNIDGID--- 203

Query: 689 HSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
               +C GTHV S  ++  + ++  E     GI  +  + GQR    L       +    
Sbjct: 204 --QNMCCGTHVESLSDLQAIKLLHQEKKKGKGI--VWFVCGQRVLKTLADSWNVSREACK 259

Query: 748 FLKVSQGNVVGRVEEIW-------EEYRKL---------QLIHAKRKLQL---------- 781
            +   +  +  R+E +        +  + L         + +  K K++           
Sbjct: 260 KMSCKEEEIPERIENLQVSNRGALKATKNLVSELGSTLAEALQTKFKIEKPESTVLPDCK 319

Query: 782 ----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKA 836
                +++       D   +     ++  + L    D L + ++  G I+ +   +E   
Sbjct: 320 KDNEQLKNSLRDITLDGKVLKLHRPDLGPEFLAPFADNLAQLVEKEGKIIFLSCGRENVG 379

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKV---LGGGGG---GGR 871
           ++ ++  E         ++ + S K    +  G G   GGR
Sbjct: 380 NIYVIGDE---------EIIKASGKQVLEIMDGKGFVKGGR 411


>gi|50552115|ref|XP_503532.1| YALI0E04246p [Yarrowia lipolytica]
 gi|49649401|emb|CAG79113.1| YALI0E04246p [Yarrowia lipolytica]
          Length = 415

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 135/365 (36%), Gaps = 21/365 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           K EV  + T  + E GGQ  D G    +   + +  V++  +G+   H       +    
Sbjct: 42  KYEVELEDTILFPEGGGQPADLGTLSYEETSVPVNYVKR--DGLIAKH--ETDSPIEVGT 97

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ + +++  R      H+  HLL                   +       V   K +T 
Sbjct: 98  TVNVDLEWARRFDHMQQHTGQHLLSAIF-----DTRKLETLAWSLGDKFCYVELPKRVTR 152

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV--VSVEYEDGG 687
            E+ +++  VN +I Q+L + T I+  E+  A+   +++  K  D   V    +   + G
Sbjct: 153 EEMDAVQAEVNRVIQQDLKITTTIITNEEEKAAADPSVV-EKIPDDYDVNNGVIRVVNIG 211

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 C GTH++ST EI  + ++   ++R    R+  + G R   +       +K + S
Sbjct: 212 DIDHNPCCGTHLNSTREIGSVALLHTQAMRGSNCRVFFVCGDRVHKYASEAHRTIKMVNS 271

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISE 803
            L     ++  ++  + +  +     + ++     V   + H         N +     E
Sbjct: 272 HLSCLTEDIENKILALNQNLKD--ASNREKMWMAEVATFTAHNAKQDLETKNVVFVYKPE 329

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
                L  +   +    +    +L         +++I+   D LD  +A  +  +   V 
Sbjct: 330 ASLDFLNVIAKEIGDLAEGKTAILACGQGTAGGAIMIIG--DKLDEVSA-KVKDIVVNVK 386

Query: 864 GGGGG 868
           GGG G
Sbjct: 387 GGGKG 391


>gi|241715963|ref|XP_002413545.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215507361|gb|EEC16853.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 410

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 493 KAIVQQGEIVEEAVSGQK-----VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV- 546
           K +      +E   +G+K      E+V + T  + E GGQ  D G A G    + +  V 
Sbjct: 17  KVVKCDAAFLEVLTNGKKEKQAGYELVLEDTVLFPEGGGQPDDRGTANG----VPVLRVF 72

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K    I   H             + L +D+  R      HS  HL+          H +
Sbjct: 73  RKNGHAIHFVH-----SPFTVGEEVALEVDWTRRYDHMQQHSGQHLITAVAEDQFNWHTT 127

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGA 664
                +  +    ++     I +A ++ +E  VN+ I + +PV  ++     E+      
Sbjct: 128 SW--SLGDEVSFVELDAPAGIQAAGVQRLEAAVNEKIRECVPVSVKLYEHGSEELNGVRT 185

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              L     D +RVV++   D     S  C GTHVS+   +  + ++     + G   + 
Sbjct: 186 RLKLPEGEGDSIRVVTIAGVD-----SNTCCGTHVSNLSHLQAIKLLYTEKGKQGKTNLY 240

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLN 782
            + G R   +L    ++ +SL + LK          E++ +  +      +   R L L 
Sbjct: 241 FLVGNRVLGYLDKAVKRERSLNTLLKCGPEEHAAMAEKLAKSLKLANKNALSVLRDLALA 300

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS--VLI 840
              L         F S    E D++ +    + +  K     ++L   + ++K S   L+
Sbjct: 301 EAKLFKQLDPLPKFFSFHRREADAEFMSIFANEVGNKD----VLLFLTAGDEKGSGQFLL 356

Query: 841 VVTEDLLDRF 850
              +D++  +
Sbjct: 357 AGRDDIVSAY 366


>gi|190346550|gb|EDK38661.2| hypothetical protein PGUG_02759 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 449

 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 149/408 (36%), Gaps = 45/408 (11%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             V    T  + E GGQ  DTG  +  D  ++ ++ V +  EG+   H  +    +    
Sbjct: 62  YAVELKDTILFPEGGGQPYDTGSIVLPDSTKVSVSKVVR--EGVTALH--ITPTPIEPGT 117

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L I++  R      H+  HLL   L +     +  +            V     ++ 
Sbjct: 118 NVSLEINWDRRLDHMQQHTGQHLLSAVLDSYKIETLGWSLGEKI-----NYVELPMKVSD 172

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDG 686
             ++ +   VND I + +P+   ++  +        + +   Y      VRVV +     
Sbjct: 173 EIVEEVSRKVNDYIFKAIPIE--VVTPDQHGGELDISHIPEDYDLSKGVVRVVKI----- 225

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   +  C GTH++ST +I  + ++ +++IR G  R+    G R           LK+  
Sbjct: 226 GDLDANPCCGTHLTSTSQITAISLLHQTNIRGGNSRLHFCCGHRVAKLASESSAILKNAG 285

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
           + L      +  ++E +   Y+K         K       + +                +
Sbjct: 286 ALLSCQSDEITSKIELLNFNYKKANSTVSNLLKEIAASEAKRIYDSFKEGSQVEYAFRED 345

Query: 804 VDS-------KELKSVMDALQKKI-----QSGIIMLVGISKEK-KASVLIVVTEDLLDRF 850
            +        K+L + ++  + +       + ++ + G  KE  K  V I+  +      
Sbjct: 346 ENPEYVPLLQKQLLTFINQDKSRGIDLEKTNTVVFINGERKENTKGMVKIMGPQAQT--I 403

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +A +L    + + GGG G     M Q       K +  +A V  +L+K
Sbjct: 404 SA-ELKSRLSNLAGGGKG----AMFQGKITGLGKIE--LASVIEYLEK 444


>gi|299561732|gb|ADJ36938.1| alanyl-tRNA synthetase [Zodion cinereum]
          Length = 126

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 9/123 (7%)

Query: 65  QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124
           QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG YFK+     AW+ L     + +  
Sbjct: 1   QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICLWAWEFLVCSLQIPEDN 60

Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176
           LYIT +  DE        E  ++W  I G+ +D I+  +  DNFW M +TGPCGPC EI 
Sbjct: 61  LYITYFGGDEKSDLAPDVECKQIWLDI-GVPSDHIVPGSMKDNFWEMGDTGPCGPCCEIH 119

Query: 177 FDQ 179
           +D+
Sbjct: 120 YDR 122


>gi|299561742|gb|ADJ36943.1| alanyl-tRNA synthetase [Drosophila sp. JFG-2010]
          Length = 137

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 77/139 (55%), Gaps = 10/139 (7%)

Query: 91  EMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKK 142
           EMLGN+SFG YFK      AW  LT+   L + RLY+T +  DE        E  ++W  
Sbjct: 1   EMLGNWSFGDYFKXEICSWAWQFLTERLRLPKDRLYVTYFGGDEASGLQPDLECKQMWLD 60

Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWN 202
           + GL+ + I+  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIWN
Sbjct: 61  L-GLTPEHILPGSMKDNFWEMGETGPCGPCSELHFDRVGG-RSVPELVNMDDPDVLEIWN 118

Query: 203 LVFMQFEQQNKQERFILPK 221
           LVF+QF +++      LPK
Sbjct: 119 LVFIQFNRESDGSLRPLPK 137


>gi|157124803|ref|XP_001660531.1| alanyl-tRNA synthetase [Aedes aegypti]
 gi|108873862|gb|EAT38087.1| alanyl-tRNA synthetase [Aedes aegypti]
          Length = 399

 Score =  161 bits (406), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 35/393 (8%)

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
             S +K  + +    E+ VSG   +V F+ T  + E GGQ  D G   G     ++ +V 
Sbjct: 7   EDSFLKEYIAKVVACEKVVSG-GFQVTFEDTVLFPEGGGQPSDHGWLNGT----EVRNVI 61

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           +K     VH    E    +    +   ID+  R      HS  HL+        G     
Sbjct: 62  RK-GATAVHFLDGEEVPFQVGEEVHQKIDWDRRFDHMQQHSGQHLITAIFDREFGYSTKS 120

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAA 666
                    +  D   +K +T  +L  +E   N +I    PV  ++   +D A+ S A  
Sbjct: 121 WWLGSEDSFVDLD---TKDVTKEQLVKVETICNQLIVDCTPVDVKVYQPDDPALKSEATR 177

Query: 667 L--LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              L    +  +RVV+++  +     S +C GTHV +  ++  +  ++      G   + 
Sbjct: 178 TRGLPEDVSGPLRVVTIDGIE-----SNMCCGTHVKNLAQLQAIKFLNVEK-SKGKCLVH 231

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            + G R    L    E+     + L     + V  ++++    +  Q +  K   +L + 
Sbjct: 232 FLVGNRVLKKLGDCYEREIQFNTLLNGGPLSHVDLIKKMLTTIKNSQKVCKKFTNELAL- 290

Query: 785 DLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASV 838
            +   K+  +N     F  H +  +DS  + +    L+    S     +    E +K  +
Sbjct: 291 -VEVAKVNALNPKPRFFSVHRLDGMDSDFIGTF---LRNVNMSECFFFLTNGDETRKGQM 346

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           ++    D + +    D      K L  G G G+
Sbjct: 347 VLQGKPDDIAKI--GD---AICKAL-DGKGSGK 373


>gi|146418128|ref|XP_001485030.1| hypothetical protein PGUG_02759 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 449

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 145/408 (35%), Gaps = 45/408 (11%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             V    T  + E GGQ  DTG  +  D  ++ ++ V +  EG+   H  +    +    
Sbjct: 62  YAVELKDTILFPEGGGQPYDTGSIVLPDSTKVSVSKVVR--EGVTALH--ITPTPIEPGT 117

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++ L I++  R      H+  HLL   L +     +  +            V     ++ 
Sbjct: 118 NVSLEINWDRRLDHMQQHTGQHLLSAVLDSYKIETLGWSLGEKI-----NYVELPMKVSD 172

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDG 686
             ++ +   VND I + +P+   ++  +        + +   Y      VRVV +     
Sbjct: 173 EIVEEVSRKVNDYIFKAIPIE--VVTPDQHGGELDISHIPEDYDLSKGVVRVVKI----- 225

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   +  C GTH++ST +I  + ++ +++IR G  R+    G R           LK+  
Sbjct: 226 GDLDANPCCGTHLTSTSQITAISLLHQTNIRGGNSRLHFCCGHRVAKLASELLAILKNAG 285

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
           + L      +  ++E +   Y+K         K       + +                +
Sbjct: 286 ALLSCQSDEITSKIELLNFNYKKANSTVSNLLKEIAASEAKRIYDLFKEGSQVEYAFRED 345

Query: 804 VDS-------KELKSVMDALQKKI-----QSGIIMLVGISKEK-KASVLIVVTEDLLDRF 850
            +        K+L + ++  + +       + ++ + G  KE  K  V I+  +      
Sbjct: 346 ENPEYVPLLQKQLLTFINQDKSRGIDLEKTNTVVFINGERKENTKGMVKIMGPQAQT--- 402

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
               +       L    GGG+  M Q       K +  +A V  +L+K
Sbjct: 403 ----ILAELKSRLSNLAGGGKGAMFQGKITGLGKIE--LASVIEYLEK 444


>gi|183011986|gb|ACC37922.1| alanyl-tRNA synthetase [Themira nigricornis]
          Length = 132

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/133 (43%), Positives = 75/133 (56%), Gaps = 14/133 (10%)

Query: 45  PFKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG 99
            FK +F G   P      +  V   QKC+RAGGKHNDLD+VG+   HHTFFEMLGN+SFG
Sbjct: 1   QFKPVFLGTADPNSEMSKWIRVANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFG 60

Query: 100 GYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKI 151
            YFK      AW+ LT+   L + RLY+T +  DE        E  ++W ++ GL  + I
Sbjct: 61  DYFKREICTWAWEFLTERLCLPKDRLYVTYFGGDEASGLEPDYECKQIWTEL-GLKPEHI 119

Query: 152 IRITTNDNFWSMA 164
           +     DNFW M 
Sbjct: 120 LPGNMKDNFWEMG 132


>gi|300711202|ref|YP_003737016.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299124885|gb|ADJ15224.1| alanyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 408

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 142/377 (37%), Gaps = 38/377 (10%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E           EVV D+T FYAE GGQ  D G   G    + + DVQ +   +   H++
Sbjct: 13  EFEARIDRVDGREVVLDRTYFYAEGGGQPADRGEIDG----VAVRDVQTRDGTVV--HSL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   + T  ++   ID   R      H+A+H+L+ A   +L   +   G  I     R 
Sbjct: 67  ADGSGVETGRTVACEIDPAFRTYCMRTHTASHVLYGAGRRLL-DDLGYGGFDIDERKARI 125

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLGTK 671
           D   S  I    L  +E   N  + +  PV    +   DA A  A A        +    
Sbjct: 126 DFETSTDIDDDVLIELEVLANRTVWEGRPVTWETVPVADARAREAVAFNTRTEEGVFEED 185

Query: 672 YNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
               VR+VS+  +            A CGGTHVS+T EI  + ++  S+   G+ R+E  
Sbjct: 186 RG--VRIVSIGADRTPTSTAESWDDAACGGTHVSNTREIGPISVLGRSNPGEGLTRVELA 243

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-------RVEEIWEEYRKLQLIHAKRKL 779
            G  A  H        +  A  L V   ++         R+ E+ +E   L    A  ++
Sbjct: 244 VGPAAIEHRTETRRAAERAARELGVGVPDLPAEIRRRRERITELEDERAALLGRIADARI 303

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
               ED+         ++   +  VDS  L     AL      G   +  +  +++ +  
Sbjct: 304 DALGEDVLERD--GERWLVGSVPHVDSDTLLERARALA----GGDCEVAALVSDERPTTA 357

Query: 840 IVVTEDLLDRFNAVDLA 856
           +V + +  D   A  + 
Sbjct: 358 VVASANGTD---AGAVI 371


>gi|299561760|gb|ADJ36952.1| alanyl-tRNA synthetase [Pipunculus sp. JFG-2010]
          Length = 136

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 10/138 (7%)

Query: 92  MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKI 143
           MLGN+SFG YFK+     AW+ LT    L + RLY+T +  DE        E  + W  +
Sbjct: 1   MLGNWSFGDYFKKEICAWAWEFLTNRLKLPKERLYVTYFGGDEDSGLSPDLECRQTWIDL 60

Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNL 203
            GL  + ++  +  DNFW M E+GPCGPCSE+ FD+           + +    +EIWNL
Sbjct: 61  -GLKPEHVLPGSMKDNFWEMGESGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNL 118

Query: 204 VFMQFEQQNKQERFILPK 221
           VF+Q+ ++      +LP+
Sbjct: 119 VFIQYNREADGSLKMLPR 136


>gi|83816272|ref|YP_445267.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757666|gb|ABC45779.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 260

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                       +V D T FY E GGQ  D G    DG    + DVQK+   +  +    
Sbjct: 36  FTASVTDATDDYIVLDGTYFYPEGGGQPADHGTLHWDGGSAPVVDVQKEHGAVRHYIDDR 95

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E             ID   RR L   H+A H+L   +  + G+     G+ I  D  R D
Sbjct: 96  EGERPEQGDEATGQIDEARRRTLRRMHTAQHVLSKVVLDVFGAQT--AGNQIHTDRSRID 153

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDR 675
                  +  ++  IE+  N  I Q+LPV  + M R  A        G   L+   + D 
Sbjct: 154 FE-PADFSEEDVAVIEERTNTAIEQDLPVEKKEMERARAEEHTPEGRGLLNLIPD-HVDP 211

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +R+V +     G      CGGTHV  T +I  + I + +S  A + RIE  
Sbjct: 212 LRMVQI-----GDLDLCPCGGTHVDRTRDIGRIRITNRTSKGAEVDRIEFK 257


>gi|254564877|ref|XP_002489549.1| Putative protein of unknown function with strong similarity to
           alanyl-tRNA synthases from Eubacteria [Pichia pastoris
           GS115]
 gi|238029345|emb|CAY67268.1| Putative protein of unknown function with strong similarity to
           alanyl-tRNA synthases from Eubacteria [Pichia pastoris
           GS115]
 gi|328349971|emb|CCA36371.1| metal-dependent hydrolase [Pichia pastoris CBS 7435]
          Length = 411

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 134/376 (35%), Gaps = 32/376 (8%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
               Q   V  + T  + E GGQ  DTG    +     +  V +       +        
Sbjct: 43  IGENQLYLVELEDTVLFPEGGGQPSDTGIVASEDHSFDVIYVGRNGLNAVHYVIAPGDLP 102

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+   ++V+++++++R      H+  HLL   L           G   T D +   V   
Sbjct: 103 LKVGDNVVVSVNWESRWDHMQQHTGQHLLSALLKIHFDVPTLGWGMG-TGDTVLNYVEIP 161

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +   E++ +   +   I QNLP+     + E     G+            R + + + 
Sbjct: 162 RKLEDFEIEQLNLQIKATINQNLPISVVEHD-EIHEEKGSM-----------RDIRIGHL 209

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           D        C GTH+ S+ +I  +  +++ S +    R++ I G R    +      LK+
Sbjct: 210 DNN-----SCCGTHLQSSLQIKNVIALNQISGKKTNTRLQFIVGDRVNDFVSQSFSILKN 264

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L + L      +  +V ++    +     +    K   ++  +++       +   S   
Sbjct: 265 LRNQLSCPDELIPEKVAQLNSSIKASNTTEKKMLKELAEIKAQEIVASPSKIIFVDSEFS 324

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
           ++  S   K    A++ K     ++L+    +    V     +D  D  ++V    L   
Sbjct: 325 NDFTSNIFKLSNKAIKDKT----VILLSGKNQGSLIVYGENVKDTTDGISSV----LEKS 376

Query: 862 VLGGGGGGGRPHMAQS 877
           VL    GGG P   Q 
Sbjct: 377 VL---KGGGSPSKYQG 389


>gi|297737255|emb|CBI26456.3| unnamed protein product [Vitis vinifera]
          Length = 267

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 117/321 (36%), Gaps = 65/321 (20%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519
            D    +   K                   S++KAI    E +E A +G +V ++ + T 
Sbjct: 1   MDADATATLHKMGVAATDDISKFTWFEDHESVIKAIYTGTEFLESAAAGDEVGIILETTS 60

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV--ERGILRTEMSLVLTIDY 577
           FY E GGQ+ DTG   G     Q+++VQ    G  +H   V  E G       ++  +DY
Sbjct: 61  FYTEKGGQIFDTGSLEGSCGSFQVSNVQIY-GGFVLHIGSVTGEIGRFSVGDKVICKVDY 119

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R+ ++ NH+ TH+L+ A+  +LG+HV Q GS + P+ LRFD +H             +
Sbjct: 120 DRRKLIAPNHTYTHMLNFAMREVLGNHVDQKGSIVLPEKLRFDFSH------------GN 167

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + N  I       T I N  +A A                                    
Sbjct: 168 SHNSWIYSG----THISNTREAKA------------------------------------ 187

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
                       ++SE  I  GIRRI A+T   A   +       + + +  +     + 
Sbjct: 188 ----------FALLSEEGIAKGIRRITAVTTDSAFKAMELAFSLEQEIDAASEAEGSLLE 237

Query: 758 GRVEEIWEEYRKLQLIHAKRK 778
            +V  +        +   K+ 
Sbjct: 238 KKVASLRSRVDAAPIPAPKKA 258


>gi|167950024|ref|ZP_02537098.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
 gi|110589400|gb|ABG77209.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 167

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 93/160 (58%)

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            G+  ++ D +K+   +F H   +E G L     +   ++   R+  ++NHSATHLLH A
Sbjct: 6   GGVLFEVEDTRKQGGDVFGHIGKLEEGSLAVGDPVTAEVNAFTRQATALNHSATHLLHAA 65

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L  +LG HV+Q GS +  + LRFD +  +P++  +L+ +E  VN+ I QN  V TRIM+ 
Sbjct: 66  LREVLGDHVAQKGSLVDDERLRFDFSQFEPVSREQLQRVEQRVNEQIRQNHMVETRIMSL 125

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           EDA +SGA AL G KY+++VRV+ +      +     C G
Sbjct: 126 EDARSSGAMALFGEKYDEQVRVLRMGDFSTELVRRHPCEG 165


>gi|115929936|ref|XP_001192813.1| PREDICTED: similar to Mgc2744-prov protein [Strongylocentrotus
           purpuratus]
 gi|115943037|ref|XP_787006.2| PREDICTED: similar to Mgc2744-prov protein [Strongylocentrotus
           purpuratus]
          Length = 411

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 26/360 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            E++ + T  + E GGQ  D G        +++  + +K               L     
Sbjct: 40  FELILEDTVLFPEGGGQPDDRGTINN----VEVLRITRKGADAIH----FVTSSLEPGSE 91

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   +D++ R      HS  HL+        G   +          +  D   +  I+  
Sbjct: 92  VTQKVDWKRRFDHMQQHSGQHLVTAIADNKHGWKTTSWDLGREKSFIELD---TPKISQE 148

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +L+ +E + ND I + +P+  R++      +       L   +   VR+V +E  +    
Sbjct: 149 QLEELEKDTNDAIRKCIPMTPRLVELGSKELQEVRTRGLPDDHVGLVRIVEIEGIEAN-- 206

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              LC GTHVS+   +  + ++     + G   +  + G R  S+L       K+L   L
Sbjct: 207 ---LCCGTHVSNLSHLQAIKLLGAEKGKKGKTNLYFLAGNRVLSYLGKCYNNEKALNLSL 263

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSK 807
           K      V +V++I +  +           +L V +   +K+       +S    E DS+
Sbjct: 264 KCGPDEHVQQVDKIQKSLKTANKTSLTVLRELAVLEARHYKLNPNRDPLLSIHRKEGDSE 323

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            +  V + +    ++ +++L    +      L+    D+++     +     A +L G G
Sbjct: 324 YMIIVANEVG--PENALMLLSTGEENGAGLFLVAGPTDIVE-----EAGPRVASLLEGKG 376


>gi|325970470|ref|YP_004246661.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta sp. Buddy]
 gi|324025708|gb|ADY12467.1| Alanyl-tRNA synthetase, class IIc [Spirochaeta sp. Buddy]
          Length = 394

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 89/398 (22%), Positives = 147/398 (36%), Gaps = 40/398 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             +V D T  Y E GGQ GD G   G    + + +  K  +    HH  V          
Sbjct: 26  GALVLDSTICYPEGGGQSGDIGTISG----VTLLNTTKDDDHTIYHH--VAEHSFVVGAQ 79

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVTHSKPITS 629
           + + +D+ +R      H+A H+    L T    H S     +   + +    T +  I  
Sbjct: 80  VGIVLDWNHRYHYMQMHTAQHVASGLLFT----HFSIQTVSVHQGERILTIETDAVAIEP 135

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           +    +ED VND++ QN PV   +  +  A   G    +  +  D VR+V VE  D    
Sbjct: 136 SLCYQLEDLVNDVVRQNHPVHYEVHTQSSAQTLGLRRSIKVE-GDGVRLVVVEQVD---- 190

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +  CGG HV +T EI   +   +  IR G  R+    G  A+  +   +     L    
Sbjct: 191 -TVACGGLHVGNTSEIEFFHYAGQEKIR-GHIRLIFTVGALAKEEIRKVENVAAELGVLF 248

Query: 750 KVSQGNVVGRVE-------EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-SHII 801
                ++V   +       ++  E RK Q + AK  L   V +     +A V  +   I 
Sbjct: 249 SAPLQDLVDAAKAVVSSAVQLKSELRKAQQLLAKLSLASLVAE--AELVASVPVVYWKIP 306

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AVDLARLS 859
            E++ K++              +++      + + S L+ +        +  A   A L+
Sbjct: 307 QEIEMKDVPQAFTE-----YDELVLCAAKESDGQLSWLVGLQGKATGLLDFPAKKPALLA 361

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A     G GGG+  + Q         D   A   + LK
Sbjct: 362 A---IQGKGGGKAPLYQGSAK--ADCDTFFAAFGALLK 394


>gi|160902574|ref|YP_001568155.1| threonyl/alanyl tRNA synthetase SAD [Petrotoga mobilis SJ95]
 gi|160360218|gb|ABX31832.1| Threonyl/alanyl tRNA synthetase SAD [Petrotoga mobilis SJ95]
          Length = 369

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 140/381 (36%), Gaps = 50/381 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           +I+     G       +  PFY +  GGQLGD G         ++    +          
Sbjct: 6   KIINVIKQGDNYFATIENNPFYPDGKGGQLGDRGKI----DIAEVLGTTE--------TG 53

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNGSCIT 613
           ++    L         ID + R  ++  H+  H+L  A   I     +   + +  S I 
Sbjct: 54  VILNKHLNPG-EYFYEIDKKRRFDIAQQHTGQHILSAAFERIGSLKTVSFKMGEEYSTID 112

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            DG        + I    L   ++  NDII++ + V     ++E A        L  K +
Sbjct: 113 LDG--------QNIEEELLNKAQELSNDIISKCIEVEEIYTDKERAQKYNLRKPLSDKIS 164

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
             VR++ +          + CGG HV +TG I LL I +   ++  + R+  + G RA +
Sbjct: 165 GEVRLIKI-----DDFDISACGGFHVKNTGNINLLKITNTEKVKGNLTRVYFLAGLRAIN 219

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHK 790
               +D  LK+++S L     ++  +VE +  E +  +      A++      +DL    
Sbjct: 220 DYSQKDSILKNISSILTSGLYDLENKVESLLNENKDYKNRMKKLAEKNAYYLAKDLIEKA 279

Query: 791 --IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +     + +   +  +  L   +D L+            I +++K     + +++   
Sbjct: 280 LVVNKNKIVYYKKEDETADFLHKYVD-LKD--------YTLIVEDEKDKTFSIFSKN--- 327

Query: 849 RFNAVDLARLSAKVLGGGGGG 869
             N  +L           GGG
Sbjct: 328 -INCKELIEKLKTNNNIKGGG 347


>gi|126275956|ref|XP_001386929.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
           [Scheffersomyces stipitis CBS 6054]
 gi|126212798|gb|EAZ62906.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Pichia
           stipitis CBS 6054]
          Length = 430

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 142/394 (36%), Gaps = 34/394 (8%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFV 555
           +  ++ +EA    K  V  + T  + E GGQ  D G   + +   + +T V +       
Sbjct: 36  KNKKVKDEAPKEIKYAVELEDTILFPEGGGQPYDKGSLTLPNNEVVHVTSVLRDKLTALH 95

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
               +    +     + + +D+  R  L   H+  HLL     T     +S +   I   
Sbjct: 96  ----ITDAPVEPGTEVTVDLDWDRRIDLMQQHTGQHLLSAVFDTYKLETLSWSMGEII-- 149

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-- 673
                +   + ++   +  +   VN +I + +P+   ++  +        + +   Y+  
Sbjct: 150 ---NYIELPEKVSDEIVAEVNAKVNKLIFEAIPIE--VVTPDQHGGELDYSHIPDDYDLS 204

Query: 674 -DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
              +R+V +   D        C GTH+SST +I  + ++ + S+R G  R+  I G R  
Sbjct: 205 QGIIRIVKIGQLDAN-----PCCGTHLSSTSQIQSMSLLHQVSVRGGHSRLYFICGTRVY 259

Query: 733 SHLMGQDEKLKSLASF-LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL----S 787
            +L  Q E LK ++   L      V  +V  +   YRK          +L  ++     +
Sbjct: 260 KYLSKQHELLKLVSGTHLSCQIEEVADKVALLNSNYRKALSREQNLLKELAADEASRIFT 319

Query: 788 CHKIADVNFMSHIISEVDSKEL----KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             K  D        +E   + L    K +   +    +SG ++L         S    + 
Sbjct: 320 RFKNTDAKVDYVYRAENSPEFLILVQKELTTLINSDKESGTVVLF---NGDYPSGTGGMV 376

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
           + L     A  L       +    GGG+ +  Q 
Sbjct: 377 KIL--GPQAEVLQSELKSKIKNLKGGGKGNSFQG 408


>gi|259015955|gb|ACV89260.1| alanyl-tRNA synthetase [Muscidifurax raptorellus]
          Length = 133

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 10/135 (7%)

Query: 85  RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEA 136
            HHTFFEM+GN+SFG YFK+     AW+ LT++ +L   RLY+T +          DEE 
Sbjct: 1   YHHTFFEMMGNWSFGDYFKKEICGWAWEFLTEKLNLPADRLYVTYFGGDEKSNLKPDEEC 60

Query: 137 FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGER 196
            K W  + G+    ++  +  DNFW M ETGPCGP SE+ +D+           + +   
Sbjct: 61  KKFWLSL-GVPESHVLPGSMKDNFWEMGETGPCGPXSELHYDRIGG-REAAHLVNMDDPD 118

Query: 197 YIEIWNLVFMQFEQQ 211
            +EIWNLVF+Q+ + 
Sbjct: 119 VLEIWNLVFIQYNRD 133


>gi|71414521|ref|XP_809360.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70873729|gb|EAN87509.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 462

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 133/406 (32%), Gaps = 53/406 (13%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV   +  + E GGQ  D G  +     + + +VQ++ +   +         L     
Sbjct: 57  YNVVLTDSVLFPEGGGQPCDHGTIVYGNEEVPVRNVQRRGDTCVIS----TPCPLEAGEE 112

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D+  R     +HSA HLL   +       +      +T       +     I S 
Sbjct: 113 VEVRVDWPRRFDHMQHHSAQHLLSAVVEKAPQCRLPTVSWSLTHPYSFIVLPTGNKIDSD 172

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVR------------ 677
            +  +E   ND IA+ +PV   +   ++A        +      +  R            
Sbjct: 173 VVAHLEKVCNDAIARAVPVRCDMYPSKEAYEQALREKVEKEDSGEIFRQSRSIPSDVTGP 232

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +  +  EDG       C GTHVS+  ++ ++ ++ + +      ++  +TG R   +   
Sbjct: 233 IRIITVEDG--IDQCTCCGTHVSNLTQLQMIKLLHQETKGD-TLKLFFVTGDRLCRYYGD 289

Query: 738 QDEKLKSLASFL-KVSQGN-VVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              + K L   L  V     V   V+       + +  + L L   K + +  + +    
Sbjct: 290 MYFREKELMKELGGVRPEEFVAAAVKRGKEYADMEKRLKNLTLELMKAESEKLIAEAKAS 349

Query: 790 KIADVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                    + +   +V      ++ DA+++     + +L   S      V        L
Sbjct: 350 LAEGAGGGIVVYRRDDVGGDFFNALRDAIRQACPECLAVLAWGSP-----VATATAGGAL 404

Query: 848 DRFNAV--------DLARLSAKVLG---GGGGG-------GRPHMA 875
            R            D     A  +     G GG       G+ ++A
Sbjct: 405 GRAKTGQFMVIGPTDRVESLAPSVCIALEGKGGMSKYGYRGKGNLA 450


>gi|257469927|ref|ZP_05634019.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317064157|ref|ZP_07928642.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|313689833|gb|EFS26668.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
          Length = 374

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 154/402 (38%), Gaps = 43/402 (10%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E+   G  V++     PFY +  GGQLGD G   G+ I L++ D      G  +    V 
Sbjct: 9   EKIKEGYIVKLKDGNEPFYIDGKGGQLGDRGTI-GESIVLEVKD------GSILVDKEVA 61

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G          +I+ + R+ ++  H+A HL            ++  G  +  +    D+
Sbjct: 62  LG------EQECSINMERRKDIASQHTAQHLFSALAYN--DYQLNTMGFRMAEEYTTVDL 113

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS 680
             +  IT   +K +E+  N++I + + +    +N E+A+   G    +  K    VR V 
Sbjct: 114 DSNT-ITEETIKELENKANEVIRRAIELKIYTLNHEEAMKIEGLRKAIKDKVTGDVRFVE 172

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D G      C G HV +T +I L  I+S   I+    R   I G RA      + E
Sbjct: 173 IPDTDLG-----ACAGFHVENTKDIKLFKILSHEKIKGNYTRFFFIAGDRALKDYAFKHE 227

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVNFMS 798
             K L          ++  + +  +E +K++        + +  + +    +  ++N   
Sbjct: 228 LSKELCHIFSCKDHEILTMLNKSLDEKKKIETEMKMIASEFSELLGEKLMKEAEEINGYK 287

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            II   D    K+ +  L + I     +L+  S++  + +         ++ N  D  + 
Sbjct: 288 FIIYVGD----KTTVQYLPRHINPEEYLLITGSEDSYSII--------SNKINCKDFLKE 335

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKA--DQAIAGVASFLKK 898
                    GGG     Q  G    K   ++    + +FL K
Sbjct: 336 LTSASNNIKGGGN----QIKGNFKGKISKEELKKQLETFLNK 373


>gi|312879726|ref|ZP_07739526.1| Alanyl-tRNA synthetase, class IIc [Aminomonas paucivorans DSM
           12260]
 gi|310783017|gb|EFQ23415.1| Alanyl-tRNA synthetase, class IIc [Aminomonas paucivorans DSM
           12260]
          Length = 392

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 149/404 (36%), Gaps = 37/404 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           EA  G +V++V  + PF+   GGQ GD+G     G+R +I D + + EG  V    V  G
Sbjct: 10  EAGKGNRVKLVLGENPFHPAGGGQPGDSGWVEAPGLRCRILDCRME-EGAPVLLGEVLEG 68

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVT 622
                  +   +D +    L+  HS  H L  AL   + G  V +    +        + 
Sbjct: 69  TPVPGAEVEARVDEERHHLLARMHSGEHALSRALEKNVPGLRVFK--VNVDTKESLITLR 126

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA------IASGAAALLGTKYNDRV 676
               +T   L + E   N +I  +LPV TR+ +RE+A       A+      G +  + +
Sbjct: 127 WEGELTWEVLFAAEAEANGVIRADLPVTTRVFSREEARVDPDLKANWDRLEGGKEAPESL 186

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS------IRAGIRRIEAITGQR 730
           RVVS+     G +    C G+HV  TG+I  + I           +R  + R E      
Sbjct: 187 RVVSL-----GDYDKVACCGSHVERTGQIGGVLITGFKGTAPQWEVRYTVHRDE------ 235

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
               L      L+ L   +      +      + EE  + + +  + +  L +       
Sbjct: 236 ---LLEAWSRPLRRLVRQVGSPPEELEKVYGRLQEERSEARRLLDRLRPFLALP-FREEP 291

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
             + +F+  ++  +    +        ++    +++ +   + +++  L+     L    
Sbjct: 292 RGEASFLRLVLPGLPLDLITGPCKETIQEDPKRLVLALLPDEGERSPFLVCRGAGLTGDL 351

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGG--PNGNKADQAIAGV 892
                 +   ++     GGG P          +  K  +A+  V
Sbjct: 352 KG--WLKGHPELAA--RGGGSPDWISGVTQERDPEKWAKALKEV 391


>gi|294507136|ref|YP_003571194.1| Alanyl-tRNA synthetase [Salinibacter ruber M8]
 gi|294343464|emb|CBH24242.1| Alanyl-tRNA synthetase [Salinibacter ruber M8]
          Length = 240

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 91/231 (39%), Gaps = 14/231 (6%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                       +V D T FY E GGQ  D G    DG    + DVQK+   +  +    
Sbjct: 16  FTASVTDATDDYIVLDGTYFYPEGGGQPADHGTLHWDGGSAPVVDVQKEHGAVRHYIDDR 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E             ID   RR L   H+A H+L   +  + G+     G+ I  D  R D
Sbjct: 76  EGERPEQGDEATGQIDEARRRTLRRMHTAQHVLSKVVLDVFGAQT--AGNQIHTDRSRID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDR 675
                  +  ++  IE+  N  I Q+LPV  + M R  A        G   L+   + D 
Sbjct: 134 FE-PADFSEEDVAVIEERTNTAIEQDLPVEKKEMERARAEEHTPEGRGLLNLIPD-HVDP 191

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +R+V +     G      CGGTHV  T +I  + I + +S  A + RIE  
Sbjct: 192 LRMVQI-----GDLDLCPCGGTHVDRTRDIGRIRITNRTSKGAEVDRIEFK 237


>gi|169596416|ref|XP_001791632.1| hypothetical protein SNOG_00969 [Phaeosphaeria nodorum SN15]
 gi|160701306|gb|EAT92464.2| hypothetical protein SNOG_00969 [Phaeosphaeria nodorum SN15]
          Length = 440

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 148/402 (36%), Gaps = 27/402 (6%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIV 560
           E+  S +   V    +  + E GGQ  D G  I   +     I     +  G+   H   
Sbjct: 58  EQTGSSKTWLVELADSVLFPEGGGQPTDHGSIIPLNEDKADPIAITSIQRHGLQCIH--F 115

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     +  T+D+  R      H+  HLL   + ++    +  N   +   G    
Sbjct: 116 SPAPLAPGTKVKQTVDFTRRWDHMQQHTGQHLLSAVMDSLDLPTLGWN---MGAAGEMNY 172

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +   +  +  E++SI++  N++I  N+ +        +   S +  L   +    VR + 
Sbjct: 173 IELPRKPSDEEIRSIQNKCNELIRGNMSITVETP---EGKGSDSLPLDYDREKGVVRFIK 229

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G      C GTH+  T  I  + +   +S+R    R+    G RA +       
Sbjct: 230 I-----GDLDYNACCGTHLKQTSHIGAILLHHTASVRGTNCRLYFTAGDRAINMATESIN 284

Query: 741 KLKSLASFLKVS--QGNVVGRVEEIWE---EYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
            L+S+A  L  S    +V   V+ + +   E RK +        +   E +         
Sbjct: 285 GLRSIAVSLSTSAAPADVSSAVQRLGDQVSEARKREKRMLAEIAKFEGERIKKELGQIEC 344

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
            +S+  ++     +  V+  +++ ++  +++L     +   S++++   +L++   A  +
Sbjct: 345 VLSYRPTD-GLDFINLVIFEIKEAVKERVVVLCSGEVKTAGSLVVLGKPELVESM-AAKV 402

Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD-QAIAGVASFL 896
             + + V     GGG+    Q       K + +A+      +
Sbjct: 403 KNVVSSV----KGGGKGEKWQGKVTEWQKGEIEALKKAIEEV 440


>gi|198438284|ref|XP_002131660.1| PREDICTED: similar to Alanyl-tRNA synthetase domain-containing
           protein 1 [Ciona intestinalis]
          Length = 409

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 147/427 (34%), Gaps = 39/427 (9%)

Query: 483 DLTNGVSSIVKAIVQQGEIVEE---AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
            L    S +V     + ++  E    V  +  EV  + T  + E GGQ  D G       
Sbjct: 10  YLKQYESKVVACTKVECKVENEIGKLVKTKGYEVELEDTILFPEGGGQPDDRGTIND--- 66

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
            + +  V +K     +H    E   L    ++ + +D++ R      HS  HL+     T
Sbjct: 67  -VPVKRVTRKGSKA-LHFVTSE---LSVGDTVSMEVDWKRRFDHMQQHSGQHLITAIADT 121

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           + G   +      +   +  D   +  +T+ +L  IE   N  I + + V+  +      
Sbjct: 122 MFGFKTTSWDLGKSISFIELD---TPAVTADQLFQIECCANKSIREGVDVIVHVTQVGSP 178

Query: 660 IASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           I     A  L   +   VR+V ++  D     + +C GTHVS+   +  + ++S    + 
Sbjct: 179 ILQSVRARGLPDDHVGDVRIVEMKGID-----TNMCCGTHVSNLSHLQCIKLLSAEKGKK 233

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--IHAK 776
           G   +  +TG R   +        K L   LK      V  VE   ++ R  Q       
Sbjct: 234 GKTNLCFLTGDRILDYAGKCYANEKELTKQLKCGPEQHVEAVERSMKQLRVAQKNCTTLL 293

Query: 777 RKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
           R + +    +   K        +S    E +       M+ +  ++     + + +  EK
Sbjct: 294 RDVAVLEAAIFTKKFDAGSTKLLSMHRKEGNV----EFMNIISNEVSDQAFLFLTVGDEK 349

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGG---GGGGGRPHMAQSGGPNGNKADQAIAG 891
              + ++            +  +     L     G G  +    Q         ++A+A 
Sbjct: 350 GEGMFLISGP--------GNFIKECGTTLIETIVGKGQMKEFKMQGKAQKLQNREKALAV 401

Query: 892 VASFLKK 898
           V  ++ K
Sbjct: 402 VQEYINK 408


>gi|260943063|ref|XP_002615830.1| hypothetical protein CLUG_04712 [Clavispora lusitaniae ATCC 42720]
 gi|238851120|gb|EEQ40584.1| hypothetical protein CLUG_04712 [Clavispora lusitaniae ATCC 42720]
          Length = 442

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 164/420 (39%), Gaps = 40/420 (9%)

Query: 497 QQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIF 554
           ++ +  + A + +K+  V F  T  + E GGQ  DTG  I      +++  V ++     
Sbjct: 40  KEKQGKKNAQAKEKLYAVEFKDTVLFPEGGGQPSDTGAIILPNETAIEVQQVLRQGLKAV 99

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                V    +    ++ L +D+  R  +   H+  HL+     T     +S      + 
Sbjct: 100 H----VVPQPVEIGTNVTLKVDWDRRIDIMQQHTGQHLISAVFDTYDLETLSW-----SM 150

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
             +   +   K +    L+ +   VND+I Q +P+   +   ++       + +   Y+ 
Sbjct: 151 GDMINYIELPKKVDDDILEEVSQKVNDLILQAIPIT--VTTPDEHGGEIDTSHIPDDYDL 208

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              ++ +     G   +  C GTH++ST ++  +  + +++IR G  R+  + G R    
Sbjct: 209 SKGIIRIVK--IGDLDANPCCGTHLTSTSQVQGVSFLHQANIRGGHSRLHFVCGSRVSKL 266

Query: 735 LMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           L    + LK  + S L  S   V  +V ++   Y+K Q   +   L   +  +   ++ +
Sbjct: 267 LTSYHKILKDTSGSSLSCSIEEVSQKVSDLNMNYKKSQSRESS--LLKELAKIRADEVFN 324

Query: 794 V--NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV-----LIVVTEDL 846
           +  N  + + +E  S      +   QK++    + L+  +K+   ++     ++++  D 
Sbjct: 325 IFKNKTATLATEYRSDNSAEYLTLFQKEL----LTLINGNKDSGVNLTDSCTIVLINGDY 380

Query: 847 LDRF---------NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
                         A ++     K+L    GGG+    Q       K +  +  V  +L+
Sbjct: 381 KSGTGGMVKIMGPRAEEIQGELKKLLSNLKGGGKGASFQGKITRYEKGE--LESVLRYLE 438


>gi|328880599|emb|CCA53838.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 196

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 17/193 (8%)

Query: 2   SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
                I  TF+E+F++ GH  +  S+L+P     ++FT SGM P      G+  P+ + +
Sbjct: 1   MKTEQIVRTFVEYFEERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGRRL 60

Query: 62  TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121
             VQ+C+R      DLD VG    H T FEMLG +S G Y   R++   + LLT+ F +D
Sbjct: 61  VDVQRCLRT----TDLDEVG-DATHLTVFEMLGTWSLGDYEGPRSLDWGYGLLTEGFGID 115

Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175
              L+ TVY      + D+ + +LW+   G+     + +T  DN+WS   TGPCGP SEI
Sbjct: 116 PGLLHATVYSGDGRTERDDASLELWQD-RGVP----VELTLQDNWWSNGPTGPCGPDSEI 170

Query: 176 F-FDQGECIPGGL 187
           F +++G   P   
Sbjct: 171 FLWERGTPRPAPR 183


>gi|116754895|ref|YP_844013.1| threonyl/alanyl tRNA synthetase, SAD [Methanosaeta thermophila PT]
 gi|116666346|gb|ABK15373.1| Ala-tRNA(Pro) hydrolase [Methanosaeta thermophila PT]
          Length = 232

 Score =  154 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 11/217 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               V  D+T FY  +GGQ  D G  I      ++  V+    GI  H A      L   
Sbjct: 23  DDTGVYLDRTAFYPRSGGQPSDLGVLIRGDQVFRVEGVEPSEHGI-CHRAH----GLSPG 77

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   ID++ R ++  +H+A H+L   +    G+ ++  G+ I  D  R D +  +   
Sbjct: 78  DKVKGEIDWERRYRIMRSHTACHVLSAVIFRETGALIT--GNQIDTDRSRVDFSL-ESFD 134

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            + +++     ND+I +  PV  R+M R++A+       L     +R  V  +E E   +
Sbjct: 135 RSMIETYVRMANDLIKEGHPVRVRLMTRDEAMEIPDLVRLAKNVPERESVRVIEIEGVDL 194

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                CGGTHV +T EI  + +V   +     RR+  
Sbjct: 195 ---QACGGTHVRNTSEIGEIRLVKAENKGKSNRRVYF 228


>gi|217968140|ref|YP_002353646.1| Threonyl/alanyl tRNA synthetase SAD [Dictyoglomus turgidum DSM
           6724]
 gi|217337239|gb|ACK43032.1| Threonyl/alanyl tRNA synthetase SAD [Dictyoglomus turgidum DSM
           6724]
          Length = 383

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 142/345 (41%), Gaps = 35/345 (10%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
            G  + +  D+T FY E GGQ  D G  +G+  +L+++ V +K   I+    I      +
Sbjct: 26  EGDFLLLSLDETIFYPEGGGQPSDRGEIVGEAWKLEVSKVFEKDGVIWHKGKIFGENFPK 85

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L I+   RR+    H+A HLL   L       +   G  +  D  + ++ +   
Sbjct: 86  IGEIVDLFINIDLRREYMEQHTAQHLLSAILEK--DYSLETTGFQVFEDHTKIEIPYKGL 143

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
                +K +E  VN+ I +N+ +     +                  +  R+V +   D 
Sbjct: 144 DPEGFIKEVEGKVNEYIGRNISISIYWKD------------------ESTRIVEIPGLDV 185

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                  CGG HV S GE+ LL I+          R+E + G+R    L  ++++ K + 
Sbjct: 186 N-----PCGGLHVKSLGELKLLKILDFYKKNNLYWRVEFVAGRRIIKQLEKREKEYKIIK 240

Query: 747 SFLKVSQ-----GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
             L           ++ + + + ++ RKL+      +L+  +++    +  +  F++ ++
Sbjct: 241 EKLGNPNIVEGVDMLLSKADNLEKQIRKLKEELNSYRLEALLKE--TKEFKEYKFVARMM 298

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
            +++  +LK V   L  K +  ++ ++   + +       V +DL
Sbjct: 299 -DLEIGDLKYVAQGLFVKDK--VVGVLFNPQGQGFVFGRSVEKDL 340


>gi|225454668|ref|XP_002269399.1| PREDICTED: similar to ALATS (ALANYL-TRNA SYNTHETASE); ATP binding /
           alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and
           related compounds / nucleic acid binding [Vitis
           vinifera]
          Length = 532

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 169/479 (35%), Gaps = 104/479 (21%)

Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463
           +    GL  +D+  FN  ++E R R+R       +G    +                   
Sbjct: 1   MAEESGLR-VDVTGFNITMDEARERSRNAQKKGKAGGAIVMDAD---------------- 43

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523
             +   K                   S++KAI    E +E A +G +V ++ + T FY E
Sbjct: 44  ATATLHKMGVAATDDISKFTWFEDHESVIKAIYTGTEFLESAAAGDEVGIILETTSFYTE 103

Query: 524 AGGQ-----------------------------LGDTGCAIGDGIRLQITDVQKKAEGIF 554
            GGQ                             + DTG   G     Q+++VQ    G  
Sbjct: 104 KGGQFDPVESAPEVPKLDTLTVRLSSGSILMDLIFDTGSLEGSCGSFQVSNVQIY-GGFV 162

Query: 555 VHHAIV--ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +H   V  E G       ++  +DY  R+ ++ NH+ TH+L+ A+  +LG+HV Q GS +
Sbjct: 163 LHIGSVTGEIGRFSVGDKVICKVDYDRRKLIAPNHTYTHMLNFAMREVLGNHVDQKGSIV 222

Query: 613 TPDGLRFDVTHSKPI-TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            P+ LRFD +H   I  + E K+      + IA+ +  +T +   + A  +   A    +
Sbjct: 223 LPEKLRFDFSHGTHISNTREAKAFALLSEEGIAKGIRRITAVTT-DSAFKAMELAFSLEQ 281

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             D                         +S  E  LL    E  + +   R++A      
Sbjct: 282 EID------------------------AASEAEGSLL----EKKVASLRSRVDA------ 307

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE-----DL 786
                         A      + ++  ++  + ++ RK Q   A+  +Q  V+       
Sbjct: 308 --------------APIPAPKKADLRTKISLLQDQVRKEQKKIAEENIQKAVKVATEMAD 353

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                    F+S +   +D+  ++  +  + ++    +++        KA V   + E+
Sbjct: 354 GAASDGKAFFISLVDVGLDTTAVREAVLKVIERQGISVMVFSTDETTNKAVVYAGIPEN 412


>gi|294868394|ref|XP_002765516.1| Alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239865559|gb|EEQ98233.1| Alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 436

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 149/442 (33%), Gaps = 49/442 (11%)

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543
           L +  + ++       + V     G K  V  DQT  Y E GGQ  DTG         ++
Sbjct: 13  LRSATAKVLTCEAAPKKAVAPMAKGSKFVVTLDQTLLYPEGGGQPSDTGRI----GNAKV 68

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS----- 598
             V K +EG   H+   +   +     + +T+D+  R   +  HS  HL+          
Sbjct: 69  LYVNKNSEGEVHHYVDSK---VEVGSEVAVTLDWDRRWDNTQQHSGQHLISALCEHAEIF 125

Query: 599 ----TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
                            +       D+        + +K++E   N  I ++  V  R M
Sbjct: 126 PEFGKTDSWEFGNESCSVDIGPCNLDLIPQGETLESRVKALEKACNQAIREHRTVFNRQM 185

Query: 655 NREDAIASGA-------AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            R +             +AL      D  R+V ++  +        CGGTHV +  E+  
Sbjct: 186 KRSELEDENGNRDPMLRSALPKKVKGDVFRIVEIDGIE-----KNACGGTHVENLSELQC 240

Query: 708 LYIVSESSIRAG-IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           + I+  S   +  I     + GQR    L     +  ++ + L   +  +   V++  ++
Sbjct: 241 VKIIGHSLKASTQIVTFTFLIGQRVLDRLEECSNREAAMVNDLSCKREKLPELVQQRLQQ 300

Query: 767 Y--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
                 Q+     +L   +      K +  + +     + +S  L  +  AL +KI+   
Sbjct: 301 LTVANRQVKALTDELVQFLASDLLEKASGRSVVGA-FRDCESPFLHLLEKALSEKIKE-- 357

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAV-------DLARLSAKVLGGGGGGGRPHMAQS 877
                +    KA +L   T  LL             ++     +  G  G GG+  + Q 
Sbjct: 358 -----MEGTPKAILLCCPTAFLLSDCQEGYPLLANKEMLSSLLEEFGAKGAGGKKPVWQ- 411

Query: 878 GGPNGNKADQ-AIAGVASFLKK 898
            G +     +         +++
Sbjct: 412 -GKSITGIKERNFKKAMGIIEE 432


>gi|254474545|ref|ZP_05087931.1| alanyl-transfer RNA synthetase domain protein [Ruegeria sp. R11]
 gi|214028788|gb|EEB69623.1| alanyl-transfer RNA synthetase domain protein [Ruegeria sp. R11]
          Length = 239

 Score =  153 bits (386), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++  +V +Q+ FY   GGQ GDTG    DG  L I +  K   G  V     +  +    
Sbjct: 24  EEGGLVLNQSVFYPTGGGQPGDTGALSWDGGHLSIINTVKGEAGEIVLIPEPDAALPPVG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++  ++D+  R      H+A HLL   L       +  +G  I  +  R D    +   
Sbjct: 84  AAVSQSLDWDRRMGHMRIHTALHLLSVVLP------LPVSGGAIGAEKGRLDFNMPEA-- 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYE 684
             + +++ED +N +IA++L V  R +   +  A        ++   + + R+R+V +  +
Sbjct: 136 PEDKQALEDALNALIARDLEVTERWITDAELDAQPDLVKTMSVSPPRGSGRIRLVRIGTQ 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              +     CGGTHV+ TGEI  + +          RR+ 
Sbjct: 196 SDQID-LQPCGGTHVNRTGEIGAIRLGKVEKKGKQNRRVY 234


>gi|149914839|ref|ZP_01903369.1| Alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           AzwK-3b]
 gi|149811632|gb|EDM71467.1| Alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           AzwK-3b]
          Length = 239

 Score =  153 bits (386), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
             G++V     G    V+ D+T FY   GGQ GD+G    DG RL++    K      V 
Sbjct: 15  VGGQVVGHTPEG---GVILDRTIFYPTGGGQPGDSGTLEWDGGRLEVATTLKSEGDAIVL 71

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                  +      +  +++++ R      H+A HLL   +       +   G  IT   
Sbjct: 72  VPAEPEPLPPVGAHVQQSLNWRRRFGHMRVHTALHLLSVVIP------LPVTGGSITETK 125

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKY 672
            R D    + +   ++ +IE  +ND++A +LPV    + +ED  A+       ++   K 
Sbjct: 126 GRLDFDMPEAL--EDIAAIEAALNDLVAADLPVTEAWITQEDLAATPGLVKTLSVAPPKG 183

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             R+R+V +  +         CGGTHV+ST +I  L +          RR+ 
Sbjct: 184 AGRIRLVRIG-QGSDPVDLQPCGGTHVASTAQIGSLRLGKMEKKGRQNRRVY 234


>gi|119112306|ref|XP_311697.3| AGAP003413-PA [Anopheles gambiae str. PEST]
 gi|116129883|gb|EAA07381.3| AGAP003413-PA [Anopheles gambiae str. PEST]
          Length = 406

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 144/387 (37%), Gaps = 37/387 (9%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           ++V          V+F+ T  + E GGQ  D G     G R   + V+K +E I      
Sbjct: 17  KVVSCEKVAGGFNVIFEDTILFPEGGGQPTDHGTV---GGRAVKSVVRKGSEAIHFLEDD 73

Query: 560 VE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            +          +V  +D+  R      HS  HL+          +       +  +   
Sbjct: 74  GKGSQPFAAGEQVVQCVDWNRRFDHMQQHSGQHLITAIFDREFKYNTKSW--WLGTESSY 131

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYND 674
            D+  +K +T  +L+ +E   N +I    PV   +   +D         A   L    + 
Sbjct: 132 IDLE-AKDVTREQLERVESICNQLIVDCTPVRVDVYEPDDPALKSDVTRATRGLPEDVSG 190

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +RVV++     G+ S+ +C GTHV + G++  + ++S      G   +  + G R    
Sbjct: 191 PLRVVTI----AGIESN-MCCGTHVRNLGQLQSVKLLSVEK-AKGKCLVHFLVGGRVLRK 244

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKI 791
           L    ++   L + L     + +   +++    R  Q I  K   +L     E L+  + 
Sbjct: 245 LSECYDREVQLNTLLNGGPSSHIDLAKKLQSTVRATQRIAKKLTTELATTEAEKLNQQRD 304

Query: 792 ADV--NFMS-HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE--KKASVLIVVTEDL 846
           +     ++S H     DS  + + +  +  K+    I L     +   K  +++    D 
Sbjct: 305 SGSAPKYVSLHRGDGQDSDFINTFLRMV--KLPDCFIFLTNADTDGSGKGQLVLQGRPD- 361

Query: 847 LDRFNAVDLARLSAKV--LGGGGGGGR 871
                  D+A+L  ++  L  G G G+
Sbjct: 362 -------DVAKLGPEICTLLEGKGNGK 381


>gi|310801123|gb|EFQ36016.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 442

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 142/389 (36%), Gaps = 29/389 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           +   + F  +  + E GGQ  D G        G    + +  ++     V+H       L
Sbjct: 61  ETWLIEFADSVLFPEGGGQPSDHGTITPLSNPGATPILIEFVERVGLRCVYH---SPQPL 117

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++   +D+Q R      H+  HLL   ++T    +    G  +   G    V   +
Sbjct: 118 VPGETVRQEVDFQRRWDHMQQHTGQHLLSAVMNTYDDLNTLGWG--MGKSGAMNYVDLPR 175

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
             + AEL++I+   NDII  + P+       +DA        +   Y+    VV V    
Sbjct: 176 KPSEAELQAIQARCNDIIRSSAPITVE--TPDDAKTH----KMPEDYDQAKGVVRVI--R 227

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G      C GTH+S T  I L+ +     +     R+    G RA +        + ++
Sbjct: 228 IGEIDRNTCCGTHLSQTSHISLILVHHGEPVHGKNFRLYFSAGDRAINLAASSISAMGTI 287

Query: 746 ASFL--KVSQGNVVGRVEEIW---EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           +  L  K +   VV  V+ +     + +K +        +   E +        +   H 
Sbjct: 288 SKLLSSKNTADEVVQSVKAVQASAADLKKREKKLLSDIAEFEAEAVKARLQTSKSVWIHR 347

Query: 801 ISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
               ++  +K V  +++  +   G + +V   +EKK+  L+V    L ++ +   +    
Sbjct: 348 ADG-NADFVKWVAASIKDAVMACGGVAVVATGEEKKSGQLVV----LGEKSSVDAVVPKI 402

Query: 860 AKVLGGGGGGGRPHMAQS--GGPNGNKAD 886
             ++ G  GGG     Q   G  + +  +
Sbjct: 403 KDIVTGVKGGGAGDKWQGKVGAWDKDSLE 431


>gi|50426755|ref|XP_461975.1| DEHA2G09856p [Debaryomyces hansenii CBS767]
 gi|49657645|emb|CAG90445.1| DEHA2G09856p [Debaryomyces hansenii]
          Length = 448

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 113/276 (40%), Gaps = 15/276 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           +   V    T  + E GGQ  DTG  I  +  RL +  V +    +   H +     +  
Sbjct: 58  ELYAVELADTILFPEGGGQPFDTGSIILPNDNRLPVQMVLR--NQLTALHIV--PSPIDP 113

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D+  R  L   H+  HLL   L T     +S      + + +   +   + +
Sbjct: 114 GTKVTLQVDWDRRIDLMQQHTGQHLLSAVLDTYDLETLSW-----SLNEMINYIELPRKV 168

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           +   ++ I   VND I + LP+   ++  ++  A    + +   Y+    ++ +     G
Sbjct: 169 SDEIVEEINKKVNDYILEGLPIK--VVTPDEHGAEIDTSHIPDDYDTSKGIIRIVK--IG 224

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA- 746
              S  C GTH+SST +I  + ++ + ++R G  R+  I G R   +L+ Q   LK+++ 
Sbjct: 225 ELDSNPCCGTHLSSTSQIQAISLLHQVNVRGGNSRLHFICGSRVYKYLIKQHNILKAVSG 284

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             L      V  +V  +   Y+K     +    +L 
Sbjct: 285 GQLSCQIEEVAEKVGVLNLNYKKSTSRESNLLKELA 320


>gi|150020809|ref|YP_001306163.1| threonyl/alanyl tRNA synthetase, SAD [Thermosipho melanesiensis
           BI429]
 gi|149793330|gb|ABR30778.1| Threonyl/alanyl tRNA synthetase, SAD [Thermosipho melanesiensis
           BI429]
          Length = 363

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 121/270 (44%), Gaps = 19/270 (7%)

Query: 501 IVEEA-VSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            VE+    G +   +   +PFY +  GGQLGD G   G+   L++ +     +G   H  
Sbjct: 4   FVEKVEKEGDRYYAISSNSPFYVDYKGGQLGDRGYI-GNSRVLRVFE----KDGKIYHEI 58

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             E      E S  + ID ++R  +  +H+A H+L  AL  I  + ++  G  +  +   
Sbjct: 59  DRE----IEEGSYEIEIDEEHRNFVKAHHTAQHILSAALHEI--AEINTVGFRMGFEYTT 112

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     +    LK  E+  ND++ + + V   +++RED         L  K   +VR+
Sbjct: 113 VDLDVPF-VNDMVLKEAEELSNDVVKRCINVEEVLVDREDVGRFKLRKPLSEKVEGKVRI 171

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +     G    + CGG HV +TGEI ++ ++ +  I+  + R+  +    A  +    
Sbjct: 172 IKI-----GEFDYSPCGGFHVKNTGEIGVIKVLKQEKIKGNLTRLYFVASSLALKYFWKY 226

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
           +  L++++  L  S   +  +V +  +E +
Sbjct: 227 NNILRNISKTLTSSISEIEEKVSKTLDELK 256


>gi|319791439|ref|YP_004153079.1| alanyL-tRNA synthetase, class iic-like protein [Variovorax
           paradoxus EPS]
 gi|315593902|gb|ADU34968.1| Alanyl-tRNA synthetase, class IIc-like protein [Variovorax
           paradoxus EPS]
          Length = 252

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 26/238 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK------KAEGIFVHHAIVE 561
            +  +V D+T FY   GGQ GD G   + DG  + I D +K      +    FVH    +
Sbjct: 23  DEAGIVLDRTVFYPLGGGQAGDAGVLALADGREVAIADTRKAKNEEGQPTNEFVHVPAPD 82

Query: 562 RGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           +  L    +   ++   +D++ R +L   H+A+HLL H +       V  NG  ITPD  
Sbjct: 83  QAELLAALKPGDTVTARLDWERRHRLMRFHTASHLLCHLVP------VPVNGCSITPDYA 136

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYN 673
           R D   + P+    L +    +  ++    P+    ++ E+  A+ A     ++   +  
Sbjct: 137 RIDFHMTDPLDKEALTA---GLARLVEAAHPLTVGAISDEELDANPALVKSMSVQPPRGT 193

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             VR + +  E         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 194 GTVRTIRIGGEGETQIDFQPCGGTHVANTAEIGTVVVTKIEKKSANSRRV--VLGWAA 249


>gi|325284894|ref|YP_004264356.1| phosphoesterase DHHA1 [Deinococcus proteolyticus MRP]
 gi|324316609|gb|ADY27721.1| phosphoesterase DHHA1 [Deinococcus proteolyticus MRP]
          Length = 411

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 122/326 (37%), Gaps = 22/326 (6%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVE 561
            + V+  K EV  D + FY + GGQ GD G         ++T  +  KA G   H   VE
Sbjct: 26  AQVVAAAKGEVALDASAFYPQGGGQNGDCGWLRAGEQSWKVTGTRLDKASGAVWH--AVE 83

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             +      L   +D  +R +    H+  HLL  A + +  +      + +   G    +
Sbjct: 84  GELPPVGTQLDGEVDAYSRLRQMARHTGEHLLAQAFARVNPA---FEVAAVGMRGPDCTL 140

Query: 622 THSKPITSAELKSIEDNVNDI-IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
                 + A+ ++ E  + ++ +A  L + T+++   +  A        T     VR+V 
Sbjct: 141 DLRGDPSEADAQAAEALLREVMVAGPLRLDTQLVPHTELRAYPLRR--ATPLTGDVRLVM 198

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
                G +   + C GTH+        + ++    I+AG+ R+    G  A  +L G   
Sbjct: 199 FRDAAGDLFDVSACAGTHLPLGNLAAPVTVLGLERIKAGLTRVTFRAGPEAAEYLGGVYR 258

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVN-- 795
             ++LA         +  RVE +  E  +L       +  L    V+         V   
Sbjct: 259 DTRALAQSFSTGPAGLAERVEALRSERDRLAAEAQALRTALAGALVDAAPAETAGSVTLR 318

Query: 796 --------FMSHIISEVDSKELKSVM 813
                    ++ ++  V + E+++ +
Sbjct: 319 LLSLPEEGLLAPVLGSVPAGEVRAAV 344


>gi|311896687|dbj|BAJ29095.1| hypothetical protein KSE_32860 [Kitasatospora setae KM-6054]
          Length = 412

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 11/205 (5%)

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             L  +E  +N+++ + L V   +M  + A   GA A+ G K+ D VRVV++     G  
Sbjct: 78  DVLADVEQKINEVLVRELDVTAEVMTMDQAREQGAIAMFGEKHGDSVRVVTI-----GDF 132

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S  L GGTHV +T ++ L+ ++ ESSI +G+RR+EA+ G  A   L  +   +  L   +
Sbjct: 133 SKELGGGTHVGNTAQLGLVKLLGESSIGSGVRRVEALVGADAYRFLAREHTVVAQLTELV 192

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-----NVEDLSCHKIADVNFMSHII-SE 803
           K     +  ++  +    +  +    + + +               +  V  ++  +   
Sbjct: 193 KGRPEELPEKISGMLGRLKDAEKEIERFRAEKVLAAAAGLAQGAEDVRGVALVAARVGDG 252

Query: 804 VDSKELKSVMDALQKKIQSGIIMLV 828
             + EL+ ++  ++ ++ +   +  
Sbjct: 253 TGADELRKLVLDVRARLGNRPAVAA 277


>gi|310778595|ref|YP_003966928.1| Threonyl/alanyl tRNA synthetase SAD [Ilyobacter polytropus DSM
           2926]
 gi|309747918|gb|ADO82580.1| Threonyl/alanyl tRNA synthetase SAD [Ilyobacter polytropus DSM
           2926]
          Length = 372

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 131/316 (41%), Gaps = 28/316 (8%)

Query: 509 QKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
              ++  + +P Y +  GGQLGD G          I  V+K          I+  G ++ 
Sbjct: 14  NGYKITLEDSPLYQDGKGGQLGDRGSIANKN----ILSVEKNY--------ILVDGEVQL 61

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             +  L IDY  R+ + + H+A HL            ++  G  +  +    D+  SK +
Sbjct: 62  GEN-DLFIDYDRRKDIEVQHTAQHLFSAIAYNEY--SLNTVGFRMAEEYSTVDLD-SKDL 117

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDG 686
           T   +K IE  VN+ I  ++PV T I+ RE+ +   G    +  K    VR+V +     
Sbjct: 118 TEENIKGIEKMVNNAIKSSIPVETSIVKREEVMTLEGMRKTVSEKVTGDVRIVKI----- 172

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G   +  CGG HV++  E+ +  I+S   I+    R   I G RA     G+++ +  L 
Sbjct: 173 GDLDTNACGGFHVNNICELQIFKILSWEKIKGNYTRFYYIAGNRAIEDYYGKNKLIGKLC 232

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIH---AKRKLQLNVEDLS--CHKIADVNFMSHII 801
             L   +  ++  ++++  + +  +L      +   ++  +DL      I     + +  
Sbjct: 233 QTLSCRENEIITMIDKMVSDKKSSELELRSITQNYAKILAKDLMNNSENINGKKLIFYPE 292

Query: 802 SEVDSKELKSVMDALQ 817
           + + S  L   +D  +
Sbjct: 293 NSLVSNFLPKYIDISK 308


>gi|253584156|ref|ZP_04861354.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834728|gb|EES63291.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 374

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 149/402 (37%), Gaps = 43/402 (10%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           E+   G  +++     PFY +  GGQLGD G   G+   L++ D      G  +    V 
Sbjct: 9   EKIKEGYIIKLNDGNGPFYIDGKGGQLGDRGTL-GESNVLEVKD------GSIITDKEVP 61

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            G          TID + R+ ++  H+A HL            ++  G  +  +    D+
Sbjct: 62  LG------EQEYTIDMERRKDIACQHTAQHLFSALAYN--DYQLNTVGFRMAEEYTTVDL 113

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS 680
             +  I+   +  +E+  N+II + + +    +N E+A+   G    +  K    VR V 
Sbjct: 114 DSNT-ISEETITELENKANEIIRKAIELKIYTLNHEEALKIEGLRKAIKDKVTGDVRFVE 172

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   D G      C G HV +T +I L  I+S   I+    R   I G RA      + E
Sbjct: 173 IPEIDLG-----ACAGFHVENTKDIKLFKILSHEKIKGNYTRFFFIAGDRAIKDYAFKHE 227

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMS 798
             K L          ++  + +  EE +K +        +    + +    +  ++N   
Sbjct: 228 LSKELCHIFSCKDYEILTMLNKSLEEKKKTETEMKMIASEFAELLGEKLMREAEEINGYK 287

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            +I   D    K  +  L + I     +L+  S++  + +         ++ N  +  + 
Sbjct: 288 FVIYTGD----KMTVQYLPRYIAPEDYILITGSEDSYSII--------SNKINCKEFLKE 335

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKA--DQAIAGVASFLKK 898
                    GGG     Q  G    K   ++    + +FL K
Sbjct: 336 LTSFNTNIKGGGN----QIKGNFKGKISKEELKKQLETFLNK 373


>gi|255728569|ref|XP_002549210.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240133526|gb|EER33082.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 439

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 134/395 (33%), Gaps = 23/395 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           +  V F  T  + E GGQ  D G      +   +++  V +           +   ++  
Sbjct: 55  EFGVEFQDTILFPEGGGQPYDKGTITILPENKVIEVKSVLRDKLKAVH----LVDEMIEP 110

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D+  R  +   H+  HLL        G            +     +   + I
Sbjct: 111 GTEVTLNVDWARRIDIMQQHTGQHLLSAVF-DTFGLETLSWSMGEEINY----IELPEKI 165

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
               L  +++ VN +I + + +   ++  +        + L   Y+    ++ +     G
Sbjct: 166 NDELLGEVQERVNQLIVEGIKIT--VVTPDQHGHEVDVSHLPDDYDLSKGIIRIVK--IG 221

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
              +  C GTH++ST +I  + ++ ++ IR G  R+    G R  + L  + E L+++A+
Sbjct: 222 ELDANPCCGTHLTSTSQIQSIALLHQAPIRGGHSRLFFTCGARVANVLRKEHEILRNVAT 281

Query: 748 -FLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
             L  +   V  +VE +    RK    +    ++L             D   ++++    
Sbjct: 282 NQLSCAIEAVGEKVELLNLNTRKSNSTINALLKELAGLEASKIYQNFKDGKKVAYVYRTD 341

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN---AVDLARLSAK 861
               L +V   L   I      +     +    +    +     +     A  +      
Sbjct: 342 LPDYLTAVNKELLNLINGDDSSVDLSKNQTLVLLHGAPSNGGSIKITGPEASSIQTELKS 401

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
            L    GGG+    Q       K +  +  V  +L
Sbjct: 402 KLTNLKGGGKGTSFQGKITKFEKGE--LESVLKYL 434


>gi|68479127|ref|XP_716369.1| hypothetical protein CaO19.12703 [Candida albicans SC5314]
 gi|68479258|ref|XP_716308.1| hypothetical protein CaO19.5239 [Candida albicans SC5314]
 gi|46437974|gb|EAK97312.1| hypothetical protein CaO19.5239 [Candida albicans SC5314]
 gi|46438036|gb|EAK97373.1| hypothetical protein CaO19.12703 [Candida albicans SC5314]
          Length = 471

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 149/420 (35%), Gaps = 46/420 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           ++  V  + T  + E GGQ  D G       +   +++  V +           +   ++
Sbjct: 62  KEFGVELEDTILFPEGGGQPYDKGTITLLPDNTKIIEVKSVLRDKLKAIH----LVDELI 117

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L +D+  R  +   H+  HLL                   T D +   +   +
Sbjct: 118 EPGTQVRLNVDWGRRLDIMQQHTGQHLLSAVF-DTYKLETLSWSMGETKDDI-NYIELPR 175

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-------------ASGAAALLGTKY 672
            I +  +  +++ VN +I  ++P+     ++                 A    + +   Y
Sbjct: 176 KIDNDLVVEVQNKVNQLIVDSIPITVVTSDQHGHGHGQEHEHEHEHEHADVDISHIPDDY 235

Query: 673 ----NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                  +R+V +   D        C GTH++ST +I  + ++ +S IR G  R+  I G
Sbjct: 236 DLSQGGIIRIVKIGELDAN-----PCCGTHLTSTAQIQSIALLHQSPIRGGHSRLYFICG 290

Query: 729 QRARSHLMGQDEKLKSLAS-FLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQ 780
            R  +HL  + E LK++++  L  S   V  ++E +   Y+K       L    A  +  
Sbjct: 291 GRVANHLRKEHEILKNVSTNQLSCSIDAVEEKIELLSLNYKKTNSTLNNLLKELASIEAN 350

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
              ++   H   +        +++  + L SV   L   I       V IS ++   +L 
Sbjct: 351 KIFQNFKTHDNNNSKLAYVYRADL-PEYLTSVQKELTTLINQDKTGDVDISNKQTLVLLS 409

Query: 841 VVTED----LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +     +    A +L +     L    GGG+    Q       K +  +  V  +L
Sbjct: 410 GAAPNGGTIKILGPKAEELQKELKSKLSNLKGGGKGSSFQGKITKFEKGE--LEAVLKYL 467


>gi|56752605|gb|AAW24516.1| SJCHGC03396 protein [Schistosoma japonicum]
          Length = 122

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 70/112 (62%), Gaps = 5/112 (4%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
               +R  F +FF   GH  + SSS IP NDP+L+F N+GM  +K IF G   P      
Sbjct: 6   TARELRQQFFDFFNSRGHVYVHSSSTIPHNDPSLLFANAGMNQYKPIFQGTADPNSELGQ 65

Query: 59  -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQL 109
            +     QKC+RAGGKHNDLD+VGR   HHTFFEMLGN+SFG YFK++ +  
Sbjct: 66  LKRAYNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKKHVDW 117


>gi|328770064|gb|EGF80106.1| hypothetical protein BATDEDRAFT_36953 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 328

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 89/273 (32%), Gaps = 19/273 (6%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EVV   T  +   GGQ  D G   G    + I D ++           +    +  +  
Sbjct: 53  FEVVLADTVIFPTGGGQPNDLGKING----IPIVDARRVGLDCVH----ILNNPVEKDQV 104

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D+  R      HSA HLL                   +       +  +      
Sbjct: 105 VQVDLDWDRRFDHMQQHSAQHLLSAIAQKEFDMKTVGW----SLGKAVCYIEVTAEPKQH 160

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L ++E  VN  I + + V     +  +         +  K    +    V         
Sbjct: 161 VLDALEQQVNAYIRKRIAVSVVEHDMNEHD-------MPKKLPSDLDGAVVRCITFDGLD 213

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +  C GTHV ++ +I    ++    +R G  R+  + G R          + + L   L 
Sbjct: 214 NNTCCGTHVENSADIQCCKLLHTERVRGGNTRVFFVAGNRVFQSYQSTFLRNRKLTDLLS 273

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
               N V RVE + +  ++L   + K+  ++  
Sbjct: 274 TGPENFVERVEGLKKNIKELIKTNKKQSKEIAA 306


>gi|330947236|gb|EGH47963.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 146

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/115 (47%), Positives = 77/115 (66%), Gaps = 1/115 (0%)

Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352
           +NEGRGYVLRRI+RRA  +   LG        ++ AL  EMGSA+PEL+Q +  IE  L+
Sbjct: 1   SNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLK 60

Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            E+E+F KTL++GL +L+  L+ L K  ++ G+V FKLYDT+G P+D+  DI   
Sbjct: 61  GEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARE 114


>gi|238878383|gb|EEQ42021.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 471

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 149/420 (35%), Gaps = 46/420 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           ++  V  + T  + E GGQ  D G       +   +++  V +           +   ++
Sbjct: 62  KEFGVELEDTILFPEGGGQPYDKGTITLLPDNTKIIEVKSVLRDKLKAIH----LVDELI 117

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L +D+  R  +   H+  HLL                   T D +   +   +
Sbjct: 118 EPGTQVRLNVDWGRRLDIMQQHTGQHLLSAVF-DTYKLETLSWSMGETKDDI-NYIELPR 175

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-------------ASGAAALLGTKY 672
            I +  +  +++ VN +I  ++P+     ++                 A    + +   Y
Sbjct: 176 KIDNDLVVEVQNKVNQLIVDSIPITVVTSDQHGHGQEHEHEHEHEHEHADIDISHIPDDY 235

Query: 673 ----NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                  +R+V +   D        C GTH++ST +I  + ++ +S IR G  R+  I G
Sbjct: 236 DLSQGGIIRIVKIGELDAN-----PCCGTHLTSTAQIQSIALLHQSPIRGGHSRLHFICG 290

Query: 729 QRARSHLMGQDEKLKSLAS-FLKVSQGNVVGRVEEIWEEYRK-------LQLIHAKRKLQ 780
            R  +HL  + E LK++++  L  S   V  ++E +   Y+K       L    A  +  
Sbjct: 291 GRVANHLRKEHEILKNVSTNQLSCSIDAVEEKIELLSLNYKKTNSTLNNLLKELASIEAN 350

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
              ++   H   +        +++  + L SV   L   I       V IS ++   +L 
Sbjct: 351 KIFQNFKTHDNNNSKLAYVYRADL-PEYLTSVQKELTTLINQDKTGDVDISNKQTLVLLS 409

Query: 841 VVTED----LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
               +     +    A +L +     L    GGG+    Q       K +  +  V  +L
Sbjct: 410 GAAPNGGTIKILGPKAEELQKELKSKLSNLKGGGKGSSFQGKITKFEKGE--LEAVLKYL 467


>gi|189202146|ref|XP_001937409.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984508|gb|EDU49996.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 584

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 150/405 (37%), Gaps = 36/405 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIV 560
           +A   +   +    +  + E GGQ  D G       D  + +I     +  G+   H   
Sbjct: 200 DATGSKTYLIELADSVLFPEGGGQHTDHGVLTTLKHDESKEEIPIRSIQRHGLRCIH--F 257

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L   M +  T+D+  R  L   H+  HLL   +    G  +   G  +   G    
Sbjct: 258 SPTPLPPGMPVRQTVDFARRWDLMQQHTGQHLLSAIM---DGMDLPTLGWSMGQPGEMNY 314

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V   +  T  E++ I+ + N  I +++P+       E     G+ +L    Y+    VV 
Sbjct: 315 VELPRKPTDDEIQKIQKDCNAKIGESMPITV-----ETPEGKGSDSL-PDDYDKEKGVVR 368

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
             +   G      C GTH+ ++  I ++ +    S+R    R+    G RA         
Sbjct: 369 --FIKIGDMDYNACCGTHLQNSAHISVILLHHTQSVRGTNCRLFFTAGDRAIRMATEAIN 426

Query: 741 KLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------ 792
            L+++A  L  S    +V   V+ + ++    +    ++KL   +      +I       
Sbjct: 427 GLRTIAVSLSSSSAPTDVAAGVQRMSDQVS--ESRKKEKKLLAEIASFEGERIKTQLQSQ 484

Query: 793 DVNFMSHIISEVDSKELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           +V F       +D   +  V   ++   K + G+++L     +   SVL+    +L+++ 
Sbjct: 485 EVAFSHRTTDGLD--FINMVFFEVKDTVKERDGVVVLCSGEVKTSGSVLVFGMPELVEKM 542

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD-QAIAGVAS 894
            A        +V+    GGG+    Q       K + +A+  V +
Sbjct: 543 TA-----KVKEVVSTAKGGGKGEKWQGKVTEWQKGEIEALRDVVN 582


>gi|10639269|emb|CAC11271.1| alanyl-tRNA synthetase related protein [Thermoplasma acidophilum]
          Length = 245

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   E VS     +V D+T FY   GGQ  DTG  + D    ++ DVQK  + +     
Sbjct: 17  KEFQAEVVSVDSNGIVLDRTAFYPTGGGQPNDTGIIVNDDKTYRVVDVQKHGDDVVHILE 76

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V+   L+    +   ID++ R      H+A H+L   +S    S     G  I  D  R
Sbjct: 77  SVDG--LKAGDRIYGKIDWERRYAHMRYHTAIHILDGIVSAKHNSEALLTGGQIYEDRSR 134

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG--AAALLGTKYNDRV 676
            D+   +  T   +  I    N+ I++   V    ++RE+A+     A    G K  + +
Sbjct: 135 IDMNI-ENFTKEFVDQIIQEANEFISEGHRVYAENISREEAMKRPNLARTEPGRKLIESL 193

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            VV +   +G        GGTHV++T E+  + +    +     +RIE 
Sbjct: 194 PVVRIIVIEG--LDEQSDGGTHVANTREVGKIVLRKIENKGRKNKRIEF 240


>gi|322371755|ref|ZP_08046298.1| Alanyl-tRNA synthetase, class IIc-like protein [Haladaptatus
           paucihalophilus DX253]
 gi|320548640|gb|EFW90311.1| Alanyl-tRNA synthetase, class IIc-like protein [Haladaptatus
           paucihalophilus DX253]
          Length = 240

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 91/234 (38%), Gaps = 18/234 (7%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E            VV D+T FY E GGQ  DTG    +     +TDVQKK        
Sbjct: 18  EREFEATVERVTSNRVVLDRTLFYPEGGGQPFDTGVLESEDETWAVTDVQKKDTIYHTLD 77

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +         ++   ID++ R      H+A HLL   L     +  +  G+ +  D  
Sbjct: 78  GTLPE----EGTTVTGRIDWERRYAHMRYHTAQHLLSAVLLEEYDAQTT--GNQLYEDRA 131

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKY 672
           R D  + +  T  E   IE  +ND I   L V    M+R++A A          LL    
Sbjct: 132 RIDCGY-ERFTDEEFARIESVMNDRIDAGLAVNWYEMDRDEAEASLDPERTRIHLLPESI 190

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             R+R+V +E  D        C GTHV  T E+    I    +  +   R++ +
Sbjct: 191 R-RIRIVEIEGTD-----RTACAGTHVERTDELGAFRITGRETKGSDEERLKFV 238


>gi|18543305|ref|NP_570062.1| CG10802 [Drosophila melanogaster]
 gi|17862184|gb|AAL39569.1| LD13611p [Drosophila melanogaster]
 gi|22831622|gb|AAF45874.2| CG10802 [Drosophila melanogaster]
 gi|220943032|gb|ACL84059.1| CG10802-PA [synthetic construct]
          Length = 436

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 146/393 (37%), Gaps = 42/393 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  
Sbjct: 41  FNVICEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GSTAVHFVESPTSFEQDAE 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPIT 628
           ++LT+DYQ R      HS  HL+            +    GS ++       ++    I+
Sbjct: 95  VLLTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSTVS----YIQLSTPHLIS 150

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYED 685
              L  IE   ND+I +   V   +++ E A     + A   L   +    RVV +E  +
Sbjct: 151 RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIE 210

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S +C GTHV++  ++  + ++    ++A +  +  + G+R    L    ++ + L
Sbjct: 211 -----SNMCCGTHVTNLSQLQCIKLLYAEKVKANVL-VHFVVGERVLVKLGEVFQREQQL 264

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
              LK   G  +  V+++ +  +  +       KR      E L     K     F  H 
Sbjct: 265 TQALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKRYATAEAERLCDLPKKDRPKYFSLHR 324

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISK------EKKASVLIVVTEDLLDRFNAVD 854
              ++   + + + A       GI   + +S+        K  +++    +++       
Sbjct: 325 RDGIEVDFINTFLRA----APEGIFYFLTVSESVFAGSSAKGHLVLRGDPEIV-----GK 375

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           L     ++L  G G G+    Q    N  +  +
Sbjct: 376 LGPQFMEILE-GKGNGKEDNFQGKINNLARLQE 407


>gi|16082487|ref|NP_393602.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Thermoplasma acidophilum DSM 1728]
          Length = 241

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   E VS     +V D+T FY   GGQ  DTG  + D    ++ DVQK  + +     
Sbjct: 13  KEFQAEVVSVDSNGIVLDRTAFYPTGGGQPNDTGIIVNDDKTYRVVDVQKHGDDVVHILE 72

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            V+   L+    +   ID++ R      H+A H+L   +S    S     G  I  D  R
Sbjct: 73  SVDG--LKAGDRIYGKIDWERRYAHMRYHTAIHILDGIVSAKHNSEALLTGGQIYEDRSR 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG--AAALLGTKYNDRV 676
            D+   +  T   +  I    N+ I++   V    ++RE+A+     A    G K  + +
Sbjct: 131 IDMNI-ENFTKEFVDQIIQEANEFISEGHRVYAENISREEAMKRPNLARTEPGRKLIESL 189

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            VV +   +G        GGTHV++T E+  + +    +     +RIE 
Sbjct: 190 PVVRIIVIEG--LDEQSDGGTHVANTREVGKIVLRKIENKGRKNKRIEF 236


>gi|195163547|ref|XP_002022611.1| GL13126 [Drosophila persimilis]
 gi|194104603|gb|EDW26646.1| GL13126 [Drosophila persimilis]
          Length = 434

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 144/415 (34%), Gaps = 43/415 (10%)

Query: 502 VEEAVSGQ-----KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           V+ A  G+        VV + T  + E GGQ  D G   G      +  V +K  G    
Sbjct: 31  VDVATGGEARPVRGFNVVCEDTILFPEGGGQPCDYGTINGQ----PVRRVLRK--GNIAV 84

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H +           +  ++D+  R      HS  HL+            +          
Sbjct: 85  HFVESSSSFEEGAEVHQSLDWDRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSNVSH 144

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKYN 673
           ++ +  H   I+   L  IE   N++I +  PV   +++    E+   + A   L   + 
Sbjct: 145 IQLNTPHL--ISRESLDLIERQANELIREGRPVSVVLVDPEVDEEFKDARAPRGLPKDHE 202

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              RVV +E  +     S +C GTHV+   ++  + ++    ++  I  +  + G+R   
Sbjct: 203 GLARVVRIEGIE-----SNMCCGTHVTDLSQLQCIKLLYAEKVKTNIL-VHFVVGERVLR 256

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKRKLQLNVEDLSC 788
            L    ++ + L + LK      +  V+++ +  +      LQL+      +    +   
Sbjct: 257 KLGEVFQREQQLTTALKGGAQQHLELVQKLQQNVKGTRKSFLQLLKDFASAEAERLEDLS 316

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS------VLIVV 842
                  F  H    ++   + + +    +    GI   + +S+   A       +++  
Sbjct: 317 KAERPKYFSLHRRDGIEVDFIHTFL----RHAPEGIFYFLTVSEGGAAGSSGKGHLVLRG 372

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              +++      L       L  G G G+    Q    N  K  + I  + S  K
Sbjct: 373 DPAVVEEIGPKFL------ELLEGKGNGKAGSFQGKINNLAKLPECIELLESHFK 421


>gi|242012761|ref|XP_002427096.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
 gi|212511354|gb|EEB14358.1| alanyl-tRNA synthetase, putative [Pediculus humanus corporis]
          Length = 361

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 128/343 (37%), Gaps = 19/343 (5%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
            EV+ + +  + E GGQ  DTG        + ++ V +K +   ++        +     
Sbjct: 32  YEVICEDSILFPEGGGQPWDTGFVND----IPVSQVLRKGDSAVIYL----PKPVTVGGE 83

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +   I+++ R      HS  HL+   ++       +          +  D   +K +T+ 
Sbjct: 84  VKQVINWERRFDHMQQHSGQHLITAIINEEYKIDTTSWWLGEELSHIELD---TKQLTNE 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVH 689
           ++ +IE+  N  I + +PV  ++  +       A    L       +R+V +   +    
Sbjct: 141 QITNIENLANQKIIEQIPVTVKLYEKNSKEVENARTRGLPDDVTGPIRIVEIVGLE---- 196

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            S LC GTHV++ G++  + ++     +     +  ++G R   +L    E  + L   L
Sbjct: 197 -SDLCCGTHVNNLGQLQSIKLLYAEKGKKNKTNLFFLSGTRVLKYLSKCLETEQKLTKLL 255

Query: 750 KVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807
           K    +    + ++ +  +    +L +  ++  +   +   +      + +H  ++ +S 
Sbjct: 256 KCDPSSYADIISKLQQNLKLTNKKLDNLFKEKAVEEAEKLKYLKPKPKYYTHYKNDANSD 315

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            +      L+          +  + E    +LI   ED +   
Sbjct: 316 YVDCFWRTLRDNELLNETFFMLAAGETNGYLLINGNEDDIKTL 358


>gi|126735839|ref|ZP_01751584.1| hypothetical protein RCCS2_18226 [Roseobacter sp. CCS2]
 gi|126715026|gb|EBA11892.1| hypothetical protein RCCS2_18226 [Roseobacter sp. CCS2]
          Length = 238

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D T FY  +GGQ GD+G     G  + I    K      V       G+     
Sbjct: 25  EGGIVLDGTIFYPTSGGQPGDSGTLRWKGREIDIATTVKGEGDAVVLVPAEPAGMPTIGQ 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +++  R +    H+A HLL   +       +  +G  I  +  R D    +    
Sbjct: 85  DVTQVLNWDRRYRHMRVHTALHLLSVVIP------LPVSGGSIGAEKGRLDFDMPEA--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
            +  ++ED++N +IA N+ V    ++ E+  A        ++   +   R+R+V +   D
Sbjct: 137 EDKTALEDDINRLIACNMHVTEEWISDEELDAQPDLVKTMSVQPPRGTGRIRLVRIGVGD 196

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV++T EI  + I          RR+ 
Sbjct: 197 -ETADLQPCGGTHVANTEEIGRVRIGKIEKKGRQNRRVY 234


>gi|294873445|ref|XP_002766631.1| alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239867663|gb|EEQ99348.1| alanyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 403

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 141/420 (33%), Gaps = 49/420 (11%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G K  V  DQT  Y E GGQ  DTG         ++  V K +EG   H+   +   +
Sbjct: 2   AKGSKFVVTLDQTLLYPEGGGQPSDTGRI----GNAKVLYVNKNSEGEVYHYVDSK---V 54

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALS---------TILGSHVSQNGSCITPDG 616
                + +T+D+  R   +  HS  HL+                           +    
Sbjct: 55  EVGSEVAVTLDWDRRWDNTQQHSGQHLISALCEHAEIFPEFGKTDSWEFGNESCSVDIGP 114

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-------AALLG 669
              D+        + +K++E   N  I ++  V  R M R +             +AL  
Sbjct: 115 CNLDLIPQGETLESRVKALEKACNQAIREHRTVFNRQMKRSELEDENGNRDPMLRSALPK 174

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG-IRRIEAITG 728
               D  R+V ++  +        CGGTHV +  E+  + I+  S   +  I     + G
Sbjct: 175 KVKGDVFRIVEIDGIE-----KNACGGTHVENLSELQCVKIIGHSLKASTQIVTFTFLIG 229

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKRKLQLNVEDL 786
           QR    L     +  ++ + L   +  +   V++  ++      Q+     +L   +   
Sbjct: 230 QRVLDRLEECSNREAAMVNDLSCKREKLPELVQQRLQQLTVANRQVKALTDELVQFLASD 289

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
              K +    +     + +S  L  +  AL +KI+        +    KA +L   T  L
Sbjct: 290 LLEKASGRPVVGA-FRDCESPFLHLLEKALSEKIKE-------MEGAPKAILLCCPTAFL 341

Query: 847 LDRFNAV-------DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ-AIAGVASFLKK 898
           L             ++     +  G  G GG+  + Q  G +     +         +++
Sbjct: 342 LSDCQEGYPLLANKEMLSSLLEEFGAKGAGGKKPVWQ--GKSMTGIKERNFKKAVGIIEE 399


>gi|77462699|ref|YP_352203.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides 2.4.1]
 gi|77387117|gb|ABA78302.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides 2.4.1]
          Length = 239

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 13/218 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FYA  GGQ GD+G    DG R+ +    K   G           +     
Sbjct: 25  EGGILVDRSIFYATGGGQPGDSGFLDWDGGRIDVATAVKADGGRIALVPAEAGPLPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+  T+D++ R +    H+A HLL   +       +   G  I  +  R D    +P   
Sbjct: 85  SVRQTLDWERRHRHMRVHTALHLLSVVIP------LPVTGGQIGAERGRLDFDMPEP--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
           A+  ++E  +N +IA++L V    +  E+ +A        +++      RVR+V +  + 
Sbjct: 137 ADPAALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRIG-QG 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                   CGGTHV+ TGEI  + +V         RR+
Sbjct: 196 AEQVDLQPCGGTHVARTGEIGRVLLVKIEKKGRQNRRV 233


>gi|41615330|ref|NP_963828.1| hypothetical protein NEQ547 [Nanoarchaeum equitans Kin4-M]
 gi|40069054|gb|AAR39389.1| NEQ547 [Nanoarchaeum equitans Kin4-M]
          Length = 381

 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 123/344 (35%), Gaps = 89/344 (25%)

Query: 13  EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKN-IFTGQEKPVYQAVTTVQKCVRAG 71
           +FF + G+  L S  ++      L F  + +V F+  I  G+ +P+   +   Q C+R  
Sbjct: 76  KFFSERGYVPLNSYPVVARWRDDLDFVIASIVDFQPHIVNGEIEPIANRIIIPQYCLR-- 133

Query: 72  GKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD 131
              +DL  VG + RH T F M+G  +F         +   DLL                 
Sbjct: 134 --FDDLPLVGYSGRHFTSFIMIGQHAFEKPENYNPYKYLRDLLDYF-------------- 177

Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS 191
                        G   ++++    +++ W+    G  GP  EIF+              
Sbjct: 178 ----------NYLGFKDNQLV---IHEDAWAGG--GNAGPSLEIFY-------------- 208

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL--- 248
                 +E+ N V+M ++  + +   +     +D G G ER+   L    N Y++     
Sbjct: 209 ----TGLELANQVYMVYKVIDNKLIPMENIRVLDMGAGHERIVWALNGSINAYEVTFPNS 264

Query: 249 ---FKHLIQASEQVTGMKYEGNNIVN-------------------------------HRV 274
               ++      ++  + Y G  I +                                 +
Sbjct: 265 LKYLRNYFDLDREIKDIYYLGYKIESKDDIINVAKEYAENFGFDLDYVLKAWEEYAKMYI 324

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318
           + DHLRS    I DG+LP+N G GY +R ++RR        G+ 
Sbjct: 325 VADHLRSVYLAIKDGMLPSNTGGGYNIRILLRRVFKIMEEKGFE 368


>gi|195039566|ref|XP_001990905.1| GH12380 [Drosophila grimshawi]
 gi|193900663|gb|EDV99529.1| GH12380 [Drosophila grimshawi]
          Length = 433

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 140/391 (35%), Gaps = 36/391 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +   VV + T  + E GGQ  D G   G      +  V +K  G    H +         
Sbjct: 43  RGFNVVCEDTILFPEGGGQPCDYGTINGQ----PVRSVLRK--GSTAVHFVESSSSFEEG 96

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++   +D+  R      HS  HL+            +     + P      ++    I+
Sbjct: 97  ATVQQLVDWPRRLDHMQQHSGQHLITALFDREFKYDTTSW--SLGPSVSYIQLSTPHLIS 154

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDA---IASGAAALLGTKYNDRVRVVSVEYED 685
              L  IE   ND+I +   V   +++ E A     + A   L   +    RVV +E  +
Sbjct: 155 RESLDLIERQANDLIREGRIVSVLLVDPEMAQDFQDARAPRGLPKDHEGLARVVRIEGIE 214

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S +C GTHV++  ++  + ++    +++ +  +  + G+R    L    ++ + L
Sbjct: 215 -----SNMCCGTHVTNLSQLQCIKLIYAEKVKSNVH-VHFVVGERCLRKLGEIFQREQQL 268

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-------FMS 798
            + LK      +  ++++ +  +  +    +  L  +  +    ++ +V        F  
Sbjct: 269 TAALKCGAHQHLELLQKLQQNVKSTRKSFVQ--LLKDFANAEAERLENVPKAMRPKYFAL 326

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           H    ++     + +    ++I   + +  GIS    A   +V+  D +       L + 
Sbjct: 327 HRRDGIEVDFTTTFLRNAPEEIFYFLTVSEGISVGSVAKGHMVLRGDPM-------LVQE 379

Query: 859 SAKV---LGGGGGGGRPHMAQSGGPNGNKAD 886
                  L  G G G+ +  Q    N  K  
Sbjct: 380 LGPQFLELLEGKGNGKENSFQGKINNLAKLQ 410


>gi|91773034|ref|YP_565726.1| Ala-tRNA(Pro) hydrolase [Methanococcoides burtonii DSM 6242]
 gi|91712049|gb|ABE51976.1| Threonyl/alanyl tRNA synthetase second additional domain
           [Methanococcoides burtonii DSM 6242]
          Length = 234

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 14/220 (6%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               VV ++T FY  +GGQ  DTG  + D     +T V K  +G   H   V    L+  
Sbjct: 23  DDRFVVLNRTAFYPSSGGQPHDTGKLVCDRKEYPVTFVGK-FDGKISH--EVSEAGLKAG 79

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  TID+  R      H+A H+L   + +  G+ +S  G+ I  +  R D    +   
Sbjct: 80  DKVKGTIDWDRRSLFMKYHTAAHILSAMIHSETGAKIS--GNQIAEEKTRVDFNL-EDFD 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYED 685
              + S E  VN+II + + V   I+ R++A+   +   L   +    + +RV+ +    
Sbjct: 137 RELIGSYEAKVNEIIDRKIDVEIEILPRDEALKIPSVVKLKDAFPPEIEEIRVIRIP--- 193

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   CGGTHV++TGEI  + I    +     RRI  
Sbjct: 194 --DVDDQACGGTHVANTGEIPHIEIFKAENKGKNNRRIYF 231


>gi|198471548|ref|XP_001355657.2| GA10567 [Drosophila pseudoobscura pseudoobscura]
 gi|198145967|gb|EAL32716.2| GA10567 [Drosophila pseudoobscura pseudoobscura]
          Length = 434

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 144/415 (34%), Gaps = 43/415 (10%)

Query: 502 VEEAVSGQ-----KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           V+ A  G+        VV + T  + E GGQ  D G   G      +  V +K  G    
Sbjct: 31  VDVATGGEARPVRGFNVVCEDTILFPEGGGQPCDYGTINGQ----PVRRVLRK--GNIAV 84

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H +           +  ++D+  R      HS  HL+            +          
Sbjct: 85  HFVESSSSFEEGAEVHQSLDWDRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSNVSH 144

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKYN 673
           ++ +  H   I+   L  IE   N++I +  PV   +++    E+   + A   L   + 
Sbjct: 145 IQLNTPHL--ISRESLDLIERQANELIREGRPVSVVLVDPEVDEEFNDARAPRGLPKDHE 202

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              RVV +E  +     S +C GTHV+   ++  + ++    ++  I  +  + G+R   
Sbjct: 203 GLARVVRIEGIE-----SNMCCGTHVTDLSQLQCIKLLYAEKVKTNIL-VHFVVGERVLR 256

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKRKLQLNVEDLSC 788
            L    ++ + L + LK      +  V+++ +  +      LQL+      +    +   
Sbjct: 257 KLGEVFQREQQLTTALKGGAQQHLELVQKLQQNVKGTRKSFLQLLKDFASAEAERLEDLS 316

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS------VLIVV 842
                  F  H    ++   + + +    +    GI   + +S+   A       +++  
Sbjct: 317 KAERPKYFSLHRRDGIEVDFIHTFL----RHAPEGIFYFLTVSEGGAAGSSGKGHLVLRG 372

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
              +++      L       L  G G G+    Q    N  K  + I  + S  K
Sbjct: 373 DPAVVEEIGPKFL------ELLEGKGNGKAGSFQGKINNLAKLPECIELLESHFK 421


>gi|320166188|gb|EFW43087.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 410

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 123/330 (37%), Gaps = 33/330 (10%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           T  + E GGQ  DTG   G    + +     +   + VHH    +  L        T+D+
Sbjct: 28  TVLFPEGGGQPHDTGSVNGTVAVVAVV----RKGAVAVHH---TQSPLEPGTPAHQTVDW 80

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R      HSA HL+    S   G   +      T      D+   +P+T   ++ +ED
Sbjct: 81  KRRWDHMQQHSAQHLITAVASDQFGLKTTSWSLGAT--KSTIDLVGERPLTDEVMQQLED 138

Query: 638 NVNDIIAQNLPV--VTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSSAL 693
            VN+IIA+   V   T   N  + +A  +  L          +RVVS+   D        
Sbjct: 139 KVNEIIAEGRDVVATTYQPNSPELMAVRSRGLPEDVLASGAAIRVVSIGGLDVNT----- 193

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C GTHV ST  +  + ++   + R G  R+  + G+R R+ L      +++L        
Sbjct: 194 CCGTHVKSTAHLQTVKLLHTEASRGG-SRLHFVAGERTRALLGAMYSDMRTLGKSFTCGL 252

Query: 754 GNVVGRVEE-------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIA----DVNFMSHIIS 802
             VV R E        +  + + L    A+   +   E+      A     V  + H   
Sbjct: 253 ELVVDRAEGAIKTSKMLGRQVKALLKEAAESAAKQLAEEAQQRTEAASGSAVVVVHHHRD 312

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISK 832
           E D   L +V   L       I+  + I+ 
Sbjct: 313 EADQDYLLTVASPLATL---PIVAFLSITP 339


>gi|254576931|ref|XP_002494452.1| ZYRO0A01782p [Zygosaccharomyces rouxii]
 gi|238937341|emb|CAR25519.1| ZYRO0A01782p [Zygosaccharomyces rouxii]
          Length = 445

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 152/430 (35%), Gaps = 49/430 (11%)

Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520
            +            + CQ+         ++++     +G+  +      K  V    T  
Sbjct: 1   MVTESLTRPTTVGALACQRNSFLFNGFKTTVISCEPVKGKPKDPV----KYLVELHDTIL 56

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           + E GGQ  D+G       R+ ++ V +       H        +    ++ + +D   R
Sbjct: 57  FPEGGGQPSDSGYLKCSNDRIPVSYVSRVGLHAKHHVG----QYIDPGTTVEVEVDQSKR 112

Query: 581 RQLSINHSATHLLHHA----------LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
                 H+  HLL             LS  +G  +S     +  +     +   + +TS 
Sbjct: 113 VDYMQQHTGQHLLSAILESEPYKLDTLSWSMGGVISAKKPTLEINDYFNYIELPRKLTSQ 172

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGG 687
           E++ +   VN++I+ N   ++ I    +A      + +   Y      +R + +     G
Sbjct: 173 EIEQVSHKVNELISINPQQISVIERTPEAHGDVQTSKIPDDYDLEKGVLRTIHI-----G 227

Query: 688 VHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S  C GTH+  T +I  + I  ++++IR    R+  + G R  ++ M  ++ + +  
Sbjct: 228 EIDSNPCCGTHLQRTNQIGSILISPNQTNIRGSNSRLYFMCGNRVVNYGMAVNKLVGTAK 287

Query: 747 SFLKVSQGNVVGRVEE---IWEE--------YRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
           S L   +  +  +++    + ++         ++L    + R L    E      + D  
Sbjct: 288 SSLSCLESEIPEKIDRQRDLIQKSSKREQFWIKELASYESDRLLAKVKEAGKAFLLKDEY 347

Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855
                + +V     K   + L K      ++L G  K  ++  +++V+E         + 
Sbjct: 348 GTLEFLLQV----FKEFTNKLGKTPNEYQLVLCGREKSTESGSVLIVSES-------GEK 396

Query: 856 ARLSAKVLGG 865
               A  L G
Sbjct: 397 ISTIAASLSG 406


>gi|33322806|gb|AAQ07138.1|AF496449_1 alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. lactis]
          Length = 193

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763
           I +  I+SE +I AG+RRIEA+T + A  +L G+ + L  + + +K     ++  ++  +
Sbjct: 7   IGVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASL 66

Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            EE R  +  +A  K Q+N             + D+  ++ I       +L+ + D  + 
Sbjct: 67  QEELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKS 126

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + +S +++L   S++K   ++ +  + L     A DL +  A +  GG G GRP+MAQ+G
Sbjct: 127 EGKSDVLILGAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIFXGGXG-GRPNMAQAG 185

Query: 879 GPNGNKAD 886
           G       
Sbjct: 186 GKKPEGLQ 193


>gi|170290573|ref|YP_001737389.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174653|gb|ACB07706.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 240

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 16/235 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
             +++ E V  AV G KV    D+T FY   GG   D G  +      ++ +V+K++  +
Sbjct: 15  CYLKEFEAVVRAVEGDKVS--LDRTAFYPSGGGLPSDVGKLLRGEEEFEVIEVRKESGNV 72

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           +     V R  L    ++   +D+  R ++   H+A H L   L++  G  V   G+ + 
Sbjct: 73  WH---TVGRPGLTVGDAVRGILDWDKRYRIMRMHTALHALIALLNSKYG--VLVTGNNVG 127

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D  R DV   +P     ++ +    N ++++   V    ++RE+A+       L     
Sbjct: 128 YDRSRVDVNLERPDR-ELVEEVIAETNKLLSEGREVKIYYLSREEAMKIPGIIKLAKALP 186

Query: 674 ---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              D++R+V +E  D         GG HV +T EI  +  +   +     RRI  
Sbjct: 187 PDVDKLRIVEIEGID-----IQADGGPHVRNTREIGEIVFLGMENKGKNNRRIHF 236


>gi|229172419|ref|ZP_04299978.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus MM3]
 gi|228610890|gb|EEK68153.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus MM3]
          Length = 236

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  ++   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKIFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  ALVKLGPVKLEVNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVKKVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|195448647|ref|XP_002071751.1| GK24978 [Drosophila willistoni]
 gi|194167836|gb|EDW82737.1| GK24978 [Drosophila willistoni]
          Length = 432

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 145/402 (36%), Gaps = 34/402 (8%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
            +GE  +  + G    VV + T  + E GGQ  D G   G  +R  +        G    
Sbjct: 32  DKGETTKRQLKG--FNVVCEDTILFPEGGGQPCDYGSLGGHPVRNVV------RNGTQAV 83

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H +           +   ++++ R      HS  HL+     +      +     +    
Sbjct: 84  HFVESPESFEEGTEVEQVLNWERRLDHMQQHSGQHLISALFDSEFKYETTSW--WLGTST 141

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE---DAIASGAAALLGTKYN 673
               +     I+   L  IE   N++I +   V   +++ E   D   + A   L   + 
Sbjct: 142 CYVQLKTPHLISRESLDLIEQKCNNLIREGREVTVHLIDPEKEYDFQGARAPRGLPKDHV 201

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
              RVV++E  +G      +C GTHV++  ++  + I+    ++  +  +  + G+R   
Sbjct: 202 GLARVVNIEGVEGN-----MCCGTHVTNISQLQAIKILYCEKVKTNVL-VHFVVGERVLR 255

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR------KLQLNVEDLS 787
            L    ++ + + + +K      +  ++++ +  +  +    +            +EDL 
Sbjct: 256 KLAEVFQREQQITAAIKGGPQQHLDLLQKLQQNVKMTRKCFQQLLKDFAHAEADRLEDLP 315

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK--KASVLIVVTED 845
             +     F  H    ++   + + +    ++I   + +  G++     K  +++    +
Sbjct: 316 KAQRPKY-FALHRRDGIEVDFINAFLSHAPEEIFYFLTVSEGVAAGSQAKGHLVLRGNPE 374

Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           ++++     L       L  G G G+    Q    N +K D 
Sbjct: 375 VVEKLGPQFL------ELLEGKGNGKDGKFQGKINNLSKLDD 410


>gi|71744796|ref|XP_827028.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831193|gb|EAN76698.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 468

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 146/393 (37%), Gaps = 44/393 (11%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           Q  +V+   +  + + GGQ  D G  I       L +  VQ++ +   ++       +L+
Sbjct: 61  QSYDVILTDSVLFPDGGGQPCDHGVLIRRETNEELPVRVVQRRGDSCVMNL----PCMLK 116

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D+  R     +HSA HLL   +       +      +T       +   K 
Sbjct: 117 VGEDVQLRVDWDRRLDHMQHHSAQHLLTAVVEDPSFCGLPTVSWALTQPYCHIVLPTGKR 176

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMN----------REDAIASGAAALLGTKYNDRV 676
           I    L+ IE++ N +IA+ +PV  R+ +          RE         L G++     
Sbjct: 177 IEPEMLQRIEEHCNRVIARAVPVRCRVYSSKEEYENDLQREPEKNDDGGRLRGSRPIPPD 236

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH-- 734
               +   D        C GTHV++  ++ +L ++ + +      ++  I G+R R    
Sbjct: 237 VAGPIRIIDMEGIDCCTCCGTHVTNLAQLQVLKLLHQETKGD-TLKLFFIAGERVRRFFG 295

Query: 735 --LMGQDEKLKS---------LASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                + E +K          +++ ++  +    +  R++ + +E  KL+      + + 
Sbjct: 296 DMYGRERELMKEMGGIRPEDFVSAAIRKGKDFVELEKRLKHMTQELMKLRSEKLIAEAKQ 355

Query: 782 NVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-----GISKEKK 835
             E+      +     + +   +VD+     + D L++   + + +         + +  
Sbjct: 356 LSENGKGDSASHRPPVVVYRRDDVDADFFSGLRDELRQACPNCVGVFAWAMAPLTAAKTG 415

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             +++  TE +        LA +    L G GG
Sbjct: 416 QFMIVGPTESVE------VLAPVVCAALEGKGG 442


>gi|163796942|ref|ZP_02190898.1| predicted metal-dependent hydrolase [alpha proteobacterium BAL199]
 gi|159177689|gb|EDP62240.1| predicted metal-dependent hydrolase [alpha proteobacterium BAL199]
          Length = 236

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 17/226 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVE 561
               +  +  +V D+T FY   GGQ GD+G     DG ++ ITD +K   GI  H     
Sbjct: 17  ATVTAVGETGIVLDRTVFYPTGGGQPGDSGSLTRPDGAQVSITDTRKVEGGI-AHVPAEG 75

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             +L     +  T+D+  R +    H+A H++    S I G      G  I     R D 
Sbjct: 76  AAMLSVGDKVTATLDWDRRYRHMRVHTALHVM---CSQIQG---GVTGGQIGDGKGRLDF 129

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVR 677
              +P    E +S+ +++N +IA + P+    +  E+  A+       ++       RVR
Sbjct: 130 NL-EPENVPEKESLTEHLNALIAVDHPLGISWITDEELTANPDLVRTMSVKPPMGAGRVR 188

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++ +    G       CGGTHV STGEI  + I    S     RRI
Sbjct: 189 MIRI----GDAVDYQPCGGTHVKSTGEIGRIAITKIESKGKQNRRI 230


>gi|83647732|ref|YP_436167.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
 gi|83635775|gb|ABC31742.1| predicted metal-dependent Hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Hahella chejuensis KCTC 2396]
          Length = 235

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 19/230 (8%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHH 557
            E + + V+ ++  V+ D+T FY   GGQ GDTG       R+ ++TD +K  +G  + H
Sbjct: 13  KECIAKVVAIKENSVLLDRTIFYPLGGGQPGDTGEFENQSARVWKVTDTRKDPDGEGILH 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +     L   M L L ID++ R      H+  HLL   +           G  I+ D  
Sbjct: 73  ILDRSEGLEEGMELALRIDWERRYAHMRMHTCLHLLCSLI------EAPVTGGNISVDKG 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYN 673
           R D           L   E  +N ++A   PV  R +  E+  A        ++   K  
Sbjct: 127 RLDFYLDYSPDKDGL---ESRINALVAAGHPVSYRWITDEELDAQPELVRTLSVQPPKGA 183

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +VR+VSV+  D        CGGTHV +T EI  + I    +   G RR+
Sbjct: 184 GKVRLVSVDGVDL-----QPCGGTHVKNTAEIGPVLIGKIENKGKGNRRV 228


>gi|288958139|ref|YP_003448480.1| threonyl/alanyl tRNA synthetase SAD [Azospirillum sp. B510]
 gi|288910447|dbj|BAI71936.1| threonyl/alanyl tRNA synthetase SAD [Azospirillum sp. B510]
          Length = 235

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 19/228 (8%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG--IFVHHAI 559
           V    +  +  +  D+T FY   GGQ GD+G    DG  ++I D  K   G    +H   
Sbjct: 15  VATVTTVDERGIRLDRTVFYPTGGGQPGDSGALRFDGFTVRIKDTVKGDAGPDDVIHVPE 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             + +     ++   ID++ R +    H+A HLL   +        S  G  I  D  R 
Sbjct: 75  EGQELPDPGTAVEAEIDWERRYRHMRMHTALHLLCAVVPG------SVTGGQIGADKSRL 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDR 675
           D          ++ +  + VN +IA + PV TR ++ E+  A        ++       R
Sbjct: 129 DFNVPAESLDKDVLA--EAVNRLIAADTPVGTRWISDEEMAAQPELVRTMSVKPPAGGGR 186

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           VR+++VE  D        CGGTHV+ TGEI  + +    +     RR+
Sbjct: 187 VRLLNVEGVDL-----QPCGGTHVARTGEIGGIEVTKIENKGKQNRRV 229


>gi|50306437|ref|XP_453192.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642326|emb|CAH00288.1| KLLA0D02794p [Kluyveromyces lactis]
          Length = 452

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 150/407 (36%), Gaps = 41/407 (10%)

Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515
           + +G   +  +        + CQ+         ++++   V + +           E+  
Sbjct: 6   KLVGTLAMVKTANHTFVGSLACQRDSFKAKEFETTVIACDVGKKK--------NTFEIEL 57

Query: 516 DQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
             T  + E GGQ  D+G   +  G  + ++ V ++     +H   +    +     + + 
Sbjct: 58  QDTILFPEGGGQPSDSGKFLLKTGASIPVSSVFRRG----LHAVHITDRDVPVGAKVSVE 113

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHV---------SQNGSCITPDGLRFDVTHSK 625
           ID+  R      H+  HL+   L    G            S+    I P  L   +  ++
Sbjct: 114 IDWDKRLDYMQQHTGQHLVSAILEQKWGLKTLSWSMGGIPSEKKPKIEPYDLFNYLEINR 173

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVE 682
            +TS E+K + D V + I  N   +T      ++    +   +   Y      +RVV +E
Sbjct: 174 RLTSEEVKELSDTVTEYITVNPKTITIFEGDPESQGEISTHKVPDDYDLSKGVLRVVHIE 233

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             D        C GTH+ +T +I  + I+ S+SS+R    R+  + G R R + +  +E 
Sbjct: 234 DLD-----KNPCCGTHLQTTSQISSVLILPSQSSVRGTNSRLFFMCGDRVRRYALFSNEV 288

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           + +    L  S+  +  + + +    + +Q    + +  +      C K    + ++ + 
Sbjct: 289 ISNTKKLLSCSEDQIEHKCDMLL---KNMQKTTKREQFWIKELAGFCSK----SLITDLK 341

Query: 802 SEVDSKELKS---VMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               +  ++     ++ L +       ++ G S E    VL    + 
Sbjct: 342 ENSKAHFIRDEYGTLEFLTQLYNENNQLIAGSSLEDYCYVLAGREKA 388


>gi|89054486|ref|YP_509937.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Jannaschia sp. CCS1]
 gi|88864035|gb|ABD54912.1| Ala-tRNA(Pro) hydrolase [Jannaschia sp. CCS1]
          Length = 246

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 87/229 (37%), Gaps = 21/229 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA------EGIFVHHAIVER 562
           ++  V+ D+T FYA  GGQ GD+G    DG RL I    K         G  V       
Sbjct: 25  EEGGVILDRTIFYARGGGQPGDSGALTWDGHRLPIATAVKGPIPVEGAGGAIVLIPAEPA 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      +   +D+  R      H+A HLL   +       +   G  +  D  R D  
Sbjct: 85  PLPPVGAEVEQQLDWDRRLGHMRIHTALHLLSVVIP------LPVTGGAVAADKGRLDFL 138

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRV 678
             +P    +   +E  +N +I ++LPV    +      A+       ++        +R+
Sbjct: 139 MPQP--PEDKMILEGQLNALITRDLPVSVEWITESQLNANPNLVKTLSVQPPSGAGEIRL 196

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR--IEA 725
           V +  E   V     CGGTHV+ T EI  L I    +     RR  IE 
Sbjct: 197 VRIGDEAAPVD-LQPCGGTHVARTSEIGKLAITKVENKGKQNRRVTIEF 244


>gi|257051705|ref|YP_003129538.1| Threonyl/alanyl tRNA synthetase SAD [Halorhabdus utahensis DSM
           12940]
 gi|256690468|gb|ACV10805.1| Threonyl/alanyl tRNA synthetase SAD [Halorhabdus utahensis DSM
           12940]
          Length = 265

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 92/230 (40%), Gaps = 12/230 (5%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +     V   +  +V D T FY E GGQ  D G    DG    + DV+K    +      
Sbjct: 39  DFEATVVEATEESIVLDGTYFYPEGGGQPADRGTIEWDGGAAAVVDVRKDHGEVHHEIDD 98

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           VE  +     + +  ID   R      H+A H+L   +  +     +  G+ I  D  R 
Sbjct: 99  VEGDLPAEGETAIGQIDENRREAHRRMHTAQHILSRVV--LGAFDATTAGNQIHADCSRI 156

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDR 675
           D         A+L+ IE+  N++I ++L V      RE    + A       L   + + 
Sbjct: 157 DFE-PADFDDADLELIEERTNEVIERDLRVNKDERPRETVEETVAEGRSNLSLLPDHVEE 215

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +RVV +            CGGTHV  TGEI  + I +  S  A + RIE 
Sbjct: 216 LRVVEI-----DDFDMCPCGGTHVDRTGEIGPIEITNRLSKGAEVERIEF 260


>gi|163736271|ref|ZP_02143690.1| hypothetical protein RGBS107_14106 [Phaeobacter gallaeciensis
           BS107]
 gi|161390141|gb|EDQ14491.1| hypothetical protein RGBS107_14106 [Phaeobacter gallaeciensis
           BS107]
          Length = 243

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 17/223 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGIL 565
           +  +V +Q+ FYA  GGQ GDTG            L IT+  K   G  V        + 
Sbjct: 25  EGGLVLNQSVFYATGGGQPGDTGSLSWSDGAGDHHLPITNTVKGEAGRIVLIPAESEPLP 84

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D+  R      H+A HLL   +       +  +G  I  +  R D    +
Sbjct: 85  AVGQEVTQALDWDRRFGHMRVHTALHLLSVVIP------LPVSGGSIGAEKGRLDFNMPE 138

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSV 681
                + +++ED +N +IA++L V  R +   +  A+       ++   + N R+R+V +
Sbjct: 139 A--PEDKQALEDALNALIARDLEVSERWITEAELDANPELVKTMSVAPPRGNGRIRLVRI 196

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              D  +     CGGTHV ST EI  + +          RR+ 
Sbjct: 197 GSADEQID-LQPCGGTHVRSTAEIGPIRLGKVEKKGKHNRRVY 238


>gi|195134891|ref|XP_002011870.1| GI14436 [Drosophila mojavensis]
 gi|193909124|gb|EDW07991.1| GI14436 [Drosophila mojavensis]
          Length = 431

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 102/274 (37%), Gaps = 21/274 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +   V+ + T  + E GGQ  D G   G  +R  +       +G    H +         
Sbjct: 41  RGFNVICENTILFPEGGGQPCDYGTINGQPVRSVV------RKGSTAVHFVESPTSFEEG 94

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKP 626
             +   +D+  R      HS  HL+            +    GS ++       ++    
Sbjct: 95  AEVQQHLDWARRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVS----HIQLSTPHL 150

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEY 683
           I+   L  IE   ND+I +  PV   +++ E A     + A   L   +    RVV +E 
Sbjct: 151 ISRESLDLIERQANDLIREGRPVSVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEG 210

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            +     S +C GTHVS+  ++  + ++    ++  +  +  + G+RA   L     + +
Sbjct: 211 IE-----SNMCCGTHVSNLSQLQCIKLLYAEKVKTNVL-VYFVVGERALRKLGEVFAREQ 264

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            L   LK      +  V+++ +  +  +    + 
Sbjct: 265 QLTVALKGGPQQHLELVQKLHQNIKSTRKAFQQL 298


>gi|20090862|ref|NP_616937.1| alanyl-tRNA synthetase domain-containing protein [Methanosarcina
           acetivorans C2A]
 gi|74551374|sp|Q8TPA0|ALAXM_METAC RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|19915934|gb|AAM05417.1| alanyl-tRNA synthetase domain protein [Methanosarcina acetivorans
           C2A]
          Length = 245

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 20/244 (8%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKK 549
           +   +++ E + E V+  K  VV D+T FY E+GGQ  DTG  +   DG   ++  V K 
Sbjct: 8   LDCYLREFEAIVEKVTDDK-YVVLDRTAFYPESGGQPSDTGKLVREEDGAEFEVVYVGKF 66

Query: 550 AEGIFVHHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
              I      V+      L+    +   ID+  R +    H+ATH++ + +    G+ ++
Sbjct: 67  NGDISHEITPVDGNAALGLKAGDRVRGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQIT 126

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---- 662
             G+ +  D  R D +  +     +    E   N +I +N PV   +++R++A       
Sbjct: 127 --GNQLGLDKSRVDFSL-EAFDRDKFAEYEKIANKVITENHPVNLYLVSRKEAEEKLSRL 183

Query: 663 -GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              A     + ++ VR+V +E       +   CGGTH+ +TGEI  + I    +     R
Sbjct: 184 TTLAKGFSEEISE-VRLVEIEG-----ITIEACGGTHLKNTGEIKGIKIEKLQNKGKSNR 237

Query: 722 RIEA 725
           R+  
Sbjct: 238 RMYF 241


>gi|120613091|ref|YP_972769.1| metal-dependent hydrolase [Acidovorax citrulli AAC00-1]
 gi|120591555|gb|ABM34995.1| Predicted alanyl-tRNA synthetase-like metal-dependent hydrolase
           [Acidovorax citrulli AAC00-1]
          Length = 255

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 22/234 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQK------KAEGIFVHHAIVE 561
           Q   +V D+T FY   GGQ GD G  +  DG  + ITD +K      K     VH     
Sbjct: 33  QGGGIVLDRTVFYPLGGGQAGDAGVLVRADGREVPITDTRKGKDAEGKPTAAIVHVPAPG 92

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                    +   ID++ R +L   H+ THLL H ++         NG  +TPD  R D 
Sbjct: 93  AEPPAVGEEVTARIDWERRHRLMRFHTTTHLLCHLVAQ------PVNGCSVTPDAARLDF 146

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVR 677
               P+ +A L +    +  ++A+  PV    +   +  A        ++   + + +VR
Sbjct: 147 HMDGPLDAAALNA---GIARLVAEAHPVAIGAITDAELDAQPELVKSMSVQPPRGSGQVR 203

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            V V  +         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 204 TVRVGTDGQTQIDLQPCGGTHVANTAEIGAVVVTKIEKKGAMARRV--VLGFAA 255


>gi|108805363|ref|YP_645300.1| Ala-tRNA(Pro) hydrolase [Rubrobacter xylanophilus DSM 9941]
 gi|108766606|gb|ABG05488.1| Ala-tRNA(Pro) hydrolase [Rubrobacter xylanophilus DSM 9941]
          Length = 236

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 14/231 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     V     EVV D+T FY   GGQ  D G      +R  + DV+ +A G  VH  +
Sbjct: 14  EFEARVVRLDGREVVLDRTAFYPGGGGQPADRGALGIGPVRAAVVDVR-RAGGEIVH--V 70

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           ++R I  T   L   +D++ R      H+A H+L   +    G+ V+  G  +  D  R 
Sbjct: 71  LDRPIPDTVRRLRGELDWERRYAHMRYHTALHVLSGVIWRRFGAKVT--GGQMRADRARM 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDR 675
           D +     TS  +  IE   N  +A+  PV    + RE+A+ +         L  +  + 
Sbjct: 129 DFSFPGEWTSEVVGEIERLTNAALAEERPVRVYELPREEALENPDLIRTQVNLVPERVEL 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           VRVV +E  D     +   GGTHV++T E+  + I S  S     +R+E +
Sbjct: 189 VRVVEIEGID-----TQADGGTHVANTREVGRMEITSHKSKGRRNKRVEFV 234


>gi|195587928|ref|XP_002083713.1| GD13880 [Drosophila simulans]
 gi|194195722|gb|EDX09298.1| GD13880 [Drosophila simulans]
          Length = 466

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 156/409 (38%), Gaps = 60/409 (14%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVE 561
             + +V   + FY E+GGQ  D G  +    +       L++  V K      VH   + 
Sbjct: 22  DLISIVTAASNFYYESGGQQSDGGKILVSNHQHPEHPHSLEVISV-KHLNDCVVHVCKLS 80

Query: 562 RGI----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L     + L +D Q R+  + +H+ATHLL+ A+ ++      Q  S +T D  
Sbjct: 81  SPTDTFQLAIGDEVELLVDAQQRQLNTCHHTATHLLNAAIRSLFKKVTYQVSSSVTSDQC 140

Query: 618 RFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDR 675
           + ++    K I  ++++ IED +N +I    PV  ++++  + +       + G  Y ++
Sbjct: 141 KLELGLLGKRIQKSDVQLIEDLINRVICSAAPVEVQLLSAAEVLEQNDITMVPGEVYPEQ 200

Query: 676 V-RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
             R+V+VE  +  + S  LC GTH ++T E+    IV+            A+ GQ A + 
Sbjct: 201 GLRLVNVESPELQLSSKELCCGTHATNTSELSCFCIVNLKQTNRARFAFTAVAGQAAENV 260

Query: 735 ------LMGQDEKLK---SLASFLKVSQGNV----------------------VGRVEEI 763
                 L  + + L+           ++  +                      + R+ E+
Sbjct: 261 LKTAALLRHRVDLLEKQFQTDKLTNATEAELQTIRHNMLHTDIKLPYAFKMDTLERITEM 320

Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FM------SHIISEVDSKELKSVMDAL 816
            +  +       K  + + +  L   K  D + F+      S ++ E+        +   
Sbjct: 321 LKRIKDSSRTTLKEFVDVEMRTLLQEKPLDTHPFILHYITSSALVEEIP-------LQRA 373

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
            K  Q   I+++ +      +   V    + ++FNA    +  A    G
Sbjct: 374 TKVCQDRPILVISVCDSVVKARCCVPANCITEKFNASAWLQSFADTFNG 422


>gi|254488453|ref|ZP_05101658.1| alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           GAI101]
 gi|214045322|gb|EEB85960.1| alanyl-transfer RNA synthetase domain protein [Roseobacter sp.
           GAI101]
          Length = 239

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           ++  +V D T FY   GGQ GD+G  I DG R+ I    K      V        +    
Sbjct: 24  EEGGIVLDSTIFYPTGGGQPGDSGWLIWDGQRMPIATTVKGQGDAIVLVPAEPLPLPGIG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  T+D+  R +    H+  HLL   +           G  I+    R D    +   
Sbjct: 84  THVTQTLDWDRRHRHMRVHTMLHLLSVVVP------FGVTGGQISARQGRLDFDMPEA-- 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             + + IE  +N+ +  +L V  R + + +  A+       A+   K  +RVR+V +  +
Sbjct: 136 PDDREGIETALNNFVMADLRVSDRWITQAELDAAPELVKTMAVKPPKSAERVRLVQIG-D 194

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTH++ TGEI  L +          RRI 
Sbjct: 195 QSSWIDLQPCGGTHIARTGEIGALRLGKIEKKGRNNRRIY 234


>gi|195564917|ref|XP_002106055.1| GD16642 [Drosophila simulans]
 gi|194203425|gb|EDX17001.1| GD16642 [Drosophila simulans]
          Length = 436

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/389 (18%), Positives = 149/389 (38%), Gaps = 34/389 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ + T  + E GGQ  D G   G      + +VQ+K  G+   H +        +  
Sbjct: 41  FNVICEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GLTAVHFVESPTSFEQDAE 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPIT 628
           ++LT+DYQ R      HS  HL+            +    GS ++       ++    I+
Sbjct: 95  VLLTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVS----YIQLSTPHLIS 150

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYED 685
              L  IE   ND+I +   V   +++ E A     + A   L   +    RVV +E  +
Sbjct: 151 RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIE 210

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S +C GTHV++  ++  + ++    +++ +  +  + G+R    L    ++ + L
Sbjct: 211 -----SNMCCGTHVTNLSQLQCIKLLYAEKVKSNVL-VHFVVGERVLVKLGEVFQREQQL 264

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDL--SCHKIADVNFMSHI 800
            + LK   G  +  V+++ +  +  +       KR      E L     K     F  H 
Sbjct: 265 TAALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKRYATAEAERLCDLPKKDRPKYFSLHR 324

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK--KASVLIVVTEDLLDRFNAVDLARL 858
              ++   + + +    ++I   + +   +      K  +++    +++ R     L   
Sbjct: 325 RDGIEVDFINTFLRVAPEEIFYFLTVSESVFAGSSAKGHLVLRGDPEIVGR-----LGPQ 379

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++L  G G G+    Q    N  + ++
Sbjct: 380 FVEILE-GKGNGKEGNFQGKINNLARLEE 407


>gi|195477347|ref|XP_002100173.1| GE16301 [Drosophila yakuba]
 gi|194187697|gb|EDX01281.1| GE16301 [Drosophila yakuba]
          Length = 436

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 144/391 (36%), Gaps = 38/391 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  
Sbjct: 41  FNVICENTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GTTAVHFVESSTSFEQDAE 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPIT 628
           ++LT+DYQ R      HS  HL+            +    GS ++       ++    I+
Sbjct: 95  VLLTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVS----YIQLSTPHLIS 150

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYED 685
              L  IE   ND+I +   V   +++ E A     + A   L   +    RVV +E  +
Sbjct: 151 RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIE 210

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S +C GTHV++  ++  + ++    ++  +  +  + G+R  + L    ++   L
Sbjct: 211 -----SNMCCGTHVTNISQLQCIKLLYAEKVKTNVL-VHFVVGERVLAKLGEVFQRELQL 264

Query: 746 ASFLKVSQGNVVGRVEEIWEEYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
              LK   G  +  V+++ +  +       +L   +A  + +   +     +    +   
Sbjct: 265 TQALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKDYATAEAERLADLPKKDRPKYFSLHR 324

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
               EVD       ++   +    GI   + +S+    S        L+ R +A  + +L
Sbjct: 325 RDGIEVD------FINTFLRLAPEGIFYFLTVSEG--VSAGSGAKGHLVLRGDAEIVGKL 376

Query: 859 SAKV--LGGGGGGGRPHMAQSGGPNGNKADQ 887
             +   +  G G G     Q    N  +   
Sbjct: 377 GPQFVEILEGKGNGNEGSFQGKINNLARLQD 407


>gi|126461592|ref|YP_001042706.1| threonyl/alanyl tRNA synthetase, SAD [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103256|gb|ABN75934.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides ATCC 17029]
          Length = 239

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FYA  GGQ GD+G    +G R+ +    K   G           +     
Sbjct: 25  EGGILVDRSIFYATGGGQPGDSGFLDWEGGRIDVATAVKADGGRIALVPAEAGPLPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+  T+D++ R +    H+A HLL   +       +   G  I  +  R D    +P   
Sbjct: 85  SVRQTLDWERRHRHMRVHTALHLLSVVIP------LPVTGGQIGAERGRLDFDMPEP--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
           A+  ++E  +N +IA++L V    +  E+ +A        +++      RVR+V +  + 
Sbjct: 137 ADPAALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRIG-QG 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV+ TGEI  + +          RR+ 
Sbjct: 196 AEQVDLQPCGGTHVARTGEIGRVLLGKIEKKGRQNRRVT 234


>gi|221633766|ref|YP_002522992.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221155914|gb|ACM05041.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 251

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 8/214 (3%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V+ D+T FY   GGQ  DTG  +  DG   ++  +++      + H +++R       ++
Sbjct: 29  VILDRTAFYPGGGGQPHDTGELVSTDGRSWRVVSLRRGTTADEIVH-LLDREPPPVGTAV 87

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D+  R +L   H+A H+L   +    G+ V+  G+ +  D  R D    + +    
Sbjct: 88  RGVLDWDRRYRLMRFHTALHVLSAVVFREFGALVT--GANLDVDKARMDFEL-EDLAPER 144

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHS 690
           +  IE   N+ IA+ LPV    + R +A       L+ TK N     + S+   +     
Sbjct: 145 VARIEQLANEAIARGLPVRWWTIPRAEAERI--PDLIRTKVNLLPPSIQSIRVVEISGLD 202

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               GGTHV +T EI  + +V   S     +RIE
Sbjct: 203 LQADGGTHVRNTREIGGIRVVGTRSKGRNNKRIE 236


>gi|163741200|ref|ZP_02148592.1| hypothetical protein RG210_17110 [Phaeobacter gallaeciensis 2.10]
 gi|161385553|gb|EDQ09930.1| hypothetical protein RG210_17110 [Phaeobacter gallaeciensis 2.10]
          Length = 243

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 17/223 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGIL 565
           +  +V +Q+ FYA  GGQ GDTG            L IT+  K   G  V        + 
Sbjct: 25  EGGLVLNQSVFYATGGGQPGDTGRLSWSDGAGDHHLPITNTVKGEAGRIVLIPAEGEPLP 84

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D+  R      H+A HLL   +       +  +G  I  +  R D    +
Sbjct: 85  AVGQEVTQALDWDRRFGHMRVHTALHLLSVVIP------LPVSGGSIGAEKGRLDFNMPE 138

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSV 681
                + +++ED +N +IA++L V  R +   +  A+       ++   + N R+R+V +
Sbjct: 139 A--PEDKQALEDALNALIARDLEVSERWITEAELDANPELVKTMSVAPPRGNGRIRLVRI 196

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              D  +     CGGTHV ST EI  + +          RR+ 
Sbjct: 197 GSADEQID-LQPCGGTHVRSTAEIGPIRLGKVEKKGKQNRRVY 238


>gi|261331286|emb|CBH14276.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 468

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 146/393 (37%), Gaps = 44/393 (11%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           Q  +V+   +  + + GGQ  D G  I       L +  VQ++ +   ++       +L+
Sbjct: 61  QSYDVILTDSVLFPDGGGQPCDHGVLIRRETNEELPVRVVQRRGDLCVMNL----PCMLK 116

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D+  R     +HSA HLL   +       +      +T       +   K 
Sbjct: 117 VGEDVQLRVDWDRRLDHMQHHSAQHLLTAVVEDPGFCGLPTVSWALTQPYCHIVLPTGKR 176

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMN----------REDAIASGAAALLGTKYNDRV 676
           I    ++ IE++ N +IA+ +PV  R+ +          RE         L G++     
Sbjct: 177 IEPEMVQRIEEHCNRVIARAVPVRCRVYSSKEEYENDLQREPEKNDDGGRLRGSRPIPPD 236

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH-- 734
               +   D        C GTHV++  ++ +L ++ + +      ++  I G+R R    
Sbjct: 237 VAGPIRIIDMEGIDCCTCCGTHVTNLAQLQVLKLLHQETKGD-TLKLFFIAGERVRRFFG 295

Query: 735 --LMGQDEKLKS---------LASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                + E +K          +++ ++  +    +  R++ + +E  KL+      + + 
Sbjct: 296 DMYGRERELMKEMGGIRPEDFVSAAIRKGKDFVELEKRLKHMTQELMKLRSEKLIAEAKQ 355

Query: 782 NVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-----GISKEKK 835
             E+      +     + +   +VD+     + D L++   + + +         + +  
Sbjct: 356 LSENGKGDSASHRPPVVVYRRDDVDADFFSGLRDELRQACPNCVGVFAWAMAPLTAAKTG 415

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             +++  TE +        LA +    L G GG
Sbjct: 416 QFMIVGPTESVE------VLAPVVCAALEGKGG 442


>gi|115704026|ref|XP_001203291.1| PREDICTED: similar to Alanyl-tRNA synthetase, mitochondrial
           precursor, putative, expressed, partial
           [Strongylocentrotus purpuratus]
 gi|115755043|ref|XP_796369.2| PREDICTED: similar to Alanyl-tRNA synthetase, mitochondrial
           precursor, putative, expressed, partial
           [Strongylocentrotus purpuratus]
          Length = 111

 Score =  144 bits (363), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 2/113 (1%)

Query: 146 LSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVF 205
           +  ++++      NFW M E  PCGPC EI FD+           + +    +EIWNLVF
Sbjct: 1   IPDERVMPFGMKVNFWEMGEV-PCGPCIEIHFDRIGD-RDARAMVNMDVPDVLEIWNLVF 58

Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
            QF +++     +LPK  +DTGMGLER+A+V+Q +++NYD DLF  +  A  +
Sbjct: 59  TQFNRESDGTLNVLPKKCVDTGMGLERIASVIQGRSSNYDTDLFMPIFDAIHK 111


>gi|221638559|ref|YP_002524821.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides KD131]
 gi|221159340|gb|ACM00320.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides KD131]
          Length = 239

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 13/218 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FYA  GGQ GD+G    +G R+ +    K   G           +     
Sbjct: 25  EGGILVDRSIFYATGGGQPGDSGFLDWEGGRIDVATAVKADGGRIALVPAEAGPLPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+  T+D++ R +    H+A HLL   +       +   G  I  +  R D    +P   
Sbjct: 85  SVRQTLDWERRHRHMRVHTALHLLSVVIP------LPVTGGQIGAERGRLDFDMPEP--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
           A+  ++E  +N +IA++L V    +  E+ +A        +++      RVR+V +  + 
Sbjct: 137 ADPAALEAELNALIARDLAVTEDWITDEELLADPSIVKTMSVMPPTGQGRVRLVRIG-QG 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                   CGGTHV+ TGEI  + +          RR+
Sbjct: 196 AEQVDLQPCGGTHVARTGEIGRVLLGKIEKKGRQNRRV 233


>gi|228945376|ref|ZP_04107731.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814348|gb|EEM60614.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 236

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 S+ L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGSVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|296536252|ref|ZP_06898368.1| alanyl-tRNA synthetase AlaS [Roseomonas cervicalis ATCC 49957]
 gi|296263406|gb|EFH09915.1| alanyl-tRNA synthetase AlaS [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score =  144 bits (362), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 15/235 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A +Q+ E      +G +  VV D+TPFYA+AGGQ GDTG    +G  + + +  K   G 
Sbjct: 10  AYLQEAEATV-LSAGPEG-VVLDRTPFYAQAGGQPGDTGVLAWEGGAMPVANAVKGEAGA 67

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +H    E  +      +   +D+  R +L   H++ HLL   +    G+ V+  G  I 
Sbjct: 68  VLHVPAPEAALPSVGARVTARLDWARRHRLMRMHTSLHLLCSLIP---GAGVT--GGQIG 122

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLG 669
            +  R D   ++P T   L      +  + A +  V  R ++  +  A+       ++  
Sbjct: 123 VEKSRLDFDLAEPPTKEWLSE---RLTALAAADHAVTERWISDAELDANPSLVRTLSVQP 179

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +   +VR+V +  E+  V     CGGTHV  TGEI  + +    +     RR+ 
Sbjct: 180 PRGGGQVRLVRIGAEEAPVD-LQPCGGTHVRQTGEIGAITVTKLENKGRQNRRVY 233


>gi|196038963|ref|ZP_03106270.1| alanyl-tRNA synthetase domain protein [Bacillus cereus NVH0597-99]
 gi|196030108|gb|EDX68708.1| alanyl-tRNA synthetase domain protein [Bacillus cereus NVH0597-99]
          Length = 236

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +   V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNTVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|146276871|ref|YP_001167030.1| threonyl/alanyl tRNA synthetase, SAD [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555112|gb|ABP69725.1| Ala-tRNA(Pro) hydrolase [Rhodobacter sphaeroides ATCC 17025]
          Length = 239

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  ++ D++ FY   GGQ GD+GC + +G R+ I    K   G           +     
Sbjct: 25  EGGILIDRSIFYPTGGGQPGDSGCLVWEGGRIPIATAIKAEGGRVALVPAEAAALPPEGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            +   +D+  R +    H+A HLL   +       +   G  I  +  R D    +P   
Sbjct: 85  PVRQILDWDRRHRHMRVHTALHLLSVVIP------LPVTGGQIGAERGRLDFDMPEP--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYED 685
           A++ ++E+ +N ++ ++LPV    +   + +A        +++      RVR+V +  + 
Sbjct: 137 ADVAALEEALNALVGRDLPVSEDWITDAELLADPSIVKTMSVMPPTGQGRVRLVRIG-QG 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                   CGGTHV+ TGEI  + I          RR+ 
Sbjct: 196 ADQVDLQPCGGTHVARTGEIGRVAIGKIEKKGRQNRRVT 234


>gi|52143685|ref|YP_083143.1| alanine--tRNA ligase [Bacillus cereus E33L]
 gi|51977154|gb|AAU18704.1| possible alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           cereus E33L]
          Length = 236

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGFIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|56696797|ref|YP_167158.1| hypothetical protein SPO1923 [Ruegeria pomeroyi DSS-3]
 gi|56678534|gb|AAV95200.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 240

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  V+ D++ FYA  GGQ GD+G    DG  + +    K  EG                
Sbjct: 25  DEGGVILDRSLFYATGGGQPGDSGLLRWDGGEMTVATTIKAGEGAIAVLPAEGATPPPIG 84

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             ++  +D++ R      H+A HLL   +       +  +G  I  D  R D    +   
Sbjct: 85  TEVIQELDWERRHAHMRVHTALHLLSVVIP------LEVSGGAIAADKGRLDFNMPEA-- 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             +  ++E  +  +I ++L V    +   +  A+ A     ++   + + RVR+V +  +
Sbjct: 137 PEDKAALEQALQALIERDLAVSEDWITDAELDANPALVKTMSVSPPRGSGRVRLVRIG-Q 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV+ TGEI  + +          RR+ 
Sbjct: 196 GADQVDLQPCGGTHVARTGEIGPVRLGKIEKKGRQNRRVY 235


>gi|73669588|ref|YP_305603.1| Ala-tRNA(Pro) hydrolase [Methanosarcina barkeri str. Fusaro]
 gi|121722150|sp|Q46AR9|ALAXM_METBF RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|72396750|gb|AAZ71023.1| Ala-tRNA(Pro) hydrolase [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 10/238 (4%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKK 549
           +   +++ E   E V+  K  VV D+T FY E+GGQ  DTG  +   DG    +  V+K 
Sbjct: 8   LDCYMKEFEATVEKVTDDKF-VVLDRTVFYPESGGQPSDTGKLVRESDGAEFNVLYVRKF 66

Query: 550 AEGI-FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
              I            L+    +   ID+  R +    H+ATH++ + +    G+ ++  
Sbjct: 67  NGDISHEIDGENVSNGLKAGDKVKGFIDWDRRYRHMRMHTATHVIANVIEKEAGAQIT-- 124

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-L 667
           G+ +  D  R D +  +     +    E   ND+IAQ  PV   +++R++A    +    
Sbjct: 125 GNQLGLDQSRVDFSL-EVFDRDKFAEYEKIANDLIAQKSPVNLYLVSRKEAEEKLSRLTT 183

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           L   ++D ++ V +   +G   +   CGGTHV +T EI  + I+   +     RR+  
Sbjct: 184 LAKGFSDEIKEVRIVEIEG--VTIEACGGTHVKNTEEIKGVKIIKLQNKGKSNRRMYF 239


>gi|295401328|ref|ZP_06811299.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976543|gb|EFG52150.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 238

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
            + +  ++ +++ D+T FY   GGQ  DTG         ++  VQ++  G  VH+  V+ 
Sbjct: 17  AKVIEIKEDKIILDETIFYPTGGGQPHDTGMIKQGNETFKVNKVQRE-NGQIVHY--VDN 73

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                +  + + ID+  R +    HS  H+L   L    G+     G+ I  D  R D  
Sbjct: 74  IEKLKQGPVEILIDWDRRYKFMRYHSLLHVLAGYLYNKFGALA--IGNQIFEDRARIDFQ 131

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             +P+T+ +   IED +N +I ++  V  R ++RE+A      ++          + +V 
Sbjct: 132 FEEPLTNEQFNEIEDEINKLIQEDHQVSIRTVSREEAERIDG-SIKTVINLLPPSIKNVR 190

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               G      CGGTHV  T EI    I    S     +R+E
Sbjct: 191 LVAIGDIDEQACGGTHVKETKEIGPFQISKIKSKGQNKKRLE 232


>gi|312109703|ref|YP_003988019.1| threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y4.1MC1]
 gi|311214804|gb|ADP73408.1| Threonyl/alanyl tRNA synthetase SAD [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
            + +  ++ +++ D+T FY   GGQ  DTG         ++  VQ++  G  VH+  V+ 
Sbjct: 17  AKVIEIKEDKIILDETIFYPTGGGQPHDTGMIKQGNETFKVNKVQRE-NGQIVHY--VDN 73

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                +  + + ID+  R +    HS  H+L   L    G+     G+ I  D  R D  
Sbjct: 74  IEKLKQGPVEILIDWDRRYKFMRYHSLLHVLAGYLYNKFGALA--IGNQIFEDRARIDFQ 131

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             +P+T+ +   IED +N +I ++  V  R ++RE+A      ++          + +V 
Sbjct: 132 FEEPLTNEQFNEIEDEINKLIQEDHQVSIRTVSREEAERIDG-SIKTVINLLPPSIKNVR 190

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               G      CGGTHV  T EI    I    S     +R+E
Sbjct: 191 LVAIGDIDEQACGGTHVKETKEIGPFQISKIKSKGQNKKRLE 232


>gi|330798390|ref|XP_003287236.1| hypothetical protein DICPUDRAFT_151319 [Dictyostelium purpureum]
 gi|325082755|gb|EGC36227.1| hypothetical protein DICPUDRAFT_151319 [Dictyostelium purpureum]
          Length = 183

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/139 (54%), Positives = 92/139 (66%), Gaps = 11/139 (7%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
             FL +F+ N  + LPSSSLIP ND TL+FTN+GMV FKN FT  E+  Y+ VTT QKCV
Sbjct: 2   RKFLNYFETNKRKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTALEESKYKLVTTSQKCV 61

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYIT 128
           RAGG  NDL+NVG T RHHTFFEML            +IQ AW+LLTK+F L + RL I+
Sbjct: 62  RAGGNQNDLENVGYTARHHTFFEML-----------DSIQQAWNLLTKDFGLPKERLAIS 110

Query: 129 VYDEDEEAFKLWKKISGLS 147
           V + DE   KL  ++  LS
Sbjct: 111 VLEGDEGEVKLGFQMIKLS 129



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
              L    +DTG+GLERMATVLQEKT NYDIDLF++LI + ++
Sbjct: 125 MIKLSIPCVDTGLGLERMATVLQEKTTNYDIDLFQNLINSFKE 167


>gi|30261778|ref|NP_844155.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. Ames]
 gi|47527011|ref|YP_018360.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49184612|ref|YP_027864.1| alanyl-tRNA synthetase domain-containing protein [Bacillus
           anthracis str. Sterne]
 gi|65319055|ref|ZP_00392014.1| COG2872: Predicted metal-dependent hydrolases related to
           alanyl-tRNA synthetase HxxxH domain [Bacillus anthracis
           str. A2012]
 gi|165869526|ref|ZP_02214185.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0488]
 gi|167633249|ref|ZP_02391574.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0442]
 gi|167638818|ref|ZP_02397093.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0193]
 gi|170686273|ref|ZP_02877495.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0465]
 gi|170706590|ref|ZP_02897050.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0389]
 gi|177650513|ref|ZP_02933480.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0174]
 gi|190566371|ref|ZP_03019289.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815454|ref|YP_002815463.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str. CDC
           684]
 gi|229600184|ref|YP_002866165.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0248]
 gi|254683275|ref|ZP_05147136.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723858|ref|ZP_05185644.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A1055]
 gi|254734628|ref|ZP_05192340.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741037|ref|ZP_05198725.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Kruger B]
 gi|254755280|ref|ZP_05207314.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Vollum]
 gi|254759817|ref|ZP_05211841.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Australia 94]
 gi|30256006|gb|AAP25641.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Ames]
 gi|47502159|gb|AAT30835.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178539|gb|AAT53915.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           Sterne]
 gi|164714966|gb|EDR20484.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0488]
 gi|167513282|gb|EDR88653.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0193]
 gi|167531287|gb|EDR93965.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0442]
 gi|170128688|gb|EDS97555.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0389]
 gi|170669970|gb|EDT20711.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0465]
 gi|172083657|gb|EDT68717.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0174]
 gi|190562506|gb|EDV16473.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006687|gb|ACP16430.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str. CDC
           684]
 gi|229264592|gb|ACQ46229.1| alanyl-tRNA synthetase domain protein [Bacillus anthracis str.
           A0248]
          Length = 236

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|330913784|ref|XP_003296380.1| hypothetical protein PTT_06374 [Pyrenophora teres f. teres 0-1]
 gi|311331519|gb|EFQ95522.1| hypothetical protein PTT_06374 [Pyrenophora teres f. teres 0-1]
          Length = 446

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 143/387 (36%), Gaps = 35/387 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIV 560
           +A S +   +    +  + E GGQ  D G       +  + +I     +  G+     + 
Sbjct: 62  DATSDKTYLIELADSVLFPEGGGQHTDHGVLTTLKDEQSKEEIPIRSIQRHGLRC--ILF 119

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L     +  T+D+  R  L   H+  HLL   +    G  +   G  +   G    
Sbjct: 120 SPTPLSPGTPVRQTVDFARRWDLMQQHTGQHLLSAVM---DGMDLPTLGWSMGQPGEMNY 176

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           V   +  +  E++ I+ + N  I +++P+       E     G+ +L    Y+    VV 
Sbjct: 177 VELPRKPSDEEIEKIQKDCNAKIRESMPITV-----ETPEGKGSDSL-PDDYDKEKGVVR 230

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
             +   G      C GTH+ ++  I ++ +    S+R    R+    G RA         
Sbjct: 231 --FIKIGDMDYNACCGTHLQNSAHISVILLHHTQSVRGTNCRLFFTAGDRAIKMATEAIN 288

Query: 741 KLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------ 792
            L+++A  L  S    +V   V+ + ++    +    ++KL   +      +I       
Sbjct: 289 GLRTIAVSLSSSSAPADVAAGVQRMGDQVS--ESRKKEKKLLAEIASFEGERIKTQLHSQ 346

Query: 793 DVNFMSHIISEVDSKELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
           +V F       +D   +  V   ++   K + G+++L     +   S+L+    +L+++ 
Sbjct: 347 EVAFSHRTTDGLD--FINMVFFEVKDTVKERGGVVLLCSGEVKTSGSILVFGRPELVEKM 404

Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQS 877
            A        +V+    GGG+    Q 
Sbjct: 405 AA-----KVKEVVSTAKGGGKGEKWQG 426


>gi|15965373|ref|NP_385726.1| hypothetical protein SMc01173 [Sinorhizobium meliloti 1021]
 gi|307308761|ref|ZP_07588457.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti BL225C]
 gi|307317234|ref|ZP_07596675.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti AK83]
 gi|15074553|emb|CAC46199.1| Probable alanyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|306897322|gb|EFN28067.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti AK83]
 gi|306900767|gb|EFN31378.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium meliloti BL225C]
          Length = 249

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 20/250 (8%)

Query: 489 SSIVKAIVQQGEIVEEAVSG-----QKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQ 542
           +  V A+ +    +    +      +   +  DQT FYA +GGQ GDTG     DG R+ 
Sbjct: 2   TGTVTALFRDDFYLSTCEARVTAILEGGGIELDQTCFYATSGGQPGDTGFLEREDGSRID 61

Query: 543 ITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           I + +  A   + VH +     +      LVL ID+  R +L   H+A HLL      + 
Sbjct: 62  IVETRHGANKDVIVHMSADGAPVPAVGEKLVLHIDWPRRYRLMRMHTACHLLS----VVC 117

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
              ++  G+ +  +  R D   S+ I   E   +   +  ++ +N PV  + +  E+  A
Sbjct: 118 PFPIT--GAAVGEEESRVDFDMSETIDKDE---VTAGLMKLVEENHPVYVQWITDEELAA 172

Query: 662 SGAAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +                RV  V   +     S  CGGTHVS T E+  ++I         
Sbjct: 173 NPGIVKSKNVRPPMGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGAIHIAKIEKKGKE 232

Query: 720 IR--RIEAIT 727
            R  RI   T
Sbjct: 233 NRRFRIRFAT 242


>gi|289677328|ref|ZP_06498218.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
          Length = 174

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 6/162 (3%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG+I L  IVSE  + AG+RRIEA+TG  A + L   +++LK  A+ +K ++ N++ ++ 
Sbjct: 1   TGDIALFKIVSEGGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLT 60

Query: 762 EIWEEYR--KLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            + E  R  + QL   + K      D    +   +  V  ++  +   D K L +++D L
Sbjct: 61  AVIERNRLLEKQLEQLQAKAASAAGDDLSSAALDVKGVKVLATRLDGQDGKALLALVDQL 120

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
           + K+   +I+L G   E K  ++  VT+DL  +  A DL + 
Sbjct: 121 KNKLGRAVILL-GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQ 161


>gi|229090738|ref|ZP_04221971.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock3-42]
 gi|300117305|ref|ZP_07055095.1| alanine--tRNA ligase [Bacillus cereus SJ1]
 gi|228692680|gb|EEL46406.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock3-42]
 gi|298725140|gb|EFI65792.1| alanine--tRNA ligase [Bacillus cereus SJ1]
          Length = 236

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|228984858|ref|ZP_04145028.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774808|gb|EEM23204.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 236

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTVINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|196033490|ref|ZP_03100902.1| alanyl-tRNA synthetase domain protein [Bacillus cereus W]
 gi|195993924|gb|EDX57880.1| alanyl-tRNA synthetase domain protein [Bacillus cereus W]
          Length = 236

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGFVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVQNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|115375671|ref|ZP_01462926.1| alanyl-tRNA synthetase, truncated [Stigmatella aurantiaca DW4/3-1]
 gi|115367319|gb|EAU66299.1| alanyl-tRNA synthetase, truncated [Stigmatella aurantiaca DW4/3-1]
          Length = 325

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 127/352 (36%), Gaps = 41/352 (11%)

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSI 585
           + D G   G      + DVQ    G+  H   +  G  +      L   ID   RR    
Sbjct: 1   MADRGVLGG----AVVRDVQVDDAGLVHHVLELSEGGALPEVGAELPGEIDRVRRRLHMA 56

Query: 586 NHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            H+  H+L  AL  +  +H   +  G  +    +  DV   + +        E+ VN +I
Sbjct: 57  LHTGQHMLSRALVDVANAHTVSSRLGETLCTIDVDLDVLDERKV-----AEAEEFVNAVI 111

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             ++ +       E+  A         K  + +RVV ++         + CGGTH + + 
Sbjct: 112 EDDVAIRAFFPTPEELAALPLRR--QPKVTENIRVVQIDG-----FDVSPCGGTHCTRSA 164

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ ++ ++       G  R+    G+RARS L  +   L+ L+       G V   ++++
Sbjct: 165 QVGMIRVLGVER-NKGKGRVLFSAGRRARSELWAEAGTLRGLSRAFTCGPGEVPTSIDKL 223

Query: 764 WEEYRKLQL----------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
             E  + +            H   +L   +E    H+      +  ++     + L+++ 
Sbjct: 224 RRELTEAREALGAARARLAEHTAAELASALEQSPEHR------VVAVVEGASPESLRAIA 277

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
             L  +    +++L G   E    ++   +      F      +  A+  GG
Sbjct: 278 ARLTAR-PEAVVLLAGQGPEGLPVLIARGS---GASFGCGAFLKRLAEAAGG 325


>gi|255261320|ref|ZP_05340662.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255103655|gb|EET46329.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 239

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V DQT FY   GGQ GD+G    D   ++I    K      V        +    +
Sbjct: 25  EGGIVLDQTIFYPTGGGQPGDSGRLTWDEGAIEIATTIKGEGTDIVLVPAEPSALPPEGV 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   +D+  R +    H+A HLL   +       +   G  I  +  R D     P+  
Sbjct: 85  AVKQELDWDRRHRHMRVHTALHLLSVVIP------LPVTGGQIGAEKGRLDFNM--PVAL 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYED 685
                IE+ +N +IA + PV T  ++  +  A+       ++   +    +R+V +  E 
Sbjct: 137 ENKDEIEETLNKLIACDFPVTTESISEVELDANPGLVKTMSVQPPRGTGHIRLVRIG-EG 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             +     CGGTHV+ T EI  + +    +     RR+ 
Sbjct: 196 DNMADLQPCGGTHVAHTIEIGRVRLGKVENKGKQNRRVH 234


>gi|71415943|ref|XP_810020.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874491|gb|EAN88169.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 462

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 133/406 (32%), Gaps = 53/406 (13%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV   +  + E GGQ  D G  +     + + +VQ++ +   +         L     
Sbjct: 57  YNVVLTDSVLFPEGGGQPCDHGTIVYGNEEVPVRNVQRRGDTCVIS----TPCPLEVGEE 112

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D+  R     +HSA HLL   +       +      +T       +     I S 
Sbjct: 113 VEVRVDWPRRFDHMQHHSAQHLLSAVVEKAPQCRLPTVSWSLTHPYSFIVLPTGNKIDSD 172

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVR------------ 677
            +  +E   ND IA+ +PV   +   ++A        +      +  R            
Sbjct: 173 VVAHLEKVCNDAIARAVPVRCDMYPSKEAYEQALREKVEKEDSGEIFRQSRSIPSDVTGP 232

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +  +  EDG       C GTHVS+  ++ ++ ++ + +      ++  +TG R   +   
Sbjct: 233 IRIITVEDG--IDQCTCCGTHVSNLTQLQMIKLLHQETKGD-TLKLFFVTGDRLCRYYGD 289

Query: 738 QDEKLKSLASFL-KVSQGN-VVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              + K L   L  V     V   V+       + +  + L L   K + +  + +    
Sbjct: 290 MYFREKELMKELGGVRPEEFVAAAVKRGKEYADMEKRLKNLTLELMKAESEKLIAEAKAS 349

Query: 790 KIADVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                    + +   +V      ++ DA+++     + +L   S      V        L
Sbjct: 350 LAEGAGGGIVVYRRDDVGGDFFNALRDAIRQACPECLAVLAWGSP-----VATTTAGGAL 404

Query: 848 DRFNAV--------DLARLSAKVLG---GGGGG-------GRPHMA 875
            R            D     A  +     G GG       G+ ++A
Sbjct: 405 GRAKTGQFMVIGPTDRVESLAPSVCMALEGKGGMSKYGYRGKGNLA 450


>gi|239813741|ref|YP_002942651.1| threonyl/alanyl tRNA synthetase SAD [Variovorax paradoxus S110]
 gi|239800318|gb|ACS17385.1| Threonyl/alanyl tRNA synthetase SAD [Variovorax paradoxus S110]
          Length = 249

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 96/234 (41%), Gaps = 26/234 (11%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAE--GIFVHHAIVERGI----- 564
           +V D+T FY   GGQ GDTG   + DG  L I D +K     G      +          
Sbjct: 27  IVLDRTVFYPLGGGQAGDTGVLALADGRELAIADTRKVKNEEGQPTQEVVHVPAPGQAEL 86

Query: 565 ---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L    ++   +D++ R +L   H+A+HLL H +       V  NG  ITPD  R D 
Sbjct: 87  LAALEPGAAVTARLDWERRHRLMRFHTASHLLCHLVP------VPVNGCSITPDYARIDF 140

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVR 677
             + P+    L +    +  ++    P+    +  E+  A+ A     ++   +    VR
Sbjct: 141 HMTDPLDKEALTA---GLARLVEAAHPLTVGAITDEELDANPALVKSMSVQPPRGTGTVR 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            + +  E         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 198 TIRIGGEGEAQIDFQPCGGTHVANTAEIGAVMVTKIEKKSANSRRV--VLGWAA 249


>gi|194887781|ref|XP_001976802.1| GG18657 [Drosophila erecta]
 gi|190648451|gb|EDV45729.1| GG18657 [Drosophila erecta]
          Length = 436

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 146/393 (37%), Gaps = 42/393 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  
Sbjct: 41  FNVICEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GSTAVHFVESPTSFEQDAE 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPIT 628
           ++LT+DYQ R      HS  HL+            +    GS ++       ++    I+
Sbjct: 95  VLLTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVS----YIQLSTPHLIS 150

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYED 685
              L  IE   ND+I +   V   +++ E A     + A   L   +    RVV +E  +
Sbjct: 151 RESLDLIERQANDLIREGREVTVLLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIE 210

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S +C GTHV++  ++  + ++    ++  +  +  + G+R    L    ++ + L
Sbjct: 211 -----SNMCCGTHVTNLSQLQCIKLLYAEKVKTNVL-VHFVVGERVLVKLGEVFQREQQL 264

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
              LK   G  +  V+++ +  +       QL+      +    +    K     F  H 
Sbjct: 265 TQALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKDYATAEAERLEELPKKDRPKYFSLHR 324

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISK------EKKASVLIVVTEDLLDRFNAVD 854
              ++   + + +    +    GI   + +S+        K  +++    +++++     
Sbjct: 325 RDGIEVDFINTFL----RLAPEGIFYFLTVSEGVSAGSGAKGHLVLRGDPEIVEK----- 375

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           L      +L  G G G+    Q    N  + + 
Sbjct: 376 LGPQFVDILE-GKGNGKEGSFQGKINNLARLED 407


>gi|118477205|ref|YP_894356.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Bacillus thuringiensis str. Al Hakam]
 gi|225863631|ref|YP_002749009.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB102]
 gi|229183965|ref|ZP_04311180.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BGSC 6E1]
 gi|118416430|gb|ABK84849.1| Ala-tRNA(Pro) hydrolase [Bacillus thuringiensis str. Al Hakam]
 gi|225787536|gb|ACO27753.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB102]
 gi|228599490|gb|EEK57095.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BGSC 6E1]
          Length = 236

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGKIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  ALVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|229155344|ref|ZP_04283454.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 4342]
 gi|228628059|gb|EEK84776.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 4342]
          Length = 236

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFIKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|159044856|ref|YP_001533650.1| aminoacyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|157912616|gb|ABV94049.1| aminoacyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 239

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 13/218 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V DQT FYA  GGQ GD G    DG  ++I    K   G   H       +     
Sbjct: 25  EGGIVTDQTVFYATGGGQPGDAGRIAWDGGEIEIATAVKLDTGAIAHVPAEAASLPHVGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L L++D+  R +    H+A HLL   +       +   G  ++    R D     P   
Sbjct: 85  GLRLSLDWARRHRHMRIHTALHLLSVVIP------LPVTGGAVSAQKGRLDFDM--PDAP 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYED 685
            +  ++E  +  +I ++LPV    +   + +A        A+     + +VR+V +  E 
Sbjct: 137 EDRDALEAQLATLIERDLPVADEWITEAELLAKPELVKTMAVKPPLVSGQVRLVRIG-EG 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                   CGGTHV+ TGEI  + +          RR+
Sbjct: 196 AETVDLQPCGGTHVARTGEIGRVVLGKIEKKGRQNRRV 233


>gi|330508520|ref|YP_004384948.1| alanyl-tRNA synthetase domain-containing protein [Methanosaeta
           concilii GP-6]
 gi|328929328|gb|AEB69130.1| alanyl-tRNA synthetase domain protein [Methanosaeta concilii GP-6]
          Length = 233

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 11/213 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ ++T FY ++GGQ  D G    D     +  V + +  I +    ++R  L     + 
Sbjct: 28  VILEETAFYPQSGGQPSDLGSLFRDEDEFCVLRV-EPSGPIHI----MDRTGLAPGDRVS 82

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R +   +H+A H+L   +    G+ ++  G+ I     R D +  +    +++
Sbjct: 83  GRIDWDRRYRFMRSHTACHILSSVIFDKTGARIT--GNQIDIARSRVDFSL-EAFDKSKI 139

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
               D  N +I+++  V   ++ R +A+A      L     DR  +  VE E        
Sbjct: 140 AEYVDQANQLISEDHAVRISLLPRAEAMAIPDLVRLAMDVPDREEIRVVEIEGV---DRQ 196

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            CGGTHV  TGEI  + +V   +     RR+  
Sbjct: 197 ACGGTHVGRTGEIKGIKLVKAENKGKANRRVYF 229


>gi|194769724|ref|XP_001966951.1| GF21792 [Drosophila ananassae]
 gi|190622746|gb|EDV38270.1| GF21792 [Drosophila ananassae]
          Length = 451

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 138/393 (35%), Gaps = 42/393 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+ + T  + E GGQ  D G          + +V +K  G    H +           
Sbjct: 41  FNVICEDTILFPEGGGQPCDYGTL----DECPVRNVIRK--GTTAVHFVEAPKTFEIGAE 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVTHSKPIT 628
           +   +D+  R      HS  HL+            +    GS ++       ++    I+
Sbjct: 95  VAQVLDFPRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVS----YIQLSTPHLIS 150

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYED 685
              L  IE   ND+I +   V   +++ E A     + A   L   +    RVV +E  +
Sbjct: 151 RESLDLIETQANDLIREGREVSVVLVDPEVAQEFQDARAPRGLPKDHEGLARVVRIEGIE 210

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
                S +C GTHVS+  ++  + ++    ++  +  +  + G+R    L    ++ + L
Sbjct: 211 -----SNMCCGTHVSNLSQLQCIKLLYAEKVKTNVL-VYFVVGERVLRKLGEVFQREQQL 264

Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVE--DLSCHKIADVNFMSHI 800
              LK      +  V+++ +  +  +    +  K       E  +L   K    +F  H 
Sbjct: 265 TQALKGGPNQHLELVQKLQQNVKGTRKSFQLLLKDFATAEAERLELMPKKERPKHFSIHR 324

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKE------KKASVLIVVTEDLLDRFNAVD 854
              ++   + + +    +    GI   + +S+        K  +++    +L+++     
Sbjct: 325 RDGIEVDFINTFL----RLAPEGIFYFLTVSEGVSAGSSAKGHLVLRGDPELVEKL---- 376

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
                   L  G G G+    Q    N  +  +
Sbjct: 377 --GPEFMDLLEGKGNGKEGSFQGKINNLARLQE 407


>gi|170290362|ref|YP_001737178.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174442|gb|ACB07495.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 234

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 16/235 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
             V   E     V G K  +  D+T F+  +GG   DTG       R  + DV ++ +  
Sbjct: 10  CYVTDFEARVTRVEGNK--LFLDRTAFHPTSGGVANDTGFIESSSGRWNVIDVIEEGD-- 65

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V H +  +  L     +   ID+  R +L   H+A H+L   L    G+ V+  G  I 
Sbjct: 66  -VAHLLDSKPDLSVGDIVRGHIDWDRRYRLMRLHTADHILTAILYKEKGALVT--GGHID 122

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           P+  + D +  +       +     VN+I +  + V    + RE+A+       L  K  
Sbjct: 123 PEYAKSDFSL-ERGEREVFEEAIKKVNEIASSGIEVKIYFLPREEAMKIPGIVKLAAKMP 181

Query: 674 ---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              +++R+V +   D         GG HV +T EI  + ++   +   G +R+  
Sbjct: 182 PTLEKLRIVEIPGID-----IQADGGPHVRNTREIGEVKLLKVENKGKGKKRVYF 231


>gi|196045110|ref|ZP_03112343.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB108]
 gi|196024112|gb|EDX62786.1| alanyl-tRNA synthetase domain protein [Bacillus cereus 03BB108]
          Length = 236

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R +L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHKLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|50288005|ref|XP_446431.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525739|emb|CAG59358.1| unnamed protein product [Candida glabrata]
          Length = 456

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 133/322 (41%), Gaps = 28/322 (8%)

Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD--QTPFYAEAGGQLGDTG 532
           + CQ+ P  L +  ++++  +    +  ++ + G++   V +   T  + E GGQ  DTG
Sbjct: 12  LKCQREPFLLEDFETNVISCVKVDSKTAKKFLIGKEATHVLELEDTILFPEGGGQPSDTG 71

Query: 533 CA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
              + D    +I  V+   EG+   H +     +     + L +D + R      H+  H
Sbjct: 72  YVTLRDDETKRINVVKVVREGLHAKHYV--DQAIEPGSKISLHVDKEKRLDYMQQHTGQH 129

Query: 592 LLHHAL----------STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           LL   L          S  +G   S     + P      +   + ++  E+  I D  N+
Sbjct: 130 LLSAILDNYYDNADTLSWSMGGIPSTKKPILEPSDYLNYLELPRKLSKDEISEITDKFNE 189

Query: 642 IIAQN-LPVVTRI---MNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALC 694
           I++ N +P+  +    + + ++I   +   +   Y+     +R +++     G      C
Sbjct: 190 IVSTNVMPITVKETIAVEKSESIEDVSTKKIPDDYDYTLGVLRTINI-----GELDKNPC 244

Query: 695 GGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            GTH+++T ++  + I+ ++S++R    R+  + G+R   +     + + S    L  S+
Sbjct: 245 CGTHLTATSQVQSILILDNQSTVRGTNSRLYFMCGKRVSLYAKMLTDYISSAKVELSCSE 304

Query: 754 GNVVGRVEEIWEEYRKLQLIHA 775
             +  +V  + E  +K +    
Sbjct: 305 SQISSKVVALKENLQKAKKKEQ 326


>gi|325292579|ref|YP_004278443.1| alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060432|gb|ADY64123.1| alanyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 245

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 18/241 (7%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITD 545
           V A+ +    +  A +      +   +  DQT FYA +GGQ GD+G     DG R+++  
Sbjct: 3   VNALFRDDFYLSTAEAIVTAVHEDGGIELDQTCFYATSGGQPGDSGFLERADGSRIELGT 62

Query: 546 VQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            +  ++   + H  +E          L L +D+  R +L   H+A HLL           
Sbjct: 63  TKNGSDKSVIIHVPLEGQPSPEVGEKLTLHVDWPRRYKLMRMHTACHLLSVVCQ------ 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  D  R D   S+ I   E   +   + +++  N PV  + +  E+  A+  
Sbjct: 117 WPITGAAVGEDESRVDFDMSETIDKDE---VTAKLMELVKANHPVFLQWITDEELQANPG 173

Query: 665 AALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         RV  V   +     S  CGGTHVS T E+  ++I          RR
Sbjct: 174 IVKSKNVRPPIGLGRVSLVCIGENSTIDSQPCGGTHVSETQEVGDIHIAKIEKKGKENRR 233

Query: 723 I 723
            
Sbjct: 234 F 234


>gi|229195986|ref|ZP_04322738.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1293]
 gi|228587368|gb|EEK45434.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1293]
          Length = 236

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  ++ +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEENKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVQKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|296502374|ref|YP_003664074.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
 gi|296323426|gb|ADH06354.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis BMB171]
          Length = 236

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|227822050|ref|YP_002826021.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|227341050|gb|ACP25268.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 249

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 98/251 (39%), Gaps = 18/251 (7%)

Query: 489 SSIVKAIVQQGEIVEEAVSG-----QKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQ 542
           +S V A+ ++   +    +      +   +  DQT FYA +GGQ GDTG     DG R+ 
Sbjct: 2   TSTVTALFREDFYLSTCEASVTAILEDGGIELDQTCFYATSGGQPGDTGFLEREDGSRIA 61

Query: 543 ITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           I + +   ++ + VH     +        LVL ID+  R +L   H+A HLL        
Sbjct: 62  IANTRHGASKDVIVHVPADGQARPAIGEKLVLHIDWPRRYRLMRMHTACHLLSVVCP--- 118

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                  G+ +  +  R D   S+ I   E   +   +  ++  N PV  + +  E+  A
Sbjct: 119 ---YPITGAAVGEEESRVDFDMSETIDKDE---VTAALMKLVEANHPVYVQWITDEELAA 172

Query: 662 SGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +            +   RV  V   +     S  CGGTHVS T E+  ++I         
Sbjct: 173 NPGIVKSKNVRPPSGMGRVSLVCIGESSSIDSQPCGGTHVSETQEVGAIHIAKIEKKGKE 232

Query: 720 IRRIEAITGQR 730
            RR     G  
Sbjct: 233 NRRFRIRFGTA 243


>gi|30019816|ref|NP_831447.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus cereus ATCC 14579]
 gi|228958054|ref|ZP_04119789.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043529|ref|ZP_04191238.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus AH676]
 gi|229127100|ref|ZP_04256097.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-Cer4]
 gi|29895361|gb|AAP08648.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus cereus ATCC 14579]
 gi|228656216|gb|EEL12057.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-Cer4]
 gi|228725751|gb|EEL76999.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus AH676]
 gi|228801571|gb|EEM48453.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 236

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A         A  LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|299561758|gb|ADJ36951.1| alanyl-tRNA synthetase [Conicera dauci]
          Length = 122

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/124 (42%), Positives = 70/124 (56%), Gaps = 10/124 (8%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLW 140
           FFEMLGN+SFG YFK+  I  AW+ LT   +L + RLY+T +        + D E  + W
Sbjct: 1   FFEMLGNWSFGDYFKKEIISWAWEFLTDRLELPKDRLYVTYFGGHPESGLEPDLECRQFW 60

Query: 141 KKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEI 200
             + GL  + II  +  DNFW M ETGPCGPCSE+ FD+           + +    +EI
Sbjct: 61  IDM-GLKEEHIIPGSMKDNFWEMGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEI 118

Query: 201 WNLV 204
           WNLV
Sbjct: 119 WNLV 122


>gi|49480535|ref|YP_035892.1| alanine--tRNA ligase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332091|gb|AAT62737.1| possible alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 236

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  ALVKLGPVKLEVNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL     + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPATIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|195393664|ref|XP_002055473.1| GJ18773 [Drosophila virilis]
 gi|194149983|gb|EDW65674.1| GJ18773 [Drosophila virilis]
          Length = 431

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 137/402 (34%), Gaps = 44/402 (10%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
            EA   + V +V + T  + E GGQ  D G   G      + +V +K       H +   
Sbjct: 35  AEARQLRGVNLVCEDTILFPEGGGQPCDYGTINGQ----PVRNVLRKGSTAI--HFVESS 88

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                   +   +D+  R      HS  HL+            +     +        ++
Sbjct: 89  TCFEEGTEVQQHLDWPRRLDHMQQHSGQHLITALFDREFKYDTTSW--SLGASVSYIQLS 146

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVV 679
               I+   L  IE   ND+I +   V   +++ E A     + A   L   +    RVV
Sbjct: 147 TPHLISRESLDLIERQANDLIREGRAVSVLLVDPEVAQEFQDARAPRGLPKDHEGLARVV 206

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +E  +     S +C GTHV++  ++  + ++    +++ +  +  + G+R    L    
Sbjct: 207 RIEGIE-----SNMCCGTHVTNLSQLQCIKLLYAEKVKSNVL-VYFVVGERVLRKLGEIF 260

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           ++ + L   LK      +  V+++ +  +       ++  Q  ++D +  +   +  +  
Sbjct: 261 KREQQLTVALKGGPQQHLELVQKLHQNVK-----STRKSFQQLLKDFANAEAERLENL-- 313

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT------EDLLDRFNAV 853
                  K ++    AL ++    +  +    +     +   +T           + + V
Sbjct: 314 ------PKAMRPKYFALHRRDGIEVDFINTFLRNAPEEIFYFLTVSESVSSGSGAKGHMV 367

Query: 854 -----DLARLSAK---VLGGGGGGGRPHMAQSGGPNGNKADQ 887
                 L          L  G G G+ +  Q    N +   +
Sbjct: 368 LRGEPTLVEQLGPKFLELLEGKGNGKENNFQGKITNLSGLQE 409


>gi|326319125|ref|YP_004236797.1| threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375961|gb|ADX48230.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 255

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 94/232 (40%), Gaps = 22/232 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQK------KAEGIFVHHAIVERG 563
             +V D+T FY   GGQ GD G  +   G  + I D +K      K     VH       
Sbjct: 35  GGIVLDRTVFYPLGGGQAGDAGVLVRAGGREVPIADTRKAKDAEGKPTAAIVHVPAPGAE 94

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  +   ID++ R +L   H+ THLL H ++         NG  +TPD  R D   
Sbjct: 95  PPAVGEEVTARIDWERRHRLMRFHTTTHLLCHLVAQ------PVNGCSVTPDAARLDFHM 148

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVV 679
             P+ +A L +    +  ++A+  PV    +   +  A        ++   + + +VR V
Sbjct: 149 DGPLDAAALNA---GIARLVAEAHPVTIGAITDAELDAQPDLVKSMSVQPPRGSGQVRTV 205

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
            V  +         CGGTHV++T EI  + +       A  RR+  + G  A
Sbjct: 206 RVGTDGQPRIDLQPCGGTHVANTAEIGAVVVTKIEKKGAMARRV--VLGFAA 255


>gi|206974976|ref|ZP_03235891.1| alanyl-tRNA synthetase domain protein [Bacillus cereus H3081.97]
 gi|217959256|ref|YP_002337804.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH187]
 gi|229138474|ref|ZP_04267063.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST26]
 gi|206746995|gb|EDZ58387.1| alanyl-tRNA synthetase domain protein [Bacillus cereus H3081.97]
 gi|217066743|gb|ACJ80993.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH187]
 gi|228645011|gb|EEL01254.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST26]
          Length = 236

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  ++ +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEENKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVQKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|302886448|ref|XP_003042114.1| hypothetical protein NECHADRAFT_86981 [Nectria haematococca mpVI
           77-13-4]
 gi|256723022|gb|EEU36401.1| hypothetical protein NECHADRAFT_86981 [Nectria haematococca mpVI
           77-13-4]
          Length = 434

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 131/367 (35%), Gaps = 28/367 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIF 554
            +  +EA    +  +    +  + E GGQ  D G        D   + I +VQ+      
Sbjct: 46  KKKKQEAAPQDEWLIECADSVLFPEGGGQPSDHGTITLLSGSDQTPISIKNVQRHGLRCV 105

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           ++        L     +   +D+  R      H+  HLL   +    G      G  +  
Sbjct: 106 IY----SPQPLSPGDKIRQEVDWARRWDHMQQHTGQHLLSAIMMNDHGLKTLGWG--MGA 159

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
            G    V   +  T  E++SI+   +++I  NL +       +DA           K   
Sbjct: 160 AGTMNYVDIPRKPTEEEMQSIQSRCSELIRDNLSIKVE--TPDDAKHEKLPGDY-DKSEG 216

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            VRV+ +     G      C GTH+S T  + L+ + S  S+     R+  +TG RA S 
Sbjct: 217 VVRVIHI-----GDIDINTCCGTHLSQTSHVSLVILGSTQSVHGKNCRLSFMTGDRAVSL 271

Query: 735 LMGQDEKLKSLASFLKVS--QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
                  + S+A  +  S     V+ +   + +   +L+ +  K  L++   +       
Sbjct: 272 ANASVGAVGSIAKLMSSSSVPTEVLAKTSTMCDTVTELRRVERKLMLEIAKYESDRVNAV 331

Query: 793 DVNFMSHIISEVD--SKELKSVMDALQKKIQS-GIIMLVGISKEKKASVLIVVTE----- 844
                +  +   D     +  ++   ++  Q  G +++  I + K    +++V +     
Sbjct: 332 IRGGKNAYVYRSDGGMDFINKIVGETKEAAQGTGHVVVFAIGESKSTGPVVIVGDKEAVE 391

Query: 845 DLLDRFN 851
           D+  +  
Sbjct: 392 DMATKVK 398


>gi|13541032|ref|NP_110720.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Thermoplasma volcanium GSS1]
 gi|14324415|dbj|BAB59343.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 242

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 7/229 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     +  ++  ++ D+T FY   GGQ  DTG     G   ++ DV K  +G  V H 
Sbjct: 13  KEFDGNVIEVKENRLILDRTAFYPTGGGQPNDTGVIFCCGKEYRVNDVTK--DGDEVIHV 70

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           + +   L     +  TID+  R      H+A H++   ++ + GS     G  I  D  R
Sbjct: 71  VDDSTGLSAGAKVHGTIDWDRRYAHMRYHTAIHVIDGVVNVMHGSEALLTGGQIYEDRAR 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG--AAALLGTKYNDRV 676
            D+   +  T   +  I +  N  + +   V   I+ +E+AI     A    G K  + +
Sbjct: 131 IDMNI-ENFTKEFVDKIIEESNSFMKEGHRVYPDILTKEEAIKRPNLARTEPGRKLIETL 189

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             V +   +G        GGTHVS+T E+  +++    +     +RIE 
Sbjct: 190 PEVRIIVIEG--LDEQSDGGTHVSNTKEVGTIFVRKIENKGKRNKRIEF 236


>gi|228907407|ref|ZP_04071265.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           200]
 gi|228852268|gb|EEM97064.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           200]
          Length = 236

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ E I   H I +  
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKEQEEIV--HYIKDEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + T  M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTCYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|228952156|ref|ZP_04114248.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807510|gb|EEM54037.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 236

 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIRVEGNKVFVKETIFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|324325791|gb|ADY21051.1| alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 236

 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|228920483|ref|ZP_04083828.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229069324|ref|ZP_04202614.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus F65185]
 gi|229078955|ref|ZP_04211507.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock4-2]
 gi|229109229|ref|ZP_04238828.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock1-15]
 gi|229178181|ref|ZP_04305552.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 172560W]
 gi|228605311|gb|EEK62761.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 172560W]
 gi|228674239|gb|EEL29484.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock1-15]
 gi|228704369|gb|EEL56803.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus Rock4-2]
 gi|228713811|gb|EEL65696.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus F65185]
 gi|228839113|gb|EEM84409.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 236

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|229189871|ref|ZP_04316881.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10876]
 gi|228593545|gb|EEK51354.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10876]
          Length = 236

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIRVEGNKVFVKETIFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|312214473|emb|CBX94464.1| similar to alanyl-tRNA synthetase domain-containing protein 1
           [Leptosphaeria maculans]
          Length = 450

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 148/390 (37%), Gaps = 29/390 (7%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIF 554
            +G  V  + + +   + F  +  + E GGQ  D G    + D    +++    +  G+ 
Sbjct: 58  TKGLTVGASNAPKVWHIEFADSVLFPEGGGQHTDHGTITPLNDDSDKEVSITNIQRHGLR 117

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
             H       L+   ++  T+D+  R  L   H+  HLL   +    G ++   G  +  
Sbjct: 118 CVH--FSPRPLKPGTTVRQTVDFGRRWDLMQQHTGQHLLSAIM---DGMNLETLGWSMGQ 172

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
            G    V   +  T  E++ I+   N I+ +N+ +       E     G+++L    Y+ 
Sbjct: 173 PGEMNYVELPRKPTDEEIRIIQRTCNKIVRENVSITV-----ETPEGRGSSSL-PEDYDS 226

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              VV   +   G      C GTH+ +T  I L+ +    ++R    R+    G RA   
Sbjct: 227 DKGVVR--FVKIGDLDYNACCGTHLRTTSHIGLILLHHMQTVRGTNCRLFFSAGDRAIEL 284

Query: 735 LMGQDEKLKSLASFLKVS--QGNVVGRVEEI---WEEYRKLQLIHAKRKLQLNVEDLSCH 789
                  L+S+A  L  S    +V   V+ +     E RK +        +     ++ H
Sbjct: 285 ATESINGLRSIALSLSTSAAPNDVAIGVKRLGDSLSESRKKEKKMLAEISKFESARITTH 344

Query: 790 -KIADVNFMSHIISEVDSKELKSVMDALQK-KIQSGIIMLVGISKEKKASVLIVVTEDLL 847
            +     F+      +D   +  V+  ++    + G+ +L     +   S++I+   +L+
Sbjct: 345 FQKHQSAFLHRATDGLD--FINLVVMEIKDVASERGVAVLCSGEAKSSGSIVILGQPELV 402

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                 +++    +V+    GGG+    Q 
Sbjct: 403 Q-----NMSSKVKEVVITAKGGGKGAKWQG 427


>gi|47565442|ref|ZP_00236483.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557432|gb|EAL15759.1| alanyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 236

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 107/229 (46%), Gaps = 16/229 (6%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  + K  +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKI-KNEQGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEGIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           V++E  D        CGGTHV +T EI  L I    S     RR E   
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFEVRA 235


>gi|289423549|ref|ZP_06425350.1| threonyl/alanyl tRNA synthetase, SAD [Peptostreptococcus anaerobius
           653-L]
 gi|289156051|gb|EFD04715.1| threonyl/alanyl tRNA synthetase, SAD [Peptostreptococcus anaerobius
           653-L]
          Length = 424

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 158/390 (40%), Gaps = 35/390 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRL----------QITDVQKKA--EGIFV 555
           + +E+ F+ T F+   GGQ  D G   +  G  +          ++ +  K        +
Sbjct: 26  ELLELEFEDTIFFPGGGGQPMDRGFISLVSGGEVKHRYKLEDIREVDNRIKHIVSRDQVL 85

Query: 556 HHAIVERGILRTEM-SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
               +    + +     ++ +D+ +R      H+  HLL      +  ++    G  I  
Sbjct: 86  STYEISSDKISSGDIECLMELDWDHRIDGMQQHTGQHLLSGCFYKLFKANT--KGLHIGK 143

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D  + D+      T   +K +ED  ND I++ + +   ++   D++       L +   D
Sbjct: 144 DVSQLDI--DGEFTDEMVKKLEDYANDQISRAINIKNYVLKEGDSLE--TRRPLPSTDGD 199

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              +  +E ED  ++    C G H+ +T +I ++ I      ++G  R E + G+RA  +
Sbjct: 200 ---IRILEIEDLDIN---ACCGLHLDNTRDITMVKIKRYYKHKSG-TRFEYLAGKRAVDY 252

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KI 791
           L+ +D    S+ +     + N++  +E I ++        A    +L  +D+  +     
Sbjct: 253 LLKRDRIFDSVLNKYSAGEDNIIKSLENIEKKKDDYYSRSAYLLNELIKKDMEIYLSSAK 312

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR 849
           ++   +  IIS+ D++E    +D+L K +     ++++    K+ K  +  + ++  +  
Sbjct: 313 SNAKGLKVIISKFDNEE-TWYLDSLAKHLVESGPLVLIFANKKQGKYMINFMASKTTISE 371

Query: 850 FNAVDLARLSAKVLGGG--GGGGRPHMAQS 877
              +DL +L   +       GGG    A  
Sbjct: 372 HTYIDLGKLFKSLANEYPLKGGGSKFSASG 401


>gi|218896708|ref|YP_002445119.1| alanyl-tRNA synthetase domain protein [Bacillus cereus G9842]
 gi|228964758|ref|ZP_04125865.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218544569|gb|ACK96963.1| alanyl-tRNA synthetase domain protein [Bacillus cereus G9842]
 gi|228795008|gb|EEM42507.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 236

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|75761803|ref|ZP_00741737.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228900357|ref|ZP_04064586.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           4222]
 gi|74490715|gb|EAO53997.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228859244|gb|EEN03675.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis IBL
           4222]
          Length = 236

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEAVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|86357404|ref|YP_469296.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
 gi|86281506|gb|ABC90569.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 253

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 23/255 (9%)

Query: 492 VKAIVQQG------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT 544
           V A+ +        E V  AV      +  +QT FYA +GGQ GDTG     DG ++ + 
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHDDGG-IELNQTCFYATSGGQPGDTGQLERADGTKIALG 61

Query: 545 DVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             +  A    + H  +E         +LVL +D+  R +L   H+A HLL    S     
Sbjct: 62  QTKHGAGKDVIIHVPLENEPRPEVGETLVLHVDWPRRYRLMRMHTACHLLSVICS----- 116

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D   S+ I   E   +   + +++ QN PV  + +  ++  A+ 
Sbjct: 117 -YPITGAAVGEEESRVDFDMSETIDKDE---VTAKLMELVGQNHPVYQQWITDDELAANP 172

Query: 664 AAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                          RV  V   +     S  CGGTHVS T E+  ++I          R
Sbjct: 173 DIVKSKNVRPPVGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENR 232

Query: 722 --RIEAIT-GQRARS 733
             RI   T G+ AR 
Sbjct: 233 RFRIRFGTPGEEARQ 247


>gi|42780865|ref|NP_978112.1| alanyl-tRNA synthetase domain-containing protein [Bacillus cereus
           ATCC 10987]
 gi|42736786|gb|AAS40720.1| alanyl-tRNA synthetase domain protein [Bacillus cereus ATCC 10987]
          Length = 236

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVYVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVNLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTNEIGTLVIDKVKSKGKQNRRFE 232


>gi|6324288|ref|NP_014358.1| hypothetical protein YNL040W [Saccharomyces cerevisiae S288c]
 gi|1730724|sp|P53960|YNE0_YEAST RecName: Full=Putative alanyl-tRNA editing protein alaX;
           Short=AlaX; Short=AlaXp; Short=AlaXp-II; AltName:
           Full=Alanyl-tRNA deacylase alaX
 gi|1301892|emb|CAA95907.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814611|tpg|DAA10505.1| TPA: hypothetical protein YNL040W [Saccharomyces cerevisiae S288c]
          Length = 456

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 146/382 (38%), Gaps = 39/382 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +  E+    T  + E GGQ  D+G               +I        G+   H + + 
Sbjct: 43  EGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAKHHVNDY 102

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCIT 613
             +    ++ + +D Q R      H+  HLL   L            +G  +++    + 
Sbjct: 103 --IEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPVLE 160

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLGTK 671
           P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + +   
Sbjct: 161 PSDYFNYIELNRKLTLDEITNVSDEINQLI-INFPQEIIVEERIGEETVDEVSTSKIPDD 219

Query: 672 Y---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRAGIRRIEAIT 727
           Y      +R + +     G   S  C GTH+  T +I  + I+S +S++R    R+  + 
Sbjct: 220 YDLSKGVLRTIHI-----GDIDSNPCCGTHLKCTSQIGSILILSNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DLSCHKIADVNFMSHIIS------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +L     A     ++ +       E+  +  K V + L+   +   I+L G  ++     
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCGYERQTNTGS 394

Query: 839 LIVVTEDLLDRFN-AVDLARLS 859
           L++++E      N A +L  + 
Sbjct: 395 LLILSESGEKIANLAANLGSIL 416


>gi|206970665|ref|ZP_03231617.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH1134]
 gi|206734301|gb|EDZ51471.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH1134]
          Length = 236

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIRVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEINWERRHNLMCHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A  +         LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|126726809|ref|ZP_01742648.1| hypothetical protein RB2150_02814 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703767|gb|EBA02861.1| hypothetical protein RB2150_02814 [Rhodobacterales bacterium
           HTCC2150]
          Length = 239

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 86/226 (38%), Gaps = 13/226 (5%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           E A    +  VV   + FY   GGQ GD G       R+++    K   G  V    +  
Sbjct: 18  EVAEITTEGGVVLKDSIFYPTGGGQPGDNGYLTWGDNRMEVATTIKGEGGAIVLLPPMAG 77

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      +   +D+  R  L   H+A HLL   +       +   G  I  +  R D  
Sbjct: 78  SLPPVGTKVTQILDWPRRHALMQMHTALHLLSVVIP------LPVTGGAIGAEKSRLDFD 131

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRV 678
              P    +   + D++N +I Q+L V    ++  +  A+       ++   +   ++R+
Sbjct: 132 M--PDAPEDKNRVLDDLNALIDQDLLVSDSWISEAELDANPSLVKTMSVAPPRGRGKIRM 189

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V +  E   +     CGGTHV  TGEI  L I          RR+ 
Sbjct: 190 VQIG-EGDQIVDYQPCGGTHVLRTGEIGTLRIGKIEKKGQRNRRVY 234


>gi|124028073|ref|YP_001013393.1| metal-dependent hydrolase [Hyperthermus butylicus DSM 5456]
 gi|123978767|gb|ABM81048.1| predicted metal-dependent hydrolase [Hyperthermus butylicus DSM
           5456]
          Length = 241

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 15/236 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAI-GDGIRLQITDVQKKAEG 552
            +++ + +   V G    V  + T F+   +GG   D G  I  DG  L++ DV  + EG
Sbjct: 12  YLKEFDAIVTRVEGN--AVFLEATAFHPRPSGGLDADHGILILPDGSELRVVDVVMR-EG 68

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
              H    +   L   M +   ID++ R Q+   H+A+H+L   L    G+ V+  G  I
Sbjct: 69  DVAHIVDGDLSKLHPGMRVHGVIDWERRYQMMKLHTASHILLAVLYNKYGARVT--GGHI 126

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           TP+  R D+  +     + ++   +  N II + + V    + RE+A+       L  K 
Sbjct: 127 TPETARDDLEINVDDWKSAVRQAVEEANQIIRRCIEVKVYWLPREEALRIPGIVKLADKL 186

Query: 673 N---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
               +++R+V +   D         GG HV +T EI  + IV   S     +R+  
Sbjct: 187 PPDVEKLRIVEIPGVD-----IQADGGPHVRNTCEIPGIKIVKLESRGRRRKRVYY 237


>gi|150396580|ref|YP_001327047.1| threonyl/alanyl tRNA synthetase SAD [Sinorhizobium medicae WSM419]
 gi|150028095|gb|ABR60212.1| Threonyl/alanyl tRNA synthetase SAD [Sinorhizobium medicae WSM419]
          Length = 249

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 99/256 (38%), Gaps = 25/256 (9%)

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
            R V          +   + V AI++ G             +  DQT FYA +GGQ GD 
Sbjct: 2   TRSVTALFREDFYLSTCEASVTAILEDG------------GIELDQTCFYATSGGQPGDK 49

Query: 532 GCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSA 589
           G     DG R+ I D +  A    + H   E   +      LVL ID+  R +L   H+A
Sbjct: 50  GFLEREDGSRIDIIDTRHGATKDIILHIPAEGARMPDVGEKLVLHIDWPRRYRLMRMHTA 109

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            HLL      +    ++  G+ +  +  R D   S+ I   +   +   +  ++ +N PV
Sbjct: 110 CHLLS----VVCPFPIT--GAAVGEEESRVDFDMSELIDKDQ---VTAALMKLVHENHPV 160

Query: 650 VTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
             + +  E+  A+ A              RV  V   +     S  CGGTHVS T E+  
Sbjct: 161 YVQWITDEELAANPAIVKSKNVRPPMGLGRVSLVCIGENSSVDSQPCGGTHVSETQEVGA 220

Query: 708 LYIVSESSIRAGIRRI 723
           ++I          RR 
Sbjct: 221 IHIAKIEKKGKENRRF 236


>gi|209964464|ref|YP_002297379.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
 gi|209957930|gb|ACI98566.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW]
          Length = 244

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 20/222 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA------EGIFVHHAIVERGILR 566
           V  D+T FY   GGQ GD+G    +G  L+I D +K            +H        L 
Sbjct: 26  VRLDRTLFYPAGGGQPGDSGTLTWEGGTLRIADTRKAGEAAPLSGDDVLHIPEDAAAPLP 85

Query: 567 -TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + L ID++ R +    H+  HLL   +        S  G  +  D  R D     
Sbjct: 86  APGTPVTLEIDWERRHRHMRMHTTLHLLCAVVPG------SVTGGQVGADRSRLDFDV-- 137

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSV 681
           P  S +   IE  +N +IA + PV  RI++  +           ++   +    +R++ +
Sbjct: 138 PSGSLDKAEIEGALNALIAADHPVTERIVDDAELDRRPDLVRTLSVQPPRGGGLLRLLLI 197

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             ++  V     CGGTHV+ TGEI  + +V   +     RRI
Sbjct: 198 GTDEAPVD-LQPCGGTHVARTGEIGPVSVVKIENKGRQNRRI 238


>gi|15888552|ref|NP_354233.1| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|15156264|gb|AAK87018.1| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 245

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 18/241 (7%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITD 545
           V A+ +    +  A +      +   +  DQT FYA +GGQ GD+G     DG R+++  
Sbjct: 3   VNALFRDDFYLSTAEAIVTAVHEDGGIELDQTCFYATSGGQPGDSGFLERADGSRIELGV 62

Query: 546 VQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            +  A+   + H  +E          L L +D+  R +L   H+A HLL           
Sbjct: 63  TKNGADKSVIVHVPLEGQPSPEIGEKLTLHVDWPRRYKLMRMHTACHLLSVVCQ------ 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  D  R D   S+ I   E   +   + +++  N PV  + ++ E+  A+  
Sbjct: 117 WPITGAAVGEDESRVDFDMSETIEKDE---VTAKLMELVKANHPVFLQWISDEELQANPG 173

Query: 665 AALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         RV  V   +     S  CGGTHVS T E+  ++I          RR
Sbjct: 174 IVKSKNVRPPMGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGDIHIAKIEKKGKENRR 233

Query: 723 I 723
            
Sbjct: 234 F 234


>gi|218902887|ref|YP_002450721.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH820]
 gi|228914351|ref|ZP_04077966.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228933057|ref|ZP_04095920.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229121325|ref|ZP_04250556.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 95/8201]
 gi|218539979|gb|ACK92377.1| alanyl-tRNA synthetase domain protein [Bacillus cereus AH820]
 gi|228662170|gb|EEL17779.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus 95/8201]
 gi|228826658|gb|EEM72429.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228845345|gb|EEM90381.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 236

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A         A  LL     + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPATIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|84517105|ref|ZP_01004461.1| hypothetical protein SKA53_03594 [Loktanella vestfoldensis SKA53]
 gi|84509000|gb|EAQ05461.1| hypothetical protein SKA53_03594 [Loktanella vestfoldensis SKA53]
          Length = 238

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 91/231 (39%), Gaps = 16/231 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G +++    G    +V D   FY  AGGQ GD+G     G  L I    K      +  
Sbjct: 16  EGRVLDITSEG---GIVLDACLFYPTAGGQPGDSGSLSWQGTTLDIATAVKGEGDSIILL 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 +     SL+  +++  R +    H+A HLL   +       +  +G  I  D  
Sbjct: 73  PAEPAPLPSVGQSLLQKLNWDRRYRHMRVHTALHLLSVVIP------LPVSGGAIATDKG 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYN 673
           R D     P    + +++ED +N +IA N+ V    +   D  A        ++   + +
Sbjct: 127 RLDFDM--PDAPEDKEALEDALNRLIACNMAVTEEWITEADLDAQPDLVKTMSVQPPRGS 184

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            R+R+V +            CGGTHV++T EI  + I          RR+ 
Sbjct: 185 GRIRLVRIGIG-AETADLQPCGGTHVANTSEIGPVRIGKIEKKGRQNRRVY 234


>gi|228926809|ref|ZP_04089877.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832922|gb|EEM78491.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 236

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL     + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPATIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T E+  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEVGTLVIDKVKSKGKQNRRFE 232


>gi|167950026|ref|ZP_02537100.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 139

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 89/123 (72%), Gaps = 1/123 (0%)

Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC 330
           + RVI DH+RS +FL+ DG++P+NEGRG+VLRRI+RRA+ +  +LG        L+  LC
Sbjct: 11  SLRVIADHIRSCAFLVVDGVIPSNEGRGFVLRRIIRRAIRHGYMLGQKGAFFYRLVGPLC 70

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390
            EMG++YPEL+ A+ L+E  L+ E+ERF +TL++G+ +L+ V++ L + + + G   FKL
Sbjct: 71  DEMGASYPELLSARALVERVLKQEEERFAETLEQGMRILEEVIAGL-EGKQIPGATVFKL 129

Query: 391 YDT 393
           YDT
Sbjct: 130 YDT 132


>gi|320100428|ref|YP_004176020.1| Ala-tRNA(Pro) hydrolase [Desulfurococcus mucosus DSM 2162]
 gi|319752780|gb|ADV64538.1| Ala-tRNA(Pro) hydrolase [Desulfurococcus mucosus DSM 2162]
          Length = 238

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
            +++ + V EAV G K  V  D+T F+  +GG   DTG  I   +R+++ +V    E   
Sbjct: 11  YIKECDAVVEAVQGNK--VFLDRTVFHPRSGGVENDTGFIIAGDVRVRVLNVYYDKETGD 68

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           V H + +   +     + L +D+  R +L   H+A H+L   +    G+ ++  G  ITP
Sbjct: 69  VAHEVDDASSITIGSRVKLLLDWDRRYRLMRLHTAAHVLSAVMYMDHGALIT--GGNITP 126

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN- 673
           +    D +  +  +S   +      N+I+A+N+ V    + RE+A+       L  +   
Sbjct: 127 EYGYDDYSL-QTFSSGVFEEAVRKANEIVARNIEVKVYWLPREEAMRIPGVVKLAGRMPP 185

Query: 674 --DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             +++R+V +   D         GG HV  T EI ++ ++   +     +R+  
Sbjct: 186 NVEKLRIVEIPGVD-----IQADGGPHVRHTSEIGVIKLLRTENKGKNKKRLYF 234


>gi|221211703|ref|ZP_03584682.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD1]
 gi|221169064|gb|EEE01532.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD1]
          Length = 243

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A +   E + EAV      +  D+T FY   GGQ GD G   + DG  + I D +K K +
Sbjct: 11  AYLAHCEAIVEAVGDDG--IRLDRTVFYPLGGGQAGDAGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     ++ TID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQDADVAALAPGTRVIATIDWARRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             + +G  +T D +R D   S  I   +   +E  + +++    PV T  +  E+  A  
Sbjct: 124 -YAVDGCSVTADYVRLDFATSDAIDRDD---VERRLAELVRGAHPVTTEWITDEEMAARP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ ++  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIDGVDL-----QPCGGTHVRNTSEIGALRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|327193146|gb|EGE60056.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 319

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 20/242 (8%)

Query: 492 VKAIVQQG------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT 544
           V A+ +        E V  A+      +  DQT FYA +GGQ GDTG     DG ++ + 
Sbjct: 77  VNALYRDDFYLSTCEAVVTAIHDDGG-IELDQTCFYAASGGQPGDTGQLERADGSKIALG 135

Query: 545 DVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             +   ++ I +H  +          +LVL +D+  R +L   H+A HLL    S     
Sbjct: 136 QTKHGASKDIIIHVPLENEPQPEIGETLVLHVDWPRRYRLMRMHTACHLLSVVCS----- 190

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D   S+ I   E   +   + +++ QN PV  + +  ++  A+ 
Sbjct: 191 -YPITGAAVGEEESRIDFDMSETIDKDE---VTARLMELVGQNHPVYLQWITDDELAANP 246

Query: 664 AAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                          RV  V         S  CGGTHVS T E+  ++I          R
Sbjct: 247 DIVKSKNVRPPMGLGRVSLVCIGKNSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENR 306

Query: 722 RI 723
           R 
Sbjct: 307 RF 308


>gi|172056520|ref|YP_001812980.1| threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sibiricum
           255-15]
 gi|171989041|gb|ACB59963.1| Threonyl/alanyl tRNA synthetase SAD [Exiguobacterium sibiricum
           255-15]
          Length = 383

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 142/377 (37%), Gaps = 30/377 (7%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           IV      Q   V  +Q+ FY E+GGQ  D G   G    + + DVQ +   ++    ++
Sbjct: 16  IVTGTKEEQGYWVRLEQSYFYPESGGQPADRGTLNG----VSVLDVQLQEGDVWH---LL 68

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +  +L  E  +   +D   R   +  H+A H++   L            +      L  D
Sbjct: 69  DSPLL--ENEVQGEVDDVIRTDHAAQHTAQHVISAILQDEFQIKTVSFRTGTEESTLDLD 126

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680
           +        +    +E+ +  +I  NL +       E+A+          +  +++RVV 
Sbjct: 127 LGDWDETLQS---RLEERLRTVIQANLLITATEYTEEEALQLPLRKT--PQVTEKIRVVQ 181

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G    + CGGTH++ST E+ L+       +R  I R+  +   RA   L  +  
Sbjct: 182 I-----GELDYSACGGTHLASTSELELILFTGLEKVRGNI-RLAYVAKDRAFRLLTTERR 235

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L   A  +   +  V   VE++ +E  +L     + +       L      D   ++  
Sbjct: 236 VLTETARAVSAKKNQVHLVVEDLKQEQVRLNRQIGQAEDLHVKTVLKQLLATDEPVLTVR 295

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
             + D +  + ++ AL +  ++G +     ++  K   +           +    A+   
Sbjct: 296 HDQEDVRFSEKLLKALAETGRTGFV----WNENAKKLFMCSAGS-----IHLGKFAKTHL 346

Query: 861 KVLGGGGGGGRPHMAQS 877
           K    G GGG  + AQ+
Sbjct: 347 KQFN-GRGGGSENNAQA 362


>gi|242398217|ref|YP_002993641.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
 gi|242264610|gb|ACS89292.1| Alanyl-tRNA synthetase-related protein [Thermococcus sibiricus MM
           739]
          Length = 213

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 93/227 (40%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  ++  ++ +QT FY   GGQ  DTG   G    +++ DV K  E    H  
Sbjct: 13  KEATAKVLQIKENALLLNQTIFYPTGGGQPHDTGTING----VKVLDVYKDEEENIWH-V 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS-QNGSCITPDGL 617
           +    + R    + L +D+  R +L   H+A HLL H L  +LG      +GS + P+  
Sbjct: 68  VENPEMFRVGDEVELKLDWDRRYKLMRIHTAMHLLDHILYEVLGKGTWEPHGSGMNPEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + I   + K IE   N  + +   V                   G K   ++R
Sbjct: 128 RYDIRYPENINQHKEKIIE-LFNRYVDEGGEVKVWW--------------EGKKRLTQIR 172

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                           CGGTHV    EI  L  +  SSI  G +RIE
Sbjct: 173 ----------DFEILPCGGTHVKDIKEIGHLKKLKRSSIGKGAQRIE 209


>gi|221199625|ref|ZP_03572669.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2M]
 gi|221205475|ref|ZP_03578490.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2]
 gi|221174313|gb|EEE06745.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2]
 gi|221180910|gb|EEE13313.1| alanyl-transfer RNA synthetase [Burkholderia multivorans CGD2M]
          Length = 243

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A +   E + EAV      +  D+T FY   GGQ GD G   + DG  + I D +K K +
Sbjct: 11  AYLAHCEAIVEAVGDDG--IRLDRTVFYPLGGGQAGDAGTLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V TID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQDAHVAALAPGTRVVATIDWVRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             + +G  +T D +R D   S  I   +   +E  + +++    PV T  +  E+  A  
Sbjct: 124 -YAVDGCSVTADYVRLDFATSDAIDRDD---VERRLAELVRGAHPVTTEWITDEEMAARP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ ++  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIDGVDL-----QPCGGTHVRNTSEIGALRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|254440251|ref|ZP_05053745.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Octadecabacter antarcticus 307]
 gi|198255697|gb|EDY80011.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Octadecabacter antarcticus 307]
          Length = 239

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  ++ D + FYA +GGQ GD+G     G  + I    K   G  +        +    
Sbjct: 24  DEGGIILDASIFYATSGGQPGDSGTLTWQGGAIDIATSVKGEGGTIILVPAEPNPLPAIG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  +++++ R +    H+A HLL   +       +   G  I P+  R D      I 
Sbjct: 84  TIVKQSLNWERRHRHMRVHTALHLLSVVIP------LPVTGGSIGPEKGRLDFDMPDAI- 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             +  ++E+ +N +I  +  + T  ++  +  A+       ++   K   R+R+V +   
Sbjct: 137 -EDKAALENTLNKLIDCDFDISTEWISESELAANPELVKTMSVAPPKGAGRIRMVRIGAG 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +        CGGTHV  T EI  + +          RR+ 
Sbjct: 196 EN-TADYQPCGGTHVRHTSEIGRVRLGKVEKKGKLNRRVY 234


>gi|207341652|gb|EDZ69645.1| YNL040Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 456

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 146/382 (38%), Gaps = 39/382 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +  E+    T  + E GGQ  D+G               +I        G+   H + + 
Sbjct: 43  EGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAKHHLNDY 102

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCIT 613
             +    ++ + +D Q R      H+  HLL   L            +G  +++    + 
Sbjct: 103 --IEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPVLE 160

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLGTK 671
           P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + +   
Sbjct: 161 PSDYFNYIELNRKLTLDEITNVSDEINQLI-INFPQEIIVEERIGEETVDEVSTSKIPDD 219

Query: 672 Y---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRAGIRRIEAIT 727
           Y      +R + +     G   S  C GTH+  T +I  + I+S +S++R    R+  + 
Sbjct: 220 YDLSKGVLRTIHI-----GDIDSNPCCGTHLKCTSQIGSILILSNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DLSCHKIADVNFMSHIIS------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +L     A     ++ +       E+  +  K V + L+   +   I+L G  ++     
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCGYERQTNTGS 394

Query: 839 LIVVTEDLLDRFN-AVDLARLS 859
           L++++E      N A +L  + 
Sbjct: 395 LLILSESGEKIANLAANLGSIL 416


>gi|218231311|ref|YP_002366458.1| alanyl-tRNA synthetase domain protein [Bacillus cereus B4264]
 gi|218159268|gb|ACK59260.1| alanyl-tRNA synthetase domain protein [Bacillus cereus B4264]
          Length = 236

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEMNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A         A  LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|254240533|ref|ZP_04933855.1| hypothetical protein PA2G_01189 [Pseudomonas aeruginosa 2192]
 gi|126193911|gb|EAZ57974.1| hypothetical protein PA2G_01189 [Pseudomonas aeruginosa 2192]
          Length = 244

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 28/230 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-----KAEGIFVHHAIVERGI-- 564
           ++ DQT FY + GGQ GD+G   + DG RL+I D +K           +H     +    
Sbjct: 29  LLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDAILHIPAEGQATVL 88

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             ++    ++  ID+  R +    H+A H+L   L          NG  IT +  R D  
Sbjct: 89  RAMKPGEVVLAQIDWVRRYRHMRLHTAAHMLCAVLP------YPVNGCSITDEHARLDFV 142

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRV 678
            S+P++     +I+  +  ++    PV    M+ +   A        ++       +VR+
Sbjct: 143 TSEPLSRE---AIDSALAAMVEAAHPVSIDTMSDDALRARPDLVRTMSVQPPMGAGQVRL 199

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           VS++  D        CGGTHV++T E+ ++ +       A  RR+  + G
Sbjct: 200 VSIKDTDL-----QPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVLVLG 244


>gi|49082120|gb|AAT50460.1| PA2106 [synthetic construct]
          Length = 245

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 28/230 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-----KAEGIFVHHAIVERGI-- 564
           ++ DQT FY + GGQ GD+G   + DG RL+I D +K           +H     +    
Sbjct: 29  LLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDAILHIPAEGQATVL 88

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             ++    ++  ID+  R +    H+A H+L   L          NG  IT +  R D  
Sbjct: 89  RAMKPGEVVLAQIDWVRRYRHMRLHTAAHMLCAVLP------YPVNGCSITDEHARLDFV 142

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRV 678
            S+P++     +I+  +  ++    PV    M+ +   A        ++       +VR+
Sbjct: 143 TSEPLSRE---AIDSALAAMVEAAHPVSIDTMSDDALRARPDLVRTMSVQPPMGAGQVRL 199

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           VS++  D        CGGTHV++T E+ ++ +       A  RR+  + G
Sbjct: 200 VSIKDTDL-----QPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVLVLG 244


>gi|15597302|ref|NP_250796.1| hypothetical protein PA2106 [Pseudomonas aeruginosa PAO1]
 gi|9948120|gb|AAG05494.1|AE004638_4 hypothetical protein PA2106 [Pseudomonas aeruginosa PAO1]
          Length = 244

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 28/230 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-----KAEGIFVHHAIVERGI-- 564
           ++ DQT FY + GGQ GD+G   + DG RL+I D +K           +H     +    
Sbjct: 29  LLLDQTVFYPQGGGQAGDSGWLTLADGTRLRIADTRKGTEAGAGRDAILHIPAEGQATVL 88

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             ++    ++  ID+  R +    H+A H+L   L          NG  IT +  R D  
Sbjct: 89  RAMKPGEVVLAQIDWVRRYRHMRLHTAAHMLCAVLP------YPVNGCSITDEHARLDFV 142

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRV 678
            S+P++     +I+  +  ++    PV    M+ +   A        ++       +VR+
Sbjct: 143 TSEPLSRE---AIDSALAAMVEAAHPVSIDTMSDDALRARPDLVRTMSVQPPMGAGQVRL 199

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           VS++  D        CGGTHV++T E+ ++ +       A  RR+  + G
Sbjct: 200 VSIKDTDL-----QPCGGTHVANTEEVGVVRVSKMEKKSARTRRVVLVLG 244


>gi|254449956|ref|ZP_05063393.1| alanyl-transfer RNA synthetase domain protein [Octadecabacter
           antarcticus 238]
 gi|198264362|gb|EDY88632.1| alanyl-transfer RNA synthetase domain protein [Octadecabacter
           antarcticus 238]
          Length = 239

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  ++ D + FYA +GGQ GD+G     G  + I    K A G  +        +    
Sbjct: 24  DEGGIILDASIFYATSGGQPGDSGTLTWQGGAIDIATAVKGAGGTIILVPAEPNALPAVG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +  +++++ R +    H+A HLL   +       +   G  I  +  R D      I 
Sbjct: 84  TKVSQSLNWERRHRHMRVHTALHLLSVVIP------LPVTGGSIGAEKGRLDFDMPDAI- 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
            A+  ++E+ +N++I  +  + T  ++  +  A+       ++   K   R+R+V +   
Sbjct: 137 -ADKAALENTLNELIDCHFDISTEWIDESELAANPELVKTMSVAPPKGAGRIRMVRIGAA 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +        CGGTHV +T EI  +            RR+ 
Sbjct: 196 EN-TADYQPCGGTHVRNTSEIGRIRFGKVEKKGKQNRRVY 234


>gi|161524176|ref|YP_001579188.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia multivorans ATCC
           17616]
 gi|189351067|ref|YP_001946695.1| putative metal-dependent hydrolase [Burkholderia multivorans ATCC
           17616]
 gi|160341605|gb|ABX14691.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia multivorans ATCC
           17616]
 gi|189335089|dbj|BAG44159.1| predicted metal-dependent hydrolase [Burkholderia multivorans ATCC
           17616]
          Length = 243

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A +   E + EAV      +  D+T FY   GGQ GD G   + DG  + I D +K K +
Sbjct: 11  AYLAHCEAIVEAVGDDG--IRLDRTVFYPLGGGQAGDAGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V TID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDALHVPAPGQDADVAALAPGTRVVATIDWARRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             + +G  +T D +R D   S  I   +   +E  + +++    PV T  +  E+  A  
Sbjct: 124 -YAVDGCSVTADYVRLDFATSDAIDRDD---VERRLAELVRGAHPVTTEWITDEEMAARP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ ++  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIDGVDL-----QPCGGTHVRNTSEIGALRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|83953684|ref|ZP_00962405.1| hypothetical protein NAS141_05653 [Sulfitobacter sp. NAS-14.1]
 gi|83841629|gb|EAP80798.1| hypothetical protein NAS141_05653 [Sulfitobacter sp. NAS-14.1]
          Length = 239

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  +V D+T FY   GGQ GD+G    D  R+ I    K  +G  +        I +  
Sbjct: 24  DEGGIVLDRTVFYPTGGGQPGDSGWLNWDKQRMPIATTVKGLDGSIILVPAEPEEIPQPG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R +    HS  HLL       +       G  I+    R D        
Sbjct: 84  THVTQKLDWDRRHRHMRVHSLLHLLS------VVVPFPVVGGQISATHGRLDFDL--ADA 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             +   IED +   IAQ+LP+    + +E+  A+       ++        VR+V +  E
Sbjct: 136 PEDRDGIEDALASYIAQDLPITDHWITQEELQAAPELVKTLSVAPPVTAANVRLVQIG-E 194

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV+ TGEI  + +        G RRI 
Sbjct: 195 GDAWIDLQPCGGTHVARTGEIGAVRLGKIEKKGRGTRRIY 234


>gi|254467074|ref|ZP_05080485.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206687982|gb|EDZ48464.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 241

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 13/226 (5%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           E      +  ++ D+T FYA  GGQ GD+G  +    +  I    K  +G  V       
Sbjct: 20  EVLAQTDQGGIILDRTLFYATGGGQPGDSGKLLWAEGQCIIATTAKGEDGAVVLVPAEGS 79

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +     ++   +D+  R      H+A HLL   +       +   G  I     R D  
Sbjct: 80  ALPPVGATVTQVLDWDRRYGHMRVHTALHLLSVVIP------LEVTGGSIGDGKGRLDFN 133

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRV 678
             +     + ++++D +  +I ++L V    +   +  A+       ++   +   +VR+
Sbjct: 134 MPEA--PEDKQALQDRLQALIDRDLEVTDDWITDAELDANPQLVKTMSVAPPRGAGQVRL 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V +  E+  +     CGGTHV  TGEI  + +          RR+ 
Sbjct: 192 VRIGTEEEQID-LQPCGGTHVRRTGEIGKIRLGKVEKKGKQNRRVY 236


>gi|118103027|ref|XP_001235322.1| PREDICTED: similar to Alanyl-tRNA synthetase domain containing 1
           [Gallus gallus]
          Length = 539

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 133/348 (38%), Gaps = 26/348 (7%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           Q  D G        + +  V ++               L    +++L++D++ R      
Sbjct: 184 QPDDRGLI----GAVPVLRVTRRGAEAVH----FVETALEPGSAVLLSLDWERRFDHMQQ 235

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HL+      + G   +          +  D   +  +T+ +++++E +VN+ I + 
Sbjct: 236 HSGQHLITAIAEQMFGFKTTSWELGRQQSVIELD---TPSMTTEQMEALEQSVNEKIRER 292

Query: 647 LPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           +PV  R +  +D       +  L   +   VRVV +E  D     S +C GTHVS+  ++
Sbjct: 293 IPVTVRELAADDPEVETVRSRGLPGDHTGPVRVVDIEGID-----SNMCCGTHVSNLSDL 347

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
            ++ ++     +     +  + G R    +       K+L S LK   G  V  V+ +  
Sbjct: 348 QVIKLICTEKGKKNKTNLVFLAGNRVLKSVEQSHRTEKALTSLLKNGPGEHVEAVKRLQS 407

Query: 766 EY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                +   ++  R + + +      K            E DS+ +  + + +  K ++ 
Sbjct: 408 SVKLLQKNNLNLLRDIAVLIARDFKSKPVQSPLFVLHRKEGDSEFMNIIANEI-GKEETL 466

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           + + VG  KE    +L    E +       +L    A++L G G G R
Sbjct: 467 LFLTVGDEKEAGLFLLAGSVEAVE------NLGPRVAELLEGKGAGKR 508


>gi|253741613|gb|EES98479.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia intestinalis ATCC 50581]
          Length = 398

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 20/278 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E V  A +G  V V   Q+ F+ ++GGQLGDTG   G    L +           +H   
Sbjct: 15  EAVLPAKNGN-VYVRLSQSYFFPQSGGQLGDTGSIGG----LPVITTSCGEGHQPLHLMA 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                   ++ L   +D   RRQ SI+H+  H+          +  S          L  
Sbjct: 70  TAP---PEDVELSCIVDATYRRQNSISHTGQHVFSSVAERRFNAATSSYTMGAELSTLEL 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTK-YNDRVR 677
            +     ++  EL  IE+  NDII Q +PV  T + + E+       +    K  N  +R
Sbjct: 127 SI----KLSMDELLEIENQANDIIRQCIPVKSTLVYSEEELGRYPEISRSKLKSLNFPLR 182

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +   D     + LC GTH S+TGE  L+ + +  S R G+ +++   G RA S +  
Sbjct: 183 IVDIANVD-----TCLCCGTHASNTGECGLVKVFACESSRGGV-KVQFAVGDRALSLINK 236

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           +   L ++ + L     +V+  VE +  E + L+    
Sbjct: 237 RLMTLSTVCASLTTGHDSVIKSVEALQAESKALRTQEK 274


>gi|21226335|ref|NP_632257.1| alanyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|20904584|gb|AAM29929.1| Alanyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 270

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 21/234 (8%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHH-- 557
           VE+   G+   +V D+T FY E+GGQ  DTG  +   DG   ++    K    I      
Sbjct: 38  VEKVTEGK--YIVLDRTAFYPESGGQPSDTGKLVRERDGAEFKVVYAGKFNGDISHEISP 95

Query: 558 -AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                   L+    +   ID+  R +    H+ATH++ + +    G+ ++  G+ +  D 
Sbjct: 96  EGETGAEGLKVGDKVKGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQIT--GNQLGLDQ 153

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTK 671
            R D +  +     +    E   N+IIA+N  V   +++R++A          A     +
Sbjct: 154 SRVDFSL-EAFDREKFAEYEKIANEIIAENHSVNLYLVSRKEAEERLSRLTTLAKGFSEE 212

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             + VR+V +E       +   CGG+H+ +TGEI  + I    +     RR+  
Sbjct: 213 ITE-VRLVEIEG-----VTIEACGGSHLKNTGEIKGIKIEKLQNKGKSNRRMYF 260


>gi|218662981|ref|ZP_03518911.1| alanyl-tRNA synthetase protein [Rhizobium etli IE4771]
          Length = 245

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 20/242 (8%)

Query: 492 VKAIVQQG------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT 544
           V A+ +        E V  AV      +  DQT FYA +GGQ GDTG     DG ++ + 
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHDDGG-IELDQTCFYAASGGQPGDTGQLERADGSKIALG 61

Query: 545 DVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             +   ++ I +H  +          +LVL +D+  R +L   H+A HLL    S     
Sbjct: 62  QTKHGASKDIIIHVPLDNEPQPEIGETLVLHVDWPRRYRLMRMHTACHLLSVICS----- 116

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D   S+ I   E   +   + ++I QN PV  + +  ++  A+ 
Sbjct: 117 -YPITGAAVGEEESRIDFDMSETIDKDE---VTARLMELIGQNHPVYLQWITDDELAANP 172

Query: 664 AAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                          RV  V   +     S  CGGTHVS T E+  ++I          R
Sbjct: 173 DIVKSKNVRPPIGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENR 232

Query: 722 RI 723
           R 
Sbjct: 233 RF 234


>gi|90423529|ref|YP_531899.1| threonyl/alanyl tRNA synthetase, SAD [Rhodopseudomonas palustris
           BisB18]
 gi|90105543|gb|ABD87580.1| Ala-tRNA(Pro) hydrolase [Rhodopseudomonas palustris BisB18]
          Length = 240

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 14/227 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG--IFVHH 557
           E     ++  +  +  D+T FY + GGQ GDTG  +     L++T+  +  +   +  H 
Sbjct: 20  EFSANVLAATETALALDRTCFYPQGGGQPGDTGQIVAADRVLKVTNTYRDRDNPALIWHD 79

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                  L    S+   ID++ R      H+  HLL   +           G  I  D  
Sbjct: 80  CEPGPDGLLRGESVQGVIDWERRYGHMRMHTCLHLLCSLI------DAPVTGCSIAADKG 133

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RV 676
           R D    +     +   I   +N++I  + PV      R          L  TK  +  V
Sbjct: 134 RLDFDLPEMTLDKD--EISRRLNELIEVDHPVRRV---RATENLEQVMRLTRTKLVEAPV 188

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R   +            CGGTHV+S+ EI  +            RR+
Sbjct: 189 RDGKINLVQIADVDLQPCGGTHVASSREIGRVVCAKIEKKSRHNRRV 235


>gi|148559488|ref|YP_001258988.1| hypothetical protein BOV_1019 [Brucella ovis ATCC 25840]
 gi|148370745|gb|ABQ60724.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 247

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 13/223 (5%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQI-TDVQKKAEGIFVHHAIVER 562
           A++G    ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     +
Sbjct: 24  AIAGNGG-IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQ 82

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      LVL ID+Q R +L   H+A HLL  A            G+ +  D  R D  
Sbjct: 83  QMPDVGEKLVLHIDWQRRYKLMRMHTACHLLSVACP------FPITGAAVGEDESRVDFN 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVS 680
                 + E  S+ + + +++  N PV    ++ E+ +A+                R+  
Sbjct: 137 LPDQSYTKE--SVTEKLMELVQANAPVSIHWISDEEFLANPDIVKSKNVRPPVGLGRIRL 194

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V   + G   S  CGGTHVS T E+  ++I          RR 
Sbjct: 195 VAIGENGSVDSQPCGGTHVSETQEVGEIHIGKIEKKGKENRRF 237


>gi|17987215|ref|NP_539849.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|23501932|ref|NP_698059.1| hypothetical protein BR1054 [Brucella suis 1330]
 gi|62289975|ref|YP_221768.1| hypothetical protein BruAb1_1059 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699903|ref|YP_414477.1| alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus
           2308]
 gi|161619004|ref|YP_001592891.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843321|ref|YP_001627725.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189024217|ref|YP_001934985.1| Alanyl-transfer RNA synthetase [Brucella abortus S19]
 gi|225627528|ref|ZP_03785565.1| Alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225852557|ref|YP_002732790.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|237815478|ref|ZP_04594476.1| Alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|254689282|ref|ZP_05152536.1| Alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254693766|ref|ZP_05155594.1| Alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|254697419|ref|ZP_05159247.1| Alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701801|ref|ZP_05163629.1| Alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|254704343|ref|ZP_05166171.1| Alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254706757|ref|ZP_05168585.1| Alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|254710136|ref|ZP_05171947.1| Alanyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714135|ref|ZP_05175946.1| Alanyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716807|ref|ZP_05178618.1| Alanyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|254730317|ref|ZP_05188895.1| Alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256031631|ref|ZP_05445245.1| Alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256044713|ref|ZP_05447617.1| Alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113605|ref|ZP_05454425.1| Alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|256159773|ref|ZP_05457516.1| Alanyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255031|ref|ZP_05460567.1| Alanyl-tRNA synthetase [Brucella ceti B1/94]
 gi|256257532|ref|ZP_05463068.1| Alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|256263952|ref|ZP_05466484.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369479|ref|YP_003106987.1| hypothetical protein BMI_I1059 [Brucella microti CCM 4915]
 gi|260168760|ref|ZP_05755571.1| hypothetical protein BruF5_10408 [Brucella sp. F5/99]
 gi|260545278|ref|ZP_05821019.1| alanyl-transfer RNA synthetase [Brucella abortus NCTC 8038]
 gi|260564056|ref|ZP_05834542.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260566409|ref|ZP_05836879.1| alanyl-transfer RNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260754791|ref|ZP_05867139.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 6 str.
           870]
 gi|260758014|ref|ZP_05870362.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 4 str.
           292]
 gi|260761837|ref|ZP_05874180.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883808|ref|ZP_05895422.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 9 str.
           C68]
 gi|261214042|ref|ZP_05928323.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218606|ref|ZP_05932887.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M13/05/1]
 gi|261222223|ref|ZP_05936504.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti B1/94]
 gi|261314219|ref|ZP_05953416.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M163/99/10]
 gi|261317689|ref|ZP_05956886.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis B2/94]
 gi|261321897|ref|ZP_05961094.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M644/93/1]
 gi|261752358|ref|ZP_05996067.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 5 str. 513]
 gi|261755016|ref|ZP_05998725.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 3 str. 686]
 gi|261758241|ref|ZP_06001950.1| alanyl-transfer RNA synthetase [Brucella sp. F5/99]
 gi|265988722|ref|ZP_06101279.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M292/94/1]
 gi|265991136|ref|ZP_06103693.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994972|ref|ZP_06107529.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998187|ref|ZP_06110744.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M490/95/1]
 gi|294852359|ref|ZP_06793032.1| alaS [Brucella sp. NVSL 07-0026]
 gi|297248374|ref|ZP_06932092.1| alaS; alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|17982886|gb|AAL52113.1| metal-dependent hydrolase [Brucella melitensis bv. 1 str. 16M]
 gi|23347876|gb|AAN29974.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62196107|gb|AAX74407.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616004|emb|CAJ11030.1| Alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus
           2308]
 gi|161335815|gb|ABX62120.1| Alanyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674044|gb|ABY38155.1| Alanyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|189019789|gb|ACD72511.1| Alanyl-transfer RNA synthetase [Brucella abortus S19]
 gi|225617533|gb|EEH14578.1| Alanyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225640922|gb|ACO00836.1| Alanyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|237790315|gb|EEP64525.1| Alanyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|255999639|gb|ACU48038.1| hypothetical protein BMI_I1059 [Brucella microti CCM 4915]
 gi|260096685|gb|EEW80560.1| alanyl-transfer RNA synthetase [Brucella abortus NCTC 8038]
 gi|260154072|gb|EEW89164.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260155927|gb|EEW91007.1| alanyl-transfer RNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260668332|gb|EEX55272.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 4 str.
           292]
 gi|260672269|gb|EEX59090.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674899|gb|EEX61720.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 6 str.
           870]
 gi|260873336|gb|EEX80405.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 9 str.
           C68]
 gi|260915649|gb|EEX82510.1| threonyl/alanyl tRNA synthetase SAD [Brucella abortus bv. 3 str.
           Tulya]
 gi|260920807|gb|EEX87460.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti B1/94]
 gi|260923695|gb|EEX90263.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M13/05/1]
 gi|261294587|gb|EEX98083.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M644/93/1]
 gi|261296912|gb|EEY00409.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis B2/94]
 gi|261303245|gb|EEY06742.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M163/99/10]
 gi|261738225|gb|EEY26221.1| alanyl-transfer RNA synthetase [Brucella sp. F5/99]
 gi|261742111|gb|EEY30037.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 5 str. 513]
 gi|261744769|gb|EEY32695.1| threonyl/alanyl tRNA synthetase SAD [Brucella suis bv. 3 str. 686]
 gi|262552655|gb|EEZ08645.1| threonyl/alanyl tRNA synthetase SAD [Brucella ceti M490/95/1]
 gi|262766085|gb|EEZ11874.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001920|gb|EEZ14495.1| threonyl/alanyl tRNA synthetase SAD [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094096|gb|EEZ18018.1| alanyl-transfer RNA synthetase [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660919|gb|EEZ31180.1| threonyl/alanyl tRNA synthetase SAD [Brucella pinnipedialis
           M292/94/1]
 gi|294820948|gb|EFG37947.1| alaS [Brucella sp. NVSL 07-0026]
 gi|297175543|gb|EFH34890.1| alaS; alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|326409075|gb|ADZ66140.1| Alanyl-transfer RNA synthetase [Brucella melitensis M28]
 gi|326538781|gb|ADZ86996.1| Alanyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 247

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 13/223 (5%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQI-TDVQKKAEGIFVHHAIVER 562
           A++G    ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     +
Sbjct: 24  AIAGNGG-IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQ 82

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      LVL ID+Q R +L   H+A HLL  A            G+ +  D  R D  
Sbjct: 83  QMPDVGEKLVLHIDWQRRYKLMRMHTACHLLSVACP------FPITGAAVGEDESRVDFD 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVS 680
                 + E  S+ + + +++  N PV    ++ E+ +A+                R+  
Sbjct: 137 LPDQSYTKE--SVTEKLMELVQANAPVSIHWISDEEFLANPDIVKSKNVRPPVGLGRIRL 194

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V   + G   S  CGGTHVS T E+  ++I          RR 
Sbjct: 195 VAIGENGSVDSQPCGGTHVSETQEVGEIHIGKIEKKGKENRRF 237


>gi|83942465|ref|ZP_00954926.1| hypothetical protein EE36_15532 [Sulfitobacter sp. EE-36]
 gi|83846558|gb|EAP84434.1| hypothetical protein EE36_15532 [Sulfitobacter sp. EE-36]
          Length = 239

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 13/220 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            +  +V D+T FY   GGQ GD+G    D  R+ I    K  +G  +        I +  
Sbjct: 24  DEGGIVLDRTVFYPTGGGQPGDSGWLNWDKQRMPIATTVKGLDGSIILVPAEPEEIPQPG 83

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R +    HS  HLL       +       G  I+    R D        
Sbjct: 84  THVTQKLDWDRRHRHMRVHSLLHLLS------VVVPFPVVGGQISATHGRLDFDL--ADA 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             +   IED +   IAQ+LP+    + +E+  A+       ++        VR+V +  E
Sbjct: 136 PEDRDGIEDALASYIAQDLPITDHWITQEELQAAPELVKTLSVAPPVTAANVRLVQIG-E 194

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV+ TGEI  + +        G RRI 
Sbjct: 195 GDAWIDLQPCGGTHVARTGEIGAVRLGKIEKKGRGTRRIY 234


>gi|328880598|emb|CCA53837.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 192

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264
            M+  + +      LP+ ++DTG+GLER+A++LQ K++ +D D+F    +    +  ++ 
Sbjct: 1   MMRHRRLDDGSLVPLPQRNVDTGLGLERLASLLQGKSSVFDCDVFDPWRRLLPGLWPLE- 59

Query: 265 EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH 324
                 + R++ DHLRS+  +I DG+ P   GRGYVLRR++RR +    +L   +P    
Sbjct: 60  ----ETSLRLVSDHLRSAVVVIGDGVRPGATGRGYVLRRLIRRVL---TVLWRDDPR-RG 111

Query: 325 LLPALCTEMGSAYPELIQA--KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382
           L+      +        Q   +  +   L        +   R L     VL+       L
Sbjct: 112 LVDLPSELVEHTLDHFRQDTGQDEVRRVLLD----EERRFRRLLERGRQVLARPRFQRPL 167

Query: 383 NGDVAFKLYDTHGLPLDIMQDILCA 407
             +    L+DTHGLP D++  +   
Sbjct: 168 GEEDLHYLHDTHGLPRDLVLSLREE 192


>gi|228938887|ref|ZP_04101487.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971768|ref|ZP_04132389.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978377|ref|ZP_04138754.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           Bt407]
 gi|228781394|gb|EEM29595.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           Bt407]
 gi|228787858|gb|EEM35816.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820736|gb|EEM66761.1| Alanyl-tRNA synthetase domain protein [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939387|gb|AEA15283.1| alanyl-tRNA synthetase-like metal-dependent hydrolase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 236

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V K+ +G  VH+   +  
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKV-KREQGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEMNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A         A  LL T   + +R+
Sbjct: 133 LQELSSVEVEEIVEEVNKLIEQNKEISTRYMSREEAENAVGMIKTAINLLPTTIRE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|290463151|sp|Q8Q0A4|ALAXM_METMA RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           Short=AlaXp; AltName: Full=Alanyl-tRNA deacylase AlaX-M
          Length = 251

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 21/234 (8%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHH-- 557
           VE+   G+   +V D+T FY E+GGQ  DTG  +   DG   ++    K    I      
Sbjct: 19  VEKVTEGK--YIVLDRTAFYPESGGQPSDTGKLVRERDGAEFKVVYAGKFNGDISHEISP 76

Query: 558 -AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
                   L+    +   ID+  R +    H+ATH++ + +    G+ ++  G+ +  D 
Sbjct: 77  EGETGAEGLKVGDKVKGIIDWDRRYRHMRMHTATHVIANVIEKEAGAQIT--GNQLGLDQ 134

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTK 671
            R D +  +     +    E   N+IIA+N  V   +++R++A          A     +
Sbjct: 135 SRVDFSL-EAFDREKFAEYEKIANEIIAENHSVNLYLVSRKEAEERLSRLTTLAKGFSEE 193

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             + VR+V +E       +   CGG+H+ +TGEI  + I    +     RR+  
Sbjct: 194 ITE-VRLVEIEG-----VTIEACGGSHLKNTGEIKGIKIEKLQNKGKSNRRMYF 241


>gi|195340984|ref|XP_002037092.1| GM12293 [Drosophila sechellia]
 gi|194131208|gb|EDW53251.1| GM12293 [Drosophila sechellia]
          Length = 436

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 145/387 (37%), Gaps = 30/387 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V  + T  + E GGQ  D G   G      + +VQ+K  G    H +        +  
Sbjct: 41  FNVTCEDTILFPEGGGQPCDYGTLGG----FPVKNVQRK--GSTAVHFVESTTSFEQDAE 94

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++LT+DYQ R      HS  HL+            +      +   ++   +H   I+  
Sbjct: 95  VLLTLDYQRRLDHMQQHSGQHLITALFDREFKYDTTSWSLGSSVSYIQLSTSHL--ISRE 152

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSVEYEDGG 687
            L  IE   ND+I +   V   +++ + A     + A   L   +    RVV +E  +  
Sbjct: 153 SLDLIERQANDLIREGREVTVLLVDPKVAQEFQDARAPRGLPKDHVGLARVVRIEGIE-- 210

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
              S +C GTHV++  ++  + ++    +++ +  +  + G+R    L    ++ + L  
Sbjct: 211 ---SNMCCGTHVTNLSQLQCIKLLYAEKVKSNVL-VHFVVGERVLVKLGEVFQREQQLTQ 266

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQL---IHAKRKLQLNVEDL--SCHKIADVNFMSHIIS 802
            LK   G  +  V+++ +  +  +       KR      E L     K     F  H   
Sbjct: 267 ALKGGPGQHLELVQKLQQNVKGSRKYFQQLLKRYATAEAERLCDLPKKDRPKYFSLHRRD 326

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEK--KASVLIVVTEDLLDRFNAVDLARLSA 860
            ++   + + +    ++I   + +   +      K  +++    +++       L     
Sbjct: 327 GIEVDFINTFLRVAPEEIFYFLTVSESVFAGSSAKGHLVLRGDPEIV-----GKLGPQFV 381

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           ++L  G G G+    Q    N ++ ++
Sbjct: 382 EILE-GKGNGKEGNFQGKINNLSRLEK 407


>gi|48477442|ref|YP_023148.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430090|gb|AAT42955.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 249

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     ++    EV+ D+T FY   GGQ  DTG  + D  + Q+ DV K  + I    +
Sbjct: 24  KEFDATVLNVNGDEVILDRTCFYPTGGGQPNDTGLLLKDDKKYQVIDVYKNNDDIIHKIS 83

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
               G       L   ID+  R  L   H+A H++   +      H    G  +  D  R
Sbjct: 84  GDVPGR---GDKLHGIIDWDRRYSLMRYHTAVHIIDGVVKNYYNDHGMLTGGQLYTDHAR 140

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-----KYN 673
            D      I    +++I +  N+II + L V  + + R++A+A    A         +  
Sbjct: 141 VDFDFD-DINRELIETIINQSNEIIEKGLNVFEKTLTRDEALAIPDLARTEPGRRLIESL 199

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           D VRV+ +E            GGTHV +T E+  + I    +   G +R+E 
Sbjct: 200 DYVRVIEIEG-----FDMQSDGGTHVKNTSEVGKIIIKKIENKGRGHKRLEF 246


>gi|301053311|ref|YP_003791522.1| putative alanine-tRNA ligase [Bacillus anthracis CI]
 gi|300375480|gb|ADK04384.1| possible alanine-tRNA ligase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 236

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+  ++ G
Sbjct: 18  EVIKVEGNKVFVKETVFYPTGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHY--IKDG 74

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                  + L I+++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 75  AQVKLGPVKLEINWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRV 678
            + ++S E++ I   VN +I QN  + TR M+RE+A  +         LL     + +R+
Sbjct: 133 LQELSSVEVEEIVKEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPITIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S      R E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNCRFE 232


>gi|218463377|ref|ZP_03503468.1| alanyl-tRNA synthetase protein [Rhizobium etli Kim 5]
          Length = 245

 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 92/242 (38%), Gaps = 20/242 (8%)

Query: 492 VKAIVQQG------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545
           V A+ +        E V  AV      +  DQT FYA +GGQ GDTG          +  
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHDDGG-IELDQTCFYAASGGQPGDTGQLERADGSKIVLG 61

Query: 546 VQKKA--EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             K    + I +H  +          +LVL +D+  R +L   H+A HLL    S     
Sbjct: 62  QTKHGASKDIIIHVPLDNEPQPEIGETLVLHVDWPRRYRLMRMHTACHLLSVICS----- 116

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D   S+ I   E   +   + +++ QN PV  + +  ++  A+ 
Sbjct: 117 -YPITGAAVGEEESRIDFDMSETIDKDE---VTARLMELVGQNHPVYLQWITDDELAANP 172

Query: 664 AAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                          RV  V   +     S  CGGTHVS T E+  ++I          R
Sbjct: 173 DIVKSKNVRPPIGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENR 232

Query: 722 RI 723
           R 
Sbjct: 233 RF 234


>gi|89069105|ref|ZP_01156478.1| hypothetical protein OG2516_15309 [Oceanicola granulosus HTCC2516]
 gi|89045278|gb|EAR51344.1| hypothetical protein OG2516_15309 [Oceanicola granulosus HTCC2516]
          Length = 237

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 15/234 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A ++  +    A++ ++  VV D+T FYA  GGQ GD+G    DG  ++I    K A+G 
Sbjct: 10  AYLRDADAEVTALT-EEGGVVLDRTIFYATGGGQPGDSGRLSWDGGAIEIATTVKGADGD 68

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V        +      +   +D++ R +    H+A HLL  A+       +   G  IT
Sbjct: 69  VVLVPAEPAPLPPAGARVRQELDWERRHRHMRVHTALHLLSVAIP------LPVTGGSIT 122

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLG 669
            +  R D              IE  +  ++A +LPV    +   +  A         +  
Sbjct: 123 AEKGRLDFDMPDAPARDG---IEAALARMVAADLPVSAEWITEGELDARPDLVKTLRVQP 179

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +   RVR+V +  +         CGGTHV+STGEI  L +          RR+
Sbjct: 180 PRGTGRVRLVRIG-QGADTLDLQPCGGTHVASTGEIGALRLGKVEKKGRQNRRV 232


>gi|190891467|ref|YP_001978009.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|190696746|gb|ACE90831.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 245

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 20/242 (8%)

Query: 492 VKAIVQQG------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT 544
           V A+ +        E V  A+      +  DQT FYA +GGQ GDTG     DG ++ + 
Sbjct: 3   VNALYRDDFYLSTCEAVVTAIHDDGG-IELDQTCFYATSGGQPGDTGQLERADGSKIALG 61

Query: 545 DVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             +   ++ I +H  +          +LVL +D+  R +L   H+A HLL    S     
Sbjct: 62  QTKHGASKDIIIHVPLENEPQPEIGETLVLHVDWPRRYRLMRMHTACHLLSVICS----- 116

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D   S+ I   E   +   + +++ QN PV  + +  ++  A+ 
Sbjct: 117 -YPITGAAVGEEESRIDFDMSETIDKDE---VTARLMELVGQNHPVYLQWITDDELAANP 172

Query: 664 AAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                          RV  V         S  CGGTHVS T E+  ++I          R
Sbjct: 173 DIVKSKNVRPPMGLGRVSLVCIGKNSSIDSQPCGGTHVSETQEVGQVHIAKIEKKGKENR 232

Query: 722 RI 723
           R 
Sbjct: 233 RF 234


>gi|222085755|ref|YP_002544285.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
 gi|221723203|gb|ACM26359.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84]
          Length = 245

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 93/241 (38%), Gaps = 18/241 (7%)

Query: 492 VKAIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITD 545
           V A+ +    +  A +      +   +  DQT FYA +GGQ GDTG     DG ++ +  
Sbjct: 3   VNALYRDDFYLSTAEAVVTAIHEDGGIELDQTCFYATSGGQPGDTGFLERADGSKIMLGQ 62

Query: 546 VQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
            +    + I +H  +           LVL +D+  R +L   H+A HLL           
Sbjct: 63  TRHGPIKDIIIHVPLESEAQPILGEKLVLHVDWPRRYKLMRMHTACHLLSVVCQ------ 116

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ +  D  R D   S+ I   E   +   +  ++ +N PV  + +  E+  A+  
Sbjct: 117 FPITGAAVGEDESRVDFDMSETIDKDE---VTAKMMALVNENHPVFVQWITDEELAANPG 173

Query: 665 AALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         RV  V   +     S  CGGTHVS T E+  ++I          RR
Sbjct: 174 IVKSKNVRPPVGLGRVSLVCIGENSAVDSQPCGGTHVSETQEVGAIHIAKIEKKGKENRR 233

Query: 723 I 723
            
Sbjct: 234 F 234


>gi|239617886|ref|YP_002941208.1| Threonyl/alanyl tRNA synthetase SAD [Kosmotoga olearia TBF 19.5.1]
 gi|239506717|gb|ACR80204.1| Threonyl/alanyl tRNA synthetase SAD [Kosmotoga olearia TBF 19.5.1]
          Length = 377

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 137/358 (38%), Gaps = 37/358 (10%)

Query: 520 FYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
            Y +  GGQLGD G   G+ I LQ+  V      +       ++    T   + L +D +
Sbjct: 24  LYVDGEGGQLGDRGKIDGNKI-LQVKRVDGYPCAVI-----EKKNNYSTGEFVELELDLE 77

Query: 579 NRRQLSINHSATHLLHH-ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            R  ++  H+A HLL   AL  +    V   G  +  +    D+T    +     + +ED
Sbjct: 78  RRVDIAQQHTAQHLLSAVALRELDAETV---GFQMGEEFSTIDLTI-GLLEDKMKRLLED 133

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
             ND I + LPV  + ++  +         +  K  ++   + +   +G     + CGG 
Sbjct: 134 VSNDCILKLLPVTVKEVDPSEIFRYNLRKSVSDKILEKAEKIRLVKIEG--IDVSPCGGF 191

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +TGE+ LL I+    ++  + R+  + G+RA      +   L SL   L      +V
Sbjct: 192 HVKNTGEVGLLKILKVEKVKGNLTRVYFVAGKRAIRVFQNEHSILGSLGKLLTCGYHELV 251

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            R + I E+ +                 +  ++I    ++  I  E  +   ++  + L 
Sbjct: 252 SRTQSILEDLK-----------------IMNNRIKG--YVERIAKETANNLSENSSELLL 292

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTED----LLDRFNAVDLARLSAKVLGGGGGGGR 871
            +    I+ ++    +K+  +      +        ++   L +         GG G+
Sbjct: 293 YEDDEEILSMIPRFLDKECYIFFGKAGEKIILASKGYDLTILVKELKSRFDIKGGAGK 350


>gi|229144386|ref|ZP_04272791.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST24]
 gi|228639017|gb|EEK95442.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus BDRD-ST24]
          Length = 236

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E +  +  +V   +T FY   GGQ  DTG  + DG   ++  V+K+ +G  VH+   +  
Sbjct: 18  EVIKVEGNKVFVKETVFYPAGGGQECDTGVIVQDGSVFEVEKVKKE-QGEIVHYIK-DEA 75

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    + L ++++ R  L  +HS  HL+   +    G+  +  G+ I PD  R D   
Sbjct: 76  QVKLG-PVKLEMNWERRHNLMRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNE 132

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV 678
            + ++S E++ I + VN +I QN  + TR M+RE+A         A  LL T   + +R+
Sbjct: 133 LQELSSMEVEEIVEEVNKLIKQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           V++E  D        CGGTHV +T EI  L I    S     RR E
Sbjct: 192 VTIENLD-----EQACGGTHVKNTSEIGTLVIDKVKSKGKQNRRFE 232


>gi|269836349|ref|YP_003318577.1| Threonyl/alanyl tRNA synthetase SAD [Sphaerobacter thermophilus DSM
           20745]
 gi|269785612|gb|ACZ37755.1| Threonyl/alanyl tRNA synthetase SAD [Sphaerobacter thermophilus DSM
           20745]
          Length = 247

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 99/240 (41%), Gaps = 19/240 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           AV G+   VV D+T FY   GGQ  D G         Q+  + ++   I   H +     
Sbjct: 21  AVVGETG-VVLDRTAFYPGGGGQPHDLGTLTDGTHSWQVVRIAREDGQIV--HVLEGGAP 77

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                +L   ID+  R +L   HSA H+L   +    G+ V+  G  + PD  R D    
Sbjct: 78  PPPGTALRGEIDWDRRYRLMRMHSALHVLCGVVFREYGALVT--GGNMGPDKARMDFEL- 134

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRV 678
           + +    +  IE   N+ IA  LP+  R + RE+A       L+ TK N        VRV
Sbjct: 135 EDLNPERVAHIERTANERIAAGLPISWRTLPREEAFQI--PDLIRTKINLLPAHIQEVRV 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V +E  D         GGTHV +T EI  L ++   S     +R+E      A     G+
Sbjct: 193 VEIEGLDL-----QADGGTHVRNTREIGGLKVIGTRSKGRINKRLEIALVDDAVDEERGE 247


>gi|34763243|ref|ZP_00144205.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887096|gb|EAA24205.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 375

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 112/280 (40%), Gaps = 25/280 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G      I +++ +       + +    ++ G           I
Sbjct: 20  NSPFYTDGKGGQLGDRGTISNANI-IEVKE------NLVILDKDLKDG------EYTYFI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +   H+A H+         G  ++  G  +  +    D+   K I+   ++ +
Sbjct: 67  DEKRREDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKEIIEKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E+ VN+ I  ++ V   I   E+A         +  K    VR + +     G      C
Sbjct: 124 EELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVRFIKI-----GDIDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HVS T +I +  I++  +I+    R   + G+RA++    + + +K L +       
Sbjct: 179 AGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNKKHDIIKKLTNIFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
            ++  +++   E  K+++    + L +   +L      ++
Sbjct: 239 EILEMLDKSLTE--KVKISTELKSLSMKYIELMVKDFENI 276


>gi|257139722|ref|ZP_05587984.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis E264]
          Length = 243

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAEGIF----VHHA 558
             +  +  +  D+T FY   GGQ GDTG   +  G  L + D +K K +G      VH  
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGAALVVADTRKAKFDGATPDDAVHVL 79

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
              +  L    +   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVKPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           + +R D    +PI   +   +E  + +++    PV T  +  ++  A        ++   
Sbjct: 134 EYVRIDFATVEPIDREQ---VETRLAELVGGAHPVTTEWITDDEMAARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|306843926|ref|ZP_07476521.1| alanyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275681|gb|EFM57405.1| alanyl-tRNA synthetase [Brucella sp. BO1]
          Length = 247

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQI-TDVQKKAEGIFVHHAIVER 562
           A++G    ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     +
Sbjct: 24  AIAGNGG-IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQ 82

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      LVL ID+Q R +L   H+A HLL      +    ++  G+ +  D  R D  
Sbjct: 83  QMPDVGEKLVLHIDWQRRYKLMRMHTACHLLS----VVCPFPIT--GAAVGEDESRVDFD 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVS 680
                 + E  S+ + + +++  N PV    ++ E+ +A+                R+  
Sbjct: 137 LPDQSYTKE--SVTEKLMELVQANAPVSIHWISDEEFLANPDIVKSKNVRPPVGLGRIRL 194

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V   + G   S  CGGTHV  T E+  ++I          RR 
Sbjct: 195 VAIGENGSVDSQPCGGTHVCETQEVGEIHIGKIEKKGKENRRF 237


>gi|323335842|gb|EGA77121.1| YNL040W-like protein [Saccharomyces cerevisiae Vin13]
 gi|323346922|gb|EGA81201.1| YNL040W-like protein [Saccharomyces cerevisiae Lalvin QA23]
 gi|323352599|gb|EGA85098.1| YNL040W-like protein [Saccharomyces cerevisiae VL3]
          Length = 452

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 145/382 (37%), Gaps = 39/382 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +  E+    T  + E GGQ  D+G               +I        G+   H + + 
Sbjct: 39  EGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAKHHVNDY 98

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCIT 613
             +    ++ + +D Q R      H+  HLL   L            +G  +++    + 
Sbjct: 99  --IEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPVLE 156

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLGTK 671
           P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + +   
Sbjct: 157 PSDYFNYIELNRKLTLDEITNVSDEINQLI-INFPQEIIVEERIGEETVDEVSTSKIPDD 215

Query: 672 Y---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAIT 727
           Y      +R + +     G   S  C GTH+  T +I    I+ ++S++R    R+  + 
Sbjct: 216 YDLSKGVLRTIHI-----GDIDSNPCCGTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMC 270

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 271 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 330

Query: 785 DLSCHKIADVNFMSHIIS------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +L     A     ++ +       E+  +  K V + L+   +   I+L G  ++     
Sbjct: 331 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCGYERQTNTGS 390

Query: 839 LIVVTEDLLDRFN-AVDLARLS 859
           L++++E      N A +L  + 
Sbjct: 391 LLILSESGEKIANLAANLGSIL 412


>gi|190409032|gb|EDV12297.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|256273271|gb|EEU08212.1| YNL040W-like protein [Saccharomyces cerevisiae JAY291]
 gi|259149320|emb|CAY82562.1| EC1118_1N9_3334p [Saccharomyces cerevisiae EC1118]
          Length = 456

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 145/382 (37%), Gaps = 39/382 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +  E+    T  + E GGQ  D+G               +I        G+   H + + 
Sbjct: 43  EGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAKHHVNDY 102

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCIT 613
             +    ++ + +D Q R      H+  HLL   L            +G  +++    + 
Sbjct: 103 --IEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPVLE 160

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLGTK 671
           P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + +   
Sbjct: 161 PSDYFNYIELNRKLTLDEITNVSDEINQLI-INFPQEIIVEERIGEETVDEVSTSKIPDD 219

Query: 672 Y---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAIT 727
           Y      +R + +     G   S  C GTH+  T +I    I+ ++S++R    R+  + 
Sbjct: 220 YDLSKGVLRTIHI-----GDIDSNPCCGTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DLSCHKIADVNFMSHIIS------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +L     A     ++ +       E+  +  K V + L+   +   I+L G  ++     
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCGYERQTNTGS 394

Query: 839 LIVVTEDLLDRFN-AVDLARLS 859
           L++++E      N A +L  + 
Sbjct: 395 LLILSESGEKIANLAANLGSIL 416


>gi|151944492|gb|EDN62770.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 456

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 145/382 (37%), Gaps = 39/382 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +  E+    T  + E GGQ  D+G               +I        G+   H + + 
Sbjct: 43  EGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAKHHVNDY 102

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCIT 613
             +    ++ + +D Q R      H+  HLL   L            +G  +++    + 
Sbjct: 103 --IEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAILERNYKVDTVSWSMGGIITKKKPVLE 160

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLGTK 671
           P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + +   
Sbjct: 161 PSDYFNYIELNRKLTLDEITNVSDEINQLI-INFPQEIIVEERIGEETVDEVSTSKIPDD 219

Query: 672 Y---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAIT 727
           Y      +R + +     G   S  C GTH+  T +I    I+ ++S++R    R+  + 
Sbjct: 220 YDLSKGVLRTIHI-----GDIDSNPCCGTHLKCTSQIGSTLILPNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DLSCHKIADVNFMSHIIS------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +L     A     ++ +       E+  +  K V + L+   +   I+L G  ++     
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCGYERQTNTGS 394

Query: 839 LIVVTEDLLDRFN-AVDLARLS 859
           L++++E      N A +L  + 
Sbjct: 395 LLILSESGEKIANLAANLGSIL 416


>gi|171321067|ref|ZP_02910049.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MEX-5]
 gi|171093659|gb|EDT38811.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MEX-5]
          Length = 243

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 96/244 (39%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + Q + V  AV      +  D+T FY   GGQ GD+G   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDG--IRLDRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+Q R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
               +G  +T D +R D   S  I  A+   +E  + +++     V T  +   +     
Sbjct: 124 -YPVDGCSVTADYVRLDFATSDAIDRAD---VERRLAELVRGAHAVTTEWITDAEMTERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +   D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIAGVDL-----QPCGGTHVRNTSEIGDLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRV 238


>gi|237741554|ref|ZP_04572035.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|229429202|gb|EEO39414.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
          Length = 375

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 109/279 (39%), Gaps = 25/279 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G    D   +++ +       + +    +E G           I
Sbjct: 20  NSPFYTDGKGGQLGDRGTI-SDANIIEVKE------NLVILDKDLEDG------EYTYFI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +   H+A H+         G  ++  G  +  +    D+   K I+   ++ +
Sbjct: 67  DEKRREDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTIDLD-QKDISKEIIEKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E  VN+ I  ++ V   I   E+A         +  K    VR + +     G      C
Sbjct: 124 EKLVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVRFIKI-----GDIDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HVS T +I +  I++  +I+    R   + G+RA++    + + +K L +       
Sbjct: 179 AGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNKKHDIIKKLTNIFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            ++  +++   E  K ++    + L +   +L      +
Sbjct: 239 EILEMLDKSLTE--KAKITTELKSLSIKYAELMVKDFEN 275


>gi|294785828|ref|ZP_06751116.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|294487542|gb|EFG34904.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 375

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 110/279 (39%), Gaps = 25/279 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G    D   +++ +       + +    +E G           I
Sbjct: 20  NSPFYTDGKGGQLGDRGTI-SDANIIEVKE------NLVILDKDLEDG------EYTYFI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +   H+A H+         G  ++  G  +  +    D+   K I+   ++ +
Sbjct: 67  DEKRREDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTIDLD-QKDISKEIIEKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E+ VN+ I  ++ V   I   E+A         +  K    VR + +     G      C
Sbjct: 124 EELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVRFIKI-----GDIDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HVS T +I +  I++  +I+    R   + G+RA++    + + +K L +       
Sbjct: 179 AGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNKKHDIIKKLTNIFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            ++  +++   E  K ++    + L +   +L      +
Sbjct: 239 EILEMLDKSLTE--KTKITTELKSLSIKYAELMVKDFEN 275


>gi|254247630|ref|ZP_04940951.1| Threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           PC184]
 gi|124872406|gb|EAY64122.1| Threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           PC184]
          Length = 243

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + Q E + +AV      +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAVGDDG--IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQEASVATLAPGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             + +G  +T D +R D   S  I   +   +E  +   +    PV T  +  ++     
Sbjct: 124 -YAVDGCSVTADYVRLDFATSDAIDRDD---VERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVDL-----QPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|209549040|ref|YP_002280957.1| threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534796|gb|ACI54731.1| Threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 96/242 (39%), Gaps = 20/242 (8%)

Query: 492 VKAIVQQG------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT 544
           V A+ +        E V  AV  +   +  DQT FYA +GGQ GD+G     DG ++ + 
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVH-EDGGIELDQTCFYATSGGQPGDSGELERADGTKIVLG 61

Query: 545 DVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             +       V H  +E         +LVL +D+Q R +L   H+A HLL    S     
Sbjct: 62  QTKHGPSKDIVIHVPLENEPRPLVGETLVLHVDWQRRYRLMRMHTACHLLSVVCS----- 116

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D    + I   E   +   + +++ +N PV  + +  ED  A+ 
Sbjct: 117 -YPITGAAVGEEESRVDFDMVETIDKDE---VTAKLMELVGENHPVYLQWITDEDLAANP 172

Query: 664 AAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                          RV  V   +     S  CGGTHVS T E+  ++I          R
Sbjct: 173 DIVKSKNVRPPIGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENR 232

Query: 722 RI 723
           R 
Sbjct: 233 RF 234


>gi|229592029|ref|YP_002874148.1| putative alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|229363895|emb|CAY51388.1| putative alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 242

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKA--EGIF 554
           Q       ++  +  +  + T FY   GGQ GDTG   + DG R+++T   +      I 
Sbjct: 18  QNAFSARVIAVSEHGIALEHTLFYPTGGGQPGDTGHLTLADGTRVEVTGTVRDPVQRSII 77

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            H        L   + +   +D++ R Q    H+  HLL   +           G  I+ 
Sbjct: 78  WHQVEHWPEQLTAGVQVDAGLDWERRYQHMKMHTCLHLLCSII------DAPVTGCSISA 131

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED----AIASGAAALLGT 670
           D  R D    +     +  SI  ++N +I Q   V T  M   +       +   A+   
Sbjct: 132 DKGRLDFDLPEMTLDKD--SITRDLNALIEQAHAVKTLSMPASEYSTLLQITRTQAVAPP 189

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                VRV+ +   D        CGGTHV +T EI  ++           RR+
Sbjct: 190 VIQGSVRVIEIAGID-----IQPCGGTHVLNTEEIGRVFCEKIEKKSKHNRRV 237


>gi|229086195|ref|ZP_04218404.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-44]
 gi|228697114|gb|EEL49890.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cereus Rock3-44]
          Length = 240

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 17/250 (6%)

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           MN E+A              + +RVV +E      +    CGGTH   TGE+  ++I+  
Sbjct: 1   MNLEEAKQLPLRK--EPTITEDIRVVFIEN-----YDYNGCGGTHPKYTGEVGPIHIIGW 53

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRK 769
              + G+ R+  + G RA   +      +K ++  L  S+  +  +V ++     E  ++
Sbjct: 54  ERNKGGV-RLTFVAGWRALKLMGHYQHIIKDVSKQLNSSENAIPNKVTQLLTSQKENEKE 112

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
           LQ+++ K       E L   K  D    +S + +    +E+  +   + ++ ++ I   +
Sbjct: 113 LQIMNEKLLFVEANELLQQSKQTDAGTLISKVFTNRSMQEIAKLSAIITEQNENVITYFI 172

Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
            I  E K   ++   + +    N   + + +   +  G GGG P  A+ GG      ++ 
Sbjct: 173 -IENEDKLQCILACGKTVQANMN--TILKNALPAIE-GKGGGNPKSARGGGKAVITGEEF 228

Query: 889 IAGVASFLKK 898
           +A +   LK+
Sbjct: 229 LALLVHSLKE 238


>gi|323303264|gb|EGA57062.1| YNL040W-like protein [Saccharomyces cerevisiae FostersB]
          Length = 456

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 144/382 (37%), Gaps = 39/382 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +  E+    T  + E GGQ  D+G               +I        G+   H + + 
Sbjct: 43  EGYEIELQDTILFPEGGGQPSDSGFLKIVEGNRNSSKIEKILVSHVSRFGLHAKHHVNDY 102

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI---------LGSHVSQNGSCIT 613
             +    ++   +D Q R      H+  HLL   L            +G  +++    + 
Sbjct: 103 --IEPGTTVEXAVDEQKRMDYMQQHTGQHLLSAILERNYKVXTVSWSMGGIITKKKPVLE 160

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR--EDAIASGAAALLGTK 671
           P      +  ++ +T  E+ ++ D +N +I  N P    +  R  E+ +   + + +   
Sbjct: 161 PSDYFNYIELNRKLTLDEITNVSDEINQLI-INFPQEIIVEERIGEETVDEVSTSKIPDD 219

Query: 672 Y---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV-SESSIRAGIRRIEAIT 727
           Y      +R + +     G   S  C GTH+  T +I    I+ ++S++R    R+  + 
Sbjct: 220 YDLSKGVLRTIHI-----GDIDSNPCCGTHLKCTSQIGSXLILXNQSAVRGSNSRLYFMC 274

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA---KRKLQLNVE 784
           G+R   +    ++ L    + L  S+  +  ++    ++ ++L        KR  +   E
Sbjct: 275 GKRVSLYAKSVNKILLDSKNLLSCSETQISEKITRQTKQIQQLNKREQYWIKRLARTASE 334

Query: 785 DLSCHKIADVNFMSHIIS------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           +L     A     ++ +       E+  +  K V + L+   +   I+L G  ++     
Sbjct: 335 ELMNTLKASGKKRAYFMEEEYGTLELLLQIHKEVSNFLKDDTEGYEIILCGYERQTNTGS 394

Query: 839 LIVVTEDLLDRFN-AVDLARLS 859
           L++++E      N A +L  + 
Sbjct: 395 LLILSESGEKIANLAANLGSIL 416


>gi|170733637|ref|YP_001765584.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia cenocepacia
           MC0-3]
 gi|169816879|gb|ACA91462.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia cenocepacia
           MC0-3]
          Length = 243

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + Q E + +AV      +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAVGDDG--IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVSAPGQEASVATLAPGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             + +G  +T D +R D   S  I   +   +E  +   +    PV T  +  ++     
Sbjct: 124 -YAVDGCSVTADYVRLDFATSDAIDRDD---VERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVDL-----QPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|82548305|gb|ABB82995.1| putative metal-dependent hydrolase related to alanyl-tRNA
           synthetase [uncultured organism HF10_3D09]
          Length = 242

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + ++  + +V+ DQT FY   GGQ  D G   G    + + +V+ +     +HH +
Sbjct: 18  EFSAKVLAIDQNKVILDQTLFYPLGGGQNWDLGTLQGPNGEMNVIEVRGRDS---IHHTV 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   L    ++   ID++ R      H+A HL+      + G  V   G+ I  D  R 
Sbjct: 75  DDTFDLEVGDAVHGKIDFERRYAHMRMHTAQHLVSGIAYEMFGG-VRTVGNQIHTDQSRI 133

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-----AIASGAAALLGTKYND 674
           D       T   L +++++VN  I QNL V    M R +             LL +   D
Sbjct: 134 DFK-PIQFTEEMLANLQESVNHQITQNLDVTDSQMTRAEINSIMPEERTNMDLLPSFITD 192

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            +RV+++  +         C GTHV +  EI  +    + S   G +R+   
Sbjct: 193 -LRVITIGDKQ----DLCPCAGTHVRNISEIKGIEFTGKKSKGKGTQRVTYK 239


>gi|115352367|ref|YP_774206.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia ambifaria AMMD]
 gi|115282355|gb|ABI87872.1| Ala-tRNA(Pro) hydrolase [Burkholderia ambifaria AMMD]
          Length = 243

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + Q + V  AV      +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDG--IRLDRTVFYPLGGGQAGDTGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+Q R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
               +G  +T D +R D   S  I  A+   +E  + ++++    V T  +   +     
Sbjct: 124 -YPVDGCSVTSDYVRLDFATSDAIDRAD---VERRLAELVSGAHAVTTEWITDAEMTERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +   D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIAGVDL-----QPCGGTHVRNTSEIGDLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRV 238


>gi|254462531|ref|ZP_05075947.1| alanyl-transfer RNA synthetase domain protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206679120|gb|EDZ43607.1| alanyl-transfer RNA synthetase domain protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 242

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 17/238 (7%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A ++ GE +    + +   V+ DQ+ FYA  GGQ GD+G  + +   L I    K     
Sbjct: 10  AYLRDGEALVLGHTPEGG-VILDQSIFYATGGGQPGDSGMMMWNDNHLPIATCVKVKGRE 68

Query: 554 FVHHAIVERGIL---RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
               A+V    +        + L++D++ R      H+A HLL   +S      +  +G 
Sbjct: 69  DTQLALVPAEPVQLPPVGTQVSLSLDWERRHSHMRVHTALHLLSVVIS------LPVSGG 122

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAA 666
            I+    R D    +     +  ++E ++N +I  +  V    ++ E+  A+       +
Sbjct: 123 SISVGKGRLDFDMPEA--PEDKDALEASLNRLIELDYVVSEGWISEEELRANPTLVKTMS 180

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +     + RVR+V +  +D        CGGTHV+ T EI  + +          RR+ 
Sbjct: 181 VQPPMGSGRVRLVRIG-DDTRQIDLQPCGGTHVARTSEIGRVRLGKVEKKGKLNRRVY 237


>gi|225712852|gb|ACO12272.1| Alanyl-tRNA synthetase domain-containing protein 1-B
           [Lepeophtheirus salmonis]
          Length = 416

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 143/392 (36%), Gaps = 36/392 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + +IV  + +   ++V  + T  + E GGQ  DTG         ++ +V ++      H+
Sbjct: 14  ETKIVALSENEPYLKVELEDTILFPEGGGQNYDTGFI----GSHRVVNVFREGRKAI-HY 68

Query: 558 AIVERG----ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC-- 611
             V        L     + L +D+  R      H+  HLL   L T LG           
Sbjct: 69  VEVSSKENDAPLVPNDLVRLKVDWDRRFDNMQQHTGQHLLSAVLETKLGLKTKSWWMAEN 128

Query: 612 ----ITPDGLRFDVTHSKPITS-AELKSIEDNVNDIIAQNLPV--VTRIMNREDAIASGA 664
               +    +  ++     + + ++++ +E   N  I   LPV   T  +   +   + +
Sbjct: 129 SIEEVGQSYIELELMDGHKVPTNSDIQVVEQEANQYIRDQLPVSITTHKLGDPELEKAYS 188

Query: 665 AALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             L      D  +R+V++      +    +C GTHV +   + ++  +     +     +
Sbjct: 189 RGLPEDLPKDALIRIVNI------LEDRNMCCGTHVQNLAHLQIIKTLQFQKSKKTTEFV 242

Query: 724 -EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
              I G+R   ++     +   L + LK    +    +E+     +  + I++    +L 
Sbjct: 243 LYFIVGKRVERYIDICFNRELQLTNLLKNRPLDHYSLIEKALTSCKNTKKINSNLLKELA 302

Query: 783 VEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQ-KKIQSGIIMLVGISKEKKAS 837
           +      K+ +++ +   I     E  S+ + + +  L   K  +  I L+  + E    
Sbjct: 303 L--FEAEKVKNMDPLPKYIIDHRKEGSSEYIGTFIKELTSDKGLNLFIFLIVGNGESGNP 360

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
             + +  D  D      L     + L G GGG
Sbjct: 361 YQLALFGDPQDIKK---LGSKICEYLDGKGGG 389


>gi|126737580|ref|ZP_01753310.1| hypothetical protein RSK20926_18102 [Roseobacter sp. SK209-2-6]
 gi|126720973|gb|EBA17677.1| hypothetical protein RSK20926_18102 [Roseobacter sp. SK209-2-6]
          Length = 249

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 14/235 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A +++      A  G+   ++ +Q+ FY   GGQ GD G     G    + +  K AEG 
Sbjct: 20  AYLKEATSKVVAHEGEGG-LLLEQSLFYPTGGGQPGDAGRLTWQGGSCDVINTVKSAEGH 78

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +      + +      +   +D+  R      H+A HLL   +       +  +G  I 
Sbjct: 79  PLLLIAEGQDLPPVGAEVQQELDWARRYGHMRVHTALHLLSVVIP------LEVSGGSIA 132

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLG 669
               R D    +     + +++++ +  +I Q+L V    +   +  A+       ++  
Sbjct: 133 AAKGRLDFNMPEA--PEDKEALQEALQALIDQDLEVSESWITDAELDANPQLVKTMSVSP 190

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            + + RVR+V +   D        CGGTHV  TGEI  + +          RR+ 
Sbjct: 191 PRGSGRVRLVRIG-TDAEQIDLQPCGGTHVKRTGEIGKIRLGKVEKKGRQNRRVY 244


>gi|206560731|ref|YP_002231496.1| putative alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|198036773|emb|CAR52673.1| putative alanyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 243

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + Q E + +AV      +  D+T FY   GGQ GDTG   + DG  + I D +K K +
Sbjct: 11  AYLTQCEAIVQAVGDDG--IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPDQEASVATLAPGTRVVAAIDWLRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             + +G  +T D +R D   S  I   +   +E  +   +    PV T  +  ++     
Sbjct: 124 -YAVDGCSVTADYVRLDFATSDAIDRDD---VERRLAGFVVGAHPVTTEWITDDEMAERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +E  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIENVDL-----QPCGGTHVRNTSEIGGLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRL 238


>gi|328543630|ref|YP_004303739.1| Alanyl-transfer RNA synthetase domain protein [Polymorphum gilvum
           SL003B-26A1]
 gi|326413374|gb|ADZ70437.1| Alanyl-transfer RNA synthetase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 238

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 88/221 (39%), Gaps = 18/221 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVE-RGILR 566
            +  +V D+T FYA  GGQ GD+G     DG R+ IT      +   + H   +   +  
Sbjct: 24  DRGGIVLDRTVFYASGGGQPGDSGYLEREDGSRIAITTTVYDNDRTTIVHVPADGEAMPA 83

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++V  +D+  R +L   H+A HLL   L           G  I     R D    + 
Sbjct: 84  PGETVVAHLDWARRYRLMRMHTALHLLSVVLP------YPVTGGQIGDPEGRLDFDIPEA 137

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVE 682
               +  ++   +N + A +  V T  +   +  A+       ++   + + RVR+V + 
Sbjct: 138 DF--DRDALTARLNALAAGDHAVTTEWITDAELDANPGLVKTMSVKPPRGSGRVRLVRI- 194

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              G       CGGTHVS T EI  L I          RR+
Sbjct: 195 ---GTDVDLQPCGGTHVSRTSEIGPLSIGKIEKKGRQNRRV 232


>gi|167836018|ref|ZP_02462901.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 243

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAEGIF----VHHA 558
             +  +  +  D+T FY   GGQ GDTG   +  G  L + D +K + +G      VH  
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGATLAVADTRKARFDGATPDDAVHVL 79

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
              +  L    R   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVRPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           D +R D    +PI       +E  + +++    PV T  +  ++  A        ++   
Sbjct: 134 DYVRIDFATVEPIDRE---LVEARLAELVGGAHPVTTEWITDDEMAARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVHNTAEIGALRVAKLEKKSARTRRL 238


>gi|315230057|ref|YP_004070493.1| alanyl-tRNA synthetase domain-containing protein [Thermococcus
           barophilus MP]
 gi|315183085|gb|ADT83270.1| alanyl-tRNA synthetase domain protein [Thermococcus barophilus MP]
          Length = 214

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + V  +   ++ DQT FY   GGQ  D G   G    + + DV K  EG  V H 
Sbjct: 13  KEAKAKVVEIKDNALLLDQTIFYPTGGGQPHDRGTING----VHVLDVYKDEEG-NVWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           + E    R    + L ID+  R +L   H+A HLL H L+ +LG    Q  GS ++ +  
Sbjct: 68  VEEPEKFRIGDEVELKIDWDYRYKLMRIHTAMHLLDHVLNEVLGKDKWQLYGSGMSVEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +   + + IE   N  + +   V                   G K   ++R
Sbjct: 128 RYDILYPENVNKYKEQIIE-RFNKYVDEGGEVKIWW--------------EGEKRLTQIR 172

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                           CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 173 ----------DFEVLPCGGTHVKDIREIGHIKKLKRSSIGKGKQRLE 209


>gi|172061237|ref|YP_001808889.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MC40-6]
 gi|171993754|gb|ACB64673.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria MC40-6]
          Length = 243

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + Q + V  AV      +  D+T FY   GGQ GD+G   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDG--IRLDRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+Q R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWQRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
               +G  +T D +R D   S  I  A+   +E  + ++++    V T  +   +     
Sbjct: 124 -YPVDGCSVTADYVRLDFATSDAIDRAD---VERRLAELVSGAHAVTTEWITDAEMTERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +   D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIAGVDL-----QPCGGTHVRNTSEIGDLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRV 238


>gi|306840537|ref|ZP_07473296.1| alanyl-tRNA synthetase [Brucella sp. BO2]
 gi|306289552|gb|EFM60770.1| alanyl-tRNA synthetase [Brucella sp. BO2]
          Length = 247

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 13/223 (5%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQI-TDVQKKAEGIFVHHAIVER 562
           A++G    ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     +
Sbjct: 24  AIAGNGG-IILDRTNFYATSGGQPGDTGFFERVDGSRIEIATTVTGETKNEIVHMPAQGQ 82

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      LVL ID+Q R +L   H+A HLL      +    ++  G+ +  D  R D  
Sbjct: 83  QMPDVGEKLVLHIDWQRRYKLMRMHTACHLLS----VVCPFPIT--GAAVGEDESRVDFD 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVS 680
                 + E  S+ + + +++  N PV    ++ E+ +A+                R+  
Sbjct: 137 LPDQSYTKE--SVTEKLMELVQANAPVSIHWISDEEFLANPDIVKSKNVRPPVGLGRIRL 194

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V   + G   S  CGGTHV  T E+  ++I          RR 
Sbjct: 195 VAIGENGSVDSQPCGGTHVCETQEVGEIHIGKIEKKGKENRRF 237


>gi|256844889|ref|ZP_05550347.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_36A2]
 gi|256718448|gb|EEU32003.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_36A2]
          Length = 375

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 111/279 (39%), Gaps = 25/279 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G        + I +V++    + +    +E G           I
Sbjct: 20  NSPFYVDGKGGQLGDRGTISD----VNIVEVKE---NLVILDKNLEDG------EYTYFI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +   H+A H+         G  ++  G  +  +    D+   K I+   +  +
Sbjct: 67  DEKRREDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKEIIDKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E+ VN+ I  ++ V   I   E+A         +  K    VR + +     G      C
Sbjct: 124 EELVNNDIKTDIVVEEEIYTNEEAHKIENLRKAIKDKIKGDVRFIKI-----GDIDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HVS T +I +  I++  +I+    R   + G+RA++    + + +K L +       
Sbjct: 179 AGFHVSRTSQIEIFKIINYENIKGNYTRFYFLAGERAKADYNKKHDIIKKLTNIFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            ++  +++   E  K+++    + L +   +L      +
Sbjct: 239 EILEMLDKSLTE--KVKVSTELKSLSMKYAELMVKDFEN 275


>gi|289450372|ref|YP_003474769.1| threonine/alanine tRNA ligase second additional domain-containing
           protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184919|gb|ADC91344.1| threonine/alanine tRNA ligase second additional domain protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 535

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 133/451 (29%), Gaps = 95/451 (21%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT------------------------ 544
               V+  +T F+   GGQ  D G    D  +++I                         
Sbjct: 40  NGWYVLLTRTNFFPGGGGQPADRGWLCFDDKKIKILAAESVRLGRDNCSTDSSCSYDRDN 99

Query: 545 ------DVQKKAEGIFVHHAI------------VERGILRTEMSLVLTIDYQNRRQLSIN 586
                 D +K                       V         ++ L ID+Q R      
Sbjct: 100 APANGSDCEKLDPAENDLTTAYLLPQSFLTELGVTSEKSLLGRAVDLEIDWQRRYDFMQQ 159

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HL         G      G  ++   +  D+  +K +   +L+ +E   N I+ + 
Sbjct: 160 HSAEHLFSGLAKREFGC--DNVGFHLSETVMTMDL--NKNLGEKDLQKLERAANAIVWER 215

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                 +    D I              +VR++ +   D        C G HV++T EI 
Sbjct: 216 RATKATVYPSVDVIEIDFRQ--KKALPGKVRILEIPGAD-----CCACCGLHVANTVEIG 268

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IW 764
           ++ ++S    R GI R+    GQR   HL  + E L  +      +  N+  ++    I 
Sbjct: 269 MVKVLSAEKHRGGI-RVFLAAGQRLYDHLSREHEILAEICRQYSANLTNLKDKLAAVAIK 327

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKI--------------------------------- 791
            E  + QL+  K +    +  +S  +                                  
Sbjct: 328 GETAEKQLVQIKERELETLAQVSRRQAVAVLRAAAAEARSVVGETTNEVVNEKPRIFLLT 387

Query: 792 ----ADVNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
                     + I+ + V   +L+  ++         ++       +     +     D 
Sbjct: 388 RRGSGGSCGAAVILPTGVAPGDLRRAINIFSAAGFEFVLAGCHPDAQTLVYSIAGGNGDA 447

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
             + +  +  ++  K      GGGR    Q 
Sbjct: 448 TAKIDFTEWQKVL-KRRFDAKGGGRADYVQG 477


>gi|15897381|ref|NP_341986.1| hypothetical protein SSO0450 [Sulfolobus solfataricus P2]
 gi|284173278|ref|ZP_06387247.1| hypothetical protein Ssol98_01285 [Sulfolobus solfataricus 98/2]
 gi|74557376|sp|Q97ZX2|ALAXM_SULSO RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|13813606|gb|AAK40776.1| Alanyl-tRNA synthetase truncated homolog (alaS-like1) [Sulfolobus
           solfataricus P2]
 gi|261602058|gb|ACX91661.1| Alanyl-tRNA synthetase, class IIc-like protein [Sulfolobus
           solfataricus 98/2]
          Length = 236

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 9/228 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHH 557
            E     V  +   V+ D+T FY   GG   DTG  + + G R+ +T+V++   G  +H 
Sbjct: 13  KEFEGRVVRIEGNYVILDKTAFYPGGGGLDNDTGFLVNEKGERISVTEVKRGENGEILHK 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I + G L     ++ TID+  R ++   H+A+H++        G+ ++  G  I+P+  
Sbjct: 73  -IDQNGSLNVNEKVIGTIDWDRRYRMMRLHTASHIVAALAYRKFGALIT--GGHISPEQA 129

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + D           L  + +  N+II +++ +    + RE+A+   A   L  +   ++ 
Sbjct: 130 KDDFNVE---NKDTLIELINEANEIIKKDIELKIYFLPREEALMIPAIVKLAGRNPPQIP 186

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  +    G        GG HV +T EI  + ++   +   G +R+  
Sbjct: 187 IWRIVEIPG--IDIQADGGPHVKNTKEIGEIVLLKVENKGKGRKRVYY 232


>gi|218674822|ref|ZP_03524491.1| alanyl-tRNA synthetase protein [Rhizobium etli GR56]
          Length = 245

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 96/242 (39%), Gaps = 20/242 (8%)

Query: 492 VKAIVQQG------EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT 544
           V A+ +        E V  AV      +  DQT FYA +GGQ GDTG     DG ++ + 
Sbjct: 3   VNALYRDDFYLSTCEAVVTAVHDDGG-IELDQTCFYAASGGQPGDTGQLERADGSKIGLG 61

Query: 545 DVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             +  A    + H  ++         +LVL +D+  R +L   H+A HLL    S     
Sbjct: 62  QTKHGASKDIIIHVPLDNAPQPEIGETLVLHVDWPRRYRLMRMHTACHLLSVVCS----- 116

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G+ +  +  R D   S+ I   E   +   + +++ QN PV  + +  ++  A+ 
Sbjct: 117 -YPITGAAVGEEESRIDFDMSETIDKDE---VTARLMELVGQNHPVYLQWITDDELAANP 172

Query: 664 AAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                          RV  V   +     S  CGGTHVS T E+  ++I          R
Sbjct: 173 DIVKSKNVRPPIGLGRVSLVCIGENSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGKENR 232

Query: 722 RI 723
           R 
Sbjct: 233 RF 234


>gi|160914445|ref|ZP_02076660.1| hypothetical protein EUBDOL_00449 [Eubacterium dolichum DSM 3991]
 gi|158433603|gb|EDP11892.1| hypothetical protein EUBDOL_00449 [Eubacterium dolichum DSM 3991]
          Length = 385

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 138/385 (35%), Gaps = 33/385 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
              +V+              T FY E GG   D G          +    K  +G   H 
Sbjct: 15  NTSVVKVVEENGMYWHACKDTIFYKEGGGMASDIGMIND-----HLVQDLKLEDGYMWHL 69

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                   + E ++ ++++   R +    H+A HL+   +  +       +      + +
Sbjct: 70  LD-----EKLEGTVTMSVNLHERFRKCQIHTAQHLISALMQNVYKVKTLAHHVGDEENDV 124

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRV 676
            FD+       + EL+      N +I  +L V  +     +A       + G   N D +
Sbjct: 125 EFDLKDFNEKMAFELQ---VLCNGLIRDDLAVTIQYPTPSEAKKH----VSGKDVNRDDL 177

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
           RVV +     G     LCG  HV S   + +LYI        G  +I  I G +      
Sbjct: 178 RVVRI-----GTLDYNLCGCMHVPSLRYLQMLYISGFEKTTKGY-KIRYIVGDQLLDCTS 231

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADV 794
            + + L  ++  L V     V  V  +  E R+L   ++  K+K    +        +DV
Sbjct: 232 KRYKVLDEVSQTLAVPHLYAVTGVHRVINENRQLNRNVLVWKQKYYEMLAKELIKDHSDV 291

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             + H   ++D++ L  +   + K     ++    I      +V IVV       F+A +
Sbjct: 292 --VVHCFDDIDARSLSMMAQYVVKNYHKNVVFAAKIYD----NVHIVVASGDTASFDAKE 345

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGG 879
           +    A+     GGG R  MAQ GG
Sbjct: 346 VFAQFAEQYHLKGGGNRA-MAQGGG 369


>gi|241662530|ref|YP_002980890.1| threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12D]
 gi|240864557|gb|ACS62218.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12D]
          Length = 239

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 16/220 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTE 568
           +  D T FYA +GGQ GDTG  +  DG  + I D     +   V H   +     +L   
Sbjct: 28  IELDATVFYARSGGQAGDTGTLVLADGTTMAIADTVYSPDRQTVLHVPADNAGLTLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++  TID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  TAVTATIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +  ++   +N++I +N PV   ++  E+ A        +G         + + + DG 
Sbjct: 142 --DRDTLTAQLNELIGRNTPVRIDLITPEELAAQPELVRTIGAAPPAGTSAIRIIHIDG- 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                 CGGTHV +TGEI  + +          RR+ A+ 
Sbjct: 199 -IDRQPCGGTHVRATGEIGRVIVTKIEKKSRQNRRV-AVA 236


>gi|206895152|ref|YP_002247625.1| alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737769|gb|ACI16847.1| alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS), putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 346

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/306 (20%), Positives = 117/306 (38%), Gaps = 23/306 (7%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y   GGQ  D     G G  ++  +  K+  G F     +   + +TE+ + + ID   R
Sbjct: 22  YEGGGGQPADRIKVKGPGFYIESDEAFKEKGGTFWKVRSISGEVPKTEVEVDVVIDELWR 81

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            ++S  H+A H+       + G      G  I  D  + ++  +      +   +E  VN
Sbjct: 82  LEVSQQHTAQHIFSALAEQLYGWP--SEGFAIFDDESKIELLGADED-PEKYAQLERQVN 138

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           ++I + +PV   +    D            K+ D      VE E         CGGTHV+
Sbjct: 139 EVILRQIPVRVYVTEEVDEKLR--------KHTDYEHPRIVEIEG---IDKCACGGTHVT 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG +    I+          R+    G R         E+ + L + L    G+V  RV
Sbjct: 188 NTGYVGGFAILKVERKNTRYVRVIFAAGIRLARIAKNYIEREQKLKNLL---TGDVEERV 244

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            ++ E+ ++L+L        + V+     ++   N        +D + +K +     +K 
Sbjct: 245 FQLLEQKKQLELEKKNLLELVKVQIAQSDEVFWKNL------PLDMQSMKQIAAYCNEKD 298

Query: 821 QSGIIM 826
           +  +++
Sbjct: 299 KDIVLV 304


>gi|307942358|ref|ZP_07657709.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307774644|gb|EFO33854.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 240

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 21/232 (9%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVH 556
             E+V+      +  ++ D+T FYA  GGQ GDTG    DG  RL I      ++   + 
Sbjct: 18  DAEVVDI---NDRGGLILDRTIFYATGGGQPGDTGYLELDGGERLDIAATVYDSDRTTII 74

Query: 557 HAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H  VE   L      +V  +D+Q R  +   H+A HLL  AL           G  I+  
Sbjct: 75  HVPVEGSPLPEIGAKVVAHLDWQRRYHMMRVHTALHLLSVALP------FPVTGGQISEG 128

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTK 671
             R D          E   I+  + D++A +  V T  +  E+  A        ++   +
Sbjct: 129 EGRLDFDMGDTQLDKE--DIKARLADLVAGDHEVTTEWITDEELDAKPDLVKTMSVKPPR 186

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            + RVR+V +    G       CGGTHV+ T EI  + +          RR+
Sbjct: 187 GSGRVRLVRI----GADVDLQPCGGTHVTRTSEIGTVELGKSEKKGKQNRRV 234


>gi|187927944|ref|YP_001898431.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12J]
 gi|187724834|gb|ACD25999.1| Threonyl/alanyl tRNA synthetase SAD [Ralstonia pickettii 12J]
          Length = 239

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 20/235 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVH 556
              +V     G    +  D T FYA +GGQ GDTG  +  DG  ++I D     +   V 
Sbjct: 17  DATVVAVHSEG----IELDATVFYARSGGQAGDTGTLVLADGTTIRIADTVYSPDRQTVL 72

Query: 557 HAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           H   +     +L    ++  TID+  R +L   H+  HLL   +       V   G  I+
Sbjct: 73  HVPADNAGLTLLAPGTAVTATIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGIS 126

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKY 672
           PD  R D    +     +  ++   +N++I +N PV   ++  E+ A        +G   
Sbjct: 127 PDAGRIDFDLPESTL--DRDTLTTQLNELIGRNTPVRIDLITPEELAAQPELVRTIGAAP 184

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                 + + + DG       CGGTHV +TGEI  + +          RR+ A+ 
Sbjct: 185 PAGASAIRIIHIDG--IDRQPCGGTHVRATGEIGRVIVTKIEKKSRQNRRV-AVA 236


>gi|332158282|ref|YP_004423561.1| alanyl-tRNA synthetase-related protein [Pyrococcus sp. NA2]
 gi|331033745|gb|AEC51557.1| alanyl-tRNA synthetase-related protein [Pyrococcus sp. NA2]
          Length = 213

 Score =  135 bits (339), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 31/228 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + V  +  +++ DQT FY   GGQ  D G   G    +++ DV K  +G  V H 
Sbjct: 13  KEAKAKVVEIRDNDLLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEQG-NVWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           + E    +    + L ID+  R +L   H+  HLL H L+ +LG    Q  GS ++ +  
Sbjct: 68  VKEPEKFKVGDEVELKIDWDYRYRLMRIHTGLHLLEHVLNEVLGEGKWQLVGSGMSVEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +   + + IE   N  + +   V                           R
Sbjct: 128 RYDIAYPENLNKYKDQIIE-LFNKYVDEGGEVKIWW-------------------EGETR 167

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                Y          CGGTHV    E+  +  +  SSI  G +R+E 
Sbjct: 168 -----YTQIRDFEVIPCGGTHVRDIKEVGHIKKLKRSSIGRGKQRLEM 210


>gi|300681550|emb|CBH32647.1| alanyl-tRNA synthetase, putative, expressed [Triticum aestivum]
          Length = 256

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 18/228 (7%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVER 562
             G +  VV D T F+ + GGQ  DTG  +   G G R  + DV+ K +G+  H+   E 
Sbjct: 31  EEGGRRAVVLDATVFHPQGGGQPADTGAIVSAAGTGARFLVEDVRVK-DGVVFHYGRFED 89

Query: 563 ----GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L    S+ L ID + R+  S  HSA HLL   ++ + G H+        PDG  
Sbjct: 90  AAAGEELSQGQSVSLEIDAERRKLNSRLHSAGHLLDSCMTNL-GLHLEPGKGYHFPDGPS 148

Query: 619 FDVTHSKPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-R 675
            +     P    + K I  E   N++I++   V+  +   E+A      AL      D  
Sbjct: 149 VEYKGVVPADQLQDKKIQLEKEANELISKGSKVLVSVFPYEEAAKLCGGALPSYIPQDST 208

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            R+V       G +    CGGTHV+   +I  L + +   ++ G+ ++
Sbjct: 209 PRIVKF-----GNYPGCPCGGTHVADIADIGNLKVTN-IRVKKGVTKV 250


>gi|170702117|ref|ZP_02893028.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria
           IOP40-10]
 gi|170132966|gb|EDT01383.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ambifaria
           IOP40-10]
          Length = 243

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 95/244 (38%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + Q + V  AV      +  D+T FY   GGQ GD+G   + DG  + I D +K K +
Sbjct: 11  AYLTQCDAVVAAVGDDG--IRLDRTVFYPLGGGQAGDSGMLTLPDGGTIAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +V  ID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQEARVAALAPGARVVAGIDWLRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
               +G  +T D +R D   S  I  A+   +E  + +++     V T  +   +     
Sbjct: 124 -YPVDGCSVTADYVRLDFATSDAIDRAD---VERRLAELVRGAHAVTTEWITDAEMTERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +   D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIAGVDL-----QPCGGTHVHNTSEIGDLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRV 238


>gi|121596140|ref|YP_988036.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Acidovorax sp. JS42]
 gi|120608220|gb|ABM43960.1| Ala-tRNA(Pro) hydrolase [Acidovorax sp. JS42]
          Length = 250

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 24/229 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQK------KAEGIFVHHAIVER 562
           +  VV D+T FY   GGQ GD G  +  DG  L I D +K      +     VH     +
Sbjct: 25  EGGVVLDRTVFYPLGGGQAGDAGVLLRPDGTALAIADTRKGKDAEGRPTADIVHVPAPGQ 84

Query: 563 GI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            + L    ++   ID++ R +L   H+ THLL H ++         NG  ITPD  R D 
Sbjct: 85  ALGLAVGDAVTARIDWERRHRLMRFHTTTHLLCHIVAQ------PVNGCSITPDYARLDF 138

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVR 677
                +    L +    +  ++AQ+  V    ++     A+       ++   +    VR
Sbjct: 139 HMDGALDKDALTAA---IARLVAQDHAVTIGAISDAALDANPQLVKSMSVQPPRGTGTVR 195

Query: 678 VVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V V     G         CGGTHV+ TGEI  + +       A  RR+
Sbjct: 196 TVRVGGACDGDAAQIDLQPCGGTHVARTGEIGAVVVTKIEKKGAMSRRV 244


>gi|237738437|ref|ZP_04568918.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229420317|gb|EEO35364.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 371

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 110/279 (39%), Gaps = 22/279 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           E+  +G  VEV      +    GGQLGD G         QI +V++          +V  
Sbjct: 9   EKIKNGYLVEVEPKDILYIDGKGGQLGDRGKIE----EAQILEVKES--------GVVVD 56

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L       + IDY  +  ++  H+A H+            ++  G  +  +    D+ 
Sbjct: 57  RELEYG-EYEVKIDYIRQEDIACQHTAQHMFSAIAYN--DYKLNTVGFRMAEEYTTVDLD 113

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681
            ++ IT   ++ +E   N++I + + +   IMN E+A    G    +  K    VR V +
Sbjct: 114 SNE-ITEEVIEELERKANEVIKKAIQLKIFIMNNEEARKIEGLRKAIKEKVVGDVRFVEI 172

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
              D G      C G HV +T +I L  I++   I+    R   + G+RA      + + 
Sbjct: 173 PGVDLG-----ACAGFHVENTKDIQLFKIINHEKIKGNYIRFYFLAGERALKDYSFKHKL 227

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
            K L          ++  +++  +E +K++  +     Q
Sbjct: 228 SKDLCHVFSCKDYEIMEMLDKTLDEKKKIESEYKNLASQ 266


>gi|254504439|ref|ZP_05116590.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222440510|gb|EEE47189.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 238

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 91/227 (40%), Gaps = 18/227 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVE 561
           +  V  ++  +V D+T FYA  GGQ GDTG   + DG R+ I      A+   + H   E
Sbjct: 18  DVVVVNERGGIVLDRTVFYATGGGQPGDTGYLELEDGTRIDIATTVYDADKKTIVHVPAE 77

Query: 562 RGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              L T    L   ID+  R +L   H+A HLL  AL           G  I     R D
Sbjct: 78  EQTLPTPGTKLTAHIDWARRYRLMRMHTALHLLSVALP------FPVTGGQIGDGEGRLD 131

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRV 676
                     E   +   +N++   +  V +  ++ E+  A+       ++   +   RV
Sbjct: 132 FDMGDTALDKE--KVAAALNELAGGDHDVASEWISDEELDANPGLVKTMSVQPPRGAGRV 189

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R+V +    G       CGGTHVS T EI  L +          RR+
Sbjct: 190 RLVRI----GRDIDLQPCGGTHVSRTSEIGPLELGKSEKKGKQNRRV 232


>gi|262066380|ref|ZP_06025992.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291379945|gb|EFE87463.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 375

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 110/279 (39%), Gaps = 25/279 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G          I +V++    I +    +E G          +I
Sbjct: 20  NSPFYVDGKGGQLGDRGTI----AEANIVEVKE---NIVILDKNLEDG------EYTYSI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + +  +   H+A H+         G  ++  G  +  +    D+   K I+   ++ +
Sbjct: 67  DEKRQEDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKETIEKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E+ VN+ I  ++ V   I   EDA         +  K    VR + +     G      C
Sbjct: 124 EELVNNDIKADILVEEEIYTNEDAHKIENLRKTIKEKIKGDVRFIKI-----GDVDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HV+ T EI +  I++  +I+    R   + G RA++    + + +K L +       
Sbjct: 179 AGFHVARTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYNKKHDIIKKLTNTFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            ++  +++  +E  K  +    + L +   +L      +
Sbjct: 239 EILEMLDKALKE--KASVTAELKSLGMRYAELMVKDFEN 275


>gi|134296462|ref|YP_001120197.1| metal-dependent hydrolase-like protein [Burkholderia vietnamiensis
           G4]
 gi|134139619|gb|ABO55362.1| Ala-tRNA(Pro) hydrolase [Burkholderia vietnamiensis G4]
          Length = 243

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 93/244 (38%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A + + E V  AV      +  D+T FY   GGQ GD G   + DG  + I D  K + +
Sbjct: 11  AYLTRCEAVVAAVGDDG--IRLDRTVFYPLGGGQAGDAGTLTLPDGGTIAIADTHKARFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             LR    +V  ID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQEARIAALRPGARVVADIDWARRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
               +G  +T D +R D   S  I   E   +E  +  ++     V T  +   +     
Sbjct: 124 -YPVDGCSVTADYVRLDFATSDAI---ERADVEQRLAALVHGAHAVTTEWITDAEMAERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ +E  D        CGGTHV +T E+  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEVGALRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRV 238


>gi|254719126|ref|ZP_05180937.1| Alanyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984121|ref|ZP_06096856.1| threonyl/alanyl tRNA synthetase SAD [Brucella sp. 83/13]
 gi|306838411|ref|ZP_07471256.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662713|gb|EEZ32974.1| threonyl/alanyl tRNA synthetase SAD [Brucella sp. 83/13]
 gi|306406551|gb|EFM62785.1| alanyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 247

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 13/223 (5%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQI-TDVQKKAEGIFVHHAIVER 562
           A++G    ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     +
Sbjct: 24  AIAGNGG-IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQ 82

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +      LVL ID+Q+R +L   H+A HLL      +    ++  G+ +  D  R D  
Sbjct: 83  QMPDVGEKLVLHIDWQHRYKLMRMHTACHLLS----VVCPFPIT--GAVVGEDESRVDFD 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVS 680
                 + E  S+ + + +++  N PV    ++ E+ +A+                R+  
Sbjct: 137 LPDQSYTKE--SVTEKLMELVRANAPVSIHWISDEEFLANPDIVKSKNVRPPVGLGRIRL 194

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V   + G   S  CGGTHV  T E+  ++I          RR 
Sbjct: 195 VAIGENGSVDSQPCGGTHVCETQEVGEIHIGKIEKKGKENRRF 237


>gi|83951321|ref|ZP_00960053.1| Alanyl-transfer RNA synthetase domain protein [Roseovarius
           nubinhibens ISM]
 gi|83836327|gb|EAP75624.1| Alanyl-transfer RNA synthetase domain protein [Roseovarius
           nubinhibens ISM]
          Length = 238

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 13/219 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V DQT FY   GGQ GD+G    D   + I    +      V      R +     
Sbjct: 25  EGGIVLDQTVFYPAGGGQPGDSGRLSWDRSEMTIATAVRGEGDQVVLVPAEPRRLPPVGA 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            L   ID++ R +    H+A H+L   +       +   G  +     R D    +   S
Sbjct: 85  HLEQRIDWERRHRHMRMHTALHILSVVIP------LPVVGGAVGDGRGRLDFDMGEA--S 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNR----EDAIASGAAALLGTKYNDRVRVVSVEYED 685
           A+++++E+ +N+ + ++LPV    + +    E+         +  +  DRVR+V +    
Sbjct: 137 ADVETLEELLNEAVDRDLPVEEEWITQTALAENPQLIKTVGAMPPRGVDRVRLVRIG-TG 195

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           G       CGGTHV+ TGEI  L I    S     RR+ 
Sbjct: 196 GDQIDLQPCGGTHVARTGEIGHLRISRIESRGRRTRRVT 234


>gi|218883373|ref|YP_002427755.1| Threonyl/alanyl tRNA synthetase [Desulfurococcus kamchatkensis
           1221n]
 gi|218764989|gb|ACL10388.1| Threonyl/alanyl tRNA synthetase [Desulfurococcus kamchatkensis
           1221n]
          Length = 235

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHH 557
            E +    + +   V  D+T F+  +GG   DTG  + +   +++ +V   K  G   H 
Sbjct: 9   KEYMATIKAIKGSRVFLDKTIFHPRSGGVENDTGYMVFNEGMVRVVNVYYDKESGDVAHE 68

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 + +   S+ L +D++ R +L   H+A H+L   + T   + ++  G  ITP+  
Sbjct: 69  VDNASLLPQPGSSVKLVLDWERRYRLMRLHTAAHILSAIMYTNYNALIT--GGNITPEYG 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---D 674
             D + ++  +    +      N+++A+N+ V    + RE+A+       L +K     +
Sbjct: 127 YDDYSLTE-FSREIFEEAVKKANEVVARNIEVKIYWLPREEALRIPGVVKLASKMPPEVE 185

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++R+V +   D         GG HV STGEI ++ ++   +     +R+  
Sbjct: 186 KLRIVEIPGVD-----IQADGGPHVKSTGEIGVIKLLRVENKGKNKKRLYF 231


>gi|222112295|ref|YP_002554559.1| threonyl/alanyl tRNA synthetase sad [Acidovorax ebreus TPSY]
 gi|221731739|gb|ACM34559.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax ebreus TPSY]
          Length = 250

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 24/229 (10%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQK------KAEGIFVHHAIVER 562
           +  VV D+T FY   GGQ GD G  +  DG  L I D +K      +     VH     +
Sbjct: 25  EGGVVLDRTVFYPLGGGQAGDAGVLLRPDGSALAIADTRKGKDAEGRPTADIVHVPAPGQ 84

Query: 563 GI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            + L    ++   ID++ R +L   H+ THLL H ++         NG  ITPD  R D 
Sbjct: 85  ALGLAVGDAVTARIDWERRHRLMRFHTTTHLLCHIVAQ------PVNGCSITPDYARLDF 138

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVR 677
                +    L +    +  ++AQ+  V    ++     A+       ++   +    VR
Sbjct: 139 HMDGALDKDALTAA---IARLVAQDHAVTIGAISDAALDANPQLVKSMSVQPPRGTGTVR 195

Query: 678 VVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V V     G         CGGTHV+ TGEI  + +       A  RR+
Sbjct: 196 TVRVGGACDGDAAQIDLQPCGGTHVARTGEIGAVVVTKIEKKGAMSRRV 244


>gi|256026776|ref|ZP_05440610.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289764772|ref|ZP_06524150.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289716327|gb|EFD80339.1| alanyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 375

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 111/285 (38%), Gaps = 24/285 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           + + V       K   +   +PFY +  GGQLGD G    D   +++ +       + + 
Sbjct: 2   ENKKVNIKKISDKTYEIL-NSPFYIDGKGGQLGDRGTI-SDANIIEVKE------NLVIL 53

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              +E G           ID + R  +S  H+A H+         G  ++  G  +  + 
Sbjct: 54  DKNLEDG------EYTYFIDEKRREDISQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEY 105

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR 675
              D+   K I+   +  +E+ VN+ I +++ V   I   E+A         +  K    
Sbjct: 106 TTVDLD-QKDISKEIIDKLEELVNNDIKKDIIVEEEIYTNEEAHKIENLRKAIKDKIKGD 164

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR + +     G      C G HVS T +I +  I++  +++    R   + G+RA++  
Sbjct: 165 VRFIKI-----GDIDICACAGFHVSRTSQIEIFKIINYENVKGNYTRFYFLAGERAKADY 219

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
             + + +K L +        ++  +++   E  K+        ++
Sbjct: 220 NKKHDIIKKLTNIFSCKDDEILEMLDKSLAEKTKITTELKSLSIK 264


>gi|212224048|ref|YP_002307284.1| alanyl-tRNA synthetase-related protein [Thermococcus onnurineus
           NA1]
 gi|212009005|gb|ACJ16387.1| alanyl-tRNA synthetase-related protein [Thermococcus onnurineus
           NA1]
          Length = 214

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  ++  ++ DQT FY   GGQ  D G   G    +++ DV K   G  V HA
Sbjct: 13  KEAKAKVLEIREGALLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDDAG-NVWHA 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGL 617
           + E G  +    + L ID+  R +L   HSA HLL H L+ +LG  +    GS ++ +  
Sbjct: 68  VAEPGKFKPGDEVELKIDWDYRYKLMRIHSAMHLLEHVLNEVLGEGNWELYGSGMSAEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +   + K IE   N  + +   +                           R
Sbjct: 128 RYDILYPENVNQYKEKIIE-LFNKYVDEGGEMKIWW-------------------EGETR 167

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                Y          CGGTHV    EI  L  +  SS+  G +R+E
Sbjct: 168 -----YTQIRDFEVIPCGGTHVKDIKEIGHLKKLKRSSLGKGKQRLE 209


>gi|254251835|ref|ZP_04945153.1| hypothetical protein BDAG_01037 [Burkholderia dolosa AUO158]
 gi|124894444|gb|EAY68324.1| hypothetical protein BDAG_01037 [Burkholderia dolosa AUO158]
          Length = 243

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAE 551
           A +   + + EAV      +  D+T FY   GGQ GD+G   + DG  L I D +K K +
Sbjct: 11  AYLTHCDAIVEAVGDDG--IRLDRTVFYPLGGGQAGDSGTLTLPDGSTLAIADTRKAKFD 68

Query: 552 GIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           G     A+             L     +   ID+  R +    H+A HL+   L      
Sbjct: 69  GATPDDAVHVPAPGQHELVATLARGARVSAAIDWTRRYRHMRLHTAAHLMCAVLP----- 123

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
               +G  +T D +R D   S  I   +   +E  +  ++A   PV T  +  ++ +   
Sbjct: 124 -YPVDGCSVTADYVRLDFATSDAIDRDD---VERRLAALVAGAYPVTTEWITDDEMVERP 179

Query: 664 A----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                 ++       RVR++ ++  D        CGGTHV +T EI  L +       A 
Sbjct: 180 ELVRTMSVKPPMGLGRVRLLRIDGVDL-----QPCGGTHVRNTSEIGSLRVAKLEKKSAR 234

Query: 720 IRRI 723
            RR+
Sbjct: 235 TRRV 238


>gi|153009471|ref|YP_001370686.1| threonyl/alanyl tRNA synthetase SAD [Ochrobactrum anthropi ATCC
           49188]
 gi|151561359|gb|ABS14857.1| Threonyl/alanyl tRNA synthetase SAD [Ochrobactrum anthropi ATCC
           49188]
          Length = 247

 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 12/225 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT-DVQKKAEGIFVHHAIVERGILR 566
           +   ++ DQT FYA +GGQ GD G     DG R++I+  V  + +   +H     +    
Sbjct: 27  ETGGIILDQTNFYATSGGQPGDIGFLERADGSRIEISATVTGENKNEIIHVPAEGQASPT 86

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               LVL +D+  R +L   H+A HLL            S  G+ +  D  R D     P
Sbjct: 87  VGEKLVLHLDWPRRYKLMRMHTACHLLSVVCP------FSITGAAVGEDESRVDFDLPDP 140

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYE 684
             + E   + + + + +  N  V  R ++ E+ +A+                R+  V   
Sbjct: 141 SYTKEF--VTERLMERVNANDAVAIRWISDEEFLANPDIVKSKNVRPPVGLGRIRLVLIG 198

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           + GV  S  CGGTHVS T E+  ++I          RR     G 
Sbjct: 199 ENGVVDSQPCGGTHVSETQEVGEIHIGKIEKKGKENRRFRIRFGP 243


>gi|297852292|ref|XP_002894027.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339869|gb|EFH70286.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 400

 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 67/234 (28%)

Query: 113 LLTKEFDLDQRRLYITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMA 164
            +T+ + L   R+Y T ++ D         EA  +W K   L + +++     DNFW M 
Sbjct: 8   FMTQVYGLPTDRIYSTYFEGDVKAGLQPDNEAGDIWLKF--LPSGRVMPFDCKDNFWEMG 65

Query: 165 ETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224
           +TGPCGPC+EI +D+           +++    +EIWNLVF+QF                
Sbjct: 66  DTGPCGPCTEIHYDR-----DAASLVNKDDPTCLEIWNLVFIQFNNS------------- 107

Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284
                          K    D+D                        +RV+ D +R+   
Sbjct: 108 --------------GKVGADDVDRV-------------------GTAYRVVADPIRTLLI 134

Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLL-----PALCTE 332
            I +G  P +EG  + LR I+R A+ Y + +L   E     +L     P +   
Sbjct: 135 AIVNGSRPGSEGLQHDLRSILRGAVRYGKDILKAEEGYFNAVLYPGTRPTVIRI 188


>gi|121607368|ref|YP_995175.1| threonyl/alanyl tRNA synthetase, SAD [Verminephrobacter eiseniae
           EF01-2]
 gi|121552008|gb|ABM56157.1| Ala-tRNA(Pro) hydrolase [Verminephrobacter eiseniae EF01-2]
          Length = 252

 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 26/230 (11%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGI----- 564
             +V D+T FY + GGQ GD+G  +  DG  + I D +K  +      A +         
Sbjct: 26  GAIVLDRTVFYPQGGGQAGDSGLLLRADGSSITIADTRKGKDAQGHATADIVHIPAPGQQ 85

Query: 565 -----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   I ++ R ++   H+ THLL H +  +       NG  ITPD  R 
Sbjct: 86  DRMAQWTPGTAVTARIAWERRHRMMRLHTTTHLLCHLVPHL------VNGCSITPDYARL 139

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDR 675
           D   + P+   + +++   +  ++A   P+    ++  +  A+ A     ++   +   R
Sbjct: 140 DFAITDPL---DKQALNTGIAALVAAAHPLTVASISDAELDANPALVKSMSVQPPRGTGR 196

Query: 676 VRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +R + +  +     +     CGGTHV++T EI  + +       A  RR+
Sbjct: 197 IRTIRIGGQSASAALIDLQPCGGTHVANTAEIGAIVVTKIEKKSATTRRV 246


>gi|319644905|ref|ZP_07999138.1| hypothetical protein HMPREF1012_00171 [Bacillus sp. BT1B_CT2]
 gi|317392714|gb|EFV73508.1| hypothetical protein HMPREF1012_00171 [Bacillus sp. BT1B_CT2]
          Length = 235

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 17/208 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V ++ ++T FY   GGQ  DTG   G    +++ +V +  +G   H+  VER +      
Sbjct: 33  VYIILEETAFYPTGGGQPHDTGTLNG----VKVLNVDE-IDGEIRHY--VERPLPHLNDQ 85

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +V  ID++ R      H+  H+L  A + +   H    G  +  D +  D+  S+ +T  
Sbjct: 86  VVGVIDWERRFDHMQQHTGQHILSAAFAQLYDLHTV--GFHLGNDTVTIDLDVSE-LTEE 142

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
                E   N+II +N  +V + +  +D +      L   K  + +R+V +         
Sbjct: 143 MAGKAEKLANEIITENRSIVAKWVEYDDLVNYPIRKLPSVK--ENIRLVMI-----DEFD 195

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRA 718
              CGGTH S+TGE+  + +++    R 
Sbjct: 196 YNGCGGTHPSATGEVGAIKVLNWERQRK 223


>gi|241204347|ref|YP_002975443.1| threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858237|gb|ACS55904.1| Threonyl/alanyl tRNA synthetase SAD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 245

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 13/219 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           +   +  DQT FYA +GGQ GDTG     DG ++ +   +       + H  +E      
Sbjct: 25  EDGGIELDQTCFYATSGGQPGDTGELERADGSKIALGQTKHGPSKDVIIHVPLEGAPRPV 84

Query: 568 -EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              +LVL +D+  R +L   H+A HLL    S          G+ +  +  R D    + 
Sbjct: 85  VGETLVLHVDWPRRYRLMRMHTACHLLSVVCS------YPITGAAVGEEESRVDFDMIET 138

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYE 684
           I      ++   +  ++ QN PV  + +  E+ +A+                RV  V   
Sbjct: 139 IDKD---AVTVKLMQLVEQNHPVTLQWITDEELVANPDIVKSKNVRPPMGLGRVSLVCIG 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +     S  CGGTHVS T E+  ++I          RR 
Sbjct: 196 ENSSIDSQPCGGTHVSETQEVGRIHIAKIEKKGKENRRF 234


>gi|186476790|ref|YP_001858260.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia phymatum STM815]
 gi|184193249|gb|ACC71214.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phymatum STM815]
          Length = 243

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 99/251 (39%), Gaps = 32/251 (12%)

Query: 491 IVKAIVQQGEIV----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITD 545
             +A+ +    +        +  +  +  DQT FY   GGQ GD G   + DG R+QI D
Sbjct: 2   TTRALFRDDAYLTRCDATITAIDEQGIHLDQTVFYPLGGGQAGDAGVLTLADGTRIQIAD 61

Query: 546 VQK-KAEGIFVHHAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
            +K K EG     A+             L     L   ID+  R +    H+A+HL+   
Sbjct: 62  TRKAKFEGATPDDAVHVPAPGQEALLAQLAAGQPLTAEIDWGRRYRHMRLHTASHLMCAV 121

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           L          +G  IT D  R D    +PI   E   +E  + +++     V T+ +  
Sbjct: 122 LP------YPVDGCSITSDYARLDFATVEPIGREE---VETRLAELVGGAHGVATQWITD 172

Query: 657 EDAIASGA----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++  +        ++       RVR++ +E  D        CGGTHV +T EI  L +  
Sbjct: 173 DEMASRPELVRTMSVKPPMGLGRVRLLRIEGVDL-----QPCGGTHVRNTQEIGGLRVAK 227

Query: 713 ESSIRAGIRRI 723
                A  RR+
Sbjct: 228 LEKKSARTRRL 238


>gi|237739802|ref|ZP_04570283.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229423410|gb|EEO38457.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 375

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 109/279 (39%), Gaps = 25/279 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G          I +V++    I +    +E G          +I
Sbjct: 20  NSPFYVDGKGGQLGDRGTI----AEANIVEVKE---NIVILDKNLEDG------EYTYSI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           + + +  +   H+A H+         G  ++  G  +  +    D+   K I+   ++ +
Sbjct: 67  NEKRQEDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKEVIEKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E+ VN  I  ++ V   I   E+A         +  K    VR + +     G      C
Sbjct: 124 EELVNKDIKADILVEEEIYTNEEAHKFENLRKAIKEKIKGDVRFIKI-----GDVDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HVS T EI +  I++  +I+    R   + G RA++    + + +K L +       
Sbjct: 179 AGFHVSRTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYNKKHDIIKKLTNTFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            ++  +++  +E  K  +    + L +   +L      +
Sbjct: 239 EILEMLDKSLKE--KASVTAELKSLGMRYAELMAKDFEN 275


>gi|149508352|ref|XP_001507948.1| PREDICTED: similar to Aars2 protein [Ornithorhynchus anatinus]
          Length = 725

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 109/270 (40%), Gaps = 10/270 (3%)

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522
           +  +    +    L      +     +++++     G  ++EA  GQK  ++ D+T FYA
Sbjct: 60  IPPTDDSPKYHYSLQPDGSYEFGVCAANVLQLYGADGAALDEAGGGQKCGLLLDRTSFYA 119

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E GGQ GD G  + +G +  +  V   +  G FV H +   G LR    + L +D   R 
Sbjct: 120 EQGGQAGDRGYLLIEGQQDVLFPVAGAQLSGGFVLHEVTAYGRLRVGDRVQLFVDEAWRL 179

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                H+ATHLL  AL  +LG  V+Q G+ + P+ LRFDV   +   +  + S       
Sbjct: 180 GCMEKHTATHLLSWALRRVLGPEVAQRGAHLGPEQLRFDVATKEEQVAWGVPS------- 232

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                +P   R          G              +  V    G           H+  
Sbjct: 233 --DPPVPRGRRRPPGPSWNDLGERRREPGVSPGPPALHRVGSFPGQPSPPRRGVVRHLLR 290

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
           TG I  L IV +  +  G  R+ A+TG++A
Sbjct: 291 TGAIGDLSIVGDRQVVKGTVRLVAVTGEQA 320


>gi|13470598|ref|NP_102167.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|14021340|dbj|BAB47953.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 248

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 12/225 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDV-QKKAEGIFVHHAIVERGILR 566
            +  ++FD+T FYA +GGQ GDTG     DG R+ I      + +   +H    ++  L 
Sbjct: 28  DRGGIIFDRTIFYATSGGQPGDTGHLERADGSRIAIAATITGETKDEIIHVPAPQQAALA 87

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L ID++ R  L   H+A HLL      +    ++  G+ ++ D  R D      
Sbjct: 88  VGEKVKLAIDWERRHLLMRMHAACHLLT----VVCPFPIT--GAAVSEDDSRVDFDIPDA 141

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYN-DRVRVVSVEYE 684
             S E   +  ++ D++  N P+ TR+++ E+ A   G       +      ++  V   
Sbjct: 142 SFSKE--EVTASLMDLVRANHPIFTRLISDEELAANPGLVKSKNVRPPVGTGKIRLVCIG 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           + G   S  CGGTHV STGEI  ++I          RR     G 
Sbjct: 200 ENGAVDSQPCGGTHVKSTGEIGEIHIGKIEKKGRENRRFRIRFGP 244


>gi|326502278|dbj|BAJ95202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 257

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 15/224 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--- 562
             G +  VV D T F+ + GGQ  DTG  +    R  + DV+ K +G+  H+   E    
Sbjct: 37  EEGGRRAVVLDATIFHPQGGGQPADTGVIVS-AARFLVEDVRVK-DGVVFHYGRFEDADG 94

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L    S+ + ID   R+  S  HSA HLL   ++ + G H+        PDG   +  
Sbjct: 95  EELSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNL-GLHMEPGKGYHFPDGPFVEYK 153

Query: 623 HSKPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVV 679
              P    +   I  E   N++I++   V+  +   E+A      AL      D   R+V
Sbjct: 154 GVVPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALPSYISEDSTPRIV 213

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  G      CGGTHV+   +I  L + +   ++ G+ ++
Sbjct: 214 KF-----GDCPGCPCGGTHVADITDIGNLKVTN-IRVKKGVTKV 251


>gi|330816733|ref|YP_004360438.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia gladioli BSR3]
 gi|327369126|gb|AEA60482.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia gladioli BSR3]
          Length = 244

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 28/229 (12%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKA-----EGIFVHHAIVER 562
            +  +  ++T FY   GGQLGDTG   +GDG RL I D +K           +H    ++
Sbjct: 24  DESGLTLERTVFYPHGGGQLGDTGVITLGDGSRLAIADARKSQLPGATPDDVLHVPAPDQ 83

Query: 563 ----GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     + + ID+  R ++   H+A+HL+  AL          +G  ITPD  R
Sbjct: 84  LAVLSKLAVGDEVAIEIDWARRNRMMRLHTASHLMCGALP------YPVDGCSITPDYAR 137

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYND 674
            D   S+P+   E   I+  +   +     V    ++ E   A+       ++       
Sbjct: 138 LDFVTSEPLARDE---IDATLAKWVEAARAVTIEQISDEALQANPDLVRTMSVKPPSGFG 194

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            VR+V ++  D        CGGTHV++T EI  +++       A  RR+
Sbjct: 195 SVRLVRIDGIDL-----QPCGGTHVANTAEIGPIHVTKMEKKTARTRRV 238


>gi|78067074|ref|YP_369843.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Burkholderia sp. 383]
 gi|77967819|gb|ABB09199.1| Ala-tRNA(Pro) hydrolase [Burkholderia sp. 383]
          Length = 243

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 91/225 (40%), Gaps = 28/225 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAEGIFVHHAIVERGI------ 564
           +  D+T FY   GGQ GDTG   + DG  + I D +K K +G     A+           
Sbjct: 28  IRLDRTVFYPLGGGQAGDTGTLTLPDGSTIAIADTRKAKFDGATPDDAVHVPAPGQEASV 87

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     +V  ID+  R +    H+A HL+   L        + +G  +T D +R D  
Sbjct: 88  AALVAGTRVVAEIDWLRRYRHMRLHTAAHLMCAVLP------YAVDGCSVTADYVRLDFA 141

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGTKYNDRVRV 678
            S  I   +   +E  +  ++    PV T  +  ++  A        ++       RVR+
Sbjct: 142 TSDAIDRDD---VERRLAGLVVGAHPVTTEWITDDEMAARPDLVRTMSVKPPMGLGRVRL 198

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 199 LRIEQVDL-----QPCGGTHVRNTSEIGALRVAKLEKKSARTRRL 238


>gi|312962489|ref|ZP_07776980.1| threonyl/alanyl tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283416|gb|EFQ62006.1| threonyl/alanyl tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 242

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 20/233 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKA--EGIF 554
           Q       ++  +  +  + T FY   GGQ GDTG   + DG RL +T   +      I 
Sbjct: 18  QNAFSARVIAVSEQGIALEHTLFYPTGGGQPGDTGHLTLPDGTRLDVTGTVRDPVLRSII 77

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            H        L   + +   +D++ R Q    H+  HLL   +           G  I+ 
Sbjct: 78  WHQVEHCPEQLIAGVQVDAGLDWERRYQHMKMHTCLHLLCSII------DAPVTGCSISA 131

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED----AIASGAAALLGT 670
           D  R D    +     +  SI  ++N +I Q  PV T  M   +       +   A+   
Sbjct: 132 DKGRLDFDLPEMTLDKD--SITRDLNALIEQAHPVKTLSMAATEYSTLLQITRTQAVAPP 189

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                VRV+ +   D        CGGTHV +T EI  ++           RR+
Sbjct: 190 VIQGSVRVIEIAGID-----IQPCGGTHVINTEEIGRVFCEKIEKKSKHNRRV 237


>gi|254304123|ref|ZP_04971481.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324315|gb|EDK89565.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 373

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 109/279 (39%), Gaps = 25/279 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G    D   +++ +       + +    +E G           I
Sbjct: 20  NSPFYVDGKGGQLGDRGTIF-DANIIEVRE------NLVILDKNLEDG------EYTYFI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +   H+A H+         G  ++  G  +  +    D+   K I+   +  +
Sbjct: 67  DEKRREDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKEVIDKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E+ VN+ I +++ +   I   E+A         +  K    VR + +     G      C
Sbjct: 124 EELVNNDIKKDIIIEEEIYTNEEAHKIENLRKAIKDKIKGDVRFIKI-----GDIDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HVS T EI +  ++   +I+    R   + G+RA++    + + +K L +       
Sbjct: 179 AGFHVSRTSEIEIFKLIYHENIKGNYTRFYFLAGERAKADYNKKHDIIKKLTNIFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            ++  +++   E  K ++    + L +   +L      +
Sbjct: 239 EILEMLDKSLTE--KAKITAELKSLSMKYAELMVKDFEN 275


>gi|159041822|ref|YP_001541074.1| threonyl/alanyl tRNA synthetase SAD [Caldivirga maquilingensis
           IC-167]
 gi|157920657|gb|ABW02084.1| Threonyl/alanyl tRNA synthetase SAD [Caldivirga maquilingensis
           IC-167]
          Length = 242

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 16/234 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E+  + ++     V+ D+T  +  +GG + DTG  I  G + +I D   K +   V H 
Sbjct: 14  KEVDAKVIAVDGSNVILDKTIIHPSSGGVVHDTGLIITKGEQYRIIDAVHKRDTDDVIHV 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L+    + + +D+  R +L   H+A+H++     +   + V+  G  I PD  R
Sbjct: 74  LDRSPQLKYGDDVKVVLDWDRRYRLMRLHTASHIMAGIAYSKYNALVT--GGDIQPDYAR 131

Query: 619 FDVTHSKPITSAELK----SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK--- 671
            D + +      EL+     I    N+I+ + + V    M RE+A+       L  +   
Sbjct: 132 DDYSLTA--GGEELRRIFNEIVTEANEIVKKGIEVKVYWMPREEALKVPGIVKLAEREPP 189

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             D+ R+V +   D         GG HV++T EI  + I    +     +RI  
Sbjct: 190 PGDKWRIVEIPGVD-----VQADGGPHVANTREIGEIIIQKIENRGRNKKRIYF 238


>gi|304391378|ref|ZP_07373320.1| threonyl/alanyl tRNA synthetase SAD [Ahrensia sp. R2A130]
 gi|303295607|gb|EFL89965.1| threonyl/alanyl tRNA synthetase SAD [Ahrensia sp. R2A130]
          Length = 242

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 102/241 (42%), Gaps = 16/241 (6%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEG 552
           A  Q  + V  AVS   +E   DQT FYA +GGQ GD+G     DG ++ IT V+     
Sbjct: 10  AYAQTCDAVVVAVSADGIE--LDQTVFYATSGGQPGDSGFLERADGSQIVITGVRYADGS 67

Query: 553 IFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
                  +E G  +      L+  ID++ R +L   H+A HLL  AL       +   G+
Sbjct: 68  KITILHEIEDGAALPDVGEKLIAHIDWERRHRLMRMHTACHLLSVALP------LPITGA 121

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG- 669
            ++    R D   ++    AEL +    + +++  N  V TR +  ++  A+        
Sbjct: 122 AVSETDSRIDFDMTETADKAELTA---KLMELVEGNHSVFTRWITPDELAANPGLVKSKN 178

Query: 670 -TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                   R+  V   D  V  S  CGGTHVS TGEI  ++I          RR+    G
Sbjct: 179 VRPPTGVDRIRLVCIGDDAVVDSQPCGGTHVSETGEIGEIHIGKIEKKGRENRRMRIRFG 238

Query: 729 Q 729
            
Sbjct: 239 P 239


>gi|107023216|ref|YP_621543.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia AU
           1054]
 gi|105893405|gb|ABF76570.1| Ala-tRNA(Pro) hydrolase [Burkholderia cenocepacia AU 1054]
          Length = 243

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 97/252 (38%), Gaps = 41/252 (16%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQIT 544
               +IV+AI + G             +  D+T FY   GGQ GDTG   + DG  + I 
Sbjct: 14  TQCEAIVQAIGEDG-------------IRLDRTVFYPLGGGQAGDTGTLTLPDGGTIAIA 60

Query: 545 DVQK-KAEGIFVHHAIVERG--------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           D +K K +G     A+             L     +V  ID+  R +    H+A HL+  
Sbjct: 61  DTRKAKFDGATPDDAVHVPASGQEASVATLVPGTRVVAEIDWLRRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L        + +G  +T D +R D   +  I   +   +E  +   +    PV T  + 
Sbjct: 121 VLP------YAVDGCSVTADYVRLDFATADAIDRDD---VERRLAGFVVGAHPVTTEWIT 171

Query: 656 REDAIASGA----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++           ++       RVR++ +E  D        CGGTHV +T EI  L + 
Sbjct: 172 DDEMAERPELVRTMSVKPPMGLGRVRLLRIENVDL-----QPCGGTHVRNTSEIGGLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRL 238


>gi|116690299|ref|YP_835922.1| threonyl/alanyl tRNA synthetase, SAD [Burkholderia cenocepacia
           HI2424]
 gi|116648388|gb|ABK09029.1| Ala-tRNA(Pro) hydrolase [Burkholderia cenocepacia HI2424]
          Length = 243

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 97/252 (38%), Gaps = 41/252 (16%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQIT 544
               +IV+AI + G             +  D+T FY   GGQ GDTG   + DG  + I 
Sbjct: 14  TQCEAIVQAIGEDG-------------IRLDRTVFYPLGGGQAGDTGTLTLPDGGTIAIA 60

Query: 545 DVQK-KAEGIFVHHAIVERG--------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           D +K K +G     A+             L     +V  ID+  R +    H+A HL+  
Sbjct: 61  DTRKAKFDGATPDDAVHVPASGQEASVATLVPGTRVVAEIDWLRRYRHMRLHTAAHLMCA 120

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
            L        + +G  +T D +R D   +  I   +   +E  +   +    PV T  + 
Sbjct: 121 VLP------YAVDGCSVTADYVRLDFATADAIDRDD---VERRLAGFVVGAHPVTTEWIT 171

Query: 656 REDAIASGA----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            ++           ++       RVR++ +E  D        CGGTHV +T EI  L + 
Sbjct: 172 DDEMAERPELVRTMSVKPPMGLGRVRLLRIENVDL-----QPCGGTHVRNTSEIGGLRVA 226

Query: 712 SESSIRAGIRRI 723
                 A  RR+
Sbjct: 227 KLEKKSARTRRL 238


>gi|307297735|ref|ZP_07577541.1| Threonyl/alanyl tRNA synthetase SAD [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916995|gb|EFN47377.1| Threonyl/alanyl tRNA synthetase SAD [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 372

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 118/297 (39%), Gaps = 18/297 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-AIVERGI 564
           V G     +     F     GQLGD G         +I  V+K  + + +     +E+  
Sbjct: 11  VEGTTYIKICYGNVFVDGEAGQLGDRGEV----DSFKIKSVKKIGDEVVLEIDGKIEK-- 64

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 + + ID + R  +S  H+A HLL     + + +     G  +  +    D++  
Sbjct: 65  -NKGEMVDIRIDEERRIDISQQHTAQHLLSAVFLSEMDAETV--GFQMGEEYTTIDLSL- 120

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             +    +  +E   N+ I ++  V   +++R +         +  +  +  R + +   
Sbjct: 121 GILKDDMIDYVERLCNNFIGEDRAVRKFVVDRSEIQKYHLRKEIKREITESEREIRLVEI 180

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           DG     + C G HV  TG+I LL I+    ++  + R+  + G+RA +    + + + +
Sbjct: 181 DG--IDLSACSGLHVERTGQIGLLKILKHEKVKGSLTRVYFVAGKRALNDYFTKHKLITN 238

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
            +  L  S  ++  R+  + +E R+        K++   E L+ +   ++N     +
Sbjct: 239 SSLLLTCSYLDLTDRIASLIDEIRQ-----DNSKIRSFSERLAGYVAREINGSKSRV 290


>gi|254172499|ref|ZP_04879174.1| alanyl-trna synthetase domain protein [Thermococcus sp. AM4]
 gi|214033428|gb|EEB74255.1| alanyl-trna synthetase domain protein [Thermococcus sp. AM4]
          Length = 213

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 32/231 (13%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A +++ +     V G    ++ DQT FY   GGQ  D G   G    +++ DV K  EG 
Sbjct: 10  AYLKEAKAKVLEVKGD--ALLLDQTIFYPTGGGQPHDRGTING----IEVLDVYKDDEG- 62

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V H + E    +    + L ID+  R +L   HSA HLL H L+ +L       GS ++
Sbjct: 63  NVWHVVAEPEKFKPGDEVELKIDWDYRYKLMRIHSAMHLLEHVLNLVLPGKWELYGSGMS 122

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +  R+D+ + + +   + + IE   N ++ +   +                   G K  
Sbjct: 123 VEKGRYDILYPENVNQWKEQIIET-FNRLVDEGGEMKIWW--------------EGEKRL 167

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            ++R                CGGTHV    EI  L     SS+  G +R+E
Sbjct: 168 TQIR----------DFEVIPCGGTHVRDIKEIGHLKKFKRSSLGKGKQRLE 208


>gi|289581020|ref|YP_003479486.1| Alanyl-tRNA synthetase, class IIc-like protein [Natrialba magadii
           ATCC 43099]
 gi|289530573|gb|ADD04924.1| Alanyl-tRNA synthetase, class IIc-like protein [Natrialba magadii
           ATCC 43099]
          Length = 249

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 16/222 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGI--LRTE 568
           +V DQT FY E GGQ  D G    +       +TDVQKK      HH  +E G       
Sbjct: 27  LVLDQTAFYPEGGGQPADIGSLRLEDGTESWSVTDVQKK--DTIYHHLELENGAEAPAPG 84

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++V  +D   RR  +  H+A HLL   L     +  +  G+ +  D  R D  + +   
Sbjct: 85  TTVVGELDADRRRAHNRYHTAQHLLSAVLLEEFDAQTT--GNQLYADRARLDCAY-ERFE 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRVVSVEY 683
            A+L+ +E  +ND++   LPV    ++REDA A          LL     + VR+V +  
Sbjct: 142 DADLERLEQRLNDLVDDELPVTWDTLDREDAEARLDPDRTRLHLLPESITE-VRIVQIGA 200

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +D  +  +A C GTHV +TGEI  + +    +      R+  
Sbjct: 201 DDAVIDRTA-CAGTHVENTGEIGHIEVTGRETRGPDEERVRF 241


>gi|85720049|gb|ABC75593.1| alanyl-tRNA synthetase isoform 3 [Ictalurus punctatus]
          Length = 259

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 99/253 (39%), Gaps = 36/253 (14%)

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM--- 736
                 G + S   CGGTH+ ++G      IVSE +I  GIRRI A+TG  A+       
Sbjct: 2   DPNSTAGALTSIEFCGGTHLQNSGHAAQFVIVSEEAIAKGIRRIVAVTGAAAQKAQRKAD 61

Query: 737 GQDEKLKSLASFLK---VSQGNVVGRVEEIWE--------EYRKLQLIHAKRKLQLNVED 785
              + L ++A  +K       +V   + ++ E        +++K ++    + L+  ++D
Sbjct: 62  ALHQSLSAMAEKVKAQTAPNKDVQKEIADLTETLGTAVISQWQKDEMRETLKGLKKIMDD 121

Query: 786 LSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           L     ADV                     +  + S   +K L   +  L+ +      M
Sbjct: 122 LDRSSKADVQKRVLEKTKEIIESNPNQPLLVMEMESGASAKALNESLKLLKSQSPQTAAM 181

Query: 827 LVGISKE-KKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           L  +  E  K   L  V +++ +    A +  +    +L  G GGG+   AQ+ G N   
Sbjct: 182 LFAVDNEAGKIICLCQVPQEVSNQGLKANEWVQEVCPLL-DGKGGGKDMSAQATGRNTQC 240

Query: 885 ADQAIAGVASFLK 897
             +A+     F +
Sbjct: 241 VQEALKLANEFAQ 253


>gi|319783367|ref|YP_004142843.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169255|gb|ADV12793.1| Alanyl-tRNA synthetase, class IIc-like protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 247

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 17/245 (6%)

Query: 494 AIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDV- 546
           A+ +    +  A +       +  ++ D+T FYA +GGQ GDTGC    DG R+ I    
Sbjct: 7   ALFRDDAYLRTADATIVAVNDRGGIILDRTIFYATSGGQPGDTGCLERADGSRIAIAATL 66

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             + +   +H    E+ + +   ++ L ID++ R  L   H+A HLL      +    ++
Sbjct: 67  TGETKDEIIHVPAPEQAVPQVGETVRLAIDWERRHLLMRMHAACHLLT----VVCPFPIT 122

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAA 665
             G+ ++ D  R D        + E   I   + +++  + P+  R+++ E+ A   G  
Sbjct: 123 --GAAVSEDDSRVDFDAPDAGFTKE--DITAGLMELVRADHPIFVRLISDEELAANPGLV 178

Query: 666 ALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                +      ++  V   D     S  CGGTHV STGE+  ++I          RR  
Sbjct: 179 KSKNVRPPAGTGKIRLVCIGDNASVDSQPCGGTHVKSTGEVGEIHIGKIEKKGRENRRFR 238

Query: 725 AITGQ 729
              G 
Sbjct: 239 IRFGP 243


>gi|294783088|ref|ZP_06748412.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294479966|gb|EFG27743.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 375

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 109/279 (39%), Gaps = 25/279 (8%)

Query: 517 QTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
            +PFY +  GGQLGD G          I +V++    I +    +E G          +I
Sbjct: 20  NSPFYVDGKGGQLGDRGTI----AEANIVEVKE---NIVILDRNLEDG------EYTYSI 66

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           + + +  +   H+A H+         G  ++  G  +  +    D+   K I+   ++ +
Sbjct: 67  NEKRQEDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKEVIEKL 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           E+ VN  I  ++ V   I   E+A         +  K    VR + +     G      C
Sbjct: 124 EELVNKDIKADILVEEEIYTNEEAHKFENLRKAIKEKIKGDVRFIKI-----GDVDICAC 178

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HVS T EI +  I++  +I+    R   + G RA++    + + +K L +       
Sbjct: 179 AGFHVSRTSEIEIFKIINHENIKGNYTRFYFLAGDRAKNDYNKKHDIIKKLTNTFSCKDD 238

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            ++  +++  +E  K  +    + L +   +L      +
Sbjct: 239 EILEMLDKSLKE--KASVTAELKSLGMRYAELMAKDFEN 275


>gi|292655029|ref|YP_003534926.1| alanyl-tRNA synthetase-like protein [Haloferax volcanii DS2]
 gi|291371865|gb|ADE04092.1| alanyl-tRNA synthetase homolog [Haloferax volcanii DS2]
          Length = 244

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 20/243 (8%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQK 548
           A   + E   E V G    VV D+T FY E GGQ  DTG         DG    +TDVQK
Sbjct: 10  ATTHEFEATVETVRGTD-RVVLDRTYFYPEGGGQPHDTGTLSVDGEGCDGETWDVTDVQK 68

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           +     V    V         ++   +D   RR  S  H+A HLL   L  +        
Sbjct: 69  RDRIEHV----VAGDAPDPGATVTGRVDPARRRAHSRYHTAQHLLSAVL--LDEFDAETT 122

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SG 663
           G+ +  D    D  + +     +L++IE  +ND++A +LPV    ++RE+A A       
Sbjct: 123 GNQLYADHAHLDCAYDR-FDGDDLRTIETRLNDLVASDLPVRWYSLDREEAEATLDPDRT 181

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              LL     + VR+V +   D        C GTHV STG+I  + I   ++  +   R+
Sbjct: 182 RLHLLPESIRE-VRIVEIGDAD-DPFDRTACAGTHVESTGDIGTVSIAGRTTQGSAHERV 239

Query: 724 EAI 726
             +
Sbjct: 240 NFV 242


>gi|296242902|ref|YP_003650389.1| Ala-tRNA(Pro) hydrolase [Thermosphaera aggregans DSM 11486]
 gi|296095486|gb|ADG91437.1| Ala-tRNA(Pro) hydrolase [Thermosphaera aggregans DSM 11486]
          Length = 238

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 11/216 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D+T F+ ++GG   DTG  + +G+ + +  V    E   + H + +       + ++
Sbjct: 27  LVLDKTIFHPKSGGVDNDTGWIVYNGLEIPVNSVYYDKESGLLIHELEKPLEASEGVKVL 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L +++  R +L   H+A HLL   +     + ++  G  I+ +    D +       A L
Sbjct: 87  LRLNWNRRYRLMRLHTAAHLLSAIMYRDYNALIT--GGNISEEYAYDDYSMETFDREAFL 144

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVH 689
           K++E   N I+ Q L V    + R++A+       L  +     D++R+V +   D    
Sbjct: 145 KAVEK-ANQIVRQALEVKIYWLPRDEALKIPGVVKLAARMPPSVDKLRIVEIPGID---- 199

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                GG HV +T EI  + ++   +     +RI  
Sbjct: 200 -VQADGGPHVRNTLEIGEIVLLKIENKGKNKKRIYF 234


>gi|14590056|ref|NP_142120.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570440|sp|O57848|ALAXM_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-M; Short=AlaX-M;
           AltName: Full=Alanyl-tRNA deacylase AlaX-M
 gi|134104183|pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
           Pyrococcus Horikoshii
 gi|3256494|dbj|BAA29177.1| 216aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 216

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 31/214 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H + E    +    + 
Sbjct: 30  ILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEG-NVWHVVKEPEKFKVGDEVE 84

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAE 631
           L ID+  R +L   H+  HLL H L+ +LG  +    GS ++ +  R+D+ + + +   +
Sbjct: 85  LKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYK 144

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
            + I    N  + +   V                        DR       Y        
Sbjct: 145 -EQIISLFNKYVDEGGEVKIWW------------------EGDRR------YTQIRDFEV 179

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             CGGTHV    EI  +  +  SSI  G +R+E 
Sbjct: 180 IPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 213


>gi|326491881|dbj|BAJ98165.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 251

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 15/224 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--- 562
             G +  VV D T F+ + GGQ  DTG  +    R  + DV+ K +G+  H+   E    
Sbjct: 31  EEGGRRAVVLDATIFHPQGGGQPADTGVIVS-AARFLVEDVRVK-DGVVFHYGRFEDADG 88

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L    S+ + ID   R+  S  HSA HLL   ++ + G H+        PDG   +  
Sbjct: 89  EELSQGQSVSMEIDADRRKLNSRLHSAGHLLDSCMTNL-GLHMEPGKGYHFPDGPFVEYK 147

Query: 623 HSKPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVV 679
              P    +   I  E   N++I++   V+  +   E+A      AL      D   R+V
Sbjct: 148 GVVPTDQLQDTKIQLEKEANELISKGAKVLVSVFPYEEAAKLCGGALPSYISEDSTPRIV 207

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  G      CGGTHV+   +I  L + +   ++ G+ ++
Sbjct: 208 KF-----GDCPGCPCGGTHVADITDIGNLKVTN-IRVKKGVTKV 245


>gi|227873441|ref|ZP_03991696.1| alanyl-tRNA synthetase [Oribacterium sinus F0268]
 gi|227840746|gb|EEJ51121.1| alanyl-tRNA synthetase [Oribacterium sinus F0268]
          Length = 408

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 134/401 (33%), Gaps = 58/401 (14%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
             ++ FY E GGQ  D G   G  +        ++ +G    +   +         +   
Sbjct: 13  LSESFFYPEGGGQPCDRGSIAGAKLLF-----VEEKDGELWQYTEAD---FPEGAKVRCQ 64

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
            D   RR  S NHSA H+    +S       S        +     V      +  EL+ 
Sbjct: 65  FDTDFRRWQSENHSAEHIFSGLVSKRFSYKNSGFHMECFGENPHMTVDFDGEFSEKELEE 124

Query: 635 IEDNVNDIIAQNLPVVTRIMNRED---AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +E  VN +I +NLP+    +  E+         +     K      +  +E        S
Sbjct: 125 LEQGVNAVIRKNLPIREIYLEGEEDRSLERKDGSISFRQKKALEGDIRIIEIPKV---DS 181

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
             C GTHVS TGEI +  I+S    R G  R+  + G+ A   L  + + L   A  L  
Sbjct: 182 CACCGTHVSFTGEIGVFTILSYEKHRKGC-RLTMLAGELAFLALEKKLKLLSGFAQSLSR 240

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---------------------------- 783
               +    + + E     +    +  L+  +                            
Sbjct: 241 PWTEIPEAFQSLQERIFAKE-EEKRGILEAGICLLEEKILKELEEKRKGIEDGERPAKTL 299

Query: 784 ------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
                 +D          ++   +S++ +K+L+ + D L++ +   +I L    KE+  S
Sbjct: 300 FLGSPLKDSCFSYYGKNQYLFLYLSDLGTKDLQKICDRLRRSLPLSLICL--GKKEEGFS 357

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           V+    E+ +  F    L            GGG+  M Q  
Sbjct: 358 VVAGSREEDMRAF--GKLMGEKLSF----RGGGQKEMIQGS 392


>gi|317497359|ref|ZP_07955682.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895428|gb|EFV17587.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 102

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 65/95 (68%), Gaps = 4/95 (4%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
          V+ +R  +LEFF+  GH  L S SL+P ND +L+  N+GM P K  FTGQE P    VTT
Sbjct: 6  VNELRKMYLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTT 65

Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSF 98
           QKC+R G    D++NVG+T RH TFFEMLGNFSF
Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSF 96


>gi|307594435|ref|YP_003900752.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta distributa DSM
           14429]
 gi|307549636|gb|ADN49701.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta distributa DSM
           14429]
          Length = 240

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 14/231 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E            V  DQT F+  +GG   DTG  I  G    + +V K+ E     H +
Sbjct: 15  EFDATVTRIDGNRVWLDQTLFHPRSGGVANDTGRLIWQGEEYVVKEVIKEGEDAV--HIL 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R   +L   ID++ R +L   H+ATH++         + V+  G  ITP+  R 
Sbjct: 73  DREPRFRVGDTLHGVIDWERRYRLMRLHTATHIIAALAYKKYNALVT--GGDITPEYARD 130

Query: 620 DV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YND 674
           D   T S        + +    N+I+ + +PV    + RE+A+       L  +     D
Sbjct: 131 DYNLTLSGDALRKAFQDLIAEANEIVRRGIPVKIYFLRREEAMKIPGVVKLAEREPPPGD 190

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             R+V +E  D         GG HV++T EI  +  +   S     +R+  
Sbjct: 191 EWRIVEIEGID-----IQADGGPHVANTREIGEIVFLKSESRGKDKKRVYY 236


>gi|85703002|ref|ZP_01034106.1| hypothetical protein ROS217_19712 [Roseovarius sp. 217]
 gi|85671930|gb|EAQ26787.1| hypothetical protein ROS217_19712 [Roseovarius sp. 217]
          Length = 239

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 14/235 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A   + E V  A + +   +V D   FY   GGQ GD+G     G  L I    K     
Sbjct: 10  AYQTEAEAVVTAHTPEGG-IVLDHCLFYPAGGGQPGDSGRLEWRGRSLPIATAVKADGAA 68

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
               A   + +     +L  TID+  R +L   H+A HLL   +       +  +G  + 
Sbjct: 69  IALVAAEPQPLPAVGTALRQTIDWPRRHRLMRMHTALHLLSVVIP------LPVSGGAVA 122

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLG 669
            +  R D    +     +  ++ED +N ++ ++LPV    +  +   A+       ++  
Sbjct: 123 EERSRLDFDMPEA--PTDRDTLEDYLNQLVDRDLPVTEDWITDDALRANPGLIKTMSVAP 180

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              + RVR+V +  +         CGGTHV+ TGEI  L +          RR+ 
Sbjct: 181 PMGSGRVRLVRIG-QGRDQVDLQPCGGTHVARTGEIGRLRLGKFEKKGRQNRRVY 234


>gi|159110639|ref|XP_001705570.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia ATCC 50803]
 gi|157433657|gb|EDO77896.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia ATCC 50803]
          Length = 401

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 112/274 (40%), Gaps = 19/274 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
                V V    + F+ ++GGQLGD G   G    L +       E   +H         
Sbjct: 20  AKNDNVYVRLSHSYFFPQSGGQLGDVGSIGG----LPVITTSCDEEHRPLHLMATAPPS- 74

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             ++ L  +++   RRQ SI+H+  H+L         +  S     + PD     +  S 
Sbjct: 75  --DIELDCSVNEVYRRQNSISHTGQHILSGVAEQCFQATTSSY--TMGPD--LSTLELSV 128

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG--AAALLGTKYNDRVRVVSVEY 683
            +   +L  IE   NDII Q +PV + +++ E+ +      +       N  +RVV +E 
Sbjct: 129 KLDMDKLLEIESRANDIIRQCIPVKSILIHSEEELGKYSELSRPKLKSLNFPLRVVDIEG 188

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D     + LC GTH  +TGE  L+ +    S R G+ +++   G RA S +  + + L 
Sbjct: 189 VD-----TCLCCGTHAGNTGECGLVKVFGCESSRGGV-KVQFAVGDRAVSLINNRLKTLS 242

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            + + L      V   VE +  E + L+      
Sbjct: 243 IICASLTTGHDAVAKSVEALLAEGKVLKTQEKSL 276


>gi|118431256|ref|NP_147589.2| misacylated tRNAala hydrolase AlaX [Aeropyrum pernix K1]
 gi|116062579|dbj|BAA79887.2| misacylated tRNAala hydrolase AlaX [Aeropyrum pernix K1]
          Length = 249

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 7/235 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           E            VV D+T F+    GG   DTG       R ++     + + +  H+ 
Sbjct: 15  EFEARVEEASGGRVVLDRTAFHPGPHGGLDTDTGYIFYGDKRYRVVRAAVEGD-VVAHYL 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
             +   L     +   ID++ R ++   H+ +H+L   L       V   G  ITPD  +
Sbjct: 74  DSDTATLEPGAVVKGVIDWERRYRMMRLHTFSHILAAVLYEKH--DVLVTGGHITPDYGK 131

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D +         ++      N+I ++ + V    + RE+A+       L  K    V  
Sbjct: 132 DDFSIEGGGWREVIEEAFREANEIASRCIEVKVYWLPREEALKIPGIVKLANKLPPEVET 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
           + +    G        GG HV +T EI  + I    S     +R+   T + A  
Sbjct: 192 LRIVEIPG--VDVQADGGPHVRNTCEIGRVVITKLESKGKRRKRVYY-TLEEALE 243


>gi|222617646|gb|EEE53778.1| hypothetical protein OsJ_00171 [Oryza sativa Japonica Group]
          Length = 1257

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 23/246 (9%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++ V +++Q+         G +  V+ D T FY + GGQ  DTG     G    I D 
Sbjct: 27  SSTATVVSLLQE--------EGGRRAVLVDSTVFYPQGGGQPADTGVISAGGGTRFIVDD 78

Query: 547 QKKAEGIFVHHAIVERG------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +  +G+  H+   E              S+ L +D + R   S  HSA HL+   +S I
Sbjct: 79  VRMKDGVVFHYGRFEDAGDGCNSGFSEGQSVSLEVDAERRNLNSRLHSAGHLIDICMSNI 138

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVTRIMNRED 658
             SH         PDG   +     P    + K   +E   N++I +   V+  I+  E+
Sbjct: 139 GLSHFDPGKGHHFPDGPFVEYKGVIPPDQLQDKKNELEKEANELITKGAKVLAYILPYEE 198

Query: 659 AIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           A      AL      D   R+V       G +    CGGTHV+    I  + + +   ++
Sbjct: 199 AAQLCGGALPSYISKDSTPRIVKF-----GDYPGGPCGGTHVADISIINNIKVTN-IRVK 252

Query: 718 AGIRRI 723
            G+ ++
Sbjct: 253 KGLTKV 258


>gi|255513359|gb|EET89625.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 237

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 7/231 (3%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A V+  E    +V  Q VE   D+T FY   GGQ  D+G       R ++ +V K   G 
Sbjct: 10  AYVKDFEATVSSVDNQIVE--LDRTAFYPTGGGQPSDSGTISFGNSRYKVIEVSKS--GD 65

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V H +     L     +   +D++ R      H+A H++   +   L  +++  G  I 
Sbjct: 66  SVLHKMENAQGLEAGTQIEGHLDWEKRYMHMRLHTALHIIDGVVHKNLDGNIT--GGQIY 123

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D  R D            K IE    +I+ + L V  + M++E+A A    A       
Sbjct: 124 DDRARMDFDVPGLDRQKVEKIIEA-AQEIVDKRLTVSVKFMSKEEASAVPGIARTAPGEE 182

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              ++  +   D       L GGTHV++T E+  + I+   +  +  +RIE
Sbjct: 183 LMRKLDIIRIIDIEGFDFQLDGGTHVANTSEVGKIGIIKYENKGSHNKRIE 233


>gi|238620148|ref|YP_002914974.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.4]
 gi|238381218|gb|ACR42306.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.4]
          Length = 236

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 9/228 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHH 557
            E     V  +   V+ D+T FY   GG   DTG  I + G ++ +T+ ++   G  +H 
Sbjct: 13  KEFEGRVVKIEDSYVILDKTAFYPGGGGLENDTGFLINERGEKINVTEAKRGENGEILHK 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I +   L     ++  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  
Sbjct: 73  -IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQA 129

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + D           L  + +  N+I+ + + +    + RE+A+   A   L  +   ++ 
Sbjct: 130 KDDFNVE---NKDTLIELINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIP 186

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  +    G        GG HV++T EI  + ++   +   G +R+  
Sbjct: 187 IWRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYY 232


>gi|57640919|ref|YP_183397.1| alanyl-tRNA synthetase-related protein (partial) [Thermococcus
           kodakarensis KOD1]
 gi|57159243|dbj|BAD85173.1| alanyl-tRNA synthetase-related protein (partial) [Thermococcus
           kodakarensis KOD1]
          Length = 215

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  +   ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H 
Sbjct: 14  KEAKAKVLEVRDNALLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEG-NVWHV 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS-QNGSCITPDGL 617
           + E  + +    + L ID+  R +L   HSA HLL H L+ +LG       GS ++ +  
Sbjct: 69  VAEPEMFKVGDEVELKIDWDYRYKLMRIHSAMHLLDHVLNEVLGKGKWKPYGSGMSYEKG 128

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +   + K IE   N  + +   +                           R
Sbjct: 129 RYDIEYPENVNQYKEKIIE-LFNRYVDEGGEMKIWW-------------------EGETR 168

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  +            CGGTHV    EI  L  +  SS+  G +R+E
Sbjct: 169 LTQIR-----DFEVIPCGGTHVRDIKEIGHLKKLKRSSLGRGKQRLE 210


>gi|299066945|emb|CBJ38140.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 245

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 15/216 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           +  D+T FYA  GGQ GDTG  +  DG  + I D   +A+   + H   +    G+L   
Sbjct: 28  IELDRTVFYARGGGQAGDTGTLVLPDGQTVAIADTVYRADRQAILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  LPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             E +++   +N +IA++ PV   ++  E  A        +G      V  + +   DG 
Sbjct: 142 --ERETLTAQLNALIARDTPVRIALITPEALAAQPQLVRTIGAAPPAGVSAIRIVEIDG- 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 CGGTHV +TGEI    +          RR+
Sbjct: 199 -IDRQPCGGTHVHATGEIGHATVTKIEKKSRQNRRV 233


>gi|222148395|ref|YP_002549352.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|221735383|gb|ACM36346.1| alanyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 245

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 14/233 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGI 553
            +   E V  AV      +  DQT FYA +GGQ GDTG     DG  +Q+   +   +  
Sbjct: 12  YLSTAEAVVTAVHDD-GSIELDQTCFYATSGGQPGDTGFLERADGSTIQLGLTRHGPDKS 70

Query: 554 FVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
            + H  +E          LVL +D+  R +L   H+A HLL      +    ++  G+ +
Sbjct: 71  IILHLPLEGQPSPDLGEKLVLHVDWPRRYKLMRMHTACHLLS----VVCPFPIT--GAAV 124

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             D  R D   S  I      ++  ++  ++ +N PV    +      A+          
Sbjct: 125 GEDESRVDFDMSDAIDRE---TVTADLMRLVEENHPVYLEWITDAQLAANPDIVKSKNVR 181

Query: 673 N--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 RV  V   +     S  CGGTHVS T E+  ++I          RR 
Sbjct: 182 PPMGLGRVSLVCIGENSSVDSQPCGGTHVSETQEVGAIHIAKIEKKGKENRRF 234


>gi|17545707|ref|NP_519109.1| hypothetical protein RSc0988 [Ralstonia solanacearum GMI1000]
 gi|17428001|emb|CAD14690.1| probable threonyl/alanyl trna synthetase protein [Ralstonia
           solanacearum GMI1000]
          Length = 245

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 91/216 (42%), Gaps = 15/216 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           +  DQT FYA  GGQ GDTG  I  DG  + I D    A+ + + H   +    G+L   
Sbjct: 28  IELDQTVFYARGGGQAGDTGTLILPDGQTVAIADTVYHADRLAILHVPADPANLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  LPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             E +++   +N +IA++ PV   ++  E  A        +G      V  + +   DG 
Sbjct: 142 --ERETLTAQLNALIARDTPVRIALITPEALAAQPQLVRTIGAAPPAGVSAIRIVEIDG- 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 CGGTHV +TGEI    +          RR+
Sbjct: 199 -IDRQPCGGTHVRATGEIGRATVTKIEKKSRQNRRV 233


>gi|217077247|ref|YP_002334965.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037102|gb|ACJ75624.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 366

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 132/316 (41%), Gaps = 25/316 (7%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            I E      K+  +  ++PFY +  GGQLGD G   G+   L +        G   H  
Sbjct: 4   RIEEVLKEKGKIFAISSESPFYVDYKGGQLGDRGKI-GNASVLSVM----SKNGKIYH-- 56

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            ++R +   E  +   ID  ++  +  +H+  H+L      +  + +S  G  +  +   
Sbjct: 57  EIDREVDLGENDV--EIDLNHQLFVRQHHTGQHILSAVFEEL--ADISTVGFRMGFEYTT 112

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D+     I    L  +E+ VN II + + V   ++ +E+         L  K    VR+
Sbjct: 113 IDLNVPY-IVEELLDEVEERVNSIITECVDVQEILVEKEEVDRFPLRKKLSDKVEGMVRI 171

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           + +     G +  + CGG HV +TG+I LL I+    ++  + R+  + G +A  +    
Sbjct: 172 IKI-----GEYDYSPCGGYHVKNTGQIGLLKILKTEKVKGELTRVYFVAGFKAMEYFRKY 226

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNF 796
            + LK+++  L  S   V  +V  +  E ++   +L +   KL    +D       DV F
Sbjct: 227 SKILKNISVSLTSSIFEVEDKVRSLLSEVKEKSSRLENLAEKLACYKKDDLKKLKEDVYF 286

Query: 797 MSHIISEVDSKELKSV 812
           +       D + L+ +
Sbjct: 287 LQE-----DPEILRYI 297


>gi|309781113|ref|ZP_07675851.1| threonyl and alanyl tRNA synthetase domain protein [Ralstonia sp.
           5_7_47FAA]
 gi|308920179|gb|EFP65838.1| threonyl and alanyl tRNA synthetase domain protein [Ralstonia sp.
           5_7_47FAA]
          Length = 239

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 16/220 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTE 568
           +  D T FYA +GGQ GDTG  +  DG  + I D     +   V H   +     +L   
Sbjct: 28  IELDATVFYARSGGQAGDTGTLVLADGTTIAIADTVYSPDRQTVLHVPADNAGLTLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++  TID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  TAITATIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGG 687
             +  ++   +N++I +N PV   ++  E+  A       +G         + + + DG 
Sbjct: 142 --DRDTLTTQLNELIGRNTPVRIDLITPEELPAQPELVRTIGAAPPAGASAIRIIHIDG- 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                 CGGTHV +TGEI  + +          RR+ A+ 
Sbjct: 199 -IDRQPCGGTHVRATGEIGRVIVTKIEKKSRQNRRV-AVA 236


>gi|14520326|ref|NP_125801.1| fragment of alanyl-tRNA synthetase [Pyrococcus abyssi GE5]
 gi|5457541|emb|CAB49032.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 213

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 89/228 (39%), Gaps = 31/228 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + V  +   ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H 
Sbjct: 13  KEAKAKVVEIKDNALLLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEG-NVWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGL 617
           + E    +    + L ID+  R +L   H+  HLL H L+ +LG    +  GS ++ +  
Sbjct: 68  VKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGKWELVGSGMSVEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R+D+ + + +   + + I    N  + +   V                           R
Sbjct: 128 RYDIAYPENLNKYK-EQIISLFNKYVDEGGEVKIWW-------------------EGETR 167

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                Y          CGGTHV    EI  +  +  SSI  G +R+E 
Sbjct: 168 -----YTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 210


>gi|115434218|ref|NP_001041867.1| Os01g0120400 [Oryza sativa Japonica Group]
 gi|53791243|dbj|BAD52448.1| unknown protein [Oryza sativa Japonica Group]
 gi|53791322|dbj|BAD52587.1| unknown protein [Oryza sativa Japonica Group]
 gi|113531398|dbj|BAF03781.1| Os01g0120400 [Oryza sativa Japonica Group]
 gi|125524198|gb|EAY72312.1| hypothetical protein OsI_00165 [Oryza sativa Indica Group]
 gi|215740772|dbj|BAG96928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215766588|dbj|BAG98747.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 264

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 23/246 (9%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++ V +++Q+         G +  V+ D T FY + GGQ  DTG     G    I D 
Sbjct: 27  SSTATVVSLLQE--------EGGRRAVLVDSTVFYPQGGGQPADTGVISAGGGTRFIVDD 78

Query: 547 QKKAEGIFVHHAIVERG------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
            +  +G+  H+   E              S+ L +D + R   S  HSA HL+   +S I
Sbjct: 79  VRMKDGVVFHYGRFEDAGDGCNSGFSEGQSVSLEVDAERRNLNSRLHSAGHLIDICMSNI 138

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVTRIMNRED 658
             SH         PDG   +     P    + K   +E   N++I +   V+  I+  E+
Sbjct: 139 GLSHFDPGKGHHFPDGPFVEYKGVIPPDQLQDKKNELEKEANELITKGAKVLAYILPYEE 198

Query: 659 AIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           A      AL      D   R+V       G +    CGGTHV+    I  + + +   ++
Sbjct: 199 AAQLCGGALPSYISKDSTPRIVKF-----GDYPGGPCGGTHVADISIINNIKVTN-IRVK 252

Query: 718 AGIRRI 723
            G+ ++
Sbjct: 253 KGLTKV 258


>gi|83745752|ref|ZP_00942809.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Ralstonia solanacearum UW551]
 gi|207743664|ref|YP_002260056.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           IPO1609]
 gi|83727442|gb|EAP74563.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Ralstonia solanacearum UW551]
 gi|206595063|emb|CAQ61990.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 239

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 21/219 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           V  DQT FYA +GGQ GD G  +  DG  + I D    A+   + H   +    G+L   
Sbjct: 28  VELDQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSADRQTILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  VPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDRVRVVSVEYE 684
             E +++   +N +I ++ PV   ++  E   A  A               +R+V +E  
Sbjct: 142 --ERETLTAQLNALIERDTPVRIDLITPEALSAQPALVRTAGAAPPAGMAAIRIVEIEGV 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           D        CGGTHV +TGEI  + +          RR+
Sbjct: 200 D-----RQPCGGTHVRATGEIGPVLVTRIEKKSRQNRRV 233


>gi|323475009|gb|ADX85615.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus REY15A]
 gi|323477739|gb|ADX82977.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus HVE10/4]
          Length = 236

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 100/228 (43%), Gaps = 9/228 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHH 557
            E     V  +   V+ D+T FY   GG   DTG  I + G ++ +T+ ++   G  +H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDTGFLINERGEKINVTEAKRGENGEILHK 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I +   L     ++  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  
Sbjct: 73  -IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQA 129

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + D           L  + +  N+I+ + + +    + RE+A+   A   L  +   ++ 
Sbjct: 130 KDDFNVE---NKDTLIELINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIP 186

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  +    G        GG HV++T EI  + ++   +   G +R+  
Sbjct: 187 IWRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYY 232


>gi|260459528|ref|ZP_05807783.1| Threonyl/alanyl tRNA synthetase SAD [Mesorhizobium opportunistum
           WSM2075]
 gi|259035082|gb|EEW36338.1| Threonyl/alanyl tRNA synthetase SAD [Mesorhizobium opportunistum
           WSM2075]
          Length = 247

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 17/245 (6%)

Query: 494 AIVQQGEIVEEAVS-----GQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDV- 546
           A+ +    ++ A +       +  V+ D+T FYA +GGQ GD+G     DG R++I    
Sbjct: 7   ALFRDDAYLKTADATVVAVNDRGGVILDRTIFYATSGGQPGDSGALERADGSRIEIAATI 66

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             + +   VH     +  L     + L ID++ R  L   H+A HLL      +    ++
Sbjct: 67  TGETKDEIVHVQAPAQAALVVGEKVKLAIDWERRHLLMRMHAACHLLT----VVCPFPIT 122

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAA 665
             G+ ++ D  R D        + E   +   + D++  + P+ TR+++ E+ A   G  
Sbjct: 123 --GASVSEDDSRVDFDIPDASFTRE--EVTAGLMDLVRADHPIFTRLISDEELAANPGLV 178

Query: 666 ALLGTKYN-DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                +      R+  V   +     S  CGGTHV STGE+  ++I          RR  
Sbjct: 179 KSKNVRPPVGTGRIRLVCIGENASVDSQPCGGTHVKSTGEVGEIHIGKIEKKGRENRRFR 238

Query: 725 AITGQ 729
              G 
Sbjct: 239 IRFGP 243


>gi|145640916|ref|ZP_01796498.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|145274430|gb|EDK14294.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
          Length = 134

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 73/132 (55%), Gaps = 3/132 (2%)

Query: 768 RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           ++LQ +  K  +Q   + +    KI DV+ ++  +  +++K L+ ++D L+ ++ SG+I 
Sbjct: 3   KELQGLKEKAAMQAGSDFVKSAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGVIA 62

Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
              I  ++K ++++ VT DL  +  A +L  L A+ + GG GGGRP MA +GG       
Sbjct: 63  FASI-LDEKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPENVA 120

Query: 887 QAIAGVASFLKK 898
           QAI     +L K
Sbjct: 121 QAIKVAQDWLNK 132


>gi|302687664|ref|XP_003033512.1| hypothetical protein SCHCODRAFT_234457 [Schizophyllum commune H4-8]
 gi|300107206|gb|EFI98609.1| hypothetical protein SCHCODRAFT_234457 [Schizophyllum commune H4-8]
          Length = 491

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 148/438 (33%), Gaps = 59/438 (13%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           ++  +  E  +G  + V+   T  + E GGQ  DTG         ++    K+  G  +H
Sbjct: 71  KKAVLAPELPTGPILGVLLHDTVIFPEGGGQPTDTGSIRVGDKDWEVVQC-KRDGGHAIH 129

Query: 557 HAIVERGI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           +  V  G               + ++ D++ R      H++ HLL   L T L       
Sbjct: 130 YVRVPEGTSVDDALATFAPGTPVKVSFDWERRYDHMTLHTSQHLLSALLETRLQLPTLSW 189

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                P     +V   + +T  E+ SI++  N ++ +   V   +   E  +    +   
Sbjct: 190 SLTSYPQPCYVEV--PRSMTQEEIASIQNEANRLVFEGRQVHVEVQEMESKMEGDGSRAF 247

Query: 669 G----TKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           G    + Y     RV+ ++  D        C GTH+ S   + L  +    ++     R+
Sbjct: 248 GRGLPSDYTGGVHRVIVIDGVD-----RNPCCGTHLPSLHNLQLFLLPHTDALSRSTTRL 302

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
             + G R  +HL     +L + AS L      V  RV  + E+ ++     A +++    
Sbjct: 303 YFLAGPRLIAHLAAAHAQLTAAASTLTCGLPEVPARVALVVEDRKR-----ADKRVTDVE 357

Query: 784 EDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI---------SKE 833
            +L+ H   ++   ++ +      K+     D         +  L  I         SK 
Sbjct: 358 GELASHIANELLGELAQLPDGALMKKHLHRTDD----TPGALAFLTSIAAAFERDERSKG 413

Query: 834 KKASVLIVVTEDLLDRF------------NAVDLARLSAKVLGGGGGGGRPHMAQS---- 877
           +   +++  T                     V       K   G  GGGR          
Sbjct: 414 RPYLIVLSSTPSAQTSSSVSVVSVFGSHEKQVQGVGAVLKAKMGVKGGGRGPKWTGKFTG 473

Query: 878 ---GGPNGNKADQAIAGV 892
               G      ++A+AGV
Sbjct: 474 VWKAGREDAVVEEALAGV 491


>gi|260577397|ref|ZP_05845366.1| Threonyl/alanyl tRNA synthetase SAD [Rhodobacter sp. SW2]
 gi|259020400|gb|EEW23727.1| Threonyl/alanyl tRNA synthetase SAD [Rhodobacter sp. SW2]
          Length = 239

 Score =  131 bits (329), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 11/217 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           +  +V D + FYA  GGQ GD+G     G RL I    K               +     
Sbjct: 25  EGGIVLDASIFYATGGGQPGDSGLLRWPGGRLTIATAIKAEGDHIALVPAEPLALPPVGT 84

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            ++  +D+  R +    H+A HLL   +       +   G  I  D  R D    +P   
Sbjct: 85  VVMQHLDWTRRYRHMRVHTALHLLSVVIP------LPVTGGQIGADRGRLDFDMPEP--P 136

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYN-DRVRVVSVEYEDGG 687
            ++ +++  +N +I ++LPV    +   + A   G    L       + RV  +    GG
Sbjct: 137 EDIAALDAALNALIDRDLPVTESWITDAELAANPGLVKTLSVMPPVGQGRVRLIGIGQGG 196

Query: 688 V-HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV+ T EI  + I          RR+
Sbjct: 197 ARIDLQPCGGTHVARTAEIGRVEIGRIEKKGRQNRRV 233


>gi|194290242|ref|YP_002006149.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193224077|emb|CAQ70086.1| putative ALANYL-TRNA SYNTHETASE [Cupriavidus taiwanensis LMG 19424]
          Length = 237

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 89/231 (38%), Gaps = 20/231 (8%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAI 559
           +V  +  G    +  D+T  YA +GGQ GDT    + DG  + I D     +   + H  
Sbjct: 21  VVAASAEG----IELDETVCYARSGGQAGDTATLALADGRTVAIDDTVYADDRTRILHVP 76

Query: 560 VERGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                L R    + + ID+  R +L   H+  HLL   +       V   G  I+PD  R
Sbjct: 77  AAGAPLPRVGERVTVAIDWDRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDAAR 130

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYN-DRV 676
            D    +     +   + + +N +I  N  V  T I  +E A        +G        
Sbjct: 131 IDFDLPESTL--DKADLTERLNALIRANTAVRTTLITPQELAAQPDLVRTIGAAPPAGTA 188

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +  +E           CGGTHV++TGEI  + +          RR+ A+ 
Sbjct: 189 SIRIIEIPGV---DRQPCGGTHVANTGEIGAVVVTKIEKKSRTNRRV-AVA 235


>gi|118589044|ref|ZP_01546451.1| Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614]
 gi|118438373|gb|EAV45007.1| Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614]
          Length = 257

 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 18/227 (7%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQI-TDVQKKAEGIFVHHAIV 560
           E     ++  +V D+T FYA  GGQ GD+G   + DG +L+I T V ++ +   VH    
Sbjct: 37  EVIGVNERGGIVLDRTVFYATGGGQPGDSGALELEDGTKLEIATAVYEEDKKTIVHVPSE 96

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
            + +  T   +   ID+  R +L   H+A HLL  AL           G  I     R D
Sbjct: 97  GQNLPGTGSRVTAHIDWARRYRLMRIHTALHLLSVALP------FPVTGGQIGDPEGRLD 150

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRV 676
                     +  ++ + +N + + +  V T+ +  E+  A+       ++   + + +V
Sbjct: 151 FDMGDETI--DRDALVEKLNALASGDHEVTTQWITDEELDANPGLVKTMSVKPPRGSGKV 208

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R+V +    G       CGGTHV+ T EI +L +    +     RR+
Sbjct: 209 RLVRI----GSDVDLQPCGGTHVTRTSEIGVLDLGKIENKGKQNRRV 251


>gi|239831925|ref|ZP_04680254.1| Alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824192|gb|EEQ95760.1| Alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 247

 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 12/219 (5%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQIT-DVQKKAEGIFVHHAIVERGILR 566
           +   ++ DQT FYA +GGQ GD G     DG R++I   V  + +   +H     +    
Sbjct: 27  ETGGIILDQTNFYATSGGQPGDIGFFERADGSRIEIAATVTGENKNEIIHVPAEGQAAPA 86

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               LVL +D+  R +L   H+A HLL               G+ +  D  R D     P
Sbjct: 87  IGEKLVLHVDWPRRYKLMRMHTACHLLSVVCP------FPITGAAVGEDESRVDFDLPDP 140

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYE 684
             + E   + + + + ++ N  V  R ++ E+ +A+                R+  V   
Sbjct: 141 TYTKEF--VTEKLMERVSANDAVAIRWISDEEFLANPDIVKSKNVRPPVGLGRIRLVLIG 198

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + GV  S  CGGTHVS T E+  ++I          RR 
Sbjct: 199 ENGVVDSQPCGGTHVSETQEVGEIHIGKIEKKGKENRRF 237


>gi|227827921|ref|YP_002829701.1| threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.14.25]
 gi|229585188|ref|YP_002843690.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.27]
 gi|227459717|gb|ACP38403.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.14.25]
 gi|228020238|gb|ACP55645.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus M.16.27]
          Length = 236

 Score =  130 bits (328), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 9/228 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHH 557
            E     V  +   V+ D+T FY   GG   D G  I + G ++ +T+ ++   G  +H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDIGFLINERGEKINVTEAKRGENGEILHK 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I +   L     ++  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  
Sbjct: 73  -IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQA 129

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + D           L  + +  N+I+ + + +    + RE+A+   A   L  +   ++ 
Sbjct: 130 KDDFNVE---NKDTLIELINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIP 186

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  +    G        GG HV++T EI  + ++   +   G +R+  
Sbjct: 187 IWRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYY 232


>gi|298246147|ref|ZP_06969953.1| Threonyl/alanyl tRNA synthetase SAD [Ktedonobacter racemifer DSM
           44963]
 gi|297553628|gb|EFH87493.1| Threonyl/alanyl tRNA synthetase SAD [Ktedonobacter racemifer DSM
           44963]
          Length = 238

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 13/233 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A V++ +    AV G    V  D T F+   GGQ  D G    DG   Q+T V K    +
Sbjct: 11  AYVKEFDATVLAVEGN--AVALDATAFFPGGGGQPHDLGTLSQDGQTWQVTKVSKDERYV 68

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           +     VE         +   +D++ R  L   H+A H+L   +    G+ V+  G  + 
Sbjct: 69  WHQ---VEGEPPAIGSRVHGVLDWERRYALMRTHTAMHILCGVVWRDYGAKVT--GGNME 123

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-- 671
           P   R D    + + +  ++ IE  +N  IA+        + R +A  +           
Sbjct: 124 PLRGRMDFE-FENLRAELVQEIEQRINAEIAEARATRVYFLPRAEADQNPDLIRTKVSLL 182

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             D   V  +E E   +      GGTHV++T E+  + +V+  S     +R+E
Sbjct: 183 PADMTTVRVLEIEGLDI---QADGGTHVANTHEVERIRVVNYKSKGKINKRLE 232


>gi|149202516|ref|ZP_01879488.1| hypothetical protein RTM1035_07864 [Roseovarius sp. TM1035]
 gi|149143798|gb|EDM31832.1| hypothetical protein RTM1035_07864 [Roseovarius sp. TM1035]
          Length = 239

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 16/230 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           G +V     G    +V DQT FY   GGQ GD+G  +  G  L I    K          
Sbjct: 17  GVVVAHTPEG---GIVLDQTLFYPMGGGQPGDSGRLMCQGRSLPIATAVKAEGEQIALVM 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                +     +L   ID+  R +L   H+A HLL   +       +  +G  +     R
Sbjct: 74  AEPMALPPIGTALRQAIDWPRRHRLMRMHTALHLLSVVIP------LPVSGGAVAETRSR 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYND 674
            D    +     + +++ED +N ++ Q+LPV    +  +   A+       ++     + 
Sbjct: 128 LDFDMPEA--PEDRETLEDYLNQLVDQDLPVTEEWITDDALRANPGLVKTMSVAPPMGSG 185

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           RVR+V +      V     CGGTHV+ TGEI  L +          RR+ 
Sbjct: 186 RVRLVRIGQGTDQVD-LQPCGGTHVARTGEIGRLRLGKIEKKGRHNRRVY 234


>gi|146304928|ref|YP_001192244.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
 gi|145703178|gb|ABP96320.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
          Length = 235

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 92/213 (43%), Gaps = 9/213 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D+T F+   GG   DTG  I  G   ++T+V  K EG  + H + +   LR    + 
Sbjct: 28  VILDRTAFHPRGGGLESDTGALILGGNTYRVTEV--KFEGNEIVHVLEKLDGLREGDEVE 85

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID++ R ++   H+A+H++     +   + ++  G  ITP+  + D           L
Sbjct: 86  GRIDWERRYRMMRLHTASHIIASIAFSKYNALIT--GGNITPEYAKDDFNVE---NKDLL 140

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             I +  N+I  + + V    + RE+A+       L  K    +    +   +G      
Sbjct: 141 PKIVEEANEIAKRGIKVKVYFLPREEAMKIPGVVKLAEKMPPELETWRIVEIEG--IDIQ 198

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             GG HVS+T EI  + ++   +   G +R+  
Sbjct: 199 ADGGPHVSNTEEIGSIEVIKVENRGKGKKRLYY 231


>gi|300704680|ref|YP_003746283.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299072344|emb|CBJ43678.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 239

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/219 (26%), Positives = 89/219 (40%), Gaps = 21/219 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           V  DQT FYA +GGQ GD G  +  DG  + I D     +   + H   +    G+L   
Sbjct: 28  VELDQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSTDRQTILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  VPVSAAIDWPRRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDRVRVVSVEYE 684
             E +++   +N +I ++ PV   ++  E   A                  +R+V +E  
Sbjct: 142 --ERETLTAQLNALIERDTPVRIDLITPEALAAQPELVRTAGAAPPAGMTAIRIVEIEGI 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           D        CGGTHV +TGEI  + +          RR+
Sbjct: 200 D-----RQPCGGTHVRATGEIGHVLVTRIEKKSRQNRRV 233


>gi|119720099|ref|YP_920594.1| threonyl/alanyl tRNA synthetase, SAD [Thermofilum pendens Hrk 5]
 gi|119525219|gb|ABL78591.1| Predicted alanyl-tRNA synthetase-like metal-dependent hydrolase
           [Thermofilum pendens Hrk 5]
          Length = 252

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 11/214 (5%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E + G K  V  D+T F+   GGQ  D G  +       +     +  G   H   +E G
Sbjct: 36  ELLKGSKAYVELDRTIFHPLGGGQPSDEGSIVSPRGAFAVKK-AIRDRGRIRHWGRIEAG 94

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L    ++   ++++ R  +   H+A H+L +A+  + G  V    +   P       + 
Sbjct: 95  SLEVGDTVRCELNWEKRYLVMRLHTAGHILDYAMLRLYGRLVETLDAFHGPPEAYLVYSV 154

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRVVSV 681
           S+P    +   +E+  N ++ + L V  + + R +  A    A  +     ++  RVV +
Sbjct: 155 SEPP---DAYRLEEEANKVVERGLSVAVKFVPRGELQAHIYNAPNVSRLPPSEEYRVVEI 211

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              +        C GTHVS+T E+  + ++    
Sbjct: 212 PGVNA-----MPCTGTHVSNTREVGRIKVLGVER 240


>gi|284998171|ref|YP_003419938.1| Threonyl/alanyl tRNA synthetase, SAD [Sulfolobus islandicus
           L.D.8.5]
 gi|284446066|gb|ADB87568.1| Threonyl/alanyl tRNA synthetase, SAD [Sulfolobus islandicus
           L.D.8.5]
          Length = 236

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 9/228 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHH 557
            E     V  +   V+ D+T FY   GG   DTG  I + G ++ + + ++   G  +H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDTGFLINERGEKINVIEAKRGENGEILHK 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I +   L     ++  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  
Sbjct: 73  -IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQA 129

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + D           L  + +  N+I+ + + +    + RE+A+   A   L  +   ++ 
Sbjct: 130 KDDFNVE---NKDTLIELINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIP 186

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  +    G        GG HV++T EI  + ++   +   G +R+  
Sbjct: 187 IWRIVEMPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYY 232


>gi|227830643|ref|YP_002832423.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           L.S.2.15]
 gi|229579527|ref|YP_002837925.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.G.57.14]
 gi|227457091|gb|ACP35778.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           L.S.2.15]
 gi|228010241|gb|ACP46003.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.G.57.14]
          Length = 236

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 9/228 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHH 557
            E     V  +   V+ D+T FY   GG   DTG  I + G ++ + + ++   G  +H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTAFYPGGGGLENDTGFLINERGEKINVIEAKRGENGEILHK 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I +   L     ++  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  
Sbjct: 73  -IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQA 129

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + D           L  + +  N+I+ + + +    + RE+A+   A   L  +   ++ 
Sbjct: 130 KDDFNVE---NKDTLIELINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIP 186

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  +    G        GG HV++T EI  + ++   +   G +R+  
Sbjct: 187 IWRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYY 232


>gi|207725304|ref|YP_002255700.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           MolK2]
 gi|206590539|emb|CAQ37501.1| threonyl/alanyl trna synthetase protein [Ralstonia solanacearum
           MolK2]
          Length = 239

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 14/220 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568
           V  DQT FYA +GGQ GD G  +  DG  + I D    A+   + H   +    G+L   
Sbjct: 28  VELDQTVFYARSGGQAGDAGTLVLPDGQTVAIADTVYSADRQTILHVPADPADLGLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           + +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  VPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E +++   +N +I ++ PV   ++  E   A                      E  G+
Sbjct: 142 --ERETLTAQLNALIERDTPVRIDLITPEALSAQPELVRTAGAAPPAGMAAIRIVEIKGI 199

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAIT 727
                CGGTHV +TGEI  + +          RR + A+T
Sbjct: 200 D-RQPCGGTHVRATGEIGPVLVTRIEKKSRQNRRVVVALT 238


>gi|317404689|gb|EFV85081.1| Ala-tRNA(Pro) hydrolase [Achromobacter xylosoxidans C54]
          Length = 237

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 15/215 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVER-GILRTEMS 570
           V  DQT  YA +GGQ GD+G   + DG  L +TD     E   + H + E          
Sbjct: 29  VELDQTVCYARSGGQAGDSGTLTLADGRVLALTDTVYADERRRIVHVLAEGVAPPPVGER 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + ID+  R +L   H+  HLL   +           G  I+PD  R D    +     
Sbjct: 89  VTVAIDWPRRHRLMRLHTCLHLLGALVP------APVTGCSISPDSARIDFDLPESTL-- 140

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYN-DRVRVVSVEYEDGGV 688
           +   + + +N +I     V    +  E+ A        +G        R+  +E      
Sbjct: 141 DKADLTERLNALITAATDVTVNAITPEELAAQPDLVRTIGAAPPAGTERIRIIEIPGV-- 198

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                CGGTHV++TGEI  + +          RR+
Sbjct: 199 -DRQPCGGTHVANTGEIGAVTVTKIEKKSRTNRRV 232


>gi|237745019|ref|ZP_04575500.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|260494796|ref|ZP_05814926.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_33]
 gi|229432248|gb|EEO42460.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|260197958|gb|EEW95475.1| alanine-tRNA ligase [Fusobacterium sp. 3_1_33]
          Length = 375

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 119/298 (39%), Gaps = 26/298 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
           + + V    +  K   +   +PFY +  GGQLGD G    D   +++ +       + + 
Sbjct: 2   ENKKVNIKKNSDKTYEIL-NSPFYIDGKGGQLGDRGTI-SDANIIEVKE------NLVIL 53

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           +  +E G           ID + R  +S  H+A H+         G  ++  G  +  + 
Sbjct: 54  NKNLEDGEHA------YFIDEKRREDISQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEY 105

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR 675
              D+   K I+   +  +++ VN+ I +++ +  +I   E+A         +  K    
Sbjct: 106 TTVDLD-QKDISKEIIDKLDELVNNDIKKDIVIEEKIYTNEEAHKIENLRKAIKDKIKGD 164

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VR + +     G      C G HVS T +I +  I++  +++    R   + G+RA++  
Sbjct: 165 VRFIKI-----GDIDICACAGFHVSRTSQIEIFKIINYENVKGNYTRFYFLAGERAKADY 219

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
             + + +K L +        ++  +++   E  K ++    + L +   +L      +
Sbjct: 220 NKKHDIIKKLTNIFSCKDDEILEMLDKSLTE--KSKISTELKSLSMKYAELMVKDFEN 275


>gi|114707282|ref|ZP_01440179.1| Alanyl-transfer RNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537163|gb|EAU40290.1| Alanyl-transfer RNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 253

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 13/240 (5%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEG 552
           A +   E     + G+   +VFD+T FYA  GGQ GD G     DG ++QI +    +  
Sbjct: 20  AYLSTMEATLIRIEGENG-LVFDRTNFYATGGGQPGDRGFVEQSDGTKIQIVETAYSSNA 78

Query: 553 -IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
              V  A     +     +L L ID++ R +L   H+A HLL               G+ 
Sbjct: 79  RDVVMFAGESALLPELGETLTLHIDWKRRYKLMRMHTACHLLSVVCP------YPITGAA 132

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-- 669
           +  +  R D    +   +AE ++I + V +I+A N PV T+ +   +  A+         
Sbjct: 133 VGEEESRIDFDWPEA--AAEKQAISERVMEIVAANHPVFTKTITEAELEATPGLVKSANV 190

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
                   +  V   +     +  CGGTHVS TGE+  ++I          RR+    G 
Sbjct: 191 KPPKGTCVIRLVCIGENSSVDAQPCGGTHVSETGEVGEVHIGKIEKKGKANRRMRIRFGP 250


>gi|229581785|ref|YP_002840184.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.N.15.51]
 gi|228012501|gb|ACP48262.1| Threonyl/alanyl tRNA synthetase SAD [Sulfolobus islandicus
           Y.N.15.51]
          Length = 236

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 99/228 (43%), Gaps = 9/228 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHH 557
            E     V  +   V+ D+T FY   GG   DTG  I + G ++ + + ++   G  +H 
Sbjct: 13  KEFEGRVVKIEDSYVMLDKTSFYPGGGGLENDTGFLINERGEKINVIEAKRGENGEILHK 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I +   L     ++  I+++ R ++   H+A+H++     +  G+ ++  G  I+P+  
Sbjct: 73  -IDQNASLNVGDKVIGKINWERRYRMMRLHTASHIVAALAYSKFGALIT--GGHISPEQA 129

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + D           L  + +  N+I+ + + +    + RE+A+   A   L  +   ++ 
Sbjct: 130 KDDFNVE---NKDTLIELINEANEIVKKGIELKIYFLPREEALMIPAIVKLAGRNPPQIP 186

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +  +    G        GG HV++T EI  + ++   +   G +R+  
Sbjct: 187 IWRIVEIPG--IDIQADGGPHVNNTKEIGEIVLLKVENKGKGRKRVYY 232


>gi|297527295|ref|YP_003669319.1| Threonyl/alanyl tRNA synthetase SAD [Staphylothermus hellenicus DSM
           12710]
 gi|297256211|gb|ADI32420.1| Threonyl/alanyl tRNA synthetase SAD [Staphylothermus hellenicus DSM
           12710]
          Length = 239

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 14/212 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +VF+ T F+  +GG   DTG  + DG   ++  V        V H +     L+    + 
Sbjct: 28  IVFNTTIFHPRSGGVDHDTGKLVKDGGEYRVVQVLIDKNIGDVVHIVDGEHDLKVGDVVK 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R +L   H+A H+L   +    G+ ++  G  I+ +    D +  +       
Sbjct: 88  QVIDWNRRYKLMRLHTAAHILASIMYNEHGALIT--GGNISEEYAYDDYSL-EEFNKELF 144

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVH 689
             I +  N II +N+ V    + RE+A+       L  +     D +R+V +   D    
Sbjct: 145 LDIVEKANQIIKRNIEVKIYWLPREEALKIPGIVKLAKRTPPNIDVLRIVEIPGVD---- 200

Query: 690 SSALCGGTHVSSTGEIM---LLYIVSESSIRA 718
                GG HV +TGEI     L IV++   R 
Sbjct: 201 -IQADGGPHVKNTGEIGEIVPLKIVNKGRKRK 231


>gi|257095480|ref|YP_003169121.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048004|gb|ACV37192.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 245

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 24/225 (10%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGI--- 564
            +  V  ++T FY   GGQ GD G  I  DG  LQI D +K A+   + H          
Sbjct: 23  DERGVQLERTIFYPLGGGQAGDRGALILPDGSDLQIADTRKGAQAGEILHVPAAGQEARL 82

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             +     +   +D   R++    H+ THLL   +          NG  IT D  R D  
Sbjct: 83  AQISIGQIVHARLDAHRRQRHMRFHTTTHLLCALIPH------PVNGCSITCDYARLDFH 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRV 678
            ++P+    L +    +  ++ +  PV  R +   +  A+       ++   +   RVRV
Sbjct: 137 MAEPLDKEALTA---GLARLVGEARPVRQRWIAESELDANPGLVRSMSVQPPRGLGRVRV 193

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + +E  D        CGGTHVS+T EI  + +       A  RR+
Sbjct: 194 IEIEGVDL-----QPCGGTHVSNTAEIGAVVVTRIEKKSAMTRRV 233


>gi|309777073|ref|ZP_07672039.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915143|gb|EFP60917.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 385

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 137/382 (35%), Gaps = 31/382 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++E              T FY E GG   D G          + D  K  EG   H   
Sbjct: 17  KVLEVREDNGLFWHACKDTIFYKEGGGMASDIGMI----DEHMVLD-LKYEEGHMWHLLD 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 + E ++ ++++   R +    H+A HL+   L  +       +      + + F
Sbjct: 72  T-----KLEGTVFMSVNLHERFRKCQIHTAQHLISAVLGNVYKVETLAHHVGDEENDIEF 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           +        + EL+      N +I  +L V  +   R +A        +     D +RVV
Sbjct: 127 NFEDFTDKMAFELQ---VLCNGLIRDDLDVSIQYPTRVEASKMAKGKNID---RDDLRVV 180

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G     +CG  HV S   + +LYI        G  +I+ + G +    +  + 
Sbjct: 181 RI-----GALDYNMCGCMHVPSLRYLQMLYISGYEKSAKGY-KIKYLVGDQLLDCVTRRY 234

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFM 797
           + L   +  L VS   V   V  +  E R+L   +I  K+K              DV  +
Sbjct: 235 KVLDEASRSLAVSHLYVNTGVNRLINETRQLNRDVIVWKQKYYEMFAKELGQCTEDV--I 292

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
            H   ++D K    V   + +  +  +I +          V++   +D+   F++  + +
Sbjct: 293 VHFFDDIDVKSEADVAKYVTEHYKKAVIFVAKTYDN--VHVVVAAHKDM--DFDSAKVFK 348

Query: 858 LSAKVLGGGGGGGRPHMAQSGG 879
             A      GGG R  ++Q GG
Sbjct: 349 EIADAYHLKGGGNR-QLSQGGG 369


>gi|167562141|ref|ZP_02355057.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           oklahomensis EO147]
          Length = 243

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAEGIFVHHAIVER 562
             +  +  +  D+T FY   GGQ GD+G   +  G  L + D +K K EG     A+   
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGMLTLPGGATLAVADTRKAKFEGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQEALAAGVKPGDAVVAEIDWTPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGT 670
           D  R D    +PI   +   ++  + +++    PV T  +  ++           ++   
Sbjct: 134 DYARIDFATVEPI---DRAFVDARLAELVGGAHPVTTEWITDDEMAERPDLVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIGGIDL-----QPCGGTHVRNTAEIGGLRVAKLEKKSARTRRL 238


>gi|240103692|ref|YP_002960001.1| Alanyl-tRNA synthetase related protein [Thermococcus gammatolerans
           EJ3]
 gi|239911246|gb|ACS34137.1| Alanyl-tRNA synthetase related protein [Thermococcus gammatolerans
           EJ3]
          Length = 213

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   + +  ++  ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H +
Sbjct: 14  EAKAKVLEVKENALLLDQTIFYPTGGGQPHDRGWING----VEVLDVYKDEEG-NVWHVV 68

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E    +    + L ID+  R +L   HSA HLL H L+ +L       GS ++ +  R+
Sbjct: 69  KEPEKFKPNQEVELKIDWDYRYKLMRIHSAMHLLEHVLNLVLPGKWELYGSGMSVEKGRY 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+ + + +   + + IE   N ++ +   +                           R  
Sbjct: 129 DILYPENVNKWKQEIIET-FNRLVDEGGEMKIWW-------------------EGETR-- 166

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              Y          C GTHV    EI  L     SS+  G +R+E
Sbjct: 167 ---YTQIRDFEVIPCAGTHVRDIREIGHLKKFKRSSLGKGKQRLE 208


>gi|167569390|ref|ZP_02362264.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           oklahomensis C6786]
          Length = 243

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAEGIFVHHAIVER 562
             +  +  +  D+T FY   GGQ GD+G   +  G  L + D +K K EG     A+   
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGMLTLPGGATLAVADTRKAKFEGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQEALAAGVKPGDAVVAEIDWTPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG----AAALLGT 670
           D  R D    +PI   +   ++  + +++    PV T  +  ++           ++   
Sbjct: 134 DYARIDFATVEPI---DRAFVDARLAELVGGAHPVTTEWITDDEMAERPDLVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +   D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIGGIDL-----QPCGGTHVRNTAEIGGLRVAKLEKKSARTRRL 238


>gi|195634791|gb|ACG36864.1| alanyl-tRNA synthetase [Zea mays]
          Length = 263

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 20/229 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE---- 561
             G +V VV D T F+ + GGQ  DTG     G R  + DV+ K +G+  H+   E    
Sbjct: 38  EEGGRVAVVLDATVFHPQGGGQPADTGVISAGGARFLVEDVRAK-DGVVFHYGRFEGTEQ 96

Query: 562 --RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               + +   ++ L +D + R   S  HSA HLL   +  +   H+        PDG   
Sbjct: 97  GCGTVFKEGETVSLQVDAERRSFNSRLHSAGHLLDICVHNVGLFHLEPGKGYHFPDGPF- 155

Query: 620 DVTHSKPITSAEL----KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND- 674
            V +   I   ++      +E   N +I++   V+  +   E+A      +L      D 
Sbjct: 156 -VEYKGIIPPDQIPVKKNELEREANRLISEGAKVLASVFPYEEAAILCGGSLPSYISKDS 214

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             R+V      GG      CGGTHV+    I  L + +   ++ G+ ++
Sbjct: 215 NPRIVKFGDNPGG-----PCGGTHVADISIINSLKVTN-IRVKKGLTKV 257


>gi|94311445|ref|YP_584655.1| Ala-tRNA(Pro) hydrolase [Cupriavidus metallidurans CH34]
 gi|93355297|gb|ABF09386.1| Alanyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 238

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 85/225 (37%), Gaps = 15/225 (6%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVE 561
              ++  +  +  DQT  YA +GGQ GDTG     DG  + + D     +   + H    
Sbjct: 20  ATVLAVSEAGIELDQTVCYARSGGQAGDTGTLTTADGRIVTLADTVYADDRQRILHVPAS 79

Query: 562 RGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               L+    + + ID+  R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 80  DAPALQAGDRVEVKIDWTRRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDSARID 133

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYN-DRVRV 678
               +     +   + + +N +I    PV    +  E+ A        +G         +
Sbjct: 134 FDLPESTL--DKAVLTEQLNALINAKTPVTIDRITPEELAAQPDLVRTIGAAPPAGTSTI 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             +E           CGGTHV++TGEI  + +          RR+
Sbjct: 192 RIIEIPGV---DRQPCGGTHVANTGEIGAVAVTKIEKKSRTNRRV 233


>gi|194690850|gb|ACF79509.1| unknown [Zea mays]
 gi|219885957|gb|ACL53353.1| unknown [Zea mays]
          Length = 263

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 20/229 (8%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE---- 561
             G +V VV D T F+ + GGQ  DTG     G R  + DV+ K +G+  H+   E    
Sbjct: 38  EEGGRVAVVLDATVFHPQGGGQPADTGVISAGGARFLVEDVRAK-DGVVFHYGRFEGTEQ 96

Query: 562 --RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               + +   ++ L +D + R   S  HSA HLL   +  +   H+        PDG   
Sbjct: 97  GCGTVFKEGGTVSLQVDAERRSFNSRLHSAGHLLDICVHNVGLFHLEPGKGYHFPDGPF- 155

Query: 620 DVTHSKPITSAEL----KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND- 674
            V +   I   ++      +E   N +I++   V+  +   E+A      +L      D 
Sbjct: 156 -VEYKGIIPPDQIPVKKNELEREANRLISEGAKVLASVFPYEEAAILCGGSLPSYISKDS 214

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             R+V      GG      CGGTHV+    I  L + +   ++ G+ ++
Sbjct: 215 NPRIVKFGDNPGG-----PCGGTHVADISIINSLKVTN-IRVKKGLTKV 257


>gi|152974311|ref|YP_001373828.1| threonyl/alanyl tRNA synthetase SAD [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023063|gb|ABS20833.1| Threonyl/alanyl tRNA synthetase SAD [Bacillus cytotoxicus NVH
           391-98]
          Length = 238

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 12/232 (5%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
            ++QG  + + +  +K  ++ D+T FY   GGQ  D G    + I   +  V++    I 
Sbjct: 11  YIKQGFSIIKNIENEK--IILDKTIFYPTGGGQPCDIGYLKQNKIIFPVNKVERVDNEII 68

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                 E+        + L +D+  R +    HS  H+    L     +     G+ I  
Sbjct: 69  HFIDNSEKLQYGP---VELVLDWNRRYKFMRYHSLLHVFAGYLYNEYDALT--LGNQIFE 123

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--AALLGTKY 672
           +  R D+  +  ++  E ++IE  +N+II  N  + +RI+NR +          +L    
Sbjct: 124 NRARIDIQFNAQLSDTEFQNIEKRINEIIQDNHQIKSRIINRCEGTNLDGKIKTVLSLIP 183

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           N+   +  +E E+        C GTHVS T EI    I+S  S   G RR E
Sbjct: 184 NNINNIRLIEIENL---DEQPCNGTHVSETKEIGSFQIISNKSKGKGKRRFE 232


>gi|167580389|ref|ZP_02373263.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis TXDOH]
          Length = 243

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIF----VHHA 558
             +  +  +  D+T FY   GGQ GDTG     G       D +K K +G      VH  
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
              +  L    +   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVKPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           + +R D    +PI   +   +E  + +++    PV T  +  E+  A        ++   
Sbjct: 134 EYVRIDFATVEPIDREQ---VETRLAELVGGAHPVTTEWITDEEMAARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|171185920|ref|YP_001794839.1| threonyl/alanyl tRNA synthetase SAD [Thermoproteus neutrophilus
           V24Sta]
 gi|170935132|gb|ACB40393.1| Threonyl/alanyl tRNA synthetase SAD [Thermoproteus neutrophilus
           V24Sta]
          Length = 238

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 11/229 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +     EVV DQT F+   GG   DTG     G     T V K   G  V H +
Sbjct: 15  EFNATVLELSGNEVVLDQTAFHDGTGGVQADTGVLYYGGESYAATAVHK---GGEVVHVL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +   ++   +D+  R +    H+A H+L   L     + ++  G  ITP+  R 
Sbjct: 72  DRSPSFKPGEAVRGVVDWDKRYRKMRLHTAAHILSAVLYRRHNALIT--GGDITPEYARD 129

Query: 620 DVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRV 676
           D      + + +   +      N+I  + + V    + RE+A+       L  K   +  
Sbjct: 130 DFNVEGDMATVKRIFEEAVAEANEIARRGIEVKVYWLPREEALKIPGVVKLAEKMPPEVP 189

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           R+  VE     +      GG HV +T EI  + I+   +   G +RI  
Sbjct: 190 RLRIVEIPGVDI---QADGGPHVRNTSEIGTIKILKVENRGRGKKRIYY 235


>gi|224086602|ref|XP_002195068.1| PREDICTED: hypothetical protein LOC100190320 [Taeniopygia guttata]
          Length = 537

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 113/291 (38%), Gaps = 16/291 (5%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I           ++L++D++ R      HS  HL+      + G   +           
Sbjct: 205 CIFVPAAQEPGAEVLLSLDWERRFDHMQQHSGQHLISAIAEQMFGFKTTSW----ELGRQ 260

Query: 618 RFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDR 675
           R  +    P +T+ +++++E +VN+ I   +PV  R +  +D    +  +  L   +   
Sbjct: 261 RSVIELDTPLVTAEQVEALEKSVNEKIRDRVPVTVRELAADDPEVETVKSRGLPDDHVGP 320

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           VRVV ++  D     S LC GTHVS+  ++ ++ ++     +     +  + G R    +
Sbjct: 321 VRVVDIKGID-----SNLCCGTHVSNLSDLQVIKLLGVEKGKKNKTNLVFLAGNRVLKSI 375

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKIAD 793
                  K+L S LK   G  V  V+ +       +   ++  R + + +      K A 
Sbjct: 376 EQSHSTEKALTSLLKNGPGEHVEAVKRLQSSVKLLQKNNLNLLRDIAVLIARDFKSKPAP 435

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                    E DS+ +  + + +        ++ + +  EK+A + ++   
Sbjct: 436 KQLFVLHRKEGDSEFMNIIANEI---GTEETLLFLTVGDEKEAGLFLLAGP 483


>gi|325968851|ref|YP_004245043.1| threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta moutnovskia
           768-28]
 gi|323708054|gb|ADY01541.1| Threonyl/alanyl tRNA synthetase SAD [Vulcanisaeta moutnovskia
           768-28]
          Length = 240

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 14/231 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     V      V  DQT F+  +GG   DTG  I  G    I +V K++E     H +
Sbjct: 15  EFDATVVRIDGNRVWLDQTLFHPRSGGVANDTGKLIWQGEEYVIKEVIKESEDAV--HIL 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R   S+   ID+  R +L   H+ATH++         + V+  G  ITP+  R 
Sbjct: 73  DREPRFRVGDSVHGIIDWDRRYRLMRLHTATHIIAALAYKDYNALVT--GGDITPEYARD 130

Query: 620 DV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YND 674
           D   T S        + +    N+++ + +PV    + +E+A+       L  +     +
Sbjct: 131 DYNLTLSGDALRKAFQDLIAEANEVVKRGIPVKIYFLKKEEALKIPGIVKLAEREPPPGE 190

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             R+V +E  D         GG HV++T EI  +  +   S     +R+  
Sbjct: 191 EWRIVEIEGID-----IQADGGPHVANTREIGEIVFLKSESRGKDKKRVYY 236


>gi|296329384|ref|ZP_06871884.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153504|gb|EFG94322.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 373

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 108/278 (38%), Gaps = 25/278 (8%)

Query: 518 TPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +PFY +  GGQLGD G    D   +++ +       + +    +E G           I+
Sbjct: 21  SPFYVDGKGGQLGDRGTIF-DANIVEVKE------NLVILDKDLEDG------EYSYFIN 67

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R  +   H+A H+         G  ++  G  +  +    D+   K I+   +  +E
Sbjct: 68  EKRREDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKEIIDKLE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           + VN  I  ++ +   I   E+A         +  K    +R + +     G      C 
Sbjct: 125 ELVNKDIKADIVIEEEIYTNEEAHKIENLRKAIKDKIKGDIRFIKI-----GNIDICACA 179

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HVS T EI +  +++  +++    R   + G+RA++    + + +K L +        
Sbjct: 180 GFHVSRTSEIEIFKLINYENVKGNYTRFYFLAGERAKADYNKKHDIIKKLTNVFSCKDDE 239

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           ++  +++   E  K ++    + L +   +L      +
Sbjct: 240 ILEMLDKSLAE--KAKITTELKSLSIKYAELMVKDFEN 275


>gi|308160674|gb|EFO63149.1| Metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Giardia lamblia P15]
          Length = 401

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 19/269 (7%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V V    + F+ ++GGQLGD G   G    L +       +   +H           +  
Sbjct: 25  VYVRLSHSYFFPQSGGQLGDVGSIGG----LPVITTNCDEDHRPLHLMATAPPS---DTE 77

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           L  +++   RRQ SI+H+  H+  +       +  S     + P+     +  S  +   
Sbjct: 78  LDCSVNAVYRRQNSISHTGQHIFSNVAEQCFQAITSSY--TMGPE--LSTLELSVKLDMD 133

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSVEYEDGGV 688
           +L  IE+  NDII Q +PV + +++ E+ +    G +       N  +R+V +E  D   
Sbjct: 134 KLLEIENRTNDIIRQCIPVKSILIHSEEELGQYSGLSRSKLKSLNFPLRIVDIEGVD--- 190

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               LC GTH S+TGE  L+ +    S R G+ +++   G RA S +  + + L  + + 
Sbjct: 191 --VCLCCGTHASNTGECGLVKVFGCESSRGGV-KVQFAVGDRAISLINNRLKTLSIICAS 247

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           L      VV  VE +  E + L+      
Sbjct: 248 LTTGHDAVVKSVETLLSEGKALRAQEKSL 276


>gi|183011894|gb|ACC37876.1| alanyl-tRNA synthetase [Archisepsis priapus]
          Length = 112

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)

Query: 111 WDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWS 162
           W+ LT+   L + RLY+T +  DE        E  ++W  + GL  + I+  +  DNFW 
Sbjct: 1   WEFLTERLGLPKDRLYVTYFGGDEASGLEPDYECKQMWTDL-GLKPEHILPGSMKDNFWE 59

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216
           M ETGPCGPCSE+ FD+           + +    +EIWNLVF+Q+ ++     
Sbjct: 60  MGETGPCGPCSELHFDRIGG-RSVPELVNMDDPDVLEIWNLVFIQYNREADSSL 112


>gi|160899658|ref|YP_001565240.1| threonyl/alanyl tRNA synthetase SAD [Delftia acidovorans SPH-1]
 gi|160365242|gb|ABX36855.1| Threonyl/alanyl tRNA synthetase SAD [Delftia acidovorans SPH-1]
          Length = 236

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 90/235 (38%), Gaps = 20/235 (8%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEG 552
           A + + E    AVS + VE   D T  YA +GGQ GDTG   + DG  L + D     + 
Sbjct: 12  AYLDRCEATVTAVSAEGVE--LDATVCYARSGGQAGDTGTLTLADGRSLALIDTVYADDR 69

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             + H +      +    + + ID+  R +L   H+  HLL   +       V   G  I
Sbjct: 70  QRILHVLQTDAPPQVGERVQVAIDWDRRHRLMRLHTCLHLLGVLVP------VPVTGCSI 123

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTK 671
           +PD  R D    +     +   + + +N +I  +  V    +  E  A         G  
Sbjct: 124 SPDSARLDFDLPESTL--DKTDLTERLNALITASHAVNVDRITPEQLAAQPDLVRTAGAA 181

Query: 672 YND---RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  +R++ +   D        CGGTHV ST EI  + +          RR+
Sbjct: 182 PPGGTSTIRIIDIPGLD-----RQPCGGTHVRSTAEIGTVAVTKIEKKSRTNRRV 231


>gi|167618495|ref|ZP_02387126.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis Bt4]
          Length = 243

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIF----VHHA 558
             +  +  +  D+T FY   GGQ GDTG     G       D +K K +G      VH  
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDTGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
              +  L    +   ++V  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAPLASGVKPGDAVVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           + +R D    +PI   +   +E  + +++    PV T  +  ++  A        ++   
Sbjct: 134 EYVRIDFATVEPIDREQ---VETRLAELVGGAHPVTTEWITDDEMAARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|73542031|ref|YP_296551.1| Ala-tRNA(Pro) hydrolase [Ralstonia eutropha JMP134]
 gi|72119444|gb|AAZ61707.1| Ala-tRNA(Pro) hydrolase [Ralstonia eutropha JMP134]
          Length = 237

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 89/225 (39%), Gaps = 15/225 (6%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVE 561
              ++     +  D+T  YA +GGQ GDT    + DG  + ITD     +   + H   E
Sbjct: 19  ATVLAVSDAGIELDETICYARSGGQAGDTATLTLEDGRTMSITDTVYADDRARILHVPAE 78

Query: 562 RGIL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              L R    + +TID++ R +L   H+  HLL   +       V   G  I+PD  R D
Sbjct: 79  GTALPRVGERVTVTIDWERRHRLMRLHTCLHLLGSLIP------VPVTGCGISPDSARID 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYN-DRVRV 678
               +     +   + + +N +I  N  V VT I  +E A        +G         +
Sbjct: 133 FDLPESTL--DKAVLTEQLNALIRANTAVRVTLITPQELAAQPELVRTIGAAPPAGTSSI 190

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             +E           CGGTHV++T EI  + +          RR+
Sbjct: 191 RIIEIPGV---DRQPCGGTHVANTSEIGAVVVTKIEKKSRTNRRV 232


>gi|19703862|ref|NP_603424.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714020|gb|AAL94723.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 373

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 108/278 (38%), Gaps = 25/278 (8%)

Query: 518 TPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
           +PFY +  GGQLGD G    D   +++ +       + +    +E G           I+
Sbjct: 21  SPFYVDGKGGQLGDRGTIF-DANIVEVKE------NLVILDKDLEDG------EYSYFIN 67

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            + R  +   H+A H+         G  ++  G  +  +    D+   K I+   +  +E
Sbjct: 68  EKRREDIRQQHTAQHIFSAEAYNNFG--LNTVGFRMAEEYTTVDLD-QKDISKEIIDKLE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           + VN  I  ++ +   I   E+A         +  K    +R + +     G      C 
Sbjct: 125 ELVNKDIKADIVIEEEIYTNEEAHKIENLRKAIKDKIKGDIRFIKI-----GNIDICACA 179

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HVS T EI +  +++  +++    R   + G+RA++    + + +K L +        
Sbjct: 180 GFHVSRTSEIEIFKLINYENVKGNYTRFYFLAGERAKADYNKKHDIIKKLTNVFSCKDDE 239

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           ++  +++   E  K ++    + L +   +L      +
Sbjct: 240 ILEMLDKSLAE--KAKIATELKSLSIKYTELMVKDFEN 275


>gi|255024324|ref|ZP_05296310.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 149

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKS 811
             +VE++  + R+++  +     +L     +       +I  V  ++  ++  D  +L+ 
Sbjct: 1   PQKVEQLQADLREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 60

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGG 870
            +D  + K   GI++L  +  + K +++  V+E+ +   ++A  L +  A    GG GGG
Sbjct: 61  FVDNWKDKKIGGILVLGAVQGD-KVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGG 118

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898
           RP MAQ+GG N  +   A+  V++++K+
Sbjct: 119 RPDMAQAGGKNPAELGAALDYVSTWVKE 146


>gi|224823924|ref|ZP_03697033.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
 gi|224604379|gb|EEG10553.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
          Length = 236

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 10/217 (4%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQK-KAEGIFVHHAIVERGILR 566
            +  VV ++T  Y   GGQ GD       DG+ L + D ++ KA    VH    +   L 
Sbjct: 22  DEQGVVLEETLCYPLGGGQPGDCATLSTTDGMVLTVQDTRRDKATRDIVHLVAADAPRLA 81

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               + L +D+  R +    H+  HLL   +           G  +T +  R D    + 
Sbjct: 82  EGTPVTLELDWSRRHRHMRVHTCLHLLSVVIK------AGVTGGNLTTESGRLDFDLPEG 135

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
           +   +   IE  +N +IA++  V   +M   +A+ +    +        + +  +   + 
Sbjct: 136 M-VLDRDEIERELNRLIAEDRAVKV-VMTSGEALKAQPELIKTMSVTPPLELPEIRLIEV 193

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV+ TGEI  + +    S  A  +R+
Sbjct: 194 DGVDLQPCGGTHVARTGEIGPVVVKKIESKGARNKRV 230


>gi|145332595|ref|NP_001078163.1| ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA
           and related compounds / nucleic acid binding /
           nucleotide binding [Arabidopsis thaliana]
          Length = 256

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 22/227 (9%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           ++ ++ + T F+ + GGQ  DTG  +  G  ++  + DV+ K +GI +H+ + E     +
Sbjct: 33  RIALILESTVFHPQGGGQPSDTGLIVFSGSDLKFSVQDVRSK-DGIVLHYGVFEGSNPES 91

Query: 568 EM------SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            +       + LT+D   R+  S  HSA HLL   +  +   H+        PDG   + 
Sbjct: 92  GIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLDMCMQKVGLGHLEPGKGYHFPDGPFVEY 151

Query: 622 THSKPITSAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRV 676
             S P    ++  K +E   N++I++   V   I+  E+A      +L    Y       
Sbjct: 152 KGSVPQEEFQVKQKELEAEANELISKGGKVYAAILPYEEASVLCGGSL--PDYISKGSTP 209

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R++ +    G       CGGTHVS+  +I+ + I  +   + G+ ++
Sbjct: 210 RIIKLGDSPG-----CPCGGTHVSNLSDIISMKIT-QMRTKKGMTKV 250


>gi|298291392|ref|YP_003693331.1| threonyl/alanyl tRNA synthetase SAD [Starkeya novella DSM 506]
 gi|296927903|gb|ADH88712.1| Threonyl/alanyl tRNA synthetase SAD [Starkeya novella DSM 506]
          Length = 237

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 19/220 (8%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGIL-RT 567
           +  +V D+T FYA AGGQ GD G  +  +G  + I         + + H  V   IL   
Sbjct: 26  EGGIVVDRTVFYATAGGQPGDRGTLLRTNGTEIPIETAIYGPSKVDIVHVPVGGPILPEP 85

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++ L +D+  R +    H+A HLL  AL           G  I  +  R D    +  
Sbjct: 86  GEAVTLRLDWATRHRRMRMHTALHLLSVALP------FPVTGGSIGEEESRLDFDIPEAG 139

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEY 683
              +   I   + ++IA    V  R ++ E+ +A+       A+       +VR+V +  
Sbjct: 140 LDKD--EITARLAEMIASGAKVSERWISDEELLANPGLVKTMAVKPPMGTGKVRLVEIAG 197

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            D        CGGTHV S  EI  + +          RR+
Sbjct: 198 LDL-----QPCGGTHVRSLEEIGAVQVSKIEKKGQQNRRV 232


>gi|291442032|ref|ZP_06581422.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291344927|gb|EFE71883.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 324

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 7/192 (3%)

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE+  +  + ++LPV  R M   +A   GA AL    Y ++VRVV +    GG  S  L
Sbjct: 56  EIEEAADQALRRDLPVGVRWMTLPEAKELGALALFDETYGEKVRVVEI----GGAWSREL 111

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGGTHV    +I  + + SESS+ AG+ R+EA  G     +L  + + +  +A  L+  +
Sbjct: 112 CGGTHVEHASQIGTVVLTSESSVGAGMCRLEAAVGIEGFGYLARERDPVTRIAEQLQAPR 171

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKS 811
             +   +  + +  +     + + + Q              DV+    + +  D    ++
Sbjct: 172 AELPYHIAGLPDRLKSADRENQRIREQADRARASDLAADATDVDGTPVVTATTDGDA-QA 230

Query: 812 VMDALQKKIQSG 823
           +  A++ ++ + 
Sbjct: 231 LAIAVRDRLPAA 242


>gi|56067661|gb|AAV70298.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067663|gb|AAV70299.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067741|gb|AAV70338.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067745|gb|AAV70340.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067747|gb|AAV70341.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 161

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVVRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
            NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAM 161


>gi|56067733|gb|AAV70334.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067735|gb|AAV70335.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 162

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVMRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
            NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAM 161


>gi|316932601|ref|YP_004107583.1| Threonyl/alanyl tRNA synthetase SAD [Rhodopseudomonas palustris
           DX-1]
 gi|315600315|gb|ADU42850.1| Threonyl/alanyl tRNA synthetase SAD [Rhodopseudomonas palustris
           DX-1]
          Length = 249

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 25/237 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVH 556
           +  IV+++ +G    V  ++T FYAE+GGQ GD G  + D    L + D Q     + + 
Sbjct: 20  ETTIVDQSDAG----VCLEKTIFYAESGGQPGDVGELVLDSGESLLVADAQYIPGRLRIA 75

Query: 557 HAIVERGILR-TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           H +            ++  ID++ R +L   H++ HLL   +           G  I PD
Sbjct: 76  HVLATPPDRSLIGAKVLARIDWERRYRLMRLHTSLHLLCSLV------DAPVTGCAIYPD 129

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTK 671
             R D      +   + +++ D +N ++  +LPV     + +    +        +   +
Sbjct: 130 YARLDFDIESAL---DRQTLTDRLNALVRNDLPVEIECRSADVLSAEPSLVRTVQVALPQ 186

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE-AIT 727
              ++R+VS+     G      CGGTHV STGEI  L + +        RR++ A+T
Sbjct: 187 TGKQLRLVSI-----GEVDRQPCGGTHVRSTGEIGSLAVTNVEKKGRRNRRVKIALT 238


>gi|148908305|gb|ABR17266.1| unknown [Picea sitchensis]
          Length = 258

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 15/244 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEG 552
           +  +   +     G+++ V+ D T  Y + GGQ  D G    + + ++ ++ DV+ +  G
Sbjct: 21  LKSRASFISMVADGERLAVIVDSTILYPQGGGQPADIGFIYDLDERLKFRVQDVRSR-NG 79

Query: 553 IFVHHAIV-----ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           +  H+        E+   +    ++L++D   R   S  HSA HLL   +  I  + +  
Sbjct: 80  VVFHYGYFDSPLSEQSTFQKGQEVILSVDEHRRGLNSRLHSAGHLLDVCMHNIGLASLES 139

Query: 608 NGSCITPDGLRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                 PDG   +     P    E K  ++E     +++    V   I+  E A A    
Sbjct: 140 GKGHHFPDGAFVEYKGKIPADDLERKREALEKEAKRLVSIGGKVSAAIVPYESAAALCGG 199

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            L      D    + +  ++ G      CGGTHV+   +I ++  VS+  +R G+ ++  
Sbjct: 200 ELPEYIPKDTTPRIVMLGDNLG----CPCGGTHVADISDIGIIK-VSQIRVRKGLTKVSY 254

Query: 726 ITGQ 729
             G 
Sbjct: 255 TIGP 258


>gi|56067749|gb|AAV70342.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067751|gb|AAV70343.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 5/148 (3%)

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGI 539
            +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +  
Sbjct: 2   YVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESS 61

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++ V     G  +H  +VE G LR    +   +D   R+    NHSATH L+H+L  
Sbjct: 62  EFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLK 119

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +LG    Q GS + P+ LRFD T+   +
Sbjct: 120 VLGQDTDQRGSLVVPEKLRFDFTNKSAM 147


>gi|284165925|ref|YP_003404204.1| threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284015580|gb|ADB61531.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 285

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 102/279 (36%), Gaps = 24/279 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
               E  S     V  + + FY  + GQ  D G  +GD     +  V  +       H +
Sbjct: 14  RFETEVTSIDGRTVWLETSYFYGTSDGQPADRGT-VGDAAVTDVRLVDGEQA-----HVL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R    ++ +ID+  R      H+A H+ + A            G  I  + +  
Sbjct: 68  AAEPSFRAGHRVLCSIDWSFRMYCMRAHTAAHICYGAARR-CLESPEYAGLEIGEETVAI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YND 674
           D+  + P+    L  +++ +N  + ++ PV    +                +        
Sbjct: 127 DLE-TAPLDDEALIELDELINRTVWESRPVSWESVPVATVRERDDVVFDEERSETAVEKG 185

Query: 675 RVRVVSVEYEDG-----------GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           RVRVV++  E+               + A CGGTHV +T E+  + ++  SS   G+RRI
Sbjct: 186 RVRVVTIGDENDTGHGMATADAREPWNVAACGGTHVRNTREVGPVTVLGCSSPAEGVRRI 245

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           E   G +A      +     + ++ L V   +V   +E 
Sbjct: 246 EFAVGPQAIDRRTAEKRAAFAASAALDVDLEDVGDELER 284


>gi|56067669|gb|AAV70302.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067671|gb|AAV70303.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067743|gb|AAV70339.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 161

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVMRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
            NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   +
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAM 161


>gi|56067679|gb|AAV70307.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  V A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKVVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVVRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|90419363|ref|ZP_01227273.1| possible alanyl-tRNA synthetase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336300|gb|EAS50041.1| possible alanyl-tRNA synthetase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 251

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 13/232 (5%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEG-IFVHHAI 559
           V+    G+   +VF +T F+A  GGQ GDTG     DG +++I D    A+    +    
Sbjct: 26  VDTTADGRPG-LVFARTNFFAAGGGQPGDTGFVETADGRQVKIVDTVYAADKSTILMLVE 84

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +  + +   +LVL +D++ R +L   H+A HLL      +    ++  G+ +  D  R 
Sbjct: 85  DDAALPQPGETLVLHVDWKRRYKLMRMHTACHLLT----VVCPFPIT--GAAVGEDESRV 138

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYN-DRVR 677
           D    +     +   +   + +++  N PV TR ++  +  A+ G       K      R
Sbjct: 139 DFDIPEGAP--DKAEVTAGLMELVEANHPVFTRWISDAELDANPGLVKSANVKPPRGTGR 196

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           +  V   D G   +  CGGTHV  TGE+  ++I          RR     G 
Sbjct: 197 IRLVCVGDEGAVDTQPCGGTHVLETGEVGEIHIGKIEKKGKVNRRFRIRFGP 248


>gi|18976458|ref|NP_577815.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
 gi|18891997|gb|AAL80210.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
          Length = 214

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 92/227 (40%), Gaps = 31/227 (13%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E   + +  +   ++ DQT FY   GGQ  D G   G    +++ DV K  EG  V H 
Sbjct: 13  KEAKAKVLEVKDNALLLDQTIFYPTGGGQPHDRGWING----VEVLDVYKDEEG-NVWHV 67

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGL 617
           + E    +    + L +D++ R +L   HSA HLL + L  ILG  +    GS +T +  
Sbjct: 68  VKELEKFKPGDEVELKLDWEYRYKLMRIHSALHLLENVLDQILGKGNWEVVGSGMTHEKG 127

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R DV + + + + + K IE   N  + +   +                   G K      
Sbjct: 128 RLDVGYPENLNAYKEKIIE-LFNRYVDEGGEIKIWW--------------EGEK------ 166

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                Y          CGGTHV    EI  +  +  SSI  G +R+E
Sbjct: 167 ----RYTQIRDFDPIPCGGTHVKDIREIGHIKKLKRSSIGRGKQRLE 209


>gi|56067697|gb|AAV70316.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  V A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKVVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVMRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|299747575|ref|XP_001837131.2| alanyl-tRNA synthetase domain-containing protein [Coprinopsis
           cinerea okayama7#130]
 gi|298407581|gb|EAU84748.2| alanyl-tRNA synthetase domain-containing protein [Coprinopsis
           cinerea okayama7#130]
          Length = 510

 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 123/326 (37%), Gaps = 39/326 (11%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV--QKKAEGIF 554
           ++  I      G  +E+V   T  + E GGQ  DTG  + +G R ++  V   K+  G  
Sbjct: 73  KKAVIAPALPPGPILELVLHDTVIFPEGGGQPTDTGKILVEG-RDKLWSVLQAKRQGGHA 131

Query: 555 VHHAIVERG-------ILRTEMSLVLTIDYQ---NRRQLSINHSATHLLHHALSTILGSH 604
           VH+  +  G         +   ++ +T+D Q    R      H++ HLL   L T L   
Sbjct: 132 VHYVEIPGGDVDGVLQTFKPGTTVTVTLDDQDYNKRYDHMSMHTSQHLLSALLETRLNLP 191

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED------ 658
                    P     +V   + +TS E+ ++++  N ++ +   V   +   E+      
Sbjct: 192 TLSWSLTSYPAPCYVEV--PRGLTSDEILAVQNEANRLVFEGRRVHVEVDVLEESQPRPT 249

Query: 659 --AIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             A +      L   Y     R+V +E  D        C GTH+ S   + L  +    +
Sbjct: 250 DPANSRSVGKGLPDDYTGGVKRIVVIEGVD-----RNPCCGTHLPSIHNLQLFLLPHTEA 304

Query: 716 IRAGIR---RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---- 768
           +        R+  + G R   HL      L   A+ L      +  R+ ++ ++ +    
Sbjct: 305 LSRSSTTSARLYFLAGPRLIDHLAKSHGLLTQSAALLSCGAPLLPERLGQVIDDRKRADK 364

Query: 769 ---KLQLIHAKRKLQLNVEDLSCHKI 791
              +L++  A R  Q  V+ L+  K 
Sbjct: 365 RVGELEIELAGRIAQDLVQKLASEKA 390


>gi|254168839|ref|ZP_04875680.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|197622276|gb|EDY34850.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
          Length = 233

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 18/232 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     +      +  D+T FY   GGQ  DTG  I +G    +T V+++         
Sbjct: 14  KEFKARVIDRSDEGIYLDRTAFYLGGGGQPADTGKIIANGKEYVVTGVRREDA-----LH 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           ++E         +   ID++ R ++   H+A H++        G  V   G+ +     R
Sbjct: 69  LIEGEKPEIGEEVKGIIDWERRYKIMRTHTAVHVISGVAYQQFG--VVITGNQLYEGRAR 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYND 674
            D++  + ++      I +  N ++ ++LPV    +++E+             L  KY D
Sbjct: 127 LDLS-FENMSKELAMQIIEESNKVVKKDLPVRWYFISKEEFKNRPELMRVNPKLYEKY-D 184

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           ++RVV +E            GGTHV    EI  + +    S     +RI  +
Sbjct: 185 KIRVVEIEG-----FDIQADGGTHVKHLAEIGKIELQKYESKGKKNKRIYIV 231


>gi|146342087|ref|YP_001207135.1| putative alanyl-tRNA synthetase-like protein [Bradyrhizobium sp.
           ORS278]
 gi|146194893|emb|CAL78918.1| putative alanyl-tRNA synthetase related protein [Bradyrhizobium sp.
           ORS278]
          Length = 243

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 5/224 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+   A++ +   V+  ++PFY   GGQL D G    +GI   +T  +  ++G++     
Sbjct: 18  ELDTTALNVRHGAVLLSRSPFYPGGGGQLPDRGTIAWNGIVRDVTGFEPTSDGLWHQFGD 77

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++ L +D   R+++   H+  HL++ A+ T+    +         D    
Sbjct: 78  DAVPW----GTITLRVDAAFRQRMCEQHTVAHLVNSAVYTLFDGALLTGVRMTDTDEFSV 133

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    K +   +L+++ED VN  I+   PV    M  +DA A+       +    R    
Sbjct: 134 DFDLPK-VAPEQLRAVEDAVNAAISDGRPVRAFDMPYDDAQATAGLFRAKSVAPPRQADG 192

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +   D        CGGTH+ ST +   + I+   +     RR 
Sbjct: 193 MIRIVDIDGLDRQACGGTHLVSTAQARRIRILKVDNKGRQNRRF 236


>gi|56067673|gb|AAV70304.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067677|gb|AAV70306.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067681|gb|AAV70308.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067683|gb|AAV70309.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067685|gb|AAV70310.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067699|gb|AAV70317.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067701|gb|AAV70318.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067705|gb|AAV70320.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067707|gb|AAV70321.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067709|gb|AAV70322.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067711|gb|AAV70323.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067717|gb|AAV70326.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067719|gb|AAV70327.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067725|gb|AAV70330.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067727|gb|AAV70331.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067737|gb|AAV70336.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067739|gb|AAV70337.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVVRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|254469513|ref|ZP_05082918.1| alanyl-transfer RNA synthetase domain protein [Pseudovibrio sp.
           JE062]
 gi|211961348|gb|EEA96543.1| alanyl-transfer RNA synthetase domain protein [Pseudovibrio sp.
           JE062]
          Length = 241

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 21/220 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVE----RGILRT 567
           ++ D+T FY   GGQ GD+G   + DG R+ I       +   + H   E       L  
Sbjct: 28  IILDRTCFYPNGGGQPGDSGSIELEDGTRIPIATTVYSKDRTQIVHVPAEGTQLPAALSA 87

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +   +D++ R +    H+A HLL   L           G  I+    R D    +  
Sbjct: 88  GAKITAHVDWETRYKRMRVHTALHLLSVVLP------FPVTGGQISDGTGRLDFDIPEAA 141

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEY 683
              E   +   + ++IA +  V    +  E+  A+       ++     + RVR+V +  
Sbjct: 142 LDKE--ELTGKLQELIAGDYAVTQEWITDEELEANPGLVKTMSVKPPMGSGRVRLVRI-- 197

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             G       CGGTHVS T +I    I          RR+
Sbjct: 198 --GDNVDLQPCGGTHVSQTAQIGTAVITKIEKKGRQNRRV 235


>gi|56067713|gb|AAV70324.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067715|gb|AAV70325.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 146

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGI 539
            +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +  
Sbjct: 2   YVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESS 61

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++ V     G  +H  +VE G LR    +   +D   R+    NHSATH L+H+L  
Sbjct: 62  EFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLK 119

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP 626
           +LG    Q GS + P+ LRFD T+   
Sbjct: 120 VLGQDTDQRGSLVVPEKLRFDFTNKSA 146


>gi|317060667|ref|ZP_07925152.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313686343|gb|EFS23178.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 249

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 21/253 (8%)

Query: 511 VEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             V   + PFY +  GGQLGD G         +I  V +K   +           L  + 
Sbjct: 16  YRVSIQENPFYPDGKGGQLGDRGKI----GTAKILQVFEKELWL--------DSPLEEKK 63

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
                ID + +++++  H+A H+           +    G  +  D    D+ H   I  
Sbjct: 64  EYDYVIDSERQQEIAQQHTAQHIFSSLAHRYFSWNTV--GFRMAEDYSTVDLDHL-DIPF 120

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +++ +E  VN+ I Q+L +    ++ E A        + +K    VR V V   D    
Sbjct: 121 EQIRFLEQEVNNTIEQSLSLRIFSLSSEKAHQLSLRKAISSKIQGEVRFVEVPGVDL--- 177

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               CGG HV +T EI    I+   +IR    R   + G+RA      + +  KSL+   
Sbjct: 178 --CACGGFHVKNTLEIRAFKIIHRENIRGKFTRFYFLAGKRALQDYFQKHQITKSLSHRY 235

Query: 750 KVSQGNVVGRVEE 762
                 ++   E+
Sbjct: 236 SCQISEILEMQEK 248


>gi|56067721|gb|AAV70328.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGI 539
            +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +  
Sbjct: 3   YVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESS 62

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++ V     G  +H  +VE G LR    +   +D   R+    NHSATH L+H+L  
Sbjct: 63  EFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLK 120

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP 626
           +LG    Q GS + P+ LRFD T+   
Sbjct: 121 VLGQDTDQRGSLVVPEKLRFDFTNKSA 147


>gi|257463065|ref|ZP_05627467.1| alanyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 248

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 21/253 (8%)

Query: 511 VEVVFDQTPFYAEA-GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
             V   + PFY +  GGQLGD G         +I  V +K   +           L  + 
Sbjct: 15  YRVSIQENPFYPDGKGGQLGDRGKI----GTAKILQVFEKELWL--------DSPLEEKK 62

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
                ID + +++++  H+A H+           +    G  +  D    D+ H   I  
Sbjct: 63  EYDYVIDSERQQEIAQQHTAQHIFSSLAHRYFSWNTV--GFRMAEDYSTVDLDHL-DIPF 119

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +++ +E  VN+ I Q+L +    ++ E A        + +K    VR V V   D    
Sbjct: 120 EQIRFLEQEVNNTIEQSLSLRIFSLSSEKAHQLSLRKAISSKIQGEVRFVEVPGVDL--- 176

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
               CGG HV +T EI    I+   +IR    R   + G+RA      + +  KSL+   
Sbjct: 177 --CACGGFHVKNTLEIRAFKIIHRENIRGKFTRFYFLAGKRALQDYFQKHQITKSLSHRY 234

Query: 750 KVSQGNVVGRVEE 762
                 ++   E+
Sbjct: 235 SCQISEILEMQEK 247


>gi|225710766|gb|ACO11229.1| Alanyl-tRNA synthetase domain-containing protein 1-B [Caligus
           rogercresseyi]
          Length = 414

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 130/354 (36%), Gaps = 29/354 (8%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           + +EV    T  + E GGQ  DTG         ++  V +   G  VH+  +E   L  +
Sbjct: 25  EYLEVELQDTILFPEGGGQNHDTGRIDA----YRVAKVLR-DGGKAVHYVDLE-ASLELD 78

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D+  R      H+  HLL   L + LG   +        +     +++ + + 
Sbjct: 79  QPVCLLLDWNRRFDNMQQHTGQHLLSALLQSKLGLKTNSWWMAENSESEGPGISYIELLQ 138

Query: 629 S----------AELKSIEDNVNDIIAQNLPVVTRIMNR-EDAIASGAAALLGTKYNDRVR 677
                       + +SIE + N +I    PV        +  +    +  L         
Sbjct: 139 EGGKNKGSFGLTDAESIEKDANQMIRDGRPVTVSAHRVGDSELERAYSRGLPEDLPHDAL 198

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLM 736
           +  V+     +    +C GTHVS+   + ++ I      +      +  + G+R    L 
Sbjct: 199 IRIVDI----IGDRNMCCGTHVSNLSHLQMIKITQVQKTKKANEYLLYFVVGERVIRLLS 254

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-- 794
              ++   L   LK    +    VE+     +  + I++    +L V  L  HKI     
Sbjct: 255 SCLDRETKLTGLLKNRPLDHCSLVEKALSTSKNAKKINSNLLKELAV--LEAHKILRSTP 312

Query: 795 --NFMSHIISEVDSKELKSVMDALQKKIQ-SGIIMLVGISKEKKASVLIVVTED 845
              F+ +   + +S+ + + +  L  K +    I L+  S E  +S  + ++ D
Sbjct: 313 IPKFICNHRKDGNSEFVGTFIKELTGKEEFKVFIFLIVGSGEGGSSYQMTLSGD 366


>gi|56067665|gb|AAV70300.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067667|gb|AAV70301.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067675|gb|AAV70305.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067687|gb|AAV70311.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067703|gb|AAV70319.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067729|gb|AAV70332.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067731|gb|AAV70333.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 160

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVMRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            NHSATH L+H+L  +LG    Q GS + P+ LRFD T+   
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSA 160


>gi|163746383|ref|ZP_02153741.1| hypothetical protein OIHEL45_13300 [Oceanibulbus indolifex HEL-45]
 gi|161380268|gb|EDQ04679.1| hypothetical protein OIHEL45_13300 [Oceanibulbus indolifex HEL-45]
          Length = 240

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 14/220 (6%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI-TDVQKKAEGIFVHHAIVERGILRTE 568
           +  V+ + + FY   GGQ GD+G    D   L I T V+ +  G         R +    
Sbjct: 25  EGGVILENSLFYPTGGGQPGDSGWLTWDRQELSIATTVRDRDSGRIALVPAEPRALPPVG 84

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +   +D+  R +    H+A HLL   +           G  I+    R D     P  
Sbjct: 85  AYVTQELDWDRRHKHMRVHTALHLLSVVIP------YPVTGGQISASHGRLDFNM--PDA 136

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYE 684
             +   +E+ +N  ++ +  V    +   +  A+       ++   +    +R++ +  E
Sbjct: 137 PQDRGELEEALNYFVSLDARVSEDWITEAELDAAPELVKTMSVAPPRGRGDIRLIRIG-E 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                    CGGTHV+ TGEI  L +          RRI 
Sbjct: 196 PQEPIDLQPCGGTHVARTGEIGALRLGKIEKKGRLNRRIY 235


>gi|26346899|dbj|BAC37098.1| unnamed protein product [Mus musculus]
          Length = 228

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 21/212 (9%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG    VV + T  + E GGQ  D G    D   L++T    +A+           
Sbjct: 35  KEVLSG--FHVVLEDTLLFPEGGGQPDDRGTI-NDISVLRVTRRGAQAD-------HFTE 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L     + + +D++ R      HS  HL+      + G   +          LR  + 
Sbjct: 85  SPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSW----ELGRLRSVIE 140

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVS 680
              P +T+ ++ +IE +VN  I   LPV  R ++ +D          L   +   +RVV+
Sbjct: 141 LDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVT 200

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +E  D     S +C GTHVS+  ++ ++ I+ 
Sbjct: 201 IEGVD-----SNMCCGTHVSNLSDLQVIKILG 227


>gi|305663927|ref|YP_003860215.1| Ala-tRNA(Pro) hydrolase [Ignisphaera aggregans DSM 17230]
 gi|304378496|gb|ADM28335.1| Ala-tRNA(Pro) hydrolase [Ignisphaera aggregans DSM 17230]
          Length = 239

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 12/230 (5%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHA 558
           E   + V   +  +V ++T FY + GG   DTG  +    + ++  V+  K  G  VH  
Sbjct: 14  EFNAKVVKINQNIIVLNRTAFYPKTGGLESDTGYIVKGDKKYRVVQVRIDKESGDVVHEL 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 ++    ++  +D+  R +L   H+A H+L   +     + ++  G  I P+   
Sbjct: 74  ESSPIDIKEGDEVMGILDWDRRYRLMRLHTAAHILSAIMYRDYNALIT--GGNIYPEYAY 131

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DR 675
            D +           +I    N+I+ +NL V    + R++A+       L ++     ++
Sbjct: 132 DDYSIEVFDRKIFEDAI-AKANEIVKKNLEVKIYWLERDEAMKIPGIVKLASRLPPNVEK 190

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +R+V +   D         GG HV +T EI  +  +   +     +R+  
Sbjct: 191 LRIVEIPGVD-----IQADGGPHVRNTQEIGEIVFIKAENKGRNRKRLYY 235


>gi|56067723|gb|AAV70329.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 147

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGI 539
            +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +  
Sbjct: 3   YVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESS 62

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              ++ V     G  +H  +VE G LR    +   +D   R+    NHSATH L+H+L  
Sbjct: 63  EFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVMRRQLTMKNHSATHALNHSLLK 120

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKP 626
           +LG    Q GS + P+ LRFD T+   
Sbjct: 121 VLGQDTDQRGSLVVPEKLRFDFTNKSA 147


>gi|168014116|ref|XP_001759601.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689140|gb|EDQ75513.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 270

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 16/231 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHA---- 558
              G+++ VV DQT  + + GGQ  DTG    +   I+  +TDV+ K+ G+  H+     
Sbjct: 39  ITEGERLAVVLDQTILHPQGGGQPFDTGSIEAVDGTIKFCVTDVRTKS-GVVYHYGNYHE 97

Query: 559 --IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
             ++E         + +++D   R   S  HSA HLL   +S I    +        PDG
Sbjct: 98  NRVMEATGFEPGHEVKISVDGARRTLNSRLHSAGHLLDACMSNIGLGSLEPGKGYHFPDG 157

Query: 617 LRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              +   + P +  E K  ++E   N +IA    V   + +  +A A     L      +
Sbjct: 158 PFVEYKGTIPSSDLENKRDALESEANHLIALGGQVRATVASYSEAAALCGGRLPDYIAKE 217

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
               +    E+ G      CGGTHV +  EI  +  VS+  +R G+ ++  
Sbjct: 218 SCPRIICLGENLG----CPCGGTHVLAISEIGEIK-VSQIRVRKGVTKVYY 263


>gi|113868616|ref|YP_727105.1| metal-dependent hydrolase [Ralstonia eutropha H16]
 gi|113527392|emb|CAJ93737.1| predicted metal-dependent hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Ralstonia eutropha H16]
          Length = 237

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 16/223 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERG 563
             +G +  +  D+T  YA +GGQ GDT    + DG  + I D     +   + H      
Sbjct: 22  VAAGAEG-IELDETVCYARSGGQAGDTATLALADGRTVAIADTIYAEDRSRILHVPAPDA 80

Query: 564 IL-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L R    + +TID+  R +L   H+  HLL   +       V   G  I+P+  R D  
Sbjct: 81  PLPRVGERVTVTIDWARRHKLMRLHTCLHLLGSLIP------VPVTGCGISPESARVDFD 134

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYN-DRVRVVS 680
             +     +   + + +N +I  +  V  T I  +E A        +G         +  
Sbjct: 135 LPESTL--DKADLTERLNALIHADTAVRTTLITPQELAAQPELVRTIGAAPPAGTASIRI 192

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +E           CGGTHV++T EI  + +          RR+
Sbjct: 193 IEIPGV---DRQPCGGTHVANTSEIGAVVVTRIEKKSRTNRRV 232


>gi|330897296|gb|EGH28715.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 170

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDL---SC 788
            L   +++LK  A+ +K ++ N++ ++  + E  R  + QL   + K      D    + 
Sbjct: 1   WLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQLEQLQAKAASAAGDDLSSAA 60

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             +  V  ++  +   D K L +++D L+ K+   +I+L G   E K  ++  VT+DL  
Sbjct: 61  LDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL-GSVHEDKVVLVAGVTKDLTG 119

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  A DL + +A  +GG GG GRP MAQ GG +    D A+A    F+++
Sbjct: 120 QLKAGDLMKQAAAAVGGKGG-GRPDMAQGGGVDAGALDSALALAVPFVEQ 168


>gi|126466032|ref|YP_001041141.1| Ala-tRNA(Pro) hydrolase [Staphylothermus marinus F1]
 gi|126014855|gb|ABN70233.1| Ala-tRNA(Pro) hydrolase [Staphylothermus marinus F1]
          Length = 239

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +VFD T F+  +GG   DTG  + D    ++  V        V H +     L+    + 
Sbjct: 28  IVFDTTIFHPRSGGVDHDTGKLVKDNKEYRVVQVLFDKNIGDVVHIVDGEHDLKAGDVVK 87

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R +L   H+A H+L   +    G+ ++  G  I+ +    D +  +       
Sbjct: 88  QVIDWNRRYKLMRLHTAAHILASVMYRDYGALIT--GGNISEEYAYDDYSL-EEFNKELF 144

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVH 689
             + +  N II +N+ V    + RE+A+       L  +     D +R+V +   D    
Sbjct: 145 LDVVEKANQIIKRNIEVKVYWLPREEALKIPGIVKLAKRMPPNIDMLRIVEIPGVD---- 200

Query: 690 SSALCGGTHVSSTGEIM---LLYIVSESSIRA 718
                GG HV +TGEI     L IV++   R 
Sbjct: 201 -IQADGGPHVKNTGEIGEIVPLKIVNKGRKRK 231


>gi|284172923|ref|YP_003406304.1| threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
 gi|284017683|gb|ADB63631.1| Threonyl/alanyl tRNA synthetase SAD [Haloterrigena turkmenica DSM
           5511]
          Length = 239

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 85/233 (36%), Gaps = 13/233 (5%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                    +  +V D T FY E GGQ  D G    DG    I DV+K    +  +   +
Sbjct: 16  FQATVTEATQEYLVLDGTYFYPEGGGQPADRGQLSWDGGSATIRDVRKNHGDVRHYVEAI 75

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E  +  +   +   ID Q R +L   H+A H++   +  +  +    N   +    + F+
Sbjct: 76  EGTVPDSGTCITGEIDAQRRERLRRMHTAQHVVSKVVLDMFDAATVGNQVHVDRSHIDFE 135

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE--DAIASGAAALLG--TKYNDRV 676
                     ++ +IE   N I+  +  V      R   +A                D +
Sbjct: 136 PADFDAT---DVATIERESNRIVDADFQVTKAERQRTEVEAETPEGRTQFDQIPDSVDPL 192

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
           RVV +            CGGTHV  TG I  +YI   SS    +  IE   G+
Sbjct: 193 RVVEI-----DTFDLCPCGGTHVDHTGAIGPIYITDRSSKGD-VESIEFELGE 239


>gi|217072496|gb|ACJ84608.1| unknown [Medicago truncatula]
          Length = 258

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 16/227 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ-ITDVQKKAEGIFVHHAIVE---- 561
              +  ++ D+T FY + GGQ  DTG  I     ++ +    +  +GI +H+ + E    
Sbjct: 32  DDGRHVLILDRTIFYPQGGGQPADTGFLIIHDSNIKFVVHDVRSKDGIVLHYGVFEGMGG 91

Query: 562 --RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
              G L     + L++D   R+     HSA HLL   L  I   H+    +    DG   
Sbjct: 92  EFEGTLEKGKEVSLSVDEDRRKLNFRLHSAGHLLDICLPKIGLGHLEPGKAYHFSDGPWV 151

Query: 620 DVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RV 676
           +     P    +   K +E   N +I+    V   I+  ++A       L      +   
Sbjct: 152 EYKGVVPQNEMQNKQKELEIEANALISMGGKVSADILLYDEAAKLCGGILPDYVPKESTP 211

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R+V +    G       CGGTHV    +I  +  VS+   + G+ ++
Sbjct: 212 RIVQIGDNPG-----CPCGGTHVLDVSDITKIK-VSQIRSKKGMTKV 252


>gi|193084147|gb|ACF09813.1| putative metal-dependent hydrolase related to alanyl-tRNA
           synthetase [uncultured marine group III euryarchaeote
           SAT1000-53-B3]
          Length = 244

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 20/236 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           + E   +  +     V  ++T FY   GGQ  D G    +     + DV+KK     +  
Sbjct: 15  KKEFQSKVTAVYPGIVELEETAFYHLGGGQPSDKGTLNWEDGESIVYDVRKKNRIRHM-- 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             VE  +     S+   +++  R      H++ HL+   +S + G+     G+ I  D  
Sbjct: 73  --VEGDLPEVGDSVNGKLNWDRRYTHMRMHTSQHLVSAIVSDLYGADTV--GNQIGFDKS 128

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLG 669
           R D    K ++  E+  + D  ND + +++ V     NR D   +             L 
Sbjct: 129 RIDFKPLK-LSMNEIDDLIDRTNDYVTKDISVNISEANRSDLEGNPEIRSSMSSGLWKLL 187

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            K   R+RV+S++  D        C GTHV S  EI  +  V   +  AG +R+  
Sbjct: 188 PKSVTRLRVISIDEID-----VCPCAGTHVRSLKEIGKVEFVKRDNKGAGKQRLTY 238


>gi|119719938|ref|YP_920433.1| threonyl/alanyl tRNA synthetase, SAD [Thermofilum pendens Hrk 5]
 gi|119525058|gb|ABL78430.1| Ala-tRNA(Pro) hydrolase [Thermofilum pendens Hrk 5]
          Length = 240

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 11/234 (4%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAE-AGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
            +++ + V   VSG K  V  DQT F+   +GG   D G  +      ++  VQ   EG 
Sbjct: 11  YLKEFDAVVTRVSGNK--VFLDQTAFHPGPSGGLDTDKGWLVLPTGD-RVEVVQALEEGG 67

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V H +     L+    +   ID++ R ++   H+A+H+L   L    G+ V+  G  I 
Sbjct: 68  DVAHVLARAVNLKPGDRVRGVIDWERRYRMMKLHTASHVLAAVLYKKYGALVT--GGHIQ 125

Query: 614 PDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTK 671
           P+  + D   S      A  +   +  N II   L V    ++R++A+   G   L G  
Sbjct: 126 PEEAKDDFDLSGVEDWKAAFQQAVEETNRIIGGCLEVKVYWLSRDEALKIPGIVKLAGRL 185

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             +  ++  VE     V      GG HV +T EI  + +    S  A  +RI  
Sbjct: 186 PPEVEKLRIVEIPGVDV---QADGGPHVKNTCEIGGIVLKKLESKGAKRKRIYY 236


>gi|15920346|ref|NP_376015.1| alanyl-tRNA synthetase [Sulfolobus tokodaii str. 7]
 gi|15621128|dbj|BAB65124.1| 207aa long hypothetical alanyl-tRNA synthetase [Sulfolobus tokodaii
           str. 7]
          Length = 207

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 16/216 (7%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +  D+T FY   GG   D G  I +G ++++ +V K+ +G   H         +    + 
Sbjct: 1   MFLDKTAFYPGGGGVENDKGYFIFNGNKIEVNNV-KEIDGEIAH--EATSVPFKEGDEIT 57

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID++ R ++   H+A+H++     +   S ++  G  I+P+  + D           L
Sbjct: 58  GVIDWERRYRMMRLHTASHIIAAIAYSKYNSKIT--GGNISPEYAKDDFDIDDKNK---L 112

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVH 689
             I    N+I  + +PV    + +E+A+       L  +     D  R+V +E  D    
Sbjct: 113 LEIVKEANEIAKKGIPVKIYFLKKEEALKIPGIVKLAERMPPNIDIWRIVEIEGID---- 168

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                GG HVS+T EI  +  +   +   G +RI  
Sbjct: 169 -IQADGGPHVSNTLEIGEIVPLKIENRGKGKKRIYY 203


>gi|313898114|ref|ZP_07831653.1| threonine/alanine tRNA ligase second additional domain protein
           [Clostridium sp. HGF2]
 gi|312957142|gb|EFR38771.1| threonine/alanine tRNA ligase second additional domain protein
           [Clostridium sp. HGF2]
          Length = 385

 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 133/382 (34%), Gaps = 31/382 (8%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++E              T FY E GG   D G          + D  K  EG   H   
Sbjct: 17  KVLEVREDNGLFWHACKDTIFYKEGGGMASDIGMI----DEHMVLD-LKYEEGHMWHLLD 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R E ++ ++++   R +    H+A HL+   L  +       +      + + F
Sbjct: 72  T-----RLEGTVFMSVNLHERFRKCQIHTAQHLISAVLGNVYKVETLAHHVGDEENDIEF 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
                    + EL+      N +I  +L V  +   R +A        L     D +RVV
Sbjct: 127 SFEDFTDKMAFELQ---VLCNGLIRDDLEVSIQYPTRVEASKMAKGKNLD---RDDLRVV 180

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +     G     +CG  HV S   + +LYI        G  +I+ + G +    +  + 
Sbjct: 181 RI-----GALDYNMCGCMHVPSLRYLQMLYISGYEKTAKGY-KIKYLVGDQLLDCVSRRY 234

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFM 797
           + L   +  L VS   V   V  +  E R+L       K+K              D+  +
Sbjct: 235 KVLDEASRSLAVSHLYVNTGVNRLINETRQLNRDIVVWKQKYYEMFGKELGQSEEDI--I 292

Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR 857
            H   ++D K    V   + +  +  +I +          V++   +D+   F++  + +
Sbjct: 293 IHFFDDIDVKSEADVAKYVTENYKKAVIFVAKTYDN--VHVVVASHKDM--DFDSAKVFK 348

Query: 858 LSAKVLGGGGGGGRPHMAQSGG 879
             A       GGG   ++Q GG
Sbjct: 349 EIADAYHL-KGGGSARLSQGGG 369


>gi|254168752|ref|ZP_04875594.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289596811|ref|YP_003483507.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
 gi|197622378|gb|EDY34951.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289534598|gb|ADD08945.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
          Length = 233

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 92/232 (39%), Gaps = 18/232 (7%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
            E     +      +  D+T FY   GGQ  DTG  I +G    +T V+++         
Sbjct: 14  KEFKARVIDRSDEGIYLDRTAFYLGGGGQPADTGKIIANGKEYVVTGVRREDA-----LH 68

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           ++E         +   I+++ R ++   H+A H++        G  V   G+ +     R
Sbjct: 69  LIEGEKPEIGEEVKGIINWERRYKIMRTHTAVHVISGVAYQQFG--VVITGNQLYEGRAR 126

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYND 674
            D++  + ++      I +  N ++ ++LPV    +++E+             L  KY D
Sbjct: 127 LDLS-FENMSKELAMQIIEESNKVVKKDLPVRWYFISKEEFKNRPELMRVNPKLYEKY-D 184

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           ++RVV +E            GGTHV    EI  + +    S     +RI  +
Sbjct: 185 KIRVVEIEG-----FDIQADGGTHVKHLAEIGKIELQKYESKGKKNKRIYIV 231


>gi|300711786|ref|YP_003737600.1| Alanyl-tRNA synthetase, class IIc-like protein [Halalkalicoccus
           jeotgali B3]
 gi|299125469|gb|ADJ15808.1| Alanyl-tRNA synthetase, class IIc-like protein [Halalkalicoccus
           jeotgali B3]
          Length = 255

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 25/245 (10%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +  +      G    VV D T FY E GGQ  D G   G      + DV+K  E   ++H
Sbjct: 16  EARVERVIDDGDAARVVLDATHFYPEGGGQPADRGALSG-SENWPVRDVRKTDE---IYH 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +   G       +V  ID ++R      H+A HLL   L     +  +  G+ +  D  
Sbjct: 72  TVEGEGP-TVGERVVGEIDREHRAAHMQYHTAQHLLSAVLLEEYDAPTT--GNQLYADHA 128

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKY 672
           R D  + +  T  +L ++E  +N+++   + V    + RE A            LL    
Sbjct: 129 RLDCAY-ERFTDEDLDALETRMNELVGAAMDVRWYTLGRERAQTELDPERTRLDLLPESI 187

Query: 673 NDRVRVVSVEYEDGG-----------VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            + +R+V +    G            V     C GTHVS+T EI  + +    +  +   
Sbjct: 188 TE-IRIVEIGDGIGSTPNGEPSGPSTVFDRVACAGTHVSNTAEIGRVEVTGRRTQGSDEE 246

Query: 722 RIEAI 726
           R+E +
Sbjct: 247 RVEFV 251


>gi|47504|emb|CAA41766.1| alaS [Sulfolobus solfataricus]
          Length = 182

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 11/125 (8%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH ++P   ++      L  T + +V F+   T G  KP    +
Sbjct: 62  TVRESREKFLRFFEKRGHTIVPPKPVVAKWRDDLYLTIASIVDFQPFVTSGLAKPPANPL 121

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDLLT 115
              Q C+R      D+DNVG T  RH T FEM  + +F       Y+K+  +  A +  T
Sbjct: 122 VVSQPCIRL----EDVDNVGITFGRHLTTFEMAAHHAFNYPDKQIYWKDETVAFAKEFFT 177

Query: 116 KEFDL 120
           +E  +
Sbjct: 178 EELGI 182


>gi|154334542|ref|XP_001563518.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060539|emb|CAM42087.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 495

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 143/427 (33%), Gaps = 82/427 (19%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQ------------ITDVQKKAEGIFV 555
            +V+   +  + E GGQ  D G      GD  +              IT+V++ A+   +
Sbjct: 56  YDVILSDSILFPEGGGQPCDFGTLRVVPGDENKADSTCSATTAPLLSITNVRRVADACVL 115

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH----------- 604
                    L    ++   +D+  R     +H+  HLL   +  +   H           
Sbjct: 116 ----TSPASLPVGTTVHQIVDWPRRIDHMQHHTGQHLLTAVVERMDTLHLPTVSWSLTHP 171

Query: 605 -----VSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
                V        P       +T  K I+   +  IE   ND I  + PV   +    +
Sbjct: 172 YCFIQVDVGAYASDPASPYHAYITKEKKISDDMVAKIEALCNDAIIHSTPVQCDVFESLE 231

Query: 659 A-------------------IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
                                    +  +       +R++S+     G   S  C GTH+
Sbjct: 232 VYQQEQDRRHQAAAASTGRGEEVFRSRGIPEDVTGPIRIISL-----GAIDSCTCCGTHL 286

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVG 758
            +  E+  +Y++ +  ++  + ++  ITG+RA        ++ + L   L  S     V 
Sbjct: 287 HTLAELQAMYLLHQE-VKGTMVKLYFITGERAARQFHTMYQRERQLMPELSGSRPSEFVS 345

Query: 759 RVEE-------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
            V+        + +  ++  L  A  + Q     +S      V  +     +V+ +    
Sbjct: 346 VVQRRSKNTADLEKLVKRWTLELASAEAQRIAAAVSSRHSGTV-IVPLRRDDVELEFFSE 404

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLS 859
           V   L       ++++   + E+  +  +V T+D+  +              AV LA+ +
Sbjct: 405 VRARLDATGLRHVVLVSAWATERCTTGTLVNTKDVAGQVFITGGESPADMEKAVQLAKET 464

Query: 860 AKVLGGG 866
            K + GG
Sbjct: 465 LKGMKGG 471


>gi|327310448|ref|YP_004337345.1| Threonyl/alanyl tRNA synthetase, SAD [Thermoproteus uzoniensis
           768-20]
 gi|326946927|gb|AEA12033.1| Threonyl/alanyl tRNA synthetase, SAD [Thermoproteus uzoniensis
           768-20]
          Length = 232

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 96/233 (41%), Gaps = 11/233 (4%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
            +++ E     V G K  VV D+T F+   GG   DTG     G R ++   ++   G  
Sbjct: 7   YIKEFEATVLDVIGDK--VVLDRTAFHDGEGGVQADTGYLEAAGARYRVKAGRE---GDE 61

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           V H +  +  L+    +   +D++ R +    H+A H+L   L     + ++  G  ITP
Sbjct: 62  VVHVVEGQHSLKPGDVVKGVLDWEPRYRKMRLHTAAHMLSAVLYRKHNALIT--GGEITP 119

Query: 615 DGLRFDVTHSKPITS--AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           +  R D +    + +     +     VN++ A+ + V    + RE+A+       L  + 
Sbjct: 120 EYARDDFSIEGDMNTVRRAFEEAVAEVNELAARGIEVKVYWLPREEALKIPGITKLAERA 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
              + V+ +    G        GG HV +T EI  + I+   +     +RI  
Sbjct: 180 PPNIPVLRIVEIPG--VDVQADGGPHVRNTAEIGQVKILKIENRGRNKKRIYY 230


>gi|330470347|ref|YP_004408090.1| threonyl/alanyl tRNA synthetase SAD [Verrucosispora maris
           AB-18-032]
 gi|328813318|gb|AEB47490.1| threonyl/alanyl tRNA synthetase SAD [Verrucosispora maris
           AB-18-032]
          Length = 245

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 10/213 (4%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V D++ FY   GGQ  D G  +  G++ ++   +K  +            +  T  ++ 
Sbjct: 35  IVLDRSAFYPGGGGQPPDHGVLLWQGVQTRVVGTRKADD--LWLIPAEGDPLPPTGTTVT 92

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ++   R +L   HS  H+L   +    G+ V+  G  + P   R D    + + S   
Sbjct: 93  GAVEDDRRTRLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDFNLPE-VPSDFK 149

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSVEYEDGGVHS 690
             IE+ VN  +A +  V TR++ R +A+A              D   V  V+     V  
Sbjct: 150 SRIEELVNAEVAADRAVATRVLPRVEALALPDIIRTQSNLIPPDEAEVRIVDIVGLDV-- 207

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               GGTHV+ST +I  + +V   S     RR+
Sbjct: 208 -QADGGTHVASTAQIGKVRVVKVESKGRANRRV 239


>gi|88800056|ref|ZP_01115626.1| predicted metal-dependent Hydrolase [Reinekea sp. MED297]
 gi|88777182|gb|EAR08387.1| predicted metal-dependent Hydrolase [Reinekea sp. MED297]
          Length = 241

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 21/219 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI---LRTEM 569
           V+ D T FYA +GGQ GDTG    DG+ +++ D +  A+   + H +         +T  
Sbjct: 29  VILDSTIFYALSGGQPGDTGELSADGLTVRVVDTRYDADRKTILHYLDPESPVPEWKTGQ 88

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALS-TILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            + + ID+  R +L   H+A HLL   +   + G  V +  S +  D    D        
Sbjct: 89  IIEMKIDWARRHRLMRMHTAMHLLCSLIPYPVTGGGVGERESRVEFDMDTADFD------ 142

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDA----IASGAAALLGTKYNDRVRVVSVEYE 684
            A+L      +N ++ QNL V    +  +            ++   +    VR++++   
Sbjct: 143 KADLSQ---KLNQLVTQNLSVDVSSITDDMLDNNPELIRTMSVQPPRGQGSVRMINI--- 196

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            G       CGGTHV  TGEI  L +    S     +R+
Sbjct: 197 -GQGIDYQPCGGTHVRETGEIGELVVTKIKSKGKQNKRV 234


>gi|293607159|ref|ZP_06689501.1| threonyl and alanyl tRNA synthetase domain protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292814493|gb|EFF73632.1| threonyl and alanyl tRNA synthetase domain protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 239

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 21/219 (9%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVE---RGILRTE 568
           +  D+T  YA +GGQ  D+G   + DG  + + D     +   + H +            
Sbjct: 29  IELDETICYARSGGQASDSGTLTLPDGRVVALADTVYADDRQRILHVLALAEGEASPAVG 88

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + + ID+  R +L   H+  HLL   +           G  I+PD  R D    +   
Sbjct: 89  DRVTVAIDWPRRHRLMRLHTCLHLLGALVP------APVTGCSISPDSARIDFDLPESTL 142

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDRVRVVSVEYE 684
             E   + + +N +I + L V    +  E+  A                 ++R+V V   
Sbjct: 143 --EKGELTERLNALINRGLDVTVTGITPEELAAQPDLVRTVGAAPPTGTAKIRIVDVPGV 200

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           D        CGGTHV +T EI  + I          RR+
Sbjct: 201 D-----RQPCGGTHVRNTSEIGAVTIAKIEKKSRTNRRV 234


>gi|256390992|ref|YP_003112556.1| threonyl/alanyl tRNA synthetase SAD [Catenulispora acidiphila DSM
           44928]
 gi|256357218|gb|ACU70715.1| Threonyl/alanyl tRNA synthetase SAD [Catenulispora acidiphila DSM
           44928]
          Length = 244

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 14/228 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +      +V D++ FY   GGQ  D G  +  G+R +I  V+K  + + + H  
Sbjct: 21  EWDASVLKSDGEGIVLDRSAFYPGGGGQPPDEGVLVWGGVRTRIVGVRKGDDLVLIPH-- 78

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E  +     ++   +D + R  L   HS  HLL   +     + V+  G  + P   R 
Sbjct: 79  DEDPLPPAGTAVRGALDDERRTWLMRTHSGLHLLSGVVFRDFNALVT--GGNMEPGTARM 136

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDR 675
           D    + + +     IE+  N  + ++  +  +++ RE+A A          L     + 
Sbjct: 137 DFNLPE-VPADFKARIEEACNVEVVKDHRIDVKVLPREEAFAIPDIIRTATNLVPPELEE 195

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           VR+V +   D     +   GGTHV ST  I  + ++   +   G RR+
Sbjct: 196 VRIVDIVGLD-----TQADGGTHVESTRWIGKIEVLKVENKGKGFRRL 238


>gi|311108327|ref|YP_003981180.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Achromobacter xylosoxidans
           A8]
 gi|310763016|gb|ADP18465.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Achromobacter xylosoxidans A8]
          Length = 236

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 18/216 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           V  D+T  YA +GGQ GD+G   + DG  L +TD     +   + H +      +    +
Sbjct: 29  VELDETVCYARSGGQAGDSGTLTLADGRALALTDTVYADDRQRILHVLEGGMTPQVGDRV 88

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ID+  R +L   H+  HLL   +           G  I+PD  R D    +     +
Sbjct: 89  SVAIDWPRRHRLMRLHTCLHLLGALVP------APVTGCSISPDSARVDFDLPESTL--D 140

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYN---DRVRVVSVEYEDGG 687
              + + +N +I     V    +  E  A        +G         +R+V +   D  
Sbjct: 141 KADLTERLNALIEARTGVSINCITPEQLAAEPDLVRTVGAAPPAGTASIRIVEIPGVD-- 198

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 CGGTHV++TGEI  + +          RR+
Sbjct: 199 ---RQPCGGTHVANTGEIGAVIVTKIEKKSRTNRRV 231


>gi|282164324|ref|YP_003356709.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
 gi|282156638|dbj|BAI61726.1| alanyl-tRNA synthetase-related protein [Methanocella paludicola
           SANAE]
          Length = 215

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 29/226 (12%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   +  S   V V+ + T F+   GGQ GD+G   G    +++ D      G  VH  +
Sbjct: 14  EFKSKVASVDGVNVILEDTYFFPRGGGQTGDSGTIGG----VKVVDTV-AGNGRIVHI-M 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS-CITPDGLR 618
                 +    +   ID++ R +    HSA+H++++ +  + G   +   S  +  +  R
Sbjct: 68  ESAPSFKAGDMVECAIDWEKRYRKMRLHSASHIVYYLMKEVFGDACTIASSGLLDENKER 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
            D     P+  A+LK +ED  N +IA+   + T     +  +     A            
Sbjct: 128 SDYLFEAPLDKAKLKEVEDRANALIAEGWDIKTYRDPVDSGVLRWEMAPWKMD------- 180

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                          C GTH  ++ EI  + I        G  RIE
Sbjct: 181 ---------------CCGTHPKNSKEIGHITISRGKKPGKGRERIE 211


>gi|293402007|ref|ZP_06646147.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304665|gb|EFE45914.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 399

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 143/390 (36%), Gaps = 43/390 (11%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             ++++              T FY E+GG   D G               KK +G   H 
Sbjct: 28  NTKVLKVEEENGLYWHACKDTIFYVESGGMASDIGMMDNHM-----VLGLKKKDGYVWHL 82

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             V     + E ++ ++I+   R +    H+A HL+   LS +   H   +      + +
Sbjct: 83  LDV-----KLEGAVFMSINLHERFRKCQIHTAQHLISAVLSNVYKVHTLAHHVGDEENDV 137

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            FD        + EL+      N +I  +L V      R +A+A            D +R
Sbjct: 138 EFDFPDFNEKMAIELQ---VLCNGLIRDDLNVSILYPTRAEALAH---LPQKDVMRDDLR 191

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +V +     G     LCG  HV S   + LL+I        G  +I+ + G +    +  
Sbjct: 192 IVRI-----GALDYTLCGCMHVPSLRYLQLLFIRGFEKTNKGY-KIKYLVGDQLLDCVER 245

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK-LQLNVEDLSCHKIADV 794
           + + L  ++  L +S   +   V  I  E RKL  ++   K+K  ++  ++L   +    
Sbjct: 246 RYKVLDEVSHSLAISHLYLDTGVGRIINETRKLHNEVSDWKQKYYKMLAKELGQREEQ-- 303

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +     ++D+K L  +   L    Q  +I L+G   +    V+     + LD      
Sbjct: 304 -LIIEQFEDIDNKSLVKMASFLCDTYQKAVI-LIGKMYDNAHIVVAANPGNGLD------ 355

Query: 855 LARLSAKVLGG-----GGGGGRPHMAQSGG 879
             +   ++L       G  G    +AQ GG
Sbjct: 356 -VKAVYEMLADTYHLKGNVG--SSIAQGGG 382


>gi|330833973|ref|YP_004408701.1| Ala-tRNA(Pro) hydrolase [Metallosphaera cuprina Ar-4]
 gi|329566112|gb|AEB94217.1| Ala-tRNA(Pro) hydrolase [Metallosphaera cuprina Ar-4]
          Length = 237

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVH 556
            +IV+    G    VV D+T F+ + GG   D G  I    G    +T+ +K+ E I   
Sbjct: 18  AKIVKVVDKG----VVLDRTAFHPKGGGLESDNGILISKSTGKEFVVTETKKEGENIV-- 71

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           H +     +     +V  I++  R ++   H+A+H++     +  GS+++  G  ITP+ 
Sbjct: 72  HFLENPIQIEEGEVVVGRINWDRRYRMMRLHTASHIISSIAFSKYGSYIT--GGNITPEY 129

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            + D         + L  I    N+I      V    ++RE+A+       L  K    V
Sbjct: 130 AKDDFDIE---DKSLLVDIVKEANEIARSGRNVKVFFLSREEALKIPGIVKLAEKMPPEV 186

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +  +   +G        GG HV++T EI  + I+   +     +R+  
Sbjct: 187 NIWRIVEIEG--IDIQADGGPHVNNTSEIGDIEILKVENRGKSKKRLYY 233


>gi|145361275|ref|NP_683570.3| ATP binding / alanine-tRNA ligase/ nucleic acid binding /
           nucleotide binding [Arabidopsis thaliana]
          Length = 253

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 25/227 (11%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           ++ ++ + T F+ + GGQ  DTG  +  G  ++  + DV+ K +GI +H+ + E     +
Sbjct: 33  RIALILESTVFHPQGGGQPSDTGLIVFSGSDLKFSVQDVRSK-DGIVLHYGVFEGSNPES 91

Query: 568 EM------SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            +       + LT+D   R+  S  HSA HLL   +  +   H+        PDG   + 
Sbjct: 92  GIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLDMCMQKVGLGHLEPGKGYHFPDGPFVEY 151

Query: 622 THSKPITSAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRV 676
             S P    ++  K +E   N++I++   V   I+  E+A      +L    Y       
Sbjct: 152 KGSVPQEEFQVKQKELEAEANELISKGGKVYAAILPYEEASVLCGGSL--PDYISKGSTP 209

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R++ +    G       CGGTHVS+  +I+ + +      + G+ ++
Sbjct: 210 RIIKLGDSPG-----CPCGGTHVSNLSDIISMKM----RTKKGMTKV 247


>gi|15615496|ref|NP_243800.1| hypothetical protein BH2934 [Bacillus halodurans C-125]
 gi|10175556|dbj|BAB06653.1| BH2934 [Bacillus halodurans C-125]
          Length = 242

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 9/218 (4%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            K +V+ ++T F+   GGQ  D G    +G   ++ +V+K+ E I  +    +       
Sbjct: 23  NKDKVILEETIFHPNGGGQPNDEGWLYQNGKAYKVINVRKEGEEIIHYLEDADDLEEDE- 81

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + + I++  R      H+  HL+   L    G+     G+ I  +  R D+       
Sbjct: 82  --VRMKINWSRRYNFMKYHTLLHLVAGHLYHEYGALA--IGNQIFENRARLDIDFRGGEL 137

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +   +E+ +N +I +   +  R + R+ ++I+     ++         +  V  E+  
Sbjct: 138 DVDFHRVEEELNRLINEGRKMNIRNVERDSESISEKIRTVINLIPASVKNIRLVAIENM- 196

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                 C GTHV++  EI    I    S   G RR+E 
Sbjct: 197 --DEQPCSGTHVNNINEIGPFKISGNKSKGKGKRRLEF 232


>gi|291459972|ref|ZP_06599362.1| putative alanyl-tRNA synthetase [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291417313|gb|EFE91032.1| putative alanyl-tRNA synthetase [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 460

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 131/312 (41%), Gaps = 25/312 (8%)

Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF--- 520
            G + MK D  +  ++PPI         ++A  +Q + +     G+++  ++    F   
Sbjct: 22  EGREEMKRDA-LYYERPPIGDFTAELLELRASTEQEKRLVSQRLGRELSSLYTAKLFPEG 80

Query: 521 -YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
            Y E GGQ  D G         ++    ++ +G  +H+   E        +    +D   
Sbjct: 81  FYPEGGGQSADRGKV----GEAELLYALEE-KGEVLHYLDRELMP----GTYPCRLDLDF 131

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           RR+ + +HS  H++   +    G H    G  +  DGL   +     IT  EL+ +E   
Sbjct: 132 RRRNTQSHSGEHIVSGIVHRRFGYH--NVGFHMGKDGL-LTIDFDGRITEEELRELEKLS 188

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           N  + +N PV     +RE+       +    + ++ VR+V +E  D        C GT V
Sbjct: 189 NLAVWENHPVRILYPDREELSRLDYRS--KKELSETVRLVEIEGVDL-----CACCGTQV 241

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             +GEI L+ + S +S R G  RIE   G+ A S L+ ++E LK  A  L      +   
Sbjct: 242 EQSGEIGLIRLYSVTSRREGC-RIEMRAGESALSDLIRKEEVLKRCAVSLSAKPLELEDA 300

Query: 760 VEEIWEEYRKLQ 771
           ++   +E  + +
Sbjct: 301 LKRKQKEIFRKE 312


>gi|326518808|dbj|BAJ92565.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 305

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 122/299 (40%), Gaps = 42/299 (14%)

Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDG 686
           VN  I   L V  + +   DA   +G  A+ G  Y D VRVVS+           E ++ 
Sbjct: 1   VNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLANPESKEW 60

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKLK 743
              S+ LCGGTH+S+T +     ++SE  I  G+RRI A+T +   +A       D  + 
Sbjct: 61  LSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECASQAMKLASSIDTDIN 120

Query: 744 SLASFLKVSQG---------------------NVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
             +     +                       ++ G + ++ ++ RK +    +  +Q  
Sbjct: 121 EASKLDGATLEKKIGSIKNTLDAAAIPAARKADLRGNISKLEDQLRKAKKKMGEENIQKA 180

Query: 783 VEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-EKKA 836
           V+ +     A ++      ++H+   +D+  ++  +     + +S  IM+    +   KA
Sbjct: 181 VKTVIDAAEATLSEGKPFCVAHVDVGLDTTAVREAVVKAMNRFKSLPIMVFSTDEASNKA 240

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
            +   V  D  + F  +D    S   L G GGGG+  +AQ  G + ++  +A+      
Sbjct: 241 VIYAGVPPDAPNGFKVLDWLTPSIAPLKGRGGGGKNGLAQGQGSDASRVKEAMELATQI 299


>gi|320528277|ref|ZP_08029439.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
 gi|320131191|gb|EFW23759.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Solobacterium moorei F0204]
          Length = 369

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 142/375 (37%), Gaps = 40/375 (10%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             + +     F +T FY E GG  GD G   G    L++ D  K  + +  H      G 
Sbjct: 16  IKTEKDGYYTFAETVFYGEKGGMPGDKGTING----LEVID-LKWEDDVLYHKV---DGT 67

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+    + + +D + R   +   SA HLL       +G ++   G     +   +   +S
Sbjct: 68  LQN--PIHMEVDKETRIINTTVQSAYHLLDGYYGK-MGLYIVAIGVTSPENQ--WYEVNS 122

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           K +    L+ ++D +ND + Q++P         +            KY +   V  V + 
Sbjct: 123 KDLDEKHLQEVQDFMNDTLLQDIPTEFTYYKGSE--------YPNPKYANHDEVRVVTF- 173

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             G   S  CG  HV++  +I    I+       G  RI           L      ++ 
Sbjct: 174 --GDIDSQPCGTPHVNNVNQIGSFIILGSEKTSRG-TRIYTTVSWATNIKLKKYYNLIQE 230

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS--HIIS 802
           L   L   + +++  ++ +    +       K++++   ++L+ +K+ D+  M    ++ 
Sbjct: 231 LRKILNAKEDDILENIQTLRNTNK-----IYKKQIEELQKELTAYKVKDILQMKANVLVD 285

Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
            VD  +L++V  AL  ++ S  I++         S++            A D+     + 
Sbjct: 286 VVDVSQLRTVSQALLNQVSSTKILITSSDDINDFSII-------SPEGKARDIYAAIEES 338

Query: 863 LGGGGGGGRPHMAQS 877
           L    GGG P +  +
Sbjct: 339 LEA-SGGGSPKIVTA 352


>gi|300692048|ref|YP_003753043.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299079108|emb|CBJ51771.1| putative Alanyl-tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 239

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 13/215 (6%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERG---ILRTE 568
           +  DQT FYA +GGQ GDTG  +  DG  + I D    A+ + + H   +     +L   
Sbjct: 28  IELDQTVFYARSGGQAGDTGTLVLPDGQTVAIADTLYSADRLSLLHVPTDPADLDLLAPG 87

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M +   ID+  R +L   H+  HLL   +       V   G  I+PD  R D    +   
Sbjct: 88  MPVSAAIDWARRYRLMRLHTCLHLLGALIP------VPVTGCGISPDAGRIDFDLPESTL 141

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E  ++   +N +I ++ PV   ++    A+A+    +            ++   +   
Sbjct: 142 DRE--TLTAQLNALIDRDTPVRIDLITP-QALAAQPELVRTAGAAPPAGAATIRIVEIEG 198

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                CGGTHV +TGEI  + +          RR+
Sbjct: 199 IDRQPCGGTHVRATGEIGRVLVTRIEKKSRQNRRV 233


>gi|167950023|ref|ZP_02537097.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 139

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + + G+I L  I+ E+ I AG+RRIEA+TGQRA   +   +E++    + LK S+ ++  
Sbjct: 1   MKAVGDIGLCKIIVETGIAAGVRRIEAVTGQRAIEWMEADEERVLRTVALLKGSRDDLEE 60

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVM 813
           +V ++ E  RKL+    + K +L          S   +A +  ++  +   DSK L+  M
Sbjct: 61  KVMQLLERNRKLEKELEQLKGKLASAAGSDLASSAEDVAGIKVLAATLEGADSKSLRETM 120

Query: 814 DALQKKIQSGIIMLVGISK 832
           D L+ K+ S +I+L  I+ 
Sbjct: 121 DQLKNKLGSAVILLAAING 139


>gi|119872544|ref|YP_930551.1| threonyl/alanyl tRNA synthetase, SAD [Pyrobaculum islandicum DSM
           4184]
 gi|119673952|gb|ABL88208.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum islandicum DSM 4184]
          Length = 238

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 15/231 (6%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +     EV+ D+T F+   GG   D+G  I    +          +G  V H +
Sbjct: 15  EFEASVLEVIGNEVILDKTAFHDGTGGLQADSGFIIYRSEKY---STVASHKGGEVVHIL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +    +   +D++ R +    H+A H+L   L     + ++  G  ITP+  R 
Sbjct: 72  DRAPAFKPGDVVTGILDWEKRYRKMRLHTAAHILSAVLYKRYNALIT--GGDITPEYARD 129

Query: 620 DVTHSK--PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---D 674
           D              +      N+I  + + V    + RE+A+       L  K      
Sbjct: 130 DFNIEGDMATVRKAFEEAVAEANEIAQRGIEVKIYWLPREEALKIPGVVKLAEKMPPDIP 189

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++R+V +   D         GG HV +T EI  + I+   +   G +R+  
Sbjct: 190 QLRIVEIPGVDL-----QADGGPHVRNTREIGTIKILKVENRGKGKKRLYY 235


>gi|315503581|ref|YP_004082468.1| threonyl/alanyl tRNA synthetase sad [Micromonospora sp. L5]
 gi|315410200|gb|ADU08317.1| Threonyl/alanyl tRNA synthetase SAD [Micromonospora sp. L5]
          Length = 245

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 14/223 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +  +  +V D++ FY   GGQ  D G  +  G++ +I   +K               +
Sbjct: 27  LAADPEQGIVLDRSAFYPGGGGQPPDHGVLLWQGVQTRIVGTRK--GDDLWLIPPEGDPV 84

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +V  ++   R  L   HS  H+L   +    G+ V+  G  + P   R D    
Sbjct: 85  PPVGTEVVGAVEDARRTMLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDFNLP 142

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDRVRVVS 680
           + +       IE+ VN  +A +  V  R++ R +A+A          L       VR+V 
Sbjct: 143 E-VPPDFKARIEELVNAEVAADRSVAVRVLPRAEALALPDIIRTQSNLIPPEEQEVRIVD 201

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   D         GGTHV+ST +I  + +V   S     RR+
Sbjct: 202 IVGLD-----VQADGGTHVASTAQIGKVQVVKVESKGRANRRV 239


>gi|126460266|ref|YP_001056544.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum calidifontis JCM 11548]
 gi|126249987|gb|ABO09078.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum calidifontis JCM 11548]
          Length = 238

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 9/228 (3%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +    VEVV D+T F+   GG   DTG  I  G   Q     K   G  V H +
Sbjct: 15  EFEATVLEVNGVEVVLDKTAFHDGTGGVQADTGVLIFGGEVYQAVAAHK---GGEVAHVL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 R    +   +D++ R +    H+A H+L   L     + ++  G  IT +  R 
Sbjct: 72  DRAPAFRPGDVVKGVLDWEKRYRKMRLHTAAHILAAVLYNKYNALIT--GGDITHEYARD 129

Query: 620 DVTHSKPI--TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           D      +       +      N I  + + V    + RE+A+       L  K    + 
Sbjct: 130 DFNIEGDMAAVRKAFEEAVAEANAIAQRGIDVKVYWLPREEALKIPGVVKLAEKMPPNIP 189

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           ++ +    G        GG HV +T EI  + I+   +   G +R+  
Sbjct: 190 ILRIVEIPG--VDIQADGGPHVRNTREIGTIKILKIENRGKGKKRLYY 235


>gi|259015947|gb|ACV89256.1| alanyl-tRNA synthetase [Strangalia bicolor]
          Length = 121

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 89  FFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEA-----FKLWKKI 143
           FFEM+ N+S G Y K      AW+ LT+   L   RLY+T +  D+ +     ++  +  
Sbjct: 1   FFEMMXNWSLGDYVKNEVCTWAWEYLTERLKLPADRLYVTYFGGDQSSGLEPDYECKQVK 60

Query: 144 SGLS--ADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIW 201
             +      +I  +  DNFW M ETGPCGPCSE+ FD+           + +    +EIW
Sbjct: 61  YQIISKPSHVIPGSMKDNFWEMGETGPCGPCSELHFDRIGG-REVPELVNNDDPDVLEIW 119

Query: 202 NL 203
           NL
Sbjct: 120 NL 121


>gi|126452703|ref|YP_001065542.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167844963|ref|ZP_02470471.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei B7210]
 gi|242315528|ref|ZP_04814544.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|126226345|gb|ABN89885.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106a]
 gi|242138767|gb|EES25169.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
          Length = 243

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIFVHHAIVER 562
             +  +  +  D+T FY   GGQ GD+G     G       D +K K +G     A+   
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAASVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        ++   
Sbjct: 134 DYVRIDFATVEPIDREH---VQARLGELVDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|254787772|ref|YP_003075201.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
 gi|237685363|gb|ACR12627.1| alanine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 242

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 20/229 (8%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEG--IFVHHAI 559
              ++ ++   +FD+T FY   GGQ GDTG     DG    +T+  +  E          
Sbjct: 23  ASLLAIKENFALFDKTIFYPLGGGQPGDTGTLEFPDGTSRNVTNTYRDREQTQQIWLELD 82

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                    +S + T+++  R +    H+  HLL   +           G  I+ D  R 
Sbjct: 83  TPLSEEHIGLSALQTLNWDRRYRHMQFHTCLHLLCALV------DAPVTGCNISEDKARL 136

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDR 675
           D    +P  + E   I + +N +I +   V    +  E+  ++     +A +    YN R
Sbjct: 137 DFDLPEPSVTKE--GITEELNALIQKAAAVTPASITPEELASNTDLIKSADVAPPAYNGR 194

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +R+V +E  D     +  CGGTHV +T EI  +       +    RRIE
Sbjct: 195 IRLVKIEGID-----TQPCGGTHVKTTSEINTVVCTKIKKVSKSNRRIE 238


>gi|254181219|ref|ZP_04887816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|184211757|gb|EDU08800.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
          Length = 243

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIFVHHAIVER 562
             +  +  +  D+T FY   GGQ GD+G     G       D +K K +G     A+   
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        ++   
Sbjct: 134 DYVRIDFATVEPIDREH---VQARLAELVDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|126731388|ref|ZP_01747195.1| Alanyl-transfer RNA synthetase domain protein [Sagittula stellata
           E-37]
 gi|126708299|gb|EBA07358.1| Alanyl-transfer RNA synthetase domain protein [Sagittula stellata
           E-37]
          Length = 238

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 16/229 (6%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558
           G +V +   G    VV +   FY + GGQ GD+G    DG  L I    +   G  +   
Sbjct: 17  GVVVAQTPEG---GVVVEPALFYPKGGGQPGDSGWLEWDGRSLAIATTVRGEGGSSILVP 73

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                +      +V  +D++ R +    H+A HLL   +       +   G  I     R
Sbjct: 74  AEPAPLPPLGAHVVQILDWELRHKYMRVHTALHLLSVVIP------LPVTGGQIGAGTGR 127

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYND 674
            D    +P   ++   IE  +  ++ ++L V    ++ ++  A        ++   +   
Sbjct: 128 LDFLMPEP--PSDRDGIEQALVHLVDRDLEVTDGWISEDELDARPELVKTMSVQPPRGAG 185

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           R+R+V +      V     CGGTHV+ TGEI  + +    +     RR+
Sbjct: 186 RIRLVRIGTGTEQVD-LQPCGGTHVARTGEIGAVKLGKIENKGKQNRRV 233


>gi|257076519|ref|ZP_05570880.1| alanyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 238

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 4/227 (1%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +S +   VV D+T FY  +GGQ  DTG        ++I DV  + +G   H A 
Sbjct: 14  EFDASVISVKDNYVVLDKTLFYPTSGGQPNDTGILKTSNGEMKIIDV-IQEDGEIRHIAD 72

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   +    ++   ID+  R      H+A H++   ++    + +   G  I  D  R 
Sbjct: 73  -KIENVTPGANVHGVIDWDKRYIHMRYHTAVHIIDGVVNNDYKNGL-LTGGQIYDDHARV 130

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D +    I    +  I     D+I     V  R ++ E+A+     A          ++ 
Sbjct: 131 DFSFDI-IDRDLITQIISKAQDVINSGHKVFAREISSEEALKIPGLARTEPGRQLIEKLP 189

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            V   +         GGTHV +TGE+  + ++   +   G +R+   
Sbjct: 190 VVRIIEIENFDFQADGGTHVKNTGEVGRIEMLKIENKGKGHKRLSFK 236


>gi|53718817|ref|YP_107803.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|67642225|ref|ZP_00440985.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|121599376|ref|YP_992436.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei SAVP1]
 gi|124384495|ref|YP_001026760.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei NCTC 10229]
 gi|126448767|ref|YP_001079954.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia mallei NCTC 10247]
 gi|134283926|ref|ZP_01770622.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|167000948|ref|ZP_02266749.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
 gi|167718807|ref|ZP_02402043.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167823415|ref|ZP_02454886.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 9]
 gi|167893507|ref|ZP_02480909.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167901958|ref|ZP_02489163.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|226195349|ref|ZP_03790938.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811549|ref|YP_002896000.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|254175671|ref|ZP_04882331.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|254202143|ref|ZP_04908506.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|254207471|ref|ZP_04913821.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|254298500|ref|ZP_04965952.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|254359890|ref|ZP_04976160.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|52209231|emb|CAH35176.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|121228186|gb|ABM50704.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei SAVP1]
 gi|124292515|gb|ABN01784.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126241637|gb|ABO04730.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134244715|gb|EBA44813.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|147746390|gb|EDK53467.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|147751365|gb|EDK58432.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|148029130|gb|EDK87035.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|157808398|gb|EDO85568.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|160696715|gb|EDP86685.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei ATCC 10399]
 gi|225932551|gb|EEH28549.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506122|gb|ACQ98440.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei MSHR346]
 gi|238523324|gb|EEP86763.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|243063247|gb|EES45433.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
          Length = 243

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIFVHHAIVER 562
             +  +  +  D+T FY   GGQ GD+G     G       D +K K +G     A+   
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        ++   
Sbjct: 134 DYVRIDFATVEPIDREH---VQARLAELVGGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|157866854|ref|XP_001681982.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125433|emb|CAJ03293.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 491

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 148/426 (34%), Gaps = 80/426 (18%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQ------------ITDVQKKAEGIFV 555
            +VV   +  + E GGQ  D G      GD  +              IT+V++  +   +
Sbjct: 52  YDVVLSDSVLFPEGGGQPCDHGTLRVVSGDNDKADPSCDATAAPPLSITNVRRVGDTCIL 111

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA--------LSTILGS---- 603
                    L    ++   +D+  R     +H+  HLL           L T+  S    
Sbjct: 112 ----TSPAALPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVERKDTLRLPTVSWSLTHP 167

Query: 604 ----HVSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI----- 653
                V   G    P       +T  K I+   +  IE   ND IA +  V   +     
Sbjct: 168 YCFIQVDVGGYASDPASPYHAYITKEKKISDEMVAKIEALCNDAIAHSTTVQCDVFENRE 227

Query: 654 --------------MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
                         ++ +    +  +  +       +R++S++  D     S  C GTH+
Sbjct: 228 VYMREQDRRHQAAAVSADGGAEAFRSRGIPEDVTGPIRIISLDAID-----SCTCCGTHL 282

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVG 758
            +  E+  +Y++ +  ++  + ++  ITG+RA        ++ + L   L  S   + V 
Sbjct: 283 HTLAELQAMYLLHQE-VKGTLVKLYFITGERAAQQFHAMYQRERQLMPELGGSRPDDFVS 341

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII------SEVDSKELKSV 812
            V+   ++   L+ +  +  L+L   +      A     +  +       +VD +    V
Sbjct: 342 VVQRRSKDATDLEKLMKRWTLELASVEAQRIAAAVPASHAATVMVPLRRDDVDLEFFNEV 401

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLSA 860
              L+      ++++   + E+  +  +   +D+  +              AV L + + 
Sbjct: 402 RARLEAAGLRRVVLVSAWAAERCTAGTLASAKDVAGQVFVTGGETPADMEKAVQLVKETL 461

Query: 861 KVLGGG 866
           + + GG
Sbjct: 462 QGMKGG 467


>gi|307243241|ref|ZP_07525412.1| threonine/alanine tRNA ligase second additional domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493369|gb|EFM65351.1| threonine/alanine tRNA ligase second additional domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 464

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 164/429 (38%), Gaps = 58/429 (13%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVER---- 562
           G K+ +VFD+T F+   GGQ  D G  I D GI+  I  + +K EG+  H   + +    
Sbjct: 49  GGKIYMVFDRTLFFPGGGGQAQDGGYVIDDSGIKFDICGINEK-EGLIYHEVRMAKDGLE 107

Query: 563 ---------------------------GILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                                        L+ +    + +++++R      HS  H+L  
Sbjct: 108 SLITSRQGILDSMDQAEKVSMIEDYIGAKLKADPIFRMVLNWEHREDYMHQHSGQHVLSG 167

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
               +     +  G  I  D  + D+          +K +E   N I++Q + +   +++
Sbjct: 168 VFYKL--FSRNTLGLHIGKDLSQLDIE--GEFDHDMVKEVERYANLIVSQEIKIDNFVLD 223

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           R+    +     L     D +R++ +     G      C G H + TG++ L+ I     
Sbjct: 224 RDKLEDTYTRRPLPNTSED-IRILKI-----GDLDINACCGVHSTDTGQLKLIKIKKYY- 276

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EEYR 768
              G  R E + G+RA S+++ +DE    L      ++ N++  +  +        E+ +
Sbjct: 277 HHKGNTRFEYLVGKRAISYILDRDEYFSKLLLKYDTNEANILNAIGNLEDKKDDFAEKNK 336

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828
            L   + + + +  +E L       +  +  ++ + D+  ++++   +    +S +I   
Sbjct: 337 LLLDFYLEARSKSLLEGLR-ENSQGIIVVRGVLDD-DAWMVEALAKYITNNYKSLVI--F 392

Query: 829 GISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886
               + +  V + V + L          + +  A  L    GGG  +MAQ    +    D
Sbjct: 393 ASGGQAQPRVFLQVDKKLAKEESIKLGKVLKDHAG-LADIRGGGSDYMAQGQVLDKKNID 451

Query: 887 QAIAGVASF 895
           + I  + S 
Sbjct: 452 KFIDKIYSI 460


>gi|302423985|ref|XP_003009819.1| tRNA_SAD domain-containing protein [Verticillium albo-atrum
           VaMs.102]
 gi|261361653|gb|EEY24081.1| tRNA_SAD domain-containing protein [Verticillium albo-atrum
           VaMs.102]
          Length = 265

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 22/261 (8%)

Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK----------VEVVFDQTPFYAEAGGQL 528
           K      +    +V A V        A    K            V  DQT FYA+ GGQ 
Sbjct: 6   KTKALYLDNDGGVVTAFVVSCTPFTAASEAHKTLFKTASENDFLVATDQTFFYAQGGGQP 65

Query: 529 GDTG----CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
            DTG       GD  +  +T V+K  EG  +H    E         +   ID   RR  S
Sbjct: 66  ADTGTMTSMITGDAAKFHVTGVRKTTEGTILHLGSFEDSPFEKSDLVTQKIDMDKRRLHS 125

Query: 585 INHSATHLLHHALSTILG--SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             H A H++  A+  +      +++  +   PD    +      I       IE   N +
Sbjct: 126 KIHDAGHIISSAVRKLADAIPDITELKAQHYPDSAFVEFKGF--IDGKHKADIEAAANAL 183

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I +NLP+      +E+ + +  +        +     +V+ E  G +    CGGTH+++T
Sbjct: 184 IDENLPIKVCYWTQEELVRACWSVPETLVLPEGELARAVDIEGAGAY---ACGGTHMATT 240

Query: 703 GEIMLLYIVSESSIRAGIRRI 723
           GE+  + I +    + GI +I
Sbjct: 241 GEVGHVRIRNIKR-QKGISKI 260


>gi|145591738|ref|YP_001153740.1| threonyl/alanyl tRNA synthetase, SAD [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283506|gb|ABP51088.1| Ala-tRNA(Pro) hydrolase [Pyrobaculum arsenaticum DSM 13514]
          Length = 238

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 17/236 (7%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
            +++ E     +SG +  VV D+T F+  AGG   D+G  +  G R       K   G  
Sbjct: 12  YLKEAEATVLEISGNE--VVLDKTVFHDGAGGVAADSGYIVYGGERYSAIAAHK---GGE 66

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           V H +      +    +V  + ++ R +    H+A H+L   L    G+ ++  G  IT 
Sbjct: 67  VVHVLDRAPSFKPGDVVVGVVHWEKRYRKMRLHTAAHILSAVLYNRHGALIT--GGDITH 124

Query: 615 DGLRFDVTHSK--PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           +  R D              +     VN+I A+ + V    + RE+A+       L  K 
Sbjct: 125 EYARDDFNVEGDMATVRKIFEEAVAEVNEIAARGIEVKVYWLPREEALKIPGVVKLAEKM 184

Query: 673 N---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                 +R+V +   D         GG HV +T EI  + I+   +   G +R+  
Sbjct: 185 PPDIPTLRIVEIPGVD-----IQADGGPHVRNTKEIGTVKILKVENRGKGKKRLYY 235


>gi|297834538|ref|XP_002885151.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330991|gb|EFH61410.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 256

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 23/235 (9%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAI 559
           V +A  G ++ ++ D T F+ + GGQ  DTG  +  G   +  + DV+ K +GI +H+ +
Sbjct: 26  VFKAQDG-RIALILDSTLFHPQGGGQPADTGLIVFSGSDFKFSVQDVRSK-DGIVLHYGV 83

Query: 560 VERGI------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            E         +     + +T+D   R+  S  HSA HLL   +  +   H+        
Sbjct: 84  FEGSNPESGMDIEKGKEVYVTVDESRRKLNSRLHSAGHLLDLCMQKVGLGHLEPGKGYHF 143

Query: 614 PDGLRFDVTHSKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           PDG   +   S P    + + K +E   ND+I +   V   I+  E+A       L    
Sbjct: 144 PDGPFVEYKGSVPQGQMAVKQKELEAEANDLITKGGKVYAAILPYEEASVLCGGNL--PD 201

Query: 672 Y---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           Y       R++ +    G       CGGTHVS   +I+ + +  +   + GI ++
Sbjct: 202 YISKGSTPRIIKLGDSPG-----CPCGGTHVSDLSDIIAMKVT-QMRTKKGITKV 250


>gi|302870142|ref|YP_003838779.1| threonyl/alanyl tRNA synthetase SAD [Micromonospora aurantiaca ATCC
           27029]
 gi|302573001|gb|ADL49203.1| Threonyl/alanyl tRNA synthetase SAD [Micromonospora aurantiaca ATCC
           27029]
          Length = 245

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 86/223 (38%), Gaps = 14/223 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +  +  +V D++ FY   GGQ  D G  +  G++ +I   +K               +
Sbjct: 27  LAADPEQGIVLDRSAFYPGGGGQPPDHGVLLWQGVQTRIVGTRK--GDDLWLIPAEGDPV 84

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 +   ++   R  L   HS  H+L   +    G+ V+  G  + P   R D    
Sbjct: 85  PPVGTEVAGAVEDTRRTMLMRTHSGLHVLCGVVFRDFGALVT--GGNMEPGEARMDFNLP 142

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL----LGTKYNDRVRVVS 680
           + +       IE+ VN  +A +  V  R++ R +A+A          L       VR+V 
Sbjct: 143 E-VPPDFKARIEELVNAEVAADRSVAVRVLPRAEALALPDIIRTQSNLIPPEEQEVRIVD 201

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   D         GGTHV+ST +I  + +V   S     RR+
Sbjct: 202 IVGLD-----VQADGGTHVASTAQIGKVQVVKVESKGRANRRV 239


>gi|167918222|ref|ZP_02505313.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei BCC215]
          Length = 243

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 28/229 (12%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIFVHHAIVERGI-- 564
            +  +  D+T FY   GGQ GD+G     G       D +K K +G     A+       
Sbjct: 24  DEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVLAPGQ 83

Query: 565 ------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 ++   +LV  ID+  R +    H+A+HLL   L          +G  +T D +R
Sbjct: 84  AALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTADYVR 137

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYND 674
            D    +PI       ++  + +++    PV T  +  ++ +A        ++       
Sbjct: 138 IDFATVEPIDREH---VQARLAELVGGAHPVTTEWITDDEMVARPELVRTMSVKPPMGLG 194

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 195 RVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|170060836|ref|XP_001865977.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
 gi|167879214|gb|EDS42597.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
          Length = 398

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 130/413 (31%), Gaps = 54/413 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
            +V     G   +V+F+ T  + E GGQ  D G        L +  V +K      H   
Sbjct: 17  RVVSCEPGGTGYQVIFEDTVLFPEGGGQPTDHGWV----DDLPVKSVIRKGPTAI-HFVE 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +    +               HS  HL+        G +            +  
Sbjct: 72  GTSAPFQPGQEVRQ-----------RQHSGQHLITAIFDREFGVNTKSWWLGTEDSYVDL 120

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDR 675
           D   +K +T  +L  +E   N +I     V   +   +D         A   L    +  
Sbjct: 121 D---TKDVTREQLDKVERICNQLIVDCTAVSVAVYQPDDPALKSDVTRATRGLPEDVSGP 177

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +RVV+++  +     S +C GTHV +  ++  +  ++          +  + G R    L
Sbjct: 178 LRVVTIDGIE-----SNMCCGTHVRNLAQLQAIKFLNVEK-GKAKCLVHFLVGGRVLRKL 231

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
               ++       L     + V  + ++    R +Q   + RK+   +  L   KI    
Sbjct: 232 TECYDREVQFNGLLNGGAPSHVDLLRKLQTTVRSVQK--SSRKMSSELAQLEADKINQAP 289

Query: 796 ------FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849
                 +  H     DS  +   +  +  K+    + +   + +       +  +   + 
Sbjct: 290 DPKPKFYTVHRTDGPDSDYINVFLRCV--KLPECFLFVTNAADDTGKGAGQMALQGRPED 347

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP----NGNKADQAIAGVASFLKK 898
             A  L      +L  G G G+       GP      NK  +AI      +++
Sbjct: 348 IAA--LGDPICALLE-GKGNGK-------GPRYNAKVNKL-KAIDQCRKLIEE 389


>gi|167737817|ref|ZP_02410591.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 14]
          Length = 243

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIFVHHAIVER 562
             +     +  D+T FY   GGQ GD+G     G       D +K K +G     A+   
Sbjct: 20  VTAVDAAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAASVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        ++   
Sbjct: 134 DYVRIDFATVEPIDREH---VQARLGELVDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|322489825|emb|CBZ25086.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 491

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 146/427 (34%), Gaps = 82/427 (19%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQ------------ITDVQKKAEGIFV 555
            +V+   +  + E GGQ  D G      GD  +              IT+V++  +   +
Sbjct: 52  YDVILSDSVLFPEGGGQPCDYGTLRVVSGDDNKADPSCEATAAPPLSITNVRRVGDTCVL 111

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA--------LSTILGS---- 603
                    L    ++   +D+  R     +H+  HLL           L T+  S    
Sbjct: 112 ----TSPAPLPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVERKDTLSLPTVSWSLTHP 167

Query: 604 ----HVSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM---- 654
                V        P       +T  K I    +  IE   ND I+ +  V   +     
Sbjct: 168 YCFIQVDVGSYASDPASPYHAYITKEKKIADEMVTKIEALCNDAISHSTAVECDVFENRE 227

Query: 655 ---------------NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
                          + +    +  +  +       +R++S++  D     S  C GTH+
Sbjct: 228 TYMREQDRRHQAAAASADGGEEAFRSRGIPEDVTGPIRIISLDAID-----SCTCCGTHL 282

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN---- 755
            +  E+  +Y++ +  ++  + ++  ITG+RA        ++ + L   L  S+ N    
Sbjct: 283 HTLAELQAMYLLHQE-VKGTLVKLYFITGERAAQQFHAMYQRERHLMPELGGSRPNDFVS 341

Query: 756 VVGR----VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811
           VV R      ++ +  ++  L  A  + Q     +     A V  +     +VD +    
Sbjct: 342 VVQRRSKDATDLEKLMKRWTLELASVEAQRIAATVPSSHAAAVT-VPLRRDDVDLEFFNE 400

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLS 859
           V   L       ++++   + E+  +  +  T+D+  +              AV L + +
Sbjct: 401 VRARLDAVGLRRVVLVSAWAAERCTAGTLASTKDVAGQVFVSGGETPVDMEKAVQLVKET 460

Query: 860 AKVLGGG 866
            + + GG
Sbjct: 461 LEGMKGG 467


>gi|76811885|ref|YP_332812.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|167910190|ref|ZP_02497281.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|217419457|ref|ZP_03450963.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|254190583|ref|ZP_04897090.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195041|ref|ZP_04901470.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|254260089|ref|ZP_04951143.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
 gi|76581338|gb|ABA50813.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|157938258|gb|EDO93928.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169651789|gb|EDS84482.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|217396761|gb|EEC36777.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|254218778|gb|EET08162.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
          Length = 243

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIFVHHAIVER 562
             +     +  D+T FY   GGQ GD+G     G       D +K K +G     A+   
Sbjct: 20  VTAVDAAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAVLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        ++   
Sbjct: 134 DYVRIDFATVEPIDREH---VQARLAELVGGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|126438986|ref|YP_001058304.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 668]
 gi|126218479|gb|ABN81985.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 668]
          Length = 243

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 28/233 (12%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT-DVQK-KAEGIFVHHAIVER 562
             +  +  +  D+T FY   GGQ GD+G     G       D +K K +G     A+   
Sbjct: 20  VTAVDEAGIHLDRTVFYPLGGGQAGDSGTLTLAGGAALAVADTRKAKFDGATPDDAVHVL 79

Query: 563 GI--------LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     ++   +LV  ID+  R +    H+A+HLL   L          +G  +T 
Sbjct: 80  APGQAALAAGVKPGDALVAEIDWAPRHRRMRLHTASHLLCAMLP------YPVDGCSVTA 133

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGT 670
           D +R D    +PI       ++  + +++    PV T  +  ++ +A        ++   
Sbjct: 134 DYVRIDFATVEPIDREH---VQARLAELVDGAHPVTTEWITDDEMVARPELVRTMSVKPP 190

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               RVR++ +E  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 191 MGLGRVRLLRIEGVDL-----QPCGGTHVRNTAEIGALRVAKLEKKSARTRRL 238


>gi|298251913|ref|ZP_06975716.1| Alanyl-tRNA synthetase, class IIc [Ktedonobacter racemifer DSM
           44963]
 gi|297546505|gb|EFH80373.1| Alanyl-tRNA synthetase, class IIc [Ktedonobacter racemifer DSM
           44963]
          Length = 241

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 17/227 (7%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERG 563
           AVSG +  V  D T FY   GGQ+ D G    + G             G   H   ++  
Sbjct: 22  AVSGDE--VALDATIFYPGGGGQMADRGLLSWNQGANQAHVISISNRNGTVWH--TLDYI 77

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
             + E  +  +ID+  R +    H+A  LL   +    G  V+  G  I PD  R D   
Sbjct: 78  PPKPETEVTESIDWNFRYRSMRTHTAFLLLCSVIWREFGIQVT--GGQIYPDRARMDFAL 135

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--AALLG--TKYNDRVRVV 679
            + +    +  +E  VN +IA + P+ T ++ RE A++  A   A +     + D VR+ 
Sbjct: 136 -EYLEKDRIAELEQQVNTLIAADYPIHTYMLPREKALSLSALVRARINQLPPHLDEVRMA 194

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            V           + GGT V+ T EI  + I+   +     +R+E +
Sbjct: 195 EVVG-----FDVQVDGGTLVNHTREIGGIQIIRSENKGRINKRLEIV 236


>gi|148256966|ref|YP_001241551.1| putative alanyl-tRNA synthetase-like protein [Bradyrhizobium sp.
           BTAi1]
 gi|146409139|gb|ABQ37645.1| putative alanyl-tRNA synthetase related protein [Bradyrhizobium sp.
           BTAi1]
          Length = 243

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 5/213 (2%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V+  ++PFY   GGQL D G    +GI  ++   +  A+G++             +  
Sbjct: 29  GAVLLARSPFYPGGGGQLPDRGTIAWNGIVREVVGFEVTADGLWHLIGDDA----IPDGM 84

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L +D   R+++   H+  HL++ A+ T+    +         D    D    K +   
Sbjct: 85  IELRVDQAFRQRMCEQHTVAHLVNSAVYTLFDGALLTGVRMTETDEFSVDFDLPK-VAPE 143

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L++++D VN  IA + PV T  M+ + A  +       +    R     +   D     
Sbjct: 144 QLRAVQDAVNTAIADDRPVRTFDMDYDTAQTTAGLFRAKSVAPPRQADGLIRIVDIDGLD 203

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              CGGTH++ST     + I+   +     RR+
Sbjct: 204 RQACGGTHLASTARARRIRILKVDNKGRQNRRL 236


>gi|255946485|ref|XP_002564010.1| Pc20g15380 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588745|emb|CAP86867.1| Pc20g15380 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 266

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 23/257 (8%)

Query: 486 NGVSSIVKAIVQQGEIVEEA------VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539
           + + + V AI    ++ E         S +   +V + T F+ + GGQ  DTG   G   
Sbjct: 17  HTLETTVTAIFPFNDLEESNRLLFKDASEEHHVIVTEHTIFHPQGGGQPSDTGVLKGPSG 76

Query: 540 RLQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
              +T V+  A G  +H  + E      +   +++  ID + R   S  H+A H+L  ++
Sbjct: 77  AFAVTAVRTDANGQVLHLGLFEGPPSAFKEGDTVLQAIDVERRLLYSRLHTAGHVLGASV 136

Query: 598 STILGSHV---SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
             +L   +    +  +   PD    +   S      E  SI++ ++  IA  +PV     
Sbjct: 137 RHLLEKEIENFDELKASHFPDSAACEFQGSIEGKWKE--SIQNKLDGYIAAKMPVQIEWW 194

Query: 655 NREDAIASGAAALLGTKY----NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
           + ED  + G   L+  +      ++ RVV++   +        CGGTHV ST     + +
Sbjct: 195 DEEDFRSRGLERLIPDRSLVPAGEKSRVVNIVGAE-----VYPCGGTHVDSTDLCGSVTV 249

Query: 711 VSESSIRAGIRRIEAIT 727
              S  + G  R+  + 
Sbjct: 250 KKISRKQ-GNSRVSYVV 265


>gi|167043424|gb|ABZ08126.1| hypothetical protein ALOHA_HF4000APKG1C9ctg2g29 [uncultured marine
           microorganism HF4000_APKG1C9]
          Length = 243

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 16/230 (6%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
                +      ++  Q+  Y   GGQ GDTG  I DGI  + ++      G F+ H + 
Sbjct: 18  FEASVIDVTDDSLILSQSYCYPRGGGQPGDTGLFIRDGIGREFSET---LGGEFIRHPVD 74

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           E         +   I+ + R + +  H+A H++      + G+     G+ I+ +  R D
Sbjct: 75  EIADFSVGDEVSCVINGERRNRHASMHTAQHIISALADDLWGAETV--GNQISTEYTRID 132

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYND---R 675
                     + +++ D VN +I     V      R+               +       
Sbjct: 133 FLFPNRDEY-DSETLADAVNSVIGSGTLVNVHEWPRDAVKEHEHMRHTNFMERIPSSITE 191

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +RVV +E  D        C GTHV ST ++  + I S  S  AG  RI  
Sbjct: 192 LRVVEIEGIDL-----CPCAGTHVGSTNDLEPIVITSVKSKGAGKFRITY 236


>gi|327293520|ref|XP_003231456.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326466084|gb|EGD91537.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 265

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 14/239 (5%)

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA- 550
            A+ +    + +  S +   VV ++T F+ + GGQ  D G      G    +T V+  A 
Sbjct: 28  AALEEANRQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSPSGSSFTVTSVRMDAL 87

Query: 551 -EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V    
Sbjct: 88  QDGQVLHFGRFGPSTFAPGETVQQEIDVEKRFLFSRLHTAGHVLGAAVKHLVEKDVDGFE 147

Query: 610 SCITPDGLRFDVTHSKPITSAELK-SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                          + +   + K SI+D VN+ IA  +PV     + +D  + G   L+
Sbjct: 148 ELKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLI 207

Query: 669 GT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    ++ RVV++   +        CGGTHV ST       +   S    G  R+
Sbjct: 208 PDPTLVPPGEKSRVVNIVGAE-----VYPCGGTHVDSTDLCGQTTVKKISR-SKGTSRV 260


>gi|18313258|ref|NP_559925.1| alanyl-tRNA synthetase related protein [Pyrobaculum aerophilum str.
           IM2]
 gi|18160779|gb|AAL64107.1| alanyl-tRNA synthetase related protein [Pyrobaculum aerophilum str.
           IM2]
          Length = 238

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 11/229 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E     +     EV+ D+T F+   GG   D+G  I    R       K   G  V H +
Sbjct: 15  EFEATVLEVNGNEVILDRTAFHDGTGGVQADSGYIIFGNERYFAAASHK---GGEVVHVL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
               + +    +   +D++ R +    H+A H+L   L     + ++  G  IT +  R 
Sbjct: 72  DRAPVFKPGDVVRGELDWEKRYKKMRLHTAAHILSAVLYDKYNALIT--GGEITHEYARD 129

Query: 620 DVTHSK--PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRV 676
           D              +     VN+I  + + +    + RE+A+       L  +   D  
Sbjct: 130 DFNIEGDMATVRKAFEEAVAVVNEIAQRGIEIKVYWLPREEALKIPGVVKLAERMPPDIP 189

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           R+  VE     V      GG HV +T EI ++ I+   +   G +R+  
Sbjct: 190 RLRIVEIPGVDV---QADGGPHVKNTREIGVVKIIKVENRGKGKKRLYY 235


>gi|167565993|ref|ZP_02358909.1| alanyl-tRNA synthetase-related protein [Burkholderia oklahomensis
           EO147]
 gi|167574538|ref|ZP_02367412.1| alanyl-tRNA synthetase-related protein [Burkholderia oklahomensis
           C6786]
          Length = 239

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 7/220 (3%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            +  +   V   Q PFY   GGQL D G    +G    +T  ++   G+++        +
Sbjct: 19  VLEARPGAVRLSQHPFYPGGGGQLPDLGAVRWEGGVETVTGFREDERGLWI---EFADRV 75

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTH 623
                 +  ++D   RR +   H+  H+L+  +       +   G  +  D   R D   
Sbjct: 76  EIVGD-VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALV-TGVQMNADRTARIDFDL 133

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L+++E  +NDI+ ++LPV TR +   +A          +          V  
Sbjct: 134 PDADN-DRLRALEAELNDIVRRDLPVRTRYVPLAEAQQESGLLRSRSVAPPPTPDGLVRI 192

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +        CGGTH++STGE   + I+   +     RR+
Sbjct: 193 VEIDGLDCQACGGTHLASTGESRPVRILKIENKGRSNRRV 232


>gi|255638817|gb|ACU19712.1| unknown [Glycine max]
          Length = 262

 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 94/227 (41%), Gaps = 19/227 (8%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVE-- 561
              +  +  D+T FY + GGQ  DTG  +    D  +  ++DV+ K +GI  H+   E  
Sbjct: 35  DDGRHVLTLDRTIFYPQGGGQPADTGFVLIHGFDNNKFLVSDVRSK-DGIVFHYGFFENL 93

Query: 562 ----RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG- 616
                  L     + L +D   R+  S  HSA HLL   L  I   ++    +   PDG 
Sbjct: 94  GGEFEPTLEKGKEVSLFVDQPRRKLNSRLHSAGHLLDICLPRIGLGNLEPGKAYHFPDGP 153

Query: 617 -LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND- 674
            + +  T S+    ++ K +E   N +I+    V   I+  ++A       L      + 
Sbjct: 154 WVEYKGTISQNEMQSKQKDLELEANALISMGGKVSVDILPYDEAAKLCGGCLPDYVPKES 213

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             R+V +    G       CGGTHV+   +I  +  VS+   + G+ 
Sbjct: 214 TPRIVRIRDNPG-----CPCGGTHVADISDIKQIK-VSQIRSKKGLT 254


>gi|302815613|ref|XP_002989487.1| hypothetical protein SELMODRAFT_428080 [Selaginella moellendorffii]
 gi|300142665|gb|EFJ09363.1| hypothetical protein SELMODRAFT_428080 [Selaginella moellendorffii]
          Length = 256

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITD 545
            ++ V +I +  E V          +V D+T  Y + GGQ  D G    +      Q+ D
Sbjct: 26  ATAKVLSITKDSERVA---------IVSDRTILYPQGGGQPADRGSISSLNGDTTFQVQD 76

Query: 546 VQKKAEGIFVHHAIVER--GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            + K  G+  H+ + E           + L ++ Q R   S  H+A HL+   +  ++G 
Sbjct: 77  TRMK-NGVVYHYGVFEPSDSTFEAGQEVTLRVESQRRELHSRLHTAGHLIDVCM-ELVGR 134

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIA 661
            +    +  +P+G   +   + P    E   +  +  ++ +IA    V   ++  ++A  
Sbjct: 135 TLEPAKANHSPEGAFVEYIGAIPSGEIESTRVALQKEIDRLIASGASVNASVVPYDEAAG 194

Query: 662 SGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
               +L      D   R+V +     G H+   CGGTHV     +  L +  +  ++ G+
Sbjct: 195 LCGGSLPDYISKDSSPRIVRI-----GDHTGCPCGGTHVDDVSSLTGLKVT-QIRVKKGV 248

Query: 721 RRI 723
            ++
Sbjct: 249 TKV 251


>gi|302815607|ref|XP_002989484.1| hypothetical protein SELMODRAFT_428079 [Selaginella moellendorffii]
 gi|300142662|gb|EFJ09360.1| hypothetical protein SELMODRAFT_428079 [Selaginella moellendorffii]
          Length = 236

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITD 545
            ++ V +I +  E V          +V D+T  Y + GGQ GD G    +      Q+ D
Sbjct: 6   ATAKVLSITKDSERVA---------IVSDRTILYPQGGGQPGDRGSISSLNGDTTFQVQD 56

Query: 546 VQKKAEGIFVHHAIVER--GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            + K  G+  H+ + E           + L ++ Q R   S  H+A HL+   +  + G 
Sbjct: 57  TRMK-NGVVYHYGVFEPSDSTFEAGQEVSLRVESQRRELHSRLHTAGHLIDVCMKLV-GR 114

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIA 661
            +       +P+G   +   + P    E   +  +  ++ +IA    V   ++  ++A  
Sbjct: 115 TLEPAKGNHSPEGAFVEYIGAIPSGEIESTRVALQKEIDRLIASGASVNASVLPYDEAAG 174

Query: 662 SGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
               +L      D   R+V +     G H+   CGGTHV     +  L +  +  ++ G+
Sbjct: 175 LCGGSLPDYISKDSSPRIVRI-----GDHTGCPCGGTHVDDVSSLTGLKVT-QIRVKKGV 228

Query: 721 RRI 723
            ++
Sbjct: 229 TKV 231


>gi|302762474|ref|XP_002964659.1| hypothetical protein SELMODRAFT_406072 [Selaginella moellendorffii]
 gi|300168388|gb|EFJ34992.1| hypothetical protein SELMODRAFT_406072 [Selaginella moellendorffii]
          Length = 256

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 24/243 (9%)

Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITD 545
            ++ V +I +  E V          +V D+T  Y + GGQ  D G    +      Q+ D
Sbjct: 26  ATAKVLSITKDSERVA---------IVSDRTILYPQGGGQPADRGSISSLNGDTTFQVQD 76

Query: 546 VQKKAEGIFVHHAIVER--GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            + K  G+  H+ + E           + L ++ Q R   S  H+A HL+   +  + G 
Sbjct: 77  TRMK-NGVVYHYGVFEPSDSTFEAGQEVTLRVESQRRELHSRLHTAGHLIDVCMKLV-GR 134

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSI--EDNVNDIIAQNLPVVTRIMNREDAIA 661
            +       +P+G   +   + P    E   +  +  ++ +IA    V   +++ ++A  
Sbjct: 135 TLEPAKGNHSPEGAFVEYIGAIPSGEIESTRVALQKEIDRLIASGASVNASVLSYDEAAG 194

Query: 662 SGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
               +L      D   R+V +     G H+   CGGTHV     +  L +  +  ++ G+
Sbjct: 195 LCGGSLPDYISKDSSPRIVRI-----GDHTGCPCGGTHVDDVSSLTGLKVT-QIRVKKGV 248

Query: 721 RRI 723
            ++
Sbjct: 249 TKV 251


>gi|114764320|ref|ZP_01443548.1| hypothetical protein 1100011001356_R2601_25346 [Pelagibaca
           bermudensis HTCC2601]
 gi|114543268|gb|EAU46285.1| hypothetical protein R2601_25346 [Roseovarius sp. HTCC2601]
          Length = 238

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 18/236 (7%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
           A ++    V  A + Q+  +V D+T F+   GGQ GD+G     G  L I    +     
Sbjct: 10  AYLRDATGVVRAHT-QEGGIVLDRTVFFPRGGGQPGDSGRLDWHGRSLSIATAVQGERDA 68

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            +        +      +   +D++ R +    HSA HLL   +       +   G  I+
Sbjct: 69  VILVPAEPLPLPAPGTVVSQRLDWERRHRHMRVHSALHLLSVVVP------LPVTGGNIS 122

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL----- 668
               R D     P      ++IE+ +N  + ++L +    +  E+A+     AL+     
Sbjct: 123 AGHGRLDFA--TPDLPDSREAIEEMLNGFVERDLAISADWV--EEAVLDANPALVRTMTV 178

Query: 669 -GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              +    VR+V +   +  +     CGGTHV+ TGEI  + I    +     RR+
Sbjct: 179 QPPRGQGAVRLVRIGTGEEQID-LQPCGGTHVARTGEIGRIRIGKIENKGRQNRRV 233


>gi|146081949|ref|XP_001464407.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068499|emb|CAM66793.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 491

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 145/427 (33%), Gaps = 80/427 (18%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQ------------ITDVQKKAEGIF 554
             +V+   +  + E GGQ  D G      GD  +              IT+V++  +   
Sbjct: 51  TYDVILSDSVLFPEGGGQPCDHGTLRVVSGDNDKADPSCGATAAPPLSITNVRRVGDTCV 110

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA--------LSTILGS--- 603
           +         L    ++   +D+  R     +H+  HLL           L T+  S   
Sbjct: 111 L----TSPAALPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVEREDTLRLPTVSWSLTH 166

Query: 604 -----HVSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
                 V   G    P       +T  K I+   +  IE   ND IAQ+  V   +    
Sbjct: 167 PYCFIQVDVGGYASDPASPYHAYITKEKKISDEMVAKIEVLCNDAIAQSTAVQCDVFENR 226

Query: 658 DA-------------------IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +                      +  +  +       +R++S++  D     S  C GTH
Sbjct: 227 EVYMREQDRRHQTAAASADGGTEAFRSRGIPEDVTGPIRIISLDAID-----SCTCCGTH 281

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVV 757
           + +  E+  +Y++ +  ++  + ++  ITG+RA         + + L   L  S   + V
Sbjct: 282 LRTLAELQAMYLLHQE-VKGTLVKLYFITGKRAARQFHAMYHRERQLMPELGGSRPNDFV 340

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII------SEVDSKELKS 811
             V+   ++   L+ +  +  L+L   +      A     +  +       +VD +    
Sbjct: 341 SVVQRRSKDATDLEKLMKRWTLELASVEAQRIAAAVPASHAATVTVPLRRDDVDLEFFNE 400

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLS 859
           V   L       ++++   + E+  +  +   +D+  +              AV L + +
Sbjct: 401 VRARLDAAGLRRVVLVSAWAAERCTAGTLASAKDVAGQVFVTGGETPADMEKAVQLVKET 460

Query: 860 AKVLGGG 866
            + + GG
Sbjct: 461 LEGVKGG 467


>gi|56067691|gb|AAV70313.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 130

 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIF 554
               VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V     G  
Sbjct: 1   NNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLV-YNRGGYV 59

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H  +VE G LR    +   +D   R+    NHSATH L+H+L  +LG    Q GS + P
Sbjct: 60  LHIGVVE-GTLRVGDEVHCHMDVVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVP 118

Query: 615 DGLRFDVTHSKP 626
           + LRFD T+   
Sbjct: 119 EKLRFDFTNKSA 130


>gi|283768510|ref|ZP_06341422.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bulleidia extructa W1219]
 gi|283104902|gb|EFC06274.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bulleidia extructa W1219]
          Length = 369

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/399 (16%), Positives = 141/399 (35%), Gaps = 42/399 (10%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+       ++    F++T FY + GG L D G   G    +++TD++     +  H   
Sbjct: 10  ELKTTIKEEKEGYYQFEETIFYGDKGGMLADVGTING----MKVTDLKYDENEVLWHKV- 64

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
              GIL     + + +D + R   +   +  H +          ++   G       +  
Sbjct: 65  --DGILT--DPIEMKVDRETRYLNTSVQTLFHAMDGYYRRKKDKYIIAIGVQ----AMNQ 116

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
               ++ +   ELK+I+  ++ +I  ++PV    +                +Y     V 
Sbjct: 117 WYEVNETVDEEELKNIQAYMDKVIWDDVPVEFSYI--------KGKDYPDLRYQGHDFVR 168

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            V+    G +    CG  HV+ T EI    ++       G  R+    G   +     + 
Sbjct: 169 MVK---VGEYDKQPCGTLHVNHTSEIGSAVVLGVEKTSRG-TRVLCTVGPATKKRFQAEH 224

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
           + L   +    V    +  R+E++  + ++        K ++   +L   + +D   +  
Sbjct: 225 QYLLEASRQAGVKGSELKERIEKLQTDLKEKNKSEQVWKEKVLAFELERVRTSDEKVI-- 282

Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859
              E+D    K +  +L   + +G+          +  V +   E       A +  +  
Sbjct: 283 ---EIDGFTSKELASSLNSFLNNGVEKAFVSKVNGEVHVALGSGEG-----QAREYLKKI 334

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            + L    GGG P +         + D++I  V + LK+
Sbjct: 335 QESLNV-RGGGSPKLV------SFQCDESIEKVLNKLKE 366


>gi|302506078|ref|XP_003014996.1| hypothetical protein ARB_06756 [Arthroderma benhamiae CBS 112371]
 gi|291178567|gb|EFE34356.1| hypothetical protein ARB_06756 [Arthroderma benhamiae CBS 112371]
          Length = 265

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 14/239 (5%)

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA- 550
            A+ +    + +  S +   VV ++T F+ + GGQ  D G      G    +T V+  A 
Sbjct: 28  AALEEANRQLFKEGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSPSGASFTVTSVRMDAL 87

Query: 551 -EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V    
Sbjct: 88  QDGQVLHFGRFGPSTFAPGETVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFE 147

Query: 610 SCITPDGLRFDVTHSKPITSAELK-SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                          + +   + K +I+D VN+ IA  +PV     + +D  + G   L+
Sbjct: 148 ELKASHFPDSAACEFRGLIEGKWKPNIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLI 207

Query: 669 GT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    ++ RVV++   +        CGGTHV ST       +   S    G  R+
Sbjct: 208 PDPTLVPPGEKSRVVNIVGAE-----VYPCGGTHVDSTDLCGQTTVKKISR-SKGTSRV 260


>gi|56067689|gb|AAV70312.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 130

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIF 554
               VEE  +GQ+  V+ D+T FYAE+GGQ+ D G  +    +     ++ V     G  
Sbjct: 1   NNAFVEEVQAGQECGVILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLV-YNRGGYV 59

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H  +VE G LR    +   +D   R+    NHSATH L+H+L  +LG    Q GS + P
Sbjct: 60  LHIGVVE-GTLRVGDEVHCHMDVMRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVP 118

Query: 615 DGLRFDVTHSKP 626
           + LRFD T+   
Sbjct: 119 EKLRFDFTNKSA 130


>gi|322497813|emb|CBZ32889.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 491

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 145/427 (33%), Gaps = 80/427 (18%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQ------------ITDVQKKAEGIF 554
             +V+   +  + E GGQ  D G      GD  +              IT+V++  +   
Sbjct: 51  TYDVILSDSVLFPEGGGQPCDHGTLRVVSGDNDKADPSCGATAAPPLSITNVRRVGDTCV 110

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA--------LSTILGS--- 603
           +         L    ++   +D+  R     +H+  HLL           L T+  S   
Sbjct: 111 L----TSPAALPVGATVHQMVDWPRRMDHMQHHTGQHLLTAVVEREDTLRLPTVSWSLTH 166

Query: 604 -----HVSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
                 V   G    P       +T  K I+   +  IE   ND IAQ+  V   +    
Sbjct: 167 PYCFIQVDVGGYASDPASPYHAYITKEKKISDEMVAKIEVLCNDAIAQSTAVQCDVFENR 226

Query: 658 DA-------------------IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +                      +  +  +       +R++S++  D     S  C GTH
Sbjct: 227 EVYMREQDRRHQTAAASADGGTEAFRSRGIPEDVTGPIRIISLDAID-----SCTCCGTH 281

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVV 757
           + +  E+  +Y++ +  ++  + ++  ITG+RA         + + L   L  S   + V
Sbjct: 282 LRTLAELQAMYLLHQE-VKGTLVKLYFITGKRAARQFHAMYHRERQLMPELGGSRPNDFV 340

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII------SEVDSKELKS 811
             V+   ++   L+ +  +  L+L   +      A     +  +       +VD +    
Sbjct: 341 SVVQRRSKDATDLEKLMKRWTLELASVEAQRIAAAVPASHAATVTVPLRRDDVDLEFFNE 400

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF------------NAVDLARLS 859
           V   L       ++++   + E+  +  +   +D+  +              AV L + +
Sbjct: 401 VRARLDAAGLRRVVLVSAWAAERCTAGTLASAKDVAGQVFVTGGETPADMEKAVQLVKET 460

Query: 860 AKVLGGG 866
            + + GG
Sbjct: 461 LEGMKGG 467


>gi|255078740|ref|XP_002502950.1| predicted protein [Micromonas sp. RCC299]
 gi|226518216|gb|ACO64208.1| predicted protein [Micromonas sp. RCC299]
          Length = 346

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 101/275 (36%), Gaps = 16/275 (5%)

Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ--KVEVVFDQ 517
           Y   R             +   +  ++   +  +A V   E VE+       +  VV D+
Sbjct: 66  YTASRTLISPARAAMTSPKTELVYFSDTYQTSCEAKVVSCEPVEDPGDDGVARFVVVLDR 125

Query: 518 TPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERG---ILRTEMSLVL 573
           T  Y   GGQ  DTG  +G G     +  V    +G   H    E         +  +++
Sbjct: 126 TVAYPAGGGQPSDTGRIVGPGGVAFVVASVASTKDGTVTHLGEFEEEGAAPFNADDEVIV 185

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTI--LGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           T+D   R   +  HSA HLL  A++ I      +        PD    + T        +
Sbjct: 186 TVDADKRLLHARIHSAGHLLDVAMTNIGFGPDVMVPAKGLHQPDQAYVEYTGKVEGLDKD 245

Query: 632 --LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGV 688
             +  ++  +N +++        +M  ++A  +    L      D   R+V++  +  G 
Sbjct: 246 KLMADLKAEMNKLVSLGGGSAAAMMGYDEAAEACGGELPSYIPKDSTPRIVTIVPDTAG- 304

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                CGGTHV++  EI  + +     ++ G  R+
Sbjct: 305 ---CPCGGTHVANVKEIGSVDVTGV-RVKKGTTRV 335


>gi|260426183|ref|ZP_05780162.1| threonyl/alanyl tRNA synthetase, SAD [Citreicella sp. SE45]
 gi|260420675|gb|EEX13926.1| threonyl/alanyl tRNA synthetase, SAD [Citreicella sp. SE45]
          Length = 238

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 84/230 (36%), Gaps = 16/230 (6%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +G +V     G    +V D + FY + GGQ GD+G     G  + I        G  V  
Sbjct: 16  EGRVVAHTPEG---GIVLDASIFYPKGGGQPGDSGRIGWHGGGVSIATAVPGEAGDVVLV 72

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 +      +   +D+  R +    HSA HLL   +       +   G  I     
Sbjct: 73  PAEPVALPAVGTYVTQRLDWDRRHRHMRVHSALHLLTVVIP------LPVTGGAIAAGSG 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYN 673
           R D     P    +   IE  +N ++ ++L +    ++     A+        +   +  
Sbjct: 127 RLDFAM--PDAPEDRDQIEAALNALVDRDLVISEDWIDESVLDANPGLVKTMTVQPPRGR 184

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             VR+V +      V     CGGTHV+ TGEI  L +    +     RR+
Sbjct: 185 GPVRLVRIGAGRDQVD-LQPCGGTHVARTGEIGSLRLGKIENKGRQNRRV 233


>gi|313223171|emb|CBY43396.1| unnamed protein product [Oikopleura dioica]
          Length = 215

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 14/212 (6%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           S   CGGTH+        L I +E +I  GIRR+ A+TG  A       D + + LA   
Sbjct: 7   SVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEKA----DRQAQRLAKAN 62

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHK-----IADVNFMSHIISE 803
           ++ + +V     E+ E  +      A +R + L  +  + +K        +N +  ++  
Sbjct: 63  QLKEKDVNELKAEVKEAIKAKNTAEANQRAISLGWKSFNMNKRLKSMEYALNKLKSVL-- 120

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
           +++K L  ++    KK     ++L       K  + +  T        A +     + ++
Sbjct: 121 INNKVLNEILKLYAKKSPKSHVLLFSADHTAKKVLCLAQTPK-GSTLKANEWVSSISPLI 179

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895
             G GGG+   AQ+ G N +    A+A    F
Sbjct: 180 -DGRGGGKDVQAQASGKNVSGLKGALAKAKEF 210


>gi|254191172|ref|ZP_04897677.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254301829|ref|ZP_04969272.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|157811604|gb|EDO88774.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 406e]
 gi|157938845|gb|EDO94515.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 242

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 7/220 (3%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            V  +   V   + PFY   GGQL D G    +G    +    +   G+++       G+
Sbjct: 22  VVDTRPGAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWI---EFANGV 78

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTH 623
                 +  ++D   RR +   H+  H+L+  +       +   G  +  D   R D   
Sbjct: 79  EIVGD-VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALV-TGVQMNADRTARIDFDL 136

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L+++E  +ND++ ++LPV TR +   DA  +       +          V  
Sbjct: 137 PDADN-DRLRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRI 195

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     S  CGGTH++STG    + I+   +     RR+
Sbjct: 196 VEIDGLDSQACGGTHLASTGGSSPVRILKIENKGRSNRRV 235


>gi|53722342|ref|YP_111327.1| alanyl-tRNA synthetase related protein [Burkholderia pseudomallei
           K96243]
 gi|76817280|ref|YP_335495.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei 1710b]
 gi|126442323|ref|YP_001062866.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126458214|ref|YP_001075819.1| threonyl/alanyl tRNA synthetase domain-containing protein
           [Burkholderia pseudomallei 1106a]
 gi|167723888|ref|ZP_02407124.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei DM98]
 gi|167742862|ref|ZP_02415636.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 14]
 gi|167820033|ref|ZP_02451713.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 91]
 gi|167828416|ref|ZP_02459887.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 9]
 gi|167849866|ref|ZP_02475374.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei B7210]
 gi|167898468|ref|ZP_02485869.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 7894]
 gi|167915173|ref|ZP_02502264.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 112]
 gi|226198480|ref|ZP_03794047.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|237507665|ref|ZP_04520380.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei MSHR346]
 gi|242312347|ref|ZP_04811364.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|254183694|ref|ZP_04890286.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|254193426|ref|ZP_04899860.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|254263376|ref|ZP_04954241.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
 gi|52212756|emb|CAH38788.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei K96243]
 gi|76581753|gb|ABA51227.1| putative alanyl-tRNA synthetase related protein [Burkholderia
           pseudomallei 1710b]
 gi|126221814|gb|ABN85319.1| putative alanine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126231982|gb|ABN95395.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106a]
 gi|169650179|gb|EDS82872.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei S13]
 gi|184214227|gb|EDU11270.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1655]
 gi|225929403|gb|EEH25423.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|234999870|gb|EEP49294.1| putative alanyl-tRNA synthetase [Burkholderia pseudomallei MSHR346]
 gi|242135586|gb|EES21989.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1106b]
 gi|254214378|gb|EET03763.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 1710a]
          Length = 239

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 7/220 (3%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            V  +   V   + PFY   GGQL D G    +G    +    +   G+++       G+
Sbjct: 19  VVDTRPGAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWI---EFANGV 75

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTH 623
                 +  ++D   RR +   H+  H+L+  +       +   G  +  D   R D   
Sbjct: 76  EIVGD-VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALV-TGVQMNADRTARIDFDL 133

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L+++E  +ND++ ++LPV TR +   DA  +       +          V  
Sbjct: 134 PDADN-DRLRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRI 192

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     S  CGGTH++STG    + I+   +     RR+
Sbjct: 193 VEIDGLDSQACGGTHLASTGGSSPVRILKIENKGRSNRRV 232


>gi|53716611|ref|YP_105641.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           23344]
 gi|121597260|ref|YP_990027.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei SAVP1]
 gi|124382398|ref|YP_001024050.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei NCTC
           10229]
 gi|126445649|ref|YP_001078560.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei NCTC
           10247]
 gi|134282625|ref|ZP_01769329.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|167906819|ref|ZP_02494024.1| alanyl-tRNA synthetase-related protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167923008|ref|ZP_02510099.1| alanyl-tRNA synthetase-related protein [Burkholderia pseudomallei
           BCC215]
 gi|238562041|ref|ZP_00441025.2| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|52422581|gb|AAU46151.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           23344]
 gi|121225058|gb|ABM48589.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei SAVP1]
 gi|124290418|gb|ABM99687.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10229]
 gi|126238503|gb|ABO01615.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei NCTC 10247]
 gi|134246182|gb|EBA46272.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 305]
 gi|238523377|gb|EEP86816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 239

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 7/220 (3%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            V  +   V   + PFY   GGQL D G    +G    +    +   G+++       G+
Sbjct: 19  VVDTRPGAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWI---EFANGV 75

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTH 623
                 +  ++D   RR +   H+  H+L+  +       +   G  +  D   R D   
Sbjct: 76  EIVGD-VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALV-TGVQMNADRTARIDFDL 133

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L+++E  +ND++ ++LPV TR +   DA  +       +          V  
Sbjct: 134 PDADN-DRLRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRI 192

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     S  CGGTH++STG    + I+   +     RR+
Sbjct: 193 VEIDGLDSQACGGTHLASTGGSSPVRILKIENKGRSNRRV 232


>gi|302661757|ref|XP_003022542.1| hypothetical protein TRV_03341 [Trichophyton verrucosum HKI 0517]
 gi|291186493|gb|EFE41924.1| hypothetical protein TRV_03341 [Trichophyton verrucosum HKI 0517]
          Length = 265

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 91/239 (38%), Gaps = 14/239 (5%)

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA- 550
            A+ +    + +  S +   VV ++T F+ + GGQ  D G      G    +T V+  A 
Sbjct: 28  AALEEANRQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSPSGSSFTVTSVRMDAL 87

Query: 551 -EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H              +   ID + R   S  H+A H+L  A+  ++   V    
Sbjct: 88  QDGQVLHFGRFGPSTFAPGEMVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKEVEGFE 147

Query: 610 SCITPDGLRFDVTHSKPITSAELK-SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                          + +   + K SI+D VN+ IA  +PV     + +D  + G   L+
Sbjct: 148 ELKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAAAMPVEIEWWDEDDFRSRGLERLI 207

Query: 669 GT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    ++ RVV++   +        CGGTHV ST       +   S    G  R+
Sbjct: 208 PDPTLVPPGEKSRVVNIVGAE-----VYPCGGTHVDSTDLCGQTTVKKISR-SKGTSRV 260


>gi|217418597|ref|ZP_03450104.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|251766941|ref|ZP_02265440.2| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
 gi|254173946|ref|ZP_04880609.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           10399]
 gi|254200437|ref|ZP_04906802.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|254204463|ref|ZP_04910816.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|254356690|ref|ZP_04972965.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|147748049|gb|EDK55124.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei FMH]
 gi|147754049|gb|EDK61113.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei JHU]
 gi|148025717|gb|EDK83840.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei 2002721280]
 gi|160694993|gb|EDP84963.1| alanyl-tRNA synthetase-related protein [Burkholderia mallei ATCC
           10399]
 gi|217397901|gb|EEC37916.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           pseudomallei 576]
 gi|243064432|gb|EES46618.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           mallei PRL-20]
          Length = 242

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 7/220 (3%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            V  +   V   + PFY   GGQL D G    +G    +    +   G+++       G+
Sbjct: 22  VVDTRPGAVRLSRHPFYPGGGGQLPDLGTVRWEGGVETVAGFSEDGGGLWI---EFANGV 78

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTH 623
                 +  ++D   RR +   H+  H+L+  +       +   G  +  D   R D   
Sbjct: 79  EIVGD-VQSSVDAAFRRAMRELHTDLHVLNALVYRDFDGALV-TGVQMNADRTARIDFDL 136

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L+++E  +ND++ ++LPV TR +   DA  +       +          V  
Sbjct: 137 PDADN-DRLRALEAEMNDVVRRDLPVRTRYVPLADAQQASGLLRSRSVAPPPTADGLVRI 195

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     S  CGGTH++STG    + I+   +     RR+
Sbjct: 196 VEIDGLDSQACGGTHLASTGGSSPVRILKIENKGRSNRRV 235


>gi|46114298|ref|XP_383167.1| hypothetical protein FG02991.1 [Gibberella zeae PH-1]
          Length = 713

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 124/354 (35%), Gaps = 53/354 (14%)

Query: 524 AGGQLGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           +GGQ  D G            + IT+VQ++     +H A      +     +   ID++ 
Sbjct: 366 SGGQPCDHGTITPLSGEDLAPIPITNVQREGLRCIIHSAK----PIAPGTEVRQEIDWKR 421

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R      H+  HLL   +           G  +  DG    V   +  T  E+++I+   
Sbjct: 422 RWDHMQQHTGQHLLSAVMMKNHELKTLGWG--MGTDGGFNYVDLQRKPTDEEMQAIQMEC 479

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            + I +NL +     +                               G +    C GTH+
Sbjct: 480 AEKIRENLSIKVDTPDNTKDHKLP-----------------------GDYD--KCCGTHL 514

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--QGNVV 757
           + T  I L+ + S  S+     R+  I G R  +        + ++A  + VS     VV
Sbjct: 515 AQTSHISLIILGSTQSVHGKNCRLSFIAGDRGINLASSSVSAINTIAKMMSVSSNPTEVV 574

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI------ADVNFMSHIISEVDSKELKS 811
            R   + +    L+   ++RKL L V                +N   +      +  +  
Sbjct: 575 TRATALSDSVTDLK--RSERKLLLEVAKFESEHAIRSIIQNKMNAYIYRYEG-STDFINK 631

Query: 812 VMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVL 863
           ++   +  ++    ++++ I + K    +++V + +     AVD +A+    V+
Sbjct: 632 IVGETRDFLEGTEFVVVIAIGEPKGGGPVVIVGDKV-----AVDAMAKKVKSVV 680


>gi|225432302|ref|XP_002273600.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 256

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 16/232 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVE--- 561
              +  ++ D T F+ + GGQ  DTG        I+  + DV+ K +G+  H+  +E   
Sbjct: 30  DDGRRALILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRSK-DGVVFHYGFIENSN 88

Query: 562 ---RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     + L +D   R+  S  HSA HLL   + T+   ++        PDG  
Sbjct: 89  EELESKLEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLGNLEPGKGYHFPDGPF 148

Query: 619 FDVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +     P    +   K +E + N +I++   V   ++   +A+      L    Y  + 
Sbjct: 149 VEYKGVVPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVELCGGCL--PDYIPKS 206

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
              +      G +    CGGTHVS   EI+ + +  +   + G+ ++    G
Sbjct: 207 --SNPRILKLGDNPGCPCGGTHVSDISEIISVKVT-QIRTKKGVTKVYYTIG 255


>gi|297736873|emb|CBI26074.3| unnamed protein product [Vitis vinifera]
          Length = 243

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 16/232 (6%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKKAEGIFVHHAIVE--- 561
              +  ++ D T F+ + GGQ  DTG        I+  + DV+ K +G+  H+  +E   
Sbjct: 17  DDGRRALILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRSK-DGVVFHYGFIENSN 75

Query: 562 ---RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
                 L     + L +D   R+  S  HSA HLL   + T+   ++        PDG  
Sbjct: 76  EELESKLEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLGNLEPGKGYHFPDGPF 135

Query: 619 FDVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
            +     P    +   K +E + N +I++   V   ++   +A+      L    Y  + 
Sbjct: 136 VEYKGVVPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVELCGGCL--PDYIPKS 193

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
              +      G +    CGGTHVS   EI+ + +  +   + G+ ++    G
Sbjct: 194 --SNPRILKLGDNPGCPCGGTHVSDISEIISVKVT-QIRTKKGVTKVYYTIG 242


>gi|331695255|ref|YP_004331494.1| Threonyl/alanyl tRNA synthetase SAD [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949944|gb|AEA23641.1| Threonyl/alanyl tRNA synthetase SAD [Pseudonocardia dioxanivorans
           CB1190]
          Length = 247

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 19/234 (8%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           V+       AV  ++  +V D++ FY   GGQ  D G  +  G+R +I    +   G  +
Sbjct: 22  VRDFTATVVAVDPERG-IVLDRSAFYPGGGGQPPDEGVLLWGGVRTRIVGTVR---GDDL 77

Query: 556 HHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +    E   +  T  ++   ID + R  L   HS  H+L   +    G+ V+  G  + P
Sbjct: 78  YLVPAEGDPVPATGTAVRGAIDDERRTGLMRTHSGLHVLTAVVFRDFGAKVT--GGNMEP 135

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLG 669
              R D    + +       + +  N  IA + P+  R++ R +A A       AA LL 
Sbjct: 136 LTARMDFDLPQ-VPPDFKDRVAEAANAEIALDRPIAARLLPRAEAFAIPNLVRTAADLLP 194

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               + +RVV ++  D         GGTHV+ST  I  + +V   +   G RR+
Sbjct: 195 EDL-ETIRVVDIDGLD-----QQADGGTHVASTKLIGRVEVVKVENKGRGFRRL 242


>gi|170290346|ref|YP_001737162.1| threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174426|gb|ACB07479.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 247

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 14/218 (6%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G    VV D + F+   GGQ  D G   G+G   ++  V + ++ + V +  + RG L
Sbjct: 36  EKGSYYYVVPDSSIFHPLGGGQPSDQGWIRGEGFEAEVRKVLE-SDDVIVIYCKLIRGDL 94

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             E      +D++ R  +   H+A H++  AL+ ++G  V   G+   P   R  V +  
Sbjct: 95  EGEAE--QELDWEKRYLVMRLHTAGHVIDRALADLMG-RVETLGAFHGP--PRAYVDYRA 149

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEY 683
            I  + L  IE   N++      V+ R +  ED      GA  L      +R R+V ++ 
Sbjct: 150 SIDESLLPEIERGANEL-LGEREVIVREVAPEDLEKVIYGAPNLGRLPRAERYRIVEIKG 208

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +        C GTHV +  E+  + I     +  G R
Sbjct: 209 VNA-----MPCTGTHVRNAAEVGRISITGIERVEGGTR 241


>gi|326469102|gb|EGD93111.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818]
          Length = 265

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 14/239 (5%)

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA- 550
            A+ +  + + +  S +   VV ++T F+ + GGQ  D G      G    +  V+  A 
Sbjct: 28  AALEEANQQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSSTGSSFTVASVRMDAL 87

Query: 551 -EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V    
Sbjct: 88  QDGQVLHLGRFGSSTFAPGETVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFE 147

Query: 610 SCITPDGLRFDVTHSKPITSAELK-SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                          + +   + K SI+D VN+ IA+ +PV     + +D  + G   L+
Sbjct: 148 ELKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAEAMPVEIEWWDEDDFRSRGLERLI 207

Query: 669 GT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    ++ RVV++   +        CGGTHV +T       +   S    G  R+
Sbjct: 208 PDPTLVPPGEKSRVVNIVGAE-----VYPCGGTHVDTTDLCGHTTVKKISR-SKGTSRV 260


>gi|34499208|ref|NP_903423.1| alanyl-tRNA synthetase-like protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105059|gb|AAQ61415.1| probable alanyl-tRNA synthetase related protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 235

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 17/220 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
               ++ + T  Y   GGQ GD+    + D   L+I D ++  E   + H       L  
Sbjct: 22  DDAGLILEDTLCYPLGGGQPGDSAALTLADRSALRIADTRRDRETRAILHQTAGDARLAP 81

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + L +D+  R +    H+  HLL   +           G  +T +  R D    + +
Sbjct: 82  GTEVTLELDWDRRYRHMRIHTCLHLLGVVVK------AGVTGGNMTAESGRLDFALPEGM 135

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEY 683
              + ++IE  +N ++  +LP+  RI + E   A        ++    +   +R++ +E 
Sbjct: 136 -ELDKENIEAELNRLVDADLPLAVRITSGEALKAQPELIRTMSVTPPLHLPEIRLIEIEG 194

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            D        CGGTHV+ TGE+  + +    S  A  +R+
Sbjct: 195 VDL-----QPCGGTHVARTGEVGRVRVKKIESKGARNKRV 229


>gi|167950028|ref|ZP_02537102.1| Phosphoserine aminotransferase, Methanosarcina type [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 91

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 56/78 (71%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           MV FK+ F G++K  Y    + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF
Sbjct: 1   MVQFKDAFLGRDKRSYLRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60

Query: 103 KERAIQLAWDLLTKEFDL 120
           K  AI  AW+ LT+    
Sbjct: 61  KREAINYAWEFLTRTAGA 78


>gi|187920789|ref|YP_001889821.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phytofirmans
           PsJN]
 gi|187719227|gb|ACD20450.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia phytofirmans
           PsJN]
          Length = 237

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 5/224 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +     ++ +   VV  ++  +   GGQ+ D          ++IT V   AEG  + H  
Sbjct: 14  DFETAVIAARPGAVVLGRSALHPGGGGQVSDAATLTHAQGAVRITGVA--AEGDVLWH-- 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +    L  + ++ + ID   R  ++  H+ TH+L+  +       +            R 
Sbjct: 70  LLDAPLELDGNVHVAIDAARRAAVAQLHTVTHILNALVYQRFAGALVTGAQINADGTARM 129

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    +    A L+ +E+ VN++I   + V T  +  ++A A+       +         
Sbjct: 130 DFDLPEADNDA-LRLLEEPVNEVIRSAMEVRTYYVGTDEAKATQGLIRSLSVAPPPTPDG 188

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +V   + G      CGGTH+++T +   + I    +     RR+
Sbjct: 189 TVRIVEIGDLDRQACGGTHLTNTAQSRPIRIAKIENKGRRNRRV 232


>gi|289621971|emb|CBI51149.1| unnamed protein product [Sordaria macrospora]
          Length = 510

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 114/297 (38%), Gaps = 25/297 (8%)

Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
           T+ +   +K   G+T    Y     +  + +   V+    P       +   K + ++G+
Sbjct: 220 TKALALEMKPVRGSTAARTYLAFHHNAKLYKLSTVVSAIKPFSALEEAN---KLLFKKGK 276

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKA--EGIFVHH 557
             E   S  +  +V ++T F+ + GGQ  D G     +    +++ V+  A  +G  +H 
Sbjct: 277 DDESKSSDDEFAIVAEKTIFHPQGGGQPSDEGVMTKCNDSVFRVSMVRMDAVNDGQVLHF 336

Query: 558 AIVER----GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV---SQNGS 610
              +        +   ++  +ID   R   S  H+A H+L  A+  +L   +    +  +
Sbjct: 337 GRFDSSSSANKFQVGDTIEQSIDIDKRLLYSRLHTAGHVLGAAVRHLLEKEIPGFDELKA 396

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
              PD    +   S      E   I+  V++ I + +PV     + ED   +G   L+  
Sbjct: 397 SHFPDIAGCEFQGSIEGKWKEP--IQQKVDEYIDKAMPVEVDFWDEEDFRKNGLERLIPD 454

Query: 671 K----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +      ++ RVV +   +        CGGTHV +T       +   S    G  R+
Sbjct: 455 RSLAPPGEKFRVVKIAGAE-----VYPCGGTHVDTTDLCGKTTVKKISR-SKGTSRV 505


>gi|161598611|ref|YP_001573826.1| tRNA synthetase-related protein [Bacillus thuringiensis serovar
           israelensis]
 gi|21685478|emb|CAD30140.1| tRNA synthetase-related protein [Bacillus thuringiensis serovar
           israelensis]
          Length = 235

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 43/231 (18%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH------------ 556
           +  ++  +QT FY E GGQ+GD G   G+    ++ D QK    +F H            
Sbjct: 23  EDNKIFLNQTVFYPEGGGQIGDQGWIEGN----EVIDTQKTGGNLFYHSNFPIIKVGSEV 78

Query: 557 -HAIVER-GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            H + E    LR  M +   I+++ R  L   H+A HL+++    + G  +   G  I  
Sbjct: 79  AHILKEPVKGLREGMEVKAKINWERRHMLMRMHAAAHLVYYYTFQVFGE-MYVKGCHIAE 137

Query: 615 DGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
           D  RFD  +  K +    L  +E+  N I+  N+P+    +N E                
Sbjct: 138 DRARFDFYSPDKRLDREGLDKVEEFANLIVTDNIPIKNIPLNEE---------------- 181

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                 ++ +  G +H    CGGTHV  TG+I  + +   S     + R+ 
Sbjct: 182 ----PEAINWICGDMHI--PCGGTHVRQTGDIGEISVRRNSR-GKNLERMY 225


>gi|167839951|ref|ZP_02466635.1| threonyl and alanyl tRNA synthetase domain protein [Burkholderia
           thailandensis MSMB43]
          Length = 239

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 7/220 (3%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            V  +   V   Q PFY   GGQL D G    +G    +T   +   G+++    +  G+
Sbjct: 19  VVDTRPGAVRLSQHPFYPGGGGQLPDLGTVQWEGGVETVTGFSEDEGGLWI---ELANGV 75

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG-LRFDVTH 623
                 +  ++D   RR +   H+  H+L+  +       +   G  +  D   R D   
Sbjct: 76  EIVG-HVQSSVDAAFRRSMRELHTDLHVLNALVYRDFDGALV-TGVQMNADRTARIDFDL 133

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L+++E  +ND++ ++LPV TR +   DA          +          V  
Sbjct: 134 PDADN-DRLRALEAELNDVVHRDLPVRTRYVPLADAQQESGLLRSRSVAPPPTADGLVRI 192

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +     S  CGGTH++STG    + I+   +     RR+
Sbjct: 193 VEIDGLDSQACGGTHLASTGGSSPVRILKIENKGRSNRRV 232


>gi|297701048|ref|XP_002827539.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like, partial [Pongo
           abelii]
          Length = 307

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 122/317 (38%), Gaps = 27/317 (8%)

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLP 648
            HL+      +     +           R  +    P +T+ ++ +IE +VN+ I   LP
Sbjct: 1   QHLITAVADHLFKLKTTSW----ELGRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLP 56

Query: 649 VVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           V  R ++ +D          L   +   +RVVS++  D     S +C GTHVS+  ++ +
Sbjct: 57  VNVRELSLDDPEVEQVRGRGLPDDHAGPIRVVSIKGVD-----SNMCCGTHVSNLSDLQV 111

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           + I+     +     +  + G R    +       K+L + LK    + V  V+++    
Sbjct: 112 IKILGTEKGKKNKTNLIFLAGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKKLQNST 171

Query: 768 RKLQL--------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           + LQ         ++  R L +++     +       +     E DS+ +  + + +  +
Sbjct: 172 KILQKLPYPFQNNLNLLRDLAVHIARRLRNSPDWGGVVVLHRKEGDSEFMNIIANEIGSE 231

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
                ++ + +  EK A + ++         +   L    A+VL G G G +    Q   
Sbjct: 232 ET---LLFLTVGDEKGAGLFLLAGPPA----SVETLGPRVAEVLEGKGAGKKGRF-QGKA 283

Query: 880 PNGNKADQAIAGVASFL 896
              ++  +A A +  ++
Sbjct: 284 TKMSRRMEAQALLQDYI 300


>gi|239933643|ref|ZP_04690596.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 252

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 7/174 (4%)

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           R M   +A   GA AL    Y ++VRVV +    GG  S  LCGGTHV    +I  + + 
Sbjct: 2   RWMTLPEAKELGALALFDETYGEKVRVVEI----GGAWSRELCGGTHVEHASQIGTVVLT 57

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           SESS+ AG+ R+EA  G     +L  + + +  +A  L+  +  +   +  + +  +   
Sbjct: 58  SESSVGAGMCRLEAAVGIEGFGYLARERDPVTRIAEQLQAPRAELPYHIAGLPDRLKSAD 117

Query: 772 LIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             + + + Q              DV+    + +  D    +++  A++ ++ + 
Sbjct: 118 RENQRIREQADRARASDLAADATDVDGTPVVTATTDGDA-QALAIAVRDRLPAA 170


>gi|332110535|gb|EGJ10858.1| Threonyl/alanyl tRNA synthetase SAD [Rubrivivax benzoatilyticus
           JA2]
          Length = 242

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 23/222 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAE--GIFVHHAI--VERGIL 565
             +V D+T FY + GGQ GD G  +  DG R+ I D +K  E  G+ VH A    +   L
Sbjct: 28  GGIVLDRTVFYPQGGGQAGDAGELLATDGRRVAIADTRKHPEHPGVVVHRAAEGADLSWL 87

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
               ++   ID   R+     HSATHLL   +          +G  IT    R D   ++
Sbjct: 88  APGTAVRAAIDVARRQAHRRFHSATHLLCALVPQ------PVDGCSITAGYARLDFHMTE 141

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSV 681
           P+    L +    +  ++A+  PV TR ++ ++  A+       ++   +   RVR+V +
Sbjct: 142 PLDKDLLGA---GLARLVAEARPVHTRWISEDELDANPQLVRSMSVQPPRGQGRVRLVEI 198

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           E  D        CGGTHV++T EI  + +       A  RR+
Sbjct: 199 EGLDL-----QPCGGTHVANTAEIGAVVVTKIEKKSAKTRRV 235


>gi|1814431|gb|AAB99528.1| alanyl-tRNA synthetase [Sulfolobus solfataricus]
          Length = 174

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 3   NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61
            V   R  FL FF+K GH  +P   ++      L  T + +V F+   T G   P    +
Sbjct: 61  TVKEAREKFLSFFEKRGHTRIPPKPVLARWREDLYLTIASIVDFQPHVTSGLVPPPANPL 120

Query: 62  TTVQKCVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGG-----YFKERAIQLAWDL 113
              Q  +R      D+DNVG T  RH T FEM  + +F       Y+K+     A + 
Sbjct: 121 VVSQPSIRL----EDIDNVGVTFGRHLTTFEMAAHHAFNYPDRYVYWKDETTAYATEF 174


>gi|296242714|ref|YP_003650201.1| threonyl/alanyl tRNA synthetase SAD [Thermosphaera aggregans DSM
           11486]
 gi|296095298|gb|ADG91249.1| Threonyl/alanyl tRNA synthetase SAD [Thermosphaera aggregans DSM
           11486]
          Length = 254

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 11/213 (5%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT-E 568
           K  +VFD+T F+ + GGQ  DTG   G+    ++         +  H+  V  G L    
Sbjct: 41  KCYLVFDKTIFHPKTGGQGSDTGWVRGESFEFRVEKAL-MVGNVVAHYGRVVGGELPVKG 99

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + L +D++ R +    H+A H+L +A+  +   HV+   +  +P     +        
Sbjct: 100 SPVTLELDWEPRYRAMRLHTAGHILDYAVMRVYEGHVNTLEARHSPPDAYIEYEVKHASE 159

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAALLGTKYNDRVRVVSVEYEDG 686
               + I      I+ +   V    ++ E+       A  L       + R+V +E  + 
Sbjct: 160 KI-AEEILREAARIVEEARKVRAFWVSWEELSTKIYNAPNLQRLPRTSKYRIVEIEGVNA 218

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVS-ESSIRA 718
                  C GTHVS+T E+  + +V  E ++R 
Sbjct: 219 -----IPCTGTHVSNTREVGRVELVRLEETVRG 246


>gi|317155876|ref|XP_001825428.2| alanyl-tRNA synthetase [Aspergillus oryzae RIB40]
          Length = 299

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 20/277 (7%)

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI--VKAIVQQGEIVEEAVSGQKVE 512
           TQ      L  S     D   L      + T  V S   +  + +  + + + V+ +   
Sbjct: 21  TQNTNNPSLESS-LDTTDLLYLNDASLREWTTTVLSCQPISQLTENEKSLAKTVAPESFA 79

Query: 513 VVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIV-ERGILRT 567
           +   +T FY + GGQ  DTG        +G   ++  V+K  +G  +H     ++     
Sbjct: 80  LTTRETVFYPQGGGQPSDTGVITLADKSNGSTFKVLLVRKTLDGTVLHLGEFTDQPCFTD 139

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG--SHVSQNGSCITPDGLRFDVTHSK 625
              +   ID+  R   S  H+A H++  A+  +        +  +   P     +     
Sbjct: 140 GQLVSQAIDWAKRDYHSRLHTAGHIIGLAMRLLAPVLGERKKVKANHAPGQACMEFE--G 197

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEY 683
            + +     IED VN+++   LPV T   + +    +    + G +     + R+  +  
Sbjct: 198 LLYTEHKSVIEDKVNELVGMKLPVTTEWWDEDRIQNADLNMVEGLQLGKNGQARIAMI-- 255

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
              G   +  CGGTHV  TG    + I   +  + G+
Sbjct: 256 ---GDIDANPCGGTHVEHTGLTGFITIRKIAR-QKGV 288


>gi|296161665|ref|ZP_06844469.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia sp. Ch1-1]
 gi|295888142|gb|EFG67956.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia sp. Ch1-1]
          Length = 237

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 5/224 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +     ++ +   VV  ++  +   GGQ+ D          ++IT V   AEG  + H +
Sbjct: 14  DFETAVIAARPGAVVLGRSALHPGGGGQVSDAATLTHAHGAVRITGV--AAEGDVLWHLL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E   L     + + ID   R  ++  H+ATH+L+  +       +            R 
Sbjct: 72  DEPLELSGN--VQVAIDAARRATVAQLHTATHILNALVYQRFAGALVTGAQINADGTARM 129

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D         A L+ +E+  N++I   + V    ++  +A A+       +         
Sbjct: 130 DFDLPDADNDA-LRLLEEPANEVIRNAMEVRVYYVSAAEAKATQGLIRSLSVAPPPTPDG 188

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +V   + G      CGGTH+++T +   + I    +     RR+
Sbjct: 189 TVRIVEIGDLDRQACGGTHLTNTAQSRPIRIAKIENKGRRNRRV 232


>gi|83774170|dbj|BAE64295.1| unnamed protein product [Aspergillus oryzae]
          Length = 270

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 93/238 (39%), Gaps = 17/238 (7%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQ 547
           +  + +  + + + V+ +   +   +T FY + GGQ  DTG        +G   ++  V+
Sbjct: 30  ISQLTENEKSLAKTVAPESFALTTRETVFYPQGGGQPSDTGVITLADKSNGSTFKVLLVR 89

Query: 548 KKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG--SH 604
           K  +G  +H     ++        +   ID+  R   S  H+A H++  A+  +      
Sbjct: 90  KTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTAGHIIGLAMRLLAPVLGE 149

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             +  +   P     +      + +     IED VN+++   LPV T   + +    +  
Sbjct: 150 RKKVKANHAPGQACMEFE--GLLYTEHKSVIEDKVNELVGMKLPVTTEWWDEDRIQNADL 207

Query: 665 AALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             + G +     + R+  +     G   +  CGGTHV  TG    + I   +  + G+
Sbjct: 208 NMVEGLQLGKNGQARIAMI-----GDIDANPCGGTHVEHTGLTGFITIRKIAR-QKGV 259


>gi|255942495|ref|XP_002562016.1| Pc18g01720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586749|emb|CAP94396.1| Pc18g01720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 264

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 101/236 (42%), Gaps = 13/236 (5%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGDGIRLQITDVQKK 549
           + ++ ++ + + + V  +   +   QT FYA+ GGQ  DTG    +      +++ V+K 
Sbjct: 28  ITSLSEEEKGLAKNVPAEDNAITMRQTIFYAQGGGQPSDTGAIGPVDQDPTFEVSAVRKT 87

Query: 550 AEGIFVHHAIVERGI--LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
            +G F+H               S+V  +D   R   S  H+A H++  A+  ++      
Sbjct: 88  PDGRFLHFGKFLDATSSFVVGQSVVQKVDDSKRNYHSRLHTAGHIVGLAMQLLMPEKKKV 147

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
             +    +     + +   + +     I++ V++++  +LP++   +     +  G  A 
Sbjct: 148 KANHFPRE---ASMEYEGLLYNEHKPVIQEKVDELVRLDLPILISWLQGGALVGDGEGAE 204

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            G  ++ R R+ S+   D        CGGTHV+ T  +  + I   S  + GI R+
Sbjct: 205 EGRSHDGRTRIASIGGLDHN-----PCGGTHVARTSLVGSVVIRKISR-QKGISRV 254


>gi|91777811|ref|YP_553019.1| metal-dependent hydrolases related to alanyl-tRNA synthetase
           [Burkholderia xenovorans LB400]
 gi|91690471|gb|ABE33669.1| Ala-tRNA(Pro) hydrolase [Burkholderia xenovorans LB400]
          Length = 237

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 5/224 (2%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +     ++ +   VV  ++  +   GGQ+ D          ++IT V   AEG  + H +
Sbjct: 14  DFETAVIAARPGAVVLGRSALHPGGGGQVSDAATLTHAHGAVRITGVA--AEGDVLWHLL 71

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            E   L    ++ + ID   R  ++  H+ATH+L+  +       +            R 
Sbjct: 72  DE--PLELAGNVHVAIDAARRATVAQLHTATHILNALVYQRFAGALVTGAQINADGTARM 129

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D         A L+ +E+  N++I   + V    ++  +A A+       +         
Sbjct: 130 DFDLPDADNDA-LRLLEEPANEVIRNAMEVRVYYVSAAEAKATQGLIRSLSVAPPPTPDG 188

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +V   + G      CGGTH+++T +   + I    +     RR+
Sbjct: 189 TVRIVEIGDLDRQACGGTHLTNTAQSRPIRIAKIENKGRRNRRV 232


>gi|46126749|ref|XP_387928.1| hypothetical protein FG07752.1 [Gibberella zeae PH-1]
          Length = 245

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 9/222 (4%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVE 561
           +  S     V+ D T FYA+ GGQ  DTG      +     +T VQK   G  VH     
Sbjct: 26  KVASDDSFLVITDSTIFYAKGGGQPSDTGTMSFPDEASTFTVTSVQKLPSGTIVHLGTYS 85

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
                 +  ++  ID   R+  S  H A H+L  A+  +    + +  +   P     D 
Sbjct: 86  GSPFEEQKMVIQKIDKDTRKLHSQIHDAGHILSSAIRRLGIPELREIKAQHYPGTAFVDF 145

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                I S   + +E   N+I+  +  +  R  +R++               D + V +V
Sbjct: 146 --HGIIQSDRKEDLERMANEIVQGDRSIDVRWWSRDELKEKSWTMPEDDGSRDDL-VRAV 202

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           E E  G +   +CGGTH+ ST  +  + +      + G+ R+
Sbjct: 203 EIEGEGAY---MCGGTHMRSTALVGKIRVRKIKR-QQGVTRV 240


>gi|254167770|ref|ZP_04874620.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289597105|ref|YP_003483801.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
 gi|197623298|gb|EDY35863.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|289534892|gb|ADD09239.1| Threonyl/alanyl tRNA synthetase SAD [Aciduliprofundum boonei T469]
          Length = 387

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 134/391 (34%), Gaps = 36/391 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E    +  + +   T  Y   GGQ  D G AI +G    I     K  G   H      G
Sbjct: 15  EVEERKGNKCLLSDTILYPGGGGQPPDEGIAICNGEEFSI-----KHIGSLWHEI---DG 66

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           I +    + + +++  R  L  +H+A H     L              ++    + D++ 
Sbjct: 67  ICKC-DKMKIILNWDRRYLLMRSHTAEHTFFRFLENKGAKMGKIALGEVSSIIFQGDIS- 124

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RVVSVE 682
                + ++   E    ++I +   V T  +N+++        +   +  D   RVV +E
Sbjct: 125 -----AEDILDAEKRTRELIKEGRNVSTFWINKDEIRNYPDLRIKLERIKDEKIRVVKIE 179

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLMGQDEK 741
             D        C G H+S+  EI    IV     R G R+ ++ + G+ AR++     + 
Sbjct: 180 GHDLS-----ACKGVHISNLSEIEDFAIV---HFRMGKRKEVKFVIGEMARNYHYRASQS 231

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L+ L     +    +   +E +  E    +++    +        +  K  ++      +
Sbjct: 232 LRKLMWKRNLDMDKIENYLENLENEN---EIMRKALRDASKDAKFNVEKCGEIELHYLFL 288

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
              + K ++     +     +  +++ GI +     +    +           L      
Sbjct: 289 PYAEKKIIQRKALEIAN--HNKAVVVYGIGESNVVCIAYNPSYPWARNEYMGLL------ 340

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +  G GGG+ +       +  K  + +  +
Sbjct: 341 SMMNGRGGGKGNFVSGSVEDAKKFVEELKKI 371


>gi|302348165|ref|YP_003815803.1| Threonyl/alanyl tRNA synthetase, SAD [Acidilobus saccharovorans
           345-15]
 gi|302328577|gb|ADL18772.1| Threonyl/alanyl tRNA synthetase, SAD [Acidilobus saccharovorans
           345-15]
          Length = 248

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 492 VKAIVQQGEIVEEAVS----GQKVEVVFDQTPFYAE-AGGQLGDTGCAI-GDGIRLQITD 545
           V+ + Q+   V+E  +      + ++  D T F+   +GG   DTG  +   G  +++ +
Sbjct: 2   VRLLYQEDSYVKEFEATVTRVDQNKIYLDATAFHPGPSGGLDADTGLLVLPSGSTVRVVN 61

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V +  +G  V H       L     +   +D++ R  +   H+A+H+L   L    G+ +
Sbjct: 62  VIE--DGDDVAHITEAPVQLSPGDKVKGVLDWERRYSMMRLHTASHVLAAVLYNKYGAKI 119

Query: 606 SQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +  G  I PD  + D   S        + +  D  N+++++ + V    + R+ A+    
Sbjct: 120 T--GGHIKPDEAQDDFDLSGVENWRQAILTAVDEANNVLSRCIDVKVYWLERDRALQIPG 177

Query: 665 AALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              L  +     D++R+V +   D         G  HV +T E+  + +VS  +     +
Sbjct: 178 IVKLAGRLPPAVDKLRIVEIPGVD-----IQADGAPHVKNTCEVGHIEVVSVENRGKTRK 232

Query: 722 RIEA 725
           R+  
Sbjct: 233 RVYY 236


>gi|302557376|ref|ZP_07309718.1| alanine-tRNA ligase [Streptomyces griseoflavus Tu4000]
 gi|302474994|gb|EFL38087.1| alanine-tRNA ligase [Streptomyces griseoflavus Tu4000]
          Length = 132

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 4   VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63
            + IR  FL+FF + GH  +PS+ L    DPTL+F N+GMVPFK   TG+    +    +
Sbjct: 49  TAEIRRRFLDFFAERGHTAVPSAPL-CSPDPTLLFVNAGMVPFKPYLTGEASTPWPRAAS 107

Query: 64  VQKCVRAGGKHNDLDNVGRTNRHHTF 89
           VQKCVR      D++ VGRT RH +F
Sbjct: 108 VQKCVRT----LDIEEVGRTTRHASF 129


>gi|326480566|gb|EGE04576.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 278

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 13/234 (5%)

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA- 550
            A+ +  + + +  S +   VV ++T F+ + GGQ  D G      G    +  V+  A 
Sbjct: 28  AALEEANQQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGMITSSTGSSFTVASVRMDAL 87

Query: 551 -EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V    
Sbjct: 88  QDGQVLHLGRFGSSTFAPGETVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKDVEGFE 147

Query: 610 SCITPDGLRFDVTHSKPITSAELK-SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                          + +   + K SI+D VN+ IA+ +PV     + +D  + G   L+
Sbjct: 148 ELKASHFPDSAACEFRGLIEGKWKPSIQDKVNEFIAEAMPVEIEWWDEDDFRSRGLERLI 207

Query: 669 GT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                    ++ RVV++   +        CGGTHV +T       +   S  + 
Sbjct: 208 PDPTLVPPGEKSRVVNIVGAE-----VYPCGGTHVDTTDLCGQTTVKKISRSKG 256


>gi|254167237|ref|ZP_04874090.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
 gi|197624093|gb|EDY36655.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Aciduliprofundum boonei T469]
          Length = 387

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 134/391 (34%), Gaps = 36/391 (9%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E    +  + +   T  Y   GGQ  D G AI +G    I     K  G   H      G
Sbjct: 15  EVEERKGNKCLLSDTILYPGGGGQPLDEGIAICNGEEFSI-----KHIGSLWHEI---DG 66

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           I +    + + +++  R  L  +H+A H     L              ++    + D+T 
Sbjct: 67  ICKC-DKMKIILNWDRRYLLMRSHTAEHTFFRFLENKGAKMGKIALGEVSSIIFQGDIT- 124

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RVVSVE 682
                + ++   E    ++I +   V T  +N+++        +   +  D   RVV +E
Sbjct: 125 -----TEDILDAEKRTRELIKEGRNVTTFWINKDEIRNYPDLRIKLERIKDEKIRVVKIE 179

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLMGQDEK 741
             D        C G H+S+  EI    IV     R G R+ ++ + G+ AR++     + 
Sbjct: 180 GHDLS-----ACKGVHISNLSEIEDFAIV---HFRMGKRKEVKFVIGEMARNYHYRASQS 231

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L+ L     +    +   +E +  E    +++    +        +  K  ++      +
Sbjct: 232 LRKLMWKRNLDMDKIENYLENLENEN---EIMRKALRDASKDTKFNVEKCGEIELHYLFL 288

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861
              + K ++     +     +  +++ GI +     +    +           L      
Sbjct: 289 PYAEKKIIQRKALEIAN--HNKAVVVYGIGESNVVCIAYNPSYPWARNEYMGLL------ 340

Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
            +  G GGG+ +       +  K  + +  +
Sbjct: 341 SMMNGRGGGKGNFVSGSVEDAKKFVEELKKI 371


>gi|56067693|gb|AAV70314.1| alanyl-tRNA synthetase [Anopheles gambiae]
 gi|56067695|gb|AAV70315.1| alanyl-tRNA synthetase [Anopheles gambiae]
          Length = 144

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           F    +          +    +  + A+      VEE  +GQ+  V+ D+T FYAE+GGQ
Sbjct: 1   FKYRYKAESIDPLAQYVFEPCTGKIVALRFNNAFVEEVQAGQECGVILDRTNFYAESGGQ 60

Query: 528 LGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           + D G  +    +     ++ V     G  +H  +VE G LR    +   +D   R+   
Sbjct: 61  IYDQGFLVKVNDESSEFNVSLV-YNRGGYVLHIGVVE-GTLRVGDEVHCHMDVVRRQLTM 118

Query: 585 INHSATHLLHHALSTILGSHVSQNGS 610
            NHSATH L+H+L  +LG    Q GS
Sbjct: 119 KNHSATHALNHSLLKVLGQDTDQRGS 144


>gi|284992198|ref|YP_003410752.1| Threonyl/alanyl tRNA synthetase SAD [Geodermatophilus obscurus DSM
           43160]
 gi|284065443|gb|ADB76381.1| Threonyl/alanyl tRNA synthetase SAD [Geodermatophilus obscurus DSM
           43160]
          Length = 246

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 18/225 (8%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             +  +  VV D++ FY   GGQ  D G  +  G+R +I   +K   G  ++   VE   
Sbjct: 29  VAADPEQGVVLDRSAFYPGGGGQPPDEGVLLWGGVRTRIAGTRK---GDELYLIPVEGDP 85

Query: 565 L-RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +     ++   +D + R  L   HS  H+L   +    G+ V+  G  + P   R D   
Sbjct: 86  VPPPGTAVRGALDDERRTALMRTHSGLHVLTGVVLRDFGAKVT--GGNMEPLTARMDFDL 143

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRV 678
           ++ + +     + + VN  IA +  +  R + R +A A       A  LL     + VR+
Sbjct: 144 AE-VPADFKDRVAEAVNAEIAADRRIEVRTLPRAEAYAIPDLIRTATDLLPPDI-EEVRI 201

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           V +   D         GGTHV+ST  +  + +V   +   G RR+
Sbjct: 202 VDIVGLDL-----QADGGTHVASTAMVGRVEVVKMENKGRGFRRL 241


>gi|108755195|emb|CAK32587.1| hypothetical protein 17H9-13 [uncultured organism]
          Length = 190

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 11/172 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVER 562
            V+  +  +  D+T FY + GGQ GDTG     G R+   +     +A G  VH A  + 
Sbjct: 19  VVAAGEGGIELDRTVFYPKGGGQPGDTGSLRAGGGRVVPIVDTYVDRATGRHVHVAGPDA 78

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             L    ++V  ID+Q R +L   H+  HLL   +      H    G  +     R D  
Sbjct: 79  PGLAAGDTVVAEIDWQRRHRLMRMHTCLHLLCAVV------HGPVTGGSVGEAKGRLDFD 132

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYN 673
             +     +   I   +N +I +N PV  T I + E A        +  K  
Sbjct: 133 LPETTLDKDH--ITAELNRLIEENHPVGATWITDDEMAAKPDLVRTMSVKPP 182


>gi|90018162|gb|ABD83894.1| alanyl-tRNA synthetase-like [Ictalurus punctatus]
          Length = 92

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--- 59
            + IR  F++FF++  HE + SSS IP +DPTL+F N+GM  FK IF     P +    
Sbjct: 6  TAAQIREKFIDFFRRYEHEYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65

Query: 60 --AVTTVQKCVRAGGKHNDLDNVGRT 83
                 QKC+RAGGK NDLD+VG+ 
Sbjct: 66 LKRAANTQKCIRAGGKRNDLDDVGKD 91


>gi|228905303|ref|ZP_04069285.1| TRNA synthetase-related protein [Bacillus thuringiensis IBL 4222]
 gi|228854340|gb|EEM99016.1| TRNA synthetase-related protein [Bacillus thuringiensis IBL 4222]
          Length = 207

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 43/225 (19%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH-------------HAIVE 561
            +QT FY E GGQ+GD G   G+    ++ D QK    +F H             H + E
Sbjct: 1   MNQTVFYPEGGGQIGDQGWIEGN----EVIDTQKTGGNLFYHSNFPIIKVGSEVAHILKE 56

Query: 562 R-GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
               LR  M +   I+++ R  L   H+A HL+++    + G  +   G  I  D  RFD
Sbjct: 57  PVKGLREGMEVKAKINWERRHMLMRMHAAAHLVYYYTFQVFGE-MYVKGCHIAEDRARFD 115

Query: 621 V-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
             +  K +    L  +E+  N I+  N+P+    +N E                      
Sbjct: 116 FYSPDKRLDREGLDKVEEFANLIVTDNIPIKNIPLNEE--------------------PE 155

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           ++ +  G +H    CGGTHV  TG+I  + +   S     + R+ 
Sbjct: 156 AINWICGDMHI--PCGGTHVRQTGDIGEISVRRNSR-GKNLERMY 197


>gi|324520304|gb|ADY47605.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 283

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 46/250 (18%)

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---DEKLKSLA 746
           +   CGGTH+ + G I  L I  E +I  G RRI A+TG  A   +      + ++++  
Sbjct: 34  AVEFCGGTHLHNVGHIGRLVISVEEAIAKGTRRIVALTGPEAVRAVQRADRIEARVRAAQ 93

Query: 747 SFLKVSQGNVVGR---------VEEIWEEYRKLQLIHAKR---------------KLQLN 782
            F+   +  V  R         V E+ EE  + QL + ++               KL+ +
Sbjct: 94  KFVANDRSIVTDRKRFKDANKMVNELIEEINQAQLPYWRKDEIREEAKGIQKLLDKLERD 153

Query: 783 VEDLSCHKIAD------------VNFMSHII-SEVDSKELKSVMDALQKKIQSGIIMLVG 829
            +     K+ +              F+ H+       K L + + +L+K   +  +M   
Sbjct: 154 AKAAVTEKVMNEAKQLEGTLNDHTKFIVHVFGKGATGKALDAALKSLKK---APAVMGFS 210

Query: 830 ISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +++E  K +++  V +  +     A +      +V+ GG GGG+   AQ+ G   ++  +
Sbjct: 211 VNEETGKVTIVAKVDKASVAAGLKAPEWISKVCEVV-GGRGGGKDMQAQATGDRIDRVPE 269

Query: 888 AIAGVASFLK 897
           A+     F K
Sbjct: 270 AVQLANDFAK 279


>gi|315049565|ref|XP_003174157.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311342124|gb|EFR01327.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 265

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 90/239 (37%), Gaps = 14/239 (5%)

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA- 550
            A+ +    + +  S +   VV ++T F+ + GGQ  D G      G    +  V+  A 
Sbjct: 28  AALEEANRQLFKQGSEEDHVVVTEKTIFHPQGGGQPSDIGTITSPSGSSFTVASVRTDAL 87

Query: 551 -EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
            +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V    
Sbjct: 88  QDGQVLHFGRFSSSPFAVGETVQQEIDVEKRLFYSRLHTAGHVLGAAVKHLVEKEVEGFN 147

Query: 610 SCITPDGLRFDVTHSKPITSAELK-SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
                          + +   + K SI+  V++ IA  +PV     + +D  + G   L+
Sbjct: 148 ELKASHFPDSAACEFQGLIEGKWKPSIQAKVDEFIAAAMPVEIEWWDEDDFRSRGLERLI 207

Query: 669 GT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    ++ RVV++   +        CGGTHV +T       +   S    G  R+
Sbjct: 208 PDPTLVPPGEKSRVVNIVGAE-----VYPCGGTHVDTTDLCGQTTVKKISR-SKGTSRV 260


>gi|302891482|ref|XP_003044623.1| hypothetical protein NECHADRAFT_98240 [Nectria haematococca mpVI
           77-13-4]
 gi|256725547|gb|EEU38910.1| hypothetical protein NECHADRAFT_98240 [Nectria haematococca mpVI
           77-13-4]
          Length = 262

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/227 (23%), Positives = 91/227 (40%), Gaps = 11/227 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHH 557
           + + +  S     +V   T FYA+ GGQ  DTG            +T VQK   G  +H 
Sbjct: 39  KKIFKGASDDGCLIVTSSTIFYAKGGGQPSDTGTMTSLDQTSTFTVTSVQKLPSGTIMHL 98

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                   + +M +   I+   R+  S  H A H+L  A+  +    + +  +   PD  
Sbjct: 99  GTYSGNPFQEKMLVAQKINKDARKLHSQIHDAGHILALAVRRLGIPDLREVKAQHYPDVA 158

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RV 676
             +      I   + + IE   N+I+  +  +  R  + E+  A   +  +     D   
Sbjct: 159 FVEF--QGIIGGDKKEEIERIANEIVGHDRSIAVRWWSPEELKAK--SWTMPEDIGDGND 214

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            + +VE E  G +   +CGGTHV ST  +  L +      + GI +I
Sbjct: 215 LIRAVEIEGEGAY---MCGGTHVKSTALVGKLKVRKIKR-QQGITKI 257


>gi|222479402|ref|YP_002565639.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452304|gb|ACM56569.1| Threonyl/alanyl tRNA synthetase SAD [Halorubrum lacusprofundi ATCC
           49239]
          Length = 293

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 95/261 (36%), Gaps = 52/261 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI----------------RLQITDVQKK------- 549
           VV DQT FY   GGQ  DTG                       R ++ DV+KK       
Sbjct: 27  VVLDQTHFYPTGGGQPHDTGTLRVADAEMADGDGVADGDDADRRWRVVDVEKKDTVYHTL 86

Query: 550 ------AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
                 A G     A      L     +V  ID   RR  S  H+A HLL   L  +   
Sbjct: 87  EPAGDGASGAGDDSATDTVAPLEPGTVVVGEIDAARRRAHSRYHTAQHLLSALL--LAEF 144

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-- 661
             S  G+ +  D    D  + +     +L  IE  +N+++A   PV +  MNRE+A A  
Sbjct: 145 DASTTGNQLYDDHAHLDAAY-ERFDDGDLVQIETRLNELVADERPVTSYTMNREEAEATL 203

Query: 662 ---SGAAALLGTKYNDRVRVVSVEYEDG--------------GVHSSALCGGTHVSSTGE 704
                   LL    ++ +R+V +    G                +    C GTHV++T E
Sbjct: 204 DTDRTRIDLLPDSISE-LRIVEIGAARGTDGNDGDDGDDGNKEPYDRTACAGTHVANTAE 262

Query: 705 IMLLYIVSESSIRAGIRRIEA 725
           I  + +    +  +   R+  
Sbjct: 263 IGPIVVTGRETKGSDEDRVRF 283


>gi|224107335|ref|XP_002314450.1| predicted protein [Populus trichocarpa]
 gi|222863490|gb|EEF00621.1| predicted protein [Populus trichocarpa]
          Length = 246

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 21/225 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERG 563
              +  ++ D T F+ + GGQL DTG          +  + DV+ K +GI  H+ ++E G
Sbjct: 30  EDGRNALILDSTIFHPQGGGQLADTGVITIAADSSFKFIVQDVRSK-DGIVYHYGVIEEG 88

Query: 564 ILR-------TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
             +           + L +D   R+  S  HSA HL+   L  +   H+        PDG
Sbjct: 89  SGKDFEMEVVRGGEVFLFVDEARRKLNSRLHSAGHLMDACLEEVGLGHLEPGKGYHFPDG 148

Query: 617 LRFDVTHSKPITSAELK--SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              +   + P    + K   +E   N +I++   V   ++  E+A       L      D
Sbjct: 149 PFVEYKGTIPQNELQSKQHELELAANALISRGGKVSAAVLPYEEAAELCGGFLPDYIPKD 208

Query: 675 -RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
              RVV +        S+  CGGTHVS   EI+ L  VS+   + 
Sbjct: 209 STPRVVKLGN------SAVCCGGTHVSDISEIISLQ-VSQIRKKK 246


>gi|238498766|ref|XP_002380618.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220693892|gb|EED50237.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 267

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 95/241 (39%), Gaps = 17/241 (7%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA----IGDGIRLQITDVQ 547
           +  + +  + + + V+ +   +   +T FY + GGQ  DTG        +G   ++  V+
Sbjct: 27  ISQLTESEKSLAKTVAPESFALATRETVFYPQGGGQPSDTGVITLADTSNGSTFKVLLVR 86

Query: 548 KKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG--SH 604
           K  +G  +H     ++        +   ID+  R   S  H+A H++  A+  +      
Sbjct: 87  KTLDGTVLHLGEFTDQPCFTDGQLVSQAIDWAKRDYHSRLHTAGHIIGLAMRLLAPVLGE 146

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             +  +   P     +      + +     IED VN+++   LPV T   + +    +  
Sbjct: 147 RKKVKANHAPGQACMEFE--GLLYTEHKSVIEDKVNELVGMKLPVTTEWWDEDRIHNADL 204

Query: 665 AALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             + G +     + R+  +     G   +  CGGTHV  TG    + I   +  + G+ +
Sbjct: 205 NMVEGLQLGKNGQARIAMI-----GDIDANPCGGTHVEHTGLTGFITIRKIAR-QKGVSK 258

Query: 723 I 723
           +
Sbjct: 259 L 259


>gi|296816921|ref|XP_002848797.1| threonyl/alanyl tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238839250|gb|EEQ28912.1| threonyl/alanyl tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 266

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 15/242 (6%)

Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQK 548
              ++ +    + +  S +   VV ++T F+ + GGQ  D G       G    +  V+ 
Sbjct: 26  TFTSLEEPNRQLFKQGSDEDHVVVTEETVFHPQGGGQPSDIGTITFSPSGSCFTVASVRM 85

Query: 549 KA--EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            A  +G  +H             ++   ID + R   S  H+A H+L  A+  ++   V 
Sbjct: 86  DALQDGQVLHFGRFNAAPFAVGDTVQQEIDVEKRLLYSRLHTAGHVLGAAVKHLVEKEVD 145

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                             + +   + K+ I++ V++ IA  +PV     + +D  + G  
Sbjct: 146 GFNELKASHFPDSAACEFQGLIEGKWKTPIQEKVDEFIAAGMPVEIEWWDEDDFRSRGLE 205

Query: 666 ALLGT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            L+         ++ RVV++   +        CGGTHV +T       +   S    G  
Sbjct: 206 RLIPDPSLVPPGEKSRVVNIVGAE-----VYPCGGTHVDTTDLCGQTTVKKVSR-SKGTS 259

Query: 722 RI 723
           R+
Sbjct: 260 RV 261


>gi|255523789|ref|ZP_05390754.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|255512492|gb|EET88767.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
          Length = 238

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 17/235 (7%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
            +++ E    +    +  V+ D+T FY   GGQ  D G    D  +  +  V+KK   ++
Sbjct: 11  YIKEFECKVISTDEAENAVILDKTAFYIGGGGQPCDVGVLKTDVNKYVVKKVKKKGNDVY 70

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            +   ++  +          ID+ +R +L   H+A H+L   +     + V+  G  +  
Sbjct: 71  HY---IDGKLPEVNEICTGKIDWDHRYKLMRTHTAMHILCGVVWRDYKAQVT--GGDMDC 125

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLG 669
              R D    +    A ++ IE+ VN  +     +   I+ RE+A+           LL 
Sbjct: 126 LKGRMDFE-FQNFDKALVEEIEEKVNKEVQCKRDIKVNILEREEALKIPDLIRTKINLLP 184

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                ++R V +E  D         GGTHV +T E+  + IV   S     +RI 
Sbjct: 185 EGIK-QIRTVEIEGLDL-----QADGGTHVKNTSEVGKIKIVDYKSKGKINKRIY 233


>gi|241709470|ref|XP_002403410.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215505070|gb|EEC14564.1| alanyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 104

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/78 (55%), Positives = 58/78 (74%)

Query: 59  QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118
           +     QKC+R GGKHNDL++VG+   HHTFFEMLGN+SFG YFK+ A  +AW+LLT+ +
Sbjct: 11  KRAANYQKCIRVGGKHNDLEDVGKDLNHHTFFEMLGNWSFGDYFKKEACAMAWELLTEVY 70

Query: 119 DLDQRRLYITVYDEDEEA 136
            L + RLY+T +  D+EA
Sbjct: 71  RLPKERLYVTYFAGDKEA 88


>gi|312870162|ref|ZP_07730296.1| threonine/alanine tRNA ligase second additional domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311094357|gb|EFQ52667.1| threonine/alanine tRNA ligase second additional domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 251

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 10/221 (4%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           VS  +  +  DQT  Y   GGQ  D    + +    Q+ ++++  E    +   ++R I+
Sbjct: 33  VSADRRWISLDQTIIYPGGGGQPADQAKLLINEEWYQVVEIRRGQEDGISY--KLDRPIV 90

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             + +  + ID+  R Q    H+  H++   L     + V+ +G       L  +     
Sbjct: 91  GDDQAAFIQIDWAFRYQNMRYHTLLHIISGYLYRKYHALVTSSGIMSDHARLEVEFQEDN 150

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG---TKYNDRVRVVSVE 682
             +  + + I  N+  +I  + PV T  ++R                 K    VR+V + 
Sbjct: 151 VPSEFDPELITQNIQQLIKDDFPVTTATIDRNTLNEEDLIRTYTNLIPKSITNVRLVKI- 209

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               G      C GTHV+STGE+     +   +     +RI
Sbjct: 210 ----GDFDEQACAGTHVASTGEVGNFKFIQLKNKGRLKKRI 246


>gi|213983237|ref|NP_001135512.1| alanyl-tRNA synthetase domain containing 1 [Xenopus (Silurana)
           tropicalis]
 gi|195539817|gb|AAI67931.1| Unknown (protein for MGC:135777) [Xenopus (Silurana) tropicalis]
          Length = 231

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 21/214 (9%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +  + E  +  VSG    ++   T  + E GGQ  D G        + +  V ++     
Sbjct: 26  LKVENEGKKSTVSG--FNILLKDTVLFPEGGGQPDDRGFI----HEVPVLRVTRQGPDAV 79

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                           +++ +D+  R      HS  HL+     ++ G   +        
Sbjct: 80  H----FVPSPFEPGAGVLVKVDWNRRFDHMQQHSGQHLVTAFADSLYGFKTTSW----EL 131

Query: 615 DGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL-LGTKY 672
              R  +    P +T  + ++IE  VN  I +++PV  R++  ++   +   +  L   +
Sbjct: 132 GRQRSVIELDTPLVTVQQAEAIEKTVNQKIREHVPVNVRLITVDNPEFNKVRSHGLPDDH 191

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
              VR++ +E  D       +C GTHV +  ++ 
Sbjct: 192 AGPVRIIDIEGVDAN-----MCCGTHVRNLSDLQ 220


>gi|115390396|ref|XP_001212703.1| hypothetical protein ATEG_03525 [Aspergillus terreus NIH2624]
 gi|114195099|gb|EAU36799.1| hypothetical protein ATEG_03525 [Aspergillus terreus NIH2624]
          Length = 303

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 26/189 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ TH+L+ AL  +LG  V Q GS + P+ LRFD +    +T  +++ ++      I 
Sbjct: 1   MNHTGTHILNFALREVLGKDVKQKGSLVAPEKLRFDFSFKASLTEKDIERVQQISYKYIQ 60

Query: 645 QNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSA 692
            +  V    +  E A    G  A+ G  Y D  RVVS+             +D   +S  
Sbjct: 61  DDQQVFVSDVALEKARQIEGVQAVSGETYPDPTRVVSIGVSVDTLVDNVSNKDWWNYSIE 120

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            CGGTHV +      + I+   ++    RR+E IT            E LK   + LKV 
Sbjct: 121 FCGGTHVQAELATTAVSILDRRALS---RRLEEIT-----------KEMLKEQKASLKVQ 166

Query: 753 QGNVVGRVE 761
               +  VE
Sbjct: 167 VDAALTLVE 175


>gi|85111753|ref|XP_964087.1| hypothetical protein NCU00535 [Neurospora crassa OR74A]
 gi|28925852|gb|EAA34851.1| hypothetical protein NCU00535 [Neurospora crassa OR74A]
          Length = 272

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 21/243 (8%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKA-- 550
           A+ +  +++ +  +     +V DQT F+ + GGQ  D G    GD    +++ V+  A  
Sbjct: 33  ALEETNKLLFKKGTDNDFAIVTDQTIFHPQGGGQPSDEGVMTMGDVSVFRVSMVRMDAVK 92

Query: 551 EGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV-- 605
           +G  +H    +     I +   ++  +ID + R   S  H+A H+L  A+  +L   +  
Sbjct: 93  DGQVLHFGRFDSSSSSIFQLGDTVEQSIDVEKRLLYSRLHTAGHVLGAAVRHLLEKEIPG 152

Query: 606 -SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             +  +   PD    +   S      E   I+  V++ I + +PV     + ED   +G 
Sbjct: 153 FDELKASHFPDSAACEFQGSIEGRWKEP--IQQKVDEYIDKAMPVEVDFWDEEDFRKNGL 210

Query: 665 AALLGTK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             L+  +      ++ RVV +   +        CGGTHV +T       +   S    G 
Sbjct: 211 ERLIPDRSLAPPGEKFRVVKIVGAE-----VYPCGGTHVDTTDLCGKTTVKKISR-SKGT 264

Query: 721 RRI 723
            R+
Sbjct: 265 SRV 267


>gi|242034369|ref|XP_002464579.1| hypothetical protein SORBIDRAFT_01g021216 [Sorghum bicolor]
 gi|242074962|ref|XP_002447417.1| hypothetical protein SORBIDRAFT_06g000746 [Sorghum bicolor]
 gi|242087319|ref|XP_002439492.1| hypothetical protein SORBIDRAFT_09g008037 [Sorghum bicolor]
 gi|241918433|gb|EER91577.1| hypothetical protein SORBIDRAFT_01g021216 [Sorghum bicolor]
 gi|241938600|gb|EES11745.1| hypothetical protein SORBIDRAFT_06g000746 [Sorghum bicolor]
 gi|241944777|gb|EES17922.1| hypothetical protein SORBIDRAFT_09g008037 [Sorghum bicolor]
          Length = 97

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 208 FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT------- 260
           F ++       LP   +DTGMG ER+ ++LQ K +NYD D+F  +  A  Q+        
Sbjct: 1   FNREADGSLRPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPY 60

Query: 261 ----GMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292
               G    G   + +RV+ DH+R+ SF IADG  P
Sbjct: 61  SGKVGSDDIGKVDMAYRVVADHIRTLSFAIADGAQP 96


>gi|302840929|ref|XP_002952010.1| hypothetical protein VOLCADRAFT_92618 [Volvox carteri f.
           nagariensis]
 gi|300262596|gb|EFJ46801.1| hypothetical protein VOLCADRAFT_92618 [Volvox carteri f.
           nagariensis]
          Length = 829

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 113/315 (35%), Gaps = 46/315 (14%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCA----IGDGIR-------LQITDVQKKAEGIFVHHA 558
           + EV   +TP + E+GGQ  D G        D          + +  V    EG   H  
Sbjct: 112 RYEVYLAETPMFPESGGQPCDIGQLFVVPSADQAVGVRSWPVVNVVAVM-WKEGALCH-- 168

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC-ITP--- 614
            +    L     + + +D+Q R      H+  H+       +LG+  +      + P   
Sbjct: 169 -LTDASLEPGTRVEVRLDWQRRYDHMQQHTGQHVFSAVADLLLGADTASWELHPLDPETH 227

Query: 615 ---DGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
              D     V  + P +++ +L  +E   N  +    PV   +++   A       +L  
Sbjct: 228 GSGDYGCVAVDLTVPQLSAEQLLELEARANAELRALRPVTPLVLDPRVAADMERMEVLQR 287

Query: 671 KY-------------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                            +VR+V VE  D        CGG    STGE+ +L +V     R
Sbjct: 288 DPTFRGQLPPADKIKGGKVRLVHVEGLDAN-----ACGGE--VSTGEVQVLKVVGAERTR 340

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            G  R+  + G RA + L G   +  +L + L          VE +  + R  +   A++
Sbjct: 341 -GHTRVRVMCGGRALAALAGCLTREAALTAKLTCPPWRHADMVELLLRDRR--EGAKARK 397

Query: 778 KLQLNVEDLSCHKIA 792
            L   + +    ++A
Sbjct: 398 LLAAELAERLGRELA 412


>gi|167585939|ref|ZP_02378327.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia ubonensis Bu]
          Length = 165

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 18/163 (11%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     +V  ID+  R +    H+A HL+   L          +G  +T D +R D   +
Sbjct: 12  LAPGARVVAEIDWARRYRHMRLHTAAHLMCAVLP------YPVDGCSVTADYVRLDFATA 65

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVS 680
           +PI   +   +E  + ++I    PV T  +  ++  A        ++       RVR++ 
Sbjct: 66  EPIDRDD---VERRLAELIGGAHPVTTEWITDDEMAARPELVRTMSVKPPMGLGRVRLLR 122

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           ++  D        CGGTHV +T EI  L +       A  RR+
Sbjct: 123 IDGVDL-----QPCGGTHVRNTSEIGGLRVAKLEKKSARTRRV 160


>gi|315425470|dbj|BAJ47133.1| threonyl/alanyl tRNA synthetase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 239

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 10/227 (4%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E   E V      VV D+T F+   GG + D G     G+  ++ +      G+      
Sbjct: 18  EFSAEVVEVSGDCVVLDRTVFHPRGGGLVSDVGFLRFGGVVSRVVEAFFTDGGVAH---R 74

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           +E G+ R    +   +D++ R ++   H+  H+L   +    G+ ++  G+ I+ DG R 
Sbjct: 75  LEGGVPRVGEVVEGVVDWEKRYRVMRMHTGLHVLAATMVEKTGALIT--GNNISYDGGRV 132

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRV 678
           D +  +      ++ +    N  +A++ PV    + RE  +++ G   L      D   +
Sbjct: 133 DFSL-EMFDRGVIEDVVQETNRRLAEDHPVKIYYLEREKVLSTPGLVKLANRLPPDVPVL 191

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             VE     V      GG HV +T E+  + +V   +     RR+  
Sbjct: 192 RIVEIVGLDV---QADGGPHVGNTVEVGRINVVKLENKGKTNRRLYF 235


>gi|53713916|ref|YP_099908.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|52216781|dbj|BAD49374.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46]
          Length = 230

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 7/183 (3%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           T V + ++ I VH    +    +  M     ++  N+++    H+A HLL+  +    G 
Sbjct: 52  TQVYRNSKRINVHQKYKKENNAQIIMEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGC 111

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             S+N + I     + D       T  ++ +IE+ VN+ I ++LPV    M  E+A +  
Sbjct: 112 PRSRN-AHIEKKKSKCDYELPTCPTEEQIHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIV 170

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             + L    ++ +R+V +     G + +  C G HV +T EI L  I+S      G  R+
Sbjct: 171 DLSKLPENASEILRIVRI-----GDYDACACIGQHVENTSEIGLFKIISYD-YADGKLRL 224

Query: 724 EAI 726
              
Sbjct: 225 RFK 227


>gi|288574772|ref|ZP_06393129.1| Threonyl/alanyl tRNA synthetase SAD [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570513|gb|EFC92070.1| Threonyl/alanyl tRNA synthetase SAD [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 397

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 102/273 (37%), Gaps = 12/273 (4%)

Query: 506 VSGQKVEVVFDQTPF-YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             G+K  V+ D   F + E GGQ GD+G    D     I + +K  +G+ V    ++ G 
Sbjct: 20  KKGKKASVLIDGDHFLHPEGGGQPGDSGVFSSDNCDGFILNTRKDEDGLCVLDLKLKSGE 79

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           LR    L +  D      LS  HS  H+L   +  +    +S     +  +     + + 
Sbjct: 80  LREGDLLKIERDDVRHSVLSRMHSGEHVLSRIMEDMRPG-LSVYKVAVGEERTGIYMRYD 138

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683
             +    L   ED    ++  +LPV T ++  E+A    G  A      +D +RVV +  
Sbjct: 139 GDLDWDFLFEAEDRARGVVRSSLPVETLVLPIEEAKRLDGLKARWDRVSDDSIRVVRIP- 197

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
                     C G+HV +T EI  L++ S          + ++   R   +       + 
Sbjct: 198 ----DFDLIACSGSHVENTSEIGTLFVESFKGSSPEWEVVFSLDSDRDVLYSREMRRLIS 253

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
                       V   ++ + EE   L+   AK
Sbjct: 254 RA----NCRYDEVGKIMDRLGEENGSLRKQLAK 282


>gi|315181416|gb|ADT88329.1| Threonyl/alanyl tRNA synthetase SAD [Vibrio furnissii NCTC 11218]
          Length = 212

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 30/216 (13%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +  +V  ++T FYAE+GGQ  DTG   G    + +   +K+  G  + + + +       
Sbjct: 23  EGDQVELEETIFYAESGGQESDTGTIAG----IAVLKAEKQ--GRTIRYTLEQTPAFSVG 76

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + + ID+  R QL   H A  L+         S+V + G+ I+ D  R D    + I 
Sbjct: 77  EEVWVKIDWPRRYQLMKLHFAAELVLELFYQ-RFSNVEKIGAHISQDKSRIDFYWPESIA 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
              L S+ +  N +IAQ+ P+++   +  +                  R   VE      
Sbjct: 136 PL-LPSVTEQANHLIAQDTPILSAFSDEAE----------------ERRYWQVEG----- 173

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +   CGGTH+ STGE+  +  +   +I  G  R+E
Sbjct: 174 FAKVPCGGTHLKSTGEVGPIR-LKRKNIGGGKERVE 208


>gi|260770348|ref|ZP_05879281.1| alanyl-tRNA synthetase domain protein [Vibrio furnissii CIP 102972]
 gi|260615686|gb|EEX40872.1| alanyl-tRNA synthetase domain protein [Vibrio furnissii CIP 102972]
          Length = 212

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 30/216 (13%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
           +  +V  ++T FYAE+GGQ  DTG   G      IT ++ + +G  + + + +       
Sbjct: 23  EGDQVELEETIFYAESGGQESDTGTIAG------ITVLKAEKQGRTIRYTLEQTPAFSVG 76

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + + ID+  R QL   H A  L+         S+V + G+ I+ D  R D    + I 
Sbjct: 77  EEVWVKIDWPRRYQLMKLHFAAELVLELFYQ-QFSNVEKIGAHISQDKSRIDFYWPESIA 135

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
              L S+ +  N +IAQ+ P+++   +  +                  R   VE      
Sbjct: 136 PL-LPSVTEQANHLIAQDTPILSAFSDEAE----------------ERRYWQVEG----- 173

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +   CGGTH+ STGE+  +  +   +I  G  R+E
Sbjct: 174 FAKVPCGGTHLKSTGEVGPIR-LKRKNIGGGKERVE 208


>gi|322816199|gb|EFZ24592.1| hypothetical protein TCSYLVIO_9264 [Trypanosoma cruzi]
          Length = 261

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 19/221 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             VV   +  + E GGQ  D G  +     + + +VQ++ +   +         L     
Sbjct: 22  YNVVLTDSVLFPEGGGQPCDHGTIVYGNEEVPVRNVQRRGDTCVIS----TPCPLEVGEE 77

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + + +D+  R     +HSA HLL   +       +      +T       +     I S 
Sbjct: 78  VEVRVDWPRRFDHMQHHSAQHLLSAVVEKASQCRLPTVSWSLTHPYSFIVLPTGNKIDSD 137

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVR------------ 677
            +  +E   ND IA+ +PV   +   ++A        +      +  R            
Sbjct: 138 VVAHLEKVCNDAIARAVPVRCDMYPSKEAYEQALREKVEKEDSGENFRQSRSIPSDVTGP 197

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           +  +  ED        C GTHVS+  ++ ++ ++ + +   
Sbjct: 198 IRIITVED--DIDQCTCCGTHVSNLTQLQMIKLLHQETKGD 236


>gi|255527935|ref|ZP_05394777.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
 gi|255508362|gb|EET84760.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium carboxidivorans
           P7]
          Length = 238

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 17/235 (7%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
            +++ E         +  V+ D+T FY   GGQ  D G       +  +  V+KK   I+
Sbjct: 11  YIKEFECKVIGADEAENAVILDRTAFYIGGGGQPCDVGVLETAKDKYVVKKVKKKGNDIY 70

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            +   ++  +          ID+++R +L   H+A H+L   +     + V+  G  +  
Sbjct: 71  HY---IDGKLPEVNEMCTGKIDWEHRYKLMRTHTAMHILCGVVWRDYKAQVT--GGDMDC 125

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLG 669
              R D    +      ++ IE+ VN  +     +   I+ RE+A            LL 
Sbjct: 126 LKGRMDFE-FENFDKELVEEIEEKVNKEVQSKRELKVNILEREEAFKIPDLIRTKINLLP 184

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                ++R V +E  D         GGTHV +T E+  + IV   S     +RI 
Sbjct: 185 EGIK-QIRTVEIEGLDL-----QADGGTHVKNTSEVGKIKIVDYKSKGKINKRIY 233


>gi|269139965|ref|YP_003296666.1| hypothetical protein ETAE_2620 [Edwardsiella tarda EIB202]
 gi|267985626|gb|ACY85455.1| hypothetical protein ETAE_2620 [Edwardsiella tarda EIB202]
 gi|304559799|gb|ADM42463.1| alanyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 255

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 43/217 (19%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAE--------GIFVHHAIVER- 562
           VFD+T FYAE+GGQ+ D G  +    G    + DVQ K          G+ V    VE  
Sbjct: 42  VFDRTIFYAESGGQVCDVGAIVSAAGGTPCPVVDVQHKLGHKLYIKREGVNVPLVAVETR 101

Query: 563 --------GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     L+    +++ ID+  R  +  +H+  H L  A++    + +   G  I  
Sbjct: 102 IVHRLAYAPDLQPGDRVIMQIDWPRRYAIMRHHTLAHFLFSAVNRYFSAGIGIKGCTIDA 161

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
                  +  K ++  +  +I+ +  D++AQ  P+        D       +L   +Y +
Sbjct: 162 QKA--VFSLDKKLSEDDFCAIQAHTRDLLAQAHPLAVESAPETD-------SLFYWRYGE 212

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +                 CGGTHV +  E+    I 
Sbjct: 213 TLI---------------PCGGTHVQALSEVSDAAIF 234


>gi|262368192|pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From
           Clostridium Perfringens
 gi|262368193|pdb|3KEW|B Chain B, Crystal Structure Of Probable Alanyl-Trna-Synthase From
           Clostridium Perfringens
          Length = 241

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 19/237 (8%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
           +GEI+E      K  V+ DQT F+   GGQ+GD G   G    +++ DV ++ EG   H 
Sbjct: 17  KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEE-EGKVYHV 71

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E   L+   +L   +D++ R      H   HLL      + G++    G  +  +  
Sbjct: 72  LEKEPKKLK---NLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEIS 126

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
             D+     +    ++  E   N +I +NL V +   ++++         L  K ++ +R
Sbjct: 127 TVDIVGF--LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP-KTDEEIR 183

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
           +V +   D        C G H  +T ++ ++ I           RIE + G RA S 
Sbjct: 184 IVEIVGLDLN-----ACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAGNRAVSE 234


>gi|308153370|gb|ADO14994.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae]
          Length = 101

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
             +   D+K L+  MD L++++   +I+L G S   K +++  V      +  A +L   
Sbjct: 1   VRLEGFDAKALRDAMDRLKQQLGDSVIVLAGAS-GGKVALVSGVNGSPTGKVKAGELLSN 59

Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            A  + GG GGGRP +AQ GG +G     A+ GV  ++K+
Sbjct: 60  IASQI-GGKGGGRPDLAQGGGEDGPALATALDGVPLWVKQ 98


>gi|260361823|ref|ZP_05774839.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|308114473|gb|EFO52013.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 79

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           ++L+    + K  ++  VT+DL+ +  A DL ++ A+ + GG GGGRP MAQ+GG + + 
Sbjct: 5   VVLLANVTDDKVGLIAGVTKDLVGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSA 63

Query: 885 ADQAIAGVASFLKK 898
             +AI  V  +L++
Sbjct: 64  LPEAIKTVQPWLEE 77


>gi|70983967|ref|XP_747509.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66845135|gb|EAL85471.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
 gi|159123513|gb|EDP48632.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 273

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 82/224 (36%), Gaps = 17/224 (7%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA--EGIFVHHAIVERG 563
           + +   ++ +QT F+ + GGQ  D G      G    +  V+  A  EG  +H     + 
Sbjct: 45  TDEDYAIITEQTIFHPQGGGQPSDEGTMTSASGGAFTVAAVRMDAVREGQVLHFGRFNQS 104

Query: 564 --ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
             +     ++  TID + R   S  H+A H+L  A+  +L   V                
Sbjct: 105 SVVFSEGDTVEQTIDAEKRLLYSRLHTAGHVLGAAVRHLLEKEVEGFDELKASHFPDAAA 164

Query: 622 THSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YND 674
              +     + K  I+  VN+ I   LPV     + E+    G   LL  +        +
Sbjct: 165 CEFQGAIDGKWKDPIQAKVNEFIEAKLPVEVDWWDEEEFRRRGLERLLPDRGAVAVAPGE 224

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           + RVV++   +        CGGTHV +T       +   +    
Sbjct: 225 KFRVVNIVGAE-----VYPCGGTHVETTDLCGSTTVRKITRKAG 263


>gi|321249270|ref|XP_003191400.1| cytoplasm protein [Cryptococcus gattii WM276]
 gi|317457867|gb|ADV19613.1| cytoplasm protein, putative [Cryptococcus gattii WM276]
          Length = 523

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 148/444 (33%), Gaps = 56/444 (12%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF-----V 555
           +++E   G+  EV    T  + E GGQ  DTG          +T        +      V
Sbjct: 85  VLKEESKGKLWEVELLDTVIFPEGGGQPSDTGVMRLLDSNGDVTHTFPIEMCLRRKLDSV 144

Query: 556 HHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           H   +  G+   LR    + +  D+  R      H++ HLL   L T L           
Sbjct: 145 HLVRIPSGVEIDLREGKDVEVEADWDRRIDQMSIHTSQHLLSAILDTHLSLPTLSWSMQP 204

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            P      V   + +T  E   IE    + I Q   V     + +     G     GT  
Sbjct: 205 YPSIEPAYVELPRALTPDEAMEIERLCGEAIKQRKKVWVDF-SIQGGDVGGEHIGEGTVG 263

Query: 673 NDRVRVVSVEYEDG-------GVHSSALCGGTHVSSTGEIMLLYIV--SESSIRA-GIRR 722
              +R +  +Y+ G              C GT   +   + LL+I+  + S        +
Sbjct: 264 TREMRGLPKDYDGGVIRHINIQDTDRNACCGTQSPNISLLSLLHIIPPALSGPSKPSPTK 323

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           +  ++G RA   L      L + A  +   + ++V R+E    E  K     + + L+  
Sbjct: 324 LYFLSGPRAILALQQASRTLSAAAKAVGYGRADLVERLER--AEVVKKDTADSLKGLRAE 381

Query: 783 VEDLSCHKI--ADVNFMSHIISEVDSKELKSV-MDALQKKIQSGIIMLVGISKEKK--AS 837
           +  L   +   A     S ++ E + K        +L        I   G   + K   S
Sbjct: 382 LAKLVGAQAVKAGKEGKSIVLVEREEKGTHDFDWLSLVGATYLESISASGQKTDGKTPPS 441

Query: 838 VLIVVTED-----------LLDRFNAVDLARLS----AKVLGGG-GGGGRPHMAQSGGPN 881
            LI++T             LL + +  DLA+L        L G   GGG      + G  
Sbjct: 442 PLIILTSSITPAPATNQTLLLIQSSDNDLAKLVNERIKAALAGRVKGGG------ARGRY 495

Query: 882 GNKAD--------QAIAGVASFLK 897
            +K D          +A V   L+
Sbjct: 496 MSKIDGKWGNVEKDVLAKVVDDLR 519


>gi|213021625|ref|ZP_03336072.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 100

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 60/96 (62%), Gaps = 2/96 (2%)

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860
           ++ ++ K L++++D L+ ++ S +I+L  +  E K S++  V++D+ DR  A +L  + A
Sbjct: 2   LAGIEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVA 60

Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 61  QQV-GGKGGGRPDMAQAGGTDAAALPAALASVQGWV 95


>gi|56807614|ref|ZP_00365516.1| COG0013: Alanyl-tRNA synthetase [Streptococcus pyogenes M49 591]
          Length = 88

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62
          + + IR  +L+F++  GH + PS++L+P NDPTL++ NSG+   K  F G   P    +T
Sbjct: 5  SSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRIT 64

Query: 63 TVQKCVRAGGKHNDLDNVGRTN 84
            QK +R     ND++NVG+T+
Sbjct: 65 NAQKSIRT----NDIENVGKTS 82


>gi|58258743|ref|XP_566784.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134106809|ref|XP_777946.1| hypothetical protein CNBA4150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260646|gb|EAL23299.1| hypothetical protein CNBA4150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222921|gb|AAW40965.1| cytoplasm protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 523

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 150/456 (32%), Gaps = 72/456 (15%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKA 550
           +Q   ++E   G+  EV    T  + E GGQ  DTG         G      I    ++ 
Sbjct: 81  EQNVALKEESKGKLWEVELLDTIIFPEGGGQPSDTGVMRLLDPNGGVSHTFPIEMCLRRK 140

Query: 551 EGIFVHHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
               VH   +  GI   LR    + +  D+  R      H++ HLL   L T L      
Sbjct: 141 LDS-VHLIRIPSGIEIDLREGREVEVEADWDRRIDQMSIHTSQHLLSAILETHLSLPTLS 199

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS----- 662
                 P      V   + +T  E   IE    + I Q   +      + D +       
Sbjct: 200 WSMQPYPSIEPAYVELPRALTPEEAMGIERLCGEAIKQCKKIWVDFTIQGDDVGKENIGA 259

Query: 663 -----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV----SE 713
                     L   Y+    +  +  +D        C GT   +T  + LL+++    S 
Sbjct: 260 GSVGTREMRGLPKDYDG-GVIRHINIQD---TDRNACCGTQSPNTSLLSLLHVIPPTLSN 315

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-------EE 766
           SS  +   ++  ++G RA   L      L + A  +   + ++V R+E          + 
Sbjct: 316 SSKPS-PTKLYFLSGPRAILALQQASRTLSAAAKAVGYGRADLVERLERAEVARKDTADS 374

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---------VDSKELKSVMDALQ 817
            + L+   AK   +  V+     +   V  +               V +  L+S   + Q
Sbjct: 375 LKGLRTELAKLVGEQAVKA--GKEGKSVTLVEREEKGTHDFDWLGLVGATYLESFSASGQ 432

Query: 818 KKI----QSGIIMLVG----ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
                   S +I+L       S   +  +LI   ++ L ++    +    A  + GGG  
Sbjct: 433 NTDGKTPPSPLIILTSSITPASTTSQTLLLIQSPDNDLAKYVNEKIKTALAGRVKGGG-- 490

Query: 870 GRPHMAQSGGPNGNKAD--------QAIAGVASFLK 897
                  + G   +K D         A+A V   L+
Sbjct: 491 -------ARGRYMSKIDGKWGKIEKDALAKVIDDLR 519


>gi|238507095|ref|XP_002384749.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|220689462|gb|EED45813.1| alanyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 270

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 16/229 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKK--AEGIFVHHAIVE 561
           A +     V  ++T F+ + GGQ  D G   G  G    +T V+     +G  +H     
Sbjct: 43  AGNDDDHVVATEKTIFHPQGGGQPSDVGTMTGPAGTTFTVTAVRMDATGQGQVLHLGRFG 102

Query: 562 RG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            G         ++   +D + R   S  H+A H+L  A+  +L   V             
Sbjct: 103 DGSCSAFSKGETVRQEVDAEKRLLHSRLHTAGHVLGAAVRHLLEKEVQDFDELKASHAPG 162

Query: 619 FDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YND 674
                 + +   + K  I+  V+  IA    V     +       G   L+  +     +
Sbjct: 163 SASCEFQGLIEGKWKEPIQKRVDQYIADKREVRVEWWDETMFREKGLERLIPDRSLMPGE 222

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + RVV++   +        CGGTHV +T       +   S  ++G  R+
Sbjct: 223 KFRVVNIVGAE-----VYPCGGTHVDTTDLCGPTSVTKISR-KSGKSRV 265


>gi|121720172|ref|XP_001276784.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119404996|gb|EAW15358.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 271

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 25/232 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA--EGIFVHHAIV--ERGILRT 567
           +V +QT F+ + GGQ  D G   G  G    +  V+  A   G  +H         +   
Sbjct: 51  IVTEQTIFHPQGGGQPSDEGHITGPLGAIFTVAAVRMDAVRNGQVLHFGHFNDTSAVFTE 110

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
             ++  TI+   R   S  H+A H+L  A+  +L   V                   + +
Sbjct: 111 GATVEQTINADKRVFYSRLHTAGHVLGAAVKHLLAKEVEGLKELKASHFPESAACEFQGL 170

Query: 628 TSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVVSVE 682
              + K  ++  V+++IA  LPV     + E+    G   L+  +      ++ RVV++ 
Sbjct: 171 IDGKWKEPVQRKVDELIAAKLPVQVEWWDEEEFRRRGMERLIPDQSLVAPGEKFRVVNIV 230

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
             D        CGGTHV +T +               +R+I   TG    S+
Sbjct: 231 GAD-----VYPCGGTHVDTTDQCGTTT----------VRKITRKTGNSKVSY 267


>gi|326797103|ref|YP_004314923.1| Alanyl-tRNA synthetase, class IIc [Marinomonas mediterranea MMB-1]
 gi|326547867|gb|ADZ93087.1| Alanyl-tRNA synthetase, class IIc [Marinomonas mediterranea MMB-1]
          Length = 213

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 30/212 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V   QT FYAE+GGQ  D G   G    + +    K  + I   + +  +   +   ++V
Sbjct: 27  VELHQTIFYAESGGQESDKGTING----IPVVLATKHGKRII--YTLERQPDFKVGDTVV 80

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+Q R  L   H A  ++         + + + G+ I+ D  R D    + I    L
Sbjct: 81  TQIDWQRRYALMKLHFAAEVVLETFYQ-HFTGMIKVGAHISQDKSRIDFEWPESIAPI-L 138

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           K IE     ++  +L + +     ++A                       Y      +  
Sbjct: 139 KEIEIEAQALLDSDLIIASDF--ADEANEK-------------------RYWRVDGFAQV 177

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            CGGTH+  T E+  L  +   +I  G  R+E
Sbjct: 178 ACGGTHLKRTSEVGCLQ-LKRKNIGKGKERVE 208


>gi|169786155|ref|XP_001827538.1| alanyl-tRNA synthetase [Aspergillus oryzae RIB40]
 gi|83776286|dbj|BAE66405.1| unnamed protein product [Aspergillus oryzae]
          Length = 270

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 16/229 (6%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKK--AEGIFVHHAIVE 561
           A +     V  ++T F+ + GGQ  D G   G  G    +T V+     +G  +H     
Sbjct: 43  AGNDDDHVVATEKTIFHPQGGGQPSDVGTMTGPAGTTFTVTAVRMDATGQGQVLHLGRFG 102

Query: 562 RG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
            G         ++   +D + R   S  H+A H+L  A+  +L   V             
Sbjct: 103 DGSSSAFSKGETVRQEVDAEKRLLHSRLHTAGHVLGAAVRHLLEKEVQDFDELKASHAPG 162

Query: 619 FDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YND 674
                 + +   + K  I+  V+  IA    V     +       G   L+  +     +
Sbjct: 163 SASCEFQGLIEGKWKEPIQKRVDQYIADKREVRVEWWDEAMFREKGLERLIPDRSLMLGE 222

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           + RVV++   +        CGGTHV +T       +   S  ++G  R+
Sbjct: 223 KFRVVNIVGAE-----VYPCGGTHVDTTDLCGPTSVTKISR-KSGKSRV 265


>gi|326790613|ref|YP_004308434.1| threonyl/alanyl tRNA synthetase SAD [Clostridium lentocellum DSM
           5427]
 gi|326541377|gb|ADZ83236.1| Threonyl/alanyl tRNA synthetase SAD [Clostridium lentocellum DSM
           5427]
          Length = 254

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 44/244 (18%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-----IRLQITDVQKKAEGIF-- 554
           +   V   ++ +V DQT  + E GGQ  D GC + +      +++   +V+K    +F  
Sbjct: 18  IATVVEVSEMGIVCDQTVAFPEGGGQQADKGCFLIEDNFKQRLKILFFNVKKGVGDVFLE 77

Query: 555 ------------VHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
                        H+  VE     +  M + + ID + R +L+I+H+A HL+  A+  + 
Sbjct: 78  QDFPTISVNTPIYHYIEVEYLRYFKVGMKVKICIDVERRARLTISHTAIHLVLMAIDRVR 137

Query: 602 -GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
            G      G+ I  D  R D      +   E+  I + VN++I  +  + T         
Sbjct: 138 KGIITYVKGADIREDLARLDFFIHDKLNDDEIMKITECVNELILNDYKIET----YAHVK 193

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
              A       Y                     CGGTH+ ST  I  + I  +S     +
Sbjct: 194 QKEAVYWKCLDY------------------VCACGGTHLPSTKYIGNVRITKKSK-GKNL 234

Query: 721 RRIE 724
           +RI 
Sbjct: 235 QRIT 238


>gi|163784882|ref|ZP_02179652.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879851|gb|EDP73585.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 93

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +   EL+ + D  + K+   +I+L  I KE  K ++++ V+++L D++ A  + +  A+V
Sbjct: 1   IPPNELRDLADVAKAKLGKSVILLSSIDKEKGKINMVVSVSKELTDKYKAGQIIKEVAQV 60

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
           + GG GGGRP MAQ GG   +K D+A      
Sbjct: 61  I-GGKGGGRPDMAQGGGTQIDKLDEAFKKFEE 91


>gi|298526029|ref|ZP_07013438.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495823|gb|EFI31117.1| predicted protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 100

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR  FL+ F K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   
Sbjct: 1  MQTHEIRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTA 59

Query: 62 TTVQKCVRAGGKHNDLDNVGR 82
          T++QKC+R      D+D VG 
Sbjct: 60 TSIQKCIRT----PDIDEVGI 76


>gi|119485815|ref|XP_001262250.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119410406|gb|EAW20353.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 277

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 21/228 (9%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA--EGIFVHHAIVER- 562
           + +   V+ +QT F+ + GGQ  D G      G+   +  V+  A  EG  +H       
Sbjct: 45  TDEDYAVITEQTIFHPQGGGQPSDEGTMTNASGVAFTVAAVRMDAVREGQVLHFGRFNPT 104

Query: 563 -----GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
                 +     ++  TID   R   S  H+A H+L  A+  +L   V            
Sbjct: 105 SSSSSSVFSEGDAVEQTIDADKRLLYSRLHTAGHVLGAAVRHLLEKEVEGFDELKASHFP 164

Query: 618 RFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----- 671
                  +     + K  I+  VN+ I   LPV     + ++    G   LL  +     
Sbjct: 165 DAAACEFQGAIDGKWKDPIQAKVNEFIDAKLPVEVDWWDEDEFRRRGLERLLPDRGSVAI 224

Query: 672 -YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
              ++ RVV++   +        CGGTHV +T       +   +    
Sbjct: 225 APGEKFRVVNIVGAE-----VYPCGGTHVDTTDLCGSTTVRKITRKAG 267


>gi|28898540|ref|NP_798145.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365020|ref|ZP_05777591.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus K5030]
 gi|260879585|ref|ZP_05891940.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AN-5034]
 gi|260894940|ref|ZP_05903436.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           Peru-466]
 gi|260901050|ref|ZP_05909445.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AQ4037]
 gi|28806758|dbj|BAC60029.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085987|gb|EFO35682.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           Peru-466]
 gi|308093222|gb|EFO42917.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AN-5034]
 gi|308110720|gb|EFO48260.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus
           AQ4037]
 gi|308111714|gb|EFO49254.1| threonyl/alanyl tRNA synthetase SAD [Vibrio parahaemolyticus K5030]
          Length = 213

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 30/213 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV    T FYAE+GGQ  D G   G    +++    K    I   + +  +   R    +
Sbjct: 26  EVELSHTIFYAESGGQESDAGTIDG----IRVVGAIKSGSRIV--YTLERQPTFRVGDQV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID+Q R  L   H A  ++    +    +++ + G+ I+ D  R D    + IT   
Sbjct: 80  ITQIDWQRRYALMKLHFAAEVILELFTQKF-ANIQKVGAHISADKSRIDFEWPESITPL- 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L   +     +I  +  + +   +                     R   VE       + 
Sbjct: 138 LAEFQQRAQAVIDSDAEIESAFSDE----------------GQERRYWKVEG-----FAQ 176

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTH+  T E+  +  +   ++  G  R+E
Sbjct: 177 VPCGGTHLKRTSEVGRIA-LKRKNVGKGKERVE 208


>gi|254228206|ref|ZP_04921635.1| metal-dependent hydrolase [Vibrio sp. Ex25]
 gi|151939279|gb|EDN58108.1| metal-dependent hydrolase [Vibrio sp. Ex25]
          Length = 230

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G    + +   QK   G+ + + +
Sbjct: 31  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTING----IPVLIAQKL--GVRLIYTL 84

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 85  ESSPNFTLGDAVTTCIDWKRRYALMKLHFAAEVVLEMFYQRR-EGIVKIGAHISENKSRI 143

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK+IE +V D+I  +  V+    + +++                    
Sbjct: 144 DFEWSESIGPL-LKAIETDVQDLINSDS-VIISDFSDQESERRYWR-------------- 187

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                     +   CGGTH+  T E+  +  +   +I  G  R+E
Sbjct: 188 ------VDGFAQVPCGGTHLKRTSEVGQIQ-LKRKNIGKGKERVE 225


>gi|326436972|gb|EGD82542.1| hypothetical protein PTSG_03194 [Salpingoeca sp. ATCC 50818]
          Length = 314

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/302 (20%), Positives = 113/302 (37%), Gaps = 51/302 (16%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ--KKAEGI 553
           V + E  +     ++  V+ +QT F+ + GGQ  DTG    D    ++T V+  K   G+
Sbjct: 42  VFECEDSDNGDGSKQWIVLLNQTLFHPQGGGQPSDTGTITKDDAVFRVTHVRISKDRHGV 101

Query: 554 FVHHAIVERG--ILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALS---TILGSHVSQ 607
             H          L     + L +D   RR+ +   HSA HLL  A+     +L + +  
Sbjct: 102 VEHLGTFANPNSTLCAGDEVSLAVDADKRRRHASRLHSAGHLLDAAMHSAGHLLDAAMQA 161

Query: 608 NGSCITPDGLRF----DVTHSKPITSAELKSIEDNVND----IIAQNLPVVTRIMNREDA 659
            G       L         +   I + E  ++   +N+    ++++N  V  RI + E +
Sbjct: 162 IGRTDLDTRLHLHCARATEYIGAIPAEERAAVVARLNEAVSTLVSKNTDVSMRIYDVEGS 221

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                            RVVSV            CGGTHV++T ++  L           
Sbjct: 222 EL-------------PRRVVSVGG------CECACGGTHVNNTSQLQGLR---------- 252

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLK-----VSQGNVVGRVEEIWEEYRKLQLIH 774
           + RI+    + A+ +    ++   + A   K      +Q     +     +E ++ Q   
Sbjct: 253 VTRIK-KNKKAAKVYYELDEQAASNDAEGKKTHATQTTQDEHPPQAHAQSQETQETQEAR 311

Query: 775 AK 776
           A+
Sbjct: 312 AE 313


>gi|149569588|ref|XP_001506604.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 330

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 114/311 (36%), Gaps = 18/311 (5%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +  H    A  T LG    Q  +             +  +T A++ +IE  VN+ I   +
Sbjct: 29  TPRHSQGRAARTSLGEEQRQLAAGELGKQRSVIELDAPELTPAQVVAIEQEVNEKIRARV 88

Query: 648 PVVTRIMNREDAIASGAAAL-LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           PV  + +   D       +  L   +   +RVV++E  D     S LC GTHV +  E+ 
Sbjct: 89  PVSVKELEATDPEVEKVRSRGLPDDHAGPIRVVNIEGLD-----SNLCCGTHVCNLAELQ 143

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           ++ ++     +     +  + G R    +     + ++L   LK      V  VE++   
Sbjct: 144 VIKLLGVEKGKKNRTNLVFLAGGRVLQAVERSYGRERALTGRLKCGPEEHVEAVEKLQAS 203

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
            + LQ      K+   V   S H +   + +   ++S       ++     +       +
Sbjct: 204 TKLLQ------KVSRTVHTASVHPLPLGIQWSGTVLSAGQDGMARAWAWDSEVMGSKKTL 257

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           + + +  EK A + ++          AV+     A  L  G G G+P   Q      ++ 
Sbjct: 258 LFLTVGDEKGAGLFLLAGPPE-----AVNTLGPRAAELLQGRGAGKPGRFQGKATKLSQR 312

Query: 886 DQAIAGVASFL 896
            + +  +  F+
Sbjct: 313 AEVLTLLRDFV 323


>gi|153836195|ref|ZP_01988862.1| metal-dependent hydrolase [Vibrio parahaemolyticus AQ3810]
 gi|149750470|gb|EDM61215.1| metal-dependent hydrolase [Vibrio parahaemolyticus AQ3810]
          Length = 213

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 30/213 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV    T FYAE+GGQ  D G   G    + +    K    I   + +  +   R    +
Sbjct: 26  EVELSHTIFYAESGGQESDAGTIDG----IPVVGAIKSGSRIV--YTLERQPTFRVGDQV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID+Q R  L   H A  ++    +    +++ + G+ I+ D  R D    + IT   
Sbjct: 80  ITQIDWQRRYALMKLHFAAEVILELFTQKF-ANIQKVGAHISADKSRIDFEWPESITPL- 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L   +     +I  +  + +   +                     R   VE       + 
Sbjct: 138 LAEFQQQAQAVIDSDAEIESAFSDE----------------GQERRYWKVEG-----FAQ 176

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTH+  T E+  +  +   ++  G  R+E
Sbjct: 177 VPCGGTHLKRTSEVGRIA-LKRKNVGKGKERVE 208


>gi|262394073|ref|YP_003285927.1| alanyl-tRNA synthetase domain protein [Vibrio sp. Ex25]
 gi|262337667|gb|ACY51462.1| alanyl-tRNA synthetase domain protein [Vibrio sp. Ex25]
          Length = 213

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G    + +   QK   G+ + + +
Sbjct: 14  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTING----IPVLIAQKL--GVRLIYTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++   ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 68  ESSPNFTLGDAVTTCIDWKRRYALMKLHFAAEVVLEMFYQRR-EGIVKIGAHISENKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK+IE +V D+I  +  V+    + +++                    
Sbjct: 127 DFEWSESIGPL-LKAIETDVQDLINSDS-VIISDFSDQESERRYWR-------------- 170

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                     +   CGGTH+  T E+  +  +   +I  G  R+E
Sbjct: 171 ------VDGFAQVPCGGTHLKRTSEVGQIQ-LKRKNIGKGKERVE 208


>gi|152996320|ref|YP_001341155.1| threonyl/alanyl tRNA synthetase SAD [Marinomonas sp. MWYL1]
 gi|150837244|gb|ABR71220.1| Threonyl/alanyl tRNA synthetase SAD [Marinomonas sp. MWYL1]
          Length = 212

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+          ++   +T FYAE+GGQ  DTG   G     ++   +K  + I   + +
Sbjct: 14  ELTTTITHIDGNQIQLSETIFYAESGGQESDTGSIDG----YEVVKAEKAGKSII--YTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     S+++ ID+  R  L   H A  ++       L  ++ + G+ I+    R 
Sbjct: 68  ACAADFHIGQSVLVKIDWPRRYSLMRLHFAAEVVLELFYKALP-NLEKMGAHISDTKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + I+ + L  I+     +I  +LP+     + E A                    
Sbjct: 127 DFEWPESIS-SMLPDIQAQAQLLIDADLPIEKGF-SDEQAERR----------------- 167

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
              Y      +   CGGTHV ST E+  +  +   ++  G  R+E
Sbjct: 168 ---YWKLDGSAQVPCGGTHVKSTIELGSIK-LKRKNVGKGKERVE 208


>gi|328468850|gb|EGF39810.1| putative alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 213

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 30/213 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV    T FYAE+GGQ  D G   G    +++    K    I   + +  +   R    +
Sbjct: 26  EVELSHTIFYAESGGQESDAGTIDG----IRVVGAIKSGSRIV--YTLERQPTFRVGDQV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +  ID+Q R  L   H A  ++    +    +++ + G+ I+ D  R D    + IT   
Sbjct: 80  ITQIDWQRRYVLMKLHFAAEVILELFTQKF-ANIQKVGAHISADKSRIDFEWPESITPL- 137

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L   +     +I  +  + +   +                     R   VE       + 
Sbjct: 138 LAEFQQQAQAVIDSDAEIESAFSDE----------------GQERRYWKVEG-----FAQ 176

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTH+  T E+  +  +   ++  G  R+E
Sbjct: 177 VPCGGTHLKRTSEVGRIA-LKRKNVGKGKERVE 208


>gi|70926489|ref|XP_735776.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56509736|emb|CAH86830.1| hypothetical protein PC302180.00.0 [Plasmodium chabaudi chabaudi]
          Length = 258

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 27/223 (12%)

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           ++  FN   ++ +  +  ++  +           L  +        Y++L      K + 
Sbjct: 1   NMEEFNTLFKKHQLVSDTNNFKINK------IIDLPVEKAHEIKCKYNVLPTIDHHKYNW 54

Query: 474 KVLCQKPPIDLTNGVSSIVKA---IVQQGEIVEEAV----------SGQKVE-------V 513
               + P     N  +  +K+   I+  G  ++E V          SG+K+E       +
Sbjct: 55  NNTFEIPKSKEENKDNLRLKSSVQIIYDGNFLDEIVHTDDDAKESSSGEKIENKQKKYAL 114

Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           +  +T FY E GGQ+ DTG    + ++ Q+ +VQK      +H  ++  G ++   ++  
Sbjct: 115 ILKETNFYYENGGQIYDTGYIQNESMKFQVLNVQK-MNDYILHIGVLLNGHIKKNDAIET 173

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            +D++ R+ ++ NH+ATHLL+ AL  +L   V+Q  +    +G
Sbjct: 174 VVDFERRKLIACNHTATHLLNFALRKVLTDQVNQKKNKCDNNG 216


>gi|296158690|ref|ZP_06841519.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia sp. Ch1-1]
 gi|295890895|gb|EFG70684.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia sp. Ch1-1]
          Length = 256

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 87/242 (35%), Gaps = 43/242 (17%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQK------------ 548
           V   V      V  D T  Y E GGQ  D G  +  +G+ ++    +K            
Sbjct: 22  VATVVKLGAGHVELDATVAYPEGGGQDADHGVIVLQNGVEVRFIHAKKMYGDHLAVADFP 81

Query: 549 --KAEGIFVHHAIVER----GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
             +  G+  H    +       +R   ++ + I+   R QLS++H+A H L   +  I  
Sbjct: 82  DIQIGGVIEHIVHPDDIGYLANVRVGDAVEVRINRLRRAQLSLSHTACHFLLIGVQQIRP 141

Query: 603 SHVSQN-GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
              +   G  I  D  R D    + I++ E++ IE   N  + +   V            
Sbjct: 142 DAAAWILGCHIRTDAARLDFAVDERISAEEIREIETIANAFVLRASDVRV---------- 191

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                     Y   V   +  +E  G  +   CGGTH+ +   I  + I    S+ AG  
Sbjct: 192 ----------YPHSVHPDARYWECEG--NVIPCGGTHLGNARPIGRMEI-RRKSVGAGKE 238

Query: 722 RI 723
           R+
Sbjct: 239 RL 240


>gi|317033624|ref|XP_001395216.2| hypothetical protein ANI_1_1396104 [Aspergillus niger CBS 513.88]
          Length = 664

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 19/245 (7%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-----GIRLQITDV 546
           V  + +  + + +  +  +  VV D T F+ + GGQ  DTG    D      +  ++  V
Sbjct: 421 VSKLPEADQALAKDSAEIEHAVVTDSTIFHVQGGGQPSDTGTMTTDVAPKADLIFEVKSV 480

Query: 547 QKKAEGIFVHH----AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL----HHALS 598
           ++ A+G  + H      V      +   +   +D + R   S  H+A H++    H    
Sbjct: 481 RQPAQGNQILHLGRFVPVGTTQFDSGEEVQQRVDAEKRNLHSRLHTAGHVMSLAIHALCR 540

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +   V ++ +   P         +      EL  I+   ++ +    PV     + E+
Sbjct: 541 EGVLPPVKESKASHYPGSASVSFEGTLEGKHKEL--IQAKTDEFVRSASPVRIHWWSMEE 598

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  A              VE E  G +    CGGTHV+    +  + +   S    
Sbjct: 599 LKEKCYVAEGFALPEGETLGRVVEMEGLGSY---PCGGTHVTDCSLVGKIEVKKISR-SK 654

Query: 719 GIRRI 723
           G+ R+
Sbjct: 655 GVSRV 659


>gi|269968488|ref|ZP_06182498.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269826904|gb|EEZ81228.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 230

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G    + +   QK   G+ + + +
Sbjct: 31  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTING----IPVLIAQKL--GVRLIYTL 84

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +  +ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 85  ESSPNFTLGDIVTTSIDWKRRYALMKLHFAAEVVLEMFYQRR-EGIVKIGAHISENKSRI 143

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK IE +V D+I  +  V+    + +++                    
Sbjct: 144 DFEWSENIGPL-LKEIETDVQDLINSDS-VIISDFSDQESERRYWR-------------- 187

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                     +   CGGTH+  T E+  +  +   +I  G  R+E
Sbjct: 188 ------VDGFAQVPCGGTHLKRTSEVGQIQ-LKRKNIGKGKERVE 225


>gi|156049927|ref|XP_001590925.1| hypothetical protein SS1G_07549 [Sclerotinia sclerotiorum 1980]
 gi|154691951|gb|EDN91689.1| hypothetical protein SS1G_07549 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 269

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 17/243 (6%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA 550
           +  + ++ +++ +        +    T F+ + GGQ  D G     +GI+  +  V+  A
Sbjct: 28  LTTLAEENKLLFKDAKDDAYAITTKSTIFHPQGGGQPSDEGTMENEEGIKFTVQMVRMSA 87

Query: 551 --EGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
             +G  +H               +   ID + R   S  H+A H+L  A+  ++ S V  
Sbjct: 88  ITDGEVLHFGTFSAPTSFSPSQQITQKIDQEKRLLYSRYHTAGHVLGAAVRHLVSSSVPN 147

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                              +  +  K+ I+  +++ I  ++PV     +  D IA+G   
Sbjct: 148 FDETKASHFPSSAACEFAGLIESTWKTPIQQKLDEYIEADMPVEIDWWDEADFIANGMER 207

Query: 667 LLGTKY------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           L+  +        ++ RVV +   +     +  CGGTHV ST       +   +    G 
Sbjct: 208 LIPDRVAMGMTKEEKFRVVKIVGAE-----TYPCGGTHVDSTKHCGKTSVKKVAR-SKGT 261

Query: 721 RRI 723
            R+
Sbjct: 262 SRV 264


>gi|301163594|emb|CBW23145.1| putative alanyl-tRNA synthetase (fragment) [Bacteroides fragilis
           638R]
          Length = 154

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+A HLL+  +    G   S+N + I     + D       T
Sbjct: 1   MEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPTCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++ +IE+ VN+ I ++LPV    M  E+A +    + L    ++ +R+V +     G 
Sbjct: 60  EEQIHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + +  C G HV +T EI L  I+S      G  R+   
Sbjct: 115 YDACACIGQHVENTSEIGLFKIISYD-YADGKLRLRFK 151


>gi|67459169|ref|YP_246793.1| metal-dependent hydrolase [Rickettsia felis URRWXCal2]
 gi|67004702|gb|AAY61628.1| Predicted metal-dependent hydrolases [Rickettsia felis URRWXCal2]
          Length = 235

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 12/232 (5%)

Query: 493 KAIVQQGEIVEEAVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551
             + +    +      +K + ++ DQT FY + GGQ  D G    D     +T V+ + +
Sbjct: 10  TYLFESKASILNYGEDEKGKFIILDQTIFYPQGGGQPSDQGVIQNDYFEANVTLVR-QVD 68

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
               H+       +     +   +D   R   S  H+A HLL + +  +     +  G  
Sbjct: 69  TEIRHYIGAASNEIPINSIINCLVDKNRRMLNSRYHTAAHLLGNIVEILYPMLKAVKG-H 127

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
             P     +     P+   ++  I++ V+  IA+N        +                
Sbjct: 128 SFPGEAYVEFQGDVPV---DVTQIQNTVDQTIAKNNKTEIFETDPISFEQQFYKLPYIIP 184

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            N + RV+ +     G  +   CGGTH+SST EI  + I     ++  I RI
Sbjct: 185 ENKKFRVMRI-----GDMAPVPCGGTHLSSTTEIGKILIGKV-KLKNNIVRI 230


>gi|329957977|ref|ZP_08298409.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides clarus YIT 12056]
 gi|328522126|gb|EGF49242.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides clarus YIT 12056]
          Length = 582

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 10/157 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S + + I     + D   +   T
Sbjct: 428 MEQQIQLNEHNKQEYPPMHTTEHIVNQTMIRLFGCGRSVS-AHIERKKSKLDYRLNACPT 486

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++KS+E+ VN++IA++LPV T  + +E+A        L    ++ VRVV V     G 
Sbjct: 487 EEQIKSLEEAVNEVIARHLPVTTEFITQEEAKGRFDLERLPEDASETVRVVKV-----GD 541

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIR 721
           +   LC GTHV++T EI    I+S    E S R  +R
Sbjct: 542 YDECLCIGTHVANTSEIGTFKIISHDWDEESKRWRMR 578


>gi|238920792|ref|YP_002934307.1| alanyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|238870361|gb|ACR70072.1| alanyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
          Length = 255

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/217 (23%), Positives = 78/217 (35%), Gaps = 43/217 (19%)

Query: 514 VFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAE--------GIFVHHAIVER- 562
           VFD+T FYAE+GGQ+ D G       G    + DVQ K          G+ V    VE  
Sbjct: 42  VFDRTIFYAESGGQVCDVGSIRAVVGGAPCPVVDVQHKLGHRLYIKREGVNVPLVDVETR 101

Query: 563 --------GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                     L+    +++ I++  R  +  +H+  H L  A S    +  S  G  I  
Sbjct: 102 IVHRLAYAPNLQPGDRVIMQINWSRRYAIMRHHTLAHFLFSAFSRHFSASASVKGCIIDA 161

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
                  +  K ++  +  +I+    +++AQ  P+        D        L    Y +
Sbjct: 162 QKA--VFSLDKKLSDDDFSAIQSYTREMLAQGSPMWIEPAPETD-------TLFYWNYGE 212

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +                 CGGTHV +  EI    I 
Sbjct: 213 TII---------------PCGGTHVQALAEISDAAIF 234


>gi|154318102|ref|XP_001558370.1| hypothetical protein BC1G_03034 [Botryotinia fuckeliana B05.10]
 gi|150843692|gb|EDN18885.1| hypothetical protein BC1G_03034 [Botryotinia fuckeliana B05.10]
          Length = 269

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 17/240 (7%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA--E 551
           + ++ +++ +        ++   T F+ + GGQ  D G    + G +  +  V+  A  +
Sbjct: 31  LSEEDKLLFKDAKDDTHVIITKSTIFHPQGGGQPSDEGVMESEEGTKFTVQMVRMSAATD 90

Query: 552 GIFVHHA-IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           G  +H               +   ID + R   S  H+A H+L  A+  ++ S V     
Sbjct: 91  GEVLHFGSYSTPTQFLPGQEITQKIDKEKRLLYSRYHTAGHVLGAAVRHLVSSSVPNFDE 150

Query: 611 CITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                           +  +  K+ I+  ++  I  ++PV     +  D IA+G   L+ 
Sbjct: 151 TKASHFPSSAACEFAGLIESTWKTPIQQKLDGYIEADMPVEIHWWDEADFIANGMERLIP 210

Query: 670 TKY------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +        ++ RVV +   +     +  CGGTHV ST +      V + +   G  R+
Sbjct: 211 DRAAMGMTKEEKFRVVKIVGAE-----TYPCGGTHVDSTSQCGKTT-VKKIARSKGTSRV 264


>gi|91224404|ref|ZP_01259666.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91190746|gb|EAS77013.1| putative alanyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 213

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+     +    +V  DQT F+AE+GGQ  D G   G    + +   QK   G+ + + +
Sbjct: 14  ELNSRVTNVDGNKVELDQTIFFAESGGQESDKGTING----IPVLIAQKL--GVRLIYTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      +   ID++ R  L   H A  ++           + + G+ I+ +  R 
Sbjct: 68  ESSPNFTLGDIVTTNIDWKRRYALMKLHFAAEVVLEMFYQRR-EGIVKIGAHISENKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D   S+ I    LK IE +V D+I  +  V+    + +++                    
Sbjct: 127 DFEWSESIGPL-LKEIETDVQDLINSDS-VIISDFSDQESERRYWR-------------- 170

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                     +   CGGTH+  T E+  +  +   +I  G  R+E
Sbjct: 171 ------VDGFAQVPCGGTHLKRTSEVGQIQ-LKRKNIGKGKERVE 208


>gi|260187570|ref|ZP_05765044.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
          Length = 87

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 17  KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHND 76
           K GH  +PS+S+I  +DP L+F N+GMV F   F GQ  P Y   T++QKC+R      D
Sbjct: 2   KAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQKCIRT----PD 56

Query: 77  LDNVGRTNRHHTFFEMLGNFSFGGYFKER 105
           +D VG T RH+TFF     F     F+ R
Sbjct: 57  IDEVGITTRHNTFFSDGPQFQLRRLFQTR 85


>gi|224023759|ref|ZP_03642125.1| hypothetical protein BACCOPRO_00475 [Bacteroides coprophilus DSM
           18228]
 gi|224016981|gb|EEF74993.1| hypothetical protein BACCOPRO_00475 [Bacteroides coprophilus DSM
           18228]
          Length = 153

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+  H+++  +  + G   + + + I     + D   S+  T
Sbjct: 1   MEQQPQLNEHNKQEYPPMHTCEHIVNRTMVNLFGCGRAVS-AHIERKKSKLDFALSQAPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E++ IE  VN++IA++L V  + +++++A        L    +D VRVVSV     G 
Sbjct: 60  DEEIEQIEAKVNEVIARHLDVTVKFISQQEAAGQFDLKRLPEGASDTVRVVSV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +   LC GTHV++T EI    I+S    + GI R+   
Sbjct: 115 YDDCLCIGTHVANTSEIGTFKIISHD-YKDGIFRMRFK 151


>gi|328471106|gb|EGF42011.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus MTCC 5462]
          Length = 74

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
           +   IR  FL+FF+  GH + PS+SLIP +DPTL++ NSG+   K  F G   P    +
Sbjct: 4  MSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDNPRI 63

Query: 62 TTVQKCVRAGG 72
          T  QK +R   
Sbjct: 64 TNAQKSIRTND 74


>gi|330974931|gb|EGH74997.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 80

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 57/80 (71%), Gaps = 8/80 (10%)

Query: 134 EEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +EA+ +W K  G+ A++++RI  N       DNFW+M +TGPCGPCSEIFFD G  I GG
Sbjct: 1   DEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEIFFDHGPEIWGG 60

Query: 187 LPGSS-EEGERYIEIWNLVF 205
            PGS  E+G+RYIEIWN VF
Sbjct: 61  PPGSPEEDGDRYIEIWNNVF 80


>gi|260778279|ref|ZP_05887172.1| alanyl-tRNA synthetase domain protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606292|gb|EEX32577.1| alanyl-tRNA synthetase domain protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 213

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E++      +   +  D+T FYAE+GGQ  D G   G    +Q+   QK+  G  + + +
Sbjct: 14  ELLSTVSWIEGRNLRLDKTIFYAESGGQESDEGTIAG----IQVECAQKQ--GSEITYTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +    ++  I++  R  L   H A  ++    +      + + G+ I  D  R 
Sbjct: 68  AAEPPFQVGDEVITVINWTRRYALMKLHFAAEVILELFTQSYPD-IEKIGAHIGQDKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + ++   L   E+    +I +   + ++                        R  
Sbjct: 127 DFVWPESLSPL-LPEFENKAQALINKGQLIESQF----------------EDKASERRFW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   CGGTH+  T E+  +  +   +I  G  R+E
Sbjct: 170 RVEG-----FAQVACGGTHLRRTSEVGKIA-LKRKNIGRGKERVE 208


>gi|253567091|ref|ZP_04844542.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|251944215|gb|EES84724.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5]
          Length = 154

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+A HLL+  +    G   S+N + I     + D       T
Sbjct: 1   MEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPTCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++ +IE+ VN+ I ++LPV    M  E+A +    + L    ++ +R+V +     G 
Sbjct: 60  EEQIHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASEILRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + +  C G HV +T EI L  I+S      G  R+   
Sbjct: 115 YDACACIGQHVENTSEIGLFKIISYD-YADGKLRLRFK 151


>gi|241767682|ref|ZP_04765314.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax delafieldii 2AN]
 gi|241361362|gb|EER57881.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax delafieldii 2AN]
          Length = 196

 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 14/165 (8%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    ++   ID++ R ++   H+ +HLL H +  +       NG  ITPD  R D   +
Sbjct: 31  LAPGTAVTARIDWERRHRMMRLHTTSHLLCHVVPQL------VNGCSITPDYARLDFAMT 84

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVS 680
            P+   +L +    +   +A   P+    ++  +  A+       ++   +   R+R + 
Sbjct: 85  DPLDKEQLTAAIAAL---VAAAHPITVASISDAELDANPQLVKSMSVQPPRGTGRIRTIR 141

Query: 681 VEYEDGGV-HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +  E          CGGTHV+ST EI  + +       A  RR+ 
Sbjct: 142 IGGEGLQPAIDLQPCGGTHVASTAEIGAVVVTRIEKKSAITRRVT 186


>gi|325298491|ref|YP_004258408.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides salanitronis DSM
           18170]
 gi|324318044|gb|ADY35935.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides salanitronis DSM
           18170]
          Length = 152

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+ +    H+  H+++  +  + G   + + + I     + D    +  +  ++ 
Sbjct: 5   QLNEHNKTEYPPMHTCEHIVNRTMVNLFGCGRAVS-AHIERKKSKLDFALPQAPSPEDIA 63

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE  VN+ IA++LPV T  + +++A+       L    +D VR+V V     G +   L
Sbjct: 64  RIEAQVNETIARHLPVTTEFITQQEALGRFDLKRLPEGASDTVRIVKV-----GDYDECL 118

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           C G HV++T EI    I+S S  + GI R+   
Sbjct: 119 CIGLHVANTSEIGTFKIIS-SDYKDGIFRMRFK 150


>gi|226328741|ref|ZP_03804259.1| hypothetical protein PROPEN_02641 [Proteus penneri ATCC 35198]
 gi|225201927|gb|EEG84281.1| hypothetical protein PROPEN_02641 [Proteus penneri ATCC 35198]
          Length = 73

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +    + K S+++ VT+DL  +  A +L    A+ + GG GGGRP MAQ+GG + +    
Sbjct: 2   LSTISDGKVSLIVGVTKDLTAKVKAGELISFVAQQI-GGKGGGRPDMAQAGGTDIDALPA 60

Query: 888 AIAGVASFLK 897
           A+A V  +++
Sbjct: 61  ALASVDEWVE 70


>gi|218131207|ref|ZP_03460011.1| hypothetical protein BACEGG_02813 [Bacteroides eggerthii DSM 20697]
 gi|217986599|gb|EEC52934.1| hypothetical protein BACEGG_02813 [Bacteroides eggerthii DSM 20697]
          Length = 155

 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S + + I     + D   +   T
Sbjct: 1   MEQTIQLNEHNKQEYPPMHTCEHIINQTMIRLFGCGRSVS-AHIERKKSKLDYRLTACPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++K++E+ VN II Q+LPV T  + +E+A        L    ++ VRVV V     G 
Sbjct: 60  EEQIKNLENTVNQIIMQHLPVTTEFITQEEAKGRFDLKRLPEDASETVRVVKV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR-RIEAI 726
           +   LC GTHV++T EI    I+S        R RI   
Sbjct: 115 YDECLCIGTHVANTSEIGTFKIISHDWDGENKRWRIRFK 153


>gi|218506791|ref|ZP_03504669.1| alanyl-tRNA synthetase [Rhizobium etli Brasil 5]
          Length = 119

 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 70/97 (72%)

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             ++A V ++   ++ VD K+LK + D  +  I SGI+ L+G+S++ KAS ++ VT DL+
Sbjct: 9   VREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLIGVSEDGKASAVVAVTPDLV 68

Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           DRF+AVDL R+++  LGG GGGGRP MAQ+GGP+G K
Sbjct: 69  DRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 105


>gi|149190692|ref|ZP_01868959.1| putative alanyl-tRNA synthetase [Vibrio shilonii AK1]
 gi|148835458|gb|EDL52428.1| putative alanyl-tRNA synthetase [Vibrio shilonii AK1]
          Length = 213

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+  +    +   V  ++T FYAEAGGQ  D+G          ++ +Q    G  + + +
Sbjct: 14  ELRSKVTHIEGNNVELNKTIFYAEAGGQESDSGTIN------DVSVLQATQNGSRIIYTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                     ++V  ID++ R  L   H A  ++   L     S + + G+ I  D  R 
Sbjct: 68  ASLPDFEVGETVVTCIDWERRYSLMKLHFAAEVVLEKLYQRC-SGIVRIGAHIAQDKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DV   + +T+  LK +E     +I  +  +++   ++E+                  R  
Sbjct: 127 DVEWPENLTTL-LKEVETKAQLLIDSDARIISDFSDKEN----------------ERRYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   C GTH++ T E+  +  +   ++  G  R+E
Sbjct: 170 KVEG-----FTQVPCCGTHLNRTSEVGQIR-LKRKNLGKGKERVE 208


>gi|302338824|ref|YP_003804030.1| threonyl/alanyl tRNA synthetase SAD [Spirochaeta smaragdinae DSM
           11293]
 gi|301636009|gb|ADK81436.1| Threonyl/alanyl tRNA synthetase SAD [Spirochaeta smaragdinae DSM
           11293]
          Length = 216

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E           +V  D++ F+A +GGQ  D G   G    L + D     +G  + + +
Sbjct: 16  EADATVTEIDGSKVTLDRSIFFAFSGGQESDYGTIGG----LSVHDAC--IDGKEIIYTL 69

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +   S+++ ID++ R  L   H A  ++   +  +    + + G+ I+    R 
Sbjct: 70  EMIPSFKKGDSVIIRIDWERRYTLMRLHMAAEIVLVLVMKMFPG-IEKIGAHISEKKSRL 128

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D      +    L  IE     ++A+++P+++   ++  A      A  G          
Sbjct: 129 DFVADSALRQ-TLPEIEKQALALVAEDVPIISDFSDKTAARRFWRIAGFG---------- 177

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                      S  CGGTH+  TGEI  L  +   +I  G  RIE
Sbjct: 178 -----------SLPCGGTHLKRTGEIGPLQ-LGRKNIGKGKERIE 210


>gi|315048105|ref|XP_003173427.1| ATP binding/alanine-tRNA ligase [Arthroderma gypseum CBS 118893]
 gi|311341394|gb|EFR00597.1| ATP binding/alanine-tRNA ligase [Arthroderma gypseum CBS 118893]
          Length = 273

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 23/248 (9%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI------RLQITD 545
           V A+    + + +  S  +  V+ D T FY + GGQ  DTG  + D          ++  
Sbjct: 28  VSALSAPDQALVKDPSEIEHAVITDSTVFYVQGGGQPSDTGTMMSDAAPNKANPVFEVKS 87

Query: 546 VQKKAEG-IFVHHAIVER---GILRTEMSLVLTIDYQNRRQLSINHSATHLLH---HALS 598
           V++ A+    +H            +    +   +D   R   S  H+A H+L    HALS
Sbjct: 88  VRQPAQSSQILHLGRFIPIGATGFKVGEEVQQHVDADKRNLHSRLHTAGHILSLAIHALS 147

Query: 599 T--ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
              +L S      S   PD               ++  I++  ++ +    PV       
Sbjct: 148 RDGVLPSLKESKASH-YPDSAAVVFEGIIEGKHKDI--IQEKTDEFVRSASPVKIHWWPM 204

Query: 657 EDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           E+          G            VE E  G +    CGGTHV     +  + +   S 
Sbjct: 205 EELFEKCHGVTEGFELPEGETMGRVVEMEGLGSY---PCGGTHVQDCSLVGKIEVKKISR 261

Query: 716 IRAGIRRI 723
              G+ R+
Sbjct: 262 -SKGVSRV 268


>gi|145353213|ref|XP_001420915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581151|gb|ABO99208.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 269

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 18/231 (7%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD--VQKKAEGIFVHHAIVERGILRTEM 569
           E+    T  +   GGQ  D+G  +G   R    D   +++  G   H     +       
Sbjct: 43  EMTLASTIAHPAGGGQPSDSGRVVGANGRAWAFDAATRRRETGEVAHAGR-TKPPFEVGD 101

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALST--ILGSHVSQNGSCITP------DGLRFDV 621
           +  +TID   R   +  HSA H L  A+    +  + ++       P         + D 
Sbjct: 102 ACRVTIDGAKRVLHARIHSAGHALDVAMIRAGLPPTTLTPTKGVHEPALAYVEYKGKVDP 161

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVS 680
            H     +A +  +   +  +IA++       M  ++A A+    L      D   R+V+
Sbjct: 162 EHELADANALMARLNAEMAKLIAEDGASAAAEMTYDEAKAACGGELPAFIAPDMTPRIVT 221

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI-EAITGQR 730
           +  +  G      CGGTHV+   EI    +     ++ G+ R+  AI G  
Sbjct: 222 IVPDTPG----CPCGGTHVARMSEIQDFKMTGV-RVKKGVTRLSYAIPGMA 267


>gi|291614198|ref|YP_003524355.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291584310|gb|ADE11968.1| threonyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 637

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 22/223 (9%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  +  L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSHLISVDAKLAVITDKDADGVDLIRHSTAHLLAYAVKDLFPEAQVTIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  +S+P T  +L +IE  + ++  ++LPV  +++ R++A+A   +  +G KY   +  
Sbjct: 104 YDFAYSRPFTPEDLTAIEKRMAELAKKDLPVTRKVLPRDEAVAYFKS--IGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                +D  ++S      LC G HV STG++    ++    +     R            
Sbjct: 162 SIPADQDVSLYSEGDFTDLCRGPHVPSTGKLKAFKLMK---VAGAYWR------------ 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
              ++E L+ +       + ++   +  + E  ++      K+
Sbjct: 207 GDSKNEMLQRIYGTAWAKKEDLEAYLVRLEEAEKRDHRKLGKQ 249


>gi|189463515|ref|ZP_03012300.1| hypothetical protein BACCOP_04234 [Bacteroides coprocola DSM 17136]
 gi|189429782|gb|EDU98766.1| hypothetical protein BACCOP_04234 [Bacteroides coprocola DSM 17136]
          Length = 153

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 7/152 (4%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++  N+++    H+  H+++  +  I G   + + + I     + D    K  +  ++++
Sbjct: 7   LNEHNKQEYPPMHTCEHIVNRTMVNIFGCGRAVS-AHIERKKSKLDFALPKAPSVEDIEN 65

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  VN++IA++LPV T  + +E+A+       L    +D VR+V V     G +   LC
Sbjct: 66  IEKTVNEVIARHLPVTTEFITQEEAVGRFDLKRLPDNASDTVRIVRV-----GDYDECLC 120

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            G HV++T EI    I+S S  + GI RI   
Sbjct: 121 IGLHVTNTSEIGTFRIIS-SDYKDGIFRIRFK 151


>gi|83643616|ref|YP_432051.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
 gi|83631659|gb|ABC27626.1| predicted metal-dependent Hydrolase related to alanyl-tRNA
           synthetase HxxxH domain [Hahella chejuensis KCTC 2396]
          Length = 212

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 30/220 (13%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
             S Q   +  ++T FYA +GGQ  D G   G     ++   +K+ + IF  + + E   
Sbjct: 19  VTSVQDAVITVEETIFYALSGGQESDHGTIGG----FRVISARKEEQEIF--YELPEDHA 72

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+    + +TID++ R +L   H A  L+       LG  V + G+ I  +  R D +  
Sbjct: 73  LQVGDPVEITIDWERRYRLMRLHFAAELVLELFYRKLG-RVDKVGAHIAEEKARIDFSWP 131

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + I+   L  I+ +   +I +N  +++   + EDA                         
Sbjct: 132 QSISPL-LPDIDADAQRLIDENRDIISAF-SDEDAERRYWR------------------- 170

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                +   CGGTH++ TGE+  +  +   ++     R+E
Sbjct: 171 -VEGFAEVPCGGTHLTRTGEVGRIS-MKRKNVGKDKERVE 208


>gi|154311339|ref|XP_001554999.1| hypothetical protein BC1G_06522 [Botryotinia fuckeliana B05.10]
 gi|150850919|gb|EDN26112.1| hypothetical protein BC1G_06522 [Botryotinia fuckeliana B05.10]
          Length = 272

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 20/246 (8%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-----GIRLQITDV 546
           V A+    +   +  S  +  ++ D T FY + GGQ  DTG    +         ++  V
Sbjct: 28  VSALSVPDQAFLKDSSEIENAIITDSTIFYVQGGGQPYDTGTMTSEVTDKANSIFEVKSV 87

Query: 547 QKKAEGIFVHH----AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH----HALS 598
           ++ A+G  + H      V          +   ID + R   S  H+A H+L       + 
Sbjct: 88  RQPAQGSQILHLGRFVPVGTPHFENGEEVHQHIDAEKRNLYSRFHTAGHILSLAILALVR 147

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             + S ++++ +   PD     V     I      +I+   ++ +    PV     + E+
Sbjct: 148 EGVLSPLTESKASHYPDSA--AVVFGGSIEGKHKDAIQAKTDEFVKLARPVSIHWWSMEE 205

Query: 659 AIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
                +         D  V    VE E  G +    CGGTHV   G++  + +   S   
Sbjct: 206 VREKCSGVTEDFALPDGEVMARVVEMEGLGSY---PCGGTHVHDCGQVGKIEVKKISR-S 261

Query: 718 AGIRRI 723
            G+ R+
Sbjct: 262 KGLTRV 267


>gi|265764262|ref|ZP_06092830.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|263256870|gb|EEZ28216.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16]
          Length = 154

 Score = 99.0 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+A HLL+  +    G   S+N + I     + D       T
Sbjct: 1   MEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPTCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++ +IE+ VN+ I ++LPV    M  E+A +    + L    ++ +R+V +     G 
Sbjct: 60  EEQIHAIEEKVNEAIDRHLPVTCEFMTHEEAKSIVDLSKLPENASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HV +T EI L  I+S
Sbjct: 115 YDACACIGQHVENTSEIGLFKIIS 138


>gi|2065021|emb|CAA73145.1| alanyl t-RNA synthetase [Arabidopsis thaliana]
          Length = 251

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 47/253 (18%)

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---Q 738
           E  +  + SS  CGGTH+++T E     ++SE  I  GIRR+ A+T + A   L      
Sbjct: 1   ENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLL 60

Query: 739 DEKLKSLA-----------SFLKVSQG----------NVVGRVEEIWEEYRKLQLIHAKR 777
           + +++  +           S LK              ++  ++  +  E RK Q   A++
Sbjct: 61  EREVEDASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQ 120

Query: 778 KLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            L+ +V+       S         +  +   +D+  ++  +  + +K    I++      
Sbjct: 121 NLKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDES 180

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP----------HMAQSGGPNG 882
             KA V   V E   D+F  +D+       LG       P           +A   G + 
Sbjct: 181 TNKAVVCAGVPEK-SDQFKPLDVTEWLTTALG-------PLKGRCGKGKGGLASGQGTDA 232

Query: 883 NKADQAIAGVASF 895
            +   A+   +SF
Sbjct: 233 FQVQAALDMASSF 245


>gi|34495790|ref|NP_900005.1| alanyl-tRNA synthetase-like protein [Chromobacterium violaceum ATCC
           12472]
 gi|34101646|gb|AAQ58014.1| probable alanyl-tRNA synthetase related protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 214

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 34/222 (15%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
             V G++  +   +T FYA +GGQ  D+G   G  +RL       + +G  + + +    
Sbjct: 20  SRVDGER--MWLAETIFYAFSGGQESDSGRIAGHPVRLA------ERQGADIAYTLDAGH 71

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATH-LLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L+   + ++ ID+  R +L   H A   +L      + G  V + G+ I  D  R D  
Sbjct: 72  GLQAGDAAMVEIDWPRRYRLMRLHFAAELVLEVICRQVDG--VEKIGAHIAEDKARIDFA 129

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
              PIT   L  I      +I  +LP+V+     ++A       L G             
Sbjct: 130 LDLPITPL-LADIAAAAQRLINDDLPIVSAF--SDEAAGRRYWELPG------------- 173

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                  +   CGGTH+  +GE+  +  +   +I  G  R+E
Sbjct: 174 ------FARVPCGGTHLKRSGEVGRIA-LKRRNIGKGKERVE 208


>gi|163759477|ref|ZP_02166562.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162283074|gb|EDQ33360.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 237

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 24/248 (9%)

Query: 493 KAIVQQGEIVEEAVSG-----QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT--D 545
           KA+  +   +  A +      +   ++ DQT FYA +GGQ GDTG          I    
Sbjct: 2   KALFVEDAYLSTAEARVTTVREDGGIMLDQTCFYATSGGQPGDTGFLERTNGEKIIIAGT 61

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-STILGSH 604
           V  +++   +H  I   G     +  V+ ID+            T +    L ST+ G  
Sbjct: 62  VTGESKSEIIH--IPAPGRSARAVRAVMHIDWSG---------GTLMRCTPLPSTLGGLP 110

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           +  +G+ ++    R D   S+ I  AE   +   + +++  N P+ T+ ++ +D  A+  
Sbjct: 111 LPDHGAAVSETDSRIDFDMSETIDKAE---VTAKLMELVNANHPIFTQWISEDDLAANPD 167

Query: 665 AALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                       + R+  V   +G    S  CGGTHVS T E+  ++I          RR
Sbjct: 168 LVKSKNVRPPRGQDRIRLVCIGEGSAIDSQPCGGTHVSETAEVGEIHIGKIEKKGRENRR 227

Query: 723 IEAITGQR 730
                G  
Sbjct: 228 FRIRFGPA 235


>gi|83594299|ref|YP_428051.1| alanyl-tRNA synthetase related protein [Rhodospirillum rubrum ATCC
           11170]
 gi|83577213|gb|ABC23764.1| alanyl-tRNA synthetase related protein [Rhodospirillum rubrum ATCC
           11170]
          Length = 214

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 30/215 (13%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           EV+  +T  YA +GGQ  D G     G R  +   +K  +G+ + + +     L     +
Sbjct: 26  EVMVGETILYAFSGGQESDHGTI---GGR-PVLGARK--DGLTILYDLGPDHGLSPGDPV 79

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            L +D+  R +L   H A  ++   +    G  + + G+ I PD  R D T    I    
Sbjct: 80  GLVLDWSRRYRLMRLHFAAEIILELVMRDFGP-LEKTGAHIAPDKARIDFTWEGSIAPIF 138

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              +E +   +IA++LP++T     ++A                 R   +E       + 
Sbjct: 139 PSLLESSG-AVIARDLPIITAF--SDEASQR--------------RYWEIEG-----FAR 176

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             CGGTH   TGEI  L  +   +I  G  RIE +
Sbjct: 177 VPCGGTHPRRTGEIGPLA-LKRKNIGKGRERIEVL 210


>gi|298482854|ref|ZP_07001037.1| alanyl-tRNA synthetase family protein [Bacteroides sp. D22]
 gi|298271054|gb|EFI12632.1| alanyl-tRNA synthetase family protein [Bacteroides sp. D22]
          Length = 158

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTYGCPRSRN-AHIERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIE+ VN+ I+QNLPV    M  E A      + L    +  +R+V +     G 
Sbjct: 60  AEQIQSIEETVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEMGTFKIIS 138


>gi|255691526|ref|ZP_05415201.1| alanyl-tRNA synthetase family protein [Bacteroides finegoldii DSM
           17565]
 gi|260622917|gb|EEX45788.1| alanyl-tRNA synthetase family protein [Bacteroides finegoldii DSM
           17565]
          Length = 158

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIE+ VN+ I+QNLPV    M  E A      + L    ++ +R+V +     G 
Sbjct: 60  AEQIQSIENKVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEVGTFKIIS 138


>gi|167764447|ref|ZP_02436568.1| hypothetical protein BACSTE_02831 [Bacteroides stercoris ATCC
           43183]
 gi|167697116|gb|EDS13695.1| hypothetical protein BACSTE_02831 [Bacteroides stercoris ATCC
           43183]
          Length = 582

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+  H+++  +  + G   S + + I     + D   +   T
Sbjct: 428 MEQQAKLNEHNKQEYPPMHTTEHIINQTMIRLFGCGRSVS-AHIERKKSKLDYRLNACPT 486

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +++S+E  VN++IA++LPV T  + + +A        L    ++ VR+V V     G 
Sbjct: 487 EEQIESLEKAVNEVIARHLPVTTEFIAQAEAKGRFDLERLPEDASETVRIVKV-----GD 541

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIR 721
           +   LC GTHV +T EI    I+S    E S R  +R
Sbjct: 542 YDECLCIGTHVVNTSEIGTFKIISHDWDEESKRWRMR 578


>gi|150006475|ref|YP_001301219.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294775423|ref|ZP_06740938.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides vulgatus PC510]
 gi|149934899|gb|ABR41597.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|294450743|gb|EFG19228.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides vulgatus PC510]
          Length = 152

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +++  N+++    H+  H+++  +  + G   + + + I     + D         A++ 
Sbjct: 5   SLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQTCPEEADII 63

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V     G +   L
Sbjct: 64  RIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----GDYDECL 118

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           C G HV +T EI    I+S    + GI R+   
Sbjct: 119 CIGQHVKNTSEIGTFKIISHD-YKDGIFRMRFK 150


>gi|295083903|emb|CBK65426.1| Alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A]
          Length = 158

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIE+ VN+ I+QNLPV    M  E A      + L    +  +R+V +     G 
Sbjct: 60  AEQIQSIEETVNEAISQNLPVTVEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEMGTFKIIS 138


>gi|224827097|ref|ZP_03700194.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
 gi|224600763|gb|EEG06949.1| Threonyl/alanyl tRNA synthetase SAD [Lutiella nitroferrum 2002]
          Length = 214

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 30/218 (13%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           VV + T ++AE+GGQ  DTG   G     ++   +   +G  + + +    +L    ++ 
Sbjct: 27  VVLEATLYFAESGGQESDTGTIGG----YRVLAAR--WQGRDLVYTLPPGHVLEEGDTVT 80

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID+  R  L   H A  ++   ++  L + + + G+ I  D  R D T  +P+T   L
Sbjct: 81  VEIDWPRRYALMRLHFAAEIVLELVTQRLPA-IGKIGAHIGEDKARIDFTWHEPLTPL-L 138

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +      +I  + P+V+   +          A  G                       
Sbjct: 139 PELMREAQAVIDADAPIVSAFSDEAAERRYWEVAGFG---------------------RV 177

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
            CGGTH+  TGE+ +L  +   ++ +G  RIE     R
Sbjct: 178 PCGGTHLERTGEVGVLR-LKRKNVGSGKERIEIYAAPR 214


>gi|153806680|ref|ZP_01959348.1| hypothetical protein BACCAC_00950 [Bacteroides caccae ATCC 43185]
 gi|149131357|gb|EDM22563.1| hypothetical protein BACCAC_00950 [Bacteroides caccae ATCC 43185]
          Length = 155

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSSPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + ++++IE+ VN++I QNLPV    M  E A      + L    ++ +R++ +     G 
Sbjct: 60  AEQIQAIENKVNEVINQNLPVTIEFMTHEQAKNIVDLSKLPKDASETLRIIRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS T E+ +  I+S
Sbjct: 115 YDACACIGAHVSHTSEVGIFKIIS 138


>gi|29345976|ref|NP_809479.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337870|gb|AAO75673.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 158

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+A HLL+  +    G   S+N + I     + D       T
Sbjct: 1   MEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILPTCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            AE+++IED VN++I+QNLPV    M  E A      + L    ++ +R++ +     G 
Sbjct: 60  DAEIQAIEDKVNEVISQNLPVTVEFMTHEQAKGIVDLSKLPADASETLRIIRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEVGTFKIIS 138


>gi|78066086|ref|YP_368855.1| threonyl-tRNA synthetase [Burkholderia sp. 383]
 gi|123756187|sp|Q39H55|SYT_BURS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77966831|gb|ABB08211.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           sp. 383]
          Length = 635

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSAVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + +++ ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQELVKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|284046279|ref|YP_003396619.1| threonyl/alanyl tRNA synthetase SAD [Conexibacter woesei DSM 14684]
 gi|283950500|gb|ADB53244.1| Threonyl/alanyl tRNA synthetase SAD [Conexibacter woesei DSM 14684]
          Length = 255

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 16/207 (7%)

Query: 527 QLGDTGCAIGDGIRLQIT---------DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           Q  D G    D    Q+T         D    A G +    +++         L   +D+
Sbjct: 51  QPADHGTLRSDAGVWQVTGAKLARDDSDPAFPAAGAWH---LLDGEAPAAGTELEGELDW 107

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R +L   H+A H+L   +    G+ V+  G+ + P   R D      ++   ++ +E 
Sbjct: 108 DRRYELMRTHTALHILCAVVWRDYGAKVT--GANMEPLRGRMDFEFD-ALSGEFVRELEQ 164

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  +    P     + R DA                   V       G+   A  GGT
Sbjct: 165 KVNAEVDAARPTRVDFLPRADADRDPELIRNKVSLLPPSITVVRVVGIEGLDLQA-DGGT 223

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIE 724
           HV++T E+  + + S  S     +R+E
Sbjct: 224 HVANTREVGRIALPSYKSKGKINKRVE 250


>gi|167950022|ref|ZP_02537096.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 70

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892
             K +++  VT+DL  R  A DL +L A+ + GG GGGRP MAQ+GG + +   QA+A V
Sbjct: 2   GDKVALVSGVTKDLTGRMKAGDLVKLVAEKI-GGRGGGRPDMAQAGGNDPSALPQALALV 60

Query: 893 ASFLK 897
             +++
Sbjct: 61  PGWVE 65


>gi|149183677|ref|ZP_01862091.1| alanyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148848625|gb|EDL62861.1| alanyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 73

 Score = 97.5 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 1  MSNV--SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58
          M N+  + IR  FLEFF++ GH + PS+SL+P  DP+L++ NSG+   K  F G+  P  
Sbjct: 1  MKNLTGAEIRRMFLEFFKEKGHGVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQN 60

Query: 59 QAVTTVQKCVRA 70
            +   QK +R 
Sbjct: 61 PRIVNAQKSIRT 72


>gi|237719437|ref|ZP_04549918.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|293370234|ref|ZP_06616794.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CMC 3f]
 gi|299146201|ref|ZP_07039269.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_23]
 gi|229451297|gb|EEO57088.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|292634731|gb|EFF53260.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CMC 3f]
 gi|298516692|gb|EFI40573.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_23]
          Length = 158

 Score = 97.5 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIED VN++I+QNLPV    M  E A      + L    ++ +R+V +     G 
Sbjct: 60  AEQIQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS T E+    I+S
Sbjct: 115 YDACACIGLHVSHTSEVGTFKIIS 138


>gi|212691330|ref|ZP_03299458.1| hypothetical protein BACDOR_00822 [Bacteroides dorei DSM 17855]
 gi|237712222|ref|ZP_04542703.1| alanyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237726368|ref|ZP_04556849.1| alanyl-tRNA synthetase [Bacteroides sp. D4]
 gi|212666083|gb|EEB26655.1| hypothetical protein BACDOR_00822 [Bacteroides dorei DSM 17855]
 gi|229434894|gb|EEO44971.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453543|gb|EEO59264.1| alanyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 152

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +++  N+++    H+  H+++  +  + G   + + + I     + D          ++ 
Sbjct: 5   SLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQTCPEETDIT 63

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V     G +   L
Sbjct: 64  RIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----GDYDECL 118

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           C G HV +T EI    I+S    + GI R+   
Sbjct: 119 CIGQHVKNTSEIGTFKIISYD-YKDGIFRMRFK 150


>gi|254881607|ref|ZP_05254317.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|319642992|ref|ZP_07997626.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|254834400|gb|EET14709.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|317385357|gb|EFV66302.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 152

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 7/153 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +++  N+++    H+  H+++  +  + G   + + + I     + D         A++ 
Sbjct: 5   SLNDHNKQEYPPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQTCPEEADII 63

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE+ VN+++ +NLPV    +++E+AI       L  K ++ VR+V V     G +   L
Sbjct: 64  RIENTVNEVLRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----GDYDECL 118

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           C G HV +T EI    I+S    + GI R+   
Sbjct: 119 CIGQHVENTSEIGTFKIISHD-YKDGIFRMRFK 150


>gi|253568623|ref|ZP_04846034.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251842696|gb|EES70776.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 158

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+A HLL+  +    G   S+N + I     + D       T
Sbjct: 1   MEQQPQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILPTCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            AE+++IED VN+II+QNLPV    M  E A      + L    ++ +R++ +     G 
Sbjct: 60  DAEIQTIEDKVNEIISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIIRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+    I+S
Sbjct: 115 YDACACIGLHVSNTSEVGTFKIIS 138


>gi|171684143|ref|XP_001907013.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942032|emb|CAP67684.1| unnamed protein product [Podospora anserina S mat+]
          Length = 290

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 25/235 (10%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEG--IFVHHAIV----- 560
             + F  T F+ + GGQ  D G         +   +   +         +H         
Sbjct: 49  FVLTFPSTIFHPQGGGQPSDEGHITLTSPPSVAFSVISARHSITNPSQVLHLGFFAPSVP 108

Query: 561 ---ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E+ +      +  TI+   R   S  H+A H+L  A+  +L S +            
Sbjct: 109 PPDEQPLFTPGDQITQTINANLRNYHSRLHTAGHVLGSAVRHLLESQIEDFDELKASHFP 168

Query: 618 RFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
                  + +  ++ K  I++ VN+++A  +PV     + ED    G   L+    N   
Sbjct: 169 DSAACEFRGLIDSKWKEPIQEKVNELLAAKMPVEVEWWDEEDFRREGLERLIPRGKNGE- 227

Query: 677 RVVSVEYEDGGVHS--------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            +V  E  DGG              CGGTHV  T     + +        G  R+
Sbjct: 228 -LVKPENTDGGRWRVVRIVGAEVYPCGGTHVERTDLCGEVRVRKVGR-GKGCSRV 280


>gi|322696431|gb|EFY88223.1| threonyl/alanyl tRNA synthetase [Metarhizium acridum CQMa 102]
          Length = 279

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 29/238 (12%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-------GIRLQITDVQKKAEG--IFVHH 557
           +     VV  +T F+ + GGQ  D G             +  ++  V+  A      +H 
Sbjct: 45  ADDDFVVVTGETIFHPQGGGQPSDQGFMNWSPNGTTAADLSFRVEAVRMDAVNGSQVLHL 104

Query: 558 AIVERG----ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV---SQNGS 610
                      L+    +   +D + R   S  H+A H+L  A+ ++L + +    +  +
Sbjct: 105 GSFTTPAAASQLQPGDRVKQVLDVEKRLLYSRLHTAGHVLGSAVRSLLETEIPGFDELKA 164

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
              PD    +   +      E   I+  VN+ + +++PV       +D    G   L+  
Sbjct: 165 SHFPDSAACEFRGAIEGKWKEP--IQRRVNEYLERSMPVEIDFWTEQDFCREGLERLIPD 222

Query: 671 K-----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +       D+ RVV +   +        CGGTHV +T        V + +   GI R+
Sbjct: 223 RSLLPPGEDKFRVVRIVGAE-----VYPCGGTHVDTTDLCGETT-VKKIARSKGISRV 274


>gi|260174420|ref|ZP_05760832.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315922688|ref|ZP_07918928.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313696563|gb|EFS33398.1| alanyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 158

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIED VN++I+QNLPV    M  E A      + L    ++ +R+V +     G 
Sbjct: 60  AEQIQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS+T E+ +  I+S
Sbjct: 115 YDACACIGLHVSNTSEVDIFKIIS 138


>gi|198275260|ref|ZP_03207791.1| hypothetical protein BACPLE_01419 [Bacteroides plebeius DSM 17135]
 gi|198271843|gb|EDY96113.1| hypothetical protein BACPLE_01419 [Bacteroides plebeius DSM 17135]
          Length = 153

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   + + + I     + D   S+ ++
Sbjct: 1   MEQEIQLNAHNKQEYPPMHTCEHIINRTMVNLFGCGRAVS-AHIERKKSKLDFALSQALS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++  IE  VN++IA++LPV T  + +E+A        L    ++ VRVV V     G 
Sbjct: 60  EDDIARIETTVNEVIARHLPVTTEFITQEEATGRFDMKRLPEGASETVRVVHV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +   LC G HV +T EI    I+S      GI R+   
Sbjct: 115 YDECLCIGQHVENTSEIGTFKIISHD-FNDGIFRMRFK 151


>gi|240144247|ref|ZP_04742848.1| alanine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257203745|gb|EEV02030.1| alanine--tRNA ligase [Roseburia intestinalis L1-82]
          Length = 108

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFN 851
            V  ++  +  VD   L+ + D L++++  G+I+L   S E K +++++ T+  +    +
Sbjct: 1   GVKLLASAVDGVDMNGLRDLGDQLKEQLGEGVIVLAS-SCEGKVNLIVMATDAAMKQGAH 59

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           A +L +  A  +GGGGG GRP+MAQ+GG N     +AIA   + L+
Sbjct: 60  AGNLIKSIAGKVGGGGG-GRPNMAQAGGKNPAGILEAIAEAKTALE 104


>gi|196002279|ref|XP_002111007.1| hypothetical protein TRIADDRAFT_54509 [Trichoplax adhaerens]
 gi|190586958|gb|EDV27011.1| hypothetical protein TRIADDRAFT_54509 [Trichoplax adhaerens]
          Length = 234

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 38/213 (17%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEG--IFVHHAIVER 562
             ++  +V D T  + + GGQ  D G     G+ +   +  VQK ++      H     +
Sbjct: 30  DEEEYIIVVDNTVMHPQGGGQPADVGLIKNQGEDVVFHVHHVQKPSKEALFIEHVGKYSQ 89

Query: 563 GILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
             +R       +++ ID   RR  +  HSA HLL  AL  +  + +  +     PD    
Sbjct: 90  SSIRRFDVGDPVIMQIDEAKRRLHARLHSAGHLLDGALQNLGITELVGSKGYHFPDNPYV 149

Query: 620 DVTHSKPITSAELKSIEDNVND----IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           +   + P+   + + I   +N+    +IA+NLPV                      + + 
Sbjct: 150 EYIGNIPV--EKREEIVKLLNEETTKLIAKNLPVEVS-------------------HQEG 188

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           +R V++            CGGTHV S  EI  +
Sbjct: 189 LRYVNIAG------VKCPCGGTHVKSLKEIGKV 215


>gi|262274428|ref|ZP_06052239.1| alanyl-tRNA synthetase domain protein [Grimontia hollisae CIP
           101886]
 gi|262220991|gb|EEY72305.1| alanyl-tRNA synthetase domain protein [Grimontia hollisae CIP
           101886]
          Length = 241

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 77/216 (35%), Gaps = 4/216 (1%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +G   ++  V+   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGTAYRVYHVETTEEGIAHVLESHPLLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
               +  +  ID Q R   + +H+A HL+ H +   +  ++S       PD    ++  S
Sbjct: 83  ECGGLPCIQRIDIQRRLVNAKSHTAGHLISHIIEE-MDDNLSPAKGHHYPDDSYIELIDS 141

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +         + +     +    P   + +  + A       LL         +  +  +
Sbjct: 142 ERTNDTFSMELINKKIQSLVNQAPRTIQSIELDLAEVQSLRPLLSKFIPHSTHIRMIAID 201

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                +   CGGTHV+ST E+  L +      +  I
Sbjct: 202 G---FTPVPCGGTHVASTSELTGLQVTRIKRKKDRI 234


>gi|237738264|ref|ZP_04568745.1| metal-dependent hydrolase [Fusobacterium mortiferum ATCC 9817]
 gi|229420144|gb|EEO35191.1| metal-dependent hydrolase [Fusobacterium mortiferum ATCC 9817]
          Length = 252

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 41/239 (17%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI--RLQITDVQK------------ 548
            + +   +  +VFD+T  Y E GGQ+GD+G  I +     ++  D  K            
Sbjct: 18  AKLIEVNERGLVFDKTIAYPEGGGQIGDSGILIREKTKEEIEFLDTTKIKGRNIYLEDFP 77

Query: 549 --KAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-GSH 604
             K EG+ +HH  +     L      ++ ++ + R + +++HS  HL    L+ +  G  
Sbjct: 78  VIKVEGVIIHHINISLLNNLELGEEFIIKLNVEKRAKTTLHHSGLHLALMILANMREGID 137

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
               G+ IT    R D +  +  +  EL+ IED  N++I + L + +     E       
Sbjct: 138 KKIVGAKITDTYGRLDFSTEEKFSKEELQKIEDKCNELIQEKLEISSYHHTVE------- 190

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                   N+ +    ++Y       S  CGGTH  +T  +  +  V   +I     R+
Sbjct: 191 --------NEAIYWKCLDY-------SVPCGGTHCDNTKYLGKMK-VKRKNIGKTSERL 233


>gi|183597292|ref|ZP_02958785.1| hypothetical protein PROSTU_00539 [Providencia stuartii ATCC 25827]
 gi|188023309|gb|EDU61349.1| hypothetical protein PROSTU_00539 [Providencia stuartii ATCC 25827]
          Length = 220

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           ++E+    +   V      F+ + GGQ  D G      +R+     +K   G  + +   
Sbjct: 19  VLEKGQDDEGQWVALRDNIFHPQGGGQPADAGWINDQPVRI-----KKHPNGWIIAYLAP 73

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           ++  L    ++   ID   R+  +  H+  HLL   +    G    +         + F 
Sbjct: 74  DQN-LNVGDAVSAKIDKAQRQYHAALHTTGHLLSWEM-ACFGWKGQKGHHFPNESRVEFS 131

Query: 621 VTHSKPITSAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
                P    +L  + IE  VN  +  + PV             G   L      D V  
Sbjct: 132 AISDNPTPIEQLDEREIEALVNQRLHGDYPVSV--------EQRGELRLCRVSEGDEV-- 181

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                          CGGTHV S G+I    I S    + G+ RI
Sbjct: 182 --------------PCGGTHVDSLGKICQFVIKSM-KYKKGVLRI 211


>gi|169835921|ref|ZP_02869109.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 69

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 50/71 (70%), Gaps = 2/71 (2%)

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162
           K+ AI  AW+ +T+   L + RLY+TV++ D+EAF LW++   ++ ++I R   +DNFW 
Sbjct: 1   KKDAIAYAWEFVTQVLKLPKDRLYVTVHESDDEAFALWEQ--HIAKERIYRFGDHDNFWQ 58

Query: 163 MAETGPCGPCS 173
           M +TGPCGPCS
Sbjct: 59  MGDTGPCGPCS 69


>gi|326934189|ref|XP_003213176.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like [Meleagris
           gallopavo]
          Length = 475

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 105/252 (41%), Gaps = 15/252 (5%)

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSV 681
            +  +T+ +++++E +VN+ I + +PV  R +  +D  + +  +  L   +   VRVV +
Sbjct: 205 DTPSMTAEQMEALEQSVNEKIRERIPVTVRELAADDSEVETVESRGLPGDHTGPVRVVDI 264

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
           E  D     S +C GTHVS+  ++ ++ ++     +     +  + G R    +      
Sbjct: 265 EGID-----SNMCCGTHVSNLSDLQVIKLLCTEKGKKNKTNLVFLAGNRVLKSVEQSHRT 319

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
            K+L S LK   G  V  V+ +    + LQ  +      + V      K   V     ++
Sbjct: 320 EKALTSLLKNGPGEHVEAVKRLQSSVKLLQKNNLNLLRDVAVLIARDFKSRPVQSPLFVL 379

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK--ASVLIVVTEDLLDRFNAVDLARLS 859
              +       M+ +  +I S   +L     ++K     L+  + + ++     +L    
Sbjct: 380 HRKEGDS--EFMNIIANEIGSEETLLFLTVGDEKEAGLFLLAGSVEAVE-----NLGPRV 432

Query: 860 AKVLGGGGGGGR 871
           A++L G G G R
Sbjct: 433 AELLEGKGAGKR 444


>gi|255009584|ref|ZP_05281710.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 164

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++  H+A HLL+  +    G   S+N + I     + D       T  ++ +IE+ VN+ 
Sbjct: 25  IAPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPVCPTEEQIHAIEEKVNEA 83

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I ++LPV    M  E A +    + L    ++ +R+V +     G + +  C G HV +T
Sbjct: 84  INRHLPVTCEFMTHEKAKSIVDLSKLPENASEMLRIVRI-----GDYDACACIGQHVENT 138

Query: 703 GEIMLLYIVSESSIRAGIRRIEAI 726
            EI +  I+S      G  R+   
Sbjct: 139 SEIGIFKIISYD-YADGKLRLRFK 161


>gi|206577644|ref|YP_002237642.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
 gi|206566702|gb|ACI08478.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
          Length = 245

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 33/222 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGI-- 564
             V  QT FY + GGQLGD G  +         ++ +   ++K E I  +  I E G   
Sbjct: 38  YCVLSQTIFYPQGGGQLGDRGYLVLPNMLTSQQKMGVITTKRKDEEIRHYLDINEIGFDL 97

Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV-SQNGSCITPDGLRFDV 621
              +    +   +D+  R      HSA HL+H  L  + G  +     S +  +      
Sbjct: 98  LKKQAGQQVTAILDWDLRYHQMRIHSAVHLIHCILEQVTGHSIPYPVRSPLNDESGENHY 157

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                I    L+     +N+  +    + T  +  +                +  R+   
Sbjct: 158 QLLDYIDEDILEKATTELNEFCSSGHAIQTVNVPEQ---------------GNNFRIWKC 202

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                    S  CGGTHV  T EI +  I S   I+  + RI
Sbjct: 203 GRW------SIPCGGTHVKDTKEIGM--IFSTLKIKKNMTRI 236


>gi|134079925|emb|CAK41056.1| unnamed protein product [Aspergillus niger]
          Length = 296

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 18/240 (7%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-----GIRLQITDV 546
           V  + +  + + +  +  +  VV D T F+ + GGQ  DTG    D      +  ++  V
Sbjct: 28  VSKLPEADQALAKDSAEIEHAVVTDSTIFHVQGGGQPSDTGTMTTDVAPKADLIFEVKSV 87

Query: 547 QKKAEGIFVHH----AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL----HHALS 598
           ++ A+G  + H      V      +   +   +D + R   S  H+A H++    H    
Sbjct: 88  RQPAQGNQILHLGRFVPVGTTQFDSGEEVQQRVDAEKRNLHSRLHTAGHVMSLAIHALCR 147

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             +   V ++ +   P         +      EL  I+   ++ +    PV     + E+
Sbjct: 148 EGVLPPVKESKASHYPGSASVSFEGTLEGKHKEL--IQAKTDEFVRSASPVRIHWWSMEE 205

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                  A              VE E  G +    CGGTHV+    +  + +   S  + 
Sbjct: 206 LKEKCYVAEGFALPEGETLGRVVEMEGLGSY---PCGGTHVTDCSLVGKIEVKKISRSKG 262


>gi|67903426|ref|XP_681969.1| hypothetical protein AN8700.2 [Aspergillus nidulans FGSC A4]
 gi|40741059|gb|EAA60249.1| hypothetical protein AN8700.2 [Aspergillus nidulans FGSC A4]
          Length = 862

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 99/303 (32%), Gaps = 58/303 (19%)

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L  +       +V   K   +L +    + + I       +E  +     V   QT FY
Sbjct: 568 YLDDATLCTTSTQVTSSKSFANLNDEEKRLARNISSGA---DEDRTEDIFAVTTQQTVFY 624

Query: 522 AEAGGQLGDTGCA---------------IGDG--------IRLQITDVQKKAEGIFVHHA 558
            + GGQ  DTG                 I +G           Q+  V+K ++G  +H  
Sbjct: 625 PQGGGQPSDTGIIAISLCLDSRMNAEASISEGPNANGEADGIFQVLLVRKTSDGKILHFG 684

Query: 559 I------VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS----------TILG 602
                  +++        + L ID   R   S  H+A H+L  A+            +  
Sbjct: 685 RFAKVPLIKQPYFTAHQPVTLHIDAAKRNYHSRLHTAGHVLGLAMRLLSTTLGERKKVKA 744

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
           +H  +         L       KP+  A++  I D        +L V     + E+    
Sbjct: 745 NHFPREACLEFEGLLY---NEHKPLIQAKVDEITDM-------DLDVRISWWSEEEVERR 794

Query: 663 GAA--ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                 + G +     RV   E    G   +  CGGTHV ST     + I   S  + GI
Sbjct: 795 RDELDMVEGREVGGMGRVRVAEI---GDLDANPCGGTHVVSTKRTGRIVIRKISR-QKGI 850

Query: 721 RRI 723
            R+
Sbjct: 851 SRV 853


>gi|78063833|ref|YP_373741.1| metal-dependent hydrolase [Burkholderia sp. 383]
 gi|77971718|gb|ABB13097.1| metal-dependent hydrolase [Burkholderia sp. 383]
          Length = 226

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 32/223 (14%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           V   V G +V+V  D+T F+A +GGQ  D G   G      +    K+  G+ + + +  
Sbjct: 18  VVSHVDGDRVQV--DETIFFAFSGGQESDAGSLGG----YPVIRADKQ--GLDIVYTLPH 69

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L     +   ID+  R +L   H A  ++   +  +    + + G+ I  D  R D 
Sbjct: 70  DHSLSVGDRVTWHIDWARRYRLMRLHFAAEMVLQLVYRLRPG-IERIGAHIGQDKARIDF 128

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +       IE    D+  ++L +VT   + +                 + R  +V
Sbjct: 129 ASDTSVAPL-FPEIESAAADLSKRDLRIVTDFSDVDA----------------QRRFWTV 171

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           +       ++  CGGTH +STGEI +L  +   +   G  RIE
Sbjct: 172 DG-----FATMACGGTHPASTGEIGMLT-LKRRNTGKGKERIE 208


>gi|148546393|ref|YP_001266495.1| synthetase, putative [Pseudomonas putida F1]
 gi|148510451|gb|ABQ77311.1| metal-dependent hydrolase [Pseudomonas putida F1]
          Length = 262

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 85/247 (34%), Gaps = 43/247 (17%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--------------KAEGIFVHHA 558
           +    T  Y E GGQ  D G        ++   V+K              K  GI +H  
Sbjct: 37  IELLSTVAYPEGGGQEADFGTIELPVGTVRFVWVKKLYGSPIRLDGFKGGKLGGIIIHSL 96

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCIT 613
             +   L       M   +TID + R +L+++HSA+H L+ A   +         G  I 
Sbjct: 97  HPDDLHLLDEVTVGMPARVTIDIERRERLTLSHSASHFLYAAAIGLREELKQWTIGCHIK 156

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            D  RFD       T+ ++  IE   N++I  + P+                      Y 
Sbjct: 157 EDTARFDFLVEDAFTAEDVLEIERRANELIGCDAPI--------------------EHYA 196

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
            +    +  +   G+     CGGTH+ S   I  L  V    +  G  R+  +    A  
Sbjct: 197 VQGLEDARLWTYDGIEI--PCGGTHLDSPRRIGRLS-VKRKRLGKGKERLICVF-PEAEI 252

Query: 734 HLMGQDE 740
            L    E
Sbjct: 253 DLSTYHE 259


>gi|91781333|ref|YP_556540.1| putative alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|91693993|gb|ABE37190.1| Putative alanyl-tRNA synthetase [Burkholderia xenovorans LB400]
          Length = 213

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 32/225 (14%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561
           +   V G++V+V  + T F+A +GGQ  D G   G      +   +K   G+ + + +  
Sbjct: 18  IVSQVDGEQVQV--EATIFFAFSGGQESDCGSLAG----YPVIKAEKL--GLEIVYTLPH 69

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              L     +   ID++ R +L   H A  ++   +  +    + + G+ I  D  R D 
Sbjct: 70  DHSLSVGDCVTWRIDWERRYRLMRLHFAAEMVLQLVYRLRPG-IERIGAHIAQDKARIDF 128

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +       IE    D+ A++L ++T   + +                 + R   V
Sbjct: 129 ASDVSLAPL-FPEIESAAADLTARDLAILTDFSDVQT----------------QRRYWKV 171

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +       +   CGGTH  ST EI  +  +   +   G  RIE I
Sbjct: 172 DG-----FAMMACGGTHPKSTHEIGAVK-LKRKNTGRGKERIEVI 210


>gi|313147362|ref|ZP_07809555.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313136129|gb|EFR53489.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
          Length = 157

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++  H+A HLL+  +    G   S+N + I     + D       T  ++ +IE+ VN+ 
Sbjct: 18  IAPMHTAEHLLNATMVKTFGCPRSRN-AHIEKKKSKCDYELPVCPTEEQIHAIEEKVNEA 76

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I ++LPV    M  E A +    + L    ++ +R+V +     G + +  C G HV +T
Sbjct: 77  INRHLPVTCEFMTHEKAKSIVDLSKLPENASEMLRIVRI-----GDYDACACIGQHVENT 131

Query: 703 GEIMLLYIVSESSIRAGIRRIEAI 726
            EI +  I+S      G  R+   
Sbjct: 132 SEIGIFKIISYD-YADGKLRLRFK 154


>gi|254785570|ref|YP_003072999.1| threonyl-tRNA synthetase [Teredinibacter turnerae T7901]
 gi|259516754|sp|C5BSQ1|SYT_TERTT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237684404|gb|ACR11668.1| threonine--tRNA ligase [Teredinibacter turnerae T7901]
          Length = 637

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 23/235 (9%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVS 606
           K      V    V+ G    + + +  +  ++   L  I HS  HLL  A+ ++      
Sbjct: 33  KATLAGIVDGKEVDAGFTIEQDAALSIVTEKSPEGLEVIRHSTAHLLAQAVKSLFPEAQV 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  DG  +D  +S+  T  +L +IE  + ++  Q++PV  R++ R++A+A     
Sbjct: 93  TIGPVID-DGFYYDFAYSRAFTPEDLAAIEKKMTELSEQDIPVSRRVLPRDEAVAFF--R 149

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            +G  Y   +       ED  ++       LC G HV STG++    ++    +     R
Sbjct: 150 GIGEDYKAEIIESIPANEDLSLYKQGDFEDLCRGPHVPSTGKLKYFKLMK---VAGAYWR 206

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            +A            ++E L+ +      ++ ++   +  + E  ++      K+
Sbjct: 207 GDA------------KNEMLQRIYGTAWANKKDLKAYLHRLEEAEKRDHRKLGKK 249


>gi|221214904|ref|ZP_03587872.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
 gi|221165131|gb|EED97609.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD1]
          Length = 635

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSAVIDHDASLAIVTDKDPDGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFAYHRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPESDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|221197733|ref|ZP_03570779.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
 gi|221204709|ref|ZP_03577726.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221175566|gb|EEE07996.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2]
 gi|221181665|gb|EEE14066.1| threonyl-tRNA synthetase [Burkholderia multivorans CGD2M]
          Length = 635

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSAVIDHDASLAIVTDKDPDGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFAYHRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPESDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|161524952|ref|YP_001579964.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350300|ref|YP_001945928.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|238687005|sp|A9ABF9|SYT_BURM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160342381|gb|ABX15467.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334322|dbj|BAG43392.1| threonyl-tRNA synthetase [Burkholderia multivorans ATCC 17616]
          Length = 635

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSAVIDHDASLAIVTDKDPDGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFAYHRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPESDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|224371110|ref|YP_002605274.1| AlaS2 [Desulfobacterium autotrophicum HRM2]
 gi|223693827|gb|ACN17110.1| AlaS2 [Desulfobacterium autotrophicum HRM2]
          Length = 145

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSA H+L+  +  +       + + I     + D   ++ +T  EL  IE  VN +I  
Sbjct: 9   MHSAEHILNGTMDQLFNCGRCFS-AHIERKKSKCDYHFTRALTPEELIQIESQVNRVIRA 67

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           N+ V    +   +A      + L    +D +R+VS+     G + +  C GTHVS T E+
Sbjct: 68  NMKVTDTCIPMAEADKRFNLSRLPDGRSDEIRIVSI-----GDYDACPCIGTHVSETSEL 122

Query: 706 MLLYIVSESSIRAGIRRIEAI 726
               I   S  + G+ RI   
Sbjct: 123 GTFRIT-TSDFKDGVLRIRFK 142


>gi|167587363|ref|ZP_02379751.1| threonyl-tRNA synthetase [Burkholderia ubonensis Bu]
          Length = 635

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSAVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L+ IE  + +I  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYHRPFTPEDLEKIEKRMQEIAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|298387362|ref|ZP_06996915.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 1_1_14]
 gi|298260031|gb|EFI02902.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 1_1_14]
          Length = 162

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 6/130 (4%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++  H+A HLL+  +    G   S+N + I     + D       T AE+++IED VN++
Sbjct: 19  IAPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILPTCPTDAEIQAIEDKVNEV 77

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I+QNLPV    M  E A      + L    ++ +R++ +     G + +  C G HVS+T
Sbjct: 78  ISQNLPVTVEFMTHEQAKGIVDLSKLPADASETLRIIRI-----GDYDACACIGLHVSNT 132

Query: 703 GEIMLLYIVS 712
            E+    I+S
Sbjct: 133 SEVGTFKIIS 142


>gi|265751926|ref|ZP_06087719.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|263236718|gb|EEZ22188.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 157

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++  H+  H+++  +  + G   + + + I     + D          ++  IE+ VN++
Sbjct: 19  IAPMHTTEHVINRTMVNLFGCGRAIS-AHIERKKSKLDFALQTCPEETDITRIENTVNEV 77

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           + +NLPV    +++E+AI       L  K ++ VR+V V     G +   LC G HV +T
Sbjct: 78  LRRNLPVTMEFISQEEAIGRFDMKRLPEKASETVRIVKV-----GDYDECLCIGQHVKNT 132

Query: 703 GEIMLLYIVSESSIRAGIRRIEAI 726
            EI    I+S    + GI R+   
Sbjct: 133 SEIGTFKIISYD-YKDGIFRMRFK 155


>gi|313497476|gb|ADR58842.1| Synthetase, putative [Pseudomonas putida BIRD-1]
          Length = 262

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 85/248 (34%), Gaps = 45/248 (18%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--------------KAEGIFVHHA 558
           +    T  Y E GGQ  D G        ++   V+K              K  GI +H  
Sbjct: 37  IELLSTVAYPEGGGQEADFGTIELPVGTVRFVWVKKLYGSPIRLDGFKGGKLGGIIIHSL 96

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCIT 613
             +   L       M   +TID + R +L+++HSA+H L+ A   +         G  I 
Sbjct: 97  HPDDLHLLDEVTVGMPARVTIDIERRERLTLSHSASHFLYAAAIGLREELKQWTIGCHIK 156

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKY 672
            D  RFD       T+ ++  IE   N++I  + P+    +   EDA            Y
Sbjct: 157 EDTARFDFLVEDAFTAEDVLEIERRANELIGCDAPIEHYAVQGLEDARLW--------TY 208

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           N                    CGGTH+ S   I  L  V    +  G  R+  +    A 
Sbjct: 209 NGIEI---------------PCGGTHLDSPRRIGRLG-VKRKRLGKGKERLICVF-PEAE 251

Query: 733 SHLMGQDE 740
             L    E
Sbjct: 252 IDLSTYHE 259


>gi|330816669|ref|YP_004360374.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327369062|gb|AEA60418.1| Threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 635

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 22/223 (9%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSALIDRDASLAIVTDKDADGLEIIRHSTAHLLAYAVKELFPEAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++S+P T  +L+ IE  + ++  ++ PV  R+++RE+A        +G KY   +  
Sbjct: 104 YDFSYSRPFTPEDLEKIEKRMQELAKKDEPVSRRVVSREEAAEYF--RGIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                ++  ++S    + LC G HV STG++ +  ++    +     R            
Sbjct: 162 SIPSSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR------------ 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
              ++E+L+ +       + +    +  + E  ++     AK+
Sbjct: 207 GDSKNEQLQRIYGTAWAKKEDQEAYLHMLEEAEKRDHRKLAKQ 249


>gi|26987847|ref|NP_743272.1| synthetase, putative [Pseudomonas putida KT2440]
 gi|24982548|gb|AAN66736.1|AE016301_7 synthetase, putative [Pseudomonas putida KT2440]
          Length = 262

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 85/248 (34%), Gaps = 45/248 (18%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--------------KAEGIFVHHA 558
           +    T  Y E GGQ  D G        ++   V+K              K  GI +H  
Sbjct: 37  IELLSTVAYPEGGGQEADFGTIELPVGTVRFVWVKKLYGSPIRLEGFKGGKLGGIIIHSL 96

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCIT 613
             +   L       M   +TID + R +L+++HSA+H L+ A   +         G  I 
Sbjct: 97  HPDDLHLLDEVTVGMPARVTIDIERRERLTLSHSASHFLYAAAIGLREELKQWTIGCHIK 156

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKY 672
            D  RFD       T+ ++  IE   N++I  + P+    +   EDA            Y
Sbjct: 157 EDTARFDFLVEDAFTAEDVLEIERRANELIGCDAPIEHYAVQGLEDARLW--------TY 208

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           N                    CGGTH+ S   I  L  V    +  G  R+  +    A 
Sbjct: 209 NGIEI---------------PCGGTHLDSPRRIGRLG-VKRKRLGKGKERLICVF-PEAE 251

Query: 733 SHLMGQDE 740
             L    E
Sbjct: 252 IDLSTYHE 259


>gi|262173105|ref|ZP_06040782.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451]
 gi|261890463|gb|EEY36450.1| predicted metal-dependent hydrolase [Vibrio mimicus MB-451]
          Length = 243

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 10/219 (4%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +G+  ++   +   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGVAYRVHHTEMTEEGIAHVLESHPSLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +   M  V  ID + R   + +H+A HL+ H +   + +++S       PD    ++  S
Sbjct: 83  VSHGMQCVQRIDMKRRLINAKSHTAGHLISHIIEE-MDNNLSPAKGHHYPDDSYIELIES 141

Query: 625 KPITSAELKSIEDNVNDII---AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +     +  S+E  +N+ I       P   + ++ +         LL         +  +
Sbjct: 142 ERTN--DNFSVE-LINEQINLLVNRAPRAIQSIDLDLTEVQSLRPLLCKFIPQSTHIRMI 198

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             +     +   CGGTHV ST E+  L++      +  I
Sbjct: 199 AIDG---FTPVPCGGTHVVSTSELNGLHVTRIKRKKDRI 234


>gi|46115228|ref|XP_383632.1| hypothetical protein FG03456.1 [Gibberella zeae PH-1]
          Length = 269

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 14/233 (6%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKA--E 551
           +  +   + +  +     VV ++T F+ + GGQ  D G    +   R  +   +  A  +
Sbjct: 33  LEDENRELFKQGTDDDFAVVTEETIFHPQGGGQPSDIGTMTNESDTRFTVASARMDAVRD 92

Query: 552 GIFVHHAIVER-GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
           G  +H    E         ++   ID + R   S  H+A H+L  A++ +L   V     
Sbjct: 93  GQVLHFGKFESDKKFTEGDTVTTEIDVEKRLLYSRYHTAGHVLGSAVNHLLKDKVEGFEE 152

Query: 611 CITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                         + +   + K  I+  V++ IA  +PV     + ED   +G   L  
Sbjct: 153 LKASHFPDSASCEFQGLIEGKWKDPIQAKVDEFIAAKMPVEIEFWDEEDFRKNGLEHLTP 212

Query: 670 T----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                   ++ RVV +   +        CGGTH+ +T +     +   S  + 
Sbjct: 213 DASFVAPGEKFRVVRIVGAE-----VYPCGGTHIDTTDQCGETTVKKISRSKG 260


>gi|170732802|ref|YP_001764749.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
 gi|238688618|sp|B1K091|SYT_BURCC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169816044|gb|ACA90627.1| threonyl-tRNA synthetase [Burkholderia cenocepacia MC0-3]
          Length = 635

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|160885717|ref|ZP_02066720.1| hypothetical protein BACOVA_03721 [Bacteroides ovatus ATCC 8483]
 gi|156108530|gb|EDO10275.1| hypothetical protein BACOVA_03721 [Bacteroides ovatus ATCC 8483]
          Length = 158

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A HLL+  +    G   S+N + I     + D   S   T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           + +++SIED VN++I+QNLPV    M  E A      + L    ++ + +V +     G 
Sbjct: 60  AEQIQSIEDRVNEVISQNLPVTVEFMTHEQAKDIVDLSKLPADASETLHIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           + +  C G HVS T E+    I+S
Sbjct: 115 YDACACIGLHVSHTSEVGTFKIIS 138


>gi|294340009|emb|CAZ88373.1| threonine tRNA synthetase [Thiomonas sp. 3As]
          Length = 639

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 16/209 (7%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +     L  +  + +  D        I HS  HLL +A+  +        G  
Sbjct: 38  GKVDGKLVDTSYRLSQDAEVAIVTDKDAEGVEVIRHSTAHLLAYAVKDLYPDAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D  + +P T  +L+ IE  + ++  ++ PV  +++ R++A+    +  LG  
Sbjct: 98  I-ENGFYYDFAYKRPFTPEDLEKIEARMAELARKDEPVRRKVLPRDEAVDYFKS--LGEH 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +       ED  ++S      LC G HV STG + +  ++    +     R +   
Sbjct: 155 YKAEIIASIPAGEDVSLYSEGAFTDLCRGPHVPSTGRLKVFKLMK---VAGAYWRGDHRN 211

Query: 728 GQRARSHL------MGQDEKLKSLASFLK 750
            Q  R +         QD  L +LA   K
Sbjct: 212 AQLQRIYGTAWAKKEDQDAYLHALAEAEK 240


>gi|162218055|ref|YP_620875.2| threonyl-tRNA synthetase [Burkholderia cenocepacia AU 1054]
 gi|162227933|ref|YP_835120.2| threonyl-tRNA synthetase [Burkholderia cenocepacia HI2424]
 gi|254245609|ref|ZP_04938930.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
 gi|124870385|gb|EAY62101.1| Threonyl-tRNA synthetase, class IIa [Burkholderia cenocepacia
           PC184]
          Length = 635

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|206559848|ref|YP_002230612.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
 gi|238693072|sp|B4E7I6|SYT_BURCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198035889|emb|CAR51780.1| threonyl-tRNA synthetase [Burkholderia cenocepacia J2315]
          Length = 635

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|167035295|ref|YP_001670526.1| synthetase [Pseudomonas putida GB-1]
 gi|166861783|gb|ABZ00191.1| synthetase, putative [Pseudomonas putida GB-1]
          Length = 262

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 85/248 (34%), Gaps = 45/248 (18%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--------------KAEGIFVHHA 558
           +    T  Y E GGQ  D G        ++   V+K              K  GI +H  
Sbjct: 37  IELQSTVAYPEGGGQEADMGTIELPIGTVRFIWVKKLYGSPIRLEGFKGGKLGGIIIHSL 96

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCIT 613
             +   L       M   +TID + R +L+++HSA+H L+ A   +         G  I 
Sbjct: 97  HPDDLHLLDEVTAGMPARVTIDIERRERLTLSHSASHFLYAAAIGLREELKQWTIGCHIK 156

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKY 672
            D  RFD       T+ ++  IE   N++I    P+    ++  EDA            Y
Sbjct: 157 EDSARFDFLVEDAFTAEDVVEIERRANELIGCEAPIEHYAVDGLEDARLW--------TY 208

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
           N                    CGGTH+ S   I  L  V    +  G  R+  +    A 
Sbjct: 209 NGIEI---------------PCGGTHLDSPRRIGHLS-VRRKRLGKGKERLICVF-PEAE 251

Query: 733 SHLMGQDE 740
             L    E
Sbjct: 252 IDLSTYHE 259


>gi|212539444|ref|XP_002149877.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
 gi|210067176|gb|EEA21268.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224]
          Length = 275

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 28/244 (11%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQK--KA 550
           A+ +    V +    +   VV D+T F+ + GGQ  D G   G  G+   +T V+     
Sbjct: 32  ALDESNRQVFKTGGDEDYVVVVDKTIFHPQGGGQPSDVGTMTGKTGLIFTVTAVRMDVVC 91

Query: 551 EGIFVHHAIVERG-------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           +G  +H              I +    +   I+   R   S  H+A H+L  ++  ++  
Sbjct: 92  DGQVMHLGHFSTDDAASSVSIFKCGQIVEQVINVDKRLLYSRLHTAGHVLGASVRHLVKD 151

Query: 604 HVSQNGSCITPD-----GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            V               G  F              +I+  V++ IA  LPV     +  D
Sbjct: 152 EVKDFAELKASHFPGAAGCEFQGLIDGKWKD----AIQKKVDESIAAKLPVSVEWWDEID 207

Query: 659 AIASGAAALLGTK----YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
               G   LL         ++ R+V++   D        CGGTHV +T       +   +
Sbjct: 208 FRNKGLEYLLPDSSLVAPGEKFRMVNIAGLDA-----YPCGGTHVETTDLCGHTTVKKIT 262

Query: 715 SIRA 718
             + 
Sbjct: 263 RKQG 266


>gi|255014047|ref|ZP_05286173.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7]
          Length = 153

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  +
Sbjct: 1   MEQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E+A      + L    +D +R+V +     G 
Sbjct: 60  AEVMAEVEKKINEVIDRHLPVTIEFMPKEEAGGIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + +  C G+HV++T EI    +++      G  R+   
Sbjct: 115 YDACACIGSHVANTSEIGHFKLLNYD-YADGRLRLRFK 151


>gi|312217078|emb|CBX97027.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 275

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 18/224 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCA----IGDGIRLQITDVQKKAEGIFVH--HAIVERGI 564
             +    T F+A+ GGQ  DTG              I  V+K A  I      A V    
Sbjct: 52  YILTTPSTIFHAQGGGQPSDTGTIALASSPSTPTFHIHQVRKLAPTILHMGIFAPVPHTP 111

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL-----GSHVSQNGSCITPDGLRF 619
             T + +  TID   R   S  H+A H+L  A++ +         +    +   P     
Sbjct: 112 FPTGIQITQTIDVDKRILHSRLHTAGHILGLAINLLTASGALPPDLIDGKASHYPSAAFV 171

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           + T   P T+    +I+  V++++AQNLPV       ++A +   + ++G    D   V 
Sbjct: 172 EFTGLIPSTAK--SAIQAKVDELVAQNLPVGIHFWTEDEARSRC-SGVVGEVKGDADGVR 228

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
            V+  + G +    CGGTHV    E   + +      + G+ ++
Sbjct: 229 VVKIGEVGSY---PCGGTHVLRLAECGKVVVRGVKR-QKGVSKV 268


>gi|105892737|gb|ABF75902.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia AU 1054]
 gi|116647586|gb|ABK08227.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Burkholderia
           cenocepacia HI2424]
          Length = 618

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 28  VDTSTVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 86

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 87  YDFSYNRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 144

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 145 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 189


>gi|325528727|gb|EGD05797.1| threonyl-tRNA synthetase [Burkholderia sp. TJI49]
          Length = 635

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|262403255|ref|ZP_06079815.1| alanyl-tRNA synthetase domain protein [Vibrio sp. RC586]
 gi|262350754|gb|EEY99887.1| alanyl-tRNA synthetase domain protein [Vibrio sp. RC586]
          Length = 243

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 10/219 (4%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +G+  ++   +   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGVAYRVHHTETTEEGIAHVLESHPSLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +   M  +  ID + R   + +H+A HL+ H +   + +++S       PD    ++  S
Sbjct: 83  VCNGMPCIQRIDMKRRLINAKSHTAGHLISHIIEE-MDNNLSPAKGHHYPDDSYIELIES 141

Query: 625 KPITSAELKSIEDNVNDII---AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +     +  S+E  +N+ I       P   + +  + A       LL        ++  +
Sbjct: 142 ERTN--DNFSVE-LINEQINLLVNRAPRAIQSIELDLAEVQSLRPLLCKFIPQSTQIRMI 198

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             +     +   CGGTHV ST E+  L +      +  I
Sbjct: 199 AIDG---FTPVPCGGTHVVSTTELNGLQVTRIKRKKDRI 234


>gi|237713560|ref|ZP_04544041.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262406342|ref|ZP_06082891.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|229446282|gb|EEO52073.1| alanyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262355045|gb|EEZ04136.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22]
          Length = 162

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++  H+A HLL+  +    G   S+N + I     + D   S   T+ +++SIE+ VN+ 
Sbjct: 19  IAPMHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQIQSIEETVNEA 77

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I+QNLPV    M  E A      + L    +  +R+V +     G + +  C G HVS+T
Sbjct: 78  ISQNLPVTIEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GDYDACACIGLHVSNT 132

Query: 703 GEIMLLYIVS 712
            E+    I+S
Sbjct: 133 SEMGTFKIIS 142


>gi|170060840|ref|XP_001865979.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
 gi|167879216|gb|EDS42599.1| alanyl-tRNA synthetase domain-containing protein 1 [Culex
           quinquefasciatus]
          Length = 310

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 106/335 (31%), Gaps = 49/335 (14%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           + R      HS  HL+                S +  D        +K +T  +L  +E 
Sbjct: 2   ERRFDHMQQHSGQHLITAIFDR------EFEDSYVDLD--------AKDVTREQLDKVER 47

Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
             N +I     V   +   +D         A   L    +  +RVV+++  +     S +
Sbjct: 48  ICNQLIVDCTAVSVAVYQPDDPALKSDVTRATRGLPEDVSGPLRVVTIDGIE-----SNM 102

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C GTHV +  ++  +  ++          +  + G R    L    ++       L    
Sbjct: 103 CCGTHVRNLAQLQAIKFLNVEK-GKAKCLVHFLVGGRVLRKLTECYDREVQFNGLLNGGA 161

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSK 807
            + V  + ++    R +Q   + RK+   +  L   KI          +  H     DS 
Sbjct: 162 PSHVDLLRKLQTTVRSVQK--SSRKMSSELAQLEADKINQAPDPKPKFYTVHRTDGPDSD 219

Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            +   +  +  K+    + +   + +       +  +   +   A  L      +L  G 
Sbjct: 220 YINVFLRCV--KLPECFLFVTNAADDTGKGAGQMALQGRPEDIAA--LGDPICALLE-GK 274

Query: 868 GGGRPHMAQSGGP----NGNKADQAIAGVASFLKK 898
           G G+       GP      NK  + I      +++
Sbjct: 275 GNGK-------GPRYNAKVNKLKE-IDQCRKLIEE 301


>gi|90417311|ref|ZP_01225237.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
 gi|90330896|gb|EAS46159.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2207]
          Length = 642

 Score = 94.8 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 95/261 (36%), Gaps = 23/261 (8%)

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            +   ++ D   ++ D    +     +    G+     +    I++ + +L +  D  + 
Sbjct: 7   PDGSQRVFDNPVSVADVAADIGAGLAKATLAGVVNGQVVDASYIMQEDSTLAIVTDRSDE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I HS+ HLL  A+  +  +     G  I  DG  +D    +  T  +L++IE  + 
Sbjct: 67  ALDIIRHSSAHLLAMAVKQLFPAAQVTIGPVI-EDGFYYDFAFERAFTPEDLEAIEARMT 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           +++  +  +     +R++A+    +  +G +Y   +       E  G++       LC G
Sbjct: 126 ELVKADHGIAREEWDRDEAVEFFKS--IGEEYKAEIIASIPAGEPIGLYRQGDFIDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV ST ++    +     +     R                +E L+ +      ++  +
Sbjct: 184 PHVPSTAKLPAFKLTK---VAGAYWR------------GDSNNEMLQRIYGTAWTNKKEL 228

Query: 757 VGRVEEIWEEYRKLQLIHAKR 777
              +  + E  ++      K+
Sbjct: 229 KAYINRLAEAEKRDHRKINKK 249


>gi|134295547|ref|YP_001119282.1| threonyl-tRNA synthetase [Burkholderia vietnamiensis G4]
 gi|166223329|sp|A4JDU4|SYT_BURVG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134138704|gb|ABO54447.1| Ser-tRNA(Thr) hydrolase [Burkholderia vietnamiensis G4]
          Length = 635

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPEAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  +++P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFAYNRPFTPEDLEKIEKRMQELAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|150007326|ref|YP_001302069.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262382100|ref|ZP_06075238.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298375313|ref|ZP_06985270.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_19]
 gi|149935750|gb|ABR42447.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|262297277|gb|EEY85207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298267813|gb|EFI09469.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 3_1_19]
          Length = 153

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  +
Sbjct: 1   MKQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E+A      + L    +D +R+V +     G 
Sbjct: 60  AEVMAEVEKKINEVIDRHLPVTIEFMPKEEAGDIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + +  C G+HV++T EI    +++      G  R+   
Sbjct: 115 YDACACIGSHVANTSEIGHFKLLNYD-YADGRLRLRFK 151


>gi|90407604|ref|ZP_01215785.1| Predicted metal-dependent hydrolase [Psychromonas sp. CNPT3]
 gi|90311307|gb|EAS39411.1| Predicted metal-dependent hydrolase [Psychromonas sp. CNPT3]
          Length = 241

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 79/213 (37%), Gaps = 10/213 (4%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
           V V  D T FY + GGQ  D G  I DG   Q+   +   EGI          +  T   
Sbjct: 29  VAVYCDNTIFYPQGGGQPCDLGVFIIDGCAHQVYHTETTVEGISHMLKSHPSLLTCTGKQ 88

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            +  ID Q R   +  H+A HL+ H + T+   ++S       P+G   ++  SK     
Sbjct: 89  CIQHIDIQRRLFNAKLHTAGHLISHIVETLDH-NLSPVKGHHYPNGSYIEMIESKKTNDT 147

Query: 631 ELKSIEDNVNDII---AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
            L      +N+ I       P   +    + A       LL        R+  +  +   
Sbjct: 148 FLVE---WINEKIDAFVDTSPRKIQSFELDLAEVKSLRPLLSPFIPQSTRIRMIAVDG-- 202

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             +   CGGTHV+ T ++  L +      +  I
Sbjct: 203 -FTPVPCGGTHVNCTSKLKGLRVTRIKRKKNRI 234


>gi|171318442|ref|ZP_02907597.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
 gi|171096356|gb|EDT41258.1| threonyl-tRNA synthetase [Burkholderia ambifaria MEX-5]
          Length = 635

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + +L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDAALAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + +I  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQEIAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|257139340|ref|ZP_05587602.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 593

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 40  VDTSALIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFY 98

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L++IE  + ++  ++ PV  R+++R++A++   +  +G KY   +  
Sbjct: 99  YDFSYHRPFTPEDLEAIEKRMQELAKRDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIE 156

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 157 SIPASDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 201


>gi|209527290|ref|ZP_03275800.1| alanyl-tRNA synthetase, probable [Arthrospira maxima CS-328]
 gi|209492278|gb|EDZ92623.1| alanyl-tRNA synthetase, probable [Arthrospira maxima CS-328]
          Length = 214

 Score = 94.8 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 72/216 (33%), Gaps = 31/216 (14%)

Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           G K  V  D+T F+ + GGQ  D G   G    + +  V +  + +  +   VE      
Sbjct: 26  GDKPFVRLDRTLFHPQGGGQKADKGTISG----VSVVHVDQSNDEVNHYLETVES--FTV 79

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              + + +D   R      H A HL+   +  I    V   G    P   R ++T + P 
Sbjct: 80  GQQVEMKVDETWRLINGKYHLAGHLIASLMENIFPG-VQAMGGHHWPGEARIELTGNLPN 138

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
                + +   +   I  +LPV                        D     S+     G
Sbjct: 139 IEEVNELLSAALTKAIDADLPVSIC--------------------GDPFSNRSIAI---G 175

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
              +  CGGTH  S G +  + I     I+    R+
Sbjct: 176 DFMAVPCGGTHPESLGVLGKVEITKL-KIKKDKLRV 210


>gi|296135845|ref|YP_003643087.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
 gi|295795967|gb|ADG30757.1| threonyl-tRNA synthetase [Thiomonas intermedia K12]
          Length = 639

 Score = 94.8 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 16/209 (7%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +     L  +  + +  D        I HS  HLL +A+  +        G  
Sbjct: 38  GKVDGKLVDTSYRLSQDAEVAIVTDKDAEGVEVIRHSTAHLLAYAVKDLYPDAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D  + +P T  +L+ IE  + ++  ++ PV  +++ R++A+    +  LG  
Sbjct: 98  I-ENGFYYDFAYKRPFTPEDLEKIEVRMAELARKDEPVRRKVLPRDEAVDYFKS--LGEH 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +       ED  ++S      LC G HV STG + +  ++    +     R +   
Sbjct: 155 YKAEIIASIPAGEDVSLYSEGAFTDLCRGPHVPSTGRLKVFKLMK---VAGAYWRGDHRN 211

Query: 728 GQRARSHL------MGQDEKLKSLASFLK 750
            Q  R +         QD  L +LA   K
Sbjct: 212 AQLQRIYGTAWAKKEDQDAYLHALAEAEK 240


>gi|170701132|ref|ZP_02892106.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133954|gb|EDT02308.1| threonyl-tRNA synthetase [Burkholderia ambifaria IOP40-10]
          Length = 635

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + +L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDAALAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + +I  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQEIAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQTDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|254252558|ref|ZP_04945876.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
 gi|124895167|gb|EAY69047.1| Threonyl-tRNA synthetase [Burkholderia dolosa AUO158]
          Length = 635

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDHDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L+ IE  + ++  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFAYHRPFTPEDLEKIEKRMQELAKKDEPVARRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPESDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|118381467|ref|XP_001023894.1| hypothetical protein TTHERM_00473110 [Tetrahymena thermophila]
 gi|89305661|gb|EAS03649.1| hypothetical protein TTHERM_00473110 [Tetrahymena thermophila
           SB210]
          Length = 253

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 86/207 (41%), Gaps = 17/207 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           ++F++T F+ + GGQ  D G    +G ++ +  +    E   + H + ++  ++    + 
Sbjct: 38  ILFEKTIFHPQGGGQPSDNGFIEVNGEQIPVKKLIYIREQELIFHQVEKKDCIKENQEVR 97

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-------K 625
           + ID   RRQ  + HS  HL+  A++ + G            DG   + T +       +
Sbjct: 98  MQIDENFRRQNVLLHSGGHLIDVAVNRL-GYEWEAGKGYHFIDGPYVEYTVNKWEEGSQE 156

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEY 683
            +     + +E  + +   +N P + +I   ++A      +   T   +   +R V +  
Sbjct: 157 KLKDQINQELEKILTEGSPEN-PSICKIYEYDEAKKE--ISNFPTYLPEGINIRWVKLNK 213

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            D G      CGGTHV +  +   + +
Sbjct: 214 LDPG----CPCGGTHVKNVSDFKKVVV 236


>gi|53719558|ref|YP_108544.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|53725296|ref|YP_102787.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76810857|ref|YP_333290.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121600801|ref|YP_992866.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124385818|ref|YP_001026205.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10229]
 gi|126441516|ref|YP_001058752.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 668]
 gi|126449349|ref|YP_001080524.1| threonyl-tRNA synthetase [Burkholderia mallei NCTC 10247]
 gi|126453502|ref|YP_001066005.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|134282197|ref|ZP_01768902.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|167003090|ref|ZP_02268880.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|167719848|ref|ZP_02403084.1| threonyl-tRNA synthetase [Burkholderia pseudomallei DM98]
 gi|167738851|ref|ZP_02411625.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 14]
 gi|167816071|ref|ZP_02447751.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 91]
 gi|167824445|ref|ZP_02455916.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 9]
 gi|167845979|ref|ZP_02471487.1| threonyl-tRNA synthetase [Burkholderia pseudomallei B7210]
 gi|167894556|ref|ZP_02481958.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 7894]
 gi|167902959|ref|ZP_02490164.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
 gi|167911196|ref|ZP_02498287.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 112]
 gi|167919220|ref|ZP_02506311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei BCC215]
 gi|217423341|ref|ZP_03454842.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|226199711|ref|ZP_03795264.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237812016|ref|YP_002896467.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238562605|ref|ZP_04610138.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242317788|ref|ZP_04816804.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|254177492|ref|ZP_04884147.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|254180004|ref|ZP_04886603.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|254188582|ref|ZP_04895093.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|254197889|ref|ZP_04904311.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|254199739|ref|ZP_04906105.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|254206061|ref|ZP_04912413.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|254259413|ref|ZP_04950467.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
 gi|254297839|ref|ZP_04965292.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|254358432|ref|ZP_04974705.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|73919776|sp|Q62KI2|SYT_BURMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919777|sp|Q63TM2|SYT_BURPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771913|sp|Q3JT13|SYT_BURP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223324|sp|A3MJT8|SYT_BURM7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223325|sp|A2S2N6|SYT_BURM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223326|sp|A1V3R3|SYT_BURMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223327|sp|A3NUI4|SYT_BURP0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223328|sp|A3N8T1|SYT_BURP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52209972|emb|CAH35944.1| threonyl-tRNA synthetase [Burkholderia pseudomallei K96243]
 gi|52428719|gb|AAU49312.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 23344]
 gi|76580310|gb|ABA49785.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1710b]
 gi|121229611|gb|ABM52129.1| threonyl-tRNA synthetase [Burkholderia mallei SAVP1]
 gi|124293838|gb|ABN03107.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10229]
 gi|126221009|gb|ABN84515.1| threonine--tRNA ligase [Burkholderia pseudomallei 668]
 gi|126227144|gb|ABN90684.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1106a]
 gi|126242219|gb|ABO05312.1| threonine--tRNA ligase [Burkholderia mallei NCTC 10247]
 gi|134246235|gb|EBA46324.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|147749335|gb|EDK56409.1| threonyl-tRNA synthetase [Burkholderia mallei FMH]
 gi|147753504|gb|EDK60569.1| threonyl-tRNA synthetase [Burkholderia mallei JHU]
 gi|148027559|gb|EDK85580.1| threonyl-tRNA synthetase [Burkholderia mallei 2002721280]
 gi|157806992|gb|EDO84162.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 406e]
 gi|157936261|gb|EDO91931.1| threonyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237]
 gi|160698531|gb|EDP88501.1| threonyl-tRNA synthetase [Burkholderia mallei ATCC 10399]
 gi|169654630|gb|EDS87323.1| threonyl-tRNA synthetase [Burkholderia pseudomallei S13]
 gi|184210544|gb|EDU07587.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 1655]
 gi|217393199|gb|EEC33220.1| threonine--tRNA ligase [Burkholderia pseudomallei 576]
 gi|225928297|gb|EEH24331.1| threonine--tRNA ligase [Burkholderia pseudomallei Pakistan 9]
 gi|237505158|gb|ACQ97476.1| threonine--tRNA ligase [Burkholderia pseudomallei MSHR346]
 gi|238522290|gb|EEP85735.1| threonine--tRNA ligase [Burkholderia mallei GB8 horse 4]
 gi|242141027|gb|EES27429.1| threonine--tRNA ligase [Burkholderia pseudomallei 1106b]
 gi|243061341|gb|EES43527.1| threonine--tRNA ligase [Burkholderia mallei PRL-20]
 gi|254218102|gb|EET07486.1| threonine--tRNA ligase [Burkholderia pseudomallei 1710a]
          Length = 635

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSALIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L++IE  + ++  ++ PV  R+++R++A++   +  +G KY   +  
Sbjct: 104 YDFSYHRPFTPEDLEAIEKRMQELAKRDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPASDEIKLYSHGSFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|167836852|ref|ZP_02463735.1| threonyl-tRNA synthetase [Burkholderia thailandensis MSMB43]
          Length = 635

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSALIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L+ IE  + ++  ++ PV  R+++R++A++   +  +G KY   +  
Sbjct: 104 YDFSYHRPFTPEDLEQIEKRMQELAKRDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPVSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|269963757|ref|ZP_06178075.1| hypothetical protein VME_44590 [Vibrio harveyi 1DA3]
 gi|269831490|gb|EEZ85631.1| hypothetical protein VME_44590 [Vibrio harveyi 1DA3]
          Length = 214

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 30/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+           +  +++ FYAE+GGQ  D G   G    +Q+   +K+  G+ + + +
Sbjct: 14  ELESTVSRVDGRCIELEESIFYAESGGQESDAGTIGG----IQVIKAEKQ--GLSIVYTL 67

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                 +    +   ID+  R  L   H A  ++   ++      +++ G+ I+ D  R 
Sbjct: 68  EREPKFQAGAVVTTQIDWARRYALMKLHFAAEVILEVVTHRFPE-MNKVGAHISADKSRI 126

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D    + I    L+  +     +I  +  +++   +  +                + R  
Sbjct: 127 DFEWHESIKPLLLELQQQAQ-SVIDSHADIISDFSDTSE----------------QRRYW 169

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            VE       +   CGGTH+ +T E+  +  +   +I  G  RIE
Sbjct: 170 KVEG-----FAQVPCGGTHLKNTSEVGRIQ-LKRKNIGKGKERIE 208


>gi|167582118|ref|ZP_02374992.1| threonyl-tRNA synthetase [Burkholderia thailandensis TXDOH]
          Length = 635

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSALIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L++IE  + ++  ++ PV  R+++R++A++   +  +G KY   +  
Sbjct: 104 YDFSYHRPFTPEDLEAIEKRMQELAKRDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPASDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|83719712|ref|YP_443111.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
 gi|167620276|ref|ZP_02388907.1| threonyl-tRNA synthetase [Burkholderia thailandensis Bt4]
 gi|123767616|sp|Q2SVD8|SYT_BURTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83653537|gb|ABC37600.1| threonyl-tRNA synthetase [Burkholderia thailandensis E264]
          Length = 635

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSALIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKELHPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L++IE  + ++  ++ PV  R+++R++A++   +  +G KY   +  
Sbjct: 104 YDFSYHRPFTPEDLEAIEKRMQELAKRDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPASDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|172060451|ref|YP_001808103.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
 gi|238689138|sp|B1YP13|SYT_BURA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171992968|gb|ACB63887.1| threonyl-tRNA synthetase [Burkholderia ambifaria MC40-6]
          Length = 635

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + +L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDAALAIITDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + +I  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQEIAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQTDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|115351412|ref|YP_773251.1| threonyl-tRNA synthetase [Burkholderia ambifaria AMMD]
 gi|122323391|sp|Q0BG06|SYT_BURCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115281400|gb|ABI86917.1| Ser-tRNA(Thr) hydrolase [Burkholderia ambifaria AMMD]
          Length = 635

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + +L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSTVIDRDAALAIITDKDADGLDIIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++P T  +L+ IE  + +I  ++ PV  R+++R++A  +G    +G KY   +  
Sbjct: 104 YDFSYNRPFTPEDLEKIEKRMQEIAKKDEPVTRRVVSRDEA--AGYFRSIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + ++  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQTDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|269792214|ref|YP_003317118.1| Threonyl/alanyl tRNA synthetase SAD [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099849|gb|ACZ18836.1| Threonyl/alanyl tRNA synthetase SAD [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 392

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 142/385 (36%), Gaps = 29/385 (7%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           E + G +V++  D+ PF+   GGQ G  G  +  G+++++ D + + +G  V    +  G
Sbjct: 8   ERLKGDRVDLCLDENPFHLAGGGQPGGRGMLVSPGVQVEVQDCRVR-DGREVLTGRIIGG 66

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +    ++   +D Q R  ++  HS  H L  AL            +    +GL   +  
Sbjct: 67  DMALGETVEAQVDLQWRDWVARMHSGEHALSRALERNRPGLRVFKVNIGEREGL-ITLDF 125

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA----LLGTKYNDRVRVV 679
              +T   L   E+  N ++ ++LPV    +    A            L     + +RVV
Sbjct: 126 QGDLTWDLLWVAEEEANRVVGEDLPVTVEELTGYRAAEDPDLKANWERLQLDPPEIIRVV 185

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           S+     G +    C G HV  TG+I  + ++           +           +M   
Sbjct: 186 SL-----GGYDRVACCGVHVERTGQIGGVMVLGFKGSSP-RWEVRYTVDPVRTQLMMEWS 239

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED---LSCHK--IADV 794
             ++ ++  +     ++  RV      +   +   AK KL   + D   L   +      
Sbjct: 240 RMVRRMSREIGCPPEDI-ERVY-----WGAFEDAKAKAKLLDRLRDHLCLPFEERVRGGH 293

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISKEKKASVLIVVTEDLLDRFNAV 853
            F    +  +     + +  A++++++S    L VG+   ++    +            V
Sbjct: 294 RFHLLDLRPLGMVPAEMMNFAVRRRVESDPSSLGVGVVPAEQGLRFVACRGAGCP----V 349

Query: 854 DLARLSAKVLGGG-GGGGRPHMAQS 877
           DL+    ++   G  GGG P M   
Sbjct: 350 DLSAWLKRMRPRGLKGGGSPQMVSG 374


>gi|167562968|ref|ZP_02355884.1| threonyl-tRNA synthetase [Burkholderia oklahomensis EO147]
          Length = 635

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSALIDRDASLAIVTDKDADGLDIIRHSTAHLLAYAVKDLYPDAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L+ IE  + +++ ++ PV  R+++R++A++   +  +G KY   +  
Sbjct: 104 YDFSYHRPFTPEDLEKIEKRMQELVKKDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                ++  +++    + LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPASDEIKLYAHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|89094703|ref|ZP_01167639.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
 gi|89081049|gb|EAR60285.1| threonyl-tRNA synthetase [Oceanospirillum sp. MED92]
          Length = 639

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLMAMAVQELFPGAQVTIGPVI-EDGFYYDFAYERPFTPEDLEKIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           QNLPV   +M+R++A        +G KY   +     + ED   +S      LC G HV 
Sbjct: 130 QNLPVTRSLMSRDEATKMF--DEMGEKYKVELLQAVPDSEDLSFYSQGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG I    ++    +     R
Sbjct: 188 STGHIKAFKLMK---VAGAYWR 206


>gi|237798458|ref|ZP_04586919.1| synthetase, putative [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021309|gb|EGI01366.1| synthetase, putative [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 264

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 78/218 (35%), Gaps = 43/218 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--------------KAEGIFVHHA 558
           +  D+T  Y E GGQ  D G        ++    +K              K  GI +H  
Sbjct: 39  IEVDRTVAYPEGGGQEADFGTIELRSGLVRFIGAKKLYGTPIRLEGFKGGKLGGIILHMV 98

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCIT 613
             +   L       M+  + ID   R +L+++H+A+H L+ A  ++         G  I 
Sbjct: 99  HPDDLHLLDKINEGMTAHVKIDILRRARLTLSHTASHFLYAAAVSLRKELKQWTLGCHIK 158

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKY 672
            D  RFD    KP +  E+  IE   N++I +N  +    +   EDA            Y
Sbjct: 159 EDSARFDFLVEKPFSIEEVSEIERRANELIVRNKIIENYAVQGLEDARMW--------VY 210

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
                                CGGTH+ S   I  L +
Sbjct: 211 QGIEI---------------PCGGTHLDSPQAIGHLSV 233


>gi|186476316|ref|YP_001857786.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
 gi|238691316|sp|B2JJJ7|SYT_BURP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|184192775|gb|ACC70740.1| threonyl-tRNA synthetase [Burkholderia phymatum STM815]
          Length = 635

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G      +    ++  +++L +  D        I HS  HLL +A+  +        G 
Sbjct: 37  GGKIDGELVDTSALIDHDVALAIVTDKDADGLDIIRHSTAHLLAYAVKDLFPEAQVTIGP 96

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            I  +G  +D ++S+P T  +L+ IE  + ++  ++ PV  R+++R++A     +  +G 
Sbjct: 97  VID-NGFYYDFSYSRPFTPEDLEKIEKRMQELAKKDEPVSRRVVSRDEAADYFKS--IGE 153

Query: 671 KYNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           KY   +       +D  ++S    + LC G HV STG++ +  ++    +     R
Sbjct: 154 KYKAEIIESIPASDDIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|320169206|gb|EFW46105.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 277

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 88/239 (36%), Gaps = 29/239 (12%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI---RLQITDVQ--KKAEGIFVHHAIVERGIL-- 565
           +V D+T  + + GGQ  D G    D     R  + DV+  K A  +  H+       L  
Sbjct: 37  LVLDETIMHPQGGGQPSDVGFIQWDAQPERRFTVVDVRADKGAAAVVHHYGSFGSQDLDD 96

Query: 566 ------RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                      + + +D   RR  +  HSA HLL  A+  +  + +  +     PDG   
Sbjct: 97  AALATASAGAPVTIHVDESKRRLHARLHSAGHLLDSAVRNLGHTGLVPSKGYHFPDGPNV 156

Query: 620 DV--THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-------AALLGT 670
           +      + +      ++   +  +IA    V  + +        G+       +A+   
Sbjct: 157 EYLGELEQTVRDGLPAALNIELQRLIATGGDVQVKYVPTSTLEGGGSGHSLAAPSAVPAQ 216

Query: 671 KYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           + ++ +R  S +       GGV     CGGTHV S G++  + +        G  ++  
Sbjct: 217 ETSEPLRYDSPDAVRMVNIGGVE--CPCGGTHVKSIGDLQNVKVTKVKR-AKGTLKVYY 272


>gi|167570156|ref|ZP_02363030.1| threonyl-tRNA synthetase [Burkholderia oklahomensis C6786]
          Length = 635

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           + SL +  D        I HS  HLL +A+  +        G  I  +G  +D ++ +P 
Sbjct: 54  DASLAIVTDKDADGLDIIRHSTAHLLAYAVKDLYPDAQVTIGPVID-NGFYYDFSYHRPF 112

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  +L+ IE  + +++ ++ PV  R+++R++A++   +  +G KY   +       ++  
Sbjct: 113 TPEDLEKIEKRMQELVKKDEPVTRRVVSRDEAVSYFRS--IGEKYKAEIIESIPASDEIK 170

Query: 688 VHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +++    + LC G HV STG++ +  ++    +     R
Sbjct: 171 LYAHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|294643224|ref|ZP_06721050.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CC 2a]
 gi|294806650|ref|ZP_06765484.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292641347|gb|EFF59539.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides ovatus SD CC 2a]
 gi|294446186|gb|EFG14819.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 141

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+A HLL+  +    G   S+N + I     + D   S   T+ +++SIE+ VN+ I+Q
Sbjct: 1   MHTAEHLLNATMVKTFGCPRSRN-AHIERKKSKCDYILSSCPTAEQIQSIEETVNEAISQ 59

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           NLPV    M  E A      + L    +  +R+V +     G + +  C G HVS+T E+
Sbjct: 60  NLPVTIEYMTHEQAKDIVDLSKLPADASPTLRIVRI-----GDYDACACIGLHVSNTSEM 114

Query: 706 MLLYIVS 712
               I+S
Sbjct: 115 GTFKIIS 121


>gi|301310673|ref|ZP_07216612.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 20_3]
 gi|300832247|gb|EFK62878.1| alanyl-tRNA synthetase family protein [Bacteroides sp. 20_3]
          Length = 153

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  +
Sbjct: 1   MKQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E A      + L    +D +R+V +     G 
Sbjct: 60  AEVMAEVEKKINEVIDRHLPVTIEFMPKEKAGGIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + +  C G+HV++T EI    +++      G  R+   
Sbjct: 115 YDACACIGSHVANTSEIGHFKLLNYD-YADGRLRLRFK 151


>gi|219118712|ref|XP_002180123.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408380|gb|EEC48314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 277

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 23/228 (10%)

Query: 513 VVFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAE-GIFVHHAIVE-RGILRTE 568
           +  D+T  +A+ GGQ  D G       G+ + ++ V    E G+  H   +  +   R  
Sbjct: 52  ICLDRTVMHAQGGGQPTDVGRLEITATGVSVDVSKVLIDRETGVATHFGTLSGKTPPRVG 111

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI- 627
            ++ + ++   RR LS  H+A H++  A++   G  +    +    DG   +   S PI 
Sbjct: 112 DAVTVKLNVSQRRILSECHTAGHVVDSAMAR-CGKLMEPTKAYHFLDGPYVEYKGSVPIE 170

Query: 628 -TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA-------LLGTKYNDRVRVV 679
              + L+ +++    ++ +       I+++E+A              L   K   ++RVV
Sbjct: 171 ERDSVLQELQEAFCQLVDEGFDTKIDILSKEEADELCNRQAQNFDVNLFADKRTQQIRVV 230

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEI--MLLYIVSESSIRAGIRRIEA 725
           +V            CGGTHV ST E+      I    S + G+ R++ 
Sbjct: 231 TVAGFP------CPCGGTHVRSTTELKQGRWGITGLKS-KKGVVRVKY 271


>gi|91776355|ref|YP_546111.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
 gi|123254150|sp|Q1GZR7|SYT_METFK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91710342|gb|ABE50270.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylobacillus
           flagellatus KT]
          Length = 635

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 10/176 (5%)

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G     A+    ++  +  L +  D        I HS  HLL  A+  +        G 
Sbjct: 37  GGKVNGKAVDTSYLITDDADLSIITDRDAEGLAIIRHSTAHLLAQAVKQLFPDAQVTIGP 96

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            I  +G  +D ++ +P T  +L+ IE  + ++  +++P+V  +M R++A+A   +  +G 
Sbjct: 97  VI-ENGFYYDFSYKRPFTPEDLQKIEARMQELAKRDIPIVRTVMERDEAVAYFQS--IGE 153

Query: 671 KYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +Y   +       ++  +++      LC GTHV STG++    ++    +     R
Sbjct: 154 QYKAEIIGSIPADQEISLYTQDDFTDLCRGTHVPSTGKLKAFKLMK---VAGAYWR 206


>gi|262164694|ref|ZP_06032432.1| alanyl-tRNA synthetase domain protein [Vibrio mimicus VM223]
 gi|262027074|gb|EEY45741.1| alanyl-tRNA synthetase domain protein [Vibrio mimicus VM223]
          Length = 243

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 10/219 (4%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
                 V V  D + FY + GGQ  D G    +GI  ++   +   EGI          +
Sbjct: 23  VEMDDTVAVYCDSSIFYPQGGGQPCDLGSLEINGIAYRVHHTETTEEGIAHVLESHPSLL 82

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +   M  +  ID + R   + +H+A HL+ H +   + +++S       P     ++  S
Sbjct: 83  ICNGMPCIQRIDMKRRLINAKSHTAGHLISHIIEE-MDNNLSPAKGHHYPGDSYIELIES 141

Query: 625 KPITSAELKSIEDNVNDII---AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           +     +  S+E  +N+ I       P   + +  + A       LL        ++  +
Sbjct: 142 ERTN--DNFSVE-LINEQINLLVNRAPRAIQSIELDLAEVQSLRPLLCKFIPQSTQIRMI 198

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             +     +   CGGTHV ST E+  L +      +  I
Sbjct: 199 AIDG---FTPVPCGGTHVVSTTELNGLQVTRIKRKKDRI 234


>gi|237747667|ref|ZP_04578147.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
 gi|229379029|gb|EEO29120.1| threonyl-tRNA synthetase [Oxalobacter formigenes OXCC13]
          Length = 635

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 10/175 (5%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +    ++  ++ L +  D        + HS  HLL +A+  +        G  
Sbjct: 38  GKVNGKLVDTSYMIDNDVELSIVTDRDPEGVDILRHSTAHLLAYAVKQLFPDAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D ++ +P T  +L++IE  + ++  +N  V  +++ R++A+A   +  +G  
Sbjct: 98  ID-NGFYYDFSYKRPFTPEDLQAIEKKMTELARKNEEVTRKVLPRDEAVAYFKS--IGED 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           Y   +     + ED  +++S     LC G HV + G++ +  ++    +     R
Sbjct: 155 YKAEIIESIPQNEDVSLYTSGGFTDLCRGPHVPANGKLKVFKLM---RLAGAYWR 206


>gi|206900126|ref|YP_002250745.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
 gi|206739229|gb|ACI18287.1| threonyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12]
          Length = 638

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 12/197 (6%)

Query: 527 QLGDTGCAIGDGIRLQITDVQ---KKAEGIFVHHAIVERGILRTEMSLVLTIDYQ-NRRQ 582
           Q  D      +G  L++   +   KK  G  ++  + +  +   + S V  +D++    +
Sbjct: 6   QYKDKIW-EKEGNLLEVVKEEGLEKKVFGAKINGVLSDLNVFPQDGSFVELLDWESEDGR 64

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H++ H+L HA+  +        G  I  DG  +D   S+P +  +L+ IE  + +I
Sbjct: 65  SIYRHTSAHILAHAVKELFPEVKLGIGPAI-EDGFYYDFYRSEPFSQEDLEKIEAKMREI 123

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I Q+LP+    + RE+A        +   +   +     E E    +       LC G H
Sbjct: 124 IKQDLPIERIEVTREEAERI--LKEMKEDFKLELLEEIPEGERISFYRQGNFIDLCRGPH 181

Query: 699 VSSTGEIMLLYIVSESS 715
           + STG +    ++S S 
Sbjct: 182 LPSTGWVKSFKLLSVSG 198


>gi|148653933|ref|YP_001281026.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
 gi|172048584|sp|A5WHD5|SYT_PSYWF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148573017|gb|ABQ95076.1| threonyl-tRNA synthetase [Psychrobacter sp. PRwf-1]
          Length = 644

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 22/223 (9%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  + S+ +           I HS  HLL HA+  +  +     G  I  DG  
Sbjct: 45  VDASDPITQDASVEIVTAKDKDGVDIIRHSTAHLLGHAVKQLYPNVKMVIGPVI-EDGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++I QN  V+ ++  RE+AI        G  Y  ++  
Sbjct: 104 YDIFSEKPFTPEDMAAIEKRMAELIKQNYDVIKKMTPREEAIKIFEER--GEDYKLKLIA 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E ++ G++       +C G HV +T  + +  ++  S                A   
Sbjct: 162 DMPEEKELGLYHHQEYVDMCRGPHVPNTRFLKVFKLMKMSG---------------AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
              ++E+L+ +       + ++   ++ I E  ++      K 
Sbjct: 207 GDAKNEQLQRIYGTAWADKKDLQAYIQRIEEAEKRDHRKIGKA 249


>gi|238027731|ref|YP_002911962.1| threonyl-tRNA synthetase [Burkholderia glumae BGR1]
 gi|237876925|gb|ACR29258.1| Threonyl-tRNA synthetase [Burkholderia glumae BGR1]
          Length = 635

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 18/220 (8%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HSA HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSALIDHDASLAIVTDKDADGLDIIRHSAAHLLAYAVKDLYPEAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++S+P T  +L  IE  + ++  ++ PV  R+++R +A+       +G KY   +  
Sbjct: 104 YDFSYSRPFTPEDLAKIEKRMQELAKKDEPVSRRVVSRAEAVDYF--RGIGEKYKAEIIE 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                ++  ++S    + LC G HV STG++ +  ++    +     R ++   Q  R +
Sbjct: 162 SIPSSDEIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWRGDSKNEQLQRIY 218

Query: 735 L------MGQDEKLKSLASFLKVSQGNVVGRVE--EIWEE 766
                    QD  L  L    K     +  +++   + EE
Sbjct: 219 GTAWTRKEDQDAYLHMLEEAEKRDHRKLAKQLDLFHMQEE 258


>gi|292493207|ref|YP_003528646.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
 gi|291581802|gb|ADE16259.1| threonyl-tRNA synthetase [Nitrosococcus halophilus Nc4]
          Length = 644

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 77/199 (38%), Gaps = 13/199 (6%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y E    + D    IG G+       +    G    H +     L+ +  L +       
Sbjct: 13  YFEHSVTVYDVAADIGSGLA------KAALAGKIDGHLVDTSYPLKEDTELTVITGRDPE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I HS  HLL  A+  +        G  I  DG  +D  + K  +  +L++IE  + 
Sbjct: 67  GLEIIRHSCAHLLAQAVKALYPEAQVTIGPVI-EDGFYYDFAYPKGFSPEDLEAIEAKMQ 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           +++ Q++ V   + +RE+AI+      +G +Y   +     + E+  ++       LC G
Sbjct: 126 ELVEQDISVHREVKSREEAISLF--RQMGEEYKAEIIASIPQGEEISLYRQGDFVDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV ST  +    +   S 
Sbjct: 184 PHVPSTSRLKAFKLTKVSG 202


>gi|218886217|ref|YP_002435538.1| threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757171|gb|ACL08070.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 148

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 7/142 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+L+  +    G     + + + P   + D      +  AE ++IE  VN +++
Sbjct: 8   RMHTAEHVLNGVMVARHGCGRCFS-AHVNPKKSKCDYHFDHQLDDAEARAIEAEVNRVLS 66

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            NLPV+   M+R +A +      L     D +R+V V     G   +  C GTHV++T E
Sbjct: 67  GNLPVIAVDMDRAEAASRFDLGRLPDDAGDTLRIVRV-----GDFDACPCSGTHVANTAE 121

Query: 705 IMLLYIVSESSIRAGIRRIEAI 726
           +    I+S      G+ R+   
Sbjct: 122 VGTFRIISHD-FENGVLRVRFK 142


>gi|256839616|ref|ZP_05545125.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|256738546|gb|EEU51871.1| alanyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 153

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 74/158 (46%), Gaps = 7/158 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   ++  +
Sbjct: 1   MKQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYLLAEEPS 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  +N++I ++LPV    M +E A      + L    +D +R+V +     G 
Sbjct: 60  AEAMAEVEKKINEVIDRHLPVTIEFMPKEKAGGIVDLSKLPDDASDTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           + +  C G+HV++T EI    +++      G  R+   
Sbjct: 115 YDACACIGSHVANTSEIGHFKLLNYD-YADGRLRLRFK 151


>gi|217967413|ref|YP_002352919.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336512|gb|ACK42305.1| threonyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 638

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 12/197 (6%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIF---VHHAIVERGILRTEMSLVLTIDYQNRR-Q 582
           Q  D      +G  L++   +     +F   ++    +  +   + SLV  +D++N   +
Sbjct: 6   QYKDKVW-EKEGNLLEVIKKEGLEGRVFGAKINGVFSDLNVYPPDGSLVELLDWENEEGR 64

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H++ H+L HA+  +        G  I  DG  +D    +P +  +L+ IE+ + +I
Sbjct: 65  NIYRHTSAHILAHAVKELFPEVKLGIGPAI-EDGFYYDFYRKEPFSQEDLEKIENKMKEI 123

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I +NLP+    + RE+AI       L   +   +     E E    +       LC G H
Sbjct: 124 INRNLPIERIEVTREEAIKI--LRDLKEDFKLELLEEIPEGEKISFYKQGSFMDLCRGPH 181

Query: 699 VSSTGEIMLLYIVSESS 715
           + ST  +    ++S S 
Sbjct: 182 LPSTSWVKAFKLLSVSG 198


>gi|259483106|tpe|CBF78206.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_8G07110) [Aspergillus nidulans FGSC A4]
          Length = 283

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 89/272 (32%), Gaps = 31/272 (11%)

Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521
            L  +       +V   K   +L +    + + I       +E  +     V   QT FY
Sbjct: 24  YLDDATLCTTSTQVTSSKSFANLNDEEKRLARNISSGA---DEDRTEDIFAVTTQQTVFY 80

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            + GGQ  DTG            D +    G F    ++++        + L ID   R 
Sbjct: 81  PQGGGQPSDTGIIAIS------FDGKILHFGRFAKVPLIKQPYFTAHQPVTLHIDAAKRN 134

Query: 582 QLSINHSATHLLHHALS----------TILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
             S  H+A H+L  A+            +  +H  +         L       KP+  A+
Sbjct: 135 YHSRLHTAGHVLGLAMRLLSTTLGERKKVKANHFPREACLEFEGLLY---NEHKPLIQAK 191

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  I D        ++ +        +        + G +     RV   E    G   +
Sbjct: 192 VDEITDMD-----LDVRISWWSEEEVERRRDELDMVEGREVGGMGRVRVAEI---GDLDA 243

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             CGGTHV ST     + I   S  + GI R+
Sbjct: 244 NPCGGTHVVSTKRTGRIVIRKISR-QKGISRV 274


>gi|83748297|ref|ZP_00945322.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
 gi|83725029|gb|EAP72182.1| Threonyl-tRNA synthetase [Ralstonia solanacearum UW551]
          Length = 635

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     + E S+ L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GHLVDTSFKIEQSVDLAIVTDKDADGLDVIRHSTAHLLAYAVKELHPDAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +L +IE  + ++  ++  V   + +R +A+       +G KY   
Sbjct: 101 GFYYDFAYKRPFTPEDLVAIEKKMAELAKKDEKVTREVWSRNEAVKLFEG--MGEKYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 159 IIASIPEDQEIGLYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|163855649|ref|YP_001629947.1| alanyl-tRNA synthetase domain-containing protein [Bordetella petrii
           DSM 12804]
 gi|163259377|emb|CAP41677.1| alanyl-tRNA synthetase domain protein [Bordetella petrii]
          Length = 210

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 36/210 (17%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           E+  SG    V  + TPF+ + GGQ  D G        +++  V + + G  +H+    R
Sbjct: 22  EQLASGGYG-VRLNATPFHPQGGGQPADVGWI----GNVEVFQV-EASNGEILHYI---R 72

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             +   ++    +D + R++ S  HSA HL+ HAL  +    V    +   P   R    
Sbjct: 73  QAVALGVT-TAKVDAERRQRHSRLHSAGHLIGHALEPLAWRPV---KAHHWPGESRVVFK 128

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
                   ++ +++   +D+IA NLP    +                    D  +   V 
Sbjct: 129 PDDGAQVVDVAAVQSRCDDLIASNLPCRALV--------------------DENQFRQVR 168

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           +     +    CGGTHV +T ++  L I+S
Sbjct: 169 FGHLSPY---ACGGTHVGATADLSGLQILS 195


>gi|207742945|ref|YP_002259337.1| threonyl-trna synthetase protein [Ralstonia solanacearum IPO1609]
 gi|206594340|emb|CAQ61267.1| probable threonyl-trna synthetase protein [Ralstonia solanacearum
           IPO1609]
          Length = 379

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     + E S+ L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GHLVDTSFKIEQSVDLAIVTDKDADGLDVIRHSTAHLLAYAVKELHPDAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +L +IE  + ++  ++  V   + +R +A+       +G KY   
Sbjct: 101 GFYYDFAYKRPFTPEDLVAIEKKMAELAKKDEKVTREVWSRNEAVKLFEG--MGEKYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 159 IIASIPEDQEIGLYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|189465580|ref|ZP_03014365.1| hypothetical protein BACINT_01938 [Bacteroides intestinalis DSM
           17393]
 gi|189437854|gb|EDV06839.1| hypothetical protein BACINT_01938 [Bacteroides intestinalis DSM
           17393]
          Length = 157

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S + + I     + D +     T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTCEHIVNRTMMNLFGCGRSVS-AHIERKKSKLDYSLETAPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++K +E+ VND+IAQ L V T  + +E+A        L    ++ VR+V V     G 
Sbjct: 60  EEDVKRLEEAVNDVIAQGLDVTTEFITQEEAQGRFDLKRLPEDASETVRIVKV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS 712
           +   LC GTHV +T EI +  ++S
Sbjct: 115 YDECLCLGTHVKNTSEIGIFKVIS 138


>gi|124267077|ref|YP_001021081.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
 gi|166225459|sp|A2SH07|SYT_METPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124259852|gb|ABM94846.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Methylibium
           petroleiphilum PM1]
          Length = 635

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 11/180 (6%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTI-DYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           K A G  V   +V+ G      + +  + D        I HS  HLL +A+  +      
Sbjct: 33  KAALGGRVDGKLVDTGHRIEGDARLAIVTDKDADGLDLIRHSTAHLLAYAVKELFPEAQV 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D ++ +P T  +L +IE  + ++  ++  V  R++ R++A+A   + 
Sbjct: 93  TIGPVI-ENGFYYDFSYKRPFTPEDLAAIEAKMTELAKKDEKVERRVLPRDEAVAYFKS- 150

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            +G  Y   +       +D  ++       LC G HV STG++    ++    +     R
Sbjct: 151 -IGEDYKAEIIAGIPAGQDVSLYREGRFEDLCRGPHVPSTGKLRHFKLMK---VAGAYWR 206


>gi|114319929|ref|YP_741612.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312208|sp|Q0AAL5|SYT_ALHEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114226323|gb|ABI56122.1| Ser-tRNA(Thr) hydrolase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 641

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQ--LSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     R +  + L I           I HS  HL+  A+  +        G  I  +
Sbjct: 42  GRLVDLSHRIDDDVQLEIVTDRDPDGVDMIRHSTAHLMAQAVKELFPEAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +LK+IE  + ++  Q+  V   + +R++AI        G +Y   
Sbjct: 101 GFYYDFAYKRPFTEDDLKAIEKKMEELARQDFEVHREVWDRDEAIRFFLEQ--GEQYKAE 158

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     E+E   V+       LC G HV +TG++    +     +     R
Sbjct: 159 IIEDLPEHETISVYKQGDFLDLCRGPHVPNTGKLKAFKL---QKVAGAYWR 206


>gi|66047550|ref|YP_237391.1| synthetase, putative [Pseudomonas syringae pv. syringae B728a]
 gi|63258257|gb|AAY39353.1| synthetase, putative [Pseudomonas syringae pv. syringae B728a]
 gi|330969480|gb|EGH69546.1| synthetase, putative [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 263

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 44/231 (19%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--------------KAEGIFVHHA 558
           +  D T  Y E GGQ  D G        ++   V+K              K  G+ +H  
Sbjct: 37  IELDCTVAYPEGGGQEADFGTIELPIGTVRFVWVKKLYGTPIHLEGFKGGKLGGVILHMI 96

Query: 559 IVERGIL----RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCIT 613
             E   L       M+ ++ ID   R +LS++HSA+H L+ A +++         G  I 
Sbjct: 97  HPEDLHLLDSISEGMAALIRIDILRRERLSLSHSASHFLYAAATSLSEELKQWTIGCHIK 156

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKY 672
            +  RFD    +  +S ++  IE   N++IA +  + +  + + EDA             
Sbjct: 157 ENSARFDFLVEESFSSDDISEIERLANELIAHDDVIKSYTVFDVEDA------------- 203

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               R+ S +  +        CGGTH+ +   I  L  V    +  G  R+
Sbjct: 204 ----RMWSYQGIEI------PCGGTHLVNPSAIGRLN-VRRKRLGKGKERL 243


>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074079|gb|ADJ63478.1| threonyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  +  L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSYLIDKDAELSIITDKDADGLEVIRHSTAHLLAYAVKELFPEAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L++IE  + ++  ++ PV  +++ R++A+A   +  +G  Y   +  
Sbjct: 104 YDFSYKRPFTPEDLQAIEKKMAELAKKDEPVTRKVLPRDEAVAYFKS--IGEDYKAEIIA 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              + ED  +++      LC G HV STG++ +  ++  + 
Sbjct: 162 SIPQNEDVSLYTEGSFTDLCRGPHVPSTGKLKVFKLMKLAG 202


>gi|152980466|ref|YP_001353177.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
 gi|166223349|sp|A6SY30|SYT_JANMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151280543|gb|ABR88953.1| threonyl-tRNA synthetase [Janthinobacterium sp. Marseille]
          Length = 635

 Score = 92.1 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 19/206 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +    ++  +  L +  D        I HS  HLL +A+  +        G  
Sbjct: 38  GKVNGDVVDTSYLIEKDSDLAIITDKDAEGIDVIRHSTAHLLAYAVKELFPDAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D ++ +P T  +L +IE  + ++  ++ PV  ++M R++A+A   +  +G  
Sbjct: 98  ID-NGFYYDFSYKRPFTPEDLVAIEKKMTELAKKDEPVTRKVMPRDEAVAYFKS--IGEA 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSES-------SIRAGI 720
           Y   +       ++  +++      LC G HV STG++ +  ++  +       S    +
Sbjct: 155 YKAEIIESIPADQEVSLYTEGKFTDLCRGPHVPSTGKLKVFKLMKLAGAYWRGDSKNEML 214

Query: 721 RRIEAIT-----GQRARSHLMGQDEK 741
           +RI          Q A  H++ + EK
Sbjct: 215 QRIYGTAWAKKEEQEAYLHMLEEAEK 240


>gi|312795972|ref|YP_004028894.1| Threonyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454]
 gi|312167747|emb|CBW74750.1| Threonyl-tRNA synthetase (EC 6.1.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 643

 Score = 92.1 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 77/169 (45%), Gaps = 7/169 (4%)

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G      +    +++ + ++ +  D        I HS  HLL +A+  +        G 
Sbjct: 45  GGKIDGELVDTSAVIQRDANVSIVTDKDPEGLEIIRHSTAHLLAYAVKELFPQAQVTIGP 104

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            +  +G  +D  + +  T  +L+SIE  ++++  ++ PV  R+++R++A+       +G 
Sbjct: 105 VVD-NGFYYDFAYHRAFTPEDLQSIEQRMHELAKKDEPVSRRVVSRDEAVDYF--KRIGE 161

Query: 671 KYNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESS 715
           +Y   +     + E   ++S    + LC G HV STG++ +  ++  + 
Sbjct: 162 RYKAEIIESIPQGEQIKLYSHGGFTDLCRGPHVPSTGKLKVFKLMKLAG 210


>gi|237745470|ref|ZP_04575950.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
 gi|229376821|gb|EEO26912.1| threonyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]
          Length = 650

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 10/175 (5%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +    ++  ++ L +  D        + HS  HLL +A+  +        G  
Sbjct: 53  GKVDDRLVDTSYLIDHDVDLSIVTDRDVEGVDILRHSTAHLLAYAVKQLFPEAQVTIGPV 112

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D ++ +P T  +L++IE  + ++  +N  V  +++ R++A+A   +  +G  
Sbjct: 113 I-ENGFYYDFSYKRPFTPEDLQAIEKKMTELARKNETVTRKVLPRDEAVAYFKS--IGED 169

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           Y   +     + ED  +++S     LC G HV + G++ +  ++    +     R
Sbjct: 170 YKAEIIESIPQNEDVSLYTSGGFTDLCRGPHVPANGKLKVFKLM---RVAGAYWR 221


>gi|17546296|ref|NP_519698.1| threonyl-tRNA synthetase [Ralstonia solanacearum GMI1000]
 gi|22654118|sp|Q8XZ29|SYT_RALSO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17428593|emb|CAD15279.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 635

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     R E ++ L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GQLVDTSFRIEQNVDLAIVTDKDTDGLDVIRHSTAHLLAYAVKELYPEAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +L +IE  + ++  ++  V   + +R+DA+       +G KY   
Sbjct: 101 GFYYDFAYKRPFTPEDLVAIEKRMAELAKKDEKVTREVWSRDDAVKLFEG--MGEKYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 159 IIASIPEDQEIGLYREGNFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|152002523|dbj|BAF73547.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W]
          Length = 85

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61
               IR  +L+FF    H +  SSSLIP N+  L++ N+G+ P K  F G +KP ++ +
Sbjct: 1  MTSFEIRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRI 60

Query: 62 TTVQKCV 68
          T VQKC+
Sbjct: 61 TNVQKCI 67


>gi|149374489|ref|ZP_01892263.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
 gi|149361192|gb|EDM49642.1| threonyl-tRNA synthetase [Marinobacter algicola DG893]
          Length = 641

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQ--LSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +       E    L I  +        I HS  HLL  A+  +  S     G  +  +
Sbjct: 42  GKLVDTSFPIEEDAELAIVTERDEDGVDIIRHSTAHLLAMAVKELFPSAQVTIGPVVD-N 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D    +P T+ +L  IE  + ++  Q++PV   +M+R++A+       +G +Y  R
Sbjct: 101 GFYYDFKFDRPFTNEDLSRIEKRMEELAKQDIPVSRSVMSRDEAVRLF--DEMGEEYKVR 158

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +       ED   +       LC G HV +TG++    +     +     R
Sbjct: 159 IIEDIPGEEDLSFYRQGDFIDLCRGPHVPNTGKLKAFKLTK---VAGAYWR 206


>gi|53805116|ref|YP_113204.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
 gi|73919805|sp|Q60AZ3|SYT_METCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53758877|gb|AAU93168.1| threonyl-tRNA synthetase [Methylococcus capsulatus str. Bath]
          Length = 638

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 22/217 (10%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +  +  + L           I HS  HLL  A+  +        G  I  DG  +D ++ 
Sbjct: 51  IEADAEVALVTARDADGVEVIRHSTAHLLAQAVKALYPKAQVTIGPVIQ-DGFYYDFSYE 109

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +P T  +L++IE  ++++ AQ LPV  R M RE+AIA   +  LG  Y   +       E
Sbjct: 110 RPFTPEDLEAIEAKMHELAAQALPVERRTMPREEAIAYFRS--LGEAYKAEIIEAIPRGE 167

Query: 685 DGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
              ++S      LC G HV  TG +    ++    I     R               ++E
Sbjct: 168 VISLYSQGDFTDLCRGPHVPDTGRLNAFKLMK---IAGAYWR------------GDSRNE 212

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            L+ +       + ++   ++ + E  R+      K 
Sbjct: 213 MLQRIYGTAWGDRKDLAAYLQRLEEAERRDHRKLGKA 249


>gi|171463692|ref|YP_001797805.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238689063|sp|B1XV14|SYT_POLNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171193230|gb|ACB44191.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 640

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 27/236 (11%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI-DYQNRR 581
           EA  ++ D   +IG G+        K A G  V   +V+   +  + S +  I D     
Sbjct: 15  EAPVRVADVAQSIGSGL-------AKAALGGIVDGKMVDTSFVIDKDSQLAIITDKSPEA 67

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
              + HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L ++E  + +
Sbjct: 68  LEIVRHSTAHLLAYAVKELFPEAQVTIGPVI-ENGFYYDFSYHRPFTPDDLVALEKKMTE 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           +  ++ PV   +M R++A+        G  Y   +     + ED  +++      LC G 
Sbjct: 127 LAKRDEPVTRTVMPRDEAVEFFKKQ--GENYKAELIASIPQGEDVSLYAEGKFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT-----GQRARSHLMGQDEK 741
           HV STG++ +  ++  +       S    ++RI   T      Q A  H++ + EK
Sbjct: 185 HVPSTGKLKVFKLMKLAGAYWRGDSKNEMLQRIYGTTWLRKEDQDAYLHMLEESEK 240


>gi|254468875|ref|ZP_05082281.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
 gi|207087685|gb|EDZ64968.1| threonyl-tRNA synthetase [beta proteobacterium KB13]
          Length = 652

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 23/228 (10%)

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCI 612
            V   +V+     T  + V  +  +N   L I  HS  HLL +A+  +        G  I
Sbjct: 56  HVDGKLVDLTHEITSDAAVSIVTAKNDEGLDIIRHSTAHLLAYAVKELFPEAQVTIGPTI 115

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             DG  +D ++ +  T  +L +IE  + +++ ++  V   +M R+DA+        G KY
Sbjct: 116 D-DGFYYDFSYHRAFTPEDLSAIEKKMAELVKEDHAVTREVMKRDDAVKFFLDQ--GEKY 172

Query: 673 NDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
              +     + E+  V+     S LC G HV STG++ +  ++    +     R      
Sbjct: 173 KAEIIGSIPQDEEVTVYHEGKFSDLCRGPHVPSTGKLKVFKLMK---VAGAYWR------ 223

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
                     +E L+ +      ++ ++   +  + E  ++      K
Sbjct: 224 ------GDSNNEMLQRIYGTAWATKDDLKDYLHRLEEAEKRDHRKLGK 265


>gi|302883070|ref|XP_003040439.1| hypothetical protein NECHADRAFT_52748 [Nectria haematococca mpVI
           77-13-4]
 gi|256721319|gb|EEU34726.1| hypothetical protein NECHADRAFT_52748 [Nectria haematococca mpVI
           77-13-4]
          Length = 270

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 83/236 (35%), Gaps = 19/236 (8%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAE 551
           + Q  + + +  +     V+ +QT F+ + GGQ  D G     G          +     
Sbjct: 33  LEQDNQDLFKQGTEHDYAVITEQTIFHPQGGGQPSDVGKMTDQGGVCFTAAAARMDATGN 92

Query: 552 GIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV---S 606
           G  +H                +   ID + R   S  H+A H+L  A++ +L   +    
Sbjct: 93  GQVLHFGRFNSPGDTFSQGHDVDQEIDLELRLLYSRYHTAGHVLGSAVNHLLKDKIEDFD 152

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
           +  +   PD    +          +  +I+  V++ IA  +PV     + +D   +G   
Sbjct: 153 ELKASHFPDSASCEFQGLIEGKWKD--AIQQKVDEFIAAKMPVEIHWWDEQDFRDNGLER 210

Query: 667 LLGT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           L          ++ RVV +   +        CGGTHV +T       +   S  + 
Sbjct: 211 LTPDASFVAPGEKFRVVKIVGAE-----VYPCGGTHVDTTDLCGETKVKKISRSKG 261


>gi|253996955|ref|YP_003049019.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
 gi|253983634|gb|ACT48492.1| threonyl-tRNA synthetase [Methylotenera mobilis JLW8]
          Length = 635

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 83/206 (40%), Gaps = 11/206 (5%)

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            +   +  D    + +  + +     +    G      +    ++  +  L +  D    
Sbjct: 7   PDGSQRSFDLPVTVAEVAMNIGAGLAKAALAGKVNDKLVDTSYLIEVDSDLAIITDKNPE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I HSA HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + 
Sbjct: 67  GLDVIRHSAAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLIAIEKKMA 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++ PV  +++ R +A+A   +  +G +Y   +       +D  +++      LC G
Sbjct: 126 ELAKKDEPVTRKVLPRAEAVAYFKS--IGEQYKAEIIESIPSDDDVSLYTEGNFTDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV STG+I    ++    +     R
Sbjct: 184 PHVPSTGKIKSFKLMK---LAGAYWR 206


>gi|289208097|ref|YP_003460163.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
 gi|288943728|gb|ADC71427.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. K90mix]
          Length = 638

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 94/258 (36%), Gaps = 31/258 (12%)

Query: 541 LQITDVQKKAE---------GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
           + + DV K            G      +  R  +  +  L +  D        I HS  H
Sbjct: 18  VTVLDVAKDIGPGLAKATLAGKVNGQLVDARHEIDADAELAIVTDRDPEGVEIIRHSTAH 77

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           L+  A+  +        G  I  +G  +D  + +  T  +L+ IE  + ++  Q+LPV  
Sbjct: 78  LMAQAVKQLFPEAQVTIGPTI-ENGFYYDFAYDRGFTPEDLEKIEKRMKELAKQDLPVER 136

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIML 707
            +M+R++A+       +G +Y   +     + E+  ++       LC G H+ STG++  
Sbjct: 137 SLMDRDEAVKYF--RDMGEEYKAEIIASIPQGENISLYKQGDFVDLCRGPHIPSTGKLKA 194

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
             +     +     R                +E L+ +      ++  +   +E + E  
Sbjct: 195 FKLTK---VAGAYWR------------GDSDNEMLQRIYGTAWANKDQLKEYLERLKEAE 239

Query: 768 RKLQLIHAKRKLQLNVED 785
           R+      +     +++D
Sbjct: 240 RRDHRKIGQELDLFSIQD 257


>gi|330820381|ref|YP_004349243.1| metal-dependent hydrolase [Burkholderia gladioli BSR3]
 gi|327372376|gb|AEA63731.1| metal-dependent hydrolase [Burkholderia gladioli BSR3]
          Length = 223

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 32/222 (14%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           AV GQ+V V   +T F+A +GGQ  D G   G      +    K  EG+ + + +     
Sbjct: 22  AVDGQRVHV--RETIFFASSGGQESDAGTLGG----YPVLHADK--EGLDLVYTLPPDHQ 73

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           LR    + + ID   R  L  +H A  ++   +       + + G+ I  D  R D    
Sbjct: 74  LRAGDGVAIWIDGARRLGLMRHHFAAEMILQLVYRARPG-IERIGAHIAADKARIDFASD 132

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
             ++   L  +E     ++A+ LP+ T   + +                   R   VE  
Sbjct: 133 TSLSPL-LPELEREAASLVARALPIHTAFSDIDA----------------ERRYWQVEG- 174

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                +S  CGGTH  +T E+  L  +   +   G   IE +
Sbjct: 175 ----FASMPCGGTHPRTTAEVGALT-LKRRNTGKGKECIEIV 211


>gi|187924732|ref|YP_001896374.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
 gi|238689588|sp|B2SZG2|SYT_BURPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187715926|gb|ACD17150.1| threonyl-tRNA synthetase [Burkholderia phytofirmans PsJN]
          Length = 635

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R++A+    +  +G KY   +       +D  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEIIESIPATDDIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|299066586|emb|CBJ37776.1| threonine tRNA synthetase [Ralstonia solanacearum CMR15]
          Length = 635

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     R E S+ L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GQLVDTSFRIEQSVDLAIVTDKDVDGLDVIRHSTAHLLAYAVKELYPEAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +L +IE  + ++  ++  V   + +R+DA+       +G KY   
Sbjct: 101 GFYYDFAYKRPFTPEDLVAIEKRMAELAKKDEKVTREVWSRDDAVKLFEG--MGEKYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     + ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 159 IIASIPQDQEIGLYREGNFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|302878338|ref|YP_003846902.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
 gi|302581127|gb|ADL55138.1| threonyl-tRNA synthetase [Gallionella capsiferriformans ES-2]
          Length = 637

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 89/216 (41%), Gaps = 22/216 (10%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +    ++ T+  L +  D        I HS  HL+ HA+  +        G  I  +G 
Sbjct: 44  VVDSSFLIETDAQLAIITDKDEAGLEVIRHSMAHLMAHAVKELFSDVQVTIGPVI-ENGF 102

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +D ++ +P T  +L +IE  + +I+ ++L VV  ++ R++A+A      +G  Y   + 
Sbjct: 103 FYDFSYQRPFTPEDLLAIEKRMAEIVKRDLKVVRSVVPRDEAVAYF--KGIGENYKAEII 160

Query: 678 VVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
                 +D  +++      LC G HV STG++ +  ++              + G  A  
Sbjct: 161 ESIPADQDVSLYTQGEFTDLCRGPHVPSTGKLKVFKLMK-------------LAG--AYW 205

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
               ++E L+ +       +  +   +  + E  ++
Sbjct: 206 RGDSKNEMLQRIYGTAWAKKEELESYLHRLEEAEKR 241


>gi|295677048|ref|YP_003605572.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
 gi|295436891|gb|ADG16061.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1002]
          Length = 635

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFSYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R++A+       +G KY   +       ++  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRDEAVEYF--KGIGEKYKAEIIESIPAGDEIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|330926049|ref|XP_003301304.1| hypothetical protein PTT_12769 [Pyrenophora teres f. teres 0-1]
 gi|311324090|gb|EFQ90599.1| hypothetical protein PTT_12769 [Pyrenophora teres f. teres 0-1]
          Length = 305

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 31/250 (12%)

Query: 497 QQGEIVEEAVSGQKVE-------VVFDQTPFYAEAGGQLGDTGCAI-------GDGIR-- 540
           + GE   +A +GQ+ E       +   +T F+A+ GGQ  DTG          GD  +  
Sbjct: 57  KDGE--ADAATGQEAESAPEPHVLTVSETIFHAQGGGQPSDTGTMTATTSPESGDEAKET 114

Query: 541 -LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL-- 597
              +  V+    G  +H  +           L   I+   R   S  H+A H++  A+  
Sbjct: 115 VFTVHQVRSLPTGAILHMGLFPSSPFTPPTHLHQAINIPLRTLHSRLHTAGHVIGLAVNL 174

Query: 598 ---STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
                 L + ++ + +   P+      T + P + A   +I+  V++I+A +LPV     
Sbjct: 175 LIRRGDLPTTITDSKASHYPNAAYVTFTGAIPSSLA--PTIQSTVDEIVALDLPVSIFFW 232

Query: 655 NREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
           +++ A         G     D + V  V+    G +    CGGTHV S GE+  + +   
Sbjct: 233 DKDRARRECFGVGEGADLKGDEMGVRVVDLGGRGSY---PCGGTHVGSLGELGKVVVKGV 289

Query: 714 SSIRAGIRRI 723
                G+ RI
Sbjct: 290 KR-SKGVSRI 298


>gi|254282289|ref|ZP_04957257.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
 gi|219678492|gb|EED34841.1| threonyl-tRNA synthetase [gamma proteobacterium NOR51-B]
          Length = 643

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 20/212 (9%)

Query: 569 MSLVLTIDYQNRRQ--LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
               L+I  +        + HS  HLL  A   +        G  +  DG  +D      
Sbjct: 53  DDAALSIVTERDEAGVEILRHSTAHLLAQATQQLFPDTQVTIGPTV-EDGFYYDFATEHR 111

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T  +L+ IE  + +I+AQ+LPV   + +RE+A      A +G  +  ++     E E+ 
Sbjct: 112 FTPEDLEKIEARMAEIVAQDLPVERVVCSREEAAKLF--AEMGEHFKVQIVEDLPEGEEI 169

Query: 687 GVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK- 741
            ++       LC G HV STG+I    +     +     R +A   Q  R +      K 
Sbjct: 170 SLYRQGEWVDLCRGPHVPSTGKIKAFKLTK---VAGAYWRGDASNEQLQRVYGTAWANKK 226

Query: 742 -----LKSLASFLKVSQGNVVGRVE--EIWEE 766
                L  +A   K     +  ++    + EE
Sbjct: 227 ALKAYLNRIAEAEKRDHRKIAKKLGLFHLQEE 258


>gi|294649364|ref|ZP_06726795.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824734|gb|EFF83506.1| threonine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 640

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 11/205 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +    ++  + ++ +           I HS  HL+ HA+  +        G
Sbjct: 36  VAGRINDRLVDACDLITEDATVQIITQKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  RED IA   A   G
Sbjct: 96  PVI-EEGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPREDVIAEFTAR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E    G++       +C G HV +T  +    +     I     R +A
Sbjct: 153 EEYKLRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFLK 750
              Q  R +     +K K LA+++K
Sbjct: 210 KNEQLQRIYGTAWADK-KQLAAYIK 233


>gi|209516675|ref|ZP_03265528.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
 gi|209502950|gb|EEA02953.1| threonyl-tRNA synthetase [Burkholderia sp. H160]
          Length = 635

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFSYNRPFTPEDLERIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R++A+    +  +G KY   +       ++  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRDEAVEYFKS--IGEKYKAEIIESIPASDEIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|119897370|ref|YP_932583.1| threonyl-tRNA synthetase [Azoarcus sp. BH72]
 gi|166223320|sp|A1K4E1|SYT_AZOSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119669783|emb|CAL93696.1| ThrS protein [Azoarcus sp. BH72]
          Length = 638

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 84/209 (40%), Gaps = 12/209 (5%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G     A+     +  +  L +  D        I HS  HLL HA+  +        G  
Sbjct: 38  GRVDGKAVDLSYCIERDSELAILTDKSAEGVDVIRHSTAHLLAHAVKELFPEAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D ++ +P T  +L++IE  + +++ + LPV   +  R+ A+A   +  +G  
Sbjct: 98  I-ENGFYYDFSYKRPFTPEDLEAIEKRMAELVKRELPVEREVWPRDKAVAFFKS--IGEH 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +       ED  ++       LC G HV STG + +  +     +     R +A  
Sbjct: 155 YKAEIIASIPANEDVSLYRQGEFVDLCRGPHVPSTGRLKVFKLTK---LAGAYWRGDAKN 211

Query: 728 G--QRARSHLMGQDEKLKSLASFLKVSQG 754
              QR       + E L+S    L+ ++ 
Sbjct: 212 EMLQRVYGTAWAKKEDLESYLHMLEEAEK 240


>gi|242804518|ref|XP_002484391.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717736|gb|EED17157.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 324

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 20/230 (8%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQK--KAEGIFVHHAIV 560
           +    +   VV ++T F+ + GGQ  D G  IG  G+   +T V+     +G  +H    
Sbjct: 91  KIGGNEDYVVVTEKTIFHPQGGGQPCDVGSMIGSTGLIFTVTAVRMDAVYDGQVMHLGNF 150

Query: 561 ERG-------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           +            +  ++   ID   R   S  H+A H+L  ++  ++ + V        
Sbjct: 151 KSEDAASSVKTFNSGENIQQAIDVDKRLLYSRLHTAGHVLGASVRHLVKNEVKDFAELKA 210

Query: 614 PDGLRFDVTHSKPITSAELK-SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK- 671
                      + +   + K +I+  V+D IA  L V     +  +    G   ++    
Sbjct: 211 SHFPGAAACEFQGLIDGKWKDAIQQKVDDSIAAKLLVSVEWWDENEFRRRGLDYMIPDSS 270

Query: 672 ---YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                ++ RVV++   D        CGGTHV +T       +   +  + 
Sbjct: 271 LVAPGEKFRVVNIAGLD-----VYPCGGTHVETTDLCGRTTVRKITRKQG 315


>gi|114332291|ref|YP_748513.1| threonyl-tRNA synthetase [Nitrosomonas eutropha C91]
 gi|122313048|sp|Q0ADN4|SYT_NITEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114309305|gb|ABI60548.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Nitrosomonas
           eutropha C91]
          Length = 635

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 83/220 (37%), Gaps = 22/220 (10%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              +  +  LVL  +        I HS  HLL HA+  +  S     G  I  DG  +D 
Sbjct: 48  SEPIEIDSDLVLITNKDPEGLEIIRHSCAHLLAHAVKELFPSAQVTIGPVI-EDGFYYDF 106

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
           ++ +P T  +L +IE  + +I  +NL +  ++ +R  AI  G    LG  Y  ++     
Sbjct: 107 SYERPFTPEDLAAIEKRMQEISRRNLKIERKVWDRSKAI--GFFKDLGEHYKAQIIASIP 164

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
             E   ++S      LC G HV  T  I +  ++    I     R               
Sbjct: 165 NDEPVSLYSQGDFTDLCRGPHVPYTSRIKVFKLMK---IAGAYWR------------GDS 209

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           ++E L+ +     VS       +  + E  ++      K+
Sbjct: 210 KNEMLQRIYGTAWVSSEEQNNYLRRLEEAEKRDHRKLGKQ 249


>gi|300703878|ref|YP_003745480.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071541|emb|CBJ42865.1| threonine tRNA synthetase [Ralstonia solanacearum CFBP2957]
          Length = 635

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     + E S+ L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GHLVDTSFKIEQSVDLAIVTDKDADGVDVIRHSTAHLLAYAVKELYPDAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +L +IE  + ++  ++  V   +  R++A+       +G KY   
Sbjct: 101 GFYYDFAYKRPFTPEDLAAIEKKMAELAKKDEKVTREVWRRDEAVKLFEG--MGEKYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 159 IIGSIPEDQEIGLYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|332109489|gb|EGJ10412.1| threonyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 635

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  +  +G  +D  + +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKQLFPEAQVTIGPTV-ENGFYYDFAYKRPFTPEDLAAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           +N PVV R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KNEPVVRRVLPRDEAVAYF--KGLGEDYKAEIIGSIPSNEDVSLYREGDFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGRLKHFKLMK---VAGAYWR 206


>gi|93353957|gb|ABF08046.1| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 663

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 10/159 (6%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           + SL +  D        I HS  HLL +A+  +        G  I  +G  +D ++ +P 
Sbjct: 82  DASLSIVTDKDADGVDVIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYKRPF 140

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  +L +IE  + ++  ++  V   + NR++A+A   +  +G KY   +       ++ G
Sbjct: 141 TPEDLAAIEKKMTELARKDEKVSREVWNRDEAVALFES--MGEKYKAEIIASIPADQEIG 198

Query: 688 VHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           ++       LC G HV STG++ +  ++    +     R
Sbjct: 199 LYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 234


>gi|224540053|ref|ZP_03680592.1| hypothetical protein BACCELL_04966 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518331|gb|EEF87436.1| hypothetical protein BACCELL_04966 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 155

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S + + I     + D       T
Sbjct: 1   MEQQIQLNDHNKQEYPPMHTCEHIVNRTMMNLFGCGRSVS-AHIERKKSKLDYALETAPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             ++K +E+ VN +IAQ L V T  + +E+A        L    ++ VR+V V     G 
Sbjct: 60  EEDVKRLEEAVNAVIAQGLDVTTEFITQEEAQGRFDLKRLPEDASETVRIVKV-----GN 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIR 721
           +   LC GTHV +T E+    ++S    E + R  +R
Sbjct: 115 YDECLCLGTHVKNTSEVGTFKVISHDWNEEAKRWRMR 151


>gi|330819285|ref|YP_004348147.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
 gi|327371280|gb|AEA62635.1| threonyl-tRNA synthetase [Burkholderia gladioli BSR3]
          Length = 682

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+ + +P T  +L +IE  + ++I 
Sbjct: 90  IRHSCAHLLGHAVKQLYPDANMVIGPVI-EDGFYYDIAYPRPFTPEDLAAIEQRMRELID 148

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
            +  V+ R++ RE+AI        G  Y  R+     E     ++       +C G HV 
Sbjct: 149 LDYEVIKRVLPREEAIRLFRER--GEAYKLRLIEAMPEVAAMNLYFHQEYVDMCRGPHVP 206

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           +T  +    +     +     R +A   Q  R +     +  + LA+ L
Sbjct: 207 NTRFLKAFKLT---RLAGAYWRGDARNPQLQRIYGTAWADA-RQLAAHL 251


>gi|121605747|ref|YP_983076.1| threonyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2]
 gi|166225475|sp|A1VR77|SYT_POLNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120594716|gb|ABM38155.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas
           naphthalenivorans CJ2]
          Length = 635

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + +++A
Sbjct: 71  IRHSAAHLLAYAVKELFPEAQVTIGPVI-ENGFFYDFSYKRPFTPEDLVAIEKRMAELVA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R++ R++A+A   +  LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPVTRRVLPRDEAVAYFKS--LGEYYKAEIIASIPANEDVSLYREGKFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 188 STGKLKFFKLMK---VAGAYWR 206


>gi|253998429|ref|YP_003050492.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|313200504|ref|YP_004039162.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|253985108|gb|ACT49965.1| threonyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|312439820|gb|ADQ83926.1| threonyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 640

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 88/223 (39%), Gaps = 22/223 (9%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  ++ L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 50  VDTSFEIAEDVDLAIITDKDADGLEVIRHSTAHLLAYAVKELFPEAQVTIGPVID-NGFY 108

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L++IE  + ++  ++  V  +++ R++A+A   +  +G  Y   +  
Sbjct: 109 YDFSYKRPFTPEDLEAIEKKMAELAKKDEQVTRKVLPRDEAVAYFQS--IGEAYKAEIIA 166

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                +D  +++      LC G HV STG++    ++    +     R            
Sbjct: 167 SIPADQDVSLYTEGNFTDLCRGPHVPSTGKLKAFKLMK---VAGAYWR------------ 211

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +       + ++   +  + E  ++      K+
Sbjct: 212 GDSNNEMLQRIYGTAWAKKEDLEAYLHMLEEAEKRDHRKLGKQ 254


>gi|77164649|ref|YP_343174.1| threonyl-tRNA synthetase, class IIA [Nitrosococcus oceani ATCC
           19707]
 gi|123757888|sp|Q3JC02|SYT_NITOC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76882963|gb|ABA57644.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Nitrosococcus
           oceani ATCC 19707]
          Length = 644

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 79/203 (38%), Gaps = 11/203 (5%)

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G      +     L  +  L +  +        I HS  HLL  A+  +        G 
Sbjct: 37  GGKIEGRLVDSSYPLEKDTKLTIITERDMDGLEIIRHSCAHLLAQAVKALYPEAQVTIGP 96

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            I  DG  +D  + K  T  +L++IE  + +++ Q+L V   + +RE+A++      +G 
Sbjct: 97  VI-EDGFYYDFAYPKGFTPEDLEAIEAKMRELVEQDLSVHRELKSREEAVSLF--RRMGE 153

Query: 671 KYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           +Y   +       E+  ++       LC G HV ST  +    +     +     R +A 
Sbjct: 154 EYKAEIIASIPSEEEISLYRQGDFVDLCRGPHVPSTARLKAFKLTK---VAGAYWRGDAN 210

Query: 727 TGQRARSHLMGQDEKLKSLASFL 749
                R +     +K K+L ++L
Sbjct: 211 NEMLQRIYGTAWPDK-KALKAYL 232


>gi|300114474|ref|YP_003761049.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
 gi|299540411|gb|ADJ28728.1| threonyl-tRNA synthetase [Nitrosococcus watsonii C-113]
          Length = 644

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 10/179 (5%)

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
            G      +     L  +  L +  +        I HS  HLL  A+  +        G 
Sbjct: 37  GGKIDGRLVDSAYPLERDTKLTIITERDTDGLEIIRHSCAHLLAQAVKALYPEAQVTIGP 96

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            I  DG  +D  + +  T  +L++IE  + +++ Q++ V   + +RE+AI+      +G 
Sbjct: 97  VI-EDGFYYDFAYPEGFTPEDLEAIEAKMRELVEQDIAVHRELKSREEAISLF--RRMGE 153

Query: 671 KYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           +Y   +       E+  ++       LC G HV ST ++    +     +     R +A
Sbjct: 154 EYKAEIIASIPSEEEISLYRQGDFVDLCRGPHVPSTAKLKAFKLTK---VAGAYWRGDA 209


>gi|188995191|ref|YP_001929443.1| hypothetical protein PGN_1327 [Porphyromonas gingivalis ATCC 33277]
 gi|188594871|dbj|BAG33846.1| hypothetical protein PGN_1327 [Porphyromonas gingivalis ATCC 33277]
          Length = 336

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 140/355 (39%), Gaps = 39/355 (10%)

Query: 1   MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60
           M     +   F +F ++ G+     S+LI          ++G      I   +EK     
Sbjct: 1   MITQQEVIEKFFQFTRERGYAKKERSNLISPYFNNEFNLSAGHQYVIPILQNEEKEELIK 60

Query: 61  VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM--LGNFSFGGYFKERAIQLAWDL--LTK 116
           +   + C+R      DL+ +G +N H   FEM  +G F +  + KE+ + +  D+  L +
Sbjct: 61  IAINEICIR----RIDLEKLGASNHHLLMFEMGVMGVFGYIDHIKEQLLSILRDVIDLIE 116

Query: 117 EFDLDQRRLYITV----------YDEDEEAFKLWKKISGLSADKIIRITTNDNF-WSMAE 165
               D  ++Y +V          Y  D  +++      G+    I++     NF +S   
Sbjct: 117 LLGFDMNQIYFSVSEGASVLHKKYPADTLSYECLLH-HGIRPLNIVKTKGRQNFIFSNGV 175

Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225
             P G   EIF+ +GE               + EI ++   ++   ++ +   +  M+I 
Sbjct: 176 GRPAGNSIEIFYKRGE--------------DFTEIASINIYKY-LFSEGKLHPMTNMAIG 220

Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSS 283
            G G +R+  +L      +D   F    +  + +    M+Y  N    +R I++ +++  
Sbjct: 221 GGFGFDRITYLLNGYNRVFDTPPFSLFSEQIKDLFRNEMEYRLNQDKINR-ILELIKTLV 279

Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL-LPALCTEMGSAY 337
           F+  DG  P N   G +++  + +       L   E  ++ + + A+     S Y
Sbjct: 280 FIELDGQKPDNSPHGKIMKGFIDKLKSEINYLELQENDVVEMGVSAVKEHYKSRY 334


>gi|319644906|ref|ZP_07999139.1| hypothetical protein HMPREF1012_00172 [Bacillus sp. BT1B_CT2]
 gi|317392715|gb|EFV73509.1| hypothetical protein HMPREF1012_00172 [Bacillus sp. BT1B_CT2]
          Length = 193

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 14/189 (7%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  I     R+  + G R  +    + + +  L   L   +G +   V+ + E  +KL  
Sbjct: 5   EEKI-----RLYFVCGNRVITQFDQKQKAIVELTGLLNRPEGELSEAVKRLLENVKKLDK 59

Query: 773 IHA---KRKLQLNVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
                 ++ LQ    +L        D   +    S+   +EL+ +   +  + +  +I  
Sbjct: 60  ALLESYEKNLQYEANELLAKSAIQNDTVMVIETFSDRSIQELQKLAKMIADREKRALIFF 119

Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
           +    + +  ++    E   ++ N  DL + +  ++  G GGG    AQ GG      ++
Sbjct: 120 LS-ENDHRFQLVCGRGE--ANKMNMRDLMQEALSLI-DGKGGGNKMFAQGGGTASFTKEK 175

Query: 888 AIAGVASFL 896
            +  V + +
Sbjct: 176 FMKNVMNII 184


>gi|293376470|ref|ZP_06622699.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325842051|ref|ZP_08167588.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
 gi|292644892|gb|EFF62973.1| threonine--tRNA ligase [Turicibacter sanguinis PC909]
 gi|325489773|gb|EGC92129.1| threonine--tRNA ligase [Turicibacter sp. HGF1]
          Length = 645

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 23/259 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G        +I  G+R      +K        H       +  +  + L  + +    
Sbjct: 15  ENGVTADAIAHSISPGLR------KKCVAAKINGHLYDLTRPIEADAKIELITNDRPEAW 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             INHSA HL+  A+  +        G  I  DG  +D+     I+ A+L +IE  +  I
Sbjct: 69  EIINHSAAHLMAAAIKRLYPDAKFGVGPAI-EDGFYYDIDTESKISEADLPAIEKMMQKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            ++ LP++ + ++RE+A    AA     +  D ++   +         + LC G HV +T
Sbjct: 128 SSEALPIIRQELSREEAKELFAADEYKLELIDAIKEGEIITTYSEGDFTDLCSGVHVPNT 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            ++    ++S   +     R                ++ L  +     +S+  +   +  
Sbjct: 188 KDVKFFKLLS---VAGAYWR------------GDSDNKMLTRIYGAAALSKDALADHL-R 231

Query: 763 IWEEYRKLQLIHAKRKLQL 781
           I EE ++       R+L+L
Sbjct: 232 ILEERKERDHKKLGRELEL 250


>gi|37784160|gb|AAO86574.1| alanyl-tRNA synthetase [Hydrogenobacter hydrogenophilus]
          Length = 57

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 40 NSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96
          N+GMV FKN+F G EK  Y    + QKC+R  GKHNDL++VG T+RHHTFFEM G F
Sbjct: 1  NAGMVQFKNVFLGIEKRPYTRAVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMKGEF 57


>gi|154492740|ref|ZP_02032366.1| hypothetical protein PARMER_02377 [Parabacteroides merdae ATCC
           43184]
 gi|154087045|gb|EDN86090.1| hypothetical protein PARMER_02377 [Parabacteroides merdae ATCC
           43184]
          Length = 155

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+A H+L+  +  + G   S+N + I     + D    +  T
Sbjct: 1   MEQEIQLNEHNKQEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYELQEEPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  ++ +E  +N++I ++LPV    + + +A      + L    ++ +R+V +     G 
Sbjct: 60  AEMMEEVERRINEVIDRHLPVTIEFVPKAEAGKIVDLSKLPEDASETLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIV 711
           + +  C G HV++T EI    ++
Sbjct: 115 YDTCACIGAHVNNTSEIGHFKML 137


>gi|296163127|ref|ZP_06845898.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
 gi|295886629|gb|EFG66476.1| threonyl-tRNA synthetase [Burkholderia sp. Ch1-1]
          Length = 635

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYNRPFTPEDLEKIERRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R++A+    +  +G KY   +       ++  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEIIESIPATDEIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|161621305|ref|YP_583315.2| threonyl-tRNA synthetase [Cupriavidus metallidurans CH34]
          Length = 635

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 10/159 (6%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           + SL +  D        I HS  HLL +A+  +        G  I  +G  +D ++ +P 
Sbjct: 54  DASLSIVTDKDADGVDVIRHSTAHLLAYAVKELYPDAQVTIGPVID-NGFYYDFSYKRPF 112

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
           T  +L +IE  + ++  ++  V   + NR++A+A   +  +G KY   +       ++ G
Sbjct: 113 TPEDLAAIEKKMTELARKDEKVSREVWNRDEAVALFES--MGEKYKAEIIASIPADQEIG 170

Query: 688 VHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           ++       LC G HV STG++ +  ++    +     R
Sbjct: 171 LYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|194289383|ref|YP_002005290.1| threonyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|238692758|sp|B3R4J1|SYT_CUPTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193223218|emb|CAQ69223.1| threonine tRNA synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 635

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 10/171 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  +  L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSYKIERDAELAIVTDKDADGVDVIRHSTAHLLAYAVKELYPDAQVTIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L +IE  + ++  ++  V   + NR++A+A   +  +G KY   +  
Sbjct: 104 YDFAYKRPFTPEDLAAIEKKMTELARKDEKVTREVWNRDEAVALFES--MGEKYKAEIIG 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                ++ G++       LC G HV STG++ +  ++    +     R +A
Sbjct: 162 SIPADQEIGLYREGNFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWRGDA 209


>gi|91784428|ref|YP_559634.1| threonyl-tRNA synthetase [Burkholderia xenovorans LB400]
 gi|123358618|sp|Q13WF7|SYT_BURXL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91688382|gb|ABE31582.1| Ser-tRNA(Thr) hydrolase [Burkholderia xenovorans LB400]
          Length = 635

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +++P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYNRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R++A+    +  +G KY   +       ++  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEIIESIPATDEIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|224826514|ref|ZP_03699615.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
 gi|224601115|gb|EEG07297.1| threonyl-tRNA synthetase [Lutiella nitroferrum 2002]
          Length = 632

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 11/202 (5%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +    ++  +  L +  D        I HS  HLL +A+  +        G  
Sbjct: 38  GRVDGRLVDTSHVIDRDADLAIITDKDADGLSIIRHSTAHLLAYAVKELFPEAQVTIGPE 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D ++ +P T  +L +IE  + ++  +++PV    + R++AIA   +  +G  
Sbjct: 98  I-ENGFYYDFSYKRPFTPEDLVAIEKKMGELAKKDIPVERYELPRDEAIAYFKS--IGEH 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E   ++       LC G HV STG++ +  ++    +     R ++  
Sbjct: 155 YKAEIIESIPQGEVLSLYREGDFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWRGDSKN 211

Query: 728 GQRARSHLMGQDEKLKSLASFL 749
               R +     +K + LA +L
Sbjct: 212 EMLQRVYGTAWAKK-EDLAQYL 232


>gi|307730402|ref|YP_003907626.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
 gi|307584937|gb|ADN58335.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1003]
          Length = 635

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +S+P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYSRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R++A+    +  +G KY   +       ++  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEIIQSIPATDEIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|126667900|ref|ZP_01738865.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
 gi|126627560|gb|EAZ98192.1| threonyl-tRNA synthetase [Marinobacter sp. ELB17]
          Length = 641

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL   +  +        G  I  DG  +D  + +P T+ +L  IE  + ++  
Sbjct: 71  IRHSTAHLLAMTVKELFPEAQVTIGPVID-DGFYYDFKYDRPFTNEDLARIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           Q+LPV   +M+R +A+   ++  +G +Y  R+       ED   +       LC G HV 
Sbjct: 130 QDLPVSRSVMSRSEAVELFSS--MGEEYKVRIIEDIPGAEDLSFYRQGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    +   S                A       +E+L+ +      ++ ++   V
Sbjct: 188 STGKMKAFKLTKVSG---------------AFWRGDTNNEQLQRVYGTAWANKKDLKAYV 232

Query: 761 EEIWEEYRKLQLIHAKR 777
             I E  ++      K+
Sbjct: 233 HRIEEAEKRDHRKVGKK 249


>gi|220934623|ref|YP_002513522.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|259516780|sp|B8GRI1|SYT_THISH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219995933|gb|ACL72535.1| threonyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 643

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  + SL +  D        I HS  HLL  A+  +  S     G  I  +G  
Sbjct: 45  VDTSHLIEDDASLAIITDRDPEGLEVIRHSTAHLLAQAVKDLFPSAQVTIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D    +P    +L+ IE  + ++   +LPV   +M+R++A+        G +Y  ++  
Sbjct: 104 YDFAFERPFHPDDLEKIEARMKELAKADLPVSRSVMDRDEAVDFFRDQ--GEEYKAQIIA 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                E   ++       LC G HV STG++    +     +     R
Sbjct: 162 DIPAGETISLYKQGEFIDLCRGPHVPSTGKLKAFKLTK---VAGAYWR 206


>gi|226954309|ref|ZP_03824773.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834935|gb|EEH67318.1| threonyl-tRNA synthetase [Acinetobacter sp. ATCC 27244]
          Length = 640

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 11/205 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +    ++  + ++ +           I HS  HL+ HA+  +        G
Sbjct: 36  VAGRINDRLVDACDLITEDATVQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  RED IA   A   G
Sbjct: 96  PVI-EEGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPREDVIAEFTAR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E    G++       +C G HV +T  +    +     I     R +A
Sbjct: 153 EEYKLRLIADMPEETQMGLYYHQDYLDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFLK 750
              Q  R +     +K K LA+++K
Sbjct: 210 KNEQLQRIYGTAWADK-KQLAAYIK 233


>gi|241258899|ref|YP_002978783.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863369|gb|ACS61032.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 292

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 108/320 (33%), Gaps = 83/320 (25%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
             + +F    G   +   S+ P +D T +F ++GM  +K +F   +      V   Q C+
Sbjct: 14  QQYQDFCLSKGINFIRIESVRPHDD-TTLFCSAGMQQYKPLF--SDPSHSGTVANSQACL 70

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL-TKEFDLDQRRLYI 127
           R G    DLD +G    H   F MLG FSF       AI    + L T     D    ++
Sbjct: 71  RMG----DLDEIG-DGTHLLHFSMLGLFSFREMTVGNAIDFWLEFLETVGLVPD----HV 121

Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187
           T++ +       W  + G    ++  +   +  WS       G C+E + D         
Sbjct: 122 TIHPDRLVE---WTPLYG---GRVPIVPDPECIWSDGGIS--GYCTEFYKDG-------- 165

Query: 188 PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
                     +EI N+V                   ID G G ER+  ++     +   D
Sbjct: 166 ----------VEIGNIV------NPLGT-------CIDVGFGAERLDMIVSGAPQD---D 199

Query: 248 LFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307
               L +                          +   ++  G  P N+ +GYVLR+++RR
Sbjct: 200 ALGTLCE--------------------------TVMTIVESGYRPGNKEQGYVLRKLLRR 233

Query: 308 AMCYARLLGYTEPLMMHLLP 327
                  L    P     + 
Sbjct: 234 IHKMGGTL--DHPFFAEEVE 251


>gi|160889513|ref|ZP_02070516.1| hypothetical protein BACUNI_01937 [Bacteroides uniformis ATCC 8492]
 gi|270296644|ref|ZP_06202843.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156861030|gb|EDO54461.1| hypothetical protein BACUNI_01937 [Bacteroides uniformis ATCC 8492]
 gi|270272631|gb|EFA18494.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 155

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+  H+++  +  + G   S + + I     + D   +   T
Sbjct: 1   MEQQPHLNDHNKQEYPPMHTTEHIINQTMIRLFGCGRSIS-AHIERKKSKLDYLLAACPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E+K +E+ VN++IA+ LPV T  + +E+A        L    ++ VRVV V     G 
Sbjct: 60  EEEIKKLEEAVNEVIARQLPVTTEFITQEEAQGRFDLERLPDGASETVRVVKV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIR 721
           +   LC G HV +T EI    I+S    E + R  +R
Sbjct: 115 YDECLCIGVHVENTSEIGTFKIISHDWDEEAKRWRMR 151


>gi|241663242|ref|YP_002981602.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
 gi|240865269|gb|ACS62930.1| threonyl-tRNA synthetase [Ralstonia pickettii 12D]
          Length = 635

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  +  L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSFTIDRDAKLAIITDKDADGVDVIRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L +IE  + ++  ++  V   +++R++A+       +G KY   +  
Sbjct: 104 YDFAYKRPFTPEDLVAIEKKMTELAKKDEKVTREVLSRDEAVKLFEG--MGEKYKAEIIA 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPEDQEIGLYREGNFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|323526736|ref|YP_004228889.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
 gi|323383738|gb|ADX55829.1| threonyl-tRNA synthetase [Burkholderia sp. CCGE1001]
          Length = 635

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYHRPFTPEDLERIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R++A+    +  +G KY   +       ++  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRDEAVDYFKS--IGEKYKAEIIESIPASDEIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|207723063|ref|YP_002253475.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
 gi|206588254|emb|CAQ18812.1| threonyl-trna synthetase protein [Ralstonia solanacearum MolK2]
          Length = 344

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     + E S+ L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GHLVDTSFKIEQSVDLAIVTDKDADGLDVIRHSTAHLLAYAVKELHPDAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +L +IE  + ++  ++  V   +  R +A+       +G KY   
Sbjct: 101 GFYYDFAYKRPFTPEDLVAIEKKMAELAKKDEKVTREVWRRNEAVKLFEG--MGEKYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 159 IIASIPEDQEIGLYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|325279389|ref|YP_004251931.1| Threonyl/alanyl tRNA synthetase SAD [Odoribacter splanchnicus DSM
           20712]
 gi|324311198|gb|ADY31751.1| Threonyl/alanyl tRNA synthetase SAD [Odoribacter splanchnicus DSM
           20712]
          Length = 161

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+  M   + ++  N+++    H+A H+L+  +  + G   S+N + I     + D   S
Sbjct: 4   LKNYMEQEIQLNGHNKQEYPPMHTAEHILNQTMIRMFGCERSKN-THIERKKSKCDYILS 62

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
              T+  +  IE+ VN++I Q+LPV T  + RE+       + L    +  +R+V +   
Sbjct: 63  VEPTAEMITEIENRVNEVIGQDLPVTTCFVTREEVPEGVDLSKLPEDASATLRIVKI--- 119

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713
             G + +  C G HV +T EI    I+S 
Sbjct: 120 --GEYDTCACIGQHVGTTAEIGKFKIISW 146


>gi|307822740|ref|ZP_07652971.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
 gi|307736344|gb|EFO07190.1| threonyl-tRNA synthetase [Methylobacter tundripaludum SV96]
          Length = 635

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 22/217 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + +L L           I HS  HLL  A+  +  S     G  I  +G  +D  +
Sbjct: 50  PIDQDATLQLITAKDEDGITVIRHSTAHLLAQAVKQLFPSAQVTIGPVI-ENGFFYDFAY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L +IE  +  ++A++ P+   +++R++A+       LG  Y   +       
Sbjct: 109 ERPFTPEDLSAIEKKMEQLVAEDYPIHRSVLSRDEAVKFF--RDLGEAYKAEIIESIPAN 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ED  ++       LC G HV ST ++ +  ++    I     R                +
Sbjct: 167 EDLSLYEQGGFTDLCRGPHVPSTSKLKVFKLMK---IAGAYWR------------GNSDN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
           E L+ +       + ++   +  + E  ++     AK
Sbjct: 212 EMLQRIYGTAWGDKKDLQAYLHRLEEAEKRDHRKLAK 248


>gi|218260223|ref|ZP_03475609.1| hypothetical protein PRABACTJOHN_01270 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224675|gb|EEC97325.1| hypothetical protein PRABACTJOHN_01270 [Parabacteroides johnsonii
           DSM 18315]
          Length = 154

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+ +    H+A H+L+  +  + G   S+N + I     + D    +  T
Sbjct: 1   MEQEIQLNEHNKAEYPPMHTAEHILNQTMVRMFGCPRSKN-AHIERKKSKCDYELPEEPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           +  +  +E  VN++I ++LPV    + + +A      + L    ++ +R+V +     G 
Sbjct: 60  AEIMAEVERRVNEVIDRHLPVTIEFVPKAEAKEIVDLSKLPEDASNTLRIVRI-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIV 711
           +    C G HV++T EI    ++
Sbjct: 115 YDVCACIGAHVNNTSEIGHFKML 137


>gi|77460408|ref|YP_349915.1| metal-dependent hydrolase [Pseudomonas fluorescens Pf0-1]
 gi|77384411|gb|ABA75924.1| hypothetical protein Pfl01_4187 [Pseudomonas fluorescens Pf0-1]
          Length = 208

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 36/224 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +    E+++      +  VV   T F+ + GGQ  DTG   GD   L++     +     
Sbjct: 12  LKANVEVLDCTPQENEFAVVLRATLFHPQGGGQPCDTGWI-GDSQVLRVV----QEPDRI 66

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H        +   M+  + +D + RR  +  HSA HL+ H +  +         +   P
Sbjct: 67  IHFV---DQPMPLGMT-QIRVDEERRRFNTRMHSAGHLIGHFVQAMG---WMPIKAHHWP 119

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           D  R            + + ++  +   I  +LP +T +  RE A   G     G     
Sbjct: 120 DEGRVQFKPGDSAQEVDAQIVQYGIGQWIEHDLPRLTSL--REGAREIG----FGE---- 169

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                   Y          CGGTHV S  ++  + I S S  + 
Sbjct: 170 -----LPAYG---------CGGTHVRSLKDLGTVTIASLSQKKG 199


>gi|266623641|ref|ZP_06116576.1| alanyl-tRNA synthetase [Clostridium hathewayi DSM 13479]
 gi|288864565|gb|EFC96863.1| alanyl-tRNA synthetase [Clostridium hathewayi DSM 13479]
          Length = 182

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 12/157 (7%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           + +V+ D+T FY E GGQ GDTG        +++ DV +KA  I         G L    
Sbjct: 28  RYQVMLDRTGFYPEGGGQPGDTGRL----GPVKVLDVHEKAGEIIH----ETDGPLEAGT 79

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++  TID++ R     NHS  H+    +    G      G  +  + +  D         
Sbjct: 80  AVAGTIDWERRFGYMQNHSGEHIFSGLVHKKYGF--DNVGFHMGSEEVTVDFNGVITAEE 137

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
            E       VN  IA+NLP+        +       +
Sbjct: 138 LEEIE--TEVNRKIAENLPIRELYPAAGELEHMEYRS 172


>gi|262369846|ref|ZP_06063173.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
 gi|262314885|gb|EEY95925.1| threonyl-tRNA synthetase [Acinetobacter johnsonii SH046]
          Length = 640

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+  +KP T  ++ +IE+ +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPEAKMVIGPVI-EDGFYYDIFSAKPFTPEDMLAIEERMKKLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  V+ ++  R++ IA   A   G  Y  R+     E  + G++       +C G HV 
Sbjct: 130 QDYDVIKKMTPRDEVIAEFTAR--GEDYKLRLIADMPEETEMGLYYHQDYLDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T  +    +   S       R +A   Q  R +     +K K LA+++K
Sbjct: 188 NTKFLKAFKLTKMSG---AYWRGDAKNEQLQRIYGTAWADK-KQLAAYIK 233


>gi|145589014|ref|YP_001155611.1| threonyl-tRNA synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189083617|sp|A4SX33|SYT_POLSQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145047420|gb|ABP34047.1| Ser-tRNA(Thr) hydrolase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 640

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 13/197 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EA  ++ D   +IG G+       +    GI     +    ++  +  L +  D      
Sbjct: 15  EAPVRVADVAQSIGSGLA------KAALGGIVDGQMVDTSFVIDKDSHLAIITDKSPEAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L ++E  + ++
Sbjct: 69  EIVRHSTAHLLAYAVKELFPEAQVTIGPVI-ENGFYYDFSYHRPFTPDDLVALEKKMTEL 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
             ++ PVV  +M R++A+        G  Y   +     + ED  +++      LC G H
Sbjct: 128 AKKDEPVVRTVMPRDEAVEFFKQQ--GENYKAELIASIPQGEDVSLYAEGKFTDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESS 715
           V STG++ +  ++  + 
Sbjct: 186 VPSTGKLKVFKLMKLAG 202


>gi|262374306|ref|ZP_06067582.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
 gi|262310864|gb|EEY91952.1| threonyl-tRNA synthetase [Acinetobacter junii SH205]
          Length = 640

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 83/205 (40%), Gaps = 11/205 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +    ++  + ++ +         + I HS  HL+ HA+  +        G
Sbjct: 36  VAGRINDRLVDACDLITEDATVQIITPKDEEGLVIIRHSCAHLVGHAVKQLFPEAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ IA   A   G
Sbjct: 96  PVI-EEGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIAEFTAR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+          G++       +C G HV +T  +    +     I     R +A
Sbjct: 153 EEYKLRLIADMPNETQMGLYYHQDYLDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFLK 750
              Q  R +     +K K LA+++K
Sbjct: 210 KNEQLQRIYGTAWADK-KQLAAYIK 233


>gi|113867357|ref|YP_725846.1| threonyl-tRNA synthetase [Ralstonia eutropha H16]
 gi|123134164|sp|Q0KBZ3|SYT_RALEH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113526133|emb|CAJ92478.1| Threonyl-tRNA synthetase [Ralstonia eutropha H16]
          Length = 635

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  +  L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSYRIDRDAELAIVTDKDADGVDVIRHSTAHLLAYAVKELYPEAQVTIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L +IE  + ++  ++  VV  + NR++A+A   +  +G KY   +  
Sbjct: 104 YDFAYKRPFTPEDLAAIEKKMTELARKDEKVVREVWNRDEAVALFES--MGEKYKAEIIA 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                ++ G++       LC G HV STG++ +  ++    +     R +A
Sbjct: 162 SIPADQEIGLYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWRGDA 209


>gi|240080190|ref|ZP_04724733.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 648

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|194098020|ref|YP_002001068.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|193933310|gb|ACF29134.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945]
          Length = 648

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIE 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|160871539|ref|ZP_02061671.1| threonyl-tRNA synthetase [Rickettsiella grylli]
 gi|159120338|gb|EDP45676.1| threonyl-tRNA synthetase [Rickettsiella grylli]
          Length = 642

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 12/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D   S P T  +L +IE  + +++ 
Sbjct: 71  IRHSTAHLLAHAVKQLFPMAQVTMGPVI-ENGFYYDFALSHPFTPEDLLNIEKRMRELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           Q++P+    + R++AI    A  LG  Y   +     + E   ++       LC G HV 
Sbjct: 130 QDIPIQRSTLPRDEAIQFFKA--LGEDYKAEIITAIPKEEVLSLYREGDFVDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ--DEKLKSLASFLKVSQG 754
           S      L +   + +     R +A      R +      ++ L      LK ++ 
Sbjct: 188 S---TGKLKVFKLTHVAGAYWRGDAKNEMLQRIYGTAWLTEKDLNEHLYLLKEAEK 240


>gi|322704245|gb|EFY95842.1| threonyl/alanyl tRNA synthetase [Metarhizium anisopliae ARSEF 23]
          Length = 330

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 96/283 (33%), Gaps = 37/283 (13%)

Query: 470 KEDRKVLCQKPPIDLTNGVSSI--VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527
           K            +L   V S+    ++     ++ +  S     +V  +T F+ + GGQ
Sbjct: 6   KTKHVYQYDGKLTELVTKVHSVRSFASLEDANRLLFKNGSDDDFVMVTSETIFHPQGGGQ 65

Query: 528 LGDTGCAIGD-------------GIRLQITDVQK--KAEGIFVHHAIVERG----ILRTE 568
             D G                       +  V+         +H            ++  
Sbjct: 66  PSDEGFITWSPNGTTAADSPPDHTSSFHVKAVRIDAVHGSQVLHLGSFPTPAAASQVQPG 125

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV---SQNGSCITPDGLRFDVTHSK 625
             +   +D + R   S  H+A H+L  A+ ++L + +    +  +   PD    +   + 
Sbjct: 126 DQVTQVLDVEKRLLHSRLHTAGHVLGSAVRSLLETEIPGFDELKASHFPDSAGCEFKGAI 185

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVS 680
                E   I+  V++ +A+++PV        D    G A L+  +       D+ RVV 
Sbjct: 186 EGKWKEP--IQRRVDEYLARSMPVEVEFWTERDFCREGLARLIPDRRLLPPGEDKFRVVR 243

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           +   D        CGGTHV +T        V + +   G  R+
Sbjct: 244 IVGAD-----VYPCGGTHVDTTDLCGETT-VKKIARSKGTSRV 280


>gi|240122983|ref|ZP_04735939.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 648

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|73540970|ref|YP_295490.1| threonyl-tRNA synthetase [Ralstonia eutropha JMP134]
 gi|123732957|sp|Q472N7|SYT_RALEJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72118383|gb|AAZ60646.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Ralstonia
           eutropha JMP134]
          Length = 635

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 10/171 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  +++L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSYSIDRDVALAIITDKDADGVDVIRHSTAHLLAYAVKELYPDAQVTIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L +IE  + ++  ++  V   + NR++A+A   +  +G KY   +  
Sbjct: 104 YDFAYKRPFTPEDLAAIEKKMTELSRKDEKVTREVWNRDEAVALFES--MGEKYKAEIIA 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                ++ G++       LC G HV STG++ +  ++    +     R +A
Sbjct: 162 SIPADQEIGLYREGKFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWRGDA 209


>gi|262374878|ref|ZP_06068112.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
 gi|262309891|gb|EEY91020.1| threonyl-tRNA synthetase [Acinetobacter lwoffii SH145]
          Length = 640

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE+ +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFYYDIWMPRPFTLDDMAAIEERMKKLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R++ IA   A   G +Y  R+     E    G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRDEVIAEFTAR--GEEYKLRLIADMPEETQMGLYYHQDYLDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T  +    +     I     R +A   Q  R +     +K K LA+++K
Sbjct: 188 NTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIYGTAWADK-KQLAAYVK 233


>gi|71066652|ref|YP_265379.1| threonyl-tRNA synthetase [Psychrobacter arcticus 273-4]
 gi|123775558|sp|Q4FPW3|SYT_PSYA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71039637|gb|AAZ19945.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychrobacter
           arcticus 273-4]
          Length = 644

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G    H +     +  +  + +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVDGHLVDAHDPIVADAKVEIVTPRDDDGVDIIRHSCAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+    P T   + +IE  + ++I Q+  V+ +I  R + I        G
Sbjct: 96  PVID-DGFYYDIYSETPFTPEHMAAIEKRMMELIKQDYDVIKKITPRAEVIKIFEER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  ++       E  G++       +C G HV +T  + +  +   S           
Sbjct: 153 EDYKLKLINDMPGEEAFGLYHHQEYVDMCRGPHVPNTRFLKVFKLTKMSG---------- 202

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                A      ++E+L+ +       + ++   ++ I E  ++      K 
Sbjct: 203 -----AYWRGDAKNEQLQRIYGTAWADKKDLKTYIQRIEEAEKRDHRKIGKA 249


>gi|253577580|ref|ZP_04854892.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843049|gb|EES71085.1| threonyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 645

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 19/208 (9%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI-DYQN 579
           YAE G  L D   +I  G+R      +    G     A+     L     + +   D Q 
Sbjct: 15  YAE-GSSLEDVAASISSGLR------KNALAGKINGVAVDLNTKLVDGAKVEIITGDSQE 67

Query: 580 RRQLSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             ++   HS+ HL+  A+  + G   V      +  DG  +D+    P+   +L+ IE  
Sbjct: 68  GLEIMR-HSSAHLMAQAVKRLFGNKEVKLGIGPVIEDGFYYDMDLEHPLNPEDLQKIEKE 126

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALC 694
           +  II +NLP+  R ++RE+A+A      L   Y   +     E     ++       LC
Sbjct: 127 MERIIGENLPITRREVSREEALAIYT--ELDDPYKLEIIRELPEGSVISIYDQGEFFDLC 184

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            G HV STG+I +  ++S   +     R
Sbjct: 185 RGPHVPSTGKIKVFKLLS---VAGAYWR 209


>gi|240115143|ref|ZP_04729205.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|291044371|ref|ZP_06570080.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|291011265|gb|EFE03261.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
          Length = 648

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|299771535|ref|YP_003733561.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
 gi|298701623|gb|ADI92188.1| threonyl-tRNA synthetase [Acinetobacter sp. DR1]
          Length = 640

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   +P T  ++ +IE+ +  +I Q+  VV ++  R++ IA   A   G +Y  R+  
Sbjct: 104 YDIWMPRPFTLDDMAAIEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYKLRLIA 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E    G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEETQMGLYYHQDYLDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|163857146|ref|YP_001631444.1| threonyl-tRNA synthetase [Bordetella petrii DSM 12804]
 gi|229557977|sp|A9IRH6|SYT_BORPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|163260874|emb|CAP43176.1| thrS [Bordetella petrii]
          Length = 650

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ 
Sbjct: 75  MIRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMTELA 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHV 699
            ++  V      R+DA+A   +  +G  Y   +       E   ++       LC G HV
Sbjct: 134 RKDETVTREEWTRDDAVAYFKS--IGEDYKAEIIASIPANETLSLYREGNFVDLCRGPHV 191

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            STG++ +  ++    +     R
Sbjct: 192 PSTGKLKVFKLMK---VAGAYWR 211


>gi|293610405|ref|ZP_06692706.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|292827637|gb|EFF86001.1| threonyl-tRNA synthetase [Acinetobacter sp. SH024]
 gi|325124561|gb|ADY84084.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2]
          Length = 640

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   +P T  ++ +IE+ +  +I Q+  VV ++  R++ IA   A   G +Y  R+  
Sbjct: 104 YDIWMPRPFTLDDMAAIEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYKLRLIA 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E    G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEETQMGLYYHQDYLDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|300691315|ref|YP_003752310.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
 gi|299078375|emb|CBJ51025.1| threonine tRNA synthetase [Ralstonia solanacearum PSI07]
          Length = 635

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     + E ++ L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GQLVDTSFKIEQNVDLAIVTDKDADGLDVIRHSTAHLLAYAVKELYPDAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T  +L +IE  + ++  ++  V   +  R++A+       +G +Y   
Sbjct: 101 GFYYDFAYKRPFTPEDLVAIEKRMAELAKKDEKVTREVWRRDEAVKLFEG--MGERYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +     E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 159 IIASIPEDQEIGLYREGSFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|255320853|ref|ZP_05362027.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262380254|ref|ZP_06073409.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
 gi|255302022|gb|EET81265.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SK82]
 gi|262298448|gb|EEY86362.1| threonyl-tRNA synthetase [Acinetobacter radioresistens SH164]
          Length = 640

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 41/229 (17%)

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQL D    I +   LQI    K  EG+ +                             I
Sbjct: 42  GQLVDASDLITEDATLQII-TPKDEEGVEI-----------------------------I 71

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE+ +  +I Q
Sbjct: 72  RHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFYYDIWMPRPFTLDDMAAIEERMKKLIDQ 130

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSS 701
           +  V+ ++  R++ IA   A   G +Y  R+     E    G++       +C G HV +
Sbjct: 131 DYDVIKKMTPRDEVIAEFTAR--GEEYKLRLIADMPEETQMGLYYHQDYLDMCRGPHVPN 188

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           T  +    +     I     R +A   Q  R +     +K K LA+++K
Sbjct: 189 TKFLKSFKLTK---ISGAYWRGDAKNEQLQRIYGTAWADK-KQLAAYIK 233


>gi|260551943|ref|ZP_05825805.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
 gi|260405346|gb|EEW98841.1| threonyl-tRNA synthetase [Acinetobacter sp. RUH2624]
          Length = 640

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   +P T  ++ +IE+ +  +I Q+  VV ++  R++ IA   A   G +Y  R+  
Sbjct: 104 YDIWMPRPFTLDDMAAIEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYKLRLIA 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E    G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEETQMGLYYHQDYLDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|114776996|ref|ZP_01452016.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
 gi|114552517|gb|EAU54977.1| threonyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1]
          Length = 634

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 22/222 (9%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     L    ++ L  +  +     I HS +HL+  A+  +        G  I  DG  
Sbjct: 44  VDVSHQLHDGDTVSLITEKSDEGLEVIRHSTSHLMAMAVQEVFPGAQVTIGPVI-EDGFY 102

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +  T  +L  IE+ +  +  Q LP+     +R+ AIA      +G  Y  ++  
Sbjct: 103 YDFAYERAFTPDDLTKIEEKMRQLSNQKLPITREEWDRDAAIAHFEG--IGEIYKAKLIG 160

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
                E   ++       LC G HV +TG +    ++  S                A   
Sbjct: 161 RIPAGETVSLYKQGEWSDLCRGPHVPNTGVLKHFKLMKVSG---------------AYWE 205

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
               +E+L  +      S+G++   +  + E  ++     AK
Sbjct: 206 GNSDNEQLCRIYGTAWASKGDLKAYLTRLEEAEKRDHRKLAK 247


>gi|292655832|ref|YP_003535729.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
 gi|291370664|gb|ADE02891.1| threonyl-tRNA synthetase [Haloferax volcanii DS2]
          Length = 643

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 16/217 (7%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
               ++ D T    E G  + D   AIG G+       +    G+     + +   L   
Sbjct: 3   DIAVILPDGTELSVEEGATVRDAAFAIGPGL------GKDTVAGVVDGELVDKETPLHDG 56

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             LV+  D  +     + HSA H+   AL  +        G   T DG  +DVT S  + 
Sbjct: 57  ADLVIVTDQSDEYLDVLRHSAAHVFAQALQRLHPEAKLTIGPW-TDDGFYYDVT-SVDLE 114

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YED 685
             +L++IED + DII ++L +   +++RE+A+   A         +       E   Y+ 
Sbjct: 115 QEDLEAIEDEMRDIIEEDLDIERVVVDREEALEKYADNPYKRDILEEEAAGDDELSFYQQ 174

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G      LC G HV STGEI  + ++   +I A   R
Sbjct: 175 GEFED--LCKGPHVESTGEIGAVKLL---NISAAYWR 206


>gi|32453275|gb|AAP82770.1| alanyl tRNA synthetase [Thermocrinis ruber DSM 12173]
          Length = 55

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          FTN+GMVPFKN+F G EK  Y    + QKC+R  GKHNDL+ VG T+RHHTFFEM
Sbjct: 1  FTNAGMVPFKNVFLGLEKRPYTRAVSCQKCLRVSGKHNDLEQVGYTSRHHTFFEM 55


>gi|222110646|ref|YP_002552910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
 gi|254783520|sp|B9MHX8|SYT_DIAST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221730090|gb|ACM32910.1| threonyl-tRNA synthetase [Acidovorax ebreus TPSY]
          Length = 639

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFYYDFSYKRPFTPEDLAAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PVV R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPVVRRVLPRDEAVAYF--KGLGEHYKAEIIASIPTNEDVSLYREGGFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 188 STGKLKFFKLMK---VAGAYWR 206


>gi|268596339|ref|ZP_06130506.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
 gi|268550127|gb|EEZ45146.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae FA19]
          Length = 638

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 46  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 104

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 105 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 162

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 163 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 207

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 208 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 250


>gi|258538953|ref|YP_003173452.1| phosphoesterase, DHHA1 [Lactobacillus rhamnosus Lc 705]
 gi|257150629|emb|CAR89601.1| Phosphoesterase, DHHA1 [Lactobacillus rhamnosus Lc 705]
          Length = 157

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 6/150 (4%)

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806
              NV  +V ++  + +  Q   A  + +L  +           +     +   +     
Sbjct: 5   QVKNVPSKVTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDHAETVGGFKLIDKQVQVAGM 64

Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866
            EL+ + D  + K  S I++L   +  K   ++            A DL +  A  +GGG
Sbjct: 65  NELRQLADEWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVGGG 124

Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           GG GRP MAQ+GG        A+A   + +
Sbjct: 125 GG-GRPDMAQAGGKKPAGIPAALAEAKNVI 153


>gi|329928815|ref|ZP_08282654.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328937458|gb|EGG33879.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 645

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 33/266 (12%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + D   +I  G+R     V  K +GI V  +   +     E   ++T D     +
Sbjct: 16  EAGSNIEDVAASISSGLRKN--AVAGKMDGIVVDLSTPLQDGALIE---IVTQDTPEGLE 70

Query: 583 LSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   HS  HLL  A   + G   V      +  DG  +D+   +P+   +L+ IE  +  
Sbjct: 71  VMR-HSTAHLLAQATKRLYGQKEVKLGVGPVIEDGFYYDMDLEEPLNPEDLQKIEKEMER 129

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCG 695
           II +NLP+V + ++R +A+       LG  Y   +     E      YE G      LC 
Sbjct: 130 IIGENLPIVRKEVSRAEALRIFG--ELGDPYKLELINALPEDSIITIYEQGEFFD--LCR 185

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV STG+I +  ++   ++     R               +++ L+ +     V +  
Sbjct: 186 GPHVPSTGKIKVFKLM---NVAGAYWR------------GDSKNKMLQRVYGTAFVKKAQ 230

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
           +   +  + EE +K       ++LQ+
Sbjct: 231 LDEHL-RLLEEAKKRDHRKLGKELQM 255


>gi|240127689|ref|ZP_04740350.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 648

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 260


>gi|226941673|ref|YP_002796747.1| threonyl-tRNA synthetase [Laribacter hongkongensis HLHK9]
 gi|254783525|sp|C1DDA6|SYT_LARHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226716600|gb|ACO75738.1| Syt [Laribacter hongkongensis HLHK9]
          Length = 633

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 86/215 (40%), Gaps = 22/215 (10%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++  ++ L +  D        + HS  HLL  A+  +        G  I  +G  
Sbjct: 45  VDTSFVIDHDVDLAIVTDKDADGLGILRHSTAHLLACAVKELFPEAQVTIGPEI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +P T  +L +IE  + ++  +++PV    + R++AIA   +  +G  Y   +  
Sbjct: 104 YDFSYKRPFTPEDLVAIEKKMAELAKKDIPVERYELPRDEAIAYFKS--IGEAYKAEIIE 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              + E   ++       LC G HV STG++ +  ++    +     R            
Sbjct: 162 SIPQGEVLSLYREGNFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR------------ 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
              ++E L+ +       + ++   +  + E  ++
Sbjct: 207 GDSKNEMLQRIYGTAWAKKEDLEAYLHMLEEAEKR 241


>gi|268681605|ref|ZP_06148467.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
 gi|268621889|gb|EEZ54289.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID332]
          Length = 637

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 249


>gi|59800743|ref|YP_207455.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
 gi|73919809|sp|Q5F9U4|SYT_NEIG1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|59717638|gb|AAW89043.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090]
          Length = 637

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 249


>gi|117923678|ref|YP_864295.1| threonyl-tRNA synthetase [Magnetococcus sp. MC-1]
 gi|259516564|sp|A0L4J6|SYT_MAGSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117607434|gb|ABK42889.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Magnetococcus
           sp. MC-1]
          Length = 648

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 17/207 (8%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G+     +     +     + +  +        I HSA+HL+  A+ T+        G  
Sbjct: 39  GVVNGQKVDLDAPVPHGAQVAIITEDSPEGLEIIRHSASHLMAQAVKTLFPQAQVTIGPA 98

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D  + +P T  +L +IE+ +  +  +N  V  R+M R++A+A   A  +G  
Sbjct: 99  I-ENGFYYDFDYERPFTPDDLTAIENCMRKLAKRNEKVERRVMPRDEAVAYFQA--MGEL 155

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSES-------SIRAGI 720
           Y   +       ED  ++S      LC G HV STG++    ++          S    +
Sbjct: 156 YKAEIIGAIPAGEDVSLYSQGEFTDLCRGPHVPSTGKLKAFKVMKAGGAYWRGDSRNKML 215

Query: 721 RRIE---AITGQRARSHLMGQDEKLKS 744
           +RI      T    +++L   +E  K 
Sbjct: 216 QRIYGTAWATEADLKAYLTQMEEAEKR 242


>gi|260441039|ref|ZP_05794855.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI2]
 gi|268600819|ref|ZP_06134986.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
 gi|268584950|gb|EEZ49626.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID18]
          Length = 637

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 249


>gi|121594741|ref|YP_986637.1| threonyl-tRNA synthetase [Acidovorax sp. JS42]
 gi|166223314|sp|A1W8I6|SYT_ACISJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120606821|gb|ABM42561.1| Ser-tRNA(Thr) hydrolase [Acidovorax sp. JS42]
          Length = 639

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFYYDFSYKRPFTPEDLAAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PVV R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPVVRRVLPRDEAVAYF--KGLGEHYKAEIIASIPTNEDVSLYREGGFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 188 STGKLKFFKLMK---VAGAYWR 206


>gi|325276812|ref|ZP_08142513.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
 gi|324098050|gb|EGB96195.1| threonyl-tRNA synthetase [Pseudomonas sp. TJI-51]
          Length = 640

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 87/221 (39%), Gaps = 20/221 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDLAAIEKRMMELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKVTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S       R +A   Q  R +     +K K LA++        + R+
Sbjct: 188 NTRFLKAFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADK-KQLAAY--------IQRI 235

Query: 761 EEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           EE  +  +RK+        LQ     +             +
Sbjct: 236 EEAEKRDHRKIGKQLDLFHLQEEAPGMVFWHANGWTVYQVL 276


>gi|319763197|ref|YP_004127134.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|330825391|ref|YP_004388694.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
 gi|317117758|gb|ADV00247.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans BC]
 gi|329310763|gb|AEB85178.1| threonyl-tRNA synthetase [Alicycliphilus denitrificans K601]
          Length = 639

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFYYDFAYKRPFTPEDLVAIEKRMMELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PVV R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPVVRRVLPRDEAVAYF--KGLGEHYKAEIIASIPSNEDVSLYREGGFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 188 STGKLKFFKLMK---VAGAYWR 206


>gi|269214426|ref|ZP_05986526.2| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
 gi|269209844|gb|EEZ76299.1| threonine--tRNA ligase [Neisseria lactamica ATCC 23970]
          Length = 643

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+     TE S V  I  ++R  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 51  VDACDPITEDSTVQIITPKDREGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 109

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R +A+        G +Y  R+  
Sbjct: 110 YDIATEKPFTPEDVAAIEARMKELIAQDYDVIKIMTPRAEAVKIFQDR--GEEYKLRLID 167

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 168 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 212

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   +  I E  ++      K+
Sbjct: 213 GDSNNEMLQRIYGTAWATKDELKAYIRRIEEAEKRDHRKLGKQ 255


>gi|262281009|ref|ZP_06058792.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257909|gb|EEY76644.1| threonyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score = 88.6 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   +P T  ++ ++E+ +  +I Q+  VV ++  R++ IA   A   G +Y  R+  
Sbjct: 104 YDIWMPRPFTLDDMAAVEERMKKLIDQDYDVVKKMTPRDEVIAEFTAR--GEEYKLRLIA 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E    G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEETQMGLYYHQDYLDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|311693962|gb|ADP96835.1| threonyl-tRNA synthetase [marine bacterium HP15]
          Length = 641

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQ--LSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     R E    L I  +   +    I HS  HL+  A+  +        G  I  +
Sbjct: 42  GQLVDTSYRIENDAELAIVTERDEEGVDVIRHSTAHLMAMAVQELFPGAQVTIGPVID-N 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D  + +P T+ +L  IE  + ++  Q+LPV   IM+R++AI       +G +Y  R
Sbjct: 101 GFYYDFKYDRPFTNEDLARIEKRMEELSKQDLPVSRSIMSRDEAIKLFED--MGEEYKVR 158

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +       ED   +S      LC G HV STG++    +     +     R
Sbjct: 159 IIQDIPGEEDLSFYSQGDFIDLCRGPHVPSTGKLKAFKLTK---VAGAYWR 206


>gi|268686074|ref|ZP_06152936.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626358|gb|EEZ58758.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035]
          Length = 637

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGIYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|293399557|ref|ZP_06643710.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
 gi|291610126|gb|EFF39248.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae F62]
          Length = 648

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIE 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|240016048|ref|ZP_04722588.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae FA6140]
          Length = 648

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|240013609|ref|ZP_04720522.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae DGI18]
 gi|240112403|ref|ZP_04726893.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|240120679|ref|ZP_04733641.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1]
          Length = 648

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIE 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|239998484|ref|ZP_04718408.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|240125235|ref|ZP_04738121.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|317163762|gb|ADV07303.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 648

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIE 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|309378779|emb|CBX22605.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 637

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+     TE S V  I  ++R  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPITEDSTVQIITPKDREGVEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R +A+        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVIKIMTPRAEAVKIFQDR--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   +  I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIRRIEEAEKRDHRKLGKQ 249


>gi|56475898|ref|YP_157487.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
 gi|73919766|sp|Q5P7X5|SYT_AZOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56311941|emb|CAI06586.1| threonyl-tRNA synthetase [Aromatoleum aromaticum EbN1]
          Length = 638

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D  + +P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAHAVKELFPEAQVTIGPVI-ENGFYYDFAYKRPFTPEDLEKIEKRMAELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           + +PV   +  R+ A+    +   G  Y   +     + ED  ++       LC G HV 
Sbjct: 130 REIPVSREVWPRDKAVEFFKSQ--GEHYKAEIIASIPQAEDVSLYRQGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++ +  +     +     R               ++E L+ +       + ++   +
Sbjct: 188 STGKLKVFKLTK---VAGAYWR------------GDSKNEMLQRIYGTAWAKKDDLENYL 232

Query: 761 EEIWEEYRK 769
             + E  ++
Sbjct: 233 HMLEEAEKR 241


>gi|313668802|ref|YP_004049086.1| threonyl-tRNA synthetase [Neisseria lactamica ST-640]
 gi|313006264|emb|CBN87726.1| putative threonyl-tRNA synthetase [Neisseria lactamica 020-06]
          Length = 637

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  + S+ +           I HS  HL+ HA+  +  +     G
Sbjct: 36  VAGKVNGKLVDACDPITEDSSVQIITPKDREGVEIIRHSCAHLVGHAVKQLYPNAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R +A+        G
Sbjct: 96  PVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIAQDYDVIKIMTPRAEAVKIFQDR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 153 EEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 199

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      ++  +   +  I E  ++      K+
Sbjct: 200 LAG--AYWRGDSNNEMLQRIYGTAWATKDELKAYIRRIEEAEKRDHRKLGKQ 249


>gi|317480009|ref|ZP_07939122.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316903808|gb|EFV25649.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 155

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M     ++  N+++    H+  H+++  +  + G   S + + I     + D   +   T
Sbjct: 1   MEQQPHLNDHNKQEYPPMHTTEHIINQTMIRLFGCGRSIS-AHIERKKSKLDYRLAACPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E+K +E+ VN++IA+ LP+ T  + +E+A        L    ++ VRVV V     G 
Sbjct: 60  EEEIKKLEEAVNEVIARQLPITTEFITQEEAQGRFDLERLPDGASETVRVVKV-----GD 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIR 721
           +   LC G HV +T EI    I+S    E + R  +R
Sbjct: 115 YDECLCIGVHVENTSEIGTFKIISHDWNEEAKRWRMR 151


>gi|170695920|ref|ZP_02887060.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
 gi|170139218|gb|EDT07406.1| threonyl-tRNA synthetase [Burkholderia graminis C4D1M]
          Length = 635

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  +S+P T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKDLYPEAQVTIGPVID-NGFYYDFAYSRPFTPEDLEKIEKRMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PV  R+++R +A+    +  +G KY   +       ++  ++S    + LC G HV 
Sbjct: 130 KDEPVSRRVVSRGEAVDYFKS--IGEKYKAEIIESIPATDEIKLYSHGGFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 188 STGKLKVFKLMK---VAGAYWR 206


>gi|240117427|ref|ZP_04731489.1| putative threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 648

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 260


>gi|198284332|ref|YP_002220653.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666034|ref|YP_002426993.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|259516307|sp|B7J7T0|SYT_ACIF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516338|sp|B5EN57|SYT_ACIF5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|198248853|gb|ACH84446.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518247|gb|ACK78833.1| threonyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 644

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+ ++        G  I  +G  +D    +  T  +L++IE  ++ ++ 
Sbjct: 71  IRHSTAHLLAQAVQSLYPEAQVTIGPVID-NGFYYDFAFPRGFTPEDLEAIEARMHALVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NLPV   +++REDAIA      +G  Y   +       E   ++       LC G HV 
Sbjct: 130 ENLPVQREMLSREDAIALFEK--MGEDYKVEIIRAIPRGEPLSLYRQGDFVDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    +     +     R
Sbjct: 188 STGVLGAFKL---QRVAGAYWR 206


>gi|261408878|ref|YP_003245119.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261285341|gb|ACX67312.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 645

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 108/266 (40%), Gaps = 33/266 (12%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + D   +I  G+R     V  K +GI V  +   +     E   ++T D     +
Sbjct: 16  EAGSNIEDVAASISSGLRKN--AVAGKMDGIVVDLSTPLQDGALIE---IVTQDTPEGLE 70

Query: 583 LSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   HS  HLL  A   + G   V      +  DG  +D+   +P+   +L+ IE  +  
Sbjct: 71  VMR-HSTAHLLAQATKRLYGQKEVKLGVGPVIEDGFYYDMDLEEPLNPEDLQKIEKEMER 129

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCG 695
           II +NLP+V + ++R DA+       LG  Y   +     E      YE G      LC 
Sbjct: 130 IIGENLPIVRKEVSRADALRIFG--ELGDPYKLELINALPEDSIITIYEQGEFFD--LCR 185

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV STG+I +  ++   ++     R               +++ L+ +     V +  
Sbjct: 186 GPHVPSTGKIKVFKLM---NVAGAYWR------------GDSKNKMLQRVYGTAFVKKAQ 230

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
           +   +  + EE +K       ++LQ+
Sbjct: 231 LDEHL-RLLEEAKKRDHRKLGKELQM 255


>gi|90021224|ref|YP_527051.1| threonyl-tRNA synthetase [Saccharophagus degradans 2-40]
 gi|123090560|sp|Q21KE0|SYT_SACD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89950824|gb|ABD80839.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Saccharophagus
           degradans 2-40]
          Length = 636

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  I  DG  +D  +S+  T  +L  IE+ + ++  
Sbjct: 71  IRHSTAHLLAQAVKQLFPEAQVTIGPVI-EDGFYYDFAYSRAFTPEDLVVIEEKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            +  V  R++ R++A A      +G +Y  ++       E+  ++       LC G HV 
Sbjct: 130 ADFDVTRRVLPRDEASAYF--RGIGEEYKAQIIDSIPANEELSLYKQGDFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++    +     R                +E L  +      S+ ++   V
Sbjct: 188 STGKLEYFKLMK---VAGAYWR------------GDSNNEMLTRVYGTAWASKKDLKAYV 232

Query: 761 EEIWEEYRKLQLIHAKR 777
             + E  ++      K+
Sbjct: 233 HRLEEAEKRDHRKLGKK 249


>gi|316983701|gb|EFV62682.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 648

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 260


>gi|291460058|ref|ZP_06599448.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417399|gb|EFE91118.1| threonine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 626

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 6/185 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H+L  A+  + G  V         DG  +D    +P+T    K IED + +II 
Sbjct: 10  YRHSLAHILAKAVIELYGKDVQYAIGPEVEDGCYYDFVFPRPVTEENFKEIEDKMREIIR 69

Query: 645 QNLPVVTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +  P   R ++R++A+              D      +     G     LC G HV ++ 
Sbjct: 70  RKEPWTRRELSRKEALELFKDQRFKKEIIEDLPEDAVISAYYTGDDFVDLCRGPHVENSK 129

Query: 704 EI--MLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           E+      I S S   A  R  E     QR   +     E LK+   F+K +Q     ++
Sbjct: 130 ELLNAAFQIKSTSG--AYWRGDEHRDQLQRIYLYAFPDKEALKAHLKFVKEAQERDHKKL 187

Query: 761 EEIWE 765
               E
Sbjct: 188 GAQLE 192


>gi|268683833|ref|ZP_06150695.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|268624117|gb|EEZ56517.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679]
          Length = 637

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIE 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 249


>gi|268594343|ref|ZP_06128510.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
 gi|268547732|gb|EEZ43150.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 35/02]
          Length = 638

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 46  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 104

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 105 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIE 162

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 163 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 207

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 208 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 250


>gi|254493203|ref|ZP_05106374.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268598466|ref|ZP_06132633.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
 gi|226512243|gb|EEH61588.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae 1291]
 gi|268582597|gb|EEZ47273.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae MS11]
          Length = 637

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIE 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 249


>gi|85858497|ref|YP_460699.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
 gi|85721588|gb|ABC76531.1| threonyl-tRNA synthetase [Syntrophus aciditrophicus SB]
          Length = 645

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 34/259 (13%)

Query: 568 EMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           +  ++  ID  +R  L  + HS +H++  A+  I    +   G  I  DG  +D  +   
Sbjct: 62  DDGVLEPIDIHSREGLEILRHSISHIMAQAVQDIFPGVLVSIGPAI-EDGFYYDFEYGNT 120

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVS 680
            T  EL+ IE  + +I+ ++ P V   ++RE+A+A       G  Y           + +
Sbjct: 121 FTPEELEKIEARMQEIVKEDHPFVREEVSREEAVAFFQGK--GESYKVELLNDLPGNIKT 178

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           V     G ++  LC G HV ST  I    ++   ++     R               +++
Sbjct: 179 VSLYRQGHYTD-LCRGPHVPSTSMIRAFKLL---NVAGAYWR------------GDERNK 222

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            L+ +      S+  +   + +I EE +K       RKL  +++     + A    +   
Sbjct: 223 MLQRIYGTGFASREELDEYL-KILEEAKK----RDHRKLGKDLDLFQVSEEAGAGLIIFH 277

Query: 801 ISEVDSKELKSVMDALQKK 819
                   L+++++  +KK
Sbjct: 278 PKGT---ILRTIIEDWEKK 293


>gi|34496803|ref|NP_901018.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
 gi|73919781|sp|Q7NYC6|SYT_CHRVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34102658|gb|AAQ59023.1| threonyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 633

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    ++     L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSYLIDRNADLAIVTDKDADGLSVIRHSTAHLLAYAVKELFPEAQVTIGPEI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L +IE  + ++  +++PV    + R++AIA   +  +G  Y   +  
Sbjct: 104 YDFAYKRPFTPEDLAAIEKKMAELAKKDIPVERYELPRDEAIAYFKS--IGEAYKAEIIE 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              + E   ++       LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPQGEVLSLYREGEFTDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|309782526|ref|ZP_07677250.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918863|gb|EFP64536.1| threonine--tRNA ligase [Ralstonia sp. 5_7_47FAA]
          Length = 580

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  +  L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSYTIDRDAKLAIITDKDADGVDVIRHSTAHLLAYAVKELYPDAQVTIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L +IE  + ++  ++  V   +++R+DA+       +G KY   +  
Sbjct: 104 YDFAYKRPFTPDDLVAIEKKMGELAKKDEKVTREVLSRDDAVKLFQG--MGEKYKAEIIA 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPEDQEIGLYREGNFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|307609405|emb|CBW98894.1| hypothetical protein LPW_06811 [Legionella pneumophila 130b]
          Length = 221

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 31/213 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E++ ++T  ++ +GGQ  D     G    L++   +   +G  +++ + +   L     +
Sbjct: 25  EILLEKTIAFSFSGGQESDRAFING----LEVLSSR--IDGNLIYYTLPDDHNLAPNDVI 78

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            +TID+  R +L   H A  L+   ++    S + + G+ IT    R D   +  I++  
Sbjct: 79  TMTIDWPRRYRLMRLHFAAELILELVTRT--SMLEKVGAHITESKARIDFKANFNISTI- 135

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              + D  N II Q+L +     +  +          G                      
Sbjct: 136 FSQLLDEYNAIIRQDLVIHKGYHDVTNQRRFWKIDGFGEV-------------------- 175

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTHV ST E+  +  +  S     I RIE
Sbjct: 176 -PCGGTHVHSTSEVGFIR-LKRSHPGKAIERIE 206


>gi|304387978|ref|ZP_07370150.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
 gi|304337977|gb|EFM04115.1| threonine--tRNA ligase [Neisseria meningitidis ATCC 13091]
          Length = 643

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 51  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 109

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 110 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 167

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 168 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 212

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 213 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 255


>gi|268603124|ref|ZP_06137291.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
 gi|268587255|gb|EEZ51931.1| threonyl-tRNA synthetase [Neisseria gonorrhoeae PID1]
          Length = 637

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKDYIQRIEEAEKRDHRKLGKQ 249


>gi|325136057|gb|EGC58667.1| threonyl-tRNA synthetase [Neisseria meningitidis M0579]
          Length = 643

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 51  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 109

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 110 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 167

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 168 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 212

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 213 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 255


>gi|257095791|ref|YP_003169432.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048315|gb|ACV37503.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 641

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  +  S     G  I  DG  +D    +P T  +L  IE  + ++ A
Sbjct: 71  LRHSCAHLLAMAVKQLYPSAQVTIGPVI-EDGFFYDFAFERPFTPDDLVEIEARMQELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            +LP+  R + R+ A+A      LG  Y   +     E E   +++      LC G HV 
Sbjct: 130 ADLPLGRRELPRDQAVAYFEQ--LGESYKAELIRAIPEGETLSLYAQGDFADLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEA 725
           STG +    +     +     R +A
Sbjct: 188 STGRLQAFKLTK---VAGAYWRGDA 209


>gi|187929057|ref|YP_001899544.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
 gi|238691850|sp|B2UGJ8|SYT_RALPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187725947|gb|ACD27112.1| threonyl-tRNA synthetase [Ralstonia pickettii 12J]
          Length = 635

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  +  L +  D        I HS  HLL +A+  +        G  I  +G  
Sbjct: 45  VDTSYTIDHDAKLAIITDKDADGVDVIRHSTAHLLAYAVKELYPDAQVTIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D  + +P T  +L +IE  + ++  ++  V   +++R+DA+       +G KY   +  
Sbjct: 104 YDFAYKRPFTPDDLVAIEKKMGELAKKDEKVTREVLSRDDAVKLFQG--MGEKYKAEIIA 161

Query: 679 VSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E ++ G++       LC G HV STG++ +  ++    +     R
Sbjct: 162 SIPEDQEIGLYREGNFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWR 206


>gi|297250596|ref|ZP_06864620.2| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
 gi|296838509|gb|EFH22447.1| threonine--tRNA ligase [Neisseria polysaccharea ATCC 43768]
          Length = 648

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 56  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 114

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R +AI        G +Y  R+  
Sbjct: 115 YDIATEKPFTPEDVAAIEARMKELIAQDYDVIKIMTPRAEAIKIFQER--GEEYKLRLID 172

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 173 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 217

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 218 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 260


>gi|226944147|ref|YP_002799220.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
 gi|259516344|sp|C1DF42|SYT_AZOVD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226719074|gb|ACO78245.1| threonyl-tRNA synthetase [Azotobacter vinelandii DJ]
          Length = 640

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 90/240 (37%), Gaps = 33/240 (13%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++      A  +  H A ++    + E  + +           I HS  HL+ HA+  + 
Sbjct: 39  KVDGKLVDACDLIDHDATLQIITPKDEEGVEI-----------IRHSCAHLVGHAVKQLY 87

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +     G  I  +G  +D+ + +P T  ++ +IE  + ++I ++  VV ++  RE  I 
Sbjct: 88  PTAKMVIGPVID-EGFYYDIAYERPFTPEDVAAIEQRMRELIDRDYDVVKKMTPREQVIE 146

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIR 717
              +   G  Y  R+     + +  G++       +C G HV +T  +    +   S   
Sbjct: 147 VFKSR--GEDYKLRLIDDMPDEKAMGLYYHEEYVDMCRGPHVPNTRFLKAFKLTKLSG-- 202

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                        A      ++E+L+ +       +  +   ++ I E  ++      KR
Sbjct: 203 -------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYIQRIEEAEKRDHRKLGKR 249


>gi|317403269|gb|EFV83787.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans C54]
          Length = 650

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ 
Sbjct: 75  MIRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMAELA 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++  V   + +R+DA+       +G KY   +       E   ++       LC G HV
Sbjct: 134 KKDEVVTREVWSRDDAVEFF--KGIGEKYKAEIIASIPSNEPLSLYREGEFIDLCRGPHV 191

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            STG++ +  ++    +     R
Sbjct: 192 PSTGKLKVFKLMK---VAGAYWR 211


>gi|160900048|ref|YP_001565630.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
 gi|238687213|sp|A9C3D4|SYT_DELAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160365632|gb|ABX37245.1| threonyl-tRNA synthetase [Delftia acidovorans SPH-1]
          Length = 643

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 75  IRHSTAHLLAYAVKDLFPDAQVTIGPVI-ENGFYYDFSYKRPFTPEDLVAIEKRMAELAA 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PVV R++ R++A+A      +G  Y   +       ED  ++       LC G HV 
Sbjct: 134 KDEPVVRRVLPRDEAVAYF--KGIGENYKAEIIASIPSNEDVSLYREGSFEDLCRGPHVP 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 192 STGKLKFFKLMK---VAGAYWR 210


>gi|319943475|ref|ZP_08017757.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
 gi|319743290|gb|EFV95695.1| threonine--tRNA ligase [Lautropia mirabilis ATCC 51599]
          Length = 636

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 10/166 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +  D        I HS  HL+ +A+  +        G  I  +G  +D  +
Sbjct: 50  TVSEDAEVAIVTDKDPEGLDIIRHSTAHLMAYAVQDLFPEAQVTIGPVI-ENGFYYDFAY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L +IE  ++++   +  VV    +R++A+    +  +G KY   +       
Sbjct: 109 KRPFTPEDLAAIEKRMHELAKLDETVVREEWDRQEAVKYFES--IGEKYKAEIIASIPAE 166

Query: 684 EDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           E    +       LC G HV STG++ +  ++    +     R +A
Sbjct: 167 EGITFYREGRFVDLCRGPHVPSTGKLKVFKLMK---VAGAYWRGDA 209


>gi|91787975|ref|YP_548927.1| threonyl-tRNA synthetase [Polaromonas sp. JS666]
 gi|123059945|sp|Q12BR3|SYT_POLSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91697200|gb|ABE44029.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Polaromonas sp.
           JS666]
          Length = 635

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVS 606
           K A G  V   +V+   L  + S +  I  ++   L +  HS  HLL +A+  +      
Sbjct: 33  KAALGGKVDGKVVDTSYLIEKDSALSIITAKDADGLELIRHSTAHLLAYAVKELFSEAQV 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D  + +P T  +L +IE  + ++ A++ PV  R++ R++A+A   + 
Sbjct: 93  TIGPVI-ENGFYYDFAYKRPFTPEDLAAIEKRMTELAAKDEPVTRRVLPRDEAVAHFKS- 150

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            +G  Y   +       ED  ++       LC G HV STG++    ++    +     R
Sbjct: 151 -IGEHYKAEIIASIPANEDVSLYREGTFEDLCRGPHVPSTGKLKFFKLMK---VAGAYWR 206


>gi|307634865|gb|ADI84351.2| threonyl-tRNA synthetase [Geobacter sulfurreducens KN400]
          Length = 645

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 101/273 (36%), Gaps = 35/273 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +  D        I HS +HL+  A+  +  +     G  +   G  +D   
Sbjct: 61  PLTDGARVEIITDKSADGLDIIRHSTSHLMAQAVKQLFPTAKVTIGPAVET-GFYYDFDV 119

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE- 682
             P +  +L  IE+ + ++   ++PV  ++++R++A+       +G +Y   +     E 
Sbjct: 120 ETPFSPEDLARIEERMRELAKADIPVERQVLSRDEAVKLF--RDMGEEYKVEIIEALPEE 177

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
               Y  G      LC G H+ ST       + S             + G  A      +
Sbjct: 178 SVSLYRQGDF--VDLCRGPHLPSTSFCRAFKLTS-------------LAG--AYWRGDEK 220

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           ++ L+ +       +  +   +E+I E  R+       RKL   ++  S        F+ 
Sbjct: 221 NKMLQRVYGTAFADKKELDAYLEKIEEAKRRDH-----RKLGRELDLFSFSDDVGAGFVI 275

Query: 799 HIISEVDSKELKSVMDAL--QKKIQSGIIMLVG 829
                     L+++++    ++ ++ G  ++VG
Sbjct: 276 WHPKGA---MLRTLLEDFERREHLKRGYDIVVG 305


>gi|261392911|emb|CAX50492.1| threonyl-tRNA synthetase (threonine--tRNA ligase; ThrRS) [Neisseria
           meningitidis 8013]
 gi|325203807|gb|ADY99260.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240355]
          Length = 637

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|15676618|ref|NP_273762.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|22654143|sp|Q9K095|SYT_NEIMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7225946|gb|AAF41133.1| threonyl-tRNA synthetase [Neisseria meningitidis MC58]
 gi|325140125|gb|EGC62654.1| threonyl-tRNA synthetase [Neisseria meningitidis CU385]
 gi|325200596|gb|ADY96051.1| threonyl-tRNA synthetase [Neisseria meningitidis H44/76]
          Length = 637

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|300311232|ref|YP_003775324.1| threonyl/alanyl tRNA synthetase SAD protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074017|gb|ADJ63416.1| threonyl/alanyl tRNA synthetase SAD protein [Herbaspirillum
           seropedicae SmR1]
          Length = 213

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 40/216 (18%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              +  +    TPF+ + GGQ  DTG        +++  V  +++G+  +        + 
Sbjct: 25  EDGRYAIRLSATPFHPQGGGQPSDTGWI----AEVEVLRVLSESDGVVHY----TTAPVA 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR-FDVTHSK 625
              ++ L +D Q R+  +  HSA H++   ++ +     +   +   P   R   V    
Sbjct: 77  PGPAVAL-VDAQPRQLHARLHSAGHVIGQVMTELG---WTPTKAHHWPGEARVVGVAAPT 132

Query: 626 PITSAEL--KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              + EL    +E   N ++AQ+LP    +M    A+  G                 + +
Sbjct: 133 EAAAQELAPAELERRCNALLAQDLP---CVM----AMQDGLR--------------QIGF 171

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            D   +    CGGTHV++ GEI  + I S   I+ G
Sbjct: 172 GDLPAY---PCGGTHVAALGEIGQIRIQSV-RIKKG 203


>gi|83647272|ref|YP_435707.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
 gi|123753567|sp|Q2SDJ2|SYT_HAHCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83635315|gb|ABC31282.1| threonyl-tRNA synthetase [Hahella chejuensis KCTC 2396]
          Length = 637

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HLL  A+ +I  S     G  I  DG  +D    +P T  +L  IE+ + ++  
Sbjct: 71  IRHSSAHLLAMAVQSIFPSAQVTIGPVI-EDGFYYDFAFERPFTPDDLVKIEEKMQELSD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            +LPV   +M+R +A+       +G +Y   +       E+   +S      LC G HV 
Sbjct: 130 ADLPVTRSLMSRSEAVELF--KKMGEEYKVEIIASIPTEENLSFYSQGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I    +     +     R
Sbjct: 188 STGKIKAFKLTK---VAGAYWR 206


>gi|308388909|gb|ADO31229.1| putative threonyl-tRNA synthetase [Neisseria meningitidis alpha710]
 gi|325202484|gb|ADY97938.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240149]
 gi|325207764|gb|ADZ03216.1| threonyl-tRNA synthetase [Neisseria meningitidis NZ-05/33]
          Length = 637

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|290953863|ref|ZP_06558484.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295312766|ref|ZP_06803503.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica
          URFT1]
          Length = 61

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 1  MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59
          M     +R  F+ +F+   H   PSSSLIP  D TL+FTN+GMV FK++F G EK +++
Sbjct: 1  MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKRIFR 59


>gi|330811023|ref|YP_004355485.1| hypothetical protein PSEBR_a4080 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379131|gb|AEA70481.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 208

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 36/224 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +    E+++ +    +  VV   T F+ + GGQ  DTG   G+   L++     +     
Sbjct: 12  LKANVEVLDCSPRDHEFAVVLHATLFHPQGGGQPCDTGWI-GESQVLRVV----QEGPQI 66

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           VH+       +    +  +++D Q R+  +  HSA HL+ H  +   G   +   +   P
Sbjct: 67  VHYV---DRPVALG-TAAISVDAQRRQLNARLHSAGHLIGH-FAETRG--WTPIKAHHWP 119

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              R            ++  I+  +++ IA +LP +  +                     
Sbjct: 120 GESRVQFQPGGNPQELDISIIQQGIDEWIANDLPRLITL--------------------- 158

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           R  +  V + +   +    CGGTHV    ++  + I S S  + 
Sbjct: 159 REGLREVGFGELAAYG---CGGTHVQRLQDLGTVTIASLSQKKG 199


>gi|323702723|ref|ZP_08114384.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532386|gb|EGB22264.1| threonyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 14/177 (7%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           G      +     ++ + +L L    D + R      HS  H+L  A+  +        G
Sbjct: 38  GKVNGRTVDLSYPIKEDATLELLTFNDEEGR--HVYRHSTAHVLAQAVKRLFPDTKLAIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D    +P T AEL+ IE  +N II ++LP     ++RE+A+     A  G
Sbjct: 96  PAIQ-DGFYYDFDVDRPFTPAELEQIEAEMNKIIKEDLPFERVEISREEALERFGKA--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             Y   +     E      +       LC G HV S      L  +   +I     R
Sbjct: 153 EIYKVELINDLPEDAVISCYKQGDFTDLCAGPHVPS---TGRLKSIKLMNIAGAYWR 206


>gi|28871838|ref|NP_794457.1| alanyl tRNA synthetase-like protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|237798485|ref|ZP_04586946.1| alanyl tRNA synthetase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|28855091|gb|AAO58152.1| alanyl tRNA synthetase-related protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331021336|gb|EGI01393.1| alanyl tRNA synthetase-like protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 212

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 30/216 (13%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
              +VV   T F+AE+GGQ  D GC      R+++T      E I    A  E       
Sbjct: 22  DGRDVVISPTIFFAESGGQESDKGCIN----RIEVTQATVVDERIIYRLA--EDPDFAVS 75

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + + ID+  R  L   H A  ++           + + G+ I     R D +    ++
Sbjct: 76  DLVSVEIDWPRRYALMRLHFAAEIVLEFFYKKFPD-LEKIGAHIGQHKARIDFSLEGNVS 134

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
                 I   V  ++A  LP+ +R  + +                               
Sbjct: 135 QY-FPEILQGVEHLVAAGLPIESRFTDTKCLRRCWYIKGFSEV----------------- 176

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                CGGTH+ +TGE+  +  +  ++I A   R+E
Sbjct: 177 ----PCGGTHLRTTGEVGRIR-LKRNNIGAHKERVE 207


>gi|148548433|ref|YP_001268535.1| threonyl-tRNA synthetase [Pseudomonas putida F1]
 gi|166225483|sp|A5W5E1|SYT_PSEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148512491|gb|ABQ79351.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           putida F1]
          Length = 640

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 20/221 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEKRMMELIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKMTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S       R +A   Q  R +     +K K LA++        + R+
Sbjct: 188 NTRFLKAFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADK-KQLAAY--------IQRI 235

Query: 761 EEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           EE  +  +RK+        LQ     +             +
Sbjct: 236 EEAEKRDHRKIGKQLDLFHLQEEAPGMVFWHANGWTVYQVL 276


>gi|82701621|ref|YP_411187.1| threonyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196]
 gi|123727233|sp|Q2YBS6|SYT_NITMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82409686|gb|ABB73795.1| Ser-tRNA(Thr) hydrolase [Nitrosospira multiformis ATCC 25196]
          Length = 638

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HLL HA+  +        G  I  DG  +D ++ +P T  +L +IE  + +I  
Sbjct: 71  IRHSSAHLLAHAVKELFPEAQVTIGPVI-EDGFYYDFSYKRPFTPEDLAAIEKRMAEIST 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL V  ++ +R +AI        G  Y  ++       ED  ++S      LC G HV 
Sbjct: 130 RNLKVERQVWDRSEAINFF--KNQGEHYKAQIIEAIPGDEDVSLYSQGNFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESS 715
           +T  + +  ++  + 
Sbjct: 188 ATSRLKVFKLMKLAG 202


>gi|319410089|emb|CBY90425.1| threonyl-tRNA synthetase (threonine-tRNA ligase; ThrRS) [Neisseria
           meningitidis WUE 2594]
          Length = 637

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|167034477|ref|YP_001669708.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
 gi|189083619|sp|B0KKR8|SYT_PSEPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166860965|gb|ABY99372.1| threonyl-tRNA synthetase [Pseudomonas putida GB-1]
          Length = 640

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 20/221 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEKRMMELIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKMTPRAEVIDVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S       R +A   Q  R +     +K K LA++        + R+
Sbjct: 188 NTRFLKAFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADK-KQLAAY--------IQRI 235

Query: 761 EEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           EE  +  +RK+        LQ     +             +
Sbjct: 236 EEAEKRDHRKIGKQLDLFHLQEEAPGMVFWHANGWTVYQVL 276


>gi|218767842|ref|YP_002342354.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
 gi|22654142|sp|Q9JVA3|SYT_NEIMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121051850|emb|CAM08156.1| putative threonyl-tRNA synthetase [Neisseria meningitidis Z2491]
          Length = 637

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|26989188|ref|NP_744613.1| threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|38258320|sp|Q88K27|SYT_PSEPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24984027|gb|AAN68077.1|AE016439_12 threonyl-tRNA synthetase [Pseudomonas putida KT2440]
 gi|313499446|gb|ADR60812.1| ThrS [Pseudomonas putida BIRD-1]
          Length = 640

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 20/221 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEKRMMELIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  VV ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVVKKMTPRAEVIDVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S       R +A   Q  R +     +K K LA++        + R+
Sbjct: 188 NTRFLKAFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADK-KQLAAY--------IQRI 235

Query: 761 EEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           EE  +  +RK+        LQ     +             +
Sbjct: 236 EEAEKRDHRKIGKQLDLFHLQEEAPGMVFWHANGWTVYQVL 276


>gi|13924631|gb|AAK49080.1|AF258288_1 alanyl-tRNA synthetase [Brassica napus]
          Length = 107

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 46/82 (56%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI    I+SE  I +GIRRIEA+ G+    ++  +D ++KSL S LKV   +V  RV+
Sbjct: 1   TAEIRSFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKSLCSILKVKAEDVTNRVD 60

Query: 762 EIWEEYRKLQLIHAKRKLQLNV 783
            + EE R  +   +  + +  V
Sbjct: 61  NLLEELRTARKEASDLRSKAAV 82


>gi|39996615|ref|NP_952566.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
 gi|73919793|sp|Q74D04|SYT_GEOSL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39983496|gb|AAR34889.1| threonyl-tRNA synthetase [Geobacter sulfurreducens PCA]
          Length = 636

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 101/273 (36%), Gaps = 35/273 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +  D        I HS +HL+  A+  +  +     G  +   G  +D   
Sbjct: 52  PLTDGARVEIITDKSADGLDIIRHSTSHLMAQAVKQLFPTAKVTIGPAVET-GFYYDFDV 110

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE- 682
             P +  +L  IE+ + ++   ++PV  ++++R++A+       +G +Y   +     E 
Sbjct: 111 ETPFSPEDLARIEERMRELAKADIPVERQVLSRDEAVKLF--RDMGEEYKVEIIEALPEE 168

Query: 683 ----YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
               Y  G      LC G H+ ST       + S             + G  A      +
Sbjct: 169 SVSLYRQGDF--VDLCRGPHLPSTSFCRAFKLTS-------------LAG--AYWRGDEK 211

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
           ++ L+ +       +  +   +E+I E  R+       RKL   ++  S        F+ 
Sbjct: 212 NKMLQRVYGTAFADKKELDAYLEKIEEAKRRDH-----RKLGRELDLFSFSDDVGAGFVI 266

Query: 799 HIISEVDSKELKSVMDAL--QKKIQSGIIMLVG 829
                     L+++++    ++ ++ G  ++VG
Sbjct: 267 WHPKGA---MLRTLLEDFERREHLKRGYDIVVG 296


>gi|70729481|ref|YP_259219.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68343780|gb|AAY91386.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 640

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPEDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFKAR--GEDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|325197939|gb|ADY93395.1| threonyl-tRNA synthetase [Neisseria meningitidis G2136]
          Length = 637

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|260219598|emb|CBA26443.1| Threonyl-tRNA synthetase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 665

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I   G  +D ++ +P T  +L +IE  + ++  
Sbjct: 100 IRHSTAHLLAYAVKELFPDAQVTIGPVI-EHGFFYDFSYKRPFTPEDLAAIEKKMTELAN 158

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PVV R++ R+DA+    +  LG +Y   +       ED  ++       LC G HV 
Sbjct: 159 KDEPVVRRVLPRDDAVEYFKS--LGEQYKAEIIASIPANEDVSLYREGNFEDLCRGPHVP 216

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 217 STGKLKHFKLMK---VAGAYWR 235


>gi|54293592|ref|YP_126007.1| hypothetical protein lpl0644 [Legionella pneumophila str. Lens]
 gi|53753424|emb|CAH14877.1| hypothetical protein lpl0644 [Legionella pneumophila str. Lens]
          Length = 221

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 31/213 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E++ ++T  ++ +GGQ  D     G    L++   +   +G  +++ + +   L     +
Sbjct: 25  EILLEKTIAFSFSGGQESDRSFING----LEVLSSR--IDGNLIYYTLPDDHNLAPNDVI 78

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            +TID+  R +L   H A  L+   ++    S + + G+ IT    R D   +  I++  
Sbjct: 79  TMTIDWPRRYRLMRLHFAAELILELVTRT--SMLEKVGAHITESKARIDFKANFNISTI- 135

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              + D  N II Q+L +                      Y+D          DG   + 
Sbjct: 136 FSQLLDEYNAIIRQDLVIHKG-------------------YHDVTNQRRFWKIDG--FAE 174

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTHV ST E+  +  +  S     I RIE
Sbjct: 175 VPCGGTHVHSTSEVGFIR-LKRSHPGKAIERIE 206


>gi|218679049|ref|ZP_03526946.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 79

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/77 (59%), Positives = 62/77 (80%)

Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           I SGI+ L+G+S++ KAS ++ VT DL+DRF+AVDL R+++  LGG GGGGRP MAQ+GG
Sbjct: 1   IGSGIVTLIGVSEDGKASAVVAVTPDLVDRFSAVDLVRIASAALGGKGGGGRPDMAQAGG 60

Query: 880 PNGNKADQAIAGVASFL 896
           P+G+KAD+AI  VA  L
Sbjct: 61  PDGSKADEAIEAVALAL 77


>gi|315648987|ref|ZP_07902081.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315275668|gb|EFU39022.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 645

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 33/266 (12%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + D   +I  G+R     V  K +GI V  +   +     E   ++T D     +
Sbjct: 16  EAGSSIEDVAASISSGLRKN--AVAGKLDGIVVDLSTPLQDGALIE---IVTQDTPEGLE 70

Query: 583 LSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   HS  HLL  A   + G   V      +  DG  +D+   +P+   +L+ IE  +  
Sbjct: 71  VMR-HSTAHLLAQATKRLYGAKEVKLGVGPVIEDGFYYDMDLEEPLNPEDLQKIEKEMER 129

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCG 695
           II +NLP+V + ++R +A+       LG  Y   +     E      YE G      LC 
Sbjct: 130 IIGENLPIVRKEVSRAEALRVFG--ELGDPYKLELINALPEDSVITIYEQGEFFD--LCR 185

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV STG+I +  ++   ++     R               +++ L+ +     V +  
Sbjct: 186 GPHVPSTGKIKVFKLM---NVAGAYWR------------GDSKNKMLQRVYGTAFVKKAQ 230

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
           +   +  + EE +K       ++LQ+
Sbjct: 231 LDEHL-HLLEEAKKRDHRKLGKELQM 255


>gi|93007241|ref|YP_581678.1| threonyl-tRNA synthetase [Psychrobacter cryohalolentis K5]
 gi|123264359|sp|Q1Q809|SYT_PSYCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|92394919|gb|ABE76194.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Psychrobacter
           cryohalolentis K5]
          Length = 644

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 33/240 (13%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++      A     H A VE    + +  + +           I HS  HLL HA+  + 
Sbjct: 39  RVDGQLVDAHDPIAHDAKVEIVTPKDDDGVDI-----------IRHSCAHLLGHAVKQLY 87

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                  G  I  DG  +D+    P T   + +IE  + ++I Q+  V+ +I  R + I 
Sbjct: 88  PDVKMVIGPVID-DGFYYDIYSETPFTPEHMAAIEKRMMELIKQDYDVIKKITPRAEVIR 146

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIR 717
                  G +Y  ++       E  G++       +C G HV +T  + +  +   S   
Sbjct: 147 IFEER--GEEYKLKLINDMPGEEAFGLYHHQEYVDMCRGPHVPNTRFLKVFKLTKMSG-- 202

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                        A      ++E+L+ +       + ++   ++ I E  ++      K 
Sbjct: 203 -------------AYWRGDAKNEQLQRIYGTAWADKKDLKAYIQRIEEAEKRDHRKIGKA 249


>gi|254498486|ref|ZP_05111214.1| alanyl tRNA synthetase [Legionella drancourtii LLAP12]
 gi|254352302|gb|EET11109.1| alanyl tRNA synthetase [Legionella drancourtii LLAP12]
          Length = 230

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 31/220 (14%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
            VS     V+F++T  ++ +GGQ  D     G      + D   K E   +++ + +   
Sbjct: 18  VVSVDNNYVLFEETIVFSFSGGQESDHAYVNG----FPVID--SKIEDNLIYYVLQDEHN 71

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+    + + ID+  R +L   H A  L+   ++  L   + + G+ I     R D    
Sbjct: 72  LKPGDVVTMKIDWPRRYRLMRLHFAAELILELVTQEL--KLEKIGAHIAEFKARIDFFCD 129

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           K I+      + D  + II Q+L + T   + ++                + R   +E  
Sbjct: 130 KNISFLFESMLSD-YHKIIQQDLKIKTGFSDLQN----------------QRRFWEIEG- 171

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                S   CGGTHV ST E+     +   +I  G  RIE
Sbjct: 172 ----FSKVACGGTHVKSTSEVG-FITLKRVNIGGGKERIE 206


>gi|319778289|ref|YP_004129202.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
 gi|317108313|gb|ADU91059.1| Threonyl-tRNA synthetase [Taylorella equigenitalis MCE9]
          Length = 646

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D ++ +P T  +L+ IE  +++++ 
Sbjct: 76  IRHSTAHLLAHAVKELFPDAQVTIGPVIN-NGFYYDFSYKRPFTPEDLQKIEKRMSELVK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           Q++ V+    +R++AI        G  Y   +     + E   ++       LC G HV 
Sbjct: 135 QDIAVIREEWDRDEAIEFF--KKEGELYKAEIISSIPQGEVISLYRQGSFVDLCRGPHVP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 193 STGKLKVFKLMK---VAGAYWR 211


>gi|123442717|ref|YP_001006694.1| hypothetical protein YE2487 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089678|emb|CAL12530.1| hypothetical protein YE2487 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 208

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 37/226 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +    +++  A  G++  V+   T F+ + GGQ  DTG   GD   L++   Q++   I 
Sbjct: 12  LTMDVDVLSCAPDGEEFAVILLATIFHPQGGGQPSDTGYI-GDNQVLRVVQQQEQL--IH 68

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                +  G      +    +D + R   +  HSA HL+ +      G       +   P
Sbjct: 69  YLAKSIAPG------TYYARVDNERRLLNTRMHSAGHLIGNIG---EGYGWQPVKAHHWP 119

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              R     ++     ++  I+  +   I Q+LP    + +                   
Sbjct: 120 GEGRVSFKRTQNPQVLDIDIIQAALEQFIRQDLPRQISVQD------------------- 160

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                 V + +   +    CGGTHV S  E+  + ++S S  + G+
Sbjct: 161 --NFREVGFGELSAY---ACGGTHVGSLHELGKVTVLSISE-KKGV 200


>gi|254515029|ref|ZP_05127090.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
 gi|219677272|gb|EED33637.1| threonyl-tRNA synthetase [gamma proteobacterium NOR5-3]
          Length = 645

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 9/167 (5%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQ--LSINHSATHLLHHALSTILGSHVSQNGSCI 612
           V            +    L I  +        I HS  HLL  A+  +        G  I
Sbjct: 39  VVDGREVDTSFSIDADAQLAIITERDDAGVELIRHSTAHLLAMAVQDLFPGTQVTIGPVI 98

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             DG  +D       T  +L  IE+ +  I+A ++PV   +M+R++A A  A   +G  Y
Sbjct: 99  D-DGFYYDFAGEHQFTPDDLPKIEERMAQIVADDVPVERIVMDRDEAAA--AFEKMGESY 155

Query: 673 NDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              +     E E+  ++       LC G HV STG++    +   + 
Sbjct: 156 KVEIIRDLPEGEEISLYKQGAWMDLCRGPHVPSTGKLGAFKLTKLAG 202


>gi|89900130|ref|YP_522601.1| threonyl-tRNA synthetase [Rhodoferax ferrireducens T118]
 gi|89344867|gb|ABD69070.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodoferax
           ferrireducens T118]
          Length = 669

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 22/222 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +    ++    ++ +           I HS  HLL +A+  +        G  
Sbjct: 66  GKVDGKVVDTSYLIEANSAVAIVTAKDAEGLEVIRHSTAHLLAYAVKELFPDAQVTIGPV 125

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D ++ +P T  +L +IE  +  + A++ PV  R++ R++A+A      LG  
Sbjct: 126 I-ENGFFYDFSYKRPFTPEDLLAIEQKMAALAAKDEPVTRRVLPRDEAVAYF--KGLGEN 182

Query: 672 YNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +       ED  ++       LC G HV STG++    ++              + 
Sbjct: 183 YKAEIIASIPAGEDVSLYREGKFEDLCRGPHVPSTGKLKFFKLMK-------------LA 229

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           G  A      ++E L+ +      ++  +   +  + E  ++
Sbjct: 230 G--AYWRGDHRNEMLQRIYGTAWATKDELQQHLTMLEEAEKR 269


>gi|149926877|ref|ZP_01915136.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
 gi|149824429|gb|EDM83647.1| threonyl-tRNA synthetase [Limnobacter sp. MED105]
          Length = 635

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +     +  + SL +  +        I HS  HLL +A+  +  +     G  
Sbjct: 38  GTVNGTLVDTSYTIDNDSSLSIVTEKDEEGLDMIRHSTAHLLAYAVKELFPTAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  DG  +D ++ +P T  +L++IE  + ++   +  V      R+DA+        G  
Sbjct: 98  I-EDGFYYDFSYERPFTPEDLEAIEKKMAELAKLDEVVTREEWVRDDAVQFFKDQ--GEH 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +       E+  ++       LC G HV +TG++    ++    +     R     
Sbjct: 155 YKAEIIASIPSNENISLYREGKFIDLCRGPHVPNTGKLKHFKLMK---VAGAYWR----- 206

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                      +E L+ +       + ++   +  + E  ++      K+
Sbjct: 207 -------GNSNNEMLQRIYGTAWTKKEDLAAYLHRLEEAEKRDHRKLGKQ 249


>gi|317121664|ref|YP_004101667.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591644|gb|ADU50940.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 644

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 22/225 (9%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           + +   IV E   G K EV    TP   E   Q+G       D +  +         G  
Sbjct: 2   LDEPARIVVELPDGSKREVPRGITPL--EVAQQIG--PRLARDAVAAR-------WNGQI 50

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           V          R E+      D   R      HS  HL+  A+  +        G  +  
Sbjct: 51  VDLNRPLEEDGRLEILTFA--DEAGRE--VYRHSTAHLMAQAVKRLWPEAQLAVGPPL-E 105

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           DG  +D+   +P+++ +L++IE  +  I+A++LP+  R ++R++A+    A   G +Y  
Sbjct: 106 DGFFYDIETPRPLSTDDLEAIEKEMARIVAEDLPIRRRPVSRQEALDLFRAR--GERYKI 163

Query: 675 RVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
            +     E E   V+       LC G H+ STG I    +   + 
Sbjct: 164 EIIEAIPEDEPLTVYEQGEFVDLCRGPHLPSTGRIKAFKLTGVAG 208


>gi|330810593|ref|YP_004355055.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378701|gb|AEA70051.1| Threonine--tRNA ligase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 640

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  S     G  I  +G  +D+   +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPSAKMVIGPVID-EGFYYDIAFERPFTPEDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|312961943|ref|ZP_07776440.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
 gi|311283753|gb|EFQ62337.1| Threonyl-tRNA synthetase [Pseudomonas fluorescens WH6]
          Length = 640

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 78/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  ++ +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPDDLAAIEQRMHALIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|13924625|gb|AAK49078.1|AF258286_1 alanyl-tRNA synthetase [Brassica oleracea]
          Length = 100

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV+  +V  RV+ +
Sbjct: 2   EIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVNAEDVTNRVDNL 61

Query: 764 WEEYRKLQLIHAKRKLQLNV 783
            EE R  +   +  + +  V
Sbjct: 62  LEELRTARKEASDLRSKAAV 81


>gi|256822932|ref|YP_003146895.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
 gi|256796471|gb|ACV27127.1| threonyl-tRNA synthetase [Kangiella koreensis DSM 16069]
          Length = 639

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    ++  + +L +  +        I HS  HLL  A+  +  +     G  
Sbjct: 38  GKVDGHMVDTSFVIENDAALAIITERDEDGLEVIRHSTAHLLAQAVQRLFDNVQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D    KP +  +L++IE  +  I  +NL V    M R++A+A      +G +
Sbjct: 98  ID-NGFYYDFATEKPFSEDDLRAIEKEMEKITKENLQVERTEMGRDEAVAFF--RNMGEE 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E   ++       LC G HV ST ++    ++    +     R     
Sbjct: 155 YKAEIIESIPQNETLSLYRQGDFIDLCRGPHVPSTSKLKAFKLMK---VAGAYWR----- 206

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                      +  L+ +      ++ ++   +  + E  ++     AK 
Sbjct: 207 -------GDSNNAMLQRIYGTAWTNKKDLKAYLHRLEEAEKRDHRKIAKA 249


>gi|237653686|ref|YP_002890000.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
 gi|237624933|gb|ACR01623.1| threonyl-tRNA synthetase [Thauera sp. MZ1T]
          Length = 638

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 7/155 (4%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
              +  L +  D        I HS  HLL HA+  +        G  I  +G  +D ++ 
Sbjct: 51  FEADADLAIVTDKNAEGLEIIRHSTAHLLAHAVKELFPDAQVTIGPVID-NGFYYDFSYK 109

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +P T  +L++IE  + +I  + +PV   +  R+ A+       +G  Y   +       E
Sbjct: 110 RPFTPEDLQAIEQRMAEIAKREIPVHREVWPRDKAVDFF--KGIGEHYKAEIIASIPAGE 167

Query: 685 DGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
           D  ++       LC G HV STG++ +  ++  + 
Sbjct: 168 DVSLYRQGDFIDLCRGPHVPSTGKLKVFKLMKLAG 202


>gi|329960573|ref|ZP_08298940.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328532637|gb|EGF59427.1| threonine/alanine tRNA ligase second additional domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 155

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           ++  H+  H+++  +        S + + I     + D   +   T  E+K +E+ VN +
Sbjct: 15  IAPMHTTEHIINQTMIRQFNCGRSIS-AHIERKKSKLDYLLAACPTEKEVKQLEETVNAV 73

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           IAQ+LPV T  + +E+A        L    ++ VR+V V     G +   LC GTHV++T
Sbjct: 74  IAQHLPVTTEFITQEEAKGRFDLERLPEDASETVRIVKV-----GEYDECLCIGTHVANT 128

Query: 703 GEIMLLYIVS----ESSIRAGIR 721
            EI +  I+S    E + R  +R
Sbjct: 129 SEIGIFKIISHDWDEENKRWRMR 151


>gi|325133766|gb|EGC56422.1| threonyl-tRNA synthetase [Neisseria meningitidis M13399]
 gi|325144077|gb|EGC66385.1| threonyl-tRNA synthetase [Neisseria meningitidis M01-240013]
 gi|325206438|gb|ADZ01891.1| threonyl-tRNA synthetase [Neisseria meningitidis M04-240196]
          Length = 637

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSIN-HSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIICHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|319901999|ref|YP_004161727.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides helcogenes P
           36-108]
 gi|319417030|gb|ADV44141.1| Threonyl/alanyl tRNA synthetase SAD [Bacteroides helcogenes P
           36-108]
          Length = 155

 Score = 87.1 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           M   + ++  N+++    H+  H+++  +  + G   S + + I     + D       T
Sbjct: 1   MEQAIQLNEHNKQEYPPMHTTEHIINQTMIRLFGCGRSVS-AHIERKKSKLDYCLRACPT 59

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             E++ +E+ VN II Q+LPV T ++ +++A        L    ++ VR+V V     G 
Sbjct: 60  EEEVRKLEEAVNAIIQQHLPVTTELITQKEAKDYFDLTRLPKDASEAVRIVKV-----GE 114

Query: 689 HSSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIRRIEAI 726
           +   LC G HVS+T EI    I+S    E + R    RI   
Sbjct: 115 YDKCLCLGAHVSNTSEIGYFQIISHDWDEETKR---WRIRFK 153


>gi|326571308|gb|EGE21325.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC8]
          Length = 639

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  + ++I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLDDMAKIEARMTELINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|50086067|ref|YP_047577.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
 gi|73919764|sp|Q6F860|SYT_ACIAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49532043|emb|CAG69755.1| threonyl-tRNA synthetase [Acinetobacter sp. ADP1]
          Length = 640

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   KP T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPDVQMVIGPVI-EEGFYYDIFSPKPFTLDDMAAIEARMKQLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  RE  I        G  Y  R+     E    G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPREQVIQEFTTR--GETYKLRLIDDMPEETQMGLYYHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +T  +    +     I     R +A   Q  R +     +K K LA+++K
Sbjct: 188 NTKFLKNFKLTK---ISGAYWRGDAKNEQLQRIYGTAWSDK-KELAAYIK 233


>gi|326570601|gb|EGE20637.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC7]
          Length = 639

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  + ++I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLDDMAKIEARMTELINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|296113663|ref|YP_003627601.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
 gi|295921357|gb|ADG61708.1| threonyl-tRNA synthetase [Moraxella catarrhalis RH4]
          Length = 639

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  + ++I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLDDMAKIEARMTELINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|268591418|ref|ZP_06125639.1| alanyl-tRNA synthetase-related protein [Providencia rettgeri DSM
           1131]
 gi|291313070|gb|EFE53523.1| alanyl-tRNA synthetase-related protein [Providencia rettgeri DSM
           1131]
          Length = 220

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 85/240 (35%), Gaps = 38/240 (15%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556
            +  ++ +    +   +      F+ + GGQ  DT       +R+     +K++ G+ V 
Sbjct: 15  VETSLLVQGHDDEGHWIALKDNIFHPQGGGQPMDTAWVNDIPVRI-----KKQSGGLIVG 69

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           + I E      E ++V  +D + R++ +  H+A HLL+  L                PD 
Sbjct: 70  Y-IPEGVTFSQENNVVARVDKEKRQRYAALHTAGHLLNWELRR---FGWLAQKGHHFPDE 125

Query: 617 LRFDVTHSK----PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            R + +  +    P    + + IED VN  I     V                     K 
Sbjct: 126 SRVEFSMMEGDVTPFDELDSQYIEDIVNQSIRSGRSVAI-------------------KQ 166

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
            D +R+  ++  +        CGGTHVSS   I    I S    + G  RI         
Sbjct: 167 KDDLRISYIDQTE-----EMPCGGTHVSSLDNIQHFSIKSM-KFKKGTLRISYDAQHAVI 220


>gi|120611523|ref|YP_971201.1| threonyl-tRNA synthetase [Acidovorax citrulli AAC00-1]
 gi|166223312|sp|A1TR39|SYT_ACIAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120589987|gb|ABM33427.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidovorax
           citrulli AAC00-1]
          Length = 639

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 18/234 (7%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           YA     + D   +IG G+       +    G      +    ++  +  L +   +   
Sbjct: 14  YA-GPVSVADVAQSIGPGLA------KMTVAGKVDGRLVDASDVIDHDARLQIITPWDQE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  + 
Sbjct: 67  GVEIIRHSCAHLVGHAVKQLYPTAKMVIGPVI-EEGFYYDIAYERPFTPEDLAAIEQRMK 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGG 696
           ++IAQ+  VV ++  R++ I        G +Y  R+     + +  G++       +C G
Sbjct: 126 ELIAQDYDVVKKMTPRDEVIQVFRER--GEEYKLRLVEDMPDEKAMGLYYHQEYVDMCRG 183

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            HV +T  + +  +     +     R +A   Q  R +     +K K L +++K
Sbjct: 184 PHVPNTRFLKVFKLT---RVSGAYWRGDARNEQLQRIYGTAWADK-KDLEAYVK 233


>gi|88810665|ref|ZP_01125922.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
 gi|88792295|gb|EAR23405.1| threonyl-tRNA synthetase [Nitrococcus mobilis Nb-231]
          Length = 641

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 11/174 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  +        G  I  +G  +D  + +  +  +L++IE  + ++  
Sbjct: 71  LRHSTAHLLAQAVKQLYPDAQVTIGPVI-ENGFYYDFAYQRAFSEQDLRAIEVRMEELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            ++ V   + +R +A+A      +G +Y  R+       E   ++       LC G HV 
Sbjct: 130 ADIEVQREVWDRSEAMAFF--RGIGEEYKARIIEEIPPAEVVSLYRQGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            TG +    +     +     R +A      R +     ++ K+L  +L   + 
Sbjct: 188 RTGMLKAFKLTK---VAGAYWRGDARNEMLQRIYGTAWPDR-KALQHYLHALEE 237


>gi|254498720|ref|ZP_05111436.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
 gi|254352048|gb|EET10867.1| threonyl tRNA synthase [Legionella drancourtii LLAP12]
          Length = 648

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+ ++  S     G  I  DG  +D +  +P T  +L+ IE  + ++  
Sbjct: 80  IRHSTAHLLAQAVKSLFPSAQVTIGPVI-EDGFYYDFSFQRPFTPEDLEQIEAKMMELAK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N P+  R + R++AI       +G +Y  ++       E   ++       LC G HV 
Sbjct: 139 ANYPITRRELPRDEAINYF--KDIGEEYKAKIIADIPATEVLSLYKQGDFEDLCRGPHVP 196

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG +    +     +     R
Sbjct: 197 ATGFLKAFKLTK---LAGAYWR 215


>gi|264679166|ref|YP_003279073.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
 gi|262209679|gb|ACY33777.1| threonyl-tRNA synthetase [Comamonas testosteroni CNB-2]
          Length = 687

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 119 IRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFYYDFSYKRPFTPEDLAAIEKKMTELAN 177

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++  VV R++ R++A+       LG  Y   +       ED  ++       LC G HV 
Sbjct: 178 KDEQVVRRVLPRDEAVQYF--KGLGEAYKAEIIASIPSNEDVSLYREGAFEDLCRGPHVP 235

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++    +     R               ++E L+ +      ++  +   +
Sbjct: 236 STGKLKHFKLMK---VAGAYWR------------GDHRNEMLQRIYGTAWATKDELKDYL 280

Query: 761 EEIWEEYRK 769
             + E  ++
Sbjct: 281 FRLEEAEKR 289


>gi|161869662|ref|YP_001598829.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
 gi|189083614|sp|A9M375|SYT_NEIM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161595215|gb|ABX72875.1| threonyl-tRNA synthetase [Neisseria meningitidis 053442]
          Length = 637

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 85/232 (36%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  + S+ +           I HS  HL+ HA+  +  +     G
Sbjct: 36  VAGKVNGKLVDACDPITEDSSVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G
Sbjct: 96  PVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 153 EEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 199

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 200 LAG--AYWRGDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|124023562|ref|YP_001017869.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303]
 gi|166225478|sp|A2CAU4|SYT_PROM3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123963848|gb|ABM78604.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9303]
          Length = 640

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +          +I HS  HL+ HA+  +        G  I  DG  +D+ +
Sbjct: 50  PIEKDSEVNIITAKDQDGIETIRHSFAHLIGHAVKQLYPEAKMAIGPVI-EDGFYYDIAY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L++IE  + +++  +  V   I++RE+A            Y   +     E 
Sbjct: 109 DQPFTPKDLEAIEARMKELVKLDYDVNVEIVSREEAHKEFEKR--CEPYKIEIVDEIPEN 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E   ++       +C G HV +T  +    ++  S                A        
Sbjct: 167 EIIKLYRHQEYTDMCRGPHVPNTRHLRTFKLMKVSG---------------AYWRGDSNK 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
             L+ +      S   +   ++ + E  ++     AK+
Sbjct: 212 TMLQRIYGTAWGSSKELKAYLKRLEEAEKRDHRRIAKQ 249


>gi|104781106|ref|YP_607604.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
 gi|123079219|sp|Q1IC15|SYT_PSEE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|95110093|emb|CAK14798.1| threonyl-tRNA synthetase [Pseudomonas entomophila L48]
          Length = 640

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 20/221 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPDDLAAIEKRMQQLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            +  VV ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 TDYDVVKKMTPRAEVIDVFTSR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S       R +A   Q  R +     +K K LA++        + R+
Sbjct: 188 NTRFLKAFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADK-KQLAAY--------IQRI 235

Query: 761 EEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           EE  +  +RK+        LQ     +             +
Sbjct: 236 EEAEKRDHRKIGKQLDLFHLQEEAPGMVFWHANGWTVYQVL 276


>gi|319942329|ref|ZP_08016644.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
 gi|319804202|gb|EFW01102.1| threonyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B]
          Length = 636

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 11/168 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   +    + V  I  ++   L I  HS  HL+  A+  +        G  I  +G  
Sbjct: 45  VDLSHVIDGDAAVAIITARDPEGLEIIRHSTAHLMAQAVKELFPEAQVTIGPAI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++++  T  +LK+IE  +++++ +N+P+V   M RE+AI    A  LG  Y   +  
Sbjct: 104 YDFSYTRAFTPEDLKAIEARMDELVKKNIPIVREEMPREEAIDFFKA--LGEHYKAEIIS 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                E   ++       LC G HV S      L +     +     R
Sbjct: 162 SIPAGEVISLYRQGDFVDLCRGPHVPS---TGCLKVHHLMKVAGAYWR 206


>gi|326317187|ref|YP_004234859.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374023|gb|ADX46292.1| threonyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 639

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 21/191 (10%)

Query: 574 TIDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ID+  R Q+           I HS  HL+ HA+  +  +     G  I  +G  +D+ +
Sbjct: 50  VIDHDARLQIITPRDQEGVEIIRHSCAHLVGHAVKQLYPTAKMVIGPVI-EEGFYYDIAY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L +IE  + ++IAQ+  VV ++  R++ I        G +Y  R+     + 
Sbjct: 109 ERPFTPEDLAAIEQRMKELIAQDYDVVKKMTPRDEVIQVFRER--GEEYKLRLVEDMPDE 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           +  G++       +C G HV +T  + +  +     +     R +A   Q  R +     
Sbjct: 167 KAMGLYYHQEYVDMCRGPHVPNTRFLKVFKLT---RVSGAYWRGDAKNEQLQRIYGTAWA 223

Query: 740 EKLKSLASFLK 750
           +K K L +++K
Sbjct: 224 DK-KDLEAYIK 233


>gi|301629969|ref|XP_002944104.1| PREDICTED: threonyl-tRNA synthetase-like [Xenopus (Silurana)
           tropicalis]
          Length = 841

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPQAQVTIGPVI-ENGFYYDFSYQRPFTPEDLVAIEKRMTELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ PVV R++ R++A+       LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPVVRRVLPRDEAVTYF--KGLGEHYKAEIIASIPRNEDVSLYREGGFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 188 STGKLRHFKLMK---VAGAYWR 206


>gi|88706032|ref|ZP_01103740.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
 gi|88699746|gb|EAQ96857.1| threonyl-tRNA synthetase [Congregibacter litoralis KT71]
          Length = 645

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 84/231 (36%), Gaps = 23/231 (9%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQ--LSINHSATHLLHHALSTILGSHVSQNGSCI 612
           V +          +    L I  +        I HS  HLL  A+  +        G  I
Sbjct: 39  VVNGREVDTSFSIDADAALAIITERDEAGVEIIRHSTAHLLAMAVQDLFPGTQVTIGPVI 98

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             DG  +D       T  +L  IE  + +I++ +LPV   +M+R+ A A  A   +G  Y
Sbjct: 99  -EDGFYYDFAGEHQFTPEDLPKIEARMAEIVSADLPVERIVMDRDAAAA--AFEKMGESY 155

Query: 673 NDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
              +     E E+  ++       LC G HV STG++    +     +     R +A   
Sbjct: 156 KVEIIRDLPEGEEISLYRQGEWMDLCRGPHVPSTGKLGAFKLTK---LAGAYWRGDANNE 212

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
              R +      K K L  +L         R+EE   E R  + I  K  L
Sbjct: 213 MLQRVYGTAWANK-KQLKQYL--------HRIEE--AEKRDHRKIGKKLDL 252


>gi|22299745|ref|NP_682992.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
 gi|73919834|sp|Q8DGW0|SYT_THEEB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22295929|dbj|BAC09754.1| threonyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
          Length = 605

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R   I H+ +H+L  A+  +        G  I  +G  +D  H +P +  +L+ IE  + 
Sbjct: 19  RLKRIRHTTSHILAMAVQKLFPKAQVTIGPWI-ENGFYYDFDHPEPFSEKDLRLIEKEMV 77

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDGGVHSSALCGGT 697
            II + LPV+   + RE+A        LG  Y           +     G     LC G 
Sbjct: 78  KIIKRKLPVIREEVTREEAERR--IRALGEPYKLEILQDLEEPITIYHLGDEWWDLCAGP 135

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV +TGEI     ++  S+     R
Sbjct: 136 HVENTGEIDP-KAIALESVAGAYWR 159


>gi|329904275|ref|ZP_08273747.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548052|gb|EGF32784.1| Threonyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 635

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             V       +  + L I  D        I HS  HLL +A+  +        G  I  +
Sbjct: 42  GKVVDTSFLIDRDVDLAIITDKDADGVDVIRHSTAHLLAYAVKELFPDAQVTIGPTI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D ++ +P T  +L +IE  + ++  ++ PV  ++M+R+DAIA   A  +G  Y   
Sbjct: 101 GFYYDFSYKRPFTPDDLVTIEKKMLELAKRDEPVTRQVMSRDDAIAYFLA--IGEAYKAE 158

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +       ++  +++      LC G HV STG++ +  ++    +     R
Sbjct: 159 LIGAIPADQEVSLYTEGKFTDLCRGPHVPSTGKLKVFKLMK---LAGAYWR 206


>gi|229591579|ref|YP_002873698.1| threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
 gi|259516637|sp|C3JZN7|SYT_PSEFS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229363445|emb|CAY50645.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens SBW25]
          Length = 640

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 78/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  ++ +IE  ++ +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERPFTPDDMAAIEQRMHALIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIDVFTAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|13924628|gb|AAK49079.1|AF258287_1 alanyl-tRNA synthetase [Brassica napus]
          Length = 106

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 44/80 (55%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV   +V  RV+ +
Sbjct: 2   EIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVKAEDVTNRVDNL 61

Query: 764 WEEYRKLQLIHAKRKLQLNV 783
            EE R  +   +  + +  V
Sbjct: 62  LEELRTARKEASDLRSKAAV 81


>gi|134095006|ref|YP_001100081.1| threonyl-tRNA synthetase [Herminiimonas arsenicoxydans]
 gi|166223347|sp|A4G619|SYT_HERAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|133738909|emb|CAL61956.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Herminiimonas arsenicoxydans]
          Length = 635

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 80/199 (40%), Gaps = 8/199 (4%)

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            +   +  DT   +      +     +    G    + +    ++  +  L +  D    
Sbjct: 7   PDGSQREFDTPVTVAQVAANIGAGLAKAALAGKVNGNVVDTSYLIEQDSDLSIITDKDAE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + 
Sbjct: 67  GLDVIRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFYYDFSYKRPFTPEDLLAIEKKMA 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++ PV  +++ R+ A+    +  +G  Y   +       +D  +++      LC G
Sbjct: 126 ELAKKDEPVTRQVLPRDVAVEYFKS--IGEAYKAEIIASIPADQDVSLYTEGKFTDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV STG++ +  ++  + 
Sbjct: 184 PHVPSTGKLKVFKLMKLAG 202


>gi|159903594|ref|YP_001550938.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
 gi|238687108|sp|A9BAX2|SYT_PROM4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|159888770|gb|ABX08984.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211]
          Length = 638

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+++SK  T  +L  IE+ + D+I 
Sbjct: 71  IRHSFAHLIGHAVKQLYPDAKMAIGPII-EDGFYYDISYSKTFTPEDLARIEERIKDLIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            N  VV  I++R+ A+ +         Y   +     E E   ++       +C G HV 
Sbjct: 130 LNYDVVVEIVSRDKALNTFKDR--NEPYKVEIINNIPEGETIKLYKHQEYIDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    ++  S                A       +E L+ +      ++ ++   +
Sbjct: 188 NTKHLNSFKLMRVSG---------------AYWRGDSDNEMLQRIYGTAWANKKDLKAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
             + E  ++      K+
Sbjct: 233 NRLEEAEKRDHRKIGKK 249


>gi|257455909|ref|ZP_05621126.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
 gi|257446655|gb|EEV21681.1| threonyl-tRNA synthetase [Enhydrobacter aerosaccus SK60]
          Length = 642

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ +           I HS  HLL HA+  +        G  I  +G  +D+  
Sbjct: 50  PISEDASVQIITPKDEEGVEIIRHSTAHLLGHAVKQLYPEVKMVIGPVI-EEGFYYDIYS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +++ IE  +  +I Q+  V+ ++  R++ I        G  Y  R+       
Sbjct: 109 ERPFTPEDMEKIEARMTQLINQDYDVIKKMTPRDEVIKVFQDR--GETYKLRLIEDMPNE 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
              G++       +C G HV +T  +    +   S                A      ++
Sbjct: 167 TQMGLYYHQEYVDMCRGPHVPNTRFLKAFKLTKMSG---------------AYWRGDAKN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E+L+ +       + ++   ++ I E  ++      K 
Sbjct: 212 EQLQRIYGTAWADKKDLKAYIQRIEEAEKRDHRKIGKA 249


>gi|241764278|ref|ZP_04762308.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
 gi|241366347|gb|EER60877.1| threonyl-tRNA synthetase [Acidovorax delafieldii 2AN]
          Length = 639

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++ A
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVI-ENGFYYDFAYKRPFTPEDLVAIEKRMAELAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++ P+  R++ R++A+A      LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEPIARRVLPRDEAVAYF--KGLGENYKAEIIASIPSNEDVSLYREGRFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 188 STGKLKFFKLMK---VAGAYWR 206


>gi|171058428|ref|YP_001790777.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
 gi|238689097|sp|B1XYZ3|SYT_LEPCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170775873|gb|ACB34012.1| threonyl-tRNA synthetase [Leptothrix cholodnii SP-6]
          Length = 637

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + D+ A
Sbjct: 75  IRHSTAHLLAYAVKELFPDAQVTIGPTI-ENGFFYDFSYKRPFTPDDLAAIEKKMGDLAA 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PVV  +M R++A++   +  +G  Y   +       +   +++      LC G HV 
Sbjct: 134 KDEPVVRSVMPRDEAVSYFKS--IGEAYKAEIIESIPADQAVSLYAEGKFTDLCRGPHVP 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++    +     R
Sbjct: 192 STGKLKFFKLMK---VAGAYWR 210


>gi|30248961|ref|NP_841031.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
 gi|73919810|sp|Q82VV1|SYT_NITEU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|30138578|emb|CAD84869.1| thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 635

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 10/162 (6%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           + T+  LVL  D  +     I HS  HLL HA+  +        G  I  +G  +D ++ 
Sbjct: 51  IETDSDLVLITDKDSEGLEIIRHSCAHLLAHAVKELFPGTQVTIGPVI-ENGFYYDFSYE 109

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +P T  +L +IE  + +I  + L +  ++ +R  AI       +G  Y  ++     + E
Sbjct: 110 RPFTPEDLVAIEKRMQEISKRALKIERKVWDRSRAINFF--KDIGEHYKAQIIESIPDNE 167

Query: 685 DGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              ++S      LC G HV  T +I +  ++    I     R
Sbjct: 168 PVSLYSQGDFTDLCRGPHVPYTSKIKVFKLMK---IAGAYWR 206


>gi|329118120|ref|ZP_08246832.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465780|gb|EGF12053.1| threonine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 640

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  + ++ +           I HS  HL+ HA+  +        G
Sbjct: 42  VAGKVNGRLVDACDPITEDSTVQIITPKDKEGVEIIRHSCAHLVGHAVKQLYPDAKMVIG 101

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   KP T  ++ +IE  + ++I Q+  VV  +  R + I +      G
Sbjct: 102 PVI-EDGFYYDIATEKPFTPEDVAAIEARMKELINQDYDVVKVMTPRAETIKTFQDR--G 158

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 159 EEYKLRLIEDMPEVEAMGLYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 205

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      S+  +   ++ I E  ++      K+
Sbjct: 206 LAG--AYWRGDSNNEMLQRIYGTAWASKDELKAYIQRIEEAEKRDHRKLGKQ 255


>gi|121634517|ref|YP_974762.1| threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|120866223|emb|CAM09963.1| putative threonyl-tRNA synthetase [Neisseria meningitidis FAM18]
 gi|325131827|gb|EGC54527.1| threonyl-tRNA synthetase [Neisseria meningitidis M6190]
          Length = 648

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 82  IRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIA 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 141 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 198

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +               + G  A       +E L+ +      ++  +   +
Sbjct: 199 NTRFLKNFKLTK-------------LAG--AYWRGDSNNEMLQRIYGTAWATKDELKAYI 243

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 244 QRIEEAEKRDHRKLGKQ 260


>gi|120554978|ref|YP_959329.1| threonyl-tRNA synthetase [Marinobacter aquaeolei VT8]
 gi|166223352|sp|A1U2C3|SYT_MARAV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120324827|gb|ABM19142.1| Ser-tRNA(Thr) hydrolase [Marinobacter aquaeolei VT8]
          Length = 641

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D  + +P T+ ++  IE  + ++  
Sbjct: 71  IRHSTAHLMAMAVQELFPGAQVTIGPVI-ENGFYYDFKYERPFTNEDMARIEKRMEELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           Q+LPV   IM+R++AI       +G +Y  R+       ED   +       LC G HV 
Sbjct: 130 QDLPVSRSIMSRDEAIKLFN--EMGEEYKVRIIEDIPGEEDLSFYRQGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    +     +     R
Sbjct: 188 STGKLKAFKLTK---VAGAYWR 206


>gi|269986162|gb|EEZ92475.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 215

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 7/156 (4%)

Query: 647 LPVVTRIMNREDAIASGAAALL--GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + +   I+ RE A +    ++   G   N  +R+V +       +    CGG H +STGE
Sbjct: 1   MKINASIVPREKAESKYGMSIYQGGVVPNANIRIVKI-----DDYDVEACGGLHCNSTGE 55

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           + L+ I+    I+ G+ RI     + A  ++   D+  K L +   VSQ ++    +  +
Sbjct: 56  VGLIKIIKTERIQDGVVRIVFKAYKPALEYIENLDKLAKDLTALWGVSQEDIYATAKRFF 115

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
            E +  +    +  ++     L   +    N ++ +
Sbjct: 116 SEAKYYKEAKEEGDIEFIRSQLGLTQPNKENGITIL 151


>gi|187251838|ref|YP_001876320.1| threonyl and alanyl tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|186971998|gb|ACC98983.1| Threonyl- and alanyl-tRNA synthetase second additional domain
           [Elusimicrobium minutum Pei191]
          Length = 151

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+A H+L+  +    G   S+N + I     + D        + ++  IE  VN II
Sbjct: 13  EPMHTAEHILNRTMVNAFGCARSKN-AHIEKSKSKCDYFLPSAPAAEQIAEIEKIVNKII 71

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A+NL V+ + M R +       + L     D +RV+ V     G +    C G HV +T 
Sbjct: 72  AENLDVIEKFMPRAEVSKIADISKLPESAGDMLRVIFV-----GDYDVCPCIGKHVKNTA 126

Query: 704 EIMLLYIVSE 713
           EI    I + 
Sbjct: 127 EIGRFKITTW 136


>gi|52840846|ref|YP_094645.1| alanyl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52627957|gb|AAU26698.1| alanyl tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 257

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 99/248 (39%), Gaps = 31/248 (12%)

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            +K  ID +  +  I  +   Q  +  + +S    E++ ++T  ++ +GGQ  D     G
Sbjct: 33  YEKDFIDGSVAMEKIFWSNPYQHTLDTKIISINGNEILLEKTIAFSFSGGQESDRAFING 92

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
               L++   +   +G  +++ + +   L     + +TID+  R +L   H A  L+   
Sbjct: 93  ----LEVLSSR--IDGNLIYYTLPDDHNLAPNDVITMTIDWPRRHRLMRLHFAAELILEL 146

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           ++    S + + G+ I+    R D   +  I+S     + D  N II Q+L +       
Sbjct: 147 VTRT--SMLEKVGAHISESKARIDFKANFNISSI-FSQLLDEYNAIIRQDLVIYKG---- 199

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
                          Y+D          DG   +   CGGTHV ST E+  +  +  S  
Sbjct: 200 ---------------YHDVTNQRRFWKIDG--FAEVPCGGTHVHSTSEVGFIR-LKRSHP 241

Query: 717 RAGIRRIE 724
              I RIE
Sbjct: 242 GKSIERIE 249


>gi|2281029|dbj|BAA21554.1| alanyl t-RNA synthetase [Escherichia coli]
          Length = 78

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884
           I+++    E K S++  V++D+ DR  A +L  + A+ + GG GGGRP MAQ+GG +   
Sbjct: 3   IIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAA 61

Query: 885 ADQAIAGVASFL 896
              A+A V  ++
Sbjct: 62  LPAALASVKGWV 73


>gi|221066194|ref|ZP_03542299.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
 gi|220711217|gb|EED66585.1| threonyl-tRNA synthetase [Comamonas testosteroni KF-1]
          Length = 639

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFYYDFSYKRPFTPEDLAAIEKKMTELAN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++  VV R++ R++A+       LG  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEQVVRRVLPRDEAVQYF--KGLGEAYKAEIIASIPSNEDVSLYREGAFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++    +     R               ++E L+ +      ++  +   +
Sbjct: 188 STGKLKHFKLMK---VAGAYWR------------GDHRNEMLQRIYGTAWATKDELKDYL 232

Query: 761 EEIWEEYRK 769
             + E  ++
Sbjct: 233 FRLEEAEKR 241


>gi|303279022|ref|XP_003058804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459964|gb|EEH57259.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 236

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 86/235 (36%), Gaps = 27/235 (11%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAI-GDG-IRLQITDVQKKAEGIFVHHAIVERG----- 563
             +V D+T  Y   GGQ  DTG  + GDG     +  V+   EG+  H   VE       
Sbjct: 3   CALVLDRTIAYPAGGGQPSDTGRVVLGDGRATFAVRAVEISKEGVVRHLGRVEGADDDEL 62

Query: 564 ---------ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-----LGSHVSQNG 609
                    +      +V+ +D   R   +  HSA HLL  A+S I      G   ++  
Sbjct: 63  SASEASVASVFEPGADVVVHVDVDRRVLHARVHSAGHLLDVAMSEIGLGPESGLVPAKGQ 122

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +    + +             + +   + +++ +        M  +DA A+   +L  
Sbjct: 123 HHVDGAYVEYSGKIDGLDKEKLARDLAAKMTELVERGGATSAETMPYDDAAAACGGSLPA 182

Query: 670 TKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               D   RVV V     G      CGGTHV    EI  + IV    ++ G  R+
Sbjct: 183 YVAKDSTPRVVRVPAAAAG----CPCGGTHVKDVREIGDVEIVGV-RVKKGTTRV 232


>gi|326792022|ref|YP_004309843.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326542786|gb|ADZ84645.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 657

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 23/211 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A H+L  A+  +        G  I  DG  +D    +    A+ + IE  +  I+
Sbjct: 70  AFRHTAAHILAQAVKRVFPEVKLAIGPAI-EDGFYYDFDTERHFVEADFEKIEAEMKKIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            + LP+    + RE+AI     A     Y   +     E E    +       LC G H+
Sbjct: 129 KEKLPIERFELPREEAIKLMEEA--EEPYKVELIRELPEGEKITFYKQGDFVDLCAGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    I+S     AG           A      +++ L  + +     + ++   
Sbjct: 187 MSTKPVEAFKILS----AAG-----------AYWKGNEKNKMLARIYATAFTKKADLAAH 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           +E + EE +K       R+L+L   D    +
Sbjct: 232 LEAL-EEAKKRDHNKLGRELKLFTTDEKVGQ 261


>gi|299533556|ref|ZP_07046932.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
 gi|298718462|gb|EFI59443.1| threonyl-tRNA synthetase [Comamonas testosteroni S44]
          Length = 639

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 77/189 (40%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFYYDFSYKRPFTPEDLAAIEKKMTELAN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++  VV R++ R++A+       +G  Y   +       ED  ++       LC G HV 
Sbjct: 130 KDEQVVRRVLPRDEAVQYF--KGIGEAYKAEIIASIPSNEDVSLYREGAFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++    +     R               ++E L+ +      ++  +   +
Sbjct: 188 STGKLKHFKLMK---VAGAYWR------------GDHRNEMLQRIYGTAWATKDELKDYL 232

Query: 761 EEIWEEYRK 769
             + E  ++
Sbjct: 233 FRLEEAEKR 241


>gi|213156053|ref|YP_002318098.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
 gi|301346223|ref|ZP_07226964.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB056]
 gi|301596041|ref|ZP_07241049.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB059]
 gi|226701414|sp|B7I688|SYT_ACIB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213055213|gb|ACJ40115.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB0057]
          Length = 640

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y  R+  
Sbjct: 104 YDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIKVFTDR--GEEYKLRLVE 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E +  G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEEKAMGLYYHQEYVDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|169797157|ref|YP_001714950.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|184156915|ref|YP_001845254.1| threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|215484620|ref|YP_002326855.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|239500701|ref|ZP_04660011.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB900]
 gi|294839270|ref|ZP_06783953.1| threonyl-tRNA synthetase [Acinetobacter sp. 6013113]
 gi|294840278|ref|ZP_06784961.1| threonyl-tRNA synthetase [Acinetobacter sp. 6014059]
 gi|294858970|ref|ZP_06796739.1| threonyl-tRNA synthetase [Acinetobacter sp. 6013150]
 gi|301510743|ref|ZP_07235980.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB058]
 gi|226701398|sp|B7H005|SYT_ACIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238685492|sp|A3M299|SYT_ACIBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688031|sp|B0V5P2|SYT_ACIBY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690968|sp|B2HTH0|SYT_ACIBC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169150084|emb|CAM87978.1| threonyl-tRNA synthetase [Acinetobacter baumannii AYE]
 gi|183208509|gb|ACC55907.1| Threonyl-tRNA synthetase [Acinetobacter baumannii ACICU]
 gi|193076379|gb|ABO11043.2| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
 gi|213985706|gb|ACJ56005.1| threonyl-tRNA synthetase [Acinetobacter baumannii AB307-0294]
 gi|322506811|gb|ADX02265.1| thrS [Acinetobacter baumannii 1656-2]
 gi|323516680|gb|ADX91061.1| threonyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715]
          Length = 640

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y  R+  
Sbjct: 104 YDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIKVFTDR--GEEYKLRLVE 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E +  G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEEKAMGLYYHQEYVDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|325127774|gb|EGC50682.1| threonyl-tRNA synthetase [Neisseria meningitidis N1568]
          Length = 637

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 23/223 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E E  G++       +C G HV +T  +    +               + G  A   
Sbjct: 162 DMSEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWR 206

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
               +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 207 GDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|270158051|ref|ZP_06186708.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
 gi|269990076|gb|EEZ96330.1| threonyl-tRNA synthetase [Legionella longbeachae D-4968]
          Length = 639

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+ +I  S     G  +  DG  +D    +  T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAQAVKSIFPSAQVTIGPVV-EDGFYYDFAFQRAFTPDDLELIEAKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N PV  R + R++AI    +  +G +Y  ++     + E   ++       LC G HV 
Sbjct: 130 ANYPVTRRELPRDEAIQYFKS--IGEEYKAKIIADIPKDEVLSLYKQGDFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG +    +     +     R
Sbjct: 188 ATGFLKAFKLTK---LAGAYWR 206


>gi|325137877|gb|EGC60452.1| threonyl-tRNA synthetase [Neisseria meningitidis ES14902]
          Length = 637

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R +AI        G +Y  R+     E E  G++       +C G HV 
Sbjct: 130 QDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +               + G  A       +E L+ +      ++  +   +
Sbjct: 188 NTRFLKNFKLTK-------------LAG--AYWRGDSNNEMLQRIYGTAWATKDELKAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 233 QRIEEAEKRDHRKLGKQ 249


>gi|289163681|ref|YP_003453819.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
 gi|288856854|emb|CBJ10665.1| Threonyl tRNA synthetase [Legionella longbeachae NSW150]
          Length = 639

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+ +I  S     G  +  DG  +D    +  T  +L+ IE  + ++  
Sbjct: 71  IRHSTAHLLAQAVKSIFPSAQVTIGPVV-EDGFYYDFAFQRAFTPDDLELIEAKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N PV  R + R++AI    +  +G +Y  ++     + E   ++       LC G HV 
Sbjct: 130 ANYPVTRRELPRDEAIQYFKS--IGEEYKAKIIADIPKDEVLSLYKQGDFEDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG +    +     +     R
Sbjct: 188 ATGFLKAFKLTK---LAGAYWR 206


>gi|297538938|ref|YP_003674707.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
 gi|297258285|gb|ADI30130.1| threonyl-tRNA synthetase [Methylotenera sp. 301]
          Length = 635

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 78/199 (39%), Gaps = 8/199 (4%)

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            +   +  D    + D  + +     +    G      +    ++  +  L +  D    
Sbjct: 7   PDGSERSFDAPVTVADVAMNIGAGLAKAALAGKVNGVLVDTSHLISQDAELAIITDKNPE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I HS  HLL +A+  +        G  I  +G  +D ++ +  T  +L +IE  + 
Sbjct: 67  GVDVIRHSTAHLLAYAVKELFPDAQVTIGPVI-ENGFFYDFSYKRAFTPEDLIAIEKKMV 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++  V  +++ R++A+    +  +G  Y   +       ED  +++      LC G
Sbjct: 126 ELAKKDEQVTRKVLPRDEAVDYFKS--IGEHYKAEIIASIPAGEDVSLYTEGNFTDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV +TG++    ++  + 
Sbjct: 184 PHVPNTGKLKAFKLMKLAG 202


>gi|298369384|ref|ZP_06980702.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283387|gb|EFI24874.1| threonine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 648

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  + S+ +           I HS  HL+ HA+  +  +     G
Sbjct: 47  VAGKVNGKLVDASDPIGKDASVQIITPKDKEGVEIIRHSCAHLIGHAVKQLYPNAKMVIG 106

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   KP T  ++ +IE  + ++I Q+  VV  +  R + I +      G
Sbjct: 107 PVI-EDGFYYDIATDKPFTPDDVAAIEARMKELINQDYDVVKIMTPRAETIKTFQER--G 163

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E+ G++       +C G HV +T  +    +               
Sbjct: 164 EEYKLRLIDDMPEVEEMGLYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 210

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 211 LAG--AYWRGDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 260


>gi|302063985|ref|ZP_07255526.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato K40]
          Length = 590

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDLAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEGMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|78778982|ref|YP_397094.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
 gi|123755107|sp|Q31BT7|SYT_PROM9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78712481|gb|ABB49658.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 638

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      I     ++ +  +V+           I HS  HL+ HA+  I        G  
Sbjct: 38  GKVNDVLIDATLPIKNDSKVVIITSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  DG  +D+   +  T  +L  IE+ +N +I  N  V    +++E+AI +         
Sbjct: 98  I-EDGFYYDIFSEQRFTPEDLIKIENRINKLIKTNYDVEILQVSKEEAIKTFKER--DET 154

Query: 672 YNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           +  R+     E     ++       +C G HV +T  +    ++  S       R     
Sbjct: 155 FKLRIIEEIPEEGLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGS---YWR----- 206

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                     ++E L+ +       +  +   +  I E  ++      K+
Sbjct: 207 -------GNSENEALQRIYGTAWAKEKELKDYLTRIEEAEKRDHRKLGKK 249


>gi|330961090|gb|EGH61350.1| alanyl tRNA synthetase-like protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 187

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 30/212 (14%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +V   T F+AE+GGQ  D GC      R+++T      E I    A  E         + 
Sbjct: 1   MVISPTIFFAESGGQESDKGCIN----RIEVTQATVVDERIIYRLA--EDPDFAVSDLVS 54

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID+  R  L   H A  ++           + + G+ I     R D +    ++    
Sbjct: 55  VEIDWPRRYALMRLHFAAEIVLEFFYKKFPD-LEKIGAHIGQHKARIDFSLEGNVSQY-F 112

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             I   V  ++A  LP+ +R  + +                                   
Sbjct: 113 PEILQGVEHLVAAGLPIESRFTDTKCLRRCWYIKGFSEV--------------------- 151

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            CGGTH+ +TGE+  +  +  ++I A   R+E
Sbjct: 152 PCGGTHLRTTGEVGRIR-LKRNNIGAHKERVE 182


>gi|311105446|ref|YP_003978299.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
 gi|310760135|gb|ADP15584.1| threonyl-tRNA synthetase [Achromobacter xylosoxidans A8]
          Length = 650

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLAAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  V     +R+DA+       +G KY   +       E   ++       LC G HV 
Sbjct: 135 KDEVVTREEWSRDDAVEFF--KGIGEKYKAEIIASIPSNEPLSLYREGDFIDLCRGPHVP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 193 STGKLKVFKLMK---VAGAYWR 211


>gi|330967298|gb|EGH67558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 640

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 94/265 (35%), Gaps = 31/265 (11%)

Query: 522 AEAGGQLGDTGCAIGD-----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576
            E   +  D   ++ D     G  L    V  K +G  V    +    +  + SL +   
Sbjct: 7   PEGSQRSFDHAVSVADVALSIGAGLAKATVAGKVDGKLVDACDL----IENDASLQIITP 62

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                   I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  +L +IE
Sbjct: 63  KDAEGLEIIRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDLAAIE 121

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---- 692
             +  +I ++  V+  +  R + I    A      Y  R+     + +  G++       
Sbjct: 122 QRMQQLIEKDYDVIKIVTPRAEVIEVFTARH--EDYKLRLVEGMPDEQAMGLYYHEEYVD 179

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           +C G HV +T  +    +   S                A      ++E+L+ +       
Sbjct: 180 MCRGPHVPNTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWAD 224

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKR 777
           +  +   ++ I E  ++      KR
Sbjct: 225 KKQLAAYIQRIEEAEKRDHRKIGKR 249


>gi|170721151|ref|YP_001748839.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
 gi|229558042|sp|B1J6U4|SYT_PSEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169759154|gb|ACA72470.1| threonyl-tRNA synthetase [Pseudomonas putida W619]
          Length = 640

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 20/221 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +  T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAYERSFTPEDLAAIEKRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKMTPRAEVIDVFKAR--GEDYKLRLVEDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S       R +A   Q  R +     +K K LA++        + R+
Sbjct: 188 NTRFLKAFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADK-KQLAAY--------IQRI 235

Query: 761 EEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           EE  +  +RK+        LQ     +             +
Sbjct: 236 EEAEKRDHRKIGKQLDLFHLQEEAPGMVFWHANGWTVYQVL 276


>gi|229589378|ref|YP_002871497.1| hypothetical protein PFLU1862 [Pseudomonas fluorescens SBW25]
 gi|229361244|emb|CAY48108.1| hypothetical protein PFLU_1862 [Pseudomonas fluorescens SBW25]
          Length = 208

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 38/229 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +  + E++       +  V+   T F+ + GGQ  DTG   G+   L++T    +     
Sbjct: 12  LTAELEVLSCTPHEGQFAVILQSTIFHPQGGGQPFDTGWL-GESSVLRVT----QEADRV 66

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           VH+       L     +   +D Q R   S  HSA HL+ +   T+         +   P
Sbjct: 67  VHYV---DRPLELG-PVTARVDEQRRALHSRLHSAGHLIGNVGETLG---WMPIKAHHWP 119

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              +      +   + E ++I+  VN  IA + P   R MN ED         L      
Sbjct: 120 GEGKITFIRGEAAQAMEAETIQQQVNQWIAADYP---RHMNLEDGTRQVGFGELP----- 171

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV--SESSIRAGIR 721
                           +  CGGTHV + GE+  + I+  SE      +R
Sbjct: 172 ----------------AYACGGTHVHTLGELGRVSILAMSEKKGALSVR 204


>gi|33592589|ref|NP_880233.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33596580|ref|NP_884223.1| threonyl-tRNA synthetase [Bordetella parapertussis 12822]
 gi|33601133|ref|NP_888693.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
 gi|81425212|sp|Q7VY64|SYT_BORPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81427196|sp|Q7W912|SYT_BORPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81431262|sp|Q7WKF7|SYT_BORBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33572235|emb|CAE41786.1| threonyl-tRNA synthetase [Bordetella pertussis Tohama I]
 gi|33573281|emb|CAE37262.1| threonyl-tRNA synthetase [Bordetella parapertussis]
 gi|33575568|emb|CAE32646.1| threonyl-tRNA synthetase [Bordetella bronchiseptica RB50]
          Length = 649

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+ ++        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKSLFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLQAIEKKMAELAR 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  V     +R++A+A      +G  Y   +       E   ++       LC G HV 
Sbjct: 135 KDEVVTREEWSRDEAVAYF--KGIGEVYKAEIIASIPSNETLSLYREGDFIDLCRGPHVP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 193 STGKLKVFKLMK---VAGAYWR 211


>gi|28869575|ref|NP_792194.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970495|ref|ZP_03398622.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|301384174|ref|ZP_07232592.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13]
 gi|302132643|ref|ZP_07258633.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|38258312|sp|Q883H9|SYT_PSESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28852817|gb|AAO55889.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213924666|gb|EEB58234.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1]
 gi|330876789|gb|EGH10938.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|331016139|gb|EGH96195.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 640

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 76/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  +L +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDLAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEGMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|33862697|ref|NP_894257.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313]
 gi|73919817|sp|Q7V8D2|SYT_PROMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33634613|emb|CAE20599.1| Threonyl-tRNA synthatase [Prochlorococcus marinus str. MIT 9313]
          Length = 640

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +          +I HS  HL+ HA+  +        G  I  DG  +D+ +
Sbjct: 50  PIEKDSEVNIITAKDQDGIETIRHSFAHLIGHAVKQLYPEAKMAIGPVI-EDGFYYDIAY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P T  +L++IE  + +++  +  V   I+++E+A            Y   +     E 
Sbjct: 109 DHPFTPKDLEAIEARMKELVKLDYDVNVEIVSKEEARKEFEKR--CEPYKIEIVDEIPEN 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E   ++       +C G HV +T  +    ++  S                A        
Sbjct: 167 EIIKLYRHQEYTDMCRGPHVPNTRHLRTFKLMKVSG---------------AYWRGDSNK 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
             L+ +      S   +   ++ + E  ++     AK+
Sbjct: 212 TMLQRIYGTAWGSSKELKAYLKRLEEAEKRDHRRIAKQ 249


>gi|169634342|ref|YP_001708078.1| threonyl-tRNA synthetase [Acinetobacter baumannii SDF]
 gi|238688108|sp|B0VKJ4|SYT_ACIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169153134|emb|CAP02213.1| threonyl-tRNA synthetase [Acinetobacter baumannii]
          Length = 640

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+    P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y  R+  
Sbjct: 104 YDIWMPCPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIKVFTDR--GEEYKLRLVE 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E +  G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEEKAMGLYYHQEYVDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|330958898|gb|EGH59158.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 640

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|325141961|gb|EGC64399.1| Threonyl and Alanyl tRNA synthetase second additional domain
           protein [Neisseria meningitidis 961-5945]
          Length = 234

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+      E S V  I  +++  + I  HS  HL+ HA+  +  +     G  I  +G  
Sbjct: 45  VDACDPIVEDSAVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+  
Sbjct: 104 YDIATEKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLID 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESS 715
              E E  G++       +C G HV +T  +    +   + 
Sbjct: 162 DMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTKLAG 202


>gi|330503839|ref|YP_004380708.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
 gi|328918125|gb|AEB58956.1| threonyl-tRNA synthetase [Pseudomonas mendocina NK-01]
          Length = 640

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 24/204 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVID-EGFYYDIAIDRPFTPEDMAAIEKRMAELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ R+  R + I    +   G +Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKRMTPRAEVIELFKSR--GEEYKLRLIDDMPDEQAMGLYFHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +     I     R ++   Q  R +     +K K LA++        + R+
Sbjct: 188 NTRFLKAFKLT---RISGAYWRGDSKNEQLQRVYGTAWADK-KQLAAY--------IQRI 235

Query: 761 EEIWEEY-----RKLQLIHAKRKL 779
           EE  +       ++L L H + + 
Sbjct: 236 EEAEKRDHRRIGKQLDLFHLQEEA 259


>gi|225076640|ref|ZP_03719839.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
 gi|224952046|gb|EEG33255.1| hypothetical protein NEIFLAOT_01690 [Neisseria flavescens
           NRL30031/H210]
          Length = 643

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  +  + +           I HS  HL+ HA+  +        G
Sbjct: 42  VAGKVNGKLVDACDPITEDAHVQIITPKDKEGVEIIRHSCAHLVGHAVKQLYPDAKMVIG 101

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R + +        G
Sbjct: 102 PVI-EDGFYYDIATEKPFTPDDVAAIEARMKELIAQDYDVIKVMTPRAETVKIFQDR--G 158

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 159 EEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 205

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      S+  +   ++ I E  ++      K+
Sbjct: 206 LAG--AYWRGDSNNEMLQRIYGTAWASKDELKAYIQRIEEAEKRDHRKLGKQ 255


>gi|319637847|ref|ZP_07992613.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
 gi|317401002|gb|EFV81657.1| threonyl-tRNA synthetase [Neisseria mucosa C102]
          Length = 637

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  +  + +           I HS  HL+ HA+  +        G
Sbjct: 36  VAGKVNGKLVDACDPITEDAHVQIITPKDKEGVEIIRHSCAHLVGHAVKQLYPDAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   KP T  ++ +IE  + ++IAQ+  VV  +  R + I        G
Sbjct: 96  PVI-EDGFYYDIATEKPFTPDDVAAIEARMKELIAQDYDVVKVMTPRAETIKIFQDR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 153 EEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 199

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      S+  +   ++ I E  ++      K+
Sbjct: 200 LAG--AYWRGDSNNEMLQRIYGTAWASKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|254804601|ref|YP_003082822.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
 gi|254668143|emb|CBA04768.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha14]
          Length = 637

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 83/218 (38%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ +           I HS  HL+ HA+  +  +     G  I  +G  +D+  
Sbjct: 50  PITEDSSVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFYYDIAT 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+     + 
Sbjct: 109 EKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMPKV 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E  G++       +C G HV +T  +    +               + G  A       +
Sbjct: 167 EAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWRGDSNN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 212 EMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|37784136|gb|AAO83540.1| alanyl-tRNA synthetase [Hydrogenothermus marinus]
          Length = 54

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 38/53 (71%)

Query: 40 NSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          N+GMV FKN+F G EK  Y+   + QK  R  GKHNDLDNVG T RHHTFFEM
Sbjct: 1  NAGMVQFKNVFLGLEKRPYKRAASCQKVFRVSGKHNDLDNVGYTPRHHTFFEM 53


>gi|260556061|ref|ZP_05828280.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
 gi|260410116|gb|EEX03415.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 640

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L TE S +  I  ++   L I  HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDACDLITEDSTLQIITPKDEEGLEIIRHSCAHLVGHAVKQLFPEAKMVIGPVI-EEGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G +Y  R+  
Sbjct: 104 YDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIRVFTDR--GEEYKLRLVE 161

Query: 679 VSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
              E +  G++       +C G HV +T  +    +     I     R +A   Q  R +
Sbjct: 162 DMPEEKAMGLYYHQEYVDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDAKNEQLQRIY 218

Query: 735 LMGQDEKLKSLASFLK 750
                +K K LA+++K
Sbjct: 219 GTAWADK-KQLAAYIK 233


>gi|161831126|ref|YP_001597175.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
 gi|161762993|gb|ABX78635.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 331]
          Length = 660

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    I+  ++SL +  +        I HSA HLL HA+  +        G  
Sbjct: 47  GKIDDHLVDVSFIIDKDVSLRIITEKDPEGLEVIRHSAAHLLAHAVKELFPKAEVTIGPV 106

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D    +  T  +L+ IE+ +  +   +L V  R+++R++A+       +G +
Sbjct: 107 V-EDGFYYDFAFERSFTPEDLEKIEEKMRSLAKADLAVERRVLSRDEALTLF--KKMGER 163

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E    +       LC G HV  TG +    +               + 
Sbjct: 164 YKVEIIRDIPKEEILTAYQQGDFIDLCRGPHVPRTGMLKAFKLTK-------------LA 210

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           G  A       +E L+ +          +   +  + E  ++   + AK+
Sbjct: 211 G--AYWRGDSNNEMLQRIYGTAWADTKALKAYLYRLEEAEKRDHRLLAKK 258


>gi|254674303|emb|CBA10087.1| Threonyl-tRNA synthetase [Neisseria meningitidis alpha275]
          Length = 637

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ +           I HS  HL+ HA+  +  +     G  I  +G  +D+  
Sbjct: 50  PITEDSSVQIITPKDQEGIEIIRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFYYDIAT 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            KP T  ++ +IE  + ++IAQ+  VV  +  R +AI        G +Y  R+     E 
Sbjct: 109 EKPFTPEDVAAIEARMKELIAQDYDVVKIMTPRAEAIKIFQER--GEEYKLRLIDDMSEV 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E  G++       +C G HV +T  +    +               + G  A       +
Sbjct: 167 EAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK-------------LAG--AYWRGDSNN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 212 EMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|325293128|ref|YP_004278992.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
 gi|325060981|gb|ADY64672.1| Threonyl-tRNA synthetase [Agrobacterium sp. H13-3]
          Length = 667

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           T+  + +     +R    I H A H++  A+  +        G  I  +G  +D   ++P
Sbjct: 55  TDGKIEIVTREDSRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEP 113

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T  +L  IE  + +II +N P    + +RE A    AA   G  Y   +     E +D 
Sbjct: 114 FTPEDLPKIEKRMKEIIQRNKPFTREVWSREKAKEVFAAK--GENYKVELVDAIPEGQDL 171

Query: 687 GVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
            ++       LC G H++STG++     ++    +     R
Sbjct: 172 KIYYQGDWFDLCRGPHMASTGQVGTAFKLMK---VAGAYWR 209


>gi|215919162|ref|NP_820316.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
 gi|206584046|gb|AAO90830.2| threonyl-tRNA synthetase [Coxiella burnetii RSA 493]
          Length = 660

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    I+  ++SL +  +        I HSA HLL HA+  +        G  
Sbjct: 47  GKIDDHLVDVSFIIDKDVSLRIITEKDPEGLEVIRHSAAHLLAHAVKELFPKAEVTIGPV 106

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D    +  T  +L+ IE+ +  +   +L V  R+++R++A+       +G +
Sbjct: 107 V-EDGFYYDFAFERSFTPEDLEKIEEKMRSLAKADLAVERRVLSRDEALTLF--KKMGER 163

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E    +       LC G HV  TG +    +               + 
Sbjct: 164 YKVEIIRDIPKEEILTAYQQGDFIDLCRGPHVPRTGMLKAFKLTK-------------LA 210

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           G  A       +E L+ +          +   +  + E  ++   + AK+
Sbjct: 211 G--AYWRGDSNNEMLQRIYGTAWADTKALKAYLYRLEEAEKRDHRLLAKK 258


>gi|289673298|ref|ZP_06494188.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae FF5]
 gi|330898079|gb|EGH29498.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 640

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           +T  +    +   S       R +A   Q  R +     +K +  A  L++ +  
Sbjct: 188 NTRFLKSFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADKKQLAAYILRIEEAE 239


>gi|237801015|ref|ZP_04589476.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023872|gb|EGI03929.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 640

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           +T  +    +   S       R +A   Q  R +     +K +  A  L++ +  
Sbjct: 188 NTRFLKSFKLTKLSG---AYWRGDAKNEQLQRIYGTAWADKKQLAAYILRIEEAE 239


>gi|154706797|ref|YP_001424763.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|154356083|gb|ABS77545.1| threonyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111]
          Length = 660

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    I+  ++SL +  +        I HSA HLL HA+  +        G  
Sbjct: 47  GKIDDHLVDVSFIIDKDVSLRIITEKDPEGLEVIRHSAAHLLAHAVKELFPKAEVTIGPV 106

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D    +  T  +L+ IE+ +  +   +L V  R+++R++A+       +G +
Sbjct: 107 V-EDGFYYDFAFERSFTPEDLEKIEEKMRSLAKADLAVERRVLSRDEALTLF--KKMGER 163

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E    +       LC G HV  TG +    +               + 
Sbjct: 164 YKVEIIRDIPKEEILTAYQQGDFIDLCRGPHVPRTGMLKAFKLTK-------------LA 210

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           G  A       +E L+ +          +   +  + E  ++   + AK+
Sbjct: 211 G--AYWRGDSNNEMLQRIYGTAWADTKALKAYLYRLEEAEKRDHRLLAKK 258


>gi|313202649|ref|YP_004041306.1| threonyl/alanyl tRNA synthetase sad [Paludibacter propionicigenes
           WB4]
 gi|312441965|gb|ADQ78321.1| Threonyl/alanyl tRNA synthetase SAD [Paludibacter propionicigenes
           WB4]
          Length = 151

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           I+   +      H+  H+L+  +  + G   S N + I     + D   S+  T  ++  
Sbjct: 5   INQPKKDYCEPMHTCEHILNQTMIRMFGCPRSMN-AHIEKKKSKCDYVLSEAPTEEQISE 63

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           + D VN +I Q+LPV    M+R+DA      + L     + +R++ V     G + +  C
Sbjct: 64  LVDKVNAVINQHLPVTIDFMDRKDAAQLVDLSKLPADATETLRIIRV-----GDYDACAC 118

Query: 695 GGTHVSSTGEIMLLYIVS 712
            G HVS+T E+    I+S
Sbjct: 119 IGQHVSNTAELGRFEIIS 136


>gi|54296629|ref|YP_122998.1| hypothetical protein lpp0660 [Legionella pneumophila str. Paris]
 gi|53750414|emb|CAH11808.1| hypothetical protein lpp0660 [Legionella pneumophila str. Paris]
          Length = 214

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 31/213 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E++ ++T  ++ +GGQ  D     G    L++   +   +G  +++ + +   L     +
Sbjct: 25  EILLEKTIAFSFSGGQESDRAFING----LEVLSSR--IDGNLIYYTLPDDHNLAPNDVI 78

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            +TID+  R +L   H A  L+   ++    S + + G+ I+    R D   +  I+S  
Sbjct: 79  TMTIDWPRRHRLMRLHFAAELILELVTRT--SMLEKVGAHISESKARIDFKANFNISSI- 135

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              + D  N II Q+L +     +                  ++ R   ++       + 
Sbjct: 136 FSQLLDEYNAIIRQDLVIYKGYHD----------------VTNQRRFWKIDG-----FAE 174

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTHV ST E+  +  +  S     I RIE
Sbjct: 175 VPCGGTHVHSTSEVGFIR-LKRSHPGKSIERIE 206


>gi|293604689|ref|ZP_06687089.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
 gi|292816858|gb|EFF75939.1| threonine--tRNA ligase [Achromobacter piechaudii ATCC 43553]
          Length = 650

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L +IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKELFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLVAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  V     +R+DA+       +G KY   +       E   ++       LC G HV 
Sbjct: 135 KDEVVTREEWSRDDAVEFF--KGIGEKYKAEIIASIPSNEPLSLYREGDFIDLCRGPHVP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 193 STGKLKVFKLMK---VAGAYWR 211


>gi|212212292|ref|YP_002303228.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010702|gb|ACJ18083.1| threonyl-tRNA synthetase [Coxiella burnetii CbuG_Q212]
          Length = 660

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    I+  ++SL +  +        I HSA HLL HA+  +        G  
Sbjct: 47  GKIDDHLVDVSFIIDKDVSLRIITEKDPEGLEVIRHSAAHLLAHAVKELFPKAEVTIGPV 106

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D    +  T  +L+ IE+ +  +   +L V  R+++R++A+       +G +
Sbjct: 107 V-EDGFYYDFAFERSFTPEDLEKIEEKMRSLAKADLAVERRVLSRDEALTLF--KKMGER 163

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E    +       LC G HV  TG +    +               + 
Sbjct: 164 YKVEIIRDIPKEEILTAYQQGDFIDLCRGPHVPRTGMLKAFKLTK-------------LA 210

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           G  A       +E L+ +          +   +  + E  ++   + AK+
Sbjct: 211 G--AYWRGDSNNEMLQRIYGTAWADTKALKAYLYRLEEAEKRDHRLLAKK 258


>gi|13924622|gb|AAK49077.1|AF258285_1 alanyl-tRNA synthetase [Brassica rapa]
          Length = 103

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI  + I+SE  I +GIRRIEA+ G+    ++  +D ++K L S LKV   +V  RV+ +
Sbjct: 2   EIRAVKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMKRLCSTLKVKAEDVTNRVDNL 61

Query: 764 WEEYRKLQLIHAKRKLQLNV 783
            EE R  +   +  + +  V
Sbjct: 62  LEELRTARKEASDLRSKAAV 81


>gi|73919786|sp|Q83C10|SYT_COXBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 651

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    I+  ++SL +  +        I HSA HLL HA+  +        G  
Sbjct: 38  GKIDDHLVDVSFIIDKDVSLRIITEKDPEGLEVIRHSAAHLLAHAVKELFPKAEVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D    +  T  +L+ IE+ +  +   +L V  R+++R++A+       +G +
Sbjct: 98  V-EDGFYYDFAFERSFTPEDLEKIEEKMRSLAKADLAVERRVLSRDEALTLF--KKMGER 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E    +       LC G HV  TG +    +               + 
Sbjct: 155 YKVEIIRDIPKEEILTAYQQGDFIDLCRGPHVPRTGMLKAFKLTK-------------LA 201

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           G  A       +E L+ +          +   +  + E  ++   + AK+
Sbjct: 202 G--AYWRGDSNNEMLQRIYGTAWADTKALKAYLYRLEEAEKRDHRLLAKK 249


>gi|299537247|ref|ZP_07050550.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
 gi|298727488|gb|EFI68060.1| threonyl-tRNA synthetase [Lysinibacillus fusiformis ZC1]
          Length = 638

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 100/237 (42%), Gaps = 16/237 (6%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           + +   Q    G  + D  +    +++KKA    V+  I++      E + +   D  ++
Sbjct: 10  FPDGQQQAFTKGVTLTDIAQAIRPELRKKAVAGSVNGTIIDLTRPIMEDAQITLYDASSK 69

Query: 581 RQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             +  I HS  HL   A+  +   H       +  +G  +D+  +  +T ++L+ IE  +
Sbjct: 70  EGIEVIRHSTAHLFAQAIKRLYP-HAQFGVGPVIENGFYYDIDIADTLTPSDLQQIEKKM 128

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND--RVRVVSVEYEDGGVHSSALCGGT 697
             I+ +N+PV  R ++RE+A    A  +L  +  +      +   YE G  +   LC G 
Sbjct: 129 KQIVQENIPVHRREVSREEAKQLFAHDVLKLELLEAIPADELVTIYEQGEFYD--LCRGP 186

Query: 698 HVSSTGEIMLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           HV STG++    ++  S       S    ++RI      T +  R H +  +E  K 
Sbjct: 187 HVQSTGKLQHFKLMHVSGAYWRGDSKNQMLQRIYGVAFATKEELRDHFIFLEEAEKR 243


>gi|148358548|ref|YP_001249755.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|296108363|ref|YP_003620064.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
 gi|166223351|sp|A5IAK9|SYT_LEGPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148280321|gb|ABQ54409.1| threonyl tRNA synthase [Legionella pneumophila str. Corby]
 gi|295650265|gb|ADG26112.1| threonyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy]
          Length = 637

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  
Sbjct: 45  VDTSYLIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVI-EDGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D    +  T  +L  IE  ++++   NL +  R + R +AI    +  LG +Y  ++  
Sbjct: 104 YDFAFERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYFKS--LGEEYKAKIIA 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E E   ++       LC G HV STG +    +     +     R
Sbjct: 162 DIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLTK---VAGAYWR 206


>gi|269213639|ref|ZP_05982445.2| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
 gi|269145722|gb|EEZ72140.1| threonine--tRNA ligase [Neisseria cinerea ATCC 14685]
          Length = 643

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  +  + +           I HS  HL+ HA+  +        G
Sbjct: 42  VAGKVNGKLVDACDPIAEDAHVQIITPKDKEGVEIIRHSCAHLVGHAVKQLYPDAKMVIG 101

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R + I        G
Sbjct: 102 PVI-EDGFYYDIATEKPFTPDDVAAIEARMKELIAQDYDVIKVMTPRAETIKIFQDR--G 158

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 159 EEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 205

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      S+  +   ++ I E  ++      K+
Sbjct: 206 LAG--AYWRGDSNNEMLQRVYGTAWASKDELKAYIQRIEEAEKRDHRKLGKQ 255


>gi|326574765|gb|EGE24699.1| threonyl-tRNA synthetase [Moraxella catarrhalis O35E]
          Length = 639

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  +  +I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLDDMAKIEARMIQLINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|330973951|gb|EGH74017.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 640

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|330943371|gb|EGH45740.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 640

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           +T  +    +   S       R +A   Q  R +     +K +  A  L++ +  
Sbjct: 188 NTRFLKSFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADKKQLAAYVLRIEEAE 239


>gi|284799642|ref|ZP_05984463.2| threonine--tRNA ligase [Neisseria subflava NJ9703]
 gi|284797591|gb|EFC52938.1| threonine--tRNA ligase [Neisseria subflava NJ9703]
          Length = 643

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  +  + +           I HS  HL+ HA+  +        G
Sbjct: 42  VAGKVNGKLVDACDPITEDAHVQIITPKDKEGVEIIRHSCAHLVGHAVKQLYPDAKMVIG 101

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R + +        G
Sbjct: 102 PVI-EDGFYYDIATEKPFTPDDVAAIEARMKELIAQDYDVIKVMTPRAETVKIFQDR--G 158

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 159 EEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 205

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      S+  +   ++ I E  ++      K+
Sbjct: 206 LAG--AYWRGDSNNEMLQRVYGTAWASKDELKAYIQRIEEAEKRDHRKLGKQ 255


>gi|326572997|gb|EGE22976.1| threonyl-tRNA synthetase [Moraxella catarrhalis CO72]
          Length = 639

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  +  +I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLDDMAKIEARMIQLINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|326563502|gb|EGE13765.1| threonyl-tRNA synthetase [Moraxella catarrhalis 103P14B1]
 gi|326573810|gb|EGE23767.1| threonyl-tRNA synthetase [Moraxella catarrhalis 101P30B1]
          Length = 639

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  +  +I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLDDMAKIEARMIQLINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|326562776|gb|EGE13071.1| threonyl-tRNA synthetase [Moraxella catarrhalis 46P47B1]
 gi|326563180|gb|EGE13448.1| threonyl-tRNA synthetase [Moraxella catarrhalis 12P80B1]
          Length = 639

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  +  +I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLDDMAKIEARMIQLINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|164685973|ref|ZP_01946163.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218739|ref|YP_002305526.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
 gi|164601497|gb|EAX33218.2| threonyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013001|gb|ACJ20381.1| threonyl-tRNA synthetase [Coxiella burnetii CbuK_Q154]
          Length = 660

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    I+  ++SL +  +        I HSA HLL HA+  +        G  
Sbjct: 47  GKIDDHLVDVSFIIDKDVSLRIITEKDPEGLEVIRHSAAHLLAHAVKELFPKAEVTIGPV 106

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D    +  T  +L+ IE+ +  +   +L V  R+++R++A+       +G +
Sbjct: 107 V-EDGFYYDFAFERSFTPEDLEKIEEKMRSLAKADLAVERRVLSRDEALTLF--KKMGER 163

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E    +       LC G HV  TG +    +               + 
Sbjct: 164 YKVEIIRDIPKEEILTAYQQGDFIDLCRGPHVPRTGMLKAFKLTK-------------LA 210

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           G  A       +E L+ +          +   +  + E  ++   + AK+
Sbjct: 211 G--AYWQGDSNNEMLQRIYGTAWADTKALKAYLYRLEEAEKRDHRLLAKK 258


>gi|327481051|gb|AEA84361.1| threonyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVID-EGFYYDIAIDRPFTPEDMAAIEKRMAELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTSR--GEDYKLRLVDDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +     I     R               ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKAFKLT---RISGAYWR------------GDSKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 233 QRIEEAEKRDHRRIGKQ 249


>gi|302187613|ref|ZP_07264286.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|165924098|ref|ZP_02219930.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
 gi|165916454|gb|EDR35058.1| threonyl-tRNA synthetase [Coxiella burnetii RSA 334]
          Length = 653

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 22/230 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G    H +    I+  ++SL +  +        I HSA HLL HA+  +        G  
Sbjct: 47  GKIDDHLVDVSFIIDKDVSLRIITEKDPEGLEVIRHSAAHLLAHAVKELFPKAEVTIGPV 106

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  DG  +D    +  T  +L+ IE+ +  +   +L V  R+++R++A+       +G +
Sbjct: 107 V-EDGFYYDFAFERSFTPEDLEKIEEKMRSLAKADLAVERRVLSRDEALTLF--KKMGER 163

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     + E    +       LC G HV  TG +    +               + 
Sbjct: 164 YKVEIIRDIPKEEILTAYQQGDFIDLCRGPHVPRTGMLKAFKLTK-------------LA 210

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           G  A       +E L+ +          +   +  + E  ++   + AK+
Sbjct: 211 G--AYWQGDSNNEMLQRIYGTAWADTKALKAYLYRLEEAEKRDHRLLAKK 258


>gi|146282712|ref|YP_001172865.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
 gi|166225484|sp|A4VM22|SYT_PSEU5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145570917|gb|ABP80023.1| threonyl-tRNA synthetase [Pseudomonas stutzeri A1501]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVID-EGFYYDIAIDRPFTPEDMAAIEKRMAELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTSR--GEDYKLRLVDDMPDEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +     I     R               ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKAFKLT---RISGAYWR------------GDSKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 233 QRIEEAEKRDHRRIGKQ 249


>gi|330989241|gb|EGH87344.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|320324302|gb|EFW80381.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320328576|gb|EFW84578.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330885566|gb|EGH19715.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|289623636|ref|ZP_06456590.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647146|ref|ZP_06478489.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298486701|ref|ZP_07004758.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158784|gb|EFH99847.1| Threonyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867695|gb|EGH02404.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|257486172|ref|ZP_05640213.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010502|gb|EGH90558.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|239814876|ref|YP_002943786.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
 gi|259516786|sp|C5CUU2|SYT_VARPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239801453|gb|ACS18520.1| threonyl-tRNA synthetase [Variovorax paradoxus S110]
          Length = 635

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 30/216 (13%)

Query: 574 TIDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ID+  R Q+           I HS  HL+ HA+  +  +     G  I  +G  +D+++
Sbjct: 50  VIDHDARLQIITPRDDEGLEIIRHSTAHLVGHAVKQLYPTAKMVIGPVI-EEGFYYDISY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  ++ +IE  + ++IAQ+  VV ++  R + I    +   G  Y  R+     + 
Sbjct: 109 ERPFTPEDMAAIEARMRELIAQDYDVVKKMTPRAEVIEVFKSR--GEDYKLRLVEDMPDE 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           +  G++       +C G HV +T  + +  +     +     R +A   Q  R +     
Sbjct: 167 QAMGLYYHQEYVDMCRGPHVPNTRFLKVFKLTK---LAGAYWRGDAKNEQLQRIYGTAWA 223

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEE-YRKLQLIH 774
           +         K      + R+EE  +  +RKL    
Sbjct: 224 D---------KKQLDQYIQRIEEAEKRDHRKLGKEL 250


>gi|71735831|ref|YP_274354.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|123747652|sp|Q48JS3|SYT_PSE14 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71556384|gb|AAZ35595.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|213692035|ref|YP_002322621.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|254783509|sp|B7GR13|SYT_BIFLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|213523496|gb|ACJ52243.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458147|dbj|BAJ68768.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 677

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  +T+D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLADGDTVEPITLDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             KP T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDKPFTPEDLKDIEKRIQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWATKDDLKAYQTRLEEAAK 253


>gi|15889049|ref|NP_354730.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
 gi|22654115|sp|Q8UEL1|SYT_AGRT5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15156846|gb|AAK87515.1| threonyl-tRNA synthetase [Agrobacterium tumefaciens str. C58]
          Length = 667

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
           T+  + +      R    I H A H++  A+  +        G  I  +G  +D   ++P
Sbjct: 55  TDGKIEIVTREDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEP 113

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            T  +L  IE  + +II +N P    I +RE A    AA   G  Y   +     E +D 
Sbjct: 114 FTPEDLPKIEKRMKEIIQRNKPFTREIWSREKAKEVFAAK--GENYKVELVDAIPEGQDL 171

Query: 687 GVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
            ++       LC G H++STG+I     ++    +     R
Sbjct: 172 KIYYQGDWFDLCRGPHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|332161958|ref|YP_004298535.1| hypothetical protein YE105_C2336 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605988|emb|CBY27486.1| metal-dependent hydrolase related to alanyl-tRNA synthetase
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666188|gb|ADZ42832.1| hypothetical protein YE105_C2336 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 208

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 82/226 (36%), Gaps = 37/226 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +    +++  A  G++  V+   T F+ + GGQ  DTG   G+   L++   Q++   I 
Sbjct: 12  LTMDVDVLSCAPDGEEFAVILLATIFHPQGGGQPSDTGYI-GNNQVLRVVQQQEQL--IH 68

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                +  G      +    +D + R   +  HSA HL+ +      G       +   P
Sbjct: 69  YLTKSIAPG------TYYARVDNERRLLNTRMHSAGHLIGNIG---EGYGWRPVKAHHWP 119

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              R     ++     ++  I+  +   I Q+LP    +                     
Sbjct: 120 GEGRVSFKRTQNPQVLDIDIIQAALEQFIRQDLPRQISV--------------------- 158

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           +     V + +   +    CGGTHV S  E+  + + S S  + G+
Sbjct: 159 QGNFREVGFGELSAY---ACGGTHVGSLHELGKVTVQSISE-KKGV 200


>gi|71908290|ref|YP_285877.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
 gi|123733181|sp|Q47CM4|SYT_DECAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71847911|gb|AAZ47407.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Dechloromonas
           aromatica RCB]
          Length = 638

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 78/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D  + +P T  +L +IE  + ++  
Sbjct: 71  IRHSTAHLLAYAVKELFPEAQVTIGPVI-ENGFYYDFAYKRPFTPEDLVAIEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +++PV   +  R+DA+       LG KY   +       +   ++       LC G HV 
Sbjct: 130 KDIPVSREVWARDDAVKFFLD--LGEKYKAELIGAIPADQQVSLYREGDFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T ++ +  ++    +     R               ++E+L+ +       + ++   +
Sbjct: 188 TTAKLKVFKLMK---VAGAYWR------------GDHRNEQLQRIYGTAWAKKEDLDAYL 232

Query: 761 EEIWEEYRKLQLIHAKR 777
             + E  ++      K+
Sbjct: 233 HMLEEAEKRDHRRLGKQ 249


>gi|54298706|ref|YP_125075.1| threonyl-tRNA synthetase [Legionella pneumophila str. Paris]
 gi|73919801|sp|Q5X1H3|SYT_LEGPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53752491|emb|CAH13923.1| Threonyl tRNA synthetase [Legionella pneumophila str. Paris]
          Length = 637

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  
Sbjct: 45  VDTSYLIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVI-EDGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D    +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++  
Sbjct: 104 YDFAFERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYF--KGLGEEYKAKIIA 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E E   ++       LC G HV STG +    +     +     R
Sbjct: 162 DIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLTK---VAGAYWR 206


>gi|238564835|ref|XP_002385735.1| hypothetical protein MPER_16299 [Moniliophthora perniciosa FA553]
 gi|215435605|gb|EEB86665.1| hypothetical protein MPER_16299 [Moniliophthora perniciosa FA553]
          Length = 80

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58
            S +R  F  +F+   H L+PSSS IP +DPTL+F N+GM  +K IF G   P      
Sbjct: 12 TASKVRDEFFNYFRSREHTLVPSSSTIPYDDPTLLFANAGMNQYKAIFLGTVDPNSDLAK 71

Query: 59 -QAVTTVQK 66
           +     QK
Sbjct: 72 LKRAFNSQK 80


>gi|296127837|ref|YP_003635089.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
 gi|296019653|gb|ADG72890.1| threonyl-tRNA synthetase [Brachyspira murdochii DSM 12563]
          Length = 643

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 23/176 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +  +     G  I  DG  +D    KP T  +L  IED +  II 
Sbjct: 70  LRHSTSHLMAQAVRRLYPNTQVTIGPAI-KDGFYYDFDAEKPFTEEDLPKIEDEMKKIIK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGT 697
           +N+PVV ++MN+ +AI     A      N+  +V  +E  D    S         LC G 
Sbjct: 129 ENIPVVRKVMNKNEAIEYFKKA------NEPYKVEIIEGIDADTVSFYEQGDFIDLCRGP 182

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           HV STG I    ++S +            + RI       + A    + + ++ K 
Sbjct: 183 HVPSTGYIKSYKLMSVAGSYWRGDSNNKMLSRIYGTAFESKEALDKYLKRLKEAKE 238


>gi|86607055|ref|YP_475818.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
 gi|86555597|gb|ABD00555.1| threonyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 603

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H+L  A+  +        G   T  G  +D  H +P T  +L+ I+  +  II
Sbjct: 28  RIRHTTSHVLAMAVQRLFPKAQVTIGPT-TDYGFYYDFDHPEPFTPEDLERIKKEMQAII 86

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTH 698
            + LPV+   ++RE+A     A  LG  Y   +     E E       G     LC G H
Sbjct: 87  KKGLPVIREEVSREEARRRIEA--LGEPYKLEILDSIPEGEPITIYHLGDEWWDLCAGPH 144

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V +T EI         S+     R
Sbjct: 145 VENTKEINP-KAFDLLSVAGAYWR 167


>gi|66045402|ref|YP_235243.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a]
 gi|75502334|sp|Q4ZUG7|SYT_PSEU2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|63256109|gb|AAY37205.1| Threonyl-tRNA synthetase, class IIa [Pseudomonas syringae pv.
           syringae B728a]
          Length = 640

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPSEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|73919802|sp|Q5ZS05|SYT_LEGPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 637

 Score = 84.4 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  
Sbjct: 45  VDTSYLIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVI-EDGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D    +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++  
Sbjct: 104 YDFAFERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYF--KDLGEEYKAKIIA 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E E   ++       LC G HV STG +    +     +     R
Sbjct: 162 DIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLTK---VAGAYWR 206


>gi|330888315|gb|EGH20976.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 402

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|307611592|emb|CBX01274.1| threonyl tRNA synthetase [Legionella pneumophila 130b]
          Length = 637

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  
Sbjct: 45  VDTSYLIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVI-EDGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D    +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++  
Sbjct: 104 YDFAFERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYF--KGLGEEYKAKIIA 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E E   ++       LC G HV STG +    +     +     R
Sbjct: 162 DIPENESLSLYRQGDFEDLCRGPHVPSTGFLKAFKLTK---VAGAYWR 206


>gi|241758603|ref|ZP_04756718.1| threonine--tRNA ligase [Neisseria flavescens SK114]
 gi|241321255|gb|EER57427.1| threonine--tRNA ligase [Neisseria flavescens SK114]
          Length = 637

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  +  + +           I HS  HL+ HA+  +        G
Sbjct: 36  VAGKVNGKLVDACDPITEDAHVQIITPKDKEGVEIIRHSCAHLVGHAVKQLYPDAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R + +        G
Sbjct: 96  PVI-EDGFYYDIATEKPFTPDDVAAIEARMKELIAQDYDVIKVMTPRAETVKIFQDR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 153 EEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 199

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      S+  +   ++ I E  ++      K+
Sbjct: 200 LAG--AYWRGDSNNEMLQRVYGTAWASKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|57234472|ref|YP_181487.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
 gi|123759710|sp|Q3Z8G2|SYT_DEHE1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57224920|gb|AAW39977.1| threonyl-tRNA synthetase [Dehalococcoides ethenogenes 195]
          Length = 582

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 19/235 (8%)

Query: 574 TIDYQN---RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ID        ++   HSA H++  A+ ++        G  I   G  +D    + +T  
Sbjct: 4   QIDEAKPISDLEIMR-HSAAHIMAEAVLSMFPEAKLGIGPAIDT-GFYYDFDLPRTLTPE 61

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +N ++  NLP     M++++A    A      +  D +    V     G   
Sbjct: 62  DLPEIETRMNQLVKANLPFRREEMSKDEARKLFADQPYKLELLDDIPDEIVSVYRQGN-L 120

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC G HV+ T ++    ++S   I     R     G   R  L      +   A   K
Sbjct: 121 CDLCRGPHVNYTSKVKAFKLLS---IAGAYWR-----GDEKRPMLQR----IYGAAFLDK 168

Query: 751 VSQGNVVGRVEE-IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            S    +  +EE    ++RKL        L   +     + + +   + H+I E 
Sbjct: 169 ASLAEYLNMLEESAKRDHRKLGKELELFSLHQEIGGGLVNWLPNGAIVRHLIEEF 223


>gi|52842920|ref|YP_096719.1| threonyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52630031|gb|AAU28772.1| threonyl tRNA synthase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 646

 Score = 84.4 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  
Sbjct: 54  VDTSYLIKEDCSLIIVTEKHEDSLEIIRHSTAHLLAQAVKALFPSAQVTIGPVI-EDGFY 112

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D    +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++  
Sbjct: 113 YDFAFERSFTPDDLSLIEAKMHELAKANLSITRRELPRNEAIQYF--KDLGEEYKAKIIA 170

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E E   ++       LC G HV STG +    +     +     R
Sbjct: 171 DIPENEALSLYRQGDFEDLCRGPHVPSTGFLKAFKLTK---VAGAYWR 215


>gi|262278745|ref|ZP_06056530.1| metal-dependent hydrolase [Acinetobacter calcoaceticus RUH2202]
 gi|262259096|gb|EEY77829.1| metal-dependent hydrolase [Acinetobacter calcoaceticus RUH2202]
          Length = 209

 Score = 84.4 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 75/213 (35%), Gaps = 36/213 (16%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              +  V    TPF+ + GGQ  DTG        + +  V  + +G  +H+       + 
Sbjct: 20  EDGRFAVHLSATPFHPQGGGQPSDTGKI----AEVDVVHVAIE-QGEIIHYCT---QPVE 71

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
             ++    +D   RR  S  HSA HLL H +  + G    +  +   P   R        
Sbjct: 72  LGVAF-AQVDEAGRRYHSRLHSAGHLLGHVMH-LFGWQAVK--AQHWPHDARVQFIALDT 127

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
               + + +E +    I  NLP      N +           G                 
Sbjct: 128 AQQLDAQMLEQHCLQYIQANLPA-----NLQQHADGFREIGFGE---------------- 166

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              S+  CGGTHV++ G+I  + I S   I+ G
Sbjct: 167 --FSAFPCGGTHVAALGDIGFIEIQSYQ-IKKG 196


>gi|51893696|ref|YP_076387.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
 gi|73919833|sp|Q67LA3|SYT_SYMTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51857385|dbj|BAD41543.1| threonyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 651

 Score = 84.4 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      H++TH++  A+  +        G  +  +   +D    +P+T  +L+ I
Sbjct: 67  DEEGRE--VFRHTSTHIMAQAVKRLFPEAKLTVGPPL-ENSFYYDFDLPRPLTPEDLEKI 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  +  I+  + P+V + ++RE+A    A    G  Y   +     E E   +++     
Sbjct: 124 EAEMAKIVEADYPIVRQEVDREEAKRFFAER--GEDYKVLLVDKIPEDEVVSIYTQGEFT 181

Query: 692 ALCGGTHVSSTGEIMLLYIVSESS 715
            LC G H+ STG +    ++S + 
Sbjct: 182 DLCVGPHLPSTGRVKAFKLLSVAG 205


>gi|148360741|ref|YP_001251948.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|296106194|ref|YP_003617894.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282514|gb|ABQ56602.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby]
 gi|295648095|gb|ADG23942.1| Predicted metal-dependent hydrolase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 214

 Score = 84.4 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 31/213 (14%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           E++ ++T  ++ +GGQ  D     G    L++   +   +G  +++ + +   L     +
Sbjct: 25  EILLEKTIAFSFSGGQESDRAFING----LEVLSSR--IDGNLIYYTLPDDHNLAPNDVI 78

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            +TID+  R +L   H A  L+   ++    S + + G+ I+    R D   +  I+S  
Sbjct: 79  TITIDWPRRHRLMRLHFAAELILELVTRT--SMLEKVGAHISESKARIDFKANFNISSI- 135

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              + D  N II Q+L +     +                  ++ R   ++       + 
Sbjct: 136 FSQLLDEYNAIIRQDLVIHKGYHD----------------VTNQRRFWKIDG-----FAE 174

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             CGGTHV ST E+  +  +  S     I RIE
Sbjct: 175 VPCGGTHVHSTSEVGFIR-LKRSHPGKAIERIE 206


>gi|319794591|ref|YP_004156231.1| threonyL-tRNA synthetase [Variovorax paradoxus EPS]
 gi|315597054|gb|ADU38120.1| threonyl-tRNA synthetase [Variovorax paradoxus EPS]
          Length = 635

 Score = 84.4 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 20/195 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+++ +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSTAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDISYERPFTPEDMAAIEARMRELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRAEVIEVFKSR--GEDYKLRLVEDMPDEQAMGLYYHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  + +  +     +     R +A   Q  R +     +         K      + R+
Sbjct: 188 NTRFLKVFKLTK---LAGAYWRGDAKNEQLQRIYGTAWAD---------KKQLDQYIQRI 235

Query: 761 EEIWEE-YRKLQLIH 774
           EE  +  +RKL    
Sbjct: 236 EEAEKRDHRKLGKEL 250


>gi|225619668|ref|YP_002720925.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
 gi|225214487|gb|ACN83221.1| threonyl-tRNA synthetase [Brachyspira hyodysenteriae WA1]
          Length = 643

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +  +     G  I  DG  +D    KP T  +L  IED +  II 
Sbjct: 70  LRHSTSHLMAQAVRRLYPNTQVTIGPAI-KDGFYYDFDAEKPFTEEDLPKIEDEMKKIIK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGT 697
           +N+PVV ++MN+ +AI     A      N+  +V  +E  D    S         LC G 
Sbjct: 129 ENIPVVRKVMNKNEAIEYFKKA------NEPYKVEIIEGIDADTVSFYEQGDFIDLCRGP 182

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           HV STG +    ++S +            + RI   T   ++  L    +KLK    
Sbjct: 183 HVPSTGYLKAYKLMSVAGSYWRGDSNNKMLSRIYG-TAFESKESLDKYLKKLKEAKE 238


>gi|48477850|ref|YP_023556.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430498|gb|AAT43363.1| alanyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 237

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 8/213 (3%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           +  DQ+ F+    G+  D G    +G    I DV +  E I +  ++          ++ 
Sbjct: 28  MTVDQSVFFPTRAGEPNDKGTVTINGKDYVIVDVWEDGENIHL-ISLDTYPQDIAGQTVH 86

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
             ID+  R       SA  L+         +    N +    D    DV   + +   +L
Sbjct: 87  QKIDWDVRYNHMRYRSALFLISGIAYKFYNARCRMNQTY--EDNAWIDVYVDE-MNEEKL 143

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           + I+  +  II   + +    ++R++    S    L   K  +   +  +          
Sbjct: 144 EKIKTEMKKIIESGIDINASYISRDEFTKNSQLMNLSKDKMPEGDNIRIINISGL---PM 200

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
               G HV +T EI    I +  +     RR+ 
Sbjct: 201 QPDNGVHVKNTREIGDFEITTTMAKGKMERRLT 233


>gi|329577160|gb|EGG58630.1| TGS domain protein [Enterococcus faecalis TX1467]
          Length = 238

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIAEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|302408471|ref|XP_003002070.1| alanyl-tRNA synthetase domain-containing protein [Verticillium
           albo-atrum VaMs.102]
 gi|261358991|gb|EEY21419.1| alanyl-tRNA synthetase domain-containing protein [Verticillium
           albo-atrum VaMs.102]
          Length = 411

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 83/263 (31%), Gaps = 23/263 (8%)

Query: 528 LGDTGCAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
             D+G  I         + I  VQ++      H        L     +  T+D+  R   
Sbjct: 62  PSDSGTLIPLDDEAAEPIPIDFVQRQGLQCIYH----SPRPLAPGTRVRQTVDFDRRWDH 117

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+  HLL   +           G     +    D+   +  +  E+++I+D  N+II
Sbjct: 118 MQQHTGQHLLSAVMDKCDNLETLGWGMGKPGEANYVDL--PQKPSPEEIQAIQDRCNEII 175

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             ++P+   +   ++A           K    VRV+ +   D            H S   
Sbjct: 176 RDSMPITVDV--PQNAKDDTLPDDY-DKTKGVVRVIHIGDVDSNTCWR------HSSWPR 226

Query: 704 EIMLLY--IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV--SQGNVVGR 759
              LL   + S   +     R+    G RA          L S+   L    +   V+  
Sbjct: 227 RHTLLSWLLHSTQPVHVKHCRLFFTAGDRAIKLAANSIAALTSVGKVLSCGGTPDQVIAS 286

Query: 760 VEEIWEEYRKLQLIHAKRKLQLN 782
              + +   +L+    +   +L 
Sbjct: 287 TTRLRDVGAELRSKEKRLLSELA 309


>gi|291456785|ref|ZP_06596175.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291382062|gb|EFE89580.1| threonine--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 677

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  +T+D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLADGDTVEPITLDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             KP T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDKPFTPEDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWANKEDLKAYQTRLEEAAK 253


>gi|189424928|ref|YP_001952105.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
 gi|189421187|gb|ACD95585.1| threonyl-tRNA synthetase [Geobacter lovleyi SZ]
          Length = 646

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 98/260 (37%), Gaps = 31/260 (11%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L    ++ +  +        I HS +HL+  A+  +  +     G  +  +G  +D   
Sbjct: 62  PLADGDNVAIITEKSPEALEIIRHSTSHLMAQAVKELFPAAKVTIGPAV-ENGFYYDFDV 120

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           + P T  +L+ IE  + ++ A   P+  ++M+  +AIA      +G  Y   + +  +  
Sbjct: 121 AAPFTPEDLEKIEKRMAELAAAGQPLTRKVMSAAEAIAFFEQ--MGEPYKKEL-IEGIGA 177

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E   +++      LC G HV +T ++    ++S   I     R               ++
Sbjct: 178 ETVSIYTQGEFADLCRGPHVPNTNKLKAFKLLS---IAGAYWR------------GDEKN 222

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799
             L+ +     V +  +   +  + E  R+       RKL   ++  S +      F   
Sbjct: 223 RMLQRIYGTAFVDKKELEAYLHRLEEAKRRDH-----RKLGRELDLFSFNDEVGAGFAIW 277

Query: 800 IISEVDSKELKSVMDALQKK 819
                    L+++++  ++K
Sbjct: 278 HPKGA---MLRTLLEDFERK 294


>gi|134282011|ref|ZP_01768717.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
 gi|134246540|gb|EBA46628.1| threonyl-tRNA synthetase [Burkholderia pseudomallei 305]
          Length = 681

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 32/210 (15%)

Query: 574 TIDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ID+  R Q+           I HS  HLL HA+  I  +     G  I  DG  +D+ +
Sbjct: 62  VIDHDARLQIITPKDEEGLEIIRHSCAHLLGHAVKQIYPTAKMVIGPVID-DGFFYDIAY 120

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  ++ +IE  + ++IA +  V+ ++  R  AI +  +      Y  R+     + 
Sbjct: 121 ERAFTPEDVAAIEQRMKELIALDYNVIKKMTPRAKAIEAFHSR--EENYKLRLIADMPDV 178

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           +  G++       +C G HV +T  +    +   S                A      ++
Sbjct: 179 QAVGLYHHQEYVDMCRGPHVPNTRFLKHFRLTKVSG---------------AYWRGDAKN 223

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           E+L+ +       + ++   ++ + E  ++
Sbjct: 224 EQLQRIYGTAWADKKDLDAYIQRMEEAEKR 253


>gi|121610033|ref|YP_997840.1| threonyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2]
 gi|166225514|sp|A1WMG5|SYT_VEREI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121554673|gb|ABM58822.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Verminephrobacter eiseniae EF01-2]
          Length = 639

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +     +  +  L +  D  +     I HS  HLL +A+  +        G  
Sbjct: 38  GKIGDQLLDTSHRITADCRLSIITDKDDAGLELIRHSTAHLLAYAVKELFPEAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  +G  +D  + +P T  +L ++E  + ++ A++ PV+ R++ R+ AIA      LG  
Sbjct: 98  ID-NGFYYDFAYQRPFTPDDLVAMEKRMAELAAKDEPVLRRVLPRDAAIAYF--KGLGEH 154

Query: 672 YNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           Y   +       E+  ++       LC G HV STG++    ++    +     R
Sbjct: 155 YKAEIIAGIPGDEEVSLYREGSFEDLCRGPHVPSTGKLKFFKLMK---VAGAYWR 206


>gi|308513249|ref|YP_003474861.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|307346955|gb|ADC90325.2| threonine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 646

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 28/228 (12%)

Query: 558 AIVERGILRTEMSLVLTI----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             ++      +  + L I    D   R   +  H+A+H+L  A+  +        G  I 
Sbjct: 41  GELKDLRYVIDHDVHLNILTFDDEGGR--HAFRHTASHILAQAVKRLYPDTKLAIGPAI- 97

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D     P    EL+++E  +  I+ +NLP+ + ++ R++AIA       G  Y 
Sbjct: 98  ENGFYYDFDRDHPFNDEELRALEAEMKKIVKENLPIKSFLLPRDEAIALMEKR--GEPYK 155

Query: 674 DRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             +            +       LC G H++ST  +    + S   I     R       
Sbjct: 156 VELINDLPADAALSFYEQGEFVDLCAGPHLASTKPVKAFKLTS---IAGAYWR------- 205

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                   +++ L  +       Q ++   + ++ E  R+      K 
Sbjct: 206 -----GSEKNKMLTRIYGTAFPKQADLDDYLAKLEEAKRRDHRKLGKE 248


>gi|167907142|ref|ZP_02494347.1| threonyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177]
          Length = 670

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 32/210 (15%)

Query: 574 TIDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ID+  R Q+           I HS  HLL HA+  I  +     G  I  DG  +D+ +
Sbjct: 51  VIDHDARLQIITPKDEEGLEIIRHSCAHLLGHAVKQIYPTAKMVIGPVID-DGFFYDIAY 109

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  T  ++ +IE  + ++IA +  V+ ++  R  AI +  +      Y  R+     + 
Sbjct: 110 ERAFTPEDVAAIEQRMKELIALDYNVIKKMTPRAKAIEAFHSR--EENYKLRLIADMPDV 167

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           +  G++       +C G HV +T  +    +   S                A      ++
Sbjct: 168 QAVGLYHHQEYVDMCRGPHVPNTRFLKHFRLTKVSG---------------AYWRGDAKN 212

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           E+L+ +       + ++   ++ + E  ++
Sbjct: 213 EQLQRIYGTAWADKKDLDAYIQRMEEAEKR 242


>gi|118595089|ref|ZP_01552436.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
 gi|118440867|gb|EAV47494.1| Threonyl-tRNA synthetase, class IIa [Methylophilales bacterium
           HTCC2181]
          Length = 635

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+  +        G  I  +G  +D ++ +P T  +L  IE  + ++  
Sbjct: 71  IRHSTAHLLANAVKELFPEAQVTIGPVID-EGFYYDFSYKRPFTPDDLLVIEKKMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++LP+   IM R++AI     + LG  Y  ++     + E   ++       LC G HV 
Sbjct: 130 KDLPIERSIMPRKEAIQFF--SDLGEHYKSQIIESIPQSESVSLYKQGDFVDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           ST ++ +  ++    +     R                +E L+ +      ++  +   +
Sbjct: 188 STAKLKVFKLMK---VAGAYWR------------GDSNNEMLQRIYGTAWANKDELKEYL 232

Query: 761 EEIWEEYRKLQLIHAKR 777
             + E  ++      K+
Sbjct: 233 YRLEEAEKRDHRKLGKQ 249


>gi|149910913|ref|ZP_01899544.1| threonyl-tRNA synthetase [Moritella sp. PE36]
 gi|149805980|gb|EDM65964.1| threonyl-tRNA synthetase [Moritella sp. PE36]
          Length = 513

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  I   G  +DV   +PI+ A+L  +E ++N ++ 
Sbjct: 71  LRHSCAHLLGHAIKQLWPNTKMAIGPTID-KGFYYDVEMEEPISEADLAKLEKHMNKLVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV ++++ ++A  +  A   G  Y   +   ++  ++            +C G HV
Sbjct: 130 TNYQVVKKVVSWQEARDTFEAR--GETYKVAILDENIGKDETPALYYHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                     ++S   I     R                ++ L+ +       +  +   
Sbjct: 188 PVMKHCQHFKLMS---IAGAYWR------------GNSDNKMLQRIYGTAWTDKKELKAH 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +E + E  ++      K+
Sbjct: 233 IERLAEAEKRDHRKIGKQ 250


>gi|315641145|ref|ZP_07896224.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
 gi|315483153|gb|EFU73670.1| threonine--tRNA ligase [Enterococcus italicus DSM 15952]
          Length = 650

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 3/177 (1%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V+K   G      +     L  +  + +           + HS+ HL+ HA+  +     
Sbjct: 32  VKKALAGKVNGKLVDLTLPLEEDAKIEIVTPDHEDALPLLRHSSAHLMAHAMHRLYPGIH 91

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I             PIT+ +L +IE  +  +I +N P+   ++++E+A+   A+
Sbjct: 92  FGVGPAIDSGFYYDTDNGEHPITAEDLPAIEVEMMKVIKENHPIERMVLSKEEALELFAS 151

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                +    +    V           LC G HV STG I +  ++S   +     R
Sbjct: 152 DPYKVELITELPADEVITAYKQGDFVDLCRGPHVPSTGRIQVFKLLS---VAGAYWR 205


>gi|330977708|gb|EGH77611.1| threonyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 477

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ +  P T  ++ +IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYEPPFTPDDMAAIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           +T  +    +   S       R +A   Q  R +     +K +  A  L++ +  
Sbjct: 188 NTRFLKSFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADKKQLAAYILRIEKAE 239


>gi|194017082|ref|ZP_03055694.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010950|gb|EDW20520.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 646

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 24/241 (9%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS--H 604
           +K   G      I  R  L    ++ +  D  +     + HS  HLL  A+  + G   H
Sbjct: 36  KKALAGKLNGKEIDLRTPLLESGTIEIITDKSDEALDIMRHSTAHLLAQAIKRLYGKEHH 95

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V      +  +G  +DV     IT  +L  IE  +  II  NLP+    ++RE+A     
Sbjct: 96  VQFGVGPVIENGFYYDVDIDVAITPEDLPKIEKEMKKIINSNLPIERIEVSREEAKKRFE 155

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A  +G +    +     E E   ++       LC G H+SSTG+I    ++S        
Sbjct: 156 A--IGDQLKLELLEAIPEGEAVTIYEQGEFFDLCRGIHLSSTGKIKEFKLLS-------- 205

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                + G  A       ++ L+ +      S+ ++   +  + EE ++       ++L+
Sbjct: 206 -----LAG--AYWRGDSNNQMLQRIYGTAFFSKDDLNEHL-RLLEEAKERDHRKLGKELK 257

Query: 781 L 781
           L
Sbjct: 258 L 258


>gi|300870146|ref|YP_003785017.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
 gi|300687845|gb|ADK30516.1| threonyl-tRNA synthetase [Brachyspira pilosicoli 95/1000]
          Length = 643

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 23/176 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +  +     G  I  DG  +D    KP T  +L  IED +  I+ 
Sbjct: 70  LRHSTSHLMAQAVRRLYPNTQVTIGPAI-KDGFYYDFDAEKPFTEEDLPKIEDEMKKIVK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGT 697
           +N+PVV ++M +++AI     A      N+  +V  +E  D    S         LC G 
Sbjct: 129 ENIPVVRKVMKKDEAIEYFKKA------NEPYKVEIIEGIDADTVSFYEQGDFIDLCRGP 182

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           HV STG I    ++S +            + RI       + A    + + ++ K 
Sbjct: 183 HVPSTGYIKSYKLMSVAGSYWRGDSNNKMLSRIYGTAFESKEALDKYLKKLKEAKE 238


>gi|260463880|ref|ZP_05812076.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259030255|gb|EEW31535.1| threonyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 658

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 11/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAIDGTVRDLSDPLGKSGKVEIITRDDARALELIRHDTAHVLAEAVQELWPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +   IE  + +IIA+N P    + +RE A    A  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTPDDFPVIEKKMREIIARNKPFTKEVWSREQAKKVFADK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G +Y   +     E +D  +++      LC G H++STG+I     ++    +     
Sbjct: 155 --GERYKLELIDAIPEDQDLKIYAQGDWFDLCRGPHMASTGQIGNAFKLMK---VAGAYW 209

Query: 722 R 722
           R
Sbjct: 210 R 210


>gi|222151594|ref|YP_002560750.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
 gi|222120719|dbj|BAH18054.1| threonyl-tRNA synthetase [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 31/263 (11%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I  G+R      +K   G F    +     L T+  + +         
Sbjct: 17  ESGVTTEDIAGSISPGLR------KKALAGKFNGQMVDLSTALETDGDIEIITPESPEGI 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HS  HL+  AL  + G  V      +  +G  +D+     I+S +L  IE  +  I
Sbjct: 71  EVLRHSTAHLMAQALKRMYGD-VHFGVGPVIEEGFYYDIDTEHKISSEDLPEIEKTMRQI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+ +  R+++RE+A    A       Y   +     E E   ++S      LC G H
Sbjct: 130 VGENIKIERRVVSREEAKKIFA----DDPYKMELIDAIPEDEHVTIYSQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V ST +I    ++S         R +A      R +     +K K+L   LK        
Sbjct: 186 VPSTAKIKEFKLLST---AGAYWRGDADNKMLQRIYGTAFFDK-KALKEHLK-------- 233

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL 781
               I EE ++       ++L+L
Sbjct: 234 ----ILEERKERDHRKIGKELEL 252


>gi|146307004|ref|YP_001187469.1| threonyl-tRNA synthetase [Pseudomonas mendocina ymp]
 gi|166225482|sp|A4XTS1|SYT_PSEMY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145575205|gb|ABP84737.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPNAKMVIGPVID-EGFYYDIAIDRPFTPDDMAAIEKRMAELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    +   G +Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKMTPRAEVIELFRSR--GEEYKLRLIDDMPDEKAMGLYFHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +     I     R               ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKAFKLT---RISGAYWR------------GDSKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 233 QRIEEAEKRDHRRIGKQ 249


>gi|330860518|emb|CBX70821.1| hypothetical protein YEW_DE13360 [Yersinia enterocolitica W22703]
          Length = 195

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 81/223 (36%), Gaps = 37/223 (16%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
             +++  A  G++  V+   T F+ + GGQ  DTG   G+   L++   Q++   I    
Sbjct: 2   DVDVLSCAPDGEEFAVILLATIFHPQGGGQPSDTGYI-GNNQVLRVVQQQEQL--IHYLT 58

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             +  G      +    +D + R   +  HSA HL+ +      G       +   P   
Sbjct: 59  KSIAPG------TYYARVDNERRLLNTRMHSAGHLIGNIG---EGYGWRPVKAHHWPGEG 109

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           R     ++     ++  I+  +   I Q+LP    +                     +  
Sbjct: 110 RVSFKRTQNPQVLDIDIIQAALEQFIRQDLPRQISV---------------------QGN 148

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
              V + +   +    CGGTHV S  E+  + + S S  + G+
Sbjct: 149 FREVGFGELSAY---ACGGTHVGSLHELGKVTVQSISE-KKGV 187


>gi|157693298|ref|YP_001487760.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157682056|gb|ABV63200.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 646

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 24/241 (9%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS--H 604
           +K   G      I  R  L    ++ +  D  +     + HS  HLL  A+  + G   H
Sbjct: 36  KKALAGKLNGKEIDLRTPLLESGTIEIITDKSDEALDIMRHSTAHLLAQAIKRLYGKEHH 95

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
           V      +  +G  +DV     IT  +L  IE  +  II  NLP+    ++REDA     
Sbjct: 96  VQFGVGPVIENGFYYDVDIDVAITPEDLPKIEKEMKKIINSNLPIERIEVSREDAKKRFE 155

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           A  +G +    +     E E   ++       LC G H+ STG+I    ++S        
Sbjct: 156 A--IGDQLKLELLEAIPEGEAVTIYEQGEFFDLCRGIHLPSTGKIKEFKLLS-------- 205

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780
                + G  A       ++ L+ +      S+ ++   +  + EE ++       ++L+
Sbjct: 206 -----LAG--AYWRGDSNNQMLQRIYGTAFFSKDDLNEHL-RLLEEAKERDHRKLGKELK 257

Query: 781 L 781
           L
Sbjct: 258 L 258


>gi|77458158|ref|YP_347663.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
 gi|123758422|sp|Q3KEY2|SYT_PSEPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77382161|gb|ABA73674.1| putative threonyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1]
          Length = 640

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +IE  ++ +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-EGFYYDIAFERPFTPDDMAAIEQRMHQLID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
               V+ ++  R + I    A   G  Y  R+       +  G++       +C G HV 
Sbjct: 130 TEYDVIKKVTPRAEVIEVFKAR--GEDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKSFKLTKLSG---------------AYWRGDAKNEQLQRVYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      KR
Sbjct: 233 QRIEEAEKRDHRKIGKR 249


>gi|54295556|ref|YP_127971.1| threonyl tRNA synthetase [Legionella pneumophila str. Lens]
 gi|73919803|sp|Q5WT82|SYT_LEGPL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53755388|emb|CAH16884.1| Threonyl tRNA synthetase [Legionella pneumophila str. Lens]
          Length = 637

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +    +++ + SL++  +        I HS  HLL  A+  +  S     G  I  DG  
Sbjct: 45  VDTSYLIKEDCSLIIVTEKHEDSLEVIRHSTAHLLAQAVKALFPSAQVTIGPVI-EDGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D    +  T  +L  IE  ++++   NL +  R + R +AI       LG +Y  ++  
Sbjct: 104 YDFAFERSFTPDDLSLIEVKMHELAKANLSITRRELPRNEAIQYF--KGLGEEYKAKIIA 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              E E   ++       LC G HV STG +    +     +     R
Sbjct: 162 DIPENESLSLYRQGDFEDLCRGPHVPSTGFLKAFKLTK---VAGAYWR 206


>gi|256831207|ref|YP_003159935.1| Threonyl/alanyl tRNA synthetase SAD [Desulfomicrobium baculatum DSM
           4028]
 gi|256580383|gb|ACU91519.1| Threonyl/alanyl tRNA synthetase SAD [Desulfomicrobium baculatum DSM
           4028]
          Length = 147

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+L+  +  +       + + + PD  + D  +++ +T AE + +E  VN +IA
Sbjct: 8   RMHTAEHILNQTMDRLFACGRCFS-AHVNPDKAKCDYHYNRDLTEAEARDVEARVNAVIA 66

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +LPV    M R +A        L    ++ +R++ +     G + +  C G HV  T  
Sbjct: 67  ADLPVFAENMARSEAQTLFNLERLPNDASEELRIIRI-----GDYDACPCIGEHVDQTSA 121

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQ 729
           + +  + +  S   G+ R+    G+
Sbjct: 122 LGVFRLTTH-SFENGVLRLRFKLGK 145


>gi|209552296|ref|YP_002284211.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539408|gb|ACI59340.1| alanyl-tRNA synthetase class IIc [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 292

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 106/321 (33%), Gaps = 85/321 (26%)

Query: 9   TTFLEFFQKNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66
             + +F    G     +PS  + P  D T +F ++GM  +K +F   +      V   Q 
Sbjct: 14  QHYGDFCLSKGIDFTRIPS--VRPH-DNTTLFCSAGMQQYKPLF--SDPSHIGTVANSQA 68

Query: 67  CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126
           C+R G    DL+ +G    H   F MLG FSF       AI    + L     L     +
Sbjct: 69  CLRMG----DLEEIG-DGTHLLHFTMLGLFSFREMTIGNAIDFWLEFLA-TLGLVPD--H 120

Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186
           +T++ +       W  +      ++  I   +  WS       G C+E F+  G      
Sbjct: 121 VTIHPDR---LMEWTPLYR---GRVAIIADPECTWSDGSIR--GYCTE-FYKHG------ 165

Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
                      +EI N+V                   ID G G ER+  ++     +   
Sbjct: 166 -----------VEIGNIV------NPLGT-------CIDVGFGAERLDMIVNGTPQD--- 198

Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306
           D  + L +    +    Y                           P N+ +GYVLR+++R
Sbjct: 199 DALETLCETVATIVESGY--------------------------RPGNKEQGYVLRKLLR 232

Query: 307 RAMCYARLLGYTEPLMMHLLP 327
           R       L    P     + 
Sbjct: 233 RIHKMGGTL--DHPFFTEEVE 251


>gi|73748565|ref|YP_307804.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|289432591|ref|YP_003462464.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
 gi|123732511|sp|Q3ZXB5|SYT_DEHSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73660281|emb|CAI82888.1| threonyl-tRNA synthetase [Dehalococcoides sp. CBDB1]
 gi|288946311|gb|ADC74008.1| threonyl-tRNA synthetase [Dehalococcoides sp. GT]
          Length = 582

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 19/235 (8%)

Query: 574 TIDYQN---RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ID        ++   HSA H++  A+ ++        G  I   G  +D    + +T  
Sbjct: 4   QIDESKPISDLEIMR-HSAAHIMAEAVLSMFPEAKLGIGPAIDT-GFYYDFDLPRTLTPE 61

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +N ++  NLP     M++++A    A      +  + +   +V     G   
Sbjct: 62  DLPEIETRMNQLVKSNLPFRREEMSKDEARKLFANQPYKLELLNDITDETVSIYRQGNF- 120

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC G HV+ T ++    ++S   I     R     G   R  L      +   A   K
Sbjct: 121 CDLCRGPHVNYTSKVKAFKLLS---IAGAYWR-----GDEKRPMLQR----IYGAAFLDK 168

Query: 751 VSQGNVVGRVEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            S    +  +EE  +  +RKL        L   +     + + +   + H+I E 
Sbjct: 169 ASLAEYLNMLEEAAKRDHRKLGKELELFSLHQEIGGGLVNWLPNGAIVRHLIEEF 223


>gi|312128091|ref|YP_003992965.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778110|gb|ADQ07596.1| threonyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108]
          Length = 639

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II 
Sbjct: 73  YWHTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDVEESITMELLEKIEEEMQKIIK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    ++RE+A+        G  Y   +     E E    +       LC G H+ 
Sbjct: 133 EDLKIERFELSREEAVK--LMQEKGENYKVELINDIPEGETISFYRQGEFVDLCTGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++S   +     R
Sbjct: 191 STGRVKAFKLLS---VAGAYWR 209


>gi|329895719|ref|ZP_08271123.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
 gi|328922195|gb|EGG29550.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC3088]
          Length = 641

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 11/203 (5%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G+     +    ++  + SL +  D  +     I HS  HLL  A+  +        G  
Sbjct: 38  GVVDGKEVDTSFVIENDASLAIITDRDDAGIEIIRHSTAHLLAMAVQELYPGTQVTIGPT 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  DG  +D       T+ +L+ IE  + +I  ++L V    ++RE AI       +G  
Sbjct: 98  I-EDGFYYDFATGHRFTTEDLEKIEVRMAEIADRDLTVERLEVSREHAIEEF--RNMGEN 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y  ++       E   V+       LC G HV STG++    +     +     R ++  
Sbjct: 155 YKVQIIEDLPAGEIISVYKQGPWMDLCRGPHVPSTGKLQAFKLTK---VAGAYWRGDSKN 211

Query: 728 GQRARSHLMGQDEKLKSLASFLK 750
               R +      K K L  +L 
Sbjct: 212 EMLQRVYGTAWANK-KQLKQYLN 233


>gi|190891876|ref|YP_001978418.1| threonyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
 gi|238692487|sp|B3PNV4|SYT_RHIE6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190697155|gb|ACE91240.1| threonyl-tRNA synthetase protein [Rhizobium etli CIAT 652]
          Length = 668

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  KDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEPFTPDDLPKIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P   +I +RE A    AA   G +Y   +     E +D  ++       
Sbjct: 124 KKMKEIIARNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG++     ++    +     R
Sbjct: 182 LCRGPHMASTGQVGTAFKLMK---VAGAYWR 209


>gi|91070150|gb|ABE11072.1| threonyl-tRNA synthetase [uncultured Prochlorococcus marinus clone
           HF10-11A3]
          Length = 638

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +V+           I HS  HL+ HA+  I        G  I  DG  +D+  
Sbjct: 50  PINKDSKVVIITSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPVI-EDGFYYDIFS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L  IE+ +N +I  N  V    +++E+AI +         +  R+     E 
Sbjct: 109 EYRFTPEDLIKIENRINKLIKTNYDVEILQVSKEEAIKTFKER--DETFKLRIIEEIPEQ 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
               ++       +C G HV +T  +    ++  S       R               ++
Sbjct: 167 GLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGS---YWR------------GNSEN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +       +  +   +  I E  ++      K+
Sbjct: 212 ESLQRIYGTAWAKEKELKDYLTRIEEAEKRDHRKLGKK 249


>gi|147669325|ref|YP_001214143.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
 gi|189083604|sp|A5FRB3|SYT_DEHSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146270273|gb|ABQ17265.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Dehalococcoides
           sp. BAV1]
          Length = 582

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 19/235 (8%)

Query: 574 TIDYQN---RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ID        ++   HSA H++  A+ ++        G  I   G  +D    + +T  
Sbjct: 4   QIDESKPISDLEIMR-HSAAHIMAEAVLSMFPEAKLGIGPAIDT-GFYYDFDLPRTLTPE 61

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +N ++  NLP     M++++A    A      +  + +   +V     G   
Sbjct: 62  DLPEIETRMNQLVKSNLPFRREEMSKDEARKLFANQPYKLELLNDITDETVSIYRQGNF- 120

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC G HV+ T ++    ++S   I     R     G   R  L      +   A   K
Sbjct: 121 CDLCRGPHVNYTSKVKAFKLLS---IAGAYWR-----GDEKRPMLQR----IYGAAFLDK 168

Query: 751 VSQGNVVGRVEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            S    +  +EE  +  +RKL        L   +     + + +   + H+I E 
Sbjct: 169 ASLAEYLNMLEEAAKRDHRKLGKELELFSLHQEIGGGLVNWLPNGAIVRHLIEEF 223


>gi|327188321|gb|EGE55539.1| threonyl-tRNA synthetase protein [Rhizobium etli CNPAF512]
          Length = 668

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  KDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEPFTPDDLPKIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P   +I +RE A    AA   G +Y   +     E +D  ++       
Sbjct: 124 KKMKEIIARNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG++     ++    +     R
Sbjct: 182 LCRGPHMASTGQVGTAFKLMK---VAGAYWR 209


>gi|86357812|ref|YP_469704.1| threonyl-tRNA synthetase [Rhizobium etli CFN 42]
 gi|123765783|sp|Q2K859|SYT_RHIEC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|86281914|gb|ABC90977.1| threonyl-tRNA synthetase protein [Rhizobium etli CFN 42]
          Length = 668

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  +
Sbjct: 68  RALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEPFTPDDLPKIEKKM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA+N P   +I +RE A    AA   G +Y   +     E +D  ++       LC 
Sbjct: 127 KEIIARNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGEWFDLCR 184

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG++     ++    +     R
Sbjct: 185 GPHMASTGQVGTAFKLMK---VAGAYWR 209


>gi|294792093|ref|ZP_06757241.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
 gi|294457323|gb|EFG25685.1| threonine--tRNA ligase [Veillonella sp. 6_1_27]
          Length = 641

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +      ++  + ++ H+A+H+L  A+  +        G  I   G  +D+
Sbjct: 55  REELVDGSEVAFLTFEEDGGKHTLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDI 113

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M R++AI    A      Y   +     
Sbjct: 114 DMEHTLTPEDLGKIEKEMSRIVKENLPITKSVMPRQEAIEFFKAK--NEDYKVELIQDLP 171

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      +S      LC G HV+STG++    +    SI     R
Sbjct: 172 EDAVISCYSQGDFIDLCAGPHVASTGKVKAFKL---QSIAGAYWR 213


>gi|312959896|ref|ZP_07774411.1| metal-dependent hydrolase [Pseudomonas fluorescens WH6]
 gi|311285843|gb|EFQ64409.1| metal-dependent hydrolase [Pseudomonas fluorescens WH6]
          Length = 208

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 38/229 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +  + E++       +  VV   T F+ + GGQ  DTG   GD   L++   Q+    + 
Sbjct: 12  LTAELEVLSCTPHEGQFAVVLQSTIFHPQGGGQPFDTGTL-GDSNVLRVI--QEADRVVH 68

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                V+ G +         +D Q R   +  HSA H L   +  ILG       +   P
Sbjct: 69  YLDRPVQPGPIS------ARVDPQRRALHTRLHSAGH-LIGNVGEILG--WMPIKAHHWP 119

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              +      +   + + ++I+  +N  IA + P   R M  ED                
Sbjct: 120 GEGKITFIRGETAQAMDAEAIQQQINQWIAADCP---RHMTLEDGSREVGF--------- 167

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI--VSESSIRAGIR 721
                       G   +  CGGTHV + GE+  + I  +SE      +R
Sbjct: 168 ------------GDLPAYACGGTHVQTLGELGRVTILALSEKKGALSVR 204


>gi|123968188|ref|YP_001009046.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
 gi|166225480|sp|A2BQ78|SYT_PROMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123198298|gb|ABM69939.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. AS9601]
          Length = 638

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +V+           I HS  HL+ HA+  I        G  I  DG  +D+  
Sbjct: 50  PINKDSKVVIITSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPVI-EDGFYYDIFS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L  IE+ +N +I  N  V    +++E+AI +         +  R+     E 
Sbjct: 109 EYRFTPEDLIKIENRINQLIKTNYDVEILQVSKEEAIKTFKER--DETFKLRIIEEIPEE 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
               ++       +C G HV +T  +    ++  S       R               ++
Sbjct: 167 GLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGS---YWR------------GNSEN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +       +  +   +  I E  ++      K+
Sbjct: 212 ESLQRIYGTAWAKEKELKDYLTRIEEAEKRDHRKLGKK 249


>gi|296454199|ref|YP_003661342.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183630|gb|ADH00512.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 677

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + +D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLNEGDTVDPIALDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDQPFTPDDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|150396275|ref|YP_001326742.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
 gi|166225503|sp|A6U8C7|SYT_SINMW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150027790|gb|ABR59907.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419]
          Length = 660

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P    + +R+ A      A+ G  Y   +     E +D  ++       
Sbjct: 124 KRMREIIARNKPFTKEVWSRDKAKE--VFAVKGESYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG+I     ++    +     R
Sbjct: 182 LCRGPHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|319783887|ref|YP_004143363.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169775|gb|ADV13313.1| threonyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 658

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 11/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H A H+L  A+  +      
Sbjct: 36  KKAVAYAIDGTVRDLSDPLGKSGKVEIVTRDDPRALELIRHDAAHVLAEAVQELWPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +   IE  + +II++N P    + +R+ A    A  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTPDDFPVIEKKMREIISRNKPFTKEVWSRDKAKKVFADK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G +Y   +     E +D  +++      LC G H++STG+I     ++    +     
Sbjct: 155 --GERYKLELIDAIPEDQDLKIYAQGDWFDLCRGPHMASTGQIGNAFKLMK---VAGAYW 209

Query: 722 R 722
           R
Sbjct: 210 R 210


>gi|270308068|ref|YP_003330126.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
 gi|270153960|gb|ACZ61798.1| threonyl-tRNA synthetase (thrS) [Dehalococcoides sp. VS]
          Length = 582

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 87/235 (37%), Gaps = 19/235 (8%)

Query: 574 TIDYQN---RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
            ID        ++   HSA H++  A+ ++        G  I   G  +D    + +T  
Sbjct: 4   QIDESKPISDLEIMR-HSAAHIMAEAVLSMFPEAKLGIGPAIDT-GFYYDFDLPRTLTPE 61

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +N ++  NLP     M++++A    A      +  + +   +V     G   
Sbjct: 62  DLPEIETRMNQLVKANLPFRREEMSKDEARKLFADQPYKLELLNDIPDETVSIYRQGNF- 120

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC G HV+ T ++    ++S   I     R     G   R  L      +   A   K
Sbjct: 121 CDLCRGPHVNYTSKVKAFKLLS---IAGAYWR-----GDEKRPMLQR----IYGAAFLDK 168

Query: 751 VSQGNVVGRVEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            S  + +  +EE  +  +RKL        L   +     + + +   + H+I E 
Sbjct: 169 ASLADYLNMIEEAAKRDHRKLGKELELFSLHQEIGGGLVNWLPNGATIRHLIEEF 223


>gi|86608959|ref|YP_477721.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557501|gb|ABD02458.1| threonyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 603

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H+L  A+  +        G   T  G  +D  H +P T  +L  I+  +  II
Sbjct: 28  RIRHTTSHVLAMAVQKLFPKAQVTIGPT-TDYGFYYDFDHPEPFTPEDLDRIKKEMQAII 86

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-----SSALCGGTH 698
            + LPV+   ++RE+A     A  LG  Y   +     E E   ++        LC G H
Sbjct: 87  KKGLPVIREEVSREEARRRIEA--LGEPYKLEILDSIPEGEVISIYHLGNEWWDLCAGPH 144

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V +T E+         S+     R
Sbjct: 145 VENTQELNP-KAFDLLSVAGAYWR 167


>gi|319892730|ref|YP_004149605.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|317162426|gb|ADV05969.1| Threonyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03]
 gi|323464237|gb|ADX76390.1| threonyl-tRNA synthetase [Staphylococcus pseudintermedius ED99]
          Length = 645

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 15/197 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    +   +I  G+R      +K   G F    +     L  + ++ +     +   
Sbjct: 17  EKGTTTEEIAQSISPGLR------KKAVAGKFNQQLVDLTRPLEEDGAIEIITPGSDEAL 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HS  HL+  AL  + G      G  I   G  +D    + ++S + + IE  +  I
Sbjct: 71  EVLRHSTAHLMAQALKRLYGDVHFGVGPVID-GGFYYDFDMEEKVSSDDFEKIEKTMKQI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I +N  V  ++++R++A A  A       Y   +     + E   ++S      LC G H
Sbjct: 130 IEENHKVERQVVSRDEAKAFFA----NDPYKLELIEAIPQDEQVTLYSQGEFTDLCRGVH 185

Query: 699 VSSTGEIMLLYIVSESS 715
           V ST +I    ++S + 
Sbjct: 186 VPSTSKIKAFKLLSTAG 202


>gi|294670480|ref|ZP_06735360.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307759|gb|EFE49002.1| hypothetical protein NEIELOOT_02198 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 637

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  + ++ +           I HS  HL+ HA+  +  +     G
Sbjct: 36  VAGKVNGKLVDACDPITEDSTVQIITPKDQEGVEIIRHSCAHLVGHAVKQLYPNAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R + I        G
Sbjct: 96  PVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIAQDYDVIKIMTPRAETIKIFQDR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 153 EEYKLRLIEDMPEVEAMGMYYHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 199

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 200 LAG--AYWRGDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|330951866|gb|EGH52126.1| threonyl-tRNA synthetase [Pseudomonas syringae Cit 7]
          Length = 640

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 10/175 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+ + +P T  ++  IE  +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVID-DGFYYDIAYERPFTPDDMAGIEQRMQQLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    A      Y  R+       +  G++       +C G HV 
Sbjct: 130 KDYDVIKKVTPRAEVIEVFTARH--EDYKLRLVEDMPNEQAMGLYYHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           +T  +    +   S       R +A   Q  R +     +K +  A  L++ +  
Sbjct: 188 NTRFLKSFKLTKLSG---AYWRGDAKNEQLQRVYGTAWADKKQLAAYILRIEEAE 239


>gi|315026573|gb|EFT38505.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2137]
          Length = 660

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HSA HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSAAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|313892956|ref|ZP_07826533.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442309|gb|EFR60724.1| threonine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 636

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +      ++  + ++ H+A+H+L  A+  +        G  I   G  +D+
Sbjct: 50  REELVDGSEVAFLTFEEDGGKHTLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDI 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M+R++AI    +      Y   +     
Sbjct: 109 DMEHTLTPEDLGKIEKEMSRIVKENLPITKSVMSRQEAIEFFKSK--NEDYKVELIQDLP 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      +S      LC G HV+STG++    +    SI     R
Sbjct: 167 EDAVISCYSQGDFIDLCAGPHVASTGKVKAFKL---QSIAGAYWR 208


>gi|307286857|ref|ZP_07566939.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|306502072|gb|EFM71358.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0109]
 gi|315156485|gb|EFU00502.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0043]
 gi|315166285|gb|EFU10302.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1302]
 gi|315169145|gb|EFU13162.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1341]
          Length = 660

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HSA HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSAAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|315282482|ref|ZP_07870886.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
 gi|313613866|gb|EFR87606.1| threonyl-tRNA synthetase [Listeria marthii FSL S4-120]
          Length = 640

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++      +K   G F    +     +  + ++ +         
Sbjct: 14  EPGVSTADIAASISPGLK------KKALAGKFNGELLDLVTPIHEDGAIEIVTPDHEDAL 67

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 68  GILRHSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G  Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDHYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|269925242|ref|YP_003321865.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269788902|gb|ACZ41043.1| threonyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 596

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 4/139 (2%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA H++  A+  +        G  I  +G  +D    +PIT  +   IE+ +  +I
Sbjct: 26  TMRHSAAHVMAAAVLQMFPDAKFGIGPAI-ENGFYYDFELPRPITPEDFPEIEERMRQLI 84

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            ++ P +   ++R+ A           +  D +   +V       H + LC G HV STG
Sbjct: 85  EEDHPFIREEISRQQAKEMFRDQPYKLEIIDDLPEDAVISIYKMAHFTDLCRGPHVESTG 144

Query: 704 EIMLLYIVSESSIRAGIRR 722
           +I    ++S   + +   R
Sbjct: 145 KIGPFKLLS---VASAYWR 160


>gi|16079947|ref|NP_390773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221310836|ref|ZP_03592683.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221315161|ref|ZP_03596966.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221324361|ref|ZP_03605655.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|135175|sp|P18255|SYT1_BACSU RecName: Full=Threonyl-tRNA synthetase 1; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|143766|gb|AAA22864.1| (thrSv) (EC 6.1.1.3) [Bacillus subtilis]
 gi|1769999|emb|CAA99608.1| threonyl-tRNA-synthetase [Bacillus subtilis]
 gi|2293284|gb|AAC00362.1| threonine tRNA synthetase [Bacillus subtilis]
 gi|2635360|emb|CAB14855.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 643

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      I  R  +  + ++ +  +        
Sbjct: 20  GTTTEDIAASISPGLK------KKSLAGKLNGKEIDLRTPINEDGTVEIITEGSEEGLQI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL  A+  I    V      +  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSAAHLLAQAIKRIY-KDVKFGVGPVIENGFYYDVEMDEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            NLP+V + ++RE+A A    A +G      +     E E   ++       LC G HV 
Sbjct: 133 ANLPIVRKEVSREEAKARF--AEIGDDLKLELLDAIPEGETVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG+I    ++S             + G  A      +++ L+ +       + ++   +
Sbjct: 191 STGKIKEFKLLS-------------LAG--AYWRGDSKNQMLQRVYGTAFFKKADLEEHL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
             + EE ++       ++L+L
Sbjct: 236 -RMLEEAKERDHRKLGKELKL 255


>gi|83590594|ref|YP_430603.1| threonyl-tRNA synthetase [Moorella thermoacetica ATCC 39073]
 gi|83573508|gb|ABC20060.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Moorella
           thermoacetica ATCC 39073]
          Length = 633

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 10/145 (6%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L+  H+A H+L  A+  +        G  IT DG  +D       T  +L ++E  +  
Sbjct: 67  RLAYRHTAAHVLAQAVKHLFPGTELGIGPAIT-DGFYYDFDSEHKFTPEDLTALEAEMQR 125

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           II  +LP+  R ++RE+A+       LG  Y   +     E      +       LC G 
Sbjct: 126 IIKADLPLERREVSREEALELF--RRLGEPYKVELINDLPEGVPISTYRQGDFIDLCAGP 183

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           H+ S      L  V  +S+     R
Sbjct: 184 HLPS---TGYLKAVKLTSLAGAYWR 205


>gi|126695961|ref|YP_001090847.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
 gi|166225476|sp|A3PBX1|SYT_PROM0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126543004|gb|ABO17246.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301]
          Length = 638

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +V+           I HS  HL+ HA+  I        G  I  DG  +D+  
Sbjct: 50  PINKDSKVVIITSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPVI-EDGFYYDIFS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L  IE+ +N +I  N  V    +++E+AI +         +  R+     E 
Sbjct: 109 EYRFTPEDLIKIENRINKLIKTNYDVEILQVSKEEAIKTFKER--DETFKLRIIEEIPEE 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
               ++       +C G HV +T  +    ++  S       R               ++
Sbjct: 167 GLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGS---YWR------------GNSEN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +       +  +   +  I E  ++      K+
Sbjct: 212 ESLQRIYGTAWAKEKELKDYLTRIEEAEKRDHRKLGKK 249


>gi|326562407|gb|EGE12726.1| threonyl-tRNA synthetase [Moraxella catarrhalis 7169]
 gi|326569116|gb|EGE19178.1| threonyl-tRNA synthetase [Moraxella catarrhalis BC1]
          Length = 639

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 78/204 (38%), Gaps = 11/204 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     + T+ ++ +     +     I HS  HLL HA+  +        G
Sbjct: 36  VAGRVNGRLVDASDPITTDATVEIITPKDDAGVEIIRHSTAHLLGHAVKQLYPDVKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  DG  +D+   +P T  ++  IE  +  +I Q+  V+ ++  R++ I +      G
Sbjct: 96  PVID-DGFYYDIYSERPFTLGDMAKIEARMIQLINQDYDVIKKMTPRDEVIKTFLER--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
             Y  R+     +    G++       +C G HV +T  +    +   S       R +A
Sbjct: 153 ETYKLRLVEDMPDETHMGLYHHQEYIDMCRGPHVPNTRFLKAFKLTKMSG---AYWRGDA 209

Query: 726 ITGQRARSHLMGQDEKLKSLASFL 749
              Q  R +     +K K L ++L
Sbjct: 210 KNEQLQRIYGTAWADK-KQLKAYL 232


>gi|119485182|ref|ZP_01619567.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
 gi|119457410|gb|EAW38535.1| threonyl-tRNA synthetase [Lyngbya sp. PCC 8106]
          Length = 608

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 31/242 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II 
Sbjct: 30  IRHTASHIMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEKDLKAIQKEMAKIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           + LPVV   ++RE+A        LG  Y           +++ Y   G     LC G HV
Sbjct: 89  RKLPVVREELSREEAKRR--IEELGEPYKLEILEGLEDPITIYYLGDGWWD--LCAGPHV 144

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T +I     +   S+     R     G   ++ L             L          
Sbjct: 145 ENTADIHP-KAIELESLAGAYWR-----GDETKAQLQRIYGTAWETPEQL---------- 188

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                 EY++ +    KR  +   ++L     ADV      +       L+S ++   KK
Sbjct: 189 -----AEYKRRKEEALKRDHRKLGKELGLFIFADVVGPGLPLWTPKGTVLRSTLEDFLKK 243

Query: 820 IQ 821
            Q
Sbjct: 244 EQ 245


>gi|288576250|ref|ZP_05978464.2| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
 gi|288565905|gb|EFC87465.1| threonine--tRNA ligase [Neisseria mucosa ATCC 25996]
          Length = 643

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  + ++ +           I HS  HL+ HA+  +  +     G
Sbjct: 42  VAGKVNGKLVDACDPITEDSAVQIITPKDQEGVEIIRHSCAHLVGHAVKQLYPNAKMVIG 101

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R + I        G
Sbjct: 102 PVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIAQDYDVIKIMTPRAETIKIFQDR--G 158

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 159 EEYKLRLIDDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 205

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 206 LAG--AYWRGDSNNEMLQRIYGTAWATKEELKAYIQRIEEAEKRDHRKLGKQ 255


>gi|328951014|ref|YP_004368349.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
 gi|328451338|gb|AEB12239.1| threonyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884]
          Length = 647

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 15/169 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST------ILGSHVSQNGSCITPDGL 617
            L     + +        Q    H+  H+L  A+             V      +  +G 
Sbjct: 50  PLPEGAEVRIITRKDPEYQHLFRHTLAHVLAQAVKEFFQEKGYDPDAVKLGVGPVIENGF 109

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +D+   +PI+ ++L +IE  ++ I+ +NLP+   +++RE+A+A          Y   + 
Sbjct: 110 YYDIDAPEPISDSDLPAIEKRMHHILKRNLPLRRYVLSREEALARYRGK---DPYKTELI 166

Query: 678 VVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               E E+   +       LC G HV STG+I        + +     R
Sbjct: 167 QDLPEDEEISFYEQEGFTDLCRGPHVPSTGKIPPF--FKLTHVAGAYWR 213


>gi|325982725|ref|YP_004295127.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
 gi|325532244|gb|ADZ26965.1| threonyl-tRNA synthetase [Nitrosomonas sp. AL212]
          Length = 635

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 11/168 (6%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L  + S +  I  ++   L I  HS  HLL HA+  +        G  I  DG  
Sbjct: 45  VDLSYLVEDDSDLAIITEKDDEGLEIIRHSCAHLLAHAVKELFPEAQVTIGPVID-DGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D ++ +  T  +L +IE  + +I  ++L +  +I   E A A       G  Y  ++  
Sbjct: 104 YDFSYKRSFTFEDLTAIEKRMIEISKRDLKIDRKI--LERAKAIDFFKKQGEFYKAQIIE 161

Query: 679 VSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                ED  ++S      LC G HV +T +I +  ++    +     R
Sbjct: 162 SIPGDEDLSLYSQGDFTDLCRGPHVPATSKIKVFKLMK---VAGAYWR 206


>gi|282850470|ref|ZP_06259849.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
 gi|282579963|gb|EFB85367.1| threonine--tRNA ligase [Veillonella parvula ATCC 17745]
          Length = 636

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +      ++  + ++ H+A+H+L  A+  +        G  I   G  +D+
Sbjct: 50  REELVDGSEVAFLTFEEDGGKHTLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDI 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M R++AI    A      Y   +     
Sbjct: 109 DMEHTLTPEDLGKIEKEMSRIVKENLPITKSVMPRQEAIDFFKAK--NEDYKVELIQDLP 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      +S      LC G HV+STG++    +    SI     R
Sbjct: 167 EDAVISCYSQGDFIDLCAGPHVASTGKVKAFKL---QSIAGAYWR 208


>gi|222148633|ref|YP_002549590.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
 gi|254783504|sp|B9JWF4|SYT_AGRVS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221735619|gb|ACM36582.1| threonyl-tRNA synthetase [Agrobacterium vitis S4]
          Length = 666

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           KKA  I +   + +      +  + +      R    I H   H+L  A+  +       
Sbjct: 36  KKAVAIALDGVVRDLADPVVDGKIEIVTRADPRALELIRHDTAHVLAEAVQEMWPGTQVT 95

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    AA  
Sbjct: 96  IGPVI-ENGFYYDFAKNEPFTPEDLPKIEKKMKEIIQRNQPFRKEVWSREKAREVFAAK- 153

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
            G  Y   +     E +D  ++        C G H++STG+I     ++    +     R
Sbjct: 154 -GESYKVELIDAIPEDQDIKIYYQGDWFDPCRGPHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|311064400|ref|YP_003971125.1| threonyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
 gi|310866719|gb|ADP36088.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium bifidum PRL2010]
          Length = 676

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + ID ++   +   HSATH++  A+  +   +V      I  DG  +D  
Sbjct: 48  PLSDGDAVEPVAIDSEDGLGIMR-HSATHVMAQAVQELFP-NVKLGVGPIIKDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK+IE ++  I+        R++  E+A+                  + D 
Sbjct: 106 VDEPFTPDDLKAIEKHMQRIVKSAQSFRRRVVTEEEALKEETDQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                V  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 STATEVSGKELSFYDNVDRDGNTVWKDLCRGPHLPNTRFIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|187477891|ref|YP_785915.1| threonyl-tRNA synthetase [Bordetella avium 197N]
 gi|123738749|sp|Q2L2M5|SYT_BORA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115422477|emb|CAJ49002.1| threonyl-tRNA synthetase [Bordetella avium 197N]
          Length = 650

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+ ++        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKSLYPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLQAIEKKMAELAR 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  V      R+DA+A   +  +G  Y   +       E   ++       LC G HV 
Sbjct: 135 KDEVVTREEWTRDDAVAYFKS--IGENYKAEIIASIPSNEKISLYREGEFIDLCRGPHVP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 193 STGKLKVFKLMK---LAGAYWR 211


>gi|315303326|ref|ZP_07873955.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
 gi|313628306|gb|EFR96810.1| threonyl-tRNA synthetase [Listeria ivanovii FSL F6-596]
          Length = 640

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  ESGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAID-SGFYYDIDTVAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +       E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDEYKLELIEAIPADETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|330892357|gb|EGH25018.1| putative alanyl-tRNA synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 182

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 29/183 (15%)

Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL-HHALSTIL 601
           +   Q    GI VH+   +   L    S+V  +D   RR++   HSA+H++     + I 
Sbjct: 22  VNGSQVSVNGIIVHYVDGDTSHLEVGASIVGAVDILRRRKIEALHSASHIMEEFLFAEIS 81

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
           G      GS +     R D   +  +T+ +L  IE  +N+ I+ + P+ T + N      
Sbjct: 82  GFERV--GSYVNEIKDRSDYNTASRLTADQLALIECKINEFISLDYPIETWLEN------ 133

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                              ++Y   G   + +C GTH  ST  I  +  +   +   G+ 
Sbjct: 134 ------------------DIKYWKCGPFKT-MCSGTHPPSTRHIGRVS-LKRKNQGRGLE 173

Query: 722 RIE 724
           RIE
Sbjct: 174 RIE 176


>gi|310287485|ref|YP_003938743.1| threonyl-tRNA synthetase [Bifidobacterium bifidum S17]
 gi|309251421|gb|ADO53169.1| threonyl-tRNA synthetase [Bifidobacterium bifidum S17]
          Length = 676

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + ID ++   +   HSATH++  A+  +   +V      I  DG  +D  
Sbjct: 48  PLSDGDAVEPVAIDSEDGLGIMR-HSATHVMAQAVQELFP-NVKLGVGPIIKDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK+IE ++  I+        R++  E+A+                  + D 
Sbjct: 106 VDEPFTPDDLKAIEKHMQRIVKSAQSFRRRVVTEEEALKEETDQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                V  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 STATEVSGKELSFYDNVDRDGNTVWKDLCRGPHLPNTRFIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|224283116|ref|ZP_03646438.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140266|ref|ZP_07802459.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132776|gb|EFR50393.1| threonyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171]
          Length = 676

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + ID ++   +   HSATH++  A+  +   +V      I  DG  +D  
Sbjct: 48  PLSDGDAVEPVAIDSEDGLGIMR-HSATHVMAQAVQELFP-NVKLGVGPIIKDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK+IE ++  I+        R++  E+A+                  + D 
Sbjct: 106 VDEPFTPDDLKAIEKHMQRIVKSAQSFRRRVVTEEEALKEETDQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                V  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 STATEVSGKELSFYDNVDRDGNTVWKDLCRGPHLPNTRFIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|123965897|ref|YP_001010978.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
 gi|166225479|sp|A2BVR0|SYT_PROM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123200263|gb|ABM71871.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515]
          Length = 638

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 78/216 (36%), Gaps = 18/216 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++ +  +V+           I HS  HL+ HA+  I  +     G  I  DG  +D+  
Sbjct: 50  PIKNDSKVVIITSRDKEGIEIIRHSFAHLIGHAVKQIYPNIKMAIGPVI-EDGFYYDIFS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSV 681
               T  +L  IE+ +N +I ++  V    +++++AI +      +   +  + +     
Sbjct: 109 EYRFTPEDLIKIEERINQLIRKDYDVEVLQVSKQEAIKTFKERDEIFKLRIIEEIDEKDS 168

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
                      +C G HV +T  +    ++  S       R               ++E 
Sbjct: 169 INLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGS---YWR------------GDSKNES 213

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           L+ +       + ++   ++ I E  ++      K+
Sbjct: 214 LQRIYGTAWSKEKDLTNYLKRIEEAEKRDHRKLGKK 249


>gi|304391869|ref|ZP_07373811.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
 gi|303296098|gb|EFL90456.1| threonyl-tRNA synthetase [Ahrensia sp. R2A130]
          Length = 663

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 19/244 (7%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     L L +   +R    I H   H+L  A+  I        G  I  +G  +D   
Sbjct: 54  PLAASGDLELVLRDDDRALELIRHDCAHVLAEAVQDIWPDTKVTIGPVI-ENGFYYDFDR 112

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P T  +L+ IE  + +II +N P    +  R+ A A      +G  Y   +     E 
Sbjct: 113 ETPFTPEDLERIEKKMREIIQRNDPFTHEVWTRDQAKAHFEK--IGETYKAELIDAIPEG 170

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           ++  ++       LC G H  STG+I     ++S   +     R ++     +R +    
Sbjct: 171 DNLNIYKQGEWMDLCLGPHGPSTGKIGNAFKLMS---VAGAYWRGDSDNQMLSRIYGTAW 227

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            ++ K L  +L + +       E    ++RKL         Q     +            
Sbjct: 228 ADE-KQLKQYLHMLE-------EAQKRDHRKLGREMDLFHFQEEGPGVVFWHAKGWKVFQ 279

Query: 799 HIIS 802
           H++S
Sbjct: 280 HLVS 283


>gi|114328278|ref|YP_745435.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
 gi|122326764|sp|Q0BRP0|SYT_GRABC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114316452|gb|ABI62512.1| threonyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1]
          Length = 642

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 12/171 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H A H+L  A+  +        G  I  +G  +D   ++P T  +L +IE  + +II
Sbjct: 70  MIRHDAAHVLAEAVQELFPGTQVTIGPSI-ENGFYYDFARNEPFTPEDLPAIEAKMREII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           A+N P    + +R+DAI        G KY  ++     + E   V+       LC G H+
Sbjct: 129 ARNAPFEREVWDRQDAIRFFQDK--GEKYKAQLIQDLPDTETITVYRQGEWLDLCRGPHM 186

Query: 700 SSTGEIML-LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            STG+I     ++    +     R +      +R +     ++ K L ++L
Sbjct: 187 RSTGDIGPAFRLMK---VAGAYWRGDHRNAMLSRIYGTAWRDQ-KELDAYL 233


>gi|312794079|ref|YP_004027002.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181219|gb|ADQ41389.1| threonyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 647

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 21/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II 
Sbjct: 73  YWHTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDVEESITMELLEKIEEEMQKIIK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    ++R++A+        G  Y   +     E E    +       LC G H+ 
Sbjct: 133 EDLKIERFELSRKEAVK--LMQEKGENYKVELINDIPEGETISFYRQGEFVDLCTGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG +    ++S   +     R               +++ L+ +       +  +   +
Sbjct: 191 STGRVKAFKLLS---VAGAYWR------------GNSKNKMLQRIYGISFEKKSELDEYL 235

Query: 761 EEIWEEYRK 769
           +++ E  ++
Sbjct: 236 KKLEEAKKR 244


>gi|46191233|ref|ZP_00120366.2| COG0441: Threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|189439311|ref|YP_001954392.1| threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|238692055|sp|B3DRX5|SYT_BIFLD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189427746|gb|ACD97894.1| Threonyl-tRNA synthetase [Bifidobacterium longum DJO10A]
          Length = 677

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + +D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLNDGDTVDPIALDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDQPFTPDDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|225025724|ref|ZP_03714916.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
 gi|224941505|gb|EEG22714.1| hypothetical protein EIKCOROL_02627 [Eikenella corrodens ATCC
           23834]
          Length = 635

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   KP T  ++ +IE  + ++I 
Sbjct: 73  IRHSCAHLVGHAVKQLYPNAKMVIGPVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV  +  R + I        G +Y  R+     E E  G++       +C G HV 
Sbjct: 132 QDYDVVKIMTPRAETIKIFQER--GEEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +               + G  A       +E L+ +      S+  +   +
Sbjct: 190 NTRFLKHFKLTK-------------LAG--AYWRGDSNNEMLQRIYGTAWASKDELKAYI 234

Query: 761 EEIWEEYRKLQLIHAKR 777
             I E  ++      K+
Sbjct: 235 TRIEEAEKRDHRRLGKQ 251


>gi|13471046|ref|NP_102615.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
 gi|22654133|sp|Q98LR2|SYT_RHILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14021790|dbj|BAB48401.1| threonyl-tRNA synthetase [Mesorhizobium loti MAFF303099]
          Length = 658

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 11/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAINGTVRDLSDPLGKSGKVEIITRDDARALELIRHDTAHVLAEAVQELWPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +   IE  + +IIA+N P    + +R+ A    A  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTPDDFPVIEKKMREIIARNKPFTKEVWSRDKAKKVFADK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G +Y   +     E +D  +++      LC G H++STG+I     ++    +     
Sbjct: 155 --GERYKLELIDAIPEDQDLKIYAQGDWFDLCRGPHMASTGQIGNAFKLMK---VAGAYW 209

Query: 722 R 722
           R
Sbjct: 210 R 210


>gi|222528807|ref|YP_002572689.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455654|gb|ACM59916.1| threonyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]
          Length = 647

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 21/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II 
Sbjct: 73  YWHTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDIEESITREILEKIEEEMQKIIK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    ++RE+AI        G  Y   +     E E    +       LC G H+ 
Sbjct: 133 EDLKIERFELSREEAIK--LMQQRGENYKVELINDIPEGEIISFYRQGEFVDLCTGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG +    ++S   +     R               +++ L+ +       +  +   +
Sbjct: 191 STGRVKAFKLLS---VAGAYWR------------GNSKNKMLQRIYGISFEKKSELDEYL 235

Query: 761 EEIWEEYRK 769
           +++ E  ++
Sbjct: 236 KKLEEAKKR 244


>gi|83594816|ref|YP_428568.1| threonyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170]
 gi|123753041|sp|Q2RNL4|SYT_RHORT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|83577730|gb|ABC24281.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 643

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 11/164 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + T+ S+ L           + H A H++  A+  +        G  I  +G  +D   
Sbjct: 50  PITTDASVSLITARDAAALELLRHDAAHVMAQAVQELYPGTQVTIGPAI-ENGFYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           ++P T  +L+ IE+ + +I+ ++LP+V  +  R++AIA      LG  Y   +       
Sbjct: 109 AEPFTPEDLERIEERMREIVGRDLPIVREVWERDEAIAYFTK--LGETYKAELITGLPAN 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           ED  V+       LC G H+ STG++     ++    +     R
Sbjct: 167 EDVSVYRQGDWLDLCRGPHLPSTGKLGTAFKLMK---LAGAYWR 207


>gi|304406649|ref|ZP_07388304.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304344182|gb|EFM10021.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 645

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 18/206 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRR 581
           E+G  + D   +I  G++      +    G      +     +  +  + ++T+D  +  
Sbjct: 16  ESGATIDDVAGSISKGLQ------KNAVAGKIDGKVVDIYTPIEADAKVEIVTLDSADGL 69

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           ++   HS  HL+  A+  + G+   + G   +  DG  +D+   + +T  +L  IE  + 
Sbjct: 70  EV-YRHSTAHLMAQAIKRLYGNTAVKLGIGPVIEDGFYYDIDLEQSLTPEDLVKIEKEMA 128

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ ++LP+  R++ RE+AIA+     LG      +     E  +  ++       LC G
Sbjct: 129 KIVKEDLPIRRRVVGREEAIATFT--ELGDPLKLELIRDLPENVELTIYDQGEFFDLCRG 186

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            H+ STG I    ++S   I     R
Sbjct: 187 PHLPSTGRIKAFKLLS---IAGAYWR 209


>gi|289434839|ref|YP_003464711.1| hypothetical protein lse_1474 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171083|emb|CBH27625.1| thrS [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 640

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAFSISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAID-SGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +       E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDEYKLELIEAIPADETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|312132685|ref|YP_004000024.1| thrs [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689212|ref|YP_004208946.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis
           157F]
 gi|311773642|gb|ADQ03130.1| ThrS [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460548|dbj|BAJ71168.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 677

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + +D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLNDGDTVDPIALDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDQPFTPDDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T    +  L     +L+  A 
Sbjct: 224 NPTMQRIYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|326492063|dbj|BAJ98256.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326499331|dbj|BAK06156.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 667

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           G    E  +VL  +  +   L I H+  H++  A+  +  +     G  I  +G  +D  
Sbjct: 77  GEEEVEARVVLPTNESSENLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWID-NGFYYDFD 135

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRV 678
             +P+T  +LK I+  ++ II +NLP+V   ++RE+A     A  L   Y     +R++ 
Sbjct: 136 M-EPLTDKDLKKIKKEMDRIIRRNLPLVREEVSREEAQKRIQA--LNEPYKLEILERIKE 192

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +     G     LC G HV STG+I     V   S+     R
Sbjct: 193 EPITIYHIGEEWWDLCAGPHVESTGKIQR-KAVELESVAGAYWR 235


>gi|218515175|ref|ZP_03512015.1| threonyl-tRNA synthetase [Rhizobium etli 8C-3]
          Length = 328

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  KDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEPFTPDDLPKIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P   +I +RE A    AA   G +Y   +     E +D  ++       
Sbjct: 124 KKMKEIIARNAPFTKQIWSREKAKEVFAAK--GEQYKVELVDAIPEGQDLKIYHQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG++     ++    +     R
Sbjct: 182 LCRGPHMASTGQVGTAFKLMK---VAGAYWR 209


>gi|294779531|ref|ZP_06744926.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300861074|ref|ZP_07107161.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|307268336|ref|ZP_07549717.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|307276154|ref|ZP_07557285.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|294453410|gb|EFG21817.1| threonine--tRNA ligase [Enterococcus faecalis PC1.1]
 gi|300850113|gb|EFK77863.1| threonine--tRNA ligase [Enterococcus faecalis TUSoD Ef11]
 gi|306507148|gb|EFM76287.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2134]
 gi|306515362|gb|EFM83896.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4248]
 gi|315036305|gb|EFT48237.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0027]
          Length = 660

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIAEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|325270507|ref|ZP_08137107.1| alpha-amylase [Prevotella multiformis DSM 16608]
 gi|324987083|gb|EGC19066.1| alpha-amylase [Prevotella multiformis DSM 16608]
          Length = 721

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 13/162 (8%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   ++  N+ +    H+A HLL+  +  + G+  S N            +   KP   
Sbjct: 566 TVEYVLNSHNKEEFPPAHTAEHLLNQVMFRLFGAARSTNAHIERKKSKMTFILDHKPDRK 625

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA +LPV   +++R+      +   L    ++ +R+V +     G +
Sbjct: 626 EE-KAIEDEMNRLIADDLPVTFELVDRDSLPEGVSLDRLPEDASEMLRLVRI-----GDY 679

Query: 690 SSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIRRIEAIT 727
               C G HV ST +I    ++     E        RI    
Sbjct: 680 DVCPCIGRHVRSTAQIGRFELLGTNWDEQKHA---FRIRFKV 718


>gi|222086050|ref|YP_002544582.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
 gi|254783503|sp|B9JFG4|SYT_AGRRK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221723498|gb|ACM26654.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84]
          Length = 662

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 11/207 (5%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           + +   +  D G    D        + KKA  I +   + +      +  + +     +R
Sbjct: 9   FPDGSVRSYDAGATGRDVAESISKSLAKKAVAIAIDGTVRDLSEPVADGKIEIITRNDDR 68

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + 
Sbjct: 69  ALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEPFTPDDLPVIEKKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           +II +N P   +I +RE A    A    G +Y   +     E +D  ++       LC G
Sbjct: 128 EIIQRNKPFTRQIWSREKAKQVFADK--GERYKVELVDAIPEGQDLKIYYQGDWFDLCRG 185

Query: 697 THVSSTGEIM-LLYIVSESSIRAGIRR 722
            H++STG+I     ++    +     R
Sbjct: 186 PHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|119505276|ref|ZP_01627351.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
 gi|119458967|gb|EAW40067.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2080]
          Length = 639

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 89/238 (37%), Gaps = 32/238 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  +  +G  +D       T  +L+ IE  + ++ +
Sbjct: 71  IRHSTAHLLAQAVQQLFPGTQVTIGPTV-ENGFYYDFATGHNFTPEDLERIEKRMEELAS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            +LPV   + +RE AI       +G  +  ++     E E+  ++       LC G HV 
Sbjct: 130 ADLPVERVVYSREQAIDLF--RNMGEHFKVQIIEDLPEGEEISIYKQGEWMDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ------DEKLKSLASFLKVSQG 754
           +T +I    +     +     R +A      R +             L  +A   K    
Sbjct: 188 TTSKIKAFKLTK---VAGAYWRGDANNQMLQRIYGTAWGNKKQLKAYLNRIAEAEKRDHR 244

Query: 755 NVVGRVE--EIWEE--------------YRKLQLIHAKRKLQLNVEDLSCHKIADVNF 796
            +  +++     EE              Y+ ++    K++L+ + E++   ++ D++ 
Sbjct: 245 KIAKKLDLFHTQEEAPGMVFWHPAGWTIYQVIESYMRKQQLRFDYEEIKTPQVVDISL 302


>gi|229149979|ref|ZP_04278204.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1550]
 gi|228633417|gb|EEK90021.1| Alanyl-tRNA synthetase domain protein [Bacillus cereus m1550]
          Length = 142

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 13/146 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             +HS  HL+   +    G+  +  G+ I PD  R D    + ++S E++ I + VN +I
Sbjct: 1   MRHHSLLHLIGAVVYEKYGALCT--GNQIYPDKARIDFNELQELSSVEVEEIVEEVNKLI 58

Query: 644 AQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            QN  + TR M+RE+A  +         LL T   + +R+V++E  D        CGGTH
Sbjct: 59  KQNKEISTRYMSREEAENAVGMIKTAINLLPTTIQE-IRIVTIENLD-----EQACGGTH 112

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIE 724
           V +T EI  L I    S     RR E
Sbjct: 113 VKNTSEIGTLVIDKVKSKGKQNRRFE 138


>gi|254447322|ref|ZP_05060789.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
 gi|198263461|gb|EDY87739.1| threonyl-tRNA synthetase [gamma proteobacterium HTCC5015]
          Length = 637

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 80/219 (36%), Gaps = 22/219 (10%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           +  +  +  L +  D        I HS  HL+ HA+  +        G  I   G  +D+
Sbjct: 48  KLPIVEDAELQIITDRDAEGLEIIRHSFAHLMGHAVKQLYPEAKMAIGPVIDY-GFYYDI 106

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            + +P T  ++++IE  +  +  ++  V   + N ++A+ +         Y   +     
Sbjct: 107 DYERPFTPEDVEAIEQRIKALTKKDYEVEVVVSNPQEAVDTFKQR--DEPYKVEIASEIP 164

Query: 682 EYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           E E+  ++       +C G HV +T  +    ++S   +     R               
Sbjct: 165 EGEEVKLYHHEEYTDMCRGPHVPNTRHLRHFKLMS---VAGAYWR------------GDS 209

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            ++ L+ +      ++ ++   +  + E  ++     AK
Sbjct: 210 DNKMLQRIYGTAWTNKKDLKAHLTMLEEAEKRDHRKLAK 248


>gi|169829542|ref|YP_001699700.1| threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
 gi|168994030|gb|ACA41570.1| Threonyl-tRNA synthetase 1 [Lysinibacillus sphaericus C3-41]
          Length = 643

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G      +  +  +  + ++ +           
Sbjct: 20  GTSTDDVALSISPGLR------KKAYAGKINDVLVDLKTPIEEDATIAIITQDDEEALEI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL   A+  +        G  I   G  +D+    PIT+ +L +IE  +  IIA
Sbjct: 74  LRHSTAHLTAQAIKRLFPDVKLGIGPVID-GGFYYDIDSPTPITAEDLPAIEKEMKKIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL V  + ++R +A A      +G +Y   +       E   ++       LC G HV 
Sbjct: 133 ENLEVERKNVSRAEAQAMYE--EIGDEYKLELLEAIPADEQVSIYYQGEFFDLCRGIHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++S             + G  A       ++ L+ +       +  +   +
Sbjct: 191 STGKLREFKLLS-------------LAG--AYWRGNSDNKMLQRIYGTAFFKKEELKHHL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
            ++ EE ++       ++L+L
Sbjct: 236 -QMLEEAKERDHRKIGKELEL 255


>gi|238018994|ref|ZP_04599420.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
 gi|237864478|gb|EEP65768.1| hypothetical protein VEIDISOL_00856 [Veillonella dispar ATCC 17748]
          Length = 636

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +      ++  + ++ H+A+H+L  A+  +        G  I   G  +D+
Sbjct: 50  REELVDGSEVAFLTFEEDGGKHTLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDI 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M+R++AI    +      Y   +     
Sbjct: 109 DMEHTLTPEDLGKIEKEMSRIVKENLPITKSVMSRQEAIEFFKSK--NEDYKVELIEDLP 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      ++      LC G HV+STG++    +    SI     R
Sbjct: 167 EDAVISCYAQGDFIDLCAGPHVASTGKVKAFKL---QSIAGAYWR 208


>gi|15965178|ref|NP_385531.1| threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
 gi|22654127|sp|Q92QB0|SYT_RHIME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15074358|emb|CAC46004.1| Probable threonyl-tRNA synthetase [Sinorhizobium meliloti 1021]
          Length = 661

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 66  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 125 KKMREIIARNKPFTKEVWSRDRAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFD 182

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG+I     ++    +     R
Sbjct: 183 LCRGPHMASTGQIGTAFKLMK---VAGAYWR 210


>gi|307321522|ref|ZP_07600917.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
 gi|306892829|gb|EFN23620.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83]
          Length = 660

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 124 KKMREIIARNKPFTKEVWSRDRAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG+I     ++    +     R
Sbjct: 182 LCRGPHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|307309192|ref|ZP_07588863.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
 gi|306900338|gb|EFN30954.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C]
          Length = 660

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 124 KKMREIIARNKPFTKEVWSRDRAKEVFAAK--GENYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG+I     ++    +     R
Sbjct: 182 LCRGPHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|47096724|ref|ZP_00234309.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898274|ref|ZP_05258198.1| threonyl-tRNA synthetase [Listeria monocytogenes J0161]
 gi|254912233|ref|ZP_05262245.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
 gi|254936561|ref|ZP_05268258.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|47014908|gb|EAL05856.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609155|gb|EEW21763.1| threonyl-tRNA synthetase [Listeria monocytogenes F6900]
 gi|293590208|gb|EFF98542.1| threonyl-tRNA synthetase [Listeria monocytogenes J2818]
          Length = 640

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI      ++G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRF--KVIGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|75908999|ref|YP_323295.1| threonyl-tRNA synthetase [Anabaena variabilis ATCC 29413]
 gi|75702724|gb|ABA22400.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Anabaena
           variabilis ATCC 29413]
          Length = 615

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 24/198 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II 
Sbjct: 36  IRHTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTDKDLKAIQKEMVKIIN 94

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVS 700
           + LPVV   ++RE+A        +   Y   +        +     G     LC G HV 
Sbjct: 95  RKLPVVREEVSREEAERR--IQEIKEPYKLEILADIKSEPITIYHLGNEWWDLCAGPHVE 152

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           +T ++     +   S+     R     G   ++ L                S   +    
Sbjct: 153 NTKDLNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------SPEQLAEYK 199

Query: 759 --RVEEIWEEYRKLQLIH 774
             + E +  ++RKL    
Sbjct: 200 RRKEEALRRDHRKLGKEL 217


>gi|237744663|ref|ZP_04575144.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229431892|gb|EEO42104.1| threonyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 637

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K +G  V  + V       E    + ID      +   HS  HL+  A+  +        
Sbjct: 37  KVDGKNVDMSYVLDHNAEVEF---IDIDSPEGEDIVR-HSTAHLMAQAVLRLYPDTKVTI 92

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI      + 
Sbjct: 93  GPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKKIVKENIKLEKYVLPRDEAIKYF-RDVD 150

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
             KY   +     + E    +       LC GTHV STG +                 + 
Sbjct: 151 KNKYKVEIVEAIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFK-------------LR 197

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           A+ G  A      +++ L+ +  +   S  + + +  ++ EE  K       ++L+L
Sbjct: 198 ALAG--AYWRGNSKNKMLQRIYGY-SFSNEDKLKKHLKLVEEAEKRDHRKLGKELEL 251


>gi|153955810|ref|YP_001396575.1| threonyl-tRNA synthetase [Clostridium kluyveri DSM 555]
 gi|219856177|ref|YP_002473299.1| hypothetical protein CKR_2834 [Clostridium kluyveri NBRC 12016]
 gi|189083603|sp|A5N258|SYT_CLOK5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783517|sp|B9E5W0|SYT_CLOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146348668|gb|EDK35204.1| ThrS [Clostridium kluyveri DSM 555]
 gi|219569901|dbj|BAH07885.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 88/247 (35%), Gaps = 23/247 (9%)

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +L I+  +K    +     +     +  +  + +        +  + H+A+H+L  A+ 
Sbjct: 25  AKLSISLSKKALGAVVDGKVVELNYKINKDCKVEILTFEDEEGKKILRHTASHILAQAIK 84

Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
            +        G  I   G  +DV      T   L+ IE  +N+II +N+ +    + RE+
Sbjct: 85  RLYPEVKLAIGPAID-SGFYYDVDAEFSFTPELLEKIEGKMNEIIKENIKLERFELPREE 143

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSES 714
           AI           Y   +     E      +       LC G HV STG    + ++S  
Sbjct: 144 AIKF--MEEKNEPYKVELIKDLPEDSIISFYKQGDFVDLCAGPHVPSTGRAKAVKLLS-- 199

Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            I     R                ++ L+ +   +   + ++   + ++ EE +K     
Sbjct: 200 -IAGAYWR------------GNENNKMLQRIYGTVFEKKSDLQDYL-KLMEEAKKRDHRK 245

Query: 775 AKRKLQL 781
             ++L L
Sbjct: 246 LGKELDL 252


>gi|256026433|ref|ZP_05440267.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289764445|ref|ZP_06523823.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289716000|gb|EFD80012.1| threonyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 637

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 24/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          +    +L  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 31  KKSVGAKVDGKNVDMSYVLDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPDTK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 90  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKKIVKENIKLEKYVLPRDEAIKYF-R 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   +     + E    +       LC GTHV STG +                
Sbjct: 148 DVDKNKYKVEIVEAIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFK------------ 195

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            + A+ G  A      +++ L+ +  +   S  + + +  ++ EE  K       ++L+L
Sbjct: 196 -LRALAG--AYWRGNSKNKMLQRIYGY-SFSNEDKLKKHLKLVEEAEKRDHRKLGKELEL 251


>gi|312622904|ref|YP_004024517.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203371|gb|ADQ46698.1| threonyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 639

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II 
Sbjct: 73  YWHTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDIEESITREILEKIEEEMQKIIK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    ++RE+AI        G  Y   +     E E    +       LC G H+ 
Sbjct: 133 EDLKIERFELSREEAIK--LMQQRGENYKVELINDIPEGEVISFYKQGEFVDLCTGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++S   +     R
Sbjct: 191 STGRVKAFKLLS---VAGAYWR 209


>gi|255066456|ref|ZP_05318311.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
 gi|255049336|gb|EET44800.1| threonine--tRNA ligase [Neisseria sicca ATCC 29256]
          Length = 310

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 84/232 (36%), Gaps = 22/232 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             G      +     +  + ++ +           I HS  HL+ HA+  +  +     G
Sbjct: 36  VAGKVNGKLVDACDPITEDSTVQIITPKDQEGVEIIRHSCAHLVGHAVKQLYPNAKMVIG 95

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             I  +G  +D+   KP T  ++ +IE  + ++IAQ+  V+  +  R + I        G
Sbjct: 96  PVI-EEGFYYDIATEKPFTPEDVAAIEARMKELIAQDYNVIKIMTPRAETIKIFQDR--G 152

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E E  G++       +C G HV +T  +    +               
Sbjct: 153 EEYKLRLIEDMPEVEAMGMYHHQEYVDMCRGPHVPNTRFLKNFKLTK------------- 199

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + G  A       +E L+ +      ++  +   ++ I E  ++      K+
Sbjct: 200 LAG--AYWRGDSNNEMLQRIYGTAWATKDELKAYIQRIEEAEKRDHRKLGKQ 249


>gi|260494526|ref|ZP_05814656.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260197688|gb|EEW95205.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 637

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 24/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          +    +L  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 31  KKSVGAKVDGKNVDMSYVLDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPDTK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 90  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKKIVKENIKLEKYVLPRDEAIKYF-R 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   +     + E    +       LC GTHV STG +                
Sbjct: 148 DVDKNKYKVEIVEAIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFK------------ 195

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            + A+ G  A      +++ L+ +  +   S  + + +  ++ EE  K       ++L+L
Sbjct: 196 -LRALAG--AYWRGNSKNKMLQRIYGY-SFSNEDKLKKHLKLVEEAEKRDHRKLGKELEL 251


>gi|327536012|gb|AEA94846.1| threonine--tRNA ligase [Enterococcus faecalis OG1RF]
          Length = 660

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITIYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|269798232|ref|YP_003312132.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
 gi|269094861|gb|ACZ24852.1| threonyl-tRNA synthetase [Veillonella parvula DSM 2008]
          Length = 636

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +          + ++ H+A+H+L  A+  +        G  I   G  +D+
Sbjct: 50  REELVDGSEVAFLTFEDEGGKHTLRHTASHILAQAVKRLWPEAKLAIGPAID-KGFYYDI 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M R++AI    A      Y   +     
Sbjct: 109 DMEHILTPEDLGKIEKEMSRIVKENLPITKSVMPRQEAIEFFKAK--NEDYKVELIQDLP 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      +S      LC G HV+STG++    +    SI     R
Sbjct: 167 EDAVISCYSQGDFIDLCAGPHVASTGKVKAFKL---QSIAGAYWR 208


>gi|303257521|ref|ZP_07343533.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|331000214|ref|ZP_08323898.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
 gi|302859491|gb|EFL82570.1| threonine--tRNA ligase [Burkholderiales bacterium 1_1_47]
 gi|329572380|gb|EGG54033.1| threonine--tRNA ligase [Parasutterella excrementihominis YIT 11859]
          Length = 641

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 11/206 (5%)

Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
            +   +  D+   +GD    +     +    G      +     +    ++ +  D    
Sbjct: 7   PDGSKREFDSPVTVGDVAASIGAGLARAALAGKVNGKLVDLSHPITENSTVSIVTDKDPE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
               I HS +HL+  A+  +        G  I  +G  +D +  K +T+ +L  IE  ++
Sbjct: 67  GLEIIRHSTSHLMAQAVKELYPEAQITIGPVI-ENGFYYDFSLPKHLTNEDLPLIEKKMD 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           +I+ ++LP+V   M+R++A+    +  +G  Y   +       E   ++       LC G
Sbjct: 126 EIVKRDLPIVREEMDRDEAVKYFNS--IGEHYKAEIIGSIPAGETISLYRQGDYVDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV S      L +     +     R
Sbjct: 184 PHVPS---TGRLKVHKLMKLAGAYWR 206


>gi|302783999|ref|XP_002973772.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
 gi|300158810|gb|EFJ25432.1| hypothetical protein SELMODRAFT_442211 [Selaginella moellendorffii]
          Length = 795

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 21/203 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L + H+  H++  A+ T+        G  I   G  +D    +P++  +LK I+  ++ I
Sbjct: 84  LRMRHTCAHVMAMAVQTLYPDAKVTIGPWI-EKGFYYDFDLKEPLSDKDLKKIKKEMDRI 142

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTH 698
           I +NLP+    ++RE+A        +  KY     + ++   +     G     LC G H
Sbjct: 143 IGRNLPLRREEVSREEAKDR--IMSINEKYKLEILEDIKTEPITIYHIGNDWWDLCAGPH 200

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG++     +   S+     R     G   R  L             LK  Q     
Sbjct: 201 VERTGQLNR-KAIELESVAGAYWR-----GDVKRQMLQRIYGTAWQTEEQLKAYQTQ--- 251

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL 781
                 EE ++       + L+L
Sbjct: 252 -----KEEAKRRDHRRLGQDLEL 269


>gi|70733467|ref|YP_263242.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
 gi|68347766|gb|AAY95372.1| threonyl-tRNA synthetase [Pseudomonas fluorescens Pf-5]
          Length = 629

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  +  S     G  I  DG  +D  H +P T+ +L+ IE  ++ + A
Sbjct: 71  LRHSCAHLLAMAVKQLFPSAQVAIGPVI-EDGFFYDFAHERPFTTEDLELIEARMHSLAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N  V  R ++RE A+   A    G  Y   +           ++       LC G H+ 
Sbjct: 130 TNHSVRRRELSREQALQHFADQ--GEHYKVELIRDLPPDAVLSLYRQGDFEDLCRGPHLR 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEA 725
           STG++    +     +     R +A
Sbjct: 188 STGQLRAFKLTK---VAGAYWRGDA 209


>gi|315158985|gb|EFU03002.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0312]
          Length = 660

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+ + +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENIIMSIHIT--FPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|310640050|ref|YP_003944808.1| ser-tRNA(thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
 gi|309245000|gb|ADO54567.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Paenibacillus
           polymyxa SC2]
          Length = 637

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 14/204 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D   +I  G++      +   + + ++  + E   L      ++T+D  +  +
Sbjct: 16  EQGVTIADVAGSISSGLKKNAVAGKVNGKAVDLNTVLDENVDLE-----IITLDGADGLE 70

Query: 583 LSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   HS  HLL  AL  I G  +V      +   G  +D+    P++  +L  IE  +  
Sbjct: 71  I-YRHSTAHLLAQALKRIYGEKNVKLGIGPVIDSGFYYDIDIENPLSVDDLAKIEKEMAK 129

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTH 698
           I  +NLP+  R+++RE+A           K     D      +   D G     LC G H
Sbjct: 130 ITQENLPITRRVVSREEATRIFGEMEDPLKLELIRDLPEEAEITIYDQGEFFD-LCRGPH 188

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + STG I    ++S   +     R
Sbjct: 189 LPSTGRIKAFKLLS---VAGAYWR 209


>gi|312876378|ref|ZP_07736363.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796872|gb|EFR13216.1| threonyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 647

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 21/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ +H+L  A+  + G  V         +G  +D    + IT   L+ IE+ +  II 
Sbjct: 73  YWHTTSHILAQAVKRLFGDKVKLGIGPAIDNGFYYDFDVEESITMELLEKIEEEMQKIIK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    ++RE+++        G  Y   +     E E    +       LC G H+ 
Sbjct: 133 EDLKIERFELSREESVK--LMQEKGENYKVELINDIPEGETISFYRQGEFVDLCTGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG +    ++S   +     R               +++ L+ +       +  +   +
Sbjct: 191 STGRVKAFKLLS---VAGAYWR------------GNSKNKMLQRIYGISFEKKSELDEYL 235

Query: 761 EEIWEEYRK 769
           +++ E  ++
Sbjct: 236 KKLEEAKKR 244


>gi|269836488|ref|YP_003318716.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
 gi|269785751|gb|ACZ37894.1| threonyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745]
          Length = 596

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 12/187 (6%)

Query: 569 MSLVLTIDYQNRRQL---SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             + L +D +N+ +L    + HSA H++  A+  +        G  I  +G  +D    +
Sbjct: 6   EEMDLQVDVENQEELELARMRHSAAHVMAQAVLEMFPGAKLAIGPAI-ENGFYYDFDLPR 64

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T  +L  IE+ + +I     P   R ++RE+A+   A      +    +   +V    
Sbjct: 65  SLTPDDLGKIEERMREIKQGAYPFERREVSREEALKLFADQPYKIEIIQDLPEDAVISTY 124

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQ 738
                + LC G HV +T +I    +++ +         R  ++RI   T  R+   L   
Sbjct: 125 TQDSFTDLCRGPHVDNTSQIGHFKLLNVAGAYWRGDEKRPMLQRIYG-TSWRSEEELQDY 183

Query: 739 DEKLKSL 745
             +L+  
Sbjct: 184 LHRLEEA 190


>gi|312901397|ref|ZP_07760674.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
 gi|311291473|gb|EFQ70029.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0470]
          Length = 626

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 8   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 65

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 66  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 125

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 126 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 185

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 186 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 227


>gi|283851379|ref|ZP_06368661.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
 gi|283573329|gb|EFC21307.1| threonyl-tRNA synthetase [Desulfovibrio sp. FW1012B]
          Length = 647

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 26/262 (9%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
           +V  + T   A AG   G        G R +   V     G  V          R    +
Sbjct: 2   QVTIEDTSLEAAAGESCGQVLSRAISGKRFK-NSVACLVNGQPVDMTAPLPEDARELEPV 60

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D      +   HSA H++  A+  +  S     G  I  +G  +D    +P T  +
Sbjct: 61  A--VDSPLGLSIIR-HSAAHIMAEAVKKLFPSVQVTIGPAI-ENGFYYDFAFERPFTPED 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS- 690
           L++IE  +   IA N P     + + DA A  A+   G  Y   +   ++  +   ++  
Sbjct: 117 LEAIEAEMRASIAANHPFSCTYVPKADAKALFASQ--GESYKLEIMDENIVGDTVSLYRH 174

Query: 691 ---SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
              + LC G HV +TG +  + ++S   +     R               +   L+ +  
Sbjct: 175 GLFTDLCRGPHVPTTGMVRAVKLLS---VAGAYWR------------GDEKRPMLQRIYG 219

Query: 748 FLKVSQGNVVGRVEEIWEEYRK 769
               S+ ++   ++ + E  ++
Sbjct: 220 TAFASEADLKTYLKHLEEAKKR 241


>gi|323698513|ref|ZP_08110425.1| threonyl-tRNA synthetase [Desulfovibrio sp. ND132]
 gi|323458445|gb|EGB14310.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans ND132]
          Length = 645

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  +     G  IT DG  +D  + +P T  +L++IE  +   + 
Sbjct: 71  IRHSAAHVMAEAVKKLFPTAKVTIGPAIT-DGFYYDFDYERPFTPEDLEAIEKEMLSSVG 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
            + P V  +M++ +A     A   G  Y     +  +  ++  +++    + LC G HV+
Sbjct: 130 ADKPFVRTVMSKAEAKKMFEAK--GETYKSE-IMDDLGGDEFSIYTHGDFADLCRGPHVA 186

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            TG+I    ++S   +     R +    Q  R +    ++  K+L  +L 
Sbjct: 187 RTGQIKAFKLLS---VAGAYWRGDEKNKQLQRIYGTAWEDP-KALKQYLN 232


>gi|225387532|ref|ZP_03757296.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
 gi|225046368|gb|EEG56614.1| hypothetical protein CLOSTASPAR_01285 [Clostridium asparagiforme
           DSM 15981]
          Length = 584

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            ++        +I H+A+H+L  A+  +        G  I  DG  +D       T  +L
Sbjct: 8   GSVQEAEDELRAIRHTASHVLAQAVKRLYPETKLAIGPAID-DGFYYDFDREGGFTPEDL 66

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
           + +E  +  I+ +NLPV   ++ R++AI        G  Y   +     + E    ++  
Sbjct: 67  EKLEGEMMKIVKENLPVKPFVLPRDEAIKF--MEEKGEPYKVELIEDLPDEETISFYTQG 124

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               LC G H+  T  +    + S   I     R
Sbjct: 125 EFTDLCAGPHIMYTKGVKAFKLTS---IAGAYWR 155


>gi|3293580|gb|AAC25784.1| AlaS [Serratia marcescens]
          Length = 63

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           S+   VT+DL DR  A +L    A+   GG GG RP MA +GG + N    A+  V +++
Sbjct: 1   SLFAGVTKDLTDRVKAGELIGNVAQQF-GGKGGVRPDMAMAGGTDINALPAALNSVEAWV 59


>gi|209549439|ref|YP_002281356.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238065117|sp|B5ZQK2|SYT_RHILW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209535195|gb|ACI55130.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 668

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  KDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEPFTPDDLPKIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P   +I +RE A    AA   G  Y   +       +D  +++      
Sbjct: 124 KKMKEIIARNAPFTKQIWSREKAKEVFAAK--GENYKVELVDAIPAGQDLKIYNQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG++     ++    +     R
Sbjct: 182 LCRGPHMASTGQVGTAFKLMK---VAGAYWR 209


>gi|227554282|ref|ZP_03984329.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229544818|ref|ZP_04433543.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|307289786|ref|ZP_07569723.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|227176572|gb|EEI57544.1| threonyl-tRNA synthetase [Enterococcus faecalis HH22]
 gi|229310090|gb|EEN76077.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1322]
 gi|306499171|gb|EFM68649.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0411]
 gi|315030800|gb|EFT42732.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4000]
 gi|315575247|gb|EFU87438.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309B]
 gi|315582393|gb|EFU94584.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0309A]
          Length = 660

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|121997230|ref|YP_001002017.1| threonyl-tRNA synthetase [Halorhodospira halophila SL1]
 gi|166223346|sp|A1WU53|SYT_HALHL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|121588635|gb|ABM61215.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Halorhodospira
           halophila SL1]
          Length = 640

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  +  +G  +D    + ++  EL++IE  ++++  
Sbjct: 71  IRHSTAHLMAQAVKQLHPEMQVTIGPTVD-NGFYYDFAGERSLSEDELETIEQRMSELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            + PV   + +RE A         G  Y  ++     E E   V+       LC G HV 
Sbjct: 130 ADHPVEREVWDREAARQFFLEQ--GETYKAQIIDDLPESETITVYRQGDFADLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    +     +     R
Sbjct: 188 STGKLKAFKLTK---VAGAYWR 206


>gi|226311191|ref|YP_002771085.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
 gi|226094139|dbj|BAH42581.1| threonyl-tRNA synthetase [Brevibacillus brevis NBRC 100599]
          Length = 637

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 10/210 (4%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           + +   +  D G  I D      + ++KKA        +V+     T+ + +  +   + 
Sbjct: 8   FPDGAVRQYDAGITIEDIAGSISSSLKKKAVAGKKDGKVVDLYTELTDDAAIEIVTLDSA 67

Query: 581 RQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             L    HS  HLL  A+  I G+ V      +  DG  +D+     ++  +L  IE  +
Sbjct: 68  DGLEVYRHSTAHLLAQAVKRIYGAEVKFGIGPVIEDGFYYDMDIPVSLSPEDLGKIEAEM 127

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVE-YEDGGVHSSALCG 695
             I+ ++LP+  ++++RE+A A        L      D     ++  YE G      LC 
Sbjct: 128 EKIVKEDLPIRRKVVSREEATAIFQELNDHLKLELIRDLPEDATITLYEQGEFFD--LCR 185

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           G H+ STG I    ++S   +     R +A
Sbjct: 186 GPHLPSTGFIKAFKLMS---VAGAYWRGKA 212


>gi|321312429|ref|YP_004204716.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|291485328|dbj|BAI86403.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
 gi|320018703|gb|ADV93689.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 643

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 94/239 (39%), Gaps = 23/239 (9%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      I  R  +  + ++ +  +        + HS  HLL  A+  I    V 
Sbjct: 36  KKSLAGKLNGKEIDLRTPINEDGTVEIITEGSEEGLQIMRHSTAHLLAQAIKRIY-KDVK 94

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                +  +G  +DV   + IT  +L  IE  +  I+  NLP+V + ++RE+A A    A
Sbjct: 95  FGVGPVIENGFYYDVEMDEAITPEDLPKIEKEMKKIVNANLPIVRKEVSREEAKARF--A 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            +G      +     E E   ++       LC G HV STG+I    ++S          
Sbjct: 153 EIGDDLKLELLDAIPEGETVSIYEQGEFFDLCRGVHVPSTGKIKEFKLLS---------- 202

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
              + G  A      +++ L+ +       + ++   +  + EE ++       ++L+L
Sbjct: 203 ---LAG--AYWRGDSKNQMLQRVYGTAFFKKADLEEHL-RMLEEAKERDHRKLGKELKL 255


>gi|303230749|ref|ZP_07317496.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514509|gb|EFL56504.1| threonine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6]
          Length = 636

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +      ++  + ++ H+A+H++  A+  +        G  I   G  +D+
Sbjct: 50  REELVDGSEVAFLTFEEDGGKHTLRHTASHVMAQAVKRLWPEAKLAIGPAID-KGFYYDI 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M+R++AI    +      Y   +     
Sbjct: 109 DMEHTLTPEDLTKIEKEMSRIVKENLPITKSVMSRQEAIEFFKSK--NEDYKVELIEDLP 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      ++      LC G HV+STG++    +    SI     R
Sbjct: 167 EDAVISCYAQGDFVDLCAGPHVASTGKVKAFKL---QSIAGAYWR 208


>gi|162457528|ref|YP_001619895.1| alanyl-tRNA synthetase [Sorangium cellulosum 'So ce 56']
 gi|161168110|emb|CAN99415.1| Alanyl-tRNA synthetase, probable [Sorangium cellulosum 'So ce 56']
          Length = 220

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 80/229 (34%), Gaps = 28/229 (12%)

Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
           +A      +V E ++G+   V   +T F+ + GGQ  D G         ++  V     G
Sbjct: 12  RADTTGNVVVTELIAGESPVVRVAETWFHPQGGGQRSDRGAM----GPARVLHVAH--HG 65

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
             V H +     L    +    +D   R+  S+ HS+ HL+   +  +     +  G   
Sbjct: 66  GMVDHFVDSLAGLSVGGTYGFAVDSAWRKLNSVYHSSGHLIAGLVENLQHGLTAVAGHP- 124

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            P   R +       +S +  +IE +       + P+  ++               G  Y
Sbjct: 125 WPGEARVEFEGQAEASSFDGLAIELSTRLGELLSKPIEVKVT--------------GDPY 170

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           + R   +       G      CG THV +  EI  + ++S       +R
Sbjct: 171 SSRAIQI-------GDFPPIPCGRTHVRALSEISAIRVLSIKRKGNRVR 212


>gi|227519418|ref|ZP_03949467.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|307280591|ref|ZP_07561639.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|227073125|gb|EEI11088.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0104]
 gi|306503957|gb|EFM73174.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0860]
 gi|315145737|gb|EFT89753.1| threonyl-tRNA synthetase [Enterococcus faecalis TX2141]
 gi|315151718|gb|EFT95734.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0012]
 gi|315173904|gb|EFU17921.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1346]
          Length = 660

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|169831543|ref|YP_001717525.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638387|gb|ACA59893.1| threonyl-tRNA synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 635

 Score = 81.7 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 12/151 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R  L   HS +H+L  A+  +        G  +T DG  +D    +  T  +L+ I
Sbjct: 63  DEDAR--LVYRHSTSHVLAQAVKRLYPEARLAIGPAVT-DGFYYDFDVPRTFTPEDLERI 119

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  + DIIA +LP+    ++R++A+        G  Y   +       E    +      
Sbjct: 120 ESEMEDIIAADLPIERFELSRDEALELVGGD--GENYKVELISGLGPDEVISFYRQGEFT 177

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            LC G HV STG I  + ++S   +     R
Sbjct: 178 DLCAGPHVPSTGRIKAVKLLS---VAGAYWR 205


>gi|308067332|ref|YP_003868937.1| Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
 gi|305856611|gb|ADM68399.1| Threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) (ThrRS)
           [Paenibacillus polymyxa E681]
          Length = 637

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 14/204 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D   +I  G++     V  K  G  V    V    +  E   ++T+D  +  +
Sbjct: 16  EQGVTIADVAGSISSGLKKN--AVAGKVNGKAVDLNTVLDQNVDLE---IITLDGADGLE 70

Query: 583 LSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +   HS  HLL  AL  I G  +V      +   G  +D+    P++  +L  IE  +  
Sbjct: 71  I-YRHSTAHLLAQALKRIYGEKNVKLGIGPVIDSGFYYDIDIENPLSVDDLAKIEKEMTK 129

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTH 698
           I  +NLP+  R+++RE+A           K     D      +   D G     LC G H
Sbjct: 130 IAQENLPITRRVVSREEATRIFGELEDPLKLELIRDLPEEAEITIYDQGEFFD-LCRGPH 188

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + STG I    ++S   +     R
Sbjct: 189 LPSTGRIKAFKLLS---VAGAYWR 209


>gi|303229391|ref|ZP_07316181.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515927|gb|EFL57879.1| threonine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 636

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +      ++  + ++ H+A+H++  A+  +        G  I   G  +D+
Sbjct: 50  REELVDGSEVAFLTFEEDGGKHTLRHTASHVMAQAVKRLWPEAKLAIGPAID-KGFYYDI 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M+R++AI    +      Y   +     
Sbjct: 109 DMEHTLTPEDLTKIEKEMSRIVKENLPITKSVMSRQEAIEFFKSK--NEDYKVELIEDLP 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      ++      LC G HV+STG++    +    SI     R
Sbjct: 167 EDAVISCYAQGDFVDLCAGPHVASTGKVKAFKL---QSIAGAYWR 208


>gi|315148859|gb|EFT92875.1| threonyl-tRNA synthetase [Enterococcus faecalis TX4244]
          Length = 660

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIIEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|121601812|ref|YP_988945.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
 gi|166223323|sp|A1USJ2|SYT_BARBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120613989|gb|ABM44590.1| threonyl-tRNA synthetase [Bartonella bacilliformis KC583]
          Length = 658

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +      R    I HS  H+L  A+  +        G  I  +G  +D   
Sbjct: 53  PLEQSGQVEIITRDDPRALQLIRHSCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFAR 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L +IE  + +II +N      I +RE A    +    G  Y   +     E 
Sbjct: 112 QQPFTLEDLNTIEKKMREIIQRNKFFKKEIWSREKAKKIFSDK--GELYKVELIDAIPED 169

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +D  ++       LC G HV STG+I     ++    +     R +A
Sbjct: 170 QDLKIYYQGDWFDLCRGPHVPSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|229549033|ref|ZP_04437758.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|312904390|ref|ZP_07763551.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|229305826|gb|EEN71822.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 29200]
 gi|310632289|gb|EFQ15572.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0635]
 gi|315162804|gb|EFU06821.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0645]
 gi|315576849|gb|EFU89040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0630]
          Length = 660

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|315171869|gb|EFU15886.1| threonyl-tRNA synthetase [Enterococcus faecalis TX1342]
          Length = 660

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 10/227 (4%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AI-VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
            I ++R I+      ++T D++N   +   HS+ HL+ +AL  +  +     G  I    
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHENALGILR-HSSAHLMANALRRLFPNIKFGVGPAIDSGF 118

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDR 675
                    P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D 
Sbjct: 119 YYDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDL 178

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 179 PEDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|16800662|ref|NP_470930.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|22654125|sp|Q92BF5|SYT_LISIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16414081|emb|CAC96825.1| threonyl-tRNA synthetase [Listeria innocua Clip11262]
 gi|313618753|gb|EFR90658.1| threonyl-tRNA synthetase [Listeria innocua FSL S4-378]
          Length = 640

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFEA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|284801950|ref|YP_003413815.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284995092|ref|YP_003416860.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
 gi|284057512|gb|ADB68453.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5578]
 gi|284060559|gb|ADB71498.1| threonyl-tRNA synthetase [Listeria monocytogenes 08-5923]
          Length = 640

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|254828206|ref|ZP_05232893.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
 gi|258600595|gb|EEW13920.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N3-165]
          Length = 640

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|313623625|gb|EFR93788.1| threonyl-tRNA synthetase [Listeria innocua FSL J1-023]
          Length = 640

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFEA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|329767326|ref|ZP_08258851.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
 gi|328836015|gb|EGF85706.1| threonyl-tRNA synthetase [Gemella haemolysans M341]
          Length = 647

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 7/205 (3%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI--DYQ 578
           + +   +  D    +     + ++  +K          I     +  +  L L +  D  
Sbjct: 6   FPDGNVREYDNKTPLEIAESISVSLKKKVISAKLDEDYIEVNKPITKDGHLKLIVADDED 65

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
                 + H+  H+L  AL  + G  V          G  +D      ++  + K+IE  
Sbjct: 66  KDSLYVLRHTCAHVLAQALRRLYGKDVHFGVGPAIDGGFYYDFDAEYKVSEEDFKAIEKE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           V  II++N  +  R +++E+A+          +  ND      +     G  +  LC G 
Sbjct: 126 VKKIISENHAIEGREVSKEEALEIFKEDPYKVELINDLPADEVITVYTQGDFTD-LCRGG 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HVS+T +I    ++S   +     R
Sbjct: 185 HVSATSKIKEFKLLS---VAGAYWR 206


>gi|16803599|ref|NP_465084.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
 gi|224501501|ref|ZP_03669808.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-561]
 gi|22654119|sp|Q8Y6X2|SYT_LISMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16410988|emb|CAC99637.1| threonyl-tRNA synthetase [Listeria monocytogenes EGD-e]
          Length = 640

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|17227831|ref|NP_484379.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17129680|dbj|BAB72293.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 615

 Score = 81.7 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 24/198 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  II 
Sbjct: 36  IRHTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTDKDLKAIQKEMVKIIN 94

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVS 700
           + LPVV   ++RE+A        +   Y   +        +     G     LC G HV 
Sbjct: 95  RKLPVVREEVSREEAERR--IQEIKEPYKLEILADIKSEPITIYHLGNEWWDLCAGPHVE 152

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           +T ++     +   S+     R     G   ++ L                +   +    
Sbjct: 153 NTKDLNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------TPEQLAEYK 199

Query: 759 --RVEEIWEEYRKLQLIH 774
             + E +  ++RKL    
Sbjct: 200 RRKEEALRRDHRKLGKEL 217


>gi|315033108|gb|EFT45040.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0017]
          Length = 672

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 83/218 (38%), Gaps = 8/218 (3%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGIL 565
            G+   +    T  + +   +  D+G    D  + +  +  +K   G F    I     +
Sbjct: 22  KGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPI 79

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             + SL +           + HS+ HL+ +AL  +  +     G  I             
Sbjct: 80  VEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGES 139

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYE 684
           P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D      +   
Sbjct: 140 PVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVY 199

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           D G     LC G HV STG I +  ++S   +     R
Sbjct: 200 DQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 233


>gi|254831960|ref|ZP_05236615.1| threonyl-tRNA synthetase [Listeria monocytogenes 10403S]
          Length = 640

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|46907789|ref|YP_014178.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b F2365]
 gi|47093096|ref|ZP_00230873.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217964294|ref|YP_002349972.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|226224160|ref|YP_002758267.1| threonyl-tRNA synthetase [Listeria monocytogenes Clip81459]
 gi|254824382|ref|ZP_05229383.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|254852182|ref|ZP_05241530.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|254931499|ref|ZP_05264858.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|255520160|ref|ZP_05387397.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]
 gi|290893960|ref|ZP_06556936.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|300764775|ref|ZP_07074765.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|67461796|sp|Q71ZA9|SYT_LISMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783526|sp|B8DHI9|SYT_LISMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516560|sp|C1KVK6|SYT_LISMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46881058|gb|AAT04355.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018536|gb|EAL09292.1| threonyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858]
 gi|217333564|gb|ACK39358.1| threonyl-tRNA synthetase [Listeria monocytogenes HCC23]
 gi|225876622|emb|CAS05331.1| threonyl-tRNA synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605487|gb|EEW18095.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL R2-503]
 gi|290556498|gb|EFD90036.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-071]
 gi|293583051|gb|EFF95083.1| threonyl-tRNA synthetase [Listeria monocytogenes HPB2262]
 gi|293593617|gb|EFG01378.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-194]
 gi|300514451|gb|EFK41508.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL N1-017]
 gi|307571140|emb|CAR84319.1| thrS [Listeria monocytogenes L99]
 gi|313608610|gb|EFR84472.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-208]
 gi|328465594|gb|EGF36823.1| threonyl-tRNA synthetase [Listeria monocytogenes 1816]
          Length = 640

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|294793964|ref|ZP_06759101.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
 gi|294455534|gb|EFG23906.1| threonine--tRNA ligase [Veillonella sp. 3_1_44]
          Length = 636

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 10/165 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  L     +          + ++ HSA+H+L  A+  +        G  I   G  +D+
Sbjct: 50  REELVDGSEVAFLTFEDEGGKHTLRHSASHILAQAVKRLWPEAKLAIGPAID-KGFYYDI 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                +T  +L  IE  ++ I+ +NLP+   +M R++AI    A      Y   +     
Sbjct: 109 DMEHILTPEDLGKIEKEMSRIVKENLPITKSVMPRQEAIEFFKAK--NEDYKVELIQDLP 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E      +S      LC G HV+STG++    +    SI     R
Sbjct: 167 EDAVISCYSQGDFIDLCAGPHVASTGKVKAFKL---QSIAGAYWR 208


>gi|46581046|ref|YP_011854.1| alanyl-tRNA synthetase family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601658|ref|YP_966058.1| threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
 gi|46450467|gb|AAS97114.1| alanyl-tRNA synthetase family protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120561887|gb|ABM27631.1| Threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
 gi|311234729|gb|ADP87583.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris RCH1]
          Length = 147

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+A H+L+  +    G     + + I P   + D       + AE + +E+ VN I+  
Sbjct: 9   MHTAEHVLNGVMVATFGCGRCFS-AHINPKKSKCDYHFDGVFSDAEARLVEERVNAILQS 67

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             PVV   ++RE+A        L     + VRV+SV     G H +  C G HV++T E+
Sbjct: 68  GQPVVETFLSREEAAVRFDLTRLPADAGETVRVISV-----GEHDACPCIGPHVANTLEV 122

Query: 706 MLLYIVSESSIRAGIRRIEA 725
             L I+S   +  G+ R+  
Sbjct: 123 GTLRIISHD-LNDGVLRLRF 141


>gi|307272094|ref|ZP_07553357.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
 gi|306511210|gb|EFM80217.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0855]
          Length = 660

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALEVFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITIYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|113954220|ref|YP_731070.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123031674|sp|Q0I902|SYT_SYNS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113881571|gb|ABI46529.1| threonyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 617

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 23/240 (9%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I HS +H++  A+  +        G   T  G  +D  + +P T A+LK+I+  +  I
Sbjct: 35  LKIRHSMSHVMAMAVQKLFPKAQVTIGPW-TEAGFYYDFDNPEPFTEADLKAIKKEMGKI 93

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSALCGGTHVSS 701
           I + LP+    ++RE+A     A     K     R+V  +     G     LC G HV++
Sbjct: 94  IGRKLPLERIEVSREEAERRIKAQNEPYKLEILERLVEPITLYTLGEQWWDLCAGPHVAN 153

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T E+         S+     R     G   ++ L          A  L            
Sbjct: 154 TSELNP-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWETADQLS----------- 196

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
               E+++ +    +R  +   +DL    I D      +        ++ +++   ++  
Sbjct: 197 ----EHKRRKEEALRRDHRRLGKDLDLFSIEDEAGAGLVFWHPRGARMRLLIEDFWRQAH 252


>gi|4928220|gb|AAD33470.1|AF130452_1 alanyl-tRNA synthetase [Flavobacterium hydatis]
          Length = 57

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 33/57 (57%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
          FTN+GM  FK  F G   P    +   QKC+R  GKHNDL+ VG    HHTFF + G
Sbjct: 1  FTNAGMAQFKEYFLGNGTPKSPRIADTQKCLRVSGKHNDLEEVGIDTYHHTFFALKG 57


>gi|291563461|emb|CBL42277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SS3/4]
          Length = 646

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 22/202 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  I        G  I  DG  +D+   +P+TS +L  IE  +  II
Sbjct: 69  ALRHTASHVMAQAIKRIWPETKLAIGPSI-ADGFYYDIDRDEPVTSDDLAKIEAEMKKII 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            + LP+    + R +AI+          Y   +     E      +       LC G H+
Sbjct: 128 KEALPLERFELPRAEAIS--LMKEKNEPYKVELIEDLPEDSIISFYKQGEFTDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T E+         +I     R               +++ L  + +     + ++   
Sbjct: 186 MNTKEVG--KAFKLMNIAGAYWR------------GSEKNKMLTRIYATAFAKKEDLDAY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           V  + EE +K       ++L L
Sbjct: 232 VT-MMEEAKKRDHRKLGKELGL 252


>gi|157413014|ref|YP_001483880.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
 gi|166987324|sp|A8G3W3|SYT_PROM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157387589|gb|ABV50294.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215]
          Length = 638

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 77/218 (35%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + ++  +V+           I HS  HL+ HA+  I        G  I  DG  +D+  
Sbjct: 50  PINSDSKVVIITSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPVI-EDGFYYDIFS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L  IE+ +N +I  N  V    +++++AI +         +  R+     E 
Sbjct: 109 EYRFTPEDLIKIENRINKLIKTNYDVEILQVSKKEAIKTFKER--DETFKLRIIEDIPEE 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
               ++       +C G HV +T  +    ++  S       R               ++
Sbjct: 167 GLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGS---YWR------------GNSEN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +       +  +   ++ I E  ++      K+
Sbjct: 212 ESLQRIYGTAWAKEKELNDYLKRIEEAEKRDHRKLGKK 249


>gi|227821825|ref|YP_002825795.1| threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
 gi|254783532|sp|C3MB49|SYT_RHISN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227340824|gb|ACP25042.1| ThrS; threonyl-tRNA synthetase [Sinorhizobium fredii NGR234]
          Length = 661

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 65  EDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVID-NGFYYDFAKNEPFTPDDLPVIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA+N P    + +R+ A    AA   G  Y   +     E +D  ++       
Sbjct: 124 KKMKEIIARNNPFSKEVWSRDKAKEVFAAK--GESYKVELVDAIPEGQDLKIYYQGDWFD 181

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H++STG+I     ++    +     R
Sbjct: 182 LCRGPHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|225026720|ref|ZP_03715912.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
 gi|224955955|gb|EEG37164.1| hypothetical protein EUBHAL_00972 [Eubacterium hallii DSM 3353]
          Length = 650

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 24/190 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L+  H+A+H+L  A+  +        G  I  DG  +D   + P+T  +L +IE  +  +
Sbjct: 68  LAFRHTASHVLAQAVKRLYPEAKLAIGPAI-EDGFYYDFDMA-PLTREDLDAIEKEMKKV 125

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I +N P+    + RE+AIA          Y   +     E      +       LC G H
Sbjct: 126 IKENPPIERYELPREEAIAY--MKEKDEPYKVELIEDLPEDATISFYKQGDFTDLCAGPH 183

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + S   I    + + S                A       ++ L  +       + ++  
Sbjct: 184 LMSVKPIKAFKLTASSG---------------AYWRGNENNKMLTRIYGTAYTKKADLEE 228

Query: 759 RVEEIWEEYR 768
           R++ + EE +
Sbjct: 229 RLKYL-EEIK 237


>gi|220928797|ref|YP_002505706.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999125|gb|ACL75726.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 635

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 10/145 (6%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L+  H+A+H+L  A+  +        G  I   G  +D    KP +  EL SIE  +  
Sbjct: 68  RLAYRHTASHVLAQAVKRLYPDAKLAIGPAIDT-GFYYDFEREKPFSIEELDSIEKEMEK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+ ++L +   ++ R +AI        G  Y   + +   + E+   +       LC G 
Sbjct: 127 IVKEDLKLERFVLPRNEAIK--LMEEKGEPYKAELIMDLPQGEEISFYKQGEFTDLCAGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           H++ TG +  + ++S   +     R
Sbjct: 185 HLTGTGRLKAVKLLS---VAGAYWR 206


>gi|114799933|ref|YP_761871.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
 gi|123027650|sp|Q0BXC2|SYT_HYPNA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114740107|gb|ABI78232.1| threonyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 657

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 25/223 (11%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + S+ +  D        I H A H+L  A+  +        G  I  DG  +D   
Sbjct: 50  PLEGDASVAIITDRDPEGLELIRHDAAHVLAQAVQELYPDTQVTIGPVID-DGFYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-VVSVE 682
            +P ++ +   IE  + +I+  + P+V  ++ +++AIA+  +  LG +Y  ++   +   
Sbjct: 109 KEPFSTDDFDKIEARMREIVDADYPIVREVLGKDEAIATFKS--LGEEYKAQIIDDIIPP 166

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            E   V+       LC G H+ STG++     ++              + G  A      
Sbjct: 167 GEQITVYRQGKWFDLCRGPHLPSTGKLPKAFKLMK-------------LAG--AYWRGDH 211

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKL 779
           ++E L+ +      ++ ++   +  + E E R  + + A+  L
Sbjct: 212 RNEMLQRMYGTAWANEKDLKDHLTRLEEAEKRDHRKLGAQLDL 254


>gi|58039289|ref|YP_191253.1| threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
 gi|73919795|sp|Q5FSP9|SYT_GLUOX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58001703|gb|AAW60597.1| Threonyl-tRNA synthetase [Gluconobacter oxydans 621H]
          Length = 645

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 11/197 (5%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + ++ S+             I H A H+L  A+ ++        G  I  DG  +D + 
Sbjct: 50  EISSDASVKFITRKDEDALEMIRHDAAHVLAEAVQSLWPETQVTIGPSI-KDGFYYDFSR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            KP T  +  +IE  + +I+A N P V  + +R+DAI        G  +  ++     E 
Sbjct: 109 EKPFTPEDFPAIEAKMREIVAANTPFVREVWDRDDAIRFFEEK--GEDFKAQLIQDLPED 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           E   ++       LC G H+ +TG++     ++    +     R +       R +    
Sbjct: 167 EQISIYRQGEWLDLCRGPHLRTTGDVGTAFKLM---RVAGAYWRGDHRNPMLTRIYGTAW 223

Query: 739 DEKLKSLASFLKVSQGN 755
            +K +  A  L++ +  
Sbjct: 224 RDKKELDAHLLRLEEAE 240


>gi|313902061|ref|ZP_07835474.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467670|gb|EFR63171.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 638

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 97/261 (37%), Gaps = 40/261 (15%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLG-----DTGCAIGDGIRLQITDVQKKAEGIFV 555
           IV E   G + E+    TP   E   Q+G     D   A  +G  + +    ++   + +
Sbjct: 2   IVVELPGGSRRELPRGITPL--EVAQQIGPRLARDAVAARWNGQVIDLNRPLEEDGRLEI 59

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                E G                  +    HS  HL+  A+  +        G  +  D
Sbjct: 60  LTFADEAG------------------REVYRHSTAHLMAQAVKRLWPEAQLAVGPPL-ED 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D+   +P+++ +L++IE  +  I+ ++LP+  R ++R++A+        G +Y   
Sbjct: 101 GFFYDIQTPRPLSTDDLEAIEQEMARIVQEDLPIRRRPVSRQEALDLFRQR--GERYKVE 158

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIE 724
           +     E E   V+       LC G H+ STG I    +   +            + RI 
Sbjct: 159 IIESIPEDEPLTVYEQGEFVDLCRGPHLPSTGRIKAFKLTGVAGAYWKGDEKGPMLTRIY 218

Query: 725 AITGQRARSHLMGQDEKLKSL 745
                 AR  L    ++L+  
Sbjct: 219 GTAFPSARE-LEEHLQRLEEA 238


>gi|126651397|ref|ZP_01723604.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126591926|gb|EAZ86009.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 643

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G      +  +  +  + ++ +           
Sbjct: 20  GTSTDDVALSISPGLR------KKAYAGKINGVLVDLKTPIEEDAAIAIITQDDAEALEI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL   A+  +        G  I   G  +D+    PIT+ +L +IE  +  IIA
Sbjct: 74  LRHSTAHLTAQAIKRLFPDVKLGIGPVID-GGFYYDIDSPTPITAEDLPAIEKEMKKIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL V  + ++R +A A      +G +Y   +       E   ++       LC G HV 
Sbjct: 133 ENLEVERKNVSRAEAQAMYEK--IGDEYKLELLEAIPADEQVSIYYQGEFFDLCRGIHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++S             + G  A       ++ L+ +       +  +   +
Sbjct: 191 STGKLREFKLLS-------------LAG--AYWRGNSDNKMLQRIYGTAFFKKEELKHHL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
            ++ EE ++       ++L+L
Sbjct: 236 -QMLEEAKERDHRKIGKELEL 255


>gi|150018038|ref|YP_001310292.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149904503|gb|ABR35336.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 635

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 25/222 (11%)

Query: 565 LRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L+    + +LT D +   ++   HS +H++  A+  I        G  I  +G  +D   
Sbjct: 51  LKNNDEVNILTYDDEKAVEVIR-HSTSHVMAQAVKRIYKDSKLAIGPAIN-NGFYYDFDI 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +++ +L  IE  +N II +NL      ++R++AI        G  Y   +     E 
Sbjct: 109 ENSLSNEDLDKIEAEMNKIIDENLSFERIDISRDEAIK--LMEEKGETYKVELIKDLPEA 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E   ++       LC G H+ ST  I    ++S   +     R               ++
Sbjct: 167 EKISLYKQGDYIDLCRGPHIPSTKYIKAFKLLS---VAGAYWR------------GNEKN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           + L+ +      S+  +   +  + EE +K       ++L+L
Sbjct: 212 KMLQRVYGVAFSSKKELEVHLHNL-EEAKKRDHRKLGKELKL 252


>gi|304403794|ref|ZP_07385456.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304346772|gb|EFM12604.1| threonyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 637

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 20/217 (9%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDV 621
            +  + ++ L T+D Q  R +   HS  H++  A+  +  +  V      +  DG  +D+
Sbjct: 51  PIEQDSAVELVTLDSQLGRDIHR-HSTAHVMAQAIKRLFPNQSVKLGIGPVIEDGFYYDI 109

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRV 678
             +KP++S +L +IE  +N II +NLP+V R ++RE+A+ +        K     D    
Sbjct: 110 DIAKPLSSEDLVAIEYEMNHIIGENLPIVRRAVSREEAVQTFEECEEPLKLELIRDLPAD 169

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
             +   + G  S  LC G H+ STG I    ++    +     R     G      L   
Sbjct: 170 AVITIYEQGEFSD-LCRGPHLPSTGRIKAFKLL---HVAGAYWR-----GDSNNKVLQR- 219

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEE-YRKLQLIH 774
              +   A   K      + R+EE  +  +RKL    
Sbjct: 220 ---IYGTAFPKKAQLDEHLHRIEEAKKRDHRKLGKEL 253


>gi|123435193|ref|XP_001308954.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121890658|gb|EAX96024.1| hypothetical protein TVAG_369340 [Trichomonas vaginalis G3]
          Length = 148

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 6/144 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+  H+L+  +  I     S  G+ +     + D   ++ +T  E K IE+ VN ++A
Sbjct: 9   PMHTTEHILNRTMDNIFKCGRSI-GTHLEKKKSKCDYPLNRDLTPEEKKLIENTVNGVLA 67

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NL V    +   +A      + L     D      +     G + +  C G HV+ TG+
Sbjct: 68  KNLEVKAIFLPPAEAAKLVDISKLPEGATD----ADIRIIQIGDYDNCACIGPHVAKTGD 123

Query: 705 I-MLLYIVSESSIRAGIRRIEAIT 727
           I     I S S  + GI RI    
Sbjct: 124 IKGRFKITSTSLEQNGICRIRWTC 147


>gi|160936998|ref|ZP_02084362.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440188|gb|EDP17935.1| hypothetical protein CLOBOL_01887 [Clostridium bolteae ATCC
           BAA-613]
          Length = 636

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 10/154 (6%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            ++        +I H+A+H+L  A+  +        G  I  DG  +D       T  +L
Sbjct: 60  GSVQEAEDELRAIRHTASHVLAQAVKRLYPDAKLAIGPAID-DGFYYDFDREGGFTPEDL 118

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
           + +E  +  I+ +NLPV   ++ R +A+        G  Y   +     E E    +   
Sbjct: 119 EKLEAEMAKIVKENLPVKPFVLPRAEAVRF--MEEKGEPYKVELIEDLPEEETISFYQQG 176

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               LC G H+  T  +    + S   I     R
Sbjct: 177 EFVDLCAGPHIMYTKGVKAFKLTS---IAGAYWR 207


>gi|304436955|ref|ZP_07396918.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369906|gb|EFM23568.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 639

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 10/146 (6%)

Query: 582 QLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + ++ H+A H++  A+  +    HV         +G  +D      +T A+L+ IE  + 
Sbjct: 68  RHALRHTAAHVMAQAVKRLYPESHVQLAIGPAIENGFYYDFDMEHQLTDADLRDIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ +NLP+V R + R +AIA       G  Y   +     E E   +++      LC G
Sbjct: 128 KIVKENLPLVRREIPRAEAIALF--REKGENYKVELIEDLPEDEVISLYTQGEFTDLCAG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV STG++    +    S+     R
Sbjct: 186 PHVVSTGKVKAFKL---QSVAGAYWR 208


>gi|88608148|ref|YP_506185.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
 gi|123763729|sp|Q2GEB1|SYT_NEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88600317|gb|ABD45785.1| threonyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama]
          Length = 637

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H   H++  A+  +        G  I  DG  +D +     + ++ + IE+ + +II 
Sbjct: 74  LRHDCAHVMAQAVQELYPETKLGIGPVID-DGFYYDFSTPIAFSDSDFEKIEEKIREIIQ 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  ++    +R+DA++       G KY   +       E   ++       LC G H  
Sbjct: 133 RNYRIIREEWSRDDAVSFFQKK--GEKYKVELISRIPPEEKISIYKQGDFIDLCRGPHAP 190

Query: 701 STGEIMLLYIVSES 714
           STG +    ++  S
Sbjct: 191 STGWLKHFKLLKVS 204


>gi|325265785|ref|ZP_08132472.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
 gi|324982768|gb|EGC18393.1| threonine--tRNA ligase [Kingella denitrificans ATCC 33394]
          Length = 637

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  DG  +D+   KP T  ++K+IE+ +  +I 
Sbjct: 71  IRHSCAHLVGHAVKQLFPNAKMVIGPVI-EDGFYYDIAAEKPFTPEDMKAIEERMKQLIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
           Q+  V+ +++ R + I        G  Y  R+     E  + G++       +C G HV 
Sbjct: 130 QDYDVIKKMLPRAEVIEIFKQR--GEDYKLRLVDDMPEVTEMGMYFHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A       +E+L+ +      S+  +   +
Sbjct: 188 NTRFLKNFKLTKMSG---------------AYWRGDSNNEQLQRIYGTAWASKDELKAYI 232

Query: 761 EEIWEEYRK 769
             I E  ++
Sbjct: 233 TRIEEAEKR 241


>gi|221320079|ref|ZP_03601373.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
          Length = 643

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      I  R  +  + ++ +  +        
Sbjct: 20  GTTTEDIAASISPGLK------KKSLAGKLNGKEIDLRTPINEDGTVEIITEGSEEGLQI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL   +  I    V      +  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSAAHLLAQTIKRIY-KDVKFGVGPVIENGFYYDVEMDEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            NLP+V + ++RE+A A    A +G      +     E E   ++       LC G HV 
Sbjct: 133 ANLPIVRKEVSREEAKARF--AEIGDDLKLELLDAIPEGETVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG+I    ++S             + G  A      +++ L+ +       + ++   +
Sbjct: 191 STGKIKEFKLLS-------------LAG--AYWRGDSKNQMLQRVYGTAFFKKADLEEHL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
             + EE ++       ++L+L
Sbjct: 236 -RMLEEAKERDHRKLGKELKL 255


>gi|254429307|ref|ZP_05043014.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
 gi|196195476|gb|EDX90435.1| threonyl-tRNA synthetase [Alcanivorax sp. DG881]
          Length = 638

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 78/201 (38%), Gaps = 13/201 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +    ++ +     +     I H A H++  A+  +        G  IT +G  +D   
Sbjct: 51  PIDDGATVEIITRETDEALELIRHDAAHVMAEAVQELFPDTQVTIGPTIT-NGFYYDFHR 109

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P T  +LK+IE  + DI+ +N  +   + +R++A+A       G ++   +       
Sbjct: 110 DTPFTPDDLKTIEKRMQDIVRRNEEIRREVWDRDEAVAFFLEK--GEEFKAEIIRELPAD 167

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIML-LYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           ++  ++       LC G H+ ST ++     ++    +     R +A   Q  R +    
Sbjct: 168 QEVSLYRQGEFIDLCRGPHLPSTSKLGDGFKLMK---VAGAYWRGDANNAQLQRIYGTAW 224

Query: 739 DEKLKSLASFLKVSQGNVVGR 759
            +K K L + LK        R
Sbjct: 225 RDK-KELNAHLK-QIEEAEKR 243


>gi|225352131|ref|ZP_03743154.1| hypothetical protein BIFPSEUDO_03746 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157378|gb|EEG70717.1| hypothetical protein BIFPSEUDO_03746 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 677

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 48  ELHDGDVVEPIALDSEDGLAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTK--YNDR 675
              P T  +LK IE  +  II  +     R++  E+A+A          L+  K  + D 
Sbjct: 106 VETPFTPDDLKEIEKRMQRIIKSSQSFRRRVVTEEEALAEESDQPYKIELIKDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 166 EAATEISGKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 219

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 220 --GSEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 254


>gi|331001642|ref|ZP_08325165.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330413363|gb|EGG92730.1| threonyl-tRNA synthetase [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 651

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 19/175 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA+H+L  A+  +        G  I  +G  +D  H +P +  +L  +E  +  II 
Sbjct: 70  IRHSASHVLAEAVKRVFPEAKLAIGPSI-AEGFYYDFDH-EPFSREDLDKLEAEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +    + RE+AI        G  Y   +     E E    +       LC G H+ 
Sbjct: 128 EGAHIEKFELPREEAIKF--MKEKGEPYKVELIQDLPEDEKISFYKQGDFTDLCAGPHLQ 185

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
            T +I    ++S S       S +A ++RI       A +     +  LK L   
Sbjct: 186 RTKDIKAFKLISSSMAYWRGDSNKAKLQRIYGT----AYNSKEELEAHLKHLEDI 236


>gi|312951108|ref|ZP_07770013.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|310630884|gb|EFQ14167.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0102]
 gi|315154152|gb|EFT98168.1| threonyl-tRNA synthetase [Enterococcus faecalis TX0031]
          Length = 660

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+ + +    T  + +   +L D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENIIMSIHIT--FPDGAVKLFDSGITTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +L +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDLPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITVYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|299535482|ref|ZP_07048804.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
 gi|298729243|gb|EFI69796.1| threonyl-tRNA synthetase 1 [Lysinibacillus fusiformis ZC1]
          Length = 643

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 98/261 (37%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G      +  +  +  + ++ +           
Sbjct: 20  GTSTDDVALSISPGLR------KKAYAGKINGVLVDLKTPIEEDATIAIITQDDEEALEI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL   A+  +        G  I   G  +D+    PIT+ +L +IE  +  IIA
Sbjct: 74  LRHSTAHLTAQAIKRLFPDAKLGIGPVI-EGGFYYDIDSPTPITAEDLPAIEKEMKKIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL V  + ++R +A A      +G +Y   +       E   ++       LC G HV 
Sbjct: 133 ENLEVERKNVSRAEAQALYE--EIGDEYKLELLEAIPADEQVSIYYQGEFFDLCRGIHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++S             + G  A       ++ L+ +       +  +   +
Sbjct: 191 STGKLREFKLLS-------------LAG--AYWRGNSDNKMLQRIYGTAFFKKEELKHHL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
            ++ EE ++       ++L+L
Sbjct: 236 -QMLEEAKERDHRKIGKELEL 255


>gi|293382457|ref|ZP_06628392.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|293387159|ref|ZP_06631720.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|312906512|ref|ZP_07765514.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|312910456|ref|ZP_07769302.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
 gi|291080141|gb|EFE17505.1| threonine--tRNA ligase [Enterococcus faecalis R712]
 gi|291083430|gb|EFE20393.1| threonine--tRNA ligase [Enterococcus faecalis S613]
 gi|310627455|gb|EFQ10738.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 512]
 gi|311289228|gb|EFQ67784.1| threonyl-tRNA synthetase [Enterococcus faecalis DAPTO 516]
          Length = 660

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH 557
                + + G+   +    T  + +   +  D+G    D  + +  +  +K   G F   
Sbjct: 2   KRFKSKKLKGENFIMSIHIT--FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGV 59

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            I     +  + SL +           + HS+ HL+ +AL  +  +     G  I     
Sbjct: 60  LIDLDRPIVEDGSLEIVTPDHEDALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFY 119

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   P+T+ +  +IE  +  I+ +N P+V + ++R +A+   A      +   D  
Sbjct: 120 YDTDNGESPVTAEDFPAIEAEMMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLP 179

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   D G     LC G HV STG I +  ++S   +     R
Sbjct: 180 EDEIITIYDQGDFVD-LCRGVHVPSTGRIQVFKLLS---VAGAYWR 221


>gi|220928798|ref|YP_002505707.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
 gi|219999126|gb|ACL75727.1| threonyl-tRNA synthetase [Clostridium cellulolyticum H10]
          Length = 645

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 23/204 (11%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L+  H+A+H+L  A+  +  +     G  I  +G  +D    K     +L  IE  +  
Sbjct: 68  RLAYRHTASHVLAQAVKRMFPNVKLAIGPAI-ENGFYYDFDTDKNFAPEDLAKIEKEMEK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           II +++ +    + R++AI        G  Y   +     E E+   +       LC G 
Sbjct: 127 IIKEDISLERFTLPRDEAIKF--MEEKGEPYKIELIKELPEGEEISFYKQGDFVDLCAGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ STG++  + ++S     AG           A      +++ L+ +       +  + 
Sbjct: 185 HLLSTGKLKAVKLMS----AAG-----------AYWRGNEKNKMLQRIYGTAFPKKSELE 229

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL 781
             V ++ EE +K       R+L+L
Sbjct: 230 EYVTKL-EEAKKRDHNKLGRELEL 252


>gi|310767522|gb|ADP12472.1| threonyl-tRNA synthetase [Erwinia sp. Ejp617]
          Length = 642

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 77/191 (40%), Gaps = 12/191 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ +           I HS  HLL HA+  +        G  I  +G  +DV  
Sbjct: 50  PIAADASVAIITAKDEAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDL 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            + +T  +++ +E  ++ +   N  V+ + ++ ++A  + AA   G  Y   +   ++ +
Sbjct: 109 DRTLTQEDIEQLEKRMHQLAETNYDVIKKNVSWQEARDAFAAR--GENYKMTILDENISH 166

Query: 684 ED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +D  G++       +C G HV +        +     I     R ++      R +    
Sbjct: 167 DDRPGLYHHQEYVDMCRGPHVPNMRFCHHFKL---QKISGAYWRGDSSNKMLQRIYGTAW 223

Query: 739 DEKLKSLASFL 749
            +K K LA++L
Sbjct: 224 ADK-KQLAAYL 233


>gi|323345550|ref|ZP_08085773.1| alpha-amylase [Prevotella oralis ATCC 33269]
 gi|323093664|gb|EFZ36242.1| alpha-amylase [Prevotella oralis ATCC 33269]
          Length = 718

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  N+      H+A HLL+  +  + G   S N            +   KP    E K+I
Sbjct: 570 NDHNKEDFPPAHTAEHLLNQTMVRMFGCERSNNAHIERKKSKITYILDHKPDRKEE-KAI 628

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED +N++I ++LPV   +++R+          L    +D +R+V +     G +   LC 
Sbjct: 629 EDKMNELIQEDLPVTYEVVDRDHLPTDVKTDRLPADASDMLRLVRI-----GDYDVCLCI 683

Query: 696 GTHVSSTGEIMLLYIVSES-SIRAGIRRIEAIT 727
           G HV ST +I    I+  +        RI    
Sbjct: 684 GKHVRSTSQIGRFEILGTNWDEAKHAYRIRFKV 716


>gi|254527233|ref|ZP_05139285.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
 gi|221538657|gb|EEE41110.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202]
          Length = 638

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +V+           I HS  HL+ HA+  I        G  I  DG  +D+  
Sbjct: 50  PINRDSKVVIITSKDKEGIEIIRHSFAHLIGHAVKQIYSDIKMAIGPVI-EDGFYYDIFS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L  IE+ +N +I  N  V    +++++AI +         +  R+     E 
Sbjct: 109 EYRFTPEDLIKIENRINKLIKTNYDVEILQVSKKEAIKTFKER--DETFKLRIIEDIPEE 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
               ++       +C G HV +T  +    ++  S       R               ++
Sbjct: 167 GLINLYKHEEYIDMCRGPHVPNTRHLRHFKLLKLSGS---YWR------------GNSEN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +       +  +   ++ I E  ++      K+
Sbjct: 212 ESLQRIYGTAWAKEKELNNYLKRIEEAEKRDHRKLGKK 249


>gi|306822719|ref|ZP_07456097.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|304554264|gb|EFM42173.1| threonine--tRNA ligase [Bifidobacterium dentium ATCC 27679]
          Length = 708

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 79  ELHDGDVVEPIALDSEDGVAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R+++ ++A+A  A              + D 
Sbjct: 137 VVEPFTPEDLKDIEKRMQRIIKSSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDP 196

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 197 EAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 250

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 251 --GNEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 285


>gi|171742906|ref|ZP_02918713.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
 gi|171278520|gb|EDT46181.1| hypothetical protein BIFDEN_02023 [Bifidobacterium dentium ATCC
           27678]
          Length = 708

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 79  ELHDGDVVEPIALDSEDGVAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 136

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R+++ ++A+A  A              + D 
Sbjct: 137 VVEPFTPEDLKDIEKRMQRIIKSSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDP 196

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 197 EAATEISEKELSFYDNIDRDGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 250

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 251 --GNEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 285


>gi|317486706|ref|ZP_07945523.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922089|gb|EFV43358.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 150

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 14/155 (9%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+A H+L+  +  + G   S + S +  D  + D    +P+  AE   +E  +N+++AQ
Sbjct: 1   MHTAEHVLNQTMVRMFGCGRSFS-SHLNADKSKCDYHFPRPLEDAEASELERRINEVLAQ 59

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           ++PV T ++ RE+A        L          + V     G +    C G HV +T E+
Sbjct: 60  HMPVRTEMLPREEAGKLVDLGRLPAHLEGE-EELMVRIVTVGDYDICPCIGEHVENTSEV 118

Query: 706 MLLYIVS---------ESSIRAGIRRIEAITGQRA 731
               +VS         E    AG  RI     + A
Sbjct: 119 GAFRLVSHDFTPPQGDEE---AGRLRIRFKLKKNA 150


>gi|270157302|ref|ZP_06185959.1| putative alanyl tRNA synthetase [Legionella longbeachae D-4968]
 gi|289164313|ref|YP_003454451.1| alanyl tRNA synthetase [Legionella longbeachae NSW150]
 gi|269989327|gb|EEZ95581.1| putative alanyl tRNA synthetase [Legionella longbeachae D-4968]
 gi|288857486|emb|CBJ11318.1| putative alanyl tRNA synthetase [Legionella longbeachae NSW150]
          Length = 211

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 31/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++ + VS  +  ++F++T  ++ +GGQ  D     G    L++     + EG  +++ +
Sbjct: 13  QLMTKVVSVNESRLLFEETIGFSFSGGQESDRVTVNG----LEV--THSELEGDLIYYTL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                +    ++++ ID+  R +L   H A  L+   +   +     + G+ I  +  R 
Sbjct: 67  PSGHGIAKGDAVLMVIDFTRRYKLMRLHFAAELILELVQRTI--TARKIGAHIAENKARI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D ++   I+ A  + I    N IIA +  ++T   +                 N + R  
Sbjct: 125 DFSYQHNIS-AIFEKILHEYNKIIATDKRIITGFSDI----------------NRQKRYW 167

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            ++       S  LCGGTHV ST E+  +  +   +I     RIE
Sbjct: 168 EIDG-----FSRVLCGGTHVKSTSEVGYIT-LKRLNIGKNKERIE 206


>gi|311069390|ref|YP_003974313.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
 gi|310869907|gb|ADP33382.1| threonyl-tRNA synthetase [Bacillus atrophaeus 1942]
          Length = 643

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 13/195 (6%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      I  R  +  + ++ +  +        
Sbjct: 20  GTTTEDIAASISPGLK------KKSLAGKLNGQEIDLRTPINEDGTVEIITEGSEEGLQI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I    V      +  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIY-KDVKFGVGPVIENGFYYDVEMEEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            NLP+V + ++RE+A A    A +G      +     E E   ++       LC G HV 
Sbjct: 133 ANLPIVRKEVSREEAKARF--AEIGDDLKLELLDAIPEGETVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESS 715
           STG+I    ++S + 
Sbjct: 191 STGKIKEFKLLSLAG 205


>gi|281357061|ref|ZP_06243551.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281316619|gb|EFB00643.1| threonyl-tRNA synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 591

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 15/174 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I HSA H++  A+  +        G   T +G  +D      + + +LK+IE  +  +I
Sbjct: 23  TIRHSAAHVMAAAVQQLYPDAKFDIGPS-TENGFYYDFDMEHRLVTEDLKAIEKAMKKLI 81

Query: 644 AQNLPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            + LP     MNR DA    + A       +  D      + +   G     LC G HV+
Sbjct: 82  GRKLPFECFEMNRADAEKMLSEAGQTYKLERLADIPEDAKITFYKTGDFVD-LCRGPHVA 140

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           ++GEI  + ++S +            ++RI      + +  +++L  Q+E  K 
Sbjct: 141 NSGEIGAVKLLSIAGSYFRGDEKNKMLQRIYGTAFASEEDLQAYLKQQEEAAKR 194


>gi|304317243|ref|YP_003852388.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778745|gb|ADL69304.1| threonyl-tRNA synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 634

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 11/155 (7%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ +++   H+++H++  A+  +        G  I  +G  +D    +P T  +
Sbjct: 58  ILTFDDEDGKKI-YWHTSSHIMAQAIKRLYKDVKLTIGPAID-NGFYYDFDVDEPFTVDD 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              IE+ +N II ++L +   ++ RE+AI        G  Y   +     E      +  
Sbjct: 116 FSKIEEEMNKIIKEDLKLERFVLPREEAIKF--MDEKGEPYKVELIKDLPEDAVISFYRQ 173

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                LC G H+ STG +  + ++S   +     R
Sbjct: 174 GEFTDLCAGPHLPSTGMVKSIKLLS---VAGAYWR 205


>gi|262371491|ref|ZP_06064806.1| alanyl-tRNA synthetase domain-containing protein [Acinetobacter
           johnsonii SH046]
 gi|262313577|gb|EEY94629.1| alanyl-tRNA synthetase domain-containing protein [Acinetobacter
           johnsonii SH046]
          Length = 212

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 69/216 (31%), Gaps = 36/216 (16%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
           +       EV   +TPF+ + GGQ  D G        +Q+  V    + I  + A     
Sbjct: 21  QISKDGLFEVRLSETPFHPQGGGQPSDIGTIYN----VQVMHVTMHEQDIIHYCANEVPL 76

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +         +D   R   S  HSA HL+ H +  + G   +   +   P+  +     
Sbjct: 77  GIAL-----AQVDVTKRNYFSRLHSAGHLIAHIV-QLFG--WTPIKAQHWPNDAKVQFIE 128

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              I   +  S++   N  I Q         +                         V +
Sbjct: 129 GDNIKDVDSASVQKICNQYIQQAFATQISQNS--------------------NGYREVGF 168

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            D G      CGGTHV +  EI  + I  E   + G
Sbjct: 169 GDLGAF---PCGGTHVKNLSEINQINIT-EFKFKKG 200


>gi|257087763|ref|ZP_05582124.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
 gi|256995793|gb|EEU83095.1| threonyl-tRNA synthetase [Enterococcus faecalis D6]
          Length = 645

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 6/204 (2%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D+G    D  + +  +  +K   G F    I     +  + SL +      
Sbjct: 7   FPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEIVTPDHE 66

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                + HSA HL+ +AL  +  +     G  I             P+T+ +L +IE  +
Sbjct: 67  DALGILRHSAAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLPAIEAEM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTH 698
             I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G H
Sbjct: 127 MKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVD-LCRGVH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG I +  ++S   +     R
Sbjct: 186 VPSTGRIQVFKLLS---VAGAYWR 206


>gi|227498537|ref|ZP_03928681.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903993|gb|EEH89911.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 636

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 22/199 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +I H+A+H++  A+  +        G  I   G  +D+      T  +LK+IE  +  I
Sbjct: 71  HAIRHTASHVMAQAIQHLFPGTKFAIGPAI-EKGFYYDLDSEHVFTPDDLKAIEKEMAKI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + QNLPVV   + R +A+A   A      Y   +     E      +S      LC G H
Sbjct: 130 VKQNLPVVRHEIPRAEALAKFKA--ENEPYKVELIEDLPEDAVISTYSQGDFTDLCAGPH 187

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
             STG +    ++S   I     R               +++ L+ +      S+ ++  
Sbjct: 188 CPSTGRVKAFKLMS---IAGAYWR------------GDEKNKMLQRIYGTAFASKEDLEA 232

Query: 759 RVEEIWEEYRKLQLIHAKR 777
            +  + E  ++      K+
Sbjct: 233 YLHMLEEAEKRDHRKLGKQ 251


>gi|254470004|ref|ZP_05083408.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
 gi|211960315|gb|EEA95511.1| threonyl-tRNA synthetase [Pseudovibrio sp. JE062]
          Length = 648

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + T  ++ +      R    I H A H++  A+  +        G  I  +G  +D   
Sbjct: 50  PIETNAAIEIVTRDDPRALELIRHDAAHVMAEAVQELWPETQVTIGPVI-ENGFYYDFKR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P T+ +L  IE  +  II +N      I +R +A    AA   G  Y   +     E 
Sbjct: 109 DTPFTTEDLPKIEKKMQQIIQRNAKFTKEIWSRNEAKDYFAAK--GEDYKVELVDAIPED 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           E   ++       LC G H++STG+I     ++    +     R +A
Sbjct: 167 ETVKIYKQGEWLDLCRGPHMASTGQIGQAFKLMK---VAGAYWRGDA 210


>gi|257421590|ref|ZP_05598580.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
 gi|257163414|gb|EEU93374.1| threonyl-tRNA synthetase [Enterococcus faecalis X98]
          Length = 645

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 79/204 (38%), Gaps = 6/204 (2%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D+G    D  + +  +  +K   G F    I     +  + SL +      
Sbjct: 7   FPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEIVTPDHE 66

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                + HSA HL+ +AL  +  +     G  I             P+T+ +L +IE  +
Sbjct: 67  DALGILRHSAAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLPAIEAEM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTH 698
             I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G H
Sbjct: 127 MKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVD-LCRGVH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG I +  ++S   +     R
Sbjct: 186 VPSTGRIQVFKLLS---VAGAYWR 206


>gi|330428483|gb|AEC19817.1| threonyl-tRNA synthetase [Pusillimonas sp. T7-7]
          Length = 648

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL +A+ ++        G  I  +G  +D ++ +P T  +L++IE  + ++  
Sbjct: 76  IRHSTAHLLAYAVKSLFPDAQVTIGPVID-NGFYYDFSYKRPFTPEDLEAIEKKMAELAK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  V      R+DA+       +G  Y   +       E   ++       LC G HV 
Sbjct: 135 KDEVVTREEWLRDDAVEYF--KGIGEHYKAEIIASIPSNEAISLYREGDFIDLCRGPHVP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++ +  ++    +     R
Sbjct: 193 STGKLKVFKLMK---VAGAYWR 211


>gi|254481727|ref|ZP_05094970.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
 gi|214037856|gb|EEB78520.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2148]
          Length = 640

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 21/232 (9%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G+     +    I+  + +L +  +        I HS  HLL  A   +        G  
Sbjct: 38  GVVDGREVDTSHIVEADAALAIITERDEAGLEVIRHSTAHLLAQATQQLFPGIQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  DG  +D       T  +L+ IE  + +I+ Q+L V   + +RE A+       +G +
Sbjct: 98  I-EDGFFYDFATGHNFTPEDLEKIEQRMEEIVQQDLTVERIVCSREKAVEIF--RNMGER 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y  ++       E+  ++       LC G HV STG++    +     +     R     
Sbjct: 155 YKVQIIEELPADEEISIYQQGAWMDLCRGPHVPSTGKLKAFKLTK---VAGAYWR----- 206

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           G      L        +    LK      + R+EE   E R  + I  K  L
Sbjct: 207 GDSNNEMLQRVYGTAWANKKQLK----QYLNRIEE--AEKRDHRKIGKKLDL 252


>gi|134299469|ref|YP_001112965.1| threonyl-tRNA synthetase [Desulfotomaculum reducens MI-1]
 gi|189083605|sp|A4J4Y7|SYT_DESRM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134052169|gb|ABO50140.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Desulfotomaculum reducens MI-1]
          Length = 635

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 14/177 (7%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +     L+ + +L L        +    HS  H+L  A+  +        G  
Sbjct: 38  GKVNGKIVDLEYPLKEDAALELLTFNDEEGKTVYRHSTAHVLAQAVKRLFPDAKLAIGPA 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  DG  +D    +P T A+L+ IE+ +N II +++P     ++RE+A+           
Sbjct: 98  IQ-DGYYYDFDVEQPFTPAQLERIEEEMNKIIKEDIPFKRVELSREEALEHFKKQ--DEI 154

Query: 672 YNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           Y   +     E      Y+ G      LC G HV S      L  +   SI     R
Sbjct: 155 YKIELITDLPEDAVISCYQQGDFDD--LCAGPHVPS---TGRLKSLKLMSIAGAYWR 206


>gi|124516423|gb|EAY57931.1| Threonyl-tRNA synthetase [Leptospirillum rubarum]
          Length = 617

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA H L  A+  +  S     G   T +G  +D  + +P T  +L+ IE+ +  +I
Sbjct: 42  ALRHSAAHTLAQAVKKLYPSAQVGVGPA-TEEGFYYDFRYERPFTPEDLERIENEMKSLI 100

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             +LP+V + ++R +A            +   +     E  +  V+       LC G HV
Sbjct: 101 RSSLPIVRKPVSRGEAEKLFRER--NEPFKLELIQGIPEDAEITVYEQGEFVDLCRGPHV 158

Query: 700 SSTGEIMLLYIVSESS-IRAGIR------RIEAIT---GQRARSHLMGQDEKLKS 744
           SSTGEI  + ++S SS    G+       RI        +    +L  Q+E  + 
Sbjct: 159 SSTGEIPAVRLLSTSSAYWKGVESNPSLQRIYGTAFHSEKELEEYLRQQEEIQRR 213


>gi|330995755|ref|ZP_08319652.1| threonine/alanine tRNA ligase second additional domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574485|gb|EGG56050.1| threonine/alanine tRNA ligase second additional domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 160

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
            + ++  N+ +    H+  H+L+  +  + G   S N + I     + +   +   T  +
Sbjct: 6   EVALNAHNKLEYPPMHTCEHILNQTMVRMFGCERSGN-AHIERKKSKINYDLADEPTEEQ 64

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           +  I   VN++IA +LPV    ++R+    +     L     D +R+V V     G +  
Sbjct: 65  VAEIARKVNEVIAADLPVTYAYVSRDAVPDNVPLDKLPDAAEDTLRLVRV-----GDYDV 119

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
             C G HV  T +I   +I S +S + G  RI   
Sbjct: 120 CACIGAHVEHTAQIGRFHINS-TSYKDGQFRIVFK 153


>gi|294667581|ref|ZP_06732796.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602701|gb|EFF46137.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 634

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y      D    ++            +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSEDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|254491441|ref|ZP_05104620.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224462919|gb|EEF79189.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 641

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 7/168 (4%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      +    ++  +  + +  +        I HS +HL+  A+  +        G  
Sbjct: 38  GKVNGTLVDTSHVVEQDADVAIVTERDEEGLDIIRHSTSHLMAQAVKQLYPEAQVTIGPV 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I  DG  +D ++ +  T  +L  I+  + +I+ Q+LPV    + R+  I       +G  
Sbjct: 98  ID-DGFYYDFSYPEAFTPDDLNKIQKRMEEIVKQDLPVAREEITRDAGIEMF--RDMGEI 154

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
           Y   +     + E   V+       LC G HV +TG++    ++  + 
Sbjct: 155 YKAEILEDIPKDEILSVYRQGDFVDLCRGPHVPNTGKLKAFKLMKLAG 202


>gi|21243325|ref|NP_642907.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|25453288|sp|Q8PJE1|SYT_XANAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21108867|gb|AAM37443.1| threonyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 634

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y      D    ++            +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSEDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|256752544|ref|ZP_05493400.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748610|gb|EEU61658.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus CCSD1]
          Length = 76

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885
           ++  S  +KA  + + T+D++ +  N   + +   K +  G GGGRP MAQ  G N +K 
Sbjct: 1   VLASSTPEKAIFVGMATKDVVQKGINMGAVIKEVCK-VSEGNGGGRPDMAQGTGKNPSKV 59

Query: 886 DQAIAGVASFLKK 898
           ++A+      +K+
Sbjct: 60  EEALNKAIDIVKE 72


>gi|283456070|ref|YP_003360634.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
 gi|283102704|gb|ADB09810.1| ThrS Threonyl-tRNA synthetase [Bifidobacterium dentium Bd1]
          Length = 677

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 48  ELHDGDVVEPIALDSEDGVAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R+++ ++A+A  A              + D 
Sbjct: 106 VVEPFTPEDLKDIEKRMQRIIKSSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 166 EAATEISEKELSFYDNIDRDGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 219

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 220 --GNEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 254


>gi|309800860|ref|ZP_07694992.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|308222396|gb|EFO78676.1| threonine--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 677

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 48  ELHDGDVVEPIALDSEDGVAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R+++ ++A+A  A              + D 
Sbjct: 106 VVEPFTPEDLKDIEKRMQRIIKSSQSFRRRVVSEQEALAEEADQPYKLELIKDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 166 EAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 219

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 220 --GNEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 254


>gi|182419627|ref|ZP_02950872.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237665561|ref|ZP_04525549.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376517|gb|EDT74094.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237658508|gb|EEP56060.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 636

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 23/221 (10%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L+    + +  D   +    I HS+ H++  A+  +  +     G  I  +G  +D    
Sbjct: 52  LKNNDEVNILSDDSEKAVEVIRHSSAHIMAQAVKRLYKNAKLAIGPSI-ANGFYYDFDMD 110

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
            PI   +L+ IE  +N I+ +NL      +++E+A+           Y   +     E E
Sbjct: 111 TPIIKEDLEKIEKEMNKIVKENLKFERIDVSKEEALKI--MKDNDEIYKVELINDLPEGE 168

Query: 685 DGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
              ++       LC G H+ ST       ++S   +     R               +++
Sbjct: 169 KISLYKQGDYIDLCRGPHIPSTKYAKAFKLIS---VAGAYWR------------GNEKNK 213

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            L+ +      +   +   +  + EE +K       ++L+L
Sbjct: 214 MLQRVYGVAFSNLKELEIHLNNL-EEAKKRDHRKLGKELKL 253


>gi|33861154|ref|NP_892715.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|73919818|sp|Q7V287|SYT_PROMP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33639886|emb|CAE19056.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 638

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +V+           I HS  HL+ HA+  +  +     G  I  +G  +D+  
Sbjct: 50  PIDNDSKVVIITSRDKDGIEIIRHSFAHLIGHAVKQLYPNIKMAIGPVID-NGFYYDIFS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA------LLGTKYNDRVR 677
               T  +L  IE+ +N++I +N  V    + +++AI +           +  +  D   
Sbjct: 109 EYRFTPEDLIKIENRINNLIKKNYDVEILQVTKKEAIKTFQERDETFKLRIIEEIPDEGL 168

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
           +   ++E+       +C G HV +T  +    ++  S       R               
Sbjct: 169 INLYKHEE----YIDMCRGPHVPNTCHLRHFKLLKLSGS---YWR------------GNS 209

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           ++E L+ +       +  +   ++ I E  ++      K+
Sbjct: 210 ENESLQRIYGTAWAKEKELNDYLKRIEEAEKRDHRKLGKK 249


>gi|255024220|ref|ZP_05296206.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J1-208]
          Length = 279

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I+ 
Sbjct: 30  LRHSTAHLMAQALKRLYPDVKFGVGPAIDT-GFYYDIDTEAVISDESLVEIEKEMQKIVR 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G HV 
Sbjct: 89  ENIPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVHVP 146

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I +  ++S   +     R
Sbjct: 147 STGKIQVFKLLS---VAGAYWR 165


>gi|312134685|ref|YP_004002023.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774736|gb|ADQ04223.1| threonyl-tRNA synthetase [Caldicellulosiruptor owensensis OL]
          Length = 639

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+++H+L  A+  + G  V          G  +D    + IT+  L+ IE  +  II 
Sbjct: 73  YWHTSSHILAQAVKRLFGDRVKLGIGPAIDRGFYYDFDIEESITNEILQKIEQEMQKIIK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    + R++AI        G  Y   +     E E    +       LC G H+ 
Sbjct: 133 EDLKIERFELTRDEAIK--LMQERGEPYKVELINDIPEGETISFYKQGEFIDLCTGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++    ++S   +     R
Sbjct: 191 STGKVKAFKLLS---VAGAYWR 209


>gi|326201675|ref|ZP_08191546.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988275|gb|EGD49100.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 645

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 29/232 (12%)

Query: 558 AIVERGILRTEMSLVLTI----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             V+    + E    L++    D   R  L+  H+A+H+L  A+  +  +     G  I 
Sbjct: 42  GRVKELDFKLENDCALSLLTFADEGGR--LAYRHTASHVLAQAVKRLFPNIKLAIGPAI- 98

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            +G  +D    K     +L  IE  +  II +++ +    + RE+AI        G  Y 
Sbjct: 99  ENGFYYDFDTEKNFAPEDLAKIEKEMEKIIKEDISLERFTLPREEAIKF--MEDKGEPYK 156

Query: 674 DRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             +     E E+   +       LC G H+ STG++  + ++S     AG          
Sbjct: 157 VELIKDLPEGEEISFYKQGDFVDLCAGPHLLSTGKLKAVKLMS----AAG---------- 202

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            A      +++ L+ +       +  +   V ++ EE +K       R+L+L
Sbjct: 203 -AYWRGNEKNKMLQRIYGTAFPKKSELEEYVTKL-EEAKKRDHNKLGRELEL 252


>gi|115648515|ref|XP_001203711.1| PREDICTED: similar to SJCHGC03396 protein, partial
           [Strongylocentrotus purpuratus]
 gi|115670729|ref|XP_795191.2| PREDICTED: similar to SJCHGC03396 protein, partial
           [Strongylocentrotus purpuratus]
          Length = 63

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 40/63 (63%), Gaps = 5/63 (7%)

Query: 46  FKNIFTGQEKPVYQ-----AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100
           FK IF G   P             QKC+RAGGKHNDLD+VG+   HHTFFEMLG +SFG 
Sbjct: 1   FKPIFQGTVDPNSDLGRLARAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGTWSFGD 60

Query: 101 YFK 103
           YFK
Sbjct: 61  YFK 63


>gi|167950027|ref|ZP_02537101.1| alanyl-tRNA synthetase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 67

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 181 ECIPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239
             + GG PG   E+G+RYIEIWNLVFMQ+ +  +     LPK S+DTGMGLER+A V+  
Sbjct: 3   PRVAGGPPGTPEEDGDRYIEIWNLVFMQYNRDAEGNMTPLPKPSVDTGMGLERLAAVMPG 62


>gi|241204765|ref|YP_002975861.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858655|gb|ACS56322.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 661

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R    I H A H++  A+  I        G  I  +G  +D   ++P T  +L  IE 
Sbjct: 66  DDRALELIRHDAAHVMAEAVQEIWPGTQVTIGPVI-ENGFYYDFAKNEPFTLDDLPKIEK 124

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----AL 693
            + +IIA+N     ++ +RE A    A    G +Y   +     E +D  ++       L
Sbjct: 125 KMKEIIARNAAFTKQVWSREKAKQVFADK--GEQYKVELVDAIPEGQDLKIYYQGDWFDL 182

Query: 694 CGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           C G H++STG+I     ++    +     R
Sbjct: 183 CRGPHMASTGQIGSAFKLLK---VAGAYWR 209


>gi|116872988|ref|YP_849769.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458497|sp|A0AJ08|SYT_LISW6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116741866|emb|CAK20990.1| threonyl-tRNA synthetase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 640

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +N+P+   +++RE+AI    A  +G +Y   +     + E   +++      LC G H
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPKDETVTIYTQGEFFDLCRGVH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG+I +  ++S   +     R
Sbjct: 185 VPSTGKIQVFKLLS---VAGAYWR 205


>gi|296332117|ref|ZP_06874581.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675488|ref|YP_003867160.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150888|gb|EFG91773.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413732|gb|ADM38851.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 643

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 13/195 (6%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      I  R  +  + ++ +  +        
Sbjct: 20  GTTTEDIAASISPGLK------KKSLAGKLNGKEIDLRTPINEDGTVEIITEGSEEGLQI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I    V      +  +G  +DV   + IT  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIY-KDVKFGVGPVIENGFYYDVEMEEAITPEDLPKIEKEMKKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            NLP+V + ++RE+A A    A +G      +     E E   ++       LC G HV 
Sbjct: 133 ANLPIVRKEVSREEAKARF--AEIGDDLKLELLDAIPEGETVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESS 715
           STG+I    ++S + 
Sbjct: 191 STGKIKEFKLLSLAG 205


>gi|300087925|ref|YP_003758447.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527658|gb|ADJ26126.1| threonyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 584

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 14/144 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I HSA H++  A+  I  S     G  I  +G  +D    +P+   +L  IE  +  I+
Sbjct: 12  AIRHSAAHIMAQAVLRIFPSARFGIGPAID-NGFYYDFELPRPLVPEDLAEIEAGMTAIV 70

Query: 644 AQNLPVVTRIMNREDAIASGAAA-----LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +N P     + R+ A    A+      L+    ND    +   Y +G      LC G H
Sbjct: 71  KENQPFSRETVTRQQAEELFASQPYKLELIRELPNDEEITI---YRNGDFFD--LCRGPH 125

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           VS T  +    ++S   I     R
Sbjct: 126 VSHTARVKSFKLLS---IAGAYWR 146


>gi|325857421|ref|ZP_08172476.1| alpha amylase, catalytic domain protein [Prevotella denticola CRIS
           18C-A]
 gi|325483131|gb|EGC86111.1| alpha amylase, catalytic domain protein [Prevotella denticola CRIS
           18C-A]
          Length = 721

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 13/162 (8%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   ++  N+ +    H+A HLL+  +  + G+  S N            +   KP   
Sbjct: 566 TVEYVLNSHNKEEFPPAHTAEHLLNQVMFRLFGAARSTNAHIERKKSKMTFILDHKPDRK 625

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA++LPV   +++R       +   L    ++ +R+V +     G  
Sbjct: 626 EE-KAIEDEMNRLIAEDLPVTFELVDRNHLPEGVSLDRLPEDASEMLRLVRI-----GDF 679

Query: 690 SSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIRRIEAIT 727
               C G HV ST +I    ++     E        RI    
Sbjct: 680 DVCPCIGRHVRSTAQIGRFELLGTNWDEQKHA---FRIRFKV 718


>gi|319786721|ref|YP_004146196.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465233|gb|ADV26965.1| threonyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 634

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 27/225 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPDDMAAIEQRMRELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSA----LCGGTHV 699
           Q+  VV ++  RE+ I    A   G  Y  R+      E    G++       +C G HV
Sbjct: 130 QDYDVVKKMTPREEVINVFKAR--GEDYKLRLIEDMGPEVTAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +     I     R +A            ++E+L+ +       +  +   
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDA------------KNEQLQRIYGTAWADEKQLKAY 232

Query: 760 VEEIWEEYRKLQLIHAKRK----LQLNVEDLSCHKIADVNFMSHI 800
           ++ I E  ++      K++    LQ     L        +    +
Sbjct: 233 IQRIEEAEKRDHRRIGKQQDLFHLQEEAPGLVFWHPKGWSVWQVV 277


>gi|255582427|ref|XP_002532001.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223528332|gb|EEF30374.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 658

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 5/156 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +VL  +  + + L I H+  H++  A+  +        G  I  +G  +D    +P+T
Sbjct: 90  EKIVLPTNESSEKLLRIRHTCAHVMAMAVQKVYPEAKVTIGPWI-ENGFYYDFDM-EPLT 147

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDG 686
             +LK I+  ++ II QNLP+V   ++RE+A     A     K    D ++   +     
Sbjct: 148 DKDLKRIKKEMDRIIGQNLPLVREEVSREEAQKRIMAVNEPYKMEILDSIKEDPITIYHI 207

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G     LC G HV STG I     V   S+     R
Sbjct: 208 GDEWWDLCAGPHVESTGNINR-KAVELESVAGAYWR 242


>gi|78044971|ref|YP_360408.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
 gi|123770579|sp|Q3ABS6|SYT_CARHZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77997086|gb|ABB15985.1| threonyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 634

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS+ HL+  A+  +        G  I  DG  +D    +  +  +L+ IE  +  I+ 
Sbjct: 71  FRHSSAHLMAQAVKRLFPKTKLAIGPAI-KDGFYYDFDPEESFSPEDLEKIEAEMEKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++LP+   +++R++AI        G  Y   +     E  +   +       LC G HV 
Sbjct: 130 EDLPIERFVLSRDEAIKFFEEK--GEIYKVELVKDIPEGVEISFYRQGEFVDLCTGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++   +I     R
Sbjct: 188 STGYLKAFKLL---NIAGAYWR 206


>gi|302802909|ref|XP_002983208.1| hypothetical protein SELMODRAFT_422552 [Selaginella moellendorffii]
 gi|300148893|gb|EFJ15550.1| hypothetical protein SELMODRAFT_422552 [Selaginella moellendorffii]
          Length = 262

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423
           +GL   + + S L  D+ L+G+ AF L+DT+G P+D+ Q +   + +  +DI  FN+ +E
Sbjct: 6   QGLEKFNRLTSDLKSDQ-LSGEDAFLLWDTYGFPIDLTQLMAEEKHIR-VDIEGFNRVME 63

Query: 424 EQRSRARAHSLGL 436
           E + +ARA     
Sbjct: 64  EAKEKARAARGKS 76



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 41/186 (22%)

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSV-- 681
           KPI    L+ IE  V   I   LPV T+  +   A    G  A+ G  Y D VRVV+V  
Sbjct: 99  KPIEPKHLQQIESIVEKQIKDALPVYTKEASLAQAKRIIGLRAVFGEVYPDPVRVVTVGK 158

Query: 682 ---------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                    E  +    S+  CGG                E  +              A 
Sbjct: 159 PVEDLLSDPENPEWAGLSTEFCGGP-------------TLEKEVA-------------AL 192

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
              +   E   +  + L++    +  R+ +   + + +   + K  ++  V+        
Sbjct: 193 KSSLDAAELPAARKTALRLQLNKLQERIRK---DQKAIADANLKLAIKAAVDTADALASK 249

Query: 793 DVNFMS 798
               ++
Sbjct: 250 GEKEVT 255


>gi|54295973|ref|YP_122285.1| hypothetical protein plpp0131 [Legionella pneumophila str. Paris]
 gi|53755805|emb|CAH17308.1| hypothetical protein plpp0131 [Legionella pneumophila str. Paris]
          Length = 224

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 31/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++ + VS  +  ++F +T  ++ +GGQ  DT    G      +     + E   +++ +
Sbjct: 13  QLMTKVVSVNENRLLFAETIGFSFSGGQESDTVRVNG------LMVTHSEIEDDLIYYTL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L     +++ ID+  R +L   H A  L+   +  +L   + + G+ I     R 
Sbjct: 67  PSEHGLSEGDVVLMEIDFVRRYKLMRLHFAAELILELVQRMLP--IEKIGAHIAEHKARI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D ++   I+     S+    N IIA+++ + T   +                   + R  
Sbjct: 125 DFSYQHNISDI-FDSLLFEYNQIIAKDMLIRTGFSDE----------------KSQRRYW 167

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +E       S+  CGGTHV ST E+     +   +I +G  RIE
Sbjct: 168 EIEG-----FSNVSCGGTHVQSTVEVG-FITLKRVNIGSGKERIE 206


>gi|327314142|ref|YP_004329579.1| alpha amylase catalytic domain-containing protein [Prevotella
           denticola F0289]
 gi|326944596|gb|AEA20481.1| alpha amylase, catalytic domain protein [Prevotella denticola
           F0289]
          Length = 721

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 13/162 (8%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   ++  N+ +    H+A HLL+  +  + G+  S N + I     +           
Sbjct: 566 TVEYVLNSHNKEEFPPAHTAEHLLNQVMFRLFGAARSTN-AHIERKKSKMTFILDHKPDR 624

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA++LPV   +++R       +   L    ++ +R+V +     G  
Sbjct: 625 KEKKAIEDEMNRLIAEDLPVTFELVDRNHLPEGVSLDRLPEDASEMLRLVRI-----GDF 679

Query: 690 SSALCGGTHVSSTGEIMLLYIVS----ESSIRAGIRRIEAIT 727
               C G HV ST +I    ++     E        RI    
Sbjct: 680 DVCPCIGRHVRSTAQIGRFELLGTNWDEQKHA---FRIRFKV 718


>gi|325917697|ref|ZP_08179888.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536091|gb|EGD07896.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 634

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y      D    ++            +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSEDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|259908578|ref|YP_002648934.1| threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|224964200|emb|CAX55707.1| Threonyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96]
 gi|283478547|emb|CAY74463.1| thrS [Erwinia pyrifoliae DSM 12163]
          Length = 642

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 78/191 (40%), Gaps = 12/191 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + ++ S+ +           I HS  HLL HA+  +        G  I  +G  +DV  
Sbjct: 50  PIASDASVAIITAKDEAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDI 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            + +T  +++ +E  ++ +   N  V+ + ++ ++A  + AA   G  Y   +   ++ +
Sbjct: 109 DRTLTQEDIEQLEKRMHQLAETNYDVIKKNVSWQEARDAFAAR--GENYKMTILDENISH 166

Query: 684 ED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +D  G++       +C G HV +        +     I     R ++      R +    
Sbjct: 167 DDRPGLYHHQEYVDMCRGPHVPNMRFCHHFKL---QKISGAYWRGDSSNKMLQRIYGTAW 223

Query: 739 DEKLKSLASFL 749
            +K K LA++L
Sbjct: 224 ADK-KQLAAYL 233


>gi|298491630|ref|YP_003721807.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
 gi|298233548|gb|ADI64684.1| threonyl-tRNA synthetase ['Nostoc azollae' 0708]
          Length = 606

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 20/196 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D  + +P +  +LK+I+  +  II 
Sbjct: 27  IRHTASHIMAMAVQKLFPKVQVTIGPWI-ENGFYYDFDNPEPFSDKDLKAIQKEMVKIIN 85

Query: 645 QNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           + LP+V   ++RE+A     G       +    ++   +     G     LC G HV +T
Sbjct: 86  RKLPLVREEVSREEAQKLIEGIKEPYKLEILADIKQEPITIYHLGEEWWDLCAGPHVENT 145

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---- 758
            +I     +   S+     R     G   ++ L                +   +      
Sbjct: 146 KDINP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------TPEQLAEYKRR 192

Query: 759 RVEEIWEEYRKLQLIH 774
           + E +  ++RKL    
Sbjct: 193 KAEALRRDHRKLGKEL 208


>gi|239621470|ref|ZP_04664501.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239515931|gb|EEQ55798.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 686

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 87/265 (32%), Gaps = 44/265 (16%)

Query: 522 AEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERG--------ILRTEM 569
            ++ GQ+           G+   ++ T    +      +   V+           L    
Sbjct: 3   PDSKGQIMAQATISITVNGEAKEVEATTTGVELFAEDKNIIAVKINGENRDLYTPLNDGD 62

Query: 570 SLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
           ++  + +D ++   +   HSATH++  A+  +  +     G  I  DG  +D    +P T
Sbjct: 63  TVDPIALDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQVDQPFT 120

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDRVRVVSV 681
             +LK IE  +  II  +     R +  E+A+   A              + D      +
Sbjct: 121 PNDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDPAAATEI 180

Query: 682 EYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------R 722
             ++   +             LC G H+ +T  I    I  E S  A  R         R
Sbjct: 181 SEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEKNPTMQR 238

Query: 723 IEAITGQRARSHLMGQDEKLKSLAS 747
           +   T    +  L     +L+  A 
Sbjct: 239 VYG-TAWATKEDLKAYQTRLEEAAK 262


>gi|4928218|gb|AAD33469.1|AF130451_1 alanyl-tRNA synthetase [Terrimonas ferruginea]
          Length = 56

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 35/55 (63%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEM 92
          FTN+GM  FK+ F G  KP    V   QKC+R  GKHNDL+ VG    HHTFFEM
Sbjct: 1  FTNAGMNQFKDYFLGNRKPASARVADTQKCLRVSGKHNDLEEVGVDTYHHTFFEM 55


>gi|256763421|ref|ZP_05504001.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256958077|ref|ZP_05562248.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|257079964|ref|ZP_05574325.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
 gi|256684672|gb|EEU24367.1| threonyl-tRNA synthetase [Enterococcus faecalis T3]
 gi|256948573|gb|EEU65205.1| threonyl-tRNA synthetase [Enterococcus faecalis DS5]
 gi|256987994|gb|EEU75296.1| threonyl-tRNA synthetase [Enterococcus faecalis JH1]
          Length = 645

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 6/204 (2%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D+G    D  + +  +  +K   G F    I     +  + SL +      
Sbjct: 7   FPDGAVKPFDSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIAEDGSLEIVTPDHE 66

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                + HS+ HL+ +AL  +  +     G  I             P+T+ +L +IE  +
Sbjct: 67  DALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLPAIEAEM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTH 698
             I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G H
Sbjct: 127 MKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVD-LCRGVH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG I +  ++S   +     R
Sbjct: 186 VPSTGRIQVFKLLS---VAGAYWR 206


>gi|304439592|ref|ZP_07399496.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371904|gb|EFM25506.1| threonine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 647

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 11/163 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +        +    H++ H+L HA+  +        G  I  +G  +D+  
Sbjct: 61  PINCDAEVKILTFEDKEGKKIFWHTSAHVLAHAIMNLWPETKFAIGPAID-NGFYYDIDL 119

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              I   +L  IE+ +  I+     V   IM R+ AI        G  Y   + +  +E 
Sbjct: 120 EHKIGPEDLPKIEEEMQKIVKDAHEVTFEIMPRDKAIEFFKER--GQDYKVEL-IEGIED 176

Query: 684 EDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E+ G++       LC G H+ +   I    ++S   I     R
Sbjct: 177 ENVGIYKMGNFVDLCRGPHIGNVKIIKAFKLLS---IAGAYWR 216


>gi|325919878|ref|ZP_08181868.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
 gi|325549662|gb|EGD20526.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           gardneri ATCC 19865]
          Length = 634

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPDDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y  R+   +S +    G++       +C G HV
Sbjct: 130 QDYEVIKKVTPRAEVIELFAQR--GEEYKLRLIEDMSADITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|294626197|ref|ZP_06704803.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599549|gb|EFF43680.1| threonyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 634

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 11/162 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y      D    ++            +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSEDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
            +T  +    +     I     R +A   Q  R +     +K
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADK 226


>gi|225028654|ref|ZP_03717846.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
 gi|224954040|gb|EEG35249.1| hypothetical protein EUBHAL_02933 [Eubacterium hallii DSM 3353]
          Length = 591

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            +   + +  H++ H+L  A+  +        G  I  +G  +D   S P T   L +IE
Sbjct: 16  EEKEVKEAFWHTSAHVLAQAVKRLYPDTKCAIGPAID-NGFYYDFDFSFPFTEENLAAIE 74

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             +  I+ Q+LP+    + +E A+           Y   +     E E    +       
Sbjct: 75  KEMKKIVKQSLPLEVFEVTKEKALDY--MKERQEDYKVEMIEELPEGETITFYKQGDYEE 132

Query: 693 LCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRA---RSHLMGQDEKL 742
            C G HVS+T  I  + ++S +            + RI  I+  +A   + +L   +E  
Sbjct: 133 FCAGPHVSNTCVIKAIKLLSTAGAYWRGDEKNKMLTRIYGISFPKAAELKDYLNMLEEAK 192

Query: 743 KS 744
           K 
Sbjct: 193 KR 194


>gi|291516871|emb|CBK70487.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Bifidobacterium
           longum subsp. longum F8]
          Length = 677

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + +D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLNDGDTVDPIALDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDQPFTPNDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                R+   T    +  L     +L+  A 
Sbjct: 224 NPTMQRVYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|257463827|ref|ZP_05628214.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|317061364|ref|ZP_07925849.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
 gi|313687040|gb|EFS23875.1| threonyl-tRNA synthetase [Fusobacterium sp. D12]
          Length = 637

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 34/233 (14%)

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I  H A VE  +  +E  + +           I HSA HL+  A+  +        G  I
Sbjct: 49  ILDHDAKVEFIMPESEEGVEV-----------IRHSAAHLMAQAVIRLFPGTKVTIGPSI 97

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +G  +D    +  T  +L  IE+ +  +  +++ V   +M+RE+AI       LG  Y
Sbjct: 98  -ENGFYYDFDPKEQFTEEDLLKIEEEMKRLSKEDIKVERFMMSREEAIEYFEK--LGEHY 154

Query: 673 NDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
              +     + E    +       LC G HV S      +  +   S+     R      
Sbjct: 155 KVEIIKDIAKGEQLSFYRQGEFVDLCRGPHVPS---TGHIKAIKLKSVAGAYWR------ 205

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                    +++ L+ +  +   ++ ++   + ++ EE  K       ++L+L
Sbjct: 206 ------GDSKNKMLQRIYGYAFATEKDLKDFL-KLMEEAEKRDHRKLGKELEL 251


>gi|120601271|ref|YP_965671.1| threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
 gi|120561500|gb|ABM27244.1| Threonyl/alanyl tRNA synthetase, SAD [Desulfovibrio vulgaris DP4]
          Length = 218

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 28/229 (12%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           + + E V   V      +  D+T  +A +GGQ  D G   G  I   +       + + +
Sbjct: 13  LTETEAVVTGVEND--VITLDRTVAFAFSGGQESDRGTIAGHAILKAVKG--SPCDPLEL 68

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           ++ +     L     + + ID + RR+L   H A  L+   ++     H  + G+ I+PD
Sbjct: 69  YYTLPAGHGLTPGSRVSVCIDGEARRRLVRLHFAAELVLELVNR-HYDHPEKTGAHISPD 127

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             R D      I++A    + + ++ ++A +LP+ +                     +  
Sbjct: 128 KARLDFAWQGNISTA-FPMLHERLSALVAADLPIESSF----------------EDESTE 170

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           VR  S+E       +   CGGTH +STG +  +  +   +  +G  RIE
Sbjct: 171 VRYWSIEG-----FARVRCGGTHPASTGAVGRIR-LRRENPGSGRERIE 213


>gi|302871393|ref|YP_003840029.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574252|gb|ADL42043.1| threonyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47]
          Length = 639

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+ +H+L  A+  + G  V          G  +D    + IT   L+ IE  +  II 
Sbjct: 73  YWHTTSHILAQAVKRLFGDKVKLGIGPAIDKGFYYDFDVEESITIEILEKIEQEMQKIIK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    ++RE+AI        G  Y   +     E E    +       LC G H+ 
Sbjct: 133 EDLKIERFELSREEAIK--LMQQRGENYKVELINDIPEGEIISFYRQGEFVDLCTGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++S   +     R
Sbjct: 191 STGRVKAFKLLS---VAGAYWR 209


>gi|238763048|ref|ZP_04624015.1| Alanyl-tRNA synthetase-related protein [Yersinia kristensenii ATCC
           33638]
 gi|238698806|gb|EEP91556.1| Alanyl-tRNA synthetase-related protein [Yersinia kristensenii ATCC
           33638]
          Length = 210

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 37/226 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +    +++     G++  V+   T F+ + GGQ  DTG   GD   L++   Q    G  
Sbjct: 14  LAMDVDVLSCTPDGEEFAVILQATIFHPQGGGQPSDTGHI-GDNNVLRVVLQQ----GQL 68

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           +H+       +    +    +D + R   +  HSA HL+ +   +     V    +   P
Sbjct: 69  IHY---MARPIAPG-TYRAAVDSERRLLNTRLHSAGHLIGNIGESYGWLPV---KAHHWP 121

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              +     S+     ++++++  +  +I Q+LP    +                     
Sbjct: 122 GEGKVSFKRSQNPQVIDIEAVQSTLEQLIQQDLPRHISV--------------------- 160

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
           R     V + +   +    CGGTHV S G +  + + S S  + GI
Sbjct: 161 RADFREVGFGELPAY---ACGGTHVRSLGALGKVTVQSISE-KKGI 202


>gi|206603264|gb|EDZ39744.1| Threonyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG']
          Length = 617

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 16/174 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA H L  A+  +  S     G   T +G  +D  + +P T  +L+ IE+ +  +I
Sbjct: 42  ALRHSAAHTLAQAVKKLYPSAQVGIGPA-TEEGFYYDFRYERPFTPEDLERIENEMKSLI 100

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             +LP+V + ++R +A            +   +     E  +  V+       LC G HV
Sbjct: 101 RSSLPIVRKPVSRGEAEKLFRER--NEPFKLELIQGIPEDAEITVYEQGEFVDLCRGPHV 158

Query: 700 SSTGEIMLLYIVSESS-IRAGIR------RIEAIT--GQRARSHLMGQDEKLKS 744
           SSTGEI  + ++S SS    G+       RI       ++  +  + Q E+++ 
Sbjct: 159 SSTGEIPAVRLLSTSSAYWKGVESNPSLQRIYGTAFHSEKELADYLRQQEEVQR 212


>gi|303248736|ref|ZP_07334989.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
 gi|302489901|gb|EFL49829.1| threonyl-tRNA synthetase [Desulfovibrio fructosovorans JJ]
          Length = 647

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +  +     G  I  +G  +D    +P T  +L++IE  +   IA
Sbjct: 71  IRHSTAHIMAEAVKKLFPAAQVTIGPSI-ENGFYYDFAFERPFTPEDLEAIEAEMQKSIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
            N P     + + DA A  A+   G  Y   +   ++  +   ++     + LC G HV 
Sbjct: 130 ANAPFSCTFVPKADAKALFASQ--GEVYKLEIMDENIVGDTVSLYRHGTFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG +    ++S   +     R
Sbjct: 188 TTGAVKAFKLLS---VAGAYWR 206


>gi|322691278|ref|YP_004220848.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320456134|dbj|BAJ66756.1| threonyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 677

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + +D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLNDGDTVDPIALDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDQPFTPNDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                R+   T    +  L     +L+  A 
Sbjct: 224 NPTMQRVYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|23465302|ref|NP_695905.1| threonyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227547263|ref|ZP_03977312.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|317483234|ref|ZP_07942229.1| threonyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|73919773|sp|Q8G6C2|SYT_BIFLO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23325940|gb|AAN24541.1| threonyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|227212222|gb|EEI80118.1| threonyl-tRNA synthetase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|316915303|gb|EFV36730.1| threonyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 677

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 73/211 (34%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + +D ++   +   HSATH++  A+  +  +     G  I  DG  +D  
Sbjct: 48  PLNDGDTVDPIALDSEDGLAIMR-HSATHVMAQAVQEVYPNAKLGVGPVI-KDGFYYDFQ 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK IE  +  II  +     R +  E+A+   A              + D 
Sbjct: 106 VDQPFTPNDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                +  ++   +             LC G H+ +T  I    I  E S  A  R    
Sbjct: 166 AAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI--ERSAAAYWRGSEK 223

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                R+   T    +  L     +L+  A 
Sbjct: 224 NPTMQRVYG-TAWATKEDLKAYQTRLEEAAK 253


>gi|262275836|ref|ZP_06053645.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
 gi|262219644|gb|EEY70960.1| threonyl-tRNA synthetase [Grimontia hollisae CIP 101886]
          Length = 642

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
              PV+ + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV
Sbjct: 130 TKYPVIKKNVSWQEARDTFESR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
              G      I+   ++     R                ++ L+ +       +  +   
Sbjct: 188 PHMGFCQNFKIL---NVAGAYWR------------GNSDNKMLQRIYGTAFSDKKELKAH 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           ++ + E  ++      K+
Sbjct: 233 LQRLEEAAKRDHRKLGKQ 250


>gi|257465911|ref|ZP_05630222.1| threonyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917067|ref|ZP_07913307.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690942|gb|EFS27777.1| threonine-tRNA ligase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 637

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 77/201 (38%), Gaps = 23/201 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D    +  T  +L  IE+ +  +  
Sbjct: 70  IRHSAAHLMAQAVIRLFPGTKVTIGPAI-ENGFYYDFDPKEQFTEEDLTRIEEEMKKLSK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +++ V   +M+RE+AI       LG  Y   +     + E    +       LC G HV 
Sbjct: 129 EDIKVERFMMSREEAIEYFEK--LGEHYKVEIIKEIAKGEQLSFYRQGDFVDLCRGPHVP 186

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S      +  V   S+     R               +++ L+ +  +   ++ ++   +
Sbjct: 187 S---TGHIKAVKLKSVAGAYWR------------GDSKNKMLQRIYGYAFATEKDLKDFL 231

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
            ++ EE  K       ++L+L
Sbjct: 232 -KLMEEAEKRDHRKLGKELEL 251


>gi|289578715|ref|YP_003477342.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528428|gb|ADD02780.1| threonyl-tRNA synthetase [Thermoanaerobacter italicus Ab9]
          Length = 635

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ +++AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTDRPFTTEDFEAIEQEMNKIIKEDYKLERFVLPKDEAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
                 Y   +     E E+   +       LC G H+ STG +  + ++S + 
Sbjct: 148 EEKDEPYKVELIKEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLSVAG 201


>gi|302874879|ref|YP_003843512.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|307690504|ref|ZP_07632950.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
 gi|302577736|gb|ADL51748.1| threonyl-tRNA synthetase [Clostridium cellulovorans 743B]
          Length = 635

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTI----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             V+  +        L I    D + R   ++ H+A+H+L  A+  +  +     G  I 
Sbjct: 42  GEVKDLMTEINKDCSLEILTFDDEEGRS--TLRHTASHILAQAVKRLYPNVKLAIGPSI- 98

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--LLGTK 671
            +G  +D     PIT   L+ IE  +N II +NL +    + RE+AI        L   K
Sbjct: 99  ENGFYYDFDADFPITPELLEKIEKEMNKIIKENLKLEKFELPREEAIKYMEEKQELYKVK 158

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             + + + +V         + LC G HV       ++  V  +S+     R
Sbjct: 159 LIEDLPLDAVISFYTQGEFTDLCAGPHV---IGTGMVKAVKLTSVAGAYWR 206


>gi|56964462|ref|YP_176193.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56910705|dbj|BAD65232.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 643

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 92/237 (38%), Gaps = 23/237 (9%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G         +  L  + ++ + +   +     + HS  H+L  A+  +    V 
Sbjct: 36  KKALAGKLNGTLYDLKTPLPEDGNIEIVVAGSDEGLDIMRHSTAHVLAQAVKRLFPG-VK 94

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                +  DG  +D+   + IT+ +L  IE  +  II +NL ++   ++RE+AIA     
Sbjct: 95  LGVGPVIEDGFYYDIDADESITAEDLPRIEKEMKKIIGENLEILREEVSREEAIARF--K 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            +   Y   +     E E   ++       LC G HV ST +I    ++S         R
Sbjct: 153 EINDPYKLELIEAIPEEETVTIYKQGEFFDLCRGVHVPSTNKIKEFKLLST---AGAYWR 209

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            +A            +++ L+ +      ++ ++   +  + EE ++       ++L
Sbjct: 210 GDA------------KNKMLQRIYGTAFFNKDDLNEHL-RLLEEAKERDHRKLGKEL 253


>gi|255019069|ref|ZP_05291195.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL F2-515]
          Length = 188

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I+ 
Sbjct: 36  LRHSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKIVR 94

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G HV 
Sbjct: 95  ENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVHVP 152

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I +  ++S   +     R
Sbjct: 153 STGKIQVFKLLS---VAGAYWR 171


>gi|34763461|ref|ZP_00144407.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|237741623|ref|ZP_04572104.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294785766|ref|ZP_06751054.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
 gi|27886876|gb|EAA24002.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|229429271|gb|EEO39483.1| threonyl-tRNA synthetase [Fusobacterium sp. 4_1_13]
 gi|294487480|gb|EFG34842.1| threonine--tRNA ligase [Fusobacterium sp. 3_1_27]
          Length = 637

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID      +   HS  HL+  A+  +        G  I  +G  +D    +  T  +L+ 
Sbjct: 60  IDSPEGEDIVR-HSTAHLMAQAVLRLYPDTKVTIGPVI-ENGFYYDFDPVEQFTEEDLEK 117

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--- 691
           IE  +  I+ +N+ +   ++ R++A+      +   KY   +     + E    +     
Sbjct: 118 IEAEMKKIVKENIKLEKYVLPRDEAVQYF-RDVDKNKYKVEIVEAIPQGEQVSFYKQGDF 176

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV STG +    +    ++     R               +++ L+ +  +  
Sbjct: 177 TDLCRGTHVPSTGYLKAFKL---RTVAGAYWR------------GNSKNKMLQRIYGY-S 220

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            S  + + +  ++ EE  K       ++L+L
Sbjct: 221 FSNEDRLKKHLKLMEEAEKRDHRKLGKELEL 251


>gi|260893515|ref|YP_003239612.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
 gi|260865656|gb|ACX52762.1| threonyl-tRNA synthetase [Ammonifex degensii KC4]
          Length = 637

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H+L  A+  +        G   T +G  +D     P +  +L+ IE  +  II 
Sbjct: 71  YWHSTAHILAQAVKRLYPEAKLAIGPP-TANGFYYDFDVPTPFSPEDLERIEAEMKRIIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            NLP+V   + RE+A    A+   G  Y   +           ++       LC G H+ 
Sbjct: 130 ANLPIVREEIAREEARRFFASR--GEAYKVELIDELPPEVPITLYRQGEFVDLCRGPHLP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++   ++     R
Sbjct: 188 STGYVKAFKLL---NVAGAYWR 206


>gi|58582810|ref|YP_201826.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427404|gb|AAW76441.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 671

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 108 IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQALIA 166

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y  R+   +S +    G++       +C G HV
Sbjct: 167 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIDDMSDDITAMGLYYHQEYVDMCRGPHV 224

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 225 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 277


>gi|257092825|ref|YP_003166466.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257045349|gb|ACV34537.1| threonyl-tRNA synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 638

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQ--LSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +     R +  + L I  +   +    I HS  HL+ +A+  +  +     G  I  +
Sbjct: 42  GRLVDTSFRIDTDVHLGIITEKDPEGLEVIRHSTAHLMAYAVKELFPAAQVTIGPVI-EN 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D    +P T  +L +IE  + ++  ++L V   +  R++AIA   +  +G  Y   
Sbjct: 101 GFYYDFACERPFTLEDLAAIEKRMTELARRDLLVQREVWQRDEAIAFFKS--IGEHYKAE 158

Query: 676 VRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +       ++  ++       LC G HV STG++ +  ++    +     R
Sbjct: 159 LIDAIPPGQEVSLYREGDFVDLCRGPHVPSTGKLKVFKLMK---LAGAYWR 206


>gi|313673284|ref|YP_004051395.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940040|gb|ADR19232.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 640

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 27/218 (12%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           ++    + +  +        + HS  HL+  A+  +        G  I  DG  +D    
Sbjct: 50  VKDGDQVTIITEKDPEAIDILRHSTAHLMAQAVQRLFKDVKVTIGPTIQ-DGFYYDFDID 108

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVV 679
            P    +L+ IE  + DI  Q+LP++ + + +EDAI     + +G  Y     ND    V
Sbjct: 109 TPFKEEDLEKIEQVMADIARQDLPIIRKELTKEDAIKLF--SEMGETYKVEIINDLGEDV 166

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
              Y  G      LC G H+ STG I    ++S   +     R                 
Sbjct: 167 VSVYSQGDF--VDLCRGPHLPSTGFIKHFKLLS---VAGAYWR---------GDEKNKML 212

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEY-----RKLQL 772
           +++   A F K      + R+EE  +       ++L+L
Sbjct: 213 QRIYGTAWFKKSELDEYLNRLEEAKKRDHRRLGKELEL 250


>gi|295105820|emb|CBL03363.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 637

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 82/247 (33%), Gaps = 18/247 (7%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +G +L D          + +   +    GI     +     +    S+ +     +    
Sbjct: 9   SGKELADGATVADVAASIGVGLAKAALAGIVNDQPVDLSAPVAEGDSVAIVTAKSDEGLE 68

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H++  AL  + G      G  I   G  +DV   + ++  +  +IE  + +I+
Sbjct: 69  LLRHSTAHVMAAALVDLYGDVQFGVGPAI-EGGFYYDVKTGRALSPDDFAAIEARMAEIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + P   R++ R +A    A          +      +     G  +  LC G H+ ST
Sbjct: 128 KADEPFERRVVTRAEAEDIFADQPFKLELIAELPEDAVITTYTIGKFTD-LCRGPHLPST 186

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G++    +     +     R +A            + E L  +       Q  +   V  
Sbjct: 187 GKLGAFKLTK---LAGAYWRGDA------------EREMLTRIYGTAFFKQKELDEHVRN 231

Query: 763 IWEEYRK 769
           + E  ++
Sbjct: 232 LEEAEKR 238


>gi|257452295|ref|ZP_05617594.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|317058838|ref|ZP_07923323.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
 gi|313684514|gb|EFS21349.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_5R]
          Length = 637

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 12/166 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D    +  T  +L  IE+ +  +  
Sbjct: 70  IRHSAAHLMAQAVIRLFPGTKVTIGPAI-ENGFYYDFDPKEQFTEEDLIRIEEEMKKLSK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +++ V   +M+RE+AI       LG  Y   +     + E    +       LC G HV 
Sbjct: 129 EDIKVERFMMSREEAIEYFEK--LGENYKVEIIKEIAKGEQLSFYRQGDFVDLCRGPHVP 186

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKS 744
           S      +  V   S+     R ++     QR   +    ++ LK 
Sbjct: 187 S---TGHIKAVKLKSVAGAYWRGDSKNKMLQRIYGYAFATEKDLKD 229


>gi|154482657|ref|ZP_02025105.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
 gi|149736433|gb|EDM52319.1| hypothetical protein EUBVEN_00330 [Eubacterium ventriosum ATCC
           27560]
          Length = 667

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  I   G  +D  H +P +  +L  IE  +  II
Sbjct: 83  AYRHTASHVMAEAVKNLFPEAKLAIGPSIDT-GFYYDFEH-EPFSREDLDKIEAEMKKII 140

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    + REDAI           Y   +     E      +S      LC G H+
Sbjct: 141 KKGARLERFTLPREDAIKYMEDR--NEPYKVELIKDLPEGSTISFYSQGEFVDLCAGPHL 198

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +T  I    I+S S       S +A ++RI A T   ++  L    E+L+   +
Sbjct: 199 MNTKSIKAFKIISSSMAYWRGDSSKARLQRIYA-TAFDSKDELNKYLEELEDAKN 252


>gi|108804139|ref|YP_644076.1| Ser-tRNA(Thr) hydrolase/threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
 gi|123368184|sp|Q1AWG4|SYT_RUBXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108765382|gb|ABG04264.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 639

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H +  A+  +        G  +  DG  +D+  +  I+  +L  IE+ + +I  
Sbjct: 71  LRHSTAHAMAQAILELYPGSKLTIGPPVD-DGFYYDIEVNGRISEEDLPRIEEKMREIAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           ++LPV    +++E+A           +  D +    V     G     LC G HV STG 
Sbjct: 130 RDLPVRREEVSKEEARRLYRDNPYKLELIDEIPDERVSIYRQGDFFD-LCRGPHVPSTGR 188

Query: 705 IMLLYIVSESSIRAGIRR 722
           +    +    S+     R
Sbjct: 189 LGAFKL---QSVAGAYWR 203


>gi|224499783|ref|ZP_03668132.1| threonyl-tRNA synthetase [Listeria monocytogenes Finland 1988]
          Length = 640

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 16/202 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   + 
Sbjct: 16  GVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALGIL 70

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I+ 
Sbjct: 71  R-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKIVR 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+P+   +++RE+AI    A  +G +Y   +     E E   +++      LC G HV 
Sbjct: 129 ENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVHVP 186

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I +  ++S   +     R
Sbjct: 187 STGKIQVFKLLS---VAGAYWR 205


>gi|116070824|ref|ZP_01468093.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
 gi|116066229|gb|EAU71986.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. BL107]
          Length = 615

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 84/242 (34%), Gaps = 23/242 (9%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L I HS +H++  A+  +        G   T  G  +D  + +P T  +LK+I+  + 
Sbjct: 33  QLLKIRHSMSHVMAMAVQKLFPDAQVTIGPW-TETGFYYDFDNPEPFTEDDLKAIKKEMG 91

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSALCGGTHV 699
            II + LP+    ++R++A     A     K     R+   +     G     LC G HV
Sbjct: 92  KIIGRKLPLERIEVSRDEAEKRIKAQNEPYKLEILERLQEPITLYTLGDQWWDLCAGPHV 151

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T E+         S+     R     G   ++ L             L          
Sbjct: 152 ENTKELHP-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWETPEQL---------- 195

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                 E+++ +    +R  +   +DL    I D      +        ++ +++   ++
Sbjct: 196 -----AEHKRRKAEALRRDHRRLGKDLDLFSIEDEAGAGLVFWHPRGARMRLLIEDFWRQ 250

Query: 820 IQ 821
             
Sbjct: 251 AH 252


>gi|261855919|ref|YP_003263202.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
 gi|261836388|gb|ACX96155.1| threonyl-tRNA synthetase [Halothiobacillus neapolitanus c2]
          Length = 637

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 20/167 (11%)

Query: 574 TIDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +D+  R  +           I HS  HL+  A+  +  S     G  I  +G  +D   
Sbjct: 50  VVDHDARIAIVTAKDPEGLEVIRHSTAHLMAQAVKQLYPSAQVTIGPVID-NGFYYDFYF 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P    +L +IE  ++++ A+   +  R+++R +A+       LG ++   +     E 
Sbjct: 109 ERPFNDEDLAAIEARMHELAAKGDDLTRRVVDRSEAVQFFDQ--LGEEFKVEIIQSIPEA 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           E+  +++       C G HV +T  + +  ++    +     R +A 
Sbjct: 167 EELTLYTQGDFTDFCRGPHVPNTNRLKVFKLMK---VAGAYWRGDAK 210


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040681|gb|ACT57477.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I HS  H++  A+ +I        G  I  DG  +D    +P +S EL  IE
Sbjct: 65  EDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPII-EDGFYYDFDKEQPFSSDELAQIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +IIA++ P + + ++ E A     +      Y   +       E+  ++       
Sbjct: 124 KKMQEIIARDSPFLKQYLSHEKARELFESK--KEAYKVEILESIPAKENVTLYRQGEWFD 181

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           LC G HV STG++          +     R
Sbjct: 182 LCRGPHVRSTGQVKKF--FKLMKVAGAYWR 209


>gi|21231898|ref|NP_637815.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767974|ref|YP_242736.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991100|ref|YP_001903110.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|25453287|sp|Q8P7Z2|SYT_XANCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81306049|sp|Q4UW57|SYT_XANC8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229558465|sp|B0RRG9|SYT_XANCB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21113622|gb|AAM41739.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573306|gb|AAY48716.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732860|emb|CAP51054.1| unnamed protein product [Xanthomonas campestris pv. campestris]
          Length = 636

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 73  IRHSCAHLVGHAVKQLYPDVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQQLIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y  R+   +S +    G++       +C G HV
Sbjct: 132 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSDDITAMGLYYHQEYVDMCRGPHV 189

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 190 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 242


>gi|300856610|ref|YP_003781594.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300436725|gb|ADK16492.1| threonyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 16/173 (9%)

Query: 558 AIVERGILRTEMSLVLTI----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
             VE           L I    D   ++ L   H+ +H+L  A+  +        G  I 
Sbjct: 42  GKVEELNKEINEDCKLEILTFEDEDGKKILR--HTGSHILAQAVKRLYPEVKLAIGPSID 99

Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
            DG  +D+      T   L+ IE  +N II +N  +    + R++A+           Y 
Sbjct: 100 -DGFYYDMDADFSFTPELLEKIEGEMNKIIKENEKLERFELTRDEAVK--LMEEKNEPYK 156

Query: 674 DRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            ++     E E    +       LC G HV S      + +V   SI     R
Sbjct: 157 VQLIKDLPEDEIISFYKQGDFVDLCAGPHVPS---TGKVKVVKLLSIAGAYWR 206


>gi|78048351|ref|YP_364526.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325927169|ref|ZP_08188432.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
 gi|123743902|sp|Q3BRT7|SYT_XANC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78036781|emb|CAJ24474.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325542482|gb|EGD13961.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Xanthomonas
           perforans 91-118]
          Length = 634

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPDDMAAIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y      D    ++            +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSEDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|331089982|ref|ZP_08338872.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330402896|gb|EGG82462.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 641

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  I  DG  +D+    P+T+ +L  IE  +  I+
Sbjct: 69  AFRHTASHIMAQAIKRLYPDAKLAIGPSI-ADGFYYDIDKETPLTAEDLDKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NL +    M RE+AIA          Y   +     E E    +S      LC G H+
Sbjct: 128 KENLEIKQYTMPREEAIAYF--KEKNEPYKVELIEDLPEGETISFYSQGEFTDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +    + S + 
Sbjct: 186 MTTKPVKAFKLTSLAG 201


>gi|153814564|ref|ZP_01967232.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|317501270|ref|ZP_07959474.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145848058|gb|EDK24976.1| hypothetical protein RUMTOR_00778 [Ruminococcus torques ATCC 27756]
 gi|316897337|gb|EFV19404.1| threonine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 641

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  I  DG  +D+    P+T+ +L  IE  +  I+
Sbjct: 69  AFRHTASHIMAQAIKRLYPDAKLAIGPSI-ADGFYYDIDKETPLTAEDLDKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NL +    M RE+AIA          Y   +     E E    +S      LC G H+
Sbjct: 128 KENLEIKQYTMPREEAIAYF--KEKNEPYKVELIEDLPEGETISFYSQGEFTDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +    + S + 
Sbjct: 186 MTTKPVKAFKLTSLAG 201


>gi|254497797|ref|ZP_05110565.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352974|gb|EET11741.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 211

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 31/225 (13%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +++ + +S  +  ++F +T  ++ +GGQ  DT    G      +     + E   +++ +
Sbjct: 13  QLMTKVISVNENRLLFAETIGFSFSGGQESDTVRVNG------LMVTHSEIEDDLIYYTL 66

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
                L     +++ ID+  R +L   H A  L+   +  +L   + + G+ I     R 
Sbjct: 67  PSGHGLSEGDVVLMEIDFVRRYKLMRLHFAAELILELVQRMLP--IEKIGAHIAEHKARI 124

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D ++   I+     S+    N IIA+++ + T   +                   + R  
Sbjct: 125 DFSYQHNISDI-FDSLLFEYNQIIAKDMLIRTGFSDE----------------KSQRRYW 167

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
            +E       S   CGGTHV ST E+  +  +  +++  G  RIE
Sbjct: 168 EIEG-----FSKVSCGGTHVKSTAEVGYIT-LKRANVGKGKERIE 206


>gi|29377326|ref|NP_816480.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255971805|ref|ZP_05422391.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256854147|ref|ZP_05559512.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|73919789|sp|Q830D0|SYT_ENTFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29344793|gb|AAO82550.1| threonyl-tRNA synthetase [Enterococcus faecalis V583]
 gi|255962823|gb|EET95299.1| threonyl-tRNA synthetase [Enterococcus faecalis T1]
 gi|256711090|gb|EEU26133.1| threonyl-tRNA synthetase [Enterococcus faecalis T8]
 gi|323481721|gb|ADX81160.1| threonyl-tRNA synthetase [Enterococcus faecalis 62]
          Length = 645

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 6/204 (2%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D+G    D  + +  +  +K   G F    I     +  + SL +      
Sbjct: 7   FPDGAVKPFDSGITTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLEIVTPDHE 66

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                + HS+ HL+ +AL  +  +     G  I             P+T+ +L +IE  +
Sbjct: 67  DALGILRHSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLPAIEAEM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTH 698
             I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G H
Sbjct: 127 MKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVD-LCRGVH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG I +  ++S   +     R
Sbjct: 186 VPSTGRIQVFKLLS---VAGAYWR 206


>gi|281420813|ref|ZP_06251812.1| alpha-amylase family protein [Prevotella copri DSM 18205]
 gi|281405105|gb|EFB35785.1| alpha-amylase family protein [Prevotella copri DSM 18205]
          Length = 730

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ++  ++ +    H+A HLL+  +  + G   S+N + I     +         T  E 
Sbjct: 579 IILNEHHKEEFPPAHTAEHLLNQLMVRLFGCDRSKN-AHIERKKSKMTFVVDHKPTRQEE 637

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
           K IE  +N +I  ++PV    ++R+   A+     L    ++ +R+V +     G +   
Sbjct: 638 KEIETEMNRLIELDMPVTYEFVDRDHIPANVKLDRLPDDASETLRLVRI-----GDYDVC 692

Query: 693 LCGGTHVSSTGEIMLLYIVS 712
            C G HV ST +I    ++ 
Sbjct: 693 PCIGKHVRSTAQIGKFVLLG 712


>gi|297544949|ref|YP_003677251.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842724|gb|ADH61240.1| threonyl-tRNA synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 634

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ ++ AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTDRPFTTEDFEAIEQEMNKIIKEDYKLERFVLPKDKAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              G  Y   +     E E+   +       LC G H+ STG +  + ++S + 
Sbjct: 148 EGKGEPYKVELIKEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLSVAG 201


>gi|239623178|ref|ZP_04666209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522545|gb|EEQ62411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 643

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 10/154 (6%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
            ++        +I H+A+H+L  A+  +        G  I  DG  +D       T  +L
Sbjct: 67  GSVQEAEDELRAIRHTASHVLAQAVKRLYPETKLAIGPAID-DGFYYDFDREGGFTPEDL 125

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
           + +E  +  I+ +NLPV   ++ R++A+           Y   +     + E    +   
Sbjct: 126 EKLEAEMTKIVKENLPVKPFVLPRDEAVRF--MEEKSEPYKVELIQDLPDEETISFYQQG 183

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               LC G H+  T  +    + S   I     R
Sbjct: 184 EFVDLCAGPHIMYTKGVKAFKLTS---IAGAYWR 214


>gi|119513050|ref|ZP_01632106.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
 gi|119462292|gb|EAW43273.1| threonyl-tRNA synthetase [Nodularia spumigena CCY9414]
          Length = 602

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 24/198 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P +  +LK+I+  +  II 
Sbjct: 23  IRHTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFSENDLKAIKKEMVKIIN 81

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + LPV+   ++RE+A      + +   Y       ++   +     G     LC G HV 
Sbjct: 82  RKLPVIREEVSREEAEKR--ISEIHEPYKLEILGDIKQEPITIYHLGNEWWDLCAGPHVE 139

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           +T ++     +   S+     R     G   ++ L                S   +    
Sbjct: 140 NTSQLNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------SPEQLAEYK 186

Query: 759 --RVEEIWEEYRKLQLIH 774
             + E +  ++RKL    
Sbjct: 187 RRKEEALRRDHRKLGKEL 204


>gi|110834994|ref|YP_693853.1| threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
 gi|110648105|emb|CAL17581.1| Threonyl-tRNA synthetase [Alcanivorax borkumensis SK2]
          Length = 638

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 83/219 (37%), Gaps = 23/219 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +    ++ +     +     I H A H++  A+  +        G  I  +G  +D   
Sbjct: 51  PIDDGATVEIITRDTDEALELIRHDAAHVMAQAVQELFPDTQVTIGPTI-ANGFYYDFHR 109

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P T  +LK+IE  + +I+ +N  +   I +R++A+A       G ++   +       
Sbjct: 110 DIPFTPDDLKTIEKRMLEIVRRNEEIRREIWDRDEAVAFFLEK--GEEFKAEIIRDLPAD 167

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIML-LYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           ++  ++       LC G H+ ST ++     +     +     R +A   Q  R +    
Sbjct: 168 QEVSLYRQGDFIDLCRGPHLPSTSKLGDGFKLTK---VAGAYWRGDADKAQLQRIYGTAW 224

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            +K K L ++LK           ++ E  ++     AK 
Sbjct: 225 RDK-KELNAYLK-----------QLEEAEKRDHRKLAKE 251


>gi|312898595|ref|ZP_07757985.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
 gi|310620514|gb|EFQ04084.1| threonyl-tRNA synthetase [Megasphaera micronuciformis F0359]
          Length = 635

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++   ++          + ++ H+A+H++  A+  +        G  I  +G  +D   
Sbjct: 50  PVKDGSTVEFLTFESQEGKDALRHTASHIMAQAVRRLFKDVKVAIGPAI-ENGFYYDFDT 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +  +IE  ++ I+ +NLPV    ++R +A+A          Y   +     E 
Sbjct: 109 EHRFTKDDFAAIEAEMHKIVKENLPVTYEEVSRAEALAMFEK--ENEIYKVELIKDLPED 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               V+       LC G HV +TG++    ++S   +     R
Sbjct: 167 ATISVYRQGDFYDLCAGPHVMTTGQVKAFKLLS---VAGAYWR 206


>gi|290512622|ref|ZP_06551988.1| threonyl and alanyl tRNA synthetase domain-containing protein
           [Klebsiella sp. 1_1_55]
 gi|289774963|gb|EFD82965.1| threonyl and alanyl tRNA synthetase domain-containing protein
           [Klebsiella sp. 1_1_55]
          Length = 209

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 74/215 (34%), Gaps = 37/215 (17%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A +  +  +  DQT F+ + GGQ  D G   G     Q+ +         +H   +    
Sbjct: 23  AEADGRYAIELDQTLFHPQGGGQPADRGWIAG-----QVVETVIVRGDSVLH---ILSQP 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     + + ID   R+  +  HSA HLL  A   +    V    +   P   R   T  
Sbjct: 75  LPLGD-VEMKIDASARQLHARLHSAGHLLGLAGEQLGWQPV---KAHHWPGEGRITFTSR 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 +  ++   V    AQ+LP      +                      +  V + 
Sbjct: 131 NNAALPDASALLAPVKAWQAQDLPRQVTFAD---------------------GLRQVGFG 169

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +   +    CGGTHV+   E+  + I S+  ++ G
Sbjct: 170 ELPAY---PCGGTHVARLAELGDIVI-SQIKMKKG 200


>gi|119945879|ref|YP_943559.1| threonyl-tRNA synthetase [Psychromonas ingrahamii 37]
 gi|166225485|sp|A1SWU5|SYT_PSYIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119864483|gb|ABM03960.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Psychromonas
           ingrahamii 37]
          Length = 635

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 67/197 (34%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  I  +G  +D+     I   EL  I   +N+++ 
Sbjct: 71  LRHSCAHLLGHAIKQLYPNAKMAIGPTI-ENGFYYDIDLDVTINDDELAKIAKRMNELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            N  VV   ++ E+A A       G  Y   +       +  G++       +C G HV 
Sbjct: 130 TNYTVVKEKVSVEEAKALFKER--GESYKLEILEGIHPDDRPGLYHHEEYIDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
                    ++  S                A       ++ L+ +       +  +   +
Sbjct: 188 VMKFCQYFKLMKVSG---------------AYWRGNSDNKMLQRIYGTAWADKKQLNAYL 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + + E  ++      K+
Sbjct: 233 KRLEEAAKRDHRKIGKQ 249


>gi|74317025|ref|YP_314765.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thiobacillus
           denitrificans ATCC 25259]
 gi|123731846|sp|Q3SK34|SYT_THIDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|74056520|gb|AAZ96960.1| threonyl-tRNA synthetase, class IIa [Thiobacillus denitrificans
           ATCC 25259]
          Length = 637

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 87/207 (42%), Gaps = 24/207 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I  DG  +D    +P T  +L+ IE  +++I+ 
Sbjct: 71  IRHDAAHVMAQAVQELYPGTQVTIGPAI-EDGFYYDFAREQPFTPEDLEKIEKRMDEIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-VVSVEYEDGGVHSS----ALCGGTHV 699
           ++LP+   + +R++A+       LG  Y  ++   V  + E+  ++       +C G H+
Sbjct: 130 RDLPIRREVWSRDEAMKVFGD--LGETYKVQIIDEVIPKGEELSIYRQGEWFDVCRGPHL 187

Query: 700 SSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
            STG++     ++              + G  A      ++  L+ +       + ++  
Sbjct: 188 PSTGKLPRAFKLMK-------------LAG--AYWRGDSKNAMLQRIYGTAWAKKEDLEA 232

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVED 785
            +  + E  ++     AK+   L+++D
Sbjct: 233 YLHRLEEAEKRDHRRLAKQLDLLHMQD 259


>gi|256844949|ref|ZP_05550407.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
 gi|256718508|gb|EEU32063.1| threonyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2]
          Length = 637

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID      +   HS  HL+  A+  +        G  I  +G  +D    +  T  +L+ 
Sbjct: 60  IDSPEGEDIVR-HSTAHLMAQAVLRLYPDTKVTIGPVI-ENGFYYDFDPVEQFTEEDLEK 117

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--- 691
           IE  +  I+ +N+ +   ++ R++AI      +   KY   +     + E    +     
Sbjct: 118 IEAEMKRIVKENIKLEKYVLPRDEAIDYF-RDVDKNKYKVEIVEAIPQGEQVSFYKQGDF 176

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
             LC GTHV STG +    +    ++     R               +++ L+ +  +  
Sbjct: 177 TDLCRGTHVPSTGYLKAFKL---RTVAGAYWR------------GNSKNKMLQRIYGY-S 220

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            S  + + +  ++ EE  K       ++L+L
Sbjct: 221 FSNEDRLKKHLKLMEEAEKRDHRKLGKELEL 251


>gi|255974800|ref|ZP_05425386.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256616698|ref|ZP_05473544.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|257081588|ref|ZP_05575949.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|257084237|ref|ZP_05578598.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257417026|ref|ZP_05594020.1| threonyl-tRNA synthetase [Enterococcus faecalis AR01/DG]
 gi|255967672|gb|EET98294.1| threonyl-tRNA synthetase [Enterococcus faecalis T2]
 gi|256596225|gb|EEU15401.1| threonyl-tRNA synthetase [Enterococcus faecalis ATCC 4200]
 gi|256989618|gb|EEU76920.1| threonyl-tRNA synthetase [Enterococcus faecalis E1Sol]
 gi|256992267|gb|EEU79569.1| threonyl-tRNA synthetase [Enterococcus faecalis Fly1]
 gi|257158854|gb|EEU88814.1| threonyl-tRNA synthetase [Enterococcus faecalis ARO1/DG]
 gi|295113730|emb|CBL32367.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterococcus sp.
           7L76]
          Length = 645

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 13/205 (6%)

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PF  ++G    D   +I + +  +    +     I +   IVE G L      ++T D++
Sbjct: 14  PF--DSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLE-----IVTPDHE 66

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +   +   HS+ HL+ +AL  +  +     G  I             P+T+ +L +IE  
Sbjct: 67  DALGILR-HSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLPAIEAE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           +  I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G 
Sbjct: 126 MMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVD-LCRGV 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I +  ++S   +     R
Sbjct: 185 HVPSTGRIQVFKLLS---VAGAYWR 206


>gi|154687027|ref|YP_001422188.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42]
 gi|166223321|sp|A7Z7I1|SYT_BACA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154352878|gb|ABS74957.1| ThrS [Bacillus amyloliquefaciens FZB42]
          Length = 643

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 103/261 (39%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      I  R  ++ + ++ +  +        
Sbjct: 20  GTTTEDIAASISPGLK------KKSLAGKLNGQEIDLRTPIQEDGAVEIITEGTEEGLNI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I    V      +  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIY-KDVKFGVGPVIENGFYYDVEMEQALTPDDLPKIEKEMKRIVG 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NLP++ + ++R++A A    A +G      +     E E   ++       LC G HV 
Sbjct: 133 ENLPIIRKEVSRDEAKAMF--AEIGDNLKLELLDAIPEDETVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG+I    ++S             + G  A      +++ L+ +       + ++   +
Sbjct: 191 STGKIKEFKLLS-------------LAG--AYWRGDSKNQMLQRIYGTAFFKKDDLKEHL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
             + EE ++       ++L+L
Sbjct: 236 -RMLEEAKERDHRKLGKELKL 255


>gi|330009331|ref|ZP_08306508.1| threonine/alanine tRNA ligase second additional domain protein
           [Klebsiella sp. MS 92-3]
 gi|328534829|gb|EGF61374.1| threonine/alanine tRNA ligase second additional domain protein
           [Klebsiella sp. MS 92-3]
          Length = 209

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 73/215 (33%), Gaps = 37/215 (17%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A +  +  +  D+T F+ + GGQ  D G   G     Q+ +         +H   +    
Sbjct: 23  AEADGRYAIELDRTLFHPQGGGQPADRGWIAG-----QVVETVVVRGERVLH---ILSQP 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     + + ID   R+  +  HSA HLL  A   +    V    +   P   R      
Sbjct: 75  LPLG-EVEMKIDASARQLHARLHSAGHLLGLAGEQLGWQPV---KAHHWPGEGRITFASR 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 +  ++   V    AQ+LP      N                      +  V + 
Sbjct: 131 NSAALPDASALLALVKAWQAQDLPRQVTFAN---------------------GMRKVGFG 169

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +   +    CGGTHV+   E+  + I S+  ++ G
Sbjct: 170 ELPAY---PCGGTHVARLAELGDIVI-SQIKMKKG 200


>gi|323704478|ref|ZP_08116056.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535940|gb|EGB25713.1| threonyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 634

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ +++   H+++H++  A+  +  +     G  I  +G  +D    +P T  +
Sbjct: 58  ILTFDDEDGKKI-YWHTSSHIMAQAIKRLYKNVKLTIGPAID-NGFYYDFDVDEPFTVDD 115

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              IED +N II ++L +   ++ RE+AI        G  Y   +     +      +  
Sbjct: 116 FSKIEDEMNKIIKEDLKLERFVLPREEAIKF--MEEKGEPYKVELIKDLPQDATISFYRQ 173

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                LC G H+ STG +  + ++S   +     R
Sbjct: 174 GEFTDLCAGPHLPSTGMVKSIKLLS---VAGAYWR 205


>gi|167037181|ref|YP_001664759.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115599|ref|YP_004185758.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856015|gb|ABY94423.1| threonyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319928690|gb|ADV79375.1| threonyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 634

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ ++ AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTDRPFTTEDFEAIEQEMNKIIKEDYKLERFVLPKDKAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              G  Y   +     E E+   +       LC G H+ STG +  + ++S + 
Sbjct: 148 EGKGEPYKVELIKEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLSVAG 201


>gi|257091083|ref|ZP_05585444.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
 gi|256999895|gb|EEU86415.1| threonyl-tRNA synthetase [Enterococcus faecalis CH188]
          Length = 645

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 13/205 (6%)

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PF  ++G    D   +I + +  +    +     I +   IVE G L      ++T D++
Sbjct: 14  PF--DSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLE-----IVTPDHE 66

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +   +   HS+ HL+ +AL  +  +     G  I             P+T+ +L +IE  
Sbjct: 67  DALGILR-HSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLPAIEAE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           +  I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G 
Sbjct: 126 MMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVD-LCRGV 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I +  ++S   +     R
Sbjct: 185 HVPSTGRIQVFKLLS---VAGAYWR 206


>gi|255994452|ref|ZP_05427587.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
 gi|255993165|gb|EEU03254.1| threonine--tRNA ligase [Eubacterium saphenum ATCC 49989]
          Length = 581

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 22/198 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+++H++  A+  +        G  I  DG  +DV     IT  +LK I+  +  II
Sbjct: 16  AYRHTSSHIMAQAIKRLWPEAKLAIGPAI-KDGFYYDVDLDHKITDDDLKKIQKEMKKII 74

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             N P+   I++R+ A+           Y   +       E+   ++      LC G HV
Sbjct: 75  KANYPLEKSILSRDKALE--LMRQKDEDYKVELINDLPSDEEISFYTQGEFTDLCAGPHV 132

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG+I  + ++S   +     R               +++ L+ +      SQ  +   
Sbjct: 133 ESTGKIKAIKLMS---VAGAYWR------------GNEKNKMLQRVYGTAFSSQEELQEY 177

Query: 760 VEEIWEEYRKLQLIHAKR 777
           ++ I E  ++      K 
Sbjct: 178 IDRIEEAKKRDHRKIGKE 195


>gi|307545104|ref|YP_003897583.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
 gi|307217128|emb|CBV42398.1| threonyl-tRNA synthetase [Halomonas elongata DSM 2581]
          Length = 632

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   + IT  +L++IE  +  +I 
Sbjct: 71  IRHSCAHLIGHAVKQLYPDAKMAIGPVI-EDGFYYDIDFGRSITPEDLEAIEARMKSLIE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
               VV   ++R+ A+ +         Y   +     E E   ++       +C G HV 
Sbjct: 130 TGYDVVREYVDRDRAMLTFLHR--DEPYKQEIVREIPEGETIRLYHHQEYTDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +     +     R +A      R +     +K K L ++LK          
Sbjct: 188 NTRHLKAFKLTK---LAGAYWRGDAERPMLTRIYGTAWGDK-KQLKAYLK---------- 233

Query: 761 EEIWEEYRKLQLIHAKR 777
             + E  ++     A++
Sbjct: 234 -RLEEAEKRDHRKLARK 249


>gi|285017864|ref|YP_003375575.1| threonyl-tRNA synthetase (threonine--tRNA ligase) protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473082|emb|CBA15587.1| probable threonyl-trna synthetase (threonine--trna ligase) protein
           [Xanthomonas albilineans]
          Length = 634

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+  ++P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEAKMVIGPVI-AEGFYYDIYSARPFTPEDMAAIERRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I        G  Y      D    V+            +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFQQR--GEDYKLRLIADMPEDVTAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|15606769|ref|NP_214149.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
 gi|8928367|sp|O67583|SYT_AQUAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2984004|gb|AAC07549.1| threonyl-tRNA synthetase [Aquifex aeolicus VF5]
          Length = 638

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 24/249 (9%)

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G   ++  ++    G+     I  +  +R    +             + HS  H++  AL
Sbjct: 22  GKIFELAGIKDALGGVINGKIIDLQTPVRESGEIKPVYRGSKESLEIMRHSLAHIMAQAL 81

Query: 598 STILGSHVSQNG-SCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
             + G+     G    T +G  +DV      IT  +L  IE  + +II ++ P++ R ++
Sbjct: 82  KELYGAKKVHLGVGPTTEEGFYYDVEVEGHKITEEDLPKIEQKMKEIIERDYPILRRELS 141

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIV 711
           RE+AI       L  KY   +     E E   V+       LC G H+ STG+     + 
Sbjct: 142 REEAIKLFDK--LKEKYKIDIIKEIPEEEVISVYEQGDFIDLCKGPHLPSTGKAGAFKLT 199

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           S S                A         +L  +      S   V  R+ + +EE +K  
Sbjct: 200 SISG---------------AYWKGRSDQPQLTRIYGIAYWSDKEVKERL-KFYEEVKKRD 243

Query: 772 LIHAKRKLQ 780
                ++L+
Sbjct: 244 HRRLGKELE 252


>gi|313680219|ref|YP_004057958.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
 gi|313152934|gb|ADR36785.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Oceanithermus
           profundus DSM 14977]
          Length = 649

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 72/205 (35%), Gaps = 30/205 (14%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST------ILGSHVSQNGSCITPDGL 617
            L    ++ +        Q    H+  H++  A+             V      +  +G 
Sbjct: 49  PLPEGATVQILTRKDPEYQQLFRHTLAHVMAQAVKEFFAKKGYDPEEVKLGIGPVIENGF 108

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +D+   +PI+ A+L  IE  ++ II +NLP+   ++ RE+A+A          Y   + 
Sbjct: 109 YYDIDAPEPISDADLPEIEKLMHRIIKRNLPLRRYVLEREEALARYRGK---DPYKTELI 165

Query: 678 VVSVEYEDGGVHSSA----LCGGTHVSSTGEIML-LYIVSESSIRAGIRR---------- 722
               E E+   +       LC G HV STG+I     +     +     R          
Sbjct: 166 EDLPEGEEISFYEQEGFTDLCRGPHVPSTGKIPPHFKLT---HVAGAYWRGDESRPMLQR 222

Query: 723 ---IEAITGQRARSHLMGQDEKLKS 744
              +   T +    +L   +E  K 
Sbjct: 223 IYGVAFRTKEELEHYLWQLEEAKKR 247


>gi|144899402|emb|CAM76266.1| Threonyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 638

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D     P    +L+ IE  + +I+ 
Sbjct: 72  LRHDAAHVMAEAVKELYPETQVTIGPSI-ENGFYYDFARPTPFGPEDLEKIEARMREIVD 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  +     NR+DA+A      LG KY   +       +  G++       LC G H+ 
Sbjct: 131 RDEAITREEWNRDDAVAFFEG--LGEKYKAEIIASIPADQPIGLYRQGNFIDLCRGPHLP 188

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST ++          +     R
Sbjct: 189 STAKLG--KAFKLMKLAGAYWR 208


>gi|294789007|ref|ZP_06754247.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
 gi|294483109|gb|EFG30796.1| threonine--tRNA ligase [Simonsiella muelleri ATCC 29453]
          Length = 638

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 23/219 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ +           I HS  HL+ HA+  +  +     G  I  +G  +D+  
Sbjct: 50  PITEDATVQIITPKDQDGVEIIRHSCAHLVGHAVKQLFPNAKMVIGPVID-EGFYYDIAT 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRV 678
            KP T  ++ +IE+ +  +I Q+  V+ ++  R + I        G +Y      D    
Sbjct: 109 EKPFTPEDMAAIEERMKQLINQDYDVIKKMTPRAEVIEIFKNR--GEEYKLRLIDDMADD 166

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           ++            +C G HV +T  +    +   S                A       
Sbjct: 167 ITEMGMYFHQEYVDMCRGPHVPNTRFLKHFKLTKMSG---------------AYWRGDSN 211

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +E+L+ +      ++  +   +  I E  ++      K+
Sbjct: 212 NEQLQRIYGTAWANKDELKAYITRIEEAEKRDHRKLGKQ 250


>gi|254522893|ref|ZP_05134948.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
 gi|219720484|gb|EED39009.1| threonyl-tRNA synthetase [Stenotrophomonas sp. SKA14]
          Length = 633

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 75/171 (43%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPDVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEKRMGELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + +    A   G  Y  R+   +S + +  G++       +C G HV
Sbjct: 130 QDYDVIKKMTPRAEVVEIFKAR--GEDYKLRLIEDMSDDIQAMGMYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +T  +    +     I     R +A   Q  R +     +K K L +++K
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAQNEQLQRIYGTAWADK-KQLEAYIK 234


>gi|294786915|ref|ZP_06752169.1| threonine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315226550|ref|ZP_07868338.1| threonine--tRNA ligase [Parascardovia denticolens DSM 10105]
 gi|294485748|gb|EFG33382.1| threonine--tRNA ligase [Parascardovia denticolens F0305]
 gi|315120682|gb|EFT83814.1| threonine--tRNA ligase [Parascardovia denticolens DSM 10105]
          Length = 687

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 78/259 (30%), Gaps = 44/259 (16%)

Query: 527 QLGDTGCAIGDGIRLQITDVQ---------KKAEGI-FVHHAIVERGILRTEMSLV-LTI 575
           Q         +G   ++ D           K    +    H       L     +  + +
Sbjct: 3   QAPSLIPITVNGEHREVEDTTTGVELFESDKNIIAVRINGHPRDLYAPLHAGDKVESIAL 62

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D ++   +   HSATH++  A+  I        G  I  +G  +D    +P T  +LK I
Sbjct: 63  DSEDGLAIMR-HSATHVMAQAVQEIYPDAKLGIGPVID-NGFYYDFDVERPFTPEDLKEI 120

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-------TKYNDRVRVVSVEYEDGGV 688
           E  +  II  +     R+++ E A    A                D+ +   V      +
Sbjct: 121 EKRMQRIIKSSQSFRRRVVSEEAARQEEADQPYKLELICSAENAIDQGKDTGVSQGQLSM 180

Query: 689 HSS----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIR----------RIEAITG 728
           + +           LC G H+ +T  I    +                     RI   T 
Sbjct: 181 YDNMDREGKVVWTDLCHGPHLPNTRYIKAFKL---ERTAGAYWRGSEKNPMLQRIYG-TA 236

Query: 729 QRARSHLMGQDEKLKSLAS 747
             ++  +     +L+  A 
Sbjct: 237 WASKEDMKAYLARLEEAAK 255


>gi|300716458|ref|YP_003741261.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
 gi|299062294|emb|CAX59411.1| Threonyl-tRNA synthetase [Erwinia billingiae Eb661]
          Length = 642

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++ +  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIEQLEKRMHQLAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TNYDVIKKKVSWQEARDAFAAR--GETYKITILDENISHDDQPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     I     R ++      R +     +K K LA++L
Sbjct: 188 PNMRFCHHFKL---QKISGAYWRGDSNNKMLQRIYGTAWADK-KQLAAYL 233


>gi|260891090|ref|ZP_05902353.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
 gi|260859117|gb|EEX73617.1| threonine--tRNA ligase [Leptotrichia hofstadii F0254]
          Length = 636

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 18/174 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  +     G  I  +G  +D    KP T  +L  IE+ +  I+ 
Sbjct: 71  IRHSAAHIMAQAVQRLFPNTKVTIGPVI-ENGFFYDFDPEKPFTEEDLAKIEEEMTKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N       M  E+A    A    G  Y     +  +  +   ++       LC GTH+ 
Sbjct: 130 ENYEFKRSEMTAEEAKKFFAEK--GETYKVE-IIEDLGADKVSIYQQGEFIDLCRGTHIP 186

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           STG +    ++S +       S    ++RI      T +    +L   +E  K 
Sbjct: 187 STGYLKAFKLMSTAGAYWRGDSNNKMLQRIYGVAFATKKELDDYLTMMEEAEKR 240


>gi|257791654|ref|YP_003182260.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
 gi|257475551|gb|ACV55871.1| threonyl-tRNA synthetase [Eggerthella lenta DSM 2243]
          Length = 637

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 95/271 (35%), Gaps = 25/271 (9%)

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I     +     +    S+ +     +     + HS  H++  AL  + G      G  I
Sbjct: 38  IVNDQPVDLSAPVAEGDSVAIVTAKSDEGLELLRHSTAHVMAAALVDLYGDVQFGVGPAI 97

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TK 671
             DG  +DV   + ++  +  +IE  + +I+  +     R++ R +A    A+       
Sbjct: 98  -EDGFYYDVKLDRALSPDDFAAIEARMAEIVKADEAFERRVVTRAEAEEIFASQPFKLEL 156

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             +      +     G  +  LC G H+ STG++    +     +     R +A      
Sbjct: 157 IAELPEDAVITTYTIGKFTD-LCRGPHLPSTGKLGAFKLTK---LAGAYWRGDA------ 206

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 + E L  +       Q  +   +  + E  ++       RKL   +   +   +
Sbjct: 207 ------EREMLTRIYGTAFFKQKELDEHLRNLEEAEKRDH-----RKLGRELGIYTMDPL 255

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           A V    ++     ++ ++++ + L++ +  
Sbjct: 256 AGVGLPMYLPKG--ARVIRTMQEWLRRDLYE 284


>gi|256963904|ref|ZP_05568075.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
 gi|256954400|gb|EEU71032.1| threonyl-tRNA synthetase [Enterococcus faecalis HIP11704]
          Length = 645

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 13/205 (6%)

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PF  ++G    D   +I + +  +    +     I +   IVE G L      ++T D++
Sbjct: 14  PF--DSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLE-----IVTPDHE 66

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +   +   HS+ HL+ +AL  +  +     G  I             P+T+ +L +IE  
Sbjct: 67  DALGILR-HSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDLPAIEAE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           +  I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G 
Sbjct: 126 MMKIVKENNPIVRKEISRAEALEVFADDPYKVELITDLPEDEIITIYDQGDFVD-LCRGV 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I +  ++S   +     R
Sbjct: 185 HVPSTGRIQVFKLLS---VAGAYWR 206


>gi|87303299|ref|ZP_01086092.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
 gi|87282194|gb|EAQ74155.1| Threonyl-tRNA synthetase, class IIa [Synechococcus sp. WH 5701]
          Length = 603

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 27/242 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I HS +H+L  A+  +  S     G   T +G  +D  + +P T A+LK+I+  +  I
Sbjct: 22  LRIRHSMSHVLAMAVQKLFPSSQVTIGPW-TENGFYYDFDNPEPFTEADLKAIKKEMGKI 80

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHV 699
           IA+ LP+    ++RE A A   A      Y   +       +     G     LC G HV
Sbjct: 81  IARKLPLQRLEVSREQAEARIKAQ--NEPYKLEILAGIQEPITLYTLGDEWWDLCAGPHV 138

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           ++T E+         S+     R     G   R+ L             L          
Sbjct: 139 ANTSELNP-KAFELESVAGAYWR-----GDETRAQLQRIYGTAWQTPEQL---------- 182

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                 EY+  +    +R  +    DL    I D      +        ++ +++   ++
Sbjct: 183 -----AEYKHRKQEALRRDHRRLGTDLQLFSIEDEAGAGLVFWHPRGARMRLLIEDFWRQ 237

Query: 820 IQ 821
             
Sbjct: 238 AH 239


>gi|188577599|ref|YP_001914528.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522051|gb|ACD59996.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 649

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 86  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQALIA 144

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y  R+   +S +    G++       +C G HV
Sbjct: 145 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIDDMSDDITAMGLYYHQEYVDMCRGPHV 202

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 203 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 255


>gi|78486008|ref|YP_391933.1| threonyl-tRNA synthetase [Thiomicrospira crunogena XCL-2]
 gi|123769059|sp|Q31F14|SYT_THICR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78364294|gb|ABB42259.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Thiomicrospira
           crunogena XCL-2]
          Length = 642

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 17/194 (8%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +  +  L L           + HS  HLL HAL  +  +     G  +  +G  +D+   
Sbjct: 51  ITEDAELQLITLKDEDGLHIMRHSCAHLLGHALKQLYPAAKMAIGPVV-ENGFYYDIDME 109

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + IT  +LK IE  + ++      V+  +  R +A+A+         Y   +     +  
Sbjct: 110 EKITPEDLKQIEKRMKELAKTKYEVIKEMTPRAEALATFKER--QEDYKVELIEDMPDET 167

Query: 685 DGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT---GQR 730
           + G++       +C G HV + G I    +   +            ++RI  +     Q 
Sbjct: 168 EFGLYHHQEYIDMCRGPHVPNMGFIKAFKLTHVAGAYWRGNSDNKMLQRIYGVAFADKQE 227

Query: 731 ARSHLMGQDEKLKS 744
            + +L   +E  K 
Sbjct: 228 LKDYLRMMEEAEKR 241


>gi|257420184|ref|ZP_05597178.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
 gi|257162012|gb|EEU91972.1| threonyl-tRNA synthetase [Enterococcus faecalis T11]
          Length = 645

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 13/205 (6%)

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PF  ++G    D   +I + +  +    +     I +   IVE G L      ++T D++
Sbjct: 14  PF--DSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLE-----IVTPDHE 66

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +   +   HS+ HL+ +AL  +  +     G  I             P+T+ +L +IE  
Sbjct: 67  DALGILR-HSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGKSPVTAEDLPAIEAE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           +  I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G 
Sbjct: 126 MMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITVYDQGDFVD-LCRGV 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I +  ++S   +     R
Sbjct: 185 HVPSTGRIQVFKLLS---VAGAYWR 206


>gi|303242609|ref|ZP_07329085.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
 gi|302589866|gb|EFL59638.1| threonyl-tRNA synthetase [Acetivibrio cellulolyticus CD2]
          Length = 635

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 75/200 (37%), Gaps = 22/200 (11%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           + +  H+ +H++  A+  +  +     G  I  +G  +D    KP +  EL  IE+ +  
Sbjct: 68  RHAYRHTTSHIMAQAVKNLYPNVKLAIGPAID-NGYYYDFDVEKPFSVEELAQIEEEMKK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+ ++L +    + R++AI        G  Y   +     E E    +       LC G 
Sbjct: 127 IVKEDLKLERFTLPRDEAIKF--MEEKGEPYKVELIRDLPEGEIISFYKQGDFVDLCAGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ STG+I    ++S   +     R               +++ L+ +       + ++ 
Sbjct: 185 HLESTGKIKAFKLLS---VAGAYWR------------GNEKNKMLQRIYGTAFSKKSDLD 229

Query: 758 GRVEEIWEEYRKLQLIHAKR 777
             +  + E  ++      K 
Sbjct: 230 DYLFRLEEAKKRDHRKLGKE 249


>gi|300716343|ref|YP_003741146.1| hypothetical protein EbC_17640 [Erwinia billingiae Eb661]
 gi|299062179|emb|CAX59295.1| uncharacterized protein [Erwinia billingiae Eb661]
          Length = 210

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 83/225 (36%), Gaps = 41/225 (18%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
              +  V+   T F+ + GGQ  D G                + +G   H+     G + 
Sbjct: 25  DDGRFRVILAATLFHPQGGGQPSDRGTLDTAD-----MLHAAQEDGEIAHY---TDGPVA 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS--CITPDGLRFDVTHS 624
               + + +D   RR  S  HSA H +      + G     +GS     P   R     +
Sbjct: 77  PG-PVHIKVDETLRRLHSHYHSAGHFIA-----VAGERFGWHGSKGNHRPGEARVVFEPT 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +  T    + I  +V +I+A++LP    I+                   D  R V+    
Sbjct: 131 EQKTPVTAEQIAADVAEIVARDLPRQLTIV-------------------DGRREVT---- 167

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             G   +  CGGTHV ST E+ L+ IV  S  + G+  ++   G+
Sbjct: 168 -WGDLPAYACGGTHVVSTAEVGLVRIVKISE-KKGVMTVKYEVGE 210


>gi|237736526|ref|ZP_04567007.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
 gi|229421568|gb|EEO36615.1| threonyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817]
          Length = 638

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D    +  T  +L  IE  +  I+ 
Sbjct: 71  IRHSTAHLMAQAVVRLFPGTKVAIGPAI-ENGFYYDFDPKEQFTEEDLAKIEAEMKKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +   +M REDAI       LG +Y   +     + E    +       LC G HV 
Sbjct: 130 ENEKIERVMMTREDAIKHFE--ELGEEYKVEIIKEIAQGEMLSFYKQGEFMDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG-------QRARSHLMGQDEKLKSLASFLKVSQ 753
           ST  +    +    S+     R     G       QR        ++KLK   + L+ ++
Sbjct: 188 STSYLKAFKL---KSVAGAYWR-----GNSDNKMLQRIYGFAFADEKKLKDYLTLLEEAE 239

Query: 754 G 754
            
Sbjct: 240 K 240


>gi|311279396|ref|YP_003941627.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
 gi|308748591|gb|ADO48343.1| threonyl-tRNA synthetase [Enterobacter cloacae SCF1]
          Length = 642

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPNTKMAIGPVVD-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKNVSWHEARETFVKR--GETYKVSILDENIAHDDKPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|258515613|ref|YP_003191835.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779318|gb|ACV63212.1| threonyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771]
          Length = 634

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 14/144 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS++H+L  A+  +        G  I  DG  +D       T A+++ IE  +N II 
Sbjct: 71  YRHSSSHVLAQAVQRLFPGTKLAIGPAI-KDGFYYDFDSEHKFTPADMEKIEAEMNKIIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR------VVSVEYEDGGVHSSALCGGTH 698
           +N P     ++R +AI       L  KY   +        V   YE GG     LC G H
Sbjct: 130 ENQPFKRFELSRAEAIDKFTD--LDEKYKVELINDLPGDAVISCYEQGGW--CDLCAGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V S      L  V  +S+     R
Sbjct: 186 VPS---TGSLKAVKLTSLAGAYWR 206


>gi|188581528|ref|YP_001924973.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
 gi|179345026|gb|ACB80438.1| threonyl-tRNA synthetase [Methylobacterium populi BJ001]
          Length = 675

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  +
Sbjct: 66  RALELIRHDCAHVLAEAVQALWPGTQVTIGPVI-ENGFYYDFAKDEPFTPEDFPKIEAKM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II+++ P    +  R+D  A  A    G +Y   +       ED  ++       LC 
Sbjct: 125 REIISRDAPFTKEVWTRDDVKALFAEK--GERYKVELVDAIPAGEDLKIYRQGEWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           G H++STG++     ++    +     R +A
Sbjct: 183 GPHMTSTGKVGTAFKLMK---VAGAYWRGDA 210


>gi|116252274|ref|YP_768112.1| threonyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841]
 gi|123261550|sp|Q1MGA7|SYT_RHIL3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115256922|emb|CAK08016.1| putative threonyl-tRNA synthetase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 661

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE 
Sbjct: 66  DDRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFAKNEPFTLDDLPKIEK 124

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----AL 693
            + +IIA+N     ++ +R+ A    A    G +Y   +     E +D  ++       L
Sbjct: 125 KMKEIIARNAAFTKQVWSRDRAKQVFADK--GEQYKVELVDAIPEGQDLKIYYQGDWFDL 182

Query: 694 CGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           C G H++STG+I     ++    +     R
Sbjct: 183 CRGPHMASTGQIGSAFKLLK---VAGAYWR 209


>gi|299822779|ref|ZP_07054665.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
 gi|299816308|gb|EFI83546.1| threonine--tRNA ligase [Listeria grayi DSM 20601]
          Length = 640

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 17/234 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      +     +  +  + +           
Sbjct: 16  GVSTADIAASISPGLK------KKALAGKINGELVDLATPIEEDGKIEIVTPDHEDALGI 69

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  AL  +        G  I   G  +DV   +PI+      IE  +  I+ 
Sbjct: 70  LRHSTAHLLAQALKRLYPDIKFGVGPAIET-GFYYDVDTEEPISEESFPVIEKEMQKIVR 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NLP+V  +++RE+AI    A  +G  Y   +       E   ++S      LC G HV 
Sbjct: 129 ENLPIVREVVSREEAIKRFEA--IGDHYKLELIEAIPADETVTIYSQGEFFDLCRGIHVP 186

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           STG++ +  ++   ++     R ++      R +     +K K L +FLK+ + 
Sbjct: 187 STGKLQVFQLL---NVAGAYWRGDSNNKMLQRIYGTAFFDK-KDLKAFLKMQEE 236


>gi|317487879|ref|ZP_07946471.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325830610|ref|ZP_08164031.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
 gi|316913005|gb|EFV34522.1| threonyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA]
 gi|325487356|gb|EGC89798.1| threonine--tRNA ligase [Eggerthella sp. HGA1]
          Length = 637

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 95/271 (35%), Gaps = 25/271 (9%)

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           I     +     +    S+ +     +     + HS  H++  AL  + G      G  I
Sbjct: 38  IVNDQPVDLSAPVAEGDSVAIVTAKSDEGLELLRHSTAHVMAAALVDLYGDVQFGVGPAI 97

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TK 671
             DG  +DV   + ++  +  +IE  + +I+  +     R++ R +A    A+       
Sbjct: 98  -EDGFYYDVKLDRALSPDDFAAIEARMAEIVKADEAFERRVVTRAEAEEIFASQPFKLEL 156

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             +      +     G  +  LC G H+ STG++    +     +     R +A      
Sbjct: 157 IAELPEDAVITTYTIGKFTD-LCRGPHLPSTGKLGAFKLTK---LAGAYWRGDA------ 206

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                 + E L  +       Q  +   +  + E  ++       RKL   +   +   +
Sbjct: 207 ------EREMLTRIYGTAFFKQKELDEHLRNLEEAEKRDH-----RKLGRELGIYTMDPL 255

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           A V    ++     ++ ++++ + L++ +  
Sbjct: 256 AGVGLPMYLPKG--ARVIRTMQEWLRRDLYE 284


>gi|194366578|ref|YP_002029188.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
 gi|238693469|sp|B4SQH4|SYT_STRM5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194349382|gb|ACF52505.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 633

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSSAHLVGHAVKQLYPDVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEKRMGELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I    A   G  Y  R+   +S + +  G++       +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEIFKAR--GEDYKLRLIEDMSDDIQAMGMYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +T  +    +     I     R +A   Q  R +     +K K L +++K
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAQNEQLQRIYGTAWADK-KQLEAYIK 234


>gi|239831910|ref|ZP_04680239.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239824177|gb|EEQ95745.1| threonyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 674

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 52  KKAVAYAVDGTVRDLSDPLGASGKVEILTREDPRALELIRHDTAHVLAEAVQELFPGTQV 111

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    I +RE A    A  
Sbjct: 112 TIGPVI-ENGFYYDFARNEPFTPDDLPVIEKKMREIIQRNKPFTKEIWSREKAKQVFADK 170

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 171 --GENYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 225

Query: 722 RIEA 725
           R +A
Sbjct: 226 RGDA 229


>gi|296388793|ref|ZP_06878268.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAb1]
          Length = 640

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +I+  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVI-EEGFYYDIFFERPFTPEDMAAIQQRMRELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKMTPRAEVIELFKSR--GEDYKLRLIDDMPDEKAMGLYFHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKAFQLTKISG---------------AYWRGDSKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 233 QRIEEAEKRDHRRIGKQ 249


>gi|147835149|emb|CAN65674.1| hypothetical protein VITISV_002009 [Vitis vinifera]
          Length = 1260

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D    +P+T
Sbjct: 93  EKIVLPTNESSERLLRIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLT 150

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDG 686
             +LK I+  ++ II +NLP++   ++R++A     A     K    D ++   +     
Sbjct: 151 DKDLKRIKKEMDRIIGRNLPLIREEVSRDEAQRRIMAVNEPYKMEILDSIQEDPITXYHI 210

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G     LC G HV  TG I     V   S+     R +       R +    + + + L 
Sbjct: 211 GGEWWDLCAGPHVEYTGNICNRKAVELESVAGAYWRGDEKKQMLQRIYGTAWENE-EQLK 269

Query: 747 SFLKVSQG 754
           ++L   + 
Sbjct: 270 AYLHFKEE 277


>gi|15597940|ref|NP_251434.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|116050734|ref|YP_790445.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891076|ref|YP_002439942.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|254241197|ref|ZP_04934519.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|313107813|ref|ZP_07793987.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
 gi|22654141|sp|Q9I099|SYT_PSEAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122259859|sp|Q02NP1|SYT_PSEAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701406|sp|B7V188|SYT_PSEA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9948822|gb|AAG06132.1|AE004702_9 threonyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
 gi|115585955|gb|ABJ11970.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126194575|gb|EAZ58638.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 2192]
 gi|218771301|emb|CAW27066.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa LESB58]
 gi|310880489|gb|EFQ39083.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa 39016]
          Length = 640

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +I+  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVI-EEGFYYDIFFERPFTPEDMAAIQQRMRELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKMTPRAEVIELFKSR--GEDYKLRLIDDMPDEKAMGLYFHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKAFQLTKISG---------------AYWRGDSKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 233 QRIEEAEKRDHRRIGKQ 249


>gi|114570943|ref|YP_757623.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Maricaulis
           maris MCS10]
 gi|122315357|sp|Q0AM08|SYT_MARMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114341405|gb|ABI66685.1| Ser-tRNA(Thr) hydrolase [Maricaulis maris MCS10]
          Length = 644

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 23/229 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  +  + +     ++    I H   H+L  A+  +        G  I  DG  +D   
Sbjct: 50  PLDGDAQVAIITRKDDKALEVIRHDTAHILAQAVQDLFPGTQVTIGPAI-EDGFYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           S+P T  + ++IE  + +I+  +LP    + +R DAIA      +G  Y   +     E 
Sbjct: 109 SEPFTPEDFEAIEKRMGEIVDADLPFEREVWDRNDAIAKFE--EMGEAYKAELIRDLPED 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E   ++       LC G H+ STG+I          +     R +       R +     
Sbjct: 167 ETITIYRQGEWFDLCLGPHLPSTGKIG--KAFKLMKVAGAYWRGDHRNAMLQRIYGTAWA 224

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEY-----RKLQLIHAKRKLQLNV 783
           +  K L + L         R+EE  +       ++++L H + + Q  V
Sbjct: 225 DD-KQLKAHL--------HRIEEAEKRDHRKLGKQMELFHFQEEAQGQV 264


>gi|152988735|ref|YP_001347870.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
 gi|166225481|sp|A6V485|SYT_PSEA7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150963893|gb|ABR85918.1| threonyl-tRNA synthetase [Pseudomonas aeruginosa PA7]
          Length = 640

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +I+  + ++I 
Sbjct: 71  IRHSCAHLVGHAVKQLYPTAKMVIGPVI-EEGFYYDIFFERPFTPEDMAAIQQRMRELID 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 130 KDYDVIKKMTPRAEVIELFKSR--GEDYKLRLIDDMPDEKAMGLYFHEEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 188 NTRFLKAFQLTKISG---------------AYWRGDSKNEQLQRIYGTAWADKKQLAAYI 232

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 233 QRIEEAEKRDHRRIGKQ 249


>gi|328957059|ref|YP_004374445.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
 gi|328673383|gb|AEB29429.1| threonine--tRNA ligase [Carnobacterium sp. 17-4]
          Length = 645

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    +     L     + +           + HS  HL+ +AL  +      
Sbjct: 35  KKALAGKFNGELVDLVRPLEVNGEIEIITPDHEDALQILRHSTAHLMANALRRLYPDIKF 94

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I+  G  +D     PIT  ++  IE  +  I+ +N P+V + + RE+A+      
Sbjct: 95  GVGPAIST-GFYYDTDSEAPITDEDIPKIEAEMMAIVKENNPIVRKEVTREEALEIF--- 150

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
                Y   +     E E   V+       LC G HV STG I +  ++S + 
Sbjct: 151 -KDDPYKVELITALPESEKITVYDQGDFVDLCRGVHVPSTGRIQVFKLLSLAG 202


>gi|229916382|ref|YP_002885028.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
 gi|259516484|sp|C4L461|SYT_EXISA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229467811|gb|ACQ69583.1| threonyl-tRNA synthetase [Exiguobacterium sp. AT1b]
          Length = 647

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 82/212 (38%), Gaps = 25/212 (11%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGS--HVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           D ++   L   HS+ HL+  A+  + G   ++         +G  +D+   + I   +L 
Sbjct: 65  DSEDGLDLMR-HSSAHLMAQAIKRLYGEDNNIYLGIGPTIENGFYYDIEMDRRINEEDLP 123

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
            IE  +  I+ +NL +   +++R++A+A      LG      +       +   ++    
Sbjct: 124 EIEKMMKRIVDENLEITREVVSRDEALARY--KELGDPLKIELIEDIPADQTLTIYHQGE 181

Query: 692 --ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              LC G HV ST ++ +  ++S   +     R                ++ L+ +    
Sbjct: 182 FFDLCRGPHVPSTSKLKIFKLMS---VAGAYWR------------GDSDNKMLQRIYGTA 226

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++  +   +  + EE ++       ++L L
Sbjct: 227 WATKEQLAEHL-RLLEEAKERDHRKLGKELDL 257


>gi|288574759|ref|ZP_06393116.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570500|gb|EFC92057.1| threonyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 630

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 27/209 (12%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAE---GIFVHHAIVERGILRTEMSLVLTI-----DYQNR 580
           G  G  + +  +  + D+ K+ +   G        E   L  E+S   ++     D +  
Sbjct: 6   GPAGQLL-ESEKAVVGDILKEWKLDKGALAAKVNGEELDLDVEVSCDASVEPITSDTEEG 64

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            ++   HS  HLL  A + +    V   G  I  DG  +D+   +PI+ A+L ++E  + 
Sbjct: 65  LEILR-HSTAHLLAQAATRLFPGAVVAIGPVI-KDGFYYDIEFKEPISEADLPALEKEMR 122

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSAL 693
            I+ + +P+  + ++RE+AI      L   +  D  +V  +E  D              L
Sbjct: 123 RIVKRGIPLKRQRVSREEAIE-----LFKER-KDLYKVEILEGIDDDSVNLYWQDEYVDL 176

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           C G HV +T  +    ++S   +     R
Sbjct: 177 CRGPHVPNTRVLQNFKLLS---VAGAYWR 202


>gi|166711588|ref|ZP_02242795.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 634

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQALIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y  R+   +S +    G++       +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIDDMSDDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|296331396|ref|ZP_06873868.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305676383|ref|YP_003868055.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151511|gb|EFG92388.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305414627|gb|ADM39746.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 638

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K A G      +     L  +  L ++T+D Q   Q+   H++ H+L  A+  + G  V
Sbjct: 36  KKAAAGQVNGKLVDLSFKLEEDAELSIVTLDSQEGLQVLR-HTSAHVLAQAVKRLYGE-V 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           S     +  DG  +D+   + +TS +L++IE  + +II +NL +    ++ E+A    A 
Sbjct: 94  SLGIGPVIEDGFYYDMKLEQSLTSGDLEAIEKEMKNIINENLEIKRIEVSYEEAEELFAK 153

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              G  +   +       ED  ++       LC G H+ STG I    +   S 
Sbjct: 154 K--GEPFKLEMLKDIPRGEDITLYQQGEFVDLCRGPHLPSTGMIKAFKLTRVSG 205


>gi|256960954|ref|ZP_05565125.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
 gi|256951450|gb|EEU68082.1| threonyl-tRNA synthetase [Enterococcus faecalis Merz96]
          Length = 645

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 13/205 (6%)

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           PF  ++G    D   +I + +  +    +     I +   IVE G L      ++T D++
Sbjct: 14  PF--DSGVTTFDVAKSISNSLAKKALAGKFNGVLIDLDRPIVEDGSLE-----IVTPDHE 66

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
           +   +   HS+ HL+ +AL  +  +     G  I             P+T+ +  +IE  
Sbjct: 67  DALGILR-HSSAHLMANALRRLFPNIKFGVGPAIDSGFYYDTDNGESPVTAEDFPAIEAE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           +  I+ +N P+V + ++R +A+   A      +   D      +   D G     LC G 
Sbjct: 126 MMKIVKENNPIVRKEISRAEALELFADDPYKVELITDLPEDEIITIYDQGDFVD-LCRGV 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I +  ++S   +     R
Sbjct: 185 HVPSTGRIQVFKLLS---VAGAYWR 206


>gi|241889888|ref|ZP_04777186.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
 gi|241863510|gb|EER67894.1| threonyl-tRNA synthetase [Gemella haemolysans ATCC 10379]
          Length = 647

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 7/205 (3%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI--DYQ 578
           + +   +  D    +     + ++  +K          I     +  +  L L +  D  
Sbjct: 6   FPDGNVREYDNKTPLEIAESISVSLKKKVISAKLDEDYIEVNKPITKDGHLKLIVADDED 65

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
                 + H+  H+L  AL  + G  V          G  +D      ++  + K+IE  
Sbjct: 66  KDSLYVLRHTCAHVLAQALRRLYGKDVHFGVGPAIDGGFYYDFDAEYKVSEEDFKAIEKE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           V  II++N  +  R +++E+A+          +  ND      +     G  +  LC G 
Sbjct: 126 VKKIISENYAIEGREVSKEEALEIFKEDPYKVELINDLPADEVITVYTQGDFTD-LCRGG 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           H+S+T +I    ++S   +     R
Sbjct: 185 HLSATSKIKEFKLLS---VAGAYWR 206


>gi|84624684|ref|YP_452056.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|73919845|sp|Q5GXY0|SYT_XANOR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123725509|sp|Q2P0Z5|SYT_XANOM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84368624|dbj|BAE69782.1| threonyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  +  +IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAAIEQRMQALIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSA----LCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y  R+   +S +    G++       +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIDDMSDDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|328553230|gb|AEB23722.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 9/170 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+A H+L  A+  +    V      +  +G  +D   +  IT  +L +IE  +N II+
Sbjct: 75  MRHTAAHVLAQAVKRLYPK-VCLGIGPVIENGFYYDFDMNDTITEKDLPAIEKEMNRIIS 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N  +    ++RE+A    A   L  +    +                LC G H++S G+
Sbjct: 134 ENPKITREEISREEAEQLFAHDPLKLELLADIPQTETVSIYRQSEFVDLCRGPHLASAGQ 193

Query: 705 IMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           I    +   S       S +  ++RI       ++  L    + LK    
Sbjct: 194 IKAFSLTHVSGAYWRGDSNQKMMQRIYGKA-FASKKELNRHFQLLKEAEK 242


>gi|331269136|ref|YP_004395628.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
 gi|329125686|gb|AEB75631.1| threonyl-tRNA synthetase [Clostridium botulinum BKT015925]
          Length = 637

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 22/198 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I  +G  +D       T   L+ IE  +N I+
Sbjct: 70  TLRHTASHILAQAVKRLYPDVKLAIGPSI-ENGFYYDFDAEFSFTPEILEKIEKEMNKIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHV 699
            +NL +    + R++AI           Y   +     E      +       LC G HV
Sbjct: 129 KENLELKKFTLPRDEAIKF--MKERNEDYKIELIEDLPEDAVISFYEEGEFVDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST E+  + ++S   +     R                ++ L+ +       + ++   
Sbjct: 187 PSTKEVKAIKLLS---VAGAYWR------------GNENNKMLQRIYGTAFTKKADLEQH 231

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  + E  ++      K 
Sbjct: 232 LHMLEEAKKRDHRKLGKE 249


>gi|289661762|ref|ZP_06483343.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 636

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++  IE  + ++IA
Sbjct: 73  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAVIEQRMQELIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y      D    ++            +C G HV
Sbjct: 132 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSEDITAMGLYYHQEYVDMCRGPHV 189

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 190 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 242


>gi|254304252|ref|ZP_04971610.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324444|gb|EDK89694.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 637

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 24/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          +    +L  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 31  KKSVGAKVDGKNVDMSYVLDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPDTK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 90  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKKIVKENIKLEKYVLPRDEAIDYF-R 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   +     + E    +       LC GTHV STG +    +    ++     
Sbjct: 148 DVDKNKYKVEIVEGIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFKL---RTVAGAYW 204

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R               +++ L+ +  +   S  + + +  ++ EE  K       ++L+L
Sbjct: 205 R------------GNSKNKMLQRIYGY-SFSNEDRLKKHLKLMEEAEKRDHRKLGKELEL 251


>gi|15790739|ref|NP_280563.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
 gi|10581281|gb|AAG20043.1| threonyl-tRNA synthetase [Halobacterium sp. NRC-1]
          Length = 650

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +G  + D    IG G+       +    G   H  + +   +  +  + +  D  +    
Sbjct: 28  SGATVEDVAHEIGPGL------GRDTVAGKIDHELVAKEEPISEDCEIEIVTDQSDEYLD 81

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + H+A H+L  A+           G   T +G  +D+ + + + + +L  I+     II
Sbjct: 82  VLRHTAAHVLAQAIRRHHPDAKLTIGPY-TDEGFYYDIANVE-LDADDLDEIQAEAASII 139

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYEDGGVHSSALCGGTHVSS 701
             +L V     +R DA    A      +  D        V +   G     LC G HV S
Sbjct: 140 DDDLDVERVEYDRADAREHYADNEFKREILDAEAAGDGPVSFYTQGDF-EDLCKGPHVDS 198

Query: 702 TGEIMLLYIVSESS 715
           TGEI    ++  S+
Sbjct: 199 TGEIGGFEVLETSA 212


>gi|290979954|ref|XP_002672698.1| predicted protein [Naegleria gruberi]
 gi|284086276|gb|EFC39954.1| predicted protein [Naegleria gruberi]
          Length = 308

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 33/245 (13%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFV-HHAIVE 561
              ++  D+T F+ + GGQ  D G  + +       ++  +  V+   + I V H    E
Sbjct: 59  DFYKINLDKTIFHPQGGGQPSDEGVLLINSLGGREMVKFCVKFVKLAGDLIQVDHFGWFE 118

Query: 562 RGILRT---------EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
              L             S+   ID + R   +  HSA H+L  A+  + G          
Sbjct: 119 GIELSESEIIQMNDGNASVECRIDMEKRNIYTKIHSAGHVLDLAI-AMCGYKWKPGRGYH 177

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDII-------AQNLPVVTRIMNREDAIASGAA 665
             D    +  H        +    + VN  I       ++N  VV   +     I     
Sbjct: 178 FVDSPYCEYFH-CNQIPESIPKFVEQVNQKITELLQDESENSTVVKSFIPYYSNIEENNL 236

Query: 666 AL---LGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRA 718
            +   L  K+   +       +D            C GTHV    EI     +S++  + 
Sbjct: 237 IVNNQLSEKFEHEIPTYLPPGQDVRFVKYGNVECACSGTHVDQFSEIGNFQ-MSKAKKQG 295

Query: 719 GIRRI 723
              RI
Sbjct: 296 QTIRI 300


>gi|227872012|ref|ZP_03990397.1| threonine--tRNA ligase [Oribacterium sinus F0268]
 gi|227842155|gb|EEJ52400.1| threonine--tRNA ligase [Oribacterium sinus F0268]
          Length = 627

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 68/204 (33%), Gaps = 25/204 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS  H+L  A+  + G  V         DG  +D    K ++  + K+IED + +II
Sbjct: 11  RYRHSLAHILAKAMVELYGPEVQYAIGPQIEDGCYYDFALPKSLSEEDFKTIEDKMREII 70

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +        ++RE A+A         +   D      +     G     LC G HV ++
Sbjct: 71  KRREDWTREELSREAALALFDKQKFKKELIQDLPADEVISIYRTGDDFVDLCRGPHVENS 130

Query: 703 GEIM--LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            E+M     I    SI     R     G   R  L            +L      +    
Sbjct: 131 QELMNVAFQI---KSISGAYWR-----GDEHRDQLQRV---------YLFAYPDKI---- 169

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVE 784
             + E  + LQ    +   +L  +
Sbjct: 170 -ALKEHLKWLQEAQERDHKKLGSQ 192


>gi|289668713|ref|ZP_06489788.1| threonyl-tRNA synthetase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 634

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++  IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPEVKMVIGPVI-AEGFYYDIYSERPFTPEDMAVIEQRMQELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I   A    G +Y      D    ++            +C G HV
Sbjct: 130 QDYDVIKKVTPRAEVIEVFAQR--GEEYKLRLIEDMSEDITAMGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
            +T  +    +     I     R +A   Q  R +     +K +  A  L++ + +
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEAD 240


>gi|262195001|ref|YP_003266210.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
 gi|262078348|gb|ACY14317.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
          Length = 624

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI-IMLVGISKEKKASVLIVVTED 845
                  V  +   + +  +  L  +  A+Q +++ G   +L+G   + +A ++  ++ +
Sbjct: 502 RAQLAGGVPVVIGALEDAPADALDEIAAAVQAQLEGGRGAVLLGSVHQGRALLVCALSPE 561

Query: 846 LLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           L+    +A  L      ++  G GGGRP+ A+ GG      +QA+A     L
Sbjct: 562 LVGPELSAGALLAQILPLVA-GKGGGRPNYARGGGSQPEALEQALAAGRERL 612


>gi|225574947|ref|ZP_03783557.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037794|gb|EEG48040.1| hypothetical protein RUMHYD_03026 [Blautia hydrogenotrophica DSM
           10507]
          Length = 667

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 24/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D    +P +  +L  IE  +  I+
Sbjct: 85  ALRHTASHVLAEAVKRLYPHAKVAIGPSIDT-GFYYDFEC-EPFSQEDLDKIEQEMKKIV 142

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    M RE+AIA          Y   +     E  +   +S      LC G H+
Sbjct: 143 KEGAKIERYTMPREEAIAYF--KEKEEPYKVELIEDLPEDAEISFYSQGGFTDLCAGPHL 200

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    ++S S                A      + + L  +       +  +   
Sbjct: 201 MSTKGVKAFKLLSSSG---------------AYWRGDEKRQMLTRVYGTAFGKKDELKAY 245

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +E++ EE +K       R+++L
Sbjct: 246 LEQL-EEAKKRDHNKLGREMEL 266


>gi|169236481|ref|YP_001689681.1| threonyl-tRNA synthetase [Halobacterium salinarum R1]
 gi|73921305|sp|Q9HP27|SYT_HALSA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229470722|sp|B0R6G6|SYT_HALS3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167727547|emb|CAP14335.1| threonine--tRNA ligase [Halobacterium salinarum R1]
          Length = 640

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 11/194 (5%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +G  + D    IG G+       +    G   H  + +   +  +  + +  D  +    
Sbjct: 18  SGATVEDVAHEIGPGL------GRDTVAGKIDHELVAKEEPISEDCEIEIVTDQSDEYLD 71

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + H+A H+L  A+           G   T +G  +D+ + + + + +L  I+     II
Sbjct: 72  VLRHTAAHVLAQAIRRHHPDAKLTIGPY-TDEGFYYDIANVE-LDADDLDEIQAEAASII 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYEDGGVHSSALCGGTHVSS 701
             +L V     +R DA    A      +  D        V +   G     LC G HV S
Sbjct: 130 DDDLDVERVEYDRADAREHYADNEFKREILDAEAAGDGPVSFYTQGDF-EDLCKGPHVDS 188

Query: 702 TGEIMLLYIVSESS 715
           TGEI    ++  S+
Sbjct: 189 TGEIGGFEVLETSA 202


>gi|197103889|ref|YP_002129266.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
 gi|238690165|sp|B4RE95|SYT_PHEZH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196477309|gb|ACG76837.1| threonyl-tRNA synthetase [Phenylobacterium zucineum HLK1]
          Length = 658

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 21/190 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H  +H+L  A+  +        G  I  DG  +D    +P +  +L  IE  + +I+
Sbjct: 70  TIRHDVSHILAEAVQELFPGTQVTIGPAI-EDGFYYDFAREEPFSLDDLAKIEQRMKEIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++ P+     +R++AI       +G +Y  ++       E   V+       LC G H+
Sbjct: 129 DRDEPIRREEWDRDEAIRHF--REIGEEYKAQIIEAIPAGEKITVYRQGQWKDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST           + +     R               ++ +L+ +      S+ ++   
Sbjct: 187 PSTRHAG--KAFKLTKLAGAYWR------------GDHRNAQLQRIYGTAWASEADLEAY 232

Query: 760 VEEIWEEYRK 769
           ++ + E  ++
Sbjct: 233 IQRLEEAEKR 242


>gi|150389418|ref|YP_001319467.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149949280|gb|ABR47808.1| threonyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 636

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H++ HLL  A+  +  +     G  I  +G  +D          +L+ IE  +  I+ 
Sbjct: 73  LRHTSAHLLAQAVLRLFPNTKLAIGPAID-NGFYYDFDTEHRFIPEDLEKIEAEMQKIVK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L V    ++R+ AI        G  Y   +     E      +       LC G HV 
Sbjct: 132 EDLHVERFELSRDKAIE--LVKEQGEDYKLELIQDLPEDAVISFYKQGEFTDLCAGPHVL 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG+I    ++S   I     R               +++ L+ +       + ++   +
Sbjct: 190 STGKIKAFKLLS---IAGAYWR------------GDEKNKMLQRIYGTSFTKKADLEAHL 234

Query: 761 EEIWEEYRKLQLIHAKR 777
           E + E  ++      K 
Sbjct: 235 ERLEEAKKRDHRKIGKE 251


>gi|90407011|ref|ZP_01215201.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
 gi|90311882|gb|EAS39977.1| threonyl-tRNA synthetase [Psychromonas sp. CNPT3]
          Length = 635

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  I  +G  +D+     I   EL  IE  +N ++ 
Sbjct: 71  LRHSCAHLLGHAIKQLYPNAKMAIGPTID-NGFYYDIDVDVAINDEELAKIEKRMNLLVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
            N  VV + ++  +AIA          Y   +     + +  G++       +C G HV 
Sbjct: 130 TNYKVVKKNVSVAEAIALFKER--DEPYKLEILEGIDKDDRPGLYHHEEYIDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
                    ++    +     R  +      R +     +K K L ++LK
Sbjct: 188 MMKFSQYFKLMK---VAGAYWRGNSDNKMLQRIYGTAWADK-KQLKAYLK 233


>gi|294619108|ref|ZP_06698603.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
 gi|291594769|gb|EFF26151.1| threonyl-tRNA synthetase [Enterococcus faecium E1679]
          Length = 646

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 4/176 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      +     +  + S+ +           + HSA HL+  A+  +  +   
Sbjct: 33  KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGLVRHSAAHLMAQAMRRLYPNIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              +T+ +L +IE  +  I+ +NLP+  R++++++A+   A+ 
Sbjct: 93  GVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +    +    +     G     LC G HV STG I +  ++S   +     R
Sbjct: 153 PYKVELISELPEEVITAYQQGEFID-LCRGPHVPSTGRIQVFKLLS---VAGAYWR 204


>gi|88859310|ref|ZP_01133950.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
 gi|88818327|gb|EAR28142.1| threonyl-tRNA synthetase [Pseudoalteromonas tunicata D2]
          Length = 636

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+     +T  +L+++E  +  +  
Sbjct: 71  IRHSCAHLLGHAIKQLYPDVKMAIGPTID-NGFYYDIDMEHSLTQDDLEALEKQMLKLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  VV +++  ++A    AA   G +Y   +   ++  +D  G++       +C G HV
Sbjct: 130 THYDVVKKVVTWQEARDVFAAR--GEQYKIEILDENISRDDTPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +        I+    +     R ++      R +     +K K LA++LK
Sbjct: 188 PNMKFCEHFKIMK---VAGAYWRGDSENKMLQRVYGTAWADK-KQLAAYLK 234


>gi|107102275|ref|ZP_01366193.1| hypothetical protein PaerPA_01003332 [Pseudomonas aeruginosa PACS2]
          Length = 621

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+   +P T  ++ +I+  + ++I 
Sbjct: 52  IRHSCAHLVGHAVKQLYPTAKMVIGPVI-EEGFYYDIFFERPFTPEDMAAIQQRMRELID 110

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V+ ++  R + I    +   G  Y  R+     + +  G++       +C G HV 
Sbjct: 111 KDYDVIKKMTPRAEVIELFKSR--GEDYKLRLIDDMPDEKAMGLYFHEEYVDMCRGPHVP 168

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +   S                A      ++E+L+ +       +  +   +
Sbjct: 169 NTRFLKAFQLTKISG---------------AYWRGDSKNEQLQRIYGTAWADKKQLAAYI 213

Query: 761 EEIWEEYRKLQLIHAKR 777
           + I E  ++      K+
Sbjct: 214 QRIEEAEKRDHRRIGKQ 230


>gi|315126513|ref|YP_004068516.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
 gi|315015027|gb|ADT68365.1| threonyl-tRNA synthetase [Pseudoalteromonas sp. SM9913]
          Length = 636

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+     ++  +L +IE  +  +  
Sbjct: 71  IRHSCAHLIGHAVKQLFPDAKMAIGPTID-NGFYYDIDMEHSLSQDDLDAIEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  VV + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 TNYDVVKKTVSWQEARDTFAAR--GETYKIEILDENIAQDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +        I+    +     R ++      R +     +K K L ++LK
Sbjct: 188 PNMKFCQNFKIMK---VAGAYWRGDSENKMLQRIYGTAWGDK-KQLKAYLK 234


>gi|288940715|ref|YP_003442955.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
 gi|288896087|gb|ADC61923.1| threonyl-tRNA synthetase [Allochromatium vinosum DSM 180]
          Length = 639

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D +   +L   H A H++  A+  +        G  I  +G  +D    +P T A+L+ I
Sbjct: 64  DEETALELLR-HDAAHVMAQAVQELYPGAQVTIGPAI-ENGFYYDFARDEPFTPADLERI 121

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-------YEDGGV 688
           E+ +++I+ ++LP+V  IM+RE+A      A LG  Y   +    +        Y  G  
Sbjct: 122 EERMHEIVKRDLPIVREIMDREEAKR--VFAELGEHYKVEIIDDIIPAGEAVSIYRQGDW 179

Query: 689 HSSALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                C G H+ STG++     ++    +     R ++      R +     +K K L +
Sbjct: 180 FDV--CRGPHLPSTGKLGNGFKLMK---LAGAYWRGDSRNAMLQRIYGTAWRDK-KELNA 233

Query: 748 FL 749
           +L
Sbjct: 234 YL 235


>gi|320451414|ref|YP_004203510.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
 gi|320151583|gb|ADW22961.1| threonyl-tRNA synthetase [Thermus scotoductus SA-01]
          Length = 659

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 83/251 (33%), Gaps = 42/251 (16%)

Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E G    D   AIG G  +  +         +           L     + +  +     
Sbjct: 14  EEGATAWDVARAIGPGLAKAAV-------GALVNGEVYDLLKPLPPGAQVRILTEKDPEY 66

Query: 582 QLSINHSATHLLHHALST------ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           QL   H+  H+L  A+             V      +   G  +D+   +PI+  +L +I
Sbjct: 67  QLLFRHTLAHVLAQAVKEFFAEKGYDPESVKLGVGPVIEKGFYYDIDAPEPISDEDLPAI 126

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E+ +  IIA++LP+   ++ RE A++          Y   + +   E E+   +      
Sbjct: 127 EEKMRAIIAKDLPLRRYVLPREVALSRYQGK---DPYKTELILDLPEDEEISFYQQGDEA 183

Query: 692 ----ALCGGTHVSSTGEIML-LYIVSESSIRAGIRR-------------IEAITGQRARS 733
                LC G HV STG I     +     +     R             +   T +  + 
Sbjct: 184 YGFTDLCRGPHVPSTGRIPPHFKLT---HVAGAYWRGDEKRPMLQRVYGVAFRTAEELKE 240

Query: 734 HLMGQDEKLKS 744
           +L   +E  K 
Sbjct: 241 YLWQLEEAKKR 251


>gi|125973743|ref|YP_001037653.1| threonyl-tRNA synthetase [Clostridium thermocellum ATCC 27405]
 gi|256005747|ref|ZP_05430701.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281417900|ref|ZP_06248920.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|166223337|sp|A3DET1|SYT_CLOTH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125713968|gb|ABN52460.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|255990281|gb|EEU00409.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 2360]
 gi|281409302|gb|EFB39560.1| threonyl-tRNA synthetase [Clostridium thermocellum JW20]
 gi|316940063|gb|ADU74097.1| threonyl-tRNA synthetase [Clostridium thermocellum DSM 1313]
          Length = 635

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 23/201 (11%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           LT D +  R  +  H+ +H+L  A+  +        G  I  +G  +D    KP +  +L
Sbjct: 60  LTFDDEGGRD-AYRHTTSHILAQAVKRLYPDAKLAIGPAI-ENGFYYDFDVEKPFSVEDL 117

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
           + IE+ +  II ++  +    + RE+AI           Y   +     E E    +   
Sbjct: 118 EKIEEEMKKIIKEDYKLERFTLPREEAIKF--MEERNEPYKVELIRDLPEGETISFYKQG 175

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               LC G H+ STG++    ++S   +     R               +++ L+ +   
Sbjct: 176 DFVDLCAGPHIESTGKVKAFKLMS---VAGAYWR------------GNEKNKMLQRIYGT 220

Query: 749 LKVSQGNVVGRVEEIWEEYRK 769
               + ++   +  I E  ++
Sbjct: 221 SFTKKSDLDAYITRIEEAKKR 241


>gi|302339715|ref|YP_003804921.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301636900|gb|ADK82327.1| threonyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 585

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +   I HS  H++  A+  +        G  I  +G  +D    KP+ + +L+ I   + 
Sbjct: 11  KLHRIRHSMAHVMAEAVVDLFPGTKVAIGPAI-ENGFYYDFDFPKPLANDDLEKISAKMK 69

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           DII    P   ++++RE+A    +    G +Y   +     E E+  ++S      LC G
Sbjct: 70  DIIKGKHPFQRKVISREEAEKLFSGK--GEQYKVELLKAIPEGEEVSLYSQDSFTDLCRG 127

Query: 697 THVSSTGEI--MLLYIVSESSIRAGIRR 722
            HV +T ++      ++S   I     R
Sbjct: 128 PHVENTADLNAEAFKLLS---IAGAYWR 152


>gi|282898730|ref|ZP_06306717.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196257|gb|EFA71167.1| Threonyl-tRNA synthetase, class IIa [Cylindrospermopsis raciborskii
           CS-505]
          Length = 610

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D  + +P +  +LK+I+  +  II 
Sbjct: 31  IRHTASHIMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDNPEPFSDKDLKAIQKEMVKIIN 89

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVS 700
           + LPV+   ++RE+A        +   Y   +        +     G     LC G H+ 
Sbjct: 90  RKLPVIREEVSREEAKKR--IEKIQEPYKLEILADIKQEPITIYHLGDEWWDLCAGPHLE 147

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +T +I     +   S+     R
Sbjct: 148 NTKDINP-KAIELESVAGAYWR 168


>gi|164687668|ref|ZP_02211696.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
 gi|164603442|gb|EDQ96907.1| hypothetical protein CLOBAR_01310 [Clostridium bartlettii DSM
           16795]
          Length = 639

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 77/204 (37%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E    + D   +I +G+   +       E + + + + E   L          D +  + 
Sbjct: 15  EGKVSVLDIAKSISEGLARAVVAASVNGETVGLDYEVCEDCELNL-----YKFDDEEGKD 69

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   H++ H+L  AL  +        G  I  +G  +D+     IT  EL  IE  +  I
Sbjct: 70  V-FRHTSAHMLAQALKRLYPGVKLAIGPSI-ENGFYYDIDLDHRITEEELAKIEAEMKKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
             ++L +    +++EDA+    A   G  Y   +     E E    +       LC G H
Sbjct: 128 AKEDLKIERYELSKEDALK--WAKENGEDYKVELIEELPEGEVISFYKQGDFADLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + ST ++  + ++S   +     R
Sbjct: 186 LPSTKKVKAVKLLS---VAGAYWR 206


>gi|315646839|ref|ZP_07899954.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
 gi|315277769|gb|EFU41093.1| threonyl-tRNA synthetase [Paenibacillus vortex V453]
          Length = 635

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++T+D ++   +   HS  HL+  A+  + G   V      +  DG  +D+     I++ 
Sbjct: 60  IVTLDSEDGLNI-YRHSTAHLMAQAVKRLYGSKPVYLGVGPVVEDGFYYDMDLEHSISTD 118

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGV 688
           +L +IE  +  I+ ++LP++ R ++RE+A    +      +         +   YE G  
Sbjct: 119 DLIAIEREMQQIVQEDLPIIRREISREEAEQLFSDDPYKRELILGLPEEEIISVYEQGEF 178

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               LC G H+ STG I    ++S   +     R
Sbjct: 179 ID--LCRGPHLPSTGRIKAFKLMS---VAGAYWR 207


>gi|296536619|ref|ZP_06898695.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
 gi|296263053|gb|EFH09602.1| threonine--tRNA ligase [Roseomonas cervicalis ATCC 49957]
          Length = 660

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   ++P T  +   IE  + +IIA
Sbjct: 71  IRHDAAHVLAEAVQELFPGTQVTIGPAI-ENGFYYDFARNEPFTPEDFPKIEAKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N      +  RE AIA   A   G +Y   +           ++       LC G H+ 
Sbjct: 130 RNAAFQREVWPREQAIAFFEAK--GERYKAELIRDLPVDVPISIYRQGEWLDLCRGPHMR 187

Query: 701 STGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           STG+I     ++    +     R +      +R +     ++ K L ++L
Sbjct: 188 STGDIGSAFKLMK---VAGAYWRGDHRNAMLSRIYATAWRDQ-KELDAYL 233


>gi|291295577|ref|YP_003506975.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
 gi|290470536|gb|ADD27955.1| threonyl-tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 652

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 34/206 (16%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL------GSHVSQNGSCITPDGL 617
            L     L +  +          H+  H++  A+  +          V      +  +G 
Sbjct: 49  PLPPHAELRILTEKDPEYAQLFRHTLAHVMAQAVRELYTERGYRPEEVKLAIGPVIENGF 108

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +D+   +PI   +L  IE+ +  I+A NLP+   ++ RE+A+   A       Y   + 
Sbjct: 109 YYDMDAPEPIREEDLPIIEEKMRRIVAANLPLKRFVLPREEALKRYAGI---DPYKTELI 165

Query: 678 VVSVEYEDGGVHSS--------ALCGGTHVSSTGEIML-LYIVSESSIRAGIRR------ 722
               E E+   ++          LC G HV STG I     +     I     R      
Sbjct: 166 QDLPESEELSFYAQGDDTYGFTDLCRGPHVPSTGRIPPHFKLT---GIAGAYWRGDSSRP 222

Query: 723 -------IEAITGQRARSHLMGQDEK 741
                  +   T +    +L  Q+E 
Sbjct: 223 MLQRIYGVAFRTKEELEHYLWQQEEA 248


>gi|147678291|ref|YP_001212506.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
 gi|146274388|dbj|BAF60137.1| threonyl-tRNA synthetase [Pelotomaculum thermopropionicum SI]
          Length = 640

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 10/163 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + S+          +    HS  H++  A+  +        G  I  DG  +D   
Sbjct: 55  PLEKDASVQFLTFEHEEGRQVYRHSTAHVMAQAVQRLFPGTRLAIGPAI-ADGFYYDFDP 113

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L  IE  + +II  +LP     ++R +A+A    A  G  Y   +       
Sbjct: 114 QEPFTPEDLAKIEKEMENIIKADLPFERAELSRAEALAMFREA--GQDYKVELIEDLPPE 171

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               V+       LC G HV STG +  + ++S   +     R
Sbjct: 172 VPISVYRQGEFVDLCTGPHVPSTGRLKAVKLMS---VAGAYWR 211


>gi|15824732|gb|AAL09461.1|AF332359_1 alanyl-tRNA synthase [Fibrobacter succinogenes subsp.
          succinogenes S85]
 gi|15822558|gb|AAK13021.1| alanyl-tRNA synthase [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 57

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 36/57 (63%)

Query: 38 FTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94
          FTN+GM  FK IF G    V       QKC+R  GKHNDLD VGR N HHTFFEM G
Sbjct: 1  FTNAGMNQFKAIFLGDNPKVGSRACNSQKCLRVSGKHNDLDVVGRDNYHHTFFEMKG 57


>gi|332184284|gb|AEE26538.1| Threonyl-tRNA synthetase [Francisella cf. novicida 3523]
          Length = 634

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKEAIGEADLAAIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSTPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQVKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +   +       S    + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSNNEMLTRIYGTC-WATKEDLDQYLNMLEEAEK 239


>gi|46581568|ref|YP_012376.1| alanyl-tRNA synthetase family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450991|gb|AAS97636.1| alanyl-tRNA synthetase family protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235211|gb|ADP88065.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio vulgaris RCH1]
          Length = 218

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 28/228 (12%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           + + E V   V      +  D+T  +A +GGQ  D G   G  I   +       + + +
Sbjct: 13  LTETEAVVTGVEND--VITLDRTVAFAFSGGQESDRGTIAGHAILKAVKG--SPCDPLEL 68

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
           ++ +     L     + + ID + RR+L   H A  L+   ++     H  + G+ I+PD
Sbjct: 69  YYTLPAGHGLTPGSRVTVCIDGEARRRLVRLHFAAELVLELVNR-HYDHPEKTGAHISPD 127

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
             R D      I+ A    + + ++ ++A +LP+ +                     +  
Sbjct: 128 KARLDFAWQGNISVA-FPMLHERLSALVAADLPIESSF----------------EDESTE 170

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           VR  S+E       +   CGGTH +STG +  +  +   +  +G  RI
Sbjct: 171 VRYWSIEG-----FARVRCGGTHPASTGAVGRIR-LRRENPGSGRERI 212


>gi|329768866|ref|ZP_08260294.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
 gi|328837229|gb|EGF86866.1| threonyl-tRNA synthetase [Gemella sanguinis M325]
          Length = 647

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 7/205 (3%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI--DYQ 578
           + +   +  D    +     + ++  +K          I     +  +  L L +  D  
Sbjct: 6   FPDGNVREYDNKTPLEIAESISVSLKKKVISAKLDDDYIEVNKPITRDGHLKLIVADDED 65

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
                 + HS+ HLL  AL  + G  V          G  +D      +T  + K+IE  
Sbjct: 66  QDSLYVLRHSSAHLLAQALRRLYGKDVHFGVGPAIDGGFYYDFDSEYKVTEEDFKNIEKE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           +  I+++N+ +  R ++R +A+   A      +  ND      +     G  +  LC G 
Sbjct: 126 MKKIVSENIAIEGREVSRSEALEIFADDPYKVELINDLPEDEVITVYTQGDFTD-LCRGG 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV+ST +I    ++S   +     R
Sbjct: 185 HVASTSKIKEFKLLS---VAGAYWR 206


>gi|310658431|ref|YP_003936152.1| threonyl-tRNA synthetase [Clostridium sticklandii DSM 519]
 gi|308825209|emb|CBH21247.1| threonyl-tRNA synthetase [Clostridium sticklandii]
          Length = 637

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G +  D   +I +G+   I   +   E          +  +  +  L          +
Sbjct: 15  ESGIRAIDVANSISEGLARAIVGAKINGE------VKDLKTPINDDAKLEFVKFEDKDGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H++TH++  A+  +        G  I  +G  +D+     ++  +L+ IE  +  I
Sbjct: 69  EVFWHTSTHVMAQAIKRLYPEAKLAIGPAI-ENGFYYDIDLEHRLSPEDLEKIEAEMKKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +   V    + +++AI       LG  Y   +     E      +       LC G H
Sbjct: 128 VKEEFEVERYELPKDEAIDF--MKKLGEDYKVELIEGLEEGSTISFYKQGEFTDLCAGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + +  ++    ++S   +     R
Sbjct: 186 LPNVKKVKAFKLLS---VAGAYWR 206


>gi|261325154|ref|ZP_05964351.1| threonyl/alanyl tRNA synthetase SAD [Brucella neotomae 5K33]
 gi|261301134|gb|EEY04631.1| threonyl/alanyl tRNA synthetase SAD [Brucella neotomae 5K33]
          Length = 144

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+A HLL  A            G+ +  D  R D        + E  S+ + + +++
Sbjct: 1   MRMHTACHLLSVACP------FPITGAAVGEDESRVDFDLPDQSYTKE--SVTEKLMELV 52

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
             N PV    ++ E+ +A+                R+  V   + G   S  CGGTHVS 
Sbjct: 53  QANAPVSIHWISDEEFLANPDIVKSKNVRPPVGLGRIRLVAIGENGSVDSQPCGGTHVSE 112

Query: 702 TGEIMLLYIVSESSIRAGIRRI 723
           T E+  ++I          RR 
Sbjct: 113 TQEVGEIHIGKIEKKGKENRRF 134


>gi|94986656|ref|YP_594589.1| threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
 gi|122988800|sp|Q1MRV8|SYT_LAWIP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94730905|emb|CAJ54268.1| Threonyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00]
          Length = 642

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 20/184 (10%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V     G  +   +       T+  + +TID ++  +  + HSA H+L  A+  +  +  
Sbjct: 33  VGYNINGSIID--LFTPLPTITKEVIPITIDSEDGLE-MLRHSAAHILAAAVKNLFPTVK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T  +  +IE  +  II +++P     +++ +A+     
Sbjct: 90  ISIGPSI-ENGFYYDFDAERPFTPEDFPAIEAEMQRIINESIPFERIEISKAEALE---- 144

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTHVSSTGEIMLLYIVSESSIRA 718
               +  ++  +V  +   + G  +       + LC G HV +T  I    ++S   +  
Sbjct: 145 --FFSSLHENYKVEIINSLEDGNITLYRIGNFTDLCKGPHVPNTNFIKAFKLLS---VAG 199

Query: 719 GIRR 722
              R
Sbjct: 200 AYWR 203


>gi|328912917|gb|AEB64513.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens LL3]
          Length = 653

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 103/261 (39%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      I  R  ++ + ++ +  +        
Sbjct: 30  GSTTEDIAASISPGLK------KKSLAGKLNGQEIDLRTPIQEDGAVEIITEGTEEGLNI 83

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I    V      +  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 84  MRHSTAHLLAQAIKRIY-KDVKFGVGPVIENGFYYDVEMEQALTPDDLPKIEKEMKRIVG 142

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NLP++ + ++R++A +    A +G      +     E E   ++       LC G HV 
Sbjct: 143 ENLPIIRKEVSRDEAKSMF--AEIGDNLKLELLDAIPEDETVSIYEQGEFFDLCRGVHVP 200

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG+I    ++S             + G  A      +++ L+ +       + ++   +
Sbjct: 201 STGKIKEFKLLS-------------LAG--AYWRGDSKNQMLQRIYGTAFFKKDDLKEHL 245

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
             + EE ++       ++L+L
Sbjct: 246 -RMLEEAKERDHRKLGKELKL 265


>gi|308174589|ref|YP_003921294.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307607453|emb|CBI43824.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|328554512|gb|AEB25004.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens TA208]
          Length = 643

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 103/261 (39%), Gaps = 29/261 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      I  R  ++ + ++ +  +        
Sbjct: 20  GSTTEDIAASISPGLK------KKSLAGKLNGQEIDLRTPIQEDGAVEIITEGTEEGLNI 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL  A+  I    V      +  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLLAQAIKRIY-KDVKFGVGPVIENGFYYDVEMEQALTPDDLPKIEKEMKRIVG 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NLP++ + ++R++A +    A +G      +     E E   ++       LC G HV 
Sbjct: 133 ENLPIIRKEVSRDEAKSMF--AEIGDNLKLELLDAIPEDETVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG+I    ++S             + G  A      +++ L+ +       + ++   +
Sbjct: 191 STGKIKEFKLLS-------------LAG--AYWRGDSKNQMLQRIYGTAFFKKDDLKEHL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
             + EE ++       ++L+L
Sbjct: 236 -RMLEEAKERDHRKLGKELKL 255


>gi|288553677|ref|YP_003425612.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
 gi|288544837|gb|ADC48720.1| threonyl-tRNA synthetase [Bacillus pseudofirmus OF4]
          Length = 643

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 15/196 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQL 583
           G    D   +I  G++      +K   G   H  +  R  L  +  + ++T D +   ++
Sbjct: 20  GTTTEDIAASISPGLK------KKALAGKLNHTLVDLRTPLTEDGEIAIVTQDSEEALEI 73

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS  HL+  A+  +    V      +   G  +D+   + IT+ +L  IE  +  II
Sbjct: 74  MR-HSTAHLMAQAVKRLF-KGVKLGVGPVIEGGFYYDIDSEESITAEDLPKIEKEMKKII 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           A+NL V+   ++R +AI       +G +Y   +     E E   ++       LC G HV
Sbjct: 132 AENLEVIRVELSRGEAIVRY--KEVGDEYKLELIEAIPEGESLTIYEQGEFFDLCRGVHV 189

Query: 700 SSTGEIMLLYIVSESS 715
            ST +I    ++S + 
Sbjct: 190 PSTNKIKEFKLLSLAG 205


>gi|226950568|ref|YP_002805659.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|254783516|sp|C1FKN0|SYT_CLOBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226841746|gb|ACO84412.1| threonine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 635

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 73/202 (36%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+ +H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  TLRHTGSHMLAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAIK--LMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A      +++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGDEKNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMIEEAKKRDHRKLGKELDL 252


>gi|298530062|ref|ZP_07017464.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509436|gb|EFI33340.1| threonyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 646

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 25/190 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+ TI  S     G  I   G  +D  + +P T  +L+ IE  +   IA
Sbjct: 72  LRHSAAHIMAEAVKTIFPSARVTIGPDI-EHGFYYDFDYERPFTPEDLEKIEAEMARSIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHV 699
           Q+ P    +M+RE+A        +   Y   +     E     Y  G      LC G HV
Sbjct: 131 QDQPFERVVMSREEAKKVFLD--MNETYKLEILDELEEDEVSLYRHGDFID--LCRGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG +    + S   +     R               +   L+ +      S   +   
Sbjct: 187 PSTGYVKSFKLTS---VAGAYWR------------GDEKRPMLQRIYGTAFASDKELKKH 231

Query: 760 VEEIWEEYRK 769
           +  + E  ++
Sbjct: 232 LTRLEEARKR 241


>gi|46580942|ref|YP_011750.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601757|ref|YP_966157.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris DP4]
 gi|81566250|sp|Q728R5|SYT_DESVH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987320|sp|A1VBB4|SYT_DESVV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46450362|gb|AAS97010.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561986|gb|ABM27730.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Desulfovibrio
           vulgaris DP4]
 gi|311234632|gb|ADP87486.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris RCH1]
          Length = 644

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 15/203 (7%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           +G   GD       G + +     +   G+    A V  G    E       D      L
Sbjct: 14  SGASCGDALKGALSGKKFKNVLACRLDGGLVDITATVPDGTTTIEPVYA---DSPEGLDL 70

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              HS  H++  A+  +  +     G  I  +G  +D    +P +  + ++IE  +  I+
Sbjct: 71  IR-HSTAHIMACAVKRLFPAAKVTIGPSID-NGFYYDFDAERPFSPEDFEAIEREMQKIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
               P     M R++A+A      +G  Y     +  +  +   ++       LC G H+
Sbjct: 129 DAATPFERSEMPRDEAVALFEG--MGETYKVE-IIRDLPNDTVSLYRCGEFVDLCRGPHI 185

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
              G      ++S   +     R
Sbjct: 186 PHAGFAKAFKLMS---VAGAYWR 205


>gi|153009484|ref|YP_001370699.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|151561372|gb|ABS14870.1| threonyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 661

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 14/209 (6%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI--DYQ 578
           + +   +  D     G G+   I+    K    +     V         S  + I     
Sbjct: 12  FPDGSVREYDASM-TGAGLAESISKSLAKKAVAYAVDGTVRDLSDPLGASGKIEILTRED 70

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
            R    I H   H+L  A+  +        G  I  +G  +D   ++P T  +L  IE  
Sbjct: 71  PRALELIRHDTAHVLAEAVQELFPGTQVTIGPVI-ENGFYYDFARNEPFTPDDLPVIEKK 129

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALC 694
           + +II +N P    + +RE A    A    G  Y   +       +D  ++       LC
Sbjct: 130 MREIIQRNKPFTKEVWSREKAKQVFADK--GENYKVELVEAIPAGQDLKIYYQGDWFDLC 187

Query: 695 GGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
            G H++STG+I     ++    +     R
Sbjct: 188 RGPHMASTGQIGNSFKLMK---VAGAYWR 213


>gi|317495533|ref|ZP_07953901.1| threonyl-tRNA synthetase [Gemella moribillum M424]
 gi|316914347|gb|EFV35825.1| threonyl-tRNA synthetase [Gemella moribillum M424]
          Length = 647

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 7/205 (3%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI--DYQ 578
           + +   +  D   A+     + I+  +K          I     +  +  L L +  D  
Sbjct: 6   FPDGNVREYDNKTALEIAESISISLKKKVISAKLDEDYIELNKPITKDGHLKLIVADDED 65

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
                 + HS+ HLL  AL  + G  V          G  +D      I+  + K+IE  
Sbjct: 66  QDSLYVLRHSSAHLLAQALRRLYGKDVHFGVGPAIDGGFYYDFDSEYKISEEDFKNIEKE 125

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGT 697
           +  II++N+ +  R ++R +A+   AA     +  ND      +     G     LC G 
Sbjct: 126 MKKIISENVAIEGREVSRTEALEIFAADPYKVELINDLPEDEVITVYTQGDF-VDLCRGG 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV+ST +I    ++S   +     R
Sbjct: 185 HVASTSKIKEFKLLS---VAGAYWR 206


>gi|240850680|ref|YP_002972080.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
 gi|240267803|gb|ACS51391.1| threonyl-tRNA synthetase [Bartonella grahamii as4aup]
          Length = 658

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 11/167 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +     +R    I H   H+L  A+  +        G  I  +G  +D   
Sbjct: 53  PLEQSGQVEIITREDSRALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFAR 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L  IE  + +II +N P    I +RE A      +     Y   +     E 
Sbjct: 112 QQPFTLDDLTIIEKKMREIIQRNKPFRKEIWSREKARKKF--SEKKEFYKVELIDSIPED 169

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +D  ++       LC G H+ STG+I     ++    +     R +A
Sbjct: 170 QDLKIYYQGDWFDLCRGPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|322833539|ref|YP_004213566.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
 gi|321168740|gb|ADW74439.1| threonyl-tRNA synthetase [Rahnella sp. Y9602]
          Length = 642

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 78/198 (39%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDLDRTLTQEDIELLEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++ ++A  + A+   G +Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWQEARDTFASR--GEEYKVAILDENISHDDHPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +   S                A       ++ L+ +       +  +   
Sbjct: 188 PNMRFCHHFKLQKTSG---------------AYWRGNSDNKMLQRIYGTAWADKKQLNAY 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           ++ + E  ++      K+
Sbjct: 233 IQRLEEAGKRDHRKIGKQ 250


>gi|308186646|ref|YP_003930777.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
 gi|308057156|gb|ADO09328.1| Threonyl-tRNA synthetase [Pantoea vagans C9-1]
          Length = 642

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 92/239 (38%), Gaps = 17/239 (7%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +   ++ D   ++ D        + K      V+  +V+     T+ + V  I  ++  
Sbjct: 7   PDGSQRVFDRPVSVMDIALDIGPGLAKACIAGRVNGELVDAADPITDDAAVAIITAKDEA 66

Query: 582 QLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            L I  HS  HLL HA+  +        G  I  +G  +DV   + +T  ++  +E  ++
Sbjct: 67  GLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIDLLEKRMH 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCG 695
            +   N  VV + ++ ++A    AA   G  Y   +   ++ ++D  G++       +C 
Sbjct: 126 QLAETNYDVVKKKVSWQEARDVFAAR--GEIYKTTILDENISHDDKPGLYHHEEYVDMCR 183

Query: 696 GTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G HV +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 184 GPHVPNMRFCHHFKLQKISGAYWRGDSSNKMLQRIYG-TAWADKKQLAAYLQRLEEAAK 241


>gi|320353536|ref|YP_004194875.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122038|gb|ADW17584.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 641

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 22/205 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  + G  V         DG  +D    KP +S E + IE  + ++  
Sbjct: 74  LRHSTAHIMALAVKELFGDQVKVAIGPAIEDGFYYDFDREKPFSSEEFEQIEAKMAELAN 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
             LP V + M +E+AI        G  Y   + +  +E E   +++      LC G HV 
Sbjct: 134 ARLPFVRQEMPKEEAIRFFEQH--GEIYKLEL-LREMEAETVSLYTHGGFVDLCRGPHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            +  I +  ++    +     R               + + L  +       +  +   +
Sbjct: 191 DSSWIKVFKLL---RVAGSYWR------------GDEKRQMLTRIYGTAFADKKELQQYL 235

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED 785
             + E  ++      K+     ++D
Sbjct: 236 ARLEEARKRDHRKLGKQLGLFTIQD 260


>gi|238024250|ref|YP_002908482.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia glumae BGR1]
 gi|237878915|gb|ACR31247.1| Threonyl/alanyl tRNA synthetase SAD [Burkholderia glumae BGR1]
          Length = 209

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 77/226 (34%), Gaps = 37/226 (16%)

Query: 494 AIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552
           A+    E++     G     V   +TPF+ + GGQ  DTG         ++  V  + E 
Sbjct: 11  ALALDTEVLACEPDGDGHFRVRLAETPFHPQGGGQPSDTGRI----GAARVLHVAAEGEA 66

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +           +    + V  +D   R   +  HSA HL+ +A +      V       
Sbjct: 67  VVHR----TDRAVAPGAAAV-EVDAAPRALHARLHSAGHLIGYAAAASGWRAV---KGHH 118

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            P   R      +     + +++   VN ++A  LP  T               ++G   
Sbjct: 119 WPGEARVVFEPGEGARPIDAETLAREVNAVVAAALPRTT--------RMRDGMRVIG--- 167

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
                         G   +  CGGTHV+S+ ++  + IV     + 
Sbjct: 168 -------------FGDFEAQGCGGTHVASSAQVGRIVIVKVKEKKG 200


>gi|168179213|ref|ZP_02613877.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182670074|gb|EDT82050.1| threonyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 635

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+  H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGAHILAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAIK--LMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A      +++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGDEKNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMIEEAKKRDHRKLGKELDL 252


>gi|205374566|ref|ZP_03227362.1| threonyl-tRNA synthetase [Bacillus coahuilensis m4-4]
          Length = 643

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 92/250 (36%), Gaps = 31/250 (12%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G++      +K   G      +  R  L  +  + +           
Sbjct: 20  GTTTEDVAASISPGLK------KKSIAGKLNGQGVDLRTPLMIDGDIEIITAGSEDALEI 73

Query: 585 INHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  HL+  A+  + G   V      +   G  +DV     IT  +L +IE  +  I+
Sbjct: 74  LRHSTAHLMAQAIKRLYGDESVKLGVGPVIEGGFYYDVDSEHKITPEDLPAIEKEMKKIV 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NL +V   ++R++A A  A    G +Y   +       E   ++       LC G HV
Sbjct: 134 NENLDIVRSEVSRDEAKARFA----GDEYKVELLDAIPADEAVSIYEQGEFFDLCRGIHV 189

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG+I    ++S   I     R                ++ L+ +      ++  +  +
Sbjct: 190 PSTGKIKEFKLLS---IAGAYWR------------GNSDNKMLQRIYGTAFFTKDELKEQ 234

Query: 760 VEEIWEEYRK 769
           +  + EE ++
Sbjct: 235 L-RLLEEAKE 243


>gi|158321007|ref|YP_001513514.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141206|gb|ABW19518.1| threonyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 636

 Score = 78.2 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+++H+L  A+  +        G  +  +G  +D       T  +L  IE  +  I+ 
Sbjct: 73  LRHTSSHILAQAVKRLYPGTKLAIGPSVD-NGFYYDFDSEHVFTPEDLVKIEKEMEKIVK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +   ++ R +AI    A   G  Y   +     E E    +       LC G HV 
Sbjct: 132 EDLALEKFVLPRNEAIEF--AKKQGEDYKVELIQDLPEDEVISFYRQGEFTDLCAGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++  + ++S   I     R               +++ L+ +       + ++   +
Sbjct: 190 STGKVKAIKLLS---IAGAYWR------------GSEKNKMLQRIYGTSFTKKSDLEEHL 234

Query: 761 EEIWEEYRKLQLIHAKR 777
             + E  ++      K 
Sbjct: 235 NRLEEAKKRDHRKLGKE 251


>gi|251798759|ref|YP_003013490.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247546385|gb|ACT03404.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 645

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 87/234 (37%), Gaps = 21/234 (8%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG-SHVSQNGS 610
           G      +     + ++ ++ +             HS  HL+  A+  + G ++V     
Sbjct: 39  GKINGKVVDVYSPIESDAAIEIVTVESADGLEVYRHSTAHLMAQAIKRLYGNANVKLGIG 98

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA---L 667
            +  DG  +D+   + +T  +L  IE  +  I+ +NL +  R+++R++A+A        L
Sbjct: 99  PVIEDGFYYDIDMEQSLTPEDLTKIEKEMQRIVNENLDIRRRVVSRDEALAIFTELDDNL 158

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
                 D      +   D G     LC G H+ STG I    ++S   +     R     
Sbjct: 159 KLELIRDLPEDSVITMYDQGEFFD-LCRGPHLPSTGRIKAFKLLS---VAGAYWR----- 209

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                     +++ L+ +       +  +   +    EE +K       ++L++
Sbjct: 210 -------GDSKNKMLQRIYGTAFAKKAELDEHL-HFLEEAKKRDHRKLGKELKM 255


>gi|262044928|ref|ZP_06017970.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037655|gb|EEW38884.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 209

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 73/215 (33%), Gaps = 37/215 (17%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A +  +  +  D+T F+ + GGQ  D G   G     Q+ +         +H   +    
Sbjct: 23  AEADGRYAIELDRTLFHPQGGGQPADRGWIAG-----QVVETVAVRGERVLH---ILSQP 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     + + ID   R+  +  HSA HLL  A   +    V    +   P   R      
Sbjct: 75  LPLG-EVEMKIDASARQLHARLHSAGHLLGLAGEQLGWQPV---KAHHWPGEGRITFASR 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 +  ++   V    AQ+LP      +                      +  V + 
Sbjct: 131 NSAALPDASALLALVKAWQAQDLPRQVTFAD---------------------GMRKVGFG 169

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +   +    CGGTHV+   E+  + I S+  ++ G
Sbjct: 170 ELPAY---PCGGTHVARLAELGDIAI-SQIKMKKG 200


>gi|157370384|ref|YP_001478373.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
 gi|166987325|sp|A8GDQ5|SYT_SERP5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157322148|gb|ABV41245.1| threonyl-tRNA synthetase [Serratia proteamaculans 568]
          Length = 642

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  MRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISHDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLNAYLQRLEEAAK 241


>gi|28211884|ref|NP_782828.1| threonyl-tRNA synthetase [Clostridium tetani E88]
 gi|73919782|sp|Q891T0|SYT_CLOTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28204327|gb|AAO36765.1| threonyl-tRNA synthetase [Clostridium tetani E88]
          Length = 639

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 97/272 (35%), Gaps = 50/272 (18%)

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI------------------- 575
           + DG  +++    K ++   V               +   I                   
Sbjct: 6   LKDGKVIEVEKGVKVSD--IVMKISPALYKKAVGAKINGEIAELMTEIKEDSELEILTFD 63

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R+  ++ H+++H+L  A+  +        G  I  +G  +D       T   L+ I
Sbjct: 64  DEEGRK--TVRHTSSHILAQAVKRLYPEAKLAIGPAID-NGFYYDFDIDFTFTPEMLEKI 120

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  +  I+ +NL +    + RE+AI     A     Y   +     E E    +      
Sbjct: 121 EKEMAKIVKENLEIERFELPREEAIKLVKDA--SEPYKVELIEDLPEGEVISFYKQGDFV 178

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL--ASFL 749
            LC G H+ STG+I  + ++S   +     R               +++ L+ +   +FL
Sbjct: 179 DLCAGPHLPSTGKIKAIKLLS---VAGAYWR------------GDEKNKMLQRIYGTAFL 223

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           K S+   +    ++ EE ++       ++L L
Sbjct: 224 KKSE---LEAYLKMLEEAKRRDHRKLGKELDL 252


>gi|322807448|emb|CBZ05022.1| threonyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 635

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+  H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGAHILAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAI--NLMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A       ++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGNENNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMLEEAKKRDHRKLGKELDL 252


>gi|323490461|ref|ZP_08095668.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
 gi|323395865|gb|EGA88704.1| threonyl-tRNA synthetase [Planococcus donghaensis MPA1U2]
          Length = 642

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    +   +I  G+R      +K   G      +  R  L  +  + +     +   
Sbjct: 18  EQGVTTEEIAQSISPGLR------KKALAGKVDGKLVDLRTPLTEDGEIAIVTPESDEAL 71

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HS+ HLL  A+  +        G  I   G  +D+     ITS +L  IE  +  I
Sbjct: 72  EILRHSSAHLLAQAIKRMYPDAKLGIGPVI-EHGFYYDIDTETAITSEDLPLIEKEMKQI 130

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I +N+ V+   + R +A    AA  +   Y   +     + +   ++       LC G H
Sbjct: 131 INENVEVIRHDVTRAEAQERFAA--IEDPYKLELLEAIPDGDQVSIYEQGDFFDLCRGVH 188

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG++    ++S   +     R
Sbjct: 189 VPSTGKLKEFKLLS---VAGAYWR 209


>gi|190575251|ref|YP_001973096.1| threonyl-tRNA synthetase [Stenotrophomonas maltophilia K279a]
 gi|229558456|sp|B2FN79|SYT_STRMK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190013173|emb|CAQ46806.1| putative threonyl-tRNA synthetase [Stenotrophomonas maltophilia
           K279a]
          Length = 633

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   +P T  ++ +IE  + ++IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPDVKMVIGPVI-AEGFYYDIYSERPFTPDDMAAIEKRMGELIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I    A   G  Y      D    +             +C G HV
Sbjct: 130 QDYDVIKKMTPRAEVIEIFKAR--GEDYKLRLIEDMSEDIQAMGMYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +T  +    +     I     R +A   Q  R +     +K K L +++K
Sbjct: 188 PNTRFLKAFKLT---RISGAYWRGDAQNEQLQRIYGTAWADK-KQLEAYIK 234


>gi|44662851|gb|AAS47507.1| threonyl tRNA synthetase [Meiothermus ruber DSM 1279]
          Length = 149

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 21/153 (13%)

Query: 585 INHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             H+  H+L  A+  +          V      +  +G  +D+   +PI   +L  IE+ 
Sbjct: 2   FRHTLAHVLAQAVRELYTERGYRPEEVKLAIGPVIENGFYYDMDVPEPIRGEDLPIIEEK 61

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
           +  I+A NLP+   ++ RE+A+   A       Y   +     E E+   ++        
Sbjct: 62  MRRIVAANLPLKRFVLPREEALKRYAGI---DPYKTELIQDLPESEELSFYAQGDDTYGF 118

Query: 692 -ALCGGTHVSSTGEIML-LYIVSESSIRAGIRR 722
             LC G HV STG I     +     I     R
Sbjct: 119 TDLCRGPHVPSTGRIPPHFKLT---GIAGAYWR 148


>gi|311031377|ref|ZP_07709467.1| threonyl-tRNA synthetase [Bacillus sp. m3-13]
          Length = 643

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI-DYQNRR 581
           E G    D   +I  G++      +K   G      I  R  +  +  + + + D     
Sbjct: 18  ERGTTTEDIAASISPGLK------KKAIAGKLNGELIDLRSPINIDGEISIIMQDSDEAL 71

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +   HS  HL+  A+  + G +V      +  +G  +D+   + +T  +L+ IE  +  
Sbjct: 72  GIMR-HSTAHLMAQAIKRLYG-NVKLGIGPVIENGFYYDIDLEESLTPEDLQKIEKEMKK 129

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+++NL VV   ++RE+A+       L  +    +     E E   ++       LC G 
Sbjct: 130 IVSENLDVVRVEVSREEALRRYE--ELNDELKLELIRELPEGETISIYEQGEFFDLCRGI 187

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG+I    ++S   I     R
Sbjct: 188 HVPSTGKIKEFKLLS---IAGAYWR 209


>gi|206889512|ref|YP_002249047.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741450|gb|ACI20507.1| threonyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 617

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++ HA+  +        G  I  DG  +D     P T  +L+ IE  +++II 
Sbjct: 52  LRHSVAHIMAHAVKDLFPDVKVTIGPAI-EDGFYYDFDRDTPFTEEDLQKIEKRMHEIIK 110

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHV 699
              P + + +++++AI    +  LG  Y   +     +     YE+GG     LC G H+
Sbjct: 111 SRQPFIRKEISKDEAIKLFES--LGESYKIEIINEIEDEKVSIYEEGGFID--LCRGPHI 166

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
             TG +    ++S   +     R
Sbjct: 167 PHTGIVKAFKLLS---VAGAYWR 186


>gi|255280775|ref|ZP_05345330.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
 gi|255268712|gb|EET61917.1| threonine--tRNA ligase [Bryantella formatexigens DSM 14469]
          Length = 642

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 22/198 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H++  A+  +        G  I  DG  +D+    P+T+ +L+ IE  +  I+
Sbjct: 69  AFRHTTSHIMAQAIKRLYPDVKLAIGPSI-ADGFYYDIDSDTPLTAEDLEKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            + LP+      R++AIA          Y   +     E  +   +       LC G H+
Sbjct: 128 KEALPITRFTKPRDEAIAYF--KEKNEPYKVELIEDLPEDAEISFYQQGEFVDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    + S             + G  A      +++ L  +       + ++   
Sbjct: 186 MSTKPVKAFKLTS-------------LAG--AYWRGSEKNKMLTRIYGTSFTKKADLEAY 230

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  + E  ++      K+
Sbjct: 231 ITRMEEAKKRDHRKLGKQ 248


>gi|187776940|ref|ZP_02993413.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
 gi|187775599|gb|EDU39401.1| hypothetical protein CLOSPO_00484 [Clostridium sporogenes ATCC
           15579]
          Length = 635

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+ +H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGSHMLAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAIK--LMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A       ++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGDENNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMLEEAKKRDHRKLGKELDL 252


>gi|77360339|ref|YP_339914.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875250|emb|CAI86471.1| threonyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125]
          Length = 636

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+   + ++  +L +IE  +  +  
Sbjct: 71  IRHSCAHLIGHAVKQLFPDAKMAIGPTID-NGFYYDIDMEQSLSQDDLDAIEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  VV + ++ ++A    AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 TNYDVVKKTVSWQEARDVFAAR--GETYKIEILDENIAKDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +        I+    +     R ++      R +     +K K L ++LK
Sbjct: 188 PNMKFCQNFKIMK---VAGAYWRGDSENKMLQRIYGTAWGDK-KQLKAYLK 234


>gi|297243465|ref|ZP_06927397.1| threonyl-tRNA synthetase [Gardnerella vaginalis AMD]
 gi|296888510|gb|EFH27250.1| threonyl-tRNA synthetase [Gardnerella vaginalis AMD]
          Length = 660

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 23/177 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 32  PLHDGDTVESVALDSEDGIAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 89

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN--DR 675
              P T  +LK IE ++  II ++     R++  ++A A          L+G K    D 
Sbjct: 90  VDTPFTPDDLKQIEKHMQRIIKESQSFRRRVVTEDEARAEEANQPYKLELIGDKEAALDP 149

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                +   +  ++           S LC G H+ +T  I    +     + A   R
Sbjct: 150 AAAGEISKHELSMYDNLDREGNKVWSDLCRGPHLPNTRYIKAFKL---ERVAAAYWR 203


>gi|221633051|ref|YP_002522276.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
 gi|221156502|gb|ACM05629.1| threonyl-tRNA synthetase [Thermomicrobium roseum DSM 5159]
          Length = 596

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 1/132 (0%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H++  A+  +        G  I  DG  +D    +P+T  +L+ IE  + +I 
Sbjct: 24  RMRHSCAHVMAQAVLELFPGAKLGIGPAI-ADGFYYDFDLPRPLTPEDLEHIERRMEEIK 82

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A   P V R++ RE+A           +         V         + LC G HV  T 
Sbjct: 83  AAAYPFVRRVVTREEARELFRDQPYKLELIAEFPPDEVITTYTHDGFTDLCRGPHVRDTS 142

Query: 704 EIMLLYIVSESS 715
           +I    ++  S 
Sbjct: 143 QIGFFKLLRVSG 154


>gi|148381087|ref|YP_001255628.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932923|ref|YP_001385460.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935084|ref|YP_001388867.1| threonyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|166223333|sp|A7FY87|SYT_CLOB1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223334|sp|A5I6L8|SYT_CLOBH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148290571|emb|CAL84700.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152928967|gb|ABS34467.1| threonyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152930998|gb|ABS36497.1| threonine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 635

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+ +H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGSHMLAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAIK--LMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESS 715
            STG++  + ++S + 
Sbjct: 187 PSTGKVKSVKLLSLAG 202


>gi|119572223|gb|EAW51838.1| alanyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 192

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 3/145 (2%)

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
             +  ++++ ++  +      ++++    +            +  + S   +K L   + 
Sbjct: 41  ETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALK 100

Query: 815 ALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872
             +        ML  +  E  K + L  V ++  +R   A +  +  +  L  G GGG+ 
Sbjct: 101 LFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSG-LMDGKGGGKD 159

Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897
             AQ+ G N     +A+    SF +
Sbjct: 160 VSAQATGKNVGCLQEALQLATSFAQ 184


>gi|257885297|ref|ZP_05664950.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
 gi|257821149|gb|EEV48283.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,501]
          Length = 645

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 4/176 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      +     +    S+ +           + HSA HL+  A+  +  +   
Sbjct: 33  KKALAGKVNGKLVDLTRPIEENASIEIITPDHEDALGLVRHSAAHLMAQAMRRLYPNIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              +T+ +L +IE  +  I+ +NLP+  R++++++A+   A+ 
Sbjct: 93  GVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +    +    +     G     LC G HV STG I +  ++S   +     R
Sbjct: 153 PYKVELISELPEEVITAYQQGEFID-LCRGPHVPSTGRIQVFKLLS---VAGAYWR 204


>gi|226226691|ref|YP_002760797.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
 gi|226089882|dbj|BAH38327.1| threonyl-tRNA synthetase [Gemmatimonas aurantiaca T-27]
          Length = 660

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 70/215 (32%), Gaps = 17/215 (7%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            LR   + V+  D   R    + HS  H+L  A+  +        G  I  DG  +D   
Sbjct: 56  PLRKSGAFVVITDKDPRALAVLRHSGAHILATAVRRLRPDAKIGFGPAID-DGFYYDFEV 114

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVE 682
            KP T  +L + E  +  + A+  P V   ++ E+A        L   +  D      V 
Sbjct: 115 EKPFTPEDLAAFEAEMKKVAAEKYPFVRAEVSVEEAKGLFVDDPLKLERLADFEGTDEVI 174

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                     LC G HV  T  +    ++  +                A      + + L
Sbjct: 175 STYTDGPFIDLCRGPHVPDTSHLKHFKLLHTAG---------------AYWRGDVKRQML 219

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           + + +     +  +   +  + E  ++   +  K 
Sbjct: 220 QRIYATAFFKKDELEQHLHNLEEAKKRDHRVLGKA 254


>gi|296327515|ref|ZP_06870061.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155341|gb|EFG96112.1| threonine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 637

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 13/215 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          +    IL  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 31  KKSVGAKVDGKNVDMSYILDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPDTK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 90  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKRIVKENIKLEKYVLPRDEAIEYF-R 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   V     + E    +       LC GTHV STG +    +    ++     
Sbjct: 148 DVDKNKYKVEVVEGIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFKL---RTVAGAYW 204

Query: 722 RIEAITG--QRARSHLMGQDEKLKSLASFLKVSQG 754
           R  +     QR   +    +E+LK     ++ ++ 
Sbjct: 205 RGNSKNKMLQRIYGYSFSNEERLKHHLKLMEEAEK 239


>gi|294101704|ref|YP_003553562.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
 gi|293616684|gb|ADE56838.1| threonyl-tRNA synthetase [Aminobacterium colombiense DSM 12261]
          Length = 633

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A  ++        G  I  +G  +D+   + I+   L  IE  +  +  
Sbjct: 68  IRHSAAHLMAQAFQSLYPEAHFGIGPSI-KNGFYYDMELPESISEEALPKIEKEMKRLAK 126

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P+  +I+ +E+AIA       G KY   + +  +E     ++       LC G HV 
Sbjct: 127 RAFPIERQILKKEEAIAFFKER--GEKYKVEL-IEEIEDGTVSLYRQGDYVDLCRGPHVP 183

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +T  I    ++S   +     R
Sbjct: 184 NTSWIKHFKLLS---VAGAYWR 202


>gi|225568704|ref|ZP_03777729.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
 gi|225162203|gb|EEG74822.1| hypothetical protein CLOHYLEM_04783 [Clostridium hylemonae DSM
           15053]
          Length = 583

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H+L  A+  +        G  +  DG  +D   S P T+  L  +E  +  I+
Sbjct: 23  AFRHTTSHILAQAVKRLYPDTKLAIGPAV-KDGYYYDFEFSFPFTTEHLAEVEKEMRRIV 81

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++LP+   +++RE+A+        G  Y   +     + E+  ++        C G HV
Sbjct: 82  KESLPLERSVVSREEALK--LMEERGESYKVEMIQALPKEEEISLYRQGEFVDFCAGPHV 139

Query: 700 SSTGEIMLLYIVSESS 715
           S+T  I    + S + 
Sbjct: 140 SNTSVIKAFKLQSVAG 155


>gi|262038762|ref|ZP_06012119.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
 gi|261747220|gb|EEY34702.1| threonine--tRNA ligase [Leptotrichia goodfellowii F0264]
          Length = 636

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 27/212 (12%)

Query: 509 QKVEVVFDQTPFYAEAGGQLG-DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567
           +K+E     T F       LG +T  AI DG+++  + + +K+  I +  +  E G+   
Sbjct: 12  RKIEQPMTVTEFAKTISLSLGKETIGAIIDGVQVDPSHIIEKSGSIKIITSTSEEGV--- 68

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
                            I HSA H++  A+  +        G  I  +G  +D    KP 
Sbjct: 69  ---------------AIIRHSAAHIMAQAVQKLFPGTKVTIGPVI-ENGFFYDFDPEKPF 112

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEY 683
           T  +L  IE+ +  I+ +N       M+ EDA      A +G  Y     D + V  V  
Sbjct: 113 TEEDLTKIEEEMKKIVKENYEFKRSEMSAEDAKKLF--AEMGENYKVEIIDDLGVDKVSI 170

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              G     LC GTH+ STG +    ++S + 
Sbjct: 171 YQQGEFVD-LCRGTHIPSTGYLKAFKLMSTAG 201


>gi|19703946|ref|NP_603508.1| threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|22654111|sp|Q8RFS6|SYT_FUSNN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19714122|gb|AAL94807.1| Threonyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 620

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 13/215 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          +    IL  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 14  KKSVGAKVDGKNVDMSYILDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPDTK 72

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 73  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKRIVKENIKLEKYVLPRDEAIEYF-R 130

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   V     + E    +       LC GTHV STG +    +    ++     
Sbjct: 131 DVDKNKYKVEVVEGIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFKL---RTVAGAYW 187

Query: 722 RIEAITG--QRARSHLMGQDEKLKSLASFLKVSQG 754
           R  +     QR   +    +E+LK     ++ ++ 
Sbjct: 188 RGNSKNKMLQRIYGYSFSNEERLKHHLKLMEEAEK 222


>gi|310779473|ref|YP_003967806.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748796|gb|ADO83458.1| threonyl-tRNA synthetase [Ilyobacter polytropus DSM 2926]
          Length = 640

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 12/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D    +  T  +L  IE  +  I+ 
Sbjct: 71  IRHSAAHLMAQAVIRLFPETKVAIGPAI-ENGYYYDFDPKEQFTEEDLVKIEAEMKKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +++ V    M REDAI       LG  Y   +     + E    +       LC G HV 
Sbjct: 130 EDIKVERIEMTREDAIKHFE--ELGENYKVEIITDIAKGEMLSFYKQGEFMDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVSQG 754
           ST  I    +    S+     R ++     QR        ++KLK+   FL+ ++ 
Sbjct: 188 STKYIKAFKL---KSLAGAYWRGDSKNKMLQRIYGFAFSDEKKLKAHLKFLEEAEK 240


>gi|291617247|ref|YP_003519989.1| ThrS [Pantoea ananatis LMG 20103]
 gi|291152277|gb|ADD76861.1| ThrS [Pantoea ananatis LMG 20103]
          Length = 642

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 12/191 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ +           I HS  HLL HA+  +        G  I  +G  +DV  
Sbjct: 50  PITDDASVAIITAKDEAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDI 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            + +T  +++ +E  ++ +   N  VV + ++ ++A    AA   G  Y   +   ++ +
Sbjct: 109 DRTLTQEDIELLEKRMHQLAETNYDVVKKKVSWQEARDVFAAR--GEVYKTTILDENISH 166

Query: 684 ED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           +D  G++       +C G HV +        +     I     R ++      R +    
Sbjct: 167 DDRPGLYHHEEYVDMCRGPHVPNMRFCHHFKL---QKISGAYWRGDSDNKMLQRIYGTAW 223

Query: 739 DEKLKSLASFL 749
            +K K LA++L
Sbjct: 224 ADK-KQLAAYL 233


>gi|56965736|ref|YP_177470.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
 gi|56911982|dbj|BAD66509.1| threonyl-tRNA synthetase [Bacillus clausii KSM-K16]
          Length = 637

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HAL  +  + V      +  DG  +DV   +PIT  +L  IE  +  II 
Sbjct: 75  LRHSTAHLLAHALKRLYPA-VHLGVGPVIGDGFFYDVALDQPITVGDLLRIEQMMKQIIK 133

Query: 645 QNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +++ +  + + RE A            LL     D    V   YE G  +   LC G H+
Sbjct: 134 EDMEITRKEVTREKAKQLFKQDPLKLELLEDIPPDETVTV---YEQGDFYD--LCRGPHI 188

Query: 700 SSTGEIMLLYIVSESS 715
            STG+I    +   S 
Sbjct: 189 PSTGKIKHFKLTKVSG 204


>gi|239905697|ref|YP_002952436.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
 gi|259516431|sp|C4XL11|SYT_DESMR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239795561|dbj|BAH74550.1| threonyl-tRNA synthetase [Desulfovibrio magneticus RS-1]
          Length = 647

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 15/171 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+ T+  S     G  I  +G  +D  + +P T  +L++IE  +   IA
Sbjct: 71  IRHSAAHIMAEAVKTLFPSVQVTIGPAI-ENGFYYDFAYERPFTPDDLEAIEAEMQKSIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
            N P     + + DA A  AA   G  Y   +   ++  +   ++     + LC G HV 
Sbjct: 130 ANQPFSCTYVPKADAKALFAAQ--GESYKLEIMDENIVGDTVSLYRHGTFTDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           +TG +  + ++S   +     R     G   R  L        + A+ LK 
Sbjct: 188 TTGLVRAVKLLS---VAGAYWR-----GDEKRPMLQRIYGTAFASAADLKT 230


>gi|262276749|ref|ZP_06054542.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
 gi|262223852|gb|EEY74311.1| threonyl-tRNA synthetase [alpha proteobacterium HIMB114]
          Length = 637

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +     +     I H + H +  A+  +        G  I  +G  +D   
Sbjct: 50  EISKDSKVKIITMDDDYALELIRHDSAHCMAMAVQELFPGTQVTIGPVI-ENGFYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P + ++L+ IE  +N+II ++      + +R+ AI       +G  Y   +     + 
Sbjct: 109 DEPFSDSDLEKIEKKMNEIIDKDPKTTREVWDRDKAIQHF--KKIGENYKAEIIESIPKG 166

Query: 684 EDGGVH----SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E+  ++       LC G H+ S G I          +     R
Sbjct: 167 EELSIYFHGDWHDLCRGPHLPSLGRIG--KAFKLMKVAGAYWR 207


>gi|218886086|ref|YP_002435407.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226701453|sp|B8DPN2|SYT_DESVM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218757040|gb|ACL07939.1| threonyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 644

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +        G  I   G  +D  + +P +  +L++IE  +  I+A
Sbjct: 71  IRHSAAHIMAEAVQKLFPGVKVTIGPAID-SGFYYDFDYERPFSVDDLEAIEAEMQKIVA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
              P     M +++A+A      +G  Y     V  +  +   V+ S     LC G H+ 
Sbjct: 130 AAHPFTRTEMTKDEAVALFEG--MGEAYKVE-IVRDIPADTVSVYRSGDFVDLCRGPHIP 186

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
            T  +    ++S   +     R
Sbjct: 187 DTSFVKAFKLLS---VAGAYWR 205


>gi|327393701|dbj|BAK11123.1| Threonyl-tRNA synthetase ThrS [Pantoea ananatis AJ13355]
          Length = 642

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++ +  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIELLEKRMHQLAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  VV + ++ ++A    AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TNYDVVKKKVSWQEARDVFAAR--GEVYKTTILDENISHDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     I     R ++      R +     +K K LA++L
Sbjct: 188 PNMRFCHHFKL---QKISGAYWRGDSDNKMLQRIYGTAWADK-KQLAAYL 233


>gi|163851744|ref|YP_001639787.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
 gi|163663349|gb|ABY30716.1| threonyl-tRNA synthetase [Methylobacterium extorquens PA1]
          Length = 675

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  +
Sbjct: 66  RALELIRHDCAHVLAEAVQALWPGTQVTIGPVI-ENGFYYDFAKDEPFTPEDFPKIEAKM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II+++ P    +  R+D  A  A    G  Y   +       ED  ++       LC 
Sbjct: 125 REIISRDAPFTKEVWKRDDVKALFAER--GESYKVELVDAIPPGEDLKIYRQGEWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG++     ++    +     R
Sbjct: 183 GPHMTSTGKVGAAFKLMK---VAGAYWR 207


>gi|315122407|ref|YP_004062896.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495809|gb|ADR52408.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 653

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 9/150 (6%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R  + I HS  H++  A+ +I        G  I  +G  +D    +P +S +   IE
Sbjct: 65  EDPRSLVVIRHSCAHIMAEAVQSIWPKTQVAIGPVI-ENGFYYDFNREEPFSSDDFAKIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             +++I+ ++ P   + ++RE A     +      Y   +       +D  +++      
Sbjct: 124 KKMHEIVTRDSPFCKKRLSREQARKLFESK--NETYKLEILEKIPAEQDVTIYNQGEWLD 181

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           LC G HV STG+I          +     R
Sbjct: 182 LCRGPHVQSTGQIKKF--FKLMKVAGAYWR 209


>gi|309389087|gb|ADO76967.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halanaerobium
           praevalens DSM 2228]
          Length = 643

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 35/270 (12%)

Query: 523 EAGGQLGDTGCAIGDGI---RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           EAG  + D   +IG G+    +     +K+ +  F     VE  I+  +    L I    
Sbjct: 17  EAGVTIKDVAYSIGSGLGRDAIAGIVNEKEVDADFKIEKDVELSIITIDSQEALEI---- 72

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                I H+A+H++  A+  +  +     G  I  DG  +D    +      L  IE  +
Sbjct: 73  -----IRHTASHVMAQAVKRLYDNVQVAIGPAI-EDGFYYDFDLEETFNEESLVEIEAEM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCG 695
             II + + +  +++ RE+A     +     KY     D +    + +   G +   LC 
Sbjct: 127 KKIIEEAIKIEKKVLPREEAFELMKSR--NEKYKLELIDELDDQMISFYFQGDY-VDLCR 183

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G H+ STG +    ++   ++     R                ++ L+ +       + +
Sbjct: 184 GPHLPSTGYVKAFKLL---NVAGAYWR------------GDENNQMLQRIYGTAFAKEKD 228

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           +   +  + E  ++      K     +++D
Sbjct: 229 LEKYLNRVEEAKKRDHRKLGKELDLFSMQD 258


>gi|253682125|ref|ZP_04862922.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
 gi|253561837|gb|EES91289.1| threonine--tRNA ligase [Clostridium botulinum D str. 1873]
          Length = 637

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 22/198 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I  +G  +D       T   L+ IE  +N I+
Sbjct: 70  TLRHTASHILAQAVKRLYPDVKLAIGPSI-ENGFYYDFDAEFSFTPEILEKIEKEMNKIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHV 699
            +NL +    + R++AI           Y   +     E      +       LC G HV
Sbjct: 129 KENLELKKFTLPRDEAIKF--MKERNEDYKVELIEDLPEDAVISFYEEGEFVDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST E+  + ++S   +     R                ++ L+ +       + ++   
Sbjct: 187 PSTKEVKAIKLLS---VAGAYWR------------GNENNKMLQRIYGTAFTKKADLEQY 231

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  + E  ++      K 
Sbjct: 232 LHMLEEAKKRDHRKLGKE 249


>gi|46199818|ref|YP_005485.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
 gi|73919837|sp|Q72HH1|SYT_THET2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46197445|gb|AAS81858.1| threonyl-tRNA synthetase [Thermus thermophilus HB27]
          Length = 659

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   A+G+G        ++    I           L     + L  +     Q  
Sbjct: 16  GATAKDVARALGEGWE------RRAVGAIVDGELYDLLKPLPQGAKVRLLTEKDPEFQTL 69

Query: 585 INHSATHLLHHALST------ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             H+  H+L  A+             V      +   G  +D+   +P++  +L +IE  
Sbjct: 70  FRHTLAHVLAQAVKEFFREKGYDPESVRLGVGPVIEKGFYYDIEAPEPLSDEDLPAIEAK 129

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
           + +I+ ++LP+   +++RE+A+A          Y   + +   E E+   +         
Sbjct: 130 MREILKRDLPLRRFVLSREEALARYRGK---DPYKTELILEIPEGEEISFYQQGDEAYGF 186

Query: 692 -ALCGGTHVSSTGEIML-LYIVSESSIRAGIRR-------------IEAITGQRARSHLM 736
             LC G HV STG I     +     +     R             +   T +  + +L 
Sbjct: 187 TDLCRGPHVPSTGRIPPHFKLT---HVAGAYWRGDENRPMLQRVYGVAFRTAEELKEYLW 243

Query: 737 GQDEKLKS 744
             +E  K 
Sbjct: 244 QLEEAKKR 251


>gi|242239483|ref|YP_002987664.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
 gi|242131540|gb|ACS85842.1| threonyl-tRNA synthetase [Dickeya dadantii Ech703]
          Length = 642

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   +P+T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPETQMAIGPVID-NGFYYDVDLDRPLTQEDLDLLEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GESYKVAILDENISRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSNNKMLQRIYG-TAWADKKQLSAYLQRLEEAAK 241


>gi|296117435|ref|ZP_06836023.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976037|gb|EFG82827.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 642

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 9/143 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H A H+L  A+ ++        G  I  +G  +D   ++P T  +   IE  + +I+
Sbjct: 70  MIRHDAAHVLAEAVQSLWPGTQVTIGPSI-ENGFYYDFYRNEPFTPEDFPRIEARMREIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             N P       RE+AI        G ++   +     E E+  ++       LC G H+
Sbjct: 129 DANAPFTRETWPREEAIRFFEER--GERFKAELIRDLPEDEEISIYRQGEWLDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
             TG+I          +     R
Sbjct: 187 RGTGDIG--KAFRLMKVAGAYWR 207


>gi|291277001|ref|YP_003516773.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
 gi|290964195|emb|CBG40041.1| threonyl-tRNA synthetase [Helicobacter mustelae 12198]
          Length = 603

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + +  D        I HS  HL+  A+  +        G  +  +G  +D   +  I+  
Sbjct: 27  VEILFDNSQDSLSIIRHSCAHLMAQAIKELYPDAKFFVGPVVD-EGFYYDFKTAHKISQE 85

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  + +I  + LP++   M R++A+       L      +  +  +  +D GV++
Sbjct: 86  DLAKIEKQMKEIAKRKLPIIKSTMTRQEALEKFQDDELK-----QAVMSKIPGDDFGVYA 140

Query: 691 S----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQD 739
                 LC G H+ +T  +    +   +            + RI  I    A +     +
Sbjct: 141 QGDFEDLCRGPHLPNTKFLHAFKLTKLAGAYLGGDESAEMLTRIYGI----AFADKEMLN 196

Query: 740 EKLKSLASFLK 750
             L  +    K
Sbjct: 197 AYLHQIEEAKK 207


>gi|254294721|ref|YP_003060744.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
 gi|254043252|gb|ACT60047.1| threonyl-tRNA synthetase [Hirschia baltica ATCC 49814]
          Length = 654

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 8/157 (5%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  +  + L      +    I H A H+L  A+  +        G  I  DG  +D   
Sbjct: 50  PLEGDSQVALHSKDDPQGLEIIRHDAAHILAQAVQKLFPGTQVTIGPVID-DGFYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +  ++ + + IE  +N +I  + P+V  + NR++AI       +G  Y   +       
Sbjct: 109 KEAFSTDDFEKIEKEMNRVIDADYPIVREVWNRDEAIKMF--KDIGEDYKAELISDLPVD 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEI-MLLYIVSESS 715
           E   V+       LC G H+ STG++     ++  + 
Sbjct: 167 ETITVYRQGDWFDLCKGPHLPSTGKLPKAFKLMKLAG 203


>gi|291287861|ref|YP_003504677.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885021|gb|ADD68721.1| threonyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 637

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 6/184 (3%)

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++ +   +K         +      L    ++ L  +        I HS  HL+ HA+  
Sbjct: 25  QISVGLAKKAIAAEINGTSKDIYAELSDGDTVKLITEKDPEALDIIRHSTAHLMAHAVKR 84

Query: 600 ILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
           +        G  I  DG  +D     +  T  +LK+IE  +  I A+ +PV  R +   D
Sbjct: 85  LFDDVKVTIGPII-KDGFYYDFDMGDRKFTPDDLKAIEKMMAKIAAEAIPVKRRDVKSSD 143

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
           A+   A      +    +    V   D G  +  LC G HV +T  +    ++S   +  
Sbjct: 144 ALKEFADEKYKVELITDIGDEHVSLYDQGDFTD-LCRGPHVDNTKRLKHFKLLS---VAG 199

Query: 719 GIRR 722
              R
Sbjct: 200 AYWR 203


>gi|70726243|ref|YP_253157.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68446967|dbj|BAE04551.1| threonyl-tRNA synthetase 1 [Staphylococcus haemolyticus JCSC1435]
          Length = 645

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 9/173 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F +  +     L  + S+ +     +     + HS  HL+  AL  + G    
Sbjct: 35  KKAVAGKFKNQMVDLTRPLEEDGSIEIVTPGSDEALEVLRHSTAHLMAQALKRLYGDVKF 94

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I   G  +D    + ++S + + IE  +  I+ +N  +  ++++RE+A +     
Sbjct: 95  GVGPVID-GGFYYDFDMDEKVSSDDFEKIEKTMKQIVDENHKIERKVVSREEAKSFF--- 150

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
                Y   +     E E   ++S      LC G HV ST +I    ++S + 
Sbjct: 151 -KDDPYKLELIDAIPEDESVTLYSQGEFTDLCRGVHVPSTSKIKEFKLLSTAG 202


>gi|302387069|ref|YP_003822891.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197697|gb|ADL05268.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 629

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           S  H+ +H+L  A+  +        G  I  DG  +D    K I++ +L +IE+ +  I+
Sbjct: 69  SFRHTTSHILAQAIKRLYPGAKLAIGPAI-EDGFYYDFDFEKAISNDDLSAIENEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    +NR++AIA       G  Y  ++     + E+   +       LC G H+
Sbjct: 128 KENFEIKRFTLNRDEAIAF--MKKRGEDYKVQLINDLPKDEEISFYEQGDFVDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST  +    + S   +     R
Sbjct: 186 LSTKYVKAFKLTS---VAGAYWR 205


>gi|253583464|ref|ZP_04860662.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
 gi|251834036|gb|EES62599.1| threonine-tRNA ligase [Fusobacterium varium ATCC 27725]
          Length = 637

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D    +  T  +L  IE  +  I+ 
Sbjct: 70  IRHSTAHLMAQAVIRLFPGTKVAIGPAI-ENGFYYDFDPKEQFTEEDLAKIEAEMKKIVK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +   +M RE+AI       LG  Y   +     + E    +       LC G HV 
Sbjct: 129 ENEKIERVMMTREEAIEHFEK--LGEIYKVEIIKEIAQGEMLSFYKQGEFMDLCRGPHVP 186

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  +    +    S+     R
Sbjct: 187 STSYLKAFKL---KSVAGAYWR 205


>gi|261418266|ref|YP_003251948.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|319767774|ref|YP_004133275.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
 gi|261374723|gb|ACX77466.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC61]
 gi|317112640|gb|ADU95132.1| threonyl-tRNA synthetase [Geobacillus sp. Y412MC52]
          Length = 652

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 28/231 (12%)

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              +   +      +++T D      +   HS  HL+  A+  + G +V      +  +G
Sbjct: 47  FVDLRTPLHEDGELVIITQDMPEALDILR-HSTAHLMAQAIKRLYG-NVKLGVGPVIENG 104

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
             +D+     +T  +L  IE  +  I+ +NL +V + ++RE+AI       +G +    +
Sbjct: 105 FYYDIDMEHKLTPDDLPKIEAEMRKIVKENLDIVRKEVSREEAIRLYE--EIGDELKLEL 162

Query: 677 RVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                E E   ++       LC G HV STG+I    ++S S                A 
Sbjct: 163 IADIPEGEPISIYEQGEFFDLCRGVHVPSTGKIKEFKLLSISG---------------AY 207

Query: 733 SHLMGQDEKLKSL--ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                 ++ L+ +   +F K      + R   + EE ++       ++L+L
Sbjct: 208 WRGDSNNKMLQRIYGTAFFK---KEDLDRYLRLLEEAKERDHRKLGKELEL 255


>gi|206580341|ref|YP_002237974.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288934884|ref|YP_003438943.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|290509026|ref|ZP_06548397.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
 gi|238065116|sp|B5XQC6|SYT_KLEP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|206569399|gb|ACI11175.1| threonyl-tRNA synthetase [Klebsiella pneumoniae 342]
 gi|288889593|gb|ADC57911.1| threonyl-tRNA synthetase [Klebsiella variicola At-22]
 gi|289778420|gb|EFD86417.1| threonyl-tRNA synthetase [Klebsiella sp. 1_1_55]
          Length = 642

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  +  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPNTKMAIGPVVD-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GETYKVSILDENIAHDDKPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|56421254|ref|YP_148572.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297529120|ref|YP_003670395.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
 gi|73919792|sp|Q5KWD2|SYT_GEOKA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56381096|dbj|BAD77004.1| threonyl-tRNA synthetase [Geobacillus kaustophilus HTA426]
 gi|297252372|gb|ADI25818.1| threonyl-tRNA synthetase [Geobacillus sp. C56-T3]
          Length = 652

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 90/231 (38%), Gaps = 28/231 (12%)

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
              +   +      +++T D      +   HS  HL+  A+  + G +V      +  +G
Sbjct: 47  FVDLRTPLHEDGELVIITQDMPEALDILR-HSTAHLMAQAIKRLYG-NVKLGVGPVIENG 104

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
             +D+     +T  +L  IE  +  I+ +NL +V + ++RE+AI       +G +    +
Sbjct: 105 FYYDIDMEHKLTPDDLPKIEAEMRKIVKENLDIVRKEVSREEAIRLYE--EIGDELKLEL 162

Query: 677 RVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                E E   ++       LC G HV STG+I    ++S S                A 
Sbjct: 163 IADIPEGEPISIYEQGEFFDLCRGVHVPSTGKIKEFKLLSISG---------------AY 207

Query: 733 SHLMGQDEKLKSL--ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                 ++ L+ +   +F K      + R   + EE ++       ++L+L
Sbjct: 208 WRGDSNNKMLQRIYGTAFFK---KEDLDRYLRLLEEAKERDHRKLGKELEL 255


>gi|78357681|ref|YP_389130.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123741221|sp|Q30Y11|SYT_DESDG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78220086|gb|ABB39435.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 644

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +        G  I  +G  +D  + +P T+ +L++IE  ++ II 
Sbjct: 71  IRHSAAHVMADAVQRLFPGVKVTIGPAI-ENGFYYDFDYERPFTADDLEAIEAEMDKIIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTHVS 700
              P    +M++++A    A   +G  Y     D V    V     G     LC G H+ 
Sbjct: 130 AAHPFERSVMSKDEAKKMFAD--MGETYKLELIDAVPDDIVSIYRSGDFVD-LCRGPHIP 186

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
            TG I    ++S   +     R
Sbjct: 187 DTGCINAFKLMS---VAGAYWR 205


>gi|322383766|ref|ZP_08057517.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151978|gb|EFX44921.1| threonyl-tRNA synthetase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 649

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 15/206 (7%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y   G  +G+   +I  G++ Q   V  K +G  V  +         E   + T+D +  
Sbjct: 14  YP-KGTTVGEVAASISSGLKKQ--AVAGKMDGQPVDLSRPIEYNAAVE---IWTLDSEEG 67

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNV 639
            ++   HS  HL+  AL  I G    + G   +   G  +D+     +T  +L  IE  +
Sbjct: 68  LEV-YRHSTAHLMAQALKRIYGEKAVKLGIGPVIEGGFYYDIDMETSLTPEDLGKIEKEM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGG 696
             II ++LP+  R++++E+AI          K     +     ++   D G     LC G
Sbjct: 127 EKIIKEDLPITRRVVSKEEAIRIYEEIEDPLKLELIHEFPEDATITIYDQGEFFD-LCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            H+ STG I    ++S   +     R
Sbjct: 186 PHLPSTGRIKAFKLLS---VAGAYWR 208


>gi|78184510|ref|YP_376945.1| threonyl-tRNA synthetase [Synechococcus sp. CC9902]
 gi|123757112|sp|Q3AYC6|SYT_SYNS9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78168804|gb|ABB25901.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           sp. CC9902]
          Length = 611

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 19/210 (9%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L I HS +H++  A+  +  +     G   T  G  +D  + +P T  +LK+I+  + 
Sbjct: 33  QLLKIRHSMSHVMAMAVQKLFPNAQVTIGPW-TETGFYYDFDNPEPFTEDDLKAIKKEMG 91

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSALCGGTHV 699
            II + LP+    ++R++A     A     K     R+   +     G     LC G HV
Sbjct: 92  KIIGRKLPLERIEVSRDEAETRIKAQNEPYKLEILERLQEPITLYTLGDQWWDLCAGPHV 151

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG- 758
            +T E+         S+     R     G   ++ L                +   +   
Sbjct: 152 ENTKELHP-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEH 198

Query: 759 ---RVEEIWEEYRKLQLIHAKRKLQLNVED 785
              +VE +  ++R+L        ++     
Sbjct: 199 KRRKVEALRRDHRRLGKDLELFSIEDEAGA 228


>gi|238893014|ref|YP_002917748.1| alanyl-tRNA synthetase-related protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545330|dbj|BAH61681.1| alanyl-tRNA synthetase-related protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|238774017|dbj|BAH66514.1| alanyl-tRNA synthetase-related protein [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238774038|dbj|BAH66534.1| alanyl-tRNA synthetase-related protein [Klebsiella pneumoniae]
          Length = 209

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 73/215 (33%), Gaps = 37/215 (17%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A +  +  +  D+T F+ + GGQ  D G   G     Q+ +         +H   +    
Sbjct: 23  AEADGRYAIELDRTLFHPQGGGQPADRGWIAG-----QVVETVAVRGERVLH---ILSQP 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     + + ID   R+  +  HS  HLL  A   +    V    +   P   R   T  
Sbjct: 75  LPLG-EVEMKIDASARQLHARLHSVGHLLGLAGEQLGWQPV---KAHHWPGEGRITFTSR 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 +  ++   V    AQ+LP      +                      +  V + 
Sbjct: 131 NSAALPDASALLALVKAWQAQDLPRQVTFAD---------------------GMRKVGFG 169

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +   +    CGGTHV+   E+  + I S+  ++ G
Sbjct: 170 ELPAY---PCGGTHVARLAELGDIVI-SQIKMKKG 200


>gi|330829614|ref|YP_004392566.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
 gi|328804750|gb|AEB49949.1| Threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Aeromonas
           veronii B565]
          Length = 642

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L    + +  I  ++   L  + HS  HLL HA+  +        G  I  +G  
Sbjct: 45  VDACELIEADAALAIITAKDEEGLDILRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +DV   + +T  +L ++E+ +  ++A++  V+ + ++ ++A     A   G  Y   +  
Sbjct: 104 YDVDLDRTLTDEDLAALEERMLALVAKDYDVIKKKVSWQEARDVFEAR--GESYKVEILD 161

Query: 679 VSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAI 726
            ++  +D  G++       +C G HV +        ++  S       S    ++RI   
Sbjct: 162 QNIARDDQPGLYHHEEYIDMCRGPHVPNMRHCHHFKLLKMSGAYWRGDSNNKMLQRIYG- 220

Query: 727 TGQRARSHLMGQDEKLKSLAS 747
           T    +  L    ++L+  A 
Sbjct: 221 TAWADKKQLKAYLQRLEEAAK 241


>gi|254561516|ref|YP_003068611.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
 gi|254268794|emb|CAX24755.1| threonine tRNA synthetase [Methylobacterium extorquens DM4]
          Length = 675

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  +
Sbjct: 66  RALELIRHDCAHVLAEAVQALWPGTQVTIGPVI-ENGFYYDFAKDEPFTPEDFPKIEAKM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II+++ P    +  R+D  A  A    G  Y   +       ED  ++       LC 
Sbjct: 125 REIISRDAPFTKEVWKRDDVKALFAEK--GESYKVELVDAIPPGEDLKIYRQGEWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG++     ++    +     R
Sbjct: 183 GPHMTSTGKVGAAFKLMK---VAGAYWR 207


>gi|218530550|ref|YP_002421366.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
 gi|218522853|gb|ACK83438.1| threonyl-tRNA synthetase [Methylobacterium chloromethanicum CM4]
          Length = 675

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  +
Sbjct: 66  RALELIRHDCAHVLAEAVQALWPGTQVTIGPVI-ENGFYYDFAKDEPFTPEDFPKIEAKM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II+++ P    +  R+D  A  A    G  Y   +       ED  ++       LC 
Sbjct: 125 REIISRDAPFTKEVWKRDDVKALFAEK--GESYKVELVDAIPPGEDLKIYRQGEWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG++     ++    +     R
Sbjct: 183 GPHMTSTGKVGAAFKLMK---VAGAYWR 207


>gi|304397616|ref|ZP_07379493.1| threonyl-tRNA synthetase [Pantoea sp. aB]
 gi|304354788|gb|EFM19158.1| threonyl-tRNA synthetase [Pantoea sp. aB]
          Length = 642

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 17/194 (8%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           TE + V  I  ++   L I  HS  HLL HA+  +        G  I  +G  +DV   +
Sbjct: 52  TEDAAVAIITAKDEAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDR 110

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T  ++  +E  ++ +   N  VV + ++ ++A    AA   G  Y   +   ++ ++D
Sbjct: 111 TLTQEDIDLLEKRMHQLAETNYDVVKKKVSWQEARDVFAAR--GEIYKTTILDENISHDD 168

Query: 686 -GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARS 733
             G++       +C G HV +        +   S       S    ++RI   T    + 
Sbjct: 169 KPGLYHHEEYVDMCRGPHVPNMRFCHHFKLQKISGAYWRGDSSNKMLQRIYG-TAWADKK 227

Query: 734 HLMGQDEKLKSLAS 747
            L    ++L+  A 
Sbjct: 228 QLAAYLQRLEEAAK 241


>gi|240138908|ref|YP_002963383.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
 gi|240008880|gb|ACS40106.1| threonine tRNA synthetase [Methylobacterium extorquens AM1]
          Length = 675

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D    +P T  +   IE  +
Sbjct: 66  RALELIRHDCAHVLAEAVQALWPGTQVTIGPVI-ENGFYYDFAKDEPFTPEDFPKIEAKM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II+++ P    +  R+D  A  A    G  Y   +       ED  ++       LC 
Sbjct: 125 REIISRDAPFTKEVWKRDDVKALFAEK--GESYKVELVDAIPPGEDLKIYRQGEWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG++     ++    +     R
Sbjct: 183 GPHMTSTGKVGAAFKLMK---VAGAYWR 207


>gi|238791701|ref|ZP_04635338.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
 gi|238728805|gb|EEQ20322.1| Threonyl-tRNA synthetase [Yersinia intermedia ATCC 29909]
          Length = 642

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISHDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWGDKKQLNAYLQRLEEAAK 241


>gi|119476522|ref|ZP_01616873.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
 gi|119450386|gb|EAW31621.1| threonyl-tRNA synthetase [marine gamma proteobacterium HTCC2143]
          Length = 645

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 73/197 (37%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D       ++ +L+ IE  + +I  
Sbjct: 71  IRHSTAHLMAMAVQELFPGVQVTIGPVI-EDGYFYDFATGHSFSTEDLQKIEKRMLEITK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            +LP+   +M R  AI       +G  Y  ++       ++  V+       LC G HV 
Sbjct: 130 DDLPIERMVMTRTQAIKEF--REMGENYKVQIIEDLPAGDEISVYRQGPWRDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    ++    +     R                +E L+ +      ++ ++   +
Sbjct: 188 STGKLKAFKLMK---VAGAYWR------------GDSNNEMLQRVYGTAWSNKKDLKAYL 232

Query: 761 EEIWEEYRKLQLIHAKR 777
             + E  ++      K+
Sbjct: 233 HRLEEAEKRDHRKLGKK 249


>gi|119472992|ref|ZP_01614827.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
 gi|119444612|gb|EAW25923.1| threonyl-tRNA synthetase [Alteromonadales bacterium TW-7]
          Length = 586

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 75/200 (37%), Gaps = 24/200 (12%)

Query: 568 EMSLVLT--IDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPD 615
              +     I+   R ++           I HS  HL+ HA+  +        G  I  +
Sbjct: 42  GDRVDACDLINDDARLEIITAKDEDGLEIIRHSCAHLIGHAVKQLYPEAKMAIGPTID-N 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D+     ++  +L +IE  +  +   N  VV + ++ ++A  +  A   G  Y   
Sbjct: 101 GFYYDIDLDHSLSQDDLDAIEKRMLQLAKTNYDVVKKTVSWQEARDTFEAR--GETYKME 158

Query: 676 VRVVSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730
           +   ++  +D  G++       +C G HV +        I+    +     R ++     
Sbjct: 159 ILDENIAKDDRPGLYHHEEYVDMCRGPHVPNMKFCQNFKIMK---VAGAYWRGDSENKML 215

Query: 731 ARSHLMGQDEKLKSLASFLK 750
            R +     +K K L ++LK
Sbjct: 216 QRIYGTAWGDK-KQLKAYLK 234


>gi|325661884|ref|ZP_08150505.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471862|gb|EGC75079.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 643

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 22/200 (11%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             +  H+ +H+L  A+  +        G  I  DG  +D     P T+ +L++IE  +  
Sbjct: 67  AHAFRHTTSHILAQAVKRLFPDTKLAIGPAID-DGFYYDFDREVPFTTEDLETIEKEMKK 125

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+ ++L +    + RE+AIA          Y   +     E      +       LC G 
Sbjct: 126 IVKEDLKIEQFTLPREEAIA--LMKEKEEPYKVELIEDLPEDAVISFYKQGEFTDLCAGP 183

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ ST  +    + S             + G  A      +++ L  +       + ++ 
Sbjct: 184 HLLSTKSVKAFKLTS-------------LAG--AYWRGSEKNKMLTRIYGTSFTKKADLD 228

Query: 758 GRVEEIWEEYRKLQLIHAKR 777
             + +I E  ++      K 
Sbjct: 229 EYLAKIEEAKKRDHRKLGKE 248


>gi|186685902|ref|YP_001869098.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
 gi|186468354|gb|ACC84155.1| threonyl-tRNA synthetase [Nostoc punctiforme PCC 73102]
          Length = 611

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 24/198 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P +  +LK+I+  +  II 
Sbjct: 32  IRHTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFSENDLKAIKKEMAKIIN 90

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVS 700
           + LPV+   ++RE+A        +   Y   +        +     G     LC G H+ 
Sbjct: 91  RKLPVIREEVSREEAARR--IQEIKEPYKLEILADIKNEPITIYHLGNEWWDLCAGPHLE 148

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           +  E+     +   S+     R     G   ++ L                S   +    
Sbjct: 149 NISELNP-KAIELESVAGAYWR-----GDETKAQLQRIYATAWE-------SPEQLAEYK 195

Query: 759 --RVEEIWEEYRKLQLIH 774
             + E +  ++RKL    
Sbjct: 196 RRKEEALRRDHRKLGKEL 213


>gi|238765296|ref|ZP_04626223.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
 gi|238696469|gb|EEP89259.1| Threonyl-tRNA synthetase [Yersinia kristensenii ATCC 33638]
          Length = 642

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+ G L    + +  I  ++   L  + HS  HLL HA+  +        G  I  +G  
Sbjct: 45  VDAGDLIESDAQLAIITAKDAEGLEILRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +DV   + +T  +L  +E  ++++  ++  V+ + ++ ++A  + AA   G  Y   +  
Sbjct: 104 YDVDIDRTLTQEDLDLLEKRMHELADKDYDVIKKKVSWQEARDTFAAR--GEDYKVAILD 161

Query: 679 VSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAI 726
            ++  +D  G++       +C G HV +        +   S       S    ++RI   
Sbjct: 162 ENISRDDRPGLYHHEEYVDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG- 220

Query: 727 TGQRARSHLMGQDEKLKSLAS 747
           T    +  L    ++L+  A 
Sbjct: 221 TAWGDKKQLNAYLQRLEEAAK 241


>gi|257124962|ref|YP_003163076.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
 gi|257048901|gb|ACV38085.1| threonyl-tRNA synthetase [Leptotrichia buccalis C-1013-b]
          Length = 636

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  +     G  I  +G  +D    KP T  +L  IE  +  I+ 
Sbjct: 71  IRHSAAHIMAQAVQRLFPNTKVTIGPVI-ENGFFYDFDPEKPFTEEDLAKIEGEMAKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N       M  E+A    A    G  Y     +  +  +   ++       LC GTH+ 
Sbjct: 130 ENYEFKRSEMTAEEAKKFFAEK--GETYKVE-IIEDLGADKVSIYQQGEFIDLCRGTHIP 186

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           STG +    ++S +       S    ++RI      T +    +L   +E  K 
Sbjct: 187 STGYLKAFKLMSTAGAYWRGDSNNKMLQRIYGVAFATKKELDDYLTMMEEAEKR 240


>gi|331085681|ref|ZP_08334764.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406604|gb|EGG86109.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 643

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 71/200 (35%), Gaps = 22/200 (11%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             +  H+ +H+L  A+  +        G  I  DG  +D     P T+ +L++IE  +  
Sbjct: 67  AHAFRHTTSHILAQAVKRLFPDTKLAIGPAID-DGFYYDFDREVPFTTEDLETIEKEMKK 125

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+ ++L +    + RE+AIA          Y   +     E      +       LC G 
Sbjct: 126 IVKEDLKIEQFTLPREEAIA--LMKEKEEPYKVELIEDLPEDAVISFYKQGEFTDLCAGP 183

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ ST  +    + S             + G  A      +++ L  +       + ++ 
Sbjct: 184 HLLSTKSVKAFKLTS-------------LAG--AYWRGSEKNKMLTRIYGTSFTKKADLD 228

Query: 758 GRVEEIWEEYRKLQLIHAKR 777
             + +I E  ++      K 
Sbjct: 229 EYLAKIEEAKKRDHRKLGKE 248


>gi|325569916|ref|ZP_08145910.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325157039|gb|EGC69207.1| threonine--tRNA ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 646

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 11/180 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      I     +  + ++ +           + HS  HL+  A+  +  S   
Sbjct: 34  KKALAGKVNGQLIDLSRPIEEDATIEIVTPDHEDALGLLRHSTAHLMAQAMRRLYPSIHF 93

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I             P+T+ +L +IE  +  II +NLP+  R++ +E+A+A  A  
Sbjct: 94  GVGPAIDSGFYYDTDNGENPVTAEDLPAIEAEMMKIIKENLPIERRVLTKEEALALFA-- 151

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                Y   +     + E    +       LC G HV STG I +  ++S   +     R
Sbjct: 152 --EDPYKVELITELPDDETITAYQQGEFVDLCRGPHVPSTGRIQVYKLLS---VAGAYWR 206


>gi|15837338|ref|NP_298026.1| threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
 gi|22654146|sp|Q9PFE2|SYT_XYLFA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9105624|gb|AAF83546.1|AE003915_11 threonyl-tRNA synthetase [Xylella fastidiosa 9a5c]
          Length = 635

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 23/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVI-ADGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSA----LCGGTHV 699
           Q+  VV  I  R D +        G  Y  R+      E    G++       +C G HV
Sbjct: 131 QDYHVVKHITARHDVVRLFKER--GEDYKLRLIEEMGPEVTAMGIYHHQEYVDMCRGPHV 188

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +     I     R               ++E+L+ +       +  +   
Sbjct: 189 PNTRFLKAFKLT---RISGAYWR------------GDTKNEQLQRIYGTAWADKKQLEAH 233

Query: 760 VEEIWEEYRKLQLIHAK 776
           ++ + +  ++      K
Sbjct: 234 MQRLQDAEKRDHRKIGK 250


>gi|94499191|ref|ZP_01305729.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
 gi|94428823|gb|EAT13795.1| threonyl-tRNA synthetase [Oceanobacter sp. RED65]
          Length = 638

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV    PI   ELK +E  +N++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDADFPINEEELKQLEKRMNELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            + PVV  +++ + A  +      G  Y   +   ++  +             +C G HV
Sbjct: 130 TSYPVVKEVVSWQTARDTFEKR--GESYKMEILDENIPKDSTPALYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++    +     R
Sbjct: 188 PNMKFCQNFKLMK---VAGAYWR 207


>gi|15895629|ref|NP_348978.1| threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|22654130|sp|Q97GK4|SYT_CLOAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15025373|gb|AAK80318.1|AE007736_8 Threonyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824]
 gi|325509777|gb|ADZ21413.1| threonyl-tRNA synthetase [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 22/198 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D+      T      IE  +N II
Sbjct: 70  TLRHTASHILAQAIKRLYPEAKLAIGPAID-SGFYYDIDADFSFTEEMFAKIEKEMNKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NL +    + RE AI           Y   +     E      +       LC G HV
Sbjct: 129 KENLKLERFELPREKAIEY--MEEKKEPYKVELIKDLPEDAVISFYKQGEFVDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST     + ++   S+     R               +++ L+ +       + ++   
Sbjct: 187 ESTA---KVKVIKLMSVAGAYWR------------GNEKNKMLQRIYGTAFTKKADLDDY 231

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  + E  ++      K 
Sbjct: 232 INMLEEAKKRDHRKIGKE 249


>gi|328543265|ref|YP_004303374.1| Threonyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
 gi|326413011|gb|ADZ70074.1| Threonyl-tRNA synthetase [Polymorphum gilvum SL003B-26A1]
          Length = 654

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +      R    I H A H++  A+  +        G  I  +G  +D   
Sbjct: 50  PIARDARIEIVTRDDPRALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFKR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L  IE  + +IIA+       + +RE+A         G  Y   +     E 
Sbjct: 109 DEPFTPEDLPVIEKKMREIIARGAAFTKEVWSREEAKRHFLTK--GETYKVELVDAIPED 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           ++  ++       LC G H++ST +I     ++    +     R
Sbjct: 167 QELKIYKQGTWLDLCRGPHMTSTRQIGDAFKLMK---VAGAYWR 207


>gi|294055076|ref|YP_003548734.1| threonyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
 gi|293614409|gb|ADE54564.1| threonyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221]
          Length = 612

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 24/203 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS +H+L  A+  +        G   T +G  +D+   K + +++L++IE  +  II
Sbjct: 9   ELRHSCSHVLAAAVLRLHPDTQLDIGPP-TDNGFYYDIDLDKKLDASDLEAIEVEMKQII 67

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
            +N        +RE+A+A       G  +Y         E E    + +     LC G+H
Sbjct: 68  KENQKFTRIECSREEAVAK--IKEFGQERYKLGRLDDIPEGEQVSFYQNGEFIDLCAGSH 125

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+ T +I    ++S             I G  A       +++L+ +      S+  +  
Sbjct: 126 VNYTKKIKAFKLLS-------------IAG--AYHRGDENNKQLQRIYGTAFPSKDELAD 170

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL 781
            ++++ E+ +        ++L+L
Sbjct: 171 YLDKL-EQAKARDHRKLGKELKL 192


>gi|302671729|ref|YP_003831689.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
 gi|302396202|gb|ADL35107.1| threonyl-tRNA synthetase ThrZ [Butyrivibrio proteoclasticus B316]
          Length = 634

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 21/202 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H+L  A+  + G  V         DG  +D    K +T  + K+IED + +II 
Sbjct: 17  YRHSMAHVLAKAVIELYGKEVQYAIGPQIDDGCYYDFVLPKAVTQDDFKTIEDKMREIIK 76

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +      + +++ +A+         T+  ND      +     G     LC G HV ++ 
Sbjct: 77  RREDWTRKEVSKSEALEMFKDQKFKTELINDLPEDEVITVYYTGDDYVDLCRGPHVDNSQ 136

Query: 704 EIMLLY--IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           E+M +   I S S                A      + ++L  +  +   S+  +   ++
Sbjct: 137 ELMNVSYQIKSVSG---------------AYWRGDEKRDQLSRIYLYAFPSKDELKHHIK 181

Query: 762 EIWEEYRKLQLIHAKRKLQLNV 783
            I E    L+  H K   +L++
Sbjct: 182 MIQE---ALERDHKKIGAELDL 200


>gi|329849735|ref|ZP_08264581.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
 gi|328841646|gb|EGF91216.1| threonyl-tRNA synthetase [Asticcacaulis biprosthecum C19]
          Length = 640

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  I  DG  +D    +P ++ +   IE  + +I+ 
Sbjct: 68  IRHDTAHILAEAVQELFPGTQVTIGPAID-DGFYYDFARDEPFSTDDFPKIEAKMREIVD 126

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-----SSALCGGTHV 699
           ++  +   + +R  AIA   +  +G KY   +     E ED  V+        LC G H+
Sbjct: 127 RDEKIRREVWDRNHAIAHFES--IGEKYKAEIIRDLPESEDISVYFHGDAWKDLCLGPHL 184

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            S+  I        + +     R                + +L+ +      S+ ++   
Sbjct: 185 PSSKFIG--KAFKLTKLAGAYWR------------GDHNNAQLQRIYGTAWSSEADLEAY 230

Query: 760 VEEIWEEYRK 769
           ++ I E  ++
Sbjct: 231 IQRIEEAEKR 240


>gi|153938058|ref|YP_001392415.1| threonyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|166223335|sp|A7GI05|SYT_CLOBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152933954|gb|ABS39452.1| threonine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320405|gb|ADG00783.1| threonine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 635

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 72/202 (35%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+  H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGAHILAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAI--NLMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A      +++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGDEKNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMIEEAKKRDHRKLGKELDL 252


>gi|297617667|ref|YP_003702826.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145504|gb|ADI02261.1| threonyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R      HS+ H++  A+  +        G  I   G  +D    +P T  +   I
Sbjct: 64  DEDGRE--VYRHSSAHVMAQAVKRLFPGTRLAIGPAID-KGFYYDFDPEQPFTPEDFDRI 120

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  +  II+ + P+V + ++RE+A+     + LG  Y   +     E E   V+      
Sbjct: 121 EQEMQSIISADYPIVRKEISREEALELF--SGLGETYKVELIEGLAEGETISVYQQGEFI 178

Query: 692 ALCGGTHVSSTGEIMLLYIVSESS 715
            LC G H+ STG+I    ++S + 
Sbjct: 179 DLCAGPHLMSTGKIKAFKLMSLAG 202


>gi|306841798|ref|ZP_07474483.1| threonyl-tRNA synthetase [Brucella sp. BO2]
 gi|306288128|gb|EFM59518.1| threonyl-tRNA synthetase [Brucella sp. BO2]
          Length = 661

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 39  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 98

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 99  TIGPVI-ENGFYYDFARNEPFTLDDLPMIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 157

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 158 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 212

Query: 722 RIEA 725
           R +A
Sbjct: 213 RGDA 216


>gi|317047868|ref|YP_004115516.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
 gi|316949485|gb|ADU68960.1| threonyl-tRNA synthetase [Pantoea sp. At-9b]
          Length = 642

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  +++ +E  ++ +  
Sbjct: 71  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDLDHTLTQEDIEQLEKRMHQLAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++ ++A    AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TNYDVIKKKVSWQEARDVFAAR--GESYKTTILDENISHDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKISGAYWRGDSNNKMLQRIYG-TAWADKKQLAAYLQRLEEAAK 241


>gi|218295928|ref|ZP_03496708.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
 gi|218243666|gb|EED10194.1| threonyl-tRNA synthetase [Thermus aquaticus Y51MC23]
          Length = 660

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 34/226 (15%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST------I 600
           ++    I           L    ++ +  +     QL   H+  H+L  A+         
Sbjct: 32  KRAVGAIVNGEVYDLLKPLPPGATVRILTEKDPEYQLLFRHTLAHVLAQAVKEFFREKGY 91

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
               V      +   G  +D+   +P++  +L  IE+ + +I+ ++LP+   ++ RE A+
Sbjct: 92  DPESVRLGVGPVIEKGFYYDIDAPEPLSDEDLPQIEEKMREILRRDLPLKRYVLPREAAL 151

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--------ALCGGTHVSSTGEIML-LYIV 711
           A          Y   + +   E E+   +           LC G HV STG I     + 
Sbjct: 152 ARYQGK---DPYKTELILDLPEGEEISFYQQGDEAFGFTDLCRGPHVPSTGRIPPHFKLT 208

Query: 712 SESSIRAGIRR-------------IEAITGQRARSHLMGQDEKLKS 744
               +     R             +   T +  + +L   +E  K 
Sbjct: 209 ---HVAGAYWRGDERRPMLQRVYGVAFRTAEELKEYLWQLEEAKKR 251


>gi|90417791|ref|ZP_01225703.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337463|gb|EAS51114.1| threonyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1]
          Length = 659

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H++  A+  +        G  I  +G  +D     P T  +L  IE  +
Sbjct: 70  RALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFFYDFARDTPFTPDDLPVIEKKM 128

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II +N P    + +R+ A A    A  G  Y   +     E +D  ++S      LC 
Sbjct: 129 VEIIRRNAPFTKEVWSRDKAKA--VFAEKGEAYKVELVDAIPEGQDLKIYSQGDWFDLCR 186

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H+++TG+I     ++    +     R
Sbjct: 187 GPHMAATGQIGDAFKLMK---VAGAYWR 211


>gi|315924324|ref|ZP_07920547.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622395|gb|EFV02353.1| threonine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 644

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSA+H++  A+  +        G  +  +G  +DV     IT  +   IE  +  I+
Sbjct: 69  AFWHSASHVMGQAIKRVWPDAQLTIGPAVD-NGFYYDVDLEHAITPDDYPIIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHV 699
             + P+   + +RE+A+A   A      Y   +     E E    +     + LC G H+
Sbjct: 128 KADYPIEYTVKSREEALA--WAEKEHETYKTELIEALPEDETISFYGQGEWADLCAGPHI 185

Query: 700 SSTGEIMLLYIVSESS 715
            STG+I    I+S + 
Sbjct: 186 RSTGQIKAFKIMSLAG 201


>gi|270261557|ref|ZP_06189830.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
 gi|270045041|gb|EFA18132.1| threonyl-tRNA synthetase [Serratia odorifera 4Rx13]
          Length = 642

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  MRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GENYKVAILDENISHDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLNAYLQRLEEAAK 241


>gi|227550587|ref|ZP_03980636.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257888612|ref|ZP_05668265.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257897010|ref|ZP_05676663.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257898951|ref|ZP_05678604.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|293378702|ref|ZP_06624860.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
 gi|293571021|ref|ZP_06682064.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|227180295|gb|EEI61267.1| threonine--tRNA ligase [Enterococcus faecium TX1330]
 gi|257824666|gb|EEV51598.1| threonyl-tRNA synthetase [Enterococcus faecium 1,141,733]
 gi|257833575|gb|EEV59996.1| threonyl-tRNA synthetase [Enterococcus faecium Com12]
 gi|257836863|gb|EEV61937.1| threonyl-tRNA synthetase [Enterococcus faecium Com15]
 gi|291608947|gb|EFF38226.1| threonyl-tRNA synthetase [Enterococcus faecium E980]
 gi|292642630|gb|EFF60782.1| threonine--tRNA ligase [Enterococcus faecium PC4.1]
          Length = 647

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 3/176 (1%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      I     +  + S+ +           + HSA HL+  A+  +  +   
Sbjct: 33  KKALAGKVNGKLIDLTRPIEEDASIEIVTPDHEDALGLVRHSAAHLMAQAMRRLYPNIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              +T+ +L +IE  +  I+ +NLP+  R++++++A+   A+ 
Sbjct: 93  GVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +    +    V           LC G HV STG I +  ++S   +     R
Sbjct: 153 PYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQVFKLLS---VAGAYWR 205


>gi|149182849|ref|ZP_01861310.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148849464|gb|EDL63653.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 643

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 23/227 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G    + I  +  +  + ++ +           + HS  HL+  A+  +      
Sbjct: 36  KKALAGKVNGNLIDLKTPITEDGAIEIVTPDHEDALEVLRHSTAHLMAQAIKRLYPDVKL 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I   G  +D+     IT  +L  IE  +  I   NL V+ + ++R++A       
Sbjct: 96  GIGPVID-GGFYYDIDTEHSITPEDLPKIEKEMKKIAESNLEVIRKEVSRDEAQKMYE-- 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            +  +Y   +     E E   ++       LC G HV STG+I    ++S   I     R
Sbjct: 153 EVSDEYKIELLEAIPEGEQVSIYEQGDFFDLCRGIHVPSTGKIKEFKLLS---IAGAYWR 209

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                           ++ L+ +       + ++   +  + EE ++
Sbjct: 210 ------------GNSDNKMLQRIYGTAFFKKEDLKEHL-RLLEEAKE 243


>gi|154245583|ref|YP_001416541.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
 gi|154159668|gb|ABS66884.1| threonyl-tRNA synthetase [Xanthobacter autotrophicus Py2]
          Length = 660

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 11/166 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              +  +  L +      R    I H  +H++  A+  +        G  I  +G  +D 
Sbjct: 48  SEPITRDAKLEIVTRDDPRALELIRHDCSHVMAEAVQELWPGTQVTIGPVI-ENGFYYDF 106

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
             + P T+ +L  IE+ + +IIA++ P    +  R++A    AA   G  Y   +     
Sbjct: 107 ARNAPFTTEDLPVIENKMREIIARDRPFTKEVWTRDEAKRVFAAK--GEGYKVELVDAIP 164

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
             +D  ++       LC G H+ STG+I     ++    +     R
Sbjct: 165 SDQDVKIYKQGEWFDLCRGPHMPSTGKIGTAFKLMK---VAGAYWR 207


>gi|291486342|dbj|BAI87417.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195]
          Length = 638

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K A G      +     L  +  L ++T+D Q   Q+   H++ H+L  A+  + G  V
Sbjct: 36  KKAAAGQVNGKLVDLSFKLEEDAELSIVTLDSQEGLQVLR-HTSAHVLAQAVKRLYGE-V 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA- 664
           S     +  DG  +D+   K + S +L++IE  + +II +NL +    ++ E+A    A 
Sbjct: 94  SLGVGPVIEDGFYYDMKLGKSLASGDLEAIEKEMKNIINENLEIKRIEVSYEEADELFAQ 153

Query: 665 --AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               L      D  R   +     G     LC G H+ STG I    +   S 
Sbjct: 154 KDERLKLEILKDIPRGEDITLYQQGEFVD-LCRGPHLPSTGMIKAFKLTRVSG 205


>gi|92113922|ref|YP_573850.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
 gi|123387452|sp|Q1QWK7|SYT_CHRSD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91797012|gb|ABE59151.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Chromohalobacter salexigens DSM 3043]
          Length = 632

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 26/236 (11%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V  K +G+ V  A V    +  +  + +           I HS  HL+ HA+  +     
Sbjct: 36  VAGKIDGVPVDTADV----IEHDAEVSILTPRDQEGLEIIRHSCAHLVGHAVKQLYPDAK 91

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  DG  +D+   + ++  +L++IE  +  +I     V+   + +E A+A+   
Sbjct: 92  MAIGPVID-DGFYYDIDFGQSVSPEDLEAIEKRMKVLIDHEYEVIREYVTKEQALATFID 150

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                 Y   +     + E   ++       +C G HV +T  +    +     +     
Sbjct: 151 R--DEPYKQEIVEGIADGETVRLYHHEEYIDMCRGPHVPNTRHLKAFKLTK---LAGAYW 205

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           R +A      R +     +K K+L ++LK            + E  ++     A++
Sbjct: 206 RGDANKPMLTRIYGTAWADK-KALKTYLK-----------RLEEAEKRDHRKLARK 249


>gi|332180572|gb|AEE16260.1| threonyl-tRNA synthetase [Treponema brennaborense DSM 12168]
          Length = 583

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            Q  R   I HS +H++  A+ T+        G  I  +G  +D   ++PIT  +L +IE
Sbjct: 4   EQKERLAMIRHSTSHVMAQAVLTLFPGSKVAIGPSID-NGFYYDFELTRPITQEDLAAIE 62

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---- 692
             +  I++ N     R ++R +A+   A       Y   +       E   V++ A    
Sbjct: 63  KEMRKIVSGNHEFTRREVSRAEALKMFADQ----PYKVELINDLPADEPISVYTQAGFTD 118

Query: 693 LCGGTHVSSTGEIML--LYIVSESS 715
           LC G HV++T EI      ++  + 
Sbjct: 119 LCRGPHVANTKEINAQSFKLMKTAG 143


>gi|255526047|ref|ZP_05392970.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|255510233|gb|EET86550.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 638

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 8/145 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ + +   H+ +H+L  A+  +        G  I   G  +D       T   
Sbjct: 59  ILTFDDEDGKWILR-HTGSHILAQAVKKVYPEVKLAIGPAIDT-GFYYDFDAEFSFTPEM 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  +N II +NL +    + RE+AI           Y   +     E      +  
Sbjct: 117 LEKIEVEMNKIIKENLKLERFELPREEAIK--LMQEKKECYKVELIKDLPEDAVISFYKQ 174

Query: 692 ----ALCGGTHVSSTGEIMLLYIVS 712
                LC G HV STG++  + ++S
Sbjct: 175 GDFVDLCAGPHVPSTGKVKAVKLLS 199


>gi|226324523|ref|ZP_03800041.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
 gi|225206971|gb|EEG89325.1| hypothetical protein COPCOM_02307 [Coprococcus comes ATCC 27758]
          Length = 643

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H++  A+  +        G  I  DG  +D+    P+ + +L+ IE  +  I+
Sbjct: 69  AFRHTTSHIMAQAIKRLYPDTKLAIGPSI-EDGFYYDIDRETPLVAEDLEKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++LP+    M R +AIA          Y   +     E      +S      LC G H+
Sbjct: 128 KEDLPIKQYTMPRAEAIAYF--KEKDEPYKVELIEDLPEDSVISFYSQGEFTDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESS 715
            ST  +    + S + 
Sbjct: 186 MSTKPVKAFKLTSLAG 201


>gi|146311380|ref|YP_001176454.1| threonyl-tRNA synthetase [Enterobacter sp. 638]
 gi|166987323|sp|A4W9M3|SYT_ENT38 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145318256|gb|ABP60403.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Enterobacter
           sp. 638]
          Length = 642

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TNYDVIKKNVSWHEARETFVKR--GENYKVSILDENISHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++    I     R
Sbjct: 188 PNMRFCHHFKLMK---IAGAYWR 207


>gi|69245748|ref|ZP_00603614.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257880251|ref|ZP_05659904.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257883051|ref|ZP_05662704.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257891365|ref|ZP_05671018.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257893638|ref|ZP_05673291.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|258614441|ref|ZP_05712211.1| threonyl-tRNA synthetase [Enterococcus faecium DO]
 gi|260560451|ref|ZP_05832625.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|293563269|ref|ZP_06677719.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|294621403|ref|ZP_06700575.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|314939207|ref|ZP_07846461.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|314942550|ref|ZP_07849386.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|314948402|ref|ZP_07851791.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
 gi|314951256|ref|ZP_07854311.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|314991679|ref|ZP_07857149.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|314996805|ref|ZP_07861818.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|68195641|gb|EAN10081.1| Threonyl-tRNA synthetase, class IIa [Enterococcus faecium DO]
 gi|257814479|gb|EEV43237.1| threonyl-tRNA synthetase [Enterococcus faecium 1,230,933]
 gi|257818709|gb|EEV46037.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,502]
 gi|257827725|gb|EEV54351.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,410]
 gi|257830017|gb|EEV56624.1| threonyl-tRNA synthetase [Enterococcus faecium 1,231,408]
 gi|260073453|gb|EEW61781.1| threonyl-tRNA synthetase [Enterococcus faecium C68]
 gi|291599050|gb|EFF30095.1| threonyl-tRNA synthetase [Enterococcus faecium U0317]
 gi|291604721|gb|EFF34205.1| threonyl-tRNA synthetase [Enterococcus faecium E1162]
 gi|313589100|gb|EFR67945.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a01]
 gi|313593770|gb|EFR72615.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133B]
 gi|313596608|gb|EFR75453.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133A]
 gi|313598686|gb|EFR77531.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133C]
 gi|313641458|gb|EFS06038.1| threonyl-tRNA synthetase [Enterococcus faecium TX0133a04]
 gi|313645194|gb|EFS09774.1| threonyl-tRNA synthetase [Enterococcus faecium TX0082]
          Length = 646

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 3/176 (1%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      +     +  + S+ +           + HSA HL+  A+  +  +   
Sbjct: 33  KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGLVRHSAAHLMAQAMRRLYPNIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              +T+ +L +IE  +  I+ +NLP+  R++++++A+   A+ 
Sbjct: 93  GVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +    +    V           LC G HV STG I +  ++S   +     R
Sbjct: 153 PYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQVFKLLS---VAGAYWR 205


>gi|270262643|ref|ZP_06190914.1| threonyl/alanyl tRNA synthetase SAD [Serratia odorifera 4Rx13]
 gi|270043327|gb|EFA16420.1| threonyl/alanyl tRNA synthetase SAD [Serratia odorifera 4Rx13]
          Length = 209

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 37/214 (17%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V      V    T F+ + GGQ  DTG        + +  V ++ + +    A      +
Sbjct: 24  VEDGGYAVELSATLFHPQGGGQQADTGAL----GAIPVLRVAQQGDKVLHFTAE----PV 75

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                +   +D + RR  +  HSA HL+           V    +   P   R       
Sbjct: 76  SAG-PVNQQVDGERRRLHARWHSAGHLIGWVGENHGWQPV---KAHHWPGEGRITFAPGA 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
              + E  +++  +  +IA NLP                         D   V  V + D
Sbjct: 132 DPQTLEQGALQAELQRLIAANLPRRQL---------------------DVDGVRQVGFGD 170

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
             V+    CGGTHV+S  E+  + I +   ++ G
Sbjct: 171 LPVYG---CGGTHVASLSELGAVTITAV-KMKKG 200


>gi|307131177|ref|YP_003883193.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
 gi|306528706|gb|ADM98636.1| threonyl-tRNA synthetase [Dickeya dadantii 3937]
          Length = 642

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++ +
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDLDRTLTQEDLDLLEKRMHELAS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GESYKVAILDENISHDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLSAYLQRLEEAAK 241


>gi|237729326|ref|ZP_04559807.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909055|gb|EEH94973.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 210

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 79/218 (36%), Gaps = 41/218 (18%)

Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563
            A    +  VV D+T F+ + GGQ  D G    D  R++       A G  V H +V+  
Sbjct: 22  SAEPDGRYAVVLDRTLFHPQGGGQPADAGWI--DDERVE----TVLARGDDVVHIVVK-- 73

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ--NGSCITPDGLRFDV 621
            L   + + L +D   R+  +  HSA HL+  A     G+        +   P+  R   
Sbjct: 74  PLLPGI-VNLRVDAALRQLHARLHSAGHLIGLA-----GTAFGWLPVKAHHWPNEGRITF 127

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
              +  T  +  S+++ +N   A NL       +                      +  V
Sbjct: 128 AAGENGTLPDTLSLQEKINAWQADNLARQVTFTD---------------------GLRQV 166

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            +     +    CGGTHV+   EI  + I     ++ G
Sbjct: 167 GFGHLLAY---PCGGTHVAHLSEIGPVTITQV-KMKKG 200


>gi|145505543|ref|XP_001438738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124405910|emb|CAK71341.1| unnamed protein product [Paramecium tetraurelia]
          Length = 281

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 18/221 (8%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT----DVQKKAEGIFVHHAIVERGIL- 565
           ++++  +  F+ + GGQ  D G    +   + +     D  K+   + + H      +L 
Sbjct: 57  IQLLLKENIFHPQGGGQPDDEGQIKINDNLINVMSLQNDKAKQQVLLNLQHQQQLFDLLI 116

Query: 566 ---RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
              +   +++  ++ Q RR  +  HSA H +   +  + G   +       PDG   + T
Sbjct: 117 EAKQQNQAVIQIVNEQQRRNYARLHSAGHFIDMVVKKL-GLKWTGAKGYHFPDGAYVEYT 175

Query: 623 HSKPITSAEL-----KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +      ++     ++ +  +N+    +   V  +   + +   G       K    VR
Sbjct: 176 GTLEGKPEDIQVSIQQTCDQLLNETEENDSKQVEFLNEEQLSQRLGGEVPHYFKGAQNVR 235

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
            + +   D G      CGGTHV+   E++ + IV       
Sbjct: 236 YIKLCKYDDG----CPCGGTHVNHVKELIKVNIVKIQKKGK 272


>gi|71898248|ref|ZP_00680422.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
 gi|71731987|gb|EAO34044.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Ann-1]
          Length = 635

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVI-ADGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSA----LCGGTHV 699
           Q+  VV  I  R D +        G  Y  R+      E    G++       +C G HV
Sbjct: 131 QDYDVVKHITARHDVVRLFKER--GEDYKLRLIEDMGPEVTAMGIYHHQEYVDMCRGPHV 188

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +     I     R               ++E+L+ +       +  +   
Sbjct: 189 PNTRFLKAFRLT---RISGAYWR------------GNTKNEQLQRIYGTAWADKKQLEAY 233

Query: 760 VEEIWEEYRKLQLIHAKRK 778
           ++ + +  ++      K +
Sbjct: 234 MQRLQDAEKRDHRKIGKAQ 252


>gi|262067494|ref|ZP_06027106.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
 gi|291378856|gb|EFE86374.1| threonine--tRNA ligase [Fusobacterium periodonticum ATCC 33693]
          Length = 637

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 24/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          +    +L  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 31  KKSVGAKIDGKNVDMSYVLDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPETK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 90  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKRIVKENIKLEKYVLPRDEAIDYF-R 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   V     + E    +       LC GTHV STG +    +    ++     
Sbjct: 148 DVDKNKYKVEVVEGIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFKL---RTVAGAYW 204

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R               +++ L+ +  +   S  + + +  +  EE  K       ++L+L
Sbjct: 205 R------------GNSKNKMLQRIYGY-SFSNEDRLKKHLKFMEEAEKRDHRKLGKELEL 251


>gi|261208968|ref|ZP_05923373.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289565220|ref|ZP_06445672.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|294615018|ref|ZP_06694907.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
 gi|260077007|gb|EEW64729.1| threonyl-tRNA synthetase [Enterococcus faecium TC 6]
 gi|289163041|gb|EFD10889.1| threonyl-tRNA synthetase [Enterococcus faecium D344SRF]
 gi|291592149|gb|EFF23769.1| threonyl-tRNA synthetase [Enterococcus faecium E1636]
          Length = 647

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 3/176 (1%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      +     +  + S+ +           + HSA HL+  A+  +  +   
Sbjct: 33  KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGLVRHSAAHLMAQAMRRLYPNIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              +T+ +L +IE  +  I+ +NLP+  R++++++A+   A+ 
Sbjct: 93  GVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +    +    V           LC G HV STG I +  ++S   +     R
Sbjct: 153 PYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQVFKLLS---VAGAYWR 205


>gi|303253033|ref|ZP_07339186.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307247204|ref|ZP_07529254.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|302648123|gb|EFL78326.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306856262|gb|EFM88415.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
          Length = 643

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV + ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVVKKSVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +        +     +     R ++      R +     +K K LA +L         
Sbjct: 187 VPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAK 241

Query: 759 R 759
           R
Sbjct: 242 R 242


>gi|293569265|ref|ZP_06680563.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
 gi|291587971|gb|EFF19821.1| threonyl-tRNA synthetase [Enterococcus faecium E1071]
          Length = 646

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 3/176 (1%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      +     +  + S+ +           + HSA HL+  A+  +  +   
Sbjct: 33  KKALAGKVNGKLVDLTRPIEEDASIEIITPDHEDALGLVRHSAAHLMAQAMRRLYPNIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              +T+ +L +IE  +  I+ +NLP+  R++++++A+   A+ 
Sbjct: 93  GVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +  + +    V           LC G HV STG I +  ++S   +     R
Sbjct: 153 PYKVELINELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQVFKLLS---VAGAYWR 205


>gi|288959315|ref|YP_003449656.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
 gi|288911623|dbj|BAI73112.1| threonyl-tRNA synthetase [Azospirillum sp. B510]
          Length = 650

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I   G  +D    +P T  +L+ IE  + +++A
Sbjct: 74  IRHDAAHVLADAVQKLYPGTQVTIGPSIAT-GFYYDFARDEPFTPEDLEKIEAKMRELVA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            ++P++  + +R++AIA      LG  Y   +     + E   V+       LC G H  
Sbjct: 133 ADIPILREVWDRDEAIAYF--KKLGEHYKAELIETIPQGEPVSVYRQGDWLDLCRGPHAM 190

Query: 701 STGEIM-LLYIVSESSIRAGIRR 722
           +TG++     ++    +     R
Sbjct: 191 TTGKVGQGFKLMK---VAGAYWR 210


>gi|238895235|ref|YP_002919970.1| threonyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238547552|dbj|BAH63903.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 642

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  +  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPNTKMAIGPVVD-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|77919019|ref|YP_356834.1| threonyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
 gi|123770467|sp|Q3A4P3|SYT_PELCD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77545102|gb|ABA88664.1| Ser-tRNA(Thr) hydrolase [Pelobacter carbinolicus DSM 2380]
          Length = 638

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 18/175 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDII 643
             H+A HL+ HA+  + G  V         +G  +D        +  + + IE  + +++
Sbjct: 73  YRHTAAHLMAHAVKDLYGDRVQVTIGPAVENGFYYDFYCEDHAFSPDDFEKIEKRMQELV 132

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             NLP+    ++R+ AIA      LG  Y   + +  ++     ++       LC G H+
Sbjct: 133 KANLPIEREEVSRDSAIALF--RELGEHYKVEL-IEDLDAPTVSLYRQGDFVDLCRGPHL 189

Query: 700 SSTGEIMLLYIVSESS-------IRAGIRRIEAIT---GQRARSHLMGQDEKLKS 744
            STG I    + S +          A ++RI A      +  R++L   +E  K 
Sbjct: 190 PSTGRIKAFKLTSVAGAYWRGSEKNAMLQRIYATAFPDKKELRTYLNKLEEARKR 244


>gi|238021043|ref|ZP_04601469.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
 gi|237868023|gb|EEP69029.1| hypothetical protein GCWU000324_00940 [Kingella oralis ATCC 51147]
          Length = 637

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  S     G  I  DG  +D+   KP T  ++ +IE  + ++I 
Sbjct: 73  IRHSCAHLVGHAVKQLFPSVKMVIGPVI-EDGFYYDIFSEKPFTPEDIAAIETRMKELIN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+  V+ ++  R + I        G  Y      D    ++            +C G HV
Sbjct: 132 QDYDVIKKMTPRAEVIEIFKQR--GEDYKLRLIDDMADDITAMGMYYHQEYVDMCRGPHV 189

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +   S                A       +E+L+ +      ++ ++   
Sbjct: 190 PNTRFLKNFKLTKVSG---------------AYWRGDSNNEQLQRIYGTAWANKDDLKAY 234

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  I E  ++      K+
Sbjct: 235 ITRIEEAEKRDHRKLGKQ 252


>gi|317477275|ref|ZP_07936512.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906587|gb|EFV28304.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 102

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +   T  ++K++E+ VN II Q+LPV T  + +E+A        L    ++ VRVV V 
Sbjct: 1   MTACPTEEQIKNLENTVNQIIMQHLPVTTEFITQEEAKGRFDLKRLPEDASETVRVVKV- 59

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR-RIEAI 726
               G +   LC GTHV++T EI    I+S        R RI   
Sbjct: 60  ----GDYDECLCIGTHVANTSEIGTFKIISHDWDGENKRWRIRFK 100


>gi|307249432|ref|ZP_07531421.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858506|gb|EFM90573.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 643

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV + ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVVKKSVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +        +     +     R ++      R +     +K K LA +L         
Sbjct: 187 VPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAK 241

Query: 759 R 759
           R
Sbjct: 242 R 242


>gi|238927112|ref|ZP_04658872.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
 gi|238885092|gb|EEQ48730.1| threonine--tRNA ligase [Selenomonas flueggei ATCC 43531]
          Length = 639

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 77/201 (38%), Gaps = 22/201 (10%)

Query: 582 QLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + ++ H+A H++  A+  +    +V         +G  +D      +T A+L  IE  + 
Sbjct: 68  RHALRHTAAHVMAQAVKRLYPESNVQLAIGPAIENGFYYDFDMEHQLTDADLHEIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ +N P+V R ++R DAIA       G  Y   +     E     +++      LC G
Sbjct: 128 KIVKENFPLVRREISRADAIALF--REKGENYKVELIEDLPENAVISLYTQGEFTDLCAG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV+STG++    +    S+     R               +++ L+ +       Q  +
Sbjct: 186 PHVASTGKVKAFKL---QSVAGAYWR------------GSEKNKMLQRIYGTAFEKQEEL 230

Query: 757 VGRVEEIWEEYRKLQLIHAKR 777
              +  + E  ++      K 
Sbjct: 231 DAYLHMLEEAAKRDHRKLGKE 251


>gi|218190922|gb|EEC73349.1| hypothetical protein OsI_07557 [Oryza sativa Indica Group]
          Length = 674

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 14/189 (7%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E  +VL  +  + R L I H+  H++  A+  +  +     G  I  +G  +D    +P
Sbjct: 87  EEERVVLPTNESSDRLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWID-NGFYYDFDM-EP 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVE 682
           +T  +LK I+  ++ II +NLP+V   ++RE+A     A  L   Y     + ++   + 
Sbjct: 145 LTDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKRIEA--LNEPYKLEILEGIKEEPIT 202

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G     LC G HV STG+I     V   S+     R     G  +   L       
Sbjct: 203 IYHIGEEWWDLCAGPHVESTGKIDR-RAVELESVAGAYWR-----GDESNQMLQRIYGTA 256

Query: 743 KSLASFLKV 751
                 LK 
Sbjct: 257 WETEDQLKA 265


>gi|238792504|ref|ZP_04636137.1| Alanyl-tRNA synthetase-related protein [Yersinia intermedia ATCC
           29909]
 gi|238728139|gb|EEQ19660.1| Alanyl-tRNA synthetase-related protein [Yersinia intermedia ATCC
           29909]
          Length = 208

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 41/228 (17%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +     ++     G++  ++  +T F+ + GGQ  D G   G            + +   
Sbjct: 12  LAADVNVLSCTPDGEQFALILQETIFHPQGGGQPSDIGSIGGSP-----VLHVVQQQNQV 66

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ--NGSCI 612
           VH+  +    +         +D + R   +  HSA H++       +G         +  
Sbjct: 67  VHYVAL---PVALG-KQPAHVDRERRILNTRMHSAGHVI-----GNIGESYGWLPIKAHH 117

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            P   R     ++     ++  I+  +   I Q+LP  TRI                   
Sbjct: 118 WPGEGRVSFKRAEKQHPIDINIIQTALEQFIDQDLPRQTRI------------------- 158

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             +     + +     +    CGGTHV S  E+  + I S S  + G+
Sbjct: 159 --QGNFREIGFGKLPAY---ACGGTHVCSLRELGHVVIQSISE-KKGV 200


>gi|283797704|ref|ZP_06346857.1| threonine--tRNA ligase [Clostridium sp. M62/1]
 gi|291074600|gb|EFE11964.1| threonine--tRNA ligase [Clostridium sp. M62/1]
          Length = 650

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 22/202 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T  ++  IE  +  I+
Sbjct: 76  ALRHTASHVMAQAVKRLYPDTKLAIGPSI-ADGFYYDVDPASPMTVEDMGKIEAEMKKIV 134

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NLP+    + RE+AIA          Y   +     E  +   +       LC G H+
Sbjct: 135 KENLPIERFTLPREEAIAF--MKEKEEPYKVELIEDLPEGAEISFYRQGEFVDLCAGPHL 192

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST ++         ++     R               +++ L  + +     +  +   
Sbjct: 193 MSTKDVG--KAYKLLNLAGAYWR------------GSEKNKMLTRIYATAFSKKEELEAY 238

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 239 IT-MMEEAKKRDHRKLGKELGL 259


>gi|251772034|gb|EES52606.1| threonyl-tRNA synthetase [Leptospirillum ferrodiazotrophum]
          Length = 587

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +++ HSA H+L  A+  +  S     G   T +G  +D    +P +  +L+ IE+ +  I
Sbjct: 16  MALRHSAAHVLAQAVKRLFPSAQVGIGPA-TEEGFYYDFRFERPFSPEDLEKIEEEMRRI 74

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           IA + P+V R ++RE A         G  +   +        +  V+       LC G H
Sbjct: 75  IATDAPIVRRPLSREAAHELFEKT--GEPFKLEILHSIPAEAEITVYDQGEFTDLCRGPH 132

Query: 699 VSSTGEIMLLYIVSESS 715
           +  TG+I  + ++S S 
Sbjct: 133 LPGTGQIGAVKLLSSSG 149


>gi|188533977|ref|YP_001907774.1| threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
 gi|238689736|sp|B2VEM1|SYT_ERWT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188029019|emb|CAO96887.1| Threonyl-tRNA synthetase [Erwinia tasmaniensis Et1/99]
          Length = 642

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 79/189 (41%), Gaps = 13/189 (6%)

Query: 567 TEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
            + + V  I  ++   L I  HS  HLL HA+  +        G  I  +G  +DV   +
Sbjct: 52  VDDASVAIITAKDEAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDLDR 110

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
            +T  +++ +E  ++ +   N  V+ + ++ ++A  + AA   G  Y   +   ++ ++D
Sbjct: 111 TLTQEDIELLEKRMHQLAETNYDVIKKKVSWQEARDAFAAR--GENYKTTILDENISHDD 168

Query: 686 -GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
             G++       +C G HV +        +     I     R ++      R +     +
Sbjct: 169 RPGLYHHQEYVDMCRGPHVPNMRFCHHFKL---QKISGAYWRGDSNNKMLQRIYGTAWAD 225

Query: 741 KLKSLASFL 749
           K K LA++L
Sbjct: 226 K-KQLAAYL 233


>gi|82751271|ref|YP_417012.1| threonyl-tRNA synthetase [Staphylococcus aureus RF122]
 gi|123768508|sp|Q2YTA7|SYT_STAAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82656802|emb|CAI81231.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus RF122]
          Length = 645

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPVSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|221311719|ref|ZP_03593566.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316045|ref|ZP_03597850.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221320956|ref|ZP_03602250.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325241|ref|ZP_03606535.1| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767793|ref|NP_391636.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763338|sp|P18256|SYT2_BACSU RecName: Full=Threonyl-tRNA synthetase 2; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225185421|emb|CAB15783.2| threonyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 638

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 7/173 (4%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K A G      +     L  +  L ++T+D Q   Q+   H+  H+L  A+  + G  V
Sbjct: 36  KKAAAGQVNGKLVDLSFKLEEDAELSIVTLDSQEGLQVLR-HTTAHVLAQAVKRLYGE-V 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA- 664
           S     +  DG  +D+   K + S +L++IE  + +II +NL +    ++ E+A    A 
Sbjct: 94  SLGVGPVILDGFYYDMKLGKSLASGDLEAIEKEMKNIINENLEIKRIEVSYEEAEELFAQ 153

Query: 665 --AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               L      D  R   +     G     LC G H+ STG I    +   S 
Sbjct: 154 KDERLKLEILKDIPRGEDITLYQQGEFVD-LCRGPHLPSTGMIKAFKLTRVSG 205


>gi|168183457|ref|ZP_02618121.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796594|ref|YP_002864146.1| threonyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|259516348|sp|C3KTK0|SYT_CLOB6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|182673322|gb|EDT85283.1| threonine--tRNA ligase [Clostridium botulinum Bf]
 gi|229263282|gb|ACQ54315.1| threonine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 635

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+  H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGAHILAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAI--NLMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A       ++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGDENNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMLEEAKKRDHRKLGKELDL 252


>gi|115446545|ref|NP_001047052.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|50251985|dbj|BAD27919.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|50252661|dbj|BAD28830.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113536583|dbj|BAF08966.1| Os02g0538000 [Oryza sativa Japonica Group]
 gi|215765092|dbj|BAG86789.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623006|gb|EEE57138.1| hypothetical protein OsJ_07040 [Oryza sativa Japonica Group]
          Length = 674

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 14/189 (7%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E  +VL  +  + R L I H+  H++  A+  +  +     G  I  +G  +D    +P
Sbjct: 87  EEERVVLPTNESSDRLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWID-NGFYYDFDM-EP 144

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVE 682
           +T  +LK I+  ++ II +NLP+V   ++RE+A     A  L   Y     + ++   + 
Sbjct: 145 LTDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKRIEA--LNEPYKLEILEGIKEDPIT 202

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
               G     LC G HV STG+I     V   S+     R     G  +   L       
Sbjct: 203 IYHIGEEWWDLCAGPHVESTGKIDR-RAVELESVAGAYWR-----GDESNQMLQRIYGTA 256

Query: 743 KSLASFLKV 751
                 LK 
Sbjct: 257 WETEDQLKA 265


>gi|50121350|ref|YP_050517.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
 gi|73919790|sp|Q6D4G8|SYT_ERWCT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49611876|emb|CAG75325.1| threonyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043]
          Length = 642

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIELLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TDYDVIKKKVSWQEARDAFAAR--GETYKIAILDENISHDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  + 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLASYLQRLEEASK 241


>gi|28199783|ref|NP_780097.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182682533|ref|YP_001830693.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|32130161|sp|Q87AB2|SYT_XYLFT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691115|sp|B2I9P8|SYT_XYLF2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28057904|gb|AAO29746.1| threonyl-tRNA synthetase [Xylella fastidiosa Temecula1]
 gi|182632643|gb|ACB93419.1| threonyl-tRNA synthetase [Xylella fastidiosa M23]
 gi|307578811|gb|ADN62780.1| threonyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 635

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVI-ADGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSA----LCGGTHV 699
           Q+  VV  I  R D +        G  Y  R+      E    G++       +C G HV
Sbjct: 131 QDYDVVKHITARHDVVRLFKER--GEDYKLRLIEDMGPEVTAMGIYHHQEYVDMCRGPHV 188

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +     I     R               ++E+L+ +       +  +   
Sbjct: 189 PNTRFLKAFRLT---RISGAYWR------------GNTKNEQLQRIYGTAWADKKQLEAY 233

Query: 760 VEEIWEEYRKLQLIHAKRK 778
           ++ + +  ++      K +
Sbjct: 234 MQRLQDAEKRDHRKIGKAQ 252


>gi|315651290|ref|ZP_07904318.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
 gi|315486442|gb|EFU76796.1| threonine--tRNA ligase [Eubacterium saburreum DSM 3986]
          Length = 651

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 18/171 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H+L  A+  I        G  I  +G  +D  H +P +  +L  +E  +  II 
Sbjct: 70  IRHTASHVLAQAVKRIFPQAKLAIGPSI-AEGFYYDFEH-EPFSRDDLDKLEAEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +    + RE+AI           Y   +     + E    +       LC G H+ 
Sbjct: 128 EGEAIERFELPREEAIKF--MEEKNEPYKVELIRDLPQDEKISFYKQGDFTDLCAGPHLQ 185

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIEAI---TGQRARSHLMGQDEK 741
            T +I    +VS S       S +A ++RI      T +   ++L   ++ 
Sbjct: 186 RTKDIKAFKLVSSSMAYWRGDSNKARLQRIYGTAYNTKEELEAYLKHLEDI 236


>gi|238787089|ref|ZP_04630889.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
 gi|238724877|gb|EEQ16517.1| Threonyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641]
          Length = 642

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWGDKKQLNAYLQRLEEAAK 241


>gi|242238069|ref|YP_002986250.1| threonyl/alanyl tRNA synthetase SAD [Dickeya dadantii Ech703]
 gi|242130126|gb|ACS84428.1| Threonyl/alanyl tRNA synthetase SAD [Dickeya dadantii Ech703]
          Length = 210

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 36/215 (16%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566
           +G   EV+   TPF+ + GGQ  D G   G    + +T V    EGI+          + 
Sbjct: 25  AGGGYEVLLSCTPFHPQGGGQPADRGTIDG----VAVTHVVMAPEGIWH----FTDEPIA 76

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
              ++   +D + R+  S  HSA HL+ H +++   + V    +   P   R + +    
Sbjct: 77  PG-AVRAQVDGECRQWHSRWHSAGHLIAHIMASQGWTPV---KAHHWPGEGRIEFSPGIN 132

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
                + ++    +  +A + P     +NR+                D  R V       
Sbjct: 133 SHDITVPALAALCSAAVAADWP---CRVNRQQ---------------DGFRTVGF----- 169

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
           G  +   CGGTHV S   I  + I      + G R
Sbjct: 170 GEFTPYPCGGTHVGSLKIIGDMVITDV-KNKKGKR 203


>gi|143764|gb|AAA22863.1| threonyl-tRNA synthetase (thrS2) (EC 6.1.1.3) [Bacillus subtilis]
          Length = 638

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 7/173 (4%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K A G      +     L  +  L ++T+D Q   Q+   H+  H+L  A+  + G  V
Sbjct: 36  KKAAAGQVNGKLVDLSFKLEEDAELSIVTLDSQEGLQVVR-HTTAHVLAQAVKRLYGE-V 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA- 664
           S     +  DG  +D+   K + S +L++IE  + +II +NL +    ++ E+A    A 
Sbjct: 94  SLGVGPVILDGFYYDMKLGKSLASGDLEAIEKEMKNIINENLEIKRIEVSYEEAEELFAQ 153

Query: 665 --AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               L      D  R   +     G     LC G H+ STG I    +   S 
Sbjct: 154 KDERLKLEILKDIPRGEDITLYQQGEFVD-LCRGPHLPSTGMIKAFKLTRVSG 205


>gi|55981844|ref|YP_145141.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
 gi|7388285|sp|P56881|SYT_THET8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6689424|emb|CAB65483.1| threonyl-tRNA synthetase [Thermus thermophilus]
 gi|55773257|dbj|BAD71698.1| threonyl-tRNA synthetase [Thermus thermophilus HB8]
          Length = 659

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 40/248 (16%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   A+G+G        ++    I           L     + L  +     Q  
Sbjct: 16  GATAKDVARALGEGWE------RRAVGAIVDGELYDLLKPLPQGAKVRLLTEKDPEFQTL 69

Query: 585 INHSATHLLHHALST------ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             H+  H+L  A+             V      +   G  +D+   +P++  +L +IE  
Sbjct: 70  FRHTLAHVLAQAVKEFFREKGYDPESVRLGVGPVIEKGFYYDIEAPEPLSDEDLPAIEAK 129

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
           + +I+ ++LP+   +++RE+A+A          Y   + +   E E+   +         
Sbjct: 130 MREILKRDLPLRRFVLSREEALARYRGK---DPYKTELVLEIPEGEEISFYQQGDEAYGF 186

Query: 692 -ALCGGTHVSSTGEIML-LYIVSESSIRAGIRR-------------IEAITGQRARSHLM 736
             LC G HV STG I     +     +     R             +   T +  + +L 
Sbjct: 187 TDLCRGPHVPSTGRIPPHFKLT---HVAGAYWRGDENRPMLQRVYGVAFRTAEELKEYLW 243

Query: 737 GQDEKLKS 744
             +E  K 
Sbjct: 244 QLEEAKKR 251


>gi|294782476|ref|ZP_06747802.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294481117|gb|EFG28892.1| threonine--tRNA ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 637

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 87/240 (36%), Gaps = 24/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          +    +L  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 31  KKSVGAKVDGKNVDMSYVLDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPETK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 90  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKRIVKENIKLEKYVLPRDEAIDYF-R 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   +     + E    +       LC GTHV STG +    +    ++     
Sbjct: 148 DVDKNKYKVEIVEGIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFKL---RTVAGAYW 204

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R               +++ L+ +  +   S  + + +  +  EE  K       ++L+L
Sbjct: 205 R------------GNSKNKMLQRIYGY-SFSNEDRLKKHLKFMEEAEKRDHRKLGKELEL 251


>gi|163846770|ref|YP_001634814.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222524584|ref|YP_002569055.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
 gi|163668059|gb|ABY34425.1| threonyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222448463|gb|ACM52729.1| threonyl-tRNA synthetase [Chloroflexus sp. Y-400-fl]
          Length = 594

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 67/194 (34%), Gaps = 28/194 (14%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D  +     + HS  H++  A+  I        G  I  +G  +D    +P+T  +L  
Sbjct: 3   VDPNSDPYYRLRHSLAHVMAQAVLEIFPDAKIAIGPPI-ENGFYYDFDLPRPLTPEDLSE 61

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----------TKYNDRVRVVSVEY 683
           IE  +  IIA N P + R +  E+A    A                 +Y +     +V  
Sbjct: 62  IERRMKRIIAGNHPFIYREVTAEEARQIFANQPYKLELIEGLAKGLDEYGETHHGDTVIS 121

Query: 684 EDGGVHSSALCGGTHVSSTGEIML--LYIVSESSIRAGIR----------RIEAITGQRA 731
                    LC G H++ TGEI      ++S   I               RI   TG   
Sbjct: 122 TYRQDTFEDLCRGPHLNHTGEINPEAFKLMS---IAGAYWRGDEKNRQLQRIYG-TGWNT 177

Query: 732 RSHLMGQDEKLKSL 745
           +  L     +L+  
Sbjct: 178 KEELEAYLHRLEEA 191


>gi|56751513|ref|YP_172214.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
 gi|73919835|sp|Q5N1X6|SYT_SYNP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56686472|dbj|BAD79694.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 6301]
          Length = 607

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G   T  G  +D    +P T A+LK+I+  +  II
Sbjct: 27  RIRHTMSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDTPEPFTEADLKAIKKEMVKII 85

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVS 700
            Q LPVV   ++RE+A     A  LG  Y   +       +     G     LC G HV 
Sbjct: 86  QQKLPVVREEVSREEAQQRIEA--LGEPYKLEILQGLTEPITLYHLGDRWWDLCAGPHVE 143

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           +T E+         S+     R     G   ++ L                +   +    
Sbjct: 144 TTAELNP-KAFDLESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLTEYK 190

Query: 759 --RVEEIWEEYRKL 770
             + E +  ++RKL
Sbjct: 191 RRKEEALKRDHRKL 204


>gi|314936214|ref|ZP_07843561.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
 gi|313654833|gb|EFS18578.1| threonine--tRNA ligase [Staphylococcus hominis subsp. hominis C80]
          Length = 645

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F +  +     L  + ++ +     +     
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNNQLVDLTRPLEEDGAIEIVTPGSDEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  I G  V      +   G  +D    + ++S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRIYGD-VKFGVGPVIEGGFYYDFDMDEKVSSDDFEKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +  ++++RE+A            Y   +     E E+  +++      LC G HV 
Sbjct: 132 ENYKIERKVVSREEAKDFF----KDDPYKLELIDAIPEDENVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|238783384|ref|ZP_04627407.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
 gi|238715629|gb|EEQ07618.1| Threonyl-tRNA synthetase [Yersinia bercovieri ATCC 43970]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWGDKKQLNAYLQRLEEAAK 241


>gi|238749482|ref|ZP_04610987.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
 gi|238712137|gb|EEQ04350.1| Threonyl-tRNA synthetase [Yersinia rohdei ATCC 43380]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWGDKKQLNAYLQRLEEAAK 241


>gi|266620391|ref|ZP_06113326.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288868018|gb|EFD00317.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 633

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           + + +H+ +H+L  A+  +        G  IT DG  +D    +P +  +L+++E  +  
Sbjct: 67  RAAFHHTTSHILAQAVKRLFPETKLAIGPSIT-DGFYYDFDRPEPFSPEDLEALETEMKK 125

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+ ++L +    + R++AIA          Y   +     E E    +       LC G 
Sbjct: 126 IVKEDLKLEYFTLPRKEAIA--LMQEKDEPYKVELIEDLPEEEIISFYRQGEYTDLCAGP 183

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           H+ +TG +    + S   I     R
Sbjct: 184 HLMTTGPVKAFKLTS---IAGAYWR 205


>gi|182679322|ref|YP_001833468.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635205|gb|ACB95979.1| threonyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 644

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 19/183 (10%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H++  A+ T+        G  I  +G  +D   ++P T A+  +IE  +
Sbjct: 66  RGLDLIRHDAAHVMAEAVQTLYPGTQVTIGPVI-ENGFYYDFYRNEPFTPADFAAIEKKM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++ P    + +R++A A       G  +   +       ED  ++       LC 
Sbjct: 125 GEIIARDKPFTKEVWSRDEAKAWFETH--GEAFKVELVDSIPGNEDLKIYRQGEWLDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G H+ STG+I     ++  +         +  ++RI A     A ++    D  LK L  
Sbjct: 183 GPHLPSTGKIGTAFKLMKVAGAYWRGDHTKPMLQRIYAT----AFANKQELDAYLKQLEE 238

Query: 748 FLK 750
             K
Sbjct: 239 AEK 241


>gi|261821451|ref|YP_003259557.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
 gi|261605464|gb|ACX87950.1| threonyl-tRNA synthetase [Pectobacterium wasabiae WPP163]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIELLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TDYDVIKKKVSWQEARDAFAAR--GETYKIAILDENISHDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  + 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLASYLQRLEEASK 241


>gi|170759804|ref|YP_001788457.1| threonyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|238688792|sp|B1L0T7|SYT_CLOBM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169406793|gb|ACA55204.1| threonine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree]
          Length = 635

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+  H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGAHILAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEMLEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAID--LMKEKNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A       ++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGDENNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMLEEAKKRDHRKLGKELDL 252


>gi|152970729|ref|YP_001335838.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330009686|ref|ZP_08306560.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
 gi|150955578|gb|ABR77608.1| threonyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328534774|gb|EGF61330.1| threonine--tRNA ligase [Klebsiella sp. MS 92-3]
          Length = 622

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  +  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWPNTKMAIGPVVD-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYIDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|257467995|ref|ZP_05632091.1| threonyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185]
 gi|317062281|ref|ZP_07926766.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313687957|gb|EFS24792.1| threonine-tRNA ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 637

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  +G  +D    +  T  +L  IE  +  I+ 
Sbjct: 70  IRHSTAHLMAQAVIRLFPGTKVAIGPAI-ENGFYYDFDPKEQFTEEDLVKIEAEMKKIVK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +   +M RE+AI       LG  Y   +     + E    +       LC G HV 
Sbjct: 129 ENEKIERVMMTREEAIEHFEK--LGEIYKVEIIKEIAQGEILSFYKQGEFMDLCRGPHVP 186

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  +    +    S+     R
Sbjct: 187 STSYLKAFKL---KSVAGAYWR 205


>gi|81301415|ref|YP_401623.1| threonyl-tRNA synthetase [Synechococcus elongatus PCC 7942]
 gi|123769177|sp|Q31JY3|SYT_SYNE7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81170296|gb|ABB58636.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Synechococcus
           elongatus PCC 7942]
          Length = 604

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G   T  G  +D    +P T A+LK+I+  +  II
Sbjct: 24  RIRHTMSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDTPEPFTEADLKAIKKEMVKII 82

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVS 700
            Q LPVV   ++RE+A     A  LG  Y   +       +     G     LC G HV 
Sbjct: 83  QQKLPVVREEVSREEAQQRIEA--LGEPYKLEILQGLTEPITLYHLGDRWWDLCAGPHVE 140

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           +T E+         S+     R     G   ++ L                +   +    
Sbjct: 141 TTAELNP-KAFDLESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLTEYK 187

Query: 759 --RVEEIWEEYRKL 770
             + E +  ++RKL
Sbjct: 188 RRKEEALKRDHRKL 201


>gi|269119235|ref|YP_003307412.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
 gi|268613113|gb|ACZ07481.1| threonyl-tRNA synthetase [Sebaldella termitidis ATCC 33386]
          Length = 634

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           +TID +   ++   HSA H++  A+  +        G  I  +G  +D     P T  +L
Sbjct: 60  ITIDSEKGTEILR-HSAAHIMAQAVQRLFPGTKVTIGPVI-ENGFFYDFDPENPFTEDDL 117

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-- 690
             IE+ +  II +N       M+  DA        +   Y     +  +  E   +++  
Sbjct: 118 AKIENEMKKIIKENYKFERTEMSAADAKKMFLD--MKEDYKIE-IIDDLGEEKVSIYTIG 174

Query: 691 --SALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT 727
               LC GTH+ STG +    ++S +       S +  ++RI  + 
Sbjct: 175 EFKDLCRGTHLPSTGYLKAFKLMSTAGAYWRGDSNKKMLQRIYGVA 220


>gi|262044121|ref|ZP_06017196.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038520|gb|EEW39716.1| threonine-tRNA ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 622

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  +  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWPNTKMAIGPVVD-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYIDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|269792334|ref|YP_003317238.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099969|gb|ACZ18956.1| threonyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 631

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA+HL+  A+  +        G  I  DG  +D+     +T  +L  IE+ +  I+ 
Sbjct: 69  LRHSASHLMAQAVMRLFPGAKLGIGPSI-KDGFYYDILFPSQVTDEDLPRIEEEMMRIVR 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            +LPV   +M R++A+    +   G  +   + +  ++ +   ++       LC G HV 
Sbjct: 128 DDLPVERLVMGRDEALELFRSR--GEDFKLEL-ISEIQDDTVSLYRQGEFVDLCRGPHVP 184

Query: 701 STGEIMLLYIVS-----ESSIRAGI--RRIE---AITGQRARSHLMGQDEK 741
            TG +  + ++S            +   RI     + G+   ++L   +E 
Sbjct: 185 RTGMLKHVKLLSLAGAYWRGDEKNVMLTRIYGTAFMDGESLGAYLNRLEEA 235


>gi|227327045|ref|ZP_03831069.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIELLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 TDYDVIKKKVSWQEARDAFAAR--GETYKIAILDENISRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  + 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLAAYLQRLEEASK 241


>gi|300924761|ref|ZP_07140703.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
 gi|300419049|gb|EFK02360.1| threonyl-tRNA synthetase [Escherichia coli MS 182-1]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|292488129|ref|YP_003531006.1| threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|292899340|ref|YP_003538709.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291199188|emb|CBJ46302.1| threonyl-tRNA synthetase [Erwinia amylovora ATCC 49946]
 gi|291553553|emb|CBA20598.1| Threonyl-tRNA synthetase [Erwinia amylovora CFBP1430]
 gi|312172261|emb|CBX80518.1| Threonyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++ +  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDLDRTLTQEDIELLEKRMHQLAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TNYDVIKKTVSWQEAHDAFAAR--GENYKMTILDENISHDDRPGLYHHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     I     R ++      R +     +K K LA++L
Sbjct: 188 PNMRFCHHFKL---QKISGAYWRGDSNNKMLQRIYGTAWADK-KQLAAYL 233


>gi|225627544|ref|ZP_03785581.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
 gi|225617549|gb|EEH14594.1| threonyl-tRNA synthetase [Brucella ceti str. Cudo]
          Length = 693

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 71  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 130

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 131 TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 189

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 190 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 244

Query: 722 RIEA 725
           R +A
Sbjct: 245 RGDA 248


>gi|324119204|gb|EGC13092.1| threonyl-tRNA synthetase [Escherichia coli E1167]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|237740439|ref|ZP_04570920.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
 gi|229422456|gb|EEO37503.1| threonyl-tRNA synthetase [Fusobacterium sp. 2_1_31]
          Length = 637

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K          I    +L  +  +  + ID      +   HS  HL+  A+  +     
Sbjct: 31  KKSVGAKVDGKNIDMSYVLDHDAEVEFIDIDSPEGEDIVR-HSTAHLMAQAVLRLYPETK 89

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +  T  +L+ IE  +  I+ +N+ +   ++ R++AI     
Sbjct: 90  VTIGPVI-ENGFYYDFDPVEQFTEEDLEKIEAEMKRIVKENIKLEKYVLPRDEAIDYF-R 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +   KY   +     + E    +       LC GTHV STG +    +    ++     
Sbjct: 148 DVDKNKYKVEIVEGIPQGEQVSFYKQGDFTDLCRGTHVPSTGYLKAFKL---RTVAGAYW 204

Query: 722 RIEAITG--QRARSHLMGQDEKLKSLASFLKVSQG 754
           R  +     QR   +    +++LK    F++ ++ 
Sbjct: 205 RGNSKNKMLQRIYGYSFSNEDRLKKHLKFMEEAEK 239


>gi|22325483|ref|NP_671778.1| EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA
           ligase/ ligase, forming aminoacyl-tRNA and related
           compounds / nucleotide binding / threonine-tRNA ligase
           [Arabidopsis thaliana]
 gi|330250779|gb|AEC05873.1| putative threonyl-tRNA synthetase, putative / threonine--tRNA
           ligase [Arabidopsis thaliana]
          Length = 650

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 14/186 (7%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++VL  +  + + L I H+  H++  A+  +        G  I  +G  +D    +P+T 
Sbjct: 67  TVVLPSNESSDKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWID-NGFYYDFDM-EPLTD 124

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYED 685
            +LK I+  ++ II++NLP++   ++RE+A        +   Y     D ++   +    
Sbjct: 125 KDLKRIKKEMDRIISRNLPLLREEVSREEAKKR--IMAINEPYKMEILDGIKEEPITVYH 182

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G     LC G HV +TG+I     V   S+     R     G   R  L          
Sbjct: 183 IGNEWWDLCAGPHVETTGKINK-KAVELESVAGAYWR-----GDEKRQMLQRIYGTAWES 236

Query: 746 ASFLKV 751
              LK 
Sbjct: 237 EEQLKA 242


>gi|257869188|ref|ZP_05648841.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
 gi|257803352|gb|EEV32174.1| threonyl-tRNA synthetase [Enterococcus gallinarum EG2]
          Length = 646

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 6/166 (3%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             ++RGI       ++T D+++   L   HSA HL+  A+  +  +     G  I     
Sbjct: 46  IDLDRGIEEDAQIEIVTPDHEDALGLVR-HSAAHLMAQAMRRLYPNIHFGVGPAIDTGFY 104

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRV 676
                   PIT+ +L +IE  +  I+ +NLP+  R++++++A+   A      +  ++  
Sbjct: 105 YDTDNGESPITAEDLPAIEAEMMKIVKENLPIERRVLSKKEALELFAEDPYKVELISELP 164

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              ++     G     LC G HV STG I +  ++S   +     R
Sbjct: 165 EDETITAYQQGEFVD-LCRGPHVPSTGRIQVFKLLS---VAGAYWR 206


>gi|239637520|ref|ZP_04678492.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
 gi|239596738|gb|EEQ79263.1| threonyl-tRNA synthetase [Staphylococcus warneri L37603]
          Length = 645

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L  +  + +     +     
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQMVDLTRPLEEDGEIEIVTPGSDEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVI-EGGFYYDFDTDEKISSDDFEKIEKTMKKIVD 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +  +++ R++A A          Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENHKIERKVVTRDEAKAFF----KDDPYKLELIDAIPEDENVTLYSQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|308234806|ref|ZP_07665543.1| threonyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
 gi|311114574|ref|YP_003985795.1| threonine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946068|gb|ADP38772.1| threonine--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 676

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 565 LRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L    ++  + +D ++   +   HSATH++  A+  I        G  I  DG  +D   
Sbjct: 49  LHNGDTVESVALDSEDGIAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFDV 106

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN--DRV 676
             P T  +LK IE ++  II ++     R++  ++A            L+G K    D  
Sbjct: 107 DTPFTPDDLKQIEKHMQRIIKESQSFRRRVVTEDEAREEEANQPYKLELIGDKEAALDPA 166

Query: 677 RVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   +  ++           S LC G H+ +T  I    +     + A   R
Sbjct: 167 AAGEISKHELSMYDNLDREGNKVWSDLCRGPHLPNTRYIKAFKL---ERVAAAYWR 219


>gi|157158126|ref|YP_001463015.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|157161181|ref|YP_001458499.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|170019932|ref|YP_001724886.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|193068904|ref|ZP_03049863.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209919078|ref|YP_002293162.1| threonyl-tRNA synthetase [Escherichia coli SE11]
 gi|218695280|ref|YP_002402947.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|256018088|ref|ZP_05431953.1| threonyl-tRNA synthetase [Shigella sp. D9]
 gi|166987321|sp|A7ZMI6|SYT_ECO24 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987322|sp|A8A0R2|SYT_ECOHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083607|sp|B1IPK9|SYT_ECOLC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065113|sp|B6IBD7|SYT_ECOSE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783522|sp|B7L6J2|SYT_ECO55 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157066861|gb|ABV06116.1| threonyl-tRNA synthetase [Escherichia coli HS]
 gi|157080156|gb|ABV19864.1| threonyl-tRNA synthetase [Escherichia coli E24377A]
 gi|169754860|gb|ACA77559.1| threonyl-tRNA synthetase [Escherichia coli ATCC 8739]
 gi|192957699|gb|EDV88143.1| threonyl-tRNA synthetase [Escherichia coli E110019]
 gi|209912337|dbj|BAG77411.1| threonyl-tRNA synthase [Escherichia coli SE11]
 gi|218352012|emb|CAU97745.1| threonyl-tRNA synthetase [Escherichia coli 55989]
 gi|320197902|gb|EFW72510.1| Threonyl-tRNA synthetase [Escherichia coli EC4100B]
 gi|323948091|gb|EGB44082.1| threonyl-tRNA synthetase [Escherichia coli H120]
 gi|324016472|gb|EGB85691.1| threonyl-tRNA synthetase [Escherichia coli MS 117-3]
 gi|332101482|gb|EGJ04828.1| threonyl-tRNA synthetase [Shigella sp. D9]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|307245030|ref|ZP_07527126.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307253984|ref|ZP_07535834.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258439|ref|ZP_07540179.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306854073|gb|EFM86282.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306863062|gb|EFM95006.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867501|gb|EFM99349.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
          Length = 643

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV + ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVVKKRVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +        +     +     R ++      R +     +K K LA +L         
Sbjct: 187 VPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAK 241

Query: 759 R 759
           R
Sbjct: 242 R 242


>gi|298708381|emb|CBJ48444.1| Similar to ATP binding / alanine-tRNA ligase [Ectocarpus
           siliculosus]
          Length = 292

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 94/279 (33%), Gaps = 52/279 (18%)

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
              + V  +V+           Q   ++ D+T F+ + GGQ  D G        + ++ V
Sbjct: 10  TSEATVLGVVEDDS--------QGSAIILDRTIFHPQGGGQPSDEGTITCGDCTVPVSKV 61

Query: 547 QKKAEGIFVHHAIVE---RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH-ALSTILG 602
           +    G+  H+  +    +  L       L +D   R + +  HSA H +    +  +  
Sbjct: 62  R-DVGGVIYHYGTMSGTPQPRLEAGRPASLALDSAKRLRHAALHSAGHAVDKAVVGAVGA 120

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED---NVNDIIAQNLPVVTRIMNREDA 659
              S        D    +   + P    +   IE     ++ ++  N+  + ++ ++E  
Sbjct: 121 GVFSPLKGYHFDDSPYVEYRGTLPAGLEKDAFIEKCNSELDKLVMANMETMVKMADQEHG 180

Query: 660 IASG----AAALLGTKYNDRVR---VVSVEYEDGGVHS---------------------- 690
             +     ++A  G       R    V+V  E GG                         
Sbjct: 181 DEAPSSSSSSAQEGPSRGAAGRGREEVTVVAERGGRGGRGKVPASSTAAAATKYGAATRT 240

Query: 691 ------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                 S  CGGTHV ST E+  + I    + + G  R+
Sbjct: 241 VTVAGLSCPCGGTHVRSTREMEGVRITKVKA-KKGTLRV 278


>gi|165975675|ref|YP_001651268.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190149490|ref|YP_001968015.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251658|ref|ZP_07337831.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251749|ref|ZP_07533652.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307260677|ref|ZP_07542367.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|307262809|ref|ZP_07544434.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|238687519|sp|B0BSM2|SYT_ACTPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238692375|sp|B3H061|SYT_ACTP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165875776|gb|ABY68824.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189914621|gb|ACE60873.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649500|gb|EFL79683.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860750|gb|EFM92760.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306869598|gb|EFN01385.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306871824|gb|EFN03543.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 643

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV + ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVVKKRVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +        +     +     R ++      R +     +K K LA +L         
Sbjct: 187 VPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAK 241

Query: 759 R 759
           R
Sbjct: 242 R 242


>gi|113970292|ref|YP_734085.1| threonyl-tRNA synthetase [Shewanella sp. MR-4]
 gi|117920487|ref|YP_869679.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
 gi|123029660|sp|Q0HIT9|SYT_SHESM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225501|sp|A0KWV4|SYT_SHESA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113884976|gb|ABI39028.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella sp.
           MR-4]
 gi|117612819|gb|ABK48273.1| threonyl-tRNA synthetase [Shewanella sp. ANA-3]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  +++++E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDIDLEHKLTQEDIEALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G +Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFAAR--GEEYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        ++S   I     R               +++ L+ +       +  +   
Sbjct: 188 PNMRFCHHFKLMS---IAGAYWR------------GNSENKMLQRIYGTAWADKKALSTH 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  + E  ++      K+
Sbjct: 233 LARLEEAAKRDHRKIGKQ 250


>gi|82777067|ref|YP_403416.1| threonyl-tRNA synthetase [Shigella dysenteriae Sd197]
 gi|123755748|sp|Q32FI0|SYT_SHIDS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81241215|gb|ABB61925.1| threonine tRNA synthetase [Shigella dysenteriae Sd197]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|307310711|ref|ZP_07590357.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|331647210|ref|ZP_08348304.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331673269|ref|ZP_08374037.1| threonine--tRNA ligase [Escherichia coli TA280]
 gi|281178789|dbj|BAI55119.1| threonyl-tRNA synthetase [Escherichia coli SE15]
 gi|306908889|gb|EFN39385.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315061024|gb|ADT75351.1| threonyl-tRNA synthetase [Escherichia coli W]
 gi|315299748|gb|EFU58988.1| threonyl-tRNA synthetase [Escherichia coli MS 16-3]
 gi|323378405|gb|ADX50673.1| threonyl-tRNA synthetase [Escherichia coli KO11]
 gi|330911523|gb|EGH40033.1| threonyl-tRNA synthetase [Escherichia coli AA86]
 gi|331043993|gb|EGI16129.1| threonine--tRNA ligase [Escherichia coli M605]
 gi|331069467|gb|EGI40854.1| threonine--tRNA ligase [Escherichia coli TA280]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|193065767|ref|ZP_03046830.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194428543|ref|ZP_03061082.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|218554286|ref|YP_002387199.1| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|260844071|ref|YP_003221849.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260855585|ref|YP_003229476.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260868246|ref|YP_003234648.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|293446093|ref|ZP_06662515.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|331668404|ref|ZP_08369252.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331677592|ref|ZP_08378267.1| threonine--tRNA ligase [Escherichia coli H591]
 gi|226701402|sp|B7M1C7|SYT_ECO8A RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|192926539|gb|EDV81170.1| threonyl-tRNA synthetase [Escherichia coli E22]
 gi|194413421|gb|EDX29704.1| threonyl-tRNA synthetase [Escherichia coli B171]
 gi|195182909|dbj|BAG66479.1| threonyl-tRNA synthetase [Escherichia coli O111:H-]
 gi|218361054|emb|CAQ98632.2| threonyl-tRNA synthetase [Escherichia coli IAI1]
 gi|257754234|dbj|BAI25736.1| threonyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257759218|dbj|BAI30715.1| threonyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257764602|dbj|BAI36097.1| threonyl-tRNA synthetase [Escherichia coli O111:H- str. 11128]
 gi|291322923|gb|EFE62351.1| threonyl-tRNA synthetase [Escherichia coli B088]
 gi|323153043|gb|EFZ39312.1| threonyl-tRNA synthetase [Escherichia coli EPECa14]
 gi|331063598|gb|EGI35509.1| threonine--tRNA ligase [Escherichia coli TA271]
 gi|331074052|gb|EGI45372.1| threonine--tRNA ligase [Escherichia coli H591]
          Length = 642

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|148826837|ref|YP_001291590.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
 gi|166223345|sp|A5UEK1|SYT_HAEIG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148718079|gb|ABQ99206.1| threonyl-tRNA synthetase [Haemophilus influenzae PittGG]
          Length = 643

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y      + +   ++      +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTAMPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|283470950|emb|CAQ50161.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 645

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTEPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|219849385|ref|YP_002463818.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
 gi|219543644|gb|ACL25382.1| threonyl-tRNA synthetase [Chloroflexus aggregans DSM 9485]
          Length = 594

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 17/161 (10%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D ++     + HS  H++  A+  I        G  I  +G  +D    +P+T  +L  
Sbjct: 3   VDPKSDPYYRLRHSLAHVMAQAVLEIFPDAKIAIGPPI-ENGFYYDFDLPRPLTPEDLTE 61

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----------TKYNDRVRVVSVEY 683
           IE  +  IIA N P + R +  E+A    A                 +Y +     +V  
Sbjct: 62  IEKRMKRIIAGNHPFIYREVTAEEARQIFANQPYKLELIEGLAKGLDEYGETHHGDTVIS 121

Query: 684 EDGGVHSSALCGGTHVSSTGEIML--LYIVSESSIRAGIRR 722
                    LC G H++ TGEI      ++S   I     R
Sbjct: 122 TYRQDTFEDLCRGPHLNHTGEINPEAFKLMS---IAGAYWR 159


>gi|331663198|ref|ZP_08364108.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331683225|ref|ZP_08383826.1| threonine--tRNA ligase [Escherichia coli H299]
 gi|331058997|gb|EGI30974.1| threonine--tRNA ligase [Escherichia coli TA143]
 gi|331079440|gb|EGI50637.1| threonine--tRNA ligase [Escherichia coli H299]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|16129675|ref|NP_416234.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24112885|ref|NP_707395.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|26247970|ref|NP_754010.1| threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|30063014|ref|NP_837185.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|74311961|ref|YP_310380.1| threonyl-tRNA synthetase [Shigella sonnei Ss046]
 gi|89108559|ref|AP_002339.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|91210933|ref|YP_540919.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110641840|ref|YP_669570.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110805471|ref|YP_688991.1| threonyl-tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|117623893|ref|YP_852806.1| threonyl-tRNA synthetase [Escherichia coli APEC O1]
 gi|170081377|ref|YP_001730697.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680212|ref|YP_001743530.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188492265|ref|ZP_02999535.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|191171752|ref|ZP_03033299.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194435142|ref|ZP_03067376.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194438580|ref|ZP_03070669.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215486938|ref|YP_002329369.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218558588|ref|YP_002391501.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218689663|ref|YP_002397875.1| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218699714|ref|YP_002407343.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218705218|ref|YP_002412737.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|237705668|ref|ZP_04536149.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238900934|ref|YP_002926730.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|253773326|ref|YP_003036157.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161779|ref|YP_003044887.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|256022617|ref|ZP_05436482.1| threonyl-tRNA synthetase [Escherichia sp. 4_1_40B]
 gi|293405218|ref|ZP_06649210.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|293410035|ref|ZP_06653611.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|293415037|ref|ZP_06657680.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|297517244|ref|ZP_06935630.1| threonyl-tRNA synthetase [Escherichia coli OP50]
 gi|298380861|ref|ZP_06990460.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|300938947|ref|ZP_07153648.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|300987614|ref|ZP_07178286.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300994418|ref|ZP_07180923.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|301017728|ref|ZP_07182383.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|301025270|ref|ZP_07188835.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|306815028|ref|ZP_07449184.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307138378|ref|ZP_07497734.1| threonyl-tRNA synthetase [Escherichia coli H736]
 gi|312966921|ref|ZP_07781139.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|331642316|ref|ZP_08343451.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331653119|ref|ZP_08354124.1| threonine--tRNA ligase [Escherichia coli M718]
 gi|67473036|sp|P0A8M3|SYT_ECOLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473037|sp|P0A8M4|SYT_ECOL6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67473038|sp|P0A8M5|SYT_SHIFL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122957455|sp|Q0T4S9|SYT_SHIF8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123084457|sp|Q1RB76|SYT_ECOUT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123343967|sp|Q0THB0|SYT_ECOL5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123732358|sp|Q3Z267|SYT_SHISS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223339|sp|A1ABQ2|SYT_ECOK1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701400|sp|B7MAS9|SYT_ECO45 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701401|sp|B7NT58|SYT_ECO7I RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701403|sp|B7N556|SYT_ECOLU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701404|sp|B1LE12|SYT_ECOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229557979|sp|B1XGI1|SYT_ECODH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783521|sp|B7USA2|SYT_ECO27 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783523|sp|B7MVJ7|SYT_ECO81 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|259516437|sp|C4ZYI1|SYT_ECOBW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|5107656|pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
           With Its Cognate Trna
 gi|26108373|gb|AAN80575.1|AE016761_150 Threonyl-tRNA synthetase [Escherichia coli CFT073]
 gi|1742811|dbj|BAA15498.1| threonyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110]
 gi|1788013|gb|AAC74789.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24051829|gb|AAN43102.1| threonine tRNA synthetase [Shigella flexneri 2a str. 301]
 gi|30041263|gb|AAP16992.1| threonine tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|73855438|gb|AAZ88145.1| threonine tRNA synthetase [Shigella sonnei Ss046]
 gi|91072507|gb|ABE07388.1| threonyl-tRNA synthetase [Escherichia coli UTI89]
 gi|110343432|gb|ABG69669.1| threonyl-tRNA synthetase [Escherichia coli 536]
 gi|110615019|gb|ABF03686.1| threonine tRNA synthetase [Shigella flexneri 5 str. 8401]
 gi|115513017|gb|ABJ01092.1| threonine tRNA synthetase [Escherichia coli APEC O1]
 gi|169889212|gb|ACB02919.1| threonyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B]
 gi|170517930|gb|ACB16108.1| threonyl-tRNA synthetase [Escherichia coli SMS-3-5]
 gi|188487464|gb|EDU62567.1| threonyl-tRNA synthetase [Escherichia coli 53638]
 gi|190908082|gb|EDV67674.1| threonyl-tRNA synthetase [Escherichia coli F11]
 gi|194416606|gb|EDX32741.1| threonyl-tRNA synthetase [Shigella dysenteriae 1012]
 gi|194422590|gb|EDX38588.1| threonyl-tRNA synthetase [Escherichia coli 101-1]
 gi|215265010|emb|CAS09396.1| threonyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69]
 gi|218365357|emb|CAR03078.1| threonyl-tRNA synthetase [Escherichia coli S88]
 gi|218369700|emb|CAR17469.1| threonyl-tRNA synthetase [Escherichia coli IAI39]
 gi|218427227|emb|CAR08113.2| threonyl-tRNA synthetase [Escherichia coli ED1a]
 gi|218432315|emb|CAR13205.1| threonyl-tRNA synthetase [Escherichia coli UMN026]
 gi|222033474|emb|CAP76215.1| Threonyl-tRNA synthetase [Escherichia coli LF82]
 gi|226900425|gb|EEH86684.1| threonyl-tRNA synthetase [Escherichia sp. 3_2_53FAA]
 gi|238863657|gb|ACR65655.1| threonyl-tRNA synthetase [Escherichia coli BW2952]
 gi|242377442|emb|CAQ32194.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|253324370|gb|ACT28972.1| threonyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253973680|gb|ACT39351.1| threonyl-tRNA synthetase [Escherichia coli B str. REL606]
 gi|253977874|gb|ACT43544.1| threonyl-tRNA synthetase [Escherichia coli BL21(DE3)]
 gi|260449158|gb|ACX39580.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|281600917|gb|ADA73901.1| Threonyl-tRNA synthetase [Shigella flexneri 2002017]
 gi|284921639|emb|CBG34711.1| threonyl-tRNA synthetase [Escherichia coli 042]
 gi|291427426|gb|EFF00453.1| threonyl-tRNA synthetase [Escherichia coli FVEC1412]
 gi|291432685|gb|EFF05664.1| threonyl-tRNA synthetase [Escherichia coli B185]
 gi|291470503|gb|EFF12987.1| threonyl-tRNA synthetase [Escherichia coli B354]
 gi|294493274|gb|ADE92030.1| threonyl-tRNA synthetase [Escherichia coli IHE3034]
 gi|298278303|gb|EFI19817.1| threonyl-tRNA synthetase [Escherichia coli FVEC1302]
 gi|299880135|gb|EFI88346.1| threonyl-tRNA synthetase [Escherichia coli MS 196-1]
 gi|300306094|gb|EFJ60614.1| threonyl-tRNA synthetase [Escherichia coli MS 200-1]
 gi|300400020|gb|EFJ83558.1| threonyl-tRNA synthetase [Escherichia coli MS 69-1]
 gi|300406264|gb|EFJ89802.1| threonyl-tRNA synthetase [Escherichia coli MS 45-1]
 gi|300456146|gb|EFK19639.1| threonyl-tRNA synthetase [Escherichia coli MS 21-1]
 gi|305851676|gb|EFM52129.1| threonyl-tRNA synthetase [Escherichia coli NC101]
 gi|307553740|gb|ADN46515.1| threonine tRNA synthetase [Escherichia coli ABU 83972]
 gi|307626794|gb|ADN71098.1| threonyl-tRNA synthetase [Escherichia coli UM146]
 gi|309701942|emb|CBJ01255.1| threonyl-tRNA synthetase [Escherichia coli ETEC H10407]
 gi|312288385|gb|EFR16287.1| threonyl-tRNA synthetase [Escherichia coli 2362-75]
 gi|315136359|dbj|BAJ43518.1| threonyl-tRNA synthetase [Escherichia coli DH1]
 gi|315286432|gb|EFU45867.1| threonyl-tRNA synthetase [Escherichia coli MS 110-3]
 gi|315290480|gb|EFU49854.1| threonyl-tRNA synthetase [Escherichia coli MS 153-1]
 gi|320181253|gb|EFW56172.1| Threonyl-tRNA synthetase [Shigella boydii ATCC 9905]
 gi|320194570|gb|EFW69201.1| Threonyl-tRNA synthetase [Escherichia coli WV_060327]
 gi|323937321|gb|EGB33600.1| threonyl-tRNA synthetase [Escherichia coli E1520]
 gi|323940615|gb|EGB36806.1| threonyl-tRNA synthetase [Escherichia coli E482]
 gi|323952226|gb|EGB48099.1| threonyl-tRNA synthetase [Escherichia coli H252]
 gi|323956620|gb|EGB52358.1| threonyl-tRNA synthetase [Escherichia coli H263]
 gi|323962102|gb|EGB57698.1| threonyl-tRNA synthetase [Escherichia coli H489]
 gi|323973902|gb|EGB69074.1| threonyl-tRNA synthetase [Escherichia coli TA007]
 gi|323978098|gb|EGB73184.1| threonyl-tRNA synthetase [Escherichia coli TW10509]
 gi|324011501|gb|EGB80720.1| threonyl-tRNA synthetase [Escherichia coli MS 60-1]
 gi|331039114|gb|EGI11334.1| threonine--tRNA ligase [Escherichia coli H736]
 gi|331049217|gb|EGI21289.1| threonine--tRNA ligase [Escherichia coli M718]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|15802131|ref|NP_288153.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 EDL933]
 gi|15831680|ref|NP_310453.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168762217|ref|ZP_02787224.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|168788115|ref|ZP_02813122.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|168800100|ref|ZP_02825107.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|187776029|ref|ZP_02799987.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188024843|ref|ZP_02774486.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189010441|ref|ZP_02807141.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189402338|ref|ZP_02781727.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189403439|ref|ZP_02795487.2| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|208810744|ref|ZP_03252620.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208816647|ref|ZP_03257767.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209400429|ref|YP_002270789.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|217328990|ref|ZP_03445071.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254793336|ref|YP_003078173.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|291282899|ref|YP_003499717.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|22654116|sp|Q8XE27|SYT_ECO57 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238065112|sp|B5YQ07|SYT_ECO5E RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12515733|gb|AAG56706.1|AE005395_2 threonine tRNA synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13361893|dbj|BAB35849.1| threonine tRNA synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|187769425|gb|EDU33269.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196]
 gi|188016225|gb|EDU54347.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113]
 gi|189000290|gb|EDU69276.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076]
 gi|189356196|gb|EDU74615.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401]
 gi|189360618|gb|EDU79037.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486]
 gi|189367509|gb|EDU85925.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501]
 gi|189372060|gb|EDU90476.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869]
 gi|189377572|gb|EDU95988.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508]
 gi|208725260|gb|EDZ74967.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208730990|gb|EDZ79679.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|209161829|gb|ACI39262.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209768828|gb|ACI82726.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768830|gb|ACI82727.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768832|gb|ACI82728.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768834|gb|ACI82729.1| threonine tRNA synthetase [Escherichia coli]
 gi|209768836|gb|ACI82730.1| threonine tRNA synthetase [Escherichia coli]
 gi|217318337|gb|EEC26764.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|254592736|gb|ACT72097.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359]
 gi|290762772|gb|ADD56733.1| Threonyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615]
 gi|320188406|gb|EFW63068.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212]
 gi|320652208|gb|EFX20506.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687]
 gi|320657809|gb|EFX25571.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658384|gb|EFX26078.1| threonyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905]
 gi|326342086|gb|EGD65867.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044]
 gi|326343638|gb|EGD67400.1| Threonyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|323968488|gb|EGB63894.1| threonyl-tRNA synthetase [Escherichia coli M863]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|308173840|ref|YP_003920545.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307606704|emb|CBI43075.1| threonyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+A H+L  A+  +    V      +  +G  +D      IT  +L  IE  +N II+
Sbjct: 75  MRHTAAHVLAQAVKRLYPK-VCLGIGPVIENGFYYDFDMDDTITEKDLPVIEKEMNRIIS 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N  +    ++RE+A    A   L      D  +  +V           LC G H++S G
Sbjct: 134 ENPKITREEISREEAEQLFAHDPLKLELLADIPQTDTVSIYRQSEFVD-LCRGPHLASVG 192

Query: 704 EIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +I    +   S       S +  ++RI       ++  L    + LK    
Sbjct: 193 QIKAFSLTHVSGAYWRGDSNQKMMQRIYGKA-FASKKELNRHFQLLKEAEK 242


>gi|294852343|ref|ZP_06793016.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
 gi|294820932|gb|EFG37931.1| threonyl-tRNA synthetase [Brucella sp. NVSL 07-0026]
          Length = 683

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 61  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 120

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 121 TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 179

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 180 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 234

Query: 722 RIEA 725
           R +A
Sbjct: 235 RGDA 238


>gi|218548710|ref|YP_002382501.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|226701412|sp|B7LQ71|SYT_ESCF3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218356251|emb|CAQ88868.1| threonyl-tRNA synthetase [Escherichia fergusonii ATCC 35469]
 gi|324113470|gb|EGC07445.1| threonyl-tRNA synthetase [Escherichia fergusonii B253]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L    + +  I  ++   L I  HS  HLL HA+  +   H       +  +G  
Sbjct: 45  VDACDLIENDAQLAIITAKDEEGLEIIRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +DV   + +T  +++++E  ++++  +N  V+ + ++  +A  +      G  Y   +  
Sbjct: 104 YDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFVKR--GESYKVSILD 161

Query: 679 VSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAI 726
            ++ ++D  G++       +C G HV +        ++  +       S    ++RI   
Sbjct: 162 ENIAHDDQPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG- 220

Query: 727 TGQRARSHLMGQDEKLKSLAS 747
           T    +  L    ++L+  A 
Sbjct: 221 TAWADKKALNAYLQRLEEAAK 241


>gi|114047517|ref|YP_738067.1| threonyl-tRNA synthetase [Shewanella sp. MR-7]
 gi|123326545|sp|Q0HV45|SYT_SHESR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|113888959|gb|ABI43010.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           MR-7]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 75/198 (37%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  +++++E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDIDLEHKLTQEDIEALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G +Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFAAR--GEEYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        ++S   I     R               +++ L+ +       +  +   
Sbjct: 188 PNMRFCHHFKLMS---IAGAYWR------------GNSENKMLQRIYGTAWADKKALSTH 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  + E  ++      K+
Sbjct: 233 LARLEEAAKRDHRKIGKQ 250


>gi|293556705|ref|ZP_06675269.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
 gi|291601167|gb|EFF31455.1| threonyl-tRNA synthetase [Enterococcus faecium E1039]
          Length = 646

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 3/176 (1%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      +     +    S+ +           + HSA HL+  A+  +  +   
Sbjct: 33  KKALAGKVNGKLVDLTRPIEENASIEIITPDHEDALGLVRHSAAHLMAQAMRRLYPNIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              +T+ +L +IE  +  I+ +NLP+  R++++++A+   A+ 
Sbjct: 93  GVGPAIDSGFYYDTDNGQNQVTAEDLPAIEAEMMKIVKENLPIERRVLSKQEALEIFASD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +    +    V           LC G HV STG I +  ++S   +     R
Sbjct: 153 PYKVELISELPEEEVITAYQQGEFIDLCRGPHVPSTGRIQVFKLLS---VAGAYWR 205


>gi|123442189|ref|YP_001006170.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166225517|sp|A1JMJ9|SYT_YERE8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122089150|emb|CAL11992.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV  ++ +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDINRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDHPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWSDKKQLNAYLQRLEEAAK 241


>gi|320539025|ref|ZP_08038700.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
 gi|320030958|gb|EFW12962.1| threonyl-tRNA synthetase [Serratia symbiotica str. Tucson]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++ +  
Sbjct: 71  MRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIERTLTQEDLDLLEKRMHALAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEASDTFAAR--GESYKVAILDENIGHDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLNAYLQRLEEAAK 241


>gi|154502817|ref|ZP_02039877.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
 gi|153796700|gb|EDN79120.1| hypothetical protein RUMGNA_00631 [Ruminococcus gnavus ATCC 29149]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  +  DG  +DV    P T+ +L+ IE  +  I+
Sbjct: 69  AFRHTASHIMAQAVKRLYPETKLAIGPSV-ADGFYYDVDRETPFTADDLEKIEKEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NLP+      R +AI           Y   +     E E    +S      LC G H+
Sbjct: 128 KENLPIEQFTKPRNEAIEYF--KEKEEPYKVELIEDLPEDETISFYSQGEFTDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESS 715
            ST  +    + S + 
Sbjct: 186 MSTKYVKAFKLTSLAG 201


>gi|109898814|ref|YP_662069.1| threonyl-tRNA synthetase [Pseudoalteromonas atlantica T6c]
 gi|109701095|gb|ABG41015.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Pseudoalteromonas atlantica T6c]
          Length = 638

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+     +   +L  +E  + ++  
Sbjct: 71  IRHSCAHLIGHAIKQLWPDVKMAIGPTID-NGFYYDIDMEHSLNDEDLVKLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSA----LCGGTHV 699
            N  VV ++++ ++A  +  A   G +Y  ++   ++  +   G++       +C G HV
Sbjct: 130 TNYDVVKKVVSWQEARDTFEAR--GEEYKLQILDENIPKDATPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +        ++    +     R ++      R +     +K K L ++L 
Sbjct: 188 PNMRFCQHFKLMK---VAGAYWRGDSDNKMLQRIYGTAWADK-KQLKAYLN 234


>gi|318605898|emb|CBY27396.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDHPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWSDKKQLNAYLQRLEEAAK 241


>gi|118497781|ref|YP_898831.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323753|ref|ZP_03057529.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208779844|ref|ZP_03247188.1| threonyl-tRNA synthetase [Francisella novicida FTG]
 gi|166223342|sp|A0Q762|SYT_FRATN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118423687|gb|ABK90077.1| threonyl-tRNA synthetase [Francisella novicida U112]
 gi|194322117|gb|EDX19599.1| threonyl-tRNA synthetase [Francisella tularensis subsp. novicida
           FTE]
 gi|208744299|gb|EDZ90599.1| threonyl-tRNA synthetase [Francisella novicida FTG]
          Length = 634

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  S     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPSTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQVKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|325497120|gb|EGC94979.1| threonyl-tRNA synthetase [Escherichia fergusonii ECD227]
          Length = 652

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L    + +  I  ++   L I  HS  HLL HA+  +   H       +  +G  
Sbjct: 55  VDACDLIENDAQLAIITAKDEEGLEIIRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFY 113

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +DV   + +T  +++++E  ++++  +N  V+ + ++  +A  +      G  Y   +  
Sbjct: 114 YDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFVKR--GESYKVSILD 171

Query: 679 VSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAI 726
            ++ ++D  G++       +C G HV +        ++  +       S    ++RI   
Sbjct: 172 ENIAHDDQPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG- 230

Query: 727 TGQRARSHLMGQDEKLKSLAS 747
           T    +  L    ++L+  A 
Sbjct: 231 TAWADKKALNAYLQRLEEAAK 251


>gi|288926990|ref|ZP_06420885.1| alpha-amylase family protein [Prevotella buccae D17]
 gi|288336236|gb|EFC74622.1| alpha-amylase family protein [Prevotella buccae D17]
          Length = 712

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +V   A G  ++  I+    +  +    L ++  N+ +    H+A HLL+  +  + G 
Sbjct: 537 VEVDVPAHGGVIYKIIISDKDMNED----LILNGHNKDEFPPAHTAEHLLNRLMMRMFGC 592

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             S+N            V   KP    E K+I D +N +IA++LPV   +++R+      
Sbjct: 593 ERSRNAHIERKKSKISYVLDHKPTRKEE-KAIADEMNRLIAEDLPVTYEMVDRDHIPEGV 651

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               L     +++R+V +     G +    C G HV STG+I    ++ 
Sbjct: 652 TLDRLPDTAGEKLRLVRI-----GDYDVCPCIGKHVRSTGQIGRFELLG 695


>gi|253688275|ref|YP_003017465.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259516611|sp|C6DFY6|SYT_PECCP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251754853|gb|ACT12929.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIELLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 TDYDVIKKKVSWQEARDAFAAR--GETYKMAILDENISRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLASYLQRLEEAAK 241


>gi|213623005|ref|ZP_03375788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 523

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|315608749|ref|ZP_07883727.1| alpha-amylase [Prevotella buccae ATCC 33574]
 gi|315249599|gb|EFU29610.1| alpha-amylase [Prevotella buccae ATCC 33574]
          Length = 712

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 10/169 (5%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
            +V   A G  ++  I+    +  +    L ++  N+ +    H+A HLL+  +  + G 
Sbjct: 537 VEVDVPAHGGVIYKIIISDKDMNED----LILNGHNKDEFPPAHTAEHLLNRLMMRMFGC 592

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
             S+N            V   KP    E K+I D +N +IA++LPV   +++R+      
Sbjct: 593 ERSRNAHIERKKSKISYVLDHKPTRKEE-KAIADEMNRLIAEDLPVTYEMVDRDHIPEGV 651

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               L     +++R+V +     G +    C G HV STG+I    ++ 
Sbjct: 652 TLDRLPDTAGEKLRLVRI-----GDYDVCPCIGKHVRSTGQIGRFELLG 695


>gi|237731269|ref|ZP_04561750.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
 gi|226906808|gb|EEH92726.1| threonyl-tRNA synthetase [Citrobacter sp. 30_2]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +D+   + +T  ++ ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDIDLDRTLTQEDVDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWYEARETFVKR--GETYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|167040680|ref|YP_001663665.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307724045|ref|YP_003903796.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
 gi|166854920|gb|ABY93329.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X514]
 gi|307581106|gb|ADN54505.1| threonyl-tRNA synthetase [Thermoanaerobacter sp. X513]
          Length = 634

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 98/240 (40%), Gaps = 25/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ +++AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTDRPFTTEDFEAIEQEMNKIIKEDYKLERFVLPKDEAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              G  Y   +     E E+   +       LC G H+ STG +  + ++S         
Sbjct: 148 EEKGEPYKVELIEEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLS--------- 198

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
               + G  A      +++ L+ +       + +++ +   + EE +K       ++L L
Sbjct: 199 ----VAG--AYWKGDEKNKMLQRIYGI-SFPKKSMLDQYLHMLEEAKKRDHRKLGKELDL 251


>gi|308049557|ref|YP_003913123.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
 gi|307631747|gb|ADN76049.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Ferrimonas
           balearica DSM 9799]
          Length = 644

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 74/198 (37%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+     +T  ++ ++E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPETKMAIGPVID-NGFYYDIDLEHKLTQEDIDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ ++++ ++A  +  A   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 TNYDVIKKVVSWQEARDTFEAR--GETYKMEILDENISRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        ++   ++     R                ++ L+ +       +  +   
Sbjct: 188 PNMRHCHHFKLM---NVAGAYWR------------GNSDNKMLQRIYGTAWADKKQLKAY 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           ++ + E  ++      K 
Sbjct: 233 LQRLEEAAKRDHRKIGKA 250


>gi|90410628|ref|ZP_01218644.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
 gi|90328869|gb|EAS45153.1| threonyl-tRNA synthetase [Photobacterium profundum 3TCK]
          Length = 426

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+   + +T  ++ +IE  + +++ 
Sbjct: 71  IRHSCAHLLGHAIKQLYPEAKMAIGPTID-NGFYYDIDLEQSLTQDDVDAIEKRMKELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
               VV + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV
Sbjct: 130 TKYAVVKKKVSWQEARDAFEAR--GETYKIEILDENVSRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            + G      ++S   +     R
Sbjct: 188 PNMGFCQHFKLLS---VAGAYWR 207


>gi|238924616|ref|YP_002938132.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
 gi|238876291|gb|ACR75998.1| threonyl-tRNA synthetase [Eubacterium rectale ATCC 33656]
          Length = 676

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H+L  A+  +        G  I  DG  +D   S+P +  +L ++E  +  II 
Sbjct: 89  IRHTASHVLAQAVKNLFPDAKITIGPAID-DGFYYDFD-SQPFSREDLDALEAEMKKIIK 146

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           Q   +    + RE+AI           Y   +     E E+   +       LC G H+ 
Sbjct: 147 QGHEITRFTLPREEAIKF--MKEKDEPYKVELIEELPEGEEISFYDQGGFVDLCAGPHLM 204

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           ST  +    + + S       S +A + RI      + +  L    E+++    
Sbjct: 205 STKGVKAFKLTASSMAYWRGDSNKARLHRIYGTAYNK-KEDLKAHLERMEEAKK 257


>gi|238756889|ref|ZP_04618077.1| Alanyl-tRNA synthetase-related protein [Yersinia aldovae ATCC
           35236]
 gi|238704719|gb|EEP97248.1| Alanyl-tRNA synthetase-related protein [Yersinia aldovae ATCC
           35236]
          Length = 210

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 37/233 (15%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +     ++      ++  V+ + T F+ + GGQ  DTG   G    L++  VQ++   + 
Sbjct: 14  LTTDVNVLSCTPDNEQFAVIVEATIFHPQGGGQPSDTGWI-GTSQVLRV--VQQQDHLLH 70

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                V  G            D + R   +  HSA HL+ +         V    +   P
Sbjct: 71  YLQQPVTLGWHP------ACTDSERRFLNTRMHSAGHLIGNIGERYGWLPV---KAHHWP 121

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              R     ++ +   ++  I+  +   I+Q+L     +                     
Sbjct: 122 GEGRVSFKRAENVQPIDINIIQSALQQFISQDLRRQISV--------------------- 160

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           +     V + D   +    CGGTHVSS  E+  + + S S  + GI  +  I 
Sbjct: 161 QGDFREVGFGDLPAY---ACGGTHVSSLRELGHVSVQSISE-KKGIMSVNYIV 209


>gi|40062682|gb|AAR37595.1| threonyl-tRNA synthetase [uncultured marine bacterium 314]
          Length = 638

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 13/194 (6%)

Query: 537 DGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ--LSINHSATHL 592
           DG  +  +I+    K   I   +  +       +  + + I  +  ++    I H A H+
Sbjct: 19  DGFEIAKKISKSLAKDACIMSVNGKLRDLSFSIDNDVQVKIITKKDKEGLEVIRHDAAHV 78

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  A+  +        G  I  DG  +D +  +  T  +LK IE+ + +I+ ++ P    
Sbjct: 79  LAMAVQELFPGTQVTIGPVI-KDGFYYDFSRKETFTDEDLKKIENKMKEIVDRDEPTKRE 137

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVSSTGEIMLL 708
           +  R +AI       +G  Y   +     + E+  ++       LC G H+ STG+I   
Sbjct: 138 VWKRNEAINHF--KKIGEHYKAEIIEDIPKNEELSIYHHGKWHDLCKGPHLPSTGKIG-- 193

Query: 709 YIVSESSIRAGIRR 722
                + +     R
Sbjct: 194 KAFKLTKVSGAYWR 207


>gi|282916943|ref|ZP_06324701.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283770747|ref|ZP_06343639.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
 gi|282319430|gb|EFB49782.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139]
 gi|283460894|gb|EFC07984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|172087694|ref|YP_204597.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197335357|ref|YP_002156016.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
 gi|171902287|gb|AAW85709.2| threonyl-tRNA synthetase [Vibrio fischeri ES114]
 gi|197316847|gb|ACH66294.1| threonyl-tRNA synthetase [Vibrio fischeri MJ11]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+     +T  +L  IE  + D+  
Sbjct: 71  IRHSCAHLLGHAVKQLFPEAKMAIGPTID-NGFYYDIDMEHSLTQEDLDKIEKRMKDLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
               V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV
Sbjct: 130 TKYQVIKKNVSWQEARDTFEAR--GETYKIEILDENVSKDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        I+   ++     R
Sbjct: 188 PNMSFCQNFKIL---NVAGAYWR 207


>gi|329733112|gb|EGG69449.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|260774298|ref|ZP_05883213.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260611259|gb|EEX36463.1| threonyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I   G  +D+     ++  +L+ IE  + D++  
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-SGFYYDIDLDHSLSQEDLERIEQRMKDLVKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV   ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKHKVSWQEARDTFESR--GEPYKIEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++S   +     R
Sbjct: 190 HMGFCQHFKLLS---VAGAYWR 208


>gi|158422571|ref|YP_001523863.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
 gi|158329460|dbj|BAF86945.1| threonyl-tRNA synthetase [Azorhizobium caulinodans ORS 571]
          Length = 636

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 11/166 (6%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              +  +  + +      R    I H A H+L  A+  +        G  I  +G  +D 
Sbjct: 26  SEPITKDARIEIVTRDDPRALELIRHDAAHVLAEAVQELFPGTQVTIGPVI-ENGFYYDF 84

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
             ++P T+ +L  IE  + +IIA++ P    + +R++A         G  +   +     
Sbjct: 85  ARNEPFTTDDLPKIEAKMKEIIARDKPFTKEVWSRDEAKR--VFRDKGEAFKVELVDAIP 142

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           E +D  ++       LC G H+ STG+I     ++    +     R
Sbjct: 143 EDQDVKIYKQGEWFDLCRGPHMPSTGKIGTAFKLMK---VAGAYWR 185


>gi|15615703|ref|NP_244007.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
 gi|20139931|sp|Q9K866|SYT_BACHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10175763|dbj|BAB06860.1| threonyl-tRNA synthetase 1 [Bacillus halodurans C-125]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  H++  AL  +    +V      +   G  +DV   + +T  +L  IE  +  II
Sbjct: 74  LRHSTAHVMAQALKRLFKDRNVKLGVGPVIEGGFYYDVDMDESLTPEDLPKIEKEMKKII 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NLP+   +++RE+A+A      +G  Y   +     E E   ++       LC G HV
Sbjct: 134 GENLPIERVVVSREEALARYE--EVGDPYKIELINDLPEDETITIYEQGEFFDLCRGVHV 191

Query: 700 SSTGEIMLLYIVSESS 715
            STG++    +++ + 
Sbjct: 192 PSTGKLKEFKLLNLAG 207


>gi|314933837|ref|ZP_07841202.1| threonine--tRNA ligase [Staphylococcus caprae C87]
 gi|313653987|gb|EFS17744.1| threonine--tRNA ligase [Staphylococcus caprae C87]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 74/195 (37%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L  + S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQMVDLTRPLEEDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  +   G  +D    + ++S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVV-EGGFYYDFDMDEKVSSDDFEKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +  ++++R++A            Y   +     E E   ++S      LC G HV 
Sbjct: 132 ENYKIERKVVSRDEAKEFF----KDDPYKLELIDAIPEDESVTLYSQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|148560208|ref|YP_001259002.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
 gi|148371465|gb|ABQ61444.1| threonyl-tRNA synthetase [Brucella ovis ATCC 25840]
          Length = 693

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 71  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 130

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 131 TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMCEIIQRNKPFTKEVWSREKAKQVFSDK 189

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 190 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 244

Query: 722 RIEA 725
           R +A
Sbjct: 245 RGDA 248


>gi|301327449|ref|ZP_07220684.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|309793489|ref|ZP_07687916.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|312969746|ref|ZP_07783929.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
 gi|300845961|gb|EFK73721.1| threonyl-tRNA synthetase [Escherichia coli MS 78-1]
 gi|308123076|gb|EFO60338.1| threonyl-tRNA synthetase [Escherichia coli MS 145-7]
 gi|310338031|gb|EFQ03120.1| threonyl-tRNA synthetase [Escherichia coli 1827-70]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|332161611|ref|YP_004298188.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665841|gb|ADZ42485.1| threonyl-tRNA synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDHPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWSDKKQLNAYLQRLEEAAK 241


>gi|170768863|ref|ZP_02903316.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
 gi|170122411|gb|EDS91342.1| threonyl-tRNA synthetase [Escherichia albertii TW07627]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDQPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|56413681|ref|YP_150756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362604|ref|YP_002142241.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|73919824|sp|Q5PH96|SYT_SALPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689908|sp|B5BA42|SYT_SALPK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56127938|gb|AAV77444.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094081|emb|CAR59581.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|16760562|ref|NP_456179.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141677|ref|NP_805019.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167552305|ref|ZP_02346058.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168239001|ref|ZP_02664059.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168821978|ref|ZP_02833978.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194736705|ref|YP_002114350.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197251550|ref|YP_002146704.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|200390235|ref|ZP_03216846.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204927743|ref|ZP_03218944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213423451|ref|ZP_03356434.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426331|ref|ZP_03359081.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852224|ref|ZP_03381756.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238910851|ref|ZP_04654688.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|22654121|sp|Q8Z6I2|SYT_SALTI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690055|sp|B5F7G2|SYT_SALA4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693694|sp|B4TUF0|SYT_SALSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25292951|pir||AC0706 threonine-tRNA ligase (EC 6.1.1.3) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502858|emb|CAD02020.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137305|gb|AAO68868.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194712207|gb|ACF91428.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197215253|gb|ACH52650.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197288252|gb|EDY27637.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199602680|gb|EDZ01226.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323085|gb|EDZ08281.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323017|gb|EDZ10856.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205341550|gb|EDZ28314.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086187|emb|CBY95961.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322620023|gb|EFY16896.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622333|gb|EFY19178.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627857|gb|EFY24647.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633045|gb|EFY29788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636709|gb|EFY33412.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641265|gb|EFY37906.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645254|gb|EFY41783.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650195|gb|EFY46609.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655769|gb|EFY52071.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660095|gb|EFY56334.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665338|gb|EFY61526.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669596|gb|EFY65744.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673522|gb|EFY69624.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677448|gb|EFY73512.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679887|gb|EFY75926.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687359|gb|EFY83331.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192477|gb|EFZ77707.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198668|gb|EFZ83769.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204096|gb|EFZ89110.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208715|gb|EFZ93653.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210228|gb|EFZ95127.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217691|gb|EGA02406.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220245|gb|EGA04700.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223489|gb|EGA07815.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229493|gb|EGA13616.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232716|gb|EGA16812.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240245|gb|EGA24289.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242767|gb|EGA26788.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249083|gb|EGA33002.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254416|gb|EGA38233.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255600|gb|EGA39356.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260123|gb|EGA43748.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267113|gb|EGA50598.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271563|gb|EGA54984.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|309788453|ref|ZP_07683057.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
 gi|308923835|gb|EFP69338.1| threonyl-tRNA synthetase [Shigella dysenteriae 1617]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|282906079|ref|ZP_06313934.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282331371|gb|EFB60885.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Btn1260]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|163782015|ref|ZP_02177014.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882547|gb|EDP76052.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 641

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 76/206 (36%), Gaps = 20/206 (9%)

Query: 528 LGDTGCAIGDGIRLQITD------------VQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           + D    + +G  +++              ++    G      I  +  +     +    
Sbjct: 3   VKDKVRVVIEGKEVEVEKGTTLGEIFEKAGIKDALGGKLGDRIIDLQTPINEGGEIKPIY 62

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVT-HSKPITSAELK 633
                    + HS  H++  AL  + G+ V   G    T +G  +DV      IT  +L 
Sbjct: 63  KNDPESLEIMRHSLAHIMAQALKELYGAEVVHLGVGPTTEEGFYYDVEVEGHRITEEDLP 122

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
            IE+ + +II ++ P++ + + R++AI       L  KY   +       +   V+    
Sbjct: 123 KIEEKMREIIKRDYPILRKELERDEAIKLFND--LKEKYKIDIIQRISPEDVISVYQQGD 180

Query: 692 --ALCGGTHVSSTGEIMLLYIVSESS 715
              LC G H+ STG+     + S S 
Sbjct: 181 FIDLCRGPHLPSTGKAGSFKLTSISG 206


>gi|21283355|ref|NP_646443.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2]
 gi|49483925|ref|YP_041149.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486509|ref|YP_043730.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650554|ref|YP_186567.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87161367|ref|YP_494324.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|148268163|ref|YP_001247106.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394230|ref|YP_001316905.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|151221788|ref|YP_001332610.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|161509896|ref|YP_001575555.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142567|ref|ZP_03567060.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317174|ref|ZP_04840387.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253732334|ref|ZP_04866499.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734533|ref|ZP_04868698.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257425798|ref|ZP_05602222.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428464|ref|ZP_05604862.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431098|ref|ZP_05607475.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433781|ref|ZP_05610139.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436697|ref|ZP_05612741.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257794068|ref|ZP_05643047.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|258415772|ref|ZP_05682043.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|258421991|ref|ZP_05684911.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|258424099|ref|ZP_05686981.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|258438251|ref|ZP_05689535.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|258443709|ref|ZP_05692048.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|258445920|ref|ZP_05694096.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|258448399|ref|ZP_05696516.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|258451803|ref|ZP_05699825.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|258454120|ref|ZP_05702091.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|269203301|ref|YP_003282570.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893178|ref|ZP_06301412.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|282904254|ref|ZP_06312142.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282908994|ref|ZP_06316812.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911310|ref|ZP_06319112.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914479|ref|ZP_06322265.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282919448|ref|ZP_06327183.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282920223|ref|ZP_06327948.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282924825|ref|ZP_06332491.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282927813|ref|ZP_06335424.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|283958434|ref|ZP_06375885.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024731|ref|ZP_06379129.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132]
 gi|293503557|ref|ZP_06667404.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510572|ref|ZP_06669277.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|293537114|ref|ZP_06671794.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|294848704|ref|ZP_06789450.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|295405993|ref|ZP_06815801.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295428254|ref|ZP_06820883.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296274890|ref|ZP_06857397.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207604|ref|ZP_06924039.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245081|ref|ZP_06928958.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297590783|ref|ZP_06949421.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911686|ref|ZP_07129130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380726|ref|ZP_07363395.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|38258392|sp|Q8NW68|SYT_STAAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749381|sp|Q6G8P3|SYT_STAAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56749410|sp|Q6GG23|SYT_STAAR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71153575|sp|Q5HF90|SYT_STAAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123735974|sp|Q2FG54|SYT_STAA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|172048941|sp|A6QHL6|SYT_STAAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083625|sp|A6U2F0|SYT_STAA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083626|sp|A5ITK7|SYT_STAA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083627|sp|A8Z2J8|SYT_STAAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38492559|pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492560|pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With An Analogue Of Threonyl
           Adenylate
 gi|38492561|pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|38492562|pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
           Synthetase Complexed With Atp
 gi|21204795|dbj|BAB95491.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242054|emb|CAG40753.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244952|emb|CAG43413.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284740|gb|AAW36834.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL]
 gi|87127341|gb|ABD21855.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|147741232|gb|ABQ49530.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946682|gb|ABR52618.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1]
 gi|150374588|dbj|BAF67848.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|160368705|gb|ABX29676.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723934|gb|EES92663.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727474|gb|EES96203.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271492|gb|EEV03638.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275305|gb|EEV06792.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278046|gb|EEV08694.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281874|gb|EEV12011.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284048|gb|EEV14171.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876]
 gi|257788040|gb|EEV26380.1| threonyl-tRNA synthetase [Staphylococcus aureus A9781]
 gi|257839365|gb|EEV63838.1| threonyl-tRNA synthetase [Staphylococcus aureus A9763]
 gi|257842035|gb|EEV66464.1| threonyl-tRNA synthetase [Staphylococcus aureus A9719]
 gi|257845720|gb|EEV69752.1| threonyl-tRNA synthetase [Staphylococcus aureus A9635]
 gi|257848295|gb|EEV72286.1| threonyl-tRNA synthetase [Staphylococcus aureus A9299]
 gi|257851115|gb|EEV75058.1| threonyl-tRNA synthetase [Staphylococcus aureus A8115]
 gi|257855162|gb|EEV78101.1| threonyl-tRNA synthetase [Staphylococcus aureus A6300]
 gi|257858367|gb|EEV81252.1| threonyl-tRNA synthetase [Staphylococcus aureus A6224]
 gi|257860515|gb|EEV83341.1| threonyl-tRNA synthetase [Staphylococcus aureus A5948]
 gi|257863572|gb|EEV86329.1| threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase [Staphylococcus
           aureus A5937]
 gi|262075591|gb|ACY11564.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98]
 gi|269941163|emb|CBI49550.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20]
 gi|282313191|gb|EFB43587.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101]
 gi|282317258|gb|EFB47632.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427]
 gi|282321660|gb|EFB51985.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M899]
 gi|282325005|gb|EFB55315.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327258|gb|EFB57553.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282590323|gb|EFB95402.1| threonyl-tRNA synthetase [Staphylococcus aureus A10102]
 gi|282594571|gb|EFB99556.1| threonyl-tRNA synthetase [Staphylococcus aureus A9765]
 gi|282595872|gb|EFC00836.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus C160]
 gi|282764496|gb|EFC04622.1| threonyl-tRNA synthetase [Staphylococcus aureus A8117]
 gi|283790583|gb|EFC29400.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817366|gb|ADC37853.1| Threonyl-tRNA synthetase [Staphylococcus aureus 04-02981]
 gi|290919959|gb|EFD97027.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095223|gb|EFE25488.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466463|gb|EFF08984.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809]
 gi|294824730|gb|EFG41153.1| threonyl-tRNA synthetase [Staphylococcus aureus A9754]
 gi|294968990|gb|EFG45011.1| threonyl-tRNA synthetase [Staphylococcus aureus A8819]
 gi|295127654|gb|EFG57291.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887621|gb|EFH26519.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297178161|gb|EFH37409.1| threonyl-tRNA synthetase [Staphylococcus aureus A8796]
 gi|297575669|gb|EFH94385.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8]
 gi|300887107|gb|EFK82308.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333348|gb|ADL23541.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751509|gb|ADL65686.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340725|gb|EFM06656.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312437859|gb|ADQ76930.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830061|emb|CBX34903.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130684|gb|EFT86670.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195587|gb|EFU25974.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198621|gb|EFU28949.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140439|gb|EFW32293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143977|gb|EFW35746.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314355|gb|AEB88768.1| Threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329727674|gb|EGG64130.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|332179059|gb|AEE14748.1| threonyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796]
          Length = 606

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 105/266 (39%), Gaps = 32/266 (12%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           V+    R   SL    D        + HSA HLL  A+  +        G  I  +G  +
Sbjct: 14  VDFRDYREGESLKPVTDKDKESLDVLRHSAAHLLAQAVKELFPETKLAIGPSI-ENGFYY 72

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           D+   +P T  +L+ IE  + +I  ++L +    + +EDAI     + L   Y   + + 
Sbjct: 73  DIYRKEPFTPEDLEIIEKKMKEIAQRDLEITKMCLKKEDAIKLF--SDLKEDYKLEL-IK 129

Query: 680 SVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
            +  +D  ++       LC G H+SSTG+I    ++   ++     R             
Sbjct: 130 DIPDDDVCIYKQGNFIDLCRGPHLSSTGQIKHFKLL---NVAGAYWR------------G 174

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
             + E L+ +      ++ ++   +  + E Y++      K        +L  + +AD  
Sbjct: 175 DEKREMLQRIYGTAFWTEEDLKNHLNWLEEVYKRDHRKLGK--------ELDLYSMADEV 226

Query: 796 FMSHIISEVDSKELKSVM-DALQKKI 820
               I+   +   +++++ D L+K+ 
Sbjct: 227 GAGLILWHPNGGVIRTIIEDYLRKEH 252


>gi|262052254|ref|ZP_06024459.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
 gi|259159855|gb|EEW44894.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus 930918-3]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|254706742|ref|ZP_05168570.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261314206|ref|ZP_05953403.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
 gi|261303232|gb|EEY06729.1| threonyl-tRNA synthetase [Brucella pinnipedialis M163/99/10]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|254374591|ref|ZP_04990072.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
 gi|151572310|gb|EDN37964.1| threonyl-tRNA synthetase [Francisella novicida GA99-3548]
          Length = 634

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQVKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|300904575|ref|ZP_07122412.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|300403488|gb|EFJ87026.1| threonyl-tRNA synthetase [Escherichia coli MS 84-1]
 gi|315257476|gb|EFU37444.1| threonyl-tRNA synthetase [Escherichia coli MS 85-1]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|298694953|gb|ADI98175.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|323440773|gb|EGA98482.1| threonyl-tRNA synthetase [Staphylococcus aureus O11]
 gi|323442928|gb|EGB00551.1| threonyl-tRNA synthetase [Staphylococcus aureus O46]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|291085451|ref|ZP_06353132.2| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
 gi|291071041|gb|EFE09150.1| threonine--tRNA ligase [Citrobacter youngae ATCC 29220]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +D+   + +T  ++ ++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDIDLDRTLTQEDVDALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWYEARETFVKR--GETYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|300818358|ref|ZP_07098568.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|300821407|ref|ZP_07101554.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300525910|gb|EFK46979.1| threonyl-tRNA synthetase [Escherichia coli MS 119-7]
 gi|300528998|gb|EFK50060.1| threonyl-tRNA synthetase [Escherichia coli MS 107-1]
 gi|323158484|gb|EFZ44500.1| threonyl-tRNA synthetase [Escherichia coli E128010]
 gi|323175213|gb|EFZ60827.1| threonyl-tRNA synthetase [Escherichia coli LT-68]
 gi|323180497|gb|EFZ66042.1| threonyl-tRNA synthetase [Escherichia coli 1180]
 gi|323186265|gb|EFZ71617.1| threonyl-tRNA synthetase [Escherichia coli 1357]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|17987198|ref|NP_539832.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|256044731|ref|ZP_05447635.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564073|ref|ZP_05834559.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|265991152|ref|ZP_06103709.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
 gi|22654120|sp|Q8YH89|SYT_BRUME RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|17982868|gb|AAL52096.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|260154089|gb|EEW89181.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M]
 gi|263001936|gb|EEZ14511.1| threonyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|209966088|ref|YP_002299003.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
 gi|238065118|sp|B6IV67|SYT_RHOCS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209959554|gb|ACJ00191.1| threonyl-tRNA synthetase ThrS [Rhodospirillum centenum SW]
          Length = 651

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I   G  +D   S+P T  +L  IE  +++I+ 
Sbjct: 71  IRHDAAHIMAEAVQALYPGTQVTIGPAIAT-GFYYDFARSEPFTPDDLVKIEAKMHEIVN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            + P    +  R+DAI    +  +G KY  ++       E   ++       LC G H+ 
Sbjct: 130 ADAPFTREVWKRDDAIEHFRS--IGEKYKAQIIEDLPATETITIYRQGRWYDLCRGPHLP 187

Query: 701 STGEIML-LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           STG++     ++    +     R +A      R +      + K LA  L
Sbjct: 188 STGKVGHAFKLMK---VAGAYWRGDARNEMLQRIYGTAWRTE-KELADHL 233


>gi|254373138|ref|ZP_04988627.1| threonine-tRNA ligase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570865|gb|EDN36519.1| threonine-tRNA ligase [Francisella novicida GA99-3549]
          Length = 634

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQVKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|322514773|ref|ZP_08067797.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
 gi|322119269|gb|EFX91397.1| threonine--tRNA ligase [Actinobacillus ureae ATCC 25976]
          Length = 653

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 81  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLELAK 139

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
            N  V+ + ++ +DA  +      G  Y      + +   ++           +C G HV
Sbjct: 140 TNYDVMKKRVSWQDARDTFEKR--GEPYKMAILDENIERTAMPALYHHEEYIDMCRGPHV 197

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 198 PNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 252


>gi|321313312|ref|YP_004205599.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
 gi|320019586|gb|ADV94572.1| threonyl-tRNA synthetase [Bacillus subtilis BSn5]
          Length = 638

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K A G      +     L  +  L ++T+D Q   Q+   H+  H+L  A+  + G  V
Sbjct: 36  KKAAAGQVNGKLVDLSFKLEEDAKLSIVTLDSQEGLQVLR-HTTVHVLVQAVKRLYGE-V 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA- 664
           S     +  DG  +D+   K + S +L++IE  +  II +NL +    ++ E+A    A 
Sbjct: 94  SLGVGPVIEDGFYYDMKLGKSLASGDLEAIEKEMEHIINENLEIKRMEVSYEEAEELFAQ 153

Query: 665 --AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               L      D  R   +     G     LC G H+ STG I    +   S 
Sbjct: 154 KGERLKLEILKDIPRGEDITLYQQGEFVD-LCRGPHLPSTGMIKAFKLTRVSG 205


>gi|256159790|ref|ZP_05457533.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|256255048|ref|ZP_05460584.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|261222239|ref|ZP_05936520.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|265998203|ref|ZP_06110760.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
 gi|260920823|gb|EEX87476.1| threonyl-tRNA synthetase [Brucella ceti B1/94]
 gi|262552671|gb|EEZ08661.1| threonyl-tRNA synthetase [Brucella ceti M490/95/1]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|326538797|gb|ADZ87012.1| threonyl-tRNA synthetase [Brucella melitensis M5-90]
          Length = 661

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 39  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 98

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 99  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 157

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 158 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 212

Query: 722 RIEA 725
           R +A
Sbjct: 213 RGDA 216


>gi|297569216|ref|YP_003690560.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925131|gb|ADH85941.1| threonyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 646

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 22/226 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L +   + +           + HSA H++  A+  + G  V       T DG  +D   
Sbjct: 52  PLNSGGEVAVITPESPEALEILRHSAAHVMAEAVLELYGDEVQVTIGPATADGFYYDFDR 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T A+L+ IE  + +I   + P   R ++R +A+        G  Y   + +  +E 
Sbjct: 112 QQPFTPADLEKIEALMAEIATADRPFERREVSRAEALEFF--RQQGQNYKLEL-LDEIED 168

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           +   ++S      LC G H+ STG +    +     +     R                +
Sbjct: 169 DQVSLYSQGNFVDLCRGPHLPSTGWLKAFKLT---RLAGAYWR------------GDENN 213

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
             L+ +       +  +   +E + E  ++      K      ++D
Sbjct: 214 RMLQRIYGTAFFDKKELRAYLERLEEAKKRDHRKLGKELELFTIQD 259


>gi|195937403|ref|ZP_03082785.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024]
 gi|261227789|ref|ZP_05942070.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258046|ref|ZP_05950579.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|320641567|gb|EFX10955.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101]
 gi|320646926|gb|EFX15759.1| threonyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89]
 gi|320668281|gb|EFX35108.1| threonyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|291525280|emb|CBK90867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale DSM 17629]
 gi|291529262|emb|CBK94848.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           rectale M104/1]
          Length = 657

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H+L  A+  +        G  I  DG  +D   S+P +  +L ++E  +  II 
Sbjct: 70  IRHTASHVLAQAVKNLFPDAKITIGPAID-DGFYYDFD-SQPFSREDLDALEAEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           Q   +    + RE+AI           Y   +     E E+   +       LC G H+ 
Sbjct: 128 QGHEITRFTLPREEAIKF--MKEKDEPYKVELIEELPEGEEISFYDQGGFVDLCAGPHLM 185

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           ST  +    + + S       S +A + RI      + +  L    E+++    
Sbjct: 186 STKGVKAFKLTASSMAYWRGDSNKARLHRIYGTAYNK-KEDLKAHLERMEEAKK 238


>gi|290475547|ref|YP_003468435.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
 gi|289174868|emb|CBJ81669.1| threonine tRNA synthetase [Xenorhabdus bovienii SS-2004]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  + ++  
Sbjct: 71  IRHSCAHLLGHAVKQLWPDTKMAIGPVID-NGFYYDVDLDRSLTQEDIELLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  V+ + ++ ++A  + AA   G +Y  ++   ++  +D  G++       +C G HV
Sbjct: 130 TDYDVIKKKVSWQEAREAFAAR--GEEYKIQILDENISRDDYPGLYHHEEYMDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     I     R
Sbjct: 188 PNMRFCHHFKL---QKIAGAYWR 207


>gi|212704422|ref|ZP_03312550.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
 gi|212672143|gb|EEB32626.1| hypothetical protein DESPIG_02477 [Desulfovibrio piger ATCC 29098]
          Length = 648

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 27/179 (15%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS  H++  A+  +  S     G  +  +G  +D    KP +S +  +IE  +  I+
Sbjct: 74  MIRHSTAHVMAAAVKKLYPSAKVTIGPAV-ENGFYYDFDVEKPFSSEDFPAIEAEMQRIV 132

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-------G 696
            + LP V   M++ DAI         +K  +  +V  +E  +G   S   CG       G
Sbjct: 133 NERLPFVRTTMSKADAIEKF------SKMGENFKVEIIEGIEGDTVSLYTCGDFTDLCRG 186

Query: 697 THVSSTGEIMLLYIVSESSIRAGIR---------RIE--AITGQRARSHLMGQDEKLKS 744
            HV  TG      I+S  +  A  R         R+   A   ++A +  + Q E+ K 
Sbjct: 187 PHVPHTGFSKASKILS--AAGAYWRGDEKNPMLSRLYGTAFADEKALNAYLKQLEEAKR 243


>gi|227885859|ref|ZP_04003664.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300898493|ref|ZP_07116830.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300917719|ref|ZP_07134368.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300930805|ref|ZP_07146177.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|300951319|ref|ZP_07165163.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300958608|ref|ZP_07170733.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|301050944|ref|ZP_07197793.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|301647910|ref|ZP_07247687.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|227837432|gb|EEJ47898.1| threonine--tRNA ligase [Escherichia coli 83972]
 gi|300297398|gb|EFJ53783.1| threonyl-tRNA synthetase [Escherichia coli MS 185-1]
 gi|300314733|gb|EFJ64517.1| threonyl-tRNA synthetase [Escherichia coli MS 175-1]
 gi|300357845|gb|EFJ73715.1| threonyl-tRNA synthetase [Escherichia coli MS 198-1]
 gi|300415120|gb|EFJ98430.1| threonyl-tRNA synthetase [Escherichia coli MS 115-1]
 gi|300449416|gb|EFK13036.1| threonyl-tRNA synthetase [Escherichia coli MS 116-1]
 gi|300461363|gb|EFK24856.1| threonyl-tRNA synthetase [Escherichia coli MS 187-1]
 gi|301073967|gb|EFK88773.1| threonyl-tRNA synthetase [Escherichia coli MS 146-1]
 gi|312946320|gb|ADR27147.1| threonyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313649261|gb|EFS13695.1| threonyl-tRNA synthetase [Shigella flexneri 2a str. 2457T]
 gi|315618916|gb|EFU99499.1| threonyl-tRNA synthetase [Escherichia coli 3431]
 gi|323169354|gb|EFZ55030.1| threonyl-tRNA synthetase [Shigella sonnei 53G]
 gi|323186901|gb|EFZ72219.1| threonyl-tRNA synthetase [Escherichia coli RN587/1]
 gi|324007092|gb|EGB76311.1| threonyl-tRNA synthetase [Escherichia coli MS 57-2]
 gi|332090644|gb|EGI95739.1| threonyl-tRNA synthetase [Shigella boydii 5216-82]
 gi|332093917|gb|EGI98970.1| threonyl-tRNA synthetase [Shigella dysenteriae 155-74]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|33240514|ref|NP_875456.1| threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|73919816|sp|Q7VBM8|SYT_PROMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33238042|gb|AAQ00109.1| Threonyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 643

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+ +    +  +L  IE  + ++I 
Sbjct: 71  IRHSFAHLLGHAIKQLYPDAKMAIGPVI-ENGFYYDIAYKDTFSLDDLNQIELRIKELIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV   +++E A  +         Y  ++     + E   ++       +C G HV 
Sbjct: 130 QDYDVVVEEVSKEKARKTFLDR--DEAYKVQIIDEIPDNETIKLYKHQEYIDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESS 715
           +T  +    ++  S 
Sbjct: 188 NTKHLRAFSLMKVSG 202


>gi|326409092|gb|ADZ66157.1| threonyl-tRNA synthetase [Brucella melitensis M28]
          Length = 660

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 38  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 97

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 98  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 156

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 157 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 211

Query: 722 RIEA 725
           R +A
Sbjct: 212 RGDA 215


>gi|261752375|ref|ZP_05996084.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
 gi|261742128|gb|EEY30054.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 660

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 38  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 97

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 98  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 156

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 157 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 211

Query: 722 RIEA 725
           R +A
Sbjct: 212 RGDA 215


>gi|256113621|ref|ZP_05454441.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|265994988|ref|ZP_06107545.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
 gi|262766101|gb|EEZ11890.1| threonyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|254693779|ref|ZP_05155607.1| threonyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261214058|ref|ZP_05928339.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
 gi|260915665|gb|EEX82526.1| threonine-tRNA ligase [Brucella abortus bv. 3 str. Tulya]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|225852573|ref|YP_002732806.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|256263936|ref|ZP_05466468.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
 gi|254783511|sp|C0RJ44|SYT_BRUMB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225640938|gb|ACO00852.1| threonyl-tRNA synthetase [Brucella melitensis ATCC 23457]
 gi|263094080|gb|EEZ18002.1| threonyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|23501949|ref|NP_698076.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161619021|ref|YP_001592908.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163843337|ref|YP_001627741.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|254704361|ref|ZP_05166189.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|254710151|ref|ZP_05171962.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|254714150|ref|ZP_05175961.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|254716792|ref|ZP_05178603.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|256031646|ref|ZP_05445260.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|256061156|ref|ZP_05451310.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|256369496|ref|YP_003107004.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260168776|ref|ZP_05755587.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|260566393|ref|ZP_05836863.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|261218590|ref|ZP_05932871.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261317705|ref|ZP_05956902.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261321913|ref|ZP_05961110.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261325162|ref|ZP_05964359.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261755033|ref|ZP_05998742.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|261758257|ref|ZP_06001966.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|265988738|ref|ZP_06101295.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
 gi|38258386|sp|Q8G0L8|SYT_BRUSU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083599|sp|A9M582|SYT_BRUC2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083600|sp|B0CGM0|SYT_BRUSI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23347895|gb|AAN29991.1| threonyl-tRNA synthetase [Brucella suis 1330]
 gi|161335832|gb|ABX62137.1| threonyl-tRNA synthetase [Brucella canis ATCC 23365]
 gi|163674060|gb|ABY38171.1| threonyl-tRNA synthetase [Brucella suis ATCC 23445]
 gi|255999656|gb|ACU48055.1| threonyl-tRNA synthetase [Brucella microti CCM 4915]
 gi|260155911|gb|EEW90991.1| threonyl-tRNA synthetase [Brucella suis bv. 4 str. 40]
 gi|260923679|gb|EEX90247.1| threonyl-tRNA synthetase [Brucella ceti M13/05/1]
 gi|261294603|gb|EEX98099.1| threonyl-tRNA synthetase [Brucella ceti M644/93/1]
 gi|261296928|gb|EEY00425.1| threonyl-tRNA synthetase [Brucella pinnipedialis B2/94]
 gi|261301142|gb|EEY04639.1| threonyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261738241|gb|EEY26237.1| threonyl-tRNA synthetase [Brucella sp. F5/99]
 gi|261744786|gb|EEY32712.1| threonyl-tRNA synthetase [Brucella suis bv. 3 str. 686]
 gi|264660935|gb|EEZ31196.1| threonyl-tRNA synthetase [Brucella pinnipedialis M292/94/1]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|332174239|gb|AEE23493.1| threonyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 638

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 69/171 (40%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +D+     I   +L  +E  + ++  
Sbjct: 71  IRHSCAHLIGHAIKQLWPDVKMAIGPTID-NGFYYDIDMEHSINDEDLVKLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSA----LCGGTHV 699
            N  VV ++++ ++A  +  A   G +Y  ++   ++  +   G++       +C G HV
Sbjct: 130 TNYNVVKKVVSWQEARDTFEAR--GEEYKLQILDENIPKDATPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            +        ++    +     R ++      R +     +K K L ++L 
Sbjct: 188 PNMRFCQHFKLMK---VAGAYWRGDSDNKMLQRIYGTAWADK-KQLKAYLN 234


>gi|288802262|ref|ZP_06407702.1| alpha-amylase family protein [Prevotella melaninogenica D18]
 gi|288335229|gb|EFC73664.1| alpha-amylase family protein [Prevotella melaninogenica D18]
          Length = 721

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++   ++  N+ +    H+A HLL+  +  + G+  S N + I     +         + 
Sbjct: 566 TVDYVLNAHNKEEFPPAHTAEHLLNQVMMRMFGAERSNN-AHIERKKSKMTFILDHKPSR 624

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E K+IED +N +IA++LPV   +++R +         L    ++ +R+V +     G  
Sbjct: 625 KEEKAIEDEMNRLIAEDLPVTFEMIDRNNIPEGVDVGKLPEDASEMLRLVRI-----GDF 679

Query: 690 SSALCGGTHVSSTGEIMLLYIVS 712
              LC G HV ST +I    ++ 
Sbjct: 680 DVCLCIGKHVRSTAQIGRFEMLG 702


>gi|327252835|gb|EGE64489.1| threonyl-tRNA synthetase [Escherichia coli STEC_7v]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|187931727|ref|YP_001891712.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|238691566|sp|B2SGS3|SYT_FRATM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187712636|gb|ACD30933.1| threonyl-tRNA synthetase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 634

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQMKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|134301672|ref|YP_001121640.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|166223343|sp|A4IX68|SYT_FRATW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|134049449|gb|ABO46520.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 634

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQMKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|313633179|gb|EFS00061.1| alanyl-tRNA synthetase [Listeria seeligeri FSL N1-067]
          Length = 57

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           + +   ++A  L +  A    GG GGGRP MAQ+GG N  +   A+  V++++K+
Sbjct: 1   DAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAELGSALDYVSTWVKE 54


>gi|288927618|ref|ZP_06421465.1| alpha-amylase family protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330452|gb|EFC69036.1| alpha-amylase family protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 681

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +  +     S N + +     +   T  +  +  + K IE  +N++I ++
Sbjct: 545 HTAEHLLNQVMIRMFDCGRSTN-AHVERKKSKISYTLDRKPSRQDEKEIERRMNELIEED 603

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +++R D       + +   Y+  VR+V +     G   +  C G HV STG+I 
Sbjct: 604 LPVTYELVDRYDLPEGIDLSRVPDDYSSMVRIVRI-----GDFDACPCIGKHVRSTGQIG 658

Query: 707 LLYIVS 712
              ++ 
Sbjct: 659 KFVLLG 664


>gi|138896280|ref|YP_001126733.1| threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
 gi|134267793|gb|ABO67988.1| Threonyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 649

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 104/263 (39%), Gaps = 31/263 (11%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-LVLTIDYQNRRQ 582
           +G    D   +I  G++      +K   G      +  R  L+ +   +++T D      
Sbjct: 19  SGTSTEDIAASISPGLK------KKAIAGKLNGRFVDLRTPLQEDGELVIITQDMPEALD 72

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  A+  +   +V      +  +G  +D+     +T  +L  IE  +  I
Sbjct: 73  ILR-HSTAHLMAQAIKRLY-DNVKLGVGPVIENGFYYDIDMEHKLTPDDLPKIEAEMRKI 130

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +NL VV + ++R++AI       +G      +     E E   ++       LC G H
Sbjct: 131 VKENLDVVRKEVSRDEAIRLYEK--IGDHLKLELINDIPEGETISIYEQGEFFDLCRGVH 188

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V STG+I    ++S   I     R     G R        ++ L+ +       + ++  
Sbjct: 189 VPSTGKIKEFKLLS---ISGAYWR-----GDR-------NNKMLQRIYGTAFFKKEDLDH 233

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL 781
            + ++ EE ++       ++L+L
Sbjct: 234 YL-QLLEEAKERDHRKLGKELEL 255


>gi|229543582|ref|ZP_04432642.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
 gi|229328002|gb|EEN93677.1| threonyl-tRNA synthetase [Bacillus coagulans 36D1]
          Length = 640

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 5/159 (3%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ +           + HS  HL+  A+  + G+     G  I  +G  +D+  
Sbjct: 53  PIEEDGAIEIVTPEHEDALGILRHSTAHLMAQAVRRLYGNVKFGVGPAI-ENGFYYDMDL 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +T  +L  IE  +  I+A+NL +V ++++R++A    A      +  D +   +V  
Sbjct: 112 EVSLTPEDLPKIEKEMKKIVAENLEIVRKVVSRDEARKMFAHDEYKLELIDAIPDETVTV 171

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            + G     LC G HV STG+I    ++   +I     R
Sbjct: 172 YEQGEF-VDLCRGVHVPSTGKIKEFKLL---NIAGAYWR 206


>gi|317153730|ref|YP_004121778.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943981|gb|ADU63032.1| threonyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 25/192 (13%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             I HS  HL+  A+  +  +     G  I  DG  +D    +  T  +L++IE  +   
Sbjct: 69  HIIRHSTAHLMAEAVKKLFPAAKVTIGPAI-KDGFYYDFDFERSFTPEDLEAIEKEMLSS 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-----VVSVEYEDGGVHSSALCGGT 697
           +  N       M+ ++A A   A  +G  Y   +       V   Y  GG     LC G 
Sbjct: 128 VGANKDFSCTAMSADEARAYFDA--MGETYKGELIDDLGADVYTVYTHGGFAD--LCRGP 183

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV  TG +    ++S   +     R               ++++L+ +          + 
Sbjct: 184 HVPRTGMLKAFKLLS---VAGAYWR------------GSEKNKQLQRIYGTAWSDPKALK 228

Query: 758 GRVEEIWEEYRK 769
             ++ + E  ++
Sbjct: 229 KHLDRLEEARKR 240


>gi|157145991|ref|YP_001453310.1| threonyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157083196|gb|ABV12874.1| hypothetical protein CKO_01745 [Citrobacter koseri ATCC BAA-895]
          Length = 622

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  +  +G  +D+   + +T  ++ ++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWPNTKMAIGPVVD-NGFYYDIDLDRTLTQEDVDALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFVKR--GETYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKSLNAYLQRLEEAAK 221


>gi|282878574|ref|ZP_06287355.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella buccalis ATCC 35310]
 gi|281299365|gb|EFA91753.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella buccalis ATCC 35310]
          Length = 152

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           +        H+A HLL+  +  + G   S N + I     +      +     + K IE 
Sbjct: 6   EREVSFPPAHTAEHLLNQLMHRMFGCERSHN-AHIERKKSKMTFVLDRKPDKRDEKEIET 64

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N++I Q++PV   +++R+      +   L    +D +R+  +     G +    C G 
Sbjct: 65  RMNELIQQDMPVTFEVVDRQHLPEGISLDRLPADASDAIRICRI-----GDYDVCPCIGK 119

Query: 698 HVSSTGEIMLLYIVS 712
           HV ST +I    ++ 
Sbjct: 120 HVRSTSQIGRFELLG 134


>gi|254719143|ref|ZP_05180954.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|265984137|ref|ZP_06096872.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306838428|ref|ZP_07471273.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
 gi|264662729|gb|EEZ32990.1| threonyl-tRNA synthetase [Brucella sp. 83/13]
 gi|306406568|gb|EFM62802.1| threonyl-tRNA synthetase [Brucella sp. NF 2653]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|254701818|ref|ZP_05163646.1| threonyl-tRNA synthetase [Brucella suis bv. 5 str. 513]
          Length = 658

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGKVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|329296183|ref|ZP_08253519.1| threonyl-tRNA synthetase [Plautia stali symbiont]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 23/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  +L+ +E  ++ +  
Sbjct: 71  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDLDHTLTQEDLELLEKRMHQLAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  VV + ++ ++A    AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TNYDVVKKKVSWQEARDVFAAR--GESYKTTILDENISHDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     I     R                ++ L+ +          +   
Sbjct: 188 PNMRFCHHFKL---QKISGAYWR------------GNSDNKMLQRIYGTAWADNKQLAAY 232

Query: 760 VEEIWEEYRKLQLIHAK 776
           ++ + E  ++      K
Sbjct: 233 LQRLEEAAKRDHRKIGK 249


>gi|296449369|ref|ZP_06891150.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296880697|ref|ZP_06904650.1| threonine--tRNA ligase [Clostridium difficile NAP07]
 gi|296261715|gb|EFH08529.1| threonine--tRNA ligase [Clostridium difficile NAP08]
 gi|296428315|gb|EFH14209.1| threonine--tRNA ligase [Clostridium difficile NAP07]
          Length = 670

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL---RTEMSLVLTIDYQNRRQL 583
            + D   +I +G+   +       E + + H I     L   + E      +        
Sbjct: 50  SVMDVAKSISEGLARNVVAASVNGEVVGLDHIIDTDCDLNLFKFEDKEGKEV-------- 101

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H++ H+L  A+  +        G  I  +G  +D+     +   +L+ IE  +  I 
Sbjct: 102 -FRHTSAHILAQAIKRLYPEAKLAIGPSI-ENGFYYDIDLDHRLVPEDLEKIEAEMKKIA 159

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++L +    + R +A+        G  Y   +     E E    +       LC G H+
Sbjct: 160 KEDLKIERFELPRNEALE--LMKEQGEDYKVELISDLPESEIISFYKQGDFTDLCRGPHL 217

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST ++  + +    S+     R
Sbjct: 218 PSTKKVKAVKL---QSVAGAYWR 237


>gi|163790751|ref|ZP_02185177.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
 gi|159873931|gb|EDP68009.1| threonyl-tRNA synthetase [Carnobacterium sp. AT7]
          Length = 645

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 10/162 (6%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
             + R +       ++T D+++  Q+   HS  HL+ +AL  +        G  I+  G 
Sbjct: 47  VDLIRPLESDGSIEIITPDHEDALQILR-HSTAHLMANALRRLYPDIKFGVGPAIST-GF 104

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +D     PIT  ++  IE  +  I+ +N P++ + + RE+A+           Y   + 
Sbjct: 105 YYDTDSEAPITDEDIPKIEAEMMAIVKENNPIIRKEVTREEALEIF----KDDPYKVELI 160

Query: 678 VVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
               E E   V+       LC G HV STG I +  ++S + 
Sbjct: 161 TNLPESEAITVYDQGDFVDLCRGVHVPSTGRIQVFKLLSLAG 202


>gi|22125796|ref|NP_669219.1| threonyl-tRNA synthetase [Yersinia pestis KIM 10]
 gi|45442011|ref|NP_993550.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596666|ref|YP_070857.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108807773|ref|YP_651689.1| threonyl-tRNA synthetase [Yersinia pestis Antiqua]
 gi|108812050|ref|YP_647817.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|145598020|ref|YP_001162096.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149365658|ref|ZP_01887693.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|153950233|ref|YP_001400689.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162420291|ref|YP_001607032.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165927513|ref|ZP_02223345.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939479|ref|ZP_02228025.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011794|ref|ZP_02232692.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210452|ref|ZP_02236487.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400748|ref|ZP_02306254.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424849|ref|ZP_02316602.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170024059|ref|YP_001720564.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186895722|ref|YP_001872834.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|218929522|ref|YP_002347397.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|229837960|ref|ZP_04458119.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895121|ref|ZP_04510297.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|229898521|ref|ZP_04513666.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902362|ref|ZP_04517482.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|270490458|ref|ZP_06207532.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294503566|ref|YP_003567628.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|22654122|sp|Q8ZDW5|SYT_YERPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919846|sp|Q669Z0|SYT_YERPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122979581|sp|Q1C728|SYT_YERPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122980145|sp|Q1CIG3|SYT_YERPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225518|sp|A4TIL1|SYT_YERPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166987327|sp|A7FHG1|SYT_YERP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687259|sp|A9R0A8|SYT_YERPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238688418|sp|B1JJ17|SYT_YERPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238691408|sp|B2K668|SYT_YERPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21958722|gb|AAM85470.1|AE013793_6 threonine tRNA synthetase [Yersinia pestis KIM 10]
 gi|45436874|gb|AAS62427.1| threonyl-tRNA synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51589948|emb|CAH21580.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953]
 gi|108775698|gb|ABG18217.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Yersinia pestis
           Nepal516]
 gi|108779686|gb|ABG13744.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Yersinia pestis
           Antiqua]
 gi|115348133|emb|CAL21061.1| threonyl-tRNA synthetase [Yersinia pestis CO92]
 gi|145209716|gb|ABP39123.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides F]
 gi|149292071|gb|EDM42145.1| threonyl-tRNA synthetase [Yersinia pestis CA88-4125]
 gi|152961728|gb|ABS49189.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758]
 gi|162353106|gb|ABX87054.1| threonyl-tRNA synthetase [Yersinia pestis Angola]
 gi|165912528|gb|EDR31159.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920568|gb|EDR37845.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989259|gb|EDR41560.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207632|gb|EDR52112.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167049601|gb|EDR61009.1| threonyl-tRNA synthetase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056036|gb|EDR65814.1| threonyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750593|gb|ACA68111.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII]
 gi|186698748|gb|ACC89377.1| threonyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|229680697|gb|EEO76793.1| threonyl-tRNA synthetase [Yersinia pestis Nepal516]
 gi|229688069|gb|EEO80140.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694326|gb|EEO84373.1| threonyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701883|gb|EEO89906.1| threonyl-tRNA synthetase [Yersinia pestis Pestoides A]
 gi|262361608|gb|ACY58329.1| threonyl-tRNA synthetase [Yersinia pestis D106004]
 gi|262365651|gb|ACY62208.1| threonyl-tRNA synthetase [Yersinia pestis D182038]
 gi|270338962|gb|EFA49739.1| threonine--tRNA ligase [Yersinia pestis KIM D27]
 gi|294354025|gb|ADE64366.1| threonyl-tRNA synthetase [Yersinia pestis Z176003]
 gi|320015090|gb|ADV98661.1| threonyl-tRNA synthetase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 642

 Score = 76.7 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV     +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIEHTLTQEDLALLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWGDKKQLNAYLQRLEEAAK 241


>gi|330433149|gb|AEC18208.1| threonyl-tRNA synthetase [Gallibacterium anatis UMN179]
          Length = 643

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 23/214 (10%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++  V+K A  +    A VE    + E  L +           I HS  HLL HAL  + 
Sbjct: 39  RVNGVRKDACDLINEDANVEIITAKDEDGLEI-----------IRHSCAHLLGHALKQLY 87

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +     G  I  +G  +D+     +T+ +L+ IE  + ++   N  V+   ++ + A  
Sbjct: 88  PNAKMAIGPTI-ENGFYYDIDLDHSLTAEDLEKIEKRMLELAKTNYDVIKEPVSWQKAHD 146

Query: 662 SGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
                  G  Y   +   ++E          +    +C G HV +        +     +
Sbjct: 147 VFEQR--GEPYKMAILEENIEKTATPALYHHLEYIDMCRGPHVPNMRFCHHFKL---QKV 201

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
                R ++      R +     +K K LA +LK
Sbjct: 202 AGAYWRGDSNNKMLQRIYGTAWADK-KQLAEYLK 234


>gi|255305562|ref|ZP_05349734.1| threonyl-tRNA synthetase [Clostridium difficile ATCC 43255]
          Length = 639

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL---RTEMSLVLTIDYQNRRQL 583
            + D   +I +G+   +       E + + H I     L   + E      +        
Sbjct: 19  SVMDVAKSISEGLARNVVAASVNGEVVGLDHIIDTDCDLNLFKFEDKEGKEV-------- 70

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H++ H+L  A+  +        G  I  +G  +D+     +   +L+ IE  +  I 
Sbjct: 71  -FRHTSAHILAQAIKRLYPEAKLAIGPSI-ENGFYYDIDLDHRLVPEDLEKIEAEMKKIA 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++L +    + R +A+        G  Y   +     E E    +       LC G H+
Sbjct: 129 KEDLKIERFELPRNEALE--LMREQGEDYKVELISDLPESEIISFYKQGDFTDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST ++  + +    S+     R
Sbjct: 187 PSTKKVKAVKL---QSVAGAYWR 206


>gi|209526622|ref|ZP_03275147.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209492990|gb|EDZ93320.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 604

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+
Sbjct: 29  RIRHTTSHVMAMAVHKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEQDLKAIKKEMVKIL 87

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDGGVHSSALCGGTHVS 700
            + LPV+   ++RE+A        LG  Y           +     G     LC G HV 
Sbjct: 88  KRKLPVIREEVSREEAQRR--IETLGEPYKLEILADLTEPITIYHLGDQWWDLCAGPHVE 145

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG+I     +   S+     R
Sbjct: 146 TTGDINP-KAIELESVAGAYWR 166


>gi|192360042|ref|YP_001982990.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
 gi|238692463|sp|B3PL16|SYT_CELJU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190686207|gb|ACE83885.1| threonyl-tRNA synthetase [Cellvibrio japonicus Ueda107]
          Length = 642

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 21/196 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV     +T  ++ ++E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLYPDVKMAIGPTID-NGFYYDVDLEHKLTDEDIAALEARMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSA----LCGGTHV 699
               VV + ++ ++A A  AA   G  Y   +    +   +  G++       +C G HV
Sbjct: 130 TEYDVVKKKVSWQEAHAVFAAR--GESYKLEILERDIPQSDQPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            +    +   ++  S       S    ++RI       A +        L  L    K  
Sbjct: 188 PNMRFCLNFKLMRVSGAYWRGDSNNKMLQRIYGT----AFADAKQLKAYLNLLEEAAKRD 243

Query: 753 QGNVVGRVE--EIWEE 766
              +  + +   + +E
Sbjct: 244 HRKLAKKFDLFHLQDE 259


>gi|254369559|ref|ZP_04985570.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122513|gb|EDO66648.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 634

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQMKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|238786985|ref|ZP_04630785.1| Alanyl-tRNA synthetase-related protein [Yersinia frederiksenii ATCC
           33641]
 gi|238724773|gb|EEQ16413.1| Alanyl-tRNA synthetase-related protein [Yersinia frederiksenii ATCC
           33641]
          Length = 208

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 37/215 (17%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
             G++  V+   T F+ + GGQ  DTG     G    +  VQ++ + I      +  G  
Sbjct: 23  PDGEQFAVILSATIFHPQGGGQPSDTGYI---GDNRVVRVVQQQQQLIHYLETPITLGCH 79

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                    +D + R   +  HSA H L   +  I G       +   P   R     ++
Sbjct: 80  ------DAHVDSERRLLNTRMHSAGH-LIGNIGEIYG--WLPVKAHHWPGEGRVSFKRAE 130

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                ++ +I+  +   I Q+ P    +                     +     V + +
Sbjct: 131 APQPIDIDAIQRVLEKFIRQDWPREISV---------------------QGDFREVGFGE 169

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
              +    CGGTHV S   +  + ++S S  + GI
Sbjct: 170 LPAY---ACGGTHVGSLQVLGKVTVLSISE-KKGI 200


>gi|251789558|ref|YP_003004279.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
 gi|247538179|gb|ACT06800.1| threonyl-tRNA synthetase [Dickeya zeae Ech1591]
          Length = 642

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 80/204 (39%), Gaps = 18/204 (8%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLS--INHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +   +   E    L+I      +    I HS  HLL HA+  +        G  I  +
Sbjct: 42  GELVDAVDVIESDAQLSIITAKDEEGMEIIRHSCAHLLGHAIKQLWPDTKMAIGPVID-N 100

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +DV   + +T  +L+ +E  ++++ +++  VV + ++ ++A  +  A   G  Y   
Sbjct: 101 GFYYDVDLDRTLTQEDLELLEKRMHELASKDYDVVKKKVSWQEARDTFTAR--GESYKVA 158

Query: 676 VRVVSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRI 723
           +   ++  +D  G++       +C G HV +        +   S       S    ++RI
Sbjct: 159 ILDENISRDDRPGLYHHEEYIDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRI 218

Query: 724 EAITGQRARSHLMGQDEKLKSLAS 747
              T    +  L    ++L+  A 
Sbjct: 219 YG-TAWADKKQLSAYLQRLEEAAK 241


>gi|149180875|ref|ZP_01859377.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
 gi|148851394|gb|EDL65542.1| threonyl-tRNA synthetase [Bacillus sp. SG-1]
          Length = 647

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HSA H+L  A+  + G+     G  I  +G  +D+   K ++ ++L  IE  + +II
Sbjct: 76  MMRHSAAHILAQAVQRLYGNVQLGVGPVID-NGFYYDLDLEKSLSQSDLVEIEKEMKNII 134

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           ++N P+    ++R++A +  ++  L       +     E E   V+       LC G H+
Sbjct: 135 SENHPISREELSRKEAESLFSSDPLKV----ELIEDIPEDETLSVYRQGEFVDLCRGPHL 190

Query: 700 SSTGEIMLLYIVSESS 715
            STG +    +   S 
Sbjct: 191 PSTGMVKAFKLTHVSG 206


>gi|89256700|ref|YP_514062.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|156502860|ref|YP_001428925.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010452|ref|ZP_02275383.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368007|ref|ZP_04984027.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|290954131|ref|ZP_06558752.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312449|ref|ZP_06803221.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122999730|sp|Q2A2J0|SYT_FRATH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166223341|sp|A7NDB6|SYT_FRATF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89144531|emb|CAJ79846.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253817|gb|EBA52911.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|156253463|gb|ABU61969.1| threonyl-tRNA synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 634

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQMKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|331007295|ref|ZP_08330496.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
 gi|330418902|gb|EGG93367.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC1989]
          Length = 640

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 11/169 (6%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           +     +  +  L +           + HS  HL+ HA+  +        G  I  +G  
Sbjct: 45  VDAHDPIENDAELTIFTSKDEDGLEILRHSCAHLIGHAVKQLWPEAKMAIGPTI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +D+     +T  ++  IE  + ++I     VV ++ + +DA  +  A   G +Y   +  
Sbjct: 104 YDIDLDHMLTDEDMDKIEKRMRELIKTQYDVVKKVGSWQDAYDAFKAR--GEEYKLEILE 161

Query: 679 VSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +  +             +C G HV +        ++    I     R
Sbjct: 162 RDIPKDATPALYHHEEYVDMCRGPHVPNMKFCEHFKLM---RISGAYWR 207


>gi|170077251|ref|YP_001733889.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
 gi|169884920|gb|ACA98633.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 604

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 15/190 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G   T +G  +D    +P T A+LK+I+  +  I+
Sbjct: 25  RIRHTTSHVMAMAVQKLFPDAQVTIGPW-TENGFYYDFDKPEPFTEADLKAIKKEMVKIV 83

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVS 700
            + LPVV   ++R +A        +   Y   +       +     G     LC G HV 
Sbjct: 84  KKKLPVVREEISRAEAEKR--IKEINEPYKLEILAGIHDPITLYYLGDQWWDLCAGPHVE 141

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG+I     ++  S+     R     G      L             LK  Q     + 
Sbjct: 142 NTGDINP-KAIALESVAGAYWR-----GDENNQQLQRIYGTAWETPEQLKEYQ---RRKE 192

Query: 761 EEIWEEYRKL 770
           E +  ++RKL
Sbjct: 193 EALKRDHRKL 202


>gi|94264275|ref|ZP_01288069.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|94270245|ref|ZP_01291687.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93450880|gb|EAT01895.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
 gi|93455320|gb|EAT05527.1| Threonyl-tRNA synthetase, class IIa [delta proteobacterium MLMS-1]
          Length = 641

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  + G  V       T DG  +D    +P T  +L+ IE  + +I+A
Sbjct: 73  LRHSAAHVMAEAVLDLFGPEVQVTIGPATADGFYYDFDRRQPFTPDDLEKIEARMAEIVA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            + P   R M+   AI    A   G +Y   + +  +E E   ++S      LC G H+ 
Sbjct: 133 ADQPFERREMSLAQAIDFFTAQ--GQEYKVEL-LRELEAEQVSLYSQGNFVDLCRGPHLP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    +     +     R
Sbjct: 190 STGWLKAFKLT---RLAGAYWR 208


>gi|322368472|ref|ZP_08043041.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320552488|gb|EFW94133.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 640

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 11/195 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D    IG G+       +    G+     + +   L  +  LV+  D  +   
Sbjct: 17  EEGATVEDVAYEIGPGL------GKDTVAGVVDGELVDKATPLSEDCRLVIVTDQSDEYL 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA H+   AL  +        G   T +G  +D+   + + S +L  IED  +DI
Sbjct: 71  SVLRHSAAHVFAQALKRLHPEAKLTIGPW-TDEGFYYDIAGIE-LDSDDLAEIEDEGHDI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR--VVSVEYEDGGVHSSALCGGTHVS 700
           I ++L +     +RE+A              D       S+ + + G  S  LC G HVS
Sbjct: 129 IEEDLDIERVEKSREEAFDMYEDNEYKQDILDTEAADEDSISFYEQGEFSD-LCKGPHVS 187

Query: 701 STGEIMLLYIVSESS 715
           STGEI    ++  S+
Sbjct: 188 STGEIGGFTLLETSA 202


>gi|223044090|ref|ZP_03614129.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
 gi|222442484|gb|EEE48590.1| threonyl-tRNA synthetase [Staphylococcus capitis SK14]
          Length = 645

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L  + S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQMVDLTRPLEEDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  +   G  +D    + ++S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVV-EGGFYYDFDMDEKVSSDDFDKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +  ++++R++A            Y   +     E E   ++S      LC G HV 
Sbjct: 132 ENYKIERKVVSRDEAKEFF----KDDPYKLELIDAIPEDESVTLYSQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|295115128|emb|CBL35975.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SM4/1]
          Length = 605

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ ++  IE  +  I+
Sbjct: 31  ALRHTASHVMAQAVKRLYPDTKLAIGPSI-ADGFYYDVDPASPMTAEDMGKIEAEMKKIV 89

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NLP+    + RE+AIA          Y   +     E  +   +       LC G H+
Sbjct: 90  KENLPIERFTLPREEAIAF--MKEKEEPYKVELIEDLPEGAEISFYRQGEFVDLCAGPHL 147

Query: 700 SSTGEIM-LLYIVSESS-------IRAGIRRIEAIT 727
            ST ++     +++ +            + RI A  
Sbjct: 148 MSTKDVGKAYKLLNLAGAYWRGSEKNKMLTRIYATA 183


>gi|291571004|dbj|BAI93276.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 604

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+
Sbjct: 29  RIRHTTSHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEQDLKAIKKEMVKIL 87

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDGGVHSSALCGGTHVS 700
            + LPV+   ++RE+A        LG  Y           +     G     LC G HV 
Sbjct: 88  KRKLPVIREEVSREEAQRR--IETLGEPYKLEILADLTEPITIYHLGDQWWDLCAGPHVE 145

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG+I     +   S+     R
Sbjct: 146 TTGDINP-KAIELESVAGAYWR 166


>gi|284052870|ref|ZP_06383080.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 508

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+
Sbjct: 29  RIRHTTSHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDSPEPFTEQDLKAIKKEMVKIL 87

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDGGVHSSALCGGTHVS 700
            + LPV+   ++RE+A        LG  Y           +     G     LC G HV 
Sbjct: 88  KRKLPVIREEVSREEAQRR--IETLGEPYKLEILADLTEPITIYHLGDQWWDLCAGPHVE 145

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG+I     +   S+     R
Sbjct: 146 TTGDINP-KAIELESVAGAYWR 166


>gi|260682273|ref|YP_003213558.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260685872|ref|YP_003217005.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
 gi|260208436|emb|CBA60998.1| threonyl-tRNA synthetase [Clostridium difficile CD196]
 gi|260211888|emb|CBE02332.1| threonyl-tRNA synthetase [Clostridium difficile R20291]
          Length = 670

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL---RTEMSLVLTIDYQNRRQL 583
            + D   +I +G+   +       E + + H I     L   + E      +        
Sbjct: 50  SVMDVAKSISEGLARNVVAASVNGEVVGLDHIIDTDCDLNLFKFEDKEGKEV-------- 101

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H++ H+L  A+  +        G  I  +G  +D+     +   +L+ IE  +  I 
Sbjct: 102 -FRHTSAHILAQAIKRLYPEAKLAIGPSI-ENGFYYDIDLDHRLVPEDLEKIEAEMKKIA 159

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++L +    + R +A+        G  Y   +     E E    +       LC G H+
Sbjct: 160 KEDLKIERFELPRNEALE--LMKEQGEDYKVELISDLPESEIISFYKQGDFTDLCRGPHL 217

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST ++  + +    S+     R
Sbjct: 218 PSTKKVKAVKL---QSVAGAYWR 237


>gi|255654593|ref|ZP_05400002.1| threonyl-tRNA synthetase [Clostridium difficile QCD-23m63]
          Length = 639

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL---RTEMSLVLTIDYQNRRQL 583
            + D   +I +G+   +       E + + H I     L   + E      +        
Sbjct: 19  SVMDVAKSISEGLARNVVAASVNGEVVGLDHIIDTDCDLNLFKFEDKEGKEV-------- 70

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H++ H+L  A+  +        G  I  +G  +D+     +   +L+ IE  +  I 
Sbjct: 71  -FRHTSAHILAQAIKRLYPEAKLAIGPSI-ENGFYYDIDLDHRLVPEDLEKIEAEMKKIA 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++L +    + R +A+        G  Y   +     E E    +       LC G H+
Sbjct: 129 KEDLKIERFELPRNEALE--LMKEQGEDYKVELISDLPESEIISFYKQGDFTDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST ++  + +    S+     R
Sbjct: 187 PSTKKVKAVKL---QSVAGAYWR 206


>gi|251795037|ref|YP_003009768.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
 gi|247542663|gb|ACS99681.1| threonyl-tRNA synthetase [Paenibacillus sp. JDR-2]
          Length = 637

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
            HS  H+L  A+  + GS   + G   +  DG  +DV     +++ +L++IE  +  I+ 
Sbjct: 73  RHSTAHVLAQAIKRLYGSEAVKLGIGPVIEDGFYYDVDLDHSLSTKDLEAIEQEMRSIVK 132

Query: 645 QNLPVVTRIMNREDAI----ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           +NLP+  RI++RE+A+      G    L    N     V   YE G      LC G H+ 
Sbjct: 133 ENLPIKRRIVSREEALVLFGERGEPLKLELILNLPDGEVIRIYEQGEFAD--LCRGPHLP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG I    ++    +     R
Sbjct: 191 STGRIKAFKLL---HVAGAYWR 209


>gi|319405749|emb|CBI79372.1| Threonyl-tRNA synthetase [Bartonella sp. AR 15-3]
          Length = 654

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +      R    I H   H+L  A+  +        G  I  +G  +D   
Sbjct: 53  PLEQSGQVEIITRDDPRALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFAR 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L +IE  +++II +N P    I++RE A      +     Y   +     + 
Sbjct: 112 KQPFTLDDLTTIEKKMHEIIQRNKPFRKEILSREKAKKIF--SEKNEFYKIELIDSIPDD 169

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           +D  ++       LC G H+ STG+I     ++    +     R
Sbjct: 170 QDLKIYYQGDWFDLCRGPHMQSTGQIGNAFKLMK---VAGAYWR 210


>gi|298252757|ref|ZP_06976551.1| threonyl-tRNA synthetase [Gardnerella vaginalis 5-1]
 gi|297533121|gb|EFH72005.1| threonyl-tRNA synthetase [Gardnerella vaginalis 5-1]
          Length = 660

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 565 LRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L    ++  + +D ++   +   HSATH++  A+  I        G  I  DG  +D   
Sbjct: 33  LHDGDTVESVALDSEDGIAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFDV 90

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN--DRV 676
             P T  +LK IE ++  II ++     R++  ++A            L+G K    D  
Sbjct: 91  DTPFTPDDLKQIEKHMQRIIKESQSFRRRVVTEDEAREEEANQPYKLELIGDKEAALDPA 150

Query: 677 RVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   +  ++           S LC G H+ +T  I    +     + A   R
Sbjct: 151 ASGEISKHELSMYDNVDREGNKVWSDLCRGPHLPNTRYIKAFKL---ERVAAAYWR 203


>gi|257875532|ref|ZP_05655185.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
 gi|257809698|gb|EEV38518.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC20]
          Length = 646

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 11/180 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      I     +  + ++ +           + HS  HL+  A+  +  S   
Sbjct: 34  KKALAGKVNGQLIDLSRPIEEDATIEIVTPDHEDALGLLRHSTAHLMAQAMRRLYPSIHF 93

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I             P+T+ +L +IE  +  II +NLP+  R++ +E+A+   A  
Sbjct: 94  GVGPAIDSGFYYDTDNGENPVTAEDLPAIEAEMMKIIKENLPIERRVLTKEEALTLFA-- 151

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                Y   +     + E    +       LC G HV STG I +  ++S   +     R
Sbjct: 152 --EDPYKVELITELPDDETITAYQQGEFVDLCRGPHVPSTGRIQVYKLLS---VAGAYWR 206


>gi|213650865|ref|ZP_03380918.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 622

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|172058202|ref|YP_001814662.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
 gi|171990723|gb|ACB61645.1| threonyl-tRNA synthetase [Exiguobacterium sibiricum 255-15]
          Length = 646

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 14/179 (7%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K  G  + +    R  +  + S+ L +         I HS+ HL+  A+  +        
Sbjct: 41  KLNGQVIDY----RRPIEEDGSIELVMPDSEEGLDLIRHSSAHLMAQAIKRLYPDETIHL 96

Query: 609 GSCIT-PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
           G   T  +G  +D+   + +T  +L  IE  +N I  +NLP+   +++R++A+A      
Sbjct: 97  GIGPTIENGFYYDIDMERRLTEEDLPEIEKMMNKIAGENLPIEREVVSRDEALAVY--QE 154

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           L       +       +D   +       LC G HV +T ++ +  ++S   I     R
Sbjct: 155 LNDPLKIELIESIPADQDLTFYRQGEFFDLCRGPHVPATAKLQVFKLMS---IAGAYWR 210


>gi|306843943|ref|ZP_07476538.1| threonyl-tRNA synthetase [Brucella sp. BO1]
 gi|306275698|gb|EFM57422.1| threonyl-tRNA synthetase [Brucella sp. BO1]
          Length = 658

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 11/184 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K                L     + +      R    I H   H+L  A+  +      
Sbjct: 36  KKAVAYAVDGTVRDLSDPLGASGRVEIITREDPRALELIRHDTAHVLAEAVQELFPGTQV 95

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  +G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +  
Sbjct: 96  TIGPVI-ENGFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK 154

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIR 721
             G  Y   +       +D  ++       LC G H++STG+I     ++    +     
Sbjct: 155 --GESYKVELVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYW 209

Query: 722 RIEA 725
           R +A
Sbjct: 210 RGDA 213


>gi|295092070|emb|CBK78177.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Clostridium cf.
           saccharolyticum K10]
          Length = 650

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 15/156 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ ++  IE  +  I+
Sbjct: 76  ALRHTASHVMAQAVKRLYPDTKLAIGPSI-ADGFYYDVDPASPMTAEDMGKIEAEMKKIV 134

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NLP+    + RE+AIA          Y   +     E  +   +       LC G H+
Sbjct: 135 KENLPIERFTLPREEAIAF--MKEKEEPYKVELIEDLPEGAEISFYRQGEFVDLCAGPHL 192

Query: 700 SSTGEIM-LLYIVSESS-------IRAGIRRIEAIT 727
            ST ++     +++ +            + RI A  
Sbjct: 193 MSTKDVGKAYKLLNLAGAYWRGSEKNKMLTRIYATA 228


>gi|225851210|ref|YP_002731444.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
 gi|225645886|gb|ACO04072.1| threonyl-tRNA synthetase [Persephonella marina EX-H1]
          Length = 646

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 15/201 (7%)

Query: 523 EAGGQLGDT-GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           E G  L D      G+G +++     K  + I   H       +RT   L          
Sbjct: 15  EDGVTLKDIISALEGEGKKIKNVVGGKLNDQIIDLHT-----PIRTGGDLTFLTKKDPES 69

Query: 582 QLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNV 639
              + HS  H++  AL  + G  +V       T +G  +DV    K +T  +L  IE+ +
Sbjct: 70  LEILRHSFAHIMAQALKELYGDKNVHLGIGPTTENGFYYDVEIEGKRLTEEDLPVIEEKM 129

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSA----LC 694
            +II +N  +  + + R++A+           Y  D ++    E E   V+       LC
Sbjct: 130 REIIERNCEIERKELPRDEALKLFEEKR--EIYKIDIIKHQIPEGEPISVYQQCDFIDLC 187

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G H+ STGE  +  +VS + 
Sbjct: 188 RGPHLLSTGEAGVFKLVSLAG 208


>gi|170287992|ref|YP_001738230.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
 gi|238688803|sp|B1L7W6|SYT_THESQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|170175495|gb|ACB08547.1| threonyl-tRNA synthetase [Thermotoga sp. RQ2]
          Length = 640

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 5/196 (2%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +   +  D G  I      +   V+K    +        +  +  +  L L        
Sbjct: 8   PDGKEKEYDRG--ITPAEIAKELGVKKAIGAVVNGELWDLKRPIENDCELRLVTLEDPEA 65

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVTH-SKPITSAELKSIEDNV 639
                H+  H+L  A+  I G    + G   T  +G  +D    +  +T  +L  IE  +
Sbjct: 66  PEFYRHTMAHILAQAVMRIYGKENVKLGIGPTIENGFYYDFDIKNGRLTEEDLPKIEQEM 125

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             II +NLP+  + +++E+A           +  + +    V     G     LC G H+
Sbjct: 126 KKIIKENLPIERKEISKEEARKLFNNQPYKLELIEEIEGDRVTIYRQGEFVD-LCRGPHL 184

Query: 700 SSTGEIMLLYIVSESS 715
            STG +    ++S S 
Sbjct: 185 PSTGIVKHFKLLSVSG 200


>gi|71275167|ref|ZP_00651454.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|170731158|ref|YP_001776591.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
 gi|238687955|sp|B0U5E3|SYT_XYLFM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71163976|gb|EAO13691.1| Threonyl-tRNA synthetase, class IIa [Xylella fastidiosa Dixon]
 gi|167965951|gb|ACA12961.1| threonyl-tRNA synthetase [Xylella fastidiosa M12]
          Length = 635

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVI-ADGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSA----LCGGTHV 699
           Q+  VV  I  R D +        G  Y  R+      E    G++       +C G HV
Sbjct: 131 QDYDVVKHITARHDVVRLFKER--GEDYKLRLIEDMGPEVTAMGIYHHQEYVDMCRGPHV 188

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +     I     R               ++E+L+ +       +  +   
Sbjct: 189 PNTRFLKAFRLT---RISGAYWR------------GDTKNEQLQRIYGTAWADKKQLEAY 233

Query: 760 VEEIWEEYRKLQLIHAKRK 778
           ++ + +  ++      K +
Sbjct: 234 MQRLQDAEKRDHRKIGKAQ 252


>gi|228993303|ref|ZP_04153219.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766371|gb|EEM15014.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 643

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 25/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G      I  R  +  + ++ ++T+D ++   +   HS  HLL  AL  +    V
Sbjct: 36  KKAVAGKLNDEMIDLRTPIEEDGAVSIITLDSEDGLYILR-HSTAHLLAQALKRLY-KDV 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG-- 663
                 +  +G  +D+   + IT  +   IE  +  I+ +NL +V   + R +A+     
Sbjct: 94  KLGIGPVIENGFYYDIDMEEAITVEDFPKIEKEMQKIVNENLEIVRHEVPRAEALRRYEE 153

Query: 664 -AAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
               L     ND      +  YE G  +   LC G H+ STG+I +  ++S   +     
Sbjct: 154 IGDELKLELINDLPEDAIISIYEQGEFYD--LCRGVHLPSTGKIKMFKLLS---VAGAYW 208

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R                ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 209 R------------GDSNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 255


>gi|192292254|ref|YP_001992859.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192286003|gb|ACF02384.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 15/159 (9%)

Query: 573 LTID----YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             ID       R    I H   H+L  A+ ++        G  I  +G  +D   ++P T
Sbjct: 86  AQIDFVARDDARALELIRHDCAHVLAEAVQSLWPGTQVTIGPTI-ENGFYYDFFRNEPFT 144

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +  +IE  + +IIA++ P    +  R++A    A    G  +   +     E +   +
Sbjct: 145 PEDFAAIEKKMREIIARDKPFTKEVWTRDEAKKVFADN--GEAFKVELVDAIPEDQTIKI 202

Query: 689 HSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           +       LC G H++STG+I     ++    +     R
Sbjct: 203 YKQGEWFDLCRGPHMTSTGKIGTAFKLMK---VAGAYWR 238


>gi|1565235|emb|CAB02510.1| Threonyl tRNA Synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 601

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+  H+L  A+  + G  VS     +  DG  +D+   K + S +L++IE  + +II 
Sbjct: 37  LRHTTAHVLAQAVKRLYGE-VSLGVGPVILDGFYYDMKLGKSLASGDLEAIEKEMKNIIN 95

Query: 645 QNLPVVTRIMNREDAIASGA---AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           +NL +    ++ E+A    A     L      D  R   +     G     LC G H+ S
Sbjct: 96  ENLEIKRIEVSYEEAEELFAQKDERLKLEILKDIPRGEDITLYQQGEFVD-LCRGPHLPS 154

Query: 702 TGEIMLLYIVSESS 715
           TG I    +   S 
Sbjct: 155 TGMIKAFKLTRVSG 168


>gi|224584156|ref|YP_002637954.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254783535|sp|C0Q647|SYT_SALPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|224468683|gb|ACN46513.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 642

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L    + +  I  ++   L I  HS  HLL HA+  +   H       +  +G  
Sbjct: 45  VDACDLIENDATLAIITAKDEEGLEIIRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +DV   + +T  +++++E  ++++  +N  V+ + ++  DA  +      G  Y   +  
Sbjct: 104 YDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHDARETFVKR--GETYKVAILD 161

Query: 679 VSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAI 726
            ++ ++D  G++       +C G HV +        ++  +       S    ++RI   
Sbjct: 162 ENIAHDDKPGLYHHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG- 220

Query: 727 TGQRARSHLMGQDEKLKSLAS 747
           T    +  L    ++L+  A 
Sbjct: 221 TAWADKKALNAYLQRLEEAAK 241


>gi|115315107|ref|YP_763830.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|122324891|sp|Q0BL41|SYT_FRATO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115130006|gb|ABI83193.1| threonine--tRNA ligase [Francisella tularensis subsp. holarctica
           OSU18]
          Length = 634

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ PV  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPVSYRVVPKTEAIEFFKAQ--GENYKVE-IIDSIADEQMKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|126698152|ref|YP_001087049.1| threonyl-tRNA synthetase [Clostridium difficile 630]
 gi|254974173|ref|ZP_05270645.1| threonyl-tRNA synthetase [Clostridium difficile QCD-66c26]
 gi|255091574|ref|ZP_05321052.1| threonyl-tRNA synthetase [Clostridium difficile CIP 107932]
 gi|255099679|ref|ZP_05328656.1| threonyl-tRNA synthetase [Clostridium difficile QCD-63q42]
 gi|255313300|ref|ZP_05354883.1| threonyl-tRNA synthetase [Clostridium difficile QCD-76w55]
 gi|255515991|ref|ZP_05383667.1| threonyl-tRNA synthetase [Clostridium difficile QCD-97b34]
 gi|255649082|ref|ZP_05395984.1| threonyl-tRNA synthetase [Clostridium difficile QCD-37x79]
 gi|306519197|ref|ZP_07405544.1| threonyl-tRNA synthetase [Clostridium difficile QCD-32g58]
 gi|123066930|sp|Q189B8|SYT_CLOD6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|115249589|emb|CAJ67406.1| Threonyl-tRNA synthetase [Clostridium difficile]
          Length = 639

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 22/203 (10%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL---RTEMSLVLTIDYQNRRQL 583
            + D   +I +G+   +       E + + H I     L   + E      +        
Sbjct: 19  SVMDVAKSISEGLARNVVAASVNGEVVGLDHIIDTDCDLNLFKFEDKEGKEV-------- 70

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H++ H+L  A+  +        G  I  +G  +D+     +   +L+ IE  +  I 
Sbjct: 71  -FRHTSAHILAQAIKRLYPEAKLAIGPSI-ENGFYYDIDLDHRLVPEDLEKIEAEMKKIA 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++L +    + R +A+        G  Y   +     E E    +       LC G H+
Sbjct: 129 KEDLKIERFELPRNEALE--LMKEQGEDYKVELISDLPESEIISFYKQGDFTDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST ++  + +    S+     R
Sbjct: 187 PSTKKVKAVKL---QSVAGAYWR 206


>gi|284048337|ref|YP_003398676.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
 gi|283952558|gb|ADB47361.1| threonyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731]
          Length = 636

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +I H+A+H++  A+  +        G  I   G  +D+      T  +L++IE  ++ I
Sbjct: 71  HAIRHTASHVMAQAIQHLFPGTKFAIGPAI-EKGFYYDLDSDHVFTPDDLRAIEKEMSKI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I  N P+V   + R +A+A   A      Y   +     E      ++      LC G H
Sbjct: 130 IKANYPLVRNEIPRAEALAKFKA--EDEPYKVELIEDLPEDAVISTYTQGDFTDLCAGPH 187

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
             STG +    ++S   I     R
Sbjct: 188 CPSTGRVKAFKLMS---IAGAYWR 208


>gi|168233251|ref|ZP_02658309.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472380|ref|ZP_03078364.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458744|gb|EDX47583.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332671|gb|EDZ19435.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 642

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GESYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|148269334|ref|YP_001243794.1| threonyl-tRNA synthetase [Thermotoga petrophila RKU-1]
 gi|166225512|sp|A5IJ45|SYT_THEP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147734878|gb|ABQ46218.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermotoga
           petrophila RKU-1]
          Length = 640

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 5/196 (2%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +   +  D G  I      +   V+K    +        +  +  +  L L        
Sbjct: 8   PDGKEKEYDRG--ITPAEIAKELGVKKAIGAVVNGELWDLKRPIENDCELRLVTLEDPEA 65

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVTH-SKPITSAELKSIEDNV 639
                H+  H+L  A+  I G    + G   T  +G  +D    +  +T  +L  IE  +
Sbjct: 66  PEFYRHTMAHILAQAVMRIYGKENVKLGIGPTIENGFYYDFDIKNGKLTEEDLPKIEQEM 125

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             II +NLP+  + +++E+A           +  + +    V     G     LC G H+
Sbjct: 126 KKIIKENLPIERKEISKEEARKLFNNQPYKLELIEEIEGDRVTIYRQGEFVD-LCRGPHL 184

Query: 700 SSTGEIMLLYIVSESS 715
            STG +    ++S S 
Sbjct: 185 PSTGVVKHFKLLSVSG 200


>gi|330861018|emb|CBX71290.1| threonyl-tRNA synthetase [Yersinia enterocolitica W22703]
          Length = 457

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDHPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWSDKKQLNAYLQRLEEAAK 241


>gi|283785057|ref|YP_003364922.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
 gi|282948511|emb|CBG88100.1| threonyl-tRNA synthetase [Citrobacter rodentium ICC168]
          Length = 642

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  ++ ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GEPYKVSILDENIAHDDQPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +            ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSDNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|271500480|ref|YP_003333505.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
 gi|270344035|gb|ACZ76800.1| threonyl-tRNA synthetase [Dickeya dadantii Ech586]
          Length = 642

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV     +T  +L+ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDLEHTLTQEDLELLEKRMHELAG 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GESYKVAILDENISHDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLSAYLQRLEEAAK 241


>gi|217979642|ref|YP_002363789.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
 gi|217505018|gb|ACK52427.1| threonyl-tRNA synthetase [Methylocella silvestris BL2]
          Length = 648

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 18/196 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +R    +        R    I H A H+L  A+ T+        G  I  +G  +D   
Sbjct: 50  PVRHGARVEFIGREDKRALELIRHDAAHVLAEAVQTLYPGTQVTIGPVI-ENGFYYDFFR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           ++P T  +  ++E  + +IIA++ P    + +R+ A +       G  +   +       
Sbjct: 109 NEPFTPDDFAAVEKKMAEIIARDRPFTKEVWSRDQARSFFETR--GEAFKVELVDSIPGD 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESS---IRAGIR----RIEAI---TG 728
           ED  ++       LC G H++STG+I     ++  +         R    RI A    T 
Sbjct: 167 EDLKIYRQGDWLDLCRGPHMTSTGKIGDAFKLMKVAGAYWRGDSNRPMLQRIYATAFATR 226

Query: 729 QRARSHLMGQDEKLKS 744
           +   ++L   +E  K 
Sbjct: 227 EELAAYLRQIEEAEKR 242


>gi|281411969|ref|YP_003346048.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
 gi|281373072|gb|ADA66634.1| threonyl-tRNA synthetase [Thermotoga naphthophila RKU-10]
          Length = 640

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 5/196 (2%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +   +  D G  I      +   V+K    +        +  +  +  L L        
Sbjct: 8   PDGKEKEYDRG--ITPAEIAKELGVKKAIGAVVNGELWDLKRPIENDCELRLVTLEDPEA 65

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVTH-SKPITSAELKSIEDNV 639
                H+  H+L  A+  I G    + G   T  +G  +D    +  +T  +L  IE  +
Sbjct: 66  PEFYRHTMAHILAQAVMRIYGKENVKLGIGPTIENGFYYDFDIKNGKLTEEDLPKIEQEM 125

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             II +NLP+  + +++E+A           +  + +    V     G     LC G H+
Sbjct: 126 KKIIKENLPIERKEISKEEARKLFNNQPYKLELIEEIEGDRVTIYRQGEFVD-LCRGPHL 184

Query: 700 SSTGEIMLLYIVSESS 715
            STG +    ++S S 
Sbjct: 185 PSTGVVKHFKLLSVSG 200


>gi|262197934|ref|YP_003269143.1| threonyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
 gi|262081281|gb|ACY17250.1| threonyl-tRNA synthetase [Haliangium ochraceum DSM 14365]
          Length = 628

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +   I HS  HL+  A+ T+        G   T DG  +D       +  + K+I   + 
Sbjct: 16  QLHRIRHSTAHLMAAAVCTLWPDTKLAFGPP-TGDGFYYDFLTEHRFSEQDFKAITKKMR 74

Query: 641 DIIAQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           ++I ++     R +++ DA+    G   +L  ++  ++    +   + G     LC G H
Sbjct: 75  ELIKRDERFERREISKADALKLFEGQGEMLKAEHVGKLTDGEISLYETGEFVD-LCSGPH 133

Query: 699 VSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           V ST ++    + + SS        R G++RI   T  R +  L     +L+    
Sbjct: 134 VDSTRDLGHFKLTAVSSSYWLGDETREGLQRIYG-TAWRTKEELKEHLRRLEEAKR 188


>gi|170754255|ref|YP_001782772.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|229557978|sp|B1IMV3|SYT_CLOBK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169119467|gb|ACA43303.1| threonyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 635

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+  H+L  A+  +        G  I   G  +D       T   L+ IE  +  II
Sbjct: 70  ALRHTGAHILAQAVKRLYPEVKLAIGPAIDT-GFYYDFEADFTFTPEILEKIEAEIKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +N  +    + RE+AI           Y   +     E E    +       LC G HV
Sbjct: 129 KENHKLERFELPREEAI--NLMKENNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG++  + ++S             + G  A       ++ L+ +       +  +   
Sbjct: 187 PSTGKVKSVKLLS-------------LAG--AYWRGNENNKMLQRIYGTAFTKKSELDEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L L
Sbjct: 232 L-NMLEEAKKRDHRKLGKELDL 252


>gi|326789266|ref|YP_004307087.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
 gi|326540030|gb|ADZ81889.1| threonyl-tRNA synthetase [Clostridium lentocellum DSM 5427]
          Length = 586

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 22/205 (10%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
            +   + +  H+A+H+L  A+  +  +     G  I  DG  +D       T+A L  IE
Sbjct: 16  EEKEGKNAFRHTASHVLAQAVKRLYPTTKCAIGPVI-EDGFYYDFEFDFEFTAANLVEIE 74

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             +  I+ ++L +    +NRE+A+A          Y   +     E      +       
Sbjct: 75  QEMRKIVKESLSLQRYTLNREEALA--LMKEKNEPYKIELINDLPEDAQLSFYQQGDYLE 132

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LC G HV++T  I                 + A  G  A      +++ L  +       
Sbjct: 133 LCAGPHVTNTSLIKAFK-------------LTATAG--AYWRGNEKNKMLTRIYGTAFPK 177

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKR 777
             ++   ++ I E  ++      K 
Sbjct: 178 SSDLEAYLQSIEEAKKRDHRKLGKE 202


>gi|228999356|ref|ZP_04158935.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229006911|ref|ZP_04164541.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228754311|gb|EEM03726.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228760301|gb|EEM09268.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 643

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 37/246 (15%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G      I  R  +  + ++ ++T+D ++   +   HS  HLL  AL  +    V
Sbjct: 36  KKAVAGKLNDEMIDLRTPIEEDGAVSIITLDSEDGLYILR-HSTAHLLAQALKRLY-KDV 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                 +  +G  +D+   + IT  +   IE  +  I+ +NL +V   + R +A+     
Sbjct: 94  KLGIGPVIENGFYYDIDMEEAITVEDFPKIEKEMQKIVNENLEIVRHEVPRAEALRRY-- 151

Query: 666 ALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                +  D +++  +           YE G  +   LC G H+ STG+I +  ++S   
Sbjct: 152 ----EEIGDELKLELINDLPEDAVISIYEQGEFYD--LCRGVHLPSTGKIKMFKLLS--- 202

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           +     R                ++ L+ +     V +  +   +  + EE ++      
Sbjct: 203 VAGAYWR------------GDSNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKL 249

Query: 776 KRKLQL 781
            ++L+L
Sbjct: 250 GKELKL 255


>gi|118444060|ref|YP_877833.1| threonyl-tRNA synthetase [Clostridium novyi NT]
 gi|166223336|sp|A0PZN1|SYT_CLONN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118134516|gb|ABK61560.1| threonyl-tRNA synthetase [Clostridium novyi NT]
          Length = 637

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 24/199 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I  +G  +D       T   L+ IE  +N I+
Sbjct: 70  TLRHTASHILAQAVKRLYPEVKLAIGPSI-ENGFYYDFDAEFSFTPEILEKIEKEMNKIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTH 698
            +NL +     +REDAI           Y      D      + + + G     LC G H
Sbjct: 129 KENLQLKKFTKSREDAI--NFMKERNEDYKVELIEDLPEESIISFYEQGDF-VDLCAGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V ST E+  + ++S   +     R                ++ L+ +       +  +  
Sbjct: 186 VPSTKEVKAIKLLS---VAGAYWR------------GNENNKMLQRIYGTAFTKKAELEE 230

Query: 759 RVEEIWEEYRKLQLIHAKR 777
            +  + E  ++      K 
Sbjct: 231 YLHMLEEAKKRDHRKLGKE 249


>gi|157825427|ref|YP_001493147.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
 gi|166225491|sp|A8GML4|SYT_RICAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157799385|gb|ABV74639.1| threonyl-tRNA synthetase [Rickettsia akari str. Hartford]
          Length = 635

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A   +        G  I  +G  +D    KP T  ++  IE  +++I+ 
Sbjct: 71  IRHDAAHIIAEAAKELFPDIQVTIGPAI-ENGFFYDFAKDKPFTPDDVAMIEARMHEIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +   + NR+ AI    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 RNEQITRELWNRDKAIEFFKS--IGEHYKAEIIASIPAGEQITLYRQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGFVKHFKLMK---VAGAYWR 206


>gi|156935447|ref|YP_001439363.1| hypothetical protein ESA_03306 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533701|gb|ABU78527.1| hypothetical protein ESA_03306 [Cronobacter sakazakii ATCC BAA-894]
          Length = 210

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 37/210 (17%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
           + EV  D T F+ + GGQ  D+G   G    + +  V+ + + +    A      + T  
Sbjct: 28  EYEVELDTTLFHPQGGGQPSDSGTING----VPVLRVENRGDLVIHLLA----QPVATG- 78

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + L +D   R + +  HSA HL+ +A   +    V    +   P   +     ++    
Sbjct: 79  PVTLVVDDTLRHRHTRWHSAGHLIGYAGEQLGWQPV---KAHHWPGEGKITFAPAQASDV 135

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +  ++ + +   +A +LP     ++    +  G   + G                    
Sbjct: 136 PDANALSEKIAAWVAADLPRYVDFVDGRRQVRFGELPVYG-------------------- 175

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
               CGGTHV+S  ++  + +     ++ G
Sbjct: 176 ----CGGTHVASLSQVGEVTLTG-IKVKKG 200


>gi|319407312|emb|CBI80953.1| Threonyl-tRNA synthetase [Bartonella sp. 1-1C]
          Length = 654

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 11/167 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +      R    I H   H+L  A+  +        G  I  +G  +D   
Sbjct: 53  PLEQSGQVEIITRDDPRALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFAR 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L +IE  + +II +N P    I +RE A      +     Y   +     + 
Sbjct: 112 KQPFTLDDLTTIEKKMREIIQRNQPFRKEIWSREKAKKIF--SEKNELYKVELIDSIPDD 169

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +D  V+       LC G H+ STG+I     ++    +     R +A
Sbjct: 170 QDLKVYYQGDWFDLCRGPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|303237246|ref|ZP_07323816.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella disiens FB035-09AN]
 gi|302482633|gb|EFL45658.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella disiens FB035-09AN]
          Length = 156

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  N+ +    H+A HLL+  +  I G+  S N + I     +            E K+I
Sbjct: 8   NEHNKEEFPPAHTAEHLLNQLMGRIFGAERSNN-AHIERKKSKMTFLLDHKPLRKEEKAI 66

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           ED +N +I  ++P+   + +R +     +   L    ++++R+V +     G +    C 
Sbjct: 67  EDEMNRLIELDMPITYELADRNELPEGVSLDRLPEDASEKIRLVRI-----GDYDVCPCI 121

Query: 696 GTHVSSTGEIMLLYIVS 712
           G HV ST +I    ++ 
Sbjct: 122 GKHVRSTAQIGRFEMLG 138


>gi|62179922|ref|YP_216339.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168263848|ref|ZP_02685821.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463268|ref|ZP_02697199.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|73919823|sp|Q57PV3|SYT_SALCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62127555|gb|AAX65258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|195634423|gb|EDX52775.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205347615|gb|EDZ34246.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|322714388|gb|EFZ05959.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 17/201 (8%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L    + +  I  ++   L I  HS  HLL HA+  +   H       +  +G  
Sbjct: 45  VDACDLIENDATLAIITAKDEEGLEIIRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +DV   + +T  +++++E  ++++  +N  V+ + ++  DA  +      G  Y   +  
Sbjct: 104 YDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHDARETFVKR--GETYKVAILD 161

Query: 679 VSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAI 726
            ++ ++D  G++       +C G HV +        ++  +       S    ++RI   
Sbjct: 162 ENIAHDDKPGLYHHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG- 220

Query: 727 TGQRARSHLMGQDEKLKSLAS 747
           T    +  L    ++L+  A 
Sbjct: 221 TAWADKKALNAYLQRLEEAAK 241


>gi|319408458|emb|CBI82113.1| Threonyl-tRNA synthetase [Bartonella schoenbuchensis R1]
          Length = 659

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 11/167 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +      R    I H   H+L  A+  +        G  I  +G  +D   
Sbjct: 53  PLEQSGQVEIITRDDPRALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFAR 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L  IE  + +II +N P    I +RE A      +     Y   +     E 
Sbjct: 112 KQPFTLDDLTIIEKKMREIIQRNKPFRKEIWSREKAKKIF--SEKNELYKVEIIDAIPED 169

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +D  V+       LC G H+ STG+I     ++    +     R +A
Sbjct: 170 QDVKVYYQGDWFDLCRGPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|260597637|ref|YP_003210208.1| threonyl-tRNA synthetase [Cronobacter turicensis z3032]
 gi|260216814|emb|CBA30296.1| Threonyl-tRNA synthetase [Cronobacter turicensis z3032]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDHTLTQEDIDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++ ++A  +      G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 TNYDVIKKKVSWQEARETFVNR--GESYKVAILDENIARDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSSNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|227111545|ref|ZP_03825201.1| threonyl-tRNA synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAVKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDIELLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 TDYDVIKKKVSWQEARDAFAAR--GETYKMAILDENISRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  + 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLASYLQRLEEASK 241


>gi|58584729|ref|YP_198302.1| threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|73919844|sp|Q5GSG4|SYT_WOLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58419045|gb|AAW71060.1| Threonyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 632

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +  +     G  I  DG  +D       T+ +L +IE  + +II 
Sbjct: 69  IRHDAAHIMAQAVKELFPNAQVTIGPTIQ-DGFYYDFAIDHTFTTDDLAAIEKKMKEIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N   +  +  R+ AI   ++  +G KY   +     E ED  V+       LC G H  
Sbjct: 128 SNHRFIREVWARKQAINFFSS--IGEKYKVDIISSIPESEDLTVYRQGDFVDLCRGPHSP 185

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  +    ++    +     R
Sbjct: 186 STSRVKAFKLMK---VAGAYWR 204


>gi|15602458|ref|NP_245530.1| threonyl-tRNA synthetase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431883|sp|P57857|SYT_PASMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12720863|gb|AAK02677.1| ThrS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 24/223 (10%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++   +K A  +    + +E    + E  L +           I HS  HLL HA+  + 
Sbjct: 39  RVNGERKDACDLITEDSKLEIITAKEEDGLEI-----------IRHSCAHLLGHAIKQLF 87

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +     G  I   G  +DV   + +T  +L ++E  + ++   N  VV ++++ ++A  
Sbjct: 88  PNVKMAIGPTID-KGFYYDVDLDRSLTQEDLDALEKRMLELAKTNYDVVKKVVSWQEARD 146

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSESSI 716
           +  A   G  Y   +   +++  D            +C G HV +        ++    +
Sbjct: 147 TFEAR--GEPYKMAILDENIDRCDTPALYHHEEYVDMCRGPHVPNMRFCHHFKLMK---V 201

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                R ++      R +     +K K L+ +L         R
Sbjct: 202 AGAYWRGDSKNKMLQRIYGTAWADK-KQLSEYL-TRLEEAAKR 242


>gi|16764684|ref|NP_460299.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991842|ref|ZP_02572941.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168244449|ref|ZP_02669381.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448321|ref|YP_002045340.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197262906|ref|ZP_03162980.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22654123|sp|Q8ZPS9|SYT_SALTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690646|sp|B4TGH1|SYT_SALHS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|16419852|gb|AAL20258.1| threonine tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194406625|gb|ACF66844.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197241161|gb|EDY23781.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205329759|gb|EDZ16523.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336802|gb|EDZ23566.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261246542|emb|CBG24352.1| ThrRS [Salmonella enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993213|gb|ACY88098.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157870|emb|CBW17364.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912318|dbj|BAJ36292.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223961|gb|EFX49024.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129604|gb|ADX17034.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|205352944|ref|YP_002226745.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690498|sp|B5RAX3|SYT_SALG2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|205272725|emb|CAR37641.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628018|gb|EGE34361.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|307150016|ref|YP_003885400.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
 gi|306980244|gb|ADN12125.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7822]
          Length = 608

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+A+H++  A+  +        G   T +G  +D    +P +  +LK+I+  +  II
Sbjct: 29  RIRHTASHIMAMAVQQLFPKAQVTIGPW-TENGFYYDFDTPQPFSEEDLKAIKKEMVKII 87

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVS 700
            + LPV+   ++R++A        +   Y   +       +     G     LC G HV 
Sbjct: 88  KRKLPVIREEVSRQEAERR--IKAINEPYKLEILEGIQEPITLYHLGDQWWDLCAGPHVE 145

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           ST +I     +   ++     R     G   ++ L                +   +    
Sbjct: 146 STADIDP-KAIELETVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLAEYK 192

Query: 759 --RVEEIWEEYRKL 770
             + E +  ++RKL
Sbjct: 193 RRKEEALKRDHRKL 206


>gi|54309341|ref|YP_130361.1| putative threonyl-tRNA synthetase [Photobacterium profundum SS9]
 gi|46913777|emb|CAG20559.1| putative threonyl-tRNA synthetase [Photobacterium profundum SS9]
          Length = 325

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+   + +T  ++ +IE  + +++ 
Sbjct: 71  IRHSCAHLLGHAIKQLYPEAKMAIGPTID-NGFYYDIDLEQSLTQDDVDAIEKRMKELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
               VV + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV
Sbjct: 130 TKYAVVKKKVSWQEARDAFEAR--GETYKIEILDENVSRDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            + G      ++S   +     R
Sbjct: 188 PNMGFCQHFKLLS---VAGAYWR 207


>gi|238797380|ref|ZP_04640880.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
 gi|238718811|gb|EEQ10627.1| Threonyl-tRNA synthetase [Yersinia mollaretii ATCC 43969]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D            +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDRPSLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWGDKKQLNAYLQRLEEAAK 241


>gi|53728893|ref|ZP_00134603.2| COG0441: Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126207707|ref|YP_001052932.1| threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20]
 gi|166223315|sp|A3MYU1|SYT_ACTP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126096499|gb|ABN73327.1| threonyl-tRNA synthetase ThrS [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 15/181 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV + ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVVKKRVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +        +     +     R ++      R +     +K K LA +L         
Sbjct: 187 VPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAK 241

Query: 759 R 759
           R
Sbjct: 242 R 242


>gi|319651798|ref|ZP_08005923.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317396450|gb|EFV77163.1| threonyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 10/163 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ +     N     + HS  HL+  A+  +   +V      +   G  +D+  
Sbjct: 53  PIEKDGAIEIVTPDSNDALEVLRHSTAHLMAQAIKRLY-KNVKLGVGPVIEGGFYYDIDL 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            + ++  +L  IE  +  II +NL VV + ++R +A+       +G +Y   +     E 
Sbjct: 112 EESLSPEDLPVIEKEMKKIINENLDVVRKEVSRNEAVQMY--KEIGDEYKLELIEAIPED 169

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E   ++       LC G HV STG++    ++S   I     R
Sbjct: 170 ETVTIYEQGEFFDLCRGVHVPSTGKLKEFKLLS---IAGAYWR 209


>gi|43066|emb|CAA23560.1| unnamed protein product [Escherichia coli]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHRFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|161614260|ref|YP_001588225.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|194446059|ref|YP_002040590.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|198243456|ref|YP_002215793.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207857160|ref|YP_002243811.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|189083620|sp|A9N243|SYT_SALPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690315|sp|B5FJA8|SYT_SALDC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238690400|sp|B5QVW8|SYT_SALEP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238693615|sp|B4T4M8|SYT_SALNS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161363624|gb|ABX67392.1| hypothetical protein SPAB_02005 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404722|gb|ACF64944.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|197937972|gb|ACH75305.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|206708963|emb|CAR33293.1| Threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|319404307|emb|CBI77900.1| Threonyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498]
          Length = 654

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 11/167 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     + +      R    I H   H+L  A+  +        G  I  +G  +D   
Sbjct: 53  PLEQSGQVEIITRDDPRALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFAR 111

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L +IE  + +II +N P    I +RE A      +     Y   +     + 
Sbjct: 112 KQPFTLDDLTTIEKKMREIIQRNKPFRKEIWSREKAKKIF--SEKNELYKVELIDAIPDD 169

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +D  V+       LC G H+ STG+I     ++    +     R +A
Sbjct: 170 QDLKVYYQGDWFDLCRGPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|148909063|gb|ABR17634.1| unknown [Picea sitchensis]
          Length = 682

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 22/203 (10%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  ++  L I H++ H+L  A+  +        G  I   G  +D    +P+T  
Sbjct: 100 IVLPTNETSKTLLCIRHTSAHVLAMAVQKVFPDAKVTIGPWIER-GFYYDFDI-QPLTDK 157

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDG 686
           +LK I+  ++ II +NLP++   ++RE+A        +   Y     D ++   +     
Sbjct: 158 DLKKIKKEMDRIIRRNLPLIREEVSREEAERR--IRAINEPYKLEILDSIKSEPITIYHI 215

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G     LC G HV STG +     +   S+     R     G   R  L           
Sbjct: 216 GDEWWDLCAGPHVESTGLLNK-KAIELESVAGAYWR-----GDEKRQMLQRIYGTAWENE 269

Query: 747 SFLKVSQGNVVGRVEEIWEEYRK 769
             LK  Q         + EE ++
Sbjct: 270 EQLKTYQF--------LKEEAKR 284


>gi|228475159|ref|ZP_04059885.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
 gi|228270770|gb|EEK12172.1| threonine--tRNA ligase [Staphylococcus hominis SK119]
          Length = 645

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F +  +     L  + ++ +     +     
Sbjct: 19  GTTTDDIAQSISPGLR------KKAVAGKFNNQLVDLTRPLEEDGAIEIVTPGSDEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  I G      G  I   G  +D    + ++S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRIYGDVKFGVGPVI-EGGFYYDFDMDEKVSSDDFEKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +  ++++R++A            Y   +     E E+  +++      LC G HV 
Sbjct: 132 ENYKIERKVVSRKEAKDFF----KDDPYKLELIDAIPEDENVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|297835784|ref|XP_002885774.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331614|gb|EFH62033.1| hypothetical protein ARALYDRAFT_319286 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 650

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 15/194 (7%)

Query: 563 GILRTE-MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           G  +TE  ++VL  +  + + L I H+  H++  A+  +        G  I  +G  +D 
Sbjct: 59  GPKKTEPSTVVLPSNESSDKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWID-NGFYYDF 117

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVR 677
              +P+T  +LK I+  ++ II++NLP++   ++RE+A        +   Y     + ++
Sbjct: 118 DM-EPLTDKDLKRIKKEMDRIISRNLPLLREEVSREEAKER--IMAINEPYKMEILEGIK 174

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
              +     G     LC G HV +TG+I     V   S+     R     G   R  L  
Sbjct: 175 EEPITVYHIGNEWWDLCAGPHVETTGKINK-KAVELESVAGAYWR-----GDEKRQMLQR 228

Query: 738 QDEKLKSLASFLKV 751
                      LK 
Sbjct: 229 IYGTAWESEEQLKA 242


>gi|296446450|ref|ZP_06888394.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
 gi|296256085|gb|EFH03168.1| threonyl-tRNA synthetase [Methylosinus trichosporium OB3b]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H   HLL  A+  +        G  I  +G  +D   S+P T  +L +IE
Sbjct: 63  EDPRALELIRHDCAHLLAEAVQELFPGTQVTIGPVI-ENGFYYDFYRSEPFTPDDLPAIE 121

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +I+A++  +   +  R+ A     A   G  +   +       ED  ++       
Sbjct: 122 KKMREIVARDAAITKEVWTRDQAKTFFTAR--GEAFKRELIESIPGGEDLKIYRQGHWLD 179

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           LC G H+ S G++     ++    +     R
Sbjct: 180 LCRGPHLPSIGKVGTAFKLMK---VAGAYWR 207


>gi|291559712|emb|CBL38512.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [butyrate-producing bacterium SSC/2]
          Length = 641

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+A+H+L  A+  +        G  I  +G  +D+    P T  +L+ IE  +  I
Sbjct: 68  HAFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYDMEKDTPFTQEDLEKIEKEMKKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +NL + +    R++AIA          Y   +     E      +       LC G H
Sbjct: 127 VKENLEITSFTKPRDEAIAF--MKERNEPYKVELIEDLPEDSVISFYQQGEFVDLCAGPH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + +T  +    + S   I     R
Sbjct: 185 LMTTKPVKAFKLTS---IAGAYWR 205


>gi|317499591|ref|ZP_07957854.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893140|gb|EFV15359.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 641

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+A+H+L  A+  +        G  I  +G  +D+    P T  +L+ IE  +  I
Sbjct: 68  HAFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYDMEKDTPFTQEDLEKIEKEMKKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +NL + +    R++AIA          Y   +     E      +       LC G H
Sbjct: 127 VKENLEITSFTKPRDEAIAF--MKERNEPYKVELIEDLPEDSVISFYQQGEFVDLCAGPH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + +T  +    + S   I     R
Sbjct: 185 LMTTKPVKAFKLTS---IAGAYWR 205


>gi|301156314|emb|CBW15785.1| threonyl-tRNA synthetase [Haemophilus parainfluenzae T3T1]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  V+   ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVIKTPVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +        ++    +     R ++      R +     +K K LA +L         
Sbjct: 187 VPNMRFCQHFKLMK---VAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAK 241

Query: 759 R 759
           R
Sbjct: 242 R 242


>gi|145631389|ref|ZP_01787160.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144983048|gb|EDJ90552.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|300914721|ref|ZP_07132037.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
 gi|300889656|gb|EFK84802.1| Threonyl/alanyl tRNA synthetase SAD [Thermoanaerobacter sp. X561]
          Length = 634

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ +++AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTDRPFTTEDFEAIEQEMNKIIKEDYKLERFVLPKDEAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              G  Y   +     E E+   +       LC G H+ STG +  + ++S + 
Sbjct: 148 EEKGEPYKVELIEEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLSVAG 201


>gi|18311304|ref|NP_563238.1| threonyl-tRNA synthetase [Clostridium perfringens str. 13]
 gi|110801319|ref|YP_697012.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|168205151|ref|ZP_02631156.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|168210374|ref|ZP_02635999.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|168213233|ref|ZP_02638858.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|168216713|ref|ZP_02642338.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
 gi|182625789|ref|ZP_02953556.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|22654117|sp|Q8XI02|SYT_CLOPE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123148532|sp|Q0TMX8|SYT_CLOP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|18145987|dbj|BAB82028.1| threonine-tRNA ligase [Clostridium perfringens str. 13]
 gi|110675966|gb|ABG84953.1| threonyl-tRNA synthetase [Clostridium perfringens ATCC 13124]
 gi|170663286|gb|EDT15969.1| threonyl-tRNA synthetase [Clostridium perfringens E str. JGS1987]
 gi|170711530|gb|EDT23712.1| threonyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170715283|gb|EDT27465.1| threonyl-tRNA synthetase [Clostridium perfringens CPE str. F4969]
 gi|177908945|gb|EDT71432.1| threonyl-tRNA synthetase [Clostridium perfringens D str. JGS1721]
 gi|182381219|gb|EDT78698.1| threonyl-tRNA synthetase [Clostridium perfringens NCTC 8239]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 15/197 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + +   +I  G+       +    GI        R I+  + SL +        Q
Sbjct: 15  EAGLSIFEIAQSISQGLA------RNACCGILNGKVEDLRFIVNEDSSLEICTFDSKEGQ 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NH+A+H+L  A+  +        G  I  +G  +D    KP ++ +L  +E+ +  I
Sbjct: 69  HAFNHTASHVLAAAVKRLFPQDKLAIGPSID-NGFYYDFDTEKPFSADQLNKLEEEMKKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTH 698
           I +N  +    + R +A+      +    Y   +     E E    +       LC G H
Sbjct: 128 IKENPEIKRFELPRNEALEL----MKDEPYKVELINDLPEGEVISFYQIGDFVDLCAGPH 183

Query: 699 VSSTGEIMLLYIVSESS 715
           + +   I  + ++  + 
Sbjct: 184 LMAVKPIKAVKLLRSTG 200


>gi|256751279|ref|ZP_05492159.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749834|gb|EEU62858.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 634

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ +++AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTDRPFTTEDFEAIEQEMNKIIKEDYKLERFVLPKDEAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              G  Y   +     E E+   +       LC G H+ STG +  + ++S + 
Sbjct: 148 EEKGEPYKVELIEEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLSVAG 201


>gi|288818602|ref|YP_003432950.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|288788002|dbj|BAI69749.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
 gi|308752193|gb|ADO45676.1| threonyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 637

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 11/144 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
           + HS  H++  AL  I G      G    T +G  +DV      ++  +L  IE+ + +I
Sbjct: 67  LRHSLAHIMAQALKEIYGKEKVHLGVGPTTEEGFYYDVEIEGVRLSEDDLSKIEEKMREI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I +N P++ R ++RE+AI          KY   +       +   V+       LC G H
Sbjct: 127 IQRNYPILRRELDREEAIKLFEKLR--EKYKLEIIKGISPDDVISVYEQNDFVDLCRGPH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + +TG      +     I     R
Sbjct: 185 LPTTGMAGAFKLT---HISGAYWR 205


>gi|260582696|ref|ZP_05850484.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
 gi|260094262|gb|EEW78162.1| threonyl-tRNA synthetase [Haemophilus influenzae NT127]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|254411303|ref|ZP_05025080.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196181804|gb|EDX76791.1| threonyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 609

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 23/193 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D    +P T  +LK+I+  +  I+ 
Sbjct: 32  IRHTASHVMAMAVQKLFPGTQVTIGPWI-ENGFYYDFAKPEPFTEQDLKAIKKEMVKILK 90

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDR---VRVVSVEYEDGGVHSSALCGGTHVSS 701
           + LP++   ++RE+A        LG  Y           +     G     LC G HV +
Sbjct: 91  RKLPLIREEVSREEAERR--IKELGEPYKLEILQDLEDPITLYHLGEDWWDLCAGPHVET 148

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG--- 758
           T +I     +   S+     R +A   Q  R +    +            +   +     
Sbjct: 149 TADIHP-KAIDLESVAGAYWRGDASKAQLQRIYGTAWE------------TPEQLTEYKR 195

Query: 759 -RVEEIWEEYRKL 770
            + E +  ++RKL
Sbjct: 196 RKQEALKRDHRKL 208


>gi|167766936|ref|ZP_02438989.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
 gi|167710911|gb|EDS21490.1| hypothetical protein CLOSS21_01453 [Clostridium sp. SS2/1]
          Length = 645

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+A+H+L  A+  +        G  I  +G  +D+    P T  +L+ IE  +  I
Sbjct: 72  HAFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYDMEKDTPFTQEDLEKIEKEMKKI 130

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + +NL + +    R++AIA          Y   +     E      +       LC G H
Sbjct: 131 VKENLEITSFTKPRDEAIAF--MKERNEPYKVELIEDLPEDSVISFYQQGEFVDLCAGPH 188

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + +T  +    + S   I     R
Sbjct: 189 LMTTKPVKAFKLTS---IAGAYWR 209


>gi|189485254|ref|YP_001956195.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287213|dbj|BAG13734.1| threonyl-tRNA synthetase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 598

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I  DG  +D    +  T  +L  IE+ + +II 
Sbjct: 30  LRHSTAHIMAAAVMELFPGTKVAIGPSI-EDGFYYDFDREQAFTPGDLIRIEEKMAEIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            + P +   + + +A+        G KY        +E +   ++ S     LC G H++
Sbjct: 89  ADYPFICSYVPKGEAVKEF--REKGEKYKAE-IASQIEDDKVSMYRSGNFTDLCRGPHIN 145

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STGE+    ++S   I     R
Sbjct: 146 STGELKYFKLLS---IAGAYWR 164


>gi|209695239|ref|YP_002263168.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
 gi|208009191|emb|CAQ79445.1| threonyl-tRNA synthetase [Aliivibrio salmonicida LFI1238]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+     +T  +L  IE  + ++  
Sbjct: 71  IRHSCAHLLGHAVKQLFPEAKMAIGPTID-NGFYYDIDMEHSLTQDDLDKIEKRMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
               V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV
Sbjct: 130 TKYQVIKKNVSWQEARDAFDAR--GETYKIAILDENVSKDDRPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        I+S   +     R
Sbjct: 188 PNMSFCQNFKILS---VAGAYWR 207


>gi|218438366|ref|YP_002376695.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
 gi|218171094|gb|ACK69827.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7424]
          Length = 608

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 3/139 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G   T +G  +D    +P T  +LK+I+  +  II 
Sbjct: 30  IRHTTSHIMAMAVQQLFPKAQVTIGPW-TENGFYYDFDTPEPFTEEDLKAIKKEMVKIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           + LPV+   + RE+A     A     K          +     G     LC G HV +T 
Sbjct: 89  RKLPVIREEVTREEAERRIQAINEPYKLEILEGIQEPITIYHLGDKWWDLCAGPHVETTA 148

Query: 704 EIMLLYIVSESSIRAGIRR 722
           EI     +   ++     R
Sbjct: 149 EIDP-KAIDLENVAGAYWR 166


>gi|302035784|ref|YP_003796106.1| threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
 gi|300603848|emb|CBK40180.1| Threonyl-tRNA synthetase [Candidatus Nitrospira defluvii]
          Length = 651

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS+TH++  A+  +  +     G  +  DG  +D    +P T  +L+ IE    +I+ 
Sbjct: 75  YRHSSTHIMAQAVKEVFPTAQLTIGPALD-DGFYYDFAFDRPFTPEDLEKIEARAIEIMK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           + L V    ++++DAI        G  Y   +     +     ++       LC G H+ 
Sbjct: 134 RGLTVTRSELSKQDAIKFFQER--GEGYKVELINSFDDASPISLYRQGEFVDLCRGPHLP 191

Query: 701 STGEIMLLYIVSESS 715
           +TG +    ++S   
Sbjct: 192 TTGYVGAFKLLSTGG 206


>gi|325578419|ref|ZP_08148554.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160155|gb|EGC72284.1| threonine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 78/224 (34%), Gaps = 26/224 (11%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++  V+  A  I    A +E    + E  L +           I HS  HLL HA+  + 
Sbjct: 39  RVNGVRHDACDIINEDANLEIITAKDEDGLEI-----------IRHSCAHLLGHAIKQLF 87

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
                  G  I  +G  +DV   + +T  ++ +IE  + ++   N  V+   ++ ++A  
Sbjct: 88  PDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAKTNYDVIKTPVSWQEARD 146

Query: 662 SGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +      G  Y       +  R  +        +   +C G HV +        ++    
Sbjct: 147 TFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPHVPNMRFCHNFKLMK--- 200

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           +     R ++      R +     +K K LA +L         R
Sbjct: 201 VAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|300722778|ref|YP_003712069.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629286|emb|CBJ89885.1| threonine tRNA synthetase [Xenorhabdus nematophila ATCC 19061]
          Length = 642

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 76/198 (38%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPIID-NGFYYDVDLDRSLTKEDIELLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + +  ++A  +  A   G +Y  ++   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVTWQEARDAFVAR--GEEYKIQILDENISHDDHPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R                ++ L+ +       +  +   
Sbjct: 188 PNMRFCHHFKL---QKVAGAYWR------------GNSDNKMLQRIYGTAWADKKQLNAY 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           ++ + E  ++      K+
Sbjct: 233 LQRLEEAAKRDHRKIGKQ 250


>gi|317487453|ref|ZP_07946240.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
 gi|316921312|gb|EFV42611.1| threonyl-tRNA synthetase [Bilophila wadsworthia 3_1_6]
          Length = 646

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 29/200 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H++  A+  +  +     G  I  +G  +D     P +  + ++IE  +  II 
Sbjct: 73  IRHSAAHVMAAAVKKLFPAAKVTIGPSI-ENGFYYDFDVETPFSPDQFEAIEAEMQRIID 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGT 697
             +P     +++ DA+             +  +V  +E  + G            LC G 
Sbjct: 132 AAVPFERMDISKADAVKLFN------DMGEPYKVELIEGLEDGTITLYRNGDFVDLCRGP 185

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ + G +    ++S   +     R               ++  L  + +       ++ 
Sbjct: 186 HIPNAGFVKAFKLLS---VAGAYWR------------GDEKNRMLSRIYATAFADAKDLK 230

Query: 758 GRVEEIWEEYRKLQLIHAKR 777
             +  I E  R+      K 
Sbjct: 231 EYLNRIEEAKRRDHRKLGKE 250


>gi|229096864|ref|ZP_04227833.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|228686474|gb|EEL40383.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 639

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID  +  +++  HSA H+L  A+  + G  +
Sbjct: 37  RKAVAGKVNDQLYDLRRNIEENAEVEIITIDSNDGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMRNIIKENISIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G HV ST  +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHVPSTSYLKAFQLTHVSG 206


>gi|261339515|ref|ZP_05967373.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288318328|gb|EFC57266.1| threonine--tRNA ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 622

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 SNYDVIKKKVSWHEARETFVKR--GESYKVSILDENISHDDKPGLYHHEEYIDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKIAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|284006267|emb|CBA71503.1| threonyl-tRNA synthetase [Arsenophonus nasoniae]
          Length = 640

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  +L+ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPTTKMAIGPII-ENGFYYDVDLEHALTQEDLEKLEQRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
           +N  V+ + ++ ++A  +  A   G  Y  ++   ++  +D            +C G HV
Sbjct: 130 KNYDVIKKRVSWQEARDTFVAR--GEDYKVKILDENINKDDHPRLYYHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     +     R
Sbjct: 188 PNMRFCHYFKL---QKVAGAYWR 207


>gi|145634324|ref|ZP_01790034.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
 gi|145268304|gb|EDK08298.1| threonyl-tRNA synthetase [Haemophilus influenzae PittAA]
          Length = 643

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDLDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|326623540|gb|EGE29885.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 622

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  DA  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|83309439|ref|YP_419703.1| threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
 gi|123740560|sp|Q2WAI1|SYT_MAGMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|82944280|dbj|BAE49144.1| Threonyl-tRNA synthetase [Magnetospirillum magneticum AMB-1]
          Length = 638

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D     P T  +L  IE  + +I+ 
Sbjct: 72  LRHDAAHVMAEAVKELYPETQVTIGPSI-ENGFYYDFARPTPFTPDDLAKIEARMAEIVD 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  +     +R+ A+     A  G KY   +       +  G++       LC G H+ 
Sbjct: 131 RDEAITREEWDRDAAVKFFEDA--GEKYKAEIIASIPADQKIGLYRQGNFIDLCRGPHLP 188

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST ++          +     R
Sbjct: 189 STAKLG--KAFKLMKLAGAYWR 208


>gi|163760291|ref|ZP_02167374.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
 gi|162282690|gb|EDQ32978.1| threonyl-tRNA synthetase [Hoeflea phototrophica DFL-43]
          Length = 668

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H++  A+  +        G  I  +G  +D   ++P T  +L  IE  +
Sbjct: 68  RALELIRHDAAHVMAEAVQELFPGTQVTIGPVI-ENGFYYDFAKNEPFTPEDLPVIEKKM 126

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA+N P    + +R++A      A  G  Y   +       ED  ++       +C 
Sbjct: 127 KEIIARNKPFTKEVWSRDEA--RRVFAEKGEAYKVELIESINSDEDLKIYRQGDWFDMCR 184

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG+I     ++    +     R
Sbjct: 185 GPHMASTGQIGTAFKLMK---VAGAYWR 209


>gi|687792|gb|AAC43729.1| putative threonyl-tRNA synthetase; similar to E. coli threonyl-tRNA
           synthetase SwissProt Accession Number P00955
           [Haemophilus influenzae]
 gi|1587744|prf||2207242E ORF 4
          Length = 443

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|146293114|ref|YP_001183538.1| threonyl-tRNA synthetase [Shewanella putrefaciens CN-32]
 gi|166225500|sp|A4Y706|SYT_SHEPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145564804|gb|ABP75739.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           putrefaciens CN-32]
          Length = 642

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  +++++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDIDLEHKLTQDDIEALEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G +Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFAAR--GEEYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   I     R
Sbjct: 188 PNMRFCQHFKLMS---IAGAYWR 207


>gi|148239112|ref|YP_001224499.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
 gi|166225511|sp|A5GJT7|SYT_SYNPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147847651|emb|CAK23202.1| Threonyl-tRNA synthetase [Synechococcus sp. WH 7803]
          Length = 610

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 87/245 (35%), Gaps = 23/245 (9%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           +N + L I HS +H++  A+  +  +     G   T  G  +D  + +P T A+LK+I+ 
Sbjct: 30  ENEQLLRIRHSMSHVMAMAVQQLFPNARVTIGPW-TESGFYYDFDNPEPFTEADLKAIKK 88

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGG 696
            +  II + LP+    ++R +A     A     K          +     G     LC G
Sbjct: 89  GMIKIINKKLPLERVEVSRSEAEEKIKAQNEPYKLEILEGLQEPITLYTLGEDWWDLCAG 148

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV +TG++         S+     R     G   ++ L          A  L       
Sbjct: 149 PHVENTGQLNA-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWETAEQL------- 195

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
                    E+++ +    +R  +   +DL    I D      +        ++ +++  
Sbjct: 196 --------AEHKRRKEEALRRDHRRIGKDLDLFSIEDEAGAGLVFWHPRGARMRLLIEEF 247

Query: 817 QKKIQ 821
            ++  
Sbjct: 248 WRQAH 252


>gi|119025818|ref|YP_909663.1| threonyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765402|dbj|BAF39581.1| threonyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
          Length = 711

 Score = 75.5 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 70/217 (32%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 82  ELHDGDVVEPIALDSEDGVAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 139

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
              P T  +LK IE  +  II  +     R++  E+A+A  A              + D 
Sbjct: 140 VETPFTPEDLKEIEKRMQRIIKSSQSFRRRVVTEEEALAEEADQPYKLELIKDKEAHLDP 199

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 200 EAATEISGKELSFYDNVDREGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 253

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 254 --GSEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 288


>gi|16124719|ref|NP_419283.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|221233433|ref|YP_002515869.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
 gi|22654137|sp|Q9AAX8|SYT_CAUCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783515|sp|B8GZS7|SYT_CAUCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13421637|gb|AAK22451.1| threonyl-tRNA synthetase [Caulobacter crescentus CB15]
 gi|220962605|gb|ACL93961.1| threonyl-tRNA synthetase [Caulobacter crescentus NA1000]
          Length = 655

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H   H+L  A+  +        G  +  DG  +D    +P +  +L+ IE  + +I+
Sbjct: 75  TIRHDTAHVLAEAVQELFPGTQVTIGPNV-EDGFYYDFARDEPFSLDDLEKIEKRMKEIV 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++  +   + +R +AIA      +G +Y  ++     + +   V+       LC G H+
Sbjct: 134 DRDEKITREVWDRNEAIAHFDG--IGEQYKAQIIRDLPDTDTITVYRQGNWKDLCRGPHL 191

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +        + +     R                + +L+ +      S+ ++   
Sbjct: 192 PSTKHVG--KAFKLTKLAGAYWR------------GDQNNAQLQRIYGTAWASEADLEAH 237

Query: 760 VEEIWEEYRKLQLIHAK 776
           ++ I E  ++      K
Sbjct: 238 LKRIEEAEKRDHRKLGK 254


>gi|327439263|dbj|BAK15628.1| threonyl-tRNA synthetase [Solibacillus silvestris StLB046]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G      I  +  +  + ++ +  +  +     + HS  HL   A+  +        G  
Sbjct: 41  GKINGTLIDAKTGIEQDGAIEIITNKSDEALEILRHSTAHLTAQAVKRLYPDAKLGIGPV 100

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I   G  +D+    PIT+ +L +IE  +  IIA+N+ +  + ++R++A        +G +
Sbjct: 101 ID-SGFYYDIDSPTPITAEDLPAIEKEMKKIIAENIEIERKNVSRDEAQKIYE--EVGDE 157

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
           Y   +       +   ++       LC G HV STG++    ++S + 
Sbjct: 158 YKLELLEAIPADDQVSIYYQGDFFDLCRGVHVPSTGKLKEFKLLSLAG 205


>gi|301170119|emb|CBW29723.1| threonyl-tRNA synthetase [Haemophilus influenzae 10810]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAKYL-TRLEEAAKR 242


>gi|229087132|ref|ZP_04219282.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228696200|gb|EEL49035.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 94/246 (38%), Gaps = 37/246 (15%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G      I     +  + ++ ++T+D +    +   HS  HLL  AL  +    V
Sbjct: 36  KKAVAGKLNDEMIDLSTPIEEDGAVSIITLDSEEGLYILR-HSTAHLLAQALKRLY-KDV 93

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                 +  +G  +D+   + IT  + K IE  +  I+ +NL +V   + R +A+     
Sbjct: 94  KLGIGPVIENGFYYDIDMEEAITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRY-- 151

Query: 666 ALLGTKYNDRVRVVSVE----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                +  D +++  +           YE G      LC G H+ STG+I +  ++S   
Sbjct: 152 ----EEIGDELKLDLINDLPEDAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS--- 202

Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           +     R                ++ L+ +     V +  +   +  + EE ++      
Sbjct: 203 VAGAYWR------------GDSDNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKL 249

Query: 776 KRKLQL 781
            ++L+L
Sbjct: 250 GKELKL 255


>gi|169347105|ref|ZP_02866047.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
 gi|169296788|gb|EDS78917.1| threonyl-tRNA synthetase [Clostridium perfringens C str. JGS1495]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 9/194 (4%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + +   +I  G+       +    GI        R I+  + SL +        Q
Sbjct: 15  EAGLSIFEIAQSISQGLA------RNACCGILNGKVEDLRFIVNEDSSLEICTFDSKEGQ 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NH+A+H+L  A+  +        G  I  +G  +D    KP ++ +L  +E+ +  I
Sbjct: 69  HAFNHTASHVLAAAVKRLFPQDKLAIGPSID-NGFYYDFDTEKPFSADQLNKLEEEMKKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N  +    + R +A+          +  ND      + +   G     LC G H+ +
Sbjct: 128 IKENPEIKRFELPRNEALELMRDEPYKVELINDLPEGEVISFYQIGDFVD-LCAGPHLMA 186

Query: 702 TGEIMLLYIVSESS 715
              I  + ++  + 
Sbjct: 187 VKPIKAVKLLRSTG 200


>gi|168188008|ref|ZP_02622643.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
 gi|169294168|gb|EDS76301.1| threonyl-tRNA synthetase [Clostridium botulinum C str. Eklund]
          Length = 637

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I  +G  +D       T   L+ IE  +N I+
Sbjct: 70  TLRHTASHILAQAVKRLYPEVKLAIGPSI-ENGFYYDFDAEFSFTPEILEKIEKEMNKIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NL +     +REDAI           Y   +     E      +       LC G HV
Sbjct: 129 KENLQLKKFTKSREDAIEF--MKERNEDYKVELIEDLPEDAVISFYEQGDFVDLCAGPHV 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST E+  + ++S   +     R
Sbjct: 187 PSTKEVKAIKLLS---VAGAYWR 206


>gi|120598808|ref|YP_963382.1| threonyl-tRNA synthetase [Shewanella sp. W3-18-1]
 gi|166225502|sp|A1RJI3|SYT_SHESW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|120558901|gb|ABM24828.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella sp.
           W3-18-1]
          Length = 642

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  +++++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDIDLEHKLTQDDIEALEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G +Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFAAR--GEEYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   I     R
Sbjct: 188 PNMRFCQHFKLMS---IAGAYWR 207


>gi|24373852|ref|NP_717895.1| threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
 gi|73919825|sp|Q8EER9|SYT_SHEON RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24348259|gb|AAN55339.1|AE015671_6 threonyl-tRNA synthetase [Shewanella oneidensis MR-1]
          Length = 642

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  +++++E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDIDLEHKLTQDDIEALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G +Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFAAR--GEEYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   I     R
Sbjct: 188 PNMRFCQHFKLMS---IAGAYWR 207


>gi|296102767|ref|YP_003612913.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295057226|gb|ADF61964.1| threonyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 642

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 TNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHQEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKIAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|261880409|ref|ZP_06006836.1| alpha-amylase [Prevotella bergensis DSM 17361]
 gi|270332878|gb|EFA43664.1| alpha-amylase [Prevotella bergensis DSM 17361]
          Length = 716

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++  N+ +    H+A HLL+  +  + G   S   + I     +      +     + K 
Sbjct: 567 LNDHNKEEFPPAHTAEHLLNQLMGRMFGCERS-CEAHIERKKSKMSFVLDRKPDRKQEKE 625

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE+ +N++I  +LPV     ++++         L    +  +++V +     G      C
Sbjct: 626 IEEQMNELIKADLPVTYEYFDKDNLPEEFDPDRLPENCSQTIQLVRI-----GDFDLCPC 680

Query: 695 GGTHVSSTGEIMLLYIVSES-SIRAGIRRIEAIT 727
            G HV ST +I    ++  + +      RI    
Sbjct: 681 IGKHVRSTSQIGRFELLGTNWNQEKLTYRIRFKV 714


>gi|319426373|gb|ADV54447.1| threonyl-tRNA synthetase [Shewanella putrefaciens 200]
          Length = 642

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  +++++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDIDLEHKLTQDDIEALEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G +Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFAAR--GEEYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   I     R
Sbjct: 188 PNMRFCQHFKLMS---IAGAYWR 207


>gi|229115852|ref|ZP_04245250.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228667595|gb|EEL23039.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
          Length = 640

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID  +  +++  HSA H+L  A+  + G  +
Sbjct: 37  RKAVAGKVNDQLYDLRRNIEENAEVEIITIDSNDGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMRNIIKENISIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G HV STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHVPSTGYLKAFQLTHVSG 206


>gi|71899804|ref|ZP_00681954.1| TGS [Xylella fastidiosa Ann-1]
 gi|71730395|gb|EAO32476.1| TGS [Xylella fastidiosa Ann-1]
          Length = 332

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  DG  +D+   +P T  +L +IE  + ++IA
Sbjct: 72  IRHSCAHLVGHAVKQLYPEAKMVIGPVI-ADGFYYDIYSKRPFTPEDLAAIEQRMVELIA 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSA----LCGGTHV 699
           Q+  VV  I  R D +        G  Y  R+      E    G++       +C G HV
Sbjct: 131 QDYDVVKHITARHDVVRLFKER--GEDYKLRLIEDMGPEVTAMGIYHHQEYVDMCRGPHV 188

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +     I     R               ++E+L+ +       +  +   
Sbjct: 189 PNTRFLKAFRLT---RISGAYWR------------GDTKNEQLQRIYGTAWADKKQLEAY 233

Query: 760 VEEIWEEYRKLQLIHAKRK 778
           ++ + +  ++      K +
Sbjct: 234 MQRLQDAEKRDHRKIGKAQ 252


>gi|309973051|gb|ADO96252.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2846]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|110633361|ref|YP_673569.1| threonyl-tRNA synthetase [Mesorhizobium sp. BNC1]
 gi|123058100|sp|Q11JM1|SYT_MESSB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110284345|gb|ABG62404.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chelativorans
           sp. BNC1]
          Length = 656

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 9/150 (6%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H A H+L  A+  +        G  I  +G  +D   ++P T  +L  IE
Sbjct: 66  EDPRALELIRHDAAHVLAEAVQELWPGTQVTIGPVI-ENGFYYDFARNEPFTLDDLPVIE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +I+ +N      +  R+ A    A    G  Y   +     E +D  ++       
Sbjct: 125 KKMREIVDRNKRFSKEVWPRDKAKKVFADK--GESYKVELIDAIPEDQDLKIYFQGDWFD 182

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           LC G H++STG+I          +     R
Sbjct: 183 LCRGPHMASTGQIG--KAFKLMKVAGAYWR 210


>gi|145636075|ref|ZP_01791745.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229844174|ref|ZP_04464315.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
 gi|145270597|gb|EDK10530.1| threonyl-tRNA synthetase [Haemophilus influenzae PittHH]
 gi|229813168|gb|EEP48856.1| threonyl-tRNA synthetase [Haemophilus influenzae 6P18H1]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|16273277|ref|NP_439518.1| threonyl-tRNA synthetase [Haemophilus influenzae Rd KW20]
 gi|260580800|ref|ZP_05848626.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
 gi|1174548|sp|P43014|SYT_HAEIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1574199|gb|AAC23014.1| threonyl-tRNA synthetase (thrS) [Haemophilus influenzae Rd KW20]
 gi|260092617|gb|EEW76554.1| threonyl-tRNA synthetase [Haemophilus influenzae RdAW]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|326391979|ref|ZP_08213481.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325991980|gb|EGD50470.1| threonyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 634

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 97/240 (40%), Gaps = 25/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ +++AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTERPFTTEDFEAIEQEMNRIIKEDYKLERFVLPKDEAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                 Y   +     E E+   +       LC G H+ STG +  + ++S         
Sbjct: 148 KEKDEPYKVELIEEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLS--------- 198

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
               + G  A      +++ L+ +       + +++ +   + EE +K       ++L L
Sbjct: 199 ----VAG--AYWKGDEKNKMLQRIYGI-SFPKKSMLDQYLHMLEEAKKRDHRKLGKELDL 251


>gi|291279885|ref|YP_003496720.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
 gi|290754587|dbj|BAI80964.1| threonyl-tRNA synthetase [Deferribacter desulfuricans SSM1]
          Length = 640

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 11/162 (6%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    ++ +  +        + HS  HL+  A+  +        G  I  DG  +D    
Sbjct: 50  LSDGDTVRIITEKDPEALEILRHSTAHLMAQAVQRLFKDVKVTIGPVI-EDGFYYDFDKE 108

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
            P T  +L+ IE+ +  I  +NLP+  + + +E+AI        G  Y     +  ++ E
Sbjct: 109 TPFTETDLEKIEEEMKKIAQENLPIRRKELKKEEAIKLFKDK--GEDYKIE-IINEIDDE 165

Query: 685 DGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V+       LC G H+ STG+I    ++S   +     R
Sbjct: 166 YVSVYEQGEFVDLCRGPHLESTGKIKHFKLLS---VAGAYWR 204


>gi|148825906|ref|YP_001290659.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|166223344|sp|A5UBX5|SYT_HAEIE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|148716066|gb|ABQ98276.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|289422357|ref|ZP_06424203.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
 gi|289157192|gb|EFD05811.1| threonine--tRNA ligase [Peptostreptococcus anaerobius 653-L]
          Length = 641

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 19/178 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H++ H+   A+  +        G  I  +G  +D+     +   +L+ IE  +  I+ 
Sbjct: 71  FRHTSAHIFAQAVKRLWPQAKLAIGPAID-NGFYYDIDLDYRLVPEDLEKIEAEMKKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    ++RE+AI       +G  Y   +       E   ++       LC G H+ 
Sbjct: 130 EDLKIEGFEVSREEAIKM--MKEIGEDYKVEMIEDLPAEEVISMYRQGDFVDLCRGPHLQ 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----QDEKLKSLASFLKVSQG 754
           ST ++    +    SI     R     G      L        EK K L ++LK+ + 
Sbjct: 188 STKKVKAFKL---QSIAGAYWR-----GDENNKMLQRVYGTSFEKNKDLEAYLKMLEE 237


>gi|68250118|ref|YP_249230.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
 gi|81335458|sp|Q4QK77|SYT_HAEI8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|68058317|gb|AAX88570.1| threonyl-tRNA synthetase [Haemophilus influenzae 86-028NP]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|78222623|ref|YP_384370.1| threonyl-tRNA synthetase [Geobacter metallireducens GS-15]
 gi|78193878|gb|ABB31645.1| Ser-tRNA(Thr) hydrolase [Geobacter metallireducens GS-15]
          Length = 645

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 97/272 (35%), Gaps = 31/272 (11%)

Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           G     A+     L   + + +  +        I HS +HL+  A+  +        G  
Sbjct: 49  GKINGVAVDLTAPLVDGVKVEIITEKSPEALEIIRHSTSHLMAQAVKELFPQAKVTIGPA 108

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           +  +G  +D       T  +L+ IE  + ++   +L +  +++++++AI       +G  
Sbjct: 109 V-ENGFYYDFDVDHAFTPEDLEKIETRMRELAKSDLKLERQVLSKDEAIKLF--RDMGEN 165

Query: 672 YNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   + + ++      ++       LC G H+ ST       + S             + 
Sbjct: 166 YKVEL-IEAIGDNTVSLYRQGDFVDLCRGPHLPSTANCRAFKLTS-------------LA 211

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A      +++ L+ +       +  +   +E I E  R+      +        +L 
Sbjct: 212 G--AYWRGDEKNKMLQRVYGTAFADKKELDAYLERIEEAKRRDHRKLGR--------ELD 261

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
               +D      +I   +   L+++++  ++K
Sbjct: 262 LFSFSDEVGAGFVIWHPNGAMLRTILEDFERK 293


>gi|237815491|ref|ZP_04594489.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
 gi|237790328|gb|EEP64538.1| threonyl-tRNA synthetase [Brucella abortus str. 2308 A]
          Length = 693

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 13/175 (7%)

Query: 558 AIVERGILRTEMSLVLTID--YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             V         S  L I      R    I H   H+L  A+  +        G  I  +
Sbjct: 80  GTVRDLSDPLGASGKLEIITREDPRALELIRHDTAHVLAEAVQELFPGTQVTIGPVI-EN 138

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +    G  Y   
Sbjct: 139 GFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK--GESYKVE 196

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +       +D  ++       LC G H++STG+I     ++    +     R +A
Sbjct: 197 LVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYWRGDA 248


>gi|256830760|ref|YP_003159488.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256579936|gb|ACU91072.1| threonyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 644

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  +  S     G  +   G  +D    +P T  +L+ IE  +   + 
Sbjct: 70  LRHSAAHVMAEAVKELFPSAKVTIGPDV-ESGFYYDFDFERPFTPEDLEKIEARMTASVV 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
            N P     M+  +A A  A+  +G  Y     +  +  +   ++       LC G H+ 
Sbjct: 129 ANQPFSREEMSAVEARALFAS--MGETYKLE-IIDDLGADQVSLYRHGNFVDLCRGPHLP 185

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +  + + S   +     R
Sbjct: 186 STGFLQAVKLTS---VAGAYWR 204


>gi|332041318|gb|EGI77680.1| threonyl-tRNA synthetase [Hylemonella gracilis ATCC 19624]
          Length = 644

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+++ +P T  ++ +IE  +  +IA
Sbjct: 71  IRHSCAHLVGHAVKQLYPTARMVIGPVI-EEGFYYDISYERPFTPDDVAAIEARMKALIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           Q+  VV ++  R + I        G  Y  R+          G++       +C G HV 
Sbjct: 130 QDYDVVKKMTPRAEVIEVFKQR--GEDYKLRLIEDMPNETAMGLYYHQEYVDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESS 715
           +T  +    +   + 
Sbjct: 188 NTRFLKAFKLTKLAG 202


>gi|307266242|ref|ZP_07547784.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918772|gb|EFN49004.1| threonyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 634

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 97/240 (40%), Gaps = 25/240 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           ++   G F    +     +  +  L +LT D +  +++   H+++H+L  A+  +     
Sbjct: 32  KEAVGGKFNGKVVELNTKIEEDGKLEILTFDDEEGKKI-YWHTSSHILAQAVKRLFKDVK 90

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D    +P T+ + ++IE  +N II ++  +   ++ +++AI     
Sbjct: 91  LAIGPAID-NGFYYDFDTERPFTTEDFEAIEQEMNRIIKEDYKLERFVLPKDEAIK--LM 147

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                 Y   +     E E+   +       LC G H+ STG +  + ++S         
Sbjct: 148 KEKDEPYKVELIEEIPEGEEISFYKQGEFTDLCAGPHLMSTGMVKTIKLLS--------- 198

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
               + G  A      +++ L+ +       + +++ +   + EE +K       ++L L
Sbjct: 199 ----VAG--AYWKGDEKNKMLQRIYGI-SFPKKSMLDQYLHMLEEAKKRDHRKLGKELDL 251


>gi|52081397|ref|YP_080188.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52786773|ref|YP_092602.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|319647305|ref|ZP_08001527.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
 gi|52004608|gb|AAU24550.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52349275|gb|AAU41909.1| ThrS [Bacillus licheniformis ATCC 14580]
 gi|317390652|gb|EFV71457.1| threonyl-tRNA synthetase 1 [Bacillus sp. BT1B_CT2]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +   +V      +  +G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  MRHSTAHLMAQAIKRLY-KNVKLGVGPVIENGFYYDVDLEEALTPEDLPKIEKEMKKIVG 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NLP+V + ++RE+A A    A +G      +     E E   ++       LC G HV 
Sbjct: 133 ENLPIVRKEVSREEARALF--AEIGDDLKLELLDAIPEGETVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESS 715
           STG+I    ++S + 
Sbjct: 191 STGKIKEFKLLSLAG 205


>gi|312882276|ref|ZP_07742021.1| Threonyl/alanyl tRNA synthetase SAD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370043|gb|EFP97550.1| Threonyl/alanyl tRNA synthetase SAD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 219

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 73/216 (33%), Gaps = 43/216 (19%)

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH---HAIVERG 563
             Q   V+   T F+   GGQ  D G   GD I L          G F+       V   
Sbjct: 25  DDQTFHVILSSTIFHPRGGGQASDQGMI-GDSIML----------GAFIDEQGFVHVTDR 73

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +     + L++D   R   S  HSA HLL +         V   GS + P+  R     
Sbjct: 74  AIAVG-PVKLSVDPTIRHLHSRYHSAGHLLAYVGEKY--GLVGIKGSHL-PNQARVVFQP 129

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           +        + I+ ++  +I  NLP   +I    +A     +                  
Sbjct: 130 TTSAIEVTKEQIQADLEKLILDNLPRKQKI----EAKTRFVS------------------ 167

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              G    + CGGTHV ST +I  + I      + G
Sbjct: 168 --WGDFPYSACGGTHVLSTQDIGKVNITK-IKHKKG 200


>gi|238753686|ref|ZP_04615048.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
 gi|238708238|gb|EEQ00594.1| Threonyl-tRNA synthetase [Yersinia ruckeri ATCC 29473]
          Length = 642

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 16/173 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPNTKMAIGPTID-NGFYYDVDLEQTLTQEDLDLLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G +Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEEYKVAILDENISRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            +        +   S       S    ++RI   T    +  L    ++L+  
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWADKKQLNAYLQRLEEA 239


>gi|229846781|ref|ZP_04466888.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
 gi|229810270|gb|EEP45989.1| threonyl-tRNA synthetase [Haemophilus influenzae 7P49H1]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|15924673|ref|NP_372207.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927261|ref|NP_374794.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315]
 gi|156980000|ref|YP_001442259.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3]
 gi|255006467|ref|ZP_05145068.2| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|54039693|sp|P67585|SYT_STAAN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042050|sp|P67584|SYT_STAAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225504|sp|A7X3A6|SYT_STAA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13701479|dbj|BAB42773.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247455|dbj|BAB57845.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722135|dbj|BAF78552.1| threonyl-tRNA synthetase 1 [Staphylococcus aureus subsp. aureus
           Mu3]
          Length = 645

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIGIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++A    +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEAKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|145629552|ref|ZP_01785350.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|145632888|ref|ZP_01788621.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145639038|ref|ZP_01794646.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145641382|ref|ZP_01796961.1| threonyl-tRNA synthetase [Haemophilus influenzae R3021]
 gi|144978395|gb|EDJ88159.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.1-21]
 gi|144986544|gb|EDJ93110.1| threonyl-tRNA synthetase [Haemophilus influenzae 3655]
 gi|145272010|gb|EDK11919.1| threonyl-tRNA synthetase [Haemophilus influenzae PittII]
 gi|145273925|gb|EDK13792.1| threonyl-tRNA synthetase [Haemophilus influenzae 22.4-21]
 gi|309750996|gb|ADO80980.1| Threonyl-tRNA synthetase [Haemophilus influenzae R2866]
          Length = 643

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|295706837|ref|YP_003599912.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
 gi|294804496|gb|ADF41562.1| threonyl-tRNA synthetase [Bacillus megaterium DSM 319]
          Length = 645

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 17/207 (8%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y   G    D   +I  G++ +    +   E + +   I E G L      ++T D    
Sbjct: 17  YP-KGSSTEDIAASISPGLKKKALAGRVNGELLDLRTPIEEDGSLE-----IITQDAPEA 70

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNV 639
            ++   HS  HL+  A+  +      Q G   +  +G  +D+   + IT  +L  IE  +
Sbjct: 71  LEIMR-HSTAHLMAQAIKRLYKDTKVQLGVGPVIENGFYYDIDMEESITPEDLGKIEKEM 129

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
             I+  N+ +  + ++RE+AI       +G +    +       E   ++       LC 
Sbjct: 130 KKIVNSNIEIERKEVSREEAIQLF--KEVGDELKLELIDAIPAGEKVTIYQQGEFFDLCR 187

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G HV STG+I    ++S   +     R
Sbjct: 188 GVHVPSTGKIKEFKLLS---VAGAYWR 211


>gi|294790871|ref|ZP_06756029.1| threonine--tRNA ligase [Scardovia inopinata F0304]
 gi|294458768|gb|EFG27121.1| threonine--tRNA ligase [Scardovia inopinata F0304]
          Length = 685

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 74/211 (35%), Gaps = 32/211 (15%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L+    +  + I+ ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 50  PLKAGDFVESIDINSKDGLAIMR-HSATHVMAQAVQEIYPQAKLGIGPVI-EDGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             KP T  ++K IE  +  II  +     RI+  + A    A      +  D       +
Sbjct: 108 VDKPFTPEDMKEIEKRMQRIIKSSQSFRRRIVTEDQARQEEADQPYKLELIDSAEEAIDQ 167

Query: 683 YED-----------------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
            +D                 G V  + LC G H+ +T  I    +   +   A  R    
Sbjct: 168 GKDTEVSQGQLTMYDNCDREGTVVWTDLCHGPHLPNTRYIKAFKLQRTAG--AYWRGSEK 225

Query: 722 -----RIEAITGQRARSHLMGQDEKLKSLAS 747
                RI   T   ++  L    ++L+  A 
Sbjct: 226 NPMLQRIYG-TAWASKEDLKAYLQRLEEAAK 255


>gi|162147243|ref|YP_001601704.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544293|ref|YP_002276522.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|189083610|sp|A9HFP5|SYT_GLUDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161785820|emb|CAP55391.1| Threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531970|gb|ACI51907.1| threonyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 641

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 11/144 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  +IE  + +I+
Sbjct: 70  MIRHDTAHVLAEAVQSLWPGTQVTIGPSI-ENGFYYDFYRNEPFTPEDFPAIEARMREIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           A N      +  R++AI        G ++   +     E E   ++       LC G H+
Sbjct: 129 AANARFEREVWPRDEAIRFFENR--GERFKAELIRDLPESEPISIYRQGEWLDLCRGPHL 186

Query: 700 SSTGEIM-LLYIVSESSIRAGIRR 722
             T ++     ++    +     R
Sbjct: 187 RGTADVGSAFKLMK---VAGAYWR 207


>gi|283783304|ref|YP_003374058.1| threonine--tRNA ligase [Gardnerella vaginalis 409-05]
 gi|283441631|gb|ADB14097.1| threonine--tRNA ligase [Gardnerella vaginalis 409-05]
          Length = 676

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 565 LRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L    ++  + +D ++   +   HSATH++  A+  I        G  I  DG  +D   
Sbjct: 49  LHDGDTVESVALDSEDGIAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFDV 106

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN--DRV 676
             P T  +LK IE ++  II ++     R++  ++A            L+G K    D  
Sbjct: 107 DTPFTPDDLKQIEKHMQHIIKESQSFRRRVVTEDEAREEEANQPYKLELIGDKEAALDPA 166

Query: 677 RVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +   +  ++           S LC G H+ +T  I    +     + A   R
Sbjct: 167 ASGEISKHELSMYDNVDREGNKVWSDLCRGPHLPNTRYIKAFKL---ERVAAAYWR 219


>gi|39936469|ref|NP_948745.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|73919820|sp|Q6N4D3|SYT_RHOPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39650325|emb|CAE28847.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 658

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 573 LTID----YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            +ID       R    I H   H+L  A+ ++        G  I  +G  +D   ++P T
Sbjct: 57  ASIDFVARDDARALELIRHDCAHVLAEAVQSLWPGTQVTIGPTI-ENGFYYDFFRNEPFT 115

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +  +IE  + +IIA++ P    +  R++A    A    G  +   +     E +   +
Sbjct: 116 PEDFAAIEKKMREIIARDKPFTKEVWTRDEAKKVFADN--GEAFKVELVDAIPEDQTIKI 173

Query: 689 HSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           +       LC G H++STG+I     ++    +     R
Sbjct: 174 YKQGEWFDLCRGPHMTSTGKIGTAFKLMK---VAGAYWR 209


>gi|224476774|ref|YP_002634380.1| threonyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254783537|sp|B9DNC9|SYT_STACT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222421381|emb|CAL28195.1| threonyl-tRNA synthetase 1 [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 647

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    +     L  + S+ +     +     + HS  HL+  AL  + G    
Sbjct: 35  KKAVAGKFNDKMVDLTRPLEEDGSIEIVTPGSDEALEVLRHSTAHLMAQALKRLYGDVKF 94

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I   G  +D      I+S +   IE  +  I+ +N  +  ++++RE+A       
Sbjct: 95  GVGPVID-GGFYYDFDTDVKISSDDFPEIEKTMKQIVNENYKIERKVVSREEAKEFF--- 150

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
                Y   +     E E   ++S      LC G HV ST +I    ++S + 
Sbjct: 151 -KDDPYKLELIDAIPEDESVTLYSQGEFTDLCRGVHVPSTSKIKEFKLLSTAG 202


>gi|310827810|ref|YP_003960167.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
 gi|308739544|gb|ADO37204.1| threonyl-tRNA synthetase [Eubacterium limosum KIST612]
          Length = 637

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  HSA+HL+  A+  +        G  I  +G  +D+     +T  +L+ IE  +  I
Sbjct: 68  HAFWHSASHLMAQAIKRLWPEAQLTIGPAID-NGFYYDIDLEHTLTPEDLEKIEKEMKKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTH 698
           + +   +     +REDA+    A   G  Y   +     E      +     + LC G H
Sbjct: 127 VKEAPEIEYYTKSREDALKWAEA--EGETYKTELINNLPEDAVISFYGQGEWADLCAGPH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + +  +I    ++S             + G  A  H    ++ L+ +       +  +  
Sbjct: 185 IRNASQIKAFKLLS-------------LAG--AYWHGDANNKMLQRVYGIAFPKKSELDE 229

Query: 759 RVEEIWEEYRKLQLIHAKR 777
            ++ + E  ++      K 
Sbjct: 230 YLQRLEEAKKRDHRKLGKE 248


>gi|269468339|gb|EEZ80013.1| threonyl-tRNA synthetase [uncultured SUP05 cluster bacterium]
          Length = 630

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           ++  + S+ +           I HS  HLL  A   +        G  I  +G  +D  +
Sbjct: 50  MIEADASVSIITAKDEEGLEVIRHSTAHLLAQATQMLYPDAQVTIGPVID-NGFFYDFAY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               +  +L  IE N+N ++ QNL +    M R++A+        G  Y   +       
Sbjct: 109 KDGFSEGDLAKIEKNMNHLVKQNLKIERSEMGRDEAVQFFKDK--GEYYKAEIIESIPAD 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
           +   ++       LC G HV ST ++    ++  + 
Sbjct: 167 QTLSLYQQGDFIDLCRGPHVPSTAKLKAFKLMKLAG 202


>gi|57239615|ref|YP_180751.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58579605|ref|YP_197817.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|73919788|sp|Q5H9Z4|SYT_EHRRW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57161694|emb|CAH58624.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
 gi|58418231|emb|CAI27435.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden]
          Length = 633

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           V+T+D      +   H   H++  A+  +     +  G  I  DG  +D +     +S E
Sbjct: 59  VITLDSDEGLDIIR-HDTAHIMAQAIKEMFPEVKTVVGPTI-KDGFYYDFSTDHIFSSNE 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE+ + +II +N   +  +  RE+AI     +  G  Y  ++      +E+  V+  
Sbjct: 117 LEKIEEKMREIIKKNESFIREVWTREEAIRFF--SNKGEDYKVKIIAKIPIHENITVYKQ 174

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS 715
                LC G H  ST       +   S 
Sbjct: 175 GSFIDLCRGPHAPSTKISKAFKLTKVSG 202


>gi|291327048|ref|ZP_06126787.2| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
 gi|291311980|gb|EFE52433.1| threonine--tRNA ligase [Providencia rettgeri DSM 1131]
          Length = 653

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  +L+ +E  + ++  
Sbjct: 82  IRHSCAHLLGHAIKQLWPNTKMAIGPTID-NGFYYDVDLDHMLTQEDLEKLEKRMLELAK 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  VV + ++  +A  +  A   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 141 TDYDVVKKRVSWSEARETFVAR--GEDYKVEILDQNISQDDRPGLYHHEEYVDMCRGPHV 198

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     +     R  +      R +     +K K LA++L
Sbjct: 199 PNMRFCHHFKL---QKVAGAYWRGNSDNKMLQRIYGTAWADK-KQLAAYL 244


>gi|124025364|ref|YP_001014480.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|166225477|sp|A2C155|SYT_PROM1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123960432|gb|ABM75215.1| Threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 640

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 77/218 (35%), Gaps = 22/218 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +     N     I HS  HLL HA+  +        G  I  DG  +D+++
Sbjct: 50  PITNDAEIQIITSKDNEGLEIIRHSFAHLLGHAVKQLYPEAKMAIGPVI-EDGFYYDISY 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L+ IE  + ++I ++  V   +++   A A+   +  G  +   +     + 
Sbjct: 109 KDTFTPVDLEKIEKRIKELINKDYDVDVEVVSP--AKATQVFSERGEVFKLDIIKNIPKD 166

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E   ++       +C G HV +T  +    ++  S                A       +
Sbjct: 167 EIIKLYKHEEYIDMCRGPHVPNTRHLRAFKLMKVSG---------------AYWRGDSNN 211

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +      +   +   +  I E  ++      K+
Sbjct: 212 EMLQRIYGTAWKNSKELKEYINRIEEAEKRDHRKLGKK 249


>gi|307298932|ref|ZP_07578734.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915357|gb|EFN45742.1| threonyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 648

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 13/162 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ--NGSCITPDGLRFDV 621
            +  + S+ L +D          H+ +H+L  A+  + G    +   G  I  +G  +D+
Sbjct: 51  PIEKDASVKLVLDKDPESSRFFRHTMSHILAQAIMRLYGKEKVKLAIGPTI-ENGFYYDI 109

Query: 622 THSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYN 673
              +  IT  +L  IE  ++ II ++LPV    +   +AI             L+     
Sbjct: 110 DLGETRITEEDLPKIESEMSKIIKEDLPVERFELPVSEAIELMKREDQPYKVQLIEDLVK 169

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           D        Y+ G      LC G HVSSTG++    + S S 
Sbjct: 170 DTGAEKVTFYKQGEF--VDLCRGPHVSSTGKVKYFKLTSVSG 209


>gi|295096109|emb|CBK85199.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 622

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  ++ ++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDLDHTLTQEDIDALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            N  V+ + ++  +A  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 TNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGLYHHQEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKIAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|220905829|ref|YP_002481140.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
 gi|219862440|gb|ACL42779.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 7425]
          Length = 610

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G  I  +G  +D  +  P T  +LK+I+  +  II 
Sbjct: 31  IRHTASHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDNPDPFTEKDLKAIQKEMVKIIK 89

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVS 700
           + LPV+   ++RE+A        +   Y   +        +     G     LC G H+ 
Sbjct: 90  RKLPVIREEISREEAERR--IKAINEPYKLEILADIQSEPITIYHLGDQWWDLCAGPHLE 147

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TGE+    I +  S+     R
Sbjct: 148 NTGELHPDAI-ALESVAGAYWR 168


>gi|58617659|ref|YP_196858.1| threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
 gi|73919787|sp|Q5FGP1|SYT_EHRRG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|58417271|emb|CAI28384.1| Threonyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel]
          Length = 633

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           V+T+D      +   H   H++  A+  +     +  G  I  DG  +D +     +S E
Sbjct: 59  VITLDSDEGLDIIR-HDTAHIMAQAIKEMFPEVKTVVGPTI-KDGFYYDFSTDHIFSSNE 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE+ + +II +N   +  +  RE+AI     +  G  Y  ++      +E+  V+  
Sbjct: 117 LEKIEEKMREIIKKNESFIREVWTREEAIRFF--SNKGEDYKVKIIAKIPIHENITVYKQ 174

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS 715
                LC G H  ST       +   S 
Sbjct: 175 GSFIDLCRGPHAPSTKISKAFKLTKVSG 202


>gi|313896316|ref|ZP_07829869.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975115|gb|EFR40577.1| threonine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 639

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 582 QLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +L++ H+ +H++  A+  +    HV         +G  +D      +T A+L+ IE  + 
Sbjct: 68  RLALRHTCSHIMAQAVKRLYKDAHVQLAIGPAIENGFYYDFDMEHRLTDADLRDIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ +NL +  R + R +AIA       G  Y   +     E      ++      LC G
Sbjct: 128 KIVKENLKLERREIPRSEAIAYF--REKGENYKVELIEDLPEDVTISTYTQGEFTDLCAG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV        +  +   SI     R
Sbjct: 186 PHV---LSTGKVKALRLQSIAGAYWR 208


>gi|229825871|ref|ZP_04451940.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
 gi|229789891|gb|EEP26005.1| hypothetical protein GCWU000182_01235 [Abiotrophia defectiva ATCC
           49176]
          Length = 604

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 74/188 (39%), Gaps = 12/188 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H+L  A+  I G  V         DG  +D    + +T  + K IED + +I+ 
Sbjct: 10  YRHSLAHVLAKAVFEIFGESVQIAIGPQIDDGFYYDFVLPRAVTEDDYKVIEDKMREILK 69

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +      + + +E+A+             ND      +   + G     LC G H+ ++ 
Sbjct: 70  RKENWTRKELTKEEALEKFKDQKFKVEIINDLPEDAIISTYNTGDDFCDLCRGPHIENSA 129

Query: 704 EIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           E++ +    +S+  A  R  E     QR   +     ++LK+  + ++          E 
Sbjct: 130 ELLNVAFQVKSASGAYWRGDEKRDRLQRIYVYAFPTKDELKAHLNLIR----------EA 179

Query: 763 IWEEYRKL 770
           +  +++KL
Sbjct: 180 LERDHKKL 187


>gi|310821380|ref|YP_003953738.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309394452|gb|ADO71911.1| Threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 642

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL+  A+  +        G   T +G  +D    KP T  +L+ IE   N  IA
Sbjct: 75  IRHDAAHLVASAVQRLFPGTQVTIGPA-TEEGFYYDFFREKPFTPEDLEKIEAEANAEIA 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG----------VHSSALC 694
           +NLP V + ++ E+A+      L   K  ++ +V  ++                     C
Sbjct: 134 RNLPFVRKEVSMEEAV-----RLFEEK-GEKFKVEIIQDIAAKGAKTLTLYSHGDWVDFC 187

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G H  STG + ++ I+S S 
Sbjct: 188 LGPHGPSTGRVGVIKILSSSG 208


>gi|260911675|ref|ZP_05918255.1| alpha-amylase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634223|gb|EEX52333.1| alpha-amylase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 716

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A HLL+  +  +     S N + +     +   T  +  +  + K IE  +N++I ++
Sbjct: 580 HTAEHLLNQVMIRMFDCGRSTN-AHVERKKSKISYTLDRKPSRQDEKEIERRMNELIEED 638

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           LPV   +++R D         +   Y++ VR+V +     G   +  C G HV STG+I 
Sbjct: 639 LPVTYELVDRYDLPEGIDLDRVPDDYSNVVRIVRI-----GDFDTCSCIGKHVRSTGQIG 693

Query: 707 LLYIVS 712
              ++ 
Sbjct: 694 KFVMLG 699


>gi|307244344|ref|ZP_07526458.1| threonine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492310|gb|EFM64349.1| threonine--tRNA ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 664

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H++ H+   A+  +        G  I  +G  +D      +   +L+ IE  +  I+ 
Sbjct: 94  FRHTSAHIFAQAVKRLWPQAKLAIGPAI-ENGFYYDFDLDYRLVPEDLEKIEAEMKKIVK 152

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++L +    +++E+AI     A +G  Y   +     + E   ++       LC G H+ 
Sbjct: 153 EDLRIEGFEVSKEEAIKM--MAEIGEDYKVEMINDLPDGEIISMYRQGEFVDLCRGPHLE 210

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST +I    +    SI     R
Sbjct: 211 STKKIKAFKL---QSIAGAYWR 229


>gi|260596459|ref|YP_003209030.1| hypothetical protein CTU_06670 [Cronobacter turicensis z3032]
 gi|260215636|emb|CBA27917.1| hypothetical protein CTU_06670 [Cronobacter turicensis z3032]
          Length = 210

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 38/217 (17%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           E+   G   EV  D T F+ + GGQ  D+G   G      +  V+ + + +    A    
Sbjct: 22  EQNAQGD-YEVELDTTLFHPQGGGQPSDSGTING----APVLRVENRGDTVIHLLA---- 72

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
             + T     L +D   R++ +  HSA HL+ +A   +    V    +   P   +    
Sbjct: 73  QPVATG-PATLVVDEALRKRHTRWHSAGHLIGYAGEQLGWQPV---KAHHWPGEGKITFA 128

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            ++   + +  ++ + +   IA +LP     ++    +  G   + G             
Sbjct: 129 PAQASDAPDADALSEKIAAWIAADLPRYVGFIDGRRQVRFGELPVYG------------- 175

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                      CGGTHV+S  ++  + + S   ++ G
Sbjct: 176 -----------CGGTHVASLSQVGEVTLTS-IKVKKG 200


>gi|114566616|ref|YP_753770.1| threonyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|122318333|sp|Q0AY05|SYT_SYNWW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114337551|gb|ABI68399.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 635

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 7/143 (4%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R +    HS+ H++  A+  +        G  I   G  +D       T  +  +IE
Sbjct: 63  EDERAREVYRHSSAHVMAQAVKRLWPESKLAIGPAID-KGFYYDFDSGHTFTPEDFAAIE 121

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
           + +  II  + P+V + ++RE+A+   +       Y   +     E      +       
Sbjct: 122 EEMKRIIKADYPIVRKELSREEALQFFSER--SEDYKLELIEDLPEDAVISTYQQGEFVD 179

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G H+ STG +  + ++S + 
Sbjct: 180 LCAGPHLPSTGRLKAIKVMSLAG 202


>gi|294501489|ref|YP_003565189.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
 gi|294351426|gb|ADE71755.1| threonyl-tRNA synthetase [Bacillus megaterium QM B1551]
          Length = 645

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSA 630
           ++T D     ++   HS  HL+  A+  +      Q G   +  +G  +D+   + IT  
Sbjct: 62  IITQDAPEALEIMR-HSTAHLMAQAIKRLYKDTKVQLGVGPVIENGFYYDIDMEESITPE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L  IE  +  I+  N+ +  + ++RE+AI       +G +    +       E   ++ 
Sbjct: 121 DLGKIEKEMKKIVNSNIEIERKEVSREEAIQLF--KEVGDELKLELIDAIPAGEKVTIYQ 178

Query: 691 S----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                 LC G HV STG+I    ++S   +     R
Sbjct: 179 QGEFFDLCRGVHVPSTGKIKEFKLLS---VAGAYWR 211


>gi|260754807|ref|ZP_05867155.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|260758029|ref|ZP_05870377.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260761852|ref|ZP_05874195.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|297248387|ref|ZP_06932105.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
 gi|260668347|gb|EEX55287.1| threonine-tRNA ligase [Brucella abortus bv. 4 str. 292]
 gi|260672284|gb|EEX59105.1| threonine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674915|gb|EEX61736.1| threonine-tRNA ligase [Brucella abortus bv. 6 str. 870]
 gi|297175556|gb|EFH34903.1| threonyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196]
          Length = 660

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 13/175 (7%)

Query: 558 AIVERGILRTEMSLVLTID--YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             V         S  L I      R    I H   H+L  A+  +        G  I  +
Sbjct: 47  GTVRDLSDPLGASGKLEIITREDPRALELIRHDTAHVLAEAVQELFPGTQVTIGPVI-EN 105

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +    G  Y   
Sbjct: 106 GFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK--GESYKVE 163

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +       +D  ++       LC G H++STG+I     ++    +     R +A
Sbjct: 164 LVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYWRGDA 215


>gi|228908133|ref|ZP_04071981.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228851551|gb|EEM96357.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
          Length = 640

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         RG +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRGNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEIDDSLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|330994118|ref|ZP_08318046.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
 gi|329758585|gb|EGG75101.1| Threonyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1]
          Length = 644

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H A H+L  A+ ++        G  I  +G  +D   ++P +  +  +IE  + +I+
Sbjct: 70  MIRHDAAHVLAEAVQSLFPGTQVTIGPSI-ENGFYYDFYRNEPFSPEDFAAIEKRMAEIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           A N P V     RE AI        G ++   +     E E+  ++       LC G H+
Sbjct: 129 AANEPFVREAWPREKAIEFFEDR--GERFKAELIRDLPEDEEISIYRQGEWLDLCRGPHL 186

Query: 700 SSTGEIM-LLYIVSESSIRAGIRR 722
             T ++     ++    +     R
Sbjct: 187 RGTADVGTAFKLMK---VAGAYWR 207


>gi|297153602|gb|ADI03314.1| predicted metal-dependent hydrolase [Streptomyces bingchenggensis
           BCW-1]
          Length = 230

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 77/221 (34%), Gaps = 38/221 (17%)

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT---EMSLVLTID 576
           F+ + GGQ  D G        +++  V+ +  G+ V                  +   ID
Sbjct: 38  FHPQGGGQPADRGWLE----EVEVVPVRDEQSGLIVAVPAAAEAGWPVFAEGQPVRARID 93

Query: 577 YQNRRQLSINHSATHLLHHALS----TILGSHVSQNGSCITPDGLRFDVTHSKPITSAE- 631
              R   +  H+A HL+  A       + G++     + I     + D   ++P    E 
Sbjct: 94  LGARMAHAALHTAGHLVEAAGRAQGCELAGNNHFPGQARIEFTAPQHDPRAAEPEGREEV 153

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  +   V   IA++LPV   +         G   +                   G   S
Sbjct: 154 LTELRKTVAAAIAEDLPVTAAV------DEQGLRMV-----------------SLGALHS 190

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT--GQR 730
           A CGGTHV   G++  + + S   ++ G  R+      G+R
Sbjct: 191 APCGGTHVRGLGDLHDVVLPSL-KVKRGRIRVSYSAAHGER 230


>gi|62289987|ref|YP_221780.1| threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82699915|ref|YP_414489.1| threonyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308]
 gi|189024229|ref|YP_001934997.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|254689295|ref|ZP_05152549.1| threonyl-tRNA synthetase [Brucella abortus bv. 6 str. 870]
 gi|254697431|ref|ZP_05159259.1| threonyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730329|ref|ZP_05188907.1| threonyl-tRNA synthetase [Brucella abortus bv. 4 str. 292]
 gi|256257545|ref|ZP_05463081.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|260545263|ref|ZP_05821004.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260883825|ref|ZP_05895439.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
 gi|73919775|sp|Q57D65|SYT_BRUAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123740930|sp|Q2YQ07|SYT_BRUA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689368|sp|B2S5S6|SYT_BRUA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62196119|gb|AAX74419.1| ThrS, threonyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941]
 gi|82616016|emb|CAJ11049.1| tRNA synthetases, class-II (G, H, P and S):Prolyl-tRNA synthetase,
           class IIa:Threonyl-tRNA synthetase, class IIa:TGS
           domain:A [Brucella melitensis biovar Abortus 2308]
 gi|189019801|gb|ACD72523.1| threonyl-tRNA synthetase [Brucella abortus S19]
 gi|260096670|gb|EEW80545.1| threonyl-tRNA synthetase [Brucella abortus NCTC 8038]
 gi|260873353|gb|EEX80422.1| threonyl-tRNA synthetase [Brucella abortus bv. 9 str. C68]
          Length = 658

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 13/175 (7%)

Query: 558 AIVERGILRTEMSLVLTID--YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             V         S  L I      R    I H   H+L  A+  +        G  I  +
Sbjct: 45  GTVRDLSDPLGASGKLEIITREDPRALELIRHDTAHVLAEAVQELFPGTQVTIGPVI-EN 103

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D   ++P T  +L  IE  + +II +N P    + +RE A    +    G  Y   
Sbjct: 104 GFYYDFARNEPFTLDDLPVIEKKMREIIQRNKPFTKEVWSREKAKQVFSDK--GESYKVE 161

Query: 676 VRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           +       +D  ++       LC G H++STG+I     ++    +     R +A
Sbjct: 162 LVDAIPAGQDLKIYYQGDWFDLCRGPHMASTGQIGNSFKLMK---VAGAYWRGDA 213


>gi|325263795|ref|ZP_08130528.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324030833|gb|EGB92115.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 641

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H++  A+  +        G  ++ DG  +D+    P+T  +L+ IE  +  I+
Sbjct: 69  AFWHTASHIMAQAVKRLYPDTRLAIGPSVS-DGFYYDIDRETPLTVEDLEKIEAEMKKIV 127

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHV 699
            + LP+      R++AIA       G  Y   +     +      +S A    LC G H+
Sbjct: 128 KEALPIEQYTKPRQEAIAYFEEK--GEPYKVELIEDLPDDAVISFYSQAEFTDLCAGPHL 185

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +    + S + 
Sbjct: 186 MTTKPVKAFKLTSLAG 201


>gi|169828188|ref|YP_001698346.1| threonyl-tRNA synthetase [Lysinibacillus sphaericus C3-41]
 gi|168992676|gb|ACA40216.1| Threonyl-tRNA synthetase 2 [Lysinibacillus sphaericus C3-41]
          Length = 637

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 12/201 (5%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           + +   Q    G  + +  +    +++KKA    V+  IV+      E + +   D  ++
Sbjct: 10  FPDGQQQAFTKGVTLTEIAQAIRPELRKKAVAGSVNGTIVDLTRPIMEDAQITLYDASSK 69

Query: 581 RQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             +  I HS  HLL  A+  +   H       +  +G  +D+  +  +T ++L+ IE  +
Sbjct: 70  EGIEVIRHSTAHLLAQAVKRLYP-HARFGVGPVIENGFYYDIDIADTLTPSDLQQIEKTM 128

Query: 640 NDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
             I+ +N+ +  R ++R +A    A       LL +   D    +   YE G  +   LC
Sbjct: 129 KQIVRENVQIKRREVSRNEAKKLFAHDALKLELLESIPADETVTI---YEQGEFYD--LC 183

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G+HV STG++    ++  S 
Sbjct: 184 RGSHVPSTGKLQHFQLMHVSG 204


>gi|91226476|ref|ZP_01261225.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
 gi|91189108|gb|EAS75389.1| threonyl-tRNA synthetase [Vibrio alginolyticus 12G01]
          Length = 410

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 190 NMSFCQHFTLL---NVAGAYWR 208


>gi|297623866|ref|YP_003705300.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
 gi|297165046|gb|ADI14757.1| threonyl-tRNA synthetase [Truepera radiovictrix DSM 17093]
          Length = 665

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 95/297 (31%), Gaps = 76/297 (25%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           A  GGQL D    + DG  + I    KK E +                            
Sbjct: 37  ATVGGQLTDLLSELPDGAEVAIL--TKKDEAVV--------------------------- 67

Query: 582 QLSINHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +L   H+  H++  A+  +          +      +  +G  +D    + +T  +L+ I
Sbjct: 68  RLMR-HTLAHVMAQAVRDLFVAEGYAPERIKMGVGPVIDNGFYYDFDLPRTLTPDDLERI 126

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVH 689
           E  + +II   LP+    + R +A+A          Y   +     E      YE GG  
Sbjct: 127 EARMREIIRAKLPLRRFALPRAEALARFEGR---DPYKLELIQNLPEDVPITFYEQGGAD 183

Query: 690 -SSALCGGTHVSSTGEI-MLLYIVSESSIRAGIRR-------------IEAITGQRARSH 734
             + LC G HV +TG++     ++S   +     R             +   T +    H
Sbjct: 184 GFTDLCRGPHVPNTGDLPQHFKLMS---VAGAYWRGDETRPMLQRVYGVAFRTKEELEDH 240

Query: 735 LMGQDEKLKSLASFLKVS------QGNV-------VGRVEEIWEEYRKLQLIHAKRK 778
           L   +E  K     L           ++       + R   I EE  KL     +R 
Sbjct: 241 LWRLEEAKKRDHRKLGAELEIFTLDDDIGPGLPLWLPRGAVIVEEIEKLAKEMERRA 297


>gi|319898981|ref|YP_004159074.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
 gi|319402945|emb|CBI76496.1| Threonyl-tRNA synthetase [Bartonella clarridgeiae 73]
          Length = 658

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE  +
Sbjct: 69  RALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFARKQPFTLDDLTIIEKKM 127

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II +N P    I +RE A      +     Y   +     + +D  V+       LC 
Sbjct: 128 REIIQRNKPFRKEIWSREKAKKIF--SEKNELYKIELIDAIPDDQDLKVYYQGDWFDLCR 185

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           G H+ STG+I     ++    +     R +A
Sbjct: 186 GPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|308175974|ref|YP_003915380.1| hypothetical protein AARI_01730 [Arthrobacter arilaitensis Re117]
 gi|307743437|emb|CBT74409.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
          Length = 227

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 43/231 (18%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           ++    S     +      F+   GGQ  D+G    DG  + +   Q+   G+ V +   
Sbjct: 25  VIATGSSEDGQWIALSPNIFHPRGGGQPEDSGTV--DGQPVAV---QRDEAGLVVLYGAD 79

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
            +        +   ID   R   +  H+A H+L  A       H    G    P   R D
Sbjct: 80  TK---AVGEEVTAEIDAALRLSHAALHTAGHVLGFAGEDRGWQH---KGHSHFPGQSRLD 133

Query: 621 VTHSK---PITSAELKS-----IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              +    P+     ++     I+  VN++IA    + T     E  I            
Sbjct: 134 FDPASVDLPLGDEHERAAAREWIQARVNELIAGGGEIAT--TTDEQGI------------ 179

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
               R VS+   +        CGGTHV    ++  + I  E+ ++ G+ ++
Sbjct: 180 ----RTVSIAGVNA-----EPCGGTHVKHPNQLRQVEI-GEAKVKRGVYKV 220


>gi|56707928|ref|YP_169824.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670399|ref|YP_666956.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457008|ref|ZP_03665481.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370416|ref|ZP_04986421.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874733|ref|ZP_05247443.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|73919791|sp|Q5NGL8|SYT_FRATT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123063497|sp|Q14I20|SYT_FRAT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56604420|emb|CAG45450.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320732|emb|CAL08833.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568659|gb|EDN34313.1| hypothetical protein FTBG_00181 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840732|gb|EET19168.1| threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159111|gb|ADA78502.1| Threonyl-tRNA synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 634

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  +  +G  +D +  + I  A+L +IE  + ++  
Sbjct: 71  LRHSCAHLLAHAVKELYPNTEVTIGPVVD-NGFYYDFSFKESIGEADLPTIEKKMKELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ P+  R++ + +AI    A   G  Y     + S+  E   +++      LC G H+ 
Sbjct: 130 KSAPISYRVVPKAEAIEFFKAQ--GENYKVE-IIDSIADEQMKIYTQDNFSDLCRGPHIP 186

Query: 701 STGEIMLLYIVS-----ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  +    +                + RI        +  L      L+    
Sbjct: 187 NTSVLKAFKLTKLAGAYWRGNSDNEMLTRIYGTC-WATKEDLEQYLNMLEEAEK 239


>gi|326404590|ref|YP_004284672.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
 gi|325051452|dbj|BAJ81790.1| threonyl-tRNA synthetase [Acidiphilium multivorum AIU301]
          Length = 640

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I   G  +D   ++P T  +L +IE  + +IIA
Sbjct: 71  IRHDAAHVMAEAVQALYPGTQVTIGPAI-EGGFYYDFFRNEPFTPDDLPAIEAKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N P    + +R++AI    A   G ++   +       E   ++       LC G H+ 
Sbjct: 130 ANAPFTREVWDRDEAIRFFEAR--GERFKAELIRDLPASETITIYRQGDWLDLCRGPHMR 187

Query: 701 STGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            TG+I     +     +     R +      +R +     ++ K L + LK
Sbjct: 188 GTGDIGGAFKLTK---VAGAYWRGDHRNPMLSRIYGTAWRDQ-KELDAHLK 234


>gi|115375454|ref|ZP_01462714.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|115367497|gb|EAU66472.1| threonyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL+  A+  +        G   T +G  +D    KP T  +L+ IE   N  IA
Sbjct: 49  IRHDAAHLVASAVQRLFPGTQVTIGPA-TEEGFYYDFFREKPFTPEDLEKIEAEANAEIA 107

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG----------VHSSALC 694
           +NLP V + ++ E+A+      L   K  ++ +V  ++                     C
Sbjct: 108 RNLPFVRKEVSMEEAV-----RLFEEK-GEKFKVEIIQDIAAKGAKTLTLYSHGDWVDFC 161

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G H  STG + ++ I+S S 
Sbjct: 162 LGPHGPSTGRVGVIKILSSSG 182


>gi|295687966|ref|YP_003591659.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
 gi|295429869|gb|ADG09041.1| threonyl-tRNA synthetase [Caulobacter segnis ATCC 21756]
          Length = 658

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 21/197 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H   H+L  A+  +        G  +  DG  +D    +P +  +L+ IE  + +I+
Sbjct: 75  TIRHDTAHVLAEAVQELFPGTQVTIGPNV-EDGFYYDFARDEPFSLDDLEKIEKRMKEIV 133

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++  +   + +RE+AI       +G +Y  ++       +   V+       LC G H+
Sbjct: 134 DRDEKISREVWDREEAIKHFDD--IGEQYKAQIIRDLPPTDTITVYRQGNWKDLCRGPHL 191

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +        + +     R                + +L+ +      S+ ++   
Sbjct: 192 PSTKHVG--KAFKLTKLAGAYWR------------GDQNNAQLQRIYGTAWASEADLDAY 237

Query: 760 VEEIWEEYRKLQLIHAK 776
           ++ I E  ++      K
Sbjct: 238 LKRIEEAEKRDHRKLGK 254


>gi|51473419|ref|YP_067176.1| threonyl-tRNA synthetase [Rickettsia typhi str. Wilmington]
 gi|73919822|sp|Q68XE8|SYT_RICTY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51459731|gb|AAU03694.1| Threonine translase [Rickettsia typhi str. Wilmington]
          Length = 635

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP +  +L +IE  + +++ 
Sbjct: 71  IRHDAAHLTAAAVKELFPETQVAIGPAI-ENGYYYDFARDKPFSRDDLATIEAKMQELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +   + +R+ AI    +  +G  Y  ++       E   ++       LC G H  
Sbjct: 130 KNEKITRELWDRDKAIEFFLS--IGEHYKAKIIASIPAGEQITLYRQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGFVKYFKLMK---VAGAYWR 206


>gi|316933337|ref|YP_004108319.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
 gi|315601051|gb|ADU43586.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris DX-1]
          Length = 693

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 11/150 (7%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             R    I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  +IE 
Sbjct: 95  DGRALELIRHDCAHVLAEAVQSLWPGTQVTIGPVI-ENGFYYDFFRNEPFTPEDFAAIEK 153

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----AL 693
            + +IIA++ P    +  R++A    A    G  +   +     E +   ++       L
Sbjct: 154 KMREIIARDKPFTKEVWTRDEAKKVFADN--GEAFKVELVAAIPEDQTIKIYKQGEWFDL 211

Query: 694 CGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           C G H++STG+I     ++    +     R
Sbjct: 212 CRGPHMTSTGKIGTAFKLMK---VAGAYWR 238


>gi|153855829|ref|ZP_01996815.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
 gi|149751870|gb|EDM61801.1| hypothetical protein DORLON_02836 [Dorea longicatena DSM 13814]
          Length = 645

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 13/197 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E    + D    I +G+    T  +   E + + H + E   L      +LT D +  + 
Sbjct: 17  EGSMSVLDITKDISEGLARVATSARVNGEVVDLRHVVSEDCELE-----ILTFDNEEGKG 71

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+ +H++  A+  +        G  I  +G  +DV    P  + +L+ IE  +  I
Sbjct: 72  -AFWHTTSHIMAQAIKRLYPDTKLAIGPSI-ENGFYYDVDRETPFVAEDLEKIEKEMKKI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           + + LP+      RE+AIA          Y   +     E E+   +       LC G H
Sbjct: 130 VKEALPIERFTKTREEAIAYF--KEKDEPYKVELIEDLPEGEEISFYQQGEFVDLCAGPH 187

Query: 699 VSSTGEIMLLYIVSESS 715
           + +T  +    + S + 
Sbjct: 188 LMTTKPVKAFKLTSLAG 204


>gi|148261186|ref|YP_001235313.1| threonyl-tRNA synthetase [Acidiphilium cryptum JF-5]
 gi|166223313|sp|A5G0L2|SYT_ACICJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146402867|gb|ABQ31394.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidiphilium
           cryptum JF-5]
          Length = 640

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 12/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I   G  +D   ++P T  +L +IE  + +IIA
Sbjct: 71  IRHDAAHVMAEAVQALYPGTQVTIGPAI-EGGFYYDFFRNEPFTPDDLPAIEAKMREIIA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N P    + +R++AI    A   G ++   +       E   ++       LC G H+ 
Sbjct: 130 ANAPFTREVWDRDEAIRFFEAR--GERFKAELIRDLPASETITIYRQGDWLDLCRGPHMR 187

Query: 701 STGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            TG+I     +     +     R +      +R +     ++ K L + LK
Sbjct: 188 GTGDIGGAFKLTK---VAGAYWRGDHRNPMLSRIYGTAWRDQ-KELDAHLK 234


>gi|196033851|ref|ZP_03101262.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228945992|ref|ZP_04108333.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|195993531|gb|EDX57488.1| threonyl-tRNA synthetase [Bacillus cereus W]
 gi|228813685|gb|EEM59965.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 639

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R I+     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDELYDLRRIIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ V    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKVERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|30022651|ref|NP_834282.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|29898209|gb|AAP11483.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
          Length = 646

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 59  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 117

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 118 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 171

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 172 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 214

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 215 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 258


>gi|296084987|emb|CBI28402.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D    +P+T
Sbjct: 93  EKIVLPTNESSERLLRIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLT 150

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDG 686
             +LK I+  ++ II +NLP++   ++R++A     A     K    D ++   +     
Sbjct: 151 DKDLKRIKKEMDRIIGRNLPLIREEVSRDEAQRRIMAVNEPYKMEILDSIQEDPITIYHI 210

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G     LC G HV  TG I     V   S+     R +       R +    + + + L 
Sbjct: 211 GGEWWDLCAGPHVEYTGNINR-KAVELESVAGAYWRGDEKKQMLQRIYGTAWENE-EQLK 268

Query: 747 SFLKVSQG 754
           ++L   + 
Sbjct: 269 AYLHFKEE 276


>gi|217962055|ref|YP_002340625.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|222098038|ref|YP_002532095.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|229141301|ref|ZP_04269839.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|217064460|gb|ACJ78710.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|221242096|gb|ACM14806.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|228642082|gb|EEK98375.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 645

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|160875442|ref|YP_001554758.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|189083621|sp|A9L2Q9|SYT_SHEB9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160860964|gb|ABX49498.1| threonyl-tRNA synthetase [Shewanella baltica OS195]
 gi|315267632|gb|ADT94485.1| threonyl-tRNA synthetase [Shewanella baltica OS678]
          Length = 642

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  ++ ++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDIDLEHKLTQDDIDALEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G  Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDAFAAR--GEDYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   I     R
Sbjct: 188 PNMRFCQHFKLMS---IAGAYWR 207


>gi|229163567|ref|ZP_04291517.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228619949|gb|EEK76825.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 646

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 59  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 117

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 118 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 171

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 172 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 214

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 215 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 258


>gi|42783753|ref|NP_981000.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206969938|ref|ZP_03230892.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218234238|ref|YP_002369371.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|228923319|ref|ZP_04086607.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228954844|ref|ZP_04116864.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228960844|ref|ZP_04122479.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229048283|ref|ZP_04193851.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229072077|ref|ZP_04205286.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|229081828|ref|ZP_04214320.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|229112040|ref|ZP_04241583.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|229129859|ref|ZP_04258825.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|229147134|ref|ZP_04275493.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|229152770|ref|ZP_04280953.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|229180894|ref|ZP_04308229.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|229192776|ref|ZP_04319734.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|229198724|ref|ZP_04325422.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|296505048|ref|YP_003666748.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|42739683|gb|AAS43608.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|206735626|gb|EDZ52794.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|218162195|gb|ACK62187.1| threonine--tRNA ligase [Bacillus cereus B4264]
 gi|228584746|gb|EEK42866.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228590615|gb|EEK48476.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228602451|gb|EEK59937.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228630590|gb|EEK87236.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228636383|gb|EEK92854.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228653550|gb|EEL09422.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|228671363|gb|EEL26664.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228701416|gb|EEL53910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228711011|gb|EEL62977.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228723008|gb|EEL74385.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|228798866|gb|EEM45845.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228804833|gb|EEM51432.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228836273|gb|EEM81626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|296326100|gb|ADH09028.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|324328469|gb|ADY23729.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 645

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|67459371|ref|YP_246995.1| threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
 gi|73919821|sp|Q4UKU3|SYT_RICFE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|67004904|gb|AAY61830.1| Threonyl-tRNA synthetase [Rickettsia felis URRWXCal2]
          Length = 635

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A   +        G  I  +G  +D    KP T  ++  IE  +++I+ 
Sbjct: 71  IRHDAAHIIAEAAKELFPDIQVTIGPAI-ENGFFYDFAKDKPFTPDDVAMIEARMHEIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 RNEQITRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGSFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGFVKHFKLMK---VAGAYWR 206


>gi|292670652|ref|ZP_06604078.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
 gi|292647679|gb|EFF65651.1| threonine-tRNA ligase [Selenomonas noxia ATCC 43541]
          Length = 639

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 582 QLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +L++ H+ +H++  A+  +     V         +G  +D      +T A+L+ IE  + 
Sbjct: 68  RLALRHTCSHIMAQAVKRLYPESRVQLAIGPAIENGFYYDFDMEHQLTDADLRDIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ +NL +  R + R++AI    A   G  Y   +           +++      LC G
Sbjct: 128 KIVKENLKLERREIPRDEAIEYFRAK--GENYKVELIRDLPADATISIYTQGEFIDLCAG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV S      +  +   S+     R
Sbjct: 186 PHVMS---TGKVKALKLQSVAGAYWR 208


>gi|289550561|ref|YP_003471465.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315658055|ref|ZP_07910928.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|289180093|gb|ADC87338.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|315496945|gb|EFU85267.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 645

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 1/169 (0%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     L  +  + +           + HS  HL+ +AL  + G +V 
Sbjct: 35  KKAVAGKFNQQLIDLARPLEEDGEIEIVTPGSEEALEVLRHSTAHLMANALKRLYG-NVQ 93

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                +   G  +D      I+S + + IE  +  I+ +N  +  ++++RE+A       
Sbjct: 94  FGVGPVIEGGFYYDFDMENKISSDDFEKIEKMMKQIVNENHKIERKVVSREEAKEFFKDD 153

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               +  D +    +         + LC G HV ST +I    ++S + 
Sbjct: 154 PYKLELIDAIPQDEMVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAG 202


>gi|225447618|ref|XP_002270988.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 670

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D    +P+T
Sbjct: 86  EKIVLPTNESSERLLRIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLT 143

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDG 686
             +LK I+  ++ II +NLP++   ++R++A     A     K    D ++   +     
Sbjct: 144 DKDLKRIKKEMDRIIGRNLPLIREEVSRDEAQRRIMAVNEPYKMEILDSIQEDPITIYHI 203

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G     LC G HV  TG I     V   S+     R +       R +    + + + L 
Sbjct: 204 GGEWWDLCAGPHVEYTGNINR-KAVELESVAGAYWRGDEKKQMLQRIYGTAWENE-EQLK 261

Query: 747 SFLKVSQG 754
           ++L   + 
Sbjct: 262 AYLHFKEE 269


>gi|242373974|ref|ZP_04819548.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
 gi|242348328|gb|EES39930.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis M23864:W1]
          Length = 654

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L  + S+ +           
Sbjct: 28  GTTTEDIAQSISPGLR------KKAVAGKFNGQMVDLTRPLEEDGSIEIVTPGSEEALEV 81

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G  V      +   G  +D    + ++S +   IE  +  I+ 
Sbjct: 82  LRHSTAHLMAQALKRLYGD-VKFGVGPVIEGGFYYDFDMDEKVSSDDFDKIEKTMKQIVN 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +  ++++R +A            Y   +     E E+  +++      LC G HV 
Sbjct: 141 ENYKIERKVVSRNEAKEFF----KDDPYKLELIDAIPEDENVTLYTQGEFTDLCRGVHVP 196

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 197 STSKIKEFKLLSTAG 211


>gi|225155152|ref|ZP_03723647.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
 gi|224804099|gb|EEG22327.1| threonyl-tRNA synthetase [Opitutaceae bacterium TAV2]
          Length = 646

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS++H+L  A+  +        G   T  G  +D+      T  +L  IE  +  +I
Sbjct: 8   EIRHSSSHILATAILRLFPEAKLDIGPP-TDSGFYYDIDLDHKFTLEDLARIEAEMKKVI 66

Query: 644 AQNLPVVTRIMNREDAI----ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            +N P       RE+A       G       +  D     ++ +   G     LC GTHV
Sbjct: 67  DENQPFRRFETTREEAERIIRERGQERYKLGRLADIPAGEAISFYQNGEFID-LCAGTHV 125

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T ++    ++S             I G  A      ++++L+ +      S+  +   
Sbjct: 126 RYTKQVKAFKLLS-------------IAG--AYHRGDEKNKQLQRIYGTAFASKDELAQF 170

Query: 760 VEEIWEEYR 768
           +E   E+ +
Sbjct: 171 LER-QEQAK 178


>gi|228987823|ref|ZP_04147932.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229158179|ref|ZP_04286246.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228625137|gb|EEK81897.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228771871|gb|EEM20328.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 645

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|163868456|ref|YP_001609665.1| threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
 gi|189083598|sp|A9IVB0|SYT_BART1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161018112|emb|CAK01670.1| Threonyl-tRNA synthetase [Bartonella tribocorum CIP 105476]
          Length = 658

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
            + +     +R    I H   H+L  A+  +        G  I  +G  +D    +P T 
Sbjct: 59  QVEIITREDSRALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFARQQPFTL 117

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDG 686
            +L  IE  + +II +N P    I +RE A       +   K   Y   +     + +D 
Sbjct: 118 DDLTIIEKKMREIIQRNKPFRKEIWSREKA-----RRVFSEKKEFYKVELINSIPDNQDL 172

Query: 687 GVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
            ++       LC G H+ STG+I     ++    +     R +A
Sbjct: 173 KIYYQGEWFDLCRGPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|20808138|ref|NP_623309.1| threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
 gi|22654110|sp|Q8R9A4|SYT_THETN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|20516726|gb|AAM24913.1| Threonyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4]
          Length = 644

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+++H+L  A+  +        G  I  +G  +D    +P T+ + ++IE+ +N II 
Sbjct: 80  YWHTSSHILAQAVKRLFKDVKLAIGPAID-NGFYYDFDTERPFTTEDFEAIEEEMNKIIK 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  +   ++++E+AI           Y   +     E E+   +       LC G H+ 
Sbjct: 139 EDYKLERFVLSKEEAIKF--MKEKDEPYKVELIEEIPEGEEISFYKQGEFVDLCAGPHLP 196

Query: 701 STGEIMLLYIVSESS 715
           STG +  + ++S + 
Sbjct: 197 STGMVKAIKLLSVAG 211


>gi|118479724|ref|YP_896875.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|118418949|gb|ABK87368.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 646

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 59  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 117

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 118 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 171

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 172 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 214

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 215 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 258


>gi|30264646|ref|NP_847023.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47530117|ref|YP_021466.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187467|ref|YP_030719.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49481700|ref|YP_038622.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52140935|ref|YP_085897.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|65321944|ref|ZP_00394903.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
 gi|165871455|ref|ZP_02216102.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167636725|ref|ZP_02395009.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167642081|ref|ZP_02400304.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170689721|ref|ZP_02880895.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170708708|ref|ZP_02899146.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177653139|ref|ZP_02935426.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196042361|ref|ZP_03109631.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218905803|ref|YP_002453637.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225866553|ref|YP_002751931.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|227817360|ref|YP_002817369.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|228917215|ref|ZP_04080772.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929623|ref|ZP_04092641.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935883|ref|ZP_04098693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948301|ref|ZP_04110584.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229093673|ref|ZP_04224773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|229124142|ref|ZP_04253334.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|229186832|ref|ZP_04313987.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|229601552|ref|YP_002868855.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254686931|ref|ZP_05150789.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254720893|ref|ZP_05182684.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254736684|ref|ZP_05194390.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741722|ref|ZP_05199409.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254754681|ref|ZP_05206716.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254757513|ref|ZP_05209540.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30259321|gb|AAP28509.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47505265|gb|AAT33941.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181394|gb|AAT56770.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|49333256|gb|AAT63902.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974404|gb|AAU15954.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
 gi|164712752|gb|EDR18282.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167509956|gb|EDR85379.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167527843|gb|EDR90677.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170126388|gb|EDS95277.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170666324|gb|EDT17113.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172081663|gb|EDT66734.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|196026805|gb|EDX65442.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|218536622|gb|ACK89020.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|225787158|gb|ACO27375.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
 gi|227005330|gb|ACP15073.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|228596569|gb|EEK54234.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|228659444|gb|EEL15092.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228689760|gb|EEL43567.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228811288|gb|EEM57626.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228823651|gb|EEM69473.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830010|gb|EEM75629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842416|gb|EEM87507.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229265960|gb|ACQ47597.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 645

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|288937212|ref|YP_003441271.1| threonyl/alanyl tRNA synthetase SAD [Klebsiella variicola At-22]
 gi|288891921|gb|ADC60239.1| Threonyl/alanyl tRNA synthetase SAD [Klebsiella variicola At-22]
          Length = 209

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 75/215 (34%), Gaps = 37/215 (17%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A +  +  +  D+T F+ + GGQ  D G   G  +   I        G  V H  +    
Sbjct: 23  AEADGRYAIELDRTLFHPQGGGQPADRGWIAGQAVETVIV------RGDSVLH--ILSQA 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     + + ID   R+  +  HSA HLL  A   +    V    +   P   R   T  
Sbjct: 75  LPRGD-VEMKIDASARQLHARLHSAGHLLGLAGEQLGWQPV---KAHHWPGEGRITFTSR 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
                 +  ++   V    AQ+LP      +                      +  V + 
Sbjct: 131 NNAALPDASALLAPVKAWQAQDLPRQVTFAD---------------------GLRQVGFG 169

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +   +    CGGTHV+   E+  + +VS+  I+ G
Sbjct: 170 ELPAY---PCGGTHVARLAELGDV-VVSQIKIKKG 200


>gi|49475537|ref|YP_033578.1| threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
 gi|73919770|sp|Q6G3K1|SYT_BARHE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49238343|emb|CAF27567.1| Threonyl-tRNA synthetase [Bartonella henselae str. Houston-1]
          Length = 658

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE
Sbjct: 66  EDTRALELIRHDCAHVLAEAVQELFPGTQVTIGPVI-ENGFYYDFARQQPFTLDDLTIIE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             + +II +N P    + +R+ A      +  G  Y   +     + +D  V+       
Sbjct: 125 KKMREIIQRNKPFRKEVWSRKKAREIF--SEKGELYKVELIDSIPDNQDLKVYYQGDWFD 182

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           LC G H+ STG+I     ++    +     R +A
Sbjct: 183 LCRGPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|301056082|ref|YP_003794293.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300378251|gb|ADK07155.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 645

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +     V      +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKVELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +AI          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEAIRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|154487350|ref|ZP_02028757.1| hypothetical protein BIFADO_01200 [Bifidobacterium adolescentis
           L2-32]
 gi|154083868|gb|EDN82913.1| hypothetical protein BIFADO_01200 [Bifidobacterium adolescentis
           L2-32]
          Length = 677

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 70/217 (32%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 48  ELHDGDVVEPIALDSEDGVAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
              P T  +LK IE  +  II  +     R++  E+A+A  A              + D 
Sbjct: 106 VETPFTPEDLKEIEKRMQRIIKSSQSFRRRVVTEEEALAEEADQPYKLELIKDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 166 EAATEISGKELSFYDNVDREGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 219

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 220 --GSEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 254


>gi|49479942|ref|YP_036488.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|218903521|ref|YP_002451355.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228927442|ref|ZP_04090498.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121934|ref|ZP_04251153.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|49331498|gb|AAT62144.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|218538936|gb|ACK91334.1| threonyl-tRNA synthetase [Bacillus cereus AH820]
 gi|228661583|gb|EEL17204.1| Threonyl-tRNA synthetase [Bacillus cereus 95/8201]
 gi|228832235|gb|EEM77816.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 639

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGNVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ V    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKVERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|323137534|ref|ZP_08072611.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
 gi|322397160|gb|EFX99684.1| threonyl-tRNA synthetase [Methylocystis sp. ATCC 49242]
          Length = 643

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++ +  +        R    I H A H+L  A+  +        G  I  +G  +D   
Sbjct: 50  PVKQDAKIEFVSREDPRALELIRHDAAHVLAEAVQELYPGTQVTIGPVI-ENGFYYDFHR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           ++P T  +L +IE  + +I+A++ P+V    +R+ A     A   G  +   +       
Sbjct: 109 AEPFTLEDLPAIEKKMREIVARDAPIVREEWDRDHARTWFIAK--GETFKGELIDSIKSD 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           E   V+       LC G H+ S G+I     ++    +     R
Sbjct: 167 EPLSVYKQGHWLDLCRGPHLPSVGKIGTAFKLMK---VAGAYWR 207


>gi|319776351|ref|YP_004138839.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|329123506|ref|ZP_08252070.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
 gi|317450942|emb|CBY87169.1| threonyl-tRNA synthetase [Haemophilus influenzae F3047]
 gi|327471088|gb|EGF16543.1| threonine--tRNA ligase [Haemophilus aegyptius ATCC 11116]
          Length = 643

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 65/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GESYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|126174365|ref|YP_001050514.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|153000743|ref|YP_001366424.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217973356|ref|YP_002358107.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
 gi|166225497|sp|A3D4I2|SYT_SHEB5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225498|sp|A6WNH2|SYT_SHEB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783536|sp|B8EES6|SYT_SHEB2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125997570|gb|ABN61645.1| threonyl-tRNA synthetase [Shewanella baltica OS155]
 gi|151365361|gb|ABS08361.1| threonyl-tRNA synthetase [Shewanella baltica OS185]
 gi|217498491|gb|ACK46684.1| threonyl-tRNA synthetase [Shewanella baltica OS223]
          Length = 642

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  ++ ++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDIDLEHKLTQDDIDALEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++ ++A  + AA   G  Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFAAR--GEDYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   I     R
Sbjct: 188 PNMRFCQHFKLMS---IAGAYWR 207


>gi|170748342|ref|YP_001754602.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
 gi|170654864|gb|ACB23919.1| threonyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D     P T  +   IE  +
Sbjct: 66  RSLELIRHDCAHVLAEAVQALWPETQVTIGPVI-ENGFYYDFHRETPFTPEDFPKIEAKM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++ P    +  R+D    G  A  G  +   +       ED  ++       LC 
Sbjct: 125 REIIARDAPFTKEVWTRDDV--RGLFAGKGEGFKVELVDAIPPGEDLKIYRQGDWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG++     ++    +     R
Sbjct: 183 GPHMTSTGKVGTAFKLMK---VAGAYWR 207


>gi|312879874|ref|ZP_07739674.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
 gi|310783165|gb|EFQ23563.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Aminomonas
           paucivorans DSM 12260]
          Length = 631

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL+  A+  +        G  +  DG  +DV   + +T  +L  I+  ++ I+ 
Sbjct: 69  LRHSAAHLMAQAIRRLFPEARFGIGPAV-KDGFYYDVLPPRALTEEDLPVIQAEMDRIVQ 127

Query: 645 QNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +++ V  R++ RE+ I        +   +    +    +     G     LC G HV ST
Sbjct: 128 EDVRVERRVLPREEVIRLFRQRGEIFKLELLGEIPDEEISTYWQGDFVD-LCRGPHVPST 186

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL---KVSQGNVVGR 759
             +  + ++S             + G  A      ++  L  +       K S    + R
Sbjct: 187 SLLRHVKLLS-------------LAG--AYWRGNEKNVMLTRIYGTAFGDKASLEQHLKR 231

Query: 760 VEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           +EE  +  +RKL        LQ             +  +  ++
Sbjct: 232 LEEAKQRDHRKLGRELDLFSLQPEAPGFPFFHPKGMVVLGELV 274


>gi|301053905|ref|YP_003792116.1| threonyl-tRNA synthetase [Bacillus anthracis CI]
 gi|300376074|gb|ADK04978.1| threonyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI]
          Length = 639

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ V    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKVERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|269963856|ref|ZP_06178168.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
 gi|269831343|gb|EEZ85490.1| threonyl-tRNA synthetase [Vibrio harveyi 1DA3]
          Length = 655

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 86  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 144

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 145 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 202

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 203 NMSFCQHFTLL---NVAGAYWR 221


>gi|154253109|ref|YP_001413933.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
 gi|189083615|sp|A7HWJ3|SYT_PARL1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|154157059|gb|ABS64276.1| threonyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 652

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600
           ++I    K    +    A VE     T   + L           + H A+H++  A+  +
Sbjct: 38  IKIDGQMKDLSTVIDRDAEVEIVTRETPDGVDL-----------LRHDASHVMAEAVQEL 86

Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660
                   G  I  +G  +D   ++P  + +L+ IE  + +I+ ++  +   + +R+ A+
Sbjct: 87  FPGTQVTIGPVI-ENGFYYDFARAEPFKAEDLEKIEQRMREIVDRDETITREVWDRDAAV 145

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI 716
                  +G  Y   +       E   V+       LC G H+ STG++        + +
Sbjct: 146 EYF--KKIGEIYKAEIIASIPAGEQVSVYRQGNWLDLCRGPHLPSTGKLG--KAFKLTKL 201

Query: 717 RAGIRR 722
                R
Sbjct: 202 AGAYWR 207


>gi|312143811|ref|YP_003995257.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904462|gb|ADQ14903.1| threonyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 652

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 85/217 (39%), Gaps = 31/217 (14%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID +   ++   H+A+H++  A+  +  +     G  I  DG  +D    +      
Sbjct: 61  IITIDSEEGLEVIR-HTASHVMAQAVKRLYDNVQVAIGPDI-EDGFYYDFDLEESFNQES 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS- 690
           L+ IE  +  II +++ V  + + RE+AIA         + N+  ++  +   D  + S 
Sbjct: 119 LEEIEAEMQKIIDEDIEVRRKELPREEAIALM------EERNEDYKIELINGLDDEMISL 172

Query: 691 ------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                   LC G H+ STG +    +++ +                A       +  L+ 
Sbjct: 173 YFQGDFVDLCRGPHLPSTGYVKAFKLLNTAG---------------AYWRGDENNAMLQR 217

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           +      SQ  +   +E   EE +K       R+L L
Sbjct: 218 IYGTAFASQKELEKYLER-REEAKKRDHNKLGRELDL 253


>gi|258614837|ref|ZP_05712607.1| alanyl-tRNA synthetase [Enterococcus faecium DO]
          Length = 81

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 825 IMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           I+++   +E K S+L  +T++       A DL +  A  +GGGGG GRP MAQ+GG N  
Sbjct: 7   ILVLANEQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVGGGGG-GRPDMAQAGGKNPA 65

Query: 884 KADQAIAGVASFLKK 898
               A+     ++ +
Sbjct: 66  GIPDALKAAKEWVAQ 80


>gi|242278776|ref|YP_002990905.1| threonyl/alanyl tRNA synthetase SAD [Desulfovibrio salexigens DSM
           2638]
 gi|242121670|gb|ACS79366.1| Threonyl/alanyl tRNA synthetase SAD [Desulfovibrio salexigens DSM
           2638]
          Length = 147

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 8/145 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HSA H+L+  +          + + I     + D    + +T  E   IE  VN+ I+
Sbjct: 8   RMHSAEHILNQVMVRKFDCDRCFS-AHINKKKSKCDYNFERGLTDVEASEIEHGVNEAIS 66

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L V  ++++ ++A        L     + VRVV++     G   +  C G HV ++ E
Sbjct: 67  SGLVVTEQMISLKEADERFNLTRLPEGVTE-VRVVNI-----GDFDACPCIGEHVENSNE 120

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQ 729
           I    +VS  S   G+ RI    G+
Sbjct: 121 IGEFKMVSH-SFDDGVLRIRYKLGE 144


>gi|82543879|ref|YP_407826.1| threonyl-tRNA synthetase [Shigella boydii Sb227]
 gi|187734126|ref|YP_001880509.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
 gi|123769450|sp|Q321L0|SYT_SHIBS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689503|sp|B2U397|SYT_SHIB3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|81245290|gb|ABB65998.1| threonine tRNA synthetase [Shigella boydii Sb227]
 gi|187431118|gb|ACD10392.1| threonyl-tRNA synthetase [Shigella boydii CDC 3083-94]
          Length = 642

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++   A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHAARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 241


>gi|262394487|ref|YP_003286341.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338081|gb|ACY51876.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 642

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 190 NMSFCQHFTLL---NVAGAYWR 208


>gi|210623612|ref|ZP_03293938.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
 gi|210153482|gb|EEA84488.1| hypothetical protein CLOHIR_01888 [Clostridium hiranonis DSM 13275]
          Length = 638

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G  + D   +I +G+   I   +   E + +         L  + S+ L        +
Sbjct: 14  ESGVSVLDVAKSISEGLARSIVAAEVDGEVVGLDTV------LDKDCSVNLLKFEDKEGR 67

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H+++H+L  A+  +        G  I  +G  +D+     +   +L+++E  +  I
Sbjct: 68  EVFRHTSSHILAQAIKRLYPEAKLAIGPAID-NGFYYDIDLEHSLVPEDLEALEKEMKKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
             ++L +    + RE+AI        G  Y   +     E      +       LC G H
Sbjct: 127 AKEDLKIERFELPREEAIK--LMQEKGEDYKVELIEDLPEDAVISFYKQGDFTDLCAGPH 184

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + ST ++  + + S   +     R
Sbjct: 185 LLSTKKVKAVKLTS---VAGAYWR 205


>gi|228933677|ref|ZP_04096525.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826004|gb|EEM71789.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 639

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGNVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ V    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKVERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG + +  +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKVFQLTHVSG 206


>gi|304408774|ref|ZP_07390395.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|307302777|ref|ZP_07582532.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
 gi|304352595|gb|EFM16992.1| threonyl-tRNA synthetase [Shewanella baltica OS183]
 gi|306913137|gb|EFN43559.1| threonyl-tRNA synthetase [Shewanella baltica BA175]
          Length = 642

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  ++ ++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDIDLEHKLTQDDIDALEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V+ R+++ ++A  + AA   G  Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVIKRVVSWQEARDTFAAR--GEDYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   I     R
Sbjct: 188 PNMRFCQHFKLMS---IAGAYWR 207


>gi|30262390|ref|NP_844767.1| threonyl-tRNA synthetase [Bacillus anthracis str. Ames]
 gi|47527681|ref|YP_019030.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185231|ref|YP_028483.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|165870612|ref|ZP_02215266.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167633022|ref|ZP_02391348.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|167639601|ref|ZP_02397871.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|170686938|ref|ZP_02878157.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|170706731|ref|ZP_02897190.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|177649587|ref|ZP_02932589.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190565155|ref|ZP_03018075.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227814802|ref|YP_002814811.1| threonyl-tRNA synthetase [Bacillus anthracis str. CDC 684]
 gi|229603163|ref|YP_002866723.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
 gi|254684964|ref|ZP_05148824.1| threonyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254722370|ref|ZP_05184158.1| threonyl-tRNA synthetase [Bacillus anthracis str. A1055]
 gi|254737411|ref|ZP_05195115.1| threonyl-tRNA synthetase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743403|ref|ZP_05201088.1| threonyl-tRNA synthetase [Bacillus anthracis str. Kruger B]
 gi|254751726|ref|ZP_05203763.1| threonyl-tRNA synthetase [Bacillus anthracis str. Vollum]
 gi|254760245|ref|ZP_05212269.1| threonyl-tRNA synthetase [Bacillus anthracis str. Australia 94]
 gi|30257021|gb|AAP26253.1| threonine--tRNA ligase [Bacillus anthracis str. Ames]
 gi|47502829|gb|AAT31505.1| threonyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179158|gb|AAT54534.1| threonyl-tRNA synthetase [Bacillus anthracis str. Sterne]
 gi|164713767|gb|EDR19290.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0488]
 gi|167512310|gb|EDR87686.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0193]
 gi|167531834|gb|EDR94499.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0442]
 gi|170128462|gb|EDS97330.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0389]
 gi|170668989|gb|EDT19733.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0465]
 gi|172084661|gb|EDT69719.1| threonyl-tRNA synthetase [Bacillus anthracis str. A0174]
 gi|190563182|gb|EDV17147.1| threonyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227004862|gb|ACP14605.1| threonine--tRNA ligase [Bacillus anthracis str. CDC 684]
 gi|229267571|gb|ACQ49208.1| threonine--tRNA ligase [Bacillus anthracis str. A0248]
          Length = 639

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGNVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ V    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKVERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG + +  +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKVFQLTHVSG 206


>gi|258544548|ref|ZP_05704782.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
 gi|258520179|gb|EEV89038.1| threonine--tRNA ligase [Cardiobacterium hominis ATCC 15826]
          Length = 639

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 27/220 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ +    ++     I HS  HLL HAL  +        G  I  +G  +D+  
Sbjct: 50  PITADASVAIITAKEDAGVDIIRHSTAHLLGHALKQLWPEAKMVIGPVI-ENGFYYDIDS 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L+ +E  + D+ A    V        DA  +        ++ D    +  ++
Sbjct: 109 EHRFTPEDLEKLEARMKDLAATGYAVEKVWTPVADARKA-----FSDRHEDFKLRLIDDF 163

Query: 684 ED----GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSI-----RAG--IRRIEAITG 728
           +D     G++       +C G HV   G +    +   S        +G  ++RI  +  
Sbjct: 164 DDSVKEVGLYHHQEYLDMCRGPHVPHMGHVKAFKLTKLSGSYWRGDASGEPLQRIYGV-- 221

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--EIWEE 766
             A +     D  L+  A   K     +  +++   + EE
Sbjct: 222 --AFADQKTLDAYLQQQAEAEKRDHRRIGKQLDFFHLQEE 259


>gi|307256244|ref|ZP_07538030.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306865263|gb|EFM97160.1| Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
          Length = 643

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L +IE  +  +  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLGLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + ++ ++A  +      G  Y   +   ++E               +C G HV
Sbjct: 130 TNYDVVKKRVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYLHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|229102972|ref|ZP_04233661.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228680387|gb|EEL34575.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
          Length = 640

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HS  H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDQLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSVAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMRNIIKENISIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G HV STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHVPSTGYLKAFQLTHVSG 206


>gi|159043329|ref|YP_001532123.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
 gi|189083606|sp|A8LQX9|SYT_DINSH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157911089|gb|ABV92522.1| threonyl-tRNA synthetase [Dinoroseobacter shibae DFL 12]
          Length = 654

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 17/176 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDCAHIMARAVQEIWPDVKVTIGPVI-ENGFYYDFDRAEPFTPEDLGAIEAKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
              PV T + +R  AIA   A   G  Y   +       E            LC G H+ 
Sbjct: 133 ARDPVRTEVWDRPRAIAHYEAN--GEPYKVELIEAIPGNEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEIML--LYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            TG++      ++S +       S R  ++RI  +  Q  R  L      L+  A 
Sbjct: 191 HTGQVPADSFKLMSVAGAYWRGDSSRPMLQRIYGVAFQN-RDALKKHLHMLEEAAK 245


>gi|254230539|ref|ZP_04923908.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|151936930|gb|EDN55819.1| threonyl-tRNA synthetase [Vibrio sp. Ex25]
          Length = 254

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 86  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 144

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 145 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 202

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 203 NMSFCQHFTLL---NVAGAYWR 221


>gi|328472989|gb|EGF43837.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus 10329]
          Length = 642

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEQRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           + G      ++   ++     R
Sbjct: 190 NMGFCQHFTLL---NVAGAYWR 208


>gi|319897020|ref|YP_004135215.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
 gi|317432524|emb|CBY80883.1| threonyl-tRNA synthetase [Haemophilus influenzae F3031]
          Length = 643

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  ++ +IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPNVKMAIGPTI-ENGFYYDVDLDRSLTQEDIDAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++E          +    +C G HV
Sbjct: 130 TNYDVVKKRVTWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHLEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K LA +L         R
Sbjct: 188 PNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL-TRLEEAAKR 242


>gi|329115645|ref|ZP_08244367.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326695073|gb|EGE46792.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 645

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   S+P +  +  +IE  + +I+A
Sbjct: 73  IRHDAAHVLAEAVQALYPGTQVTIGPSI-ENGFYYDFYRSEPFSPEDFAAIEAKMREIVA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P V  +  R+DAI        G K+   +     E E+  ++       LC G H+ 
Sbjct: 132 KAEPFVREVWKRDDAIQFFEDR--GEKFKAELIRDLPEDEEISIYRQGEWLDLCRGPHLR 189

Query: 701 STGEIM-LLYIVSESSIRAGIRR 722
           +T ++     ++    +     R
Sbjct: 190 TTKDVGNAFKLMK---VAGAYWR 209


>gi|313885013|ref|ZP_07818765.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619704|gb|EFR31141.1| threonine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 651

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 13/171 (7%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K +G  +         +  + ++ +  D        + HS  HL+  A+  +        
Sbjct: 41  KLDGQIIDF----HQPIEQDGAIEIITDKSPEALDLLRHSTAHLMAQAMKRLYPEIHFGV 96

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  I  +G  +D    + +T A+L  IE  +  I++QN P+  R+++RE+A+        
Sbjct: 97  GPAI-ENGFYYDTDKPEALTDADLPKIEKEMKKIVSQNYPIEGRVVSREEALDIFQ---- 151

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
              Y   +     E E+  V++      LC G HV STG+I    ++S + 
Sbjct: 152 DDPYKVELINDLPENEEISVYTQGEFTDLCRGGHVPSTGKIKAFKLLSLAG 202


>gi|222100818|ref|YP_002535386.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
 gi|254783544|sp|B9KAN7|SYT_THENN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221573208|gb|ACM24020.1| Threonyl-tRNA synthetase [Thermotoga neapolitana DSM 4359]
          Length = 640

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
             H+  H+L  A+  + G    + G   T  +G  +D    +  +T  +L  IE  +  I
Sbjct: 69  YRHTMAHILAQAVMRLYGKENVKLGIGPTIENGFYYDFDIRNGKLTEEDLPRIEQEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I +NLP+    +++++A           +  + +   +V     G     LC G H+ ST
Sbjct: 129 IKENLPIEREEISKDEAKEIFKDQPYKLELIEEIEGDTVTIYRQGEFVD-LCRGPHLPST 187

Query: 703 GEIMLLYIVSESS 715
           G +    ++S S 
Sbjct: 188 GVVKHFKLLSVSG 200


>gi|89892986|ref|YP_516473.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense Y51]
 gi|89332434|dbj|BAE82029.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 641

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +    +   G  I  +G  +D       T  +L+ IE  +  ++ 
Sbjct: 74  LRHSTSHLMAEAVRNLFPGTILGIGPAID-NGFYYDFDSEHVFTPEDLEKIEAEMRRLVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N     + ++R DA+   +A   G KY   +     E E   +++      LC G H+ 
Sbjct: 133 ENKRYERKEISRSDALQYFSA--EGEKYKVELIEDLPEDEVISMYTQGGFTDLCAGPHIP 190

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG +    +++             + G  A      +++ L+ +   +   + ++   +
Sbjct: 191 STGVVKAFKLMN-------------LAG--AYWRGSEKNKMLQRIYGTVWAKKEDLDDYL 235

Query: 761 EEIWEEYRK 769
            ++ E  R+
Sbjct: 236 FKLEEAKRR 244


>gi|323484406|ref|ZP_08089772.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
 gi|323402184|gb|EGA94516.1| hypothetical protein HMPREF9474_01523 [Clostridium symbiosum
           WAL-14163]
          Length = 645

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ +L  IE  +  II
Sbjct: 70  ALRHTASHVMAQAVKRLYPDTKLAIGPSI-ADGFYYDVDPATPLTAEDLPKIETEMKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            + L +    ++RE+AIA          Y   +     E  +   +       LC G H+
Sbjct: 129 KEGLALERFTLSREEAIA--LMKEKEEPYKVELIEDLPEDAEISFYRQGEFTDLCAGPHL 186

Query: 700 SSTGEIM-LLYIVSESS-------IRAGIRRIEAI--TGQRARSHLMGQDEKLKS 744
            +T  +     +++ +            + RI A    G+      +   E+ + 
Sbjct: 187 MNTKGVGKAFKLMNLAGAYWRGSEKNKMLTRIYATAFAGKEELESYLRMMEEARK 241


>gi|323692417|ref|ZP_08106653.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
 gi|323503557|gb|EGB19383.1| threonine-tRNA ligase [Clostridium symbiosum WAL-14673]
          Length = 645

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H++  A+  +        G  I  DG  +DV  + P+T+ +L  IE  +  II
Sbjct: 70  ALRHTASHVMAQAVKRLYPDTKLAIGPSI-ADGFYYDVDPATPLTAEDLPKIETEMKKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            + L +    ++RE+AIA          Y   +     E  +   +       LC G H+
Sbjct: 129 KEGLALERFTLSREEAIA--LMKEKEEPYKVELIEDLPEDAEISFYRQGEFTDLCAGPHL 186

Query: 700 SSTGEIM-LLYIVSESS-------IRAGIRRIEAI--TGQRARSHLMGQDEKLKS 744
            +T  +     +++ +            + RI A    G+      +   E+ + 
Sbjct: 187 MNTKGVGKAFKLMNLAGAYWRGSEKNKMLTRIYATAFAGKEELESYLRMMEEARK 241


>gi|253989346|ref|YP_003040702.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780796|emb|CAQ83958.1| threonyl-tRNA synthetase [Photorhabdus asymbiotica]
          Length = 642

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 60/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDLGRALTQEDIELLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  +      G  Y  ++   ++  +D  G+++      +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFVVR--GEDYKVQILDENIGRDDHPGLYNHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     +     R
Sbjct: 188 PNMRFCHHFKL---QKVAGAYWR 207


>gi|28898054|ref|NP_797659.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362413|ref|ZP_05775365.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
 gi|260878403|ref|ZP_05890758.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|31340445|sp|Q87Q70|SYT_VIBPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28806268|dbj|BAC59543.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308091059|gb|EFO40754.1| threonine--tRNA ligase [Vibrio parahaemolyticus AN-5034]
 gi|308115583|gb|EFO53123.1| threonine--tRNA ligase [Vibrio parahaemolyticus K5030]
          Length = 642

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           + G      ++   ++     R
Sbjct: 190 NMGFCQHFTLL---NVAGAYWR 208


>gi|227485697|ref|ZP_03916013.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236252|gb|EEI86267.1| threonine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 640

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 22/176 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G  I  DG  +D+      T  +L+ IE  + +I  ++
Sbjct: 73  HTTSHVMAAAIKELWPETKFAIGPAI-ADGFYYDMDLEHRFTPEDLEQIEKKMKEIAKKD 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           L +    ++R++A+        G  Y      D  +   +     G   + LC G H+ S
Sbjct: 132 LKLERIEVSRDEALKMF--KEEGQDYKVELIEDLPKDELITLYKIGDAFTDLCRGPHLES 189

Query: 702 TGEIMLLYIVSESSIRAGIR----------RIEAITGQRARSHLMGQDEKLKSLAS 747
           T EI  + +    +I               RI  I+  +A   L   +E  K +A 
Sbjct: 190 TKEIKAIKL---KAIAGAYWRGDSDKAMLQRIYGISFPKA-KDLEEYEELQKEIAR 241


>gi|161503559|ref|YP_001570671.1| threonyl-tRNA synthetase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864906|gb|ABX21529.1| hypothetical protein SARI_01637 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 622

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++  DA  +      G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KDYDVIKKKVSWHDARETFVKR--GETYKVAILDENIAHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|219666254|ref|YP_002456689.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536514|gb|ACL18253.1| threonyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 639

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +HL+  A+  +    +   G  I  +G  +D       T  +L+ IE  +  ++ 
Sbjct: 72  LRHSTSHLMAEAVRNLFPGTILGIGPAID-NGFYYDFDSEHVFTPEDLEKIEAEMRRLVK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N     + ++R DA+   +A   G KY   +     E E   +++      LC G H+ 
Sbjct: 131 ENKRYERKEISRSDALQYFSA--EGEKYKVELIEDLPEDEVISMYTQGGFTDLCAGPHIP 188

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG +    +++             + G  A      +++ L+ +   +   + ++   +
Sbjct: 189 STGVVKAFKLMN-------------LAG--AYWRGSEKNKMLQRIYGTVWAKKEDLDDYL 233

Query: 761 EEIWEEYRK 769
            ++ E  R+
Sbjct: 234 FKLEEAKRR 242


>gi|290473558|ref|YP_003466428.1| putative metal-dependent hydrolases [Xenorhabdus bovienii SS-2004]
 gi|289172861|emb|CBJ79632.1| putative Predicted metal-dependent hydrolases [Xenorhabdus bovienii
           SS-2004]
          Length = 227

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 34/232 (14%)

Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553
             +  GE++          +  +   F+ + GGQ  D G        + +  V+K+A G 
Sbjct: 13  CFLSTGEVIANGSDEWGQWIALNNNIFHPQGGGQPADIGWVNN----IPVK-VRKQATGQ 67

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
            V +             L   +  + R   +  H+A HLL+  +    G    +      
Sbjct: 68  VVVYPE-SALHAPPGAQLNSKLSEEARICHAALHTAGHLLNWEMRQ-YGWMAIKGHHFPG 125

Query: 614 PDGLRFDVTHSKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
              + F    S  I S +  L++IE  +N  +     V T                    
Sbjct: 126 ESRVEFSPMGSSAIPSDQLSLQNIETTINTRLRDGGQVTTW------------------- 166

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           Y    R+  +E  +        C GTHV +  +I    I S    +    RI
Sbjct: 167 YEADTRLCLIEGTEP-----MPCAGTHVDNLNKINEFTIKSV-KFKKETLRI 212


>gi|229817631|ref|ZP_04447913.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
 gi|229785420|gb|EEP21534.1| hypothetical protein BIFANG_02901 [Bifidobacterium angulatum DSM
           20098]
          Length = 677

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 71/219 (32%), Gaps = 32/219 (14%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++    +D ++   +   HSATH++  A+  I  +     G  I  DG  +D  
Sbjct: 48  PLSDGDTVEGIALDSEDGIAIMR-HSATHVMAQAVQEIYPNAKLGVGPVI-KDGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIA-------------------QNLPVVTRIMNREDAIASG 663
             +P T  +LK+IE  +  II                     + P    ++  ++A    
Sbjct: 106 VEQPFTPEDLKNIEKRMQRIIKSSQSFRRRVVTEEEALAEEADQPYKIELIKDKEAHLDP 165

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
           AAA         +        DG V    LC G H+ +T  I    I       A   R 
Sbjct: 166 AAAT--EVSEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR- 219

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
               G  A   L        +    LK  Q  +    + 
Sbjct: 220 ----GSEANPMLQRIYGAAFATKEDLKAYQTRLEEAAKR 254


>gi|320173198|gb|EFW48409.1| Threonyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112]
 gi|320185858|gb|EFW60609.1| Threonyl-tRNA synthetase [Shigella flexneri CDC 796-83]
 gi|332096305|gb|EGJ01306.1| threonyl-tRNA synthetase [Shigella boydii 3594-74]
          Length = 622

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++   A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHAARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNAYLQRLEEAAK 221


>gi|332141016|ref|YP_004426754.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|238693239|sp|B4RSL8|SYT_ALTMD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|327551038|gb|AEA97756.1| threonyl-tRNA synthetase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 638

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L  +E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDMEESLTQEDLAKLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV   ++ ++A  +  A   G  Y   +   ++  +D          + +C G HV
Sbjct: 130 TNYNVVKNKVSWQEARDAFEAR--GESYKMEILDENISKDDRPALYQHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++    +     R
Sbjct: 188 PNMKFCHHFKLMK---VAGAYWR 207


>gi|294677983|ref|YP_003578598.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
 gi|294476803|gb|ADE86191.1| threonyl-tRNA synthetase [Rhodobacter capsulatus SB 1003]
          Length = 648

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 17/176 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G          D   ++P T  +L  IE  +  II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDVKVTIGPVRDAGWFY-DFDRAEPFTPEDLGQIEARMKQIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
              PV T + +REDAIA    +     Y   +     E ED  ++       LC G H+ 
Sbjct: 133 AREPVRTEVWSREDAIAHYEKS--NEPYKVELVNRIPEGEDLRMYWHGNWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESS---IRAGIR----RIEAITGQRARSHLMGQDEKLKSLAS 747
            TG++      +   +    +    R    RI  I   R R  L      L+  A 
Sbjct: 191 HTGQVPADAFKLTHVAGAYWLGDSTRPMLQRIYGIA-FRTRDDLKAHMTMLEEAAK 245


>gi|296133381|ref|YP_003640628.1| threonyl-tRNA synthetase [Thermincola sp. JR]
 gi|296031959|gb|ADG82727.1| threonyl-tRNA synthetase [Thermincola potens JR]
          Length = 637

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 9/144 (6%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      HS++H+L  A+  +        G  I  DG  +D    +  T  +L+ I
Sbjct: 66  DEEGRE--VFRHSSSHVLAQAVKHLFPETKLGIGPAI-ADGYYYDFDVKENFTPEDLEKI 122

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  +  I+ Q+LP     ++RE+A+       +G  Y   +     E      +      
Sbjct: 123 EKEMEKIVQQDLPFERSELSREEALKLFN--EMGEPYKVELINDLPEDAVISCYKQGDFV 180

Query: 692 ALCGGTHVSSTGEIMLLYIVSESS 715
            LC G HV STG++  + ++S + 
Sbjct: 181 DLCAGPHVPSTGKLKAIKLMSLAG 204


>gi|320536876|ref|ZP_08036869.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
 gi|320146259|gb|EFW37882.1| threonyl-tRNA synthetase [Treponema phagedenis F0421]
          Length = 583

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 8/145 (5%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           R   I HS  H++  A++ +        G  I   G  +D    +PIT  +L  IE  + 
Sbjct: 8   RLDMIRHSTAHVMAAAVTKLFKGTKVAIGPAIDY-GFYYDFELPRPITDEDLLHIEKEMR 66

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            I+  N      ++ R+ A+A        T+  N+      +     G     LC G HV
Sbjct: 67  KIVNGNHDFTKEVVTRDAALALFKDQPFKTELINELPADEEISIYRSGDFVD-LCRGPHV 125

Query: 700 SSTGEIML--LYIVSESSIRAGIRR 722
            +T EI      +     I     R
Sbjct: 126 QNTKEINAQSFKLTK---IAGAYWR 147


>gi|260899056|ref|ZP_05907497.1| threonine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
 gi|308088693|gb|EFO38388.1| threonine--tRNA ligase [Vibrio parahaemolyticus Peru-466]
          Length = 229

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           + G      ++   ++     R
Sbjct: 190 NMGFCQHFTLL---NVAGAYWR 208


>gi|116747872|ref|YP_844559.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116696936|gb|ABK16124.1| threonyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 644

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 17/190 (8%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI-----DYQNRRQLSINHSATHLLHHA 596
           ++        G            L   +     +     D +   ++   HSA H++  A
Sbjct: 25  EVLKASGGPNGWVAAKVNGVPVDLIVGIEEDAAVEGIRADSEVGLEILR-HSAAHVMAQA 83

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
           + ++        G  I  +G  +D    +P T  +L  IE  + +++   L    +++ R
Sbjct: 84  VKSLFPEARVAIGPAID-NGFYYDFEVERPFTQDDLDRIEAKMKELVGAKLKFERKVLPR 142

Query: 657 EDAIASGAAALLGTKYNDR----VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           ++AI        G  Y           +V +   G     LC G HV  +G +    + S
Sbjct: 143 DEAIDFFTRR--GEGYKVELLQGFSDPTVSFYTQGDFVD-LCRGPHVPHSGYVRAFKLTS 199

Query: 713 ESSIRAGIRR 722
              +     R
Sbjct: 200 ---VAGAYWR 206


>gi|88195489|ref|YP_500293.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|123003455|sp|Q2FXP7|SYT_STAA8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87203047|gb|ABD30857.1| threonyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329728437|gb|EGG64874.1| threonine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189]
          Length = 645

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L T+ S+ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+ HA+  + G +V      +   G  +D    + I+S + + IE  +  I+ 
Sbjct: 73  LRHSTAHLMAHAIKRLYG-NVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ +  ++++R++     +      +Y   +     E E+  ++S      LC G HV 
Sbjct: 132 ENMKIERKVVSRDEVKELFS----NDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STAKIKEFKLLSTAG 202


>gi|70729150|ref|YP_258886.1| alanyl-tRNA synthetase-like protein [Pseudomonas fluorescens Pf-5]
 gi|68343449|gb|AAY91055.1| alanyl-tRNA synthetase-related protein [Pseudomonas fluorescens
           Pf-5]
          Length = 233

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 37/226 (16%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           ++   E++      Q+  +  + TPF+ + GGQ  DTG   G    L++     +     
Sbjct: 37  LLTSVEVLSCIPHEQQFAITLNATPFHPQGGGQPSDTGWI-GQAAVLRVA----QEGEQI 91

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
           VH+       L   +     +D   R   S  HSA HL+ H + +     +    +   P
Sbjct: 92  VHY---LDQPLEPGI-FEARVDEAARLFNSRMHSAGHLIGHFVQSQGWIPI---KAHHWP 144

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
              R     ++     +  S++D +   I  +L   +                      D
Sbjct: 145 GEGRVSFKPAEQPREIDGASVQDAIAQWIEADLERHS-------------------TMAD 185

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
             R +S      G   +  CGGTHVS   ++  + I +  S++ G 
Sbjct: 186 GSRQISF-----GQLPAYGCGGTHVSHLQQLGAVLITAV-SLKKGT 225


>gi|330720856|gb|EGG99050.1| Threonyl-tRNA synthetase [gamma proteobacterium IMCC2047]
          Length = 639

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 21/196 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV     IT  +++++E  + +++ 
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVI-ENGFYYDVDLDHRITDEDMETLEKRMKELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
               V+ + ++  DA+   A    G  Y  ++    ++  D  G++       +C G HV
Sbjct: 130 TQYDVIKKKVSWHDALEVFAER--GESYKLQILQQDIDQSDSPGLYYHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            +        ++  S            ++RI       A +      + L  L    K  
Sbjct: 188 PNMRFCEHFKLMRVSGAYWRGDSDNKMLQRIYGT----AFADKKQLKKYLNFLEEASKRD 243

Query: 753 QGNVVGRVE--EIWEE 766
              +  +++   + EE
Sbjct: 244 HRKLAKKLDLFHLQEE 259


>gi|23099609|ref|NP_693075.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
 gi|73919811|sp|Q8EPF3|SYT_OCEIH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22777839|dbj|BAC14110.1| threonine-tRNA ligase [Oceanobacillus iheyensis HTE831]
          Length = 646

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS+ HLL  A+  +    V      +  +G  +D+     +T  +L  IE  +  II 
Sbjct: 73  LRHSSAHLLAQAIKRLFND-VKLGVGPVIEEGFYYDIDMEHKLTPEDLPKIEKEMKRIID 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL +    ++R  A      + +G      +     E E   ++       LC G HV 
Sbjct: 132 ENLEIKRVEVSRNKAQEMF--SDIGDDLKLELIDAIPENEQVTIYEQGEFFDLCRGIHVP 189

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S S 
Sbjct: 190 STSKIKAFKLLSISG 204


>gi|229175285|ref|ZP_04302800.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228608117|gb|EEK65424.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 645

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDAKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|116249546|ref|YP_765384.1| hypothetical protein pRL90092 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254194|emb|CAK03804.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 246

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 92/285 (32%), Gaps = 80/285 (28%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  +K +F   + P    V   Q C+R G    DLD +G    H   F MLG FSF    
Sbjct: 1   MQQYKPLF--SDPPHSGTVANSQACLRMG----DLDEIG-DGTHLLHFTMLGLFSFREMT 53

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162
              AI    + L     L     ++T++ +       W  +      ++  +   +  WS
Sbjct: 54  AGSAIDFWLEFL-GTLGLVPD--HVTIHPDRLVE---WTPLYR---GRVPIVPDPECMWS 104

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
                  G C+E + D                   +EI N+V                  
Sbjct: 105 DGSIS--GYCTEFYKDG------------------VEIGNIV------NPLGT------- 131

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282
            ID G GLER+  ++        +D    L +                          + 
Sbjct: 132 CIDVGFGLERLDMIVNGTP---QVDALGTLCE--------------------------TV 162

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
             ++  G  P N+ +GYVLR+++RR       L    P     + 
Sbjct: 163 MTIVESGYRPGNKEQGYVLRKLLRRIHKMGGTL--DHPFFAEEVE 205


>gi|15643503|ref|NP_228549.1| threonyl-tRNA synthetase [Thermotoga maritima MSB8]
 gi|8928373|sp|Q9WZJ9|SYT_THEMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4981265|gb|AAD35821.1|AE001744_11 threonyl-tRNA synthetase [Thermotoga maritima MSB8]
          Length = 640

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 5/196 (2%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +   +  D G  I      +   ++K    +        +  +  +  L L        
Sbjct: 8   PDGKEKEYDRG--ITPAEIAKELGIKKAIGAVVNGELWDLKRPIENDCELRLVTLEDPEA 65

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVTH-SKPITSAELKSIEDNV 639
                H+  H+L  A+  + G    + G   T  +G  +D    +  +T  +L  IE  +
Sbjct: 66  PEFYRHTMAHILAQAVMRLYGKENVKLGIGPTIENGFYYDFDIKNGRLTEEDLPKIEQEM 125

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             II +NLP+  + +++E+A           +  + +    V     G     LC G H+
Sbjct: 126 KKIIKENLPIERKEISKEEARELFRDQPYKLELIEEIEGNRVTIYRQGEFVD-LCRGPHL 184

Query: 700 SSTGEIMLLYIVSESS 715
            STG +    ++S S 
Sbjct: 185 PSTGIVKHFKLLSVSG 200


>gi|258543038|ref|YP_003188471.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634116|dbj|BAI00092.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637176|dbj|BAI03145.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640228|dbj|BAI06190.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643285|dbj|BAI09240.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646340|dbj|BAI12288.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649393|dbj|BAI15334.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652379|dbj|BAI18313.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655437|dbj|BAI21364.1| threonyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12]
          Length = 645

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   S+P +  +  +IE  + +I+A
Sbjct: 73  IRHDAAHVLAEAVQALYPGTQVTIGPSI-ENGFYYDFYRSEPFSPEDFAAIEAKMREIVA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P V  +  R+DAI        G K+   +     E E+  ++       LC G H+ 
Sbjct: 132 KAEPFVREVWKRDDAIRFFEER--GEKFKAELIRDLPEDEEISIYRQGEWLDLCRGPHLR 189

Query: 701 STGEIM-LLYIVSESSIRAGIRR 722
           +T ++     ++    +     R
Sbjct: 190 TTKDVGTAFKLMK---VAGAYWR 209


>gi|238757782|ref|ZP_04618965.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
 gi|238704025|gb|EEP96559.1| Threonyl-tRNA synthetase [Yersinia aldovae ATCC 35236]
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L  ++  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIDRTLTQEDLDLLDQRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A    AA   G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDVFAAR--GEDYKVAILDENISHDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYG-TAWGDKKQLNAYLQRLEEAAK 241


>gi|167855812|ref|ZP_02478565.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
 gi|167853091|gb|EDS24352.1| leucyl-tRNA synthetase [Haemophilus parasuis 29755]
          Length = 643

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+   + +T  +L ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDIDLDRSLTQEDLDALEARMLELAK 129

Query: 645 QNLPVVTRIMNREDAI-------ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            N  VV + ++ ++A         S   A+L    +   R     +E+       +C G 
Sbjct: 130 TNYDVVKKRVSWQEARDTFESRGESYKMAILDENISKDYRPALYHHEE----YIDMCRGP 185

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           HV +        +     +     R ++      R +     +K K LA +L
Sbjct: 186 HVPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLADYL 233


>gi|153839391|ref|ZP_01992058.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
 gi|149747086|gb|EDM58074.1| threonyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810]
          Length = 345

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           + G      ++   ++     R
Sbjct: 190 NMGFCQHFTLL---NVAGAYWR 208


>gi|114706249|ref|ZP_01439151.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
 gi|114538110|gb|EAU41232.1| threonyl-tRNA synthetase [Fulvimarina pelagi HTCC2506]
          Length = 670

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+  +        G  I  +G  +D     P T  +L  IE  +
Sbjct: 69  RALELIRHDCAHVLAEAVQELWPGTQVTIGPVI-ENGFYYDFHRETPFTPEDLPVIEKKM 127

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
           ++II +N P    + +R +A         G  +   +     E +D  ++       LC 
Sbjct: 128 SEIIQRNRPFTKEVWSRNEAREVFETK--GENFKVELVDAIPEDQDLKIYKQGEWFDLCR 185

Query: 696 GTHVSSTGEIM-LLYIVSESS 715
           G H++STG+I     ++  + 
Sbjct: 186 GPHMASTGQIGDAFKLMKTAG 206


>gi|157826951|ref|YP_001496015.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|166225492|sp|A8GVV1|SYT_RICB8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157802255|gb|ABV78978.1| threonyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 633

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 574 TIDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ID   R ++           I H A HL   A+  +        G  I  +G  +D   
Sbjct: 50  QIDNDCRLRILTAKDPECLEVIRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            KP T+ +L  IE  ++++  +N  V   + +RE A+    +  +G  Y   +       
Sbjct: 109 DKPFTTDDLAVIEAKMHELAKKNEKVTRELWDREKAVEFFKS--IGEHYKAEIIASIPSN 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E   ++       LC G H  STG +    ++    +     R
Sbjct: 167 EPISLYRQGNFIDLCRGPHAPSTGFVKHFKLMK---VAGAYWR 206


>gi|91205350|ref|YP_537705.1| threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
 gi|122990926|sp|Q1RJ48|SYT_RICBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91068894|gb|ABE04616.1| Threonyl-tRNA synthetase [Rickettsia bellii RML369-C]
          Length = 635

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 574 TIDYQNRRQLS----------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ID   R ++           I H A HL   A+  +        G  I  +G  +D   
Sbjct: 50  QIDNDCRLRILTAKDPECLEVIRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFAR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            KP T+ +L  IE  ++++  +N  V   + +RE A+    +  +G  Y   +       
Sbjct: 109 DKPFTTDDLAVIEAKMHELAKKNEKVTRELWDREKAVEFFKS--IGEHYKAEIIASIPSN 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           E   ++       LC G H  STG +    ++    +     R
Sbjct: 167 EPISLYRQGNFIDLCRGPHAPSTGFVKHFKLMK---VAGAYWR 206


>gi|229032221|ref|ZP_04188194.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
 gi|229076078|ref|ZP_04209046.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|229105203|ref|ZP_04235852.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228678129|gb|EEL32357.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-28]
 gi|228706941|gb|EEL59146.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-18]
 gi|228729001|gb|EEL80004.1| Threonyl-tRNA synthetase [Bacillus cereus AH1271]
          Length = 645

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDAKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|117621181|ref|YP_856850.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166223316|sp|A0KKP9|SYT_AERHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|117562588|gb|ABK39536.1| threonyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+   + +T  +L ++E+ +  + A
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDIDLDRTLTDEDLAALEERMLALAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A     A   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDVFEAR--GETYKVEILDQNIARDDQPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRHCHHFKLQKMSGAYWRGDSNNKMLQRIYG-TAWADKKQLKSYLQRLEEAAK 241


>gi|37680129|ref|NP_934738.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
 gi|37198875|dbj|BAC94709.1| threonyl-tRNA synthetase [Vibrio vulnificus YJ016]
          Length = 655

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 40/202 (19%)

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D    I +   L+I   + + +G+ +                              
Sbjct: 55  GQRVDACDLIEEDASLEIITTKDEVDGLEIV----------------------------- 85

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I  +G  +D+   + +T  +L+ IE  +  +   
Sbjct: 86  RHSCAHLLGHALKQLYPNAKMAIGPTID-NGFYYDIDLEESLTQEDLEKIEARMKALAKT 144

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 145 KYQVIKKKVSWQEARDAFEAR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 202

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 203 NMSFCQHFTLL---NVAGAYWR 221


>gi|27365716|ref|NP_761244.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
 gi|31340449|sp|Q8DA13|SYT_VIBVU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27361865|gb|AAO10771.1| threonyl-tRNA synthetase [Vibrio vulnificus CMCP6]
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 40/202 (19%)

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D    I +   L+I   + + +G+ +                              
Sbjct: 42  GQRVDACDLIEEDASLEIITTKDEVDGLEIV----------------------------- 72

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I  +G  +D+   + +T  +L+ IE  +  +   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-NGFYYDIDLEESLTQEDLEKIEARMKALAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVIKKKVSWQEARDAFEAR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 190 NMSFCQHFTLL---NVAGAYWR 208


>gi|302346650|ref|YP_003814948.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302150421|gb|ADK96682.1| threonine and Alanyine tRNA ligase second additional domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 155

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+ +    H+A HLL+  +  + G+  S N            +   KP    E K
Sbjct: 4   VLNSHNKEEFPPAHTAEHLLNQVMIRMFGTERSNNAHIERKKSKMTFILDHKPDRKEE-K 62

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IED +N +IA++LPV   +++R +         L    ++ +R+V +     G     L
Sbjct: 63  AIEDEMNRLIAEDLPVTFEMVDRNNIPEGVTVDRLPEDASEMLRLVRI-----GDFDICL 117

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV ST +I    ++ 
Sbjct: 118 CIGKHVRSTAQIGRFEMLG 136


>gi|56749447|sp|Q7MK65|SYT_VIBVY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 40/202 (19%)

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D    I +   L+I   + + +G+ +                              
Sbjct: 42  GQRVDACDLIEEDASLEIITTKDEVDGLEIV----------------------------- 72

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I  +G  +D+   + +T  +L+ IE  +  +   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-NGFYYDIDLEESLTQEDLEKIEARMKALAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVIKKKVSWQEARDAFEAR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 190 NMSFCQHFTLL---NVAGAYWR 208


>gi|23016433|ref|ZP_00056189.1| COG0441: Threonyl-tRNA synthetase [Magnetospirillum magnetotacticum
           MS-1]
          Length = 621

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D     P T  +L+ IE  + +I+ 
Sbjct: 55  LRHDAAHVMAEAVKELYPETQVTIGPSI-ENGFYYDFARPTPFTPDDLEKIEKRMAEIVD 113

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++  +     +R+ A+     A  G  Y   +       +  G++       LC G H+ 
Sbjct: 114 RDEAITREEWDRDTAVQFFLDA--GETYKAEIIASIPADQKIGLYRQGNFIDLCRGPHLP 171

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST ++          +     R
Sbjct: 172 STAKLG--KAFKLMKLAGAYWR 191


>gi|212715814|ref|ZP_03323942.1| hypothetical protein BIFCAT_00715 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661181|gb|EEB21756.1| hypothetical protein BIFCAT_00715 [Bifidobacterium catenulatum DSM
           16992]
          Length = 677

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 69/217 (31%), Gaps = 28/217 (12%)

Query: 564 ILRTEMSLVLTI-DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +   + D ++   +   HSATH++  A+  I        G  I  DG  +D  
Sbjct: 48  ELHDGDVVEPIVLDSEDGLAIMR-HSATHVMAQAVQEIRPDAKLGVGPVI-KDGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
              P T  +LK IE  +  II  +     R++  E+A+A  A              + D 
Sbjct: 106 VETPFTPDDLKEIEKRMQRIIKSSQSFRRRVVTEEEALAEEADQPYKLELIKDKEAHLDP 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                +  ++   +             LC G H+ +T  I    I       A   R   
Sbjct: 166 EAATEISGKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKI---ERSAAAYWR--- 219

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             G  A   L        +    LK  Q  +    + 
Sbjct: 220 --GSEANPMLQRVYGAAFATKEDLKAYQTRLEEAAKR 254


>gi|320156122|ref|YP_004188501.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
 gi|319931434|gb|ADV86298.1| threonyl-tRNA synthetase [Vibrio vulnificus MO6-24/O]
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 40/202 (19%)

Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
           GQ  D    I +   L+I   + + +G+ +                              
Sbjct: 42  GQRVDACDLIEEDASLEIITTKDEVDGLEIV----------------------------- 72

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I  +G  +D+   + +T  +L+ IE  +  +   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-NGFYYDIDLEESLTQEDLEKIEARMKALAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVIKKKVSWQEARDAFEAR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 190 NMSFCQHFTLL---NVAGAYWR 208


>gi|73662391|ref|YP_301172.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761534|sp|Q49YB4|SYT_STAS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72494906|dbj|BAE18227.1| threonyl-tRNA synthetase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 645

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G  V      +   G  +D    + I+S + + IE  +  I  
Sbjct: 73  LRHSTAHLMAQALKRLYGE-VHFGVGPVIEGGFYYDFDMEESISSDDFEKIEKTMKQIAN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N P+  ++++R +A A  +       Y   +     E E+  +++      LC G HV 
Sbjct: 132 ENYPIERKVVSRNEAKAFFS----DDPYKQELIDAIPEDENVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|212638370|ref|YP_002314890.1| threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
 gi|226701399|sp|B7GGN9|SYT_ANOFW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212559850|gb|ACJ32905.1| Threonyl-tRNA synthetase [Anoxybacillus flavithermus WK1]
          Length = 643

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +    V      +  +G  +D+    PIT+ +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAVKRLY-KDVKLGVGPVIENGFYYDIDVDVPITAEDLPKIEQEMKKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL +V + ++RE+AI       +G      +     E E   ++       LC G HV 
Sbjct: 133 ENLDIVRKEVSREEAIRRYE--EIGDPLKIELINDIPEGEVVSIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I    ++S   +     R
Sbjct: 191 STGKIKEFKLLS---VAGAYWR 209


>gi|127512960|ref|YP_001094157.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
 gi|166225499|sp|A3QEK0|SYT_SHELP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126638255|gb|ABO23898.1| threonyl-tRNA synthetase [Shewanella loihica PV-4]
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV     +T  ++  +E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDVDLDHKLTEEDVAELEKRMLALAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV R+++ ++A  +  +   G  Y   +   ++  +D          + +C G HV
Sbjct: 130 TNYDVVKRVVSWQEARDTFESR--GESYKMAILDENISKDDQPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMKFCHHFKLMS---VAGAYWR 207


>gi|291545263|emb|CBL18372.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus sp.
           18P13]
          Length = 646

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 21/178 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H+L  A+  +        G  I  +G  +D    KP T+ EL  IE  +  I+
Sbjct: 70  AFWHTASHILAQAVKRLYPEAKLAIGPAID-NGFYYDFDVEKPFTADELVKIEAEMKQIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR------VRVVSVEYEDGGVHSSALCGGT 697
            + +P+    +   +A+       +G  Y          +   + +   G  +  LC G 
Sbjct: 129 KEGIPLEQFELPPAEALKK--LEEMGEPYKVELCSEHAGKGEPISFYKQGDFTD-LCAGP 185

Query: 698 HVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
           H+ +T  +    ++S +            + RI      +A       +  LK L   
Sbjct: 186 HLMTTAPVKAFKLLSCTGAYWRGSEKNKMLSRIYGTAYPKA----AELEAYLKQLEEA 239


>gi|118602649|ref|YP_903864.1| threonyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166225495|sp|A1AWT6|SYT_RUTMC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118567588|gb|ABL02393.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 632

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 22/196 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A   +        G  I  +G  +D  +    + ++L  IE N++ ++ 
Sbjct: 71  IRHSTAHLLAQATQMLYPKAQVTIGPVID-NGFYYDFVYKDGFSESDLAKIEKNMHKLVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           QNL +    M+R +AI        G  Y   +       +   ++       LC G HV 
Sbjct: 130 QNLKIERFEMSRNEAIQFFKDK--GEYYKTEIIESIPAGQTLSLYKQGNFIDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            T ++    ++              + G  A       +E L+ +      ++ ++   +
Sbjct: 188 LTAKLKAFKLMK-------------LAG--AYWRGDSNNEMLQRVYGTAWATKQDLEEHL 232

Query: 761 EEIWEEYRKLQLIHAK 776
             + E  R+      K
Sbjct: 233 HRLEEASRRDHRKIGK 248


>gi|89100404|ref|ZP_01173268.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
 gi|89084923|gb|EAR64060.1| threonyl-tRNA synthetase [Bacillus sp. NRRL B-14911]
          Length = 234

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I   G  +DV   + +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKRLHKGAKFGVGPVI-EGGFYYDVDLEESLTPEDLPLIEKEMAKIVN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N+ V  + ++RE+A+       +G +Y   +     E E   ++       LC G HV 
Sbjct: 133 ENIDVHRKAVSREEAVEFF--KEIGDEYKLELIEAIPEGETVTLYEQGDFTDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I    ++S   I     R
Sbjct: 191 STGKIKEFKLLS---IAGAYWR 209


>gi|56966069|pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
           Synthetase
 gi|56966071|pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
           Synthetase Complexed With Serine
 gi|56966072|pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
           Synthetase Complexed With An Analog Of Seryladenylate
 gi|56966073|pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
           Synthetase Complexed With Seryl-3'-Aminoadenosine
          Length = 224

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 130 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESS 715
            +        ++  + 
Sbjct: 188 PNMRFCHHFKLMKTAG 203


>gi|301167107|emb|CBW26686.1| threonyl-tRNA synthetase [Bacteriovorax marinus SJ]
          Length = 584

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 15/147 (10%)

Query: 584 SINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +I HS  HL+  A+S +    H+      +   G  +DV     +   +L+ IE  + ++
Sbjct: 8   TIRHSTAHLMAQAISRVFPDTHIQFGIGPVIEHGFYYDVDMDHRLVDEDLEKIEAEMQNL 67

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-------ALCG 695
           I +NL +  ++M+R +A+          K ++  + +   +ED    S         LC 
Sbjct: 68  IKENLSIERKVMSRTEAL-----DFFKDKNDELKQDLINSFEDDAEISCYQQGEFIDLCR 122

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G HV STG++         +I     R
Sbjct: 123 GPHVESTGQLPKF--FKLLNIAGAYWR 147


>gi|153827549|ref|ZP_01980216.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|153829051|ref|ZP_01981718.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|229514759|ref|ZP_04404220.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|229522960|ref|ZP_04412374.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229526102|ref|ZP_04415506.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229527753|ref|ZP_04417144.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|254284959|ref|ZP_04959925.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|148875480|gb|EDL73615.1| threonyl-tRNA synthetase [Vibrio cholerae 623-39]
 gi|149738482|gb|EDM52878.1| threonyl-tRNA synthetase [Vibrio cholerae MZO-2]
 gi|150424962|gb|EDN16739.1| threonyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|229334115|gb|EEN99600.1| threonyl-tRNA synthetase [Vibrio cholerae 12129(1)]
 gi|229336260|gb|EEO01278.1| threonyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229340177|gb|EEO05185.1| threonyl-tRNA synthetase [Vibrio cholerae TM 11079-80]
 gi|229348739|gb|EEO13697.1| threonyl-tRNA synthetase [Vibrio cholerae TMA 21]
 gi|327485485|gb|AEA79891.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
 gi|327485490|gb|AEA79896.1| Threonyl-tRNA synthetase [Vibrio cholerae LMA3894-4]
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 21/186 (11%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++  V+  A  +  H A +E  I+ T+  +             + HS  HLL HAL  + 
Sbjct: 39  RVNGVRVDACDLIEHDASLE--IITTKDEVDG--------LEIVRHSCAHLLGHALKQLY 88

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +     G  I   G  +D+   + ++  +L+ IE  + ++      VV + ++ ++A  
Sbjct: 89  PNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKTKYAVVKKKVSWQEARD 147

Query: 662 SGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSI 716
           +  +   G  Y   +   +V  +D  G++       +C G HV   G      ++   +I
Sbjct: 148 TFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVPHMGFCQNFKLL---NI 202

Query: 717 RAGIRR 722
                R
Sbjct: 203 AGAYWR 208


>gi|110802298|ref|YP_699583.1| threonyl-tRNA synthetase [Clostridium perfringens SM101]
 gi|123047184|sp|Q0SQM4|SYT_CLOPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110682799|gb|ABG86169.1| threonine--tRNA ligase [Clostridium perfringens SM101]
          Length = 643

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 74/197 (37%), Gaps = 15/197 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + +   +I  G+       +    GI        R I+  + SL +        Q
Sbjct: 15  EAGLSIFEIAQSISQGLA------RNACCGILNGKVEDLRFIVNEDSSLEICTFDSKEGQ 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            + NH+A+H+L  A+  +        G  I  +G  +D    K  ++ +L  +E+ +  I
Sbjct: 69  HAFNHTASHVLAAAVKRLFPQDKLAIGPSID-NGFYYDFDTEKSFSADQLNKLEEEMKKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTH 698
           I +N  +    + R +A+      +    Y   +     E E    +       LC G H
Sbjct: 128 IKENPEIKRFELPRNEALEL----MKDEPYKVELINDLPEGEVISFYQIGDFVDLCAGPH 183

Query: 699 VSSTGEIMLLYIVSESS 715
           + +   I  + ++  + 
Sbjct: 184 LMAVKPIKAVKLLRSTG 200


>gi|37526560|ref|NP_929904.1| threonyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|73919813|sp|Q7N3P6|SYT_PHOLL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|36785991|emb|CAE15043.1| threonyl-tRNA synthetase (threonine--tRNA ligase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 642

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +++ +E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPIID-NGFYYDVDLGRALTQEDIELLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + +N ++A  +  A   G  Y  ++   ++  +D  G+++      +C G HV
Sbjct: 130 KDYDVIKKKVNWQEARDTFVAR--GEDYKVQILDENISRDDRPGLYNHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     +     R
Sbjct: 188 PNMRFCHHFKL---QKVAGAYWR 207


>gi|169334538|ref|ZP_02861731.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259255|gb|EDS73221.1| hypothetical protein ANASTE_00941 [Anaerofustis stercorihominis DSM
           17244]
          Length = 637

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 69/175 (39%), Gaps = 14/175 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H+L  A+  + G  V         +G  +D     PIT  +L+ IE  +  I+
Sbjct: 70  AFWHTTSHILAQAVKRLYGDKVKLAIGPSIDNGFYYDFDIETPITENDLEKIEAEMKKIV 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +NL +   ++ R++AI     A     Y   +     E      +       LC G H+
Sbjct: 130 KENLSIEKFVLPRKEAIGFEKEA--NEDYKVELIEDLPEDSIISFYKQGEFTDLCAGPHL 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +T  +  + ++S +       S +  ++R+  I+  +A   L      L+    
Sbjct: 188 LNTKPVKAIKLLSTTGAYWRGDSNKKMLQRVYGISFPKA-KLLEEYLAMLEEAKK 241


>gi|167746735|ref|ZP_02418862.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
 gi|167653695|gb|EDR97824.1| hypothetical protein ANACAC_01447 [Anaerostipes caccae DSM 14662]
          Length = 644

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 72/204 (35%), Gaps = 23/204 (11%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           + +  H+A+H+L  A+  +        G  I  +G  +D+    P T  +L+ IE  +  
Sbjct: 67  RHAFRHTASHILAQAVKRLYPETKLAIGPSID-NGFYYDMEKDTPFTQDDLEKIEAEMKK 125

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+ + L +      RE+AIA          Y   +     E      +       LC G 
Sbjct: 126 IVKEGLQITCFTKPREEAIAF--MKERNEPYKVELIEDLPEDSVISFYQQGEFIDLCAGP 183

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+ +T  +    + S             + G  A      +++ L  +       +  + 
Sbjct: 184 HLMTTKPVKAFKLTS-------------LAG--AYWRGNEKNQMLTRIYGTAFAKKAELK 228

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL 781
             +  + EE +K       ++L L
Sbjct: 229 DYLT-MMEEAKKRDHRKLGKELGL 251


>gi|268678723|ref|YP_003303154.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616754|gb|ACZ11119.1| threonyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 605

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 18/185 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D   ++ I  A+LK IE  + ++  
Sbjct: 43  IRHSCAHLMAQAIKALYKDAQFFVGPVI-EDGFYYDFRVNEKIGDADLKEIEKKMAELAN 101

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LP+      + +A+   A   L  +   R+    V     G     LC G HV +T  
Sbjct: 102 AKLPIEKIYTTKAEALKHFAHDDLKQEVMLRIPDGEVSIYKQGDF-EDLCRGPHVPNTKY 160

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    ++              + G  A      + E L  +       + ++   V  + 
Sbjct: 161 LRFFKLIK-------------VAG--AYLGGDEKREMLTRIYGIAFADKESLKDYVT-MI 204

Query: 765 EEYRK 769
           EE +K
Sbjct: 205 EEAKK 209


>gi|255659698|ref|ZP_05405107.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260848272|gb|EEX68279.1| threonine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 639

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQ--NGSCITPDGLRFDVTHSKPITSAELK 633
           D   R  L   H+A+H+L  A+  +  +   +   G  I  +G  +D    + +T A+L 
Sbjct: 64  DEDGRWALR--HTASHILAQAVKRLYKAANVRLAIGPAID-NGFYYDFDIDRQLTEADLA 120

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
            IE  +  I+ +NL +  + ++RE+A+        G  Y   +     E E   +++   
Sbjct: 121 DIEKEMKKIVKENLKLERKEVSREEALQFFEEK--GETYKVELINDLPEGEKITMYTQGE 178

Query: 692 --ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              LC G HV        +  +   SI     R
Sbjct: 179 FTDLCAGPHV---VSTGKVKALKLMSIAGAYWR 208


>gi|319649026|ref|ZP_08003235.1| ThrZ protein [Bacillus sp. BT1B_CT2]
 gi|317389020|gb|EFV69838.1| ThrZ protein [Bacillus sp. BT1B_CT2]
          Length = 639

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 10/165 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H++TH+L HA+  +  S VS     +  D   +D+     ++  +L +IE  +  II 
Sbjct: 75  LRHTSTHILAHAVKRLY-SSVSLGIGPVIEDEFFYDLKLEHSLSPEDLLAIEREMEKIIK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY----NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           +N+ +   +++ E+A           K               Y+ G      LC G H+ 
Sbjct: 134 ENIEIKRIVVSYEEAEKLFEENNEPLKLEILRGIPKGQEITLYQQGEFID--LCRGPHLP 191

Query: 701 STGEIMLLYIVSESS-IRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           STG I    +   S     G R+ E +  QR       + + L  
Sbjct: 192 STGFIKAFKLTRVSGAYWRGNRQKEVL--QRVYGVAFKKKDDLNE 234


>gi|167758905|ref|ZP_02431032.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
 gi|167663312|gb|EDS07442.1| hypothetical protein CLOSCI_01251 [Clostridium scindens ATCC 35704]
          Length = 641

 Score = 74.0 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 8/147 (5%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           LT D ++ R  +  H+ +H++  A+  +        G  I  +G  +D+    P  + +L
Sbjct: 59  LTFDSEDGRG-AFWHTTSHIMAQAIKRLYPETKLAIGPSID-NGFYYDLDRETPFVAEDL 116

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
           + IE  +  I+ + LP+      RE+AIA          Y   +     E E+   +   
Sbjct: 117 EKIEAEMKKIVKEALPIERFTKTREEAIAYF--KENDEPYKVELVEDLPEGEEISFYKQG 174

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESS 715
               LC G H+ ST  +    + S + 
Sbjct: 175 EFVDLCAGPHLMSTKAVKAFKLTSLAG 201


>gi|261493242|ref|ZP_05989769.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496515|ref|ZP_05992895.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307718|gb|EEY09041.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311092|gb|EEY12268.1| threonine--tRNA ligase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 643

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 14/171 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+   + +T  +L ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDIDLDRSLTQEDLDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV R ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVVKRPVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           V +        +     +     R ++      R +     +K K LA +L
Sbjct: 187 VPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL 233


>gi|75812508|ref|YP_320127.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
 gi|75705264|gb|ABA24938.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Anabaena
           variabilis ATCC 29413]
          Length = 614

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 40/205 (19%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
           + + + L I H+  H++  A+  +        G  +T +G  +D      IT  +L  IE
Sbjct: 15  HDSDKLLRIRHTCAHIMAMAVKKVFPGTKVATGP-VTENGFYYDFDCPVSITPDDLSKIE 73

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE------------ 684
           D +  II  NLP++   + RE+       A L   Y   +     E E            
Sbjct: 74  DQMRRIIKANLPIIREEVQREE--IRTEIAQLNESYKLEILDRIPEGETITRYFIGSPDT 131

Query: 685 -------------DGGVHSSALCGGTHVSSTGEIML--LYIVSESS-------IRAGIRR 722
                            +   LC G H++ TGEI      +++ +         +A ++R
Sbjct: 132 GKPESSLFITDIQPASNYWWDLCAGPHINFTGEIEPDAFKLLNIAGAYWQGDETKAQLQR 191

Query: 723 IEAI---TGQRARSHLMGQDEKLKS 744
           I  I   T ++ +++L  ++E L+ 
Sbjct: 192 IYGIAWETKEQLQAYLKQREEALRR 216


>gi|52078698|ref|YP_077489.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52784060|ref|YP_089889.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52001909|gb|AAU21851.1| threonyl-tRNA synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346562|gb|AAU39196.1| ThrZ [Bacillus licheniformis ATCC 14580]
          Length = 639

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 10/165 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H++TH+L HA+  +  S VS     +  D   +D+     ++  +L +IE  +  II 
Sbjct: 75  LRHTSTHILAHAVKRLY-SSVSLGIGPVIEDEFFYDLKLEHSLSPEDLLAIEREMEKIIK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY----NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           +N+ +   +++ E+A           K               Y+ G      LC G H+ 
Sbjct: 134 ENIEIKRIVVSYEEAEKLFEENNEPLKLEILRGIPKGQEITLYQQGEFID--LCRGPHLP 191

Query: 701 STGEIMLLYIVSESS-IRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           STG I    +   S     G R+ E +  QR       + + L  
Sbjct: 192 STGFIKAFKLTRVSGAYWRGNRQKEVL--QRVYGVAFKKKDDLNE 234


>gi|239827997|ref|YP_002950621.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
 gi|259516491|sp|C5D639|SYT_GEOSW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239808290|gb|ACS25355.1| threonyl-tRNA synthetase [Geobacillus sp. WCH70]
          Length = 644

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +   +V      +  +G  +D+   + +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKRLY-KNVKLGVGPVIENGFYYDIDMEESLTPEDLPKIEQEMRKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL +V + ++RE+AI       +G      +     E E   ++       LC G HV 
Sbjct: 133 ENLEIVRKEVSREEAIRLYE--EIGDDLKLELINDIPEGETISIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I    ++   +I     R
Sbjct: 191 STGKIKEFKLL---NISGAYWR 209


>gi|157962084|ref|YP_001502118.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
 gi|189083623|sp|A8H4U6|SYT_SHEPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157847084|gb|ABV87583.1| threonyl-tRNA synthetase [Shewanella pealeana ATCC 700345]
          Length = 642

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  ++ ++E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLFPETKMAIGPVID-NGFYYDIDLDHKLTQEDIDALEKRMAELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V  R+++ ++A  +  +   G  Y   +   ++  +             +C G HV
Sbjct: 130 TNYAVDKRVVSWQEARDTFESR--GEVYKMAILDENIPKDSTPALYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMKFCQNFKLMS---VAGAYWR 207


>gi|223984594|ref|ZP_03634721.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
 gi|223963441|gb|EEF67826.1| hypothetical protein HOLDEFILI_02017 [Holdemania filiformis DSM
           12042]
          Length = 590

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 17/182 (9%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI-TSAELKSI 635
            ++     +NHS  HLL  A+  +        G  IT DG  +D+     +    +L  I
Sbjct: 15  KEDEHLHVLNHSCAHLLAQAVKHLYPHAKFWVGPVIT-DGFYYDIDLGDDVLHEEDLAKI 73

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSA 692
           E  +  I      +V   +++ +A+              + D    V   Y  G      
Sbjct: 74  EKEMKKIAKDGKRIVRHEISKAEALEMFKDDPYKLDLIGHMDEDDTVISCYSQGDFTD-- 131

Query: 693 LCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT---GQRARSHLMGQDEKL 742
           LC G HV S  E+    ++  S            ++R+  I     +  +++L   +E  
Sbjct: 132 LCRGPHVESVKELKHFKLLKVSGAYWKGDANNKMLQRVYGICFDTDEEVQNYLNFLEEAK 191

Query: 743 KS 744
           K 
Sbjct: 192 KR 193


>gi|126650283|ref|ZP_01722511.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
 gi|126592933|gb|EAZ86915.1| threonyl-tRNA synthetase [Bacillus sp. B14905]
          Length = 637

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 12/201 (5%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           + +   Q    G  + +  +    +++KKA    V+  IV+      E + +   D  ++
Sbjct: 10  FPDGQQQAFTKGVTLTEIAQAIRPELRKKAVAGSVNGTIVDLTRPIMEDAQITLYDASSK 69

Query: 581 RQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
             +  I HS  HLL  A+  +   H       +  +G  +D+  +  +  ++L+ IE  +
Sbjct: 70  EGIEVIRHSTAHLLAQAVKRLYP-HAQFGVGPVIENGFYYDIDIADTLALSDLQQIEKTM 128

Query: 640 NDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
             I+ +N+ +  R ++R +A    A       LL +   D    +   YE G  +   LC
Sbjct: 129 KQIVRENVQIKRREVSRNEAKELFAHDALKLELLESIPADETVTI---YEQGEFYD--LC 183

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G+HV STG++    ++  S 
Sbjct: 184 RGSHVPSTGKLQHFQLMHVSG 204


>gi|239993779|ref|ZP_04714303.1| threonyl-tRNA synthetase [Alteromonas macleodii ATCC 27126]
          Length = 638

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L  +E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDMEESLTQEDLAKLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV   ++  +A  +  A   G  Y   +   ++  +D          + +C G HV
Sbjct: 130 TNYDVVKNKVSWREARDAFEAR--GESYKMEILDENISKDDRPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++    +     R
Sbjct: 188 PNMKFCHHFKLMK---VAGAYWR 207


>gi|219871154|ref|YP_002475529.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
 gi|254783524|sp|B8F5H9|SYT_HAEPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219691358|gb|ACL32581.1| threonyl-tRNA synthetase [Haemophilus parasuis SH0165]
          Length = 643

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+   + +T  +L ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDIDLDRSLTQEDLDALEARMLELAK 129

Query: 645 QNLPVVTRIMNREDAI-------ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            N  VV + ++ ++A         S   A+L    +   R     +E+       +C G 
Sbjct: 130 TNYDVVKKRVSWQEARDTFESRGESYKMAILDENISKDDRPALYHHEE----YIDMCRGP 185

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           HV +        +     +     R ++      R +     +K K LA +L
Sbjct: 186 HVPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLADYL 233


>gi|218961058|ref|YP_001740833.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
 gi|167729715|emb|CAO80627.1| threonyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans]
          Length = 633

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 17/195 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + T+ ++V+   +  + +    HS  HL+  A+  +        G  I   G  +D   
Sbjct: 50  PIDTDATVVIHTFHTEKGKEVYWHSTAHLMAQAVKQLFPEVKIAIGPAI-EQGFYYDFDR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L+ IE  + ++  Q LP     +++E+AI     + +   Y   +     E 
Sbjct: 109 DEPFTEEDLQKIEAKMQELSTQALPYYRTELSKEEAIKLF--SEMNETYKLELLEDIPEG 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAI---TGQ 729
           E    +       LC G H+  TG+I  + ++  S            ++RI  I   T +
Sbjct: 167 EIISSYRQGDFIDLCRGPHLPDTGKIKAIKLLRTSGAYWRGDEKNKMLKRIYGISFPTEK 226

Query: 730 RARSHLMGQDEKLKS 744
               +L   +E  K 
Sbjct: 227 ELTDYLHFLEEASKR 241


>gi|228941754|ref|ZP_04104301.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974678|ref|ZP_04135244.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981272|ref|ZP_04141572.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228778472|gb|EEM26739.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228785081|gb|EEM33094.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817966|gb|EEM64044.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326942359|gb|AEA18255.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 645

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  H+L  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHVLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|194017903|ref|ZP_03056511.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
 gi|194010369|gb|EDW19943.1| threonyl-tRNA synthetase [Bacillus pumilus ATCC 7061]
          Length = 642

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 14/201 (6%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AG  + D    I   +R      +K   G      +     L ++  L +          
Sbjct: 20  AGTTVADIASYISPSLR------KKAVAGKINEQMVDVSHQLESDARLSIVTLDSKEGLE 73

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS+ H+L  A+  +   +V+     +  +G  +D+  ++ ++  +L +IE  + +II
Sbjct: 74  VLRHSSAHVLAQAVKRLY-DNVTLGIGPVIENGFYYDMKLNQTLSVEDLAAIEKEMENII 132

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVVSVEYEDGGVHSSALCGGTHVSS 701
            +N  +  + ++ E+A +  A          R         Y+ G      LC G H+ S
Sbjct: 133 NENHHIQRKEISYEEAESMFAHDPYKLDILKRLPSEEAITVYQQGEFID--LCRGPHLPS 190

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG +    +     +     R
Sbjct: 191 TGFVKSFKLT---RVAGAYWR 208


>gi|91793061|ref|YP_562712.1| threonyl-tRNA synthetase [Shewanella denitrificans OS217]
 gi|123060978|sp|Q12NI7|SYT_SHEDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|91715063|gb|ABE54989.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           denitrificans OS217]
          Length = 642

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T+ +++++E  + D+  
Sbjct: 71  LRHSCAHLLGHAVKQMWPEAKMAIGPVID-NGFYYDIDLDHKLTAEDIEALEKRMMDLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV R+++  +A    A +  G  Y   +   ++  +           + +C G HV
Sbjct: 130 TNYDVVKRVVSWHEA--RDAFSERGEVYKIAILDENISKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMRFCQNFKLMS---VAGAYWR 207


>gi|307945488|ref|ZP_07660824.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
 gi|307771361|gb|EFO30586.1| threonyl-tRNA synthetase [Roseibium sp. TrichSKD4]
          Length = 656

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 18/155 (11%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-------EL 632
           R    I H A H+L  A+  +        G  I  +G  +D     P T         +L
Sbjct: 66  RAVELIRHDAAHVLAEAVQELWPGTQVTIGPVI-ENGFYYDFKRVHPDTKENWPFATDDL 124

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
           + IE  + +II +N P    + +RE+A      A +G  Y   +     E +D  ++   
Sbjct: 125 EVIEKKMREIIQRNQPFTKELWSREEAKK--VFAEMGEDYKVELVDAIPEDQDIKIYKQG 182

Query: 692 ---ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
               LC G H+ +TG I     ++    +     R
Sbjct: 183 DWFDLCRGPHMDATGRIGTAFKLMK---VAGAYWR 214


>gi|283835092|ref|ZP_06354833.1| alanyl-tRNA synthetase-related protein [Citrobacter youngae ATCC
           29220]
 gi|291069386|gb|EFE07495.1| alanyl-tRNA synthetase-related protein [Citrobacter youngae ATCC
           29220]
          Length = 210

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 75/217 (34%), Gaps = 41/217 (18%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A    +  VV D+T F+ + GGQ  D G    +     +  V  + + +    A      
Sbjct: 23  AEPDGRYAVVLDRTLFHPQGGGQPADAGWIDDE----PVETVLARGDDVLHIVAK----P 74

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN--GSCITPDGLRFDVT 622
           L   + + L +D   R+  +  HSA HL+  A     G+        +   P+  R    
Sbjct: 75  LLPGI-VNLRVDAALRQLHARLHSAGHLIGLA-----GTAFGWRPVKAHHWPNEGRITFA 128

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             +  T  +  S+++ +N   A NL       +                      +  V 
Sbjct: 129 AGENGTLPDTLSLQEKINAWQADNLSRQVTFTD---------------------GLRQVG 167

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           +     +    CGGTHV+   EI  + I     ++ G
Sbjct: 168 FGHLLAY---PCGGTHVAHLSEIGPVTITQV-KMKKG 200


>gi|188025947|ref|ZP_02960307.2| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
 gi|188021023|gb|EDU59063.1| hypothetical protein PROSTU_02247 [Providencia stuartii ATCC 25827]
          Length = 653

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+     +T  +L+ +E  + ++  
Sbjct: 82  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDIDLDYALTQEDLEKLEKRMLELAK 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  V+ + ++  +A  +  A   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 141 TDYDVIKKRVSWAEARETFVAR--GEDYKVEILDQNISQDDRPGLYHHQEYIDMCRGPHV 198

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     +     R
Sbjct: 199 PNMRFCHHFKL---QKVAGAYWR 218


>gi|300863511|ref|ZP_07108463.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
 gi|300338467|emb|CBN53605.1| threonyl-tRNA synthetase [Oscillatoria sp. PCC 6506]
          Length = 608

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +    +   G  I  +G  +D    +  T  +LKSI+  +  II 
Sbjct: 30  IRHTTSHVMAMAVQKLFPKALVTIGPWI-ENGFYYDFDIPEAFTEKDLKSIKKEMIKIIN 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGVHSSALCGGTHVSS 701
           + LP++   ++RE+A        +   Y   +       +     G     LC G H+ +
Sbjct: 89  RKLPLIREEVSREEAERR--IKEINEPYKLEILEGLTEPITIYHLGDEWWDLCAGPHLEN 146

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           T E+     +   S+     R
Sbjct: 147 TSELNP-KAIELESVAGAYWR 166


>gi|291531005|emb|CBK96590.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum 70/3]
          Length = 639

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ ++ +  H+A+H+L  A+  +        G  I  +G  +D     P    +
Sbjct: 59  ILTFDDEDGKK-AFRHTASHILAQAVKRLYPEVKLAIGPAID-NGFYYDFDKDTPFMPED 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS------GAAALLGTKYNDRVRVVSVEYED 685
           L++IE  +  I+ ++L +    M   DAI             L  ++  +   +S  Y+ 
Sbjct: 117 LEAIEAEMKKIVKEDLKLEQFEMAPADAIKYLKEIDEPYKVELCEEHAGKNEPISF-YKQ 175

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRA---RSHL 735
           G      LC G H+ STG +    + S +            + RI A    +A    ++L
Sbjct: 176 GEFTD--LCAGPHLMSTGYVKAFKLTSCTGAYWRGSEKNKMLSRIYATAFPKASELEAYL 233

Query: 736 MGQDEKLKS 744
              +E  K 
Sbjct: 234 NMIEEAKKR 242


>gi|218899729|ref|YP_002448140.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228903093|ref|ZP_04067229.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228910399|ref|ZP_04074214.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|218543438|gb|ACK95832.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|228849165|gb|EEM94004.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 200]
 gi|228856502|gb|EEN01026.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 645

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|229019800|ref|ZP_04176603.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|229026025|ref|ZP_04182408.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228735241|gb|EEL85853.1| Threonyl-tRNA synthetase [Bacillus cereus AH1272]
 gi|228741525|gb|EEL91722.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 645

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVITIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|229099037|ref|ZP_04229971.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
 gi|229118067|ref|ZP_04247426.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228665290|gb|EEL20773.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-3]
 gi|228684265|gb|EEL38209.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-29]
          Length = 645

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|167749880|ref|ZP_02422007.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
 gi|167657192|gb|EDS01322.1| hypothetical protein EUBSIR_00848 [Eubacterium siraeum DSM 15702]
          Length = 639

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ ++ +  H+A+H+L  A+  +        G  I  +G  +D     P    +
Sbjct: 59  ILTFDDEDGKK-AFRHTASHILAQAVKRLYPEVKLAIGPAID-NGFYYDFDKDTPFMPED 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS------GAAALLGTKYNDRVRVVSVEYED 685
           L++IE  +  I+ ++L +    M   DAI             L  ++  +   +S  Y+ 
Sbjct: 117 LEAIEAEMKKIVKEDLKLEQFEMAPADAIKYLKEIDEPYKVELCEEHAGKNEPISF-YKQ 175

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRA---RSHL 735
           G      LC G H+ STG +    + S +            + RI A    +A    ++L
Sbjct: 176 GEFTD--LCAGPHLMSTGYVKAFKLTSCTGAYWRGSEKNKMLSRIYATAFPKASELEAYL 233

Query: 736 MGQDEKLKS 744
              +E  K 
Sbjct: 234 NMIEEAKKR 242


>gi|153835364|ref|ZP_01988031.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
 gi|148868112|gb|EDL67276.1| threonyl-tRNA synthetase [Vibrio harveyi HY01]
          Length = 642

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQDDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           + G      ++   ++     R
Sbjct: 190 NMGFCQHFTLL---NVAGAYWR 208


>gi|304319895|ref|YP_003853538.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
 gi|303298798|gb|ADM08397.1| Threonyl-tRNA synthetase [Parvularcula bermudensis HTCC2503]
          Length = 657

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 18/213 (8%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K          +     ++++ ++ +           I H A HLL  A+  +      
Sbjct: 33  KKALAVKVNGTVVDLWDPIKSDAAVEIVTRDSEEGLDLIRHDAAHLLAQAVQALFPDTQV 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I  DG  +D     P ++ +  +IE  +  ++  +L     +++RE+A     A 
Sbjct: 93  TIGPVI-EDGFFYDFARKTPFSTEDFDAIERKMAALVDADLETRKEVVSREEAARLFEAQ 151

Query: 667 LLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVSSTGEIM-LLYIVSESS--IRAG 719
             G  Y   +       E+  ++       LC G H+ ST  I     ++  +    R  
Sbjct: 152 --GEHYKAEIVRDLPTDEEVKIYHHGDWYDLCRGPHLPSTKHIGKAFKLLKLAGAYWRGD 209

Query: 720 IR-----RIE--AITGQRARS-HLMGQDEKLKS 744
            R     RI   A   ++A   +L   +E  K 
Sbjct: 210 HRNEVLHRIYGTAWANEKALKAYLTRLEEAEKR 242


>gi|206974097|ref|ZP_03235015.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217959885|ref|YP_002338441.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|229139078|ref|ZP_04267655.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
 gi|206748253|gb|EDZ59642.1| threonyl-tRNA synthetase [Bacillus cereus H3081.97]
 gi|217066290|gb|ACJ80540.1| threonyl-tRNA synthetase [Bacillus cereus AH187]
 gi|228644433|gb|EEL00688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST26]
          Length = 639

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIVTIDSDEGVEIAR-HSAAHILAQAIKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLREIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|118580723|ref|YP_901973.1| threonyl-tRNA synthetase [Pelobacter propionicus DSM 2379]
 gi|166225474|sp|A1ARE5|SYT_PELPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118503433|gb|ABK99915.1| Ser-tRNA(Thr) hydrolase [Pelobacter propionicus DSM 2379]
          Length = 636

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 23/210 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+ +  + +  +        I HSA HL+  A+  +        G  I   G  +D   
Sbjct: 52  ELKDDSRVEIITEKSPEALTVIRHSAAHLMAQAVKELFPQAKVTIGPAI-ESGFYYDFDM 110

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P T  +L+ IE  + ++ A N  +  R+++  +A++    + +G  Y   +    +  
Sbjct: 111 DAPFTPEDLERIEARMAELAAANQKIERRVLSSSEAVSLF--SGMGENYKVELIN-DLAA 167

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           E   V+S      LC G H+ ST  I    ++S   I     R               ++
Sbjct: 168 ETVSVYSQGDFADLCRGPHLPSTSRIKAFKLLS---IAGAYWR------------GDEKN 212

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             L+ +       +  +   +  + E  R+
Sbjct: 213 RMLQRIYGTAFADKKELEAYLHRLEESKRR 242


>gi|145612117|ref|XP_362520.2| hypothetical protein MGG_08103 [Magnaporthe oryzae 70-15]
 gi|145019347|gb|EDK03575.1| hypothetical protein MGG_08103 [Magnaporthe oryzae 70-15]
          Length = 303

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 84/260 (32%), Gaps = 34/260 (13%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC------AIGDGIRLQITD 545
           V  + ++   + +  +     ++   T F+ + GGQ  D G              +    
Sbjct: 43  VAKLPEEDRTLYKGDATSLYVLITTSTIFHPQGGGQPSDVGTVALASSLETAIFNVDSAR 102

Query: 546 VQKKAEGIFVHHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                 G+ +H    +      + +   L+ T+D + R   S  H+A H+L  A  T+L 
Sbjct: 103 TSASNPGLVLHFGTFQGEAGASIESGSVLIQTVDEKTRHLYSRLHTAGHVLGTATRTLLE 162

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQNLPVVTRIMNREDAIA 661
             +                   K +   + KS I+ +V+D++ ++  V      + D   
Sbjct: 163 DKIEGFDELKASHFPDSAGCEFKGVIEGKWKSDIQQSVDDLVDKDAEVRIEWWTKSDFRE 222

Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHS----------------------SALCGGTHV 699
                LL +  ++    + +  +  G                            CGGTHV
Sbjct: 223 RKLERLLPS--DEVWHAIGIYVDQDGHDVPSEDVIDDEKTRIRVVNIVGSEVYPCGGTHV 280

Query: 700 SSTGEIMLLYIVSESSIRAG 719
            +T     + +      + G
Sbjct: 281 PTTKACGKVTVRKIDISQKG 300


>gi|212635267|ref|YP_002311792.1| threonyl-tRNA synthetase [Shewanella piezotolerans WP3]
 gi|226701407|sp|B8CME8|SYT_SHEPW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212556751|gb|ACJ29205.1| Threonyl-tRNA synthetase, class IIa [Shewanella piezotolerans WP3]
          Length = 642

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA   +        G  I  +G  +D+     +T  ++ +++  +  +  
Sbjct: 71  LRHSCAHLLGHAFKQLWPEAKMAIGPVID-NGFYYDIDLDHKLTQEDIDALQKRMTQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V  R+++ ++A  +  A   G  Y   +   ++  +             +C G HV
Sbjct: 130 TNYAVDKRVVSWQEARDTFEAR--GESYKIEILDENISKDATPALYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMKFCQNFKLMS---VAGAYWR 207


>gi|225864350|ref|YP_002749728.1| threonyl-tRNA synthetase [Bacillus cereus 03BB102]
 gi|225785860|gb|ACO26077.1| threonine--tRNA ligase [Bacillus cereus 03BB102]
          Length = 639

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDFPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|220931402|ref|YP_002508310.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
 gi|219992712|gb|ACL69315.1| Threonyl-tRNA synthetase [Halothermothrix orenii H 168]
          Length = 646

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 89/214 (41%), Gaps = 25/214 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++TID +    +   H+  H+L  A+  +  +     G  I  +G  +D    +  + ++
Sbjct: 61  IVTIDSEEGLDI-YRHTTAHILAQAVKRLYKNVKLGIGPTI-ENGFYYDFDVEESFSPSD 118

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  +  II ++LP+   +++R++A+        G  Y   + +  +E +   ++  
Sbjct: 119 LEKIEKEMEKIIKEDLPIKKEMVSRDEALK--LMKEKGEIYKVEL-IEELEDDYVSLYHQ 175

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                LC G H+ STG++    +++     AG           A       ++ L+ +  
Sbjct: 176 GEFIDLCRGPHLPSTGKVKAFKLLN----AAG-----------AYWRGDENNKMLQRIYG 220

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                +  +   + ++ EE +K       R+L L
Sbjct: 221 TAFQKKKQLEEHL-KMLEEAKKRDHNKLGRELDL 253


>gi|300023294|ref|YP_003755905.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525115|gb|ADJ23584.1| threonyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 650

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+ ++        G  I  +G  +D    +P    ++  IE  + +IIA
Sbjct: 73  IRHDAAHVMAEAVQSLWPGTQVTIGPVID-NGFFYDFAKQQPFEPEDIPKIEKKMGEIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N        +R+DA         G  +   +       ED  ++       LC G H++
Sbjct: 132 KNAAFTKEFWSRDDAKKFFRDK--GEVFKIELVDAIPAGEDLKIYKQGEWLDLCRGPHMT 189

Query: 701 STGEIM-LLYIVSESSIRAGIR---------RIE---AITGQRARSHLMGQDEKLKS 744
           STG+I     ++  +   A  R         RI      T    +++L   +E  K 
Sbjct: 190 STGQIGKAFKLMKFAG--AYWRGDSNNPQLQRIYGTAFATEDELKAYLHQLEEAEKR 244


>gi|167623946|ref|YP_001674240.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
 gi|189083622|sp|B0TT20|SYT_SHEHH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167353968|gb|ABZ76581.1| threonyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 642

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  ++ ++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQLFPETKMAIGPVID-NGFYYDIDLDHKLTQEDIDALEKRMAALAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V  R+++ ++A  +  A   G  Y   +   ++  +             +C G HV
Sbjct: 130 TNYAVDKRVVSWQEARDTFEAR--GEDYKMAILDENIPKDSTPALYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMKFCQNFKLMS---VAGAYWR 207


>gi|167422237|ref|ZP_02313990.1| threonyl-tRNA synthetase (Threonine--tRNA ligase)(ThrRS) [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|166958743|gb|EDR55764.1| threonyl-tRNA synthetase (Threonine--tRNA ligase)(ThrRS) [Yersinia
           pestis biovar Orientalis str. MG05-1020]
          Length = 219

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV     +T  +L  +E  ++++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPDTKMAIGPVID-NGFYYDVDIEHTLTQEDLALLEKRMHELAD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  + AA   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDTFAAR--GEDYKVAILDENISRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESS 715
            +        +   S 
Sbjct: 188 PNMRFCHHFKLQKTSG 203


>gi|291557532|emb|CBL34649.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Eubacterium
           siraeum V10Sc8a]
          Length = 639

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D ++ ++ +  H+A+H+L  A+  +        G  I  +G  +D     P    +
Sbjct: 59  ILTFDDEDGKK-AFRHTASHILAQAVKRLYPEVKLAIGPAID-NGFYYDFDKDTPFMPED 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIAS------GAAALLGTKYNDRVRVVSVEYED 685
           L++IE  +  I+ ++L +    M   DAI             L  ++  +   +S  Y+ 
Sbjct: 117 LEAIEAEMKKIVKEDLKLEQFEMAPADAIKYLKEIDEPYKVELCEEHAGKNEPISF-YKQ 175

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRA---RSHL 735
           G      LC G H+ STG +    + S +            + RI A    +A    ++L
Sbjct: 176 GEFTD--LCAGPHLMSTGYVKAFKLTSCTGAYWRGSEKNKMLSRIYATAFPKASELEAYL 233

Query: 736 MGQDEKLKS 744
              +E  K 
Sbjct: 234 NMIEEAKKR 242


>gi|261349361|gb|ACX71240.1| alanyl-tRNA synthetase [Streptococcus suis]
          Length = 97

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIH--AK 776
            RRI A+TG+ A      Q++ LK +A+ +K  Q   V  +VE + ++ R LQ  +   K
Sbjct: 1   TRRIVAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPNKVESLAQQVRDLQKENTALK 60

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810
            K            + D N + +I S+V   D+  L+
Sbjct: 61  EKATAAAAGDVFKDVKDANGIRYIASQVQVSDAGALR 97


>gi|229091361|ref|ZP_04222576.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
 gi|228691990|gb|EEL45732.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-42]
          Length = 639

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGNVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|220926910|ref|YP_002502212.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
 gi|219951517|gb|ACL61909.1| threonyl-tRNA synthetase [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+ ++        G  I  +G  +D     P T  +  +IE  +
Sbjct: 66  RALELIRHDCAHVLAEAVQSLWPETQVTIGPVI-ENGFYYDFYRETPFTPDDFAAIEARM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++ P    +  R+D  A  A    G  +   +       ED  ++       LC 
Sbjct: 125 REIIARDAPFTKEVWARDDVRALFADK--GESFKVELVDAIPPGEDLKIYRQGEWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG+I     ++    +     R
Sbjct: 183 GPHMTSTGKIGAAFKLMK---VAGAYWR 207


>gi|52425108|ref|YP_088245.1| threonyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E]
 gi|73919804|sp|Q65TQ0|SYT_MANSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52307160|gb|AAU37660.1| ThrS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 643

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 13/180 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV     ++  +L ++E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLEHSLSQEDLDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV R ++ ++A  +      G  Y   +   ++  +D            +C G HV
Sbjct: 130 TNYDVVKRRVSWQEARDTFEKR--GEPYKMAILDENIAKDDHPALYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        +     +     R ++      R +     +K K L  +L         R
Sbjct: 188 PNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLNEYL-TRLEEAAKR 242


>gi|320529200|ref|ZP_08030292.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
 gi|320138830|gb|EFW30720.1| threonyl-tRNA synthetase [Selenomonas artemidis F0399]
          Length = 639

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 582 QLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +L++ H+ +H++  A+  +    +V         +G  +D    + +T A+L+ IE  + 
Sbjct: 68  RLALRHTCSHIMAQAVKRLYKDCNVQLAIGPAIENGFYYDFDMDRQLTDADLRDIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ +NL +  R + R +AIA       G  Y   +     E      ++      LC G
Sbjct: 128 KIVKENLKLERREIPRSEAIAYF--REKGENYKVELIEDLPEDVTISTYTQGEFTDLCAG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV        +  +   SI     R
Sbjct: 186 PHV---LSTGKVKALRLQSIAGAYWR 208


>gi|196043419|ref|ZP_03110657.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
 gi|196025728|gb|EDX64397.1| threonyl-tRNA synthetase [Bacillus cereus 03BB108]
          Length = 639

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDFPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|118477787|ref|YP_894938.1| threonyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]
 gi|229184596|ref|ZP_04311798.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
 gi|118417012|gb|ABK85431.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228598913|gb|EEK56531.1| Threonyl-tRNA synthetase [Bacillus cereus BGSC 6E1]
          Length = 639

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDFPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|260656268|pdb|3G98|A Chain A, Crystal Structure Of The C-Ala Domain From Aquifex
           Aeolicus Alanyl-Trna Synthetase
 gi|260656269|pdb|3G98|B Chain B, Crystal Structure Of The C-Ala Domain From Aquifex
           Aeolicus Alanyl-Trna Synthetase
          Length = 111

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 2/108 (1%)

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             + D      +  EV+ +EL+++ D L+++ +  ++  +   K  K + +I V++++ D
Sbjct: 4   ENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVV-FIASRKGDKINFVIGVSKEISD 62

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + NA ++ R   KVL GGGG GR  +AQ GG   +K  +A+  +   L
Sbjct: 63  KVNAKEVIREVGKVLKGGGG-GRADLAQGGGKAPDKFPEAVKLLKEIL 109


>gi|209884754|ref|YP_002288611.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
 gi|209872950|gb|ACI92746.1| threonyl-tRNA synthetase [Oligotropha carboxidovorans OM5]
          Length = 680

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 27/207 (13%)

Query: 558 AIVERGILRTEMSLVLTI---DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
            +V       E    L +   D     +L   H   H+L  A+ T+        G  I  
Sbjct: 66  GVVSDLADPIEQDATLELINRDDPRALELIR-HDCAHVLAEAVQTLWPGTQVTIGPVI-E 123

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           +G  +D   ++P T  +  +IE  + +IIA++ P    +  R+D     A    G  +  
Sbjct: 124 NGFYYDFFRNEPFTPEDFAAIEKKMREIIARDAPFTKEVWTRDDTKKVFADK--GEAFKV 181

Query: 675 RVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR------- 722
            +       +   ++       LC G H++STG+I     ++    +     R       
Sbjct: 182 ELVDAIPADQSIKIYKQGEWFDLCRGPHMTSTGKIGNAFKLMK---VAGAYWRGDSNNPM 238

Query: 723 -----IEAITGQRARSHLMGQDEKLKS 744
                  A   Q+A    + Q E+ + 
Sbjct: 239 LTRIYGTAFANQQALDAYLKQLEEAEK 265


>gi|325478873|gb|EGC81983.1| threonine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 640

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++H++  A+  +        G  I  DG  +D+         +L+ IE  + +I  ++
Sbjct: 73  HTSSHVMAAAIKGLYPDTKFAIGPAID-DGFYYDMELDHRFVPEDLEKIEKKMLEIAKRD 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           L +    ++R++A+          K    ND      +     G   + LC G H+ ST 
Sbjct: 132 LKLERIEISRDEALEMFEKEGQDYKVELINDLAEDELITLYKMGDAFTDLCRGPHLLSTK 191

Query: 704 EIMLLYIVSESSIRAGIR----------RIEAITGQRARSHLMGQDEKLKSLAS 747
           +I  + I    +I               RI  IT ++A   L   +E  K +  
Sbjct: 192 QIKAVKI---KTIAGAYWRGDSDRQMLQRIYGITFEKA-KQLEEYEELQKEIEK 241


>gi|196040031|ref|ZP_03107334.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
 gi|196029290|gb|EDX67894.1| threonine--tRNA ligase [Bacillus cereus NVH0597-99]
          Length = 639

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|225630645|ref|YP_002727436.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
 gi|254783546|sp|C0R403|SYT_WOLWR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225592626|gb|ACN95645.1| threonyl-tRNA synthetase [Wolbachia sp. wRi]
          Length = 633

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +  +     G  I  DG  +D    +  T+ +L +IE  + +I+ 
Sbjct: 69  IRHDAAHIMAQAVKELFPNTQITIGPTIQ-DGFYYDFATGRTFTTDDLTAIEKKMKEIVK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N   V  +  R+ AI     + +G KY   +     E E+  V+       LC G H  
Sbjct: 128 SNHRFVREVWTRKQAIDFF--SDIGEKYKVDIISSIPEGENLTVYRQGDFIDLCRGPHSP 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI---------TGQRARSHLMGQDEKLKSLAS 747
           STG +    ++    +     R +A          T  R +  L    E LK    
Sbjct: 186 STGRVKAFKLMK---VAGAYWRGDAKGPMLQRIYGTAWRNKDELNAYLECLKEAEK 238


>gi|220903768|ref|YP_002479080.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254783519|sp|B8J4E4|SYT_DESDA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219868067|gb|ACL48402.1| threonyl-tRNA synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 647

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 12/174 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I   G  +D    KP +S +  +IE  +  I  
Sbjct: 74  LRHSTAHVMAAAVKQLFPKTRVTIGPSI-ESGFYYDFDVEKPFSSEDFSAIEAEMQRIAN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
              P    +++R +AI    A  +G  Y     +  ++ +   V++      LC G HV 
Sbjct: 133 AREPFTREVLSRAEAIERFKA--MGEDYKVE-IIEGIDADTVSVYTCSGFADLCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            TG      ++S   +     R +      +R +     ++ K+LA++LK  + 
Sbjct: 190 HTGFAKASKLMS---VAGAYWRGDEKNRMLSRIYGTAFADE-KALAAYLKQMEE 239


>gi|168027962|ref|XP_001766498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682407|gb|EDQ68826.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 615

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 10/191 (5%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
           VE         +VL  +  +   + I H+  H+L  A+  +        G  I   G  +
Sbjct: 21  VEIPEDAENKIIVLPTNESSENLVKIRHTTAHVLAMAVQKLFPEAQVTIGPWI-EKGFYY 79

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DR 675
           D    +  T  +LK I+  ++ II++NLP+V   ++RE+A        +   Y     + 
Sbjct: 80  DFDMKEAFTEKDLKKIKKEMDRIISRNLPLVREEVSREEAERR--IKAINEPYKLEILEG 137

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG--QRARS 733
           ++   +     G     LC G HV  TG++     +   S+     R +      QR   
Sbjct: 138 IKSEPITIYRIGEDWWDLCAGPHVERTGQLNK-RAIELESVAGAYWRGDEKNQMLQRVYG 196

Query: 734 HLMGQDEKLKS 744
                +E+LK+
Sbjct: 197 TAWETEEQLKA 207


>gi|114563199|ref|YP_750712.1| threonyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400]
 gi|122299726|sp|Q082E1|SYT_SHEFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|114334492|gb|ABI71874.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Shewanella
           frigidimarina NCIMB 400]
          Length = 642

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +D+     +T  +++++E  +  +  
Sbjct: 71  LRHSCAHLLGHAIKQMWPETKMAIGPVID-NGFYYDIDLDHKLTHEDIEALEKRMLALAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  VV ++++ ++A  +      G +Y   +   ++  +             +C G HV
Sbjct: 130 TNYDVVKKVVSWQEARDAFDGR--GEEYKIAILDENISKDATPALYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMRFCQNFKLMS---VAGAYWR 207


>gi|317969695|ref|ZP_07971085.1| threonyl-tRNA synthetase [Synechococcus sp. CB0205]
          Length = 590

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 27/244 (11%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L I HS +H++  A+  +        G   T +G  +D  +  P T A+LK+I+  + 
Sbjct: 11  QLLRIRHSMSHVMAMAVQRLFPKAQVTIGPW-TENGFYYDFDNPDPFTEADLKAIKKEMI 69

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGT 697
            +I + LP+    ++R +A +   A      Y   +       +     G     LC G 
Sbjct: 70  KLINKKLPLERLEVSRAEAESRIQAQ--NEPYKLEILAGIQEPISLYTLGEDWWDLCAGP 127

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HVS+T E+         S+     R     G    + L             L        
Sbjct: 128 HVSNTKELNA-KAFDLESVAGAYWR-----GDENNAQLQRIYGTAWETPEQLS------- 174

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
                   EY++ Q    +R  +    DL    I D      +        ++ +++ L 
Sbjct: 175 --------EYKRRQEEAKRRDHRRIGTDLDLFSIEDEAGAGLVFWHPRGARMRLLIENLW 226

Query: 818 KKIQ 821
           +++ 
Sbjct: 227 RELH 230


>gi|301303992|ref|ZP_07210110.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Escherichia coli MS 124-1]
 gi|300840789|gb|EFK68549.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Escherichia coli MS 124-1]
          Length = 209

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 51  IRHSCAHLLGHAIKQLWP-HTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           +N  V+ + ++  +A  + A    G  Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KNYDVIKKKVSWHEARETFANR--GESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSESS 715
            +        ++  + 
Sbjct: 168 PNMRFCHHFKLMKTAG 183


>gi|218231087|ref|YP_002367070.1| threonyl-tRNA synthetase [Bacillus cereus B4264]
 gi|218159044|gb|ACK59036.1| threonine--tRNA ligase [Bacillus cereus B4264]
          Length = 640

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNKGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|72381873|ref|YP_291228.1| threonyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|123759915|sp|Q46LV3|SYT_PROMT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72001723|gb|AAZ57525.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Prochlorococcus
           marinus str. NATL2A]
          Length = 641

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 21/208 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  DG  +D+++    T  +L  IE  + +++ 
Sbjct: 71  IRHSFAHLLGHAVKQLYPEAKMAIGPVI-EDGFYYDISYKDTFTPDDLLKIEKRMKELVN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           ++  V   I++ E A         G  +   +     + E   ++       +C G HV 
Sbjct: 130 RDYSVGVEIVSPEKAKEVFTDR--GEIFKLDIVKNIPKNEIIKLYKHQEYIDMCRGPHVP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    ++    +     R     G      L          +  LK      + R+
Sbjct: 188 NTRHLRAFKLMK---VSGAYWR-----GDSNNEMLQRIYGTAWKSSKELK----EYLSRI 235

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           EE   E R  + +  K  L  + E+   
Sbjct: 236 EE--AEKRDHRKLGKKYSLFHSQEEAPG 261


>gi|76801848|ref|YP_326856.1| threonyl-tRNA synthetase [Natronomonas pharaonis DSM 2160]
 gi|121731906|sp|Q3IRE7|SYT_NATPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|76557713|emb|CAI49296.1| threonine--tRNA ligase [Natronomonas pharaonis DSM 2160]
          Length = 642

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 81/224 (36%), Gaps = 21/224 (9%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EIV     G ++E+         E+G  + D    IG G+            G+     +
Sbjct: 3   EIVVTLPDGSELEM---------ESGSTVEDVAYEIGPGLGDD------TVAGVVDGELV 47

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   L  +  LV+  D  +     + HSA H+   AL  +        G   T +G  +
Sbjct: 48  DKAEQLTDDCELVIVTDQSDEYLQVLRHSAAHVFAQALQRLHPEAKLAIGPP-TEEGFYY 106

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRV 678
           DVT    + + +L++IE  +  II  +  +     +RE+A              +     
Sbjct: 107 DVTG-VDLDADDLEAIEAEMETIIEADHDIERAERSREEAFEIYEDNPYKRDILETEAAD 165

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         LC G HV STGEI  + ++   +I A   R
Sbjct: 166 EDPVSFYTQDDWQDLCQGPHVDSTGEIGAVELL---NIAAAYWR 206


>gi|152976959|ref|YP_001376476.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025711|gb|ABS23481.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 643

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 36/229 (15%)

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            I +     ++T+D ++   +   HS  HLL  AL  +    V      +  +G  +D+ 
Sbjct: 53  PIEKDGAISIVTLDSEDGLYILR-HSTAHLLAQALKRLY-KDVKLGIGPVIENGFYYDID 110

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             + IT  +   IE  +  I+ +NL +V   + R +A+          + ND +++  + 
Sbjct: 111 MEEAITVEDFPKIEKEMQKIVNENLEIVRHEVPRAEALRRY------EEINDELKLELIN 164

Query: 683 ----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                     YE G      LC G H+ STG+I +  ++S   +     R          
Sbjct: 165 DLPEDAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR---------- 209

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                 ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 210 --GDSNNKMLQRIYGTAFVKKAELDEHM-RMLEEAKERDHRKLGKELKL 255


>gi|319790149|ref|YP_004151782.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
 gi|317114651|gb|ADU97141.1| threonyl-tRNA synthetase [Thermovibrio ammonificans HB-1]
          Length = 658

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 80/229 (34%), Gaps = 30/229 (13%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560
           +V E   G K+E     T    E  G++  +      G            E I VH  I 
Sbjct: 2   VVIELPDGSKLEFQGPTTV--KEIAGKIAKSLEKNAVGAVFN-------GELIDVHTPIT 52

Query: 561 ERGILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDG 616
           E G +R    +    L I         + HSA HLL  A+  + G++ V       T +G
Sbjct: 53  ESGRIRIITPKDPESLEI---------LRHSAAHLLAKAVKKLYGNNEVKLGIGPATQEG 103

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-- 674
             +D      I+  +L  IE  +  I+    P    +++RE A           K  +  
Sbjct: 104 FYYDFDLPVSISEEDLPKIEAEMEKIVKAKEPFRREVISREKARELFKNDPYKLKLLESI 163

Query: 675 -RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                VS+ +         LC G HV   G+I    ++S   +     R
Sbjct: 164 PEEEEVSIYWLGEDFFD--LCKGPHVEHAGQIKAFKLLS---VAGAYWR 207


>gi|260592148|ref|ZP_05857606.1| alpha-amylase family protein [Prevotella veroralis F0319]
 gi|260535782|gb|EEX18399.1| alpha-amylase family protein [Prevotella veroralis F0319]
          Length = 720

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 13/158 (8%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+ +    H+A HLL+  +  + G+  S N + I     +            E K
Sbjct: 570 VLNTHNKEEFPPAHTAEHLLNQVMVRMFGAERSNN-AHIERKKSKMTFILDHKPNRKEEK 628

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +I D +N +IA++LPV   +++R       +   L    ++ +R+V +     G      
Sbjct: 629 AIVDEMNRLIAEDLPVTFEMVDRNHIPEGVSLDKLPDDASEMLRLVRI-----GDFDVCP 683

Query: 694 CGGTHVSSTGEIMLLYIVS----ESSIRAGIRRIEAIT 727
           C G HV ST +I    ++     ES       RI    
Sbjct: 684 CIGKHVRSTSQIGRFELLGTNWDESKHA---FRIRFKV 718


>gi|307719284|ref|YP_003874816.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
 gi|306533009|gb|ADN02543.1| threonyl-tRNA synthetase [Spirochaeta thermophila DSM 6192]
          Length = 578

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HSA H++  A+  +        G  I   G  +D    + +T  +L+ IE+ +   I
Sbjct: 8   RIRHSAAHIMADAVLRLFPEAKFAIGPAIDT-GFYYDFDLPRSLTPEDLEKIEELMRKTI 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHV 699
            ++LP    +++RE+A            Y   +     E E+  ++       LC G HV
Sbjct: 67  EEDLPFEREVISREEARELFKDQ----PYKLEILEEIPEGEEVSIYRHGTFVDLCRGPHV 122

Query: 700 SSTGEIML--LYIVSESSIRAGIRR 722
             TG+I    + ++S   I     R
Sbjct: 123 ERTGQINPDAVKLLS---IAGAYWR 144


>gi|42781481|ref|NP_978728.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
 gi|42737404|gb|AAS41336.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 10987]
          Length = 640

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSDEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|291537165|emb|CBL10277.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis M50/1]
          Length = 494

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 64/162 (39%), Gaps = 11/162 (6%)

Query: 575 ID-YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAEL 632
           +D  ++ R  ++NHS  H++  A+  +  +     G  +  +G  +D+      +    +
Sbjct: 2   VDFKEDERLNTLNHSCAHVMAQAVKHLYPNAKFWVGPVV-KEGFYYDIDLGDTAVNDDVI 60

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            +IE  +  +  +   +  R +++ +A+             D +   ++   D G  +  
Sbjct: 61  AAIEKEMKKVCKEGKKIYRREISKAEALELFKDDEYKLDLIDGLEDGNISVYDQGDFTD- 119

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIR-AG------IRRIEAIT 727
           LC G HV +T       ++  S +   G      ++RI  + 
Sbjct: 120 LCRGPHVDNTKLCKNFKLIKYSGVYWKGDANNHVMQRIYGVC 161


>gi|212711437|ref|ZP_03319565.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
 gi|212685893|gb|EEB45421.1| hypothetical protein PROVALCAL_02510 [Providencia alcalifaciens DSM
           30120]
          Length = 653

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+     +T  +L  +E  + ++  
Sbjct: 82  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDIDLDYTLTQEDLDKLEKRMLELAK 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  VV + ++  +A  +  +   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 141 TDYDVVKKRVSWAEARETFVSR--GEDYKVEILDQNISQDDRPGLYHHQEYIDMCRGPHV 198

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     +     R  +      R +     +K K LA++L
Sbjct: 199 PNMRFCHHFKL---QKVAGAYWRGNSDNKMLQRIYGTAWADK-KQLAAYL 244


>gi|302386675|ref|YP_003822497.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
 gi|302197303|gb|ADL04874.1| threonyl-tRNA synthetase [Clostridium saccharolyticum WM1]
          Length = 653

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A+H+L  A+  +        G  I  +G  +D       +  +L  IED +  II
Sbjct: 69  AYRHTASHILAQAVKRLYPQAKLAIGPSI-ENGFYYDFDIPS-FSREDLDKIEDEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            + + +    + RE+AI        G  Y   +     E  +   +       LC G H+
Sbjct: 127 KEGVKIERFTLPREEAIKF--MEEKGEPYKVELIQDLPEGAEISFYRQGEFTDLCAGPHL 184

Query: 700 SSTGEIMLLYIVSESS 715
            +T  I    ++S S 
Sbjct: 185 MNTKSIKAYKLISSSG 200


>gi|170290551|ref|YP_001737367.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174631|gb|ACB07684.1| threonyl-tRNA synthetase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 638

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 81/230 (35%), Gaps = 40/230 (17%)

Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKA 550
           VK I+  G  +      + ++V+       AEA G+L D    I D    +++ D     
Sbjct: 2   VKVIMPDGTTLNAEEGKRILDVIPRGIGLIAEASGRLLDLSTVISDDLGEIRVLDFN--- 58

Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610
                                          + +  H+ +H+L  A+  +        G 
Sbjct: 59  ---------------------------SREGREAYWHTTSHILAQAVKRLFKEAKLGIGP 91

Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670
            I            K  +  +L+ IE+ +  I+ +++ +V   M RE+AIA    A  G 
Sbjct: 92  PIEEGFYYEFDLGGKTFSQEDLELIEEEMRRIVEEDIEIVREEMRREEAIALFREA--GE 149

Query: 671 KYN-----DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            Y      +    V   Y  G      LC G H+ STG +  + ++  SS
Sbjct: 150 PYKVELLEEIEEPVVSIYRQGEFFD--LCRGPHLPSTGYVKYMKLLQVSS 197


>gi|240949517|ref|ZP_04753857.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
 gi|240296090|gb|EER46751.1| threonyl-tRNA synthetase [Actinobacillus minor NM305]
          Length = 643

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+   + +T  ++ ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDIDLDRSLTQEDIDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV + ++ ++A  +  +   G  Y   +   ++  +D            +C G HV
Sbjct: 130 TNYDVVKKRVSWQEARDTFESR--GEPYKMAILDENISKDDSPALYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     +     R ++      R +     +K K LA +L
Sbjct: 188 PNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLADYL 233


>gi|229161333|ref|ZP_04289318.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
 gi|228622147|gb|EEK78988.1| Threonyl-tRNA synthetase [Bacillus cereus R309803]
          Length = 639

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 23/215 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G +V
Sbjct: 37  KKAVAGKVNEQLYDLRRNIEENAEVEIVTIDSNEGVEIAR-HSAAHILAQAVKRMYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  +  II++N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMKKIISENINIERVEVSREEAAKLFQE 154

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
              G K    +       E   ++       LC G H+ STG +    + + S   A  R
Sbjct: 155 MNDGLKL--ELLEAIPNEESVTLYKQDEFVDLCRGPHLPSTGYLKAFQLTNVSG--AYWR 210

Query: 722 ---------RIEAIT--GQRAR-SHLMGQDEKLKS 744
                    RI  +    Q+A   +L   +E  K 
Sbjct: 211 GDSNNQVLQRIYGVAFSSQKALEEYLHFVEEAAKR 245


>gi|152989860|ref|YP_001355582.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
 gi|151421721|dbj|BAF69225.1| threonyl-tRNA synthetase [Nitratiruptor sp. SB155-2]
          Length = 613

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  +  +G  +D   S+ I+  +L  IE  + +I  
Sbjct: 43  IRHSTAHLMAQAIKELYPDAKFFVGPVVD-EGFYYDFRTSQKISEEDLPKIEKKMQEIAK 101

Query: 645 QNLPVVTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           + L +    + + +AI       L           V   Y+ G      LC G HV +T 
Sbjct: 102 RKLDITRYEIPKSEAIEKFKEDDLKQEVLKSIPSDVVSIYKQGDFED--LCRGPHVPNTK 159

Query: 704 EIMLLYIVSESS-------IRAGIRRIEAIT 727
            +    +   +         +  + RI  + 
Sbjct: 160 YLKHFKLTRVAGAYLGGDETKEMLTRIYGVA 190


>gi|306820889|ref|ZP_07454509.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551003|gb|EFM38974.1| threonine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 641

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 78/186 (41%), Gaps = 13/186 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H++TH++  A+  +  +     G  +  +G  +D+   + +T  +L+ IE  + +I++++
Sbjct: 73  HTSTHIMAQAVKRLYPNAKLGTGPALD-NGFYYDIDLEEKLTVEDLEKIEKEMKNIVSES 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
           L +V + ++R +AI           Y   +     E     ++       LC G H+ +T
Sbjct: 132 LDIVRKEVSRNEAIEI--MKNRNEDYKIEIINGLPEDATISLYQQGEFIDLCAGPHLPNT 189

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-QDEKLKSLASFLKVSQGNVVGRVE 761
             +    + S   I     R  A    +    L G   EK + L  +LK+ +   +    
Sbjct: 190 KYVKAFKLTS---IAGAYWR--ADANNKQLQRLYGISFEKKRELDEYLKLLEEAKLRDHR 244

Query: 762 EIWEEY 767
           ++ +E 
Sbjct: 245 KLGKEL 250


>gi|206896471|ref|YP_002247167.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
 gi|206739088|gb|ACI18166.1| threonyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265]
          Length = 632

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA+HL+  A+  +        G  I  +G  +D+   + +T A+L  IE+ +  +  
Sbjct: 62  LRHSASHLMAQAVKNLFPGTKLGIGPAI-ENGFYYDMLIPEGLTEADLTRIEEEMVRLSK 120

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++LPV  ++M +EDA     +     K      +  +E +   V+       LC G HV+
Sbjct: 121 ESLPVERQVMTKEDAKKLFQSLNEPFKVE---LIEEIEGDYVTVYRQGEFVDLCRGPHVN 177

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG I    ++S   I     R
Sbjct: 178 NTGLIKHFKLLS---ISGAYWR 196


>gi|295399484|ref|ZP_06809466.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109958|ref|YP_003988274.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978950|gb|EFG54546.1| threonyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215059|gb|ADP73663.1| threonyl-tRNA synthetase [Geobacillus sp. Y4.1MC1]
          Length = 644

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +   +V      +  +G  +D+   + +T  +L  IE  +  I+ 
Sbjct: 74  LRHSTAHLMAQAIKRLY-KNVKLGVGPVIENGFYYDIDMEESLTPEDLPKIEQEMRKIVK 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +NL +V + ++RE+AI       +G      +     E E   ++       LC G HV 
Sbjct: 133 ENLEIVRKEVSREEAIRLYE--EIGDNLKLELINDIPEGETISIYEQGEFFDLCRGVHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG+I    ++   +I     R
Sbjct: 191 STGKIKEFKLL---NISGAYWR 209


>gi|163940157|ref|YP_001645041.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163862354|gb|ABY43413.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 639

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 24/229 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTI-DYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G     +   R  +     + + I D     +++  HSA H+L  A+  I G  V
Sbjct: 37  KKAIAGKVNDQSFDLRRNIEESAKVEIIIMDSDEGIRIAR-HSAAHILAQAVKRIYGD-V 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMKNIINENVKIERVEVSREEAKELF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             +       +       E   ++       LC G H+ STG +    +   S   A  R
Sbjct: 153 QEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG--AYWR 210

Query: 722 ---------RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
                    RI  +    A S     +E L  +    K +   +   +E
Sbjct: 211 GDSNNQVLQRIYGV----AFSSQQKLEEYLHFVEEAAKRNHRELGSELE 255


>gi|260914069|ref|ZP_05920542.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
 gi|260631702|gb|EEX49880.1| threonine-tRNA ligase [Pasteurella dagmatis ATCC 43325]
          Length = 644

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 9/178 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L ++E  + D+  
Sbjct: 71  IRHSCAHLLGHAIKQLFPNVKMAIGPTI-ENGFYYDVDLDRSLTQEDLDALEKRMLDLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            N  VV ++++ ++A  +        K    ++ +                +C G HV +
Sbjct: 130 TNYDVVKKVVSWQEARDTFEQRSEPYKMAILDENIARCDTPALYHHEEYIDMCRGPHVPN 189

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                   ++    +     R ++      R +     +K K L+ +L         R
Sbjct: 190 MRFCHHFKLMK---VAGAYWRGDSKNKMLQRIYGTAWADK-KQLSEYL-TRLEEAAKR 242


>gi|229144961|ref|ZP_04273357.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
 gi|228638483|gb|EEK94917.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST24]
          Length = 640

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 24/229 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEITR-HSAAHILAQAVKRMYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             +  +    +       E   ++       LC G H+ STG +    +   S   A  R
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG--AYWR 210

Query: 722 ---------RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
                    RI  +    A S     +E L  +    K +   +   +E
Sbjct: 211 GDSNNQVLQRIYGV----AYSFQKELEEYLHFVEEATKRNHRKLGNELE 255


>gi|297579610|ref|ZP_06941537.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
 gi|297535256|gb|EFH74090.1| threonyl-tRNA synthetase [Vibrio cholerae RC385]
          Length = 642

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 21/186 (11%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++  V+  A  +  H A +E  I+ T+  +             + HS  HLL HAL  + 
Sbjct: 39  RVNGVRVDACDMIEHDASLE--IITTKDEVDG--------LEIVRHSCAHLLGHALKQLY 88

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +     G  I   G  +D+   + ++  +L+ IE  + ++      VV + ++ ++A  
Sbjct: 89  PNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKTKYAVVKKKVSWQEARD 147

Query: 662 SGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSI 716
           +  +   G  Y   +   +V  +D  G++       +C G HV   G      ++   +I
Sbjct: 148 TFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVPHMGFCQNFKLL---NI 202

Query: 717 RAGIRR 722
                R
Sbjct: 203 AGAYWR 208


>gi|254456038|ref|ZP_05069467.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083040|gb|EDZ60466.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 638

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 21/198 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H   H+L  A+  +        G  I  +G  +D    +  T  +L  IE+ + +I+
Sbjct: 70  TIRHDTAHILAMAVQELFPGTQVTIGPVI-ENGFYYDFARKESFTEDDLIKIENKMKEIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHV 699
            ++      +  R  AIA       G  Y   +     E ED  ++       LC G H+
Sbjct: 129 DRDEITKREVWERNKAIAHFKKK--GEVYKAELIEAIPENEDVSIYFHGDWHDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           SSTG+I        + +     R               ++E L+ +      SQ  +   
Sbjct: 187 SSTGKIG--KYFKLTKVSGAYWR------------GDSKNEMLQRIYGTSWASQKELDEY 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           ++ I E  ++      K 
Sbjct: 233 LKRIEEAEKRDHRKLGKE 250


>gi|302342263|ref|YP_003806792.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
 gi|301638876|gb|ADK84198.1| threonyl-tRNA synthetase [Desulfarculus baarsii DSM 2075]
          Length = 627

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I  +G  +D  + +     +L +IED +  II 
Sbjct: 59  LRHSTAHIMAEAVRALFPGVKVGIGPAI-ENGFYYDFAYERAFAMDDLPAIEDKMRQIIK 117

Query: 645 QNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            N P V     RE+     A        +  D +    V     G     LC G H+ ST
Sbjct: 118 ANTPFVRCEAPREEIRRLFADQGEQFKVELIDDLHDQVVSTYGQGSFVD-LCRGPHIPST 176

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G +    ++S   +     R
Sbjct: 177 GRVGAFKLLS---VAGAYWR 193


>gi|163801061|ref|ZP_02194961.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
 gi|159175410|gb|EDP60207.1| threonyl-tRNA synthetase [Vibrio sp. AND4]
          Length = 642

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQDDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +        ++   ++     R
Sbjct: 190 NMSFCQHFTLM---NVAGAYWR 208


>gi|315453307|ref|YP_004073577.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
 gi|315132359|emb|CBY82987.1| threonyl-tRNA synthetase [Helicobacter felis ATCC 49179]
          Length = 612

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 77/215 (35%), Gaps = 24/215 (11%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLT----IDYQNRRQLSINHSATHLLHHALSTILGS 603
           KKAE I+   +  E G+L+    +                 + HS  HL+  A++ +   
Sbjct: 9   KKAEVIYDMQSAQELGLLQEGQPVAGAQAILFGESQEALEILRHSCAHLMAQAIAQLYPD 68

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
                G  +  +G  +D      I+  +L  IE  + +I  +  P+     +R++A    
Sbjct: 69  AQFFVGPVV-EEGFYYDFKTQTKISEEDLARIEARMLEIAKRAHPITKSYCSRQEAQQR- 126

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS---- 715
                      R  + ++  +   +++      LC G H+ +T  +    +   +     
Sbjct: 127 ----FKNDSLKRAVMANIPDDKLSIYAQGEFEDLCRGPHLPNTKFLQHFKLTKLAGAYLG 182

Query: 716 ---IRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
               +  ++RI      T Q  + +L   +E  K 
Sbjct: 183 GDASQEMLQRIYGIAFATKQSLKDYLTQLEEAKKR 217


>gi|229823243|ref|ZP_04449312.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
 gi|229787409|gb|EEP23523.1| hypothetical protein GCWU000282_00541 [Catonella morbi ATCC 51271]
          Length = 647

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 10/200 (5%)

Query: 521 YAEAGGQLGDTGCAIGD-----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
           + +   +  D G  +       G  L    +  K +G  V H       L  + ++ +  
Sbjct: 8   FPDGSVRHYDKGVTVDQVAASIGSSLAKATLAGKFQGQLVDH----DRPLEADGAIEIIT 63

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D        + HS  HL+ HAL+ +        G  I   G  +D      +T  +L ++
Sbjct: 64  DKSPEALEIMRHSTAHLMAHALTRLYPGIHFGVGPAI-ESGFYYDTDKEVQLTEDDLPAV 122

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +  II+QN P+V R ++R +A+          +    +    V         + LC 
Sbjct: 123 EKEMKKIISQNYPIVRREVSRAEALELFKHDPYKVELITDLPADEVITVYQQEDFTDLCR 182

Query: 696 GTHVSSTGEIMLLYIVSESS 715
           G HV STG+I +  ++S + 
Sbjct: 183 GIHVPSTGKIKVFKLLSLAG 202


>gi|237808486|ref|YP_002892926.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
 gi|259516783|sp|C4LFH3|SYT_TOLAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|237500747|gb|ACQ93340.1| threonyl-tRNA synthetase [Tolumonas auensis DSM 9187]
          Length = 642

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +++++E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDLDQMLTEEDIQALEARMLELAQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  VV + ++ ++A     +      Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVVKKTVSWQEARDVFESR--SETYKVAILDENIARDDKPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S            ++RI   T    +  L    ++L+  A 
Sbjct: 188 PNMRFCHHFKLQKTSGAYWRGDAKNKMLQRIYG-TAWADKKQLNAYLQRLEEAAK 241


>gi|16331761|ref|NP_442489.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
 gi|2501062|sp|Q55806|SYT_SYNY3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|1001722|dbj|BAA10559.1| threonyl-tRNA synthetase [Synechocystis sp. PCC 6803]
          Length = 603

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 23/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G   T  G  +D   ++P T A+LK+I+  +  II 
Sbjct: 25  IRHTTSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVAEPFTEADLKAIKKEMVKIIN 83

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSS 701
           + LPV+   ++RE+A     +  +   Y   +       +     G     LC G H+ S
Sbjct: 84  KKLPVIREEISREEAKQRIES--IQEPYKLEILDSIHEPITVYHLGDQWWDLCAGPHLES 141

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG--- 758
           T +I     ++  S+     R +A   Q  R +    +            +   +     
Sbjct: 142 TADINP-KAIALESVAGAYWRGDANKAQLQRIYGTAWE------------TPEQLAEYQR 188

Query: 759 -RVEEIWEEYRKLQLIH 774
            + E +  ++RKL    
Sbjct: 189 RKEEALKRDHRKLGKEL 205


>gi|168334535|ref|ZP_02692696.1| threonyl-tRNA synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 635

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 9/137 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+A+H+L HA+  +  +     G  I  +G  +D    K  +  EL  IE  +  I
Sbjct: 51  HTFWHTASHVLAHAVKNLYPTISLAIGPAID-NGFYYDFDAEKHFSDEELAKIEAEMKKI 109

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           +    P+V   + ++ A+      +    Y   +        +   +       LC G H
Sbjct: 110 VKAKHPIVKFALPKDKALEL----MKDEPYKIELINELPADAEITFYKQGDFVDLCAGPH 165

Query: 699 VSSTGEIMLLYIVSESS 715
           +S+T ++    + S + 
Sbjct: 166 LSNTKQVEAFKLTSCAG 182


>gi|326201674|ref|ZP_08191545.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325988274|gb|EGD49099.1| threonyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 635

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +L   H+A+H+L  A+  +        G  I   G  +D    KP +  EL+SIE  +  
Sbjct: 68  RLVYRHTASHVLAQAVKRLYPDVKLAIGPAID-SGYYYDFEREKPFSIDELESIEKEMEK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           II ++L +    + R +AI           Y   +     E E+   +       LC G 
Sbjct: 127 IIKEDLKLERFSLPRNEAIKF--MEEKAESYKVELIKDLPEGEEISFYKQGDFTDLCAGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           H+S T ++  + ++S   +     R
Sbjct: 185 HLSGTVKLKAIKLLS---VAGAYWR 206


>gi|323486959|ref|ZP_08092274.1| alanyl-tRNA synthetase [Clostridium symbiosum WAL-14163]
 gi|323399731|gb|EGA92114.1| alanyl-tRNA synthetase [Clostridium symbiosum WAL-14163]
          Length = 61

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%)

Query: 4  VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF 50
          V+ +R  FLEFF+  GH  + S SL+P ND +L+  NSGM P K IF
Sbjct: 6  VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKTIF 52


>gi|71083144|ref|YP_265863.1| threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123734387|sp|Q4FNH9|SYT_PELUB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71062257|gb|AAZ21260.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 638

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 21/218 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +L  + S+ +          +I H   H+   A+  +        G  I  +G  +D + 
Sbjct: 50  VLDKDCSVKIFTSKDKEGLETIRHDTAHITAMAVQELFPGTQVTIGPII-ENGFYYDFSR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L  IE+ + +I+ +++P    +  R+ AI+       G  Y   +     + 
Sbjct: 109 KEPFTEDDLNKIENKMKEIVDRDVPTTREVWKRDKAISHFKDK--GEIYKAEIIESIPQG 166

Query: 684 EDGGVH----SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ED  ++       LC G H+SSTG+I        + +     R                +
Sbjct: 167 EDVSIYFHGDWHDLCRGPHLSSTGKIG--KYFKLTKVSGAYWR------------GDSNN 212

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +      SQ ++   ++ I E  ++      K 
Sbjct: 213 EMLQRIYGTSWASQKDLDEYLKRIEEAEKRDHRKLGKE 250


>gi|58697298|ref|ZP_00372664.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536340|gb|EAL59818.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 580

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +  +     G  I  DG  +D    +  T+ +L +IE  + +I+ 
Sbjct: 69  IRHDAAHIMAQAVKELFPNTQITIGPTIQ-DGFYYDFATGRTFTTDDLTAIEKKMKEIVK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N   V  +  R+ AI     + +G KY   +     E E+  V+       LC G H  
Sbjct: 128 SNHRFVREVWTRKQAIDFF--SDIGEKYKVDIISSIPEGENLTVYRQGDFIDLCRGPHSP 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI---------TGQRARSHLMGQDEKLKSLAS 747
           STG +    ++    +     R +A          T  R +  L    E LK    
Sbjct: 186 STGRVKAFKLMK---VAGAYWRGDAKGPMLQRIYGTAWRNKDELNAYLECLKEAEK 238


>gi|257464982|ref|ZP_05629353.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
 gi|257450642|gb|EEV24685.1| threonyl-tRNA synthetase [Actinobacillus minor 202]
          Length = 643

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+   + +T  ++ ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDIDLDRSLTQEDIDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV + ++ ++A  +  +   G  Y   +   ++  +D            +C G HV
Sbjct: 130 TNYDVVKKRVSWQEARDTFESR--GEPYKMAILDENISKDDHPALYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     +     R ++      R +     +K K LA +L
Sbjct: 188 PNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLADYL 233


>gi|187736219|ref|YP_001878331.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426271|gb|ACD05550.1| threonyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835]
          Length = 630

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H+L  A+  +        G  +  +G  +DV     I++ + + IE+ +  ++
Sbjct: 21  RLRHSCAHVLATAICRLWPDAQLAGGPAVD-NGFYYDVELDHRISTEDFERIEEEMKKVV 79

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-------------TKYNDRVRVVSVEYEDGGVHS 690
            +N      +++R DA+    +  LG                ND      +     G  +
Sbjct: 80  KENQVFQKEVISRADAMKMAESGELGALGPRSEPSRFKIDLLNDIPEDEEISLYRNGDFT 139

Query: 691 SALCGGTHVSSTGEIMLLYIVSESS 715
             LC G HV  TG      I+S +S
Sbjct: 140 D-LCAGPHVGRTGNCKAFKIMSVAS 163


>gi|153217256|ref|ZP_01951020.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124113711|gb|EAY32531.1| threonyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 410

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 74/186 (39%), Gaps = 21/186 (11%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           ++  V+  A  +  H A +E  I+ T+  +             + HS  HLL HAL  + 
Sbjct: 39  RVNGVRVDACDLIEHDASLE--IITTKDEIDG--------LEIVRHSCAHLLGHALKQLY 88

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661
            +     G  I   G  +D+   + ++  +L+ IE  + ++      VV + ++ ++A  
Sbjct: 89  PNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKTKYAVVKKKVSWQEARD 147

Query: 662 SGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVSSTGEIMLLYIVSESSI 716
           +  +   G  Y   +   +V  +D  G++       +C G HV   G      ++   +I
Sbjct: 148 TFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVPHMGFCQNFKLL---NI 202

Query: 717 RAGIRR 722
                R
Sbjct: 203 AGAYWR 208


>gi|317131189|ref|YP_004090503.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315469168|gb|ADU25772.1| threonyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 645

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 15/182 (8%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +  R  L+   +L L        + + NH+A+H+L  A+  +        G  I  DG 
Sbjct: 44  VVDLRTQLQDGDTLELLTFDDPDGKKAFNHTASHILAQAVKRLYPEVKLTIGPAI-EDGF 102

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +D       T  EL  IE  +  I+ ++LP+    +   +A+           Y   + 
Sbjct: 103 YYDFDSDLSFTQEELAKIEAEMKKIVKEDLPIERFTLPAPEAVK--LMEEKSEPYKVELI 160

Query: 678 VVSVE-YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEA 725
                  E    +       LC G H+  TG +    + S +            +RR+  
Sbjct: 161 NEHAGKGEPISFYKQGEFTELCAGPHLPDTGRVKAFKLTSSTGAYWRGDAKNKMLRRVYG 220

Query: 726 IT 727
             
Sbjct: 221 TA 222


>gi|56460507|ref|YP_155788.1| threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
 gi|73919798|sp|Q5QYN4|SYT_IDILO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56179517|gb|AAV82239.1| Threonyl-tRNA synthetase [Idiomarina loihiensis L2TR]
          Length = 638

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 34/231 (14%)

Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
           +  H A +E    + +  + +           I HS  HL+ HA+  +        G  I
Sbjct: 50  LIEHDARIEIVTPKDDDGVHI-----------IRHSCAHLMGHAVKQMWPDAKMAIGPVI 98

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +G  +D+      T  +L+ IE  + ++      VV +  + ++A  +         Y
Sbjct: 99  D-NGFYYDIDVDHTFTQEDLEKIEKRMKELAKTEYAVVKKKASWKEARETFVERH--EPY 155

Query: 673 NDRVRVVSVEYE-DGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
              +    +  +   G++       +C G HV +        I+  +             
Sbjct: 156 KIEILDEDIPTDATPGLYHHEEYIDMCRGPHVPNMKFCQHFKIMKMAG------------ 203

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
              A       ++ L+ +       +  +   ++ + E  ++     AK +
Sbjct: 204 ---AYWRGDSDNKMLQRIYGTAWADKKQLKAYLQRLEEAEKRDHRKIAKAQ 251


>gi|302389962|ref|YP_003825783.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200590|gb|ADL08160.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase
           [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 11/171 (6%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K  G+ V         +  + S+ +        + +  HS +H++  A+  +  +     
Sbjct: 42  KVNGVIVDL----NHRIEEDSSVEILTFEDEEGKDAFRHSTSHVMAQAVKRLFPNVKLAI 97

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  I  +G  +D    +  T  +L+ IE  +  I+A++ P +   ++RE+A+       +
Sbjct: 98  GPSI-EEGFYYDFDRDESFTPEDLERIEKEMEKIVAEDQPFIRMEVSREEAVKI--LKEM 154

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
           G  Y   +     +      + +     LC G H+ STG I    + S + 
Sbjct: 155 GEPYKVELVENLPDDAKISFYKNGEFIDLCAGPHIPSTGRIKAFKLTSLAG 205


>gi|228967672|ref|ZP_04128693.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792048|gb|EEM39629.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 645

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          + +D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEISDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTAFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|315186787|gb|EFU20545.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Spirochaeta
           thermophila DSM 6578]
          Length = 578

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HSA H++  A+  +        G  I   G  +D    + +T  +L+ IE+ +   I
Sbjct: 8   RIRHSAAHIMADAVLRLFPEAKFAIGPAIDT-GFYYDFDLPRSLTPEDLEKIEELMRKTI 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHV 699
            ++LP    +++RE+A            Y   +     E E+  ++       LC G HV
Sbjct: 67  EEDLPFKREVISREEARELFKDQ----PYKLEILEEIPEGEEVSIYRHGTFVDLCRGPHV 122

Query: 700 SSTGEIML--LYIVSESSIRAGIRR 722
             TG+I    + ++S   I     R
Sbjct: 123 ERTGQINPDAVKLLS---IAGAYWR 144


>gi|289548737|ref|YP_003473725.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
 gi|289182354|gb|ADC89598.1| threonyl-tRNA synthetase [Thermocrinis albus DSM 14484]
          Length = 645

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 8/180 (4%)

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G   ++  VQ    G      +  +  +R    +             + H+ +H++  AL
Sbjct: 22  GEVFRLAGVQDAIAGRLGDRILDLQTPVREGGKIKPIRKGDPESLEVMRHTLSHIMAQAL 81

Query: 598 STILGSHVSQNG-SCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
             I G      G    T +G  +DV      I   +L  IE+ +  I+++NLP+V + ++
Sbjct: 82  KEIYGYDRVHLGVGPTTEEGFYYDVEVEGISIREEDLPIIEERMRQIVSRNLPIVRQEVS 141

Query: 656 REDAIASGAAALLGTKYNDRVRV----VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +E A+    +     K +   R+    V   Y+ G      LC G HV STG +    + 
Sbjct: 142 KEYALKLFESLKEPYKLDIINRIQEGDVISVYQQGEF--VDLCRGPHVPSTGMVGAFKLT 199


>gi|146332591|gb|ABQ22801.1| alanyl-tRNA synthetase-like protein [Callithrix jacchus]
          Length = 109

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLS 859
           S   +K L   +   +        ML  +  E  K + L  V ++  +R   A +  +  
Sbjct: 5   SGASAKALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQV 64

Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           +  L  G GGG+   AQ+ G N     +A+    SF +
Sbjct: 65  SG-LMDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQ 101


>gi|240143521|ref|ZP_04742122.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|257204557|gb|EEV02842.1| threonine--tRNA ligase [Roseburia intestinalis L1-82]
 gi|291540396|emb|CBL13507.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Roseburia
           intestinalis XB6B4]
          Length = 591

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 64/162 (39%), Gaps = 11/162 (6%)

Query: 575 ID-YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAEL 632
           +D  ++ R  ++NHS  H++  A+  +  +     G  +  +G  +D+      +    +
Sbjct: 2   VDFKEDERLNTLNHSCAHVMAQAVKHLYPNAKFWVGPVV-KEGFYYDIDLGDTAVNDDVI 60

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            +IE  +  +  +   +  R +++ +A+             D +   ++   D G  +  
Sbjct: 61  AAIEKEMKKVCKEGKKIYRREISKAEALELFKDDEYKLDLIDGLEDGNISVYDQGDFTD- 119

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIR-AG------IRRIEAIT 727
           LC G HV +T       ++  S +   G      ++RI  + 
Sbjct: 120 LCRGPHVDNTKLCKNFKLIKYSGVYWKGDANNHVMQRIYGVC 161


>gi|86158405|ref|YP_465190.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123736663|sp|Q2IJC0|SYT_ANADE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|85774916|gb|ABC81753.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 650

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H A H++   +  +        G  I  DG  +D     P T  +L+ IE   N+ I  
Sbjct: 76  RHDAAHVMASVVQKLYPGTQVTIGPAI-EDGFYYDFARETPFTPEDLEKIEKATNEAIKA 134

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGTH 698
           +LP V   ++ E A+A      +G +Y     V  +  +                C G H
Sbjct: 135 DLPFVRSEISMEAALALFEG--MGERYKVE-IVKDIAAKGAKTLTLYKHGDWVDFCLGPH 191

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
             STG I ++ ++   ++     R +A      R +     +K K L + L      V  
Sbjct: 192 GPSTGRIGVVKLL---NVAGAYWRGDAKNAMLQRIYGTAFFDK-KELDAHL-AKLEEVKK 246

Query: 759 R 759
           R
Sbjct: 247 R 247


>gi|37522455|ref|NP_925832.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
 gi|73919794|sp|Q7NCU0|SYT_GLOVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|35213456|dbj|BAC90827.1| threonyl-tRNA synthetase [Gloeobacter violaceus PCC 7421]
          Length = 627

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 18/151 (11%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           +   I HS +H+L  A+  +        G  I  +G  +D     P T  +LK IE  + 
Sbjct: 44  KLHRIRHSTSHILAMAVQKLFPETKVTIGPAI-ENGFYYDFDRPTPFTPEDLKKIEKEMR 102

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-------DRVRVVSVEYEDGGVHSSAL 693
            I+ Q LP+V   + R +A+     AL G  Y        D    VS+ Y  G      L
Sbjct: 103 RIVQQKLPLVREEVPR-EAMRERLEAL-GEPYKLELFEGFDHDAPVSL-YRTGDWWD--L 157

Query: 694 CGGTHVSSTGEIML--LYIVSESSIRAGIRR 722
           C G HV ST EI      +    S+     R
Sbjct: 158 CAGPHVESTAEIHPNAFKL---RSVAGAYWR 185


>gi|13541587|ref|NP_111275.1| metal-dependent hydrolase [Thermoplasma volcanium GSS1]
 gi|14324983|dbj|BAB59909.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 236

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 8/210 (3%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVL 573
            D++ FY    G+  DTG  I +G   QI D     +G ++H   ++         S+  
Sbjct: 30  VDKSIFYPTLFGEPNDTGKVIIEGKEYQIVDTI--YDGEYIHLISMDTYPQGLVGKSVKQ 87

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID++ R       +A  L+      + G     N +    D    D+     IT  E+ 
Sbjct: 88  VIDWEKRYVHMRFRTALRLISGLSYKLWGVSCRVNETY--DDRAWIDIEKP-DITEEEIT 144

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +    N+++ QNL +    ++ ++ +       +          + +    G       
Sbjct: 145 EVMSKANEMVKQNLEISFSYISMDEFLNRDDLKKMSIHETFDDEKIRIMRVPGLPDQPEF 204

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             G +V +TGE+  +   +  +      RI
Sbjct: 205 --GVNVKNTGEVGEIKYKTTKARGKVSNRI 232


>gi|152978995|ref|YP_001344624.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
 gi|171704313|sp|A6VNZ2|SYT_ACTSZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150840718|gb|ABR74689.1| threonyl-tRNA synthetase [Actinobacillus succinogenes 130Z]
          Length = 643

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  +L ++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPDVKMAIGPTI-ENGFYYDVDLDRSLTQEDLDTLEKRMSELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  VV + +  ++A  +      G  Y   +   ++  +D            +C G HV
Sbjct: 130 TNYDVVKQRVTWQEARDTFEKR--GEPYKMAILDENIAKDDHPALYHHQEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        ++  +       S    ++RI   T    +  L G   +L+  A 
Sbjct: 188 PNMRFCHHFKLMKVAGAYWRGDSKNKMLQRIYG-TAWADKKQLNGYLTRLEEAAK 241


>gi|156974364|ref|YP_001445271.1| threonyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116]
 gi|166225516|sp|A7N009|SYT_VIBHB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|156525958|gb|ABU71044.1| hypothetical protein VIBHAR_02079 [Vibrio harveyi ATCC BAA-1116]
          Length = 642

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQDDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYEVVKKKVSWQEARDTFESR--GEPYKVEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           + G      ++   ++     R
Sbjct: 190 NMGFCQHFTLM---NVAGAYWR 208


>gi|330445795|ref|ZP_08309447.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489986|dbj|GAA03944.1| threonyl-tRNA synthetase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 643

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 12/152 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D ++  ++   HS  HLL HA+  +        G  I  +G  +D+   + +T  +L+ I
Sbjct: 64  DEEDGLEIVR-HSCAHLLGHAIKQLYPEAKMAIGPTID-NGFYYDIDLEQSLTQEDLEVI 121

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA-- 692
           E  + ++      VV + ++ ++A  +  A   G  Y   +   +V  +D  G++     
Sbjct: 122 EKRMLELAKTKYQVVKKKVSWQEARDAFEAR--GETYKIEILDENVARDDRPGLYHHEEY 179

Query: 693 --LCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +C G HV   G      ++S   +     R
Sbjct: 180 IDMCRGPHVPHMGFCQNFKLLS---VAGAYWR 208


>gi|218782046|ref|YP_002433364.1| threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
 gi|226701455|sp|B8FN26|SYT_DESAA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|218763430|gb|ACL05896.1| Threonyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01]
          Length = 636

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 6/159 (3%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + T+ S+V       +    + HSA H++  A+  +        G  I  DG  +D+  
Sbjct: 50  PIETDASVVFITTKDEQGLDIMRHSAAHVMAEAILNLYPDAKLTIGPVI-EDGFYYDIDM 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             PI+  +   IE  +N II    P V + +++ +A+         T+    +   ++  
Sbjct: 109 P-PISEDDFPKIEQEINKIIKAKKPFVRKTLSKAEALDFYKDNAFKTELISELEDGTISI 167

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            + G  +  LC G HV +     L+  +    +     R
Sbjct: 168 YEQGGFTD-LCRGPHVPN---TGLVKTLKLMKVSGAYWR 202


>gi|89071308|ref|ZP_01158467.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
 gi|89043173|gb|EAR49409.1| threonyl-tRNA synthetase [Oceanicola granulosus HTCC2516]
          Length = 654

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 19/175 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I   G  +D   ++P T  +L +IE  + +II +
Sbjct: 79  RHDLAHIMARAVQEIWPDVKVTIGPVI-EHGWYYDFDRAEPFTPEDLGAIEKKMREIINK 137

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
             PV T    R+ AIA          Y   +       E            LC G H+  
Sbjct: 138 RDPVRTETWERDRAIAHYRDN--DEPYKVELIESIPGSEPIRMYWHGDWQDLCRGPHLQH 195

Query: 702 TGEI--MLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           TG++      ++S +       S RA ++RI     +T    ++HL   +E  K 
Sbjct: 196 TGQVPGDAFKLMSVAGAYWRGDSSRAMLQRIYGAAFLTRDALKAHLHRLEEAQKR 250


>gi|167042805|gb|ABZ07523.1| putative tRNA synthetase class II core domain (G, H, P, S and T)
           [uncultured marine microorganism HF4000_ANIW137I15]
          Length = 627

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R+    +HS  H++  A+  +        G  I  +G  +D    +P T  +L+ I
Sbjct: 50  DPEGRQ--VYHHSTAHIMAEAVQDLFPGTKVTIGPPI-ENGFYYDFDRDEPFTPDDLERI 106

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  + +I A+N P V   +++E+A            Y   + +  +  E   ++      
Sbjct: 107 ETRMREIRAENRPFVREPVSKEEARKLFQER--DEPYKLEL-LDGIPDETVSIYRQGEWL 163

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            LC G HV STG I  + ++S   +     R
Sbjct: 164 DLCRGPHVPSTGFIEAVKLLS---VAGAYWR 191


>gi|295111615|emb|CBL28365.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Synergistetes
           bacterium SGP1]
          Length = 633

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 18/171 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G CI  DG  +DV  +  IT  +L +IE  +  +  
Sbjct: 70  LRHSCAHLMAQAIERLYPGTHFGIGPCI-KDGFYYDVDATGTITEQDLPAIEAEMRKLTG 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
               V    M REDA+        G  Y + + +  +E     ++       LC G HV 
Sbjct: 129 AAEKVEREEMRREDALKFFKDR--GDPYKEEL-ISELEAPTVSLYRQGDYVDLCRGPHVP 185

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIE---AITGQRARSHLMGQDEK 741
            T  I    ++S +            + RI      T    +++L   +E 
Sbjct: 186 DTSVIRNFKLLSVAGAYWRGSEKNKMLTRIYGTAFATPDELKAYLKRMEEA 236


>gi|323447698|gb|EGB03610.1| hypothetical protein AURANDRAFT_55515 [Aureococcus anophagefferens]
          Length = 657

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 3/140 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS +H++  A+  +    V         +G  +D    + I+  +LK I+  ++ II 
Sbjct: 61  IRHSTSHIMALAVKRVFKDDVQVTIGPWIENGFYYDFYREEQISDKDLKRIKKEMDKIIK 120

Query: 645 QNLPVVTRIMNREDAIASGAA--ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +LP++  ++ RE+A A   A       +  D +   ++ +   G     LC G HV ST
Sbjct: 121 ADLPIIREVVPREEARARLLAEGETFKVEVLDGITDDTISFYRIGDEWWDLCAGPHVPST 180

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G I     V+  S+     R
Sbjct: 181 GAIKP-KAVALQSVAGAYWR 199


>gi|228985474|ref|ZP_04145631.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774239|gb|EEM22648.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 639

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIVTIDSNEGVEIAR-HSAAHILAQAIKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLREIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|148654295|ref|YP_001274500.1| threonyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|148566405|gb|ABQ88550.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Roseiflexus sp.
           RS-1]
          Length = 595

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HSA H++  A+  I        G  I  DG  +D    +P+T  +L+ IE  +  II
Sbjct: 12  RLRHSAAHVMAQAVLEIFPEGKIAIGPPI-EDGFYYDFDLPRPLTPDDLEEIEQRMRRII 70

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----------TKYNDRVRVVSVEYEDGGVHSSA 692
           A   P V R+++ ++A A                    +Y ++    +V           
Sbjct: 71  AGRHPFVYRVVDPDEARALFRDQPYKLELIEGLLHGQDEYGEQSGSSTVISTYKHDTFED 130

Query: 693 LCGGTHVSSTGEIML--LYIVSESSIRAGIRR 722
           LC G H+  TG+I      ++S   +     R
Sbjct: 131 LCRGPHLEHTGQIPPDAFKLMS---VAGAYWR 159


>gi|47565742|ref|ZP_00236782.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
 gi|47557378|gb|EAL15706.1| threonyl-tRNA synthetase [Bacillus cereus G9241]
          Length = 639

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIVTIDSNEGVEIAR-HSAAHILAQAIKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLREIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|289549510|ref|YP_003470414.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289179042|gb|ADC86287.1| Threonyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 638

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A H+L  AL+ +    +   G  I  +G  +D+   + I+  +L  IE  +  I 
Sbjct: 74  AMRHTAAHVLAQALTRLYPQVLLTIGPVID-NGFYYDIDLDESISEVDLNKIEKEMKKIQ 132

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           ++NL +V   ++ ++A      AL          +   + E   V+       LC G HV
Sbjct: 133 SENLDIVKENVSYDEAK-----ALFKDNPYKLEIIEQYQGEQLSVYRQGEFLDLCVGPHV 187

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +  + +   S 
Sbjct: 188 PNTKFVKHVKLTKVSG 203


>gi|91762425|ref|ZP_01264390.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718227|gb|EAS84877.1| Threonyl-tRNA synthetase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 638

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 21/218 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           ++  + S+ +          +I H   H+   A+  +        G  I  +G  +D + 
Sbjct: 50  VIDEDCSVKIFTSKDKEGLETIRHDTAHITAMAVQELFPGTQVTIGPII-ENGFYYDFSR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P T  +L  IE+ + +I+ +++P    +  R+ AI+       G  Y   +     + 
Sbjct: 109 KEPFTEDDLNKIENKMKEIVDRDVPTTREVWKRDKAISHFKDK--GEIYKAEIIESIPQG 166

Query: 684 EDGGVH----SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
           ED  ++       LC G H+SSTG+I        + +     R                +
Sbjct: 167 EDVSIYFHGDWHDLCRGPHLSSTGKIG--KYFKLTKVSGAYWR------------GDSNN 212

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           E L+ +      SQ ++   ++ I E  ++      K 
Sbjct: 213 EMLQRIYGTSWASQKDLDEYLKRIEEAEKRDHRKLGKE 250


>gi|331090802|ref|ZP_08339649.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399910|gb|EGG79569.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 653

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 24/190 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D  H+ P ++ +L +IE  +  II
Sbjct: 69  ALRHTASHVLAEAVKRLYPEAKLAIGPSIDT-GYYYDFEHA-PFSNEDLATIEKEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    + R +AIA       G  Y   +     E      +       LC G H+
Sbjct: 127 KEGAKIERFELPRAEAIAY--MEEKGEPYKVELINDLPEDAVISFYKQGEFVDLCAGPHL 184

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    ++S S                A      +++ L  +       +  +   
Sbjct: 185 MSTKGVKAFKLISSSG---------------AYWRGDEKNKMLTRVYGTAYAKKDELKAH 229

Query: 760 VEEIWEEYRK 769
           +E + EE +K
Sbjct: 230 MEHL-EEIKK 238


>gi|315659856|ref|ZP_07912715.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
 gi|315495144|gb|EFU83480.1| threonine--tRNA ligase [Staphylococcus lugdunensis M23590]
          Length = 638

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A H+L  AL+ +    +   G  I  +G  +D+   + I+  +L  IE  +  I 
Sbjct: 74  AMRHTAAHVLAQALTRLYPQVLLTIGPVID-NGFYYDIDLDESISEVDLNKIEKEMKKIQ 132

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           ++NL +V   ++ ++A      AL          +   + E   V+       LC G HV
Sbjct: 133 SENLDIVKENVSYDEAK-----ALFKDNPYKLEIIEQYQGEQLSVYRQGEFLDLCVGPHV 187

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +  + +   S 
Sbjct: 188 PNTKFVKHVKLTKVSG 203


>gi|297583666|ref|YP_003699446.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
 gi|297142123|gb|ADH98880.1| threonyl-tRNA synthetase [Bacillus selenitireducens MLS10]
          Length = 649

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 73/193 (37%), Gaps = 13/193 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D   +I  G++      +   E I +   I E   +      +LT D +   +
Sbjct: 18  ERGSTMEDVAQSISPGLKKNAVAGKVNGEPIDLRTPIEEDAAIE-----ILTYDSKEGLE 72

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  A+  +    V      +  +G  +D+     +T  +L  IE  +  I
Sbjct: 73  VLR-HSTAHLMAQAVKRLF-DDVKLGVGPVIEEGFYYDIDMEHKLTPEDLPKIEKEMKKI 130

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I +N  +    + RE+A+       +G      +     + E   ++       LC G H
Sbjct: 131 IDENHEITRVEVPREEAVRRYE--EIGDDLKLELLEDIPKGEQISIYEQGEFFDLCRGVH 188

Query: 699 VSSTGEIMLLYIV 711
           V  T ++    ++
Sbjct: 189 VPQTSKLKKFKLL 201


>gi|322379034|ref|ZP_08053437.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
 gi|322380800|ref|ZP_08054906.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321146804|gb|EFX41598.1| threonyl-tRNA synthetase [Helicobacter suis HS5]
 gi|321148526|gb|EFX43023.1| threonyl-tRNA synthetase [Helicobacter suis HS1]
          Length = 601

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 20/174 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A+  +        G  +  +G  +D   +  I+  +L  +E  + +I  
Sbjct: 39  IRHSCAHLLAQAIKQLYPDAQFFVGPVVQ-EGFYYDFKTASKISEDDLGVVEAKMQEIAK 97

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P++ + M+R++A+                 +  +E +   V++      LC G H+ 
Sbjct: 98  KKHPILKQTMSRQEALER-----FKNDPLKHAVMSKIEGDHFSVYTQGEFEDLCRGPHLP 152

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
            T  +    +   +            + RI      T +  + +L   +E  K 
Sbjct: 153 HTALLQHFKLTKLAGAYLGGDEKAEMLTRIYGIAFATKEALKEYLYQLEEAKKR 206


>gi|325288434|ref|YP_004264615.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963835|gb|ADY54614.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 636

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 24/211 (11%)

Query: 564 ILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           IL T+  + +LT+D +   ++   HS  HLL  A+  +        G  I  +G  +D  
Sbjct: 50  ILSTDAEVEILTMDSEEGLEIMR-HSCAHLLAQAVQELYPGTHFGIGPAI-ANGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
                T  +L+ IE  +  +  +      + + R++A++       G +Y   +     E
Sbjct: 108 SEHIFTPEDLEKIEQKMKKLAKEGQKFTRQELARQEALSFFEQK--GEQYKVELIRDLPE 165

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
                V++      LC G H+ ST  I    +    S+     R               +
Sbjct: 166 EAVISVYAQGDFADLCAGPHLPSTKPIKAFKL---QSVAGAYWR------------GSEK 210

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ L+ +       Q  +   + ++ E  R+
Sbjct: 211 NKMLQRIYGLAFAKQTELDDFLFKLEEAKRR 241


>gi|116075451|ref|ZP_01472711.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
 gi|116067648|gb|EAU73402.1| threonyl-tRNA synthetase [Synechococcus sp. RS9916]
          Length = 609

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 3/155 (1%)

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++VL    ++   L I HS +H++  A+  +        G   T  G  +D     P T
Sbjct: 21  ETVVLPKTSESDTLLRIRHSMSHVMAMAVQKLFPKAQVTIGPW-TESGFYYDFDSPDPFT 79

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGG 687
            A+LK+I   +  II + LP+    ++R +A A   A     K      +   +     G
Sbjct: 80  EADLKAIRKEMIKIINRKLPLERVEVSRAEAEAKIKAQNEPYKLEILSGIQEPITLYTLG 139

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                LC G HV++T E+         S+     R
Sbjct: 140 EEWWDLCAGPHVANTSELNA-KAFELESVAGAYWR 173


>gi|163942310|ref|YP_001647194.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|229013779|ref|ZP_04170907.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|229062260|ref|ZP_04199581.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|229135411|ref|ZP_04264199.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|163864507|gb|ABY45566.1| threonyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4]
 gi|228648054|gb|EEL04101.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228716988|gb|EEL68669.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228747448|gb|EEL97323.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 645

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRAEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTGFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|300934571|ref|ZP_07149827.1| threonyl-tRNA synthetase [Corynebacterium resistens DSM 45100]
          Length = 706

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 65/190 (34%), Gaps = 29/190 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  +G  +D   ++P T  +L  IE  +  II 
Sbjct: 95  IRHSAAHVLAQAVQKEFPGTKLGIGPAI-ENGFYYDFDVAEPFTPEDLNKIEKTMKKIIK 153

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYED------------------ 685
                  +   + ++A A        T+  D    V  + ++                  
Sbjct: 154 SGQKFERKAYASVDEARAEYTHEPFKTELIDDKGNVDPDSDEATEVGSGELTAYSNVNPR 213

Query: 686 -GGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMG 737
            G V    LC G HV +T  I    I   S+        +AG++RI   T   ++  L  
Sbjct: 214 TGDVEWYDLCRGPHVPTTRYIPAFAITRSSAAYWRGDQSKAGLQRIYG-TAWESKEALES 272

Query: 738 QDEKLKSLAS 747
             E L     
Sbjct: 273 YQEMLAEAEK 282


>gi|291521022|emb|CBK79315.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus
           catus GD/7]
          Length = 585

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 83/237 (35%), Gaps = 25/237 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
            +NHS  HL+  A+  +        G  +  +G  +DV      I   ++ +IE  +  +
Sbjct: 12  MLNHSCAHLMAQAIKHLYPQAKFWVGPVV-AEGFYYDVDLGDDVIRDEDIAAIEKEMKKV 70

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                 +V   +++E+A+             + +   ++     G  +  LC G HV + 
Sbjct: 71  AKSGKKIVRHEISKEEALEMFKDDEYKIDLINGLEDGNISCYTQGDFTD-LCRGPHVDNV 129

Query: 703 GEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL--KVSQ 753
                  ++  S       S    ++RI  +    A   L    + L+        K+ +
Sbjct: 130 KLCRHFKLLRHSGAYWKGDSKNKVLQRIYGVCFPTA-EELEAHLQLLEEAKERDHRKIGK 188

Query: 754 GNVVGRVEEIWEE------------YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
              +  V+++               +++L+    +++ +L  + +    +  VN   
Sbjct: 189 DMELFMVDDLVGRGLPMFLPKGYTIWQELENYIKEKERKLGYQHVMTPCVGTVNLYK 245


>gi|229178727|ref|ZP_04306091.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
 gi|228604885|gb|EEK62342.1| Threonyl-tRNA synthetase [Bacillus cereus 172560W]
          Length = 640

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|229044114|ref|ZP_04191800.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
 gi|229109806|ref|ZP_04239391.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228673651|gb|EEL28910.1| Threonyl-tRNA synthetase [Bacillus cereus Rock1-15]
 gi|228725227|gb|EEL76498.1| Threonyl-tRNA synthetase [Bacillus cereus AH676]
          Length = 640

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEITR-HSAAHILAQAVKRMYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|152996610|ref|YP_001341445.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
 gi|189083612|sp|A6VYI1|SYT_MARMS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|150837534|gb|ABR71510.1| threonyl-tRNA synthetase [Marinomonas sp. MWYL1]
          Length = 645

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + +P T  +L +IE  + +++ 
Sbjct: 71  IRHSFAHLVGHAVKQLYPTAQMAIGPVID-EGFYYDIAYERPFTPDDLAAIEKRIAELVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-EDGGVHSSA----LCGGTHV 699
            +  VV R+    +A         G  Y   +     E  ++ G++       +C G HV
Sbjct: 130 TDYDVVKRMTPIAEARQQFVDR--GESYKVALIDDMDESTKEVGLYYHEEYMDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +    ++  + 
Sbjct: 188 PNTRVLRHFKLMKLAG 203


>gi|296502926|ref|YP_003664626.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
 gi|296323978|gb|ADH06906.1| threonyl-tRNA synthetase [Bacillus thuringiensis BMB171]
          Length = 640

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEITR-HSAAHILAQAVKRMYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|228900981|ref|ZP_04065194.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
 gi|228858679|gb|EEN03126.1| Threonyl-tRNA synthetase [Bacillus thuringiensis IBL 4222]
          Length = 640

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEIDDSLKLEILEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|297565426|ref|YP_003684398.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
 gi|296849875|gb|ADH62890.1| threonyl-tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 652

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 67/208 (32%), Gaps = 32/208 (15%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL------GSHVSQNGSCITPDGL 617
            L     L +  +          H+  H+L  A+             V      +  +G 
Sbjct: 49  PLPQGAKLKILTEKDPEFAQLFRHTLAHVLAQAVREFFAAKGFDPDAVKLAIGPVIENGF 108

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            +D+   +P+   +L  IE  ++ I+ +NL +   ++ RE+A+           Y   + 
Sbjct: 109 YYDIDPPEPLGEGDLPEIEARMHQIVKENLELRRFVLPREEALRRFEGK---DPYKTELI 165

Query: 678 VVSVEYEDGGVHSS--------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR------- 722
               E  +   ++          LC G HV STG I        + I     R       
Sbjct: 166 QDLPEGVEISFYAQGEGTHGFTDLCRGPHVPSTGRIPPY--FKLTHIAGAYWRGDSRRPQ 223

Query: 723 ------IEAITGQRARSHLMGQDEKLKS 744
                 I   + +    +L  Q+E  K 
Sbjct: 224 LQRIYGIAFRSKEELDDYLWRQEEAKKR 251


>gi|254423005|ref|ZP_05036723.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
 gi|196190494|gb|EDX85458.1| threonyl-tRNA synthetase [Synechococcus sp. PCC 7335]
          Length = 618

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 8/168 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G  I   G  +D    +P T  +LKSI+  +  II
Sbjct: 42  RIRHTFSHVMAMAVQRLFPKAQVTIGPSIDY-GFYYDFDAPEPFTDKDLKSIKKEMVKII 100

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSALCGGTHVSST 702
            + LPV+   ++RE+A           K     R+   +     G     LC G H+ +T
Sbjct: 101 KKGLPVIREEVSREEAKRRIEELKEPYKLEILERLEEPITLYHLGDQWWDLCAGPHIETT 160

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            ++         S+     R     G   ++ L             LK
Sbjct: 161 KDLNP-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWETPEELK 202


>gi|148264672|ref|YP_001231378.1| threonyl-tRNA synthetase [Geobacter uraniireducens Rf4]
 gi|146398172|gb|ABQ26805.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Geobacter
           uraniireducens Rf4]
          Length = 645

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 103/300 (34%), Gaps = 39/300 (13%)

Query: 525 GGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           G  + D   +IG G  +  I     K  G  V  A V    L     + +  +       
Sbjct: 28  GATVYDLAASIGAGLAKAAIAG---KINGDLVDLATV----LPDGAKVEIITEKSAEALE 80

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS +HL+  A+ ++        G  I   G  +D     P T  +L+ IE  ++++ 
Sbjct: 81  IIRHSTSHLMAQAVKSLFPEAKVTIGPAIET-GFYYDFDVDHPFTPEDLEKIEKKMSELA 139

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             NL +  +++   DAI       +G  Y   + +  +  +   ++       LC G H+
Sbjct: 140 KANLKIERQVLTGADAIKLF--RDMGEIYKVEL-IEDLSADTVSLYRQGDFVDLCRGPHL 196

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  I    + S   I     R               + + L+ +       +  +   
Sbjct: 197 PSTSHIKAFKLTS---IAGAYWR------------GDEKRKMLQRVYGTAFADKKELDAY 241

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  + E  R+       RKL   ++  S         +           L+++++  ++K
Sbjct: 242 LARLEEAKRRDH-----RKLGKELDLFSFSDEVGAGLVIWHPKGA---MLRTILEDFERK 293


>gi|282599730|ref|ZP_05971662.2| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
 gi|282568410|gb|EFB73945.1| threonine--tRNA ligase [Providencia rustigianii DSM 4541]
          Length = 653

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV     +T  +L  +E  + ++  
Sbjct: 82  IRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDLDYTLTQEDLDKLEKRMLELAK 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
            +  VV + ++  +A  +      G  Y   +   ++  +D  G++       +C G HV
Sbjct: 141 TDYDVVKKRVSWAEARETFVGR--GEDYKVEILDQNISQDDRPGLYHHQEYIDMCRGPHV 198

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     +     R  +      R +     +K K LA++L
Sbjct: 199 PNMRFCHHFKL---QKVAGAYWRGNSDNKMLQRIYGTAWADK-KQLAAYL 244


>gi|225849423|ref|YP_002729587.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644143|gb|ACN99193.1| threonyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 641

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
           + HS  H++  AL  I G      G    T +G  +DV      +T  +L  IE+ + +I
Sbjct: 71  LRHSLAHIMAQALKEIYGDENVHLGIGPTTENGFYYDVEIEGVRLTDEDLPKIEEKMKEI 130

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSS----ALCGGT 697
           I +   +    + RE+A+           Y  D ++    E E   ++       LC G 
Sbjct: 131 IKKGYQIERYELPREEAVKFFEEK--KEIYKIDIIKHNIPEGEPISLYKQGDFVDLCRGP 188

Query: 698 HVSSTGEIMLLYIVSESS 715
           H+ ST +     ++S S 
Sbjct: 189 HLPSTDKAGAFKLISVSG 206


>gi|206971420|ref|ZP_03232370.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228952703|ref|ZP_04114777.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|229069894|ref|ZP_04203176.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|206733405|gb|EDZ50577.1| threonyl-tRNA synthetase [Bacillus cereus AH1134]
 gi|228713297|gb|EEL65190.1| Threonyl-tRNA synthetase [Bacillus cereus F65185]
 gi|228806979|gb|EEM53524.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 640

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|89073900|ref|ZP_01160406.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
 gi|89050228|gb|EAR55732.1| threonyl-tRNA synthetase [Photobacterium sp. SKA34]
          Length = 631

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLYPDAKMAIGPTID-NGFYYDIDLEQSLTQEDLEVIEKRMIELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVVKKKVSWQEARDAFDAR--GETYKIEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++S   +     R
Sbjct: 190 HMGFCQNFKLLS---VAGAYWR 208


>gi|195952891|ref|YP_002121181.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932503|gb|ACG57203.1| threonyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 637

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 94/261 (36%), Gaps = 32/261 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDI 642
           + HS  H++  AL  I G      G    T DG  +DV      I   +LK IE+ + +I
Sbjct: 68  LRHSLAHIMAQALKEIYGDEKVHLGIGPTTEDGFFYDVEVEGHHIGEEDLKIIENKMKEI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I + L +  + + RE+A+           Y   +           V+       LC G H
Sbjct: 128 IKRGLDIKRKELPREEALKFFENK--KEVYKLDIINSLPSDAKISVYEQGEFVDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + +T       +   SSI     R                   L+ +      ++  +  
Sbjct: 186 IPNTALAGAFKL---SSIAGAYWR------------ADASKPMLQRIYGIAFWTEKELEE 230

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM-DALQ 817
           R+ +++EE +K       R+L   +E  +  +      +  +        L+ V+ D L+
Sbjct: 231 RL-KLYEEAKK----RDHRRLGKELELFTIDEQVGPGLIIWLPKGA---ILRQVVEDYLK 282

Query: 818 KKIQSGIIMLVGISKEKKASV 838
           +K ++     V      K+++
Sbjct: 283 EKHRALNYQFVYTPHVGKSTL 303


>gi|85057943|ref|YP_456859.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123738887|sp|Q2NIG3|SYT_AYWBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84790048|gb|ABC65780.1| threonyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 641

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
              +K    +F +  I     L+   +L +  +   +    +NHS  HL+  A++ +   
Sbjct: 30  EHFKKPVAALFNNQPIELDFPLKKNGNLEILTESDPKSLEVLNHSTAHLMAQAVARLYPD 89

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662
            +   G  I  +G  +D+   K   S  +  +IE  ++ I  +N  +    ++ E A   
Sbjct: 90  ALFTVGPAI-KEGFYYDIDFQKHTISEKDFLTIEKVMHQISLENHKITREEISFEKAKKL 148

Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS------- 715
            A         ++ R  ++     G     LC G HV  T  I    I+  S        
Sbjct: 149 FAYNPYKQVLLEKFRDQTISIYRQGEFFD-LCRGVHVIKTNLIKHFKILKISGAYFQGDA 207

Query: 716 IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
               + RI   +   ++A +  +   E+ K 
Sbjct: 208 KNKTLTRIYGTSFFKKQALADYLQLLEERKE 238


>gi|218897336|ref|YP_002445747.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
 gi|218542902|gb|ACK95296.1| threonyl-tRNA synthetase [Bacillus cereus G9842]
          Length = 640

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEIDDSLKLEILEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|157964288|ref|YP_001499112.1| threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
 gi|157844064|gb|ABV84565.1| Threonyl-tRNA synthetase [Rickettsia massiliae MTU5]
          Length = 651

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  + ++  
Sbjct: 87  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPWTTDDLAVIEAKMQELSQ 145

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 146 KNEKVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGNFIDLCRGPHAP 203

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 204 STGVVKHFKLMK---VAGAYWR 222


>gi|295696884|ref|YP_003590122.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
 gi|295412486|gb|ADG06978.1| threonyl-tRNA synthetase [Bacillus tusciae DSM 2912]
          Length = 641

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+  H++  A+S +        G  I  DG  +D    +  T  +L  IE  +  ++ 
Sbjct: 78  YRHTCAHVMAQAVSRLFPGAKFAIGPVI-EDGFYYDFADHE-FTPEDLPKIEQEMERVVK 135

Query: 645 QNLPVVTRIMNREDAIA--SGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           ++LP+   ++ R++A+    G           D      +     G  +  LC G H+ S
Sbjct: 136 EDLPIRREVLGRDEALEMFRGRDDRFKVEIIRDLPPDAVITVYHQGEFTD-LCRGPHLPS 194

Query: 702 TGEIMLLYIVSES-------SIRAGIRRIEAI---TGQRARSHLMGQDEKLKS 744
           TG I    ++S +       S R  + RI A    T ++   +L   +E  K 
Sbjct: 195 TGRIKAFKLLSLAGAYWRGDSNREMLTRIYATAFPTQRQLEEYLRRVEEARKR 247


>gi|58699329|ref|ZP_00374107.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58534152|gb|EAL58373.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 356

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +  +     G  I  DG  +D    +  T+ +L +IE  + +I+ 
Sbjct: 69  IRHDAAHIMAQAVKELFPNTQITIGPTIQ-DGFYYDFATGRTFTTDDLTAIEKKMKEIVK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N   V  +  R+ AI     + +G KY   +     E E+  V+       LC G H  
Sbjct: 128 SNHRFVREVWTRKQAIDFF--SDIGEKYKVDIISSIPEGENLTVYRQGDFIDLCRGPHSP 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI---------TGQRARSHLMGQDEKLKSLAS 747
           STG +    ++    +     R +A          T  R +  L    E LK    
Sbjct: 186 STGRVKAFKLMK---VAGAYWRGDAKGPMLQRIYGTAWRNKDELNAYLECLKEAEK 238


>gi|206580948|ref|YP_002240513.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
 gi|206570006|gb|ACI11782.1| threonyl and alanyl tRNA synthetase domain protein [Klebsiella
           pneumoniae 342]
          Length = 209

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
            +  +  +  D+T F+ + GGQ  D G   G  +   I        G  V H  +    L
Sbjct: 24  EADGRYAIELDRTLFHPQGGGQPADRGWIAGQAVETVIV------RGDSVLH--ILSQAL 75

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + + ID   R+  +  HSA HLL  A   +    V    +   P   R   T   
Sbjct: 76  PLGD-VEMKIDASARQLHARLHSAGHLLGLAGEQLGWQPV---KAHHWPGEGRITFTSRN 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                +  ++   V    AQ+LP      +                      +  V + +
Sbjct: 132 NAALPDASALLAPVKAWQAQDLPRQVTFAD---------------------GLRQVGFGE 170

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              +    CGGTHV+   E+  + +VS+  ++ G
Sbjct: 171 LPAY---PCGGTHVARLAELGDV-VVSQIKMKKG 200


>gi|116626335|ref|YP_828491.1| threonyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076]
 gi|116229497|gb|ABJ88206.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 644

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 16/202 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  HLL  A+  +        G  I  +G  +D     P T  +L+ IE  + +I A
Sbjct: 73  YRHSTAHLLAAAVLELYPETQLGIGPPI-ENGFYYDFDRPAPFTPEDLEKIEKKMWEIQA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + LP    +  +++ +   + A +  +  D            G      C G H+  T +
Sbjct: 132 RALPYERVLTPKDEGLKKYSEAWMKCQLIDERAGEIFTEYTLGPKFIDFCRGPHLPDTSK 191

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I    ++S             I G  A      ++++L+ +      S  ++   ++++ 
Sbjct: 192 IKAFKLLS-------------IAG--AYWKGDEKNKQLQRIYGTAFFSPKDLDAYLKQVE 236

Query: 765 EEYRKLQLIHAKRKLQLNVEDL 786
           E  ++      K     ++++L
Sbjct: 237 EAKKRDHRKLGKELDLFSIQEL 258


>gi|13542113|ref|NP_111801.1| threonyl-tRNA synthetase [Thermoplasma volcanium GSS1]
 gi|22654129|sp|Q978W0|SYT_THEVO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14325544|dbj|BAB60447.1| tRNA synthetase Thr [Thermoplasma volcanium GSS1]
          Length = 660

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 17/219 (7%)

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI--DYQNRRQLSINHSATHLLHH 595
           G R +     KK   +      ++   +  E   V  +  D ++   +   HSA HLL +
Sbjct: 11  GQRYRDAINDKKVIAVKKGDKFLDLDEIAGEDEAVQPVYLDSEDGLYILR-HSAAHLLAN 69

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           A++ +    +   G  +  +G  +D    KPIT  +L  IE+ +  I+ +N+P+   I +
Sbjct: 70  AVTNLFPEALPNTGPVV-ENGFYYDFDM-KPITEEDLSKIEEEMKRIVKENVPIRRMIYS 127

Query: 656 REDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +++ +   +      +  N+ V   S  Y+ G      LC G HV STG I    ++S +
Sbjct: 128 KDELLKIFSKNPYKIRIINENVEGKSSVYQQGNF--VDLCLGPHVPSTGYIKAFKLLSIA 185

Query: 715 SI------RAGIRRIEAIT---GQRARSHLMGQDEKLKS 744
           S          + RI        +  R +L   +E  K 
Sbjct: 186 SAVYKYDESKNLVRIYGTAFPDEKSLRRYLENLEEAKKR 224


>gi|218458422|ref|ZP_03498513.1| class II aminoacyl t-RNA synthetase domain-containing protein
           [Rhizobium etli Kim 5]
          Length = 245

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 92/286 (32%), Gaps = 82/286 (28%)

Query: 43  MVPFKNIFTGQEKPVYQ-AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY 101
           M  +K +F     P Y   V   Q C+R G    DLD +G    H   F MLG FSF   
Sbjct: 1   MQQYKPLF---SDPSYSGTVANSQACLRLG----DLDEIG-DGTHFLHFTMLGLFSFREM 52

Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW 161
               AI   W        L     ++T++ +       W  + G    ++  +   +  W
Sbjct: 53  TVGDAIDF-WLAFLGTLGLAPD--HVTMHPDRLIE---WTPLYG---GRVPIVADAECIW 103

Query: 162 SMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPK 221
           S       G C+E F+  G                 IEI N+V                 
Sbjct: 104 SDGSIS--GYCTE-FYKHG-----------------IEIGNIVN-------------PLG 130

Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281
             ID G G ER+  ++         D  + L +                          +
Sbjct: 131 SCIDVGFGAERLDMIVNGTPP---ADALETLRE--------------------------T 161

Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
              ++  G  P N+ +GYVLR+++RR       L    P     + 
Sbjct: 162 VMTIVESGYRPGNKEQGYVLRKLLRRIHRMGGTL--DHPFFGEEVE 205


>gi|229169303|ref|ZP_04297013.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228614066|gb|EEK71181.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 645

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKP 626
               ++T+D ++   +   HS  HLL  AL  +      + G   +  +G  +D+   + 
Sbjct: 58  GAVSIITLDSEDGLYILR-HSTAHLLAQALKRLYKDVKLELGIGPVIENGFYYDIDMEEA 116

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---- 682
           IT  + K IE  +  I+ +NL +V   + R +A+          +  D +++  +     
Sbjct: 117 ITVEDFKKIEKEMQKIVNENLEIVRHEVPRTEALRRF------EEIGDELKLDLINDLPE 170

Query: 683 ------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
                 YE G      LC G H+ STG+I +  ++S   +     R              
Sbjct: 171 DAVISIYEQGEFFD--LCRGVHLPSTGKIKVFKLLS---VAGAYWR------------GD 213

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             ++ L+ +     V +  +   +  + EE ++       ++L+L
Sbjct: 214 SNNKMLQRIYGTGFVKKAELDEHL-RMLEEAKERDHRKLGKELKL 257


>gi|238922273|ref|YP_002935787.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
 gi|238873945|gb|ACR73653.1| threonyl-tRNA synthetase [Eubacterium eligens ATCC 27750]
          Length = 591

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 65/159 (40%), Gaps = 10/159 (6%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSI 635
            ++ R  ++NHS  H++  A+  +   H       +  +G  +D+     + + + +++I
Sbjct: 5   KEDERLNTLNHSCAHVMAQAVKHLYP-HAKFWVGPVVKEGFYYDIDLGDNVINDDAIEAI 63

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +  I  +   +  R +++E+A+      +        +   ++   D G  +  LC 
Sbjct: 64  EKEMKKICKEGKKIYRREVSKEEALEMFKDDMYKLDLISGLEDGNITVYDQGDFTD-LCR 122

Query: 696 GTHVSSTGEIMLLYIVSESSI-----RAG--IRRIEAIT 727
           G HV +T       +V  S +      +   ++RI  + 
Sbjct: 123 GPHVDNTKLCKNFKLVKYSGVYWKGDASNHVMQRIYGVC 161


>gi|113475159|ref|YP_721220.1| threonyl-tRNA synthetase [Trichodesmium erythraeum IMS101]
 gi|110166207|gb|ABG50747.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Trichodesmium
           erythraeum IMS101]
          Length = 608

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 23/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G  I  +G  +D    +  T A+LK+I+  +  II 
Sbjct: 30  IRHTTSHVMAMAVQKLFPKAQVTIGPWI-ENGFYYDFDTLESFTEADLKAIKKEMVKIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSS 701
           +NLPV+   ++RE+A        +   Y   +       +     G     LC G H+ S
Sbjct: 89  RNLPVIREEVSREEAKRR--IEEIKEPYKLEILEDLEDPITIYHLGEDWWDLCAGPHIES 146

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG--- 758
           T +I     +   ++     R     G   ++ L                +   +     
Sbjct: 147 TKQINP-KAIELETVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLTEYKR 193

Query: 759 -RVEEIWEEYRKLQLIH 774
            + E +   +RKL    
Sbjct: 194 RKEEALKRNHRKLGKEL 210


>gi|146328703|ref|YP_001209437.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
 gi|166223338|sp|A5EVK6|SYT_DICNV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146232173|gb|ABQ13151.1| threonyl-tRNA synthetase [Dichelobacter nodosus VCS1703A]
          Length = 640

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 29/221 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + +  D        I HS  HLL HAL  +        G  I  +G  +D+  
Sbjct: 50  TIACDADVTIITDKDEAGLEIIRHSCAHLLGHALKQLWPQAKMVIGPVI-ENGFYYDIEA 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
               T  +L  +E+ +  + A    V         A           +  +  ++  ++ 
Sbjct: 109 DHRFTPEDLAVLEERMQKLAATGYSVKKEWTPVARAREIFH------ERQEDFKIRLIDD 162

Query: 684 EDGGV---------HSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
            D  V             +C G HV   G+I    +   S            ++RI  + 
Sbjct: 163 FDADVKEVGLYYHQEYVDMCRGPHVPDMGKIKAFKLTKLSGSYWRGDAQAEALQRIYGV- 221

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--EIWEE 766
              A       D+ L   A   K     +   ++   + EE
Sbjct: 222 ---AFRSKKELDDYLTQQAEAEKRDHRKIGKALDLFHLQEE 259


>gi|156740370|ref|YP_001430499.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|156231698|gb|ABU56481.1| threonyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 595

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HSA H++  A+  +        G  I  DG  +D    +P+T  +L+ IE  +  II
Sbjct: 12  RLRHSAAHVMAQAVLELFPEGKIAIGPPI-EDGFYYDFDLPRPLTPDDLEEIEKRMRRII 70

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----------TKYNDRVRVVSVEYEDGGVHSSA 692
           A   P V R+++ ++A A                    +Y ++    +V           
Sbjct: 71  AGKHPFVYRVVDPDEARALFRDQPYKLELIDGLLHGQDEYGEQGSTNTVISTYRHDTFED 130

Query: 693 LCGGTHVSSTGEIML--LYIVSESSIRAGIRR 722
           LC G H+  TG+I      ++S   +     R
Sbjct: 131 LCRGPHLEHTGQIPPDAFKLMS---VAGAYWR 159


>gi|228965357|ref|ZP_04126449.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794347|gb|EEM41861.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 640

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEIDDSLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|15601053|ref|NP_232683.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153817556|ref|ZP_01970223.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227811910|ref|YP_002811920.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229506559|ref|ZP_04396068.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229510645|ref|ZP_04400125.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229517224|ref|ZP_04406669.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229606038|ref|YP_002876742.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254850514|ref|ZP_05239864.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255745914|ref|ZP_05419861.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262163529|ref|ZP_06031275.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|298500133|ref|ZP_07009939.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
 gi|22654144|sp|Q9KMN7|SYT_VIBCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783545|sp|C3LUV8|SYT_VIBCM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|9657684|gb|AAF96196.1| threonyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126511981|gb|EAZ74575.1| threonyl-tRNA synthetase [Vibrio cholerae NCTC 8457]
 gi|227011052|gb|ACP07263.1| threonyl-tRNA synthetase [Vibrio cholerae M66-2]
 gi|229345260|gb|EEO10233.1| threonyl-tRNA synthetase [Vibrio cholerae RC9]
 gi|229353090|gb|EEO18030.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|229356910|gb|EEO21828.1| threonyl-tRNA synthetase [Vibrio cholerae BX 330286]
 gi|229372524|gb|ACQ62946.1| threonyl-tRNA synthetase [Vibrio cholerae MJ-1236]
 gi|254846219|gb|EET24633.1| threonyl-tRNA synthetase [Vibrio cholerae MO10]
 gi|255735668|gb|EET91066.1| threonyl-tRNA synthetase [Vibrio cholera CIRS 101]
 gi|262028096|gb|EEY46755.1| threonyl-tRNA synthetase [Vibrio cholerae INDRE 91/1]
 gi|297542114|gb|EFH78165.1| threonyl-tRNA synthetase [Vibrio cholerae MAK 757]
          Length = 642

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   +I     R
Sbjct: 190 HMGFCQNFKLL---NIAGAYWR 208


>gi|121591402|ref|ZP_01678683.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
 gi|121546739|gb|EAX56913.1| threonyl-tRNA synthetase [Vibrio cholerae 2740-80]
          Length = 642

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   +I     R
Sbjct: 190 HMGFCQNFKLL---NIAGAYWR 208


>gi|260583498|ref|ZP_05851246.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
 gi|260158124|gb|EEW93192.1| threonine--tRNA ligase [Granulicatella elegans ATCC 700633]
          Length = 647

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      +     L  + S+ +           + HS  HLL HAL+ +      
Sbjct: 33  KKALAGKVNGELVDLDQALTEDASIEIVTPDHEDALGILRHSTAHLLAHALTRLYPGIHF 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I   G  +D      +T   L  +E  +  I+ +N P+V R ++R +A+   A  
Sbjct: 93  GVGPAI-ESGFYYDTDMPNQLTEDALPEVEAEMMKIVKENYPIVRREVSRAEALEIFA-- 149

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESS 715
                Y   +     E E   V+       LC G HV STG I +  ++S + 
Sbjct: 150 --NDPYKVELINGLPEDETISVYQQEDFVDLCRGIHVPSTGRIQVFKLLSLAG 200


>gi|258623264|ref|ZP_05718271.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|262173542|ref|ZP_06041219.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
 gi|258584450|gb|EEW09192.1| threonyl-tRNA synthetase [Vibrio mimicus VM573]
 gi|261890900|gb|EEY36887.1| threonyl-tRNA synthetase [Vibrio mimicus MB-451]
          Length = 642

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   +I     R
Sbjct: 190 HMGFCQNFKLL---NIAGAYWR 208


>gi|190571398|ref|YP_001975756.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018797|ref|ZP_03334605.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238055114|sp|B3CMJ4|SYT_WOLPP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|190357670|emb|CAQ55114.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995748|gb|EEB56388.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 633

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +  +     G  I  DG  +D    +  T+ +L +IE  + +II 
Sbjct: 69  IRHDAAHIMAQAVKELFPNTQITIGPTIQ-DGFYYDFATDRTFTTDDLAAIEKKMKEIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N   V  +  R+ AI     + +G +Y   +     E E+  V+       LC G H  
Sbjct: 128 SNHRFVREVWTRKQAIDFF--SDIGERYKVDIVSSIPENENLTVYKQGNFVDLCRGPHSP 185

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 186 STGRVKAFKLMK---VAGAYWR 204


>gi|153004735|ref|YP_001379060.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028308|gb|ABS26076.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 681

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 14/144 (9%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H A H++   +  +        G  I  DG  +D     P T  +L+ IE   N+ IA 
Sbjct: 104 RHDAAHVMASVVQKLYPGTQVTIGPAI-EDGFYYDFARETPFTPEDLEKIEKATNEAIAA 162

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGTH 698
           +LP V   ++ + A+  G    LG KY     V  +                   C G H
Sbjct: 163 DLPFVRDEISMDAAL--GLFEGLGEKYKVE-IVKDIAARGAKTLTLYRHGDWVDFCLGPH 219

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
             ST  I ++ ++S   +     R
Sbjct: 220 GPSTKRIGVVKLLS---VAGAYWR 240


>gi|261212792|ref|ZP_05927076.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
 gi|260837857|gb|EEX64534.1| threonyl-tRNA synthetase [Vibrio sp. RC341]
          Length = 642

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   +I     R
Sbjct: 190 HMGFCQNFKLL---NIAGAYWR 208


>gi|147671507|ref|YP_001215778.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262168212|ref|ZP_06035910.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
 gi|172047342|sp|A5EZ18|SYT_VIBC3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146313890|gb|ABQ18430.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|227014955|gb|ACP11164.1| threonyl-tRNA synthetase [Vibrio cholerae O395]
 gi|262023455|gb|EEY42158.1| threonyl-tRNA synthetase [Vibrio cholerae RC27]
          Length = 642

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   +I     R
Sbjct: 190 HMGFCQNFKLL---NIAGAYWR 208


>gi|170726837|ref|YP_001760863.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
 gi|238688661|sp|B1KG61|SYT_SHEWM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169812184|gb|ACA86768.1| threonyl-tRNA synthetase [Shewanella woodyi ATCC 51908]
          Length = 642

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA   +        G  I  +G  +D+     +T  ++ ++E  +  +  
Sbjct: 71  LRHSCAHLLGHAFKQLWPEAKMAIGPVID-NGFYYDIDLDHKLTQEDIDALEKRMVQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  V  R+ + + A  +  A   G  Y   +   ++  +D            +C G HV
Sbjct: 130 TNYIVEKRVGSWQVARDTFEAR--GETYKMEILDENISKDDQPALYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMKFCQHFKLMS---VAGAYWR 207


>gi|260424668|ref|ZP_05732876.2| threonine--tRNA ligase [Dialister invisus DSM 15470]
 gi|260402758|gb|EEW96305.1| threonine--tRNA ligase [Dialister invisus DSM 15470]
          Length = 647

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 8/164 (4%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
           R  +     +            ++ H+A H++  A+  +        G  I  DG  +D+
Sbjct: 60  RNNITDGTQVEFFTKADKEGLFTLRHTAAHVMAQAIQHLYPGTKFAIGPAID-DGFYYDL 118

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
                 +  +  +IE  +  I   NLP+  +I++R +A+    +     K     D    
Sbjct: 119 ESDHVFSQEDFAAIEKEMAKIAKANLPIEKKILSRNEALEFFRSKNQDYKVILIQDLPED 178

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +     G  +  LC G HV STG++ +  ++   ++     R
Sbjct: 179 AIISTYTQGDFTD-LCRGPHVRSTGKLKVFKLM---AVAGAYWR 218


>gi|183601640|ref|ZP_02963010.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683826|ref|YP_002470209.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190862|ref|YP_002968256.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196268|ref|YP_002969823.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|254783508|sp|B8DUF4|SYT_BIFA0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|183219246|gb|EDT89887.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621476|gb|ACL29633.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249254|gb|ACS46194.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250822|gb|ACS47761.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178601|gb|ADC85847.1| Threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793851|gb|ADG33386.1| threonyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 692

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 34/212 (16%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  +T+D  +   +   HSATH++  A+  +        G  I  +G  +D  
Sbjct: 48  PLHDGDNVESVTLDSPDGTGIMR-HSATHVMAQAVQEVRPDAKLGIGPVI-ENGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-----REDAIASGAAALLGTKYN--DR 675
              P T  +LK+IE ++  II        R+++     RE+A       L+  K +  + 
Sbjct: 106 VKDPFTPDDLKTIEKHMQRIIKSAQRFQRRVVSEEEALREEADEPYKIELIKDKEDALET 165

Query: 676 VRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
              V + +++  ++           S LC G H+ +T  I    +       A       
Sbjct: 166 EAAVDISHKELSMYDNLDREGNVVWSDLCRGPHLPNTRYIKAFKL---ERAAAAYWKGSE 222

Query: 722 ------RIEAITGQRARSHLMGQDEKLKSLAS 747
                 RI  +     +  L     +++  A 
Sbjct: 223 ANPMLQRIYGVA-FPTKDELKAYQTRMEEAAK 253


>gi|90579635|ref|ZP_01235444.1| threonyl-tRNA synthetase [Vibrio angustum S14]
 gi|90439209|gb|EAS64391.1| threonyl-tRNA synthetase [Vibrio angustum S14]
          Length = 643

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLYPDAKMAIGPTID-NGFYYDIDLEQSLTQEDLEVIEKRMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVVKKKVSWQEARDAFDAR--GETYKIEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++S   +     R
Sbjct: 190 HMGFCQNFKLLS---VAGAYWR 208


>gi|313904501|ref|ZP_07837877.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
 gi|313470643|gb|EFR65969.1| threonyl-tRNA synthetase [Eubacterium cellulosolvens 6]
          Length = 591

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 15/179 (8%)

Query: 585 INHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             HS  H+L  A+  + G   V         +GL +D T  + +T+ + K IED + ++I
Sbjct: 10  YRHSMAHILAKAVIELFGKEKVQYAIGPQIENGLYYDFTLPRTLTADDYKMIEDKMREVI 69

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
            +      + + +++A+         T+   +      +     G     LC G HVS++
Sbjct: 70  KRREDWTCKEVTKDEALELFKDQKFKTELIQELPADEKITIYYTGDDYVDLCRGPHVSNS 129

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------QDEKLKSLASFLKVSQG 754
            E+M +      SI     R     G   +  L            +LK    FL+ +  
Sbjct: 130 QELMNVA-FEVRSISGAYWR-----GDETKDQLQRIYVTAFADKNQLKEFKKFLREAAE 182


>gi|121728093|ref|ZP_01681130.1| threonyl-tRNA synthetase [Vibrio cholerae V52]
 gi|121629641|gb|EAX62062.1| threonyl-tRNA synthetase [Vibrio cholerae V52]
          Length = 208

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   +I     R
Sbjct: 190 HMGFCQNFKLL---NIAGAYWR 208


>gi|281424419|ref|ZP_06255332.1| alpha-amylase family protein [Prevotella oris F0302]
 gi|281401688|gb|EFB32519.1| alpha-amylase family protein [Prevotella oris F0302]
          Length = 714

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  ++++    H+A HLL+  +  +     S N + I     +      +  T  + K I
Sbjct: 566 NEHHKKEFPPAHTAEHLLNQLMMRMFHCERSYN-AHIERKKSKMSFILEQKPTRQQEKEI 624

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +N++I +++P+   +++R+          L    ++ +R+V +     G      C 
Sbjct: 625 ERRMNELIQEDMPITYELVDRDHVPEDVKLDRLPDDASEMLRLVHI-----GNFDVCPCL 679

Query: 696 GTHVSSTGEIMLLYIVS 712
           G HV ST +I    ++ 
Sbjct: 680 GKHVRSTSQIGRFELLG 696


>gi|33152811|ref|NP_874164.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
 gi|71153574|sp|Q7VKR9|SYT_HAEDU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33149036|gb|AAP96553.1| threonyl-tRNA synthetase [Haemophilus ducreyi 35000HP]
          Length = 643

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 15/181 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L++IE  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLFPTVKMAIGPTI-ENGFYYDVDLDRTLTQDDLEAIEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV + ++ + A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYNVVKKPVSWQQARDTFEKR--GEPYKIAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V +        +     +     R ++      R +     +K K L  +L         
Sbjct: 187 VPNMRFCQHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLTEYL-TRLEEAAK 241

Query: 759 R 759
           R
Sbjct: 242 R 242


>gi|323142407|ref|ZP_08077233.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413100|gb|EFY03993.1| threonine--tRNA ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 597

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 20/193 (10%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                + +  H+ +H+L  A+  +        G  I  +G  +D     P T  +L ++E
Sbjct: 10  ENKEYRQTYWHTCSHVLAQAMKRLHPDVKLAIGPSID-NGFYYDFDTPAPFTPEDLAALE 68

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             +  I  + L +    + R +A+           Y   +     E      +       
Sbjct: 69  GEMRKICKEKLKLERFELPRAEAVKF--MEEKEEPYKVELINDLPEDAVISFYKQGDFTD 126

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMGQDEKLK 743
           LC G H+ STG I    I   S+  A  R         RI  I    A       D  L+
Sbjct: 127 LCAGPHLDSTGRIKGNAIKLTSATGAYWRGDSNRKMLQRIYGI----AFPKKEELDAYLE 182

Query: 744 SLASFLKVSQGNV 756
             A  LK     +
Sbjct: 183 QQAEALKRDHNKL 195


>gi|229190445|ref|ZP_04317445.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
 gi|228593058|gb|EEK50877.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 10876]
          Length = 640

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRDIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|149919496|ref|ZP_01907976.1| hypothetical protein PPSIR1_10610 [Plesiocystis pacifica SIR-1]
 gi|149819621|gb|EDM79048.1| hypothetical protein PPSIR1_10610 [Plesiocystis pacifica SIR-1]
          Length = 590

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 10/143 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HSA H++  A+  +        G   T DG  +D+     ++  +  +IED +  I 
Sbjct: 25  TLRHSAAHVMADAIKQLWPDAKLAFGPH-TEDGFYYDIQMDHRLSPDDFPAIEDKMKAIA 83

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
               P     ++R+ A A   AA  G  +         E     ++ S     LC G HV
Sbjct: 84  KARHPFEREEVSRDAARALFEAA--GEDFKVETIASIPEDATLTLYRSGDFVDLCRGPHV 141

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
             TG +    ++    +     R
Sbjct: 142 KETGAVRAFKLL---RVAGAYWR 161


>gi|84516459|ref|ZP_01003818.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
 gi|84509495|gb|EAQ05953.1| threonyl-tRNA synthetase [Loktanella vestfoldensis SKA53]
          Length = 648

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I  DG  +D    +P T  +L  IE  + +II +
Sbjct: 75  RHDLAHIMARAVQEIWPDTQVTIGPVI-KDGWYYDFDRKEPFTPEDLGLIEKKMKEIINK 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
              V T I +R  A+        G  Y   +       E            LC G H+ +
Sbjct: 134 RDDVRTEIWDRARAVQYYTDR--GEPYKVELIDSIPGNEPLRMYWHGDWQDLCRGPHLQN 191

Query: 702 TGEI--MLLYIVSESSIRAGIRR------------IEAITGQRARS-HLMGQDEKLKS 744
           TG++      ++S   I     R              A T + A   HL   +E  K 
Sbjct: 192 TGQVPADAFKLMS---IAGAYWRGDSTRPMLQRIYGTAFTNKDALKDHLHRLEEAAKR 246


>gi|326795752|ref|YP_004313572.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
 gi|326546516|gb|ADZ91736.1| threonyl-tRNA synthetase [Marinomonas mediterranea MMB-1]
          Length = 638

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 12/175 (6%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V  K  G+ V    V    +  + ++ L           I HS  HL+ HA+  +  +  
Sbjct: 36  VAGKINGVLVDACEV----ISEDSNVSLVTGRDEEGLEIIRHSFAHLVGHAVKQLYPTAK 91

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D+   +P T  ++ +IE  + ++I ++  VV  +   ++A      
Sbjct: 92  MAIGPVIN-EGFYYDIAFERPFTLDDMAAIEKRIAELIKKDYDVVKTMTPIDEARRQFDE 150

Query: 666 ALLGTKYNDRVRVVSVEY-EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESS 715
              G  Y  ++     E   + G++       +C G HV +T  +    ++  + 
Sbjct: 151 R--GESYKVQLIDDMDESVTEVGLYRHEEYMDMCRGPHVPNTRVLRYFKLMKLAG 203


>gi|229173066|ref|ZP_04300617.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
 gi|228610399|gb|EEK67670.1| Threonyl-tRNA synthetase [Bacillus cereus MM3]
          Length = 639

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 70/177 (39%), Gaps = 15/177 (8%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G +V
Sbjct: 37  KKAVAGKVNDQLYDLRRNIEENAEVEIVTIDSNEGVEIAR-HSAAHILAQAVKRMHG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG-- 663
           +     +  +G  +D+     +   +L  IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLPEIEKEMKKIINENIKIERVEVSREEAKKLFQE 154

Query: 664 -----AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                  ALL    +     +   Y+ G      LC G H+ STG +    +   S 
Sbjct: 155 MNDHLKLALLEAIPSGESVTL---YKQGEF--VDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|197122302|ref|YP_002134253.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
 gi|238689843|sp|B4UAM8|SYT_ANASK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|196172151|gb|ACG73124.1| threonyl-tRNA synthetase [Anaeromyxobacter sp. K]
          Length = 650

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H A H++   +  +        G  I  DG  +D     P T  +L+ IE   N+ I  
Sbjct: 76  RHDAAHVMASVVQKLYPGTQVTIGPAI-EDGFYYDFARETPFTPEDLERIEKATNEAIKA 134

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGTH 698
           +LP V   ++ E A+A      +G +Y     V  +  +                C G H
Sbjct: 135 DLPFVRSEISMEAALALFEG--MGERYKVE-IVKDIAAKGAKTLTLYKHGDWVDFCLGPH 191

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
             STG I ++ ++   ++     R +A      R +     +K K L + L      V  
Sbjct: 192 GPSTGRIGVVKLL---NVAGAYWRGDAKNAMLQRIYGTAFFDK-KELDAHL-AKLEEVKK 246

Query: 759 R 759
           R
Sbjct: 247 R 247


>gi|329927796|ref|ZP_08281857.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
 gi|328938197|gb|EGG34592.1| threonine--tRNA ligase [Paenibacillus sp. HGF5]
          Length = 636

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 6/161 (3%)

Query: 564 ILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDV 621
            LR +  + ++T+D ++       HS  HL+  A+  + GS     G   +  DG  +D+
Sbjct: 51  ELREDAEVSIITLDSED-GLYVYRHSTAHLMAQAVKRLYGSESVHLGVGPVIEDGFYYDM 109

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                IT+ +L +IE  +  I+ ++LP++ + + R++A          T+    +    V
Sbjct: 110 DLGHSITADDLIAIEREMLKIVQEDLPILRKEVGRKEAERIFQDDPYKTELIRELPEDEV 169

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      LC G H+ STG I    ++S   +     R
Sbjct: 170 ISVYEQGEFVDLCRGPHLPSTGRIKAFKLMS---VAGAYWR 207


>gi|220917084|ref|YP_002492388.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254783505|sp|B8J823|SYT_ANAD2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219954938|gb|ACL65322.1| threonyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 650

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H A H++   +  +        G  I  DG  +D     P T  +L+ IE   N+ I  
Sbjct: 76  RHDAAHVMASVVQKLYPGTQVTIGPAI-EDGFYYDFARETPFTPEDLERIEKATNEAIKA 134

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGTH 698
           +LP V   ++ E A+A      +G +Y     V  +  +                C G H
Sbjct: 135 DLPFVRSEISMEAALALFEG--MGERYKVE-IVKDIAAKGAKTLTLYKHGDWVDFCLGPH 191

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
             STG I ++ ++   ++     R +A      R +     +K K L + L      V  
Sbjct: 192 GPSTGRIGVVKLL---NVAGAYWRGDAKNAMLQRIYGTAFFDK-KELDAHL-AKLEEVKK 246

Query: 759 R 759
           R
Sbjct: 247 R 247


>gi|294141074|ref|YP_003557052.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
 gi|293327543|dbj|BAJ02274.1| threonyl-tRNA synthetase [Shewanella violacea DSS12]
          Length = 642

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA   +        G  I  +G  +D+     +T  ++ +++  +  +  
Sbjct: 71  LRHSCAHLLGHAFKQLWPEAKMAIGPVID-NGFYYDIDLEHKLTQEDIDALQKRMTQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  V  ++ + + A  +  A   G  Y   +   ++  +D            +CGG HV
Sbjct: 130 TNYKVEKKVGSWQVARDTFEAR--GETYKMAILDENISQDDQPALYHHEEYVDMCGGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMRFCQNFKLMS---VAGAYWR 207


>gi|167629857|ref|YP_001680356.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
 gi|167592597|gb|ABZ84345.1| threonyl-tRNA synthetase [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      HS++HLL  A+           G  I  +G  +D       T  +L++I
Sbjct: 67  DPEGRE--VYRHSSSHLLAQAVQRRFPGTKLGIGPAI-ENGFYYDFDAEHKFTPEDLEAI 123

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  +  I+  + P+  + ++RE+AI        G  Y   +     E     ++S     
Sbjct: 124 EKEMAHIVKADYPITRQEVSREEAIRFFEER--GEMYKVELVKDLPEDAVISMYSQGDFV 181

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            LC G H+ STG+I    ++   ++     R
Sbjct: 182 DLCAGPHLPSTGQIKAFKLM---NLAGAYWR 209


>gi|88800311|ref|ZP_01115877.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
 gi|88776888|gb|EAR08097.1| threonyl-tRNA synthetase [Reinekea sp. MED297]
          Length = 643

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV     +T  +L  +E  +  +  
Sbjct: 71  IRHSCAHLLGHAIKQLYPDVKMAIGPTI-ENGFYYDVDMEHRLTEDDLAELEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSA----LCGGTHV 699
            N  VV + ++ ++A         G  Y   +   ++ + +  G++       +C G HV
Sbjct: 130 TNYDVVKKSVSWQEAHDVFVNR--GEPYKQEILEQNIAKSDQPGLYHHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        ++    I     R ++   Q  R +     +K K L + L
Sbjct: 188 PNMKFCHHFKLM---RISGAYWRGDSSNKQLQRIYGTAWADK-KQLKAHL 233


>gi|229150586|ref|ZP_04278801.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
 gi|228632895|gb|EEK89509.1| Threonyl-tRNA synthetase [Bacillus cereus m1550]
          Length = 640

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRRIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|330813582|ref|YP_004357821.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486677|gb|AEA81082.1| threonyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 638

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 9/142 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H+   A+  +        G  I  +G  +D    +P T  +L  IE  + +I+ 
Sbjct: 71  LRHDAAHVCAMAVQELFPGTQVTIGPVI-ENGFYYDFAREEPFTDDDLIKIEKKMIEIVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
           +N      + +R+ AI    +  +G  Y   +       ED  ++       LC G H+ 
Sbjct: 130 RNDKTTREVWDRKKAIDHFKS--MGEHYKAEIIDSIPGNEDISIYFHGSWHDLCRGPHLP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           S G I          +     R
Sbjct: 188 SIGRIG--KSFKLMKVAGAYWR 207


>gi|188996057|ref|YP_001930308.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|229558457|sp|B2V6M2|SYT_SULSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188931124|gb|ACD65754.1| threonyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 643

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 21/184 (11%)

Query: 542 QITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +   +   E I +H  I + G    L+ E    L I         + HS  H++  AL 
Sbjct: 34  DVVGGKLNGEIIDIHTPINQSGNLKFLKKEDKESLEI---------LRHSLAHIMAQALK 84

Query: 599 TILGSHVSQNG-SCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            I G      G    T  G  +DV    K +T  +L  IE+ + +II +   +    + R
Sbjct: 85  EIYGDENVHLGIGPTTEHGFYYDVEIEGKSLTDEDLPQIEEKMKEIIKKGYQIERFELPR 144

Query: 657 EDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIV 711
           E+AI           Y  D ++    E E   ++       LC G H+ ST +     ++
Sbjct: 145 EEAIKFFENK--KEIYKIDIIKHNIPEGEPISLYKQGDFVDLCRGPHLPSTDKAGAFKLI 202

Query: 712 SESS 715
           S S 
Sbjct: 203 SVSG 206


>gi|313888403|ref|ZP_07822071.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845600|gb|EFR32993.1| threonine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 636

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 10/140 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H++ +A+  +        G   T  G  +D+         + K+IED + +I  ++
Sbjct: 72  HTASHIMAYAIQELYPDTKFAIGPS-TETGFYYDLDLEHRFVEEDFKAIEDKMKEIAKKD 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
           LPV    ++RE+A+        G  Y   +       E   ++       LC G H+ ST
Sbjct: 131 LPVERIEISREEALKYF--KEKGQDYKVELINDLPADEKITMYKIGDFLDLCKGPHLLST 188

Query: 703 GEIMLLYIVSESSIRAGIRR 722
            +I  + ++S   I     R
Sbjct: 189 KKIKAIKLLS---IAGAYWR 205


>gi|269102906|ref|ZP_06155603.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162804|gb|EEZ41300.1| threonyl-tRNA synthetase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 643

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLYPEAKMAIGPTID-NGFYYDIDLEQSLTQEDLEVIEKRMLELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVVKKKVSWQEARDTFESR--GETYKIEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++S   +     R
Sbjct: 190 HMGFCQNFKLLS---VAGAYWR 208


>gi|222095974|ref|YP_002530031.1| threonyl-tRNA synthetase [Bacillus cereus Q1]
 gi|221240032|gb|ACM12742.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           Q1]
          Length = 639

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEGNAEVEIITIDSNEGVEIAR-HSAAHILAQAIKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  + +II +NL +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEIEMKNIIKENLKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|158523204|ref|YP_001531074.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
 gi|238686905|sp|A9A078|SYT_DESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|158512030|gb|ABW68997.1| threonyl-tRNA synthetase [Desulfococcus oleovorans Hxd3]
          Length = 637

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 6/161 (3%)

Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
              + T+ ++ L           + HSA H++  A+  +        G  +  DG  +D+
Sbjct: 48  SEPIATDAAVRLITTRDPEGLHIMRHSAAHVMAEAVQRVFPDAELTIGPVV-EDGFYYDI 106

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
              +P++      +E  +  I++  +P V + +++ +A+         T+  + +   +V
Sbjct: 107 DM-EPVSEEIFSRVEAEIKKIVSAKIPFVRKEVDKAEALDRYRDQPYKTEILNEIEDDTV 165

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                G  +  LC G HV  TG +  + +     I     R
Sbjct: 166 SLYTNGDFTD-LCRGPHVPHTGFVRAVKLTK---ISGAYWR 202


>gi|262164341|ref|ZP_06032079.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
 gi|262026721|gb|EEY45388.1| threonyl-tRNA synthetase [Vibrio mimicus VM223]
          Length = 642

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 190 HMGFCQNFKLL---NVAGAYWR 208


>gi|229155963|ref|ZP_04284064.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
 gi|228627570|gb|EEK84296.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 4342]
          Length = 639

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIVTIDSNEGVEIAR-HSAAHILAQAIKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLREIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDHLKLELLEAIPSEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|258625495|ref|ZP_05720387.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
 gi|258582201|gb|EEW07058.1| threonyl-tRNA synthetase [Vibrio mimicus VM603]
          Length = 642

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQEDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 190 HMGFCQNFKLL---NVAGAYWR 208


>gi|257865905|ref|ZP_05645558.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257872238|ref|ZP_05651891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
 gi|257799839|gb|EEV28891.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC30]
 gi|257806402|gb|EEV35224.1| threonyl-tRNA synthetase [Enterococcus casseliflavus EC10]
          Length = 646

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 11/180 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      I     +  + ++ +           + HS  HL+  A+  +  S   
Sbjct: 34  KKALAGKVNGQLIDLSRPIEEDATIEIVTPDHEDALGLLRHSTAHLMAQAMRRLYTSIHF 93

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I             PIT+ +L +IE  +  II +NL +  R++ +E+A+   A  
Sbjct: 94  GVGPAIDSGFYYDTDNGENPITAEDLPAIEAEMMKIIKENLAIERRVLTKEEALTLFA-- 151

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                Y   +     + E    +       LC G HV STG I +  ++S   +     R
Sbjct: 152 --EDPYKVELITELPDDETITAYQQGEFVDLCRGPHVPSTGRIQVYKLLS---VAGAYWR 206


>gi|210615498|ref|ZP_03290625.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
 gi|210150347|gb|EEA81356.1| hypothetical protein CLONEX_02841 [Clostridium nexile DSM 1787]
          Length = 657

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 24/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D  H+ P ++ +L++IE  +  II
Sbjct: 72  ALRHTASHVLAEAVKRLYPEAKLAIGPSIDT-GYYYDFEHA-PFSNEDLETIEKEMKKII 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    + R +AIA       G  Y   +     E      +       LC G H+
Sbjct: 130 KEGAKIERFELPRAEAIA--LMEEKGEPYKVELINDLPEDSVISFYRQGEFVDLCAGPHL 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    ++S S                A       ++ L  +       +  +   
Sbjct: 188 MSTKGVKAFKLISSSG---------------AYWRGNENNKMLTRIYGTAYSKKDELKAH 232

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +E + E+ +K       R+++L
Sbjct: 233 MEHL-EDIKKRDHNKLGREMEL 253


>gi|87124051|ref|ZP_01079901.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
 gi|86168620|gb|EAQ69877.1| threonyl-tRNA synthetase [Synechococcus sp. RS9917]
          Length = 612

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 27/258 (10%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            + ++VL    ++ + L I HS +H++  A+  +        G   T  G  +D  +  P
Sbjct: 19  PDAAVVLPKTSESNQLLRIRHSMSHVMAMAVQHLFPQAQVTIGPW-TETGFYYDFDNPDP 77

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV---VSVEY 683
            T A+LK+I   +  II + LP+    ++R++A A   A      Y   +       +  
Sbjct: 78  FTEADLKAIRKEMIKIINRKLPLERIAVSRDEAEAKIKAQ--NEPYKLEILAGLQEPITL 135

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              G     LC G HV +T E+      +  S+     R     G   ++ L        
Sbjct: 136 YTLGEQWWDLCAGPHVDNTSELNP-KAFALESVAGAYWR-----GDETKAQLQRIYGTAW 189

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
                L                EY++ +    +R  +   +DL    I D      +   
Sbjct: 190 ETPEQL---------------AEYQRRKEEALRRDHRRLGKDLDLFSIEDEAGAGLVFWH 234

Query: 804 VDSKELKSVMDALQKKIQ 821
                ++ +++   ++  
Sbjct: 235 PRGARMRLLIEDFWRQAH 252


>gi|42523121|ref|NP_968501.1| hypothetical protein Bd1617 [Bdellovibrio bacteriovorus HD100]
 gi|73919772|sp|Q6MML0|SYT_BDEBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|39575326|emb|CAE79494.1| thrS [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 21/197 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  H++  A+  I        G  I  +G  +D       T    + IE  +++I+++
Sbjct: 78  RHSCAHIMAQAIQDIWPEVKVTIGPVID-NGFYYDFDSPFAFTEEHFEKIEKKMSEIVSK 136

Query: 646 NLPVVTRIMNREDAIA--SGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHVS 700
           +LP+       + AI    G       +  +   +    +V     G     LC G H+ 
Sbjct: 137 DLPIHREDWPIQKAIETFKGMNERFKVELIEDLAKKGETTVGIYFNGTSWFDLCRGPHIQ 196

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG+I    ++S   +     R     G         ++ +L+ + +     + ++   +
Sbjct: 197 STGQIKAFKLLS---VAGAYWR-----GD-------EKNAQLQRVYATAFNDKKDLETYL 241

Query: 761 EEIWEEYRKLQLIHAKR 777
             I E  ++      K 
Sbjct: 242 HNIEEAKKRDHRKLGKE 258


>gi|157691545|ref|YP_001486007.1| threonyl-tRNA synthetase [Bacillus pumilus SAFR-032]
 gi|157680303|gb|ABV61447.1| threonine--tRNA ligase [Bacillus pumilus SAFR-032]
          Length = 643

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 14/201 (6%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AG  + D    I   +R      +K   G      +     L ++  L +          
Sbjct: 23  AGTTVADVASYISPSLR------KKAVAGKINEQMVDVSHQLESDTRLSIVTLDSKEGLE 76

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + H++ H+L  A+  + G +V+     +  +G  +D+  ++ ++  +L +IE  + +II
Sbjct: 77  VLRHTSAHVLAQAVKRLYG-NVTLGIGPVIENGFYYDMKLNQTLSVEDLAAIEKEMENII 135

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDR--VRVVSVEYEDGGVHSSALCGGTHVSS 701
            +N  +  + ++ ++A +            +R         Y+ G      LC G H+ S
Sbjct: 136 NENHLIQRKEISYKEAESMFEHDPYKLDILNRLPSEEAITVYQQGEFID--LCRGPHLPS 193

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG +    +     +     R
Sbjct: 194 TGFVKSFKLT---RVAGAYWR 211


>gi|222056447|ref|YP_002538809.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
 gi|221565736|gb|ACM21708.1| threonyl-tRNA synthetase [Geobacter sp. FRC-32]
          Length = 645

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 28/229 (12%)

Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHH 557
           GEI  +   G +  +           G  + D   +IG G  +  I     + +G  V  
Sbjct: 11  GEITVKLPDGSERTLPR---------GASVYDLAASIGTGLAKAAIAG---RIDGDLVDL 58

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           A V    L     + +  +        I HS +HL+  A+  +        G  I   G 
Sbjct: 59  ATV----LPDGSKVEIITEKSPEALEIIRHSTSHLMAQAVKALFPEAKVTIGPAIET-GF 113

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN---- 673
            +D     P T  +L+ IE+ + ++   NL +  ++++  DAI       LG  Y     
Sbjct: 114 YYDFDVDHPFTPEDLEKIENKMQELAKANLKIERQVLSGADAIRLFGD--LGESYKVELI 171

Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           + +   +V     G     LC G H+ ST  I    + S   I     R
Sbjct: 172 EDLGAATVSLYRQGDFVD-LCRGPHLPSTSHIKAFKLTS---IAGAYWR 216


>gi|239947855|ref|ZP_04699608.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|241116864|ref|XP_002401645.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215493189|gb|EEC02830.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|239922131|gb|EER22155.1| threonyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 635

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFTTDDLAVIEAKMQELSK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEKVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGDFIDLCLGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGFVKHFKLMK---VAGAYWR 206


>gi|52143093|ref|YP_083736.1| threonyl-tRNA synthetase [Bacillus cereus E33L]
 gi|51976562|gb|AAU18112.1| threonine--tRNA ligase (threonyl-tRNA synthetase) [Bacillus cereus
           E33L]
          Length = 639

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 23/215 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLLSSVNVEDLRKIEKEMKNIIKENVKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             +  +    +     + E   ++       LC G H+ STG +    +   S   A  R
Sbjct: 153 QEMNDRLKLELLEAIPDEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG--AYWR 210

Query: 722 ---------RIEAIT--GQRAR-SHLMGQDEKLKS 744
                    RI  +    Q+A   +L   +E  K 
Sbjct: 211 GDSNNQVLQRIYGVAFSSQKALEEYLHFVEEAAKR 245


>gi|241668765|ref|ZP_04756343.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877296|ref|ZP_05250006.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843317|gb|EET21731.1| threonine-tRNA ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 635

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL +A+  +  +     G  I  +G  +D +  + I  A+L +IE  + +I  
Sbjct: 71  LRHSCAHLLANAVKELYPNTEVTIGPVID-NGFYYDFSFKETIGEADLANIEKRMKEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           + + +  R++++EDAIA   A   G  Y   +       +   +++      LC G HV 
Sbjct: 130 KGISISYRVVSKEDAIAFFKAQ--GENYKVDIIESIPADQQIKIYTQGDFSDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST  I    +   + 
Sbjct: 188 STAAIKAFKLTKLAG 202


>gi|261406470|ref|YP_003242711.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
 gi|261282933|gb|ACX64904.1| threonyl-tRNA synthetase [Paenibacillus sp. Y412MC10]
          Length = 636

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 564 ILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDV 621
            LR +  + ++T+D ++       HS  HL+  A+  + GS     G   +  DG  +D+
Sbjct: 51  ELREDAEVSIITLDSED-GLYVYRHSTAHLMAQAVKRLYGSESVHLGVGPVIEDGFYYDM 109

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                IT+ +L +IE  +  I+ ++LP++ + + R++A           +    +    V
Sbjct: 110 DLGHSITADDLITIEREMQKIVQEDLPILRKEVGRKEAERIFQDDPYKMELIRELPEDEV 169

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      LC G H+ STG I    ++S   +     R
Sbjct: 170 ISVYEQGEFVDLCRGPHLPSTGRIKAFKLMS---VAGAYWR 207


>gi|15892219|ref|NP_359933.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
 gi|22654126|sp|Q92IX4|SYT_RICCN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|15619354|gb|AAL02834.1| threonyl-tRNA synthetase [Rickettsia conorii str. Malish 7]
          Length = 635

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFTTDDLAVIEAKMQELSQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEQVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGVVKHFKLMK---VAGAYWR 206


>gi|157375257|ref|YP_001473857.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
 gi|189083624|sp|A8FV56|SYT_SHESH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157317631|gb|ABV36729.1| threonyl-tRNA synthetase [Shewanella sediminis HAW-EB3]
          Length = 642

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA   +        G  I  +G  +D+     +T  ++ +++  +  +  
Sbjct: 71  LRHSCAHLLGHAFKQLWPEAKMAIGPVID-NGFYYDIDLDHKLTQEDIDALQKRMTQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  V  R+ + + A  +  A   G  Y   V   ++  +D            +C G HV
Sbjct: 130 TNYKVEKRVGSWQVARDTFEAR--GETYKMEVLDENISKDDQPALYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMKFCQNFKLMS---VAGAYWR 207


>gi|254362299|ref|ZP_04978411.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
 gi|153093879|gb|EDN74807.1| threonine--tRNA ligase [Mannheimia haemolytica PHL213]
          Length = 643

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 14/171 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL H++  +        G  I  +G  +D+   + +T  +L ++E  + ++  
Sbjct: 71  IRHSTAHLLGHSIKQLFPDVKMAIGPTI-ENGFYYDIDLDRSLTQEDLDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN------DRVRVVSVEYEDGGVHSSALCGGTH 698
            N  VV R ++ ++A  +      G  Y       +  R  +        +   +C G H
Sbjct: 130 TNYDVVKRPVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHEEYID-MCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           V +        +     +     R ++      R +     +K K LA +L
Sbjct: 187 VPNMRFCHHFKL---QKVAGAYWRGDSKNKMLQRIYGTAWADK-KQLAEYL 233


>gi|229586468|ref|YP_002844969.1| threonyl-tRNA synthetase [Rickettsia africae ESF-5]
 gi|259516664|sp|C3PMR6|SYT_RICAE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|228021518|gb|ACP53226.1| Threonyl-tRNA synthetase [Rickettsia africae ESF-5]
          Length = 635

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFTTDDLAVIEAKMQELSQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEQVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGVVKHFKLMK---VAGAYWR 206


>gi|295397484|ref|ZP_06807567.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
 gi|294974284|gb|EFG50028.1| threonine--tRNA ligase [Aerococcus viridans ATCC 11563]
          Length = 656

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I   G  +D    K IT  +L  IE  +  I+ 
Sbjct: 85  LRHSTAHLMAQAMKRLYPGIKFGVGPAIET-GYYYDTDQEKQITEEDLPVIEAEMAKIVK 143

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N P+  R + R +A    A      +Y   +     E E   V+S      LC G HV 
Sbjct: 144 ENYPIERREVTRAEANEIFA----DDEYKLEIIADLPEDETLTVYSQGEFTDLCRGIHVP 199

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG I    ++S   +     R
Sbjct: 200 STGYIKEFKLLS---VAGAYWR 218


>gi|50952758|gb|AAT90291.1| putative threonyl-tRNA synthetase [uncultured proteobacterium
           eBACred25D05]
          Length = 650

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 19/181 (10%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    + H   H++  A+  I        G  I   G  +D  H +P T  +L  IE  +
Sbjct: 69  RAIELVRHDLAHIMARAVQEIWPKVKVTIGPVIN-HGWYYDFDHEEPFTPEDLGKIERKM 127

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCG 695
            +II     V T + +RE AI    A      Y   +     E ++  ++       LC 
Sbjct: 128 REIINLRDVVRTELWDREKAIEYYTAK--KEPYKIELIDAIPENDNIRMYWHGDWQDLCR 185

Query: 696 GTHVSSTGEI--MLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLK 743
           G H  +T ++      ++S +       S R  ++RI     +  +  R HL   +E  K
Sbjct: 186 GPHFQNTAQVPADAFKLMSVAGAYWRGDSNRQMLQRIYGVAFLNKENLREHLNMLEEAAK 245

Query: 744 S 744
            
Sbjct: 246 R 246


>gi|148256517|ref|YP_001241102.1| threonyl-tRNA synthetase [Bradyrhizobium sp. BTAi1]
 gi|146408690|gb|ABQ37196.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Bradyrhizobium
           sp. BTAi1]
          Length = 688

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 20/189 (10%)

Query: 575 IDYQN-RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D  + R    I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  
Sbjct: 92  VDRDDPRALELIRHDCAHVLAEAVQSLWPGTQVTIGPVI-ENGFYYDFFRNEPFTPEDFA 150

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
           +IE  + +II ++ P    + +RE           G  +   +       E   ++S   
Sbjct: 151 AIEKKMREIIGRDKPFTKEVWDRE--KTKQVFRDKGEAFKVELVDAIPGDEPIKIYSQGD 208

Query: 692 --ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR-------IEAITGQRARSHLMGQDEK 741
              LC G H++STG+I     ++    +     R       +  I G  A +     D  
Sbjct: 209 WFDLCRGPHMTSTGKIGNAFKLMK---VAGAYWRGDSNNPMLTRIYGT-AFARQEQLDAY 264

Query: 742 LKSLASFLK 750
           LK +    K
Sbjct: 265 LKQIEEAEK 273


>gi|160894708|ref|ZP_02075483.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
 gi|156863642|gb|EDO57073.1| hypothetical protein CLOL250_02259 [Clostridium sp. L2-50]
          Length = 591

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 60/155 (38%), Gaps = 10/155 (6%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNV 639
           R  ++NHS  H++  A+  +   H       +  +G  +D+     + + + + +IE  +
Sbjct: 9   RLNTLNHSCAHVMAQAVKHLYP-HAKFWVGPVVKEGFYYDIDLGDDVVNDDVIAAIEKEM 67

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I  ++  +  R + + +A+             + +   ++   D G  +  LC G HV
Sbjct: 68  KKICKESKKIYRREVTKAEALEMFKDDFYKLDLIEGLEDGNITVYDQGDFTD-LCRGPHV 126

Query: 700 SSTGEIMLLYIVSESSI-----RAG--IRRIEAIT 727
            +T       +V  S +          ++RI  + 
Sbjct: 127 DNTKLCKNFKLVKYSGVYWKGDAKNHVMQRIYGVC 161


>gi|34580760|ref|ZP_00142240.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
 gi|28262145|gb|EAA25649.1| threonyl-tRNA synthetase [Rickettsia sibirica 246]
          Length = 635

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFTTDDLAVIEAKMQELSQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEQVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGVVKHFKLMK---VAGAYWR 206


>gi|323493467|ref|ZP_08098589.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
 gi|323312290|gb|EGA65432.1| threonyl-tRNA synthetase [Vibrio brasiliensis LMG 20546]
          Length = 642

 Score = 71.3 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 12/152 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D  +  ++   HS  HLL HA+  +        G  I  +G  +D+     +T  +L+ I
Sbjct: 64  DEDDGLEIVR-HSCAHLLGHAIKQLFPEAKMAIGPTID-NGFYYDIDLEHSLTQEDLEKI 121

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA-- 692
           E  + ++      V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++     
Sbjct: 122 EKRMKELAKTKYQVIKKKVSWQEARDAFEAR--GETYKMEILDENVARDDRPGLYHHEEY 179

Query: 693 --LCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             +C G HV   G      ++   ++     R
Sbjct: 180 IDMCRGPHVPHMGFCQHFTLL---NVAGAYWR 208


>gi|313899489|ref|ZP_07832999.1| threonine--tRNA ligase [Clostridium sp. HGF2]
 gi|312955777|gb|EFR37435.1| threonine--tRNA ligase [Clostridium sp. HGF2]
          Length = 579

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 12/182 (6%)

Query: 575 IDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-L 632
           ID +   +LS  NHS  H++  A+  +        G  I+ +G  +D+     +   E L
Sbjct: 4   IDIKEHEELSRLNHSCAHMMAQAVKRLYPQAKFWVGPVIS-EGFYYDIDLGDEVIKEEDL 62

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE  +  I      +V + +++E+A+               +   ++     G     
Sbjct: 63  AKIEKEMKKIAKDGKRIVRKEISKEEALEMFQNDPYKIDLISDLEDGTITCYQQGEFID- 121

Query: 693 LCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           LC G HV +  ++    ++  S            ++RI  I    A   L      L+  
Sbjct: 122 LCRGPHVDTVKQLKNFKLLKHSGAYWKGDASNKMLQRIYGICFPTA-EELEDHLHLLEEA 180

Query: 746 AS 747
             
Sbjct: 181 KK 182


>gi|218282135|ref|ZP_03488434.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
 gi|218216861|gb|EEC90399.1| hypothetical protein EUBIFOR_01014 [Eubacterium biforme DSM 3989]
          Length = 587

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIE 636
           +N     +NHS  H++  A+  +  +     G  I+ +G  +D+      +   +L  IE
Sbjct: 13  ENEHLSMLNHSCAHMMAQAVKRLYPNAKFWVGPVIS-EGFYYDMDLGDVKLKEEDLAKIE 71

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             +  I      +V   +++EDA+             + +   ++     G  +  LC G
Sbjct: 72  KEMKKIAKDGKRIVREEISKEDALEMFKDDPYKIDLINGLEDGNITIYRQGEFAD-LCRG 130

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV +        ++  S                A       ++ L+ +      ++  +
Sbjct: 131 PHVETVKMCKNFKLLKHSG---------------AYWKGDANNKMLQRVYGICFDTKEEL 175

Query: 757 VGRVEEIWEEYRKLQLIHAKR 777
              +E + E  ++      K 
Sbjct: 176 EAHLEALEEAKKRDHKKLGKE 196


>gi|304415438|ref|ZP_07396087.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
 gi|304282702|gb|EFL91216.1| threonyl-tRNA synthetase [Candidatus Regiella insecticola LSR1]
          Length = 652

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV    P+T   L  +E  ++D+ +
Sbjct: 71  IRHSCAHLLGHAIKQLWPDTKMAIGPVI-ENGFYYDVDLQHPLTENHLALLEKRMHDLAS 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  V+ + ++ ++A  +  A   G  Y   +   ++  +D            +C G HV
Sbjct: 130 SNYDVIKKKVSWQEARDAFLAR--GEDYKTLILDENISRDDHPALYHHQEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     I     R
Sbjct: 188 PNMRFCHHFKL---QKISGAYWR 207


>gi|293395381|ref|ZP_06639665.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422065|gb|EFE95310.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 209

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 75/215 (34%), Gaps = 37/215 (17%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A+      VV D T F+ + GGQ  D+G   G      +  ++ + +   V H I     
Sbjct: 23  ALDDGNYAVVLDATLFHPQGGGQPSDSGWLNG------VPLLRLQQQDEQVLHVIDRPLP 76

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     + LTID   R   +  HSA H L   L    G       +   P   R      
Sbjct: 77  LGP---VTLTIDPAQRALHARWHSAGH-LIGGLGERQG--WQPVKAHHWPGEGRITFAPG 130

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
               + E   ++  +  +IA++LP V      + A         G             Y 
Sbjct: 131 SGAKTVEPAWLQAELAQLIARDLPRV------QQAENGMRKVGFGE---------LPAYG 175

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
                    CGGTHV+S  E+  + I +   ++ G
Sbjct: 176 ---------CGGTHVASLAELGQVQITAV-KMKKG 200


>gi|253700848|ref|YP_003022037.1| threonyl-tRNA synthetase [Geobacter sp. M21]
 gi|259516486|sp|C6DYJ5|SYT_GEOSM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|251775698|gb|ACT18279.1| threonyl-tRNA synthetase [Geobacter sp. M21]
          Length = 636

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 17/203 (8%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AG  + D   +IG G+       +    G    + +     L     + +  +       
Sbjct: 18  AGASIFDLAASIGAGLA------KAAIAGKIDGNLVDLNTPLADGARVEIVTEKSPEALE 71

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS +HL+  A+  +        G  I   G  +D     P T  +L+ IE+ + ++ 
Sbjct: 72  IIRHSTSHLMAQAVKALFPQAKVTIGPAIET-GFYYDFDVDHPFTPEDLEKIEEKMRELA 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             +L +  R +   DAIA      +G  Y   + +  +  +   ++S      LC G H+
Sbjct: 131 KADLKIERRELTSADAIALF--KGMGEDYKVEL-IEDLGADKVSLYSQGDFVDLCRGPHL 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
             T  I    + S   I     R
Sbjct: 188 PKTSYIKAFKLTS---IAGAYWR 207


>gi|289523104|ref|ZP_06439958.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503647|gb|EFD24811.1| threonine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 624

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 90/238 (37%), Gaps = 28/238 (11%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + ID     ++   HS +HL+  A+  +        G  I  +G  +D+     IT  +L
Sbjct: 48  VEIDSPEGIEILR-HSTSHLMAQAVYRLYHGTKYGVGPAI-ENGFYYDMDVPTTITEDDL 105

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
             IE+ +  I A+ +P    I+++++AI  G     G  Y   + +  +E +   ++   
Sbjct: 106 PKIEEEMKKIAAEAIPFERLIVSKDEAI--GIFKERGDTYKLEL-IDGIEDDTLSLYKVG 162

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
               LC G HV +T  +    ++S   +     R               ++  L  +   
Sbjct: 163 EFIDLCRGPHVPNTSYLKHFKLLS---VAGAYWR------------GDERNPMLTRIYGT 207

Query: 749 LKVSQGNVVGRVEEIWE----EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802
              ++ +++  + ++ E    ++R+L        +Q             V  ++ ++ 
Sbjct: 208 AFPTEEDLLAYLAKVEEAKRRDHRRLGKELDIFSMQSEAPGFPFFHPKGVVVLNVLVD 265


>gi|262403446|ref|ZP_06080004.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
 gi|262349950|gb|EEY99085.1| threonyl-tRNA synthetase [Vibrio sp. RC586]
          Length = 642

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +  +     G  I   G  +D+   + ++  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPNAKMAIGPTID-SGFYYDIDLEQSLSQDDLEKIEARMVELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  +   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYAVVKKKVSWQEARDTFESR--GESYKIEILDENVARDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   +I     R
Sbjct: 190 HMGFCQNFKLL---NIAGAYWR 208


>gi|302121711|gb|ADK92877.1| threonyl-tRNA synthetase [Hypericum perforatum]
          Length = 721

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 16/206 (7%)

Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +   + TE  +VL  +  + R L I H+  H++  A+  +        G  I  +G  +D
Sbjct: 119 KPEPVLTEERIVLPTNQSSDRLLKIRHTCAHVMAMAVQKLYPDAKVTIGPWI-ENGFYYD 177

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYN 673
               +P+T  ELK I+  ++ II +NLP+V   ++R++A              +L +   
Sbjct: 178 FDM-EPLTDKELKRIKKEMDRIIGRNLPLVREEVSRDEAQRRIMSVNEPYKMEILDSIKE 236

Query: 674 DRVRVVSVEYED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
           + + +  +          G     LC G HV +TG I     V   S+     R +    
Sbjct: 237 EPITIYHIAACRFISLFLGDEWWDLCAGPHVETTGIIDR-KAVELESVAGAYWRGDEKNQ 295

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQG 754
              R +    + + + L ++L   + 
Sbjct: 296 MLQRIYGTAWESE-EQLKAYLHFKEE 320


>gi|322419731|ref|YP_004198954.1| threonyl-tRNA synthetase [Geobacter sp. M18]
 gi|320126118|gb|ADW13678.1| threonyl-tRNA synthetase [Geobacter sp. M18]
          Length = 636

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 96/300 (32%), Gaps = 37/300 (12%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AG  + D   +IG G+       +    G    + +     L     + +  +       
Sbjct: 18  AGASIFDLAASIGAGLA------KAAIAGKIDGNLVDLNTPLFDGARVEIVTEKSPEALE 71

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS +HL+  A+  +        G  I   G  +D     P T  +L+ IE+ + ++ 
Sbjct: 72  IIRHSTSHLMAQAVKALFPQAKVTIGPAIET-GFYYDFDVDHPFTPEDLEKIEEKMRELA 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR----VVSVEYEDGGVHSSALCGGTHV 699
             +L +    ++  DAI       +G  Y   +        V     G  S  LC G H+
Sbjct: 131 KADLKIERSELSSADAIELF--RKMGEDYKVELIQDLGADKVSLYTQGDFSD-LCRGPHL 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T       + S   I     R               +   L+ +       +  +   
Sbjct: 188 PKTSGCKAFKLTS---IAGAYWR------------GDEKRAMLQRVYGTAFADKKELDAY 232

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
           +  I E  ++       RKL   ++  S +       +           L+++++  ++K
Sbjct: 233 LARIEEAKKRDH-----RKLGKELDLFSFNDEVGAGLVIWHPKGA---MLRTILEDFERK 284


>gi|218709221|ref|YP_002416842.1| threonyl-tRNA synthetase [Vibrio splendidus LGP32]
 gi|218322240|emb|CAV18357.1| Threonyl-tRNA synthetase [Vibrio splendidus LGP32]
          Length = 655

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+     +T  +L+ IE  + ++   
Sbjct: 86  RHSCAHLLGHAIKQLFPEAKMAIGPTID-NGFYYDIDLEHSLTQEDLEKIEKRMKELAKT 144

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 145 KYQVVKKKVSWQEARDAFEAR--GETYKIEILDENVSKDDRPGLYHHEEYIDMCRGPHVP 202

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 203 HMGFCQHFTLL---NVAGAYWR 221


>gi|229196601|ref|ZP_04323345.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
 gi|228586957|gb|EEK45031.1| Threonyl-tRNA synthetase [Bacillus cereus m1293]
          Length = 639

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++T+D     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEGNAEVEIITLDSNEGVEIAR-HSAAHILAQAIKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLREIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|242242946|ref|ZP_04797391.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
 gi|242233547|gb|EES35859.1| threonyl-tRNA synthetase [Staphylococcus epidermidis W23144]
          Length = 645

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L  + ++ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTRPLEQDGTIEIITPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D      ++S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVI-EGGFYYDFDMDDKVSSDDFDKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +V  ++++E+A            Y   +     + E   +++      LC G HV 
Sbjct: 132 ENHKIVREVVSKEEAKDFF----KDDPYKLELIDAIPDDESVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|182419388|ref|ZP_02950640.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237666667|ref|ZP_04526652.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376719|gb|EDT74291.1| threonyl-tRNA synthetase [Clostridium butyricum 5521]
 gi|237657866|gb|EEP55421.1| threonine--tRNA ligase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 643

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 99/273 (36%), Gaps = 33/273 (12%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRR 581
           EAG  + D   +I +G+       +    G         R I+  ++ L + T D Q  +
Sbjct: 15  EAGVSVLDIAKSISEGLA------RNAFCGTINGKVCDLRTIVNEDVELSICTFDSQEGK 68

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                HS +H+L +A+  +        G  I   G  +D       TSA+L+ +E  +  
Sbjct: 69  DAVR-HSISHVLAYAVKRLFPETKLAIGPSIAT-GFYYDFDRDTAFTSADLEKLEAEMKK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGT 697
           II +N  +    + R++A+      +    Y   +     E E    +     + LC G 
Sbjct: 127 IIKENPSIEKFELPRDEALEL----MKDEPYKVELINDLPEDEIISFYKIGDFTDLCAGP 182

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV S   I  + +       AG           A      +++ L  +     + +  + 
Sbjct: 183 HVMSLKNIKAIKLTR----SAG-----------AYWKGNEKNKMLTRIYGTAFLKKAELD 227

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             +E + EE +K       R+L+L   D    +
Sbjct: 228 EFLEAL-EEAKKRDHNKLGRELKLFTTDEKVGQ 259


>gi|27380648|ref|NP_772177.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 gi|27353813|dbj|BAC50802.1| threonyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 723

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  + L      R    I H   H+L  A+ T+        G  I  +G  +D   
Sbjct: 118 PIEADAKIELINRDDPRALELIRHDCAHVLAEAVQTLWPGTQVTIGPVI-ENGFYYDFFR 176

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           ++P T  +  +IE  + +IIA++ P    + +RE           G  +   +       
Sbjct: 177 NEPFTPEDFAAIEKKMREIIARDKPFTKEVWDRE--KTKQVFRDKGEAFKVELVDAIPGN 234

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           E   ++       LC G H++STG++     ++    +     R
Sbjct: 235 EPIKIYYQGDWFDLCRGPHMTSTGKVGNAFKLMK---VAGAYWR 275


>gi|255262353|ref|ZP_05341695.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
 gi|255104688|gb|EET47362.1| threonyl-tRNA synthetase [Thalassiobium sp. R2A62]
          Length = 649

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 19/175 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I  DG  +D   ++P T  +L  IE  + +II  
Sbjct: 76  RHDLAHIMARAVQEIWPDVQVTIGPVI-KDGWYYDFDRAEPFTPEDLGLIEKKMKEIINL 134

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
              V T + +R  A+     A  G  Y   +       E            LC G H+ +
Sbjct: 135 RDEVRTEVWDRARAVKHYEDA--GEPYKVELIDAIPGDEPLRMYWHGDWQDLCRGPHLQN 192

Query: 702 TGEI--MLLYIVSESSI-------RAGIRRIEAIT---GQRARSHLMGQDEKLKS 744
           TG++      ++S +         RA ++RI  +     +  + HL   +E  K 
Sbjct: 193 TGQVPADAFKLMSVAGAYWRGDSDRAMLQRIYGVAFTNKEGLKKHLHMLEEAAKR 247


>gi|242556277|pdb|2ZVF|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556278|pdb|2ZVF|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556279|pdb|2ZVF|C Chain C, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556280|pdb|2ZVF|D Chain D, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556281|pdb|2ZVF|E Chain E, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556282|pdb|2ZVF|F Chain F, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556283|pdb|2ZVF|G Chain G, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
 gi|242556284|pdb|2ZVF|H Chain H, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
           Synthetase C-Terminal Dimerization Domain
          Length = 171

 Score = 71.3 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 73/176 (41%), Gaps = 14/176 (7%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK-----LQLN 782
           G+ A   +   +  L+  +S L+V    +   VE  +EE++  +    + K     L  +
Sbjct: 2   GEAAIEAVEEXERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWAD 61

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           +      +      ++ ++ + D + L+ + + L +K   G +  +    E K  V+   
Sbjct: 62  ILXERAEEFDSXKVVAEVV-DADXQALQKLAERLAEK---GAVGCLXAKGEGKVFVVTFS 117

Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +    +++A +L R   + +  G GGGR  +AQ         ++ +  +  FL +
Sbjct: 118 GQ----KYDARELLREIGR-VAKGSGGGRKDVAQGAVQQLLDREEXLDVIFRFLSE 168


>gi|268608298|ref|ZP_06142025.1| threonyl-tRNA synthetase [Ruminococcus flavefaciens FD-1]
          Length = 646

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 21/181 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+H+L  A+  +  +     G  I  +G  +D    KP T AEL+ IE  +  I+ ++
Sbjct: 73  HTASHILAQAVKRLYPNTKLAIGPAID-NGFYYDFDLEKPFTPAELEKIEAEMKKIVKED 131

Query: 647 LPVVTRIMNREDAIAS------GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           L +    ++  DAIA            L  ++ D+   +S  Y+ G      LC G H+ 
Sbjct: 132 LALEQFELSPADAIAKLKEMDEPYKVELCEEHADKGEPISF-YKQGEFTD--LCAGPHLM 188

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIEAITGQRA--RSHLMG--QDEKLKSLASFL 749
           +T  +    ++S +            + R+ AI   +A      +   ++ KL+      
Sbjct: 189 TTAPVKAFKLLSCTGAYWRGNENNKVLSRVYAIAFPKASQLDEYLKMIEEAKLRDHKKLG 248

Query: 750 K 750
           K
Sbjct: 249 K 249


>gi|254419068|ref|ZP_05032792.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
 gi|196185245|gb|EDX80221.1| threonyl-tRNA synthetase [Brevundimonas sp. BAL3]
          Length = 642

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 21/198 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H   H+L  A+ T+        G  I  DG  +D    +P ++ +  +IE  +  I+
Sbjct: 70  TIRHDTAHVLAEAVQTLFPGTQVTIGPAI-EDGFYYDFFRDEPFSTDDFAAIEKEMGRIV 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            ++      + +R++AI    A   G K+   +     E E   ++       LC G H 
Sbjct: 129 DRDAKFEREVWDRDEAIVFFEAR--GEKFKAELIKDLPENETITLYKQGDWIDLCRGPHF 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +        + +     R               + E+L+ +      ++ ++   
Sbjct: 187 PSTRHVG--KAFKLTKLAGAYWR------------GDSKREQLQRIYGTAWATKEDLDAY 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           ++ + E  ++      K 
Sbjct: 233 LQRLEEAEKRDHRKVGKA 250


>gi|70725135|ref|YP_252049.1| threonyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435]
 gi|68445859|dbj|BAE03443.1| threonyl-tRNA synthetase 2 (Threonine--tRNA ligase) [Staphylococcus
           haemolyticus JCSC1435]
          Length = 638

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 10/170 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H+L  AL+ +        G  I   G  +D+   + I+ A+L  IE  +  I +
Sbjct: 75  MRHSAAHVLAQALTRLYPDVKLTIGPVI-EHGFYYDIDLDESISEADLNKIEKEMKKIHS 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NL    + ++  +A           +  +  +   +     G     LC G HV ST  
Sbjct: 134 ENLKFERQNLSYAEAKNIFKDNPYKLELIEEHKDDQLSLYQQGEFID-LCVGPHVPSTKF 192

Query: 705 IMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +    +   S            ++RI  +   R++  L    E L+    
Sbjct: 193 VNHFKLTKVSGAYWRGNSDNKMLQRIYGVA-FRSKDQLDDYFEFLREAEE 241


>gi|308272327|emb|CBX28933.1| Threonyl-tRNA synthetase [uncultured Desulfobacterium sp.]
          Length = 637

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 76/191 (39%), Gaps = 13/191 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           I+  +  + L      +    + HSA H++  A+  I        G  +  DG  +D+  
Sbjct: 50  IISDDSKVRLVTASDEKALEILRHSAAHVMAQAILHIYKDAKLTIGPVV-EDGFYYDIDM 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +P++  +   IE  +  II+  +P   +++++E+A+          +    +   ++  
Sbjct: 109 -EPVSREDFGKIEAEIKKIISAKIPFKRKLVSKEEALKFYKDEPYKLEIISELEDGTISL 167

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIE---AITGQRARS 733
            + G  +  LC G H+  TG I  + +   S         +A ++RI      T +    
Sbjct: 168 YEQGDFTD-LCRGPHLPHTGFIKAIKMTKVSGAYWRADQKKAQLQRIYGTAFYTKKELDD 226

Query: 734 HLMGQDEKLKS 744
           +L   +E  K 
Sbjct: 227 YLHFIEEAKKR 237


>gi|282879569|ref|ZP_06288300.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306517|gb|EFA98546.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella timonensis CRIS 5C-B1]
          Length = 149

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           +        H+A HLL+  ++   G   S N               SKP   AE K IE 
Sbjct: 3   EREVSFPPAHTAEHLLNQLMTRKFGCKRSDNAHIERKKSKMTFRLESKPDRHAE-KEIET 61

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +N++I Q+LP+    ++R+      +   L     D +R+  +     G +    C G 
Sbjct: 62  RMNELIQQDLPITFEEVDRQHLPEGVSLERLPANVPDLIRICRI-----GDYDICPCIGK 116

Query: 698 HVSSTGEIMLLYIVS 712
           HV ST +I    ++ 
Sbjct: 117 HVRSTRQIGKFELLG 131


>gi|254503680|ref|ZP_05115831.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
 gi|222439751|gb|EEE46430.1| threonyl-tRNA synthetase [Labrenzia alexandrii DFL-11]
          Length = 703

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 22/192 (11%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + T+ ++ +      R    I H A H++  A+  I        G  I  +G  +D   
Sbjct: 97  PIDTDANIEIVTRDDPRALELIRHDAAHVMAEAVQEIWPGTQVTIGPVI-ENGFYYDFKR 155

Query: 624 SKPITSA-------ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
             P T         +L  IE  + +IIA+       +  R++A    AA   G  Y   +
Sbjct: 156 VHPDTKDNWPFTQDDLPVIEKKMREIIARGAQFTKEVWTRDEAKTYFAAK--GEDYKVEL 213

Query: 677 RVVSVEYEDGGVHSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRI----EAIT 727
                E +D  ++       LC G H+ ST +I     ++    +     R     E +T
Sbjct: 214 IDAIPEDQDLKIYKQGQWLDLCRGPHMVSTKQIGDAFKLMK---VAGAYWRGDSNNEMLT 270

Query: 728 GQRARSHLMGQD 739
              A +    ++
Sbjct: 271 RIYATAWHNEKE 282


>gi|260777881|ref|ZP_05886774.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605894|gb|EEX32179.1| threonyl-tRNA synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 642

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+     +T  +L  IE  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLFPEAKMAIGPTID-NGFYYDIDLEHSLTQEDLDKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVIKKKVSWQEARDAFEAR--GETYKIEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 190 HMGFCQHFTLL---NVAGAYWR 208


>gi|225629811|ref|ZP_03787740.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591334|gb|EEH12445.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 260

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +  +     G  I  DG  +D    +  T+ +L +IE  + +I+ 
Sbjct: 69  IRHDAAHIMAQAVKELFPNTQITIGPTIQ-DGFYYDFATGRTFTTDDLTAIEKKMKEIVK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N   V  +  R+ AI     + +G KY   +     E E+  V+       LC G H  
Sbjct: 128 SNHRFVREVWTRKQAIDFF--SGIGEKYKVDIISSIPEGENLTVYRQGDFIDLCRGPHSP 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAI---------TGQRARSHLMGQDEKLKSLAS 747
           STG +    ++    +     R +A          T  R +  L    E LK    
Sbjct: 186 STGRVKAFKLMK---VAGAYWRGDAKGPMLQRIYGTAWRNKDELNAYLECLKEAEK 238


>gi|315655426|ref|ZP_07908326.1| threonine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
 gi|315490366|gb|EFU79991.1| threonine--tRNA ligase [Mobiluncus curtisii ATCC 51333]
          Length = 669

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 41/230 (17%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++   TID +    +   HS TH++  A+  +  +     G  I  +G  +D  
Sbjct: 46  ELHDGDTVEAITIDSEMGLNILR-HSCTHVMAQAVKQVRPNVKYGIGPFI-ENGFYYDFG 103

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-----AIASGAAALLGTKYNDRVR 677
             +P T  +LK+IE  +  I  ++   V R++  E+     A       L+G K  D   
Sbjct: 104 VDEPFTPEDLKAIEKYMARICKEDQKFVRRVVTEEEGRAELADQPYKLELIGLKGTDSDN 163

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G HV ST  +  +  ++    + A 
Sbjct: 164 DQAAAGASVEVGGNELTIYDNVRKNGEVAWKDLCRGPHVPSTRLLNGVFKLMK---VSAA 220

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             R     G +A       ++ L+ +      ++ ++   V  + E  ++
Sbjct: 221 YWR-----GDQA-------NDSLQRIYGTAWATKDDLKEYVTRMEEAAKR 258


>gi|323342132|ref|ZP_08082365.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464557|gb|EFY09750.1| threonine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 596

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 11/189 (5%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E  +++ I    R  + +NHS+ HLL HA+  +        G  I  DG  +D+     
Sbjct: 9   IEEVIMVNIREDERLNI-LNHSSAHLLAHAVKRLYPEAKFWVGPVI-EDGFYYDMDLGDQ 66

Query: 627 ITSAE-LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           + + E L  IE  +  I  ++  +    + +E+A+             + +   +     
Sbjct: 67  VLTEEDLPKIESMMRKIAKEDKRITREELTKEEALEIFKDDSYKIDIINNLEDDATISAY 126

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQ 738
                  LC G HV +T ++    ++  S       S    ++R+  IT       L   
Sbjct: 127 RQAEFIDLCRGPHVETTKKMKYFKLLKVSGAYWKGDSNNKMLQRVYGIT-FETEEDLNQY 185

Query: 739 DEKLKSLAS 747
            E L++  +
Sbjct: 186 LEWLEAAKA 194


>gi|291519633|emb|CBK74854.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 588

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
             +NHS  H++  A+  +  +     G  +  +G  +D+      +T  ++ +IE  +  
Sbjct: 11  NMLNHSCAHMMAQAVKHLYPNAKFWVGPVV-EEGFYYDMDLGDTMLTDEDVAAIEKEMKK 69

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTH 698
           +      +  R +++ +A+                D        Y+ G      LC G H
Sbjct: 70  VAKSGCKIYRREISKAEALEMFKDDPYKIDLINNMDEDTQTISCYDQGDFTD--LCRGPH 127

Query: 699 VSSTGEIMLLYIVSESS 715
           V +        ++  S 
Sbjct: 128 VDNVKLCRYFKLIKHSG 144


>gi|221194423|ref|ZP_03567480.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
 gi|221185327|gb|EEE17717.1| threonyl-tRNA synthetase [Atopobium rimae ATCC 49626]
          Length = 588

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 25/208 (12%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKP 626
               V  ID        I H+A H+L  A+  +        G   T +G  +DV      
Sbjct: 6   NDGHVGEIDDAAEELHVIRHTAAHILAQAIKRLYPEAKFAYGPA-TENGFYYDVDLGDTK 64

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSV 681
           I + +  ++E  +  I  +NL + T  ++R++AI        G  Y      D      +
Sbjct: 65  INTEDFSALEAEMKKITKENLKIETFELSRDEAIK--LMEERGETYKVEHIGDLDPAERI 122

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
            +   G +   +C G H+  T  +    +   S                A       ++ 
Sbjct: 123 TFYKQGEYID-MCVGPHLLYTKGVKAFKLTGVSG---------------AYWKADKNNKM 166

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           L  +      ++  +   ++ + E  ++
Sbjct: 167 LTRVNGTAFATKDELEQHLKMLEEAEKR 194


>gi|86147528|ref|ZP_01065839.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
 gi|85834696|gb|EAQ52843.1| threonyl-tRNA synthetase [Vibrio sp. MED222]
          Length = 642

 Score = 71.3 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+     +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLFPEAKMAIGPTID-NGFYYDIDLEHSLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVVKKKVSWQEARDAFEAR--GETYKIEILDENVSKDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 190 HMGFCQHFTLL---NVAGAYWR 208


>gi|242278821|ref|YP_002990950.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
 gi|259516380|sp|C6BRH1|SYT_DESAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|242121715|gb|ACS79411.1| threonyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 642

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 11/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +  +     G  I   G  +D  + +P T  +L++IE  +   + 
Sbjct: 69  IRHSTAHLMAEAVKKLFPTAKVTIGPSI-ASGFYYDFDYERPFTPEDLEAIEAEMLRRVG 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N      +++  DA+       +G  Y   +    +  E   V+++     LC G HV+
Sbjct: 128 ANEEFTREVLSSADALKKFE--EMGEDYKIELIN-DLGEETVSVYTNGEFADLCRGPHVA 184

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
            TG +    ++S   +     R
Sbjct: 185 RTGMLKAFKLLS---VAGAYWR 203


>gi|261867949|ref|YP_003255871.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413281|gb|ACX82652.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 643

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDVDLDRSLTQEDLDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V+   ++ ++A  +      G  Y   +   ++E               +C G HV
Sbjct: 130 TNYDVIKTPVSWQEARDTFGKR--GEPYKMAILDENIERTATPALYHHQEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     I     R ++      R +     +K K L ++L
Sbjct: 188 PNMRFCHHFKL---QKIAGAYWRGDSKNKMLQRIYGTAWADK-KQLEAYL 233


>gi|30020454|ref|NP_832085.1| threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|229127762|ref|ZP_04256751.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
 gi|29896005|gb|AAP09286.1| Threonyl-tRNA synthetase [Bacillus cereus ATCC 14579]
 gi|228655839|gb|EEL11688.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-Cer4]
          Length = 640

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEITR-HSAAHILAQAVKRMYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+  TG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPFTGYLKAFQLTHVSG 206


>gi|146295981|ref|YP_001179752.1| threonyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409557|gb|ABP66561.1| Ser-tRNA(Thr) hydrolase [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 639

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 558 AIVERGILRTEMSLVLTI-----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
            I++      +      +     D   R      H+ +H+L  ++  + G  V       
Sbjct: 44  GILKDLWTPIDDDCSFEVVTFASDEGKRV---YWHTTSHILAQSVKRLFGDKVKLGIGPA 100

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
             +G  +D    + IT   L+ IE+ +  II ++L +    ++RE+A         G  Y
Sbjct: 101 IDNGFYYDFDVEESITKELLEKIEEEMQKIIKEDLKIERFELSREEAKK--LMQQRGENY 158

Query: 673 NDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              +     E E    +       LC G H+ STG +    ++S   +     R
Sbjct: 159 KVELINDIPEGEIISFYRQGEFVDLCTGPHLPSTGRVKAFKLLS---VAGAYWR 209


>gi|304309881|ref|YP_003809479.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
 gi|301795614|emb|CBL43813.1| Threonyl-tRNA synthetase [gamma proteobacterium HdN1]
          Length = 647

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 69/175 (39%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D   +   T  +L+ IE  + +I+ 
Sbjct: 82  LRHDAAHVMAQAVKELYPETQVTIGPAI-ENGYYYDFCRATSFTPEDLEKIEARMMEIVD 140

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ P+V  + +R +AIA       G  +   +     E E   ++       LC G H+ 
Sbjct: 141 RDTPIVREVWDRNEAIAFFEKQ--GELFKAEIIRDLPENETITLYRQGEFIDLCRGPHLP 198

Query: 701 STGEIM-LLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           STG++     +   +       S +  ++RI   T  R    L      L+  A 
Sbjct: 199 STGKLGKGFKLTKLAGAYWRADSTKQQLQRIYG-TAWRDVKELKAHLTLLEEAAK 252


>gi|293392211|ref|ZP_06636545.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952745|gb|EFE02864.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 643

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDVDLDRSLTQEDLDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V+   ++ ++A  +      G  Y   +   ++E               +C G HV
Sbjct: 130 TNYDVIKTPVSWQEARDTFGKR--GEPYKMAILDENIERTATPALYHHQEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +        +     I     R ++      R +     +K K L ++L
Sbjct: 188 PNMRFCHHFKL---QKIAGAYWRGDSKNKMLQRIYGTAWADK-KQLEAYL 233


>gi|266623642|ref|ZP_06116577.1| putative threonyl/alanyl tRNA synthetase, SAD [Clostridium
           hathewayi DSM 13479]
 gi|288864556|gb|EFC96854.1| putative threonyl/alanyl tRNA synthetase, SAD [Clostridium
           hathewayi DSM 13479]
          Length = 177

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 16/184 (8%)

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE--YRKLQLIHA 775
            G  R+  + G  A      + + +  L+  L      VV  VE++  E   +  ++   
Sbjct: 7   KGGIRVSMLCGMDALKDYRKKQKTVTELSVMLSAKPERVVETVEKLKNENGIKDGRINRL 66

Query: 776 KRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            ++L    +E   C +      ++     +   +L+     L +  +  ++++       
Sbjct: 67  YQELFAARMEQFQCSQEP----LAVFEEGLAPIQLRQYCTMLYEGGRGSVVLVCSGVDGS 122

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
               +   + D+        L++   K L  G GGG   MAQ  G         +     
Sbjct: 123 YQYAIGSSSADMRA------LSKTLNKELN-GRGGGSALMAQ--GTFQASKQAILETFTG 173

Query: 895 FLKK 898
            +K+
Sbjct: 174 LVKE 177


>gi|290969075|ref|ZP_06560610.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781031|gb|EFD93624.1| threonine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 635

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 10/180 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K                +    ++  LT D Q  +     H+A+H++  A+S +     
Sbjct: 33  KKVLAARVNGKVTDLCEPVADGTTVEFLTFDAQEGKDTLR-HTASHVMAQAISHLYPDVK 91

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I  +G  +D+      T  +  +IE  +  ++  N P+   +++R +A+     
Sbjct: 92  FAIGPAI-ENGFYYDLDTEHRFTQEDFAAIEKEMAALVKANEPIEKMVVSRAEALQFFRD 150

Query: 666 ALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                K     D      +     G     LC G H  STG +    +++   +     R
Sbjct: 151 KHQDYKVELIEDLPADAVISLYKQGDFVD-LCAGPHCESTGRVKAFKLLT---VAGAYWR 206


>gi|238898885|ref|YP_002924567.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259516538|sp|C4K776|SYT_HAMD5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|229466645|gb|ACQ68419.1| threonine tRNA synthetase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 638

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +D+    P+T  +L+ +E  ++++  
Sbjct: 71  IRHSCAHLLGHAVKQLWPETKMAIGPVI-ENGFYYDLDIESPLTQEDLELLEKRMHELAH 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
           +N  V+ + ++ + A  + +    G  Y   +   +++  D            +C G HV
Sbjct: 130 KNYTVIKKKVSWQKARDTFSKR--GESYKIAILDENIDSSDQPNLYFHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESS 715
            +        +   S 
Sbjct: 188 PNMSFCHYFKLQKTSG 203


>gi|319400998|gb|EFV89217.1| threonyl-tRNA synthetase [Staphylococcus epidermidis FRI909]
          Length = 645

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 15/195 (7%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I  G+R      +K   G F    +     L  + ++ +           
Sbjct: 19  GTTTEDIAQSISPGLR------KKAVAGKFNGQLVDLTRPLEQDGTIEIITPGSEEALEV 72

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D      ++S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVI-EGGFYYDFDMEDKVSSDDFDKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +V  ++++E+A            Y   +     + E   +++      LC G HV 
Sbjct: 132 ENHKIVREVVSKEEAKDFF----KDDPYKLELIDAIPDDESVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|15604092|ref|NP_220607.1| threonyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E]
 gi|2501061|sp|O05947|SYT_RICPR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2073475|emb|CAA72469.1| threonyl-tRNA synthetase [Rickettsia prowazekii]
 gi|3860783|emb|CAA14684.1| THREONYL-TRNA SYNTHETASE (thrS) [Rickettsia prowazekii]
 gi|292571818|gb|ADE29733.1| Threonyl-tRNA synthetase [Rickettsia prowazekii Rp22]
          Length = 635

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP +  +L +IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFSIDDLANIEAKMQELSK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +   + +R+ A+    +  +G  Y  ++     E E   ++       LC G H  
Sbjct: 130 KNEKITRELWDRDKAVEFFLS--IGEHYKAKIIASIPEGEPITLYRQGNFIDLCRGPHSP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGFVKHFKLMK---VAGAYWR 206


>gi|299140841|ref|ZP_07033979.1| alanyl-tRNA synthetase-related protein [Prevotella oris C735]
 gi|298577807|gb|EFI49675.1| alanyl-tRNA synthetase-related protein [Prevotella oris C735]
          Length = 157

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  ++++    H+A HLL+  +  +     S N + I     +      +  T  + K I
Sbjct: 9   NEHHKKEFPPAHTAEHLLNQLMMRMFHCERSYN-AHIERKKSKMSFILEQKPTRQQEKEI 67

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +N++I +++P+   +++R+   A      L    ++ +R+V +     G      C 
Sbjct: 68  ERRMNELIQEDMPITYELVDRDHVPADVKLDRLPDDASEMLRLVHI-----GNFDVCPCL 122

Query: 696 GTHVSSTGEIMLLYIVS 712
           G HV ST +I    ++ 
Sbjct: 123 GKHVRSTSQIGRFELLG 139


>gi|255071699|ref|XP_002499524.1| predicted protein [Micromonas sp. RCC299]
 gi|226514786|gb|ACO60782.1| predicted protein [Micromonas sp. RCC299]
          Length = 613

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I H+  H+   A+  +  +     G  I   G  +D  +    +  +LK I+  +  I
Sbjct: 40  LKIRHTTAHICAMAVQRLFPTAQVTIGPWIDR-GFYYDFDYPAGFSDKDLKDIKKQMIKI 98

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTH 698
           I +++P+    ++RE+A     A  L   Y     D ++   +     G     LC G H
Sbjct: 99  INKDMPLRREEVSREEARKRIEA--LNEPYKLEILDAIKTEPITIYHIGDEWWDLCAGPH 156

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V ST  I     +   S+     R
Sbjct: 157 VESTKAIHP-KAIDLESVAGAYWR 179


>gi|294636227|ref|ZP_06714641.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
 gi|291090484|gb|EFE23045.1| threonine--tRNA ligase [Edwardsiella tarda ATCC 23685]
          Length = 622

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV     +T  +L  +E  ++++  
Sbjct: 51  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDLDHTLTQDDLDRLEKRMHELAE 109

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A  +  A      Y   +   ++ ++D  G++       +C G HV
Sbjct: 110 KDYDVIKKKVSWQEARDAFVAR--DESYKVAILDENISHDDKPGLYHHEEYVDMCRGPHV 167

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L    ++L+  A 
Sbjct: 168 PNMRFCHHFKLQKSSGAYWRGDSNNKMLQRIYG-TAWADKKQLNAYLQRLEEAAK 221


>gi|225181661|ref|ZP_03735101.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167642|gb|EEG76453.1| threonyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 636

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 75/195 (38%), Gaps = 28/195 (14%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTI-------------DYQNRRQL--------S 584
           V++  +G  V   + + G    + ++   +             D + R            
Sbjct: 12  VREYTDGTTVSDVVADLGGRLKKEAVAAKVNGVVRDLTYTLTEDAEVRFLTFADDEGAEV 71

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+++H+L  A+  +        G  I  DG  +D  +S+    A+L+ IE  +  II 
Sbjct: 72  YRHTSSHILALAVKRLFKGVKLGIGPAI-KDGFYYDFDYSESFVPADLEKIEKEMEKIIK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++LP+    + R++A+       LG  Y   +     E      +       LC G H+ 
Sbjct: 131 ESLPLERFELERQEAVEYFNK--LGEDYKVELIQDLPEDAVISCYRCGEFVDLCAGPHLP 188

Query: 701 STGEIMLLYIVSESS 715
           +TG +  + +++ + 
Sbjct: 189 TTGRVKAVKLLNLAG 203


>gi|163752580|ref|ZP_02159762.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
 gi|161327534|gb|EDP98738.1| threonyl-tRNA synthetase [Shewanella benthica KT99]
          Length = 642

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA   +        G  I  +G  +D+     +T  ++ +++  +  +  
Sbjct: 71  LRHSCAHLLGHAFKQLWPEAKMAIGPVID-NGFYYDIDLEHKLTQEDIDALQKRMTQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
            N  V  R+ + + A  + AA   G  Y   +   ++  +D            +C G HV
Sbjct: 130 TNYKVEKRVGSWQVARDTFAAR--GETYKMAILDENISKDDQPALYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMRFCQNFKLMS---VAGAYWR 207


>gi|68536143|ref|YP_250848.1| threonyl-tRNA synthetase [Corynebacterium jeikeium K411]
 gi|123748238|sp|Q4JVC7|SYT_CORJK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|68263742|emb|CAI37230.1| thrS [Corynebacterium jeikeium K411]
          Length = 691

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 34/238 (14%)

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G    + + + + ++ G     + V +  +    ++    D        I HS  H+L  
Sbjct: 34  GPEAIVCVKETEGESAGQLRDLSWVPQQDVEV-AAVPANTDEGR---GVIRHSCAHVLAQ 89

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           A+           G  I  +G  +D   ++P T  +L  +E  +  II        +  +
Sbjct: 90  AVQKEFPGTKLGIGPAID-NGFYYDFQVAEPFTPEDLNKLEKTMKKIIKSGQKFERKAYD 148

Query: 656 R-EDAIASGAAALLGTKY-------------------NDRVRVVSVEYEDGGVHSSALCG 695
             E A A  A     T+                     +     +V    G V    LC 
Sbjct: 149 DVEQARAEYADEPFKTELIADKGNVDPDSDEATEVGAGELTAYSNVNPRTGEVEWYDLCR 208

Query: 696 GTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           G HV +T  I    +   S+        +AG++RI       + A +       + + 
Sbjct: 209 GPHVPTTRYIPAFALTRSSAAYWRGDQSKAGLQRIYGTAWESKEALAEYQTMMAEAEK 266


>gi|126729010|ref|ZP_01744825.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
 gi|126710940|gb|EBA09991.1| threonyl-tRNA synthetase [Sagittula stellata E-37]
          Length = 660

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I   G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDVKVTIGPVI-EHGWYYDFDRAEPFTPEDLGLIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-----GGVHSSALCGGTHV 699
              PV T + +R DAIA       G  Y   +     +               LC G H+
Sbjct: 133 ARDPVRTEVWSRADAIAHYEKT--GENYKVELVNAIPDDGQPIRMYWHGDWQDLCRGPHL 190

Query: 700 SSTGEI--MLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +TG++      ++S +       S R  ++RI  +   + R  L      L+  A 
Sbjct: 191 QNTGQVPGDAFKLMSVAGAYWRGDSKRQMLQRIYGVA-FKNRDDLKKHLNMLEEAAK 246


>gi|323499329|ref|ZP_08104306.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
 gi|323315717|gb|EGA68751.1| threonyl-tRNA synthetase [Vibrio sinaloensis DSM 21326]
          Length = 642

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+     +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAVKQLFPEAKMAIGPTID-NGFYYDIDLEHSLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVIKKKVSWQEARDAFEAR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 190 HMGFCQHFTLL---NVAGAYWR 208


>gi|119572225|gb|EAW51840.1| alanyl-tRNA synthetase, isoform CRA_c [Homo sapiens]
          Length = 72

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 29/43 (67%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP 45
            S IR  F++FF++N H  + SS+ IP +DPTL+F N+GM  
Sbjct: 6  TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQ 48


>gi|168033647|ref|XP_001769326.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679432|gb|EDQ65880.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 222

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 70/213 (32%), Gaps = 31/213 (14%)

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------RARSHLMGQD-EK 741
           GTH+S+  E   L +VSE  I  G RR+ A T                            
Sbjct: 1   GTHLSNINEAEALAMVSEKRIAKGGRRVTAFTMHTECQAIHQILVFSAQIDDANKMQGAA 60

Query: 742 LKSLASFLK----------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           LK   S LK            +    GR  E+ E  ++ Q       LQL + +      
Sbjct: 61  LKKEVSALKNLLETAILPAAKKAEFRGRFSELQEGIKQAQKSAGAASLQLKLNEAVTSAD 120

Query: 792 ADVNF-----MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTED 845
             V       +  I   +D+  ++     + +K +   +ML  + ++  K  +   V   
Sbjct: 121 VAVALCQEYCVLRIDDGLDANAVREAASLVIEKHKYLAVMLFSVDEQRNKVLICAFVPNS 180

Query: 846 LLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877
                  A+D  + S   + G G      +AQ 
Sbjct: 181 AAKQGLGALDWLQGSLVPINGTGNSDNDGLAQG 213


>gi|315634189|ref|ZP_07889478.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
 gi|315477439|gb|EFU68182.1| threonine--tRNA ligase [Aggregatibacter segnis ATCC 33393]
          Length = 643

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDIDALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V+   ++ ++A  +      G  Y   +   ++E               +C G HV
Sbjct: 130 TNYDVIKTPVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHQEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     I     R
Sbjct: 188 PNMRFCHHFKL---QKIAGAYWR 207


>gi|315498771|ref|YP_004087575.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
 gi|315416783|gb|ADU13424.1| threonyl-tRNA synthetase [Asticcacaulis excentricus CB 48]
          Length = 640

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 22/190 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   HLL  A+  +        G  I  DG  +D    +P +  +L  IE  + +++ 
Sbjct: 71  IRHDTAHLLAQAVQELFPGTQVTIGPAI-EDGFYYDFARDEPFSLDDLPKIEKKMKELVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-----SSALCGGTHV 699
           ++  +V  +  R+ AI       +G  Y   +       E   V+        LC G H 
Sbjct: 130 RDDKIVREVWERDAAIQHFE--EIGEHYKAEIIRDLPGTETITVYRHGDSWKDLCRGPHF 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            S+  I        + +     R                + +L+ +      S+ ++   
Sbjct: 188 PSSKFIG--KAFKLTKLAGAYWR------------GDHNNAQLQRIYGTAWTSEEDLQAY 233

Query: 760 VEEIWEEYRK 769
           +  + E  ++
Sbjct: 234 ITRLEEAEKR 243


>gi|312881548|ref|ZP_07741334.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370825|gb|EFP98291.1| threonyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 642

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I   G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLYPEAKMAIGPTID-SGFYYDIDLEQSLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSST 702
              VV + ++ ++A  +        K       VS +   G  H      +C G HV   
Sbjct: 132 KYAVVKKKVSWQEARDAFEGRRETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHVPHM 191

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G      ++S   I     R
Sbjct: 192 GFCQHFTLLS---IAGAYWR 208


>gi|187250976|ref|YP_001875458.1| threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
 gi|186971136|gb|ACC98121.1| Threonyl-tRNA synthetase [Elusimicrobium minutum Pei191]
          Length = 583

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS +H++  A+  +        G  I  +G  +D          +LK+IE  + +II  
Sbjct: 10  RHSLSHIMAQAVQELFPGTRLGIGPAI-ENGFYYDFESDHKFVPEDLKAIEAKMKEIIKA 68

Query: 646 NLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
             P   + M + +A+   +        +  + +   S+     G     LC G HV  TG
Sbjct: 69  KQPFACKNMPKAEAVKFFSDKGEHFKVELINELEDGSISVYTNGDFVD-LCKGPHVEHTG 127

Query: 704 EIMLLYIVSESSIRAGIR----------RIE---AITGQRARSHLMGQDEKLKS 744
           +I    +     I               RI      T  +   ++  Q+E  K 
Sbjct: 128 KINNFKLT---HIAGAYWKGDEKRPMLQRIYGLAFETKDKLNEYIKQQEEAAKR 178


>gi|229011636|ref|ZP_04168819.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
 gi|228749594|gb|EEL99436.1| Threonyl-tRNA synthetase [Bacillus mycoides DSM 2048]
          Length = 639

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G     +   R  +     + ++T+D     +++  HSA H+L  A+  I G  V
Sbjct: 37  KKAVAGKVNDQSFDLRRNIEESAKVEIITMDSDEGVKIAR-HSAAHILAQAVKRIYGD-V 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMKNIINENVKIERVEVSREEAKELF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|160935092|ref|ZP_02082478.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
 gi|156866545|gb|EDO59917.1| hypothetical protein CLOLEP_03968 [Clostridium leptum DSM 753]
          Length = 660

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 81/205 (39%), Gaps = 20/205 (9%)

Query: 557 HAIVERGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
             +  R  +  +  + L T D Q  ++ +  H+ +H++  A+  +    V   G  I   
Sbjct: 57  RVVDLRTPVTEDSEVELLTFDSQEGKR-AYWHTTSHIMAQAVGRLFPDAVFAIGPSIDQ- 114

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675
           G  +D    + +T  +L +IE  +  II ++ P+    +  E+A+        G  Y   
Sbjct: 115 GFYYDFDLPRNLTPDDLTAIESEMKKIIKEDEPLERFELEPEEAVK--LMKEKGQPYKVE 172

Query: 676 VRV------VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRR 722
           +          + +   G     LC G H+ STG++  + + S +       S    ++R
Sbjct: 173 LIQEHSGKGEKISFYRQGDFVD-LCAGPHLMSTGKVKAVKLTSCTGAYWRGDSKSKMLQR 231

Query: 723 IEAITGQRARSHLMGQDEKLKSLAS 747
           +  I+  +A S L    E ++    
Sbjct: 232 VYGISFPKA-SELTAHLEAMEEAKK 255


>gi|114769524|ref|ZP_01447150.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
 gi|114550441|gb|EAU53322.1| threonyl-tRNA synthetase [alpha proteobacterium HTCC2255]
          Length = 649

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D    +P T  +L  IE  + +II 
Sbjct: 74  IRHDCAHIMARAVQEIWPDVQVTIGPVID-NGWYYDFDRKEPFTPEDLSIIEKKMREIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED----GGVHSSALCGGTHVS 700
              PV   + +RE AI           Y   +       ED       +   LC G H+ 
Sbjct: 133 LKDPVRREVWDRERAIKHYTDT--NEPYKVELINSIPGDEDLSMYWHGYWQDLCRGPHLV 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
            T ++      ++S   +     R
Sbjct: 191 HTAQVPGDSFKLMS---VAGAYWR 211


>gi|269958355|ref|YP_003328142.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
 gi|269848184|gb|ACZ48828.1| threonyl-tRNA synthetase [Anaplasma centrale str. Israel]
          Length = 636

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  I        G  I  +G  +D   S  ++  + ++IE  + DIIA
Sbjct: 73  IRHDAAHIMARAVREIFPDTKLAIGPTI-ENGFYYDFDLSHSLSEKDFEAIERKMADIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++   V  +  RE AI       LG  Y   +       E+  V+       LC G H  
Sbjct: 132 KDERFVREVWPRERAIKFFED--LGEHYKLEILSKVPLGEEITVYKHGEFVDLCRGPHAP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    +   S                A      +++ L+ +      S   +   +
Sbjct: 190 SARYVKAFKLTKISG---------------AYWLGDQKNKMLQRVYGTAWHSSEALASYI 234

Query: 761 EEIWEEYRKLQLIHAK 776
             + E  ++     AK
Sbjct: 235 HNMQEAEKRDHRKIAK 250


>gi|238650420|ref|YP_002916272.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
 gi|259516667|sp|C4K0X3|SYT_RICPU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238624518|gb|ACR47224.1| threonyl-tRNA synthetase [Rickettsia peacockii str. Rustic]
          Length = 635

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D     P T+ +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDTPFTTDDLAVIEAKMQELSQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEQVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGVVKHFKLMK---VAGAYWR 206


>gi|167626332|ref|YP_001676832.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189083609|sp|B0TY89|SYT_FRAP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167596333|gb|ABZ86331.1| threonyl-tRNA synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 635

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL +A+  +  +     G  I  +G  +D +  + I  A+L +IE  + +I  
Sbjct: 71  LRHSCAHLLANAVKELYPNTEVTIGPVID-NGFYYDFSFKETIGEADLANIEKRMKEIAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +  +++++EDAIA   A   G  Y   +       +   +++      LC G HV 
Sbjct: 130 KGSSISYKVVSKEDAIAFFKAQ--GENYKVDIIESIPADQQIKIYTQGDFSDLCRGPHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST  I    +   + 
Sbjct: 188 STAAIKAFKLTKLAG 202


>gi|225374732|ref|ZP_03751953.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
 gi|225213424|gb|EEG95778.1| hypothetical protein ROSEINA2194_00352 [Roseburia inulinivorans DSM
           16841]
          Length = 594

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNV 639
           R  ++NHS  H++  A+  +        G  +  +G  +D+     I + E + +IE  +
Sbjct: 12  RLNTLNHSCAHVMAQAVKHLYPQAKFWVGPVV-KEGFYYDIDLGDDIINDEAIAAIEKEM 70

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +  +   +  R +++ +A+             + +   ++   D G  +  LC G HV
Sbjct: 71  KKVCKEGKKIYRREISKAEAMEMFKDDPYKLDLIEGLEDGNISVYDQGDFTD-LCRGPHV 129

Query: 700 SSTGEIMLLYIVSESSIR-AG------IRRIEAIT 727
            +T       +V  S +   G      ++RI  + 
Sbjct: 130 DNTKLCKNFKLVKYSGVYWKGDANNHVMQRIYGVC 164


>gi|157803434|ref|YP_001491983.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
 gi|166225493|sp|A8EXW5|SYT_RICCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157784697|gb|ABV73198.1| threonyl-tRNA synthetase [Rickettsia canadensis str. McKiel]
          Length = 635

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T  +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFTVDDLAVIEAKMQELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + NR+ AI    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEKVTRELWNRDKAIEFFRS--IGEHYKAEIIASIPTDEPITLYRQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGFVKYFKLMK---VAGSYWR 206


>gi|269123175|ref|YP_003305752.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
 gi|268314501|gb|ACZ00875.1| threonyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112]
          Length = 633

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 19/233 (8%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K     F    +     L  + +L L      +    + HS+ H++  A+ ++  +   
Sbjct: 32  KKTVGAFFNGTQVDITYNLDKDGTLELITTDSKKGLEILRHSSAHVMAEAVMSLFPNTKV 91

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG--A 664
             G  I  +G  +D    +P T  +L  IE  +  II  N      + +RE A A    A
Sbjct: 92  TIGPAI-ENGFYYDFDTERPFTEEDLVKIEKEMKKIIKLNEKFSREVWSREKARAYFENA 150

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                 +  D +          G     LC GTHV STG I    +++     AG     
Sbjct: 151 GQNYKVEILDSLEEDEFTIYTQGKFVD-LCRGTHVPSTGYIKAFKLLN----AAG----- 200

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                 A       ++ L+ +      SQ  +   ++++ E  ++      K+
Sbjct: 201 ------AYWRGDSNNKMLQRIYGTSFYSQDELDAYIKQVEEAEKRDHRKLGKQ 247


>gi|255004741|ref|ZP_05279542.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Virginia]
          Length = 636

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  I        G  I  +G  +D   S  ++  + ++IE  + DIIA
Sbjct: 73  IRHDAAHIMARAVREIFPDTKLAIGPTI-ENGFYYDFDLSHSLSEKDFEAIERKMADIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++   V  +  RE AI       LG  Y   +       E+  V+       LC G H  
Sbjct: 132 KDERFVREVWPRERAIKFFED--LGEHYKLEILSKVPLGEEITVYKHGEFVDLCRGPHAP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    +   S                A      +++ L+ +      S   +   +
Sbjct: 190 SARYVKAFKLTKISG---------------AYWLGDQKNKMLQRVYGTAWHSSEALASYI 234

Query: 761 EEIWEEYRKLQLIHAK 776
             + E  ++     AK
Sbjct: 235 HNMQEAEKRDHRKIAK 250


>gi|260770313|ref|ZP_05879246.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
 gi|260615651|gb|EEX40837.1| threonyl-tRNA synthetase [Vibrio furnissii CIP 102972]
          Length = 642

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + ++  +++ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLEESLSQDDIEKIEARMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSST 702
              VV + ++ ++A  +  A     K     + V+ +   G  H      +C G HV   
Sbjct: 132 KYQVVKKKVSWQEARDTFEARQEPYKMEILDQNVARDDRPGLYHHEEYIDMCRGPHVPHM 191

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G      ++   ++     R
Sbjct: 192 GFCQHFKLL---NVAGAYWR 208


>gi|87122885|ref|ZP_01078753.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
 gi|86161836|gb|EAQ63133.1| threonyl-tRNA synthetase [Marinomonas sp. MED121]
          Length = 572

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +  +     G  I  +G  +D+ + + +T  ++ ++E  + ++I 
Sbjct: 71  IRHSFAHLVGHAVKQLFPTAKMAIGPTI-ENGFYYDIAYERSLTLEDMAAVEKRIGELIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSA----LCGGTHV 699
            +  V  R+    +A A          Y   +     E   + G++       +C G HV
Sbjct: 130 TDYDVNKRMTPVAEARALFVER--EEDYKVELIDGLDESISEVGLYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    ++              + G  A       +  L+ +       +  +   
Sbjct: 188 PNTRVLRHFKLMK-------------LAG--AYWRGDSNNAMLQRIYGTAWNDKKELKAH 232

Query: 760 VEEIWEEYRKLQLIHAKR 777
           +  + E  ++      K+
Sbjct: 233 LHRLEEAEKRDHRKLGKK 250


>gi|315181382|gb|ADT88295.1| threonyl-tRNA synthetase [Vibrio furnissii NCTC 11218]
          Length = 642

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + ++  +++ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLEESLSQDDIEKIEARMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSST 702
              VV + ++ ++A  +  A     K     + V+ +   G  H      +C G HV   
Sbjct: 132 KYQVVKKKVSWQEARDTFEARQEPYKMEILDQNVARDDRPGLYHHEEYIDMCRGPHVPHM 191

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G      ++   ++     R
Sbjct: 192 GFCQHFKLL---NVAGAYWR 208


>gi|170744367|ref|YP_001773022.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
 gi|168198641|gb|ACA20588.1| threonyl-tRNA synthetase [Methylobacterium sp. 4-46]
          Length = 670

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+ ++        G  I  +G  +D     P +  +  +IE  +
Sbjct: 66  RALELIRHDCAHVLAEAVQSLWPGTQVTIGPVI-ENGFYYDFYRETPFSPEDFPAIEARM 124

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++      +  R+   A  A    G  +   +     E ED  ++       LC 
Sbjct: 125 REIIARDAAFTKEVWARDAVRALFAEK--GESFKVELVDAIPEGEDLKIYRQGEWFDLCR 182

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG++     ++    +     R
Sbjct: 183 GPHMTSTGKVGTAFKLMK---VAGAYWR 207


>gi|167648480|ref|YP_001686143.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
 gi|189083602|sp|B0T0Z7|SYT_CAUSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167350910|gb|ABZ73645.1| threonyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 659

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 22/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+  +        G  +  DG  +D    +P +  +L  IE+ +  I+ 
Sbjct: 76  IRHDTAHVLAEAVQELFPGTQVTIGPNV-EDGFYYDFARDEPFSLDDLPKIEERMRQIVD 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-----SSALCGGTHV 699
           ++  +    ++R+ AIA   A  +G  Y  ++       +   V+        LC G H+
Sbjct: 135 RDEKIRREEVDRDAAIADFEA--MGESYKAQIIRDLPASDTITVYHQGEKWKDLCRGPHL 192

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +        + +     R                + +L+ +      ++ ++   
Sbjct: 193 PSTKAVG--KAFKLTKLAGAYWR------------GDQNNAQLQRIYGTSWATEADLEAH 238

Query: 760 VEEIWEEYRKLQLIHAK 776
           ++ I E  R+      K
Sbjct: 239 LKRIEEAERRDHRKLGK 255


>gi|254995424|ref|ZP_05277614.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str.
           Mississippi]
          Length = 636

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  I        G  I  +G  +D   S  ++  + ++IE  + DIIA
Sbjct: 73  IRHDAAHIMARAVREIFPDTKLAIGPTI-ENGFYYDFDLSHSLSEKDFEAIERKMADIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++   V  +  RE AI       LG  Y   +       E+  V+       LC G H  
Sbjct: 132 KDERFVREVWPRERAIKFFED--LGEHYKLEILSKVPLGEEITVYKHGEFVDLCRGPHAP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    +   S                A      +++ L+ +      S   +   +
Sbjct: 190 SARYVKAFKLTKISG---------------AYWLGDQKNKMLQRVYGTAWHSSEALASYI 234

Query: 761 EEIWEEYRKLQLIHAK 776
             + E  ++     AK
Sbjct: 235 HNMQEAEKRDHRKIAK 250


>gi|229079560|ref|ZP_04212097.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
 gi|228703729|gb|EEL56178.1| Threonyl-tRNA synthetase [Bacillus cereus Rock4-2]
          Length = 640

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++R++A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNIEDLRKIEKEMKKIINENIKIERVEVSRKEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|197118372|ref|YP_002138799.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
 gi|238690868|sp|B5EBX9|SYT_GEOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|197087732|gb|ACH39003.1| threonyl-tRNA synthetase [Geobacter bemidjiensis Bem]
          Length = 636

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 17/203 (8%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AG  + D   +IG G+       +    G    + +     L     + +  +       
Sbjct: 18  AGASIFDLAASIGAGLA------KAAIAGKIDGNLVDLNTPLADGARVEIITEKSPEALE 71

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS +HL+  A+  +        G  I   G  +D     P T  +L+ IE+ + ++ 
Sbjct: 72  IIRHSTSHLMAQAVKALFPQAKVTIGPAIET-GFYYDFDVDHPFTPEDLEKIEEKMRELA 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             +L +  + +   DAIA      +G  Y   + +  +  +   ++S      LC G H+
Sbjct: 131 KADLKIERKELTSADAIALF--KGMGENYKVEL-IEDLGADKVSLYSQGDFVDLCRGPHL 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
             T  I    + S   I     R
Sbjct: 188 PKTSFIKAFKLTS---IAGAYWR 207


>gi|56417255|ref|YP_154329.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
 gi|73919765|sp|Q5P9F6|SYT_ANAMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56388487|gb|AAV87074.1| threonyl-tRNA synthetase [Anaplasma marginale str. St. Maries]
          Length = 636

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 22/196 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  I        G  I  +G  +D   S  ++  + ++IE  + DIIA
Sbjct: 73  IRHDAAHIMARAVREIFPDTKLAIGPTI-ENGFYYDFDLSHSLSEKDFEAIERKMADIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++   V  +  RE AI       LG  Y   +       E+  V+       LC G H  
Sbjct: 132 KDERFVREVWPRERAIKFFED--LGEHYKLEILSKVPLGEEITVYKHGEFVDLCRGPHAP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    +   S                A      +++ L+ +      S   +   +
Sbjct: 190 SARYVKAFKLTKISG---------------AYWLGDQKNKMLQRVYGTAWHSSEALASYI 234

Query: 761 EEIWEEYRKLQLIHAK 776
             + E  ++     AK
Sbjct: 235 HNMQEAEKRDHRKIAK 250


>gi|298346881|ref|YP_003719568.1| threonyl-tRNA synthetase [Mobiluncus curtisii ATCC 43063]
 gi|298236942|gb|ADI68074.1| threonyl-tRNA synthetase [Mobiluncus curtisii ATCC 43063]
          Length = 669

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 41/230 (17%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++   TID +    +   HS TH++  A+  +  +     G  I  +G  +D  
Sbjct: 46  ELHDGDTVEAITIDSEMGLNILR-HSCTHVMAQAVKQVRPNVKYGIGPFI-ENGFYYDFG 103

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-----AIASGAAALLGTKYNDRVR 677
             +P T  +LK+IE  +  I  ++   V R++  ++     A       L+G K  D   
Sbjct: 104 VDEPFTPEDLKAIEKYMARICKEDQKFVRRVVTEDEGRAELADQPYKLELIGLKGTDSDN 163

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G HV ST  +  +  ++    + A 
Sbjct: 164 DQAAAGASVEVGGSELTIYDNVRNNGEVAWKDLCRGPHVPSTRLLNGVFKLMK---VSAA 220

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             R     G +A       ++ L+ +      ++ ++   V  + E  ++
Sbjct: 221 YWR-----GDQA-------NDSLQRIYGTAWATKDDLKEYVTRMEEAAKR 258


>gi|229828744|ref|ZP_04454813.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
 gi|229793338|gb|EEP29452.1| hypothetical protein GCWU000342_00810 [Shuttleworthia satelles DSM
           14600]
          Length = 597

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 8/175 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H+L  A+  + G             G  +D      IT  +   IE  + +I+ 
Sbjct: 10  YRHSLAHILAKAVIELYGPETQYAIGPQIDTGFYYDFKLPASITEDDFPKIEAKMKEILK 69

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +    +   + R+ A+              D      +     G   + LC G HV +  
Sbjct: 70  RKEDFIREEVTRDQALEIFRDQKYKTEIIKDLPEDAVITVYKTGDDFTDLCRGPHVDNAK 129

Query: 704 EIM--LLYIVSESSIRAGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQG 754
           E+M     I S S       R +    T QR         E+LK     L+ ++ 
Sbjct: 130 ELMSAAFAIRSTSG---AYWRGDEKNDTLQRIYVDAFPSKEELKEHQRLLREAKE 181


>gi|196230369|ref|ZP_03129231.1| threonyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
 gi|196225299|gb|EDY19807.1| threonyl-tRNA synthetase [Chthoniobacter flavus Ellin428]
          Length = 692

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 14/145 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HSA H+L  A+  I        G  +  +G  +D+     I+  +   IE+ +   I
Sbjct: 19  RLRHSAAHVLATAILRIWPEAQFAAGPPV-ENGFYYDLEMPHRISPDDFLKIEEEMKKEI 77

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG---------TKYNDRVRVVSVEYEDGGVHSS--- 691
             N       ++R++AIA   +  LG         +K+         E E+  ++ +   
Sbjct: 78  KANHVFERTAVSRDEAIALANSGRLGGLSERPGNVSKFKIGNLADIPEGEEISLYKNGDF 137

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESS 715
             LC G HV  TG I    + S +S
Sbjct: 138 LDLCAGPHVMRTGNIGAFRLTSVAS 162


>gi|166365884|ref|YP_001658157.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088257|dbj|BAG02965.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 599

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           ++     I H+ +H++  A+  +        G   T  G  +D    +P T  +LK I+ 
Sbjct: 14  ESDHLKRIRHTTSHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTDKDLKDIKK 72

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALC 694
            +  II + LPV+   ++RE+A        +   Y   +       +     G     LC
Sbjct: 73  EMVKIINKKLPVIREQVSREEAEKR--IKAINEVYKLEILAGIQEPITLYHLGDAWWDLC 130

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            G H+ +T E+     +   ++     R
Sbjct: 131 AGPHLDNTSELDP-KAIELETVAGAYWR 157


>gi|32265941|ref|NP_859973.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
 gi|73919797|sp|Q7VJ09|SYT_HELHP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|32261990|gb|AAP77039.1| threonyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449]
          Length = 604

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  +  +G  +D   +  I+  +L  IE  + +I  
Sbjct: 41  IRHSCAHLMAQAIKILYPEAQFFVGPVVD-EGFYYDFKVNTKISEEDLLVIEAKMKEIAK 99

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
              P+    ++R++A A  A   L      R+    +     G     LC G H+ +T  
Sbjct: 100 NAYPITKITLSRKEAQARFAHDELKVAVMSRIPDEKLSIYTQGDF-EDLCRGPHLPNTKL 158

Query: 705 IMLLYIVS 712
           +    +  
Sbjct: 159 LEHFKLTK 166


>gi|152975545|ref|YP_001375062.1| threonyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152024297|gb|ABS22067.1| threonyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  L  +  + +++ID +    ++  H+A H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDQLFDLRRKLENDAKVEIISIDSEEGVNIAR-HTAAHILAQAVKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                 +  +G  +D+  S  IT  +   IE  + +II +NL +    ++RE A      
Sbjct: 95  KLGVGPVIENGFYYDLDLSSSITVEDFPIIEKEMKNIIHENLNIERIEISREAAEKFFKE 154

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
           A         +     E E   ++       LC G H+ STG +    +   S 
Sbjct: 155 A--DDHLKLELLEAIPEGEVITMYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|228939521|ref|ZP_04102109.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972374|ref|ZP_04132985.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978988|ref|ZP_04139352.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228780699|gb|EEM28913.1| Threonyl-tRNA synthetase [Bacillus thuringiensis Bt407]
 gi|228787391|gb|EEM35359.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820221|gb|EEM66258.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940068|gb|AEA15964.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 640

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  ++  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQSVKRMYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDFPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|18976800|ref|NP_578157.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
 gi|18892395|gb|AAL80552.1| partial alanyl-tRNA synthetase matches COOH terminus [Pyrococcus
           furiosus DSM 3638]
          Length = 149

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGS-CITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H+L  A+  +LG       S  +  +  R  V  ++  T  E++ IE   N+ I
Sbjct: 5   RTHTALHVLKGAVVKVLGEGAKWTASVYVNGNHGRLTVKFNRKPTHEEIREIERLANEKI 64

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+P+    ++RE+A       +    +     V +++       +   C   H  +TG
Sbjct: 65  KENVPIQIYELSREEAEKIFGDEMYDL-FPVPEHVRTLKVVVIEDWNVNACNKEHTKTTG 123

Query: 704 EIMLLYIVS 712
           EI  + I  
Sbjct: 124 EIGEIKIRK 132


>gi|288920333|ref|ZP_06414645.1| threonyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288348281|gb|EFC82546.1| threonyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 658

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 25/179 (13%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  +T+D  + R +   HS  H++  A+  +        G  I  DG  +D  
Sbjct: 50  PLAAGDVVEPITVDSPDGRAIVR-HSCAHVVAQAVQDLFPKAKLGIGPPIQ-DGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKY----- 672
             +P T  +LK++E    +II        R++  ++A A          L+G K      
Sbjct: 108 VERPFTPEDLKAVEKRAQEIIKSGQRFSRRVVTDDEARAELADEPYKIELIGLKSSAGDD 167

Query: 673 ---------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                     +     +++ + G +    LC G HV +T  I    +       A   R
Sbjct: 168 AEASVEVGAGELTIYDNLDPKSGELCWKDLCRGPHVPTTRHIPAFAV---QRSAAAYWR 223


>gi|197301753|ref|ZP_03166823.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
 gi|197299193|gb|EDY33723.1| hypothetical protein RUMLAC_00479 [Ruminococcus lactaris ATCC
           29176]
          Length = 655

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H+L  A+  +        G  I  DG  +D   ++P +   L  +E  +  II 
Sbjct: 70  IRHTASHVLAQAVKRLFPDAKIAIGPAI-EDGFYYDFE-AEPFSRETLDKLEAEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +    + RE+AI           +   +     E E+   +       LC G H+ 
Sbjct: 128 EGHELKRYTLPREEAIKF--MQEKNEPFKVELIEDLPEGEEISFYDQGEFVDLCAGPHLM 185

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +T  I    + S S       S +A ++RI   T    +  L    EKL+    
Sbjct: 186 TTKGIKAFKLTSSSMAYWRGDSDKARLQRIYG-TAFNKKEELNAYLEKLEDAKR 238


>gi|251792477|ref|YP_003007203.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533870|gb|ACS97116.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 643

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV   + +T  ++ ++E ++ ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPDVKMAIGPTID-NGFYYDVDLDRSLTQEDIDALEKHMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            N  V+   ++ ++A  +      G  Y   +   ++E               +C G HV
Sbjct: 130 TNYDVIKTPVSWQEARDTFEKR--GEPYKMAILDENIERTATPALYHHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     I     R
Sbjct: 188 PNMRFCHHFKL---QKIAGAYWR 207


>gi|49474171|ref|YP_032213.1| threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
 gi|73919771|sp|Q6FZZ7|SYT_BARQU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|49239675|emb|CAF26046.1| Threonyl-tRNA synthetase [Bartonella quintana str. Toulouse]
          Length = 658

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
              R    I H   H+L  A+  +        G  I  +G  +D    +P T  +L  IE
Sbjct: 66  EDPRALELIRHDCAHVLAEAVQELFPETQVTIGPVI-ENGFYYDFARQQPFTLNDLTIIE 124

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----A 692
             +++II +N P    I +R+ A      +     Y   +     + +D  ++       
Sbjct: 125 KKMHEIIQRNKPFRKEIWSRKKAREIF--SEKNELYKVELIDSIPDNQDLKIYYQGDWFD 182

Query: 693 LCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEA 725
           LC G H+ STG+I     ++    +     R +A
Sbjct: 183 LCRGPHMQSTGQIGNAFKLMK---VAGAYWRGDA 213


>gi|304389414|ref|ZP_07371377.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327224|gb|EFL94459.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 669

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 41/230 (17%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++   TID +    +   HS TH++  A+  +  +     G  I  +G  +D  
Sbjct: 46  ELHDGDTVEAITIDSEMGLNILR-HSCTHVMAQAVKQVRPNVKYGIGPFI-ENGFYYDFG 103

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-----AIASGAAALLGTKYNDRVR 677
             +P T  +LK+IE  +  I  ++   V R++  ++     A       L+G K  D   
Sbjct: 104 VDEPFTPEDLKAIEKYMARICKEDQKFVRRVVTEDEGRAELADQPYKLELIGLKGTDSDN 163

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G HV ST  +  +  ++    + A 
Sbjct: 164 DQAAAGASVEVGGNELTIYDNVRKNGEVAWKDLCRGPHVPSTRLLNGVFKLMK---VSAA 220

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             R     G +A       ++ L+ +      ++ ++   V  + E  ++
Sbjct: 221 YWR-----GDQA-------NDSLQRIYGTAWATKDDLKEYVTRMAEAAKR 258


>gi|259047194|ref|ZP_05737595.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
 gi|259036244|gb|EEW37499.1| threonine--tRNA ligase [Granulicatella adiacens ATCC 49175]
          Length = 647

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HAL+ +        G  I   G  +D      +T   L  +E  +  I+ 
Sbjct: 71  LRHSTAHLLAHALTRLYPGIHFGVGPAIET-GFYYDTDMPNQLTEDALPEVEAEMMKIVK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVS 700
           +N P+V R ++R++A+   A       Y   +     E E   V+       LC G HV 
Sbjct: 130 ENYPIVRREVSRKEALEIFA----NDPYKVELINGLPEDETITVYQQEDFVDLCRGIHVP 185

Query: 701 STGEIMLLYIVSESS 715
           STG I +  ++S + 
Sbjct: 186 STGRIQVFKLLSLAG 200


>gi|261250893|ref|ZP_05943467.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
 gi|260937766|gb|EEX93754.1| threonyl-tRNA synthetase [Vibrio orientalis CIP 102891]
          Length = 642

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+     +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLYPEAKMAIGPTID-NGFYYDIDLEYSLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              V+ + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVIKKKVSWQEARDAFEAR--GETYKMEILDENVSRDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 190 HMGFCQHFTLL---NVAGAYWR 208


>gi|222475619|ref|YP_002564036.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
 gi|255003612|ref|ZP_05278576.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Puerto
           Rico]
 gi|254783506|sp|B9KH76|SYT_ANAMF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222419757|gb|ACM49780.1| Threonyl-tRNA synthetase (thrS) [Anaplasma marginale str. Florida]
          Length = 636

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  I        G  I  +G  +D   S  ++  + ++IE  ++DIIA
Sbjct: 73  IRHDAAHIMARAVREIFPDTKLAIGPTI-ENGFYYDFDLSHSLSEKDFEAIERKMSDIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVS 700
           ++   V  +  RE AI       LG  Y   +       E+  V+       LC G H  
Sbjct: 132 KDERFVREVWPRERAIKFFED--LGEHYKLEILSKVPLGEEITVYKHGEFVDLCRGPHAP 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    +   S                A      +++ L+ +      S   +   +
Sbjct: 190 SARYVKAFKLTKISG---------------AYWLGDQKNKMLQRVYGTAWHSSEALASYI 234

Query: 761 EEIWEEYRKLQLIHAK 776
             + E  ++     AK
Sbjct: 235 HNMQEAEKRDHRKIAK 250


>gi|150015183|ref|YP_001307437.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901648|gb|ABR32481.1| threonyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 643

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 29/243 (11%)

Query: 555 VHHAIVERGILRTEMSLVLTI---DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611
           + +  VE         + L+I   D Q  +  ++ HS +H+L +A+  +        G  
Sbjct: 39  IVNGKVEDLRKEINEDVELSICTFDSQEGKD-ALRHSISHVLAYAVKRLFPETKLAIGPS 97

Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           I   G  +D       T+A+L+ +E  +  II +N  +    + R +A+      +    
Sbjct: 98  IAT-GFYYDFDRESAFTAADLEKLEAEMQKIIKENPEISRFELPRNEALEL----MKDEP 152

Query: 672 YNDRVRVVSVEYEDGGVHS----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
           Y   +     E E    +     + LC G H+ S   +  + +       AG        
Sbjct: 153 YKVELINDLPENEIISFYKMGDFTDLCAGPHLMSIKSVKAIKLTR----SAG-------- 200

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
              A      +++ L  +     + + ++   +E + EE +K       R+L+L   D +
Sbjct: 201 ---AYWKGNEKNKMLTRIYGTAFLKKSDLDAFLEAL-EEAKKRDHNKLGRELKLFTTDEN 256

Query: 788 CHK 790
             +
Sbjct: 257 VGQ 259


>gi|229017690|ref|ZP_04174581.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
 gi|228743616|gb|EEL93725.1| Threonyl-tRNA synthetase [Bacillus cereus AH1273]
          Length = 639

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G     +   R  +     + ++T+D     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDQSFDLRRNIEESAKVEIVTMDSDEGVKIAR-HSAAHILAQAVKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLPKIEKEMKKIINENVRIERVEVSREEAKKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 KEMNDHLKLELLEAIPNGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|158313600|ref|YP_001506108.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|238686857|sp|A8LE67|SYT_FRASN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|158109005|gb|ABW11202.1| threonyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 658

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 65/181 (35%), Gaps = 25/181 (13%)

Query: 562 RGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              L     +  +T+D  + R +   HS  H++  A+  +        G  I  DG  +D
Sbjct: 48  SHPLAAGDVVEPITVDSPDGRAIVR-HSCAHVVAQAVQDLFPKARLGIGPPIQ-DGFYYD 105

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTK---- 671
               +P T  +LK++E    +II        R+++ ++A A          L+G K    
Sbjct: 106 FDVERPFTPEDLKAVEKRAQEIIKAGQRFARRVVSEDEARAELADEPYKIELIGLKSSAG 165

Query: 672 ----------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                       +     +++ + G +    LC G HV +T  I    +       A   
Sbjct: 166 DDAEAGVEVGEGELTIYDNLDPKSGELCWKDLCRGPHVPTTRHIPAFAV---QRSAAAYW 222

Query: 722 R 722
           R
Sbjct: 223 R 223


>gi|160914239|ref|ZP_02076460.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
 gi|158433866|gb|EDP12155.1| hypothetical protein EUBDOL_00249 [Eubacterium dolichum DSM 3991]
          Length = 610

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 4/143 (2%)

Query: 575 IDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAEL 632
           ID +   QLS +NHS  H++  A+  +        G  ++ +G  +D+    + I   +L
Sbjct: 35  IDIKEHEQLSVMNHSCAHMMAQAVKRLYPQAKFWVGPVVS-EGFYYDIDLGDQVIKDEDL 93

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE  +  I      +V + +++++A+               +   ++     G     
Sbjct: 94  AKIEKEMKKIAKDGKRIVRKEISKDEALEMFGDDPYKVDLIQDLEDGNITCYQQGEFID- 152

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G HV S  ++    ++  S 
Sbjct: 153 LCRGPHVESVKQLKNFKLLKHSG 175


>gi|254517592|ref|ZP_05129648.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
 gi|226911341|gb|EEH96542.1| threonyl-tRNA synthetase [Clostridium sp. 7_2_43FAA]
          Length = 645

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 104/272 (38%), Gaps = 29/272 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRR 581
           EAG  + D   +I +G+       +    GI     +  R I+  +  L + T D Q  +
Sbjct: 15  EAGISVLDIAKSISEGLA------RNACCGIVNGKVVDLRYIVNEDSELAICTFDSQEGK 68

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
             ++ HS +H+L +A+  +  +     G  I  DG  +D       +S +L  IED +  
Sbjct: 69  D-ALRHSVSHVLAYAVKRLYPNAKLAIGPAIN-DGFYYDFDVENSFSSDDLVKIEDEMRK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTH 698
           I+ +N  +    + R +AI     A    K    ND      + +   G     LC G H
Sbjct: 127 IVKENPSIERFELPRAEAIKLMEDANEPYKVELINDLGEDEVISFYKMGDFVD-LCAGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + S   +  + ++      AG           A      +++ L  +     + + ++  
Sbjct: 186 LMSLKPVKAIKLLR----SAG-----------AYWKGDEKNKMLSRVYGTAFLKKADLDA 230

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            +E + EE +K       R+L++   D    +
Sbjct: 231 HLEAL-EEAKKRDHNKLGRELKIFTTDEKVGQ 261


>gi|331082613|ref|ZP_08331736.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400232|gb|EGG79874.1| threonyl-tRNA synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 658

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 23/190 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D  H +  +  EL ++E  +  II
Sbjct: 69  ALRHTASHVLAEAVKNLYPEAKLAIGPSIDT-GFYYDFDH-ESFSREELDALEKEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    M RE+AI        G  Y   +     E E+   +S      LC G H+
Sbjct: 127 KKGAKIQRYTMPREEAIKF--MEEKGEDYKVELIKDLPEGEEISFYSQGDFVDLCAGPHL 184

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    ++S S                A      +++ L  +       +  +   
Sbjct: 185 MSTKGVKAFKLISSSG---------------AYWRGDEKNKMLSRIYGTAFSKKDELNEY 229

Query: 760 VEEIWEEYRK 769
           +E++ E  ++
Sbjct: 230 LEQLEEAKKR 239


>gi|301061986|ref|ZP_07202704.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
 gi|300443910|gb|EFK07957.1| threonine--tRNA ligase [delta proteobacterium NaphS2]
          Length = 483

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +H++  A+  +        G  I  DG  +D  + +P    +L  +E+ +++II 
Sbjct: 74  LRHSTSHVMAMAVRELFPGVKVTIGPAI-KDGFYYDFDYKRPFKEDDLPLVEEKMHEIIE 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            +LP   +     +A+A   A   G  Y   + +  ++ E   +++      LC G H+ 
Sbjct: 133 ADLPFTRKETAVSEALAFFKAQ--GEDYKVEL-IEDLDAEMVSLYTQGSFTDLCRGPHIP 189

Query: 701 STGEIMLLYIVSESS 715
           STG I   +++  + 
Sbjct: 190 STGMIKAFHLIKTAG 204


>gi|42520791|ref|NP_966706.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|73919843|sp|Q73GH6|SYT_WOLPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|42410531|gb|AAS14640.1| threonyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 633

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +  +     G  I  DG  +D    +  T+ +L +IE  + +I+ 
Sbjct: 69  IRHDAAHIMAQAVKELFPNTQITIGPTIQ-DGFYYDFATDRTFTTDDLTAIEKKMKEIVK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
            N   V  +  R+ ++     + +G KY   +     E E+  V+       LC G H  
Sbjct: 128 SNHRFVREVWTRKQSVDFF--SGIGEKYKVDIISSIPEGENLTVYRQGDFVDLCRGPHSP 185

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 186 STGRVKAFKLMK---VAGAYWR 204


>gi|194477315|ref|YP_002049494.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
 gi|171192322|gb|ACB43284.1| Threonyl-tRNA synthetase, class IIa [Paulinella chromatophora]
          Length = 599

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 23/242 (9%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L I HS +H++  A+  +  +     G   T  G  +D  + +P T A+LKSI+  + 
Sbjct: 23  QLLKIRHSMSHVMAMAVQKLFPNAQITIGPW-TESGFYYDFDNPEPFTEADLKSIKKGMI 81

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS-VEYEDGGVHSSALCGGTHV 699
            II QNL      + R+D      A     K      ++  +     G     LC G HV
Sbjct: 82  KIINQNLNFERVEVTRQDVACRIKAQNEPYKLEILAGLIEPITIYKLGEQWWDLCAGPHV 141

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           ++T E+         S+     R     G         +  KL+ +      +   +   
Sbjct: 142 NNTNELNP-KAFDLESVAGSYWR-----GD-------EKKAKLQRIYGTAWETPEQL--- 185

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                EEY++ +    +R  +    DL    I D      +    +   ++ +++   ++
Sbjct: 186 -----EEYKRRKKEALRRDHRRLGTDLDLFSIEDEAGSGLVFWHPNGARIRLLIEDFWRQ 240

Query: 820 IQ 821
             
Sbjct: 241 SH 242


>gi|260589197|ref|ZP_05855110.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
 gi|260540278|gb|EEX20847.1| threonine--tRNA ligase [Blautia hansenii DSM 20583]
          Length = 658

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 23/190 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A+H+L  A+  +        G  I   G  +D  H +  +  EL ++E  +  II
Sbjct: 69  ALRHTASHVLAEAVKNLYPEAKLAIGPSIDT-GFYYDFDH-ESFSREELDALEKEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    M RE+AI        G  Y   +     E E+   +S      LC G H+
Sbjct: 127 KKGAKIQRYTMPREEAIKF--MEEKGEDYKVELIKDLPEGEEISFYSQGDFVDLCAGPHL 184

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    ++S S                A      +++ L  +       +  +   
Sbjct: 185 MSTKGVKAFKLISSSG---------------AYWRGDEKNKMLSRIYGTAFSKKDELNEY 229

Query: 760 VEEIWEEYRK 769
           +E++ E  ++
Sbjct: 230 LEQLEEAKKR 239


>gi|328953980|ref|YP_004371314.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
 gi|328454304|gb|AEB10133.1| threonyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109]
          Length = 640

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+ ++        G  I  +G  +D    +P T+ +L  IE  + +++ 
Sbjct: 73  LRHSAAHIMAEAVRSLFPGVKITIGPAI-ENGFYYDFDPPRPFTTEDLGRIEARMWNLVE 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           Q+LP + R ++ ++A+    A   G  Y      D        Y+ GG     LC G H+
Sbjct: 132 QDLPFIRREVSWQEALDYFQAQ--GETYKVELLQDLKDQQVSLYQQGGF--VDLCRGPHI 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            S+G +    + S   +     R
Sbjct: 188 PSSGYLSAFKLTS---VAGAYWR 207


>gi|260434317|ref|ZP_05788287.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
 gi|260412191|gb|EEX05487.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8109]
          Length = 611

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 23/245 (9%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           ++ + L I HS +H++  A+  +        G   T  G  +D  +  P T A+LK+I+ 
Sbjct: 30  ESDQLLRIRHSMSHVMAMAVQQLFPKARVTIGPW-TETGFYYDFDNPDPFTEADLKAIKK 88

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGG 696
            +  II + LP+    ++R +A     A     K          +     G     LC G
Sbjct: 89  GMIKIINKKLPLERVEVSRNEAEEKIKAQNEPYKLEILEGLQEPITVYTLGEDWWDLCAG 148

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV  TG++         S+     R     G   ++ L             L       
Sbjct: 149 PHVDHTGQLNA-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWETPEQL------- 195

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
                    E+++ +    +R  +   +DL    I D      +        ++ +++  
Sbjct: 196 --------AEHKRRKEEALRRDHRRIGKDLDLFSIEDEAGAGLVFWHPRGARMRLLIEEF 247

Query: 817 QKKIQ 821
            ++  
Sbjct: 248 WRQAH 252


>gi|261337772|ref|ZP_05965656.1| threonine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277225|gb|EFA23079.1| threonine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 681

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 34/212 (16%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + +D  +   +   HSATH++  A+  +        G  I  +G  +D  
Sbjct: 48  PLNDGDIVESIMLDSPDGLAIMR-HSATHVMAQAVQELRPDAKLGIGPVI-ENGFYYDFD 105

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-------GTKYNDR 675
             +P T  +LK+IE  +  II  +     R++  ++A+ + A                D 
Sbjct: 106 VEEPFTPDDLKTIEKTMQRIIKSSQRFQRRVVTEQEALDAEADQPYKIELIEDKEAALDT 165

Query: 676 VRVVSVEYEDGGVHSS----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIR---- 721
                + +++   + +           LC G H+ +T  I    +       A       
Sbjct: 166 EAAQDISHKELSFYDNIDREGNVVWTDLCRGPHLPNTRFIKAFKL---ERAAAAYWKGSE 222

Query: 722 ------RIEAITGQRARSHLMGQDEKLKSLAS 747
                 RI  +     +  L    ++++  A 
Sbjct: 223 ANPMLQRIYGVA-FATKDELKAYQQRMEEAAK 253


>gi|329724705|gb|EGG61211.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU144]
          Length = 645

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D      ++S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVI-EGGFYYDFDMDDKVSSDDFDKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +V  ++++E A            Y   +     E E   +++      LC G HV 
Sbjct: 132 ENHKIVREVVSKEKAKDFF----KDDPYKLELIDAIPEDESVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|326803832|ref|YP_004321650.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651446|gb|AEA01629.1| threonine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 651

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 13/199 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG    D   +I + +  ++       E   +  AI   G +R           +    
Sbjct: 15  EAGVSGRDVAKSISNSLAKRVVAYTLNDELKGLDEAIESDGSIRLIDPKNKE--TEQEAL 72

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
             + HS+ HLL  AL  +        G  I  +G  +D  + +   ++  +L  +E  + 
Sbjct: 73  DILRHSSAHLLAQALRRLYPDIKFGVGPAI-ENGFYYDTDNGQGQQVSEEDLPRVEAEME 131

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ ++ PVV + ++RE+A            Y   +     E      +S      LC G
Sbjct: 132 KIVKEDYPVVGKEVSREEAKEIF----KNDPYKLEIIADLPEDATLTTYSQGEFTDLCRG 187

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV STG I    ++S + 
Sbjct: 188 GHVPSTGYIKHFKLLSLAG 206


>gi|108758923|ref|YP_631780.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
 gi|122981032|sp|Q1D6E3|SYT_MYXXD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108462803|gb|ABF87988.1| threonyl-tRNA synthetase [Myxococcus xanthus DK 1622]
          Length = 642

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G   T +G  +D    KP T  +L+ IE   N  + 
Sbjct: 75  IRHDAAHVVASAVQKLFPGTQVTIGPA-TEEGFYYDFFREKPFTPEDLEKIEAEANAELK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG----------VHSSALC 694
           +++  V   ++ ++A+      L   K  ++ +V  V+                     C
Sbjct: 134 RDMAFVRTEISMDEAV-----RLFEEK-GEKFKVEIVKDIAAKGAKTLTLYTHGDWVDFC 187

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G H  STG+I ++ I+S S 
Sbjct: 188 LGPHAPSTGKIGIIKILSSSG 208


>gi|57867165|ref|YP_188820.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251811076|ref|ZP_04825549.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875897|ref|ZP_06284764.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
 gi|71153576|sp|Q5HNM1|SYT_STAEQ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57637823|gb|AAW54611.1| threonyl-tRNA synthetase [Staphylococcus epidermidis RP62A]
 gi|251805411|gb|EES58068.1| threonyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294922|gb|EFA87449.1| threonine--tRNA ligase [Staphylococcus epidermidis SK135]
          Length = 645

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D      ++S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVI-EGGFYYDFDMDDKVSSDDFDKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +V  ++++E A            Y   +     E E   +++      LC G HV 
Sbjct: 132 ENHKIVREVVSKEKAKDFF----KDDPYKLELIDAIPEDESVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|24213940|ref|NP_711421.1| threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
 gi|59798590|sp|Q8F6R1|SYT_LEPIN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24194795|gb|AAN48439.1|AE011305_9 threonyl-tRNA synthetase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 638

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCIT--PDGLRFDVTHSKPI-TSAELKSIEDNVN 640
           +  HSA HLL  A+  +  +     G  I   P    +D+     I T  +   IE  + 
Sbjct: 71  TFQHSAAHLLGMAVQNLYKNANLTVGPVIDNGPGFFYYDIDFQGAIVTPEDFPKIEAEME 130

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGG 696
            I+  + PV  ++++++ AI +     LG KY     +  +  E+  ++       LC G
Sbjct: 131 KIVKADHPVWRKVVSKKQAIETFQK--LGEKYKIE-IIDGIPSEEVSIYGMGEWFDLCRG 187

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV ++G +    + + S 
Sbjct: 188 PHVPNSGILKSFKLTAISG 206


>gi|325295461|ref|YP_004281975.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065909|gb|ADY73916.1| threonyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 658

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HS  H+L  A+  + G    + G    T +G  +D      I+  +L  +E  +  II
Sbjct: 71  LRHSVAHILAKAVKRVYGKDKVKLGIGPATNEGFYYDFDLPTSISEEDLSKLEAEMEKII 130

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRV-RVVSVEYEDGGVHSSALCGGTHVSST 702
                     + RE A+         T+  D +     +     G     LC G H+   
Sbjct: 131 KAKETFRREEITREQALELFKDDPYKTELLDSISENEKITIYWLGEDFFDLCKGPHIEHA 190

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G +    ++S   +     R
Sbjct: 191 GMVKAFKLLS---VAGAYWR 207


>gi|324326401|gb|ADY21661.1| threonyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 639

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 70/174 (40%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++T+D     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITLDSDEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVQDLRKIEKEMKNIIKENINIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +     + E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPDEESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|126640661|ref|YP_001083645.1| threonyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978]
          Length = 549

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 10/145 (6%)

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
             +  +G  +D+   +P T  ++ +IE+ +  +I Q+  V+ ++  R++ I        G
Sbjct: 4   GPVIEEGFYYDIWMPRPFTLDDMAAIEERMKKLIDQDYDVIKKMTPRDEVIKVFTDR--G 61

Query: 670 TKYNDRVRVVSVEYEDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +Y  R+     E +  G++       +C G HV +T  +    +     I     R +A
Sbjct: 62  EEYKLRLVEDMPEEKAMGLYYHQEYVDMCRGPHVPNTKFLKSFKLTK---ISGAYWRGDA 118

Query: 726 ITGQRARSHLMGQDEKLKSLASFLK 750
              Q  R +     +K K LA+++K
Sbjct: 119 KNEQLQRIYGTAWADK-KQLAAYIK 142


>gi|45658307|ref|YP_002393.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59798553|sp|Q72PK6|SYT_LEPIC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|45601549|gb|AAS71030.1| threonyl-tRNA synthetase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 638

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCIT--PDGLRFDVTHSKPI-TSAELKSIEDNVN 640
           +  HSA HLL  A+  +  +     G  I   P    +D+     I T  +   IE  + 
Sbjct: 71  TFQHSAAHLLGMAVQNLYKNANLTVGPVIDNGPGFFYYDIDFQGAIVTPEDFPKIEAEME 130

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGG 696
            I+  + PV  ++++++ AI +     LG KY     +  +  E+  ++       LC G
Sbjct: 131 KIVKADHPVWRKVVSKKQAIETFQK--LGEKYKIE-IIDGIPSEEVSIYGMGEWFDLCRG 187

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV ++G +    + + S 
Sbjct: 188 PHVPNSGVLKSFKLTAISG 206


>gi|27468275|ref|NP_764912.1| threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|293366369|ref|ZP_06613048.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|38258358|sp|Q8CS74|SYT_STAES RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|27315821|gb|AAO04956.1|AE016748_190 threonyl-tRNA synthetase 1 [Staphylococcus epidermidis ATCC 12228]
 gi|291319494|gb|EFE59861.1| threonine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733742|gb|EGG70068.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU045]
 gi|329737259|gb|EGG73513.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU028]
          Length = 645

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  AL  + G      G  I   G  +D      ++S +   IE  +  I+ 
Sbjct: 73  LRHSTAHLMAQALKRLYGDVKFGVGPVI-EGGFYYDFDMDDKVSSDDFDKIEKTMKQIVN 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  +V  ++++E A            Y   +     E E   +++      LC G HV 
Sbjct: 132 ENHKIVREVVSKEKAKDFF----KDDPYKLELIDAIPEDESVTLYTQGEFTDLCRGVHVP 187

Query: 701 STGEIMLLYIVSESS 715
           ST +I    ++S + 
Sbjct: 188 STSKIKEFKLLSTAG 202


>gi|85705178|ref|ZP_01036278.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
 gi|85670500|gb|EAQ25361.1| threonyl-tRNA synthetase [Roseovarius sp. 217]
          Length = 648

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I+ +G  +D   + P T  +L  IE  + DII 
Sbjct: 74  IRHDLAHIMARAVQEIWPDVKVTIGPVIS-NGWYYDFDRAAPFTPEDLGLIEKKMKDIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
              PV T I +R+ AI        G  Y   +       E            LC G H+ 
Sbjct: 133 LRDPVRTEIWDRDRAIQHYRDT--GEPYKIELIEAIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
           +TG++      ++S   +     R
Sbjct: 191 NTGQVPADAFKLMS---VAGAYWR 211


>gi|86749289|ref|YP_485785.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris HaA2]
 gi|86572317|gb|ABD06874.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris HaA2]
          Length = 661

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+ ++        G  I  +G  +D   ++P T  +  +IE  +
Sbjct: 70  RALELIRHDCAHVLAEAVQSLWPGTQVTIGPTI-ENGFYYDFFRNEPFTPEDFGAIEKKM 128

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II ++ P    I +R++     A    G  +   +       +   ++       LC 
Sbjct: 129 REIIQRDKPFTKEIWSRDETKKVFADN--GEMFKVELVDAIPADQTIKIYKQGDWFDLCR 186

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG+I     ++    +     R
Sbjct: 187 GPHMTSTGKIGTAFKLMK---VAGAYWR 211


>gi|124486137|ref|YP_001030753.1| hypothetical protein Mlab_1319 [Methanocorpusculum labreanum Z]
 gi|124363678|gb|ABN07486.1| threonyl-tRNA synthetase [Methanocorpusculum labreanum Z]
          Length = 586

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
             I H+A H+L  A+  +   H +      T  G  +D+      ++  +L +IE  + +
Sbjct: 20  HVIRHTAAHVLAQAVKRLYP-HAAFGYGPATEKGFYYDIDLGDTKLSDTDLAAIEQEMRE 78

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+  NL +   I+ R +A+           Y         E E            +C G 
Sbjct: 79  IVKANLQIKPFILPRAEALK--LMEERKEPYKVEHIADLDENEPLSFFQQGEYIDMCTGP 136

Query: 698 HVSSTGEIMLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           H++ T  +    +   S       S    + RI      +G+     L  Q+E  + 
Sbjct: 137 HLTYTKTLKAFKLTGLSGAYWKNDSKNKMLTRINGTAFSSGKELEDFLKLQEEAERR 193


>gi|44662849|gb|AAS47506.1| threonyl tRNA synthetase [Meiothermus silvanus DSM 9946]
          Length = 149

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 19/152 (12%)

Query: 585 INHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             H+  H++  A+             V      +  +G  +D+   +P+   +L  IE  
Sbjct: 2   FRHTLAHVMAQAVREFFAAKGFDPDAVKLAIGPVIENGFYYDIDPPEPLGEGDLPEIEAR 61

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
           ++ I+ +NL +   ++ RE+A+           Y   +     E  +   ++        
Sbjct: 62  MHQIVKENLELRRFVLPREEALRRFEGK---DPYKTELIQDLPEGVEISFYAQGEGTHGF 118

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
             LC G HV STG I        + I     R
Sbjct: 119 TDLCRGPHVPSTGRIPPY--FKLTHIAGAYWR 148


>gi|119774900|ref|YP_927640.1| threonyl-tRNA synthetase [Shewanella amazonensis SB2B]
 gi|166225496|sp|A1S6G4|SYT_SHEAM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119767400|gb|ABL99970.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Shewanella
           amazonensis SB2B]
          Length = 642

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV     +T+ ++ ++E  + ++  
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDLEHKLTADDIAALEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-----DGGVHSSALCGGTHV 699
            +  VV R+++ ++A  +      G  Y   +   ++  +           + +C G HV
Sbjct: 130 TDYDVVKRVVSWQEARDTFEGR--GESYKMAILDENIAKDATPALYHHEEYTDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        ++S   +     R
Sbjct: 188 PNMRFCHHFKLMS---VAGAYWR 207


>gi|309776920|ref|ZP_07671890.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915331|gb|EFP61101.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 580

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 575 IDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-L 632
           ID +   +LS  NHS  H++  A+  +        G  I+ +G  +D+     +   E L
Sbjct: 4   IDIKEHEELSKLNHSCAHMMAQAVKRLYPQAKFWVGPVIS-EGFYYDIDLGDEVIKEEDL 62

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             IE  +  I      +V + +++++A+               +   ++     G     
Sbjct: 63  AKIEKEMKKIAKDGKRIVRKEISKDEAMEMFKDDPYKMDLIRDLADGTITCYQQGEFID- 121

Query: 693 LCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
           LC G HV +  ++    ++  S            ++RI  I 
Sbjct: 122 LCRGPHVDTVKQLKNFKLLKHSGAYWKGDASNKMLQRIYGIC 163


>gi|328947096|ref|YP_004364433.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
 gi|328447420|gb|AEB13136.1| threonyl-tRNA synthetase [Treponema succinifaciens DSM 2489]
          Length = 585

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 15/166 (9%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSA 630
           + +D    +  +I HS  H++  A+  +        G  I  +G  +D    +   + + 
Sbjct: 1   MAVDE---KLQTIRHSCAHVMAEAVLNLFPGTKIAIGPAI-ENGFYYDFDFPEGHKVCAE 56

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +  SIE  +  II+ N   + + +++ +A+          +    +    V         
Sbjct: 57  DFASIEKEMRKIISGNHDFIRKEVSKSEALELFKDQPYKEELIKELPEGEVITTYEQDGY 116

Query: 691 SALCGGTHVSSTGEI--MLLYIVSESS-------IRAGIRRIEAIT 727
             LC G HV++T EI      ++S +         R  + RI A+ 
Sbjct: 117 LDLCRGPHVANTKEINQQSFKLMSIAGAYWKGDVKRPMLTRIYAVC 162


>gi|269986728|gb|EEZ93008.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 295

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 10/222 (4%)

Query: 584 SINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +  H+A H+   AL       HV +  +    D  +  +   + I   ++   E  VN+ 
Sbjct: 8   ARLHTAEHMFARALQEQGLDIHVRKADTYREDDIGKVYI--KEIIPFEKITLAEKRVNEK 65

Query: 643 IAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +NL V      N ++A  +           D+ + V V     G +  + C   HV  
Sbjct: 66  ILENLAVKEENFENLDEATKNNPKLRFNEDRLDKEKEVRVIS--IGDYDFSACKHLHVKQ 123

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T EI++   V   S   G   IE + G  A   LM    ++ + A         ++  ++
Sbjct: 124 TKEIVMFT-VKRISYLGGETEIEFLAGTYALMFLMQIKNQVINAAMERHFIPEKILDYIK 182

Query: 762 EIWEEYRKLQLIHAK---RKLQLNVEDLSCHKIADVNFMSHI 800
              E   +L+    +   R L+ N + +   ++    F   +
Sbjct: 183 NENERTNELEKEEKEIFYRILEENPQVILLKEVKISKFYGEL 224


>gi|254511025|ref|ZP_05123092.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221534736|gb|EEE37724.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 652

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 78  IRHDLAHIMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGQIEKKMKEIIN 136

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +  PV T + +R+ AI    A      Y   +       E            LC G H+ 
Sbjct: 137 KRDPVTTEVWDRQRAIDFYTAN--NEPYKVELIDAIPGDEPLRMYWHGDWQDLCRGPHLQ 194

Query: 701 STGEI--MLLYIVSESSI-------RAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
            TG++      ++S +         RA ++RI  +  TG+     HL   +E  K 
Sbjct: 195 HTGQVPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLHMLEEAAKR 250


>gi|157364839|ref|YP_001471606.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
 gi|166987326|sp|A8F8Q8|SYT_THELT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157315443|gb|ABV34542.1| threonyl-tRNA synthetase [Thermotoga lettingae TMO]
          Length = 638

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 13/139 (9%)

Query: 585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDI 642
             H+ +H+L  A+  + G  +V         +G  +D    +  IT  +L  IE+ +  I
Sbjct: 66  YRHTMSHILAQAVMNVYGKKNVRLGIGPAIENGFYYDFEILNGKITEEDLSRIEEEMKKI 125

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGG 696
           I QN+PV    M+++DA      + +  K       +  E +D  V          LC G
Sbjct: 126 IEQNIPVERIEMSKDDA-----ISFMTEKDQPYKVELLKEIQDNKVTLFKQGDFVDLCRG 180

Query: 697 THVSSTGEIMLLYIVSESS 715
            H+ STG +    ++S S 
Sbjct: 181 PHMPSTGMVKHFKLLSVSG 199


>gi|162447220|ref|YP_001620352.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
 gi|189083597|sp|A9NF46|SYT_ACHLI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|161985327|gb|ABX80976.1| threonyl-tRNA synthetase [Acholeplasma laidlawii PG-8A]
          Length = 642

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 4/161 (2%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             +NHSA HL+  A+  +    +   G  I               T A+L+ +E  +  +
Sbjct: 69  HVLNHSAAHLMAQAIRKLYPDALFGVGPAIEEGYYYDVDFKDSVFTDADLEEVEKMMKKL 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +N  +    ++ ++A           +  +  +   +     G     LC G HV ST
Sbjct: 129 SEENHLIERIEVSYDEARDIFKNDPYKLELIEVYKDDQLSVYRQGEFID-LCRGGHVPST 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
             I    ++S   I     R +A   Q  R + +   EK +
Sbjct: 188 KYIKHFKLLS---IAGAYWRGDAKNRQLVRVYGIAYFEKAE 225


>gi|115524346|ref|YP_781257.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisA53]
 gi|115518293|gb|ABJ06277.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase
           [Rhodopseudomonas palustris BisA53]
          Length = 679

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H+L  A+ T+        G  I  +G  +D   ++P T  +  +IE  +
Sbjct: 91  RALELIRHDAAHVLAEAVQTLWPGTQVTIGPTI-ENGFYYDFFRNEPFTPEDFAAIEKKM 149

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +IIA++ P    + +RE           L   +  D +                LC G 
Sbjct: 150 REIIARDKPFTKDVWDREKTKQVFRDKGELFKVELVDAIPGNDPIKIYNQGEWFDLCRGP 209

Query: 698 HVSSTGEIM-LLYIVSESSIRAGIRR 722
           H++STG+I     ++    +     R
Sbjct: 210 HMTSTGKIGNAFKLMK---VAGAYWR 232


>gi|197284912|ref|YP_002150784.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227355315|ref|ZP_03839716.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
 gi|238693141|sp|B4ETK6|SYT_PROMH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194682399|emb|CAR42252.1| threonyl-tRNA synthetase [Proteus mirabilis HI4320]
 gi|227164539|gb|EEI49410.1| threonyl-tRNA synthetase [Proteus mirabilis ATCC 29906]
          Length = 642

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 24/224 (10%)

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           V+   L  + S +  I  ++   L I  HS  HLL HA+  +        G  I  +G  
Sbjct: 45  VDACELIEQDSQLAIITAKDDEGLEIIRHSCAHLLGHAIKQLWPQTKMAIGPVI-ENGFY 103

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678
           +DV     +T  +L+++E  + ++   +  V+ + +    A  +  A   G  Y   +  
Sbjct: 104 YDVDLDHSLTQEDLETLEKRMLELAKTDYDVIKKRVTWAQARETFVAR--GEDYKVAILD 161

Query: 679 VSVEYE-----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733
            ++  +             +C G HV +        +     I     R           
Sbjct: 162 ENISQDAHPALYHHQEYIDMCRGPHVPNMRFCHHFKL---QKIAGAYWR----------- 207

Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                ++ L+ +       +  +   +E + E  ++      K+
Sbjct: 208 -GNSDNKMLQRIYGTAWADKKQLKAYLERLEEAAKRDHRKIGKQ 250


>gi|229133217|ref|ZP_04262049.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
 gi|228650236|gb|EEL06239.1| Threonyl-tRNA synthetase [Bacillus cereus BDRD-ST196]
          Length = 639

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G     +   R  +     + ++T+D     +++  HSA H+L  A+  I G  V
Sbjct: 37  KKAVAGKVNDKSFDLRRNIEESAKVEIITMDSDEGVKIAR-HSAAHILAQAVKRIYGD-V 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLQSSVNVEDLPKIEKEMKNIINENVKIERVEVSREEAKELF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|157828174|ref|YP_001494416.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166225494|sp|A8GR83|SYT_RICRS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157800655|gb|ABV75908.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 635

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  + ++  
Sbjct: 71  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFTNDDLAVIEAKMQELSQ 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 130 KNEQVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGNFIDLCRGPHSP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 188 STGVVKHFKLMK---VAGAYWR 206


>gi|146339967|ref|YP_001205015.1| threonyl-tRNA synthetase [Bradyrhizobium sp. ORS278]
 gi|146192773|emb|CAL76778.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Bradyrhizobium sp. ORS278]
          Length = 688

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 575 IDYQN-RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D  + R    I H   H+L  A+  +        G  I  +G  +D   ++P T  +  
Sbjct: 92  VDRDDPRALELIRHDCAHVLAEAVQALWPGTQVTIGPVI-ENGFYYDFFRNEPFTPEDFA 150

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
           +IE  + +II ++ P    + +RE           G  +   +       E   ++    
Sbjct: 151 AIEKKMREIIGRDKPFTKEVWDRE--KTKQVFRDKGEAFKVELVDAIPGNEPIKIYYQGD 208

Query: 692 --ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
              LC G H++STG+I     ++    +     R
Sbjct: 209 WFDLCRGPHMTSTGKIGNAFKLMK---VAGAYWR 239


>gi|258404181|ref|YP_003196923.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257796408|gb|ACV67345.1| threonyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 649

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+ ++  +     G  I  DG  +D    +  T  +L++IE  +   + 
Sbjct: 71  IRHSTAHVMAEAVKSLFPTAKVTIGPDI-EDGFYYDFDFERSFTPEDLEAIEKEMEKSVG 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            ++P   R ++ ++A           K     +        Y   G     LC G HV S
Sbjct: 130 ADMPFERREVSVDEAKKFFLHQNESYKIELLEEMDADRVTLYTHNGFTD--LCRGPHVPS 187

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG +    ++    +     R                   L+ +         ++   ++
Sbjct: 188 TGYLSAFKLMK---VAGAYWR------------GDENRTMLQRIYGTAWARPKDLKNYLQ 232

Query: 762 EIWEEYRK 769
           ++ E  ++
Sbjct: 233 QLEEAKKR 240


>gi|315656661|ref|ZP_07909548.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492616|gb|EFU82220.1| threonine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 669

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 41/230 (17%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++   TID +    +   HS TH++  A+  +  +     G  I  +G  +D  
Sbjct: 46  ELHDGDTVEAITIDSEMGLNILR-HSCTHVMAQAVKQVRPNVKYGIGPFI-ENGFYYDFG 103

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-----AIASGAAALLGTKYNDRVR 677
             +P T  +L +IE  +  I  ++   V R++  ++     A       L+G K  D   
Sbjct: 104 VDEPFTPEDLIAIEKYMARICKEDQKFVRRVVTEDEGRAELADQPYKLELIGLKGTDSDN 163

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G HV ST  +  +  ++    + A 
Sbjct: 164 DQAAAGASVEVGGSELTIYDNVRKNGEVAWKDLCRGPHVPSTRLLNGVFKLMK---VSAA 220

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             R     G +A       ++ L+ +      ++ ++   V  + E  ++
Sbjct: 221 YWR-----GDQA-------NDSLQRIYGTAWATKDDLKEYVTRMEEAAKR 258


>gi|305432763|ref|ZP_07401922.1| threonine--tRNA ligase [Campylobacter coli JV20]
 gi|304444160|gb|EFM36814.1| threonine--tRNA ligase [Campylobacter coli JV20]
          Length = 610

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 18/242 (7%)

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
           ++++  ++K+         IV+     +     +  D        I HS  HL+  A+ +
Sbjct: 3   KIRLKVMEKEVIAYLDDEKIVDSQSKNSIDLKEIYFDNSKESLEVIRHSCAHLMAQAIKS 62

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +        G  I  DG  +D   +  I   +L  IE  + +++     +    + + +A
Sbjct: 63  LYPEAKFFVGPVI-EDGFYYDFRVNSKIGEEDLAKIEKKMKELVEAKQEIEKYEITKNEA 121

Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           IA      L  +   R+    V     G     LC G HV +T  +    +         
Sbjct: 122 IAKFKDDDLKQEVLLRIPDGKVSIYKQGEF-EDLCRGPHVPNTKFLRNFSLTR------- 173

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
                 + G  A      + E L  +       + ++   +  I EE +K        +L
Sbjct: 174 ------VAG--AYLGGDEKREMLTRIYGTAFADKESLKEHL-RIIEEAKKRDHRKLGTEL 224

Query: 780 QL 781
           +L
Sbjct: 225 KL 226


>gi|165932872|ref|YP_001649661.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
 gi|165907959|gb|ABY72255.1| threonyl-tRNA synthetase [Rickettsia rickettsii str. Iowa]
          Length = 644

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A HL   A+  +        G  I  +G  +D    KP T+ +L  IE  + ++  
Sbjct: 80  IRHDAAHLTAEAVKELFPETQVTIGPAI-ENGYYYDFARDKPFTNDDLAVIEAKMQELSQ 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N  V   + +R+ A+    +  +G  Y   +       E   ++       LC G H  
Sbjct: 139 KNEQVTRELWDRDKAVEFFKS--IGEHYKAEIIASIPAGEPITLYRQGNFIDLCRGPHSP 196

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    ++    +     R
Sbjct: 197 STGVVKHFKLMK---VAGAYWR 215


>gi|317010401|gb|ADU84148.1| threonyl-tRNA synthetase [Helicobacter pylori SouthAfrica7]
          Length = 612

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 12/171 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +  
Sbjct: 49  MIRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFA 107

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              L +   ++ RE A+       L      ++   +      G     LC G H+ +T 
Sbjct: 108 KSKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTR 166

Query: 704 EIMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
            +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 167 FLNHFKLTKLAGAYLGGDEKNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|85716379|ref|ZP_01047351.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
 gi|85696736|gb|EAQ34622.1| threonyl-tRNA synthetase [Nitrobacter sp. Nb-311A]
          Length = 679

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H+L  A+ T+        G  I  +G  +D   ++P +  +  +IE  +
Sbjct: 91  RALELIRHDAAHVLAEAVQTLWPGTQVTIGPVI-ENGFYYDFFRNEPFSVEDFAAIEKKM 149

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++ P    + +RE           G  +   +       E   ++       LC 
Sbjct: 150 REIIARDKPFTKDVWDRE--KTKQVFRDKGETFKVELVDAIPGNEPIKIYYQGDWFDLCR 207

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG+I     ++    +     R
Sbjct: 208 GPHMTSTGKIGNAFKLMK---VAGAYWR 232


>gi|282855610|ref|ZP_06264924.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
 gi|282586540|gb|EFB91794.1| threonine--tRNA ligase [Pyramidobacter piscolens W5455]
          Length = 640

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 28/196 (14%)

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                +   +   +K  + +  H A V+     TE  + +             HS  HLL
Sbjct: 28  LDKGAVAAFVDGEEKDLDVVIDHDAEVKPITPETEEGIEIV-----------RHSTAHLL 76

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+  +  +     G  I  DG  +D+   + ++   L ++E  +  I  +++P+    
Sbjct: 77  AEAVMNLYPAAKVAIGPTI-KDGFYYDIEFPETVSEEILPALEKEMRRIAKRSIPLRRER 135

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIM 706
           +   DAI      L   + ND  +V  +E                 LC G HV +T  + 
Sbjct: 136 VGVADAIK-----LFRER-NDPYKVEILEGVGDETVNLYWQDDYVDLCRGPHVPNTRFLK 189

Query: 707 LLYIVSESSIRAGIRR 722
              ++S   +     R
Sbjct: 190 HFKLLS---MAGAYWR 202


>gi|114767278|ref|ZP_01446118.1| threonyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601]
 gi|114540584|gb|EAU43657.1| threonyl-tRNA synthetase [Roseovarius sp. HTCC2601]
          Length = 649

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 17/176 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  +T  G  +D   ++P T  +L  IE  + DII 
Sbjct: 74  IRHDLAHVMARAVQEIWPDTKVTIGP-VTEHGWFYDFDRAEPFTPEDLGQIEAKMKDIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
              PV T I  R+ A A       G  Y   +     E     ++       LC G H+ 
Sbjct: 133 AREPVTTEIWERDRARAFYEEN--GEPYKVELVDRIPEGAPIRMYWHGGWQDLCRGPHLQ 190

Query: 701 STGEIML--LYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            TG++      ++  S         R  ++R++ +   R R  L G    L+  A 
Sbjct: 191 HTGQLPADSFKLMGVSGAYWFGDVNRPMLQRVQGVA-FRNRKDLQGYLNFLEEAAK 245


>gi|260655005|ref|ZP_05860493.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
 gi|260630320|gb|EEX48514.1| threonine--tRNA ligase [Jonquetella anthropi E3_33 E1]
          Length = 623

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS+ HLL  A++ +    V   G  I  DG  +D+   +PI+ ++L  IE  +  I+ 
Sbjct: 54  IRHSSAHLLADAVTRLFPGAVPAIGPVI-KDGFYYDIQFPQPISESDLPRIEKEMQRIVK 112

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVHSSALCGGTHVSSTG 703
           + +P+    +   +AI          K      V   +           LC G HV +T 
Sbjct: 113 KCVPLERISVTVPEAIQLFKERKDPYKVEILEGVTDPQVNVYWQDTYVDLCRGPHVPNTK 172

Query: 704 EIMLLYIVSESSIRAGIRR 722
            +  + ++S   +     R
Sbjct: 173 FLRHVKLLS---VAGAYWR 188


>gi|320159528|ref|YP_004172752.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
 gi|319993381|dbj|BAJ62152.1| threonyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
          Length = 623

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 14/149 (9%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS +H++  A+  +  +     G  I  DG  +D    + +T  +L+ IE  + +II  
Sbjct: 39  RHSCSHIMAQAVLELFPNAKYAIGPAI-EDGFYYDFDLPRTLTPEDLEHIEKRMKEIIKG 97

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------------AL 693
           N   + + ++ E+A           +  D +    V+ +   +                L
Sbjct: 98  NHDFIRQEVSAEEARQIFKDQPYKLELIDGLEKGEVDEDGNPLEEKPVISIYKHDKFVDL 157

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           C G HV++T EI     V    +     R
Sbjct: 158 CRGPHVANTREINP-KAVKLMQVSGAYWR 185


>gi|99081562|ref|YP_613716.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
 gi|123077585|sp|Q1GFW2|SYT_SILST RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|99037842|gb|ABF64454.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ruegeria sp.
           TM1040]
          Length = 648

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGTIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +  PV T +  RE AI           Y   +       E            LC G H+ 
Sbjct: 133 KREPVTTEVWEREKAIQYYTDN--NEPYKVELIDSIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
            TG++      ++S   I     R
Sbjct: 191 HTGQVPGDAFKLMS---IAGAYWR 211


>gi|254444928|ref|ZP_05058404.1| threonyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
 gi|198259236|gb|EDY83544.1| threonyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235]
          Length = 610

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 23/191 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS++H+L  A+  +        G   T  G  +D       T+ +L+ IE  +  +I
Sbjct: 10  EIRHSSSHVLATAVLRLFPDAKLDIGPP-TDTGFYYDFDLEHKFTADDLEKIEAEMKKVI 68

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
            +N       ++RE+A+        G T+Y         E E    + +     LC G+H
Sbjct: 69  KENQRFERIEVSREEAVKM--ITDFGQTEYKLGRLADIPEGEQVSFYRNGEFLDLCAGSH 126

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V+ T +I    ++S             I G  A       +++L+ +      S+  +  
Sbjct: 127 VNYTKKIKAFKLLS-------------IAG--AYHRGDENNKQLQRIYGTAFPSKAELET 171

Query: 759 RVEEIWEEYRK 769
            +E+I E  ++
Sbjct: 172 YIEQIEESRKR 182


>gi|91201672|emb|CAJ74732.1| strongly similar to threonyl-tRNA synthetase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 640

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +        G  I  +G  +D       T+ +LK IED +  II 
Sbjct: 71  IRHSTAHIMAQAVCRLFPGVKLGIGPTI-ENGFYYDFDCPNHFTTEDLKKIEDEMLKIIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +++      M RE A+        G  Y   + +  +E +    +       LC G H+ 
Sbjct: 130 EDIRFERTDMPRELAVKE--MEKSGQPYKVEL-IRDIEDDTVSFYRQNEFIDLCRGPHIQ 186

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
            TG +    ++S +          + ++RI      T +  + +L   +E  K 
Sbjct: 187 KTGRVKSFKLLSVAGAYWRGKETNSMLQRIYGTAFFTNEDLKKYLKMLEEAEKR 240


>gi|291165911|gb|EFE27958.1| threonine--tRNA ligase [Filifactor alocis ATCC 35896]
          Length = 655

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +I H+A+H+L  A+  +        G  I   G  +D+ H+ P T  +L ++E  +  II
Sbjct: 69  TIRHTASHVLAEAVKRVFPDAKLAIGPAIDT-GFYYDIDHA-PFTREDLDTLEKEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTH 698
            ++  +    + RE+AI           Y      D      + +   G     LC G H
Sbjct: 127 KEDEKITKFELPREEAIK--LMEEKNEPYKVELIQDLPEDAVISFYQQGEEFIDLCAGPH 184

Query: 699 VSSTGEIMLLYIVSES 714
           + ST  I    ++S S
Sbjct: 185 LMSTKGIKAYKLISSS 200


>gi|229167201|ref|ZP_04294942.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
 gi|228616239|gb|EEK73323.1| Threonyl-tRNA synthetase [Bacillus cereus AH621]
          Length = 639

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 12/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G     +   R  +     + ++T+D     +++  HSA H+L  A+  I G  V
Sbjct: 37  KKAVAGKVNDQSFDLRRNIEESAKVEIITMDSDEGVKIAR-HSAAHILAQAVKRIYGD-V 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L  IE  + +II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLQSSVNVEDLPKIEKEMKNIINENVKIERVEVSREEAKELF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
             +       +       E   ++       LC G H+ STG +    +   S +     
Sbjct: 153 QEMNDSLKLELLEAIPNGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQL---SHVSGAYW 209

Query: 722 R 722
           R
Sbjct: 210 R 210


>gi|260425980|ref|ZP_05779959.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
 gi|260420472|gb|EEX13723.1| threonyl-tRNA synthetase [Citreicella sp. SE45]
          Length = 649

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 17/176 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I  +     G  +T +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHVMARAVQEIWPATKVTIGP-VTENGWFYDFDRAEPFTPEDLGAIEAKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
               V T I +R  A A       G  Y   +     E  D  ++       LC G H+ 
Sbjct: 133 ARDAVRTEIWDRARARAFYEER--GEGYKVELVDRIPEGADIRMYWHGEWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           STG++      ++  S         R  ++RI+ +   R R  L      L+  A 
Sbjct: 191 STGQLPADAFKLMGVSGAYWFGDVNRPMLQRIQGVA-FRNRDDLKKYLNFLEEAAK 245


>gi|159030629|emb|CAO88297.1| thrS [Microcystis aeruginosa PCC 7806]
          Length = 599

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           ++     I H+ +H++  A+  +        G   T  G  +D    +P T  +LK I+ 
Sbjct: 14  ESDHLKRIRHTTSHVMAMAVQKLFPQAQVTIGPW-TETGFYYDFDVPEPFTDKDLKDIKK 72

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALC 694
            +  II + LPV+   ++RE+A        +   Y   +       +     G     LC
Sbjct: 73  EMVKIINKKLPVIREQVSREEAEKR--IKAINEPYKLEILAGIQEPITLYHLGDAWWDLC 130

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            G H+ +T E+     +   ++     R
Sbjct: 131 AGPHLDNTSELDP-KAIELETVAGAYWR 157


>gi|323143349|ref|ZP_08078037.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
 gi|322416867|gb|EFY07513.1| threonine--tRNA ligase [Succinatimonas hippei YIT 12066]
          Length = 644

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 88/238 (36%), Gaps = 34/238 (14%)

Query: 527 QLGDTGCAIGDG-----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            + D   +IG G     +  +I  V   A  +  H A VE    + +  + +        
Sbjct: 19  SIADVASSIGPGLARNCVAGRIDGVLHDACDLIEHDAKVEIVTPKDKDGIEI-------- 70

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
              I HS  HLL HA+  +        G  I  +G  +DV     +T+ ++++++  +++
Sbjct: 71  ---IRHSCAHLLGHAIKELWPETKMAIGPVID-NGFYYDVDLDHKLTAEDMETLDAKMHE 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGG 696
           +   +  V+  +++ + A            Y   +   +++  D       +  + +C G
Sbjct: 127 LAKTDYKVIKEVVDWDTAYKVFDER--NEPYKKLILEENIDKADHPALYHHLEYTDMCRG 184

Query: 697 THVSSTGEIMLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
            HV   G      +   +       S    ++RI      T    +++L  ++E  K 
Sbjct: 185 PHVPRMGFCQNFKLTHFAGAYWRGNSKNKMLQRIYGTAWATKDELKAYLKKREEAAKR 242


>gi|283955362|ref|ZP_06372861.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
 gi|283793122|gb|EFC31892.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414]
          Length = 602

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 18/197 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D      I   +L  IE  + +++ 
Sbjct: 40  IRHSCAHLMAQAIKNLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELVE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIVISKYEITKNEALAKFQNDDLKQEVLSRIPDGTVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +               + G  A      + E L  +       + ++   +  I 
Sbjct: 158 LRFFKLTR-------------VAG--AYLGGDEKREMLTRIYGTAFADKESLKEYLT-II 201

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE +K        +L+L
Sbjct: 202 EEAKKRDHRKLGAELKL 218


>gi|226330401|ref|ZP_03805919.1| hypothetical protein PROPEN_04319 [Proteus penneri ATCC 35198]
 gi|225201196|gb|EEG83550.1| hypothetical protein PROPEN_04319 [Proteus penneri ATCC 35198]
          Length = 242

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I  +G  +DV     +T  +L+++E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPQTKMAIGPVI-ENGFYYDVDLDHSLTQEDLETLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSA----LCGGTHV 699
            +  V+ + ++  +A  +  +   G  Y   +   ++ +    G++       +C G HV
Sbjct: 130 TDYDVIKKRVSWAEARETFVSR--GEDYKVAILDENISQDSQPGLYHHQEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +        +     I     R
Sbjct: 188 PNMRFCHNFKL---QKIAGAYWR 207


>gi|220912797|ref|YP_002488106.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
 gi|254783507|sp|B8H9E8|SYT_ARTCA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|219859675|gb|ACL40017.1| threonyl-tRNA synthetase [Arthrobacter chlorophenolicus A6]
          Length = 669

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 41/242 (16%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +   + +   V G++ +V    T           +      D +  ++    K  +    
Sbjct: 1   MSDAQQITLLVDGEETKVTTGTT---------GAELFFERRDVVVARVNGELKDLD---- 47

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                    L     +             + HS  H++  A+  +        G  IT D
Sbjct: 48  -------QELPEGAEVEGVTIESPDGLNVLRHSTAHVMAQAVQQLRPDAKLGIGPYIT-D 99

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGT 670
           G  FD   ++P T  +LK++E  +  II QN   V R+++ ++A  +         LLG 
Sbjct: 100 GFYFDFDVAEPFTPEDLKTLEKMMQKIINQNQKFVRRVVSEDEAREAMKNEPYKLELLGK 159

Query: 671 K---------------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           K                 D     +VE ++G      LC G H+ +T  I   + ++ SS
Sbjct: 160 KNEAAEAGEGVNVEVGAGDITIYDNVERKEGTTVWCDLCRGPHLPNTKLISNAFALTRSS 219

Query: 716 IR 717
             
Sbjct: 220 SA 221


>gi|330836194|ref|YP_004410835.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
 gi|329748097|gb|AEC01453.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Spirochaeta
           coccoides DSM 17374]
          Length = 588

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 14/153 (9%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D    +   I HS  H++  A+  +  +     G  I  +G  +D    +P+   +L+ I
Sbjct: 11  DAAQEKLERIRHSMAHVMAEAVLQMFPTAQIAIGPVI-ENGFYYDFDLPRPLVKDDLEEI 69

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
            + +  IIA++ P +  +++R++A    +      KY   +       ED  ++      
Sbjct: 70  TERMKKIIAEDKPFIRTVVSRDEARRRFSDQ----KYKVELLDAIPADEDVSLYDQGGFI 125

Query: 692 ALCGGTHVSSTGEIM--LLYIVSESSIRAGIRR 722
            LC G HV+ST E+      ++   +I     R
Sbjct: 126 DLCRGPHVASTKELRSDSFALL---NIAGAYWR 155


>gi|75676225|ref|YP_318646.1| threonyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255]
 gi|74421095|gb|ABA05294.1| Ser-tRNA(Thr) hydrolase [Nitrobacter winogradskyi Nb-255]
          Length = 686

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H+L  A+ T+        G  I  +G  +D   ++P +  +  +IE  +
Sbjct: 90  RALELIRHDAAHVLAEAVQTLWPGTQVTIGPVI-ENGFYYDFFRNEPFSVEDFAAIEKKM 148

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++ P    + +RE           G  +   +       E   ++       LC 
Sbjct: 149 REIIARDQPFTKDVWDRE--KTKQVFRDKGEAFKVELVDAIPGNEPIRIYYQGDWFDLCR 206

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG+I     ++    +     R
Sbjct: 207 GPHMTSTGKIGNAFKLMK---VAGAYWR 231


>gi|166032032|ref|ZP_02234861.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
 gi|166028485|gb|EDR47242.1| hypothetical protein DORFOR_01734 [Dorea formicigenerans ATCC
           27755]
          Length = 643

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +H++  A+  +        G  I  +G  +D+    P  + +L+ IE  +  I+ ++
Sbjct: 72  HTTSHIMAQAIKRLYPETKLAIGPSI-ENGFYYDLDRETPFVAEDLEKIEKEMKKIVKED 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
           L +      R++AIA          Y   +     E  +   +       LC G H+ + 
Sbjct: 131 LEITRFTKPRDEAIAYF--KEKDEPYKVELIEDLPEDAEISFYQQGEFVDLCAGPHLMT- 187

Query: 703 GEIMLLYIVSESSIRAGIRR 722
                +  +  +S+     R
Sbjct: 188 --TKPVKAIKLTSLAGAYWR 205


>gi|283779278|ref|YP_003370033.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
 gi|283437731|gb|ADB16173.1| threonyl-tRNA synthetase [Pirellula staleyi DSM 6068]
          Length = 666

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 23/225 (10%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
            +  +     E+ + L           + HSA H++  A+  +        G  +   G 
Sbjct: 46  GVDTKLPESGEVKVRLLTRKDPEALGVMRHSAAHVMARAVMRLHQGVQLAFGPTV-EGGF 104

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDR 675
            +D    KP++  +  +IE  +  I+A++ P     ++R +A+A   G A     ++   
Sbjct: 105 YYDFQLPKPLSEEDFPAIEAEMKKIVAKDEPFERMDVDRSEALAMCEGLAQHYKVEHIST 164

Query: 676 VRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732
                     Y  G      LC G HV S G I    ++S             + G  A 
Sbjct: 165 GLAEHPSLSFYRQGEFLD--LCRGPHVPSAGAIGAFKLLS-------------LAG--AY 207

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                 + +L+ L +    +Q  +   + +I E  R+   +  K+
Sbjct: 208 WKGDSNNAQLQRLYATAFFTQEELDEHLRKIEEAKRRDHRLLGKQ 252


>gi|260578838|ref|ZP_05846745.1| threonine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258603136|gb|EEW16406.1| threonine--tRNA ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 667

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 34/238 (14%)

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
           G    + + + + ++ G     +   +  +    ++    D        I HS  H+L  
Sbjct: 10  GPEAIVCVKETEGESAGQLRDLSWAPQQDVEV-AAVPANTDEGR---GVIRHSCAHVLAQ 65

Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           A+           G  I  +G  +D   ++P T  +L  +E  +  II        +  +
Sbjct: 66  AVQKEFPGTKLGIGPAID-NGFYYDFQVAEPFTPEDLNKLEKTMKKIIKSGQKFERKAYD 124

Query: 656 R-EDAIASGAAALLGTKY-------------------NDRVRVVSVEYEDGGVHSSALCG 695
             E A A  A     T+                     +     +V    G V    LC 
Sbjct: 125 DVEQARAEYADEPFKTELIADKGNVDPDSDEATEVGAGELTAYSNVNPRTGEVEWYDLCR 184

Query: 696 GTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           G HV +T  I    +   S+        +AG++RI       + A +       + + 
Sbjct: 185 GPHVPTTRCIPAFALTRSSAAYWRGDQSKAGLQRIYGTAWESKEALAEYQTMMAEAEK 242


>gi|269139162|ref|YP_003295863.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|267984823|gb|ACY84652.1| threonyl-tRNA synthetase [Edwardsiella tarda EIB202]
 gi|304559086|gb|ADM41750.1| Threonyl-tRNA synthetase [Edwardsiella tarda FL6-60]
          Length = 642

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 91/239 (38%), Gaps = 17/239 (7%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +   +  D   ++ D  R     + K      V+  +V+   L    + V  I  +++ 
Sbjct: 7   PDGSQRHFDHPVSVMDIARDIGPGLAKACIAGRVNGELVDACDLIDADATVAIITAKDQE 66

Query: 582 QLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            +  + HS  HLL HA+  +        G  I  +G  +DV     +T  +L  ++  ++
Sbjct: 67  GVDILRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDLDHTLTQEDLDRLDKRMH 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCG 695
           ++  ++  V+ R ++ ++A  +  A      Y   +   ++ ++D  G++       +C 
Sbjct: 126 ELAEKDYDVIKRKVSWQEARDAFVAR--DEPYKVAILDENISHDDRPGLYHHEEYVDMCR 183

Query: 696 GTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G HV +        +   S            ++RI   T    +  L    ++L+  A 
Sbjct: 184 GPHVPNMRFCHHFKLQKSSGAYWRGDSDNKMLQRIYG-TAWADKKQLNAYLQRLEEAAK 241


>gi|88809590|ref|ZP_01125097.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
 gi|88786340|gb|EAR17500.1| threonyl-tRNA synthetase [Synechococcus sp. WH 7805]
          Length = 611

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 23/245 (9%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           +N + L I HS +H++  A+  +        G   T  G  +D  +  P T A+LK+I+ 
Sbjct: 30  ENEQLLKIRHSMSHVMAMAVQQLFPQARVTIGPW-TESGFYYDFDNPDPFTEADLKAIKK 88

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGG 696
            +  II + LP+    ++R  A A   A     K          +     G     LC G
Sbjct: 89  GMIKIINKKLPLERVEVSRSQAEAKIKAQNEPYKLEILEGLQEPITLYTLGEDWWDLCAG 148

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV  TG++         S+     R     G   ++ L             L       
Sbjct: 149 PHVDHTGQLNA-KAFELESVAGAYWR-----GDETKAQLQRIYGTAWETPEQL------- 195

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
                    E+++ +    +R  +   +DL    I D      +        ++ +++  
Sbjct: 196 --------AEHKRRKEEALRRDHRRIGKDLDLFSIEDEAGAGLVFWHPRGARMRLLIEDF 247

Query: 817 QKKIQ 821
            ++  
Sbjct: 248 WRQAH 252


>gi|323692292|ref|ZP_08106531.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
 gi|323503617|gb|EGB19440.1| threonyl-tRNA synthetase [Clostridium symbiosum WAL-14673]
          Length = 653

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 17/176 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+ +H+L  A+  +        G  I  +G  +D   ++P T  +L ++E  +  II
Sbjct: 69  AMRHTCSHVLAEAVKRMRPQAKLTIGPSI-ENGFYYDFD-TEPFTREDLDNLEKEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-----ALCGGTH 698
            +   +    + RE AI           Y   +     E E+   +        LC G H
Sbjct: 127 KEGQKLEKFTLTREAAIR--LMEERDEPYKAELIQELPENEEISFYRQGGDFTDLCAGPH 184

Query: 699 VSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           + ST  I    ++S S       S +A ++RI   T   ++  L    E L+ +  
Sbjct: 185 LMSTKPIKAFKLISSSMAYWRGDSSKAQLQRIYG-TAFASKEELNAYLEHLEDIKK 239


>gi|182414299|ref|YP_001819365.1| threonyl-tRNA synthetase [Opitutus terrae PB90-1]
 gi|177841513|gb|ACB75765.1| threonyl-tRNA synthetase [Opitutus terrae PB90-1]
          Length = 637

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 76/202 (37%), Gaps = 22/202 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS +H+L  A+  +        G   T  G  +D+      T+ +L  IE  +  I 
Sbjct: 8   ELRHSGSHILATAVLRLFPDAKLDIGPP-TDTGFYYDIDLDHKFTAEDLTRIEAEMKKIA 66

Query: 644 AQNLPVVTRIMNREDA----IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            +N P + + ++R++A     A G       +  D      + +   G     LC GTHV
Sbjct: 67  DENQPFLRKEVSRDEAVQIIKARGQERYKLGRLADIPADEKISFYQNGEF-VDLCAGTHV 125

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             T ++    +++             I G  A      ++++L+ +      ++  +   
Sbjct: 126 RYTSKLKAFKLLT-------------IAG--AYHRGDEKNKQLQRIYGTAFPTKEELAQY 170

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +E   E+ +        + L+L
Sbjct: 171 LER-QEQAKARDHRKLGKDLKL 191


>gi|229815156|ref|ZP_04445493.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
 gi|229809386|gb|EEP45151.1| hypothetical protein COLINT_02202 [Collinsella intestinalis DSM
           13280]
          Length = 595

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 11/167 (6%)

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                V           V  ++     Q  I HSA H++  A+  +        G   T 
Sbjct: 2   HRIGKVLDMKALYNDGSVAEVEADE-AQHVIRHSAAHIMAQAIKHLYPEADFAYGPA-TD 59

Query: 615 DGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY- 672
           +G  +DV    K I+  +L +IE  +  I+ +NL      + RE+AIA       G KY 
Sbjct: 60  NGFYYDVDLGDKKISEDDLPTIEAEMKKIVKENLKFQVFELPREEAIA--LMEERGEKYK 117

Query: 673 ----NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                D      + +   G +   +C G H++ T  +    +   S 
Sbjct: 118 VEHIGDLADDARITFYQQGDYID-MCVGPHLTYTKALKAFKLTGVSG 163


>gi|28572657|ref|NP_789437.1| threonyl-tRNA synthetase [Tropheryma whipplei TW08/27]
 gi|73919841|sp|Q83HM3|SYT_TROW8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28410789|emb|CAD67175.1| threonyl-tRNA synthetase [Tropheryma whipplei TW08/27]
          Length = 640

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 8/150 (5%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           + +D      +   HS  H+L  A+ +I G      G   T +G  +D + ++P +S  L
Sbjct: 38  IELDSPRGLDILR-HSCAHVLAQAVQSIYGDAKLGIGPF-TENGFYYDFSVNEPFSSDSL 95

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEY----EDGG 687
           + IED + +I+  +   V ++++R+ A +            N     +S+ Y    + G 
Sbjct: 96  RVIEDKMREIVHSDQKFVRKVVDRQSAHSQFRDEPFKLEIINATDDTLSIYYNIDADSGS 155

Query: 688 VHSSALCGGTHVSSTGEIM-LLYIVSESSI 716
           V     C G H+ ST  I     +   SS+
Sbjct: 156 VRWMDFCRGPHLPSTRFIGDAFALTHVSSV 185


>gi|90424612|ref|YP_532982.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
 gi|90106626|gb|ABD88663.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB18]
          Length = 679

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H   H+L  A+ T+        G  I  +G  +D   ++P T  +  +IE  +
Sbjct: 90  RALELIRHDCAHVLAEAVQTLWPGTQVTIGPTI-ENGFYYDFFRNEPFTPEDFAAIEKKM 148

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +II ++ P    + +RE           G  +   +       +   ++       LC 
Sbjct: 149 REIIGRDKPFTKDVWDRE--KTKQVFRDKGETFKVELVDAIPGNDLIKIYYQGDWFDLCR 206

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR-------IEAITGQRARSHLMGQDEKLKSLAS 747
           G H++STG+I     ++    +     R       +  I G  A +     D  LK +  
Sbjct: 207 GPHMTSTGKIGTAFKLMK---VAGAYWRGDSNNPMLTRIYGT-AFAKQEELDAYLKQIEE 262

Query: 748 FLK 750
             K
Sbjct: 263 AEK 265


>gi|299135303|ref|ZP_07028494.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
 gi|298590280|gb|EFI50484.1| threonyl-tRNA synthetase [Afipia sp. 1NLS2]
          Length = 681

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 19/183 (10%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H+L  A+ T+        G  I  +G  +D   ++P T  +  +IE  +
Sbjct: 91  RALELIRHDAAHVLAEAVQTLWPGTQVTIGPVID-NGFYYDFFRNEPFTPEDFAAIEKKM 149

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++ P    +  RE      +    G  +   +       +   ++       LC 
Sbjct: 150 REIIARDKPFTKEVWTREQTKQVFSDN--GEMFKVELLDAIPADQQIKIYKQGDWFDLCR 207

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR-------IEAITGQRARSHLMGQDEKLKSLAS 747
           G H++S G++     ++    +     R       +  I G  A +     D  LK L  
Sbjct: 208 GPHMTSVGKVGNAFKLMK---VAGAYWRGDSNNPMLTRIYGT-AFASQQDLDAYLKQLEE 263

Query: 748 FLK 750
             K
Sbjct: 264 AEK 266


>gi|260433159|ref|ZP_05787130.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416987|gb|EEX10246.1| threonyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 652

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 78  IRHDFAHVMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGLIEKKMKEIIN 136

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
           +  PV T I +RE AIA   A      Y   +       E   ++       LC G H+ 
Sbjct: 137 KRDPVTTEIWDRERAIAFYKAN--NEPYKVELIEAIPGDEPVRMYWHGHWQDLCRGPHLQ 194

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
            TG++      ++S   I     R
Sbjct: 195 HTGQLPGDAFKLMS---IAGAYWR 215


>gi|91977727|ref|YP_570386.1| threonyl-tRNA synthetase [Rhodopseudomonas palustris BisB5]
 gi|91684183|gb|ABE40485.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Rhodopseudomonas palustris BisB5]
          Length = 687

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 11/150 (7%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +R    I H   H+L  A+  +        G  I  +G  +D   ++P T  +  +IE 
Sbjct: 95  DSRALELIRHDCAHVLAEAVQALWPGTQVTIGPTI-ENGFYYDFFRNEPFTPEDFAAIEK 153

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----AL 693
            + +IIA++ P    +  R+      A    G  +   +       +   ++       L
Sbjct: 154 KMREIIARDKPFTKEVWTRDQTKQVFADN--GEMFKVELVDAIPADQSIKIYKQGDWFDL 211

Query: 694 CGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           C G H++STG+I     ++    +     R
Sbjct: 212 CRGPHMTSTGKIGSAFKLMK---VAGAYWR 238


>gi|237755902|ref|ZP_04584494.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691927|gb|EEP60943.1| threonyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 643

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 21/184 (11%)

Query: 542 QITDVQKKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
            +   +  +E + +H  I + G    L+ E    L I         + HS  H++  AL 
Sbjct: 34  DVVGGKLNSEIVDIHTPINQSGNLKFLKKEDKESLEI---------LRHSLAHIMAQALK 84

Query: 599 TILGSHVSQNG-SCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            I G      G    T  G  +DV    K +T  +L  IE+ + +II +   +    + R
Sbjct: 85  EIYGDENVHLGIGPTTEHGFYYDVEIEGKRLTDEDLPQIEEKMKEIIKKGYQIERFELPR 144

Query: 657 EDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIV 711
           E+AI           Y  D ++    E E   ++       LC G H+ ST +     ++
Sbjct: 145 EEAIKFFENK--KEIYKIDIIKHNIPEGEPISLYKQGDFVDLCRGPHLPSTDKAGAFKLI 202

Query: 712 SESS 715
             S 
Sbjct: 203 YVSG 206


>gi|296271847|ref|YP_003654478.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296096022|gb|ADG91972.1| threonyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 602

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  ++ +G  +D      I+  +L  IE  + ++  
Sbjct: 40  LRHSCAHLMAQAIKELYPEAKFFVGPVVS-EGFYYDFKVESKISDEDLPKIEKKMKELAN 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             LP+     +RE+      +  L      R+   ++     G     LC G H+ +T  
Sbjct: 99  AKLPIERYEASREEISQKFNSDELKQAVLSRITDDTLTMYKQGDF-EDLCRGPHLPNTRM 157

Query: 705 IMLLYIVSESSIRAG-------IRRIEAIT---GQRARSHLMGQDEKLKS 744
           I    +   +    G       I RI  I     Q    ++   +E  K 
Sbjct: 158 IRSFKLTRVAGAYLGGDEKNEMITRIYGIAFFDKQELFDYVKMLEEAKKR 207


>gi|326329871|ref|ZP_08196188.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
 gi|325952338|gb|EGD44361.1| threonine--tRNA ligase [Nocardioidaceae bacterium Broad-1]
          Length = 659

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +   +         + HS  H++  A+  +        G  +T DG  +D   
Sbjct: 50  ELADGDEVEGVLIDSKDGHDILRHSTAHVMAQAVQELFPEAKLGIGPPVT-DGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTK------- 671
             P    +L  IE  +  II  N     R+ + EDA            L+G K       
Sbjct: 109 ETPFVPEDLVKIESRMKKIIKANQKFSRRVTSDEDARVELADEPYKLELIGLKGSAADAA 168

Query: 672 -------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      + +      +G +    LC G H+ +T  I    ++      A   R
Sbjct: 169 EGADAEVGGGELTIYDNLDRNGEIAWKDLCRGPHLPTTKRIPAFKLM---RSAAAYWR 223


>gi|118591255|ref|ZP_01548654.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
 gi|118436331|gb|EAV42973.1| threonyl-tRNA synthetase [Stappia aggregata IAM 12614]
          Length = 656

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT-------SAEL 632
           R    I H A H++  A+  +        G  I  +G  +D     P T         EL
Sbjct: 66  RALELIRHDAAHVMAEAVQELWPGTQVTIGPVI-ENGFYYDFKRVHPDTGADWPFTPEEL 124

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
             IE  + +II +       + +R++A    AA   G  Y   +     E ++  ++   
Sbjct: 125 PVIEKKMREIIGRGAQFTKEVWSRDEAKRYFAAK--GETYKVELVDAIPEDQELKIYKQG 182

Query: 692 ---ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRI----EAITGQRARSHLMGQDEKLK 743
               LC G H+ ST +I     ++    +     R     E +T  R  +     +++LK
Sbjct: 183 QWLDLCRGPHMVSTRQIGDAFKLMK---VAGAYWRGDSNNEMLT--RIYATAWHSEKELK 237

Query: 744 SLASFLKVSQG 754
           +    L+ ++ 
Sbjct: 238 AYLHMLEEAEK 248


>gi|150021207|ref|YP_001306561.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
 gi|149793728|gb|ABR31176.1| threonyl-tRNA synthetase [Thermosipho melanesiensis BI429]
          Length = 636

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 90/251 (35%), Gaps = 27/251 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G   G+   +I +G+       +     I  +        +  + SL +         
Sbjct: 14  EKGITPGEIAKSISEGL------YRNAVGAIVDNILWDLNRPINFDCSLKIVTKKDKEAP 67

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCIT-PDGLRFDVT-HSKPITSAELKSIEDNVN 640
               H+  H+L  A+  I G    + G   T  +G  +D    +  I   +L++IE  + 
Sbjct: 68  EFFRHTMAHILAQAVMRIYGEENVRLGIGPTIENGFYYDFEILNGTIKEEDLENIEKEMK 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            II ++LP+    + +++AI        +   +  + +    V +   G     LC G H
Sbjct: 128 KIIKEDLPIERFELPKDEAIDMMNKKGQIYKVELINEINDEKVSFYKQGEFVD-LCRGPH 186

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           +  TG I    ++S S                A      ++  L+ +      ++  +  
Sbjct: 187 LPRTGMIKHFKLLSASG---------------AYWRGSEKNPMLQRIYGTAFATKEELEN 231

Query: 759 RVEEIWEEYRK 769
            + ++ EE +K
Sbjct: 232 YL-KMLEEAKK 241


>gi|51245280|ref|YP_065164.1| threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
 gi|50876317|emb|CAG36157.1| probable threonyl-tRNA synthetase [Desulfotalea psychrophila LSv54]
          Length = 657

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 10/142 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++ HA+  I GS V         +G  +D   S P T  + + IE  + +I+ 
Sbjct: 89  LRHSTAHIMAHAVRDIYGSDVKVAIGPSVDNGFYYDFLRSDPFTPEDFEKIEARMLEIVR 148

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
                   + +  +AIA         K      +  ++ E+  +++      LC G H+ 
Sbjct: 149 TGSLFEKTLYSSAEAIARFEKEEEKYK---VELIQDLDVEEVSIYTVGDFADLCRGPHLP 205

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  I    ++    +     R
Sbjct: 206 STSFIGAFKLL---RVAGAYWR 224


>gi|312113796|ref|YP_004011392.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218925|gb|ADP70293.1| threonyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 640

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 9/163 (5%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + T+  + +           I H A H++  A+  +        G  I  +G  +D   
Sbjct: 50  PIATDARVRIVTRDDPEALELIRHDAAHVMAEAVQELFPGTQVTIGPVI-ENGFYYDFYR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           ++  T  +L  IE+ + +IIA + P V  + +R  A    AA   G  +   +     E 
Sbjct: 109 AESFTPDDLAKIEEKMREIIAADKPFVKEVWSRAKAQDFFAA--EGEGFKVELIDAIPEG 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +D  ++       LC G H+ STG++          +     R
Sbjct: 167 QDLKIYRQGDWLDLCRGPHLPSTGKVG--KAFKLMRLAGSYWR 207


>gi|254796675|ref|YP_003081511.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
 gi|254589907|gb|ACT69269.1| threonyl-tRNA synthetase [Neorickettsia risticii str. Illinois]
          Length = 647

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H   H++  A+  +        G  I  DG  +D +   P + ++ + IE+ + +II 
Sbjct: 74  LRHDCAHIMAQAVQELYPETKLGIGPVID-DGFYYDFSTLAPFSDSDFEKIEEKIKEIIQ 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N P++    +R+DA++       G KY   +       E   ++       LC G H  
Sbjct: 133 RNYPIIREEWSRDDAVSFFQKK--GEKYKVELVSKIPPKEKISIYKQGDFIDLCRGPHAP 190

Query: 701 STGEIMLLYIVSES 714
           STG +    ++  S
Sbjct: 191 STGWLKHFKLLKVS 204


>gi|308233449|ref|ZP_07664186.1| threonyl-tRNA synthetase [Atopobium vaginae DSM 15829]
 gi|328944509|ref|ZP_08241970.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
 gi|327490910|gb|EGF22688.1| threonine--tRNA ligase [Atopobium vaginae DSM 15829]
          Length = 592

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 63/194 (32%), Gaps = 25/194 (12%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNV 639
           +  I HS  H+L  A+  +        G   T  G  +D+   +   I+  +L ++E  +
Sbjct: 19  EHVIRHSCAHMLAQAVKRLYPQAHFAYGPA-TETGFYYDMEFPEGVKISEDDLPALEAEM 77

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
             I  +NL V T  + R  AIA       G K+         E      +       +C 
Sbjct: 78  KKISKENLKVETFELPRAQAIAFLEER--GEKFKVEHIGDFPEDTRLTFYKQGEYVDMCT 135

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV  T       +   S                A       +E L  ++    V++  
Sbjct: 136 GPHVCYTKMAKAFKLTGVSG---------------AYWKANSDNEMLTRISGVAFVTKEE 180

Query: 756 VVGRVEEIWEEYRK 769
           +    E +  E  K
Sbjct: 181 LAEH-ERLMAEAEK 193


>gi|170717553|ref|YP_001784641.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
 gi|189083611|sp|B0UU42|SYT_HAES2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|168825682|gb|ACA31053.1| threonyl-tRNA synthetase [Haemophilus somnus 2336]
          Length = 642

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+   + +T  ++ ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDIDLDRSLTQEDIDTLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSS 701
            N  V+ + ++ ++A  +  +     K       ++ + +    H      +C G HV +
Sbjct: 130 TNYDVIKKRVSWQEARDTFESRAEPYKIAILDENIAKDDQPALYHHEEYIDMCRGPHVPN 189

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
                   ++    +     R                ++ L+ +       +  +   + 
Sbjct: 190 MRFCHHFKLMK---VAGAYWR------------GNSDNKMLQRIYGTAWADKKQLADYLH 234

Query: 762 EIWEEYRKLQLIHAKR 777
            + E  ++      K 
Sbjct: 235 RLEEAAKRDHRKIGKA 250


>gi|303325499|ref|ZP_07355942.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302863415|gb|EFL86346.1| threonine--tRNA ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 648

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 23/176 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +  +     G  I  +G  +D    +P +S +  +IE  +  I A
Sbjct: 75  IRHSTAHVMAAAVKRLFPTARVTIGPSID-NGFYYDFDVERPFSSEDFPAIEAEMQKIAA 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
              P     +++ DA+A   A  +G  Y   + +  +E +   +++      LC G HV 
Sbjct: 134 AREPFSREALSKADAVARFKA--MGETYKVEL-IEGIEADTVSLYTCGDFTDLCRGPHVP 190

Query: 701 STGEIMLLYIVSESSIRAGIRR------------IEAITGQRARSHLMGQDEKLKS 744
            TG      ++S   +     R              A   ++A +  + Q E+ K 
Sbjct: 191 HTGFAKASKLMS---VAGAYWRGDEKNPMLSRIYGTAFADEKALAAYLKQLEEAKR 243


>gi|47188969|emb|CAF93329.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 303

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863
           S+ L   +  L+ +      ML  +  E  K + L  V ++   R   A +  +    +L
Sbjct: 206 SQALNESLKLLKAQSPQTAAMLFTVDPEAGKVTCLCQVPQETASRGLKASEWVQDLCPLL 265

Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
             G GGG+   AQ+ G N ++  +A+     F +
Sbjct: 266 -DGKGGGKDLSAQATGKNTHRLQEALQAARQFAR 298


>gi|161760548|ref|NP_907033.2| threonyl-tRNA synthetase [Wolinella succinogenes DSM 1740]
          Length = 602

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 19/175 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             I HS  HLL  A+ ++        G  +  +G  +D      I   +L  IE  + +I
Sbjct: 38  HIIRHSCAHLLAQAIKSLYPEAQFFVGPVVQ-EGFYYDFRVESKIGEEDLAIIEKKMKEI 96

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
                 +    ++RE+AIA  A   L      +  +  +   D  ++       LC G H
Sbjct: 97  AKNGSDIERYTLSREEAIAKFAKDDLK-----QAVISRIPEGDLSIYRQGEFEDLCRGPH 151

Query: 699 VSSTGEIMLLYIVSESS-------IRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           + ST  +    +   +            + RI   A   + + +  + Q E+ K 
Sbjct: 152 LPSTKLLHAFKLTKLAGAYLGGDEKSEMLTRIYGIAFADKESLNAYLHQMEEAKK 206


>gi|113460987|ref|YP_719054.1| threonyl-tRNA synthetase [Haemophilus somnus 129PT]
 gi|123031343|sp|Q0I3M2|SYT_HAES1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112823030|gb|ABI25119.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Haemophilus
           somnus 129PT]
          Length = 642

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+   + +T  ++ ++E  + ++  
Sbjct: 71  IRHSTAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDIDLDRSLTQEDIDTLEKRMLELAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA---LCGGTHVSS 701
            N  V+ + ++ ++A  +  +     K       ++ + +    H      +C G HV +
Sbjct: 130 TNYDVIKKRVSWQEARDTFESRAEPYKIAILDENIAKDDQPALYHHEEYIDMCRGPHVPN 189

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
                   ++    +     R                ++ L+ +       +  +   + 
Sbjct: 190 MRFCHHFKLMK---VAGAYWR------------GNSDNKMLQRIYGTAWADKKQLADYLH 234

Query: 762 EIWEEYRKLQLIHAKR 777
            + E  ++      K 
Sbjct: 235 RLEEAAKRDHRKIGKA 250


>gi|148244740|ref|YP_001219434.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
 gi|166225515|sp|A5CWF9|SYT_VESOH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146326567|dbj|BAF61710.1| threonyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA]
          Length = 636

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  A   +        G  I  +G  +D  +       +L  IE N++ ++ 
Sbjct: 69  IRHSTAHLLAQATQMLYPDAQVTIGPVID-NGFYYDFAYKNGFLEGDLIKIEKNMHKLVK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           QNL +    M+R++ +        G  Y  ++       +   ++       LC G HV 
Sbjct: 128 QNLKIEKFEMSRDETLQFFKDK--GEYYKVKIIESISTDQILSLYKQGDFIDLCRGPHVP 185

Query: 701 STGEIMLLYIVSESS 715
           ST ++    ++  + 
Sbjct: 186 STAKLKNFKLMKLAG 200


>gi|311894878|dbj|BAJ27286.1| putative threonyl-tRNA synthetase [Kitasatospora setae KM-6054]
          Length = 659

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 24/175 (13%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
              +   +         + HS  H++  A+  +        G  +  DG  +D    +P 
Sbjct: 54  GDEVEPVVISSPDGLDILRHSTAHVMAQAVQQVFPEAKLGIGPPV-RDGFYYDFDVERPF 112

Query: 628 TSAELKSIEDNVNDIIAQNLP----VVTRIMNRED-AIASGAAALLGTKYN----DRVRV 678
              +LK IE  + +II +       VVT    RE+ A       L+G K +         
Sbjct: 113 QPDDLKVIEKKMQEIIKRGQKFSRRVVTDEAAREELAKEPYKLELIGLKGSAATAGEGAD 172

Query: 679 VSVEYEDGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           V V   +  ++ +            LC G H+ ST  I    ++      A   R
Sbjct: 173 VEVGAGELTIYDNLDPKTGELCWGDLCRGPHLPSTRHIPAFKLM---RSAAAYWR 224


>gi|257784431|ref|YP_003179648.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
 gi|257472938|gb|ACV51057.1| threonyl-tRNA synthetase [Atopobium parvulum DSM 20469]
          Length = 588

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 17/173 (9%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKP 626
               V  I+        I H A HLL  AL  +   H        T +G  +DV      
Sbjct: 6   NDGHVGEINDAAEELEVIRHDAAHLLAQALKRLYP-HAQFAYGPATENGFYYDVDLGDTK 64

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSV 681
           +   +  +IE  +  I+ +NL + T  + R++A+A       G  Y      D      +
Sbjct: 65  VNEDDFPAIEAEMKKIVKENLKIETFELPRDEAVAY--MKERGESYKVEHIGDLAPDAHI 122

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            +   G +   +C G H+  T  +    + S S            + RI  + 
Sbjct: 123 TFYKQGEYVD-MCVGPHMLYTKGVKAFKLTSISGAYWKADKNNKMLTRIYGVA 174


>gi|269126329|ref|YP_003299699.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
 gi|268311287|gb|ACY97661.1| threonyl-tRNA synthetase [Thermomonospora curvata DSM 43183]
          Length = 684

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +R    +  + ID ++ R +   HS  H++  A+  +        G  +  +G  +D  
Sbjct: 78  EVRDGDEVEPVAIDTEDGRAILR-HSTAHVMAQAVQELFPEAKLGIGPPV-ENGFYYDFD 135

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYND 674
            ++P T  +LK IE  + +II Q      R ++ E A A  A          L G    D
Sbjct: 136 VARPFTPEDLKRIEKRMREIIKQGQRFSRRPVSDEQARAELADEPYKLELIDLKGGASAD 195

Query: 675 RVRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               V V      ++              LC G H+ +T  I    ++          R
Sbjct: 196 DGSSVEVGAGQLTIYDNLDAKTGEVCWKDLCRGPHLPTTRHIPAFKLM---RSGGAYWR 251


>gi|257067150|ref|YP_003153406.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
 gi|256799030|gb|ACV29685.1| threonyl-tRNA synthetase [Anaerococcus prevotii DSM 20548]
          Length = 640

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 31/196 (15%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++H++  A+  +        G  I  DG  +D+      T  +L+ IE  + +I  ++
Sbjct: 73  HTSSHVMAAAIKEMYPETKFAIGPAID-DGFYYDMDLEHRFTPEDLEKIEKKMLEIAKRD 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-----SALCGGTHVSS 701
           L +    ++R +A+        G  Y   +     E E   ++      + LC G H+  
Sbjct: 132 LKLERVEISRAEALEKF--KEEGQDYKVELIEDLPEDEKITLYKMGDAFTDLCRGPHL-- 187

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
                 +  V   +I     R     G   R  L          A  L            
Sbjct: 188 -LSTKAIKAVKLKTIAGAYWR-----GDSDRQMLQRIYGISFEKAKQL------------ 229

Query: 762 EIWEEYRKLQLIHAKR 777
              EEY +LQ    KR
Sbjct: 230 ---EEYEELQKEIEKR 242


>gi|266623074|ref|ZP_06116009.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
 gi|288865169|gb|EFC97467.1| threonine--tRNA ligase [Clostridium hathewayi DSM 13479]
          Length = 691

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 89/271 (32%), Gaps = 24/271 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H+L  A+  +        G  I  +G  +D       +  +L  IE  +  II
Sbjct: 111 AYRHTTSHVLAQAVKHLYPEAKLAIGPSI-ENGFYYDFETPS-FSREDLDKIEAEMKKII 168

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
                +    + R +A+        G  Y   +     E  +   +       LC G H+
Sbjct: 169 KAGEKLERFTLPRAEAVKF--MEEKGEPYKVELIRDLPEDAEISFYRQGDFTDLCAGPHL 226

Query: 700 SSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            ST  I    + S S          A + R+   T    +  L    E L ++    K  
Sbjct: 227 MSTKPIKAFKLTSSSGAYWRGSEKNAMLTRVYG-TSFAKKEELNEYLEYLANI----KNR 281

Query: 753 QGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808
             N +GR  E++       + L L+  K    +           +        + + +K+
Sbjct: 282 DHNKLGRELELFATVDVIGQGLPLLMPKGAKIIQTLQRWIEDEEEKRGYMRTKTPLMAKK 341

Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
              V+       + G+ +L    K+ +   L
Sbjct: 342 DLYVISDHWDHYKEGMFVLGDEEKDDEVFAL 372


>gi|317491930|ref|ZP_07950364.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920051|gb|EFV41376.1| threonyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 645

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 18/197 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ +           I HS  HLL HA+  +  +     G  I  +G  +DV  
Sbjct: 50  PITVDANVSIITAKDQEGLEIIRHSCAHLLGHAIKQLWPNTKMAIGPVID-NGFYYDVDL 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
              +T  +L+ ++  ++++  ++  V+ + ++ ++A  +  A     K       +S   
Sbjct: 109 DHTLTQEDLELLDKRMHELADKDYDVIKKKVSWQEARDTFEARQEPYKVAILDENIS-HD 167

Query: 684 EDGGVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQR 730
           +  G++       +C G HV +        +    S  A  R         RI   T   
Sbjct: 168 DQPGLYHHEEYVDMCRGPHVPNMRFCHHFKLQK--SSGAYWRGDSNNTVLQRIYG-TAWA 224

Query: 731 ARSHLMGQDEKLKSLAS 747
            +  L    ++L+  A 
Sbjct: 225 DKKQLNAYLQRLEEAAK 241


>gi|222480176|ref|YP_002566413.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453078|gb|ACM57343.1| threonyl-tRNA synthetase [Halorubrum lacusprofundi ATCC 49239]
          Length = 649

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 87/260 (33%), Gaps = 26/260 (10%)

Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583
           AG  + D    IG G+       +    G      + +   +     + +  D  +    
Sbjct: 24  AGATVEDVAFEIGPGL------GRDTVAGKIDGELVEKYATVHDGARIEIVTDQSDEYLT 77

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HSA H+   AL  +        G         +       +   +L +IE+ +++II
Sbjct: 78  VLRHSAAHVFAQALQRLHPEATLTIGPPTDEG--FYYDVTDVDLDEDDLDAIEEEMDEII 135

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           A +  +   + +RE+A    A      +  D                  LC G HV STG
Sbjct: 136 AADYDIEREVRSREEAKEIYADNEYKLQILDEEADDEEVTFYVQDDWQDLCQGPHVESTG 195

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           EI    ++  S                A       ++ L  +      S+ ++   +E +
Sbjct: 196 EIGATTLLEVS---------------AAYWRGDEDNDTLTRVYGTAFASESDLKEHLE-L 239

Query: 764 WEEYRKLQLIHAKRKLQLNV 783
            EE   L+  H K   ++N+
Sbjct: 240 REE--ALERDHRKIGQEMNL 257


>gi|302669952|ref|YP_003829912.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
 gi|302394425|gb|ADL33330.1| threonyl-tRNA synthetase ThrS [Butyrivibrio proteoclasticus B316]
          Length = 602

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 79/211 (37%), Gaps = 20/211 (9%)

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           R    + ++ D  N  + +  H++ H+L  A+  +        G  I  +G  +D     
Sbjct: 22  RDGQVMEVSFD-DNDGKKAFWHTSAHVLAQAVKRLYPQAKCAIGPAI-ENGFYYDFDFGF 79

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
                 L +IED +  II ++L +    M+++DAI+    A     +   +     E E 
Sbjct: 80  SFNEDNLGAIEDEMRRIIKESLSLQVYEMSKKDAISYMEKA--DEPFKLEMIRELPEGEV 137

Query: 686 GGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSH 734
              +        C G H+ +   I  + ++S +            + RI  I+  +A   
Sbjct: 138 ISFYKQGDYAEFCAGPHIVNVSHIKAVKLLSVAGAYWRGDEHNKMLTRIYGISFPKA--- 194

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
               D+ L  L    K     V+G+  E++ 
Sbjct: 195 -SLMDDHLHQLEEA-KARDHRVLGKELELFA 223


>gi|71282219|ref|YP_269610.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
 gi|123747383|sp|Q480A9|SYT_COLP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71147959|gb|AAZ28432.1| threonyl-tRNA synthetase [Colwellia psychrerythraea 34H]
          Length = 636

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +D+   + I+  +L  +E  + ++  
Sbjct: 71  IRHSCAHLLGHAIKQLYPNVKMAIGPTI-ENGFYYDIDLDESISEDDLVKLEKRMTELAR 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHV 699
               VV +  + +DA  +      G  Y   +   ++E  D            +C G HV
Sbjct: 130 TGYEVVKKTGSWQDAYDAFTER--GETYKLAILDENIEKTDTPALYHHQEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            S        ++    +     R
Sbjct: 188 PSMRHCHHFKLMK---VAGAYWR 207


>gi|315230756|ref|YP_004071192.1| alanyl-tRNA synthetase domain-containing protein [Thermococcus
           barophilus MP]
 gi|315183784|gb|ADT83969.1| alanyl-tRNA synthetase domain protein [Thermococcus barophilus MP]
          Length = 151

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGS-CITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H++  A+  +LG       S  +  +  R  V   +  T  E+  IE   N+ +
Sbjct: 7   RTHTALHVVKGAVVKVLGEKAKWTASVYVNGNHGRLTVKFDRKPTQEEIAKIERMANEKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+P+    + RE+A       +    +     + +++       +   C   H  +T 
Sbjct: 67  KENVPIHVYELPREEAEKRFGEDMYDL-FPIPPEIKTLKVVVIENWNVNACNKQHTKTTR 125

Query: 704 EIMLLYIVS 712
           E+  + I  
Sbjct: 126 EVGKIKIKK 134


>gi|189499158|ref|YP_001958628.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
 gi|238692225|sp|B3EKG9|SYT_CHLPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189494599|gb|ACE03147.1| threonyl-tRNA synthetase [Chlorobium phaeobacteroides BS1]
          Length = 659

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 29/213 (13%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               HSA+H++  A+  +        G  +   G  +D+         +L+ IE  + DI
Sbjct: 80  HIFWHSASHIMAQAIEELFPGTKFGAGPAV-EQGFYYDIASEHRFNEEDLQKIEQQMLDI 138

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---------AL 693
             +++ +    M RE A      A       D  +V  ++       S           L
Sbjct: 139 SKRSIDIRREEMPREKA-----IAFFSESRKDPYKVEILQDTLKEADSVSIYHQGAFADL 193

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C G H+ +T ++  + +    +I A   R     G  +R  +          A  LK   
Sbjct: 194 CSGPHLPNTSKLKAVKLT---NISASFWR-----GDSSRESMQRIYGIAFPSAKLLK--- 242

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
              + R+EE   + R  + + A+ +L +  +D+
Sbjct: 243 -QHLARLEE--AKKRDHRKLGAELELFMLSQDV 272


>gi|57237210|ref|YP_178222.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|73919779|sp|Q5HWW3|SYT_CAMJR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|57166014|gb|AAW34793.1| threonyl-tRNA synthetase [Campylobacter jejuni RM1221]
 gi|315057643|gb|ADT71972.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3]
          Length = 602

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 18/197 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +               + G  A      + E L  +       + ++   +  I 
Sbjct: 158 LRFFKLTR-------------VAG--AYLDGDEKREMLTRIYGTAFADKESLKEYLT-II 201

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE +K        +L+L
Sbjct: 202 EEAKKRDHRKLGTELKL 218


>gi|259418221|ref|ZP_05742139.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
 gi|259345616|gb|EEW57460.1| threonyl-tRNA synthetase [Silicibacter sp. TrichCH4B]
          Length = 648

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGTIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +  PV T + +R  A+           Y   +       E            LC G H+ 
Sbjct: 133 KREPVTTEVWDRAKAVQYYTDN--NEPYKVELIDAIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
            TG++      ++S   I     R
Sbjct: 191 HTGQVPGDAFKLMS---IAGAYWR 211


>gi|171910788|ref|ZP_02926258.1| threonyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 652

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 34/222 (15%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H++  A+  I        G  +   G  +D      IT  + + IE  +  I 
Sbjct: 19  RLRHSCAHIMATAILRIWPDAQFAYGPPV-ESGFYYDFDLKHRITPDDFEKIEAEMKKIA 77

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG---TKYND------RVRVVSVEYEDGGVHSS--- 691
            +N     R+++RE+AIA   +  LG    +  +       +     E E+   + +   
Sbjct: 78  KENQKFEKRVLSREEAIALAESGRLGGLSERPGNASQFKLDLIAKIPEGEEISCYQNGEF 137

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK--LKSLASF 748
             LC G HV+ T +   + ++S                  A ++ MG + K  L+ L   
Sbjct: 138 LDLCAGPHVNYTSKCKNVKLMSI-----------------ASAYYMGDESKPQLQRLYGT 180

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
              S   +   +E++ EE +K       R+LQL   D    +
Sbjct: 181 AFPSSEELAKHLEQL-EEAKKRDHRKLGRELQLFAIDEKVGQ 221


>gi|57168347|ref|ZP_00367481.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
 gi|57020155|gb|EAL56829.1| threonyl-tRNA synthetase [Campylobacter coli RM2228]
          Length = 602

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 18/197 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D   +  I   +L  IE  + +++ 
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVNSKIGEEDLAKIEKKMKELVE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               +    + + +AIA      L  +   R+    V     G     LC G HV +T  
Sbjct: 99  AKQEIEKYEITKNEAIAKFKDDDLKQEVLLRIPDGKVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +               + G  A      + E L  +       + ++   +  I 
Sbjct: 158 LRNFSLTR-------------VAG--AYLGGDEKREMLTRIYGTAFADKESLKEHL-RII 201

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE +K        +L+L
Sbjct: 202 EEAKKRDHRKLGTELKL 218


>gi|84687895|ref|ZP_01015762.1| threonyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664089|gb|EAQ10586.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654]
          Length = 649

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 13/145 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H++  A+  +        G  I   G  +D    +P T  +L +IE  + +II 
Sbjct: 74  IRHDAAHIMARAVQALWPDTKVTIGPVI-EHGWYYDFDRDEPFTPEDLGAIEAKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-----GGVHSSALCGGTHV 699
               V T + +R DAIA       G  Y   +     +               LC G H+
Sbjct: 133 ARDEVRTEVWSRADAIAHYEKT--GEPYKVELVNAIPDDGQPIRMYWHGDWQDLCRGPHL 190

Query: 700 SSTGEI--MLLYIVSESSIRAGIRR 722
            +TG++      ++    +     R
Sbjct: 191 QNTGQVPADAFKLMK---VAGAYWR 212


>gi|217077729|ref|YP_002335447.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
 gi|217037584|gb|ACJ76106.1| threonyl-tRNA synthetase [Thermosipho africanus TCF52B]
          Length = 636

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 9/172 (5%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
             GI           +  +  + +             H+  H++  A+  I G    + G
Sbjct: 35  VGGIVNGMLWDLERPIDFDCEIKIITKKDKEAPEFFRHTMAHIMAQAVMRIYGPENVRLG 94

Query: 610 SCIT-PDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
              T  +G  +D    +  I   +L+ IE  +  II ++L +    +N+++AI       
Sbjct: 95  IGPTIENGFYYDFEILNGVIKEEDLEKIEKEMKKIIKEDLKIERFELNKDEAIKM--MDE 152

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
            G  Y   + +  ++ E    +       LC G H+  TG I    ++S S 
Sbjct: 153 KGQIYKVEL-IKEIQDEKVSFYKQGEFVDLCRGPHLPRTGMIKHFKLLSVSG 203


>gi|149200873|ref|ZP_01877848.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
 gi|149145206|gb|EDM33232.1| threonyl-tRNA synthetase [Roseovarius sp. TM1035]
          Length = 648

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   + P T  +L  IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDVKVTIGPVI-ANGWYYDFDRTAPFTPEDLGLIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
              PV T I  R+ AI        G  Y   +       E            LC G H+ 
Sbjct: 133 LRDPVRTEIWERDRAIQHYRDT--GEPYKVELIEAIPGSEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
           +TG++      ++S   +     R
Sbjct: 191 NTGQVPADAFKLMS---VAGAYWR 211


>gi|87309081|ref|ZP_01091218.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
 gi|87288072|gb|EAQ79969.1| threonyl-tRNA synthetase [Blastopirellula marina DSM 3645]
          Length = 668

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 25/233 (10%)

Query: 564 ILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            L TE S+ L +  +        + HS  H++  A+  +        G  I   G  +D 
Sbjct: 50  PLPTEGSVNLRLLTNKDKEALGVMRHSCAHIMARAVMRLFDGVQLAFGPTI-EGGFYYDF 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVS 680
                +T+ +  +IE  +  II +N P      +RE A+A      +   Y  + +    
Sbjct: 109 DLEHKLTAEDFPAIEAEMKKIIKENEPFERIEESREGALA--VVKDIDQHYKIEHIETGL 166

Query: 681 VEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
             +E    +       LC G HV     I    ++S             + G  A     
Sbjct: 167 SGHETLSFYRQGEFIDLCRGPHVPRPKSIGAYKLLS-------------VAG--AYWKGS 211

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
             +++L+ + +    ++ ++   +E++ E  R+      K+     +  L   
Sbjct: 212 SDNKQLQRVYATAFFNKDDLAAHLEKLEEAKRRDHRTLGKQLELFAINPLVGQ 264


>gi|172040605|ref|YP_001800319.1| threonyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109]
 gi|171851909|emb|CAQ04885.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 662

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 29/209 (13%)

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             +  +          +  I HS  H+L  A+  +        G  I   G  +D   ++
Sbjct: 32  EVDTEVTAIASDTEEGRGVIRHSTAHVLAQAVQRVFPGTKLGIGPAID-GGFYYDFDVAE 90

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           P T  +LK IE  +  II        +   + ++A    AA     +  +    V+ + E
Sbjct: 91  PFTPEDLKKIEREMKKIIKSGQRFERKAYSSNDEARTEYAAEPYKLELIEDKGNVAPDSE 150

Query: 685 D-------------------GGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RA 718
           +                   G V    LC G HV +T  I    I   S+         A
Sbjct: 151 EAMEVGAGELTAYSNVNPRTGEVEWYDLCRGPHVPTTRYIPAFAITRSSAAYWRGDQDNA 210

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G++RI   T   ++  L      L+    
Sbjct: 211 GLQRIYG-TAWESKEKLAEYQHMLEEAEK 238


>gi|261416474|ref|YP_003250157.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372930|gb|ACX75675.1| threonyl-tRNA synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 695

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 17/143 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +H+L  A+  +        G  I   G  +D+    PI  ++ + IE  + +II 
Sbjct: 125 LRHSCSHVLAEAICDLFPGTKLAYGPAID-KGFYYDLMTPTPIQQSDFERIEKRMKEIIK 183

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE------------DGGVHSSA 692
           ++ P V   ++ ED    G     G KY       ++  E            + G +   
Sbjct: 184 EDRPFVRCEVSAED----GLKRTEGDKYKTDNAQRALAREGSDGTLSFYVTGEPGKNFED 239

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G HV STG++    ++S S 
Sbjct: 240 LCAGPHVPSTGKLKNFKVLSMSG 262


>gi|298291991|ref|YP_003693930.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
 gi|296928502|gb|ADH89311.1| threonyl-tRNA synthetase [Starkeya novella DSM 506]
          Length = 666

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 11/176 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H A H+L  A+  +        G  I  +G  +D   ++P +  +  +IE  + +I+A
Sbjct: 86  IRHDAAHVLAEAVQELWPGTQVTIGPVI-ENGFYYDFFRNEPFSLEDFPAIEKKMREIVA 144

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++      + +RE+       A  G  +   +       +   ++       LC G H+ 
Sbjct: 145 RDASFTKEVWDREETKR--VFAEKGEAFKVELVDAIPADQQIKIYKQGNWFDLCRGPHMP 202

Query: 701 STGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           S G++     ++    +     R +A      R +     ++ +  A  L++ +  
Sbjct: 203 SVGKVGDAFKLMK---VAGAYWRGDAKNPMLTRIYGTAWRDREELDAYILQLEEAE 255


>gi|239933644|ref|ZP_04690597.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 114

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
             ++ DVQ+   G+ VH   V    L    S+      + R       S TH+LH AL  
Sbjct: 2   EAEVLDVQRPLPGLIVHQVRVLSDELAAGDSVHAAA-PEWRLGARQARSGTHVLHAALRQ 60

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +LG    Q+GS   P  LR D      +  
Sbjct: 61  VLGPGAPQSGSYNRPGYLRLDFPWRGSLPP 90


>gi|323487567|ref|ZP_08092859.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
 gi|323399124|gb|EGA91530.1| hypothetical protein HMPREF9474_04610 [Clostridium symbiosum
           WAL-14163]
          Length = 653

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 17/176 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+ +H+L  A+  +        G  I  +G  +D   ++P T  +L ++E  +  II
Sbjct: 69  AMRHTCSHVLAEAVKRMRPQAKLTIGPSI-ENGFYYDFD-TEPFTREDLDNLEKEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-----ALCGGTH 698
            +   +    + RE AI           Y   +     E E+   +        LC G H
Sbjct: 127 KEGQKLEKFTLTREAAIR--LMEERDEPYKVELIQELPENEEISFYRQGGDFTDLCAGPH 184

Query: 699 VSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           + ST  I    ++S S       S +A ++RI   T   ++  L    E L+ +  
Sbjct: 185 LMSTKPIKAFKLISSSMAYWRGDSSKAQLQRIYG-TAFASKEELNAYLEHLEDIKK 239


>gi|117928565|ref|YP_873116.1| threonyl-tRNA synthetase [Acidothermus cellulolyticus 11B]
 gi|117649028|gb|ABK53130.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Acidothermus
           cellulolyticus 11B]
          Length = 685

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 77/243 (31%), Gaps = 42/243 (17%)

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSA 589
                 D   + +     +  G+    A V    L     +  + ID  + R +   HS 
Sbjct: 52  AATLFDDRAVIAV-----RINGVLRDLATV----LADGDEVEPVRIDTPDGRSILR-HST 101

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            H+L  A+  +        G  I  +G  +D   ++P T  +L+ IE  + DII +    
Sbjct: 102 AHVLAQAVQALFPGTRLGIGPPI-ENGFYYDFDTAQPFTPDDLRRIEQRMRDIIREGQIF 160

Query: 650 VTRIMNREDAIASGAAALLG------------------TKYNDRVRVVSVEYEDGGVHSS 691
             R++  E A    A                           + + +      DG +   
Sbjct: 161 RRRVVTDEQARTELAGEPYKLELISVKSAAADTEGAGAEIGGEELTIYDNLRPDGSLAWK 220

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMGQDEKL 742
            LC G H+ ST  I    +   +   A  R         RI   T   +R  L    + L
Sbjct: 221 DLCRGPHLPSTRHIPAFTLTRTA--AAYWRGRETNPQLQRIYG-TAWESRDALQKYLDLL 277

Query: 743 KSL 745
           +  
Sbjct: 278 REA 280


>gi|228958638|ref|ZP_04120356.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228801059|gb|EEM47958.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 640

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  +  S +
Sbjct: 37  KKAVAGKVNDGLYDLRRKIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLY-SDI 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  II +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +  +    +       E   ++       LC G H+  TG +    +   S 
Sbjct: 153 QEMNDRLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPFTGYLKAFQLTHVSG 206


>gi|148508028|gb|ABQ75826.1| threonine--tRNA ligase [uncultured haloarchaeon]
          Length = 643

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 96/262 (36%), Gaps = 41/262 (15%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           EIV     G ++ V           G  + D    IG G+       +    G      +
Sbjct: 3   EIVVTLPDGAELSV---------SKGATVEDVAYEIGPGL------GRDTIAGKVDGELV 47

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            ++  +     + +  D  +  +  + HSA H+   AL  +    +   G   T +G  +
Sbjct: 48  EKQTPVYDGARIEIVTDQSDEYRRVLRHSAAHVFAQALKRLYPEALLTIGPP-TDEGFHY 106

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTKYND 674
           D+  +  +  + +  IE  + DII  + P+      RE+A    A       +L T+  D
Sbjct: 107 DIA-NVDLDESAVDDIEAEMKDIIDADYPIERMTKTREEAFEIYADNQYKRDILQTEAAD 165

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-------IEAIT 727
              V    Y+        LC G HV STG+I  + ++S   I +   R       +  ++
Sbjct: 166 EDEVSF--YQQDEFID--LCEGPHVESTGDIGAVTLLS---ISSAYWRGNEDNDMLVRVS 218

Query: 728 G-----QRARSHLMGQDEKLKS 744
           G     + A    + + EK K 
Sbjct: 219 GTAFETEGALEAYLERREKAKE 240


>gi|313159213|gb|EFR58586.1| threonine--tRNA ligase [Alistipes sp. HGB5]
          Length = 650

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 17/147 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+++HLL  AL  +        G  I  +G  +DV    PIT A+L  IE  + ++
Sbjct: 69  HAFWHTSSHLLAEALEALYPGIKFGIGPAI-ENGFYYDVDSPTPITEADLPKIEQKMQEL 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCG 695
                 +V R + + +A+ +        K  D+ +V  +     G  S       + LC 
Sbjct: 128 SRNKEQLVRREVPKAEALKT-----FTEK-GDQYKVELISDLQDGTISFYTNGAFTDLCR 181

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G H+ +      +  +  +S+     R
Sbjct: 182 GPHIPN---TGYIKALKLTSVAGAYWR 205


>gi|83942907|ref|ZP_00955367.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
 gi|83845915|gb|EAP83792.1| threonyl-tRNA synthetase [Sulfitobacter sp. EE-36]
          Length = 649

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 19/175 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  +        G  I  DG  +D    +  T  +L  IE  + +II +
Sbjct: 75  RHDLAHIMARAVQELWPDTKVTIGPVI-KDGWYYDFDRKESFTPEDLGLIEKKMKEIINK 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
             PV T + +RE AI        G  Y   +       E            LC G H+  
Sbjct: 134 RDPVRTEVWDRERAIKHYEDN--GEPYKVELINSIPGDEPLRMYWHGDWQDLCRGPHLQH 191

Query: 702 TGEI--MLLYIVSESSI-------RAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
           TG++      ++S +         RA ++RI  +  TG+     HL   +E  K 
Sbjct: 192 TGQVPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLNMLEEAAKR 246


>gi|308182296|ref|YP_003926423.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
 gi|308064481|gb|ADO06373.1| threonyl-tRNA synthetase [Helicobacter pylori PeCan4]
          Length = 612

 Score = 68.2 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHTVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|83954081|ref|ZP_00962801.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
 gi|83841118|gb|EAP80288.1| threonyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1]
          Length = 649

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 65/175 (37%), Gaps = 19/175 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  +        G  I  DG  +D    +  T  +L  IE  + +II +
Sbjct: 75  RHDLAHIMARAVQELWPDTKVTIGPVI-KDGWYYDFDRKESFTPEDLGLIEKKMKEIINK 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
             PV T + +RE AI        G  Y   +       E            LC G H+  
Sbjct: 134 RDPVRTEVWDRERAIKHYEDN--GEPYKVELINSIPGDEPLRMYWHGDWQDLCRGPHLQH 191

Query: 702 TGEI--MLLYIVSESSI-------RAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
           TG++      ++S +         RA ++RI  +  TG+     HL   +E  K 
Sbjct: 192 TGQVPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLNMLEEAAKR 246


>gi|302335586|ref|YP_003800793.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
 gi|301319426|gb|ADK67913.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Olsenella uli
           DSM 7084]
          Length = 588

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 11/145 (7%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSI 635
           +N     I HSA H++  A+  +        G   T +G  +D+   +   I+  +L +I
Sbjct: 15  ENEELHVIRHSAAHIMAQAIKRLYPEADFAFGPA-TDNGFYYDIDLPEGTKISDDDLPAI 73

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHS 690
           E  +  I  +NL   T  + REDAI        G KY      D      + +   G + 
Sbjct: 74  EAEMRKITKENLRFETYELPREDAIRH--MEERGEKYKVEHIGDLPDDARITFYRQGEYV 131

Query: 691 SALCGGTHVSSTGEIMLLYIVSESS 715
             +C G H++ T  +    +   S 
Sbjct: 132 D-MCVGPHLTYTKALKAFKLTGVSG 155


>gi|222823074|ref|YP_002574647.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
 gi|254783514|sp|B9KEB1|SYT_CAMLR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222538295|gb|ACM63396.1| threonyl-tRNA synthetase [Campylobacter lari RM2100]
          Length = 603

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 18/185 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I+  +L  IE  + ++  
Sbjct: 41  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVDSKISEEDLSKIEKKMKELAE 99

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    +++ +     A   L  +   R+    V     G     LC G HV +T  
Sbjct: 100 AKLDITKYELSKAEVKEKFANDDLKQEVLLRIPDGKVSIYKQGEF-EDLCRGPHVPNTKY 158

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +               + G  A      + E L  +       + ++   + +I 
Sbjct: 159 LRFFKLTR-------------VAG--AYLGGDEKREMLTRIYGTAFADKESLNEYL-KII 202

Query: 765 EEYRK 769
           EE +K
Sbjct: 203 EEAKK 207


>gi|256826891|ref|YP_003150850.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
 gi|256583034|gb|ACU94168.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Cryptobacterium
           curtum DSM 15641]
          Length = 586

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 573 LTIDY--QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITS 629
             ID   ++     + HSA H+L  A+  +        G     +G  +D+      I+ 
Sbjct: 8   GHIDECPEDEELHVLRHSAAHILAQAVKRLYPEARFGYGPAND-NGFYYDIDLGDAKISE 66

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            +L +IE  +  I+ +NL      + RE+A+        G  Y         E      +
Sbjct: 67  DDLPTIEAEIKKIVKENLKFTVFELPREEAVKF--MTERGESYKAEHIGDLPEDTRLTFY 124

Query: 690 SS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQ 738
                  +C G H++ T  +    + + S            + RI  +   R +  L+  
Sbjct: 125 QQGEYVDMCVGPHITYTKALKAFKLTNVSGAYWKGDAANKMLTRIGGVA-FRTKEELVHH 183

Query: 739 DEKLKSLAS 747
           +E L     
Sbjct: 184 EELLAEAEK 192


>gi|126735278|ref|ZP_01751024.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
 gi|126715833|gb|EBA12698.1| threonyl-tRNA synthetase [Roseobacter sp. CCS2]
          Length = 648

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I  DG  +D    +P T  +L +IE  + +II +
Sbjct: 75  RHDLAHIMARAVQEIWPDTQVTIGPVI-KDGWYYDFDRKEPFTPEDLSTIEKKMKEIINK 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
              V T I  R  AI        G  Y   +       E            LC G H+  
Sbjct: 134 RDEVRTEIWERNVAIQYYKDR--GEPYKVELIESIPGEEPLRMYWHGDWQDLCRGPHLQH 191

Query: 702 TGEIML--LYIVSESSIRAGIRR 722
           TG++      ++S   I     R
Sbjct: 192 TGQVPADGFKLMS---IAGAYWR 211


>gi|302855151|ref|XP_002959075.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
 gi|300255572|gb|EFJ39869.1| hypothetical protein VOLCADRAFT_70347 [Volvox carteri f.
           nagariensis]
          Length = 563

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 22/194 (11%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDN 638
           + L I HS  H++  A+  +        G      G  +D       PIT  +LK I+  
Sbjct: 11  QLLRIRHSCAHIMAMAVQRLYKGVQVTIGPWTDR-GFFYDFHWPADSPITEKDLKKIKKE 69

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCG 695
           +  II  +LP V   +  E+A A   AA  G  Y   +    ++             LC 
Sbjct: 70  MAKIIRADLPFVREEVTPEEAEARIRAA--GEPYKLEILQSILQQPLTEPFITPWWDLCA 127

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV+ TG+I     V   SI     R               Q+E L  +      +   
Sbjct: 128 GPHVNRTGDINPDA-VELESIAGAYWR------------GNEQNEMLTRIYGTAWETPEQ 174

Query: 756 VVGRVEEIWEEYRK 769
           +    E++ EE  K
Sbjct: 175 L-KAYEQLKEEAAK 187


>gi|92117217|ref|YP_576946.1| threonyl-tRNA synthetase [Nitrobacter hamburgensis X14]
 gi|91800111|gb|ABE62486.1| Ser-tRNA(Thr) hydrolase [Nitrobacter hamburgensis X14]
          Length = 681

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
           R    I H A H+L  A+ ++        G  I  +G  +D   ++P +  +  +IE  +
Sbjct: 91  RALELIRHDAAHVLAEAVQSLWPGTQVTIGPVI-ENGFYYDFFRNEPFSLEDFPAIEKKM 149

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCG 695
            +IIA++ P    + +RE           G  +   +       E   ++       LC 
Sbjct: 150 REIIARDKPFTKDVWDRE--KTKQVFRDKGEAFKVELVDAIPGDEPIKIYYQGDWFDLCR 207

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H++STG+I     ++    +     R
Sbjct: 208 GPHMTSTGKIGNAFKLMK---VAGAYWR 232


>gi|317503263|ref|ZP_07961318.1| alpha-amylase [Prevotella salivae DSM 15606]
 gi|315665620|gb|EFV05232.1| alpha-amylase [Prevotella salivae DSM 15606]
          Length = 712

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 15/156 (9%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  N+ +    H+A HLL+  +  +     S N            + + KP    E   I
Sbjct: 566 NEHNKEEFPPAHTAEHLLNQVMIQMFHCDRSYNAHIERKKSKMSFILNHKPTRQEE---I 622

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +N++I ++LP+   +++R           L    ++ +R+V +     G      C 
Sbjct: 623 ERRMNELIQEDLPITYELVDRAHIPDGVTLDRLPNDASEMLRLVHI-----GTFDICPCI 677

Query: 696 GTHVSSTGEIMLLYIVS----ESSIRAGIRRIEAIT 727
           G HV ST +I    ++     ES+      RI    
Sbjct: 678 GKHVRSTSQIGRFEMLGTNWDESNHS---FRIRFKV 710


>gi|313891921|ref|ZP_07825522.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|329121028|ref|ZP_08249659.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
 gi|313119564|gb|EFR42755.1| threonine--tRNA ligase [Dialister microaerophilus UPII 345-E]
 gi|327471190|gb|EGF16644.1| threonine--tRNA ligase [Dialister micraerophilus DSM 19965]
          Length = 634

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ H+A H++  A+  +        G  I+  G  +D+         +  +IE  ++ II
Sbjct: 70  ALRHTAAHVMAQAIQHLYPGTKFAIGPAIST-GFYYDIESEHVFKQEDFPAIEKEMSKII 128

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            QNL +  ++++R++A+          K    ND      +     G +   LC G HV 
Sbjct: 129 KQNLHLDKKVVSRKEALDFFKNKEQDYKILLINDMPEDTELSIYTQGDYDD-LCRGGHVD 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG+I    ++S   +     R
Sbjct: 188 NTGKIKAFKLLS---VAGAYWR 206


>gi|221134666|ref|ZP_03560969.1| threonyl-tRNA synthetase [Glaciecola sp. HTCC2999]
          Length = 637

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 23/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+ HA+  +        G  I  +G  +DV     +T  +L +IE  +  +  
Sbjct: 71  IRHSCAHLIGHAIKQLFPDVKMAIGPTID-NGFYYDVDLEHSLTQDDLDNIEKRMLQLAK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-----GGVHSSALCGGTHV 699
            +  VV  + + + A  +      G  Y   +   ++  +D            +C G HV
Sbjct: 130 TSYDVVKNVGSWQTARDTFEQR--GESYKLEILDENISQDDTPALYVHEEYIDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +        I+    +     R               +++ L+ +       +  +   
Sbjct: 188 PNMRFCQHFKIMK---VAGAYWR------------GNSENKMLQRIYGTAWADKKQLKAY 232

Query: 760 VEEIWEEYRKLQLIHAK 776
           +  + E  ++      K
Sbjct: 233 LNRLEEAEKRDHRKIGK 249


>gi|94971761|ref|YP_593809.1| threonyl-tRNA synthetase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553811|gb|ABF43735.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 659

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 10/154 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  +  L L  D          HS+ HLL  A+  +       +G   T +G  +D   
Sbjct: 63  PLEEDSELKLLTDRDPEALEVYRHSSAHLLAAAVLDLFPETKLGHGPS-TENGFFYDFYR 121

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS------GAAALLGTKYNDRVR 677
             P T  +L+ IE  + +++ +++P     + RE+++                ++     
Sbjct: 122 QTPFTPEDLEKIEKRMQELVKEDVPYAREFLPREESLERFKTEGDFMKCHFIEQFTKPDE 181

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
            +S+ Y+ G       C G H+ STG+I    ++
Sbjct: 182 KISI-YKTGKFLD--FCRGPHIPSTGKIKAFKLL 212


>gi|167044146|gb|ABZ08829.1| putative DHHA1 domain protein [uncultured marine crenarchaeote
           HF4000_APKG5C13]
          Length = 140

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 821 QSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
           +   ++  G+ ++  K   +I   +       A  +A++ ++VL GG GGG    AQ GG
Sbjct: 62  KDPWMVYCGVFEDGDKIRAIIYSGDQAAKDKKAGYIAKIVSEVL-GGAGGGNQRFAQGGG 120

Query: 880 PNGNKADQAIAGVASFL 896
            + +K + AI  V + +
Sbjct: 121 KDKSKKNDAIEKVKAMV 137


>gi|302325997|gb|ADL25198.1| threonine--tRNA ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 645

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 17/143 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS +H+L  A+  +        G  I   G  +D+    PI  ++ + IE  + +II 
Sbjct: 75  LRHSCSHVLAEAICDLFPGTKLAYGPAID-KGFYYDLMTPTPIQQSDFERIEKRMKEIIK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE------------DGGVHSSA 692
           ++ P V   ++ ED    G     G KY       ++  E            + G +   
Sbjct: 134 EDRPFVRCEVSAED----GLKRTEGDKYKTDNAQRALAREGSDGTLSFYVTGEPGKNFED 189

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G HV STG++    ++S S 
Sbjct: 190 LCAGPHVPSTGKLKNFKVLSMSG 212


>gi|238919782|ref|YP_002933297.1| threonyl-tRNA synthetase [Edwardsiella ictaluri 93-146]
 gi|259516479|sp|C5B846|SYT_EDWI9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238869351|gb|ACR69062.1| threonyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146]
          Length = 642

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 92/239 (38%), Gaps = 17/239 (7%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
            +   +  D   ++ D  R     + K      V+  +V+   L    + V  I  +++ 
Sbjct: 7   PDGSQRHFDHPVSVMDIARDIGPGLAKACIAGRVNGELVDACDLIDADATVAIITAKDQE 66

Query: 582 QLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            +  + HS  HLL HA+  +        G  I  +G  +DV     +T  +L+ ++  ++
Sbjct: 67  GVDILRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDLDHTLTQEDLERLDKRMH 125

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCG 695
           ++  ++  V+ + ++ ++A  +  A      Y   +   ++ ++D  G++       +C 
Sbjct: 126 ELAEKDYDVIKKKVSWQEARDAFVAR--DELYKVAILDENISHDDRPGLYHHEEYLDMCR 183

Query: 696 GTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G HV +        +   S            ++RI   T    +  L    ++L+  A 
Sbjct: 184 GPHVPNMRFCHHFKLQKSSGAYWRGDSDNKMLQRIYG-TAWADKKQLNAYLQRLEEAAK 241


>gi|218134037|ref|ZP_03462841.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991412|gb|EEC57418.1| hypothetical protein BACPEC_01927 [Bacteroides pectinophilus ATCC
           43243]
          Length = 585

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 3/134 (2%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
            ++NHS  HL+  A+  +        G  +  +G  +DV      I   ++ +IE  +  
Sbjct: 11  NTLNHSCAHLMAQAIKHLYPQAKFWVGPVV-AEGFYYDVDLGDDVIRDEDIAAIEKEMKK 69

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I      ++ + +++E+A+             + +   ++   + G  +  LC G HV +
Sbjct: 70  IAKTGKKIIRKEISKEEALEMFKDDEYKIDLINNLEDGNITCYEQGDFTD-LCRGPHVDN 128

Query: 702 TGEIMLLYIVSESS 715
                   ++  S 
Sbjct: 129 VKLCRNFKLIRHSG 142


>gi|291060195|gb|ADD72930.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 582

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 2/139 (1%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H++  A+  +        G  I   G  +D +  +P+  A+L  IE+ +  I+
Sbjct: 11  RLRHSLAHVMAEAVQALFPGTKLAVGPPIDY-GFYYDFSPPRPLCDADLAPIEEKMRAIL 69

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
               P V  +++R DA+A         +  +R+              + LC G HV S  
Sbjct: 70  RAGCPFVKEVVSRPDALARFKDEPFKQELIERISADDTLSLYHSGAFTDLCRGPHVQSMR 129

Query: 704 EIMLLYIVSESSIRAGIRR 722
           +I   +    +SI     R
Sbjct: 130 DINP-HAFKLTSIAGAYWR 147


>gi|297562207|ref|YP_003681181.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846655|gb|ADH68675.1| threonyl-tRNA synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 657

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 26/180 (14%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++  + ID +  R +   HS  H+L  A+  +        G  +  +G  +D  
Sbjct: 50  ELHEGDTVEPIAIDSEEGRAILR-HSTAHVLAQAVQELFPEAKLGIGPPV-ENGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKY----- 672
            ++P T A+LKSIE  +  I+ Q      R+++ E+A A          L+G K      
Sbjct: 108 VAEPFTPADLKSIEKKMQQIVKQGQRFDRRVVSDEEARAELATEPYKLELIGLKGGATEA 167

Query: 673 ----------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      +     +V    G +    LC G H+ +T  I    ++      A   R
Sbjct: 168 AEGAGVEVGAGELTIYDNVHPRTGELCWKDLCRGPHLPTTRVIPAFKLM---RTAAAYWR 224


>gi|15639823|ref|NP_219273.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026061|ref|YP_001933833.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|6094415|sp|O83809|SYT_TREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238689347|sp|B2S475|SYT_TREPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3323150|gb|AAC65804.1| threonyl-tRNA synthetase (thrS) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018636|gb|ACD71254.1| threonyl-tRNA synthetase [Treponema pallidum subsp. pallidum SS14]
          Length = 592

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 2/139 (1%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H++  A+  +        G  I   G  +D +  +P+  A+L  IE+ +  I+
Sbjct: 21  RLRHSLAHVMAEAVQALFPGTKLAVGPPIDY-GFYYDFSPPRPLCDADLAPIEEKMRAIL 79

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
               P V  +++R DA+A         +  +R+              + LC G HV S  
Sbjct: 80  RAGCPFVKEVVSRPDALARFKDEPFKQELIERISADDTLSLYHSGAFTDLCRGPHVQSMR 139

Query: 704 EIMLLYIVSESSIRAGIRR 722
           +I   +    +SI     R
Sbjct: 140 DINP-HAFKLTSIAGAYWR 157


>gi|157371398|ref|YP_001479387.1| threonyl/alanyl tRNA synthetase SAD [Serratia proteamaculans 568]
 gi|157323162|gb|ABV42259.1| Threonyl/alanyl tRNA synthetase SAD [Serratia proteamaculans 568]
          Length = 209

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
           V      +  + T F+ + GGQ  D G  +G    L++       +G  V H   E    
Sbjct: 24  VEDGGYAIELNATLFHPQGGGQPADGG-LLGTTPVLRV-----AQQGEKVLHFTAEPLP- 76

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             E  + +T+D + RR  +  HSA HL+   L    G       +   P   R       
Sbjct: 77  --EGPVSVTVDGELRRLHTRWHSAGHLIGW-LGETRGWR--PVKAHHWPGEGRITFVPDA 131

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
              + +   +   +  +IA + P     ++                      +  V + +
Sbjct: 132 EPQTLDQDFLHAELARLIAADFPRKQLTVD---------------------GLRQVGFGE 170

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
              +    CGGTHV S  E+  + I +   ++ G
Sbjct: 171 LPTYG---CGGTHVPSLAELGRINITAL-KMKKG 200


>gi|228921082|ref|ZP_04084417.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838628|gb|EEM83934.1| Threonyl-tRNA synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 640

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGKVNDGLYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRMYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
           +     +  +G  +D+     +   +L+ IE  +  I  +N+ +    ++RE+A      
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNMEDLRKIEKEMKKITNENIKIERVEVSREEAAKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDLLKLELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|300727911|ref|ZP_07061289.1| alpha-amylase family protein [Prevotella bryantii B14]
 gi|299774753|gb|EFI71367.1| alpha-amylase family protein [Prevotella bryantii B14]
          Length = 719

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +  N+ +    H+A HLL+  +  + G   S N + I     +         +  E K I
Sbjct: 571 NEHNKDEFPPAHTAEHLLNQLMVRMFGCERSHN-AHIERKKSKISYILDHKPSRQEEKEI 629

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +  +I  +L V   + +R D         L +   D VR+V +     G +    C 
Sbjct: 630 ERTMKQLIEDDLDVTYELKSRYDLPEGIQLDSLPSNAPDMVRLVRI-----GDYDVCPCI 684

Query: 696 GTHVSSTGEIMLLYIVSES-SIRAGIRRIEAI 726
           G HV STG+I    ++  +   +  + RI   
Sbjct: 685 GKHVRSTGQIGKFVMLGTNWDEKTHVFRIRFK 716


>gi|296394216|ref|YP_003659100.1| threonyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
 gi|296181363|gb|ADG98269.1| threonyl-tRNA synthetase [Segniliparus rotundus DSM 44985]
          Length = 683

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D    +  T  +L  +E  +  II 
Sbjct: 76  IRHSAAHVLAQAVQQEFPEAKLGIGPPI-KDGFYYDFRVDRAFTPEDLARLETRMRKIIK 134

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN-DRVRVVSVEYEDGGVHSS------- 691
            +     R++  E+A A          L+G K   D   V+ V   +  V+ +       
Sbjct: 135 ASQRFSRRVVEVEEAKAELANEPFKLELIGDKSGVDDPEVMEVGGTELTVYDNLNPRTGE 194

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                LC G H+ +T  I    +       A   R     G ++R  L          A 
Sbjct: 195 REWGDLCRGPHIPTTKHIPAFKLT---RSSAAYWR-----GDQSRDSLQRIYGTAWESAE 246

Query: 748 FL 749
            L
Sbjct: 247 AL 248


>gi|82523876|emb|CAI78599.1| threonyl-tRNA synthetase [uncultured delta proteobacterium]
          Length = 631

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 24/201 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA+H++  A+  +        G  I  +G  +D   ++  T  +L+ IE  +++II 
Sbjct: 68  LRHSASHIMAQAVMELFPGIKIAIGPAI-ENGFYYDFERAESFTPDDLEHIEKRMHEIIK 126

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +++P+V   +++E AI        G  Y   + +  +   +  ++       LC G H+ 
Sbjct: 127 KSVPIVREDISKEQAIEYFKQH--GEIYKVEL-LEDIADNNVSIYKQGDFVDLCRGPHLI 183

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG++    ++S   I     R               +++ L+ +      +   +   +
Sbjct: 184 HTGKLKAFKLLS---IAGAYWR------------GNEKNKMLQRIYGTAFPTSKELKEHL 228

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
             + EE +K       ++L L
Sbjct: 229 NHL-EEVKKRDHRKLGKELDL 248


>gi|85711636|ref|ZP_01042693.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
 gi|85694496|gb|EAQ32437.1| threonyl-tRNA synthetase [Idiomarina baltica OS145]
          Length = 638

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 72/221 (32%), Gaps = 23/221 (10%)

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            ++  +  + +     +     I HS  HLL HA   +        G  I  +G  +DV 
Sbjct: 49  EMIEHDARIEIVTPKDDDGLHIIRHSCAHLLGHAFKQLWPDAKMAIGPVID-NGFYYDVD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               +T  +L  +E  + ++      V+ + ++ ++A  +         Y   +    + 
Sbjct: 108 VDHTLTQDDLDKLEKRMKELAKTEYQVIKKKVSWQEARETFVERH--EPYKVEILDEDIP 165

Query: 683 YEDG-GVHSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            +   G++       +C G HV +        ++  +                A      
Sbjct: 166 TDANPGLYHHEEYIDMCRGPHVPTMKFCQHFKVMKMAG---------------AYWRGNS 210

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
            ++ L+ +       +  +   ++ + E  ++      K +
Sbjct: 211 DNKMLQRVYGTAWADKKQLKAYLQRLEEAEKRDHRKIGKAQ 251


>gi|315635477|ref|ZP_07890743.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
 gi|315480235|gb|EFU70902.1| threonine--tRNA ligase [Arcobacter butzleri JV22]
          Length = 602

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 11/178 (6%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D        + HS  HL+  A+  +        G  +  +G  +D   +  I+  EL +I
Sbjct: 31  DDSKESLDILRHSCAHLMAQAIKELYPEAKFFVGPVV-KEGFYYDFKVNSKISDDELPTI 89

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  + +I  + LP+      +E+         L       ++   +     G     LC 
Sbjct: 90  EKKMKEIADRKLPITRHETTKEEFYEKFKNDELKQAVLKNIKDDVLTIYRQGDF-EDLCR 148

Query: 696 GTHVSSTGEIMLLYIVSESSIRAG-------IRRIEAIT--GQRARSHLMGQDEKLKS 744
           G H+ +T  I    +   +    G       I RI  I    ++A        E+ K 
Sbjct: 149 GPHLPNTRMIRSFKLTRVAGAYLGGDEKNEMITRIYGIAFFDKQALFDYTRMLEEAKK 206


>gi|310815279|ref|YP_003963243.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
 gi|308754014|gb|ADO41943.1| threonyl-tRNA synthetase [Ketogulonicigenium vulgare Y25]
          Length = 648

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 17/176 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  +   G  +D   ++P T  +L +IE  +  II 
Sbjct: 74  IRHDLAHIMARAVQEIWPDVKVTIGP-VRDYGWFYDFDRAEPFTPEDLGAIEAQMKKIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
              PV T +  R  A+A       G  Y   +       E            LC G H+ 
Sbjct: 133 AREPVRTEVWERARALAYYEDR--GEPYKIELVNRIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEIML--LYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           STG++      +   +       S R  ++RI  +   R R  L      L+  A 
Sbjct: 191 STGQVPADGFKLTHVAGAYWLGDSSRPMLQRIYGVA-FRNREDLKAHMTMLEEAAK 245


>gi|157736342|ref|YP_001489025.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
 gi|157698196|gb|ABV66356.1| threonyl-tRNA synthetase [Arcobacter butzleri RM4018]
          Length = 602

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 11/178 (6%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D        + HS  HL+  A+  +        G  +  +G  +D   +  I+  EL +I
Sbjct: 31  DDSKESLDILRHSCAHLMAQAIKELYPEAKFFVGPVV-KEGFYYDFKVNSKISDDELPTI 89

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  + +I  + LP+      +E+         L       ++   +     G     LC 
Sbjct: 90  EKKMKEIADRKLPITRHETTKEEFYEKFKNDELKQAVLKNIKDDVLTIYRQGDF-EDLCR 148

Query: 696 GTHVSSTGEIMLLYIVSESSIRAG-------IRRIEAIT--GQRARSHLMGQDEKLKS 744
           G H+ +T  I    +   +    G       I RI  I    ++A        E+ K 
Sbjct: 149 GPHLPNTRMIRSFKLTRVAGAYLGGDEKNEMITRIYGIAFFDKQALFDYTRMLEEAKK 206


>gi|149195433|ref|ZP_01872516.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
 gi|149134438|gb|EDM22931.1| threonyl-tRNA synthetase [Caminibacter mediatlanticus TB-2]
          Length = 613

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 14/207 (6%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K          +E   +    +  +  D        I HSA HL+  A+  +        
Sbjct: 9   KIGDNIFDLQTIEAKNIDISDAKPIYFDDSEDALEIIRHSAAHLMAQAIKELYPDAKFYV 68

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  I  +G  +D+  S PIT  +LK+IE  +     + + +    +++++AI       L
Sbjct: 69  GPTI-ENGFYYDLKTSTPITDKDLKNIEKKMKQFAKKKIDITRYEISKDEAIEKFKDDEL 127

Query: 669 G-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGI 720
                      V   Y+ G      LC G H+ +T  +  + +   +       S +  +
Sbjct: 128 KQEVLKMIPSDVVSIYKQGDFED--LCRGPHLPNTKYLHNVKLQKVAGAYLGGDSNKEML 185

Query: 721 RRIE---AITGQRARSHLMGQDEKLKS 744
            R+      T +  + +L   +E LK 
Sbjct: 186 TRVYGTAFATKEALQEYLKRLEEALKR 212


>gi|308061413|gb|ADO03301.1| threonyl-tRNA synthetase [Helicobacter pylori Cuz20]
          Length = 612

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLTITKEVLTREQALERFKGDELKHAVMSKISGDVFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQMEEAKKR 217


>gi|254778840|ref|YP_003056945.1| threonyl-tRNA synthetase [Helicobacter pylori B38]
 gi|254000751|emb|CAX28675.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Helicobacter pylori B38]
          Length = 612

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   I+ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEILTREQALERFKGDELKHAVMSKISGDIFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|317052582|ref|YP_004113698.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
 gi|316947666|gb|ADU67142.1| threonyl-tRNA synthetase [Desulfurispirillum indicum S5]
          Length = 657

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 585 INHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           + HSA+H++  A+  + G   V       T +G  +D      +   +L+ IE  + +I 
Sbjct: 72  LRHSASHIMAQAVKDLFGGDKVKVAIGPSTSEGFYYDFDMEHRLVPEDLEKIETRMAEIA 131

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           A + P V R M R +AI +      G  +   +    +  +  G++       LC G H+
Sbjct: 132 AADQPFVCRKMERAEAINTFKQQ--GELFKVELLQQDILDDQVGIYQQGSFLDLCRGPHI 189

Query: 700 SSTGEIML--LYIVSESSIRAGIRR 722
            STG++      ++S   I     R
Sbjct: 190 PSTGKLGAGSFKLLS---IAGAYWR 211


>gi|254453851|ref|ZP_05067288.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
 gi|198268257|gb|EDY92527.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 238]
          Length = 649

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 17/176 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  DG  +D    KP T  +L +IE  + +II 
Sbjct: 75  IRHDLAHIMARAVQELWPDTQVTIGPVI-KDGWYYDFDRKKPFTPDDLATIEKKMKEIIN 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T + +RE AI        G  Y   +       E            LC G H+ 
Sbjct: 134 KRDAVRTEVWDREVAIKYYEDR--GEPYKVELINGIPGDEPLRMYWHGDWQDLCRGPHLQ 191

Query: 701 STGEI-----MLLYIVSES----SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +TG++      L+ I        S RA ++RI  +  Q  +  L      L+  A 
Sbjct: 192 NTGQVPGDSWKLMSIAGAYWRGDSDRAMLQRIYGVAFQN-KEQLRAHMNMLEEAAK 246


>gi|150007315|ref|YP_001302058.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|255014060|ref|ZP_05286186.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_7]
 gi|256839604|ref|ZP_05545113.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
 gi|166225472|sp|A6L9S2|SYT_PARD8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149935739|gb|ABR42436.1| threonyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503]
 gi|256738534|gb|EEU51859.1| threonyl-tRNA synthetase [Parabacteroides sp. D13]
          Length = 651

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ L        + +  HS+ HL+  AL  +        G  I  +G  +DV  
Sbjct: 50  PINDDATVKLLKWEDEEGKHAFWHSSAHLMAEALQELYPGIKFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            + +    +  +IE  + +++A+   +  + + + DA       + G +  +    +  E
Sbjct: 109 GEAVIKEGDFAAIEAKMLELVAKKEEIKRQDITKADA-----MKMFGDRGEEYKTELISE 163

Query: 683 YEDGGVHS------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            EDG + +      + LC G H+ +T  +  + I+S   +     R
Sbjct: 164 LEDGTITTYTQGSFTDLCRGPHLPNTSYLKAVKILS---VAGAYWR 206


>gi|317008795|gb|ADU79375.1| threonyl-tRNA synthetase [Helicobacter pylori India7]
          Length = 612

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 SKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|15611183|ref|NP_222834.1| threonyl-tRNA synthetase [Helicobacter pylori J99]
 gi|8928389|sp|Q9ZMV3|SYT_HELPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4154621|gb|AAD05692.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 612

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTTSKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    + RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 SKLAITKETLTREQALERFKGDELKHAVMSKISGDIFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|86149734|ref|ZP_01067964.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840002|gb|EAQ57261.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
          Length = 602

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|88597312|ref|ZP_01100547.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561885|ref|YP_002343664.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|73919778|sp|Q9PIS3|SYT_CAMJE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88190373|gb|EAQ94347.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359591|emb|CAL34375.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284925497|gb|ADC27849.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928137|gb|EFV07455.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 602

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|317176942|dbj|BAJ54731.1| threonyl-tRNA synthetase [Helicobacter pylori F16]
          Length = 612

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|315930217|gb|EFV09332.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305]
          Length = 602

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|308183917|ref|YP_003928050.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
 gi|308059837|gb|ADO01733.1| threonyl-tRNA synthetase [Helicobacter pylori SJM180]
          Length = 612

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +   +D   S  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EERFYYDFKTSSKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    + RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKETLTREQALERFKGDELKHAVMSKISGDIFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|262382112|ref|ZP_06075250.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298375301|ref|ZP_06985258.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
 gi|262297289|gb|EEY85219.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_33B]
 gi|298267801|gb|EFI09457.1| threonine--tRNA ligase [Bacteroides sp. 3_1_19]
          Length = 651

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ L        + +  HS+ HL+  AL  +        G  I  +G  +DV  
Sbjct: 50  PINDDATVKLLKWEDEEGKHAFWHSSAHLMAEALQELYPGIKFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            + +    +  +IE  + +++A+   +  + + + DA       + G +  +    +  E
Sbjct: 109 GEAVIKEGDFAAIEAKMLELVAKKEEIKRQDITKADA-----MKMFGDRGEEYKTELISE 163

Query: 683 YEDGGVHS------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            EDG + +      + LC G H+ +T  +  + I+S   +     R
Sbjct: 164 LEDGTITTYTQGSFTDLCRGPHLPNTSYLKAVKILS---VAGAYWR 206


>gi|229060032|ref|ZP_04197403.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
 gi|228719251|gb|EEL70859.1| Threonyl-tRNA synthetase [Bacillus cereus AH603]
          Length = 639

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 9/174 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G     +   R  +     + ++T+D     +++  HSA H+L  A+  I G +V
Sbjct: 37  KKAVAGKVNDQSFDLRRNIEESAKVEIITMDSDEGVKIAR-HSAAHILAQAVKRIYG-NV 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                 I  +G  +D+     +   +L  IE  +  II +N+ +    ++RE+       
Sbjct: 95  KLGVGPIIENGFYYDMDLPSSVNVEDLPKIEKEMKKIINENVKIERVEVSREEVKKLF-- 152

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +       E   ++       LC G H+ STG +    +   S 
Sbjct: 153 QEMNDHLKLELLEAIPNDESVTIYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206


>gi|119383706|ref|YP_914762.1| threonyl-tRNA synthetase [Paracoccus denitrificans PD1222]
 gi|166225473|sp|A1B0M2|SYT_PARDP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119373473|gb|ABL69066.1| Ser-tRNA(Thr) hydrolase [Paracoccus denitrificans PD1222]
          Length = 648

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 17/176 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  +   G  +D   ++P T  +L +IE  +  IIA
Sbjct: 74  IRHDLAHIMARAVQELWPDVKVTIGP-VRDQGWFYDFDRAEPFTPEDLGAIEQRMKQIIA 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
              PV T + +R+ A A   A   G  +   +     E E            LC G H+ 
Sbjct: 133 ARDPVRTEVWDRDRARAHYEAQ--GEPFKIELLDRIPEGEPIRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESS---IRAGIR----RIEAITGQRARSHLMGQDEKLKSLAS 747
            TG++      +   +    +    R    RI  +   R R  L      L+  A 
Sbjct: 191 HTGQVPADAFKLTHVAGAYWLGDASRPMLQRIYGVA-FRNRDDLKAHLTMLEEAAK 245


>gi|169597767|ref|XP_001792307.1| hypothetical protein SNOG_01671 [Phaeosphaeria nodorum SN15]
 gi|111070200|gb|EAT91320.1| hypothetical protein SNOG_01671 [Phaeosphaeria nodorum SN15]
          Length = 164

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILR- 566
           +   +    T F+A+ GGQ  DTG    +G    +  V+K A +G   H         + 
Sbjct: 53  EPFILTTPSTIFHAQGGGQPSDTGTITSNGTTFAVHQVRKPAEDGAIFHLGTFSPEGQKF 112

Query: 567 -TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             E      ID   R   S  H+A H++  A++T++
Sbjct: 113 VEEQDGEQNIDVDKRVLHSRIHTAGHVIGLAINTLM 148


>gi|301310685|ref|ZP_07216624.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
 gi|300832259|gb|EFK62890.1| threonine--tRNA ligase [Bacteroides sp. 20_3]
          Length = 649

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ L        + +  HS+ HL+  AL  +        G  I  +G  +DV  
Sbjct: 50  PINDDATVKLLKWEDEEGKHAFWHSSAHLMAEALQELYPGIKFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            + +    +  +IE  + +++A+   +  + + + DA       + G +  +    +  E
Sbjct: 109 GEAVIKEGDFAAIEAKMLELVAKKEEIKRQDITKADA-----MKMFGDRGEEYKTELISE 163

Query: 683 YEDGGVHS------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            EDG + +      + LC G H+ +T  +  + I+S   +     R
Sbjct: 164 LEDGTITTYTQGSFTDLCRGPHLPNTSYLKAVKILS---VAGAYWR 206


>gi|291566329|dbj|BAI88601.1| threonyl-tRNA synthetase [Arthrospira platensis NIES-39]
          Length = 622

 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 55/173 (31%), Gaps = 30/173 (17%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
              +   I H+  H+L  A+  +        G   T  G  +D    +P T  +L  I  
Sbjct: 18  DREKLRRIRHTCAHILAMAVQKLFPETKVAIGPT-TDTGFYYDFDRKEPFTPEDLGEITK 76

Query: 638 NVNDIIAQNLPVVTRIMNREDAI-------------------ASGAAALLGTKYNDRVRV 678
            +  II  NLPV+   +NRE                       +           D  R 
Sbjct: 77  EMKRIIKGNLPVIREEVNREQMRGEIQQLNEPLKLEILDSIPETETMTRYFIGSPDMGRA 136

Query: 679 VSVEYE---------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           V  E E                 LC G H++STGEI     ++  S+     R
Sbjct: 137 VHPEVEPSLMEPVVIPPQEFWWDLCAGPHLNSTGEINPDA-LALESVAGAYWR 188


>gi|297379344|gb|ADI34231.1| threonyl-tRNA synthetase [Helicobacter pylori v225d]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|14590471|ref|NP_142539.1| alanyl-tRNA synthetase [Pyrococcus horikoshii OT3]
 gi|74570801|sp|O58307|ALAXS_PYRHO RecName: Full=Alanyl-tRNA editing protein AlaX-S; Short=AlaX-S;
           AltName: Full=Alanyl-tRNA deacylase AlaX-S; AltName:
           Full=PhoAlaX
 gi|56966314|pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
           Pyrococcus Horikoshii Ot3
 gi|56966315|pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
           Pyrococcus Horikoshii Ot3
 gi|56966316|pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
           Pyrococcus Horikoshii Ot3
 gi|73535490|pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With Zinc
 gi|73535491|pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With Zinc
 gi|73535492|pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With Zinc
 gi|3256980|dbj|BAA29663.1| 157aa long hypothetical alanyl-tRNA synthetase [Pyrococcus
           horikoshii OT3]
          Length = 157

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             HSA H++  A+  +LGS      S  +  +     V   +  +  E++ IE   N+ +
Sbjct: 7   RTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +N P+    + RE+A       +        D   +  V  ED  V+    C   H  +
Sbjct: 67  KENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVN---ACNKEHTKT 123

Query: 702 TGEIMLLYIVSES-SIRAGIRRIEA 725
           TGEI  + I         G+  I  
Sbjct: 124 TGEIGPIKIRKVRFRKSKGLLEIHF 148


>gi|261837575|gb|ACX97341.1| threonyl-tRNA synthetase [Helicobacter pylori 51]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|237750837|ref|ZP_04581317.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
 gi|229373282|gb|EEO23673.1| threonyl-tRNA synthetase [Helicobacter bilis ATCC 43879]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 13/179 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D  N  ++   H+  HLL  A+  +        G  +  +G  +D      I   +L +I
Sbjct: 36  DTPNAHEIIR-HTCAHLLAEAIKALYPEAKFFVGPVVD-EGFYYDFKVDSKIGVDDLATI 93

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  + +I  +   +    ++R++AI   +   L      ++          G     LC 
Sbjct: 94  ESKMKEIAKKGHKLTKIHLSRKEAIERFSGDELKQAVMSKIEGDDFSIYQQGDF-EDLCR 152

Query: 696 GTHVSSTGEIMLLYIVSESSIRAG-------IRRIEAIT---GQRARSHLMGQDEKLKS 744
           G H+     +    +   S    G       + RI  I     +  + +L   +E  K 
Sbjct: 153 GPHLPHLKLLQAFKLTKISGAYLGGDEDSEVLTRIYGIAFAEKENLKQYLFQLEEAKKR 211


>gi|217034632|ref|ZP_03440039.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
 gi|216942927|gb|EEC22414.1| hypothetical protein HP9810_881g25 [Helicobacter pylori 98-10]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|219113189|ref|XP_002186178.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583028|gb|ACI65648.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 684

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 32/215 (14%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA------------ 630
           L I HS+ H++  A+  I        G  I   G  +D    +                 
Sbjct: 83  LRIRHSSAHVMAMAVQRIFPEAQVTIGPWID-SGFYYDFFFPERTDEESGETIPARKLSE 141

Query: 631 -ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA--ALLGTKYNDRVRVVSVEYEDGG 687
            +LK ++  ++ II ++ P+    ++RE+A             +  D ++   +     G
Sbjct: 142 QDLKDVKKAMDKIIGKDYPISREDVSREEARRRIEKIGEPFKLEILDSIKTEPITLYHIG 201

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-A 746
                LC G HV STG++     +   S+     R                 E L+ + A
Sbjct: 202 DEWWDLCAGPHVDSTGKL-PKKAIQLQSVAGAYWR------------GDENREMLQRIYA 248

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           +  K  Q   + + +++ EE +K       +KL L
Sbjct: 249 TAWKDPQQ--LKQYKKMLEEAKKRDHRMLGKKLDL 281


>gi|296104294|ref|YP_003614440.1| hypothetical protein ECL_03957 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058753|gb|ADF63491.1| hypothetical protein ECL_03957 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 226

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 65/219 (29%), Gaps = 34/219 (15%)

Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571
            +      F+ + GGQ  D G  + D   + +  V+K+  G+ V +          E  +
Sbjct: 31  WIALQDNIFHPQGGGQPADLGW-VND---IPVV-VKKQESGLVVLYPQ-SPFSPPVETKV 84

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA- 630
              +    R   +  H+A HLL+  +    G    +         + F    +  I +  
Sbjct: 85  SSVVSADARAYHAALHTAGHLLNWEMRQ-FGWMAVRGHHFPGESRVEFSAIDASAIPADR 143

Query: 631 -ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
            E   IE  +   + +   + +                         R+  +   +    
Sbjct: 144 LEAAEIERIICQRLQKGAEIRSWF-------------------EGTTRLCQINQSEA--- 181

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
               C GTH     +I    I      + G  RI    G
Sbjct: 182 --MPCAGTHTDDLAKISSFNI-KAIKFKKGTLRISYDAG 217


>gi|188526926|ref|YP_001909613.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
 gi|238691884|sp|B2URV1|SYT_HELPS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188143166|gb|ACD47583.1| threonyl-tRNA synthetase [Helicobacter pylori Shi470]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|257076511|ref|ZP_05570872.1| threonyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 668

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 21/173 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HLL +A+  +    +  N S  + D   +D    KP++  +   IE+ + +++  N
Sbjct: 65  HSTAHLLANAIVDLYPDAL-PNTSNESEDTFYYDFNM-KPVSIEDFPLIEEKMQELVQAN 122

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
           +P++ +I+ + + +   +      KY  D++     + E+  ++        C G HV S
Sbjct: 123 IPIMRKILPKNEILKEFSYN----KYKLDKINENVPDGENSSIYIQGNYKEFCRGPHVPS 178

Query: 702 TGEIMLLYIVSESSI-------RAGIRRIEAIT---GQRARSHLMGQDEKLKS 744
           TG I    ++S SS        +  + RI        ++ ++ L+ ++E +K 
Sbjct: 179 TGYIGAFKLLSISSTNYEGDVNKDKMIRIYGTAFPDKKQLKAFLLRREEAIKR 231


>gi|163746007|ref|ZP_02153366.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
 gi|161380752|gb|EDQ05162.1| threonyl-tRNA synthetase [Oceanibulbus indolifex HEL-45]
          Length = 648

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 19/175 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I  DG  +D    +P T  +L +IE  + +II +
Sbjct: 75  RHDLAHIMARAVQEIWPDTKVTIGPVI-KDGWYYDFDRKEPFTPEDLGAIEKKMKEIINK 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
              V T + +R  AI       L   Y   +       E            LC G H+  
Sbjct: 134 RDAVRTEVWDRARAIKHYED--LNEPYKVELINAIPGDEPLRMYWHGDWQDLCRGPHLQH 191

Query: 702 TGEI--MLLYIVSESSI-------RAGIRRIEAI--TG-QRARSHLMGQDEKLKS 744
           TG++      ++S +         RA ++RI  +  TG ++ R+HL   +E  K 
Sbjct: 192 TGQVPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLRAHLNMLEEAAKR 246


>gi|163735041|ref|ZP_02142478.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
 gi|161391823|gb|EDQ16155.1| threonyl-tRNA synthetase [Roseobacter litoralis Och 149]
          Length = 648

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I  DG  +D   ++P +  +L  IE  + +II +
Sbjct: 75  RHDLAHIMARAVQEIWPETKVTIGPVI-KDGWYYDFDRAEPFSPEDLGLIEKKMKEIINK 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
             PV T + +R  AIA   A      Y   +       E            LC G H+  
Sbjct: 134 RDPVRTEVWDRPRAIAFYEAN--NEPYKVELIDAIPGDEPLRMYWHGDWQDLCRGPHLQH 191

Query: 702 TGEI--MLLYIVSESSIRAGIRR 722
           TG++      ++S   I     R
Sbjct: 192 TGQVPGDAFKLMS---IAGAYWR 211


>gi|317179928|dbj|BAJ57714.1| threonyl-tRNA synthetase [Helicobacter pylori F32]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|261838989|gb|ACX98754.1| threonyl-tRNA synthetase [Helicobacter pylori 52]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|257076634|ref|ZP_05570995.1| alanyl-tRNA synthetase [Ferroplasma acidarmanus fer1]
          Length = 237

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 9/173 (5%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSL 571
           +  D+T F+    GQ  D G  + DG    I DV    +G ++H   ++         ++
Sbjct: 28  LTVDKTIFFPTMDGQQNDKGEIVIDGKTYGIVDVW--TDGDYIHLISLDTYPENVVGKTI 85

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
              +D+  R       +A  ++          +     S    D    D+     IT   
Sbjct: 86  QQKLDWDVRSIHMRFRTAMFIISGLAYKFY--NAKSRISQTYDDKAWVDLYIDN-ITEDI 142

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYNDRVRVVSV 681
           +K+I +  N I+ QN+P+    MN  D           T     ++ +RV+++
Sbjct: 143 VKNITEEANKIVKQNIPIKIEYMNNNDFPREKQRMSYSTGTLPDDEELRVINI 195


>gi|16081463|ref|NP_393810.1| threonyl-tRNA synthetase [Thermoplasma acidophilum DSM 1728]
 gi|22654139|sp|Q9HL99|SYT_THEAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|10639503|emb|CAC11475.1| threonine--tRNA ligase related protein [Thermoplasma acidophilum]
          Length = 660

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HLL +A++ +    +   G  +  +G  +D    KPI   +L  IED +  I  
Sbjct: 59  LRHSAAHLLANAVTNLYPDALPNTGPVV-ENGFYYDFDM-KPIGEEDLAKIEDEMRRIQK 116

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+   +  + D +   A      +   D V   S  Y  G      LC G HV STG
Sbjct: 117 ENVPIERIVYQKADLLRIFAKNPYKIRIIEDNVSDASSVYRQGNF--VDLCLGPHVPSTG 174

Query: 704 EIMLLYIVSESSIRAGIRR-IEAITGQRARSHLMGQDEKLKS 744
            I    ++   +I + + +  E+ T  R        ++ LK 
Sbjct: 175 YIKAFKLL---NIASAVYKHDESKTLVRIYGTAFPDEKLLKQ 213


>gi|317181405|dbj|BAJ59189.1| threonyl-tRNA synthetase [Helicobacter pylori F57]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDKFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|284054770|ref|ZP_06384980.1| threonyl-tRNA synthetase [Arthrospira platensis str. Paraca]
          Length = 525

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 55/173 (31%), Gaps = 30/173 (17%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
              +   I H+  H+L  A+  +        G   T  G  +D    +P T  +L  I  
Sbjct: 18  DREKLRRIRHTCAHILAMAVQKLFPETKVAIGPT-TDTGFYYDFDRKEPFTPEDLGEITK 76

Query: 638 NVNDIIAQNLPVVTRIMNREDAI-------------------ASGAAALLGTKYNDRVRV 678
            +  II  NLPV+   +NRE                       +           D  R 
Sbjct: 77  EMKRIIKGNLPVIREEVNREQMRGEIQQLNEPLKLEILDSIPETETMTRYFIGSPDMGRA 136

Query: 679 VSVEYE---------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           V  E E                 LC G H++STGEI     ++  S+     R
Sbjct: 137 VHPEVEPSLMEPVVIPPQEFWWDLCAGPHLNSTGEINPDA-LALESVAGAYWR 188


>gi|210634040|ref|ZP_03297958.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
 gi|210158984|gb|EEA89955.1| hypothetical protein COLSTE_01876 [Collinsella stercoris DSM 13279]
          Length = 587

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 10/154 (6%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
               V  ++        I HSA H++  A+  +        G   T +G  +DV      
Sbjct: 6   NDGSVAEVESAEEALHIIRHSAAHIMAQAIKRLYPEADFAYGPA-TDNGFYYDVDLGDAT 64

Query: 628 TSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSV 681
            S  +L +IE  +  I  +NL      + R +AIA       G KY      D      +
Sbjct: 65  LSEDDLPAIEAEMKKIAKENLKFSVFELPRAEAIA--LMEERGEKYKVEHIGDLPEDARI 122

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            +   G +   +C G H++ T  +    +   S 
Sbjct: 123 TFFQQGDYID-MCVGPHLTYTKALKAFKLTGVSG 155


>gi|317011967|gb|ADU82575.1| threonyl-tRNA synthetase [Helicobacter pylori Lithuania75]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 SKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|300711550|ref|YP_003737364.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
 gi|299125233|gb|ADJ15572.1| threonyl-tRNA synthetase [Halalkalicoccus jeotgali B3]
          Length = 640

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 9/194 (4%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG  + D    IG G+       +    G+     + +   +  ++ + +  +  +   
Sbjct: 16  EAGSTVEDVAYEIGPGL------GRDTVAGVVDGEFVAKEHPIEKDVEIEIVTESSDEYL 69

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            ++ HSA H+   AL  +        G   T DG  +DVT  + +  A+L+ I     +I
Sbjct: 70  DALRHSAAHVFAQALQRLHSEATLTIGPW-TDDGFYYDVTGVE-LDEADLEEISAEAEEI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I  +LP+    M+RE+A               +                  LC G HV+S
Sbjct: 128 IEADLPIERVEMSREEAFEYYEDNPFKREILEEEAAGEDPVSFYEQAEFRDLCRGPHVAS 187

Query: 702 TGEIMLLYIVSESS 715
           TGEI    ++  S 
Sbjct: 188 TGEIGGFALLEISG 201


>gi|227501051|ref|ZP_03931100.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227216824|gb|EEI82222.1| threonine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 667

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++HL+  A++ +  +     G  I  DG  +D+      T  +L+ IE  + ++  ++
Sbjct: 100 HTSSHLMAAAINELYPNTKFAIGPAIN-DGFYYDMDLEHRFTPEDLEKIEKKMLELAKKD 158

Query: 647 LPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           L +    ++R +A+          K     D      +     G     LC G H+ S  
Sbjct: 159 LKLERVEISRNEALEMFKKDKQDYKVELIEDLPEDEKITLYKMGDVFVDLCRGPHLES-- 216

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
              ++  V   +I     R     G   R  L          A  L              
Sbjct: 217 -TKVIKAVKLKTIAGAYWR-----GDSDRQMLQRIYGISFEKAKQL-------------- 256

Query: 764 WEEYRKLQLIHAKR 777
            EEY +LQ    KR
Sbjct: 257 -EEYEELQKEIEKR 269


>gi|116515338|ref|YP_816901.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
 gi|161410743|ref|NP_359065.2| threonyl-tRNA synthetase [Streptococcus pneumoniae R6]
 gi|73621971|sp|Q8DNX8|SYT_STRR6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122278253|sp|Q04JD7|SYT_STRP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116075914|gb|ABJ53634.1| threonyl-tRNA synthetase [Streptococcus pneumoniae D39]
          Length = 647

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 75/206 (36%), Gaps = 20/206 (9%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVND 641
             + HSATHL   A   +        G  I  DG  +D  H+   I++ +L  IE+ +  
Sbjct: 69  PILRHSATHLFAQAARRLFPDIHLGVGPAI-EDGFYYDTDHTAGQISNEDLPRIEEEMQK 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGG 696
           I+ +N P +   + +++A            Y   +     E E G           LC G
Sbjct: 128 IVKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV STG I + +++    +     R
Sbjct: 184 PHVPSTGRIQIFHLL---HVAGAYWR 206


>gi|254487235|ref|ZP_05100440.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
 gi|214044104|gb|EEB84742.1| threonyl-tRNA synthetase [Roseobacter sp. GAI101]
          Length = 648

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 19/175 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I  DG  +D   ++P T  +L  IE  + +II  
Sbjct: 75  RHDLAHIMARAVQEIWPDTKVTIGPVI-KDGWYYDFDRAEPFTPEDLGVIEKKMKEIINA 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
             PV T + +R  AI       L   Y   +       E            LC G H+  
Sbjct: 134 RDPVRTEVWDRPRAIKHYQD--LDELYKVELIESIPGDEPLRMYWHGDWQDLCRGPHLQH 191

Query: 702 TGEI--MLLYIVSES-------SIRAGIRRIEAI--TG-QRARSHLMGQDEKLKS 744
           TG++      ++S +       S RA ++RI  +  TG ++ R+HL   +E  K 
Sbjct: 192 TGQVPGDSFKLMSIAGAYWRGDSNRAMLQRIYGVAFTGKEKLRAHLNMLEEAAKR 246


>gi|15459130|gb|AAL00276.1| Threonyl-tRNA synthetase 1 [Streptococcus pneumoniae R6]
          Length = 660

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 75/206 (36%), Gaps = 20/206 (9%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 28  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 81

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVND 641
             + HSATHL   A   +        G  I  DG  +D  H+   I++ +L  IE+ +  
Sbjct: 82  PILRHSATHLFAQAARRLFPDIHLGVGPAI-EDGFYYDTDHTAGQISNEDLPRIEEEMQK 140

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGG 696
           I+ +N P +   + +++A            Y   +     E E G           LC G
Sbjct: 141 IVKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRG 196

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV STG I + +++    +     R
Sbjct: 197 PHVPSTGRIQIFHLL---HVAGAYWR 219


>gi|254466098|ref|ZP_05079509.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
 gi|206687006|gb|EDZ47488.1| threonyl-tRNA synthetase [Rhodobacterales bacterium Y4I]
          Length = 648

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHVMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGAIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T +  R+ AI           Y   +       E            LC G H+ 
Sbjct: 133 KRDEVRTEVWERDRAIQHYTDN--NEPYKVELIESIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSES-------SIRAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
            TG++      ++S +       S RA ++RI  +  TG+     HL   +E  K 
Sbjct: 191 HTGQLPGDAFKLMSIAGAYWRGDSSRAMLQRIYGVAFTGKEKLKAHLHMLEEAAKR 246


>gi|295093898|emb|CBK82989.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Coprococcus sp.
           ART55/1]
          Length = 587

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT--SAELKSIEDNVND 641
           ++NHS  HL+  A+  +        G  +  +G  +DV     +     +L +IE  +  
Sbjct: 12  TLNHSCAHLMAQAIKHLYPQAKFWVGPVV-AEGFYYDVDLGDDVIRGEEDLAAIEKEMKK 70

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I      ++ + +++E+A+             + +   ++   + G  +  LC G HV +
Sbjct: 71  IAKSGKKIIRKEISKEEALEMFKDDEYKLDLINGLEDGTITCYEQGDFTD-LCRGPHVDN 129

Query: 702 TGEIMLLYIVSES-------SIRAGIRRIEAIT 727
                   ++  S       S    ++RI  + 
Sbjct: 130 VKLCRNFKLIRHSGAYWKGDSKNKVLQRIYGVC 162


>gi|163814284|ref|ZP_02205673.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
 gi|158449919|gb|EDP26914.1| hypothetical protein COPEUT_00435 [Coprococcus eutactus ATCC 27759]
          Length = 587

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT--SAELKSIEDNVND 641
           ++NHS  HL+  A+  +        G  +  +G  +DV     +     +L +IE  +  
Sbjct: 12  TLNHSCAHLMAQAIKHLYPQAKFWVGPVV-AEGFYYDVDLGDDVIRGEEDLAAIEKEMKK 70

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I      ++ + +++E+A+             + +   ++   + G  +  LC G HV +
Sbjct: 71  IAKSGKKIIRKEISKEEALEMFKDDEYKLDLINGLEDGTITCYEQGDFTD-LCRGPHVDN 129

Query: 702 TGEIMLLYIVSES-------SIRAGIRRIEAIT 727
                   ++  S       S    ++RI  + 
Sbjct: 130 VKLCRNFKLIRHSGAYWKGDSKNKVLQRIYGVC 162


>gi|298709340|emb|CBJ31276.1| ATP binding / tRNA ligase/ threonine-tRNA ligase [Ectocarpus
           siliculosus]
          Length = 470

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
           L I H++ H++  A+  +        G  I  +G  +D  + +   +  +LK I+  ++ 
Sbjct: 106 LKIRHTSAHVMAMAVQRLFPGTQVTIGPWID-NGFYYDFYNEETTMTDSDLKKIKKEMDK 164

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           II Q LP+V   + RE+A +   A       +  D ++   +     G     LC G HV
Sbjct: 165 IIRQKLPLVREEVTREEARSRIEALGEPFKLEILDSIKTEPITLYHVGDQWWDLCAGPHV 224

Query: 700 SSTGEI 705
            +TG++
Sbjct: 225 ETTGDL 230


>gi|84391304|ref|ZP_00991635.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
 gi|84376593|gb|EAP93471.1| threonyl-tRNA synthetase [Vibrio splendidus 12B01]
          Length = 460

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+     +T  +L+ I+  + ++   
Sbjct: 73  RHSCAHLLGHAIKQLFPEAKMAIGPTID-NGFYYDIDLEHSLTQEDLEKIDKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHVS 700
              VV + ++ ++A  +  A   G  Y   +   +V  +D  G++       +C G HV 
Sbjct: 132 KYQVVKKKVSWQEARDAFEAR--GEAYKIEILDENVSKDDRPGLYHHEEYIDMCRGPHVP 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
             G      ++   ++     R
Sbjct: 190 HMGFCQHFTLL---NVAGAYWR 208


>gi|208434081|ref|YP_002265747.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
 gi|238065115|sp|B5Z9Q1|SYT_HELPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|208432010|gb|ACI26881.1| threonyl-tRNA synthetase [Helicobacter pylori G27]
          Length = 612

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDESNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|218245600|ref|YP_002370971.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|257058646|ref|YP_003136534.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
 gi|218166078|gb|ACK64815.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8801]
 gi|256588812|gb|ACU99698.1| threonyl-tRNA synthetase [Cyanothece sp. PCC 8802]
          Length = 607

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 23/198 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+ +H++  A+  +        G   T  G  +D    +P T   LK I+  +  II
Sbjct: 28  RIRHTTSHIMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTEQNLKDIKKEMIKII 86

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVS 700
            + LPV+   +  E+A        L   Y   +       +     G     LC G HV 
Sbjct: 87  NRKLPVIREEVTPEEAKKR--IEQLQEPYKLEILEGLQPPITLYHLGDQWWDLCAGPHVE 144

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-- 758
           +TG+I         ++     R     G   ++ L                +   +    
Sbjct: 145 TTGDINP-KAFDLETVAGAYWR-----GDETKAQLQRIYGTAWE-------TPEQLTEYK 191

Query: 759 --RVEEIWEEYRKLQLIH 774
             + E +  ++RKL    
Sbjct: 192 RRKEEALKRDHRKLGKEL 209


>gi|315586098|gb|ADU40479.1| threonine--tRNA ligase [Helicobacter pylori 35A]
 gi|317179509|dbj|BAJ57297.1| threonyl-tRNA synthetase [Helicobacter pylori F30]
          Length = 612

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|228478293|ref|ZP_04062901.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
 gi|228249972|gb|EEK09242.1| threonyl-tRNA synthetase [Streptococcus salivarius SK126]
          Length = 648

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 28/258 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV STG I + +++   ++     R  +      R +     +K K L ++LK       
Sbjct: 185 HVPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRIYGTAWFDK-KDLKAYLK------- 233

Query: 758 GRVEEIWEE-YRKLQLIH 774
            R+EE  E  +RKL    
Sbjct: 234 -RLEEAKERDHRKLGKEL 250


>gi|308062983|gb|ADO04870.1| threonyl-tRNA synthetase [Helicobacter pylori Sat464]
          Length = 612

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 LKLAITKEVLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|33866012|ref|NP_897571.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
 gi|73919836|sp|Q7U662|SYT_SYNPX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33638987|emb|CAE07993.1| threonyl-tRNA synthetase [Synechococcus sp. WH 8102]
          Length = 611

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 23/242 (9%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L I HS +H++  A+  +        G   T  G  +D  +  P T A+LK+I+  + 
Sbjct: 33  QLLKIRHSMSHVMAMAVQQLFPKARVTIGPW-TESGFYYDFDNPDPFTEADLKAIKKGMI 91

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHV 699
            II + +P+    + R +A     A     K          +     G     LC G HV
Sbjct: 92  KIINKKVPLERVEVTRAEAETKIKAQNEPYKLEILEGLQDPITLYTLGEDWWDLCAGPHV 151

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG++         S+     R     G   ++ L             L          
Sbjct: 152 EHTGQLNA-KAFELESVAGAYWR-----GDETKAQLHRIYGTAWETPEQL---------- 195

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
                 E+++ +    +R  +   +DL    I D      +        ++ +++   ++
Sbjct: 196 -----AEHKRRKEEALRRDHRRIGKDLDLFSIEDEAGAGLVFWHPRGARMRLLIEEFWRQ 250

Query: 820 IQ 821
             
Sbjct: 251 AH 252


>gi|325848534|ref|ZP_08170194.1| threonine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480762|gb|EGC83819.1| threonine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 641

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 75/206 (36%), Gaps = 18/206 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  +GD    I +G  L  + V     G  +     E     ++  +V   D + +  
Sbjct: 15  EKGVSVGDVTKDISEG--LFRSAVGAVVNGKVM--GYAEPINEDSDFKVVKFEDKEGKE- 69

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H+++H++  A+  +        G  I  +G  +D+         +L  IE  + +I
Sbjct: 70  -IFWHTSSHVMAAAIKEMWPEAKFAIGPAID-NGFYYDIDLEHRFVPEDLPKIEAKMKEI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGG 696
             ++L ++ + ++R +A+          +Y   +     E      YE G      LC G
Sbjct: 128 AKKDLKMIRKEISRAEALEYF--KKENQEYKVELIEDLPEDEIITLYEMGDDVFVDLCKG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            H+        +  V  +SI     R
Sbjct: 186 PHL---LSTKAIKAVKLNSIAGAYWR 208


>gi|282898001|ref|ZP_06305996.1| Threonyl-tRNA synthetase [Raphidiopsis brookii D9]
 gi|281197145|gb|EFA72046.1| Threonyl-tRNA synthetase [Raphidiopsis brookii D9]
          Length = 224

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +  A+  +        G  I  +G  +D  + +P +  +LK+I+  +  II + LP++  
Sbjct: 1   MAMAVQKLFPKAQVTIGPWI-ENGFYYDFDNPEPFSDKDLKAIQKEMVKIINRKLPLIRE 59

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVSSTGEIMLL 708
            ++RE+A        +   Y   +        +     G     LC G HV +T +I   
Sbjct: 60  EVSREEAKKR--IEKIQEPYKLEILADIKQEPITIYHLGDEWWDLCAGPHVENTKDINP- 116

Query: 709 YIVSESSIRAGIRR 722
             +   S+     R
Sbjct: 117 KAIELESVAGAYWR 130


>gi|217031884|ref|ZP_03437386.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298736935|ref|YP_003729465.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
 gi|216946353|gb|EEC24958.1| hypothetical protein HPB128_3g3 [Helicobacter pylori B128]
 gi|298356129|emb|CBI67001.1| threonyl-tRNA synthetase [Helicobacter pylori B8]
          Length = 612

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   S  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTSSKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    + RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 SKLAITKETLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 168 LNHFKLTKLAG 178


>gi|57506155|ref|ZP_00372076.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
 gi|57015550|gb|EAL52343.1| threonyl-tRNA synthetase [Campylobacter upsaliensis RM3195]
          Length = 602

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 18/197 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+ T+        G  I  DG  +D   +  +   +L  IE  + +   
Sbjct: 40  LRHSCAHLMAQAIKTLYPEAKFFVGPVI-EDGFYYDFRVNSKLNEEDLIKIEKKMKEFAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    +++++A+       L  +   ++    V     G     LC G H  +T  
Sbjct: 99  AKLEIQKYTLSKQEALEKFKDDDLKQEVLAKIPSDEVSIYKQGEF-EDLCRGPHAPNTKF 157

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +           RI       A      + E L  +       + ++   +  I 
Sbjct: 158 LRFFKLT----------RI-----AGAYLGGDEKREMLTRIYGTAFADKESLKEYL-HII 201

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE RK        +L+L
Sbjct: 202 EEARKRDHRKLGSELKL 218


>gi|251777990|ref|ZP_04820910.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082305|gb|EES48195.1| threonine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 643

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 102/270 (37%), Gaps = 27/270 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRR 581
           EAG  + +   +I +G+       +    G+        R  +  ++SL + T D Q  +
Sbjct: 15  EAGLSVYEIAKSISEGLA------RNACCGVVNGKVCDLRNKINEDVSLSICTFDSQEGK 68

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                HS +H+L +A+  +        G  IT  G  +D       ++ +L+ +E  +  
Sbjct: 69  DTVR-HSISHVLAYAVKRLFPQTKLAIGPSITT-GFYYDFDKDVAFSAQDLEKLEAEMKK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           II +N  +    + R++A+          +  ND      + +   G  +  LC G HV 
Sbjct: 127 IIKENPSIEKFELPRDEALELMKDEPYKVELINDLGEDEIISFYKIGEFTD-LCAGPHVM 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +   I  + ++      AG           A      +++ L  +     + +  +   +
Sbjct: 186 TLKPIKAIKLIR----SAG-----------AYWKGDEKNKMLTRIYGTAFLKKSELDEYL 230

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           E + EE +K       R+L+L   D +  +
Sbjct: 231 EAV-EEAKKRDHNKLGRELKLFTTDENVGQ 259


>gi|171780136|ref|ZP_02921040.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281484|gb|EDT46919.1| hypothetical protein STRINF_01924 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 697

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 17/236 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +  +    +   E I    AI E G +       +T D+++   
Sbjct: 64  ESGVTTFEIAQSISNSLAKKALAGKFNGELIDTTRAITEDGSIEV-----VTPDHEDALG 118

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HSA HL   A   +        G  I           S  IT  +L  IE+ +  I
Sbjct: 119 ILR-HSAAHLFAQAAKRLFPDLCLGVGPAIENGFYYDTDNKSGQITDEDLPRIEEEMKKI 177

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           + +NLP V + ++ E+A               ++ +    ++V Y  G      LC G H
Sbjct: 178 VKENLPCVRKEISIEEARELFKNDPYKLELIEEHGEDEGGLTV-YTQGEFTD--LCRGPH 234

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           V STG I + +++   ++     R  +      R +     +K K L ++LK  Q 
Sbjct: 235 VPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRVYGTAWFDK-KDLKAYLKQRQE 286


>gi|86137404|ref|ZP_01055981.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
 gi|85825739|gb|EAQ45937.1| threonyl-tRNA synthetase [Roseobacter sp. MED193]
          Length = 648

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDLAHVMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGVIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +  PV T + +R+ A+    A      Y   +       E            LC G H+ 
Sbjct: 133 KRDPVRTEVWDRQRAVDFYTAN--DEPYKVELIEAIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSI-------RAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
            TG++      ++S +         RA ++RI  +  TG+     HL   +E  K 
Sbjct: 191 HTGQLPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLHMLEEAAKR 246


>gi|317013544|gb|ADU80980.1| threonyl-tRNA synthetase [Helicobacter pylori Gambia94/24]
          Length = 612

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   S  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTSSKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
             L +   ++ RE A+       L         +  +  +  GV+       LC G H+ 
Sbjct: 109 LKLAITKEVLTREQALERFKGDELK-----HAVMSKISGDAFGVYKQGEFEDLCKGPHLP 163

Query: 701 STGEIMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +T  +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 164 NTRFLNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|319957838|ref|YP_004169101.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420242|gb|ADV47352.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Nitratifractor
           salsuginis DSM 16511]
          Length = 605

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  +  +G  +D   S+ I   +LK IE  + +++ 
Sbjct: 43  IRHSTAHLMAQAIRELYPDAQFFVGPVVD-EGFYYDFRTSEKIGEEDLKKIEKKMKELVK 101

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           + LP+    +++ +A+       L       +   +V     G     LC G HV +T  
Sbjct: 102 KKLPIEKYEISKAEAVEKFKNDDLKQAVLKNIPSETVSIYRQGDF-EDLCRGPHVPNTRF 160

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +               + G  A        E L  +       + ++  + +++ 
Sbjct: 161 LHNFKLTR-------------VAG--AYLGGDENAEMLTRIYGIAFADKESL-KKWQQMM 204

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE ++        +L+L
Sbjct: 205 EEAKRRDHRKLGTELEL 221


>gi|157414515|ref|YP_001481771.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047019|sp|A8FK07|SYT_CAMJ8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157385479|gb|ABV51794.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747157|gb|ADN90427.1| Threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1]
 gi|315932015|gb|EFV10968.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327]
          Length = 602

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKNLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|15644753|ref|NP_206923.1| threonyl-tRNA synthetase [Helicobacter pylori 26695]
 gi|2501057|sp|P56071|SYT_HELPY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2313207|gb|AAD07192.1| threonyl-tRNA synthetase (thrS) [Helicobacter pylori 26695]
          Length = 612

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   S  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTSSKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    + RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 LKLAITKETLTREQALERFKGDELKHAVMSKIGGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|320528406|ref|ZP_08029568.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
 gi|320131320|gb|EFW23888.1| threonyl-tRNA synthetase [Solobacterium moorei F0204]
          Length = 591

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 24/185 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
            ++NHS  HL+  A+  +        G  +  +G  +D+      I   +L  IE  +  
Sbjct: 11  NTLNHSCAHLMAQAVKHLYPQAKFWVGPVV-EEGFYYDIDLGDDVIRDEDLAKIEKEMKK 69

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
               +  +V + + RE+A+          +Y   +     E     +++      LC G 
Sbjct: 70  CAKADKRIVRQEITREEALEQF----KDDEYKIDLINRMPEGTHISMYTQGDFTDLCRGP 125

Query: 698 HVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           H  ST       ++  S            ++RI  +        L  Q+E    LA    
Sbjct: 126 HTESTKNCRYFKLIKHSGAYWKGDKNNKVLQRIYGVC-------LPTQEELDSHLADLED 178

Query: 751 VSQGN 755
             Q +
Sbjct: 179 AKQRD 183


>gi|85059397|ref|YP_455099.1| threonyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans']
 gi|123738953|sp|Q2NT31|SYT_SODGM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84779917|dbj|BAE74694.1| threonyl-tRNA synthase [Sodalis glossinidius str. 'morsitans']
          Length = 642

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +        G  I   G  +D+     +T  +L  +E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWPQTKMAIGPVID-KGFYYDLDLDHTLTQDDLDLLEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+   ++ + A  +  A   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKEKVSWQQARDAFVAR--GEDYKVAILDENIRRDDRPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSESS 715
            +        +   S 
Sbjct: 188 PNMRFCHHFTLQKTSG 203


>gi|302381720|ref|YP_003817543.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192348|gb|ADK99919.1| threonyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264]
          Length = 639

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +L T  S  L +        +I H   H+L  A+ T+        G  I  DG  +D   
Sbjct: 50  VLETGGSFRLIMRDDPEALYTIRHDTAHVLAEAVQTLFPGTQVTIGPAI-EDGFYYDFFR 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P ++ +  +IE  ++ I+ ++      + +R++AI    A   G K+   +       
Sbjct: 109 ETPFSTDDFAAIEKEMSRIVDRDAKFEREVWDRDEAITFFEAK--GEKFKAELIRDLPGD 166

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +   ++       LC G H  ST  +        + +     R
Sbjct: 167 QTITLYKQGDWIDLCRGPHFPSTKSVG--KAFKLTKLAGAYWR 207


>gi|167752344|ref|ZP_02424471.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
 gi|167660585|gb|EDS04715.1| hypothetical protein ALIPUT_00588 [Alistipes putredinis DSM 17216]
          Length = 651

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 81/206 (39%), Gaps = 30/206 (14%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+++HLL  AL  +        G  I  +G  +DV    PIT A+L++IE  + ++
Sbjct: 69  HAFWHTSSHLLAEALEALYPGIKFGIGPAI-ENGFYYDVDSPVPITEADLETIEKKMIEL 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCG 695
                 ++   +++ DA+ +        K  D  +V  +   + G  S       + LC 
Sbjct: 128 SRNKEQLIRTEVSKADALKN-----FTEK-GDPYKVELIRDLEDGTISFYTNGAFTDLCR 181

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G H+ +     L+  +  +S+     R               +++ L  +       + +
Sbjct: 182 GPHLPN---TGLIKAIKLTSVAGAYWR------------GNEKNKMLTRIYGI-SFPKKS 225

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
           ++     + EE +K       ++L+L
Sbjct: 226 MLDEYLAMMEEAKKRDHRKLGKELEL 251


>gi|172036410|ref|YP_001802911.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171697864|gb|ACB50845.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 666

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 34/177 (19%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           +D   ++ + I H+  H+L  A+ T+        G   T  G  +D     P T  ++K 
Sbjct: 60  LDKDRQQLVKIRHTCAHVLGMAVQTLFPETKVTIGPW-TETGFYYDFDRLTPFTPEDMKK 118

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----- 689
           IE  +  II  NLP++  +++R  A      A L   Y   +     E E    +     
Sbjct: 119 IEGEMRRIIKANLPIIREVVDR--AEIQTEIAELNEPYKLEILESIPETESITRYFIGSP 176

Query: 690 -------------------------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                                       LC G H++ TGEI      +  S+     
Sbjct: 177 DGGRGNIPEQQPSLINPVLVPPDTCWWDLCAGPHLNFTGEIHP-EAFALESVAGAYW 232


>gi|169840210|ref|ZP_02873398.1| alanyl-tRNA synthetase [candidate division TM7 single-cell isolate
           TM7a]
          Length = 72

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889
           +++E K ++   V         A +  + +A++L GG GGG+   A +GG N    + A+
Sbjct: 3   VNEEGKIALAAGVKNTP---LKAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDAV 58

Query: 890 AGVASFLK 897
                F K
Sbjct: 59  RQALEFAK 66


>gi|158334707|ref|YP_001515879.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158304948|gb|ABW26565.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 606

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 15/193 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+ +H++  A+  +        G  I   G  +D     P T  +LK+I+  +  II 
Sbjct: 28  IRHTTSHVMAMAVQKLFPDAQVTIGPWI-ESGFYYDFDSPTPFTDKDLKAIKKEMVKIIK 86

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVSS 701
           + LPV    ++RE+A        LG  Y   +       +     G     LC G HV S
Sbjct: 87  KKLPVEREEVSREEAKKR--IKALGEPYKLEILEDLEDPITLYHLGDQWWDLCAGPHVES 144

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T ++     ++  S+     R     G   ++ L             L     +   + E
Sbjct: 145 TADLNP-KAIALESVAGAYWR-----GDETKAQLQRIYGTAWETPEQL---AEHKRRKEE 195

Query: 762 EIWEEYRKLQLIH 774
            +  ++RKL    
Sbjct: 196 ALRRDHRKLGKEL 208


>gi|28493229|ref|NP_787390.1| threonyl-tRNA synthetase [Tropheryma whipplei str. Twist]
 gi|73919842|sp|Q83GK5|SYT_TROWT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|28476270|gb|AAO44359.1| threonyl-tRNA synthetase [Tropheryma whipplei str. Twist]
          Length = 640

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 7/138 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+ +I G      G   T +G  +D + ++P +S  L+ IED + +I+ 
Sbjct: 49  LRHSCAHVLAQAVQSIYGDAKLGIGPF-TENGFYYDFSVNEPFSSDSLRVIEDKMREIVH 107

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEY----EDGGVHSSALCGGTHV 699
            +   V ++++R+ A +            N     +S+ Y    + G V     C G H+
Sbjct: 108 SDQKFVRKVVDRQSAHSQFRDEPFKLEIINATDDTLSIYYNIDADSGSVRWMDFCRGPHL 167

Query: 700 SSTGEIM-LLYIVSESSI 716
            ST  I     +   SS+
Sbjct: 168 PSTRFIGDAFALTHVSSV 185


>gi|83951679|ref|ZP_00960411.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
 gi|83836685|gb|EAP75982.1| threonyl-tRNA synthetase [Roseovarius nubinhibens ISM]
          Length = 648

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  +G  +D   ++P T  +L  IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQELWPDVKVTIGPVI-ENGWYYDFDRAEPFTPEDLGEIEKKMREIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T I +R  A+        G  +   +       E            LC G H+ 
Sbjct: 133 KRDEVRTEIWDRARAVKHYEDN--GEPFKVELIEAIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSES-------SIRAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
            TG++      ++S +       S R  ++RI  +  TG+     HL   +E  K 
Sbjct: 191 HTGQVPADAFKLMSVAGAYWRGDSSRQMLQRIYGVAFTGKEKLKAHLHMLEEAAKR 246


>gi|288802831|ref|ZP_06408268.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
 gi|288334648|gb|EFC73086.1| threonine--tRNA ligase [Prevotella melaninogenica D18]
          Length = 649

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 18/177 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +  +G  +DV  ++   I+  +   IE+ + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ENGFFYDVMPAEGQTISENDFPKIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N PVV R +++ DA+    A   G +Y     V  +E      +S      LC G
Sbjct: 128 ELAKKNEPVVRRNVSKADAVKEFTAD--GQEYKVEHIVEDLEDGTISTYSQGNFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
            H+ STG I  + I S +         R  + RI  IT   ++     +   E+ K 
Sbjct: 186 PHLVSTGAIKAVKITSVAGAFWRGDAKREQMTRIYGITFPKKKMLDEYLEMLEEAKK 242


>gi|320547252|ref|ZP_08041545.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
 gi|320448140|gb|EFW88890.1| threonine--tRNA ligase [Streptococcus equinus ATCC 9812]
          Length = 697

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 86/236 (36%), Gaps = 17/236 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 64  ESGVTTFEIAQSISNSLA------KKALAGKFNGELIDTTREITEDGSIEVVTPDHEDAL 117

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           S  IT  +L  IE+ +  I
Sbjct: 118 SVLRHSAAHLFAQAAKRLFPDLCLGVGPAIENGFYYDTDNKSGQITDEDLPRIEEEMKKI 177

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           + +NLP V + ++ E+A               ++ +    ++V Y  G      LC G H
Sbjct: 178 VKENLPCVRKEISIEEARELFKNDPYKLELIEEHGEDEGGLTV-YTQGEFTD--LCRGPH 234

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           V STG I + +++   ++     R  +      R +     +K K L ++LK  Q 
Sbjct: 235 VPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRVYGTAWFDK-KDLKAYLKQRQE 286


>gi|163795474|ref|ZP_02189441.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
 gi|159179460|gb|EDP63991.1| Threonyl-tRNA synthetase [alpha proteobacterium BAL199]
          Length = 640

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 11/143 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  +G  +D   + P T  +L +IE  ++DI+ 
Sbjct: 71  IRHDCAHVMAEAVLELYPDAQVTIGPSI-ENGFYYDFHRATPFTPDDLVAIEKRMHDIVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ P+      RE AIA          +   +     E E    +       LC G H  
Sbjct: 130 RDEPITREEWTREQAIAHYKTT--DEPFKVELAEAIPEGEIISFYRQGNFLDLCRGPHGP 187

Query: 701 STGEIML-LYIVSESSIRAGIRR 722
           ST  I     ++    +     R
Sbjct: 188 STKTIGHAFKLMK---VAGAYWR 207


>gi|254167926|ref|ZP_04874775.1| hypothetical protein ABOONEI_1568 [Aciduliprofundum boonei T469]
 gi|289596616|ref|YP_003483312.1| partial alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
 gi|197623217|gb|EDY35783.1| hypothetical protein ABOONEI_1568 [Aciduliprofundum boonei T469]
 gi|289534403|gb|ADD08750.1| partial alanyl-tRNA synthetase [Aciduliprofundum boonei T469]
          Length = 148

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+L  A+  +LG+        ++ +  R  V + +  +  E+K IE+  N+ I 
Sbjct: 5   KTHTALHILKGAVVKVLGAK-WTASVYVSGNHGRLTVKYHRKPSQDEMKRIEELANEKIG 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+    + R+ A       +       D V+ + +   D    +   C   H +STG
Sbjct: 64  ENVPIKILTLPRDKAEEMFGEDIYDLFPIPDNVKTLKIVVIDN--WNVNACNKEHTNSTG 121

Query: 704 EIMLLYIVSE 713
           E+  + I   
Sbjct: 122 EVGKIKITKW 131


>gi|260888481|ref|ZP_05899744.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|330838210|ref|YP_004412790.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
 gi|260861678|gb|EEX76178.1| threonine--tRNA ligase [Selenomonas sputigena ATCC 35185]
 gi|329745974|gb|AEB99330.1| threonyl-tRNA synthetase [Selenomonas sputigena ATCC 35185]
          Length = 593

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 2/176 (1%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
                 HS  H+L  A+  + G            DG  +D    +  T+ +LK+IE+ + 
Sbjct: 6   FLHVYRHSLAHVLAKAVIEVFGKETQYAIGPEIADGFYYDFLLPRAATNDDLKTIEEKMK 65

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +I+ +        ++++DA+          +   D      +     G     LC G HV
Sbjct: 66  EILKRKEDWKREEISKKDALELFKNQKFKVELIEDLPDDEILTTYRTGDDFVDLCRGPHV 125

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQG 754
            ++  ++ +     S   +  R  E      R  ++     E+LK+  +F+K +Q 
Sbjct: 126 ENSAALLSVAWQLRSMSGSYWRGDEKRDQLTRIYAYAFPTKEELKAHLAFIKDAQE 181


>gi|315639344|ref|ZP_07894506.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
 gi|315480670|gb|EFU71312.1| threonine--tRNA ligase [Campylobacter upsaliensis JV21]
          Length = 602

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 18/197 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +        G  I  DG  +D   +  +   +L  IE  + +   
Sbjct: 40  LRHSCAHLMAQAIKALYPEAKFFVGPVI-EDGFYYDFRVNSKLNEEDLIKIEKKMKEFAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    +++++A+       L  +   ++    V     G     LC G H  +T  
Sbjct: 99  AKLEIQKYTLSKQEALEKFKDDDLKQEVLAKIPSDEVSIYKQGEF-EDLCRGPHAPNTKF 157

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +           RI       A      + E L  +       + ++   +  I 
Sbjct: 158 LRFFKLT----------RI-----AGAYLGGDEKREMLTRIYGTAFADKESLKEYL-HII 201

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE +K        +L+L
Sbjct: 202 EEAKKRDHRKLGNELKL 218


>gi|163737374|ref|ZP_02144791.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
 gi|161388900|gb|EDQ13252.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis BS107]
          Length = 648

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHVMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGTIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T +  R+ AI       L   Y   +       E            LC G H+ 
Sbjct: 133 KRDEVRTEVWERDRAIQHYTD--LNEPYKVELIESIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSI-------RAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
            TG++      ++S +         RA ++RI  +  TG+     HL   +E  K 
Sbjct: 191 HTGQLPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLHMLEEAAKR 246


>gi|159899369|ref|YP_001545616.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892408|gb|ABX05488.1| threonyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 604

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 15/155 (9%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++  N     + HS  H+L  A+  I        G  +  +G  +D    +P+T  +LK 
Sbjct: 4   VNPDNDPLYRLRHSTAHVLAQAVLEIFPEGKIAIGPPV-ENGFYYDFDLPRPLTPDDLKD 62

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASG-----------AAALLGTKYNDRVRVVSVEY 683
           IE  +  II        R ++ ++A                 A    +Y ++        
Sbjct: 63  IEAKMRKIIKAKHRFAYREVSADEARELFKNQPYKLELIAGLAKGEDEYGEKAAASDTII 122

Query: 684 EDGGVHSSA-LCGGTHVSSTGEIML--LYIVSESS 715
                 S   LC G HV S G+I      ++  S 
Sbjct: 123 STYKHDSFEDLCKGPHVESLGDIPPNGFKLLRVSG 157


>gi|25272025|gb|AAN74749.1| CmaT [Pseudomonas syringae pv. actinidiae]
          Length = 457

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
             ++VV   T F+AE GGQ  D GC      R+++T  +           + E       
Sbjct: 274 DGLDVVISPTIFFAEYGGQESDKGCIN----RIEVTRPRLLTSA--SSIGLAEDPDFAVG 327

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
             + + ID+  R  L   H A   L  +        + + G+ I     R D +    ++
Sbjct: 328 DLVSVEIDWPRRYALMRLHFAAVKLCWS----KFPDLEKIGAHIGQHKARIDFSLEGNVS 383

Query: 629 ---SAELKSIEDNVNDI 642
                 L+ +E  V   
Sbjct: 384 QYFPEILQGVEHLVAAY 400


>gi|189195352|ref|XP_001934014.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979893|gb|EDU46519.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 209

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 13/191 (6%)

Query: 540 RLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
              ++ V+    G  +H               L   I+   R   S  H+A H++  A++
Sbjct: 18  TFTVSQVRSLPTGAILHMGFFPSSSPFTPPTHLRQAINIPLRTLHSRLHTAGHVIGLAVN 77

Query: 599 TIL-----GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
           T++      + ++ + +   P+      T S P T A   +I+  V++++AQ+LPV    
Sbjct: 78  TLIQRGDLPNTIADSKASHYPNAAYVTFTGSIPSTLA--PTIQSTVDEMVAQDLPVSIFF 135

Query: 654 MNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
            + + A         G +   D + V  VE    G +    CGGTHV   GE+  + +  
Sbjct: 136 WDEDRARRECYGVGDGAELKGDEMGVRVVEMGGKGSY---PCGGTHVERLGELARVVVKG 192

Query: 713 ESSIRAGIRRI 723
                 G+ RI
Sbjct: 193 VKR-SKGVSRI 202


>gi|229085293|ref|ZP_04217535.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
 gi|228698012|gb|EEL50755.1| Threonyl-tRNA synthetase [Bacillus cereus Rock3-44]
          Length = 642

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 11/174 (6%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V  K  G          G  + +   ++T+D     +++  H++ H+L  A+  I G  V
Sbjct: 40  VAGKVNGQVFDLRRNIEGNAKVQ---IITMDSAEGVEIAR-HTSAHILAQAVKRIYGD-V 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                 +  +G  +D+     I   +L  I + + +I+ +NL +    + R++A      
Sbjct: 95  KFGIGPVIENGFYYDMDLPNSIAVEDLPKIGNEMQNIVNENLKIERVEITRKEAEELFQD 154

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             +       +     E E   ++       LC G H+ STG +    +   S 
Sbjct: 155 --VNDHLKLELLEAIPEGEVVTIYKQGEFVDLCRGPHLPSTGYLKAFRLTHVSG 206


>gi|193211793|ref|YP_001997746.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085270|gb|ACF10546.1| threonyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 661

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 18/155 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+ HA+  +        G  I   G  +D+         +L++IE  + +I  +N
Sbjct: 86  HSSSHLMAHAIEELFPGAKFGAGPAI-EQGFYYDIACEHRFNEDDLRAIEAKMLEISQRN 144

Query: 647 LPVVTRIMNREDAIASGAAALLG-------TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           L +    M RE AI   A                  V  VSV Y+DG    + LC G H+
Sbjct: 145 LSITREEMPREQAIEYFANERKDPYKVEILEDTLKEVPTVSVYYQDG---FADLCSGPHL 201

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAIT 727
            STG++  + + + S       S R  ++RI  IT
Sbjct: 202 PSTGKVKAVLLTNISSSYWRGDSSRETMQRIYGIT 236


>gi|322371434|ref|ZP_08045983.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
 gi|320548966|gb|EFW90631.1| threonyl-tRNA synthetase [Haladaptatus paucihalophilus DX253]
          Length = 645

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H+L  A+S +        G   T +G  +D      I   +L  IE  + DI++
Sbjct: 78  LRHSAAHVLAQAVSRLFPDAKLAIGPP-TDEGFYYDFDGL-DIDEDDLADIEAEMRDIVS 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
            +  +V   ++ E+A    A      +  D +                LC G HV+STGE
Sbjct: 136 ADYDIVREEVSPEEARERLADQPYKLELLDDIAADEPVTFYRQGEFEDLCAGPHVASTGE 195

Query: 705 IMLLYIVSESSIRAGIRR 722
           +  L ++    I     R
Sbjct: 196 VGALSLLE---IAGAYWR 210


>gi|21909901|ref|NP_664169.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28896400|ref|NP_802750.1| threonyl-tRNA synthetase [Streptococcus pyogenes SSI-1]
 gi|25453285|sp|Q8K8C0|SYT_STRP3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21904088|gb|AAM78972.1| putative threonyl-tRNA synthetase [Streptococcus pyogenes MGAS315]
 gi|28811651|dbj|BAC64583.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes SSI-1]
          Length = 647

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESISKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNTEGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|163740958|ref|ZP_02148351.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
 gi|161385949|gb|EDQ10325.1| threonyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10]
          Length = 648

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHVMARAVQDIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGTIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T + +R+ AI       L   Y   +       E            LC G H+ 
Sbjct: 133 KRDAVRTEVWDRDRAIQHYTD--LNEPYKVELIESIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSI-------RAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
            TG++      ++S +         RA ++RI  +  TG+     HL   +E  K 
Sbjct: 191 HTGQLPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLHMLEEAAKR 246


>gi|119963884|ref|YP_948047.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
 gi|166223318|sp|A1R735|SYT_ARTAT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119950743|gb|ABM09654.1| threonyl-tRNA synthetase [Arthrobacter aurescens TC1]
          Length = 669

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 47/237 (19%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +   + +   V G++ +V           G    +      D +  ++  V K  + +  
Sbjct: 1   MSDAQQITLIVDGEETKV---------TEGTTGAELFFERRDVVVARVNGVLKDLDQV-- 49

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
                    L     +             + HS  H++  A+  +        G  IT D
Sbjct: 50  ---------LTEGADVEGVTIDSPDGLNVLRHSTAHVMAQAVQQLRPEAKLGIGPYIT-D 99

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGT 670
           G  FD   + P T  +L+++E  +  II QN   V R++  E+A  + A       LLG 
Sbjct: 100 GFYFDFDVADPFTPEDLRTLEKMMQKIINQNQKFVRRVVTEEEAREAMANEPYKLELLGK 159

Query: 671 K---------------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
           K                 D     +V+ + G      LC G H+ +T       I+S
Sbjct: 160 KNDASDAAEGVNVEVGAGDITIYDNVDRKSGESIWCDLCRGPHLQNT------KIIS 210


>gi|237752912|ref|ZP_04583392.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375179|gb|EEO25270.1| threonyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430]
          Length = 605

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+  HL+  AL  +        G  +  +G  +D   +  I+  +L  IE  + +I  
Sbjct: 41  MRHTCAHLMAEALKALYPEAQFFVGPVV-EEGFYYDFRVNHKISEEDLSKIEAKMKEIAK 99

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTH 698
           +   +    + RE+AI       L      +  +  +   DG +          LC G H
Sbjct: 100 KGEKITKYYLTREEAIQKFQNDDLK-----QAVISRIPLGDGRLSIYAQGEFEDLCRGPH 154

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           + +   +    +               + G  A      + E L  +       + ++  
Sbjct: 155 LPTLKLLNAFKLTK-------------VAG--AYLGGDEKAEMLTRIYGIAFADKESLTQ 199

Query: 759 RVEEIWEEYRK 769
            + ++ E  ++
Sbjct: 200 YLHQLEEAKKR 210


>gi|283955645|ref|ZP_06373138.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792870|gb|EFC31646.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 602

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|157147555|ref|YP_001454874.1| hypothetical protein CKO_03355 [Citrobacter koseri ATCC BAA-895]
 gi|157084760|gb|ABV14438.1| hypothetical protein CKO_03355 [Citrobacter koseri ATCC BAA-895]
          Length = 185

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 60/202 (29%), Gaps = 40/202 (19%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570
             V  D+T F+ + GGQ  D G        + +  +  +   I      +    +   + 
Sbjct: 5   YAVTLDKTLFHPQGGGQPADKGWI----ADIPVCGIMLRDNQIIH----ILPQPVAAGV- 55

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           + L +D Q R   S  HSA H L        G    +         + F       +  A
Sbjct: 56  VQLKVDAQTRLLNSRLHSAGH-LIGCAGETWGWSPVKAHHWPGEGRITFSAGEHARLPDA 114

Query: 631 E--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           E  L  IE                      A             +   R V       G 
Sbjct: 115 ENLLACIEQW-------------------QAKDYARRIEF----DGERRKVGF-----GE 146

Query: 689 HSSALCGGTHVSSTGEIMLLYI 710
                CGGTHV+S G++  + I
Sbjct: 147 LPMYFCGGTHVTSLGQLGRIMI 168


>gi|110679173|ref|YP_682180.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
 gi|123362019|sp|Q168U9|SYT_ROSDO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109455289|gb|ABG31494.1| threonyl-tRNA synthetase [Roseobacter denitrificans OCh 114]
          Length = 648

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 16/211 (7%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV---HHAIVERGILRTEMSLVLTIDY 577
           + +   +  D G   GD      T ++KKA    V   H+ +         +++    D 
Sbjct: 8   FPDGSTREFDAGVTAGDVAASISTSLRKKAISATVGGAHYDLAWPIHADATIAIHTMQDE 67

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           +   +L   H   H++  A+  I        G  I  DG  +D   ++  +  +L  IE 
Sbjct: 68  EQANELVR-HDLAHIMARAVQEIWPETKVTIGPVI-KDGWYYDFDRAEAFSPEDLGLIEK 125

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSAL 693
            + +II +  PV T + +R  AIA   A      Y   +       E            L
Sbjct: 126 KMKEIINKRDPVRTEVWDRARAIAHYEAN--DEPYKVELINAIPGDEPLRMYWHGDWQDL 183

Query: 694 CGGTHVSSTGEI--MLLYIVSESSIRAGIRR 722
           C G H+  TG++      ++S   I     R
Sbjct: 184 CRGPHLQHTGQVPGDAFKLMS---IAGAYWR 211


>gi|303233025|ref|ZP_07319704.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
 gi|302480896|gb|EFL43977.1| threonine--tRNA ligase [Atopobium vaginae PB189-T1-4]
          Length = 589

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 25/193 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +I HS  HLL  A+  +  +     G   T +G  +D++  +   I+  +L +IE  + 
Sbjct: 20  HTIRHSCAHLLAQAVKRLYPNTHFAYGPA-TENGFYYDMSFGEGVKISEDDLPAIEAEMK 78

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I  +NL V T  + R +AIA       G ++         E      +       +C G
Sbjct: 79  KIAKENLKVETFELPRAEAIAFLNER--GERFKVEHIADFPESTRLTFYKQGEYVDMCTG 136

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            HV  T ++    +   S                A       +E L  ++     ++  +
Sbjct: 137 PHVCYTSKLRAFKLTGISG---------------AYWKANSDNEMLTRISGVAFDTKEEL 181

Query: 757 VGRVEEIWEEYRK 769
               E +  E  K
Sbjct: 182 AE-YERLIAEAEK 193


>gi|71903081|ref|YP_279884.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
 gi|123734122|sp|Q48US7|SYT_STRPM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71802176|gb|AAX71529.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS6180]
          Length = 647

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESISKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNAEGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|297588366|ref|ZP_06947009.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
 gi|297573739|gb|EFH92460.1| threonine--tRNA ligase [Finegoldia magna ATCC 53516]
          Length = 634

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++HL+ +A+  +  +     G  I   G  +D+         +L+ IE  +  I+ +N
Sbjct: 73  HTSSHLMAYAIQRLYPNTKFAIGPSID-SGFYYDLDTDHKFVPEDLEKIEAEMKKIVKEN 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGGTH 698
             +V   ++RE+A+          K     +V  +E  D               LC G H
Sbjct: 132 PKLVRVEISREEALERF------KKEGQDYKVDLIENLDEDATITLYEMGDFVDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           +     I    ++S   I     R
Sbjct: 186 LLEVKNIKAFKLLS---IAGAYWR 206


>gi|242399573|ref|YP_002994998.1| alanyl-tRNA synthetase-like protein [Thermococcus sibiricus MM 739]
 gi|242265967|gb|ACS90649.1| alanyl-tRNA synthetase-like protein [Thermococcus sibiricus MM 739]
          Length = 148

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGS-CITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H+L  A+  +LG       +  +  +  R  +  ++  T  E+  IE+  N  I
Sbjct: 4   KTHTALHVLKGAVVKVLGEEAKWTAAVYVNGNHGRLTIKFNRKPTKEEIAMIEEFANRKI 63

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N P+    + RE+A +     +    +     + +++       +   C   H  +TG
Sbjct: 64  EENAPIKVHELPREEAESRFGEDMYDL-FPIPEEIRTLKVVVIEDWNINACNKEHTKTTG 122

Query: 704 EIMLLYIVS 712
           EI  + I  
Sbjct: 123 EIGQIKIRK 131


>gi|154495989|ref|ZP_02034685.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
 gi|150274872|gb|EDN01928.1| hypothetical protein BACCAP_00272 [Bacteroides capillosus ATCC
           29799]
          Length = 586

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 20/201 (9%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ +H+L  A+  +        G  I  +G  +D+    P T   L+ IE  + 
Sbjct: 15  YRKTYWHTCSHILAQAVKRLYPEVKLAIGPSID-EGFYYDMDSPFPFTPEILEQIEAEMR 73

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I  + L +    + RE+AI        G  +   +     E      +       LC G
Sbjct: 74  KICKEKLKLERFELPREEAIKF--MEEKGEPFKVELINDLPEDAHISFYKQGEFTDLCAG 131

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            H+            S   ++    ++ A     A        E L+ +       +  +
Sbjct: 132 PHLD-----------STGRVKGNAIKLTAC--NAAYWRGDSNRETLQRIYGIAFPKKEEL 178

Query: 757 VGRVEEIWEEYRKLQLIHAKR 777
              ++ I E  ++      K 
Sbjct: 179 DAYLQRIEEAKKRDHRKLGKE 199


>gi|258512139|ref|YP_003185573.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478865|gb|ACV59184.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 648

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 19/146 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+  H++  A+  +        G  I  +G  +D          +L  IE+ +  IIA
Sbjct: 74  MRHTCAHVMAQAVQRLFPGTKCAIGPVI-ENGFYYDFADH-DFHPEDLPRIEEEMKRIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGG 696
           ++LP+   +++RE+A+             DR +V  +E     V            LC G
Sbjct: 132 EDLPIHREVVSREEAL------RFFRDRGDRFKVEIIEDLPEDVTLTLYRQGEFVDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            H+ S      + +    +      R
Sbjct: 186 PHLPS---TGRIKVFQLQNFAGAYWR 208


>gi|218288925|ref|ZP_03493176.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218241014|gb|EED08191.1| threonyl-tRNA synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 648

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 19/146 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+  H++  A+  +        G  I  +G  +D          +L  IE+ +  IIA
Sbjct: 74  MRHTCAHVMAQAVQRLFPGTKCAIGPVI-ENGFYYDFADH-DFHPEDLPRIEEEMKRIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV--------HSSALCGG 696
           ++LP+   +++RE+A+             DR +V  +E     V            LC G
Sbjct: 132 EDLPIHREVVSREEAL------RFFRDRGDRFKVEIIEDLPVDVTLTLYRQGEFVDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            H+ S      + +    +      R
Sbjct: 186 PHLPS---TGRIKVFQLQNFAGAYWR 208


>gi|15674621|ref|NP_268795.1| threonyl-tRNA synthetase [Streptococcus pyogenes M1 GAS]
 gi|71910240|ref|YP_281790.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
 gi|22654136|sp|Q9A115|SYT_STRP1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|13621733|gb|AAK33516.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes M1 GAS]
 gi|71853022|gb|AAZ51045.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS5005]
          Length = 647

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESISKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNAEGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|210134324|ref|YP_002300763.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
 gi|238065114|sp|B6JPM2|SYT_HELP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|210132292|gb|ACJ07283.1| threonyl-tRNA synthetase [Helicobacter pylori P12]
          Length = 612

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    + RE A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 LKLAITKETLTREQALERFKGDELKHAVMSKISGDAFGVYQQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|284166054|ref|YP_003404333.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
 gi|284015709|gb|ADB61660.1| threonyl-tRNA synthetase [Haloterrigena turkmenica DSM 5511]
          Length = 649

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 12/168 (7%)

Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618
           + +   +   + L +  D        + HSA H L  A+       V       T +G  
Sbjct: 55  VAKEEPVYDGVELEIVTDGSEEYLEVMRHSAAHCLAQAVER-HYDDVDLAIGPPTDEGFY 113

Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYND 674
           +D   +  +   +L ++ED +  IIA++  +    ++ E+A    A          ++ D
Sbjct: 114 YDFD-NLDVDEEDLAALEDEIEAIIAEDYEIEREDVSIEEAEERLAGEPYKLELLEEFAD 172

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               V+  Y+ G      LC G HV STGEI ++ ++    I     R
Sbjct: 173 ENDTVTF-YKQGEWED--LCAGPHVDSTGEIGVVELLE---IAGAYWR 214


>gi|209558991|ref|YP_002285463.1| threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
 gi|238065119|sp|B5XKA6|SYT_STRPZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|209540192|gb|ACI60768.1| Threonyl-tRNA synthetase [Streptococcus pyogenes NZ131]
          Length = 647

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESISKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNAEGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|94993836|ref|YP_601934.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
 gi|123080137|sp|Q1J7X1|SYT_STRPF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94547344|gb|ABF37390.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10750]
          Length = 647

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESISKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNAEGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|19745635|ref|NP_606771.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS8232]
 gi|94988057|ref|YP_596158.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94991943|ref|YP_600042.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|139474254|ref|YP_001128970.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|306827837|ref|ZP_07461106.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
 gi|25453286|sp|Q8P234|SYT_STRP8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123080426|sp|Q1JMY5|SYT_STRPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123382336|sp|Q1JD10|SYT_STRPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225506|sp|A2RFY5|SYT_STRPG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19747765|gb|AAL97270.1| putative threonyl-tRNA synthetase 1 [Streptococcus pyogenes
           MGAS8232]
 gi|94541565|gb|ABF31614.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS9429]
 gi|94545451|gb|ABF35498.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS2096]
 gi|134272501|emb|CAM30764.1| threonyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo]
 gi|304429946|gb|EFM32986.1| threonine--tRNA ligase [Streptococcus pyogenes ATCC 10782]
          Length = 647

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESISKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNAEGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|188588550|ref|YP_001919768.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|238689641|sp|B2UYW3|SYT_CLOBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188498831|gb|ACD51967.1| threonyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 643

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 100/270 (37%), Gaps = 27/270 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRR 581
           EAG  + +   +I +G+       +    G+        R  +  ++SL + T D Q  +
Sbjct: 15  EAGLSVYEIAKSISEGLA------RNACCGVVNGKVCDLRNKINEDVSLSICTFDSQEGK 68

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                HS +H+L +A+  +        G  I   G  +D       ++ +L+ +E  +  
Sbjct: 69  DAVR-HSISHVLAYAVKRLFPQTKLAIGPSIAT-GFYYDFDKDVAFSAQDLEKLEAEMKK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           II +N  +    + R++A+          +  ND      + +   G  +  LC G HV 
Sbjct: 127 IIKENPSIEKFELPRDEALELMKDEPYKVELINDLGEDEIISFYKIGEFTD-LCAGPHVM 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   I  L +       AG           A      +++ L  +     + +  +   +
Sbjct: 186 SLKPIKALKLTR----SAG-----------AYWKGDEKNKMLTRIYGTAFLKKSELDEYL 230

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           E I EE +K       R+L+L   D +  +
Sbjct: 231 EAI-EEAKKRDHNKLGRELKLFTTDENVGQ 259


>gi|320333471|ref|YP_004170182.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
 gi|319754760|gb|ADV66517.1| threonyl-tRNA synthetase [Deinococcus maricopensis DSM 21211]
          Length = 649

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 31/208 (14%)

Query: 585 INHSATHLLHHA---LSTILGSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDN 638
             HS  H++  A        G         + P   +G   D    +P+   +L  IE  
Sbjct: 71  FRHSLGHVMSQAVGEFYRAKGHPADAVKRGVGPSIENGWYQDFDLPEPLREEDLPEIERI 130

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALC 694
           + +I+++NL    R +++ +A+A       G  Y   +     + E    ++      LC
Sbjct: 131 MREILSRNLDFSRREVSKAEALAQFG----GDPYKAELIRELPDDEPITFYTQGDYTDLC 186

Query: 695 GGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            G H   TG +     ++S S                A      ++  L+ +      +Q
Sbjct: 187 RGPHFPRTGALPGAFKLMSTSG---------------AYWRGNEKNPILQRIYGVAFATQ 231

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             +   +  + EE +K       R+L+L
Sbjct: 232 KELDEYLHRL-EEAKKRDHRKLGRELEL 258


>gi|111023830|ref|YP_706802.1| threonyl-tRNA synthetase [Rhodococcus jostii RHA1]
 gi|123339593|sp|Q0S1E2|SYT_RHOSR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110823360|gb|ABG98644.1| threonine--tRNA ligase [Rhodococcus jostii RHA1]
          Length = 685

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 77/234 (32%), Gaps = 38/234 (16%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +  V + AEG     + V    +  E  +    D        I HSA H+L  A+    
Sbjct: 36  DVVVVVRDAEGQLKDLSWVPDTDVEVE-PVAANTDDGR---SVIRHSAAHVLAQAVQQEF 91

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN------ 655
                  G  I  DG  +D    +P T  +L S+E  +  II  +     R++       
Sbjct: 92  PEAKLGIGPPI-KDGFYYDFAVDRPFTPEDLASLEKRMKKIIKGSQRFSRRVVESLEDAR 150

Query: 656 REDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSS-----------ALCGGTHVSSTG 703
            E A       L+  K   D   ++ V   +  ++ +            LC G H+ +T 
Sbjct: 151 AELAKEPFKLELIDDKSGIDDPEIMEVGGNELTIYDNLDPRTGEKVWGDLCRGPHIPTTK 210

Query: 704 EIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMGQDEKLKSLASF 748
            I    +    S  A  R         RI       A      QD+ L+ LA  
Sbjct: 211 HIPAFKLTR--SSAAYWRGNQDNADLQRIYGT----AWESAEAQDQHLELLAEA 258


>gi|223938078|ref|ZP_03629976.1| threonyl-tRNA synthetase [bacterium Ellin514]
 gi|223893292|gb|EEF59755.1| threonyl-tRNA synthetase [bacterium Ellin514]
          Length = 618

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  H+L  A+  +        G  +  +G  +DV  S  I+  + + IE  +      
Sbjct: 25  RHSCAHVLATAILRLWPDAQFAAGPPV-ENGFYYDVELSHRISPEDFEKIEAEMKKETKA 83

Query: 646 NLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----EYEDGGVHSS----AL 693
           N      ++ RE AI     G  A LG +       + +     E E    + +     L
Sbjct: 84  NNTFEKVVVTREQAIKDAQTGRLAALGERGTPSKFKLDIVQNIPENEPISYYKNGDFLDL 143

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G HV  TG I    +   +S
Sbjct: 144 CAGPHVMRTGNIGAFKLTHVAS 165


>gi|187932904|ref|YP_001884583.1| threonyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|238691610|sp|B2TIT5|SYT_CLOBB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|187721057|gb|ACD22278.1| threonine--tRNA ligase [Clostridium botulinum B str. Eklund 17B]
          Length = 643

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 103/273 (37%), Gaps = 33/273 (12%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRR 581
           EAG  + +   +I +G+       +    G+        R  ++ ++SL + T D Q  +
Sbjct: 15  EAGLSVYEIAKSISEGLA------RNACCGVVNGKVCDLREEVKEDVSLSICTFDSQEGK 68

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
                HS +H+L +A+  +        G  I   G  +D       ++ +L+ +E  +  
Sbjct: 69  DAVR-HSISHVLAYAVKRLFPETKLAIGPSIAT-GFYYDFDKDVAFSAQDLEKLEAEMKK 126

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           II +N  +    + R +A+          +  ND      + +   G  +  LC G HV 
Sbjct: 127 IIKENPSIEKFELPRNEALELMKDEPYKVELINDLGEDEIISFYKLGEFTD-LCAGPHVM 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL--ASFLKVSQ-GNVV 757
           S   I  + ++      AG           A      +++ L  +   +FLK S+    +
Sbjct: 186 SLKPIKAIKLIR----SAG-----------AYWKGDEKNKMLTRIYGTAFLKKSELDEYL 230

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             V    EE +K       R+L+L   D +  +
Sbjct: 231 DAV----EEAKKRDHNKLGRELKLFTTDENVGQ 259


>gi|254477067|ref|ZP_05090453.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
 gi|214031310|gb|EEB72145.1| threonyl-tRNA synthetase [Ruegeria sp. R11]
          Length = 648

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + DII 
Sbjct: 74  IRHDLAHIMARAVQEIWPDTKVTIGPVID-NGWYYDFDRAEPFTPEDLGAIEKKMKDIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T +  R+ AI           Y   +       E            LC G H+ 
Sbjct: 133 KRDEVRTEVWERDRAIQHYTDN--NEPYKVELIESIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
            TG++      ++S   I     R
Sbjct: 191 HTGQVPGDAFKLMS---IAGAYWR 211


>gi|170781142|ref|YP_001709474.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155710|emb|CAQ00831.1| threonine-tRNA synthetase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 684

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 27/182 (14%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +     +  + ID  +   +   HSA H++  A+  I        G  +T DG  FD  
Sbjct: 55  EVAPGDVVEPVRIDSPDGLAILR-HSAAHVMAQAVQQINPEAKLGIGPPVT-DGFYFDFD 112

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYN---- 673
            ++P T  +LK+I  N+  I+ Q      R+++ E+A    AA      L+G K      
Sbjct: 113 VAEPFTPEDLKAISKNMERIVRQGQRFTRRVVSEEEARELMAAEPYKLELIGLKGGSSDE 172

Query: 674 -------------DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                        +     +V+ + G V    LC G H+ ST  +   + +S   + A  
Sbjct: 173 LGEDGESVEVGGAELTVYENVDGKTGEVFWRDLCRGPHLPSTRMVGNGWALS--RVAAAY 230

Query: 721 RR 722
            R
Sbjct: 231 WR 232


>gi|324528305|gb|ADY48898.1| Alanyl-tRNA synthetase [Ascaris suum]
          Length = 174

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-SEVDSKELKSVM 813
                ++++ ++  +        K+    + L         F+ H+       K L + +
Sbjct: 24  EEAKGIQKLLDKLERDAKAAVTEKVMNEAKQLEGTLNDHTKFIVHVFGKGATGKALDAAL 83

Query: 814 DALQKKIQSGIIMLVGISKE-KKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGR 871
            +L+K   +  +M   +++E  K +++  V +  +     A +      +V+G G GGG+
Sbjct: 84  KSLKK---APAVMGFSVNEETGKVTIVAKVDKASVAAGLKAPEWISKVCEVVG-GRGGGK 139

Query: 872 PHMAQSGGPNGNKADQAIA 890
              AQ+ G   ++  +A+ 
Sbjct: 140 DMQAQATGDRIDRVPEAVQ 158


>gi|325963430|ref|YP_004241336.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469517|gb|ADX73202.1| Ser-tRNA hydrolase; threonyl-tRNA synthetase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 669

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 86/242 (35%), Gaps = 41/242 (16%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +   + +   V G++ +V    T                   G  L           +  
Sbjct: 1   MSDAQQITLLVDGEETKVTTGTT-------------------GAELFFERRDVVVARVNG 41

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
               +++ +        +TID  +   +   HS  H++  A+  +        G  IT D
Sbjct: 42  ELKDLDQELPEGADVEGVTIDSPDGLNVLR-HSTAHVMAQAVQQLRPDAKLGIGPYIT-D 99

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGT 670
           G  FD   ++P T  +LK++E  +  I+ QN   V R+++ E+A  +         LLG 
Sbjct: 100 GFYFDFDVAEPFTPEDLKTLEKMMLKIVNQNQKFVRRVVSEEEAREAMKNEPYKLELLGK 159

Query: 671 K---------------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           K                 D     +VE ++G      LC G H+ +T  I   + ++ SS
Sbjct: 160 KNEAAEAGEGVNVEVGAGDITIYDNVERKEGTTVWCDLCRGPHLPNTKLISNAFALTRSS 219

Query: 716 IR 717
             
Sbjct: 220 SA 221


>gi|325972697|ref|YP_004248888.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
 gi|324027935|gb|ADY14694.1| threonyl-tRNA synthetase [Spirochaeta sp. Buddy]
          Length = 581

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I HS  H++  A+  +  S     G  I  +G  +D    + + + +L+ I   +  II
Sbjct: 12  RIRHSMAHVMAEAVLQMFPSAQITIGPAID-NGFYYDFDLPRQLVNDDLEEIAARMKAII 70

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           A+  P V  +++R +A    A       Y   +     E E+  ++S      LC G HV
Sbjct: 71  AEGKPFVRTVVSRAEARKQFADQ----TYKLELLDAIAEGEEVSLYSQGGFTDLCRGPHV 126

Query: 700 SSTGEIM--LLYIVSESSIRAGIRR 722
            ST E+      ++S   I     R
Sbjct: 127 ESTKELKADAFKLMS---IAGAYWR 148


>gi|224541524|ref|ZP_03682063.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525561|gb|EEF94666.1| hypothetical protein CATMIT_00694 [Catenibacterium mitsuokai DSM
           15897]
          Length = 585

 Score = 66.3 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
            ++NHS  H+L  A+  +        G  +  +G  +D+    + I+  +L  IE  +  
Sbjct: 11  NTLNHSCAHVLAQAVKHLYPQAKFWVGPVV-EEGFYYDIDLGDQTISDDDLPKIEKEMKK 69

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I      +V   +++E+A+             + +   ++     G  +  LC G HV +
Sbjct: 70  ICKDGKRIVRHEVSKEEALEEFKDDEYKLDLINGLEDGTITTYSQGDFTD-LCRGPHVET 128

Query: 702 TGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                   ++  S            ++RI  +     +  L    + L+    
Sbjct: 129 VKLCKNFKLIKHSGAYWKGDKNNKVLQRIYGVC-FPTKEELEAHLQLLEEAKE 180


>gi|86151198|ref|ZP_01069413.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841545|gb|EAQ58792.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 602

 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + ++   + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEILKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|86153772|ref|ZP_01071975.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842733|gb|EAQ59945.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 602

 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + ++   + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEILKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|148273002|ref|YP_001222563.1| threonyl-tRNA synthetase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830932|emb|CAN01876.1| thrS [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 684

 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 27/181 (14%)

Query: 565 LRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +     +  + ID  +   +   HSA H++  A+  I        G  +T DG  FD   
Sbjct: 56  VAPGDVVEPVRIDSPDGLSILR-HSAAHVMAQAVQQINPEAKLGIGPPVT-DGFYFDFDV 113

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----------TKY 672
           ++P T  +LK+I  N+  I+ Q      R++  E+A    A                 + 
Sbjct: 114 AEPFTPEDLKAISKNMERIVRQGQRFTRRVVTEEEARELMADEPYKLELIGLKGGSSEEL 173

Query: 673 NDRVRVVSVEYED-----------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
            +    V V   +           G V    LC G H+ ST  +   + +S   + A   
Sbjct: 174 GEDGESVEVGGAELTVYENVDGKTGEVFWRDLCRGPHLPSTRMVGNGWALS--RVAAAYW 231

Query: 722 R 722
           R
Sbjct: 232 R 232


>gi|317129892|ref|YP_004096174.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315474840|gb|ADU31443.1| threonyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 645

 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616
           +  + + ++      ++T D Q+  ++   HS  HL+  A+  +   +V      +   G
Sbjct: 47  YVDLRQPLVENGNLEIITYDSQDGLEILR-HSTAHLMAQAVKRLY-ENVKLGVGPVIEGG 104

Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676
             +D+     +T  +L+ IE  +  I+ +NL +    ++RE A+       +G      +
Sbjct: 105 FYYDIDMEHSLTPEDLEKIEKEMKRIVDENLEIRRVEVSRETAVQRY--KEIGDDLKLEL 162

Query: 677 RVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIV 711
                E +   ++       LC G H+ ST +I    ++
Sbjct: 163 LEDIPEGDTISIYEQGEFFDLCRGVHLPSTSKIKKFKLM 201


>gi|222152709|ref|YP_002561885.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
 gi|254783540|sp|B9DU13|SYT_STRU0 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|222113521|emb|CAR41303.1| threonyl-tRNA synthetase [Streptococcus uberis 0140J]
          Length = 648

 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I + +       +K   G F    I     + T+ S+ +         
Sbjct: 15  ESGITTFDIAQSISNSLA------KKALAGKFNGQLIDTNRPIDTDGSIEIVTPDHEDAF 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           S  I++ +L  IE  +  I
Sbjct: 69  GVLRHSAAHLFAQAAKRLFPDIHLGVGPAIAEGFYYDTDNSSGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGT----KYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           + +N P +   + +E+A+              +++D    +++ Y  G      LC G H
Sbjct: 129 VKENYPCIREEVTKEEALEIFKDDPYKIELINEHSDDAAGLTI-YRQGEF--VDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG I + +++   ++     R
Sbjct: 186 VPSTGRIQVFHLL---NVAGAYWR 206


>gi|183221772|ref|YP_001839768.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911846|ref|YP_001963401.1| threonyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776522|gb|ABZ94823.1| Threonine--tRNA ligase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167780194|gb|ABZ98492.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase; ThrRS)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 638

 Score = 66.3 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 23/160 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCIT--PDGLRFDVTHSKPITS-AELKSIEDNVND 641
            +HS+ HLL  A+  +        G  I   P    +D+     + +  +L  IE  +  
Sbjct: 74  FHHSSAHLLGMAVQRLWPEARLTVGPVIENGPGFFFYDIDFGDLVITVDDLPKIEAEMAK 133

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALC 694
           I+ ++L V    +++E+AI          K N+  +V  ++  D       G      LC
Sbjct: 134 IVKEDLTVKRWELSKEEAIEKF------KKENEPYKVELIQGFDAASVSLYGQGEWYDLC 187

Query: 695 GGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT 727
            G HV+ TG++    + + S       S    + RI  ++
Sbjct: 188 RGPHVARTGQLKAFKLTAISGAYWKGDSKNKQLTRIYGVS 227


>gi|42543894|pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
           From Pyrococcus Horikoshii
 gi|42543895|pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
           From Pyrococcus Horikoshii
 gi|73535455|pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With L-Serine
 gi|73535456|pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
           Complex With L-Serine
          Length = 165

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             HSA H++  A+  +LGS      S  +  +     V   +  +  E++ IE   N+ +
Sbjct: 7   RTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            +N P+    + RE+A                D   +  V  ED  V+    C   H  +
Sbjct: 67  KENAPIKIYELPREEAEKXFGEDXYDLFPVPEDVRILKVVVIEDWNVN---ACNKEHTKT 123

Query: 702 TGEIMLLYIVSES-SIRAGIRRIEA 725
           TGEI  + I         G+  I  
Sbjct: 124 TGEIGPIKIRKVRFRKSKGLLEIHF 148


>gi|332187352|ref|ZP_08389090.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
 gi|332012513|gb|EGI54580.1| threonyl-tRNA synthetase [Sphingomonas sp. S17]
          Length = 664

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 26/202 (12%)

Query: 567 TEMSLVLTI---DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
              + +  +   D  +  +L+  H   H+L  A+  +        G  +T DG  +D   
Sbjct: 52  EGDAALALVTAKDEADALELAR-HDYAHVLAEAVQALFPGTQITFGP-VTDDGFYYDFAP 109

Query: 624 -SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
             +P T  +L +IE  +  IIA++ P++  +  RE  I    A   G  +         +
Sbjct: 110 KDRPFTEEDLPAIEAEMRKIIAKDEPLIREVWTREQLIERWKAQ--GESFKAEWAAELPD 167

Query: 683 YEDGGVHSS--------ALCGGTHVSSTG--EIMLLYIVSESS-------IRAGIRRIEA 725
            E+  V+ +         +C G H++STG  +     +   S          A + RI  
Sbjct: 168 DEELTVYRAGKGEDAWLDMCRGPHLASTGKLDPNAFKLTRVSGAYWRGDQKNAMLSRIYG 227

Query: 726 ITGQRARSHLMGQDEKLKSLAS 747
            TG   +  L     +L+  A 
Sbjct: 228 -TGWLNKKQLAEHLTRLEEAAK 248


>gi|291542490|emb|CBL15600.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           bromii L2-63]
          Length = 648

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 22/202 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    +   +IG G+   +     K +G             + E+     +D Q    
Sbjct: 15  ENGTTPAEIAKSIGAGLYKSV--CCAKVDGDLCDLRTPLGKDCKVELLTFDNVDGQK--- 69

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+A+H+L  A+  +  +     G  +  +G  +D    KP +  +L+ I+  +  I
Sbjct: 70  -TFWHTASHVLAQAVKRLYPNAKCAIGPAVD-NGFYYDFDVEKPFSPEDLEKIKAEMKKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSS--------AL 693
           +   L +    ++ E+A           + N+  +V  V E+ D G H +         L
Sbjct: 128 VKSGLELERVELSPEEAEKKL------EEMNEPYKVELVKEHSDKGEHITFYKQGEFIDL 181

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G H+ S   I  + + + + 
Sbjct: 182 CAGPHLMSVAPIKAIELTACTG 203


>gi|86741833|ref|YP_482233.1| threonyl-tRNA synthetase [Frankia sp. CcI3]
 gi|86568695|gb|ABD12504.1| Ser-tRNA(Thr) hydrolase [Frankia sp. CcI3]
          Length = 701

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 66/203 (32%), Gaps = 35/203 (17%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID    R +   HS  H++  A+  +        G  I  DG  +D     P T  +L++
Sbjct: 103 IDSPAGRAIVR-HSTAHVVAQAVQELFPKARLGIGPPID-DGFYYDFDVESPFTPDDLRA 160

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRV-----VSVEYE 684
           IE     II        R++   +A A          L+G K +D         V V   
Sbjct: 161 IEKRAQAIIRAGQRFSRRVVTEPEARAELADEPYKIELIGLKSSDTAADDAEASVEVGAG 220

Query: 685 DGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIE 724
           +  ++              LC G HV +T  I    I+   S  A  R         RI 
Sbjct: 221 ELTIYDNLDAKTGELCWKDLCRGPHVPTTRAIPAFAILR--SAAAYWRGSEKNPQLQRIY 278

Query: 725 AITGQRARSHLMGQDEKLKSLAS 747
             T   +R  L     +L     
Sbjct: 279 G-TAWESRDALKAYQTRLAEAEK 300


>gi|203288149|ref|YP_002223164.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
 gi|238690577|sp|B5RQ59|SYT_BORRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201085369|gb|ACH94943.1| threonyl-tRNA synthetase [Borrelia recurrentis A1]
          Length = 583

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 15/197 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K I+  +L  IE  + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLELFPNTKIAIGPPI-KDGFYYDFDFEKHISEDDLLLIEHKMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
              P +  ++ RE A+                 V            + LC G HV +  +
Sbjct: 73  TGSPFIREVITREQALVLFKDEPYKIDLIQNFDVTDEITIYKSHKFTDLCRGPHVDNMNK 132

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +        +SI     R               +++ L  +   L  ++ ++   + ++ 
Sbjct: 133 LDP-KAFKLTSIAGAYWR------------GNERNKMLSRIYGTLWNNEKDLKAYL-KLQ 178

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE +K       R+L L
Sbjct: 179 EEIKKRDHRKLGRELNL 195


>gi|108562547|ref|YP_626863.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
 gi|123247050|sp|Q1CV33|SYT_HELPH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|107836320|gb|ABF84189.1| threonyl-tRNA synthetase [Helicobacter pylori HPAG1]
          Length = 612

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +    + RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 SKLAITKETLTREQALERFKGDELKHAVMSKISGDIFGVYKQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|330831140|ref|YP_004394092.1| hypothetical protein B565_3440 [Aeromonas veronii B565]
 gi|328806276|gb|AEB51475.1| hypothetical protein B565_3440 [Aeromonas veronii B565]
          Length = 285

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 86/263 (32%), Gaps = 46/263 (17%)

Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQI--- 543
           S V    Q+   V     G    +V D TPF+ ++     Q GD G A  +G    I   
Sbjct: 7   SFVLGHHQEQASVVCCQRGDTTLLVTDLTPFHPQSHLWPDQPGDVGHARWEGGEAAIGPC 66

Query: 544 ----------------TDVQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585
                             V++ AEG    V H +     L     + L +D   R  LS+
Sbjct: 67  RMGAISPDGELFVDTAIPVKRGAEGWRFVVVHPLTGDHTLAVGSQVELQVDRAARHALSL 126

Query: 586 NHSATHLLHH------------------ALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
            HS  HL                     AL       ++   S + P G R      K +
Sbjct: 127 GHSGCHLAALALNRALIPYWRKEVSERDALGQPDFDRLAIQSSRVEPCGSREQYRIGKSL 186

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
               + S E  + D+      V  ++ +   A      +  G    D  R      E  G
Sbjct: 187 RKKGVNS-EALLPDLALIEEKVNQQLADWIAAGGEIRRSRAGEAIID-SRYWHCTLE--G 242

Query: 688 VHSSALCGGTHVSSTGEIMLLYI 710
              +  CGGTHV+S  E+  + +
Sbjct: 243 QEVTIPCGGTHVASLAELGEVKV 265


>gi|16081615|ref|NP_393975.1| hypothetical protein Ta0499 [Thermoplasma acidophilum DSM 1728]
 gi|10639668|emb|CAC11640.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 237

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 9/173 (5%)

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVL 573
            DQ+ FY    G+  DTG  I DG   QI D     +G ++H   ++         ++  
Sbjct: 30  VDQSIFYPTTFGEPNDTGKVIIDGKEYQIVDTI--YDGEYIHLISMDTYPQTVVGKTVKQ 87

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ID+  R       +A  ++           VS   +    D    D+     IT  E+ 
Sbjct: 88  KIDWDKRYIHMRFRTALRIISGLAYAKW--KVSCRVNETYDDRAWIDIEKP-DITEDEIN 144

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYN-DRVRVVSVEY 683
            I    ND++ ++L V  R +  ED   S     +     Y+ DR+R++S+E 
Sbjct: 145 EIMAEANDVVKKDLDVRFRYIGLEDFNRSEDLKKMSIHDAYDEDRIRIMSIEG 197


>gi|56696171|ref|YP_166527.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
 gi|73919826|sp|Q5LTX8|SYT_SILPO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56677908|gb|AAV94574.1| threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3]
          Length = 648

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I  +     G  I  +G  +D   ++P T  +L  IE  + +II +
Sbjct: 75  RHDLAHIMARAVQEIWPATKVTIGPVI-ENGWYYDFDRAEPFTPEDLGLIEKKMKEIINK 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVSS 701
             PV T +  R  AI    A      Y   +       E   ++       LC G H+  
Sbjct: 134 REPVTTEVWERTRAIEFYKAN--NEPYKVELIEAIPGTEPIRMYWHGHWQDLCRGPHLQH 191

Query: 702 TGEI--MLLYIVSESSIRAGIRR 722
           TG++      ++S   I     R
Sbjct: 192 TGQVPGDAFKLMS---IAGAYWR 211


>gi|109947952|ref|YP_665180.1| threonyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba]
 gi|123362536|sp|Q17VZ5|SYT_HELAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109715173|emb|CAK00181.1| thrS [Helicobacter acinonychis str. Sheeba]
          Length = 612

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   +  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTASKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   ++ +E A+       L      ++   +      G     LC G H+ +T  
Sbjct: 109 SKLAITKEVLTKEQALERFKGDELKHAVMSKISGDAFGVYQQGGF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDEKNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|306831875|ref|ZP_07465030.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425801|gb|EFM28918.1| threonine--tRNA ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 648

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 17/236 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTPFEIAQSISNSLA------KKALAGKFNGQLIDTTREITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
             + HSA HL   A   +        G  I  DG  +D  + +  I+  +L  IE+ +  
Sbjct: 69  GILRHSAAHLFAQAAKRLFPDLCLGVGPAI-EDGFYYDTDNKAGQISDEDLPRIEEEMKK 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTH 698
           I+ +N P + + +  ++A           +  +           Y  G      LC G H
Sbjct: 128 IVKENFPCIRKEITIDEARELFKNDPYKLELIEEHGADEGGLTVYSQGEFTD--LCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           V STG I + +++   ++     R  +      R +     +K K L ++LK  Q 
Sbjct: 186 VPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRVYGTAWFDK-KDLKAYLKQRQE 237


>gi|50913800|ref|YP_059772.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
 gi|68052904|sp|Q5XDC4|SYT_STRP6 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50902874|gb|AAT86589.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10394]
          Length = 647

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   ++   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESLSKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNAEGQISNEDLPRIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|84501632|ref|ZP_00999804.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
 gi|84390253|gb|EAQ02812.1| Threonyl-tRNA synthetase, class IIa [Oceanicola batsensis HTCC2597]
          Length = 659

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 26/202 (12%)

Query: 564 ILRTEMSLVLTI--DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
            +  + S+ +    D +   +L   H   H++  A+  I        G  +   G  +D 
Sbjct: 52  PIEKDASVAIHTMQDDEQALELIR-HDLAHIMARAVQEIWPEVKVTIGP-VRDYGWFYDF 109

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
              +P T  +L  IE  + +II     V T + +R+ AIA       G  Y   +     
Sbjct: 110 DREEPFTPEDLGRIEARMKEIINARDAVRTEVWSRDQAIAHYEKT--GEPYKVELVNRIP 167

Query: 682 EYE----DGGVHSSALCGGTHVSSTGEI--MLLYIVSESSIRAGIR----------RIEA 725
           E E            LC G H+  TG++      +     I               RI  
Sbjct: 168 EGEPIRMYWHGDWQDLCRGPHLQHTGQVPADAFKLT---HIAGAYWLGDSSRPMLQRIYG 224

Query: 726 ITGQRARSHLMGQDEKLKSLAS 747
           I   + R+ L      L+  A 
Sbjct: 225 IA-FKNRNDLKAHLNMLEEAAK 245


>gi|254441196|ref|ZP_05054689.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
 gi|198251274|gb|EDY75589.1| threonyl-tRNA synthetase [Octadecabacter antarcticus 307]
          Length = 649

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  DG  +D    +  T  +L +IE  + +II 
Sbjct: 75  IRHDLAHIMARAVQELWPDTQVTIGPVI-KDGWYYDFDRKEAFTPDDLGTIEKKMKEIIN 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T + +RE AI        G  Y   +       E            LC G H+ 
Sbjct: 134 KRDAVRTEVWDREVAIKYYEDR--GEPYKIELINGIPGDEPLRMYWHGDWQDLCRGPHLQ 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG++         SI     R
Sbjct: 192 NTGQVPG-DSWKLMSIAGAYWR 212


>gi|116670864|ref|YP_831797.1| threonyl-tRNA synthetase [Arthrobacter sp. FB24]
 gi|166223319|sp|A0JXC7|SYT_ARTS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116610973|gb|ABK03697.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Arthrobacter
           sp. FB24]
          Length = 669

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 79/228 (34%), Gaps = 41/228 (17%)

Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555
           +   + +   V G++ +V    T                   G  L           +  
Sbjct: 1   MSDAQQITLIVDGEETKVTTGTT-------------------GAELFFERRDVVVARVNG 41

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615
               +++ +        +TID  +   +   HS  H++  A+  +        G  IT D
Sbjct: 42  ELKDLDQPLPEGADIEGVTIDSPDGLNVLR-HSTAHVMAQAVQQLRPDAKLGIGPYIT-D 99

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGT 670
           G  FD   ++P T  +LK++E  +  II QN   V R+++ ++A  +         LLG 
Sbjct: 100 GFYFDFDVAEPFTPEDLKALEKMMLKIINQNQKFVRRVVSEDEAREAMKNEPYKLELLGK 159

Query: 671 K---------------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           K                 D     +V+ + G      LC G H+ +T 
Sbjct: 160 KNNAADAGEGVNVEVGAGDITIYDNVDRKSGDSVWCDLCRGPHLPNTK 207


>gi|288905772|ref|YP_003430994.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325978807|ref|YP_004288523.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732498|emb|CBI14070.1| Threonyl-tRNA synthetase [Streptococcus gallolyticus UCN34]
 gi|325178735|emb|CBZ48779.1| threonyl-tRNA synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 648

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 17/236 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTPFEIAQSISNSLA------KKALAGKFNGQLIDTTREITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
             + HSA HL   A   +        G  I  DG  +D  + +  I+  +L  IE+ +  
Sbjct: 69  GILRHSAAHLFAQAAKRLFPDLCLGVGPAI-EDGFYYDTDNKAGQISDEDLPRIEEEMKK 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTH 698
           I+ +N P + + +  ++A           +  +           Y  G      LC G H
Sbjct: 128 IVKENFPCIRKEITIDEARELFKNDPYKLELIEEHGADEGGLTVYSQGEFTD--LCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           V STG I + +++   ++     R  +      R +     +K K L ++LK  Q 
Sbjct: 186 VPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRVYGTAWFDK-KDLKAYLKQRQE 237


>gi|297716113|ref|XP_002834389.1| PREDICTED: alanyl-tRNA editing protein Aarsd1-like [Pongo abelii]
          Length = 141

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562
           +E +SG   +VV + T  + E GGQ  D G    D   L++T   ++A+          +
Sbjct: 35  KEVLSG--FQVVLEDTLLFPEGGGQPDDHGTI-NDISVLRVTRRGEQAD-------HFTQ 84

Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSA 589
             L     +++ +D++ R      HS 
Sbjct: 85  TPLDPGSQVLVRVDWERRFDHMQQHSG 111


>gi|77408338|ref|ZP_00785079.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77173019|gb|EAO76147.1| threonyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 647

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 6/213 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGQLIDTTRAIEEDGSIEIVTPDHEDALGVLRHSAAHLFAQAAKRLFPDLCL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           S  I++ +L  IE+ +  I+ +N P +   +++E+A+      
Sbjct: 93  GVGPAIHDGFYYDTDNKSGQISNDDLPRIEEEMKKIVKENHPCIREEISKEEALELFKDD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
               +         +     G     LC G HV STG I + +++   ++     R  + 
Sbjct: 153 PYKVELISEHAEDGLTVYRQGEF-VDLCRGPHVPSTGRIQVFHLL---NVAGAYWRGNSD 208

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                R +     +K K L ++LK  +     R
Sbjct: 209 NAMMQRVYGTAWFDK-KDLKAYLK-RREEAKER 239


>gi|319935875|ref|ZP_08010301.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
 gi|319809142|gb|EFW05623.1| threonyl-tRNA synthetase [Coprobacillus sp. 29_1]
          Length = 581

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNV 639
           +   +NHS  H+L  A+  +  +     G  ++ +G  +D+    K I   ++ +IE  +
Sbjct: 13  QLNMLNHSCAHVLAQAIQHLYPNAKFWVGPVVS-EGFYYDIDLGDKVIKDEDIPAIEKEM 71

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             I      ++    ++ +A+               +    +     G     LC G HV
Sbjct: 72  KKICKDGKRIIREEHSKAEAMEMFKDDPYKLDLISGLEDGHITCYRQGDFVD-LCRGPHV 130

Query: 700 SSTGEIMLLYIVSESS 715
            +        ++  S 
Sbjct: 131 ETVKMCKNFKLLKHSG 146


>gi|306833981|ref|ZP_07467104.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
 gi|304423847|gb|EFM26990.1| threonine--tRNA ligase [Streptococcus bovis ATCC 700338]
          Length = 666

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 17/236 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 33  ESGVTPFEIAQSISNSLA------KKALAGKFNGQLIDTTREITEDGSIEIVTPDHEDAL 86

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
             + HSA HL   A   +        G  I  DG  +D  + +  I+  +L  IE+ +  
Sbjct: 87  GILRHSAAHLFAQAAKRLFPDLCLGVGPAI-EDGFYYDTDNKAGQISDEDLPRIEEEMKK 145

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTH 698
           I+ +N P + + +  ++A           +  +           Y  G      LC G H
Sbjct: 146 IVKENFPCIRKEITIDEARELFKNDPYKLELIEEHGADEGGLTVYSQGEFTD--LCRGPH 203

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           V STG I + +++   ++     R  +      R +     +K K L ++LK  Q 
Sbjct: 204 VPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRVYGTAWFDK-KDLKAYLKQRQE 255


>gi|148555657|ref|YP_001263239.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
 gi|148500847|gb|ABQ69101.1| threonyl-tRNA synthetase [Sphingomonas wittichii RW1]
          Length = 690

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAEL 632
           D  +   L+  H   H+L  A+ ++        G   T DG  +D   +    P T  EL
Sbjct: 89  DEADALDLAR-HDYAHVLAEAVQSLFPGTQITFGPS-TDDGFYYDFAPAPGRGPFTDEEL 146

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----G 687
            +IE  +  IIA N P+   + +RE  I+       G  +           E       G
Sbjct: 147 PAIEAEMRRIIAANKPLRREVWSREQLISRWKQQ--GETFKAEWAAELPGDEPLTVYWSG 204

Query: 688 VHSSALCGGTHVSSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQ 738
                +C G H+ STG  +     +   S          A + RI   TG   +  L   
Sbjct: 205 DDWLDMCRGPHLPSTGKLDPQAFKLTRVSGAYWRGDQKNAMLSRIYG-TGWLNKKQLDAH 263

Query: 739 DEKLKSLAS 747
             +L+  A 
Sbjct: 264 LTRLEEAAK 272


>gi|325997000|gb|ADZ49208.1| Threonyl-tRNA synthetase [Helicobacter pylori 2017]
          Length = 573

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   S  I+  +L  IE  + +   
Sbjct: 11  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTSSKISEEDLPKIEAKMKEFAK 69

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   I+ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 70  LKLAIAKEILTREQALERFKGDELKHAVMSKISGDIFGVYKQGEF-EDLCKGPHLPNTRF 128

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 129 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 178


>gi|126725645|ref|ZP_01741487.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
 gi|126704849|gb|EBA03940.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150]
          Length = 649

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 75  IRHDFAHVMARAVQALWPDVKVTIGPVI-ENGWYYDFDRTEPFTPEDLGAIEKKMKEIIN 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
               V T + +R  AI       LG  Y   +       E   ++       LC G H+ 
Sbjct: 134 LRDVVKTEVWDRARAIQHYND--LGEPYKVELIESIPGDEPLRMYWHGEWQDLCRGPHLQ 191

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
            TG++      ++S   +     R
Sbjct: 192 HTGQLPADAFKLMS---VAGAYWR 212


>gi|314966718|gb|EFT10817.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA2]
          Length = 689

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANAFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREDLAAYQQRIKEA 257


>gi|314923371|gb|EFS87202.1| threonyl-tRNA synthetase [Propionibacterium acnes HL001PA1]
 gi|315093365|gb|EFT65341.1| threonyl-tRNA synthetase [Propionibacterium acnes HL060PA1]
 gi|315103379|gb|EFT75355.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA2]
 gi|327327544|gb|EGE69320.1| threonine--tRNA ligase [Propionibacterium acnes HL103PA1]
          Length = 689

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANAFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREDLAAYQQRIKEA 257


>gi|314981048|gb|EFT25142.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA3]
 gi|315091876|gb|EFT63852.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA4]
          Length = 689

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANAFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREDLAAYQQRIKEA 257


>gi|282853974|ref|ZP_06263311.1| threonine--tRNA ligase [Propionibacterium acnes J139]
 gi|282583427|gb|EFB88807.1| threonine--tRNA ligase [Propionibacterium acnes J139]
          Length = 684

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 49  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 107

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 108 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 167

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 168 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANAFALTKFSAAYWKGDQANDQ 227

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 228 LQRIYG-TAWASREDLAAYQQRIKEA 252


>gi|228994292|ref|ZP_04154183.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228765442|gb|EEM14105.1| Threonyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 641

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H++ H+L  A+  I G  V      +  +G  +D+     I   +L  +E  + +I+ +
Sbjct: 76  RHTSAHILAQAVKRIYGD-VKLGVGPVIENGFYYDMDLPSSIGVEDLPKLEKEMKNIVNE 134

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
           NL +    + R++A        +       +     E E   ++       LC G H+ S
Sbjct: 135 NLKIERVEITRKEAEKLF--KDVNDHLKLELLEAIPENEIVTIYKQGEFVDLCRGPHLPS 192

Query: 702 TGEIMLLYIVSESS 715
           TG +    +   S 
Sbjct: 193 TGYLKAFQLTHVSG 206


>gi|145298933|ref|YP_001141774.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166223317|sp|A4SMA4|SYT_AERS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|142851705|gb|ABO90026.1| threonyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 642

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HLL HA+  +        G  I  +G  +DV   + +T  +L ++E+ +  + A
Sbjct: 71  LRHSCAHLLGHAIKQLWPQTKMAIGPVID-NGFYYDVDLDRTLTDDDLAALEERMLALAA 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA----LCGGTHV 699
           ++  V+ + ++ ++A     A   G  Y   +   ++  +D  G++       +C G HV
Sbjct: 130 KDYDVIKKKVSWQEARDVFEAR--GETYKVEILDQNIARDDQPGLYHHEEYVDMCRGPHV 187

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            +        +   S       S    ++RI   T    +  L G  ++L+  + 
Sbjct: 188 PNMRHCHHFKLQKMSGAYWRGDSNNKMLQRIYG-TAWADKKQLKGYLQRLEEASK 241


>gi|307636813|gb|ADN79263.1| threonyl tRNA sythetase [Helicobacter pylori 908]
 gi|325995402|gb|ADZ50807.1| Threonyl-tRNA synthetase [Helicobacter pylori 2018]
          Length = 612

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL  +L  +        G  +  +G  +D   S  I+  +L  IE  + +   
Sbjct: 50  IRHSCAHLLAQSLKALYPDAKFFVGPVV-EEGFYYDFKTSSKISEEDLPKIEAKMKEFAK 108

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             L +   I+ RE A+       L      ++          G     LC G H+ +T  
Sbjct: 109 LKLAIAKEILTREQALERFKGDELKHAVMSKISGDIFGVYKQGEF-EDLCKGPHLPNTRF 167

Query: 705 IMLLYIVSESSIRAG----------IRRIEAITGQRARSHLMGQDEKLKS 744
           +    +   +    G          I  I   T +  + +L   +E  K 
Sbjct: 168 LNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKR 217


>gi|318041217|ref|ZP_07973173.1| threonyl-tRNA synthetase [Synechococcus sp. CB0101]
          Length = 570

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 23/232 (9%)

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++  A+  +        G   T +G  +D     P T A+LK+I+  +  II + LP+ 
Sbjct: 3   HVMAMAVQRLFPKAQVTIGPW-TENGFYYDFDSPDPFTEADLKAIKKEMIKIINKKLPLE 61

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
              ++R +A     A     K      +   +     G     LC G HV+ST E+    
Sbjct: 62  RLEVSRAEAETKIKAQNEPYKLEILAGINEPITLYTLGEEWWDLCAGPHVASTAELNA-K 120

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                S+     R                + +L+ +      +   +         EY++
Sbjct: 121 AFELESVAGAYWR------------GDENNAQLQRIYGTAWETPEQLA--------EYKR 160

Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            Q    +R  +    DL    I D      +        ++ +++ L +++ 
Sbjct: 161 RQEEAKRRDHRRIGTDLDLFSIEDEAGAGLVFWHPRGARMRLLIENLWRELH 212


>gi|294673422|ref|YP_003574038.1| class-II aminoacyl-tRNA synthetase family [Prevotella ruminicola
           23]
 gi|294473564|gb|ADE82953.1| class-II aminoacyl-tRNA synthetase family [Prevotella ruminicola
           23]
          Length = 155

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            ++  N+ +    H+A HLL+  +  +     S N + +     +     ++  + AE +
Sbjct: 5   VLNEHNKEEFPPAHTAEHLLNQTMIRMFDCGRSYN-AHVERKKSKMSFHLAQKPSRAEER 63

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            IE+ +ND+IAQ+LPV    + R+          L    ++ +R+V +     G +    
Sbjct: 64  EIEERMNDLIAQDLPVTFEFVTRDTIPDDVTLDRLPDDASETIRLVRI-----GDYDVCP 118

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV ST +I    ++ 
Sbjct: 119 CIGKHVRSTSQIGRFELLG 137


>gi|146310253|ref|YP_001175327.1| alanyl-tRNA synthetase-related protein [Enterobacter sp. 638]
 gi|145317129|gb|ABP59276.1| alanyl-tRNA synthetase-related protein [Enterobacter sp. 638]
          Length = 209

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 74/213 (34%), Gaps = 36/213 (16%)

Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565
               +  +  DQT F+ + GGQ  DTG  +G    + + +V ++ E I    A      L
Sbjct: 24  EQDGRYAIELDQTLFHPQGGGQPADTGWIVG----VAVEEVIQRDENIVHILAR----SL 75

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
                + + ID   R   S  H+A HL+ +A     G    +         + F      
Sbjct: 76  ALG-EVDIQIDAAVRELHSRWHTAGHLIGYAGER-FGWRPVKAHHWPGEGRITFIPGEEG 133

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
              SA+                      M +E      A  L+     D  R   V +  
Sbjct: 134 AAPSAD----------------------MFKELIDGWRAEKLIRHVEMDEGR-RKVWF-- 168

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
            GV  + LCGGTHVS   ++  + I +    + 
Sbjct: 169 -GVLPAYLCGGTHVSDLSKLGEVEISNVKQKKG 200


>gi|78212568|ref|YP_381347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Synechococcus
           sp. CC9605]
 gi|123756917|sp|Q3AKU0|SYT_SYNSC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78197027|gb|ABB34792.1| threonyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 611

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 27/247 (10%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
           ++ + L I HS +H++  A+  +        G   T  G  +D  +  P T A+LK+I+ 
Sbjct: 30  ESDQLLKIRHSMSHVMAMAVQQLFPKARVTIGPW-TETGFYYDFDNPDPFTEADLKAIKK 88

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALC 694
            +  II + LP+    ++R +A     A      Y   +       +     G     LC
Sbjct: 89  GMIKIINKKLPLQRVEVSRNEAEEKIKAQ--NEPYKLEILQGLHEPITLYTLGEDWWDLC 146

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G HV  TG++         S+     R     G   ++ L                S  
Sbjct: 147 AGPHVDHTGQLNA-KAFELESLAGAYWR-----GDETKAQLQRIYGTAWE-------SPE 193

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
            +         E+++ +    +R  +   +DL    I D      +        ++ +++
Sbjct: 194 QLA--------EHKRRKEEALRRDHRRIGKDLDLFSIEDEAGAGLVFWHPRGARIRLLIE 245

Query: 815 ALQKKIQ 821
              ++  
Sbjct: 246 EFWRQAH 252


>gi|319442178|ref|ZP_07991334.1| threonyl-tRNA synthetase [Corynebacterium variabile DSM 44702]
          Length = 697

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 33/206 (16%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++    D        I HS  H+L  A+           G  I  +G  +D   ++P T 
Sbjct: 74  AVAANTDEGR---GVIRHSCAHVLAQAVQKEFPGTKLGIGPAI-ENGFYYDFEPAEPFTP 129

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLG-TKYNDRVRVVSVEYED-- 685
            +LK +E ++  II        +  +  EDA              +D+ R    E +   
Sbjct: 130 EDLKKLEKSMKKIIKSGQKFERKAYDSVEDARLEYLQEPFKLELVDDKSRGDIPEGDASV 189

Query: 686 -----------------GGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIR 721
                            G V    LC G HV +T  I    +   S+        +AG++
Sbjct: 190 EVGEGELTAYSNVNPRSGEVEWYDLCRGPHVPTTRYIPAFALTRTSAAYWRGDQSKAGLQ 249

Query: 722 RIEAITGQRARSHLMGQDEKLKSLAS 747
           RI   T   ++  L      L     
Sbjct: 250 RIYG-TAWESKEALDEYQTMLAEAEK 274


>gi|124804231|ref|XP_001347941.1| threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
 gi|23496195|gb|AAN35854.1|AE014840_2 threonine -- tRNA ligase, putative [Plasmodium falciparum 3D7]
          Length = 1013

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 75/188 (39%), Gaps = 26/188 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  +L  + G  ++   +    +G  +D   ++  I + + K IED  N ++  
Sbjct: 362 HSSAHILGSSLEKLFGGFLTIGPAL--KEGFYYDIFLNNFSINNEDYKRIEDEFNKLVKD 419

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
           N+P    I  +E+A+          +    +R    + +   V+       LC G H+ +
Sbjct: 420 NVPFEKVICTKEEALELFDYNPFKLEL---IRSKIPDNKKTSVYRCGNFIDLCLGPHIKN 476

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG++    ++  SS               A      +++ L+ +       +  +V  + 
Sbjct: 477 TGKVKTFKVLKNSS---------------AYWLGQKENDSLQRVYGISFQKKSELVEYL- 520

Query: 762 EIWEEYRK 769
           +  EE +K
Sbjct: 521 KFLEEAKK 528


>gi|153812461|ref|ZP_01965129.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
 gi|149831386|gb|EDM86474.1| hypothetical protein RUMOBE_02860 [Ruminococcus obeum ATCC 29174]
          Length = 657

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+A+H+L  A+ T+        G  I   G  +D  H +P +  +L  IE  +  II 
Sbjct: 70  LRHTASHVLAQAVQTLYPEAKVAIGPSIDT-GFYYDFAH-EPFSREDLDEIEKEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +     +REDAIA          Y   +     E E+   +S      LC G H+ 
Sbjct: 128 KGAKIERFTKSREDAIAFF--KEKNEPYKVELIEDLPEGEEISFYSQGDWTDLCAGPHLM 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    ++S SS               A      ++  L  +      ++  +   +
Sbjct: 186 SVKGVKAFKLLSSSS---------------AYWRGSEKNAMLTRIYGTAYATKDELKEHL 230

Query: 761 EEIWEEYRK 769
           E++ E  ++
Sbjct: 231 EQMEEAKKR 239


>gi|295109520|emb|CBL23473.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           obeum A2-162]
          Length = 653

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 23/189 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+A+H+L  A+  +        G  I   G  +D  H +P +  +L +IE  +  II 
Sbjct: 70  LRHTASHVLAQAVQNLYPEAKVAIGPSIDT-GFYYDFAH-EPFSREDLDAIEKEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +     +REDAIA          Y   +     E  +   +S      LC G H+ 
Sbjct: 128 KGAKIERFTKSREDAIAYF--KEKNEPYKVELIEDLPEDAEISFYSQGDWTDLCAGPHLM 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    ++S SS               A      ++  L  +      S+  +   +
Sbjct: 186 SVKGVKAFKLLSSSS---------------AYWRGSEKNAMLTRIYGTAYASKDELKEHL 230

Query: 761 EEIWEEYRK 769
           E++ E  R+
Sbjct: 231 EQMEEAKRR 239


>gi|111224550|ref|YP_715344.1| threonyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111152082|emb|CAJ63808.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) [Frankia alni
           ACN14a]
          Length = 692

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 63/196 (32%), Gaps = 38/196 (19%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSA H++  A+  +        G  I  +G  +D     P T  +LK+IE     II  
Sbjct: 100 RHSAAHVVAQAVQDLFPKARLGIGPPID-NGFYYDFDVETPFTPEDLKAIEKKAQAIIKA 158

Query: 646 NLPVVTRIMNREDAIAS-----GAAALLGTKY--------------------NDRVRVVS 680
                 R++  E A A          L+G K                      +     +
Sbjct: 159 GQRFSRRVVTEEQARAELAAEPYKIELIGLKSSAGEDAEAEADAEAAVEVGAGELTIYDN 218

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRA 731
           ++ + G +    LC G HV ST  I    I+   S  A  R         RI   T   +
Sbjct: 219 LDAKTGELCWKDLCRGPHVPSTRSIPAFAILR--SAAAYWRGSEKNPQLQRIYG-TAWES 275

Query: 732 RSHLMGQDEKLKSLAS 747
           R  L     +L     
Sbjct: 276 RDALKAYQTRLAEAEK 291


>gi|86359908|ref|YP_471798.1| class II aminoacyl t-RNA synthetase domain-containing protein
           [Rhizobium etli CFN 42]
 gi|86284010|gb|ABC93071.1| putative class II aminoacyl t-RNA synthetase domain protein
           [Rhizobium etli CFN 42]
          Length = 245

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 90/285 (31%), Gaps = 80/285 (28%)

Query: 43  MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102
           M  +K +F   +      V   Q C+R G    DLD +G    H   F MLG FSF    
Sbjct: 1   MQQYKALF--SDPSFSGTVANSQACLRMG----DLDEIG-DGTHFLHFTMLGLFSFREMT 53

Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWS 162
              AI   W        L     ++T++ +       W  +      ++  +   +  WS
Sbjct: 54  VGDAIDF-WLAFLGTLGLAPD--HVTMHPDRLIE---WTPLY---DGRVPIVADAECIWS 104

Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222
                  G C+E F+  G                 IEI N+V                  
Sbjct: 105 DGSIS--GYCTE-FYKHG-----------------IEIGNIVN-------------PLGS 131

Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282
            ID G G ER+  ++         D  + L +                          + 
Sbjct: 132 CIDVGFGAERLDMIVNGTPP---ADALETLRE--------------------------TV 162

Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327
             ++  G  P N+ +GYVLR+++RR       L    P     + 
Sbjct: 163 MTIVESGYRPGNKEQGYVLRKLLRRIHKMGGTL--EHPFFQKEVE 205


>gi|322372498|ref|ZP_08047034.1| threonine--tRNA ligase [Streptococcus sp. C150]
 gi|321277540|gb|EFX54609.1| threonine--tRNA ligase [Streptococcus sp. C150]
          Length = 648

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|89053589|ref|YP_509040.1| threonyl-tRNA synthetase [Jannaschia sp. CCS1]
 gi|88863138|gb|ABD54015.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Jannaschia sp.
           CCS1]
          Length = 648

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  +   G  +D    +P T  +L +IE  + +II 
Sbjct: 74  IRHDCAHIMARAVQEIWPDVKVTIGP-VRDKGWFYDFDRPEPFTPEDLGAIEAKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
               V T I +R+   A   A      Y   +       E            +C G H+ 
Sbjct: 133 ARDAVRTEIWDRDRVRAHYEAT--DEPYKIELLDRIPGDEPIRMYWHGDWQDMCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESS---IRAGIR----RIEAIT---GQRARSHLMGQDEKLKS 744
            TG++      ++S ++   +    R    RI  +        R +L   +E  K 
Sbjct: 191 HTGQVPADAFKLMSVAAAYWLGDNTRPMLQRIYGVAFKNRDDLRKYLNFLEEAEKR 246


>gi|160880797|ref|YP_001559765.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160429463|gb|ABX43026.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 584

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H++ H+L  A+  +  +     G  +   G  +D       T+  L+ +ED +  II
Sbjct: 23  AFWHTSAHVLAQAVKRLYPTTKCAIGPSV-EQGFYYDFEFDFNFTAEHLQKVEDMMKAII 81

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTH 698
            ++L +   I+NRE+AI        G  Y     N+      + + + G     LC G H
Sbjct: 82  EESLVLQQFILNREEAI--HYLKKKGEPYKLEILNELPIDAKISFFEQGEFVD-LCSGPH 138

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           +S+   I  L ++    +     R
Sbjct: 139 LSNVSYIKALKLI---QVAGAYWR 159


>gi|154249412|ref|YP_001410237.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154153348|gb|ABS60580.1| threonyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 638

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 585 INHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
             H+ +H++  A+  I G  +V         +G  +D    +  IT  +L  IE+ +  I
Sbjct: 70  YRHTMSHIMAQAVMRIYGAENVKLGIGPTIENGFYYDFDIANVKITEEDLPKIEEEMKKI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           I ++LP+    + +++AI    +   +   +  + +    V +   G     LC G H+ 
Sbjct: 130 IKEDLPIERLELPKKEAIELMESKGQMYKIELINEIPDEKVSFYKQGEFID-LCRGPHLP 188

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++  L ++S S                A      ++  L+ +       +  +   +
Sbjct: 189 STGKVKHLKLLSVSG---------------AYWRGNEKNPMLQRIYGTAFAKKDELDNYL 233

Query: 761 EEIWEEYRK 769
           + + E  ++
Sbjct: 234 KMLEEARKR 242


>gi|319744717|gb|EFV97060.1| threonine--tRNA ligase [Streptococcus agalactiae ATCC 13813]
          Length = 647

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 6/213 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGQLIDTTRAIEEDGSIEIVTPDHEDALGVLRHSAAHLFAQAAKRLFPDLCL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           S  I++ +L  IE+ +  I+ +N P +   +++E+A+      
Sbjct: 93  GVGPAIQDGFYYDTDNKSGQISNDDLSRIEEEMKKIVKENHPCIREEISKEEALELFKDD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
               +         +     G     LC G HV STG I + +++   ++     R  + 
Sbjct: 153 PYKVELISEHAEDGLTVYRQGEF-VDLCRGPHVPSTGRIQVFHLL---NVAGAYWRGNSD 208

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                R +     +K K L ++LK  +     R
Sbjct: 209 NAMMQRVYGTAWFDK-KDLKAYLK-RREEAKER 239


>gi|126740677|ref|ZP_01756363.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
 gi|126718192|gb|EBA14908.1| threonyl-tRNA synthetase [Roseobacter sp. SK209-2-6]
          Length = 649

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  +G  +D   ++P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHVMARAVQEIWPDTKVTIGPVI-ENGWYYDFDRAEPFTPEDLGAIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVS 700
           +   V T + +R  AI   +       Y   +       E            LC G H+ 
Sbjct: 133 KRDEVRTEVWDRPRAILHYSDN--NEPYKVELIESIPGDEPLRMYWHGDWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSI-------RAGIRRIEAI--TGQRARS-HLMGQDEKLKS 744
            TG++      ++S +         RA ++RI  +  TG+     HL   +E  K 
Sbjct: 191 HTGQLPGDAFKLMSIAGAYWRGDSDRAMLQRIYGVAFTGKEKLKAHLHMLEEAAKR 246


>gi|72162507|ref|YP_290164.1| threonyl-tRNA synthetase [Thermobifida fusca YX]
 gi|123747139|sp|Q47N28|SYT_THEFY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|71916239|gb|AAZ56141.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Thermobifida
           fusca YX]
          Length = 659

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 26/180 (14%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + ID +  R +   HS  H+L  A+  +        G  I  +G  +D  
Sbjct: 50  ELADGDVVEEIRIDSEEGRAILR-HSCAHVLAQAVQELFPEAKLGIGPPI-ENGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-------- 674
            ++P T  +LK IE  + +II Q      R +  EDA A  A      +  +        
Sbjct: 108 VAEPFTPDDLKRIEKRMQEIIKQGQRFSRRAVTDEDARAELADEPYKLELIELKGGAAEA 167

Query: 675 ------------RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                            ++    G V    LC G H+  T  I    ++      A   R
Sbjct: 168 AEGAGVEVGAGQLTIYDNLHPRTGEVCWKDLCRGPHLPDTRAIPAFKLM---RTAAAYWR 224


>gi|319938817|ref|ZP_08013181.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811867|gb|EFW08133.1| threonyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 650

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGSTTFDIAQSISNSLA------KKALAGKFNGKLIDTTRPITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNTAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + ++ A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDQAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|22536875|ref|NP_687726.1| threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76787804|ref|YP_329459.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76799413|ref|ZP_00781564.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77405954|ref|ZP_00783034.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
 gi|77413516|ref|ZP_00789706.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|73919828|sp|Q8E0L9|SYT_STRA5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123771973|sp|Q3K1Z4|SYT_STRA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|22533725|gb|AAM99598.1|AE014224_1 threonyl-tRNA synthetase [Streptococcus agalactiae 2603V/R]
 gi|76562861|gb|ABA45445.1| threonyl-tRNA synthetase [Streptococcus agalactiae A909]
 gi|76585236|gb|EAO61843.1| threonyl-tRNA synthetase [Streptococcus agalactiae 18RS21]
 gi|77160460|gb|EAO71581.1| threonyl-tRNA synthetase [Streptococcus agalactiae 515]
 gi|77175465|gb|EAO78254.1| threonyl-tRNA synthetase [Streptococcus agalactiae H36B]
          Length = 647

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 75/213 (35%), Gaps = 6/213 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGQLIDTTRAIEEDGSIEIVTPDHEDALGVLRHSAAHLFAQAAKRLFPDLCL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           S  I++ +L  IE+ +  I+ +N P +   +++E+A+      
Sbjct: 93  GVGPAIQDGFYYDTDNKSGQISNDDLPRIEEEMKKIVKENHPCIREEISKEEALELFKDD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
               +         +     G     LC G HV STG I + +++   ++     R  + 
Sbjct: 153 PYKVELISEHAEDGLTVYRQGEF-VDLCRGPHVPSTGRIQVFHLL---NVAGAYWRGNSD 208

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                R +     +K K L ++LK  +     R
Sbjct: 209 NAMMQRVYGTAWFDK-KDLKAYLK-RREEAKER 239


>gi|203284615|ref|YP_002222355.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
 gi|238690570|sp|B5RMR3|SYT_BORDL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|201084058|gb|ACH93649.1| threonyl-tRNA synthetase [Borrelia duttonii Ly]
          Length = 583

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 15/197 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K I+  +L  IE  + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLELFPNTKIAIGPPI-KDGFYYDFDFEKHISEDDLLLIEHKMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
              P +  ++ RE A+                 V            + LC G HV +  +
Sbjct: 73  TGSPFIREVITREQALVLFKDEPYKIDLIQNFDVTDEITIYKSHKFTDLCRGPHVDNMNK 132

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +        +SI     R               +++ L  +   L  ++ ++   + ++ 
Sbjct: 133 LDP-KAFKLTSIAGAYWR------------GDERNKMLSRIYGTLWNNEKDLKAYL-KLQ 178

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE +K       R+L L
Sbjct: 179 EEIKKRDHRKLGRELNL 195


>gi|221639813|ref|YP_002526075.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
 gi|254783534|sp|B9KKC7|SYT_RHOSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|221160594|gb|ACM01574.1| Threonyl-tRNA synthetase [Rhodobacter sphaeroides KD131]
          Length = 646

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 18/202 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  +  +G  +D    +  T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQELWPDVKVTIGPVV-ANGWYYDFDRDETFTPEDLGAIEKRMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
               V T +  R  AIA       G  +   +     E +   ++       LC G H+ 
Sbjct: 133 AREAVKTELWERARAIAYYEER--GEPFKVELVQAIPEDQSIRMYWHGGWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
            TG++      ++S   +     R     G  A   L             LK     +  
Sbjct: 191 HTGQVPADAFKLMS---VAGAYWR-----GDSANKQLQRIYGVAFKTRDELKAYLHMLEE 242

Query: 759 RVEEIWEEY-RKLQLIHAKRKL 779
             +    +  R+++L H + + 
Sbjct: 243 AAKRDHRKLGREMELFHLQEEA 264


>gi|134098578|ref|YP_001104239.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|291008224|ref|ZP_06566197.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911201|emb|CAM01314.1| threonyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 674

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 60/179 (33%), Gaps = 32/179 (17%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            E+  V     + R  +   HSA H+L  A+  +        G  +  DG  +D     P
Sbjct: 47  VEVEAVAACTEEGRSVIR--HSAAHVLAQAVQQLHAEAKLGIGPPV-RDGFYYDFDVEHP 103

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN------------- 673
            T  +L+++E  +  II        R ++  +A       L G  Y              
Sbjct: 104 FTPEDLQALEKRMKQIIKSGQKFSRRRLDSVEAARE---ELAGEPYKLELVDLKSGSDEV 160

Query: 674 DRVRVVSVEYEDGGVHSS----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           D   V+ V   D  V+ +           LC G HV  T  I    ++    + A   R
Sbjct: 161 DTSEVMEVGGGDLTVYDNVDRHGEVVWGDLCRGPHVPHTRYIPAFKLM---RVAAAYWR 216


>gi|313681237|ref|YP_004058975.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154097|gb|ADR32775.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 602

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 18/196 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  +  +G  +D   ++ I   +LK+IE  + DI  
Sbjct: 40  IRHSCAHLMAEAIKALYTDAKFFVGPTV-KEGFYYDFKVNETIGEDDLKTIEKKMLDIAK 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               +    + + +A A  A   L     DR+   +V     G     LC G H+ S G 
Sbjct: 99  GKEKIERYEITKNEARAKFANDHLKQAVMDRIPSDTVTIYKQGEF-EDLCRGPHLPSVGL 157

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +   S                A      ++E L  +       + ++   ++++ 
Sbjct: 158 LRYFKLTKISG---------------AYLGGDSKNEMLTRIYGIAFADKESLKAYLDQMA 202

Query: 765 E-EYRKLQLIHAKRKL 779
           E E R  + I A+ KL
Sbjct: 203 EAEKRDHRKIGAEMKL 218


>gi|291515296|emb|CBK64506.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Alistipes shahii
           WAL 8301]
          Length = 604

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 80/206 (38%), Gaps = 30/206 (14%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+++HLL  AL  +        G  I  +G  +DV    PIT A+L +IE+ + ++
Sbjct: 23  HAFWHTSSHLLAEALEALYPGIKFGIGPAI-ENGFYYDVDSPTPITEADLPTIENKMVEL 81

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCG 695
                 ++ R + + +A+ +        K  D+ +V  +   + G  S       + LC 
Sbjct: 82  SRNKEALLRREVPKAEALKT-----FTEK-GDQYKVELITDLEDGTISFYTNGAFTDLCR 135

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G H+ +      +  +  +S+     R               +++ L  +       + +
Sbjct: 136 GPHIPN---TGYIKALKLTSVAGAYWR------------GNEKNKMLTRIYGI-SFPKKS 179

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
           ++     + EE +K       + L+L
Sbjct: 180 MLDEYLAMMEEAKKRDHRKLGKDLEL 205


>gi|307702092|ref|ZP_07639099.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307707425|ref|ZP_07643907.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616377|gb|EFN95568.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
 gi|307616579|gb|EFN95769.1| threonyl-tRNA synthetase [Streptococcus mitis NCTC 12261]
          Length = 647

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|163840754|ref|YP_001625159.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
 gi|162954230|gb|ABY23745.1| threonyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209]
          Length = 700

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 75/218 (34%), Gaps = 29/218 (13%)

Query: 562 RGILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
              L     +   TID  +   +   HSA H++  A+  +        G  IT DG  FD
Sbjct: 66  DQPLPANAQVDAVTIDSADGLDVLR-HSAAHVMAQAVQQLSQDAKLGIGPYIT-DGFYFD 123

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN-- 673
               +P T  +LK +E  +  I+  N     R+++  +AI +         L+G K    
Sbjct: 124 FDVDEPFTPEDLKQLEKMMLKIVNANQRFQRRVVSETEAIEAMKDEPYKLELIGLKGGSA 183

Query: 674 ------------DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                         + + +    D  V    LC G H+ +T  I   Y ++ SS  A   
Sbjct: 184 EAAEGASQEVGAGELTIYANLDRDENVVWQDLCRGPHLPNTKLISNAYALTRSS--AAYW 241

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           R     G +A   L             LK  Q  +   
Sbjct: 242 R-----GDQANKQLQRIYGTAWPTKDALKAYQERIAEA 274


>gi|39884|emb|CAA28636.1| unnamed protein product [Bacillus subtilis]
          Length = 180

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 3/145 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      I  R  +  + ++ +  +        + HSA HLL  A+  I    V 
Sbjct: 36  KKSLAGKLNGKEIDLRTPINEDGTVEIITEGSEEGLQIMRHSAAHLLAQAIKRIY-KDVK 94

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
                +  +G  +DV   + IT  +L  IE  +  I+  NLP+V + ++RE+A A    A
Sbjct: 95  FGVGPVIENGFYYDVEMDEAITPEDLPKIEKEMKKIVNANLPIVRKEVSREEAKARF--A 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSS 691
            +G      +     E E   ++  
Sbjct: 153 EIGDDLKLELLDAIPEGETVSIYEQ 177


>gi|315222497|ref|ZP_07864386.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
 gi|315188183|gb|EFU21909.1| threonyl-tRNA synthetase [Streptococcus anginosus F0211]
          Length = 650

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGSTTFDIAQSISNSLA------KKALAGKFNGKLIDTTRPITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNAAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + ++ A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDQAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|228997455|ref|ZP_04157073.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
 gi|229005099|ref|ZP_04162823.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228756201|gb|EEM05522.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock1-4]
 gi|228762288|gb|EEM11216.1| Threonyl-tRNA synthetase [Bacillus mycoides Rock3-17]
          Length = 641

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H++ H+L  A+  I G  V      +  +G  +D+     I   +L  +E  + +I+ +
Sbjct: 76  RHTSAHILAQAVKRIYGD-VKLGVGPVIENGFYYDMDLPSSIGIEDLPKLEKEMKNIVNE 134

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
           NL +    + R++A        +       +     E E   ++       LC G H+ S
Sbjct: 135 NLKIERVEITRKEAEKLFQD--VNDHLKLELLEAIPENEIVTIYKQGEFVDLCRGPHLPS 192

Query: 702 TGEIMLLYIVSESS 715
           TG +    +   S 
Sbjct: 193 TGYLKAFQLTHVSG 206


>gi|312863291|ref|ZP_07723529.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
 gi|311100827|gb|EFQ59032.1| threonine--tRNA ligase [Streptococcus vestibularis F0396]
          Length = 648

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 28/258 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRTITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV STG I + +++   ++     R  +      R +     +K K L ++LK       
Sbjct: 185 HVPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRIYGTAWFDK-KDLKAYLK------- 233

Query: 758 GRVEEIWEE-YRKLQLIH 774
            R+EE  E  +RKL    
Sbjct: 234 -RLEEAKERDHRKLGKEL 250


>gi|224373363|ref|YP_002607735.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
 gi|254783530|sp|B9L5U7|SYT_NAUPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223589770|gb|ACM93506.1| threonyl-tRNA synthetase [Nautilia profundicola AmH]
          Length = 611

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA HL+  A+  +        G  I  +G  +D+    PIT  +LK+IE  +  +  
Sbjct: 43  IRHSAAHLMAQAIKELYPEAKFYVGPTI-ENGFYYDLKTETPITDKDLKNIEKKMKALAK 101

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +   +    ++ E+A        L     D +   +V     G     LC G HV +T  
Sbjct: 102 KKFDITRYEISMEEAREKFKNDELKQAVLDMIPGDTVSIYKQGDF-EDLCRGPHVPNTKY 160

Query: 705 IMLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           +  + +   +       S    + R+      T +  + +L   +E  K 
Sbjct: 161 LHNVKLQKVAGAYLGGDSKNEMLTRVYGTAFATKEALQEYLKMLEEAAKR 210


>gi|170581994|ref|XP_001895931.1| hypothetical protein Bm1_22375 [Brugia malayi]
 gi|158596974|gb|EDP35222.1| hypothetical protein Bm1_22375 [Brugia malayi]
          Length = 75

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVP 45
          +   IR +FLE+F+++ H  +PSSS+IP +D ++ F N+GM  
Sbjct: 26 SAQQIRLSFLEYFKEHNHTYVPSSSVIPEDDSSVTFVNAGMNQ 68


>gi|284031290|ref|YP_003381221.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283810583|gb|ADB32422.1| threonyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 673

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 32/191 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  +  +G  +D     P T  +L  +E  +  II 
Sbjct: 75  IRHSTAHVLAQAVQELFPEAKLGIGPPV-ENGFYYDFDVPTPFTPDDLGKLEKKMQQIIK 133

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-------------------TKYNDRVRVVSVEYED 685
           +      R+++ +DA    AA                             + +      D
Sbjct: 134 ERQRFSRRVVSDDDARTELAAEPYKLELIGIKGSAADAAEGASVEVGGGELTIYDNVRRD 193

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLM 736
             V    LC G HV +TG +    ++  +   A  R         RI   T   +R  L 
Sbjct: 194 DSVAWKDLCRGPHVPATGYLGNFKLMRTA--AAYWRGSEKNPQLQRIYG-TAWESRDELK 250

Query: 737 GQDEKLKSLAS 747
               +L+  A 
Sbjct: 251 AYLTRLEEAAK 261


>gi|94989937|ref|YP_598037.1| threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
 gi|123258050|sp|Q1JI30|SYT_STRPD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94543445|gb|ABF33493.1| Threonyl-tRNA synthetase [Streptococcus pyogenes MGAS10270]
          Length = 647

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I   +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFDIAESISKSLA------KKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAY 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +  +     G  I              I++ +L  IE  +  I
Sbjct: 69  EVLRHSAAHLFAQAAKRLFPNLHLGVGPAIAEGFYYDTDNAEGQISNEDLPCIEAEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           + +N P +   + +E+A+          +  N+        Y  G      LC G HV S
Sbjct: 129 VTENYPCIREEVTKEEALELFKDDPYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPS 186

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I + +++   ++     R
Sbjct: 187 TGRIQVFHLL---NVAGAYWR 204


>gi|225016667|ref|ZP_03705859.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
 gi|224950631|gb|EEG31840.1| hypothetical protein CLOSTMETH_00576 [Clostridium methylpentosum
           DSM 5476]
          Length = 646

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 14/194 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D   ++G G+       +    G     A   R  +  +  + +        +
Sbjct: 15  EPGVSIADIAKSLGMGL------YKAACAGKIGGKACDLRTPVTEDCEVEILTFDNVDGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+A+H+L  A+  +  +     G  +  +G  +D+ + K  T  +L  IE  +  I
Sbjct: 69  HAFWHTASHILAQAVKRLYPNAKLAIGPAV-ENGFYYDIENEKGFTPEDLTKIEAEMKKI 127

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSS----ALCGGT 697
           +   L +    +  ++A+        G  Y   +     E  E    +       LC G 
Sbjct: 128 VKSGLELECFSLEPDEAVK--LMQEAGEPYKVELAKEHAEKGEKISFYKQGEFVDLCAGP 185

Query: 698 HVSSTGEIMLLYIV 711
           H+ S   +  + + 
Sbjct: 186 HLMSVSPVKAIKLT 199


>gi|313112983|ref|ZP_07798626.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624703|gb|EFQ08015.1| threonyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 594

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 573 LTIDY--QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITS 629
             +D   Q++    I H+A H++  A+  +        G   T +G  +DV    + ++ 
Sbjct: 8   GHVDECPQDQELHVIRHTAAHIMAQAIKRLYPQADFAFGPA-TENGFYYDVDLGDQKLSD 66

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG---TKYNDRVRVVSVEYEDG 686
            +L +IE  +  I+ +NLP+   I+ R +A+                D        +   
Sbjct: 67  EDLANIEKEMRKIVKENLPIKPFILPRAEAVKLMEERKENYKIEHMADLADETEFSFFQQ 126

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G +   +C G H++ T  +    I  +S 
Sbjct: 127 GEYVD-MCIGPHLTYTKALKAFKITQQSG 154


>gi|294010776|ref|YP_003544236.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
 gi|292674106|dbj|BAI95624.1| threonyl-tRNA synthetase [Sphingobium japonicum UT26S]
          Length = 668

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS------KPITSAELKSIEDNV 639
            H   H+L  A+  +        G   T DG  +D          +P T  +L +IE  +
Sbjct: 76  RHDFAHVLAEAVQALFPGTQITFGPA-TDDGFYYDFAPPLVEGKPRPFTEEDLPAIEAKM 134

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-----ALC 694
            +IIA + P+   +  RED IA   A   G  +         E E+  V+ S      +C
Sbjct: 135 REIIAADKPLRREVWKREDLIARWRAG--GETFKAEWAAELPEGEELTVYWSGGDWLDMC 192

Query: 695 GGTHVSSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G H++STG  +     +   S          A + RI   TG   R  L     +L+  
Sbjct: 193 RGPHLASTGKLDPAAFKLTRVSGAYWRGDQKNAMLSRIYG-TGWLNRKQLDAHLTRLEEA 251

Query: 746 AS 747
           A 
Sbjct: 252 AR 253


>gi|322377382|ref|ZP_08051873.1| threonine--tRNA ligase [Streptococcus sp. M334]
 gi|321281582|gb|EFX58591.1| threonine--tRNA ligase [Streptococcus sp. M334]
          Length = 647

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|117618710|ref|YP_855250.1| hypothetical protein AHA_0708 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560117|gb|ABK37065.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 282

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 91/269 (33%), Gaps = 46/269 (17%)

Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIR 540
           + +  +S V    Q+   V    SG    +V D TPF+ ++     Q GD G    +G  
Sbjct: 1   MPHTRASFVLGHHQEQASVLFCQSGDTSLLVTDLTPFHPQSHLWPDQPGDVGTVHWEGGD 60

Query: 541 LQI-------------------TDVQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQN 579
             +                     V++ AEG    V H +     L     + L +D + 
Sbjct: 61  TTVGPCRMGTISPDGELFVDQAIPVKRGAEGWRFVVVHPLAGHCALPVGSQVTLRVDAET 120

Query: 580 RRQLSINHSATHLLHH------------------ALSTILGSHVSQNGSCITPDGLRFDV 621
           R  LS+ HS  HL                     AL       ++   S + P G R   
Sbjct: 121 RHALSLGHSGCHLAALALNRALMPYWRKEVSERDALDQPDFDRLAIQTSRVEPMGSREQY 180

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
              K +    + S E  + D+    + V  ++ +   + A    +  G    D  R    
Sbjct: 181 RIGKSLRKKGVNS-EALLADLAQIEVQVNRQLADWVASGADIRRSRAGEAIID-SRYWHC 238

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
             E  G   +  CGGTHV S  E+  + +
Sbjct: 239 SLE--GREVTIPCGGTHVGSLAELGQVQV 265


>gi|153950997|ref|YP_001397450.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166223330|sp|A7H1S0|SYT_CAMJD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|152938443|gb|ABS43184.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 602

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 18/197 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFCVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G HV +T  
Sbjct: 99  AKIEISKYKITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEF-EDLCRGPHVPNTKF 157

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           +    +               + G  A      + E L  +       + ++   +  I 
Sbjct: 158 LRFFKLTR-------------VAG--AYLGGDEKREMLTRIYGTAFADKESLKEYL-AII 201

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE +K        +L+L
Sbjct: 202 EEAKKRDHRKLGIELKL 218


>gi|48477666|ref|YP_023372.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
 gi|48430314|gb|AAT43179.1| threonyl-tRNA synthetase [Picrophilus torridus DSM 9790]
          Length = 710

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 10/173 (5%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           + + HSA H+L +A+  +   +   N S    +G  +D    +PI++ +   IED + DI
Sbjct: 106 IILRHSAAHVLANAVVELY--NALPNTSNENQEGFYYDFDM-QPISTDDFPKIEDKMKDI 162

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I +N+ +    M ++D +           K N      +  Y +G  +    C G HV S
Sbjct: 163 IDKNIKIEKYTMKKDDILNLFKNNPYKIDKINKNADDDATVYREGDYY--EFCRGPHVPS 220

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           TG I    ++S   I +     E I G+R            K L  FLK  + 
Sbjct: 221 TGFIKAFKLLS---IASTTYNGE-INGKRMIRIYGTAFPDKKMLNEFLKNREE 269


>gi|313890276|ref|ZP_07823910.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121381|gb|EFR44486.1| threonine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026]
          Length = 648

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 14/182 (7%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTI-DYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G F    +     L  + ++ +   D+++   +   HSA HL   A   +     
Sbjct: 33  KKALAGKFNDQLVDTNRPLVEDGNIEIVTPDHEDAFDILR-HSAAHLFAQAAKRLFPDIH 91

Query: 606 SQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
              G  I  DG  +D  + +  I++ +L  IE+ +  I+ +N P + + +++E+A+    
Sbjct: 92  LGVGPAI-ADGFYYDTDNQAGQISNEDLPRIEEEMKKIVKENHPCIRQEVSKEEALEIFK 150

Query: 665 AALLGT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720
                     +++D    +++ Y  G      LC G HV STG I + +++   ++    
Sbjct: 151 DDPYKIELINEHSDDAAGLTI-YRQGEF--VDLCRGPHVPSTGRIQVFHLL---NVAGAY 204

Query: 721 RR 722
            R
Sbjct: 205 WR 206


>gi|261368006|ref|ZP_05980889.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
 gi|282569994|gb|EFB75529.1| threonine--tRNA ligase [Subdoligranulum variabile DSM 15176]
          Length = 596

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 15/175 (8%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
             + H+A H++  A+  +        G   T +G  +DV      +T  +L +IE  +  
Sbjct: 20  HVLRHTAAHIMAQAIKRLYPEADFAFGPA-TENGFYYDVDLGDTKLTDEDLAAIEKEMRK 78

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           I  +NLP+   I+ R++A+               +D        +   G +   +C G H
Sbjct: 79  ICKENLPIKPFILPRDEALKLMQERQEHYKIEHMSDLADETEFSFFQQGEYVD-MCIGPH 137

Query: 699 VSSTGEIMLLYIVSESSI-------RAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           ++ T  +    I  +S            + RI  +    Q        Q ++ + 
Sbjct: 138 LTYTKALKAFKITQQSGAYWKNDKENKMLTRINGVAFHNQEELEEWEKQQQEARE 192


>gi|87198229|ref|YP_495486.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|123749972|sp|Q2GBX1|SYT_NOVAD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87133910|gb|ABD24652.1| Ser-tRNA(Thr) hydrolase [Novosphingobium aromaticivorans DSM 12444]
          Length = 664

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 19/177 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIA 644
            H   H+L  A+  +        G   T DG  +D     +P T  +L +IE  +  IIA
Sbjct: 76  RHDYAHVLAEAVQALFPGTQITFGPS-TDDGFYYDFAPKDRPFTDEDLPAIEAEMRKIIA 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHV 699
            N P+   + +RE  I+       G  +         E E+      G     +C G H+
Sbjct: 135 ANKPLRREVWSREQLISRWKQQ--GESFKAEWAAELPENEELTVYWSGDDWLDMCRGPHL 192

Query: 700 SSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            STG  +     +   S          A + R+   TG   +  L     +L+  A 
Sbjct: 193 PSTGKLDPNAFKLTRVSGAYWRGDQKNAMLSRVYG-TGWLNKKQLDAHLTRLEEAAK 248


>gi|307705352|ref|ZP_07642214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
 gi|307621139|gb|EFO00214.1| threonyl-tRNA synthetase [Streptococcus mitis SK597]
          Length = 647

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRTITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|77463957|ref|YP_353461.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
 gi|123757748|sp|Q3J0X4|SYT_RHOS4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|77388375|gb|ABA79560.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 646

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 18/202 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  +  +G  +D    +  T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQELWPDVKVTIGPVV-ANGWYYDFDREETFTPEDLGAIEKRMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
               V T +  R  AIA       G  +   +     E +   ++       LC G H+ 
Sbjct: 133 AREAVKTELWERARAIAYYEER--GEPFKVELVQAIPEDQSIRMYWHGGWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
            TG++      ++S   +     R     G  A   L             LK     +  
Sbjct: 191 HTGQVPADAFKLMS---VAGAYWR-----GDSANKQLQRIYGVAFKTRDELKAYLHMLEE 242

Query: 759 RVEEIWEEY-RKLQLIHAKRKL 779
             +    +  R+++L H + + 
Sbjct: 243 AAKRDHRKLGREMELFHLQEEA 264


>gi|218130015|ref|ZP_03458819.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
 gi|217987818|gb|EEC54144.1| hypothetical protein BACEGG_01598 [Bacteroides eggerthii DSM 20697]
          Length = 646

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 16/176 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +VL      + + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PISEDAEVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +      +L +IE  + +++A+   VV   +++ DA+        G  Y   + +  +E
Sbjct: 109 GEATIKEADLPAIEKKMAELVAKKEAVVRESISKTDALKMFGDR--GETYKCEL-ISELE 165

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 ++      LC G H+ +T  I  + + S +         R  + RI  IT
Sbjct: 166 DGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|327330301|gb|EGE72050.1| threonine--tRNA ligase [Propionibacterium acnes HL097PA1]
          Length = 689

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 72/206 (34%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L   E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSEFEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANAFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREDLAAYQQRIKEA 257


>gi|148988673|ref|ZP_01820106.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|147925874|gb|EDK76949.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
          Length = 600

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|212696508|ref|ZP_03304636.1| hypothetical protein ANHYDRO_01046 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676493|gb|EEB36100.1| hypothetical protein ANHYDRO_01046 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 230

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 18/206 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  +GD    I +G  L  + V     G  +     E     ++  +V   D + +  
Sbjct: 16  EKGVSVGDVTKDISEG--LFRSAVGAVVNGKVM--GYAEPINEDSDFKVVKFEDKEGKE- 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H+++HL+  A+  +        G  I  +G  +D+         +L  IE  + +I
Sbjct: 71  -IFWHTSSHLMAAAIKEMWPEAKFAIGPAID-NGFYYDIDLEHRFVPEDLPKIEAKMKEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGG 696
             ++L +V + ++R +A+          +Y   +     E      YE G      LC G
Sbjct: 129 AKKDLKMVRKEISRAEALEYF--KKENQEYKVELIEDLPEDELITLYEMGDNVFVDLCKG 186

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            H+ ST  I  + +   +SI     R
Sbjct: 187 PHLLSTKSIKAVKL---NSIAGAYWR 209


>gi|317476770|ref|ZP_07936013.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906945|gb|EFV28656.1| threonyl-tRNA synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 646

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 16/176 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +VL      + + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PISEDAEVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +      +L +IE  + +++A+   VV   +++ DA+        G  Y   + +  +E
Sbjct: 109 GEATIKEADLPAIEKKMAELVAKKEAVVRESISKTDALKMFGDR--GETYKCEL-ISELE 165

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 ++      LC G H+ +   I  + + S +         R  + RI  IT
Sbjct: 166 DGHITTYTQGAFTDLCRGPHLMTIAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|313837083|gb|EFS74797.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA2]
 gi|314927888|gb|EFS91719.1| threonyl-tRNA synthetase [Propionibacterium acnes HL044PA1]
 gi|314971856|gb|EFT15954.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA3]
          Length = 689

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 74/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVHRNGEVAWKDLCRGPHVPSTKYLANAFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L+   +++K  
Sbjct: 233 LQRIYG-TAWASREDLVAYQQRIKEA 257


>gi|149916340|ref|ZP_01904860.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
 gi|149809794|gb|EDM69646.1| threonyl-tRNA synthetase [Roseobacter sp. AzwK-3b]
          Length = 663

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  +G  +D     P T  +L  IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQELWPDVKVTIGPVI-ENGWYYDFDRKDPFTPEDLGVIEKKMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
              PV T I +R  A+     +  G  +   +       E   ++       LC G H+ 
Sbjct: 133 LRDPVRTEIWDRARAVKHYEDS--GEPFKVELIEAIPGTEPLRMYWHGPWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
           +TG++      ++S   +     R
Sbjct: 191 NTGQVPADAFKLMS---VAGAYWR 211


>gi|25010739|ref|NP_735134.1| threonyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77410759|ref|ZP_00787117.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
 gi|73919827|sp|Q8E693|SYT_STRA3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|23095093|emb|CAD46328.1| theronyl-tRNA synthetase [Streptococcus agalactiae NEM316]
 gi|77163138|gb|EAO74091.1| threonyl-tRNA synthetase [Streptococcus agalactiae CJB111]
          Length = 647

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 6/213 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGQLIDTTRAIEEDGSIEIVTPDHEDALGVLRHSAAHLFAQAAKRLFPDLCL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           S  I++ +L  +E+ +  I+ +N P +   +++E+A+      
Sbjct: 93  GVGPAIQDGFYYDTDNKSGQISNDDLPRVEEEMKKIVKENHPCIREEISKEEALELFKDD 152

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
               +         +     G     LC G HV STG I + +++   ++     R  + 
Sbjct: 153 PYKVELISEHAEDGLTVYRQGEF-VDLCRGPHVPSTGRIQVFHLL---NVAGAYWRGNSD 208

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                R +     +K K L ++LK  +     R
Sbjct: 209 NAMMQRVYGTAWFDK-KDLKAYLK-RREEAKER 239


>gi|328907347|gb|EGG27113.1| threonine--tRNA ligase [Propionibacterium sp. P08]
          Length = 684

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 74/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 49  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 107

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 108 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 167

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 168 SVEVGGGELTIYDNVHRNGEVAWKDLCRGPHVPSTKYLANAFALTKFSAAYWKGDQANDQ 227

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L+   +++K  
Sbjct: 228 LQRIYG-TAWASREDLVAYQQRIKEA 252


>gi|167769368|ref|ZP_02441421.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
 gi|167668336|gb|EDS12466.1| hypothetical protein ANACOL_00694 [Anaerotruncus colihominis DSM
           17241]
          Length = 635

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 4/135 (2%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H+A+H+L  A+  +        G  +  +G  +D    KP T  +L +IE  +  I
Sbjct: 70  HAFWHTASHVLAQAVMRLYPDTKYTIGPAV-ENGFYYDFDVEKPFTPEDLAAIEKEMAAI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV--VSVEYEDGGVHSSALCGGTHVS 700
           +   + +    ++   A           +  D+       V +      +  LC G H+ 
Sbjct: 129 VKSGVELDRFELDAPQARELMKDQPYKLELIDKHAASGEKVSFYRQNDFTD-LCAGPHLM 187

Query: 701 STGEIMLLYIVSESS 715
           +   +  + ++  + 
Sbjct: 188 NVAPLKAIKLLQSTG 202


>gi|209523462|ref|ZP_03272017.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
 gi|209496204|gb|EDZ96504.1| threonyl-tRNA synthetase [Arthrospira maxima CS-328]
          Length = 622

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 74/242 (30%), Gaps = 47/242 (19%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+  H+L  A+  +        G   T  G  +D    +P T  +L  I   +  II
Sbjct: 24  RIRHTCAHILAMAVQKLFPETKVAIGPT-TDTGFYYDFDRKEPFTPEDLGQITKEMKRII 82

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY-------------------NDRVRVVSVEYE 684
             NLPV+   +NRE   A         K                     D  R    E E
Sbjct: 83  KGNLPVIREEVNREQIRAEIEKLNEPLKLEILDSIPETETITRYFIGSPDMGRTNHPEVE 142

Query: 685 DGGV---------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
              +             LC G H++STGEI     ++  S+     R     G      L
Sbjct: 143 PSLISPVVIPTQEFWWDLCAGPHLNSTGEINPDA-LALESVAGAYWR-----GDETLPQL 196

Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
                           +   +     E +++ ++       RKL   ++  S  + A   
Sbjct: 197 QRIYGTAWE-------TPEEL-----EYYQQQKEEAKKRDHRKLGQELDLFSIQEDAGGG 244

Query: 796 FM 797
            +
Sbjct: 245 LV 246


>gi|103486185|ref|YP_615746.1| threonyl-tRNA synthetase [Sphingopyxis alaskensis RB2256]
 gi|123380057|sp|Q1GVA9|SYT_SPHAL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|98976262|gb|ABF52413.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sphingopyxis
           alaskensis RB2256]
          Length = 667

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 21/179 (11%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT---HSKPITSAELKSIEDNVNDI 642
            H   H+L  A+ T+        G   T DG  +D        P    EL  IE+ +  I
Sbjct: 76  RHDYAHVLAEAVQTLFPGTQITFGPA-TSDGFYYDFAPTAEHGPFRDEELPLIEEEMRRI 134

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           IA + P+   + +R+  IA       G  +           E+      G     +C G 
Sbjct: 135 IAADKPLRREVWDRDALIARWKKD--GETFKAEWAAELPAGEEISVYWSGDDWMDMCRGP 192

Query: 698 HVSSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           H++STG  +     +   S          A + RI   TG   R  L     +L+  A 
Sbjct: 193 HLASTGKLDPAAFKLTRVSGAYWRGDQKNAQLSRIYG-TGWLNRKQLAEHLVRLEEAAK 250


>gi|289167501|ref|YP_003445770.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
 gi|288907068|emb|CBJ21902.1| Threonyl-tRNA synthetase, threonine-tRNA ligase [Streptococcus
           mitis B6]
          Length = 647

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 74/206 (35%), Gaps = 20/206 (9%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVND 641
             + HSA HL   A   +        G  I  DG  +D  +S   I++ +L  IE+ +  
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAI-EDGFYYDTDNSAGQISNEDLPRIEEEMQK 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGG 696
           I+ +N P +   + +++A            Y   +     E E G           LC G
Sbjct: 128 IVKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV STG I + +++    +     R
Sbjct: 184 PHVPSTGRIQIFHLL---HVAGAYWR 206


>gi|225857248|ref|YP_002738759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
 gi|254783542|sp|C1CLX1|SYT_STRZP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225725171|gb|ACO21023.1| threonyl-tRNA synthetase [Streptococcus pneumoniae P1031]
          Length = 647

 Score = 64.7 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|325269899|ref|ZP_08136509.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
 gi|324987872|gb|EGC19845.1| threonine--tRNA ligase [Prevotella multiformis DSM 16608]
          Length = 649

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +  +G  +DV     + I+  +   IE+ + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ENGFFYDVMPADGQTISENDFPKIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N PVV   +++ DAI    A   G +Y        +E      ++      LC G
Sbjct: 128 ELAKKNEPVVRHDVSKADAIKEFTAD--GQEYKVEHIEQDLEDGTISTYTQGHFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+ STG I  + I S +         R  + RI  IT
Sbjct: 186 PHLVSTGAIKAIKITSVAGAFWRGDAKREQMTRIYGIT 223


>gi|322411327|gb|EFY02235.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 6/177 (3%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +  +   
Sbjct: 33  KKALAGKFNGQLIDTTRAIEEDGSIEIVTPDHEDAYDVLRHSAAHLFAQAAKRLFPNLHL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              I++ +L  IE  +  I+ +N P +   + +E+A+      
Sbjct: 93  GVGPAIAEGFYYDTDNADGQISNEDLPRIEAEMQKIVKENYPCIREEVTKEEALELFKDD 152

Query: 667 LLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +  N+        Y  G      LC G HV STG I +  ++   ++     R
Sbjct: 153 PYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPSTGRIQVFRLL---NVAGAYWR 204


>gi|168493529|ref|ZP_02717672.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
 gi|183576436|gb|EDT96964.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|225855059|ref|YP_002736571.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
 gi|237649181|ref|ZP_04523433.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974]
 gi|237822258|ref|ZP_04598103.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974M2]
 gi|254783541|sp|C1CFK0|SYT_STRZJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225723844|gb|ACO19697.1| threonyl-tRNA synthetase [Streptococcus pneumoniae JJA]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|221232374|ref|YP_002511527.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
 gi|254783539|sp|B8ZM32|SYT_STRPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220674835|emb|CAR69409.1| threonyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|194397191|ref|YP_002038247.1| threonyl-tRNA synthetase [Streptococcus pneumoniae G54]
 gi|238690846|sp|B5E6Q8|SYT_STRP4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194356858|gb|ACF55306.1| threonyl-tRNA synthetase (thrS) [Streptococcus pneumoniae G54]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|148984063|ref|ZP_01817358.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923352|gb|EDK74465.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800452|emb|CBW33086.1| threonyl-tRNA synthetase [Streptococcus pneumoniae OXC141]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|148242044|ref|YP_001227201.1| threonyl-tRNA synthetase [Synechococcus sp. RCC307]
 gi|147850354|emb|CAK27848.1| Threonyl-tRNA synthetase [Synechococcus sp. RCC307]
          Length = 609

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 3/143 (2%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + L I HS +H++  A+  +  +     G   T  G  +D  +  P T A+LK+I+  + 
Sbjct: 30  QLLKIRHSMSHVMAMAVQQLFPNARVTIGPW-TETGFYYDFDNPDPFTEADLKAIKKGMI 88

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHV 699
            II Q LP+    ++R +A     A     K          +     G     LC G HV
Sbjct: 89  KIINQKLPLQRVEVSRAEAETRIKAQNEPYKLEILEGLQEPITLYTLGEKWWDLCAGPHV 148

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
             TG++         S+     R
Sbjct: 149 EHTGQLNA-KAFELESVAGAYWR 170


>gi|148994898|ref|ZP_01823919.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|148997679|ref|ZP_01825243.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149006698|ref|ZP_01830384.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|149021279|ref|ZP_01835525.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168483499|ref|ZP_02708451.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|168487280|ref|ZP_02711788.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|168488656|ref|ZP_02712855.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|168491490|ref|ZP_02715633.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|168575182|ref|ZP_02721145.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|169834472|ref|YP_001695022.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|225859387|ref|YP_002740897.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225861459|ref|YP_002742968.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229236|ref|ZP_06962917.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254509|ref|ZP_06978095.1| threonyl-tRNA synthetase [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|307068259|ref|YP_003877225.1| threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|307127841|ref|YP_003879872.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|238688351|sp|B1I703|SYT_STRPI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783538|sp|C1C8M1|SYT_STRP7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783543|sp|C1CSP6|SYT_STRZT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|147756178|gb|EDK63220.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147761613|gb|EDK68577.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147926966|gb|EDK78011.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68]
 gi|147930380|gb|EDK81364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|168996974|gb|ACA37586.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043101|gb|EDT51147.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00]
 gi|183569836|gb|EDT90364.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00]
 gi|183572780|gb|EDT93308.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP195]
 gi|183574162|gb|EDT94690.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04]
 gi|183578687|gb|EDT99215.1| threonyl-tRNA synthetase [Streptococcus pneumoniae MLV-016]
 gi|225720074|gb|ACO15928.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 70585]
 gi|225727271|gb|ACO23122.1| threonyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14]
 gi|306409796|gb|ADM85223.1| Threonyl-tRNA synthetase [Streptococcus pneumoniae AP200]
 gi|306484903|gb|ADM91772.1| threonyl-tRNA synthetase [Streptococcus pneumoniae 670-6B]
 gi|327389816|gb|EGE88161.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
 gi|332072464|gb|EGI82947.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
 gi|332072798|gb|EGI83279.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
 gi|332073965|gb|EGI84443.1| threonyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|15901467|ref|NP_346071.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|111657539|ref|ZP_01408280.1| hypothetical protein SpneT_02001261 [Streptococcus pneumoniae
           TIGR4]
 gi|149011514|ref|ZP_01832761.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|303253984|ref|ZP_07340104.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|303258557|ref|ZP_07344537.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|303262647|ref|ZP_07348587.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|303263586|ref|ZP_07349508.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
 gi|303266970|ref|ZP_07352845.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|303269866|ref|ZP_07355610.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|22654131|sp|Q97PI4|SYT_STRPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14973120|gb|AAK75711.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TIGR4]
 gi|147764504|gb|EDK71435.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75]
 gi|301802334|emb|CBW35088.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV200]
 gi|302599072|gb|EFL66098.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS455]
 gi|302636203|gb|EFL66698.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292]
 gi|302640058|gb|EFL70513.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293]
 gi|302640601|gb|EFL71004.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS458]
 gi|302643487|gb|EFL73759.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS457]
 gi|302646624|gb|EFL76849.1| threonyl-tRNA synthetase [Streptococcus pneumoniae BS397]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|298503373|ref|YP_003725313.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238968|gb|ADI70099.1| threonyl-tRNA synthetase [Streptococcus pneumoniae TCH8431/19A]
          Length = 660

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 28  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 81

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 82  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 141

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 142 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 197

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 198 HVPSTGRIQIFHLL---HVAGAYWR 219


>gi|182684576|ref|YP_001836323.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
 gi|182629910|gb|ACB90858.1| threonyl-tRNA synthetase [Streptococcus pneumoniae CGSP14]
          Length = 660

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 28  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 81

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 82  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 141

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 142 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 197

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 198 HVPSTGRIQIFHLL---HVAGAYWR 219


>gi|307707001|ref|ZP_07643798.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
 gi|307617527|gb|EFN96697.1| threonyl-tRNA synthetase [Streptococcus mitis SK321]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|239939977|ref|ZP_04691914.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|239986461|ref|ZP_04707125.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379]
          Length = 653

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK+IE  + +I  
Sbjct: 66  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAIEKKMQEIQK 124

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKY---NDRVRVVSVEYEDGGVHS------ 690
           +      R+++ EDA            L+G K    +D    V V   +  ++       
Sbjct: 125 RGQKFSRRVVSDEDAREELANEPYKLELIGIKGSASSDDGADVEVGGGELTIYDNLDAKT 184

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 185 GELCWKDLCRGPHLPTTRFIPAFKLM---RNAAAYWR 218


>gi|166154796|ref|YP_001654914.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|166155671|ref|YP_001653926.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336072|ref|ZP_07224316.1| threonyl-tRNA synthetase [Chlamydia trachomatis L2tet1]
 gi|238687393|sp|B0B8F5|SYT_CHLT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|238687442|sp|B0BA34|SYT_CHLTB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|165930784|emb|CAP04281.1| threonyl-tRNA synthetase [Chlamydia trachomatis 434/Bu]
 gi|165931659|emb|CAP07235.1| threonyl-tRNA synthetase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 635

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 17/218 (7%)

Query: 550 AEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
              +           L+   +++ LT D    R++   H++ H+L  A+  +  S     
Sbjct: 33  VGALINDQEKDLSTTLQDGDTVLFLTWDDPKGREI-FLHTSAHILAQAVLRLWPSAQPTI 91

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAAL 667
           G  I   G  +D   +  I+  +  +IE     I  +  P+  ++  ++E A+A  +   
Sbjct: 92  GPVIDQ-GFYYDFA-NLSISEEDFPAIEAMAKTIAEEKFPISRQVFPDKEAALAYFSQNP 149

Query: 668 LG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAG 719
                  +    V +     G     LC G H+ ST  +    ++  SS        R  
Sbjct: 150 FKAELIAELPEEVEISAYTQGEFLD-LCRGPHLPSTAPVKAFKLLRTSSAYWKGDPSRES 208

Query: 720 IRRIEAI---TGQRARSHLMGQDEKLKSLASFLKVSQG 754
           + RI  +   T +  + HL   +E  K     L     
Sbjct: 209 LIRIYGVSFPTTKELKEHLHQLEEAKKRDHRVLGTKLD 246


>gi|291443408|ref|ZP_06582798.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
 gi|291346355|gb|EFE73259.1| threonyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998]
          Length = 658

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK+IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAIEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKY---NDRVRVVSVEYEDGGVHS------ 690
           +      R+++ EDA            L+G K    +D    V V   +  ++       
Sbjct: 130 RGQKFSRRVVSDEDAREELANEPYKLELIGIKGSASSDDGADVEVGGGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPTTRFIPAFKLM---RNAAAYWR 223


>gi|55820651|ref|YP_139093.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMG 18311]
 gi|55822542|ref|YP_140983.1| threonyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066]
 gi|116627458|ref|YP_820077.1| threonyl-tRNA synthetase [Streptococcus thermophilus LMD-9]
 gi|73919831|sp|Q5M0T3|SYT_STRT1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919832|sp|Q5M5B9|SYT_STRT2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122267944|sp|Q03LP1|SYT_STRTD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|55736636|gb|AAV60278.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus LMG 18311]
 gi|55738527|gb|AAV62168.1| threonyl-tRNA synthetase 1 [Streptococcus thermophilus CNRZ1066]
 gi|116100735|gb|ABJ65881.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Streptococcus
           thermophilus LMD-9]
 gi|312277977|gb|ADQ62634.1| Threonyl-tRNA synthetase ThrS [Streptococcus thermophilus ND03]
          Length = 648

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 97/262 (37%), Gaps = 36/262 (13%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I    ++  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRVITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGV------HSSAL 693
           + +N P +   + +++A             ND  ++  +E    +DGG+          L
Sbjct: 129 VKENFPSIREEVTKDEAREIFK--------NDPYKLELIEEHSEDDGGLTIYRQGEYVDL 180

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           C G HV STG I + +++   ++     R  +      R +     +K K L ++LK   
Sbjct: 181 CRGPHVPSTGRIQIFHLL---NVAGAYWRGNSDNAMMQRIYGTAWFDK-KDLKAYLK--- 233

Query: 754 GNVVGRVEEIWEE-YRKLQLIH 774
                R+EE  E  +RKL    
Sbjct: 234 -----RLEEAKERDHRKLGKEL 250


>gi|296282100|ref|ZP_06860098.1| threonyl-tRNA synthetase [Citromicrobium bathyomarinum JL354]
          Length = 669

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK---PITSAELKSIEDNVNDI 642
            H   H+L  A+  +        G   T DG  +D   ++     T  +L  IE+ +  I
Sbjct: 76  RHDYAHVLAEAVQNLFPGTQITFGPA-TDDGFYYDFAPAEGRGAFTEEDLPKIEEEMRRI 134

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           IA + P+   +  R+  I        G  +         E E+  ++       +C G H
Sbjct: 135 IAADTPLEREVWTRQQLIQWFKDH--GESFKAEWAAELPEGEELTIYRQGDWLDMCRGPH 192

Query: 699 VSSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           ++STG  +     +   S          A + RI   TG   +  L     +L+  A 
Sbjct: 193 LASTGKLDPQAFKLTRVSGAYWRGDQKNAMLSRIYG-TGWLNKKQLNEHLHRLEEAAK 249


>gi|251781963|ref|YP_002996265.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390592|dbj|BAH81051.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126789|gb|ADX24086.1| threonyl-tRNA synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 647

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 6/177 (3%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +  +   
Sbjct: 33  KKALAGKFNGQLIDTTRAIEEDGSIEIVTPDHEDAYDVLRHSAAHLFAQAAKRLFPNLHL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              I++ +L  IE  +  I+ +N P +   + +E+A+      
Sbjct: 93  GVGPAIAEGFYYDTDNADGQISNEDLPRIEAEMQKIVKENYPCIREEVTKEEALELFKDD 152

Query: 667 LLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +  N+        Y  G      LC G HV STG I + +++   ++     R
Sbjct: 153 PYKVELINEHAGAGLTVYRQGEF--VDLCRGPHVPSTGRIQVFHLL---NVAGAYWR 204


>gi|324991486|gb|EGC23419.1| threonine--tRNA ligase [Streptococcus sanguinis SK353]
          Length = 647

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|224438525|ref|ZP_03659445.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313144952|ref|ZP_07807145.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
 gi|313129983|gb|EFR47600.1| threonyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818]
          Length = 603

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  +  +G  +D      I+  +L SIE  + +I  
Sbjct: 41  IRHSCAHLMAQAIKSLYPEAKFFVGPVVN-EGFYYDFKVDSKISEEDLPSIESKMLEIAK 99

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  P+V   + R+DA A  A   L      ++    +     G     LC G H+ +T  
Sbjct: 100 KAYPIVKSTLLRKDAEAKFANDELKQAVMSKIPDDKLSVYTQGDF-EDLCRGPHLPNTKL 158

Query: 705 IMLLYIVS 712
           +    +  
Sbjct: 159 LQHFKLTK 166


>gi|254456980|ref|ZP_05070408.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
 gi|207085772|gb|EDZ63056.1| threonyl-tRNA synthetase [Campylobacterales bacterium GD 1]
          Length = 602

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K  G  +     +      E    + +D  +     + HS  HL+  A+ ++        
Sbjct: 7   KHNGEIIDLQTAKELGFEGEQ---IHLDNSSDSLEVLRHSTAHLMAQAVKSLYPDAKFYV 63

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  +  +G  +D      +   +LK+IE  +     +   +    ++ ++A        L
Sbjct: 64  GPTV-KEGFYYDFKTESEVGEGDLKNIEKQMLSFAKKKYEIEKYEISMDEAKEKFKDDHL 122

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
                +R+    V     G     LC G H+ + G I    ++ 
Sbjct: 123 KLSVMERIPGDRVTIYKQGEF-EDLCRGPHLPNIGLIRYFKLLK 165


>gi|154490252|ref|ZP_02030513.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
 gi|154089144|gb|EDN88188.1| hypothetical protein PARMER_00484 [Parabacteroides merdae ATCC
           43184]
          Length = 651

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  HS+ HL+  AL  +        G  I  +G  +DV   +      +  +IE  + +
Sbjct: 69  HAFWHSSAHLMAEALQELYPGIKFGIGPAI-ENGFYYDVDPGEATIKEGDFPAIEAKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCG 695
           ++A+   +  + +++ DA+        G +Y      +  E EDG + +      + LC 
Sbjct: 128 LVAKKEEIKRQDISKADALKMFGDR--GEEYKTE---LISELEDGKITTYTQGAFTDLCR 182

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G H+ +T  +  + I+S   +     R
Sbjct: 183 GPHLPNTSYLKAVKIMS---VAGAYWR 206


>gi|139437031|ref|ZP_01771191.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
 gi|133776678|gb|EBA40498.1| Hypothetical protein COLAER_00165 [Collinsella aerofaciens ATCC
           25986]
          Length = 611

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 19/179 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
             I HSA H++  A+  +        G   T +G  +DV   +   I+  +  +IE  + 
Sbjct: 44  HVIRHSAAHIMAQAIKRLYPQADFAYGPA-TDNGFYYDVDLPEGVKISEDDFPAIEAEMK 102

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCG 695
            I+ +NL        R +AIA       G KY      D      + +   G +   +C 
Sbjct: 103 KIVKENLKFSVYEKPRAEAIA--LMEERGEKYKVEHIGDLDDDARITFYQQGDYID-MCV 159

Query: 696 GTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G H+  T  +    +   S            + RI  +     +  L      L+    
Sbjct: 160 GPHICYTKALKAFKLTGVSGAYWKGDKDNKMLTRINGVA-FATKEELDEHMHMLEEAKK 217


>gi|121612820|ref|YP_999926.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166223331|sp|A1VXT5|SYT_CAMJJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|87250382|gb|EAQ73340.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 602

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 2/131 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             + +    + + +A+A      L  +   R+   +V     G     LC G H  +T  
Sbjct: 99  AKIEISKYEITKSEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEF-EDLCRGPHAPNTKF 157

Query: 705 IMLLYIVSESS 715
           +    +   + 
Sbjct: 158 LRFFKLTRVAG 168


>gi|146100812|ref|XP_001468953.1| threonyl-tRNA synthetase [Leishmania infantum]
 gi|134073322|emb|CAM72048.1| putative threonyl-tRNA synthetase [Leishmania infantum JPCM5]
          Length = 788

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 89/218 (40%), Gaps = 52/218 (23%)

Query: 575 IDY-QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D+ +   +    HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++ K
Sbjct: 107 LDWDEKDAREVFWHSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESDYK 165

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IE  + +++ Q +P     +++EDA+         +K      +++ +  DGG  +   
Sbjct: 166 AIESAMQELVKQKMPYQRLEVSKEDALRLFGYTEFKSK------ILASKVPDGGSCTVYR 219

Query: 694 CG-------GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           CG       G H+  TG +    +   SS                 S+L G+ E      
Sbjct: 220 CGMLIDPCRGPHLPDTGRVKAFAVTKNSS-----------------SYLEGKAE------ 256

Query: 747 SFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKR 777
                    V+ RV         +  E++ +Q   AKR
Sbjct: 257 -------NEVLQRVYGISFPKNPMLTEWKTIQEEAAKR 287


>gi|241761215|ref|ZP_04759303.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241374122|gb|EER63619.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 659

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIA 644
            H   H+L  A+  +        G  +T DG  +D     +P T  +L  IE  +  IIA
Sbjct: 76  RHDYAHILAEAVQKLFPGTQITFGP-VTDDGFYYDFAPKDRPFTEEDLPLIEAEMRKIIA 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           QN  +V  +  R+  I+   +   G K+         E ++  ++ +     +C G H+ 
Sbjct: 135 QNNALVREVWERDKLISLWESQ--GEKFKAEWAKELPEGQELTIYRAGEWFDMCRGPHLP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++        + +     R
Sbjct: 193 STGKLDP-KAFKLTRVSGAYWR 213


>gi|56551661|ref|YP_162500.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|260752754|ref|YP_003225647.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|73919847|sp|Q5NPH1|SYT_ZYMMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|56543235|gb|AAV89389.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552117|gb|ACV75063.1| threonyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 659

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIA 644
            H   H+L  A+  +        G  +T DG  +D     +P T  +L  IE  +  IIA
Sbjct: 76  RHDYAHILAEAVQKLFPGTQITFGP-VTDDGFYYDFAPKDRPFTEEDLPLIEAEMRKIIA 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           QN  +V  +  R+  I+   +   G K+         E ++  ++ +     +C G H+ 
Sbjct: 135 QNNALVREVWERDKLISLWESQ--GEKFKAEWAKELPEGQELTIYRAGEWFDMCRGPHLP 192

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG++        + +     R
Sbjct: 193 STGKLDP-KAFKLTRVSGAYWR 213


>gi|331266854|ref|YP_004326484.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
 gi|326683526|emb|CBZ01144.1| threonyl-tRNA synthetase [Streptococcus oralis Uo5]
          Length = 647

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|322385772|ref|ZP_08059416.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
 gi|321270510|gb|EFX53426.1| threonine--tRNA ligase [Streptococcus cristatus ATCC 51100]
          Length = 649

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYCQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|307709563|ref|ZP_07646017.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
 gi|307619694|gb|EFN98816.1| threonyl-tRNA synthetase [Streptococcus mitis SK564]
          Length = 647

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITKDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|319946565|ref|ZP_08020800.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
 gi|319747311|gb|EFV99569.1| threonine--tRNA ligase [Streptococcus australis ATCC 700641]
          Length = 647

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|116328741|ref|YP_798461.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331652|ref|YP_801370.1| threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280605|sp|Q04R58|SYT_LEPBJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|122283474|sp|Q04ZG7|SYT_LEPBL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116121485|gb|ABJ79528.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125341|gb|ABJ76612.1| Threonine--tRNA ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 639

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCIT--PDGLRFDVTHSKPI-TSAELKSIEDNVN 640
           +  HSA HLL  A+  +  +     G  I   P    +D+     I T  +   IE  + 
Sbjct: 71  TFQHSAAHLLGMAVQNLYKNANLTVGPVIENGPGFFYYDIDFQGTIITPEDFPKIEAEME 130

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGG 696
            I+  +  V  +++ +++AI +     LG KY     +  +  E+  ++       LC G
Sbjct: 131 RIVKADYTVWRKVVPKKEAIETFQK--LGEKYKIE-IIGGILSEEVSIYGMGEWFDLCRG 187

Query: 697 THVSSTGEIMLLYIVSESS 715
            HVS++G +    + + S 
Sbjct: 188 PHVSNSGILKSFKLTAISG 206


>gi|297748711|gb|ADI51257.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-EC]
 gi|297749591|gb|ADI52269.1| Threonyl-tRNA synthetase [Chlamydia trachomatis D-LC]
          Length = 660

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 17/204 (8%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L+   +++ LT D    R++   H++ H+L  A+  +  S     G  I   G  +D  
Sbjct: 72  TLQDGDTVLFLTWDDPKGREI-FLHTSAHILAQAVLRLWPSAQPTIGPVIDQ-GFYYDFA 129

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLG-TKYNDRVRVVS 680
            +  I+  +  +IE     I  +  P+  ++  ++E A+A  +          +    V 
Sbjct: 130 -NLSISEEDFPAIEAMAKTIAEEKFPISRQVFPDKEAALAYFSQNPFKAELIAELPEEVE 188

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAI---TGQR 730
           +     G     LC G H+ ST  +    ++  SS        R  + RI  +   T + 
Sbjct: 189 ISAYTQGEFLD-LCRGPHLPSTAPVKAFKLLRTSSAYWKGDPSRESLIRIYGVSFPTTKE 247

Query: 731 ARSHLMGQDEKLKSLASFLKVSQG 754
            + HL   +E  K     L     
Sbjct: 248 LKEHLHQLEEAKKRDHRVLGTKLD 271


>gi|54025682|ref|YP_119924.1| threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
 gi|54017190|dbj|BAD58560.1| putative threonyl-tRNA synthetase [Nocardia farcinica IFM 10152]
          Length = 703

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 18/148 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D    +P T  +L  +E  +  II 
Sbjct: 92  IRHSAAHVLAQAVQQEFPEAKLGIGPPI-KDGFYYDFQVERPFTPEDLARLESRMKKIIK 150

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN-DRVRVVSVEYEDGGVHSS------- 691
                  R++  E+A A          L+  K   D   V+ V  ++  ++ +       
Sbjct: 151 GAQRFSRRVVEIEEARAELANEPFKLELISDKSGIDDPEVMEVGGKELTIYDNLDPRTGE 210

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS 715
                LC G H+ +T  I    +   S+
Sbjct: 211 KVWGDLCRGPHIPTTKFIPAFKLTRSSA 238


>gi|325473136|gb|EGC76332.1| threonyl-tRNA synthetase [Treponema denticola F0402]
          Length = 585

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 8/142 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HS  H++  A+  +        G  I   G  +D    +PI + +L +IE  +  I+
Sbjct: 13  TLRHSTAHVMAEAVVNLFPGTKVAIGPAIDY-GFYYDFELPRPINNDDLPAIEKEMRKIL 71

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                    +++RE A+              D      +     G  +  LC G HV S 
Sbjct: 72  TTRSNFEKEVISREKALEMFKDQPFKIELIKDLPADEEISIYKSGEFTD-LCRGPHVCSM 130

Query: 703 GEIML--LYIVSESSIRAGIRR 722
            +I      ++    I     R
Sbjct: 131 ADINAQGFKLMK---IAGAYWR 149


>gi|302346317|ref|YP_003814615.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
 gi|302150675|gb|ADK96936.1| threonine--tRNA ligase [Prevotella melaninogenica ATCC 25845]
          Length = 649

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 18/177 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +  +G  +DV  ++   I+  +   IE+ + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ENGFFYDVMPAEGQTISENDFPKIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N  VV R +++ DA+    A   G +Y     V  +E      +S      LC G
Sbjct: 128 ELAKKNEQVVRRDVSKADAVKEFTAD--GQEYKVEHIVEDLEDGTISTYSQGNFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
            H+ STG I  + I S +         R  + RI  IT   ++     +   E+ K 
Sbjct: 186 PHLVSTGAIKAVKITSVAGAFWRGDAKREQMTRIYGITFPKKKMLDEYLEMLEEAKK 242


>gi|15605310|ref|NP_220096.1| threonyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789318|ref|YP_328404.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|237803010|ref|YP_002888204.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|237804932|ref|YP_002889086.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311401|ref|ZP_05353971.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276]
 gi|255317702|ref|ZP_05358948.1| threonyl-tRNA synthetase [Chlamydia trachomatis 6276s]
 gi|255348963|ref|ZP_05380970.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70]
 gi|255503502|ref|ZP_05381892.1| threonyl-tRNA synthetase [Chlamydia trachomatis 70s]
 gi|7388284|sp|O84585|SYT_CHLTR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|123731247|sp|Q3KLB6|SYT_CHLTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6578108|gb|AAC68183.2| Threonyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167848|gb|AAX50856.1| threonyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13]
 gi|231273232|emb|CAX10145.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274244|emb|CAX11038.1| threonyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT]
 gi|296436115|gb|ADH18289.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9768]
 gi|296437044|gb|ADH19214.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11222]
 gi|296437975|gb|ADH20136.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/11074]
 gi|297140477|gb|ADH97235.1| threonyl-tRNA synthetase [Chlamydia trachomatis G/9301]
          Length = 635

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 17/204 (8%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L+   +++ LT D    R++   H++ H+L  A+  +  S     G  I   G  +D  
Sbjct: 47  TLQDGDTVLFLTWDDPKGREI-FLHTSAHILAQAVLRLWPSAQPTIGPVIDQ-GFYYDFA 104

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLG-TKYNDRVRVVS 680
            +  I+  +  +IE     I  +  P+  ++  ++E A+A  +          +    V 
Sbjct: 105 -NLSISEEDFPAIEAMAKTIAEEKFPISRQVFPDKEAALAYFSQNPFKAELIAELPEEVE 163

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAI---TGQR 730
           +     G     LC G H+ ST  +    ++  SS        R  + RI  +   T + 
Sbjct: 164 ISAYTQGEFLD-LCRGPHLPSTAPVKAFKLLRTSSAYWKGDPSRESLIRIYGVSFPTTKE 222

Query: 731 ARSHLMGQDEKLKSLASFLKVSQG 754
            + HL   +E  K     L     
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGTKLD 246


>gi|270293200|ref|ZP_06199411.1| threonine--tRNA ligase [Streptococcus sp. M143]
 gi|270279179|gb|EFA25025.1| threonine--tRNA ligase [Streptococcus sp. M143]
          Length = 647

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|311257020|ref|XP_003126919.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 81

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 826 MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883
           ML  +  E  K   L  V +++ +R   A +  +  +  L  G GGG+   AQ+ G N  
Sbjct: 1   MLFTVDNEAGKIICLCQVPQNIANRGLKASEWVQQVSG-LMDGKGGGKDVSAQATGKNVG 59

Query: 884 KADQAIAGVASFLK 897
              +A+    SF +
Sbjct: 60  CLQEALQLATSFAQ 73


>gi|307564422|ref|ZP_07626963.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
 gi|307346782|gb|EFN92078.1| threonine--tRNA ligase [Prevotella amnii CRIS 21A-A]
          Length = 650

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVN 640
            S  HS+ HLL  AL  +        G  +  +G  +DV      PI+  +   IE  + 
Sbjct: 69  HSFWHSSAHLLAEALKELYPGIQFGFGPAL-ENGFFYDVQTADGTPISENDFPKIEAKMM 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N P++ R +++ +AI    A   G +Y        +E      +S      LC G
Sbjct: 128 ELAKKNSPIIRREVSKAEAIKEFKAD--GQEYKVEHIEKDLEDGTISTYSQGNFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            H+       L+  V  +S+     R +A   Q  R +
Sbjct: 186 PHL---VSTGLIKAVKLTSVAGAFWRGDAKNAQLTRIY 220


>gi|301794619|emb|CBW37067.1| threonyl-tRNA synthetase [Streptococcus pneumoniae INV104]
          Length = 647

 Score = 64.3 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHGDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|300787200|ref|YP_003767491.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
 gi|299796714|gb|ADJ47089.1| threonyl-tRNA synthetase [Amycolatopsis mediterranei U32]
          Length = 675

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  +  DG  +D    KP T  +L+++E  +  I+ 
Sbjct: 77  IRHSAAHVLAQAVQQQFPDAKLGIGPPV-KDGFYYDFAVDKPFTPEDLQALEKRMKQIVK 135

Query: 645 QNLPVVTRIMN-REDAIASGAAALLGTKY------NDRVRVVSVEYEDGGVHS------- 690
                  R+ +  ++A    A      +        D   V+ V   +  ++        
Sbjct: 136 GAQQFSRRVFDSVDEARKELADEPFKLELVDLKSEVDTSEVMEVGEGELTIYDNLDPRTK 195

Query: 691 ----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               S LC G HV +T  I    +     + A   R
Sbjct: 196 ERVWSDLCRGPHVPTTKFIPAFKLT---RVAAAYWR 228


>gi|189461814|ref|ZP_03010599.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
 gi|189431408|gb|EDV00393.1| hypothetical protein BACCOP_02480 [Bacteroides coprocola DSM 17136]
          Length = 646

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKEGDLPAIEKKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + ++   +V + +++EDA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LASKKEELVRKSISKEDALKMFGER--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ ST  +  + ++S +         R  + RI  IT
Sbjct: 185 HLPSTAPVKAIKLLSVAGAYWRGQEDRKQMTRIYGIT 221


>gi|255507180|ref|ZP_05382819.1| threonyl-tRNA synthetase [Chlamydia trachomatis D(s)2923]
 gi|289525626|emb|CBJ15104.1| threonyl-tRNA synthetase [Chlamydia trachomatis Sweden2]
 gi|296435188|gb|ADH17366.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/150]
 gi|296438907|gb|ADH21060.1| threonyl-tRNA synthetase [Chlamydia trachomatis E/11023]
          Length = 635

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 17/204 (8%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L+   +++ LT D    R++   H++ H+L  A+  +  S     G  I   G  +D  
Sbjct: 47  TLQDGDTVLFLTWDDPKGREI-FLHTSAHILAQAVLRLWPSAQPTIGPVIDQ-GFYYDFA 104

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLG-TKYNDRVRVVS 680
            +  I+  +  +IE     I  +  P+  ++  ++E A+A  +          +    V 
Sbjct: 105 -NLSISEEDFPAIEAMAKTIAEEKFPISRQVFPDKEAALAYFSQNPFKAELIAELPEEVE 163

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAI---TGQR 730
           +     G     LC G H+ ST  +    ++  SS        R  + RI  +   T + 
Sbjct: 164 ISAYTQGEFLD-LCRGPHLPSTAPVKAFKLLRTSSAYWKGDPSRESLIRIYGVSFPTTKE 222

Query: 731 ARSHLMGQDEKLKSLASFLKVSQG 754
            + HL   +E  K     L     
Sbjct: 223 LKEHLHQLEEAKKRDHRVLGTKLD 246


>gi|322517198|ref|ZP_08070081.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
 gi|322124257|gb|EFX95773.1| threonine--tRNA ligase [Streptococcus vestibularis ATCC 49124]
          Length = 648

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 28/258 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTARAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV STG I + +++   ++     R  +      R +     +K K L ++LK       
Sbjct: 185 HVPSTGRIQVFHLL---NVAGAYWRGNSDNAMMQRIYGTAWFDK-KDLKAYLK------- 233

Query: 758 GRVEEIWEE-YRKLQLIH 774
            R+EE  E  +RKL    
Sbjct: 234 -RLEEAKERDHRKLGKEL 250


>gi|262202217|ref|YP_003273425.1| threonyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
 gi|262085564|gb|ACY21532.1| threonyl-tRNA synthetase [Gordonia bronchialis DSM 43247]
          Length = 691

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 66/207 (31%), Gaps = 37/207 (17%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HSA H+L  A+  +        G  I  DG  +D    +P T  
Sbjct: 64  VAANTDAGR---SVIRHSAAHVLAQAVQDLFPGTRLGIGPPI-KDGFYYDFDVDEPFTPE 119

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIM-NREDAIASGAAALLGTKY------NDRVRVVSVEY 683
           +L  +E  +  II        R+  ++++A A  A      +        D   V+ V  
Sbjct: 120 DLSKLEKKMRQIIKSGQRFSRRVYASKDEARAELANEPFKLELIDDKGAADDSEVMEVGG 179

Query: 684 EDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RI 723
            +   +              LC G HV +T  I    +    S  A  R         RI
Sbjct: 180 AELTAYDNLNPRTGERMWCDLCRGPHVPTTKYIAAFKLTR--SSAAYWRGDQDNADLQRI 237

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLK 750
                  A      QD  L+ LA   K
Sbjct: 238 YGT----AWESTEAQDAYLEMLAEAEK 260


>gi|72547539|ref|XP_843247.1| threonyl-tRNA synthetase [Leishmania major strain Friedlin]
 gi|323363762|emb|CBZ12768.1| putative threonyl-tRNA synthetase [Leishmania major strain
           Friedlin]
          Length = 787

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 15/149 (10%)

Query: 575 IDY-QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D+ +   +    HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++ K
Sbjct: 106 LDWAEKDAREVFWHSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESDYK 164

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IE  + +++ Q +P     +++EDA+         +K      +++ +  DGG  +   
Sbjct: 165 AIESAMQELVKQKMPYQRLEVSKEDALRLFGYTEFKSK------ILASKVPDGGSCTVYR 218

Query: 694 CG-------GTHVSSTGEIMLLYIVSESS 715
           CG       G H+  TG +    +   SS
Sbjct: 219 CGMLIDPCRGPHLPDTGRVKAFAVTKNSS 247


>gi|218708646|ref|YP_002416267.1| putative metal-dependent hydrolase [Vibrio splendidus LGP32]
 gi|218321665|emb|CAV17619.1| putative metal-dependent hydrolase [Vibrio splendidus LGP32]
          Length = 300

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 85/267 (31%), Gaps = 66/267 (24%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------- 545
             + V       K  ++ D TPF+  +        D G     G +  + D         
Sbjct: 28  NAKAVYVESDDSKTYLITDVTPFHPVSHIWPDHPADRGFVSVGGEQYIVEDCLVGAIEQS 87

Query: 546 -----------VQKKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                      V++   G   + VH   V   I++    + L++D +++  LS  HSA H
Sbjct: 88  TGNLYIAADIPVKRDTAGWAFVVVHQLPVSASIIKIGDEVELSVDKEHQASLSRGHSAGH 147

Query: 592 LLHHALSTILGSHVSQN-------------------GSCITPDGLRFDVTHSKPITS--- 629
           +   AL+ +L     +                     S +TP+         K +     
Sbjct: 148 IAFLALNKVLAESYWRKDADRKDPLGSYDFNSYAQVTSFVTPELCTDKYRLGKTLKKRGL 207

Query: 630 ------AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L  IE N+N +IA  L   T +             L G    D         
Sbjct: 208 NVADMLTNLDGIEANINQMIAGWLAESTLVT----------MRLEGESLTDSRYWE--WQ 255

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            D     S  CGGTH+ +T E+  L +
Sbjct: 256 LDDETLVSIPCGGTHIDNTSELKALSV 282


>gi|312139482|ref|YP_004006818.1| threonine-tRNA ligase thrs [Rhodococcus equi 103S]
 gi|311888821|emb|CBH48133.1| threonine-tRNA ligase ThrS [Rhodococcus equi 103S]
          Length = 683

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 71/231 (30%), Gaps = 33/231 (14%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            ++ +          +  I HSA H+L  A+           G  I  DG  +D    +P
Sbjct: 57  VDVEVEAVAADTEDGRSVIRHSAAHVLAQAVQQEFPEAKLGIGPPI-KDGFYYDFQVERP 115

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNR------EDAIASGAAALLGTKYN-DRVRVV 679
            T  +L  +E  +  I+        R++        E A       L+  K   D   V+
Sbjct: 116 FTPEDLAKLEKRMKKIVKDAQRFSRRVVEDLEDARTELANEPFKLELIDDKSGIDDPEVM 175

Query: 680 SVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            V   +  ++              LC G H+ +T  I    I       A   R     G
Sbjct: 176 EVGGGELTIYDNLNPRTGEVIWKDLCRGPHIPTTKYIPAFKIT---RSSAAYWR-----G 227

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            ++R  L             L       +  + E   E R  + + A+  L
Sbjct: 228 DQSREDLQRIYGTAWESTEAL----DQHLELLAE--AERRDHRKLGAELDL 272


>gi|29840712|ref|NP_829818.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
 gi|33301681|sp|Q821I3|SYT_CHLCV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29835062|gb|AAP05696.1| threonyl-tRNA synthetase [Chlamydophila caviae GPIC]
          Length = 635

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 21/228 (9%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
           +I +    A  +           L    +L       +  +    H++ H+L  A+  + 
Sbjct: 25  KIKNSHYFAGVVINDQIKDLSTTLNEGDTLRFVTFEDSEGREIFLHTSAHILAQAVLRLW 84

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAI 660
              V   G  I   G  +D   +  ++  +L +IE+ +  I+ + L V  +  N +E+A+
Sbjct: 85  PQAVPTIGPVIN-QGFYYDFA-NLSVSEEDLLAIENMMEQIVQEKLEVSKKTFNGKEEAL 142

Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS- 715
                          +     E E    +S      LC G H+ ST  +    ++  S+ 
Sbjct: 143 KEFMHNAF----KAELIQELPEGESITAYSQGEFMDLCRGPHLPSTAPVKAFKLLRTSAA 198

Query: 716 ------IRAGIRRIEAI---TGQRARSHLMGQDEKLKSLASFLKVSQG 754
                  R  + RI  I   T +  + HL   +E  K     L     
Sbjct: 199 YWRGDPSRESLVRIYGISFPTTKELKEHLHQLEEAKKRDHRVLGAKLD 246


>gi|295396075|ref|ZP_06806258.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971016|gb|EFG46908.1| threonine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 667

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 17/159 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L    ++   +  +      + HS  H++  A+  +        G  IT DG  +D   
Sbjct: 45  ELHAGDTVEPILISEPDGLDILRHSCAHVVAQAVQELYPGSKLGIGPYIT-DGFYYDFQV 103

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-------------- 669
            +P T  +LK+IE     I+ +       +++ ++AI   A                   
Sbjct: 104 EEPFTPEDLKAIEKKAQRIVKEGQTFHRVVVDEDEAIRREANEPFKLELIQDKGKGAEGA 163

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                   + V       G V    LC G H+ ST  I 
Sbjct: 164 SVEVGGSELTVYENRNRKGEVVWQDLCRGPHLPSTKLIG 202


>gi|325672628|ref|ZP_08152324.1| threonine--tRNA ligase [Rhodococcus equi ATCC 33707]
 gi|325556505|gb|EGD26171.1| threonine--tRNA ligase [Rhodococcus equi ATCC 33707]
          Length = 683

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 61/201 (30%), Gaps = 27/201 (13%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            ++ +          +  I HSA H+L  A+           G  I  DG  +D    +P
Sbjct: 57  VDVEVEAVAADTEDGRSVIRHSAAHVLAQAVQQEFPEAKLGIGPPI-KDGFYYDFQVERP 115

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNR------EDAIASGAAALLGTKYN-DRVRVV 679
            T  +L  +E  +  I+        R++        E A       L+  K   D   V+
Sbjct: 116 FTPEDLAKLEKRMKKIVKDAQRFSRRVVEDLEDARTELANEPFKLELIDDKSGIDDPEVM 175

Query: 680 SVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            V   +  ++              LC G H+ +T  I    I       A   R     G
Sbjct: 176 EVGGGELTIYDNLNPRTGEVIWKDLCRGPHIPTTKYIPAFKIT---RSSAAYWR-----G 227

Query: 729 QRARSHLMGQDEKLKSLASFL 749
            ++R  L             L
Sbjct: 228 DQSREDLQRIYGTAWESTEAL 248


>gi|302550176|ref|ZP_07302518.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
 gi|302467794|gb|EFL30887.1| threonyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736]
          Length = 658

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 50  TLAEGDEVEGVEISSEDGLNILRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYNDR 675
            KP T  +LK+IE  + +I  +      R +  E A    A          L G+  +D 
Sbjct: 109 EKPFTPEDLKAIEKKMQEIQKRGQKFARRAVTDEAAREELANEPYKLELIGLKGSASSDD 168

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ ST  I    ++      A   R
Sbjct: 169 GADVEVGAGELTIYDNLDAKTGELCWKDLCRGPHLPSTRAIPAFKLM---RNAAAYWR 223


>gi|110668486|ref|YP_658297.1| threonyl-tRNA synthetase [Haloquadratum walsbyi DSM 16790]
 gi|121687233|sp|Q18H54|SYT_HALWD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|109626233|emb|CAJ52691.1| threonine--tRNA ligase [Haloquadratum walsbyi DSM 16790]
          Length = 642

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 26/243 (10%)

Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
           +  +V+  +  +  Q  + HSA H+   AL           G   T DG  +D+  S  +
Sbjct: 56  DARVVIVTEQSDEYQRVLRHSAAHVFAQALQREYPDAKLTIGPP-TDDGFYYDIA-SVDL 113

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDG 686
              +L++IE  +  II  ++P+  +  +RE+A +                          
Sbjct: 114 DENDLETIETEMEAIIDADIPITQQYQSREEAFSKYENNPYKCDILETEAADEDPVSFYI 173

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
                 LC G HV STGEI  + +++ SS               A       ++ L  + 
Sbjct: 174 QDDFEDLCQGPHVDSTGEIGAITLLNISS---------------AYWRGDEDNDTLTRVY 218

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
                S+  +    E   E  +K +    ++  Q    +L    I D+      +   D 
Sbjct: 219 GAAFESESEL----ESFLERRKKAKERDHRKIGQ----ELDLFSIPDITGPGLPLYHPDG 270

Query: 807 KEL 809
           K++
Sbjct: 271 KKI 273


>gi|315612715|ref|ZP_07887626.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314825|gb|EFU62866.1| threonine--tRNA ligase [Streptococcus sanguinis ATCC 49296]
          Length = 647

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRSITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|322437350|ref|YP_004219562.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321165077|gb|ADW70782.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 687

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 37/244 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +       +G      G  +DV    P T  +L +IE  + +++A
Sbjct: 114 LRHSTAHVMATAILELFPETKLGHGPATDA-GFFYDVYRETPFTEDDLAAIEKRMGEVVA 172

Query: 645 QNLPVVTRIMNREDAIASGAAA------LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +N   V     REDA+   AA           ++      VS+ Y +GG      C G H
Sbjct: 173 RNDAFVKETEPREDALQEYAAEGEFMKVHFIERFTQAGEPVSL-YRNGGFTD--FCRGPH 229

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL--ASFLKVSQGNV 756
           V STG +    + S             + G  A      ++++L+ +   +F      + 
Sbjct: 230 VPSTGRVKAFKVTS-------------VAG--AYWLGDEKNQQLQRIYGTAFFNAKDMD- 273

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
                     +++L+ I A+   ++  + L    I +V     I        ++  M+  
Sbjct: 274 --------AHFKRLEEIKARDH-RVLGKQLDLFSIQEVAGAGLIFWHPKGGLIRKAMEDW 324

Query: 817 QKKI 820
            ++ 
Sbjct: 325 MRED 328


>gi|281420278|ref|ZP_06251277.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
 gi|281405773|gb|EFB36453.1| threonine--tRNA ligase [Prevotella copri DSM 18205]
          Length = 650

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ L      + + +  H++ HLL  AL  +        G  +        +  
Sbjct: 50  PINEDANVELYKFEDEQGKHTFWHTSAHLLAEALQELYPGIQFGFGPAVESGFFYDVMPA 109

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
              + S  +   IE  + ++  +N PVV + + + DA+A   A   G  Y        +E
Sbjct: 110 EGQVISENDFAKIEAKMMELAKKNEPVVRKEVAKADALAEFKAD--GQTYKCEHIEQDLE 167

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                 ++      LC G H+ +TG I  + I S   +     R +A 
Sbjct: 168 DGTITTYTQGNFTDLCRGPHLMNTGLIKAVKITS---VAGAFWRGDAK 212


>gi|160946146|ref|ZP_02093357.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
 gi|158447669|gb|EDP24664.1| hypothetical protein PEPMIC_00108 [Parvimonas micra ATCC 33270]
          Length = 648

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 74/203 (36%), Gaps = 13/203 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G ++ D   +I +G    +         +           L+ + ++          +
Sbjct: 17  EKGVKILDVAISISEGFARNVI-----GAVVNDDIIKGLSETLKEDCTVKFVKFEDKEGK 71

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
               H+++H++  A+  +        G  I  +G  +D+      T  +L+ IE  +  I
Sbjct: 72  EIFWHTSSHVMALAIQRLFPDTKFGIGPAI-ENGFYYDLDSEHKFTPEDLEKIEAEMKKI 130

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHV 699
           + +   V  + ++R+ A+   A      K +      +   + + + G  +  LC G H+
Sbjct: 131 VKEGYSVDRKEVDRDFALKYFAEKGQDYKIDLIEGFDKDAELSFYELGEFTD-LCRGPHL 189

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
               +I  + ++S   I     R
Sbjct: 190 VDVKKIKAVKLLS---IAGAYWR 209


>gi|302380527|ref|ZP_07268992.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|303234012|ref|ZP_07320661.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
 gi|302311470|gb|EFK93486.1| threonine--tRNA ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302494937|gb|EFL54694.1| threonine--tRNA ligase [Finegoldia magna BVS033A4]
          Length = 634

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++HL+ +A+  +        G  I   G  +D+         +L+ IE  +  I+ +N
Sbjct: 73  HTSSHLMAYAIQRLYPGTKFAIGPSID-SGFYYDLDTDHKFVPEDLEKIEAEMKKIVKEN 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYN-------DRVRVVSVEYEDGGVHSSALCGGTHV 699
             +V   ++R++A+        G  Y        D    +++ YE G      LC G H+
Sbjct: 132 PKLVRVEISRKEALERF--KNEGQDYKVDLIENFDEDATITL-YEMGDF--VDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
                I    ++S   I     R
Sbjct: 187 LDVKNIKAFKLLS---IAGAYWR 206


>gi|169824388|ref|YP_001691999.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
 gi|238687735|sp|B0S169|SYT_FINM2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|167831193|dbj|BAG08109.1| threonyl-tRNA synthetase [Finegoldia magna ATCC 29328]
          Length = 634

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+++HL+ +A+  +        G  I   G  +D+         +L+ IE  +  I+ +N
Sbjct: 73  HTSSHLMAYAIQRLYPGTKFAIGPSID-SGFYYDLDTDHKFVPEDLEKIEAEMKKIVKEN 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYN-------DRVRVVSVEYEDGGVHSSALCGGTHV 699
             +V   ++R++A+        G  Y        D    +++ YE G      LC G H+
Sbjct: 132 PKLVRVEISRKEALERF--KNEGQDYKVDLIENFDEDATITL-YEMGDF--VDLCRGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
                I    ++S   I     R
Sbjct: 187 LDVKNIKAFKLLS---IAGAYWR 206


>gi|269216980|ref|ZP_06160834.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
 gi|269129787|gb|EEZ60871.1| threonine--tRNA ligase [Slackia exigua ATCC 700122]
          Length = 587

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           + HSA H++  A+  +        G   T +G  +D+      I+  +  +IE  +  I 
Sbjct: 22  LRHSAAHIMAQAVKRLYPEADFGYGPA-TDNGFYYDIDFADTKISEEDFAAIEAEMKKIC 80

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTH 698
            +NL      + R +A+A       G KY      D      + +   G +   +C G H
Sbjct: 81  KENLKFSVFELPRAEAVA--LMEERGEKYKVEHIGDLPEDSRITFYQQGEYID-MCVGPH 137

Query: 699 VSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +  T  +    + + S            + RI  I   R++  L   +  +     
Sbjct: 138 ICYTKALKAFKLTAVSGAYWKGDKDNKMLTRINGIA-FRSKEELAEHERMVAEAEK 192


>gi|21674935|ref|NP_663000.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
 gi|34222753|sp|Q8KAN0|SYT_CHLTE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|21648164|gb|AAM73342.1| threonyl-tRNA synthetase [Chlorobium tepidum TLS]
          Length = 657

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 20/156 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+ HA+  +        G  I   G  +D+         +L++IE  + +I  +N
Sbjct: 82  HSSSHLMAHAIEELFPGAKFGAGPAI-EQGFYYDIACEHRFNEEDLRAIEAKMLEISKRN 140

Query: 647 LPVVTRIMNREDAIASG--------AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           L +    M RE AI              +L     D    VSV ++DG    + LC G H
Sbjct: 141 LSINREEMPREQAIEYFSNERKDPYKVEILEDTLKDVP-TVSVYHQDG---FADLCSGPH 196

Query: 699 VSSTGEIMLLYIVSES-------SIRAGIRRIEAIT 727
           + STG++  + + + S       S R  ++RI  IT
Sbjct: 197 LPSTGKVKAVLLTNISSSYWRGDSSRETMQRIYGIT 232


>gi|254431853|ref|ZP_05045556.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
 gi|197626306|gb|EDY38865.1| threonyl-tRNA synthetase [Cyanobium sp. PCC 7001]
          Length = 575

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++  A+  +        G   T  G  +D     P + A+LK+I+  +  II + LP+ 
Sbjct: 3   HVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDSPDPFSEADLKAIKKEMIRIINRKLPLE 61

Query: 651 TRIMNREDAIASGAAALLGTKYNDRV---RVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
              ++R +A A   A      Y   +       +     G     LC G HV++TGE+  
Sbjct: 62  RLEVSRAEAEARIQAQ--NEPYKLEILAGITEPITLYTLGEEWWDLCAGPHVANTGELNP 119

Query: 708 LYIVSESSIRAGIRR 722
                  S+     R
Sbjct: 120 -RAFDLESVAGAYWR 133


>gi|226306390|ref|YP_002766350.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
 gi|259516659|sp|C0ZZ26|SYT_RHOE4 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226185507|dbj|BAH33611.1| threonyl-tRNA synthetase [Rhodococcus erythropolis PR4]
          Length = 685

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 19/149 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D    +P T  +L  +E  +  II 
Sbjct: 75  IRHSAAHVLAQAVQKEFPDAKLGIGPPI-KDGFYYDFAVDRPFTPEDLAKLEKRMKQIIK 133

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHS------- 690
            +     R+++       E A       L+  K   D   ++ V   +  ++        
Sbjct: 134 GSQRFSRRVVDSIEDARVELADEPFKLELIDDKSGIDDPEIMEVGGNELTIYDNLDPRTG 193

Query: 691 ----SALCGGTHVSSTGEIMLLYIVSESS 715
               S LC G H+ +T  I    +   S+
Sbjct: 194 DKIWSDLCRGPHIPTTKHIPAFKLTRSSA 222


>gi|294084802|ref|YP_003551562.1| threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664377|gb|ADE39478.1| Threonyl-tRNA synthetase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 641

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 19/147 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H   H++  A+  +        G  I  +G  +D    K  +  +L  IE  +++I+ 
Sbjct: 71  LRHDCAHVMAEAVLELYPETQVTIGPAI-ENGFYYDFHREKAFSEDDLALIEKRMHEIVD 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV----VSVEYEDGGVHSS----ALCGG 696
           ++  +   +  R++A+A         K N+  +V         E    +       LC G
Sbjct: 130 RDEAITRDVWTRDEAVA------FYEKNNEPFKVELVAAIPAEETVTFYKQGNFIDLCRG 183

Query: 697 THVSSTGEIML-LYIVSESSIRAGIRR 722
            H+ STG++     ++    +     R
Sbjct: 184 PHLPSTGKLGHAFKLMK---VAGAYWR 207


>gi|325860506|ref|ZP_08173616.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
 gi|325481987|gb|EGC85010.1| threonine--tRNA ligase [Prevotella denticola CRIS 18C-A]
          Length = 649

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 16/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +  +G  +DV  +  + I+  +   IE+ + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ENGFFYDVMPAAGQTISENDFPRIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N PVV   +++ DAI    A   G +Y        +E      ++      LC G
Sbjct: 128 ELARKNEPVVRHDVSKADAIKEFTAD--GQEYKVEHIEQDLEDGTISTYTQGHFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+ STG I  + I S +         R  + RI  IT
Sbjct: 186 PHLVSTGAIKAIKITSVAGAFWRGDAKREQMTRIYGIT 223


>gi|317506992|ref|ZP_07964761.1| threonyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
 gi|316254750|gb|EFV14051.1| threonyl-tRNA synthetase [Segniliparus rugosus ATCC BAA-974]
          Length = 683

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D    +  T  +L  +E  +  II 
Sbjct: 76  IRHSAAHVLAQAVQQEFPEAKLGIGPPI-KDGFYYDFRVDRAFTPEDLARLETRMRKIIK 134

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN-DRVRVVSVEYEDGGVHSS------- 691
            +     R++  E+A A          L+  K   D   V+ V   +  ++ +       
Sbjct: 135 ASQRFARRVVEVEEARAELAGEPFKLELISDKSGIDDPEVMEVGGAELTIYDNLNPRTGE 194

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                LC G H+ +T  I    +       A   R     G ++R  L          A 
Sbjct: 195 REWADLCRGPHIPTTKHIPAFKLT---RSSAAYWR-----GDQSRDSLQRIYGTAWESAE 246

Query: 748 FL 749
            L
Sbjct: 247 AL 248


>gi|167756637|ref|ZP_02428764.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|237733925|ref|ZP_04564406.1| threonyl-tRNA synthetase [Mollicutes bacterium D7]
 gi|167702812|gb|EDS17391.1| hypothetical protein CLORAM_02174 [Clostridium ramosum DSM 1402]
 gi|229383006|gb|EEO33097.1| threonyl-tRNA synthetase [Coprobacillus sp. D7]
          Length = 577

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 10/171 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           +NHS  H++  A+  +        G  ++ +G  +DV   +  I   ++  IE  +  I 
Sbjct: 13  LNHSCAHVMAQAIKHLYPQAKFWVGPVVS-EGFYYDVDLGNDVIKDEDIPKIEKEMKKIC 71

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
                +  + +++E+A+             +     +            LC G HV +  
Sbjct: 72  KDGKRITRQEISKEEALEMFKDDEYKIDLINNFENDTTISCYRQGDFVDLCRGPHVETVK 131

Query: 704 EIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                 +   S            ++RI  +        L    E L+    
Sbjct: 132 ACKNFKLTKHSGAYWKGDKENKVLQRIYGVC-FETSEDLAKHLELLEEAKR 181


>gi|149001904|ref|ZP_01826858.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147759713|gb|EDK66703.1| threonyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
          Length = 223

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 15/194 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIV 711
           HV STG I + +++
Sbjct: 185 HVPSTGRIQIFHLL 198


>gi|194335337|ref|YP_002017131.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
 gi|238693365|sp|B4SB93|SYT_PELPB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194307814|gb|ACF42514.1| threonyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 657

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 33/204 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+  A+  +        G  I   G  +DV  +      +L+ IE+ + +I  ++
Sbjct: 82  HSSSHLMAQAIEELYPGSKFGAGPSI-EQGFYYDVASTHRFREEDLRKIEERMLEISKRD 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCG 695
           + +    M+R DAI         T  ND  +V  +E           Y   G     LC 
Sbjct: 141 IQIRREEMSRTDAIE-----FFKTVRNDPYKVEILEDTLKEVERVSLYHQDGFTD--LCI 193

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G H+ ST     +  V  S+I +   R     G  AR ++             LK     
Sbjct: 194 GPHIPSTS---KVKAVLLSNISSSYWR-----GDSARENMQRIYGITFPSEKLLK----E 241

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKL 779
            V R+EE   + R  + + A+ +L
Sbjct: 242 HVARLEE--AKRRDHRKLGAELEL 263


>gi|255027300|ref|ZP_05299286.1| threonyl-tRNA synthetase [Listeria monocytogenes FSL J2-003]
          Length = 181

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G++ +    +   E + +   I E G +      ++T D+++   
Sbjct: 14  EPGVSTADIAASISPGLKKKALAGKLNGELLDLVTPIHEDGAIE-----IVTPDHEDALG 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           +   HS  HL+  AL  +        G  I   G  +D+     I+   L  IE  +  I
Sbjct: 69  ILR-HSTAHLMAQALKRLYPDVKFGVGPAI-ESGFYYDIDTEAVISDESLVEIEKEMQKI 126

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           + +N+P+   +++RE+AI    A  +G +Y   +     E E   +++ 
Sbjct: 127 VRENVPIEREVVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQ 173


>gi|160943529|ref|ZP_02090762.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445208|gb|EDP22211.1| hypothetical protein FAEPRAM212_01020 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103777|emb|CBL01321.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 594

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 8/149 (5%)

Query: 573 LTIDY--QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITS 629
             +D   Q++    I H+A H++  A+  +        G   T +G  +DV    + ++ 
Sbjct: 8   GHVDECPQDQELHVIRHTAAHVMAQAIKRLYPQADFAFGPA-TENGFYYDVDLGDQKLSD 66

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVEYEDG 686
            +L +IE  +  I+ +NLP+   I+ R +A                 D        +   
Sbjct: 67  EDLANIEKEMRKIVKENLPIKPFILPRAEAEKLMEERQEHYKVEHMADLADETEFSFFQQ 126

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G +   +C G H++ T  +    I  +S 
Sbjct: 127 GEYVD-MCIGPHLTYTKALKAFKITQQSG 154


>gi|322495387|emb|CBZ30691.1| putative threonyl-tRNA synthetase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 787

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 575 IDYQ-NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D+     +    HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++ K
Sbjct: 106 LDWDDKDAREVFWHSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESDYK 164

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IE  + +++ Q +P     +++EDA+         +K      +++ +  DGG  +   
Sbjct: 165 AIESAMQELVKQKMPYQRLEVSKEDALRLFGYTEFKSK------ILASKVPDGGSCTVYR 218

Query: 694 CG-------GTHVSSTGEIMLLYIVSESS 715
           CG       G H+  TG +    +   SS
Sbjct: 219 CGMLIDPCRGPHLPDTGRVKAFAVTKNSS 247


>gi|297626431|ref|YP_003688194.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922196|emb|CBL56764.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 680

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 28/187 (14%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSA H+   AL  I        G  IT DG  +D   ++P+++ +LK +E  +  II Q
Sbjct: 71  RHSAAHVTAQALQDIFPQARLGIGPPIT-DGFYYDFQ-TEPLSADDLKQVEKKMQAIIKQ 128

Query: 646 NLPVVTRIMNREDAIASGA--------AALLGTKYNDRVRVVSVEYEDGGVHSS------ 691
               V R+++ E+A+   A         A  G   +D    V V   +  ++ +      
Sbjct: 129 RQRFVRRVVSEEEALREEANEPYKLELIADKGHPSDDDNSSVEVGGNELTMYDNVTRNGT 188

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDE 740
                LC G HV +TG I  + +   S+         A ++R+   T    R  L     
Sbjct: 189 VAWRDLCRGPHVPNTGYIKAVALTKTSAAYWRGDQHNAQLQRVYG-TAWATRDDLKAYQT 247

Query: 741 KLKSLAS 747
           ++   A 
Sbjct: 248 RMAEAAK 254


>gi|254167838|ref|ZP_04874687.1| hypothetical protein ABOONEI_1480 [Aciduliprofundum boonei T469]
 gi|197623129|gb|EDY35695.1| hypothetical protein ABOONEI_1480 [Aciduliprofundum boonei T469]
          Length = 148

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+L  A+  +L S        ++    R  V + +  +  E+K IE+  N+ I 
Sbjct: 5   KTHTALHILKGAVVKVL-SAKWTASVYVSGSHGRLTVKYHRKPSQDEMKRIEELANEKIG 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGT-KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +N+P+    + R+ A       +       D V+ + +   D    +   C   H +STG
Sbjct: 64  ENVPIKILTLPRDKAEEMFGEDIYDLFPIPDNVKTLKIVVIDN--WNVNACNKEHTNSTG 121

Query: 704 EIMLLYIVSE 713
           E+  + I   
Sbjct: 122 EVGKIKITKW 131


>gi|322502963|emb|CBZ38047.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 788

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 575 IDYQ-NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D+     +    HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++ K
Sbjct: 107 LDWDDKDAREVFWHSSSHVLGYALERIFDTKLSV-GPALEEGGFFYEGLTNRPVSESDYK 165

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IE  + +++ Q +P     +++EDA+         +K      +++ +  DGG  +   
Sbjct: 166 AIESAMQELVKQKMPYQRLEVSKEDALRLFGYTEFKSK------ILASKVPDGGSCTVYR 219

Query: 694 CG-------GTHVSSTGEIMLLYIVSESS 715
           CG       G H+  TG +    +   SS
Sbjct: 220 CGMLIDPCRGPHLPDTGRVKAFAVTKNSS 248


>gi|322388243|ref|ZP_08061847.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
 gi|321140915|gb|EFX36416.1| threonine--tRNA ligase [Streptococcus infantis ATCC 700779]
          Length = 647

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|306829065|ref|ZP_07462255.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
 gi|304428151|gb|EFM31241.1| threonine--tRNA ligase [Streptococcus mitis ATCC 6249]
          Length = 647

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|225873756|ref|YP_002755215.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
 gi|259516262|sp|C1F9K5|SYT_ACIC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225794268|gb|ACO34358.1| threonine--tRNA ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 681

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 33/241 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL+  A+  +       +G      G  +D     P T  +LK IE  + +I  
Sbjct: 107 LRHSAAHLMATAVLELFPETKLGHGPATDA-GFFYDFYRPTPFTPEDLKLIEGRMAEIAQ 165

Query: 645 QNLPVVTRIMNRED------AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +N   V   + RE+      A           ++      +S+      V     C G H
Sbjct: 166 RNDKFVREFIPREEGLAEFKAGDDFMKVHFIERFTQPGEAISLYRNGNFVD---FCRGPH 222

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V ST  I    + +             + G  A      ++ +L+ L      S+ ++  
Sbjct: 223 VPSTNRIKAFKVTN-------------LAG--AYWLGDEKNPQLQRLYGTAFFSKKDLDE 267

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
               + E         AKR  ++  + L    I ++     I        ++ +M+   +
Sbjct: 268 HFARLEE--------IAKRDHRVLGKQLDLFSIQEIAGAGLIFWHPKGAMIRKIMEDWMR 319

Query: 819 K 819
           +
Sbjct: 320 E 320


>gi|327314606|ref|YP_004330043.1| threonine--tRNA ligase [Prevotella denticola F0289]
 gi|326946255|gb|AEA22140.1| threonine--tRNA ligase [Prevotella denticola F0289]
          Length = 649

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 16/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +  +G  +DV  +  + I+  +   IE+ + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ENGFFYDVMPAAGQTISENDFPRIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N PV+   +++ DAI    A   G +Y        +E      ++      LC G
Sbjct: 128 ELARKNEPVIRHDVSKADAIKEFTAD--GQEYKVEHIEQDLEDGTISTYTQGHFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+ STG I  + I S +         R  + RI  IT
Sbjct: 186 PHLVSTGAIKAIKITSVAGAFWRGDAKREQMTRIYGIT 223


>gi|242024338|ref|XP_002432585.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
 gi|212518045|gb|EEB19847.1| Threonyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus
           corporis]
          Length = 717

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 13/135 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  H+L  AL  + G H+         +G  +D  T    +++ +  SIE  +  I+ +
Sbjct: 150 HSTAHILGEALERLYGGHLCYGPPI--ENGFYYDMFTPDSQVSNTDFPSIESLMKKIVKE 207

Query: 646 NLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             P     M +ED +           +L  K N     V   Y+ G +    LC G HV 
Sbjct: 208 KQPFERLEMKKEDLLEMFKYNHFKVRILNEKINTPTTTV---YKCGSLID--LCRGPHVR 262

Query: 701 STGEIMLLYIVSESS 715
           +TG+I    I   SS
Sbjct: 263 NTGKIKAFKITKNSS 277


>gi|126462800|ref|YP_001043914.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|166225489|sp|A3PLC6|SYT_RHOS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|126104464|gb|ABN77142.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 646

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 18/202 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  +  +G  +D    +  T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQELWPDVKVTIGPVV-ANGWYYDFDREETFTPEDLGAIEKRMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
               V T +  R  AI        G  +   +     E +   ++       LC G H+ 
Sbjct: 133 AREAVKTELWERARAIGYYEER--GEPFKVELVQAIPEDQSIRMYWHGGWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
            TG++      ++S   +     R     G  A   L             LK     +  
Sbjct: 191 HTGQVPADAFKLMS---VAGAYWR-----GDSANKQLQRIYGVAFKTRDELKAYLHMLEE 242

Query: 759 RVEEIWEEY-RKLQLIHAKRKL 779
             +    +  R+++L H + + 
Sbjct: 243 AAKRDHRKLGREMELFHLQEEA 264


>gi|13358098|ref|NP_078372.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761869|ref|YP_001752619.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920446|ref|ZP_02690665.2| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|183508529|ref|ZP_02958053.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701866|ref|ZP_02971526.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
 gi|13959578|sp|Q9PPV6|SYT_UREPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189083629|sp|B1AJH5|SYT_UREP2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|11271125|pir||H82878 threonyl-tRNA synthetase UU534 [imported] - Ureaplasma urealyticum
 gi|6899538|gb|AAF30947.1|AE002152_6 threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827446|gb|ACA32708.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171902899|gb|EDT49188.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC
           27813]
 gi|182675966|gb|EDT87871.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701170|gb|EDU19452.1| threonyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC
           27818]
          Length = 580

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 20/199 (10%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIED 637
               +NHSA HLL  AL+    +     G  I  +G  +D   + P   IT  +L  IE 
Sbjct: 4   FDQKLNHSAAHLLAMALTKFYPNLSLAIGPTID-EGFYYDFNLNDPNTSITPLDLLKIEK 62

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +  I  Q L      +  E A              ++ +  S+     G     LC G 
Sbjct: 63  EMKKITTQALTFDYEQVTYEKAKELFKHNKYKLDIIEQNKNNSLSIYHSGKWFD-LCKGP 121

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           HV +T EI  + ++   +I     R +A             +++L  +       Q  + 
Sbjct: 122 HVQNTKEIKAIKLL---NIAGSYWRGDA------------NNDQLIRIYGVAFSDQDQLD 166

Query: 758 GRVEEIWEEYRKLQLIHAK 776
             ++++ E   +      K
Sbjct: 167 AYLKDLQERKERDHRKIGK 185


>gi|308177541|ref|YP_003916947.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
 gi|307745004|emb|CBT75976.1| threonine--tRNA ligase [Arthrobacter arilaitensis Re117]
          Length = 671

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 93/278 (33%), Gaps = 48/278 (17%)

Query: 534 AIGDGIRLQI------TDVQKKAEGIFVHHAI----VERGILRTEMSLVLTIDYQNRRQL 583
              DG ++Q+             + + V H           L    ++            
Sbjct: 7   LTIDGEQVQVDAGTTGLQHFANDKDVVVMHVDGVLRDLARELEAGTTVTRVTITDPEGLE 66

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H++  A+  +        G  IT DG  FD     P T  +LK +E  +  II
Sbjct: 67  VLRHSTAHVMAQAVQQLRPDSKLGIGPYIT-DGFYFDFDVEDPFTPEDLKQLEKMMQKII 125

Query: 644 AQNLPVVTRIMNREDAIAS--------------------GAAALLGTKYNDRVRVVSVEY 683
            QN   V R ++ E+A A                     G    +     +     +V+ 
Sbjct: 126 NQNQLFVRREVSPEEAKAEMANEPYKCELLAKADSADTSGEGVTVEVAAGETTIYDNVDR 185

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL-MGQDEKL 742
           + G      LC G H+ +T       ++  +          A+T   A   L   ++++L
Sbjct: 186 KSGETVWKDLCRGPHLPNT------KLIKNA---------YALTRSAAAYWLGSEKNKQL 230

Query: 743 KSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKL 779
           + +      ++ ++    E + E E R  + + A+  L
Sbjct: 231 QRIYGTAWPTKDDLKAYQERLAEAERRDHRKLGAELDL 268


>gi|322392280|ref|ZP_08065741.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
 gi|321144815|gb|EFX40215.1| threonine--tRNA ligase [Streptococcus peroris ATCC 700780]
          Length = 647

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRDITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVND 641
             + HSA HL   A   +        G  I  DG  +D  +    I++ +L  IE+ +  
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAI-EDGFYYDTDNPAGQISNEDLPRIEEEMKK 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           I+ +N P +   + +++A               ++++    +++  +        LC G 
Sbjct: 128 IVKENFPSIREEVTKDEAREIFKNDPYKLELIEEHSEDAGGLTIYRQG---EYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQVFHLL---NVAGAYWR 206


>gi|256545863|ref|ZP_05473219.1| threonine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398559|gb|EEU12180.1| threonine--tRNA ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 641

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+ +HL+  A+  I        G  I   G  +D+         +L  IE+ + +I  ++
Sbjct: 73  HTTSHLMAAAIKEIWPDAKFAIGPAI-ESGFYYDIDLEHRFVPEDLPKIEEKMKEIAKKD 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVS 700
           L +V + ++R +A+          +Y   +     E      YE G      LC G H+ 
Sbjct: 132 LKMVRKEISRNEALEYF--KKENQEYKVELIEDLPEDEIITLYEMGDNVFVDLCKGAHLL 189

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  I  + +   +SI     R
Sbjct: 190 STKSIKAIKL---NSIAGAYWR 208


>gi|225550529|ref|ZP_03771478.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|225379683|gb|EEH02045.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 580

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 8/148 (5%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIED 637
               +NHSA H+L  AL+    +     G  I  +G  +D   + P   IT  +L  IE 
Sbjct: 4   FDPKLNHSAAHVLAMALTKFYPNLSLAIGPAID-EGFYYDFNLNDPNTSITPIDLLKIEK 62

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +  I AQ L      ++ E A              +  +  S+     G     LC G 
Sbjct: 63  EMKKIAAQALTFDYEQVSYEQAKDLFKNNKYKLDIIEENKNKSLSIYHSGKWFD-LCKGP 121

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           HV +T EI  + ++   +I     R +A
Sbjct: 122 HVENTKEIKAIKLL---NIAGSYWRGDA 146


>gi|198275235|ref|ZP_03207766.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
 gi|198271818|gb|EDY96088.1| hypothetical protein BACPLE_01394 [Bacteroides plebeius DSM 17135]
          Length = 646

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKEGDLPAIEKKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   +V + +++EDA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEELVRQSISKEDALKMFGDR--GETYKCEL-ISELEDGHISTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ ST  I  + ++S +         R  + RI  IT
Sbjct: 185 HLLSTAPIKAIKLLSVAGAYWRGQEDRKQMTRIYGIT 221


>gi|306825714|ref|ZP_07459053.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432075|gb|EFM35052.1| threonine--tRNA ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 647

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|282877699|ref|ZP_06286514.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
 gi|281300271|gb|EFA92625.1| threonine--tRNA ligase [Prevotella buccalis ATCC 35310]
          Length = 654

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 12/169 (7%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-- 621
            +  + ++ L        + +  HS+ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PINEDATIALYRFEDEEGKHTFWHSSAHLLAEALKELYPGIQFGFGPAI-ENGFFYDVQT 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
               PI+  +   IE  + ++  +N P+V R +++ DA+    A   G  Y     V  +
Sbjct: 109 ADGTPISENDFPKIEQKMMELAKKNQPIVRRELSKADAVNEFTAD--GQTYKVEHIVEDL 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           E  +   ++      LC G H+ STG I  + I S   +     R +A 
Sbjct: 167 EDGNISTYTQGNFTDLCRGPHLMSTGLIKAVKITS---VAGAFWRGDAK 212


>gi|322374759|ref|ZP_08049273.1| threonine--tRNA ligase [Streptococcus sp. C300]
 gi|321280259|gb|EFX57298.1| threonine--tRNA ligase [Streptococcus sp. C300]
          Length = 647

 Score = 63.6 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|229491972|ref|ZP_04385789.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
 gi|229321104|gb|EEN86908.1| threonyl-tRNA synthetase [Rhodococcus erythropolis SK121]
          Length = 649

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 19/149 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D    +P T  +L  +E  +  II 
Sbjct: 39  IRHSAAHVLAQAVQKEFPDAKLGIGPPI-KDGFYYDFAVDRPFTPEDLAKLEKRMKQIIK 97

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHS------- 690
            +     R+++       E A       L+  K   D   ++ V   +  ++        
Sbjct: 98  GSQRFSRRVVDSIEDARVELADEPFKLELIDDKSGIDDPEIMEVGGNELTIYDNLDPRTG 157

Query: 691 ----SALCGGTHVSSTGEIMLLYIVSESS 715
               S LC G H+ +T  I    +   S+
Sbjct: 158 DKIWSDLCRGPHIPTTKHIPAFKLTRSSA 186


>gi|226366266|ref|YP_002784049.1| threonyl-tRNA synthetase [Rhodococcus opacus B4]
 gi|254783533|sp|C1B4B5|SYT_RHOOB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226244756|dbj|BAH55104.1| threonyl-tRNA synthetase [Rhodococcus opacus B4]
          Length = 685

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 38/234 (16%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
            +  V + AEG     + V    +  E  +    D        I HSA H+L  A+    
Sbjct: 36  DVVVVVRDAEGGLRDLSWVPDADVDVE-PVAANTDDGR---SVIRHSAAHVLAQAVQQEF 91

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAI 660
                  G  I  DG  +D    +P T  +L ++E  +  I+  +     R+++  E+A 
Sbjct: 92  PEAKLGIGPPI-KDGFYYDFAVERPFTPEDLANLEKRMKKIVKGSQRFSRRVVDSLEEAR 150

Query: 661 AS-----GAAALLGTKYN-DRVRVVSVEYEDGGVHSS-----------ALCGGTHVSSTG 703
           A          L+  K   D   ++ V   +  ++ +            LC G H+ +T 
Sbjct: 151 AELANEPFKLELIDDKSGIDDPEIMEVGGNELTIYDNLDPRTGEKVWGDLCRGPHIPTTK 210

Query: 704 EIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMGQDEKLKSLASF 748
            I    +    S  A  R         RI       A      Q++ L+ LA  
Sbjct: 211 HIPAFKLTR--SSAAYWRGNQDNADLQRIYGT----AWESAEAQEQHLELLAEA 258


>gi|296170866|ref|ZP_06852424.1| threonine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894491|gb|EFG74233.1| threonine--tRNA ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 677

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 30/199 (15%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HSA H+L  A+  +        G  IT DG  +D   ++P T  
Sbjct: 58  VAADTDEGR---SVIRHSAAHVLAQAVQGLFPDAKLGIGPPIT-DGFYYDFDVAEPFTPE 113

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 114 DLAALEKRMRQIVKEGQLFERRVYESKDQARAELAGEPYKLELVDDKSGDPD-IMEVGGD 172

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAI 726
           +   + +            LC G H+ +T  I    +   S+         A ++RI   
Sbjct: 173 ELTAYDNLNPRSRERVWGDLCRGPHIPTTRHIPAFKLTRSSAAYWRGDQKNASLQRIYG- 231

Query: 727 TGQRARSHLMGQDEKLKSL 745
           T   ++  L    E L+  
Sbjct: 232 TAWESQEALDRHLELLEEA 250


>gi|320011858|gb|ADW06708.1| threonyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331]
          Length = 658

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI-- 642
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK+IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELHPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAIEKKMQEIQK 129

Query: 643 --IAQNLPVVTRIMNRED-AIASGAAALLGTKY---NDRVRVVSVEYEDGGVHS------ 690
                +  VVT    RE+ A       L+G K    +D    V V   +  ++       
Sbjct: 130 RGQRFSRRVVTDEAAREELADEPYKLELIGIKGSASSDDGADVEVGGGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GDLCWKDLCRGPHLPTTRFIPAFKLM---RNAAAYWR 223


>gi|299144001|ref|ZP_07037081.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518486|gb|EFI42225.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 639

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 24/202 (11%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           VL  D +  +Q+   H+ +H++ +A+  +        G  I  +G  +D+         +
Sbjct: 62  VLKFDDKEGKQI-FWHTTSHVMAYAIKNLFSGSKFAIGPSI-ANGFYYDIDVEHRFAPED 119

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  +  II     V    + R +AI          K      +  +E E+  ++  
Sbjct: 120 LEKIESEMKKIIKSEYEVEKLSLPRAEAIKLFKDLEQNYKLE---LIEGIEDENISIYKI 176

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                LC G H+ +   I    ++S             I G  A       ++ L+ +  
Sbjct: 177 GDYYDLCKGPHLENVKAIKAFKLLS-------------IAG--AYWKGDENNKMLQRIYG 221

Query: 748 FLKVSQGNVVGRVEEIWEEYRK 769
                +  +   +E I E  ++
Sbjct: 222 ISFEKKKQLDEYIERIEEAEKR 243


>gi|294811598|ref|ZP_06770241.1| Threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|294324197|gb|EFG05840.1| Threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 719

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK+IE  + +I  
Sbjct: 132 LRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAIEKKMQEIQK 190

Query: 645 QNLPVVTRIMNREDAIASGA--------AALLGTKYNDRVRVVSVEYEDGGVHS------ 690
           +      R++  ++A    A          L G+  ++    V V   +  ++       
Sbjct: 191 RGQRFSRRVVGDDEAREELADEPYKLELIGLKGSASSEDGAAVEVGAGELTIYDNLDAKT 250

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ ST  I    ++      A   R
Sbjct: 251 GELCWKDLCRGPHLPSTRNIPAFKLM---RNAAAYWR 284


>gi|289608568|emb|CBI60567.1| unnamed protein product [Sordaria macrospora]
          Length = 80

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 10/75 (13%)

Query: 150 KIIRITTNDNFWSMAET-------GPCGPCSEIFFDQGECIPG---GLPGSSEEGERYIE 199
           ++      +N+WS            PCGP SE+F+D G  +     G P  + EG R++E
Sbjct: 5   RVFLYDAEENWWSRGGGLEGTPVGDPCGPDSEVFYDLGPELHDPSTGEPHPASEGGRFVE 64

Query: 200 IWNLVFMQFEQQNKQ 214
           I N VFM++ + ++ 
Sbjct: 65  IGNQVFMRYRRTSEG 79


>gi|258592606|emb|CBE68915.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS) [NC10
           bacterium 'Dutch sediment']
          Length = 680

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 24/151 (15%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HSA HL+  A+  +L S     G  I  DG  +D+   +P+T  +L +IE  + ++ 
Sbjct: 77  MLRHSAAHLMAAAVQKLLPSSKFAIGPAIQ-DGFYYDIEPPRPLTQDDLPAIEAAMRELS 135

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY-------------------NDRVRVVSVEYE 684
            Q LP V   +  ++AIA  AA     K                    ++    V    +
Sbjct: 136 EQRLPFVRCEVPLDEAIAKVAALNQPYKIELLETIRDRVTAPSGPVQEDELEHEVDPAAQ 195

Query: 685 DGGVHSS----ALCGGTHVSSTGEIMLLYIV 711
               +++     LC G HV  T  +    + 
Sbjct: 196 RASFYTTGDFIDLCRGPHVLDTSVVRFFRLT 226


>gi|322389968|ref|ZP_08063508.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
 gi|321143404|gb|EFX38842.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 903]
          Length = 647

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|326780460|ref|ZP_08239725.1| threonyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
 gi|326660793|gb|EGE45639.1| threonyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1]
          Length = 658

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            LR   S+             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 50  ELRDGESVEPVEISSEDGLNILRHSTAHVMAQAVQELFPDAKLGIGPPV-KDGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKY---NDR 675
            KP T  +LK+IE  + +I  +      R+++ E A            L+G K    +D 
Sbjct: 109 EKPFTPEDLKAIEKKMQEIQKRGQKFSRRVVSDEAAREELADEPYKLELIGIKGSASSDD 168

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ +T  I    ++      A   R
Sbjct: 169 GADVEVGGGELTIYDNLDPKTGDLCWKDLCRGPHLPTTRFIPAFKLM---RNAAAYWR 223


>gi|154344603|ref|XP_001568243.1| threonyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065580|emb|CAM43350.1| putative threonyl-tRNA synthetase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 789

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 575 IDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D+ +        HS++H+L +AL  I  + +S  G  +   G  ++   ++P++ ++ K
Sbjct: 107 LDWDDEDAHEVFWHSSSHVLGYALERIFDTKLSV-GPALKEGGFFYEGLTNRPVSESDYK 165

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IE  + +++ Q +P     +++EDA+         +K      +++ +  DGG  +   
Sbjct: 166 AIESAMQELVKQKMPYQRLEVSKEDALRLFGYTEFKSK------ILASKVPDGGTCTVYR 219

Query: 694 CG-------GTHVSSTGEIMLLYIVSESS 715
           CG       G H+  TG +    +   SS
Sbjct: 220 CGMLIDPCRGPHLPDTGRVKAFAVTKNSS 248


>gi|255008477|ref|ZP_05280603.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 3_1_12]
 gi|313146205|ref|ZP_07808398.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
 gi|313134972|gb|EFR52332.1| threonine-tRNA ligase [Bacteroides fragilis 3_1_12]
          Length = 646

 Score = 63.6 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 18/195 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+VL      + + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PINEDASVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRV 678
            + +    +L +IE  + +++A+   VV R + + DA+        G  Y       +  
Sbjct: 109 GEAVIKESDLPAIEAKMAELVAKKEVVVRRDIAKNDALKMFGDR--GETYKCELISELED 166

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT--GQ 729
             +     G  +  LC G H+ +T  I  + + S +         R  + RI  IT   +
Sbjct: 167 GHITTYTQGDFTD-LCRGPHLMTTAPIKAIKLTSVAGAYWRGHEDRKMLTRIYGITFPKK 225

Query: 730 RARSHLMGQDEKLKS 744
           +     +   E+ K 
Sbjct: 226 KMLDEYLALMEEAKK 240


>gi|330445250|ref|ZP_08308902.1| metal-dependent hydrolase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489441|dbj|GAA03399.1| metal-dependent hydrolase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 291

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 84/270 (31%), Gaps = 57/270 (21%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------- 545
           + +++    +  +  VV   TPF+  +        D G    D   +++ D         
Sbjct: 19  ESQVLMMIPNNGQYYVVTQCTPFHPVSHIWPDHPADKGQISFDEQSVEVMDCVVGAVELS 78

Query: 546 -----------VQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATH- 591
                      V++  EG       V  G         + LT++   ++ LS  HSA H 
Sbjct: 79  TQTLFVAQDIPVKRDTEGWVFVVVHVMSGAVTFTVGDIITLTVNEAYQQSLSRGHSAGHL 138

Query: 592 -------LLHHALSTILGSHVSQNG-----------SCITPDGLRFDVTHSKPITSAELK 633
                  +LHHA      S   + G           S +TPD         K +    L 
Sbjct: 139 SSLALNKVLHHAFWRKEPSRKDELGYYDFHSYAQEKSQVTPDLSTDTYRLGKTLRKRGLN 198

Query: 634 SIE---DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           S E         ++ N  +   +               G    D         ++G +  
Sbjct: 199 SGELLTALDEVAVSMNQQLSQWLT----LKTPVVMRREGEHLTDSRYWQCDLAQEGCIEI 254

Query: 691 SALCGGTHVSSTGE----IMLLYIVSESSI 716
              CGGTHVSS  E     +   ++SE  I
Sbjct: 255 --PCGGTHVSSLAEYSAITVSFEVISEQEI 282


>gi|330466868|ref|YP_004404611.1| threonyl-tRNA synthetase [Verrucosispora maris AB-18-032]
 gi|328809839|gb|AEB44011.1| threonyl-tRNA synthetase [Verrucosispora maris AB-18-032]
          Length = 666

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  I        G  I  +G  +D    KP    +L  +E  + +II 
Sbjct: 75  LRHSTAHVLAQAVQDIFPEAKLGIGPPI-ENGFYYDFAVDKPFQPDDLAKLEKRMQEIIK 133

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKY-------NDRVRVVSVEYEDGGVHS------ 690
                   R  + ++A    AA     +         D   V+ V   +  ++       
Sbjct: 134 SGQRFRRRRFDSLDEAKVELAAEPFKLELIDVKGEGLDSSEVMEVGGGELTIYDNLAATE 193

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                S LC G H+ +T  I    ++      A   R
Sbjct: 194 DKVCWSDLCRGPHLPNTRLIGAFKLM---RSAAAYWR 227


>gi|253580110|ref|ZP_04857377.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848629|gb|EES76592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 653

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 23/189 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+A+H+L  A+ T+        G  I   G  +D     P +  +L +IE  +  II 
Sbjct: 70  LRHTASHVLAQAVQTLFPDAKVAIGPSIDT-GFYYDFDCP-PFSRDDLDAIEKEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +     +REDAIA          Y   +     E  +   +S      LC G H+ 
Sbjct: 128 KGAKIERFTKSREDAIAYFQEK--NEPYKVELIEDLPEGSEISFYSQGDWTDLCAGPHLM 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           S   +    ++S SS               A      ++  L  +      S+  +   +
Sbjct: 186 SVKGVKAFKLLSSSS---------------AYWRGSEKNAMLTRIYGTAYASKDELKEHL 230

Query: 761 EEIWEEYRK 769
           E++ E  ++
Sbjct: 231 EQMEEAKKR 239


>gi|294628375|ref|ZP_06706935.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
 gi|292831708|gb|EFF90057.1| threonyl-tRNA synthetase [Streptomyces sp. e14]
          Length = 659

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 24/179 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++   ++             + HS  H++  A+  I        G  I  DG  +D   
Sbjct: 50  EVKDGETVEGVEISSEDGLNILRHSTAHVMAQAVQEIFPEAKLGIGPPI-RDGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKY------ 672
            +P T  +LK IE  + +I  +      R+   +DA            L+G K       
Sbjct: 109 KEPFTPEDLKRIEKRMQEIQKRGQKFSRRVTTDDDARVELADEPYKLELIGLKGNAAQAA 168

Query: 673 ---------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                     +     +++ + G +    LC G H+ +T  I    ++      A   R
Sbjct: 169 DGADAEVGSGELTIYDNLDAKTGDLCWKDLCRGPHLPTTRNIPAFKLM---RSAAAYWR 224


>gi|157150881|ref|YP_001450077.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083628|sp|A8AWB7|SYT_STRGC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|157075675|gb|ABV10358.1| threonyl-tRNA synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 647

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|324993844|gb|EGC25763.1| threonine--tRNA ligase [Streptococcus sanguinis SK405]
 gi|324994835|gb|EGC26748.1| threonine--tRNA ligase [Streptococcus sanguinis SK678]
 gi|325687276|gb|EGD29298.1| threonine--tRNA ligase [Streptococcus sanguinis SK72]
 gi|325696135|gb|EGD38026.1| threonine--tRNA ligase [Streptococcus sanguinis SK160]
 gi|327474719|gb|EGF20124.1| threonine--tRNA ligase [Streptococcus sanguinis SK408]
          Length = 647

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGTIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|262282640|ref|ZP_06060408.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262261931|gb|EEY80629.1| threonyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 647

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++    +     R
Sbjct: 185 HVPSTGRIQIFHLL---HVAGAYWR 206


>gi|254489788|ref|ZP_05102983.1| threonyl-tRNA synthetase [Methylophaga thiooxidans DMS010]
 gi|224464873|gb|EEF81127.1| threonyl-tRNA synthetase [Methylophaga thiooxydans DMS010]
          Length = 673

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 12/170 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL  HA+  +  +     G  I  DG  +D+      T  +L SI+  +  +  
Sbjct: 81  IRHSTAHLFGHAVKQLFPATRMVIGPVI-EDGFYYDIDSEHRFTPDDLASIQQRMETLAN 139

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-VVSVEYEDGGVHSSA----LCGGTHV 699
               VV +   + DA A   A   G  Y  R+   +  + ++ G++       +C G HV
Sbjct: 140 TAYDVVLKKTPKADARALFEAR--GETYKVRLIDEMDDDVKNVGLYYHQEYVDMCRGPHV 197

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
            +          S + +     R +A      R +     +K K+L ++L
Sbjct: 198 PNMAFCKAF---SLTKLAGAYWRGDANNEMLQRIYGTAWSDK-KALKAYL 243


>gi|24379968|ref|NP_721923.1| threonyl-tRNA synthetase [Streptococcus mutans UA159]
 gi|73919830|sp|Q8DT12|SYT_STRMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|24377953|gb|AAN59229.1|AE014990_3 putative threonyl-tRNA synthetase [Streptococcus mutans UA159]
          Length = 649

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 94/260 (36%), Gaps = 21/260 (8%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  + G    +    +  +  +K   G F    I     +  + S+ +      
Sbjct: 6   FPDGAVREFEIGTTTSEIAESISKSLAKKALAGKFNGQLIDTTRAITQDGSIEIVTPDHE 65

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639
                + HSA HL   A   +        G  I           +  I++ +L  IE+ +
Sbjct: 66  DALDILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEM 125

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCG 695
             I+ +N P V   + +++A               ++++    +++  +        LC 
Sbjct: 126 KKIVKENFPSVREEVTKDEAREIFKNDPYKLELIEEHSEDAGGLTIYRQG---EYVDLCR 182

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G HV STG I + +++   ++     R ++      R +     +K K L S+LK     
Sbjct: 183 GPHVPSTGRIQVFHLL---NVAGAYWRGDSNNAMMQRIYGTAWFDK-KDLKSYLK----- 233

Query: 756 VVGRVEEIWEE-YRKLQLIH 774
              R+EE  E  +RKL    
Sbjct: 234 ---RLEEAKERDHRKLGKEL 250


>gi|327490276|gb|EGF22064.1| threonine--tRNA ligase [Streptococcus sanguinis SK1058]
          Length = 647

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGTIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|328867955|gb|EGG16336.1| putative alanyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 244

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 23/215 (10%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVNDIIAQ 645
           +A H+L  A+ T+LG+ V+ +  C      R  V +   +  ++  +K IE   N+I+  
Sbjct: 11  TACHILKGAVVTVLGTPVTASVECNNKVKGRLTVEYDSDVKPSDENVKRIEKEANNIVKA 70

Query: 646 NLPVVTRIMNREDAIASGAAAL-----LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           NLP+    M+R++A      +      +  K+     V ++   +    +   C   H+ 
Sbjct: 71  NLPLKAFSMDRKEAETKYTESKVNNTYIYDKFPVPESVTTLTLVEIENWNINCCPAQHLE 130

Query: 701 STGEIMLLYIVSESSIRAGIR--------RIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
            TG+I  + I     I    R        R E ++ +   +    QD+        +K  
Sbjct: 131 KTGDIGYIKI-----IGTNHRPQKKEFELRFEIVSKEAVEAEQAAQDKSRLEKEKKIKDE 185

Query: 753 QGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           Q  +      +E + +   ++ L + + K +   E
Sbjct: 186 QDRLKRESTNIELVTKRVMEITLANQQDKSKAITE 220


>gi|307692850|ref|ZP_07635087.1| threonyl-tRNA synthetase [Ruminococcaceae bacterium D16]
          Length = 589

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 20/201 (9%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
            + +  H+ +H++  A+  +        G  I  +G  +D+      T   L+ IE  + 
Sbjct: 16  YRQTYWHTCSHVMAQAVKRLWPEVKLAIGPSID-EGWYYDMDAPFAFTPEHLEQIEAEMK 74

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I  + L +    + R +A+        G  Y   +     E      +       LC G
Sbjct: 75  KICKEKLKLERFELPRAEALKF--MEEKGEPYKVELINDLPEDAHISFYKQGEFTDLCAG 132

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            H+            S   I+    ++ A     A        E L+ +       +  +
Sbjct: 133 PHLD-----------STGRIKGNALKLTAC--NAAYWRGDSNRETLQRIYGIAFPKKDEL 179

Query: 757 VGRVEEIWEEYRKLQLIHAKR 777
              ++ I E  ++      K 
Sbjct: 180 DAYLQRIEEAKKRDHRKLGKE 200


>gi|307103531|gb|EFN51790.1| hypothetical protein CHLNCDRAFT_56367 [Chlorella variabilis]
          Length = 594

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I HS  H++  A+  +        G      G  +D    +P+T  +L  I   +  I
Sbjct: 23  LRIRHSCAHIMAMAVQRLHKGAQVTIGPWTDR-GFFYDFDMPQPLTERDLPKIRKEMQRI 81

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           + +NLP V      E        ++L       + +  +       H   LC G HV++T
Sbjct: 82  LKKNLPFVREDAAGEPYKLEILDSILERDPQAPITIYHIGTPGSEDHWWDLCAGPHVAAT 141

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G+I+    +   S+     R
Sbjct: 142 GDILPDA-LDLESVAGAYWR 160


>gi|53712976|ref|YP_098968.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60681188|ref|YP_211332.1| threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|253563046|ref|ZP_04840503.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|265763073|ref|ZP_06091641.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|73919767|sp|Q5LEQ6|SYT_BACFN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73919768|sp|Q64VP2|SYT_BACFR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|52215841|dbj|BAD48434.1| threonyl-tRNA synthetase [Bacteroides fragilis YCH46]
 gi|60492622|emb|CAH07394.1| putative threonyl-tRNA synthetase [Bacteroides fragilis NCTC 9343]
 gi|251946822|gb|EES87104.1| threonyl-tRNA synthetase [Bacteroides sp. 3_2_5]
 gi|263255681|gb|EEZ27027.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_16]
 gi|301162677|emb|CBW22224.1| putative threonyl-tRNA synthetase [Bacteroides fragilis 638R]
          Length = 646

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 18/195 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+VL      + + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PINEDASVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRV 678
            + +    +L +IE  + +++A+   VV R + + DA+        G  Y       +  
Sbjct: 109 GEAVIKEADLPAIEAKMAELVAKKEAVVRRDIAKGDALKMFGDR--GETYKCELISELED 166

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT--GQ 729
             +     G  +  LC G H+ +T  I  + + S +         R  + RI  IT   +
Sbjct: 167 GHITTYTQGDFTD-LCRGPHLMTTAPIKAIKLTSVAGAYWRGHEDRKMLTRIYGITFPKK 225

Query: 730 RARSHLMGQDEKLKS 744
           +     +   E+ K 
Sbjct: 226 KMLDEYLALMEEAKK 240


>gi|224417829|ref|ZP_03655835.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253827169|ref|ZP_04870054.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313141370|ref|ZP_07803563.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|253510575|gb|EES89234.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
 gi|313130401|gb|EFR48018.1| threonyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491]
          Length = 605

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 25/177 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+  HL+  A+ ++        G  +  +G  +D   +  I   +L  IE  + +I  
Sbjct: 41  MRHTCAHLMAEAIKSLYPEAQFFVGPVV-EEGFYYDFRVNHKIGEEDLAKIESKMKEIAK 99

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG----VHSS----ALCGG 696
           +   +    + R++AI          K +D  + V      G     ++S      LC G
Sbjct: 100 KGEQITKYHLPRQEAIEKF-------KNDDLKQAVISRIPQGDGTLSIYSQGDFEDLCRG 152

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
            H+ +   +    +   +            + RI   A   + + +  + Q E+ K 
Sbjct: 153 PHLPTLKLLNAFKLTKIAGAYLGGDEKAEMLVRIYGIAFADKESLNQYLRQMEEAKK 209


>gi|41408814|ref|NP_961650.1| threonyl-tRNA synthetase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|73919807|sp|Q73WE4|SYT_MYCPA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41397173|gb|AAS05033.1| ThrS [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 684

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HSA H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 65  VAANTDEGR---SVIRHSAAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNRED------AIASGAAALLGTKYNDRVRVVSVEYE 684
           +L  +E  +  I+ +      R+   ++      A       L+  K  D   ++ V  +
Sbjct: 121 DLDKLEKRMRQIVKEGQLFSRRVYESKEQARAELAGEPYKLELVDDKSGDPD-IMEVGGD 179

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 180 ELTAYDNLNPRTRERVWGDLCRGPHIPTTRHIPAFKLTRSSA 221


>gi|297198372|ref|ZP_06915769.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
 gi|197714430|gb|EDY58464.1| threonyl-tRNA synthetase [Streptomyces sviceus ATCC 29083]
          Length = 658

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK+IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAIEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS--------GAAALLGTKYNDRVRVVSVEYEDGGVHS------ 690
           +      R++  E A               L G+  +D    V V   +  ++       
Sbjct: 130 RGQKFSRRVVTDEAAREELSDEPYKLELIGLKGSASSDDGADVEVGSGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ ST  I    ++      A   R
Sbjct: 190 GDLCWKDLCRGPHLPSTRAIPAFKLM---RNAAAYWR 223


>gi|182439796|ref|YP_001827515.1| threonyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|238689023|sp|B1W3F0|SYT_STRGG RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|178468312|dbj|BAG22832.1| putative threonyl-tRNA synthetase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 658

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            LR   S+             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 50  ELRDGESVEPVEISSEDGLNILRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKY---NDR 675
            KP T  +LK+IE  + +I  +      R+++ E A            L+G K    +D 
Sbjct: 109 EKPFTPEDLKAIEKKMQEIQKRGQKFSRRVVSDEAAREELADEPYKLELIGIKGSASSDD 168

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ +T  I    ++      A   R
Sbjct: 169 GADVEVGGGELTIYDNLDPKTGDLCWKDLCRGPHLPTTRFIPAFKLM---RNAAAYWR 223


>gi|326386620|ref|ZP_08208242.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208935|gb|EGD59730.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 663

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 68/177 (38%), Gaps = 19/177 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIA 644
            H   H+L  A+  +        G   T DG  +D   ++ P T  +L  IE  + +IIA
Sbjct: 76  RHDFAHVLAEAVQALFPGTQITFGPA-TDDGFYYDFAPAERPFTEEDLPVIEAKMREIIA 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-----ALCGGTHV 699
            + P+      R D IA   AA  G  +  +      E E+  V+ S      +C G H+
Sbjct: 135 ADKPLRREAWTRADLIARWEAA--GETFKAQWAAELPEGEELTVYWSGSDWFDMCRGPHL 192

Query: 700 SSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +STG  +     +   S          A + RI   TG   +  L     +L+  A 
Sbjct: 193 ASTGKLDPAAFKLTRVSGAYWRGDQNNAMLSRIYG-TGWLNKKQLDAHLTRLEEAAK 248


>gi|158336193|ref|YP_001517367.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
 gi|158306434|gb|ABW28051.1| threonyl-tRNA synthetase [Acaryochloris marina MBIC11017]
          Length = 616

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 64/218 (29%), Gaps = 38/218 (17%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + H+  H++  A+  +        G   T  G  +D    +  T  +L +I   +  II
Sbjct: 19  RLRHTCAHVMAMAVQNLFPETKVTIGPT-TETGFYYDFDRDQAFTPEDLDAISTQMRRII 77

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY-------------------NDRVRVVSVEYE 684
             NLP++   ++R+   A         K                     D  R    E E
Sbjct: 78  KANLPIIREQVDRDQMQAELEQLQEPYKLEILAQIPAGETITRYFIGSPDTGRTQHPEAE 137

Query: 685 D---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
                            LC G H++STGE+         S+     R     G   ++ L
Sbjct: 138 ASLIEPLPVAPNEFWWDLCSGPHLNSTGELHS-KAFMLESVAGAYWR-----GDETQAQL 191

Query: 736 MGQDEKLKSLASFLKV---SQGNVVGRVEEIWEEYRKL 770
                        LK     +     R   +  +  KL
Sbjct: 192 QRIYGTAWETPKQLKAYLHQKEEAQRRDHRLLGKNLKL 229


>gi|153214946|ref|ZP_01949729.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
 gi|124115019|gb|EAY33839.1| alanyl-tRNA synthetase [Vibrio cholerae 1587]
          Length = 57

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 8/48 (16%)

Query: 142 KISGLSADKIIRITTN--------DNFWSMAETGPCGPCSEIFFDQGE 181
           K  G+ AD+IIRI           DNFW M +TGPCGPC+EIF+D G+
Sbjct: 10  KKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGD 57


>gi|118462301|ref|YP_882672.1| threonyl-tRNA synthetase [Mycobacterium avium 104]
 gi|254775941|ref|ZP_05217457.1| threonyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|166225462|sp|A0QID4|SYT_MYCA1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118163588|gb|ABK64485.1| threonyl-tRNA synthetase [Mycobacterium avium 104]
          Length = 684

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HSA H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 65  VAANTDEGR---SVIRHSAAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 120

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNRED------AIASGAAALLGTKYNDRVRVVSVEYE 684
           +L  +E  +  I+ +      R+   ++      A       L+  K  D   ++ V  +
Sbjct: 121 DLDKLEKRMRQIVKEGQLFSRRVYESKEQARAELAGEPYKLELVDDKSGDPD-IMEVGGD 179

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 180 ELTAYDNLNPRTRERVWGDLCRGPHIPTTRHIPAFKLTRSSA 221


>gi|320109353|ref|YP_004184943.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
 gi|319927874|gb|ADV84949.1| threonyl-tRNA synthetase [Terriglobus saanensis SP1PR4]
          Length = 676

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 10/133 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A++ +       +G   T +G  +D+   KP T  +L +IE  + D++ 
Sbjct: 102 LRHSAAHVMATAITELYPEVKLGHGPA-TDNGFFYDIYREKPFTPDDLAAIEQRMADVVK 160

Query: 645 QNLPVVTRIMNREDAIASGAA------ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           ++ P +     RE A+A  AA           K+      VS+ Y++G       C G H
Sbjct: 161 RDEPFLRSYEPREQALADYAAHGEFMKQHFIEKFTHPGEEVSL-YKNGAFTD--FCRGPH 217

Query: 699 VSSTGEIMLLYIV 711
           V STG +    + 
Sbjct: 218 VPSTGRVKAYKVT 230


>gi|329115958|ref|ZP_08244675.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
 gi|326906363|gb|EGE53277.1| threonine--tRNA ligase [Streptococcus parauberis NCFD 2020]
          Length = 648

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 8/179 (4%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGQLIDTVRPITEDGSIEIVTPDHEDAFSVLRHSAAHLFAQAAKRLFPEIHL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  IT          +  I++ +L  IE+ +  I+ +N P +   +++++A+      
Sbjct: 93  GVGPAITEGFYYDTDNQAGQISNEDLPRIEEEMKKIVKENFPCIREEVSKDEALDIFKDD 152

Query: 667 LLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               +        +     Y  G      LC G HV STG I + +++   ++     R
Sbjct: 153 PYKVELISEHADDAAGLTIYRQGEF--VDLCRGPHVPSTGRIQVFHLL---NVAGAYWR 206


>gi|325106885|ref|YP_004267953.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967153|gb|ADY57931.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Planctomyces
           brasiliensis DSM 5305]
          Length = 729

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 15/185 (8%)

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
           I   +  QI DV +  + +      +   +L  +    L +         + HS  H++ 
Sbjct: 36  IAADVNGQIADVARPLQELVDDPTSISLKLLTVKDQASLGV---------MRHSCAHIMA 86

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A+  +        G   T  G  +D    + I+  +   IE  + +II++  P     +
Sbjct: 87  RAVMRLFPGTGLAFGPT-TGHGFYYDFDLDERISEEDFPRIEQEMANIISEGEPFERFAL 145

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYI 710
           +R++A+          K  + +R    ++ +   +       LC G H+   G+I    +
Sbjct: 146 SRDEAVELCEGMNQELKV-EHIRTGLSDHGNLSFYRQGEFVDLCRGPHIPRAGKIKAFKL 204

Query: 711 VSESS 715
           +S + 
Sbjct: 205 LSVAG 209


>gi|29833364|ref|NP_827998.1| threonyl-tRNA synthetase [Streptomyces avermitilis MA-4680]
 gi|73919829|sp|Q827U8|SYT_STRAW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29610487|dbj|BAC74533.1| putative threonyl-tRNA synthetase [Streptomyces avermitilis
           MA-4680]
          Length = 658

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++    +             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 50  EVKDGEEVEPVQISSEDGLNILRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDI----IAQNLPVVTRIMNRED-AIASGAAALLGTKY---NDR 675
           +KP T  +LK+IE  + +I       +  VVT    RE+ A       L+G K    ND 
Sbjct: 109 AKPFTPEDLKAIEKKMQEIQKRGQRFSRRVVTDEAAREELADEPYKLELIGIKGSASNDD 168

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ +T  I    ++      A   R
Sbjct: 169 GANVEVGSGELTIYDNLDAKTGDLCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 223


>gi|315084265|gb|EFT56241.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA2]
          Length = 689

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREGLAAYQQRIKEA 257


>gi|220961898|gb|ACL93386.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
          Length = 165

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 20/147 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A   +        G  I           S  I++ +L  IE+ +  I+ 
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQSGQISNEDLPRIEEEMKKIVK 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGV------HSSALCG 695
           +N P +   + +++A             ND  ++  +E    +DGG+          LC 
Sbjct: 64  ENFPSIREEVTKDEAREIFK--------NDPYKLELIEEHSEDDGGLTIYRQGEYVDLCR 115

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G HV STG I + +++   ++     R
Sbjct: 116 GPHVPSTGRIQIFHLL---NVAGAYWR 139


>gi|218259669|ref|ZP_03475318.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224962|gb|EEC97612.1| hypothetical protein PRABACTJOHN_00977 [Parabacteroides johnsonii
           DSM 18315]
          Length = 651

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 16/147 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  HS+ HL+  AL  +        G  I  +G  +DV     +    +  +IE  + +
Sbjct: 69  HAFWHSSAHLMAEALQELYPGIKFGIGPAI-ENGFYYDVDPGDAVIKEGDFPAIEAKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS------SALCG 695
           ++A+   +  + +++ DA+        G  Y      +  E EDG + +      + LC 
Sbjct: 128 LVAKKEEIKRQDISKADAMKMFGDR--GEVYKTE---LISELEDGKITTYTQGSFTDLCR 182

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G H+ +T  +  + I+S   +     R
Sbjct: 183 GPHLPNTSYLKAVKIMS---VAGAYWR 206


>gi|328946743|gb|EGG40881.1| threonine--tRNA ligase [Streptococcus sanguinis SK1087]
          Length = 647

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N+P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENVPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|313792096|gb|EFS40197.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA1]
 gi|313801952|gb|EFS43186.1| threonyl-tRNA synthetase [Propionibacterium acnes HL110PA2]
 gi|313812897|gb|EFS50611.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA1]
 gi|313838778|gb|EFS76492.1| threonyl-tRNA synthetase [Propionibacterium acnes HL086PA1]
 gi|314962753|gb|EFT06853.1| threonyl-tRNA synthetase [Propionibacterium acnes HL082PA1]
 gi|315077970|gb|EFT50021.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA2]
 gi|327453186|gb|EGE99840.1| threonyl-tRNA synthetase [Propionibacterium acnes HL092PA1]
          Length = 689

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREGLAAYQQRIKEA 257


>gi|193216931|ref|YP_002000173.1| threonyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
 gi|193002254|gb|ACF07469.1| threonyl-tRNA synthetase [Mycoplasma arthritidis 158L3-1]
          Length = 579

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 15/172 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI-- 642
           +NHS +HLL  A+  +  +     G  I  +G  +D    KP+  ++L  IE  ++ +  
Sbjct: 7   LNHSTSHLLAAAILKLYPNTKLAIGPAID-EGFYYDFEFEKPLLESDLPKIEKQMHKLAE 65

Query: 643 ---IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
              + + + V     + +         L   K  +      +  +        LC G HV
Sbjct: 66  QGYVMEKVDVQNYNFDNQPYKKEMFEELKKDK-KEITFYAYIHPKTKENLFVDLCVGNHV 124

Query: 700 SSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
            ST EI    ++S +       S    + RI       ++  L      ++ 
Sbjct: 125 ESTKEIKHFKLLSLAGAYWRGDSKNKMLTRIYGTC-WESQKELEEYLALVEE 175


>gi|116335011|ref|YP_802506.1| putative alanyl-tRNA synthetase [Candidatus Carsonella ruddii PV]
 gi|116235292|dbj|BAF35140.1| putative alanyl-tRNA synthetase [Candidatus Carsonella ruddii PV]
          Length = 328

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 94/228 (41%), Gaps = 27/228 (11%)

Query: 9   TTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCV 68
              L FF    +++L + + I   + TL+F NSG+   K             +++ Q CV
Sbjct: 2   KKILLFFSFYYYKILGTQN-INSTNKTLIFVNSGLASLKKFV----FRSNVEISSFQYCV 56

Query: 69  RAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYIT 128
           R  G +ND   +     H T F MLGNF+                L     L+ ++L+ T
Sbjct: 57  RMQGIYNDFK-LTNDGIHQTSFLMLGNFTKKNNINNFKKIKKILFL---IKLNFKKLFFT 112

Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP 188
           +   D     L   +       I    TN N W + + G CG   EI+            
Sbjct: 113 ININDYLNIILILILKININQVIF---TNKNIWKINKNGYCGFSLEIYI----------- 158

Query: 189 GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236
              +  ++ +EIWN+V + F ++ K +   L K  IDTG+GL R+  V
Sbjct: 159 ---KISKKLLEIWNIVNVSFIKKKK-KIKFLKKKIIDTGLGLNRIIYV 202


>gi|289425232|ref|ZP_06427009.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
 gi|289154210|gb|EFD02898.1| threonine--tRNA ligase [Propionibacterium acnes SK187]
          Length = 684

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 49  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 107

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 108 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 167

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 168 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 227

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 228 LQRIYG-TAWASREGLAAYQQRIKEA 252


>gi|311742315|ref|ZP_07716124.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
 gi|311313943|gb|EFQ83851.1| threonine--tRNA ligase [Aeromicrobium marinum DSM 15272]
          Length = 661

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 67/212 (31%), Gaps = 25/212 (11%)

Query: 564 ILRTEMSLVLT-IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +    ID  +   +   HS  H++  A+  +        G  IT DG  +D  
Sbjct: 50  ELEAGDVVEAVAIDSPDGLDILR-HSTAHVMAQAVQELFPEAKLGIGPPIT-DGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKY--NDR 675
            ++P    +L  IE  +  II +      R +  + A            L+G K    D 
Sbjct: 108 VAEPFVPEDLVKIESRMRKIIKEGQKFDRREVTDDQARVELADEPYKLELIGLKSTAGDV 167

Query: 676 VRVVSVEY------------EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                VE              DG V    LC G H+ +T  I    ++      A   R 
Sbjct: 168 AEGAGVEVGEGGLTIYDNLKRDGSVAWGDLCRGPHLPTTKRIPAFTLM---RSAAAYWRG 224

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           +    Q  R +      K    A   ++ +  
Sbjct: 225 DEKNKQLQRLYGTAWPTKEALEAHLFRIEEAQ 256


>gi|325275224|ref|ZP_08141186.1| synthetase, putative [Pseudomonas sp. TJI-51]
 gi|324099644|gb|EGB97528.1| synthetase, putative [Pseudomonas sp. TJI-51]
          Length = 160

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 18/102 (17%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--------------KAEGIFVHHA 558
           +    T  Y E GGQ  D G       +++   V+K              K  GI +H  
Sbjct: 37  IELQSTVAYPEGGGQEADYGIIELPIGKVRFVWVKKLYGSPIRLEGFKGGKLGGIIIHTV 96

Query: 559 IVERGILRTEMSLVL----TIDYQNRRQLSINHSATHLLHHA 596
             +   L  E+++ +    +ID Q R +L+++HSA+H L+ A
Sbjct: 97  HPDDLHLLDEVTVDMPARVSIDIQRRERLTLSHSASHFLYAA 138


>gi|125718378|ref|YP_001035511.1| threonyl-tRNA synthetase [Streptococcus sanguinis SK36]
 gi|166225508|sp|A3CP56|SYT_STRSV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|125498295|gb|ABN44961.1| Threonyl-tRNA synthetase, putative [Streptococcus sanguinis SK36]
          Length = 647

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQSEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|327331893|gb|EGE73630.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA3]
          Length = 689

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREGLAAYQQRIKEA 257


>gi|329954516|ref|ZP_08295607.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
 gi|328527484|gb|EGF54481.1| threonine--tRNA ligase [Bacteroides clarus YIT 12056]
          Length = 646

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 16/176 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +VL      + + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PINEDAEVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +      +L +IE  + +++A+   VV   +++ DA+        G  Y   + +  +E
Sbjct: 109 GEAAIKEADLPAIEKKMAELVARKEGVVRESISKTDALKMFGDR--GETYKCEL-ISELE 165

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 ++      LC G H+ +T  I  + + S +         R  + RI  IT
Sbjct: 166 DGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|313764410|gb|EFS35774.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA1]
 gi|313772208|gb|EFS38174.1| threonyl-tRNA synthetase [Propionibacterium acnes HL074PA1]
 gi|313807564|gb|EFS46051.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA2]
 gi|313810073|gb|EFS47794.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA1]
 gi|313815947|gb|EFS53661.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA1]
 gi|313818605|gb|EFS56319.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA2]
 gi|313820374|gb|EFS58088.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA1]
 gi|313822822|gb|EFS60536.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA2]
 gi|313825247|gb|EFS62961.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA1]
 gi|313827535|gb|EFS65249.1| threonyl-tRNA synthetase [Propionibacterium acnes HL063PA2]
 gi|313830403|gb|EFS68117.1| threonyl-tRNA synthetase [Propionibacterium acnes HL007PA1]
 gi|313833773|gb|EFS71487.1| threonyl-tRNA synthetase [Propionibacterium acnes HL056PA1]
 gi|314915402|gb|EFS79233.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA4]
 gi|314918317|gb|EFS82148.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA1]
 gi|314920127|gb|EFS83958.1| threonyl-tRNA synthetase [Propionibacterium acnes HL050PA3]
 gi|314925261|gb|EFS89092.1| threonyl-tRNA synthetase [Propionibacterium acnes HL036PA3]
 gi|314931649|gb|EFS95480.1| threonyl-tRNA synthetase [Propionibacterium acnes HL067PA1]
 gi|314955705|gb|EFT00107.1| threonyl-tRNA synthetase [Propionibacterium acnes HL027PA1]
 gi|314958104|gb|EFT02207.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA1]
 gi|314959956|gb|EFT04058.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA2]
 gi|314973405|gb|EFT17501.1| threonyl-tRNA synthetase [Propionibacterium acnes HL053PA1]
 gi|314976084|gb|EFT20179.1| threonyl-tRNA synthetase [Propionibacterium acnes HL045PA1]
 gi|314978527|gb|EFT22621.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA2]
 gi|314983896|gb|EFT27988.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA1]
 gi|314988078|gb|EFT32169.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA2]
 gi|314989885|gb|EFT33976.1| threonyl-tRNA synthetase [Propionibacterium acnes HL005PA3]
 gi|315085609|gb|EFT57585.1| threonyl-tRNA synthetase [Propionibacterium acnes HL002PA3]
 gi|315088339|gb|EFT60315.1| threonyl-tRNA synthetase [Propionibacterium acnes HL072PA1]
 gi|315095950|gb|EFT67926.1| threonyl-tRNA synthetase [Propionibacterium acnes HL038PA1]
 gi|315101418|gb|EFT73394.1| threonyl-tRNA synthetase [Propionibacterium acnes HL046PA1]
 gi|315105605|gb|EFT77581.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA1]
 gi|315108634|gb|EFT80610.1| threonyl-tRNA synthetase [Propionibacterium acnes HL030PA2]
 gi|327326232|gb|EGE68022.1| threonine--tRNA ligase [Propionibacterium acnes HL096PA2]
 gi|327443095|gb|EGE89749.1| threonyl-tRNA synthetase [Propionibacterium acnes HL013PA2]
 gi|327445877|gb|EGE92531.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA2]
 gi|327448141|gb|EGE94795.1| threonyl-tRNA synthetase [Propionibacterium acnes HL043PA1]
 gi|327450737|gb|EGE97391.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA3]
 gi|327453921|gb|EGF00576.1| threonyl-tRNA synthetase [Propionibacterium acnes HL083PA2]
 gi|328753425|gb|EGF67041.1| threonyl-tRNA synthetase [Propionibacterium acnes HL020PA1]
 gi|328754156|gb|EGF67772.1| threonyl-tRNA synthetase [Propionibacterium acnes HL087PA1]
 gi|328760808|gb|EGF74374.1| threonine--tRNA ligase [Propionibacterium acnes HL099PA1]
          Length = 689

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREGLAAYQQRIKEA 257


>gi|282882529|ref|ZP_06291150.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
 gi|281297671|gb|EFA90146.1| threonine--tRNA ligase [Peptoniphilus lacrimalis 315-B]
          Length = 636

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA+HL+ +A+ T+  +     G  I   G  +D+         + ++IE  + ++  ++
Sbjct: 72  HSASHLMAYAIETLYPNTKFAIGPAID-SGFYYDMDLDHRFVEEDFQAIEKKMIELARED 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVSST 702
           L +V   + R+ AI        G  Y   +     E E   ++     + LC G H+ ST
Sbjct: 131 LKIVRVDITRDAAIKYF--KEKGQDYKVELIEDLAEDEPITLYQMGEFTDLCRGPHLEST 188

Query: 703 GEIMLLYIVSESSIRAGIRR 722
            +I  + ++S   I     R
Sbjct: 189 KKIKAVKLLS---IAGAYWR 205


>gi|160878906|ref|YP_001557874.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
 gi|160427572|gb|ABX41135.1| threonyl-tRNA synthetase [Clostridium phytofermentans ISDg]
          Length = 652

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 24/202 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H+L  A+  +        G  I   G  +D   + P   A L ++E  +  II
Sbjct: 69  AYRHTTSHVLAQAVKRLYPDAKIAIGPSIDT-GFYYDFDVA-PFDRAALDALEQEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    + R +AI           Y   +     E      +S      LC G H+
Sbjct: 127 KEGAEITRFTLPRAEAIKF--MEEKEEPYKVELIRDLPEDSVISFYSQGDFVDLCAGPHL 184

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  I  + +++ S                A      +++ L  +         ++   
Sbjct: 185 MSTKNIKAIKLINSSG---------------AYWRGSEKNKMLTRVYGTAFTKNADLEEF 229

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + E+ +K       R+++L
Sbjct: 230 LNHL-EDIKKRDHNKLGREMEL 250


>gi|50842554|ref|YP_055781.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289426579|ref|ZP_06428319.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|295130636|ref|YP_003581299.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
 gi|73919815|sp|Q6A8U3|SYT_PROAC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50840156|gb|AAT82823.1| threonyl-tRNA synthetase [Propionibacterium acnes KPA171202]
 gi|289160223|gb|EFD08387.1| threonine--tRNA ligase [Propionibacterium acnes J165]
 gi|291376551|gb|ADE00406.1| threonine--tRNA ligase [Propionibacterium acnes SK137]
          Length = 684

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 49  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 107

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 108 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 167

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 168 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 227

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 228 LQRIYG-TAWASREGLAAYQQRIKEA 252


>gi|315080595|gb|EFT52571.1| threonyl-tRNA synthetase [Propionibacterium acnes HL078PA1]
          Length = 689

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREGLAAYQQRIKEA 257


>gi|88856273|ref|ZP_01130933.1| threonyl-tRNA synthetase [marine actinobacterium PHSC20C1]
 gi|88814592|gb|EAR24454.1| threonyl-tRNA synthetase [marine actinobacterium PHSC20C1]
          Length = 653

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 37/211 (17%)

Query: 569 MSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
            ++   TID  +   +   HSA H+   A+ TI        G  +T DG  +D    +P 
Sbjct: 34  DAVEAVTIDSPDGLNILR-HSAAHVAAQAIQTINPEAKLGIGPPVT-DGFYYDFDVEEPF 91

Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTK----------- 671
           T  +LK+I   ++ II Q      R++   +A            L+G K           
Sbjct: 92  TPEDLKAITKAMDRIIRQGQRFQRRVVTEAEAREELANEPYKLELIGLKGAVSEGDADSD 151

Query: 672 -------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR------- 717
                    +     +++ + G V+   LC G H+ +T  I   + ++ ++         
Sbjct: 152 NESVEVGGTELTIYDNIDGKTGEVYWKDLCRGPHLPNTRMIGNGWSLTRTAAAYWRGSEK 211

Query: 718 -AGIRRIEAI---TGQRARSHLMGQDEKLKS 744
              ++R+      T    R +   Q+E LK 
Sbjct: 212 NKQLQRVYGTAWPTKDELREYQARQEEALKR 242


>gi|268316191|ref|YP_003289910.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
 gi|262333725|gb|ACY47522.1| threonyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
          Length = 662

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 18/146 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
             HS  HL+  AL  +        G  I   G  +DV    + +++ +L  IE+ + ++ 
Sbjct: 80  YWHSTAHLMAEALEALYPGVKFGIGPPI-EQGFYYDVDLGGRKLSAEDLARIEEKMRELA 138

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGG 696
            +++P     +++++A+          K  D  +V  +E  + G  +       + LC G
Sbjct: 139 RRDVPYERIPVSKQEALEYF------KKKGDPYKVELIEELEDGTITFYRQGNFTDLCRG 192

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            HV STG I  + ++   ++     R
Sbjct: 193 PHVPSTGYIKHVKLL---NVAGAYWR 215


>gi|42526600|ref|NP_971698.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
 gi|73919840|sp|Q73NR2|SYT_TREDE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|41816793|gb|AAS11579.1| threonyl-tRNA synthetase [Treponema denticola ATCC 35405]
          Length = 585

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 8/142 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HS  H++  A+  +        G  I   G  +D    +PI + +L +IE  +  I+
Sbjct: 13  TLRHSTAHVMAEAVVNLFPGTKVAIGPAIDY-GFYYDFELPRPINNDDLPAIEKEMRKIL 71

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                    +++RE A+                     +     G  +  LC G HV S 
Sbjct: 72  TTRSNFEKEVISREKALEMFKDQPFKIELIKGLPADEEISIYKSGEFTD-LCRGPHVCSM 130

Query: 703 GEIML--LYIVSESSIRAGIRR 722
            +I      ++    I     R
Sbjct: 131 ADINAQGFKLMK---IAGAYWR 149


>gi|257456688|ref|ZP_05621878.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
 gi|257445881|gb|EEV20934.1| threonyl-tRNA synthetase [Treponema vincentii ATCC 35580]
          Length = 586

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 4/139 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+  +        G  I   G  +D     PIT  +L  IE  +  +++
Sbjct: 14  IRHSIAHIMAEAVMNLFPGTKVAIGPAI-EHGFYYDFDLPTPITQNDLARIEKEMRRLLS 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
                V  ++ R+ A+             ND      +     G     LC G HV+++ 
Sbjct: 73  TPQNFVKEVVTRQQALDLFKDQPFKCELINDLPPDAEISIYRSGNFVD-LCKGPHVANSK 131

Query: 704 EIMLLYIVSESSIRAGIRR 722
           EI          I     R
Sbjct: 132 EINA-QSFKLEKIAGAYWR 149


>gi|15807075|ref|NP_295804.1| threonyl-tRNA synthetase [Deinococcus radiodurans R1]
 gi|22654147|sp|Q9RSP3|SYT_DEIRA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6459875|gb|AAF11630.1|AE002044_3 threonyl-tRNA synthetase [Deinococcus radiodurans R1]
          Length = 649

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 75/208 (36%), Gaps = 31/208 (14%)

Query: 585 INHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             HS  H++  A+             + +       +G   D    +P+   +L  IE  
Sbjct: 71  FRHSLGHVMSQAVGEYYKAKGYGPDAIKRGVGPYIENGWYQDFDLPEPLKEEDLPEIEKI 130

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALC 694
           + DII + L +  R +++++A+A          Y   +     + E    +S      LC
Sbjct: 131 MRDIIGRGLDITRREISKDEALAQF----PHDPYKAELIEGLPDDEPITFYSQGDYTDLC 186

Query: 695 GGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            G H  STG++     ++S S                A      ++  L+ +      +Q
Sbjct: 187 RGPHFPSTGKLPQSFKLMSTSG---------------AYWRGNEKNPILQRIYGVAFATQ 231

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             +   + ++ EE ++       ++L+L
Sbjct: 232 KELDEYLFQL-EEAKRRDHRKLGKELEL 258


>gi|77410413|ref|ZP_00786787.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
 gi|77170978|gb|EAO74473.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1]
          Length = 76

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            AL  + G H +Q GS    + LRFD TH + +++ EL+ IE  VN+ I   L + T   
Sbjct: 2   AALPMLFGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNALTITTTET 61

Query: 655 NREDAIASG 663
           + E A   G
Sbjct: 62  DVETAKEMG 70


>gi|220961892|gb|ACL93383.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
          Length = 165

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 20/147 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I+ 
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHFGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKIVK 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGV------HSSALCG 695
           +N P +   + +++A             ND  ++  +E    +DGG+          LC 
Sbjct: 64  ENFPSIREEVTKDEAREIFK--------NDPYKLELIEEHSEDDGGLTIYRQGEYVDLCR 115

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G HV STG I + +++   ++     R
Sbjct: 116 GPHVPSTGRIQIFHLL---NVAGAYWR 139


>gi|187918575|ref|YP_001884138.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
 gi|238689297|sp|B2S162|SYT_BORHD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119861423|gb|AAX17218.1| threonyl-tRNA synthetase [Borrelia hermsii DAH]
          Length = 583

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 23/201 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT  +L  IE  + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLELFPNTKIAIGPPI-KDGFYYDFDFEKHITEDDLLLIEQKMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
              P V  ++ +E A+           Y   +       ++  ++ S     LC G HV 
Sbjct: 73  TGSPFVKEVITKEQAL----MLFKDEPYKMDLIRGLAITDEISIYKSHNFTDLCKGPHVD 128

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           + G+I        +SI     R               +++ L  +   L  ++ ++   +
Sbjct: 129 NMGKIDP-KAFKLTSIAGAYWR------------GDEKNKMLTRIYGTLWNNEKDLKAYL 175

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
            ++ EE ++       R+L L
Sbjct: 176 -KLREEIKRRDHRKLGRELDL 195


>gi|328754594|gb|EGF68210.1| threonyl-tRNA synthetase [Propionibacterium acnes HL025PA2]
          Length = 689

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 26/185 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+  +        G  IT DG  +D  + +P+T   L  +E  +  I+ 
Sbjct: 75  IRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGNIEPVTPEVLSELEKRMKRIVK 133

Query: 645 QN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVRVVSVEYEDGGVHS-------- 690
           +N      V T    RE+ A       L+GTK        V V   +  ++         
Sbjct: 134 ENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGASVEVGGGELTIYDNVRRNGEV 193

Query: 691 --SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------IRRIEAITGQRARSHLMGQDE 740
               LC G HV ST  +     +   S +   G      ++RI   T   +R  L    +
Sbjct: 194 AWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQLQRIYG-TAWASREGLAAYQQ 252

Query: 741 KLKSL 745
           ++K  
Sbjct: 253 RIKEA 257


>gi|327461002|gb|EGF07335.1| threonine--tRNA ligase [Streptococcus sanguinis SK1057]
          Length = 647

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|325690794|gb|EGD32795.1| threonine--tRNA ligase [Streptococcus sanguinis SK115]
          Length = 647

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + +++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|312864463|ref|ZP_07724694.1| threonine--tRNA ligase [Streptococcus downei F0415]
 gi|311099590|gb|EFQ57803.1| threonine--tRNA ligase [Streptococcus downei F0415]
          Length = 651

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 20/233 (8%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G      I     +  + SL +           + HSA HL   A   +      
Sbjct: 33  KKALAGKLNDRLIDTTRPITQDGSLEIVTPDHEDALGILRHSAAHLFAQAARRLFPDIHL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           +  I++ +L  IE+ +  I+ +N P +   + ++ A       
Sbjct: 93  GVGPAIEDGFYYDTDNGAGQISNEDLPKIEEEMKKIVKENFPSIREEVTKDQAREIFKND 152

Query: 667 LLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                   ++++    +++  +        LC G HV STG I + +++   ++     R
Sbjct: 153 PYKLELIEEHSEDAGGLTIYRQG---EYVDLCRGPHVPSTGRIQVFHLL---NVAGAYWR 206

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE-YRKLQLIH 774
             +      R +     +K K L ++LK        R+EE  E  +RKL    
Sbjct: 207 GNSDNAMMQRIYGTAWFDK-KDLKAYLK--------RLEEAKERDHRKLGKEL 250


>gi|67920215|ref|ZP_00513735.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
 gi|67857699|gb|EAM52938.1| Threonyl-tRNA synthetase, class IIa [Crocosphaera watsonii WH 8501]
          Length = 642

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 70/238 (29%), Gaps = 49/238 (20%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+  H++  A+  +        G   T  G  +D    +P    ELK I   +  II
Sbjct: 38  RIRHTCAHVMAMAVQILFPETKVTIGPT-TDKGFYYDFDRPQPFAPEELKKITKQMRFII 96

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-------------- 689
             NLP++   + RE+  A      LG  Y   +     E E    +              
Sbjct: 97  KANLPIIREEITREEMKAE--IEQLGEPYKLEILDSIPEGETITRYYIGSTDGDGLPNVG 154

Query: 690 -----------------------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                                     LC G H++ TGEI      +  S+     R    
Sbjct: 155 QKLKDALPEPSSIKPVKIPSTVSWWDLCAGHHINYTGEINP-KAFALESVAGAYWR---- 209

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
            G   ++ L             L      +  R E    ++RKL        +Q N  
Sbjct: 210 -GDETKAQLQRIYGTAWETPEQLDAY---LKQREEAKRRDHRKLGKELKLFSIQENAG 263


>gi|254391301|ref|ZP_05006505.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|326440214|ref|ZP_08214948.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
 gi|197704992|gb|EDY50804.1| threonyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064]
          Length = 658

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK+IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAIEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIASGA--------AALLGTKYNDRVRVVSVEYEDGGVHS------ 690
           +      R++  ++A    A          L G+  ++    V V   +  ++       
Sbjct: 130 RGQRFSRRVVGDDEAREELADEPYKLELIGLKGSASSEDGAAVEVGAGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ ST  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPSTRNIPAFKLM---RNAAAYWR 223


>gi|312868227|ref|ZP_07728427.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
 gi|311095972|gb|EFQ54216.1| threonine--tRNA ligase [Streptococcus parasanguinis F0405]
          Length = 647

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           + +N P +   + ++ A               +++D    +++  +        LC G H
Sbjct: 129 VKENFPSIREEVTKDQAREIFKNDPYKLELIEEHSDDEGGLTIYRQG---EYVDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           V STG I + +++   ++     R
Sbjct: 186 VPSTGRIQIFHLL---NVAGAYWR 206


>gi|302527884|ref|ZP_07280226.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
 gi|302436779|gb|EFL08595.1| threonyl-tRNA synthetase [Streptomyces sp. AA4]
          Length = 678

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 25/159 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  +  DG  +D    KP T  +L+ +E  +  I+ 
Sbjct: 77  IRHSAAHVLAQAVQQEFPDAKLGIGPPV-RDGFYYDFAVEKPFTPEDLQKLEKRMKQIVK 135

Query: 645 QNLPVVTRIM-NREDAIASGAAALLGTKY---------NDRVRVVSVEYEDGGVHS---- 690
                  R+  + ++A           +           D   ++ V   +  ++     
Sbjct: 136 GAQQFSRRVFASTDEAKEELKDEPFKLELVDLKSEKDTVDTSEIMEVGGGELTIYDNLDP 195

Query: 691 -------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  S LC G HV +T  I    +     + A   R
Sbjct: 196 RTKERVWSDLCRGPHVPTTKFIPAFKLT---RVAAAYWR 231


>gi|47157012|gb|AAT12378.1| alanyl-tRNA synthetase [Antonospora locustae]
          Length = 208

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 21/153 (13%)

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           CGG HV  T EIM + I+SE+ +  G RRI A+TG+ A        ++L   A+      
Sbjct: 1   CGGVHVKKTSEIMRIRIISENGVSLGTRRIVALTGEAALK-AEEDAKRLIECATMESAVP 59

Query: 754 -------------------GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
                                   RV+ I E+ ++   I  + K +  + D         
Sbjct: 60  TIPLVEKRQIERIKEARAIEQDARRVKAIVEQLKRANEIVLQIKTKTLMADSKERTFVSF 119

Query: 795 NFMSHIISEVDS-KELKSVMDALQKKIQSGIIM 826
              S  +S  D  K+++ VMD  +K   +GI  
Sbjct: 120 ECDSSALSSKDIKKQVRKVMDIFEKNNINGIAY 152


>gi|315098581|gb|EFT70557.1| threonyl-tRNA synthetase [Propionibacterium acnes HL059PA2]
          Length = 689

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT DG  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-DGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASRDGLAAYQQRIKEA 257


>gi|283457978|ref|YP_003362585.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
 gi|283134000|dbj|BAI64765.1| threonyl-tRNA synthetase [Rothia mucilaginosa DY-18]
          Length = 706

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 32/193 (16%)

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D  ++ +  V     G+ V         L    S+     ++      + HSA H++
Sbjct: 57  LFADDPKIVVARV----NGVLVDL----SHELSAGDSVEPVFIHEPDGLNVLRHSAAHVM 108

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+           G  IT DG  FD   ++P T  +LK IE ++  II        R+
Sbjct: 109 AQAVQEYRKDAKLGIGPYIT-DGFYFDFDVAEPFTPEDLKKIEKSMIKIIKSGQLFRRRV 167

Query: 654 MNREDAIASGAAALLGTKY-----------------------NDRVRVVSVEYEDGGVHS 690
           +  ++A+A  A      +                         +     +V  + G    
Sbjct: 168 VTHDEAVAEMANEPYKLELLSLTQGPGSGADAAEGASVEVGEGEITIYDNVHPKTGETVW 227

Query: 691 SALCGGTHVSSTG 703
             LC G H+ +T 
Sbjct: 228 KDLCRGPHLPNTK 240


>gi|295839903|ref|ZP_06826836.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
 gi|197696732|gb|EDY43665.1| threonine-tRNA ligase [Streptomyces sp. SPB74]
          Length = 658

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  I        G  +  DG  +D    KP T  +LK++E  + +I  
Sbjct: 71  LRHSTAHVMAQAVQEIFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAVEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIASGA--------AALLGTKYNDRVRVVSVEYEDGGVHS------ 690
           +      R+++ ++A    A          L G   +D    V V   +  ++       
Sbjct: 130 RGQRFARRVVSEDEAREELAAEPYKLELIGLKGGSASDDGSDVEVGGNELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPTTRLIPAFKLM---RNAAAYWR 223


>gi|325000692|ref|ZP_08121804.1| threonyl-tRNA synthetase [Pseudonocardia sp. P1]
          Length = 682

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 71/204 (34%), Gaps = 25/204 (12%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           ++    D        I HSA H+L  A+  +        G  +T DG  +D     P T 
Sbjct: 63  AVAANTDEGR---SVIRHSAAHVLAQAVQQLFPKARLGIGPPVT-DGFYYDFDVDTPFTP 118

Query: 630 AELKSIEDNVNDIIAQNLPVV-TRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEY 683
            +LK IE  +  I+         R  +R++A A          L+  K +D   V+ V+ 
Sbjct: 119 EDLKKIESAMKKIVKAGQKFSRRRFADRDEARAELADEPYKLELVDLKGSDDSEVMEVDS 178

Query: 684 E------------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
                         G V  S LC G H+ +T  +    +       A   R +    Q  
Sbjct: 179 SGELTVYDNVHAHTGDVVWSDLCRGPHLPTTKFVPAFTLT---RSAAAYWRGDQRNAQLQ 235

Query: 732 RSHLMGQDEKLKSLASFLKVSQGN 755
           R +    + +    A   +V++  
Sbjct: 236 RIYGTAWESQEAQDAYLERVAEAE 259


>gi|92111808|gb|ABE73648.1| threonyl-tRNA synthetase [Streptococcus salivarius]
          Length = 165

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I+ 
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNEAGQISNEDLSRIEEEMKKIVK 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHV 699
           +N P +   + +++A            Y   +     E E G           LC G HV
Sbjct: 64  ENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHV 119

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            STG I + +++   ++     R
Sbjct: 120 PSTGRIQVFHLL---NVAGAYWR 139


>gi|84496326|ref|ZP_00995180.1| threonyl-tRNA synthetase [Janibacter sp. HTCC2649]
 gi|84383094|gb|EAP98975.1| threonyl-tRNA synthetase [Janibacter sp. HTCC2649]
          Length = 661

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 25/180 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +L    ++      +      + HSA H+L  A+  +        G  +  DG  +D   
Sbjct: 47  VLADGDTVEPVTAQEQDGLDVLRHSAAHVLAQAVQQLKPDAKLGIGPPV-RDGFYYDFDV 105

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKYNDRVR- 677
           ++P    +LK++E ++  II +    V R ++ +DA+           L+G K       
Sbjct: 106 AEPFQPDDLKALEKSMQKIINEGQTFVRREISDDDALVELKDEPYKCELIGLKGGSASEA 165

Query: 678 ----VVSVEYEDGGVHSS----------ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
                V V      ++ +           LC G HV ST  +     ++      A   R
Sbjct: 166 ADGADVEVGGAQLTIYDNVRRDGTKAWGDLCRGPHVPSTKVLGNAFKVM---RSAAAYWR 222


>gi|92111782|gb|ABE73635.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111784|gb|ABE73636.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111788|gb|ABE73638.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111790|gb|ABE73639.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111792|gb|ABE73640.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111794|gb|ABE73641.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111796|gb|ABE73642.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111798|gb|ABE73643.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111800|gb|ABE73644.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111802|gb|ABE73645.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111804|gb|ABE73646.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111806|gb|ABE73647.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111814|gb|ABE73651.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111816|gb|ABE73652.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
 gi|92111818|gb|ABE73653.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
 gi|92111820|gb|ABE73654.1| threonyl-tRNA synthetase [Streptococcus salivarius]
          Length = 165

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I+ 
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNEAGQISNEDLPRIEEEMKKIVK 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHV 699
           +N P +   + +++A            Y   +     E E G           LC G HV
Sbjct: 64  ENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHV 119

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            STG I + +++   ++     R
Sbjct: 120 PSTGRIQVFHLL---NVAGAYWR 139


>gi|296270051|ref|YP_003652683.1| threonyl-tRNA synthetase [Thermobispora bispora DSM 43833]
 gi|296092838|gb|ADG88790.1| threonyl-tRNA synthetase [Thermobispora bispora DSM 43833]
          Length = 657

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 29/166 (17%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           +TID  + R +   HS  H+L  A+  +        G  I  +G  +D    +P T  +L
Sbjct: 60  VTIDSGDGRAILR-HSTAHVLAQAVQELFPEAKLGIGPPI-ENGFYYDFDVREPFTPEDL 117

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS------------ 680
           K IE  + +II Q      R +  E A       L G  Y   +  +             
Sbjct: 118 KRIEKRMREIIKQGQLFRRRPVTDEQAREE----LAGEPYKLELIELKGAAGSEDGANVE 173

Query: 681 -----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                      ++ + G V    LC G H+ ST  I    ++  S 
Sbjct: 174 VGAGQLTIYDNIDPKTGEVCWKDLCRGPHLPSTKAIPAFALMRSSG 219


>gi|291299890|ref|YP_003511168.1| threonyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
 gi|290569110|gb|ADD42075.1| threonyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728]
          Length = 668

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 21/148 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +        G  I  DG  +D   ++P    +LK +E  + +II 
Sbjct: 75  LRHSCAHVLAQAVQDLHKDAKLGIGPPI-RDGFYYDFDVAEPFHPDDLKKLEKRMQEIIK 133

Query: 645 QNLPVVTRIMNREDA---------IASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
                  R    +DA                + G    D   V+ V   D  ++ +    
Sbjct: 134 SGQRFSRREFASKDAARAELADEPYKLLLVDIKGDDEVDADEVMEVGGGDLTIYDNLDAK 193

Query: 692 -------ALCGGTHVSSTGEIMLLYIVS 712
                   LC G H+ ST  I    ++ 
Sbjct: 194 SGDRVWGDLCRGPHLPSTRHIPAFKLMR 221


>gi|293400866|ref|ZP_06645011.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305892|gb|EFE47136.1| threonine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 577

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS-AELKSIE 636
           +N +   +NHS  H++  A+  +        G  I+ DG  +D+     +    +L  IE
Sbjct: 6   ENEQLSMLNHSCAHMMAQAVKRLYPQAKFWVGPVIS-DGFYYDIDLGDDVIKDEDLPKIE 64

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
             +  I      +V + +++E+A+   A           +   ++     G     LC G
Sbjct: 65  KEMKKIAKDGKRIVRKEISKEEALEMFADDPYKIDLIQDLEDGTITCYQQGEFID-LCRG 123

Query: 697 THV 699
            HV
Sbjct: 124 PHV 126


>gi|254172975|ref|ZP_04879649.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
 gi|214033131|gb|EEB73959.1| alanyl-tRNA synthetase [Thermococcus sp. AM4]
          Length = 153

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H++  A+  +LG       S  +  +     V   +  T  E+  IE   N+ +
Sbjct: 9   RTHTALHVVKGAVVKVLGEKAKWTASTYVKGNRGVLAVKFDRKPTPEEVAEIERLANEKV 68

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+PV    + RE+A       +    +     V +++       +   C   H  +TG
Sbjct: 69  KENVPVKVYELPREEAEKRFGEDMYDL-FPVPEEVKTLKVVVIKGWNVNACNKEHTKTTG 127

Query: 704 EIMLLYIVS 712
           EI  + I  
Sbjct: 128 EIGEIKIRK 136


>gi|329939431|ref|ZP_08288767.1| threonyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301660|gb|EGG45554.1| threonyl-tRNA synthetase [Streptomyces griseoaurantiacus M045]
          Length = 666

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +        G  I  +G  +D   +KP    +LK +E  + +II 
Sbjct: 75  LRHSTAHVLAQAVQDVFPEAKLGIGPPI-ENGFYYDFDVAKPFQPDDLKRLEKRMQEIIK 133

Query: 645 QNLPVVTR-IMNREDAI--------ASGAAALLGTKYNDRVRVV---------SVEYEDG 686
           Q      R   + EDA               L G    + V  V         +++ +DG
Sbjct: 134 QGQRFQRRRYDSLEDAKDQLAKEPYKLELVDLKGEVDAEEVMEVGAGELTAYDNLDPKDG 193

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                 LC G H+ ST  I    ++      A   R
Sbjct: 194 HRVWGDLCRGPHLPSTRHIPAFKLM---RSAAAYWR 226


>gi|327463110|gb|EGF09431.1| threonine--tRNA ligase [Streptococcus sanguinis SK1]
          Length = 647

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + S+ +         
Sbjct: 15  ESGVSTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPLIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   +++++A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVSKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|256788869|ref|ZP_05527300.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 653

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++   ++             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 45  EVKDGETVEAVEISSEDGLDILRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDV 103

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYNDR 675
            KP    +LK+IE  + +I  +      R++  E A    A          L G+  +D 
Sbjct: 104 EKPFHPDDLKAIEKKMQEIQKRGQRFSRRVVTDEAAREELADEPYKLELIGLKGSASSDD 163

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ +T  I    ++      A   R
Sbjct: 164 GADVEVGAGELTIYDNLDAKTGELCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 218


>gi|21220031|ref|NP_625810.1| threonyl-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289772757|ref|ZP_06532135.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
 gi|22654145|sp|Q9L278|SYT_STRCO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|6822227|emb|CAB70933.1| threonine-tRNA synthetase [Streptomyces coelicolor A3(2)]
 gi|289702956|gb|EFD70385.1| threonyl-tRNA synthetase [Streptomyces lividans TK24]
          Length = 658

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            ++   ++             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 50  EVKDGETVEAVEISSEDGLDILRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYNDR 675
            KP    +LK+IE  + +I  +      R++  E A    A          L G+  +D 
Sbjct: 109 EKPFHPDDLKAIEKKMQEIQKRGQRFSRRVVTDEAAREELADEPYKLELIGLKGSASSDD 168

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ +T  I    ++      A   R
Sbjct: 169 GADVEVGAGELTIYDNLDAKTGELCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 223


>gi|261212136|ref|ZP_05926422.1| predicted metal-dependent hydrolase [Vibrio sp. RC341]
 gi|260838744|gb|EEX65395.1| predicted metal-dependent hydrolase [Vibrio sp. RC341]
          Length = 297

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 85/245 (34%), Gaps = 46/245 (18%)

Query: 511 VEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQIT----DVQKKAEG----------- 552
           V+VV D+TPF+  +        D G  I  G    +T     V ++A G           
Sbjct: 31  VDVVTDKTPFHPVSHIWPDHPADRGVLIWQGNEYPVTACLVGVIEQASGHLYVGNDIPVK 90

Query: 553 --------IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
                   + VH        L+   S+ L +D Q +  LS  HSA HL + AL+ +L  +
Sbjct: 91  RDESGWLFVVVHRLNSMPPALKVGESVKLVVDAQYQASLSRGHSAGHLAYLALNKVLAQN 150

Query: 605 VSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +  +        FD            P  S +L  +   +      +  V+  +   E
Sbjct: 151 YWRKDADRKDPHGYFDFNSYAQISSFVTPDCSTDLYRLGKTLRKRGLNSDDVLKDLDLIE 210

Query: 658 DAIASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           ++        L           GT   D    V   +E  G  +   CGGTHV+      
Sbjct: 211 ESTNQQLMQWLALSSSIQIECEGTTLTDSRYWVCDLHE--GAPARIPCGGTHVNGLEAFR 268

Query: 707 LLYIV 711
           L+ +V
Sbjct: 269 LIKVV 273


>gi|197334325|ref|YP_002155391.1| hypothetical protein VFMJ11_0648 [Vibrio fischeri MJ11]
 gi|197315815|gb|ACH65262.1| conserved hypothetical protein [Vibrio fischeri MJ11]
          Length = 291

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 98/269 (36%), Gaps = 67/269 (24%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITDVQ--------- 547
           ++++E   G+   V+  +TPF+  +        D G  + +     +   Q         
Sbjct: 23  QLIKETEQGK--WVITKETPFHPVSHIWPDHPEDKGVILINNEEYSVLACQTGAIELATG 80

Query: 548 -------------KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                        ++     V H I     +  E ++ L +D + ++ LS  HSA H+ +
Sbjct: 81  ELYIGKDIPIKRGEEGWVFVVSHLISTNADISVENTVTLRVDEEYQKALSRGHSAGHIAY 140

Query: 595 HALSTILGSHVSQNG-------------------SCITPDGLR---------FDVTHSKP 626
            AL+ +L ++  + G                   S ++ D                 +  
Sbjct: 141 LALNKVLHANYWRKGADRKDELGHYNFNSYAQETSFVSEDHCEDVYRLGKTLRKRGLNSA 200

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
               +LK+IE+ VN  I + L + +++      +     AL  ++Y        V++   
Sbjct: 201 EMMVDLKAIEEAVNQQIIEWLALESQVT-----MQCDGKALTDSRY------WIVDFGID 249

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G+ +   CGGTHVSS  E   + +  E  
Sbjct: 250 GI-AKLPCGGTHVSSFKEYATIMVKLEEK 277


>gi|256391426|ref|YP_003112990.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
 gi|256357652|gb|ACU71149.1| threonyl-tRNA synthetase [Catenulispora acidiphila DSM 44928]
          Length = 666

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 60/180 (33%), Gaps = 28/180 (15%)

Query: 566 RTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +    +  +  D ++ R +   HS  H+L  A+           G  I  +G  +D    
Sbjct: 56  KAGDVVEPVAADSEDGRAIIR-HSTAHVLAQAVQQAFPDAKLGIGPPI-RNGFYYDFDVE 113

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN------ 673
           KP T  +LK++E  +  II Q      R +  EDA            L+G K        
Sbjct: 114 KPFTPEDLKALESRMQTIIKQGQLFSRRAVTDEDAREELAAEPYKLELIGLKGKASSDDA 173

Query: 674 DRVRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                V V   +  ++              LC G HV ST  I    ++      A   R
Sbjct: 174 GEGVDVEVGAGELTIYDNLDAKSGDLCWKDLCRGPHVPSTRFIPAFKLM---RSAAAYWR 230


>gi|239932385|ref|ZP_04689338.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 653

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+   ++             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 45  ELQDGETVEGVEISSEDGLNILRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDV 103

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYNDR 675
            KP    +LK+IE  + +I  +      R++  ++A    A          L G   +D 
Sbjct: 104 DKPFHPDDLKAIEKKMQEIQKRGQRFSRRVVTDDEAREELADEPYKLELIGLKGAASHDD 163

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ +T  I    ++          R
Sbjct: 164 GADVEVGAGELTIYDNLDAKTGELCWKDLCRGPHLPTTRNIPAFKLM---RNAGAYWR 218


>gi|291440752|ref|ZP_06580142.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
 gi|291343647|gb|EFE70603.1| threonyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672]
          Length = 658

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 23/178 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+   ++             + HS  H++  A+  +        G  +  DG  +D   
Sbjct: 50  ELQDGETVEGVEISSEDGLNILRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYNDR 675
            KP    +LK+IE  + +I  +      R++  ++A    A          L G   +D 
Sbjct: 109 DKPFHPDDLKAIEKKMQEIQKRGQRFSRRVVTDDEAREELADEPYKLELIGLKGAASHDD 168

Query: 676 VRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              V V   +  ++              LC G H+ +T  I    ++          R
Sbjct: 169 GADVEVGAGELTIYDNLDAKTGELCWKDLCRGPHLPTTRNIPAFKLM---RNAGAYWR 223


>gi|159028099|emb|CAO87176.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 618

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 85/239 (35%), Gaps = 40/239 (16%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            I+  +++ L I H+  H+L  A+ T+        G   T  G  +D     P T  +L+
Sbjct: 14  VIEDDSQKLLKIRHTCAHILAMAVQTLFPETKVAIGPW-TETGFYYDFDRQTPFTPEDLE 72

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK--------YNDRVRVVSVEYED 685
            I   +  II +NLP++  ++ R +  A         K         ++ +    +   D
Sbjct: 73  KIAAEMGRIIGKNLPIIREVLERSEITAEIERLNQPYKKLILERIPPDETITRYFIGSPD 132

Query: 686 GG-----------------VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
            G                      LC G H++STGEI     V ES           + G
Sbjct: 133 AGRSDREPSLIDGAVSPPEEFWWDLCAGPHLNSTGEINPNAFVLES-----------VAG 181

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKLQLNVEDL 786
             A      +  +L+ +      +   +   +++  E + R  + +  K KL    ED 
Sbjct: 182 --AYWQGDEKQPQLQRIYGTAWQTPAELQNYLQQKEEAQRRDHRKLGQKLKLFSIQEDA 238


>gi|148284343|ref|YP_001248433.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166225471|sp|A5CD12|SYT_ORITB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146739782|emb|CAM79649.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 648

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 70/222 (31%), Gaps = 21/222 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H   H+L  A+  +        G  I  DG  +D    KP T+ +L+ IE  + DIIA
Sbjct: 71  LRHDTAHILAQAVKKLFPDTQVVIGPVI-KDGFYYDFARDKPFTNKDLEVIEQEMQDIIA 129

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +N  +   +  R  AI            K  + +            +   LC G H  ST
Sbjct: 130 KNDLIQREVWLRAKAIEFFKQQKEFYKVKLIEEIPESEEISIYRQGNFVDLCRGPHSPST 189

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL---KVSQGNVVGR 759
           G          + +     R               ++E L+ +       K    + + R
Sbjct: 190 GYCT--KYFKLTKVSGAYWR------------GNSKNEVLQRIYGTAWEKKSDLDSYLHR 235

Query: 760 VEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           + E  +  +RKL         Q   + +             I
Sbjct: 236 LSEAQKRDHRKLGRELELFHFQDEAQGMPFWHDKGWTIFKII 277


>gi|92111812|gb|ABE73650.1| threonyl-tRNA synthetase [Streptococcus salivarius]
          Length = 165

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I+ 
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKIVK 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHV 699
           +N P +   + +++A            Y   +     E E G           LC G HV
Sbjct: 64  ENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHV 119

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            STG I + +++   ++     R
Sbjct: 120 PSTGRIQVFHLL---NVAGAYWR 139


>gi|288924947|ref|ZP_06418883.1| threonine--tRNA ligase [Prevotella buccae D17]
 gi|288338137|gb|EFC76487.1| threonine--tRNA ligase [Prevotella buccae D17]
          Length = 673

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 10/149 (6%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I        +  S    S  +   IE  + +
Sbjct: 69  HTFWHTSAHLLAEALKELYPGIQFGFGPAIENGFFYDVMPASGQTISENDFPKIEAKMLE 128

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           +  ++ PVV R + + +A+    A   G  Y      + +E      ++      LC G 
Sbjct: 129 LAKKDEPVVRREVPKAEALEEFKAD--GQTYKCEHIDLDLEDGSISTYTQGNFTDLCRGP 186

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           H+ STG I  L I S   +     R +A 
Sbjct: 187 HLMSTGAIKALKITS---VAGAFWRGDAK 212


>gi|185179115|ref|ZP_02964840.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188024051|ref|ZP_02996803.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188518364|ref|ZP_03003871.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225551314|ref|ZP_03772260.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209012|gb|EDU06055.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str.
           ATCC 27817]
 gi|188019085|gb|EDU57125.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str.
           ATCC 27819]
 gi|188998237|gb|EDU67334.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str.
           ATCC 33695]
 gi|225379129|gb|EEH01494.1| threonine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 580

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIED 637
               +NHSA H+L  AL+    +     G  I  +G  +D   + P   IT  +L  IE 
Sbjct: 4   FDPKLNHSAAHVLAMALTKFYPNLSLAIGPAID-EGFYYDFNLNDPNTSITPIDLLKIEK 62

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +  I AQ L      ++ E A              +  +   +     G     LC G 
Sbjct: 63  EMKKIAAQALTFDYEQVSYEQAKDLFKNNKYKLDIIEENKNKPLSIYHSGKWFD-LCKGP 121

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           HV +T EI  + ++   +I     R +A
Sbjct: 122 HVENTKEIKAIKLL---NIAGSYWRGDA 146


>gi|171920625|ref|ZP_02695822.2| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|188524282|ref|ZP_03004325.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195867906|ref|ZP_03079904.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198273446|ref|ZP_03205982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209554092|ref|YP_002284982.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|238065120|sp|B5ZC42|SYT_UREU1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171903344|gb|EDT49633.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str.
           ATCC 33698]
 gi|195660016|gb|EDX53396.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str.
           ATCC 33696]
 gi|195660383|gb|EDX53642.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str.
           ATCC 33175]
 gi|198249966|gb|EDY74746.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|209541593|gb|ACI59822.1| threonyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 580

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIED 637
               +NHSA H+L  AL+    +     G  I  +G  +D   + P   IT  +L  IE 
Sbjct: 4   FDPKLNHSAAHVLAMALTKFYPNLSLAIGPAID-EGFYYDFNLNDPNTSITPIDLLKIEK 62

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +  I AQ L      ++ E A              +  +   +     G     LC G 
Sbjct: 63  EMKKIAAQALTFDYEQVSYEQAKDLFKNNKYKLDIIEENKNKPLSIYHSGKWFD-LCKGP 121

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEA 725
           HV +T EI  + ++   +I     R +A
Sbjct: 122 HVENTKEIKAIKLL---NIAGSYWRGDA 146


>gi|309789973|ref|ZP_07684549.1| threonyl-tRNA synthetase [Oscillochloris trichoides DG6]
 gi|308227993|gb|EFO81645.1| threonyl-tRNA synthetase [Oscillochloris trichoides DG6]
          Length = 594

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 29/207 (14%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  H++  A+  I        G  I   G  +D    + +T  +L  IE  +  II
Sbjct: 12  RLRHSLAHVMAEAVLQIFPEGKVAIGPPI-EHGFYYDFDLPRALTPDDLGEIERRMQAII 70

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----------TKYNDRVRVVSVEYEDGGVHSSA 692
             N P + R ++  +A    A                 +  +     +V           
Sbjct: 71  GGNFPFIYREVSAAEARQIFANQPYKLELIDGLSKGLDENGETHHGDTVISTYTHDTFED 130

Query: 693 LCGGTHVSSTGEI--MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           LC G H+  TG+I      ++S   I     R               + ++L+ +     
Sbjct: 131 LCRGPHLEHTGQIPNDGFKLMS---IAGAYWR------------GDEKQKQLQRIYGTAW 175

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKR 777
            ++  +   +  + E  R+      K 
Sbjct: 176 NNKTELEQHLHNLEEAKRRDHRKLGKE 202


>gi|224027144|ref|ZP_03645510.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
 gi|224020380|gb|EEF78378.1| hypothetical protein BACCOPRO_03905 [Bacteroides coprophilus DSM
           18228]
          Length = 326

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 34  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKEGDLPAIEKKMAE 92

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   +V + + ++DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 93  LAAKKETLVRQSIAKDDALKMFGER--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 149

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ ST  I  + ++S +         R  + RI  IT
Sbjct: 150 HLMSTAPIKAIKLLSVAGAYWRGQEDRKQMTRIYGIT 186


>gi|39725443|emb|CAE45679.1| Threonyl-tRNA synthetase [Streptomyces parvulus]
          Length = 675

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 28/159 (17%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +        G  I  +G  +D    +P    +L+ +E  + +II 
Sbjct: 77  LRHSTAHVLAQAVQQLWPEARLGIGPPI-ENGFYYDFDVERPFQPEDLERVEQRMKEIIK 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN----------DRVRVVSVEYEDGGVHS---- 690
                  R     +A     A L    Y           D    + V   D  ++     
Sbjct: 136 SGQRFCRREFPDREAAR---AELAKEPYKLELVDLKGDVDAAEAMEVGGSDLTIYDNLDA 192

Query: 691 -------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  S LC G H+ ST  I    ++      A   R
Sbjct: 193 RTGDVCWSDLCRGPHLPSTRLIPAFKLL---RNAAAYWR 228


>gi|94985607|ref|YP_604971.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
 gi|123079875|sp|Q1IY82|SYT_DEIGD RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94555888|gb|ABF45802.1| threonyl-tRNA synthetase [Deinococcus geothermalis DSM 11300]
          Length = 649

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 31/208 (14%)

Query: 585 INHSATHLLHHA---LSTILGSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDN 638
             HS  H+L  A        G         + P   +G   D    +P+   +L  IE  
Sbjct: 71  FRHSLGHVLSQAVGEFYQRKGYPREAVKRGVGPAIENGFYQDFDLPEPLKEEDLPEIEAI 130

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALC 694
           + +II + L +V + + +  A+   +       Y   +     E E    ++      LC
Sbjct: 131 MREIIGRGLDIVRQDVGKAAALKHFSY----DPYKVELIQELPENEPVTFYAQGDYVDLC 186

Query: 695 GGTHVSSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753
            G H  +TG++     ++S S                A      ++  L+ +      +Q
Sbjct: 187 RGPHFPNTGKLPGAFKLMSTSG---------------AYWRGNEKNPILQRVYGVAFATQ 231

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
             +   +E + EE R+       R+L+L
Sbjct: 232 KELDEYLERL-EEARRRDHRKLGRELEL 258


>gi|257055522|ref|YP_003133354.1| threonyl-tRNA synthetase [Saccharomonospora viridis DSM 43017]
 gi|256585394|gb|ACU96527.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase
           [Saccharomonospora viridis DSM 43017]
          Length = 692

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 27/161 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D    +P T  +L+++E  +  II 
Sbjct: 77  IRHSAAHVLAQAVQQQFPEAKLGIGPPI-KDGFYYDFAVDRPFTPEDLQALEKRMKQIIK 135

Query: 645 QNLPVVTRIM-NREDAIASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHS-- 690
                  R++ + E A    A               G    D   V+ V   +  ++   
Sbjct: 136 GAQQFSRRVVESVEAAKEELADEPFKLELVDLKSEQGADAVDTSEVMEVGAGELTIYDNL 195

Query: 691 ---------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                    S LC G HV +T  I    +     + A   R
Sbjct: 196 DPRTKERVWSDLCRGPHVPTTKYIPAFKLT---RVAAAYWR 233


>gi|92111786|gb|ABE73637.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
 gi|92111810|gb|ABE73649.1| threonyl-tRNA synthetase [Streptococcus salivarius]
 gi|92111822|gb|ABE73655.1| threonyl-tRNA synthetase [Streptococcus vestibularis]
          Length = 165

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I+ 
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKIVK 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHV 699
           +N P +   + +++A            Y   +     E E G           LC G HV
Sbjct: 64  ENFPSIREEVTKDEAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHV 119

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            STG I + +++   ++     R
Sbjct: 120 PSTGRIQVFHLL---NVAGAYWR 139


>gi|169351009|ref|ZP_02867947.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
 gi|169292071|gb|EDS74204.1| hypothetical protein CLOSPI_01786 [Clostridium spiroforme DSM 1552]
          Length = 606

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS-AELKSIEDNVNDII 643
           +NHS  H++  A+  +        G  ++ +G  +DV     +    ++  IE  +  I 
Sbjct: 42  LNHSCAHVMAQAIKHLYPQAKFWVGPVVS-EGFYYDVDLGNAVIKDEDIPKIEKEMKKIC 100

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCG 695
                +V + +++E+A+            +D  ++  +   + G + S         LC 
Sbjct: 101 KDGKRIVRQEISKEEALEMFK--------DDEYKIDLINNFENGTNISCYKQGDFVDLCR 152

Query: 696 GTHVSSTGEIMLLYIVSESS 715
           G HV +        +   S 
Sbjct: 153 GPHVETVKACKNFKLTKHSG 172


>gi|260903858|ref|ZP_05912180.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Brevibacterium
           linens BL2]
          Length = 668

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 85/260 (32%), Gaps = 34/260 (13%)

Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597
           G  +  TD    A  +      + R +   +    +TID      +   HSA H+   A+
Sbjct: 20  GTEIFSTDRTVVAMWLDGQPVDLSRELAAGDQIAPITIDSPAGLDILR-HSAAHVTAQAV 78

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +        G  IT DG  FD   ++P T  +LK+I+     I+         ++  +
Sbjct: 79  QDLFPDAKLGIGPYIT-DGYYFDFDVAEPFTPEDLKAIQKKAAQIVKAGQTFNRVVVTED 137

Query: 658 DAIASGA-----AALLGTKYNDRVRVVSVE------------YEDGGVHSSALCGGTHVS 700
           +A A  A       L+  K        SVE               G +    LC G H+ 
Sbjct: 138 EAKARMANEPYKLELINDKGAGSDDSASVEVGAGELTVYENLDRKGEIVWQDLCRGPHLP 197

Query: 701 STGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
           ST  I     +       A   R     G +A + L        +    LK  Q  +   
Sbjct: 198 STKLIGNGFAVT---RSSAAYWR-----GDQANASLQRVYGTAWASKEDLKAHQDRLAE- 248

Query: 760 VEEIWEEYRKLQLIHAKRKL 779
                 E R  + + A+  L
Sbjct: 249 -----AERRDHRKLGAELDL 263


>gi|27363890|ref|NP_759418.1| putative metal-dependent hydrolase [Vibrio vulnificus CMCP6]
 gi|27360007|gb|AAO08945.1| Predicted metal-dependent hydrolase [Vibrio vulnificus CMCP6]
          Length = 294

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 80/257 (31%), Gaps = 44/257 (17%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIR-------------- 540
           + +IV  + +   + VV   TPF+  +        D G  I DG                
Sbjct: 18  ESDIVLTSANEHSLYVVTQHTPFHPVSHIWPDHPADRGSLIADGKEWPIIGCWVGAVECS 77

Query: 541 ---------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                    + +    +    + VH    ERG L     + L++D + ++ LS  HSA H
Sbjct: 78  TGRLFVDQAIPVKRDTEGWSFVVVHEIEAERGQLSVGSKVRLSVDKEYQQSLSRGHSAGH 137

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIA 644
           L + AL+ +L     +  +        +D            P    +   +   +     
Sbjct: 138 LAYLALNKVLAQGYWRKDADRKDPHGYYDFNSYAQESSVVTPECCLDTYRLGKTLRKRGL 197

Query: 645 QNLPVVTRIMNRED----------AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
            +  VV  I   E           A  S        +Y    R    +  +        C
Sbjct: 198 NSADVVENIQEIESEVNVQLEHWLARGSEIFMNCHGEYLTDSRYWQCDLGEASTAII-PC 256

Query: 695 GGTHVSSTGEIMLLYIV 711
           GGTH +   E+  + + 
Sbjct: 257 GGTHAAGLFEMKEIAVT 273


>gi|330443967|ref|YP_004376953.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
 gi|328807077|gb|AEB41250.1| threonyl-tRNA synthetase [Chlamydophila pecorum E58]
          Length = 635

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 27/209 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+   ++       +  +    H++ HLL  A+  +        G  I   G  +D   
Sbjct: 47  PLQEGNTVTFITSEDSHGREIFLHTSAHLLAQAVLRLWPDAQPTIGPVIDQ-GFYYDFA- 104

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NREDAIASGAAALLGTKYNDRVRVVSVE 682
           +  I+  +  +IE+ V  I+ + LP+   ++  +++A+   +           +     E
Sbjct: 105 NLSISEKDFPAIEEMVAKIVEEELPIARSVLKTKDEALQKFSNNPF----KAELIRELPE 160

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR-------------IEA 725
            E+   ++      LC G H+ ST  +    ++  S   A   R             I  
Sbjct: 161 NEEISAYAQGEFMDLCRGPHLPSTAPVKAFKVLRTS---AAYWRGDPSRESLVRVYGISF 217

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            T Q  + HL   +E  K     L V   
Sbjct: 218 PTMQELKEHLHQLEEAKKRDHRVLGVKLD 246


>gi|159489562|ref|XP_001702766.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280788|gb|EDP06545.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 579

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 24/241 (9%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVN 640
           L I HS  H++  A+  +        G      G  +D       P+T  +LK I+  + 
Sbjct: 13  LRIRHSCAHIMAMAVQRLFKGVQVTVGPWTDR-GFFYDFAWPADSPLTEKDLKKIKKEMA 71

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            I+  NLP V   ++  +A A   A     K      ++             LC G HV 
Sbjct: 72  KIMKANLPFVKEEVSPAEAEARIRAQGEPYKLEILQSILQPAGPKPVAPWWDLCAGPHVE 131

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG+I     V   ++     R     G  A + L                +   +    
Sbjct: 132 RTGDINPDA-VELENVTGAYWR-----GDEANAMLTRVYGTAWE-------TPEQLAA-- 176

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
                 +++L+   AKR  +    +L+   I + +    +        ++ ++++  K++
Sbjct: 177 ------FKQLKEEAAKRDHRKLGAELNLFSIQESSGGGLVYWHPPGAMVRHLIESFWKEL 230

Query: 821 Q 821
            
Sbjct: 231 H 231


>gi|227495497|ref|ZP_03925813.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
 gi|226831044|gb|EEH63427.1| threonine--tRNA ligase [Actinomyces coleocanis DSM 15436]
          Length = 665

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 77/203 (37%), Gaps = 34/203 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS TH++  A+  +        G  +T DG  +D  + +P T  +LK IE  +  I+ 
Sbjct: 67  LRHSCTHVMAQAVQQLNPQVDLGIGPPVT-DGFYYDFGNVEPFTPEDLKEIEKVMKRIVK 125

Query: 645 QNLPVVTRIMNREDAIASGA-----AALLGTKYND--RVRVVSVEYEDGGVHS------- 690
           +    V R++  E+A A  A       L+G K +D      V V   +  ++        
Sbjct: 126 EGQSFVRRVVTEEEARAELADQPHKLHLIGAKGSDLGEGAAVEVGGGELTIYDNVRRNGE 185

Query: 691 ---SALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
              S LC G H+ +T  I     ++  S                A      ++ +L+ + 
Sbjct: 186 VAWSDLCRGPHIPNTKLIGNGFALMKTS---------------AAYWLGNQKNAQLQRIY 230

Query: 747 SFLKVSQGNVVGRVEEIWEEYRK 769
                ++  +   +  + E  ++
Sbjct: 231 GTAWPTKEELAAYLHRLSEAEKR 253


>gi|224370824|ref|YP_002604988.1| threonyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2]
 gi|259516390|sp|C0QAP1|SYT_DESAH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|223693541|gb|ACN16824.1| ThrS2 [Desulfobacterium autotrophicum HRM2]
          Length = 636

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  +        G  +  DG  +D+  + PI+ A+   IE  +  I+ 
Sbjct: 71  LRHSAAHVMAEAVQNLHADAKLTIGPVV-EDGFYYDIDMA-PISDADFPKIEAEMAKIVK 128

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
              P     + +++A+          +  + +   ++     G     LC G H+  TG 
Sbjct: 129 AKKPFQRSEITKQEALELFKDNPYKVELINGLDDQTISIYQQGDFVD-LCRGPHIPHTGM 187

Query: 705 IMLLYIVSESS 715
           I  L ++  S 
Sbjct: 188 IKGLKLMKTSG 198


>gi|320157269|ref|YP_004189648.1| putative metal-dependent hydrolase [Vibrio vulnificus MO6-24/O]
 gi|319932581|gb|ADV87445.1| predicted metal-dependent hydrolase [Vibrio vulnificus MO6-24/O]
          Length = 294

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 80/257 (31%), Gaps = 44/257 (17%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIR-------------- 540
           + +IV  + +   + VV   TPF+  +        D G  I DG                
Sbjct: 18  ESDIVLTSANEHSLYVVTQHTPFHPVSHIWPDHPADRGSLIADGKEWPIIGCWVGAVECS 77

Query: 541 ---------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                    + +    +    + VH    ERG L     + L++D + ++ LS  HSA H
Sbjct: 78  TGRLFVDQAIPVKRDTEGWSFVVVHEIEAERGQLSVGSKVRLSVDKEYQQSLSRGHSAGH 137

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIA 644
           L + AL+ +L     +  +        +D            P    +   +   +     
Sbjct: 138 LAYLALNKVLAQGYWRKDADRKDPHGYYDFNSYAQESSVVTPECCLDTYRLGKTLRKRGL 197

Query: 645 QNLPVVTRIMNRED----------AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
            +  VV  I   E           A  S        +Y    R    +  +        C
Sbjct: 198 NSADVVENIQEIESEVNVQLEHWLARGSEIFMNCHGEYLTDSRYWQCDLGEASTAII-PC 256

Query: 695 GGTHVSSTGEIMLLYIV 711
           GGTH +   E+  + + 
Sbjct: 257 GGTHAAGLFEMKEIAVT 273


>gi|307294661|ref|ZP_07574503.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
 gi|306879135|gb|EFN10353.1| threonyl-tRNA synthetase [Sphingobium chlorophenolicum L-1]
          Length = 660

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 66/175 (37%), Gaps = 19/175 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIA 644
            H   H+L  A+  +        G   T DG  +D     +P T  +L  IE  + +IIA
Sbjct: 73  RHDFAHILAEAVQALFPGTQITFGPS-TDDGFYYDFAPKDRPFTEEDLPVIEAKMREIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-----ALCGGTHV 699
            + P+   +  RED IA   A   G  +         E E+  V+ S      +C G H+
Sbjct: 132 ADKPLRREVWRREDLIARWQA--EGETFKAEWATELPEGEELTVYWSGNEWLDMCRGPHL 189

Query: 700 SSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           +STG  +     +   S          A + RI   TG   R  L     +L+  
Sbjct: 190 ASTGKLDPAAFKLTRVSGAYWRGDQKNAMLSRIYG-TGWLNRKQLDAHLTRLEEA 243


>gi|37678955|ref|NP_933564.1| metal-dependent hydrolase [Vibrio vulnificus YJ016]
 gi|37197697|dbj|BAC93535.1| predicted metal-dependent hydrolase [Vibrio vulnificus YJ016]
          Length = 294

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 42/256 (16%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIR-------------- 540
           + +IV  +V+   + VV   TPF+  +        D G  I DG                
Sbjct: 18  ESDIVLTSVNEHSLYVVTQHTPFHPVSHIWPDHPADRGSLIADGKEWPIIGCWVGAVECS 77

Query: 541 ---------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                    + +    +    + VH    ERG L     + L++D + ++ LS  HSA H
Sbjct: 78  TGRLFVDQAIPVKRDTEGWSFVVVHEIEAERGQLSVGCKVRLSVDKEYQQSLSRGHSAGH 137

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIA 644
           L + AL+ +L     +  +        +D            P    +   +   +     
Sbjct: 138 LAYLALNKVLAQGYWRKDADRKDPHGYYDFNSYAQESSVVTPECCLDTYRLGKTLRKRGL 197

Query: 645 QNLPVVTRIMNREDAIA---SGAAALLGTKY----NDRVRVVSVEYEDGGVHSSA--LCG 695
            +  VV  I   E  +        A     Y     + +        D G  S+A   CG
Sbjct: 198 NSADVVENIQEIESEVNVQLEHWLARGSEIYMNCHGEYLTDSRYWQCDLGEASTAIIPCG 257

Query: 696 GTHVSSTGEIMLLYIV 711
           GTH +   E+  + + 
Sbjct: 258 GTHAAGLFEMKEIAVT 273


>gi|220961890|gb|ACL93382.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
 gi|220961894|gb|ACL93384.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
 gi|220961896|gb|ACL93385.1| threonyl-tRNA synthetase [Streptococcus thermophilus]
          Length = 165

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 20/147 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I+ 
Sbjct: 4   LRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKIVK 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGV------HSSALCG 695
           +N P +   + +++A             ND  ++  +E    +DGG+          LC 
Sbjct: 64  ENFPSIREEVTKDEAREIFK--------NDPYKLELIEEHSEDDGGLTIYRQGEYVDLCR 115

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G HV STG I + +++   ++     R
Sbjct: 116 GPHVPSTGRIQIFHLL---NVAGAYWR 139


>gi|15829217|ref|NP_326577.1| threonyl-tRNA synthetase [Mycoplasma pulmonis UAB CTIP]
 gi|22654134|sp|Q98PH6|SYT_MYCPU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|14090161|emb|CAC13919.1| THREONYL-TRNA SYNTHETASE 1 (THREONINE--TRNA LIGASE) (THRRS)
           [Mycoplasma pulmonis]
          Length = 589

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            I+Y  +   ++NH+ +HLL  A+  +  +     G  I  +G  +D     P++  EL 
Sbjct: 8   EINYDFKVDSNLNHTTSHLLAAAIVQLYPNVKLGFGPAI-EEGFYYDFEFENPLSKLELL 66

Query: 634 SIEDNVNDIIAQNLP-VVTRIMNREDAIASGAAALLGT--KYNDRVRVVSVEYEDGGVHS 690
            IE  +  + + NL  V     N +         L     +    +   S+   +G    
Sbjct: 67  KIEKLMKKLASMNLKMVKVDGSNYDFTNKPYKKELYDELKQKGQEITFYSLVDTNGKEIF 126

Query: 691 SALCGGTHVSSTGEIMLLYIVSESS 715
           + LC G HV ST +I    ++S + 
Sbjct: 127 TDLCAGGHVESTSKINNFKLLSLAG 151


>gi|254819890|ref|ZP_05224891.1| threonyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950]
          Length = 691

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HSA H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 72  VAANTDDGR---SVIRHSAAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 127

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   V+ V  +
Sbjct: 128 DLAALEKRMRQIVKEGQLFERRVYESKDQARAELAGEPYKLELVDDKSGDPS-VMEVGGD 186

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 187 ELTAYDNLNPRTRERVWGDLCRGPHIPTTRHIPAFKLTRSSA 228


>gi|296187094|ref|ZP_06855492.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
 gi|296048288|gb|EFG87724.1| threonyl-tRNA synthetase [Clostridium carboxidivorans P7]
          Length = 560

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +   +  +        G  I   G  +D       T   L+ IE  +N II +NL +   
Sbjct: 1   MLKLVKKVYPEVKLAIGPAIDT-GFYYDFDAEFSFTPEMLEKIEVEMNKIIKENLKLERF 59

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLL 708
            + RE+AI           Y   +     E      +       LC G HV STG++  +
Sbjct: 60  ELPREEAIK--LMQEKKECYKVELIKDLPEDAVISFYKQGDFVDLCAGPHVPSTGKVKAV 117

Query: 709 YIVS 712
            ++S
Sbjct: 118 KLLS 121


>gi|255327209|ref|ZP_05368284.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
 gi|255295827|gb|EET75169.1| threonine--tRNA ligase [Rothia mucilaginosa ATCC 25296]
          Length = 677

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 32/193 (16%)

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D  ++ +  V     G+ V         L    S+     ++      + HSA H++
Sbjct: 28  LFADDPKIVVARV----NGVLVDL----SHELSAGDSVEPVFIHEPDGLNVLRHSAAHVM 79

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+           G  IT DG  FD   ++P T  +LK IE ++  II        R+
Sbjct: 80  AQAVQEYRKDAKLGIGPYIT-DGFYFDFDVAEPFTPEDLKKIEKSMIKIIKSGQLFRRRV 138

Query: 654 MNREDAIASGAAALLGTKY-----------------------NDRVRVVSVEYEDGGVHS 690
           +  ++A+A  A      +                         +     +V  + G    
Sbjct: 139 VTHDEAVAEMANEPYKLELLSLTQGPGSGADAAEGASVEVGEGEITIYDNVHPKTGETVW 198

Query: 691 SALCGGTHVSSTG 703
             LC G H+ +T 
Sbjct: 199 KDLCRGPHLPNTK 211


>gi|261328034|emb|CBH11011.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 799

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 46/223 (20%)

Query: 567 TEMSLVLTIDYQN-RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
              + +  +D+ +   +    HS++H+L +AL  +  + +S  G  +   G  ++   ++
Sbjct: 102 EGDATLELLDWDDADARHVFWHSSSHVLGYALERVFQTRLSV-GPALEEGGFFYEGETNR 160

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P+T A+  +IE  + +++   +P     + +EDA+         +K    +     E   
Sbjct: 161 PVTEADYTTIETAMQELVKMKVPFQRLTVKKEDALRLFQYTEFKSKI---LASKVPENGT 217

Query: 686 GGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             V+        C G H+  TG +    +   SS                 S+  G+ E 
Sbjct: 218 CTVYRCGNLIDPCRGPHLPDTGRVKSFSLTKNSS-----------------SYFEGKAE- 259

Query: 742 LKSLASFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKR 777
                         V+ RV       + +  E++KLQ   A+R
Sbjct: 260 ------------NAVLQRVYGISFPKQTMLTEWKKLQEEAARR 290


>gi|225021291|ref|ZP_03710483.1| hypothetical protein CORMATOL_01310 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946024|gb|EEG27233.1| hypothetical protein CORMATOL_01310 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 700

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 63/192 (32%), Gaps = 36/192 (18%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS TH+L  A+           G  I  +G  +D   ++P T  +L+ IE  +  II 
Sbjct: 90  IRHSCTHVLAQAVQQEFPGTKLGIGPAID-NGFYYDFDVAEPFTPEDLQRIEKRMKKIIK 148

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVSV 681
           Q      R+   + A A  A AL    Y                        +     ++
Sbjct: 149 QGQKFERRVYA-DQAEA--AEALKNEPYKLELIADKGSVDPQSDEATEVGAGELTGYYNL 205

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRAR 732
                 V    LC G HV +T  I    +   S+         AG++RI         A 
Sbjct: 206 NPRTKAVEWYDLCRGPHVPTTKYIPAFALTRSSAAYWRGDQANAGLQRIYGTAWESPDAL 265

Query: 733 SHLMGQDEKLKS 744
           +    +  + + 
Sbjct: 266 AEYQHKMAEAEK 277


>gi|312195608|ref|YP_004015669.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
 gi|311226944|gb|ADP79799.1| threonyl-tRNA synthetase [Frankia sp. EuI1c]
          Length = 662

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 71/224 (31%), Gaps = 57/224 (25%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           A  GGQ  D    + DG  ++                              +T+D  + R
Sbjct: 38  ARVGGQQRDLAHVLADGDVVE-----------------------------PITVDSPDGR 68

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            +   HS  H++  A+  +        G  I  +G  +D    KP ++ +LK+IE    +
Sbjct: 69  AIVR-HSTAHVVAQAVQDLFPKARLGIGPPIQ-NGFYYDFDVEKPFSAEDLKAIEKRARE 126

Query: 642 IIAQNLPVVTRIMNREDAIAS-----GAAALLGTKY-------NDRVRVVSVEYEDGGVH 689
           I+        R +  + A A          L+G K        ND    V V   +  ++
Sbjct: 127 IVKAGQRFSRRAVTDDAARAELADEPYKLELIGLKSSAGEVDANDADAAVEVGAGELTIY 186

Query: 690 S-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                         LC G HV +T  I    I       A   R
Sbjct: 187 DNLDAKTGELCWKDLCRGPHVPTTRHIPAFAI---QRSAAAYWR 227


>gi|256376220|ref|YP_003099880.1| threonyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
 gi|255920523|gb|ACU36034.1| threonyl-tRNA synthetase [Actinosynnema mirum DSM 43827]
          Length = 682

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 22/175 (12%)

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
           + ++ +          +  I HS  H+L  A+           G  +  DG  +D    +
Sbjct: 58  QVDVEVEAVAADTEDGRSVIRHSTAHVLAQAVQQQFPEAKLGIGPPV-KDGFYYDFQVDR 116

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYN-DRVRV 678
           P T  +L ++E  +  I+        R++        E A       L+  K   D   V
Sbjct: 117 PFTPEDLAALEKRMKAIVKGAQRFTRRVVESTDAAKAELASEPFKLELVDVKGGVDTAEV 176

Query: 679 VSVEYEDGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           + V   +  ++ +            LC G H+ +T  I    +     + A   R
Sbjct: 177 MEVGGGELTIYDNLDPRSGERVWGDLCRGPHLPTTKHIPAFKLT---RVAAAYWR 228


>gi|294673346|ref|YP_003573962.1| threonine--tRNA ligase [Prevotella ruminicola 23]
 gi|294474289|gb|ADE83678.1| threonine--tRNA ligase [Prevotella ruminicola 23]
          Length = 648

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 77/205 (37%), Gaps = 25/205 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +  +G  +DV     + I  ++   IE  + 
Sbjct: 70  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ENGFFYDVLLKDGESIKESDFPKIEAKMK 128

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +  PVV R + + +A+   A    G  Y        +E      ++      LC G
Sbjct: 129 ELAGKKEPVVRREVPKAEALKQFAEW--GQTYKCEHIEQDLEDGSITTYTQGNFTDLCRG 186

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            H+    +   +  V  +S+     R +A            Q ++L  ++      +  +
Sbjct: 187 PHL---VDTGEIKAVKLTSVAGAFWRGDA---------NREQMQRLYGIS----FPKKKM 230

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL 781
           +    E+ EE +K       ++++L
Sbjct: 231 LDEYLEMLEEAKKRDHRKIGKEMEL 255


>gi|305681479|ref|ZP_07404286.1| threonine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659684|gb|EFM49184.1| threonine--tRNA ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 687

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 63/192 (32%), Gaps = 36/192 (18%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS TH+L  A+           G  I  +G  +D   ++P T  +L+ IE  +  II 
Sbjct: 77  IRHSCTHVLAQAVQQEFPGTKLGIGPAID-NGFYYDFDVAEPFTPEDLQRIEKRMKKIIK 135

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVSV 681
           Q      R+   + A A  A AL    Y                        +     ++
Sbjct: 136 QGQKFERRVYA-DQAEA--AEALKNEPYKLELIADKGSVDPQSDEATEVGAGELTGYYNL 192

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRAR 732
                 V    LC G HV +T  I    +   S+         AG++RI         A 
Sbjct: 193 NPRTKAVEWYDLCRGPHVPTTKYIPAFALTRSSAAYWRGDQANAGLQRIYGTAWESPDAL 252

Query: 733 SHLMGQDEKLKS 744
           +    +  + + 
Sbjct: 253 AEYQHKMAEAEK 264


>gi|269956448|ref|YP_003326237.1| threonyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305129|gb|ACZ30679.1| threonyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894]
          Length = 672

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           +     +     ++      + HSA H+L  A+  +        G  +  DG  +D    
Sbjct: 53  IPVGARVEPVSVHEPDGLNVLRHSAAHVLAQAVQQVNPDAKLGIGPPV-RDGFYYDFDVE 111

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTK-YNDRVRV 678
            P T  +LK+++  ++ II +      R++  E+A A          L+G K   D    
Sbjct: 112 TPFTPEDLKALDKAMSRIIREGQTFRRRVVTEEEARAELGGEPYKLELIGIKGGGDAEES 171

Query: 679 VSVEYEDGGVHS--------------SALCGGTHVSSTGEIM 706
           V V   +  ++                 LC G HV ST  I 
Sbjct: 172 VEVGGAELTIYDNVRGAGRESETVVWKDLCRGPHVPSTRLIG 213


>gi|257064333|ref|YP_003144005.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791986|gb|ACV22656.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Slackia
           heliotrinireducens DSM 20476]
          Length = 586

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 22/191 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
             + HSA H++  A+  +            T +G  +DV    + I+  +L +IE  +  
Sbjct: 20  HVLRHSAAHIMAQAIKRLYP-QADFGYGPATENGFYYDVDLGDEKISEDDLPAIEAEMKK 78

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           I  +NL   T  + RE+AI                D      + +   G +   +C G H
Sbjct: 79  ICKENLKFSTYELPREEAIKHMEERQEQYKVEHIGDLDPDARITFYKQGEY-VDMCVGPH 137

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           +  T  +                 + A++G  A       ++ L  +      S+  +  
Sbjct: 138 ILYTKALKAFK-------------LTAVSG--AYWKGDKDNKMLTRINGIAFASKEELAE 182

Query: 759 RVEEIWEEYRK 769
             E I EE +K
Sbjct: 183 -YERIQEEAKK 192


>gi|72388976|ref|XP_844783.1| threonyl-tRNA synthetase [Trypanosoma brucei TREU927]
 gi|62176044|gb|AAX70165.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei]
 gi|70801317|gb|AAZ11224.1| threonyl-tRNA synthetase, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 799

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 46/223 (20%)

Query: 567 TEMSLVLTIDYQN-RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
              + +  +D+ +   +    HS++H+L +AL  +  + +S  G  +   G  ++   ++
Sbjct: 102 EGDATLELLDWDDADARHVFWHSSSHVLGYALERVFQTRLSV-GPALEEGGFFYEGETNR 160

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P+T A+  +IE  + +++   +P     + +EDA+         +K    +     E   
Sbjct: 161 PVTEADYTTIETAMQELVKMKVPFQRLTVKKEDALRLFQYTEFKSKI---LASKVPENGT 217

Query: 686 GGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
             V+        C G H+  TG +    +   SS                 S+  G+ E 
Sbjct: 218 CTVYRCGNLIDPCRGPHLPDTGRVKSFSLTKNSS-----------------SYFEGKAE- 259

Query: 742 LKSLASFLKVSQGNVVGRV-------EEIWEEYRKLQLIHAKR 777
                         V+ RV       + +  E++KLQ   A+R
Sbjct: 260 ------------NAVLQRVYGISFPKQTMLTEWKKLQEEAARR 290


>gi|297155818|gb|ADI05530.1| threonyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1]
          Length = 659

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 26/180 (14%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + I  Q+   +   HS  H++  A+  +        G  I  DG  +D  
Sbjct: 50  ELAEGDEVEPVEITSQDGLDILR-HSTAHVMAQAVQELFPEAKLGIGPPI-KDGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKY----- 672
              P    +LK IE  + +II +      R +  E A            L+G K      
Sbjct: 108 VETPFHPDDLKRIEKKMQEIIKRGQRFSRRPVTDEAAREELSAEPYKLELIGLKGSAADA 167

Query: 673 ----------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      +     +++ + G +    LC G H+ +T  I    ++      A   R
Sbjct: 168 AEGASAEVGAGELTIYDNLDAKSGELCWRDLCRGPHLPTTRNIPAFKLM---RSAAAYWR 224


>gi|166365900|ref|YP_001658173.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
 gi|166088273|dbj|BAG02981.1| threonyl-tRNA synthetase [Microcystis aeruginosa NIES-843]
          Length = 618

 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 48/221 (21%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
            I+  +++ + I H+  H+L  A+ T+        G   T  G  +D     P T  +L+
Sbjct: 14  VIEEDSQKIVKIRHTCAHILAMAVQTLFPETKVAIGPW-TETGFYYDFDRPTPFTPEDLE 72

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIAS-------GAAALLGTKYNDRVRVV-SVEYED 685
            I   +  II +NLP++  ++ R +  A           ++L     D       +   D
Sbjct: 73  KIAAEMGRIIGKNLPIIREVLERSEITAEIERLNQPYKRSILERIPPDETITRYFIGSPD 132

Query: 686 GG-----------------VHSSALCGGTHVSSTGEIML--LYIVSESSIRAGIR----- 721
            G                      LC G H++STGEI      +    S+          
Sbjct: 133 AGRSDREPSLIDGAVSPPEEFWWDLCAGPHLNSTGEINPDAFAL---ESVAGAYWQGDEK 189

Query: 722 -----RIEAITGQ---RARSHLMGQDEKL----KSLASFLK 750
                RI     Q     +++L  ++E      + L   LK
Sbjct: 190 QPQLQRIYGTAWQTPAELQNYLQQKEEAQRRDHRKLGQQLK 230


>gi|325694840|gb|EGD36745.1| threonine--tRNA ligase [Streptococcus sanguinis SK150]
          Length = 647

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 12/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + ++ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIHL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           +  I++ +L  IE+ +  I+ +N P +   + +++A       
Sbjct: 93  GVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSIREEVTKDEAREIF--- 149

Query: 667 LLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                Y   +     E E G           LC G HV STG I + +++   ++     
Sbjct: 150 -KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL---NVAGAYW 205

Query: 722 R 722
           R
Sbjct: 206 R 206


>gi|189466356|ref|ZP_03015141.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
 gi|189434620|gb|EDV03605.1| hypothetical protein BACINT_02731 [Bacteroides intestinalis DSM
           17393]
          Length = 646

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   +      +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEATIKESDLPAIEAKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           ++A+   VV   +++ DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LVAKKEAVVRESISKADALTKFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + ++S +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLMSVAGAYWRGHEDRKMMTRIYGIT 221


>gi|160889627|ref|ZP_02070630.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|317479178|ref|ZP_07938315.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
 gi|156860619|gb|EDO54050.1| hypothetical protein BACUNI_02053 [Bacteroides uniformis ATCC 8492]
 gi|316904666|gb|EFV26483.1| threonyl-tRNA synthetase [Bacteroides sp. 4_1_36]
          Length = 646

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +    +   G  I  +G  +DV   +      +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGILFGIGPAI-ENGFYYDVDPGETTIKEADLPAIEKKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           ++A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LVAKKEAVVRQDIAKADALKMFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + + S +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|153870647|ref|ZP_02000003.1| threonyl-tRNA synthetase [Beggiatoa sp. PS]
 gi|152072887|gb|EDN69997.1| threonyl-tRNA synthetase [Beggiatoa sp. PS]
          Length = 191

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
           + D   +IG G+       +    G      +    ++  ++ L +  D        I H
Sbjct: 20  VADVATSIGPGLA------KAAIAGKINDRLVDTSTMIEDDVQLAIITDRDPDGLEIIRH 73

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S  HL+  A+ ++  +     G  +   G  +D  + K  +  +L+ I+  + +++AQN 
Sbjct: 74  SCAHLMAQAVKSLFPTAQVTIGPVV-EHGFYYDFAYEKSFSPEDLEKIQAKMEELVAQNF 132

Query: 648 PVVTRIMNREDAIASG 663
            V   +M+R +AI   
Sbjct: 133 TVTRSVMSRHEAIQFF 148


>gi|270293969|ref|ZP_06200171.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
 gi|270275436|gb|EFA21296.1| threonyl-tRNA synthetase [Bacteroides sp. D20]
          Length = 646

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   +      +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGETTIKEADLPAIEKKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           ++A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LVAKKEAVVRQDIAKADALKMFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + + S +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|328866339|gb|EGG14724.1| threonyl-tRNA synthetase [Dictyostelium fasciculatum]
          Length = 706

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 11/134 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  AL  + G  +    +  T DG  +D+ T  K ++S + + I++ VN I+A+
Sbjct: 146 HSSAHVLGQALELVYGGQLCIGPA--TQDGFYYDMATGDKLVSSEDYEIIQEVVNKIVAE 203

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
             P     + R+ A+          KY   +       +   ++       LC G H+ +
Sbjct: 204 KQPFERLAVPRDLALEMFKYN----KYKTEIISKIPAEDTVSLYRCGTLVDLCRGPHLPN 259

Query: 702 TGEIMLLYIVSESS 715
           T  I    +V  SS
Sbjct: 260 TSYIKAFKVVKNSS 273


>gi|295101322|emb|CBK98867.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Faecalibacterium
           prausnitzii L2-6]
          Length = 594

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 573 LTIDY--QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITS 629
             +D   Q++    I H+A H++  A+  +        G   T +G  +DV      +T 
Sbjct: 8   GHVDECPQDQELHVIRHTAAHVMAQAIKRLYPEADFAFGPA-TENGFYYDVDLGDTKLTD 66

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG---TKYNDRVRVVSVEYEDG 686
            +L +IE  ++ I  +NL +   I+ R +A+                D        +   
Sbjct: 67  EDLANIEKEMHKITKENLAIKPFILPRAEAVKLMEERHENYKVEHMADLADETEFSFFQQ 126

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G +   +C G H++ T  +    I  +S 
Sbjct: 127 GEYVD-MCIGPHLTYTKALKAFKITQQSG 154


>gi|242309942|ref|ZP_04809097.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
 gi|239523239|gb|EEQ63105.1| threonyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489]
          Length = 605

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 19/174 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+  HL+  A+ ++        G  +  +G  +D   ++ I+  +LK+IE  + +I  
Sbjct: 41  MRHTCAHLMAEAIKSLYPEAQFFVGPVV-EEGFYYDFRVNQKISEEDLKNIESKMKEIAK 99

Query: 645 QNLPVVTRIMNREDAIASG-----AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +   +    + R+ AI          A++        R+    Y  G      LC G H+
Sbjct: 100 KGEKITKYYLPRDKAIEKFKNDDLKQAVISRIPEGDGRLSI--YSQGDFED--LCRGPHL 155

Query: 700 SSTGEIMLLYIVSESS-------IRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
            +   +    +   +            + RI   A   + + +  + Q E+ K 
Sbjct: 156 PTLKLLNAFKLTKIAGAYLGGDEKAEMLVRIYGIAFADKESLNQYLHQMEEAKK 209


>gi|94676542|ref|YP_588910.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123081480|sp|Q1LT04|SYT_BAUCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|94219692|gb|ABF13851.1| threonyl-tRNA synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 642

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S  HLL HA+  +        G  I   G  +D+     +   ++ ++E  ++ +  +N 
Sbjct: 74  SCNHLLGHAIKQLWPEAKMTIGKIID-KGFYYDIDLEHKLQPEDIDALEKCMHTLANKNY 132

Query: 648 PVVTRIMNREDAIASG-------AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +V + ++ + A             A+L    N    V    YE+       +C G H  
Sbjct: 133 NIVKKYVSWQQAREIFQANGEIYKVAILDDNINQHTLVALYYYEE----YVDMCRGPHAP 188

Query: 701 STGEIMLLYIVSES 714
           +        +   S
Sbjct: 189 NIRFCHHFKLQKTS 202


>gi|302518003|ref|ZP_07270345.1| threonyl-tRNA synthetase [Streptomyces sp. SPB78]
 gi|302426898|gb|EFK98713.1| threonyl-tRNA synthetase [Streptomyces sp. SPB78]
          Length = 658

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  I        G  +  DG  +D    KP T  +LK++E  + +I  
Sbjct: 71  LRHSTAHVMAQAVQEIFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAVEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN---DRVRVVSVEYEDGGVHS------ 690
           +      R+++ +DA A          L+G K     +    V V   +  ++       
Sbjct: 130 RGQRFSRRVVSEDDARAELADEPYKLELIGLKGGSTSEDGSAVEVGGNELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPTTRLIPAFKLM---RNAAAYWR 223


>gi|163788630|ref|ZP_02183075.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
 gi|159875867|gb|EDP69926.1| N-acetylmuramic acid-6-phosphate etherase [Flavobacteriales
           bacterium ALC-1]
          Length = 646

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 90/236 (38%), Gaps = 32/236 (13%)

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F    +     L T+ SL L     +  + +  HS+ H+L  AL  +        G  I 
Sbjct: 40  FDDTVVETTTPLTTDGSLTLYTFRDDEGKKAFWHSSAHVLAQALEELYPDVKLWVGPAID 99

Query: 614 PDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
            +G  +DV   + + S  + K+IE+ + +I         R +++ +A++         K 
Sbjct: 100 -NGFYYDVDLGEGVISEKDFKTIENKMIEIARGKHDFKMRDVSKAEALSYY-------KS 151

Query: 673 NDRVRVVSVEYEDGGVHSSA-------LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            +  +V  +E  + G  S         LC G H+ +TG I  + I+S             
Sbjct: 152 KNNYKVDLIEGLEDGTISFCDHSTFTDLCRGGHIPNTGIIKAVKILS------------- 198

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           + G  A       +++L  +       Q  +   +  + EE +K       ++L+L
Sbjct: 199 VAG--AYYKGDENEKQLTRVYGVSFPKQKELTEHL-HLLEEAKKRDHRKLGKELEL 251


>gi|108799209|ref|YP_639406.1| threonyl-tRNA synthetase [Mycobacterium sp. MCS]
 gi|119868325|ref|YP_938277.1| threonyl-tRNA synthetase [Mycobacterium sp. KMS]
 gi|126434867|ref|YP_001070558.1| threonyl-tRNA synthetase [Mycobacterium sp. JLS]
 gi|122977050|sp|Q1B9T4|SYT_MYCSS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225465|sp|A3PYU0|SYT_MYCSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225466|sp|A1UF79|SYT_MYCSK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|108769628|gb|ABG08350.1| Ser-tRNA(Thr) hydrolase [Mycobacterium sp. MCS]
 gi|119694414|gb|ABL91487.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Mycobacterium
           sp. KMS]
 gi|126234667|gb|ABN98067.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Mycobacterium
           sp. JLS]
          Length = 684

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 27/185 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+  +        G  IT DG  +D    +  T  +L+++E  +  I+ 
Sbjct: 76  IRHSAAHVLAQAVQDLFPEAKLGIGPPIT-DGFYYDFDVPRAFTPEDLEALEKKMRKIVK 134

Query: 645 QNLPVVTRIMNRED------AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
                  R+   E+      A       L+  K  D   V+ V  ++   + +       
Sbjct: 135 DGQLFERRVYESEEEARRELANEPYKLELVDDKSGDP-EVMEVGGDELTAYDNLNPRTRE 193

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDE 740
                LC G H+ +T  I    +   S+         A ++RI   T   ++  L    E
Sbjct: 194 RVWGDLCRGPHIPTTKYIPAFKLTRSSAAYWRGDQTNASLQRIYG-TAWESQEALDRHLE 252

Query: 741 KLKSL 745
            ++  
Sbjct: 253 LIEEA 257


>gi|318057114|ref|ZP_07975837.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actG]
 gi|318075787|ref|ZP_07983119.1| threonyl-tRNA synthetase [Streptomyces sp. SA3_actF]
          Length = 658

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  I        G  +  DG  +D    KP T  +LK++E  + +I  
Sbjct: 71  LRHSTAHVMAQAVQEIFPEAKLGIGPPV-KDGFYYDFDVEKPFTPEDLKAVEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN---DRVRVVSVEYEDGGVHS------ 690
           +      R+++ +DA A          L+G K     +    V V   +  ++       
Sbjct: 130 RGQRFSRRVVSEDDARAELADEPYKLELIGLKGGSTSEDGSAVEVGGNELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPTTRLIPAFKLM---RNAAAYWR 223


>gi|293364941|ref|ZP_06611658.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307703194|ref|ZP_07640140.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
 gi|291316391|gb|EFE56827.1| threonine--tRNA ligase [Streptococcus oralis ATCC 35037]
 gi|307623269|gb|EFO02260.1| threonyl-tRNA synthetase [Streptococcus oralis ATCC 35037]
          Length = 647

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 73/204 (35%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNTAGQISNEDLPRIEEEMQKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           + +N P +   + +++A               ++++    +++ ++        LC G H
Sbjct: 129 VKENFPSIREEVTKDEAREIFKNDPYKLELIEEHSEDEGGLTIYHQG---EYVDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + STG I + +++    +     R
Sbjct: 186 IPSTGRIQIFHLL---HVAGAYWR 206


>gi|269860011|ref|XP_002649729.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
 gi|263511674|sp|B7XIA1|SYTC_ENTBH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|220066924|gb|EED44394.1| threonyl-tRNA synthetase [Enterocytozoon bieneusi H348]
          Length = 634

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 12/201 (5%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID---- 576
           Y    GQ+    C     I  ++       + I           + TE++    I+    
Sbjct: 4   YVTFKGQV-QKICISSGTILQELISTHYPNKNIIACAIDGIMADINTEINENQKIELYDF 62

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                Q    HS+ H+L +AL  +    +    +    +G  +D+   +PI   +   IE
Sbjct: 63  DSKEGQHVYWHSSAHILGNALVNLYQCKLVNGPAL--DEGFYYDIDIERPIREEDFADIE 120

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSSALC 694
             +  II +N+    +++ ++D +           +  N    ++SV Y D       +C
Sbjct: 121 KEMQRIINKNIDFRKKMIKKDDLLKMYKDNDYKVHFINNIPDNLISVYYND---EFYDMC 177

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G H+ STG +    I+  SS
Sbjct: 178 QGPHIQSTGLVKAFKILKSSS 198


>gi|282860076|ref|ZP_06269157.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella bivia JCVIHMP010]
 gi|282587164|gb|EFB92388.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Prevotella bivia JCVIHMP010]
          Length = 140

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           T +   + +   +H+  +LL+  +  + G   S N                KP    E  
Sbjct: 5   TFNEHGKDEFPPSHTTEYLLNQLMFRMFGCDRSSNAHFERKKSKMTFTLDHKPDRKEEKT 64

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
            +E+ V  +I +++PV   +++R+          L    +  +R+  +     G +    
Sbjct: 65  IVEEMV-RLIEEDMPVTYEVVDRDHIPEGIDLTRLPEDVSKMLRIARI-----GDYDICP 118

Query: 694 CGGTHVSSTGEIMLLYIVS 712
           C G HV S  +I    ++ 
Sbjct: 119 CLGKHVKSIAQIGKFELLG 137


>gi|254881560|ref|ZP_05254270.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294778842|ref|ZP_06744259.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
 gi|254834353|gb|EET14662.1| threonyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA]
 gi|294447295|gb|EFG15878.1| threonine--tRNA ligase [Bacteroides vulgatus PC510]
          Length = 646

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + I    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAIIKEADLPAIEAKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   +V + + +EDA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEILVRQSIAKEDALKKFGER--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H++ST  I  + ++S +         R  + RI  IT
Sbjct: 185 HLTSTAPIKAIKLLSVAGAYWRGQEDRKQMTRIYGIT 221


>gi|167763511|ref|ZP_02435638.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
 gi|167698805|gb|EDS15384.1| hypothetical protein BACSTE_01885 [Bacteroides stercoris ATCC
           43183]
          Length = 646

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 16/176 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  +  +VL      + + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PISEDAEVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +      +L +IE  + ++ A+   VV   +++ DA+        G  Y   + +  +E
Sbjct: 109 GETAIKEADLPAIEKKMAELAAKKEAVVRESISKTDALKMFGDR--GETYKCEL-ISELE 165

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 ++      LC G H+ +T  I  + + S +         R  + RI  IT
Sbjct: 166 DGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|265751997|ref|ZP_06087790.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
 gi|263236789|gb|EEZ22259.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA]
          Length = 646

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + I    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAIIKEADLPAIEAKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   +V + + +EDA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEILVRQSIAKEDALKKFGER--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H++ST  I  + ++S +         R  + RI  IT
Sbjct: 185 HLTSTAPIKAIKLLSVAGAYWRGQEDRKQMTRIYGIT 221


>gi|290580052|ref|YP_003484444.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
 gi|254996951|dbj|BAH87552.1| putative threonyl-tRNA synthetase [Streptococcus mutans NN2025]
          Length = 649

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 11/151 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D+++   +   HSA HL   A   +        G  I           +  I++ +L  I
Sbjct: 63  DHEDALDILR-HSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRI 121

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSS 691
           E+ +  I+ +N P V   + +++A               ++++    +++  +       
Sbjct: 122 EEEMKKIVKENFPSVREEVTKDEAREIFKNDPYKLELIEEHSEDAGGLTIYRQG---EYV 178

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            LC G HV STG I + +++   ++     R
Sbjct: 179 DLCRGPHVPSTGRIQVFHLL---NVAGAYWR 206


>gi|189183871|ref|YP_001937656.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
 gi|238692247|sp|B3CSS5|SYT_ORITI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189180642|dbj|BAG40422.1| threonyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda]
          Length = 648

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 21/222 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H   H+L  A+  +        G  I  DG  +D    KP TS +L+ IE  + DII 
Sbjct: 71  LRHDTAHILAQAVKKLFPDTQVVIGPVI-KDGFYYDFARDKPFTSKDLEIIEQEMQDIIT 129

Query: 645 QNLPVVTRIMNREDAIASGA--AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +N  +   +  R  AI            K  + +            +   LC G H  ST
Sbjct: 130 KNDLIQREVWLRAKAIEFFKQQKEFYKVKLIEEIPESEEISIYRQGNFVDLCRGPHSPST 189

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL---KVSQGNVVGR 759
           G          + +     R               ++E L+ +       K    + + R
Sbjct: 190 GYCA--KYFKLTKVSGAYWR------------GNSKNESLQRIYGTAWGKKSDLDSYLHR 235

Query: 760 VEEIWEE-YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800
           + E  +  +RKL         Q   + +             I
Sbjct: 236 LSEAQKRDHRKLGRELELFHFQDEAQGMPFWHSKGWTIFKII 277


>gi|78189671|ref|YP_380009.1| threonyl-tRNA synthetase, class IIA [Chlorobium chlorochromatii
           CaD3]
 gi|123729828|sp|Q3APV9|SYT_CHLCH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78171870|gb|ABB28966.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           chlorochromatii CaD3]
          Length = 657

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 19/197 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+  A+  +        G  I   G  +DV+        +L++IE  + +I  ++
Sbjct: 82  HSSSHLMAQAIEELFAGSKFGAGPAI-EQGFYYDVSSEHRFREEDLRAIEARMLEISKRD 140

Query: 647 LPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             V  + M+RE+AIA   +            + ++ V           + LC G H+ S 
Sbjct: 141 SSVQRQEMSREEAIAFFTSVRNDPYKVEILTETLKNVERVSLYHQGDFTDLCTGPHLPS- 199

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
                +  V  ++I A   R     G   R  +             LK      V R+EE
Sbjct: 200 --TGKIKAVLLTNISASYWR-----GDSNREQMQRIYGITFPSEKLLK----EHVARIEE 248

Query: 763 IWEEYRKLQLIHAKRKL 779
              + R  + + A+ +L
Sbjct: 249 --AKRRDHRKLGAELEL 263


>gi|323351205|ref|ZP_08086861.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
 gi|322122429|gb|EFX94140.1| threonine--tRNA ligase [Streptococcus sanguinis VMC66]
          Length = 647

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  DILRHSAAHLFAQAARRLFPDIHLGVGPAIQDGFYYDTDNEAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + ++ A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDQAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|162452628|ref|YP_001614995.1| hypothetical protein sce4352 [Sorangium cellulosum 'So ce 56']
 gi|161163210|emb|CAN94515.1| thrS [Sorangium cellulosum 'So ce 56']
          Length = 753

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 70/193 (36%), Gaps = 21/193 (10%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI-TSAELKSIEDNVN 640
           + +INHSA HL+  A+  +        G     D   +D   +    T ++L+ IE  V 
Sbjct: 69  RDTINHSAEHLMATAVLRLFPGAKVTMGPKNHGDEFYYDFDVAGRTFTPSDLEMIEAEVK 128

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            +I Q +      +++++A+    +     +Y + +     E +   ++       +C G
Sbjct: 129 KLIEQKIKFELHSVHKKNALTYFESLGQKNEYKEEILSWIPE-DSISIYRCGEFVDICRG 187

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
            H+   G I    I S S                A        + L+ +      ++ ++
Sbjct: 188 PHLPHAGFIKGFKITSSS---------------AAYWRADATKQSLQRVRGVAFPNKDDL 232

Query: 757 VGRVEEIWEEYRK 769
              V  + E  ++
Sbjct: 233 DKYVRRLEEAKKR 245


>gi|302561695|ref|ZP_07314037.1| threonyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
 gi|302479313|gb|EFL42406.1| threonyl-tRNA synthetase [Streptomyces griseoflavus Tu4000]
          Length = 658

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI-- 642
           + HS  H++  A+  +        G  +  DG  +D    KP    +LK+IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDVDKPFHPDDLKAIEKKMQEIQK 129

Query: 643 --IAQNLPVVTRIMNRED-AIASGAAALLGTKYN---DRVRVVSVEYEDGGVHS------ 690
                +  VVT    RE+ A       L+G K +   D    V V   +  ++       
Sbjct: 130 RGQRFSRRVVTDEAAREELADEPYKLELIGLKGSASHDDGADVEVGSGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 223


>gi|225868159|ref|YP_002744107.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
 gi|259516675|sp|C0MCN7|SYT_STRS7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|225701435|emb|CAW98547.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus]
          Length = 648

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGQLIDTTRAIEEDGSIEIITADHEDAFEVLRHSAAHLFAQAAKRLFPKLHL 92

Query: 607 QNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
             G  I  DG  +D  +    I++ +L  IE+ +  I+ +N P +   + +E+A+     
Sbjct: 93  GVGPAI-ADGFYYDTDNADGQISNEDLPRIEEEMKKIVKENFPCIREEITKEEALELFKD 151

Query: 666 ALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                +  +     +     Y  G      LC G HV STG I + +++   ++     R
Sbjct: 152 DPYKVELINEHADDAAGLTVYRQGEF--VDLCRGPHVPSTGRIQVFHLL---NVAGAYWR 206


>gi|212691282|ref|ZP_03299410.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|237712289|ref|ZP_04542770.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
 gi|237726428|ref|ZP_04556909.1| threonyl-tRNA synthetase [Bacteroides sp. D4]
 gi|212666514|gb|EEB27086.1| hypothetical protein BACDOR_00773 [Bacteroides dorei DSM 17855]
 gi|229434954|gb|EEO45031.1| threonyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4]
 gi|229453610|gb|EEO59331.1| threonyl-tRNA synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 646

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + I    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAIIKEADLPAIEAKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   +V + + +EDA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEILVRQSIAKEDALKKFGER--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H++ST  I  + ++S +         R  + RI  IT
Sbjct: 185 HLTSTAPIKAIKLLSVAGAYWRGQEDRKQMTRIYGIT 221


>gi|78776267|ref|YP_392582.1| threonyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251]
 gi|78496807|gb|ABB43347.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 602

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 13/168 (7%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K  G  +     +      E    + +D        + HS  HL+  A+ ++        
Sbjct: 7   KHNGEIIDMQTAKECGFEGEQ---ILLDNSEESLNVLRHSTAHLMAQAIKSLYPDAKFFV 63

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  +  +G  +D   S  I   +LK+IE  +  +  +   +    ++ ++A         
Sbjct: 64  GPNV-KEGFYYDFKTSSEIGEGDLKNIEKEMLSLAKKKYEIEKYEISMDEAKEK-----F 117

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVS 712
              +     +  +  +   ++       LC G H+ + G I    +  
Sbjct: 118 KDDHLKLFVMQRIPGDRVSIYKQGEFEDLCRGPHLPNIGLIRYFKLTK 165


>gi|146276901|ref|YP_001167060.1| threonyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|166225490|sp|A4WQU1|SYT_RHOS5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145555142|gb|ABP69755.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 646

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  +  +G  +D    +  T  +L +IE  + +II 
Sbjct: 74  IRHDLAHIMARAVQELWPDVKVTIGPVV-ANGWYYDFDREETFTPEDLGAIEKRMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
               V T   +R+ AIA   A   G  +   +       +   ++       LC G H+ 
Sbjct: 133 ARDAVRTETWDRDRAIAHYEAR--GENFKVELVQAIPADQQIRMYWHGNWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
            TG++      ++S +       S    ++RI      T    +++L   +E  K 
Sbjct: 191 HTGQVPADAFQLMSVAGAYWRGDSNNKQLQRIYGVAFKTRDELKAYLHMLEEAAKR 246


>gi|300814791|ref|ZP_07095034.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511099|gb|EFK38356.1| threonine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 636

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 17/172 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA+HL+ +A+ T+  +     G  I   G  +D+         + ++IE  + ++  ++
Sbjct: 72  HSASHLMAYAIETLYPNTKFAIGPAID-SGFYYDMDLDHRFVEEDFQAIEKKMIELARED 130

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SALCGGTHVSST 702
           L +V   + R+ AI        G  Y   +     E E   ++     + LC G H+ ST
Sbjct: 131 LKIVRVDITRDAAIKYF--KEKGQDYKVELIEDLAEDEPITLYQMGEFTDLCRGPHLEST 188

Query: 703 GEIMLLYIVSES-------SIRAGIRRIEAIT---GQRARSHLMGQDEKLKS 744
            +I  + ++S +       S    ++RI  I     ++   ++  ++E  K 
Sbjct: 189 KKIKAVKLLSTAGAYWRGDSNNKMLQRIYGIAFDKKKKLDEYIEKREEAEKR 240


>gi|145594327|ref|YP_001158624.1| threonyl-tRNA synthetase [Salinispora tropica CNB-440]
 gi|145303664|gb|ABP54246.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Salinispora
           tropica CNB-440]
          Length = 671

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +        G  I  +G  +D    +P    +L  +E  + +II 
Sbjct: 75  LRHSTAHVLAQAVQDLFPEAKLGIGPPI-ENGFYYDFAVDQPFQPEDLTKLEKRMQEIIK 133

Query: 645 QN-LPVVTRIMNREDAIASGAAALLGTKY-------NDRVRVVSVEYEDGGVHS------ 690
                   R  + ++A    AA     +         D  +V+ V   +   +       
Sbjct: 134 SGQRFRRRRFRDLDEARGELAAEPFKLELIELKGDGLDSSQVMEVGGGELTSYDNLAADA 193

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                S LC G H+ +T  I    ++      A   R
Sbjct: 194 DKVCWSDLCRGPHLPNTRLIGAFKLM---RSAAAYWR 227


>gi|260575744|ref|ZP_05843741.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
 gi|259022142|gb|EEW25441.1| threonyl-tRNA synthetase [Rhodobacter sp. SW2]
          Length = 648

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  +        G  I  DG  +D    +P T  +L +IE  + +II 
Sbjct: 74  IRHDLAHVMARAVQELWPDVKVTIGPVI-KDGWYYDFDRIEPFTPEDLGAIEKRMKEIIN 132

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----SSALCGGTHVS 700
               V T + +R  AIA       G  +   +       E   ++       LC G H+ 
Sbjct: 133 LRDVVRTEVWDRPRAIAHYEQK--GEPFKVELIHGIPGDEPLRMYWHGHWQDLCRGPHLQ 190

Query: 701 STGEI--MLLYIVSESSIRAGIRR 722
            TG++      ++S   +     R
Sbjct: 191 HTGQLPADAFKLMS---VAGAYWR 211


>gi|212224582|ref|YP_002307818.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
 gi|212009539|gb|ACJ16921.1| alanyl-tRNA synthetase [Thermococcus onnurineus NA1]
          Length = 151

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGS-CITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H++  A+  +LG       S  +  +  R  V   + +T  E+  IE   N  +
Sbjct: 7   RAHTALHVVKGAVVKVLGEGAKWTASVYVGGNHGRLTVKFDRKLTPEEVAEIERLANKKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+P+    + R +A       +    +     V +++       +   C   H ++TG
Sbjct: 67  KENVPIHIYELPRNEAEKRFGEDMYDL-FPILPEVKTLKVAVIEDWNVNACKEEHTATTG 125

Query: 704 EIMLLYIVS 712
           EI  + I  
Sbjct: 126 EIGRIKIRK 134


>gi|290961808|ref|YP_003492990.1| threonine-tRNA synthetase [Streptomyces scabiei 87.22]
 gi|260651334|emb|CBG74456.1| threonine-tRNA synthetase [Streptomyces scabiei 87.22]
          Length = 658

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK++E  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-RDGFYYDFDVEKPFTPEDLKAVEKKMQEIQR 129

Query: 645 QNLPVVTRIMNREDAIASGA--------AALLGTKYNDRVRVVSVEYEDGGVHS------ 690
           +      R++  E A    A          L G+  +D    V V   +  ++       
Sbjct: 130 RGQRFSRRVVTDEAAREELADEPYKLELIGLKGSASSDDGADVEVGAGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GDLCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 223


>gi|195978510|ref|YP_002123754.1| threonyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975215|gb|ACG62741.1| threonyl-tRNA synthetase ThrS [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 655

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 40  KKALAGKFNGQLIDTTRAIEEDGSIEIITADHEDAFEVLRHSAAHLFAQAAKRLFPKLHL 99

Query: 607 QNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
             G  I  DG  +D  +    I++ +L  IE+ +  I+ +N P +   + +E+A+     
Sbjct: 100 GVGPAI-ADGFYYDTDNADGQISNEDLPRIEEEMKKIVKENFPCIREEITKEEALELFKD 158

Query: 666 ALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                +  +     +     Y  G      LC G HV STG I + +++   ++     R
Sbjct: 159 DPYKVELINEHADDAAGLTVYRQGEF--VDLCRGPHVPSTGRIQVFHLL---NVAGAYWR 213


>gi|329113775|ref|ZP_08242547.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
 gi|326696901|gb|EGE48570.1| Threonyl-tRNA synthetase [Acetobacter pomorum DM001]
          Length = 640

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+S +        G   T  G  +D    +  T  +L  IE  +++I+ 
Sbjct: 69  IRHDTAHVLAQAVSELFPGTALATGPA-TEQGFFYDFAAERAFTDDDLVRIEARMHEIVD 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ P++     R+ A+A       G  Y   +            +       LC G H+ 
Sbjct: 128 RDEPIIREEWKRKSALAWCQEN--GQPYKAEIIRSLPADAVLSFYRQGNFVDLCRGPHLG 185

Query: 701 STGEIML-LYIVSESS-IRAGIR------RIEAITGQRARSHLMGQDEKLKSLAS 747
           STG+I     ++  +     G R      RI     + A + L   +++ +  A 
Sbjct: 186 STGQIGHEFRLLGTAGAYWKGDRNNPMLQRIHGTACRDA-NELAAWEQRQEEAAR 239


>gi|297195484|ref|ZP_06912882.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722098|gb|EDY66006.1| threonyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 657

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 85/255 (33%), Gaps = 56/255 (21%)

Query: 490 SIVKAIVQQGEIVEE--AVSGQKVE-VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
           S V+ I+Q+    EE    +G     +  ++T   A  GG+L D      DG        
Sbjct: 2   SDVRVIIQRDSEREERVVTTGTTAADLFPERTVVAARVGGELKDLSYEPKDGEE------ 55

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
                        VE   + +E  L +           + HS  H++  A+  +      
Sbjct: 56  -------------VEPVEISSEDGLNI-----------LRHSTAHVMAQAVQELFPEAKL 91

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-- 664
             G  +  DG  +D    KP    +LK+IE  + +I  +      R++  E A    A  
Sbjct: 92  GIGPPV-KDGFYYDFDVEKPFHPDDLKAIEKKMQEIQKRGQRFSRRVVTDEAAREELADE 150

Query: 665 ------AALLGTKYNDRVRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIML 707
                   L G+  +D    V V   +  ++              LC G H+ +T  I  
Sbjct: 151 PYKLELIGLKGSASSDDGADVEVGAGELTIYDNLDAKTGELCWKDLCRGPHLPTTRNIPA 210

Query: 708 LYIVSESSIRAGIRR 722
             ++      A   R
Sbjct: 211 FKLM---RNAAAYWR 222


>gi|300781050|ref|ZP_07090904.1| threonine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
 gi|300532757|gb|EFK53818.1| threonine--tRNA ligase [Corynebacterium genitalium ATCC 33030]
          Length = 701

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 61/194 (31%), Gaps = 37/194 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  DG  +D    +P T  +LK++E  +  II 
Sbjct: 90  IRHSCAHVLAQAVQEEFPDAKLGIGPAIN-DGFYYDFDVKEPFTPEDLKTLEKRMKKIIK 148

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVS 680
           Q    V     + E+A    A  L    Y                        D     +
Sbjct: 149 QGQKFVRGVYASTEEA----AEDLKNEPYKLELIQDKGSVDPNSDEATEVGAGDLTHYDN 204

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARS 733
           V      V    LC G HV +T  I    +   S+         AG++RI   T    + 
Sbjct: 205 VNPRTDEVVWHDLCRGPHVPTTKYIPAFALTRSSAAYWRGDQSNAGLQRIYG-TAWETKE 263

Query: 734 HLMGQDEKLKSLAS 747
            L      L+    
Sbjct: 264 KLEEYQHMLEEAEK 277


>gi|241894947|ref|ZP_04782243.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871665|gb|EER75416.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Weissella
           paramesenteroides ATCC 33313]
          Length = 699

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDI 642
           + HS +HLL  AL+ +    +         +G  +D    +   I+  +   IE  +  I
Sbjct: 113 LRHSVSHLLAQALNRLYPDQIHYGVGPFIANGFYYDTDKVEGNQISVDQFPEIEKMMKRI 172

Query: 643 IAQNLPVVTRIMNREDAIASG-----AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + +NLP+V+R ++R++A+           L+     D    ++V+ E        L  G 
Sbjct: 173 VKENLPIVSREISRDEALEMFKNDPYKIELINDLPADEHISIAVQGEH-----VELDRGG 227

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
            V STG I    + S   +     R
Sbjct: 228 LVPSTGWIKHFKLTS---VAGAYWR 249


>gi|314967879|gb|EFT11978.1| threonyl-tRNA synthetase [Propionibacterium acnes HL037PA1]
          Length = 689

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +             I HSATH++  A+  +        G  IT +G  +D  +
Sbjct: 54  ELHDGAEVEPVEATSEDGLNIIRHSATHVMAQAVQQLYPEVNLGIGPFIT-NGFYYDFGN 112

Query: 624 SKPITSAELKSIEDNVNDIIAQN----LPVVTRIMNRED-AIASGAAALLGTKYND-RVR 677
            +P+T   L  +E  +  I+ +N      V T    RE+ A       L+GTK       
Sbjct: 113 IEPVTPEVLSELEKRMKRIVKENQRFVRRVTTEESAREELADQPYKLELIGTKGKGAEGA 172

Query: 678 VVSVEYEDGGVHS----------SALCGGTHVSSTGEIM-LLYIVSES-SIRAG------ 719
            V V   +  ++             LC G HV ST  +     +   S +   G      
Sbjct: 173 SVEVGGGELTIYDNVRRNGEVAWKDLCRGPHVPSTKYLANTFALTKFSAAYWKGDQANDQ 232

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   +R  L    +++K  
Sbjct: 233 LQRIYG-TAWASREGLAAYQQRIKEA 257


>gi|302922168|ref|XP_003053410.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734351|gb|EEU47697.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 741

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 34/243 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G ++        P G  +D+ +     I   + K++E   N II 
Sbjct: 149 HSSAHILGEAAERRFGCYLCNGPPTEDPPGFYYDMANMGEQVIADEDKKALEQLSNSIIK 208

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHV 699
           Q  P     M +++ +     +    KY +      V                LC G HV
Sbjct: 209 QKQPFERLEMTKDELLEMFKYS----KYKEYFINQRVPDGTKSTVYRCGPLIDLCRGPHV 264

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +TG I    ++  S                A       +E ++ +A        +   +
Sbjct: 265 PTTGNIKAFSVLRNS---------------AAYWLGDSNNESVQRIAGI------SFPDK 303

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819
             +  EEY+      AKR  +   +D       +V+  S        +   ++MD L+ +
Sbjct: 304 --KQLEEYKHFLAEAAKRNHRKIGQDQKLFFFDEVSPGSTFFLPHGVRIYNALMDLLKGE 361

Query: 820 IQS 822
            + 
Sbjct: 362 YRK 364


>gi|221135764|ref|XP_002171169.1| PREDICTED: similar to Alanyl-tRNA synthetase domain-containing
           protein 1, partial [Hydra magnipapillata]
          Length = 122

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 10/130 (7%)

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            HLL                   +   +  +   +  IT  +L  +E   N+ I  + P+
Sbjct: 1   QHLLSAIAENKYNFRTVSWDLGKSISHVELN---TPKITEEQLTHLELICNEAIRNHKPL 57

Query: 650 VTRIMNREDA--IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
               + +++A  +    +  L     + +RV+ +E  +       +C GTHVS+   +  
Sbjct: 58  TVHYLTKQEALGLREVKSRGLPEDVIEPIRVIEIEGIE-----KNMCCGTHVSNLAHVQA 112

Query: 708 LYIVSESSIR 717
           + ++   ++R
Sbjct: 113 IKLMHTEAMR 122


>gi|152993995|ref|YP_001359716.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
 gi|166225510|sp|A6QD00|SYT_SULNB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|151425856|dbj|BAF73359.1| threonyl-tRNA synthetase [Sulfurovum sp. NBC37-1]
          Length = 604

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+  +        G  +  +G  +D   ++ I   +LK+IE  + ++I 
Sbjct: 42  IRHSTAHLMAQAIKELYPDAQFFVGPVVD-EGFYYDFRVNEKIGEEDLKTIEKKMKELIK 100

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +   +    +++++A+   A   L      R+   +V     G     LC G HV +   
Sbjct: 101 KKYKIEKYEISKDEALKKFANDDLKQAVLSRIPDETVSIYKQGDF-EDLCRGPHVPALRF 159

Query: 705 IMLLYIVSESS-------IRAGIRRIE--AITGQRARSHLMGQDEKLKS 744
           +    +   +            + RI   A   + +    +   E+ K 
Sbjct: 160 LHNFKLTRVAGAYLGGDENAEMLTRIYGIAFADKESLKSYLKMMEEAKK 208


>gi|302866733|ref|YP_003835370.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
 gi|302569592|gb|ADL45794.1| threonyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029]
          Length = 672

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +        G  I  +G  +D    KP    +L  +E  + +I+ 
Sbjct: 75  LRHSTAHVLAQAVQDVFPDAKLGIGPPI-ENGFYYDFGVDKPFQPDDLTKLEKRMQEIVK 133

Query: 645 QNLP-VVTRIMNREDAI-----ASGAAALLGTKYN--DRVRVVSVEYEDGGVHS------ 690
                   R  + ++A            L+  K    D   V+ V   +  ++       
Sbjct: 134 SGQRFRRRRFADLDEARSELAAEPYKLELIEVKGEGLDSSEVMEVGGGELTIYDNLAANE 193

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                S LC G H+ +T  I    ++      A   R
Sbjct: 194 DKVCWSDLCRGPHLPNTRLIGAFKLM---RSAAAYWR 227


>gi|163785549|ref|ZP_02180122.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879181|gb|EDP73112.1| threonyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 222

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 23/191 (12%)

Query: 534 AIGDGIRLQ-ITDVQKKAEGIFVHHAIVERGILR---TEMSLVLTIDYQNRRQLSINHSA 589
             G+G +++ +       E I VH  I + G LR    +    L I         + HS 
Sbjct: 27  LEGEGKKIKNVVGGVLNDEIIDVHTPIRQSGNLRFLTPKDKESLEI---------LRHSL 77

Query: 590 THLLHHALSTILGSHVSQNGSCITPD-GLRFDVT-HSKPITSAELKSIEDNVNDIIAQNL 647
            H++  AL  + G+     G   T D G  +DV    K +T  +L  IE+ + +II ++ 
Sbjct: 78  AHIMAQALKELYGTDKVHLGIGPTTDVGFFYDVEVEGKRLTEEDLPVIEEKMKEIIQRDC 137

Query: 648 PVVTRIMNREDAIASGAAALLGTKYN-DRVRVVSVEYEDGGVHSSA----LCGGTHVSST 702
            +  + + RE+A+       +   Y  D +R    E     ++       LC G H+ ST
Sbjct: 138 LIERQELPREEALQLFE--NMKEIYKVDLIRHDIPETAPISIYKQCDFVDLCRGPHIPST 195

Query: 703 GEI-MLLYIVS 712
           G+      + S
Sbjct: 196 GKAPTSFKLFS 206


>gi|296114661|ref|ZP_06833313.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978757|gb|EFG85483.1| threonyl-tRNA synthetase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 16/175 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H+L  A+S +        G   T  G  +D    +  T  +L  IE  +++I+ 
Sbjct: 32  IRHDTAHVLAQAVSELFPGTALATGPA-TEQGFFYDFAAERAFTDDDLVRIEARMHEIVD 90

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           ++ P++     RE A+A       G  Y   +            +       LC G H+ 
Sbjct: 91  RDEPIIREEWKRESALAWCQEN--GQPYKAEIIRSLPLDAVLSFYRQGNFVDLCRGPHLG 148

Query: 701 STGEIML-LYIVSESS-IRAGIR------RIEAITGQRARSHLMGQDEKLKSLAS 747
           STG+I     ++  +     G R      RI     + A + L   + + +  A 
Sbjct: 149 STGQIGHEFRLLGTAGAYWKGDRNNPMLQRIHGTACRDA-NELAAWERRQEEAAR 202


>gi|94495624|ref|ZP_01302204.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
 gi|94425012|gb|EAT10033.1| threonyl-tRNA synthetase [Sphingomonas sp. SKA58]
          Length = 665

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 24/180 (13%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIA 644
            H   H+L  A+  +        G   T DG  +D     +P T  +L +IE  +  IIA
Sbjct: 73  RHDFAHVLAEAVQALFPGTQITFGPA-TEDGFYYDFAPKDRPFTEEDLPAIEAEMRKIIA 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----------ALC 694
            + P+   +++R+  IA   AA  G  +  +      + E+  V+ S           +C
Sbjct: 132 ADKPLKREVIDRDTLIAQWEAA--GETFKAQWAAELPQGEELTVYHSGAPGSEGSWYDMC 189

Query: 695 GGTHVSSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSL 745
            G H++STG  +     +   S          A + RI   TG   +  L     +L+  
Sbjct: 190 RGPHLASTGKLDPQAFRLTRVSGAYWRGDQKNAMLSRIYG-TGWLNKKQLAEHLTRLEEA 248


>gi|307700804|ref|ZP_07637829.1| threonine--tRNA ligase [Mobiluncus mulieris FB024-16]
 gi|307613799|gb|EFN93043.1| threonine--tRNA ligase [Mobiluncus mulieris FB024-16]
          Length = 669

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 42/230 (18%)

Query: 565 LRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L    +L   TID +    +   HSATH++  A+  +        G  I  +G  +D   
Sbjct: 46  LHEGDALEAITIDSEMGLNILR-HSATHVMAQAVKQVRPDVKYGIGPFI-ENGFYYDFGV 103

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN-DRVR 677
           ++P T  +LK IE  +  I  ++   V R +  ++A            L+G K   D   
Sbjct: 104 AQPFTPEDLKEIEKYMARICKEDQRFVRRAVTEDEARQELADQPYKLELIGLKGGSDEDN 163

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G H+ ST  +     ++  S     
Sbjct: 164 DQAAAGASVEVGGAELTIYDNVRKNGETAWKDLCRGPHIPSTRLLSGAFKLLKVS----- 218

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                      A      +++ L+ +      ++  +   V  + E  ++
Sbjct: 219 ----------AAYWRGDQKNDSLQRIYGTAWPTKEELKAYVTRLEEAEKR 258


>gi|159037395|ref|YP_001536648.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
 gi|157916230|gb|ABV97657.1| threonyl-tRNA synthetase [Salinispora arenicola CNS-205]
          Length = 671

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 26/180 (14%)

Query: 564 ILRTEMSLV--LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621
               E ++V  + ID  +   +   HS  H+L  A+  +        G  I  +G  +D 
Sbjct: 53  WTPVEETVVEPVGIDTPDGLAVLR-HSTAHVLAQAVQDLFPEAKLGIGPPI-ENGFYYDF 110

Query: 622 THSKPITSAELKSIEDNVNDIIAQN-LPVVTRIMNREDAIASGAAALLGTKY-------N 673
              +P    +L  +E  + +II         R  N ++A    AA     +         
Sbjct: 111 AVDRPFQPEDLTKLEKRMQEIIKSGQRFRRRRFRNLDEARGELAAEPFKLELIELKGDGL 170

Query: 674 DRVRVVSVEYEDGGVHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           D  +V+ V   +   +            S LC G H+ +T  I    ++      A   R
Sbjct: 171 DSSQVMEVGGGELTSYDNLAADADKVCWSDLCRGPHLPNTRLIGAFKLM---RSAAAYWR 227


>gi|313674626|ref|YP_004052622.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
 gi|312941324|gb|ADR20514.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Marivirga
           tractuosa DSM 4126]
          Length = 654

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 22/215 (10%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I +G+   +     K  G            +  +  + L        Q +
Sbjct: 20  GVTGHDIAMSISEGLARNVLST--KVNGQVWDSTR----PINEDAHIQLLTWNDPEGQNT 73

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
             HS+ HLL  AL  +        G  I  +G  +DV    K +   EL+ IE  + ++ 
Sbjct: 74  FWHSSAHLLAEALEDMYPGIKFGIGPPI-ANGFYYDVDFGDKELQGEELEKIEQKMLELA 132

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTHV 699
            Q        +++++A         G +Y     + +    + +   G  +  LC G H+
Sbjct: 133 RQKNEYKRSEISKKEATEYYQKK--GDEYKLELIEGLNDGEITFYQQGNFTD-LCRGPHI 189

Query: 700 SSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
             TG I  + +++ +         R  + RI  IT
Sbjct: 190 PHTGYIKAVKLLNIAGAYWRGDEKRKQLTRIYGIT 224


>gi|315503148|ref|YP_004082035.1| threonyl-tRNA synthetase [Micromonospora sp. L5]
 gi|315409767|gb|ADU07884.1| threonyl-tRNA synthetase [Micromonospora sp. L5]
          Length = 671

 Score = 61.6 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +        G  I  +G  +D    KP    +L  +E  + +I+ 
Sbjct: 75  LRHSTAHVLAQAVQDVFPDAKLGIGPPI-ENGFYYDFGVDKPFQPDDLTKLEKRMQEIVK 133

Query: 645 QNLP-VVTRIMNREDAI-----ASGAAALLGTKYN--DRVRVVSVEYEDGGVHS------ 690
                   R  + ++A            L+  K    D   V+ V   +  ++       
Sbjct: 134 SGQRFRRRRFADLDEARSELAAEPYKLELIEVKGEGLDSSEVMEVGGGELTIYDNLAANE 193

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                S LC G H+ +T  I    ++      A   R
Sbjct: 194 DKVCWSDLCRGPHLPNTRLIGAFKLM---RSAAAYWR 227


>gi|225870895|ref|YP_002746842.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
 gi|225700299|emb|CAW94574.1| threonyl-tRNA synthetase [Streptococcus equi subsp. equi 4047]
          Length = 655

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + S+ +           + HSA HL   A   +      
Sbjct: 40  KKALAGKFNGQLIDTTRAIEEDGSIEIITADHEDAFEVLRHSAAHLFAQAAKRLFPKLHL 99

Query: 607 QNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
             G  I  DG  +D  +    I++ +L  IE+ +  I+ +N P +   + +E+A+     
Sbjct: 100 GVGPAI-ADGFYYDTDNADGQISNEDLPRIEEEMKKIVKENFPCIREEITKEEALELFKD 158

Query: 666 ALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                +  +     +     Y  G      LC G HV STG I + +++   ++     R
Sbjct: 159 DPYKVELINEHADDAAGLTVYRQGEF--VDLCRGPHVPSTGRIRVFHLL---NVAGAYWR 213


>gi|269977288|ref|ZP_06184261.1| threonyl-tRNA synthetase [Mobiluncus mulieris 28-1]
 gi|269934591|gb|EEZ91152.1| threonyl-tRNA synthetase [Mobiluncus mulieris 28-1]
          Length = 669

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 42/230 (18%)

Query: 565 LRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L    +L   TID +    +   HSATH++  A+  +        G  I  +G  +D   
Sbjct: 46  LHEGDALEAITIDSEMGLNILR-HSATHVMAQAVKQVRPDVKYGIGPFI-ENGFYYDFGV 103

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN-DRVR 677
           ++P T  +LK IE  +  I  ++   V R +  ++A            L+G K   D   
Sbjct: 104 AQPFTPEDLKEIEKYMARICKEDQRFVRRAVTEDEARQELADQPYKLELIGLKGGSDEDN 163

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G H+ ST  +     ++  S     
Sbjct: 164 DQAAAGASVEVGGAELTIYDNVRKNGETAWKDLCRGPHIPSTRLLSGAFKLLKVS----- 218

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                      A      +++ L+ +      ++  +   V  + E  ++
Sbjct: 219 ----------AAYWRGDQKNDSLQRIYGTAWPTKEELKAYVTRLEEAEKR 258


>gi|296876104|ref|ZP_06900158.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
 gi|296432815|gb|EFH18608.1| threonine--tRNA ligase [Streptococcus parasanguinis ATCC 15912]
          Length = 647

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 18/205 (8%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    +   +I + +       +K   G F    I     +  + ++ +         
Sbjct: 15  ESGVTTFEIAQSISNSLA------KKALAGKFNGKLIDTTRAITEDGNIEIVTPDHEDAL 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA HL   A   +        G  I           +  I++ +L  IE+ +  I
Sbjct: 69  PILRHSAAHLFAQAARRLFPDIHLGVGPAIEDGFYYDTDNQAGQISNEDLPRIEEEMKKI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGT 697
           + +N P +   + ++ A            Y   +     E E G           LC G 
Sbjct: 129 VKENFPSIREEVTKDQAREIF----KNDPYKLELIEEHSEDEGGLTIYRQGEYIDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG I + +++   ++     R
Sbjct: 185 HVPSTGRIQIFHLL---NVAGAYWR 206


>gi|229496081|ref|ZP_04389803.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316977|gb|EEN82888.1| threonyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 672

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HL+  A+  +        G  I  +G  +D+     I    +L  IE+ + +
Sbjct: 91  HAYWHTSAHLMAEAIQALYPHAQFGIGPAI-ENGFYYDIDTGDTILKESDLAKIEEKMLE 149

Query: 642 IIAQNLPVVTRIMNREDAIASGA--AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
              +  P+    +++++A+   A        +  + +   ++     G  +  LC G H+
Sbjct: 150 FAKEKQPLTRCSISKQEALKRFANEGQTYKVELINDLEDGTITTYSQGSFTD-LCRGPHL 208

Query: 700 SSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            +TG I  + ++S +         R  + RI  IT
Sbjct: 209 PNTGYIKAVKLLSVAGAYWRGDEKRKQLTRIYGIT 243


>gi|308805643|ref|XP_003080133.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058593|emb|CAL54300.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 625

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 21/210 (10%)

Query: 554 FVHHAIVERGILRTEMSL-----VLTIDYQNRRQLSINHSAT---HLLHHALSTILGSHV 605
             H   V R        +         D + RR +  +   T   H++  A+  +  S  
Sbjct: 15  IRHTVRVCRSFRVVGGGVGSTRGATRRDAEKRRLIGEDFLTTQSAHVMAMAVQKVFPSAQ 74

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              G  I   G  +D  + +  T+ ++K I+  +  II ++ P+    ++RE+A      
Sbjct: 75  CTIGPWIER-GFYYDFFYPEGFTNQDMKKIQKEMYKIIRKDYPLRREEVSREEAERRIRE 133

Query: 666 ALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTG--EIMLLYIVSESSIRAGIR 721
                K    D ++   +     G     LC G HV STG  +     +    S+     
Sbjct: 134 INEPYKLEILDAIKTEPITIYHIGDEWWDLCAGPHVESTGKLDQTAFEL---ESVAGAYW 190

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKV 751
           R     G   +  L          A  LK 
Sbjct: 191 R-----GDETKPMLQRIYGTAWENAEQLKA 215


>gi|306818771|ref|ZP_07452493.1| threonine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
 gi|304648457|gb|EFM45760.1| threonine--tRNA ligase [Mobiluncus mulieris ATCC 35239]
          Length = 692

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 42/230 (18%)

Query: 565 LRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L    +L   TID +    +   HSATH++  A+  +        G  I  +G  +D   
Sbjct: 69  LHEGDALEAITIDSEMGLNILR-HSATHVMAQAVKQVRPDVKYGIGPFI-ENGFYYDFGV 126

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN-DRVR 677
           ++P T  +LK IE  +  I  ++   V R +  ++A            L+G K   D   
Sbjct: 127 AQPFTPEDLKEIEKYMARICKEDQRFVRRAVTEDEARQELADQPYKLELIGLKGGSDEDN 186

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G H+ ST  +     ++  S     
Sbjct: 187 DQAAAGASVEVGGAELTIYDNVRKNGETAWKDLCRGPHIPSTRLLSGAFKLLKVS----- 241

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                      A      +++ L+ +      ++  +   V  + E  ++
Sbjct: 242 ----------AAYWRGDQKNDSLQRIYGTAWPTKEELKAYVTRLEEAEKR 281


>gi|227875460|ref|ZP_03993601.1| threonyl-tRNA synthetase [Mobiluncus mulieris ATCC 35243]
 gi|227844014|gb|EEJ54182.1| threonyl-tRNA synthetase [Mobiluncus mulieris ATCC 35243]
          Length = 692

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 42/230 (18%)

Query: 565 LRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           L    +L   TID +    +   HSATH++  A+  +        G  I  +G  +D   
Sbjct: 69  LHEGDALEAITIDSEMGLNILR-HSATHVMAQAVKQVRPDVKYGIGPFI-ENGFYYDFGV 126

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN-DRVR 677
           ++P T  +LK IE  +  I  ++   V R +  ++A            L+G K   D   
Sbjct: 127 AQPFTPEDLKEIEKYMARICKEDQRFVRRAVTEDEARQELADQPYKLELIGLKGGSDEDN 186

Query: 678 V-------VSVEYEDGGVHS----------SALCGGTHVSSTGEI-MLLYIVSESSIRAG 719
                   V V   +  ++             LC G H+ ST  +     ++  S     
Sbjct: 187 DQAAAGASVEVGGAELTIYDNVRKNGETAWKDLCRGPHIPSTRLLSGAFKLLKVS----- 241

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                      A      +++ L+ +      ++  +   V  + E  ++
Sbjct: 242 ----------AAYWRGDQKNDSLQRIYGTAWPTKEELKAYVTRLEEAEKR 281


>gi|327470637|gb|EGF16093.1| threonine--tRNA ligase [Streptococcus sanguinis SK330]
          Length = 645

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 61/181 (33%), Gaps = 12/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + ++ +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIHL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I              I++ +L  IE+ +  I+ +N P +   + +++A       
Sbjct: 93  GVGPAIQDGFYYDTDNEVGQISNEDLPRIEEEMKKIVKENFPSIREEVTKDEAREIF--- 149

Query: 667 LLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                Y   +     E E G           LC G HV STG I + +++   ++     
Sbjct: 150 -KNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLL---NVAGAYW 205

Query: 722 R 722
           R
Sbjct: 206 R 206


>gi|227496236|ref|ZP_03926533.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834224|gb|EEH66607.1| threonine--tRNA ligase [Actinomyces urogenitalis DSM 15434]
          Length = 679

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 71/209 (33%), Gaps = 27/209 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T   +             + HSATH++  A+  I        G  IT DG  +D  +
Sbjct: 48  ELHTGAVVEPITLASQDGLNILRHSATHVMAQAVQEIFPEVNLGIGPFIT-DGFYYDFGN 106

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED-----AIASGAAALLGTKYNDRVRV 678
              +T   LK IE  +  I+ +    V R ++ E+     A       L+ TK       
Sbjct: 107 IDAVTPELLKDIEKRMKRIVKEGQSFVRREISEEEGRVELADQPYKLELIDTKGKGAEAS 166

Query: 679 VSVEYEDGG------------VHSSALCGGTHVSSTGEIM-LLYIVSESS-------IRA 718
            SVE   GG            V    LC G H+ ST  I     +   SS          
Sbjct: 167 ASVEVGAGGLTIYDNVRRNGEVAWKDLCRGPHLPSTKLIGQGFALTKSSSAYWKGDQHGD 226

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            ++RI   T   ++  L     +L   A 
Sbjct: 227 SLQRIYG-TAWASKEDLKAYQTRLAEAAK 254


>gi|282881717|ref|ZP_06290380.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281304476|gb|EFA96573.1| threonine--tRNA ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 655

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 16/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  I  +G  +DV   +   I+  +   IE  + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAI-ENGFFYDVMPKEGTTISETDFPKIEAKMM 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N PVV R +++ DA+        G  Y        +E      ++      LC G
Sbjct: 128 ELAKKNEPVVRRNISKADALKEFQED--GQDYKCEHIDQDLEDGTISTYTQGHFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+ STG I  + I S +         R  + RI  IT
Sbjct: 186 PHLLSTGLIKAVKITSVAGAFWRGDAKREQMTRIYGIT 223


>gi|197294184|ref|YP_001798725.1| threonyl-tRNA synthetase [Candidatus Phytoplasma australiense]
 gi|226701405|sp|B1V8W6|SYT_PHYAS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|171853511|emb|CAM11353.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma australiense]
          Length = 641

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 25/239 (10%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K    +F    I     L  +  L +  +   +    +NHS  HL+  A+  +  + + 
Sbjct: 33  KKPVAALFNQKFIELDYPLTQDGDLEILAESNPKSLFVLNHSTAHLMAQAIQRLYPNALF 92

Query: 607 QNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
             G  I  +G  +D+   +  I+  +L +IE  ++++  +N  ++ + +  ++A    + 
Sbjct: 93  TIGPAI-KEGFYYDIDFQNHSISEKDLPTIEKKMHEVALENHSMIMKKVTHDEAKRLFSY 151

Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
                   ++ +   +     G     LC G H+     I    ++  S           
Sbjct: 152 NPYKLILLEKHKEEDITVCHQGEFID-LCRGGHIPKLSLIKHFKLLKISGS--------- 201

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVS---QGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                        D K KSL      S   + ++   + ++ EE ++       +KL L
Sbjct: 202 ---------YFQGDAKNKSLTRIYGTSFFKKEDLGNYL-KLLEERKERDHKRLNKKLDL 250


>gi|315607978|ref|ZP_07882971.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
 gi|315250447|gb|EFU30443.1| threonine--tRNA ligase [Prevotella buccae ATCC 33574]
          Length = 650

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  I  +G  +DV     + I+  +   IE  + 
Sbjct: 69  HTFWHTSAHLLAEALKELYPGIQFGFGPAI-ENGFFYDVMPAGGQTISENDFPKIEAKML 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++ PVV R + + +A+    A   G  Y      + +E      ++      LC G
Sbjct: 128 ELAKKDEPVVRREVPKAEALEEFKAD--GQTYKCEHIDLDLEDGSISTYTQGNFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            H+ STG I  L I S   +     R +A 
Sbjct: 186 PHLISTGAIKALKITS---VAGAFWRGDAK 212


>gi|311113703|ref|YP_003984925.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
 gi|310945197|gb|ADP41491.1| threonine--tRNA ligase [Rothia dentocariosa ATCC 17931]
          Length = 678

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 32/193 (16%)

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D  ++ +  V            +     L    ++      +      + HSA H++
Sbjct: 29  LFADNAKIVVARVNG--------TLVDLSHKLSEGDTVEPVFIDEPDGLNVLRHSAAHVM 80

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+           G  IT DG  FD   ++P T  +LK IE ++  II        R+
Sbjct: 81  AQAVQEYRKDAKLGIGPYIT-DGFYFDFDVAEPFTPEDLKKIEKSMIKIIKSGQLFRRRV 139

Query: 654 MNREDAIASGAAALLGTKY-----------------------NDRVRVVSVEYEDGGVHS 690
           +  ++A+          +                         +     +V  + G V  
Sbjct: 140 VTHDEAVEEMKNEPYKLELLSLSQGPGSGADAAEGASVEVGAGEITIYDNVHPKTGEVLW 199

Query: 691 SALCGGTHVSSTG 703
           + LC G H+ +T 
Sbjct: 200 NDLCRGPHLPNTK 212


>gi|238063845|ref|ZP_04608554.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
 gi|237885656|gb|EEP74484.1| threonyl-tRNA synthetase [Micromonospora sp. ATCC 39149]
          Length = 676

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 32/166 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+  +        G  I  +G  +D    KP    +L  +E  + +I+ 
Sbjct: 75  LRHSTAHVLAQAVQDVFPEAKLGIGPPI-ENGFYYDFAVDKPFQPDDLAKLEKRMQEIVK 133

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKYND----------------RVRVVSVEYEDGG 687
                   R  + ++A A  AA     +  D                   V+ V   +  
Sbjct: 134 SGQRFRRRRFASLDEAKAELAAEPFKLELVDLKGDQEQGAVKGEGLDSSEVMEVGGGELT 193

Query: 688 VHS-----------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           ++            S LC G H+ +T  I    ++      A   R
Sbjct: 194 IYDNLDAKEEKVCWSDLCRGPHLPNTRLIGAFKLM---RSAAAYWR 236


>gi|313126275|ref|YP_004036545.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
 gi|312292640|gb|ADQ67100.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Halogeometricum
           borinquense DSM 11551]
          Length = 641

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 22/219 (10%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           E+V     G ++ V         E G  + D    IG G+       +    G+     +
Sbjct: 3   ELVVNLPDGSELSV---------EEGATVEDVAYEIGPGL------GEDTVAGVVDGELV 47

Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619
            +   +     +V+  D  +     + H+A H+   AL  +        G   T +G  +
Sbjct: 48  DKAAPVHDGAQVVIVTDQSDEYLRVLRHTAAHVFAQALQRLYPEAKLAIGPS-TDEGFYY 106

Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
           DVT +  + + +L++IED + +II ++LPV   + +REDA+             +     
Sbjct: 107 DVT-NVDLDADDLEAIEDEMEEIIEEDLPVERELRSREDALELYEENPYKRDILENEAAG 165

Query: 680 SVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             E   Y  G      LC G HV STG+I  + +++ SS
Sbjct: 166 DDELSFYVQGEFED--LCKGPHVESTGKIGAVELLNISS 202


>gi|300858607|ref|YP_003783590.1| threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|300686061|gb|ADK28983.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41]
 gi|302206319|gb|ADL10661.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231]
 gi|302330876|gb|ADL21070.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002]
 gi|308276561|gb|ADO26460.1| Threonyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19]
          Length = 689

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 37/189 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS TH+L  A+           G  I  +G  +D   ++P T  +LK IE  +  II 
Sbjct: 77  IRHSCTHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDVAEPFTPEDLKRIEKRMKKIIK 135

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKY-----------------------NDRVRVVS 680
           Q      R   + E+A      AL    Y                        D     +
Sbjct: 136 QGQKFERRTFASVEEASE----ALKNEPYKLELIRDKGNVDPDSDEATEVGAGDLTGYYN 191

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +    G V    LC G HV +T  I      S +   A   R     G ++ + L     
Sbjct: 192 LNPRTGEVDWYDLCRGPHVPTTKYIPAF---SLTRSSAAYWR-----GDQSLADLQRIYG 243

Query: 741 KLKSLASFL 749
                   L
Sbjct: 244 TAWESKEAL 252


>gi|332158887|ref|YP_004424166.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
 gi|331034350|gb|AEC52162.1| alanyl-tRNA synthetase [Pyrococcus sp. NA2]
          Length = 160

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
             H+A H++  A+  +LG       S  +  +     V  ++  T  E++ IE   N  +
Sbjct: 7   RTHTALHIVKGAVVKVLGEGAKWTASTYVKGNKGVLIVKFNRKPTEDEIREIERLANKKV 66

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +N+P+    ++RE+A       +    +     V  ++       +   C   H  +TG
Sbjct: 67  EENVPIKIYELSREEAEKRFGEDMYDL-FPVPEDVKILKVLVIDDWNVNACNKEHTKTTG 125

Query: 704 EIMLLYIVS 712
           E+  + I  
Sbjct: 126 EVGPIKIRK 134


>gi|282864200|ref|ZP_06273256.1| threonyl-tRNA synthetase [Streptomyces sp. ACTE]
 gi|282560687|gb|EFB66233.1| threonyl-tRNA synthetase [Streptomyces sp. ACTE]
          Length = 658

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    +P T  +LK++E  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KDGFYYDFDVERPFTPEDLKAVEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKY---NDRVRVVSVEYEDGGVHS------ 690
           +      R++  E A A          L+G K    +D    V V   +  ++       
Sbjct: 130 RGQRFSRRVVTDEAARAELADEPYKLELIGIKGSASSDDGADVEVGGGELTIYDNLDPKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GDLCWKDLCRGPHLPTTRFIPAFKLM---RNAAAYWR 223


>gi|126657277|ref|ZP_01728443.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
 gi|126621548|gb|EAZ92259.1| threonyl-tRNA synthetase [Cyanothece sp. CCY0110]
          Length = 607

 Score = 61.2 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 7/142 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+A+H++  A+  +        G   T  G  +D    +P T  +LK+I+  +  II
Sbjct: 28  RIRHTASHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTDKDLKAIKKEMIKII 86

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVS 700
            + LP+    ++ E+A        L   Y   +       +     G     LC G HV 
Sbjct: 87  KKKLPLTREEVSAEEAKKR--ITELQEPYKLEILEGLEPPITLYHLGDQWWDLCAGPHVE 144

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG++         S+     R
Sbjct: 145 TTGDLNP-KAFEIESVAGAYWR 165


>gi|271967410|ref|YP_003341606.1| threonyl-tRNA synthetase [Streptosporangium roseum DSM 43021]
 gi|270510585|gb|ACZ88863.1| threonyl-tRNA synthetase [Streptosporangium roseum DSM 43021]
          Length = 659

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 565 LRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           +     +  + +   + R +   HS  H++  A+  +        G  +  +G  +D   
Sbjct: 51  VAEGDEVEPVEVGSPDGRAIVR-HSTAHVMAQAVQELFPEAKLGIGPPVD-NGFYYDFDV 108

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYN----- 673
             P T  +LK +E  + +I+ Q      R ++ EDA+           L+G K       
Sbjct: 109 KNPFTPEDLKRVEKRMREIVKQGQIFSRRPVSDEDALEELAAEPYKLELIGLKGGAGAQA 168

Query: 674 ----------DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                     +     +++ + G +    LC G HV +T  I    ++          R
Sbjct: 169 DGADVEVGGAELTIYDNLDPKTGDLCWKDLCRGPHVPTTRSIPAFKLM---RSGGAYWR 224


>gi|262199320|ref|YP_003270529.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
 gi|262082667|gb|ACY18636.1| phosphoesterase DHHA1 [Haliangium ochraceum DSM 14365]
          Length = 617

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGISKEKKASVLIVVTEDL 846
             +IA V  +   I+  ++  L  +   LQ++++SG   +++   ++ KA++L  +++DL
Sbjct: 498 AEEIAGVALVVACIAGAEAAGLNEIARTLQERLRSGPAAIVLAGERDDKAALLCALSQDL 557

Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHM 874
           ++R  A D    +      G GGGR   
Sbjct: 558 VERDLAADEVLAAMLPFVEGRGGGRARF 585


>gi|119716597|ref|YP_923562.1| threonyl-tRNA synthetase [Nocardioides sp. JS614]
 gi|166225470|sp|A1SJ90|SYT_NOCSJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119537258|gb|ABL81875.1| Ser-tRNA(Thr) hydrolase [Nocardioides sp. JS614]
          Length = 668

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 67/225 (29%), Gaps = 40/225 (17%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +  + ID  +   +   HS  H++  A+  +        G  +  +G  +D  
Sbjct: 50  ELADGDQVEPVAIDSPDGHDILR-HSTAHVMAQAVQQLFPDAKLGIGPPV-ENGFYYDFD 107

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKYND--- 674
              P   A+L  IE  +  II +      R+    DAI           L+G K +    
Sbjct: 108 VDTPFNPADLDKIETAMRKIIKEGQRFSRRVTTDADAISELRDEPYKIELIGLKGSGAST 167

Query: 675 -------RVRVVSVEYEDGGVHS----------SALCGGTHVSSTGEIMLLYIVSESSIR 717
                      V V   +  ++           S LC G H+ +T  I    ++      
Sbjct: 168 GSTTEAVEGASVEVGAGELTIYDNIRRNGDVAWSDLCRGPHLPTTKRIPAFKLM---RTA 224

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           A   R     G      L             L       + R+EE
Sbjct: 225 AAYWR-----GNEKNKQLQRIYGTAWESKDAL----EEHLHRIEE 260


>gi|330791376|ref|XP_003283769.1| hypothetical protein DICPUDRAFT_85978 [Dictyostelium purpureum]
 gi|325086268|gb|EGC39660.1| hypothetical protein DICPUDRAFT_85978 [Dictyostelium purpureum]
          Length = 248

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS--AELKSIEDNVNDIIAQ 645
           SA H+L  A+  IL + ++ +  C      R  V + +        ++ IED  N II +
Sbjct: 11  SACHVLKGAIVKILNTPLTISVDCTNSKKGRISVEYDQADKPTAEIIQQIEDEANKIIKE 70

Query: 646 NLPVVTRIMNREDAIASGAAAL-----LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           NL      +NR++A     + L     +  K+     V S+   +    +   C  TH+ 
Sbjct: 71  NLEFKVCQINRKEAEEKYKSNLVNNTFIYDKFPVPESVTSLTLVELKDWNINCCPATHLK 130

Query: 701 STGEIMLLYIVSESSIRAGIRRIEA 725
           +TGEI  + I    + RA  + +E 
Sbjct: 131 TTGEIGSIKIAG-INHRANKKELEF 154


>gi|325298803|ref|YP_004258720.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
 gi|324318356|gb|ADY36247.1| threonyl-tRNA synthetase [Bacteroides salanitronis DSM 18170]
          Length = 647

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 18/191 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A G+      + R I      ++   D +   + +  H++ HLL  AL  +        G
Sbjct: 37  ACGVNGETIDLTRPINEDASVVLYKWDDEQ-GKHAFWHTSAHLLAEALQELYPGIQFGIG 95

Query: 610 SCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
             I  +G  +DV       I  ++L +IE  + ++ A+  P+V   + ++DA+       
Sbjct: 96  PAI-ENGFYYDVDPGDGVVIKESDLPAIEQKMIELAARKEPLVRANIAKDDALKMFGER- 153

Query: 668 LGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI------- 716
            G  Y   + +  +E      ++      LC G H+ ST  I  + ++S +         
Sbjct: 154 -GETYKCEL-ISELEDGHITTYTQGAFTDLCRGPHLPSTAPIKAIKLLSVAGAYWRGQED 211

Query: 717 RAGIRRIEAIT 727
           R  + RI  IT
Sbjct: 212 RKQMTRIYGIT 222


>gi|296139628|ref|YP_003646871.1| threonyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
 gi|296027762|gb|ADG78532.1| threonyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162]
          Length = 677

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 81/238 (34%), Gaps = 46/238 (19%)

Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
             V K  +G     + V       E ++    D        I HSA H+L  A+      
Sbjct: 30  VVVVKTTDGTLKDLSWVPETDTEVE-AVAANTDDGR---NVIRHSAAHVLAQAVQDGFPG 85

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NREDAIAS 662
                G  IT DG  +D   ++P T  +LK++E  +  II        R+  ++++A A 
Sbjct: 86  TKLGIGPYIT-DGFYYDFDVAEPFTPEDLKNLEKKMKQIIKAGQKFSRRVYASKDEARAE 144

Query: 663 GAAALLGTKYN----------DRVRVVSVEYEDGGVHSS-----------ALCGGTHVSS 701
               L G  Y           D   V+ V   +   + +            LC G HV +
Sbjct: 145 ----LAGEPYKLELIDDKGAADDSEVMEVGGAELTAYDNLNPRTGERIWGDLCRGPHVPT 200

Query: 702 TGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMGQDEKLKSLASFLK 750
           T  I  + +    S  A  R         RI       A      QDE L+ LA   K
Sbjct: 201 TKYIPAVKLTR--SSAAYWRGDQNNADLQRIYGT----AWESPEAQDEYLELLAEAEK 252


>gi|126658692|ref|ZP_01729837.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
 gi|126619954|gb|EAZ90678.1| Threonyl-tRNA synthetase, class IIa [Cyanothece sp. CCY0110]
          Length = 642

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 74/226 (32%), Gaps = 50/226 (22%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+  H++  A+  +        G   T  G  +D    +P    +LK I   +  II
Sbjct: 38  RIRHTCAHVMAMAVQILFPETKVTIGPT-TNTGFYYDFDRPEPFAPEDLKKITKQMRFII 96

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY----------NDRVRVVSVEYEDGG------ 687
             NLP++   + RE+  A      LG  Y           + +    +   DGG      
Sbjct: 97  KANLPIIREEITREEIKAE--IEQLGEPYKLEILDSIPAGETITRYYIGSPDGGRLPNVG 154

Query: 688 ---------------------VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                                V    LC G H++ TGEI      +  S+     R    
Sbjct: 155 EKLKGALPEPSLIKPVKIPATVSWWDLCAGPHINYTGEINP-NAFALESVAGAYWR---- 209

Query: 727 TGQRARSHLMG----QDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            G   ++ L        E  + L ++LK  +        ++ +E +
Sbjct: 210 -GDETKAQLQRIYGTAWETPEQLDAYLKQQEEAKRRDHRKLGKELK 254


>gi|307721910|ref|YP_003893050.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980003|gb|ADN10038.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 602

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 20/221 (9%)

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           K +G  +     +      E    + +D        + HS  HL+  A+ ++        
Sbjct: 7   KKDGEIIDTQTAKELGFEGEQ---IHLDNSPEALEVLRHSTAHLMAQAIKSLYPDAEFYV 63

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G  +  +G  +D   S  I   +LK IE  +     +   +    +  ++A        L
Sbjct: 64  GPVV-KEGFYYDFKTSAEIGEGDLKKIEKQMLSFAKKKYKIEKYEITMDEAKEKFKDDHL 122

Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
             +   R+   +V     G     LC G H+ + G I    +   S              
Sbjct: 123 KLEVMKRIPSDTVSIYKQGDF-EDLCRGPHLPNIGLIRYFKLTKISG------------- 168

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             A      ++E L  +       + ++   +E++ E  ++
Sbjct: 169 --AYLGGDSKNEMLTRIYGIAFADKESLKAHMEQLAEAEKR 207


>gi|260591627|ref|ZP_05857085.1| threonine--tRNA ligase [Prevotella veroralis F0319]
 gi|260536427|gb|EEX19044.1| threonine--tRNA ligase [Prevotella veroralis F0319]
          Length = 649

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +  +G  +DV   K   I+  +   IE+ + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ENGFFYDVMPPKGQAISENDFPKIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  +N  VV   +++ +A+    A   G +Y        +E      ++      LC G
Sbjct: 128 ELAKKNEQVVRHDISKANAVKEFTAD--GQEYKVEHIEQDLEDGTISTYTQGSFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
            H+ STG I  + I S   +     R +A 
Sbjct: 186 PHLVSTGAIKAIKITS---VAGAFWRGDAK 212


>gi|170016922|ref|YP_001727841.1| threonyl-tRNA synthetase [Leuconostoc citreum KM20]
 gi|238688955|sp|B1MXZ5|SYT_LEUCK RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169803779|gb|ACA82397.1| Threonyl-tRNA synthetase [Leuconostoc citreum KM20]
          Length = 653

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 16/146 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIEDNVND 641
           + H+A+HLL  AL  I        G     D   +  T +     ++  +   IE  ++ 
Sbjct: 73  LRHAASHLLAQALKRIPKFANMHFGVGPFIDNGFYYDTDNGAGNQVSVEDFPEIEAMMHK 132

Query: 642 IIAQNLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           I+ ++LP+V+R + RE+A++  A      AL+     D    ++V+ +   +    L   
Sbjct: 133 IVKEDLPIVSREITREEALSMFAEDPYKIALISDLPEDEKITIAVQGDHIELDKGGL--- 189

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
             V STG I    + S   +     R
Sbjct: 190 --VPSTGWIKHFKLTS---VAGAYWR 210


>gi|323359943|ref|YP_004226339.1| threonyl-tRNA synthetase [Microbacterium testaceum StLB037]
 gi|323276314|dbj|BAJ76459.1| threonyl-tRNA synthetase [Microbacterium testaceum StLB037]
          Length = 666

 Score = 60.9 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 70/217 (32%), Gaps = 36/217 (16%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +  +  +  +TID  +   +   HS  H+L  A+  +        G  +T DG  +D  
Sbjct: 32  TVTADDEVEPVTIDSADGLSILR-HSTAHVLAQAVQRVKPQANLGIGPPVT-DGFYYDFQ 89

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG------------- 669
             +P T  +LK I+  +  I+ +N   V R++  ++A A  A                  
Sbjct: 90  VDEPFTPEDLKVIKKEMERIVRENQRFVRRVVTDDEARAELADEPFKLELIGLKGGASTG 149

Query: 670 -----------TKYNDRVRVVSVEYEDGGVHSSALCGGTHVS------STGEIMLLYIVS 712
                            + +      DG      LC G HV       +  ++  +    
Sbjct: 150 SATEIAEGASVEVGAGELTIYDNVTRDGETAWKDLCRGPHVPGTRLIGNGWDLTRIAGAY 209

Query: 713 ESSIRAG--IRRIEAITGQRARSHLMGQDEKLKSLAS 747
                    ++RI   T    +  L     +L+  A 
Sbjct: 210 WRGSEKNPQLQRIYG-TAWPTKDELRAYQHRLEEAAK 245


>gi|78186013|ref|YP_374056.1| threonyl-tRNA synthetase, class IIA [Chlorobium luteolum DSM 273]
 gi|78165915|gb|ABB23013.1| Ser-tRNA(Thr) hydrolase [Chlorobium luteolum DSM 273]
          Length = 677

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 31/209 (14%)

Query: 558 AIVERGILRTEMSLVLTI---DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                  +   M   L+I   D     ++   HSA+H++  A+  +        G  +  
Sbjct: 71  GKAADLSMPIGMDCTLSIITFDSAEGHEV-FWHSASHIMASAVEELFPGARFGAGPAV-E 128

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
            G  +D+  S      +L+SIE  + +I  ++ P+V   M RE AI         T   D
Sbjct: 129 QGFYYDIASSHRFNEDDLRSIEKKMLEIAGRDTPIVREEMTREAAIE-----FFKTVRRD 183

Query: 675 RVRVVSVE-----------YEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-------SI 716
             +V  +E           Y +GG     LC G H+ ST  +  + + + S       S 
Sbjct: 184 PYKVEILEDTLKNVPTVSLYHEGGFTD--LCTGPHLPSTSRLKAVRLFNISSSFWRGDSS 241

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSL 745
           R  ++RI  I    +   L    E+L+  
Sbjct: 242 RESMQRIYGIA-FPSEKLLKEHLERLEEA 269


>gi|303237224|ref|ZP_07323794.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
 gi|302482611|gb|EFL45636.1| threonine--tRNA ligase [Prevotella disiens FB035-09AN]
          Length = 649

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVN 640
            +  HS+ HLL  AL  +        G  I  +G  +DV     + I+  +   IE  + 
Sbjct: 69  HTFWHSSAHLLAEALKELYPGIQFGFGPAI-ENGFFYDVQTADGQAISENDFPKIEAKML 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++ P+V R +++ DA+    A   G +Y     V  +E      +S      LC G
Sbjct: 128 ELAKKDSPIVRRDVSKADAVKEFTAD--GQEYKVEHIVEDLEDGTISTYSQGNFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            H++S      +  V  +S+     R +A + Q  R +
Sbjct: 186 PHLTS---TGAIKAVKLTSVAGAFWRGDANSNQLTRIY 220


>gi|38233973|ref|NP_939740.1| threonyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129]
 gi|73919783|sp|Q6NGW2|SYT_CORDI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|38200235|emb|CAE49919.1| threonyl-tRNA synthetase [Corynebacterium diphtheriae]
          Length = 687

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 30/192 (15%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           +  I HS TH+L  A+           G  I  +G  +D   ++P T  +L+ +E  +  
Sbjct: 74  RTVIRHSCTHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDVAEPFTPEDLQKLEKRMKK 132

Query: 642 IIAQNLP----VVTRIMNREDAIAS--GAAALLGTKY--------------NDRVRVVSV 681
           I+ Q       +   +   E+A+ +      L+  K                D     +V
Sbjct: 133 IVKQGQKFERRIFASVAEAEEALKNEPYKLELIRDKGNVDPGSDEATEIGAGDLTGYYNV 192

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRAR 732
               G V    LC G HV +T  I    +   S+         AG++RI       + A 
Sbjct: 193 NPRTGEVDWYDLCRGPHVPTTKYIPAFALTRSSAAYWRGDQSLAGLQRIYGTAWESKEAL 252

Query: 733 SHLMGQDEKLKS 744
                   + + 
Sbjct: 253 EEYQLMMAEAEK 264


>gi|282858709|ref|ZP_06267863.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
 gi|282588513|gb|EFB93664.1| threonine--tRNA ligase [Prevotella bivia JCVIHMP010]
          Length = 649

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 12/169 (7%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-- 621
            +  + ++ L        + S  HS+ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PINEDATIALYRFEDEEGKHSFWHSSAHLLAEALKELYPGIQFGFGPAI-ENGFFYDVQT 108

Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
               PI+  +   IE  + ++  ++ P++ R + + +AI    A   G  Y        +
Sbjct: 109 ADGTPISENDFPKIEAKMLELAKKDSPIIRREVPKAEAIKEFTAD--GQTYKVEHIDQDL 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           E      +S      LC G H+       ++  V  +S+     R +A 
Sbjct: 167 EDGTISTYSQGNFTDLCRGPHL---VSTGIIKAVKLTSVAGAFWRGDAK 212


>gi|62185526|ref|YP_220311.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
 gi|73919780|sp|Q5L4T1|SYT_CHLAB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|62148593|emb|CAH64365.1| threonyl-tRNA synthetase [Chlamydophila abortus S26/3]
          Length = 635

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 24/232 (10%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSL--VLTIDYQNRRQLSINHSATHLLHHALST 599
           +I +    A  +           L    +L  V   D + R      H++ H+L  A+  
Sbjct: 25  KIKNSHYFAGVVINDQIKDLSTTLNEGDTLRFVTFTDPEGRE--IFLHTSAHILAQAILR 82

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-RED 658
           +    +   G  I   G  +D   +  I+  +   IE+ +  I  +   V  +  N + +
Sbjct: 83  LWPDAIPTIGPVIDQ-GFYYDFA-NLSISEDDFLMIENMMGQIAEEKFAVQKKTFNSKHE 140

Query: 659 AIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717
           A+   A      +   +     S+     G     LC G H+ STG +    ++  S   
Sbjct: 141 ALEEFARNPFKVELIKELPEGESITAYSQGEF-MDLCRGPHLPSTGPVKAFKLLRTS--- 196

Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
                        A      Q E L  +      +   +   + ++ E  ++
Sbjct: 197 ------------AAYWRGDPQRESLVRIYGVAFPTTKELKEHLHQLKEAKKR 236


>gi|237785631|ref|YP_002906336.1| threonyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758543|gb|ACR17793.1| Threonyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 663

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 63/211 (29%), Gaps = 38/211 (18%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626
            +  +   I   +  +  I HS TH++  A+           G  I  DG  +D      
Sbjct: 33  EDTEVTTVIAASDEGRAVIRHSCTHVMAQAVQAEFPGTKLGIGPAI-ADGFYYDFGTDHA 91

Query: 627 ITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKY------------- 672
            T  +LK IE  +  II            + +DA      AL    Y             
Sbjct: 92  FTPDDLKRIEKRMKKIIKSGQRFERVVWKSLDDARE----ALKDEPYKLELIDDKSKGTV 147

Query: 673 ----------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS------- 715
                      +     +V    G V    LC G HV +T  I    +   S+       
Sbjct: 148 LDEDADLDTAGELTAYNNVNPRTGEVEWFDLCRGPHVPTTKYIAAFALQRSSAAYWRGDQ 207

Query: 716 IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
              G++RI       + A      + E+ + 
Sbjct: 208 NNDGMQRIYGTAFESKEALQEYQQRMEEAER 238


>gi|120403545|ref|YP_953374.1| threonyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|166225469|sp|A1T868|SYT_MYCVP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119956363|gb|ABM13368.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 691

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 33/192 (17%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+  +        G  IT DG  +D   ++P T  +L+++E  +  I+ 
Sbjct: 76  IRHSAAHVLAQAVQALFPDAKLGIGPPIT-DGFYYDFEVAEPFTPEDLEALEKRMRQIVK 134

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSS---- 691
                  R+         E A       L+  K  D      ++ +  ++   + +    
Sbjct: 135 DGQLFSRRVFESKDEAREELANEPYKLELIDDKSGDLESSDEIMEIGGDELTAYDNLNPR 194

Query: 692 -------ALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHL 735
                   LC G H+ +T  I    +    S  A  R         RI   T   ++  L
Sbjct: 195 TRERVWGDLCRGPHIPTTRYIPAFKLTR--SSAAYWRGDQNNASLQRIYG-TAWESQEAL 251

Query: 736 MGQDEKLKSLAS 747
               E ++    
Sbjct: 252 DRHLELIEEAQK 263


>gi|326382111|ref|ZP_08203803.1| threonyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198841|gb|EGD56023.1| threonyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 700

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 27/171 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  IT DG  +D   + P T  +LK++E  +  II 
Sbjct: 85  IRHSCAHVLAQAVQELNPQAHLGIGPPIT-DGFYYDFEVADPFTPEDLKALEKQMKKIIK 143

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSS------ 691
                  R+         E A       L+  K   D   ++ V   +   + +      
Sbjct: 144 SGQRFSRRVYESKDAARDELANEPFKLELIDDKGAADDAEIMEVGGAELTAYDNLNPRTG 203

Query: 692 -----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
                 LC G HV +T  I    +       A   R     G ++ + L  
Sbjct: 204 ERVWGDLCRGPHVPTTKYIAAFKLT---RSSAAYWR-----GDQSLADLQR 246


>gi|260771391|ref|ZP_05880316.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972]
 gi|260613517|gb|EEX38711.1| predicted metal-dependent hydrolase [Vibrio furnissii CIP 102972]
          Length = 294

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 48/247 (19%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
            K+ VV   TPF+  +        D G          + D                    
Sbjct: 29  DKLYVVTHSTPFHPVSHIWPDHPADQGTLHSAHGTFAVVDCQVGSIELATGHLSVGQAIP 88

Query: 546 VQKKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-- 600
           V++ A G   + VH    E   +    ++ LT++   +++LS  HSA HL + AL+ +  
Sbjct: 89  VKRDAPGWVFVVVHVLEAEVNAVALGETVTLTVNAAYQQRLSRGHSAGHLAYLALNKVLA 148

Query: 601 ------------LGSHVSQNG-----SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
                          H   N      S +T D         K +    L S +D +ND+ 
Sbjct: 149 KGYWRKDADRKDPHGHCDFNSYAQVTSFVTEDRCVDTYRLGKTLRKRGLNS-DDMLNDLA 207

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +    V  ++++     +    +  G    D        +E  G  +   CGGTH +S  
Sbjct: 208 SIEKQVNQQLVDWLALRSPMMVSRDGDALTDSRYWECDLHE--GEIARIPCGGTHATSLC 265

Query: 704 EIMLLYI 710
           +   + +
Sbjct: 266 DYQSIVV 272


>gi|118471368|ref|YP_887250.1| threonyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
 gi|166225464|sp|A0QWG2|SYT_MYCS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118172655|gb|ABK73551.1| threonyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155]
          Length = 684

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 63/187 (33%), Gaps = 31/187 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  IT DG  +D    +P T  +L+ +E  +  II 
Sbjct: 76  IRHSCAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVEEPFTPEDLERLEKRMRQIIK 134

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
                  R+         E A       L+  K  D   V+ V  ++   + +       
Sbjct: 135 DGQLFSRRVYESKDAAREELANEPYKLELVDDKSGDPD-VMEVGGDELTAYDNLNARTKE 193

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMGQ 738
                LC G H+ +T  I    +    S  A  R         RI   T   ++  L   
Sbjct: 194 RVWGDLCRGPHIPTTRYIPAFKLTR--SSAAYWRGDQNNASLQRIYG-TAWESQEALDRH 250

Query: 739 DEKLKSL 745
            E ++  
Sbjct: 251 LELIEEA 257


>gi|86143057|ref|ZP_01061479.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85830502|gb|EAQ48961.1| threonyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 648

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 14/203 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E+G    D   +I  G+   +   +   + I +   + E G L     ++ T +    ++
Sbjct: 15  ESGTTPFDVANSISAGLARNVISAKYNNKTIEITTPLTEDGAL-----VLFTWNDDEGKK 69

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  HS+ H+L  AL  +        G  I   G  +DV       S  + K IE+ + +
Sbjct: 70  -AFWHSSAHILAQALEELYPGVKLTIGPAID-KGFYYDVDLGDRSLSENDFKKIENKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           I         R +++ DA+            +  + +   ++ + D    +  LC G H+
Sbjct: 128 IARGKHEFSMRSVSKADALEMYKKQDNPYKVELIENLEDGTITFCDHDTFTD-LCRGGHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +      +  V   S+     R
Sbjct: 187 PN---TGFVKAVKLMSVAGAYWR 206


>gi|269965175|ref|ZP_06179309.1| hypothetical protein VMC_07390 [Vibrio alginolyticus 40B]
 gi|269830161|gb|EEZ84388.1| hypothetical protein VMC_07390 [Vibrio alginolyticus 40B]
          Length = 291

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 82/246 (33%), Gaps = 47/246 (19%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   V+ D TPF+  +        D G    +G    + D                    
Sbjct: 29  EVTYVITDVTPFHPVSHIWPDHPADKGTLKVNGAEHDVVDCQVGAVEQESGALYVGSDIP 88

Query: 546 VQKKAEGIF--VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++ AEG    V H       L T+  + L +D   +R LS  H+A HL + AL+ +L  
Sbjct: 89  VKRDAEGWVFVVVHVFSRTESLVTDDLVTLAVDKDYQRALSRGHTAGHLAYLALNKVLAE 148

Query: 604 HVSQN-------------------GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
              +                     S +TPD         K +    L S  D +ND+ A
Sbjct: 149 DYWRKDADRKDPHGYYDFNSYAQVTSYVTPDKCLDTYRLGKTLRKRGLNSA-DMLNDLQA 207

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               V ++++      A       G +  D         E  G  +   CGGTH S   E
Sbjct: 208 IAKKVNSQLVEWLRRDAMITMECHGDRLTDSRYWKCDLGE--GQLAVIPCGGTHASHLNE 265

Query: 705 IMLLYI 710
              + +
Sbjct: 266 FAFIQV 271


>gi|329961279|ref|ZP_08299445.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
 gi|328531944|gb|EGF58761.1| threonine--tRNA ligase [Bacteroides fluxus YIT 12057]
          Length = 646

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   +      +L  IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEATIKEADLPVIEKKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           ++A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LVAKKEAVVRQDIAKADALKMFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +   I  + + S +         R  + RI  IT
Sbjct: 185 HLMTIAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|319902630|ref|YP_004162358.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
 gi|319417661|gb|ADV44772.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Bacteroides
           helcogenes P 36-108]
          Length = 646

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   +      +L  IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEATIKEADLPVIEKKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           ++A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LVARKEAVVRKDIAKADALKMFGGR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + + S +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLTSVAGAYWRGQEDRKMMTRIYGIT 221


>gi|296129629|ref|YP_003636879.1| threonyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
 gi|296021444|gb|ADG74680.1| threonyl-tRNA synthetase [Cellulomonas flavigena DSM 20109]
          Length = 670

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L    ++   TID  +   +   HSA H+L  A+  I        G  IT DG  +D  
Sbjct: 47  PLAAGTTVEAVTIDSPDGLAVLR-HSAAHVLAQAVQEINPKARLGIGPPIT-DGFYYDFD 104

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA--------AALLGTKYND 674
              P T  +L +IE  +  I+ +        +    A    A          L G   + 
Sbjct: 105 VETPFTPEDLTAIEKVMGRIVKEGQTFRRWEVTEAQAREELAAEPYKLELIGLKGEAGDT 164

Query: 675 RVRVVSVEYEDGGVH--------------SSALCGGTHVSSTGEIM 706
               V V      ++                 LC G H+ ST  I 
Sbjct: 165 DGASVEVGLGGLSIYQNVRGAGRESEAVVWQDLCRGPHLPSTRLIG 210


>gi|269986430|gb|EEZ92716.1| threonyl-tRNA synthetase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 635

 Score = 60.9 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A+  +    V   G  I  +G  +D+ ++  +   +L+ IE  + +++ + 
Sbjct: 69  HSSAHILATAVKRLYPDAVLGIGPAID-EGFYYDI-YNLKVGDNDLEKIEKEMENVVKEK 126

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L    + +++E+A+          +  + V      Y +G  +   LC G H+ ST  + 
Sbjct: 127 LKFERKDISKEEAVELLKNNKFKLEIIEGVNGNLSIYRNGEFYD--LCRGPHIPSTEYLG 184

Query: 707 LLYIVSESS 715
            + ++  S 
Sbjct: 185 AVKLLKVSG 193


>gi|299135910|ref|ZP_07029094.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298602034|gb|EFI58188.1| threonyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 680

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 88/239 (36%), Gaps = 33/239 (13%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HSA H++  A+  +       +G   T +G  +DV    P T A+L SIE  + +++A+
Sbjct: 106 RHSAAHVMATAILELFPETKLGHGPA-TDNGFFYDVYREVPFTEADLASIEQKMAEVVAR 164

Query: 646 NLPVVTRIMNRED------AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +   V     RE       A           ++      +S+ Y++G       C G HV
Sbjct: 165 DEKFVRVEEPREKGLTDYAAQGEFMKVHFIERFTKPGDEISL-YKNGNFTD--FCRGPHV 221

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  +    ++S             I G  A      ++++L+ +      +Q ++   
Sbjct: 222 PSTSRVKAFKVMS-------------IAG--AYWLGDEKNQQLQRIYGTAFFNQKDLDAH 266

Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
            + + EE +        R  ++  + L    I +V     I        ++  M+   +
Sbjct: 267 FKHL-EEIKA-------RDHRVLGKQLDLFSIQEVAGAGLIFWHPKGGLIRKTMEDWMR 317


>gi|284929344|ref|YP_003421866.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
 gi|284809788|gb|ADB95485.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [cyanobacterium
           UCYN-A]
          Length = 608

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 23/197 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H+A+H++  A+  +        G   T  G  +D   SKP    +LK+I+  +  II 
Sbjct: 30  IRHTASHVMAMAVQRLFPQAKVTIGPW-TETGFYYDFDISKPFLDQDLKNIKKEMIKIIK 88

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV---VSVEYEDGGVHSSALCGGTHVSS 701
             LPV+   +  E+A      A +   Y   +       +     G     LC G H+ S
Sbjct: 89  SKLPVIKEEITLEEAKKR--IAQIQEPYKLEILENLQPPITLYHLGSEWWDLCSGPHLES 146

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG--- 758
           T  +         S+     R     G   ++ L                +   +V    
Sbjct: 147 TANLHP-KAFEIESVAGAYWR-----GDETKAQLQRIYGTAWE-------TPAQLVEYKK 193

Query: 759 -RVEEIWEEYRKLQLIH 774
            + E +  ++RKL    
Sbjct: 194 RKEEALKRDHRKLGKEL 210


>gi|65319683|ref|ZP_00392642.1| COG0441: Threonyl-tRNA synthetase [Bacillus anthracis str. A2012]
          Length = 154

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSL-VLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G         R  +     + ++TID     +++  HSA H+L  A+  + G  +
Sbjct: 37  KKAVAGNVNDELYDLRRNIEENAEVEIITIDSNEGVEIAR-HSAAHILAQAVKRLYGD-I 94

Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           +     +  +G  +D+     +   +L+ IE  +  II +N+ V    ++RE+A    
Sbjct: 95  NLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKVERVEVSREEAAKLF 152


>gi|46108732|ref|XP_381424.1| hypothetical protein FG01248.1 [Gibberella zeae PH-1]
          Length = 745

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH--SKPITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G ++        P G  +D+ +   + +T  + K++E   N I+ 
Sbjct: 153 HSSAHILGEAAERRFGCYLCNGPPTEDPPGFYYDMANMGEQSVTEEDKKALEQLSNSIVK 212

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           Q  P     M +E+ +     +    KY  + RV   +     V+       LC G HV 
Sbjct: 213 QKQPFERLEMTKEELLEMFEYSEYK-KYFIQQRV--PDGTKSTVYRCGPLIDLCRGPHVP 269

Query: 701 STGEIMLLYIVSESS 715
           +TG I    ++  S+
Sbjct: 270 TTGNIKAFSVLKNSA 284


>gi|145219006|ref|YP_001129715.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase
           [Prosthecochloris vibrioformis DSM 265]
 gi|189083618|sp|A4SCK4|SYT_PROVI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145205170|gb|ABP36213.1| Ser-tRNA(Thr) hydrolase [Chlorobium phaeovibrioides DSM 265]
          Length = 666

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 13/180 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA+H++ HA+  +        G  I   G  +D+      T  +L++IE+ +  I  ++
Sbjct: 82  HSASHIMAHAIEELFPGSKFGAGPAI-EQGFYYDIASEHRFTEEDLRAIEERMLLIAGRD 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
           +P+V   M R  AI             + +     E E   ++       LC G H+ ST
Sbjct: 141 IPIVREEMPRIQAIEYFRTVREDPYKVEILTDTLKETETVSLYHEGGFTDLCSGPHLFST 200

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
             +  + +    +I A   R     G ++R  +             LK     +    + 
Sbjct: 201 AALKAVKLF---NISASYWR-----GDQSRESMQRIYGIAFPTEKLLKAHLSALEEAKKR 252


>gi|254462954|ref|ZP_05076370.1| threonyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206679543|gb|EDZ44030.1| threonyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 643

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 8/141 (5%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H   H++  A+  I        G  I  DG  +D    +P T  +L  IE  + +II  
Sbjct: 75  RHDLAHIMARAVQEIWPDVKVTIGPVI-KDGWYYDFDRQEPFTPEDLSVIEKKMKEIINA 133

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSS 701
              V T + +R  AI           Y   +       E            +C G H+  
Sbjct: 134 RDAVRTEVWDRARAIKHYEDN--NEPYKVELIDAIPGDEPLRMYWHGDWQDMCRGPHLQH 191

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG++         S+     R
Sbjct: 192 TGQVPG-DSWKLMSVAGAYWR 211


>gi|227488772|ref|ZP_03919088.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542231|ref|ZP_03972280.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091194|gb|EEI26506.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182060|gb|EEI63032.1| threonine--tRNA ligase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 689

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 34/205 (16%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +++   D        I HSATH++  A+           G  +  +G  +D    +  T 
Sbjct: 67  TVIAASDEGR---GVIRHSATHVMAQAVQAEFPGTKLGIGPAV-ENGFYYDFGTERSFTP 122

Query: 630 AELKSIEDNVNDIIAQNLPVVTR-IMNRED-----AIASGAAALLGTK------------ 671
            +LK IE  +  II            + ++     A       L+  K            
Sbjct: 123 EDLKKIEKRMKKIIKTGQRFERFAWESLDEARTAMAEEPYKLELIEDKSKGTVLDEAADV 182

Query: 672 --YNDRVRVVSVEYEDGGVHSSALCGGT-HVSSTGEIMLLYIVSESS-------IRAGIR 721
             + +     +V           LC G  HV +T  I    ++  S+        R G++
Sbjct: 183 DAHGELTGYRNVNPRTNETEWFDLCRGPAHVPTTRYIPAFKLLRSSAAYWKGDQSRDGMQ 242

Query: 722 RIEAIT--GQRARSHLMGQDEKLKS 744
           RI       + A    +   E+ + 
Sbjct: 243 RIYGTAWESKEALDDYLTMLEEAEK 267


>gi|153838553|ref|ZP_01991220.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149748068|gb|EDM58927.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 317

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 65/255 (25%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   VV D TPF+  +        D G  + +  + ++ D                    
Sbjct: 53  EVTYVVTDVTPFHPVSHIWPDHPADKGILVFNDQQFEVIDCQVGAIEVATGELFVGAAIP 112

Query: 546 VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  EG    V H +     L     + L +D + ++ LS  HSA HL + AL+ +L +
Sbjct: 113 VKRDTEGWLFVVVHVLALVDTLSQGTRVTLKVDKEYQQALSRGHSAGHLAYLALNKVLAA 172

Query: 604 HVS-------------------QNGSCITPDGLRFDVTHSKPITS---------AELKSI 635
                                 Q  S +TPD         K +           ++L+ I
Sbjct: 173 SYWRKDADRKDPHGNYDFNSYAQEASFVTPDKCLDTYRLGKTLRKRGLNSAEMLSDLEKI 232

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN  +          + R+ AI        G    D         E  G  +   CG
Sbjct: 233 EGQVNAQLK-------FWLERDAAIIMDC---HGDNLTDSRYWKCDLGE--GELAVLPCG 280

Query: 696 GTHVSSTGEIMLLYI 710
           GTH     +   +++
Sbjct: 281 GTHAEHLSDFGSIHV 295


>gi|257459979|ref|ZP_05625083.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
 gi|257442420|gb|EEV17559.1| threonyl-tRNA synthetase [Campylobacter gracilis RM3268]
          Length = 607

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS----KPITSAELKSIEDNVN 640
           I HS  HLL  A+  +  S     G  I  DG  +D+  S    + +   +LK+IE  + 
Sbjct: 41  IRHSCAHLLAQAVRELYPSAKFFVGPAI-EDGFYYDMRVSKNGGEKLGEEDLKAIEKKMR 99

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +   NL +      +E      A   L  +   R+    V     G     +C G HV 
Sbjct: 100 ALAEANLEIKKIASTKEAVAKKYANDDLKQEVLKRIPEGPVSLYAQGEF-EDICRGPHVQ 158

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +           RI       A      + E L  +   +   + ++   +
Sbjct: 159 NTKFLKNFALT----------RI-----AGAYLGGDEKREMLTRIYGVVFADKDSLKKHL 203

Query: 761 EEIWEEYRK 769
             + EE +K
Sbjct: 204 T-MLEEAKK 211


>gi|221056250|ref|XP_002259263.1| threonine--trna ligase [Plasmodium knowlesi strain H]
 gi|193809334|emb|CAQ40036.1| threonine--trna ligase, putative [Plasmodium knowlesi strain H]
          Length = 888

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  +L  + G +++        +G  +D+      IT+ + K IE+  N +I Q
Sbjct: 262 HSSAHILGSSLEKLFGGYLTIGPPL--KEGFYYDIYLGDFSITNEDYKKIEEEFNKLIKQ 319

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
           N      I  +++ +          +    ++    E +   V+       LC G H+ S
Sbjct: 320 NAEFEKLICTKDEVMELFQYNPFKLEL---IKSKIPENKKTSVYKCGNFIDLCLGPHIKS 376

Query: 702 TGEIMLLYIVSESS 715
           TG+     ++  S+
Sbjct: 377 TGKAKAFKVLKNSA 390


>gi|242046134|ref|XP_002460938.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
 gi|241924315|gb|EER97459.1| hypothetical protein SORBIDRAFT_02g037830 [Sorghum bicolor]
          Length = 648

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H    G  I  +G  +D    +P+T  +LK I+  ++ II QNLP+V   ++RE+A    
Sbjct: 99  HTVTIGPWI-ENGFYYDFDM-EPLTDKDLKKIKKEMDRIIRQNLPLVREEVSREEAQKRI 156

Query: 664 AAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            A  L   Y     + ++   +     G     LC G HV STG+I     V   S+   
Sbjct: 157 EA--LNEPYKLEILESIKEEPITIYHIGEEWWDLCAGPHVESTGKINR-KAVELESVAGA 213

Query: 720 IRR 722
             R
Sbjct: 214 YWR 216


>gi|111115550|ref|YP_710168.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|216263396|ref|ZP_03435391.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
 gi|122956324|sp|Q0SMD6|SYT_BORAP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110890824|gb|ABH01992.1| threonyl-tRNA synthetase [Borrelia afzelii PKo]
 gi|215980240|gb|EEC21061.1| threonyl-tRNA synthetase [Borrelia afzelii ACA-1]
          Length = 581

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVRDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   +++ E A+                D    +S+      +    LC G HV +
Sbjct: 73  TGSSFEKELISVEQALEIFKDEPYKIDLIKNFDLQNEISIYKSHNFID---LCRGPHVDN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GNEKNTMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|172054921|ref|YP_001806248.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171701202|gb|ACB54182.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 644

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 86/277 (31%), Gaps = 60/277 (21%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+  H++  A+  +        G   T  G  +D    +P    +LK I   +  II
Sbjct: 40  RIRHTCAHVMAMAVQILFPETKVTIGPT-TNTGFYYDFDRPQPFAPEDLKKITKQMRFII 98

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE----------DGG------ 687
             NLP++   + RE+  A      LG  Y   +     E E          DGG      
Sbjct: 99  KANLPIIREEITREEIKAE--IEQLGEPYKLEILDSIPEGETITRYYIGSPDGGRLPDVG 156

Query: 688 ---------------------VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                                V    LC G H++ TGEI      +  S+     R    
Sbjct: 157 EKLKTALPEPSLIKPVKIPATVSWWDLCAGPHINYTGEINP-NAFALESVAGAYWR---- 211

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
            G   ++ L                +   +   +++  EE ++       RKL   ++  
Sbjct: 212 -GDETKAQLQRIYGTAWE-------TPEQLDAYLQQ-QEEAKR----RDHRKLGKELKLF 258

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
           S  + A    +         + L  + D  +K    G
Sbjct: 259 SIQENAGGGLVFWHPRGATMRYL--IEDYWRKAHLDG 293


>gi|289705559|ref|ZP_06501951.1| threonine--tRNA ligase [Micrococcus luteus SK58]
 gi|289557788|gb|EFD51087.1| threonine--tRNA ligase [Micrococcus luteus SK58]
          Length = 672

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 86/239 (35%), Gaps = 40/239 (16%)

Query: 564 ILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +    S+  ++D      L  + HS  H++  A+  +        G  IT DG  FD  
Sbjct: 49  EIPAGASVE-SVDITEPEGLEVLRHSTAHVMAQAVQQLRPGAKLGVGPYIT-DGFYFDFD 106

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTK------ 671
             +P T  +LK I   +  I+        R+++ E A A  A       LLG K      
Sbjct: 107 VDEPFTPEDLKQISSLMQKIVKSGQTFRRRVVDEETARAEMADEPYKLELLGKKDAADTA 166

Query: 672 ---------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      +     +V+ + G      LC G H+ ST             I  G   
Sbjct: 167 GEGASVEVGAGEITVYDNVDRKTGDAVWCDLCRGPHLPSTKL-----------IGNG--- 212

Query: 723 IEAITGQRARSHL-MGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKL 779
             A+T   A   L   ++++L+ +      S+ ++    E + E E R  + + A+  L
Sbjct: 213 -FALTRSAAAYWLGNEKNKQLQRIYGTAWASKDDLKAYQERLAEAERRDHRKLGAELDL 270


>gi|304382923|ref|ZP_07365405.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
 gi|304335948|gb|EFM02196.1| threonine--tRNA ligase [Prevotella marshii DSM 16973]
          Length = 654

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 16/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  I  +G  +DV       I+  +   IE+ + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAI-ENGFFYDVMPKDGVAISENDFPKIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++ PVV R +++ DA+        G +Y      + +       ++      LC G
Sbjct: 128 ELAKKDEPVVRRDISKADALKEFKED--GQEYKVEHIDLDLADGTISTYTQGAFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+ STG I  + I S +         R  + RI  IT
Sbjct: 186 PHLVSTGAIKAIKITSVAGAFWRGDAKREQMTRIYGIT 223


>gi|239917575|ref|YP_002957133.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Micrococcus
           luteus NCTC 2665]
 gi|281413939|ref|ZP_06245681.1| threonyl-tRNA synthetase [Micrococcus luteus NCTC 2665]
 gi|259516574|sp|C5CBI2|SYT_MICLC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239838782|gb|ACS30579.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Micrococcus
           luteus NCTC 2665]
          Length = 672

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 85/239 (35%), Gaps = 40/239 (16%)

Query: 564 ILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            +    S+  ++D      L  + HS  H++  A+  +        G  IT DG  FD  
Sbjct: 49  EIPAGASVE-SVDITEPEGLEVLRHSTAHVMAQAVQQLRPGAKLGIGPYIT-DGFYFDFD 106

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA-----AALLGTK------ 671
              P T  +LK I   +  I+        R+++ E A A  A       LLG K      
Sbjct: 107 VDDPFTPEDLKQISSLMQKIVKSGQAFRRRVVDEETARAEMADEPYKLELLGKKDAADTA 166

Query: 672 ---------YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                      +     +V+ + G      LC G H+ ST             I  G   
Sbjct: 167 GEGASVEVGAGEITIYDNVDRKTGDAVWCDLCRGPHLPSTKL-----------IGNG--- 212

Query: 723 IEAITGQRARSHL-MGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKL 779
             A+T   A   L   ++++L+ +      S+ ++    E + E E R  + + A+  L
Sbjct: 213 -FALTRSAAAYWLGNEKNKQLQRIYGTAWASKDDLKAYQERLAEAERRDHRKLGAELDL 270


>gi|51598972|ref|YP_073160.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
 gi|73919774|sp|Q660F3|SYT_BORGA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|51573543|gb|AAU07568.1| threonyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 582

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D     PIT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVCDLFPNTKIAIGPPI-KDGFYYDFEFKNPITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    +S+      +    LC G HV +
Sbjct: 73  TGSSFEKEIISLEQALEIFKDEPYKIDLIKNFDLQNEISIYKSHNFID---LCRGPHVDN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        + I     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTGIAGAYWR------------GNEKNTMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|328881181|emb|CCA54420.1| Threonyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 640

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D    KP T  +LK IE  + +I  
Sbjct: 53  LRHSTAHVMAQAVQELFPEAKLGIGPPV-RDGFYYDFDVEKPFTPEDLKVIEKKMQEIQK 111

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN---DRVRVVSVEYEDGGVHS------ 690
           +      R++  EDA A          L+G K +   D    V V   +  ++       
Sbjct: 112 RGQRFARRVVTDEDARAELADEPYKLELIGIKGSASTDDGANVEVGGGELTIYDNLDAKT 171

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 172 GELCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 205


>gi|172038860|ref|YP_001805361.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
 gi|171700314|gb|ACB53295.1| threonyl-tRNA synthetase [Cyanothece sp. ATCC 51142]
          Length = 608

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            I H+A+H++  A+  +        G   T  G  +D    +P T  +LK+I+  +  II
Sbjct: 29  RIRHTASHVMAMAVQKLFPKAQVTIGPW-TETGFYYDFDVPEPFTDKDLKAIKKEMIKII 87

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVS 700
            + LP++   ++ E+A        L   Y   +       +     G     LC G HV 
Sbjct: 88  KKKLPLIREEVSAEEAKKR--ITELQEPYKLEILEGLEPPITLYHLGDQWWDLCAGPHVE 145

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG++         S+     R
Sbjct: 146 TTGDLNP-KAFDIESVAGAYWR 166


>gi|330719257|ref|ZP_08313857.1| threonyl-tRNA synthetase [Leuconostoc fallax KCTC 3537]
          Length = 654

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVND 641
           + HSA+HLL  AL  I    ++         +G  +D  +     ++  +   IE  ++ 
Sbjct: 73  LRHSASHLLAQALKRIPKFSNIHFGVGPFIENGFYYDTDNGAGNQVSVEDFAEIEAMMHK 132

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           I+ ++LP+V+R + RE+A++         +  ND      +     G H   L  G  V 
Sbjct: 133 IVKEDLPIVSREITREEALSMFKDDPYKVELINDLPAEEKITIAVQGDHI-ELDKGGLVP 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  I    +VS   +     R
Sbjct: 192 STSWIKHFKLVS---VAGAYWR 210


>gi|260437371|ref|ZP_05791187.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
 gi|292810283|gb|EFF69488.1| threonine--tRNA ligase [Butyrivibrio crossotus DSM 2876]
          Length = 651

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+ +H+L  A+  +        G  I  +G  +D         A L ++E  +  II
Sbjct: 69  AYWHTTSHVLAEAVKRLYPDAKLTIGPSID-EGFYYDFDCP-AFDRAALDNLEAEMKKII 126

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +   +    + RE+AI        G  Y   +     E      +       LC G H+
Sbjct: 127 KEGASLERFELPREEAIKFMEDR--GEPYKVELINDLPEDAVISFYRQGDFVDLCAGPHL 184

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            S      +  V  ++  A   R
Sbjct: 185 MS---TKAIKAVKLTASSAAYWR 204


>gi|86145599|ref|ZP_01063929.1| hypothetical protein MED222_01557 [Vibrio sp. MED222]
 gi|85836570|gb|EAQ54696.1| hypothetical protein MED222_01557 [Vibrio sp. MED222]
          Length = 306

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 81/267 (30%), Gaps = 66/267 (24%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITDV-------- 546
             + V       K  ++ D TPF+  +        D G     G +  + D         
Sbjct: 34  NAKAVYVESDDSKTHLITDVTPFHPVSHIWPDHPADRGFVSVGGEQYIVEDCLVGAIEQS 93

Query: 547 ---------------QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                           +    + VH   V   ++     + L++D +++  LS  HSA H
Sbjct: 94  TGNLYIAADIPVKRDTEGWAFVVVHQLPVSASMINIGDEIELSVDKEHQASLSRGHSAGH 153

Query: 592 LLHHALSTILGSHVSQN-------------------GSCITPDGLRFDVTHSKPITS--- 629
           +   AL+ +L     +                     S +TP+         K +     
Sbjct: 154 IAFLALNKVLAESYWRKDADRKDPFGSYDFNSYAQVTSFVTPELCTDKYRLGKTLKKRGL 213

Query: 630 ------AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                   L  IE ++N +IA  L   T +             L G    D         
Sbjct: 214 NVADMLTNLDGIEADINQMIAGWLVESTLVT----------MRLEGEALTDSRYWE--WQ 261

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYI 710
            D     S  CGGTH+ +T E+  L +
Sbjct: 262 LDDETLVSIPCGGTHIDNTSELKALSV 288


>gi|257440090|ref|ZP_05615845.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
 gi|257197442|gb|EEU95726.1| threonine--tRNA ligase [Faecalibacterium prausnitzii A2-165]
          Length = 611

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 8/149 (5%)

Query: 573 LTIDY--QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITS 629
             +D   Q++    I H+A H++  A+  +        G   T +G  +DV      +T 
Sbjct: 23  GHVDECPQDQELHVIRHTAAHIMAQAIKRLYPEADFAFGPA-TENGFYYDVDLGDTKLTD 81

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVEYEDG 686
            +L +IE  +  I  +NL +   I+ R++A+                D        +   
Sbjct: 82  DDLANIEKEMRKICKENLAIKPFILPRDEAVKLMEERQEHYKIEHMADLADETEFSFFQQ 141

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G +   +C G H++ T  +    I  +S 
Sbjct: 142 GEYVD-MCIGPHLTYTKALKAFKITQQSG 169


>gi|300741607|ref|ZP_07071628.1| threonine--tRNA ligase [Rothia dentocariosa M567]
 gi|300380792|gb|EFJ77354.1| threonine--tRNA ligase [Rothia dentocariosa M567]
          Length = 677

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 32/193 (16%)

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              D +++ +  V            +     L    ++      +      + HSA H++
Sbjct: 29  LFADNVKIVVARVNG--------TLVDLSHKLSEGDTVEPVFIDEPDGLNVLRHSAAHVM 80

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             A+           G  IT DG  FD   ++P T  +LK IE ++  II        R+
Sbjct: 81  AQAVQEYRKDAKLGIGPYIT-DGFYFDFDVAEPFTPEDLKKIEKSMIKIIKSGQLFRRRV 139

Query: 654 MNREDAIASGAAALLGTKY-----------------------NDRVRVVSVEYEDGGVHS 690
           +   +A+          +                         +     +V  + G V  
Sbjct: 140 VTHAEAVEEMKNEPYKLELLSLSQGPGSGADAAEGASVEVGAGEITIYDNVHPKTGEVLW 199

Query: 691 SALCGGTHVSSTG 703
           + LC G H+ +T 
Sbjct: 200 NDLCRGPHLPNTK 212


>gi|289746410|ref|ZP_06505788.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|289686938|gb|EFD54426.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
          Length = 337

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HS  H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 73  VAANTDDGR---SVIRHSTAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 128

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 129 DLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGD-AEIMEVGGD 187

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 188 ELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSA 229


>gi|32477337|ref|NP_870331.1| threonyl-tRNA synthetase [Rhodopirellula baltica SH 1]
 gi|32447888|emb|CAD77406.1| threonyl-tRNA synthetase [Rhodopirellula baltica SH 1]
          Length = 830

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  I    VS      T  G  +D    + I+  +   IE  +  II 
Sbjct: 179 LRHSAAHVMARAIMRIY-KGVSLAFGPTTSGGFYYDFDMPEKISEDDFPKIEAEIKKIIK 237

Query: 645 QNLPVVTRIMNREDAIASG-------AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
              P    ++ R++A               + T   D+  V    Y  G      LC G 
Sbjct: 238 AKEPFERFVLERDEARKLCDDLDQDLKVEHIETGLGDQATVSF--YRQGEF--VDLCRGP 293

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           H+   G I  + ++S   +     + +A   Q  R +     +K K LAS+L
Sbjct: 294 HIPHAGMIKAIKLLS---VAGAYWKGDASGRQLQRVYGTAFFDK-KELASYL 341


>gi|254228661|ref|ZP_04922085.1| Alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262395113|ref|YP_003286967.1| putative metal-dependent hydrolase [Vibrio sp. Ex25]
 gi|151938840|gb|EDN57674.1| Alanyl-tRNA synthetase [Vibrio sp. Ex25]
 gi|262338707|gb|ACY52502.1| predicted metal-dependent hydrolase [Vibrio sp. Ex25]
          Length = 311

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 80/246 (32%), Gaps = 47/246 (19%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   V+ D TPF+  +        D G    +G    + D                    
Sbjct: 49  EVTYVITDVTPFHPVSHIWPDHPADKGTLKVNGAEHDVVDCQVGAVEQESGALYVGSDIP 108

Query: 546 VQKKAEGIF--VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++ AEG    V H +     L     ++L +D   +  LS  H+A HL + AL+ +L  
Sbjct: 109 VKRDAEGWVFVVVHVLSRTESLAINDLVILAVDKDYQNALSRGHTAGHLAYLALNKVLAE 168

Query: 604 HVSQN-------------------GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
              +                     S +TPD         K +    L S  D +ND+ A
Sbjct: 169 DYWRKDADRKDPHGYYDFNSYAQVTSYVTPDKCLDTYRLGKTLRKRGLNSA-DMLNDLQA 227

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               V  +++      A       G +  D         E  G  +   CGGTH S   E
Sbjct: 228 IAEKVNDQLVEWLQRDAMITMECHGDRLTDSRYWKCDLGE--GQLAVIPCGGTHASHLNE 285

Query: 705 IMLLYI 710
              + +
Sbjct: 286 FAFIQV 291


>gi|19074578|ref|NP_586084.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
 gi|74697534|sp|Q8SRH2|SYTC_ENCCU RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|19069220|emb|CAD25688.1| THREONYL tRNA SYNTHETASE [Encephalitozoon cuniculi GB-M1]
          Length = 640

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 19/171 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L +AL  +       +G  I  +G  +DV  + PI+S + + IE+ +  I+ +N
Sbjct: 75  HSSAHVLGNALVNLYPDAKLVHGPPI-EEGFFYDVDVTDPISSEDYEKIEEEMVKIMKKN 133

Query: 647 LPVVTRIMNREDAIASG----AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                 I ++E+ + +            K  D+   V   Y +G      +C G H+ ST
Sbjct: 134 YRFERVIKSKEELLEAYRDNPCKTHFIMKGVDKESSV---YRNGDFFD--MCLGPHIRST 188

Query: 703 GEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           G I  + ++  SS           ++RI AIT   +      + + E+ K 
Sbjct: 189 GVIKAVKVLKNSSAYFLNDPNLKSLQRIYAITFPSKGMMDEYLKRKEEAKE 239


>gi|298204586|emb|CBI23861.3| unnamed protein product [Vitis vinifera]
          Length = 83

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
            NEGR YVLR I+RRA+ Y   +L   E     LL  +   MG  +PEL Q ++ I
Sbjct: 26  DNEGREYVLRHILRRAVRYGSEVLKAQEGFFNSLLNIVVKVMGDVFPELKQYEVHI 81


>gi|215404566|ref|ZP_03416747.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
          Length = 342

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HS  H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 78  VAANTDDGR---SVIRHSTAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 133

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 134 DLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGD-AEIMEVGGD 192

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 193 ELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSA 234


>gi|189219987|ref|YP_001940627.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
 gi|189186845|gb|ACD84030.1| Threonyl-tRNA synthetase [Methylacidiphilum infernorum V4]
          Length = 611

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 76/205 (37%), Gaps = 28/205 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H+L  AL  I        G  +  +G  +DV     I+  +  +IE+ +  II+
Sbjct: 7   LRHSAAHVLAAALLEIWPEAQLAAGPPV-EEGFYYDVELDHRISPQDFPAIEERMKRIIS 65

Query: 645 QNLPVVTRIMNREDAIASGAAALLG--------TKYNDRVRVVSVEYEDGGVHSS----A 692
           +  P     ++RE+A   G    LG        ++Y   +     E E   ++ +     
Sbjct: 66  EKQPFKRIEVSREEARQLGLKGRLGALSERKIPSRYKLDILESIPENEPITLYQNGSFID 125

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LC G HV  TG I    +   SS               A      ++ +L+ +      +
Sbjct: 126 LCAGPHVEDTGSIKSFKLTHVSS---------------AYYKGDEKNPQLQRIYGTAFFT 170

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKR 777
              +   ++++ +  ++      K 
Sbjct: 171 AKELEDHLKQLEQAKKRDHRKIGKE 195


>gi|315180971|gb|ADT87885.1| Predicted metal-dependent hydrolase [Vibrio furnissii NCTC 11218]
          Length = 294

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 48/247 (19%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
            K+ VV   TPF+  +        D G    +     + D                    
Sbjct: 29  DKLYVVTHSTPFHPVSHIWPDHPADQGTLHSEHGAFAVVDCQVGAIELATGHLSVGQAIP 88

Query: 546 VQKKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-- 600
           V++ A G   + VH    E   +    ++ LT++   +++LS  HSA HL + AL+ +  
Sbjct: 89  VKRDAPGWVFVVVHVLEAEVNAVALGEAVTLTVNAAYQQRLSRGHSAGHLAYLALNKVLA 148

Query: 601 ------------LGSHVSQNG-----SCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
                          H   N      S +T D         K +    L S +D +ND+ 
Sbjct: 149 KGYWRKDADRKDPHGHCDFNSYAQVTSFVTEDRCVDTYRLGKTLRKRGLNS-DDMLNDLA 207

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +    V  ++++     +    +  G    D        +E  G  +   CGGTH +S  
Sbjct: 208 SIEKQVNQQLVDWLALRSPMMVSRDGDALTDSRYWECDLHE--GEIARIPCGGTHATSLR 265

Query: 704 EIMLLYI 710
           +   + +
Sbjct: 266 DYQSIVV 272


>gi|240170657|ref|ZP_04749316.1| threonyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478]
          Length = 697

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 31/187 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  IT DG  +D   ++P T  +L ++E  +  I+ 
Sbjct: 89  IRHSTAHVLAQAVQELFPHAKLGIGPPIT-DGFYYDFDVAEPFTPEDLAALEKRMRQIVK 147

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
           +      R+         E A       L+  K  D   V+ V  ++   + +       
Sbjct: 148 EGQLFDRRVYESKDQARAELANEPYKLELVDDKSGDPD-VMEVGGDELTAYDNLNPRTRQ 206

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMGQ 738
                LC G H+ +T  I    +    S  A  R         RI   T   ++  L   
Sbjct: 207 RVWGDLCRGPHIPTTKHIPAFKLTR--SSAAYWRGDQRNASLQRIYG-TAWESQEALDRH 263

Query: 739 DEKLKSL 745
            E ++  
Sbjct: 264 LELIEEA 270


>gi|300726434|ref|ZP_07059882.1| threonine--tRNA ligase [Prevotella bryantii B14]
 gi|299776282|gb|EFI72844.1| threonine--tRNA ligase [Prevotella bryantii B14]
          Length = 654

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 12/169 (7%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ L      + + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PITKDAAVELYKFEDEQGKHTFWHTSAHLLAEALQELYPGIQFGFGPAI-ENGFFYDVMP 108

Query: 624 SKPITSAE--LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            K +T +E     IE  + ++  ++  VV + + + DA+    A   G  Y      + +
Sbjct: 109 PKGVTISENDFPKIEAKMKELAKKDEAVVRKEIAKADALKEFKAD--GQDYKCEHIDLDL 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
                  ++      LC G H+ STG+I  + I S   +     R +A 
Sbjct: 167 ADGSITTYTQGNFTDLCKGPHLVSTGDIKAVKITS---VAGAFWRGDAK 212


>gi|88657649|ref|YP_506841.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|123750088|sp|Q2GI92|SYT_EHRCR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|88599106|gb|ABD44575.1| threonyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 633

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 17/180 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           V+TI+ +   ++   H   H++  A+  +        G  I  DG  +D   +   +S +
Sbjct: 59  VITINSEEGLEIIR-HDTAHIMAQAVKEMFPDVQITIGPTI-KDGFYYDFATNHNFSSDD 116

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L+ IE  + +II +N   +  + +RE+AI   ++  +G  Y  ++       E+  V+  
Sbjct: 117 LEIIEKKMIEIINKNESFIREVWSREEAIKFFSS--IGEDYKVKIISNIPSNENITVYKQ 174

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESSI----RAGIRRIEAITGQRARSHLMGQDEKLK 743
                LC G H  ST       +   S       +   R+     QR        +E+LK
Sbjct: 175 GSFTDLCRGPHAPSTKTSRAFKLTKVSGSYWQGNSNNERL-----QRIYGTAWRNEEELK 229


>gi|254232730|ref|ZP_04926057.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis C]
 gi|124601789|gb|EAY60799.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis C]
          Length = 692

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HS  H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 73  VAANTDDGR---SVIRHSTAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 128

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 129 DLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGD-AEIMEVGGD 187

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 188 ELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSA 229


>gi|85709956|ref|ZP_01041021.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
 gi|85688666|gb|EAQ28670.1| threonyl-tRNA synthetase [Erythrobacter sp. NAP1]
          Length = 671

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 89/245 (36%), Gaps = 32/245 (13%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI---DYQN 579
           EAG    D   AIG G+        K A    V   + +        + +  I   D + 
Sbjct: 18  EAGSTPADVAAAIGPGL-------AKAALAARVDGEVRDLNRPFEGDAELALITSKDEEE 70

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIE 636
             +L+  H   H+L  A+  +        G   T DG  +DV      +P +  +L +IE
Sbjct: 71  ALELAR-HDYAHVLAEAVQALYPGTQITFGPA-TDDGFYYDVMAPASREPFSMDDLPAIE 128

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG-----GVHSS 691
           + + +II  + P+   + +R+  I    +   G  +         E E+      G    
Sbjct: 129 EKMREIIKADKPLRREVWSRQQLIDKWES--EGESFKAEWAKELPENEELTVYWSGDDWL 186

Query: 692 ALCGGTHVSSTG--EIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKL 742
            +C G H++STG  +     ++  +          A + RI   TG   +  L     +L
Sbjct: 187 DMCRGPHLASTGKLDPQAFKLMRVAGAYWRGDQRNAQLTRIYG-TGWLNKKQLNAHLHRL 245

Query: 743 KSLAS 747
           +  A 
Sbjct: 246 EEAAK 250


>gi|219685509|ref|ZP_03540326.1| threonine--tRNA ligase [Borrelia garinii Far04]
 gi|219672908|gb|EED29930.1| threonine--tRNA ligase [Borrelia garinii Far04]
          Length = 581

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVCDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    +S+      +    LC G HV +
Sbjct: 73  TGSSFEKEIISLEQALEIFKDEPYKIDLIKNFDLQNEISIYKSHNFID---LCRGPHVDN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        + I     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTGIAGAYWR------------GNEKNTMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRNHRKLGKELDL 195


>gi|168012416|ref|XP_001758898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690035|gb|EDQ76404.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 613

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 98/255 (38%), Gaps = 28/255 (10%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +VL  +  + + L I H++ H+L  A+  +        G  I   G  +D    +P T  
Sbjct: 30  IVLPTNESSEKLLKIRHTSAHVLAMAVQKLFPDAQVTIGPWI-EKGFYYDFDKEEPFTET 88

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDG 686
           +LK I+  ++ II++NLP+    + +E+A        +   Y     + ++   +     
Sbjct: 89  DLKKIKKEMDRIISRNLPLTREEVAKEEAEKR--IKAINEPYKLEILEGIKTEPITIYKI 146

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
           G     LC G H+  TG++    I            +E + G  A      + + L+ + 
Sbjct: 147 GEEWWDLCAGPHLERTGQLDKRAI-----------ELEFVAG--AYWRGDEKKQMLQRIY 193

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
                S+  +  +  ++ +E         +R  +   +DL+   I +      +      
Sbjct: 194 GTAWESEEQL--KAYQVQKE------EAKRRDHRRLGQDLNLFSIQEDAGGGLVFWHPKG 245

Query: 807 KELKSVMDALQKKIQ 821
             ++ +++   KK+ 
Sbjct: 246 SMVRHIIEDYWKKMH 260


>gi|73667547|ref|YP_303563.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
 gi|123745825|sp|Q3YQP0|SYT_EHRCJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|72394688|gb|AAZ68965.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Ehrlichia canis
           str. Jake]
          Length = 633

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I H   H++  A+  I        G  I  DG  +D       +S +L+ IE  + +II 
Sbjct: 71  IRHDTAHIMAQAVKEIFPDTQITIGPTI-KDGFYYDFATEHNFSSNDLEIIEKKMIEIIN 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N   +  +  RE+AI   ++  +G  Y  ++       E+  V+       LC G H  
Sbjct: 130 KNESFIREVWTREEAIKFFSS--IGEDYKVKIISKIPNNENITVYKQGNFIDLCRGPHAP 187

Query: 701 STGEIMLLYIVSESS 715
           ST       +   S 
Sbjct: 188 STKTSKSFKLTKVSG 202


>gi|326392943|ref|ZP_08214136.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus JW 200]
 gi|325991015|gb|EGD49814.1| phosphoesterase DHHA1 [Thermoanaerobacter ethanolicus JW 200]
          Length = 41

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
           +  G GGGRP MAQ  G N +K D+A+      +K+
Sbjct: 2   VSEGNGGGRPDMAQGTGKNLSKVDEALNKAIDIVKE 37


>gi|215446866|ref|ZP_03433618.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289758745|ref|ZP_06518123.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
 gi|289714309|gb|EFD78321.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T85]
          Length = 692

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HS  H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 73  VAANTDDGR---SVIRHSTAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 128

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 129 DLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGD-AEIMEVGGD 187

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 188 ELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSA 229


>gi|150006539|ref|YP_001301283.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|319642944|ref|ZP_07997580.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
 gi|166223322|sp|A6L7J7|SYT_BACV8 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149934963|gb|ABR41661.1| threonyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482]
 gi|317385492|gb|EFV66435.1| threonyl-tRNA synthetase [Bacteroides sp. 3_1_40A]
          Length = 646

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + I    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAIIKEADLPAIEAKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   +V + + +EDA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEILVRQSIAKEDALKKFGER--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H++ST  I  + +++ +         R  + RI  IT
Sbjct: 185 HLTSTAPIKAIKLLTVAGAYWRGQEDRKQMTRIYGIT 221


>gi|15609751|ref|NP_217130.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv]
 gi|15842154|ref|NP_337191.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31793799|ref|NP_856292.1| threonyl-tRNA synthetase [Mycobacterium bovis AF2122/97]
 gi|121638501|ref|YP_978725.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148662454|ref|YP_001283977.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148823808|ref|YP_001288562.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis F11]
 gi|167968044|ref|ZP_02550321.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|215404564|ref|ZP_03416745.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987]
 gi|215412399|ref|ZP_03421153.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 94_M4241A]
 gi|215428017|ref|ZP_03425936.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T92]
 gi|215431569|ref|ZP_03429488.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|218754354|ref|ZP_03533150.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis GM 1503]
 gi|219558618|ref|ZP_03537694.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T17]
 gi|224990995|ref|YP_002645682.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798303|ref|YP_003031304.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 1435]
 gi|254551665|ref|ZP_05142112.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260187628|ref|ZP_05765102.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A]
 gi|260201742|ref|ZP_05769233.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|260205937|ref|ZP_05773428.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis K85]
 gi|289444154|ref|ZP_06433898.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289448265|ref|ZP_06438009.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CPHL_A]
 gi|289553596|ref|ZP_06442806.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 605]
 gi|289570786|ref|ZP_06451013.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T17]
 gi|289575325|ref|ZP_06455552.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis K85]
 gi|289746408|ref|ZP_06505786.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis 02_1987]
 gi|289751239|ref|ZP_06510617.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T92]
 gi|289754734|ref|ZP_06514112.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289762788|ref|ZP_06522166.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis GM 1503]
 gi|294994277|ref|ZP_06799968.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis 210]
 gi|297635225|ref|ZP_06953005.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297732218|ref|ZP_06961336.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298526090|ref|ZP_07013499.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776889|ref|ZP_07415226.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu001]
 gi|306780653|ref|ZP_07418990.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu002]
 gi|306785417|ref|ZP_07423739.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu003]
 gi|306790017|ref|ZP_07428339.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu004]
 gi|306794098|ref|ZP_07432400.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu005]
 gi|306798512|ref|ZP_07436814.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu006]
 gi|306804375|ref|ZP_07441043.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu008]
 gi|306807585|ref|ZP_07444253.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu007]
 gi|306969787|ref|ZP_07482448.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu009]
 gi|307080714|ref|ZP_07489884.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu011]
 gi|307085303|ref|ZP_07494416.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu012]
 gi|313659553|ref|ZP_07816433.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475]
 gi|54039692|sp|P67583|SYT_MYCBO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|54042049|sp|P67582|SYT_MYCTU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225463|sp|A1KLW4|SYT_MYCBP RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225467|sp|A5U5W5|SYT_MYCTA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783528|sp|C1AF85|SYT_MYCBT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2104299|emb|CAB08628.1| PROBABLE THREONYL-TRNA SYNTHETASE THRS (THREONINE-TRNA
           SYNTHETASE)(ThrRS) (THREONINE-TRNA LIGASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13882439|gb|AAK47005.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551]
 gi|31619393|emb|CAD94831.1| PROBABLE THREONYL-TRNA SYNTHETASE THRS (THREONINE-TRNA
           SYNTHETASE)(ThrRS) (THREONINE-TRNA LIGASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494149|emb|CAL72627.1| Probable threonyl-tRNA synthetase thrS [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148506606|gb|ABQ74415.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra]
 gi|148722335|gb|ABR06960.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis F11]
 gi|224774108|dbj|BAH26914.1| threonyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319806|gb|ACT24409.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 1435]
 gi|289417073|gb|EFD14313.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis T46]
 gi|289421223|gb|EFD18424.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CPHL_A]
 gi|289438228|gb|EFD20721.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 605]
 gi|289539756|gb|EFD44334.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis K85]
 gi|289544540|gb|EFD48188.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T17]
 gi|289686936|gb|EFD54424.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis 02_1987]
 gi|289691826|gb|EFD59255.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis T92]
 gi|289695321|gb|EFD62750.1| threonyl-tRNA synthetase [Mycobacterium tuberculosis EAS054]
 gi|289710294|gb|EFD74310.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis GM 1503]
 gi|298495884|gb|EFI31178.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214743|gb|EFO74142.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu001]
 gi|308326483|gb|EFP15334.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu002]
 gi|308329935|gb|EFP18786.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu003]
 gi|308333550|gb|EFP22401.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu004]
 gi|308337578|gb|EFP26429.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu005]
 gi|308341244|gb|EFP30095.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu006]
 gi|308345982|gb|EFP34833.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu007]
 gi|308349051|gb|EFP37902.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu008]
 gi|308352705|gb|EFP41556.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu009]
 gi|308361561|gb|EFP50412.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu011]
 gi|308365172|gb|EFP54023.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu012]
 gi|323718811|gb|EGB27968.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis CDC1551A]
 gi|326904227|gb|EGE51160.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis W-148]
 gi|328458073|gb|AEB03496.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis KZN 4207]
          Length = 692

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HS  H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 73  VAANTDDGR---SVIRHSTAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 128

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 129 DLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGD-AEIMEVGGD 187

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 188 ELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSA 229


>gi|260363549|ref|ZP_05776378.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260876346|ref|ZP_05888701.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260898617|ref|ZP_05907113.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|260899283|ref|ZP_05907678.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308086889|gb|EFO36584.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466]
 gi|308093003|gb|EFO42698.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308106631|gb|EFO44171.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308113039|gb|EFO50579.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 317

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 65/255 (25%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   VV D TPF+  +        D G  + +  + ++ D                    
Sbjct: 53  EVTYVVTDVTPFHPVSHIWPDHPADKGILVFNDQQFEVIDCQVGAIEVATGELFVGAAIP 112

Query: 546 VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  EG    V H +     L     + L +D + ++ LS  HSA HL + AL+ +L +
Sbjct: 113 VKRDTEGWLFVVVHVLALVDTLSQGTRVTLKVDKEYQQALSRGHSAGHLAYLALNKVLAA 172

Query: 604 HVS-------------------QNGSCITPDGLRFDVTHSKPITS---------AELKSI 635
                                 Q  S +TPD         K +           ++L+ I
Sbjct: 173 SYWRKDADRKDPHGNYDFNSYAQEASFVTPDKCLDTYRLGKTLRKRGLNSAEMLSDLEKI 232

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN  +          + R+ AI        G    D         E  G  +   CG
Sbjct: 233 EGQVNAQLK-------FWLERDAAIIMDC---HGDNLTDSRYWKCDLGE--GELAVIPCG 280

Query: 696 GTHVSSTGEIMLLYI 710
           GTH     +   +++
Sbjct: 281 GTHAEHLSDFGSIHV 295


>gi|308379255|ref|ZP_07485665.2| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu010]
 gi|308357619|gb|EFP46470.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis SUMu010]
          Length = 697

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HS  H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 78  VAANTDDGR---SVIRHSTAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 133

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 134 DLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGD-AEIMEVGGD 192

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 193 ELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSA 234


>gi|254365284|ref|ZP_04981329.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134150797|gb|EBA42842.1| threonyl-tRNA synthetase thrS [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 692

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           +    D        I HS  H+L  A+  +        G  IT DG  +D    +P T  
Sbjct: 73  VAANTDDGR---SVIRHSTAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFDVPEPFTPE 128

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYE 684
           +L ++E  +  I+ +      R+         E A       L+  K  D   ++ V  +
Sbjct: 129 DLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGD-AEIMEVGGD 187

Query: 685 DGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESS 715
           +   + +            LC G H+ +T  I    +   S+
Sbjct: 188 ELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSA 229


>gi|284037110|ref|YP_003387040.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
 gi|283816403|gb|ADB38241.1| threonyl-tRNA synthetase [Spirosoma linguale DSM 74]
          Length = 647

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 22/156 (14%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ HLL  AL ++        G  I   G  +DV    +P +  + K +ED + ++  Q
Sbjct: 79  HSSAHLLAEALESLYPGVKFGIGPAIET-GFYYDVDLGGQPFSQEDFKKVEDKMLELARQ 137

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-------HSSALCGGTH 698
               + + M++ DAIA         +  D  ++  +E  D G          + LC G H
Sbjct: 138 KQQYIRKPMSKADAIAYF------EEKGDPYKLDLLEGLDDGTITFYTQGDFTDLCRGPH 191

Query: 699 VSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
           + +TG I    +++ +            + RI A+T
Sbjct: 192 IPNTGFIKAAKLMNVAGAYWRGNEKNKQLTRIYAVT 227


>gi|283769478|ref|ZP_06342374.1| threonine--tRNA ligase [Bulleidia extructa W1219]
 gi|283103746|gb|EFC05132.1| threonine--tRNA ligase [Bulleidia extructa W1219]
          Length = 584

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
           +NHS  HLL  A+  +        G  +  +G  +D+    + I   ++  IE  +    
Sbjct: 12  LNHSCAHLLAQAVKHLYPQAKFWVGPVV-EEGFYYDIDLGDEVIRDEDIPKIEKEMKKCA 70

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
             N  ++   ++R +A+           Y   +     E  +  ++S      LC G HV
Sbjct: 71  KDNKRIIRHEISRAEALQQFQ----DDPYKVDLINRMPEDTNISMYSQGDFTDLCRGPHV 126

Query: 700 SST 702
            ST
Sbjct: 127 EST 129


>gi|169629982|ref|YP_001703631.1| threonyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977]
 gi|238688903|sp|B1MCK6|SYT_MYCA9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|169241949|emb|CAM62977.1| Threonyl-tRNA synthetase [Mycobacterium abscessus]
          Length = 684

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+  +        G  IT DG  +D       T  +L ++E  +  II 
Sbjct: 74  IRHSAAHVLAQAVQELFPQAKLGIGPPIT-DGFYYDFGIDHAFTPEDLTALEKKMKQIIK 132

Query: 645 QNLPVVTRIM-NREDAIASGAAALLGTKY------NDRVRVVSVEYEDGGVHSS------ 691
           +      R+  + E+A A  A      +        D   V+ V  ++   + +      
Sbjct: 133 EGQRFSRRVYESVEEAQAELANEPFKLELVSDKSGADDPEVMEVGGDELSAYDNLNPRTG 192

Query: 692 -----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSL 745
                 LC G H+ +T  I    +    S  A  R  +A    QR         E L   
Sbjct: 193 EREWFDLCRGPHIPTTKHIPAFRLTR--SSAAYWRGNQANASMQRVYGTAWESQEALDKH 250

Query: 746 ASFL 749
              L
Sbjct: 251 LELL 254


>gi|118586378|ref|ZP_01543828.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
 gi|118433195|gb|EAV39911.1| threonyl-tRNA synthetase 1 [Oenococcus oeni ATCC BAA-1163]
          Length = 663

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 22/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS----KPITSAELKSIEDNVN 640
           + HS THLL  AL  +        G  I  +G  +D   S    K + + E   IE  + 
Sbjct: 74  LRHSTTHLLAQALRRLHPKIHFGVGVAI-ANGFYYDTDDSDESEKQVAADEFPKIEAEMK 132

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            ++  N+P+  +I++R++A+   A         ND      +     G ++    GG  V
Sbjct: 133 KLVQANIPIQHQIVSRKEALKIFAEDPYKIALINDFPADQEITIVKQGDYTDLDRGGL-V 191

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG I    + S   +     R             M  ++ ++ +    + +  N+  +
Sbjct: 192 PSTGWIKHFALTS---VAGAYWR------------GMSDNQMMQRIYGLSEWNPENLEAQ 236

Query: 760 VEEIWEEYRKLQLIHAKR 777
            + + E   +      K+
Sbjct: 237 KKALEERKERDHRTIGKQ 254


>gi|313202757|ref|YP_004041414.1| ser-tRNA(thr) hydrolase; threonyL-tRNA synthetase [Paludibacter
           propionicigenes WB4]
 gi|312442073|gb|ADQ78429.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Paludibacter
           propionicigenes WB4]
          Length = 648

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 16/176 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            + T+ ++ L        + +  HS+ HL+  AL  +        G  I  +G  +DV  
Sbjct: 50  PIETDAAIKLHKWDDEEAKHAFWHSSAHLMAEALQELYPGIKFGIGPAI-ENGFYYDVDP 108

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +      +L  IE  + ++  +   +V   +++ DA+       +G  Y   + + ++E
Sbjct: 109 GEVSIKEGDLPVIEAKMLELAQRKEAIVRSDISKADALKRFGD--IGEVYKTEM-IEALE 165

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
                +++      LC G H+ +TG+I  + ++S +         R  + R+  IT
Sbjct: 166 DGKITLYTQGNFTDLCRGPHLPNTGDIKAIKVLSVAGAYWRGDEKRKMLTRLYGIT 221


>gi|227549145|ref|ZP_03979194.1| threonyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078786|gb|EEI16749.1| threonyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 884

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 64/194 (32%), Gaps = 37/194 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D   ++P T  +L ++E  +  II 
Sbjct: 75  IRHSAAHVLAQAVQAEFPGTKLGIGPAID-DGFYYDFDVAEPFTPDDLVTLEKRMKKIIK 133

Query: 645 QNLP-VVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVS 680
           Q    V     + E+A    A  L    Y                        D     +
Sbjct: 134 QGQKFVRGVYQSVEEA----AEDLKDEPYKLELIQDKGNVDPDSDEATEVGAGDLTHYDN 189

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARS 733
           V    G V    LC G HV +T  I    +   S+         AG++RI   T   ++ 
Sbjct: 190 VNPRTGEVEWHDLCRGPHVPTTKYIPAFALTRSSAAYWRGDQNNAGLQRIYG-TAWESKE 248

Query: 734 HLMGQDEKLKSLAS 747
            L      L+    
Sbjct: 249 RLDEHLHMLREAEK 262


>gi|293372832|ref|ZP_06619210.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|298480838|ref|ZP_06999033.1| threonine--tRNA ligase [Bacteroides sp. D22]
 gi|292632207|gb|EFF50807.1| threonine--tRNA ligase [Bacteroides ovatus SD CMC 3f]
 gi|295085227|emb|CBK66750.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Bacteroides
           xylanisolvens XB1A]
 gi|298272861|gb|EFI14427.1| threonine--tRNA ligase [Bacteroides sp. D22]
          Length = 646

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKESDLPAIEAKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEEVVRKSIAKTDALKMFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + + S +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLTSVAGAYWRGHEDRKMLTRIYGIT 221


>gi|237716078|ref|ZP_04546559.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262407690|ref|ZP_06084238.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|294643798|ref|ZP_06721596.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294808458|ref|ZP_06767211.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229443725|gb|EEO49516.1| threonyl-tRNA synthetase [Bacteroides sp. D1]
 gi|262354498|gb|EEZ03590.1| threonyl-tRNA synthetase [Bacteroides sp. 2_1_22]
 gi|292640887|gb|EFF59107.1| threonine--tRNA ligase [Bacteroides ovatus SD CC 2a]
 gi|294444386|gb|EFG13100.1| threonine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 646

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKESDLPAIEAKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEEVVRKSIAKTDALKMFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + + S +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLTSVAGAYWRGHEDRKMLTRIYGIT 221


>gi|193215696|ref|YP_001996895.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
 gi|238692696|sp|B3QUU7|SYT_CHLT3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193089173|gb|ACF14448.1| threonyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110]
          Length = 659

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 21/201 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS++HL+  A+  +        G  I   G  +DV      + A+L+ IE  + +I  
Sbjct: 80  YWHSSSHLMAQAIEELFPGTKFGAGPSIET-GFYYDVASEHRFSEADLREIEARMLEISN 138

Query: 645 QNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           ++L +    ++RE AI                 D ++   V         S LC G H S
Sbjct: 139 RDLQIQREELSREAAIEYFKTRREDPFKVEILEDTLKDTPVVSIYHQGEFSDLCSGPHFS 198

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           ST ++  + + S   I     R     G  +R  +             +      ++ + 
Sbjct: 199 STSKLKAVRLTS---ISGSFWR-----GDASRQQMQRIYG--------VSFPSEKLLKKH 242

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
               EE +K        +L+L
Sbjct: 243 FSQIEEAKKRDHRKLGSELEL 263


>gi|90579805|ref|ZP_01235613.1| hypothetical metal-dependent hydrolase [Vibrio angustum S14]
 gi|90438690|gb|EAS63873.1| hypothetical metal-dependent hydrolase [Vibrio angustum S14]
          Length = 291

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 85/257 (33%), Gaps = 49/257 (19%)

Query: 507 SGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD------------------ 545
           SG +  VV   TPF+  +        D G  I  G + Q+ +                  
Sbjct: 28  SGDENYVVTQSTPFHPVSHIWPDHPADQGMVIHAGKQYQVNNCVVGSIDLATNSLFIAQD 87

Query: 546 --VQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             V++  +G       +  G +      ++ L++D + ++ LS  HSA HL   AL+ +L
Sbjct: 88  IPVKRDTDGWVFVVVHIITGTIDFDIGNTVTLSVDREYQQSLSRGHSAGHLSSLALNKVL 147

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAE--------------LKSIEDNVNDIIAQ-N 646
            +   +       +   +D        S                L+    N  D++A+ N
Sbjct: 148 HNDFWRKEPTRRDELGYYDFHSYAQEKSEVTPDLSTDTYRLGKTLRKRGLNSADLLAELN 207

Query: 647 LPVVTRIMNREDAIASG---AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           L      +   D +A          G    D  R         GV     CGGTH+ S  
Sbjct: 208 LVAERINLQLSDWVALKTAVLMRREGDHLTD-SRYWQCNLGSEGVIEI-PCGGTHILSLS 265

Query: 704 E----IMLLYIVSESSI 716
           E     +   + SE  I
Sbjct: 266 EYQSVTVSFKVNSEQEI 282


>gi|281423114|ref|ZP_06254027.1| threonine--tRNA ligase [Prevotella oris F0302]
 gi|281402450|gb|EFB33281.1| threonine--tRNA ligase [Prevotella oris F0302]
          Length = 649

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 16/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +   G  +DV   K   I+  +   IE  + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ESGFFYDVMPPKGQTISENDFPKIEAKML 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++ PVV + +++ DA+    A   G  Y        +E      ++      LC G
Sbjct: 128 ELAKKDEPVVRKNISKSDALQEFQAD--GQTYKCEHIEQDLEDGTISTYTQGHFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+ STG I  + I S +         R  + RI  IT
Sbjct: 186 PHLMSTGLIKAVKITSVAGAFWRGDAKREQMTRIYGIT 223


>gi|290889941|ref|ZP_06553027.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
 gi|290480383|gb|EFD89021.1| hypothetical protein AWRIB429_0417 [Oenococcus oeni AWRIB429]
          Length = 663

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 22/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS----KPITSAELKSIEDNVN 640
           + HS THLL  AL  +        G  I  +G  +D   S    K + + E   IE  + 
Sbjct: 74  LRHSTTHLLAQALRRLHPKIHFGVGVAI-ANGFYYDTDDSDESEKQVAADEFPKIEAEMK 132

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            ++  N+P+  +I++R++A+   A         ND      +     G ++    GG  V
Sbjct: 133 KLVQANIPIQHQIVSRKEALKIFAEDPYKIALINDFPADQEITIVKQGDYTDLDRGGL-V 191

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG I    + S   +     R             M  ++ ++ +    + +  N+  +
Sbjct: 192 PSTGWIKHFALTS---VAGAYWR------------GMSDNQMMQRIYGLSEWNPENLEAQ 236

Query: 760 VEEIWEEYRKLQLIHAKR 777
            + + E   +      K+
Sbjct: 237 KKALEERKERDHRTIGKQ 254


>gi|116490538|ref|YP_810082.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
 gi|116091263|gb|ABJ56417.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Oenococcus oeni
           PSU-1]
          Length = 663

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 22/198 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS----KPITSAELKSIEDNVN 640
           + HS THLL  AL  +        G  I  +G  +D   S    K + + E   IE  + 
Sbjct: 74  LRHSTTHLLAQALRRLHPKIHFGVGVAI-ANGFYYDTDDSDESEKQVAADEFPKIEAEMK 132

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            ++  N+P+  +I++R++A+   A         ND      +     G ++    GG  V
Sbjct: 133 KLVQANIPIQHQIVSRKEALKIFAEDPYKIALINDFPADQEITIVKQGDYTDLDRGGL-V 191

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG I    + S   +     R             M  ++ ++ +    + +  N+  +
Sbjct: 192 PSTGWIKHFALTS---VAGAYWR------------GMSDNQMMQRIYGLSEWNPENLEAQ 236

Query: 760 VEEIWEEYRKLQLIHAKR 777
            + + E   +      K+
Sbjct: 237 KKALEERKERDHRTIGKQ 254


>gi|219684484|ref|ZP_03539428.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
 gi|219672473|gb|EED29526.1| threonyl-tRNA synthetase [Borrelia garinii PBr]
          Length = 593

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 26  KRHSIAHVMAEAVCDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 84

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    +S+      +    LC G HV +
Sbjct: 85  TGSSFEKEIISLEQALEIFKDEPYKIDLIKNFDLQNEISIYKSHNFID---LCRGPHVDN 141

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        + I     R               ++  L  +   L  ++  +   + 
Sbjct: 142 MNKIDP-KAFKLTGIAGAYWR------------GNEKNTMLTRIYGTLWNNEKELRSYL- 187

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 188 NLREEIKKRDHRKLGKELDL 207


>gi|125624939|ref|YP_001033422.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|166223350|sp|A2RN48|SYT_LACLM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|124493747|emb|CAL98736.1| ThrS protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071738|gb|ADJ61138.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 646

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A      +     G  I           +  I++ +L +IE  +  I+ 
Sbjct: 71  LRHSAAHLFAQAAKRHFPNIHLGVGPAIQDGFYYDTDNEAGQISNDDLATIEAEMKKIVK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYEDGGVHSSALCGGTHVSST 702
           +N     + +++E+A    A+     +  +        +     G ++  LC G HV ST
Sbjct: 131 ENFKSERKEVSKEEAKEIFASDPYKLELIEEHNEDEGGLTIYTQGEYTD-LCRGPHVPST 189

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G I   +++   ++     R
Sbjct: 190 GVIKFFHLL---NVAGAYWR 206


>gi|254383626|ref|ZP_04998976.1| threonyl-tRNA synthetase [Streptomyces sp. Mg1]
 gi|194342521|gb|EDX23487.1| threonyl-tRNA synthetase [Streptomyces sp. Mg1]
          Length = 658

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII- 643
           + HS  H++  A+  +        G  +  +G  +D    KP T  +LK+IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPVQ-NGFYYDFDVEKPFTPDDLKAIEKKMQEIQK 129

Query: 644 ---AQNLPVVTRIMNRED-AIASGAAALLGTKYN---DRVRVVSVEYEDGGVHS------ 690
                   VVT    RE+ A       L+G K +   D    V V   +  ++       
Sbjct: 130 RGQRFARRVVTDEAAREELAGEPYKLELIGIKGSASTDDGANVEVGGGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 223


>gi|85375301|ref|YP_459363.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
 gi|123293655|sp|Q2N6X5|SYT_ERYLH RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|84788384|gb|ABC64566.1| threonyl-tRNA synthetase [Erythrobacter litoralis HTCC2594]
          Length = 672

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 44/224 (19%)

Query: 523 EAGGQLGDTGCAIGDGIRL---------QITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573
           EAG    D   AIG G+           ++ D+ +  EG               E++L+ 
Sbjct: 18  EAGATPADVAAAIGPGLAKAALAAKVDGEVRDLNRPFEG-------------DAELALIT 64

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK---PITSA 630
           + D +   +L+  H   H+L  A+  +        G   T DG  +DV       P    
Sbjct: 65  SRDEEEALELAR-HDYAHVLAEAVQALWPGTQITFGPA-TDDGFYYDVKAPDSRDPFGMD 122

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +L +IE+ + +II  + P+V  + +RE  I    A   G  +         E E+  V+ 
Sbjct: 123 DLPAIEEKMREIIKADKPLVREVWSREQLIEKWEA--EGEVFKAEWAKELPEDEELTVYW 180

Query: 691 S----------ALCGGTHVSSTG--EIMLLYIVSESSIRAGIRR 722
           S           +C G H++STG  +     ++    +     R
Sbjct: 181 SGEPGGEDSWLDMCRGPHLASTGKLDPQAFKLM---RVAGAYWR 221


>gi|167957086|ref|ZP_02544160.1| threonyl-tRNA synthetase [candidate division TM7 single-cell
           isolate TM7c]
          Length = 603

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 32/166 (19%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNVNDI 642
           S+ HS  H++  A+  +        G  I  +G  +D+       S + L  IE  +  I
Sbjct: 8   SMRHSLAHIMAQAVQRLWPQAKFGVGPAI-ENGFYYDIYLDGATISEDSLPKIEKEMRKI 66

Query: 643 IAQNLPVVTRIMNREDAIAS----------------------GAAALLGTKYND----RV 676
           I+ N P   R +  ++AI                         A+ L G           
Sbjct: 67  ISANYPFERRDVAIDEAIDWAKENQQNFKIELLNDLKRSGTTVASELSGEDIGSANEAPS 126

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +V +V     G +   LC G HV STG++    +     +     R
Sbjct: 127 KVKAVSLYSQGDYVD-LCRGGHVDSTGKVGAFKLTK---VAGAYWR 168


>gi|17232215|ref|NP_488763.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
 gi|17133860|dbj|BAB76422.1| threonyl-tRNA synthetase [Nostoc sp. PCC 7120]
          Length = 612

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 46/204 (22%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + + I H+  H++  A+  +        G  +T +G  +D      IT  +L  I   + 
Sbjct: 19  QLVRIRHTCAHIMAMAVQKLFLGTKVATGP-VTDNGFYYDFDCPISITPDDLGKIAAEMR 77

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE---------------- 684
            II  NLP++   + RE+       A L   Y   +       E                
Sbjct: 78  RIIKANLPIIREEVQREE--IRTEIAQLNEPYKLEILDRIPPEETITRYFIGSPDTSTPE 135

Query: 685 ---------DGGVHSSALCGGTHVSSTGEIML--LYIVSESSIRAGIR----------RI 723
                        +   LC G H++ TGEI      ++   +I               RI
Sbjct: 136 SSLFVADVKPASNYWWDLCAGPHINFTGEIDPNSFQLL---NIAGAYWQGDESKPQLQRI 192

Query: 724 E---AITGQRARSHLMGQDEKLKS 744
                 T     ++L  ++E L+ 
Sbjct: 193 YGTAWKTKAELEAYLKQREEALRR 216


>gi|28897387|ref|NP_796992.1| hypothetical protein VP0613 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805599|dbj|BAC58876.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 293

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 65/255 (25%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   VV D TPF+  +        D G  + +  + ++ D                    
Sbjct: 29  EVTYVVTDVTPFHPVSHIWPDHPADKGILVFNDQQFEVIDCQVGAIEVATGELFVGAAIP 88

Query: 546 VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  EG    V H +     L     + L +D + ++ LS  HSA HL + AL+ +L +
Sbjct: 89  VKRDTEGWLFVVVHVLALVDTLSQGTRVTLKVDKEYQQALSRGHSAGHLAYLALNKVLAA 148

Query: 604 HVS-------------------QNGSCITPDGLRFDVTHSKPITS---------AELKSI 635
                                 Q  S +TPD         K +           ++L+ I
Sbjct: 149 SYWRKDADRKDPHGNYDFNSYAQEASFVTPDKCLDTYRLGKTLRKRGLNSAEMLSDLEKI 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN  +          + R+ AI        G    D         E  G  +   CG
Sbjct: 209 EGQVNAQLK-------FWLERDAAIIMDC---HGDNLTDSRYWKCDLGE--GELAVIPCG 256

Query: 696 GTHVSSTGEIMLLYI 710
           GTH     +   +++
Sbjct: 257 GTHAEHLSDFGSIHV 271


>gi|299140628|ref|ZP_07033766.1| threonine--tRNA ligase [Prevotella oris C735]
 gi|298577594|gb|EFI49462.1| threonine--tRNA ligase [Prevotella oris C735]
          Length = 649

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 16/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  H++ HLL  AL  +        G  +   G  +DV   K   I+  +   IE  + 
Sbjct: 69  HTFWHTSAHLLAEALQELYPGIQFGFGPAV-ESGFFYDVMPPKGQTISENDFPKIEAKML 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           ++  ++ PVV + +++ DA+    +   G  Y        +E      ++      LC G
Sbjct: 128 ELAKKDEPVVRKNISKADALQEFQSD--GQTYKCEHIEQDLEDGTISTYTQGHFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+ STG I  + I S +         R  + RI  IT
Sbjct: 186 PHLMSTGLIKAVKITSVAGAFWRGDAKREQMTRIYGIT 223


>gi|325523384|gb|EGD01719.1| putative metal-dependent hydrolase [Burkholderia sp. TJI49]
          Length = 100

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDG 686
           +  ++E  + +++    PV T  +  ++  A        ++       RVR++ +E  D 
Sbjct: 4   DRDAVERRLAELVGGAHPVTTEWITDDEMAARPELVRTMSVKPPMGLGRVRLLRIEGVDL 63

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
                  CGGTHV +T EI  L +       A  RR+
Sbjct: 64  -----QPCGGTHVRNTSEIGALRVAKLEKKSARTRRL 95


>gi|301089746|ref|XP_002895146.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262101719|gb|EEY59771.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 744

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R  +   HS+ H+L  +L TI G+H++  G  +           ++ I  ++L  I
Sbjct: 169 DAEGR--MVFWHSSAHILGESLETIKGAHLTI-GPPVEGGFYYDSYMGTETIPESDLSVI 225

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E     ++         ++++E+A+   A  +       + +++S +  DGG  ++  CG
Sbjct: 226 EKACQKVVKDKQKFERIVLSKEEALEMFADNVF------KTQIISTKIPDGGKTTAYRCG 279

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G HV  TG+I  L +   SS
Sbjct: 280 PLIDLCRGPHVPHTGKIKALAVTRTSS 306


>gi|303278011|ref|XP_003058299.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460956|gb|EEH58250.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 698

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
           L I H+A H+   A   +        G  I   G  +D  +    +  +LK I+  +  I
Sbjct: 120 LKIRHTAAHICAMATQKLFPDAKCTIGPWIDR-GFYYDFDYKPGFSEQDLKKIKKQMIKI 178

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYN---------DRVRVVSVEYEDGGVHSSAL 693
           I ++ P+    ++RE+A        L   Y          + + +  +  E        L
Sbjct: 179 INKDYPLRREEVSREEATRR--IKELNEPYKLEILDAIKTEPITIYHIGEEGDENAWWDL 236

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           C G HV ST +I     +   ++     R
Sbjct: 237 CAGPHVESTKKIHP-KAIDLEAVAGAYWR 264


>gi|46447649|ref|YP_009014.1| threonyl-tRNA synthetase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|73919812|sp|Q6M9L0|SYT_PARUW RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|46401290|emb|CAF24739.1| probable threonine-tRNA ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 650

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 81/205 (39%), Gaps = 19/205 (9%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L+    ++L   +    +++   H++ H+L  A+  +        G  I  +G  +D  
Sbjct: 56  PLQEGDQVILWGFNDPEGKEI-FWHTSAHVLAQAILRLWPDAQPTIGPPI-ENGFYYDFA 113

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVS- 680
            +  I+ A+ + IE  +  II++N  +   +++ + DA+          +  +     S 
Sbjct: 114 -NLTISDADFEKIEKEMQAIISENFQIKREVISTKSDALKQFQNNPYKCELINSFEDEST 172

Query: 681 -VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT---GQ 729
              Y  G  +   LC G H+ + G+I  L ++  +       S +  + RI AI+    +
Sbjct: 173 LTGYRQGEFYD--LCRGPHLFNLGKIKALKLMKTAGAYWRGDSNKEMLTRIYAISFPDRK 230

Query: 730 RARSHLMGQDEKLKSLASFLKVSQG 754
             + +L   +E  K     L     
Sbjct: 231 LLKDYLHQLEEAKKRDHKLLGAKLD 255


>gi|15673893|ref|NP_268068.1| theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281492524|ref|YP_003354504.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|22654138|sp|Q9CED2|SYT_LACLA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|12724948|gb|AAK06009.1|AE006421_2 theronyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403]
 gi|281376188|gb|ADA65679.1| Threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147]
 gi|326407464|gb|ADZ64535.1| threonyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56]
          Length = 646

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A            G  I           +  I++ +L +IE  +  I+ 
Sbjct: 71  LRHSAAHLFAQAAKRHFPDIHLGVGPAIQDGFYYDTDNEAGQISNDDLATIEAEMKKIVK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYEDGGVHSSALCGGTHVSST 702
           +N     + +++E+A    A      +  +        +     G ++  LC G HV ST
Sbjct: 131 ENFKSERKEVSKEEAKEIFANDPYKLELIEEHNEDEGGLTIYTQGEYTD-LCRGPHVPST 189

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G I   +++   ++     R
Sbjct: 190 GVIKFFHLL---NVAGAYWR 206


>gi|291450340|ref|ZP_06589730.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
 gi|291353289|gb|EFE80191.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 660

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 24/158 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +   G  +D   ++P T  +LK +E  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KGGFYYDFDVAEPFTPEDLKRVEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTK---------------YNDRVRVVSVEYE 684
           +      R+   EDA A          L+G K                 +     +++ +
Sbjct: 130 RGQRFSRRVTTDEDARAELAGEPYKLELIGLKGNAAQAADGADAEVGGGELTIYDNLDAK 189

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            G +    LC G H+ +T  I    ++      A   R
Sbjct: 190 TGELCWKDLCRGPHLPTTRNIPAFKLM---RSAAAYWR 224


>gi|239978444|ref|ZP_04700968.1| threonyl-tRNA synthetase [Streptomyces albus J1074]
          Length = 655

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 24/158 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +   G  +D   ++P T  +LK +E  + +I  
Sbjct: 66  LRHSTAHVMAQAVQELFPEAKLGIGPPV-KGGFYYDFDVAEPFTPEDLKRVEKKMQEIQK 124

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTK---------------YNDRVRVVSVEYE 684
           +      R+   EDA A          L+G K                 +     +++ +
Sbjct: 125 RGQRFSRRVTTDEDARAELAGEPYKLELIGLKGNAAQAADGADAEVGGGELTIYDNLDAK 184

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            G +    LC G H+ +T  I    ++      A   R
Sbjct: 185 TGELCWKDLCRGPHLPTTRNIPAFKLM---RSAAAYWR 219


>gi|167945769|ref|ZP_02532843.1| Threonyl-tRNA synthetase, class IIa [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 165

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H A H++  A+  +        G  I  +G  +D    +P T  +LK IE  +++I+ 
Sbjct: 85  MRHDAAHVMAQAVQELYPGTQVTIGPAI-ENGFYYDFAREEPFTPDDLKKIEQRMHEIVK 143

Query: 645 QNLPVVTRIMNREDAIASG 663
           ++LP+   + +R +AI + 
Sbjct: 144 RDLPLQREVWDRAEAIKNF 162


>gi|59711241|ref|YP_204017.1| metal-dependent hydrolase [Vibrio fischeri ES114]
 gi|59479342|gb|AAW85129.1| Predicted metal-dependent hydrolase [Vibrio fischeri ES114]
          Length = 291

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 98/269 (36%), Gaps = 67/269 (24%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITDVQ--------- 547
           ++++E   G+   ++   TPF+  +        D G  + +     +   Q         
Sbjct: 23  QLIKETEQGK--WIITKATPFHPVSHIWPDHPEDKGVILINNEEYSVLACQTGAIELATG 80

Query: 548 -------------KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                        ++     V H I +   +  E ++ L +D + ++ LS  HSA H+ +
Sbjct: 81  ELYIGKDIPIKRGEEGWVFVVSHLISKDADIAVENTVTLRVDEEYQKALSRGHSAGHIAY 140

Query: 595 HALSTILGSHVS-------------------QNGSCITPDGLR---------FDVTHSKP 626
            AL+ +L ++                     Q  S ++ D                 +  
Sbjct: 141 LALNKVLHANYWRKDADRKDELGHYNFNSYAQETSFVSEDHCEDVYRLGKTLRKRGLNSA 200

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
              A+LK+IE+ VN  I + L + +++      +     AL  ++Y        V++   
Sbjct: 201 EMMADLKTIEEAVNHQIIEWLALESQVT-----MQCDGKALTDSRY------WIVDFGID 249

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G+ +   CGGTHVSS  E   + +  E  
Sbjct: 250 GI-AKLPCGGTHVSSFKEYATIIVKLEEK 277


>gi|77026364|gb|ABA61842.1| hypothetical threonine tRNA synthetase [Pimelobacter simplex]
          Length = 256

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 49/158 (31%), Gaps = 20/158 (12%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L     +   +         + HS  H+L  A+  +        G  I  DG  +D    
Sbjct: 100 LADGDEVEGVLIGSPDGLDILRHSTAHVLAQAVQQVFPEAKLGIGPPIQ-DGFYYDFDVE 158

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKYNDRVRVV 679
            P    +L  +E  +  II +N     R+   EDA+           L+G K N      
Sbjct: 159 TPFVPEDLVKLETRMRKIIKENQRFDRRVTTDEDALVELADEPYKVELIGLKGNAGEAAE 218

Query: 680 SVE--------------YEDGGVHSSALCGGTHVSSTG 703
                              +G V    LC G H+ +T 
Sbjct: 219 GAAAEVGAGELTIYDNINRNGEVAWKDLCRGPHLPTTK 256


>gi|323173023|gb|EFZ58654.1| alanyl-tRNA synthetase domain protein [Escherichia coli LT-68]
          Length = 51

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
             A +L  + A+ + GG GGGRP MAQ+GG +      A+A V  ++
Sbjct: 1   MKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALASVKGWV 46


>gi|14521612|ref|NP_127088.1| alanyl-tRNA synthetase fragment [Pyrococcus abyssi GE5]
 gi|5458831|emb|CAB50318.1| alaRS-like alanyl-tRNA synthetase related protein (fragment)
           [Pyrococcus abyssi GE5]
          Length = 159

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC-ITPDGLRFDVTHSKPITSAELK 633
           +D + R      HSA H++  A+  +LG       S  +  +     V   +  +  E++
Sbjct: 4   VDVEVR-----THSALHVVKGAVVKVLGERAKWTYSTYVKGNRGVLTVKFDRKPSEEEIR 58

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSS 691
            IE+  N+ + +N+P+    + RE+A       +        D   +  V  ED  V+  
Sbjct: 59  RIEELANEKVRENIPIKVYELPREEAEKRFGEEMYDLFPVPEDVKILKVVVIEDWNVN-- 116

Query: 692 ALCGGTHVSSTGEIMLLYIVSES-SIRAGIRRIEA 725
             C   HV  TGEI  + I         G+  +  
Sbjct: 117 -ACNKEHVKRTGEIGKIKIRKVRFRKSKGLLEVHF 150


>gi|253567818|ref|ZP_04845229.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
 gi|251841891|gb|EES69971.1| threonyl-tRNA synthetase [Bacteroides sp. 1_1_6]
          Length = 556

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 17/190 (8%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A G+      + R I      ++   D +   + +  H++ HLL  AL  +        G
Sbjct: 37  ACGVNGETYDLGRPINEDADFVLYKWDDEE-GKHAFWHTSAHLLAEALQELYPGIQFGIG 95

Query: 610 SCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
             I  +G  +DV   + +    +L +IE  + ++ A+   VV   +++ DA+        
Sbjct: 96  PAI-ENGFYYDVDPGEAVIKESDLPAIEAKMLELSAKKEAVVRESISKTDALKMFGDR-- 152

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------R 717
           G  Y   + +  +E      ++      LC G H+ +T  I  + + + +         R
Sbjct: 153 GETYKCEL-ISELEDGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTTVAGAYWRGHEDR 211

Query: 718 AGIRRIEAIT 727
             + RI  IT
Sbjct: 212 KMLTRIYGIT 221


>gi|327398462|ref|YP_004339331.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
 gi|327181091|gb|AEA33272.1| threonyl-tRNA synthetase [Hippea maritima DSM 10411]
          Length = 620

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 30/204 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  + G      G  I  +G  +D+   + IT  +LK IE  +  I+ 
Sbjct: 57  LRHSAAHIMAQAVQHVFGEAKFAIGPAI-ENGFYYDMDVGRTITDDDLKKIEKEMKKIVG 115

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----NDRVRVVSVEYEDGGVHSSALCGGTHV 699
            N     + + +E+A+        G +Y      D    V   Y  G      LC G H+
Sbjct: 116 ANYKFSRKELPKEEAVKIFQDK--GDEYKVEILKDLDEDVVSLYTQGDFTD--LCRGPHI 171

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVV 757
            STG +    +++             + G    ++  G + +  L+ +      ++  + 
Sbjct: 172 PSTGYLKHFKLLN-------------VAG----AYFKGDEARPMLQRIYGAAFATKEEL- 213

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL 781
            R  +  EE +K       ++L L
Sbjct: 214 DRYLKFLEEVKKRDHRKLGKQLDL 237


>gi|256422752|ref|YP_003123405.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
 gi|256037660|gb|ACU61204.1| threonyl-tRNA synthetase [Chitinophaga pinensis DSM 2588]
          Length = 646

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 96/266 (36%), Gaps = 35/266 (13%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG    D   +I +G+  ++   +   E             + T+ +L L        +
Sbjct: 15  EAGVTAMDVAKSISEGLARKVLAAKFNGE------VTDASRPITTDGTLQLLTWNDTDGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVND 641
            ++ HS+ HL+  AL  +        G  I  +G  +D+      I+  +L+ I D + +
Sbjct: 69  STMWHSSAHLMAEALEALYPGVKLGIGPAI-ENGFYYDIDLGGRSISEEDLQKIGDKMAE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH------SSALCG 695
           +   N     R +++ DA           K ++    +  + +DG +        + LC 
Sbjct: 128 LAKNNSVYERREVSKADAEKY-----FTEKNDEYKLELIRDLKDGSITFYTQGNFTDLCR 182

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G H+ +      +  +  ++I     R               +++ L  +      +Q  
Sbjct: 183 GPHIPN---TGFIKAIKLTNIAGAYWR------------GNEKNKMLTRIYGITFPTQKE 227

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
           +   +  + EE +K       ++L+L
Sbjct: 228 LDEYL-HLVEEAKKRDHRKLGKELEL 252


>gi|91225134|ref|ZP_01260356.1| hypothetical protein V12G01_12940 [Vibrio alginolyticus 12G01]
 gi|91190077|gb|EAS76348.1| hypothetical protein V12G01_12940 [Vibrio alginolyticus 12G01]
          Length = 311

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 77/246 (31%), Gaps = 47/246 (19%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   V+ D TPF+  +        D G    +G    + D                    
Sbjct: 49  EVTYVITDVTPFHPVSHIWPDHPADKGTLKVNGAEHDVVDCQVGAVEQESGALYVGSDIP 108

Query: 546 VQKKAEGIF--VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  EG    V H +           + L +D   +  LS  H+A HL + AL+ +L  
Sbjct: 109 VKRDDEGWVFVVVHVLSRTESFAINDLVTLAVDKDYQNALSRGHTAGHLAYLALNKVLSE 168

Query: 604 HVSQN-------------------GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
              +                     S +TPD         K +    L S  D +ND+ A
Sbjct: 169 DYWRKDADRKDPHGYYDFNSYAQVTSYVTPDKCLDTYRLGKTLRKRGLNSA-DMLNDLQA 227

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
               V  +++      A       G +  D         E  G  +   CGGTH S   E
Sbjct: 228 IAEKVNGQLVEWLQRDAMITMECHGDRLTDSRYWKCDLGE--GQLAVIPCGGTHASHLNE 285

Query: 705 IMLLYI 710
              + +
Sbjct: 286 FAFIQV 291


>gi|255560023|ref|XP_002521030.1| threonyl-tRNA synthetase, putative [Ricinus communis]
 gi|223539867|gb|EEF41447.1| threonyl-tRNA synthetase, putative [Ricinus communis]
          Length = 691

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 13/185 (7%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVN 640
           + +  HS+ H+L  +L    G  +         +G  +D  + +  +     K IE    
Sbjct: 147 RDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAFYGELGLNEEHFKKIEAGAL 206

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +A+  P     ++RE+A+   +         ND     ++     G     LC G H+
Sbjct: 207 KAVAEKQPFERIEVSREEALEIFSENNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHI 265

Query: 700 SSTGEIMLLYIVSESSI-------RAGIRRIEAIT---GQRARSHLMGQDEKLKSLASFL 749
            +T  +     +  SS        R  ++R+  I+    +R + ++   +E  K     L
Sbjct: 266 PNTSFVKAFACLKASSAYWRGNKDRESLQRVYGISYPDQKRLKEYIQQLEEAKKYDHRLL 325

Query: 750 KVSQG 754
              Q 
Sbjct: 326 GTKQE 330


>gi|326693745|ref|ZP_08230750.1| threonyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773]
          Length = 654

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVTHSK--PITSAELKSIEDNVND 641
           + HSA+HLL  AL  +        G      +G  +D  +     +T  +   IE  ++ 
Sbjct: 73  LRHSASHLLAQALKRLPKFANMHFGVGPFIENGFYYDTDNGAGNQVTVEDFAEIEAMMHK 132

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           I  ++LP+V+R ++R++A+A  A      +  +D     ++     G H   L  G  V 
Sbjct: 133 IAKEDLPIVSREVSRDEALAMFADDPYKVELISDLPEDATITIAVQGDH-VELDKGGLVP 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG +    + S   +     R
Sbjct: 192 STGWLKHFKLTS---VAGAYWR 210


>gi|160883804|ref|ZP_02064807.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|237722137|ref|ZP_04552618.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|299149166|ref|ZP_07042227.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
 gi|156110889|gb|EDO12634.1| hypothetical protein BACOVA_01776 [Bacteroides ovatus ATCC 8483]
 gi|229447947|gb|EEO53738.1| threonyl-tRNA synthetase [Bacteroides sp. 2_2_4]
 gi|298512833|gb|EFI36721.1| threonine--tRNA ligase [Bacteroides sp. 3_1_23]
          Length = 646

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKESDLPAIEAKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEDVVRKSIAKTDALKMFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + + S +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLTSVAGAYWRGHEDRKMLTRIYGIT 221


>gi|315604309|ref|ZP_07879375.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314015|gb|EFU62066.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 677

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 69/205 (33%), Gaps = 26/205 (12%)

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
           L    ++             + HSATH+L  A+  +        G  IT DG  +D  + 
Sbjct: 47  LEEGTTVEAITLESEDGLNILRHSATHVLAQAVQDVFPDVNLGIGPFIT-DGFYYDFGNI 105

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY------NDRVRV 678
             +T   L+ +E  +  II +    V R +  +DA    A      +             
Sbjct: 106 DAVTPELLRELEKRMKRIIKEGQRFVRREIGEDDARVELADQPYKLELVTTKGKGAEGAS 165

Query: 679 VSVEY----------EDGGVHSSALCGGTHVSSTGEIM-LLYIVSESS-------IRAGI 720
           V V             DG V    LC G H+ ST  I     +   S+           +
Sbjct: 166 VEVGAGSLTMYDNVRRDGTVAWKDLCRGPHLPSTNLIGNGFALTKSSAAYWKGDQNGDQL 225

Query: 721 RRIEAITGQRARSHLMGQDEKLKSL 745
           +RI   T   ++  L+   E++K  
Sbjct: 226 QRIYG-TAWASKEDLVAYQERIKEA 249


>gi|302024085|ref|ZP_07249296.1| threonyl-tRNA synthetase [Streptococcus suis 05HAS68]
 gi|330832440|ref|YP_004401265.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
 gi|329306663|gb|AEB81079.1| threonyl-tRNA synthetase [Streptococcus suis ST3]
          Length = 649

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 12/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + +L +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGKLIDTTRAIEEDGTLEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIKL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           +  I++ +L  I++ +  I+ +N P   R + +E+AI      
Sbjct: 93  GVGPAIQDGFYYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEAIEIF--- 149

Query: 667 LLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                Y   +     + E G           LC G HV STG I +  ++   ++     
Sbjct: 150 -KNDPYKLELIQEHSDDEGGLTIYTQGEYIDLCRGPHVPSTGRIQIFELL---NVAGAYW 205

Query: 722 R 722
           R
Sbjct: 206 R 206


>gi|15827147|ref|NP_301410.1| threonyl-tRNA synthetase [Mycobacterium leprae TN]
 gi|221229625|ref|YP_002503041.1| threonyl-tRNA synthetase [Mycobacterium leprae Br4923]
 gi|2501058|sp|O07151|SYT_MYCLE RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|254783529|sp|B8ZUG9|SYT_MYCLB RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2193902|emb|CAB09620.1| ThrS [Mycobacterium leprae]
 gi|13092695|emb|CAC29964.1| threonyl-tRNA synthetase [Mycobacterium leprae]
 gi|219932732|emb|CAR70549.1| threonyl-tRNA synthetase [Mycobacterium leprae Br4923]
          Length = 702

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  IT DG  +D   ++P T  +LK++E  +  I+ 
Sbjct: 94  IRHSTAHVLAQAVQDLFPQAKLGIGPPIT-DGFYYDFDVAEPFTPEDLKALEKRMRQIVK 152

Query: 645 QNLPVVTRIM-NREDAIASGAAALLGTKYNDRV----RVVSVEYEDGGVHSS-------- 691
           +      RI  ++E A    A      +  D       ++ V  ++   + +        
Sbjct: 153 EGQLFSRRIYESKEQARTEWAGEPYKLELVDDESGDAEIMEVGGDELTAYDNLNARNGER 212

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESS 715
               LC G H+ +T  I    +   S+
Sbjct: 213 IWGDLCRGPHIPTTKHIPAFKLTRSSA 239


>gi|302533417|ref|ZP_07285759.1| threonyl-tRNA synthetase [Streptomyces sp. C]
 gi|302442312|gb|EFL14128.1| threonyl-tRNA synthetase [Streptomyces sp. C]
          Length = 658

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  +  DG  +D   +KP T  +LK+IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPEAKLGIGPPV-RDGFYYDFDVAKPFTPDDLKTIEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYN---DRVRVVSVEYEDGGVHS------ 690
           +      R+++ E A            L+G K +   D    V V   +  ++       
Sbjct: 130 RGQKFARRVVSDEAAREELADEPYKLELIGIKGSASTDDGANVEVGGGELTIYDNLDAKT 189

Query: 691 -----SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                  LC G H+ +T  I    ++      A   R
Sbjct: 190 GELCWKDLCRGPHLPTTRNIPAFKLM---RNAAAYWR 223


>gi|255692010|ref|ZP_05415685.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
 gi|260622256|gb|EEX45127.1| threonine--tRNA ligase [Bacteroides finegoldii DSM 17565]
          Length = 646

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 17/190 (8%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A G+      + R I      ++   D +   + +  H++ HLL  AL  +        G
Sbjct: 37  ACGVNGETYDLGRPINEDADFVLYKWDDEE-GKHAFWHTSAHLLAEALQELYPGIQFGIG 95

Query: 610 SCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
             I  +G  +DV   + +    +L +IE  + ++ A+   VV   + + DA+        
Sbjct: 96  PAI-ENGFYYDVDPGEAVIKESDLPAIEAKMQELAAKKEDVVRESIAKADALKMFGDR-- 152

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------R 717
           G  Y   + +  +E      ++      LC G H+ +T  I  + + + +         R
Sbjct: 153 GETYKCEL-ISELEDGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTTVAGAYWRGQEDR 211

Query: 718 AGIRRIEAIT 727
             + RI  IT
Sbjct: 212 KMLTRIYGIT 221


>gi|163802478|ref|ZP_02196371.1| hypothetical protein 1103602000590_AND4_19512 [Vibrio sp. AND4]
 gi|159173779|gb|EDP58594.1| hypothetical protein AND4_19512 [Vibrio sp. AND4]
          Length = 289

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 85/256 (33%), Gaps = 65/256 (25%)

Query: 512 EVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQK 548
            V+ + TPF+  +        D G     G+  ++ D                    V++
Sbjct: 32  YVLTEVTPFHPVSHIWPDHPADKGTLTVKGVSFEVIDCQVGAVELASGALHVGAAIPVKR 91

Query: 549 KAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
            +EG    V H +     +     + L +D + +  LS  HSA H+ + AL+ +L  +  
Sbjct: 92  DSEGWAFVVVHVLARNETIVVGDVVFLEVDKEYQLSLSRGHSAGHIAYLALNKVLAQNYW 151

Query: 607 -------------------QNGSCITPDGLRFDVTHSKPITS---------AELKSIEDN 638
                              Q  S +TPD         K I           ++LK IE  
Sbjct: 152 RKDADRKDPHGNYDFNSYAQETSFVTPDKCLDTYRLGKTIRKRGLNSADMLSDLKIIEQQ 211

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VN ++          + R+ AI        G    D  R    +  +G V     CGGTH
Sbjct: 212 VNLLLED-------WLKRDAAITIDC---HGEHLTD-SRYWQCDLGEGEVAII-PCGGTH 259

Query: 699 VSSTGEIMLLYIVSES 714
            S   +   +++    
Sbjct: 260 ASHLSDFGSIHVTLVE 275


>gi|317057674|ref|YP_004106141.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
 gi|315449943|gb|ADU23507.1| threonyl-tRNA synthetase [Ruminococcus albus 7]
          Length = 648

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 26/174 (14%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+HLL  A+  +        G   T +G  +D    KP   A+L+ I+  +  +  + 
Sbjct: 73  HTASHLLAQAVKNLYPDAKLGRGPA-TENGFYYDFKVEKPFAPADLEKIQAEMKKLAKEG 131

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS---------SALCGGT 697
             +    ++R++A+      L+  K  +  +V  ++  D                LC G 
Sbjct: 132 FELERFELSRDEAVK-----LMEEK-GENFKVELIDKHDSKGEKLSFYKQGDFVDLCAGP 185

Query: 698 HVSSTGEIMLLYIVSESSIRAG-------IRRIEAITGQRA---RSHLMGQDEK 741
           H+ S   I  + +   +    G       + RI      +A     HL   +E 
Sbjct: 186 HIMSVAPIKAIKLTQCTGAYWGKAEDGIQMSRIYGTAYPKASMLEEHLKQMEEA 239


>gi|296087472|emb|CBI34061.3| unnamed protein product [Vitis vinifera]
          Length = 91

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347
            NEGR YVLRRI+ R + Y   +L   E     L+  +   MG  +PEL Q ++ I
Sbjct: 34  GNEGREYVLRRILHRDVRYGSEVLKAQEGFFNSLINIVVKVMGDVFPELKQHEVHI 89


>gi|297620271|ref|YP_003708408.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
 gi|297375572|gb|ADI37402.1| Threonyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044]
          Length = 642

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +V         +    H++ H+L  A+  I        G  I   G  +D   
Sbjct: 49  PLNDGDLVVFWSFDDREGKEIFWHTSAHVLAQAVLRIYPDAKPTIGPPIET-GFYYDFA- 106

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYND--RVRVVS 680
              I+  + + IE+ +  I+ +N      + N + +A +S A+     +  D        
Sbjct: 107 DLSISENDFEKIENEMKKIVKENYQSEREVFNTKNEAKSSFASNPYKCEMIDGFSEEEEL 166

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             Y  G      LC G H+ + G+I    +   S 
Sbjct: 167 SGYRQGEFFD--LCRGPHLPNLGKIKAFKLTKTSG 199


>gi|227826811|ref|YP_002828590.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.14.25]
 gi|229583993|ref|YP_002842494.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.27]
 gi|238618935|ref|YP_002913760.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.4]
 gi|227458606|gb|ACP37292.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.14.25]
 gi|228019042|gb|ACP54449.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.27]
 gi|238380004|gb|ACR41092.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus M.16.4]
          Length = 150

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H++  A+  +LG+      + +  +  R  V   +  +  E+  + +  N+ + 
Sbjct: 7   RTHTALHVVKGAVRKVLGAK-WTASTYVNSNHGRLTVKFERKPSDEEMDKVFELANEKVR 65

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +NLP++  ++ RE+A       +    +     V  +        +   C   H  +T E
Sbjct: 66  KNLPIIIEVLPREEAERKYGDEIYDL-FLIPAEVRELSIVVIPDWNINACNKQHTKTTSE 124

Query: 705 IMLL 708
           I  +
Sbjct: 125 IGEI 128


>gi|88942337|sp|Q7UJ52|SYT_RHOBA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|327537946|gb|EGF24643.1| threonyl-tRNA synthetase [Rhodopirellula baltica WH47]
          Length = 743

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA H++  A+  I    VS      T  G  +D    + I+  +   IE  +  II 
Sbjct: 92  LRHSAAHVMARAIMRIY-KGVSLAFGPTTSGGFYYDFDMPEKISEDDFPKIEAEIKKIIK 150

Query: 645 QNLPVVTRIMNREDAIASG-------AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
              P    ++ R++A               + T   D+  V    Y  G      LC G 
Sbjct: 151 AKEPFERFVLERDEARKLCDDLDQDLKVEHIETGLGDQATVSF--YRQGEF--VDLCRGP 206

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
           H+   G I  + ++S   +     + +A   Q  R +     +K K LAS+L
Sbjct: 207 HIPHAGMIKAIKLLS---VAGAYWKGDASGRQLQRVYGTAFFDK-KELASYL 254


>gi|307326749|ref|ZP_07605941.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887512|gb|EFN18506.1| threonyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 659

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 24/158 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I  DG  +D     P    +LK IE  + +I  
Sbjct: 71  LRHSTAHVMAQAVQELFPDAKLGIGPPI-KDGFYYDFDVETPFHPDDLKRIEKKMQEIQK 129

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKY---------------NDRVRVVSVEYE 684
           +      R +  ++A            L+G K                 +     +++ +
Sbjct: 130 RGQRFSRRAVTDDEAREELSAEPYKLELIGLKGSAADAAEGASAEVGAGELTIYDNLDAK 189

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            G +    LC G H+ +T  I    ++      A   R
Sbjct: 190 SGELCWKDLCRGPHLPTTRNIPAFKLM---RSAAAYWR 224


>gi|153808043|ref|ZP_01960711.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
 gi|149129652|gb|EDM20866.1| hypothetical protein BACCAC_02329 [Bacteroides caccae ATCC 43185]
          Length = 646

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 17/190 (8%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A G+      + R I      ++   D +   + +  H++ HLL  AL  +        G
Sbjct: 37  ACGVNGETYDLGRPINEDADFVLYKWDDEE-GKHAFWHTSAHLLAEALQELYPGIQFGIG 95

Query: 610 SCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
             I  +G  +DV   + +    +L +IE  + ++ A+   VV + + + DA+        
Sbjct: 96  PAI-ENGFYYDVDPGEAVIKESDLPAIEAKMLELSAKKEAVVRKSIAKTDALKMFGDR-- 152

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------R 717
           G  Y   + +  +E      ++      LC G H+ +T  I  + + S +         R
Sbjct: 153 GETYKCEL-ISELEDGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTSVAGAYWRGHEDR 211

Query: 718 AGIRRIEAIT 727
             + RI  IT
Sbjct: 212 KMLTRIYGIT 221


>gi|269795047|ref|YP_003314502.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Sanguibacter
           keddieii DSM 10542]
 gi|269097232|gb|ACZ21668.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Sanguibacter
           keddieii DSM 10542]
          Length = 676

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 22/163 (13%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                  +  +TID  +   +   HSA H+L  A+  +  +     G  IT DG  +D  
Sbjct: 56  TFTEGDVVEPVTIDSPDGLDVLR-HSAAHVLAQAVQQVNPTAKLGIGPPIT-DGFYYDFD 113

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-----ASGAAALLGTKYN---- 673
            ++P T  +LK++E  +  I+ +      R++   +A+           L+G K +    
Sbjct: 114 VAEPFTPEDLKALEKAMMRIVKEGQTFRRRVVTEAEALVDLADEPYKIELVGLKGSSDTA 173

Query: 674 DRVRVVSVEYEDGGVH----------SSALCGGTHVSSTGEIM 706
                V V   +  ++             LC G H+ ST  I 
Sbjct: 174 GEGASVEVGAGELSIYQNVRRNGDVAWEDLCRGPHLPSTRLIG 216


>gi|322819645|gb|EFZ26679.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 9/154 (5%)

Query: 567 TEMSLVLTIDYQN-RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
              + +  +D+ +   +    HS++H+L +AL  +  + +S  G  +   G  ++    +
Sbjct: 114 EGDATLELLDWDDPEARHVFWHSSSHVLGYALERVFHTRLSV-GPALEEGGFFYEGDTGR 172

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P++  + KSIE  + +++   +P     +++ DA+         +K    +     E   
Sbjct: 173 PLSETDYKSIEIAMQELVKMKMPYQRLTVSKADALRLFGYTEFKSKI---LASKVPENGF 229

Query: 686 GGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             V+        C G H+  TG +    +   SS
Sbjct: 230 CTVYRCGHLIDPCRGPHLPDTGRVKAFAVTKNSS 263


>gi|325188237|emb|CCA22777.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 756

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
           ++   HS+ H+L  A+  + G  ++  G  +           +     +E   +E     
Sbjct: 186 RMVFWHSSAHILGEAMEQLKGCFLTI-GPPVEGGFYYDAFMGNIAWQESEWSVLEKTCQK 244

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           I+ +N      ++ RE+A+   A  +  T+    +     E      +       LC G 
Sbjct: 245 IVKENQNFERLVLTREEALELFADNVFKTQL---IATKIPEGGKTTAYRCGSLIDLCRGP 301

Query: 698 HVSSTGEIMLLYIVSESS 715
           HV STG +  L I   SS
Sbjct: 302 HVPSTGRVKALAITKTSS 319


>gi|71418959|ref|XP_811024.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70875641|gb|EAN89173.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 816

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 9/154 (5%)

Query: 567 TEMSLVLTIDYQN-RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
              + +  +D+ +   +    HS++H+L +AL  +  + +S  G  +   G  ++    +
Sbjct: 114 EGDATLELLDWDDPEARHVFWHSSSHVLGYALERVFHTRLSV-GPALEEGGFFYEGDTGR 172

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P++  + KSIE  + +++   +P     +++ DA+         +K    +     E   
Sbjct: 173 PLSETDYKSIEIAMQELVKMKMPYQRLTVSKADALRLFGYTEFKSKI---LASKVPENGF 229

Query: 686 GGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             V+        C G H+  TG +    +   SS
Sbjct: 230 CTVYRCGHLIDPCRGPHLPDTGRVKAFAVTKNSS 263


>gi|227432351|ref|ZP_03914343.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351872|gb|EEJ42106.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 652

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVND 641
           + HSA+HLL  AL  I    ++         +G  +D  +     ++  +   IE  ++ 
Sbjct: 73  LRHSASHLLAQALKRIPKFANIHFGVGPFIENGFYYDTDNGAGNQVSIEDFPEIEAIMHK 132

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           I+ ++LP+++R + R++A+   A      +  ND      +     G H   L  G  V 
Sbjct: 133 IVKEDLPILSREITRDEALELFADDPYKVELVNDLPVDEKITIAVQGDHI-ELDKGGLVP 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG I    + S   +     R
Sbjct: 192 STGWIKHFKLTS---VAGAYWR 210


>gi|288928013|ref|ZP_06421860.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330847|gb|EFC69431.1| threonine--tRNA ligase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 654

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 12/149 (8%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVN 640
            +  HS+ HLL  AL  +        G  +  +G  +DV      PI+  +   IE+ + 
Sbjct: 69  HTFWHSSAHLLAEALQALYPGIQFGFGPAV-ENGFFYDVMTKDGTPISENDFPKIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           +   ++  +V R +++ DA+        G +Y      + +E      +S      LC G
Sbjct: 128 EFAKRDEAIVRREVSKSDALKEFKED--GQEYKCEHIDLDLEDGTISTYSQGAFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            H+ S      +  +  +S+     R +A
Sbjct: 186 PHLMS---TGPIKAIKLTSVAGAFWRGDA 211


>gi|116617774|ref|YP_818145.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122272025|sp|Q03YF0|SYT_LEUMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116096621|gb|ABJ61772.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 652

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVND 641
           + HSA+HLL  AL  I    ++         +G  +D  +     ++  +   IE  ++ 
Sbjct: 73  LRHSASHLLAQALKRIPKFANIHFGVGPFIENGFYYDTDNGAGNQVSIEDFPEIEAIMHK 132

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           I+ ++LP+++R + R++A+   A      +  ND      +     G H   L  G  V 
Sbjct: 133 IVKEDLPILSREITRDEALEIFADDPYKVELVNDLPVDEKITIAVQGDHI-ELDKGGLVP 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           STG I    + S   +     R
Sbjct: 192 STGWIKHFKLTS---VAGAYWR 210


>gi|15618715|ref|NP_225001.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae CWL029]
 gi|15836339|ref|NP_300863.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|16752234|ref|NP_445602.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|33242166|ref|NP_877107.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
 gi|8928382|sp|Q9Z7A0|SYT_CHLPN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|4377117|gb|AAD18944.1| Threonyl tRNA Synthetase [Chlamydophila pneumoniae CWL029]
 gi|7189978|gb|AAF38837.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae AR39]
 gi|8979180|dbj|BAA99014.1| threonyl tRNA synthetase [Chlamydophila pneumoniae J138]
 gi|33236677|gb|AAP98764.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae TW-183]
          Length = 635

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 23/194 (11%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      H++ HLL  A+  +    +   G  I   G  +D   +  I+ ++   I
Sbjct: 61  DPEGRE--IFLHTSAHLLAQAVLRLWPDAIPTIGPVID-HGFYYDFA-NLSISESDFPLI 116

Query: 636 EDNVNDIIAQNLPVVTRIM-NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--- 691
           ED V  I+ + L +      +++ A+A        T     +     E E+   +S    
Sbjct: 117 EDTVKQIVDEKLAISRFTYGDKQQALAQFPQNPFKT----ELIRELPENEEISAYSQGEF 172

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIE---AITGQRARSHLMGQDE 740
             LC G H+ ST  +    ++  S+        R  + RI      T +  R+HL   +E
Sbjct: 173 FDLCRGPHLPSTAHVKAFKVLRTSAAYWRGDPSRESLVRIYGTSFPTSKELRAHLEQIEE 232

Query: 741 KLKSLASFLKVSQG 754
             K     L     
Sbjct: 233 AKKRDHRVLGAKLD 246


>gi|302391179|ref|YP_003826999.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203256|gb|ADL11934.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Acetohalobium
           arabaticum DSM 5501]
          Length = 639

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 83/213 (38%), Gaps = 26/213 (12%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILG-SHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++TID +   ++   HS  H++  A+  I G   V         DG  +D    +  +  
Sbjct: 61  IITIDSEEGLEI-YRHSMAHIMAQAVERIYGSDEVQLAIGPSIEDGFYYDFDIPENFSDN 119

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDG 686
           +L+ IE  + +II ++L +    +++++A+       LG  Y     + +   +V +   
Sbjct: 120 DLEEIEAEMQEIIEEDLEIERIELSKKEAVEK--MKDLGEDYKVEMLEELEDDAVSFYQQ 177

Query: 687 GVHSSALCGGTHVSST--GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           G     LC G H++ST         ++   ++     R                ++ L+ 
Sbjct: 178 GDFID-LCRGPHLTSTGKANAEGFKLL---NVAGAYWR------------GDEDNKMLQR 221

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           +      ++ ++   ++ + E  ++      ++
Sbjct: 222 IYGTAFPNKSDLEEHLDRLEEAKKRDHRKLGQK 254


>gi|260911583|ref|ZP_05918168.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634289|gb|EEX52394.1| threonine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 654

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 12/149 (8%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV--THSKPITSAELKSIEDNVN 640
            +  HS+ HLL  AL  +        G  +  +G  +DV      PI+  +   IE+ + 
Sbjct: 69  HTFWHSSAHLLAEALQALYPGIQFGFGPAV-ENGFFYDVMTKDGTPISENDFPKIEEKMR 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           +   ++  +V R +++ DA+    A   G +Y      + +E      +S      LC G
Sbjct: 128 EFAKRDEAIVRREVSKADALKEFKAD--GQEYKCEHIDLDLEDGTISTYSQGAFTDLCRG 185

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEA 725
            H+ +      +  +  +S+     R +A
Sbjct: 186 PHLMT---TGPIKAIKLTSVAGAFWRGDA 211


>gi|308189939|ref|YP_003922870.1| threonine--tRNA ligase [Mycoplasma fermentans JER]
 gi|319777220|ref|YP_004136871.1| threonyl-tRNA synthetase [Mycoplasma fermentans M64]
 gi|238809889|dbj|BAH69679.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624681|gb|ADN68986.1| threonine--tRNA ligase [Mycoplasma fermentans JER]
 gi|318038295|gb|ADV34494.1| Threonyl-tRNA synthetase [Mycoplasma fermentans M64]
          Length = 582

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 10/143 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ +HLL  A+  +        G   T +G  +D    +P++  EL  IE  +  + +
Sbjct: 9   LNHTTSHLLGAAVEKLYPEVKLGFGPA-TEEGFYYDFEFKEPLSVNELSKIEKLMKKLAS 67

Query: 645 QNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHV 699
           +NL V  +I  ++ D         L  +   + + ++           +    LC G HV
Sbjct: 68  RNL-VTIQIPEKDYDFKNKPYKKELYDELKAQGKKITFYALQDPLNKEIIFKDLCAGGHV 126

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            ST  I    ++S   I     R
Sbjct: 127 ESTKVIKNFKLLS---IAGAYWR 146


>gi|13924477|gb|AAK49025.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002]
          Length = 73

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 830 ISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887
             ++ K S++   +E +    +  A       AK+ GGGGG GRP++AQ+GG + +K  +
Sbjct: 1   TPEDGKVSLVAAFSEGIYKGKKVQAGKFIGGIAKLCGGGGG-GRPNLAQAGGRDASKLPE 59

Query: 888 AIAGVASFLKK 898
           A+      L++
Sbjct: 60  ALHTAKQQLRE 70


>gi|255325106|ref|ZP_05366212.1| threonine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297671|gb|EET76982.1| threonine--tRNA ligase [Corynebacterium tuberculostearicum SK141]
          Length = 687

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 59/189 (31%), Gaps = 30/189 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+           G  I  +G  FD   ++P T  +LK+IE  +  II 
Sbjct: 77  IRHSCGHVMAQAVQAEFPGTKLGIGPAI-ENGFYFDFQTAEPFTPEDLKAIEKRMKKIIK 135

Query: 645 QNLPVVTRIMN---------------REDAIASGAAALLGTK-----YNDRVRVVSVEYE 684
                   +                  E     G       +       D     ++   
Sbjct: 136 GGQRFERHVYESAEEAEKALAEEPFKLELVQDKGNVDPDSDEAAEVGSGDLTHYDNINPR 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHL 735
            G V    LC G HV +T  I    +   S+        +AG++RI       + A    
Sbjct: 196 TGEVEWFDLCRGPHVPTTKYIPAFTLTRSSAAYWRGDQSKAGLQRIYGTAFESKEALEAY 255

Query: 736 MGQDEKLKS 744
               E+ + 
Sbjct: 256 QTMVEEAEK 264


>gi|311739567|ref|ZP_07713402.1| threonine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311305383|gb|EFQ81451.1| threonine--tRNA ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 687

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 59/189 (31%), Gaps = 30/189 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+           G  I  +G  FD   ++P T  +LK+IE  +  II 
Sbjct: 77  IRHSCGHVMAQAVQAEFPGTKLGIGPAI-ENGFYFDFQTAEPFTPEDLKAIEKRMKKIIK 135

Query: 645 QNLPVVTRIMN---------------REDAIASGAAALLGTK-----YNDRVRVVSVEYE 684
                   +                  E     G       +       D     ++   
Sbjct: 136 GGQRFERHVYESAEEAEKALAEEPFKLELVQDKGNVDPDSDEAAEVGSGDLTHYDNINPR 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHL 735
            G V    LC G HV +T  I    +   S+        +AG++RI       + A    
Sbjct: 196 TGEVEWFDLCRGPHVPTTKYIPAFTLTRSSAAYWRGDQSKAGLQRIYGTAFESKEALEAY 255

Query: 736 MGQDEKLKS 744
               E+ + 
Sbjct: 256 QTMVEEAEK 264


>gi|284991611|ref|YP_003410165.1| threonyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284064856|gb|ADB75794.1| threonyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 690

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  +  +G  +D    +P T  +L+++E  + +I+ 
Sbjct: 76  IRHSTAHVLAQAVQDLFPGTRLGIGPPV-ENGFYYDFAPERPFTPEDLEALEKRMQEIVK 134

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVH---------- 689
                  R ++  DA A          L+G K          + E GG            
Sbjct: 135 AGQYFSRREISDADAQAELAHEPFKLELIGLKGGAGEAAEGADVEVGGAQLTMYDNLDPR 194

Query: 690 -----SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
                 + LC G H+  T  I      S +   A   R      Q  R +    + +   
Sbjct: 195 SGDRVWTDLCRGPHLPRTSNIPAF---SLTRSAAAYWRGSEKNPQLQRVYGTAWESREAH 251

Query: 745 LASFLKVSQGN 755
            A   +V++  
Sbjct: 252 KAHLEQVAEAE 262


>gi|224534482|ref|ZP_03675058.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
 gi|224514159|gb|EEF84477.1| threonine--tRNA ligase [Borrelia spielmanii A14S]
          Length = 581

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE  + +I+ 
Sbjct: 14  KRHSIAHVMAEAVCDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDALLDIEKRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   +++ E A+                D    +S+      V    LC G HV +
Sbjct: 73  TGSSFEKELISVEQALEIFKDEPYKIDLIKNFDLQNEISIYKSHNFVD---LCRGPHVDN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GNEKNTMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|281210705|gb|EFA84871.1| putative alanyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 249

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVNDIIAQ 645
           +A H+L  A+  +L + ++ +  C      R  V ++      +  L+ IED  N II +
Sbjct: 15  TACHVLKGAIVKVLNTPITVSVECQNKVKGRVCVEYTLDDKPDDSTLQKIEDECNRIIKE 74

Query: 646 NLPVVTRIMNREDAIASGAAAL-----LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           NLP+    M+R++A A           +  K+     V ++   +    +   C   H+ 
Sbjct: 75  NLPLNAFSMDRKEAEAKYTKEKVNNTYIYDKFPVPESVTTLTLVEIAGWNINCCPAVHLK 134

Query: 701 STGEIMLLYI 710
           STGE+  + I
Sbjct: 135 STGELGGIKI 144


>gi|325679048|ref|ZP_08158642.1| threonine--tRNA ligase [Ruminococcus albus 8]
 gi|324109172|gb|EGC03394.1| threonine--tRNA ligase [Ruminococcus albus 8]
          Length = 648

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 20/171 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           H+A+HL+  A+  +        G   T +G  +D    KP   A+L+ I+  +  +  + 
Sbjct: 73  HTASHLMAQAVKNLYPDAKLGRGPA-TENGFYYDFQVEKPFAPADLEKIQAEMKRLAKEG 131

Query: 647 LPVVTRIMNREDAIASGAAA------LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +    ++ ++A+             L  K++ +   +S  Y  G      LC G H+ 
Sbjct: 132 YELERFELSHDEAVKLMQEKNEDFKLELIEKHDSKGEKLSF-YRQGDF--VDLCAGPHIM 188

Query: 701 STGEIMLLYIVS-----ESSIRAGIR--RIEAITGQRA---RSHLMGQDEK 741
           S   I  + +          +  GI+  RI      +A     HL   +E 
Sbjct: 189 SVAPIKAVKLTQCTGAYWGKVEDGIQMSRIYGTAYPKASMLEEHLKQMEEA 239


>gi|184201017|ref|YP_001855224.1| threonyl-tRNA synthetase [Kocuria rhizophila DC2201]
 gi|183581247|dbj|BAG29718.1| threonyl-tRNA synthetase [Kocuria rhizophila DC2201]
          Length = 718

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 26/168 (15%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L     +   +  +      + HS  H++  A+  +        G  IT DG  FD   
Sbjct: 49  PLADGDVVERVLVSEPEGLEVLRHSTAHVMAQAVQQLRPDAKLGIGPYIT-DGFYFDFDV 107

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND--------- 674
           ++P T  +LK++E ++  I+ +N     R +  ++A A  A      +  D         
Sbjct: 108 AEPFTPEDLKALEKSMLKIVNRNQIFRRRTVTEDEARAEMADEPYKLELIDLAGGPGSGA 167

Query: 675 -----RVRVVSVEYEDGGVHSS-----------ALCGGTHVSSTGEIM 706
                    V V   +  V+ +            LC G H+  T  I 
Sbjct: 168 VDESAEGASVEVGGGELTVYDNVDRKSGDVVWRDLCRGPHLPDTKHIG 215


>gi|118475741|ref|YP_892822.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414967|gb|ABK83387.1| threonyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40]
          Length = 617

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV----THSKPITSAELKSIEDNVN 640
           I HS  HL+  A+  +  +     G CI  DG  +D+    +  + +  ++L+ IE  + 
Sbjct: 51  IRHSCAHLMAAAIKELYPNAKFFVGPCI-EDGFYYDMRVSKSDGEKLGESDLEEIEKKMK 109

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           ++    + +V     + +  A  A+  L  +   R+    V     G     +C G HV 
Sbjct: 110 ELALAKIDIVKFNSTKSEVAAKYASDDLKQEVLKRIPDGVVSLYSQGNF-EDICRGPHVP 168

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T       +           RI       A        E L  +       + ++   +
Sbjct: 169 NTIFTRFFKLT----------RI-----AGAYLGGDENREMLTRIYGTAYADKESLKEHI 213

Query: 761 EEIWEEYRK 769
             I EE +K
Sbjct: 214 -HIIEEAKK 221


>gi|213966110|ref|ZP_03394297.1| threonyl-tRNA synthetase [Corynebacterium amycolatum SK46]
 gi|213951208|gb|EEB62603.1| threonyl-tRNA synthetase [Corynebacterium amycolatum SK46]
          Length = 686

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 42/191 (21%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSATH++  A+           G  I  +G  +D    +P +  +LK IE  +  II 
Sbjct: 73  IRHSATHVMAQAVQLEFPGTKLGIGPAID-NGFYYDFRVDEPFSPEDLKRIEKRMKKIIK 131

Query: 645 QNLPVVTR-IMNREDAIASGAAALLGTKYNDRVRV------------------------- 678
                      + ++A      AL    Y   + V                         
Sbjct: 132 SGQRFERFAFESADEAQE----ALADEPYKLELIVEKSAGKVSEDDEANVDVGGAGTTLT 187

Query: 679 --VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT-- 727
              +V    G      LC G HV +T  I    I   S+        R  ++R+      
Sbjct: 188 GYRNVNPRTGETEWFDLCRGPHVPTTRYIPAFKITRSSAAYWRGDQSRDNLQRVYGTAWE 247

Query: 728 GQRARSHLMGQ 738
            + A    + +
Sbjct: 248 SKEALDEYLDR 258


>gi|223932680|ref|ZP_03624679.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
 gi|223898650|gb|EEF65012.1| threonyl-tRNA synthetase [Streptococcus suis 89/1591]
          Length = 650

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 12/181 (6%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + +L +           + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGKLIDTTRAIEEDGTLEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIKL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           +  I++ +L  I++ +  I+ +N P   R + +E+A+      
Sbjct: 93  GVGPAIQDGFYYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALDIF--- 149

Query: 667 LLGTKYNDRVRVVSVEYEDG-----GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721
                Y   +     + E G           LC G HV STG I +  ++   ++     
Sbjct: 150 -KNDPYKLELIQEHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELL---NVAGAYW 205

Query: 722 R 722
           R
Sbjct: 206 R 206


>gi|288801328|ref|ZP_06406782.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331711|gb|EFC70195.1| threonine--tRNA ligase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 654

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVNDIIA 644
           HS+ HLL  AL  +        G  I  +G  +DV     ++ +E     IE+ + ++  
Sbjct: 73  HSSAHLLAEALQELYPGIQFGFGPAI-ENGFFYDVMTKDGVSISENDFPKIEEKMRELAK 131

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +N P+V + +++ DA+   +A   G +Y      + +E      ++      LC G H+ 
Sbjct: 132 KNEPIVRKDISKADALKEFSAD--GQEYKCEHIDLDLEDGTISTYTQGAFTDLCRGPHLM 189

Query: 701 STGEIMLLYIVSESSIRAGIRRIEA 725
           S      +  +  +S+     R +A
Sbjct: 190 S---TGAIKAIKLTSVAGAFWRGDA 211


>gi|149190085|ref|ZP_01868362.1| hypothetical protein VSAK1_12035 [Vibrio shilonii AK1]
 gi|148836115|gb|EDL53075.1| hypothetical protein VSAK1_12035 [Vibrio shilonii AK1]
          Length = 287

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 52/248 (20%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
              ++V D TPF+  +        D G  + +G +L++ D                    
Sbjct: 28  DYTDIVVDSTPFHPVSHIWPDHPADKGYLLAEGQQLEVIDCLVGAIELDTKTLYVGSAIP 87

Query: 546 VQKKAEGIF--VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  +G    V H I +   L     + L +D   ++ LS  HSA H+   AL+ +L +
Sbjct: 88  VKRDCDGWVFVVVHRIAKGPELCVGQVITLEVDKAYQQSLSRGHSAGHIASLALNKVLAA 147

Query: 604 HVSQNG-------------------SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
              +                     S ++P+         K +    L ++E      + 
Sbjct: 148 SYWRKEADRKDGLAHYDFNSYAQEQSVVSPNRCFDRYRLGKTLKKRGLNTVE------VL 201

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSALCGGTHVSST 702
            +L  +  + N++ A  S   + +  +        S  +     GV     CGGTH++  
Sbjct: 202 TDLQRIEDMTNQQLAEWSQEPSEVSMQLEGPFLTSSRYWHCTLDGVDVVMPCGGTHINHM 261

Query: 703 GEIMLLYI 710
            E++ L +
Sbjct: 262 DELINLRV 269


>gi|225461914|ref|XP_002265484.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 745

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNVN 640
           + +  HS+ H+L  AL    G  +         +G  +D  + +   + +  K IE  V 
Sbjct: 178 RDTFWHSSAHILGQALEMEYGCKLCIGPCTTRGEGFYYDAFYGELGLNEDHFKQIESGVL 237

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             + +  P     ++R  A+   +         ND     ++     G     LC G H+
Sbjct: 238 KAVGEKQPFERIEVSRNQALEMFSENSFKIEIINDLPEDKTITVYRCGP-LVDLCRGPHI 296

Query: 700 SSTGEIMLLYIVSESS-IRAGIR------RIEAIT---GQRARSHLMGQDEKLKSLASFL 749
            +T  +     +  SS    G R      R+  I+    +R + ++   +E  K     L
Sbjct: 297 PNTSFVKAFACLKASSAYWRGNRDRESLQRVYGISYPDSKRLKEYIARIEEAKKYDHRLL 356

Query: 750 KVSQG 754
            V Q 
Sbjct: 357 GVKQE 361


>gi|320093816|ref|ZP_08025661.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979249|gb|EFW10747.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 669

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 28/207 (13%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     +    +D  +   +   HSATH+L  A+  +        G  IT DG  +D  
Sbjct: 46  ELEAGTRVEAIALDSPDGLDILR-HSATHVLAQAVQDVFPDVDLGIGPFIT-DGFYYDFG 103

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY------NDRV 676
           +   +T   L+ +E  +  I+ +    V R ++ ++A    A      +           
Sbjct: 104 NIDAVTPELLRDLEKRMKRIVKEGQRFVRREISEDEARLELADQPYKLELVTTKGKGAEG 163

Query: 677 RVVSVEY----------EDGGVHSSALCGGTHVSSTGEIM-LLYIVSESS-------IRA 718
             V V             DG V    LC G H+ ST  I     +   S+          
Sbjct: 164 ASVEVGGGGLTMYDNVRRDGTVAWKDLCRGPHLPSTKLIGNGFALTKSSAAYWKGDQNGD 223

Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSL 745
            ++RI   T   ++  L+   E+LK  
Sbjct: 224 QLQRIYG-TAWASKDDLVAYQERLKEA 249


>gi|256832610|ref|YP_003161337.1| threonyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
 gi|256686141|gb|ACV09034.1| threonyl-tRNA synthetase [Jonesia denitrificans DSM 20603]
          Length = 673

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 42/214 (19%)

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS-INHSATHL 592
                  + +  V  + + +F          +     +   +D      L+ + HSA H+
Sbjct: 31  LFSANKNIVVLRVNGELKDLFY--------RVAAGDVVDG-VDINEPDGLNVLRHSAAHV 81

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  A+  +        G  I  DG  +D     P    +LK +E  +  I+ +      R
Sbjct: 82  LAQAVQKVNPDAKLGIGPPI-VDGFYYDFDVETPFAPEDLKKLEKEMMRIVKEGQTFQRR 140

Query: 653 IMNREDAIASGAAALLGTKYN-------------DRVRVVSVEYEDGGVHSS-------- 691
           ++  E     G   L G  Y                   V V   +  ++ +        
Sbjct: 141 VITEEQ----GHTELAGEPYKIELISLKSQSDTAAEGASVEVGAGELTIYDNVRRNGEVA 196

Query: 692 --ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
              LC G H+ ST  I     ++      A   R
Sbjct: 197 WGDLCRGPHLPSTKLIGNGFKLM---RSAAAYWR 227


>gi|239618448|ref|YP_002941770.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|259516548|sp|C5CI64|SYT_KOSOT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|239507279|gb|ACR80766.1| threonyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 648

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 23/211 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG-SCITPDGLRFDVT 622
            L  E  + L ++   R      H+ +H+L  A+  I GS   + G   +  +G  +D  
Sbjct: 51  ELPEECKINLILEKDPRAPEFFRHTFSHILAQAVMRIYGSDKVKLGIGPVIENGFYYDFD 110

Query: 623 H-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRV 678
                +T  +L  IE+ +  II ++L +    + +E+AI          K     D    
Sbjct: 111 LGDIRLTEEDLPKIEEEMEKIIKEDLKLERFELPKEEAIKLMKDQNQPYKVELIEDLESD 170

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738
           V+  Y  G      LC G H+ STG++    ++S S                A      +
Sbjct: 171 VATFYRQGEF--VDLCRGPHMPSTGKVKYFKLLSVSG---------------AYWRGDER 213

Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           ++ L+ +       +  +   + ++ EE +K
Sbjct: 214 NKMLQRIYGTAFAKKSELEAYL-KMMEEAKK 243


>gi|296110556|ref|YP_003620937.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
 gi|295832087|gb|ADG39968.1| threonyl-tRNA synthetase [Leuconostoc kimchii IMSNU 11154]
          Length = 654

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK---PITSAELKSIEDNVND 641
           + HSA+HLL  AL  I        G     D   +  T +     ++  +   IE  ++ 
Sbjct: 73  LRHSASHLLAQALKRIPKFSNMHFGVGPFIDNGFYYDTDNGIGNQVSVEDFPEIEAMMHK 132

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           I+ ++LP+V+R + RE+A+   A+         D      +     G H   L  G  V 
Sbjct: 133 IVKEDLPIVSRQVTREEALEMFASDPYKIELITDLPVDEKITIAIQGDH-VELDKGGLVP 191

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  +    + S   +     R
Sbjct: 192 STRWVKNFKLTS---VAGAYWR 210


>gi|119358269|ref|YP_912913.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355618|gb|ABL66489.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 675

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 26/159 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+  A+  +        G  I   G  +D+         +L++IE  + +I  + 
Sbjct: 97  HSSSHLMAQAIEELFAGTRFGAGPAI-EQGFYYDIASDHRFREEDLRAIELRMIEISKRE 155

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----------YEDGGVHSSALCG 695
             +  R M+RE+AI         T  ND  +V  +E           YE        LC 
Sbjct: 156 SQINRREMSREEAIE-----FFKTVRNDPYKVEILEDTLKNTPVVSLYEQENFTD--LCS 208

Query: 696 GTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT 727
           G H+ ST +I  + + + S       S R  ++RI  IT
Sbjct: 209 GPHLHSTSKIKAVQLTNISTSYWRGDSSRESMQRIYGIT 247


>gi|160902301|ref|YP_001567882.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
 gi|189083616|sp|A9BHF0|SYT_PETMO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|160359945|gb|ABX31559.1| threonyl-tRNA synthetase [Petrotoga mobilis SJ95]
          Length = 640

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 585 INHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
             H+  H++  A++ I G   V      +  +G  +D       ++  +   IE+ +  I
Sbjct: 71  YRHTMAHIMAQAVARIFGEDRVKLAIGPVIENGFYYDFDIEGHNLSEEDFSKIEEEMKKI 130

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           I +++ ++ + +N+++AI          +  + +   ++     G     LC G H+ ST
Sbjct: 131 IKEDIKIIRKEVNKKEAIELFKDQPYKLELIEELEEDTISVYFQGDFYD-LCRGPHLPST 189

Query: 703 GEIMLLYIVSESS 715
           G +    ++S S 
Sbjct: 190 GYVKYFKLLSVSG 202


>gi|330800299|ref|XP_003288175.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
 gi|325081805|gb|EGC35308.1| threonyl-tRNA synthetase [Dictyostelium purpureum]
          Length = 713

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI-TSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+  + G  +    +  T +G  +D+   + I ++ + K I +    I+ +
Sbjct: 152 HSSAHILGQAMERVYGGQLCIGPA--TSEGFYYDMAMGEKIVSAEDYKLINEVAMKIVQE 209

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
             P     + R+ A+          KY   +       E   ++       LC G HV +
Sbjct: 210 KQPFERLAVPRDVALTMFKYN----KYKTEIISKIPASETVSLYRCGTLVDLCRGPHVPN 265

Query: 702 TGEIMLLYIVSESS 715
           T  +    ++  SS
Sbjct: 266 TSYVKAFSVIKNSS 279


>gi|281203096|gb|EFA77297.1| threonyl-tRNA synthetase [Polysphondylium pallidum PN500]
          Length = 716

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630
           ++   D +  ++ +  HS+ H+L  A+  I G  +    +          ++ +K ++S 
Sbjct: 140 VLCKFDSEAGKK-TFWHSSAHILGQAMERIYGGQLCIGPATNEGFYYDMAMSDNKIVSSE 198

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +  +I +  N I+ +        + R+ A+          KY   +       +   ++ 
Sbjct: 199 DYATIVEVANKIVQEKQAFERLAVPRDLALQLFKYN----KYKTEIISKIPAEDTVSLYR 254

Query: 691 S----ALCGGTHVSSTGEIMLLYIVSESS 715
                 LC G H+ +T  +    +V  SS
Sbjct: 255 CGTLVDLCRGPHLPNTSYVKAFSVVKNSS 283


>gi|269302597|gb|ACZ32697.1| threonyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 635

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 23/194 (11%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      H++ HLL  A+  +    +   G  I   G  +D   +  I+ ++   I
Sbjct: 61  DPEGRE--IFLHTSAHLLAQAVLRLWPDAIPTIGPVID-HGFYYDFA-NLSISESDFPLI 116

Query: 636 EDNVNDIIAQNLPVVTRIM-NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--- 691
           ED V  I+ + L +      +++ A+A        T     +     E E+   +S    
Sbjct: 117 EDTVKQIVDEKLTISRFTYGDKQQALAQFPQNPFKT----ELIRELPENEEISAYSQGEF 172

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIE---AITGQRARSHLMGQDE 740
             LC G H+ ST  +    ++  S+        R  + RI      T +  R+HL   +E
Sbjct: 173 FDLCRGPHLPSTAHVKAFKVLRTSAAYWRGDPSRESLVRIYGTSFPTSKELRAHLEQIEE 232

Query: 741 KLKSLASFLKVSQG 754
             K     L     
Sbjct: 233 AKKRDHRVLGAKLD 246


>gi|282890339|ref|ZP_06298867.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499721|gb|EFB42012.1| hypothetical protein pah_c016o048 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 641

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL-TIDYQNRRQLSINH 587
            D     G    + +    K         A+     L+   ++   + D    +++   H
Sbjct: 25  ADKLHLNGPSQAVGVNVNGK---------AVDLTYPLKDGDAITFWSFDDPQGKEV-FWH 74

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN- 646
           ++ H+L  A+  I        G  I  +G  +D   +  I+  + + IE+ +  II +N 
Sbjct: 75  TSAHVLAQAILRIWPDAQPTIGPPI-ENGFYYDF-GNLTISDQDFEKIEEQMRLIIEENY 132

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           L       N+E+A+ + A      +   +         Y  G      LC G H+ + G+
Sbjct: 133 LSKRESFANKEEALQAFAHNPFKQELIRSFPEDAELSGYRQGEFFD--LCRGPHLYNLGK 190

Query: 705 IMLLYIVSESS--IRAGI-----RRIEAIT 727
           I  L ++  S    R         R+ AIT
Sbjct: 191 IKALKVLKTSGAYWRGNHENEMLTRVYAIT 220


>gi|305664643|ref|YP_003860930.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
 gi|88707344|gb|EAQ99590.1| threonyl-tRNA synthetase [Maribacter sp. HTCC2170]
          Length = 646

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 79/201 (39%), Gaps = 21/201 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
           +  HS++H++  AL  +        G  I  +G  +DV   +  ++  +  +IE    +I
Sbjct: 70  AFWHSSSHIVAQALEELFPGAKLTIGPAI-ENGFYYDVDFGEHTVSDKDFPAIEKKALEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                    R +++++A+    +       +  + +   ++ + D    +  LC G H+ 
Sbjct: 129 ARGKHDFKMRSVSKQEALEKYKSQKNEFKVELIENLEDGTITFCDHDTFTD-LCRGGHIP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG +  + I+S   +     R               ++++L  +       Q  +   +
Sbjct: 188 NTGIVKAIKILS---VAGAYWR------------GDEKNKQLTRVYGISFPKQKELTAYL 232

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
            ++ EE +K       ++L+L
Sbjct: 233 -QLLEEAKKRDHRKLGKELEL 252


>gi|89897864|ref|YP_514974.1| threonyl-tRNA synthetase [Chlamydophila felis Fe/C-56]
 gi|123722330|sp|Q256F9|SYT_CHLFF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|89331236|dbj|BAE80829.1| threoninyl tRNA synthetase [Chlamydophila felis Fe/C-56]
          Length = 635

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 25/230 (10%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEM--SLVLTIDYQNRRQLSINHSATHLLHHALST 599
           +I +    A  +           L        V   D + R      H++ H+L  A+  
Sbjct: 25  KIKNSHYFAGVVINDQIKDLSTTLSEGDVLKFVTFTDPEGRE--IFLHTSAHMLAQAVLR 82

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NRED 658
           +    +   G  I   G  +D   +  I+  +  +IE+ V  I  +   +  +   ++++
Sbjct: 83  LWPQAIPTIGPVIDL-GFYYDFA-NLSISEDDFPAIENMVEQIAKERFEISKKTFNDKQE 140

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSES 714
           A+   A+     +          E E+   +S      LC G H+ ST  +    ++  S
Sbjct: 141 ALQEFASNPFKVELIQEF----PEDENITCYSQGEFMDLCRGPHLPSTAPVKAFKLLRTS 196

Query: 715 S-------IRAGIRRIEAI---TGQRARSHLMGQDEKLKSLASFLKVSQG 754
           +        R  + RI  +   T +  + HL   +E  K     L     
Sbjct: 197 AAYWRGDPSRESLVRIYGVSFPTTKELKEHLHQLEEAKKRDHRVLGTKLD 246


>gi|218660550|ref|ZP_03516480.1| class II aminoacyl t-RNA synthetase domain-containing protein
           [Rhizobium etli IE4771]
          Length = 220

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 79/252 (31%), Gaps = 74/252 (29%)

Query: 76  DLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEE 135
           DLD +G    H   F MLG FSF       AI   W        L     ++T++ +   
Sbjct: 3   DLDEIG-DGTHFLHFTMLGLFSFREMTVGDAIDF-WLAFLGTLGLAPD--HVTMHPDRLI 58

Query: 136 AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGE 195
               W  + G    ++  +   +  WS       G C+E F+  G               
Sbjct: 59  E---WTPLYG---GRVPIVADAECIWSDGSIS--GYCTE-FYKHG--------------- 94

Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255
             IEI N+V                   ID G G ER+  ++         D  + L + 
Sbjct: 95  --IEIGNIVN-------------PLGSCIDVGFGAERLDMIVNGTPP---ADALETLRE- 135

Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315
                                    +   ++  G  P N+ +GYVLR+++RR       L
Sbjct: 136 -------------------------TVMTIVESGYRPGNKEQGYVLRKLLRRIHRMGGTL 170

Query: 316 GYTEPLMMHLLP 327
               P     + 
Sbjct: 171 --DHPFFGEEVE 180


>gi|68070445|ref|XP_677134.1| threonine--tRNA ligase [Plasmodium berghei strain ANKA]
 gi|56497130|emb|CAH95381.1| threonine--tRNA ligase, putative [Plasmodium berghei]
          Length = 780

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
           +    +  D  K   GI     +   G  + +   + TI+ +        HS+ H+L  +
Sbjct: 112 ENDHFEEKDNDKSQAGILWDMNVPLIGNCKIKFLGIETIEGKK----VFWHSSAHILGSS 167

Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           L  + G +++   +    +G  +D+   +  I S     IE+  N ++ +N+     +  
Sbjct: 168 LEKLYGGYLTIGPAL--SEGFYYDIYLGNNSILSENYNKIENEYNKLVKENVEFEKMVCT 225

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIV 711
           +E+ +          +       +  + E   V+       LC G H+ +TG++    ++
Sbjct: 226 KEEVLELFKYNPFKIEL--IKSKIRNDNEKTSVYKCGDFIDLCLGPHIKNTGKVKAFKVL 283

Query: 712 SESS 715
             SS
Sbjct: 284 KNSS 287


>gi|194333013|ref|YP_002014873.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
 gi|238693296|sp|B4S3D2|SYT_PROA2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|194310831|gb|ACF45226.1| threonyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 657

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 12/152 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA+H++ HA+  +        G  I   G  +D+  S   T ++L  IE  + +I  + 
Sbjct: 82  HSASHIMAHAIEELFPGSRFGAGPAI-EQGFYYDIASSHRFTESDLHDIETRMIEIGRRA 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
           + V    ++R+ AI   ++        + +     +     ++       LC G H+ +T
Sbjct: 141 IDVRREELSRQAAIDFFSSTRKDPYKVEILEDTLKDTPTVSIYHQGEFADLCTGPHLPNT 200

Query: 703 GEIMLLYIVSES-------SIRAGIRRIEAIT 727
            ++  + + + S       S R  ++RI  I 
Sbjct: 201 SKLKAVKLTNISASFWRGDSSRESMQRIYGIA 232


>gi|55379994|ref|YP_137844.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
 gi|55232719|gb|AAV48138.1| threonyl-tRNA synthetase [Haloarcula marismortui ATCC 43049]
          Length = 672

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 18/211 (8%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TP   E G  + D    IG G+            G+     + +   L  ++ L +  + 
Sbjct: 42  TPLEVERGSTVEDVAYEIGPGLGDD------TVAGVVDGELVDKHAPLTADVELEIVTES 95

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +     + HSA H+   AL  +        G   T +G  +D+T    I   +L++IE 
Sbjct: 96  SDEYLDVLRHSAAHVFAQALQRLYSDAKLTIGPW-TDNGFYYDITG-VDIDEDDLEAIEA 153

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----AL 693
              +II ++L +   +++R+DA              D +   + + E+   ++      L
Sbjct: 154 EAEEIIEEDLDIERELVDRDDAFERYEDNQFK---QDILETEAADDEEVSFYTQGEFEDL 210

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           C G HV STGEI    ++    I A   R E
Sbjct: 211 CQGPHVESTGEIGGFALLE---ISAAFWRGE 238


>gi|82753545|ref|XP_727721.1| threonyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483702|gb|EAA19286.1| threonyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]
          Length = 930

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  +L  + G +++   +    +G  +D+   +  I S     IE+  N ++ +
Sbjct: 308 HSSAHILGSSLEKLYGGYLTIGPALN--EGFYYDIYLGNNSIISENYNKIENEYNKLVKE 365

Query: 646 NLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           N+     I  +E+ +           L+ +K  +     SV Y+ G      LC G H+ 
Sbjct: 366 NVEFEKMICTKEEVLELFKYNPFKIELIKSKIKNDNEKTSV-YKCGNFID--LCLGPHIK 422

Query: 701 STGEIMLLYIVSESS 715
           +TG++    ++  SS
Sbjct: 423 NTGKVKAFKVLKNSS 437


>gi|146319020|ref|YP_001198732.1| threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|146321228|ref|YP_001200939.1| threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|253752085|ref|YP_003025226.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|253753910|ref|YP_003027051.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|166225507|sp|A4W2F0|SYT_STRS2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|166225509|sp|A4VW43|SYT_STRSY RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145689826|gb|ABP90332.1| Threonyl-tRNA synthetase [Streptococcus suis 05ZYH33]
 gi|145692034|gb|ABP92539.1| Threonyl-tRNA synthetase [Streptococcus suis 98HAH33]
 gi|251816374|emb|CAZ52005.1| threonyl-tRNA synthetase [Streptococcus suis SC84]
 gi|251820156|emb|CAR46495.1| threonyl-tRNA synthetase [Streptococcus suis P1/7]
 gi|292558668|gb|ADE31669.1| Threonyl-tRNA synthetase [Streptococcus suis GZ1]
 gi|319758452|gb|ADV70394.1| threonyl-tRNA synthetase [Streptococcus suis JS14]
          Length = 650

 Score = 58.5 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + +L + +   +     + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGKLIDTTRAIDEDGTLEIVMPDHDDALDILRHSAAHLFAQAARRLFPDIKL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           +  I++ +L  I++ +  I+ +N P   R + +E+A+      
Sbjct: 93  GVGPAIQDGFYYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALEIFKND 152

Query: 667 LLGT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                   +++D    +++  +        LC G HV STG I +  ++   ++     R
Sbjct: 153 PYKLELIHEHSDDEGGLTIYTQG---EYVDLCRGPHVPSTGRIQIFELL---NVAGAYWR 206


>gi|15835484|ref|NP_297243.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270285665|ref|ZP_06195059.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
 gi|270289673|ref|ZP_06195975.1| threonyl-tRNA synthetase [Chlamydia muridarum Weiss]
 gi|301337060|ref|ZP_07225262.1| threonyl-tRNA synthetase [Chlamydia muridarum MopnTet14]
 gi|13878797|sp|Q9PJF9|SYT_CHLMU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|7190897|gb|AAF39666.1| threonyl-tRNA synthetase [Chlamydia muridarum Nigg]
          Length = 635

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 21/220 (9%)

Query: 550 AEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
           A  +           L+   +++ LT D    R++   H++ H+L  A+  +  S     
Sbjct: 33  AGALINDQEKDLSTTLKDGDTVLFLTWDDPQGREI-FLHTSAHILAQAVLRLWPSAQPTI 91

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NREDAIASGAAAL 667
           G  I   G  +D   +  I+  +  +IE     I  + L +  ++  ++E+ +A  +   
Sbjct: 92  GPVID-QGFYYDFA-NLSISEEDFPAIEAMAKAIAEEKLAISRQVFSDKEETLAYFSDNP 149

Query: 668 LG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR----- 721
                  +     ++     G     LC G H+ ST  +    ++  S   A  R     
Sbjct: 150 FKIELITELPEEATISAYKQGEFLD-LCRGPHLPSTAPVKAFKLLRTS--AAYWRGDPSK 206

Query: 722 ----RIEAI---TGQRARSHLMGQDEKLKSLASFLKVSQG 754
               RI  I   T +  + HL   +E  K     L     
Sbjct: 207 ESLIRIYGIAFPTTKELKEHLHQLEEAKKRDHRVLGTKLD 246


>gi|226355500|ref|YP_002785240.1| threonyl-tRNA synthetase [Deinococcus deserti VCD115]
 gi|259516378|sp|C1D0W2|SYT_DEIDV RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226317490|gb|ACO45486.1| putative threonine--tRNA ligase (threonyl-tRNA synthetase)
           [Deinococcus deserti VCD115]
          Length = 649

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 585 INHSATHLLHHALSTIL------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638
             HS  H++  A+             + +       +G   D    +P+   +L  IE  
Sbjct: 71  FRHSLGHVMSQAVGEYYRAKGYSDDRIKRGVGPSIENGWYQDFDLPEPLREEDLPEIEKI 130

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + +I+++NL    R +++ + +A                    + +   G +   LC G 
Sbjct: 131 MREILSRNLAFRRREVSKAEGLAQFPHDPYKQELIQGLPDDEPITFYQQGDYVD-LCRGP 189

Query: 698 HVSSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           H  STG +     ++S S                A      ++  L+ +      SQ  +
Sbjct: 190 HFPSTGRLPGAFKLMSTSG---------------AYWRGNEKNPILQRVYGVAFASQKEL 234

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL 781
              + ++ EE ++       R+L+L
Sbjct: 235 DEYLHQL-EEAKRRDHRKLGRELEL 258


>gi|189345705|ref|YP_001942234.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
 gi|238692169|sp|B3EEC1|SYT_CHLL2 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|189339852|gb|ACD89255.1| threonyl-tRNA synthetase [Chlorobium limicola DSM 245]
          Length = 657

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 15/186 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           ++T D Q  R +   H+A+H++  A+  I        G   T  G  +DV         +
Sbjct: 68  IVTFDSQLGRDI-FWHTASHIMAQAIEEIFPGSRFGAGPA-TEQGFYYDVASEHRFREED 125

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG----TKYNDRVRVVSVEYEDGG 687
           L++IE  + +I  +N+ +    M R DAIA   +            D ++ V        
Sbjct: 126 LRAIEQKMLEIAKRNIMLQREEMKRVDAIAYFTSVRNDPYKVEILEDTLKHVDTVSLYHQ 185

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT--GQRARSHLMGQ 738
              + LC G H+ ST  +  + + + S       S R  ++RI  I     +     + +
Sbjct: 186 GDFADLCTGPHLPSTSRLKAVLLSNISSSYWRGDSSRENMQRIYGIAFPSDKLLKEHIAR 245

Query: 739 DEKLKS 744
            E+ K 
Sbjct: 246 QEEAKR 251


>gi|332177556|gb|AEE13246.1| threonyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 650

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 21/202 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H++ HL+  AL  +        G  I         T  + I S +L  IE  + ++
Sbjct: 72  HAFWHTSAHLMAEALQELYPGVQFGIGPAIDAGFYYDIDTGDEVIKSEDLPKIEAKMLEL 131

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +   +  + +++ DA+        G K    ND        Y  G      LC G H+
Sbjct: 132 ARRKETLERKAISKSDALDFFKKTGQGYKLELINDLEDGTITTYTQGAFTD--LCRGPHL 189

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  I  + ++S   +     R     G   R  L                 +  ++  
Sbjct: 190 PSTAPIKAVKLLS---VAGAYWR-----GDETRKQLTRIYGI--------TFPKKKLLDE 233

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
              + EE +K       ++L+L
Sbjct: 234 YLALLEEAKKRDHRKIGKELEL 255


>gi|313887217|ref|ZP_07820913.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923446|gb|EFR34259.1| threonine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 650

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 21/202 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H++ HL+  AL  +        G  I         T  + I S +L  IE  + ++
Sbjct: 72  HAFWHTSAHLMAEALQELYPGVQFGIGPAIDAGFYYDIDTGDEVIKSEDLPKIEAKMLEL 131

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTK---YNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +   +  + +++ DA+        G K    ND        Y  G      LC G H+
Sbjct: 132 ARRKETLERKAISKSDALDFFKKTGQGYKLELINDLEDGTITTYTQGAFTD--LCRGPHL 189

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            ST  I  + ++S   +     R     G   R  L                 +  ++  
Sbjct: 190 PSTAPIKAVKLLS---VAGAYWR-----GDETRKQLTRIYGI--------TFPKKKLLDE 233

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
              + EE +K       ++L+L
Sbjct: 234 YLALLEEAKKRDHRKIGKELEL 255


>gi|71655606|ref|XP_816364.1| threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]
 gi|70881486|gb|EAN94513.1| threonyl-tRNA synthetase, putative [Trypanosoma cruzi]
          Length = 817

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 9/154 (5%)

Query: 567 TEMSLVLTIDYQN-RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
              + +  +D+ +   +    HS++H+L +AL  +  + +S  G  +   G  ++    +
Sbjct: 115 EGDATLELLDWDDPEARHVFWHSSSHVLGYALERVFHTRLSV-GPALEEGGFFYEGDTGR 173

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           P++  + KSIE  + +++   +P     +++ DA+         +K    +     E   
Sbjct: 174 PLSETDYKSIEIAMQELVKMKMPYQRLTVSKADALLLFGYTEFKSKI---LASKVPENGF 230

Query: 686 GGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
             V+        C G H+  TG +    +   SS
Sbjct: 231 CTVYRCGHLIDPCRGPHLPDTGRVKAFAVTKNSS 264


>gi|326431769|gb|EGD77339.1| threonyl-tRNA synthetase isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 766

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 21/174 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+         +G  +D+   +  +  A+LK++E  VN  + Q
Sbjct: 158 HSSAHILGEAMEMYFGGHLCYGPPI--ANGFFYDMDMGERTVNDADLKAVEKVVNKAVKQ 215

Query: 646 NLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             P    +M +ED +           ++  K  +    V   Y  G +    LC G H+ 
Sbjct: 216 KQPFQRLVMTKEDLLRMFEHNPFKQRIIKEKVTEPKTTV---YRCGPLID--LCRGPHIR 270

Query: 701 STGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            TG++    +   SS           ++R+ AI+  + +  L    + ++  A 
Sbjct: 271 HTGQVKAFAVTKSSSSYWEGDAGAECLQRVYAISFPK-KDQLKEWKKLMEEAAK 323


>gi|82524022|emb|CAI78700.1| Threonyl-tRNA synthetase [uncultured Flavobacteriaceae bacterium]
          Length = 644

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 19/199 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDI 642
           +  HS+ H+L  AL  +        G  I  +G  +DV   +   S  + K+IED + +I
Sbjct: 70  AFWHSSAHVLAQALEELYPGIKLTIGPAI-ENGFYYDVDFGEHTVSEKDFKTIEDKIIEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                    R +++++A++        T+  + +   ++ + D    +  LC G H+  T
Sbjct: 129 ARGKHTFKMRAVSKKEALSLYKDNTFKTELIENLEDGTITFCDHSTFTD-LCRGGHIPDT 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  + I+S   +     R               ++ +L  +       Q  +   +  
Sbjct: 188 GIIKAVKILS---VAGAYWR------------GNEKNPQLTRVYGISFPKQKELTDYL-N 231

Query: 763 IWEEYRKLQLIHAKRKLQL 781
           + EE +K       ++L+L
Sbjct: 232 LLEEAKKRDHRKLGKELEL 250


>gi|269114879|ref|YP_003302642.1| threonyl-tRNA synthetase (threonine-tRNAligase, thrRS) [Mycoplasma
           hominis]
 gi|268322504|emb|CAX37239.1| Threonyl-tRNA synthetase (Threonine-tRNAligase, ThrRS) [Mycoplasma
           hominis ATCC 23114]
          Length = 579

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 13/171 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NHSA+HLL  A+  +  +     G  I  +G  +D     PI  ++L +IE  + ++  
Sbjct: 7   LNHSASHLLAAAILKLYPNAKLAIGPAI-EEGFYYDFEFENPILESDLPNIEKVMKELAK 65

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTHVS 700
           +   +    + +           L  ++    + ++       +   +  + LC G H+ 
Sbjct: 66  EGYEMRKVGIEQYSFENQPYKKELYEEFKKEGKEITFFQYWNPKTKEILFTDLCAGGHIE 125

Query: 701 STGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
           ++ EI    ++  +       S    + RI        +  L    + L+ 
Sbjct: 126 NSREIKYFKLLGIAGAYWRGDSKNKMLTRIYGTC-WETKDELAKYLDILRE 175


>gi|149371736|ref|ZP_01891152.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
 gi|149355363|gb|EDM43923.1| threonine--tRNA ligase (threonine tRNA synthetase) [unidentified
           eubacterium SCB49]
          Length = 647

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 91/262 (34%), Gaps = 27/262 (10%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D   +I +G+   +       E +     + E G L     ++ T +    ++
Sbjct: 15  ENGSTVMDVAMSISEGLARNVLSATYNGETVETATTLTEDGNL-----VLFTWNNDEGKK 69

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
            +  HS+ H+L  AL  +        G  I  +G  +DV   + P    +L  +E  + +
Sbjct: 70  -AFWHSSAHILAQALEELYPGVKLTIGPAI-ENGFYYDVDFGNTPFVEKDLADVEKKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           I     P   R  ++ DA+            +  + +   ++ + D    +  LC G H+
Sbjct: 128 IARGKHPFTLRATSKADALDFYKKQDNEYKVELIENLEDGTITFCDHDSFTD-LCRGGHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
                   +  +   SI     R                +++L  +       Q  +   
Sbjct: 187 PH---TGFVKAIKLMSIAGAYWR------------GDENNKQLTRIYGITFPKQKELKEY 231

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +  + EE +K       ++L+L
Sbjct: 232 L-ALLEEAKKRDHRKLGKELEL 252


>gi|303390083|ref|XP_003073273.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
 gi|303302418|gb|ADM11913.1| threonyl-tRNA synthetase [Encephalitozoon intestinalis ATCC 50506]
          Length = 646

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 20/182 (10%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
             N  +    HS+ H+L +AL  +       +G   T +G  +DV     I+S + + IE
Sbjct: 65  EDNGAREIFWHSSAHILGNALVNLYPDAKLVHGPP-TEEGFFYDVDIKDSISSEDYQKIE 123

Query: 637 DNVNDIIAQNLPVVTRIMNREDA----IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +  I+ +N      I ++E+       +        K  D+   V   Y +G      
Sbjct: 124 MEMLKIMKKNYRFEKVIKSKEELLNAYKDNPCKTHFIKKGVDKESSV---YRNGDFFD-- 178

Query: 693 LCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT---GQRARSHLMGQDEKL 742
           +C G HV STG +  + ++  SS           ++RI AIT    +  + +L  ++E +
Sbjct: 179 MCLGPHVLSTGVVKAVKVLKNSSAYFLNDPSLKSLQRIYAITFPSKEMLQEYLKRKEEAM 238

Query: 743 KS 744
           + 
Sbjct: 239 ER 240


>gi|298250750|ref|ZP_06974554.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297548754|gb|EFH82621.1| threonyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 624

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 30/165 (18%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            + HS  HL+  A+  +        G  I  +G  +D+   + +T  +L  IE  + ++ 
Sbjct: 18  RMRHSTAHLMAAAVQLLWPEAKFGVGPAI-KNGFYYDIELPEALTPKDLGRIEQKMRELK 76

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKY------------------NDRVRVVSVEYED 685
            + L      +  ++AI   +      K                    D   +   E ++
Sbjct: 77  NKKLGYDRIEVGIDEAIEEMSKRNQPYKVELLNLLKERGSTAVVQETGDAEAIGLSEGQE 136

Query: 686 GGVHSS--------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G    S         LC G HV  T  I +  ++S   I     R
Sbjct: 137 GSTVVSFYQTGHFLDLCRGPHVEDTTHIGVFKLMS---IAGAYWR 178


>gi|32490830|ref|NP_871084.1| hypothetical protein WGLp081 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340448|sp|Q8D3C0|SYT_WIGBR RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|25166036|dbj|BAC24227.1| thrS [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 636

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 67/189 (35%), Gaps = 27/189 (14%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S +HLL +A+  +  +      + IT +G  +D+  +  ++  +LK IE  ++ ++  N 
Sbjct: 73  SCSHLLGYAIKQLWPTSK-MATNNITENGFYYDIDLNHKLSKNDLKLIEKKMHQLLKINF 131

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCGGTHVSST 702
            +    +    A        L   Y  ++   ++      Y         LC   HV + 
Sbjct: 132 KINKINVTWGKAYEMF--KNLNEIYKIKILEDNISKNSSLYIYHQEQYVDLCTLPHVPNI 189

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
              M   I   S                A      +++ L+ +     V+  +   +++ 
Sbjct: 190 KFCMFFKIQKISG---------------AYWKGNKKNKMLQRIY----VTSWDSNSKLKN 230

Query: 763 IWEEYRKLQ 771
             +  ++L+
Sbjct: 231 FIKNIKELE 239


>gi|323477064|gb|ADX82302.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus HVE10/4]
          Length = 150

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H++  A+  +LG+      + +  +  R  V   +  +  E+  + +  N+ + 
Sbjct: 7   RTHTALHVVKGAVRKVLGAK-WTASTYVNSNHGRLTVKFERKPSDEEMDKVFELANEKVR 65

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +NLP++  ++ RE+A       +      +  VR +S+        +   C   H  +T 
Sbjct: 66  KNLPIIIEVLPREEAERKYGDEIYDLFLISAEVRELSIVV--IPDWNINACNKQHTKTTS 123

Query: 704 EIMLL 708
           EI  +
Sbjct: 124 EIGEI 128


>gi|256819829|ref|YP_003141108.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581412|gb|ACU92547.1| threonyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 647

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDI 642
           +  HS+ H+L  AL  +        G  I  +G  +DV  + KPI+  +  +IE    +I
Sbjct: 70  AFWHSSAHILAQALEELYPGIKLTIGPAI-ANGFYYDVDFNGKPISEKDFPAIEAKFLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                P   R +++ +A++  A      T+  + +   ++ + D    +  LC G H+ +
Sbjct: 129 ARGKHPFKMRPVSKAEALSYYAGKNEYKTELIEALEDGTITFCDHSTFTD-LCRGGHIPN 187

Query: 702 TGEIMLLYIVS 712
           TG +  + ++S
Sbjct: 188 TGFVKAVKVLS 198


>gi|256390392|ref|YP_003111956.1| metal-dependent hydrolase [Catenulispora acidiphila DSM 44928]
 gi|256356618|gb|ACU70115.1| putative metal-dependent hydrolase [Catenulispora acidiphila DSM
           44928]
          Length = 288

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 70/254 (27%), Gaps = 71/254 (27%)

Query: 509 QKVEVVFDQTPFYA---EAGGQLGDTGCAIGDGIRLQITDVQKKAEG------------- 552
           +   V+ D TPF+        Q GDTG     G    + D      G             
Sbjct: 30  EGAGVIVDTTPFHPLDHSWPDQPGDTGVLRAAGAEHAVADCVTGGVGPDGEFALGTDIPV 89

Query: 553 --------IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS- 603
                       H + +        ++ L +D   R  LS +H+  HL+  AL+  L   
Sbjct: 90  RRGDESWQWLAVHILDKAEAPAPGTAVELRVDEARRAALSASHTGCHLMALALNEALTDR 149

Query: 604 -----------HVSQNGSCIT---------PDGLR---------FDVTHSKPITSAELKS 634
                      H   +   +           D  R         FD    +       + 
Sbjct: 150 WRKEARTDGLNHPDFDSLAMDTSRIALDASTDRYRLGKSLRKKGFDPEGLRETLPELTEK 209

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           I   + + ++Q+  +       E          L        R V +            C
Sbjct: 210 INTRLAEWLSQDATIRIDTPGPELTARRQWVCELPE------RTVEI-----------PC 252

Query: 695 GGTHVSSTGEIMLL 708
           GGTH+   GE+  L
Sbjct: 253 GGTHLHRLGELASL 266


>gi|289580635|ref|YP_003479101.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
 gi|289530188|gb|ADD04539.1| threonyl-tRNA synthetase [Natrialba magadii ATCC 43099]
          Length = 650

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 18/214 (8%)

Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572
           V+ D +  + + G  + D    IG G+       +    G      + +         L 
Sbjct: 16  VLPDGSELHVDEGATVEDCAYEIGPGL------GRDTVAGKLDGDLVAKEQPAYDGAELE 69

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           +  D        + HSA+H L  A+       V       T +G  +D   +  I   +L
Sbjct: 70  IITDQSEEYLAVMRHSASHCLAQAVER-HYDDVDLAIGPPTDEGFYYDFD-NLDIDEDDL 127

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
            ++E  + DI+ ++  +    ++ E+A    A      +          E E    ++  
Sbjct: 128 AALESEIADIVDEDYEIEREEVSIEEAEERLADEPYKLELLSEFAD---ENEQVTFYTQG 184

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
               LC G HV STGEI  + ++    I     R
Sbjct: 185 EWEDLCAGPHVDSTGEIGPVKLLE---IAGAYWR 215


>gi|86131542|ref|ZP_01050140.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
 gi|85817987|gb|EAQ39155.1| Threonyl-tRNA synthetase [Dokdonia donghaensis MED134]
          Length = 647

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 14/201 (6%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I +G+   +   +   E       +     L  + S+ L        + +
Sbjct: 17  GATPMDVAKSISEGLARNVISAKFNGE------TVETSTPLTEDGSITLFTWNDEEGKTA 70

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
             HS++H+L  A+  +        G  I  +G  +DV    + I+  + K IED + +I 
Sbjct: 71  FRHSSSHVLAQAILKLYPGAKLTIGPAI-ENGFYYDVDLGDQTISDKDFKKIEDKMLEIA 129

Query: 644 AQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   R + +++A+            +  + +   ++ + D    +  LC G H+ +
Sbjct: 130 RGKHDFKMRSVTKQEALDKYKCEGNEFKVELIENLEDGTITFCDHDDFTD-LCRGGHIPN 188

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I  + I+S   +     R
Sbjct: 189 TGIIKAVKIMS---VAGAYWR 206


>gi|268638348|ref|XP_644871.2| hypothetical protein DDB_G0272913 [Dictyostelium discoideum AX4]
 gi|256013055|gb|EAL71094.2| hypothetical protein DDB_G0272913 [Dictyostelium discoideum AX4]
          Length = 253

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLR--FDVTHSKPITSAELKSIEDNVNDIIAQ 645
           SA H+L  A+  +LG+ ++ +  C      R   +  H +  +   +  IE+  N II Q
Sbjct: 13  SACHVLKGAIVKVLGTPITISVECNNKVKGRISVEYEHPEKPSQELINKIEEEANLIIKQ 72

Query: 646 NLPVVTRIMNREDAIASGAAAL-----LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           NL   T  +++++A +   + L     +  K+     V  +   +    +   C   H+ 
Sbjct: 73  NLEFKTFKIDKKEAESKYKSNLVNNTYIYDKFPVPESVTELSLVELENWNINCCPAVHLK 132

Query: 701 STGEIMLLYIVS 712
           +TGEI  + I  
Sbjct: 133 TTGEIGGIKIAG 144


>gi|149173541|ref|ZP_01852171.1| threonyl-tRNA synthetase [Planctomyces maris DSM 8797]
 gi|148847723|gb|EDL62056.1| threonyl-tRNA synthetase [Planctomyces maris DSM 8797]
          Length = 726

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  + P G  +D      I+  +   IE+ +  II 
Sbjct: 76  MRHSCAHIMARAVMRLWPGIQLAFGPTL-PHGFYYDFGLEHTISEDDFPKIEEEMKKIIK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     ++R++A++        +K  + ++    ++     +       LC G H+ 
Sbjct: 135 EEEPFERFSLDRDEAVSFVNEMDQHSK-AEHIQTGLADHGKLSFYRQGEFVDLCRGPHIP 193

Query: 701 STGEIMLLYIVS 712
           + G++    ++S
Sbjct: 194 NAGKVKAFKLLS 205


>gi|148377610|ref|YP_001256486.1| threonyl-tRNA synthetase [Mycoplasma agalactiae PG2]
 gi|148291656|emb|CAL59042.1| Threonyl tRNA synthetase [Mycoplasma agalactiae PG2]
          Length = 582

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ +HLL  A+ T+   +V       T +G  +D   ++P++  EL  IE  +  + +
Sbjct: 9   LNHTTSHLLGAAVETLYP-NVKLGFGPATDEGFYYDFDFAEPLSENELGKIEKLMKKLAS 67

Query: 645 QNL-PVVTRIMNREDAIASGAAALLGT---KYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           +NL  V       + A       L      +  +       +  +  +    LC G H+ 
Sbjct: 68  RNLVTVKIDENQYDFANKPYKKELYDELKSQGKEITFYALQDPLNKELVFKDLCAGNHIE 127

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  I    ++S   I     R
Sbjct: 128 STKNIKNFKLLS---IAGAYWR 146


>gi|88803834|ref|ZP_01119357.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
 gi|88780362|gb|EAR11544.1| threonyl-tRNA synthetase [Polaribacter irgensii 23-P]
          Length = 646

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 27/257 (10%)

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D   +I +G    +          F    +     L T+ SL+L        + +  H
Sbjct: 20  PMDIAKSISEGFARNVIS------ANFNKTTVETSTPLTTDGSLILYTFEDTNGKKAFWH 73

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQN 646
           S+ H+L  A+           G  I  +G  +DV   + I S  + K +E    +I    
Sbjct: 74  SSAHVLAEAILNFYPKAKLTIGPAID-NGFYYDVDLEEDIISDKDFKQLETKFLEIARGK 132

Query: 647 LPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
                R +++ DA++  AA       +  + +    + + D    +  LC G HV +TG 
Sbjct: 133 HEFSIRSVSKADALSKYAAEDNPYKVELIENLTDGDITFCDHSDFTD-LCRGGHVPNTGI 191

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I  + I S   +     R               ++++L  +       +  ++     + 
Sbjct: 192 IKAIKITS---VAGAYWR------------GDEKNKQLTRVYGI-SFPKQKLLTEYLALL 235

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE ++       R+L+L
Sbjct: 236 EEAKQRDHRKLGRELEL 252


>gi|328472591|gb|EGF43454.1| hypothetical protein VP10329_12211 [Vibrio parahaemolyticus 10329]
          Length = 317

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 84/255 (32%), Gaps = 65/255 (25%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   VV D TPF+  +        D G  + +  +L++ D                    
Sbjct: 53  EVTYVVTDVTPFHPVSHIWPDHPADKGILVFNDQQLEVIDCQVGAIEVATGELFVGAAIP 112

Query: 546 VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  EG    V H +     L     + L +D + ++ LS  HSA HL + AL+ +L +
Sbjct: 113 VKRDTEGWLFVVVHVLALVDTLSQGARVTLKVDKEYQQALSRGHSAGHLAYLALNKVLAA 172

Query: 604 HVS-------------------QNGSCITPDGLRFDVTHSKPITS---------AELKSI 635
                                 Q  S +TPD         K +           ++L+ I
Sbjct: 173 SYWRKDADRKDPHGNYDFNSYAQEASFVTPDKCLDIYRLGKTLRKRGLNSAEMLSDLEKI 232

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN  +          + R+ AI        G    D         E  G  +   CG
Sbjct: 233 EGQVNAQLK-------FWLERDAAIIMDC---HGDNLTDSRYWKCDLGE--GELAVIPCG 280

Query: 696 GTHVSSTGEIMLLYI 710
           GTH     +   +++
Sbjct: 281 GTHAEHLSDFGSIHV 295


>gi|116512847|ref|YP_811754.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122939966|sp|Q02WN1|SYT_LACLS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|116108501|gb|ABJ73641.1| Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 646

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSA HL   A      +     G  I           +  I++ +L +IE  +  I+ 
Sbjct: 71  LRHSAAHLFAQAAKRHFPNIHLGVGPAIQDGFYYDTDNEAGQISNDDLATIEAEMKKIVK 130

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYEDGGVHSSALCGGTHVSST 702
           +N     + +++E+A    A      +  +        +     G ++  LC G HVSST
Sbjct: 131 ENFKSERKEVSKEEAKEIFANDPYKLELIEEHNEDEGGLTIYTQGEYTD-LCRGPHVSST 189

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G I   +++   ++     R
Sbjct: 190 GVIKFFHLL---NVAGAYWR 206


>gi|325263251|ref|ZP_08129986.1| threonine--tRNA ligase [Clostridium sp. D5]
 gi|324031644|gb|EGB92924.1| threonine--tRNA ligase [Clostridium sp. D5]
          Length = 653

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 18/173 (10%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            H+ +H+L  A+  +        G  I  D   +    + P +  +L  IE  +  II +
Sbjct: 71  RHTCSHVLAEAVKNLFPDAKLAIGPAI--DTGYYYDFDAAPFSREDLDKIEKEMKKIIKK 128

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
              +    + RE+AIA       G  Y   +     E      +       LC G H+ S
Sbjct: 129 GAKLEKFTLPREEAIAF--MEEKGEPYKVELIRDLPEDSVISFYRQGDFVDLCAGPHLMS 186

Query: 702 TGEIMLLYIVSES-------SIRAGIRRIE---AITGQRARSHLMGQDEKLKS 744
           T  I    + S S       S +A ++RI      T      +L   +E  K 
Sbjct: 187 TKGIKAFKLTSSSGAYWRGDSNKAMLQRIYGSAFATKDELNEYLQYLEEVKKR 239


>gi|320580027|gb|EFW94250.1| Threonyl-tRNA synthetase [Pichia angusta DL-1]
          Length = 714

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK---PITSAELKSIEDNVNDII 643
           HS+ H+L        G+H+       T DG  +D+   +    ++  +   IE   +  I
Sbjct: 141 HSSAHILGEGCENHYGAHLCFGPP--TEDGFFYDMAIDEGDYKVSQNDFSDIETLCSRAI 198

Query: 644 AQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  P    +M +++ +          AL+ +K  D     S  Y  G +    LC G H
Sbjct: 199 KEKQPFERLVMTKDELLEMFSYNKYKVALIKSKIPD--GTSSTVYRCGPLID--LCRGPH 254

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG +    ++  SS
Sbjct: 255 VPHTGRVKAFKVLKNSS 271


>gi|309811262|ref|ZP_07705053.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
 gi|308434802|gb|EFP58643.1| threonine--tRNA ligase [Dermacoccus sp. Ellin185]
          Length = 665

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED----NVN 640
           + HSA H+L  A+  I  S     G  +T DG  +D   ++  T  +LK +E      VN
Sbjct: 68  LRHSAAHVLAQAVQQINPSAKLGIGPPVT-DGFYYDFDVAEAFTPDDLKKLEKAMQRIVN 126

Query: 641 DIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEY--------------ED 685
           +    N  V+T     E+ A       L+G K N        E                D
Sbjct: 127 EGQTFNRRVITDAEGLEELAHEPYKCELIGLKGNAANAAEGAEAEVGGGELTIYDNVRRD 186

Query: 686 GGVHSSALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G V    LC G HV ST  +     ++      A   R
Sbjct: 187 GTVAWGDLCRGPHVPSTKVLGNAFKLM---RSAAAYWR 221


>gi|83859100|ref|ZP_00952621.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
 gi|83852547|gb|EAP90400.1| threonyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633]
          Length = 613

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 39/216 (18%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  HSA HL+  A+  +  +     G   T  G  +D+   +P+T  +L  IE  + ++ 
Sbjct: 10  TRRHSAAHLMAAAIKDLWPNAKFGVGPA-TATGFYYDIQLEEPLTVEDLPKIEKRMKELR 68

Query: 644 AQNLPVVTRIMNREDAI-------------------ASGAAALLGTKYNDRVR---VVSV 681
            +           ++AI                     G+ A+     ++ V    +  +
Sbjct: 69  KKKKKFYCEAHGIDEAIDYMAKEGQDFKVELLKLLRDKGSTAIAKETGDESVAGEGLDEI 128

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741
            +   G     LC G HV  +G++    +    SI     R +A             + +
Sbjct: 129 TFYRTGDFVD-LCRGPHVDHSGQVGEFKL---RSIAGAYWRGDA------------NNAQ 172

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
           L+ + +    ++  +   V  + E+ ++      K 
Sbjct: 173 LQRIHALAFETKEELEAEVTRLEEQAKRDHRKIGKE 208


>gi|323473903|gb|ADX84509.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus REY15A]
          Length = 150

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H++  A+  +LG+      + +  +  R  V   +  +  E+  + +  N+ + 
Sbjct: 7   RTHTALHVVKGAVRKVLGAK-WTASTYVNSNHERLTVKFERKPSDEEMDKVFELANEKVR 65

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +NLP++  ++ RE+A       +      +  VR +S+        +   C   H  +T 
Sbjct: 66  KNLPIIIEVLPREEAERKYGDEIYDLFLISAEVRELSIVV--IPDWNINACNKQHTKTTS 123

Query: 704 EIMLL 708
           EI  +
Sbjct: 124 EIGEI 128


>gi|154174749|ref|YP_001407384.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
 gi|171769252|sp|A7GVZ2|SYT_CAMC5 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112802358|gb|EAT99702.1| threonyl-tRNA synthetase [Campylobacter curvus 525.92]
          Length = 606

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 21/190 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIEDNV 639
             I HS  HL+  A+ ++  +     G  +  DG  +D    +    +  ++L++IE  +
Sbjct: 39  HVIRHSCAHLMAQAIKSLYPNAKFFVGPNV-EDGFYYDFRVDEAGTKLGESDLEAIEKKM 97

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            ++      +      +           L  +   R+    V     G     LC G HV
Sbjct: 98  KELAEAKFEITKICSTKAAMSEKFKNDDLKQEVLKRIPEGEVSSYAQGDF-EDLCRGPHV 156

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +T  +    +               + G  A        E L  +       + ++   
Sbjct: 157 PNTKFLRFFKLTR-------------VAG--AYLGGDETREMLNRIYGTAYADKASLAEH 201

Query: 760 VEEIWEEYRK 769
           +  I EE +K
Sbjct: 202 I-RIIEEAKK 210


>gi|152967010|ref|YP_001362794.1| threonyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
 gi|151361527|gb|ABS04530.1| threonyl-tRNA synthetase [Kineococcus radiotolerans SRS30216]
          Length = 656

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 32/212 (15%)

Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
            G    +   + +  V  +   +          +L     +             + HSA 
Sbjct: 22  AGELFAEDRDVVVARVNGELRDL--------SHVLAEGDEVEGVPISSEDGLAVLRHSAA 73

Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           H++  A+           G  I  DG  FD    +P T  +LK +E  +  I+ +    V
Sbjct: 74  HVMAQAVKQHFPEARLGIGPPI-RDGFYFDFDVERPFTPEDLKVVEKTMQRIVKEGQRFV 132

Query: 651 TRIMNREDAIASGAAALLGTKY-------NDRVRVVSVEYEDGGVHS------------S 691
            R ++ ++A A  A      +         D     S E  +GG+               
Sbjct: 133 RREVSDDEARAEMADEPYKLELIGLKSSAGDAAEGASAEVGEGGLTIYDNLKRDDAVAFR 192

Query: 692 ALCGGTHVSSTGEIML-LYIVSESSIRAGIRR 722
            LC G H+ +T  + +   ++      A   R
Sbjct: 193 DLCRGPHLPTTRLVGIGFSLL---RSAAAYWR 221


>gi|315225228|ref|ZP_07867045.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
 gi|314944911|gb|EFS96943.1| threonine--tRNA ligase [Capnocytophaga ochracea F0287]
          Length = 646

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDI 642
           +  HS+ H+L  AL  +        G  I  +G  +DV  + KPI+  +  +IE    +I
Sbjct: 70  AFWHSSAHILAQALEELYPGIKLTIGPAI-ANGFYYDVDFNGKPISEKDFPAIEAKFLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                P   R +++ +A+   A      T+  + +   ++ + D    +  LC G H+ +
Sbjct: 129 ARGKHPFKMRPVSKAEALLYYAGKNEYKTELIEALEDGTITFCDHSTFTD-LCRGGHIPN 187

Query: 702 TGEIMLLYIVS 712
           TG +  + ++S
Sbjct: 188 TGFVKAVKVLS 198


>gi|67475342|ref|XP_653365.1| threonyl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS]
 gi|56470308|gb|EAL47979.1| threonyl-tRNA synthetase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 676

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ HLL  A+ T    ++   G     D   +D   +  I++A+ K ++  +   + ++
Sbjct: 115 HSSAHLLGEAMETQYKCYL-HTGPATAID-FFYDCKMNGAISAADFKKLQSLIEGYVREH 172

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                  + +E+A+   A      K  +++   S            LC G H+++   I 
Sbjct: 173 QVFTRIEITKEEALKMFAYNPYKVKIIEKLPEGSTITAYKNGSFVDLCRGPHLANAASIK 232

Query: 707 LLYIVSESSI-------RAGIRRIEAI---TGQRARSHLMGQDEKLKS 744
            + I+S  S+          ++RI A+   T    + ++   +E  K 
Sbjct: 233 AIKILSSGSVHLDGTATGDLLQRIHAVSFPTKDLLKEYIKRAEEADKR 280


>gi|145224420|ref|YP_001135098.1| threonyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK]
 gi|189083613|sp|A4TD09|SYT_MYCGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|145216906|gb|ABP46310.1| Ser-tRNA(Thr) hydrolase [Mycobacterium gilvum PYR-GCK]
          Length = 695

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 69/188 (36%), Gaps = 31/188 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+  +        G  IT DG  +D   ++P T   L+++E  +  I+ 
Sbjct: 76  IRHSAAHVLAQAVQEMFPDAKLGIGPPIT-DGFYYDFDVAEPFTPEHLQALEKKMRKIVK 134

Query: 645 QNLPVVTRIM-NREDAIAS-----GAAALLGTKYN-DRVRVVSVEYEDGGVHSS------ 691
                  R+  ++++A A          L+  K   D   V+ V  ++   + +      
Sbjct: 135 DGQIFERRVFGSKDEARAELASEPYKLELIDDKSGADDPEVMEVGGDELTAYDNLNPRTR 194

Query: 692 -----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMG 737
                 LC G H+ +T  I    +    S  A  R         RI   T   ++  L  
Sbjct: 195 ERVWGDLCRGPHIPTTRYIPAFTLTR--SSAAYWRGDQNNASLQRIYG-TAWESQEALDR 251

Query: 738 QDEKLKSL 745
             E ++  
Sbjct: 252 HLELIEEA 259


>gi|183982102|ref|YP_001850393.1| threonyl-tRNA synthetase ThrS [Mycobacterium marinum M]
 gi|238690929|sp|B2HM74|SYT_MYCMM RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|183175428|gb|ACC40538.1| threonyl-tRNA synthetase ThrS [Mycobacterium marinum M]
          Length = 691

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 27/185 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  IT DG  +D    +P T  +L+++E  +  I+ 
Sbjct: 83  IRHSTAHVLAQAVQDLFPQAKLGIGPPIT-DGFYYDFEVLEPFTPDDLQALEKRMRQIVK 141

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
           +      R+         E A       L+  K  D   V+ V  ++   + +       
Sbjct: 142 EGQLFDRRVFESKDQAREELANEPYKLELVDDKSGDPD-VMEVGGDELTAYDNLNPRTRE 200

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDE 740
                LC G H+ +T  I    +   S+         A ++RI   T   ++  L    E
Sbjct: 201 RVWGDLCRGPHIPTTKHIPAFKLTRSSAAYWRGDQKNASLQRIYG-TAWESQEALDKHIE 259

Query: 741 KLKSL 745
            ++  
Sbjct: 260 LIEEA 264


>gi|66806197|ref|XP_636821.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
 gi|74852684|sp|Q54J66|SYTC1_DICDI RecName: Full=Probable threonyl-tRNA synthetase 1, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS
 gi|60465220|gb|EAL63315.1| threonyl-tRNA synthetase [Dictyostelium discoideum AX4]
          Length = 710

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+  I G  +    +  T +G  +D+    K +++ + K I +    I+ +
Sbjct: 149 HSSAHILGQAMERIYGGQLCIGPA--TSEGFYYDMAMGDKIVSAEDYKLINEVAQKIVQE 206

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
             P     + R+ A+          KY   +     + +   ++       LC G HV +
Sbjct: 207 KQPFERLAVPRDIALTMFKFN----KYKTEIISKIPQEDTVSLYRCGTLVDLCRGPHVPN 262

Query: 702 TGEIMLLYIVSESS 715
           T  I    +   SS
Sbjct: 263 TSYIKSFAVTKNSS 276


>gi|326800360|ref|YP_004318179.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
 gi|326551124|gb|ADZ79509.1| threonyl-tRNA synthetase [Sphingobacterium sp. 21]
          Length = 641

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 19/196 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ L        + +  HS+ HL+  AL  +        G  I   G  +DV  
Sbjct: 50  PIEKDASVRLLTWNDKDGKSTFWHSSAHLMAEALEALYPGTKFGIGPAIET-GFYYDVDF 108

Query: 624 -SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRV 678
             +P +S + K IED + ++       V + +++ DA+A       G +Y       +  
Sbjct: 109 GDRPFSSDDFKKIEDKMLELARTKSDYVRQQVSKSDALAYFTEK--GDEYKLDLIKDLAD 166

Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRA 731
            S+ +   G  +  LC G H+ +TG I  + + + +         R  + RI  +T  +A
Sbjct: 167 GSITFYTQGNFTD-LCRGPHIPNTGFIKAIKLTNVAGAYWRGDESRKQLTRIYGVTFPKA 225

Query: 732 ---RSHLMGQDEKLKS 744
                +L   +E  K 
Sbjct: 226 SELADYLHMIEEAKKR 241


>gi|313848445|emb|CBY17449.1| threonyl-tRNA synthetase [Chlamydophila psittaci RD1]
 gi|325506736|gb|ADZ18374.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
 gi|328915135|gb|AEB55968.1| threonyl-tRNA synthetase [Chlamydophila psittaci 6BC]
          Length = 635

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 73/219 (33%), Gaps = 29/219 (13%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSL--VLTIDYQNRRQLSINHSATHLLHHALST 599
           +I +    A  +           L    +L  V   D + R      H++ H+L  A+  
Sbjct: 25  KIKNSHYFAGVVINDQIKDLSTTLNEGDTLRFVTFTDPEGRE--IFLHTSAHILAQAILR 82

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NRED 658
           +    +   G  I   G  +D   +  I+  +   IE+ +  I      V  +   N+++
Sbjct: 83  LWPDAIPTIGPVIDQ-GFYYDFA-NLSISEDDFLMIENMMGQISEAKFAVQKKTFNNKQE 140

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSES 714
           A+   A           +     E E    +S      LC G H+ ST  +    ++  S
Sbjct: 141 ALNEFANNPFKV----ELIQELPEGESITAYSQGEFMDLCRGPHLPSTAPVKAFKLLRTS 196

Query: 715 SIRAGIR---------RIEAI---TGQRARSHLMGQDEK 741
              A  R         RI  +   T +  + HL   +E 
Sbjct: 197 --AAYWRGDPQRESLVRIYGVAFPTTKELKEHLHQLEEA 233


>gi|327288851|ref|XP_003229138.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Anolis
           carolinensis]
          Length = 706

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 1/142 (0%)

Query: 575 IDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +D+  R   ++  HS+ H+L  A     G+ +    S          +   + ++  +L 
Sbjct: 146 VDFDARDGQALFWHSSAHILGGAAERFYGALLCHGPSTEHGFFYDMYMDGERTVSGKDLP 205

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           ++++   DII +  P     ++RED +          +                  S  L
Sbjct: 206 ALQEICQDIIEEQCPFERLEVSREDLMQLFKHNKFKLRIISEKVRTPTAIVYRCGTSIDL 265

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G HV  TGEI  L ++  +S
Sbjct: 266 CRGPHVRHTGEIRALKLLKNAS 287


>gi|311747151|ref|ZP_07720936.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
 gi|126578860|gb|EAZ83024.1| threonine--tRNA ligase [Algoriphagus sp. PR1]
          Length = 649

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 17/177 (9%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS-AELKSIEDNVND 641
            +  HS+ HLL  AL  +        G  I   G  +DV   +     +EL++IE  + +
Sbjct: 72  NTFWHSSAHLLAEALEALHPGIKFGIGPPIET-GFYYDVDFGEKTLDGSELEAIEKKMVE 130

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALCGGT 697
           +  +    + + +++ DA+A       G +Y     + +   S+ + + G     LC G 
Sbjct: 131 LAREKNEYIRKDISKSDAVAYYQEK--GDEYKLDLLEGLEDGSITFYEQGNFVD-LCRGP 187

Query: 698 HVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           H+ +TG I  + + + +         R  + RI  +T  +A   L    E ++    
Sbjct: 188 HIPNTGFIKAVKLTNIAGAYWRGDENRKMLTRIYGVTFPKA-KELKEYLEMIEEAKK 243


>gi|29345832|ref|NP_809335.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
 gi|73919769|sp|Q8AAP2|SYT_BACTN RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|29337725|gb|AAO75529.1| threonyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 646

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 74/190 (38%), Gaps = 17/190 (8%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A G+      + R I      ++   D +   + +  H++ HLL  AL  +        G
Sbjct: 37  ACGVNGETYDLGRPINEDADFVLYKWDDEE-GKHAFWHTSAHLLAEALQELYPGIQFGIG 95

Query: 610 SCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
             I  +G  +DV   + +    +L +IE  + ++ A+   VV   +++ DA+        
Sbjct: 96  PAI-ENGFYYDVDPGEAVIKESDLPAIEAKMLELSAKKDAVVRESISKTDALKMFGDR-- 152

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------R 717
           G  Y   + +  +E      ++      LC G H+ +T  I  + + + +         R
Sbjct: 153 GETYKCEL-ISELEDGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTTVAGAYWRGHEDR 211

Query: 718 AGIRRIEAIT 727
             + RI  IT
Sbjct: 212 KMLTRIYGIT 221


>gi|47459403|ref|YP_016265.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
 gi|47458733|gb|AAT28054.1| threonyl-tRNA synthetase [Mycoplasma mobile 163K]
          Length = 579

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 14/178 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+A+HLL  A+  +  +     G  I  +G  +D    KP+   +LK I+  +  I  
Sbjct: 7   LNHTASHLLATAVLKLFPNTKLGFGPAID-EGFYYDFKFEKPLLEEDLKKIKKEMQKITK 65

Query: 645 QNLPVVTR----IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           QN  +         N E          L  K  +       +     +  + LC G H+ 
Sbjct: 66  QNYILEKHHGEDFFNSEKPFKKELYDELKQKGENVTFYAIKDPRLNKIIFNDLCLGNHIQ 125

Query: 701 STGEIMLLYIVSESSIRAGIRR----IEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           +  E+    ++S   I     R     E +T  R         E+L      LK  + 
Sbjct: 126 NVSEVKHFELLS---IAGAYWRGNSDKEQLT--RIYGTAWETQEELDQYLDLLKERKE 178


>gi|73919796|sp|Q5UX65|SYT_HALMA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 642

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 18/211 (8%)

Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577
           TP   E G  + D    IG G+            G+     + +   L  ++ L +  + 
Sbjct: 12  TPLEVERGSTVEDVAYEIGPGLGDD------TVAGVVDGELVDKHAPLTADVELEIVTES 65

Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
            +     + HSA H+   AL  +        G   T +G  +D+T    I   +L++IE 
Sbjct: 66  SDEYLDVLRHSAAHVFAQALQRLYSDAKLTIGPW-TDNGFYYDITG-VDIDEDDLEAIEA 123

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----AL 693
              +II ++L +   +++R+DA              D +   + + E+   ++      L
Sbjct: 124 EAEEIIEEDLDIERELVDRDDAFERYEDNQFK---QDILETEAADDEEVSFYTQGEFEDL 180

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
           C G HV STGEI    ++    I A   R E
Sbjct: 181 CQGPHVESTGEIGGFALLE---ISAAFWRGE 208


>gi|188586439|ref|YP_001917984.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|229558041|sp|B2A5P2|SYT_NATTJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|179351126|gb|ACB85396.1| Ser-tRNA(Thr) hydrolase, threonyl-tRNA synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 636

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 23/202 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+++H+L HA+  +  +     G  I  DG  +D      ++  +L+ I+  +  II 
Sbjct: 71  YRHTSSHILAHAVKRLYDNVKLGIGPPI-KDGFYYDFDLEHSLSDKDLEDIKKEMKKIIK 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN-----DRVRVVSVEYEDGGVHSSALCGGTHV 699
           ++LP+  ++  R++AI       +G  Y      D      +     G     LC G H+
Sbjct: 130 EDLPIERKVYKRDEAIEMF--KEMGEDYKIELIQDLGEDEEICCYQQGDFID-LCQGPHL 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            STG+I     +    +     R                   L+ +     + +  +   
Sbjct: 187 PSTGKIKDTA-LDLLKVAGAYWR------------GDENRAMLQRIYGTSFIKKSQLEEY 233

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           ++ + EE +K +     ++L L
Sbjct: 234 IQRL-EEAKKREHRKLGKELDL 254


>gi|296089916|emb|CBI39735.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNVN 640
           + +  HS+ H+L  AL    G  +         +G  +D  + +   + +  K IE  V 
Sbjct: 119 RDTFWHSSAHILGQALEMEYGCKLCIGPCTTRGEGFYYDAFYGELGLNEDHFKQIESGVL 178

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             + +  P     ++R  A+   +         ND     ++     G     LC G H+
Sbjct: 179 KAVGEKQPFERIEVSRNQALEMFSENSFKIEIINDLPEDKTITVYRCGP-LVDLCRGPHI 237

Query: 700 SSTGEIMLLYIVSESS-IRAGIR------RIEAIT---GQRARSHLMGQDEKLKSLASFL 749
            +T  +     +  SS    G R      R+  I+    +R + ++   +E  K     L
Sbjct: 238 PNTSFVKAFACLKASSAYWRGNRDRESLQRVYGISYPDSKRLKEYIARIEEAKKYDHRLL 297

Query: 750 KVSQG 754
            V Q 
Sbjct: 298 GVKQE 302


>gi|317503053|ref|ZP_07961132.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
 gi|315665826|gb|EFV05414.1| threonine--tRNA ligase [Prevotella salivae DSM 15606]
          Length = 649

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQ 645
           H++ HLL  AL  +        G  +        +     + S  +   IE  + ++  +
Sbjct: 73  HTSAHLLAEALQELYPQIQFGFGPAVENGFFYDVMPAEGQVISENDFAKIEAKMLELAKK 132

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
           + PVV + +++ +A+    A   G  Y        +E      ++      LC G H+  
Sbjct: 133 DEPVVRKEVSKAEALKEFKAD--GQTYKCEHIEQDLEDGTITTYTQGNFTDLCRGPHL-- 188

Query: 702 TGEIMLLYIVSESSIRAGIRRIEA 725
                ++  V  +S+     R +A
Sbjct: 189 -VSTGVIKAVKLTSVAGAFWRGDA 211


>gi|257068556|ref|YP_003154811.1| threonyl-tRNA synthetase [Brachybacterium faecium DSM 4810]
 gi|256559374|gb|ACU85221.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Brachybacterium
           faecium DSM 4810]
          Length = 666

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 26/180 (14%)

Query: 564 ILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
           +L    S+   +D  +   LS + HSA H+L  A+           G  IT DG  +D  
Sbjct: 46  VLAEGQSVEG-VDISSPDGLSILRHSAAHVLAQAVQKTNPEAKLGIGPPIT-DGFYYDFD 103

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR-----EDAIASGAAALLGTKYN--DR 675
            ++P T   LK++E  ++ II      V R ++      E+A       L+G K    D 
Sbjct: 104 VAEPFTPESLKALEKEMHRIIKSGQRFVRREISDDAARAEEASEPYKLELIGLKSTAEDA 163

Query: 676 VRVVSVEYEDGGVH------------SSALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
               SVE  +GG+              + LC G H+ +T  I     +       A   R
Sbjct: 164 AEGASVEVGEGGLTMYDNVDKKGQTVWTDLCRGPHLPTTKLIGNGFALT---RSAAAYWR 220


>gi|72092667|ref|XP_783700.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115650928|ref|XP_001185487.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 197

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 9/164 (5%)

Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765
             + ++     + G   +  + G R  S+L       K+L   LK      V +V++I +
Sbjct: 6   QAIKLLGAEKGKKGKTNLYFLAGNRVLSYLGKCYNNEKALNLSLKCGPDEHVQQVDKIQK 65

Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSKELKSVMDALQKKIQSG 823
             +           +L V +   +K+       +S    E DS+ +  V + +    ++ 
Sbjct: 66  SLKTANKTSLTVLRELAVLEARHYKLNPNRDPLLSIHRKEGDSEYMIIVANEVG--PENA 123

Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
           +++L    +      L+    D+++     +     A +L G G
Sbjct: 124 LMLLSTGEENGAGLFLVAGPTDIVE-----EAGPRVASLLEGKG 162


>gi|282883187|ref|ZP_06291786.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
 gi|281296999|gb|EFA89496.1| conserved hypothetical protein [Peptoniphilus lacrimalis 315-B]
          Length = 240

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 82/197 (41%), Gaps = 33/197 (16%)

Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           S+ + ID++NR +L  ++ A  +L   L  +  +++  +   + P G   ++  +K I+ 
Sbjct: 76  SVNIKIDWENRLKLMQDNLAIGIL--RLLILSDNNLKIDKYKVEPSGSYINL-LNKDISF 132

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
             +  +E+  N +I  NL V             G+  +         R+  ++Y+     
Sbjct: 133 KSIADLEELSNYLITSNLEVEN---------KDGSINIF--------RLGEIDYD----- 170

Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
                 G  +  TGEI  L I S +    GI RI   +G  A      + + L ++ ++L
Sbjct: 171 ------GPSLKRTGEIGFLIIKSVTKTLNGI-RINIASGTGAYKDYRKKLDTLNNIKNYL 223

Query: 750 KVS-QGNVVGRVEEIWE 765
            +  +  +   ++++  
Sbjct: 224 NLKDEDEIFSAIKKLKA 240


>gi|50954739|ref|YP_062027.1| threonyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71657985|sp|Q6AFC3|SYT_LEIXX RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|50951221|gb|AAT88922.1| threonyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 695

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 26/161 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+ T+        G  I  DG  +D   ++P T  +LK+++  ++ I  
Sbjct: 86  LRHSTAHVLAQAVQTVNPEAKLGIGPPI-ADGFYYDFDVAEPFTPEDLKALDKEMSRIQR 144

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYNDR------------------VRVVSV 681
                V R++  E+A A          L+G K +D                       +V
Sbjct: 145 AGQRFVRRVVTDEEARAELAGEPYKLELIGLKGSDAESAEVGGEESVEVGSGELTIYDNV 204

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           + + G      LC G H+ +T  I   + +  + + A   R
Sbjct: 205 DPKTGETIWKDLCRGPHLPNTRMIGNGWAL--TRVAAAYWR 243


>gi|260170790|ref|ZP_05757202.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|315919124|ref|ZP_07915364.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
 gi|313692999|gb|EFS29834.1| threonyl-tRNA synthetase [Bacteroides sp. D2]
          Length = 646

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 16/157 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKESDLPAIEAKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGT 697
           + A+   VV + + + DA+        G  Y   + +  +E      ++      LC G 
Sbjct: 128 LAAKKEDVVRKSIAKTDALKMFGDR--GETYKCEL-ISELEDGHITTYTQGAFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           H+ +T  I  + + + +         R  + RI  IT
Sbjct: 185 HLMTTAPIKAIKLTTVAGAYWRGHEDRKMLTRIYGIT 221


>gi|271968482|ref|YP_003342678.1| hypothetical protein Sros_7246 [Streptosporangium roseum DSM 43021]
 gi|270511657|gb|ACZ89935.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 281

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 73/257 (28%), Gaps = 67/257 (26%)

Query: 501 IVEEAVSGQKVEVVFDQTPFYA---EAGGQLGDTGCAIGDGIRLQITDVQKKAE------ 551
           +V     G +   +  +TPF+        Q  D G   G  +   +T   ++        
Sbjct: 22  VVGTVPVGDRYGTIVAETPFHPLDHTWPDQPADEGTIGGLAVVDCVTGAVEEGGETVHLG 81

Query: 552 ----------GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA----- 596
                     G       V  G +     + L +D   RR LS  H+A HL   A     
Sbjct: 82  GDIPVRRGTPGWNWLVVHVTDGPV-PGREVELVVDEARRRALSAGHTACHLTALALNAAL 140

Query: 597 ------------LSTILGSHVSQNGSCITPDGLRFDVTHSKPITS---------AELKSI 635
                       L        +   S I PDG +      K +            +L  I
Sbjct: 141 AGRWRKEIPADGLGHPDFDQTAITSSRILPDGSQDVYRLGKSLRRKGFTAEGLAEDLPEI 200

Query: 636 EDNVND----IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
              VND     IA + PV       E                   R       +G V   
Sbjct: 201 AQRVNDRLKAWIAADAPVWIDSPGSELTAR---------------RTWHCGLPEGEVAI- 244

Query: 692 ALCGGTHVSSTGEIMLL 708
             CGGTH+S T  +  +
Sbjct: 245 -PCGGTHLSRTSRLGSV 260


>gi|227908819|ref|NP_758514.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Mus musculus]
 gi|81896660|sp|Q8BLY2|SYTC2_MOUSE RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|26334063|dbj|BAC30749.1| unnamed protein product [Mus musculus]
          Length = 790

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 106/310 (34%), Gaps = 41/310 (13%)

Query: 417 SFNQALEEQRS----RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
                L EQR     RA AH     +   +     LK+     +    + ++    + E 
Sbjct: 70  GLRLRLAEQRRTEAGRAAAHEPPTQNQEKDTKKKRLKQSEPGREVKQPNFIKERLQLFET 129

Query: 473 RKVLCQK-PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
            K   Q  P        ++++   V  G+ V+    G++       TP+      Q+   
Sbjct: 130 LKTDHQLLPATQEKKNTNNVISVRVAGGKTVQ----GERW----KTTPY------QVA-- 173

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                +     +     K  G+           L  + ++ L +      Q    HS+ H
Sbjct: 174 AGISKELAEHTVIA---KVNGVLWDL----DRPLEGDSTVELLMFDNEEAQAVYWHSSAH 226

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           +L  A+    G H+         +G  +D     + ++S EL ++E+    II +  P  
Sbjct: 227 ILGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRVVSSTELSALENICKTIIKEKQPFE 284

Query: 651 TRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              ++++  +           +L  K +     V   Y  G +    LC G HV  TG+I
Sbjct: 285 RLEVSKDTLLEMFKYNKFKCRILKEKVDTPTTTV---YRCGPLID--LCKGPHVRHTGKI 339

Query: 706 MLLYIVSESS 715
             + I   SS
Sbjct: 340 KAIKIFKNSS 349


>gi|24657723|gb|AAH39225.1| Threonyl-tRNA synthetase-like 2 [Mus musculus]
          Length = 790

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 106/310 (34%), Gaps = 41/310 (13%)

Query: 417 SFNQALEEQRS----RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472
                L EQR     RA AH     +   +     LK+     +    + ++    + E 
Sbjct: 70  GLRLRLAEQRRTEAGRAAAHEPPTQNQEKDTKKKRLKQSEPGREVKQPNFIKERLQLFET 129

Query: 473 RKVLCQK-PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
            K   Q  P        ++++   V  G+ V+    G++       TP+      Q+   
Sbjct: 130 LKTDHQLLPATQEKKNTNNVISVRVAGGKTVQ----GERW----KTTPY------QVA-- 173

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
                +     +     K  G+           L  + ++ L +      Q    HS+ H
Sbjct: 174 AGISKELAEHTVIA---KVNGVLWDL----DRPLEGDSTVELLMFDNEEAQAVYWHSSAH 226

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           +L  A+    G H+         +G  +D     + ++S EL ++E+    II +  P  
Sbjct: 227 ILGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRVVSSTELSALENICKTIIKEKQPFE 284

Query: 651 TRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              ++++  +           +L  K +     V   Y  G +    LC G HV  TG+I
Sbjct: 285 RLEVSKDTLLEMFKYNKFKCRILKEKVDTPTTTV---YRCGPLID--LCKGPHVRHTGKI 339

Query: 706 MLLYIVSESS 715
             + I   SS
Sbjct: 340 KAIKIFKNSS 349


>gi|119953497|ref|YP_945706.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
 gi|254783510|sp|A1R0E4|SYT_BORT9 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|119862268|gb|AAX18036.1| threonyl-tRNA synthetase [Borrelia turicatae 91E135]
          Length = 583

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 15/197 (7%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K I   +L  IE  + +I+ 
Sbjct: 14  KRHSIAHVMAEAVIELFPNTKIAIGPPI-KDGFYYDFDFEKHIIEDDLLLIEQKMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
                V  ++ +E A+               + +          + + LC G H+ + G+
Sbjct: 73  TGSSFVKEVITKEQALMLFKDEPYKIDLIHELDIADEISIYKSHNFTDLCKGPHIDNMGK 132

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
           I         SI     R               +++ L  +   L  ++ ++   + ++ 
Sbjct: 133 IDP-KAFKLISIAGAYWR------------GDEKNKMLTRIYGTLWNNEKDLKAYL-KLR 178

Query: 765 EEYRKLQLIHAKRKLQL 781
           EE ++       R+L L
Sbjct: 179 EEIKRRDHRKLGRELDL 195


>gi|44662847|gb|AAS47505.1| threonyl tRNA synthetase [Deinococcus grandis]
          Length = 144

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 19/140 (13%)

Query: 591 HLLHHALSTILGSHVSQNGSCIT----------PDGLRFDVTHSKPITSAELKSIEDNVN 640
           H L H +S  +G +    G               +G   D    +P+   +L  IE  + 
Sbjct: 4   HSLGHVMSRAVGEYYKGKGYGADAIKRGVGPSIENGWYQDFDLPEPLKEEDLPEIEKIMR 63

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
           DII + L    R ++     A G A      Y   +     E E    ++      LC G
Sbjct: 64  DIITRGLDFTRREIS----KAEGLAQFPHDPYKQELIAGLPEDEPITFYTQGDYTDLCRG 119

Query: 697 THVSSTGEI-MLLYIVSESS 715
            H  +TG++     ++S S 
Sbjct: 120 PHFPNTGKLPGAFKLMSTSG 139


>gi|62078771|ref|NP_001014042.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Rattus
           norvegicus]
 gi|54035500|gb|AAH83878.1| Threonyl-tRNA synthetase-like 2 [Rattus norvegicus]
          Length = 553

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 103/295 (34%), Gaps = 37/295 (12%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK-PPIDLTN 486
           RA AH     +   +     LK+     +    + ++    + E  K   Q  P      
Sbjct: 85  RAAAHEPPTQNQEKDTKRKRLKDSEPNREVKQPNFIKERLQLFETLKTDHQLLPATQEKK 144

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++++   V  G+ V+    G++       TP+   AG         + +   +     
Sbjct: 145 NTNNVISVRVAGGKTVQ----GEEW----KTTPYQVAAG-----ISKELAENTVIA---- 187

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             K  G+           L  + ++ L +      Q    HS+ H+L  A+    G H+ 
Sbjct: 188 --KVNGVLWDL----DRPLEGDSTVELLMFDNEEAQAVYWHSSAHVLGEAMELYYGGHLC 241

Query: 607 QNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---- 661
                   +G  +D     + ++S EL ++E+    II +  P     ++++  +     
Sbjct: 242 YGPPI--ENGFYYDMFIGDRVVSSTELSALENICKTIIKEKQPFERLEVSKDSLLEMFKY 299

Query: 662 -SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                 +L  K +     V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 300 NKFKCRILKEKVDTPTTTV---YRCGPLID--LCKGPHVRHTGKIKAIKIFKNSS 349


>gi|227833256|ref|YP_002834963.1| Threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|262184240|ref|ZP_06043661.1| threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
 gi|254783518|sp|C3PGS1|SYT_CORA7 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|227454272|gb|ACP33025.1| Threonyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975]
          Length = 687

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 62/197 (31%), Gaps = 46/197 (23%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+           G  I  +G  FD   +KP T  +LK+IE  +  II 
Sbjct: 77  IRHSCGHVMAQAVQAEFPGTKLGIGPAI-ENGFYFDFQTAKPFTPEDLKAIEKRMKKIIK 135

Query: 645 QNLPVVTRIM----------------------------NREDAIASGAAALLGTKYNDRV 676
                   +                             + ++A   GA         D  
Sbjct: 136 GGQRFERHVYASTEEAEAALANEPFKLELVQDKGNVDPDSDEAAEVGA--------GDLT 187

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT-- 727
              +V    G V    LC G HV +T  I    +   S+        +AG++RI      
Sbjct: 188 HYDNVNPRTGEVEWFDLCRGPHVPTTKYIPAFTLTRSSAAYWRGDQTKAGLQRIYGTAFE 247

Query: 728 GQRARSHLMGQDEKLKS 744
            + A        E+ + 
Sbjct: 248 SKEALESYKTMVEEAEK 264


>gi|15898113|ref|NP_342718.1| hypothetical protein SSO1271 [Sulfolobus solfataricus P2]
 gi|229578267|ref|YP_002836665.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|229583026|ref|YP_002841425.1| alanyl-tRNA synthetase-like protein protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|284174138|ref|ZP_06388107.1| alanyl-tRNA synthetase-like protein protein [Sulfolobus
           solfataricus 98/2]
 gi|284996871|ref|YP_003418638.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus L.D.8.5]
 gi|13814466|gb|AAK41508.1| Alanyl-tRNA synthetase truncated homolog (alaS-like2) [Sulfolobus
           solfataricus P2]
 gi|228008981|gb|ACP44743.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|228013742|gb|ACP49503.1| alanyl-tRNA synthetase-like protein protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|261602812|gb|ACX92415.1| alanyl-tRNA synthetase-like protein protein [Sulfolobus
           solfataricus 98/2]
 gi|284444766|gb|ADB86268.1| alanyl-tRNA synthetase-like protein [Sulfolobus islandicus L.D.8.5]
          Length = 150

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H++  A+  +LG+      + +  +  R  V   +  +  E+  + +  N+ + 
Sbjct: 7   RTHTALHVVKGAVRKVLGAK-WTASTYVNSNHGRLTVKFERKPSDQEMDKVFELANEKVR 65

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +NLP++  ++ RE+A       +      +  VR +S+        S   C   H   T 
Sbjct: 66  KNLPIIIEVLPREEAERKYGDEIYDLFLISAEVRELSIVV--IPDWSINACNKQHTKFTS 123

Query: 704 EIMLL 708
           EI  +
Sbjct: 124 EIGEI 128


>gi|242033449|ref|XP_002464119.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
 gi|241917973|gb|EER91117.1| hypothetical protein SORBIDRAFT_01g012680 [Sorghum bicolor]
          Length = 739

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVN 640
           + +  HS+ H+L  ++    G  +         +G  +D  +  + +       IE    
Sbjct: 172 RDTFWHSSAHILGESIERAYGCKLCIGPCTTRGEGFYYDAYYKDQTLNEEHFGIIESQAK 231

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +A+  P     ++R +A+   A         N+     ++     G     LC G H+
Sbjct: 232 KAVAEKQPFERIEVSRAEALEMFAENEFKVEIINELPEDKTITVYRCGP-LVDLCRGPHI 290

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +     +  SS
Sbjct: 291 PNTSFVKAFACLKASS 306


>gi|118618602|ref|YP_906934.1| threonyl-tRNA synthetase [Mycobacterium ulcerans Agy99]
 gi|166225468|sp|A0PSZ4|SYT_MYCUA RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|118570712|gb|ABL05463.1| threonyl-tRNA synthetase ThrS [Mycobacterium ulcerans Agy99]
          Length = 691

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+  +        G  IT DG  +D    +P T  +L+++E  +  I+ 
Sbjct: 83  IRHSTAHVLAQAVQDLFPQAKLGIGPPIT-DGFYYDFEVLEPFTPDDLQALEKRMRQIVK 141

Query: 645 QNLPVVTRIMN------REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS------- 691
           +      R+         E A       L+  K  D   V+ V  ++   + +       
Sbjct: 142 EGQLFDRRVFESKDQAREELANEPYKVELVDDKSGDPD-VMEVGGDELTAYDNLNPRTRE 200

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS 715
                LC G H+S+T  I    +   S+
Sbjct: 201 RVWGDLCRGPHISTTKHIPAFKLTRSSA 228


>gi|89073112|ref|ZP_01159651.1| hypothetical metal-dependent hydrolase [Photobacterium sp. SKA34]
 gi|89051065|gb|EAR56522.1| hypothetical metal-dependent hydrolase [Photobacterium sp. SKA34]
          Length = 291

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 84/257 (32%), Gaps = 49/257 (19%)

Query: 507 SGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD------------------ 545
           SG +  +V   TPF+  +        D G  I    + Q+ +                  
Sbjct: 28  SGDENYIVTQSTPFHPVSHIWPDHPADQGKIIHADKQYQVNNCVVGAIDLETNSLFIAQD 87

Query: 546 --VQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601
             V++  +G       +  G +      ++ L++D + ++ LS  HSA HL   AL+ +L
Sbjct: 88  IPVKRDTDGWVFVVVHIITGTIDFDIGNTVTLSVDKEYQQSLSRGHSAGHLSSLALNKVL 147

Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAE--------------LKSIEDNVNDIIAQ-N 646
            +   +       +   +D        S                L+    N  D++A+ N
Sbjct: 148 HTDFWRKEPTRRDELGYYDFHSYAQEKSEVTPDLSTDTYRLGKTLRKRGLNSADLLAELN 207

Query: 647 LPVVTRIMNREDAIASGA---AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           L      +   D +A          G    D  R         GV     CGGTH+ S  
Sbjct: 208 LVAERINLQLSDWVALKTTVVMRREGDHLTD-SRYWQCNLGSEGVIEI-PCGGTHILSLS 265

Query: 704 E----IMLLYIVSESSI 716
           E     +   + S+  I
Sbjct: 266 EYQSVTVSFKVNSDQEI 282


>gi|309364909|emb|CAP23504.2| CBR-TARS-1 protein [Caenorhabditis briggsae AF16]
          Length = 729

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 39/213 (18%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+         +G  +D+ H ++ I   +   I+  V   +  
Sbjct: 158 HSSAHVLGEAMERYCGGHLCYGPPI--QEGFYYDMWHENRTICPEDFPKIDQIVKAAVKD 215

Query: 646 NLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                   M +ED +           ++  K N     V   Y  G +    LC G HV 
Sbjct: 216 KQKFERLEMTKEDLLEMFKYNEFKVRIIKEKINTPKTTV---YRCGPLID--LCRGPHVR 270

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG++  + I   SS                 S+  G+ +  +SL     +S  +     
Sbjct: 271 HTGKVKAMAITKNSS-----------------SYWEGKADA-ESLQRLYGISFPD----- 307

Query: 761 EEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK 790
            +  +E++KLQ   AK   RKL    +    H+
Sbjct: 308 SKQLKEWQKLQEEAAKRDHRKLGKEQDLFFFHQ 340


>gi|301779664|ref|XP_002925249.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Ailuropoda melanoleuca]
          Length = 890

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 74/212 (34%), Gaps = 39/212 (18%)

Query: 535 IGDGIRLQITDVQKKAEGIFV----HHAIVERGILRTEMSLVLTID---YQNRRQLS--- 584
             + I +++ D  K  EG       +    E    R E ++V  ++   +   R L    
Sbjct: 246 TSNVITVRVAD-GKTVEGEVWKTTPYQVAAEISPERAESTVVAKVNGELWDLDRPLEGDS 304

Query: 585 ---------------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPIT 628
                            HS+ H+L  A+    G H+         +G  +D     + ++
Sbjct: 305 TLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYDMFIGDRAVS 362

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEY 683
           S EL ++E+    II +  P     +++E  +               K N     V   Y
Sbjct: 363 STELSALENICKTIIKEKQPFERLEVSKEVLLEMFKYNKFKCRILNEKVNTPTTTV---Y 419

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
             G +    LC G HV  TG+I  + I   SS
Sbjct: 420 RCGPLID--LCKGPHVRHTGKIKTIKIFKNSS 449


>gi|148271707|ref|YP_001221268.1| putative metal-dependent hydrolase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829637|emb|CAN00553.1| putative metal-dependent hydrolase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 302

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 86/250 (34%), Gaps = 42/250 (16%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGG---QLGDTGCAIGDGIRLQITD------------- 545
           V++   G +  VV D T  +        Q  D       G  +++ D             
Sbjct: 32  VDDLADGTRA-VVLDATACHPVDAAWPDQPADRAVLRVRGAGIEVLDCVVGAASTDPAED 90

Query: 546 ----------VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
                     V+K A+G      H +     +R   ++ + +D ++RR LS  H+  HL 
Sbjct: 91  ATLHVGADVPVKKGADGWSFVAVHVVPGDSDVRVGDAVEVAVDPEHRRALSAGHTGCHLA 150

Query: 594 HHALSTILGSHVSQNGSCI-----TPDGLRFDVTHSKPITSAELKSIEDNVND------- 641
             AL   L    +++           D L    +   P +S +   +  ++         
Sbjct: 151 SLALDRALADAWTKDVPTDALGAPGFDALAIGTSRIGPWSSVDTYRLGKSLRKKGFVPAA 210

Query: 642 -IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +   +           + +ASGAAA +  + +      S   E  G  +   CGGTH++
Sbjct: 211 LVERLDEVRDAVDATLAEWVASGAAARIEREGDLLTSRRSWVCELPGGAARIPCGGTHLA 270

Query: 701 STGEIMLLYI 710
              E+  + I
Sbjct: 271 GLDELASITI 280


>gi|331697398|ref|YP_004333637.1| threonyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952087|gb|AEA25784.1| threonyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 682

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 21/155 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+  +        G  I  DG  +D   + P T  +LK +E  +  II 
Sbjct: 75  IRHSAAHVLAQAVQQLHPEAKLGIGPPI-RDGFYYDFDVATPFTPDDLKKLESAMKKIIK 133

Query: 645 QNLPVV-TRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVHS-------- 690
                   R  ++++A            L+  K  +   V      +  ++         
Sbjct: 134 AGQRFSRRRFADKDEARKELADEPYKLELIDLKGPEEDVVEIDASGELTIYDNVHAHTGE 193

Query: 691 ---SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              S LC G H+ +T  I      S +   A   R
Sbjct: 194 TVWSDLCRGPHLPTTRYIPAF---SLTRTAAAYWR 225


>gi|148979612|ref|ZP_01815617.1| hypothetical protein VSWAT3_08998 [Vibrionales bacterium SWAT-3]
 gi|145961697|gb|EDK26994.1| hypothetical protein VSWAT3_08998 [Vibrionales bacterium SWAT-3]
          Length = 299

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 85/264 (32%), Gaps = 67/264 (25%)

Query: 502 VEEAVSGQ-KVEVVFDQTPFYA-----------EAGGQLGDTGCAIGD------------ 537
           V+   S + K  ++ D TPF+            +     GD    + D            
Sbjct: 30  VQHVESDENKTYLITDVTPFHPVSHIWPDHPADKGTVNFGDLQYTVDDCLVGAIEQSTGK 89

Query: 538 ---GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                 + +    +    + VH        +     + L++D + +  LS  HSA H+  
Sbjct: 90  LYVAADIPVKRDTEGWVFVVVHQLSASASTISINEQVSLSVDKEYQASLSRGHSAGHVAF 149

Query: 595 HALSTILGSHVSQN-------------------GSCITPDGLRFDVTHSKPITS------ 629
            AL+ +L     +                     S +TP+  +      K +        
Sbjct: 150 LALNKVLADSYWRKDADRKDPLGSYDFNSYAQVTSFVTPELCKDTYRLGKTLKKRGLNVA 209

Query: 630 ---AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
              A L++IE ++N++++  L   T +             L G    D          D 
Sbjct: 210 DMLANLEAIESDINELVSVWLAQPTEVT----------MRLEGETLTDSRYWE--WQLDA 257

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI 710
               +  CGGTH+ +T E+  L +
Sbjct: 258 DTQVTIPCGGTHIGNTSELGALSV 281


>gi|296124433|ref|YP_003632211.1| threonyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
 gi|296016773|gb|ADG70012.1| threonyl-tRNA synthetase [Planctomyces limnophilus DSM 3776]
          Length = 736

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 8/136 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  HL+  A+  +    V      +   G  +D+     ++  +   IE  +  ++ 
Sbjct: 85  LRHSCAHLMARAIMRVFPG-VQLAFGPVKDQGYYYDLDLPHKLSEDDFARIEAEMQKLVE 143

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHV 699
              P    I NR++A+A      +G K       + +  E             LC G H+
Sbjct: 144 MAEPFERFITNRDEALAMLEG--MGQKLKCEHIQIGLASEATVSFYRQGEFVDLCRGPHI 201

Query: 700 SSTGEIMLLYIVSESS 715
              G I    ++S + 
Sbjct: 202 PDAGRIKAFRLLSVAG 217


>gi|224531616|ref|ZP_03672248.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
 gi|224511081|gb|EEF81487.1| threonyl-tRNA synthetase [Borrelia valaisiana VS116]
          Length = 581

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 27/242 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A                 D    +S+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQAFEIFKDEPYKIDLIKNFDLQNEISIYKSHNFVD---LCRGPHVDN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        + I     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTGIAGAYWR------------GNEKNTMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            + EE +K       RKL   ++  S H+      +    +   +K    + D  +++  
Sbjct: 176 NLREEIKK----RDHRKLGKELDLFSIHEEVGPGLVFFHPNG--AKIRSLIEDFWREEHS 229

Query: 822 SG 823
             
Sbjct: 230 KN 231


>gi|126663528|ref|ZP_01734525.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
 gi|126624476|gb|EAZ95167.1| threonine--tRNA ligase (threonine tRNA synthetase) [Flavobacteria
           bacterium BAL38]
          Length = 633

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 19/199 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
           +  HS +H++  AL  +        G  I  +G  +DV   +  IT A+ K IED V +I
Sbjct: 57  AFWHSTSHVMAQALEELFPGIKLTLGPAID-NGFYYDVDFGEQRITDADFKKIEDRVLEI 115

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +      R +++ +A+         T+    +   ++ + D       LC G H+ +T
Sbjct: 116 SREKHEFKMRPVSKAEALDVYKDNEYKTELISNLEDGTITFCDHANFFD-LCRGGHIPNT 174

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G I  + I+S   +     R               ++++L  +       Q ++   +E 
Sbjct: 175 GIIKAMKILS---VAGAYWR------------GDEKNKQLTRVYGISFPKQKDLTDYLE- 218

Query: 763 IWEEYRKLQLIHAKRKLQL 781
           + EE ++       ++L L
Sbjct: 219 LLEEAKRRDHRKLGKELDL 237


>gi|329943295|ref|ZP_08292069.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Chlamydophila psittaci Cal10]
 gi|328814842|gb|EGF84832.1| threonyl and Alanyl tRNA synthetase second additional domain
           protein [Chlamydophila psittaci Cal10]
          Length = 236

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 15/181 (8%)

Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSL--VLTIDYQNRRQLSINHSATHLLHHALST 599
           +I +    A  +           L    +L  V   D + R      H++ H+L  A+  
Sbjct: 25  KIKNSHYFAGVVINDQIKDLSTTLNEGDTLRFVTFTDPEGRE--IFLHTSAHILAQAILR 82

Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NRED 658
           +    +   G  I   G  +D   +  I+  +   IE+ +  I      V  +   N+++
Sbjct: 83  LWPDAIPTIGPVIDQ-GFYYDFA-NLSISEDDFLMIENMMGQISEAKFAVQKKTFNNKQE 140

Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSES 714
           A+   A           +     E E    +S      LC G H+ ST  +    ++  S
Sbjct: 141 ALNEFANNPFKV----ELIQELPEGESITAYSQGEFMDLCRGPHLPSTAPVKAFKLLRTS 196

Query: 715 S 715
           +
Sbjct: 197 A 197


>gi|76155587|gb|AAX26878.2| SJCHGC00901 protein [Schistosoma japonicum]
          Length = 358

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 100/271 (36%), Gaps = 45/271 (16%)

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYE------ 684
           +K +E     +I++N  +     +   A            +Y  +VR V +  E      
Sbjct: 17  IKQLEQKCQKLISENGFISIWDTDLAQATKVKEIRYFPWEEYASKVRTVFIRKEKHINDD 76

Query: 685 -----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                   V S+ LCGGTH+S   ++  + +V+    +  ++    I GQ A+      D
Sbjct: 77  HDLINSNSVISAELCGGTHLSELSDLQDIAVVAVKGRQKTVKEFTCIFGQSAKCAHQCAD 136

Query: 740 EKLKSLASFLKVSQGNVVGRV------EEIWEEYR---------KLQLIHAKRKLQLNVE 784
           + +K   S  K S  N   +       E +  + R         +L+L     ++    +
Sbjct: 137 DLIKEGQSREKDSIYNPDKKATHINWFESVLNDSRYTGFLPLYARLELEANLYRINHKTD 196

Query: 785 DLSCHKIA----DVNFMS--------HIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +  +++      +  +          +IS+ D   L  ++ AL++   +  +++     
Sbjct: 197 FIDNNQVQLYIDHIKLLIGNNYEVSRAVISKFDFHRLDELIVALRQFNMTLPLVIYNT-- 254

Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863
               ++ +    +L     A++LA   AK L
Sbjct: 255 ----NLAVCYFPNLSPNQTALNLAHAIAKRL 281


>gi|71894192|ref|YP_278300.1| threonyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 581

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            +NH+ +HLL  A+  +        G   T +G  +D    +P++ +EL  IE  +  + 
Sbjct: 7   ELNHTTSHLLAAAVLKLFPETKLGFGPA-TSEGFYYDFEFKEPLSDSELLKIEKMMKKLA 65

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           ++NL +    ++            L  ++  + + V+       ++       LC G HV
Sbjct: 66  SRNLKMKQVSLSDYSFDNQPYKKELYNEFKSQNKEVTFYTLADPLNKEKVFTDLCAGGHV 125

Query: 700 SSTGEIMLLYIVS-----ESSIRAGI--RRIEAITGQRARSHLMGQDEKLKS 744
             T  I    ++S            I   RI   T    +  L      LK 
Sbjct: 126 EDTKHIKHFKLLSLAGAYWRGNSDNIQLTRIYG-TSWETKEELDEFLAILKD 176


>gi|144574986|gb|AAZ43589.2| threonyl-tRNA synthetase [Mycoplasma synoviae 53]
          Length = 580

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 13/172 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            +NH+ +HLL  A+  +        G   T +G  +D    +P++ +EL  IE  +  + 
Sbjct: 6   ELNHTTSHLLAAAVLKLFPETKLGFGPA-TSEGFYYDFEFKEPLSDSELLKIEKMMKKLA 64

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
           ++NL +    ++            L  ++  + + V+       ++       LC G HV
Sbjct: 65  SRNLKMKQVSLSDYSFDNQPYKKELYNEFKSQNKEVTFYTLADPLNKEKVFTDLCAGGHV 124

Query: 700 SSTGEIMLLYIVS-----ESSIRAGI--RRIEAITGQRARSHLMGQDEKLKS 744
             T  I    ++S            I   RI   T    +  L      LK 
Sbjct: 125 EDTKHIKHFKLLSLAGAYWRGNSDNIQLTRIYG-TSWETKEELDEFLAILKD 175


>gi|332170840|gb|AEE20095.1| threonyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 648

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 14/201 (6%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I +G+   +   +      F    +     L  + S+ L     +  + +
Sbjct: 17  GATPMDVAKSISEGLARNVISAK------FNGQTVETSTPLTEDGSITLFTWNDDEGKTA 70

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDII 643
             HS++H+L  A+  +        G  I  +G  +DV    + I+  + KSIED + +I 
Sbjct: 71  FRHSSSHVLAQAILKLYPGAKLTIGPAI-ENGFYYDVDLGDQTISDKDFKSIEDKMLEIA 129

Query: 644 AQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   R + +++A+    A       +  + +   ++ + D    +  LC G H+ +
Sbjct: 130 RGKHDFSLRSVTKQEALDKYKAEGNEFKVELIENLEDGTITFCDHDDFTD-LCRGGHIPN 188

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG I  + I+S   +     R
Sbjct: 189 TGIIKAVKIMS---VAGAYWR 206


>gi|313678529|ref|YP_004056269.1| threonine--tRNA ligase [Mycoplasma bovis PG45]
 gi|312950500|gb|ADR25095.1| threonine--tRNA ligase [Mycoplasma bovis PG45]
          Length = 582

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ +HLL  A+  +   +V       T +G  +D   ++P++  EL  IE  +  + +
Sbjct: 9   LNHTTSHLLGAAVEMLYP-NVKLGFGPATDEGFYYDFDFAEPLSENELGKIEKLMKKLAS 67

Query: 645 QNL-PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG---GVHSSALCGGTHVS 700
           +NL  +       + A       L     +    +     +D     +    LC G H+ 
Sbjct: 68  RNLVTIKISEDEYDFANKPYKKELYDELKSQNKEITFYALQDPLNKEIVFKDLCAGNHIE 127

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  I    ++S   I     R
Sbjct: 128 STKNIKNFKLLS---IAGAYWR 146


>gi|315444753|ref|YP_004077632.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mycobacterium
           sp. Spyr1]
 gi|315263056|gb|ADT99797.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mycobacterium
           sp. Spyr1]
          Length = 695

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 31/188 (16%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+  +        G  IT DG  +D   ++P T   L+++E  +  I+ 
Sbjct: 76  IRHSAAHVLAQAVQEMFPDAKLGIGPPIT-DGFYYDFDVAEPFTPEHLQALEKKMRKIVK 134

Query: 645 QNLPVVTRIM-NREDAIAS-----GAAALLGTKYN-DRVRVVSVEYEDGGVHSS------ 691
                  R+  ++++A A          L+  K   +   V+ V  ++   + +      
Sbjct: 135 DGQIFERRVFGSKDEARAELASEPYKLELIDDKSGAEDPEVMEVGGDELTAYDNLNPRTR 194

Query: 692 -----ALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAITGQRARSHLMG 737
                 LC G H+ +T  I    +    S  A  R         RI   T   ++  L  
Sbjct: 195 ERVWGDLCRGPHIPTTRYIPAFTLTR--SSAAYWRGDQNNASLQRIYG-TAWESQEALDR 251

Query: 738 QDEKLKSL 745
             E ++  
Sbjct: 252 HLELIEEA 259


>gi|255035014|ref|YP_003085635.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947770|gb|ACT92470.1| threonyl-tRNA synthetase [Dyadobacter fermentans DSM 18053]
          Length = 647

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 81/221 (36%), Gaps = 26/221 (11%)

Query: 567 TEMSLVLTIDY-QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-S 624
           TE SLV  + +     + +  HS+ HLL  AL  +        G  I   G  +DV    
Sbjct: 57  TEDSLVKLLTWNDEDGKATFWHSSAHLLAEALEALYPGIKFGTGPSI-EKGFYYDVDLGG 115

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVS 680
           + I+  +   IE  + ++  Q    + + +++ +AI        G +Y     D +   S
Sbjct: 116 QTISQEDFPKIEAKMLELARQKNEYIRKPISKAEAIDYFTQK--GDEYKLELIDGLEDGS 173

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +   + G  +  LC G H+ +      +     ++I     R               +++
Sbjct: 174 ITLYEQGSFTD-LCRGPHIPN---TGFIKAAKLTNIAGAYWR------------NKQENK 217

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            L  +       Q  +   V  + EE +K       ++L+L
Sbjct: 218 MLTRIYGITFPKQKELEEYVT-LMEEAKKRDHRRLGKELEL 257


>gi|323446843|gb|EGB02865.1| hypothetical protein AURANDRAFT_17832 [Aureococcus anophagefferens]
          Length = 86

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 15/86 (17%)

Query: 580 RRQLSINHSATHLLHHALSTI-----LGSHVSQN----------GSCITPDGLRFDVTHS 624
           R +++ NH+ TH+L+ AL  +      G+               GS +  + LRFD    
Sbjct: 1   RVRVAPNHTMTHVLNFALREVLLGGSEGAKADAEKTGVDRCAQRGSYVDDERLRFDFAWD 60

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVV 650
            P+T+ +LK++E  VN+ IA  L V 
Sbjct: 61  APLTADQLKAVEAIVNETIAAGLVVD 86


>gi|156098721|ref|XP_001615376.1| threonyl-tRNA synthetase [Plasmodium vivax SaI-1]
 gi|148804250|gb|EDL45649.1| threonyl-tRNA synthetase, putative [Plasmodium vivax]
          Length = 912

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS+ H+L  +L  + G +++        +G  +D+      IT+   K +ED  + +
Sbjct: 267 AFWHSSAHILGSSLEKLFGGYLTIGPPL--KEGFYYDIYLGDFSITNEHYKKVEDEFSKL 324

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTH 698
           I +N      I  +E+ +          +    +R    E +   V+       LC G H
Sbjct: 325 IKENAEFEKLICTKEEVMDLFQYNPFKLEL---IRTKIPEGKKTSVYKCGNFIDLCLGPH 381

Query: 699 VSSTGEIMLLYIVSESS 715
           + STG+     ++  S+
Sbjct: 382 IKSTGKAKAFKVLKNSA 398


>gi|268532388|ref|XP_002631322.1| C. briggsae CBR-TRS-1 protein [Caenorhabditis briggsae]
          Length = 704

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 39/213 (18%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+         +G  +D+ H ++ I   +   I+  V   +  
Sbjct: 134 HSSAHVLGEAMERYCGGHLCYGPPI--QEGFYYDMWHENRTICPEDFPKIDQIVKAAVKD 191

Query: 646 NLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                   M +ED +           ++  K N     V   Y  G +    LC G HV 
Sbjct: 192 KQKFERLEMTKEDLLEMFKYNEFKVRIIKEKINTPKTTV---YRCGPLID--LCRGPHVR 246

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG++  + I   SS                 S+  G+ +  +SL     +S  +     
Sbjct: 247 HTGKVKAMAITKNSS-----------------SYWEGKADA-ESLQRLYGISFPD----- 283

Query: 761 EEIWEEYRKLQLIHAK---RKLQLNVEDLSCHK 790
            +  +E++KLQ   AK   RKL    +    H+
Sbjct: 284 SKQLKEWQKLQEEAAKRDHRKLGKEQDLFFFHQ 316


>gi|154148459|ref|YP_001406198.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
 gi|171769701|sp|A7I107|SYT_CAMHC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|153804468|gb|ABS51475.1| threonyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381]
          Length = 609

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV----THSKPITSAELKSIEDNVN 640
           I HS  HL+  A+  +  +     G  I  DG  +D      + + +   +L++IE  + 
Sbjct: 43  IRHSCAHLMAQAILALYPNAKFFVGPAI-EDGFYYDFRVTKENGEKLGKEDLQAIEKKMK 101

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           + I     +      + +         L  +   R+    V     G     +C G HV 
Sbjct: 102 EFIDAKEEIAKICSTKSEIANEFKNDDLKQEVLKRIPDGEVSVYKQGDFKD-ICRGPHVP 160

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +T  +    +               + G  A      + E L  +       + N+   +
Sbjct: 161 NTKFLRFFKLTR-------------VAG--AYLGGDEKREMLTRIYGTAFADKENLNEYL 205

Query: 761 EEIWEEYRK 769
             I EE +K
Sbjct: 206 -RILEEAKK 213


>gi|207109516|ref|ZP_03243678.1| alanyl-tRNA synthetase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441
            G PLD+  D+L + G A +D+  F   ++EQ  R++A   G  +   
Sbjct: 18  FGFPLDLTNDMLRSHG-ACVDMQGFELCMQEQVKRSKASWKGKQNNAD 64


>gi|312886253|ref|ZP_07745867.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301278|gb|EFQ78333.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Mucilaginibacter
           paludis DSM 18603]
          Length = 641

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 23/178 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS+ HL+  AL  +        G  I   G  +DV    +  +S E K IED + ++
Sbjct: 70  TYWHSSAHLMAEALEALYPGTKFGIGPAIET-GFYYDVDFGDREFSSDEFKKIEDKIIEL 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH------SSALCGG 696
                  V + +++ DAI          K ++    +  +  DG +        + LC G
Sbjct: 129 AKTKSDFVRKPVSKADAIEY-----FTEKDDEYKLDLIKDLPDGSITFYTQGNFTDLCRG 183

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARS---HLMGQDEKLKS 744
            H+ +TG I  + ++S +         R  + RI A+T  +A     +L   +E  K 
Sbjct: 184 PHIPNTGFIKAVKLMSVAGAYWRGDESRKQLTRIYAVTFPKASELTDYLHLIEEAKKR 241


>gi|228472826|ref|ZP_04057584.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275877|gb|EEK14643.1| threonine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 649

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
           +  HS+ H+L  AL  +  +     G  I  +G  +DV  +   IT  +  +IE  + +I
Sbjct: 70  AFWHSSAHILAQALEELYPNIKLTIGPAI-ANGFYYDVDFNGNTITDKDFPAIEAKMLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                    R +++ +A++         T+  + +   S+ + D    +  LC G H+ +
Sbjct: 129 ARGKYEFKMRPVSKAEALSYYKGKNEYKTELIEALEDGSITFCDHSTFTD-LCRGGHLPN 187

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG +  + I+S   +     R
Sbjct: 188 TGFVKAVKILS---VAGAYWR 205


>gi|256825369|ref|YP_003149329.1| threonyl-tRNA synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688762|gb|ACV06564.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Kytococcus
           sedentarius DSM 20547]
          Length = 660

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 73/222 (32%), Gaps = 36/222 (16%)

Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581
           AE G    D     GD  R+  T V  +   ++          +     +   +  +   
Sbjct: 15  AETGTTGTD---LFGDDRRVVATRVNGELRDLYR--------EVADGDEVEAVLIDEPDG 63

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
              + HSA H+L  A+           G  IT DG  +D   ++P T  +LK +   +  
Sbjct: 64  LDILRHSAAHVLAQAVQQEFADAKLGIGPPIT-DGFYYDFDVAEPFTPEDLKKLSKTMQR 122

Query: 642 IIAQNLPVVTRIMNREDAI-----ASGAAALLGTKY---------------NDRVRVVSV 681
           II +    V R ++  DA            L+G K                  ++ +   
Sbjct: 123 IINEGQTFVRREVSDADAQVELAGEPYKVELIGLKGGSAEEAAEGASAEVGGAQLTIYDN 182

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
             +DG V    LC G H+ ST  I     +       A   R
Sbjct: 183 VRKDGTVAWGDLCRGPHLPSTKLIGNGFALT---RSAAAYWR 221


>gi|146297790|ref|YP_001192381.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
 gi|189083608|sp|A5FP01|SYT_FLAJO RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|146152208|gb|ABQ03062.1| threonyl-tRNA synthetase [Flavobacterium johnsoniae UW101]
          Length = 648

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS +H++  AL  +        G  I  +G  +DV    + I+ A+ K IED + +I
Sbjct: 70  AFWHSTSHVMAQALEELYPGIKLTLGPAI-ANGFYYDVDFEDQKISEADFKKIEDRILEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                    R + + +A+      +  T+    +   ++ + D    +  LC G H+ +T
Sbjct: 129 ARGKFDFKMRPVTKAEALEMYKDNVYKTELISNLEDGTITFCDHATFTD-LCRGGHIPNT 187

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G I  + I+S   +     R
Sbjct: 188 GIIKAVKIMS---VAGAYWR 204


>gi|240047776|ref|YP_002961164.1| threonyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581]
 gi|239985348|emb|CAT05361.1| Threonyl-tRNA synthetase [Mycoplasma conjunctivae]
          Length = 578

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
              S+NHS +HLL  A+ T+    V       T +G  +D   S PI++ +L  IE  + 
Sbjct: 6   FDKSLNHSTSHLLALAIKTLYPD-VKLGFGPSTKEGFYYDFEFSTPISNLDLPKIEKLMK 64

Query: 641 DIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRV--VSVEYEDGGVHSSALCGGT 697
            +++ NL +  T   N + +       LL    +    +   S+      +    LC G 
Sbjct: 65  KLVSSNLQILQTDGKNIDFSTQIYKKELLEEFESQNKNITFYSIVDAKNNILFEDLCVGG 124

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV     I    ++   +I     R
Sbjct: 125 HVGEIKNIKHFKLL---NIAGAYWR 146


>gi|223997660|ref|XP_002288503.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
 gi|220975611|gb|EED93939.1| threonyl-trna synthetase [Thalassiosira pseudonana CCMP1335]
          Length = 592

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-------------ELKSIEDNV 639
           +  A+           G  I  +G  +D    +   +              +LK+I+  +
Sbjct: 1   MAMAVQQTFPEAQVTIGPWID-NGFYYDFYFPETTDAETGEAIPSRKLSDQDLKAIKKAM 59

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAA--ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + II  + P++   ++RE+A     +       +  D ++   +     G     LC G 
Sbjct: 60  DKIIGADYPIIREEVSREEAKKRIESINEPFKLEILDSIKTEPITIYSIGDEWWDLCAGP 119

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           HV STG++     ++  S+     R
Sbjct: 120 HVESTGQL-PKKAIALQSVAGAYWR 143


>gi|168064726|ref|XP_001784310.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664141|gb|EDQ50872.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 685

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 4/155 (2%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L     ++ + +  HS+ H+L  ++    G  +         +G  +D  +
Sbjct: 99  PLEGDCTLQLHKFESDKGRDTFWHSSAHILGQSIEMTYGCKLCIGPCTTRGEGFYYDAFY 158

Query: 624 SKPITSA--ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVS 680
                +   +   I+   N  +    P     + RE A+   A         N+     +
Sbjct: 159 HGLTLTEKDDFGKIQAQANKAVKDKQPFERIEVTREQALEFFAENPFKVEIINELPEDKT 218

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +     G     LC G H+ ST  +     +  S+
Sbjct: 219 ITVYRCGP-LVDLCRGPHIPSTSHVKAFACLRASA 252


>gi|149057085|gb|EDM08408.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Rattus norvegicus]
          Length = 790

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 103/295 (34%), Gaps = 37/295 (12%)

Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK-PPIDLTN 486
           RA AH     +   +     LK+     +    + ++    + E  K   Q  P      
Sbjct: 85  RAAAHEPPTQNQEKDTKRKRLKDSEPNREVKQPNFIKERLQLFETLKTDHQLLPATQEKK 144

Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV 546
             ++++   V  G+ V+    G++       TP+   AG         + +   +     
Sbjct: 145 NTNNVISVRVAGGKTVQ----GEEW----KTTPYQVAAG-----ISKELAENTVIA---- 187

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             K  G+           L  + ++ L +      Q    HS+ H+L  A+    G H+ 
Sbjct: 188 --KVNGVLWDL----DRPLEGDSTVELLMFDNEEAQAVYWHSSAHVLGEAMELYYGGHLC 241

Query: 607 QNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---- 661
                   +G  +D     + ++S EL ++E+    II +  P     ++++  +     
Sbjct: 242 YGPPI--ENGFYYDMFIGDRVVSSTELSALENICKTIIKEKQPFERLEVSKDSLLEMFKY 299

Query: 662 -SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                 +L  K +     V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 300 NKFKCRILKEKVDTPTTTV---YRCGPLID--LCKGPHVRHTGKIKAIKIFKNSS 349


>gi|188994826|ref|YP_001929078.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
 gi|238691475|sp|B2RJD6|SYT_PORG3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|188594506|dbj|BAG33481.1| threonyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277]
          Length = 653

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 25/209 (11%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG    D   +I   ++  +       +   +H        +  +  + L        +
Sbjct: 15  EAGITGWDIAGSISPRLQQDVLAAGVNGQVWDLHR------PINEDAEVKLFKWDDAEGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  HS+ HL+  AL  +        G  I  +G  +DV   +   I  A+L +IE  + 
Sbjct: 69  HAFWHSSAHLMAEALEELYPGIKFGIGPAI-ENGFYYDVDPGEGISIKDADLPAIEKRMQ 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-------AL 693
           D+ A+   ++ R + + DA+      + G K +D+ +V  +     G  ++        L
Sbjct: 128 DLAARKETIIRRDIAKADAL-----RMFGDK-DDQYKVELISELADGTITTYTQGGFTDL 181

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           C G H+ +TG I  + ++S   +     R
Sbjct: 182 CRGPHLPNTGYIKAIKLLS---VAGAYWR 207


>gi|225424719|ref|XP_002265302.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086530|emb|CBI32119.3| unnamed protein product [Vitis vinifera]
          Length = 686

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNVN 640
           + +  HS+ H+L  AL    G  +         +G  +D  + +   + +  K IE    
Sbjct: 119 RDTFWHSSAHILGQALEVAYGCKLCIGPCTTRGEGFYYDAFYGELGLNEDHFKEIESGAL 178

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             + +  P     ++R  A+   +         ND     ++     G     LC G H+
Sbjct: 179 KAVGEKQPFERIEVSRNQALELFSENSFKIEIINDLPEDKTITVYRCGP-LVDLCRGPHI 237

Query: 700 SSTGEIMLLYIVSESSI-------RAGIRRIEAIT---GQRARSHLMGQDEKLKSLASFL 749
            +T  +     +  SS        R  ++R+  I+    +R + ++   +E  K     L
Sbjct: 238 PNTSFVKAFACLKASSAYWRGNKDRESLQRVYGISYPDSKRLKEYIARIEEAKKYDHRLL 297

Query: 750 KVSQG 754
            V Q 
Sbjct: 298 GVKQE 302


>gi|153833550|ref|ZP_01986217.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148870201|gb|EDL69142.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 292

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 92/267 (34%), Gaps = 66/267 (24%)

Query: 502 VEEAVSGQKVEVVFDQ-TPFYAEA---GGQLGDTGCAIGDGIRLQITD------------ 545
           V+   S ++V  V  + TPF+  +        D G     GI  ++ D            
Sbjct: 24  VQLVHSTEEVTYVLTEITPFHPVSHIWPDHPADKGTLTIKGISYEVADCQVGAVELASGE 83

Query: 546 --------VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                   V++  EG    V H +     ++   + +L +D + +  LS  HSA H+ + 
Sbjct: 84  LHVGTAIPVKRDTEGWEFVVVHVLSRTDAIKVGDTALLEVDKEYQLSLSRGHSAGHIAYL 143

Query: 596 ALSTILGSHVS-------------------QNGSCITPDGLRFDVTHSKPITS------- 629
           AL+ +L  +                     Q  S +TPD         K +         
Sbjct: 144 ALNKVLAQNYWRKDADRKDPHGNYDFNSYAQETSFVTPDKCLDTYRLGKTLRKRGLNSAD 203

Query: 630 --AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             ++LKSIE  VN ++          + R+ AI        G    D  R    +  +G 
Sbjct: 204 MLSDLKSIEQQVNVLLED-------WLKRDMAITIDC---HGEHLTD-SRYWQCDLGEGE 252

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSES 714
           + +   CGGTH S   +   + +    
Sbjct: 253 I-AVIPCGGTHASHLRDFGSIQVTLVE 278


>gi|323344262|ref|ZP_08084488.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
 gi|323094991|gb|EFZ37566.1| threonine--tRNA ligase [Prevotella oralis ATCC 33269]
          Length = 654

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 16/177 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ L        + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PINEDATIALYKFEDEEGKHTFWHTSAHLLAEALQELYPGIQFGFGPAI-ENGFFYDVMP 108

Query: 624 SKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
            K   I+ ++   IE  + ++  ++  VV + +++ DA+    A   G  Y        +
Sbjct: 109 KKGDVISESDFPKIEAKMMELAKKDEQVVRKSLSKADALKEFKAD--GQVYKCEHIDQDL 166

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
           E      ++      LC G H+ STG I  + I S +         R  + RI  IT
Sbjct: 167 EDGTITTYTQGAFTDLCRGPHLMSTGLIKAVKITSVAGAFWRGDAKREQLTRIYGIT 223


>gi|163756231|ref|ZP_02163346.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
 gi|161323843|gb|EDP95177.1| uracil phosphoribosyltransferase [Kordia algicida OT-1]
          Length = 647

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 26/203 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS+ H+L  A+  +        G  I  +G  +DV    + IT  + K+IED + +I
Sbjct: 70  AFWHSSAHILAQAILELYPDAKLWVGPAID-NGFYYDVDMGDETITDKDFKTIEDKMLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                    R   +E+A+A          +  + +   ++ + D    +  LC G H+ +
Sbjct: 129 ARGKHDFKMRSATKEEALAYYKDRNDYKVELVEGLEDGTITFCDHDTFTD-LCRGGHIPN 187

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNVVG 758
           TG +  + ++S             + G    ++  G +   K L     VS   Q  +  
Sbjct: 188 TGIVKAVKVMS-------------VAG----AYYKGDENN-KQLTRIYGVSFPKQKELKE 229

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL 781
            +  + EE +K       ++L+L
Sbjct: 230 YL-HLLEEAKKRDHRKLGKELEL 251


>gi|54020620|ref|YP_116116.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
 gi|53987793|gb|AAV27994.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 232]
          Length = 579

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
              +NHS++HLL  A+  +    V      +  DG  +D   S  I+ ++   IE  +  
Sbjct: 6   DYKLNHSSSHLLALAIKILYPD-VKFGIGPVFDDGFYYDFDLSVSISQSDFPKIEKLMKK 64

Query: 642 IIAQNLP-VVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           ++++NL  V T   N +       A L     K  +++   S+      +    LC G H
Sbjct: 65  LVSKNLKIVETDGKNLDFQNQIYKAELKNDLEKKGEKITYFSIVDSKNNILFEDLCYGNH 124

Query: 699 VSSTGEIMLLYIVS 712
           + S G+I    ++ 
Sbjct: 125 LESLGKIQNFKLLK 138


>gi|149200279|ref|ZP_01877300.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
 gi|149136643|gb|EDM25075.1| threonyl-tRNA synthetase [Lentisphaera araneosa HTCC2155]
          Length = 603

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDII 643
           I HS  H+L  A+  +        G  I   G  +D   S+   +  +LK IE  +  II
Sbjct: 10  IRHSMAHVLAQAVQEVYPKVKLGFGPPIET-GFYYDFDFSEEEFAENKLKEIEKRMKKII 68

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR------VVSVEYEDGGVHSSALCGGT 697
            +         + E A+A       G    + VR      V    + + G  +  LC G 
Sbjct: 69  GRKQEFHYSETDIEGAVAKLEDLGEGEYKIENVRNLHSRGVEKFSFYENGNFAD-LCEGP 127

Query: 698 HVSSTGEIMLLYIVSESSIRAGIR----------RIEAIT 727
           HV +TG++          +               RI A+ 
Sbjct: 128 HVETTGDLPA-KAFKLDRVAGAYWLGSEKNKQLTRIYALC 166


>gi|213963363|ref|ZP_03391619.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
 gi|213954031|gb|EEB65357.1| threonyl-tRNA synthetase [Capnocytophaga sputigena Capno]
          Length = 647

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDI 642
           +  HS+ H+L  AL  +        G  I  +G  +DV  + KPI+  +  +IE    +I
Sbjct: 70  AFWHSSAHILAQALEELYPGIKLTIGPAI-ANGFYYDVDFNGKPISEKDFPAIEAKFLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                    R +++ +A++  A      T+  + +   ++ + D    +  LC G H+ +
Sbjct: 129 ARGKHEFKMRPVSKAEALSYYAGKNEYKTELIEALEDGTITFCDHSTFTD-LCRGGHIPN 187

Query: 702 TGEIMLLYIVS 712
           TG +  + ++S
Sbjct: 188 TGFVKAVKVLS 198


>gi|253755215|ref|YP_003028355.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
 gi|251817679|emb|CAZ55427.1| threonyl-tRNA synthetase [Streptococcus suis BM407]
          Length = 650

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K   G F    I     +  + +L + +   +     + HSA HL   A   +      
Sbjct: 33  KKALAGKFNGKLIDTTRAIDEDGTLEIVMPDHDDALDILRHSAAHLFAQAARRLFSDIKL 92

Query: 607 QNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA 666
             G  I           +  I++ +L  I++ +  I+ +N P   R + +E+A+      
Sbjct: 93  GVGPAIQDGFYYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALEIFKND 152

Query: 667 LLGT----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                   +++D    +++  +        LC G HV STG I +  ++   ++     R
Sbjct: 153 PYKLELIHEHSDDEGGLTIYTQG---EYVDLCRGPHVPSTGRIQIFELL---NVAGAYWR 206


>gi|229820470|ref|YP_002881996.1| threonyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
 gi|229566383|gb|ACQ80234.1| threonyl-tRNA synthetase [Beutenbergia cavernae DSM 12333]
          Length = 671

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 27/167 (16%)

Query: 565 LRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
           LR    +   TID  +   +   HS  H+L  A+  +        G  IT DG  +D   
Sbjct: 47  LRDGAHVEGVTIDSPDGLAILR-HSTAHVLAQAVQQVNPDAKLGIGPPIT-DGFYYDFDV 104

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRV 678
             P T  +LK++E  +  I+ +      R+++ ++A A          L+G K       
Sbjct: 105 ETPFTPEDLKALEKAMARIVKEGQTFRRRVVSDDEARAELADEPYKLELIGLKGPGAASA 164

Query: 679 VSVEYEDGG-------------------VHSSALCGGTHVSSTGEIM 706
                 + G                   V    LC G H+ ST  I 
Sbjct: 165 AEGAGAEVGAGELTIYDNVRGAGRETETVVWKDLCRGPHLPSTRLIG 211


>gi|308509394|ref|XP_003116880.1| CRE-TARS-1 protein [Caenorhabditis remanei]
 gi|308241794|gb|EFO85746.1| CRE-TARS-1 protein [Caenorhabditis remanei]
          Length = 749

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 36/197 (18%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+         +G  +D+ H ++ I+  +   I+  V   +  
Sbjct: 178 HSSAHVLGEAMERYCGGHLCYGPPI--EEGFYYDMWHENRTISPEDFPKIDQIVKAAVKD 235

Query: 646 NLPVVTRIMNREDAIASGA-----AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                   M +E+ +           ++  K N     V   Y  G +    LC G HV 
Sbjct: 236 KQKFERLEMTKENLLEMFKYNEFKVRIIKEKINTPKTTV---YRCGPLID--LCRGPHVR 290

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
            TG++  + I   SS                 S+  G+ +  +SL     +S  +     
Sbjct: 291 HTGKVKAMAITKNSS-----------------SYWEGKADA-ESLQRLYGISFPD----- 327

Query: 761 EEIWEEYRKLQLIHAKR 777
            +  +E++KLQ   AKR
Sbjct: 328 SKQLKEWQKLQEEAAKR 344


>gi|258651074|ref|YP_003200230.1| hypothetical protein Namu_0830 [Nakamurella multipartita DSM 44233]
 gi|258554299|gb|ACV77241.1| conserved hypothetical protein [Nakamurella multipartita DSM 44233]
          Length = 291

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 87/257 (33%), Gaps = 48/257 (18%)

Query: 505 AVSGQKVEVVFDQTPFYA---EAGGQLGDTGCAIGDGIRLQITDVQK------------- 548
           A +  ++ VV D+TPF+        Q  D G    DG    + D +              
Sbjct: 27  ARADGELGVVTDRTPFHPLDPTWPDQGPDLGTIGVDGRSAAVLDCRVGAWDGTDLFVGSA 86

Query: 549 ------KAEGIFVHHAIVERGILRT--EMSLVLTIDYQNRRQLSINHSATHLLHHAL--- 597
                 +    FV   ++  G L       + LT+D Q+R  LS  H+  HL   AL   
Sbjct: 87  VPVRRGEPGWTFVVVHVLAAGPLEVASGDEVTLTVDEQHRAALSAGHTGCHLAALALNAA 146

Query: 598 ---STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI------IAQNLP 648
                     V   G     D      +  +P  S +   +  ++         +A +LP
Sbjct: 147 LAGRWRKQPRVDSLGHP-DFDQSAITSSRIEPFGSVDEYRLGRSLRRSGFDAAGLADDLP 205

Query: 649 VVTRIMN-----REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +T  +         A       + G    DR   V +  +     +   CGGTHV ST 
Sbjct: 206 ALTETVTATLDRWAAAAGEVRVEVAGPGLADRREWVCLLPDGP---ARIPCGGTHVRSTA 262

Query: 704 EIMLLYI---VSESSIR 717
           ++  + +   + ES  +
Sbjct: 263 DVAPIRVHLTLDESGSQ 279


>gi|83816191|ref|YP_446893.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
 gi|83757585|gb|ABC45698.1| threonyl-tRNA synthetase [Salinibacter ruber DSM 13855]
          Length = 694

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSA 630
           +LT D +  +Q +  HS+ HL+  AL  +        G  I   G  +DV    + +++ 
Sbjct: 104 ILTWDDEEGKQ-TFWHSSAHLMAEALQALYPDVKFTIGPPID-QGFYYDVDLGDQTLSAD 161

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YED 685
           EL++IE+ + ++  ++       +++ DAI    A   G +Y   +     E     YE 
Sbjct: 162 ELEAIEEKMLELARRDAAYERHEVSKADAIEHYEA--EGNEYKLELIEGLEEGEISFYEQ 219

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           G      LC G H+ STG+I    ++S   +     R
Sbjct: 220 GEFTD--LCRGPHIPSTGDIKAPKLLS---VAGAYWR 251


>gi|194246566|ref|YP_002004205.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma mali]
 gi|254783531|sp|B3R0I8|SYT_PHYMT RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|193806923|emb|CAP18352.1| Threonyl-tRNA synthetase [Candidatus Phytoplasma mali]
          Length = 640

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 11/169 (6%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
            +NH+ +HL+ HALS I   ++         +G  +D+   +  I++ +  SIE  ++ I
Sbjct: 70  MLNHTTSHLMLHALS-IKYPNILPTSGNFNEEGFYYDIDFQEHKISNHDFDSIEKKMHQI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             + L ++ +    E A+          +     +   +     G     LC   H+ +T
Sbjct: 129 AEKKLDILKKEFTYEQALEIFKNNHYKKELLQENKNKKINIYKQGDFID-LCSDLHIINT 187

Query: 703 GEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMGQDEKLKS 744
             I    ++  S       S R  I RI   T    R+ L    + L+ 
Sbjct: 188 KLIKYFKLLKISGAYFKGNSNRKQIIRIYG-TSFFNRNDLNNHLKILQE 235


>gi|255030426|ref|ZP_05302377.1| alanyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 32

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 3  NVSSIRTTFLEFFQKNGHELLPSSSLIP 30
          + + +R  FL+FF++ GH + PS+ L+P
Sbjct: 5  SSAEVRQLFLDFFKEKGHTIEPSAPLVP 32


>gi|298384716|ref|ZP_06994276.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
 gi|298262995|gb|EFI05859.1| threonine--tRNA ligase [Bacteroides sp. 1_1_14]
          Length = 646

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 17/190 (8%)

Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
           A G+      + R I      ++   D +   + +  H++ HLL  AL  +        G
Sbjct: 37  ACGVNGETYDLGRPINEDADFVLYKWDDEE-GKHAFWHTSAHLLAEALQELYPGIQFGIG 95

Query: 610 SCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
             I  +G  +DV   + +    +L  IE  + ++ A+   VV   +++ DA+        
Sbjct: 96  PAI-ENGFYYDVDPGEAVIKESDLPVIEAKMLELSAKKEAVVRESISKTDALKMFGDR-- 152

Query: 669 GTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSI-------R 717
           G  Y   + +  +E      ++      LC G H+ +T  I  + + + +         R
Sbjct: 153 GETYKCEL-ISELEDGHITTYTQGAFTDLCRGPHLMTTAPIKAIKLTTVAGAYWRGHEDR 211

Query: 718 AGIRRIEAIT 727
             + RI  IT
Sbjct: 212 KMLTRIYGIT 221


>gi|291550699|emb|CBL26961.1| threonyl-tRNA synthetase /Ser-tRNA(Thr) hydrolase [Ruminococcus
           torques L2-14]
          Length = 650

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 24/201 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + H+A+H++  A+ T+        G  I   G  +D    +  +  +L +IE  +  II 
Sbjct: 70  LRHTASHVMAEAVQTLFPEAKVAIGPSIDT-GFYYDFEC-QSFSRDDLDAIEKEMKKIIK 127

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +   +     +REDAIA          Y   +     E E+   +S      LC G H+ 
Sbjct: 128 KGAKIERFTKSREDAIAFF--KEKNEPYKVELIEDLPEGEEISFYSQGDWVDLCAGPHLM 185

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           ST  I    ++S S                A          L  +      ++  +   +
Sbjct: 186 STKGIKAFKLLSSSG---------------AYWRGDENKHMLTRIYGTAYATKDELKEHL 230

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
            ++ EE +K       R+++L
Sbjct: 231 TQL-EEAKKRDHNKLGREMKL 250


>gi|213389878|gb|ACJ46005.1| threonyl tRNA synthetase [Palm lethal yellowing phytoplasma]
          Length = 641

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 3/140 (2%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSI 635
              R    +NHS  HLL  A+  I    +   G  I  +G  +D+      I+   L  I
Sbjct: 63  KDQRSIEILNHSTAHLLAQAVKRIFPKSLLNIGPTI-KEGFYYDIDFLDYHISENSLIEI 121

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  ++ I  + +   +  +N ++A    +      +  + ++   V     G     LC 
Sbjct: 122 EKMMHLISKRKIRYYSYEINIKEAYELFSNNPYKIQLLEEIQESKVSVYFQGEFFD-LCR 180

Query: 696 GTHVSSTGEIMLLYIVSESS 715
           G H+ +T  I    ++  S 
Sbjct: 181 GIHLINTNIIQNFKLLKISG 200


>gi|46102544|gb|AAS80324.1| hypothetical protein [Xenorhabdus nematophila]
          Length = 290

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 81/252 (32%), Gaps = 39/252 (15%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITDVQK--KAEG 552
              +++         V+ D +PFY E    G Q  D G    +   L I         +G
Sbjct: 19  DAVVIDIFKYNDGYIVITDNSPFYPENYKWGDQKSDVGVIEFNNHILNIVKTYTAAVIDG 78

Query: 553 IFV------------------HHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATH 591
                                H+     G+        ++ L++D + R ++S  HS  H
Sbjct: 79  QIYIDQNIPDKLNAEDKLIPAHYLESLNGLEDKFILGENIKLSVDAETRHKISAAHSMAH 138

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED-NVNDIIAQNLPVV 650
            +  AL+     + ++     +      D       + +ELKSI+       I +     
Sbjct: 139 FMSLALNKAANKYWNKGYETDSLGNFNLDKAAIFKSSISELKSIDIYRFGKSIKKKGFDK 198

Query: 651 TRIM----NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCGGTH 698
           +  M    +  + I       L      +V   S   ED  +  S          CGGTH
Sbjct: 199 SSFMENIDSTSEEINLILKNWLSIGSEIQVEYTSKNIEDLRLWKSTVENKPVVIPCGGTH 258

Query: 699 VSSTGEIMLLYI 710
           + +  EI  + +
Sbjct: 259 IKNIEEIKDVKV 270


>gi|76664827|emb|CAJ17850.1| threonyl-tRNA synthetase [Candidatus Phytoplasma solani]
          Length = 302

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLP 648
            HL+  A+  +    +   G  I  +G  +D+   K  I+  +  +IE  +  I  +N P
Sbjct: 2   AHLMAQAIKRLYPQALLTIGPAI-KEGFYYDIDFQKHDISKNDFAAIEKMMKQISLENHP 60

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
           ++   ++ + A    A         ++ +   +     G     LC G H+  T  +   
Sbjct: 61  IIREEVSYQKAKEIFANNPYKIVLLEKHKEEVISIYHQGEFFD-LCRGGHLLKTSLMKHF 119

Query: 709 YIVSESS 715
            ++  S 
Sbjct: 120 KLLKISG 126


>gi|327402300|ref|YP_004343138.1| Ser-tRNA(Thr) hydrolase [Fluviicola taffensis DSM 16823]
 gi|327317808|gb|AEA42300.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Fluviicola
           taffensis DSM 16823]
          Length = 647

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 27/204 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           ++ HS+ HL+  AL           G  I            +P    +L+ IE  + ++ 
Sbjct: 70  TMWHSSAHLMAEALEFYYPGIKLAIGPPIANGYYYDVDFMDQPFKEEDLEKIEQKMKELA 129

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH------SSALCGGT 697
               P V + +++ DA+A         K +     +  +  DG +        + LC G 
Sbjct: 130 KLKNPYVRKEVSKADALAY-----FTEKEDPYKLELIQDLPDGSITFYTQGNFTDLCRGP 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
           H+    +   +  V   SI     R               ++++L  +       Q  + 
Sbjct: 185 HIP---DTGFIKAVKLMSIAGAYWR------------GDEKNKQLTRVYGITFPKQAELT 229

Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL 781
             +E + EE ++       ++L+L
Sbjct: 230 EYLERV-EEAKRRDHRKVGKELEL 252


>gi|156973385|ref|YP_001444292.1| hypothetical protein VIBHAR_01072 [Vibrio harveyi ATCC BAA-1116]
 gi|156524979|gb|ABU70065.1| hypothetical protein VIBHAR_01072 [Vibrio harveyi ATCC BAA-1116]
          Length = 292

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 92/268 (34%), Gaps = 66/268 (24%)

Query: 501 IVEEAVSGQKVEVVFDQ-TPFYAEA---GGQLGDTGCAIGDGIRLQITD----------- 545
            V+   S ++V  V  + TPF+  +        D G     GI  ++ D           
Sbjct: 23  PVQLVHSTEEVTYVLTEITPFHPVSHIWPDHPADKGTLTIKGISYEVADCQVGAVELASG 82

Query: 546 ---------VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594
                    V++  EG    V H +     ++   + +L +D + +  LS  HSA H+ +
Sbjct: 83  ELHVGTAIPVKRDTEGWAFVVVHVLSRTDAIKAGDTALLEVDKEYQLSLSRGHSAGHIAY 142

Query: 595 HALSTILGSHVS-------------------QNGSCITPDGLRFDVTHSKPITS------ 629
            AL+ +L  +                     Q  S +TPD         K +        
Sbjct: 143 LALNKVLAQNYWRKDADRKDPYGNYDFNSYAQETSFVTPDKCLDTYRLGKTLRKRGLNSA 202

Query: 630 ---AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
              ++LKSIE  VN ++          + R+ AI        G    D  R    +  +G
Sbjct: 203 DMLSDLKSIEQQVNVLLKD-------WLKRDMAITIDC---HGEHLTD-SRYWQCDLGEG 251

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSES 714
            + +   CGGTH S   +   + +    
Sbjct: 252 EI-AVIPCGGTHASHLSDFGSIQVTLVE 278


>gi|256070953|ref|XP_002571806.1| threonyl-tRNA synthetase [Schistosoma mansoni]
 gi|238656954|emb|CAZ28036.1| threonyl-tRNA synthetase, putative [Schistosoma mansoni]
          Length = 563

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 18/139 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT----SAELKSIEDNVNDI 642
           HS+ H+L  AL      H+         +G  +D+             +L  +E+  + I
Sbjct: 85  HSSAHVLGEALERCYSGHLCYGPPI--EEGFYYDMWVPNQQHSGLRPEDLSIVENVCHSI 142

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV--SVEYEDGGVHSS----ALCGG 696
             +N P     M +ED +   A          + R++   ++     V+       LC G
Sbjct: 143 CKENQPFERLEMKKEDLLKMFAYNEF------KCRIIHEKIDTPTTTVYRCGPLIDLCRG 196

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV  TG I  L +   SS
Sbjct: 197 PHVRHTGCIKALSVTKCSS 215


>gi|541616|gb|AAC46033.1| thioesterase [Pseudomonas syringae]
          Length = 453

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 14/141 (9%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGI 564
           A+S   ++VV   T F+AE   Q  D GC      R+++T  +           + E   
Sbjct: 267 ALSIDGLDVVITPTIFFAE-YRQESDKGCIN----RIEVTRPRLLTSA--SSIGLAEDPD 319

Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
                 + + ID+  R  L   H A   L  +        + + G+ I     R D +  
Sbjct: 320 FAVGDLVSVEIDWPRRYALMRLHFAALKLCWS----KFPDLEKIGAHIGQHKARIDFSLE 375

Query: 625 KPIT---SAELKSIEDNVNDI 642
             ++      L+ +E  V   
Sbjct: 376 GNVSQYFPEILQGVEHLVAAY 396


>gi|73981323|ref|XP_860781.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 5
           [Canis familiaris]
          Length = 636

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + +  S        F +   + +  +EL ++E    +++A  
Sbjct: 133 HSSTHVLGAAAEQLLGAVLCRGPSTECGFYHDFFLGKERTVRGSELPALEQICQELVAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P     ++++             +  +           G      LC G H+  TG+I 
Sbjct: 193 HPFRRLEVSQDQLRQLFKDNPFKLRLIEEKVTGPTATVYGCGMLVDLCRGPHLRHTGQIG 252

Query: 707 LLYIVSESSIRAG 719
            L +++    R G
Sbjct: 253 GLKLLTAEYTRRG 265


>gi|219520186|gb|AAI43944.1| TARSL2 protein [Homo sapiens]
          Length = 766

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 41/221 (18%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIF---VHHAIVERGILRTEMSLVLTID---YQ 578
            G+ GDT   I     +++ D Q     ++    +    E      E +++  ++   + 
Sbjct: 152 YGKKGDTSNII----TVRVADGQTVQGEVWKTTPYQVAAEISQELAESTVIAKVNGELWD 207

Query: 579 NRRQLS------------------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             R L                     HS+ H+L  A+    G H+         +G  +D
Sbjct: 208 LDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYD 265

Query: 621 -VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYND 674
                + ++S EL ++E+    II +  P     +++E  +               K N 
Sbjct: 266 MFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVNT 325

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 326 ATTTV---YRCGPLID--LCKGPHVRHTGKIKTIKIFKNSS 361


>gi|145511255|ref|XP_001441555.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408805|emb|CAK74158.1| unnamed protein product [Paramecium tetraurelia]
          Length = 937

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 23/174 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  AL  I G H+   G  I              +T  +   IE    D++A  
Sbjct: 162 HSSAHILGAALEEIYGCHLCI-GPAIEGGFFYDCYIGDIKVTQNDYVKIEKAAQDLVAAK 220

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-------GTHV 699
                 I+ +E+ +    +         + ++++ +  DG + ++  CG       G H+
Sbjct: 221 QEFQRAILTKEECLEIFGSNPF------KRQLITNKIPDGSLTTAYRCGNLIDLCTGPHL 274

Query: 700 SSTGEIMLLYIVSESS---IRAGI----RRIEAIT--GQRARSHLMGQDEKLKS 744
            +T  +    I   S+   +        +R+  IT   ++     +   ++L  
Sbjct: 275 PNTSYVKAFQITKNSAAYWLGKNTNDDLQRVYGITFPNKKLLDEYVKIQKELAQ 328


>gi|84387630|ref|ZP_00990647.1| hypothetical protein V12B01_09171 [Vibrio splendidus 12B01]
 gi|84377475|gb|EAP94341.1| hypothetical protein V12B01_09171 [Vibrio splendidus 12B01]
          Length = 306

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 85/259 (32%), Gaps = 66/259 (25%)

Query: 506 VSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD----------------- 545
               K  ++ D TPF+  +        D G    +G +  + D                 
Sbjct: 42  NDDSKTYLITDVTPFHPVSHIWPDHPADRGFVSLNGEQYIVEDCLVGAVEQSTGKLHIAA 101

Query: 546 ---VQKKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599
              V++ AEG   + VH       +++    ++L++D + +  LS  HSA H+   AL+ 
Sbjct: 102 DIPVKRDAEGWAFVVVHQLPGSASMIKVNDEVMLSVDKEYQASLSRGHSAGHIAFLALNK 161

Query: 600 ILGSHVSQN-------------------GSCITPDGLRFDVTHSKPITS---------AE 631
           +L     +                     S +TP+         K +             
Sbjct: 162 VLAESYWRKDADRKDPLGSYDFNSYAQVTSFVTPELCTDKYRLGKTLKKRGLNVADMLTN 221

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
           L  IE ++N +I   L   T +          A  L G    D          D     S
Sbjct: 222 LDGIEADINQMIKGWLADSTPV----------AMRLEGEALTDSRYWE--WQLDSDTLVS 269

Query: 692 ALCGGTHVSSTGEIMLLYI 710
             CGGTH+ +T E+  L +
Sbjct: 270 IPCGGTHIENTSELKSLSV 288


>gi|294155633|ref|YP_003560017.1| threonine--tRNA ligase [Mycoplasma crocodyli MP145]
 gi|291600202|gb|ADE19698.1| threonine--tRNA ligase [Mycoplasma crocodyli MP145]
          Length = 580

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            L +NH+ +HLL  A+  +  +     G  I  +G  +D   ++ ++  EL  IE  +  
Sbjct: 4   DLKLNHTTSHLLGAAVEKLYPNVKLGFGPAID-EGFYYDFEFTEALSDTELSKIEKQMKK 62

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKY----NDRVRVVSVEYEDGGVHSSALCGGT 697
             ++NL +     +  D         L  +      D      V+  +       LC G 
Sbjct: 63  FASRNLVMKKVDKSHYDFKNKPYKKELYDELIKAKKDVTFYALVDPLNNEEIFVDLCAGN 122

Query: 698 HVSSTGEIMLLYIVSESS 715
           H+  T +I    +++ S 
Sbjct: 123 HIEDTKKIKNFKLLNLSG 140


>gi|150024985|ref|YP_001295811.1| threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
 gi|166223340|sp|A6GY22|SYT_FLAPJ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|149771526|emb|CAL42995.1| Threonine--tRNA ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 648

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 95/263 (36%), Gaps = 31/263 (11%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I +G+   +          F +  +     L T+ SLVL        +
Sbjct: 15  ENGVTPMDVAKSISEGLARNVIS------AAFNNITVEISTELTTDGSLVLYTWNDKDGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
            +  HS +H++   L  +        G  I  +G  +DV      I  A+ K IE  + +
Sbjct: 69  KAFWHSTSHVMAQVLEEMYPGLKLTLGPAID-NGFYYDVDFGDTKIVEADFKKIESRILE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           I  +      R + + DA+          +    +   ++ + D    +  LC G H+ +
Sbjct: 128 ISKEKHEFKLRPVTKADALELYKDNEYKFELISNLEDGTITFCDHATFTD-LCRGGHIPN 186

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNVVG 758
           TG I  + I+S   I     R                DEK K L      S   Q ++  
Sbjct: 187 TGIIKAVKIMS---IAGAYWR---------------GDEKNKQLTRVYGTSFPKQKDLTD 228

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL 781
            +E + EE ++       ++L+L
Sbjct: 229 YLE-LLEEAKRRDHRKLGKELEL 250


>gi|71984184|ref|NP_001022033.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|1711653|sp|P52709|SYTC_CAEEL RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|3875006|emb|CAA93762.1| C. elegans protein C47D12.6a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 725

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 70/196 (35%), Gaps = 34/196 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+         +G  +D+ H ++ I   +   I+  V   +  
Sbjct: 154 HSSAHVLGEAMERYCGGHLCYGPPI--QEGFYYDMWHENRTICPDDFPKIDQIVKAAVKD 211

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
                   M +ED +              R+    +      V+       LC G HV  
Sbjct: 212 KQKFERLEMTKEDLLEMFKYNEFKV----RIITEKIHTPKTTVYRCGPLIDLCRGPHVRH 267

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG++  + I   SS                 S+  G+ +  +SL     +S  +      
Sbjct: 268 TGKVKAMAITKNSS-----------------SYWEGKADA-ESLQRLYGISFPD-----S 304

Query: 762 EIWEEYRKLQLIHAKR 777
           +  +E++KLQ   AKR
Sbjct: 305 KQLKEWQKLQEEAAKR 320


>gi|302541133|ref|ZP_07293475.1| threonine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302458751|gb|EFL21844.1| threonine-tRNA ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 659

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 73/248 (29%), Gaps = 61/248 (24%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554
           +V  G    +  +G +  V        A  GGQL D      DG  ++            
Sbjct: 18  VVTTGTTAADLFAGDRSIVA-------ARVGGQLKDLAYEPADGEEIE------------ 58

Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614
                        E++    +D          HS  H++  A+  +        G  I  
Sbjct: 59  -----------PVEITSQDGLDILR-------HSTAHVMAQAVQELFPEAKLGIGPPI-K 99

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP-----VVTRIMNREDAIASGAAALLG 669
           DG  +D     P    +LK IE  + +I  +        V       E A       L+G
Sbjct: 100 DGFYYDFDVETPFQPEDLKRIEKKMQEIQKRGQKFSRRAVTDEAAREELAAEPYKLELIG 159

Query: 670 TKY---------------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
            K                 +     +++ + G +    LC G H+ +T  I    ++   
Sbjct: 160 LKGSAADAAEGASAEVGAGELTIYDNLDAKSGDLCWKDLCRGPHLPTTRNIPAFKLM--- 216

Query: 715 SIRAGIRR 722
              A   R
Sbjct: 217 RSAAAYWR 224


>gi|300724835|ref|YP_003714160.1| hypothetical protein XNC1_4047 [Xenorhabdus nematophila ATCC 19061]
 gi|297631377|emb|CBJ92072.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 279

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 81/252 (32%), Gaps = 39/252 (15%)

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITDVQK--KAEG 552
              +++         V+ D +PFY E    G Q  D G    +   L I         +G
Sbjct: 8   DAVVIDIFKYNDGYIVITDNSPFYPENYKWGDQKSDVGVIEFNNHILNIVKTYTAAVIDG 67

Query: 553 IFV------------------HHAIVERGI---LRTEMSLVLTIDYQNRRQLSINHSATH 591
                                H+     G+        ++ L++D + R ++S  HS  H
Sbjct: 68  QIYIDQNIPDKLNAEDKLIPAHYLESLNGLEDKFILGENIKLSVDAETRHKISAAHSMAH 127

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED-NVNDIIAQNLPVV 650
            +  AL+     + ++     +      D       + +ELKSI+       I +     
Sbjct: 128 FMSLALNKAANKYWNKGYETDSLGNFNLDKAAIFKSSISELKSIDIYRFGKSIKKKGFDK 187

Query: 651 TRIM----NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA--------LCGGTH 698
           +  M    +  + I       L      +V   S   ED  +  S          CGGTH
Sbjct: 188 SSFMENIDSTSEEINLILKNWLSIGSEIQVEYTSKNIEDLRLWKSTVENKPVVIPCGGTH 247

Query: 699 VSSTGEIMLLYI 710
           + +  EI  + +
Sbjct: 248 IKNIEEIKDVKV 259


>gi|225551832|ref|ZP_03772775.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
 gi|225371627|gb|EEH01054.1| threonyl-tRNA synthetase [Borrelia sp. SV1]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|226321417|ref|ZP_03796944.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
 gi|226233213|gb|EEH31965.1| threonyl-tRNA synthetase [Borrelia burgdorferi Bol26]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|99035129|ref|ZP_01314912.1| hypothetical protein Wendoof_01000242 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 536

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           DG  +D    +  T+ +L +IE  + +I+  N   V  +  R+ ++     + +G KY  
Sbjct: 1   DGFYYDFATDRTFTTDDLTAIEKKMKEIVKSNHRFVREVWTRKQSVDFF--SGIGEKYKV 58

Query: 675 RVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
            +     E E+  V+       LC G H  STG +    ++    +     R
Sbjct: 59  DIISSIPEGENLTVYRQGDFVDLCRGPHSPSTGRVKAFKLMK---VAGAYWR 107


>gi|294508832|ref|YP_003572891.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
 gi|294345161|emb|CBH25939.1| threonyl-tRNA synthetase, class IIa [Salinibacter ruber M8]
          Length = 656

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631
           +LT D +  +Q +  HS+ HL+  AL T+        G  I            + +++ E
Sbjct: 66  ILTWDDEEGKQ-TFWHSSAHLMAEALQTLYPDVKFTIGPPIDQGFYYDVDLGDQTLSADE 124

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDG 686
           L++IE+ + ++  ++       +++ DAI    A   G +Y   +     E     YE G
Sbjct: 125 LEAIEEKMLELARRDAAYERHEVSKADAIEHYEA--EGNEYKLELIEGLEEGEISFYEQG 182

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                 LC G H+ STG+I    ++S   +     R
Sbjct: 183 EFTD--LCRGPHIPSTGDIKAPKLLS---VAGAYWR 213


>gi|224532379|ref|ZP_03673009.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
 gi|224512686|gb|EEF83057.1| threonine--tRNA ligase [Borrelia burgdorferi WI91-23]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|15595065|ref|NP_212854.1| threonyl-tRNA synthetase [Borrelia burgdorferi B31]
 gi|218249246|ref|YP_002375218.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223889476|ref|ZP_03624062.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|8928363|sp|O51662|SYT_BORBU RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|226701542|sp|B7J0G5|SYT_BORBZ RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2688663|gb|AAC67076.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi B31]
 gi|218164434|gb|ACK74495.1| threonyl-tRNA synthetase [Borrelia burgdorferi ZS7]
 gi|223885162|gb|EEF56266.1| threonyl-tRNA synthetase [Borrelia burgdorferi 64b]
 gi|312147875|gb|ADQ30534.1| threonyl-tRNA synthetase [Borrelia burgdorferi JD1]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|300173545|ref|YP_003772711.1| threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887924|emb|CBL91892.1| Threonyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811]
          Length = 655

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIEDNVND 641
           + H+ +HLL  AL  +        G     D   +  T +     ++  +   IE  ++ 
Sbjct: 73  LRHATSHLLAQALKRMPKFANMHFGVGPFIDNGFYYDTDNGAGNQVSVEDFPEIEAMMHK 132

Query: 642 IIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           I+ ++LP+++R + R +A+   AA     AL+     D +  ++++ +   +    L   
Sbjct: 133 IVKEDLPIISRQITRAEALEMFAADPYKLALITDLPEDEILTIAIQGDHIELDKGGL--- 189

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
             V STG I    + S   +     R
Sbjct: 190 --VPSTGWIKHFKLTS---VAGAYWR 210


>gi|72080917|ref|YP_287975.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
 gi|71914041|gb|AAZ53952.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448]
          Length = 579

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
              +NHS++HLL  A+  +    V      +  DG  +D   S  I+ ++   IE  +  
Sbjct: 6   DYKLNHSSSHLLALAIKILYPG-VKFGIGPVFDDGFYYDFDFSVSISQSDFPKIEKLMKK 64

Query: 642 IIAQNLP-VVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           ++++NL  V T   N +    +  A L     K  +++   S+      +    LC G H
Sbjct: 65  LVSKNLKIVETDGKNLDFQNQTYKAELKSDLEKKGEKITYFSIVDSKNNILFEDLCYGNH 124

Query: 699 VSSTGEIMLLYIVS 712
           + S G+I    ++ 
Sbjct: 125 LESLGKIQNFKLLK 138


>gi|291320287|ref|YP_003515549.1| threonyl tRNA synthetase [Mycoplasma agalactiae]
 gi|290752620|emb|CBH40593.1| Threonyl tRNA synthetase [Mycoplasma agalactiae]
          Length = 582

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 8/142 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           +NH+ +HLL  A+  +   +V       T +G  +D   ++ ++  EL  IE  +  + +
Sbjct: 9   LNHTTSHLLGAAVQILYP-NVKLGFGPATDEGFYYDFDFAEALSENELGKIEKLMKKLAS 67

Query: 645 QNL-PVVTRIMNREDAIASGAAALLGT---KYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
           +NL  +       + A       L      +  +       +  +  +    LC G H+ 
Sbjct: 68  RNLVTIKISEDEYDFANKPYKKELYDELKSQGKEITFYALQDPLNKEIVFKDLCAGNHIE 127

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           ST  I    ++S   I     R
Sbjct: 128 STKNIKNFKLLS---IAGAYWR 146


>gi|225548931|ref|ZP_03769908.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
 gi|225370534|gb|EEG99970.1| threonyl-tRNA synthetase [Borrelia burgdorferi 94a]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|221217966|ref|ZP_03589433.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224533347|ref|ZP_03673941.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225549973|ref|ZP_03770934.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
 gi|221192272|gb|EEE18492.1| threonyl-tRNA synthetase [Borrelia burgdorferi 72a]
 gi|224513512|gb|EEF83869.1| threonyl-tRNA synthetase [Borrelia burgdorferi CA-11.2a]
 gi|225369432|gb|EEG98884.1| threonyl-tRNA synthetase [Borrelia burgdorferi 118a]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|216264494|ref|ZP_03436486.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
 gi|215980967|gb|EEC21774.1| threonyl-tRNA synthetase [Borrelia burgdorferi 156a]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|195941538|ref|ZP_03086920.1| threonyl-tRNA synthetase (thrZ) [Borrelia burgdorferi 80a]
 gi|312149456|gb|ADQ29527.1| threonyl-tRNA synthetase [Borrelia burgdorferi N40]
          Length = 581

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|291404015|ref|XP_002718268.1| PREDICTED: threonyl-tRNA synthetase-like 2-like [Oryctolagus
           cuniculus]
          Length = 709

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G H+         +G  +D     + ++S EL ++E+    II
Sbjct: 139 YWHSSAHVLGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRAVSSTELPALENMCKAII 196

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  P     +++E  +               K +     V             LC G H
Sbjct: 197 KERQPFERLEVSKEVLLEMFKYNKFKCRILNEKVDTPTTTVYRCGP-----LVDLCKGPH 251

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  + I   SS
Sbjct: 252 VRHTGKIKAIKIFKNSS 268


>gi|124010058|ref|ZP_01694720.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
 gi|123983945|gb|EAY24340.1| threonyl-tRNA synthetase [Microscilla marina ATCC 23134]
          Length = 578

 Score = 55.9 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 32/267 (11%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y  AG    +   +I +G+   +   +   E             +  + ++ L       
Sbjct: 16  YP-AGTTGHEVALSISEGLARNVLTAKVNGE------VWESSRPIHEDATVSLLTWKDED 68

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT--HSKPITSAELKSIEDN 638
            + +  HS+ HLL  A+  +        G  I   G  +D+       I       IE  
Sbjct: 69  GKQAFWHSSAHLLAEAVEALYPGTKFGIGPSIESGGFYYDIDTGDDVVINEEAFPKIEAK 128

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN----DRVRVVSVEYEDGGVHSSALC 694
           + ++  Q      + +++ +AI        G +Y     DR+   ++ +   G  +  LC
Sbjct: 129 MLELAKQKNEFARKEVSKAEAIEYFTEK--GDEYKLELIDRLEDGTITFYTQGNFTD-LC 185

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
            G H+ S     L+     +++              A        ++L  +       Q 
Sbjct: 186 RGGHIPS---TGLIKAAKLTNVAG------------AYWLGQTDRKQLTRIYGITFPKQK 230

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL 781
            +   +  + EE +K       ++L+L
Sbjct: 231 ELKEHL-ALLEEAKKRDHRKLGKELEL 256


>gi|326336128|ref|ZP_08202300.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691637|gb|EGD33604.1| threonine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 649

 Score = 55.9 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDI 642
           +  HS+ H+L  AL  +  +     G  I  +G  +DV  +   IT  +  +IE  + +I
Sbjct: 70  AFWHSSAHILAQALEELFPNIKLTIGPAI-ANGFYYDVDFNGNTITDKDFPAIEAKMLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAA-LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                    R +++ +A++         T+  + +   ++ + D    +  LC G H+ +
Sbjct: 129 ARGKYEFKMRPVSKAEALSYYKGKNEYKTELIEALEDGTITFCDHSTFTD-LCRGGHIPN 187

Query: 702 TGEIMLLYIVSESSIRAGIRR 722
           TG +  + I+S   I     R
Sbjct: 188 TGFVKAVKILS---IAGAYWR 205


>gi|289642063|ref|ZP_06474216.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
 gi|289508136|gb|EFD29082.1| threonyl-tRNA synthetase [Frankia symbiont of Datisca glomerata]
          Length = 610

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 36/212 (16%)

Query: 576 DYQNRRQL--SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           D + R     +  HS  HLL HA+           G   T DG  +D    +P+T  +L 
Sbjct: 8   DAEYRASTLYAKRHSVAHLLAHAVLEKFPDAKLGVGPP-TRDGFYYDFALPRPLTPEDLA 66

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL-----------GTKYNDRVRVVSVE 682
            +++ V  +I   +      +  ++A+   A   L           G   N       VE
Sbjct: 67  GLQERVRALIRDGVRFERHELTTDEAVTRFADQPLKLELIRDIVAGGVDDNGEPIEGPVE 126

Query: 683 ---YEDGGVHSSALCGGTHV--SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
              YE G      LC G H+  SS      + ++  S                A      
Sbjct: 127 LSVYESGDFED--LCRGPHIEDSSAIHPDAVALLRVSG---------------AYWRGDE 169

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + ++L+ +   +  S   +   + ++ E  ++
Sbjct: 170 KRQQLQRIYGTVMDSPKELRHYLWQLEEAKKR 201


>gi|71893938|ref|YP_279384.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
 gi|71852065|gb|AAZ44673.1| threonyl-tRNA synthetase [Mycoplasma hyopneumoniae J]
          Length = 579

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
              +NHS++HLL  A+  +    V      +  DG  +D   S  I+ ++   IE  +  
Sbjct: 6   DYKLNHSSSHLLALAIKILYPG-VKFGIGPVFDDGFYYDFDLSVSISQSDFPKIEKLMKK 64

Query: 642 IIAQNLP-VVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           ++++NL  V T   N +       A L     K  +++   S+      +    LC G H
Sbjct: 65  LVSKNLKIVETDGKNLDFQNQIYKAELKNDLEKKGEKITYFSIVDSKNNILFEDLCYGNH 124

Query: 699 VSSTGEIMLLYIVS 712
           + S G+I    ++ 
Sbjct: 125 LESLGKIQNFKLLK 138


>gi|324505892|gb|ADY42525.1| Threonyl-tRNA synthetase [Ascaris suum]
          Length = 706

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 19/173 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A     G+H+         +G  +D     + I+  +   +E+ V   +  
Sbjct: 135 HSSAHVLGEAAERYCGAHLCYGPPL--TEGFYYDMFKEGEAISPDDFPKLEEIVKCAVKD 192

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
             P     ++++D +              R+    V      V+       LC G HV  
Sbjct: 193 RQPFERLEVSKDDLLEMFKYNKFKL----RIINEKVHTPTATVYRCGPLIDLCRGPHVRH 248

Query: 702 TGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           TG+I  + I   SS           + RI  I+   +   L       +  A 
Sbjct: 249 TGKIKAMAITKTSSSYWEGRADAESLTRIYGISFPDS-KQLKEWQRLQEEAAK 300


>gi|325287305|ref|YP_004263095.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
 gi|324322759|gb|ADY30224.1| threonyl-tRNA synthetase [Cellulophaga lytica DSM 7489]
          Length = 647

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 75/206 (36%), Gaps = 23/206 (11%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           G    D   +I +G    +   +      F    +     L  + SLVL        + +
Sbjct: 17  GSTPMDVAKSISEGFARNVISAK------FNDTTVETVTPLTEDGSLVLYTWKDTEGKQA 70

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDI 642
             HS++H++  A+  +        G  I  +G  +DV   +   I+  +   IE    +I
Sbjct: 71  FWHSSSHIVAQAIEELYPGVKLTIGPSI-ENGFYYDVDLGEGRSISDKDFPKIEKKAIEI 129

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGG 696
                    R + +++A+     AL   + N+    +    EDG +          LC G
Sbjct: 130 ARGKHDFKIRSVTKDEAL-----ALYKEQGNEYKTELIENLEDGTITFCDHDTFTDLCRG 184

Query: 697 THVSSTGEIMLLYIVSESSIRAGIRR 722
            H+ +TG +  + I+S   +     R
Sbjct: 185 GHIPNTGIVKAIKILS---VAGAYWR 207


>gi|221109010|ref|XP_002168836.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 384

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 25/202 (12%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS +H++  AL  +        G  I  +G  +DV      IT A+ K IED V +I
Sbjct: 70  AFWHSTSHVMAQALEEMYSGIKLTLGPAID-NGFYYDVDFGDNKITDADFKKIEDRVLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +      R +++ +A+         T+    +   ++ + D       LC G H+ +T
Sbjct: 129 SREKHEFKMRSVSKAEALEVYKNNEYKTELISNLEDGTITFCDHANFFD-LCRGGHIPNT 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNVVGR 759
           G I  + I+S   I     R                DEK K L      S   Q ++   
Sbjct: 188 GIIKAVKIMS---IAGAYWR---------------GDEKNKQLTRVYGTSFPKQKDLTDY 229

Query: 760 VEEIWEEYRKLQLIHAKRKLQL 781
           +E + EE ++       ++L L
Sbjct: 230 LE-LLEEAKRRDHRKLGKELDL 250


>gi|167389590|ref|XP_001739012.1| threonyl-tRNA synthetase, cytoplasmic [Entamoeba dispar SAW760]
 gi|165897485|gb|EDR24628.1| threonyl-tRNA synthetase, cytoplasmic, putative [Entamoeba dispar
           SAW760]
          Length = 676

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 12/168 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ HLL  A+ T    ++   G     D   +D   +  I++ + K ++  +   + ++
Sbjct: 115 HSSAHLLGEAMETQYKCYL-HTGPATAID-FFYDCKMNGAISATDFKKLQSLIEGYVREH 172

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                  + +E+A+   A      K  +++   S            LC G H+++   I 
Sbjct: 173 QVFTRIEITKEEALKMFAYNPYKVKIIEKLPEGSTITAYKNGSFVDLCRGPHLANAASIK 232

Query: 707 LLYIVSESSI-------RAGIRRIEAI---TGQRARSHLMGQDEKLKS 744
            + I+S  S+          ++R+ A+   T    + ++   +E  K 
Sbjct: 233 AIKILSSGSVHLDGTATGDLLQRVHAVSFPTKDLLKEYIKRAEEADKR 280


>gi|157165430|ref|YP_001465955.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
 gi|171855003|sp|A7ZAZ7|SYT_CAMC1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|112801821|gb|EAT99165.1| threonyl-tRNA synthetase [Campylobacter concisus 13826]
          Length = 606

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 21/197 (10%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV---THSKPITSAEL 632
           D        I HS  HL+  A+ ++        G  +  DG  +D         +  ++L
Sbjct: 32  DNSKEALHVIRHSCAHLMAQAIKSLYPKAKFFVGPNV-EDGFYYDFRVDDEGTKLGESDL 90

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
            +IED + ++  +   +V     + +         L  +   R+    V     G     
Sbjct: 91  AAIEDKMKELAEKKFDIVKTCSTKANMSEKFKNDDLKQEVLKRIPDGEVSSYAQGDF-ED 149

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
           LC G H+ +T  +    +               + G  A        E L  +       
Sbjct: 150 LCRGPHLPNTKFLKFFKLTR-------------VAG--AYLGGDESREMLTRIYGTAYAD 194

Query: 753 QGNVVGRVEEIWEEYRK 769
           + ++   +  I EE +K
Sbjct: 195 KESLKEHI-RIIEEAKK 210


>gi|34540737|ref|NP_905216.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
 gi|73919814|sp|Q7MVQ5|SYT_PORGI RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|34397051|gb|AAQ66115.1| threonyl-tRNA synthetase [Porphyromonas gingivalis W83]
          Length = 653

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  HS+ HL+  AL  +        G  I  +G  +DV   +   I  A+L +IE  + 
Sbjct: 69  HAFWHSSAHLMAEALEELYPGIKFGIGPAI-ENGFYYDVDPGEGISIKDADLPAIEKRMQ 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-------AL 693
           D+ A+   ++ R + + DA+      + G K +D+ +V  +     G  ++        L
Sbjct: 128 DLAARKETIIRRDIAKADAL-----RMFGDK-DDQYKVELISELADGTITTYTQGGFTDL 181

Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           C G H+ +TG I  + ++S   +     R
Sbjct: 182 CRGPHLPNTGYIKAIKLLS---VAGAYWR 207


>gi|260663835|ref|ZP_05864720.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260551596|gb|EEX24783.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 225

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 718 AGIRRIEAI-TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            G + + AI TG  A + L    ++LK +A+ L      VV    ++  + + L     K
Sbjct: 61  GGTKVLIAIATGLAAMARLKAAHQQLKEVATALSTPPEEVVAAASDLLAKNKAL-----K 115

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEV 804
           ++L+   + L   + A V      ++EV
Sbjct: 116 KQLKAATKALMAQQAAQVLASGQQVNEV 143


>gi|184154620|ref|YP_001842960.1| hypothetical protein LAF_0144 [Lactobacillus fermentum IFO 3956]
 gi|183225964|dbj|BAG26480.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 225

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 718 AGIRRIEAI-TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            G + + AI TG  A + L    ++LK +A+ L      VV    ++  + + L     K
Sbjct: 61  GGTKVLIAIATGLAAMARLKAAHQQLKEVATALSTPPEEVVAAASDLLAKNKAL-----K 115

Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEV 804
           ++L+   + L   + A V      ++EV
Sbjct: 116 KQLKAATKALMAQQAAQVLASGQQVNEV 143


>gi|71984192|ref|NP_001022034.1| Threonyl tRNA Synthetase family member (trs-1) [Caenorhabditis
           elegans]
 gi|30145813|emb|CAD89723.1| C. elegans protein C47D12.6b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 684

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 70/196 (35%), Gaps = 34/196 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+         +G  +D+ H ++ I   +   I+  V   +  
Sbjct: 113 HSSAHVLGEAMERYCGGHLCYGPPI--QEGFYYDMWHENRTICPDDFPKIDQIVKAAVKD 170

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
                   M +ED +              R+    +      V+       LC G HV  
Sbjct: 171 KQKFERLEMTKEDLLEMFKYNEFKV----RIITEKIHTPKTTVYRCGPLIDLCRGPHVRH 226

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           TG++  + I   SS                 S+  G+ +  +SL     +S  +      
Sbjct: 227 TGKVKAMAITKNSS-----------------SYWEGKADA-ESLQRLYGISFPD-----S 263

Query: 762 EIWEEYRKLQLIHAKR 777
           +  +E++KLQ   AKR
Sbjct: 264 KQLKEWQKLQEEAAKR 279


>gi|38570111|ref|NP_689547.2| probable threonyl-tRNA synthetase 2, cytoplasmic [Homo sapiens]
 gi|189083596|sp|A2RTX5|SYTC2_HUMAN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|119622721|gb|EAX02316.1| threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|124376838|gb|AAI32672.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
 gi|187953219|gb|AAI36316.1| Threonyl-tRNA synthetase-like 2 [Homo sapiens]
          Length = 802

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 41/221 (18%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIF---VHHAIVERGILRTEMSLVLTID---YQ 578
            G+ GDT   I     +++ D Q     ++    +    E      E +++  ++   + 
Sbjct: 152 YGKKGDTSNII----TVRVADGQTVQGEVWKTTPYQVAAEISQELAESTVIAKVNGELWD 207

Query: 579 NRRQLS------------------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             R L                     HS+ H+L  A+    G H+         +G  +D
Sbjct: 208 LDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYD 265

Query: 621 -VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYND 674
                + ++S EL ++E+    II +  P     +++E  +               K N 
Sbjct: 266 MFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVNT 325

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 326 ATTTV---YRCGPLID--LCKGPHVRHTGKIKTIKIFKNSS 361


>gi|295135444|ref|YP_003586120.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
 gi|294983459|gb|ADF53924.1| threonyl-tRNA synthetase [Zunongwangia profunda SM-A87]
          Length = 648

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 71/203 (34%), Gaps = 14/203 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G+   +   +           +     L T+ +L L     +  +
Sbjct: 15  EQGSTPMDVAQSISAGLARNVISAKYN------DTIVETSTPLTTDGNLTLYTWNDDEGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  HS +H++  A+  +        G  I  +G  +DV   +   S  +   IE+ + +
Sbjct: 69  KAFWHSTSHVMAQAIQDLYPGAKLTIGPAI-ENGFYYDVDFGEQKISESDFSKIENRMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           I         R + +++A+            +  + +   ++ + D    +  LC G H+
Sbjct: 128 IARGKHDFKMREVTKKEALDYYKKINNPFKVELIENLEDGTITFCDHDTFTD-LCRGGHI 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +     ++  V   ++     R
Sbjct: 187 PN---TGIIKAVKLMNVAGAYWR 206


>gi|228469293|ref|ZP_04054319.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228309192|gb|EEK17794.1| threonyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 650

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            +  H++ HL+  AL  +        G  I         T  + I S +L  IE  + ++
Sbjct: 72  HAFWHTSAHLMAEALQELYPGVQFGIGPAIEAGFYYDIDTGDQVIKSEDLPKIEAKMLEL 131

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCG 695
             +   +  + +++ DA+          K     ++  +   + G  +       + LC 
Sbjct: 132 ARRKETLERKAISKSDALD------FFKKTGQTYKLELINDLEDGTITTYTQGAFTDLCR 185

Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
           G H+ ST  I  + ++S   +     R     G   R  L                 +  
Sbjct: 186 GPHLPSTAPIKAVKLLS---VAGAYWR-----GDETRRQLTRIYGI--------TFPKKK 229

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
           ++     + EE +K       ++L+L
Sbjct: 230 LLDEYLALLEEAKKRDHRKIGKELEL 255


>gi|326773248|ref|ZP_08232531.1| threonine--tRNA ligase [Actinomyces viscosus C505]
 gi|326636478|gb|EGE37381.1| threonine--tRNA ligase [Actinomyces viscosus C505]
          Length = 683

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 65/187 (34%), Gaps = 26/187 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  +        G  IT DG  +D      +T   L+ IE  +  I+ 
Sbjct: 73  LRHSATHVMAQAVQEMFPDVNLGIGPFIT-DGFYYDFGAIDAVTPEMLREIEKRMKRIVK 131

Query: 645 QNLPVVTRIMNRED-----AIASGAAALLGTKY-NDRVRVVSVEY----------EDGGV 688
           +    V R +   +     A       L+ TK        V V             DG V
Sbjct: 132 EGQRFVRRDITEAEGREELADQPYKLELITTKGAGAEGASVEVGAGGLTMYDNVRRDGTV 191

Query: 689 HSSALCGGTHVSSTGEIM-LLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDE 740
             + LC G H+ ST  I     +   SS           ++RI   T   ++  L     
Sbjct: 192 AWTDLCRGPHLPSTRLIGQGFALTKSSSAYWKGDQSGDSLQRIYG-TAWASKDDLKAYQT 250

Query: 741 KLKSLAS 747
           +L   A 
Sbjct: 251 RLAEAAK 257


>gi|73981325|ref|XP_850160.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 2
           [Canis familiaris]
          Length = 721

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + +  S        F +   + +  +EL ++E    +++A  
Sbjct: 136 HSSTHVLGAAAEQLLGAVLCRGPSTECGFYHDFFLGKERTVRGSELPALEQICQELVAAA 195

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P     ++++             +  +           G      LC G H+  TG+I 
Sbjct: 196 HPFRRLEVSQDQLRQLFKDNPFKLRLIEEKVTGPTATVYGCGMLVDLCRGPHLRHTGQIG 255

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 256 GLKLLTNSS 264


>gi|73981327|ref|XP_860843.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 6
           [Canis familiaris]
          Length = 701

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + +  S        F +   + +  +EL ++E    +++A  
Sbjct: 133 HSSTHVLGAAAEQLLGAVLCRGPSTECGFYHDFFLGKERTVRGSELPALEQICQELVAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P     ++++             +  +           G      LC G H+  TG+I 
Sbjct: 193 HPFRRLEVSQDQLRQLFKDNPFKLRLIEEKVTGPTATVYGCGMLVDLCRGPHLRHTGQIG 252

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 253 GLKLLTNSS 261


>gi|73981321|ref|XP_860741.1| PREDICTED: similar to threonyl-tRNA synthetase-like 1 isoform 4
           [Canis familiaris]
          Length = 695

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + +  S        F +   + +  +EL ++E    +++A  
Sbjct: 136 HSSTHVLGAAAEQLLGAVLCRGPSTECGFYHDFFLGKERTVRGSELPALEQICQELVAAA 195

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P     ++++             +  +           G      LC G H+  TG+I 
Sbjct: 196 HPFRRLEVSQDQLRQLFKDNPFKLRLIEEKVTGPTATVYGCGMLVDLCRGPHLRHTGQIG 255

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 256 GLKLLTNSS 264


>gi|149910916|ref|ZP_01899547.1| hypothetical metal-dependent hydrolase [Moritella sp. PE36]
 gi|149805983|gb|EDM65967.1| hypothetical metal-dependent hydrolase [Moritella sp. PE36]
          Length = 294

 Score = 55.5 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 82/252 (32%), Gaps = 65/252 (25%)

Query: 512 EVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQK 548
            V+ DQTPF+  +        D G  + +G +  +TD                    V++
Sbjct: 38  YVIVDQTPFHPVSHIWPDHPADKGFLVFEGKQYTVTDCVTGAFDVKNNKLYKGRDIPVKR 97

Query: 549 KAEGIF--VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             EG    V H +    +L    ++ L +D   +  LS  HSA HL  +AL+ +L     
Sbjct: 98  GEEGWHFVVVHELASDLVLNVSDTVELNVDEGYQAALSRGHSAGHLASYALNKVLEQTYW 157

Query: 607 QNG-------------------SCITPDGLRFDVTHSKPITS---------AELKSIEDN 638
           +                     S ++ +         K +           A+L  IE  
Sbjct: 158 RKDASRKDVLNNRDFHSYAQVLSLVSENKSTDSYRLGKTLKKRGLNVAEMLADLALIETK 217

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           VND++A  L     ++              G    D            G   +  CGG+H
Sbjct: 218 VNDVLAIWLETKAPVV----------MKCEGDALTDSRYWCC--DLGFGESITMPCGGSH 265

Query: 699 VSSTGEIMLLYI 710
           V S  E   + I
Sbjct: 266 VRSLAEYKGIQI 277


>gi|316965047|gb|EFV49888.1| threonyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 714

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  H+L  A   + G  +         +G  +D     + +T+ ++  +E  +   I  
Sbjct: 128 HSTAHVLGEAAERLFGCCLCYGPPI--ENGFYYDMFMDDRTVTAEDMDKLEKIMKAAIDG 185

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     + +E+ +          +  +                  LC G HV  TG +
Sbjct: 186 KQPFERLELKKEELMEMFKYNPFKLRILENKVKTPTTTAYRCGPLIDLCRGPHVRHTGLL 245

Query: 706 MLLYIVSESS 715
               I   SS
Sbjct: 246 NSFKITKNSS 255


>gi|25028341|ref|NP_738395.1| threonyl-tRNA synthetase [Corynebacterium efficiens YS-314]
 gi|23493626|dbj|BAC18595.1| putative threonyl-tRNA synthetase [Corynebacterium efficiens
           YS-314]
          Length = 720

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 45/198 (22%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  +G  +D   ++P T  +LK+IE  +  II 
Sbjct: 110 IRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDVAEPFTPEDLKTIEKRMKKIIK 168

Query: 645 QNLPVVTRIM----------------------------NREDAIASGAAALLGTKYNDRV 676
                  R+                             + ++A   GA         +  
Sbjct: 169 TGQKFERRVYESTEAAAAELADEPYKLELIQDKGNVDPDSDEATEVGA--------GELT 220

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQ 729
              +V      V  S LC G H+ +T  I    +   S+         AG++RI   T  
Sbjct: 221 AYDNVNPRTNEVEWSDLCRGPHIPTTRYIPAFALTRSSAAYWRGDQTNAGLQRIYG-TAW 279

Query: 730 RARSHLMGQDEKLKSLAS 747
            ++  L      L     
Sbjct: 280 ESKEKLDEYQTMLAEAEK 297


>gi|297297312|ref|XP_001086926.2| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Macaca mulatta]
          Length = 708

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 31/216 (14%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIF---VHHAIVERGILRTEMSLVLTID---YQ 578
            G+ GDT   I     +++TD Q     ++    +    E      E +++  ++   + 
Sbjct: 84  YGKKGDTNNII----TVRVTDGQTVQGEVWKTTPYQVAAEISQELAESTVIAKVNGELWD 139

Query: 579 NRRQLS------------------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             R L                     HS+ H+L  A+    G H+         +G  +D
Sbjct: 140 LDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYD 197

Query: 621 -VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
                + ++S EL ++E+    II +  P     +++E  +          +  +     
Sbjct: 198 MFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVDT 257

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           +            LC G HV  TG+I  + I   SS
Sbjct: 258 ATTTVYRCGPLIDLCKGPHVRHTGKIKTIKIFKNSS 293


>gi|294941858|ref|XP_002783275.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895690|gb|EER15071.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 908

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
           A A  L   +   +K++ + +E+  A       ++      KE RK   +  P+D+  G+
Sbjct: 32  ATAPYLKETTELFDKLYAAQEERLAALPKDPITIVLPDGTQKEGRK--FETTPLDIAIGI 89

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           S  +   V   +I+         +VV       ++ G   GD G    D     +  V+ 
Sbjct: 90  SKGLANSVVAAKILYTEPVDSMDQVVAADDE--SDVGSDAGDEG--SDDEEEAHVNTVKA 145

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             +      +    G  + E   +L  D    +  +  HS+ H+L  A+    G +++  
Sbjct: 146 WQKETVWDLSRPLEGSCKLE---LLKFDSPEGKD-TFWHSSAHILGEAMEQEYGCYLTIG 201

Query: 609 GSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
                 +G  +D    +  +   + + IE  ++ I+  +      ++ +E+A+   A   
Sbjct: 202 PPL--ENGFYYDGFFGNLKLGPNDYEKIEKRIDSIVKSDQKFQRLVVTKEEALELFAYNP 259

Query: 668 LGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTHVSSTGEIMLLYIVSES 714
                  +++++S +  DG + S         LC G H+  TG     ++   S
Sbjct: 260 F------KLQLISTKVPDGSLTSVYRIGSLVDLCRGPHLPRTGIAKAFWVNKNS 307


>gi|227504970|ref|ZP_03935019.1| threonyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
 gi|227198420|gb|EEI78468.1| threonyl-tRNA synthetase [Corynebacterium striatum ATCC 6940]
          Length = 687

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 30/189 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+           G  I  +G  FD    +P T   LK+IE  +  II 
Sbjct: 77  IRHSTAHVMAQAVQAEFPGTKLGIGPAI-ENGFYFDFQTDEPFTPEALKAIEKRMKKIIK 135

Query: 645 QNLPVVTRIMNREDAIAS------GAAALLGTKY--------------NDRVRVVSVEYE 684
                  R+ +  +   +          L+  K                D     ++   
Sbjct: 136 TGQRFERRVYSSNEEAEAALADEPFKLELIQDKGNVDPDSDEAAEVGAGDLTHYDNINPR 195

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHL 735
            G V    LC G H+ +T  I    +   S+        +AG++RI       + A    
Sbjct: 196 TGEVEWFDLCRGPHLPTTKYIPAFTLTRSSAAYWRGDQSKAGLQRIYGTAFESKEALEAY 255

Query: 736 MGQDEKLKS 744
                + + 
Sbjct: 256 QHMIAEAEK 264


>gi|114659237|ref|XP_510628.2| PREDICTED: threonyl-tRNA synthetase-like 2 [Pan troglodytes]
          Length = 801

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 41/221 (18%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIF---VHHAIVERGILRTEMSLVLTID---YQ 578
            G+ GDT   I     +++ D Q     ++    +    E      E +++  ++   + 
Sbjct: 152 YGKKGDTSNII----TVRVADGQTVQGEVWKTTPYQVAAEISQELAESTVIAKVNGELWD 207

Query: 579 NRRQLS------------------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             R L                     HS+ H+L  A+    G H+         +G  +D
Sbjct: 208 LDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGLPI--ENGFYYD 265

Query: 621 -VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYND 674
                + ++S EL ++E+    II +  P     +++E  +               K N 
Sbjct: 266 VFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVNT 325

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 326 ATTTV---YRCGPLID--LCKGPHVRHTGKIKTIKIFKNSS 361


>gi|325068893|ref|ZP_08127566.1| threonine--tRNA ligase [Actinomyces oris K20]
          Length = 683

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  +        G  IT DG  +D      +T   L+ IE  +  I+ 
Sbjct: 73  LRHSATHVMAQAVQEMFPDVNLGIGPFIT-DGFYYDFGAIDAVTPEMLREIEKRMKRIVK 131

Query: 645 QNLPVVTRIMNRED-----AIASGAAALLGTKY-NDRVRVVSVEY----------EDGGV 688
           +    V R +  +      A       L+ TK        V V             DG V
Sbjct: 132 EGQRFVRRDITEDQGSEELADQPYKLELITTKGAGAEGASVEVGAGGLTMYDNVRRDGTV 191

Query: 689 HSSALCGGTHVSSTGEIM-LLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDE 740
             + LC G H+ ST  I     +   SS           ++RI   T    +  L     
Sbjct: 192 AWTDLCRGPHLPSTRLIGQGFALTKSSSAYWKGDQSGDSLQRIYG-TAWATKDDLKAYQT 250

Query: 741 KLKSLAS 747
           +L   A 
Sbjct: 251 RLAEAAK 257


>gi|226320444|ref|ZP_03796010.1| threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
 gi|226234086|gb|EEH32801.1| threonyl-tRNA synthetase [Borrelia burgdorferi 29805]
          Length = 263

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 21/200 (10%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS  H++  A+  +  +     G  I  DG  +D    K IT   L  IE+ + +I+ 
Sbjct: 14  KRHSIAHVMAEAVLDLFPNTKIAIGPPI-KDGFYYDFEFKKQITEDSLLDIENRMREILK 72

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYN---DRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                   I++ E A+                D    VS+      V    LC G HV +
Sbjct: 73  TGSSFEKEIISVEQALEIFKDEPYKIDLIKNFDLQNEVSIYKSHNFVD---LCRGPHVEN 129

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             +I        +SI     R               ++  L  +   L  ++  +   + 
Sbjct: 130 MNKIDP-KAFKLTSIAGAYWR------------GSEKNPMLTRIYGTLWNNEKELRSYL- 175

Query: 762 EIWEEYRKLQLIHAKRKLQL 781
            + EE +K       ++L L
Sbjct: 176 NLREEIKKRDHRKLGKELDL 195


>gi|317125011|ref|YP_004099123.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Intrasporangium
           calvum DSM 43043]
 gi|315589099|gb|ADU48396.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Intrasporangium
           calvum DSM 43043]
          Length = 664

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 34/208 (16%)

Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLH 594
             G  + +  V  +   +F   A            +  +T+D  +   +   HS  H+L 
Sbjct: 31  AGGRDVVVARVNGELRDLFHLVAD--------GDVVEPVTVDSADGLAVLR-HSTAHVLA 81

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A+ ++  +     G  I  DG  +D     P    +LK++E  +  II +      R++
Sbjct: 82  QAVQSLDPTAKLGIGPPI-RDGFYYDFDVETPFHPDDLKALEKAMQKIINEGQTFERRVV 140

Query: 655 NREDAIASGAAALLG-------------------TKYNDRVRVVSVEYEDGGVHSSALCG 695
              DA+   A                              + +      DG      LC 
Sbjct: 141 TDADALEELAHEPYKCELVGLKGGAGDAAEGAGVEVGAGELTIYDNVRRDGTRAWGDLCR 200

Query: 696 GTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           G H+ ST  I     ++      A   R
Sbjct: 201 GPHIPSTKLIGNAFKLM---RSAAAYWR 225


>gi|298373605|ref|ZP_06983594.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274657|gb|EFI16209.1| threonine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 650

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVN 640
            +  H+++HL+  AL  +        G  I  +G  +DV     +   E  L+ +E  + 
Sbjct: 72  HAFWHTSSHLMAEALQELYPGVKFGIGPAI-ENGFYYDVELPAGVVIKEGDLEKVEKKMY 130

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAA---LLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           ++ A+   +    +++ DA+    +    L     ++        Y  GG     LC G 
Sbjct: 131 ELAARKETLRRSSISKADALEYFGSRGEHLKTELISELADGTITTYTQGGFTD--LCRGP 188

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRR 722
           H++ST EI  + ++S   +     R
Sbjct: 189 HLTSTAEIKAIKLLS---VAGAYWR 210


>gi|325103180|ref|YP_004272834.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
 gi|324972028|gb|ADY51012.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Pedobacter
           saltans DSM 12145]
          Length = 642

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 77/205 (37%), Gaps = 35/205 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ HLL  AL  +        G  I   G  +DV    +  +S +L+ IED + ++   
Sbjct: 73  HSSAHLLAEALEALYPGTKFGIGPAIET-GFYYDVDFGDRDFSSDDLRKIEDKMLELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH------SSALCGGTHV 699
                 + +++ DA+A         K ++    +  + EDG +        + LC G H+
Sbjct: 132 KETFERKAVSKSDALAY-----FTEKGDEYKLDLIKDLEDGKITFYSQGNFTDLCRGPHI 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756
                   +  +  +++     R     G  +R          K L     VS   Q  +
Sbjct: 187 PH---TGFIKALKLTNVAGAYWR-----GDESR----------KQLTRIYGVSFPKQSEL 228

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL 781
              ++ I EE +K       ++L+L
Sbjct: 229 TEYIQRI-EEAKKRDHRKLGKELEL 252


>gi|114659235|ref|XP_001144545.1| PREDICTED: threonyl-tRNA synthetase-like 2 [Pan troglodytes]
          Length = 802

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 41/221 (18%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIF---VHHAIVERGILRTEMSLVLTID---YQ 578
            G+ GDT   I     +++ D Q     ++    +    E      E +++  ++   + 
Sbjct: 152 YGKKGDTSNII----TVRVADGQTVQGEVWKTTPYQVAAEISQELAESTVIAKVNGELWD 207

Query: 579 NRRQLS------------------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
             R L                     HS+ H+L  A+    G H+         +G  +D
Sbjct: 208 LDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGLPI--ENGFYYD 265

Query: 621 -VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYND 674
                + ++S EL ++E+    II +  P     +++E  +               K N 
Sbjct: 266 VFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVNT 325

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
               V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 326 ATTTV---YRCGPLID--LCKGPHVRHTGKIKTIKIFKNSS 361


>gi|89891844|ref|ZP_01203345.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
 gi|89515749|gb|EAS18550.1| threonyl-tRNA synthetase [Flavobacteria bacterium BBFL7]
          Length = 648

 Score = 55.1 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 14/203 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I  G+   +          F    +  +  L  + SLVL        +
Sbjct: 15  ENGTTPMDVAMSISQGLARNVIS------ASFNGIKVETKTPLTEDGSLVLFTFSNPEGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  HS +H++  A+  +        G  I  +G  +D+   +   S  ++  IE  + +
Sbjct: 69  EAFWHSTSHIMAQAIEELFPGVSLTIGPAID-NGFYYDIDFKEHSISESDIPKIEARMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           I         R +++ DA+            +  + +    + + D    +  LC G H+
Sbjct: 128 IARGKHEFTMRSVSKADALQFYKDQNNPYKVELIENLTDGEITFCDHDTFTD-LCRGGHI 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +TG I  + I+S   I     R
Sbjct: 187 PNTGIIKAVKIMS---IAGAYWR 206


>gi|293192627|ref|ZP_06609581.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
 gi|292820134|gb|EFF79131.1| threonine--tRNA ligase [Actinomyces odontolyticus F0309]
          Length = 677

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 ++             + HSATH+L  A+  +        G  IT DG  +D  +
Sbjct: 46  PFEAGTTVEAITLASEDGLNILRHSATHVLAQAVQDVFPDVNLGIGPFIT-DGFYYDFGN 104

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-------------- 669
              +T   L+ +E  +  I+ +    V R ++ E+A+   A                   
Sbjct: 105 IDAVTPELLRDLEKRMKRIVKEGQRFVRREISEEEAVVELAEQPYKLELVTTKGKGAEGA 164

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM-LLYIVSESSI-----RAG-- 719
                   + +      DG V    LC G H+ ST  I     +   S+      +AG  
Sbjct: 165 SVEVGGGTLTMYDNVRRDGSVAWKDLCRGPHLPSTKLIGNGFALTKASAAYWKGDQAGDQ 224

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   ++  L+   E++K  
Sbjct: 225 LQRIYG-TAWASKEDLVAYQERIKEA 249


>gi|259507396|ref|ZP_05750296.1| threonine--tRNA ligase [Corynebacterium efficiens YS-314]
 gi|259165021|gb|EEW49575.1| threonine--tRNA ligase [Corynebacterium efficiens YS-314]
          Length = 699

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 45/198 (22%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  +G  +D   ++P T  +LK+IE  +  II 
Sbjct: 89  IRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDVAEPFTPEDLKTIEKRMKKIIK 147

Query: 645 QNLPVVTRIM----------------------------NREDAIASGAAALLGTKYNDRV 676
                  R+                             + ++A   GA         +  
Sbjct: 148 TGQKFERRVYESTEAAAAELADEPYKLELIQDKGNVDPDSDEATEVGA--------GELT 199

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQ 729
              +V      V  S LC G H+ +T  I    +   S+         AG++RI   T  
Sbjct: 200 AYDNVNPRTNEVEWSDLCRGPHIPTTRYIPAFALTRSSAAYWRGDQTNAGLQRIYG-TAW 258

Query: 730 RARSHLMGQDEKLKSLAS 747
            ++  L      L     
Sbjct: 259 ESKEKLDEYQTMLAEAEK 276


>gi|326533164|dbj|BAJ93554.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVN 640
           + +  HS+ H+L  +L  + G  +         +G  +D  +    +       I+    
Sbjct: 144 RDTFWHSSAHILGESLERVYGCKLCIGPCTTRGEGFYYDAHYKDLTLNDTHFGLIDKQAK 203

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +A+  P     ++R +A+   A         N+     ++     G     LC G H+
Sbjct: 204 KAVAEKQPFERIEVSRAEALEIFAENEFKVEIINELPEDKTITVYRCGP-LVDLCRGPHI 262

Query: 700 SSTGEIMLLYIVSESSI-------RAGIRRIEAIT---GQRARSHLMGQDEKLKSLASFL 749
            +T  +     +  S+        R  ++R+  I+    +R + +L   +E  K     L
Sbjct: 263 PNTSFVKAFACLKASASYWRGKADRESLQRVYGISFPDSKRLKEYLHMIEEAKKRDHRLL 322

Query: 750 KVSQG 754
             SQ 
Sbjct: 323 GQSQE 327


>gi|73919784|sp|Q8FPJ3|SYT_COREF RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 694

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 62/198 (31%), Gaps = 45/198 (22%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  +G  +D   ++P T  +LK+IE  +  II 
Sbjct: 84  IRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDVAEPFTPEDLKTIEKRMKKIIK 142

Query: 645 QNLPVVTRIM----------------------------NREDAIASGAAALLGTKYNDRV 676
                  R+                             + ++A   GA         +  
Sbjct: 143 TGQKFERRVYESTEAAAAELADEPYKLELIQDKGNVDPDSDEATEVGA--------GELT 194

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQ 729
              +V      V  S LC G H+ +T  I    +   S+         AG++RI   T  
Sbjct: 195 AYDNVNPRTNEVEWSDLCRGPHIPTTRYIPAFALTRSSAAYWRGDQTNAGLQRIYG-TAW 253

Query: 730 RARSHLMGQDEKLKSLAS 747
            ++  L      L     
Sbjct: 254 ESKEKLDEYQTMLAEAEK 271


>gi|73951033|ref|XP_857231.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 4
           [Canis familiaris]
          Length = 798

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G H+         +G  +D     + ++S EL ++E+    II
Sbjct: 229 YWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRAVSSTELSALENICKTII 286

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +  P     +++E  +          +  +     S            LC G HV  TG
Sbjct: 287 KEKQPFERLEISKEVLLEMFKYNKFKCRILNEKVHTSTTTVYRCGPLIDLCKGPHVRHTG 346

Query: 704 EIMLLYIVSESS 715
           +I  + I   SS
Sbjct: 347 KIKAIKIFKNSS 358


>gi|330995385|ref|ZP_08319295.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
 gi|329575880|gb|EGG57404.1| threonine--tRNA ligase [Paraprevotella xylaniphila YIT 11841]
          Length = 647

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S++L        + +  H++ HL+  A+  +        G  I  +G  +DV  
Sbjct: 50  PINEDASVMLYKWEDAEGKHAFWHTSAHLMAEAMQELYPGMQFGIGPAI-ENGFYYDVMP 108

Query: 624 SKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                I  ++   IE  + ++  +  PVV   ++      +GA    G +       +  
Sbjct: 109 PAGTVIRESDFAGIEKKMLELAQRKEPVVRAEIS-----KAGALKFFGERGQTYKNELIE 163

Query: 682 EYEDGGVHS------SALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           + EDG + +      + LC G H+ +     ++  V  +++ +   R
Sbjct: 164 DLEDGHISTYTQGAFTDLCRGPHLMN---TGVIKAVKVTAVSSAYWR 207


>gi|296117779|ref|ZP_06836362.1| threonine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969010|gb|EFG82252.1| threonine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 691

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 31/211 (14%)

Query: 564 ILRTEMSLVLTIDY-QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            + TE S+   +   +   +  I HS  H+L  A+           G  I  +G  +D  
Sbjct: 55  HVPTEDSVFTPVAACEEDGRAVIRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFQ 113

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIM-NREDAIASGAAALLGTKYNDRVRVVSV 681
             +P T  +LK IE  +  II         +  + E+A  +        +  +    V  
Sbjct: 114 TEEPFTPEDLKVIEKRMKKIIKTGQRFERGVFASNEEAAEALRDEPFKLELVEDKGNVDP 173

Query: 682 EYED-------------------GGVHSSALCGGTHVSSTGEIMLLYIVSESS------- 715
             ++                     V  S LC G H+ +T  I    +   S+       
Sbjct: 174 NSDEATEVGSGELTYYDNVNPRSNEVEWSDLCRGPHIPTTKYIPAFTLTRSSAAYWRGDQ 233

Query: 716 IRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
             AG++RI       + +        E+ + 
Sbjct: 234 NNAGLQRIYGTAWESKESLEAYQMMMEEAEK 264


>gi|298206753|ref|YP_003714932.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
 gi|83849384|gb|EAP87252.1| threonyl-tRNA synthetase [Croceibacter atlanticus HTCC2559]
          Length = 648

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 14/203 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           EAG    D   +I +G+   +          F    +     L  + SL+L        +
Sbjct: 15  EAGATAMDVAKSISEGLARNVIS------ASFNGTKVETTTPLHEDGSLILFTFRDEEGK 68

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
            +  HS +H++  AL  +        G  I  +G  +D+    + I+  + K IED + +
Sbjct: 69  KAFWHSTSHVMADALQQLYPGIKLTIGPAID-NGFYYDIDFGDQKISENDFKKIEDKMLE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           I         R + + +A+            +  + +    + + D    +  LC G H+
Sbjct: 128 IARGKHEFQLRSVTKAEALEFYKNENNPFKVELIENLTDGDITFCDHSNFTD-LCRGGHI 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +TG I  + ++   +I     R
Sbjct: 187 PNTGIIKAVKLL---NIAGAYWR 206


>gi|262402851|ref|ZP_06079412.1| predicted metal-dependent hydrolase [Vibrio sp. RC586]
 gi|262351633|gb|EEZ00766.1| predicted metal-dependent hydrolase [Vibrio sp. RC586]
          Length = 297

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 78/245 (31%), Gaps = 46/245 (18%)

Query: 511 VEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQ 547
           V+VV  +TPF+  +        D G  I  G    +TD                    V+
Sbjct: 31  VDVVTYKTPFHPVSHIWPDHPADRGAFIWQGEEYPVTDCLVGAIEQASGHLYVGSDIPVK 90

Query: 548 KKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +   G   + VH        L+   S+ L +D Q +  LS  HSA HL + AL+ +L   
Sbjct: 91  RDEAGWIFVVVHRLSQMPPALKVGESVKLVVDAQYQASLSRGHSAGHLAYLALNKVLAQS 150

Query: 605 VSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +  +        FD            P  S +L  +   +      +  V+  +   E
Sbjct: 151 YWRKDADRKDPHGYFDFNSYAQISSSVTPNCSTDLYRLGKTLRKRGLNSDDVLRYLDLIE 210

Query: 658 DAIASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                     L           G    D    V   +E  G  +   CGGTH        
Sbjct: 211 KNTNQQLVQWLALASPIQLECEGLALTDSRYWVCDLHE--GSVARIPCGGTHTKGLEAFR 268

Query: 707 LLYIV 711
           ++ +V
Sbjct: 269 MIKVV 273


>gi|73951037|ref|XP_536172.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 1
           [Canis familiaris]
          Length = 802

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G H+         +G  +D     + ++S EL ++E+    II
Sbjct: 232 YWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRAVSSTELSALENICKTII 289

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +  P     +++E  +          +  +     S            LC G HV  TG
Sbjct: 290 KEKQPFERLEISKEVLLEMFKYNKFKCRILNEKVHTSTTTVYRCGPLIDLCKGPHVRHTG 349

Query: 704 EIMLLYIVSESS 715
           +I  + I   SS
Sbjct: 350 KIKAIKIFKNSS 361


>gi|73951029|ref|XP_857141.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 2
           [Canis familiaris]
          Length = 799

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G H+         +G  +D     + ++S EL ++E+    II
Sbjct: 229 YWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRAVSSTELSALENICKTII 286

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +  P     +++E  +          +  +     S            LC G HV  TG
Sbjct: 287 KEKQPFERLEISKEVLLEMFKYNKFKCRILNEKVHTSTTTVYRCGPLIDLCKGPHVRHTG 346

Query: 704 EIMLLYIVSESS 715
           +I  + I   SS
Sbjct: 347 KIKAIKIFKNSS 358


>gi|154508918|ref|ZP_02044560.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798552|gb|EDN80972.1| hypothetical protein ACTODO_01429 [Actinomyces odontolyticus ATCC
           17982]
          Length = 677

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 26/206 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
                 ++             + HSATHLL  A+  +        G  IT DG  +D  +
Sbjct: 46  PFEAGTTVEAITLASEDGLNILRHSATHLLAQAVQDVFPDVNLGIGPFIT-DGFYYDFGN 104

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-------------- 669
              +T   L+ +E  +  I+ +    V R ++ E+A+   A                   
Sbjct: 105 IDAVTPELLRDLEKRMKRIVKEGQRFVRREISEEEAVVELAEQPYKLELVTTKGKGAEGA 164

Query: 670 --TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM-LLYIVSESSI-----RAG-- 719
                   + +      DG V    LC G H+ ST  I     +   S+      +AG  
Sbjct: 165 SVEVGGGTLTMYDNVRRDGSVAWKDLCRGPHLPSTKLIGNGFALTKASAAYWKGDQAGDQ 224

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSL 745
           ++RI   T   ++  L+   E++K  
Sbjct: 225 LQRIYG-TAWASKDDLVAYQERIKEA 249


>gi|300772848|ref|ZP_07082717.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759019|gb|EFK55846.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 641

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 37/206 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ HL+  AL  +        G  I   G  +DV    +  +S E K IED + ++  +
Sbjct: 73  HSSAHLMAEALEALYPGVKFGIGPAIET-GFYYDVDFGDREFSSDEFKQIEDKMLELAKR 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTHV 699
                 R +++ +A+          K ++    +  + EDG +        + LC G H+
Sbjct: 132 KEVFERRAVSKAEALDY-----FTEKGDEYKLDLIKDLEDGKITFYSQGDFTDLCRGPHI 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE----KLKSLASFLKVSQGN 755
            +      +  +  +++     R     G  +R  L         K   L  +LK     
Sbjct: 187 PN---TGFIKAIKLTNVAGAYWR-----GDESRKQLTRIYGVTFPKASELTDYLK----- 233

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
                    EE +K       ++L+L
Sbjct: 234 -------FIEEAKKRDHRKLGKELEL 252


>gi|73951035|ref|XP_857273.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2 isoform 5
           [Canis familiaris]
          Length = 687

 Score = 54.7 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G H+         +G  +D     + ++S EL ++E+    II
Sbjct: 229 YWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRAVSSTELSALENICKTII 286

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            +  P     +++E  +          +  +     S            LC G HV  TG
Sbjct: 287 KEKQPFERLEISKEVLLEMFKYNKFKCRILNEKVHTSTTTVYRCGPLIDLCKGPHVRHTG 346

Query: 704 EIMLLYIVSESS 715
           +I  + I   SS
Sbjct: 347 KIKAIKIFKNSS 358


>gi|260062396|ref|YP_003195476.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
 gi|88783959|gb|EAR15130.1| threonyl-tRNA synthetase [Robiginitalea biformata HTCC2501]
          Length = 646

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDI 642
           +  HS++H+L  AL  +        G  I  +G  +DV   +   S  +  +IE    +I
Sbjct: 70  AFWHSSSHVLAQALEELYPGIKLTIGPAID-NGFYYDVDLGEHTISEKDFPAIEKKALEI 128

Query: 643 IAQNLPVVTRIMNREDAIASG--AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                    R ++++DA+A           +  + +    + + D    +  LC G H+ 
Sbjct: 129 ARGKHDFRMREVSKKDALAYYKDERNPYKLELIENLEDGDITFCDHDTFTD-LCRGGHIP 187

Query: 701 STGEIMLLYIVSESSIRAGIRR 722
           +TG I    ++   ++     R
Sbjct: 188 NTGLIKAFKVL---NVAGAYWR 206


>gi|227537393|ref|ZP_03967442.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242771|gb|EEI92786.1| threonine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 641

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 37/206 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ HL+  AL  +        G  I   G  +DV    +  +S E K IED + ++  +
Sbjct: 73  HSSAHLMAEALEALYPGVKFGIGPAIET-GFYYDVDFGDREFSSDEFKQIEDKMLELAKR 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTHV 699
                 + +++ +A+          K ++    +  + EDG +        + LC G H+
Sbjct: 132 KEVFERKAVSKAEALDY-----FTEKGDEYKLDLIKDLEDGKITFYSQGDFTDLCRGPHI 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE----KLKSLASFLKVSQGN 755
            +      +  +  +++     R     G  +R  L         K   L  +LK     
Sbjct: 187 PN---TGFIKAIKLTNVAGAYWR-----GDESRKQLTRIYGVTFPKASELTDYLK----- 233

Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL 781
                    EE +K       ++L+L
Sbjct: 234 -------FIEEAKKRDHRKLGKELEL 252


>gi|227503501|ref|ZP_03933550.1| threonyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
 gi|227076004|gb|EEI13967.1| threonyl-tRNA synthetase [Corynebacterium accolens ATCC 49725]
          Length = 687

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 30/189 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+           G  I  +G  FD   ++P T  +LK++E  +  II 
Sbjct: 77  IRHSCAHVMAQAVQAEFPGTKLGIGPSI-ENGFYFDFQTAEPFTPEDLKNLEKRMKKIIK 135

Query: 645 QNLPVVTRIM----NREDAIASGAAAL-----LGTKYNDRVRVVSVEYEDGGVHSS---- 691
                           E A+      L      G    D      V   D   + +    
Sbjct: 136 GGQRFERHTYASTAEAEQALQDEPFKLELIQDKGNVDPDSDEAAEVGAGDLTHYDNVNPR 195

Query: 692 -------ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHL 735
                   LC G HV +T  I    +   S+         AG++RI       + A +  
Sbjct: 196 TNEVEWFDLCRGPHVPTTKYIPAFALTRSSAAYWRGDQANAGLQRIYGTAFESKDALAAY 255

Query: 736 MGQDEKLKS 744
               E+ + 
Sbjct: 256 QTMVEEAEK 264


>gi|306836251|ref|ZP_07469233.1| threonine--tRNA ligase [Corynebacterium accolens ATCC 49726]
 gi|304567843|gb|EFM43426.1| threonine--tRNA ligase [Corynebacterium accolens ATCC 49726]
          Length = 687

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 30/189 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H++  A+           G  I  +G  FD   ++P T  +LK++E  +  II 
Sbjct: 77  IRHSCAHVMAQAVQAEFPGTKLGIGPSI-ENGFYFDFQTAEPFTPEDLKNLEKRMKKIIK 135

Query: 645 QNLPVVTRIM----NREDAIASGAAAL-----LGTKYNDRVRVVSVEYEDGGVHSS---- 691
                           E A+      L      G    D      V   D   + +    
Sbjct: 136 GGQRFERHTYASTAEAEQALQDEPFKLELIQDKGNVDPDSDEAAEVGVGDLTHYDNVNPR 195

Query: 692 -------ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT--GQRARSHL 735
                   LC G HV +T  I    +   S+         AG++RI       + A +  
Sbjct: 196 TNEVEWFDLCRGPHVPTTKYIPAFALTRSSAAYWRGDQANAGLQRIYGTAFESKDALAAY 255

Query: 736 MGQDEKLKS 744
               E+ + 
Sbjct: 256 QTMVEEAEK 264


>gi|323499817|ref|ZP_08104776.1| hypothetical protein VISI1226_15256 [Vibrio sinaloensis DSM 21326]
 gi|323315058|gb|EGA68110.1| hypothetical protein VISI1226_15256 [Vibrio sinaloensis DSM 21326]
          Length = 286

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 83/249 (33%), Gaps = 46/249 (18%)

Query: 507 SGQKVEVVFDQTPFYAEA---GGQLGDTGCAIG-------------DGIRLQI---TDVQ 547
             + + VV ++TPF+  +        D G   G             +   L +     V+
Sbjct: 27  DEEFLLVVTERTPFHPVSHIWPDHPADRGTLNGHSVLDCQIGAVELESGELFVGKAIPVK 86

Query: 548 KKAEGIFVHHAIVERG---ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST--ILG 602
           +   G          G    +     + L +D   +  LS  HSA H+ + AL+   + G
Sbjct: 87  RDEPGWVFVVVHCLAGNVTEINENDVVTLEVDKAYQLSLSRGHSAGHIAYLALNKVLVEG 146

Query: 603 SHVSQNGSCITPDGLRFDVTHSK------PITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            +  ++     P G     ++++           +   +   +      +  VV  +   
Sbjct: 147 GYWRKDADRKDPHGNYDFNSYAQESSFVSEDQCVDTYRLGKTLRKRGLNSADVVQDLSVI 206

Query: 657 EDAIASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           E+ +    AA L           G +  D    +    E  G  +   CGGTHVSS  E 
Sbjct: 207 EEQVNQQIAAWLSLGSDIVVECSGERLTDSRYWLCDLNE--GEIAKIPCGGTHVSSLKE- 263

Query: 706 MLLYIVSES 714
               I+S S
Sbjct: 264 --FSIISTS 270


>gi|332043129|gb|EGI79326.1| threonyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 644

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDI 642
           +  HS+ H+L  A+  +  +     G  I   G  +DV     + +  + K++E+ + +I
Sbjct: 70  AFWHSSAHVLAQAIQELYPNAKLTIGPAIER-GFYYDVDFGDDVLTDKDFKAVENKMLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
                    R   + +A+         T+    +   ++ + D    +  LC G H+ +T
Sbjct: 129 ARGKHDFNMRSATKAEALELYKNNPFKTELIQNLEDGTITFCDHSTFTD-LCRGGHIPNT 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK----LKSLASFLKVSQGNVVG 758
           G I  + ++S   +     R     G   +  L           K L  +L         
Sbjct: 188 GIIKAVKVLS---VAGAYWR-----GDETKPQLTRVYGISFPKQKELTEYL--------- 230

Query: 759 RVEEIWEEYRKLQLIHAKRKLQL 781
               + EE +K       ++L+L
Sbjct: 231 ---ALLEEAKKRDHRKLGKELEL 250


>gi|224002114|ref|XP_002290729.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974151|gb|EED92481.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 791

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP---DGLRFDVTHSKPITS 629
           L  +     +    HS+ H++  AL  + GS ++           D    D +    +  
Sbjct: 207 LKFEDDVDARTVFWHSSAHVMGEALERLYGSRLTIGPPLAGGFYYDSYMGDSSSDGALKE 266

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-----KYNDRVRVVSVEYE 684
            + K +E  V  I+         ++ +E+A+   A           K  D  R       
Sbjct: 267 EDYKPVEAEVQKIVKSKQKFERLVVTKEEALDMFAGNPFKEQIISTKIADGSRTTVYRCG 326

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           D       LC G HV +TG I        S+
Sbjct: 327 DL----VDLCRGPHVPNTGRIKAFAATRHSA 353


>gi|194206357|ref|XP_001491149.2| PREDICTED: similar to threonyl-tRNA synthetase-like 2 [Equus
           caballus]
          Length = 754

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G H+         +G  +D     + ++S EL ++E     II
Sbjct: 184 YWHSSAHILGEAMELYYGGHLCYGPPI--ENGFYYDMFIEDRAVSSTELSALEGMCKTII 241

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        +++E  +               K N     V   Y  G +    LC G H
Sbjct: 242 KEKQAFERLEVSKEVLLEMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCKGPH 296

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  + I   SS
Sbjct: 297 VRHTGKIKAIKIFKNSS 313


>gi|145483725|ref|XP_001427885.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394968|emb|CAK60487.1| unnamed protein product [Paramecium tetraurelia]
          Length = 610

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 20/211 (9%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT----DVQKKAEGIFVHHAIVERGIL- 565
           + + F +  F+ + GGQ  D G  I       I     D Q +   + +  +     +L 
Sbjct: 400 IRIQFYENIFHPQGGGQPDDVGSIIIGDKEFIIKNMYNDRQHQESYVDIEFSQEAYDLLL 459

Query: 566 ---RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
                +  ++  ++ + R   S  HSA HLL   L       +          G+ F   
Sbjct: 460 DCRTKKTPILQKVNPEVRLIHSQLHSAGHLLKEEL-------IKLGKGLKYIKGMHFQKE 512

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               +       IE    +   Q+L +                     ++++ VR + + 
Sbjct: 513 SYILLEGEFEIPIEQIPREFQFQDLQLSICYYTHNKVFEILGYVPEFVEFSEMVRWIKLR 572

Query: 683 YEDGGVHSSALCGGTH-VSSTGEIMLLYIVS 712
            +D G      C GTH V    +I +  I+ 
Sbjct: 573 DQDIGF----PCYGTHTVKGLDKIQITNILK 599


>gi|148706886|gb|EDL38833.1| threonyl-tRNA synthetase-like 1 [Mus musculus]
          Length = 630

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A    LG+ + +  S  +     F +   + + SAEL  +E    ++IA  
Sbjct: 45  HSSAHVLGAAAEQQLGAVLCRGPSTESGFYHDFFLGKERTVRSAELPILERICQELIAAA 104

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G   S  LC G H+  TG+I 
Sbjct: 105 QPFRRLEASRDQLRQLFKDNHFKLHLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIG 164

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 165 ALKLLTNSS 173


>gi|254692865|ref|NP_082207.2| threonyl-tRNA synthetase, mitochondrial isoform 1 [Mus musculus]
 gi|118597388|sp|Q3UQ84|SYTM_MOUSE RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|74216488|dbj|BAE25159.1| unnamed protein product [Mus musculus]
 gi|187956085|gb|AAI47502.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus]
          Length = 723

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A    LG+ + +  S  +     F +   + + SAEL  +E    ++IA  
Sbjct: 138 HSSAHVLGAAAEQQLGAVLCRGPSTESGFYHDFFLGKERTVRSAELPILERICQELIAAA 197

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G   S  LC G H+  TG+I 
Sbjct: 198 QPFRRLEASRDQLRQLFKDNHFKLHLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIG 257

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 258 ALKLLTNSS 266


>gi|254692867|ref|NP_001157089.1| threonyl-tRNA synthetase, mitochondrial isoform 2 [Mus musculus]
 gi|14290460|gb|AAH08995.1| Tars2 protein [Mus musculus]
          Length = 697

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A    LG+ + +  S  +     F +   + + SAEL  +E    ++IA  
Sbjct: 138 HSSAHVLGAAAEQQLGAVLCRGPSTESGFYHDFFLGKERTVRSAELPILERICQELIAAA 197

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G   S  LC G H+  TG+I 
Sbjct: 198 QPFRRLEASRDQLRQLFKDNHFKLHLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIG 257

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 258 ALKLLTNSS 266


>gi|12847728|dbj|BAB27683.1| unnamed protein product [Mus musculus]
          Length = 723

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A    LG+ + +  S  +     F +   + + SAEL  +E    ++IA  
Sbjct: 138 HSSAHVLGAAAEQQLGAVLCRGPSTESGFYHDFFLGKERTVRSAELPILERICQELIAAA 197

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G   S  LC G H+  TG+I 
Sbjct: 198 QPFRRLEASRDQLRQLFKDNHFKLHLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIG 257

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 258 ALKLLTNSS 266


>gi|254692873|ref|NP_001157091.1| threonyl-tRNA synthetase, mitochondrial isoform 4 [Mus musculus]
 gi|74218920|dbj|BAE37840.1| unnamed protein product [Mus musculus]
          Length = 423

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A    LG+ + +  S  +     F +   + + SAEL  +E    ++IA  
Sbjct: 138 HSSAHVLGAAAEQQLGAVLCRGPSTESGFYHDFFLGKERTVRSAELPILERICQELIAAA 197

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G   S  LC G H+  TG+I 
Sbjct: 198 QPFRRLEASRDQLRQLFKDNHFKLHLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIG 257

Query: 707 LLYIVSESS 715
            L +++ SS
Sbjct: 258 ALKLLTNSS 266


>gi|319948489|ref|ZP_08022623.1| threonyl-tRNA synthetase [Dietzia cinnamea P4]
 gi|319437856|gb|EFV92842.1| threonyl-tRNA synthetase [Dietzia cinnamea P4]
          Length = 699

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 71/221 (32%), Gaps = 41/221 (18%)

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
             +  + L        +  I HS  H+L  A+           G  I  +G  +D   ++
Sbjct: 65  EADTEVELVRADTEDGRSVIRHSCAHVLAQAVQDKFPEAKLGIGPPI-ENGFYYDFDVAE 123

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIM-NREDAIAS---------------------- 662
           P T  +LK +E  +  II        R   + ++A A                       
Sbjct: 124 PFTPEDLKDLEKRMKKIIKAGQRFSRREYASLDEARAELAGEPYKLELIEDKGRADAGDE 183

Query: 663 -GAAALLGTKYNDRVRVVSVEYED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESS- 715
            GA AL  ++  +        Y++     G V  S LC G H  +T  I    +   S+ 
Sbjct: 184 SGAEALEDSEIMEVGAGALTAYDNLNPRTGEVIWSDLCRGPHTPTTKFIPAFTLTRSSAA 243

Query: 716 ------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
                   AG++RI       A       D  L  LA   K
Sbjct: 244 YWRGDQSNAGLQRIYGT----AWESTEAMDAYLDRLAEAEK 280


>gi|294941856|ref|XP_002783274.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239895689|gb|EER15070.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 837

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 111/294 (37%), Gaps = 26/294 (8%)

Query: 429 ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488
           A A  L   +   +K++ + +E+  A       ++      KE RK   +  P+D+  G+
Sbjct: 32  ATAPYLKETTELFDKLYAAQEERLAALPKDPITIVLPDGTQKEGRK--FETTPLDIAIGI 89

Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548
           S  +   V   +I+         +VV       ++ G   GD G    D     +  V+ 
Sbjct: 90  SKGLANSVVAAKILYTEPVDSMDQVVAADDE--SDVGSDAGDEG--SDDEEEAHVNTVKA 145

Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608
             +      +    G  + E   +L  D    +  +  HS+ H+L  A+    G +++  
Sbjct: 146 WQKETVWDLSRPLEGSCKLE---LLKFDSPEGKD-TFWHSSAHILGEAMEQEYGCYLTIG 201

Query: 609 GSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
                 +G  +D    +  +   + + IE  ++ I+  +      ++ +E+A+   A   
Sbjct: 202 PPL--ENGFYYDGFFGNLKLGPNDYEKIEKRIDSIVKSDQKFQRLVVTKEEALELFAYNP 259

Query: 668 LGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTHVSSTGEIMLLYIVSES 714
                  +++++S +  DG + S         LC G H+  TG     ++   S
Sbjct: 260 F------KLQLISTKVPDGSLTSVYRIGSLVDLCRGPHLPRTGIAKAFWVNKNS 307


>gi|153824583|ref|ZP_01977250.1| hypothetical protein A5A_0744 [Vibrio cholerae MZO-2]
 gi|149741801|gb|EDM55830.1| hypothetical protein A5A_0744 [Vibrio cholerae MZO-2]
          Length = 305

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 81/259 (31%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNDIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDIYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH     ++   
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCK---DLTAF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKKVDEQHIEAVT 297


>gi|115475758|ref|NP_001061475.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|38175524|dbj|BAD01219.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|38175707|dbj|BAD01414.1| putative threonyl-tRNA synthetase [Oryza sativa Japonica Group]
 gi|113623444|dbj|BAF23389.1| Os08g0295300 [Oryza sativa Japonica Group]
 gi|215687347|dbj|BAG91912.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 745

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 12/193 (6%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVN 640
           + +  HS+ H+L  +L    G  +         +G  +D  ++    +      I+    
Sbjct: 178 RDTFWHSSAHILGESLERAYGCKLCIGPCTTRGEGFYYDAYYNDLTLNETHFGIIDAQAQ 237

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +A+  P     ++R +A+   A         N+     ++     G     LC G H+
Sbjct: 238 KAVAEKQPFERIEVSRAEALEMFAENKFKVEIINELPEDKTITVYRCGP-LVDLCRGPHI 296

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            +T  +     +  SS      R +A   + QR         ++LK     L        
Sbjct: 297 PNTSFVKAFACLKASSS---YWRGKADRESLQRVYGISFPDSKRLKEYKHLL----EEAK 349

Query: 758 GRVEEIWEEYRKL 770
            R   +  + + L
Sbjct: 350 KRDHRLLGQTQDL 362


>gi|218200880|gb|EEC83307.1| hypothetical protein OsI_28676 [Oryza sativa Indica Group]
          Length = 716

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 12/193 (6%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVN 640
           + +  HS+ H+L  +L    G  +         +G  +D  ++    +      I+    
Sbjct: 178 RDTFWHSSAHILGESLERAYGCKLCIGPCTTRGEGFYYDAYYNDLTLNETHFGIIDAQAQ 237

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +A+  P     ++R +A+   A         N+     ++     G     LC G H+
Sbjct: 238 KAVAEKQPFERIEVSRAEALEMFAENKFKVEIINELPEDKTITVYRCGP-LVDLCRGPHI 296

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            +T  +     +  SS      R +A   + QR         ++LK     L        
Sbjct: 297 PNTSFVKAFACLKASSS---YWRGKADRESLQRVYGISFPDSKRLKEYKHLL----EEAK 349

Query: 758 GRVEEIWEEYRKL 770
            R   +  + + L
Sbjct: 350 KRDHRLLGQTQDL 362


>gi|227514263|ref|ZP_03944312.1| possible serine 3-dehydrogenase [Lactobacillus fermentum ATCC
           14931]
 gi|227087376|gb|EEI22688.1| possible serine 3-dehydrogenase [Lactobacillus fermentum ATCC
           14931]
          Length = 326

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 14/148 (9%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           TG  A + L    ++LK +A+ L  +   VV    ++  + + L     K++L+   + L
Sbjct: 20  TGLAAMARLKAAHQQLKEVATALSTTPEEVVAAASDLLAKNKAL-----KKQLKAATKAL 74

Query: 787 SCHKIADVNFMSHIISEV------DSKELKSVMDALQKKIQSGIIMLVGISKEKKAS--V 838
              + A V      +++V      D   L  ++     +       L  +  E KA+   
Sbjct: 75  MAQQAAQVLASGQQVNKVHIESAGDISVLAPLVLKGAGEETLLWAKLQAVVDEIKAAGGQ 134

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGG 866
               T D+ D  +  DL   +A+   GG
Sbjct: 135 ASYRTVDVTDLQSVKDLV-AAAQAEFGG 161


>gi|258644607|dbj|BAI39857.1| putative threonyl-tRNA synthetase [Oryza sativa Indica Group]
          Length = 749

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVN 640
           + +  HS+ H+L  +L    G  +         +G  +D  ++    +      I+    
Sbjct: 182 RDTFWHSSAHILGESLERAYGCKLCIGPCTTRGEGFYYDAYYNDLTLNETHFGIIDAQAQ 241

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +A+  P     ++R +A+   A         N+     ++     G     LC G H+
Sbjct: 242 KAVAEKQPFERIEVSRAEALEMFAENKFKVEIINELPEDKTITVYRCGP-LVDLCRGPHI 300

Query: 700 SSTGEIMLLYIVSESS 715
            +T  +     +  SS
Sbjct: 301 PNTSFVKAFACLKASS 316


>gi|213580235|ref|ZP_03362061.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 168

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685
           +N  V+ + ++  +A  +      G  Y   +   ++ ++D
Sbjct: 130 KNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDD 168


>gi|260940036|ref|XP_002614318.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238852212|gb|EEQ41676.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 722

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 13/157 (8%)

Query: 567 TEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS- 624
              +++  +D+++    +   HS+ H+L  A     G H+S      T DG  +D++ + 
Sbjct: 122 EGDAVLEFLDFEHPEGKAVFWHSSAHVLGEACECHYGCHLSYGPP--TEDGFFYDMSIND 179

Query: 625 --KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
               ++  +  +IE     II +    V   M +E+ +          K+         +
Sbjct: 180 GEGVVSQDDFGTIEKVSTKIIKEKQKFVRLEMTKEELLKMFEYNKYKVKFISEK---VPD 236

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
                V+       LC G H+  TG+I    ++  SS
Sbjct: 237 GTSTTVYRCGPLIDLCRGPHILHTGKIKAFKVLKNSS 273


>gi|325283002|ref|YP_004255543.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
 gi|324314811|gb|ADY25926.1| threonyl-tRNA synthetase [Deinococcus proteolyticus MRP]
          Length = 650

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 25/205 (12%)

Query: 585 INHSATHLLHHALSTIL---GSHVSQNGSCITP---DGLRFDVTHSKPITSAELKSIEDN 638
             HS  H++  A+       G    Q    + P   +G   D    +P++  +L  IE  
Sbjct: 71  FRHSLGHVMSQAVGEFYAAKGYSADQLKRGVGPAIENGWYQDFDLPEPLSEDDLPEIERL 130

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGT 697
           + DII + L    R +++ +A    A          D      V     G ++  LC G 
Sbjct: 131 MRDIIGRKLDFSRREVSKAEATEFFAHDPYKAELIRDLPEDEVVTLYMQGDYTD-LCRGP 189

Query: 698 HVSSTGEI-MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756
           H  +TG +     ++S S                A       +  L+ +      +Q  +
Sbjct: 190 HFPTTGRLPTAFKLMSTSG---------------AYWRGNENNPILQRIYGVAFATQKEL 234

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL 781
              +  + EE ++       ++L L
Sbjct: 235 DEYL-HLLEEAKRRDHRRLGKELDL 258


>gi|222640294|gb|EEE68426.1| hypothetical protein OsJ_26793 [Oryza sativa Japonica Group]
          Length = 701

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 12/193 (6%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVN 640
           + +  HS+ H+L  +L    G  +         +G  +D  ++    +      I+    
Sbjct: 134 RDTFWHSSAHILGESLERAYGCKLCIGPCTTRGEGFYYDAYYNDLTLNETHFGIIDAQAQ 193

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
             +A+  P     ++R +A+   A         N+     ++     G     LC G H+
Sbjct: 194 KAVAEKQPFERIEVSRAEALEMFAENKFKVEIINELPEDKTITVYRCGP-LVDLCRGPHI 252

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757
            +T  +     +  SS      R +A   + QR         ++LK     L        
Sbjct: 253 PNTSFVKAFACLKASSS---YWRGKADRESLQRVYGISFPDSKRLKEYKHLL----EEAK 305

Query: 758 GRVEEIWEEYRKL 770
            R   +  + + L
Sbjct: 306 KRDHRLLGQTQDL 318


>gi|312077291|ref|XP_003141239.1| threonyl-tRNA synthetase [Loa loa]
 gi|307763596|gb|EFO22830.1| threonyl-tRNA synthetase [Loa loa]
          Length = 681

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 4/145 (2%)

Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSA 630
           +L  D    +Q+   HS+ H++  A+    G H+      +  +G  +D       IT  
Sbjct: 101 ILKFDDDEGKQV-FWHSSAHIMGEAMERYCGGHLCYGPPIL--EGFYYDMWKEGSAITPD 157

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           +   +E  +  ++    P    ++++ED +          +  +                
Sbjct: 158 DFPKLEQIIKCVVKDKQPFERLVVSKEDLLQMFKYNKFKVRIINEKITTPFTTVYRCGPL 217

Query: 691 SALCGGTHVSSTGEIMLLYIVSESS 715
             LC G HV  TG++  L ++  SS
Sbjct: 218 IDLCRGPHVRHTGKVKALSVIKTSS 242


>gi|255531804|ref|YP_003092176.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
 gi|255344788|gb|ACU04114.1| threonyl-tRNA synthetase [Pedobacter heparinus DSM 2366]
          Length = 641

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 25/176 (14%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H++  AL  +        G  I   G  +DV    +  +S + K IE  + ++  Q
Sbjct: 73  HSSAHIMAEALEALYPGTKFGIGPAIET-GFYYDVDFGDREFSSDDFKEIEAKILELARQ 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTH 698
                 + +++ DAI          +  D  ++  +E    G  +       + LC G H
Sbjct: 132 KEVFERKAVSKADAIKYF------EEKGDEYKLDLLEGLQDGKITFYTQGEFTDLCRGPH 185

Query: 699 VSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRAR---SHLMGQDEKLKS 744
           + +TG +  + +++ +         R  + RI  +T  +A     +L   +E  K 
Sbjct: 186 IPNTGFVKAVKLMNVAGAYWRGDETRKQLTRIYGVTFPKASELTEYLHMIEEAKKR 241


>gi|258647088|ref|ZP_05734557.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
 gi|260853035|gb|EEX72904.1| threonine--tRNA ligase [Prevotella tannerae ATCC 51259]
          Length = 647

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVN 640
            +  H++ HL+  A+  +        G  I   G  +DV   +   IT A+   IE+ ++
Sbjct: 69  HAFWHTSAHLMAEAMQELWPGTQFGIGPAI-EKGFYYDVMPPEGVTITEADFAKIENKMH 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SAL 693
           +++ +  P+V + +++ DA+          ++    +   +     G  +       + L
Sbjct: 128 ELVQKKEPLVRKSISKTDALN------FFEQHGQHYKNELIADLADGTITTYTQGNYTDL 181

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G H+ +T  I  + +++ SS
Sbjct: 182 CRGPHLLNTAPIKAIKVMAVSS 203


>gi|320534417|ref|ZP_08034899.1| threonyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320133364|gb|EFW25830.1| threonyl-tRNA synthetase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 678

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  +        G  IT DG  +D      +T   L+ IE  +  I+ 
Sbjct: 68  LRHSATHVMAQAVQEMFPGVNLGIGPFIT-DGFYYDFGAIDAVTPEMLREIEKRMKRIVK 126

Query: 645 QNLPVVTRIMN-----REDAIASGAAALLGTKY-NDRVRVVSVEY----------EDGGV 688
           +    V R +       E A       L+ TK        V V             DG V
Sbjct: 127 EGQRFVRRDITEAQGREELADQPYKLELITTKGAGAEGASVEVGAGGLTMYDNVRRDGSV 186

Query: 689 HSSALCGGTHVSSTGEIM-LLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDE 740
             + LC G H+ ST  I     +   SS           ++RI   T    +  L     
Sbjct: 187 AWTDLCRGPHLPSTRLIGQGFALTKSSSAYWKGDQSGDSLQRIYG-TAWATKDELKAYQT 245

Query: 741 KLKSLAS 747
           +L   A 
Sbjct: 246 RLAEAAK 252


>gi|301626888|ref|XP_002942619.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
          Length = 683

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 14/192 (7%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + ++          Q    HS+ H+L  AL          +G              
Sbjct: 141 PLEEDCAVEFLTFDSREGQAIFWHSSAHILGLALEQ-HYEGCLCHGPSTENGYFYDIYLP 199

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVE 682
           +  +  + L  +E    D+I Q LP     + RED +          +   D+V   +  
Sbjct: 200 NSTVLGSHLPDLETVCKDVIKQKLPFQRIEVAREDLLELFKYNKFKIRTIEDKVDTCTTV 259

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT---GQRAR 732
           Y  G +    LC G HV  TG+I  L ++  SS        +  ++R+  I+   G++ +
Sbjct: 260 YRCGSL--VDLCRGPHVRHTGQIRALKLLKNSSSFWRSDPTQEALQRVYGISFPEGKQLK 317

Query: 733 SHLMGQDEKLKS 744
                Q+E +  
Sbjct: 318 EWEKAQEEAINR 329


>gi|218677881|ref|ZP_03525778.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 894]
          Length = 340

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
             +L  IE  + +IIA+N P   +I +RE A    AA   G +Y   +     E +D  +
Sbjct: 3   PDDLPKIEKKMKEIIARNAPFTKQIWSREKAKDVFAAK--GEQYKVELVDAIPEGQDLKI 60

Query: 689 HSS----ALCGGTHVSSTGEIM-LLYIVSESSIRAGIRR 722
           ++      LC G H++STG++     ++    +     R
Sbjct: 61  YNQGEWFDLCRGPHMASTGQVGTAFKLMK---VAGAYWR 96


>gi|169829320|ref|YP_001699478.1| hypothetical protein Bsph_3872 [Lysinibacillus sphaericus C3-41]
 gi|168993808|gb|ACA41348.1| hypothetical protein Bsph_3872 [Lysinibacillus sphaericus C3-41]
          Length = 62

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           GG RP MA +G  + +K D+A+  V  ++K
Sbjct: 31  GGVRPDMAMAGAKDASKLDEALLSVYDYVK 60


>gi|290559864|gb|EFD93187.1| Threonyl/alanyl tRNA synthetase SAD [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 185

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 5/164 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           +  H+A HL   AL         +       D +       + I    +K+ E  VN  I
Sbjct: 8   ARLHTAEHLFARALQDQKLDIHVRKADTYNVDNI-GKAYIKEIIPFENIKTAEITVNQNI 66

Query: 644 AQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           +  L +      N  +A+             D  + + V     G +  + C   HV++T
Sbjct: 67  SVGLEIKEKNFANISEAVKENPKLRFNADRLDGKQTIRVIS--IGDYDFSACKHMHVNNT 124

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
            EI+   +   S +  G   +E + G+ A   ++     L  +A
Sbjct: 125 NEIVAFSVTRVSYLG-GETEVEFLAGENAIRFMINTKNALLDVA 167


>gi|195443008|ref|XP_002069231.1| GK21088 [Drosophila willistoni]
 gi|194165316|gb|EDW80217.1| GK21088 [Drosophila willistoni]
          Length = 699

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 30/258 (11%)

Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSI----VKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           L       E+R V  +K   +    +++     +K  +  G+ V+            + T
Sbjct: 28  LNPWPKYIEERNVFWEKCKAEYQAELAAKTREAIKVTLPDGKQVDATSW--------EST 79

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P          D  C I  G  L    V  K  G       V  G  + +   +L  D  
Sbjct: 80  P---------YDIACVISKG--LADNTVISKVNGEVWDLDRVLEGNCKLQ---LLKFDDP 125

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIED 637
              Q    HS+ H++  A+  + G H+   G  I   G  +D+      I++ +  ++E 
Sbjct: 126 E-AQAVFWHSSAHIMGEAMERLYGGHLCY-GPPID-GGFYYDMHLDGEGISTNDYGAMES 182

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            V  I+ +        M + D +          +  +                  LC G 
Sbjct: 183 LVKQIVKEKQIFERLEMKKSDLLEMFKYNEFKVRILNEKVTSDRTTVYKCGSLIDLCRGP 242

Query: 698 HVSSTGEIMLLYIVSESS 715
           HV +TG++  L I   SS
Sbjct: 243 HVRNTGKVKALKITKNSS 260


>gi|300120854|emb|CBK21096.2| unnamed protein product [Blastocystis hominis]
          Length = 767

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQ 645
           HS+ H+L  A+  + G  +    +    DG  +D    K   S  E K IE   N II +
Sbjct: 205 HSSAHILGEAMENLYGVDLCIGPAL--TDGFYYDAYFGKMTVSEAECKDIEAEANRIIKE 262

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
                   + +  A+         T     +R    +     V+       LC G H+ S
Sbjct: 263 KQRFDRCELTKAQALELFKHNPFKTSI---IRSKVPDGATTTVYRCGSLIDLCMGPHLPS 319

Query: 702 TGEIMLLYIVSESS 715
           T  +    +V  S+
Sbjct: 320 TALVKGFAVVKNSA 333


>gi|255323684|ref|ZP_05364814.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
 gi|255299398|gb|EET78685.1| threonyl-tRNA synthetase [Campylobacter showae RM3277]
          Length = 606

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV---THSKPITSAELKSIEDNVND 641
           I HS  HL+  A+  +        G  +  DG  +D      +  ++  +L +IE  + +
Sbjct: 41  IRHSCAHLMAQAIKELYPQAKFFVGPNV-EDGFYYDFKVDDANSKLSDEDLAAIEAKMKE 99

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           +    L +V     +           L  +   R+    V     G     LC G H+ +
Sbjct: 100 LAEAKLDIVKASSTKAFMSDKFKDDELKQEVLKRIPEGEVSSYKQGNF-EDLCRGPHLPN 158

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T  +    +               + G  A        E +  +       + ++   + 
Sbjct: 159 TKFLKFFKLTR-------------VAG--AYLGGDETREMINRIYGTAFADKESLKEHI- 202

Query: 762 EIWEEYRK 769
            I EE +K
Sbjct: 203 RIIEEAKK 210


>gi|323491636|ref|ZP_08096815.1| putative metal-dependent hydrolase [Vibrio brasiliensis LMG 20546]
 gi|323314212|gb|EGA67297.1| putative metal-dependent hydrolase [Vibrio brasiliensis LMG 20546]
          Length = 288

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 82/253 (32%), Gaps = 63/253 (24%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCA----------------IGD---GIRLQITDV 546
           Q + VV + TPF+  +        D G                   G+   G  + +   
Sbjct: 29  QYLHVVTETTPFHPVSHIWPDHPADKGTLNHFQVVDCQVGAVELASGELYVGETIPVKRD 88

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL----LHHAL----- 597
           Q     + VH    +   +    S+ L++D Q +  LS  HSA HL    L+  L     
Sbjct: 89  QPGWVFVVVHCLPADCCGIELGQSVTLSVDKQYQSALSRGHSAGHLSYLALNKVLTEQGY 148

Query: 598 ------STILGSHVSQNG-----SCITPDGLRFDVTHSKPITS---------AELKSIED 637
                       H   N      S +TPD         K +           A+LK IE 
Sbjct: 149 WRKDADRKDPHGHYDFNSYAQVTSFVTPDKCLDTYRLGKTLRKRGLNSADMLAQLKEIEQ 208

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            VN  +     V    +  E  +     AL  ++Y         + +   + +   CGG+
Sbjct: 209 QVNQQL-----VQWIELGSEVKVECHGDALTDSRY------WQCDLKQSEI-AVIPCGGS 256

Query: 698 HVSSTGEIMLLYI 710
           HV S  E   + +
Sbjct: 257 HVGSLTEYAAIEV 269


>gi|148979936|ref|ZP_01815794.1| threonyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
 gi|145961540|gb|EDK26842.1| threonyl-tRNA synthetase [Vibrionales bacterium SWAT-3]
          Length = 156

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HA+  +        G  I  +G  +D+     +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHAVKQLFPEAKMAIGPTID-NGFYYDIDLEHSLTQEDLEKIEKRMKELAKT 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKY 672
              VV + ++ ++A  +  A   G  Y
Sbjct: 132 KYQVVKKKVSWQEARDAFEAR--GETY 156


>gi|269962405|ref|ZP_06176755.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832901|gb|EEZ87010.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 289

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 88/259 (33%), Gaps = 65/259 (25%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   VV D TPF+  +        D G     G++ ++ D                    
Sbjct: 29  EATHVVTDVTPFHPVSHIWPDHPADKGTLTIKGMKFEVVDCQVGAVELASGELYIGQAIP 88

Query: 546 VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  EG    V H +       T    +L +D + +  LS  HSA H+ + AL+ +L  
Sbjct: 89  VKRDTEGWAFVVVHVLPFTDTFDTGDIALLEVDKEYQLSLSRGHSAGHIAYLALNKVLAQ 148

Query: 604 HVS-------------------QNGSCITPDGLRFDVTHSKPITS---------AELKSI 635
           +                     Q  S +TPD         K +           ++LKSI
Sbjct: 149 NYWRKDADRKDPHGNYDFNSYAQETSFVTPDKCLDTYRLGKTLRKRGLNSADMLSDLKSI 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN ++          + R+ AI        G    D  R    +  +G + +   CG
Sbjct: 209 EQQVNVLLGD-------WLKRDVAITVDC---HGEHLTD-SRYWQCDLGEGEI-AVIPCG 256

Query: 696 GTHVSSTGEIMLLYIVSES 714
           GTH S   +   +++    
Sbjct: 257 GTHASHLSDFDSIHVTLVE 275


>gi|303277979|ref|XP_003058283.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460940|gb|EEH58234.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 725

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 18/155 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  AL    G+ ++   S    +G  +D     K ++  E   I+  +  II
Sbjct: 128 YWHSSAHVLGEALELEYGADLTIGPSI--EEGFYYDCYLGDKTLSDHERTQIQKRMEGII 185

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +  P     ++R++A+               +     E      +       LC G H+
Sbjct: 186 KEKQPFQRIEVSRDEALEMFLENKFKV----ELITNLPEDATISCYRCGPMVDLCRGPHL 241

Query: 700 SSTGEIMLLYI--VSESSIRAGIR-----RIEAIT 727
             T  I  + +   S S  RA +      R+ A+T
Sbjct: 242 PDTAWIKAVTVNQCSRSHWRADVTKDPLVRVYAVT 276


>gi|120434969|ref|YP_860655.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
 gi|117577119|emb|CAL65588.1| threonyl-tRNA synthetase [Gramella forsetii KT0803]
          Length = 667

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 16/204 (7%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I +G+   +   +   E        V   +      ++ T  + N   
Sbjct: 32  EKGTTPMDVAKSISEGLARNVISAKFNNE-----TVEVSTPLNTDGDLVLFT--WSNDEG 84

Query: 583 L-SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVN 640
             +  HS +H++  A+  +        G  I   G  +DV   +  I+  + K IED + 
Sbjct: 85  KKAFWHSTSHVMAQAIQDLFPGAKLTIGPAIER-GFYYDVDFGEQKISDNDFKRIEDRML 143

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
           +I         R  +++DA+            +  + ++   + + D    +  LC G H
Sbjct: 144 EIARGKHDFQLREASKDDALNFYKKENNQFKVELIENLQDGEITFCDHDTFTD-LCRGGH 202

Query: 699 VSSTGEIMLLYIVSESSIRAGIRR 722
           + +     ++  V   S+     R
Sbjct: 203 IPN---TGIIKAVKLMSVAGAYWR 223


>gi|330723715|gb|AEC46085.1| threonyl-tRNA synthetase [Mycoplasma hyorhinis MCLD]
          Length = 581

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 9/189 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            +NHSA+HLL  A+  +        G   T +G  +D     P++  +L  IE  +  + 
Sbjct: 7   ELNHSASHLLALAVIKLFPDVQLGFGPA-TDEGFYYDFKFVNPLSEHDLIKIEKMMQKLA 65

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCGGTHV 699
             N  +   +  + D         L  K+    R +     V           LC G H+
Sbjct: 66  NNNFVMKQTLGTQIDFSKQIFKKELLDKFTSENRKITFFSIVNPTKNEYLFEDLCAGGHI 125

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +  +I    ++S   I     R +    Q  R +    D K + L  FL + Q      
Sbjct: 126 ENMKQIKHFKLLS---IAGAYWRGKVENEQLTRIYGTAWDTK-EELEEFLHILQERKERD 181

Query: 760 VEEIWEEYR 768
             ++ +E +
Sbjct: 182 HRKLGKELK 190


>gi|209694323|ref|YP_002262251.1| hypothetical protein VSAL_I0734 [Aliivibrio salmonicida LFI1238]
 gi|208008274|emb|CAQ78419.1| hypothetical protein VSAL_I0734 [Aliivibrio salmonicida LFI1238]
          Length = 291

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/266 (19%), Positives = 92/266 (34%), Gaps = 71/266 (26%)

Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITDV---------- 546
           +++++   GQ   +V  +TPF+  +        D G          +             
Sbjct: 23  QLIKKTEQGQ--WLVVKETPFHPVSHIWPDHPEDKGTISTRSNEYPVLACHTAAIELSTG 80

Query: 547 ----------QKKAEGIFVHHAIVERGILRT--EMSLVLTIDYQNRRQLSINHSATHL-- 592
                     ++  EG     A +    +      S+ LT+D ++++ LS  HSA H+  
Sbjct: 81  TLYTNKEIPIKRGEEGWVFVVAHLVESAVPVSLGDSIELTVDEEHQKALSRGHSAGHIAY 140

Query: 593 --LHHALSTILG----------SHVSQN-----GSCITPDGLRFDVTHSKPITS------ 629
             L+ AL                H + N      S +T D         K +        
Sbjct: 141 LALNKALHAKYWRKDADRKDELGHYNFNNYAQVTSFVTEDNCEDIYRLGKTLRKRGLNSV 200

Query: 630 ---AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
               +L +IE  +N  I + L + +++     ++     AL  ++Y            D 
Sbjct: 201 EMLDDLSAIEHQINQQIKEWLSLGSKV-----SMKCDGKALTDSRY---------WIADF 246

Query: 687 GVHSSA--LCGGTHVSSTGEIMLLYI 710
           G+  SA   CGGTHV+S  E   + +
Sbjct: 247 GIDGSAKLPCGGTHVASFDEYQEIKV 272


>gi|147774128|emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
          Length = 1442

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243
            +     VF+QF+++       LP   ++ G G ER+ ++LQ K N 
Sbjct: 5   VLRYGTFVFIQFDRERDGSLKSLPAKHVNAGTGFERLTSILQGKINV 51


>gi|254285482|ref|ZP_04960446.1| Alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
 gi|150424344|gb|EDN16281.1| Alanyl-tRNA synthetase [Vibrio cholerae AM-19226]
          Length = 291

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 81/259 (31%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 33  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNDIPVKRE 92

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 93  ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 152

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 153 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 212

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH     ++   
Sbjct: 213 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCK---DLTAF 267

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 268 QSIQVTLKQVDEQHIEAVT 286


>gi|329945633|ref|ZP_08293366.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528636|gb|EGF55601.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 683

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 65/187 (34%), Gaps = 26/187 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HSATH++  A+  +        G  IT DG  +D      +T   L+ IE  +  I+ 
Sbjct: 73  LRHSATHVMAQAVQEMFPQVNLGIGPFIT-DGFYYDFGAIDAVTPEMLREIEKRMKHIVK 131

Query: 645 QNLPVVTRIMN-----REDAIASGAAALLGTKY-NDRVRVVSVEY----------EDGGV 688
           +    V R +       E A       L+ TK        V V             DG V
Sbjct: 132 EGQRFVRRDITEAQGREELADQPYKLELITTKGAGAEGASVEVGAGGLTMYDNVRRDGSV 191

Query: 689 HSSALCGGTHVSSTGEIM-LLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDE 740
             + LC G H+ ST  I     +   SS           ++RI   T   ++  L     
Sbjct: 192 AWTDLCRGPHLPSTRLIGQGFALTKSSSAYWKGDQSGDSLQRIYG-TAWASKDDLKAYQT 250

Query: 741 KLKSLAS 747
           +L   A 
Sbjct: 251 RLAEAAK 257


>gi|224099691|ref|XP_002311580.1| predicted protein [Populus trichocarpa]
 gi|222851400|gb|EEE88947.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 11/165 (6%)

Query: 558 AIVERGILRTEMSLVLTI-----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612
            ++       E    L I     D       +  HS+ H+L  AL    G  +       
Sbjct: 85  GVLWDMNRPLEDDCELKIFNFESDEGRD---TFWHSSAHILGQALEMEYGCKLCIGPCTT 141

Query: 613 TPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-T 670
             +G  +D  + +  +     K I+      +A+  P     ++RE A+   +       
Sbjct: 142 RGEGFYYDAFYGELGLNDDHFKKIDAAALKAVAEKQPFERIEVSREQALEMFSDNNFKVE 201

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
              D     ++     G     LC G H+ +T  +  L  +  SS
Sbjct: 202 IIKDLPADKTITVYRCGP-LVDLCRGPHIPNTSFVKALACLKASS 245


>gi|91215264|ref|ZP_01252236.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186869|gb|EAS73240.1| threonyl-tRNA synthetase [Psychroflexus torquis ATCC 700755]
          Length = 648

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 8/172 (4%)

Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613
           F  + +     L  + +LVL     +  + +  HS  HLL  A++ +        G  I 
Sbjct: 40  FNDNVVETITPLEEDGNLVLLTFKDDDGKQAFWHSTAHLLAQAITKLYPGVNLTIGPSID 99

Query: 614 PDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--LLGT 670
             G  +DV  +    S  +   IE  + ++           +++ +A+            
Sbjct: 100 -KGFYYDVDPNGQSISENDFPEIEKKMLELARGKHDFQMHPVSKTEALEYYKTKNNPYKV 158

Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +  + +    + + D    +  LC G H+ +      +  V   +I     R
Sbjct: 159 ELIENLTDGEITFCDHDDFTD-LCRGGHIPN---TGFIKAVKLMNIAGAYWR 206


>gi|223039114|ref|ZP_03609404.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
 gi|222879475|gb|EEF14566.1| threonyl-tRNA synthetase [Campylobacter rectus RM3267]
          Length = 606

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIEDNVND 641
           I HS  HL+  A+  +        G  +  DG  +D    +    ++  +L++IE  + +
Sbjct: 41  IRHSCAHLMAQAIKELYPQAKFFVGPNV-EDGFYYDFKVDEANSKLSDEDLEAIEAKMKE 99

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           +      ++     +           L  +   R+    V     G     LC G H+ +
Sbjct: 100 LAEAKQDILKASSTKAFMSDKFKDDELKQEVLKRIPEGEVSSYKQGNF-EDLCRGPHLPN 158

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           T  +    +               + G  A        E +  +       + ++   + 
Sbjct: 159 TKFLRFFKLTR-------------VAG--AYLGGDETREMINRIYGTAFADKESLKEHI- 202

Query: 762 EIWEEYRK 769
            I EE +K
Sbjct: 203 RIIEEAKK 210


>gi|325523388|gb|EGD01722.1| threonyl/alanyl tRNA synthetase SAD [Burkholderia sp. TJI49]
          Length = 82

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
            L     +V TID+  R +    H+A HL+   L          +G  +T D +R  
Sbjct: 32  TLAPGARVVATIDWTRRYRHMRLHTAAHLMCAVLP------YPVDGCSVTADYVRLP 82


>gi|256372009|ref|YP_003109833.1| threonyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008593|gb|ACU54160.1| threonyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 623

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 24/200 (12%)

Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-- 624
              +LV     + R+ L   HS  H++  A+S +        G   T +G  +DV     
Sbjct: 28  PGATLVAASTPEGRQVLR--HSGAHVVAKAISRLWPGTHLAVGPA-TEEGFFYDVELPGG 84

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + +   +L +I   V  I+A + P     +  ++A    A      +  DR+     E +
Sbjct: 85  RSLDDDDLAAIAAEVERIVAADEPFERIELELDEARRQLADQPFKLEILDRIAAGEAETD 144

Query: 685 DG----------GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR------RIEAITG 728
                       G     LC G HV STG +  L ++  S   A  R      R++ + G
Sbjct: 145 AASGSAVSIYRTGADFIDLCRGPHVPSTGHLSALRLLRVSG--AYWRGDEHGPRLQRVAG 202

Query: 729 QRARSHLMGQDEKLKSLASF 748
             A       +  L  +A  
Sbjct: 203 T-AFESPEALEAWLTQIAEA 221


>gi|146303190|ref|YP_001190506.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
 gi|145701440|gb|ABP94582.1| Ala-tRNA(Pro) hydrolase [Metallosphaera sedula DSM 5348]
          Length = 144

 Score = 53.2 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
              H+A H++  AL ++L + ++ + + +     R  V   +  T  E+++I    N I+
Sbjct: 1   MRTHTALHVVKGALQSVLNTKITYS-TYVKESHGRISVIMDRKPTDLEMENIIREANRIV 59

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            + LP++  ++ R +A       +        +   +V V+     ++    C   H  +
Sbjct: 60  NEGLPILREVVPRNEAEKIYGNDIYDYFPVPPEVKELVIVKIPGWNIN---ACAKDHTQT 116

Query: 702 TGEIMLLYI 710
           T EI ++ +
Sbjct: 117 TKEIGVIRL 125


>gi|297745763|emb|CBI15819.3| unnamed protein product [Vitis vinifera]
          Length = 84

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 274 VIVDHLRSSSFLIADGIL--PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330
           +  D+    +F I D ++   +NE   YVLRRI+RRA+ Y   +L   E     L+  + 
Sbjct: 14  IYADYFLIINF-IHDYLIYFVSNEDCEYVLRRILRRAVNYGSEVLKAQEGFFNSLVNIVV 72

Query: 331 TEMGSAYPELIQ 342
             MG  +P+L Q
Sbjct: 73  KVMGDVFPKLKQ 84


>gi|269219392|ref|ZP_06163246.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211185|gb|EEZ77525.1| threonine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 709

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 567 TEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625
            E ++V  +D  +   L+ + HS  H+L  A+  +        G  IT DG  +D  +  
Sbjct: 50  PEGAVVEGVDVSSDDGLNILRHSTAHVLAQAVQQVFPDANLGIGPFIT-DGFYYDFGNID 108

Query: 626 PITSAELKSIEDNVNDIIAQN-----LPVVTRIMNREDAIASGAAALLGTKY-NDRVRVV 679
            +T   L+ +E  +  I+ +        +       E A       L+GTK        V
Sbjct: 109 AVTPELLRDLEKRMKRIVKEGQTFRRREIADADAAAELAGQPYKLELVGTKGAGAEGASV 168

Query: 680 SVEY----------EDGGVHSSALCGGTHVSSTGEIM-LLYIVSESSI-----RAGIR-- 721
            V             DG V  + LC G H+ ST  I     +   S+      +AG R  
Sbjct: 169 EVGGAALTMYDNCSRDGSVVWTDLCRGPHLPSTRFIGNGFALTKASAAYWKGDQAGDRLQ 228

Query: 722 RIEAITGQRARSHLMGQDEKLKSL 745
           RI   T    +  L    +++   
Sbjct: 229 RIYG-TAWPTKDELAAYQKRIAEA 251


>gi|227829481|ref|YP_002831260.1| hypothetical protein LS215_0499 [Sulfolobus islandicus L.S.2.15]
 gi|227455928|gb|ACP34615.1| conserved hypothetical protein [Sulfolobus islandicus L.S.2.15]
          Length = 150

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A  ++  A+  +LG+      + +  +  R  V   +  +  E+  + +  N+ + 
Sbjct: 7   RTHTALLVVKGAVRKVLGAK-WTASTYVNSNHGRLTVKFERKPSDQEMDKVFELANEKVR 65

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +NLP++  ++ RE+A       +      +  VR +S+        S   C   H   T 
Sbjct: 66  KNLPIIIEVLPREEAERKYGDEIYDLFLISAEVRELSIVV--IPDWSINACNKQHTKFTS 123

Query: 704 EIMLL 708
           EI  +
Sbjct: 124 EIGEI 128


>gi|212550461|ref|YP_002308778.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|229470721|sp|B6YQ95|SYT_AZOPC RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|212548699|dbj|BAG83367.1| threonyl-tRNA synthetase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 648

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 24/205 (11%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +    S+ L        + +  HS+ HLL  +L  +  +     G  I  +G  +DV  
Sbjct: 50  PINENASVKLYKWEDFEGKRTFWHSSAHLLAESLQELYPNIHFGMGPAI-ENGFYYDVDL 108

Query: 624 SKP--ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                I   +L +IE  + ++ ++ L +  + + +++A+        G  Y   + +  +
Sbjct: 109 GDGVVIKDVDLVTIEKKMQELASKKLSISRQNVTKQNALELFGKK--GETYKIEL-ISKL 165

Query: 682 EYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQR 730
           E     V++      LC G H+ +T  I  + + S +         R  + RI  I+   
Sbjct: 166 EDGKITVYTQGNFTDLCRGPHLPNTSYIKAIKLTSVARAYWKGDESRKQLTRIYGIS--- 222

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGN 755
                  ++E  + LA   K  + +
Sbjct: 223 ----FPKKEELSEYLALMEKAKKRD 243


>gi|290980243|ref|XP_002672842.1| predicted protein [Naegleria gruberi]
 gi|284086421|gb|EFC40098.1| predicted protein [Naegleria gruberi]
          Length = 720

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 11/140 (7%)

Query: 587 HSATHLLHHALSTILG---------SHVSQNGSCITPDGLRFD--VTHSKPITSAELKSI 635
           HS  H+L  AL    G           VS+  S +   G  ++  + +++ IT+ +L+ +
Sbjct: 135 HSTAHILGCALEQKFGSSLKLCDGPPLVSKEASQVLNGGFFYEGFLENNERITTEQLEEL 194

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  +  ++ +        + +E A              +++            +   LC 
Sbjct: 195 EKFMQQVVKEKHSFQKIHITKELAREIFKYNQFKLDIIEKIPSGEPITMYKCGNLVDLCR 254

Query: 696 GTHVSSTGEIMLLYIVSESS 715
           G H+ +T  I  + +   S 
Sbjct: 255 GPHIPNTSMIKAVKLTKLSG 274


>gi|316976611|gb|EFV59868.1| threonyl-tRNA synthetase, cytoplasmic [Trichinella spiralis]
          Length = 1190

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  H+L  A   + G  +         +G  +D     + +T+ ++  +   +   I  
Sbjct: 128 HSTAHVLGEAAERLFGCCLCYGPPI--ENGFYYDMFMDDRTVTAEDMDKLAKIMKAAIDG 185

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     + +E+ +          +  +                  LC G HV  TG +
Sbjct: 186 KQPFERLELKKEELMEMFKYNPFKLRILENKVKTPTTTAYRCGPLIDLCRGPHVRHTGLL 245

Query: 706 MLLYIVSESS 715
               I   SS
Sbjct: 246 NSFKITKNSS 255


>gi|195472319|ref|XP_002088448.1| Aats-thr [Drosophila yakuba]
 gi|194174549|gb|EDW88160.1| Aats-thr [Drosophila yakuba]
          Length = 747

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+   G  I  +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 181 HSSAHIMGEAMERIYGGHLCY-GPPID-NGFYYDMHLDGEGISTNDYGAMEGLVKQIVKE 238

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 239 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 298

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 299 KALKITKNSS 308


>gi|225013012|ref|ZP_03703428.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
 gi|225002828|gb|EEG40808.1| threonyl-tRNA synthetase [Flavobacteria bacterium MS024-2A]
          Length = 648

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 36/268 (13%)

Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580
           Y+E G    +   +I +G+   +     K  G  V         L     + L       
Sbjct: 14  YSE-GVTPFEIASSISEGLARNVLSA--KFNGQIVESVT----SLHENGKIQLFTWNDQE 66

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNV 639
            + +  HS+ H+L  AL  +        G  I  +G  +D    +   +  +L  IE   
Sbjct: 67  GKTAFWHSSAHVLAQALLALYPECKLTIGPAI-ENGFYYDADFGEYSLTEKDLVEIEKKF 125

Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697
            +   Q      R  ++ +A+A          T+  + +   ++ + D    +  LC G 
Sbjct: 126 LEFARQKFEFKMRSASKAEALAYYKKENNPFKTELIENLEDGTITFCDHADFTD-LCRGG 184

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK----LKSLASFLKVSQ 753
           H+ +      +  +  ++I     R     G   +  L           K L  +L    
Sbjct: 185 HIPN---TGSIKAIKLTNIAGAYWR-----GDETKPQLTRVYGISFPKQKQLTEYL---- 232

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                   E+ EE +K       ++L+L
Sbjct: 233 --------ELVEEAKKRDHRKLGKELEL 252


>gi|149238003|ref|XP_001524878.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451475|gb|EDK45731.1| threonyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 754

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIEDNVNDII 643
           HS+ H+L  +     G H+S      T DG  +D++ +     +T  +  S+E      I
Sbjct: 176 HSSVHILGESCECHYGCHLSHGPP--TDDGFFYDMSINDGTTFVTQEDYPSLETIATKAI 233

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +        M +ED +   A      K+   +     +     V+       LC G H+
Sbjct: 234 KEKQTFERLEMTKEDLLKMFAYNKYKVKF---ISDKIPDGTSSTVYRCGPLIDLCAGPHI 290

Query: 700 SSTGEIMLLYIVSESS 715
             +G+I    ++  SS
Sbjct: 291 PHSGKIKAFKVLKNSS 306


>gi|321465111|gb|EFX76114.1| hypothetical protein DAPPUDRAFT_249385 [Daphnia pulex]
          Length = 164

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 36/186 (19%)

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
           S  +T A+L + E   N+ I + + V   +              L   Y   V V+++  
Sbjct: 3   STSVTDAQLITFESQANEKIREAVSVEVEV----------RYRGLPDGYVGPVHVITI-- 50

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
              GV S+  C GTHVS+   + L                   T +   +HL+  +    
Sbjct: 51  --LGVDSNMRC-GTHVSNPSHLQLF-----------------YTKKDYINHLLESE---S 87

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803
            L   LK    ++V     +    +  Q        +     +      D ++ S +ISE
Sbjct: 88  QLTKILKNGPEDLVDLANNLQASVKLSQKEETNINEKSKFAIIHSKD-GDTDYASVLISE 146

Query: 804 VDSKEL 809
           +D +EL
Sbjct: 147 MDFEEL 152


>gi|269103269|ref|ZP_06155966.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163167|gb|EEZ41663.1| predicted metal-dependent hydrolase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 290

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 77/249 (30%), Gaps = 65/249 (26%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           +   +V D TPF+  +        D G          + +                    
Sbjct: 28  EGTWIVTDTTPFHPVSHIWPDHPADRGFITVANQDYAVINCLVGAVELASQTLYVADAIP 87

Query: 546 VQKKAEGIF--VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++  EG    V H + +  +L     + L++D   ++ L   HS  HL   AL+ +L  
Sbjct: 88  VRRDTEGWVFVVVHHLAQDLMLEIGQEVELSVDKAYQQALGRGHSGGHLSSLALNKVLHH 147

Query: 604 HVS-------------------QNGSCITPDGLRFDVTHSKPITS---------AELKSI 635
                                 Q  S ++ D  R      K +            +L  I
Sbjct: 148 DFWRKDASRKDELGHYDFHSYAQEKSEVSEDCSRDTYRLGKTLRKRGLNSADMLEQLNDI 207

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
            D +N  + Q L + + I  R +  A               R    + ++G V     CG
Sbjct: 208 ADKINQQLTQWLELESAITMRCEGQALTD-----------SRYWCCDLKEGNVIEI-PCG 255

Query: 696 GTHVSSTGE 704
           GTH  S  E
Sbjct: 256 GTHSQSLAE 264


>gi|110598676|ref|ZP_01386941.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
 gi|110339729|gb|EAT58239.1| threonyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031]
          Length = 657

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 24/176 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++HL+  A+  +        G  I   G  +D+         +L+ IE  + +I  ++
Sbjct: 82  HSSSHLMAQAIEELFAGSRFGAGPSI-EQGFYYDIASEHRFREEDLRLIEQKMLEISKRD 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---------ALCGGT 697
             +    + R  AI          K ND  +V  +E     V +           LC G 
Sbjct: 141 SKIQREELTRSAAIE-----FFKNKRNDPYKVEILEETLKDVDTVSLYHQDGFTDLCTGP 195

Query: 698 HVSSTGEIMLLYIVSES-------SIRAGIRRIEAIT--GQRARSHLMGQDEKLKS 744
           H+ +T ++  + + + S       S R  ++RI  IT    +     +   E+ K 
Sbjct: 196 HLPTTSKVKAVLLTNISSSYWRGDSSREQMQRIYGITFPSDKQLKEYVTLLEEAKR 251


>gi|294948976|ref|XP_002785990.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239900098|gb|EER17786.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  AL    G +++        +G  +D    +  +   + + IE  +  I+ +
Sbjct: 179 HSSAHILGEALEQEYGCYLTIGPPL--ENGFYYDGFYGNHKLGPNDYEKIEKRIASIVKE 236

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTH 698
           +      ++ +E+A+   A          +++++S +  DG + S         LC G H
Sbjct: 237 DQKFQRLVVTKEEALELFAYNPF------KLQLISTKVPDGSLTSVYRIGSLVDLCRGPH 290

Query: 699 VSSTGEIMLLYIVSES 714
           +  TG     ++   S
Sbjct: 291 LPRTGVAKAFWVNKNS 306


>gi|149276293|ref|ZP_01882437.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
 gi|149232813|gb|EDM38188.1| threonine--tRNA ligase (threonine tRNA synthetase) [Pedobacter sp.
           BAL39]
          Length = 641

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 23/175 (13%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H++  AL  +        G  I   G  +DV    +  +S + K+IE  + ++  Q
Sbjct: 73  HSSAHIMAEALEALYPGTKFGIGPAIET-GFYYDVDFGDREFSSDDFKAIETKILELAKQ 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV------HSSALCGGTHV 699
                 + +++ DAI          K ++    +    EDG +        + LC G H+
Sbjct: 132 KEVFERKDISKADAIQY-----FTEKGDEYKLDLLEGLEDGKITFYSQGEFTDLCRGPHI 186

Query: 700 SSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRAR---SHLMGQDEKLKS 744
            +TG +  + +++ +         R  + RI  +T  +A     +L   +E  K 
Sbjct: 187 PNTGFVKAVKLMNVAGAYWRGDETRKQLTRIYGVTFPKASELTEYLHMIEEAKKR 241


>gi|262165076|ref|ZP_06032813.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223]
 gi|262024792|gb|EEY43460.1| predicted metal-dependent hydrolase [Vibrio mimicus VM223]
          Length = 289

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 83/261 (31%), Gaps = 49/261 (18%)

Query: 511 VEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQ 547
           V+VV  +TPF+  +        D G  I  G    +TD                    V+
Sbjct: 31  VDVVTYKTPFHPVSHIWPDHPADRGVLIWQGCEYPVTDCLVGAVEQASGHLYVGNDIPVK 90

Query: 548 KKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +   G   + VH       + +   S+ L ID Q +  L   HSA HL + AL+ +L   
Sbjct: 91  RDESGWVFVVVHRLSEVTTLFQVGDSVQLMIDEQYQVSLGRGHSAGHLAYLALNKVLAQS 150

Query: 605 VSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +  +        FD            P  S +L  +   +      +  V+  +   E
Sbjct: 151 YWRKDADRKDPHGYFDFNSYAQISSFVTPNCSTDLYRLGKTLRKRGLNSDDVLRDLDLIE 210

Query: 658 DAIASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
                     L           G    D    V   +E   V +   CGGTH +      
Sbjct: 211 QNTNQQLVQWLALASPIQLECEGLALTDSRYWVCDLHE--SVKARIPCGGTHANGLD--- 265

Query: 707 LLYIVSESSIRAGIRRIEAIT 727
               +  +  +   + IEA+T
Sbjct: 266 AFRAIHVTLKQVDEQHIEAVT 286


>gi|294901580|ref|XP_002777422.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239885058|gb|EER09238.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 836

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  AL    G +++        +G  +D    +  +   + + IE  +  I+ +
Sbjct: 179 HSSAHILGEALEQEYGCYLTIGPPL--ENGFYYDGFYGNHKLGPNDYEKIEKRIASIVKE 236

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTH 698
           +      ++ +E+A+   A          +++++S +  DG + S         LC G H
Sbjct: 237 DQKFQRLVVTKEEALELFAYNPF------KLQLISTKVPDGSLTSVYRIGSLVDLCRGPH 290

Query: 699 VSSTGEIMLLYIVSES 714
           +  TG     ++   S
Sbjct: 291 LPRTGVAKAFWVNKNS 306


>gi|302816173|ref|XP_002989766.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
 gi|300142543|gb|EFJ09243.1| hypothetical protein SELMODRAFT_447798 [Selaginella moellendorffii]
          Length = 564

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD--VTH 623
           +    ++   D Q R   +  HS+ H+L  +L    G  +         +G  +D     
Sbjct: 11  KAADYVIAQ-DEQGRD--TFWHSSAHILGESLEQAYGCKLCIGPCTTRGEGFYYDAFYED 67

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVE 682
            + +      +++  V   + ++ P     + R+ A+   +         ND      + 
Sbjct: 68  GRTLNEENFPAVQSQVTKAVQESQPFERIQVTRQQALEIFSDNQFKVEIINDLPEDAVIT 127

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712
               G     LC G H+ +T  +     + 
Sbjct: 128 VYRCGP-LVDLCRGPHIPNTSYVKAFSCLK 156


>gi|302820128|ref|XP_002991732.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
 gi|300140413|gb|EFJ07136.1| hypothetical protein SELMODRAFT_134156 [Selaginella moellendorffii]
          Length = 647

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 523 EAGGQLGDTGCAIGDGIR-------------LQITDVQKKAEGIFVHH-AIVERGILRTE 568
           E GGQ  D        +               ++   +K A+ +       +       E
Sbjct: 27  ELGGQPIDVTVLKDGEVVYPGRRLLTTPLDIARLISKKKAADYVIAQVNGTLWDMGRPLE 86

Query: 569 MSLVLTI----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD--VT 622
               L +    D Q R   +  HS+ H+L  +L    G  +         +G  +D    
Sbjct: 87  EDCTLVLYAFKDEQGRD--TFWHSSAHILGESLEQAYGCKLCIGPCTTRGEGFYYDAFYE 144

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSV 681
             + +      +++  V   + ++ P     + R+ A+   +         ND      +
Sbjct: 145 DGRTLNEENFPAVQSQVTKAVQESQPFERIQVTRQQALEIFSDNQFKVEIINDLPEDAVI 204

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                G     LC G H+ +T  +     +  S+
Sbjct: 205 TVYRCGP-LVDLCRGPHIPNTSYVKAFSCLKASA 237


>gi|289620774|emb|CBI52508.1| unnamed protein product [Sordaria macrospora]
          Length = 792

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +   G  +  +G  +++       + S++   +E+ V  I+ 
Sbjct: 152 HSSAHVLGEACERRFGCSLCI-GPPVD-NGFYYEMALPGGAAVQSSDWAPLENIVTKIVK 209

Query: 645 QNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +  P     M++ED +   A       ++  K  D  R     Y +G +    LC G HV
Sbjct: 210 EKQPFQRLEMSKEDLLKMFAYNPYKQHIIKDKIPDGTRTTV--YRNGPLID--LCRGPHV 265

Query: 700 SSTGEIMLLYIVSESS 715
             T  I    I+  SS
Sbjct: 266 PDTSRIEAFAIMKNSS 281


>gi|302816171|ref|XP_002989765.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
 gi|300142542|gb|EFJ09242.1| hypothetical protein SELMODRAFT_130418 [Selaginella moellendorffii]
          Length = 647

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD--VTHSKPITSAELK 633
           D Q R   +  HS+ H+L  +L    G  +         +G  +D      + +      
Sbjct: 98  DEQGRD--TFWHSSAHILGESLEQAYGCKLCIGPCTTRGEGFYYDAFYEDGRTLNEENFP 155

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSA 692
           +++  V   + ++ P     + R+ A+   +         ND      +     G     
Sbjct: 156 AVQSQVTKAVQESQPFERIQVTRQQALEIFSDNQFKVEIINDLPEDAVITVYRCGP-LVD 214

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G H+ +T  +     +  S+
Sbjct: 215 LCRGPHIPNTSYVKAFSCLKASA 237


>gi|150865919|ref|XP_001385328.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
 gi|149387175|gb|ABN67299.2| threonyl-tRNA synthetase [Scheffersomyces stipitis CBS 6054]
          Length = 730

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK---PITSAELKSIEDNVNDII 643
           HS+ H+L  A     GSH+S      T DG  +D++ +     ++ ++  ++E      I
Sbjct: 151 HSSAHILGEACECHYGSHLSHGPP--TEDGFFYDMSINGGETSVSQSDFSNLEQVATKAI 208

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +        M++ED +          K+   +     +     V+       LC G H+
Sbjct: 209 KEKQKFERLEMSKEDLLKMFHYNKYKVKF---ISDKIPDGTSTTVYRCGPLIDLCVGPHI 265

Query: 700 SSTGEIMLLYIVSESS 715
             +G I    ++  SS
Sbjct: 266 PHSGRIKAFKVLKNSS 281


>gi|255710799|ref|XP_002551683.1| KLTH0A05192p [Lachancea thermotolerans]
 gi|238933060|emb|CAR21241.1| KLTH0A05192p [Lachancea thermotolerans]
          Length = 740

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 34/173 (19%)

Query: 566 RTEMSLVLTI-----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620
           +    + L       D   R      HS+ H+L  A    LG+H+       T DG  ++
Sbjct: 133 KEGDEVKLEFFDFDSDEGKRV---FWHSSAHVLGEACECNLGAHICLGPP--TEDGFFYE 187

Query: 621 VT-----------HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
                          + ++  +  ++E    ++I +       +M++ED +     +   
Sbjct: 188 FAVKNAPNAPADAPERTVSQNDFPALESVSKNVIKEKQKFERLVMSKEDLLKMFHYSKF- 246

Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCG-------GTHVSSTGEIMLLYIVSESS 715
                +  +VS +  DGG  +   CG       G H+  TG I    ++  SS
Sbjct: 247 -----KTYLVSTKVPDGGSTTVYRCGKLIDLCVGPHIPHTGRIKAFKLLKNSS 294


>gi|124504241|gb|AAI28176.1| AARS2 protein [Homo sapiens]
          Length = 171

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 755 NVVGRVEEIWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810
            ++  V+ +        RKLQ+  A +K Q  +E     + +    +   +S      L 
Sbjct: 29  ELLATVKMLQRRANTAIRKLQMGQAAKKTQELLE-----RHSKGPLIVDTVSAESLSVLV 83

Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870
            V+  L ++  S  ++L+      K      V +  +  F A   A      +GG   G 
Sbjct: 84  KVVRQLCEQAPSTSVLLLSPQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGS 143

Query: 871 RPHMAQSGGPNGNKADQAIAGVASF 895
           R  +AQ  G   +  + A++   ++
Sbjct: 144 R-VVAQGTGSTTD-LEAALSIAQTY 166


>gi|328955410|ref|YP_004372743.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
 gi|328455734|gb|AEB06928.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Coriobacterium
           glomerans PW2]
          Length = 643

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 20/214 (9%)

Query: 564 ILRTEMSLVLTIDYQNRRQLS-INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L     + +  +      L+ + HSA H+L  A++ + G  V   G  I  DG  +D+ 
Sbjct: 53  PLACGDEVEILTNRSGADALAVLRHSAAHILAAAMAHLYGDVVFGTGPAI-EDGFYYDMR 111

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVS 680
             + I+  +  +IE  +  I+A +LP V   +  ++A    A   L  +          +
Sbjct: 112 LPRSISPDDFSTIEAEMKKIVAADLPFVREEVGYDEARRLLADQPLKLELIAEHEANGDA 171

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740
           +     G     LC G H+SSTG +    +               + G  A       +E
Sbjct: 172 LTIYRVGDFID-LCAGPHLSSTGMLKAFSLTK-------------LAG--AYWRANADNE 215

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            L  L      S+ ++   +  + E  ++     
Sbjct: 216 MLTRLYGTAFFSKRDLEEHLFRLEEAAKRDHKKL 249


>gi|62390552|ref|YP_225954.1| threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|41325890|emb|CAF20053.1| THREONYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032]
          Length = 700

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 34/173 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  +G  +D   ++P T  +LK+IE  +  II 
Sbjct: 90  IRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDAAEPFTPEDLKTIEKRMKKIIK 148

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVSV 681
                  R+        + A  L    Y                        +     +V
Sbjct: 149 TGQKFERRVYES---AEAAAEELKNEPYKLELIQDKGNVDPNSDEATEVGAGELTAYDNV 205

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 V  S LC G H+ +T  I    +   S+         AG++RI    
Sbjct: 206 NPRTSEVEWSDLCRGPHIPTTRYIPAFALTRSSAAYWRGDQDNAGLQRIYGTA 258


>gi|319954103|ref|YP_004165370.1| ser-tRNA(thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
 gi|319422763|gb|ADV49872.1| Ser-tRNA(Thr) hydrolase ;threonyl-tRNA synthetase [Cellulophaga
           algicola DSM 14237]
          Length = 646

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 76/203 (37%), Gaps = 14/203 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G    D   +I +G    +   +     + V   ++E G L     ++ + +    ++
Sbjct: 15  EKGSTPMDVAKSISEGFARNVISAKFNDTVLEVTTPLLEDGSL-----VLYSWNDAAGKK 69

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVND 641
            +  HS++H++  A+  +        G  I  +G  +D+      I+  +  +IE    +
Sbjct: 70  -AFWHSSSHVVAQAIEELYPGVKLTIGPAID-NGFYYDIDLGDTSISDKDFPAIEKKAIE 127

Query: 642 IIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           I           +++  A+            +  + +   ++ + D    +  LC G H+
Sbjct: 128 IARGKHNFKMHPVSKAAALQKYKEQGNEYKVELIENLEDGTITFCDHDTFTD-LCRGGHI 186

Query: 700 SSTGEIMLLYIVSESSIRAGIRR 722
            +TG I  + I+S   +     R
Sbjct: 187 PNTGIIKAIKILS---VAGAYWR 206


>gi|312132188|ref|YP_003999528.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
 gi|311908734|gb|ADQ19175.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Leadbetterella
           byssophila DSM 17132]
          Length = 650

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS-KPITSAELKSIEDNVNDIIAQ 645
           HS+ HL+  AL  +        G  +  +G  +DV  + KPI+S + K IED + ++  Q
Sbjct: 74  HSSAHLMAEALEALYPGVKFWVGPPV-ENGFYYDVDTNGKPISSDDFKKIEDKMLELARQ 132

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTH 698
               V   +++ DA+          +  D  ++  +E  + G  +       + LC G H
Sbjct: 133 KNEYVRIPISKADALKYF------EEKGDEYKLDLLEGLEDGQITLYRQGNFTDLCRGPH 186

Query: 699 VSSTGEI 705
           + +TG I
Sbjct: 187 IPNTGFI 193


>gi|145295791|ref|YP_001138612.1| threonyl-tRNA synthetase [Corynebacterium glutamicum R]
 gi|140845711|dbj|BAF54710.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 686

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 34/173 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  +G  +D   ++P T  +LK+IE  +  II 
Sbjct: 76  IRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDVAEPFTPEDLKTIEKRMKKIIK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVSV 681
                  R+        + A  L    Y                        +     +V
Sbjct: 135 TGQKFERRVYES---AEAAAEELKNEPYKLELIQDKGNVDPNSDEATEVGAGELTAYDNV 191

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 V  S LC G H+ +T  I    +   S+         AG++RI    
Sbjct: 192 NPRTSEVEWSDLCRGPHIPTTRYIPAFALTRSSAAYWRGDQDNAGLQRIYGTA 244


>gi|73919785|sp|Q8NPZ0|SYT_CORGL RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
          Length = 695

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 34/173 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  +G  +D   ++P T  +LK+IE  +  II 
Sbjct: 85  IRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDAAEPFTPEDLKTIEKRMKKIIK 143

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVSV 681
                  R+        + A  L    Y                        +     +V
Sbjct: 144 TGQKFERRVYES---AEAAAEELKNEPYKLELIQDKGNVDPNSDEATEVGAGELTAYDNV 200

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 V  S LC G H+ +T  I    +   S+         AG++RI    
Sbjct: 201 NPRTSEVEWSDLCRGPHIPTTRYIPAFALTRSSAAYWRGDQDNAGLQRIYGTA 253


>gi|194861340|ref|XP_001969762.1| GG23767 [Drosophila erecta]
 gi|190661629|gb|EDV58821.1| GG23767 [Drosophila erecta]
          Length = 746

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 180 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKE 237

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 238 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 297

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 298 KALKITKNSS 307


>gi|19552881|ref|NP_600883.1| threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
 gi|21324440|dbj|BAB99064.1| Threonyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032]
          Length = 686

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 55/173 (31%), Gaps = 34/173 (19%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  H+L  A+           G  I  +G  +D   ++P T  +LK+IE  +  II 
Sbjct: 76  IRHSCAHVLAQAVQAEFPGTKLGIGPAI-ENGFYYDFDAAEPFTPEDLKTIEKRMKKIIK 134

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKY-----------------------NDRVRVVSV 681
                  R+        + A  L    Y                        +     +V
Sbjct: 135 TGQKFERRVYES---AEAAAEELKNEPYKLELIQDKGNVDPNSDEATEVGAGELTAYDNV 191

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
                 V  S LC G H+ +T  I    +   S+         AG++RI    
Sbjct: 192 NPRTSEVEWSDLCRGPHIPTTRYIPAFALTRSSAAYWRGDQDNAGLQRIYGTA 244


>gi|325048295|emb|CBX25717.1| hypothetical protein [Trichinella spiralis]
          Length = 310

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  H+L  A   + G  +         +G  +D     + +T+ ++  +   +   I  
Sbjct: 128 HSTAHVLGEAAERLFGCCLCYGPPI--ENGFYYDMFMDDRTVTAEDMDKLAKIMKAAIDG 185

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     + +E+ +          +  +                  LC G HV  TG +
Sbjct: 186 KQPFERLELKKEELMEMFKYNPFKLRILENKVKTPTTTAYRCGPLIDLCRGPHVRHTGLL 245

Query: 706 MLLYIVSESS 715
               I   SS
Sbjct: 246 NSFKITKNSS 255


>gi|258619962|ref|ZP_05715002.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587695|gb|EEW12404.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 289

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 81/259 (31%), Gaps = 45/259 (17%)

Query: 511 VEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQ 547
           V+VV  +TPF+  +        D G  I  G    +TD                    V+
Sbjct: 31  VDVVTYKTPFHPVSHIWPDHPADRGVFIWQGCEYPVTDCLVGAVEQASGHLYVGNDIPVK 90

Query: 548 KKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +   G   + VH       + +    + L +D Q +  LS  HSA HL + AL+ +L   
Sbjct: 91  RDESGWVFVVVHRLSEVTALFQVGDRVQLVVDAQYQVSLSRGHSAGHLAYLALNKVLAQS 150

Query: 605 VSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +  +        FD            P  S EL  +   +      +  V+  +   E
Sbjct: 151 YWRKDADRKDPHGYFDFNSYAQISSFVTPNCSTELYRLGKTLRKRGLNSDDVLRDLDLIE 210

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL---------CGGTHVSSTGEIMLL 708
                     L      ++    +   D       L         CGGTH +        
Sbjct: 211 QNTNQQLVQWLALASPIQLECEGLALTDSRYWVCDLHESAKARIPCGGTHANGLD---AF 267

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 268 RTIHVTLKQVDEQHIEAVT 286


>gi|24583839|ref|NP_723725.1| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|22946307|gb|AAF53166.2| Threonyl-tRNA synthetase, isoform A [Drosophila melanogaster]
 gi|211938559|gb|ACJ13176.1| FI05224p [Drosophila melanogaster]
          Length = 747

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 181 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKE 238

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 239 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 298

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 299 KALKITKNSS 308


>gi|325279133|ref|YP_004251675.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
 gi|324310942|gb|ADY31495.1| threonyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712]
          Length = 650

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI--TSAELKSIEDNVN 640
            +  HS+ HL+  AL  +  +     G  I  +G  +D+   + +  T  +L++IE  + 
Sbjct: 69  HAFWHSSAHLMAEALQQLYPNTKFGIGPAI-ENGFYYDIDPGEGVVLTDKDLETIEKKML 127

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR----VVSVEYEDGGVHSSALCGG 696
           ++  Q        +++++A+    +  +   Y   +        + Y   G  +  LC G
Sbjct: 128 ELARQKEEYCRINVSKQEALEHFNS--INETYKVELINDLEDGKITYYRQGSFTD-LCRG 184

Query: 697 THVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT 727
            H+  T  I  + +   +            + RI  IT
Sbjct: 185 PHLPDTSYIKAIKLTGLAGAYWRGNEHNKMLTRIYGIT 222


>gi|195578689|ref|XP_002079196.1| GD23818 [Drosophila simulans]
 gi|194191205|gb|EDX04781.1| GD23818 [Drosophila simulans]
          Length = 747

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 181 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKE 238

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 239 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 298

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 299 KALKITKNSS 308


>gi|195351005|ref|XP_002042027.1| GM26732 [Drosophila sechellia]
 gi|194123851|gb|EDW45894.1| GM26732 [Drosophila sechellia]
          Length = 747

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 181 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKE 238

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 239 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 298

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 299 KALKITKNSS 308


>gi|145348306|ref|XP_001418593.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578823|gb|ABO96886.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 564

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           +  A+  +  S     G  I   G  +D  + +  T  ++K I+  +  II ++ P+   
Sbjct: 1   MAMAVQKVFPSAQCTIGPWIDR-GFYYDFYYPEGFTDQDMKKIQKEMYKIIRKDYPLRRE 59

Query: 653 IMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710
            ++RE+A           K    + ++   +     G     LC G HV STG++     
Sbjct: 60  EVSREEAERRIREINEPYKLEILEAIKTEPITIYHIGDEWWDLCAGPHVESTGKLDQ-KA 118

Query: 711 VSESSIRAGIRR 722
            +  S+     R
Sbjct: 119 FALESLAGAYWR 130


>gi|224012663|ref|XP_002294984.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969423|gb|EED87764.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 253

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 24/178 (13%)

Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIG---DGI------RLQITDVQK-KAEGIFVHHAIV 560
           +E+  D T  + + GGQ  D G       DG          I  V   +A G+  H   +
Sbjct: 48  IELQLDLTTMHPQGGGQPTDVGTITTFPKDGSCCDEVHTANIDKVTIDRASGVVYHAGTM 107

Query: 561 E-----------RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609
                       + I      + +++D   RR LS  H+A H++  A++      +    
Sbjct: 108 VVPSSSSSNIDPQTIFARNTPVKVSVDPNARRILSECHTAGHVVDAAMAQ-CEKMMPPTK 166

Query: 610 SCITPDGLRFDVT--HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
                DG   +             L  ++    ++I Q++P     +   +A +    
Sbjct: 167 GYHFMDGPYVEYKGCIDIGERDDFLDRLKVAYQELIEQDIPTTIETLPLNEAESLCNR 224


>gi|297571384|ref|YP_003697158.1| threonyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931731|gb|ADH92539.1| threonyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595]
          Length = 670

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 83/275 (30%), Gaps = 52/275 (18%)

Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568
            + +     + FYA       D    +     L++  V K  +         +   L   
Sbjct: 10  HECDSPLSGSEFYA-------DQRTIVA----LRVDGVLKDLD--------TDLATLADG 50

Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628
            ++      +      + HSATH+L  A+           G  IT DG  +D  + + +T
Sbjct: 51  ATVEGVDISEPDGLNILRHSATHVLAQAVQNRFPDVNLGIGPFIT-DGFYYDFGNIESVT 109

Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG------------------- 669
              LK +E ++  I+ +    V R ++ +DA    A+                       
Sbjct: 110 PELLKQLEKDMMRIVKEGQRFVRRPISDDDAREELASQPYKLELISLKGGSDADRDQAAD 169

Query: 670 ----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM-LLYIVSESSIRAGIRRIE 724
                     + +      +G V  + LC G H+ ST  I     +       A   R  
Sbjct: 170 GASIEVGGGELTMYDNVRRNGDVVWTDLCRGPHLPSTKLIGNGFALT---RSSAAYWR-- 224

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
              G +A   L             L+  Q  +   
Sbjct: 225 ---GDQANDSLQRIYGTAWPSKDELRAYQERIAEA 256


>gi|320102238|ref|YP_004177829.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Isosphaera
           pallida ATCC 43644]
 gi|319749520|gb|ADV61280.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Isosphaera
           pallida ATCC 43644]
          Length = 752

 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSI 635
                   + HS  H++  A+  +        G   T  G  +DV      ++  +  +I
Sbjct: 82  KDREALDVLRHSTAHVMARAIMRLFPEVRLAFGPT-TAQGFYYDVHIPGRSLSEEDFPAI 140

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----- 690
           E  ++ I+    P     +    AI      L G K + ++  ++ E    GV S     
Sbjct: 141 EAEMSRIVQAGEPFERFTLPVAQAIEF----LEGIKQDFKIEHITQELHTHGVLSFYRQG 196

Query: 691 --SALCGGTHVSSTGEIMLLYIVS 712
               LC G H+   G++    + S
Sbjct: 197 EFVDLCRGPHIPHAGKVGAFKLTS 220


>gi|85093975|ref|XP_959801.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
 gi|28921255|gb|EAA30565.1| threonyl-tRNA synthetase [Neurospora crassa OR74A]
          Length = 788

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +   G  +  +G  +++       + S++   +E+ V  I+ 
Sbjct: 152 HSSAHILGEACERRFGCSLCI-GPPVD-NGFYYEMALPGGAAVQSSDWAPLENIVTKIVK 209

Query: 645 QNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +  P     M++ED +   A       ++  K  D  R     Y +G +    LC G HV
Sbjct: 210 EKQPFQRLEMSKEDLLKMFAYNPYKQHIIKDKIPDGTRTTV--YRNGPLID--LCRGPHV 265

Query: 700 SSTGEIMLLYIVSESS 715
             T  I    I+  SS
Sbjct: 266 PDTSRIEAFAIMKNSS 281


>gi|25013040|gb|AAN71609.1| RH56418p [Drosophila melanogaster]
 gi|220950596|gb|ACL87841.1| Aats-thr-PB [synthetic construct]
          Length = 711

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 145 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKE 202

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 203 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 262

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 263 KALKITKNSS 272


>gi|257387444|ref|YP_003177217.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
 gi|257169751|gb|ACV47510.1| threonyl-tRNA synthetase [Halomicrobium mukohataei DSM 12286]
          Length = 640

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 13/196 (6%)

Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582
           E G  + D    IG G+            G+     + +   L  +  L +  D  +   
Sbjct: 17  EVGATVEDAAYEIGPGLGSD------TVAGVVDGELVDKHTPLPDDADLEIVTDGADEYV 70

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
             + HSA H+   AL  +        G   T DG  +DVT             E+   +I
Sbjct: 71  DVLRHSAAHVFAQALQRLYPEAELTLGPW-TDDGFYYDVTGVDLDEDDLEDIEEEAH-EI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHV 699
           IA++L +   +++RE A+          +              YE G  +   LC G HV
Sbjct: 129 IAEDLDIERVMLDREAALDRYEDNEYKQEILATEAAGEDPVSFYEQGEFYD--LCQGPHV 186

Query: 700 SSTGEIMLLYIVSESS 715
            STGEI    ++  S+
Sbjct: 187 ESTGEIGGFALLEMSA 202


>gi|229513097|ref|ZP_04402563.1| hypothetical protein VCB_000742 [Vibrio cholerae TMA 21]
 gi|229349990|gb|EEO14944.1| hypothetical protein VCB_000742 [Vibrio cholerae TMA 21]
          Length = 305

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGGEYAVTDCVVGAVEQASGHLYVGNDIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKQVDEQHIEAVT 297


>gi|229530106|ref|ZP_04419496.1| hypothetical protein VCG_003218 [Vibrio cholerae 12129(1)]
 gi|229333880|gb|EEN99366.1| hypothetical protein VCG_003218 [Vibrio cholerae 12129(1)]
          Length = 302

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGGEYAVTDCVVGAVEQASGHLYVGNDIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKQVDEQHIEAVT 297


>gi|332030887|gb|EGI70523.1| Threonyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior]
          Length = 714

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+  + G  +         +G  +D     K I++ +   +E    +I+ +
Sbjct: 148 HSSAHVLGEAMERVYGGCLCYGPPI--ENGFYYDMYLGDKGISNTDFPYLEGLYKNIVKE 205

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     M +ED +          +  +                  LC G HV  TG+I
Sbjct: 206 KQPFERLEMTKEDLLEMFKYNEFKVRIINERIQTPTTTAYRCGPLIDLCRGPHVRHTGKI 265

Query: 706 MLLYIVSESS 715
             + I   SS
Sbjct: 266 KAMKITKNSS 275


>gi|34482934|emb|CAE09933.1| THREONYL-TRNA SYNTHETASE [Wolinella succinogenes]
          Length = 536

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
           +G  +D      I   +L  IE  + +I      +    ++RE+AIA  A   L      
Sbjct: 3   EGFYYDFRVESKIGEEDLAIIEKKMKEIAKNGSDIERYTLSREEAIAKFAKDDLK----- 57

Query: 675 RVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRI 723
           +  +  +   D  ++       LC G H+ ST  +    +   +            + RI
Sbjct: 58  QAVISRIPEGDLSIYRQGEFEDLCRGPHLPSTKLLHAFKLTKLAGAYLGGDEKSEMLTRI 117

Query: 724 E--AITGQRARSHLMGQDEKLKS 744
              A   + + +  + Q E+ K 
Sbjct: 118 YGIAFADKESLNAYLHQMEEAKK 140


>gi|110638045|ref|YP_678253.1| threonyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|123354610|sp|Q11UK3|SYT_CYTH3 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|110280726|gb|ABG58912.1| threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 645

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ HLL  AL  +        G  I   G  +DV    +  +  + ++IE  V ++  Q
Sbjct: 73  HSSAHLLAEALEALYPGTKFGIGPAIET-GFYYDVDFGDRAFSQDDFENIEKKVLELAKQ 131

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYN--DRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
               + + ++++DA+A         K +  + +   S+ +   G  +  LC G H+  TG
Sbjct: 132 KNAYIRKEISKKDAVAYFTDKQDPYKLDLLEGLSDGSITFYKQGAFTD-LCRGPHIPDTG 190

Query: 704 EIMLLYIVSESS-------IRAGIRRIEAIT---GQRARSHLMGQDEKLKS 744
            I  + ++S +            + RI  +T    Q  + +L   +E  K 
Sbjct: 191 FIKAVKLMSVAGAYWRGDEKSKQLTRIYGVTFPKQQELKDYLTILEEAKKR 241


>gi|262192495|ref|ZP_06050646.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93]
 gi|262031654|gb|EEY50241.1| predicted metal-dependent hydrolase [Vibrio cholerae CT 5369-93]
          Length = 291

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 70/232 (30%), Gaps = 46/232 (19%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 33  IVTYSTPFHPVSHIWPDHPADRGILIWQGNEYAVTDCVVGAIEQASGHLYVGNDIPVKRE 92

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 93  ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALRYW 152

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 153 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDIYRLGKTLRKRGLNSDDVLRDLSFIEQK 212

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                A  L           G+   D        +E     +   CGGTH  
Sbjct: 213 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCK 262


>gi|213028506|ref|ZP_03342953.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 148

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +   H       +  +G  +DV   + +T  +++++E  ++++  
Sbjct: 71  IRHSCAHLLGHAIKQLWP-HTKMAIGPVVDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129

Query: 645 QNLPVVTRIMNREDAIASG 663
           +N  V+ + ++  +A  + 
Sbjct: 130 KNYDVIKKKVSWHEARETF 148


>gi|24583842|ref|NP_723726.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
 gi|28574141|ref|NP_524839.3| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|7297922|gb|AAF53167.1| Threonyl-tRNA synthetase, isoform B [Drosophila melanogaster]
 gi|22946308|gb|AAN10805.1| Threonyl-tRNA synthetase, isoform C [Drosophila melanogaster]
          Length = 690

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 124 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKE 181

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 182 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 241

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 242 KALKITKNSS 251


>gi|256061142|ref|ZP_05451296.1| Alanyl-tRNA synthetase [Brucella neotomae 5K33]
 gi|261325145|ref|ZP_05964342.1| threonyl/alanyl tRNA synthetase SAD [Brucella neotomae 5K33]
 gi|261301125|gb|EEY04622.1| threonyl/alanyl tRNA synthetase SAD [Brucella neotomae 5K33]
          Length = 115

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQI-TDVQKKAEGIFVHHAIVER 562
           A++G    ++ D+T FYA +GGQ GDTG     DG R++I T V  + +   VH     +
Sbjct: 24  AIAGNGG-IILDRTNFYATSGGQPGDTGFFERADGSRIEIATTVTGETKNEIVHMPAQGQ 82

Query: 563 GILRTEMSLVLTI 575
            +      LVL I
Sbjct: 83  QMPDVGEKLVLHI 95


>gi|325120065|emb|CBZ55617.1| hypothetical protein NCLIV_060420 [Neospora caninum Liverpool]
          Length = 781

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 16/141 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNVND 641
               HS+ H+L  A+    G+ ++   +    +G  +D        + E    +E    +
Sbjct: 161 HVFWHSSAHILGQAIEATFGAQLTVGPAL--TNGFYYDAYMGNATVTEESYGRLEAAAAN 218

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG------ 695
           +I  + P    + ++ +A+   A          +V+++S +  +GG  +   CG      
Sbjct: 219 VIKADQPFCRLVCSKAEALELFADNPF------KVQLISSKIPEGGSTTVYRCGALVDLC 272

Query: 696 -GTHVSSTGEIMLLYIVSESS 715
            G HV STG++    +   S+
Sbjct: 273 RGPHVPSTGKVKAFQVTKHSA 293


>gi|304373385|ref|YP_003856594.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
 gi|304309576|gb|ADM22056.1| Threonyl-tRNA synthetase [Mycoplasma hyorhinis HUB-1]
          Length = 581

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 9/189 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
            +NHSA+HLL  A+  +        G   T +G  +D     P++  +L  IE  +  + 
Sbjct: 7   ELNHSASHLLALAVIKLFPDVQLGFGPA-TDEGFYYDFKFVNPLSEHDLIKIEKMMQKLA 65

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCGGTHV 699
             N  +   +  + D         L  ++    R +     V           LC G H+
Sbjct: 66  NNNFVMKQTLGTQIDFSKQIFKKELLDQFTSENRKITFFSIVNPTKNEYLFEDLCAGGHI 125

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
            +  +I    ++S   I     R +    Q  R +    D K + L  FL + Q      
Sbjct: 126 ENMKQIKHFKLLS---IAGAYWRGKVENEQLTRIYGTAWDTK-EELEEFLHILQERKERD 181

Query: 760 VEEIWEEYR 768
             ++ +E +
Sbjct: 182 HRKLGKELK 190


>gi|325068846|ref|ZP_08127519.1| alanyl-tRNA synthetase [Actinomyces oris K20]
          Length = 129

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIMLVGIS 831
             A    +         ++ ++   S  +  V  +  ++S++   + ++      +V + 
Sbjct: 1   EQAALSARTAGIVSDAVRLGEIRLASADLGTVGSADAVRSLVLDARSRLGEAEPAVVAVG 60

Query: 832 KEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888
               +  ++VV  +   R     A  L R +A+VLGGGGG G+  +AQ GG N    D+A
Sbjct: 61  AVVGSRPVVVVATNAGARDQGIRAGALVRTAAQVLGGGGG-GKDDLAQGGGQNPQALDEA 119

Query: 889 IAGVASFLK 897
           +  VA  ++
Sbjct: 120 LRAVAEQIQ 128


>gi|307200699|gb|EFN80796.1| Threonyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator]
          Length = 691

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 40/199 (20%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+  + G  +         +G  +D+    K I+  +   +E    +I+ +
Sbjct: 124 HSSAHILGEAMERVYGGCLCYGPPI--ENGFYYDMHLDDKGISYTDFPYLESLYKNIVKE 181

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYND-RVRVV--SVEYEDGGVHSS----ALCGGTH 698
             P     M +E+ +          KYN+ ++R++   +       +       LC G H
Sbjct: 182 KQPFERLEMTKENLLEMF-------KYNEFKLRIINEKIHTPTTTAYRCGPLIDLCRGPH 234

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V  TG+I  + I   SS               A        E L+ L         N   
Sbjct: 235 VRHTGKIRAVKITKNSS---------------AYWEGNANAESLQRLYGI--SFPDN--- 274

Query: 759 RVEEIWEEYRKLQLIHAKR 777
              +  +E+ KLQ   AKR
Sbjct: 275 ---KQLKEWEKLQEEAAKR 290


>gi|325336816|gb|ADZ13090.1| Threonyl-tRNA synthetase [Riemerella anatipestifer RA-GD]
          Length = 591

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 18/195 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS+ HLL  A+     +     G  I  +G  +DV    + ++  + + IE  + + 
Sbjct: 70  AFWHSSAHLLAQAILAYYPNAKLTIGPAI-ENGFYYDVDFGDETLSEKDFEKIEQKMLEN 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             ++       +++ +A+   A     T+  + +    + +      +  LC G H+ ST
Sbjct: 129 AKKDSTFKLYAISKAEALKEYADNPYKTELIENLNDGEITFCSHDDFTD-LCRGGHIPST 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G +  + I++     AG           A      ++ +L  +       Q ++   +E 
Sbjct: 188 GIVKAVKILN----AAG-----------AYWRGDEKNPQLTRVYGISFPKQKDLKEYLER 232

Query: 763 IWEEYRKLQLIHAKR 777
           + E  R+      K 
Sbjct: 233 LEEAKRRDHRKLGKE 247


>gi|301767961|ref|XP_002919352.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 718

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + +  S        F +   + +  +EL ++E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQLLGAVLCRGPSTECGFYHDFFLGKERTVRGSELPALERICQELAAAA 192

Query: 647 LPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            P     ++++              L+  K       V      G      LC G H+  
Sbjct: 193 QPFRRLEVSQDQLRQLFKDNPFKLRLIKEKVTGPTATV-----YGCGMLVDLCQGPHLRH 247

Query: 702 TGEIMLLYIVSESS 715
           TG+I  L +++ SS
Sbjct: 248 TGQIGGLKLLTNSS 261


>gi|281352894|gb|EFB28478.1| hypothetical protein PANDA_008019 [Ailuropoda melanoleuca]
          Length = 718

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + +  S        F +   + +  +EL ++E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQLLGAVLCRGPSTECGFYHDFFLGKERTVRGSELPALERICQELAAAA 192

Query: 647 LPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            P     ++++              L+  K       V      G      LC G H+  
Sbjct: 193 QPFRRLEVSQDQLRQLFKDNPFKLRLIKEKVTGPTATV-----YGCGMLVDLCQGPHLRH 247

Query: 702 TGEIMLLYIVSESS 715
           TG+I  L +++ SS
Sbjct: 248 TGQIGGLKLLTNSS 261


>gi|194765983|ref|XP_001965104.1| GF21565 [Drosophila ananassae]
 gi|190617714|gb|EDV33238.1| GF21565 [Drosophila ananassae]
          Length = 749

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 183 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGTMESLVKQIVKE 240

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 241 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 300

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 301 KALKITKNSS 310


>gi|153800558|ref|ZP_01955144.1| hypothetical protein A51_B0734 [Vibrio cholerae MZO-3]
 gi|124123847|gb|EAY42590.1| hypothetical protein A51_B0734 [Vibrio cholerae MZO-3]
          Length = 305

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASDHLYVGNDIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLAQGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKQVDEQHIEAVT 297


>gi|68491354|ref|XP_710514.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
 gi|46431727|gb|EAK91259.1| hypothetical protein CaO19.5685 [Candida albicans SC5314]
          Length = 706

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVNDII 643
           HS+ H+L  A     G H+S      T DG  +D++ +     +T A+  ++E      I
Sbjct: 131 HSSAHILGEACECHYGCHLSHGPP--TEDGFFYDMSINNGETFVTQADFGNLEQVATKAI 188

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +        M +E  +          K+   +     +     V+       LC G H+
Sbjct: 189 KEKQKFERLEMTKEQLLKMFHYNKYKVKF---ISDKIPDGTSTTVYRCGPLIDLCVGPHI 245

Query: 700 SSTGEIMLLYIVSESS 715
             +G I    ++  SS
Sbjct: 246 PHSGRIKAFKVLKNSS 261


>gi|254225027|ref|ZP_04918641.1| hypothetical protein VCV51_0511 [Vibrio cholerae V51]
 gi|125622414|gb|EAZ50734.1| hypothetical protein VCV51_0511 [Vibrio cholerae V51]
          Length = 305

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGREYAVTDCVVGAIEQASGHLYVGNDIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIPACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKQVDEQHIEAVT 297


>gi|255744570|ref|ZP_05418521.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101]
 gi|262161295|ref|ZP_06030406.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1]
 gi|262168788|ref|ZP_06036483.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27]
 gi|255737601|gb|EET92995.1| predicted metal-dependent hydrolase [Vibrio cholera CIRS 101]
 gi|262022906|gb|EEY41612.1| predicted metal-dependent hydrolase [Vibrio cholerae RC27]
 gi|262029045|gb|EEY47698.1| predicted metal-dependent hydrolase [Vibrio cholerae INDRE 91/1]
          Length = 294

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 33  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNNIPVKRE 92

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 93  ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLGYLALNKVLAQGYW 152

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 153 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 212

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 213 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 267

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 268 QSIQVTLKQVDEQHIEAVT 286


>gi|15640783|ref|NP_230413.1| hypothetical protein VC0764 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585752|ref|ZP_01675547.1| hypothetical protein VC274080_0845 [Vibrio cholerae 2740-80]
 gi|121725980|ref|ZP_01679279.1| hypothetical protein VCV52_0730 [Vibrio cholerae V52]
 gi|147675742|ref|YP_001216249.1| hypothetical protein VC0395_A0293 [Vibrio cholerae O395]
 gi|153817285|ref|ZP_01969952.1| hypothetical protein A5C_0781 [Vibrio cholerae NCTC 8457]
 gi|153821401|ref|ZP_01974068.1| hypothetical protein A5E_0857 [Vibrio cholerae B33]
 gi|227080943|ref|YP_002809494.1| hypothetical protein VCM66_0722 [Vibrio cholerae M66-2]
 gi|229505622|ref|ZP_04395132.1| hypothetical protein VCF_000833 [Vibrio cholerae BX 330286]
 gi|229510706|ref|ZP_04400185.1| hypothetical protein VCE_002113 [Vibrio cholerae B33]
 gi|229517828|ref|ZP_04407272.1| hypothetical protein VCC_001852 [Vibrio cholerae RC9]
 gi|229608640|ref|YP_002879288.1| hypothetical protein VCD_003562 [Vibrio cholerae MJ-1236]
 gi|254847901|ref|ZP_05237251.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298499103|ref|ZP_07008910.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655210|gb|AAF93929.1| hypothetical protein VC_0764 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550115|gb|EAX60131.1| hypothetical protein VC274080_0845 [Vibrio cholerae 2740-80]
 gi|121631462|gb|EAX63832.1| hypothetical protein VCV52_0730 [Vibrio cholerae V52]
 gi|126512201|gb|EAZ74795.1| hypothetical protein A5C_0781 [Vibrio cholerae NCTC 8457]
 gi|126521111|gb|EAZ78334.1| hypothetical protein A5E_0857 [Vibrio cholerae B33]
 gi|146317625|gb|ABQ22164.1| hypothetical protein VC0395_A0293 [Vibrio cholerae O395]
 gi|227008831|gb|ACP05043.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012588|gb|ACP08798.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229344543|gb|EEO09517.1| hypothetical protein VCC_001852 [Vibrio cholerae RC9]
 gi|229350671|gb|EEO15612.1| hypothetical protein VCE_002113 [Vibrio cholerae B33]
 gi|229357845|gb|EEO22762.1| hypothetical protein VCF_000833 [Vibrio cholerae BX 330286]
 gi|229371295|gb|ACQ61718.1| hypothetical protein VCD_003562 [Vibrio cholerae MJ-1236]
 gi|254843606|gb|EET22020.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297543436|gb|EFH79486.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 305

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNNIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLGYLALNKVLAQGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKQVDEQHIEAVT 297


>gi|238882425|gb|EEQ46063.1| threonyl-tRNA synthetase [Candida albicans WO-1]
          Length = 706

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVNDII 643
           HS+ H+L  A     G H+S      T DG  +D++ +     +T A+  ++E      I
Sbjct: 131 HSSAHILGEACECHYGCHLSHGPP--TEDGFFYDMSINNGETFVTQADFGNLEQVATKAI 188

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +        M +E  +          K+   +     +     V+       LC G H+
Sbjct: 189 KEKQKFERLEMTKEQLLKMFHYNKYKVKF---ISDKIPDGTSTTVYRCGPLIDLCVGPHI 245

Query: 700 SSTGEIMLLYIVSESS 715
             +G I    ++  SS
Sbjct: 246 PHSGRIKAFKVLKNSS 261


>gi|147857589|emb|CAN80995.1| hypothetical protein VITISV_041584 [Vitis vinifera]
          Length = 1238

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 22/105 (20%)

Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351
            NEGR YVLR I+RRA+ Y   +L   E                            +  +
Sbjct: 232 DNEGREYVLRHILRRAVRYGSEVLKAQEGFFN---------------------SAHQFII 270

Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396
             E+  FGKTL +G+         +    +      ++L++    
Sbjct: 271 AEEEASFGKTLLKGIEKFKKAAHEVQGKILNGQANIYRLFEETNF 315


>gi|195114918|ref|XP_002002014.1| GI17149 [Drosophila mojavensis]
 gi|193912589|gb|EDW11456.1| GI17149 [Drosophila mojavensis]
          Length = 691

 Score = 51.2 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  +  I+ +
Sbjct: 125 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGTMETLIKQIVKE 182

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 183 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTSDRTTVYKCGSLIDLCRGPHVRHTGKV 242

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 243 KALKITKNSS 252


>gi|255534998|ref|YP_003095369.1| threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341194|gb|ACU07307.1| Threonyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 639

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 18/195 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS+ HLL  A+           G  I  +G  +DV    + ++  + ++IE  + + 
Sbjct: 70  AFWHSSAHLLAQAIIEFYPEAKLTIGPAI-ENGFYYDVDFGDETLSEKDFENIEKKMLEN 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +N       +++ DA+   A     T+    +    + +      +  LC G H+ ST
Sbjct: 129 AKKNSTFQLYPVSKADALKEYADNPYKTELISNLNDGEITFCSHDNFTD-LCRGGHIPST 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G +  + I++     AG           A      ++ +L  +       Q ++   +E 
Sbjct: 188 GIVKAVKILN----AAG-----------AYWRGDEKNRQLTRVYGISFPKQKDLTEYLER 232

Query: 763 IWEEYRKLQLIHAKR 777
           + E  R+      K 
Sbjct: 233 LEEAKRRDHRKLGKE 247


>gi|213403436|ref|XP_002172490.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
 gi|212000537|gb|EEB06197.1| threonyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275]
          Length = 699

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 9/134 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A     G H+               +  +K +T+ +  ++E    + I Q 
Sbjct: 117 HSSAHILGEASELHFGCHLCIGPPTTDGFFYEMAIDDNKTVTTEDYPALEALAKNAIKQK 176

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHVSS 701
            P    I+++E+ +          KY   +    +                LC G HV  
Sbjct: 177 QPFERLIVSKENLLKMFKHN----KYKQHIIESKIPDGTSTTVYRCGPLIDLCVGPHVPH 232

Query: 702 TGEIMLLYIVSESS 715
           TG +    ++  SS
Sbjct: 233 TGRVKAFAVMKNSS 246


>gi|156552955|ref|XP_001603180.1| PREDICTED: similar to threonyl-tRNA synthetase [Nasonia
           vitripennis]
          Length = 859

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 8/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  AL  + G  +               +   K I+  +   +E    +I+   
Sbjct: 291 HSSAHILGEALERVYGGCLCYGPPIENGFYYDMFMGQDKGISQEDFPYLESLFKNIVKDK 350

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
                  M +ED +          +         V+     V+       LC G HV +T
Sbjct: 351 QSFERLEMKKEDLLEMFKYNEFKVRILKE----KVQTPTTTVYRCGPLIDLCRGPHVRNT 406

Query: 703 GEIMLLYIVSESS 715
           G+I    I   SS
Sbjct: 407 GKIKAAKITKSSS 419


>gi|70606938|ref|YP_255808.1| alanyl-tRNA like protein [Sulfolobus acidocaldarius DSM 639]
 gi|68567586|gb|AAY80515.1| alanyl-tRNA like protein [Sulfolobus acidocaldarius DSM 639]
          Length = 147

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 2/124 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             H+A H+L  A+  +LG+           +  R  V   +  +  E+  I +  N  + 
Sbjct: 5   RTHTALHVLKGAVVKVLGAK-WTASVYTQDNHGRLTVKFERKPSDEEIAEIFNLANKKVQ 63

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +N  + T +++R  A       +    +     V  +        +   C  +H ++TGE
Sbjct: 64  ENALIRTEVLDRVQAERKYGDQIYDL-FPVPPEVSQLNIVVIDDWNINACNKSHTNTTGE 122

Query: 705 IMLL 708
           +  +
Sbjct: 123 VGQI 126


>gi|145534462|ref|XP_001452975.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420675|emb|CAK85578.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1348

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L  AL  + G H+   G  I              +T  +   IE   +D+ A  
Sbjct: 161 HSSSHILGSALEEVYGCHLCI-GPAIDGGFFYDCYIGDYKVTQNDYVKIEKAASDLAASK 219

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
                 ++ +++ +          +    +     E      +       LC G H+ +T
Sbjct: 220 QEFQRAVLTKDECLELFGTNPFKRQL---ITNKIPEGAMTTAYKCGNLIDLCTGPHLPNT 276

Query: 703 GEIMLLYIVSESS 715
             +    +   S+
Sbjct: 277 SYVKAFQVTKNSA 289


>gi|313205743|ref|YP_004044920.1| ser-tRNA(thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|312445059|gb|ADQ81414.1| Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase [Riemerella
           anatipestifer DSM 15868]
 gi|315022861|gb|EFT35885.1| threonyl-tRNA synthetase [Riemerella anatipestifer RA-YM]
          Length = 641

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 18/195 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS+ HLL  A+     +     G  I  +G  +DV    + ++  + + IE  + + 
Sbjct: 70  AFWHSSAHLLAQAILAYYPNAKLTIGPAI-ENGFYYDVDFGDETLSEKDFEKIEQKMLEN 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             ++       +++ +A+   A     T+  + +    + +      +  LC G H+ ST
Sbjct: 129 AKKDSTFKLYAISKAEALKEYADNPYKTELIENLNDGEITFCSHDDFTD-LCRGGHIPST 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G +  + I++     AG           A      ++ +L  +       Q ++   +E 
Sbjct: 188 GIVKAVKILN----AAG-----------AYWRGDEKNPQLTRVYGISFPKQKDLKEYLER 232

Query: 763 IWEEYRKLQLIHAKR 777
           + E  R+      K 
Sbjct: 233 LEEAKRRDHRKLGKE 247


>gi|229523414|ref|ZP_04412821.1| hypothetical protein VIF_000274 [Vibrio cholerae TM 11079-80]
 gi|229339777|gb|EEO04792.1| hypothetical protein VIF_000274 [Vibrio cholerae TM 11079-80]
          Length = 305

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNDIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKQVDEQHIEAVT 297


>gi|153216247|ref|ZP_01950347.1| hypothetical protein A55_0792 [Vibrio cholerae 1587]
 gi|124114392|gb|EAY33212.1| hypothetical protein A55_0792 [Vibrio cholerae 1587]
          Length = 294

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 33  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNDIPVKRE 92

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 93  ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 152

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 153 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 212

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      +   
Sbjct: 213 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTAF 267

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 268 QSIQVTLKQVDEQHIEAVT 286


>gi|209879794|ref|XP_002141337.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
 gi|209556943|gb|EEA06988.1| threonyl-tRNA synthetase family protein [Cryptosporidium muris
           RN66]
          Length = 743

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L   +    GS ++  G  ++P         +  ++  +   IE     +I++ 
Sbjct: 162 HSSAHILGQCMENEFGSLLTI-GPALSPGFYYDSYMGNNSVSKDDYPIIEQCAKKVISEK 220

Query: 647 LPVVTRIMNREDAIASG-----AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
                 + ++E+A+          +L+ +K  +  +     Y  G      LC G HV  
Sbjct: 221 QSFERLVCSKEEALELFQDNPFKLSLISSKVPENGKTTV--YRCGNFID--LCMGPHVPH 276

Query: 702 TGEIMLLYIVSESS 715
           TG I    I   S+
Sbjct: 277 TGIIKAFKITKNSA 290


>gi|149030652|gb|EDL85689.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Rattus norvegicus]
          Length = 617

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S+ H+L  A    LG+ + +  S  +   L F +   + + S EL ++E    +II    
Sbjct: 82  SSAHVLGAAAEQHLGAVLCRGPSTESGFYLDFFLGKERTVRSTELPTLERICQEIITAAQ 141

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P      +R                 +     +     G   S  LC G H+  TG+I  
Sbjct: 142 PFRRLEASRGQLRQLFKDNHFKLHVIEEKVTGTTATVYGCGMSVDLCQGPHLRHTGQIGA 201

Query: 708 LYIVSES 714
           L +++E 
Sbjct: 202 LKLLTEQ 208


>gi|145532881|ref|XP_001452193.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419876|emb|CAK84796.1| unnamed protein product [Paramecium tetraurelia]
          Length = 428

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L  AL  + G H+   G  I              +T  +   IE   +D+ A  
Sbjct: 161 HSSSHILGSALEEVYGCHLCI-GPAIDGGFFYDCYIGDYKVTQNDYVKIEKAASDLAASK 219

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
                 ++ +++ +          +    +     E      +       LC G H+ +T
Sbjct: 220 QEFQRAVLTKDECLELFGTNPFKRQL---ITNKIPEGAMTTAYKCGNLIDLCTGPHLPNT 276

Query: 703 GEIMLLYIVSESS 715
             +    +   S+
Sbjct: 277 SYVKAFQVTKNSA 289


>gi|168702447|ref|ZP_02734724.1| threonyl-tRNA synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 620

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 24/183 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H+L  A+           G      G  +D       T  EL+ I + +  II 
Sbjct: 26  LRHSLAHVLAQAVVEKFPQAKPTIGPP-NEYGFYYDFDLDVNPTEGELEWIANRMKQIIK 84

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-----------TKYNDRVRVVSVEYEDGGVHSSAL 693
                  R ++ ++  A                    +Y +      V           L
Sbjct: 85  GKHAFKVREISADEGRALFKDNPYKLELIDGLTKGQDEYGNASAAAPVLTVYQQDTFVDL 144

Query: 694 CGGTHVSSTGEIML--LYIVSES-------SIRAGIRRIEAIT---GQRARSHLMGQDEK 741
           C G HV +T ++      I   +       S    ++R  A     G   ++HL   +E 
Sbjct: 145 CRGPHVEATNDLDPKGFKIQQVTGSYWRGDSKNKSLKRFHATAWASGDDLKAHLARLEEA 204

Query: 742 LKS 744
            K 
Sbjct: 205 AKR 207


>gi|299471018|emb|CBN78879.1| threonine--tRNA ligase [Ectocarpus siliculosus]
          Length = 704

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 8/143 (5%)

Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636
                Q    HS+ H L  AL   LG H++ +G  +              +   +LK ++
Sbjct: 219 EDKEAQTVFWHSSAHCLGFALEKKLGCHLT-HGPPVDNGFFYDCYMGGSAVGEKDLKDLD 277

Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----SA 692
             V             ++ +E+A+          +Y   +     +     V+       
Sbjct: 278 KEVTRCCKAKQTFDRLVLTKEEALDMFDYNAFKKEY---INTRIPDGGSTTVYRNGDFVD 334

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G HV  +  I     +  SS
Sbjct: 335 LCRGPHVPYSTMIQAFNSIRTSS 357


>gi|300778181|ref|ZP_07088039.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
 gi|300503691|gb|EFK34831.1| threonine--tRNA ligase [Chryseobacterium gleum ATCC 35910]
          Length = 639

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 18/195 (9%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS+ HLL  A+           G  I   G  +DV    + ++  + + IE  + + 
Sbjct: 70  AFWHSSAHLLAQAILEFYPDAKLTIGPAI-ESGFYYDVDFGDESLSEKDFEKIEKKILEN 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +        +++E+A+ + A      +    +    + +      +  LC G H+ +T
Sbjct: 129 AKKGSTFSLYPVSKEEALKTYADNPYKVELISNLNDGEITFVTHDNFTD-LCRGGHIPNT 187

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           G +  + I++     AG           A      ++ +L  +       Q ++   +E 
Sbjct: 188 GIVKAVKILN----AAG-----------AYWRGNEKNPQLTRVYGISFPKQKDLTEYLER 232

Query: 763 IWEEYRKLQLIHAKR 777
           + E  R+      K 
Sbjct: 233 LEEAKRRDHRKLGKE 247


>gi|322709352|gb|EFZ00928.1| threonyl-tRNA synthetase, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 759

 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 28/206 (13%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      HSA H+L  A     G  +S              +     +   +  ++
Sbjct: 123 DPEGR--AVFWHSAAHVLGEACEHQFGCMLSHGPPTNMGFFYDMAMREGDAVKETDRPAL 180

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----S 691
           E        +  P     + +ED       +     Y ++      +     V+      
Sbjct: 181 EALAKKFFKEKQPFERVEIAKEDLRKLFGYSKYKMHYIEKF---VPDGGSTTVYRNGSLV 237

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------QDEKLKS 744
            LC G H+ +T +I    I+  SS          + G +A   L         +++++K 
Sbjct: 238 DLCTGPHIQNTKQISAFKIMGNSSA-------YFL-GDQANDSLQRISGVAFPKNDQMKE 289

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKL 770
             ++L         R  ++  + +KL
Sbjct: 290 WLTYL----EEAKKRDHQLIGKNQKL 311


>gi|86134203|ref|ZP_01052785.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
 gi|85821066|gb|EAQ42213.1| Threonyl-tRNA synthetase [Polaribacter sp. MED152]
          Length = 647

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L+T+ SLVL     +  + +  HS+ H+L  A+ +   +     G  I  +G  +D+  
Sbjct: 50  PLKTDGSLVLYTFNDDEGKKAFWHSSAHVLAEAILSFHPNAKLTIGPAID-NGFYYDLDL 108

Query: 624 -SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVS 680
             + I+  +  +IE    +I         R +++ DA++   A       +  + +    
Sbjct: 109 GDETISEKDFSAIEKKFLEIARGKHEFKMREVSKADALSLYKAENNPYKVELIENLTDGD 168

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           + + D    +  LC G H+ +TG I  + I+   ++     R
Sbjct: 169 ITFCDHSNFTD-LCRGGHIPNTGIIKAIKIM---NVAGAYWR 206


>gi|311246798|ref|XP_003122346.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like
           [Sus scrofa]
          Length = 801

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G H+    S  T +G   D  T  + ++S EL +++     II
Sbjct: 231 YWHSSAHVLGEAMELHFGGHL--CCSTPTDEGFYCDMFTEDRAVSSTELPALQSTCEAII 288

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  P     +++E  +               K       V             LC G H
Sbjct: 289 KEQQPFERLEVSKEVLLDMFKYNKFKCRILNEKIKTPTTTVYRCGP-----LVDLCKGPH 343

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+   + I   +S
Sbjct: 344 VRHTGKTNAIKIFKSAS 360


>gi|297581163|ref|ZP_06943087.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534479|gb|EFH73316.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 302

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 81/259 (31%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 44  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNDIPVKRE 103

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 104 ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 163

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 164 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 223

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      + + 
Sbjct: 224 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTVF 278

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 279 QSIQVTLKQVDEQHIEAVT 297


>gi|153828294|ref|ZP_01980961.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876248|gb|EDL74383.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 291

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 81/259 (31%), Gaps = 49/259 (18%)

Query: 513 VVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQKK 549
           +V   TPF+  +        D G  I  G    +TD                    V+++
Sbjct: 33  IVTYSTPFHPVSHIWPDHPADRGILIWQGSEYAVTDCVVGAIEQASGHLYVGNDIPVKRE 92

Query: 550 AEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
             G   + VH         +    + L +D Q +  LS  HSA HL + AL+ +L     
Sbjct: 93  ESGWLFVVVHRLGEVIAACQVGDKVQLQVDTQYQASLSRGHSAGHLAYLALNKVLALGYW 152

Query: 607 QNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
           +  +        FD            P  S ++  +   +      +  V+  +   E  
Sbjct: 153 RKDAERKDPQGYFDFNSYAQISSDVTPDCSTDVYRLGKTLRKRGLNSDDVLRDLSFIEQK 212

Query: 660 IASGAAALL-----------GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
                A  L           G+   D        +E     +   CGGTH      + + 
Sbjct: 213 TNEQLAQWLALASPIRLECTGSTLTDSRYWECDLHEAN--IARIPCGGTHCKG---LTVF 267

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 268 QSIQVTLKQVDEQHIEAVT 286


>gi|111219789|ref|YP_710583.1| threonyl-tRNA synthetase [Frankia alni ACN14a]
 gi|111147321|emb|CAJ58970.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) [Frankia alni
           ACN14a]
          Length = 682

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 21/150 (14%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           + HS  H++  A+  +        G  I  +G  +D    KP  + +L+ I+  + +I+ 
Sbjct: 75  LRHSTAHVMAQAVQDLFDEARLGIGPPI-ENGFYYDFDVPKPFQAEDLERIQARMREIVK 133

Query: 645 QNLPVVTRIMNREDA-------------------IASGAAALLGTKYNDRVRVVSVEYED 685
           Q      R++   +A                    ASGAAA       +     +V+   
Sbjct: 134 QGQRFRRRVLTSREAAREELAAEPFKLELVDIKGEASGAAAT-EVGSGELTMYDNVDPRS 192

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G V  + LC G H+ ST  I    ++  S+
Sbjct: 193 GEVVWTDLCRGPHLPSTHLIPAFALLRNSA 222


>gi|297808713|ref|XP_002872240.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
 gi|297318077|gb|EFH48499.1| AT5g26830/F2P16_90 [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-EL 632
             D    R  ++ HS+ H+L  AL    G  +         +G  +D  + +   S    
Sbjct: 139 KFDSDKGRD-TLWHSSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGFYGELGLSENHF 197

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSS 691
            +IE        +  P     + ++ A+   +         ND     ++     G    
Sbjct: 198 PNIEAGAAKAAKEAQPFERIEVTKDQALEMFSENNFKVEIINDLPADKTITVYRCGP-LV 256

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LC G H+ +T  +     +  SS               A      + E L+ +      
Sbjct: 257 DLCRGPHIPNTSFVKAFKCLRASS---------------AYWRGNKERESLQRVYGI-SY 300

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                + +  +  EE +K       +K +L
Sbjct: 301 PDQKQLKKYLQFLEEAKKYDHRLLGQKQEL 330


>gi|258627194|ref|ZP_05721982.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580496|gb|EEW05457.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 289

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 82/259 (31%), Gaps = 45/259 (17%)

Query: 511 VEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD--------------------VQ 547
           V+VV  +TPF+  +        D G  I  G    +TD                    V+
Sbjct: 31  VDVVTYKTPFHPVSHIWPDHPADRGVFIWQGCEYPVTDCLVGAVEQASGHLYVGNYIPVK 90

Query: 548 KKAEG---IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
           +   G   + VH       + +   S+ L ID Q +  LS  HSA HL + AL+ +L   
Sbjct: 91  RDESGWVFVVVHRLSEVTTLFQVGDSVQLMIDEQYQVSLSRGHSAGHLAYLALNKVLAQS 150

Query: 605 VSQNGSCITPDGLRFDVTHS-------KPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657
             +  +        FD            P  S +L  +   +      +  V+  +   E
Sbjct: 151 YWRKDADRKDPHGYFDFNSYAQISSFVTPNCSTDLYRLGKTLRKRGLNSDDVLRDLDLIE 210

Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL---------CGGTHVSSTGEIMLL 708
                     L      ++    +   D       L         CGGTH +        
Sbjct: 211 QNTNQQLVQWLALASPVQLECEGLALTDSRYWVCDLHESAKARIPCGGTHANGLD---AF 267

Query: 709 YIVSESSIRAGIRRIEAIT 727
             +  +  +   + IEA+T
Sbjct: 268 RTIHVTLKQVDEQHIEAVT 286


>gi|21428938|gb|AAM50188.1| GH20022p [Drosophila melanogaster]
          Length = 747

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+         +G  +D+      I++ +  ++E  V  I+ +
Sbjct: 181 HSSAHIMGEAMERIYGGHLCYGPPI--ENGFYYDMHLEGEGISTNDYGAMEGLVKQIVKE 238

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 239 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 298

Query: 706 MLLYIVSES 714
             L I   S
Sbjct: 299 KALKITKNS 307


>gi|67605980|ref|XP_666722.1| threonyl-tRNA synthetase [Cryptosporidium hominis TU502]
 gi|54657772|gb|EAL36495.1| threonyl-tRNA synthetase [Cryptosporidium hominis]
          Length = 763

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L   L    G+ V+  G  + P         +  +++ E   IE+    II++ 
Sbjct: 166 HSSSHILGQCLENEYGAQVTI-GPALNPGFYYDSYMGTHSVSNTEYSDIENCAKTIISEK 224

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
                   N+E+A+               +     +     ++       LC G H+  T
Sbjct: 225 QQFERLQCNKEEALELFKDNPFKVSL---IMSKIPDGAQTTIYRCGSFVDLCTGPHIPHT 281

Query: 703 GEIMLLYIVSESS 715
           G +    +   S 
Sbjct: 282 GIVKAFKVTKNSG 294


>gi|66362768|ref|XP_628350.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
 gi|46229397|gb|EAK90215.1| threonyl-tRNA synthetase (RNA binding domain TGS+HxxxH+tRNA
           synthetase) [Cryptosporidium parvum Iowa II]
          Length = 763

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L   L    G+ V+  G  + P         +  +++ E   IE+    II++ 
Sbjct: 166 HSSSHILGQCLENEYGAQVTI-GPALNPGFYYDSYMGTHSVSNTEYSDIENCAKTIISEK 224

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
                   N+E+A+               +     +     ++       LC G H+  T
Sbjct: 225 QQFERLQCNKEEALELFKDNPFKVSL---IMSKIPDGAQTTIYRCGSFVDLCTGPHIPHT 281

Query: 703 GEIMLLYIVSESS 715
           G +    +   S 
Sbjct: 282 GIVKAFKVTKNSG 294


>gi|253987613|ref|YP_003038969.1| hypothetical protein PAU_00130 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779063|emb|CAQ82223.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 295

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 47/251 (18%)

Query: 509 QKVEVVFDQTPFYAEAG---GQLGDTGCAIGDGIRLQITDVQKKA---EGIFV------- 555
               ++   +PFY +      QL D G    D   L +T V         +++       
Sbjct: 36  NGAILITQDSPFYPKNYKWPDQLHDNGIISIDDKELAVTKVYTAGLINGNLYIDQEITKQ 95

Query: 556 ----------HHAIVERGILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602
                     H+    +GI        ++ L+I+ + R ++S  HS  H +  AL+    
Sbjct: 96  ATSPAKIMPAHYLPDLQGISERDLIGKTVTLSINDKTRYRVSAAHSMAHFMSLALNKAT- 154

Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV---------------NDIIAQNL 647
           +H+         D L         I  + +  ++                  N +I    
Sbjct: 155 NHIWSKVY--DTDDLGNYNLDKAAIYQSSITELKSVDIYRFGKSLKKKGFDKNILIENLD 212

Query: 648 PVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            +   +     + +  G    +  K  +       +        +  CGGTH+ +  E+ 
Sbjct: 213 KINREVNSTLNNWLTQGVEITVEYKSKEISDTRLWKSTIDSTVVTIPCGGTHIKNINEVK 272

Query: 707 LLYIVSESSIR 717
            + I  E  I 
Sbjct: 273 GVNI--EIKIG 281


>gi|195387892|ref|XP_002052626.1| GJ17652 [Drosophila virilis]
 gi|194149083|gb|EDW64781.1| GJ17652 [Drosophila virilis]
          Length = 745

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+          G  +D+      I++ +  ++E  V  I+ +
Sbjct: 179 HSSAHIMGEAMERIYGGHLCYGPPI--ESGFYYDMHLEGEGISTNDYGTMETLVKQIVKE 236

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 237 KQNFERLEMKKSDLLEMFKYNEFKVRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 296

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 297 KALKITKNSS 306


>gi|322697146|gb|EFY88929.1| threonyl-tRNA synthetase, putative [Metarhizium acridum CQMa 102]
          Length = 759

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 28/206 (13%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D + R      HSA H+L  A     G  +S              +     +   +  ++
Sbjct: 123 DPEGR--AVFWHSAAHVLGEACEHQFGCMLSHGPPTNMGFFYDMAMREGDAVKETDRPAL 180

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS----S 691
           E        +  P     + +ED       +     Y ++      +     V+      
Sbjct: 181 EALAKKFFKEKQPFERVEIAKEDLRKLFGYSKYKMHYIEKF---VPDGGSTTVYRNGSLV 237

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------QDEKLKS 744
            LC G H+ +T +I    I+  SS          + G +A   L         +++++K 
Sbjct: 238 DLCTGPHIQNTKQISAFKIMGNSSA-------YFL-GDQANDSLQRISGVAFPKNDQMKE 289

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKL 770
             ++L         R  ++  + +KL
Sbjct: 290 WLTYL----EEAKKRDHQLIGKNQKL 311


>gi|158299584|ref|XP_319682.4| AGAP008929-PA [Anopheles gambiae str. PEST]
 gi|157013587|gb|EAA14818.5| AGAP008929-PA [Anopheles gambiae str. PEST]
          Length = 761

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 1/129 (0%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A+    G H+   G  I              I++ +  ++E  V  I+ + 
Sbjct: 195 HSSAHILGEAMEKRYGGHLCY-GPPIDNGFYYDMFLEGSGISNQDYGALESEVKRIVKEK 253

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P     M + D +          +  +                  LC G HV +TG++ 
Sbjct: 254 QPFERLEMKKADLLRMFEYNQFKVRILNEKVTTETTTVYRCGPLIDLCRGPHVRNTGKVK 313

Query: 707 LLYIVSESS 715
            L +V  S+
Sbjct: 314 ALKVVKNSA 322


>gi|330752453|emb|CBL87403.1| threonyl-tRNA synthetase [uncultured Flavobacteria bacterium]
          Length = 646

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDI 642
           +  HS++H+L  AL  +        G  I  +G  +DV   +  I+  +L +IE  + +I
Sbjct: 70  AFWHSSSHVLAQALEELYPGVKLSIGPAI-ENGFYYDVDLGNLSISEKDLGAIETKMLEI 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
             +      + +++ DA+            +  + +    + + D    +  LC G H+ 
Sbjct: 129 SREKHDFKMKSVSKSDALDKYRKEANPYKVELIENLTDGEITFCDHDSFTD-LCRGGHIP 187

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG I  + ++S   +     R                +++L  +       Q  +   +
Sbjct: 188 NTGLIKAVKLLS---VAGAYWR------------GDENNKQLTRIYGISFPKQKALKEHL 232

Query: 761 EEIWEEYRKLQLIHAKRKLQL 781
             + EE +K       ++L+L
Sbjct: 233 -ALLEEAKKRDHRKLGKQLEL 252


>gi|157115843|ref|XP_001658309.1| threonyl-tRNA synthetase [Aedes aegypti]
 gi|108883479|gb|EAT47704.1| threonyl-tRNA synthetase [Aedes aegypti]
          Length = 716

 Score = 50.5 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 109/339 (32%), Gaps = 45/339 (13%)

Query: 420 QALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476
           + LE  + +A            EK      +   +  A +FI + +    +   +  + L
Sbjct: 11  EKLELNQQKASKMKKEKQKNQQEKGSGASSAPAAEKPAPEFIDHRIKIYDELKAQYLEEL 70

Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536
            +KP           +K  +  G+ V+            + TP+    G   G     + 
Sbjct: 71  AKKPKNP--------IKVTLPDGKEVDATSW--------ESTPYDVAKGISQGLADNTVI 114

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596
             +  ++ D+ +  EG        +  +L+ +      + +         HS+ H+L  A
Sbjct: 115 ARVNNELWDLDRPLEG------DCKLQLLKFDDPDAQAVFW---------HSSAHILGEA 159

Query: 597 LSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655
           +    G H+         +G  +D       I++ +  ++E  V  I+    P     M 
Sbjct: 160 MEKRYGGHLCYGPPI--ENGFYYDMFLEGSGISNQDYGALESEVKKIVKDKQPFERLEMK 217

Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           + D +          +  +                  LC G HV  TG++  L +V  SS
Sbjct: 218 KSDLLKMFEYNEFKLRILNEKVTTDTTTVYRCGPLIDLCRGPHVRHTGKVKALKVVKNSS 277

Query: 716 I-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
                      ++RI  I+       L   ++  +  A 
Sbjct: 278 TYWEGKADAETLQRIYGISFPE-PKQLKEWEKIQEEAAK 315


>gi|258653602|ref|YP_003202758.1| threonyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
 gi|258556827|gb|ACV79769.1| threonyl-tRNA synthetase [Nakamurella multipartita DSM 44233]
          Length = 699

 Score = 50.5 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 56/193 (29%), Gaps = 36/193 (18%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HSA H+L  A+           G  I  DG  +D    +P T  +L  +E  +  II 
Sbjct: 75  IRHSAAHVLAQAVQDKFPDAKLGIGPPI-KDGFYYDFDVDRPFTPDDLADLEKRMRKIIK 133

Query: 645 QNLPVVTRIMN----------------------REDAIASGAAALLGTKYNDRVRVVSVE 682
                  R+++                       + A+   A   +     +     ++ 
Sbjct: 134 SGQRFARRVVDSPAAARAELAAEPYKLELIDLKSDAAVDGSADEAVEVGAGELTIYDNLH 193

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR---------RIEAIT--GQRA 731
              G      LC G HV +T  I    ++   S  A  R         RI         A
Sbjct: 194 AHTGDRVWGDLCRGPHVPTTRAIPAFQLLR--SAAAYWRGSEKNPQLQRIYGTAWESAEA 251

Query: 732 RSHLMGQDEKLKS 744
                    + + 
Sbjct: 252 LEAYQQWHAEAER 264


>gi|296489553|gb|DAA31666.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
          Length = 718

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + Q  S        F +   + +  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQLLGAVLCQGPSTECGFYHDFFLGKERTVKGSELPVLERFCQELTAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R              +  +           G      LC G H+  TG+I 
Sbjct: 193 QPFRRLEASRAQLRQLFKDNPFKLRLIEEKVTGPTATVYGCGMLVDLCRGPHLRHTGQIG 252

Query: 707 LLYIVSESS 715
            L ++S SS
Sbjct: 253 GLKLLSNSS 261


>gi|67538984|ref|XP_663266.1| hypothetical protein AN5662.2 [Aspergillus nidulans FGSC A4]
 gi|40743565|gb|EAA62755.1| hypothetical protein AN5662.2 [Aspergillus nidulans FGSC A4]
 gi|259484865|tpe|CBF81451.1| TPA: threonyl-tRNA synthetase, putative (AFU_orthologue;
           AFUA_4G13700) [Aspergillus nidulans FGSC A4]
          Length = 722

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 82/239 (34%), Gaps = 31/239 (12%)

Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           V  K +G          G      S V   D + R      HS+ H L  A     G  +
Sbjct: 94  VIAKVDGQLWDLGRPLEGECTV--SYVPFSDPEGRE--VFWHSSAHCLGEACECEYGCML 149

Query: 606 SQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           S      TP G  +D+     + +  ++ K++++  N I  +        + +E+     
Sbjct: 150 SHGPP--TPQGFFYDMAMPDNRVVKESDWKTLDNRANKIFKEKQSFDRLEVTKENLRKMF 207

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAG 719
           A +     Y D+     V  E   V+       LC G H+ STG++    I+  SS    
Sbjct: 208 AYSKYKLHYIDK----LVTGEKSTVYRCGTLVDLCRGPHIQSTGKVKTFKIMQNSS---- 259

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778
                      A       ++ L+ +       +  +   ++ + E  ++  L  AK +
Sbjct: 260 -----------AYFLGDQNNDSLQRIRGVAFPDKKQMAEHLKFLEEAEKRNHLRIAKEQ 307


>gi|62078811|ref|NP_001014062.1| threonyl-tRNA synthetase, mitochondrial precursor [Rattus
           norvegicus]
 gi|81884372|sp|Q68FW7|SYTM_RAT RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|51259375|gb|AAH79154.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Rattus
           norvegicus]
          Length = 723

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S+ H+L  A    LG+ + +  S  +   L F +   + + S EL ++E    +II    
Sbjct: 139 SSAHVLGAAAEQHLGAVLCRGPSTESGFYLDFFLGKERTVRSTELPTLERICQEIITAAQ 198

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
           P      +R                 +     +     G   S  LC G H+  TG+I  
Sbjct: 199 PFRRLEASRGQLRQLFKDNHFKLHVIEEKVTGTTATVYGCGMSVDLCQGPHLRHTGQIGA 258

Query: 708 LYIVSESS 715
           L +++ SS
Sbjct: 259 LKLLTNSS 266


>gi|294886613|ref|XP_002771785.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239875547|gb|EER03601.1| threonyl-tRNA synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 820

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G +++        +G  +D    +  +   + + IE  ++ I+  
Sbjct: 163 HSSAHILGEAMEQEYGCYLTIGPPL--ENGFYYDGFFGNLKLGPNDYEKIEKRIDSIVKS 220

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS-------SALCGGTH 698
           +      ++ +E+A+   A          +++++S +  DG + S         LC G H
Sbjct: 221 DQKFQRLVVTKEEALELFAYNPF------KLQLISTKVPDGSLTSVYRIGSLVDLCRGPH 274

Query: 699 VSSTGEIMLLYIVSES 714
           +  TG     ++   S
Sbjct: 275 LPRTGIAKAFWVNKNS 290


>gi|308805817|ref|XP_003080220.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
 gi|116058680|emb|CAL54387.1| putative threonyl-tRNA synthetase (ISS) [Ostreococcus tauri]
          Length = 673

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS+ H+L  AL    G+ ++  G  I            + +   +  +I+  +  II 
Sbjct: 122 YWHSSAHVLGEALELEYGADLTI-GPAIEEGFYYDCFLGERTLNPDDTATIKARMEKIIG 180

Query: 645 QNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +       +++R +A+                    ++     G     LC G H+  TG
Sbjct: 181 EKQEFQRIVVSRAEALEMFEENKFKLELIGGLPEDATISCYRCGPMVD-LCRGPHLPDTG 239

Query: 704 EIMLLYIVSESS--IRAGIR-----RIEAIT 727
            +  + +   S    RA +      R+ A+T
Sbjct: 240 HLKAVAVTQCSRAHWRADVTKDPLVRVYAVT 270


>gi|145529349|ref|XP_001450463.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418074|emb|CAK83066.1| unnamed protein product [Paramecium tetraurelia]
          Length = 930

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS++H+L  AL  + G H+   G  I              +T  +   IE   +D+ A  
Sbjct: 161 HSSSHILGSALEEVYGCHLCI-GPAIDGGFFYDCYIGDYKVTQNDYVKIEKAASDLAASK 219

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
                 ++ +++ +          +    +     E      +       LC G H+ +T
Sbjct: 220 QEFQRAVLTKDECLELFGTNPFKRQL---ITNKIPEGAMTTAYKCGNLIDLCTGPHLPNT 276

Query: 703 GEIMLLYIVSESS 715
             +    +   S+
Sbjct: 277 SYVKAFQVTKNSA 289


>gi|293363452|ref|ZP_06610209.1| threonine--tRNA ligase [Mycoplasma alligatoris A21JP2]
 gi|292552972|gb|EFF41725.1| threonine--tRNA ligase [Mycoplasma alligatoris A21JP2]
          Length = 580

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 13/174 (7%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641
            + +NH+ +HLL  A+  +        G  I+ +G  +D    + ++  EL  IE  +  
Sbjct: 4   DIKLNHTTSHLLGAAVEKLYPGVKLGFGPAIS-EGFYYDFEFLEALSDTELSKIEKFMKK 62

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGT 697
           + ++NL +     +            L  +   + + ++    V+          LC G 
Sbjct: 63  LASRNLVMQQVDQSHYSFENKPYKKELYDELVKQGKTITFYALVDPLSKEEIFVDLCAGN 122

Query: 698 HVSSTGEIMLLYIVSESSI-----RAGI--RRIEAITGQRARSHLMGQDEKLKS 744
           H   T +I    +++ S          I   RI   T    +  L    E LK 
Sbjct: 123 HTEDTKKIKNFKLLNLSGAYWRGDSNNIQLTRIYG-TSWDTKEELATYLEILKD 175


>gi|156120539|ref|NP_001095415.1| threonyl-tRNA synthetase, mitochondrial [Bos taurus]
 gi|152941102|gb|ABS44988.1| threonyl-tRNA synthetase-like 1 [Bos taurus]
          Length = 718

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + Q  S        F +   + +  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQLLGAVLCQGPSTECGFYHDFFLGKERTVKGSELPVLERFCQELTAAA 192

Query: 647 LPVVTRIMNREDAIASG-----AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
            P      +R               L+  K       V      G      LC G H+  
Sbjct: 193 QPFRRLEASRAQLRQLFKDNPLKLRLIEEKVTGPTATV-----YGCGMLVDLCRGPHLRH 247

Query: 702 TGEIMLLYIVSESS 715
           TG+I  L ++S SS
Sbjct: 248 TGQIGGLKLLSNSS 261


>gi|195147146|ref|XP_002014541.1| GL19239 [Drosophila persimilis]
 gi|198473694|ref|XP_001356405.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
 gi|194106494|gb|EDW28537.1| GL19239 [Drosophila persimilis]
 gi|198138068|gb|EAL33469.2| GA18821 [Drosophila pseudoobscura pseudoobscura]
          Length = 754

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H++  A+  I G H+          G  +D+      I++ +  ++E  V  I+ +
Sbjct: 188 HSSAHIMGEAMERIYGGHLCYGPPI--ESGFYYDMHLEGEGISTNDYGTMESLVKQIVKE 245

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
                   M + D +          +  +                  LC G HV  TG++
Sbjct: 246 KQNFERLEMKKADLLEMFKYNEFKLRILNEKVTTDRTTVYKCGSLIDLCRGPHVRHTGKV 305

Query: 706 MLLYIVSESS 715
             L I   SS
Sbjct: 306 KALKITKNSS 315


>gi|167536887|ref|XP_001750114.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771443|gb|EDQ85110.1| predicted protein [Monosiga brevicollis MX1]
          Length = 550

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 13/180 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKS 634
           D + R   +  HS+ H+L  A+    G ++         DG  +D+    + ++  + K+
Sbjct: 18  DEEGRD--TFWHSSAHILGLAMEHYFGGNLCYGPPI--KDGFFYDMEMGDRHVSEEDFKT 73

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E           P    I+++E+ +          +        +            LC
Sbjct: 74  LESLATKATKAKYPFQRLIVSKENLLRMFQENPFKQRLIKERIQEAATTVYRCGPLIDLC 133

Query: 695 GGTHVSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            G H+ +TG+I   ++   SS           ++R+ A++    +  L    E L   A 
Sbjct: 134 HGPHIRNTGQIKAFWVHKCSSTYWEGKADAETLQRVYAVSFPD-KKMLKDHKELLAEAAK 192


>gi|260776628|ref|ZP_05885523.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607851|gb|EEX34116.1| predicted metal-dependent hydrolase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 288

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 85/261 (32%), Gaps = 64/261 (24%)

Query: 502 VEEAVSGQKV-EVVFDQTPFYAEA---GGQLGDTGCAIGD-------------------G 538
           V+    GQ    ++ + TPF+  +        D G   G                    G
Sbjct: 21  VQRVELGQDYLYLITEMTPFHPVSHIWPDHPADKGTIDGHVVIDCLVGAVELSSDELYVG 80

Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598
             + +   ++    + VH        L  +  + L +D   ++ LS  HSA H+ + AL+
Sbjct: 81  SAIPVKRDEEGWAFVVVHCLDKSVTGLVAQQEVTLVVDKPYQQALSRGHSAGHIAYLALN 140

Query: 599 TI-------------LGSH-------VSQNGSCITPDGLRFDVTHSKPITS--------- 629
            +                H        +Q  S ++ D         K +           
Sbjct: 141 KVLVENGYWRKEADRKDPHGYYDFNSYAQEASFVSEDKCIDTYRLGKTLRKRGLNSADML 200

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689
           A+L+ I+  VN  IAQ L V     + +  I     AL  ++Y    R    E     + 
Sbjct: 201 ADLEKIQSWVNQQIAQWLTV-----DSDIEIKCCGNALTDSRY---WRCDLGEQNLAEI- 251

Query: 690 SSALCGGTHVSSTGEIMLLYI 710
               CGGTH  +  E   + +
Sbjct: 252 ---PCGGTHAKNLNEYKDIVV 269


>gi|221122393|ref|XP_002164939.1| PREDICTED: similar to threonyl-tRNA synthetase, partial [Hydra
           magnipapillata]
          Length = 801

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 113/366 (30%), Gaps = 61/366 (16%)

Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471
            +D    +   E+ +   +  S G        +       + A +   +D L+ +    E
Sbjct: 12  KVDEKPADLVPEKLQKENKKKSAGSDKKHASNLELDPPPSFIADRIKMFDKLKMA--YDE 69

Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531
           + K   + P           +K ++  G+ ++              TP++   G   G  
Sbjct: 70  EIKAKEKSP-----------IKIVLLDGKEIDGLAW--------QSTPYHIAQGISQG-- 108

Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591
              + D   +      +  +   V     +   L+ E +    + +         HS+ H
Sbjct: 109 ---LADNAVIA-KVNGELWDLDRVLEGDCKIEFLKFEQTEGQQVFW---------HSSAH 155

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  A+    G  +         +G  +D+   K +++ +  ++E  + ++I    P   
Sbjct: 156 ILGEAMERHYGGCLCYGPPI--EEGFYYDMWTEKLVSTHDFGNLETLIKNVIKDKQPFER 213

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
             M +ED +          +  +                  LC G HV  TG++  + + 
Sbjct: 214 LEMKKEDLLKMFEYNEFKLRIINEKITTPTTTVYRCGPLIDLCRGPHVRHTGKVKAMAVT 273

Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
             S                         E L+ +         +     +++ +E++  Q
Sbjct: 274 KNS---------------ATYWEGNKDAETLQRIYGI------SFPN--DKLLKEWKHFQ 310

Query: 772 LIHAKR 777
              AKR
Sbjct: 311 EEAAKR 316


>gi|270009374|gb|EFA05822.1| hypothetical protein TcasGA2_TC008604 [Tribolium castaneum]
          Length = 685

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H+L  AL  + G      G  I            K I++ +   +E+ +  I  + 
Sbjct: 119 HSTAHILGEALERVYGG-CLCYGPPIESGFYYDMFLEDKGISAGDFPYLENLMKQITKEK 177

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
            P     M +ED +          +  +      V+     V+       LC G HV  T
Sbjct: 178 QPFERLEMKKEDLLEMFKYNPFKVRILNE----KVDTPTTTVYRCGPLIDLCRGPHVRHT 233

Query: 703 GEIMLLYIVSESS 715
           G+I  L +   SS
Sbjct: 234 GKIKALKVTKNSS 246


>gi|255071725|ref|XP_002499537.1| predicted protein [Micromonas sp. RCC299]
 gi|226514799|gb|ACO60795.1| predicted protein [Micromonas sp. RCC299]
          Length = 722

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 35/219 (15%)

Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS---------- 584
           I +GI+  +T     A GI   H  + +G L     +    D+  RR L           
Sbjct: 63  IKEGIKF-VTSPWDIAMGI---HKKLAQGSLL--AHVDGQ-DWDMRRPLEGDCSLKLFGF 115

Query: 585 --------INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSI 635
                     HS+ H+L  AL    G+ ++   S    +G  +D     + ++++E   I
Sbjct: 116 DDPEGKELYWHSSAHVLGEALELEYGADLTIGPSI--EEGFYYDCFLGERTLSASETDGI 173

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           +  +  II +  P    +++R +A+          +    +   +            LC 
Sbjct: 174 QKRMEAIIKEKQPFQRIVVSRAEALEMFQENKFKVELISNLPEDATISCYRCGPMVDLCR 233

Query: 696 GTHVSSTGEIMLLYI--VSESSIRAGIR-----RIEAIT 727
           G H+  T  I  + +   S +  RA +      R+ A+T
Sbjct: 234 GPHLPDTAWIKTVSVNQCSRAHWRADVTKDPLVRVYAVT 272


>gi|242791014|ref|XP_002481676.1| threonyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718264|gb|EED17684.1| threonyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 724

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      TP G  +D+     + +  ++   ++   N I  
Sbjct: 133 HSSAHCLGEACELEFGCLLSHGPP--TPQGFFYDMAMPNGRAVLPSDWAPLDKKANQIFK 190

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++E+     A +    KY        VE E   V+       LC G H+ 
Sbjct: 191 ERQSFDRLEVSKENLKKMFAYS----KYKLHYINNLVEGEKSTVYRCGTLVDLCRGPHIQ 246

Query: 701 STGEIMLLYIVSESS 715
           +T +I    I+  SS
Sbjct: 247 NTNKIKAFKIMQNSS 261


>gi|326427807|gb|EGD73377.1| hypothetical protein PTSG_11497 [Salpingoeca sp. ATCC 50818]
          Length = 338

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 8/150 (5%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFD---VTHSKPITSAE 631
           D+    +    HS  H+L  AL  + G  +   +G  +      F    + H + + +  
Sbjct: 103 DWDYGLKEMCWHSGAHVLGAALEEVYGDDILLCDGPPVKRGAGFFYEGHLKHGQTVNTDA 162

Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR---VVSVEYEDGGV 688
           L  +E +++++      +    +  E A+           +  R +     S+       
Sbjct: 163 LAQVEKHMHELCRLQHDLQRIDVTPEQALDVFCDNPFKQHFIHRAQQQGETSISIYKLAS 222

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
               LC G H+ +        I   S+ +A
Sbjct: 223 F-VDLCEGPHIRNLRPFSSKTIALTSTSQA 251


>gi|312384017|gb|EFR28854.1| hypothetical protein AND_02684 [Anopheles darlingi]
          Length = 766

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+   G  I  +G  +D       I++ +   +E  V  I+ +
Sbjct: 108 HSSAHILGEAMEKRYGGHLCY-GPPID-NGFYYDMFLEGSGISNQDYGVLESEVKRIVKE 165

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     M + D +          +  +                  LC G HV +TG++
Sbjct: 166 KQPFERLEMKKSDLLRMFEYNQFKVRILNEKVTTETTTVYRCGPLIDLCRGPHVRNTGKV 225

Query: 706 MLLYIVSESS 715
             L +V  SS
Sbjct: 226 KALKVVKNSS 235


>gi|91087799|ref|XP_967345.1| PREDICTED: similar to RH56418p [Tribolium castaneum]
          Length = 707

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  H+L  AL  + G      G  I            K I++ +   +E+ +  I  + 
Sbjct: 141 HSTAHILGEALERVYGG-CLCYGPPIESGFYYDMFLEDKGISAGDFPYLENLMKQITKEK 199

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSST 702
            P     M +ED +          +  +      V+     V+       LC G HV  T
Sbjct: 200 QPFERLEMKKEDLLEMFKYNPFKVRILNE----KVDTPTTTVYRCGPLIDLCRGPHVRHT 255

Query: 703 GEIMLLYIVSESS 715
           G+I  L +   SS
Sbjct: 256 GKIKALKVTKNSS 268


>gi|146169598|ref|XP_001017218.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila]
 gi|146145134|gb|EAR96973.2| threonyl-tRNA synthetase family protein [Tetrahymena thermophila
           SB210]
          Length = 882

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  AL    G H+   G  +           ++ I+      IE     + ++ 
Sbjct: 172 HSSAHMLGQALELNYGVHLCI-GPPLANGFFYDSYMGNEKISQDNFAEIEKTFAKVASEK 230

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
            P    I+ ++ A+          +          ++  Y+ G +    LC G H+  TG
Sbjct: 231 QPFQRVILTKKQALELFKHNPFKVQLITNKIPDNAITTAYKCGKLID--LCTGPHLPHTG 288

Query: 704 EIMLLYIVSESS-------IRAGIRRIEAIT---GQRARSHLMGQDEKLKS 744
            +    +   S+          G++R+  I     +   +H++ Q+E  K 
Sbjct: 289 YVKAFKVEKNSAAYWLGKNTNDGLQRVYGIAFPSKKELDAHVLRQEELAKR 339


>gi|284045075|ref|YP_003395415.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
 gi|283949296|gb|ADB52040.1| threonyl-tRNA synthetase [Conexibacter woesei DSM 14684]
          Length = 643

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 32/210 (15%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDI 642
           + H   H+L  A+  +        G  I  +G  +D        ++ A+ + IE  + + 
Sbjct: 70  LRHDTAHVLAAAVIDLYPGVKISIGPPI-ENGFYYDFEFPDGTVVSDADFERIEQKMREH 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----------- 691
           +  +   V   ++  +A+           Y   +    V+  D G               
Sbjct: 129 VKADERFVREDVSVGEALERFVRENQP--YKVELIEDLVKNADAGDPVETVSLYTNGPFT 186

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
            LC G H   T  I    +    S+     R +A                L  +      
Sbjct: 187 DLCRGPHGPGTKRIKAFKL---QSVAGAYWRGDA------------SRTMLTRIYGTAFF 231

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           S+ ++   +E + EE +K       R+L+L
Sbjct: 232 SKDDLAAHLERL-EEAKKRDHRRLGRELKL 260


>gi|50294994|ref|XP_449908.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49529222|emb|CAG62888.1| unnamed protein product [Candida glabrata]
          Length = 726

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 29/158 (18%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT-----------HS 624
           D   R      HS+ H+L  A    LG+H+       T DG  +++              
Sbjct: 134 DEGRRV---FWHSSAHVLGEACECNLGAHICLGPP--TDDGFFYEMALKDTLKEDKDAEE 188

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + I+ A+  ++E    ++I +       +M++ED +     +        +  +V  +  
Sbjct: 189 RTISQADFPNLEGVAKNVIKEKQKFERLVMSKEDLLKMFHYSKF------KTYLVQTKIP 242

Query: 685 DGGVHSSALCG-------GTHVSSTGEIMLLYIVSESS 715
           DGG  +   CG       G H+  TG I    ++  SS
Sbjct: 243 DGGSTTVYKCGKLIDLCVGPHIPHTGRIKAFKLLKNSS 280


>gi|241955201|ref|XP_002420321.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
 gi|223643663|emb|CAX41396.1| threonyl-tRNA synthetase, cytoplasmic, putative [Candida
           dubliniensis CD36]
          Length = 706

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVNDII 643
           HS+ H+L  A     G H+S      T DG  +D++ +     +T  +  ++E      I
Sbjct: 131 HSSAHILGEACECHYGCHLSHGPP--TEDGFFYDMSINNGETFVTQGDFGNLEQVATKAI 188

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +        M +E  +          K+   +     +     V+       LC G H+
Sbjct: 189 KEKQKFERLEMTKEQLLKMFHYNKYKVKF---ISDKIPDGTSTTVYRCGPLIDLCVGPHI 245

Query: 700 SSTGEIMLLYIVSESS 715
             +G I    ++  SS
Sbjct: 246 PHSGRIKAFKVLKNSS 261


>gi|114559275|ref|XP_001168898.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 7 [Pan
           troglodytes]
          Length = 636

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 193 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 252

Query: 707 LLYIVSES 714
            L ++S  
Sbjct: 253 GLKLLSAE 260


>gi|307128591|ref|YP_003880621.1| uracil phosphoribosyltransferase [Candidatus Sulcia muelleri CARI]
 gi|306483053|gb|ADM89923.1| uracil phosphoribosyltransferase [Candidatus Sulcia muelleri CARI]
          Length = 640

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIE--DNVN 640
           +  HS++HLL  ++           G  I  +G  +D+   K   S  +   IE     N
Sbjct: 70  AFWHSSSHLLAQSILDFYPKAKLNIGPAIN-NGFYYDIDFGKSFFSEKDFYKIEINMLFN 128

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSSALCGGTH 698
                N  +    +++ +A       +       N +   V++   D  +    LC G H
Sbjct: 129 ASKCFNYELY--YISKSEAKKYYKNNIYKLDILNNIKKNYVTICKHDNFID---LCRGCH 183

Query: 699 VSSTGEIMLLYIVSESSI-------RAGIRRIEAIT 727
           + +T  I  + I++ S +          + RI AI+
Sbjct: 184 IPNTYFIKAVKILNISGVYWKGDKNNKQLTRIYAIS 219


>gi|307169877|gb|EFN62386.1| Threonyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]
          Length = 689

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 19/148 (12%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKS 634
           D + R+     HS+ H+L  A+  I G  +         +G  +D+    K I++ +   
Sbjct: 113 DAEGRQ--VFWHSSAHILGEAMERIYGGCLCYGPPI--ENGFYYDMYIGDKGISNTDFPY 168

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSS 691
           +E+   +I  +  P    +M ++D +          KYN+   R+    +      V+  
Sbjct: 169 LENMYKNIAKEKQPFERLVMTKKDLMEMF-------KYNEFKIRIIAEKIHTPTTTVYKC 221

Query: 692 ----ALCGGTHVSSTGEIMLLYIVSESS 715
                LC G HV  TG+I  L I   SS
Sbjct: 222 GPLIDLCRGPHVRHTGKIKALKITKNSS 249


>gi|317145606|ref|XP_001820926.2| hypothetical protein AOR_1_636144 [Aspergillus oryzae RIB40]
          Length = 355

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 18/207 (8%)

Query: 387 AFKLYDTHGLP-LDIMQDI--LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
            F     +G   +DI  +      RG    D   F + L+E R + +   +   +     
Sbjct: 135 LFSFLSQYGFDGVDIDWEYPGAEERGGRPTDKEDFTKLLQEMRQQFQNKYVITFAAPLAS 194

Query: 444 IW---FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            +   + LK    A  +I           + D+K        D+  GV + ++A V   +
Sbjct: 195 YYLQNYDLKSASEAVDWINVMAYDIHGTWESDKKAAGHTNLTDVNKGVENYLQAGVAPNK 254

Query: 501 IV-EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559
           +V   A  G   E    +T           +    I  G +  + D      G   H   
Sbjct: 255 VVLGTAFYGPGAEGQCVKTA----GYLSYTEIQDIISGGAK-PVFD----QAGSVQHLTW 305

Query: 560 VERGILRTEM--SLVLTIDYQNRRQLS 584
                +  +   ++ + +DY  R+ L 
Sbjct: 306 GGDNWVSYDDPQTIKIKVDYARRKGLR 332


>gi|170780888|ref|YP_001709220.1| hypothetical protein CMS_0444 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155456|emb|CAQ00564.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 85/260 (32%), Gaps = 62/260 (23%)

Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGG---QLGDTGCAIGDGIRLQITD------------- 545
           V++   G +  VV D+T  +        Q  D       G  +++ D             
Sbjct: 17  VDDLADGTRA-VVLDETACHPVDAAWPDQPADRAVLRVRGAGIEVLDCVVGAASTDPAGD 75

Query: 546 ----------VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL- 592
                     V+K A+G      H +     +R   ++ + +D ++RR LS  H+  HL 
Sbjct: 76  AALHVGADVPVKKGADGWSFVAVHVVPGDADVRAGDAVEVAVDPEHRRALSAGHTGCHLA 135

Query: 593 ---LHHALSTILGSHV-----------------SQNGSCITPDGLRFDVTHSKP--ITSA 630
              L  AL       V                 S+ G   + D  R   +  K   + +A
Sbjct: 136 SLALDRALEGAWNKDVPRDALGAPGFDALAIGTSRIGPWSSVDTYRLGKSLRKKGFVPAA 195

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
            L  +E+           V   +     + A+      G     R R    E  DG   +
Sbjct: 196 LLDQLEEVRGR-------VDATLAAWVASGAAARIEREGDLLTSR-RSWVCELPDGT--A 245

Query: 691 SALCGGTHVSSTGEIMLLYI 710
              CGGTHVS   E+  + +
Sbjct: 246 RIPCGGTHVSGLDELASVTV 265


>gi|315123805|ref|YP_004065809.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017527|gb|ADT65620.1| threonyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 134

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HL+  A+ ++        G  I  DG  +D      I   +L  IE  + ++  
Sbjct: 40  IRHSCAHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEEDLVKIEKKMKELAE 98

Query: 645 QNLPVVTRIMNREDAIASG 663
             + ++   + + +A+A  
Sbjct: 99  AKIEILKYEITKNEALAKF 117


>gi|170036087|ref|XP_001845897.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
 gi|167878588|gb|EDS41971.1| threonyl-tRNA synthetase [Culex quinquefasciatus]
          Length = 699

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  A+    G H+         +G  +D+      I++++  ++E +V  I+ +
Sbjct: 133 HSSAHILGEAMEKRYGGHLCYGPPI--ENGFYYDMRLEGAGISNSDYGALETDVKKIVKE 190

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     M + D +          +  +                  LC G HV  TG++
Sbjct: 191 KQPFERLEMKKSDLLKMFEYNEFKCRILNEKVTTETTTVYRCGPLIDLCRGPHVRHTGKV 250

Query: 706 MLLYIVSESS 715
             L +V  SS
Sbjct: 251 KALKVVKNSS 260


>gi|90410878|ref|ZP_01218892.1| hypothetical metal-dependent hydrolase [Photobacterium profundum
           3TCK]
 gi|90328091|gb|EAS44402.1| hypothetical metal-dependent hydrolase [Photobacterium profundum
           3TCK]
          Length = 291

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 57/245 (23%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQITD-------------------- 545
           + V VV D+T F+  +        D G          +T                     
Sbjct: 31  RGVYVVTDRTCFHPVSHIWPDHPADRGTIGLGDRCFDVTGCFTGAVDLATSTLYVGTDIP 90

Query: 546 VQKKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603
           V++   G    V H I E    R   +++L++D   ++ LS  HSA HL   AL+ +L S
Sbjct: 91  VKRDVPGWAFVVVHHIAEDAQWRKGDTVILSVDRAYQQALSRGHSAGHLSSLALNKVLHS 150

Query: 604 HVSQN-------------------GSCITPDGLRFDVTHSKPITSAELKSIEDNVN---- 640
              +                     S ++ D         K +    L + +   N    
Sbjct: 151 DYWRKDASRKDELGHYDFHSYAQQQSIVSEDKSTDTYRLGKTLRKRGLNTADMLANLVAL 210

Query: 641 -DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
            D+I Q L +         + A+      G +  D         E+  +     CGG+H+
Sbjct: 211 TDLINQQLEIWRH------SGAAVVMRREGVQLTDSRYWQCDLGEEEVIEI--PCGGSHI 262

Query: 700 SSTGE 704
            S  E
Sbjct: 263 QSLSE 267


>gi|47226601|emb|CAG08617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 677

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+  + G  +         +G  +D    ++ ++S +   +E+    II
Sbjct: 144 YWHSSAHILGEAMERVYGGCLCYGPPI--ENGFYYDMFLENEGVSSNDFPCLENLCKKII 201

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  P     + +E  +               K       V   Y  G +    LC G H
Sbjct: 202 KEKQPFERLEIKKETLLEMFKYNKFKCRILNEKVTTPTTTV---YRCGPLID--LCRGPH 256

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I   SS
Sbjct: 257 VRHTGKIKALKIHKNSS 273


>gi|294655282|ref|XP_002770111.1| DEHA2B10252p [Debaryomyces hansenii CBS767]
 gi|199429831|emb|CAR65481.1| DEHA2B10252p [Debaryomyces hansenii]
          Length = 733

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVNDII 643
           HS+ H+L  +     G H+S      T DG  +D++ +     +T A+  ++E      I
Sbjct: 154 HSSAHVLGESCECHYGCHLSHGPP--TDDGFFYDMSINNGEGAVTQADFGNLEKVSTKAI 211

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTH 698
            +    V   M +ED +   +      KY  +     +                LC G H
Sbjct: 212 KEKQKFVRLEMTKEDLLKMFSYN----KYKVQFISDKIPDGTSTTVYRCGPLIDLCVGPH 267

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-------QDEKLKSLASFLKV 751
           +  TG+I    ++  SS          + G  A   L           + +     FLK 
Sbjct: 268 IPHTGKIKAFKVLKNSSS-------YFL-GDAANDSLQRVYGISFPDKKLMDEHLKFLKE 319

Query: 752 SQGNVVGRVEEIWE 765
           +      R+ +  E
Sbjct: 320 ASERDHRRIGKEQE 333


>gi|255732025|ref|XP_002550936.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
 gi|240131222|gb|EER30782.1| threonyl-tRNA synthetase [Candida tropicalis MYA-3404]
          Length = 1059

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVNDII 643
           HS+ H+L  A     G H++      T DG  +D++ +     +T A+  S+E      I
Sbjct: 139 HSSAHILGEACECHYGCHLTHGPP--TDDGFFYDMSINNGETAVTQADFPSLEQVATKAI 196

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +        + +E  +          K+   +     +     V+       LC G H+
Sbjct: 197 KEKQKFERLELTKEQLLEMFKYNKYKIKF---ISDKIPDGTSTTVYRCGPLIDLCVGPHI 253

Query: 700 SSTGEIMLLYIVSESS 715
             +G I    ++  S+
Sbjct: 254 PQSGRIKAFKVLKNSA 269


>gi|254569696|ref|XP_002491958.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|238031755|emb|CAY69678.1| Threonyl-tRNA synthetase, essential cytoplasmic protein [Pichia
           pastoris GS115]
 gi|328351547|emb|CCA37946.1| threonyl-tRNA synthetase [Pichia pastoris CBS 7435]
          Length = 712

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 18/139 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP---ITSAELKSIEDNVNDII 643
           HS+ H+L  A     G+H+       T DG  ++++       +T A+  SIE      I
Sbjct: 139 HSSAHVLGEACECHYGAHLCIGPP--TEDGFFYEMSIDNGESFVTQADFPSIEAVAKSAI 196

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-------G 696
            +       ++++ED +   A          +VR++S +  DG   +   CG       G
Sbjct: 197 KEKQKFERLVLSKEDLLKMFAYNKY------KVRIISEKIPDGTASTVYRCGPLIDLCVG 250

Query: 697 THVSSTGEIMLLYIVSESS 715
            H+  TG I  + ++  SS
Sbjct: 251 PHIPHTGRIKAIKVLKNSS 269


>gi|238504300|ref|XP_002383381.1| threonyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
 gi|317138130|ref|XP_001816697.2| threonyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40]
 gi|220690852|gb|EED47201.1| threonyl-tRNA synthetase, putative [Aspergillus flavus NRRL3357]
          Length = 721

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 25/188 (13%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELK 633
           D + R      HS+ H L  A     G  +S      TP G  +D+     + +   +  
Sbjct: 120 DPEGRE--VFWHSSAHCLGEACECEYGCLLSHGPP--TPQGFFYDMAMPDNRVVRETDWP 175

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
           +++ + N +  +        + +E+     A +     Y D+     V  E   V+    
Sbjct: 176 ALDKHANRVFKEKQSFDRLEVTKENLKKMFAYSKYKLHYIDK----LVTGEKSTVYRCGT 231

Query: 692 --ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKL 742
              LC G H+ +TG+I    I+  SS           ++RI  +    A        E L
Sbjct: 232 LVDLCRGPHIQNTGKIKTFKIMQNSSAYFLGDQSNDSLQRIRGV----AFPDKKQMQEHL 287

Query: 743 KSLASFLK 750
           K L    K
Sbjct: 288 KFLEEAEK 295


>gi|83764551|dbj|BAE54695.1| unnamed protein product [Aspergillus oryzae]
          Length = 717

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 25/188 (13%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELK 633
           D + R      HS+ H L  A     G  +S      TP G  +D+     + +   +  
Sbjct: 116 DPEGRE--VFWHSSAHCLGEACECEYGCLLSHGPP--TPQGFFYDMAMPDNRVVRETDWP 171

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-- 691
           +++ + N +  +        + +E+     A +     Y D+     V  E   V+    
Sbjct: 172 ALDKHANRVFKEKQSFDRLEVTKENLKKMFAYSKYKLHYIDK----LVTGEKSTVYRCGT 227

Query: 692 --ALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKL 742
              LC G H+ +TG+I    I+  SS           ++RI  +    A        E L
Sbjct: 228 LVDLCRGPHIQNTGKIKTFKIMQNSSAYFLGDQSNDSLQRIRGV----AFPDKKQMQEHL 283

Query: 743 KSLASFLK 750
           K L    K
Sbjct: 284 KFLEEAEK 291


>gi|213161901|ref|ZP_03347611.1| threonyl-tRNA synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 530

 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 53/130 (40%), Gaps = 15/130 (11%)

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGV 688
            +++++E  ++++  +N  V+ + ++  +A  +      G  Y   +   ++ ++D  G+
Sbjct: 3   EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFVKR--GESYKVSILDENIAHDDKPGL 60

Query: 689 HSSA----LCGGTHVSSTGEIMLLYIVSES-------SIRAGIRRIEAITGQRARSHLMG 737
           +       +C G HV +        ++  +       S    ++RI   T    +  L  
Sbjct: 61  YHHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYG-TAWADKKALNA 119

Query: 738 QDEKLKSLAS 747
             ++L+  A 
Sbjct: 120 YLQRLEEAAK 129


>gi|254580109|ref|XP_002496040.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
 gi|238938931|emb|CAR27107.1| ZYRO0C09086p [Zygosaccharomyces rouxii]
          Length = 716

 Score = 48.5 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 24/145 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT---------HSKPITSAELKSIED 637
           HS+ H+L  A    LG+H+       T DG  +D+            K ++ A+  ++E 
Sbjct: 133 HSSAHVLGEACECNLGAHICFGPP--TDDGFFYDMAVRDSLNPKAEEKTVSQADFPNLEG 190

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-- 695
              + I Q       +M +ED +   + +        +  ++  +  DGG  +   CG  
Sbjct: 191 VAKNAIKQKQKFERLLMTKEDLLKMFSYSKY------KTYLIQTKVPDGGSSTVYRCGPL 244

Query: 696 -----GTHVSSTGEIMLLYIVSESS 715
                G H+  TG I    I+  S+
Sbjct: 245 IDLCMGPHIPHTGRIKAFKILKNSA 269


>gi|237844903|ref|XP_002371749.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
 gi|211969413|gb|EEB04609.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii ME49]
          Length = 844

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 57/141 (40%), Gaps = 16/141 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNVND 641
               HS+ H+L  A+    G+ ++   +    +G  +D        + E    +E     
Sbjct: 224 HVFWHSSAHILGQAIEATFGAQLTVGPAL--TNGFYYDAYMGDAKVTEESYGRLEAAAAA 281

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG------ 695
           +I ++      + ++ +A+   A          +V++++ +  + G+ +   CG      
Sbjct: 282 VIKEDQAFRRLVCSKAEALELFADNPF------KVQLIASKIPEHGLTTVYCCGSLVDLC 335

Query: 696 -GTHVSSTGEIMLLYIVSESS 715
            G H+ STG++    ++  S+
Sbjct: 336 RGPHIPSTGKVKAFQVIKHSA 356


>gi|193084083|gb|ACF09753.1| alanyl-tRNA synthetase domain protein [uncultured marine group III
           euryarchaeote AD1000-40-D7]
          Length = 108

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA--------LLGTKYNDRVRVVSVE 682
           E+  + D  N+ IA+++PV      R D   +             L  K   R+RV+S+ 
Sbjct: 5   EIDDLIDLTNEYIAKDIPVKISEAKRSDLEGNPEIRSSMSSGLWKLLPKSVTRLRVISI- 63

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725
               G      C GTHV S  EI  +  V   +  A  +R+  
Sbjct: 64  ----GEIDVCPCAGTHVRSLKEIGKVEFVKRDNKGAKKQRLTY 102


>gi|291398043|ref|XP_002715638.1| PREDICTED: threonyl-tRNA synthetase 2, mitochondrial [Oryctolagus
           cuniculus]
          Length = 718

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 46/129 (35%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + +  +EL  +E    +  A  
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPSTECGFYHDFFLGKERTVQGSELPVLERICQEFAASA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 193 QPFRRLEASRDQLRQLFKDNPFKLHVIEEKVTGPQATVYGCGTLVDLCRGPHLRHTGQIG 252

Query: 707 LLYIVSESS 715
            + +++ SS
Sbjct: 253 EIKLLTNSS 261


>gi|156120825|ref|NP_001095559.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Bos taurus]
 gi|189083595|sp|A6QNM8|SYTC2_BOVIN RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|151556799|gb|AAI48907.1| TARSL2 protein [Bos taurus]
 gi|296475416|gb|DAA17531.1| threonyl-tRNA synthetase-like 2 [Bos taurus]
          Length = 724

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 66/212 (31%), Gaps = 29/212 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VT 622
            L  + ++ L        +    HS+ H+L  AL    G  +    S        +D   
Sbjct: 209 PLEGDATVELLTFEDEEARAVYWHSSAHVLGEALELHYGGLL--CCSPPGDGSFHYDVYL 266

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVR 677
             + ++SAEL  +E     II +  P     ++ +  +           +L  K      
Sbjct: 267 EDRAVSSAELPVLESMCQAIIKEQQPFERLEVSTKVLLDLFKYNKFKCRILKEKVATPTT 326

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            V             LC G HV  TG I ++ I   S                A      
Sbjct: 327 TVYRCGP-----LVELCKGPHVRHTGTIKVIKIFKNS---------------LAYWADNP 366

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           + E L+ +   +       +   EE+ EE R 
Sbjct: 367 EMEMLQRVYG-VSFPDEQRMAAWEELQEEARA 397


>gi|126313772|ref|XP_001370758.1| PREDICTED: similar to Threonyl-tRNA synthetase-like 1 [Monodelphis
           domestica]
          Length = 717

 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A   +L + + +  S          +  ++ +  +EL  +E     I+A  
Sbjct: 131 HSSAHVLGAAAEHLLSALLCRGPSTSCGFYHDIALQGNRTVRGSELPILEQTCQRIVAAA 190

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P    + +RE             +  +      +    G   S  LC G H+  TG+I 
Sbjct: 191 HPFRRLVASREQLCQLFKDNPFKLQLIEDKVKEQMATVYGCGTSVDLCKGPHLRHTGQIG 250

Query: 707 LLYIV 711
           +L ++
Sbjct: 251 VLKLL 255


>gi|3617770|emb|CAA74705.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 4/144 (2%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAEL 632
             D    R  ++ HS+ H+L  AL    G  +         +G  +D  + +  ++    
Sbjct: 135 KFDSDKGRD-TLWHSSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGFYGELGLSDNHF 193

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSS 691
            SIE        +  P     + ++ A+   +      +  N     +++     G    
Sbjct: 194 PSIEAGAAKAAKEAQPFERIEVTKDQALEMFSENNFKVELINGLPADMTITVYRCGP-LV 252

Query: 692 ALCGGTHVSSTGEIMLLYIVSESS 715
            LC G H+ +T  +     +  SS
Sbjct: 253 DLCRGPHIPNTSFVKAFKCLRASS 276


>gi|196000905|ref|XP_002110320.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
 gi|190586271|gb|EDV26324.1| hypothetical protein TRIADDRAFT_22327 [Trichoplax adhaerens]
          Length = 603

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 25/142 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQ---NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643
           HS++HLL +A+  + GS V     NG  +           +  +   +L  +E    D++
Sbjct: 74  HSSSHLLGYAMEKLYGSEVPVQLCNGPPLE--------QGNVSLPEGDLNKLEKIAVDLV 125

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-------G 696
            +NL      +    A+          +YN     +  + + G   ++  CG       G
Sbjct: 126 KENLSFERIELTINAALEMF-------RYNPYKIEIIKKLDPGDTITAYKCGDFIDLCRG 178

Query: 697 THVSSTGEIMLLYIVSESSIRA 718
            H+  TG I  + +  ESS+  
Sbjct: 179 PHLPRTGMIKAIAMTKESSVHK 200


>gi|30690426|ref|NP_198035.2| threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)
           [Arabidopsis thaliana]
 gi|27735258|sp|O04630|SYTM_ARATH RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; Flags:
           Precursor
 gi|332006227|gb|AED93610.1| threonyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 709

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 4/144 (2%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAEL 632
             D    R  ++ HS+ H+L  AL    G  +         +G  +D  + +  ++    
Sbjct: 135 KFDSDKGRD-TLWHSSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGFYGELGLSDNHF 193

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSS 691
            SIE        +  P     + ++ A+   +      +  N     +++     G    
Sbjct: 194 PSIEAGAAKAAKEAQPFERIEVTKDQALEMFSENNFKVELINGLPADMTITVYRCGP-LV 252

Query: 692 ALCGGTHVSSTGEIMLLYIVSESS 715
            LC G H+ +T  +     +  SS
Sbjct: 253 DLCRGPHIPNTSFVKAFKCLRASS 276


>gi|189501972|ref|YP_001957689.1| threonyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497413|gb|ACE05960.1| hypothetical protein Aasi_0559 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 644

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 25/199 (12%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + ++ L        + +  HS+ HL+  AL ++        G  I  +G  +D+  
Sbjct: 54  PITEDAAVKLLTWQDEDGKKAFWHSSAHLMAEALESLYPGIKLGIGPAI-ANGFYYDIDF 112

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
                 A  L  IE+ + ++  QN      ++N+  AI+         K  D  +V  +E
Sbjct: 113 GDYDFDATHLPRIEEKMLELARQNNLYQGIVVNKPAAIS------FFQKKGDPYKVELLE 166

Query: 683 YEDGGVHS-------SALCGGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAIT- 727
               G  +       + LC G H+  TG I  + +++ S            + RI  IT 
Sbjct: 167 GLQDGSITFYKHGNFTDLCRGPHIPHTGFIKAVKLLNISGAYWRGNEKNKQLTRIYGITF 226

Query: 728 --GQRARSHLMGQDEKLKS 744
              +  +++L   +E  K 
Sbjct: 227 PQQKELKAYLELLEEAQKR 245


>gi|149499809|ref|XP_001513531.1| PREDICTED: similar to threonyl-tRNA synthetase-like 2, partial
           [Ornithorhynchus anatinus]
          Length = 677

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VT 622
            L  + +L L        Q    HS+ H+L  A+    G  +         +G  +D   
Sbjct: 86  PLEGDSTLELLTFENEEAQAVYWHSSAHILGEAMENYYGGCLCYGPPI--ENGFYYDMFL 143

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
             + ++S E  S+E++   II +  P     +++E  +               K +    
Sbjct: 144 EDRGVSSTEFPSLENSCKAIIKEKQPFERLEISKEILLDMFKYNKFKCRILNEKVDTPTT 203

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I+  SS
Sbjct: 204 TV---YRCGPLID--LCRGPHVRHTGKIKTLKILKNSS 236


>gi|54400362|ref|NP_001005932.1| threonyl-tRNA synthetase, cytoplasmic isoform 2 [Danio rerio]
 gi|53734186|gb|AAH83525.1| Zgc:92586 [Danio rerio]
          Length = 624

 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITS 629
           + L  D +   Q    HS+ H++  A+  + G  +         +G  +D    ++ ++S
Sbjct: 135 VFLKFDDEE-AQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLDNEGVSS 191

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYE 684
            +   +E+    II +  P     + +E  +               K       V   Y 
Sbjct: 192 NDFPCLENLCKKIIKEKQPFERLEVKKETLLEMFKYNKFKCRILNEKVTTPTTTV---YR 248

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            G +    LC G HV  TG+I  + I   SS
Sbjct: 249 CGPLID--LCRGPHVRHTGKIKAMKIHKNSS 277


>gi|90961470|ref|YP_535386.1| threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
 gi|122993083|sp|Q1WUN2|SYT_LACS1 RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|90820664|gb|ABD99303.1| Threonyl-tRNA synthetase [Lactobacillus salivarius UCC118]
          Length = 649

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 81/201 (40%), Gaps = 9/201 (4%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D G    +  + + I+  +K   G    + +     L+ + S+ +     N
Sbjct: 8   FPDNSVKEFDAGVTTAEIAKSISISLAKKAVAGKVDGNFVDLNQPLKEDGSIEIITKDSN 67

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDN 638
              + +  +A  +L +AL  +  +     G  +T  G  FD  +S+   +  + + I   
Sbjct: 68  DGLVVLWRTAAQVLANALHELYPNMKFGMG-DVTEHGFYFDTDNSESQVAETDFEKISQK 126

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVVSVEYEDGGVHSSALC 694
           +++II  NLP+     + E+A+   +      +      ++     V Y+ G        
Sbjct: 127 MSEIIKANLPIERVEFSEEEALNLVSGDEYQEELVRDVANKNNGRVVAYKQGDFIDIT-- 184

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G  +SSTGE+ +  ++S + 
Sbjct: 185 DGVVLSSTGEVKIFKLLSVAG 205


>gi|218515655|ref|ZP_03512495.1| alanyl-tRNA synthetase protein [Rhizobium etli 8C-3]
          Length = 131

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 20/125 (16%)

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668
           G+ +  +  R D   S+ I   E   +   + +++ QN        +   A+     A  
Sbjct: 6   GAAVGEEESRIDFDMSETIDKDE---VTARLMELVGQN-------PSGLSAMDHRRRAWR 55

Query: 669 GTKYNDRVRVVSVEYEDGGV----------HSSALCGGTHVSSTGEIMLLYIVSESSIRA 718
               +   R+ +  +  GG             S  CGGTHVS T E+  ++I        
Sbjct: 56  PIPISSNRRMCARRWGSGGSASSALGKNSSIDSQPCGGTHVSETQEVGQIHIAKIEKKGK 115

Query: 719 GIRRI 723
             RR 
Sbjct: 116 ENRRF 120


>gi|15081626|gb|AAK82468.1| AT5g26830/F2P16_90 [Arabidopsis thaliana]
 gi|29028762|gb|AAO64760.1| At5g26830/F2P16_90 [Arabidopsis thaliana]
          Length = 676

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 4/144 (2%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAEL 632
             D    R  ++ HS+ H+L  AL    G  +         +G  +D  + +  ++    
Sbjct: 102 KFDSDKGRD-TLWHSSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGFYGELGLSDNHF 160

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSS 691
            SIE        +  P     + ++ A+   +      +  N     +++     G    
Sbjct: 161 PSIEAGAAKAAKEAQPFERIEVTKDQALEMFSENNFKVELINGLPADMTITVYRCGP-LV 219

Query: 692 ALCGGTHVSSTGEIMLLYIVSESS 715
            LC G H+ +T  +     +  SS
Sbjct: 220 DLCRGPHIPNTSFVKAFKCLRASS 243


>gi|311897198|dbj|BAJ29606.1| hypothetical protein KSE_38090 [Kitasatospora setae KM-6054]
          Length = 297

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 73/254 (28%), Gaps = 49/254 (19%)

Query: 502 VEEAVSGQKVEVVFDQTPFYA---EAGGQLGDTGCAIGDGIRLQITDV------------ 546
           V     G+   VV   TPF+        Q  D G    DG    + D             
Sbjct: 24  VRALPDGRTA-VVTAATPFHPVDHTWPDQPADHGTLTVDGTAHPVVDCLTGAYGPDGEFA 82

Query: 547 ----------QKKAEGIFVHHAIV-ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
                      ++   + +H       G      +  L +D   R +LS  H+  HLL  
Sbjct: 83  AGADIPVRRGDEEWAWLVLHVLPAGALGPEAVGRTAELAVDADRRARLSAAHTGCHLLAL 142

Query: 596 ------------------ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
                             AL       ++ + S +            K +       IE 
Sbjct: 143 ALNAALAPRWRKDPGRADALGHPDFDSLAMDASVMDTAASTDTYRLGKSLKKKGFT-IEA 201

Query: 638 NVND-IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL--C 694
                 +A  LP +T  +N   A    A A +G +           +       +A   C
Sbjct: 202 TDTLPALADALPALTADVNARLAAWVAAEAPVGIEAPGPELTARRRWHADLPEGTAAIAC 261

Query: 695 GGTHVSSTGEIMLL 708
           GGTH+   GE+  L
Sbjct: 262 GGTHLHHLGELTGL 275


>gi|218563696|ref|NP_001116258.1| threonyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio]
 gi|158253608|gb|AAI54372.1| Zgc:92586 protein [Danio rerio]
          Length = 718

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITS 629
           + L  D +   Q    HS+ H++  A+  + G  +         +G  +D    ++ ++S
Sbjct: 135 VFLKFDDEE-AQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLDNEGVSS 191

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYE 684
            +   +E+    II +  P     + +E  +               K       V   Y 
Sbjct: 192 NDFPCLENLCKKIIKEKQPFERLEVKKETLLEMFKYNKFKCRILNEKVTTPTTTV---YR 248

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            G +    LC G HV  TG+I  + I   SS
Sbjct: 249 CGPLID--LCRGPHVRHTGKIKAMKIHKNSS 277


>gi|37524213|ref|NP_927557.1| hypothetical protein plu0192 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783636|emb|CAE12487.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 299

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 87/268 (32%), Gaps = 52/268 (19%)

Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG---GQLGDTGCAIGDGIRLQITDVQ---- 547
           +  +  I+E         ++   +PFY +      QL D G        L +T V     
Sbjct: 26  LTLESNIIEVMKYESGTLLITQDSPFYPKNYKWPDQLHDNGIISIGDKELAVTKVYTAGL 85

Query: 548 ---------------------KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
                                  A  +   H I ER ++    ++ L+++ + R ++S  
Sbjct: 86  IDGLLYIDQEITKQTTSPEKIMPAHYLPDLHGISERDLI--GKTVTLSVNDETRYKVSAA 143

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV------- 639
           HS  H +  A++     H+         D L         I  + +  ++          
Sbjct: 144 HSMAHFMSLAVNKATH-HIWSKVY--DTDDLGNYNLDKAAIYQSSITELKSVDIYRFGKS 200

Query: 640 --------NDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
                   N +I     +   + N   + ++ GA   +  K  +       +        
Sbjct: 201 IKKKGFDKNILIKNLDKINREVNNTLNNWLSQGAEITIEYKSKEINDTRLWKSTIDSKVV 260

Query: 691 SALCGGTHVSSTGEIMLLYI---VSESS 715
           +  CGGTH+++  E+  + +   + ES+
Sbjct: 261 TIPCGGTHINNINEVKDVNVEIKIGESA 288


>gi|254506740|ref|ZP_05118880.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
 gi|219550321|gb|EED27306.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
          Length = 291

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 78/256 (30%), Gaps = 63/256 (24%)

Query: 507 SGQKVEVVFDQTPFYAEA---GGQLGDTGCAIGD-------------------GIRLQIT 544
             + + VV D+TPF+  +        D G   G                    G  + + 
Sbjct: 27  EEELLYVVTDKTPFHPVSHIWPDHPADRGQLNGCPVVDCQVGAVELATNELYVGQAIPVK 86

Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604
             +     + VH        L    ++ L +D   +  LS  HSA H+ + AL+ +L   
Sbjct: 87  RNEAGWAFVVVHCLNKGVLELSVGENVELNVDKHYQDALSRGHSAGHIAYLALNKVLVEG 146

Query: 605 VSQ--------------------NGSCITPDGLRFDVTHSKPITS---------AELKSI 635
                                    S +T D         K +           A+LKSI
Sbjct: 147 QYWRKDADRKDPHGYYDFNSYAQETSFVTEDRCLDKYRLGKTLRKRGLNSADVVADLKSI 206

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E  VN+ +          +     +     AL  ++Y    R    E +   +     CG
Sbjct: 207 ESRVNEQVRL-----WLTLPSSIEVFCDGDALTDSRY---WRCDLNEAQLAEI----PCG 254

Query: 696 GTHVSSTGEIMLLYIV 711
           GTH +S      + + 
Sbjct: 255 GTHATSLDVYEQISVT 270


>gi|122891384|emb|CAM13348.1| novel prtoein similar to vertebrate threonyl-tRNA synthetase (TARS,
           zgc:92586) [Danio rerio]
          Length = 718

 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITS 629
           + L  D +   Q    HS+ H++  A+  + G  +         +G  +D    ++ ++S
Sbjct: 135 VFLKFDDEE-AQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLDNEGVSS 191

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYE 684
            +   +E+    II +  P     + +E  +               K       V   Y 
Sbjct: 192 NDFPCLENLCKKIIKEKQPFERLEVKKETLLEMFKYNKFKCRILNEKVTTPTTTV---YR 248

Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            G +    LC G HV  TG+I  + I   SS
Sbjct: 249 CGPLID--LCRGPHVRHTGKIKAMKIHKNSS 277


>gi|221480967|gb|EEE19381.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii GT1]
 gi|221501688|gb|EEE27452.1| threonyl-tRNA synthetase, putative [Toxoplasma gondii VEG]
          Length = 844

 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 56/141 (39%), Gaps = 16/141 (11%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE-LKSIEDNVND 641
               HS+ H+L  A+    G+ ++   +    +G  +D        + E    +E     
Sbjct: 224 HVFWHSSAHILGQAIEATFGAQLTVGPAL--TNGFYYDAYMGDAKVTEESYGRLEAAAAA 281

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG------ 695
           +I ++      + ++ +A+   A          +V++++ +  + G+ +   CG      
Sbjct: 282 VIKEDQAFRRLVCSKAEALELFADNPF------KVQLIASKIPEHGLTTVYCCGSLVDLC 335

Query: 696 -GTHVSSTGEIMLLYIVSESS 715
            G H+ STG++    +   S+
Sbjct: 336 RGPHIPSTGKVKAFQVTKHSA 356


>gi|302810763|ref|XP_002987072.1| hypothetical protein SELMODRAFT_425880 [Selaginella moellendorffii]
 gi|300145237|gb|EFJ11915.1| hypothetical protein SELMODRAFT_425880 [Selaginella moellendorffii]
          Length = 105

 Score = 47.8 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 202 NLVFMQFEQQN--KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259
           N  F  F+     + +   + + + DTG+GLERMA +LQ+ ++    ++    ++     
Sbjct: 9   NFSFRDFKHDAAWELDFKTVKQKNTDTGLGLERMAKILQKISSILSSNVLLSWLENYTAA 68

Query: 260 TGMKYEGNNIVNHRVIVDHLRS 281
            G K         +VI DHLR+
Sbjct: 69  DGTKAY------LKVIGDHLRA 84


>gi|328778641|ref|XP_395662.3| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like isoform 1
           [Apis mellifera]
          Length = 718

 Score = 47.8 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 17/137 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L   +  + G  +         +G  +D     K I++ +   +E     I+  
Sbjct: 151 HSSAHILGETMERVYGGCLCYGPPI--ENGFYYDMYLDDKGISNLDFPFLESLYKSIVKD 208

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYND-RVRVV--SVEYEDGGVHSS----ALCGGTH 698
             P     M +ED +          KYN+ ++R++   +      V+       LC G H
Sbjct: 209 KQPFERLEMTKEDLLEMF-------KYNEFKIRIINEKIHTPTTTVYRCGPLIDLCRGPH 261

Query: 699 VSSTGEIMLLYIVSESS 715
           +  TG++  + I   SS
Sbjct: 262 IRHTGKVKAIKITKNSS 278


>gi|328710126|ref|XP_001950747.2| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like
           [Acyrthosiphon pisum]
          Length = 714

 Score = 47.8 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 2/143 (1%)

Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632
           L ID +  +++   HS+ H+L  A+  I G      G  I           +K +++ + 
Sbjct: 134 LKIDNEEAQKV-FWHSSAHMLGEAMERIYGG-CLCYGPPIEGGFYYDMFIENKGVSNFDF 191

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E+ V  I+ +  P     +++ED +          +  +                  
Sbjct: 192 PVMENLVKQIVKEKQPFERLEVSKEDLLEMFKYNEFKVRILNEKVTTPTTTIYRCGPLID 251

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G H+  TG++    ++  S+
Sbjct: 252 LCRGPHIRHTGKVKAFKVIKNSA 274


>gi|320590732|gb|EFX03175.1| threonyl-tRNA synthetase [Grosmannia clavigera kw1407]
          Length = 752

 Score = 47.8 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 22/168 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-- 621
            L  +  + L     +  +    HS+ H+L  A     G H+       T +G  +D   
Sbjct: 100 PLEADAQVSLLDFEDDEAKQVYWHSSAHILGEAAEKAFGCHLCFGPP--TDEGFFYDFGM 157

Query: 622 ---------THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
                     H   +T  + K +   ++ I+ +  P    +M + D +          KY
Sbjct: 158 PAEDGQGRPNHHSTVTDDDHKRLSSLMDGIVRERQPFERLVMTKADLLEMFKFN----KY 213

Query: 673 NDRVRVVSVEYEDGGVHSSA-----LCGGTHVSSTGEIMLLYIVSESS 715
              +    +                LC G HV  T  I    ++  S+
Sbjct: 214 KQVLINSKIPDGTSTTVYRCGPLIDLCRGPHVVDTSRIKAFAVLKHSA 261


>gi|219113513|ref|XP_002186340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583190|gb|ACI65810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 766

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDIIAQ 645
           HS+ H++  AL  + G  ++         G  +D    K      +   +E  V  II Q
Sbjct: 200 HSSAHMMGEALEHLYGCKLTIGPPL--AGGFYYDSYMGKDAFREEDYSPVEGEVGKIIKQ 257

Query: 646 NLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
                  ++ +E+ +   A          TK  D  R    +  D       LC G H+S
Sbjct: 258 KQKFERLVITKEEGLELFADNPFKVNILTTKVPDGSRTTVYKCGDL----IDLCRGPHLS 313

Query: 701 STGEIMLLYIVSESS 715
            TG++        S+
Sbjct: 314 HTGKVKAFAATRHSA 328


>gi|317471544|ref|ZP_07930893.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316900979|gb|EFV22944.1| threonyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 539

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 22/162 (13%)

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
             P T  +L+ IE  +  I+ + L +      RE+AIA          Y   +     E 
Sbjct: 4   DTPFTQDDLEKIEAEMKKIVKEGLQITCFTKPREEAIAF--MKEQNEPYKVELIEDLPED 61

Query: 684 EDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
                +       LC G H+ +T  +    + S             + G  A      ++
Sbjct: 62  SVISFYQQGEFIDLCAGPHLMTTKPVKAFKLTS-------------LAG--AYWRGNEKN 106

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           + L  +       +  +   +  + EE +K       ++L L
Sbjct: 107 QMLTRIYGTAFAKKAELKDYLT-MMEEAKKRDHRKLGKELGL 147


>gi|45185649|ref|NP_983365.1| ACL039Wp [Ashbya gossypii ATCC 10895]
 gi|44981367|gb|AAS51189.1| ACL039Wp [Ashbya gossypii ATCC 10895]
          Length = 724

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 27/156 (17%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA----- 630
           +   R      HSA H+L  A    LG+H+       T DG  ++      +        
Sbjct: 135 NEGRRV---FWHSAAHVLGEACECNLGAHICLGPP--TDDGFFYEFACKDSMDPDAPERT 189

Query: 631 ----ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
               +  ++E      I +       +M +ED +     +        +  +V  +  DG
Sbjct: 190 VSQADFPNLETVAKQAIKEKQRFERLVMTKEDLLKMFHYSKY------KTYLVQTKIPDG 243

Query: 687 GVHSS-------ALCGGTHVSSTGEIMLLYIVSESS 715
           G  +         LC G H+  TG I    ++  SS
Sbjct: 244 GSTTVYRSGKLIDLCVGPHIPHTGRIKAFKLLKNSS 279


>gi|328774228|gb|EGF84265.1| hypothetical protein BATDEDRAFT_8061 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 52/167 (31%), Gaps = 15/167 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS  HLL  AL +  G          T  G  +D          E   I      +  Q+
Sbjct: 6   HSTAHLLGWALESHYGDDCLLTNGPATDQGFFYDSLL------IEGGEIRTKQQKVSTQH 59

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           L      + R+ A    A +     Y  ++                LC G HV +T  I 
Sbjct: 60  LAFTCIQVTRDVAARMFAYSPFKLSYLSKIPASETVSLYRCGDFIDLCRGPHVLNTKAIN 119

Query: 707 LLYIVSESSIR---------AGIRRIEAITGQRARSHLMGQDEKLKS 744
            + ++   + +         + +  I   +G+  R   + + E  K 
Sbjct: 120 KVKLLHTGASQWQTISPHSLSRVSGISFSSGKALREWTLQRQEASKR 166


>gi|189091896|ref|XP_001929781.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803058|emb|CAD60761.1| unnamed protein product [Podospora anserina]
 gi|188219301|emb|CAP49281.1| unnamed protein product [Podospora anserina S mat+]
          Length = 783

 Score = 47.4 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +   G  +  +G  +++       + S +   +E+ V+ ++ 
Sbjct: 149 HSSAHILGEACERRFGCSLCI-GPPVD-NGFYYEMALPDGAAVQSTDWAPLENIVSKVVK 206

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-----ALCGGTHV 699
           +  P     M++ED +   A      KY   +    +E               LC G HV
Sbjct: 207 EKQPFQRLEMSKEDLLKMFAYN----KYKQHIIKDKIEDGTKTTVYRNGPLIDLCRGPHV 262

Query: 700 SSTGEIMLLYIVSESS 715
             TG I    I+  SS
Sbjct: 263 PDTGRIEAFAIMKNSS 278


>gi|301300332|ref|ZP_07206537.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852068|gb|EFK79747.1| threonine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 649

 Score = 47.4 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 81/201 (40%), Gaps = 9/201 (4%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D G    +  + + I+  +K   G    + +     L+ + S+ +     N
Sbjct: 8   FPDNSVKEFDAGVTTAEIAKSISISLAKKAVAGKVDGNFVDLNQPLKEDGSIEIITKDSN 67

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDN 638
              + +  +A  +L +AL  +  +     G  +T  G  FD  +S+   +  + + I   
Sbjct: 68  DGLVVLWRTAAQVLANALHELYPNMKFGLG-DVTEHGFYFDTDNSEGQVAETDFEKISQK 126

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVVSVEYEDGGVHSSALC 694
           +++II  NLP+     + E+A+   +      +      ++     V Y+ G        
Sbjct: 127 MSEIIKANLPIERVEFSEEEALNLVSGDEYQEELVRDVANKNNGRVVAYKQGDFIDIT-- 184

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G  +SSTGE+ +  ++S + 
Sbjct: 185 DGVVLSSTGEVKIFKLLSVAG 205


>gi|227890560|ref|ZP_04008365.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
 gi|227867498|gb|EEJ74919.1| threonyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741]
          Length = 649

 Score = 47.4 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 81/201 (40%), Gaps = 9/201 (4%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D G    +  + + I+  +K   G    + +     L+ + S+ +     N
Sbjct: 8   FPDNSVKEFDAGVTTAEIAKSISISLAKKAVAGKVDGNFVDLNQPLKEDGSIEIITKDSN 67

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDN 638
              + +  +A  +L +AL  +  +     G  +T  G  FD  +S+   +  + + I   
Sbjct: 68  DGLVVLWRTAAQVLANALHELYPNMKFGLG-DVTEHGFYFDTDNSEGQVAETDFEKISQK 126

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVVSVEYEDGGVHSSALC 694
           +++II  NLP+     + E+A+   +      +      ++     V Y+ G        
Sbjct: 127 MSEIIKANLPIERVEFSEEEALNLVSGDEYQEELVRDVANKNNGRVVAYKQGDFIDIT-- 184

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G  +SSTGE+ +  ++S + 
Sbjct: 185 DGVVLSSTGEVKIFKLLSVAG 205


>gi|308160139|gb|EFO62643.1| Threonyl-tRNA synthetase [Giardia lamblia P15]
          Length = 695

 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 27/209 (12%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDN 638
           R +    HS+ HLL +AL     +H+  +G  I           +S  +    L  ++  
Sbjct: 95  RAREVFWHSSAHLLGYALEKTFQAHLG-HGPAIDSGFFYDAFFENSLKMEPESLIQLDKA 153

Query: 639 VNDIIAQ------NLPV---VTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGV 688
             +I+ Q      + PV       + +++A+     + L     +D V+   +       
Sbjct: 154 AAEIVKQAAAAPSDSPVRRFTRLEVTKQEALDLFSYSKLKSELISDHVQDGEMCSVYQCG 213

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G H+   G I     +  S                A        E ++ + + 
Sbjct: 214 DFVDFCRGPHIPDLGLIQAFKCMYSS---------------AAYFKGDQNRESMQRVYAV 258

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
              S+  +   +E + E  R+     AK 
Sbjct: 259 AFPSKDQLDKHIELLEEAKRRDHRNLAKE 287


>gi|241678425|ref|XP_002412596.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
 gi|215506398|gb|EEC15892.1| threonyl-tRNA synthetase, putative [Ixodes scapularis]
          Length = 692

 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 12/170 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA--ELKSIEDNVNDIIA 644
           HS+ H++  AL  I G  +          G  +D+        +  +  SIE  +  I+ 
Sbjct: 125 HSSAHIMGEALERIYGGCLCYGPPI--EGGFYYDMHLDGGQGVSAVDHPSIEQLMRSIVK 182

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +  P     + +E+ +          +                     LC G HV  TG+
Sbjct: 183 EKQPFERLELPKEELLRMFQYNPFKVRILQEKVTTPTTTVYRCGPLIDLCRGPHVRHTGK 242

Query: 705 IMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           +  L +   SS           ++R+  I+   A   L    +  +  A 
Sbjct: 243 VKALQVTKNSSAYWEGKADAEALQRVYGISFPDA-KQLKEWQKFQEEAAK 291


>gi|240104137|ref|YP_002960446.1| alaRS-like alanyl-tRNA synthetase related protein [Thermococcus
           gammatolerans EJ3]
 gi|239911691|gb|ACS34582.1| alaRS-like alanyl-tRNA synthetase related protein [Thermococcus
           gammatolerans EJ3]
          Length = 108

 Score = 47.0 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT-KYNDRV 676
           R  V  ++  T  E++ IE   N+ + +N PV    + RE+A       +       + V
Sbjct: 20  RLTVKFNRKPTPEEVEEIERLANEKVQENAPVEVYELPREEAEKHFGEDMYDLFPVPEEV 79

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
           + + V   +G   +   C   H  +TG I 
Sbjct: 80  KTLKVVVIEG--WNVNACNKEHTRTTGGIG 107


>gi|289472548|gb|ADC97459.1| putative threonyl-tRNA synthetase [Amblyomma cajennense]
          Length = 209

 Score = 47.0 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQ 645
           HS+ H+L  AL  + G  +          G  +D+   +   SA +  SIE  + +I+ +
Sbjct: 81  HSSAHVLGEALERLYGGCLCYGPPI--EGGFYYDMHVDQGGVSAVDHPSIEGLMRNIVKE 138

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     + +ED +          +              G      LC G HV  TG++
Sbjct: 139 RQPFERLELPKEDLLRMFQYNPFKVRILQEKVQTPTTTVYGCGPLIDLCRGPHVRHTGKV 198

Query: 706 MLLYIVSESS 715
             L++   SS
Sbjct: 199 KALHVTKNSS 208


>gi|302829308|ref|XP_002946221.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
 gi|300269036|gb|EFJ53216.1| hypothetical protein VOLCADRAFT_102823 [Volvox carteri f.
           nagariensis]
          Length = 691

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKS 634
           D + R      HS+ H+L   L    G  ++   +    +G  +D        +  +   
Sbjct: 117 DAEGRDA--FWHSSAHVLGQVLELEFGVDLTIGPAL--DEGFYYDCYMGNRTLAEGDKSR 172

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSAL 693
           IE      + ++      +++R++A++                   ++     G     L
Sbjct: 173 IEKRYEAAVKESQKFQRVVVSRDEALSMFQENKFKIEIIQGLPADATITVYRVGPMVD-L 231

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G H+ ST  +    + S S 
Sbjct: 232 CSGPHLPSTSYLKAAAVTSMSR 253


>gi|145230123|ref|XP_001389370.1| threonyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS
           513.88]
 gi|134055485|emb|CAK44000.1| unnamed protein product [Aspergillus niger]
          Length = 718

 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 34/205 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      TP G  +D+     + +   +  S++ + N I  
Sbjct: 130 HSSAHCLGEACECEYGCLLSHGPP--TPQGFFYDMAMPDNRVVRETDWPSLDRHANRIFK 187

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        + +E+     A +     Y D+     V  E   V+       LC G H+ 
Sbjct: 188 EKQSFDRLEVTKENLKKMFAYSKYKLHYIDK----LVTGEKSTVYRCGSLVDLCRGPHIQ 243

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           STG++    I+  SS               A       ++ L+ +             + 
Sbjct: 244 STGKVKTFKIMQNSS---------------AYFLGDQSNDSLQRIRGV------AFPDK- 281

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED 785
           +++ E  + L+    +  ++L  E 
Sbjct: 282 KQMQEHLKFLEEAEKRNHVKLGKEQ 306


>gi|121708695|ref|XP_001272218.1| threonyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
 gi|119400366|gb|EAW10792.1| threonyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1]
          Length = 743

 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      TP G  +D+   +   +  ++  +++   + I  
Sbjct: 152 HSSAHCLGEACECEYGCLLSHGPP--TPQGFFYDMAMPENRVVKESDWPALDSRASRIFK 209

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        + +E+     A +     Y D+     V  E   V+       LC G H+ 
Sbjct: 210 EKQSFDRLEVTKENLKKMFAYSKYKLHYIDK----LVTGEKSTVYRCGSLVDLCRGPHIQ 265

Query: 701 STGEIMLLYIVSESS 715
           +TG+I    I+  SS
Sbjct: 266 NTGKIKTFKIMQNSS 280


>gi|47220916|emb|CAG03123.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 822

 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 26/190 (13%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS+ H+L  A+    G  +               +   + ++S EL  +E     ++ 
Sbjct: 206 YWHSSAHVLGEAMERFYGGCLCYGPPVENGFYYDMFLDGQRGVSSTELGDLEALCRTVMK 265

Query: 645 QNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +  P     +++E  +           +L  K +     V   Y  G +    LC G HV
Sbjct: 266 EKQPFERLEVSKEALLEMFQYNQFKCRILKEKVSGATTTV---YRCGPLID--LCRGPHV 320

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
             TG I  L +   SS               A        E L+ +          ++  
Sbjct: 321 RHTGRIKALKLYKSSS---------------AYWEGRSDMETLQRVYGI-SFPDSKMLKE 364

Query: 760 VEEIWEEYRK 769
            E   EE +K
Sbjct: 365 WERFQEEAKK 374


>gi|159109673|ref|XP_001705100.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
 gi|157433179|gb|EDO77426.1| Threonyl-tRNA synthetase [Giardia lamblia ATCC 50803]
          Length = 695

 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 27/209 (12%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDN 638
           R +    HS+ HLL +AL     +H+  +G  I           +S  +    L  ++  
Sbjct: 95  RAREVFWHSSAHLLGYALEKTFQAHLG-HGPAIDSGFFYDAFFENSLKMEPESLLQLDKA 153

Query: 639 VNDIIAQ------NLPV---VTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGV 688
             +I+ Q      + PV       + +++A+     + L     +D V+   +       
Sbjct: 154 AAEIVKQAAAAPGDSPVRRFTRLEVTKQEALDLFSYSKLKSELISDHVQDGEMCSVYQCG 213

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G H+   G I     +  S                A        E ++ + + 
Sbjct: 214 DFVDFCRGPHIPDLGLIQAFKCMYSS---------------AAYFKGDQNRESMQRVYAV 258

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
              S+  +   +E + E  R+     AK 
Sbjct: 259 AFPSKDQLDKHIELLEEAKRRDHRNLAKE 287


>gi|328773873|gb|EGF83910.1| hypothetical protein BATDEDRAFT_18299 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A     G H+         +G  ++++  + +T A+ +S++      +++ 
Sbjct: 136 HSSAHVLGEACELHYGCHLCIGPPI--EEGFYYEMSMERSVTLADYESLQTLAKRAVSEK 193

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHVSS 701
            P    ++++E+ +          KY   +    +                LC G H+ +
Sbjct: 194 QPFERLVVSKENLLEMFQ----DNKYKVHIIKDKIPDNTSTTVYRCGPLIDLCYGPHIPN 249

Query: 702 TGEIMLLYIVSESS 715
           T  I  L +   SS
Sbjct: 250 TNRIKALKVTKNSS 263


>gi|260900771|ref|ZP_05909166.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
 gi|308110613|gb|EFO48153.1| threonine--tRNA ligase [Vibrio parahaemolyticus AQ4037]
          Length = 134

 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++   
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKELAKT 131

Query: 646 NLP 648
              
Sbjct: 132 KYE 134


>gi|289524578|ref|ZP_06441432.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502183|gb|EFD23347.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 63

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 840 IVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
            +  ED + D  +A       AK++GGGGG GRP++AQ+GG    K + A+  V   L +
Sbjct: 1   AMADEDAVRDGIHAGKFIDRIAKIVGGGGG-GRPNVAQAGGKEVEKLEDALNAVPRILTE 59


>gi|269966331|ref|ZP_06180418.1| Threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
 gi|269829070|gb|EEZ83317.1| Threonyl-tRNA synthetase [Vibrio alginolyticus 40B]
          Length = 146

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
            HS  HLL HAL  +        G  I  +G  +D+   + +T  +L+ IE  + ++
Sbjct: 73  RHSCAHLLGHALKQLYPQAKMAIGPTID-NGFYYDIDLDESLTQEDLEKIEKRMKEL 128


>gi|156838419|ref|XP_001642915.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113495|gb|EDO15057.1| hypothetical protein Kpol_411p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 729

 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 29/158 (18%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT-----------HS 624
           D   R      HS+ H+L  A    LG+H++      T DG  ++               
Sbjct: 137 DEGKRV---FWHSSAHVLGEACECNLGAHINYGPP--TEDGFFYEFAARDSLKDPKECEE 191

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
           + ++ A+  ++E    ++I +       +M++ED +     +        +  +V  +  
Sbjct: 192 RTVSQADFPNLEGVAKNVIKEKQKFERLVMSKEDLLEMFKYSKY------KTYLVETKIP 245

Query: 685 DGGVHSSALCG-------GTHVSSTGEIMLLYIVSESS 715
           DG   +   CG       G H+  TG I    ++  S+
Sbjct: 246 DGTSTTVYKCGKLIDLCVGPHIPHTGRIKAFKLLKNSA 283


>gi|261408995|ref|YP_003245236.1| hypothetical protein GYMC10_5219 [Paenibacillus sp. Y412MC10]
 gi|261285458|gb|ACX67429.1| hypothetical protein GYMC10_5219 [Paenibacillus sp. Y412MC10]
          Length = 565

 Score = 46.6 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 33/174 (18%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R  L  + ++LK      K      + ++EE  +E  KL     ++   L+       + 
Sbjct: 199 RKKLQEKLDELKKALEQEK-HPEQALEKLEEAMKELEKLAKQQEEKAKALSELAKQMQQE 257

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             ++ +   ++E  + ELK  M  L ++++        +S+E+K  +      D L +  
Sbjct: 258 KALSQVGKKLAEGMADELKQEMKKLTEQVKK-------MSQEEKNEL-----SDALKK-- 303

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQ----SG-----GPNGNKADQAIAGVASFL 896
              LA  +AK +  G       + Q    +      G    + ++A+  +A  L
Sbjct: 304 ---LAEEAAKQMEDGK------LEQELQNAADALKEGKLPKELEEALQQLAEEL 348


>gi|290989139|ref|XP_002677200.1| threonyl-tRNA synthetase [Naegleria gruberi]
 gi|284090806|gb|EFC44456.1| threonyl-tRNA synthetase [Naegleria gruberi]
          Length = 672

 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 29/246 (11%)

Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587
             D   +I  G+      V  K  G          G    E   +L  D+   +++   H
Sbjct: 57  PHDIAMSISAGLAANC--VVAKVNGALWDMGRALEGDCTLE---LLKFDHPEAKEV-FWH 110

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S++H++  A+  +    + +                   ++  +   ++D V  II +  
Sbjct: 111 SSSHVMGEAMEDVFKCFLCKGPPLEDGGFYYEAYMGDNSVSETDYPKVKDAVTKIINEKQ 170

Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTG 703
           P    ++ + +A+   A      +          E +   V+        C G H+ +TG
Sbjct: 171 PFERLLITKAEALELFADNKFKVEILSEKVK---EGDYCSVYRCGRLIDPCKGPHLLNTG 227

Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++    +   SS      R                 E L+ + +        ++   + +
Sbjct: 228 KVTTFEVTKNSSS---YWR------------ADASKETLQRVYAM-SFPDKKLMKEWQTL 271

Query: 764 WEEYRK 769
            EE +K
Sbjct: 272 MEEAKK 277


>gi|54307963|ref|YP_128983.1| metal-dependent hydrolase [Photobacterium profundum SS9]
 gi|46912389|emb|CAG19181.1| hypothetical metal-dependent hydrolase [Photobacterium profundum
           SS9]
          Length = 291

 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 76/238 (31%), Gaps = 47/238 (19%)

Query: 511 VEVVFDQTPFYAEA---GGQLGDTGCAIGDGIRLQI--------------------TDVQ 547
           V VV D+T F+  +        D G          +                      V+
Sbjct: 33  VYVVTDRTCFHPVSHIWPDHPADKGTIALRDSCFDVAGCFTGAVDLATNTLRVGTDIPVK 92

Query: 548 KKAEGI--FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605
           + A G    V H I E        ++ L++D   ++ LS  HSA HL   AL+ +L S  
Sbjct: 93  RDAPGWTFVVVHYIAEDVQWSKGDTVTLSVDKAYQQALSRGHSAGHLSSLALNKVLHSDY 152

Query: 606 SQN-------------------GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
            +                     S ++ D         K +    L + +   N ++A  
Sbjct: 153 WRKDASRKDELGHYDFHSYAQQQSIVSEDKSTDTYRLGKTLRKRGLNTADMLAN-LVALT 211

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
             +  ++     + A+      GT+  D         E   +     CGG+H+ S  E
Sbjct: 212 ELINQQLETWRQSSAAVVMRREGTQLTDSRYWQCDLGEKEMIEI--PCGGSHIQSLAE 267


>gi|50310653|ref|XP_455348.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644484|emb|CAG98056.1| KLLA0F05918p [Kluyveromyces lactis]
          Length = 744

 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 24/145 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH---------SKPITSAELKSIED 637
           HS+ H+L  A    LG+H+       T DG  ++             + ++ A+  ++E 
Sbjct: 162 HSSAHVLGEACECNLGAHICLGPP--TDDGFFYEFACRDSMDADSPERTVSQADFPNLES 219

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG-- 695
              ++I Q       +M++E+ +     +        +  +VS +  DGG  +   CG  
Sbjct: 220 VSKNVIKQKQRFERLVMSKENLLKMFHYSKY------KTYLVSTKIPDGGATTVYRCGSL 273

Query: 696 -----GTHVSSTGEIMLLYIVSESS 715
                G H+  TG I    ++  SS
Sbjct: 274 IDLCTGPHIPHTGRIKAFKLLKNSS 298


>gi|289472550|gb|ADC97460.1| putative threonyl-tRNA synthetase [Amblyomma hebraeum]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + SL L        +    HS+ H+L  AL  + G  +          G  +D+  
Sbjct: 58  PLEEDCSLELLKFEDKEGEQVFWHSSAHVLGEALERLYGGCLCYGPPI--EGGFYYDMHL 115

Query: 624 SKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +   SA +  SIE  + +I+ +  P     + +ED +              R+    V+
Sbjct: 116 DQGGVSAVDHPSIEGLMRNIVKERQPFERLELPKEDLLRMFQYNPFKV----RILQEKVQ 171

Query: 683 YEDGGVHSS----ALCGGTHVSSTGEIMLLYIVSESS 715
                V+       LC G HV  TG++  L++   SS
Sbjct: 172 TPTTTVYRCGPLIDLCRGPHVRHTGKVKALHVTKNSS 208


>gi|145348874|ref|XP_001418868.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579098|gb|ABO97161.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 674

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 8/150 (5%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
             HS+ H+L  AL    G+ ++  G  I            + +T  + + I+  +  II 
Sbjct: 118 YWHSSAHVLGEALELEYGADLTI-GPAIEEGFYYDCYLGERTLTPEDTEIIKGRMEKIIK 176

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +       +++R +A+          +    +   +            LC G H+  T  
Sbjct: 177 EKQEFQRIVVSRAEALEMFEENKFKIELISNLPEDATISCYRCGPMVDLCRGPHLPDTAW 236

Query: 705 IMLLYI--VSESSIRAGIR-----RIEAIT 727
           +  + +   S +  RA +      R+ A+T
Sbjct: 237 LKSVSVNQCSRAHWRADVTKDPLVRVYAVT 266


>gi|312884309|ref|ZP_07744018.1| predicted metal-dependent hydrolase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368082|gb|EFP95625.1| predicted metal-dependent hydrolase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 76/241 (31%), Gaps = 39/241 (16%)

Query: 509 QKVEVVFDQTPFYAEA---GGQLGDTGCAIG-------------------DGIRLQITDV 546
             + VV   +PF+  +        D G   G                    G  + +   
Sbjct: 30  DYLYVVTRTSPFHPVSHIWPDHPADKGTIDGYPVVDCQVGAVEVSTGQLYVGDSIPVKRN 89

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI--LGSH 604
           Q     + VH    E   +     + L +D   +  LS  HSA HL   AL+ +      
Sbjct: 90  QPGWNFVVVHCLAKESKTIEVNQMVNLAVDKAYQLSLSRGHSAGHLSSLALNKVLTQQGF 149

Query: 605 VSQNGSCITPDGLRFDVTHSK------PITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658
             ++     P G     ++++      P    +   +   +      +  ++ ++ + E 
Sbjct: 150 WRKDAERKDPHGNYDFNSYAQVSSFVSPEKCIDHYRLGKTIRKRGLNSHEMLDKLKSIEV 209

Query: 659 AIASGAAALLGTKYNDRVR---VVSVEYEDG------GVHSSALCGGTHVSSTGEIMLLY 709
            +       +G K    +R      ++             +   CGGTHVSS GE   + 
Sbjct: 210 LVNQQLCVWVGLKSPVEIRCEGDKLIDSRYWHCNLGESTEAVIPCGGTHVSSLGEYCQIT 269

Query: 710 I 710
           +
Sbjct: 270 V 270


>gi|159476198|ref|XP_001696198.1| hypothetical protein CHLREDRAFT_167047 [Chlamydomonas reinhardtii]
 gi|158282423|gb|EDP08175.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 688

 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 5/171 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS 606
           +K        HA      L  + +L L        + +  HS+ HLL  AL    G  ++
Sbjct: 78  KKVVVADVDGHAWDLARPLEGDCALKLFSFDDTEGKDAFWHSSAHLLGQALELEFGVDLT 137

Query: 607 QNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665
              +    +G  +D     + +T A+   +E  +   + ++      ++ RE+A++    
Sbjct: 138 IGPAL--EEGFYYDCFMGDRTLTEADKARLEKRIEGSVKESQKFQRVVVTREEALSMFEE 195

Query: 666 ALLG-TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                          ++     G     LC G H+ ST  +  + +   S 
Sbjct: 196 NKFKIEIIQGLPADATITIYRVGPMVD-LCSGPHLPSTSYMKAISVTQMSR 245


>gi|309364139|emb|CAP25413.2| hypothetical protein CBG_04771 [Caenorhabditis briggsae AF16]
          Length = 1325

 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 80/527 (15%), Positives = 172/527 (32%), Gaps = 61/527 (11%)

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRG----------LVLLDGVLSHLGKDEILNGDVAF 388
           E+ + +      L  E++R  +T+  G          L LL   +  L K+ +   +  +
Sbjct: 116 EIRELQDKCRS-LEQENQRMVETIKTGSDDQKEIEEELNLLRKRVLDLEKENVFKSEEIY 174

Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIIS----FNQALEEQRSRARAHSLG-----LGSG 439
           +  D     +D ++++         ++ S      + L++ RSR +              
Sbjct: 175 QKNDELQKMMDKLRNLSEEYNRTMAEMASGKRMLEEKLDKYRSRLKESDRKSLEDHKEKE 234

Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL--CQKPPIDLTNGVSSIVKAIVQ 497
            T+K+   +K+      F+   + + S+  KE+ ++L    K   +  + + S    + +
Sbjct: 235 NTQKVLSEVKQLRSQIDFL-TPVRKDSRLKKENDEMLEFSAKLIKETMSELKSKNAKLEE 293

Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557
                 E V   K E+   +    A  G     T     + +R     V K    I +  
Sbjct: 294 DLAEKNELVKRTKEELEALKKSMDAAMGDSDTATKFLQEENMR-----VSKSGRIIVLVP 348

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
              E  +L T       +    R QL+   +                +       T D  
Sbjct: 349 KPSEYLVLETIYQPGRHLPRPPRLQLTRQKADIRC----------DLIDARRQLTTFDQK 398

Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
           + ++   +     E K I +    +  +   +      RE  I      + G +   R  
Sbjct: 399 KAELEKQRDDALEEAKRISELKKRVEQELEELTILPTQREQQIEELQTRIAGLEVIKREH 458

Query: 678 VVSVEYEDGGVHSSALCGGTHVS-STGEIMLLYIVSESSIRAGIRRIE----AITGQRAR 732
             SV+ E    +      G H+  +  +      + E++  +  R IE     +   R  
Sbjct: 459 D-SVKNELSKTNEKLNQMGRHLEMADKQCTHFKSLKETAEGSRRRAIEQCNEMVVRIRGL 517

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCHKI 791
              +    K++     L+      V ++E + EE +++   + +    L+  +       
Sbjct: 518 EASLENQRKVEQELETLRAENSRQVQKIEYLKEEIQEVHKDYRQELTTLSRQKSEERRNE 577

Query: 792 ADVNFMS--------------HIISEVDSKELK--SVMDALQKKIQS 822
            DV  +                 I EV +  LK   ++D ++++   
Sbjct: 578 EDVELLKLTLSKRESELRSARKTIEEVKADNLKVQQILDEVRRQQDK 624


>gi|88607554|ref|YP_505644.1| alanyl-tRNA synthetase domain-containing protein [Anaplasma
           phagocytophilum HZ]
 gi|88598617|gb|ABD44087.1| alanyl-tRNA synthetase domain protein [Anaplasma phagocytophilum
           HZ]
          Length = 94

 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878
           + +  +  K+ + ++ V E  + R  A D+ +   ++   G GGG   +A++ 
Sbjct: 18  VAISTTDGKRTTFIVGVGESAIKRIKATDIVKALQQI--QGKGGGNASIARAS 68


>gi|325954887|ref|YP_004238547.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
 gi|323437505|gb|ADX67969.1| threonyl-tRNA synthetase [Weeksella virosa DSM 16922]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDI 642
           +  HS+ HLL  A+     +     G  I   G  +DV   +      + + IE  + + 
Sbjct: 70  AFWHSSAHLLAQAILQFYPNAKLTIGPAI-EKGFYYDVDFGEDSFGEKDFEKIEKAMLEN 128

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
             +        +++ +A+         T+    +    + +      +  LC G H+ +T
Sbjct: 129 AKKKAEFKLYSVSKAEALEEYKNNEYKTELISNLEDGDITFCVHDNFTD-LCRGGHLPNT 187

Query: 703 GEIMLLYIVSESSIRAGIRR 722
           G +    I+   ++     R
Sbjct: 188 GFVKAAKIL---NVAGAYWR 204


>gi|119383376|ref|YP_914432.1| hypothetical protein Pden_0624 [Paracoccus denitrificans PD1222]
 gi|119373143|gb|ABL68736.1| protein of unknown function DUF558 [Paracoccus denitrificans
           PD1222]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640
           + + +N   +H L   +    G  +            R +    +      L+     +N
Sbjct: 16  QGIELNADQSHYLSSVMRQGAGDEILVFNGQDGEWLARIERIAKRGGALEALRQTAPQLN 75

Query: 641 --DIIAQNLPVVTRIMN--REDAIASGAAALLG--TKYNDRVRVVSVEYEDGGVHSSALC 694
             D+     P+     +   E A   GAA +L   T + +  R+     +   V ++  C
Sbjct: 76  PPDLWLVFAPIKKARTDFIVEKAAEMGAARILPVQTDHTNSERIRQDRLQAHAVEAAEQC 135

Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRI----EAITGQR 730
           GGTHV    +++ L  +      AG RRI    EA+ G  
Sbjct: 136 GGTHVPEVCDLVPLSRL-LDGWDAG-RRILWADEALAGPA 173


>gi|300214322|gb|ADJ78738.1| Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
           [Lactobacillus salivarius CECT 5713]
          Length = 649

 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 80/201 (39%), Gaps = 9/201 (4%)

Query: 521 YAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           + +   +  D      +  + + I+  +K   G    + +     L+ + S+ +     N
Sbjct: 8   FPDNSVKEFDASVTTAEIAKSISISLAKKAVAGKVDGNFVDLNQPLKEDGSIEIITKDSN 67

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDN 638
              + +  +A  +L +AL  +  +     G  +T  G  FD  +S+   +  + + I   
Sbjct: 68  DGLVVLWRTAAQVLANALHELYPNMKFGLG-DVTEHGFYFDTDNSEGQVAETDFEKISQK 126

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTK----YNDRVRVVSVEYEDGGVHSSALC 694
           +++II  NLP+     + E+A+   +      +      ++     V Y+ G        
Sbjct: 127 MSEIIKANLPIERVEFSEEEALNLVSGDEYQEELVRDVANKNNGRVVAYKQGDFIDIT-- 184

Query: 695 GGTHVSSTGEIMLLYIVSESS 715
            G  +SSTGE+ +  ++S + 
Sbjct: 185 DGVVLSSTGEVKIFKLLSVAG 205


>gi|289472546|gb|ADC97458.1| putative threonyl-tRNA synthetase [Amblyomma americanum]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQ 645
           HS+ H+L  AL  + G  +          G  +D+   +   SA +  SIE  + +I+ +
Sbjct: 81  HSSAHVLGEALERLYGGCLCYGPPI--EGGFYYDMHVDQGGVSAVDHPSIEGLMRNIVKE 138

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
             P     + +ED +              R+    V+     V+       LC G HV  
Sbjct: 139 RQPFERLELPKEDLLRMFQYNPFKV----RILQEKVQTPTTTVYRCGPLIDLCRGPHVRH 194

Query: 702 TGEIMLLYIVSESS 715
           TG++  L++   SS
Sbjct: 195 TGKVKALHVTKNSS 208


>gi|194210848|ref|XP_001916146.1| PREDICTED: similar to threonyl-tRNA synthetase 2, mitochondrial
           [Equus caballus]
          Length = 667

 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A   +LG+ + +  S        F +   + +  ++L  +E     + A  
Sbjct: 132 HSSTHVLGSAAEQLLGAVLCRGPSTECGFYHDFFLGKERTVRGSDLPLLEQFCRKLAAAA 191

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +++             +  +           G      LC G H+  TG+I 
Sbjct: 192 QPFRRLEASQDQLRQLFKDNPFKLRLIEEKVTGPKATVYGCGMLVDLCQGPHLRHTGQIG 251

Query: 707 LLYIVSES 714
            L +++E 
Sbjct: 252 ALKLLTEQ 259


>gi|260802092|ref|XP_002595927.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
 gi|229281179|gb|EEN51939.1| hypothetical protein BRAFLDRAFT_268618 [Branchiostoma floridae]
          Length = 681

 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 5/154 (3%)

Query: 564 ILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
               + S+  L  D +  + +   HS+ H++  A+    G  +         DG  +D+ 
Sbjct: 87  PFEGDASVEFLKFDDEEAKAV-YWHSSAHIIGEAMERHYGGCLCYGPPI--EDGFYYDMY 143

Query: 623 HSKPITSA-ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                 S+ +  ++E     I+ +  P V   M +ED +   A      +  ++      
Sbjct: 144 LEGRQVSSNDFPALETVTKSILKEKQPFVRLEMKKEDLLKMFAYNKFKVRILEQKVTTPT 203

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                      LC G HV  TG+I  L++   SS
Sbjct: 204 TTVYRCGPLIDLCRGPHVRHTGKIKALHVHKNSS 237


>gi|321475248|gb|EFX86211.1| hypothetical protein DAPPUDRAFT_127463 [Daphnia pulex]
          Length = 688

 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 3/130 (2%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQ 645
           HS  H+L  ++    G  +         +G  +D     + +++ +   +E+ +   I +
Sbjct: 121 HSTAHILGESMERCYGGCLCYGPPI--ENGFYYDMFIQDQQVSNFDFPVLENVMKAAIKE 178

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
             P     M +ED +          +  +                  LC G HV  TG+I
Sbjct: 179 KQPFERLEMKKEDLLEMFKYNEFKVRILNEKVDTPTTTAYRCGPLIDLCLGPHVRHTGKI 238

Query: 706 MLLYIVSESS 715
               I   SS
Sbjct: 239 KAFQITKNSS 248


>gi|114600746|ref|XP_001153909.1| PREDICTED: hypothetical protein isoform 8 [Pan troglodytes]
          Length = 641

 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 13/162 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + SL L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCSLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719
            V   Y  G +    LC G HV  TG+I  L I      + G
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKSEYRKRG 286


>gi|118095671|ref|XP_413774.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 903

 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G  +         +G  +D     + ++S E  ++E+   +II
Sbjct: 333 YWHSSAHILGEAMEGYYGGCLCYGPPI--ENGFYYDMYIEDRGVSSTEFPALENRCKNII 390

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  P     + +E  +               K N     V   Y  G +    LC G H
Sbjct: 391 KEKQPFERLEVKKEILLDMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPH 445

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I   SS
Sbjct: 446 VRHTGKIKALKIFKNSS 462


>gi|289472544|gb|ADC97457.1| putative threonyl-tRNA synthetase [Amblyomma americanum]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVNDIIAQ 645
           HS+ H+L  AL  + G  +          G  +D+   +   SA +  SIE  + +I+ +
Sbjct: 81  HSSAHVLGEALERLYGGCLCYGPPI--EGGFYYDMHVDQGGVSAVDHPSIEGLMRNIVKE 138

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
             P     + +ED +              R+    V+     V+       LC G HV  
Sbjct: 139 RQPFERLELPKEDLLRMFQYNPFKV----RILQEKVQTPTTTVYRCGPLIDLCRGPHVRH 194

Query: 702 TGEIMLLYIVSESS 715
           TG++  L++   SS
Sbjct: 195 TGKVKALHVTKNSS 208


>gi|114600756|ref|XP_001153674.1| PREDICTED: threonyl-tRNA synthetase isoform 5 [Pan troglodytes]
          Length = 641

 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + SL L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCSLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 282


>gi|169617674|ref|XP_001802251.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
 gi|111059311|gb|EAT80431.1| hypothetical protein SNOG_12019 [Phaeosphaeria nodorum SN15]
          Length = 779

 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVNDIIA 644
           HS+ H+L  A     G  +         DG  +++   +     +   K +E  VN+I+ 
Sbjct: 162 HSSAHILGEASERRFGCDLCIGPPV--EDGFYYEMALPEKAAVEQADYKPLETIVNNIVK 219

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +       ++++ED +    +         D++   +            LC G HV  TG
Sbjct: 220 EKQVFQRLVLSKEDLLEMFKSNPYKQHIIKDKIADGTSTTVYRNGPLIDLCRGPHVPHTG 279

Query: 704 EIMLLYIVSESS 715
            I    ++  S+
Sbjct: 280 RIKQFKVMKNSA 291


>gi|320590881|gb|EFX03324.1| hypothetical protein CMQ_3253 [Grosmannia clavigera kw1407]
          Length = 863

 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 103/302 (34%), Gaps = 24/302 (7%)

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588
            +        +   +    +    +      +E  +LR   S++ +++   R    +  S
Sbjct: 36  HEAPVLSAVSVSSAVLLTNQPPGPLRCCCGQMECLLLRHNCSVLESVENDVRIAAKLGQS 95

Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648
                H A   +  +   +       D L  D    K + +   + IE+  N  +   L 
Sbjct: 96  LLER-HEAY--LADAERDRAELLKRIDQLEMD---KKELEAENARKIEE--NRALLDQLE 147

Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
            +   +   D       A L    + +  +  +E   G           H+++      L
Sbjct: 148 ALNSNVTDSDTRLKLLEATLQ---SSQQIIRRLEGAAGRADDMER----HLAALEAEQAL 200

Query: 709 Y----IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
                + SES  R+ I+R      +R  + L  Q E+++      K     V+GRVE   
Sbjct: 201 LQSTLVASESEARSAIQR--WKRAERGIADLQDQLERMERETKQEKERHMEVMGRVERQR 258

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSC-HKIADVNFMSHIISEV--DSKELKSVMDALQKKIQ 821
              ++L     + K     + L   +K      +SH + ++  D+  ++  M  L++ + 
Sbjct: 259 AVEKELSTAAGRLKGAAAAKSLQDNNKAGGSGVVSHFVRDLLQDNASMQLGMAELREMLI 318

Query: 822 SG 823
           + 
Sbjct: 319 NS 320


>gi|189200603|ref|XP_001936638.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983737|gb|EDU49225.1| threonyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 768

 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A     G  +               +  +  +  A+ K +E  V+ I+ + 
Sbjct: 156 HSSAHILGEASERRFGCDLCIGPPIEDGFYYEMALPDNAAVDPADHKPLETIVSSIVKEK 215

Query: 647 LPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            P     ++++D +    +         D++   +            LC G HV  TG I
Sbjct: 216 QPFERLTLSKDDLLEMFKSNKYKQHIIKDKIADGTFTTVYRNGPLIDLCRGPHVPHTGRI 275

Query: 706 MLLYIVSESS 715
               ++  S+
Sbjct: 276 KQFKVMKNSA 285


>gi|70993228|ref|XP_751461.1| threonyl-tRNA synthetase [Aspergillus fumigatus Af293]
 gi|66849095|gb|EAL89423.1| threonyl-tRNA synthetase, putative [Aspergillus fumigatus Af293]
 gi|159125604|gb|EDP50721.1| threonyl-tRNA synthetase, putative [Aspergillus fumigatus A1163]
          Length = 737

 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      TP G  +D+     + +  ++  +++   + I  
Sbjct: 146 HSSAHCLGEACECEYGCLLSHGPP--TPQGFFYDMAMPDNRVVRESDWPALDSRASRIFK 203

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        + +E+     A +     Y D+     V  E   V+       LC G H+ 
Sbjct: 204 EKQSFDRLEVTKENLKKMFAYSKYKLHYIDK----LVTGEKSTVYRCGTLVDLCRGPHIQ 259

Query: 701 STGEIMLLYIVSESS 715
           +TG+I    I+  SS
Sbjct: 260 NTGKIKTFKIMQNSS 274


>gi|119499848|ref|XP_001266681.1| threonyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
 gi|119414846|gb|EAW24784.1| threonyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181]
          Length = 737

 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      TP G  +D+     + +  ++  +++   + I  
Sbjct: 146 HSSAHCLGEACECEYGCLLSHGPP--TPQGFFYDMAMPDNRVVRESDWPALDSRASRIFK 203

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        + +E+     A +     Y D+     V  E   V+       LC G H+ 
Sbjct: 204 EKQSFDRLEVTKENLKKMFAYSKYKLHYIDK----LVTGEKSTVYRCGTLVDLCRGPHIQ 259

Query: 701 STGEIMLLYIVSESS 715
           +TG+I    I+  SS
Sbjct: 260 NTGKIKTFKIMQNSS 274


>gi|170575688|ref|XP_001893343.1| threonyl-tRNA synthetase, cytoplasmic [Brugia malayi]
 gi|158600735|gb|EDP37841.1| threonyl-tRNA synthetase, cytoplasmic, putative [Brugia malayi]
          Length = 685

 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 1/121 (0%)

Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            A+    G H+   G  I+             IT  +   +E  V  ++    P    ++
Sbjct: 122 QAMERYCGGHLCY-GPPISEGFYYDMWKEGSTITPDDFPKLEQIVKCVVKDKQPFERLVV 180

Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           ++ED +          +  +                  LC G HV  TG++  L +V  S
Sbjct: 181 SKEDLLEMFKYNKFKVRIINEKITTPFTTVYRCGPLIDLCRGPHVRHTGKVKALTVVKTS 240

Query: 715 S 715
           S
Sbjct: 241 S 241


>gi|194374367|dbj|BAG57079.1| unnamed protein product [Homo sapiens]
          Length = 756

 Score = 45.4 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 165 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 222

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 223 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 282

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 283 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 315


>gi|114600744|ref|XP_001153847.1| PREDICTED: threonyl-tRNA synthetase isoform 7 [Pan troglodytes]
          Length = 715

 Score = 45.4 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + SL L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCSLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 282


>gi|70931454|ref|XP_737408.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56512774|emb|CAH84853.1| hypothetical protein PC301267.00.0 [Plasmodium chabaudi chabaudi]
          Length = 68

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 2  SNVSSIRTTFLEFFQKNGHELLPSSSLIPCN 32
               +R  F+ +F+   H ++ S+S+IP N
Sbjct: 38 MTSEQVRNNFINYFKNKNHTVVDSASVIPYN 68


>gi|114600754|ref|XP_001153291.1| PREDICTED: threonyl-tRNA synthetase isoform 1 [Pan troglodytes]
          Length = 619

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + SL L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 28  PLEEDCSLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 85

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 86  EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 145

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 146 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 178


>gi|114600748|ref|XP_001153418.1| PREDICTED: threonyl-tRNA synthetase isoform 2 [Pan troglodytes]
 gi|114600750|ref|XP_001153486.1| PREDICTED: threonyl-tRNA synthetase isoform 3 [Pan troglodytes]
 gi|114600752|ref|XP_001153550.1| PREDICTED: threonyl-tRNA synthetase isoform 4 [Pan troglodytes]
          Length = 664

 Score = 45.4 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + SL L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 73  PLEEDCSLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 130

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 131 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 190

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 191 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 223


>gi|56789234|gb|AAH88355.1| TARS protein [Homo sapiens]
          Length = 682

 Score = 45.1 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 282


>gi|302682704|ref|XP_003031033.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
 gi|300104725|gb|EFI96130.1| hypothetical protein SCHCODRAFT_77271 [Schizophyllum commune H4-8]
          Length = 728

 Score = 45.1 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A     G H+   G               +P+  ++  ++E      I + 
Sbjct: 155 HSSAHVLGEAAERHYGCHLCL-GPPTDEGFFYEMAIEDRPVQPSDYPALEKVSEKAIKEK 213

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVR-VVSVEYEDGGVHSS----ALCGGTHVSS 701
                 ++++E+ +          KY   +      + E   V+       LC G H+  
Sbjct: 214 QKFERLVVSKENLLKMFNYN----KYKQYLIQTKIPDGESTTVYRCGPMIDLCVGPHIPH 269

Query: 702 TGEIMLLYIVSESS 715
           TG I  + +   S+
Sbjct: 270 TGRIKAMMVTKSSA 283


>gi|114600738|ref|XP_517835.2| PREDICTED: threonyl-tRNA synthetase isoform 10 [Pan troglodytes]
 gi|114600740|ref|XP_001153787.1| PREDICTED: threonyl-tRNA synthetase isoform 6 [Pan troglodytes]
 gi|114600742|ref|XP_001153971.1| PREDICTED: threonyl-tRNA synthetase isoform 9 [Pan troglodytes]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + SL L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCSLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 282


>gi|71895375|ref|NP_001026618.1| threonyl-tRNA synthetase, cytoplasmic [Gallus gallus]
 gi|53128235|emb|CAG31282.1| hypothetical protein RCJMB04_4k14 [Gallus gallus]
          Length = 711

 Score = 45.1 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VT 622
            L  + +L L        Q    HS+ H++  A+  I G  +         +G  +D   
Sbjct: 120 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERIYGGCLCYGPPI--ENGFYYDMFL 177

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
               ++S +  ++E     I+ +  P     + +E  +               K N    
Sbjct: 178 EDGGVSSNDFSALETLCKKIMKEKQPFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 237

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 238 TV---YRCGPLID--LCRGPHVRHTGKIKSIKIHKNSS 270


>gi|311273541|ref|XP_003133917.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDII 643
             HS+ H++  A+  + G  +         +G  +D+   +  ++S +  S+E     II
Sbjct: 112 YWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLEEGGVSSNDFSSLEALCKKII 169

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        + +E  +               K N     V   Y  G +    LC G H
Sbjct: 170 KEKQAFERLEIKKETLLEMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPH 224

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I   SS
Sbjct: 225 VRHTGKIKTLKIHKNSS 241


>gi|296194829|ref|XP_002745122.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic [Callithrix
           jacchus]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDII 643
             HS+ H++  A+  + G  +         +G  +D+   +  ++S +  S+E     II
Sbjct: 153 YWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLEEGGVSSNDFSSLEALCKKII 210

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        + +E  +A              K N     V   Y  G +    LC G H
Sbjct: 211 KEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPH 265

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I   SS
Sbjct: 266 VRHTGKIKALKIHKNSS 282


>gi|193788250|dbj|BAG53144.1| unnamed protein product [Homo sapiens]
          Length = 619

 Score = 45.1 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 28  PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 85

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 86  EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 145

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 146 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 178


>gi|119631208|gb|EAX10803.1| threonyl-tRNA synthetase, isoform CRA_a [Homo sapiens]
          Length = 619

 Score = 45.1 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 28  PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 85

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 86  EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 145

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 146 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 178


>gi|253744023|gb|EET00284.1| Threonyl-tRNA synthetase [Giardia intestinalis ATCC 50581]
          Length = 695

 Score = 45.1 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 27/209 (12%)

Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR-FDVTHSKPITSAELKSIEDN 638
           R +    HS+ HLL +AL     +H+  +G  I           +S  +    L  ++  
Sbjct: 95  RAKEVFWHSSAHLLGYALEKAFQAHLG-HGPAIDSGFFYDAFFENSLKMEPENLVQLDKT 153

Query: 639 VNDIIAQ------NLPV---VTRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYEDGGV 688
             +I+ Q      + P+       + +++A+     + L     +D V+   +       
Sbjct: 154 AAEIVKQASAAPGDSPIRRFTRLEVTKQEALDLFSYSKLKSELISDHVKDGEMCSVYQCG 213

Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748
                C G H+     I     +  S                A        E ++ + + 
Sbjct: 214 DFVDFCRGPHIPDLSLIQAFKCMYSS---------------AAYFKGDQNRESMQRVYAV 258

Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
              S+  +   +E + E  R+     AK 
Sbjct: 259 AFPSKDQLDKHIELLEEAKRRDHRNLAKE 287


>gi|58263294|ref|XP_569057.1| threonine-tRNA ligase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108684|ref|XP_776995.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259678|gb|EAL22348.1| hypothetical protein CNBB5220 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223707|gb|AAW41750.1| threonine-tRNA ligase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 772

 Score = 45.1 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHS--KPITSAEL 632
           D     +    HS+ H+L  A      G      G  +   G  +D++ +  + I+  + 
Sbjct: 182 DNNYEARQVFWHSSAHVLGEACERRYEGC-CLGYGPPLEEGGFFYDMSLANGRTISQDDY 240

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS- 691
           K IED     + +  P     + +E  +           Y   ++    +     V+   
Sbjct: 241 KPIEDVCKAAVKEKQPFERLELPKEVLLEMFKYNKYKQHY---IQDKVPDGTSSTVYRCG 297

Query: 692 ---ALCGGTHVSSTGEIMLLYIVSESS 715
               LC G HV  TG I  L +   SS
Sbjct: 298 PLIDLCLGPHVPHTGRIKSLAVTKNSS 324


>gi|212534744|ref|XP_002147528.1| threonyl-tRNA synthetase, putative [Penicillium marneffei ATCC
           18224]
 gi|210069927|gb|EEA24017.1| threonyl-tRNA synthetase, putative [Penicillium marneffei ATCC
           18224]
          Length = 724

 Score = 45.1 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      TP G  +D+     + +  ++   ++     I  
Sbjct: 133 HSSAHCLGEACELEFGCLLSHGPP--TPQGFFYDMAIPNGRAVLPSDWAPLDKKAAQIFK 190

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        + +E+     A +    KY        VE E   V+       LC G H+ 
Sbjct: 191 ERQSFDRLEVTKENLKKMFAYS----KYKLHYINNLVEGEKSTVYRCGTLVDLCRGPHIQ 246

Query: 701 STGEIMLLYIVSESS 715
           +T +I    I+  SS
Sbjct: 247 NTNKIKTFKIMQNSS 261


>gi|46143184|ref|ZP_00135708.2| COG0441: Threonyl-tRNA synthetase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 95

 Score = 45.1 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644
           I HS  HLL HA+  +  +     G  I  +G  +DV   + +T  +L +IE  + ++  
Sbjct: 33  IRHSCAHLLGHAIKQLFPNVKMAIGPTID-NGFYYDVDLDRSLTQEDLDAIEKRMLELAR 91

Query: 645 QNL 647
            N 
Sbjct: 92  ANT 94


>gi|299745880|ref|XP_001841372.2| tars protein [Coprinopsis cinerea okayama7#130]
 gi|298406796|gb|EAU80442.2| tars protein [Coprinopsis cinerea okayama7#130]
          Length = 720

 Score = 45.1 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS-AELKSIEDNVNDIIAQ 645
           HS+ H+L  A     G H+       T DG  +++  +  + + A+  ++E      + +
Sbjct: 148 HSSAHVLGEAAERHYGCHLCLGPP--TDDGFFYEMAINDRVVTNADYPALEKISESAVKE 205

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSS 701
                  ++++E  +          KY    +V   +     V+       LC G H+  
Sbjct: 206 KQKFERLVVSKEKLLEMFHYNKYK-KYLIETKV--PDGTSTTVYRCGPMIDLCVGPHIPH 262

Query: 702 TGEIMLLYIVSESS 715
           TG+I    +   SS
Sbjct: 263 TGKIKAFMVTKNSS 276


>gi|332022332|gb|EGI62644.1| Ankyrin-2 [Acromyrmex echinatior]
          Length = 7686

 Score = 45.1 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 750  KVSQGNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            K +  +V   V+E  +E +K   ++  H K K   +++DL   K   V+ +  I+ +  +
Sbjct: 3752 KHAAEDVTDDVKEFLDETKKEAEMEEEHVKEKAAASLKDLKDKKDTAVSEVQEIVDKA-A 3810

Query: 807  KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
              +K   D   + ++      V   K++K  V+  V++D     +A   A  
Sbjct: 3811 DRVKEAKDKTAETMKEAKDKTVSALKDQKDKVVEEVSKDAQKVADATKAAGE 3862



 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 750  KVSQGNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            K +  +V   V+E  +E +K   ++  H K K   +++DL   K   V+ +   +     
Sbjct: 2997 KHAAEDVTDDVKEFLDETKKEAEMEEEHLKEKAAASLKDLKDKKDTAVSEVQESVD---- 3052

Query: 807  KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
                   D +++     +  L    K++K  V+  V++D     +A  +A  
Sbjct: 3053 ----KAADRVKEAKDKTVSAL----KDQKDKVVEEVSKDAQKVADATKVAGE 3096



 Score = 37.7 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 15/112 (13%)

Query: 750  KVSQGNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
            K +  +V   V+E  +E +K   ++  H K K   +++DL   K   V+ +         
Sbjct: 3566 KHAAEDVTDDVKEFLDETKKEAEMEEEHIKEKAAASLKDLKDKKDTAVSEVQ-------- 3617

Query: 807  KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858
            + +    D +++     +  L    K++K  V+  V++D     +A   A  
Sbjct: 3618 ETMDKAADRVKETKDKTVSAL----KDQKDKVVEEVSKDAQKVADATKAAGE 3665


>gi|123981026|gb|ABM82342.1| threonyl-tRNA synthetase [synthetic construct]
 gi|123995829|gb|ABM85516.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 711

 Score = 45.1 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 120 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 177

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 178 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 237

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 238 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 270


>gi|189055088|dbj|BAG38072.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score = 45.1 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 120 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 177

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 178 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 237

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 238 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 270


>gi|38202255|ref|NP_689508.3| threonyl-tRNA synthetase, cytoplasmic [Homo sapiens]
 gi|60267755|sp|P26639|SYTC_HUMAN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|33875537|gb|AAH00517.2| Threonyl-tRNA synthetase [Homo sapiens]
 gi|119631209|gb|EAX10804.1| threonyl-tRNA synthetase, isoform CRA_b [Homo sapiens]
 gi|158258124|dbj|BAF85035.1| unnamed protein product [Homo sapiens]
 gi|168277378|dbj|BAG10667.1| threonyl-tRNA synthetase [synthetic construct]
 gi|190690713|gb|ACE87131.1| threonyl-tRNA synthetase protein [synthetic construct]
          Length = 723

 Score = 45.1 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 282


>gi|52632425|gb|AAH10578.2| Threonyl-tRNA synthetase [Homo sapiens]
          Length = 723

 Score = 44.7 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 282


>gi|62897167|dbj|BAD96524.1| threonyl-tRNA synthetase variant [Homo sapiens]
          Length = 723

 Score = 44.7 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 190 EEGGVSSNDFPSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 282


>gi|329928933|ref|ZP_08282743.1| putative phage tail tape measure protein, lambda family
           [Paenibacillus sp. HGF5]
 gi|328937185|gb|EGG33612.1| putative phage tail tape measure protein, lambda family
           [Paenibacillus sp. HGF5]
          Length = 563

 Score = 44.7 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 35/167 (20%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           R  L  + ++LK      K      + ++EE  +E  KL     ++   L+       + 
Sbjct: 199 RKKLQEKLDELKKALEQEK-HPEQALEKLEEAMKELEKLAKQQEEKAKALSELAKQMQQE 257

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                    +S+V  K  + + D L+++++     +  +S+E+K  +      D L +  
Sbjct: 258 KA-------LSQVGKKLAEGMADELKQEMKKLTEQVKKMSQEEKNEL-----SDALKK-- 303

Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
              LA  +AK +  G                 K +Q +   A  LK+
Sbjct: 304 ---LAEEAAKQMEDG-----------------KLEQELKKAADALKE 330



 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L   +E +K L    K  +     + + + E  +++Q   A  ++   + +    ++ 
Sbjct: 221 QALEKLEEAMKELEKLAKQQE----EKAKALSELAKQMQQEKALSQVGKKLAEGMADELK 276

Query: 793 -DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
            ++  ++  + ++  +E   + DAL+K  +          ++ K    +   +   D   
Sbjct: 277 QEMKKLTEQVKKMSQEEKNELSDALKKLAEEA----AKQMEDGKLEQEL---KKAADALK 329

Query: 852 AVDLARLSAKVL 863
              L +   + L
Sbjct: 330 EGKLPKELEEAL 341


>gi|12845562|dbj|BAB26799.1| unnamed protein product [Mus musculus]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 29/212 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T+ +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 131 PLETDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGSPI--ENGFYYDMYL 188

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 189 EEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 248

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            V   Y  G +    LC G HV  TG+   L I   SS                      
Sbjct: 249 TV---YRCGPLID--LCRGPHVRHTGKTKTLKIHKNSST---------------YWEGKA 288

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             E L+ +          ++   E+  EE + 
Sbjct: 289 DMETLQRIYGI-SFPDPKLLKEWEKFQEEAKN 319


>gi|170095495|ref|XP_001878968.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646272|gb|EDR10518.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 721

 Score = 44.7 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 10/134 (7%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A     G H+   G               +P+T+A+  ++E      I + 
Sbjct: 150 HSSAHVLGEAAERHYGCHLCL-GPPTDEGFFYEMAIEERPVTNADYPALEKVSEAAIKEK 208

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHVSS 701
                 ++++E  +          KY   +    V                LC G H+  
Sbjct: 209 QKFERLVVSKEKLLEMFNYN----KYKQYLIQTKVPDGTSTTVYRCGPMVDLCVGPHIPH 264

Query: 702 TGEIMLLYIVSESS 715
           TG+I    +   S+
Sbjct: 265 TGKIKAFMVTKNSA 278


>gi|326926536|ref|XP_003209455.1| PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like,
           partial [Meleagris gallopavo]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G  +         +G  +D     + ++S E  ++E+   +II
Sbjct: 132 YWHSSAHILGEAMEGFYGGCLCYGPPI--ENGFYYDMYIEDRGVSSTEFPALENRCKNII 189

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +  P     + +E  +               K N     V   Y  G +    LC G H
Sbjct: 190 KEKQPFERLEVKKEILLDMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPH 244

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I   SS
Sbjct: 245 VRHTGKIKALKIFKNSS 261


>gi|281341862|gb|EFB17446.1| hypothetical protein PANDA_008118 [Ailuropoda melanoleuca]
          Length = 678

 Score = 44.7 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 87  PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 144

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 145 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 204

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 205 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSS 237


>gi|312218414|emb|CBX98360.1| similar to threonyl-tRNA synthetase [Leptosphaeria maculans]
          Length = 784

 Score = 44.7 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 13/136 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A     G  +               +     +  ++ K +E  VN I+ + 
Sbjct: 158 HSSAHILGEASERRYGCDLCIGPPIEDGFYYEMALPDGAAVEQSDHKPLETIVNSIVKEK 217

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-------ALCGGTHV 699
                  +++ D +    +         +  ++  +  DG   +         LC G HV
Sbjct: 218 QVFQRLTLSKHDLLEMFKSNKY------KQHIIKDKIPDGTFTTVYRNGPLIDLCRGPHV 271

Query: 700 SSTGEIMLLYIVSESS 715
             TG I    I+  S+
Sbjct: 272 PHTGRIKQFKIMKNSA 287


>gi|149180097|ref|ZP_01858602.1| hypothetical protein BSG1_03740 [Bacillus sp. SG-1]
 gi|148852289|gb|EDL66434.1| hypothetical protein BSG1_03740 [Bacillus sp. SG-1]
          Length = 538

 Score = 44.7 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 713 ESSIRAGIR-RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
           E  I    R ++E +  ++ ++     +++L  L   L  S+      ++++ E+ RK  
Sbjct: 170 EEKIMKETREKVEKLAKKKEKNRGEELEKELAQLQKELNESKT-AEQSLKKLLEKERKAA 228

Query: 772 LIHAKRKLQLNVEDLSCHKIAD--VNFMSHIISEVDSKELKSVMDALQKK 819
            +  + ++     +    + A   +N +S  + E+D K+L+  M+ L+ K
Sbjct: 229 ELKKEAEMAEKTLNALSEEAAGSSLNELSKALKEMDQKKLQEAMEKLKNK 278


>gi|330932301|ref|XP_003303723.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
 gi|311320083|gb|EFQ88182.1| hypothetical protein PTT_16056 [Pyrenophora teres f. teres 0-1]
          Length = 776

 Score = 44.7 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A     G  +               +  +  +  A+ K +E  V+ I+ + 
Sbjct: 164 HSSAHILGEASERRFGCDLCIGPPIEDGFYYEMALPDNAAVDPADHKPLETIVSSIVKEK 223

Query: 647 LPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
            P     ++++D +    +         D++   +            LC G HV  TG I
Sbjct: 224 QPFERLTLSKDDLLEMFKSNKYKQHIIKDKIADGTSTTVYRNGPLIDLCRGPHVPHTGRI 283

Query: 706 MLLYIVSESS 715
               ++  S+
Sbjct: 284 KQFKVMKNSA 293


>gi|261252183|ref|ZP_05944756.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891]
 gi|260935574|gb|EEX91563.1| predicted metal-dependent hydrolase [Vibrio orientalis CIP 102891]
          Length = 288

 Score = 44.7 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 88/264 (33%), Gaps = 64/264 (24%)

Query: 499 GEIVEEAVSG-QKVEVVFDQTPFYAEA---GGQLGDTGCAIGD----------------- 537
             +V+    G + + VV D TPF+  +        D G                      
Sbjct: 18  DAVVQLIQQGSEHLYVVTDTTPFHPVSHIWPDHPADRGTLDCHNVLDCQVGAVELASGEL 77

Query: 538 --GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595
             G  + +   +     + VH        L     + L++D   ++ LS  HSA HL + 
Sbjct: 78  YVGQTIPVKRDEPGWSFVVVHCLTKGSVELELGQKVCLSVDKPYQQSLSRGHSAGHLSYL 137

Query: 596 ALSTILGSH--------------------VSQNGSCITPDGLRFDVTHSKPITS------ 629
           AL+ +L  H                     +Q  S +TPD         K +        
Sbjct: 138 ALNKVLTEHGYWRKDADRKDPHGNYDFNSYAQVTSFVTPDKCLDTYRLGKTLRKRGLNSA 197

Query: 630 ---AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
              A L  IE  VN  +     +     + +  +     AL  ++Y       S + ++G
Sbjct: 198 DLLANLAQIESLVNAQL-----IEWLKFDSDILVECHGDALTDSRY------WSCDLKEG 246

Query: 687 GVHSSALCGGTHVSSTGEIMLLYI 710
            + +   CGG+H SS  +  ++ +
Sbjct: 247 AI-AVIPCGGSHASSLNDYAVIEV 269


>gi|255551735|ref|XP_002516913.1| hypothetical protein RCOM_0680890 [Ricinus communis]
 gi|223544001|gb|EEF45527.1| hypothetical protein RCOM_0680890 [Ricinus communis]
          Length = 107

 Score = 44.7 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSVEYEDGGV 688
           + K IE   N +I++   V T ++  E+A       L    +K      V          
Sbjct: 25  QAKEIEAEANALISRGGEVSTAVLPYEEASYICCGCLTDYISKRPSYCEVREP------- 77

Query: 689 HSSALCGGTHVSSTGEIMLLYI 710
             S LCGGTHVS   EI+ + +
Sbjct: 78  --SRLCGGTHVSDILEIISMKV 97


>gi|156042356|ref|XP_001587735.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980]
 gi|154695362|gb|EDN95100.1| hypothetical protein SS1G_10975 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 791

 Score = 44.7 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 12/145 (8%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   R      HS+ H+L  A     G  +               + +   +T A+ + +
Sbjct: 150 DEGRRV---FWHSSAHILGEASERRFGCSLCIGPPIDNGFYYEMGLPNQGTVTDADWQPL 206

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  V  I+ +       +++++D +          KY   +    +              
Sbjct: 207 EKLVGQIVKEKQKFERLVLSKDDLLEMF----KDNKYKQHIIKDKIADGTNTTVYRNGPL 262

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESS 715
             LC G HV +TG I    I+  S+
Sbjct: 263 IDLCRGPHVPNTGRIETFAIMKNSA 287


>gi|33286920|gb|AAH55371.1| Threonyl-tRNA synthetase [Mus musculus]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T+ +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 131 PLETDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 188

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 189 EEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 248

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            V   Y  G +    LC G HV  TG+I  L I   SS                      
Sbjct: 249 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSST---------------YWEGKA 288

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             E L+ +          ++   E+  EE + 
Sbjct: 289 DMETLQRIYGI-SFPDPKLLKEWEKFQEEAKN 319


>gi|164657235|ref|XP_001729744.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
 gi|159103637|gb|EDP42530.1| hypothetical protein MGL_3288 [Malassezia globosa CBS 7966]
          Length = 635

 Score = 44.7 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 21/141 (14%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV----THSKPITSAELKSIEDNVNDI 642
           HS+ H+L  A     G H+       T +G  +++    +  +P+ S + + +E  +   
Sbjct: 53  HSSAHVLGEAAERHYGCHLCIGPP--TDEGFYYEMGMGDSGDRPVKSEDFEPLEKLIGMA 110

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCG------ 695
           +    P    ++ +E  +          KYN  +V +++ +  DG   +   CG      
Sbjct: 111 VKDKQPFERAVLTKEQLLEMF-------KYNKYKVHIINSKIPDGTSTTVYRCGPMIDLC 163

Query: 696 -GTHVSSTGEIMLLYIVSESS 715
            G H+  TG I  + ++  S+
Sbjct: 164 VGPHIPHTGRIKAMTVLKNSA 184


>gi|149027310|gb|EDL82977.1| threonyl-tRNA synthetase, isoform CRA_a [Rattus norvegicus]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 102/362 (28%), Gaps = 62/362 (17%)

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D      A EE+R          G G   +   +   +Y  T+   Y  L+         
Sbjct: 14  DGEKPVDASEEKRKEGGKKRNKDGGGDGGRAELNPWPEYINTRLDMYHKLKAEHDSILAE 73

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K      P          +K  +  G+ V+          +              G +  
Sbjct: 74  KAAKDSKP----------IKVTLPDGKQVDAESWKTTPYQIA------------CGISQG 111

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
              + +  ++  V                  L T+ +L L        Q    HS+ H++
Sbjct: 112 LADNTVVAKVNKV-----------VWDLDRPLETDCTLELLKFEDEEAQAVYWHSSAHIM 160

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTR 652
             A+  + G  +         +G  +D+   +  ++S +  S+E     II +       
Sbjct: 161 GEAMERVYGGCLCYGPPI--ENGFYYDMYLEEGGVSSNDFSSLETLCKKIIKEKQTFERL 218

Query: 653 IMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + +E  +               K N     V   Y  G +    LC G HV  TG+I  
Sbjct: 219 EVKKETLLEMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPHVRHTGKIKT 273

Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
           L I   SS                        E L+ +          ++   E+  EE 
Sbjct: 274 LKIHKNSST---------------YWEGKADMETLQRIYGI-SFPDPKLLKEWEKFQEEA 317

Query: 768 RK 769
           + 
Sbjct: 318 KN 319


>gi|26326983|dbj|BAC27235.1| unnamed protein product [Mus musculus]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T+ +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 131 PLETDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 188

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 189 EEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 248

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            V   Y  G +    LC G HV  TG+I  L I   SS                      
Sbjct: 249 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSST---------------YWEGKA 288

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             E L+ +          ++   E+  EE + 
Sbjct: 289 DMETLQRIYGI-SFPDPKLLKEWEKFQEEAKN 319


>gi|73954351|ref|XP_536509.2| PREDICTED: similar to threonyl-tRNA synthetase [Canis familiaris]
          Length = 789

 Score = 44.7 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDII 643
             HS+ H++  A+  + G  +         +G  +D+   +  ++S +  S+E     II
Sbjct: 210 YWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLEEGGVSSNDFSSLEALCKKII 267

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        + +E  +               K N     V   Y  G +    LC G H
Sbjct: 268 KEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPH 322

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I   SS
Sbjct: 323 VRHTGKIKTLKIHKNSS 339


>gi|27229277|ref|NP_149065.2| threonyl-tRNA synthetase, cytoplasmic [Mus musculus]
 gi|59896669|sp|Q9D0R2|SYTC_MOUSE RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|26373003|dbj|BAB27429.2| unnamed protein product [Mus musculus]
 gi|74177703|dbj|BAE38950.1| unnamed protein product [Mus musculus]
 gi|74195699|dbj|BAE39654.1| unnamed protein product [Mus musculus]
 gi|74223282|dbj|BAE40773.1| unnamed protein product [Mus musculus]
 gi|74225376|dbj|BAE31616.1| unnamed protein product [Mus musculus]
 gi|148671337|gb|EDL03284.1| threonyl-tRNA synthetase, isoform CRA_b [Mus musculus]
          Length = 722

 Score = 44.7 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T+ +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 131 PLETDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 188

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 189 EEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 248

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            V   Y  G +    LC G HV  TG+I  L I   SS                      
Sbjct: 249 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSST---------------YWEGKA 288

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             E L+ +          ++   E+  EE + 
Sbjct: 289 DMETLQRIYGI-SFPDPKLLKEWEKFQEEAKN 319


>gi|296228691|ref|XP_002759919.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial isoform 1
           [Callithrix jacchus]
          Length = 718

 Score = 44.3 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+TH+L  A    LG+ + +  S  T +G   D    K   I  +EL  +E    ++ A
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPS--TENGFYHDFFLGKERTIRGSELPVLERICQELTA 190

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
              P      +R+                +           G      LC G H+  TG+
Sbjct: 191 AAQPFRRLEASRDQLHRLFKDNPFKLHLIEEKITGPTATVYGCGTLVDLCRGPHLRHTGQ 250

Query: 705 IM 706
           I 
Sbjct: 251 IG 252


>gi|301768134|ref|XP_002919483.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Ailuropoda
           melanoleuca]
          Length = 723

 Score = 44.3 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 190 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSS 282


>gi|55741823|ref|NP_001006977.1| threonyl-tRNA synthetase, cytoplasmic [Rattus norvegicus]
 gi|59896667|sp|Q5XHY5|SYTC_RAT RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|53734298|gb|AAH83914.1| Threonyl-tRNA synthetase [Rattus norvegicus]
          Length = 695

 Score = 44.3 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T+ +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 104 PLETDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 161

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 162 EEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 221

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            V   Y  G +    LC G HV  TG+I  L I   SS                      
Sbjct: 222 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSST---------------YWEGKA 261

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             E L+ +          ++   E+  EE + 
Sbjct: 262 DMETLQRIYGI-SFPDPKLLKEWEKFQEEAKN 292


>gi|156717366|ref|NP_001096223.1| probable threonyl-tRNA synthetase 2, cytoplasmic [Xenopus
           (Silurana) tropicalis]
 gi|123909108|sp|Q0V9S0|SYTC2_XENTR RecName: Full=Probable threonyl-tRNA synthetase 2, cytoplasmic;
           AltName: Full=Threonine--tRNA ligase; Short=ThrRS;
           AltName: Full=Threonyl-tRNA synthetase-like protein 2
 gi|111307891|gb|AAI21418.1| tarsl2 protein [Xenopus (Silurana) tropicalis]
          Length = 814

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 31/213 (14%)

Query: 564 ILRTEMSLVL-TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622
            L  + ++ L   D +   Q    HS+ H+L   +    G  +         +G  +D+ 
Sbjct: 223 PLEQDSNVELLKFDSEE-AQAVYWHSSAHILGETMENFYGGCLCYGPPI--ENGFYYDMY 279

Query: 623 HSKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRV 676
                ++S E  S+E+    II +  P     ++++  +               K +   
Sbjct: 280 LDGRGVSSNEFPSLENMCKAIIKEKQPFERLEVSKDLLLEMFKYNKFKCRILNEKVDTPT 339

Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736
             V   Y  G +    LC G HV  TG+I  L I   SS                     
Sbjct: 340 TTV---YRCGPLID--LCRGPHVRHTGKIKTLKIYKNSST---------------YWEGR 379

Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
              E L+ +          ++   E+  EE + 
Sbjct: 380 ADMETLQRIYGI-SFPDSKLMKEWEQFQEEAKN 411


>gi|295664831|ref|XP_002792967.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
 gi|226278488|gb|EEH34054.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01]
          Length = 764

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 34/205 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +  ++  +++     I  
Sbjct: 164 HSSAHVLGEACECYYGCLLSHGPP--TPQGFFYDMALEPGHVVKESDWPALDSKSARIFK 221

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++E+     A +    KY        VE E   V+       LC G H+ 
Sbjct: 222 EKQPFDRLEVSKENLKKMFAYS----KYKLHYINNLVEGESSTVYRCGTLVDLCRGPHIQ 277

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG+I ++ I+  S                A       ++ L+ +             + 
Sbjct: 278 NTGKIKVMKIMQNS---------------AAYFLGDQSNDTLQRIRGV------AFPDK- 315

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED 785
           +++ E  + L+    +  L++  E 
Sbjct: 316 KQMQEHLKFLEEAEKRNHLRIGKEQ 340


>gi|225684056|gb|EEH22340.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03]
          Length = 738

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 73/205 (35%), Gaps = 34/205 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +  ++  +++     I  
Sbjct: 139 HSSAHVLGEACECYYGCLLSHGPP--TPQGFFYDMALEPGHVVKESDWPALDSKSVRIFK 196

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++E+     A +     Y +      +E E   V+       LC G H+ 
Sbjct: 197 EKQPFDRLEVSKENLKKMFAYSKFKLHYINN----LIEGESSTVYRCGTLVDLCRGPHIQ 252

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG+I ++ I+  S                A       ++ L+ +             + 
Sbjct: 253 NTGKIKVMKIMQNS---------------AAYFLGDQSNDTLQRIRGV------AFPDK- 290

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED 785
           +++ E  + L+    +  L++  E 
Sbjct: 291 KQMQEHLKFLEEAEKRNHLRIGKEQ 315


>gi|321252491|ref|XP_003192424.1| threonine-tRNA ligase [Cryptococcus gattii WM276]
 gi|317458892|gb|ADV20637.1| Threonine-tRNA ligase, putative [Cryptococcus gattii WM276]
          Length = 771

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 11/136 (8%)

Query: 587 HSATHLLHHAL-STILGSHVSQNGSCITPDGLRFD--VTHSKPITSAELKSIEDNVNDII 643
           HS+ H+L  A      G      G  +   G  +D  + + + I+  + K IED     +
Sbjct: 192 HSSAHVLGEACERRYEGC-CLGYGPPLEEGGFFYDMGLANGRTISQDDYKPIEDVCKAAV 250

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +  P     + +E  +           Y   ++    +     V+       LC G HV
Sbjct: 251 KEKQPFERLELPKEVLLEMFKYNKYKQHY---IQDKVPDGTSSTVYRCGPLIDLCLGPHV 307

Query: 700 SSTGEIMLLYIVSESS 715
             TG I  L +   SS
Sbjct: 308 PHTGRIKSLAVTKNSS 323


>gi|255721835|ref|XP_002545852.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240136341|gb|EER35894.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 596

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 21/148 (14%)

Query: 713 ESSIRAGIRRIEAITGQRARS---------HLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
           ++ I    +R+E      A            L  +D +LK LA+ LK+    ++ + +E+
Sbjct: 240 QTGIADLEKRLEMKDNILALKEIQLSHRDKDLKAKDNQLKELANQLKIKDDELLAKEKEL 299

Query: 764 WEEYRKL----QLIHAKRKLQLNVEDLSCHKIADVNFMSHII--------SEVDSKELKS 811
            ++ ++L    + +  K + QL+ E    +   +       +         E D+K +K+
Sbjct: 300 MDKDKELLAKDKELLLKDREQLDKEKSIMNSPIETWGYETQLGKSEIKSNEEPDAKSMKN 359

Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVL 839
            ++ LQ  + S +      + +  A++ 
Sbjct: 360 DLNKLQLNMNSALCQFEMTNDQIAANLA 387


>gi|4836942|gb|AAD30644.1|AC006085_17 Hypothetical protein [Arabidopsis thaliana]
          Length = 120

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 23/93 (24%)

Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC 330
            + ++VDH+   SF IA G  P +                              L+  + 
Sbjct: 7   AYEIVVDHITIVSFAIAHGSKPES-----------------------DTVFQYRLVKFVV 43

Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363
             MG    +L + +  I + LR ++  F  T  
Sbjct: 44  RVMGDVLTQLKEHEEHITQILRIDELGFRNTKQ 76


>gi|242399561|ref|YP_002994986.1| Hydrolase, HAD superfamily [Thermococcus sibiricus MM 739]
 gi|242265955|gb|ACS90637.1| Hydrolase, HAD superfamily [Thermococcus sibiricus MM 739]
          Length = 301

 Score = 44.3 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
           L+ I + S +   IR I            +  +  +K+L+  LKV +  +  +  +  EE
Sbjct: 61  LITISNFSKVMTMIRLISFDVWNTLLDINVMIENLVKALSELLKVPEEEIAEKTIKTREE 120

Query: 767 YRKLQLIHA---KRKLQLNVEDLSCHKIADVNFMSHIISEV 804
            +K++   +   ++ L+ + E L+     DV  +   +++ 
Sbjct: 121 IKKIRKSRSGDPEKALEESQELLARALEVDVEIVKRAVAKA 161


>gi|329850858|ref|ZP_08265703.1| pyruvate, phosphate dikinase [Asticcacaulis biprosthecum C19]
 gi|328841173|gb|EGF90744.1| pyruvate, phosphate dikinase [Asticcacaulis biprosthecum C19]
          Length = 889

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 120/350 (34%), Gaps = 41/350 (11%)

Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617
           A VE     T  S    +D   R     ++    + HH+   IL  H  + G  I  D  
Sbjct: 119 ATVEGLTALTGDS-RFALDCYRRFITMYSNVVLGVNHHSFEDILDDHKDRLGVTIDTDIT 177

Query: 618 ----RFDVTHSKPITSAELKS--IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
                  +   K +  +EL     +D  + +      V    MN + A        +   
Sbjct: 178 AKDWERIIADYKAMVKSELGRDFPQDPKDQLWGAIRAVFGSWMN-DRAKFYRKMHDIPED 236

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI---MLLYIVSE-SSIRAGIRRIEAIT 727
           +   V + S+ + + G  S+     T   STG+        + ++   + AGIR  +A+T
Sbjct: 237 WGTAVNIQSMVFGNMGNTSATGVAFTRNPSTGDSDLYGEFLLNAQGEDVVAGIRTPQALT 296

Query: 728 GQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWE-----EYRK---LQLIHA 775
            ++AR  +  +    +E L  + +  K +   +     ++ +     E  K   LQ  +A
Sbjct: 297 -KKAREDMGERSLSMEESLPEVFAQFKTTVDTLENHYRDVQDVEFTVEQGKLYMLQTRNA 355

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG--ISKE 833
           KR  +  ++         +      +  +D   L  ++  +        ++  G   S  
Sbjct: 356 KRTSKAALKIAVDMAKEGLITPQEALMRIDPGTLDQLLHPMLDPKADKTVIAKGLPASPG 415

Query: 834 KKASVLIVVTEDLLDRFNAVD---LAR-----------LSAKVLGGGGGG 869
             +  ++   ED +    A +   L R            +AK +    GG
Sbjct: 416 AASGKIVFTAEDAVRYAAAGEDVILVRDETSPEDIKGMYAAKAIVTARGG 465


>gi|115389848|ref|XP_001212429.1| threonyl-tRNA synthetase [Aspergillus terreus NIH2624]
 gi|114194825|gb|EAU36525.1| threonyl-tRNA synthetase [Aspergillus terreus NIH2624]
          Length = 713

 Score = 44.3 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      TP G  +D+     + +  ++  S++   + I  
Sbjct: 127 HSSAHCLGEACECQYGCLLSHGPP--TPQGFFYDMAMPDNRVVRESDWSSLDSKASRIFK 184

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++E+     A +     Y D+     V  E   V+       LC G H+ 
Sbjct: 185 EKQSFDRLEVSKENLKKMFAYSKYKLHYIDK----LVTGEKSTVYRCGTLVDLCRGPHIQ 240

Query: 701 STGEIMLLYIVSESS 715
           +TG+I    I+  SS
Sbjct: 241 NTGKIKTFKIMQNSS 255


>gi|301095894|ref|XP_002897046.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
 gi|262108475|gb|EEY66527.1| threonyl-tRNA synthetase [Phytophthora infestans T30-4]
          Length = 725

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 20/189 (10%)

Query: 587 HSATHLLHHALSTILGSHVS-QNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVNDII 643
           HS+ H+L  AL       +   +G  +   G  +++     +T +E     +  ++  I+
Sbjct: 141 HSSAHVLGQALEDKYQDKIRLTDGPPLKEGGFFYEMFLQDGLTVSETDFDELSRSIKKIV 200

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
               P     + RE A    A +        +      E E   ++       LC G HV
Sbjct: 201 KARQPFERLQVTREFADKLFAYSDFKRDMLHK----IPEGEAISLYRCGPLIDLCRGPHV 256

Query: 700 SSTGEIMLLYIVSESSI----RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755
             TG +    I    +     +  ++R+ AI+          Q ++ + L    K     
Sbjct: 257 PHTGMLSSFEITRCGASHWEGKELLQRVYAISFPN-----NTQLKEWRHLQEEAKKRDHR 311

Query: 756 VVGRVEEIW 764
           ++GR ++++
Sbjct: 312 LIGRAQQLF 320


>gi|332170931|gb|AEE20186.1| Protein of unknown function DUF2130 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQR---ARSHLMGQDEKLKSLASFLKVSQGNV 756
               E  L     E  +     +IE  T +        L  +++K K     LK ++ ++
Sbjct: 60  KKERENELFKAKLEQRLVKEQEKIEKSTQEAFEQQLKSLQLENDKRKEENRALKSAEIDL 119

Query: 757 VGRVEEIWEEYRKLQLIHAKRKL--QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814
           + R  ++ E+  +LQL   K+ L  Q  +ED +  K  +  F+     E    + K ++D
Sbjct: 120 LKRENQLKEQAEELQLTMQKQLLESQKEIEDKARAKEREAMFLKEKEFEKKLNDQKKLID 179

Query: 815 ALQKKIQSGIIMLVGISKE 833
            +++K + G + + G  +E
Sbjct: 180 EMKRKAEQGSMQMQGEVQE 198


>gi|124027530|ref|YP_001012850.1| metal-dependent hydrolase [Hyperthermus butylicus DSM 5456]
 gi|123978224|gb|ABM80505.1| Metal-dependent hydrolase [Hyperthermus butylicus DSM 5456]
          Length = 188

 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-GAAAL 667
           G    PD    D           +    +  N I+ + + V    + RE+A+   G   L
Sbjct: 63  GGHKAPDIACDDFEIGVGDWKNAILEAVEEANRILRRCIEVRVYWLPREEALKLPGTVKL 122

Query: 668 LGTKYNDRV--RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
                 D    R+V +   + G+ + A   GTH         + IV   S   G RR
Sbjct: 123 ANRPPPDVPVLRIVEIPGVEYGL-TEARTLGTHAG----CPGIEIVKLES--KGRRR 172


>gi|302404307|ref|XP_002999991.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
 gi|261361173|gb|EEY23601.1| threonyl-tRNA synthetase [Verticillium albo-atrum VaMs.102]
          Length = 790

 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +   G  +  +G  +++       + +++ K +E  V  I+ 
Sbjct: 164 HSSAHILGEACERRFGCSLCI-GPPVD-NGFYYEMALPGGASVQASDWKPLESIVGSIVK 221

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
           +        M +++ +   +          D++   +            LC G HV ST 
Sbjct: 222 EKQKFERLEMTKDELLEMFSYNKYKQHIIKDKIADGTKTTVYRNGPLIDLCRGPHVPSTE 281

Query: 704 EIMLLYIVSESS 715
            I    I+  S+
Sbjct: 282 RIEAFSIMKNSA 293


>gi|255072625|ref|XP_002499987.1| hypothetical protein MICPUN_56305 [Micromonas sp. RCC299]
 gi|226515249|gb|ACO61245.1| hypothetical protein MICPUN_56305 [Micromonas sp. RCC299]
          Length = 201

 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT---EDLLD 848
            ++  +   +  +++       D  ++K  SG I  + IS+ +KA  + +V    ED+ D
Sbjct: 59  GNIKLLEAAMEGMNAVPDPE--DPEERKGCSGHIAKLIISENEKAGAIAMVAYVPEDMKD 116

Query: 849 RFNAVDLARLSAKVLGGGGGGGRPH 873
           + NA++  +   +   GGG GG P 
Sbjct: 117 KLNAIEWMKAVCETDLGGGVGGAPD 141


>gi|194223978|ref|XP_001498225.2| PREDICTED: threonyl-tRNA synthetase [Equus caballus]
          Length = 722

 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 131 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 188

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 189 DEGGVSSNDFSSLEGLCKKIIKEKQAFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 248

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 249 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSS 281


>gi|121535635|ref|ZP_01667441.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
 gi|121305805|gb|EAX46741.1| threonyl-tRNA synthetase [Thermosinus carboxydivorans Nor1]
          Length = 513

 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 14/120 (11%)

Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALC 694
           +  I+ +++PV    ++RE+A+        G  Y   +     E     ++       LC
Sbjct: 1   MEKIVKEDMPVERMEVSREEALRLFTEQ--GEVYKVELIRDLPEDVTISLYRQGEFIDLC 58

Query: 695 GGTHVSSTGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            G HV STG +  + + S +         R  ++RI   T    ++ L      L+  A 
Sbjct: 59  AGPHVPSTGRVKAIKLQSLAGAYWRGDEKRKMLQRIYG-TAFEKKADLDAYLRMLEEAAK 117


>gi|328855773|gb|EGG04898.1| hypothetical protein MELLADRAFT_37217 [Melampsora larici-populina
           98AG31]
          Length = 687

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 15/138 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFD----VTHSKPITSAELKSIEDNVNDI 642
           HS+ H+L  A     G H+       T DG  ++    V+  + + +A+   +E      
Sbjct: 112 HSSAHVLGEAAERHYGCHLCIGPP--TDDGFFYEMGMGVSGDRSVQNADYHPLEKVAESA 169

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGT 697
           I +       +++++  +   A      KY   +    +                LC G 
Sbjct: 170 IKEKQRFERLVISKKSLLEMFAYN----KYKTHIINSKIPDGTSTTVYRCGPMIDLCVGP 225

Query: 698 HVSSTGEIMLLYIVSESS 715
           H+ +TG I    I+  S+
Sbjct: 226 HIPNTGYIKSFSILKNSA 243


>gi|126321714|ref|XP_001373481.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 723

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VT 622
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D   
Sbjct: 132 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  ++E     II +        + +E  +               K N    
Sbjct: 190 ENGGVSSNDFSALETLCKKIIKEKQLFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSS 282


>gi|74142262|dbj|BAE31895.1| unnamed protein product [Mus musculus]
          Length = 722

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 29/212 (13%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T+ +L L        Q    HS  H++  A+  + G  +         +G  +D+  
Sbjct: 131 PLETDCTLELLKFEDEEAQAVYWHSNAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 188

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +               K N    
Sbjct: 189 EEGGVSSNDFSSLETLCKKIIKEKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 248

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
            V   Y  G +    LC G HV  TG+I  L I   SS                      
Sbjct: 249 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSST---------------YWEGKA 288

Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
             E L+ +          ++   E+  EE + 
Sbjct: 289 DMETLQRIYGI-SFPDPKLLKEWEKFQEEAKN 319


>gi|77735697|ref|NP_001029542.1| threonyl-tRNA synthetase, cytoplasmic [Bos taurus]
 gi|110287979|sp|Q3ZBV8|SYTC_BOVIN RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|73586669|gb|AAI03083.1| Threonyl-tRNA synthetase [Bos taurus]
 gi|296475710|gb|DAA17825.1| threonyl-tRNA synthetase [Bos taurus]
          Length = 723

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 96/308 (31%), Gaps = 46/308 (14%)

Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473
           D      A EE++          GSG   +   +   +Y  T+   Y+ L          
Sbjct: 15  DEEKPVGAGEEKQKEGSKKKNKEGSGDGGRAELNPWPEYINTRLEMYNKL---------- 64

Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533
           K        +     S  +K  +  G+ V+              TP+    G   G    
Sbjct: 65  KAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESW--------KTTPYQIACGISQGLADN 116

Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593
            +   +   + D+ +  E            +L+ E      + +         HS+ H++
Sbjct: 117 TVIAKVNKAVWDLDRPLE------EDCTLELLKFEDEEAQAVYW---------HSSAHIM 161

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKP-ITSAELKSIEDNVNDIIAQNLPVVTR 652
             A+  + G  +         +G  +D+   +  ++S +  S+E     II +       
Sbjct: 162 GEAMERVYGGCLCYGPPI--ENGFYYDMYLEEGGVSSNDFSSLETLCKKIIKEKQAFERL 219

Query: 653 IMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            + +E  +               K N     V   Y  G +    LC G HV  TG+I  
Sbjct: 220 EVKKETLLEMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPHVRHTGKIKT 274

Query: 708 LYIVSESS 715
           L I   SS
Sbjct: 275 LKIHKNSS 282


>gi|47155079|emb|CAG27298.1| putative alanyl tRNA synthetase [Candida orthopsilosis]
          Length = 141

 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 10/125 (8%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           ++ K+K L   LK    +V+ + +           I +  + +Q   +K+ L +  + L 
Sbjct: 17  KENKVKELGVSLKKLSISVLDKQKLTEKFNKVDKSIKDHQKSIQKEESKKTLDVVKKWLD 76

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                    ++HI    ++K +    + ++K+ ++  + L+    +K A    V  E + 
Sbjct: 77  DGDNKSEFLVAHIPINANAKAITEAFNLVKKQDKTKSLYLLTGQNDKVAHGCYVSDEAIG 136

Query: 848 DRFNA 852
              +A
Sbjct: 137 KGVDA 141


>gi|81429010|ref|YP_396010.1| threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
 gi|123742216|sp|Q38VT0|SYT_LACSS RecName: Full=Threonyl-tRNA synthetase; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|78610652|emb|CAI55703.1| Threonyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K]
          Length = 656

 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTI-DYQNRRQLSINHSATHLLHHALSTILGSHV 605
           +K   G F    +  +  L  + ++ +   D Q     +  H+A  +L   LS      +
Sbjct: 35  KKAIAGKFNGEVVDLQQPLLEDGAIEIITKDDQAVNLTATWHTAAFVLAATLSQHYPE-M 93

Query: 606 SQNGSCITPDGLRFDVT-HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
                  T DG  +D    +  +   +L  I+  +  +I     +    ++++DA    A
Sbjct: 94  QFGEVTATEDGFYYDTDNEAGQVAVTDLPEIKTEMAKLIQSGEAISRVSVSKDDAKKLFA 153

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSS 691
                    D V    V     G +S 
Sbjct: 154 GQTYKLALLDEVEADQVLVYQLGDYSD 180


>gi|153824261|ref|ZP_01976928.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
 gi|126518216|gb|EAZ75441.1| threonyl-tRNA synthetase [Vibrio cholerae B33]
          Length = 345

 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGV 688
            +L+ IE  + ++      VV + ++ ++A  +  +   G  Y   +   +V  +D  G+
Sbjct: 2   EDLEKIEARMVELAKTKYAVVKKKVSWQEARDTFESR--GESYKMEILDENVARDDRPGL 59

Query: 689 HSSA----LCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
           +       +C G HV   G      ++   +I     R
Sbjct: 60  YHHEEYIDMCRGPHVPHMGFCQNFKLL---NIAGAYWR 94


>gi|327264441|ref|XP_003217022.1| PREDICTED: keratin, type II cuticular Hb4 [Anolis carolinensis]
          Length = 555

 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 19/229 (8%)

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             +N   +  +  R  +  +K     E        N+ +     V    M + +  A   
Sbjct: 208 WERNQLQVEVNNWRDTMEGNKKKYEEEYNRRASAENEYVTLKKEVDYIFMEKSEKEAKVE 267

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE-----SSIRAG 719
             +    +        +      +  +  C    + ++ ++ +  I+ E       I + 
Sbjct: 268 TLMQDIFFYKTTFEEEICEMQSSISDT--CVTVKMDNSRDLDVACIIEEFRCRYEDIASR 325

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            R         A +    Q ++LK+ A+    +  N    +EE+     +LQ   A  K 
Sbjct: 326 SR-------AEAEAWCQCQYQELKTTAAKHSDNLRNFKDELEELTRTVNRLQAEIANVKA 378

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSK-ELKSVMDALQKKIQSGIIML 827
           Q    +       +   M+      D+K +L  + DAL K  Q     L
Sbjct: 379 QRCKLEEEVAGAEERGEMAVK----DAKCKLFDLEDALHKAKQDMACQL 423


>gi|208972045|gb|ACI32636.1| keratin aHB2 [Anolis carolinensis]
          Length = 555

 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 19/229 (8%)

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
             +N   +  +  R  +  +K     E        N+ +     V    M + +  A   
Sbjct: 208 WERNQLQVEVNNWRDTMEGNKKKYEEEYNRRASAENEYVTLKKEVDYIFMEKSEKEAKVE 267

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE-----SSIRAG 719
             +    +        +      +  +  C    + ++ ++ +  I+ E       I + 
Sbjct: 268 TLMQDIFFYKTTFEEEICEMQSSISDT--CVTVKMDNSRDLDVACIIEEFRCRYEDIASR 325

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            R         A +    Q ++LK+ A+    +  N    +EE+     +LQ   A  K 
Sbjct: 326 SR-------AEAEAWCQCQYQELKTTAAKHSDNLRNFKDELEELTRTVNRLQAEIANVKA 378

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSK-ELKSVMDALQKKIQSGIIML 827
           Q    +       +   M+      D+K +L  + DAL K  Q     L
Sbjct: 379 QRCKLEEEVAGAEERGEMAVK----DAKCKLFDLEDALHKAKQDMACQL 423


>gi|154278048|ref|XP_001539849.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
 gi|150413434|gb|EDN08817.1| threonyl-tRNA synthetase [Ajellomyces capsulatus NAm1]
          Length = 733

 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +  ++  +++     I  
Sbjct: 139 HSSAHVLGEACECYYGCLLSHGPP--TPQGFFYDMALEPGHVVKESDWPALDTKAARIFK 196

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++ D     A +    KY        VE E   V+       LC G H+ 
Sbjct: 197 EKQPFDRLEVSKSDLKKMFAYS----KYKLHYINNLVEGESSTVYRCGTLVDLCRGPHIQ 252

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +TG+I ++ I+  S+           ++RI  +    A        E LK L    K
Sbjct: 253 NTGKIKIMKIMQNSAAYFLGDQSNDALQRIRGV----AFPDKKQMQEHLKFLEEAEK 305


>gi|226293450|gb|EEH48870.1| threonyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18]
          Length = 738

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 34/205 (16%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +  ++  +++     I  
Sbjct: 139 HSSAHVLGEACECYYGCLLSHGPP--TPQGFFYDMALEPGHVVKESDWPALDSKSVRIFK 196

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++E+     A +     Y +      VE E   V+       LC G H+ 
Sbjct: 197 EKQPFDRLEVSKENLKKMFAYSKFKLHYINN----LVEGESSTVYRCGTLVDLCRGPHIQ 252

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
           +TG+I ++ I+  S                A       ++ L+ +             + 
Sbjct: 253 NTGKIKVMKIMQNS---------------AAYFLGDQSNDTLQRIRGV------AFPDK- 290

Query: 761 EEIWEEYRKLQLIHAKRKLQLNVED 785
           +++ E  + L+    +  L++  E 
Sbjct: 291 KQMQEHLKFLEEAEKRNHLRIGKEQ 315


>gi|240280652|gb|EER44156.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H143]
 gi|325089093|gb|EGC42403.1| threonyl-tRNA synthetase [Ajellomyces capsulatus H88]
          Length = 733

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +  ++  +++     I  
Sbjct: 139 HSSAHVLGEACECYYGCLLSHGPP--TPQGFFYDMALEPGHVVKESDWPALDTKAARIFK 196

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++ D     A +    KY        VE E   V+       LC G H+ 
Sbjct: 197 EKQPFDRLEVSKSDLKKMFAYS----KYKLHYINNLVEGESSTVYRCGTLVDLCRGPHIQ 252

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +TG+I ++ I+  S+           ++RI  +    A        E LK L    K
Sbjct: 253 NTGKIKIMKIMQNSAAYFLGDQSNDALQRIRGV----AFPDKKQMQEHLKFLEEAEK 305


>gi|72391278|ref|XP_845933.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62175278|gb|AAX69423.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802469|gb|AAZ12374.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 608

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 84/253 (33%), Gaps = 25/253 (9%)

Query: 571 LVLTIDYQNRR-QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
           +   ID   R    +   +A   +  AL      H+           LRF     +    
Sbjct: 111 VWAQIDSDYRSGDSARQETAAQEISAALRGEPNDHMRWVYETKRE--LRFAGPVGRRAIQ 168

Query: 630 AELKSIE--DNVNDIIAQNLPVVTRIMNRE-DAIASGAAALLGTKYNDRVRVVSVEYEDG 686
            EL++ E  + +++ + +   +   +M  E +  A    A        +     ++    
Sbjct: 169 EELQAAELPEVLDEEVNRYHDLKLNMMEIEREVKAKYGVA-------GQQHWAELQAAKD 221

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746
             +   L     V          ++ +S+     RR E    QR+    + Q +     A
Sbjct: 222 EEYIQKLDEAAEVYKQ-------LLDQSARLDESRRSEL---QRSYVERVHQAQVRFKAA 271

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVD 805
             L+  +  ++   + + EE  + +    +R+L     +L        + ++ +   ++D
Sbjct: 272 MELEGQREQLIEAHQAMKEERMRTEREK-RRQLLREAAELRAQGKESADVLTALKERQLD 330

Query: 806 SKELKSVMDALQK 818
           +   +     L++
Sbjct: 331 ANAKRQAEYELKE 343


>gi|134298523|ref|YP_001112019.1| hypothetical protein Dred_0655 [Desulfotomaculum reducens MI-1]
 gi|134051223|gb|ABO49194.1| hypothetical protein Dred_0655 [Desulfotomaculum reducens MI-1]
          Length = 96

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 502 VEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA 558
           V+  + GQ K+ ++F++T F     G   D G  + + +R   ++  V+++ EGI    A
Sbjct: 18  VKGFIEGQGKIGLIFEETIFSPTTDGNPSDRGTLVCETLRATYEVLLVEQRPEGIVHWIA 77

Query: 559 IVERGILRTEMSLVLTIDYQN 579
              +  +    S+++T+D   
Sbjct: 78  GTPKPTI--GASVLMTLDRDR 96


>gi|148675291|gb|EDL07238.1| threonyl-tRNA synthetase-like 2, isoform CRA_a [Mus musculus]
          Length = 365

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 601 LGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            G H+         +G  +D     + ++S EL ++E+    II +  P     ++++  
Sbjct: 5   YGGHLCYGPPI--ENGFYYDMFIEDRVVSSTELSALENICKTIIKEKQPFERLEVSKDTL 62

Query: 660 IA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +           +L  K +     V   Y  G +    LC G HV  TG+I  + I   S
Sbjct: 63  LEMFKYNKFKCRILKEKVDTPTTTV---YRCGPLID--LCKGPHVRHTGKIKAIKIFKNS 117

Query: 715 S 715
           S
Sbjct: 118 S 118


>gi|281421522|ref|ZP_06252521.1| phosphoribulokinase family protein [Prevotella copri DSM 18205]
 gi|281404594|gb|EFB35274.1| phosphoribulokinase family protein [Prevotella copri DSM 18205]
          Length = 553

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 90/251 (35%), Gaps = 30/251 (11%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           +   +L  A+  I  +        ++ +G   D+   +P+   ++  I   + +II   +
Sbjct: 78  TLFFVLCKAVQDIYPATDVVIDIPVS-NGFYVDIRLGRPVVDEDVNIIRRRMQEIIDARM 136

Query: 648 PVVTRIMNREDAIASGAAA--LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
           P+    +  E+A+A       +   K       +   Y   G +      GT +++T ++
Sbjct: 137 PIRRFTVPTEEAVALFQEKGDVEKVKLLKTSGAIYTTYYKIGDYVDYY-YGTLLTNTSQL 195

Query: 706 MLLYIVSESSIRAGI-RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
            L           G+  RI ++        +  QD+                     EI+
Sbjct: 196 YLF---GLEKYYDGMLLRIPSLKNPDVLGEMTRQDKMF-------------------EIF 233

Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824
           +E+ + Q I   R +    + +  +    +  +S  + E   K++  + + +  +    +
Sbjct: 234 KEHHRWQSILGIRTVGDFNQAIDANYSTGIINISEALQE---KKIAKIAEEIASRKGVKL 290

Query: 825 IMLVGISKEKK 835
           ++L G S   K
Sbjct: 291 VLLAGPSSSGK 301


>gi|320165002|gb|EFW41901.1| Tarsl2 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 777

 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQ-NGSCITPDGLRFD---VTHSKPITSAELKSIEDNVNDI 642
           HSA H+L  A+  + G  V   +G  I+  G  ++         I++ +L  +       
Sbjct: 142 HSAAHVLGAAMEEVYGDDVVLCDGPAISEGGFFYEGMLANGRGSISTTDLAPLVAKATAF 201

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV------SVEYEDGGVHSSALCGG 696
           I+   P     ++  DA+A          +  +           +     G     LC G
Sbjct: 202 ISAKHPYQRVSVSVADALAMFPENPFKQHFIRKAAAAAAPSSPLISIYRCGDF-VDLCRG 260

Query: 697 THVSSTGEIMLL 708
            H+ +TG +  +
Sbjct: 261 PHIINTGVVGAI 272


>gi|198425233|ref|XP_002123203.1| PREDICTED: similar to novel prtoein similar to vertebrate
           threonyl-tRNA synthetase (TARS, zgc:92586) [Ciona
           intestinalis]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 4/154 (2%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L T+  L L        Q    HS  H+L  A+    G  +          G  +D+  
Sbjct: 26  PLETDAKLQLLKFDDEEAQTVYWHSTAHILGEAMERTYGGCLCYGPPI--EQGFYYDMFM 83

Query: 624 SKPITSA--ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681
                S   +  ++E+ +  I+ +  P     + +E+ +   A      +  +       
Sbjct: 84  DGRQVSDKNDFPAVENVMKSILKEKQPFERLEVTKENLLKMFAYNPFKLRILNEKVTTPT 143

Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
                      LC G HV  TG+I    +   S+
Sbjct: 144 TTVYRCGPLIDLCRGPHVRHTGKIKAFQLYKNSA 177


>gi|148675292|gb|EDL07239.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Mus musculus]
          Length = 559

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 601 LGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659
            G H+         +G  +D     + ++S EL ++E+    II +  P     ++++  
Sbjct: 5   YGGHLCYGPPI--ENGFYYDMFIEDRVVSSTELSALENICKTIIKEKQPFERLEVSKDTL 62

Query: 660 IA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714
           +           +L  K +     V   Y  G +    LC G HV  TG+I  + I   S
Sbjct: 63  LEMFKYNKFKCRILKEKVDTPTTTV---YRCGPLID--LCKGPHVRHTGKIKAIKIFKNS 117

Query: 715 S 715
           S
Sbjct: 118 S 118


>gi|50555740|ref|XP_505278.1| YALI0F11231p [Yarrowia lipolytica]
 gi|49651148|emb|CAG78085.1| YALI0F11231p [Yarrowia lipolytica]
          Length = 755

 Score = 43.5 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAEL 632
           D   R      HS+ H+L  A     G+H+       T DG  ++++       + + + 
Sbjct: 163 DEGKRV---FWHSSAHVLGEATERHYGAHLCIGPP--TEDGFFYEMSIDNGDTHVQACDY 217

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             +E      I         ++++E+ +   A      KY   +    +           
Sbjct: 218 DPLETVAKSAIKDKQKFERLVLSKENLLKMFAYN----KYKVELIQKKIPDGTSTTVYRC 273

Query: 693 -----LCGGTHVSSTGEIMLLYIVSESS 715
                LC G H+  TG+I    ++  SS
Sbjct: 274 GPLIDLCVGPHIPHTGKIKAFKLLKNSS 301


>gi|70938459|ref|XP_739899.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56517239|emb|CAH81031.1| hypothetical protein PC000376.04.0 [Plasmodium chabaudi chabaudi]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQ 645
           HS+ H+L  +L  I G +++   +    +G  +D+   +  I S +   IE+  N ++ +
Sbjct: 158 HSSAHILGSSLEKIYGGYLTIGPALN--EGFYYDIYLGNNSIVSDDYTKIENEYNKLVKE 215

Query: 646 NLPVVTRIMNREDAIASGAAALLGTK 671
           N+     +  +E+ +          +
Sbjct: 216 NVEFEKMVCTKEEVLELFKYNPFKIE 241


>gi|553596|gb|AAA59888.1| cellular myosin heavy chain [Homo sapiens]
          Length = 1337

 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|323493656|ref|ZP_08098777.1| type IV pilus assembly protein PilB [Vibrio brasiliensis LMG 20546]
 gi|323312179|gb|EGA65322.1| type IV pilus assembly protein PilB [Vibrio brasiliensis LMG 20546]
          Length = 560

 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 13/135 (9%)

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            H L  A+  + G  V+      + +    D+     I+  EL S+ED   D    + PV
Sbjct: 128 FHKLQGAIRRVYGKSVTH--GTYSREISEQDLAALVNISEEELSSVEDLTQD----DAPV 181

Query: 650 VTRIMN-REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708
              I    +DA+   A+ +    Y ++   V +  +   V S       H  S      L
Sbjct: 182 SRYINQILQDAVRKCASDIHFEPY-EQSYRVRMRCDGLLVESQQP---PHHLSRRLATRL 237

Query: 709 YIVSESSIRAGIRRI 723
            I+S+  I    RR+
Sbjct: 238 KILSKLDIAE--RRL 250


>gi|225560803|gb|EEH09084.1| threonyl-tRNA synthetase [Ajellomyces capsulatus G186AR]
          Length = 750

 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +  ++  +++     I  
Sbjct: 139 HSSAHVLGEACECYYGCLLSHGPP--TPQGFFYDMALEPGHVVKESDWPALDTKAARIFK 196

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++ D     A +    KY        VE E   V+       LC G H+ 
Sbjct: 197 EKQPFDRLEVSKSDLKKMFAYS----KYKLHYINNLVEGESSTVYRCGTLVDLCRGPHIQ 252

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
           +TG+I ++ I+  S+           ++RI  +    A        E LK L    K
Sbjct: 253 NTGKIKIMKIMQNSAAYFLGDQSNDALQRIRGV----AFPDKKQMQEHLKFLEEAEK 305


>gi|283780616|ref|YP_003371371.1| hypothetical protein Psta_2845 [Pirellula staleyi DSM 6068]
 gi|283439069|gb|ADB17511.1| hypothetical protein Psta_2845 [Pirellula staleyi DSM 6068]
          Length = 294

 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 15/130 (11%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             E+  +   +  S+ A  +R+E    + A+     + +  K++A+ LK +Q  ++   +
Sbjct: 86  EKELAAIRTQASESVAAATKRLE---QETAKKVAAIKADAEKAIAAQLKSAQDEMIASFK 142

Query: 762 EIW-EEYRKLQLIHAKRKLQLN----------VEDLSCHKIADVNFMSHIISEVDSKELK 810
           ++  +  + L+   AK K +              D        V  +S  + +  +K  +
Sbjct: 143 KLQGDNSKSLEDALAKLKAENADAVKSSSTKLASDNEAAMKKAVEGLSGNVKDQFAKLPE 202

Query: 811 SV-MDALQKK 819
            V  + L+ K
Sbjct: 203 MVAAEVLKSK 212


>gi|29436380|gb|AAH49849.1| MYH9 protein [Homo sapiens]
          Length = 1374

 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|51557599|gb|AAU06440.1| surface antigen [Rickettsia helvetica]
          Length = 1141

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  Q    +     LK     +  +++ + ++ ++L  +    +L+   +        
Sbjct: 317 QRLHKQLTSSQKTTEALKSKAEEIEKKIKILSDQNKELDNLSKGARLKSTQKQDKIKIGK 376

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           + + +  +  E+ SK   + +D L KKI   +  +V    + KA V
Sbjct: 377 NKDKIKKLEKELISKN--NEVDRLSKKIDISVNKVVLTKPQGKAPV 420


>gi|327356150|gb|EGE85007.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188]
          Length = 770

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 23/177 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +   +  +++     I  
Sbjct: 163 HSSAHVLGEACECHYGCLLSHGPP--TPQGFFYDMALESGHVVKEGDWPALDAKAARIFK 220

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++ED     A +    KY        VE E   V+       LC G H+ 
Sbjct: 221 EKQPFDRLEVSKEDLKKMFAYS----KYKLHYINNLVEGESSTVYRCGTLVDLCRGPHIQ 276

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            TG+I ++ I+  S+           ++RI  +    A        E LK L    K
Sbjct: 277 HTGKIKIMKIMQNSAAYFLGDQSNDALQRIRGV----AFPDKKQMQEHLKFLEEAEK 329


>gi|242058501|ref|XP_002458396.1| hypothetical protein SORBIDRAFT_03g032760 [Sorghum bicolor]
 gi|241930371|gb|EES03516.1| hypothetical protein SORBIDRAFT_03g032760 [Sorghum bicolor]
          Length = 1296

 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---WEEYRKLQLIHAKRKLQ--LNVED 785
           AR  L       +     LKV++  +  RVEE+    +  +KL++   K K +    +++
Sbjct: 51  ARKELRKLRMAARD-TQALKVAKEKLEERVEELTSRLDREKKLRVDLEKSKAEEVSKLKE 109

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE- 844
                   V  +  +  +  +K  K+V +AL ++ +   I L+    E   ++L+   E 
Sbjct: 110 ALQEMEQRVEEVKAMQEQESAK--KAVEEALAQEREK--ISLLTTEIEGLKALLVAEREE 165

Query: 845 -DLLDRFNAVDL 855
            D+  + +A  L
Sbjct: 166 NDVAKKAHANAL 177


>gi|218199392|gb|EEC81819.1| hypothetical protein OsI_25560 [Oryza sativa Indica Group]
          Length = 717

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358
           Y +R      +    +LGY+   M  L+ A    M   +PEL+  +  I++ +  E+  F
Sbjct: 5   YYIRSSALMHIIVLEVLGYSIAYMRCLVSAFIESMSGDFPELLHNEKKIKDIIAEEEITF 64

Query: 359 G 359
            
Sbjct: 65  A 65


>gi|114559283|ref|XP_001168777.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 3 [Pan
           troglodytes]
          Length = 666

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 81  HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 140

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 141 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 200


>gi|114559273|ref|XP_001168878.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 6 [Pan
           troglodytes]
          Length = 684

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 193 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 252


>gi|114559271|ref|XP_001168925.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 8 [Pan
           troglodytes]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 193 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 252


>gi|114559269|ref|XP_001168944.1| PREDICTED: threonyl-tRNA synthetase-like 1 isoform 9 [Pan
           troglodytes]
          Length = 718

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 193 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 252


>gi|62897187|dbj|BAD96534.1| threonyl-tRNA synthetase-like 1 variant [Homo sapiens]
          Length = 718

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 193 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 252


>gi|39644807|gb|AAH07824.2| TARS2 protein [Homo sapiens]
          Length = 709

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 124 HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 183

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 184 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 243


>gi|20070344|ref|NP_079426.2| threonyl-tRNA synthetase, mitochondrial precursor [Homo sapiens]
 gi|74752395|sp|Q9BW92|SYTM_HUMAN RecName: Full=Threonyl-tRNA synthetase, mitochondrial; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS; AltName:
           Full=Threonyl-tRNA synthetase-like 1; Flags: Precursor
 gi|12802990|gb|AAH00541.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|14603040|gb|AAH09997.1| Threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|55958996|emb|CAI15488.1| threonyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens]
 gi|119573933|gb|EAW53548.1| threonyl-tRNA synthetase-like 1, isoform CRA_a [Homo sapiens]
 gi|168275836|dbj|BAG10638.1| threonyl-tRNA synthetase [synthetic construct]
          Length = 718

 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+TH+L  A    LG+ + +  S        F +   + I  +EL  +E    ++ A  
Sbjct: 133 HSSTHVLGAAAEQFLGAVLCRGPSTEYGFYHDFFLGKERTIRGSELPVLERICQELTAAA 192

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706
            P      +R+                +           G      LC G H+  TG+I 
Sbjct: 193 RPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIG 252


>gi|84995472|ref|XP_952458.1| falcilysin [Theileria annulata strain Ankara]
 gi|65302619|emb|CAI74726.1| falcilysin, putative [Theileria annulata]
          Length = 1181

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 28/281 (9%)

Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA-KLLIEETLR--SEDERFGKTL 362
           ++ + +  L GY + L    L  +     ++  E+++  + ++   L   +E+      +
Sbjct: 491 KKVLVHGFLSGYKQSLFSFGLKGVDNTKHNSKDEIVRKFEEVVFGILNKITEEGFKRDAI 550

Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKL--------YDTHGLPLDIMQDILCARGLAGID 414
           D GL L++  +  L       G +   L         D  GL L     +   R     D
Sbjct: 551 DSGLNLVEFEMRELNSGSYPKGLMLIDLIQSQLQYGKDPFGL-LRFDSLMKELRSRIFSD 609

Query: 415 IISFN------QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468
             S        + +    +R   H   + +   EK +          +       +  + 
Sbjct: 610 NPSNYFINLIVKHMLNNNTRVTVHLQAVEASKYEKEFNKKIADQLRERLSHLSKEQVDEM 669

Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528
            +  +K   ++  +D+ +G  S+    +      +E +           T FY  +   L
Sbjct: 670 EEYYKKFKAEREDMDINDGSESLKTLELSDISREQETIP----------TKFYKLSSDGL 719

Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569
            ++     DG    +      + G+      +    L  + 
Sbjct: 720 SESNALYNDGKTFTVLTHPIDSHGVLYMDYALSLDSLTVDD 760


>gi|83768787|dbj|BAE58924.1| unnamed protein product [Aspergillus oryzae]
          Length = 387

 Score = 43.1 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 19/217 (8%)

Query: 387 AFKLYDTHGLP-LDIMQDI--LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443
            F     +G   +DI  +      RG    D   F + L+E R + +   +   +     
Sbjct: 148 LFSFLSQYGFDGVDIDWEYPGAEERGGRPTDKEDFTKLLQEMRQQFQNKYVITFAAPLAS 207

Query: 444 IW---FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500
            +   + LK    A  +I           + D+K        D+  GV + ++A V   +
Sbjct: 208 YYLQNYDLKSASEAVDWINVMAYDIHGTWESDKKAAGHTNLTDVNKGVENYLQAGVAPNK 267

Query: 501 IV-EEAVSGQKVEVVF-----DQTPFY-AEAGGQ-LGDTGCAIGDGIRLQITDVQKKAE- 551
           +V   A  G+ V++          PF    A GQ +   G      I+  I+   K    
Sbjct: 268 VVLGTAFYGRSVKLASGGCTQPGCPFVGPGAEGQCVKTAGYLSYTEIQDIISGGAKPVFD 327

Query: 552 --GIFVHHAIVERGILRTEM--SLVLTIDYQNRRQLS 584
             G   H        +  +   ++ + +DY  R+ L 
Sbjct: 328 QAGSVQHLTWGGDNWVSYDDPQTIKIKVDYARRKGLR 364


>gi|154300294|ref|XP_001550563.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
 gi|150856659|gb|EDN31851.1| hypothetical protein BC1G_11336 [Botryotinia fuckeliana B05.10]
          Length = 787

 Score = 42.8 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 11/145 (7%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           + + RR     HS+ H+L  A     G  +               + +   +T A+ K +
Sbjct: 149 NEEGRR--VFWHSSAHILGEASERRFGCSLCIGPPIDNGFYYEMGLPNQGTVTDADWKPL 206

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS---- 691
           E  V  I+ +       +++++D +          KY   +    +              
Sbjct: 207 ETLVGQIVKEKQKFERLVLSKDDLLEMF----KDNKYKQHIIKDKIADGTNTTVYRNGPL 262

Query: 692 -ALCGGTHVSSTGEIMLLYIVSESS 715
             LC G HV +TG I    I+  S+
Sbjct: 263 IDLCRGPHVPNTGRIETFAIMKNSA 287


>gi|261203861|ref|XP_002629144.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
 gi|239586929|gb|EEQ69572.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081]
          Length = 747

 Score = 42.8 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 23/177 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +   +  +++     I  
Sbjct: 140 HSSAHVLGEACECHYGCLLSHGPP--TPQGFFYDMALESGHVVKEGDWPALDAKAARIFK 197

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++ED     A +    KY        VE E   V+       LC G H+ 
Sbjct: 198 EKQPFDRLEVSKEDLKKMFAYS----KYKLHYINNLVEGESSTVYRCGTLVDLCRGPHIQ 253

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            TG+I ++ I+  S+           ++RI  +    A        E LK L    K
Sbjct: 254 HTGKIKIMKIMQNSAAYFLGDQSNDALQRIRGV----AFPDKKQMQEHLKFLEEAEK 306


>gi|126723142|ref|NP_001075836.1| rho-associated protein kinase 1 [Oryctolagus cuniculus]
 gi|47605964|sp|O77819|ROCK1_RABIT RecName: Full=Rho-associated protein kinase 1; AltName: Full=Corneal
            epithelial Rho-associated-Ser/Thr kinase 1; AltName:
            Full=HEBM1; AltName: Full=Rho-associated,
            coiled-coil-containing protein kinase 1; AltName:
            Full=cAMP-dependent protein kinase ROCK-I; Short=CePKA;
            AltName: Full=p160 ROCK-1; Short=p160ROCK
 gi|3628755|gb|AAC36189.1| corneal epithelial Rho-associated-ser/thr kinase [Oryctolagus
            cuniculus]
          Length = 1354

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 704  EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763
            E     +  ES   A   R E      A S L   +  L      L+     +  ++ + 
Sbjct: 910  EEQYFELTQESKKAASRNRQEITDKDHAVSRLEETNSILTKDIELLRKENEELTDKMRKS 969

Query: 764  WEEY---RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD--ALQK 818
             EEY   ++ ++ + K   + N+      K   VN ++ I++  D K  K   +   L+K
Sbjct: 970  EEEYKLQKEEEISNLKATYEKNINTERTLKTQAVNKLAEIMNRKDFKIDKKKANTQDLRK 1029

Query: 819  KIQSG 823
            K +  
Sbjct: 1030 KEKEN 1034


>gi|239608840|gb|EEQ85827.1| threonyl-tRNA synthetase [Ajellomyces dermatitidis ER-3]
          Length = 747

 Score = 42.8 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 23/177 (12%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+       +   +  +++     I  
Sbjct: 140 HSSAHVLGEACECHYGCLLSHGPP--TPQGFFYDMALESGHVVKEGDWPALDAKAARIFK 197

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +  P     +++ED     A +    KY        VE E   V+       LC G H+ 
Sbjct: 198 EKQPFDRLEVSKEDLKKMFAYS----KYKLHYINNLVEGESSTVYRCGTLVDLCRGPHIQ 253

Query: 701 STGEIMLLYIVSESS-------IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
            TG+I ++ I+  S+           ++RI  +    A        E LK L    K
Sbjct: 254 HTGKIKIMKIMQNSAAYFLGDQSNDALQRIRGV----AFPDKKQMQEHLKFLEEAEK 306


>gi|310796349|gb|EFQ31810.1| threonyl-tRNA synthetase [Glomerella graminicola M1.001]
          Length = 791

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK--PITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +   G  +  +G  +++       + +++ K +E  V  I+ 
Sbjct: 156 HSSAHILGEACERRFGCSLCI-GPPVD-NGFYYEMALPGGAAVQASDWKPLESIVGSIVK 213

Query: 645 QNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699
           +        + +E  +           ++  K  D  +     Y +G +    LC G HV
Sbjct: 214 EKQKFERLELTKEQLLEMFSYNKYKQHIINDKIPDGTKTTV--YRNGPLID--LCRGPHV 269

Query: 700 SSTGEIMLLYIVSESS 715
            ST  I    I+  S+
Sbjct: 270 PSTDRIEAFSIMKNSA 285


>gi|224090286|ref|XP_002193839.1| PREDICTED: threonyl-tRNA synthetase [Taeniopygia guttata]
          Length = 711

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VT 622
            L  + SL L        Q    HS+ H++  A+  I G  +         +G  +D   
Sbjct: 120 PLEEDCSLELLKFEDEEAQAVYWHSSAHIMGEAMERIYGGCLCYGPPI--ENGFYYDMFL 177

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
               ++S +  ++E     I+ +        + +E  +               K N    
Sbjct: 178 EEGGVSSNDFSALETLCKKIMKEKQAFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 237

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  + I   SS
Sbjct: 238 TV---YRCGPLID--LCRGPHVRHTGKIKTIKIHKNSS 270


>gi|56478217|ref|YP_159806.1| dihydroorotate dehydrogenase 2 [Aromatoleum aromaticum EbN1]
 gi|73913669|sp|Q5P1A9|PYRD_AZOSE RecName: Full=Dihydroorotate dehydrogenase; AltName:
           Full=DHOdehase; Short=DHOD; Short=DHODase; AltName:
           Full=Dihydroorotate oxidase
 gi|56314260|emb|CAI08905.1| Dihydroorotate dehydrogenase [Aromatoleum aromaticum EbN1]
          Length = 350

 Score = 42.8 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            RA    +   +K+ +LAS++ V+  +   + + ++  E    +L     +L+   + L+
Sbjct: 146 DRAADDYLACLDKVYALASYVTVNISSPNTKNLRQLQGES---ELDDLLGRLKARQQQLA 202

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA----------- 836
                 V     I  +++  ++ ++ DAL++    G+I         K            
Sbjct: 203 DRHGRYVPLTLKIAPDLEPAQVTNIADALRRHRIDGVIATNTTIARDKVQGVRYAEQQGG 262

Query: 837 ---SVLIVVTEDLLDRFN---AVDLARLSAKVLGGGGGGGRPHMAQSG 878
              + +   +  ++ + +   A +L  ++A  +  G G  R  +A +G
Sbjct: 263 LSGAPVFEASTAVVAQLSRALAGELPIIAAGGILDGRGA-RAKLA-AG 308


>gi|89098678|ref|ZP_01171560.1| hypothetical protein B14911_00775 [Bacillus sp. NRRL B-14911]
 gi|89086640|gb|EAR65759.1| hypothetical protein B14911_00775 [Bacillus sp. NRRL B-14911]
          Length = 515

 Score = 42.8 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 729 QRARSHLMGQDEKLK--SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           + A   L  + EK K       ++ +   +  +++   E  ++L+  +   +LQ   E  
Sbjct: 177 ESAEKQLNEKAEKEKNPETRKLIEETADEI-SKLDSSAEALKELEKKNKSLELQKMKEQE 235

Query: 787 SCHKIADVN------FMSHIISEVDSKELKSVMDALQKKIQS 822
              K+ +         +S + + +D+K+L   MD L++  ++
Sbjct: 236 RQRKLEETKSRLDNAGLSSLAAALDNKDLNKAMDELKELQKN 277


>gi|123449736|ref|XP_001313584.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
 gi|121895473|gb|EAY00655.1| threonyl-tRNA synthetase family protein [Trichomonas vaginalis G3]
          Length = 709

 Score = 42.8 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 69/193 (35%), Gaps = 12/193 (6%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +    ++        R +    HS+ H+L  A+ T L   V          G  +D   
Sbjct: 98  PITHGDNITFVNFDDPRGKEVFWHSSAHVLGAAIETHL--QVEIAIGPAGEKGFFYDYEP 155

Query: 624 SK--PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVS 680
            +   +T   LK IE     I    +    ++  RE+A+   ++    T+   +RV    
Sbjct: 156 REGQEVTPETLKEIEKAAISICNHKVDYERKMCTREEALEIFSSNHYKTEILTNRVAPGE 215

Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI------RAGIRRIEAITGQRARSH 734
           +           LC G H+ +   I   +++  S+          +RRI AIT  + +  
Sbjct: 216 LVSLYRTGTFIDLCRGPHLINAAPIASWWVMDVSACIWNGDANKKMRRIRAITFPK-KEQ 274

Query: 735 LMGQDEKLKSLAS 747
           +    + L+  A 
Sbjct: 275 MTEHKKFLEEAAK 287


>gi|126277226|ref|XP_001373323.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 806

 Score = 42.8 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 36/263 (13%)

Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518
           G + +     + E  K              S ++K ++  G+IVE    G+        T
Sbjct: 133 GPNFIEDRLMLYETLKREHDTLLAYRAANESKLIKIMLIDGKIVE----GESW----KTT 184

Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578
           P+   AG   G     + D   +      K  + ++          L  + +L L     
Sbjct: 185 PYQVAAGISQG-----LADNTVIA-----KVNDELW-----DLDRPLEEDSTLELLRFDN 229

Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIED 637
              Q    HS+ H+L  A+ +  G  +         +G  FD     + ++S E  ++E+
Sbjct: 230 EEAQAVYWHSSAHILGEAMESYYGGCLCYGPPI--ENGFYFDMFIEDRGVSSTEFPTLEN 287

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSA 692
               I+ +        + +E  +               K +     V   Y  G +    
Sbjct: 288 MCKTIMKEKQRFERLEIKKEILLEMFKYNKFKCRILNEKVDTPTTTV---YRCGPLID-- 342

Query: 693 LCGGTHVSSTGEIMLLYIVSESS 715
           LC G HV  TG+I  + I   SS
Sbjct: 343 LCRGPHVRHTGKIKAIKIFKNSS 365


>gi|167585938|ref|ZP_02378326.1| Threonyl/alanyl tRNA synthetase, SAD [Burkholderia ubonensis Bu]
          Length = 79

 Score = 42.8 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDGIRLQIT 544
               +IV A+ + G             +  D+T FY   GGQ GD G   + DG  + I 
Sbjct: 14  TRCDAIVTAVGEDG-------------IQLDRTVFYPLGGGQAGDCGMLTLPDGASIAIA 60

Query: 545 DVQK 548
           D +K
Sbjct: 61  DTRK 64


>gi|19113156|ref|NP_596364.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|3183175|sp|P87144|SYTC_SCHPO RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|2104451|emb|CAB08788.1| cytoplasmic threonine-tRNA ligase Trs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 703

 Score = 42.4 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 9/134 (6%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HS+ H+L  A       H+               + + + IT+ +  SIE      I Q 
Sbjct: 121 HSSAHILGEATELSFHCHLCIGPPTDEGFFYEMGIDNGRVITNDDYSSIESYAKQAIKQK 180

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGTHVSS 701
            P    ++++E  +          KY   +    +                LC G HV  
Sbjct: 181 QPFERLVISKEGLLEMFRYN----KYKQYIIQTKIPDGASTTVYRCGPLIDLCTGPHVPH 236

Query: 702 TGEIMLLYIVSESS 715
           TG I    +   SS
Sbjct: 237 TGRIKSFAVTKNSS 250


>gi|224078460|ref|XP_002305544.1| predicted protein [Populus trichocarpa]
 gi|222848508|gb|EEE86055.1| predicted protein [Populus trichocarpa]
          Length = 209

 Score = 42.4 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCA------IGDGIRLQITDVQKK 549
           +VEV+ ++TPFYAE+GGQLGD                ++I DVQ+ 
Sbjct: 50  EVEVLLNKTPFYAESGGQLGDREFLYVTADQSKQTAVVEIKDVQEY 95


>gi|301757430|ref|XP_002914565.1| PREDICTED: myosin-9-like [Ailuropoda melanoleuca]
 gi|281351115|gb|EFB26699.1| hypothetical protein PANDA_002468 [Ailuropoda melanoleuca]
          Length = 1961

 Score = 42.4 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEASQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + + ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLED-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|194226776|ref|XP_001500252.2| PREDICTED: myosin, heavy chain 9, non-muscle [Equus caballus]
          Length = 1862

 Score = 42.4 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
             L    ++ K     +            +LA     +L G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEVKALLQGKG 1241


>gi|115685727|ref|XP_001182925.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115727308|ref|XP_001194124.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 29

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 270 VNHRVIVDHLRSSSFLIADGILPANEGRG 298
           + +RV+ DH+R+ +  + DG  P N GRG
Sbjct: 1   MAYRVVADHIRTLTIALLDGSWPDNVGRG 29


>gi|296139304|ref|YP_003646547.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM
           20162]
 gi|296027438|gb|ADG78208.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM
           20162]
          Length = 1194

 Score = 42.4 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 8/171 (4%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E    Q   + L   +  L         +      RVEE+    R  +   A    ++  
Sbjct: 430 EFEQVQGQIAELDANEAGLDEHHERSSAALVAAQARVEELQAAERAAEQKVASLMARIEA 489

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
             L+  +     ++   I  V +   + +   ++   +  +   +G   E  A+  + V 
Sbjct: 490 LTLNLDRGDGAAWVVEHIDGVTAAVAERL--QIRAGYEKAVAAALGPVAEAVAAPSVSVA 547

Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
              L R    D  R +A V+ G  G   P     GG   + A  A+  V +
Sbjct: 548 SAALARLREADGGR-AALVVEGLSGPSAP-----GGSLPDGAVWAVDAVTA 592


>gi|303271627|ref|XP_003055175.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463149|gb|EEH60427.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 202

 Score = 42.4 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837
           ++Q +  D+   + A +  M+ +    D +E K     + K I S          EKK +
Sbjct: 53  RMQNSAGDIILLEAA-MEGMNAVPDPEDPEERKGCSGHISKLIISE------NEPEKKIA 105

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873
           ++  VTE+  ++ NA++  +   +   GGG GG P 
Sbjct: 106 MVAYVTEEHKEKINAIEWMKSVCETDLGGGVGGTPD 141


>gi|1464742|gb|AAB04939.1| threonyl-tRNA synthetase [Homo sapiens]
          Length = 712

 Score = 42.4 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++   +  + G  +         +G  +D+  
Sbjct: 120 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEGMERVYGGCLCYGPPI--ENGFYYDMYL 177

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     II +        + +E  +A              K N    
Sbjct: 178 EEGGVSSNDFSSLEALCKKIIKEKQAFERLEVKKETLLAMFKYNKFKCRILNEKVNTPTT 237

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 238 TV---YRCGPLID--LCRGPHVRHTGKIKALKIHKNSS 270


>gi|323337178|gb|EGA78432.1| Ths1p [Saccharomyces cerevisiae Vin13]
          Length = 734

 Score = 42.4 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----------THSKPITSAELKSI 635
           HS+ H+L  +    LG+H+       T DG  +++           +  + ++ A+   +
Sbjct: 151 HSSAHVLGESCECHLGAHICLGPP--TDDGFFYEMAVRDSMKDISESPERTVSQADFPGL 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E    ++I Q       +M++ED +     +        +  +V  +  DGG  +   CG
Sbjct: 209 EGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKY------KTYLVQTKVPDGGATTVYRCG 262

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G H+  TG I    ++  SS
Sbjct: 263 KLIDLCVGPHIPHTGRIKAFKLLKNSS 289


>gi|47155081|emb|CAG27299.1| putative alanyl tRNA synthetase [Candida metapsilosis]
          Length = 140

 Score = 42.0 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 737 GQDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
            ++ K+K L   LK      + +  +  +  ++ +  +  Q    K + +  ++ +    
Sbjct: 16  AKESKVKELGVALKKLSISVLDKQKLTEKFNKVDKSIKDHQKSIQKEESKKTLDXVKKWL 75

Query: 791 IADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             D      ++H+    ++K +    + ++K+ ++  + L+    +K A    V  E + 
Sbjct: 76  DXDNKSEFLVAHVPINANAKAITEAFNLVKKQDKTKSLYLLTGQNDKVAHGCYVSDEAIA 135

Query: 848 DRFNA 852
              +A
Sbjct: 136 KGVDA 140


>gi|156086662|ref|XP_001610740.1| threonyl-tRNA synthetase [Babesia bovis T2Bo]
 gi|154797993|gb|EDO07172.1| threonyl-tRNA synthetase, putative [Babesia bovis]
          Length = 736

 Score = 42.0 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 12/150 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VT 622
            L  + ++        + Q    HS+ HLL  AL T+ G++++   +     G  +D   
Sbjct: 132 PLECDCTVRFHTFESPKGQHVFWHSSAHLLGSALETLYGAYITIGPAL--SQGFYYDCYL 189

Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVR 677
            +      ++  I + V+ +     P    + ++E+A+           L+  K  D   
Sbjct: 190 GNNTFKPDDMALITEQVSTVTKTKSPFQRLVCSKEEALELMKHNPFKVELIRKKVPDGSS 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIML 707
            V     D       LC G H+  T  +  
Sbjct: 250 TVCYRCGD----FVDLCRGPHLPFTTSVHH 275


>gi|207344345|gb|EDZ71519.1| YIL078Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 689

 Score = 42.0 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----------THSKPITSAELKSI 635
           HS+ H+L  +    LG+H+       T DG  +++           +  + ++ A+   +
Sbjct: 106 HSSAHVLGESCECHLGAHICLGPP--TDDGFFYEMAVRDSMKDISESPERTVSQADFPGL 163

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E    ++I Q       +M++ED +     +        +  +V  +  DGG  +   CG
Sbjct: 164 EGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKY------KTYLVQTKVPDGGATTVYRCG 217

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G H+  TG I    ++  SS
Sbjct: 218 KLIDLCVGPHIPHTGRIKAFKLLKNSS 244


>gi|256273733|gb|EEU08659.1| Ths1p [Saccharomyces cerevisiae JAY291]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----------THSKPITSAELKSI 635
           HS+ H+L  +    LG+H+       T DG  +++           +  + ++ A+   +
Sbjct: 151 HSSAHVLGESCECHLGAHICLGPP--TDDGFFYEMAVRDSMKDISESPERTVSQADFPGL 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E    ++I Q       +M++ED +     +        +  +V  +  DGG  +   CG
Sbjct: 209 EGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKY------KTYLVQTKVPDGGATTVYRCG 262

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G H+  TG I    ++  SS
Sbjct: 263 KLIDLCVGPHIPHTGRIKAFKLLKNSS 289


>gi|297708729|ref|XP_002831109.1| PREDICTED: LOW QUALITY PROTEIN: myosin-9-like [Pongo abelii]
          Length = 1960

 Score = 42.0 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|190406293|gb|EDV09560.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a]
 gi|259147177|emb|CAY80430.1| Ths1p [Saccharomyces cerevisiae EC1118]
 gi|323333154|gb|EGA74554.1| Ths1p [Saccharomyces cerevisiae AWRI796]
 gi|323354584|gb|EGA86420.1| Ths1p [Saccharomyces cerevisiae VL3]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----------THSKPITSAELKSI 635
           HS+ H+L  +    LG+H+       T DG  +++           +  + ++ A+   +
Sbjct: 151 HSSAHVLGESCECHLGAHICLGPP--TDDGFFYEMAVRDSMKDISESPERTVSQADFPGL 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E    ++I Q       +M++ED +     +        +  +V  +  DGG  +   CG
Sbjct: 209 EGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKY------KTYLVQTKVPDGGATTVYRCG 262

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G H+  TG I    ++  SS
Sbjct: 263 KLIDLCVGPHIPHTGRIKAFKLLKNSS 289


>gi|255947314|ref|XP_002564424.1| Pc22g03830 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591441|emb|CAP97671.1| Pc22g03830 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 741

 Score = 42.0 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +S      TP G  +D+     + +  A+ K+++   +    
Sbjct: 153 HSSAHVLGLASECEYGCLLSHGPP--TPQGFFYDMAMPDGRVVREADWKALDIRASRSFK 210

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704
           +        +++E+     A +     Y D++                LC G H+ +TG+
Sbjct: 211 EKQSFDRLEVSKENLKKMFAYSKYKLHYIDKLVTGESSTVYRNGTLVDLCRGPHIQNTGK 270

Query: 705 IMLLYIVSESS 715
           I    I+  SS
Sbjct: 271 IKAFKIMQNSS 281


>gi|14318437|ref|NP_116578.1| Ths1p [Saccharomyces cerevisiae S288c]
 gi|730881|sp|P04801|SYTC_YEAST RecName: Full=Threonyl-tRNA synthetase, cytoplasmic; AltName:
           Full=Threonine--tRNA ligase; Short=ThrRS
 gi|556869|emb|CAA86092.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae]
 gi|285812573|tpg|DAA08472.1| TPA: Ths1p [Saccharomyces cerevisiae S288c]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----------THSKPITSAELKSI 635
           HS+ H+L  +    LG+H+       T DG  +++           +  + ++ A+   +
Sbjct: 151 HSSAHVLGESCECHLGAHICLGPP--TDDGFFYEMAVRDSMKDISESPERTVSQADFPGL 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E    ++I Q       +M++ED +     +        +  +V  +  DGG  +   CG
Sbjct: 209 EGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKY------KTYLVQTKVPDGGATTVYRCG 262

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G H+  TG I    ++  SS
Sbjct: 263 KLIDLCVGPHIPHTGRIKAFKLLKNSS 289


>gi|297260956|ref|XP_001083662.2| PREDICTED: myosin-9-like [Macaca mulatta]
          Length = 1879

 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1000 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1059

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 1060 LEALKTELEDTLDTTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 1118

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1119 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLLQGKG 1160


>gi|296191774|ref|XP_002743773.1| PREDICTED: myosin-9 [Callithrix jacchus]
          Length = 1960

 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|12667788|ref|NP_002464.1| myosin-9 [Homo sapiens]
 gi|6166599|sp|P35579|MYH9_HUMAN RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|3169000|emb|CAB05105.1| myosin, heavy chain 9, non-muscle [Homo sapiens]
 gi|47678583|emb|CAG30412.1| MYH9 [Homo sapiens]
 gi|53791227|dbj|BAD52439.1| non-muscle myosin heavy polypeptide 9 [Homo sapiens]
 gi|109451392|emb|CAK54557.1| MYH9 [synthetic construct]
 gi|109451988|emb|CAK54856.1| MYH9 [synthetic construct]
 gi|119580500|gb|EAW60096.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens]
 gi|119580502|gb|EAW60098.1| myosin, heavy polypeptide 9, non-muscle, isoform CRA_a [Homo sapiens]
 gi|152012654|gb|AAI50170.1| Myosin, heavy chain 9, non-muscle [synthetic construct]
 gi|152012993|gb|AAI50171.1| Myosin, heavy chain 9, non-muscle [synthetic construct]
 gi|166788562|dbj|BAG06729.1| MYH9 variant protein [Homo sapiens]
 gi|168270842|dbj|BAG10214.1| myosin-9 [synthetic construct]
          Length = 1960

 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLLQGKG 1241


>gi|4619|emb|CAA26666.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----------THSKPITSAELKSI 635
           HS+ H+L  +    LG+H+       T DG  +++           +  + ++ A+   +
Sbjct: 151 HSSAHVLGESCECHLGAHICLGPP--TDDGFFYEMAVRDSMKDISESPERTVSQADFPGL 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E    ++I Q       +M++ED +     +        +  +V  +  DGG  +   CG
Sbjct: 209 EGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKY------KTYLVQTKVPDGGATTVYRCG 262

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G H+  TG I    ++  SS
Sbjct: 263 KLIDLCVGPHIPHTGRIKAFKLLKNSS 289


>gi|151943085|gb|EDN61420.1| threonyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]
          Length = 734

 Score = 42.0 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 26/147 (17%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV-----------THSKPITSAELKSI 635
           HS+ H+L  +    LG+H+       T DG  +++           +  + ++ A+   +
Sbjct: 151 HSSAHVLGESCECHLGAHICLGPP--TDDGFFYEMAVRDSMKDISESPERTVSQADFPGL 208

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           E    ++I Q       +M++ED +     +        +  +V  +  DGG  +   CG
Sbjct: 209 EGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKY------KTYLVQTKVPDGGATTVYRCG 262

Query: 696 -------GTHVSSTGEIMLLYIVSESS 715
                  G H+  TG I    ++  SS
Sbjct: 263 KLIDLCVGPHIPHTGRIKAFKLLKNSS 289


>gi|221130006|ref|XP_002168244.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 900

 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 42/248 (16%)

Query: 578 QNRRQLSINHSATHLLHHALST--ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           + R     N S  + L H      + G ++S++ +    DGL             E K +
Sbjct: 80  KKRLNQYQNISNINELLHVFYKDIVNGFYISKHNALFIIDGL------------DEFKYL 127

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG--------TKYNDRVRVVSVEYEDGG 687
            + +N   + N P+V  +   ++     A  +          T+++D++ V  + +   G
Sbjct: 128 NELINQSSSCNYPIVNALTEIQNYKHVVAGRVYAMDKYQYIYTEHSDKLTVQIMGFNKNG 187

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE--------AIT-----GQRARSH 734
           +++      THV    + ++  I+ ES I    + +          +T     G      
Sbjct: 188 INNYVE---THVREEKKDVVKAILKESPIAKLNKDLTDCGDEFGLFVTILQQDGWCELDW 244

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           +    +KL      LK     +   VE I E+Y K+ +   + K      D +  K   +
Sbjct: 245 I----DKLNEDNKILKTEVSELKKAVEFISEKYDKIIIEQEELKADCEKPDRNLEKSLTI 300

Query: 795 NFMSHIIS 802
           N    +  
Sbjct: 301 NLRDKLAE 308


>gi|194758924|ref|XP_001961706.1| GF14797 [Drosophila ananassae]
 gi|190615403|gb|EDV30927.1| GF14797 [Drosophila ananassae]
          Length = 339

 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 86/267 (32%), Gaps = 22/267 (8%)

Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY-------------QNRRQL 583
           DG +  + + Q ++        ++ +  L T      T+               Q R ++
Sbjct: 2   DGEKNAVIECQCESYPDMHLKGMLPKPELWTTDVQRKTVSSMKVFTTIMLHAWRQRREEV 61

Query: 584 SINHSATHLLH-HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642
                    LH  ++ T    HV      +       ++      ++ ++  +  +   +
Sbjct: 62  RHLQKVVQTLHTRSMKTRNKLHVCDTLIRVEQKR-NSELQLQLKQSTLDINQVRTSCESL 120

Query: 643 IAQNLPVVTRIMNRED--AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700
            +    +    M  +          A L    N   R +             LC    V+
Sbjct: 121 ASTVHDLTADKMQLQTNLHQREKEYAELEEISNQTKRELFGSLMQQRNLQHELCDRQRVA 180

Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
              +     ++SE  I  G    EA T ++A+     +  +   L   +     ++V +V
Sbjct: 181 QKLQSENEQLISEVVIMEGK---EAKT-KKAQEWYQREMARKDELIRTMNGEIASLVEKV 236

Query: 761 EEIWEEYRKLQLIHA-KRKLQLNVEDL 786
             + ++ R+L+ +   K K+   V +L
Sbjct: 237 RTLADQNRELEKLREGKEKIDALVSEL 263


>gi|150004391|ref|YP_001299135.1| hypothetical protein BVU_1838 [Bacteroides vulgatus ATCC 8482]
 gi|254883328|ref|ZP_05256038.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294776782|ref|ZP_06742245.1| putative lipoprotein [Bacteroides vulgatus PC510]
 gi|319643364|ref|ZP_07997990.1| hypothetical protein HMPREF9011_03591 [Bacteroides sp. 3_1_40A]
 gi|149932815|gb|ABR39513.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836121|gb|EET16430.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294449258|gb|EFG17795.1| putative lipoprotein [Bacteroides vulgatus PC510]
 gi|317384993|gb|EFV65946.1| hypothetical protein HMPREF9011_03591 [Bacteroides sp. 3_1_40A]
          Length = 282

 Score = 42.0 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
             L    E++  L   LK SQ     +   V  + +E    Q      + +L  +++   
Sbjct: 93  EKLQSNREQIAKLEKQLKNSQYNSAQLKKAVANLTKELEAKQQQIETLQAELASKNIRIA 152

Query: 790 KIAD-VNFMSHIISEVDSKELKSVMDAL-QKKIQSGIIMLVGISKEKK 835
           ++ D V  +S  +SE+ ++          Q K  +    + G   E K
Sbjct: 153 ELDDAVAGLSQNVSELTAENEAKAATVASQDKALNAAWFVFGTKSELK 200


>gi|302656156|ref|XP_003019834.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
 gi|291183606|gb|EFE39210.1| hypothetical protein TRV_06122 [Trichophyton verrucosum HKI 0517]
          Length = 764

 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      T  G  +D+   +   +T A+  S++     I  
Sbjct: 158 HSSAHALGEACECQYGCLLSHGPP--TAQGFFYDMAIPEGGVVTQADYPSLDAKTAKIFK 215

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++E+       +     Y D      +E E   V+       LC G H+ 
Sbjct: 216 EKQSFDRLEVSKENLKKMFGYSKYKLHYIDN----LIEGESSTVYRCGTLVDLCRGPHIQ 271

Query: 701 STGEIMLLYIVSESS 715
           +TG+I  + I   SS
Sbjct: 272 NTGKIKAMKITQNSS 286


>gi|302497531|ref|XP_003010766.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
 gi|291174309|gb|EFE30126.1| hypothetical protein ARB_03468 [Arthroderma benhamiae CBS 112371]
          Length = 764

 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      T  G  +D+   +   +T A+  S++     I  
Sbjct: 158 HSSAHALGEACECQYGCLLSHGPP--TAQGFFYDMAIPEGGVVTQADYPSLDAKTAKIFK 215

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++E+       +     Y D      +E E   V+       LC G H+ 
Sbjct: 216 EKQSFDRLEVSKENLKKMFGYSKYKLHYIDN----LIEGESSTVYRCGTLVDLCRGPHIQ 271

Query: 701 STGEIMLLYIVSESS 715
           +TG+I  + I   SS
Sbjct: 272 NTGKIKAMKITQNSS 286


>gi|182414055|ref|YP_001819121.1| phosphoribulokinase/uridine kinase [Opitutus terrae PB90-1]
 gi|177841269|gb|ACB75521.1| phosphoribulokinase/uridine kinase [Opitutus terrae PB90-1]
          Length = 567

 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%)

Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647
           S T+LL +A S +           +   G   ++    P+TSAEL ++E ++  I+ +NL
Sbjct: 85  SLTYLLDYAFSRLYPEATLLIDHSLASGGYFCNIRGRAPLTSAELAALEADMRRIVGENL 144

Query: 648 PVVTRIMNREDAIASGAAALLGTK 671
           P     +   +AIA         K
Sbjct: 145 PFNRHEVTLAEAIAHFDRQKQADK 168


>gi|146420108|ref|XP_001486012.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146389427|gb|EDK37585.1| hypothetical protein PGUG_01683 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 719

 Score = 42.0 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 12/136 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS---KPITSAELKSIEDNVNDII 643
           HS+ H+L  +    LG  +       T DG  +DV+     + IT  +  ++E      I
Sbjct: 144 HSSAHVLGESCECHLGGLICYGPP--TEDGFFYDVSFDNGERVITQGDFGNLEKVSTKAI 201

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
            +    V   M +E  +          K+   +     +     V+       LC G H+
Sbjct: 202 KEKQKFVRLEMTKEQLLEMFKYNKYKVKF---ISDKIPDGTSSTVYRCGPLIDLCLGPHI 258

Query: 700 SSTGEIMLLYIVSESS 715
             TG+I    ++  SS
Sbjct: 259 PHTGKIKSFKLLKNSS 274


>gi|307196554|gb|EFN78084.1| Ankyrin-2 [Harpegnathos saltator]
          Length = 5738

 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 742  LKSLASFLKVSQGNVVGRVEEIWEEYRK---LQLIHAKRKLQLNVEDLSCHKIADVNFMS 798
            L  +    K S   V   V+E  +E +K   ++   AK+K    ++DL   K A V+ + 
Sbjct: 3185 LSGIFKSAKHSAEEVSDDVKEFLDETKKEAAMEEERAKKKATAGLKDLKDKKDAVVSGVQ 3244

Query: 799  HIISE--VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDL 855
                +  ++ K+ K    +  K  +  I+  +    +K A       E    +   A + 
Sbjct: 3245 ETADKAAIEMKDAKDKTVSAMKDKKDKIVEEISKDAQKVADTTKATGEKIATETKKAGEK 3304

Query: 856  ARLSAKVLGGG 866
               +A  +  G
Sbjct: 3305 IGSAAAGVVQG 3315


>gi|322367864|ref|ZP_08042434.1| Patched family protein [Haladaptatus paucihalophilus DX253]
 gi|320552571|gb|EFW94215.1| Patched family protein [Haladaptatus paucihalophilus DX253]
          Length = 1255

 Score = 42.0 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           ++ L  Q E+L+  A  L+  +  +  R  E+ +E ++LQ   A  +LQ + ++L   + 
Sbjct: 385 KAELEQQSEQLQESAGQLQAERAELEQRSAELQQEGKELQ--QAFSELQQDKKELQEKQA 442

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQK 818
           A          E DS++LK     L++
Sbjct: 443 A---------LEADSQQLKERGAQLKE 460


>gi|212693713|ref|ZP_03301841.1| hypothetical protein BACDOR_03233 [Bacteroides dorei DSM 17855]
 gi|237709235|ref|ZP_04539716.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724464|ref|ZP_04554945.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265754912|ref|ZP_06089826.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663734|gb|EEB24308.1| hypothetical protein BACDOR_03233 [Bacteroides dorei DSM 17855]
 gi|229437023|gb|EEO47100.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456620|gb|EEO62341.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234523|gb|EEZ20102.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 282

 Score = 42.0 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQ---GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
             L    E++  L   LK SQ     +   V  + +E    Q      + +L  +++   
Sbjct: 93  EKLQSNREQIAKLEKQLKNSQYNSAQLKKAVANLTKELEAKQQQIETLQAELASKNIRIA 152

Query: 790 KIAD-VNFMSHIISEVDSKELKSVMDAL-QKKIQSGIIMLVGISKEKK 835
           ++ D V  +S  +SE+ ++          Q K  +    + G   E K
Sbjct: 153 ELDDAVAGLSQNVSELTAENEAKAATVASQDKALNAAWFVFGTKSELK 200


>gi|156082291|ref|XP_001608631.1| variant erythrocyte surface antigen-1 [Babesia bovis T2Bo]
 gi|154795878|gb|EDO05063.1| variant erythrocyte surface antigen-1, putative [Babesia bovis]
          Length = 1335

 Score = 41.6 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 37/202 (18%)

Query: 722 RIEAITGQ--RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH----A 775
           R+E + G+  +       ++E  +++A  LK    N+   V ++      L+        
Sbjct: 673 RVEKVNGELGKVLPQGKSEEEDDEAIAKTLKTLLENIGEVVVQLGNAQEALERRKGIDGV 732

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQK---KIQSGIIMLVGIS 831
           KR L    + L   K  D   +   +  + + K  + V D L+    K++  +  L    
Sbjct: 733 KRALDRAKDGLQRAKENDGENVGTRLYGILEEKVDEGVEDKLKDNLTKVKDALNALTTNG 792

Query: 832 KEKKASVLI--------VVTEDLLDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNG 882
              K   ++           +++    + V ++ R   K L             + G N 
Sbjct: 793 GNGKLKDVVDKLGNDPSSAKDNISAAIHNVLEVLRALMKGLE------------AAGKNE 840

Query: 883 N---KA---DQAIAGVASFLKK 898
               K     +A+    S LK+
Sbjct: 841 EAKKKLGNHQEALLNATSKLKE 862


>gi|293568650|ref|ZP_06679965.1| hypothetical protein EfmE1071_1426 [Enterococcus faecium E1071]
 gi|291588610|gb|EFF20443.1| hypothetical protein EfmE1071_1426 [Enterococcus faecium E1071]
          Length = 259

 Score = 41.6 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 739 DEKLKSLASFLKV----------SQGNVVGRVEEIWEEYR----KLQLIHAKRKLQLNVE 784
           +E + +L+  L             +  +      I EE +    +L+   +K K+Q  V 
Sbjct: 77  EETVSNLSHKLSSIKLSADDYDIKESELPKEAAAIQEEKKAVLTQLEDAESKLKIQTAVN 136

Query: 785 DLSCHKIADVN------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           DL    +++         +   ++  D   ++  M   +      ++M
Sbjct: 137 DLFTKNVSNWQQAVDDVIIKEKVTSADVARVRENMSFFKDSPWKTVVM 184


>gi|147899539|ref|NP_001087812.1| threonyl-tRNA synthetase [Xenopus laevis]
 gi|51895835|gb|AAH81263.1| MGC86352 protein [Xenopus laevis]
          Length = 721

 Score = 41.6 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H++  A+  + G  +         +G  +D       ++S +  S+E+    I+
Sbjct: 151 YWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLDDGGVSSNDFTSLENLCKKIM 208

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        +++E  +               K +     V   Y  G +    LC G H
Sbjct: 209 KEKQQFERLEVSKETLLEMFKYNKFKCRILNEKVDTPTTTV---YRCGPLID--LCRGPH 263

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L +   SS
Sbjct: 264 VRHTGKIKALKVHKNSS 280


>gi|288818203|ref|YP_003432551.1| phage tail tape measure protein [Hydrogenobacter thermophilus TK-6]
 gi|288787603|dbj|BAI69350.1| phage tail tape measure protein [Hydrogenobacter thermophilus TK-6]
 gi|308751804|gb|ADO45287.1| hypothetical protein Hydth_0891 [Hydrogenobacter thermophilus TK-6]
          Length = 883

 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 71/185 (38%), Gaps = 26/185 (14%)

Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH---VSSTGEIMLLYI--------VS 712
           A AL+G    + +R    E   G      +   TH   V +T  + +  I        +S
Sbjct: 389 ATALVGWNLGEMLREWLDEQTKGAFTKWLITIETHIVGVINTIRVWIGKIPLLGRLFGIS 448

Query: 713 ESSIR---AGIRRIEAITGQRARSHLMGQDEKLKSLASF-----------LKVSQGNVVG 758
           E  ++     + R+ ++  + A+ +   Q +  + +               K     ++ 
Sbjct: 449 EEELQESLKNMERMRSMAEEDAKKYKETQQKAAEEITQAGQITAQAIRQVSKQQAEEILK 508

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQ 817
            +++  +   KLQ I    K  ++++D+      +    S  +   +D+ +++  +D L+
Sbjct: 509 SLKDQEQTIAKLQEIKQNLKDSISLQDIMNALQDETKAFSQKLELSLDTSDVEDRIDTLK 568

Query: 818 KKIQS 822
            K++ 
Sbjct: 569 GKLRE 573


>gi|241888868|ref|ZP_04776174.1| putative extracellular matrix-binding protein ebh [Gemella
            haemolysans ATCC 10379]
 gi|241864544|gb|EER68920.1| putative extracellular matrix-binding protein ebh [Gemella
            haemolysans ATCC 10379]
          Length = 1673

 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 735  LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
            L    + L       K    + +   E  +EE +  QL  AK +    +   +     +V
Sbjct: 896  LKADADLLTKADETGKTP--DSIAAYERKYEELKA-QLEAAKTEAAAVLAKGNNATKEEV 952

Query: 795  NFMSHIISEV-----DSKEL--KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                  +  V     ++K L  ++     + K++S    LV +    K +  I   E   
Sbjct: 953  KAAQAKVDAVKTELENAKNLLVEAATTEEKNKLKSDADSLVKVDTTGKTADSIKAYESEF 1012

Query: 848  DRFNA-VDLAR-LSAKVLGGGGGGGRPHM--AQSGGPNGNKADQAIAGVASFLK 897
            ++  A ++ A+  +A VL  G    +  +  AQ+     + A  A+   A  LK
Sbjct: 1013 EKLKAQLEAAKTEAAAVLAKGNNATKAEVQAAQA---KVDAAKTALDKAAESLK 1063


>gi|47575750|ref|NP_001001219.1| threonyl-tRNA synthetase [Xenopus (Silurana) tropicalis]
 gi|301626626|ref|XP_002942489.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Xenopus
           (Silurana) tropicalis]
 gi|45709710|gb|AAH67949.1| threonyl-tRNA synthetase-like 2 [Xenopus (Silurana) tropicalis]
          Length = 721

 Score = 41.6 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H++  A+  + G  +         +G  +D       ++S +  S+E+    I+
Sbjct: 151 YWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLEDGGVSSNDFTSLENLCKKIM 208

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        + +E  +               K +     V   Y  G +    LC G H
Sbjct: 209 KEKQQFERLEVTKETLLEMFKYNKFKCRILNEKVDTPTTTV---YRCGPLID--LCRGPH 263

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L +   SS
Sbjct: 264 VRHTGKIKALKVHKNSS 280


>gi|224062355|ref|XP_002195014.1| PREDICTED: similar to probable threonyl-tRNA synthetase 2,
           cytoplasmic [Taeniopygia guttata]
          Length = 719

 Score = 41.6 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G  +         +G  +D     + ++S E   +E+   +II
Sbjct: 149 YWHSSAHILGEAMEGYFGGCLCYGPPI--ENGFHYDMYIEDRSVSSTEFPLLENRCKNII 206

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        + +E  +               K       V   Y  G +    LC G H
Sbjct: 207 KEKQAFERLEVKKEILLDMFKYNKFKCRILNEKVKTPTTTV---YRCGPLID--LCKGPH 261

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I+  SS
Sbjct: 262 VRHTGKIKALKIIKSSS 278


>gi|281205439|gb|EFA79630.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 880

 Score = 41.6 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 15/135 (11%)

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-FMS 798
           + L    + ++V   +    ++++  E RKLQL   K  L+   +D S H++ DV   ++
Sbjct: 392 DLLDEACANIRVQLNSQPEAIDQL--ERRKLQLEVEKTALEKEEDDQSKHRLEDVKEELA 449

Query: 799 HIISEVDS-----KELKSVMD---ALQKKIQSGIIMLVGISKEKKASVLI----VVTEDL 846
            I  E+       ++ +S +D    L+KK++   + L    +     ++      V  DL
Sbjct: 450 KIQDELTPLQAIYQKERSRVDKIRDLRKKLEDVKVKLADAERRYDLQLVADLKYYVIPDL 509

Query: 847 LDRFNAVDLARLSAK 861
             +    ++ R  AK
Sbjct: 510 EKQIENCNIERKDAK 524


>gi|119472948|ref|XP_001258450.1| filament-forming protein (Tpr/p270), putative [Neosartorya fischeri
            NRRL 181]
 gi|119406602|gb|EAW16553.1| filament-forming protein (Tpr/p270), putative [Neosartorya fischeri
            NRRL 181]
          Length = 2023

 Score = 41.6 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 126/413 (30%), Gaps = 74/413 (17%)

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            ++++    A+ L  +   +    LE   SRA+A +        E+ W  LKE+Y +    
Sbjct: 1116 ELLKHAEAAKNLQAVRAEANQLKLELLESRAQADTYKKDLAQKEESWSELKERYES---- 1171

Query: 459  GYDLLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                   ++  K   +VL Q   +     G+SS + A+ +    + E+   +        
Sbjct: 1172 -----ELAELQKRREEVLHQNNLLHTQLEGISSQIAALQKDRANIPESEQDEGTT----- 1221

Query: 518  TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE--------M 569
                              G    ++    +K+   +  H +  E   LR +         
Sbjct: 1222 -------------APNLEGLQEVIKFLRREKEIVDVQYHLSTQEAKRLRQQLDYTQSQLD 1268

Query: 570  SLVLTIDYQNRRQLSINHSATHL--LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627
               L ++ Q R      H+A     L   L+ +     S              +      
Sbjct: 1269 EARLKLEQQRRAAADSEHTALSHNKLMETLNELNLFRESSVTLRNQVKQAETALAEKSTR 1328

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAAL---LGTKYNDRVRVVSVE 682
                L+ IE     I      V T+   M    A           +  KY DRV    +E
Sbjct: 1329 VDELLQQIEPLETRIRELENVVETKDGEMKLLQADRDRWQQRTQNILQKY-DRVDPAEME 1387

Query: 683  YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE----AITGQRARSHLMGQ 738
                 + S                      + +I A   R      A T      H   +
Sbjct: 1388 GLKEKLASLEK-----------------ERDEAISA---RDTLQAQAATFPEQLKHAEDR 1427

Query: 739  DEKLK-SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
             ++L+  L    K     + GR+       ++L+L    ++ ++  E+L+  K
Sbjct: 1428 TQELRTKLTEQFKARSKELTGRINA-----KQLELNAVMQEKEVIQEELNTTK 1475


>gi|330685703|gb|EGG97342.1| threonine--tRNA ligase [Staphylococcus epidermidis VCU121]
          Length = 523

 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGG 696
            I+ +N  +  +++ R++A A          Y   +     E E+  ++S      LC G
Sbjct: 6   KIVDENHKIERKVVTRDEAKAFF----KDDPYKLELIDAIPEDENVTLYSQGEFTDLCRG 61

Query: 697 THVSSTGEIMLLYIVSESS 715
            HV ST +I    ++S + 
Sbjct: 62  VHVPSTSKIKEFKLLSTAG 80


>gi|57642146|ref|YP_184624.1| chromosome segregation protein [Thermococcus kodakarensis KOD1]
 gi|68565874|sp|Q5JHN1|RAD50_PYRKO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|57160470|dbj|BAD86400.1| DNA double-strand break repair ATPase Rad50 homolog [Thermococcus
           kodakarensis KOD1]
          Length = 883

 Score = 41.6 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           +AR  L  ++  L+ L +     Q        RVEE+ E+ ++L+ +  K K    +   
Sbjct: 242 KARVELKSEEGNLRELEAKKSGIQSMIRETEKRVEELKEKVKELESLEEKAKEYERLSRF 301

Query: 787 SCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             +    +N +  +++     ++ L+  +D L KK     +  +   KE     L  + E
Sbjct: 302 YRNFTEGINRIEKLLATYSQQAENLRERIDELSKK--EARVKELLKEKEGLQKELGALEE 359

Query: 845 DLLDRFNAVDLA 856
           DL     A +L 
Sbjct: 360 DLKAYQRAKELM 371


>gi|303239635|ref|ZP_07326160.1| phosphoribulokinase/uridine kinase [Acetivibrio cellulolyticus CD2]
 gi|302592806|gb|EFL62529.1| phosphoribulokinase/uridine kinase [Acetivibrio cellulolyticus CD2]
          Length = 557

 Score = 41.6 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           +L  A+  +           I+  G+  ++  +  +T+ E+  IE+ + ++I Q +P + 
Sbjct: 85  VLIKAVHDLFPDRKVTISHSIS-KGIFCEINGATQLTAEEVSKIEERMKELINQKIPFIK 143

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696
           RIM+ ++A          +K     R  ++EY      +   C G
Sbjct: 144 RIMSIDEAKEIF------SKTGRIDRFRAIEYRKKPYVTIYNCDG 182


>gi|327308738|ref|XP_003239060.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
 gi|326459316|gb|EGD84769.1| threonyl-tRNA synthetase [Trichophyton rubrum CBS 118892]
          Length = 764

 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      T  G  +D+   +   +T A+   ++     I  
Sbjct: 158 HSSAHALGEACECQYGCLLSHGPP--TAQGFFYDMAIPEGGVVTQADYPLLDAKTAKIFK 215

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++E+       +     Y D      +E E   V+       LC G H+ 
Sbjct: 216 EKQSFDRLEVSKENLKKMFGYSKYKLHYIDN----LIEGESSTVYRCGTLVDLCRGPHIQ 271

Query: 701 STGEIMLLYIVSESS 715
           +TG+I  + I   SS
Sbjct: 272 NTGKIKAMKITQNSS 286


>gi|158321035|ref|YP_001513542.1| phosphoribulokinase/uridine kinase [Alkaliphilus oremlandii OhILAs]
 gi|158141234|gb|ABW19546.1| phosphoribulokinase/uridine kinase [Alkaliphilus oremlandii OhILAs]
          Length = 558

 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFV---HHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           D G    + I   I D Q +  G+ +    H                        ++   
Sbjct: 34  DFGDTYENQIVGAIVDNQLEELGVILSEDCHVRFLEQCSSIGA------------RIYQR 81

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
             +   +   +    G  VS   S     GL  ++ + + +   + K IE+ + +IIA++
Sbjct: 82  SLSFVFIRACMELFSGCQVSVEHSL--SKGLYCEIQYKRDLNEEDTKRIEERMREIIAED 139

Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
           +P++   +  ++AI          +Y    +V  ++Y D    +   CG
Sbjct: 140 VPLIKSRVPVDEAIDIF------KEYGQNGKVNLMKYRDKPYINIYQCG 182


>gi|315054053|ref|XP_003176401.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
 gi|311338247|gb|EFQ97449.1| threonyl-tRNA synthetase [Arthroderma gypseum CBS 118893]
          Length = 765

 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      T  G  +D+   +   +   +  +++     I  
Sbjct: 157 HSSAHALGEACECHYGCLLSHGPP--TAQGFFYDMAIPEGGVVHQTDYPALDAKTAKIFK 214

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++++       +     Y D      VE E   V+       LC G H+ 
Sbjct: 215 EKQSFDRLEVSKDNLKKMFGYSKYKLHYIDN----LVEGESSTVYRCGTLVDLCRGPHIQ 270

Query: 701 STGEIMLLYIVSESS 715
           +TG+I  + I   SS
Sbjct: 271 NTGKIKAMKITQNSS 285


>gi|110803840|ref|YP_698903.1| peptidase, M23/M37 family protein [Clostridium perfringens SM101]
 gi|110684341|gb|ABG87711.1| peptidase, M23/M37 family protein [Clostridium perfringens SM101]
          Length = 431

 Score = 41.2 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDLSCHK 790
              +    ++LKS  S LK  +  +  +  ++  E ++   + ++ + QLN +  L   K
Sbjct: 177 IDDIKKVQDELKSEESQLKSQEEELSSKKTKLENEKKEYDNLVSQYQSQLNELNSLEEQK 236

Query: 791 IADVNFMS----HIISEV-----DSKELKSVMDALQKKIQS 822
            A++N +S     ++ E+     D+  LK  ++ L  + +S
Sbjct: 237 QAEINSLSEKERAVLDEINSYEEDNANLKDYINNLINEKKS 277


>gi|295667866|ref|XP_002794482.1| chaperone protein clpB [Paracoccidioides brasiliensis Pb01]
 gi|226285898|gb|EEH41464.1| chaperone protein clpB [Paracoccidioides brasiliensis Pb01]
          Length = 732

 Score = 41.2 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 740 EKLKSLASFLKVSQGNVV------GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           E+ + L   LK  Q  V        + +   +  ++ +    + ++ L       +    
Sbjct: 300 ERREKLEELLKTKQDEVKEFTDVWEKEKAELDAIKQAKEDLERARVDLEQAQREGNFAKA 359

Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV-GISKEKKASVLIVVTEDLLDRFNA 852
                 II ++++K  K   D        G+++L   ++ +  A V+   T   +++  A
Sbjct: 360 SELRYSIIPKLENKLPKEGSDTATSTTADGVVLLHDSVTSDDIAGVVSRTTGIPVNKLMA 419

Query: 853 VDLARLS 859
            ++ +L 
Sbjct: 420 GEVEKLI 426


>gi|332018820|gb|EGI59379.1| hypothetical protein G5I_12477 [Acromyrmex echinatior]
          Length = 279

 Score = 41.2 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVV--------GRVEEIWEEYRKLQLIHAKR 777
              + A++ L    + +  +   LK  +  +V         R++ I + + +L     K+
Sbjct: 87  KAKENAKNDLQEGKKNINQVLEKLKNVEKEIVTNYQYALNDRIQNIKDTFGELNKEELKQ 146

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVD------SKELKSVMDALQKKIQSGI 824
           KLQ N+ + S   + + + +      VD       KELK+++D    K++  I
Sbjct: 147 KLQDNLTNSSKEIMDNADEVKKFEENVDEILEKSDKELKNILDKSFDKLKEAI 199


>gi|307947216|ref|ZP_07662551.1| putative aspartate aminotransferase 2 [Roseibium sp. TrichSKD4]
 gi|307770880|gb|EFO30106.1| putative aspartate aminotransferase 2 [Roseibium sp. TrichSKD4]
          Length = 389

 Score = 41.2 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 325 LLPALCTEMGSAY---PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381
           L+  +     S Y   PEL Q           E E       +   LL   L  LG D++
Sbjct: 257 LVRPVERIAQSLYISPPELSQIAATAALDAHEELEAIKSGYAQNRTLLMQELPKLGFDKL 316

Query: 382 LNGDVAFKLY-DTHGLPLD---IMQDILCARGLAGIDIISFN 419
           L  D AF +Y DT     D     + +L    +A      F+
Sbjct: 317 LPVDGAFYVYADTRWFSNDSLTFTKSMLEEARVAATPGADFD 358


>gi|307185010|gb|EFN71239.1| Nuclear pore complex protein Nup88 [Camponotus floridanus]
          Length = 476

 Score = 41.2 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 13/148 (8%)

Query: 698 HVSSTGEIMLLY---IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754
           H ++            V E  I   +R ++A+     ++HL+ + + L      L+ +  
Sbjct: 296 HATNIFRTQHFVQHDKVREE-ISKKVRSLKAL-----KTHLLKELDSLMETKKELRHTAE 349

Query: 755 NVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
           ++  R E+I +  ++L  +   A R +      ++  + A+   +  +  ++   +++  
Sbjct: 350 HLAERYEDINDNQKELARRAEEALRLVNYKEPSMTAVERAEAEVLKKMNDKIHDMQIR-- 407

Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLI 840
           +D L+KK Q         S EKK  ++ 
Sbjct: 408 LDQLKKKSQQIKHTDASESNEKKKEIVF 435


>gi|159468123|ref|XP_001692232.1| not-complex component [Chlamydomonas reinhardtii]
 gi|158278418|gb|EDP04182.1| not-complex component [Chlamydomonas reinhardtii]
          Length = 735

 Score = 41.2 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 19/176 (10%)

Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
             ++       + S   G        G   R     +         ++      +  +VE
Sbjct: 66  ERDMERFKACEKESKAKGN-----AAGGADRD---PKQRAKDEARDWINTVVDQLTEKVE 117

Query: 762 EIWEEYRKLQLIHAKRKL----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817
            +  E  +LQ    KR+        +E+        V+ +  ++  +D++ ++   D L 
Sbjct: 118 TMEAEMEELQANVKKRQKPPARLTALEETVGRHKEHVDRLEKVLRCIDNETIQP--DELS 175

Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL---DRFNAVDLARLSAKV--LGGGGG 868
              +   + L     +     +  V +  +   DR +AVD A  +A +  +  G G
Sbjct: 176 DLKEDMDMYLGSEDGDDSGMDMTHVDDMYVMFQDRLDAVDNAAPAAPLHSVKHGKG 231


>gi|7329632|emb|CAB82697.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 41.2 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  +VE++ +E  ++Q + + ++ Q   +    + 
Sbjct: 615 RSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMR 674

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +   V   + I +E D++  +     LQ+K +  +  L  + K
Sbjct: 675 VEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALAEMEK 719


>gi|224178769|ref|XP_002199495.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata]
          Length = 333

 Score = 41.2 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G  +         +G  +D     + ++S E   +E+   +II
Sbjct: 34  YWHSSAHILGEAMEGYFGGCLCYGPPI--ENGFHYDMYIEDRSVSSTEFPLLENRCKNII 91

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        + +E  +               K       V   Y  G +    LC G H
Sbjct: 92  KEKQAFERLEVKKEILLDMFKYNKFKCRILNEKVKTPTTTV---YRCGPLID--LCKGPH 146

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I+  SS
Sbjct: 147 VRHTGKIKALKIIKSSS 163


>gi|74180977|dbj|BAE27768.1| unnamed protein product [Mus musculus]
          Length = 2031

 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1152 KEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEE 1211

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +V+ +   + + ++K  ++ +  +++K    + 
Sbjct: 1212 LEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQEMRQKHSQAVE 1270

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
             L    ++ K     +            +LA     +L G G
Sbjct: 1271 ELADQLEQTKRVKATLEKAKQTLENERGELANEVKALLQGKG 1312


>gi|237843535|ref|XP_002371065.1| hypothetical protein TGME49_013260 [Toxoplasma gondii ME49]
 gi|211968729|gb|EEB03925.1| hypothetical protein TGME49_013260 [Toxoplasma gondii ME49]
          Length = 1108

 Score = 41.2 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R E    +R   +     + LK  A  L+     +  +V ++ E  RKL+L   KR++  
Sbjct: 497 RAEWRRQERVERYQERVQKTLKEKAMGLREKVEEIRRKVRKLSETERKLRLR--KRQMYR 554

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            V+ L   K        H +S + ++  +     LQ+K+
Sbjct: 555 LVDALDAEKRLGERVYRH-VSGLKAETQREREALLQEKM 592


>gi|291395207|ref|XP_002714160.1| PREDICTED: threonyl-tRNA synthetase-like [Oryctolagus cuniculus]
          Length = 723

 Score = 41.2 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            L  + +L L        Q    HS+ H++  A+  + G  +         +G  +D+  
Sbjct: 132 PLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYL 189

Query: 624 SKP-ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVR 677
            +  ++S +  S+E     I+ +        + +E  +               K N    
Sbjct: 190 EEGGVSSNDFASLETVCKKIMKEKQAFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTT 249

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
            V   Y  G +    LC G HV  TG+I  L I   SS
Sbjct: 250 TV---YRCGPLID--LCRGPHVRHTGKIKTLKIHKNSS 282


>gi|42565945|ref|NP_567014.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]
          Length = 777

 Score = 41.2 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  +VE++ +E  ++Q + + ++ Q   +    + 
Sbjct: 620 RSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMR 679

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +   V   + I +E D++  +     LQ+K +  +  L  + K
Sbjct: 680 VEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALAEMEK 724


>gi|320009814|gb|ADW04664.1| transcriptional regulator, GntR family [Streptomyces flavogriseus
           ATCC 33331]
          Length = 227

 Score = 41.2 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 16/112 (14%)

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
             ++ R+E++ EE R+L            V DL+   + D  F + I+    ++ L  + 
Sbjct: 114 AQLIARLEQLLEEQREL----------AEVGDLAAVSVKDRCFHAEIVKNAGNEILSRLY 163

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTE--DLLDRFNAVDLARLSAKVL 863
           D L+ +    + M V + +     +   +TE  +LLD   A D A  +A+V+
Sbjct: 164 DQLRDRQ---LRMGVAVMEAHPGRIAANITEHGELLDAIRAGD-AEGAAQVV 211


>gi|332023831|gb|EGI64055.1| Spindle assembly abnormal protein 6-like protein [Acromyrmex
           echinatior]
          Length = 673

 Score = 41.2 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 49/265 (18%)

Query: 571 LVLTIDYQN-----RRQLSINHSATH-LLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624
               +++Q      + ++   H+ T   LH  L+ +   +++        +    +    
Sbjct: 242 AQARLEWQRQSEKEKMEIEQRHAETVKQLHTELAELRTQNMTYKDKQSFLEATNTEQVKQ 301

Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA--SGAAALLGTKYNDRVRVVSVE 682
                 +L  +E +   +  QN  +     +R+ A+       A+L  +  D+  ++   
Sbjct: 302 LQTLEKQLNIVERDSALLKKQNSKLDVDYHDRDQAVNSLRTKVAVLEQELKDKTVII--- 358

Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742
                                 + +L    E               Q     L  +D +L
Sbjct: 359 -------------------NKHMEMLKTGKEQK-------------QHLEDLLTERDSQL 386

Query: 743 KSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDLSCHKIADVNFMS 798
           +   + LK     +V   E + +   +L    +K KL     L  E L   K  +V  + 
Sbjct: 387 QRKQNSLKSLSDELVKANEILTKLQNELASTKSKLKLRTSIALEQERLLDSKQKEVGQLE 446

Query: 799 HIISEV--DSKELKSVMDALQKKIQ 821
             +  +  D+++ KS +D L+++I+
Sbjct: 447 IKMEGLFKDARDAKSEVDNLKEQIK 471


>gi|196012975|ref|XP_002116349.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
 gi|190580940|gb|EDV21019.1| hypothetical protein TRIADDRAFT_50865 [Trichoplax adhaerens]
          Length = 680

 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK-PITSAELKSIEDNVNDII 643
             HS+ H+L  A+    G  +         +G  +D+   K  ++  + + ++  V  I+
Sbjct: 112 YWHSSAHILGEAMERYFGGCLCYGPPI--AEGFYYDMFIEKNQVSGNDFEKLDTIVKAIL 169

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHV 699
               P V   M +ED +          +  +      V+     V+       LC G HV
Sbjct: 170 KDKQPFVKLEMKKEDLLEMFKYNKFKVRILEER----VKTPTTTVYRCGPLIDLCRGPHV 225

Query: 700 SSTGEIMLLYIVSESS 715
             TG+I  + +   SS
Sbjct: 226 RHTGKIKAMTLTKNSS 241


>gi|254385099|ref|ZP_05000432.1| hypothetical protein SSAG_04795 [Streptomyces sp. Mg1]
 gi|194343977|gb|EDX24943.1| hypothetical protein SSAG_04795 [Streptomyces sp. Mg1]
          Length = 331

 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 23/137 (16%)

Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVD 277
               M++D G GLER+A        N++  +F    + +   T               +D
Sbjct: 215 DPTYMAVDLGTGLERLAWA--RTQQNWNELIFGRFAETAPPAT---------------LD 257

Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337
            +R+++ L+  GI P   G G + RR++     +A  LG +       +     E  S +
Sbjct: 258 AIRTATLLLGHGINPTTRGAGGITRRVIGAIDPHAVHLGVSS------MARHAYEYWSLF 311

Query: 338 PELIQAKLLIEETLRSE 354
             L      I   +  E
Sbjct: 312 SGLRAPWPHIVHAIEEE 328


>gi|221484780|gb|EEE23074.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 1108

 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           R E    +R   +     + LK  A  L+     +  +V ++ E  RKL+L   KR++  
Sbjct: 497 RAEWRRQERVERYQERVQKTLKEKAMGLREKVEEIRRKVRKLSETERKLRLR--KRQMYR 554

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
            V+ L   K        H +S + ++  +     LQ+K+
Sbjct: 555 LVDALDAEKRLGERVYRH-VSGLKAETQREREALLQEKM 592


>gi|326477787|gb|EGE01797.1| threonyl-tRNA synthetase [Trichophyton equinum CBS 127.97]
          Length = 763

 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP--ITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      T  G  +D+   +   +T A+   ++     I  
Sbjct: 158 HSSAHALGEACECQYGCLLSHGPP--TAQGFFYDMAIPEGGVVTQADYPLLDAKTAKIFK 215

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++E+       +     Y D      VE E   V+       LC G H+ 
Sbjct: 216 EKQSFDRLEVSKENLKKMFGYSKYKLHYIDN----LVEGESSTVYRCGTLVDLCRGPHIQ 271

Query: 701 STGEIMLLYIVSESS 715
           +TG+I  + I   SS
Sbjct: 272 NTGKIKAMKITQNSS 286


>gi|297840519|ref|XP_002888141.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333982|gb|EFH64400.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 71

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896
           +P  AQ+GG        A+A     L
Sbjct: 37  KPSFAQAGGRKPENLPSALAKAREDL 62


>gi|327269839|ref|XP_003219700.1| PREDICTED: rho-associated protein kinase 1-like [Anolis carolinensis]
          Length = 1357

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 699  VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
              +  E     +  ES   A   R E        S L   +  L    +FL      +  
Sbjct: 907  ARALLEEQYFELSQESKKAASRHRQEIADKDGIVSRLEETNNTLTKDVAFLTKENSELNE 966

Query: 759  RVEEIWEEYR---KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD- 814
            +V+++ E+Y+   + ++   + + + N+ +    K   VN ++ I++  D K  +  ++ 
Sbjct: 967  KVKKLEEDYKLKTEEEISIIRMQYEKNLNNERTLKTQAVNKLAEIMNRKDFKLDRKKVNM 1026

Query: 815  -ALQKKIQSGIIMLVGISKEK 834
               +KK +    + + +++EK
Sbjct: 1027 QDFKKKEKENRKLQLDLNQEK 1047


>gi|147768444|emb|CAN62833.1| hypothetical protein VITISV_012130 [Vitis vinifera]
          Length = 1621

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 36/229 (15%)

Query: 615  DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
            + +   +   + + +     IE     +  +   + T +++          + L  +  D
Sbjct: 1065 ESIYKALQKKEKLLADVRTQIEQLKASMAMKQAEMGTDLIDHLTPEEKDLLSRLNPEITD 1124

Query: 675  ------RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728
                    R   +E E              V    E+  +   +E+ I +G    EA   
Sbjct: 1125 LKDQLITCRTDRIEIETRKAELETNLTTNLVRRKLELEAIISSAETDIWSG----EA--- 1177

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI---------------------WEEY 767
            +  R  L      ++ L   LK    N+  R +++                      +E 
Sbjct: 1178 ELKRQELKEAKLLVEDLTQRLKRVSENIDERTKQLRKIKDEKNKLKSLEDNYERTLQDEA 1237

Query: 768  RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            ++L+ + +KR L L  ++    KI ++  +S      D+K + +  + +
Sbjct: 1238 KELEQLLSKRNLLLAKQEDYSKKIRELGPLSS--DAFDTKCMCTCANYI 1284


>gi|114326446|ref|NP_071855.2| myosin-9 isoform 1 [Mus musculus]
 gi|205371802|sp|Q8VDD5|MYH9_MOUSE RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|74180962|dbj|BAE27761.1| unnamed protein product [Mus musculus]
 gi|74180967|dbj|BAE27763.1| unnamed protein product [Mus musculus]
 gi|74180971|dbj|BAE27765.1| unnamed protein product [Mus musculus]
 gi|74180973|dbj|BAE27766.1| unnamed protein product [Mus musculus]
 gi|74180975|dbj|BAE27767.1| unnamed protein product [Mus musculus]
 gi|74180985|dbj|BAE27772.1| unnamed protein product [Mus musculus]
 gi|74180987|dbj|BAE27773.1| unnamed protein product [Mus musculus]
 gi|74180995|dbj|BAE27776.1| unnamed protein product [Mus musculus]
 gi|74180997|dbj|BAE27777.1| unnamed protein product [Mus musculus]
 gi|74180999|dbj|BAE27778.1| unnamed protein product [Mus musculus]
 gi|74181014|dbj|BAE27783.1| unnamed protein product [Mus musculus]
 gi|74181018|dbj|BAE27785.1| unnamed protein product [Mus musculus]
 gi|74181123|dbj|BAE27829.1| unnamed protein product [Mus musculus]
 gi|74184545|dbj|BAE27894.1| unnamed protein product [Mus musculus]
 gi|74184580|dbj|BAE27906.1| unnamed protein product [Mus musculus]
 gi|123233477|emb|CAM23428.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus]
 gi|148697703|gb|EDL29650.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus]
          Length = 1960

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +V+ +   + + ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
             L    ++ K     +            +LA     +L G G
Sbjct: 1200 ELADQLEQTKRVKATLEKAKQTLENERGELANEVKALLQGKG 1241


>gi|17978023|emb|CAC85955.1| nonmuscle heavy chain myosin II-A [Mus musculus]
          Length = 1960

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +V+ +   + + ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
             L    ++ K     +            +LA     +L G G
Sbjct: 1200 ELADQLEQTKRVKATLEKAKQTLENERGELANEVKALLQGKG 1241


>gi|325116231|emb|CBZ51784.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1078

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
           RVE + E+ R L +   + ++   +  +   +         +    D+  L+  MDA  K
Sbjct: 526 RVESLSEQLR-LAVEQLQERVMRTLSVIEPSEEDKPATEKKVEETKDAVALRQAMDATVK 584

Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARLSAKVLGGGGGGGRPHMAQ 876
              +    L    KE KA  L     +   R  A+  DL   +A +L  GG GG P  AQ
Sbjct: 585 LANTMTAALQFTKKEVKALQLFSAHSEGGLRAGALFEDLGSSAAHLLKQGGSGGSP--AQ 642


>gi|126729046|ref|ZP_01744860.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata
           E-37]
 gi|126710036|gb|EBA09088.1| single-stranded-DNA-specific exonuclease RecJ [Sagittula stellata
           E-37]
          Length = 581

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804
           LAS        +  R+E +  E R+++               +  +  D   +       
Sbjct: 312 LASDNPAEAQAMAERLEALNAERREIEAAVR-----AAALAQAEARGLDAPLIWAAGEGW 366

Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864
               +  V   L++      I++     E K S   V   DL          RL+A+ L 
Sbjct: 367 HPGVVGIVASRLKEHTGRPSIVIGLDGAEGKGSGRSVAGVDLGASVQ-----RLAAEGLL 421

Query: 865 GGGGGGRPHMAQSGGPNG-NKADQAIAGVASFLKK 898
             GGG R  MA +G     ++ ++A+A ++  L+K
Sbjct: 422 IKGGGHR--MA-AGLTVARDRLEEAMARLSELLEK 453


>gi|227551963|ref|ZP_03982012.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257895444|ref|ZP_05675097.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378311|ref|ZP_06624480.1| hypothetical protein CUO_0199 [Enterococcus faecium PC4.1]
 gi|227178868|gb|EEI59840.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257832009|gb|EEV58430.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|292643175|gb|EFF61316.1| hypothetical protein CUO_0199 [Enterococcus faecium PC4.1]
          Length = 259

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIHAKRKLQLNVE 784
           +   S+L  +   +K  A    + +  +      I EE +    +L+   +K K+Q  V 
Sbjct: 77  EETVSNLSHKLSSIKLSADDFDIKESELPKEAAAIQEEKKAVLTQLEDAESKLKIQTAVN 136

Query: 785 DLSCHKIADVN------FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
            L    +++         +   ++  D   ++  M   +      ++M
Sbjct: 137 KLFTKNVSNWQQAVDDVIIKEKLASADVAHVRENMSFFKDSAWKTVVM 184


>gi|148750839|ref|YP_001285882.1| putative scaffolding protein, structural protein [Lactobacillus
           phage LL-H]
 gi|418227|sp|Q04763|VG20_BPLLH RecName: Full=Minor structural protein Gp20; AltName: Full=ORF2
           protein
 gi|623088|gb|AAC00560.1| putative scaffolding protein, structural protein [Lactobacillus
           phage LL-H]
          Length = 178

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 17/150 (11%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQLIHAKRKLQLNV----- 783
              L  + + LK  +S L     ++      VEE+ ++  KL+  +     QLN      
Sbjct: 30  YEGLEAERDALKKTSSELSSKIEDLKANSANVEELTKQIEKLKSDNENATKQLNAQKLDF 89

Query: 784 ------EDLSCHKIADVN-FMSHIISEVDSK-ELKSVMDALQKKIQSGIIMLVGISKEKK 835
                 +D        V   ++H     DSK  L  + D L+    S   +        K
Sbjct: 90  AVTSTIKDFGAKNAKAVKALLNHDDIRFDSKGNLIGLEDQLKSLKDSDSYLFAEDKPAGK 149

Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865
             +    T + +     V L +  A+ L G
Sbjct: 150 P-IQAFPTGNPVAGGKDVSLHQKIAQRLKG 178


>gi|323450323|gb|EGB06205.1| hypothetical protein AURANDRAFT_29703 [Aureococcus anophagefferens]
          Length = 750

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 6/132 (4%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646
           HSA HLL  AL    G+ +S  G  +           ++ I+  E K I+  V  I+   
Sbjct: 161 HSAAHLLGAALEQKYGAKLSI-GPPVEGGFYYDAYIGNETISDKEFKDIQARVAKIVNAK 219

Query: 647 LPVVTRIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
                  + + + +   A     +           ++  Y  G +    LC G  V   G
Sbjct: 220 AKFERLALTKAELLDMFAYNPFKSAIIQNKVPDGAMTTAYRSGPIID--LCMGPQVPDAG 277

Query: 704 EIMLLYIVSESS 715
            +    ++  SS
Sbjct: 278 RVKAFEVLRASS 289


>gi|269792565|ref|YP_003317469.1| trigger factor [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100200|gb|ACZ19187.1| trigger factor [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 447

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 13/141 (9%)

Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE----------LIQAKLLIEET 350
           LR  +R AM  +      E +    L  LC       PE          L+  K  + + 
Sbjct: 273 LRSAIREAMEKSFERRAQEAVRESALEELCAACQVDIPEDMLQRERDHMLVHEKQRVTQQ 332

Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL---PLDIMQDILCA 407
           L+ E +++ K ++         +    ++ I    V + L D  G+   P D+  +I   
Sbjct: 333 LKKEWDQYLKEMETDEAAFAAKMEERAREIIKRELVLWTLADREGIDVSPEDLDGEIRKM 392

Query: 408 RGLAGIDIISFNQALEEQRSR 428
               G+D   F   L   R R
Sbjct: 393 SMSVGVDESKFRSFLASNRQR 413


>gi|308805795|ref|XP_003080209.1| unnamed protein product [Ostreococcus tauri]
 gi|116058669|emb|CAL54376.1| unnamed protein product [Ostreococcus tauri]
          Length = 207

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 18/120 (15%)

Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFM------------SHIISEVDSKELKSVMDALQK 818
           +   AK   +   + +     AD++ +            S  + EV  + + ++ D   +
Sbjct: 25  EKKVAKALKEGGKKGVEIEGAADMSGLTCFCTRMQEAGDSVELLEVSMEGMNAIPDPSNE 84

Query: 819 KIQSGI------IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872
           + + G       +++    + KK +++  V E L D+ NA +  +       GGG GG P
Sbjct: 85  EERKGCSGHISKLIISSNDETKKIAMVAYVAEQLKDQLNATEWMKAVCDTDLGGGVGGAP 144


>gi|189036|gb|AAA36349.1| nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
          Length = 1247

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 712 SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
            E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 367 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 426

Query: 767 YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              L+             ++L   +  +VN +   + E ++K  ++ +  +++K    + 
Sbjct: 427 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EAKTHEAQIQEMRQKHSQAVE 485

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L    ++ K     +            +LA     +L GG 
Sbjct: 486 ELAEQLEQTKRVKANLEKAKQTLENERGELANEVKVLLQGGR 527


>gi|296328718|ref|ZP_06871233.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154155|gb|EFG94958.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 558

 Score = 40.8 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 31/184 (16%)

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
             +ED  N+I   +  +     + +  A        +  KY  R     +EY +      
Sbjct: 280 YELEDCANEIEDISKGIDVTENDLDKIASRMNTLKRIKEKYK-RTLPELIEYREDLKEKL 338

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
                    S  +                        +  +  L    ++   +A  L  
Sbjct: 339 ---------SDIDSGDFKT------------------KELKKELNKIKDEYDKIAEKLTN 371

Query: 752 SQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLN-VEDLSCHKIADVNFMSHIISEVDSKEL 809
           S+  +  ++E E+  E + L +  AK K+Q+N +E ++     DV F        D K L
Sbjct: 372 SRKEIAVKIENELLNELKFLNMEDAKLKVQINKLEKMTSEGYDDVEFFISTNVGQDLKPL 431

Query: 810 KSVM 813
             + 
Sbjct: 432 NKIA 435


>gi|39942942|ref|XP_361008.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|58257459|gb|AAW69351.1| threonyl-tRNA synthetase-like protein [Magnaporthe grisea]
 gi|145009886|gb|EDJ94542.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 812

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 68/178 (38%), Gaps = 27/178 (15%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H+L  A     G  +   G  +  +G  +++       + S++ K +E  V+ I+ 
Sbjct: 163 HSSAHILGEAAERRFGCSLCI-GPPVD-NGFYYEMALPDGAAVQSSDWKPLETLVSKIVK 220

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS--------ALCGG 696
           +       ++++ED +          KYN   + +  +    G  ++         LC G
Sbjct: 221 EKQKFERLVLSKEDLLEMF-------KYNKYKQHIIKDKIADGTKTTVYRNGPLIDLCRG 273

Query: 697 THVSSTGEIMLLYIVSESSI-------RAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
            HV  TG I    I+  S+           ++RI  ++    +  L    + L+  A 
Sbjct: 274 PHVPDTGRIEAFAIMKNSASYFLGDKDNDSLQRIYGVS-FPTKKQLTEYQKFLEEAAK 330


>gi|141796054|gb|AAI34821.1| LOC100049148 protein [Xenopus laevis]
          Length = 831

 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
           L  ++ K+  L   LKV QG V+   E++ +E +KL  +  K +++ NV +L+  K  D 
Sbjct: 136 LKQEEGKVDQLNRNLKVEQGKVMEVTEKLIDESKKL--LKFKSEMEENVYNLTKEK--DE 191

Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGII 825
           +       E  + EL+  +D L K++++  +
Sbjct: 192 SLSKLRTEEDKNAELRCRVDLLMKRLENMEV 222


>gi|257460101|ref|ZP_05625205.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257442542|gb|EEV17681.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 763

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 14/167 (8%)

Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
                      + D  N+ +      +T    +E A      +    KY      V    
Sbjct: 597 PGESREEFFVRLGDRANEALEAKTDEITAKFEKEKARLEDKISRASEKYEKEKGDVLSRG 656

Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743
            D      AL  G        +     +  S     I   +AI+G ++   ++ +  + K
Sbjct: 657 VDA-----ALNIG-----GAILGAF--LGRSRSAGNIS--KAISGAKSAHKILNERSEAK 702

Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           +  + L   Q  +    ++   E   L+     + ++L  +++S  K
Sbjct: 703 NAQNSLNALQDELEVLTQKFEAEVDALKQSLDLKNIKLETKEISPKK 749


>gi|170116372|ref|XP_001889377.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635662|gb|EDQ99966.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 367

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
            A   L    E+L + A+ L  ++ ++ G +  +     + +L  AK  L L   +L   
Sbjct: 190 AATKDLKSVREELSATAAQLASARSDLAGALPLLKS--TENELSTAKSDLALTRSNL-AD 246

Query: 790 KIADVNFMSHIISE-------------------VDSKELKSVMDALQKKIQSGIIMLVGI 830
            +A+++ +   + +                   V +K+  + +    + + S  + L   
Sbjct: 247 AVAEISSLKTSLEQMSHSCEQEKLGKEVVEKRLVTAKQGLATLRDNYESLHSSFVALGKS 306

Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
            +  K S+   V E    + +A D       +L  GGG
Sbjct: 307 HEASKVSLSQAVAEATEIKRSAADALTSVKPLLEAGGG 344


>gi|219841926|gb|AAI45222.1| Golgb1 protein [Mus musculus]
          Length = 893

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 44  RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 103

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 104 KAKIMSLNK 112


>gi|225848983|ref|YP_002729147.1| UTP-glucose-1-phosphate uridylyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644650|gb|ACN99700.1| UTP-glucose-1-phosphate uridylyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 296

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           +  +++ + E ++ +GI  I  +TG  +RA         +L+ +    K  +   + ++ 
Sbjct: 34  DKPIIHYIVEEAVNSGIETIIFVTGRHKRAIEDYFDYYPELEQVLK--KAGKEKEIEKLR 91

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-IADVNFMSH----IISEVDSKELKSVMDAL 816
           +I     +   I  K +L L    L+  + + D  F+      II   ++  +K ++D +
Sbjct: 92  QI-SNMAEFVYIRQKEQLGLGHAVLTAERLVGDEPFVVLLGDEIIKNDENPGIKQLID-I 149

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
             +    +I  + + KE  +   IV  +++++    V+
Sbjct: 150 YYQFGKSVIGTMEVQKEDVSKYGIVAGKEVINGIKLVE 187


>gi|62321281|dbj|BAD94497.1| hypothetical protein [Arabidopsis thaliana]
          Length = 316

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  +VE++ +E  ++Q + + ++ Q   +    + 
Sbjct: 117 RSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMR 176

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +   V   + I +E D++  +     LQ+K +  +  L  + K
Sbjct: 177 VEQEQKVTEDARIFAEQDAEAQRYAAQVLQEKYEEAVAALAEMEK 221


>gi|296814972|ref|XP_002847823.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
 gi|238840848|gb|EEQ30510.1| threonyl-tRNA synthetase [Arthroderma otae CBS 113480]
          Length = 739

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS--KPITSAELKSIEDNVNDIIA 644
           HS+ H L  A     G  +S      T  G  +D+       +T  +  S++     I  
Sbjct: 134 HSSAHALGEACECQYGCLLSHGPP--TAHGFFYDMAIPNGGVVTQGDWPSLDSKTTRIFK 191

Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVS 700
           +        +++E+       +     Y D      +E E   V+       LC G H+ 
Sbjct: 192 EKQSFDRLEVSKENLKKMFGYSKYKLHYIDN----LIEGESSTVYRCGTLVDLCRGPHIQ 247

Query: 701 STGEIMLLYIVSESS 715
           +TG+I  + I+  SS
Sbjct: 248 NTGKIKAMKIMQNSS 262


>gi|258564985|ref|XP_002583237.1| hypothetical protein UREG_06204 [Uncinocarpus reesii 1704]
 gi|237906938|gb|EEP81339.1| hypothetical protein UREG_06204 [Uncinocarpus reesii 1704]
          Length = 1483

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGN------VVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            + A  +L     ++K LA+ LK S  +      +  R+ ++  E  +L+   A  + ++ 
Sbjct: 1036 ESAGRNLADAKRRVKELAAELKPSNNDDTRAGPLEKRIAKLETEINQLRAEKAGIEEEIQ 1095

Query: 783  VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                   +I  V              LK  +  L +++ S  +
Sbjct: 1096 ALQDKIMEIGGVKLRGQKAK---VDGLKEQISLLTEEVSSAEV 1135


>gi|309361560|emb|CAP29412.2| hypothetical protein CBG_09865 [Caenorhabditis briggsae AF16]
          Length = 1676

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 88/258 (34%), Gaps = 30/258 (11%)

Query: 615  DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA---LLGTK 671
            + +R +    + I S     +    ND++ Q   V    M+ ++  +    A       K
Sbjct: 1272 EKMRVEFIAKEKIISDLRAELAAINNDLVVQKAKVEKSKMDMDELESKEKRAASDRENEK 1331

Query: 672  YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
              + +R+     ++     SAL              L   +E  I     + E      A
Sbjct: 1332 -QEEIRLRETFAKELETMGSALEAK-----ETAYNELKQRAEKKIAKLNAQFEEKLKAEA 1385

Query: 732  RSHLMGQ-------DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
               +  Q       + ++K L +  + S+  +  R+  + E  + +Q  +   KL+    
Sbjct: 1386 EKLVNAQKNQDEASESRIKELEASSEQSKLELEQRLRSLEESLKSIQSENDALKLKEEAA 1445

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            +    +         ++   ++KEL   ++ L+ +++      + ++ E K         
Sbjct: 1446 E---KEKGHWEVEKEMLEG-EAKELAEKIEGLESEVKR-----LTVANESK-----AAKA 1491

Query: 845  DLLDRFNAVDLARLSAKV 862
            D   R    +L +   ++
Sbjct: 1492 DTDSRKVVRELQKEVKQL 1509


>gi|57641532|ref|YP_184010.1| V-type ATP synthase subunit I [Thermococcus kodakarensis KOD1]
 gi|74502607|sp|Q5JDS2|VATI_PYRKO RecName: Full=V-type ATP synthase subunit I; AltName: Full=V-ATPase
           subunit I
 gi|57159856|dbj|BAD85786.1| archaeal/vacuolar-type H+-ATPase, subunit I [Thermococcus
           kodakarensis KOD1]
          Length = 663

 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794
               ++ +K +  FL    G V   ++ I      L     + K Q+ + D+      DV
Sbjct: 95  YERLEKLIKDVEEFL----GKVEPEIKAIEGRMNSLSTEIERIKEQIGILDILTPLNIDV 150

Query: 795 NFMSH------IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
           +++ H       +  VD   +K + DAL+K+ ++ + ++   + +K   V++ +  D  D
Sbjct: 151 SYLRHCGVVEVTVGLVDRTRVKELADALKKETENHVAIITKEASDKALVVIVNLARD-HD 209

Query: 849 RFNAVDLARLSAKVL 863
           + N + LA+ S + L
Sbjct: 210 KVNTL-LAKFSVEKL 223


>gi|84998192|ref|XP_953817.1| threonyl-tRNA synthetase [Theileria annulata]
 gi|65304814|emb|CAI73139.1| threonyl-tRNA synthetase, putative [Theileria annulata]
          Length = 743

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVN 640
           Q    HS+ H+L  AL T  G  ++   +  +  G  +DV   +  +   ++K +  +V 
Sbjct: 151 QHVYWHSSAHILGSALETCFGGFLTIGPALSS--GFYYDVYLGNNSVKPEDVKPLLSHVE 208

Query: 641 DIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
            +   N P    +  +E+A+           L+  K  D    V     D       LC 
Sbjct: 209 ALTNLNSPFERLVCTKEEALELMKYNPFKVQLIKNKVPDGENTVCYRCGD----FVDLCR 264

Query: 696 GTHVSSTGEIML--LYIVSESS 715
           G H+ +T  +      +   SS
Sbjct: 265 GPHIPTTSMVRANSFDVTKISS 286


>gi|71033673|ref|XP_766478.1| threonyl-tRNA synthetase [Theileria parva strain Muguga]
 gi|68353435|gb|EAN34195.1| threonyl-tRNA synthetase,  putative [Theileria parva]
          Length = 779

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVN 640
           Q    HS+ H+L  AL T  G  ++   +  +  G  +DV   +  +   ++K +  +V 
Sbjct: 203 QHVYWHSSAHILGSALETCFGGFLTIGPALSS--GFYYDVYLGNNSVKPEDVKPLLSHVE 260

Query: 641 DIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695
            +   N P    +  +E+A+           L+  K  D    V     D       LC 
Sbjct: 261 ALTNLNSPFERLVCTKEEALELMKYNPFKVQLIKNKVPDGENTVCYRCGD----FVDLCR 316

Query: 696 GTHVSSTGEIML--LYIVSESS 715
           G H+ +T  +      +   SS
Sbjct: 317 GPHIPTTSMVRANSFDVTKISS 338


>gi|330432832|gb|AEC17891.1| periplasmic chaperone [Gallibacterium anatis UMN179]
          Length = 175

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 23/145 (15%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-------VVGRVEEIWEEYRKLQLIHA 775
           I  I       H   ++  LK L +  K            +V +++++ ++ + L+    
Sbjct: 30  IVFINSAYIFQHAPEREAALKKLDAEFKTPVEELQKKEKVIVDKIQKLQKDAKNLRQADI 89

Query: 776 KRKLQLNVEDLSCHKIADVNFMSHII----SEVDSKEL----KSVMDALQKKIQSGII-- 825
           K++ +  +  L      + N +   I    +E D+K +    K + D  ++K  S +I  
Sbjct: 90  KKR-EDEINKLRVDYDKEANELQQKINARRAEEDNKVVESIQKVINDIAKEKKYSFVIDA 148

Query: 826 MLVGISKEKKASVLIVVTEDLLDRF 850
             V  + + K      +T+D++ + 
Sbjct: 149 NAVAFATDDKN-----ITKDVMAKL 168


>gi|312214978|emb|CBX94931.1| hypothetical protein [Leptosphaeria maculans]
          Length = 736

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRK-LQLIHAKR 777
           + AR  L   + +++       VS+G +V +V           E+ EE R+  Q   AKR
Sbjct: 141 EAAREQLARLEVQVREHEEL--VSKGLLVEKVVYDKMERQMASELQEERRRRAQAESAKR 198

Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           K    VE L+     + N M    +  D++      + L++++    I+
Sbjct: 199 KTDSEVEALTAALFEEANVMVAS-ARKDTEASDRRGEQLKQQLNDAAIL 246


>gi|115390034|ref|XP_001212522.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194918|gb|EAU36618.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1982

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 127/413 (30%), Gaps = 71/413 (17%)

Query: 399  DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
            ++++    A+ L  +   +    LE    RA+  +        E+ W  LKE+Y      
Sbjct: 1111 ELLKHAEAAQNLQNVRNEANQLKLEIVELRAQTETSKSDLSKKEESWKELKERY------ 1164

Query: 459  GYDLLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                   S   K   +VL Q   +      +++ + A+ +    + E    +        
Sbjct: 1165 ---ETEISDLQKRREEVLHQNSLLHTQLENITNQISALQRDRASIPENEDEEST------ 1215

Query: 518  TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE--------M 569
                                   ++    +K+   +  H +  E   LR +         
Sbjct: 1216 -------------APNLENLQEVIKFLRREKEIVDVQYHLSTQESKRLRQQLEYTQSQLD 1262

Query: 570  SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629
               L ++ Q R      H+A    H+ L   L        S +T   LR  V  ++   +
Sbjct: 1263 ETRLKLEEQRRAAADSEHTALS--HNKLMETLNELNVFRESSVT---LRNQVKQAETALT 1317

Query: 630  AELKSIEDNVNDIIAQNLPVVTRIMNREDAI--ASGAAALLGTKYND-RVRVVSVEYEDG 686
             +   +E+    I     P+ TRI   E+ +    G   +L    +  + R   +  +  
Sbjct: 1318 EKSARVEELEKQI----EPLETRIRELENVVETKDGEIQILQKDRDFWQKRTQDILQKYD 1373

Query: 687  GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ-----RARSHLMGQDEK 741
             V  + + G               + E        R EA++ +      A +      E 
Sbjct: 1374 RVDPAEMEG---------------LKEKLETLEKERDEAVSARDTLQTEAAAFQERLAEL 1418

Query: 742  LKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIA 792
               L    K     + GR+++   E   +  +    + +L+    +L   K  
Sbjct: 1419 RARLTEQFKARSKELTGRIKDKQAELTAMAQEKDVIQEELKTTKAELDQLKAK 1471


>gi|146303552|ref|YP_001190868.1| SMC domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145701802|gb|ABP94944.1| SMC domain protein [Metallosphaera sedula DSM 5348]
          Length = 619

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 616 GLRFDVTHSKPITSAELKSI-EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674
            L  D+   + + + E+K I ED +N+I   N  +  +   R +         +G +  +
Sbjct: 260 RLELDIQQKESMITPEIKKIFEDQLNEI---NQELQRKSALRNETE-------IGIRVLE 309

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE---------SSIRAGI----R 721
           RV     + E   + +  +C G+HV        + ++SE          S++  I    R
Sbjct: 310 RVMDEIKDAEKNHLDTCYVC-GSHVDPEIWRTRIDVISEQLRMRQNSFESVKKEIDELTR 368

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           + + IT + A      + E +++    LK  +  ++ R+E + E+  +L+    + + + 
Sbjct: 369 KKDEITRKLA------EFENIRNEVVKLKTKKQELLNRMEMVKEQIGELERQKREMEDRF 422

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKE 808
           N            N ++  I+E+ +K+
Sbjct: 423 NKNSEVIRVTGPENAVTKRINELMNKK 449


>gi|68490684|ref|XP_710838.1| hypothetical LDG family protein 8 [Candida albicans SC5314]
 gi|46432089|gb|EAK91593.1| hypothetical LDG family protein 8 [Candida albicans SC5314]
 gi|238883153|gb|EEQ46791.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 167

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 16/122 (13%)

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLS----ADKIIRITTND---NFWSMAETGP 168
           K F     + Y  V  +   A   W + +G++    A+   + T ++   + +     GP
Sbjct: 27  KTFGYPPPQ-YPEVTGKSVSA---WHEGAGINYLLIAEPATKFTYDEESKHLYFEGGQGP 82

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            GP  + +F  G+  PG L  +  +    I I NL F+ FE        +    +ID   
Sbjct: 83  NGPL-KWYFTIGDGEPGILQANPTDHPTEITIDNLGFITFE----GSYNVKGVKNIDDPY 137

Query: 229 GL 230
             
Sbjct: 138 NY 139


>gi|282174120|ref|YP_003358222.1| ORF83 [Anguillid herpesvirus 1]
 gi|281308963|gb|ADA57846.1| ORF83 [Anguillid herpesvirus 1]
          Length = 3392

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 41/229 (17%)

Query: 625  KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE 684
            K   ++EL++   + ND +     + +     E A           K + +VR + +E  
Sbjct: 1883 KSNVTSELEAAIKSKNDAVESMALLESERQKLELAGKDLHQK--NEKLSQQVRSLELELT 1940

Query: 685  DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI-TGQRARSHLMGQDEKLK 743
            D     S    G  V +  +           ++A    IE + T +RA   L  + +  K
Sbjct: 1941 DVRSTVSGTDQGVAVQNAIQ---------EKVKA----IEELETERRAVQRLQHELQTAK 1987

Query: 744  SLASFLKVSQGN-VVGRVEEIWE-----------------EYRKLQLIHAKRKLQLNVED 785
            +    LK    N +    E++ E                   ++L+ ++ +   Q +  +
Sbjct: 1988 AAYDQLKTQTTNSITDATEKLQEMTKQRDIVRDECGNAKDRIKQLEKLNLELTAQKSDAE 2047

Query: 786  LSCHKIAD-----VNFMSHIISEVDSKELKSV--MDALQKKIQSGIIML 827
            +   ++AD     V  ++  ++E  +  ++ V   DA + K+   +  L
Sbjct: 2048 VKTARLADSLSQIVRDVAAQVAETPATTVQPVSGQDAARTKLNDALKYL 2096


>gi|196003640|ref|XP_002111687.1| hypothetical protein TRIADDRAFT_55968 [Trichoplax adhaerens]
 gi|190585586|gb|EDV25654.1| hypothetical protein TRIADDRAFT_55968 [Trichoplax adhaerens]
          Length = 7710

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 736  MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
              Q+EKLK   +  +    + + +  + +++  + ++   K+KL+ ++E+L   K   + 
Sbjct: 7036 QEQEEKLKQERNAFETQAEDDLAKAIKDFDKQLEKEMDLQKQKLKQDIEELDARKTKAIE 7095

Query: 796  FMSHIIS-EVDSKEL----KSVMDALQKKIQSGIIML 827
                    E+++K+     K  +  L  + +  ++ L
Sbjct: 7096 EKKEQAKQELEAKQKSGSSKEELQRLTDQHEKDLLAL 7132


>gi|237713017|ref|ZP_04543498.1| HipA domain-containing protein [Bacteroides sp. D1]
 gi|229446992|gb|EEO52783.1| HipA domain-containing protein [Bacteroides sp. D1]
          Length = 483

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 99/279 (35%), Gaps = 62/279 (22%)

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           E ++ +  +F++    E+       + T  GL   A   +++ ++Y+ ++F+ + Q    
Sbjct: 211 ESYHFMTRRFDRMKDGEKI-----HVQTLAGL---AHYDRDQRHSYE-EIFRIMRQM--- 258

Query: 259 VTGMKYEGNNIVNHRVIV--------DHLRSSSFLIA----DGILPANE-------GRGY 299
              + Y     +  R++         DH ++ SFL+       + PA +       G  +
Sbjct: 259 --NLPYPDQEELYRRMVFNVMSRNHDDHSKNFSFLMDRQGKWKLAPAYDLCYSYTPGGKW 316

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
             R  +        L G  +   M  L  +   MG     + + K +IE+    E   + 
Sbjct: 317 TNRHQL-------SLNGKQDNFTMEDLQKVGENMG-----IREHKQIIEKV--QETVSYW 362

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
               +   +       +GK+ +L G     +     +P     DI   +        +F 
Sbjct: 363 HETAKDCGVKPEHADFIGKNLLLFGKQLHTIQ----MP-----DIANEQ------EQAFM 407

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +A+      A       G   +E +  SL+    AT FI
Sbjct: 408 KAMRNDDFNAILELKMRGYQPSENVLKSLQPDISATNFI 446


>gi|268560050|ref|XP_002637954.1| Hypothetical protein CBG04771 [Caenorhabditis briggsae]
          Length = 1284

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           T D  + ++   +     E K I +    +  +   +      RE  I      + G + 
Sbjct: 357 TFDQKKAELEKQRDDALEEAKRISELKKRVEQELEELTILPTQREQQIEELQTRIAGLEV 416

Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVS-STGEIMLLYIVSESSIRAGIRRIE----AIT 727
             R    SV+ E    +      G H+  +  +      + E++  +  R IE     + 
Sbjct: 417 IKREHD-SVKNELSKTNEKLNQMGRHLEMADKQCTHFKSLKETAEGSRRRAIEQCNEMVV 475

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-VEDL 786
             R     +    K++     L+      V ++E + EE +++   + +    L+  +  
Sbjct: 476 RIRGLEASLENQRKVEQELETLRAENSRQVQKIEYLKEEIQEVHKDYRQELTTLSRQKSE 535

Query: 787 SCHKIADVNFMS--------------HIISEVDSKELK--SVMDALQKKIQS 822
                 DV  +                 I EV +  LK   ++D ++++   
Sbjct: 536 ERRNEEDVELLKLTLSKRESELRSARKTIEEVKADNLKVQQILDEVRRQQDK 587


>gi|18310596|ref|NP_562530.1| cell wall-binding protein [Clostridium perfringens str. 13]
 gi|18145277|dbj|BAB81320.1| probable cell wall-binding protein [Clostridium perfringens str.
           13]
          Length = 441

 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|260778516|ref|ZP_05887408.1| ClpB protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604680|gb|EEX30975.1| ClpB protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 870

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA+  ++   +   +   L+   +   +++  +     EI E  +KL    A+      
Sbjct: 428 IEAL--EQTIRYQQNEKSALEKENALFGIAEDEIAELTTEIAENEKKLTDYQAR------ 479

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
                  ++  V+ +  +  E+   + +  +D  ++   + +I  +G  + ++  V  +V
Sbjct: 480 ----WKQEVDLVDEIKTLQQEISDGQAEESVDKAKQDKLNELIDQLGELQGEEPLVNAMV 535

Query: 843 TEDLLDRFNA 852
            ++ + +  A
Sbjct: 536 DDNTIAQVIA 545


>gi|237756066|ref|ZP_04584645.1| utp--glucose-1-phosphate uridylyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691783|gb|EEP60812.1| utp--glucose-1-phosphate uridylyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 218

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 67/157 (42%), Gaps = 9/157 (5%)

Query: 704 EIMLLYIVSESSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761
           +  +++ + E ++++GI  I  +TG  +RA         +L+ +   +K  +   +  + 
Sbjct: 34  DKPIIHYIVEEAVKSGIETIIFVTGRHKRAIEDYFDYYPELEQV--LIKSGKEKEIEMLR 91

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQK-- 818
           +I     +   I  K++L L    L+    + D  F   +  E+   + K  +  L    
Sbjct: 92  QI-SNMAEFVYIRQKQQLGLGHAVLTAANLVGDEPFAVLLGDEIIKNDEKPGIKQLIDIY 150

Query: 819 -KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854
            +    +I  + +SKE  +   IV  +++++    ++
Sbjct: 151 YQFGKSVIGTMEVSKEDVSKYGIVAGKEVMNGIKLIE 187


>gi|255568157|ref|XP_002525054.1| run and tbc1 domain containing 3, plant, putative [Ricinus
           communis]
 gi|223535635|gb|EEF37301.1| run and tbc1 domain containing 3, plant, putative [Ricinus
           communis]
          Length = 845

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 732 RSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLS 787
           RS ++  +E   +L   +K  ++  +  RVE++ +E  +LQ   + ++ Q NV     + 
Sbjct: 604 RSAILRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELQRALSDKQEQENVMLQVLMR 663

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
             +   V   +   +E D+   +     LQ+K +     L  +++ +K +V+     +  
Sbjct: 664 VEQEQKVTEDARRYAEQDAAAQRYAAQVLQEKYEEA---LASLAEMEKRAVMAESMLEAT 720

Query: 848 DRFNAVDL 855
            ++ +  L
Sbjct: 721 LQYQSGQL 728


>gi|110798595|ref|YP_696301.1| peptidase, M23/M37 family protein [Clostridium perfringens ATCC
           13124]
 gi|110673242|gb|ABG82229.1| peptidase, M23/M37 family protein [Clostridium perfringens ATCC
           13124]
          Length = 441

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|237717815|ref|ZP_04548296.1| HipA domain-containing protein [Bacteroides sp. 2_2_4]
 gi|229452914|gb|EEO58705.1| HipA domain-containing protein [Bacteroides sp. 2_2_4]
          Length = 526

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 99/279 (35%), Gaps = 62/279 (22%)

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           E ++ +  +F++    E+       + T  GL   A   +++ ++Y+ ++F+ + Q    
Sbjct: 254 ESYHFMTRRFDRMKDGEKI-----HVQTLAGL---AHYDRDQRHSYE-EIFRIMRQM--- 301

Query: 259 VTGMKYEGNNIVNHRVIV--------DHLRSSSFLIA----DGILPANE-------GRGY 299
              + Y     +  R++         DH ++ SFL+       + PA +       G  +
Sbjct: 302 --NLPYPDQEELYRRMVFNVMSRNHDDHSKNFSFLMDRQGKWKLAPAYDLCYSYTPGGKW 359

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
             R  +        L G  +   M  L  +   MG     + + K +IE+    E   + 
Sbjct: 360 TNRHQL-------SLNGKQDNFTMEDLQKVGENMG-----IREHKQIIEKV--QETVSYW 405

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
               +   +       +GK+ +L G     +     +P     DI   +        +F 
Sbjct: 406 HETAKDCGVKPEHADFIGKNLLLFGKQLHTIQ----MP-----DIANEQ------EQAFM 450

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +A+      A       G   +E +  SL+    AT FI
Sbjct: 451 KAMRNDDFNAILELKMRGYQPSENVLKSLQPDISATNFI 489


>gi|168207170|ref|ZP_02633175.1| peptidase, M23/M37 family protein [Clostridium perfringens E str.
           JGS1987]
 gi|170661476|gb|EDT14159.1| peptidase, M23/M37 family protein [Clostridium perfringens E str.
           JGS1987]
          Length = 441

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|169342798|ref|ZP_02863832.1| peptidase, M23/M37 family protein [Clostridium perfringens C str.
           JGS1495]
 gi|169299055|gb|EDS81127.1| peptidase, M23/M37 family protein [Clostridium perfringens C str.
           JGS1495]
          Length = 441

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|168213583|ref|ZP_02639208.1| peptidase, M23/M37 family protein [Clostridium perfringens CPE str.
           F4969]
 gi|170714919|gb|EDT27101.1| peptidase, M23/M37 family protein [Clostridium perfringens CPE str.
           F4969]
          Length = 441

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|256842637|ref|ZP_05548138.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262409525|ref|ZP_06086066.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|256735774|gb|EEU49107.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262352539|gb|EEZ01638.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 529

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 99/279 (35%), Gaps = 62/279 (22%)

Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258
           E ++ +  +F++    E+       + T  GL   A   +++ ++Y+ ++F+ + Q    
Sbjct: 257 ESYHFMTRRFDRMKDGEKI-----HVQTLAGL---AHYDRDQRHSYE-EIFRIMRQM--- 304

Query: 259 VTGMKYEGNNIVNHRVIV--------DHLRSSSFLIA----DGILPANE-------GRGY 299
              + Y     +  R++         DH ++ SFL+       + PA +       G  +
Sbjct: 305 --NLPYPDQEELYRRMVFNVMSRNHDDHSKNFSFLMDRQGKWKLAPAYDLCYSYTPGGKW 362

Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359
             R  +        L G  +   M  L  +   MG     + + K +IE+    E   + 
Sbjct: 363 TNRHQL-------SLNGKQDNFTMEDLQKVGENMG-----IREHKQIIEKV--QETVSYW 408

Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419
               +   +       +GK+ +L G     +     +P     DI   +        +F 
Sbjct: 409 HETAKDCGVKPEHADFIGKNLLLFGKQLHTIQ----MP-----DIANEQ------EQAFM 453

Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458
           +A+      A       G   +E +  SL+    AT FI
Sbjct: 454 KAMRNDDFNAILELKMRGYQPSENVLKSLQPDISATNFI 492


>gi|152992620|ref|YP_001358341.1| hypothetical protein SUN_1027 [Sulfurovum sp. NBC37-1]
 gi|151424481|dbj|BAF71984.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 406

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 715 SIRAGI--RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KL 770
           S + GI   R +    +   +    + +    L S +K ++    G++E + EE +  ++
Sbjct: 118 SYKKGINSLRQDIAANKNTIAFYREK-KISAPLQSKIKTTKSEYAGKIEALQEENKNNEI 176

Query: 771 QLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829
           ++   K+KL     D+  +   + +N +   +   D  ++  +MD L+  I   I++L+ 
Sbjct: 177 RIGQIKQKLIQQFSDIGVNLTPEQINVLLTRVDGDDIIQMALMMDVLK-HITQQIMVLMK 235

Query: 830 ISKEK 834
            + E 
Sbjct: 236 ENSED 240


>gi|145533074|ref|XP_001452287.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124419975|emb|CAK84890.1| unnamed protein product [Paramecium tetraurelia]
          Length = 444

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           + L  Q  +L   A  L   + N++ R+ ++  E  +L      +  +   +  +   + 
Sbjct: 33  ADLKDQLGQLDKQAKQLAAERDNLLDRIAKLQAEIEQLGKQIQVKNDENAAQSKTVSTLE 92

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                     E +++ LK ++D   K++  
Sbjct: 93  G-QVAQLKPLEAENQRLKQLIDQQTKELGD 121


>gi|307184783|gb|EFN71097.1| Ankyrin-2 [Camponotus floridanus]
          Length = 4208

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 13/129 (10%)

Query: 724  EAITGQRARSHLMGQDEK----LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
             A T  +         EK    L  +    K +  +    V+E  +E +K  ++  +R  
Sbjct: 2436 TATTKDKTIKEAKKMKEKGSGFLSGIFKGAKHAVEDATDDVKEFLDETKKEAVLEEERAK 2495

Query: 780  QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
            +    DL   K      +S I    +          ++      +       K+KK  ++
Sbjct: 2496 EKAAADLKALKDKKDTVVSKIQETTE-----QTATDVKDAKDKAV----SAVKDKKDEIV 2546

Query: 840  IVVTEDLLD 848
              V++D+  
Sbjct: 2547 AEVSKDIQK 2555


>gi|228934895|ref|ZP_04097726.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824795|gb|EEM70596.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 48

 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897
           L + +   +  G GGG    A+ GG      D+ +  + S L+
Sbjct: 4   LLKEALPTIE-GKGGGNKKSARGGGKALMSGDEFLNQLISSLQ 45


>gi|257898289|ref|ZP_05677942.1| protease/peptidase [Enterococcus faecium Com15]
 gi|257836201|gb|EEV61275.1| protease/peptidase [Enterococcus faecium Com15]
          Length = 341

 Score = 40.4 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             LG  +  +     AL        PE  + + +++  + S  +RF + +  G    +  
Sbjct: 184 EKLGVEDTTVKS--GALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVSEGRNKSEEA 241

Query: 373 LSHLGKDEILNGDVA--FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421
           +  +    I +G  A    L D  G P D +Q +   + L   +++ ++ A
Sbjct: 242 VKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDAELVEYSSA 292


>gi|297820256|ref|XP_002878011.1| hypothetical protein ARALYDRAFT_324032 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323849|gb|EFH54270.1| hypothetical protein ARALYDRAFT_324032 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 825

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  +VE++ +E  ++Q + + ++ Q   +    + 
Sbjct: 614 RSALLRAEELEIALMEIVKEDNRRQLSAKVEQLEQEMAEVQRLLSDKQEQEGAMLQVLMR 673

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +   V   +   +E D++  +     LQ+K +  +  L  + K
Sbjct: 674 VEQEQKVTEDARRFAEQDAEAQRYAAQVLQEKYEEAVAALAEMEK 718


>gi|224541671|ref|ZP_03682210.1| hypothetical protein CATMIT_00843 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525420|gb|EEF94525.1| hypothetical protein CATMIT_00843 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1165

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 77/209 (36%), Gaps = 43/209 (20%)

Query: 702  TGEIMLLYIVSESSIRA--GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759
              E+  + I   S   A   I  +E +         +G+D  LK L    K  + ++ G+
Sbjct: 857  AQEVKYVRIYINSGYGAWYQISEVEFV------LEAVGEDTTLKDLIE--KAKEEDLEGK 908

Query: 760  --------VEEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDS 806
                    +E I E  + L     K +     L+  +E L    + + + +   I++ D+
Sbjct: 909  TIASRDEFLEAIIEAQKALVAEDIKNEAVINRLKKAIEGLVDAPVVNTDALVEAIAKADA 968

Query: 807  KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT-EDLLDRFNAVDLARLSAKVLGG 865
               + V  A++K ++    +      + KA +    + E++ +   A++ A    KVL G
Sbjct: 969  LTEEEVNKAIKKNVE----VFNKALADAKAVLAKDASQEEVNEAAKALNDALDGLKVLRG 1024

Query: 866  GGGGGRPHMAQSGGPNGNKADQAIAGVAS 894
                           N    + A+  V+ 
Sbjct: 1025 ---------------NPEALNAALEAVSK 1038


>gi|256389462|ref|YP_003111026.1| metal-dependent hydrolase [Catenulispora acidiphila DSM 44928]
 gi|256355688|gb|ACU69185.1| putative metal-dependent hydrolase [Catenulispora acidiphila DSM
           44928]
          Length = 300

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 78/257 (30%), Gaps = 76/257 (29%)

Query: 513 VVFDQTPFYA---EAGGQLGDTGCAIGDGIRLQITDVQK--------------------- 548
           V  + TPF+        Q GDTG  + D   L +T                         
Sbjct: 41  VFTEATPFHPVDPTWPDQPGDTGVLLTDVGELPVTGCVTAAVARAGGELLVDAEITAKRG 100

Query: 549 --KAEGIFVHHAIVERGILR---TEMSLVLTIDYQNRRQLSINHSATHLLHHALS----- 598
             +   +  H      G L       +  L +D + RR+LS+ H+A HL   AL+     
Sbjct: 101 DPEYAWLVCHLVADRAGDLPGRLVGTAAKLLVDRRRRRRLSVAHTACHLTGLALNVNLAD 160

Query: 599 ------TILG------SHVSQNGSCITPDGLRFDVTHSKPITSAEL-------------K 633
                    G        V+   S I  DG          +  A                
Sbjct: 161 RWRKPIRTDGLGRPDFDGVAIVSSRIAEDGAMDTYRLGTSLRKAGFVSEGFADGVSALQS 220

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693
           +IE +V + + Q   +                   G+  +DR     V  E     S   
Sbjct: 221 AIETSVAEWVRQAGQITVLT--------------KGSALHDRRTWECVLQEGTARTS--- 263

Query: 694 CGGTHVSSTGEIMLLYI 710
           CGGTH  +TGE+  + +
Sbjct: 264 CGGTHPQNTGELGSVTV 280


>gi|255031032|ref|ZP_05302983.1| threonyl-tRNA synthetase [Listeria monocytogenes LO28]
          Length = 160

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS----ALCGGTHVSSTGEIMLL 708
           +++RE+AI    A  +G +Y   +     E E   +++      LC G HV STG+I + 
Sbjct: 2   VVSREEAIKRFKA--IGDQYKLELIEAIPEDETVTIYTQGEFFDLCRGVHVPSTGKIQVF 59

Query: 709 YIVSESSIRAGIRR 722
            ++S   +     R
Sbjct: 60  KLLS---VAGAYWR 70


>gi|168209316|ref|ZP_02634941.1| peptidase, M23/M37 family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170712559|gb|EDT24741.1| peptidase, M23/M37 family protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 441

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|47214248|emb|CAG01925.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 891

 Score = 40.1 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 33/177 (18%)

Query: 731 ARSHLMGQ--DEKLKSLASFLKVSQGNVVGRVE-------EIWEEYRKLQLIHAKRKLQL 781
           A +H   Q  + ++K L + +K +   V  +V        ++ E+  KL+ +  K     
Sbjct: 668 ALAHAASQTLEAEVKQLQAKVKSTSAEVTKQVAANKALRGQLQEKEDKLRQLQEKASHAE 727

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841
              ++    + D+      + E++ K  +  ++ L+KK Q    +L  +   +KA     
Sbjct: 728 RDANMKRQLVEDLKTRLKFLQEME-KSYRGQVEDLEKKDQRVQTLLARLGASEKAL---- 782

Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898
                       +L + +   + G        +AQ      +K  + ++  +S L++
Sbjct: 783 -----------AELEKTATDKMEG--------LAQQSSSALDKLQRQLSQASSQLEQ 820


>gi|17536671|ref|NP_496914.1| hypothetical protein W02B8.2 [Caenorhabditis elegans]
 gi|3880401|emb|CAB03458.1| C. elegans protein W02B8.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1256

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 696 GTH-VSSTGEIMLLYIVSESSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLK 750
           G H V +  +      + E++  +  R IE     +   R     +    K++     +K
Sbjct: 430 GAHLVMADKQSSHFKTLKETAEGSRRRAIEQCNEMVARIRGLEASLENQRKVEQELEMVK 489

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE----DLSCHKIADVNFMSHIISEV-- 804
                   ++E + EE ++  L + +   +L       +    + +++      I EV  
Sbjct: 490 AENVRQAKKIEFMKEEIQETHLDYREELSKLAKGGGSHEADSQRDSELRSAKKTIQEVKA 549

Query: 805 DSKELKSVMDALQK 818
           D+K+L+ +++ +++
Sbjct: 550 DNKKLQQILEEVRQ 563


>gi|68490713|ref|XP_710824.1| hypothetical LDG family protein 8 [Candida albicans SC5314]
 gi|46432072|gb|EAK91577.1| hypothetical LDG family protein 8 [Candida albicans SC5314]
          Length = 167

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 16/122 (13%)

Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLS----ADKIIRITTND---NFWSMAETGP 168
           K F     + Y  V  +   A   W + +G++    A+   + T ++   + +     GP
Sbjct: 27  KTFGYPPPQ-YPEVTGKSVSA---WHEGAGINYLLIAEPATKFTYDEESKHLYFEGGQGP 82

Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228
            GP  + +F  G+  PG L  +  +    I I NL F+ FE        +    +ID   
Sbjct: 83  NGPL-KWYFTIGDGEPGILQANPTDHPTEITIDNLGFITFE----GSYNVKGAKNIDDPY 137

Query: 229 GL 230
             
Sbjct: 138 NY 139


>gi|242373949|ref|ZP_04819523.1| cell shape protein MreC [Staphylococcus epidermidis M23864:W1]
 gi|242348303|gb|EES39905.1| cell shape protein MreC [Staphylococcus epidermidis M23864:W1]
          Length = 283

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 19/128 (14%)

Query: 728 GQRARSH-LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786
           GQRA S+ +      + ++ +     Q     +++++  E +KL+  + K K +L+V+DL
Sbjct: 50  GQRAVSYPIHFVTGAIGNIFNKDGSKQDK--NKIKQLEAENQKLETENKKYKKELDVKDL 107

Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
           S ++      ++                    +  + I++  G     K ++ ++ +E L
Sbjct: 108 SKYEPISTTVIARNP----------------DQWMNTIVIDKGSKSGIKNNMAVMTSEGL 151

Query: 847 LDRFNAVD 854
           + R   V+
Sbjct: 152 VGRVTKVN 159


>gi|162449977|ref|YP_001612344.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
 gi|161160559|emb|CAN91864.1| outer membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 274

 Score = 40.1 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 80/214 (37%), Gaps = 41/214 (19%)

Query: 712 SESSIRAGIRRIEAI---------TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
           SE  ++A +R IE +           ++A+S L     +++ L S LK +  ++      
Sbjct: 28  SEEEMQAKVREIEGLKTQLSAEQAQNKKAKSELDEAAARIEQLKSQLKAAGVDISNLNAN 87

Query: 763 IWEEYRKL--------QLIHAKRKLQLNVEDLSCHKIADVNFMS---HIISEVDSKELKS 811
           + ++ R L        QL   K++ ++  + L       ++       ++ ++    L  
Sbjct: 88  LEQQARALEDFRRRAQQLEDIKKRFEVLRDKLQALTKLGLSVTVRNNRMVIQLPGDVLFD 147

Query: 812 VM-DALQKKIQSGIIMLVGISKEK-----KASVLIVVTED---LLDRFN---------AV 853
              + L+K+ Q  ++ +  + +       ++  +   T++      RF          A 
Sbjct: 148 SGRETLKKEGQEILLKVAEVIRNDSGLSARSFQVAGHTDNAPLAGGRFKDNWGLSVMRAR 207

Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGG---PNGNK 884
           ++     +    GGGG +P    + G    +  K
Sbjct: 208 EVLAFLLQPEDKGGGGLKPERWSASGYGDTDPVK 241


>gi|47205359|emb|CAF96150.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1343

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768
            I  E+ ++    R+E    +   + L  +  KL+   S LK    ++   + ++ +E +
Sbjct: 859 KIQLEAKLKETTERLE--DEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKLTKEKK 916

Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVDS-----KELKSVMDALQKKIQS 822
            LQ  H +    L  E+   + +      +   + +++      K+L+  ++  ++K++ 
Sbjct: 917 ALQESHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEG 976

Query: 823 GI 824
            +
Sbjct: 977 DL 978


>gi|182626086|ref|ZP_02953847.1| peptidase, M23/M37 family protein [Clostridium perfringens D str.
           JGS1721]
 gi|177908607|gb|EDT71128.1| peptidase, M23/M37 family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 441

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K A++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQAEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|256079147|ref|XP_002575851.1| hypothetical protein [Schistosoma mansoni]
 gi|238661103|emb|CAZ32086.1| expressed protein [Schistosoma mansoni]
          Length = 1092

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           +SESS    + RIE    +     L      L++L + L+    N   +++ + E+ + +
Sbjct: 748 LSESSKSDTVSRIEH---EAVLRELEMSKSSLRALQTQLEEQTRNAREQIDSLMEDRKAI 804

Query: 771 QLI 773
           Q  
Sbjct: 805 QEE 807


>gi|253998233|ref|YP_003050296.1| isoleucyl-tRNA synthetase [Methylovorus sp. SIP3-4]
 gi|253984912|gb|ACT49769.1| isoleucyl-tRNA synthetase [Methylovorus sp. SIP3-4]
          Length = 935

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 40/181 (22%)

Query: 367 VLLDGVLSHLGKDEILNGDVAFKL--YDTHGLPLDIMQDILCARGLAGIDIISFNQA--- 421
            +L  ++    K + L+G  A  +  +D HGLP+++   ++  +    ID   F +    
Sbjct: 73  KILKDII---VKSKTLSGFDAPYVPGWDCHGLPIEL---MVEKQHGKNIDPARFRELCRE 126

Query: 422 -LEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +EQ  R +   + LG  G  +  + ++  K  A      D++R    + ++  +    
Sbjct: 127 YAKEQIERQKKDFIRLGVLGDWDHPYLTMDFKTEA------DIMRALGEIYQNGYLYQGS 180

Query: 480 PPIDLTNGVSSIVK------------AIVQQGEIVEEAV---------SGQKVEVVFDQT 518
            P+       S +             AI      V+ A           G+   V++  T
Sbjct: 181 KPVHWCVDCGSALAEAEVEYEDVNSPAIDVGFRFVDNAALSAVFDTPLDGEVYAVIWTTT 240

Query: 519 P 519
           P
Sbjct: 241 P 241


>gi|4887746|gb|AAD32282.1| putative unconventional myosin [Arabidopsis thaliana]
          Length = 1490

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           E  +     R+E    Q+A      +D K + +A      Q N+    E++ E Y  +  
Sbjct: 828 EKRVEELTWRLELEKNQKA----DLEDAKAQEIAKL----QNNLTELQEKLDEAYAAIIR 879

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
                KL +        ++  V+     +    + EL+  +  L+ KI+   +    +  
Sbjct: 880 DKEAAKLAIEQAPPIIKEVPVVDNTQLELLNSQNNELEVEVAKLKGKIKEFEVKCFALEN 939

Query: 833 EKKASVLIVVTEDLLDRFNAVD 854
           + +AS    VTE    +  AV+
Sbjct: 940 DSRAS----VTEAEDAKSKAVE 957


>gi|209964856|ref|YP_002297771.1| ABC transporter, ATP-binding protein, putative [Rhodospirillum
           centenum SW]
 gi|209958322|gb|ACI98958.1| ABC transporter, ATP-binding protein, putative [Rhodospirillum
           centenum SW]
          Length = 633

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+ G+ AR        +L++  + L+     V  R+  + E   KL++  A  KL     
Sbjct: 534 ALRGRDARKEERRAAAELRAQLAPLRRKVDEVEKRLARLTERRNKLEMQLADPKLYEGPA 593

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
           D       +   +  ++ EVDS EL+ +   L ++++     
Sbjct: 594 DKVSKLQIE---LGTVVKEVDSAELEWL--DLSEQLEQAQAA 630


>gi|124010480|ref|ZP_01695117.1| fibronectin type III domain protein [Microscilla marina ATCC 23134]
 gi|123982361|gb|EAY23903.1| fibronectin type III domain protein [Microscilla marina ATCC 23134]
          Length = 709

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 118/350 (33%), Gaps = 47/350 (13%)

Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586
           ++GD    +       + +V+    G F   A       +    +    D   R +++ +
Sbjct: 346 RVGDK--IMAADFEFTLVEVKPLGGGWFAGRAYTHINYFQ-GARVFARFD---RIKINTD 399

Query: 587 HSATHLLHHALSTILGSHVSQN-GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645
                        I G   +   G+ I PD  R          +     IE  ++ I   
Sbjct: 400 K----------RLIDGELTTDGAGTQIIPDEWRDQYLSFTGEINNLFDEIERGLDKIDQV 449

Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705
              +   +   E  + +      G    + +  + +  +       A+  G         
Sbjct: 450 VGKIDQVLKKVEQWVKNYN----GPDKAELLETIQIGKKAIEDGKEAIDKG------KVT 499

Query: 706 MLLYIVSESSIRAGIRRIEAIT---GQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVE 761
             L  + + S +     I+A T   G R +       + +K +   LK  S+ N+    +
Sbjct: 500 EGLKTLKDGSGKV----IKAATKIIGNRLQKLFASLKDIIKEIVQELKGKSRQNIAQNKK 555

Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           E   E ++LQ +  K K       L+  K  +   +++I       E+    +  +K++ 
Sbjct: 556 EQATENKRLQEVVQKAKEDRAAMKLTQAKPDNEGVLTYIPIYEQPAEVAVPEEEWKKRLN 615

Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871
           +G    +   ++ +  ++  V +  ++RF    LA++         GGG+
Sbjct: 616 NGS---LEKWRKTRKKLVSTVVKLEIERFKFDTLAKM---------GGGQ 653


>gi|297739325|emb|CBI28976.3| unnamed protein product [Vitis vinifera]
          Length = 223

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              S  +    +L+S A  LK S G++  +++E+  E  +L+    + K +    +    
Sbjct: 101 AILSDAVRMVTQLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVK 160

Query: 790 KI 791
            I
Sbjct: 161 AI 162


>gi|225447370|ref|XP_002274829.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 244

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              S  +    +L+S A  LK S G++  +++E+  E  +L+    + K +    +    
Sbjct: 122 AILSDAVRMVTQLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVK 181

Query: 790 KI 791
            I
Sbjct: 182 AI 183


>gi|42569537|ref|NP_180749.2| XIF; motor [Arabidopsis thaliana]
 gi|330253507|gb|AEC08601.1| myosin-like protein XIF [Arabidopsis thaliana]
          Length = 1556

 Score = 40.1 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 713  ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
            E  +     R+E    Q+A      +D K + +A      Q N+    E++ E Y  +  
Sbjct: 894  EKRVEELTWRLELEKNQKA----DLEDAKAQEIAKL----QNNLTELQEKLDEAYAAIIR 945

Query: 773  IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
                 KL +        ++  V+     +    + EL+  +  L+ KI+   +    +  
Sbjct: 946  DKEAAKLAIEQAPPIIKEVPVVDNTQLELLNSQNNELEVEVAKLKGKIKEFEVKCFALEN 1005

Query: 833  EKKASVLIVVTEDLLDRFNAVD 854
            + +AS    VTE    +  AV+
Sbjct: 1006 DSRAS----VTEAEDAKSKAVE 1023


>gi|167645362|ref|YP_001683025.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
 gi|167347792|gb|ABZ70527.1| alanyl-tRNA synthetase [Caulobacter sp. K31]
          Length = 36

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           +GG G GG+   A+ G P+  KA   +  V + L
Sbjct: 1   MGGQGAGGKADFARGGAPDATKAQAGLGAVKAAL 34


>gi|313246933|emb|CBY35782.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVND 641
           +  HS+ H+L   +    G  +   G  I  DG  +D+       S+E  +  +E     
Sbjct: 209 TYWHSSAHILGECMERYFGGALCY-GPDI-EDGFYYDMWMGNTTISSEADMPKLEKLYYQ 266

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           ++ +  P     + ++  I          +      +        G     +C G H+  
Sbjct: 267 MMKEKQPFQRLNVTKQQLIDMFKHNPFKQRLIAEKNIGDTTVYKCGNLID-MCRGPHLPH 325

Query: 702 TGEIMLLYIVSESS 715
           TG+     +   S+
Sbjct: 326 TGKAKACKLYKTSA 339


>gi|46275221|emb|CAG25712.1| putative alanyl tRNA synthetase [Candida parapsilosis]
          Length = 143

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 738 QDEKLKSLASFLKVSQGNVVGRVE----------EIWEEYRKLQLIHAKRKLQLNVEDLS 787
           ++ K+K L   LK    +V+ + +           I +  + +Q   +K+ L +  + L 
Sbjct: 17  KENKVKELGVALKKLSISVLDKQKLTEKFNKVDKSIKDHQKSIQKEESKKTLDVVKKWLD 76

Query: 788 CHKIADVN--FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                + +   ++HI    ++K +    + ++K+ ++  + L+    +K A    V  E 
Sbjct: 77  EGDDNNKSEFLVAHIPINANAKAITEAFNLVKKQDKTKSLYLLTGQNDKVAHGCYVSDEA 136

Query: 846 LLDRFNA 852
           +    +A
Sbjct: 137 IAKGVDA 143


>gi|16125112|ref|NP_419676.1| sugar ABC transporter periplasmic sugar-binding protein
           [Caulobacter crescentus CB15]
 gi|221233839|ref|YP_002516275.1| inositol ABC transporter, periplasmic inositol-binding protein IbpA
           [Caulobacter crescentus NA1000]
 gi|13422118|gb|AAK22844.1| sugar ABC transporter, periplasmic sugar-binding protein
           [Caulobacter crescentus CB15]
 gi|220963011|gb|ACL94367.1| inositol ABC transporter, periplasmic inositol-binding protein IbpA
           [Caulobacter crescentus NA1000]
          Length = 326

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 761 EEIWEEYRKL----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816
            E+ +E  KL    Q++ A+      + DL    +     +  I++  DSK L    D L
Sbjct: 57  RELEDEAAKLGVKVQVLDAQNNSSKQISDLQAAAVQGAKVV--IVAPTDSKALAGAADDL 114

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
            ++    +I +       K +V  V  +++       D  
Sbjct: 115 VEQGV-AVISVDRNIAGGKTAVPHVGADNVAGGRAMADWV 153


>gi|256810817|ref|YP_003128186.1| chromosome segregation protein SMC [Methanocaldococcus fervens
           AG86]
 gi|256794017|gb|ACV24686.1| chromosome segregation protein SMC [Methanocaldococcus fervens
           AG86]
          Length = 1169

 Score = 40.1 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 34/232 (14%)

Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT-S 629
           +V  ID                L   +  I  S V   G+  +   ++ DV  SK    +
Sbjct: 625 VVENIDIAKELAKKYRKVRFVTLDGDV--IEPSGVMVGGTFKSRAKIKVDVDLSKLNRIA 682

Query: 630 AELKSIE----------DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679
            E+ +IE          + +N+II ++      I N  + I             + +++ 
Sbjct: 683 DEIIAIEGELRNIKEEIERLNEIIRKSSAKKMEIENTLEIIKKNEMRRREIVEKNNIKIK 742

Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739
            +E ++  +               E+  L I  E  I   I  IE     +    +  ++
Sbjct: 743 ELELKNKEI-------------LDELEELKINKEE-ILDKINEIE----SKINELIEKRE 784

Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
             +K L  +        + R+ EI +E + L+   AK K +++       +I
Sbjct: 785 RIMKELKEY---ESDENLKRMNEIEDELKILEKEKAKLKNEIDKGLTLVKEI 833


>gi|313235460|emb|CBY19737.1| unnamed protein product [Oikopleura dioica]
          Length = 800

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVND 641
           +  HS+ H+L   +    G  +   G  I  DG  +D+       S+E  +  +E     
Sbjct: 209 TYWHSSAHILGECMERYFGGALCY-GPDI-EDGFYYDMWMGNTTISSEADMPKLEKLYYQ 266

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           ++ +  P     + ++  I          +      +        G     +C G H+  
Sbjct: 267 MMKEKQPFQRLNVTKQQLIDMFKHNPFKQRLIAEKNIGDTTVYKCGNLID-MCRGPHLPH 325

Query: 702 TGEIMLLYIVSESS 715
           TG+     +   S+
Sbjct: 326 TGKAKACKLYKTSA 339


>gi|313200306|ref|YP_004038964.1| isoleucyl-tRNA synthetase [Methylovorus sp. MP688]
 gi|312439622|gb|ADQ83728.1| isoleucyl-tRNA synthetase [Methylovorus sp. MP688]
          Length = 935

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 40/181 (22%)

Query: 367 VLLDGVLSHLGKDEILNGDVAFKL--YDTHGLPLDIMQDILCARGLAGIDIISFNQA--- 421
            +L  ++    K + L+G  A  +  +D HGLP+++   ++  +    ID   F +    
Sbjct: 73  KILKDII---VKSKTLSGFDAPYVPGWDCHGLPIEL---MVEKQHGKNIDPARFRELCRE 126

Query: 422 -LEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479
             +EQ  R +   + LG  G  +  + ++  K  A      D++R    + ++  +    
Sbjct: 127 YAKEQIERQKKDFIRLGVLGDWDHPYLTMDFKTEA------DIMRALGEIYQNGYLYQGS 180

Query: 480 PPIDLTNGVSSIVK------------AIVQQGEIVEEAV---------SGQKVEVVFDQT 518
            P+       S +             AI      V+ A           G    V++  T
Sbjct: 181 KPVHWCVDCGSALAEAEVEYEDVNSPAIDVGFRFVDNAALSAVFDTPLDGDVYAVIWTTT 240

Query: 519 P 519
           P
Sbjct: 241 P 241


>gi|294614153|ref|ZP_06694074.1| periplasmic serine protease [Enterococcus faecium E1636]
 gi|291593003|gb|EFF24591.1| periplasmic serine protease [Enterococcus faecium E1636]
          Length = 341

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA--FKLYDTHG 395
           PE  + + +++  + S  +RF + +  G    +  +  +    I +G  A    L D  G
Sbjct: 207 PETKEEEAVLQAYIDSAYQRFVRIVSEGRNKSEEAVKKIADGRIYDGVQAKEVGLVDELG 266

Query: 396 LPLDIMQDILCARGLAGIDIISFNQA 421
            P D +Q +   + L   +++ ++ A
Sbjct: 267 FPEDALQAMRKEQKLEDAELVEYSSA 292


>gi|291389910|ref|XP_002711459.1| PREDICTED: myosin heavy chain [Oryctolagus cuniculus]
          Length = 1962

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + + +++  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLED-EARTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    K L  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLEHERGELANEV-KALQQGKG 1241


>gi|288870762|ref|ZP_06115199.2| phage scaffold protein [Clostridium hathewayi DSM 13479]
 gi|288866009|gb|EFC98307.1| phage scaffold protein [Clostridium hathewayi DSM 13479]
          Length = 211

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 2/135 (1%)

Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-EYRKLQLIHAKRKL 779
           RR++   G          D+KL       K+++      + +  E E +  +    +R+L
Sbjct: 72  RRVQKALGTAKEKWTALMDDKLSEADKLAKMNKEEKAEYLRQKQEKELKDREAAITRREL 131

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839
               ++    K   V  ++ +++  D+      M A++K  Q  +   V    +    + 
Sbjct: 132 MAEAKNTLAEKKLPV-GLAEVLNYADADSCNKSMAAVEKAFQEAVQAAVEEKLKGGEPLK 190

Query: 840 IVVTEDLLDRFNAVD 854
              +ED  D    V+
Sbjct: 191 KAPSEDGKDLAKQVE 205


>gi|149057086|gb|EDM08409.1| threonyl-tRNA synthetase-like 2, isoform CRA_b [Rattus norvegicus]
          Length = 708

 Score = 40.1 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSVEYED 685
           EL ++E+    II +  P     ++++  +           +L  K +     V   Y  
Sbjct: 183 ELSALENICKTIIKEKQPFERLEVSKDSLLEMFKYNKFKCRILKEKVDTPTTTV---YRC 239

Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715
           G +    LC G HV  TG+I  + I   SS
Sbjct: 240 GPLID--LCKGPHVRHTGKIKAIKIFKNSS 267


>gi|124504771|ref|XP_001351128.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|74873273|sp|O97237|YGCC1_PLAF7 RecName: Full=GRIP and coiled-coil domain-containing protein
           PFC0235w
 gi|15375376|emb|CAB39003.2| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1139

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-QLNVEDLSCHKI 791
           S +  + ++LK++   LK +   +   +  +  E +K++  +   K+ +     ++  K+
Sbjct: 591 SDVQKEKKELKTINEVLKNTNEKLEKEITSLLGEMKKIEEENKVLKIFKEEKNKINNEKV 650

Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
             +     I  + D K  + ++D    K  + +++      E+       + +D
Sbjct: 651 TQIKG-DDINDDNDMKFKQILLD---NKTFNKLLVNELNIVEENILFCFSIDKD 700


>gi|325103307|ref|YP_004272961.1| SMC domain protein [Pedobacter saltans DSM 12145]
 gi|324972155|gb|ADY51139.1| SMC domain protein [Pedobacter saltans DSM 12145]
          Length = 1023

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 61/470 (12%), Positives = 152/470 (32%), Gaps = 83/470 (17%)

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK-DEILNGDVAFKLYDTHGLP 397
           EL Q     +  L  ++    K  ++    ++ + + + K ++ L           +GL 
Sbjct: 363 ELQQRIAKGQAILDDKEGEKLKLSEQ----VEQLAAEIKKRNQELP---------DYGLL 409

Query: 398 LDIMQDILCARGLAG---IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
             + Q  L  R L     +D   + +A    + + + ++  L   + E +  + + K G 
Sbjct: 410 SQLRQWYLTNRHLKNTLLLDEQDYEKA----KQKVQENTKLLDEISFESVLINNEIKSGV 465

Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514
           +  +  DLL      +++         +             ++ GE       G    + 
Sbjct: 466 SLKLIRDLLENVALEEQNASAKLTHYQLQ------------LKLGEFSSHLHLGNACPLC 513

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
                      G L        + ++L+   +QK  E + +    ++  +L+   SL L+
Sbjct: 514 -----------GSLEHPQILQAEDVQLEFESIQKDIEALKIKKKTLDGLLLKV-SSLELS 561

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ++     +        + L  AL           G     +    ++  +       + +
Sbjct: 562 LEKSREIEEKALQKQKNSL-AALQE-HQKSFVWGGFKPDDEAKLDELEQNAKKEKEYITA 619

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           +E+++    A    V   ++  + A+       L   Y ++   VS+  +          
Sbjct: 620 LENSLEQKRASAKEVEGVLLKYKTALDK-----LQLDYREKSGQVSLLKQQIQEQ----- 669

Query: 695 GGTHVS-----STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749
              H+S     S  E+    ++ E  I                  +    ++LK      
Sbjct: 670 ---HLSVLSQFSLEELQAEKLLLEQRIA----------------DVQQNHDQLKLEIEAF 710

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLI--HAKRKLQLNVEDLSCHKIADVNFM 797
                ++  R+  + E  R L+    H ++  ++ +++     + +V  +
Sbjct: 711 NNQIISLKERINALEERRRTLEKEYLHLEQAFEVKLKESGFGTLEEVRVI 760


>gi|238490834|ref|XP_002376654.1| brain chitinase and chia, putative [Aspergillus flavus NRRL3357]
 gi|220697067|gb|EED53408.1| brain chitinase and chia, putative [Aspergillus flavus NRRL3357]
          Length = 254

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 19/210 (9%)

Query: 394 HGLP-LDIMQDI--LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FS 447
           +G   +DI  +      RG    D  +F + L+E R   +   +   +      +   + 
Sbjct: 22  YGFDGVDIDWEYPGAEERGGRPTDKENFTKLLQEIRQEFQTKYVLTFAAPLASYYLRNYD 81

Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV-EEAV 506
           LK       +I           + D+K        D+  GV + ++A V   ++V   A 
Sbjct: 82  LKRASEIVDWINVMAYDIHGTWESDKKAAGHTNLTDVNKGVENYLQAGVAPNKLVLGTAF 141

Query: 507 SGQKVEVVF-----DQTPFY-AEAGGQ-LGDTGCAIGDGIRLQITDVQKKAE---GIFVH 556
            G+ V++          PF    A GQ +   G      I+  I+   K      G   H
Sbjct: 142 YGRSVKLASGGCTQPGCPFIGPGAEGQCVKTAGYLSYTEIQDIISGGAKPVFDQAGSVQH 201

Query: 557 HAIVERGILRTEM--SLVLTIDYQNRRQLS 584
                   +  +   ++ + +DY  R+ L 
Sbjct: 202 LTWGGDNWVSYDDPQTIKIKVDYARRKGLR 231


>gi|296199230|ref|XP_002746996.1| PREDICTED: laminin subunit alpha-2 isoform 2 [Callithrix jacchus]
          Length = 3118

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 82/259 (31%), Gaps = 39/259 (15%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E   A G       L G        +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEGLLKKVKKLFGESRGKNEAMEKDLREKLAD 1778

Query: 689  HSSALCGGT--------------HVSSTGEIMLLYI-VSESSIRAGIRRIE--AITGQRA 731
            + + +                  H+S+  +  +  +   + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANHLSAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                    +++ S+  +++  Q  +    EE+ ++   L      RKL   V     H  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELKDKIDDLSQEIKDRKLAEKVSQAESH-- 1896

Query: 792  ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                  +  +++  S  L  ++   +    +        S  K          D  ++  
Sbjct: 1897 ------AAQLND-SSAVLDGILAEAKNISFNATAAFNAYSNIKDNI-------DEAEKVA 1942

Query: 852  --AVDLARLSAKVLGGGGG 868
              A DLA  + K+  G  G
Sbjct: 1943 REAKDLANEATKLATGPRG 1961


>gi|296199228|ref|XP_002746995.1| PREDICTED: laminin subunit alpha-2 isoform 1 [Callithrix jacchus]
          Length = 3122

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 82/259 (31%), Gaps = 39/259 (15%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNREDAIASGA----AALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E   A G       L G        +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEGLLKKVKKLFGESRGKNEAMEKDLREKLAD 1778

Query: 689  HSSALCGGT--------------HVSSTGEIMLLYI-VSESSIRAGIRRIE--AITGQRA 731
            + + +                  H+S+  +  +  +   + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANHLSAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                    +++ S+  +++  Q  +    EE+ ++   L      RKL   V     H  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELKDKIDDLSQEIKDRKLAEKVSQAESH-- 1896

Query: 792  ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851
                  +  +++  S  L  ++   +    +        S  K          D  ++  
Sbjct: 1897 ------AAQLND-SSAVLDGILAEAKNISFNATAAFNAYSNIKDNI-------DEAEKVA 1942

Query: 852  --AVDLARLSAKVLGGGGG 868
              A DLA  + K+  G  G
Sbjct: 1943 REAKDLANEATKLATGPRG 1961


>gi|159122290|gb|EDP47412.1| vesicle-mediated transport protein (Imh1), putative [Aspergillus
           fumigatus A1163]
          Length = 1001

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 729 QRARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              ++ L   +  +      A  LK         +E++ ++  + +    +++LQ  +E+
Sbjct: 196 DDVKAKLAESENTIAKAGEEAEKLKAELKQKTEEIEKLQDQVTQQKDNDQQKELQEKLEE 255

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           ++  K A    +           L+ ++D L+ +++   +++  +  + K  V
Sbjct: 256 VAKEKDASEKKLGV---------LQGLVDNLRSQLKDTEVVVSDLKADMKGKV 299


>gi|70981913|ref|XP_746485.1| vesicle-mediated transport protein (Imh1) [Aspergillus fumigatus
           Af293]
 gi|66844108|gb|EAL84447.1| vesicle-mediated transport protein (Imh1), putative [Aspergillus
           fumigatus Af293]
          Length = 1001

 Score = 39.7 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 729 QRARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              ++ L   +  +      A  LK         +E++ ++  + +    +++LQ  +E+
Sbjct: 196 DDVKAKLAESENTIAKAGEEAEKLKAELKQKTEEIEKLQDQVTQQKDNDQQKELQEKLEE 255

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
           ++  K A    +           L+ ++D L+ +++   +++  +  + K  V
Sbjct: 256 VAKEKDASEKKLGV---------LQGLVDNLRSQLKDTEVVVSDLKADMKGKV 299


>gi|47847498|dbj|BAD21421.1| mFLJ00279 protein [Mus musculus]
          Length = 1335

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 712 SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
            E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 456 KEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEE 515

Query: 767 YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              L+             ++L   +  +V+ +   + + ++K  ++ +  +++K    + 
Sbjct: 516 LEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQEMRQKHSQAVE 574

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L    ++ K     +            +LA     +L G G
Sbjct: 575 ELADQLEQTKRVKATLEKAKQTLENERGELANEVKALLQGKG 616


>gi|134297920|ref|YP_001111416.1| phosphoribulokinase/uridine kinase [Desulfotomaculum reducens MI-1]
 gi|134050620|gb|ABO48591.1| phosphoribulokinase/uridine kinase [Desulfotomaculum reducens MI-1]
          Length = 554

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 100/291 (34%), Gaps = 50/291 (17%)

Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI-LGSHVSQNGSCITP 614
            H       +   + +        R       S T LL  A+S I  GS+     S    
Sbjct: 56  CHVRFVDLTMPEGVRVY------RR-------SVTALLMRAISEILPGSNAVIQHSL--G 100

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK--- 671
           +G+  ++ + +P+   ++  IE  ++ II  + P V   + +EDA      A    K   
Sbjct: 101 NGIYGEIHYDRPLKDKDIARIERQMHYIIEADEPWVLMNLKKEDAERLLTEAGQTEKIQL 160

Query: 672 --YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729
             Y  +  +    Y  GG +   LC G  V STG +                R+      
Sbjct: 161 LHYLPKEEIEL--YSCGGYYD--LCHGALVPSTGILKNF-------------RLRF---- 199

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
               +L G   +L +L S  K+      G++  I  E +K        K+   V      
Sbjct: 200 ----YLPGFILELPNLESPSKIPPYIEQGKLANIHFEAKK---WANILKVNNVVSLNDVV 252

Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVGISKEKKASVL 839
              DV  +  +      K++  + D +   I    I+++ G S   K S  
Sbjct: 253 TKGDVGNLIRVSEAFHEKKIGEIADQISDNIDRIRIVLIAGPSSSGKTSFA 303


>gi|126339824|ref|XP_001376000.1| PREDICTED: similar to myosin, heavy chain 9, non-muscle [Monodelphis
            domestica]
          Length = 1960

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 17/167 (10%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + + ++K  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLDD-EAKTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNA-----VDLARLSAKVLGGGG 867
             L    ++ K      V  +L     A      +L+     +L G G
Sbjct: 1200 ELAEQLEQTKR-----VKANLEKAKQALESERAELSNEVKALLQGKG 1241


>gi|301106224|ref|XP_002902195.1| nitric oxide synthase-interacting protein, putative [Phytophthora
           infestans T30-4]
 gi|262098815|gb|EEY56867.1| nitric oxide synthase-interacting protein, putative [Phytophthora
           infestans T30-4]
          Length = 289

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 30/205 (14%)

Query: 685 DGGVHSSALC-GGTHVSS-TGEIMLLYIVSE--------------SSIRAGIRRIEAITG 728
                   LC   TH  S            E               ++ A  R +E    
Sbjct: 36  QLSFGVCCLCLATTHSRSPLVSPGGFVYCKECIYSNLLAQKRSIQENVAAYERFMETQDR 95

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++    L  + E L+     L  ++G + G+     ++ R L     K K+    +D   
Sbjct: 96  KQQDEVLQKERETLQKA---LDAAEGAISGKATRTLDQARALATQKLKEKVDRATDDDKR 152

Query: 789 HKIADVNFMS--------HIISEVDSKELKSV-MDALQKKIQSGIIMLV-GISKEKKASV 838
             +   +F            + + D+K    + +D ++ K    +       + + K  V
Sbjct: 153 EAMKKTSFWIPDCTPTQETKVDKPDTKTRDPMSLDEMKLKHLMPVKFEWDTSAADGKPKV 212

Query: 839 LIVVTEDLLDRFNAVDLARLSAKVL 863
           L  VT+  +    AV L R S +V+
Sbjct: 213 LCAVTKKEISHHRAV-LLRPSGQVI 236


>gi|160425231|ref|NP_001104237.1| myosin-9 [Canis lupus familiaris]
 gi|122135145|sp|Q258K2|MYH9_CANFA RecName: Full=Myosin-9; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a;
            Short=NMMHC-IIA
 gi|89994139|emb|CAJ31056.1| myosin, heavy polypeptide 9, non-muscle [Canis lupus familiaris]
          Length = 1960

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 8/163 (4%)

Query: 712  SESSIRAGIRRIE--AITGQRARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E  A     A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEATQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +VN +   + E +++  ++ +  +++K    + 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE-EARTHEAQIQEMRQKHSQAVE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
             L    ++ K     +            +LA    KVL  G G
Sbjct: 1200 ELAEQLEQTKRVKANLEKAKQTLENERGELANEV-KVLQQGKG 1241


>gi|315452409|ref|YP_004072679.1| hypothetical protein Hfelis_00010 [Helicobacter felis ATCC 49179]
 gi|315131461|emb|CBY82087.1| hypothetical protein HFELIS_00010 [Helicobacter felis ATCC 49179]
          Length = 638

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN--VEDLSCHKIA 792
           L  +D+ L+ +A  LK  +  V     ++ +  + L+ +  + K +     ++L   +  
Sbjct: 366 LKEKDKTLEKVAQELKAKERQVQEHARDLADSNKALEKLTQELKAKDTEHTKELEALQTQ 425

Query: 793 DVNFMSHIISEVDSK-ELKSVMDALQKKIQSGIIMLVGISKEK 834
               +    +E+D   +L+  +  ++  +Q  +  ++    EK
Sbjct: 426 HAKELEKARNEIDKDTKLQGYVGKVKDLLQKFVDQVINPMLEK 468


>gi|310658401|ref|YP_003936122.1| phosphoribulokinase/uridine kinase [Clostridium sticklandii DSM
           519]
 gi|308825179|emb|CBH21217.1| Phosphoribulokinase/uridine kinase [Clostridium sticklandii]
          Length = 554

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           D   RR      S T L   AL  +L   V++    ++ +G   +V + + +   +++ I
Sbjct: 66  DPDGRRTYMR--SLTFLFIRALEELLPGAVTKIQHSLS-NGFFCEVEYEEKLNVDDVQKI 122

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASG 663
           E  + + +  N  ++   + +E+AI   
Sbjct: 123 ELRMREFVDSNEKIIRFRVPKEEAINIY 150


>gi|123438677|ref|XP_001310118.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
 gi|121891874|gb|EAX97188.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
          Length = 3977

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH 789
               L    +++K     L     ++  ++EE+ EE  K   +     ++LQ  ++ L+  
Sbjct: 926  LEELQTSIDQMKQTNENLNKENKDLQNKIEELLEENDKANNENESKNKELQQIIDQLAEE 985

Query: 790  KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            K++  N      SE ++K+ + ++D L  + +     L   + E+K  +
Sbjct: 986  KLSLQN--KFEESEKNAKDNQKIIDELIAENEK----LTSSNNEEKVEL 1028


>gi|112253526|gb|ABI14350.1| unknown [Pfiesteria piscicida]
          Length = 659

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 17/110 (15%)

Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA-SFLKVSQGNV 756
           H+++T       + +E S+ A   RI+      A   L    E          K      
Sbjct: 34  HLANT-------VSNEESVAA---RIKF-----AMEDLKKARETGDEAKVKEAKAEVEKA 78

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI-ADVNFMSHIISEVD 805
              VE+   E ++ +    K ++++   +    K  A++      + + +
Sbjct: 79  KAEVEKAKAEIKEAEAKVEKAEVKVKEAEAKVEKAKAEIKEAEAKVEKAE 128


>gi|294499871|ref|YP_003563571.1| AcrB/AcrD/AcrF family transporter [Bacillus megaterium QM B1551]
 gi|294349808|gb|ADE70137.1| transporter, AcrB/AcrD/AcrF family [Bacillus megaterium QM B1551]
          Length = 1012

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 59/211 (27%)

Query: 710 IVSESSIRAGIRRIEAITG--------------------QRARSHLMG---QDEKLKSLA 746
           I  E S +A +   EA TG                    Q+A   +     +D++LK + 
Sbjct: 626 ITKEESPKATVNVQEASTGGPPTNNNVTVDLYSSNLNDLQKAAKQVENHLNKDKRLKYVT 685

Query: 747 SFLKVSQGNVVGRVE------------EIW----EEYR-----KLQLIHAKRKLQLNVED 785
           +     Q  +V  V+            ++     ++ +      L+L + KR +QL+  D
Sbjct: 686 NNFSDKQKQLVVEVDPDKAAEYGVSGFQLLGTISDQTKPVSVGDLKLDNTKRAVQLS-YD 744

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMD--------ALQKKIQSGIIMLVGISKEKKAS 837
                + ++  +  + +E     +K + D        ++QK       +   +  + K  
Sbjct: 745 KDLSSVKEIKDL-QVFTERGPVLVKDIADVRTIDTFTSIQKLDGK---VFARVEADIKGD 800

Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868
            +  VT+D++D    +DL +  +  L GGGG
Sbjct: 801 DVQAVTKDVVDGVKKLDLPKDVS--LDGGGG 829


>gi|268573180|ref|XP_002641567.1| Hypothetical protein CBG09866 [Caenorhabditis briggsae]
          Length = 1130

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 88/258 (34%), Gaps = 30/258 (11%)

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA---LLGTK 671
           + +R +    + I S     +    ND++ Q   V    M+ ++  +    A       K
Sbjct: 729 EKMRVEFIAKEKIISDLRAELAAINNDLVVQKAKVEKSKMDMDELESKEKRAASDRENEK 788

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731
             + +R+     ++     SAL              L   +E  I     + E      A
Sbjct: 789 -QEEIRLRETFAKELETMGSALEAK-----ETAYNELKQRAEKKIAKLNAQFEEKLKAEA 842

Query: 732 RSHLMGQ-------DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
              +  Q       + ++K L +  + S+  +  R+  + E  + +Q  +   KL+    
Sbjct: 843 EKLVNAQKNQDEASESRIKELEASSEQSKLELEQRLRSLEESLKSIQSENDALKLKEEAA 902

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           +    +         ++   ++KEL   ++ L+ +++      + ++ E K         
Sbjct: 903 E---KEKGHWEVEKEMLEG-EAKELAEKIEGLESEVKR-----LTVANESK-----AAKA 948

Query: 845 DLLDRFNAVDLARLSAKV 862
           D   R    +L +   ++
Sbjct: 949 DTDSRKVVRELQKEVKQL 966


>gi|289651391|ref|ZP_06482734.1| clpB protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 854

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV-VGRVEEIWEEYRKLQLIHAKRKLQ 780
           R+E  +       L  +  +LK  A  LK  +    + R+E++ EE  +L+  +A     
Sbjct: 402 RMEIDSKPEVLDRLERRLIQLKVEAQALKKEKDEAAIKRLEKLQEEVVRLEKEYA----- 456

Query: 781 LNVEDLSCHKIADVNFMSHIISEVD 805
            ++E++   + A+V   +HI  +++
Sbjct: 457 -DLEEIWTSEKAEVTGSAHIQQKIE 480


>gi|224100885|ref|XP_002312052.1| predicted protein [Populus trichocarpa]
 gi|222851872|gb|EEE89419.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score = 39.7 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 735 LMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHK 790
           ++  +E   +L   +K  ++  +  RVE++ +E  +L+   A ++ Q N      +   +
Sbjct: 599 MLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRRALADKQEQENAMLQVLMRVEQ 658

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
              V   + I +E D+   +     LQ+K +  I  L  + K
Sbjct: 659 DQKVTEDARIYAEQDAAAQRYAAQVLQEKYEQAIASLAEMEK 700


>gi|2415553|emb|CAA04302.1| threonyl-tRNA synthetase [Campylobacter jejuni]
          Length = 87

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
            HL+  A+ ++        G  I  DG  +D      I    L  IE  + ++    + +
Sbjct: 1   AHLMAQAIKSLYPEAKFFVGPVI-EDGFYYDFRVESKIGEKNLVKIEKKMKELAEAKIEI 59

Query: 650 VTRIMNREDAIASG 663
               + + +A+A  
Sbjct: 60  SKYEITKSEALAKF 73


>gi|309389187|gb|ADO77067.1| chromosome segregation protein SMC [Halanaerobium praevalens DSM
           2228]
          Length = 1205

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 16/191 (8%)

Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664
            +Q+ S      L  ++  +K    A+L+ IE+  N+I      +               
Sbjct: 756 TAQDSSQNDFAKLNNNLKDNKKSMQAKLREIENLKNEIQNLESEIEALEKKLNKKKNELN 815

Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724
                 K  +       E  +                  E   +       IRA    IE
Sbjct: 816 NLEPRLKELELNAARISEKRNNAQEQVL-----------EKEKIVTAKTKEIRAKQAEIE 864

Query: 725 AITGQ-----RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
            I        + +  L  +   L+  A  L++S+ N+  +V+E+ +E    +    K + 
Sbjct: 865 TINNDLEKIAKRKLKLKEKQNDLEQAAEKLEISKKNLTKKVKELEKEVEIKEKQAKKLQD 924

Query: 780 QLNVEDLSCHK 790
           +LN    + H+
Sbjct: 925 KLNQTKDTFHQ 935


>gi|218199794|gb|EEC82221.1| hypothetical protein OsI_26369 [Oryza sativa Indica Group]
          Length = 256

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            +  +    +L+S A  LK S  ++  +++E+  E  +L+    K K +  
Sbjct: 133 LNDAIRVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKE 183


>gi|115472613|ref|NP_001059905.1| Os07g0543000 [Oryza sativa Japonica Group]
 gi|32352190|dbj|BAC78588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|34395240|dbj|BAC83769.1| putative bHLH protein [Oryza sativa Japonica Group]
 gi|109287753|dbj|BAE96297.1| bHLH-HALZ myc like protein [Oryza sativa Japonica Group]
 gi|113611441|dbj|BAF21819.1| Os07g0543000 [Oryza sativa Japonica Group]
 gi|194396121|gb|ACF60478.1| bHLH transcription factor [Oryza sativa Japonica Group]
 gi|215765132|dbj|BAG86829.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637220|gb|EEE67352.1| hypothetical protein OsJ_24621 [Oryza sativa Japonica Group]
          Length = 256

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
            +  +    +L+S A  LK S  ++  +++E+  E  +L+    K K +  
Sbjct: 133 LNDAIRVMAELRSEAQKLKESNESLQEKIKELKAEKNELRDEKQKLKAEKE 183


>gi|221120547|ref|XP_002165606.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 7746

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 97/247 (39%), Gaps = 23/247 (9%)

Query: 613  TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
              + LR     ++ +  AE ++ +  +    A+ L +         A      + +  K 
Sbjct: 5158 EAEKLRLAEEEAEKVRIAEEEAEKVRIAAEEAEKLHISEETEKMSSAAEEAEKSHIAEKE 5217

Query: 673  NDRVRVVSVEYEDGGVHSSAL---------CGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723
             +++R+ + E E   + +                H+++  E   L I +E + +  + + 
Sbjct: 5218 AEKLRIATEEAEKLCIAAEEAEKLRLAEEEAEKVHIAAE-EAEKLRIAAEEAEKLRLAKK 5276

Query: 724  EA----ITGQRARSHLMGQDEKLK-----SLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774
            EA    I  + A    + ++E  K       A  L+++   V  +V    EE  KL+L  
Sbjct: 5277 EAEKVRIAEEEAEKLRLTEEEAEKVRIAAEEAEKLRIAAEEV-EKVHIAEEEAEKLRLAE 5335

Query: 775  AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDALQKKIQSGIIMLVGISK 832
               KL++  E+    ++A+       I+E +++ L+    ++ ++   +    + +   +
Sbjct: 5336 EAEKLRIAAEEAEKLRLAE-EAEKVCIAEEETENLRIATEVEKVRIAEEEAENLRIATKE 5394

Query: 833  EKKASVL 839
            ++K  + 
Sbjct: 5395 DEKLGIA 5401


>gi|217966477|ref|YP_002351983.1| phosphoribulokinase/uridine kinase [Dictyoglomus turgidum DSM 6724]
 gi|217335576|gb|ACK41369.1| phosphoribulokinase/uridine kinase [Dictyoglomus turgidum DSM 6724]
          Length = 555

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 592 LLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
           LL+ A+S ++    V    S       RF     K     +++ I++ + +I+ QN+P+ 
Sbjct: 84  LLNFAVSLVMPDQRVLVEHSYHKSLYGRFRNYAPKA---EDIERIKERMMEIVEQNIPIQ 140

Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683
            +++++E+A+          + N+  ++  ++Y
Sbjct: 141 KKLVSKEEALKIF------EERNEEDKIRLIKY 167


>gi|189219439|ref|YP_001940080.1| TPR repeats containing protein [Methylacidiphilum infernorum V4]
 gi|189186297|gb|ACD83482.1| TPR repeats containing protein [Methylacidiphilum infernorum V4]
          Length = 460

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD------VQKKA 550
           ++  ++E +  G K E V  + PFY   GGQ+   G   G+G    + D          +
Sbjct: 291 RENALLEYSKKGDKEEDVLAKVPFYLTPGGQIVIEGKINGEGGNFFLVDSLDVGRTFTVS 350

Query: 551 EGIFVHHAIVERGILRTEMS 570
           EG+   + +   G       
Sbjct: 351 EGMIHKYHLARYGGWIIGQR 370


>gi|261495269|ref|ZP_05991723.1| bacteriophage terminase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309094|gb|EEY10343.1| bacteriophage terminase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 406

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 29/234 (12%)

Query: 102 FKERAI---QLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD--KIIRITT 156
           + + A    + AW  L      +   +++T   E+  +     +      +   II ++ 
Sbjct: 126 WIDEAETVSETAWRKLIPTVRENNSEIWVTWNPENRGSA-TDTRFRQNPPENSCIIEMSY 184

Query: 157 NDNFWSMAETGPCGPCSEIFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214
            DN W            +   D      I  G    + E + +   +  +          
Sbjct: 185 QDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAYLEASEAQIFRGKYQEMEFVPNPDFDG 244

Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR- 273
             + L     D G   +  A V   K   ++ DL+   I+      G++ +       + 
Sbjct: 245 PYYGL-----DFGFAQDPTAAV---KCWVFNGDLY---IEFEAGKVGLELDDTADFIAKG 293

Query: 274 --VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325
              I DH+     + AD   P +    Y+ R  + R +   +  G  E  + H+
Sbjct: 294 VPQIADHV-----VRADSARPESI--SYLKRHGLPRIIGVDKWKGSVEDGIEHI 340


>gi|146185520|ref|XP_001032012.2| UBX domain containing protein [Tetrahymena thermophila]
 gi|146142736|gb|EAR84349.2| UBX domain containing protein [Tetrahymena thermophila SB210]
          Length = 2004

 Score = 39.7 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           I+ E + +    RIE +  ++       + ++L+ + +  K  +   + R+ ++ E  ++
Sbjct: 705 ILEEETEKK---RIEELQNKK-----KKEQQELERIQNEYKKQKEEELERIAKLKEIKKQ 756

Query: 770 LQLIHAKRKLQLNVEDLSCHK 790
            +    K +LQ   E+    K
Sbjct: 757 QEEEIEKLRLQRAREEEEKQK 777


>gi|297587724|ref|ZP_06946368.1| histidine kinase [Finegoldia magna ATCC 53516]
 gi|297574413|gb|EFH93133.1| histidine kinase [Finegoldia magna ATCC 53516]
          Length = 460

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398
            + +    I + +   +          +  L+  +    K+ + N +   K + +    L
Sbjct: 276 YIGENTNRIGKYI---ETLMLVNKSNQVNELN-FIEIRAKEFVENIEKLSKEFTST-YKL 330

Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS------GTTEKIWFSLKEKY 452
           ++++DI    G+  +D+ +F +A     S A  HS    +         +K+  S+ ++ 
Sbjct: 331 NLLEDINYENGVLIVDLKNFERAFLNILSNAEEHSPKNSTIKLIICSKADKLKISIVDQG 390

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS--GQK 510
               F G DLL  +    +  K    K    +   VS  +  +     ++E      G K
Sbjct: 391 H--GFTGEDLLYATDQFYQGDKSRHSKENYGIGLFVSEQIIKMHGGSIVLENRTDKIGAK 448

Query: 511 VEVVFD 516
           V ++  
Sbjct: 449 VSILLP 454


>gi|283767918|ref|ZP_06340833.1| surfactin/siderophore synthetase [Staphylococcus aureus subsp. aureus
            H19]
 gi|283461797|gb|EFC08881.1| surfactin/siderophore synthetase [Staphylococcus aureus subsp. aureus
            H19]
          Length = 2397

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 113/311 (36%), Gaps = 26/311 (8%)

Query: 554  FVHHAIVERGILRTEMSLVL----TIDYQNRRQLSINHSAT----HLLHHALSTILGSHV 605
            F+  + + + + R+   + L     IDY  R+   +           + HAL  I G + 
Sbjct: 775  FIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEIEHALERIQGINK 834

Query: 606  SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI----- 660
            +        D  ++ V + + + +     I+  +  +      +    M+ E        
Sbjct: 835  AVVIVQNH-DQDQYIVAYYEAMHTLSHNKIKSQL-RMTLPEYMIPVNFMHIEQIPITING 892

Query: 661  ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG- 719
                 AL    Y D    V+   +   +         HV+  G     + +   S++A  
Sbjct: 893  KLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATL 952

Query: 720  -IRRIEAITGQR-ARSHLMGQDEKLKSLASFLKVSQGN---VVGRVEEIWEEYRKLQLIH 774
             + RIEA TG+R     L+ +    +   +  KV + N   +   + +         L  
Sbjct: 953  VVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVK-----DDYVLSS 1007

Query: 775  AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            A++++ L  +      + +V F+  + SE++  +L+  +  L ++ +      + +  E 
Sbjct: 1008 AQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQHLIERHEILRTQYIVVDDEV 1067

Query: 835  KASVLIVVTED 845
            +  ++  V  D
Sbjct: 1068 RQRIVADVVAD 1078


>gi|282915506|ref|ZP_06323278.1| surfactin/siderophore synthetase [Staphylococcus aureus subsp. aureus
            D139]
 gi|282320609|gb|EFB50947.1| surfactin/siderophore synthetase [Staphylococcus aureus subsp. aureus
            D139]
          Length = 2397

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 113/311 (36%), Gaps = 26/311 (8%)

Query: 554  FVHHAIVERGILRTEMSLVL----TIDYQNRRQLSINHSAT----HLLHHALSTILGSHV 605
            F+  + + + + R+   + L     IDY  R+   +           + HAL  I G + 
Sbjct: 775  FIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEIEHALERIQGINK 834

Query: 606  SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI----- 660
            +        D  ++ V + + + +     I+  +  +      +    M+ E        
Sbjct: 835  AVVIVQNH-DQDQYIVAYYEAMHTLSHNKIKSQL-RMTLPEYMIPVNFMHIEQIPITING 892

Query: 661  ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG- 719
                 AL    Y D    V+   +   +         HV+  G     + +   S++A  
Sbjct: 893  KLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATL 952

Query: 720  -IRRIEAITGQR-ARSHLMGQDEKLKSLASFLKVSQGN---VVGRVEEIWEEYRKLQLIH 774
             + RIEA TG+R     L+ +    +   +  KV + N   +   + +         L  
Sbjct: 953  VVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVK-----DDYVLSS 1007

Query: 775  AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            A++++ L  +      + +V F+  + SE++  +L+  +  L ++ +      + +  E 
Sbjct: 1008 AQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQHLIERHEILRTQYIVVDDEV 1067

Query: 835  KASVLIVVTED 845
            +  ++  V  D
Sbjct: 1068 RQRIVADVVAD 1078


>gi|260495810|ref|ZP_05815931.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
 gi|260196657|gb|EEW94183.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 3_1_33]
          Length = 472

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 73/197 (37%), Gaps = 30/197 (15%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG------------ 719
           +   + ++   +E+    S   CGGT          + I  E   ++G            
Sbjct: 225 HGGGLDLIFPHHENEMAQSKCACGGTFARYWMHNGYIKINGEKMSKSGSFILLRDILKHF 284

Query: 720 ---IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQ 771
              + R+  + G   R  +   DE+L    S L+    N + R++E+  E  K      +
Sbjct: 285 EGRVIRL-FVLGSHYRKPMDFSDEELNQTKSSLE-RIENTLKRIKELDRENIKGTDDCQE 342

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  K++++    +           + HI   V  K +   +D      +S  ++     
Sbjct: 343 LLATKKEMEAKFIEAMDEDFNTAQALGHIFELV--KAVNKTLDEANISKKSLEVI----- 395

Query: 832 KEKKASVLIVVTEDLLD 848
            ++  S L+++ +D+L 
Sbjct: 396 -DEVYSYLVMIIQDVLG 411


>gi|257887182|ref|ZP_05666835.1| protease/peptidase [Enterococcus faecium 1,141,733]
 gi|257823236|gb|EEV50168.1| protease/peptidase [Enterococcus faecium 1,141,733]
          Length = 341

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             LG  +  +     AL        PE  + + +++  + S  +RF + +  G    +  
Sbjct: 184 EKLGVEDTTVKS--GALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVSEGRNKSEEA 241

Query: 373 LSHLGKDEILNGDVA--FKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           +  +    I +G  A    L D  G P D +Q +   + L   +++ +
Sbjct: 242 VKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDAELVEY 289


>gi|123468897|ref|XP_001317664.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121900403|gb|EAY05441.1| hypothetical protein TVAG_197420 [Trichomonas vaginalis G3]
          Length = 1033

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-EDLSCHK 790
             HL  ++ +L +    +   + ++  ++ E  +  ++L+L  +K+K+  +    +    
Sbjct: 363 LDHLNTRNSELTAELQLVNAKKDDLQKKLAEASQARQQLELNVSKQKVTFDALTTVHSET 422

Query: 791 IADVNFMSHIISEVDS------KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
           + ++  +   +S +        K  K   D  +KKI     +L     E+K  +   + E
Sbjct: 423 VLELETVRKTLSNLSPLKENPEKTQKKEQDQFKKKIN----LLEQTISEQKKQISAAINE 478

Query: 845 DLLDRFNAVDLARLSA 860
            +  +    +LARLSA
Sbjct: 479 AISTK---GELARLSA 491


>gi|226958601|ref|NP_084311.1| golgi autoantigen, golgin subfamily b, macrogolgin 1 [Mus musculus]
          Length = 3238

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 44  RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 103

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 104 KAKIMSLNK 112


>gi|224073870|ref|XP_002187950.1| PREDICTED: centrosomal protein 110kDa [Taeniopygia guttata]
          Length = 2353

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 729 QRARSHLMGQD-EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
            +A+     Q  + +      L+     ++ R+ +  EE + L+      ++  N E L 
Sbjct: 575 MKAQKASKEQHLDIMNKHCQQLETRLDEMLSRIAKEAEEIKDLEQQLTDGQIAAN-EALK 633

Query: 788 CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
               + +  +   +  V   +K+       LQK+ +S +  L G+ ++K    ++     
Sbjct: 634 RDLESIITGLQEYLQSVKHQAKQANEECKKLQKEKESLLGRLAGLEEDKNNLEVVA---- 689

Query: 846 LLDRFNAVDLARLSA 860
                +A ++ +  A
Sbjct: 690 ----MDAENMRKEIA 700


>gi|187956399|gb|AAI50732.1| Golgb1 protein [Mus musculus]
          Length = 3238

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 44  RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 103

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 104 KAKIMSLNK 112


>gi|148665530|gb|EDK97946.1| mCG141708, isoform CRA_a [Mus musculus]
          Length = 3176

 Score = 39.7 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 44  RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 103

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 104 KAKIMSLNK 112


>gi|148665531|gb|EDK97947.1| mCG141708, isoform CRA_b [Mus musculus]
          Length = 3138

 Score = 39.7 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 6   RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 65

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 66  KAKIMSLNK 74


>gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1167

 Score = 39.7 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 13/140 (9%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790
           A   L  Q   LK   + L+  Q  +    E++ E+ + L     +  L    E+L+  +
Sbjct: 420 ANEELEEQSRILKESQAHLETQQAELEQTNEQLAEQSKAL--AEQRDALDRKNEELNMAQ 477

Query: 791 IADVNFMSHIISEVD------SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                 +     E+       S+ L ++   L+  + S +I+   +++  K ++     +
Sbjct: 478 AE----LQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPKENLTAEQVK 533

Query: 845 DLLDRFNAV-DLARLSAKVL 863
                ++A  DL  L   +L
Sbjct: 534 FAESIYSAGNDLLNLINDIL 553


>gi|326507400|dbj|BAK03093.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326517138|dbj|BAJ99935.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 240

 Score = 39.7 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
              S       +L++ A  LK + G++  +++E+  E  +L+    K KL+  
Sbjct: 109 AILSDATRMVTQLRAEAKQLKDTNGSLEDKIKELKAEKDELRDEKQKLKLEKE 161


>gi|302829030|ref|XP_002946082.1| component of oligomeric golgi complex 5 [Volvox carteri f.
           nagariensis]
 gi|300268897|gb|EFJ53077.1| component of oligomeric golgi complex 5 [Volvox carteri f.
           nagariensis]
          Length = 835

 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 698 HVSSTGEIMLLY---IVSESSIRAGIRRIEA-ITGQRARSHLMGQDEKLKSLASFLKVSQ 753
           HV    +        ++S  S+++ +RRI A + G      +  + ++L+++ + + + +
Sbjct: 86  HVRRMLDAENSVRDLVLSVESLQSAVRRIRAEVVGP--YEQIKHKTQQLRNIHATVDILR 143

Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD--VNFMSHIISEVDSKELKS 811
             V+ R++   +   +L +  A+  L    + ++  +  D  V+         D++ L+S
Sbjct: 144 H-VIHRLKLAQKLRAQLAVPAAQVDLAKAAKLITDIRAVDAEVDLSGIDAVAADAEFLES 202

Query: 812 VMDALQKKIQSGI 824
              ++Q++ ++ +
Sbjct: 203 ARKSVQEQAEAAL 215


>gi|19703613|ref|NP_603175.1| DNA repair protein recN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713719|gb|AAL94474.1| DNA repair protein recN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 558

 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 31/184 (16%)

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691
             +ED  N+I   +  +     + +  A        +  KY  R     +EY +      
Sbjct: 280 YELEDCANEIEDISKGIDVTENDLDKIASRMNTLKRIKEKYK-RTLPELIEYREDLKEKL 338

Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751
                    S  +                        +  +  L    ++   +A  L  
Sbjct: 339 ---------SDIDSGDFKT------------------KELKKELNKIKDEYDKIAEKLTN 371

Query: 752 SQGNVVGRVE-EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKEL 809
           S+  +  ++E E+  E + L +  AK K+Q+N  +   ++   DV F        D K L
Sbjct: 372 SRKEIAVKIENELLNELKFLNMEDAKLKVQINKLERMTNEGYDDVEFFISTNVGQDLKPL 431

Query: 810 KSVM 813
             + 
Sbjct: 432 NKIA 435


>gi|221115949|ref|XP_002162030.1| PREDICTED: similar to Golgin subfamily B member 1 [Hydra
           magnipapillata]
          Length = 7046

 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           +  L   +EKL SL+     ++  +   +E++      LQL   K       +D    K 
Sbjct: 633 KERLRELNEKLLSLSESSNATESKLTAEIEQLQSVISSLQLDKEKH-----ADDFKEFKK 687

Query: 792 ADVNFMSHIISEVDSKE--LKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDL 846
             ++     ++E+++KE  LK  +D L +K+   +  +  L      K     ++  +  
Sbjct: 688 KTLSNFKQKVTEMNAKECSLKENVDVLTEKLLVAEEALSNLNLSFSRKADECSVMANDLA 747

Query: 847 LDRFNAVDL 855
            +R    +L
Sbjct: 748 NERVIVGEL 756



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +  L   +EKL SL+     ++  +   +E++      LQL   K       +D    K 
Sbjct: 957  KERLRELNEKLLSLSESSNATESKLTAEIEQLQSVISSLQLDKEKH-----ADDFKEFKK 1011

Query: 792  ADVNFMSHIISEVDSKE--LKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDL 846
              ++     ++E+++KE  LK  +D L +K+   +  +  L      K     ++  +  
Sbjct: 1012 KTLSNFKQKVTEMNAKECSLKENVDVLTEKLLVAEEALSNLNLSFSRKADECSVMANDLA 1071

Query: 847  LDRFNAVDL 855
             +R    +L
Sbjct: 1072 NERVIVGEL 1080



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +  L   +EKL SL+     ++  +   +E++      LQL   K       +D    K 
Sbjct: 1281 KERLRELNEKLLSLSESSNATESKLTAEIEQLQSVISSLQLDKEKH-----ADDFKEFKK 1335

Query: 792  ADVNFMSHIISEVDSKE--LKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDL 846
              ++     ++E+++KE  LK  +D L +K+   +  +  L      K     ++  +  
Sbjct: 1336 KTLSNFKQKVTEMNAKECSLKENVDVLTEKLLVAEEALSNLNLSFSRKADECSVMANDLA 1395

Query: 847  LDRFNAVDL 855
             +R    +L
Sbjct: 1396 NERVIVGEL 1404



 Score = 39.3 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 732  RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
            +  L   +EKL SL+     ++  +   +E++      LQL   K       +D    K 
Sbjct: 1605 KERLRELNEKLLSLSESSNATESKLTAEIEQLQSVISSLQLDKEKH-----ADDFKEFKK 1659

Query: 792  ADVNFMSHIISEVDSKE--LKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDL 846
              ++     ++E+++KE  LK  +D L +K+   +  +  L      K     ++  +  
Sbjct: 1660 KTLSNFKQKVTEMNAKECSLKENVDVLTEKLLVAEEALSNLNLSFSRKADECSVMANDLA 1719

Query: 847  LDRFNAVDL 855
             +R    +L
Sbjct: 1720 NERVIVGEL 1728


>gi|293557142|ref|ZP_06675696.1| putative signal peptide peptidase [Enterococcus faecium E1039]
 gi|291600711|gb|EFF31009.1| putative signal peptide peptidase [Enterococcus faecium E1039]
          Length = 341

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372
             LG  +  +     AL        PE  + + +++  + S  +RF + +  G    +  
Sbjct: 184 EKLGVEDTTVKS--GALKDMGSGTRPETKEEEAVLQAYIDSAYQRFVRIVSEGRNKSEEA 241

Query: 373 LSHLGKDEILNGDVA--FKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
           +  +    I +G  A    L D  G P D +Q +   + L   +++ +
Sbjct: 242 VKKIADGRIYDGVQAKEVGLVDELGFPEDALQAMRKEQKLEDAELVEY 289


>gi|317130082|ref|YP_004096364.1| LPXTG-motif cell wall anchor domain protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475030|gb|ADU31633.1| LPXTG-motif cell wall anchor domain protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 786

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 18/101 (17%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           E I+G              +  +  L+     +  ++EE+ E  ++L+  +   +LQL V
Sbjct: 610 EFISGDE------------EDASDKLEQKVAELESQIEELNERLQELENNNEIDQLQLMV 657

Query: 784 EDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQS 822
           ++L    +A    +S    +V++    L+  +++L+ +I+ 
Sbjct: 658 DELEAELVA----LSAQYDDVEALVTMLEQQVESLKAQIEE 694


>gi|147905494|ref|NP_001086958.1| calcium-binding and coiled-coil domain-containing protein 1-B
           [Xenopus laevis]
 gi|82182345|sp|Q6DD09|CAO1B_XENLA RecName: Full=Calcium-binding and coiled-coil domain-containing
           protein 1-B
 gi|50414908|gb|AAH77823.1| MGC80479 protein [Xenopus laevis]
          Length = 547

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHK 790
             L+ +++      S L   +  +  R+ ++  E +    ++    R+L+  V      +
Sbjct: 201 QDLVMREQLAIEEQSLLSCQEAELRERILQLQGEIKIMNKKMQEKDRELEGTVAIKLSLE 260

Query: 791 IADVNFMSHIISE--VDSKELKSVMDALQKKIQSGIIMLVGISK 832
              V  +   ++E  V+ K  +  +D+L++K++S   ML    +
Sbjct: 261 NKKV-VLKQHLAETTVEIKRYQLQVDSLREKLRSTQDMLSASQQ 303


>gi|292623687|ref|XP_001337146.3| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Danio rerio]
          Length = 64

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389
           ++++ +  E+ +F KTL R   +LD  +  LG+   +   + F 
Sbjct: 1   MVKDIINEEEAQFLKTLSRRRRILDRKIQSLGESTTIPEGMLFT 44


>gi|224010341|ref|XP_002294128.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970145|gb|EED88483.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 2969

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 713  ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-EIWEEYRKLQ 771
            ESS  + I R++A       S +   ++++KS+   L   Q      +  ++ E+ + L+
Sbjct: 1282 ESSHASAIERLKAAHEDERVSLIQSHEKQIKSIEEELNSEQQTANEELTVQLDEKTKALE 1341

Query: 772  LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820
                  K     E  + H I   N + H   E    +LK++ D    K+
Sbjct: 1342 QAQTDLK---AAEKKTAHAIQVANKIKHAAGE----KLKALNDEHANKL 1383


>gi|147785376|emb|CAN70830.1| hypothetical protein VITISV_005283 [Vitis vinifera]
          Length = 384

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH 789
              S  +    +L+S A  LK S G++  +++E+  E  +L+    + K +    +    
Sbjct: 92  AILSDAVRMVTQLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVK 151

Query: 790 KI 791
            I
Sbjct: 152 AI 153


>gi|88607718|ref|YP_505783.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
 gi|88598781|gb|ABD44251.1| threonyl-tRNA synthetase [Anaplasma phagocytophilum HZ]
          Length = 615

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 30/209 (14%)

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           ID +    +    +A  +   A+S+++  ++       T DG   D      ++    + 
Sbjct: 40  IDCEEGINILRKSTAF-ITAMAVSSVVP-NMKLAVCTETSDGFYLDFDSETKLSEKSFED 97

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694
           IE  + +I+ ++   V    ++++AI            ++  ++  +E           C
Sbjct: 98  IEKKIEEIVRKDEKFVRETWSKKEAIT------FFENNSETYQLEILEQNTQENIIVYRC 151

Query: 695 G-------GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747
           G          V ST  I  L +   S +                     +++ L+ ++ 
Sbjct: 152 GSHIFQNHSPLVPSTKYIGALKLTKLSGV---------------YWLGDSKNKMLQRISG 196

Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
            ++ ++  +    + + E  R+     AK
Sbjct: 197 VVQENKEKLDAYFKLLEEAERRDHRKIAK 225


>gi|224076706|ref|XP_002304984.1| predicted protein [Populus trichocarpa]
 gi|222847948|gb|EEE85495.1| predicted protein [Populus trichocarpa]
          Length = 243

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
                    +L+  +  LK S  ++  +++E+  E  K +L   K+KL++  E+L   + 
Sbjct: 123 LVDAARMVTQLRDESQKLKESIESLQEKIDELKAE--KNELRDEKQKLKMEKENLEWQQK 180

Query: 792 A 792
           A
Sbjct: 181 A 181


>gi|119568466|gb|EAW48081.1| laminin, alpha 2 (merosin, congenital muscular dystrophy), isoform
            CRA_b [Homo sapiens]
          Length = 2107

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|119568467|gb|EAW48082.1| laminin, alpha 2 (merosin, congenital muscular dystrophy), isoform
            CRA_c [Homo sapiens]
          Length = 3116

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|119568465|gb|EAW48080.1| laminin, alpha 2 (merosin, congenital muscular dystrophy), isoform
            CRA_a [Homo sapiens]
          Length = 2480

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|119466532|ref|NP_001073291.1| laminin subunit alpha-2 isoform b precursor [Homo sapiens]
          Length = 3118

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|215274259|sp|P24043|LAMA2_HUMAN RecName: Full=Laminin subunit alpha-2; AltName: Full=Laminin M chain;
            AltName: Full=Laminin-12 subunit alpha; AltName:
            Full=Laminin-2 subunit alpha; AltName: Full=Laminin-4
            subunit alpha; AltName: Full=Merosin heavy chain; Flags:
            Precursor
 gi|55664967|emb|CAH70492.1| laminin, alpha 2 (merosin, congenital muscular dystrophy) [Homo
            sapiens]
 gi|55665106|emb|CAH72952.1| laminin, alpha 2 (merosin, congenital muscular dystrophy) [Homo
            sapiens]
 gi|55665575|emb|CAH70771.1| laminin, alpha 2 (merosin, congenital muscular dystrophy) [Homo
            sapiens]
 gi|55960357|emb|CAI15185.1| laminin, alpha 2 (merosin, congenital muscular dystrophy) [Homo
            sapiens]
 gi|55961190|emb|CAI16682.1| laminin, alpha 2 (merosin, congenital muscular dystrophy) [Homo
            sapiens]
 gi|56205913|emb|CAI22470.1| laminin, alpha 2 (merosin, congenital muscular dystrophy) [Homo
            sapiens]
          Length = 3122

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|1661108|gb|AAB18388.1| laminin alpha 2 chain [Homo sapiens]
          Length = 3110

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|28559088|ref|NP_000417.2| laminin subunit alpha-2 isoform a precursor [Homo sapiens]
 gi|225000032|gb|AAI72257.1| Laminin, alpha 2 [synthetic construct]
 gi|225000290|gb|AAI72564.1| Laminin, alpha 2 [synthetic construct]
          Length = 3122

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|438056|emb|CAA81394.1| laminin M chain (merosin) [Homo sapiens]
          Length = 3110

 Score = 39.3 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|265751145|ref|ZP_06087208.1| phenylalanyl-tRNA synthetase, alpha subunit [Bacteroides sp.
           3_1_33FAA]
 gi|263238041|gb|EEZ23491.1| phenylalanyl-tRNA synthetase, alpha subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 354

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
             LK  +  ++ ++E++ +E   LQ  +A+    L ++     K   +N +      V +
Sbjct: 2   RSLKNKEETMLAKIEQLLQEIEGLQAANAEELEALRIK--YLSKKGAINELMADFRNVPA 59

Query: 807 KELKSV---MDALQKKIQSGIIML 827
           ++ K V   ++ L+ K Q  I  L
Sbjct: 60  EQKKEVGMKLNELKNKAQERIATL 83


>gi|119715824|ref|YP_922789.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
 gi|119536485|gb|ABL81102.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
          Length = 1094

 Score = 39.3 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 75/221 (33%), Gaps = 30/221 (13%)

Query: 311  YARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370
             A+ +   E    ++L  +   M S  PE++  +      ++SE +R  +T+D     L 
Sbjct: 803  QAKKVEQDEAFKANILSIVTETMDSIVPEVVTREE-----IKSEQKRANRTMDDARSHLR 857

Query: 371  GVLSHLGKDEILNGDVAFKLYDTHGLPLDIM------------------QDILCARGLAG 412
            G    +    +  GD   +L +      D +                  Q+I    G   
Sbjct: 858  GFARTIPMFLMAYGDRDIRLANFDDYTPDDVFHEITGITEAEFRVLRDGQEITEEDGTVT 917

Query: 413  -----IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
                  D   F+QA++E  ++  A +       TE I+  + ++  +  F    +++   
Sbjct: 918  KIPGMFDEAVFDQAVQEFLNKKEALADYFDDAQTENIFAYIPQQKTSLVFTPQHVVKTMV 977

Query: 468  FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508
             + E         P      + S     +   E+V    +G
Sbjct: 978  DILEAEDPGVFADPDKTFADLFSTAGLYLM--ELVRRLDTG 1016


>gi|313247748|emb|CBY15872.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE--LKSIEDNVND 641
           +  HS+ H+L   +    G  +   G  I  DG  +D+       S+E  +  +E     
Sbjct: 133 TYWHSSAHILGECMERYFGGALCY-GPDI-EDGFYYDMWMGNTTISSEADMPKLEKLYYQ 190

Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           ++ +  P     + ++  I          +      +        G     +C G H+  
Sbjct: 191 MMKEKQPFQRLNVTKQQLIDMFKHNPFKQRLIAEKNIGDTTVYKCGNLID-MCRGPHLPH 249

Query: 702 TGEIMLLYIVSESS 715
           TG+     +   S+
Sbjct: 250 TGKAKACKLYKTSA 263


>gi|320034075|gb|EFW16021.1| predicted protein [Coccidioides posadasii str. Silveira]
          Length = 111

 Score = 39.3 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K   G+ + H I     L    ++  T+D   R  L   H   +LL   +  + G H   
Sbjct: 46  KSGNGVHIVHGI-RVATLWEGRAVQATVD--FRMYLLRVHVCMYLLVGIVRRVRGLHTDD 102

Query: 608 NG 609
           +G
Sbjct: 103 DG 104


>gi|149409915|ref|XP_001508543.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 719

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVNDII 643
             HS+ H++  A+  + G  +         +G  +D    +  ++S +   +E     I+
Sbjct: 149 YWHSSAHIMGEAMERVYGGCLCYGPPI--ENGFYYDMYLENGGVSSNDFAVLESLCKKIM 206

Query: 644 AQNLPVVTRIMNREDAIASGAAALLG-----TKYNDRVRVVSVEYEDGGVHSSALCGGTH 698
            +        + +E  +               K N     V   Y  G +    LC G H
Sbjct: 207 KEKQLFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTTTV---YRCGPLID--LCRGPH 261

Query: 699 VSSTGEIMLLYIVSESS 715
           V  TG+I  L I   SS
Sbjct: 262 VRHTGKIKTLKIHKNSS 278


>gi|62087424|dbj|BAD92159.1| laminin alpha 2 subunit precursor variant [Homo sapiens]
          Length = 1853

 Score = 39.3 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 454 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 513

Query: 689 HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
           + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 514 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 573

Query: 732 RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                   +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 574 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 633

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 634 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 672

Query: 845 DLLDRFNAVDLARLSAKVLGGGGG 868
                  A DLA  + K+  G  G
Sbjct: 673 AEKVAKEAKDLAHEATKLATGPRG 696


>gi|298693441|gb|ADI96663.1| surfactin/siderphore synthesase [Staphylococcus aureus subsp. aureus
            ED133]
          Length = 2391

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 96/262 (36%), Gaps = 18/262 (6%)

Query: 595  HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654
            HAL  I G + +        D  ++ V + + + +     I+  +  +      +    M
Sbjct: 818  HALERIQGINKAVVIVQNH-DQDQYIVAYYEAMHTLSHNKIKSQL-RMTLPEYMIPVNFM 875

Query: 655  NREDAI-----ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
            + E             AL    Y D    V+   +   +         HV+  G     +
Sbjct: 876  HIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFF 935

Query: 710  IVSESSIRAG--IRRIEAITGQR-ARSHLMGQDEKLKSLASFLKVSQGN---VVGRVEEI 763
             +   S++A   + RIEA TG+R     L+ +    +   +  KV + N   +   + + 
Sbjct: 936  ELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVK- 994

Query: 764  WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
                    L  A++++ L  +      + +V F+  + SE++  +L+  +  L ++ +  
Sbjct: 995  ----DDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSELNVAQLRQAVQHLIERHEIL 1050

Query: 824  IIMLVGISKEKKASVLIVVTED 845
                + +  E +  ++  V  D
Sbjct: 1051 RTQYIVVDDEVRQRIVADVVAD 1072


>gi|195469589|ref|XP_002099719.1| GE16641 [Drosophila yakuba]
 gi|194187243|gb|EDX00827.1| GE16641 [Drosophila yakuba]
          Length = 922

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
           G  A   L  ++EKLK +   L+  +  +  + +E+ EE R+L+L   +   Q  + D  
Sbjct: 69  GVSAERRLQDENEKLKRMLQKLEDERDGLKSKAKELGEEIRQLELRLREAAQQAEIGDKD 128

Query: 788 CHK-IADVNFMSHIISEVDSKE 808
               +++++    ++  +DSK 
Sbjct: 129 SSDPLSELDKQEQLLQNIDSKN 150


>gi|957279|gb|AAB33989.1| laminin M chain, merosin=basement membrane protein {G-domain}
           [human, placenta, Peptide Partial, 1751 aa]
          Length = 1751

 Score = 39.3 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 81/264 (30%), Gaps = 49/264 (18%)

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
           K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 360 KEIDQMIKELRRKNLETQKEIDEDELVAAEALLKKVKKLFGESRGENEEMEKDLREKLAD 419

Query: 689 HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
           + + +     +         E   L+ V           + ++ +G R IE     G   
Sbjct: 420 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRGIENTLKEGNDI 479

Query: 732 RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                   +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 480 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 539

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
            L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 540 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 578

Query: 845 DLLDRFNAVDLARLSAKVLGGGGG 868
                  A DLA  + K+  G  G
Sbjct: 579 AEKVAKEAKDLAHEATKLATGPRG 602


>gi|159479160|ref|XP_001697666.1| hypothetical protein CHLREDRAFT_185006 [Chlamydomonas reinhardtii]
 gi|158274276|gb|EDP00060.1| hypothetical protein CHLREDRAFT_185006 [Chlamydomonas reinhardtii]
          Length = 260

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNV 783
            G RA      Q ++L      LK ++  +  +   +E   EE ++LQ + A+   Q   
Sbjct: 77  AGWRA---FRKQQQQLSQACEQLKSAEERLAAKEKVLEREVEERKQLQELRAQELSQQVQ 133

Query: 784 EDLSCHKIA 792
           +     + A
Sbjct: 134 DAQRELEAA 142


>gi|157826482|ref|YP_001495546.1| alanyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
 gi|157801786|gb|ABV78509.1| Alanyl-tRNA synthetase [Rickettsia bellii OSU 85-389]
          Length = 71

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896
           + ++  + D+FNA  +A+  +  LGG GGGG+P +AQ+GG +  K  +    + S L
Sbjct: 13  VAISNAITDKFNAGFIAKELSLFLGGSGGGGQPSIAQAGGSDLAKLPKVKDQLQSLL 69


>gi|285014510|gb|ADC33137.1| helix-loop-helix-like protein [Triticum aestivum]
          Length = 240

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
              S       +L++ A  LK + G++  +++E+  E  +L+    K KL+  
Sbjct: 109 AILSDATRMVTQLRAEAQQLKDTNGSLEDKIKELKAEKDELRDEKQKLKLEKE 161


>gi|168217995|ref|ZP_02643620.1| peptidase, M23/M37 family protein [Clostridium perfringens NCTC
           8239]
 gi|182379986|gb|EDT77465.1| peptidase, M23/M37 family protein [Clostridium perfringens NCTC
           8239]
          Length = 441

 Score = 39.3 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 718 AGIRRIEAI--TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775
           + +  I+ +  T  +    +     +LKS  S LK  + ++  +  ++  E ++   + +
Sbjct: 161 SNVSSIKYVVDTDNKLIDDIKKVQSELKSEESQLKSQEEDLSSKKTKLENEKKEYDTLVS 220

Query: 776 KRKLQLN-VEDLSCHKIADVNFMS----HIISEV-----DSKELKSVMDALQKKIQSGII 825
           + + QLN +  L   K +++N +S     ++ E+     D+  LK  ++ L  + +S  +
Sbjct: 221 QYQSQLNELNSLEEEKQSEINSLSEKERTVLDEINSYEEDNANLKDYINNLINEKKSVKV 280


>gi|70945432|ref|XP_742536.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521575|emb|CAH80716.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 266

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDV 386
              +   +PE ++   +    ++       K     + LLD     + +L   EI+    
Sbjct: 134 IENLDIYFPETLKNLNMSNNNIK---NICFKNKLENIELLDISSNPIENLNFYEIIPNIK 190

Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418
             KL D + LP++ + ++   + +  +D+ ++
Sbjct: 191 TLKLNDNYSLPINNLSELNNFKNIQFLDMENY 222


>gi|71021529|ref|XP_760995.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
 gi|46100879|gb|EAK86112.1| hypothetical protein UM04848.1 [Ustilago maydis 521]
          Length = 759

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 15/138 (10%)

Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH----SKPITSAELKSIEDNVNDI 642
           HS+ H+L  A     G H+       T +G  +++       + I+ ++  ++E  + + 
Sbjct: 180 HSSAHVLGEACEKHYGCHLCIGPP--TEEGFFYEMAMGDSGERMISQSDFGALETLIKNA 237

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA-----LCGGT 697
             +       ++++E  +          KY   +    +                LC G 
Sbjct: 238 TKEKQKFERLVVSKEQLLEMFNYN----KYKQHIIQSKIPDGTSTTVYRCGPMIDLCVGP 293

Query: 698 HVSSTGEIMLLYIVSESS 715
           H+  TG I  + ++  S+
Sbjct: 294 HIPHTGRIKAMTVLKNSA 311


>gi|225684457|gb|EEH22741.1| autophagy protein [Paracoccidioides brasiliensis Pb03]
 gi|226294110|gb|EEH49530.1| autophagy protein [Paracoccidioides brasiliensis Pb18]
          Length = 210

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 12/68 (17%)

Query: 715 SIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNVV----------GRVEE 762
             RA  RRIE + G+RA   + +  +DE+L+  A  L   Q  +V           R ++
Sbjct: 121 KTRADTRRIEMLVGERAQLMTRVKDRDEELRGKAKLLDNLQSELVSLNLQFNMAEERSKK 180

Query: 763 IWEEYRKL 770
           +  E ++L
Sbjct: 181 LETENKEL 188


>gi|167508997|gb|ABZ81638.1| SiM protein [Streptococcus iniae]
          Length = 579

 Score = 39.3 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 29/163 (17%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA------------KRK 778
           A    + + EK  + A  L+     +   +E+   E ++L+   A            K +
Sbjct: 378 ALKAKVAELEKALAEAKGLEAKVAELEKALEKAQAEAKELEAKLAETKAELEKVQAEKAE 437

Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEKKA 836
           L+  +E +      +++ ++ ++++ +  ++EL  ++  L+K++++       +S E+KA
Sbjct: 438 LEATIETMKKEHAEELDKLNALLADKEKLNEELNKMIADLKKELENQ----ANLSNEEKA 493

Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879
            +     +  L++    +LA      +G   G     MA   G
Sbjct: 494 QL-----KAELEKLKQ-ELAAKINMPMGNTKG-----MANGAG 525


>gi|295670411|ref|XP_002795753.1| autophagy protein [Paracoccidioides brasiliensis Pb01]
 gi|226284838|gb|EEH40404.1| autophagy protein [Paracoccidioides brasiliensis Pb01]
          Length = 222

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 12/68 (17%)

Query: 715 SIRAGIRRIEAITGQRA--RSHLMGQDEKLKSLASFLKVSQGNVV----------GRVEE 762
             RA  RRIE + G+RA   + +  +DE+L+  A  L   Q  +V           R ++
Sbjct: 119 KTRADTRRIEMLVGERAQLMTRVKDRDEELRGKAKLLDNLQSELVSLNLQFNMAEERSKK 178

Query: 763 IWEEYRKL 770
           +  E ++L
Sbjct: 179 LETENKEL 186


>gi|224539754|ref|ZP_03680293.1| hypothetical protein BACCELL_04663 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518632|gb|EEF87737.1| hypothetical protein BACCELL_04663 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 131

 Score = 39.3 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA-ELKSIEDNVND 641
            +  H++ HLL  AL  +        G  I  +G  +DV   + +    +L +IE  + +
Sbjct: 69  HAFWHTSAHLLAEALQELYPGIQFGIGPAI-ENGFYYDVDPGEAVIKESDLPAIEAKMAE 127

Query: 642 IIAQ 645
           ++A+
Sbjct: 128 LVAK 131


>gi|145506561|ref|XP_001439241.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406425|emb|CAK71844.1| unnamed protein product [Paramecium tetraurelia]
          Length = 402

 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 64/163 (39%)

Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690
           E++ +E  + ++I +N  +   I N E         +     + +   V ++ +   +  
Sbjct: 147 EIQQMEQQIYNVIDENERLNKIISNLEQQHQEKDQEIKTLMMSIQKYEVEMKKQKDKLII 206

Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750
                   VS     M     S+SSI    +    I+ Q A ++    D   K + +  +
Sbjct: 207 LEKANKPAVSCNPFAMDNKKPSKSSISDLRQSKCKISEQDAIANRKKSDHVYKQVQTKSQ 266

Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
               ++  +++++  + ++LQL   + + +L   DL   +  D
Sbjct: 267 QDYSDLQNQIKQLQVDNQQLQLTIEELQEKLQSIDLQKSEKKD 309


>gi|94264839|ref|ZP_01288615.1| Glycine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|94268622|ref|ZP_01291238.1| Glycine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93451534|gb|EAT02351.1| Glycine--tRNA ligase [delta proteobacterium MLMS-1]
 gi|93454720|gb|EAT04981.1| Glycine--tRNA ligase [delta proteobacterium MLMS-1]
          Length = 291

 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 25/101 (24%)

Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFM 206
             +  IR   +D  W     G  G   E++ D                   +EI    + 
Sbjct: 103 PLEHDIRFVEDD--WESPTLGASGLGWEVWLDG------------------MEITQFTYF 142

Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDID 247
           Q          + P  +++   GLER+A  LQ   + YDI 
Sbjct: 143 QH----AGSLELHPV-TVEVTYGLERIAMYLQGVESVYDIS 178


>gi|255574131|ref|XP_002527981.1| conserved hypothetical protein [Ricinus communis]
 gi|223532607|gb|EEF34393.1| conserved hypothetical protein [Ricinus communis]
          Length = 440

 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 59/156 (37%), Gaps = 14/156 (8%)

Query: 709 YIVSESSIRAGIRRIEAITGQ--RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766
            I +   +        A  G+  +   ++  + E        L+        ++ E+  +
Sbjct: 103 KIDAAEQVGKA----HARAGELEKQVENIKKEVETQNREKEALEARANEAEKKIAELHLK 158

Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826
              LQ I+ ++K +L   +    K+A+   M          + K +M+     +   + +
Sbjct: 159 LENLQKINDEQKSKLRKTE-RALKVAEEELMKAKFEATS--KTKELMEVHGAWLPPWLAV 215

Query: 827 -LVGI----SKEKKASVLIVVTEDLLDRFNAVDLAR 857
            LV I    ++  + ++ +V+ + L  + +A   A+
Sbjct: 216 ELVRIQTHWNEHGRPAMELVIQKALDKKAHAEKWAK 251


>gi|326792049|ref|YP_004309870.1| methyl-accepting chemotaxis sensory transducer [Clostridium
           lentocellum DSM 5427]
 gi|326542813|gb|ADZ84672.1| methyl-accepting chemotaxis sensory transducer [Clostridium
           lentocellum DSM 5427]
          Length = 688

 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
           IEA     A        ++++ L+   + +  N+   + +I EE +KL L      L++ 
Sbjct: 528 IEAARAGEAGKGFAVVADEVRKLSVQTESAISNIASTL-QIIEEKKKLTLEQLMMALEVF 586

Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
            + L       VN ++ I +++D+K  +  +         G ++    + EKK   +  V
Sbjct: 587 NKQLPM-----VNGVTEIFTDIDTKMKEVDISLNNAHHMIGKVVEEKEAVEKKMKYIAQV 641

Query: 843 TEDLLD 848
            E+ + 
Sbjct: 642 VEEAVS 647


>gi|74206889|dbj|BAE33253.1| unnamed protein product [Mus musculus]
          Length = 146

 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 44  RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 103

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 104 KAKIMSLNK 112


>gi|12860565|dbj|BAB31989.1| unnamed protein product [Mus musculus]
          Length = 146

 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
           RI   T + A   L   ++ +  L   +      +  + E + EE +  +    K KL  
Sbjct: 44  RIMESTQEDALHRLAEAEKLVVELKDIISQKDVQLQQKDEALQEEKKAAENKIKKIKLHA 103

Query: 782 NVEDLSCHK 790
             + +S +K
Sbjct: 104 KAKIMSLNK 112


>gi|297621143|ref|YP_003709280.1| hypothetical protein wcw_0913 [Waddlia chondrophila WSU 86-1044]
 gi|297376444|gb|ADI38274.1| hypothetical protein wcw_0913 [Waddlia chondrophila WSU 86-1044]
          Length = 509

 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
           T  G         P     L+  E+ +   I +NL + T  M RE+A        L    
Sbjct: 35  TKKGFYCLCKFPHPFDDQALRMTEEELKRTIQENLKIETVEMMRENAAVLFEHRGLEPMA 94

Query: 673 NDRVRVVSVEYEDGGVHS-SALCGGTHVSSTGEIMLLYIV 711
           ++  +  S   E   +     +C   H+S T ++  + + 
Sbjct: 95  DEIRKGSSTIIELVRIEEFYGVCPKPHLSGTRQVGSIKLF 134


>gi|217077692|ref|YP_002335410.1| hypothetical protein THA_1631 [Thermosipho africanus TCF52B]
 gi|217037547|gb|ACJ76069.1| hypothetical protein THA_1631 [Thermosipho africanus TCF52B]
          Length = 315

 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +     +   +EKLK  A  LK     +   ++ I +E+++ ++     K++        
Sbjct: 89  KNIEELIKQSEEKLKE-AEKLKQENELLYKTLKSIEDEWKERKIKEEISKVE------VV 141

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
            K+ +++ +  I    DSKEL  +M++ +  +++  ++   +S +
Sbjct: 142 KKVENLDSLVEIFKNGDSKELLPLMNSEKVDVKTLAVVFQKLSPD 186


>gi|87240431|gb|ABD32289.1| tRNA-binding arm; t-snare [Medicago truncatula]
          Length = 992

 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND-IIAQNLPVVTRIMNR 656
           S ++   VS +   I  +  R    + +     +  S   N++D      L  V R M  
Sbjct: 322 SEVVSDLVSHDNETIVEENERDHANNIETDIKEQHLSSTQNMHDSDSKLELERVKREMKM 381

Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
            +A   GAA     K  D +  +  E E        L      S+  E+  L       +
Sbjct: 382 MEAALQGAARQAQAK-ADEIAKLMNENEQFKALIEDLKRK---SNEAEVESLREEYHQRV 437

Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
               R++ A+T +R    L  +  K    A+ LK     ++ +V    EE  K Q     
Sbjct: 438 STLERKVYALTKER--DTLRREQNKKSDAAALLKEK-DEIITQVMAEGEELSKKQATQES 494

Query: 777 --RKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKE 833
             RKL+  + DL   K      +    ++V+S K  K+  + L ++        + + KE
Sbjct: 495 TIRKLRAQIRDLEEEKKGLTTKLQVEENKVESIKRDKTATEKLLQETIEKHQNELAVQKE 554

Query: 834 KKASVLIVVTED 845
              + L    E 
Sbjct: 555 YYTNALAAAKES 566


>gi|320535524|ref|ZP_08035624.1| phosphoribulokinase / Uridine kinase family protein [Treponema
           phagedenis F0421]
 gi|320147585|gb|EFW39101.1| phosphoribulokinase / Uridine kinase family protein [Treponema
           phagedenis F0421]
          Length = 550

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%)

Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673
              +           + K IE+ + +++  ++P+ TR ++ E+AI     +     Y 
Sbjct: 101 YSYYYTLEGNNTEKIDFKKIEEKMRELVEADIPIQTRWLSYEEAIEMFQNSNQPDTYK 158


>gi|237756327|ref|ZP_04584879.1| glycyl-tRNA synthetase, alpha subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691513|gb|EEP60569.1| glycyl-tRNA synthetase, alpha subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 297

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 198 IEIW--NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
            E+W   +   QF    +     LP++S++   GLER+AT LQ K + YDI
Sbjct: 127 WEVWLDGMEITQFTYFQQAGSLDLPEISVEITYGLERIATYLQGKDSVYDI 177


>gi|188996974|ref|YP_001931225.1| glycyl-tRNA synthetase, alpha subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|229558524|sp|B2V9P8|SYGA_SULSY RecName: Full=Glycyl-tRNA synthetase alpha subunit; AltName:
           Full=Glycine--tRNA ligase alpha subunit; Short=GlyRS
 gi|188932041|gb|ACD66671.1| glycyl-tRNA synthetase, alpha subunit [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 297

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 198 IEIW--NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
            E+W   +   QF    +     LP++S++   GLER+AT LQ K + YDI
Sbjct: 127 WEVWLDGMEITQFTYFQQAGSLDLPEISVEITYGLERIATYLQGKDSVYDI 177


>gi|269958341|ref|YP_003328128.1| glycyl-tRNA synthetase subunit alpha [Anaplasma centrale str.
           Israel]
 gi|269848170|gb|ACZ48814.1| glycyl-tRNA synthetase subunit alpha [Anaplasma centrale str.
           Israel]
          Length = 283

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 9/39 (23%)

Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266
            GLER+A +LQ+  N YD+D            TG+KY  
Sbjct: 159 YGLERIAMILQDVDNVYDLD---------WNGTGVKYGD 188


>gi|310778465|ref|YP_003966798.1| glycyl-tRNA synthetase alpha chain [Ilyobacter polytropus DSM 2926]
 gi|309747788|gb|ADO82450.1| glycyl-tRNA synthetase alpha chain [Ilyobacter polytropus DSM 2926]
          Length = 292

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 15/107 (14%)

Query: 198 IEIW-----NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252
            E+W        F  F+Q    E  ++P    +   GLER+A  LQ K + YD++  K +
Sbjct: 127 WEVWLDGMEITQFTYFQQVGGLELEVVPA---ELTYGLERIALYLQGKESVYDLEWTKGV 183

Query: 253 ----IQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILP 292
               I+   +    KY        ++ +   D+ + +   + D ++ 
Sbjct: 184 KYGDIRFQYEYENSKYSFEKADLDLHFKWFDDYEKEALNALEDELVF 230


>gi|158301734|ref|XP_551101.3| AGAP001702-PA [Anopheles gambiae str. PEST]
 gi|157012616|gb|EAL38546.3| AGAP001702-PA [Anopheles gambiae str. PEST]
          Length = 752

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 88/279 (31%), Gaps = 26/279 (9%)

Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584
           GGQ  D    + +         Q     I   H  +     +   S+ L++D +    + 
Sbjct: 214 GGQP-DYAKVLQEER----LRRQHCERNIQSLHMKLLEYEEKI--SVALSVDKEKVSIID 266

Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPD-GLRFDVTHSKPITSAELKSIEDNVNDII 643
                T  L   L  +   H+  +   +  +   +      +   +  L  +    +   
Sbjct: 267 KLEQETSRLTGKLRDMELKHIDAHEKLMAENLEFKNKNLFLEKELAETLTLVRKLEDKKD 326

Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703
              + V   +    DA       L      D ++V      D         G     +  
Sbjct: 327 NLEIKVENLVSASRDAGEVHRQQL------DDLQVRLANSRDNERQLREQLGKQR-KANE 379

Query: 704 EIMLLYIVSESSIRAGIR-RIEAIT--------GQRARSHLMGQDEKLKSLASFLKVSQG 754
           ++       +  +  G+R R +           G+R  + +  ++E L+     +K    
Sbjct: 380 QLGSELAAEKQKLADGVRLRADFCALKTKTDALGKR-FADVTRENETLQDQLKHVKEQNA 438

Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
            +    +++ +E  +LQ +  K+  Q  +ED+   K+ +
Sbjct: 439 MLQEESKKLLKEL-ELQRLTLKKYYQSQLEDVVSDKLKE 476


>gi|296228557|ref|XP_002759862.1| PREDICTED: ankyrin repeat domain-containing protein 35 [Callithrix
           jacchus]
          Length = 997

 Score = 38.9 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 14/95 (14%)

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK--------------VSQGNV 756
           V+E   R+G     A   +R  S + G+ E+L+  A  LK                   +
Sbjct: 870 VAEERRRSGDLAARAAEQERQASEMRGRSEQLEKTAELLKEKMERLTGACRDKEAKIKEL 929

Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791
           + ++E++ EE   ++  +A+  LQL     +  +I
Sbjct: 930 LKKLEQLSEEVLAIRGENARLALQLQDSQKNHEEI 964


>gi|298579096|gb|ADI88851.1| HAF protein [Chlamydophila pneumoniae]
          Length = 469

 Score = 38.9 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E G +   I+NL  M  ++ +  E     + +I  G GL      LQ   +N        
Sbjct: 175 ENGRQLNSIFNLQNMMLQRASDHEFTEFGRSNIVLGAGL--YVNALQNLPSN-------- 224

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDH 278
               + Q  G+ Y+        V +DH
Sbjct: 225 ---LAAQYFGIAYKIRPEYRLGVFLDH 248


>gi|269302584|gb|ACZ32684.1| extracellular repeat, HAF family/autotransporter beta-domain
           protein [Chlamydophila pneumoniae LPCoLN]
          Length = 674

 Score = 38.9 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E G +   I+NL  M  ++ +  E     + +I  G GL      LQ   +N        
Sbjct: 380 ENGRQLNSIFNLQNMMLQRASDHEFTEFGRSNIVLGAGL--YVNALQNLPSN-------- 429

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDH 278
               + Q  G+ Y+        V +DH
Sbjct: 430 ---LAAQYFGIAYKIRPEYRLGVFLDH 453


>gi|238917356|ref|YP_002930873.1| Zn2+-exporting ATPase [Eubacterium eligens ATCC 27750]
 gi|238872716|gb|ACR72426.1| Zn2+-exporting ATPase [Eubacterium eligens ATCC 27750]
          Length = 631

 Score = 38.9 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 47/304 (15%), Positives = 98/304 (32%), Gaps = 53/304 (17%)

Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579
           F+A  GG   + G  +     L+          +F     + +G+         TID   
Sbjct: 299 FFAGIGG-ASNQGVLVKGSSYLEALAETDIV--VFDKTGTMTQGVFEVSGVYNNTIDKDE 355

Query: 580 --RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637
             +        +TH +  +L    G  + +    +T                     +E+
Sbjct: 356 LIKYAAFAESYSTHPISKSLQKAYGKEIDKT--LVTD--------------------VEE 393

Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-----VSVEYEDGGVHSSA 692
              + +  N  V  R +    A        LG +Y +         V+V+    G+   +
Sbjct: 394 ISGEGVKAN--VSGREVA---AGNRKLMRRLGLEYAECNEAGTQVHVAVDGAYAGLILIS 448

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752
                H              E   +AG+R+   +TG  A++      ++L   A + ++ 
Sbjct: 449 DLLKPHAKQAI---------EELKKAGVRKTVMLTGD-AKNVADAVAKELNIDAVYSELL 498

Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812
             + V +VEE+ E  +      +K+KL    + ++   +     +   +  + S      
Sbjct: 499 PADKVSKVEELLEHKK------SKKKLAFVGDGINDAPVLSRADIGIAMGALGSDAAIEA 552

Query: 813 MDAL 816
            D +
Sbjct: 553 ADIV 556


>gi|182419199|ref|ZP_02950452.1| zinc protease [Clostridium butyricum 5521]
 gi|237668935|ref|ZP_04528919.1| peptidase M16 domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376839|gb|EDT74410.1| zinc protease [Clostridium butyricum 5521]
 gi|237657283|gb|EEP54839.1| peptidase M16 domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 406

 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 78/276 (28%), Gaps = 21/276 (7%)

Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457
           +++  DI+        D   F + +E  +         +     +K+++++  K      
Sbjct: 96  IELFSDIIL---NPEFDEKGFKEEMEVIKEELDEWDEEIEQFCEDKLFYNIFNKRRIKNP 152

Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVEVVF 515
           I             D K   ++        + S+V +I      EI+++     K +V+ 
Sbjct: 153 IIGTKESLDNLTVTDLKRFYEENYFPENTSI-SVVTSIDFNSVKEIIDKYFGMWKSKVIR 211

Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575
             +         + +      D  ++QI   Q            +++   +        +
Sbjct: 212 RNS--------YINNIEYEKIDASKIQIAKRQGIKNAKVQMVFPLDKLNFK-------EL 256

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635
           +               +L   L T  G          + + L+              K++
Sbjct: 257 NAFRLFNQYFGEGVNSILFDTLRTKNGLVYDVITRISSENYLKMYKITFTTSKENVNKAV 316

Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
           E  +N I   N  V   I       +     L   +
Sbjct: 317 ELVMNLIKEINFKVELEIKLDSLIKSYKLKRLFREE 352


>gi|15618704|ref|NP_224990.1| hypothetical protein CPn0795 [Chlamydophila pneumoniae CWL029]
 gi|16752245|ref|NP_445613.1| hypothetical protein CP1076 [Chlamydophila pneumoniae AR39]
 gi|33242155|ref|NP_877096.1| hypothetical protein CpB0824 [Chlamydophila pneumoniae TW-183]
 gi|4377106|gb|AAD18933.1| hypothetical protein CPn_0795 [Chlamydophila pneumoniae CWL029]
 gi|7189990|gb|AAF38848.1| hypothetical protein CP_1076 [Chlamydophila pneumoniae AR39]
 gi|33236665|gb|AAP98753.1| hypothetical protein CpB0824 [Chlamydophila pneumoniae TW-183]
          Length = 356

 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E G +   I+NL  M  ++ +  E     + +I  G GL      LQ   +N        
Sbjct: 62  ENGRQLNSIFNLQNMMLQRASDHEFTEFGRSNIALGAGL--YVNALQNLPSN-------- 111

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDH 278
               + Q  G+ Y+        V +DH
Sbjct: 112 ---LAAQYFGIAYKIRPKYRLGVFLDH 135


>gi|270293330|ref|ZP_06199539.1| DNA mismatch repair protein MutS [Streptococcus sp. M143]
 gi|270278179|gb|EFA24027.1| DNA mismatch repair protein MutS [Streptococcus sp. M143]
          Length = 778

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 56/138 (40%), Gaps = 20/138 (14%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---QLIHAKRKLQLNVEDLSCHKI 791
           L   D+ LK+L S  ++    ++        E +KL   ++  +K K+    +     K+
Sbjct: 576 LSESDQILKNLHSKSQLKPHEIIEA----KAELKKLAPEKVDLSKNKVLQKAKKKRTPKV 631

Query: 792 AD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
            D +  +S+        +  ++ + L+       + L+ ++ E K   L+   ++   + 
Sbjct: 632 GDDIVVLSY-------GQRGTLTNQLKDGRWEAQVGLIKMTLEDKEFDLVQAQQEAPVKK 684

Query: 851 NAVDLARLSAKVLGGGGG 868
             V++ + ++     G G
Sbjct: 685 KQVNIVKRAS-----GRG 697


>gi|326530838|dbj|BAK01217.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 251

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782
              +  +    +L+S A  LK S  ++  ++ E+  E  +L+    K K +  
Sbjct: 126 AILNDAIRAVTELRSEAEKLKDSNESLQEKIRELKAEKNELRDEKQKLKAEKE 178


>gi|226816196|dbj|BAH56637.1| type II keratin [Solea senegalensis]
          Length = 484

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 71/211 (33%), Gaps = 25/211 (11%)

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT------KYND 674
           V   K     E+       N+ +     V    MN+ +  A  A AL          Y  
Sbjct: 192 VEDFKRKYEDEINKRAAAENEFVLLKKDVDAAYMNKVELEAK-ADALQDEINFLRAVYEA 250

Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734
            +R +  + +D  V          + ++  + +  IV+E  +RA    I   +   A + 
Sbjct: 251 ELRELQGQIKDTSVIVE-------MDNSRSLDMDSIVAE--VRAQYEDIANKSKAEAETW 301

Query: 735 LMGQDEKLKSLASF----LKVSQGNVVG---RVEEIWEEYRKLQLIHAKRKLQLNVEDLS 787
              + E++++ A      L+ ++  +      +  +  E   ++      + Q+   +  
Sbjct: 302 YKQKYEEMQTSAGSYGEDLRTTKAEIAELNRMIARLQNEIEAVKGQRVNLEAQIAEAEER 361

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQK 818
                 V      I +++    ++  D  ++
Sbjct: 362 GELA--VKDAKLRIRDLEDALQRAKQDMARQ 390


>gi|254173158|ref|ZP_04879831.1| conserved hypothetical protein [Thermococcus sp. AM4]
 gi|214032567|gb|EEB73396.1| conserved hypothetical protein [Thermococcus sp. AM4]
          Length = 181

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 21/180 (11%)

Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNRED--------AIASGAAALLGTKYNDRVR 677
           PI   E+  +E  +         V+  I +  +        A+A+GA A        R  
Sbjct: 7   PIGREEIHRLESILLFATLFRPEVIELIKDPAERLTWVDSLAVAAGAIAREKAGMTVREI 66

Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG-----IRRIEAITGQRAR 732
              +   +  +         H+    +   L   +   I+ G     ++ +E +      
Sbjct: 67  AEELGRTEATIRK-------HLKGETKAGQLVRETYELIKQGKLDELVKNVEILAKGGQL 119

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
             L  + EKLK     L+     +  +V+ + EE R L+      +  L+       +I 
Sbjct: 120 VAL-EEYEKLKREKEELEAKVKELEEKVKALEEENRALKAKLENVRKVLSDALDRIREIE 178


>gi|15836328|ref|NP_300852.1| hypothetical protein CPj0795 [Chlamydophila pneumoniae J138]
 gi|8979168|dbj|BAA99003.1| hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 356

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 13/87 (14%)

Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251
           E G +   I+NL  M  ++ +  E     + +I  G GL      LQ   +N        
Sbjct: 62  ENGRQLNSIFNLQNMMLQRASDHEFTEFGRSNIALGAGL--YVNALQNLPSN-------- 111

Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDH 278
               + Q  G+ Y+        V +DH
Sbjct: 112 ---LAAQYFGIAYKIRPKYRLVVFLDH 135


>gi|148264978|ref|YP_001231684.1| 30S ribosomal protein S1 [Geobacter uraniireducens Rf4]
 gi|146398478|gb|ABQ27111.1| SSU ribosomal protein S1P [Geobacter uraniireducens Rf4]
          Length = 403

 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 68/181 (37%), Gaps = 28/181 (15%)

Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702
           + QN+ VV + ++ E+   S +   L     D    V++ Y +G  H+        V+  
Sbjct: 249 VGQNVEVVIKQIDWENDKISFS---LKDTLADPWDKVALTYPEGSFHTG------RVARL 299

Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762
            +      +      +G+  +  I+   A   +    E +K            V  +VE 
Sbjct: 300 AQFGAFVTLD-----SGVDGLIHISKLGAGKRINHPREVIKE--------GETVEVKVES 346

Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
           +  E R+L L  A+       E+ +  +           +E  +K + ++ D L+ K++ 
Sbjct: 347 VDRENRRLSLSLAEVSRAAEQEERTIEE------FRRTAAETSAKTMGTLGDLLKAKLEK 400

Query: 823 G 823
           G
Sbjct: 401 G 401


>gi|66396355|ref|YP_240675.1| ORF023 [Staphylococcus phage 88]
 gi|66396430|ref|YP_240748.1| ORF024 [Staphylococcus phage 92]
 gi|304379025|ref|ZP_07361774.1| phage minor structural protein GP20 [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|62636770|gb|AAX91881.1| ORF023 [Staphylococcus phage 88]
 gi|62636844|gb|AAX91955.1| ORF024 [Staphylococcus phage 92]
 gi|304342401|gb|EFM08291.1| phage minor structural protein GP20 [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
          Length = 198

 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +  +  +  +DE++  L   +K     +   +EE+  +  +L+  + + +L   V+    
Sbjct: 45  EELKEEISKRDEQIVKLQDSVK-DDSEIQKELEELKNQNSELETKYKETQLNNAVKLAVA 103

Query: 789 HKIADVNFMSHIISE-----VDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            +  D N +   I++     VD   +K + +A++   +S   +        K
Sbjct: 104 KEANDANDILAFINKDELELVDDGTVKGLDEAIKTLKESKPYLFASSKPVGK 155


>gi|56201938|dbj|BAD73388.1| RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica
           Group]
          Length = 843

 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 729 QRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVE 784
           +  RS ++  DE   +L   +K  ++  +  +VE++ +E   L+   L   +++  +   
Sbjct: 573 EERRSAVLRADELETALMEMVKQDNRRELSAKVEQLEQELSDLRQALLDKQEQEQAMLQV 632

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +   +   V   + I +E D+   K     LQ+K +  +  L  +  
Sbjct: 633 LMRVEQEQKVTEDARIFAEQDAAAQKYAAHVLQEKYEEAMASLAQMEN 680


>gi|163784179|ref|ZP_02179114.1| glycyl-tRNA synthetase alpha subunit [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880552|gb|EDP74121.1| glycyl-tRNA synthetase alpha subunit [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 224

 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 198 IEIW--NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246
            E+W   +   QF    +     LP++S++   GLER+A  LQ   + YDI
Sbjct: 128 WEVWLDGMEITQFTYFQQTGSLDLPEISVEITYGLERIAMYLQNVDSVYDI 178


>gi|125528290|gb|EAY76404.1| hypothetical protein OsI_04332 [Oryza sativa Indica Group]
          Length = 824

 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 729 QRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVE 784
           +  RS ++  DE   +L   +K  ++  +  +VE++ +E   L+   L   +++  +   
Sbjct: 573 EERRSAVLRADELETALMEMVKQDNRRELSAKVEQLEQELSDLRQALLDKQEQEQAMLQV 632

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +   +   V   + I +E D+   K     LQ+K +  +  L  +  
Sbjct: 633 LMRVEQEQKVTEDARIFAEQDAAAQKYAAHVLQEKYEEAMASLAQMEN 680


>gi|125548882|gb|EAY94704.1| hypothetical protein OsI_16482 [Oryza sativa Indica Group]
          Length = 756

 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA      + +    +A+  KVS   ++ RV+ + +            KL+  ++D+  
Sbjct: 633 RRAYKAAREESDHAAEIAAGEKVSSA-LIERVDAMLQ------------KLEKEIDDVDA 679

Query: 789 HKIADVNFM-SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                   + S    +V   E+ +  + L+            I KE    ++  +++D  
Sbjct: 680 RIGNRWQLLDSDRDGKVTPDEVAAAANYLKD----------TIGKEGVQELISNLSKDKD 729

Query: 848 DRFNAVDLARLSAK 861
            +    D+ +L+++
Sbjct: 730 GKILVEDIVKLASQ 743


>gi|312869509|ref|ZP_07729664.1| isoleucine--tRNA ligase [Lactobacillus oris PB013-T2-3]
 gi|311094956|gb|EFQ53245.1| isoleucine--tRNA ligase [Lactobacillus oris PB013-T2-3]
          Length = 931

 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 391 YDTHGLPLD--IMQDILCARGLAGIDIISFNQALE-EQRSRARAHSLGLG-SGTTEKIWF 446
           +DTHGLP++  + +     + ++  +     +    EQ  + R     LG SG  +  + 
Sbjct: 94  WDTHGLPIEHQLTKSGYDRKKMSTSEFRDLCRKYALEQVDKQRTDFKRLGVSGEWDHPYL 153

Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506
           +L +     +F    +    +F K+      +KP     +  S++ +A V+  ++V    
Sbjct: 154 TLDK-----EFEAAQIRVFGEFAKKGLLYQAKKPVYWSWSSESALAEAEVEYHDVVA--- 205

Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ 547
                     +T F+AE   Q+ D    + D   L +    
Sbjct: 206 ----------KTAFFAE---QVKDGNDILDDNTYLVVWTTT 233


>gi|171689966|ref|XP_001909922.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944945|emb|CAP71056.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2731

 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 19/125 (15%)

Query: 705  IMLLYIVSESSIRAGIRR---IE-AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760
                 ++ E     G  R   +E A+ G +A +      E+LK L   L  +  + + R+
Sbjct: 1748 CGEFQLLHEERAAKGEERDANMEAAVVGNKAIA------EELKQLVDTLGSAVTDSMERM 1801

Query: 761  EE----IWEEYRKLQLIHAKRKLQLNVE-----DLSCHKIADVNFMSHIISEVDSKELKS 811
            EE    ++E    L     + +L+   E     +     I  V  ++  ++E   K L++
Sbjct: 1802 EEASKTVFERVEALVTKSDEGQLEAKTEHSLTRETVQEAITKVGSVNDQVAEYQPKILQT 1861

Query: 812  VMDAL 816
            + D +
Sbjct: 1862 LEDFV 1866


>gi|156387832|ref|XP_001634406.1| predicted protein [Nematostella vectensis]
 gi|156221489|gb|EDO42343.1| predicted protein [Nematostella vectensis]
          Length = 586

 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 15/105 (14%)

Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779
           +RR+E          L GQ  +L+ +    K ++  +V R+ ++ EE R+LQ   AK + 
Sbjct: 306 VRRME----------LEGQIRQLQQILRQQKEAEEELVARIGKLQEEKRELQERLAKFQR 355

Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL-QKKIQSG 823
            +   +    ++      +H+  E D K L++ +D + ++K+++ 
Sbjct: 356 SVAAAEQEKRELER----AHVRLEKDKKALRNTLDKIEREKLETD 396


>gi|145475325|ref|XP_001423685.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390746|emb|CAK56287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1328

 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 733  SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
            + L  Q  +L   A  L   + N++ R+ ++  E  +L      +  +   +  +   + 
Sbjct: 917  ADLKDQLGQLDKQARQLAAERDNLLDRIAKLQAEIEQLGKQIQVKNDENAAQSKTVSTLE 976

Query: 793  DVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                      E +++ LK ++D   K++  
Sbjct: 977  G-QVAQLKPLEAENQRLKQLIDQQTKELGD 1005


>gi|46445677|ref|YP_007042.1| hypothetical protein pc0043 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399318|emb|CAF22767.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 442

 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHG 395
           +P +   +  ++      ++R+ KT    +  L+ +      K+ I +   + +   TH 
Sbjct: 287 FPNVKLLQKTVKN-----EDRYWKTRSLIMQSLEKLAEDSAYKEYIRDSIKSLREVRTHS 341

Query: 396 LPLDIMQDILCARGLAGIDIISFNQALE--EQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453
           +  +  ++I  +  +   D   F +A+E  E    A+      G    E++   LK    
Sbjct: 342 IHAEEKEEIQKSLKILEEDKEEFQKAIEQDESSLAAKKGKKQRGEDDIEELEAKLKNDIE 401

Query: 454 A 454
            
Sbjct: 402 E 402


>gi|17534555|ref|NP_494921.1| hypothetical protein F59A6.5 [Caenorhabditis elegans]
 gi|13592430|gb|AAK31526.1| Hypothetical protein F59A6.5 [Caenorhabditis elegans]
          Length = 1286

 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 79/245 (32%), Gaps = 22/245 (8%)

Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652
           L  A   + G    +       +  R D            +++E  +  +   +L     
Sbjct: 347 LLEARRKVEGFDKLKQ----ELEKERDDALADVQKIREVKRNVERELQSL--TSLMAERD 400

Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV-SSTGEIMLLYIV 711
               E      +  ++   +      +S   E           G H+  +  +      +
Sbjct: 401 EQIEELKTKMFSFEMIKKDHESAKNELSRTQEKLDQM------GKHLIMADQQCSTFKSL 454

Query: 712 SESSIRAGIRRIE----AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767
            ES+  +  R IE     +   R     +    K++     LK        ++E + EE 
Sbjct: 455 KESAEGSRRRAIEQCNEMVVRIRDLQTSLESQRKVEQEVEMLKAENSRQAKKIEFMKEEI 514

Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGII 825
           +++ L + +   +L  +        D + +   +S+ DS+    K  +  ++   Q   +
Sbjct: 515 QEVHLDYRQELSRLAEKTKGKE---DADHLRLTLSQRDSELRSAKKTIQEVKADNQKVQL 571

Query: 826 MLVGI 830
           MLV +
Sbjct: 572 MLVEV 576


>gi|268574140|ref|XP_002642047.1| C. briggsae CBR-MEL-28 protein [Caenorhabditis briggsae]
 gi|187025049|emb|CAP35514.1| CBR-MEL-28 protein [Caenorhabditis briggsae AF16]
          Length = 1559

 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 78/231 (33%), Gaps = 25/231 (10%)

Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350
           LP    R  V++ ++         L   +     +   +   M +   E+      I   
Sbjct: 751 LPERMKRELVVQYVVDWVRASGNELNDKQ-----IAMEVIKIMTNQMLEV--DLEKIYYV 803

Query: 351 LRSEDER--FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408
           L  E       K  +    L + V S   ++  ++ +  +      G+P+ +        
Sbjct: 804 LDQEKNALTDNKAAEEVRALGEKVFSMQREE--VSYEKLWG----GGVPITVT------- 850

Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA--TQFIGYDLLRGS 466
            +   D+  F Q ++ Q  +AR   L   S    +++    EK+ A  ++ I  + L   
Sbjct: 851 -INKQDLKKFEQRMKLQMEKARLPVLDPESEMLYQVYLFENEKFNAMSSEAIRSNKLLSM 909

Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517
                 +K             +   VK + ++ ++++E V  +   V   +
Sbjct: 910 FMPGMYKKHFRSLQKSSKEKEIEQTVKTMFERQKMLDEVVEDEDDMVAVVR 960


>gi|116310694|emb|CAH67493.1| H0306B06.8 [Oryza sativa Indica Group]
 gi|116310712|emb|CAH67509.1| OSIGBa0092E01.4 [Oryza sativa Indica Group]
          Length = 753

 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA      + +    +A+  KVS   ++ RV+ + +            KL+  ++D+  
Sbjct: 630 RRAYKAAREESDHAAEIAAGEKVSSA-LIERVDAMLQ------------KLEKEIDDVDA 676

Query: 789 HKIADVNFM-SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                   + S    +V   E+ +  + L+            I KE    ++  +++D  
Sbjct: 677 RIGNRWQLLDSDRDGKVTPDEVAAAANYLKD----------TIGKEGVQELISNLSKDKD 726

Query: 848 DRFNAVDLARLSAK 861
            +    D+ +L+++
Sbjct: 727 GKILVEDIVKLASQ 740


>gi|115459204|ref|NP_001053202.1| Os04g0496800 [Oryza sativa Japonica Group]
 gi|38345383|emb|CAD41252.2| OSJNBa0067K08.12 [Oryza sativa Japonica Group]
 gi|113564773|dbj|BAF15116.1| Os04g0496800 [Oryza sativa Japonica Group]
 gi|125590879|gb|EAZ31229.1| hypothetical protein OsJ_15330 [Oryza sativa Japonica Group]
 gi|215697094|dbj|BAG91088.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 753

 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           +RA      + +    +A+  KVS   ++ RV+ + +            KL+  ++D+  
Sbjct: 630 RRAYKAAREESDHAAEIAAGEKVSSA-LIERVDAMLQ------------KLEKEIDDVDA 676

Query: 789 HKIADVNFM-SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                   + S    +V   E+ +  + L+            I KE    ++  +++D  
Sbjct: 677 RIGNRWQLLDSDRDGKVTPDEVAAAANYLKD----------TIGKEGVQELISNLSKDKD 726

Query: 848 DRFNAVDLARLSAK 861
            +    D+ +L+++
Sbjct: 727 GKILVEDIVKLASQ 740


>gi|237743811|ref|ZP_04574292.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 7_1]
 gi|229432842|gb|EEO43054.1| cysteinyl-tRNA synthetase [Fusobacterium sp. 7_1]
          Length = 472

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 30/197 (15%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG------------ 719
           +   + ++   +E+    S   CGGT          + I  E   ++G            
Sbjct: 225 HGGGLDLIFPHHENEMAQSKCACGGTFARYWMHNGYIKINGEKMSKSGSFVLLRDILKHF 284

Query: 720 ---IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQ 771
              + R+  + G   R  +   DE+L    S L+    N + R++E+  E  K      +
Sbjct: 285 EGRVIRL-FVLGSHYRKPMDFSDEELNQTKSSLE-RIENTLKRIKELDRENIKGTDDCQE 342

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831
           L+  K++++    +           + HI   V  K +   +D      +   ++     
Sbjct: 343 LLATKKEMEAKFIEAMDEDFNTAQALGHIFELV--KAVNKTLDEANISKEGLEVI----- 395

Query: 832 KEKKASVLIVVTEDLLD 848
            ++  S L+++ +D+L 
Sbjct: 396 -DEVYSYLVMIIQDVLG 411


>gi|225849322|ref|YP_002729486.1| magnesium transporter [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643176|gb|ACN98226.1| magnesium transporter [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 456

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 696 GTHVSSTGEIMLLYIVS-ESSIRAGIRRIEAITG-QRARSHLMGQDEKLK---------- 743
            TH        +   +S E   +  I  I   T  ++A       D+ +K          
Sbjct: 30  KTH--KGDIAEVFKYLSKEERTK--IFNILYKTNPEKAVEVFKDLDDIVKIEIIRSLHIK 85

Query: 744 -SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS--HI 800
            S+   LK+    +   +E I E+ +K  + + K + +  ++ L       V  +     
Sbjct: 86  DSVDFILKLPTPEIASIIENIPEDVKKAVIENLKGEEKEELKHLLSEGEDKVASIISDSY 145

Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
           ++ +D+  ++  +  +++  Q   ++ + +  EK   V ++  +DLL
Sbjct: 146 LAVLDTSTVEDAIQKVKEYNQDIELVYIYVVDEKNKLVGVISLKDLL 192


>gi|222619504|gb|EEE55636.1| hypothetical protein OsJ_03987 [Oryza sativa Japonica Group]
          Length = 854

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 729 QRARSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVE 784
           +  RS ++  DE   +L   +K  ++  +  +VE++ +E   L+   L   +++  +   
Sbjct: 603 EERRSAVLRADELETALMEMVKQDNRRELSAKVEQLEQELSDLRQALLDKQEQEQAMLQV 662

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            +   +   V   + I +E D+   K     LQ+K +  +  L  +  
Sbjct: 663 LMRVEQEQKVTEDARIFAEQDAAAQKYAAHVLQEKYEEAMASLAQMEN 710


>gi|206900142|ref|YP_002251544.1| uridine kinase [Dictyoglomus thermophilum H-6-12]
 gi|206739245|gb|ACI18303.1| uridine kinase [Dictyoglomus thermophilum H-6-12]
          Length = 555

 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 16/131 (12%)

Query: 558 AIVERGILRTEMSLVLTIDYQN----RRQLSINHSATHLLHHALSTILGSH-VSQNGSCI 612
             +E      E  + L I        RR L  ++    LL+ A+S I+    V    S  
Sbjct: 48  GDIETLNYMVEDDVRLDIIGSRSNIGRRILERSYIF--LLNFAVSLIMPEQKVLVEHSYH 105

Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672
                RF     K     ++  I + + +++ +NLP+  +++ +E+A+      +   K 
Sbjct: 106 RSLYGRFKNYVPK---GEDIDRIREKMRELVEKNLPIQKKLVTKEEALK-----IFKEK- 156

Query: 673 NDRVRVVSVEY 683
           N+  +V  ++Y
Sbjct: 157 NEEDKVRLMKY 167


>gi|303251622|ref|ZP_07337796.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649620|gb|EFL79802.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 409

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 102 FKERAI---QLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD-KIIRITTN 157
           + E A    ++AW  L          +++T   E   +    +    +  + KII +  +
Sbjct: 129 WVEEAETVSEVAWQKLEPTVREHNSEIWVTWNPEKRGSATDLRFRRHVPENAKIIEMNYS 188

Query: 158 DNFWSMAETGPCGPCSEIFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
           DN W   E        +   D      I  G      E + + + +  +  +        
Sbjct: 189 DNPWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQELEFEPNPDFDGP 248

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
            + L     D G   +  A +   K   +D DL+
Sbjct: 249 YYGL-----DFGFANDPTAAI---KCWVFDGDLY 274


>gi|45358351|ref|NP_987908.1| hypothetical protein MMP0788 [Methanococcus maripaludis S2]
 gi|44921109|emb|CAF30344.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 720

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q+    L G +E    +A            +  ++ E   +L+  +   K   +  + + 
Sbjct: 429 QKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETV 488

Query: 789 HKIADVNFMSHI-ISEVDSKELK-SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846
               ++   S I + +V++   +   +  +  ++   I ML      KK + +  + +D+
Sbjct: 489 KSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKML--GEDGKKINEVTGLIKDI 546

Query: 847 LD--RFNAVDLARLSAKVLGGGGG 868
            +     A++ +  +A+    G G
Sbjct: 547 AEQTGLLALNASIEAARAGDAGKG 570


>gi|310795398|gb|EFQ30859.1| threonyl and Alanyl tRNA synthetase second additional
           domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 81

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 647 LPVVTRIMNREDAIASGAAALLGT-----KYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701
           +PV     + ++    G   L+          ++ RVV +   +        CGGTHV S
Sbjct: 1   MPVRVDFWDEDEFRRRGLERLIPAARGPAPPGEKFRVVEIVGAE-----VYPCGGTHVDS 55

Query: 702 TGEIMLLYIVSESSIRAG 719
           T       +   S  +  
Sbjct: 56  TDLCGETVVKKISRSKGN 73


>gi|307252059|ref|ZP_07533958.1| Phage terminase, large subunit, PBSX family [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860359|gb|EFM92373.1| Phage terminase, large subunit, PBSX family [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 407

 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 102 FKERAI---QLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD-KIIRITTN 157
           + E A    ++AW  L          +++T   E   +    +    +  + KII +  +
Sbjct: 127 WVEEAETVSEVAWQKLEPTVREHNSEIWVTWNPEKRGSATDLRFRRHVPENAKIIEMNYS 186

Query: 158 DNFWSMAETGPCGPCSEIFFDQG--ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQE 215
           DN W   E        +   D      I  G      E + + + +  +  +        
Sbjct: 187 DNPWFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQELEFEPNPDFDGP 246

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249
            + L     D G   +  A +   K   +D DL+
Sbjct: 247 YYGL-----DFGFANDPTAAI---KCWVFDGDLY 272


>gi|119487437|ref|XP_001262511.1| Viral A-type inclusion protein repeat protein [Neosartorya fischeri
           NRRL 181]
 gi|119410668|gb|EAW20614.1| Viral A-type inclusion protein repeat protein [Neosartorya fischeri
           NRRL 181]
          Length = 1198

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 729 QRARSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
              ++ L   ++ +      A  LK         +E++ ++  + +    +++LQ  +E+
Sbjct: 391 DDVKAKLAESEDTIAKAGEEAEKLKAELKQKTEEIEKLQDQATQPKDNDQQKELQEKLEE 450

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833
           ++  K A    +           L+ ++D L+ +++   +++  +  +
Sbjct: 451 VAREKAASEKKLGV---------LQGLVDNLRSQLKDTEVVVSDLKAD 489


>gi|114609272|ref|XP_527501.2| PREDICTED: laminin alpha 2 subunit [Pan troglodytes]
          Length = 3122

 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 49/264 (18%)

Query: 633  KSIEDNVNDIIAQNLPVVTRIMNRE----DAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688
            K I+  + ++  +NL     I   E    +A+      L G    +   +     E    
Sbjct: 1719 KEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKVKKLFGESRGENEEMEKNLREKLAD 1778

Query: 689  HSSALCGGTHVSS-----TGEIMLLYIV----------SESSIRAGIRRIE--AITGQRA 731
            + + +     +         E   L+ V           + ++ +G R+IE     G   
Sbjct: 1779 YKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGNDI 1838

Query: 732  RSHLMGQDEKLKSLASFL-----KVSQ--GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
                    +++ S+  ++     K+      +  +++++ +E +  +L     + + +  
Sbjct: 1839 LDEANRLADEINSIIDYVEDIQTKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAA 1898

Query: 785  DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
             L+                  S  L  ++D  +    +        S  K       + E
Sbjct: 1899 QLND----------------SSAVLDGILDEAKNISFNATAAFKAYSNIKD-----YIDE 1937

Query: 845  DLLDRFNAVDLARLSAKVLGGGGG 868
                   A DLA  + K+  G  G
Sbjct: 1938 AEKVAKEAKDLAHEATKLATGPRG 1961


>gi|145348864|ref|XP_001418863.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579093|gb|ABO97156.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 203

 Score = 38.5 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 803 EVDSKELKSVMDALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856
           EV  + + ++ D   ++ + G       +++    +  K +++  V E L D+ NA +  
Sbjct: 66  EVSMEGMNAIPDPANEEERKGCSGHISKLIIGHNDQTNKIAMVAYVAEPLKDKLNATEWM 125

Query: 857 RLSAKVLGGGGGGGRP 872
           +       GGG GG P
Sbjct: 126 KAVCDTDLGGGVGGAP 141


>gi|28277050|gb|AAH44834.1| Myh9 protein [Mus musculus]
          Length = 895

 Score = 38.5 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 712 SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
            E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 16  KEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEE 75

Query: 767 YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
              L+             ++L   +  +V+ +   + + ++K  ++ +  +++K    + 
Sbjct: 76  LEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLED-EAKTHEAQIQEMRQKHSQAVE 134

Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867
            L    ++ K     +            +LA     +L G G
Sbjct: 135 ELADQLEQTKRVKATLEKAKQTLENERGELANEVKALLQGKG 176


>gi|192361080|ref|YP_001982067.1| ATP synthase, Delta/Epsilon chain, long alpha-helix domain
           [Cellvibrio japonicus Ueda107]
 gi|190687245|gb|ACE84923.1| ATP synthase, Delta/Epsilon chain, long alpha-helix domain
           [Cellvibrio japonicus Ueda107]
          Length = 1101

 Score = 38.5 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVN 795
           +L  L    K  Q ++   ++ + E+ RKL+    K+      ED         ++ DV 
Sbjct: 764 QLGDLYDLEKQQQDSLQQSIDTLKEKLRKLESELVKKMSDAKKEDRGALSEVGRELEDVP 823

Query: 796 F----MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
                +  +  E   ++L+  ++ L K     +  L+     + A +
Sbjct: 824 QYLARLQVLTEEALPEKLRQFLEYLNKSSDESVTQLLSYVDNEVAII 870


>gi|109948238|ref|YP_665466.1| DNA repair protein RecN [Helicobacter acinonychis str. Sheeba]
 gi|109715459|emb|CAK00467.1| DNA repair protein RecN [Helicobacter acinonychis str. Sheeba]
          Length = 524

 Score = 38.5 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 110/322 (34%), Gaps = 52/322 (16%)

Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649
           TH + HAL ++            + + L+  +  +  +   E   +E+  +  I + L  
Sbjct: 238 THKITHALESV----------GHSAEFLKSTLMETSALLEKEQAKLEECEHLDIEKVLE- 286

Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709
                  +  I SG     G+  + + R+  ++ E   +        TH     ++    
Sbjct: 287 -------KLGIISGIIKDYGSITHAKERLNHIKNELHNLEEIDNHCETHHKEIEQLKAEC 339

Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769
           +     I   + R E + G  A      +D  LKS +  L+ +  N     +++    + 
Sbjct: 340 LKLSEQIS--VFRKEHLAGFNALLSAKAKDLLLKSPSLILEEAPMN-SKGAQKLILNLQN 396

Query: 770 LQLIHAK----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ--SG 823
            QL         +L+L    L    + D   +  ++ E+DS        A+ K ++  S 
Sbjct: 397 SQLETLSSGEYSRLRLAFMLLEMEFLKDFKGV-LVLDEMDSNLSGEESLAVSKALETLSS 455

Query: 824 IIMLVGISKE------KKASVLIVVT--EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875
              +  IS +       K  +L+     + L    N+ +     A+++GG          
Sbjct: 456 HSQIFAISHQVHIPAVAKNHILVFKENHKSLAKTLNSEERVLEIARMIGG---------- 505

Query: 876 QSGGPNGNKADQAIAGVASFLK 897
                     + AI+     LK
Sbjct: 506 ------SENIESAISFAKEKLK 521


>gi|327264641|ref|XP_003217121.1| PREDICTED: myosin-10-like isoform 5 [Anolis carolinensis]
          Length = 2007

 Score = 38.5 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 20/206 (9%)

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +++L   E+   ++          I + E+ +          +     R +  E  D  
Sbjct: 1042 CTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKTRQ--ELEKSKRKLDGETTDLQ 1099

Query: 688  VHSSALCGGTHVSSTGEIMLLYI---VSESSIRAGIRR--IEAITGQRARSHLMGQDEKL 742
               + L          +I  L I     E  ++A I R   EA+    A   +     ++
Sbjct: 1100 DQIAEL--------QAQIEELKIQLAKKEEELQAAIARGDDEAVQKNNALKLIRELQAQI 1151

Query: 743  KSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMS 798
              L   L   K S+     +  ++ EE   L+             ++L   +  +V  + 
Sbjct: 1152 AELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1211

Query: 799  HIISEVDSKELKSVMDALQKKIQSGI 824
              + E ++K  +  +  ++++  + +
Sbjct: 1212 KALEE-ETKNHEVQIQDIRQRHATAL 1236


>gi|327264635|ref|XP_003217118.1| PREDICTED: myosin-10-like isoform 2 [Anolis carolinensis]
          Length = 1992

 Score = 38.5 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 20/206 (9%)

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +++L   E+   ++          I + E+ +          +     R +  E  D  
Sbjct: 1027 CTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKTRQ--ELEKSKRKLDGETTDLQ 1084

Query: 688  VHSSALCGGTHVSSTGEIMLLYI---VSESSIRAGIRR--IEAITGQRARSHLMGQDEKL 742
               + L          +I  L I     E  ++A I R   EA+    A   +     ++
Sbjct: 1085 DQIAEL--------QAQIEELKIQLAKKEEELQAAIARGDDEAVQKNNALKLIRELQAQI 1136

Query: 743  KSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMS 798
              L   L   K S+     +  ++ EE   L+             ++L   +  +V  + 
Sbjct: 1137 AELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1196

Query: 799  HIISEVDSKELKSVMDALQKKIQSGI 824
              + E ++K  +  +  ++++  + +
Sbjct: 1197 KALEE-ETKNHEVQIQDIRQRHATAL 1221


>gi|302762258|ref|XP_002964551.1| hypothetical protein SELMODRAFT_405879 [Selaginella moellendorffii]
 gi|300168280|gb|EFJ34884.1| hypothetical protein SELMODRAFT_405879 [Selaginella moellendorffii]
          Length = 533

 Score = 38.5 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKE 808
           K  + NVV ++  + +E +  +   AK K +L + E+     + + N +  + SE     
Sbjct: 77  KAPKPNVVEKLAAVEQELKTAKNEIAKLKTELALSEEKWLQAVKEGNEIKKMASE----- 131

Query: 809 LKSVMDALQKKIQSGIIML 827
              + + +  K+ + +I +
Sbjct: 132 ---MANEMANKLDAAMIAV 147


>gi|327264643|ref|XP_003217122.1| PREDICTED: myosin-10-like isoform 6 [Anolis carolinensis]
          Length = 1997

 Score = 38.5 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 20/206 (9%)

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +++L   E+   ++          I + E+ +          +     R +  E  D  
Sbjct: 1032 CTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKTRQ--ELEKSKRKLDGETTDLQ 1089

Query: 688  VHSSALCGGTHVSSTGEIMLLYI---VSESSIRAGIRR--IEAITGQRARSHLMGQDEKL 742
               + L          +I  L I     E  ++A I R   EA+    A   +     ++
Sbjct: 1090 DQIAEL--------QAQIEELKIQLAKKEEELQAAIARGDDEAVQKNNALKLIRELQAQI 1141

Query: 743  KSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMS 798
              L   L   K S+     +  ++ EE   L+             ++L   +  +V  + 
Sbjct: 1142 AELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1201

Query: 799  HIISEVDSKELKSVMDALQKKIQSGI 824
              + E ++K  +  +  ++++  + +
Sbjct: 1202 KALEE-ETKNHEVQIQDIRQRHATAL 1226


>gi|312377384|gb|EFR24223.1| hypothetical protein AND_11330 [Anopheles darlingi]
          Length = 1457

 Score = 38.5 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-----IHAKRKLQLNVEDLSC- 788
           L  +D +L+     LK ++  V   V  +  E R  Q          RKL+  +++L   
Sbjct: 173 LTAKDAELEKHNLALKNAESEVDEHVAALQGELRAKQELLGESEKNLRKLEAEMDELRGD 232

Query: 789 ------HKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840
                         M  ++ E D+  ++LK  +  L++K+    +    + +E K +   
Sbjct: 233 LRQRDLKVAEGETGMKVVLQEKDATIEKLKQQVADLEQKLTIDTVARSTLEEELKVAKRA 292

Query: 841 VV 842
             
Sbjct: 293 AA 294


>gi|312144167|ref|YP_003995613.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp.
           'sapolanicus']
 gi|311904818|gb|ADQ15259.1| single-stranded-DNA-specific exonuclease RecJ [Halanaerobium sp.
           'sapolanicus']
          Length = 767

 Score = 38.5 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653
             +L    G H +  G  +  D L       K + + ELKS+E   N +I  +L V    
Sbjct: 399 CSSLLEKHGGHAAAAGFSLKKDRLEKFRLRLKRLINQELKSLEQ--NLVITTDLEVELAE 456

Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711
           +N E        A  G    + V    VE     ++S  L  G H           I 
Sbjct: 457 LNHEFYQKLRLFAPFGEANPEPVFYTEVEI----LNSRELSNGRHKKMVVSDGKDKIT 510


>gi|45382693|ref|NP_990808.1| myosin-9 [Gallus gallus]
 gi|127759|sp|P14105|MYH9_CHICK RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain,
            type A; AltName: Full=Myosin heavy chain 9; AltName:
            Full=Myosin heavy chain, non-muscle IIa; AltName:
            Full=Non-muscle myosin heavy chain A; Short=NMMHC-A;
            AltName: Full=Non-muscle myosin heavy chain IIa;
            Short=NMMHC II-a; Short=NMMHC-IIA
 gi|212383|gb|AAA48974.1| myosin heavy chain [Gallus gallus]
          Length = 1959

 Score = 38.5 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 16/167 (9%)

Query: 712  SESSIRAGIRRIEAITGQR--ARSHLMGQDEKLKSLASFL---KVSQGNVVGRVEEIWEE 766
             E  ++A + R+E    Q+  A   +   + ++  L   L   + S+     +  ++ EE
Sbjct: 1081 KEEELQAALARVEEEAAQKNMALKKIRELESQITELQEDLESERASRNKAEKQKRDLGEE 1140

Query: 767  YRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825
               L+             ++L   +  +V  +   + + ++K  ++ +  +++K    I 
Sbjct: 1141 LEALKTELEDTLDSTAAQQELRSKREQEVTVLKKTLED-EAKTHEAQIQEMRQKHSQAIE 1199

Query: 826  MLVGISKEKKASVLIVVTEDLLDRFNAVDLARL----SAKVLGGGGG 868
             L    ++ K      V  +L     A++  R       KVL  G G
Sbjct: 1200 ELAEQLEQTKR-----VKANLEKAKQALESERAELSNEVKVLLQGKG 1241


>gi|255073843|ref|XP_002500596.1| p-type ATPase superfamily [Micromonas sp. RCC299]
 gi|226515859|gb|ACO61854.1| p-type ATPase superfamily [Micromonas sp. RCC299]
          Length = 505

 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 20/155 (12%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLN- 782
           A+T  RA   +   +++L  LA   +    + +GR +       RKL  I     +    
Sbjct: 174 AVTAVRAFDAIRADEDRLLWLAGSAETGSEHPIGRAIVAAASSGRKLSTIQDFEAVAGRG 233

Query: 783 -----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG---IIMLVGISKEK 834
                VED S   + +V FMS   + VD     ++++A++++ + G    ++  G+++  
Sbjct: 234 LRCRLVEDGSSVLVGNVRFMSE--NGVDM--TPAMLEAVREEEEKGQTVAVVHAGVAQGG 289

Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869
           K   L+ V++ +    +A      +   L G G G
Sbjct: 290 KPLGLVCVSDPVRPEASA------AVAALTGRGVG 318


>gi|91774252|ref|YP_566944.1| phosphoesterase, RecJ-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91713267|gb|ABE53194.1| Single-stranded DNA-specific exonuclease RecJ-like phosphoesterase
           [Methanococcoides burtonii DSM 6242]
          Length = 437

 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 12/139 (8%)

Query: 764 WEEYRKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
            +E +++     K  +  +N  +    K   +    + +   D +    +   + + I  
Sbjct: 304 LDEAKEMTTQSQKAIVNDINKAEGLLQKGKSI----YYLIGDDLESTGMIASTVIRYIHP 359

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA---RLSAKVLGGGGGGGRPHMAQSGG 879
            +  +     E K  +    T +L+     +DLA   R +A  +GG GGG   ++A    
Sbjct: 360 DMPFVAINKVEGKVKISSRGTRELVS--KGLDLAYAMRTAADAVGGQGGG--HNIASGAS 415

Query: 880 PNGNKADQAIAGVASFLKK 898
               K ++ IA V   + +
Sbjct: 416 VEPEKIEEFIALVDDIVAE 434


>gi|163852678|ref|YP_001640721.1| cytochrome c oxidase, subunit II [Methylobacterium extorquens PA1]
 gi|218531519|ref|YP_002422335.1| cytochrome C oxidase subunit II [Methylobacterium chloromethanicum
           CM4]
 gi|240140011|ref|YP_002964488.1| cytochrome c oxidase subunit II [Methylobacterium extorquens AM1]
 gi|254562438|ref|YP_003069533.1| cytochrome C oxidase subunit II [Methylobacterium extorquens DM4]
 gi|163664283|gb|ABY31650.1| cytochrome c oxidase, subunit II [Methylobacterium extorquens PA1]
 gi|218523822|gb|ACK84407.1| cytochrome c oxidase, subunit II [Methylobacterium chloromethanicum
           CM4]
 gi|240009985|gb|ACS41211.1| cytochrome c oxidase subunit II [Methylobacterium extorquens AM1]
 gi|254269716|emb|CAX25688.1| cytochrome c oxidase subunit II [Methylobacterium extorquens DM4]
          Length = 279

 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 11/144 (7%)

Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663
           H          +G +   T    +   +   +    ND++     VV   +  +D I S 
Sbjct: 140 HAWYWSYVYPAEGDKGGFTFDANVDEEQQPKLLATDNDMVIPVGKVVKVQVTSDDVIHSW 199

Query: 664 AAALLGTK---YNDRVRVVSVEYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSESSIR 717
           A    G K      R+     + +  G +    S LCG  H       + + +VSE +  
Sbjct: 200 AIPSFGGKIDAIPGRLNQWWFKADREGTYHGQCSELCGARH---AYMPITVRVVSEQAYA 256

Query: 718 AGIRRIEAITGQRARSHLMGQDEK 741
                 EA T   A  +     + 
Sbjct: 257 D--WLTEAKTKYAAIDNGARLADA 278


>gi|195942383|ref|ZP_03087765.1| hypothetical protein Bbur8_05979 [Borrelia burgdorferi 80a]
          Length = 2077

 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG----GGGGGR- 871
           +    +  I+L G++K+ K +        ++    A    +   K +      G GGG  
Sbjct: 144 KNDQIAAAIVLRGLAKDGKFANANAANTKVVAAKKASGWIKEMHKAVEDTAKAGTGGGES 203

Query: 872 -PHMAQSGGPNGNKADQA 888
             ++A  GG N     +A
Sbjct: 204 IANVATGGGDNAGAGKKA 221


>gi|327264639|ref|XP_003217120.1| PREDICTED: myosin-10-like isoform 4 [Anolis carolinensis]
          Length = 1984

 Score = 38.1 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 20/206 (9%)

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +++L   E+   ++          I + E+ +          +     R +  E  D  
Sbjct: 1019 CTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKTRQ--ELEKSKRKLDGETTDLQ 1076

Query: 688  VHSSALCGGTHVSSTGEIMLLYI---VSESSIRAGIRR--IEAITGQRARSHLMGQDEKL 742
               + L          +I  L I     E  ++A I R   EA+    A   +     ++
Sbjct: 1077 DQIAEL--------QAQIEELKIQLAKKEEELQAAIARGDDEAVQKNNALKLIRELQAQI 1128

Query: 743  KSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMS 798
              L   L   K S+     +  ++ EE   L+             ++L   +  +V  + 
Sbjct: 1129 AELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1188

Query: 799  HIISEVDSKELKSVMDALQKKIQSGI 824
              + E ++K  +  +  ++++  + +
Sbjct: 1189 KALEE-ETKNHEVQIQDIRQRHATAL 1213


>gi|327264637|ref|XP_003217119.1| PREDICTED: myosin-10-like isoform 3 [Anolis carolinensis]
          Length = 1986

 Score = 38.1 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 20/206 (9%)

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +++L   E+   ++          I + E+ +          +     R +  E  D  
Sbjct: 1021 CTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKTRQ--ELEKSKRKLDGETTDLQ 1078

Query: 688  VHSSALCGGTHVSSTGEIMLLYI---VSESSIRAGIRR--IEAITGQRARSHLMGQDEKL 742
               + L          +I  L I     E  ++A I R   EA+    A   +     ++
Sbjct: 1079 DQIAEL--------QAQIEELKIQLAKKEEELQAAIARGDDEAVQKNNALKLIRELQAQI 1130

Query: 743  KSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMS 798
              L   L   K S+     +  ++ EE   L+             ++L   +  +V  + 
Sbjct: 1131 AELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1190

Query: 799  HIISEVDSKELKSVMDALQKKIQSGI 824
              + E ++K  +  +  ++++  + +
Sbjct: 1191 KALEE-ETKNHEVQIQDIRQRHATAL 1215


>gi|256028172|ref|ZP_05442006.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289766105|ref|ZP_06525483.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11]
 gi|289717660|gb|EFD81672.1| cysteinyl-tRNA synthetase [Fusobacterium sp. D11]
          Length = 472

 Score = 38.1 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 22/155 (14%)

Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG------------ 719
           +   + ++   +E+    S   CGGT          + I  E   ++G            
Sbjct: 225 HGGGLDLIFPHHENEMAQSKCACGGTFARYWMHNGYIKINGEKMSKSGSFVLLRDILKHF 284

Query: 720 ---IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQ 771
              + R+  + G   R  +   DE+L    S L+    N + R++E+  E  K      +
Sbjct: 285 EGRVIRL-FVLGSHYRKPMDFSDEELNQTKSSLE-RIENTLKRIKELDRENIKGTDDCQE 342

Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           L+  K++++    +           + HI   V +
Sbjct: 343 LLATKKEMEAKFIEAMDEDFNTAQALGHIFELVKA 377


>gi|295402610|ref|ZP_06812557.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110974|ref|YP_003989290.1| hypothetical protein GY4MC1_1924 [Geobacillus sp. Y4.1MC1]
 gi|294975360|gb|EFG50991.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216075|gb|ADP74679.1| hypothetical protein GY4MC1_1924 [Geobacillus sp. Y4.1MC1]
          Length = 1461

 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 735 LMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD 793
           +   ++ +KS+A  L   Q  V+ + +E + EE  + +   AK    +N      ++  +
Sbjct: 441 VKEIEDSIKSIAENLDTKQIEVLNKNIERLKEELHQTKRNIAKINTMINKAAEIENEKKN 500

Query: 794 VNFM 797
           +N +
Sbjct: 501 INGV 504


>gi|114566628|ref|YP_753782.1| uridine kinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337563|gb|ABI68411.1| uridine kinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 557

 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 41/256 (16%)

Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651
           LL  A   +    V      ++ +GL  +   ++   + E+++IE  + +I+  NLP+  
Sbjct: 87  LLMKAARDLFPERVLTVKHSLS-NGLLCEF-LNEDSRTEEIEAIEKRMQEIVEDNLPIRR 144

Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSSTGEIMLLYI 710
             +N+E A           +  +  +V  + Y D   V    L G        E   +++
Sbjct: 145 MRINKEKAQEIFR------EQGEEDKVKLLAYRDVDEVQVCELDG------FYENFYIFM 192

Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770
           + E+ +    R  E   G                    L+  + +    +    E+ +KL
Sbjct: 193 LPETGMLKKFRLFEYPPGM------------------ILQTPELSAPNSLRPYVEQ-KKL 233

Query: 771 QLIHAKRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
             I  + K                  +  D+N +  +   +  K++  + D +       
Sbjct: 234 ASIFQEAKNWAEMLGTPHVAALDDIIEHGDINDIIRVNEALHEKKIAFIADQICCDEDIR 293

Query: 824 IIMLVGISKEKKASVL 839
           ++++ G S   K +  
Sbjct: 294 LVLISGPSSSGKTTFA 309


>gi|327264633|ref|XP_003217117.1| PREDICTED: myosin-10-like isoform 1 [Anolis carolinensis]
          Length = 1976

 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 69/206 (33%), Gaps = 20/206 (9%)

Query: 628  TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687
             +++L   E+   ++          I + E+ +          +     R +  E  D  
Sbjct: 1011 CTSQLAEEEEKAKNLTKLKNKQEMMITDLEERLKKEEKTRQ--ELEKSKRKLDGETTDLQ 1068

Query: 688  VHSSALCGGTHVSSTGEIMLLYI---VSESSIRAGIRR--IEAITGQRARSHLMGQDEKL 742
               + L          +I  L I     E  ++A I R   EA+    A   +     ++
Sbjct: 1069 DQIAEL--------QAQIEELKIQLAKKEEELQAAIARGDDEAVQKNNALKLIRELQAQI 1120

Query: 743  KSLASFL---KVSQGNVVGRVEEIWEEYRKLQLIHA-KRKLQLNVEDLSCHKIADVNFMS 798
              L   L   K S+     +  ++ EE   L+             ++L   +  +V  + 
Sbjct: 1121 AELQEDLESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELK 1180

Query: 799  HIISEVDSKELKSVMDALQKKIQSGI 824
              + E ++K  +  +  ++++  + +
Sbjct: 1181 KALEE-ETKNHEVQIQDIRQRHATAL 1205


>gi|126310557|ref|XP_001375923.1| PREDICTED: similar to KIAA1009 protein [Monodelphis domestica]
          Length = 1445

 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q A  +  G    ++ + +     Q  +  +++E+ E+ ++ +L    +   +    L+ 
Sbjct: 652 QEAEENWSGAQALIEQIKATFSDKQKELENKIQELKEQ-KEKELFRVNQDNYILQAKLNS 710

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            + A+         E  S   +  +  ++K+IQ    +L G  +E 
Sbjct: 711 FEEANKKLKWFDAEEAASLISEEKIKQIRKEIQEQETLLQGYQQEN 756


>gi|326803886|ref|YP_004321704.1| chromosome segregation protein SMC [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650714|gb|AEA00897.1| chromosome segregation protein SMC [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 1186

 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 99/299 (33%), Gaps = 19/299 (6%)

Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRV 274
              + ++ +DTG+G E  + + Q K         +      E+  G+ KY+       R 
Sbjct: 121 LKDITQLMMDTGVGKESFSIISQGKVEEIFTQRAEERRAIFEEAAGVMKYKSKKQEAERK 180

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           + D  + +   I D IL   EGR   L+     A+ Y         + + L         
Sbjct: 181 L-DRSQENLNRIED-ILSEIEGRLEPLKEQKEAAVSYRDKKQELSQIEIALTAVQIET-- 236

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
                L +   L ++ L S  +   +   R L   +  L+     E  + D    L D +
Sbjct: 237 -----LNEQWQLAKQDLES-IQASNEAKKRQLDKEETALAQAKVAEEQSDDRVNDLNDNY 290

Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK---EK 451
                +++     +  + + ++   Q   +   +++           EK+   LK    +
Sbjct: 291 -----VVKLQAVEKLRSQLQMMEQEQRFIQSNRQSQEKEQANLQAKIEKMKTDLKSNQAQ 345

Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510
               Q          + +K+    L      DL +  +  +  + ++  +  +    +K
Sbjct: 346 LDKYQKTYQSQADSYQSLKDQLAALSDYSQEDLEDLRNQYIAYLQEESHLSNQIQQTEK 404


>gi|229918283|ref|YP_002886929.1| peptidase M23 [Exiguobacterium sp. AT1b]
 gi|229469712|gb|ACQ71484.1| Peptidase M23 [Exiguobacterium sp. AT1b]
          Length = 431

 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           Q+         EKL    + LK  + ++V + E++ +  ++L      +K++     +  
Sbjct: 162 QQIFEEYEATKEKLAKAQADLKAERDSLVKQKEDLEKRQKELD-----QKMKERAAKIKK 216

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
            +   V F S ++S      L+ + D L+ + Q
Sbjct: 217 LEAEKVKFESKLMS------LQEMEDTLKAQEQ 243


>gi|302393050|ref|YP_003828870.1| adenylosuccinate lyase [Acetohalobium arabaticum DSM 5501]
 gi|302205127|gb|ADL13805.1| Adenylosuccinate lyase [Acetohalobium arabaticum DSM 5501]
          Length = 431

 Score = 38.1 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407
            E + SE+ +F K LD  L + +     L +   +  +   ++ D     +D +++I   
Sbjct: 10  MEEIWSEENKFNKWLDIELAVCEA----LAEVGQIPDEDVAEMKDKADFTVDRIKEIEQE 65

Query: 408 RGLAGIDIISFNQALEEQ-RSRARAHSLGLGSGTTEKIWFSLKEKYGA 454
                 D+++F  A+ E     ++   LGL S   +    SL+ K  A
Sbjct: 66  ---TKHDVLAFLTAVAESLGEESKYIHLGLTSSDIKDTARSLQLKESA 110


>gi|299753057|ref|XP_001833035.2| kinesin [Coprinopsis cinerea okayama7#130]
 gi|298410124|gb|EAU88724.2| kinesin [Coprinopsis cinerea okayama7#130]
          Length = 2005

 Score = 38.1 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 22/144 (15%)

Query: 698  HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH----LMGQDEKLKSLASFLKVSQ 753
            HV+   E+  L I  E+++RA    +EA+  Q    H       + +   ++AS L    
Sbjct: 1135 HVA---EMEELRIAHETALRAKAEEVEALVAQMKEEHTSSLAAIRADHEAAIASALSAKG 1191

Query: 754  GNVVGRVEEIWEEYRK------LQLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISE 803
             +V  RV  + EE++        +L  +   LQ   +D        K      +   + E
Sbjct: 1192 ADVEERVARMVEEHQASVTALRAELEASTAALQKARDDHEAAFGLLKEEHEKALQRQVEE 1251

Query: 804  VDSKELKSVMDALQKKIQSGIIML 827
                  K++++  + + +  +  L
Sbjct: 1252 A-----KAMLEETKDQHEKALAKL 1270


>gi|289622727|emb|CBI50996.1| unnamed protein product [Sordaria macrospora]
          Length = 1436

 Score = 38.1 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 58/137 (42%), Gaps = 22/137 (16%)

Query: 729 QRARSHLMGQDEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
           Q+    L  + +  +++ + LK    S   +  R+E++ EE    +   AK K + +  +
Sbjct: 585 QKRIDELTEETKSQEAIIAKLKKETASAEELQKRIEQLTEENTTYEATLAKLKEETSAAE 644

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQ------KKIQSGIIMLVGISKEKKASVL 839
               +I ++        E ++K+ ++ +  L+       ++Q  I  L   SK+ +A++ 
Sbjct: 645 DLQKRIQEL--------EAEAKDKEATIAQLKDTTTGSDELQKRIDELSNDSKDNEATIT 696

Query: 840 -----IVVTEDLLDRFN 851
                +   E+L  R  
Sbjct: 697 QLKEEVAAAEELQKRIQ 713


>gi|253734741|ref|ZP_04868906.1| non-ribosomal peptide synthetase [Staphylococcus aureus subsp. aureus
            TCH130]
 gi|253727220|gb|EES95949.1| non-ribosomal peptide synthetase [Staphylococcus aureus subsp. aureus
            TCH130]
          Length = 2397

 Score = 38.1 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 112/311 (36%), Gaps = 26/311 (8%)

Query: 554  FVHHAIVERGILRTEMSLVL----TIDYQNRRQLSINHSAT----HLLHHALSTILGSHV 605
            F+  + + + + R+   + L     IDY  R+   +           + HAL  I G + 
Sbjct: 775  FIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEIEHALERIQGINK 834

Query: 606  SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI----- 660
            +        D  ++ V + + + +     I+  +  +      +    M+ E        
Sbjct: 835  AVVIVQNH-DQDQYIVAYYEAMHTLSHNKIKSQL-RMTLPEYMIPVNFMHIEQIPITING 892

Query: 661  ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG- 719
                 AL    Y D    V+   +   +         HV+  G     + +   S++A  
Sbjct: 893  KLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATL 952

Query: 720  -IRRIEAITGQR-ARSHLMGQDEKLKSLASFLKVSQGN---VVGRVEEIWEEYRKLQLIH 774
             + RIEA TG+R     L+ +    +   +  KV + N   +   + +         L  
Sbjct: 953  VVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVK-----DDYVLSS 1007

Query: 775  AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834
            A++++ L  +      + ++ F+  + SE++  +L+  +  L  + +      + +  E 
Sbjct: 1008 AQKRMYLLWKSNHKDTVYNIPFLWRLSSELNVAQLRQAVQHLIARHEILRTQYIVVDDEV 1067

Query: 835  KASVLIVVTED 845
            +  ++  V  D
Sbjct: 1068 RQRIVADVVAD 1078


>gi|14520284|ref|NP_125759.1| putative ss-DNA-specific exonuclease recj related [Pyrococcus
           abyssi GE5]
 gi|5457499|emb|CAB48990.1| recJ-like single-stranded exonuclease recJ homolog [Pyrococcus
           abyssi GE5]
          Length = 481

 Score = 38.1 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII 801
           L +L   + +       R  ++ EEY++ Q+   K  +Q    ++   +   V ++   I
Sbjct: 313 LGNLGVAVCLGDEEAFKRAMKMVEEYKREQIEARKWLIQNWNSEVWEGEHVYVLYVGKNI 372

Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV---TEDLLDRFNAVDLARL 858
            +       S+            +++   + E    +        + L   ++  +  + 
Sbjct: 373 RDTLVGIAASMAINAGLANPEKPVIVFADTDEDPNLIKGSARTTEKALEKGYHLGEALKK 432

Query: 859 SAKVLGGGGGG 869
           +A+++GG GGG
Sbjct: 433 AAEMIGGEGGG 443


>gi|225848145|ref|YP_002728308.1| MutS2 protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643785|gb|ACN98835.1| MutS2 protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 764

 Score = 38.1 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 11/140 (7%)

Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-----RKLQLNVED 785
           A+ ++     K + +AS L         +++E+    ++LQ    K     RKL+ + ++
Sbjct: 503 AKKYVEEDILKFQDMASNLSKMIAQYEEKIKEVEILKQQLQEEKQKYEELVRKLEQDRKE 562

Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845
                + D+      + E   + L+ V      K +     L    K KK  +  +  E+
Sbjct: 563 KWKESLKDIQDYIKNLKEEGYEILRQV------KEEKSGSKLEKFIKTKKLEIQTIGQEE 616

Query: 846 LLDRFNAVDLARLSAKVLGG 865
           +       D  RL  K   G
Sbjct: 617 VNQEIKEGDAVRLKGKAQKG 636


>gi|154248044|ref|YP_001419002.1| hypothetical protein Xaut_4123 [Xanthobacter autotrophicus Py2]
 gi|154162129|gb|ABS69345.1| hypothetical protein Xaut_4123 [Xanthobacter autotrophicus Py2]
          Length = 1411

 Score = 38.1 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 716 IRAGIRRIEAITGQ---RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           +   +RR  A  G    RA S     +  +++  S L+ +      R+  + +E R    
Sbjct: 231 VGQAVRREVAAMGDGVDRAISRAGELEAMVRAEVSILERAYEENEARIRSLIDELR---- 286

Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
            + +  +Q+  E L    ++    +S+ + +V S+   ++M+A        +  ++G   
Sbjct: 287 -NERHNIQIETERLREGIVSAEAVLSNEVKDVASRIHGTMMEA-----SEQVTEILGQKG 340

Query: 833 EKKASVLIVVTEDLLDRFNA--VDLA 856
           E   + L  V + ++D   A   +L 
Sbjct: 341 EHITAALARVGDSMIDGLTAKGGELI 366


>gi|317034806|ref|XP_001401215.2| kinesin family protein [Aspergillus niger CBS 513.88]
          Length = 1752

 Score = 38.1 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLS 787
              A   L  + E+ + L + LK              E+   L+  H + +LQL  +    
Sbjct: 1250 DAAARELEAEREQQEELVAKLKHVIDEHKATNAAHLEKIASLEKSHGEAQLQLSELLAAK 1309

Query: 788  CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
             +   +V      +SE+  +    KS+ D+ +K ++S
Sbjct: 1310 DNDSNEVQVHQSRVSELEKEIDSHKSLADSFKKDLES 1346


>gi|134081898|emb|CAK42153.1| unnamed protein product [Aspergillus niger]
          Length = 1750

 Score = 38.1 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 729  QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLS 787
              A   L  + E+ + L + LK              E+   L+  H + +LQL  +    
Sbjct: 1250 DAAARELEAEREQQEELVAKLKHVIDEHKATNAAHLEKIASLEKSHGEAQLQLSELLAAK 1309

Query: 788  CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822
             +   +V      +SE+  +    KS+ D+ +K ++S
Sbjct: 1310 DNDSNEVQVHQSRVSELEKEIDSHKSLADSFKKDLES 1346


>gi|183232281|ref|XP_655089.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802112|gb|EAL49712.2| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 1034

 Score = 38.1 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773
            S+  G  RI   T +          E++  ++  + V +  ++    +I E+ +++++ 
Sbjct: 94  ESVIKGYERIINSTQKEVEHKKGKLQEEVNKMSKDVTVMKQQLIDVESQIKEKIKEIEVS 153

Query: 774 HA---KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
                K++  L+V +    K  +   +     ++D    +++ +A ++KI+S
Sbjct: 154 QESINKQQTSLSVFEEQLKKNGEEKDIKLK-EQLDKDLRQTIQNAKKQKIKS 204


>gi|47523830|ref|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa]
 gi|3913046|sp|O46409|APOA4_PIG RecName: Full=Apolipoprotein A-IV; Short=Apo-AIV; Short=ApoA-IV;
           AltName: Full=Apolipoprotein A4; Flags: Precursor
 gi|2695742|emb|CAA11020.1| apolipoprotein A-IV [Sus scrofa]
          Length = 382

 Score = 38.1 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772
           ES +R  IR +EA     A       D+ ++ L   L      +  ++++  EE R+   
Sbjct: 165 ESVLRQNIRNLEASVAPYADEFKAKIDQNVEELKGSLTPYAEELKAKIDQNVEELRRSLA 224

Query: 773 IHAKRKLQLNVEDLSCHKIADVNF-MSHIISEVDSKELKSVMDALQKKI 820
            +A+     +V++   H++  + F M     E+ +K + +  D L++K+
Sbjct: 225 PYAQ-----DVQEKLNHQLEGLAFQMKKQAEELKAK-ISANADELRQKL 267


>gi|223985091|ref|ZP_03635187.1| hypothetical protein HOLDEFILI_02492 [Holdemania filiformis DSM
           12042]
 gi|223962913|gb|EEF67329.1| hypothetical protein HOLDEFILI_02492 [Holdemania filiformis DSM
           12042]
          Length = 539

 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 577 YQNRRQLSINHSATHLLHHAL---STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633
           +  R  L         L         +    +          GL   +   +P+T AEL+
Sbjct: 57  WITRGSLIGQMMTERTLSFLFITAVRLCFDGLDVLIEHSLAGGLYGTLIRKEPVTLAELE 116

Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671
            +E  + D+IA+  P+  R++++ +A+A   A  +  K
Sbjct: 117 QVEAKMRDMIAKKEPIHRRVVSKAEAVAHFEALGMPDK 154


>gi|38636442|emb|CAE81978.1| related to vesicular transport protein [Neurospora crassa]
          Length = 1150

 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------------QLIHAKR 777
           R +  L  +D++++ LA   K  + ++   +E + +  +++            +L   K+
Sbjct: 584 RLQEELADKDQRIERLAKQRKT-EEDLREEIENLQDSLKEIGFEHVETKQRLKELEQEKK 642

Query: 778 KLQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +L+  +++L    + A     ++I  + + + L+   D L++K Q
Sbjct: 643 ELKARIDELEKEVEAAASTAQTNIKLQSEHESLRQEFDDLKQKSQ 687


>gi|312868175|ref|ZP_07728378.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
           parasanguinis F0405]
 gi|311096303|gb|EFQ54544.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
           parasanguinis F0405]
          Length = 1279

 Score = 38.1 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 106/329 (32%), Gaps = 48/329 (14%)

Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607
           K+ +G+FVH+ +          +    +  + R        +      AL     S    
Sbjct: 53  KQVDGVFVHNGVAT-----VTKTPTSEVVEEARTIKEETDQSVSNQESALEDAKTSEAV- 106

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667
            GS ++ + +      +    SA  + IE   N+I      +  +  +++DA      A 
Sbjct: 107 AGSKVSKESVNLKNAEANK-ESATPEKIEKTKNEISEVKADIEKKETSQKDATDKVLEA- 164

Query: 668 LGTKYNDRVRVV-----SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722
              K N +  V+      +  ++  V ++     T   +        I++E         
Sbjct: 165 -EKKRNQQSEVIKKDQDKISEQEKKVSTAEEAVETAQKNLDGTGASEIIAER-------- 215

Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI------------------- 763
                  +A+S +  ++   +S    L+ +      + EE+                   
Sbjct: 216 ------DKAKSDVAEKESAEESAKKALENAISEDKNKAEELSKASADEKTQLSASQVSAK 269

Query: 764 -WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822
              + +K+    A   ++   E  +  K+ D   +  I++E D+ ++        +    
Sbjct: 270 QLADAKKVAEEAASALVKAQKEKETAQKVLDGTGVEEIVAERDAAKINLDAKTATENTAK 329

Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFN 851
             +     + +KKA+ L        D+  
Sbjct: 330 QELDRAKEADDKKATALKNAKSVETDQIK 358


>gi|51598847|ref|YP_073035.1| arginyl-tRNA synthetase [Borrelia garinii PBi]
 gi|81609888|sp|Q660S8|SYR_BORGA RecName: Full=Arginyl-tRNA synthetase; AltName: Full=Arginine--tRNA
           ligase; Short=ArgRS
 gi|51573418|gb|AAU07443.1| arginyl-tRNA synthetase [Borrelia garinii PBi]
          Length = 585

 Score = 38.1 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 101/307 (32%), Gaps = 31/307 (10%)

Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399
           + ++   I + + ++  +     DRG+ +   +L++      +  + AFK  D       
Sbjct: 143 IGESLSRILKAVGAKITKINLINDRGVHICKSMLAYKKFGNCITPEKAFKKGD------H 196

Query: 400 IMQDILCARGLAGIDIISFNQALEE---QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456
           ++ +          +  +  + +++   +  +   +++ L     +     +KE Y  T 
Sbjct: 197 LIGEFYVEYNKYSQENENAEKEIQDLLLKWEQKDKNTIELWEKLNKWAIEGIKETYKTTN 256

Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS--SIVKAIVQQGEIVEEAVSGQKVEVV 514
                +   S+  +  + V+ +             +I   +    +   EA + QKV + 
Sbjct: 257 ISFDKIYLESEIFEIGKNVVLEGLEKGFCYKREDGAICIDLPSDSDEKAEAKAKQKVLIR 316

Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
            + T  Y        D G            ++        + H    + +      L   
Sbjct: 317 SNGTSIYLTQ-----DLGNIAIRTKEFNFDEMIYVVGSEQIQHF---KNLFFVSEKL--- 365

Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
                   +S N    HL H  ++ I G   S+ G+ I  D L   +   + I     + 
Sbjct: 366 -------GISKNKQLIHLSHGMVNLIDGKMKSREGNVIDGDNL--ILELIESIMPEITQK 416

Query: 635 IEDNVND 641
           I++  N 
Sbjct: 417 IDNKENA 423


>gi|327357041|gb|EGE85898.1| hypothetical protein BDDG_08843 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 702

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 714 SSIRAGIRRIEAITG--QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771
            +IRA   R+EA     +  R+ L  Q  +LK+  + LK  Q  +  + E +  E +  +
Sbjct: 17  EAIRA---RLEAKQERLKAQRARLKAQRARLKAKQARLKAKQARLKAKQERLKAEQKYAE 73

Query: 772 LIHAKRKLQLNVE 784
                 +L+ N+ 
Sbjct: 74  EKERVDQLRANIA 86


>gi|313236539|emb|CBY11853.1| unnamed protein product [Oikopleura dioica]
          Length = 1129

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415
            +F  T          ++      + L GD+A   +   GL   ++Q I   +     D 
Sbjct: 694 NKFTSTFSSSADKKQQLIDQ---SKFLGGDLAHT-HLVKGLDYALLQKIRMEQNRKDEDE 749

Query: 416 ISFNQALEEQRSRARAHSLGLGS 438
            +  +AL+EQ++++         
Sbjct: 750 AAIEEALQEQKAKSDRRLTDKED 772


>gi|6606244|gb|AAF19136.1|AF143471_1 BdrC4 [Borrelia hermsii]
          Length = 202

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
             G   +S +   D K+ ++ + LK    ++  +++ + E    +++ + + +L+ +++D
Sbjct: 57  KVGASLKSDIKDLDNKIDNVRNELKSDIKDLDNKIDTV-ENNLNIKIDNVRNELKSDIKD 115

Query: 786 LSCHKIADVNFMSHIISEV------DSKELKSVMDALQKKIQSGI 824
           L     A  N ++  I  V      D K+L + +D ++ +++S I
Sbjct: 116 LDNKIDAVENNLNIKIDNVRNELKSDIKDLDNKIDNVRNELKSDI 160


>gi|291533302|emb|CBL06415.1| Threonyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 133

 Score = 38.1 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 576 DYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAELKS 634
           D   R  L   HSA+H+L  A+  + G  +V         +G  +D      +++ +L  
Sbjct: 64  DEDGRWALR--HSASHILAQAVKRLYGDKNVKLAIGPAIDNGFYYDFDMDHQLSTEDLAK 121

Query: 635 I 635
           I
Sbjct: 122 I 122


>gi|225850125|ref|YP_002730359.1| glycyl-tRNA synthetase subunit alpha [Persephonella marina EX-H1]
 gi|225645944|gb|ACO04130.1| glycyl-tRNA synthetase, alpha subunit [Persephonella marina EX-H1]
          Length = 301

 Score = 38.1 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDI 246
            LP +S++   GLER+AT LQ   + YDI
Sbjct: 156 DLPVISVEITYGLERIATYLQGVDSVYDI 184


>gi|224109652|ref|XP_002315267.1| predicted protein [Populus trichocarpa]
 gi|222864307|gb|EEF01438.1| predicted protein [Populus trichocarpa]
          Length = 772

 Score = 38.1 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 735 LMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHK 790
           ++  +E   +L   +K  ++  +  RVE++ +E  +L+   A ++ Q N      +   +
Sbjct: 609 VLRAEELETALMEMVKQDNRRQLSARVEQLDQEVSELRRALADKQEQENAMLQVLMRVEQ 668

Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850
              V   + I +E D+   +     LQ+K +     L  +++ +K  V+     +   ++
Sbjct: 669 EQKVTEDARIYAEQDASAQRFAAQVLQEKYEQA---LASLAEMEKRMVMAESMLEATLQY 725

Query: 851 NAVDL 855
            +  L
Sbjct: 726 QSGQL 730


>gi|229917181|ref|YP_002885827.1| peptidase M23 [Exiguobacterium sp. AT1b]
 gi|229468610|gb|ACQ70382.1| Peptidase M23 [Exiguobacterium sp. AT1b]
          Length = 498

 Score = 38.1 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 62/173 (35%), Gaps = 18/173 (10%)

Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692
             ++D +ND+  +   +    M  ED  A         K   +  ++        + +  
Sbjct: 76  AQLQDIINDVAMKRQEIKRTEMKIEDLEAD--IKDYQEKMKAQEAMMK-----ERMATMQ 128

Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRR-IEAITGQRARSHLMGQDEKLKSLASFLKV 751
             GG    S        I    ++   + R I A T QR+   L    E  +     LK 
Sbjct: 129 KNGG---GSINWAEF--IFGSKNLSDLVTRMITAGTIQRSDQELFDDYEATQR---SLKE 180

Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI--ADVNFMSHIIS 802
           +Q ++      + ++ + L++  A+ + ++   +    ++   ++ F S I  
Sbjct: 181 AQADLKAERASLLQQQKALEVRQAELEKKMKQREKRIKELEEKNIKFESQIFD 233


>gi|157133339|ref|XP_001656209.1| hypothetical protein AaeL_AAEL002981 [Aedes aegypti]
 gi|108881546|gb|EAT45771.1| conserved hypothetical protein [Aedes aegypti]
          Length = 558

 Score = 38.1 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKI 791
             +  + EK++ + + LK  Q +   +V ++  + ++ Q   A+ K +    ++   +++
Sbjct: 295 QRVNEEMEKIEDINNRLKNLQVDTDKKVSDLENQLKEAQKEAAEFKTKNEQLEIDIRNQV 354

Query: 792 ADVNFMSHIISEVD 805
           A ++ M   ISE D
Sbjct: 355 AKISVMESTISEKD 368


>gi|321252373|ref|XP_003192384.1| tubulin binding protein [Cryptococcus gattii WM276]
 gi|317458852|gb|ADV20597.1| Tubulin binding protein, putative [Cryptococcus gattii WM276]
          Length = 2164

 Score = 38.1 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 22/227 (9%)

Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669
           S IT D LR  ++      S++L+ +     +I+ Q   +  RI   ED    G A    
Sbjct: 45  SEITADALRSHLSSLLEQKSSQLQMLGTMGQEILKQQQELEERIRGFEDEEMEGDAIREE 104

Query: 670 TKYNDRVRVVSVEYEDGGVHSSAL-CGGTH----VSSTGEIMLLYIVSESSIRAGIRRIE 724
           TK   R    +++  +          GG H    +    EI    +V        +RR++
Sbjct: 105 TKDKLRELDEAMKSWENQNEDMMKELGGKHRQLDMEFATEIGQNLLVE-------VRRLQ 157

Query: 725 AITGQR--ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQ 780
           A+  +R  A   L  + E  +  +  L V+       V+   EE   L+  L   +  + 
Sbjct: 158 ALLSERDRALEKLSEEKETWEQESQSLLVAVRTAESSVDRYKEENWNLEVNLQELRSSVA 217

Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827
              + L+            ++S       +   +A + + +  + ++
Sbjct: 218 DMQDQLAKANAEQARLQKTLVSS------REAAEAYKTEAEKNVQVI 258


>gi|206599732|ref|YP_002241921.1| gp26 [Mycobacterium phage Gumball]
 gi|206282946|gb|ACI06400.1| gp26 [Mycobacterium phage Gumball]
          Length = 1590

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDLS 787
           +RA       +++LK +    K ++  +   +E+    + + LQL   ++K + +VE  +
Sbjct: 82  ERAAIERRKAEKELKEILDAGKATEEEIQKAIEKTNKAKGKALQLAKERKKAERDVERAA 141

Query: 788 C 788
            
Sbjct: 142 A 142


>gi|189237907|ref|XP_969118.2| PREDICTED: similar to GA18707-PA [Tribolium castaneum]
          Length = 4912

 Score = 38.1 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 735  LMGQDEKLKSLASFLKVSQGN---VVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDLSC 788
            L  ++ + + L   LK +Q +   +  +V E+    +K Q       KR  +L  +    
Sbjct: 2075 LEKEEARARDLEDKLKKAQDDNDGLRKKVNELENSLKKCQDGNEDLKKRIAELKAQGDIL 2134

Query: 789  HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             K A    ++ I    D   +K++   L K+ +    M+  + +
Sbjct: 2135 KKKAIEQEIAQIPVGEDGDRVKALEAELAKRKKECDDMIASLKE 2178


>gi|313213524|emb|CBY40476.1| unnamed protein product [Oikopleura dioica]
          Length = 556

 Score = 38.1 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467
           RG+ G+D+     A+                      W +     GA+ F   +    S+
Sbjct: 193 RGI-GVDLNRNYDAM----------WRLGDPMVGASKWCTDDSYQGASAFSEPETKEHSE 241

Query: 468 FMKE---DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD-------- 516
           ++     +  +        +    +  + A      +V E   G +  ++ +        
Sbjct: 242 YILSVMPEAYLTMHSYAEVILFPYTYAIDAPRPHNYLVYEISEGNRCVLILETVYRWTYG 301

Query: 517 --QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574
             +T FY  AGG   D     G  I   +    K   G  V  + +ER +  T   +   
Sbjct: 302 QGRTIFYPAAGGS-DDWAHKNGINISYTLELRDKGRFGFVVPDSYLERTMKETAAGVSAV 360

Query: 575 IDYQNRRQ 582
            D+  R  
Sbjct: 361 YDHVTRHD 368


>gi|206599646|ref|YP_002241525.1| gp27 [Mycobacterium phage Butterscotch]
 gi|206282828|gb|ACI06315.1| gp27 [Mycobacterium phage Butterscotch]
          Length = 1590

 Score = 37.7 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDLS 787
           +RA       +++LK +    K ++  +   +E+    + + LQL   ++K + +VE  +
Sbjct: 82  ERAAIERRKAEKELKEILDAGKATEEEIQKAIEKTNKAKGKALQLAKERKKAERDVERAA 141

Query: 788 C 788
            
Sbjct: 142 A 142


>gi|150865547|ref|XP_001384811.2| hypothetical protein PICST_32134 [Scheffersomyces stipitis CBS
           6054]
 gi|149386803|gb|ABN66782.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 575

 Score = 37.7 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 729 QRARSHLMGQDEKLK-SLASFLKVSQGNVVGRVEEIWEEYRK-LQLIHAKRKLQLNVEDL 786
           ++A      + E+ K +L   +K  Q  +  ++E+   E +K ++   A+ + QL  E  
Sbjct: 138 KKALHETKEEVEREKIALRERIKKEQAELREQIEKEQAEKKKQIEREQAELREQLAREQA 197

Query: 787 SCHKIA----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842
           +   +     DV  + HI  + D + L   +      I+  I  L+    EK        
Sbjct: 198 TLKDVKQYHRDVYELKHIFPDHDFEVLNQQLQLSNGDIEVAIHKLLEGVPEKYVPPPTAE 257

Query: 843 TEDLLDRFN 851
             +   + N
Sbjct: 258 IPNATIKKN 266


>gi|109522595|ref|YP_655407.1| gp28 [Mycobacterium phage PLot]
 gi|88910702|gb|ABD58627.1| gp28 [Mycobacterium phage PLot]
          Length = 1590

 Score = 37.7 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDLS 787
           +RA       +++LK +    K ++  +   +E+    + + LQL   ++K + +VE  +
Sbjct: 82  ERAAIERRKAEKELKEILDAGKATEEEIQKAIEKTNKAKGKALQLAKERKKAERDVERAA 141

Query: 788 C 788
            
Sbjct: 142 A 142


>gi|109522803|ref|YP_655223.1| gp27 [Mycobacterium phage PBI1]
 gi|189043180|ref|YP_001936119.1| gp28 [Mycobacterium phage Adjutor]
 gi|206599822|ref|YP_002241441.1| gp27 [Mycobacterium phage Troll4]
 gi|88910516|gb|ABD58443.1| gp27 [Mycobacterium phage PBI1]
 gi|188090831|gb|ACD49613.1| gp28 [Mycobacterium phage Adjutor]
 gi|206283064|gb|ACI06489.1| gp27 [Mycobacterium phage Troll4]
          Length = 1590

 Score = 37.7 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI-WEEYRKLQLIHAKRKLQLNVEDLS 787
           +RA       +++LK +    K ++  +   +E+    + + LQL   ++K + +VE  +
Sbjct: 82  ERAAIERRKAEKELKEILDAGKATEEEIQKAIEKTNKAKGKALQLAKERKKAERDVERAA 141

Query: 788 C 788
            
Sbjct: 142 A 142


>gi|261880449|ref|ZP_06006876.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
 gi|270332786|gb|EFA43572.1| threonine-tRNA ligase [Prevotella bergensis DSM 17361]
          Length = 136

 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623
            +  + S+ L     +  + +  H++ HLL  AL  +        G  I  +G  +DV  
Sbjct: 50  PINEDSSITLYKFDDDEGKHTFWHTSAHLLAEALKELYPGIQFGFGPAI-ENGFFYDVMP 108

Query: 624 SK--PITSAELKSIEDNVNDIIAQNLPV 649
           ++   I+  +   IE  + ++  ++ PV
Sbjct: 109 AEGQTISENDFPRIEAKMRELAKKDEPV 136


>gi|85118791|ref|XP_965509.1| hypothetical protein NCU01878 [Neurospora crassa OR74A]
 gi|28927319|gb|EAA36273.1| predicted protein [Neurospora crassa OR74A]
          Length = 1120

 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------------QLIHAKR 777
           R +  L  +D++++ LA   K  + ++   +E + +  +++            +L   K+
Sbjct: 570 RLQEELADKDQRIERLAKQRKT-EEDLREEIENLQDSLKEIGFEHVETKQRLKELEQEKK 628

Query: 778 KLQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821
           +L+  +++L    + A     ++I  + + + L+   D L++K Q
Sbjct: 629 ELKARIDELEKEVEAAASTAQTNIKLQSEHESLRQEFDDLKQKSQ 673


>gi|289616807|emb|CBI56470.1| unnamed protein product [Sordaria macrospora]
          Length = 2426

 Score = 37.7 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 713  ESSIRAGIRR-IEAITGQRARS--HLMGQDEKLKSLASF-------LKVSQGNVVGRVEE 762
            E  I   +RR IE     +A    H   +  KLK  A         LKV Q   +   ++
Sbjct: 1651 EERITEELRRQIEEEARLQAEKEWHAKEEQRKLKEAAQQEEARRIALKVKQKAELEAKQK 1710

Query: 763  IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795
               E ++L  + AKRK + + +     K+A+  
Sbjct: 1711 TELEVKRLVEVEAKRKAEEDRKAEQKRKVAEAK 1743


>gi|299472643|emb|CBN78295.1| Tryptophan--tRNA ligase [Ectocarpus siliculosus]
          Length = 609

 Score = 37.7 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHV--SQNGSCITP-DGLRFDVTHSKPITS- 629
           T+D   R       +A  ++  AL  ++G  +  S  GS I+  +  R  V   K     
Sbjct: 4   TVDP--RTPTMT--TALEIVKGALCAVIGFPIGKSTIGSRISEGNKARITVKTGKAEAPT 59

Query: 630 -AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGG 687
            A+++ + D VN+ IA++       M R+DA ++  +A+    +   +V  +S+ Y +G 
Sbjct: 60  AAQMQKVVDVVNEAIAKDQACFRLTMPRKDAESTYGSAMYDVVEPPAQVEELSLLYIEGL 119

Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSE 713
           V  S L     + STG +  + +  +
Sbjct: 120 VLHSQLHPC--LPSTGPVGKVSVTKQ 143


>gi|301769005|ref|XP_002919934.1| PREDICTED: fas-binding factor 1-like [Ailuropoda melanoleuca]
          Length = 1155

 Score = 37.7 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 37/210 (17%)

Query: 618  RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677
            R D+   +      +  +E  +N+     L      +  E + A      L  +    V+
Sbjct: 815  RRDMEEERSHLQEVIGKMEARLNEQSRL-LEQERWRVTAEQSKAESMQRALEEQRKIMVQ 873

Query: 678  VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI-----EAITGQRAR 732
             +S+E E+     SAL          +  +++   E       RR+     E    Q+  
Sbjct: 874  QISMEREELEKAKSAL-------LEEQKSVMHKCGEER-----RRLAAEWAEFYAQQKLS 921

Query: 733  SHLM------------GQDEKLKSLA---SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777
                             ++  L SLA   + LK+    +  + E++  E   L+    + 
Sbjct: 922  KERAEREAERALQMDSQREGTLVSLAKEQAELKIRASELRAKEEQLAAEREALERERQEL 981

Query: 778  KLQLN---VEDLSCH-KIADVNFMSHIISE 803
            +L+        L    +  +V  MS + SE
Sbjct: 982  RLEKERVSAAALRTRLRAQEVESMSQVASE 1011


>gi|289622081|emb|CBI51259.1| putative ZIP1 protein [Sordaria macrospora]
          Length = 4070

 Score = 37.7 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 20/208 (9%)

Query: 625  KPITSAELKSIEDNVNDI--IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682
            +     EL ++    N+   IA       + ++ E A    A A    + +     ++  
Sbjct: 1282 EAQHKTELDNLTKRFNEKNKIADQYQQCVQELSAELADKKMALAESKEQLSASQAQLTKL 1341

Query: 683  YEDGGVHSSALCGG-----THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737
              D GV S  L G        V++  E     I    +   G    E  +          
Sbjct: 1342 TADHGVKSDDLQGKLKSEIARVTADYEG---KISELKTKHQG----EFTS----LKDSHQ 1390

Query: 738  QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797
            ++  +K +    K    N+  R+ +I  E ++ +    K+K QL  E  +     D    
Sbjct: 1391 KE--IKKMTEEHKKKIENLEHRINDIKTELKQDRAEFDKKKAQLEGEVATLQGKVDDKSA 1448

Query: 798  SHIISEVDSKELKSVMDALQKKIQSGII 825
                 E +  ELK + +A   K++  + 
Sbjct: 1449 KLSAKEAEFDELKKLNEAELAKLKKDVA 1476


>gi|194015572|ref|ZP_03054188.1| scaffold protein, putative [Bacillus pumilus ATCC 7061]
 gi|194012976|gb|EDW22542.1| scaffold protein, putative [Bacillus pumilus ATCC 7061]
          Length = 227

 Score = 37.7 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 11/147 (7%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI-HAKRKLQLNVEDLS 787
           +RA S     D   + L+++ K  Q      + E+    ++L+    A++ L   +EDL 
Sbjct: 53  KRAVSKYADYDALKEKLSAYEKAEQEKADAELTELDRIKKELEAKSEAEQSLAKQIEDLK 112

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847
                +    +  I    +  +  + DAL+    S + +     +E K   +  V  +++
Sbjct: 113 KADEQN-KVTNEFIKVATAHGIAYIDDALRLADLSEVKV-----EEGKVHGIEGVVREIV 166

Query: 848 DR----FNAVDLARLSAKVLGGGGGGG 870
           D       +   ++   +   GGG GG
Sbjct: 167 DNKPYLIKSTQNSKPIGQPTNGGGSGG 193


>gi|68436559|ref|XP_698346.1| PREDICTED: hypothetical protein LOC569844 [Danio rerio]
          Length = 438

 Score = 37.7 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 19/160 (11%)

Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686
                  ++ + +N++  +NL +        + +     A  G +  ++ R++S E E  
Sbjct: 150 DCDDTDGAVNNLLNELQEKNLKIECM----SEQLKKYEIASEGAEDPEKSRLMS-ENEKL 204

Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR--RIEAITGQRARSHLMGQDEKLKS 744
             +  +L    HV    EI  +    E  +   +   ++EA   ++A   + GQ E+LK 
Sbjct: 205 KDNIDSL----HVE-LQEIHQVLESKEQKLALDLEQLKLEADDSKKALQKMTGQHEQLKM 259

Query: 745 LASFLKVSQGNVVGRVEEIWEEYRK----LQLIHAKRKLQ 780
               LKV + + + +++++ EE  K    ++  H K K  
Sbjct: 260 ---ELKVEKESCIEKIKQLKEEMEKEIVHIEAAHMKEKAA 296


>gi|322513790|ref|ZP_08066876.1| hypothetical protein HMPREF0027_0628 [Actinobacillus ureae ATCC
           25976]
 gi|322120358|gb|EFX92288.1| hypothetical protein HMPREF0027_0628 [Actinobacillus ureae ATCC
           25976]
          Length = 89

 Score = 37.7 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764
              L I + SS   G  R E +   +A       +E  K      +  +     ++ ++ 
Sbjct: 13  ACSLAITACSSDNKGATRYENLVNSKAEETAKKAEEAAK------RAQESATAKKLSDLE 66

Query: 765 EEYRKLQLIHAKRKLQLNVEDLS 787
           ++ ++L+   AK+K Q       
Sbjct: 67  QKQKELEAELAKKKRQCGSAKFW 89


>gi|319790409|ref|YP_004152042.1| hypothetical protein Theam_1439 [Thermovibrio ammonificans HB-1]
 gi|317114911|gb|ADU97401.1| hypothetical protein Theam_1439 [Thermovibrio ammonificans HB-1]
          Length = 172

 Score = 37.7 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784
           A+  +  +  +  + ++L+ +   +KV        +++I  E + L+   A+R+L+  ++
Sbjct: 23  ALAQKAQKVEIEKELKRLEQMRKQVKVLIQENRKLLQKIEAERKALE--EARRELEKELK 80

Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844
                +      ++ + S++D +     + ALQ   +   ++L  +   K  ++L  V  
Sbjct: 81  QAQSERYKK---LAQMFSKMDPELAGQKISALQD-PKEAALILYNMKARKAGAILDYVDP 136

Query: 845 DLLDRF 850
            ++ + 
Sbjct: 137 KVVSQI 142


>gi|302679988|ref|XP_003029676.1| hypothetical protein SCHCODRAFT_82895 [Schizophyllum commune H4-8]
 gi|300103366|gb|EFI94773.1| hypothetical protein SCHCODRAFT_82895 [Schizophyllum commune H4-8]
          Length = 1249

 Score = 37.7 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783
           EA T QR    L  + ++ +     L      +  R EE+  +  +L+    + + +L  
Sbjct: 418 EAKTSQRTLQILQAKQKEFEEKKQTLSEQAETLEARKEELEGKVSELENDLNRARQELRN 477

Query: 784 EDLSCHKIADVNFMSH-IISEVDSKELKSVMDA 815
              +  KIA +  ++   +  V +  L++ +D 
Sbjct: 478 HQETRAKIAQLESVAKEKLENVHASLLQASVDR 510


>gi|83316022|ref|XP_731045.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490960|gb|EAA22610.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 1409

 Score = 37.7 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 57/144 (39%), Gaps = 8/144 (5%)

Query: 729  QRARSHLMGQDEKLKSLAS----FLKVSQGNVVGRVEEIWEEY-RKLQLIHAKRKLQLNV 783
             +        ++KLK  A      +KV   N V +V ++ ++   KL+    K    + V
Sbjct: 1011 DKVTKAAKDNEDKLKKEAKKGIESVKVKTENAVDKVTKVAKDNGDKLKKEAQKGVEAVKV 1070

Query: 784  EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843
            +  +    A V  +    ++++++  K  ++ ++ K ++ +   V +  +    +     
Sbjct: 1071 KTENAVDKA-VKVVKDGANKLENET-KKGVETVKAKTENAVDKAVKVVNDGANKLEKEAK 1128

Query: 844  EDL-LDRFNAVDLARLSAKVLGGG 866
            + +   +    +    + KV+  G
Sbjct: 1129 KGVETVKAKTENAVDKAVKVVNDG 1152


>gi|237755991|ref|ZP_04584576.1| chaperonin GroL [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691854|gb|EEP60877.1| chaperonin GroL [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 544

 Score = 37.7 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809
           K +  ++  R+E+I ++       + K KLQ  +  L    +A +   +   +E+  K+ 
Sbjct: 336 KGNPEDIKARIEQIKKQIETTTSEYDKEKLQERLAKL-AGGVAIIKVGAATEAELKEKKD 394

Query: 810 K--SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +    + A +  ++ GI+   GI+  + +  L  + E+  D+   + + + + KV
Sbjct: 395 RVDDAVHATKAAVEEGIVPGGGIALFRASRALCNIKEENTDKAWGIKIVKNACKV 449


>gi|254572770|ref|XP_002493494.1| Essential protein involved in intracellular protein transport [Pichia
            pastoris GS115]
 gi|238033293|emb|CAY71315.1| Essential protein involved in intracellular protein transport [Pichia
            pastoris GS115]
 gi|328354682|emb|CCA41079.1| Intracellular protein transport protein USO1 [Pichia pastoris CBS
            7435]
          Length = 1404

 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 86/238 (36%), Gaps = 25/238 (10%)

Query: 597  LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656
            L  + G   +   S  T +G R ++      +      +E+ +N     N  + +++   
Sbjct: 1118 LDEMKGEKNALQSSIFTLNGRREEMEQELKESKEHTIELEELINAQKESNKELESKLQES 1177

Query: 657  EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716
             D++   +  L+      ++    +   +  +   +    T V    E   L  + +  I
Sbjct: 1178 TDSLKRQSEILVELDKEKQLLEERINNLESQLAEISSDHETLVPEDEEHGRLLHLKDKEI 1237

Query: 717  RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776
                        +  ++ + G +++   L++ L + Q ++      + ++ R+L     K
Sbjct: 1238 ------------EELKTKVDGLEDEKSKLSTELNLIQEDIYEVKRSLQDQIREL--AEEK 1283

Query: 777  RKLQLNVEDLSCHKIA-------DVNFMSHIISEVD--SKELKSVMD--ALQKKIQSG 823
              LQ ++  +   K          +  +   + E D   + L+   D   LQKK +SG
Sbjct: 1284 FNLQNSLNSIESEKKKPETDLLEQIKLLKGQLDEKDRLIQTLEQGQDEEELQKKPESG 1341


>gi|229133839|ref|ZP_04262662.1| 3D domain protein [Bacillus cereus BDRD-ST196]
 gi|228649540|gb|EEL05552.1| 3D domain protein [Bacillus cereus BDRD-ST196]
          Length = 571

 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758
           V    E  +  I  E +    I    A   + A++  + + ++        K  +   V 
Sbjct: 292 VKPKEEAKVKEIEKEEAKAQEI----AKAKEEAKAQKIAKAKEEAKAQEIAKAKEEAKVQ 347

Query: 759 RVEEIWEEYRKLQLIHAK-----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813
            +E++ EE +  ++  AK     R+++   E+    +IA     +       +KE     
Sbjct: 348 EIEKVKEEAKAQEIAKAKEEAKVREMEKAKEEARAQEIAKAKEEAKAREIEKAKEEAKAQ 407

Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862
           +  + K ++    +    +E KA  +    ++   R   ++ A+  A+ 
Sbjct: 408 EIAKAKKEAQAREIEKAKEEAKAQEIAKAKKEAQAR--EIEKAKEEAQA 454


>gi|126696157|ref|YP_001091043.1| glycyl-tRNA synthetase beta subunit [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543200|gb|ABO17442.1| Glycyl-tRNA synthetase beta subunit [Prochlorococcus marinus str.
           MIT 9301]
          Length = 720

 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 84/235 (35%), Gaps = 23/235 (9%)

Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334
           I D + +   +   G  P+     Y LRR +   +       +  P +  L   L     
Sbjct: 467 IADKVETLISIFISGKRPSGSSDPYALRRNLNGVIKIIWDYEFDLP-LDKLFNELIDFWK 525

Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394
            A+P L  ++  +   L                L+  ++SHL ++  L+ ++   +  + 
Sbjct: 526 IAFPNLNFSREKVFNDLNE-------------FLVQRIVSHL-EEISLSKELIRAVCSSD 571

Query: 395 GLPLDIMQDILCARG-LAGI-DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452
            L    + +I+  +  +  I D       +E Q+   RA  L   S  +  +  + ++  
Sbjct: 572 ELSKKRVLNIVDLKNRIKSIMDFNEKENFVEIQKVITRASKLANNSDLSTDVLAT-RDYV 630

Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPP-----IDLTNGVSSIVKAIVQQGEIV 502
               F     L+  +F++E  K+  +        ++L     + ++ +    + V
Sbjct: 631 NTKLFEKDCELKVFEFIEELEKLFSEDYCNYLELLNLFEINVNTIEDLFDNEKGV 685


>gi|73950884|ref|XP_535396.2| PREDICTED: similar to forkhead-associated (FHA) phosphopeptide
           binding domain 1 isoform 1 [Canis familiaris]
          Length = 1353

 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 23/217 (10%)

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL--PVVTRIMNREDAI-ASGAAALLGTK 671
           D     +   K I+      +E    D +  NL   V +      +A  +     +L   
Sbjct: 225 DKDEIILLLGKEISRLSDFELESKYKDAVIANLQNEVASLNQRLSEATTSRQKFQVLDED 284

Query: 672 YNDRVRVVSVEYEDGGV----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +D+   +             +S  LC  T      EI  L    E      +RR  A+T
Sbjct: 285 IDDKQSEIQSLKNQISALQQGYSQVLCQ-TLSERNSEITSLKNEGE-----NLRRDHAVT 338

Query: 728 GQRA---RSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                  +  +  +DE+++ L    + LK        ++E +      L+    K   Q 
Sbjct: 339 SGMVSSLQKEVFTRDEEIQQLKQDVNQLKSENKEKDHQLEALSSRCSALKEELRKEDAQK 398

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             ++    ++         I +++ KE+K + + L+K
Sbjct: 399 ERQEAQGKEL---KLCKIQIQDME-KEMKKLREELKK 431


>gi|73950886|ref|XP_865270.1| PREDICTED: similar to forkhead-associated (FHA) phosphopeptide
           binding domain 1 isoform 2 [Canis familiaris]
          Length = 1398

 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 23/217 (10%)

Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL--PVVTRIMNREDAI-ASGAAALLGTK 671
           D     +   K I+      +E    D +  NL   V +      +A  +     +L   
Sbjct: 225 DKDEIILLLGKEISRLSDFELESKYKDAVIANLQNEVASLNQRLSEATTSRQKFQVLDED 284

Query: 672 YNDRVRVVSVEYEDGGV----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727
            +D+   +             +S  LC  T      EI  L    E      +RR  A+T
Sbjct: 285 IDDKQSEIQSLKNQISALQQGYSQVLCQ-TLSERNSEITSLKNEGE-----NLRRDHAVT 338

Query: 728 GQRA---RSHLMGQDEKLKSL---ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781
                  +  +  +DE+++ L    + LK        ++E +      L+    K   Q 
Sbjct: 339 SGMVSSLQKEVFTRDEEIQQLKQDVNQLKSENKEKDHQLEALSSRCSALKEELRKEDAQK 398

Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818
             ++    ++         I +++ KE+K + + L+K
Sbjct: 399 ERQEAQGKEL---KLCKIQIQDME-KEMKKLREELKK 431


>gi|20429011|emb|CAC79651.1| threonyl-tRNA synthetase [Oryza sativa Japonica Group]
          Length = 531

 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSAL 693
           I+      +A+  P     ++R +A+   A         N+     ++     G     L
Sbjct: 18  IDAQAQKAVAEKQPFERIEVSRAEALEMFAENKFKVEIINELPEDKTITVYRCGP-LVDL 76

Query: 694 CGGTHVSSTGEIMLLYIVSESS 715
           C G H+ +T  +     +  SS
Sbjct: 77  CRGPHIPNTSFVKAFACLKASS 98


>gi|308470033|ref|XP_003097252.1| hypothetical protein CRE_19904 [Caenorhabditis remanei]
 gi|308240472|gb|EFO84424.1| hypothetical protein CRE_19904 [Caenorhabditis remanei]
          Length = 1194

 Score = 37.7 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 18/232 (7%)

Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI-IAQNLPVVTRIMNREDAIASGAAA 666
             S      +R DV   K   +     + +   ++ I + L V            +    
Sbjct: 670 EESTSDDGKIRDDVGTLKRYCAELQSKLSETEEELKIVKELKVEESN-EAAQMRKALEKE 728

Query: 667 LLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726
           L   +  DR  +  +E    GV                +  L I +E    + I  +   
Sbjct: 729 LFEAEEVDRGLLEGIEKRVKGVEEL----------RSTLTALKIENEELKTSKIDDLT-- 776

Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR---VEEIWEEYRKLQLIHAKRKLQLNV 783
           T ++ R+      E+ K L    K+ Q   +     VEE+  E +KL+L + + K   + 
Sbjct: 777 TMEQLRAQYTVLQEETKELKGTAKMQQEEYLKALSGVEELQTEIQKLKLENLELKTAQSS 836

Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835
            +     + ++   +    + +++ LK V     ++ QS I  L   + E K
Sbjct: 837 TETDSATVEELR-AAITALQAENEHLKGVAKTQNEENQSEIQKLKSENLELK 887


>gi|145549073|ref|XP_001460216.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428045|emb|CAK92819.1| unnamed protein product [Paramecium tetraurelia]
          Length = 446

 Score = 37.7 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA 792
           +++  Q++     +         +  +V+   E  +KLQ+   + K QL   +    KI 
Sbjct: 158 NYIGRQED-----SELPSDQSKELAVQVKREQENNKKLQIELQQTKDQLQNINKEVEKIM 212

Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSG 823
               +  II + + K+L+  ++ L+K+    
Sbjct: 213 QYQLL--IIRQQNQKDLEKKINDLKKQYHED 241


>gi|313891069|ref|ZP_07824688.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120432|gb|EFR43552.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 532

 Score = 37.7 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           ++A++ L   + KL   A  +KV    +  +V  + EE  + ++   K + ++ V     
Sbjct: 329 EKAKADLAEVEAKLAE-ADKVKV---ELEAKVATLTEELEEAKVEAEKLEAKVEV---LA 381

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838
            ++A+V          + + L++ +D L+++ Q  I  L  I  EK   +
Sbjct: 382 KELAEVK--------AEKEALQAEIDKLKEEHQKEIDALNAILAEKDKLI 423


>gi|255528658|ref|ZP_05395412.1| phage shock protein A, PspA [Clostridium carboxidivorans P7]
 gi|296188346|ref|ZP_06856738.1| PspA/IM30 family protein [Clostridium carboxidivorans P7]
 gi|255507651|gb|EET84137.1| phage shock protein A, PspA [Clostridium carboxidivorans P7]
 gi|296047472|gb|EFG86914.1| PspA/IM30 family protein [Clostridium carboxidivorans P7]
          Length = 216

 Score = 37.7 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 34/75 (45%)

Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806
           + LK S  +   + E +  + R+L+    K +   +      +       ++ I+S VD+
Sbjct: 102 NSLKTSYEDASKKAETLKAKLRELENEIEKTRAYRDEASARFNNAEASKKVNEILSNVDA 161

Query: 807 KELKSVMDALQKKIQ 821
              K  +D +++K+Q
Sbjct: 162 GSNKINLDDIERKVQ 176


>gi|225448751|ref|XP_002281489.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736455|emb|CBI25326.3| unnamed protein product [Vitis vinifera]
          Length = 830

 Score = 37.7 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 732 RSHLMGQDEKLKSLASFLK-VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLS 787
           RS L+  +E   +L   +K  ++  +  RVE++ +E  +L+   A ++ Q   +    + 
Sbjct: 616 RSALLRAEELETALMEMVKQDNRRQLSARVEQLEQEVSELRQALADKQEQEHAMLQVLVR 675

Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832
             +   +   +   +E D+   +     LQ+K +  I  L  + K
Sbjct: 676 VEQEQKLTEDARRFAEQDAAAQRYAAQVLQEKYEEAITSLAQMEK 720


>gi|124003802|ref|ZP_01688650.1| PAS domain S-box protein [Microscilla marina ATCC 23134]
 gi|123990857|gb|EAY30324.1| PAS domain S-box protein [Microscilla marina ATCC 23134]
          Length = 1528

 Score = 37.7 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
           + A++ L+ Q+E+L+  A  L+    ++  R++E        Q I  K +  L  E+   
Sbjct: 872 KEAQNKLVQQEEELRQNAEELQALNESLEKRIQE------ATQDIQEKNQRLLAQEEELR 925

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848
             I ++N ++  + +  ++  + ++D  +   ++   +     +++K + +I  ++D++ 
Sbjct: 926 QNIEELNSLNESLDDKVAQRTQELVDKEKLLQKNLHNLREAQIEQQKLATMIDNSDDMIA 985


>gi|301775757|ref|XP_002923293.1| PREDICTED: keratin, type II cytoskeletal 8-like [Ailuropoda
           melanoleuca]
 gi|281341816|gb|EFB17400.1| hypothetical protein PANDA_012426 [Ailuropoda melanoleuca]
          Length = 491

 Score = 37.7 bits (86), Expect = 9.8,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 73/210 (34%), Gaps = 23/210 (10%)

Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDR 675
           V   K     E+K   D  N+ +     V    MN+ +  +           L   Y + 
Sbjct: 180 VEDFKNKYEEEIKERADMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEE 239

Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735
           +R +  +  D  V  S       + ++  + L  I++E  ++A    I   +   A +  
Sbjct: 240 IRELQSQISDTSVVLS-------MDNSHCLDLDGIIAE--VKAQYEDIANRSRAEAEAMY 290

Query: 736 MGQDEKLKSLASF-------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC 788
             + E+L++LA          K     +   +  +  E   L+   A  +  +   +   
Sbjct: 291 QIKYEELQTLAGKHGDDLRRTKTEISEMNRSISRLQAEIEALKNQRAALEAAIADAEQRG 350

Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQK 818
                +   +  ++E+++   ++  D  ++
Sbjct: 351 ELA--IKDANAKVAELEAALQRAKQDMARQ 378


>gi|301614157|ref|XP_002936554.1| PREDICTED: myosin-Vb [Xenopus (Silurana) tropicalis]
          Length = 1840

 Score = 37.7 bits (86), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 733  SHLMGQDEKLKSL--ASFLKVSQG-----NVVGRVEEIWEEYRKLQLIHAKRKLQLNVED 785
            S +   ++ +K +  A   K +        +  RV E+  E +KLQ    K++ Q N + 
Sbjct: 1118 SEIGDTEDTIKEVEEAGLEKAAMDMSLFLKLQKRVRELELERKKLQSQLDKKEQQENKKS 1177

Query: 786  LSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKIQSGII 825
                   +V          N +     E ++K+LK+ ++ ++K I  G +
Sbjct: 1178 QVIDTTNEVIADRDTDIAYNNLKRQELESENKKLKNDLNEMRKTIADGAV 1227


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.312    0.133    0.369 

Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,119,115,376
Number of Sequences: 13984884
Number of extensions: 610665301
Number of successful extensions: 2773436
Number of sequences better than 10.0: 8779
Number of HSP's better than 10.0 without gapping: 9449
Number of HSP's successfully gapped in prelim test: 4827
Number of HSP's that attempted gapping in prelim test: 2680274
Number of HSP's gapped (non-prelim): 22490
length of query: 898
length of database: 4,792,584,752
effective HSP length: 148
effective length of query: 750
effective length of database: 2,722,821,920
effective search space: 2042116440000
effective search space used: 2042116440000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 86 (37.7 bits)